isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	diff_to_gene_TSS	diff_to_gene_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	CDS_genomic_start	CDS_genomic_end	predicted_NMD	perc_A_downstream_TTS	seq_A_downstream_TTS	dist_to_cage_peak	within_cage_peak	pos_cage_peak	dist_to_polya_site	within_polya_site	polyA_motif	polyA_dist	ORF_seq	TSS_genomic_coord	TTS_genomic_coord	experiment_id	entry_id	LRGASP_id
ENSMUSG00000000001.5_0	chr3	-	3210	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	35	17	35	-17	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTTTGTCTCTGCACAC	NA	False	NA	-27	True	ATTAAA	-15	NA	108053427	108014612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
ENSMUSG00000000001.5_2	chr3	-	1262	1	ISM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	37588	17	37588	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTTTGTCTCTGCACAC	2006	False	NA	-27	True	ATTAAA	-15	NA	108015874	108014612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_108014600_108015900
ENSMUSG00000000028.16_0	chr16	-	1882	19	ISM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	349	6	3	0	3prime_fragment	TRUE	canonical	3	368	junction_7	53.1151788307469	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCTCTGGGTCTGTGAT	NA	False	NA	-8	True	AATAAA	-15	NA	18630373	18599202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
ENSMUSG00000000028.16_19	chr16	-	1744	18	FSM	ENSMUSG00000000028.16	ENSMUST00000096990.10	1747	18	3	0	3	0	multi-exon	FALSE	canonical	3	21	junction_15	122.52143375795	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCTCTGGGTCTGTGAT	NA	False	NA	-8	True	AATAAA	-15	NA	18630373	18599202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18629138_18629232_18630054_18630115_18630264
ENSMUSG00000000037.18_208	chrX	+	987	1	ISM	ENSMUSG00000000037.18	ENSMUST00000112345.8	4847	26	94444	11	10959	6	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATTAACAGCTAAGCCT	NA	False	NA	8	True	AATAAA	-17	NA	160040211	160041198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_160040200_160041200
ENSMUSG00000000037.18_74	chrX	+	4522	26	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14631	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	105.553747446502	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCAATTAACAGCTAAGC	4662	False	NA	6	True	AATAAA	-15	NA	159921894	160041196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_159922060_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
ENSMUSG00000000056.8_0	chr11	+	3099	11	FSM	ENSMUSG00000000056.8	ENSMUST00000103015.4	4395	11	-2	1298	-2	-1298	multi-exon	FALSE	canonical	3	80	junction_4	11.0295058819514	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGTGTGGCATTGAAG	NA	False	NA	NA	False	AATAAA	-14	NA	121128076	121145384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_121128178_121129244_121129344_121133326_121133471_121135419_121135553_121135761_121135897_121136163_121136283_121137751_121137882_121139954_121140019_121141118_121141257_121141585_121141744_121143506
ENSMUSG00000000056.8_12	chr11	+	2022	2	ISM	ENSMUSG00000000056.8	ENSMUST00000103015.4	4395	11	13526	1293	5759	-1293	3prime_fragment	FALSE	canonical	3	87	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGGCATTGAAGGAGTC	NA	False	NA	NA	False	AATAAA	-19	NA	121141604	121145389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_121141744_121143506
ENSMUSG00000000056.8_13	chr11	+	1376	1	ISM	ENSMUSG00000000056.8	ENSMUST00000103015.4	4395	11	15930	1298	8163	-1298	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGTGTGGCATTGAAG	NA	False	NA	NA	False	AATAAA	-14	NA	121144008	121145384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_121144000_121145400
ENSMUSG00000000058.7_0	chr6	+	2530	3	FSM	ENSMUSG00000000058.7	ENSMUST00000000058.7	2733	3	92	111	-50	-111	multi-exon	FALSE	canonical	1	1	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGTGGATGATTTCA	54	False	NA	NA	False	AATAAA	-8	NA	17281275	17289003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_17281510_17281893_17282082_17286895
ENSMUSG00000000078.8_1	chr13	+	4193	4	FSM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	28	4	28	-4	multi-exon	FALSE	canonical	3	176	junction_1	9.7410927974683	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTGGAGCCTGATTGT	NA	False	NA	4	True	CATAAA	-14	NA	5911508	5920389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_5911842_5914766_5915344_5916637_5916762_5917230
ENSMUSG00000000078.8_11	chr13	+	2301	1	ISM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	6608	4	3412	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTGGAGCCTGATTGT	NA	False	NA	4	True	CATAAA	-14	NA	5918088	5920389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_5918100_5920400
ENSMUSG00000000078.8_9	chr13	+	3569	3	ISM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	3577	4	381	-4	3prime_fragment	FALSE	canonical	3	195	junction_1	1.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTGGAGCCTGATTGT	NA	False	NA	4	True	CATAAA	-14	NA	5915057	5920389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_5915344_5916637_5916762_5917230
ENSMUSG00000000085.17_0	chr4	+	3373	17	FSM	ENSMUSG00000000085.17	ENSMUST00000000087.13	3353	17	-29	9	-3	-9	multi-exon	FALSE	canonical	3	47	junction_13	8.94776508408664	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACAAATGCCCGTGTCTT	NA	False	NA	3	True	AATAAA	-5	NA	120262474	120387372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_120262654_120304229_120304359_120310440_120310504_120310948_120310973_120319209_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786_120341031_120362480_120362711_120365282_120365410_120372270_120372472_120374082_120374275_120379651_120379847_120382194_120382261_120385352_120385496_120386330
ENSMUSG00000000085.17_10	chr4	+	4212	13	FSM	ENSMUSG00000000085.17	ENSMUST00000106298.10	1995	13	-1290	-927	-1290	0	multi-exon	FALSE	canonical	3	47	junction_9	9.9537123169644	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGTCTTTTTAACCAGTT	NA	False	NA	14	True	AATAAA	-16	NA	120317986	120387383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786_120341031_120362480_120362711_120365282_120365410_120372270_120372472_120374082_120374275_120379651_120379847_120382194_120382261_120385352_120385496_120386330
ENSMUSG00000000085.17_2	chr4	+	3583	18	NIC	ENSMUSG00000000085.17	novel	3353	17	NA	NA	1	2	intron_retention	FALSE	canonical	0	0	junction_4	22.223308316404	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAACCAATACAAAT	NA	False	NA	-8	True	NA	NA	NA	120262478	120387361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_120262654_120304229_120304359_120310440_120310504_120310948_120310973_120313481_120313707_120319209_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786_120341031_120362480_120362711_120365282_120365410_120372270_120372472_120374082_120374275_120379651_120379847_120382194_120382261_120385352_120385496_120386330
ENSMUSG00000000088.8_3	chr9	+	656	5	FSM	ENSMUSG00000000088.8	ENSMUST00000000090.8	645	5	-13	2	-8	-2	multi-exon	FALSE	canonical	3	7868	junction_4	746.021908190369	2286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTAGGTCTTGTGATGTT	364	False	NA	20	True	AATAAA	-20	NA	57428548	57439707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
ENSMUSG00000000093.7_0	chr11	+	2436	7	FSM	ENSMUSG00000000093.7	ENSMUST00000000095.7	3626	7	386	804	386	-804	multi-exon	FALSE	canonical	1	1	junction_1	1.10554159678513	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAGAGCCTCGCGTGGC	9979	False	NA	NA	False	AATAAA	-26	NA	85723762	85731970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_85724328_85725445_85725714_85726620_85726768_85727878_85727956_85728051_85728216_85728669_85729308_85731393
ENSMUSG00000000094.13_1	chr11	+	3214	9	FSM	ENSMUSG00000000094.13	ENSMUST00000108047.8	3153	9	-59	-2	-59	0	multi-exon	FALSE	canonical	0	0	junction_5	1.11803398874989	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGTGTGTTTGTCCTTTG	NA	False	NA	NA	False	CATAAA	-18	NA	85777188	85806923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_85777389_85780885_85781090_85781682_85781778_85789318_85789439_85790575_85790724_85801932_85802086_85802761_85802851_85802931_85803168_85804954
ENSMUSG00000000094.13_2	chr11	+	2731	5	ISM	ENSMUSG00000000094.13	ENSMUST00000108045.3	2959	7	2842	5	2842	-5	3prime_fragment	FALSE	canonical	0	0	junction_1	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGAAGTGTGTGTTTG	NA	False	NA	NA	False	CATAAA	-11	NA	85790432	85806916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_85790724_85801932_85802086_85802761_85802851_85802931_85803168_85804954
ENSMUSG00000000120.7_0	chr11	-	3394	6	FSM	ENSMUSG00000000120.7	ENSMUST00000000122.7	3446	6	39	13	39	-13	multi-exon	FALSE	canonical	3	62	junction_2	5.88557558782486	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGCAAAAAAAAAAGAAAACG	NA	False	NA	NA	False	ATTAAA	-2	NA	95478522	95459656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95461922_95462645_95462807_95465016_95465270_95468799_95469160_95471778_95471921_95478309
ENSMUSG00000000125.6_0	chr11	+	3134	5	FSM	ENSMUSG00000000125.6	ENSMUST00000000127.6	3076	5	-46	-12	-46	12	multi-exon	FALSE	canonical	0	0	junction_1	1.4790199457749	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCATCATGCAGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	103664929	103708795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_103665175_103698975_103699218_103702153_103702420_103703106_103703595_103706902
ENSMUSG00000000125.6_1	chr11	+	2483	3	ISM	ENSMUSG00000000125.6	ENSMUST00000000127.6	3076	5	35738	1592	35738	-1592	3prime_fragment	FALSE	canonical	2	2	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTTAAAGAAAATAAAAATGA	2968	False	NA	NA	False	NA	NA	NA	103700713	103707191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_103702420_103703106_103703595_103706902
ENSMUSG00000000125.6_2	chr11	+	796	2	ISM	ENSMUSG00000000125.6	ENSMUST00000000127.6	3076	5	38119	1585	38119	-1585	3prime_fragment	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATGAAAAAAAA	5349	False	NA	NA	False	NA	NA	NA	103703094	103707198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_103703595_103706902
ENSMUSG00000000126.12_0	chr11	+	3354	4	FSM	ENSMUSG00000000126.12	ENSMUST00000108783.4	3318	4	-49	13	-47	-13	multi-exon	FALSE	canonical	1	1	junction_3	1.69967317119759	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAGACAACCTAAGTCCG	5569	False	NA	NA	False	AATAAA	-12	NA	59197706	59224365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59197894_59218389_59218647_59219327_59219591_59221718
ENSMUSG00000000127.16_0	chr17	+	2757	19	NIC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	3	108	junction_1	24.9886393940413	144	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCGTATTAGCTAACCACA	NA	False	NA	3	True	AATAAA	-14	NA	64171003	64446191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288474_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
ENSMUSG00000000127.16_1	chr17	+	2756	19	NIC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	-8	-1	combination_of_known_junctions	FALSE	canonical	3	71	junction_10	30.9070689904469	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCGTATTAGCTAACCACA	NA	False	NA	3	True	AATAAA	-14	NA	64171001	64446191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288477_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
ENSMUSG00000000131.16_11	chr7	-	4471	24	FSM	ENSMUSG00000000131.16	ENSMUST00000009344.16	4455	24	-25	9	-11	-4	multi-exon	TRUE	canonical	3	58	junction_14	102.701045398272	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAACACTAGTGATGGG	NA	False	NA	NA	False	AATAAA	-18	NA	125799605	125700896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_125701563_125703875_125704107_125704272_125704372_125706242_125706405_125707623_125707796_125707957_125708073_125709085_125709242_125711923_125712114_125712828_125712976_125714979_125715125_125719528_125719622_125723543_125723704_125727398_125727469_125728719_125728810_125730197_125730307_125739736_125739847_125748405_125748533_125751997_125752452_125755895_125755974_125760032_125760193_125768300_125768499_125770201_125770315_125773329_125773421_125799070
ENSMUSG00000000131.16_2	chr7	-	4482	24	FSM	ENSMUSG00000000131.16	ENSMUST00000168189.8	4552	24	60	10	-19	-4	multi-exon	FALSE	canonical	3	436	junction_21	38.8223134638356	1079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAACACTAGTGATGGG	NA	False	NA	NA	False	AATAAA	-18	NA	125799613	125700896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_125701563_125703875_125704107_125704272_125704372_125706242_125706405_125707623_125707796_125707957_125708073_125709085_125709242_125711923_125712114_125712828_125712976_125714979_125715125_125719528_125719622_125723543_125723704_125727398_125727469_125728719_125728813_125730197_125730307_125739736_125739847_125748405_125748533_125751997_125752452_125755895_125755974_125760032_125760193_125768300_125768499_125770201_125770315_125773329_125773421_125799070
ENSMUSG00000000134.18_0	chrX	+	2945	10	NIC	ENSMUSG00000000134.18	novel	6328	7	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	90.0647229551485	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628795	7641438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7628870_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUSG00000000134.18_17	chrX	+	3229	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115679.8	3239	10	8	2	8	0	multi-exon	FALSE	canonical	3	33	junction_2	88.3978101510788	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628922	7641438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7629300_7631745_7631860_7632812_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUSG00000000134.18_19	chrX	+	3138	9	FSM	ENSMUSG00000000134.18	ENSMUST00000079542.13	3163	9	25	0	-6	0	multi-exon	FALSE	canonical	3	29	junction_4	94.1407689314252	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628927	7641438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUSG00000000134.18_39	chrX	+	2909	10	NIC	ENSMUSG00000000134.18	novel	2943	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	87.2919042249043	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7630199	7641438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7630238_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUSG00000000134.18_6	chrX	+	3245	10	FSM	ENSMUSG00000000134.18	ENSMUST00000077680.10	3277	10	29	3	-8	0	multi-exon	FALSE	canonical	3	227	junction_1	30.4046780026437	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628925	7641438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUSG00000000134.18_60	chrX	+	1136	1	ISM	ENSMUSG00000000134.18	ENSMUST00000077680.10	3277	10	11406	3	4634	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	1617	False	NA	22	True	AATAAA	-33	NA	7640302	7641438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_7640300_7641400
ENSMUSG00000000142.16_0	chr11	+	4194	11	FSM	ENSMUSG00000000142.16	ENSMUST00000052915.14	4260	11	61	5	61	-5	multi-exon	FALSE	canonical	3	13	junction_1	12.1720992437624	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGTCAGCCTCATCTT	NA	False	NA	2	True	ATTAAA	-14	NA	108811235	108841604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_108811388_108813977_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
ENSMUSG00000000142.16_10	chr11	+	4400	11	NIC	ENSMUSG00000000142.16	novel	2551	9	NA	NA	-8	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	15.8015821992609	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGCCTCATCTTT	NA	False	NA	3	True	ATTAAA	-15	NA	108812465	108841605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_108812823_108813977_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
ENSMUSG00000000142.16_12	chr11	+	3582	10	ISM	ENSMUSG00000000142.16	ENSMUST00000052915.14	4260	11	3264	4	432	-4	3prime_fragment	FALSE	canonical	3	42	junction_3	5.34258456896503	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGCCTCATCTTT	NA	False	NA	3	True	ATTAAA	-15	NA	108814438	108841605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
ENSMUSG00000000142.16_2	chr11	+	4402	11	NIC	ENSMUSG00000000142.16	novel	2551	9	NA	NA	35	-4	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	5.20096144957834	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGCCTCATCTTT	NA	False	NA	3	True	ATTAAA	-15	NA	108811660	108841605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_108812020_108813977_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
ENSMUSG00000000142.16_8	chr11	+	4077	11	NIC	ENSMUSG00000000142.16	novel	2551	9	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	15.2345003199974	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGCCTCATCTTT	NA	False	NA	3	True	ATTAAA	-15	NA	108812157	108841605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_108812192_108813977_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
ENSMUSG00000000148.18_0	chr5	+	3307	14	FSM	ENSMUSG00000000148.18	ENSMUST00000041588.13	3333	14	21	5	9	-5	multi-exon	FALSE	canonical	3	71	junction_1	10.6471097836719	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGTTCTGTCTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	140690786	140705129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_140690831_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
ENSMUSG00000000148.18_20	chr5	+	3417	14	FSM	ENSMUSG00000000148.18	ENSMUST00000100505.3	3431	14	10	4	10	-4	multi-exon	FALSE	canonical	2	10	junction_1	24.1966793164027	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGTTCTGTCTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	140690830	140705130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_140690984_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
ENSMUSG00000000148.18_3	chr5	+	3286	14	NNC	ENSMUSG00000000148.18	novel	3333	14	NA	NA	2	19	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	23.2126776216546	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAATAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	140690779	140705104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_140690831_140691707_140691852_140695892_140696048_140697263_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
ENSMUSG00000000148.18_4	chr5	+	3313	14	NIC	ENSMUSG00000000148.18	novel	3333	14	NA	NA	2	19	combination_of_known_junctions	FALSE	canonical	2	11	junction_5	24.0315374643282	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAATAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	140690779	140705104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_140690831_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698657_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
ENSMUSG00000000148.18_41	chr5	+	1297	1	ISM	ENSMUSG00000000148.18	ENSMUST00000041588.13	3333	14	13061	11	13006	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTAAAGTTCTGTCT	1358	False	NA	NA	False	NA	NA	NA	140703826	140705123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_140703800_140705100
ENSMUSG00000000149.11_1	chr5	-	3412	4	FSM	ENSMUSG00000000149.11	ENSMUST00000000153.9	3416	4	-6	10	-6	-10	multi-exon	FALSE	canonical	3	201	junction_1	26.9938264547038	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAACCAGTCTGCTTCA	NA	False	NA	NA	False	AATAAA	-17	NA	140816192	140744172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_140746874_140748344_140748396_140771151_140771368_140815748
ENSMUSG00000000149.11_4	chr5	-	1944	1	ISM	ENSMUSG00000000149.11	ENSMUST00000000153.9	3416	4	70070	10	69796	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAACCAGTCTGCTTCA	NA	False	NA	NA	False	AATAAA	-17	NA	140746116	140744172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_140744200_140746100
ENSMUSG00000000154.17_0	chr7	+	1503	11	FSM	ENSMUSG00000000154.17	ENSMUST00000052348.12	1525	11	18	4	-14	-4	multi-exon	FALSE	canonical	2	3	junction_2	2.44131112314674	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTCTTTGGGCTTTGC	874	False	NA	NA	False	AATAAA	-21	NA	143027490	143053067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_143027575_143029806_143030043_143033021_143033120_143033456_143033618_143034126_143034260_143044548_143044662_143045482_143045591_143046578_143046680_143050687_143050790_143051046_143051168_143052821
ENSMUSG00000000159.17_1	chr16	+	1891	9	FSM	ENSMUSG00000000159.17	ENSMUST00000000163.13	1851	9	-40	0	-40	0	multi-exon	TRUE	canonical	0	0	junction_1	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACCTTGTATTATCTTT	6275	False	NA	NA	False	AATAAA	-14	NA	96162953	96205228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_96163045_96165206_96165285_96174029_96174348_96179284_96179585_96187685_96187827_96192219_96192245_96197568_96197670_96199090_96199165_96204465
ENSMUSG00000000168.11_0	chr9	-	2602	14	FSM	ENSMUSG00000000168.11	ENSMUST00000034567.4	4035	14	273	1160	273	735	multi-exon	FALSE	canonical	3	1156	junction_6	75.3673449604703	1863	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTGAAGTGAACACGTTG	NA	False	NA	-13	True	AATAAA	-10	NA	50570807	50547092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490
ENSMUSG00000000171.6_0	chr9	-	1237	4	FSM	ENSMUSG00000000171.6	ENSMUST00000000175.6	1231	4	1	-7	1	7	multi-exon	FALSE	canonical	3	1351	junction_3	46.783187863448	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAATACATTGTACTT	NA	False	NA	NA	False	AATAAA	-10	NA	50515111	50507649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50508551_50510060_50510206_50511847_50511965_50515037
ENSMUSG00000000171.6_3	chr9	-	1236	4	NNC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	1	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	646.50186903571	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAATACATTGTACTT	NA	False	NA	NA	False	AATAAA	-10	NA	50515111	50507649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_50508551_50510061_50510206_50511847_50511965_50515037
ENSMUSG00000000194.14_0	chr2	+	3866	18	FSM	ENSMUSG00000000194.14	ENSMUST00000056433.7	6134	18	20	2248	3	1961	multi-exon	FALSE	canonical	1	139	junction_14	88.5769073297929	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTATTTCTTGGACAAC	NA	False	NA	-3	True	AATAAA	-10	NA	31042347	31106539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858_31081903_31097690_31097741_31099078_31099163_31100460_31100583_31104255
ENSMUSG00000000194.14_1	chr2	+	1841	14	ISM	ENSMUSG00000000194.14	ENSMUST00000056433.7	6134	18	20	26370	3	292	5prime_fragment	FALSE	canonical	2	275	junction_2	57.7895590577976	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCAAATCCAATAGGAA	NA	False	NA	NA	False	NA	NA	NA	31042347	31082417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858
ENSMUSG00000000194.14_51	chr2	+	3545	1	ISM	ENSMUSG00000000194.14	ENSMUST00000056433.7	6134	18	62600	315	4816	-315	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAAGCTTGTGTCTGTGGT	NA	False	NA	14	True	AATAAA	-10	NA	31104927	31108472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_31104900_31108500
ENSMUSG00000000244.18_0	chr7	+	1553	9	FSM	ENSMUSG00000000244.18	ENSMUST00000009396.13	1582	9	21	8	7	-5	multi-exon	FALSE	canonical	1	4	junction_1	3.07205143186113	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGAAACTTGGGTAGAAT	3190	False	NA	NA	False	NA	NA	NA	142558803	142573215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_142558913_142559640_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142570937_142571022_142571315_142571411_142572427
ENSMUSG00000000244.18_1	chr7	+	1472	8	NIC	ENSMUSG00000000244.18	novel	1582	9	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	3.39867921524866	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGGGTAGAATCCTTT	3192	False	NA	NA	False	NA	NA	NA	142558805	142573220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_142558913_142559640_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142571315_142571411_142572427
ENSMUSG00000000247.12_1	chr2	+	2517	5	FSM	ENSMUSG00000000247.12	ENSMUST00000000253.6	2840	5	315	8	315	-8	multi-exon	FALSE	canonical	0	0	junction_2	2.73861278752583	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGAAAAGACTCAGTGCTG	NA	False	NA	7	True	AATAAA	-8	NA	38241085	38259737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_38241906_38243322_38243526_38244460_38244865_38249909_38250116_38258853
ENSMUSG00000000253.14_0	chr13	+	1561	9	FSM	ENSMUSG00000000253.14	ENSMUST00000000260.13	1580	9	18	1	18	-1	multi-exon	FALSE	canonical	3	46	junction_4	10.0428768288773	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGTGCTGGAGTTTGCG	NA	False	NA	21	True	AATATA	-15	NA	45660937	45699857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_45661220_45667870_45667991_45670474_45670559_45674327_45674502_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
ENSMUSG00000000253.14_1	chr13	+	1655	10	NNC	ENSMUSG00000000253.14	novel	1580	9	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_5	25.8370965001015	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGTGCTGGAGTTTGCG	NA	False	NA	21	True	AATATA	-15	NA	45660936	45699857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_45661220_45667870_45667991_45670474_45670559_45674327_45674502_45674602_45674696_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
ENSMUSG00000000253.14_2	chr13	+	1404	8	NIC	ENSMUSG00000000253.14	novel	1580	9	NA	NA	15	-1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	24.2015347801392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGTGCTGGAGTTTGCG	NA	False	NA	21	True	AATATA	-15	NA	45660934	45699857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_45661220_45667870_45667991_45670474_45670559_45674327_45674502_45683183_45683266_45685769_45685877_45692500_45692544_45699348
ENSMUSG00000000253.14_3	chr13	+	1159	7	ISM	ENSMUSG00000000253.14	ENSMUST00000128873.2	871	9	3159	-483	3159	-1	3prime_fragment	FALSE	canonical	3	46	junction_2	11.5277443105271	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGTGCTGGAGTTTGCG	NA	False	NA	21	True	AATATA	-15	NA	45670474	45699857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_45670559_45674327_45674502_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
ENSMUSG00000000275.17_0	chr11	+	5480	10	NNC	ENSMUSG00000000275.17	novel	5590	9	NA	NA	59	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	180.202012841419	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGCGACATTGTCCTGCC	NA	False	NA	19	True	NA	NA	NA	88890260	88911114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907020_88910662_88910707
ENSMUSG00000000275.17_2	chr11	+	5526	9	FSM	ENSMUSG00000000275.17	ENSMUST00000107896.10	5590	9	58	6	58	-6	multi-exon	TRUE	canonical	3	172	junction_5	154.213123630902	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGCGACATTGTCCTGC	NA	False	NA	18	True	NA	NA	NA	88890259	88911113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907020
ENSMUSG00000000275.17_34	chr11	+	2872	2	NNC	ENSMUSG00000000275.17	novel	5566	8	NA	NA	17995	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGCGACATTGTCCTGCC	2265	False	NA	19	True	NA	NA	NA	88908196	88911114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_88910662_88910707
ENSMUSG00000000275.17_35	chr11	+	2850	1	ISM	ENSMUSG00000000275.17	ENSMUST00000107896.10	5590	9	18063	5	18063	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGCGACATTGTCCTGCC	2333	False	NA	19	True	NA	NA	NA	88908264	88911114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_88908300_88911100
ENSMUSG00000000276.12_6	chr11	-	1608	1	ISM	ENSMUSG00000000276.12	ENSMUST00000107894.8	8347	12	27256	2808	21154	-405	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCACTTTATATTCAGAAA	3815	False	NA	-22	True	AATAAA	-19	NA	88930420	88928812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_88928800_88930400
ENSMUSG00000000276.12_7	chr11	-	4790	11	FSM	ENSMUSG00000000276.12	ENSMUST00000000285.9	5208	11	1	417	1	-417	multi-exon	FALSE	canonical	3	42	junction_8	10.9859000541603	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCAAAAAGCCAGCACTT	3833	False	NA	-34	True	AATAAA	-7	NA	88951573	88928824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_88931738_88932273_88932386_88932987_88933116_88935065_88935138_88939714_88939829_88940674_88940727_88941144_88941303_88941494_88941639_88943252_88943373_88946183_88946344_88950756
ENSMUSG00000000278.11_1	chr11	-	2027	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	68	2	68	-2	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	3054	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACGGCTGAAAATTCTG	5269	False	NA	-11	True	AATAAA	-18	NA	88846223	88814847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
ENSMUSG00000000282.13_0	chr11	+	4560	6	FSM	ENSMUSG00000000282.13	ENSMUST00000000291.9	4590	6	13	17	13	-17	multi-exon	FALSE	canonical	3	77	junction_2	6.55438784326958	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACGGAGCTCCCAAGCC	NA	False	NA	24	True	AATAAA	-33	NA	74721758	74736534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_74722228_74727188_74727775_74728256_74728299_74728437_74728550_74732986_74733180_74733376
ENSMUSG00000000282.13_12	chr11	+	3775	5	ISM	ENSMUSG00000000282.13	ENSMUST00000000291.9	4590	6	5759	17	353	-17	3prime_fragment	FALSE	canonical	3	77	junction_1	4.15331193145904	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACGGAGCTCCCAAGCC	NA	False	NA	24	True	AATAAA	-33	NA	74727504	74736534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_74727775_74728256_74728299_74728437_74728550_74732986_74733180_74733376
ENSMUSG00000000282.13_15	chr11	+	3254	2	ISM	ENSMUSG00000000282.13	ENSMUST00000000291.9	4590	6	11338	17	4790	-17	3prime_fragment	FALSE	canonical	3	78	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACGGAGCTCCCAAGCC	NA	False	NA	24	True	AATAAA	-33	NA	74733083	74736534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_74733180_74733376
ENSMUSG00000000282.13_16	chr11	+	1904	1	ISM	ENSMUSG00000000282.13	ENSMUST00000000291.9	4590	6	12885	17	6337	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACGGAGCTCCCAAGCC	NA	False	NA	24	True	AATAAA	-33	NA	74734630	74736534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_74734600_74736500
ENSMUSG00000000282.13_2	chr11	+	4564	5	NIC	ENSMUSG00000000282.13	novel	4590	6	NA	NA	-64	-48	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	37.5923861972075	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAACTGAAATAAATCT	NA	False	NA	-7	True	AATAAA	-2	NA	74721681	74736503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_74722228_74727188_74727775_74728437_74728550_74732986_74733180_74733376
ENSMUSG00000000295.14_0	chr10	+	826	6	FSM	ENSMUSG00000000295.14	ENSMUST00000000304.14	858	6	23	9	1	-7	multi-exon	FALSE	canonical	3	475	junction_4	15.6025638918737	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTCCAGACTCTGTCTT	NA	False	NA	11	True	ATTAAA	-18	NA	31189401	31204191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
ENSMUSG00000000295.14_8	chr10	+	730	5	ISM	ENSMUSG00000000295.14	ENSMUST00000000304.14	858	6	1130	29	1041	-9	3prime_fragment	FALSE	canonical	3	475	junction_3	17.4212513901843	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCTGTTA	NA	False	NA	-9	True	NA	NA	NA	31190508	31204171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
ENSMUSG00000000296.9_0	chr10	-	1088	5	FSM	ENSMUSG00000000296.9	ENSMUST00000214644.2	1103	5	12	3	12	-3	multi-exon	FALSE	canonical	3	404	junction_1	42.7346463656832	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATGGCTGGATCTTTTA	NA	False	NA	-7	True	ATTAAA	-13	NA	31321838	31208375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_31208966_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUSG00000000296.9_1	chr10	-	1188	7	FSM	ENSMUSG00000000296.9	ENSMUST00000000305.7	1308	7	116	4	12	-3	multi-exon	FALSE	canonical	3	31	junction_2	224.403654159196	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATGGCTGGATCTTTTA	NA	False	NA	-7	True	ATTAAA	-13	NA	31321838	31208375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUSG00000000296.9_4	chr10	-	1170	6	FSM	ENSMUSG00000000296.9	ENSMUST00000213639.2	827	6	-66	-277	-8	-3	multi-exon	FALSE	canonical	3	30	junction_2	219.239230066154	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATGGCTGGATCTTTTA	NA	False	NA	-7	True	ATTAAA	-13	NA	31321859	31208375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_31208966_31214180_31214242_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUSG00000000296.9_6	chr10	-	1195	8	FSM	ENSMUSG00000000296.9	ENSMUST00000213528.2	969	8	21	-247	-15	-3	multi-exon	FALSE	canonical	3	22	junction_3	226.139563192327	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATGGCTGGATCTTTTA	NA	False	NA	-7	True	ATTAAA	-13	NA	31321830	31208375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31219007_31219023_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUSG00000000301.17_0	chr11	-	961	7	FSM	ENSMUSG00000000301.17	ENSMUST00000102693.9	961	7	-4	4	0	-4	multi-exon	FALSE	canonical	3	19	junction_6	8.67307455417179	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACCTCTCTGGTCTCCTT	NA	False	NA	-3	True	AATAAA	-15	NA	59937311	59861443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59922538_59922647_59937165
ENSMUSG00000000301.17_1	chr11	-	988	7	FSM	ENSMUSG00000000301.17	ENSMUST00000000310.14	953	7	-39	4	-27	-4	multi-exon	FALSE	canonical	0	0	junction_6	14.4846662217517	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACCTCTCTGGTCTCCTT	NA	False	NA	-3	True	AATAAA	-15	NA	59937342	59861443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59922538_59922647_59937169
ENSMUSG00000000303.13_0	chr8	+	4406	16	FSM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	17	7	-11	-7	multi-exon	FALSE	canonical	3	808	junction_8	93.5918799896658	2140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTGTGAGGCTCACT	5066	False	NA	19	True	ATTAAA	-11	NA	107329999	107396871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
ENSMUSG00000000303.13_100	chr8	+	1518	1	ISM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	65371	7	64579	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTGTGAGGCTCACT	NA	False	NA	19	True	ATTAAA	-11	NA	107395353	107396871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107395400_107396900
ENSMUSG00000000303.13_56	chr8	+	4326	15	ISM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	841	7	49	-7	3prime_fragment	FALSE	canonical	3	808	junction_7	90.1298383172967	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTGTGAGGCTCACT	5890	False	NA	19	True	ATTAAA	-11	NA	107330823	107396871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
ENSMUSG00000000303.13_76	chr8	+	4042	14	ISM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	45718	7	44926	-7	3prime_fragment	FALSE	canonical	3	808	junction_6	88.0550527096106	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTGTGAGGCTCACT	1364	False	NA	19	True	ATTAAA	-11	NA	107375700	107396871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
ENSMUSG00000000305.13_1	chr2	+	6007	14	ISM	ENSMUSG00000000305.13	ENSMUST00000000314.13	6388	16	337839	5	3107	-5	3prime_fragment	FALSE	canonical	3	15	junction_11	4.62690868979156	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGTCAGTCTCCCGACT	7109	False	NA	-1	True	AATAAA	-11	NA	179422062	179541161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_179422274_179439250_179439422_179484761_179484918_179489012_179489158_179501909_179502083_179515864_179516003_179523602_179523789_179527646_179527901_179528512_179528656_179530881_179531116_179532535_179532770_179534984_179535125_179535820_179535986_179537504
ENSMUSG00000000305.13_10	chr2	+	6379	16	NNC	ENSMUSG00000000305.13	novel	6388	16	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8.29028883024523	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGTCAGTCTCCCGACT	NA	False	NA	-1	True	AATAAA	-11	NA	179084229	179541161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_179084472_179086492_179086605_179422044_179422274_179439250_179439422_179484761_179484918_179489012_179489158_179501909_179502083_179515864_179516003_179523602_179523789_179527646_179527901_179528512_179528656_179530881_179531116_179532535_179532770_179534984_179535125_179535820_179535986_179537504
ENSMUSG00000000305.13_16	chr2	+	1376	5	ISM	ENSMUSG00000000305.13	ENSMUST00000000314.13	6388	16	446684	3033	-4769	191	3prime_fragment	FALSE	canonical	3	15	junction_2	6.05702071979286	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAATGTGTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	179530907	179538133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_179531116_179532535_179532770_179534984_179535125_179535820_179535986_179537504
ENSMUSG00000000305.13_18	chr2	+	3822	2	FSM	ENSMUSG00000000305.13	ENSMUST00000129659.2	747	2	144	-3219	119	-5	multi-exon	FALSE	canonical	3	32	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGTCAGTCTCCCGACT	NA	False	NA	-1	True	AATAAA	-11	NA	179535820	179541161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_179535986_179537504
ENSMUSG00000000305.13_6	chr2	+	4750	7	ISM	ENSMUSG00000000305.13	ENSMUST00000000314.13	6388	16	443504	1	-7949	-1	3prime_fragment	FALSE	canonical	3	15	junction_4	5.90903263374528	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCAGTCTCCCGACTTGCT	NA	False	NA	3	True	AATAAA	-15	NA	179527727	179541165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_179527901_179528512_179528656_179530881_179531116_179532535_179532770_179534984_179535125_179535820_179535986_179537504
ENSMUSG00000000305.13_7	chr2	+	4575	6	ISM	ENSMUSG00000000305.13	ENSMUST00000000314.13	6388	16	444287	5	-7166	-5	3prime_fragment	FALSE	canonical	3	15	junction_3	6.24179461373089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGTCAGTCTCCCGACT	NA	False	NA	-1	True	AATAAA	-11	NA	179528510	179541161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_179528656_179530881_179531116_179532535_179532770_179534984_179535125_179535820_179535986_179537504
ENSMUSG00000000305.13_9	chr2	+	2322	1	ISM	ENSMUSG00000000305.13	ENSMUST00000000314.13	6388	16	454616	5	3138	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGTCAGTCTCCCGACT	NA	False	NA	-1	True	AATAAA	-11	NA	179538839	179541161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_179538800_179541200
ENSMUSG00000000308.15_0	chr2	+	1513	10	FSM	ENSMUSG00000000308.15	ENSMUST00000078222.9	1518	10	2	3	2	-2	multi-exon	FALSE	canonical	3	125	junction_1	32.5602954456217	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTGTCTGTGTTATTTC	803	False	NA	29	True	AGTAAA	-17	NA	121188258	121194215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121188341_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
ENSMUSG00000000308.15_3	chr2	+	1591	9	FSM	ENSMUSG00000000308.15	ENSMUST00000000317.13	1620	9	28	1	-18	0	multi-exon	FALSE	canonical	3	189	junction_3	17.8881070826401	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTCTGTGTTATTTCTA	1663	False	NA	31	True	AGTAAA	-19	NA	121189118	121194217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
ENSMUSG00000000308.15_5	chr2	+	1528	10	NIC	ENSMUSG00000000308.15	novel	1518	10	NA	NA	12	-2	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	65.8743660217344	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTGTCTGTGTTATTTC	877	False	NA	29	True	AGTAAA	-17	NA	121188332	121194215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_121188430_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
ENSMUSG00000000320.11_0	chr11	-	2343	14	FSM	ENSMUSG00000000320.11	ENSMUST00000000329.9	3001	14	13	645	1	-645	multi-exon	FALSE	canonical	3	19	junction_6	3.422860840198	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTTCACATGTCACAGGG	7415	False	NA	-1	True	NA	NA	NA	70146166	70132927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70133391_70133510_70133682_70133802_70133904_70136686_70136809_70137720_70137891_70138085_70138173_70140872_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
ENSMUSG00000000320.11_3	chr11	-	2049	13	ISM	ENSMUSG00000000320.11	ENSMUST00000000329.9	3001	14	835	644	823	-644	3prime_fragment	FALSE	canonical	3	19	junction_6	3.26173096513015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCACATGTCACAGGGT	8237	False	NA	0	True	NA	NA	NA	70145344	70132926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_70133391_70133510_70133682_70133802_70133904_70136686_70136809_70137720_70137891_70138085_70138173_70140872_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234
ENSMUSG00000000320.11_6	chr11	-	1370	6	ISM	ENSMUSG00000000320.11	ENSMUST00000000329.9	3001	14	7749	647	7737	-647	3prime_fragment	FALSE	canonical	3	25	junction_5	2.49799919935936	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTTCACATGTCACAG	NA	False	NA	-3	True	NA	NA	NA	70138430	70132929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_70133391_70133510_70133682_70133802_70133904_70136686_70136809_70137720_70137891_70138085
ENSMUSG00000000320.11_7	chr11	-	1532	8	FSM	ENSMUSG00000000320.11	ENSMUST00000108574.3	2314	8	7	775	7	-775	multi-exon	FALSE	canonical	3	24	junction_3	2.55550625999976	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATCTGGCAGTCTCACA	7421	False	NA	NA	False	NA	NA	NA	70146160	70140563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
ENSMUSG00000000320.11_8	chr11	-	2247	13	NIC	ENSMUSG00000000320.11	novel	3001	14	NA	NA	45	-575	combination_of_known_splicesites	FALSE	canonical	3	3	junction_3	7.43863786814047	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGTGCACTCCTTTAATC	7459	False	NA	69	True	NA	NA	NA	70146122	70132857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_70133391_70133510_70133682_70133802_70133904_70137720_70137891_70138085_70138173_70140872_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
ENSMUSG00000000326.14_12	chr16	-	1674	6	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	85	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.2773504263389	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAAGAAATTCACTGAGT	3973	False	NA	NA	False	ATTAAA	-16	NA	18245269	18225637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_18226058_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
ENSMUSG00000000326.14_29	chr16	-	1701	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	121	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	81.8299388298005	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAAGAAATTCACTGAGT	-2	True	NA	NA	False	ATTAAA	-16	NA	18245233	18225637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_18226048_18226278_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ENSMUSG00000000326.14_52	chr16	-	1200	6	FSM	ENSMUSG00000000326.14	ENSMUST00000000335.12	1397	6	196	1	196	-1	multi-exon	FALSE	canonical	3	117	junction_5	48.2825020064205	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAAGGGG	4084	False	NA	NA	False	AAAAAG	-8	NA	18245158	18226294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ENSMUSG00000000326.14_8	chr16	-	1701	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	115	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.8299388298005	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAAGAAATTCACTGAGT	4003	False	NA	NA	False	ATTAAA	-16	NA	18245239	18225637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_18226058_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ENSMUSG00000000326.14_9	chr16	-	1716	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	107	-2	at_least_one_novel_splicesite	TRUE	non_canonical	1	14	junction_1	77.4849447742377	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAAGAAATTCACTGAGT	3995	False	NA	NA	False	ATTAAA	-16	NA	18245247	18225637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_18226049_18226278_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ENSMUSG00000000339.15_0	chr3	-	1463	11	FSM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	127	4	-16	-4	multi-exon	FALSE	canonical	3	261	junction_7	31.9274176844918	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATATGAGCTGCTGCTTT	NA	False	NA	-4	True	AATAAA	-16	NA	116301730	116282615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
ENSMUSG00000000339.15_13	chr3	-	1444	11	NIC	ENSMUSG00000000339.15	novel	1594	11	NA	NA	-18	-3	combination_of_known_junctions	FALSE	canonical	2	9	junction_8	93.6707531730155	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGAGCTGCTGCTTTT	NA	False	NA	-3	True	AATAAA	-17	NA	116301732	116282614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298096_116300483_116300628_116301399_116301501_116301593
ENSMUSG00000000340.11_0	chr3	+	3051	9	NIC	ENSMUSG00000000340.11	novel	3301	11	NA	NA	-5	-6	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	69.7387983836831	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATACTTTGTATGCCTTC	NA	False	NA	4	True	AATAAA	-13	NA	116306762	116343624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_116306841_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
ENSMUSG00000000340.11_1	chr3	+	3243	11	FSM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	52	6	3	-6	multi-exon	FALSE	canonical	3	173	junction_7	26.1091937830336	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATACTTTGTATGCCTTC	NA	False	NA	4	True	AATAAA	-13	NA	116306770	116343624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
ENSMUSG00000000340.11_2	chr3	+	3118	10	NIC	ENSMUSG00000000340.11	novel	3301	11	NA	NA	4	-6	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	66.6374009838059	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATACTTTGTATGCCTTC	NA	False	NA	4	True	AATAAA	-13	NA	116306771	116343624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_116306841_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
ENSMUSG00000000340.11_20	chr3	+	1555	1	ISM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	35351	6	28093	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATACTTTGTATGCCTTC	NA	False	NA	4	True	AATAAA	-13	NA	116342069	116343624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_116342100_116343600
ENSMUSG00000000340.11_5	chr3	+	3163	10	NIC	ENSMUSG00000000340.11	novel	3301	11	NA	NA	-4	-8	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	68.4805099784864	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCATACTTTGTATGCCT	NA	False	NA	2	True	AATAAA	-11	NA	116306772	116343622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_116306841_116313885_116314010_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
ENSMUSG00000000346.10_0	chr15	+	1836	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	288	11	288	-11	multi-exon	FALSE	canonical	0	0	junction_1	569.007518013212	1326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACACCTCACGCCAGCAT	NA	False	NA	7	True	AATAAA	-38	NA	100513517	100518631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
ENSMUSG00000000355.14_0	chrX	+	733	5	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	-7	96	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	253.564094461341	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGATGACTCAATGTCCT	NA	False	NA	8	True	ATTAAA	-21	NA	37689524	37702399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_37689656_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ENSMUSG00000000355.14_1	chrX	+	870	6	FSM	ENSMUSG00000000355.14	ENSMUST00000000365.3	783	6	-7	-80	-7	80	multi-exon	FALSE	canonical	3	489	junction_1	58.4486099064811	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATGGTAAATAACTCAACA	NA	False	NA	-8	True	ATTAAA	-5	NA	37689524	37702383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ENSMUSG00000000355.14_6	chrX	+	1230	6	NIC	ENSMUSG00000000355.14	novel	764	4	NA	NA	176	4	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	233.438985604376	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTAGTTTCAGAAATTATT	NA	False	NA	21	True	AATAAA	-23	NA	37689707	37702307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_37690275_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ENSMUSG00000000355.14_8	chrX	+	745	5	ISM	ENSMUSG00000000355.14	ENSMUST00000000365.3	783	6	1274	-86	630	86	3prime_fragment	FALSE	canonical	3	553	junction_1	38.3886376418857	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAACTCAACAGATGAC	NA	False	NA	-2	True	ATTAAA	-11	NA	37690805	37702389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ENSMUSG00000000365.10_0	chr14	+	3522	26	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	349	junction_12	57.9852946875326	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640137	56726892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
ENSMUSG00000000365.10_12	chr14	+	5157	37	FSM	ENSMUSG00000000365.10	ENSMUST00000095793.3	5264	37	104	3	-12	-3	multi-exon	FALSE	canonical	3	48	junction_25	208.622769314721	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTAGTTCATGTTATT	NA	False	NA	14	True	AATAAA	-15	NA	56640141	56762486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56730574_56730862_56737884_56738049_56741374_56741495_56743383_56743465_56745274_56745401_56746735_56746793_56749667_56749785_56751492_56751662_56753792_56753929_56759830_56760021_56761762_56761863_56762269
ENSMUSG00000000365.10_14	chr14	+	4100	25	ISM	ENSMUSG00000000365.10	ENSMUST00000095793.3	5264	37	100	37252	-16	714	5prime_fragment	TRUE	canonical	3	349	junction_12	56.9559862964377	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAGATAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56640137	56725237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418
ENSMUSG00000000365.10_6	chr14	+	3404	25	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	115.170043365837	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640143	56726892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
ENSMUSG00000000374.9_1	chr10	-	4995	23	FSM	ENSMUSG00000000374.9	ENSMUST00000000384.8	5047	23	2	50	2	-50	multi-exon	FALSE	canonical	2	6	junction_11	3.08823413662964	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGATTGTAAATAGATGCT	NA	False	NA	10	True	AATAAA	-31	NA	78080473	78022608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_78023929_78024589_78024785_78029192_78029371_78032121_78032293_78033571_78033699_78034877_78034979_78036451_78036682_78037265_78037425_78038713_78038856_78039714_78040227_78043267_78043381_78043725_78043867_78045217_78045310_78046211_78046289_78046597_78046713_78047309_78047457_78050401_78050650_78052983_78053096_78056022_78056219_78058497_78058695_78064612_78064749_78067287_78067370_78080269
ENSMUSG00000000374.9_5	chr10	-	2071	6	ISM	ENSMUSG00000000374.9	ENSMUST00000000384.8	5047	23	45503	65	-39	-65	3prime_fragment	FALSE	canonical	2	8	junction_1	2.24499443206436	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGTGTGGAAGTCATAGA	8706	False	NA	-5	True	AATAAA	-16	NA	78034972	78022623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_78023929_78024589_78024785_78029192_78029371_78032121_78032293_78033571_78033699_78034877
ENSMUSG00000000374.9_7	chr10	-	5545	21	ISM	ENSMUSG00000000374.9	ENSMUST00000000384.8	5047	23	5	4566	5	1730	5prime_fragment	FALSE	canonical	2	6	junction_9	3.1559467676119	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTTGCTTAAAAAGTCT	NA	False	NA	NA	False	AATACA	-16	NA	78080470	78027124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_78029371_78032121_78032293_78033571_78033699_78034877_78034979_78036451_78036682_78037265_78037425_78038713_78038856_78039714_78040227_78043267_78043381_78043725_78043867_78045217_78045310_78046211_78046289_78046597_78046713_78047309_78047457_78050401_78050650_78052983_78053096_78056022_78056219_78058497_78058695_78064612_78064749_78067287_78067370_78080269
ENSMUSG00000000378.16_0	chr11	+	1840	10	FSM	ENSMUSG00000000378.16	ENSMUST00000000388.15	1858	10	14	4	-9	-2	multi-exon	FALSE	canonical	3	315	junction_9	41.5204843093617	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATCTCCAGTTGTCAAGC	NA	False	NA	11	True	AAAACA	-23	NA	6496900	6546740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_6497030_6519963_6520138_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
ENSMUSG00000000378.16_1	chr11	+	1669	9	NIC	ENSMUSG00000000378.16	novel	1858	10	NA	NA	-11	-1	combination_of_known_junctions	TRUE	canonical	3	30	junction_1	133.856266196245	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTCCAGTTGTCAAGCA	NA	False	NA	12	True	AAAACA	-24	NA	6496898	6546741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_6497030_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
ENSMUSG00000000384.16_1	chr11	-	2288	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	0	2	0	0	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGCTATCTTCCCAGG	NA	False	NA	-29	True	AATAAA	-17	NA	6576043	6566424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ENSMUSG00000000384.16_10	chr11	-	2365	12	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_8	147.44311131545	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGCTATCTTCCCAGG	NA	False	NA	-29	True	AATAAA	-17	NA	6576042	6566424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ENSMUSG00000000384.16_21	chr11	-	2247	12	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	154.867151813236	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576058	6566422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6576022
ENSMUSG00000000384.16_31	chr11	-	2615	12	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	233	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_11	140.71599672936	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGCTATCTTCCCAGG	NA	False	NA	-29	True	AATAAA	-17	NA	6575789	6566424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575383
ENSMUSG00000000384.16_4	chr11	-	2319	13	FSM	ENSMUSG00000000384.16	ENSMUST00000156969.8	2324	13	1	4	1	-3	multi-exon	FALSE	canonical	3	74	junction_1	134.990406037697	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACATGGGCCACTGGCTT	NA	False	NA	-9	True	AATAAA	-15	NA	6576042	6565601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ENSMUSG00000000386.17_10	chr16	-	1666	3	ISM	ENSMUSG00000000386.17	ENSMUST00000232193.3	908	5	5941	-1089	1326	-5	3prime_fragment	TRUE	canonical	3	5	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGACACTTGCATGATTT	NA	False	NA	NA	False	AATAAA	-10	NA	97252751	97248241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_97249573_97251567_97251826_97252674
ENSMUSG00000000399.11_1	chr6	-	1211	11	FSM	ENSMUSG00000000399.11	ENSMUST00000205002.3	1445	11	0	234	0	41	multi-exon	FALSE	canonical	3	1115	junction_7	83.3223259396904	744	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCAAGTGTCTTTCTTGA	NA	False	NA	-7	True	ATTAAA	-19	NA	126826088	126798917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_126799153_126801898_126801966_126804502_126804599_126809434_126809512_126811391_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821925_126826026
ENSMUSG00000000402.3_0	chrX	-	2692	12	FSM	ENSMUSG00000000402.3	ENSMUST00000000412.3	2704	12	10	2	10	-2	multi-exon	FALSE	canonical	2	11	junction_6	3.09892009982897	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCACTGTTGAAACACTTT	NA	False	NA	NA	False	AATAAA	-13	NA	165368706	165306004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_165306968_165310309_165310576_165314967_165315070_165319195_165319277_165321409_165321731_165329416_165329540_165331818_165331954_165335420_165335541_165339965_165340086_165345937_165346031_165351404_165351518_165368451
ENSMUSG00000000402.3_6	chrX	-	1970	5	ISM	ENSMUSG00000000402.3	ENSMUST00000000412.3	2704	12	46748	3	46748	-3	3prime_fragment	FALSE	canonical	3	14	junction_2	1.78535710713571	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCACTGTTGAAACACTT	5475	False	NA	NA	False	AATAAA	-12	NA	165321968	165306005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_165306968_165310309_165310576_165314967_165315070_165319195_165319277_165321409
ENSMUSG00000000409.15_0	chr4	-	1585	7	ISM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	1842	11	-71	-6	3prime_fragment	FALSE	canonical	3	108	junction_2	13.2214052035158	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTACATTTTTCTACTGC	NA	False	NA	-6	True	NA	NA	NA	129450323	129442147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080
ENSMUSG00000000409.15_3	chr4	-	1302	6	ISM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	2411	7	-113	-2	3prime_fragment	FALSE	canonical	3	108	junction_2	14.0513344562002	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTTTCTACTGCATAC	NA	False	NA	-2	True	NA	NA	NA	129449754	129442143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645
ENSMUSG00000000409.15_8	chr4	-	2177	12	FSM	ENSMUSG00000000409.15	ENSMUST00000067240.11	2185	12	-1	9	-1	-9	multi-exon	FALSE	canonical	3	10	junction_9	59.1335510476424	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTTGTACATTTTTCTAC	NA	False	NA	-9	True	NA	NA	NA	129452185	129442150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873
ENSMUSG00000000409.15_9	chr4	-	2072	13	FSM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	-12	14	7	-9	multi-exon	TRUE	canonical	3	4	junction_12	60.4484973620795	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTTGTACATTTTTCTAC	NA	False	NA	-9	True	NA	NA	NA	129452177	129442150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873_129451984_129452080
ENSMUSG00000000416.17_0	chr6	-	5810	23	FSM	ENSMUSG00000000416.17	ENSMUST00000090601.12	5183	23	-25	-602	-3	-54	multi-exon	FALSE	canonical	0	0	junction_21	3.78366432211941	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACGCCTTCAATATATTTC	-14	True	NA	NA	False	ATTAAA	-13	NA	18514845	18366617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_18367616_18374522_18374622_18375935_18376069_18378365_18378430_18380461_18380639_18380966_18381173_18382744_18382924_18388026_18388215_18389081_18389235_18397331_18397432_18397516_18397604_18405182_18405263_18406454_18406551_18408480_18408757_18414180_18414299_18420764_18421017_18423829_18423981_18426034_18426135_18427437_18427642_18433818_18435446_18448246_18448469_18501947_18502056_18514653
ENSMUSG00000000416.17_5	chr6	-	2396	1	NIC	ENSMUSG00000000416.17	novel	4224	21	NA	NA	116	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	9520	False	NA	NA	False	ACTAAA	-15	NA	18434334	18431938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_18431900_18434300
ENSMUSG00000000416.17_6	chr6	-	4023	4	FSM	ENSMUSG00000000416.17	ENSMUST00000139557.2	3982	4	-42	1	2	-1	multi-exon	FALSE	canonical	0	0	junction_2	2.62466929133727	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAGAAAAAAAAAAAA	-9	True	NA	NA	False	ACTAAA	-14	NA	18514840	18431939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_18435446_18448246_18448469_18501947_18502056_18514653
ENSMUSG00000000420.16_10	chr18	+	3867	13	FSM	ENSMUSG00000000420.16	ENSMUST00000170243.8	4108	13	47	194	47	-194	multi-exon	FALSE	canonical	3	467	junction_1	61.8270437052697	1026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCAGATTTTTGTACCC	NA	False	NA	24	True	AATAAA	-17	NA	24338870	24419673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_24339138_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
ENSMUSG00000000420.16_2	chr18	+	3797	13	FSM	ENSMUSG00000000420.16	ENSMUST00000000430.14	3977	13	-22	202	-22	-194	multi-exon	FALSE	canonical	3	33	junction_1	166.935283534934	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCAGATTTTTGTACCC	NA	False	NA	24	True	AATAAA	-17	NA	24338378	24419673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_24338576_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
ENSMUSG00000000420.16_9	chr18	+	3991	13	NIC	ENSMUSG00000000420.16	novel	4108	13	NA	NA	2	-194	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	149.779907976115	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCAGATTTTTGTACCC	NA	False	NA	24	True	AATAAA	-17	NA	24339017	24419673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_24339409_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
ENSMUSG00000000439.10_0	chr6	+	2247	8	FSM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	22	3961	22	-3961	multi-exon	FALSE	canonical	2	438	junction_3	36.5396066911353	667	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCCAAAATCATTAAGA	NA	False	NA	NA	False	AATAAA	-10	NA	115578884	115595624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_115578975_115586541_115586671_115587479_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554
ENSMUSG00000000441.18_0	chr6	-	2929	17	FSM	ENSMUSG00000000441.18	ENSMUST00000000451.14	3070	17	112	29	112	-1	multi-exon	FALSE	canonical	3	610	junction_8	72.4119076878934	1350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTAATGGCTACTGACT	8256	False	NA	-29	True	AATAAA	-14	NA	115653484	115595558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115653196
ENSMUSG00000000486.14_0	chr7	-	1554	10	NIC	ENSMUSG00000000486.14	novel	1486	11	NA	NA	16	3	intron_retention	FALSE	canonical	3	221	junction_9	51.3653099058927	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGCCGGAGTCTTCTTC	NA	False	NA	-4	True	AATAAA	-21	NA	126817627	126813615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817578
ENSMUSG00000000486.14_1	chr7	-	1456	11	FSM	ENSMUSG00000000486.14	ENSMUST00000106314.8	1486	11	45	-15	18	0	multi-exon	FALSE	canonical	3	221	junction_10	48.9043965303734	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	126817625	126813618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817578
ENSMUSG00000000486.14_31	chr7	-	498	1	FSM	ENSMUSG00000000486.14	ENSMUST00000205570.2	713	1	207	8	207	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATGCATCGTCTGTCC	NA	False	NA	NA	False	AATAAA	-22	NA	126832095	126831597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126831600_126832100
ENSMUSG00000000486.14_5	chr7	-	602	3	ISM	ENSMUSG00000000486.14	ENSMUST00000106313.8	1285	10	2910	-196	-268	0	3prime_fragment	FALSE	canonical	3	342	junction_2	15	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	126814565	126813618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126814017_126814120_126814212_126814452
ENSMUSG00000000486.14_7	chr7	-	1509	11	NIC	ENSMUSG00000000486.14	novel	1486	11	NA	NA	2	0	combination_of_known_junctions	TRUE	canonical	3	14	junction_10	96.582658898997	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	126817596	126813618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817496
ENSMUSG00000000489.8_0	chr15	-	2404	7	FSM	ENSMUSG00000000489.8	ENSMUST00000000500.8	2944	7	525	15	525	-15	multi-exon	TRUE	canonical	2	5	junction_6	4.63381292481928	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCCACAAAACAAAACCACG	NA	False	NA	NA	False	TTTAAA	-17	NA	79898484	79880089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79898136
ENSMUSG00000000489.8_1	chr15	-	2149	7	NNC	ENSMUSG00000000489.8	novel	2944	7	NA	NA	236	-26	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	4.63381292481928	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGCCACAAA	NA	False	NA	NA	False	TTTAAA	-36	NA	79897168	79880100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79897064
ENSMUSG00000000530.17_0	chr15	+	1733	9	ISM	ENSMUSG00000000530.17	ENSMUST00000120754.2	3506	10	478	1704	478	-6	3prime_fragment	FALSE	canonical	0	0	junction_1	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCGATCTGCCTCCGTC	NA	False	NA	NA	False	AATACA	-10	NA	101032491	101041513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101032625_101033178_101033425_101033629_101033842_101034008_101034109_101034864_101035012_101035244_101035521_101036088_101036287_101038947_101039079_101041223
ENSMUSG00000000531.6_0	chr15	+	1995	8	FSM	ENSMUSG00000000531.6	ENSMUST00000000543.6	2033	8	36	2	36	-2	multi-exon	FALSE	canonical	3	148	junction_1	31.968096341094	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTGTCAGTGTGGTAA	6277	False	NA	10	True	TATAAA	-19	NA	101122104	101130635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_101122426_101124794_101124845_101126712_101126768_101126871_101126975_101128414_101128509_101128605_101128673_101128865_101128933_101129397
ENSMUSG00000000531.6_15	chr15	+	1699	7	NNC	ENSMUSG00000000531.6	novel	2033	8	NA	NA	4137	-2	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	64.6838465151849	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTGTCAGTGTGGTAA	NA	False	NA	10	True	TATAAA	-19	NA	101126205	101130635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_101126281_101126712_101126768_101126871_101126975_101128414_101128509_101128605_101128673_101128865_101128933_101129397
ENSMUSG00000000531.6_23	chr15	+	749	1	ISM	ENSMUSG00000000531.6	ENSMUST00000000543.6	2033	8	7819	1	7819	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTGTCAGTGTGGTAAC	950	False	NA	11	True	TATAAA	-20	NA	101129887	101130636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101129900_101130600
ENSMUSG00000000531.6_6	chr15	+	2459	7	ISM	ENSMUSG00000000531.6	ENSMUST00000000543.6	2033	8	37	2	37	-2	intron_retention	FALSE	canonical	3	148	junction_1	34.0069437353935	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTGTCAGTGTGGTAA	6278	False	NA	10	True	TATAAA	-19	NA	101122105	101130635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101122426_101124794_101124845_101126712_101126768_101126871_101126975_101128414_101128509_101128605_101128673_101128865
ENSMUSG00000000532.12_0	chr15	+	4363	9	FSM	ENSMUSG00000000532.12	ENSMUST00000000544.12	4418	9	49	6	49	-6	multi-exon	FALSE	canonical	3	11	junction_8	3.66571957465379	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGCTCTGATCCCGTC	NA	False	NA	15	True	ATTAAA	-12	NA	101071996	101111559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_101072117_101091812_101092053_101092689_101092939_101096664_101096896_101099858_101100027_101100818_101100976_101102333_101102459_101106960_101107092_101108617
ENSMUSG00000000532.12_7	chr15	+	1497	1	ISM	ENSMUSG00000000532.12	ENSMUST00000000544.12	4418	9	38113	8	38113	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAACTGCTCTGATCCCG	NA	False	NA	13	True	ATTAAA	-10	NA	101110060	101111557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101110100_101111600
ENSMUSG00000000538.19_0	chr11	-	4973	15	FSM	ENSMUSG00000000538.19	ENSMUST00000102683.11	4999	15	23	3	23	-3	multi-exon	FALSE	canonical	3	31	junction_8	7.39553091745416	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGCCTGTGTGATGTC	NA	False	NA	-4	True	AATAAA	-11	NA	60243708	60117543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60121068_60121926_60121964_60123723_60123784_60132643_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60171024_60171110_60243582
ENSMUSG00000000538.19_14	chr11	-	2127	13	FSM	ENSMUSG00000000538.19	ENSMUST00000064019.15	2151	13	27	-3	27	3	multi-exon	FALSE	canonical	1	2	junction_1	13.4935684268057	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATAGTCATGTGTGTATCT	NA	False	NA	NA	False	AATAAA	-16	NA	60243704	60131392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60132172_60132643_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60171024_60171110_60243582
ENSMUSG00000000538.19_2	chr11	-	3024	1	ISM	ENSMUSG00000000538.19	ENSMUST00000095254.12	4940	14	123164	4	1606	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGCCTGTGTGATGTC	NA	False	NA	-4	True	AATAAA	-11	NA	60120567	60117543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_60117500_60120600
ENSMUSG00000000538.19_7	chr11	-	4884	14	NIC	ENSMUSG00000000538.19	novel	4999	15	NA	NA	27	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	13.4194947832132	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGCCTGTGTGATGTC	NA	False	NA	-4	True	AATAAA	-11	NA	60243704	60117543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60121068_60121926_60121964_60123723_60123784_60132643_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60243582
ENSMUSG00000000544.15_0	chr1	+	2302	7	FSM	ENSMUSG00000000544.15	ENSMUST00000060833.14	2515	7	206	7	-23	-6	multi-exon	FALSE	canonical	3	176	junction_6	19.1398362932741	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCACTTTTCTTTGTTC	NA	False	NA	3	True	AATAAA	-12	NA	165958012	165994072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
ENSMUSG00000000544.15_5	chr1	+	2173	6	NIC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	1	-6	intron_retention	FALSE	canonical	3	10	junction_1	77.1974092829546	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCACTTTTCTTTGTTC	NA	False	NA	3	True	AATAAA	-12	NA	165957986	165994072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_165958174_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
ENSMUSG00000000552.11_0	chr15	-	2252	7	FSM	ENSMUSG00000000552.11	ENSMUST00000229551.2	2221	7	-18	-13	-18	0	multi-exon	FALSE	canonical	3	115	junction_6	27.1456974286698	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGACTCAGACTGTCT	8798	False	NA	-12	True	AATAAA	-24	NA	103231955	103222321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103223653_103223787_103223884_103224053_103224224_103224308_103224552_103226375_103226539_103228716_103228828_103231817
ENSMUSG00000000552.11_15	chr15	-	747	1	ISM	ENSMUSG00000000552.11	ENSMUST00000229373.2	2348	8	19684	2	8867	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCCAAGGACTCAGACTGT	NA	False	NA	-14	True	AATAAA	-22	NA	103223070	103222323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_103222300_103223100
ENSMUSG00000000552.11_2	chr15	-	2362	8	NNC	ENSMUSG00000000552.11	novel	2221	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	73.4738604080751	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGACTCAGACTGTCT	8807	False	NA	-12	True	AATAAA	-24	NA	103231946	103222321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_103223653_103223787_103223884_103224053_103224224_103224308_103224552_103226375_103226539_103228716_103228828_103229496_103229616_103231817
ENSMUSG00000000552.11_3	chr15	-	2313	8	FSM	ENSMUSG00000000552.11	ENSMUST00000168828.3	2298	8	-15	0	-15	0	multi-exon	FALSE	canonical	3	18	junction_6	68.2405708519799	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGACTCAGACTGTCT	6904	False	NA	-12	True	AATAAA	-24	NA	103248535	103222321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103223653_103223787_103223884_103224053_103224224_103224308_103224552_103226375_103226539_103228716_103228828_103241491_103241629_103248473
ENSMUSG00000000555.9_0	chr15	-	4203	30	FSM	ENSMUSG00000000555.9	ENSMUST00000023128.8	4382	30	169	10	154	-10	multi-exon	FALSE	canonical	3	172	junction_15	17.8822280065433	456	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGACCAAAGTTGCAGTCT	NA	False	NA	-8	True	AATAAA	-18	NA	103275021	103252722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103253780_103254378_103254502_103255007_103255110_103256097_103256212_103256318_103256403_103258038_103258192_103258591_103258698_103258800_103258882_103259000_103259081_103259190_103259284_103259372_103259524_103259804_103259873_103259967_103260106_103260441_103260597_103260684_103260741_103260910_103261013_103261342_103261389_103261569_103261762_103262000_103262210_103262473_103262527_103262694_103262752_103264352_103264397_103264503_103264549_103264742_103264869_103265205_103265252_103265346_103265409_103265618_103265740_103265874_103265988_103267476_103267608_103274726
ENSMUSG00000000561.15_0	chr3	+	1974	10	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-20	661	combination_of_known_junctions	FALSE	canonical	3	115	junction_8	275.350057782793	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCCTCCCCAGAGCTG	NA	False	NA	11	True	AATAAA	-15	NA	105866803	105875504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873173_105873672_105873742_105874478
ENSMUSG00000000561.15_10	chr3	+	2749	3	ISM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	6426	-3	1346	3	3prime_fragment	FALSE	canonical	3	920	junction_1	42	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGCTTTTGTTGTTGTC	2205	False	NA	15	True	AATAAA	-34	NA	105873110	105877079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_105873190_105873672_105873742_105874478
ENSMUSG00000000561.15_11	chr3	+	1845	1	ISM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	8151	396	3071	-396	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCAAATCTGCTTGGGG	3930	False	NA	-1	True	AATAAA	-10	NA	105874835	105876680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_105874800_105876700
ENSMUSG00000000561.15_12	chr3	+	1133	1	ISM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	9259	0	4179	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAATTGCTTTTGTTGTT	5038	False	NA	12	True	AATAAA	-31	NA	105875943	105877076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_105875900_105877100
ENSMUSG00000000561.15_4	chr3	+	1994	10	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-27	668	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	305.26968445444	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCAGAGCTGTTACTTA	NA	False	NA	18	True	AATAAA	-22	NA	105866796	105875511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_105867004_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
ENSMUSG00000000561.15_5	chr3	+	1546	8	ISM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	2302	1566	49	667	3prime_fragment	FALSE	canonical	3	910	junction_2	55.9967200205621	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCCAGAGCTGTTACTT	NA	False	NA	17	True	AATAAA	-21	NA	105868986	105875510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
ENSMUSG00000000561.15_7	chr3	+	1609	2	ISM	ENSMUSG00000105852.5	ENSMUST00000137168.3	1580	4	-272	8223	-272	-8223	5prime_fragment	FALSE	canonical	3	1004	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCCTCCCCAGAGCTG	2253	False	NA	11	True	AATAAA	-15	NA	105873158	105875504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_105873742_105874478
ENSMUSG00000000561.15_8	chr3	+	1392	6	ISM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	5082	1573	2	660	3prime_fragment	FALSE	canonical	3	920	junction_4	58.2326368971902	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTCCCTCCCCAGAGCT	861	False	NA	10	True	AATAAA	-14	NA	105871766	105875503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
ENSMUSG00000000563.18_2	chr3	-	1107	7	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	856	8	3	-4	3prime_fragment	FALSE	canonical	3	4041	junction_4	350.10446853602	1978	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAATTTATAAGTTTC	NA	False	NA	-28	True	AATAAA	-8	NA	105866559	105850021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
ENSMUSG00000000567.6_0	chr11	+	2317	3	FSM	ENSMUSG00000000567.6	ENSMUST00000000579.3	4135	3	3	1815	3	-1815	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTTTTAGTATGTACT	NA	False	NA	NA	False	ATTAAA	-39	NA	112673052	112676771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_112673842_112674634_112674889_112675497
ENSMUSG00000000568.16_0	chr5	-	1725	9	FSM	ENSMUSG00000000568.16	ENSMUST00000172361.8	6811	9	12	5074	8	-6	multi-exon	FALSE	canonical	3	2301	junction_7	859.13983145935	1743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAATGTATTGGCTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	100126785	100108867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100109193_100110373_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
ENSMUSG00000000568.16_10	chr5	-	1521	7	FSM	ENSMUSG00000000568.16	ENSMUST00000072750.13	1537	7	9	7	8	-6	multi-exon	FALSE	canonical	3	1409	junction_2	1330.01989333493	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAATGTATTGGCTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	100126785	100108867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100126250
ENSMUSG00000000568.16_15	chr5	-	2908	8	NIC	ENSMUSG00000000568.16	novel	6811	9	NA	NA	8	-4	intron_retention	FALSE	canonical	3	2301	junction_6	866.95323885856	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTATTGGCTCTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	100126785	100108865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
ENSMUSG00000000568.16_2	chr5	-	1578	8	FSM	ENSMUSG00000000568.16	ENSMUST00000019128.15	2000	8	11	411	8	-6	multi-exon	FALSE	canonical	3	1409	junction_2	1208.23732295085	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAATGTATTGGCTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	100126785	100108867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
ENSMUSG00000000568.16_4	chr5	-	1668	8	FSM	ENSMUSG00000000568.16	ENSMUST00000112939.10	1670	8	-9	11	8	-6	multi-exon	FALSE	canonical	3	1800	junction_7	925.260845736521	1291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAATGTATTGGCTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	100126785	100108867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100109193_100110373_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100126250
ENSMUSG00000000579.15_2	chr17	+	691	5	FSM	ENSMUSG00000000579.15	ENSMUST00000092966.5	2589	5	110	1788	-11	342	multi-exon	TRUE	canonical	3	5304	junction_1	1714.27572169707	1011	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6869179	6875290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874551_6874899
ENSMUSG00000000581.9_0	chr11	+	1042	5	FSM	ENSMUSG00000000581.9	ENSMUST00000000594.9	2981	5	-9	1948	6	604	multi-exon	FALSE	canonical	3	609	junction_3	54.4908249157599	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACACGGTTGTATGTC	7322	False	NA	20	True	AATAAA	-21	NA	17207584	17217228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_17207659_17212647_17212795_17213608_17213676_17213950_17214007_17216530
ENSMUSG00000000594.8_1	chr11	+	2032	4	FSM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	-36	2131	-36	-2131	multi-exon	FALSE	canonical	3	325	junction_3	15.195028426722	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGGCTCCTTTTCTTG	NA	False	NA	22	True	AATAAA	-15	NA	54988904	55001724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203
ENSMUSG00000000594.8_9	chr11	+	252	1	ISM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	12532	2131	12532	-2131	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGGCTCCTTTTCTTG	NA	False	NA	22	True	AATAAA	-15	NA	55001472	55001724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_55001500_55001700
ENSMUSG00000000600.16_2	chr5	+	2971	17	NIC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	59.7316590574044	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATCTATTATTTAAACCA	7986	False	NA	6	True	AATAAA	-19	NA	3853184	3891355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
ENSMUSG00000000600.16_6	chr5	+	2928	17	FSM	ENSMUSG00000000600.16	ENSMUST00000080085.9	2930	17	0	2	0	-2	multi-exon	FALSE	canonical	0	0	junction_16	61.5435567301728	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTATTATTTAAACCATT	7985	False	NA	8	True	AATAAA	-21	NA	3853183	3891357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_3853484_3856464_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
ENSMUSG00000000605.10_0	chr7	-	4913	10	NIC	ENSMUSG00000000605.10	novel	2539	12	NA	NA	-1	-7	intron_retention	FALSE	canonical	3	23	junction_9	7.5129517797231	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGCCATTGTCTTTGGT	NA	False	NA	-8	True	ATTAAA	-14	NA	7301771	7285314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7301690
ENSMUSG00000000605.10_1	chr7	-	4246	12	ISM	ENSMUSG00000000605.10	ENSMUST00000000619.8	4607	13	764	1	0	-1	3prime_fragment	FALSE	canonical	2	21	junction_11	8.98943365042381	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTCTTTGGTGTCTTT	NA	False	NA	-2	True	ATTAAA	-20	NA	7301768	7285308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690
ENSMUSG00000000605.10_11	chr7	-	817	1	ISM	ENSMUSG00000000605.10	ENSMUST00000000619.8	4607	13	16403	5	13714	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCATTGTCTTTGGTGT	NA	False	NA	-6	True	ATTAAA	-16	NA	7286129	7285312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_7285300_7286100
ENSMUSG00000000605.10_13	chr7	-	4141	13	FSM	ENSMUSG00000000605.10	ENSMUST00000210061.2	2445	13	48	-1744	11	-2	multi-exon	FALSE	canonical	2	9	junction_5	11.9335544672249	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATTGTCTTTGGTGTCTT	NA	False	NA	-3	True	ATTAAA	-19	NA	7301757	7285309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294726_7294818_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690
ENSMUSG00000000605.10_17	chr7	-	274	2	ISM	ENSMUSG00000000605.10	ENSMUST00000210989.2	658	3	788	0	0	0	3prime_fragment	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCACGGACCGCTGTGAAA	NA	False	NA	NA	False	AATAAA	-20	NA	7301768	7300999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_7301196_7301690
ENSMUSG00000000605.10_31	chr7	-	3993	10	NIC	ENSMUSG00000000605.10	novel	2539	12	NA	NA	-4	-5	intron_retention	FALSE	canonical	3	8	junction_9	12.0503060767439	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCATTGTCTTTGGTGT	NA	False	NA	-6	True	ATTAAA	-16	NA	7301774	7285312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7301690
ENSMUSG00000000605.10_7	chr7	-	4093	11	ISM	ENSMUSG00000000605.10	ENSMUST00000210594.2	2539	12	487	-1788	-4	-5	3prime_fragment	FALSE	canonical	3	23	junction_10	8.12465383877984	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCATTGTCTTTGGTGT	NA	False	NA	-6	True	ATTAAA	-16	NA	7301774	7285312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7301690
ENSMUSG00000000605.10_8	chr7	-	3999	12	NIC	ENSMUSG00000000605.10	novel	2445	13	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	9	junction_5	11.8732980511554	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATTGTCTTTGGTGTCTT	NA	False	NA	-3	True	ATTAAA	-19	NA	7301770	7285309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294726_7294818_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7301690
ENSMUSG00000000627.16_0	chr6	-	4048	14	FSM	ENSMUSG00000000627.16	ENSMUST00000000641.15	4086	14	35	3	35	-3	multi-exon	FALSE	canonical	3	23	junction_9	5.49986551745215	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCAGCGGGCGTGGTTAT	NA	False	NA	-8	True	NA	NA	NA	82916715	82888868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_82891086_82891347_82891407_82894302_82894464_82894569_82894680_82894803_82895027_82895164_82895313_82895512_82895692_82896297_82896450_82896543_82896664_82907878_82907973_82912567_82912667_82912875_82912936_82914041_82914194_82916441
ENSMUSG00000000627.16_1	chr6	-	1846	1	ISM	ENSMUSG00000000627.16	ENSMUST00000000641.15	4086	14	26036	3	3853	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCAGCGGGCGTGGTTAT	NA	False	NA	-8	True	NA	NA	NA	82890714	82888868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_82888900_82890700
ENSMUSG00000000627.16_7	chr6	-	3677	13	ISM	ENSMUSG00000000627.16	ENSMUST00000000641.15	4086	14	2656	1	2432	-1	3prime_fragment	FALSE	canonical	3	23	junction_9	5.7227615711298	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCGGGCGTGGTTATTG	NA	False	NA	-6	True	NA	NA	NA	82914094	82888866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_82891086_82891347_82891407_82894302_82894464_82894569_82894680_82894803_82895027_82895164_82895313_82895512_82895692_82896297_82896450_82896543_82896664_82907878_82907973_82912567_82912667_82912875_82912936_82914041
ENSMUSG00000000628.11_0	chr6	-	5489	18	FSM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	19	5	19	-5	multi-exon	FALSE	canonical	3	435	junction_14	56.0328005768445	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATATTCAGTGTGTGAT	9417	False	NA	-6	True	AATAAA	-18	NA	82751416	82702010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
ENSMUSG00000000628.11_1	chr6	-	1881	1	ISM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	47544	5	-601	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	258	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATATTCAGTGTGTGAT	1478	False	NA	-6	True	AATAAA	-18	NA	82703891	82702010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_82702000_82703900
ENSMUSG00000000628.11_10	chr6	-	2929	4	ISM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	43573	5	-4572	-5	3prime_fragment	FALSE	canonical	3	581	junction_1	7.36357401145817	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATATTCAGTGTGTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	82707862	82702010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748
ENSMUSG00000000628.11_14	chr6	-	4104	11	ISM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	34835	5	-13310	-5	3prime_fragment	FALSE	canonical	3	476	junction_9	35.1153812452606	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATATTCAGTGTGTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	82716600	82702010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499
ENSMUSG00000000628.11_18	chr6	-	2559	2	ISM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	45609	5	-2536	-5	3prime_fragment	FALSE	canonical	3	581	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATATTCAGTGTGTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	82705826	82702010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_82704436_82705692
ENSMUSG00000000628.11_19	chr6	-	2783	3	ISM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	44786	5	-3359	-5	3prime_fragment	FALSE	canonical	3	581	junction_1	9	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATATTCAGTGTGTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	82706649	82702010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_82704436_82705692_82705927_82706525
ENSMUSG00000000628.11_23	chr6	-	3644	9	ISM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	37745	5	-10400	-5	3prime_fragment	FALSE	canonical	3	538	junction_5	22.1754368615367	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATATTCAGTGTGTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	82713690	82702010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510
ENSMUSG00000000628.11_6	chr6	-	4272	12	ISM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	31539	5	-16606	-5	3prime_fragment	FALSE	canonical	3	450	junction_11	45.485807431395	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATATTCAGTGTGTGAT	6756	False	NA	-6	True	AATAAA	-18	NA	82719896	82702010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783
ENSMUSG00000000631.21_1	chr11	+	7472	42	FSM	ENSMUSG00000000631.21	ENSMUST00000108375.9	7513	42	41	0	-14	0	multi-exon	FALSE	canonical	1	3	junction_10	31.5068522239413	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAAGTTTCCCTGCCTCTC	NA	False	NA	19	True	AATAAA	-20	NA	77654112	77756806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77654206_77668060_77669141_77708444_77708533_77708724_77708832_77708927_77709105_77709406_77709621_77709736_77709880_77710802_77710904_77711623_77711688_77711867_77712013_77713488_77713501_77714101_77714273_77714587_77714679_77714918_77715112_77715928_77716010_77718361_77718504_77718616_77718777_77720002_77720190_77720445_77720690_77723219_77723330_77727242_77727309_77731506_77731636_77732273_77732418_77732744_77732835_77732973_77733094_77733282_77733395_77733929_77734058_77734342_77734498_77736221_77736346_77736433_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516
ENSMUSG00000000631.21_12	chr11	+	7475	41	NIC	ENSMUSG00000000631.21	novel	6202	42	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	24.9639615245658	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAAGTTTCCCTGCCTCTC	NA	False	NA	19	True	AATAAA	-20	NA	77656434	77756806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_77656543_77668060_77669141_77708444_77708533_77708724_77708832_77708927_77709105_77709406_77709621_77709736_77709880_77710802_77710904_77711623_77711688_77711867_77712013_77714101_77714273_77714587_77714679_77714918_77715112_77715928_77716010_77718361_77718504_77718616_77718777_77720002_77720190_77720445_77720690_77723219_77723330_77727242_77727309_77731506_77731636_77732273_77732418_77732744_77732835_77732973_77733094_77733282_77733395_77733929_77734058_77734342_77734498_77736221_77736346_77736433_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516
ENSMUSG00000000631.21_14	chr11	+	6780	40	NIC	ENSMUSG00000000631.21	novel	7513	42	NA	NA	504	-2	combination_of_known_junctions	FALSE	canonical	3	99	junction_16	17.1184910270367	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAAGTTTCCCTGCCTC	NA	False	NA	17	True	AATAAA	-18	NA	77668645	77756804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_77669141_77708444_77708533_77708724_77708832_77708927_77709105_77709406_77709621_77709736_77709880_77710802_77710904_77711623_77711688_77711867_77712013_77714101_77714273_77714587_77714679_77714918_77715112_77715928_77716010_77718361_77718504_77718616_77718777_77720002_77720190_77720445_77720690_77723219_77723330_77727242_77727309_77731506_77731636_77732273_77732418_77732744_77732835_77732973_77733094_77733282_77733395_77733929_77734058_77734342_77734498_77736221_77736346_77736433_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516
ENSMUSG00000000631.21_3	chr11	+	7458	41	NIC	ENSMUSG00000000631.21	novel	7513	42	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	17.6113422259634	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAAGTTTCCCTGCCTC	NA	False	NA	17	True	AATAAA	-18	NA	77654112	77756804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_77654206_77668060_77669141_77708444_77708533_77708724_77708832_77708927_77709105_77709406_77709621_77709736_77709880_77710802_77710904_77711623_77711688_77711867_77712013_77714101_77714273_77714587_77714679_77714918_77715112_77715928_77716010_77718361_77718504_77718616_77718777_77720002_77720190_77720445_77720690_77723219_77723330_77727242_77727309_77731506_77731636_77732273_77732418_77732744_77732835_77732973_77733094_77733282_77733395_77733929_77734058_77734342_77734498_77736221_77736346_77736433_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516
ENSMUSG00000000631.21_34	chr11	+	3071	15	ISM	ENSMUSG00000000631.21	ENSMUST00000164334.8	5381	41	42149	-922	2591	-2	3prime_fragment	FALSE	canonical	3	121	junction_1	15.2958911382857	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAAGTTTCCCTGCCTC	NA	False	NA	17	True	AATAAA	-18	NA	77734349	77756804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_77734498_77736221_77736346_77736433_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516
ENSMUSG00000000631.21_38	chr11	+	2729	13	ISM	ENSMUSG00000000631.21	ENSMUST00000164334.8	5381	41	44301	-920	-3775	-4	3prime_fragment	FALSE	canonical	3	124	junction_8	14.9524709960892	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCACAAGTTTCCCTGCC	NA	False	NA	15	True	AATAAA	-16	NA	77736501	77756802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516
ENSMUSG00000000631.21_46	chr11	+	610	1	ISM	ENSMUSG00000000631.21	ENSMUST00000108375.9	7513	42	102123	2	7890	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAAGTTTCCCTGCCTC	9188	False	NA	17	True	AATAAA	-18	NA	77756194	77756804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_77756200_77756800
ENSMUSG00000000631.21_64	chr11	+	3621	20	ISM	ENSMUSG00000000631.21	ENSMUST00000164334.8	5381	41	40124	-922	566	-2	3prime_fragment	FALSE	canonical	3	114	junction_4	15.3848146162254	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAAGTTTCCCTGCCTC	9700	False	NA	17	True	AATAAA	-18	NA	77732324	77756804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_77732418_77732744_77732835_77732973_77733094_77733282_77733395_77733929_77734058_77734342_77734498_77736221_77736346_77736433_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516
ENSMUSG00000000686.12_0	chr11	+	3057	2	FSM	ENSMUSG00000000686.12	ENSMUST00000094004.5	2662	2	-22	-373	-22	373	multi-exon	FALSE	canonical	2	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATCCCACTGAGCCTTC	NA	False	NA	NA	False	NA	NA	NA	77405924	77411244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77406879_77409141
ENSMUSG00000000693.11_2	chr6	+	2850	14	FSM	ENSMUSG00000000693.11	ENSMUST00000000707.9	4098	14	8	1240	8	655	multi-exon	FALSE	canonical	2	3	junction_1	2.5903781908435	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCCAGGACTGATGCAGC	2237	False	NA	NA	False	TATAAA	-13	NA	83011161	83028303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83011271_83012435_83012779_83014409_83014574_83015375_83015591_83024968_83025189_83025558_83025740_83025849_83026005_83026164_83026333_83026464_83026628_83026754_83026999_83027096_83027213_83027288_83027426_83027538_83027651_83027780
ENSMUSG00000000708.15_57	chr17	+	1501	1	ISM	ENSMUSG00000000708.15	ENSMUST00000000724.15	4653	18	104248	1	11824	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGTTATGTTTTA	NA	False	NA	18	True	AATATA	-44	NA	53978246	53979747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_53978200_53979700
ENSMUSG00000000708.15_6	chr17	+	4328	18	FSM	ENSMUSG00000000708.15	ENSMUST00000000724.15	4653	18	323	2	323	-2	multi-exon	FALSE	canonical	3	180	junction_6	30.0116471047111	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGTGTTATGTTTT	NA	False	NA	17	True	AATATA	-43	NA	53874321	53979746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_53874607_53917891_53918019_53931379_53931526_53936351_53936445_53939564_53939747_53945379_53945572_53948220_53948328_53951641_53951765_53955774_53955912_53960049_53960259_53961466_53961594_53966345_53966457_53967056_53967201_53970562_53970678_53972433_53972471_53972680_53972745_53972850_53972936_53977702
ENSMUSG00000000711.4_0	chr10	-	3170	6	FSM	ENSMUSG00000000711.4	ENSMUST00000000727.4	3180	6	-8	18	-8	-18	multi-exon	FALSE	canonical	3	160	junction_5	17.0528589978338	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGGAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	128532141	128513061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128515515_128517254_128517349_128518692_128518816_128519063_128519216_128522616_128522878_128532054
ENSMUSG00000000711.4_2	chr10	-	1433	1	ISM	ENSMUSG00000000711.4	ENSMUST00000000727.4	3180	6	17639	18	17632	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGGAAAAAAGAAAGT	7978	False	NA	NA	False	NA	NA	NA	128514494	128513061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128513100_128514500
ENSMUSG00000000711.4_8	chr10	-	3084	5	ISM	ENSMUSG00000000711.4	ENSMUST00000000727.4	3180	6	9255	18	9248	-18	3prime_fragment	FALSE	canonical	3	169	junction_1	14.5688022843335	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGGAAAAAAGAAAGT	2992	False	NA	NA	False	NA	NA	NA	128522878	128513061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128515515_128517254_128517349_128518692_128518816_128519063_128519216_128522616
ENSMUSG00000000730.14_0	chr10	+	1655	13	FSM	ENSMUSG00000000730.14	ENSMUST00000000746.12	1676	13	14	7	14	0	multi-exon	FALSE	canonical	2	8	junction_8	3.51484945149386	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTAGTGTTCTGGTGTG	5605	False	NA	22	True	AATATA	-14	NA	77885689	77899449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77885746_77885849_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
ENSMUSG00000000730.14_1	chr10	+	1637	12	FSM	ENSMUSG00000000730.14	ENSMUST00000151242.8	1657	12	19	1	19	0	multi-exon	FALSE	canonical	2	8	junction_7	3.67029622512479	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTAGTGTTCTGGTGTG	5727	False	NA	22	True	AATATA	-14	NA	77885811	77899449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
ENSMUSG00000000731.16_10	chr10	-	1001	5	ISM	ENSMUSG00000000731.16	ENSMUST00000140636.8	1615	12	5273	6	-47	-6	3prime_fragment	FALSE	canonical	0	0	junction_3	7.79021822544144	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACTTTGAGGTACACCT	NA	False	NA	-15	True	ATTAAA	-10	NA	77874141	77865870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_77866159_77867654_77867724_77870214_77870324_77872518_77872619_77873706
ENSMUSG00000000731.16_6	chr10	-	1981	6	ISM	ENSMUSG00000000731.16	ENSMUST00000131028.8	2966	14	5580	5	228	3	3prime_fragment	FALSE	canonical	2	9	junction_4	3.86781592116274	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTACACCTGGTGGATGT	NA	False	NA	-6	True	ATTAAA	-19	NA	77873864	77865861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_77866159_77867654_77867724_77870214_77870324_77870419_77871668_77872518_77872619_77873706
ENSMUSG00000000731.16_8	chr10	-	3090	5	NIC	ENSMUSG00000000731.16	novel	1712	13	NA	NA	-34	-3	intron_retention	FALSE	canonical	2	13	junction_4	2.58602010819715	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGAGGTACACCTGGT	NA	False	NA	-12	True	ATTAAA	-13	NA	77874128	77865867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_77866159_77867654_77867724_77870214_77870324_77870419_77872619_77873706
ENSMUSG00000000732.10_1	chr10	+	2785	7	FSM	ENSMUSG00000000732.10	ENSMUST00000105393.3	2814	7	29	0	-29	0	multi-exon	FALSE	canonical	3	8	junction_2	4.83045891539648	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGTGTCTGGTGGCTT	NA	False	NA	5	True	AATAAA	-17	NA	77905164	77915359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77905370_77906994_77907114_77907571_77907926_77909540_77909835_77911038_77911189_77912977_77913008_77913726
ENSMUSG00000000732.10_4	chr10	+	3496	6	ISM	ENSMUSG00000000732.10	ENSMUST00000105393.3	2814	7	35	2	-23	-2	intron_retention	FALSE	canonical	3	8	junction_2	4.4	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTTGTGTCTGGTGGC	NA	False	NA	3	True	AATAAA	-15	NA	77905170	77915357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_77905370_77906994_77907114_77907571_77907926_77909540_77909835_77911038_77911189_77912977
ENSMUSG00000000732.10_6	chr10	+	1500	1	ISM	ENSMUSG00000000732.10	ENSMUST00000105393.3	2814	7	8724	0	4687	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGTGTCTGGTGGCTT	NA	False	NA	5	True	AATAAA	-17	NA	77913859	77915359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_77913900_77915400
ENSMUSG00000000738.19_0	chr8	+	2554	17	FSM	ENSMUSG00000000738.19	ENSMUST00000149248.9	2896	17	331	11	2	-2	multi-exon	FALSE	canonical	3	204	junction_8	27.3615120881504	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAATTTGAGCTCTCCAT	NA	False	NA	9	True	AGTAAA	-9	NA	123792248	123824488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123792449_123793211_123793315_123797114_123797205_123800487_123800730_123803589_123803730_123804556_123804660_123806152_123806279_123806707_123806871_123807375_123807550_123814066_123814192_123815683_123815787_123816862_123816974_123818373_123818490_123820329_123820487_123821212_123821380_123821896_123821975_123824132
ENSMUSG00000000738.19_7	chr8	+	2549	17	NNC	ENSMUSG00000000738.19	novel	2896	17	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	61.7469318569757	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAATTTGAGCTCTCCAT	NA	False	NA	9	True	AGTAAA	-9	NA	123792250	123824488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_123792449_123793211_123793315_123797114_123797205_123800490_123800730_123803589_123803730_123804556_123804660_123806152_123806279_123806707_123806871_123807375_123807550_123814066_123814192_123815683_123815787_123816862_123816974_123818373_123818490_123820329_123820487_123821212_123821380_123821896_123821975_123824132
ENSMUSG00000000739.15_0	chr8	-	1020	6	FSM	ENSMUSG00000000739.15	ENSMUST00000122819.8	1053	6	34	-1	-8	1	multi-exon	FALSE	canonical	2	9	junction_2	38.0189426470542	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGACTCTGTCCCAGGC	9777	False	NA	-6	True	AATAAA	-17	NA	123884975	123869586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123869886_123872080_123872262_123875048_123875176_123875957_123876173_123884177_123884327_123884926
ENSMUSG00000000739.15_1	chr8	-	1150	7	FSM	ENSMUSG00000000739.15	ENSMUST00000000755.15	3805	7	-1	2656	-1	1	multi-exon	FALSE	canonical	3	57	junction_6	18.7764628073435	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGACTCTGTCCCAGGC	9742	False	NA	-6	True	AATAAA	-17	NA	123885010	123869586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884327_123884926
ENSMUSG00000000739.15_2	chr8	-	1171	7	NIC	ENSMUSG00000000739.15	novel	3805	7	NA	NA	-3	1	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	23.3380947522857	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGACTCTGTCCCAGGC	9736	False	NA	-6	True	AATAAA	-17	NA	123885016	123869586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884342_123884926
ENSMUSG00000000739.15_3	chr8	-	1067	6	ISM	ENSMUSG00000000739.15	ENSMUST00000000755.15	3805	7	682	2656	640	1	3prime_fragment	FALSE	canonical	3	83	junction_1	11.1103555298649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGACTCTGTCCCAGGC	9385	False	NA	-6	True	AATAAA	-17	NA	123884327	123869586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177
ENSMUSG00000000739.15_5	chr8	-	3154	2	FSM	ENSMUSG00000000739.15	ENSMUST00000126951.2	674	2	-6	-2474	-6	2474	multi-exon	FALSE	canonical	3	57	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGCAAAAAAAAAAAAAAAA	9733	False	NA	NA	False	AATACA	-19	NA	123885019	123881265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123884327_123884926
ENSMUSG00000000740.13_0	chr8	+	712	6	FSM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	64	4	64	-4	multi-exon	FALSE	canonical	3	17818	junction_5	2681.35350895774	6753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTGGGTTTCTTTGTC	NA	False	NA	13	True	AATAAA	-14	NA	123829152	123831979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
ENSMUSG00000000740.13_30	chr8	+	681	5	ISM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	301	5	0	-5	3prime_fragment	FALSE	canonical	3	17818	junction_4	2909.59597710747	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAAGCTGGGTTTCTTTGT	NA	False	NA	12	True	AATAAA	-13	NA	123829389	123831978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
ENSMUSG00000000743.10_0	chr8	-	2121	7	FSM	ENSMUSG00000000743.10	ENSMUST00000000759.9	2140	7	14	5	14	-5	multi-exon	FALSE	canonical	3	428	junction_1	74.3544439380279	779	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACGTCTCAGACTTTTT	9759	False	NA	-9	True	AATAAA	-11	NA	123939485	123931007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123936954_123936975_123939404
ENSMUSG00000000751.14_1	chr11	-	2867	17	FSM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	26	2184	-3	0	multi-exon	FALSE	canonical	3	1486	junction_1	165.245638652734	2744	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTCTTTGACTGTAAAG	NA	False	NA	-16	True	AATAAA	-21	NA	75239124	75191175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
ENSMUSG00000000753.16_0	chr11	-	1414	8	FSM	ENSMUSG00000000753.16	ENSMUST00000000769.14	1832	8	156	262	7	33	multi-exon	FALSE	canonical	3	25	junction_1	3.91751691451488	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTTTGCTTCTTCCTTCT	5534	False	NA	0	True	AATAAA	-14	NA	75313371	75300856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_75301220_75301659_75301871_75304732_75304876_75305746_75305951_75306400_75306557_75307055_75307255_75308734_75308823_75313321
ENSMUSG00000000753.16_1	chr11	-	1366	7	ISM	ENSMUSG00000000753.16	ENSMUST00000000769.14	1832	8	4703	262	-2	33	3prime_fragment	TRUE	canonical	3	25	junction_1	4.22952584681651	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTTTGCTTCTTCCTTCT	NA	False	NA	0	True	AATAAA	-14	NA	75308824	75300856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_75301220_75301659_75301871_75304732_75304876_75305746_75305951_75306400_75306557_75307055_75307255_75308734
ENSMUSG00000000759.15_0	chr8	-	3659	22	FSM	ENSMUSG00000000759.15	ENSMUST00000000776.15	3797	22	135	3	10	-1	multi-exon	TRUE	canonical	3	142	junction_11	12.9206544206397	309	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTTTCATGTGGTTTCT	NA	False	NA	-2	True	ATTAAA	-15	NA	12722113	12664279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
ENSMUSG00000000776.14_1	chr14	-	1977	8	FSM	ENSMUSG00000000776.14	ENSMUST00000180358.3	2032	8	93	-38	93	-1	multi-exon	FALSE	canonical	3	137	junction_3	15.9910689359494	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGTAAGTGGTTCTGC	1981	False	NA	-8	True	AATAAA	-16	NA	70680637	70676197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390
ENSMUSG00000000776.14_2	chr14	-	2026	9	FSM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	-11	1	-11	-1	multi-exon	FALSE	canonical	3	137	junction_3	16.2244992218558	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGTAAGTGGTTCTGC	1720	False	NA	-8	True	AATAAA	-16	NA	70680898	70676197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390_70680561_70680772
ENSMUSG00000000782.17_0	chr11	-	3027	11	FSM	ENSMUSG00000000782.17	ENSMUST00000109071.3	2059	11	-23	-945	-23	80	multi-exon	FALSE	canonical	3	39	junction_6	94.0672631684371	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGTCTGACTGAGTAGC	NA	False	NA	-9	True	AATAAA	-21	NA	52174181	52143117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_52144790_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52149679_52149773_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ENSMUSG00000000782.17_2	chr11	-	2990	11	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-5	81	at_least_one_novel_splicesite	FALSE	canonical	3	108	junction_1	46.9302674187991	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTCTGACTGAGTAGCT	NA	False	NA	-8	True	AATAAA	-22	NA	52174163	52143116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_52144790_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ENSMUSG00000000782.17_3	chr11	-	3016	11	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-9	80	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	63.363712012476	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGTCTGACTGAGTAGC	NA	False	NA	-9	True	AATAAA	-21	NA	52174167	52143117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_52144813_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ENSMUSG00000000782.17_4	chr11	-	2946	10	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-10	82	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	70.8071629214704	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTGACTGAGTAGCTG	NA	False	NA	-7	True	AATAAA	-23	NA	52174168	52143115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_52144813_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ENSMUSG00000000782.17_5	chr11	-	2936	10	NIC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-23	82	combination_of_known_splicesites	FALSE	canonical	3	51	junction_1	63.2314970740233	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTGACTGAGTAGCTG	NA	False	NA	-7	True	AATAAA	-23	NA	52174181	52143115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_52144790_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ENSMUSG00000000782.17_7	chr11	-	860	1	Genic_Genomic	ENSMUSG00000000782.17	novel	NA	NA	NA	NA	21729	82	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTGACTGAGTAGCTG	NA	False	NA	-7	True	AATAAA	-23	NA	52143975	52143115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_52143100_52144000
ENSMUSG00000000782.17_9	chr11	-	3086	12	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-9	80	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_7	83.2218979447156	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGTCTGACTGAGTAGC	NA	False	NA	-9	True	AATAAA	-21	NA	52174167	52143117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_52144790_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52149679_52149773_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
ENSMUSG00000000787.13_0	chrX	+	4570	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	52	70	0	-70	multi-exon	TRUE	canonical	3	179	junction_1	98.1322449554681	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCTCCTTTGTTGTTGT	NA	False	NA	11	True	AATAAA	-13	NA	13147260	13160221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_16	chrX	+	4261	14	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	5131	70	-1183	-70	3prime_fragment	FALSE	canonical	3	219	junction_1	83.7977277233556	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCTCCTTTGTTGTTGT	NA	False	NA	11	True	AATAAA	-13	NA	13152339	13160221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_20	chrX	+	4162	13	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	6288	70	-26	-70	3prime_fragment	FALSE	canonical	3	259	junction_2	77.4185952397025	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCTCCTTTGTTGTTGT	NA	False	NA	11	True	AATAAA	-13	NA	13153496	13160221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_23	chrX	+	4022	12	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	6512	66	198	-66	3prime_fragment	FALSE	canonical	3	259	junction_1	74.3651922486711	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTTGTTGTTGTCAAT	NA	False	NA	15	True	AATAAA	-17	NA	13153720	13160225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_25	chrX	+	3898	11	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	6853	70	38	-70	3prime_fragment	FALSE	canonical	3	307	junction_2	68.2175930387463	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCTCCTTTGTTGTTGT	NA	False	NA	11	True	AATAAA	-13	NA	13154061	13160221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_27	chrX	+	3680	9	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	7637	70	822	-70	3prime_fragment	FALSE	canonical	3	313	junction_1	65.2380257212004	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCTCCTTTGTTGTTGT	NA	False	NA	11	True	AATAAA	-13	NA	13154845	13160221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_30	chrX	+	3541	8	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	7886	68	1071	-68	3prime_fragment	FALSE	canonical	3	337	junction_2	59.7559663147044	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCCTTTGTTGTTGTCA	NA	False	NA	13	True	AATAAA	-15	NA	13155094	13160223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_31	chrX	+	3414	7	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	8465	70	1650	-70	3prime_fragment	FALSE	canonical	3	337	junction_1	56.7528756001746	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCTCCTTTGTTGTTGT	NA	False	NA	11	True	AATAAA	-13	NA	13155673	13160221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_33	chrX	+	3246	6	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	8934	66	2119	-66	3prime_fragment	FALSE	canonical	3	404	junction_1	44.1560867831378	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTTGTTGTTGTCAAT	NA	False	NA	15	True	AATAAA	-17	NA	13156142	13160225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_35	chrX	+	3110	5	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	9269	64	2454	-64	3prime_fragment	FALSE	canonical	3	406	junction_2	43.9566547862778	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGTTGTTGTCAATTG	NA	False	NA	17	True	AATAAA	-19	NA	13156477	13160227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_38	chrX	+	2948	4	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	9512	68	2697	-68	3prime_fragment	FALSE	canonical	3	406	junction_1	50.0399840127872	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCCTTTGTTGTTGTCA	NA	False	NA	13	True	AATAAA	-15	NA	13156720	13160223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_40	chrX	+	2774	3	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	10025	66	3210	-66	3prime_fragment	FALSE	canonical	3	424	junction_1	48	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTTGTTGTTGTCAAT	NA	False	NA	15	True	AATAAA	-17	NA	13157233	13160225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13157294_13157401_13157542_13157651
ENSMUSG00000000787.13_42	chrX	+	2668	2	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	10241	64	3426	-64	3prime_fragment	FALSE	canonical	3	520	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGTTGTTGTCAATTG	NA	False	NA	17	True	AATAAA	-19	NA	13157449	13160227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13157542_13157651
ENSMUSG00000000787.13_43	chrX	+	1907	1	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	11112	64	4297	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	294	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGTTGTTGTCAATTG	NA	False	NA	17	True	AATAAA	-19	NA	13158320	13160227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13158300_13160200
ENSMUSG00000000791.10_0	chr8	+	1412	5	ISM	ENSMUSG00000000791.10	ENSMUST00000000808.8	2873	16	8400	3	3633	-3	3prime_fragment	FALSE	canonical	1	1	junction_3	3.08220700148449	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGCCGTCGTGGTGC	NA	False	NA	NA	False	AATAAA	-27	NA	71269492	71274065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71269684_71269855_71269991_71271968_71272066_71272325_71272408_71273158
ENSMUSG00000000791.10_1	chr8	+	3425	4	ISM	ENSMUSG00000000791.10	ENSMUST00000212657.2	2741	15	8371	-2113	3639	2113	3prime_fragment	FALSE	canonical	2	4	junction_3	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACATCGGTGTTGTGCGGT	NA	False	NA	NA	False	AATAAA	-14	NA	71269498	71276181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71269684_71269855_71269991_71272325_71272408_71273158
ENSMUSG00000000791.10_2	chr8	+	1083	1	NIC	ENSMUSG00000000791.10	novel	2873	16	NA	NA	7122	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTGGCCGTCGTGGTG	215	False	NA	NA	False	AATAAA	-26	NA	71272981	71274064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_71273000_71274100
ENSMUSG00000000792.3_0	chr8	-	1490	4	ISM	ENSMUSG00000000792.3	ENSMUST00000000809.3	2928	15	4894	1	4894	-1	3prime_fragment	FALSE	canonical	0	0	junction_2	1.4142135623731	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTGGCCTGTGGCGTA	NA	False	NA	NA	False	NA	NA	NA	71340507	71335533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71336613_71337564_71337681_71338673_71338799_71340337
ENSMUSG00000000804.15_1	chr11	-	2395	3	ISM	ENSMUSG00000000804.15	ENSMUST00000000821.15	3362	15	40640	-1203	188	-2	3prime_fragment	FALSE	canonical	3	68	junction_2	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTTTCTCTTTGTGATC	953	False	NA	-16	True	AGTAAA	-20	NA	84879321	84875269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_84877410_84878094_84878188_84879159
ENSMUSG00000000804.15_13	chr11	-	6960	34	NIC	ENSMUSG00000000804.15	novel	7053	34	NA	NA	16	-49	combination_of_known_splicesites	FALSE	canonical	3	6	junction_18	13.9856281998075	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGTGGTTTTTCCTTGTA	7571	False	NA	-9	True	ATTAAA	-14	NA	85030778	84875316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_84877410_84878094_84878188_84879159_84879585_84883278_84883568_84885211_84885404_84896633_84896755_84897818_84897906_84900784_84900970_84908455_84908668_84910590_84910703_84912981_84913134_84913556_84913732_84916344_84916519_84917601_84917708_84917926_84918066_84919886_84919962_84921308_84921391_84922894_84923050_84927305_84927466_84930026_84930168_84930820_84930997_84933313_84933507_84935535_84935639_84941212_84941275_84942016_84942101_84944473_84944537_84944759_84944876_84946591_84946700_84949953_84950086_84968090_84968251_84971956_84972076_84974614_84974721_84994724_84994853_85030536
ENSMUSG00000000804.15_14	chr11	-	1650	1	ISM	ENSMUSG00000000804.15	ENSMUST00000108075.9	7053	34	153898	49	2543	-49	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGTGGTTTTTCCTTGTA	3308	False	NA	-9	True	ATTAAA	-14	NA	84876966	84875316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_84875300_84877000
ENSMUSG00000000804.15_15	chr11	-	4132	12	ISM	ENSMUSG00000000804.15	ENSMUST00000108075.9	7053	34	117185	1	6282	-1	3prime_fragment	FALSE	canonical	3	51	junction_11	7.12810755778642	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTTCTCTTTGTGATCC	2675	False	NA	-15	True	AGTAAA	-21	NA	84913679	84875268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_84877410_84878094_84878188_84879159_84879585_84883278_84883568_84885211_84885404_84896633_84896755_84897818_84897906_84900784_84900970_84908455_84908668_84910590_84910703_84912981_84913134_84913556
ENSMUSG00000000804.15_2	chr11	-	6963	34	FSM	ENSMUSG00000000804.15	ENSMUST00000108075.9	7053	34	86	4	16	-4	multi-exon	FALSE	canonical	3	28	junction_26	11.8228429036788	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCCTTTCTCTTTGTGA	7571	False	NA	-18	True	AGTAAA	-18	NA	85030778	84875271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_84877410_84878094_84878188_84879159_84879585_84883278_84883568_84885211_84885404_84896633_84896755_84897818_84897906_84900784_84900970_84908455_84908668_84910590_84910703_84912981_84913134_84913556_84913732_84916344_84916519_84917601_84917708_84917926_84918066_84919886_84919962_84921308_84921391_84922894_84923050_84927347_84927466_84930026_84930168_84930820_84930997_84933313_84933507_84935535_84935639_84941212_84941275_84942016_84942101_84944473_84944537_84944759_84944876_84946591_84946700_84949953_84950086_84968090_84968251_84971956_84972076_84974614_84974721_84994724_84994853_85030536
ENSMUSG00000000804.15_24	chr11	-	2851	2	FSM	ENSMUSG00000000804.15	ENSMUST00000174809.2	566	2	-23	-2262	16	-1194	multi-exon	FALSE	canonical	3	44	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCCAAAAAAAAAAAA	7571	False	NA	NA	False	NA	NA	NA	85030778	84992243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_84994853_85030536
ENSMUSG00000000804.15_35	chr11	-	2997	5	ISM	ENSMUSG00000000804.15	ENSMUST00000000821.15	3362	15	34654	-1157	-5798	-48	3prime_fragment	FALSE	canonical	3	58	junction_4	4.55521678957215	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTTTTTCCTTGTAC	NA	False	NA	-8	True	ATTAAA	-15	NA	84885307	84875315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_84877410_84878094_84878188_84879159_84879585_84883278_84883568_84885211
ENSMUSG00000000804.15_5	chr11	-	2763	4	ISM	ENSMUSG00000000804.15	ENSMUST00000000821.15	3362	15	36579	-1204	-3873	-1	3prime_fragment	FALSE	canonical	3	66	junction_3	1.63299316185545	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTTCTCTTTGTGATCC	NA	False	NA	-15	True	AGTAAA	-21	NA	84883382	84875268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_84877410_84878094_84878188_84879159_84879585_84883278
ENSMUSG00000000804.15_7	chr11	-	3439	8	ISM	ENSMUSG00000000804.15	ENSMUST00000000821.15	3362	15	19084	-1202	19084	-3	3prime_fragment	FALSE	canonical	3	58	junction_4	4.33307168231517	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCCTTTCTCTTTGTGAT	NA	False	NA	-17	True	AGTAAA	-19	NA	84900877	84875270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_84877410_84878094_84878188_84879159_84879585_84883278_84883568_84885211_84885404_84896633_84896755_84897818_84897906_84900784
ENSMUSG00000000811.15_1	chr6	+	2746	16	FSM	ENSMUSG00000000811.15	ENSMUST00000000828.14	2836	16	1	89	1	-89	multi-exon	FALSE	canonical	3	51	junction_10	10.7467824642231	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTTGTGTGATCTAATT	NA	False	NA	2	True	ATTAAA	-13	NA	89620970	89652422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_89621385_89627507_89627569_89628480_89628591_89631035_89631141_89631330_89631404_89633009_89633130_89638440_89638584_89640058_89640175_89641359_89641586_89642681_89642775_89646286_89646364_89646799_89646957_89649152_89649261_89649949_89650046_89651042_89651178_89651710
ENSMUSG00000000811.15_5	chr6	+	1781	10	ISM	ENSMUSG00000000811.15	ENSMUST00000000828.14	2836	16	17553	89	17553	-89	3prime_fragment	FALSE	canonical	3	51	junction_4	9.35447341326631	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTTGTGTGATCTAATT	NA	False	NA	2	True	ATTAAA	-13	NA	89638522	89652422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_89638584_89640058_89640175_89641359_89641586_89642681_89642775_89646286_89646364_89646799_89646957_89649152_89649261_89649949_89650046_89651042_89651178_89651710
ENSMUSG00000000823.17_0	chr2	-	4270	12	NIC	ENSMUSG00000000823.17	novel	5357	15	NA	NA	109	3	intron_retention	FALSE	canonical	2	4	junction_9	14.4936577751263	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGGCTGAGTTTGTG	9730	False	NA	2	True	AATAAA	-29	NA	181230971	181223892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773_181229873_181230006_181230100_181230188_181230314_181230417_181230595_181230698_181230771_181230871
ENSMUSG00000000823.17_1	chr2	-	5574	15	NIC	ENSMUSG00000000823.17	novel	5714	17	NA	NA	18	-4	intron_retention	FALSE	canonical	1	2	junction_5	15.361129050766	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGATTTTGTGTGGCT	7501	False	NA	-7	True	AATAAA	-20	NA	181234533	181223901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229773_181229873_181230006_181230100_181230188_181230314_181230447_181230595_181230698_181230771_181230871_181231081_181231165_181231975_181232262_181232406_181232652_181232779_181234206
ENSMUSG00000000823.17_13	chr2	-	5014	13	ISM	ENSMUSG00000000823.17	ENSMUST00000128553.8	5357	15	874	4	-759	-4	3prime_fragment	FALSE	canonical	3	20	junction_9	11.3440513045384	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGATTTTGTGTGGCT	9237	False	NA	-7	True	AATAAA	-20	NA	181231839	181223901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773_181229873_181230006_181230100_181230188_181230314_181230447_181230595_181230698_181230771_181230871_181231081_181231165
ENSMUSG00000000823.17_17	chr2	-	5796	16	NIC	ENSMUSG00000000823.17	novel	5714	17	NA	NA	-3	-4	intron_retention	FALSE	canonical	2	4	junction_9	14.2229860905976	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGATTTTGTGTGGCT	7480	False	NA	-7	True	AATAAA	-20	NA	181234554	181223901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773_181229873_181230006_181230100_181230188_181230314_181230417_181230595_181230698_181230771_181230871_181231081_181231165_181231975_181232262_181232406_181232652_181232779_181234206
ENSMUSG00000000823.17_2	chr2	-	2435	1	ISM	ENSMUSG00000000823.17	ENSMUST00000108789.9	5714	17	8261	5	1767	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGGATTTTGTGTGGCTG	9901	False	NA	-6	True	AATAAA	-21	NA	181226335	181223900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181223900_181226300
ENSMUSG00000000823.17_28	chr2	-	3618	7	ISM	ENSMUSG00000000823.17	ENSMUST00000128553.8	5357	15	2917	4	-357	-4	3prime_fragment	FALSE	canonical	3	32	junction_5	11.0516464334003	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGATTTTGTGTGGCT	7776	False	NA	-7	True	AATAAA	-20	NA	181229796	181223901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773
ENSMUSG00000000823.17_30	chr2	-	4057	11	ISM	ENSMUSG00000000823.17	ENSMUST00000128553.8	5357	15	1988	33	-192	-33	3prime_fragment	FALSE	canonical	3	20	junction_9	12.0515559161463	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAAATAAATGTTTATTGA	9976	False	NA	-36	True	ATTAAA	-9	NA	181230725	181223930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773_181229873_181230006_181230100_181230188_181230314_181230447_181230595_181230698
ENSMUSG00000000823.17_32	chr2	-	5625	17	NIC	ENSMUSG00000000823.17	novel	5714	17	NA	NA	48	-1	intron_retention	TRUE	canonical	3	14	junction_13	13.0574152783007	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGATTTTGTGTGGCTGAG	7531	False	NA	-4	True	AATAAA	-23	NA	181234503	181223898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773_181229873_181230006_181230100_181230188_181230314_181230447_181230595_181230698_181230771_181230871_181231081_181231165_181231753_181231845_181231975_181232262_181232406_181232652_181232779_181234206
ENSMUSG00000000823.17_43	chr2	-	5511	16	NIC	ENSMUSG00000000823.17	novel	5714	17	NA	NA	16	-4	intron_retention	FALSE	canonical	3	7	junction_14	14.7714439224998	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGATTTTGTGTGGCT	7499	False	NA	-7	True	AATAAA	-20	NA	181234535	181223901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773_181229873_181230006_181230100_181230188_181230314_181230447_181230595_181230698_181230771_181230871_181231081_181231165_181231753_181231845_181231975_181232652_181232779_181234206
ENSMUSG00000000823.17_5	chr2	-	4287	12	ISM	ENSMUSG00000000823.17	ENSMUST00000128553.8	5357	15	1686	4	53	-4	3prime_fragment	FALSE	canonical	3	20	junction_9	11.5601195338268	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGATTTTGTGTGGCT	9674	False	NA	-7	True	AATAAA	-20	NA	181231027	181223901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773_181229873_181230006_181230100_181230188_181230314_181230447_181230595_181230698_181230771_181230871
ENSMUSG00000000823.17_8	chr2	-	5717	16	NIC	ENSMUSG00000000823.17	novel	5714	17	NA	NA	46	-4	intron_retention	FALSE	canonical	3	14	junction_15	12.4357906418888	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGATTTTGTGTGGCT	7529	False	NA	-7	True	AATAAA	-20	NA	181234505	181223901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773_181229873_181230006_181230100_181230188_181230314_181230447_181230595_181230698_181230771_181230871_181231081_181231165_181231975_181232262_181232406_181232652_181232779_181234206
ENSMUSG00000000823.17_9	chr2	-	5604	15	NIC	ENSMUSG00000000823.17	novel	5714	17	NA	NA	16	-4	intron_retention	FALSE	canonical	3	7	junction_13	14.3647811948359	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGATTTTGTGTGGCT	7499	False	NA	-7	True	AATAAA	-20	NA	181234535	181223901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181226867_181227465_181227565_181228091_181228155_181228511_181228614_181228839_181229035_181229521_181229693_181229773_181229873_181230006_181230100_181230188_181230314_181230447_181230595_181230698_181230771_181230871_181231081_181231165_181231975_181232652_181232779_181234206
ENSMUSG00000000826.17_1	chr2	+	4181	7	NIC	ENSMUSG00000000826.17	novel	3728	6	NA	NA	7	631	combination_of_known_junctions	FALSE	canonical	3	29	junction_6	78.8044344493943	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACAGCTGTGGTTTCTTG	7078	False	NA	10	True	AATAAA	-11	NA	181162350	181194673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065_181191814_181191959
ENSMUSG00000000826.17_2	chr2	+	4327	6	FSM	ENSMUSG00000000826.17	ENSMUST00000116365.9	3728	6	32	-631	7	631	multi-exon	FALSE	canonical	3	78	junction_5	67.7642973843897	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACAGCTGTGGTTTCTTG	7078	False	NA	10	True	AATAAA	-11	NA	181162350	181194673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
ENSMUSG00000000826.17_3	chr2	+	4261	5	FSM	ENSMUSG00000000826.17	ENSMUST00000072334.12	6578	5	64	2253	-2	631	multi-exon	FALSE	canonical	3	111	junction_4	50.7413785780402	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACAGCTGTGGTTTCTTG	7069	False	NA	10	True	AATAAA	-11	NA	181162341	181194673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181191065
ENSMUSG00000000826.17_32	chr2	+	2597	1	ISM	ENSMUSG00000000826.17	ENSMUST00000072334.12	6578	5	29799	2253	958	631	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACAGCTGTGGTTTCTTG	4180	False	NA	10	True	AATAAA	-11	NA	181192076	181194673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_181192100_181194700
ENSMUSG00000000826.17_4	chr2	+	4317	6	FSM	ENSMUSG00000000826.17	ENSMUST00000108797.8	3664	6	-5	-648	-5	631	multi-exon	FALSE	canonical	3	55	junction_1	79.8884221899519	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACAGCTGTGGTTTCTTG	7066	False	NA	10	True	AATAAA	-11	NA	181162338	181194673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181191065
ENSMUSG00000000826.17_6	chr2	+	4387	7	NIC	ENSMUSG00000000826.17	novel	3664	6	NA	NA	0	631	intron_retention	FALSE	canonical	3	55	junction_1	77.7924589318699	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACAGCTGTGGTTTCTTG	7071	False	NA	10	True	AATAAA	-11	NA	181162343	181194673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
ENSMUSG00000000827.19_0	chr2	+	1397	6	FSM	ENSMUSG00000000827.19	ENSMUST00000108800.8	3475	6	14	2064	2	-358	multi-exon	FALSE	canonical	3	271	junction_3	391.498454658508	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGATACAATGTAGAATTT	NA	False	NA	24	True	AATAAA	-20	NA	181138993	181157691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181154831_181154881_181156872
ENSMUSG00000000827.19_1	chr2	+	1432	7	FSM	ENSMUSG00000000827.19	ENSMUST00000069712.9	1799	7	2	365	2	-365	multi-exon	FALSE	canonical	3	271	junction_3	303.991227943615	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGGTTATGATACAATGT	NA	False	NA	17	True	AATAAA	-13	NA	181138993	181157684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000827.19_2	chr2	+	1490	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	38	2075	4	-365	multi-exon	FALSE	canonical	3	669	junction_5	184.043805788132	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGGTTATGATACAATGT	NA	False	NA	17	True	AATAAA	-13	NA	181138995	181157684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000827.19_3	chr2	+	1517	9	FSM	ENSMUSG00000000827.19	ENSMUST00000108799.10	985	9	-28	-504	4	-365	multi-exon	FALSE	canonical	3	48	junction_5	401.298965080898	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGGTTATGATACAATGT	NA	False	NA	17	True	AATAAA	-13	NA	181138995	181157684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181152296_181152324_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000827.19_7	chr2	+	1456	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	20	1474	2	-359	multi-exon	FALSE	canonical	3	318	junction_5	284.174486695919	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATGATACAATGTAGAATT	NA	False	NA	23	True	AATAAA	-19	NA	181138993	181157690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
ENSMUSG00000000838.18_0	chrX	+	4244	17	NNC	ENSMUSG00000000838.18	novel	4409	17	NA	NA	22	-24	at_least_one_novel_splicesite	FALSE	canonical	3	169	junction_14	180.447880286802	230	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTGCACTTATGAAAAAGC	NA	False	NA	-4	True	ATTAAA	-2	NA	67722251	67761545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755872_67756020_67756846_67756930_67759170
ENSMUSG00000000838.18_1	chrX	+	4293	17	FSM	ENSMUSG00000000838.18	ENSMUST00000088546.12	4409	17	102	14	19	-14	multi-exon	FALSE	canonical	3	466	junction_14	131.607237049298	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAAGCAAAATACTAG	NA	False	NA	6	True	ATTAAA	-12	NA	67722248	67761555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759170
ENSMUSG00000000838.18_103	chrX	+	1939	1	ISM	ENSMUSG00000000838.18	ENSMUST00000088546.12	4409	17	37470	14	4160	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAAGCAAAATACTAG	NA	False	NA	6	True	ATTAAA	-12	NA	67759616	67761555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_67759600_67761600
ENSMUSG00000000838.18_11	chrX	+	4202	16	NNC	ENSMUSG00000000838.18	novel	4076	16	NA	NA	11	-14	at_least_one_novel_splicesite	FALSE	canonical	3	169	junction_13	205.444883119536	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAAGCAAAATACTAG	NA	False	NA	6	True	ATTAAA	-12	NA	67722240	67761555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755872_67756020_67756846_67756930_67759170
ENSMUSG00000000838.18_2	chrX	+	4216	17	FSM	ENSMUSG00000000838.18	ENSMUST00000114653.2	4058	17	-172	14	21	-14	multi-exon	FALSE	canonical	3	204	junction_14	173.862182759075	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAAGCAAAATACTAG	NA	False	NA	6	True	ATTAAA	-12	NA	67722250	67761555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755911_67756020_67756846_67756930_67759170
ENSMUSG00000000838.18_5	chrX	+	4085	16	NIC	ENSMUSG00000000838.18	novel	4058	17	NA	NA	39	-64	combination_of_known_junctions	FALSE	canonical	3	204	junction_13	199.338461472497	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGTTTATCTTATCTA	NA	False	NA	34	True	ATTAAA	-15	NA	67722268	67761505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755911_67756020_67756846_67756930_67759170
ENSMUSG00000000838.18_6	chrX	+	4238	16	FSM	ENSMUSG00000000838.18	ENSMUST00000114657.9	4076	16	-176	14	11	-14	multi-exon	FALSE	canonical	3	289	junction_11	161.476190195335	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAAGCAAAATACTAG	NA	False	NA	6	True	ATTAAA	-12	NA	67722240	67761555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759170
ENSMUSG00000000876.12_1	chr2	-	940	4	FSM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	22	1827	2	-1827	multi-exon	FALSE	canonical	3	158	junction_1	13.4246870437348	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGAGTCTGTGGCTTGATT	NA	False	NA	0	True	NA	NA	NA	154445606	154429504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_154430013_154434084_154434284_154438121_154438185_154445436
ENSMUSG00000000876.12_2	chr2	-	1793	5	NNC	ENSMUSG00000000876.12	novel	2789	4	NA	NA	9	-925	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.6671781976525	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAATCTTAATCATAT	NA	False	NA	-10	True	NA	NA	NA	154445599	154428602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_154429102_154429143_154430013_154434084_154434284_154438121_154438185_154445436
ENSMUSG00000000876.12_4	chr2	-	544	3	FSM	ENSMUSG00000000876.12	ENSMUST00000109703.3	560	3	2	14	2	-14	multi-exon	FALSE	canonical	0	0	junction_1	94.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTTAAGTCTAAGTTGCA	NA	False	NA	NA	False	AATAAA	-16	NA	154445606	154437179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_154437491_154438121_154438185_154445436
ENSMUSG00000000881.13_0	chrX	+	3948	14	FSM	ENSMUSG00000000881.13	ENSMUST00000113735.3	3692	14	-260	4	-260	-2	multi-exon	FALSE	canonical	3	21	junction_2	29.3332212656995	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAACAATGGCTCAGAGG	NA	False	NA	NA	False	AATAAA	-11	NA	99818086	99862010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_99818551_99819412_99819570_99819984_99820088_99840291_99840407_99850117_99850295_99850785_99850862_99851658_99851759_99855107_99855150_99856331_99856383_99856942_99857045_99857809_99857983_99858398_99858509_99858813_99858906_99859824
ENSMUSG00000000881.13_11	chrX	+	1263	1	ISM	ENSMUSG00000000881.13	ENSMUST00000000901.13	4885	19	49420	2	9142	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAACAATGGCTCAGAGG	NA	False	NA	NA	False	AATAAA	-11	NA	99860747	99862010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_99860700_99862000
ENSMUSG00000000881.13_3	chrX	+	3311	12	FSM	ENSMUSG00000000881.13	ENSMUST00000151020.8	3316	12	1	4	1	-2	multi-exon	FALSE	canonical	3	72	junction_1	11.5078126534158	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAACAATGGCTCAGAGG	700	False	NA	NA	False	AATAAA	-11	NA	99820891	99862010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_99820979_99840291_99840407_99850117_99850295_99850785_99850862_99851658_99851759_99855107_99855150_99856331_99856383_99856942_99857045_99857809_99857983_99858398_99858509_99858813_99858906_99859824
ENSMUSG00000000884.18_0	chr16	+	1393	8	FSM	ENSMUSG00000000884.18	ENSMUST00000231621.2	1485	8	88	4	17	-2	multi-exon	FALSE	canonical	3	66	junction_1	85.0267664938998	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGAAGCCTCAAGGTGG	NA	False	NA	11	True	AATAAA	-13	NA	18317550	18383286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18317602_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000884.18_12	chr16	+	1265	7	NIC	ENSMUSG00000000884.18	novel	3549	8	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	97.958182688102	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGCCTCAAGGTGGGAAC	NA	False	NA	15	True	AATAAA	-17	NA	18317641	18383290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_18317702_18317795_18317891_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000884.18_14	chr16	+	1400	8	NIC	ENSMUSG00000000884.18	novel	3592	9	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	36	junction_4	96.1913484166018	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGAAGCCTCAAGGTGG	NA	False	NA	11	True	AATAAA	-13	NA	18317639	18383286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362864_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000884.18_27	chr16	+	1343	7	ISM	ENSMUSG00000000884.18	ENSMUST00000231621.2	1485	8	332	4	105	-2	3prime_fragment	FALSE	canonical	3	265	junction_4	25.8419340521478	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGAAGCCTCAAGGTGG	NA	False	NA	11	True	AATAAA	-13	NA	18317794	18383286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000884.18_6	chr16	+	1404	8	FSM	ENSMUSG00000000884.18	ENSMUST00000090086.11	3549	8	2	2143	-1	-2	multi-exon	FALSE	canonical	3	212	junction_1	38.76564858485	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGAAGCCTCAAGGTGG	NA	False	NA	11	True	AATAAA	-13	NA	18317639	18383286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000901.18_0	chr10	-	2257	8	FSM	ENSMUSG00000000901.18	ENSMUST00000000924.13	2288	8	29	2	2	-1	multi-exon	FALSE	canonical	3	194	junction_3	14.5349683908307	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCGCCTGTCTGTTTTTCT	5085	False	NA	-5	True	ATTAAA	-15	NA	75768307	75759057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ENSMUSG00000000901.18_1	chr10	-	2981	7	NIC	ENSMUSG00000000901.18	novel	2288	8	NA	NA	11	-1	intron_retention	FALSE	canonical	3	194	junction_2	15.0489940601431	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCGCCTGTCTGTTTTTCT	5094	False	NA	-5	True	ATTAAA	-15	NA	75768298	75759057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_75759950_75761253_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ENSMUSG00000000901.18_12	chr10	-	1681	2	ISM	ENSMUSG00000000901.18	ENSMUST00000000924.13	2288	8	6294	2	-531	-1	3prime_fragment	FALSE	canonical	3	243	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCGCCTGTCTGTTTTTCT	2270	False	NA	-5	True	ATTAAA	-15	NA	75762042	75759057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75759950_75761253
ENSMUSG00000000901.18_3	chr10	-	1789	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	2	2	2	-1	multi-exon	FALSE	canonical	3	68	junction_1	51.1639521538358	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCGCCTGTCTGTTTTTCT	5085	False	NA	-5	True	ATTAAA	-15	NA	75768307	75759057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ENSMUSG00000000902.14_0	chr10	-	1596	9	FSM	ENSMUSG00000000902.14	ENSMUST00000121304.2	1622	9	28	-2	3	0	multi-exon	FALSE	canonical	3	799	junction_7	118.779206934547	836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTCTGTGCAGTAGCATA	6892	False	NA	-8	True	AATAAA	-14	NA	75757420	75732608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752633_75752746_75757136
ENSMUSG00000000902.14_1	chr10	-	1619	9	FSM	ENSMUSG00000000902.14	ENSMUST00000000925.10	1660	9	35	6	7	0	multi-exon	FALSE	canonical	3	255	junction_7	283.203990084886	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTCTGTGCAGTAGCATA	6896	False	NA	-8	True	AATAAA	-14	NA	75757416	75732608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752606_75752746_75757136
ENSMUSG00000000915.16_0	chr5	+	4343	32	FSM	ENSMUSG00000000915.16	ENSMUST00000000939.15	6735	32	33	2359	33	1511	multi-exon	TRUE	canonical	3	34	junction_6	6.64046185222248	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTGCCCTAGTGAGGGC	NA	False	NA	2	True	AATAAA	-16	NA	124111723	124141262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124111919_124127367_124127432_124127653_124127797_124127999_124128057_124129004_124129086_124129500_124129578_124129806_124129869_124132780_124132922_124133958_124134017_124134101_124134178_124134293_124134435_124134582_124134645_124134833_124134907_124134993_124135178_124135266_124135356_124135426_124135544_124135613_124135716_124135920_124136116_124136848_124136997_124137104_124137192_124137545_124137654_124137833_124137971_124138202_124138314_124138408_124138468_124138664_124138696_124138774_124138838_124139054_124139156_124139268_124139375_124139487_124139612_124139693_124139756_124139850_124140058_124140180
ENSMUSG00000000915.16_16	chr5	+	3019	19	ISM	ENSMUSG00000000915.16	ENSMUST00000000939.15	6735	32	23397	2359	2220	1511	3prime_fragment	FALSE	canonical	3	35	junction_3	7.00176344630584	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTGCCCTAGTGAGGGC	NA	False	NA	2	True	AATAAA	-16	NA	124135087	124141262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_124135178_124135266_124135356_124135426_124135544_124135613_124135716_124135920_124136116_124136848_124136997_124137104_124137192_124137545_124137654_124137833_124137971_124138202_124138314_124138408_124138468_124138664_124138696_124138774_124138838_124139054_124139156_124139268_124139375_124139487_124139612_124139693_124139756_124139850_124140058_124140180
ENSMUSG00000000915.16_19	chr5	+	2668	16	ISM	ENSMUSG00000000915.16	ENSMUST00000000939.15	6735	32	23978	2359	-1804	1511	3prime_fragment	FALSE	canonical	3	35	junction_2	6.58753030775233	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTGCCCTAGTGAGGGC	NA	False	NA	2	True	AATAAA	-16	NA	124135668	124141262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_124135716_124135920_124136116_124136848_124136997_124137104_124137192_124137545_124137654_124137833_124137971_124138202_124138314_124138408_124138468_124138664_124138696_124138774_124138838_124139054_124139156_124139268_124139375_124139487_124139612_124139693_124139756_124139850_124140058_124140180
ENSMUSG00000000916.16_0	chr5	+	1569	10	FSM	ENSMUSG00000000916.16	ENSMUST00000000940.15	2243	10	17	657	0	-2	multi-exon	FALSE	canonical	3	253	junction_9	22.1966519552993	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGACAGATCACAGTTTTA	NA	False	NA	16	True	AATAAA	-16	NA	135398823	135404995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
ENSMUSG00000000934.10_1	chr15	-	1887	14	FSM	ENSMUSG00000000934.10	ENSMUST00000000958.9	1903	14	16	0	16	0	multi-exon	FALSE	canonical	3	71	junction_8	11.6872458678823	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTGTCACTGTGAC	NA	False	NA	-7	True	AATAAA	-11	NA	75550633	75528883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75539455_75539670_75539815_75540474_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547867_75547981_75550501
ENSMUSG00000000934.10_8	chr15	-	3210	12	NIC	ENSMUSG00000000934.10	novel	1903	14	NA	NA	5	-2	intron_retention	FALSE	canonical	3	71	junction_6	11.5372196831182	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGGTGTTTGTCACTGTG	NA	False	NA	-9	True	AATAAA	-9	NA	75550644	75528885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75539815_75540474_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547867_75547981_75550501
ENSMUSG00000000938.12_0	chr6	-	2557	2	FSM	ENSMUSG00000000938.12	ENSMUST00000125581.2	2565	2	2	6	2	-4	multi-exon	FALSE	canonical	3	17	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAGCTTTTTAATTTCA	9665	False	NA	-19	True	AATAAA	-9	NA	52211917	52208182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52209761_52210938
ENSMUSG00000000938.12_1	chr6	-	1781	2	FSM	ENSMUSG00000000938.12	ENSMUST00000121043.2	1436	2	377	-722	318	-1	multi-exon	FALSE	canonical	3	11	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTTTTTAATTTCACCT	8723	False	NA	-16	True	AATAAA	-12	NA	52217457	52208179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52209761_52217257
ENSMUSG00000000938.12_2	chr6	-	1614	2	FSM	ENSMUSG00000000938.12	ENSMUST00000142611.2	1045	2	312	-881	312	-2	multi-exon	FALSE	canonical	3	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCTTTTTAATTTCACC	13	True	NA	-17	True	AATAAA	-11	NA	52217463	52208180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52209761_52217429
ENSMUSG00000000938.12_3	chr6	-	1049	1	ISM	ENSMUSG00000000938.12	ENSMUST00000125581.2	2565	2	2688	6	1073	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAGCTTTTTAATTTCA	9470	False	NA	-19	True	AATAAA	-9	NA	52209231	52208182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_52208200_52209200
ENSMUSG00000000957.12_0	chr14	+	3596	10	FSM	ENSMUSG00000000957.12	ENSMUST00000089688.6	2596	10	5	-1005	5	1005	multi-exon	FALSE	canonical	0	0	junction_5	5.50644964149505	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAAATCGTTCCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	54669073	54679727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_54669431_54673201_54673351_54673594_54673718_54674071_54674380_54675057_54675220_54676121_54676283_54676467_54676607_54676737_54676889_54677361_54677478_54677797
ENSMUSG00000000958.11_10	chr14	-	2446	11	NIC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_10	51.7787601242054	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCTGAGTGGCTTTATT	NA	False	NA	-6	True	AATAAA	-15	NA	54655289	54606900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54654944
ENSMUSG00000000958.11_26	chr14	-	1810	9	ISM	ENSMUSG00000000958.11	ENSMUST00000000984.9	2132	10	520	3	520	0	3prime_fragment	FALSE	canonical	3	127	junction_5	17.3349358233597	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGTCTGAGTGGCTTTAT	7823	False	NA	-7	True	AATAAA	-14	NA	54646397	54606901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959
ENSMUSG00000000958.11_36	chr14	-	2314	13	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-143	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	58.2501788266211	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGTCTGAGTGGCTTTAT	NA	False	NA	-7	True	AATAAA	-14	NA	54655380	54606901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650184_54650242_54651336_54651471_54654045_54654228_54655357
ENSMUSG00000000958.11_6	chr14	-	2126	11	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-145	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_9	44.7447203589429	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCTGAGTGGCTTTATT	NA	False	NA	-6	True	AATAAA	-15	NA	54655382	54606900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655357
ENSMUSG00000000958.11_60	chr14	-	3156	10	ISM	ENSMUSG00000000958.11	ENSMUST00000226753.2	2126	11	-146	2	-45	0	intron_retention	FALSE	canonical	3	45	junction_9	39.09279874325	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCTGAGTGGCTTTATT	NA	False	NA	-6	True	AATAAA	-15	NA	54655282	54606900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045
ENSMUSG00000000958.11_7	chr14	-	3350	12	NIC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-43	0	intron_retention	FALSE	canonical	3	13	junction_10	52.3909335415525	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCTGAGTGGCTTTATT	NA	False	NA	-6	True	AATAAA	-15	NA	54655280	54606900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54651336_54651471_54654045
ENSMUSG00000000959.8_0	chr14	+	1502	10	FSM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	0	1036	0	0	multi-exon	TRUE	canonical	3	499	junction_4	29.1475598792348	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCCCTGTCTTGTCTGGG	NA	False	NA	21	True	ATTAAA	-44	NA	54598297	54606094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
ENSMUSG00000000959.8_11	chr14	+	1614	9	ISM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	286	1042	82	-6	3prime_fragment	FALSE	canonical	3	499	junction_3	30.0333148353624	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGTAAACCCCTGTCTTG	NA	False	NA	15	True	ATTAAA	-38	NA	54598583	54606088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
ENSMUSG00000000976.14_1	chr11	+	3865	20	FSM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	16	1733	-2	0	multi-exon	TRUE	canonical	3	50	junction_5	6.60059596066985	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGAATTGTGTTTTCAAG	4033	False	NA	4	True	AATAAA	-23	NA	83644537	83672847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83644768_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
ENSMUSG00000000976.14_3	chr11	+	3980	20	FSM	ENSMUSG00000000976.14	ENSMUST00000125831.8	4067	20	87	0	87	0	multi-exon	FALSE	canonical	2	8	junction_1	14.4999761199536	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGAATTGTGTTTTCAAG	4122	False	NA	4	True	AATAAA	-23	NA	83644626	83672847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83644972_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
ENSMUSG00000000976.14_31	chr11	+	3281	6	ISM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	22010	3	1282	-3	3prime_fragment	FALSE	canonical	3	63	junction_4	4.35430821141545	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACCGTTGGTTTCTGGGTC	1926	False	NA	8	True	AATAAA	-17	NA	83666531	83674577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
ENSMUSG00000000976.14_32	chr11	+	2231	1	ISM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	27826	2	7098	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCGTTGGTTTCTGGGTCT	7742	False	NA	9	True	AATAAA	-18	NA	83672347	83674578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83672300_83674600
ENSMUSG00000001016.13_1	chr3	+	1597	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	19	411	9	5	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	1255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTTTTATTTTTCTTC	NA	False	NA	18	True	ATTAAA	-18	NA	90383472	90395275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
ENSMUSG00000001017.16_0	chr3	-	1983	6	NIC	ENSMUSG00000001017.16	novel	2012	6	NA	NA	2	0	combination_of_known_junctions	TRUE	canonical	3	677	junction_3	303.893007487833	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTAACCCAGGCTTTC	NA	False	NA	-10	True	NA	NA	NA	90416779	90406271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_90407415_90409422_90409561_90410402_90410587_90413414_90413569_90414851_90414934_90416497
ENSMUSG00000001017.16_2	chr3	-	1987	6	FSM	ENSMUSG00000001017.16	ENSMUST00000049937.13	2012	6	25	0	1	0	multi-exon	FALSE	canonical	3	892	junction_3	230.9202459725	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTAACCCAGGCTTTC	NA	False	NA	-10	True	NA	NA	NA	90416780	90406271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90413569_90414851_90414934_90416497
ENSMUSG00000001017.16_3	chr3	-	3270	5	FSM	ENSMUSG00000001017.16	ENSMUST00000001043.14	3257	5	-22	9	1	0	multi-exon	FALSE	canonical	3	892	junction_3	258.017804618208	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTAACCCAGGCTTTC	NA	False	NA	-10	True	NA	NA	NA	90416780	90406271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90414934_90416497
ENSMUSG00000001017.16_8	chr3	-	1042	1	ISM	ENSMUSG00000001017.16	ENSMUST00000107343.8	3118	4	9444	9	9016	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTAACCCAGGCTTTC	NA	False	NA	-10	True	NA	NA	NA	90407313	90406271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_90406300_90407300
ENSMUSG00000001017.16_9	chr3	-	3267	5	NIC	ENSMUSG00000001017.16	novel	2012	6	NA	NA	1	0	intron_retention	FALSE	canonical	3	677	junction_3	338.147157314682	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTAACCCAGGCTTTC	NA	False	NA	-10	True	NA	NA	NA	90416780	90406271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_90407415_90409422_90409561_90410402_90410587_90413414_90414934_90416497
ENSMUSG00000001018.16_0	chr3	-	1555	4	FSM	ENSMUSG00000001018.16	ENSMUST00000149884.2	1928	4	34	339	-6	0	multi-exon	FALSE	canonical	3	599	junction_3	50.1663898109747	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAAATTTATTTTAT	NA	False	NA	-29	True	AATAAA	-20	NA	90398306	90395679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90396901_90397460_90397580_90397854_90397902_90398138
ENSMUSG00000001018.16_1	chr3	-	2063	2	FSM	ENSMUSG00000001018.16	ENSMUST00000107352.2	1843	2	-567	347	-2	0	multi-exon	FALSE	canonical	3	714	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAAATTTATTTTAT	NA	False	NA	-29	True	AATAAA	-20	NA	90398302	90395679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90396901_90397460
ENSMUSG00000001018.16_2	chr3	-	1787	3	FSM	ENSMUSG00000001018.16	ENSMUST00000107351.2	958	3	-202	-627	-1	0	multi-exon	FALSE	canonical	3	694	junction_2	10	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAAATTTATTTTAT	NA	False	NA	-29	True	AATAAA	-20	NA	90398301	90395679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90396901_90397460_90397580_90397854
ENSMUSG00000001018.16_4	chr3	-	1553	4	FSM	ENSMUSG00000001018.16	ENSMUST00000184877.8	1575	4	22	0	-9	0	multi-exon	FALSE	canonical	3	45	junction_3	310.762860643861	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAAATTTATTTTAT	NA	False	NA	-29	True	AATAAA	-20	NA	90398309	90395679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90396901_90397460_90397580_90397854_90397902_90398143
ENSMUSG00000001025.9_0	chr3	+	431	3	FSM	ENSMUSG00000001025.9	ENSMUST00000001051.9	731	3	300	0	28	0	multi-exon	FALSE	canonical	3	31	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCATGTGTTCTGGCTTCC	5497	False	NA	22	True	AATAAA	-22	NA	90520488	90521721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90520534_90521049_90521212_90521497
ENSMUSG00000001034.18_0	chr11	-	2936	7	FSM	ENSMUSG00000001034.18	ENSMUST00000079080.13	3019	7	76	7	-32	-7	multi-exon	FALSE	canonical	3	175	junction_5	27.9861076647365	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGACTCTGCGTCATTT	NA	False	NA	-6	True	AATACA	-12	NA	61385046	61379644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472_61384781_61384905
ENSMUSG00000001034.18_1	chr11	-	3055	6	ISM	ENSMUSG00000001034.18	ENSMUST00000079080.13	3019	7	82	7	-26	-7	intron_retention	FALSE	canonical	3	175	junction_5	27.8107892732299	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGACTCTGCGTCATTT	NA	False	NA	-6	True	AATACA	-12	NA	61385040	61379644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472
ENSMUSG00000001034.18_24	chr11	-	3062	7	NIC	ENSMUSG00000001034.18	novel	3134	7	NA	NA	-35	-7	intron_retention	FALSE	canonical	3	42	junction_5	71.8410668690888	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGACTCTGCGTCATTT	NA	False	NA	-6	True	AATACA	-12	NA	61385049	61379644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384349_61384781_61384905
ENSMUSG00000001034.18_4	chr11	-	3072	7	NIC	ENSMUSG00000001034.18	novel	3069	7	NA	NA	-27	-7	intron_retention	FALSE	canonical	3	31	junction_5	75.7840499196382	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGACTCTGCGTCATTT	NA	False	NA	-6	True	AATACA	-12	NA	61385041	61379644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384331_61384781_61384905
ENSMUSG00000001034.18_6	chr11	-	2990	7	FSM	ENSMUSG00000001034.18	ENSMUST00000108714.2	3069	7	72	7	-36	-7	multi-exon	FALSE	canonical	3	31	junction_5	75.7840499196382	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGACTCTGCGTCATTT	NA	False	NA	-6	True	AATACA	-12	NA	61385050	61379644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384422_61384781_61384905
ENSMUSG00000001036.18_10	chr11	-	1563	1	ISM	ENSMUSG00000001036.18	ENSMUST00000108711.8	4287	10	60854	4	25498	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATGTGGGTTTTGGCTGT	NA	False	NA	-4	True	TATAAA	-21	NA	61409641	61408078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_61408100_61409600
ENSMUSG00000001036.18_13	chr11	-	4363	10	NIC	ENSMUSG00000001036.18	novel	4452	11	NA	NA	-4	-3	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	123.776780367017	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATGTGGGTTTTGGCTGT	NA	False	NA	-4	True	TATAAA	-21	NA	61470500	61408078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61434983_61435155_61436975_61437738_61470392
ENSMUSG00000001036.18_18	chr11	-	3652	8	ISM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	33203	7	60	-6	3prime_fragment	FALSE	canonical	3	259	junction_6	31.4726962976625	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATGATGTGGGTTTTGGC	NA	False	NA	-7	True	TATAAA	-18	NA	61437308	61408081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975
ENSMUSG00000001036.18_2	chr11	-	4192	9	FSM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	11	4	-4	-3	multi-exon	FALSE	canonical	3	259	junction_6	30.1330383466387	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATGTGGGTTTTGGCTGT	NA	False	NA	-4	True	TATAAA	-21	NA	61470500	61408078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61470392
ENSMUSG00000001036.18_4	chr11	-	4260	10	NIC	ENSMUSG00000001036.18	novel	4452	11	NA	NA	-2	-6	combination_of_known_junctions	FALSE	canonical	3	37	junction_8	118.026780806961	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATGATGTGGGTTTTGGC	NA	False	NA	-7	True	TATAAA	-18	NA	61470498	61408081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61456647_61456721_61470392
ENSMUSG00000001036.18_5	chr11	-	4225	10	FSM	ENSMUSG00000001036.18	ENSMUST00000001063.15	4243	10	11	7	-4	-6	multi-exon	FALSE	canonical	3	47	junction_6	113.072029921715	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATGATGTGGGTTTTGGC	NA	False	NA	-7	True	TATAAA	-18	NA	61470500	61408081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61436975_61437738_61470392
ENSMUSG00000001039.13_1	chr11	+	765	7	FSM	ENSMUSG00000001039.13	ENSMUST00000102657.10	817	7	46	6	-13	-6	multi-exon	FALSE	canonical	3	315	junction_4	19.5739339144917	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGTTCTGGGGCCTTCAT	NA	False	NA	17	True	AATAAA	-17	NA	61396015	61403751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_61396098_61397169_61397239_61398453_61398566_61399897_61399995_61400295_61400359_61403197_61403266_61403477
ENSMUSG00000001052.16_0	chr3	-	4638	24	FSM	ENSMUSG00000001052.16	ENSMUST00000001079.15	5128	24	63	427	63	257	multi-exon	FALSE	canonical	3	129	junction_20	16.4228159792433	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTGGTTTGGTGGTTTG	NA	False	NA	-7	True	ATTAAA	-14	NA	129854493	129776834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_129777656_129777815_129777920_129781335_129781429_129782544_129782650_129783297_129783436_129783943_129784120_129784979_129785091_129786623_129786798_129787378_129787538_129787917_129788042_129789562_129789770_129789989_129790046_129790329_129790449_129793160_129793274_129795953_129796064_129796588_129796716_129798642_129798746_129801059_129801245_129803310_129803544_129805440_129805522_129814186_129814292_129827479_129827624_129834322_129835097_129854217
ENSMUSG00000001052.16_9	chr3	-	4533	23	NIC	ENSMUSG00000001052.16	novel	5128	24	NA	NA	63	257	combination_of_known_junctions	FALSE	canonical	3	42	junction_20	30.141162376748	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTGGTTTGGTGGTTTG	NA	False	NA	-7	True	ATTAAA	-14	NA	129854493	129776834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_129777656_129777815_129777920_129781335_129781429_129782544_129782650_129783297_129783436_129783943_129784120_129784979_129785091_129786623_129786798_129787378_129787538_129787917_129788042_129789562_129789770_129789989_129790046_129790329_129790449_129793160_129793274_129795953_129796064_129796588_129796716_129798642_129798746_129801059_129801245_129803310_129803544_129805440_129805522_129827479_129827624_129834322_129835097_129854217
ENSMUSG00000001053.16_0	chr11	-	2368	5	FSM	ENSMUSG00000001053.16	ENSMUST00000001080.16	2367	5	-28	27	-28	-27	multi-exon	FALSE	canonical	3	337	junction_4	13.2382022948737	615	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCAGTCTCTGGTCTTAT	NA	False	NA	-27	True	AATATA	-5	NA	51541697	51533916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51534976_51535101_51535357_51535999_51536513_51536753_51537102_51541504
ENSMUSG00000001054.10_1	chr11	-	1817	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	129	0	-14	0	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	346	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATGATTGCATGGTCTT	NA	False	NA	-9	True	AATATA	-19	NA	51526594	51514499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
ENSMUSG00000001056.4_1	chr11	+	725	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	38	279	2	6	multi-exon	FALSE	canonical	3	5273	junction_1	70.8723421998235	1515	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCAAGTGTGTGGGTGTTC	NA	False	NA	22	True	AGTAAA	-17	NA	51510599	51514262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
ENSMUSG00000001062.19_1	chr8	-	2769	15	FSM	ENSMUSG00000001062.19	ENSMUST00000122363.8	2952	15	179	4	-6	-1	multi-exon	FALSE	canonical	1	6	junction_9	6.2274081482506	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGTCCATGTGACTTGTT	2228	False	NA	NA	False	AATAAA	-14	NA	123980908	123969098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123969929_123970426_123970532_123971852_123971950_123972245_123972452_123972682_123972813_123973463_123973949_123974452_123974539_123974705_123974794_123974892_123974946_123975352_123975416_123975500_123975613_123977416_123977580_123977665_123977759_123979343_123979420_123980726
ENSMUSG00000001062.19_20	chr8	-	1710	6	ISM	ENSMUSG00000001062.19	ENSMUST00000155869.8	2728	15	7041	4	-138	-3	3prime_fragment	FALSE	canonical	3	11	junction_3	6.79411510058521	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGAAGTCCATGTGACTTG	9329	False	NA	NA	False	AATAAA	-12	NA	123973807	123969100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123969929_123970426_123970532_123971852_123971950_123972245_123972452_123972682_123972813_123973463
ENSMUSG00000001062.19_3	chr8	-	2767	15	FSM	ENSMUSG00000001062.19	ENSMUST00000118279.2	2696	15	-70	-1	1	0	multi-exon	FALSE	canonical	1	1	junction_2	7.59195331268843	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCATGTGACTTGTTCG	2235	False	NA	NA	False	AATAAA	-16	NA	123980901	123969096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123969929_123970426_123970535_123971852_123971950_123972245_123972452_123972682_123972813_123973463_123973949_123974452_123974539_123974705_123974794_123974892_123974946_123975352_123975416_123975500_123975613_123977416_123977580_123977665_123977759_123979343_123979420_123980726
ENSMUSG00000001062.19_8	chr8	-	2288	12	ISM	ENSMUSG00000001062.19	ENSMUST00000122363.8	2952	15	3636	6	359	-3	3prime_fragment	FALSE	canonical	1	6	junction_9	6.6915513525738	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGAAGTCCATGTGACTTG	5685	False	NA	NA	False	AATAAA	-12	NA	123977451	123969100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123969929_123970426_123970532_123971852_123971950_123972245_123972452_123972682_123972813_123973463_123973949_123974452_123974539_123974705_123974794_123974892_123974946_123975352_123975416_123975500_123975613_123977416
ENSMUSG00000001065.16_1	chr8	+	3986	11	FSM	ENSMUSG00000001065.16	ENSMUST00000001092.15	4071	11	73	12	-3	-10	multi-exon	FALSE	canonical	3	13	junction_5	4.69148164229596	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGTTTGCTGCCCAGA	1707	False	NA	9	True	ATTAAA	-38	NA	123981006	123996472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123981663_123982445_123982750_123983022_123983070_123983157_123983605_123985049_123985129_123986169_123986254_123991554_123991666_123991733_123991810_123992052_123992171_123994338_123994439_123994508
ENSMUSG00000001065.16_17	chr8	+	839	3	ISM	ENSMUSG00000001065.16	ENSMUST00000147312.2	676	5	5878	-497	517	292	3prime_fragment	FALSE	canonical	3	15	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTGGTGCGCTGAGATG	9049	False	NA	NA	False	AATAAA	-16	NA	123992076	123995153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123992171_123994338_123994439_123994508
ENSMUSG00000001065.16_18	chr8	+	2362	2	ISM	ENSMUSG00000001065.16	ENSMUST00000147312.2	676	5	7835	-1809	2474	-17	3prime_fragment	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCCATAGAAGTTTGCT	NA	False	NA	2	True	ATTAAA	-31	NA	123994033	123996465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123994439_123994508
ENSMUSG00000001065.16_2	chr8	+	2759	10	NIC	ENSMUSG00000001065.16	novel	4071	11	NA	NA	-34	285	intron_retention	FALSE	canonical	3	13	junction_5	4.66137265853401	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTGCCGGCTGGTGCGC	1676	False	NA	NA	False	AATAAA	-9	NA	123980975	123995146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_123981663_123982445_123982750_123983022_123983070_123983157_123983605_123985049_123985129_123986169_123986254_123991554_123991810_123992052_123992171_123994338_123994439_123994508
ENSMUSG00000001065.16_22	chr8	+	2612	11	NIC	ENSMUSG00000001065.16	novel	4071	11	NA	NA	1	273	combination_of_known_junctions	FALSE	canonical	3	9	junction_5	5.36749476012786	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATTATTTACAAAGGTGC	1711	False	NA	NA	False	NA	NA	NA	123981010	123995134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_123981663_123982445_123982750_123983022_123983070_123983157_123983605_123985049_123985097_123986169_123986254_123991554_123991666_123991733_123991810_123992052_123992171_123994338_123994439_123994508
ENSMUSG00000001065.16_29	chr8	+	903	1	ISM	ENSMUSG00000001065.16	ENSMUST00000001092.15	4071	11	14636	12	4010	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGTTTGCTGCCCAGA	NA	False	NA	9	True	ATTAAA	-38	NA	123995569	123996472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123995600_123996500
ENSMUSG00000001065.16_6	chr8	+	4019	10	NIC	ENSMUSG00000001065.16	novel	4111	10	NA	NA	0	-10	intron_retention	FALSE	canonical	3	9	junction_5	5.45237517617124	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGTTTGCTGCCCAGA	1710	False	NA	9	True	ATTAAA	-38	NA	123981009	123996472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_123981663_123982445_123982750_123983022_123983070_123983157_123983605_123985049_123985097_123986169_123986254_123991554_123991810_123992052_123992171_123994338_123994439_123994508
ENSMUSG00000001065.16_8	chr8	+	4048	10	ISM	ENSMUSG00000001065.16	ENSMUST00000001092.15	4071	11	81	12	5	-10	intron_retention	FALSE	canonical	3	13	junction_5	4.93913572686508	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGTTTGCTGCCCAGA	1715	False	NA	9	True	ATTAAA	-38	NA	123981014	123996472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123981663_123982445_123982750_123983022_123983070_123983157_123983605_123985049_123985129_123986169_123986254_123991554_123991666_123991733_123991810_123992052_123992171_123994338
ENSMUSG00000001076.8_0	chr15	-	2084	2	FSM	ENSMUSG00000001076.8	ENSMUST00000064462.5	1474	2	-610	0	-610	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTGCCTACCTTGG	6299	False	NA	NA	False	AATAAA	-17	NA	98986308	98981966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98982815_98985072
ENSMUSG00000001082.13_0	chr5	-	1453	11	ISM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	680	0	10	0	3prime_fragment	FALSE	canonical	3	347	junction_7	33.037705731482	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCCTTTCCGTCTTACT	NA	False	NA	-7	True	AATAAA	-17	NA	34793856	34790992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753
ENSMUSG00000001082.13_1	chr5	-	1845	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	60	1	-7	-1	multi-exon	FALSE	canonical	3	69	junction_12	91.0092715057098	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGCCTTTCCGTCTTAC	NA	False	NA	-8	True	AATAAA	-16	NA	34794476	34790993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794270
ENSMUSG00000001082.13_3	chr5	-	1845	13	FSM	ENSMUSG00000001082.13	ENSMUST00000001109.11	1907	13	54	8	5	-1	multi-exon	FALSE	canonical	3	174	junction_12	65.1670929227321	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGCCTTTCCGTCTTAC	NA	False	NA	-8	True	AATAAA	-16	NA	34794479	34790993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
ENSMUSG00000001082.13_42	chr5	-	1717	13	NIC	ENSMUSG00000001082.13	novel	1906	13	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_12	101.567164422804	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCCTTTCCGTCTTACT	NA	False	NA	-7	True	AATAAA	-17	NA	34794519	34790992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794442
ENSMUSG00000001082.13_5	chr5	-	1624	12	ISM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	422	0	37	0	3prime_fragment	FALSE	canonical	3	315	junction_11	36.4653123977358	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCCTTTCCGTCTTACT	NA	False	NA	-7	True	AATAAA	-17	NA	34794114	34790992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937
ENSMUSG00000001082.13_9	chr5	-	1719	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114331.10	1754	13	32	3	9	0	multi-exon	TRUE	canonical	3	36	junction_12	99.4937183946806	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCCTTTCCGTCTTACT	NA	False	NA	-7	True	AATAAA	-17	NA	34794524	34790992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794442
ENSMUSG00000001089.15_13	chr4	+	5217	2	FSM	ENSMUSG00000001089.15	ENSMUST00000001116.5	7246	2	2026	3	2026	0	multi-exon	FALSE	canonical	3	144	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCCTTTGAGTCAGTGA	NA	False	NA	11	True	AATAAA	-17	NA	136269690	136276626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_136270830_136272548
ENSMUSG00000001089.15_15	chr4	+	2776	1	ISM	ENSMUSG00000001089.15	ENSMUST00000170102.8	7526	5	76779	0	1275	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCCTTTGAGTCAGTGA	2829	False	NA	11	True	AATAAA	-17	NA	136273850	136276626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_136273800_136276600
ENSMUSG00000001089.15_2	chr4	+	7423	4	FSM	ENSMUSG00000001089.15	ENSMUST00000105849.9	7438	4	9	6	9	-2	multi-exon	FALSE	canonical	3	86	junction_2	34.7658836600865	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCTCCTTTGAGTCAGT	4166	False	NA	9	True	AATAAA	-15	NA	136197080	136276624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_136197162_136248651_136248755_136267666_136270830_136272548
ENSMUSG00000001089.15_3	chr4	+	7515	5	FSM	ENSMUSG00000001089.15	ENSMUST00000170102.8	7526	5	9	2	9	-2	multi-exon	FALSE	canonical	3	55	junction_3	50.5488624995657	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCTCCTTTGAGTCAGT	4166	False	NA	9	True	AATAAA	-15	NA	136197080	136276624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_136197162_136248651_136248755_136266435_136266528_136267666_136270830_136272548
ENSMUSG00000001095.6_0	chr11	-	1136	5	NIC	ENSMUSG00000001095.6	novel	2412	12	NA	NA	21280	-216	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	6.04152298679729	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCGGGTGTGTTTCCCGG	9744	False	NA	NA	False	ATTAAA	-15	NA	78291763	78288128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78288682_78289116_78289255_78289857_78290020_78291301_78291391_78291569
ENSMUSG00000001095.6_2	chr11	-	2832	12	FSM	ENSMUSG00000001095.6	ENSMUST00000001122.6	2412	12	30	-450	30	450	multi-exon	FALSE	canonical	1	1	junction_6	4.88884714899955	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAGGAGTACCAAT	NA	False	NA	NA	False	AATATA	-15	NA	78313013	78287462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78288682_78289116_78289255_78289857_78290020_78290909_78291032_78291301_78291391_78291569_78291789_78293897_78294021_78294139_78294312_78295203_78295404_78295496_78295634_78297635_78297765_78312891
ENSMUSG00000001098.16_0	chr5	-	3060	7	FSM	ENSMUSG00000001098.16	ENSMUST00000102581.11	3103	7	37	6	12	-6	multi-exon	FALSE	canonical	3	95	junction_4	16.3401346383682	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCACGCCGCCTTCTGGTC	NA	False	NA	-4	True	AATAAA	-18	NA	114518532	114501633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507089_114508119_114508290_114512956_114513171_114518486
ENSMUSG00000001098.16_2	chr5	-	3071	7	FSM	ENSMUSG00000001098.16	ENSMUST00000001125.6	1026	7	4	-2049	4	-6	multi-exon	FALSE	canonical	3	21	junction_4	38.0379927032025	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCACGCCGCCTTCTGGTC	NA	False	NA	-4	True	AATAAA	-18	NA	114518540	114501633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507092_114508119_114508290_114512956_114513171_114518486
ENSMUSG00000001098.16_3	chr5	-	1913	1	ISM	ENSMUSG00000001098.16	ENSMUST00000102581.11	3103	7	15023	6	3184	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCACGCCGCCTTCTGGTC	NA	False	NA	-4	True	AATAAA	-18	NA	114503546	114501633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_114501600_114503500
ENSMUSG00000001100.11_0	chr11	+	1975	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	75	4	75	-4	multi-exon	FALSE	canonical	3	1074	junction_9	50.3904752904753	1084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTTCTGAGTATTGTTC	1710	False	NA	14	True	ATTAAA	-11	NA	78403093	78413558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
ENSMUSG00000001100.11_14	chr11	+	2308	11	NIC	ENSMUSG00000001100.11	novel	2054	11	NA	NA	75	-4	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	336.48014800282	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTTCTGAGTATTGTTC	1710	False	NA	14	True	ATTAAA	-11	NA	78403093	78413558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_78403632_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
ENSMUSG00000001105.16_1	chr11	+	821	5	FSM	ENSMUSG00000001105.16	ENSMUST00000108275.2	582	5	-8	-231	7	-17	multi-exon	FALSE	canonical	3	256	junction_1	91.1125677390337	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTCTTTCTTCTATGG	NA	False	NA	7	True	AATAAA	-16	NA	78427260	78432546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ENSMUSG00000001105.16_14	chr11	+	146	1	ISM	ENSMUSG00000001105.16	ENSMUST00000128788.8	1141	6	5215	16	5103	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTCTTTCTTCTATGGT	NA	False	NA	8	True	AATAAA	-17	NA	78432401	78432547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78432400_78432500
ENSMUSG00000001105.16_2	chr11	+	1192	4	FSM	ENSMUSG00000001105.16	ENSMUST00000152016.2	909	4	-47	-236	-2	-17	multi-exon	FALSE	canonical	3	256	junction_1	104.521130240094	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTCTTTCTTCTATGG	NA	False	NA	7	True	AATAAA	-16	NA	78427251	78432546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720
ENSMUSG00000001105.16_3	chr11	+	1051	6	FSM	ENSMUSG00000001105.16	ENSMUST00000128788.8	1141	6	73	17	6	-17	multi-exon	FALSE	canonical	3	238	junction_1	100.921751867474	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTCTTTCTTCTATGG	NA	False	NA	7	True	AATAAA	-16	NA	78427259	78432546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ENSMUSG00000001105.16_5	chr11	+	1406	5	FSM	ENSMUSG00000001105.16	ENSMUST00000137120.8	1167	5	-9	-230	-7	-22	multi-exon	FALSE	canonical	3	238	junction_1	109.732344821388	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGGCTTGGTCTTTCTTC	NA	False	NA	2	True	AATAAA	-11	NA	78427261	78432541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720
ENSMUSG00000001105.16_6	chr11	+	2265	4	ISM	ENSMUSG00000001105.16	ENSMUST00000128788.8	1141	6	71	16	4	-16	intron_retention	FALSE	canonical	3	238	junction_1	112.395136312327	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTCTTTCTTCTATGGT	NA	False	NA	8	True	AATAAA	-17	NA	78427257	78432547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785
ENSMUSG00000001119.8_0	chr10	-	3949	34	NIC	ENSMUSG00000001119.8	novel	4100	35	NA	NA	141	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	12.3589563334811	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGTGCCTCTTTATCTAC	8583	False	NA	-1	True	AATAAA	-14	NA	76561861	76544626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_76546016_76546179_76546210_76546795_76546974_76547116_76547301_76547408_76547519_76548101_76548236_76549018_76549056_76549459_76549496_76549706_76549773_76549947_76550011_76550247_76550284_76550491_76550543_76550828_76550892_76551104_76551168_76552094_76552158_76552552_76552616_76552962_76552999_76553095_76553150_76553233_76553297_76553628_76553692_76553892_76553947_76554206_76554252_76554350_76554378_76554812_76554840_76554958_76555004_76555456_76555511_76556794_76556840_76556921_76556943_76557096_76557118_76557236_76557366_76557649_76557810_76559209_76559411_76560772_76560903_76561653
ENSMUSG00000001119.8_11	chr10	-	3058	25	NIC	ENSMUSG00000001119.8	novel	4100	35	NA	NA	-12	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	12.8078074062486	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGTGCCTCTTTATCTA	NA	False	NA	-2	True	AATAAA	-13	NA	76555082	76544627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_76546016_76546179_76546210_76546795_76546974_76547116_76547301_76547408_76547519_76548101_76548236_76549018_76549056_76549459_76549496_76549706_76549773_76549947_76550011_76550247_76550284_76550491_76550543_76550828_76550892_76551104_76551168_76552094_76552158_76552552_76552616_76552962_76552999_76553095_76553150_76553233_76553297_76553628_76553692_76553892_76553947_76554206_76554252_76554350_76554378_76554812_76554840_76554958
ENSMUSG00000001119.8_5	chr10	-	3513	32	NIC	ENSMUSG00000001119.8	novel	4100	35	NA	NA	2690	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	12.2720633139366	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGTGCCTCTTTATCTAC	NA	False	NA	-1	True	AATAAA	-14	NA	76559312	76544626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_76546016_76546179_76546210_76546795_76546974_76547116_76547301_76547408_76547519_76548101_76548236_76549018_76549056_76549459_76549496_76549706_76549773_76549947_76550011_76550247_76550284_76550491_76550543_76550828_76550892_76551104_76551168_76552094_76552158_76552552_76552616_76552962_76552999_76553095_76553150_76553233_76553297_76553628_76553692_76553892_76553947_76554206_76554252_76554350_76554378_76554812_76554840_76554958_76555004_76555456_76555511_76556794_76556840_76556921_76556943_76557096_76557118_76557236_76557366_76557649_76557810_76559209
ENSMUSG00000001120.16_1	chr10	-	2145	16	FSM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	-133	1	-34	0	multi-exon	FALSE	canonical	3	60	junction_5	18.4407760742931	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTCTGACTTCTCTCT	1103	False	NA	-4	True	AATAAA	-17	NA	76797755	76597691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
ENSMUSG00000001120.16_2	chr10	-	2128	16	NIC	ENSMUSG00000001120.16	novel	2544	19	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_5	23.7172229965202	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTCTGACTTCTCTCT	1117	False	NA	-4	True	AATAAA	-17	NA	76797741	76597691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606871_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
ENSMUSG00000001123.16_0	chr11	-	1457	10	FSM	ENSMUSG00000001123.16	ENSMUST00000108268.10	1520	10	56	7	34	-2	multi-exon	FALSE	canonical	3	15	junction_9	3.82970843102535	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACATGTGAGATGGCTG	NA	False	NA	-4	True	AATAAA	-22	NA	78875716	78853806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78862142_78862254_78863813_78864016_78867438_78867528_78875603
ENSMUSG00000001123.16_1	chr11	-	1538	11	FSM	ENSMUSG00000001123.16	ENSMUST00000108269.10	1586	11	46	2	46	-2	multi-exon	FALSE	canonical	2	4	junction_6	7.48398289682706	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACATGTGAGATGGCTG	NA	False	NA	-4	True	AATAAA	-22	NA	78875704	78853806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78860539_78860633_78862142_78862254_78863813_78864016_78867438_78867528_78875603
ENSMUSG00000001127.13_0	chrX	+	2351	16	NIC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-2	0	combination_of_known_junctions	FALSE	non_canonical	1	66	junction_12	96.2243674382372	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	1121	False	NA	23	True	NA	NA	NA	20664050	20726758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
ENSMUSG00000001127.13_15	chrX	+	1524	6	FSM	ENSMUSG00000001127.13	ENSMUST00000120356.8	1520	6	-3	-1	0	1	multi-exon	FALSE	canonical	3	219	junction_1	64.9935381403413	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTTTCTCCAACTATCTT	6305	False	NA	NA	False	AATAAA	-13	NA	20714813	20719129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
ENSMUSG00000001127.13_16	chrX	+	2326	16	FSM	ENSMUSG00000001127.13	ENSMUST00000001155.11	2358	16	32	0	0	0	multi-exon	FALSE	non_canonical	1	66	junction_12	87.7031356337959	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	6305	False	NA	23	True	NA	NA	NA	20714813	20726758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
ENSMUSG00000001127.13_3	chrX	+	1542	6	ISM	ENSMUSG00000001127.13	ENSMUST00000136451.8	2439	17	-2	7614	-2	-6	5prime_fragment	TRUE	canonical	3	74	junction_1	119.456100723236	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTACCCTTTCTCCAA	1121	False	NA	NA	False	AATAAA	-6	NA	20664050	20719122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
ENSMUSG00000001128.8_0	chrX	-	3116	7	NIC	ENSMUSG00000001128.8	novel	1636	9	NA	NA	50	-79	intron_retention	FALSE	canonical	3	58	junction_6	24.7773417998515	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTTCTAAGATTCTGTA	NA	False	NA	-6	True	AATAAA	-14	NA	20797744	20791771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_20791999_20793519_20793632_20793773_20794366_20794566_20794759_20794881_20795053_20795834_20797542_20797629
ENSMUSG00000001128.8_1	chrX	-	1509	9	FSM	ENSMUSG00000001128.8	ENSMUST00000001156.8	1636	9	48	79	48	-79	multi-exon	FALSE	canonical	3	58	junction_8	23.4837044564949	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTTCTAAGATTCTGTA	NA	False	NA	-6	True	AATAAA	-14	NA	20797746	20791771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_20791999_20793519_20793632_20793773_20793963_20794191_20794366_20794566_20794759_20794881_20795053_20795834_20796011_20797390_20797542_20797629
ENSMUSG00000001128.8_5	chrX	-	918	3	ISM	ENSMUSG00000001128.8	ENSMUST00000001156.8	1636	9	3442	79	-499	-79	intron_retention	FALSE	canonical	3	117	junction_2	8	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTTCTAAGATTCTGTA	NA	False	NA	-6	True	AATAAA	-14	NA	20794352	20791771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_20791999_20793519_20793632_20793773
ENSMUSG00000001128.8_6	chrX	-	2249	7	ISM	ENSMUSG00000001128.8	ENSMUST00000001156.8	1636	9	778	77	778	-77	3prime_fragment	FALSE	canonical	3	67	junction_3	22.7082951070015	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCTAAGATTCTGTAAT	NA	False	NA	-4	True	AATAAA	-16	NA	20797016	20791769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_20791999_20793519_20793632_20793773_20793963_20794191_20794366_20794566_20794759_20794881_20795053_20795834
ENSMUSG00000001128.8_9	chrX	-	1331	8	NIC	ENSMUSG00000001128.8	novel	1636	9	NA	NA	50	-81	combination_of_known_splicesites	FALSE	canonical	1	6	junction_3	38.4819066946681	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCTTTCTAAGATTCTG	NA	False	NA	-8	True	AATAAA	-12	NA	20797744	20791773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_20791999_20793519_20793632_20793773_20793963_20794566_20794759_20794881_20795053_20795834_20796011_20797390_20797542_20797629
ENSMUSG00000001131.12_0	chrX	+	804	6	FSM	ENSMUSG00000001131.12	ENSMUST00000115342.10	883	6	78	1	23	-1	multi-exon	FALSE	canonical	3	578	junction_1	90.9382207875215	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATATTTCTGTATAGTG	NA	False	NA	15	True	AATAAA	-16	NA	20736482	20740971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20736564_20737272_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
ENSMUSG00000001131.12_1	chrX	+	806	6	FSM	ENSMUSG00000001131.12	ENSMUST00000009530.5	833	6	22	5	22	-3	multi-exon	FALSE	canonical	3	257	junction_1	211.264384125673	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCAATATTTCTGTATAG	NA	False	NA	13	True	AATAAA	-14	NA	20736481	20740969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20736564_20737269_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
ENSMUSG00000001131.12_2	chrX	+	789	5	NIC	ENSMUSG00000001131.12	novel	883	6	NA	NA	8	-6	combination_of_known_splicesites	FALSE	canonical	3	24	junction_2	293.187226870476	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCAGCAATATTTCTGTA	NA	False	NA	10	True	AATAAA	-11	NA	20736412	20740966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_20736564_20737272_20737402_20739288_20739416_20739606_20739732_20740709
ENSMUSG00000001134.10_1	chrX	-	3035	10	Fusion	ENSMUSG00000009406.14_ENSMUSG00000001134.10	novel	3548	6	NA	NA	1	-766	multi-exon	FALSE	canonical	1	4	junction_5	264.516516789256	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGCTGTTGGTATTTTT	NA	False	NA	-6	True	AATATA	-19	NA	20828229	20800399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792_20808037_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000001134.10_14	chrX	-	635	7	FSM	ENSMUSG00000001134.10	ENSMUST00000001162.10	636	7	5	-4	-4	-2	multi-exon	FALSE	canonical	3	21	junction_5	225.323039705713	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACATAGTCCTTTTTTC	NA	False	NA	-10	True	ATTAAA	-18	NA	20828234	20818163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827873_20828026_20828172
ENSMUSG00000001134.10_3	chrX	-	464	6	NIC	ENSMUSG00000001134.10	novel	875	7	NA	NA	-3	-2	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	227.721760049408	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACATAGTCCTTTTTTC	NA	False	NA	-10	True	ATTAAA	-18	NA	20828216	20818163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_20818263_20818446_20818511_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000001134.10_4	chrX	-	992	6	NIC	ENSMUSG00000001134.10	novel	875	7	NA	NA	0	-24	intron_retention	FALSE	canonical	3	539	junction_4	46.7478341744299	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATGGACTGAATGGGC	NA	False	NA	NA	False	NA	NA	NA	20828213	20817924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000001134.10_5	chrX	-	585	7	FSM	ENSMUSG00000001134.10	ENSMUST00000123836.2	875	7	27	263	1	-2	multi-exon	FALSE	canonical	3	501	junction_1	60.2699943771544	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACATAGTCCTTTTTTC	NA	False	NA	-10	True	ATTAAA	-18	NA	20828229	20818163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000001138.14_0	chr1	+	4140	8	FSM	ENSMUSG00000001138.14	ENSMUST00000001166.14	5193	8	29	1024	29	-1024	multi-exon	FALSE	canonical	3	58	junction_3	12.7918979460135	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGATACGGTGTGAAGACT	NA	False	NA	25	True	NA	NA	NA	36550976	36566294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_36552235_36558032_36558177_36559158_36559309_36559599_36559770_36559899_36559997_36560285_36560420_36560781_36560921_36564246
ENSMUSG00000001138.14_1	chr1	+	4138	8	NNC	ENSMUSG00000001138.14	novel	5193	8	NA	NA	28	-1024	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	25.5957585772107	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGATACGGTGTGAAGACT	NA	False	NA	25	True	NA	NA	NA	36550975	36566294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_36552235_36558032_36558177_36559161_36559309_36559599_36559770_36559899_36559997_36560285_36560420_36560781_36560921_36564246
ENSMUSG00000001138.14_18	chr1	+	1603	1	ISM	ENSMUSG00000001138.14	ENSMUST00000001166.14	5193	8	13744	1024	4850	-1024	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGATACGGTGTGAAGACT	6978	False	NA	25	True	NA	NA	NA	36564691	36566294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_36564700_36566300
ENSMUSG00000001138.14_2	chr1	+	4431	7	NIC	ENSMUSG00000001138.14	novel	5193	8	NA	NA	29	-1024	intron_retention	FALSE	canonical	3	67	junction_1	11.3968806648525	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGATACGGTGTGAAGACT	NA	False	NA	25	True	NA	NA	NA	36550976	36566294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_36552235_36558032_36558177_36559158_36559770_36559899_36559997_36560285_36560420_36560781_36560921_36564246
ENSMUSG00000001138.14_8	chr1	+	3908	9	FSM	ENSMUSG00000001138.14	ENSMUST00000097776.4	5292	9	360	1024	360	-1024	multi-exon	FALSE	canonical	1	4	junction_7	33.4680351230842	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGATACGGTGTGAAGACT	NA	False	NA	25	True	NA	NA	NA	36551307	36566294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_36552235_36558032_36558177_36559158_36559309_36559599_36559770_36559899_36559997_36560285_36560420_36560781_36560921_36563114_36563214_36564246
ENSMUSG00000001143.14_1	chr1	-	2237	8	FSM	ENSMUSG00000001143.14	ENSMUST00000125304.8	3378	8	15	1126	1	-5	multi-exon	FALSE	canonical	3	121	junction_1	29.2707278728098	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCATGAGTTCTGGCTCAG	NA	False	NA	-8	True	CATAAA	-16	NA	36484337	36462271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ENSMUSG00000001143.14_2	chr1	-	2192	8	NIC	ENSMUSG00000001143.14	novel	3378	8	NA	NA	24	2	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	65.1654096299939	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTGGCTCAGTGGCCTT	NA	False	NA	-1	True	CATAAA	-23	NA	36484314	36462264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482600_36482691_36484130
ENSMUSG00000001143.14_26	chr1	-	1421	6	ISM	ENSMUSG00000001143.14	ENSMUST00000125304.8	3378	8	18	5417	4	910	5prime_fragment	FALSE	canonical	3	153	junction_4	20.8480214888608	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTATATAGTTTTATTG	NA	False	NA	NA	False	TATAAA	-13	NA	36484334	36466562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ENSMUSG00000001143.14_5	chr1	-	1089	8	NIC	ENSMUSG00000001143.14	novel	705	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	59.6068753738756	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGAGAGTTTCTACTCCC	NA	False	NA	-1	True	AATAAA	-16	NA	36484337	36458951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36459117_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ENSMUSG00000001143.14_6	chr1	-	3701	7	NIC	ENSMUSG00000001143.14	novel	3378	8	NA	NA	1	4	intron_retention	FALSE	canonical	3	153	junction_5	19.8997487421324	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTGTCAGAAGTGATCT	NA	False	NA	NA	False	AATAGA	-17	NA	36484337	36461141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ENSMUSG00000001150.8_2	chr10	+	6431	29	FSM	ENSMUSG00000001150.8	ENSMUST00000170795.3	6427	29	-5	1	-5	0	multi-exon	FALSE	canonical	3	127	junction_5	51.5606810130608	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCGCCTTAGTTTTATG	NA	False	NA	11	True	AATAAA	-17	NA	76304755	76351690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_76305049_76305782_76307087_76307256_76307484_76312347_76312427_76312616_76312759_76313553_76313745_76316834_76316975_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
ENSMUSG00000001150.8_31	chr10	+	5333	28	ISM	ENSMUSG00000001150.8	ENSMUST00000170795.3	6427	29	1827	1	1827	0	3prime_fragment	FALSE	canonical	3	127	junction_4	50.744930889439	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCGCCTTAGTTTTATG	NA	False	NA	11	True	AATAAA	-17	NA	76306587	76351690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_76307087_76307256_76307484_76312347_76312427_76312616_76312759_76313553_76313745_76316834_76316975_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
ENSMUSG00000001150.8_40	chr10	+	4158	23	ISM	ENSMUSG00000001150.8	ENSMUST00000170795.3	6427	29	12110	2	-81	-1	3prime_fragment	FALSE	canonical	3	162	junction_1	37.3435303124698	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCCGCCTTAGTTTTAT	NA	False	NA	10	True	AATAAA	-16	NA	76316870	76351689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_76316975_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
ENSMUSG00000001151.11_11	chr10	-	4368	19	ISM	ENSMUSG00000001151.11	ENSMUST00000220395.2	6762	30	24386	2	21506	-2	3prime_fragment	TRUE	canonical	3	133	junction_9	32.6982085060661	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTCCTGGCTACAGCCAT	9484	False	NA	-18	True	AATAAA	-16	NA	76228360	76187098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684_76211135_76215738_76215890_76216050_76216274_76217066_76217260_76217853_76218022_76220574_76220740_76221537_76221705_76223260_76223364_76224685_76225367_76228027
ENSMUSG00000001151.11_22	chr10	-	1984	10	ISM	ENSMUSG00000001151.11	ENSMUST00000220395.2	6762	30	41805	9	-6274	-5	3prime_fragment	FALSE	canonical	3	133	junction_9	36.0219411874705	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGCTTCTCCTGGCTA	NA	False	NA	-25	True	AATAAA	-9	NA	76210941	76187105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684
ENSMUSG00000001151.11_4	chr10	-	9253	41	NNC	ENSMUSG00000001151.11	novel	9341	42	NA	NA	7	1	intron_retention	FALSE	canonical	3	35	junction_29	45.1796345160073	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTCCTGGCTACAGCCA	NA	False	NA	-19	True	AATAAA	-15	NA	76278553	76187099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684_76211135_76215738_76215890_76216050_76216274_76217066_76217260_76217853_76218022_76220574_76220740_76221537_76221705_76223260_76223364_76224685_76225367_76228027_76228874_76235689_76235861_76237165_76237370_76239591_76239709_76240255_76240486_76244531_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254404_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
ENSMUSG00000001151.11_41	chr10	-	9349	41	NIC	ENSMUSG00000001151.11	novel	9331	42	NA	NA	23	-2	intron_retention	FALSE	canonical	3	33	junction_11	46.6543071430709	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTCCTGGCTACAGCCAT	NA	False	NA	-18	True	AATAAA	-16	NA	76278597	76187098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684_76211135_76215738_76215890_76215996_76216274_76217066_76217260_76217853_76218022_76220574_76220740_76221537_76221705_76223260_76223364_76224685_76225367_76228027_76228874_76235689_76235861_76237165_76237370_76239591_76239709_76240255_76240486_76244531_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254401_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
ENSMUSG00000001151.11_5	chr10	-	9282	41	NIC	ENSMUSG00000001151.11	novel	9341	42	NA	NA	-24	-2	intron_retention	FALSE	canonical	3	73	junction_29	43.2194328398696	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTCCTGGCTACAGCCAT	NA	False	NA	-18	True	AATAAA	-16	NA	76278584	76187098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684_76211135_76215738_76215890_76216050_76216274_76217066_76217260_76217853_76218022_76220574_76220740_76221537_76221705_76223260_76223364_76224685_76225367_76228027_76228874_76235689_76235861_76237165_76237370_76239591_76239709_76240255_76240486_76244531_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254401_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
ENSMUSG00000001151.11_53	chr10	-	2269	11	ISM	ENSMUSG00000001151.11	ENSMUST00000220395.2	6762	30	36922	3	-11157	1	3prime_fragment	FALSE	canonical	3	133	junction_9	37.5105318544006	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTCCTGGCTACAGCCA	NA	False	NA	-19	True	AATAAA	-15	NA	76215824	76187099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684_76211135_76215738
ENSMUSG00000001151.11_6	chr10	-	3677	18	ISM	ENSMUSG00000001151.11	ENSMUST00000220395.2	6762	30	27739	1	-20340	-1	3prime_fragment	FALSE	canonical	3	133	junction_9	33.244194539622	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCTGGCTACAGCCATT	NA	False	NA	-17	True	AATAAA	-17	NA	76225007	76187097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684_76211135_76215738_76215890_76216050_76216274_76217066_76217260_76217853_76218022_76220574_76220740_76221537_76221705_76223260_76223364_76224685
ENSMUSG00000001156.10_2	chr6	-	4967	11	Fusion	ENSMUSG00000001156.10_ENSMUSG00000001158.14	novel	912	7	NA	NA	-11	-6	intron_retention	FALSE	canonical	3	6	junction_5	964.534607984597	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACATTGGTCTTCCTGTG	7666	False	NA	NA	False	AATAAA	-13	NA	86661484	86624029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr6_-_86628062_86628423_86628584_86630066_86630182_86640052_86640083_86645519_86645617_86652464_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
ENSMUSG00000001156.10_3	chr6	-	1340	1	ISM	ENSMUSG00000001156.10	ENSMUST00000001184.10	4666	6	20772	8	14716	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAACATTGGTCTTCCTG	NA	False	NA	NA	False	AATAAA	-11	NA	86625371	86624031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_86624000_86625400
ENSMUSG00000001156.10_4	chr6	-	2724	6	FSM	ENSMUSG00000001156.10	ENSMUST00000001184.10	4666	6	3	1939	3	35	multi-exon	FALSE	canonical	3	13	junction_5	4.44522215417857	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTTTGTCTGGTCCTTG	4026	False	NA	NA	False	CATAAA	-22	NA	86646140	86625962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_86628062_86628423_86628584_86630066_86630182_86640052_86640083_86645519_86645617_86645917
ENSMUSG00000001157.14_1	chr6	-	2902	14	FSM	ENSMUSG00000001157.14	ENSMUST00000001185.14	2949	14	39	8	39	-8	multi-exon	FALSE	canonical	3	303	junction_7	38.1766371135774	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGAATATGCTCCTGTT	NA	False	NA	-26	True	AATAAA	-12	NA	86710326	86668757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_86670034_86674430_86674519_86677493_86677640_86681480_86681557_86684384_86684455_86687496_86687635_86688570_86688662_86691156_86691242_86694367_86694434_86694973_86695087_86698322_86698421_86699550_86699648_86703054_86703179_86709892
ENSMUSG00000001157.14_26	chr6	-	176	1	FSM	ENSMUSG00000001157.14	ENSMUST00000203741.2	2750	1	1747	827	1747	-743	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAAAGCTTCATTGCA	NA	False	NA	NA	False	NA	NA	NA	86692128	86691952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_86692000_86692100
ENSMUSG00000001157.14_4	chr6	-	2970	14	NIC	ENSMUSG00000001157.14	novel	2949	14	NA	NA	37	-8	combination_of_known_junctions	FALSE	canonical	3	16	junction_9	102.041585675158	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGAATATGCTCCTGTT	NA	False	NA	-26	True	AATAAA	-12	NA	86710328	86668757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_86670034_86674430_86674519_86677493_86677640_86681480_86681557_86684384_86684455_86687496_86687635_86688570_86688662_86691156_86691242_86694367_86694500_86694973_86695087_86698322_86698421_86699550_86699648_86703054_86703179_86709892
ENSMUSG00000001158.14_0	chr6	-	796	6	FSM	ENSMUSG00000001158.14	ENSMUST00000001186.11	885	6	19	70	-12	-70	multi-exon	FALSE	canonical	3	1763	junction_5	100.541732628794	449	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTATATTTATTTGACAA	7665	False	NA	-16	True	AATAAA	-16	NA	86661485	86652202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
ENSMUSG00000001173.16_3	chrX	+	5135	23	NIC	ENSMUSG00000001173.16	novel	5253	24	NA	NA	9	-5	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	25.9866860380401	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACTCATTGTGATCTGA	NA	False	NA	12	True	AATAAA	-13	NA	47001352	47054740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_47001569_47001845_47001926_47005351_47005432_47009037_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47020660_47020823_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
ENSMUSG00000001173.16_4	chrX	+	5144	24	FSM	ENSMUSG00000001173.16	ENSMUST00000001202.15	5253	24	104	5	24	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	28.8803018275155	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACTCATTGTGATCTGA	NA	False	NA	12	True	AATAAA	-13	NA	47001367	47054740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_47001569_47001845_47001926_47005351_47005432_47009037_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47020660_47020823_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47045086_47045111_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
ENSMUSG00000001173.16_47	chrX	+	3009	5	FSM	ENSMUSG00000001173.16	ENSMUST00000115013.2	2910	5	2	-101	2	-4	multi-exon	FALSE	canonical	3	96	junction_3	10.4163333279998	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCATTGTGATCTGAC	NA	False	NA	13	True	AATAAA	-14	NA	47049167	47054741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
ENSMUSG00000001173.16_52	chrX	+	1666	1	ISM	ENSMUSG00000001173.16	ENSMUST00000001202.15	5253	24	51811	5	3909	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACTCATTGTGATCTGA	NA	False	NA	12	True	AATAAA	-13	NA	47053074	47054740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_47053100_47054700
ENSMUSG00000001175.17_0	chr12	+	1516	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	94	2505	0	814	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	3067	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAGTGGTGTTAAATGC	9259	False	NA	24	True	AATAAA	-13	NA	100165787	100173568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
ENSMUSG00000001211.16_3	chr10	-	1698	10	FSM	ENSMUSG00000001211.16	ENSMUST00000001240.12	5980	10	92	4190	92	243	multi-exon	FALSE	canonical	3	264	junction_9	65.0870262621847	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTTTGTTTATTATCAG	NA	False	NA	NA	False	NA	NA	NA	78188184	78109201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78188046
ENSMUSG00000001211.16_4	chr10	-	1476	1	ISM	ENSMUSG00000001211.16	ENSMUST00000001240.12	5980	10	79413	2376	5407	9	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTCTCTTTTTCCTTCA	NA	False	NA	-4	True	AATAAA	-14	NA	78108863	78107387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_78107400_78108900
ENSMUSG00000001211.16_5	chr10	-	3583	11	NIC	ENSMUSG00000001211.16	novel	3513	11	NA	NA	90	-7	combination_of_known_junctions	FALSE	canonical	3	187	junction_10	110.528910245239	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTCAGAATAATGCTTT	NA	False	NA	-20	True	ATTAAA	-6	NA	78188186	78107403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460_78187546_78188046
ENSMUSG00000001227.13_2	chr17	-	3765	17	FSM	ENSMUSG00000001227.13	ENSMUST00000001256.11	3736	17	-29	0	-29	0	multi-exon	FALSE	canonical	2	8	junction_2	3.37036719067819	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTGACTCTGGGTCAGC	8322	False	NA	NA	False	AATAAA	-22	NA	56447372	56430084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56431918_56432332_56432392_56432516_56432595_56433216_56433367_56433449_56433633_56433939_56434090_56434477_56434610_56435249_56435468_56436407_56436497_56436972_56437093_56437705_56437797_56438112_56438215_56438522_56438586_56438742_56438804_56439497_56439622_56439715_56439869_56447213
ENSMUSG00000001227.13_3	chr17	-	3928	17	FSM	ENSMUSG00000001227.13	ENSMUST00000167545.3	3156	17	-90	-682	-90	0	multi-exon	FALSE	canonical	0	0	junction_16	4.38570119821221	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTGACTCTGGGTCAGC	1005	False	NA	NA	False	AATAAA	-22	NA	56440933	56430084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56431918_56432332_56432392_56432516_56432595_56433216_56433367_56433449_56433633_56433939_56434090_56434477_56434610_56435249_56435468_56436407_56436497_56436972_56437093_56437705_56437797_56438112_56438215_56438522_56438586_56438742_56438804_56439497_56439622_56439715_56439869_56440611
ENSMUSG00000001228.15_136	chr17	+	3389	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	1	1	1	-1	multi-exon	FALSE	canonical	3	638	junction_1	450.210766613816	912	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGGCGCACGTCTTTA	1448	False	NA	35	True	AATAAA	-19	NA	56611348	56630485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ENSMUSG00000001228.15_137	chr17	+	3365	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113035.8	3402	17	36	1	1	-1	multi-exon	FALSE	canonical	3	348	junction_6	590.514232338011	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGGCGCACGTCTTTA	1448	False	NA	35	True	AATAAA	-19	NA	56611348	56630485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ENSMUSG00000001228.15_4	chr17	+	3510	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	75	1	-4	-1	multi-exon	TRUE	canonical	3	1413	junction_6	319.856779473251	2149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGGCGCACGTCTTTA	495	False	NA	35	True	AATAAA	-19	NA	56610395	56630485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ENSMUSG00000001228.15_5	chr17	+	3482	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113038.8	3483	17	0	1	0	-1	multi-exon	FALSE	canonical	3	348	junction_6	505.023262923353	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGGCGCACGTCTTTA	499	False	NA	35	True	AATAAA	-19	NA	56610399	56630485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ENSMUSG00000001229.10_0	chr17	-	3504	21	FSM	ENSMUSG00000001229.10	ENSMUST00000038794.6	3374	21	5	-135	5	125	multi-exon	FALSE	canonical	3	103	junction_20	12.6925174807837	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAAGTGGTGCCGCAG	NA	False	NA	NA	False	ATTAAA	-8	NA	56525884	56493681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56494462_56495267_56495380_56496322_56496466_56496989_56497143_56497684_56497832_56498013_56498160_56501415_56501552_56501907_56502061_56503087_56503168_56505971_56506135_56506255_56506434_56507582_56507684_56509840_56509903_56511171_56511301_56512193_56512308_56512452_56512622_56512696_56512871_56513776_56513890_56518579_56518834_56524408_56524462_56525740
ENSMUSG00000001229.10_4	chr17	-	3623	22	NIC	ENSMUSG00000001229.10	novel	3374	21	NA	NA	5	125	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	37.462241005228	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAAGTGGTGCCGCAG	NA	False	NA	NA	False	ATTAAA	-8	NA	56525884	56493681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_56494462_56495267_56495380_56496322_56496466_56496761_56496881_56496989_56497143_56497684_56497832_56498013_56498160_56501415_56501552_56501907_56502061_56503087_56503168_56505971_56506135_56506255_56506434_56507582_56507684_56509840_56509903_56511171_56511301_56512193_56512308_56512452_56512622_56512696_56512871_56513776_56513890_56518579_56518834_56524408_56524462_56525740
ENSMUSG00000001229.10_5	chr17	-	4752	20	ISM	ENSMUSG00000001229.10	ENSMUST00000038794.6	3374	21	36	-135	36	125	intron_retention	FALSE	canonical	3	120	junction_19	10.4521068400644	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAAGTGGTGCCGCAG	NA	False	NA	NA	False	ATTAAA	-8	NA	56525853	56493681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56494462_56495267_56495380_56496322_56496466_56496989_56497143_56497684_56497832_56498013_56498160_56501415_56501552_56501907_56502061_56503087_56503168_56505971_56506135_56506255_56506434_56507582_56507684_56509840_56509903_56511171_56511301_56512193_56512308_56512452_56512622_56512696_56512871_56513776_56513890_56518579_56518834_56524408
ENSMUSG00000001240.14_0	chr11	+	879	4	FSM	ENSMUSG00000001240.14	ENSMUST00000129680.8	1178	4	295	4	11	-4	multi-exon	FALSE	canonical	2	5	junction_2	6.16441400296898	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATATTGCCTTCCTAGTG	NA	False	NA	13	True	AATAAA	-14	NA	101137148	101139072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101137399_101137880_101137971_101138411_101138515_101138636
ENSMUSG00000001240.14_2	chr11	+	1577	9	NIC	ENSMUSG00000001240.14	novel	1478	8	NA	NA	3	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	590.021808389317	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCGGCCTGTTACTACT	NA	False	NA	16	True	ATTAAA	-13	NA	101137219	101150371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101137399_101137880_101137971_101138411_101138515_101144429_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
ENSMUSG00000001247.17_0	chr7	-	1906	10	FSM	ENSMUSG00000001247.17	ENSMUST00000205961.2	2021	10	113	2	113	-2	multi-exon	FALSE	canonical	3	74	junction_7	47.1029867208513	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATCTAAGCCTCTTGT	NA	False	NA	-9	True	AATAAA	-11	NA	30672634	30657205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
ENSMUSG00000001247.17_2	chr7	-	1846	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	221	4	116	-2	multi-exon	TRUE	canonical	3	93	junction_6	34.291945118351	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATCTAAGCCTCTTGT	NA	False	NA	-9	True	AATAAA	-11	NA	30672631	30657205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
ENSMUSG00000001248.16_0	chr7	-	2653	19	FSM	ENSMUSG00000001248.16	ENSMUST00000001280.14	2713	19	60	0	-8	0	multi-exon	FALSE	canonical	3	173	junction_6	41.078853711152	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5746	False	NA	-1	True	AATAAA	-15	NA	30850447	30829551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
ENSMUSG00000001248.16_1	chr7	-	2897	20	NIC	ENSMUSG00000001248.16	novel	2713	19	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_19	77.4223227918279	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	842	False	NA	-1	True	AATAAA	-15	NA	30855351	30829551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30854291_30854572_30855260
ENSMUSG00000001248.16_2	chr7	-	3735	18	FSM	ENSMUSG00000001248.16	ENSMUST00000185985.7	3722	18	-13	0	8	0	multi-exon	FALSE	canonical	3	189	junction_17	34.4459860006517	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5743	False	NA	-1	True	AATAAA	-15	NA	30850450	30829551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
ENSMUSG00000001248.16_23	chr7	-	2731	19	FSM	ENSMUSG00000001248.16	ENSMUST00000186634.7	2735	19	4	0	4	0	multi-exon	FALSE	canonical	3	18	junction_6	68.1079390234699	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5739	False	NA	-1	True	AATAAA	-15	NA	30850454	30829551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30834950_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
ENSMUSG00000001248.16_9	chr7	-	2747	19	NIC	ENSMUSG00000001248.16	novel	2713	19	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_18	68.1823308996809	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	4711	False	NA	-1	True	AATAAA	-15	NA	30851482	30829551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30851261
ENSMUSG00000001249.15_0	chr7	-	1767	13	FSM	ENSMUSG00000001249.15	ENSMUST00000168884.8	1762	13	-12	7	-4	1	multi-exon	TRUE	canonical	2	2	junction_11	3.2945662334618	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGGGTCTCTGCGTCTAC	9108	False	NA	NA	False	AATAAA	-13	NA	30814719	30798156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30798499_30798639_30798805_30798930_30799074_30799230_30799327_30801902_30802094_30802185_30802352_30802578_30802620_30802725_30802849_30802924_30803055_30808389_30808432_30808515_30808618_30814102_30814170_30814560
ENSMUSG00000001249.15_4	chr7	-	1815	14	FSM	ENSMUSG00000001249.15	ENSMUST00000108102.9	1830	14	6	9	-2	-1	multi-exon	FALSE	canonical	2	5	junction_11	2.8658363092611	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAATGGGTCTCTGCGTCT	9118	False	NA	NA	False	AATAAA	-11	NA	30814709	30798158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30798499_30798639_30798805_30798930_30799074_30799230_30799327_30801902_30802094_30802185_30802352_30802578_30802620_30802725_30802849_30802924_30803055_30808389_30808432_30808515_30808618_30810138_30810199_30814102_30814170_30814560
ENSMUSG00000001270.10_0	chr12	-	1430	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	1	-14	-1	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	7583	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTGAGTGTTGCTTCTC	NA	False	NA	-9	True	AATAAA	-20	NA	111638731	111635795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
ENSMUSG00000001280.14_1	chr15	+	7810	6	FSM	ENSMUSG00000001280.14	ENSMUST00000001326.7	7754	6	-78	22	-31	-22	multi-exon	FALSE	canonical	3	93	junction_1	20.1295802241378	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATCATGTCTCTGGTG	NA	False	NA	8	True	ATTAAA	-9	NA	102314736	102344817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102314858_102316206_102316368_102316650_102318155_102334065_102334232_102338391_102338592_102339159
ENSMUSG00000001280.14_12	chr15	+	3460	1	ISM	ENSMUSG00000001280.14	ENSMUST00000001326.7	7754	6	26543	22	25335	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATCATGTCTCTGGTG	9382	False	NA	8	True	ATTAAA	-9	NA	102341357	102344817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102341400_102344800
ENSMUSG00000001280.14_8	chr15	+	6925	4	ISM	ENSMUSG00000001280.14	ENSMUST00000001326.7	7754	6	2439	22	1231	-22	3prime_fragment	FALSE	canonical	3	109	junction_2	16.0485374896143	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATCATGTCTCTGGTG	1835	False	NA	8	True	ATTAAA	-9	NA	102317253	102344817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102318155_102334065_102334232_102338391_102338592_102339159
ENSMUSG00000001281.11_0	chr15	-	1334	7	ISM	ENSMUSG00000001281.11	ENSMUST00000001327.11	2683	15	12714	1	-2157	-1	3prime_fragment	FALSE	canonical	3	40	junction_6	5.87130498460285	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGAGCCTCTACTTTAC	8562	False	NA	-2	True	AATAAA	-13	NA	102127665	102124430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608
ENSMUSG00000001281.11_1	chr15	-	2642	15	FSM	ENSMUSG00000001281.11	ENSMUST00000001327.11	2683	15	38	3	2	0	multi-exon	FALSE	canonical	3	29	junction_13	6.6719791758105	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTTGAGCCTCTACTTT	NA	False	NA	-4	True	AATAAA	-11	NA	102140341	102124432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736_102132908_102132992_102133195_102135832_102136037_102140285
ENSMUSG00000001281.11_10	chr15	-	617	3	ISM	ENSMUSG00000001281.11	ENSMUST00000001327.11	2683	15	14867	3	-4	0	3prime_fragment	FALSE	canonical	3	41	junction_1	8	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTTGAGCCTCTACTTT	NA	False	NA	-4	True	AATAAA	-11	NA	102125512	102124432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_102124703_102124906_102125068_102125326
ENSMUSG00000001281.11_3	chr15	-	2241	13	ISM	ENSMUSG00000001281.11	ENSMUST00000001327.11	2683	15	7326	3	7290	0	3prime_fragment	FALSE	canonical	3	39	junction_10	5.29150262212918	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTTGAGCCTCTACTTT	3174	False	NA	-4	True	AATAAA	-11	NA	102133053	102124432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736_102132908_102132992
ENSMUSG00000001281.11_5	chr15	-	2439	14	NIC	ENSMUSG00000001281.11	novel	2683	15	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_13	12.7794213275663	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTTGAGCCTCTACTTT	NA	False	NA	-4	True	AATAAA	-11	NA	102140342	102124432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736_102132908_102132992_102133195_102140285
ENSMUSG00000001281.11_7	chr15	-	2247	12	ISM	ENSMUSG00000001281.11	ENSMUST00000001327.11	2683	15	7407	1	7371	-1	3prime_fragment	FALSE	canonical	3	39	junction_10	5.51781487472492	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGAGCCTCTACTTTAC	3255	False	NA	-2	True	AATAAA	-13	NA	102132972	102124430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736
ENSMUSG00000001285.13_3	chr15	+	1167	7	FSM	ENSMUSG00000001285.13	ENSMUST00000113682.9	1480	7	23	290	-6	-2	multi-exon	FALSE	canonical	3	485	junction_2	12.1620995994387	306	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGACCCAGTCCCTGATC	5950	False	NA	14	True	AATAAA	-15	NA	102240166	102246284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
ENSMUSG00000001288.16_1	chr15	-	2671	8	FSM	ENSMUSG00000001288.16	ENSMUST00000063339.14	2718	8	45	2	45	-2	multi-exon	FALSE	canonical	3	57	junction_4	9.19183310979738	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATCCGGGTGTGGATCCC	NA	False	NA	-4	True	AATAAA	-12	NA	102154890	102143376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102154494
ENSMUSG00000001288.16_4	chr15	-	2888	10	FSM	ENSMUSG00000001288.16	ENSMUST00000043172.15	2953	10	63	2	63	0	multi-exon	FALSE	canonical	1	1	junction_9	31.3049516849971	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCGGGTGTGGATCCCTC	NA	False	NA	-2	True	AATAAA	-14	NA	102165889	102143374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102160853_102161180_102164904_102164975_102165674
ENSMUSG00000001288.16_8	chr15	-	2383	8	NIC	ENSMUSG00000001288.16	novel	2718	8	NA	NA	269	-2	combination_of_known_junctions	FALSE	canonical	3	4	junction_7	24.6344706226284	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATCCGGGTGTGGATCCC	NA	False	NA	-4	True	AATAAA	-12	NA	102151755	102143376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102151647
ENSMUSG00000001289.13_0	chr15	+	625	6	FSM	ENSMUSG00000001289.13	ENSMUST00000166658.8	1062	6	51	386	-1	1	multi-exon	FALSE	canonical	3	835	junction_1	29.5932424718887	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGGTGGTCTATTCTT	385	False	NA	27	True	AATAAA	-15	NA	102234601	102239922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102234696_102234867_102234971_102235252_102235285_102236956_102237032_102237146_102237253_102239707
ENSMUSG00000001289.13_4	chr15	+	590	5	FSM	ENSMUSG00000001289.13	ENSMUST00000001335.7	570	5	-19	-1	2	1	multi-exon	FALSE	canonical	3	11	junction_2	370.883741892254	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGGTGGTCTATTCTT	388	False	NA	27	True	AATAAA	-15	NA	102234604	102239922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102234696_102234867_102234971_102236956_102237032_102237146_102237253_102239707
ENSMUSG00000001300.17_0	chr8	-	4780	5	FSM	ENSMUSG00000001300.17	ENSMUST00000001319.15	4793	5	4	9	1	-9	multi-exon	FALSE	canonical	0	0	junction_2	1.29903810567666	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAAAAAGCGCCTTCAAA	NA	False	NA	NA	False	AATAAA	-14	NA	8711238	8667442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_8670977_8672330_8672445_8673147_8673241_8689205_8689490_8710483
ENSMUSG00000001305.6_1	chr1	-	1175	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	33	113	0	1	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAATCTCTGCTTCCCTGC	NA	False	NA	-15	True	ATTAAA	-13	NA	186481522	186453287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
ENSMUSG00000001305.6_5	chr1	-	4365	3	NIC	ENSMUSG00000001305.6	novel	3092	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	1054	junction_2	5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAATCTCTGCTTCCCTG	NA	False	NA	-16	True	ATTAAA	-12	NA	186481522	186453288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_186453744_186468312_186472061_186481360
ENSMUSG00000001313.13_1	chr11	+	1530	6	FSM	ENSMUSG00000001313.13	ENSMUST00000153185.8	1578	6	42	6	42	-6	multi-exon	FALSE	canonical	3	12	junction_1	71.7568115233669	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGCTATGGACTTAGT	7851	False	NA	15	True	AATAAA	-15	NA	101355866	101362673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101355971_101356456_101356760_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUSG00000001313.13_11	chr11	+	711	1	ISM	ENSMUSG00000001313.13	ENSMUST00000153185.8	1578	6	6138	6	2962	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGCTATGGACTTAGT	NA	False	NA	15	True	AATAAA	-15	NA	101361962	101362673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_101362000_101362700
ENSMUSG00000001313.13_2	chr11	+	1238	5	NIC	ENSMUSG00000001313.13	novel	1578	6	NA	NA	30	-7	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	68.3245929369506	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAACAGCTATGGACTTAG	7839	False	NA	14	True	AATAAA	-14	NA	101355854	101362672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101355971_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUSG00000001313.13_5	chr11	+	1291	5	FSM	ENSMUSG00000001313.13	ENSMUST00000134980.2	831	5	282	-742	282	-6	multi-exon	FALSE	canonical	3	18	junction_1	62.3097103186975	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGCTATGGACTTAGT	8576	False	NA	15	True	AATAAA	-15	NA	101356591	101362673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101356760_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUSG00000001313.13_6	chr11	+	1356	5	FSM	ENSMUSG00000001313.13	ENSMUST00000001347.7	1394	5	32	6	32	-6	multi-exon	FALSE	canonical	3	109	junction_1	23.8051990119806	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGCTATGGACTTAGT	NA	False	NA	15	True	AATAAA	-15	NA	101359032	101362673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101359266_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUSG00000001323.18_0	chr11	-	2925	8	FSM	ENSMUSG00000001323.18	ENSMUST00000121738.8	3183	8	251	7	6	-7	multi-exon	FALSE	canonical	3	39	junction_7	16.4527771987291	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGTAATACATCTCATT	NA	False	NA	NA	False	AATAAA	-3	NA	74816523	74797631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74816444
ENSMUSG00000001323.18_1	chr11	-	3105	9	FSM	ENSMUSG00000001323.18	ENSMUST00000065211.9	3699	9	123	471	0	-11	multi-exon	FALSE	canonical	3	15	junction_8	25.2140833662459	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACTTTCTCAAAACAATA	NA	False	NA	NA	False	NA	NA	NA	74816501	74797655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74810262_74810489_74816444
ENSMUSG00000001323.18_12	chr11	-	3157	9	NIC	ENSMUSG00000001323.18	novel	3699	9	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	5	junction_8	27.485223302713	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATACATCTCATTTATTT	NA	False	NA	NA	False	AATAAA	-8	NA	74816489	74797626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74810262_74810489_74816409
ENSMUSG00000001323.18_3	chr11	-	1553	8	NIC	ENSMUSG00000001323.18	novel	3183	8	NA	NA	-7	-1364	combination_of_known_splicesites	FALSE	canonical	1	4	junction_7	26.4436250563808	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGTGAACTTACAGCCC	NA	False	NA	NA	False	AATAAA	-13	NA	74816493	74799008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74816409
ENSMUSG00000001333.10_1	chr4	+	2715	3	NIC	ENSMUSG00000001333.10	novel	2042	5	NA	NA	5494	820	combination_of_known_splicesites	FALSE	canonical	3	5	junction_2	3	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTATTGGTCTATTATG	NA	False	NA	NA	False	AGTAAA	-15	NA	129186917	129203172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_129188170_129200134_129200260_129201834
ENSMUSG00000001334.10_0	chr4	+	1569	6	FSM	ENSMUSG00000087416.2_ENSMUSG00000001334.10	ENSMUST00000102600.4	2763	6	-108	1302	-108	-1302	multi-exon	FALSE	canonical	0	0	junction_1	1.16619037896906	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTCTGCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129030683	129037084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129030957_129032483_129032600_129033135_129033335_129033633_129033724_129035854_129035989_129036327
ENSMUSG00000001348.16_0	chr9	-	1383	5	FSM	ENSMUSG00000001348.16	ENSMUST00000069330.14	1356	5	-31	4	-15	0	multi-exon	FALSE	canonical	3	129	junction_4	52.4374627532645	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	8881	False	NA	-23	True	AATAAA	-17	NA	22043142	22038026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22043032
ENSMUSG00000001348.16_14	chr9	-	2001	4	NIC	ENSMUSG00000001348.16	novel	1447	6	NA	NA	-429	0	intron_retention	FALSE	canonical	3	129	junction_3	59.7457576364679	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	8467	False	NA	-23	True	AATAAA	-17	NA	22043556	22038026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_22038559_22038970_22039317_22040826_22041426_22043032
ENSMUSG00000001348.16_2	chr9	-	3381	3	ISM	ENSMUSG00000001348.16	ENSMUST00000217643.2	1447	6	-200	-9	-200	2	intron_retention	FALSE	canonical	3	251	junction_1	4.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGGTGTGTCATCAAGGT	8696	False	NA	-21	True	AATAAA	-19	NA	22043327	22038024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_22038559_22038970_22039317_22040826
ENSMUSG00000001348.16_3	chr9	-	1421	5	FSM	ENSMUSG00000001348.16	ENSMUST00000213815.2	1419	5	5	-7	5	0	multi-exon	FALSE	canonical	3	35	junction_4	92.7425873048623	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	9079	False	NA	-23	True	AATAAA	-17	NA	22042944	22038026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042796
ENSMUSG00000001348.16_4	chr9	-	1419	5	FSM	ENSMUSG00000001348.16	ENSMUST00000115315.3	1349	5	-70	0	-70	0	multi-exon	TRUE	canonical	3	21	junction_4	98.7734149455206	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	10009	False	NA	-23	True	AATAAA	-17	NA	22041964	22038026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818
ENSMUSG00000001348.16_5	chr9	-	1332	5	NNC	ENSMUSG00000001348.16	novel	1349	5	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_4	83.7048385698222	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	9079	False	NA	-23	True	AATAAA	-17	NA	22042944	22038026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042885
ENSMUSG00000001366.15_0	chr9	-	2115	13	FSM	ENSMUSG00000001366.15	ENSMUST00000085311.13	2155	13	33	7	-19	-4	multi-exon	FALSE	non_canonical	2	34	junction_11	11.6437274482396	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAATATGTGTGGATGG	NA	False	NA	-4	True	AATAAA	-24	NA	78015905	77988787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78015572
ENSMUSG00000001366.15_17	chr9	-	1232	6	FSM	ENSMUSG00000001366.15	ENSMUST00000159099.8	1201	6	-31	0	21	0	multi-exon	FALSE	non_canonical	2	34	junction_4	15.3961034031342	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTTTTCATATTGATTT	NA	False	NA	NA	False	AATAAA	-15	NA	78015917	78002794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78015572
ENSMUSG00000001366.15_18	chr9	-	2001	12	NIC	ENSMUSG00000001366.15	novel	2155	13	NA	NA	-2	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_11	19.5448202856921	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTGTGGATGGCCTT	NA	False	NA	0	True	AATAAA	-28	NA	78015871	77988783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78015572
ENSMUSG00000001366.15_3	chr9	-	1842	13	FSM	ENSMUSG00000001366.15	ENSMUST00000001402.14	1850	13	4	4	4	-4	multi-exon	FALSE	non_canonical	2	18	junction_12	15.7920514464996	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAATATGTGTGGATGG	NA	False	NA	-4	True	AATAAA	-24	NA	78016343	77988787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78016283
ENSMUSG00000001376.18_1	chr6	+	3525	28	FSM	ENSMUSG00000001376.18	ENSMUST00000001412.17	3788	28	40	223	0	-7	multi-exon	FALSE	canonical	2	105	junction_25	21.3495308879564	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTACCAGGTGTGTGAG	2	True	NA	15	True	AATAAA	-12	NA	3498421	3603308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3522682_3522719_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
ENSMUSG00000001380.8_2	chr18	-	1936	13	FSM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	50	3	-33	-3	multi-exon	FALSE	canonical	3	550	junction_8	68.8118913334671	799	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCTGTCTGTGTCCTTGA	NA	False	NA	-5	True	AATAAA	-13	NA	36916208	36899583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
ENSMUSG00000001383.10_0	chr18	+	1258	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	52	1000	52	583	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTTAACCTCGTTTCTT	6668	False	NA	22	True	ATTAAA	-19	NA	36926980	36931719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
ENSMUSG00000001383.10_7	chr18	+	1227	5	ISM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	420	1000	420	583	3prime_fragment	FALSE	canonical	3	554	junction_4	81.7201780467958	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTTAACCTCGTTTCTT	7036	False	NA	22	True	ATTAAA	-19	NA	36927348	36931719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
ENSMUSG00000001403.14_0	chr2	+	928	6	FSM	ENSMUSG00000001403.14	ENSMUST00000088248.13	967	6	32	7	27	-7	multi-exon	FALSE	canonical	3	1606	junction_1	43.6458474542539	660	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAAATTGTTTTCTCAAG	NA	False	NA	NA	False	AATAAA	-18	NA	164611849	164614820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164614423
ENSMUSG00000001415.11_1	chr3	+	4427	22	FSM	ENSMUSG00000001415.11	ENSMUST00000001451.11	4448	22	19	2	19	-2	multi-exon	FALSE	canonical	3	253	junction_5	44.0686436309756	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTCTGCCTGCTGTGTCTT	NA	False	NA	11	True	AATAAA	-18	NA	88243585	88269643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
ENSMUSG00000001415.11_56	chr3	+	2683	11	ISM	ENSMUSG00000001415.11	ENSMUST00000001451.11	4448	22	15061	4	-1170	-4	3prime_fragment	FALSE	canonical	3	272	junction_1	47.0850294679742	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCACTCTGCCTGCTGTGTC	NA	False	NA	9	True	AATAAA	-16	NA	88258627	88269641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
ENSMUSG00000001415.11_68	chr3	+	1026	1	ISM	ENSMUSG00000001415.11	ENSMUST00000001451.11	4448	22	25052	1	776	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGCCTGCTGTGTCTTC	NA	False	NA	12	True	AATAAA	-19	NA	88268618	88269644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88268600_88269600
ENSMUSG00000001416.14_0	chr3	+	1935	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	41	1	4	0	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	3302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCGTTGTCATGTGTTTT	3845	False	NA	22	True	ATTAAA	-14	NA	88204463	88229073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
ENSMUSG00000001418.14_1	chr3	+	1505	6	FSM	ENSMUSG00000001418.14	ENSMUST00000177005.8	4219	6	28	2686	-4	46	multi-exon	FALSE	canonical	3	936	junction_4	66.9489357645064	799	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTTCCAGTCTCTCTTA	4023	False	NA	12	True	AATAGA	-15	NA	88232357	88235934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88232509_88232983_88233239_88233421_88233620_88233717_88233937_88235163_88235421_88235509
ENSMUSG00000001419.18_13	chr3	+	3828	9	ISM	ENSMUSG00000001419.18	ENSMUST00000119251.8	3488	10	-37	0	7	0	intron_retention	FALSE	canonical	3	138	junction_6	11.4891252930761	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGAGATTCTTCTGCT	6545	False	NA	22	True	NA	NA	NA	88049685	88077237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88049982_88062984_88063170_88063628_88063833_88065340_88065479_88066428_88066640_88066842_88066900_88068497_88068689_88070264_88070395_88074821
ENSMUSG00000001419.18_3	chr3	+	3518	10	FSM	ENSMUSG00000001419.18	ENSMUST00000119251.8	3488	10	-30	0	14	0	multi-exon	FALSE	canonical	3	119	junction_9	15.3260852434302	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGAGATTCTTCTGCT	6552	False	NA	22	True	NA	NA	NA	88049692	88077237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88049982_88062984_88063170_88063628_88063833_88065340_88065479_88066428_88066640_88066842_88066900_88068497_88068689_88070264_88070395_88074821_88075042_88075344
ENSMUSG00000001419.18_36	chr3	+	2731	1	ISM	ENSMUSG00000001419.18	ENSMUST00000001455.13	5401	11	26971	13	1091	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTTCTGATACCTCAGT	NA	False	NA	4	True	ATTAAA	-16	NA	88076649	88079380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88076600_88079400
ENSMUSG00000001419.18_6	chr3	+	3228	11	FSM	ENSMUSG00000001419.18	ENSMUST00000001455.13	5401	11	12	2161	12	-5	multi-exon	FALSE	canonical	3	49	junction_10	33.5177564881661	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTACAGATGAGATTCTT	6550	False	NA	17	True	NA	NA	NA	88049690	88077232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88049982_88062984_88063170_88063628_88063833_88065340_88065479_88066428_88066640_88066842_88066900_88068497_88068689_88070264_88070395_88074821_88075042_88075344_88075652_88075938
ENSMUSG00000001419.18_8	chr3	+	2926	10	NIC	ENSMUSG00000001419.18	novel	3488	10	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_9	42.4185494015688	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGAGATTCTTCTGCT	6550	False	NA	22	True	NA	NA	NA	88049690	88077237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_88049982_88062984_88063170_88063628_88063833_88065340_88065479_88066428_88066640_88066842_88066900_88068497_88068689_88070264_88070395_88074821_88075042_88075938
ENSMUSG00000001420.14_0	chr3	-	2530	4	NIC	ENSMUSG00000001420.14	novel	2406	4	NA	NA	-6	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	8.9566858950296	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCATTTAAAAATAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	88243461	88235966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_88237240_88239746_88239961_88240198_88240990_88243209
ENSMUSG00000001420.14_2	chr3	-	2603	3	ISM	ENSMUSG00000001420.14	ENSMUST00000107552.2	2063	4	63	-3	63	2	intron_retention	FALSE	canonical	3	19	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGCTCGTTCATTCT	NA	False	NA	NA	False	AATAAA	-13	NA	88241698	88236350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88237240_88239746_88239961_88240198
ENSMUSG00000001420.14_3	chr3	-	1968	4	FSM	ENSMUSG00000001420.14	ENSMUST00000001456.11	2406	4	49	389	-1	2	multi-exon	FALSE	canonical	3	8	junction_3	5.18544972870135	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGCTCGTTCATTCT	NA	False	NA	NA	False	AATAAA	-13	NA	88241762	88236350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241688
ENSMUSG00000001420.14_6	chr3	-	1993	4	FSM	ENSMUSG00000001420.14	ENSMUST00000107553.8	2053	4	58	2	58	-1	multi-exon	FALSE	canonical	1	1	junction_3	8.48528137423857	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTCCTGTGGCTCGTTCA	NA	False	NA	NA	False	AATAAA	-9	NA	88241517	88236354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241414
ENSMUSG00000001424.15_0	chr6	+	3458	24	FSM	ENSMUSG00000001424.15	ENSMUST00000001460.14	3482	24	12	12	1	-12	multi-exon	FALSE	canonical	3	582	junction_3	55.1049865830108	1589	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTACTGTCGTGGTGGA	5	True	NA	18	True	AATAAA	-19	NA	28480358	28888819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
ENSMUSG00000001435.16_0	chr10	-	4177	42	FSM	ENSMUSG00000001435.16	ENSMUST00000081654.13	5063	42	35	851	35	-13	multi-exon	FALSE	canonical	3	279	junction_22	34.7938605290869	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATTTACAACAGACTT	5970	False	NA	-9	True	AATAAA	-26	NA	77002347	76888862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894665_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76911981_76912009_76912992_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_77002123_77002195_77002272
ENSMUSG00000001435.16_9	chr10	-	4179	42	NNC	ENSMUSG00000001435.16	novel	5063	42	NA	NA	35	-8	at_least_one_novel_splicesite	FALSE	canonical	3	127	junction_6	49.9834594889811	182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTACAACAGACTTCCTGC	5970	False	NA	-4	True	AATAAA	-31	NA	77002347	76888857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894662_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76911981_76912009_76912992_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_77002123_77002195_77002272
ENSMUSG00000001436.16_16	chr10	+	1652	4	ISM	ENSMUSG00000001436.16	ENSMUST00000105410.10	2347	6	8926	7	-362	-7	3prime_fragment	FALSE	canonical	3	91	junction_1	3.68178700572909	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGGGCTTTTCTGTTGT	NA	False	NA	9	True	ATTAAA	-11	NA	76877971	76886258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_76878404_76878615_76878809_76880594_76880737_76885373
ENSMUSG00000001436.16_18	chr10	+	1538	1	NIC	ENSMUSG00000001436.16	novel	2309	6	NA	NA	6098	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCTTTTCTGTTGTGA	NA	False	NA	11	True	ATTAAA	-13	NA	76884722	76886260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_76884700_76886300
ENSMUSG00000001436.16_22	chr10	+	2398	6	NIC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	-17	-13	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	44.1832547465666	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTACCTTGGGCTTTTC	NA	False	NA	3	True	ATTAAA	-5	NA	76869084	76886252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_76869285_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
ENSMUSG00000001436.16_4	chr10	+	2261	6	FSM	ENSMUSG00000001436.16	ENSMUST00000144234.8	2309	6	40	8	40	-7	multi-exon	FALSE	canonical	0	0	junction_2	43.968170305347	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGGGCTTTTCTGTTGT	NA	False	NA	9	True	ATTAAA	-11	NA	76868557	76886258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_76868615_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
ENSMUSG00000001436.16_5	chr10	+	2302	6	FSM	ENSMUSG00000001436.16	ENSMUST00000105410.10	2347	6	38	7	-18	-7	multi-exon	FALSE	canonical	0	0	junction_2	40.1875602643405	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGGGCTTTTCTGTTGT	NA	False	NA	9	True	ATTAAA	-11	NA	76869083	76886258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_76869182_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
ENSMUSG00000001436.16_8	chr10	+	2398	6	NIC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	-16	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	46.9535941116332	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGGGCTTTTCTGTTGT	NA	False	NA	9	True	ATTAAA	-11	NA	76869085	76886258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_76869280_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
ENSMUSG00000001436.16_9	chr10	+	2515	5	NIC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	-20	-8	intron_retention	FALSE	canonical	0	0	junction_2	44.4606567652796	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTGGGCTTTTCTGTTG	NA	False	NA	8	True	ATTAAA	-10	NA	76869081	76886257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_76869182_76874183_76874414_76877649_76878809_76880594_76880737_76885373
ENSMUSG00000001440.6_0	chr11	-	4099	22	FSM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	-29	1824	-29	972	multi-exon	TRUE	canonical	3	682	junction_21	133.681077140662	1625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGCTTGGCCTTCTGTC	NA	False	NA	-11	True	GATAAA	-13	NA	97078736	97052363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
ENSMUSG00000001440.6_11	chr11	-	3420	19	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	6132	1820	6132	976	3prime_fragment	FALSE	canonical	3	859	junction_18	101.233259551919	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGGCCTTCTGTCCCTT	NA	False	NA	-7	True	GATAAA	-17	NA	97072575	97052359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450
ENSMUSG00000001440.6_14	chr11	-	2698	13	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	14681	1824	-7800	972	3prime_fragment	FALSE	canonical	3	879	junction_10	95.7129678895301	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGCTTGGCCTTCTGTC	NA	False	NA	-11	True	GATAAA	-13	NA	97064026	97052363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878
ENSMUSG00000001440.6_2	chr11	-	3624	20	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	2823	1824	2823	972	3prime_fragment	FALSE	canonical	3	824	junction_19	106.099989426167	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGCTTGGCCTTCTGTC	NA	False	NA	-11	True	GATAAA	-13	NA	97075884	97052363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752
ENSMUSG00000001440.6_7	chr11	-	2284	1	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	25879	5	2220	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACATTTTGCTGCTTCGT	NA	False	NA	-9	True	AATAAA	-20	NA	97052828	97050544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97050500_97052800
ENSMUSG00000001441.14_0	chr11	-	4126	23	FSM	ENSMUSG00000001441.14	ENSMUST00000001480.14	4215	23	87	2	3	-2	multi-exon	FALSE	canonical	3	268	junction_18	36.1553409289133	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTTGTTGGCCTGGTTC	NA	False	NA	-4	True	AATAAA	-11	NA	97171377	97096671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97098095_97103105_97103154_97103857_97104014_97104596_97104705_97108616_97108674_97109333_97109477_97113776_97113997_97115484_97115620_97117554_97117695_97120655_97120720_97122714_97122825_97125880_97125942_97126890_97126996_97128919_97129085_97131754_97131870_97132629_97132664_97132776_97132874_97133428_97133630_97135253_97135362_97139027_97139150_97149099_97149178_97158420_97158506_97171026
ENSMUSG00000001441.14_2	chr11	-	974	1	NIC	ENSMUSG00000001441.14	novel	2307	18	NA	NA	5643	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTTGTTGGCCTGGTTC	NA	False	NA	-4	True	AATAAA	-11	NA	97097645	97096671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97096700_97097600
ENSMUSG00000001444.3_0	chr11	-	2505	6	FSM	ENSMUSG00000001444.3	ENSMUST00000001484.3	2488	6	-20	3	-20	-3	multi-exon	FALSE	canonical	2	5	junction_1	1.26491106406735	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACGCCCTCCTTCTGTG	NA	False	NA	NA	False	AATAAA	-13	NA	97006177	96988899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_96990205_96990595_96990658_96990752_96990912_96992304_96992427_96992769_96992925_97005475
ENSMUSG00000001445.11_1	chr11	+	1670	5	FSM	ENSMUSG00000001445.11	ENSMUST00000001485.10	1708	5	25	13	-10	-13	multi-exon	FALSE	canonical	3	440	junction_1	35.8643276808586	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTAAAAGCCTGCCTAT	898	False	NA	-3	True	NA	NA	NA	96932410	96940026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96932479_96935353_96935524_96937855_96938021_96938238_96938384_96938904
ENSMUSG00000001445.11_2	chr11	+	1497	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	-10	-16	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTTTTAAAAGCCTGCC	898	False	NA	-6	True	NA	NA	NA	96932410	96940023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
ENSMUSG00000001467.6_0	chr5	-	2668	10	FSM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	290	973	-35	-973	multi-exon	FALSE	canonical	3	648	junction_6	50.6347365275053	1252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTATGTGTACTGGCTG	NA	False	NA	-6	True	NA	NA	NA	4154456	4132117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
ENSMUSG00000001472.18_0	chr8	+	2181	18	FSM	ENSMUSG00000001472.18	ENSMUST00000057934.10	2738	18	-5	562	-4	99	multi-exon	FALSE	canonical	3	157	junction_17	92.4052680533628	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCACCCGTGTCTTTTGTTT	NA	False	NA	22	True	NA	NA	NA	124100557	124128069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
ENSMUSG00000001472.18_1	chr8	+	5032	17	FSM	ENSMUSG00000001472.18	ENSMUST00000211932.2	5002	17	-34	4	-1	0	multi-exon	FALSE	canonical	3	455	junction_12	41.7738984744062	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100560	124130545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363
ENSMUSG00000001472.18_4	chr8	+	2595	18	FSM	ENSMUSG00000001472.18	ENSMUST00000108840.4	2582	18	-13	0	-13	0	multi-exon	TRUE	canonical	3	124	junction_17	99.4416940675849	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100548	124130545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129885
ENSMUSG00000001472.18_5	chr8	+	2581	18	FSM	ENSMUSG00000001472.18	ENSMUST00000212571.2	2649	18	68	0	-2	0	multi-exon	FALSE	canonical	3	129	junction_17	98.3685253625717	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100559	124130545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129888
ENSMUSG00000001472.18_84	chr8	+	2302	1	NIC	ENSMUSG00000001472.18	novel	2649	18	NA	NA	2175	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124128243	124130545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_124128200_124130500
ENSMUSG00000001473.8_0	chr18	+	1755	4	FSM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	1	2	1	-2	multi-exon	FALSE	canonical	3	606	junction_3	34.2928563989645	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCATCGGTCTCTTGAACT	NA	False	NA	10	True	AATAAA	-12	NA	67523787	67535817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_67523885_67524394_67524504_67526015_67526127_67534379
ENSMUSG00000001473.8_8	chr18	+	1253	1	ISM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	10778	2	9228	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCATCGGTCTCTTGAACT	NA	False	NA	10	True	AATAAA	-12	NA	67534564	67535817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_67534600_67535800
ENSMUSG00000001482.16_0	chr8	+	3112	12	FSM	ENSMUSG00000001482.16	ENSMUST00000065534.10	3127	12	7	8	-3	0	multi-exon	FALSE	canonical	3	130	junction_1	53.2429330273546	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124169731	124190001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ENSMUSG00000001482.16_13	chr8	+	3199	13	FSM	ENSMUSG00000001482.16	ENSMUST00000001522.10	3214	13	7	8	-3	0	multi-exon	FALSE	canonical	3	16	junction_1	97.6160278278567	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124169731	124190001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124169791_124172836_124172924_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ENSMUSG00000001482.16_33	chr8	+	3161	12	FSM	ENSMUSG00000001482.16	ENSMUST00000108830.2	3191	12	30	0	30	0	multi-exon	FALSE	canonical	3	18	junction_1	79.5842502795747	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124170076	124190001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124170185_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ENSMUSG00000001482.16_41	chr8	+	3165	12	NIC	ENSMUSG00000001482.16	novel	589	4	NA	NA	103	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	80.3485177058087	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124173780	124190001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_124173893_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ENSMUSG00000001482.16_47	chr8	+	3056	11	ISM	ENSMUSG00000001482.16	ENSMUST00000108830.2	3191	12	4477	0	603	0	3prime_fragment	FALSE	canonical	3	200	junction_1	38.8612917953071	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124174523	124190001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ENSMUSG00000001482.16_5	chr8	+	3246	14	FSM	ENSMUSG00000001482.16	ENSMUST00000108832.8	3242	14	-12	8	-3	0	multi-exon	FALSE	canonical	3	15	junction_2	108.849605816422	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124169731	124190001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124169791_124172836_124172924_124174055_124174103_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ENSMUSG00000001482.16_54	chr8	+	2634	8	ISM	ENSMUSG00000001482.16	ENSMUST00000108830.2	3191	12	10967	0	7093	0	3prime_fragment	FALSE	canonical	3	222	junction_7	30.6121224487347	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124181013	124190001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ENSMUSG00000001504.11_0	chr13	+	2618	5	FSM	ENSMUSG00000001504.11	ENSMUST00000074372.6	2625	5	0	7	0	-7	multi-exon	FALSE	canonical	3	12	junction_3	5.35607132140714	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTCTGCTTTTCATCTT	NA	False	NA	NA	False	AATAAA	-11	NA	72776938	72782310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_72777433_72778689_72779096_72779375_72780090_72780704_72780781_72781382
ENSMUSG00000001504.11_2	chr13	+	3818	3	ISM	ENSMUSG00000001504.11	ENSMUST00000074372.6	2625	5	17	7	17	-7	intron_retention	FALSE	canonical	3	13	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTCTGCTTTTCATCTT	NA	False	NA	NA	False	AATAAA	-11	NA	72776955	72782310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_72777433_72778689_72779096_72779375
ENSMUSG00000001506.11_0	chr11	+	1425	6	ISM	ENSMUSG00000001506.11	ENSMUST00000001547.8	5930	51	13365	1155	4221	-1155	3prime_fragment	FALSE	canonical	0	0	junction_1	16.4	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGGAAGCTTGGTCCT	NA	False	NA	NA	False	NA	NA	NA	94840414	94842713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94840600_94840922_94841031_94841116_94841400_94841534_94841726_94841926_94842170_94842298
ENSMUSG00000001506.11_1	chr11	+	1322	5	ISM	ENSMUSG00000001506.11	ENSMUST00000001547.8	5930	51	13791	1155	4647	-1155	3prime_fragment	FALSE	canonical	2	4	junction_1	14.6180539060437	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGGAAGCTTGGTCCT	NA	False	NA	NA	False	NA	NA	NA	94840840	94842713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94841031_94841116_94841400_94841534_94841726_94841926_94842170_94842298
ENSMUSG00000001506.11_2	chr11	+	2078	4	ISM	ENSMUSG00000001506.11	ENSMUST00000001547.8	5930	51	14259	17	5115	-17	3prime_fragment	FALSE	canonical	3	18	junction_2	9.67241208569794	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAAATGACCCAATGC	NA	False	NA	NA	False	AATAAA	-3	NA	94841308	94843851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94841400_94841534_94841726_94841926_94842170_94842298
ENSMUSG00000001506.11_3	chr11	+	628	2	ISM	ENSMUSG00000001506.11	ENSMUST00000001547.8	5930	51	14867	1195	5723	-1195	3prime_fragment	FALSE	canonical	3	39	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94841916	94842673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94842170_94842298
ENSMUSG00000001507.17_0	chr11	-	1733	5	ISM	ENSMUSG00000001507.17	ENSMUST00000107739.8	4636	25	16677	2	3674	-2	3prime_fragment	FALSE	canonical	3	58	junction_1	1.87082869338697	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGTGTCTGCTCCTAC	8348	False	NA	-2	True	AATAAA	-20	NA	94943347	94935301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269
ENSMUSG00000001507.17_1	chr11	-	4859	27	NNC	ENSMUSG00000001507.17	novel	4861	26	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	14.1509194298483	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTGTGTCTGCTCCTA	8775	False	NA	-3	True	AATAAA	-19	NA	94967637	94935302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588_94956839_94959050_94959131_94959537_94959666_94966956_94967498_94967593
ENSMUSG00000001507.17_13	chr11	-	3955	23	ISM	ENSMUSG00000001507.17	ENSMUST00000107739.8	4636	25	3298	2	3298	-2	3prime_fragment	FALSE	canonical	3	46	junction_7	7.24668633307095	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGTGTCTGCTCCTAC	NA	False	NA	-2	True	AATAAA	-20	NA	94956726	94935301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588
ENSMUSG00000001507.17_16	chr11	-	4907	26	NNC	ENSMUSG00000001507.17	novel	4861	26	NA	NA	6	-3	intron_retention	FALSE	canonical	1	1	junction_1	14.2422470137265	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTGTGTCTGCTCCTA	8795	False	NA	-3	True	AATAAA	-19	NA	94967617	94935302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_94936590_94937302_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588_94956839_94959050_94959131_94959537_94959666_94966956
ENSMUSG00000001507.17_18	chr11	-	2564	12	ISM	ENSMUSG00000001507.17	ENSMUST00000107739.8	4636	25	12337	4	-666	-4	3prime_fragment	FALSE	canonical	3	46	junction_7	6.19383858068939	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTGCTGTGTCTGCTCCT	4008	False	NA	-4	True	AATAAA	-18	NA	94947687	94935303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529
ENSMUSG00000001507.17_2	chr11	-	4319	26	NIC	ENSMUSG00000001507.17	novel	4861	26	NA	NA	-10	-2	combination_of_known_junctions	FALSE	canonical	2	3	junction_25	13.9057398221022	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGTGTCTGCTCCTAC	8775	False	NA	-2	True	AATAAA	-20	NA	94967637	94935301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588_94956839_94959050_94959131_94959537_94959666_94967593
ENSMUSG00000001507.17_5	chr11	-	4883	26	FSM	ENSMUSG00000001507.17	ENSMUST00000001548.14	4861	26	-27	5	-27	-5	multi-exon	FALSE	canonical	3	46	junction_7	7.12179752590594	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTGCTGTGTCTGCTCC	8845	False	NA	-5	True	AATAAA	-17	NA	94967567	94935304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588_94956839_94959050_94959131_94959537_94959666_94966956
ENSMUSG00000001507.17_9	chr11	-	3257	19	ISM	ENSMUSG00000001507.17	ENSMUST00000107739.8	4636	25	9396	2	2469	-2	3prime_fragment	FALSE	canonical	3	46	junction_7	6.32675096536744	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGTGTCTGCTCCTAC	1067	False	NA	-2	True	AATAAA	-20	NA	94950628	94935301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604
ENSMUSG00000001510.9_0	chr11	+	2574	3	FSM	ENSMUSG00000001510.9	ENSMUST00000092768.7	2607	3	0	33	0	-33	multi-exon	FALSE	canonical	1	1	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATTAAAAAAAAAGAAG	467	False	NA	NA	False	NA	NA	NA	95010944	95016089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95011473_95012533_95012725_95014234
ENSMUSG00000001517.15_0	chr6	+	4387	8	FSM	ENSMUSG00000001517.15	ENSMUST00000073316.13	4652	8	-1	266	-1	-266	multi-exon	FALSE	canonical	3	86	junction_6	39.2423136890967	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTACCTCGTACACAGCC	NA	False	NA	2	True	TATAAA	-15	NA	128339928	128352843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_128340081_128342620_128343164_128344249_128344402_128346256_128346449_128347919_128348049_128348930_128348976_128349496_128349567_128349739
ENSMUSG00000001517.15_1	chr6	+	4333	7	NIC	ENSMUSG00000001517.15	novel	4652	8	NA	NA	7	-267	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	55.3132493671774	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTACCTCGTACACAGC	NA	False	NA	1	True	TATAAA	-14	NA	128339936	128352842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_128340081_128342620_128343164_128344249_128344402_128346256_128346449_128347919_128348049_128349496_128349567_128349739
ENSMUSG00000001517.15_2	chr6	+	6151	5	ISM	ENSMUSG00000001517.15	ENSMUST00000073316.13	4652	8	-188	265	-188	-265	intron_retention	FALSE	canonical	3	167	junction_1	12.031209415516	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACCTCGTACACAGCCT	NA	False	NA	3	True	TATAAA	-16	NA	128339741	128352844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_128340081_128342620_128343164_128344249_128344402_128346256_128346449_128347919
ENSMUSG00000001517.15_3	chr6	+	4381	8	NIC	ENSMUSG00000001517.15	novel	4652	8	NA	NA	5	-269	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	60.3665673115475	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATGTACCTCGTACACA	NA	False	NA	-1	True	TATAAA	-12	NA	128339934	128352840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_128340081_128342620_128343164_128344249_128344402_128346256_128346449_128347919_128348049_128348930_128348976_128349493_128349567_128349739
ENSMUSG00000001517.15_30	chr6	+	2175	1	ISM	ENSMUSG00000001517.15	ENSMUST00000073316.13	4652	8	10738	267	2746	-267	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTACCTCGTACACAGC	NA	False	NA	1	True	TATAAA	-14	NA	128350667	128352842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_128350700_128352800
ENSMUSG00000001517.15_4	chr6	+	4352	7	NIC	ENSMUSG00000001517.15	novel	4652	8	NA	NA	-9	-267	combination_of_known_junctions	FALSE	canonical	3	5	junction_5	67.396834742689	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTACCTCGTACACAGC	NA	False	NA	1	True	TATAAA	-14	NA	128339920	128352842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_128340081_128342620_128343164_128344249_128344402_128346256_128346449_128347919_128348049_128349493_128349567_128349739
ENSMUSG00000001518.13_1	chr6	-	2276	12	FSM	ENSMUSG00000001518.13	ENSMUST00000001559.11	2320	12	34	10	15	-10	multi-exon	FALSE	canonical	3	237	junction_3	19.6628609101919	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATCTGATGCAGCTCTC	NA	False	NA	-10	True	AATAAA	-14	NA	128401860	128386416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
ENSMUSG00000001518.13_11	chr6	-	2115	11	NIC	ENSMUSG00000001518.13	novel	2320	12	NA	NA	16	-1	intron_retention	FALSE	canonical	3	13	junction_8	79.0465685529739	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGCTCTCCAATCTGGA	NA	False	NA	-1	True	AATAAA	-23	NA	128401859	128386407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128393219_128393262_128394579_128394676_128401680
ENSMUSG00000001518.13_5	chr6	-	2365	11	NIC	ENSMUSG00000001518.13	novel	2320	12	NA	NA	8	-3	intron_retention	FALSE	canonical	3	237	junction_2	19.4216374180963	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGCAGCTCTCCAATCTG	NA	False	NA	-3	True	AATAAA	-21	NA	128401867	128386409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
ENSMUSG00000001521.13_15	chr6	-	169	1	ISM	ENSMUSG00000001521.13	ENSMUST00000138313.6	2630	4	23976	1	-6318	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128308828	128308659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_128308700_128308800
ENSMUSG00000001521.13_2	chr6	-	1467	1	ISM	ENSMUSG00000001521.13	ENSMUST00000001562.9	3374	11	33219	5	2915	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGTCGCTTTCCCAGA	1239	False	NA	-25	True	AATAAA	-13	NA	128299595	128298128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_128298100_128299600
ENSMUSG00000001521.13_4	chr6	-	2583	6	ISM	ENSMUSG00000001521.13	ENSMUST00000001562.9	3374	11	28292	-12	-2012	12	3prime_fragment	FALSE	canonical	3	32	junction_5	5.57135531087365	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATACCATCCCTTGGGTT	NA	False	NA	-8	True	AATAAA	-30	NA	128304522	128298111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_128300176_128300960_128301133_128301942_128302042_128302839_128302955_128303734_128303848_128304502
ENSMUSG00000001521.13_5	chr6	-	3341	11	FSM	ENSMUSG00000001521.13	ENSMUST00000001562.9	3374	11	28	5	2	-5	multi-exon	FALSE	canonical	3	32	junction_5	4.7169905660283	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGTCGCTTTCCCAGA	7519	False	NA	-25	True	AATAAA	-13	NA	128332786	128298128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_128300176_128300960_128301133_128301942_128302042_128302839_128302955_128303734_128303848_128304502_128304701_128304918_128305041_128310795_128310973_128311400_128311561_128314696_128314749_128332700
ENSMUSG00000001524.15_0	chr17	-	1643	14	FSM	ENSMUSG00000001524.15	ENSMUST00000001565.15	1679	14	25	11	-11	0	multi-exon	FALSE	canonical	3	142	junction_8	17.8418429806661	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAATCTACGCGGCT	NA	False	NA	-12	True	AATAAA	-6	NA	35984606	35978632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
ENSMUSG00000001525.11_2	chr17	-	1689	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	74	886	-15	798	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	12217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTCTCCTTTCTCTTTCC	NA	False	NA	-34	True	NA	NA	NA	36149124	36145698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
ENSMUSG00000001525.11_3	chr17	-	1780	1	ISM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	2582	24	1336	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	523	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAAATGGGAATTGGA	NA	False	NA	-31	True	NA	NA	NA	36146616	36144836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_36144800_36146600
ENSMUSG00000001542.8_1	chr13	+	3604	12	FSM	ENSMUSG00000001542.8	ENSMUST00000001583.8	4382	12	766	12	-62	-12	multi-exon	FALSE	canonical	3	343	junction_2	37.9194448472108	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCCAAAAATAAGTGAATAA	6218	False	NA	NA	False	AATAAA	-17	NA	75855641	75920471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_75855917_75873071_75873120_75894410_75894533_75898043_75898208_75904393_75904654_75909996_75910122_75910263_75910349_75911666_75912235_75914272_75914340_75917657_75917830_75918664_75918710_75918798
ENSMUSG00000001542.8_6	chr13	+	3458	11	NIC	ENSMUSG00000001542.8	novel	4382	12	NA	NA	-80	-12	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	126.162434979672	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCCAAAAATAAGTGAATAA	6200	False	NA	NA	False	AATAAA	-17	NA	75855623	75920471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_75855917_75873071_75873120_75894410_75894533_75904393_75904654_75909996_75910122_75910263_75910349_75911666_75912235_75914272_75914340_75917657_75917830_75918664_75918710_75918798
ENSMUSG00000001552.15_1	chr11	-	3212	14	FSM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	-13	6	1	-6	multi-exon	FALSE	canonical	3	399	junction_13	65.0294425807792	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAATGGAGGCTGTTAAA	NA	False	NA	-23	True	AATAAA	-12	NA	100288588	100261450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288461
ENSMUSG00000001552.15_2	chr11	-	3203	14	NIC	ENSMUSG00000001552.15	novel	3205	14	NA	NA	128	-6	combination_of_known_junctions	FALSE	canonical	3	19	junction_13	142.103221088711	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAATGGAGGCTGTTAAA	NA	False	NA	-23	True	AATAAA	-12	NA	100277439	100261450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100277321
ENSMUSG00000001552.15_3	chr11	-	1708	6	ISM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	20623	6	-3001	-6	3prime_fragment	FALSE	canonical	3	472	junction_4	54.0014814611599	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAATGGAGGCTGTTAAA	6787	False	NA	-23	True	AATAAA	-12	NA	100267952	100261450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548
ENSMUSG00000001552.15_9	chr11	-	3230	14	NIC	ENSMUSG00000001552.15	novel	3205	14	NA	NA	0	-4	combination_of_known_splicesites	FALSE	canonical	3	19	junction_13	142.103221088711	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATGGAGGCTGTTAAAAG	NA	False	NA	-21	True	AATAAA	-14	NA	100288589	100261448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288446
ENSMUSG00000001555.11_0	chr11	+	2559	10	FSM	ENSMUSG00000001555.11	ENSMUST00000001595.10	2584	10	26	-1	26	1	multi-exon	FALSE	canonical	3	18	junction_4	6.35959467611297	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTCCAGAAGTGGACAGAT	NA	False	NA	14	True	AATAAA	-15	NA	100306548	100315651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100306852_100311225_100311372_100311716_100311907_100312019_100312166_100312469_100312660_100312769_100312916_100313451_100313645_100313910_100314054_100314261_100314426_100314713
ENSMUSG00000001555.11_1	chr11	+	2231	9	ISM	ENSMUSG00000001555.11	ENSMUST00000001595.10	2584	10	4723	4	-4	-4	3prime_fragment	FALSE	canonical	3	18	junction_3	6.35904867098845	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGACCTCCAGAAGTGGA	NA	False	NA	9	True	AATAAA	-10	NA	100311245	100315646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100311372_100311716_100311907_100312019_100312166_100312469_100312660_100312769_100312916_100313451_100313645_100313910_100314054_100314261_100314426_100314713
ENSMUSG00000001555.11_3	chr11	+	1646	6	ISM	ENSMUSG00000001555.11	ENSMUST00000001595.10	2584	10	6079	-5	-1262	5	3prime_fragment	FALSE	canonical	3	22	junction_1	5.76194411635517	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGTGGACAGATGTCT	NA	False	NA	18	True	AATAAA	-19	NA	100312601	100315655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100312660_100312769_100312916_100313451_100313645_100313910_100314054_100314261_100314426_100314713
ENSMUSG00000001555.11_5	chr11	+	1544	5	ISM	ENSMUSG00000001555.11	ENSMUST00000001595.10	2584	10	6293	-7	-1048	7	3prime_fragment	FALSE	canonical	3	27	junction_1	4.63680924774785	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTGGACAGATGTCTGG	NA	False	NA	20	True	AATAAA	-21	NA	100312815	100315657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100312916_100313451_100313645_100313910_100314054_100314261_100314426_100314713
ENSMUSG00000001558.6_0	chr11	+	1262	4	NNC	ENSMUSG00000001558.6	novel	2017	5	NA	NA	-788	-44	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	6.59966329107444	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAATTAATTCTTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	100331954	100347804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_100332042_100337946_100338565_100347109_100347260_100347397
ENSMUSG00000001558.6_3	chr11	+	913	3	ISM	ENSMUSG00000001558.6	ENSMUST00000001599.4	2017	5	5466	44	5456	-44	3prime_fragment	FALSE	canonical	3	30	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAATTAATTCTTTTT	3798	False	NA	NA	False	AATAAA	-11	NA	100338208	100347804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100338565_100347109_100347260_100347397
ENSMUSG00000001566.10_0	chr5	-	2092	3	FSM	ENSMUSG00000001566.10	ENSMUST00000165512.4	2245	3	-141	294	-141	-67	multi-exon	FALSE	canonical	2	3	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTATGCATGCTAAATTAT	NA	False	NA	NA	False	TATAAA	-14	NA	29683609	29678325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_29679230_29679753_29679915_29682582
ENSMUSG00000001569.11_0	chr5	+	2810	11	FSM	ENSMUSG00000001569.11	ENSMUST00000001611.11	9219	11	42	6367	42	5121	multi-exon	FALSE	canonical	3	157	junction_8	15.8962259671911	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATGGTGGCACGTGTCT	3001	False	NA	5	True	TTTAAA	-7	NA	29639703	29656474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29645148_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
ENSMUSG00000001569.11_3	chr5	+	2547	11	NNC	ENSMUSG00000001569.11	novel	9219	11	NA	NA	43	5122	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	52.8295371927485	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGTGGCACGTGTCTT	3002	False	NA	6	True	TTTAAA	-8	NA	29639704	29656475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29644885_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
ENSMUSG00000001576.16_1	chr17	+	2464	10	FSM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	38	252	9	-252	multi-exon	FALSE	canonical	3	380	junction_9	34.0783411176855	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTAAGAAACCAGTCCCT	NA	False	NA	NA	False	TTTAAA	-14	NA	26780500	26875653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
ENSMUSG00000001576.16_16	chr17	+	422	1	ISM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	95019	2	20485	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATATTGCTGTGACTCT	NA	False	NA	9	True	ATTAAA	-13	NA	26875481	26875903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_26875500_26875900
ENSMUSG00000001576.16_2	chr17	+	1265	11	NIC	ENSMUSG00000001576.16	novel	2754	10	NA	NA	7	1	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	172.153884649752	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCACGTGTCTCTTTCCCT	NA	False	NA	13	True	GATAAA	-15	NA	26780498	26874325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26873800_26873928_26874040
ENSMUSG00000001583.14_10	chr11	-	2681	13	ISM	ENSMUSG00000001583.14	ENSMUST00000001626.10	2778	14	218	76	196	-76	3prime_fragment	FALSE	canonical	3	9	junction_11	5.86598007345936	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCGGTATCTACCCTCTCC	9298	False	NA	-82	True	NA	NA	NA	69749338	69741906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69742542_69742623_69742720_69742800_69743112_69743638_69743719_69743942_69744108_69744406_69744502_69745783_69746058_69746345_69746630_69746736_69746893_69747203_69747396_69747518_69747590_69747737_69747952_69749230
ENSMUSG00000001583.14_13	chr11	-	1862	7	ISM	ENSMUSG00000001583.14	ENSMUST00000001626.10	2778	14	3353	16	225	-16	3prime_fragment	FALSE	canonical	3	13	junction_4	5.84997625826141	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATGAGTACAACATACAA	NA	False	NA	-22	True	AAAAAG	-11	NA	69746203	69741846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69742542_69742623_69742720_69742800_69743112_69743638_69743719_69743942_69744108_69744406_69744502_69745783
ENSMUSG00000001583.14_4	chr11	-	3313	5	ISM	ENSMUSG00000001583.14	ENSMUST00000108628.8	2450	12	1892	-212	369	-2	intron_retention	FALSE	canonical	3	13	junction_4	6.97764286847643	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAAGACACAGCCTCCT	NA	False	NA	-8	True	AAAAAG	-25	NA	69746059	69741832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69742542_69742623_69742720_69742800_69743112_69743638_69743719_69743942
ENSMUSG00000001583.14_7	chr11	-	2722	14	FSM	ENSMUSG00000001583.14	ENSMUST00000001626.10	2778	14	-32	88	-32	-88	multi-exon	FALSE	canonical	3	9	junction_11	5.7316726185222	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGTGTTATCCGGTA	9048	False	NA	-94	True	NA	NA	NA	69749588	69741918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69742542_69742623_69742720_69742800_69743112_69743638_69743719_69743942_69744108_69744406_69744502_69745783_69746058_69746345_69746630_69746736_69746893_69747203_69747396_69747518_69747590_69747737_69747952_69749230_69749336_69749532
ENSMUSG00000001588.13_0	chr11	-	2464	22	FSM	ENSMUSG00000001588.13	ENSMUST00000001631.7	2482	22	18	0	18	0	multi-exon	FALSE	canonical	3	20	junction_20	9.40183800238705	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTCTTAGTTCATTTA	9591	False	NA	-6	True	ATTAAA	-15	NA	69786347	69772392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781009_69781259_69781319_69781414_69781469_69781689_69781810_69785425_69785484_69786111
ENSMUSG00000001588.13_22	chr11	-	1844	16	ISM	ENSMUSG00000001588.13	ENSMUST00000001631.7	2482	22	4554	1915	-494	1	internal_fragment	FALSE	canonical	3	29	junction_13	7.85592486952081	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGAGGTGGTGAATTAG	NA	False	NA	NA	False	GATAAA	-28	NA	69781811	69774307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781009_69781259_69781319_69781414_69781469_69781689
ENSMUSG00000001588.13_27	chr11	-	2768	19	NIC	ENSMUSG00000001588.13	novel	2482	22	NA	NA	-840	-1	intron_retention	FALSE	canonical	3	32	junction_13	6.62673224499931	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTCTTAGTTCATTT	NA	False	NA	-7	True	ATTAAA	-14	NA	69782157	69772393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781319_69781414_69781469_69781689
ENSMUSG00000001588.13_3	chr11	-	2231	20	ISM	ENSMUSG00000001588.13	ENSMUST00000001631.7	2482	22	4495	0	-553	0	3prime_fragment	TRUE	canonical	3	29	junction_17	7.4342920349514	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTCTTAGTTCATTTA	NA	False	NA	-6	True	ATTAAA	-15	NA	69781870	69772392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781009_69781259_69781319_69781414_69781469_69781689
ENSMUSG00000001588.13_5	chr11	-	2290	21	NNC	ENSMUSG00000001588.13	novel	2482	22	NA	NA	-748	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_20	11.7918403991913	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTCTTAGTTCATTTA	NA	False	NA	-6	True	ATTAAA	-15	NA	69782065	69772392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781009_69781259_69781319_69781414_69781469_69781689_69781810_69781945
ENSMUSG00000001588.13_6	chr11	-	2722	21	NIC	ENSMUSG00000001588.13	novel	2482	22	NA	NA	11	0	intron_retention	FALSE	canonical	3	20	junction_19	9.10714005602198	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTCTTAGTTCATTTA	9584	False	NA	-6	True	ATTAAA	-15	NA	69786354	69772392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781319_69781414_69781469_69781689_69781810_69785425_69785484_69786111
ENSMUSG00000001588.13_8	chr11	-	3088	18	NIC	ENSMUSG00000001588.13	novel	2482	22	NA	NA	-632	0	intron_retention	FALSE	canonical	3	32	junction_12	6.72340332340214	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTCTTAGTTCATTTA	NA	False	NA	-6	True	ATTAAA	-15	NA	69781949	69772392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781319_69781414_69781469_69781689
ENSMUSG00000001604.15_0	chr4	+	1200	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	2	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	231.929816970565	429	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATAAATACAAATT	6626	False	NA	-14	True	NA	NA	NA	135975285	136002180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992237_135995315_135995475_135998543_135998691_136000954_136001027_136002090
ENSMUSG00000001604.15_10	chr4	+	1263	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	307.780457469281	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGACAGAAAATGCTGAG	6626	False	NA	7	True	AATAAA	-18	NA	135975285	136002201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_135975471_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992237_135995315_135995475_135998543_135998691_136000954_136001027_136002090
ENSMUSG00000001627.13_0	chr12	-	1809	12	FSM	ENSMUSG00000001627.13	ENSMUST00000001672.12	3378	12	5	1564	1	0	multi-exon	FALSE	canonical	3	551	junction_11	48.4295518005619	712	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTGTGTAGTGAGCAGA	NA	False	NA	-3	True	AATAAA	-21	NA	40273183	40253129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
ENSMUSG00000001630.14_0	chr6	+	2309	14	FSM	ENSMUSG00000001630.14	ENSMUST00000001675.14	4550	14	-18	2259	-18	-3	multi-exon	FALSE	canonical	3	136	junction_10	10.7620855417108	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTCTGATCAGTCAATG	NA	False	NA	8	True	ATTAAA	-18	NA	146626474	146678051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677091
ENSMUSG00000001630.14_2	chr6	+	2124	12	NIC	ENSMUSG00000001630.14	novel	4550	14	NA	NA	-30	-3	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	45.7221215244242	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTCTGATCAGTCAATG	NA	False	NA	8	True	ATTAAA	-18	NA	146626462	146678051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_146626546_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677091
ENSMUSG00000001630.14_22	chr6	+	2241	13	ISM	ENSMUSG00000001630.14	ENSMUST00000001675.14	4550	14	33463	2259	33146	-3	3prime_fragment	FALSE	canonical	3	136	junction_9	10.8816231428139	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTCTGATCAGTCAATG	2729	False	NA	8	True	ATTAAA	-18	NA	146659955	146678051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677091
ENSMUSG00000001630.14_34	chr6	+	2575	1	ISM	ENSMUSG00000001630.14	ENSMUST00000001675.14	4550	14	51233	10	50916	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAAGCTCTGTTGGTGGGG	NA	False	NA	5	True	AATAAA	-10	NA	146677725	146680300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_146677700_146680300
ENSMUSG00000001632.17_0	chr6	+	4798	13	NIC	ENSMUSG00000001632.17	novel	4773	14	NA	NA	2	-4	intron_retention	FALSE	canonical	3	111	junction_6	28.8800200061488	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGTCTATTTAGAA	289	False	NA	5	True	AATATA	-12	NA	113284154	113301798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113299048_113299373_113299529_113300943
ENSMUSG00000001632.17_1	chr6	+	4686	14	FSM	ENSMUSG00000001632.17	ENSMUST00000113122.8	4773	14	65	22	10	-6	multi-exon	FALSE	canonical	3	111	junction_6	28.9253272447006	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAATAAAGTCTATTTAG	297	False	NA	3	True	AATATA	-10	NA	113284162	113301796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
ENSMUSG00000001632.17_10	chr6	+	4704	14	FSM	ENSMUSG00000001632.17	ENSMUST00000204626.3	4381	14	-111	-212	10	-6	multi-exon	FALSE	canonical	3	36	junction_6	42.213040975537	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAATAAAGTCTATTTAG	297	False	NA	3	True	AATATA	-10	NA	113284162	113301796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294656_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
ENSMUSG00000001632.17_19	chr6	+	4471	14	NIC	ENSMUSG00000001632.17	novel	4381	14	NA	NA	11	-6	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	49.1722007382605	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAATAAAGTCTATTTAG	298	False	NA	3	True	AATATA	-10	NA	113284163	113301796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113284299_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294656_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
ENSMUSG00000001632.17_2	chr6	+	4697	14	NIC	ENSMUSG00000001632.17	novel	4773	14	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	3	30	junction_7	44.7021702344376	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAATAAAGTCTATTTAG	289	False	NA	3	True	AATATA	-10	NA	113284154	113301796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113295998_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
ENSMUSG00000001632.17_3	chr6	+	4566	13	FSM	ENSMUSG00000001632.17	ENSMUST00000113117.4	4540	13	-30	4	2	-4	multi-exon	FALSE	canonical	3	53	junction_1	40.0779622181013	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGTCTATTTAGAA	289	False	NA	5	True	AATATA	-12	NA	113284154	113301798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113284299_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113299048_113299373_113299529_113300943
ENSMUSG00000001632.17_4	chr6	+	4809	13	FSM	ENSMUSG00000001632.17	ENSMUST00000203577.2	4468	13	-230	-111	7	-6	multi-exon	FALSE	canonical	3	36	junction_6	43.4117079701881	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAATAAAGTCTATTTAG	294	False	NA	3	True	AATATA	-10	NA	113284159	113301796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294656_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113299048_113299373_113299529_113300943
ENSMUSG00000001632.17_5	chr6	+	4733	14	FSM	ENSMUSG00000001632.17	ENSMUST00000113121.8	4603	14	-14	-116	12	-4	multi-exon	FALSE	canonical	3	30	junction_7	53.3804032920444	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGTCTATTTAGAA	273	False	NA	5	True	AATATA	-12	NA	113284138	113301798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294656_113295372_113295683_113295998_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
ENSMUSG00000001632.17_7	chr6	+	4454	14	NIC	ENSMUSG00000001632.17	novel	4773	14	NA	NA	10	-6	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	39.0967545074748	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAATAAAGTCTATTTAG	297	False	NA	3	True	AATATA	-10	NA	113284162	113301796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113284299_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
ENSMUSG00000001642.19_0	chr6	-	1349	10	FSM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	36	2	-1	-2	multi-exon	FALSE	canonical	3	629	junction_4	199.673498924718	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGGTGGTGGTCCGTTT	NA	False	NA	-7	True	AATAAA	-14	NA	34294377	34280870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574_34289743_34294274
ENSMUSG00000001642.19_3	chr6	-	1222	9	ISM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	4695	2	4647	-2	3prime_fragment	FALSE	canonical	3	629	junction_4	202.05502808641	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGGTGGTGGTCCGTTT	191	False	NA	-7	True	AATAAA	-14	NA	34289718	34280870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574
ENSMUSG00000001655.7_0	chr15	+	2458	2	FSM	ENSMUSG00000001655.7	ENSMUST00000001700.7	2461	2	0	3	0	-3	multi-exon	FALSE	canonical	3	47	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTATTGCTTGGGATC	NA	False	NA	14	True	AATAAA	-22	NA	102829537	102837246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102830353_102835603
ENSMUSG00000001663.11_0	chr10	-	1028	5	FSM	ENSMUSG00000001663.11	ENSMUST00000001713.10	1037	5	6	3	6	-3	multi-exon	FALSE	canonical	1	1	junction_4	2.87228132326901	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTTCTCCGTGTTGTTTC	9582	False	NA	NA	False	AATAAA	-21	NA	75634412	75619649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75620068_75622628_75622806_75629910_75630062_75632876_75632965_75634218
ENSMUSG00000001665.12_0	chr10	-	1544	5	FSM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	323	13	-41	-13	multi-exon	FALSE	canonical	3	19	junction_4	2.34520787991171	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAAGAGTAATGGTTTT	NA	False	NA	-8	True	AATAAA	-10	NA	75616925	75609961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75610845_75611704_75611882_75612577_75612729_75613934_75614023_75616680
ENSMUSG00000001665.12_1	chr10	-	244	1	ISM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	7048	8	2498	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTAATGGTTTTGCTTC	NA	False	NA	-3	True	AATAAA	-15	NA	75610200	75609956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75610000_75610200
ENSMUSG00000001665.12_2	chr10	-	2016	5	NIC	ENSMUSG00000001665.12	novel	687	6	NA	NA	-21	-8	intron_retention	FALSE	canonical	0	0	junction_1	9.51314879522022	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTAATGGTTTTGCTTC	NA	False	NA	-3	True	AATAAA	-15	NA	75616905	75609956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_75611332_75611704_75611882_75612577_75612729_75613934_75614023_75616680
ENSMUSG00000001666.9_0	chr10	-	614	3	FSM	ENSMUSG00000001666.9	ENSMUST00000001716.8	649	3	35	0	35	0	multi-exon	FALSE	canonical	3	462	junction_2	12	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGACTTCTTTGCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	75609213	75607066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75607341_75608571_75608748_75609049
ENSMUSG00000001672.15_0	chr8	-	2440	3	FSM	ENSMUSG00000001672.15	ENSMUST00000051430.7	2447	3	1	6	1	-6	multi-exon	FALSE	canonical	0	0	junction_2	1	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGACATCCTTGCCTTG	NA	False	NA	NA	False	AATAAA	-11	NA	110688834	110679548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_110681374_110686344_110686473_110688347
ENSMUSG00000001672.15_2	chr8	-	1307	3	FSM	ENSMUSG00000001672.15	ENSMUST00000001722.14	1330	3	30	-7	30	7	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAGTCTGCTGGACCACT	NA	False	NA	NA	False	AGTAAA	-17	NA	110688770	110674538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_110675295_110686344_110686473_110688347
ENSMUSG00000001674.12_0	chr1	-	2194	13	FSM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	57	7	57	-7	multi-exon	FALSE	canonical	3	390	junction_12	122.318232492135	967	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAATGTTTTTTATACC	NA	False	NA	-23	True	CATAAA	-16	NA	121495661	121481570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
ENSMUSG00000001687.16_0	chr5	-	2523	5	FSM	ENSMUSG00000001687.16	ENSMUST00000079324.14	2537	5	-18	32	-18	-32	multi-exon	FALSE	canonical	3	361	junction_2	34.1641259217911	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACTAAATAAAAAAAAAAA	NA	False	NA	-36	True	AATAGA	-11	NA	148489490	148441476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762
ENSMUSG00000001687.16_1	chr5	-	2528	6	FSM	ENSMUSG00000001687.16	ENSMUST00000201595.4	2064	6	-2	-462	-2	-32	multi-exon	FALSE	canonical	3	120	junction_5	118.120954957196	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACTAAATAAAAAAAAAAA	NA	False	NA	-36	True	AATAGA	-11	NA	148489601	148441476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762_148488861_148488966
ENSMUSG00000001700.11_0	chr18	+	2368	14	FSM	ENSMUSG00000001700.11	ENSMUST00000070166.6	2605	14	9	228	9	0	multi-exon	FALSE	canonical	1	2	junction_2	2.64910390118809	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCAGTATGGGTTGGCT	2620	False	NA	NA	False	AATAAA	-27	NA	56565212	56636636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_56565430_56602604_56602725_56607090_56607203_56609674_56609742_56611920_56612025_56615692_56615789_56618283_56618356_56618447_56618529_56621822_56621935_56622686_56622810_56623742_56623831_56624966_56625072_56630391_56630486_56635659
ENSMUSG00000001707.9_0	chr13	-	1012	4	FSM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	50	1491	2	-1491	multi-exon	FALSE	canonical	3	1400	junction_3	42.6640624205223	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCAACTTTTGTTTGT	NA	False	NA	-10	True	AGTAAA	-10	NA	38842984	38829673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_38830287_38838971_38839068_38840015_38840217_38842882
ENSMUSG00000001707.9_6	chr13	-	531	2	FSM	ENSMUSG00000001707.9	ENSMUST00000224487.2	533	2	2	0	2	0	multi-exon	FALSE	canonical	3	1400	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTAACAAGAGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	38842984	38839787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_38840217_38842882
ENSMUSG00000001729.15_2	chr12	-	2657	14	FSM	ENSMUSG00000001729.15	ENSMUST00000001780.10	2690	14	26	7	26	-7	multi-exon	TRUE	canonical	3	224	junction_13	42.5045768506691	635	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTGTGGTTTGCTTTCT	NA	False	NA	-7	True	AATAAA	-12	NA	112640684	112620261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_112621212_112621560_112621664_112622935_112623024_112623210_112623426_112623501_112623631_112623701_112623828_112624100_112624170_112624831_112624898_112624979_112625112_112625562_112625711_112625983_112626096_112628613_112628743_112637949_112638089_112640433
ENSMUSG00000001750.17_2	chr19	-	2629	20	FSM	ENSMUSG00000001750.17	ENSMUST00000001801.11	2688	20	57	2	-36	-2	multi-exon	FALSE	canonical	3	39	junction_12	8.58007741992203	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTGTCTCTGTCCTCTC	NA	False	NA	-2	True	AATAAA	-18	NA	3957076	3946051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952036_3952343_3952557_3952630_3952725_3952881_3952965_3953045_3953173_3953339_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
ENSMUSG00000001750.17_20	chr19	-	2934	19	NIC	ENSMUSG00000001750.17	novel	2688	20	NA	NA	-36	-5	intron_retention	FALSE	canonical	3	39	junction_11	8.71496513383448	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTTTGTCTCTGTCCT	NA	False	NA	-5	True	AATAAA	-15	NA	3957076	3946054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952557_3952630_3952725_3952881_3952965_3953045_3953173_3953339_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
ENSMUSG00000001750.17_6	chr19	-	3089	18	NIC	ENSMUSG00000001750.17	novel	2688	20	NA	NA	-21	-2	intron_retention	FALSE	canonical	3	39	junction_11	8.75502821418308	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTGTCTCTGTCCTCTC	NA	False	NA	-2	True	AATAAA	-18	NA	3957061	3946051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952557_3952630_3952725_3952881_3952965_3953045_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
ENSMUSG00000001750.17_7	chr19	-	2796	19	NIC	ENSMUSG00000001750.17	novel	2688	20	NA	NA	-36	-2	intron_retention	FALSE	canonical	3	39	junction_12	8.62740394124629	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTGTCTCTGTCCTCTC	NA	False	NA	-2	True	AATAAA	-18	NA	3957076	3946051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952036_3952343_3952557_3952630_3952725_3952881_3952965_3953045_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
ENSMUSG00000001751.10_0	chr11	+	2447	6	FSM	ENSMUSG00000001751.10	ENSMUST00000001802.10	2560	6	87	26	87	-26	multi-exon	FALSE	canonical	3	15	junction_1	1.93907194296653	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCACCTGGGCCTATTAC	NA	False	NA	-3	True	AATAAA	-7	NA	100960924	100968472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100961328_100961905_100962054_100962721_100962869_100963042_100963129_100964672_100964930_100967066
ENSMUSG00000001755.13_1	chr11	+	2052	10	FSM	ENSMUSG00000001755.13	ENSMUST00000001806.10	2138	10	85	1	25	-1	multi-exon	FALSE	canonical	3	106	junction_1	26.2908705931015	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGTGTGGTTTTCTGT	3596	False	NA	24	True	ATTAAA	-15	NA	100973475	100977444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100973517_100973824_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ENSMUSG00000001755.13_2	chr11	+	1370	9	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	48.4418143239908	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTTGTGTGGTTTTCTG	3569	False	NA	23	True	ATTAAA	-14	NA	100973448	100977443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_100973517_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ENSMUSG00000001755.13_3	chr11	+	2344	9	FSM	ENSMUSG00000001755.13	ENSMUST00000107308.4	2386	9	40	2	40	-2	multi-exon	FALSE	canonical	3	125	junction_1	20.9388992069784	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTTGTGTGGTTTTCTG	3611	False	NA	23	True	ATTAAA	-14	NA	100973490	100977443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ENSMUSG00000001755.13_5	chr11	+	2692	9	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	0	-2	intron_retention	FALSE	canonical	3	106	junction_1	25.4972424979644	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTTGTGTGGTTTTCTG	3564	False	NA	23	True	ATTAAA	-14	NA	100973443	100977443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_100973517_100973824_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ENSMUSG00000001755.13_9	chr11	+	2967	8	NIC	ENSMUSG00000001755.13	novel	2386	9	NA	NA	27	-1	intron_retention	FALSE	canonical	3	146	junction_2	16.9272151355413	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGTGTGGTTTTCTGT	3598	False	NA	24	True	ATTAAA	-15	NA	100973477	100977444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ENSMUSG00000001761.8_1	chr6	+	3825	12	FSM	ENSMUSG00000001761.8	ENSMUST00000001812.5	3779	12	-55	9	-55	-9	multi-exon	FALSE	canonical	3	65	junction_3	9.38347413151758	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGCTCATGCGTGTTTCT	-10	True	NA	NA	False	NA	NA	NA	29735637	29761355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29736353_29753468_29753675_29754320_29754531_29754690_29754864_29755172_29755393_29755481_29755606_29756779_29756873_29757255_29757365_29758334_29758521_29758864_29759014_29759482_29759618_29759850
ENSMUSG00000001761.8_17	chr6	+	1878	3	ISM	ENSMUSG00000001761.8	ENSMUST00000001812.5	3779	12	23083	9	23083	-9	3prime_fragment	FALSE	canonical	3	85	junction_1	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGCTCATGCGTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	29758775	29761355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_29759014_29759482_29759618_29759850
ENSMUSG00000001763.15_0	chr6	+	2016	8	FSM	ENSMUSG00000001763.15	ENSMUST00000115250.4	1977	8	-39	0	-27	0	multi-exon	FALSE	canonical	3	18	junction_2	7.38172039015075	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAGCTGTCCTACATCAA	5	True	NA	7	True	AATAAA	-16	NA	29694193	29718556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29694544_29709939_29709998_29710588_29710714_29711014_29711090_29713437_29713534_29716703_29716833_29717188_29717351_29717535
ENSMUSG00000001763.15_1	chr6	+	2014	8	FSM	ENSMUSG00000001763.15	ENSMUST00000046750.14	1994	8	-22	2	-22	0	multi-exon	FALSE	canonical	3	27	junction_2	5.15474815790535	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAGCTGTCCTACATCAA	10	False	NA	7	True	AATAAA	-16	NA	29694198	29718556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29694544_29709939_29709998_29710585_29710714_29711014_29711090_29713437_29713534_29716703_29716833_29717188_29717351_29717535
ENSMUSG00000001763.15_4	chr6	+	169	1	ISM	ENSMUSG00000001763.15	ENSMUST00000137925.2	3558	4	6625	1	6625	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	29714651	29714820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_29714700_29714800
ENSMUSG00000001767.6_0	chr2	-	2343	14	FSM	ENSMUSG00000001767.6	ENSMUST00000001818.5	3428	14	303	782	3	-782	multi-exon	FALSE	canonical	3	204	junction_8	24.6650940380394	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTGTTACTTGAGTCC	NA	False	NA	-16	True	AGTAAA	-14	NA	145776631	145760180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_145760521_145761659_145761909_145762516_145762619_145763691_145763932_145765763_145765845_145766634_145766695_145767427_145767620_145768695_145768867_145770040_145770220_145772453_145772621_145773189_145773349_145774165_145774258_145774732_145774886_145776473
ENSMUSG00000001768.17_1	chr2	+	4868	14	NIC	ENSMUSG00000001768.17	novel	1668	5	NA	NA	4	-7	combination_of_known_splicesites	TRUE	canonical	0	0	junction_3	3.96433806976158	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTCTTCAGTTGTCTTT	NA	False	NA	NA	False	AATACA	-42	NA	145517290	145729529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_145517505_145519003_145519100_145554374_145554499_145628241_145628335_145664184_145664286_145686630_145686824_145690684_145690797_145693098_145693172_145700360_145700453_145701933_145703095_145718310_145718617_145720763_145720896_145725241_145725406_145727522
ENSMUSG00000001768.17_10	chr2	+	2405	4	ISM	ENSMUSG00000001768.17	ENSMUST00000147976.8	4657	13	90469	17	13941	-17	3prime_fragment	FALSE	canonical	3	12	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTTTGCAATATTCTTC	NA	False	NA	NA	False	AATACA	-32	NA	145718504	145729519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_145718617_145720763_145720896_145725241_145725406_145727522
ENSMUSG00000001768.17_12	chr2	+	4721	14	NIC	ENSMUSG00000001768.17	novel	1668	5	NA	NA	127	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	4.12238800214593	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTCTTCAGTTGTCTTT	NA	False	NA	NA	False	AATACA	-42	NA	145517413	145729529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_145517505_145554374_145554499_145579302_145579375_145628241_145628335_145664184_145664286_145686630_145686824_145690684_145690797_145693098_145693172_145700360_145700453_145701933_145703095_145718310_145718617_145720763_145720896_145725241_145725406_145727522
ENSMUSG00000001768.17_4	chr2	+	4652	13	NIC	ENSMUSG00000001768.17	novel	1668	5	NA	NA	124	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	3.53847895759369	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTCTTCAGTTGTCTTT	NA	False	NA	NA	False	AATACA	-42	NA	145517410	145729529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_145517505_145554374_145554499_145628241_145628335_145664184_145664286_145686630_145686824_145690684_145690797_145693098_145693172_145700360_145700453_145701933_145703095_145718310_145718617_145720763_145720896_145725241_145725406_145727522
ENSMUSG00000001768.17_9	chr2	+	3117	5	ISM	ENSMUSG00000001768.17	ENSMUST00000147976.8	4657	13	74551	7	-1977	-7	3prime_fragment	FALSE	canonical	3	11	junction_1	0.707106781186548	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTCTTCAGTTGTCTTT	NA	False	NA	NA	False	AATACA	-42	NA	145702586	145729529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_145703095_145718310_145718617_145720763_145720896_145725241_145725406_145727522
ENSMUSG00000001774.9_0	chr9	+	2174	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	173	3442	-2	1987	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	1096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTTTCTGTCATGTGTT	8538	False	NA	11	True	NA	NA	NA	18203593	18225296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
ENSMUSG00000001774.9_53	chr9	+	2507	1	ISM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	21135	1676	8059	-1676	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTCTGAGTCCTGAGA	NA	False	NA	NA	False	ATTAAA	-11	NA	18224555	18227062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_18224600_18227100
ENSMUSG00000001783.4_0	chr10	-	1974	12	FSM	ENSMUSG00000001783.4	ENSMUST00000001834.4	2009	12	35	0	35	0	multi-exon	FALSE	canonical	3	1317	junction_1	96.7988457003782	1508	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	-12	True	ATTAAA	-17	NA	85793652	85774500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
ENSMUSG00000001785.14_0	chr10	+	2546	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	22	4	22	-4	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	458	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAAATTCACCTCACTTT	NA	False	NA	4	True	AATAAA	-15	NA	85707716	85724956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
ENSMUSG00000001786.15_1	chr10	+	1893	9	FSM	ENSMUSG00000001786.15	ENSMUST00000130320.8	5388	9	-52	3547	-52	3	multi-exon	TRUE	canonical	3	208	junction_3	24.7878498462452	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGACTTGACTTTTTTTAA	NA	False	NA	13	True	AGTAAA	-16	NA	85857783	85884190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_85858009_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUSG00000001786.15_13	chr10	+	1715	9	FSM	ENSMUSG00000001786.15	ENSMUST00000120344.8	1655	9	-60	0	-60	0	multi-exon	FALSE	canonical	3	21	junction_1	78.2747564672034	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85857992	85884187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_85858195_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUSG00000001786.15_22	chr10	+	1841	9	FSM	ENSMUSG00000001786.15	ENSMUST00000117597.2	1799	9	-42	0	-34	0	multi-exon	FALSE	canonical	3	31	junction_1	75.1232320923428	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858018	85884187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_85858195_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUSG00000001794.14_0	chr7	-	1427	11	FSM	ENSMUSG00000001794.14	ENSMUST00000126116.3	1429	11	-10	12	-10	-12	multi-exon	FALSE	canonical	3	766	junction_10	279.009032111866	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGAGCTCTATAGAGTA	NA	False	NA	7	True	NA	NA	NA	29894483	29886379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430
ENSMUSG00000001794.14_1	chr7	-	1226	9	FSM	ENSMUSG00000001794.14	ENSMUST00000207082.2	1241	9	-4	19	-4	-12	multi-exon	FALSE	canonical	3	1474	junction_7	82.1492544092763	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGAGCTCTATAGAGTA	NA	False	NA	7	True	NA	NA	NA	29892401	29886379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291
ENSMUSG00000001794.14_2	chr7	-	1283	10	ISM	ENSMUSG00000001794.14	ENSMUST00000126116.3	1429	11	1044	6	-223	-6	3prime_fragment	FALSE	canonical	3	1106	junction_9	168.3138602598	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCTATAGAGTAACTTGG	NA	False	NA	13	True	NA	NA	NA	29893429	29886373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302
ENSMUSG00000001794.14_25	chr7	-	1145	10	FSM	ENSMUSG00000001794.14	ENSMUST00000108196.8	1192	10	47	0	47	0	multi-exon	FALSE	canonical	3	41	junction_9	490.288577155219	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29892484	29886414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892454
ENSMUSG00000001794.14_4	chr7	-	1603	12	FSM	ENSMUSG00000001794.14	ENSMUST00000001845.13	1600	12	-16	13	-16	-12	multi-exon	FALSE	canonical	3	37	junction_11	486.143841584714	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGAGCTCTATAGAGTA	8293	False	NA	7	True	NA	NA	NA	29898252	29886379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430_29894590_29898182
ENSMUSG00000001802.17_0	chr7	-	3954	8	FSM	ENSMUSG00000001802.17	ENSMUST00000122409.8	4147	8	185	8	-21	-7	multi-exon	FALSE	canonical	3	19	junction_6	4.69041575982343	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCGGCTGTTCCA	NA	False	NA	NA	False	AATAAA	-9	NA	34914738	34900310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_34902095_34902353_34902487_34902692_34903807_34904105_34904321_34905461_34905601_34910859_34910923_34912564_34912613_34914280
ENSMUSG00000001802.17_1	chr7	-	4218	7	NIC	ENSMUSG00000001802.17	novel	4147	8	NA	NA	-73	-1	intron_retention	FALSE	canonical	3	19	junction_5	2.49443825784929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCGGCTGTTCCAGTCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	34914790	34900304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_34902095_34902353_34903807_34904105_34904321_34905461_34905601_34910859_34910923_34912564_34912613_34914280
ENSMUSG00000001802.17_11	chr7	-	1933	2	FSM	ENSMUSG00000001802.17	ENSMUST00000155404.3	2089	2	172	-16	-94	16	multi-exon	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACAAGGTCTCATTGTGTC	NA	False	NA	NA	False	AATAAA	-33	NA	34902478	34900286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_34902095_34902353
ENSMUSG00000001802.17_17	chr7	-	3888	7	FSM	ENSMUSG00000001802.17	ENSMUST00000118444.3	3877	7	-18	7	-18	-7	multi-exon	FALSE	canonical	3	5	junction_5	8.76387788342327	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCGGCTGTTCCA	NA	False	NA	NA	False	AATAAA	-9	NA	34914735	34900310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_34902095_34902353_34902487_34902692_34903807_34904105_34904321_34905461_34905601_34912564_34912613_34914280
ENSMUSG00000001802.17_2	chr7	-	6019	5	NIC	ENSMUSG00000001802.17	novel	4147	8	NA	NA	67	-1	intron_retention	FALSE	canonical	3	19	junction_4	2.17944947177034	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCGGCTGTTCCAGTCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	34914650	34900304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_34902095_34902353_34904321_34905461_34905601_34910859_34912613_34914280
ENSMUSG00000001802.17_3	chr7	-	4230	6	NIC	ENSMUSG00000001802.17	novel	3877	7	NA	NA	-57	-3	intron_retention	FALSE	canonical	3	5	junction_4	9.47417542586161	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATCGGCTGTTCCAGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	34914774	34900306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_34902095_34902353_34902487_34902692_34904321_34905461_34905601_34912564_34912613_34914280
ENSMUSG00000001802.17_4	chr7	-	5660	7	NIC	ENSMUSG00000001802.17	novel	4147	8	NA	NA	-85	-7	intron_retention	FALSE	canonical	3	19	junction_6	4.56131072780134	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCGGCTGTTCCA	NA	False	NA	NA	False	AATAAA	-9	NA	34914802	34900310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_34902095_34902353_34902487_34902692_34903807_34904105_34904321_34905461_34905601_34910859_34912613_34914280
ENSMUSG00000001802.17_8	chr7	-	4311	7	NIC	ENSMUSG00000001802.17	novel	4147	8	NA	NA	-79	-7	intron_retention	FALSE	canonical	3	19	junction_5	5.04700130990891	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCGGCTGTTCCA	NA	False	NA	NA	False	AATAAA	-9	NA	34914796	34900310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_34902095_34902353_34902487_34902692_34904321_34905461_34905601_34910859_34910923_34912564_34912613_34914280
ENSMUSG00000001819.5_0	chr2	+	2344	2	FSM	ENSMUSG00000001819.5	ENSMUST00000001872.5	2483	2	132	7	132	-7	multi-exon	FALSE	canonical	3	3	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTATCAATTTATTTGA	NA	False	NA	NA	False	AATAAA	-14	NA	74498785	74501936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_74499423_74500229
ENSMUSG00000001819.5_1	chr2	+	1489	1	ISM	ENSMUSG00000001819.5	ENSMUST00000001872.5	2483	2	1800	1	1800	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAATTTATTTGACATTTT	NA	False	NA	NA	False	AATAAA	-20	NA	74500453	74501942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_74500500_74501900
ENSMUSG00000001827.13_0	chr7	-	1070	6	NIC	ENSMUSG00000001827.13	novel	1286	7	NA	NA	2	-17	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	123.544971569061	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGCCTTATGAATTATTT	3227	False	NA	-17	True	AATAAA	-14	NA	101518223	101507554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518199
ENSMUSG00000001827.13_1	chr7	-	1118	5	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	2058	19	42	-19	3prime_fragment	FALSE	canonical	3	257	junction_4	35.4788669492136	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTGCCTTATGAATTAT	3618	False	NA	-19	True	AATAAA	-12	NA	101517832	101507556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604
ENSMUSG00000001827.13_11	chr7	-	1126	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106983.8	1307	7	1466	19	0	-19	3prime_fragment	FALSE	canonical	3	52	junction_5	108.542341968469	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTGCCTTATGAATTAT	2921	False	NA	-19	True	AATAAA	-12	NA	101518529	101507556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517675_101518363
ENSMUSG00000001827.13_3	chr7	-	1019	5	FSM	ENSMUSG00000001827.13	ENSMUST00000106982.8	1039	5	1	19	1	-19	multi-exon	FALSE	canonical	3	16	junction_4	136.80711787038	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTGCCTTATGAATTAT	4837	False	NA	-19	True	AATAAA	-12	NA	101516613	101507556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101516484
ENSMUSG00000001827.13_4	chr7	-	1200	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	1371	19	10	-19	3prime_fragment	FALSE	canonical	3	40	junction_5	113.141327550988	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTGCCTTATGAATTAT	2931	False	NA	-19	True	AATAAA	-12	NA	101518519	101507556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518363
ENSMUSG00000001827.13_5	chr7	-	1152	6	NIC	ENSMUSG00000001827.13	novel	1286	7	NA	NA	-21	-19	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	123.544971569061	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTGCCTTATGAATTAT	2898	False	NA	-19	True	AATAAA	-12	NA	101518552	101507556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517678_101518363
ENSMUSG00000001827.13_8	chr7	-	896	4	FSM	ENSMUSG00000001827.13	ENSMUST00000106981.8	960	4	45	19	45	-19	multi-exon	FALSE	canonical	3	303	junction_2	18.9267594221045	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTGCCTTATGAATTAT	8143	False	NA	-19	True	AATAAA	-12	NA	101513307	101507556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131
ENSMUSG00000001829.18_0	chr7	+	2147	16	FSM	ENSMUSG00000001829.18	ENSMUST00000001884.14	4627	16	120	2360	-4	-2	multi-exon	FALSE	canonical	3	662	junction_8	67.7342519622745	1196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAATCCACCTTGCCCTC	NA	False	NA	16	True	AATAAA	-22	NA	101312959	101437015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
ENSMUSG00000001833.18_1	chr9	+	2338	13	NIC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	-26	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	380.283474310064	1399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGAGTGCAGTGTCTTGT	NA	False	NA	15	True	AATAAA	-15	NA	25163917	25219860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
ENSMUSG00000001844.11_0	chr5	-	1536	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	1	3	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	94.7198995723707	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTTGTTTTCTCAT	5312	False	NA	-18	True	AATACA	-21	NA	143314968	143302248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314432_143314653_143314920
ENSMUSG00000001844.11_1	chr5	-	1322	8	FSM	ENSMUSG00000001844.11	ENSMUST00000001900.9	1364	8	37	5	1	3	multi-exon	FALSE	canonical	3	167	junction_7	40.248209492435	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTTGTTTTCTCAT	5306	False	NA	-18	True	AATACA	-21	NA	143314974	143302248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
ENSMUSG00000001844.11_15	chr5	-	1335	8	FSM	ENSMUSG00000001844.11	ENSMUST00000159813.8	1341	8	0	6	0	1	multi-exon	TRUE	canonical	3	40	junction_2	78.3753397284568	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGATATTTGTTTTCTC	5305	False	NA	-20	True	AATACA	-19	NA	143314975	143302250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143302588_143305985_143306231_143307509_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
ENSMUSG00000001844.11_2	chr5	-	1377	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-3	-2	combination_of_known_junctions	TRUE	canonical	3	22	junction_7	84.1580146425249	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATATTTGTTTTCTCATCA	5320	False	NA	-16	True	AATACA	-23	NA	143314960	143302246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314853
ENSMUSG00000001847.15_0	chr5	-	2260	6	FSM	ENSMUSG00000001847.15	ENSMUST00000080537.14	4159	6	45	1854	2	-6	multi-exon	FALSE	canonical	3	1143	junction_4	56.2444663944819	1191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATACAACTGGTTATGC	3468	False	NA	-15	True	AATAAA	-7	NA	143513746	143491242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143492861_143493081_143493242_143493850_143493914_143500423_143500542_143502912_143502985_143513517
ENSMUSG00000001855.16_1	chr2	+	6581	36	FSM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	18	6	18	0	multi-exon	TRUE	canonical	3	26	junction_30	27.3468425219141	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAACATCTGGGTATTTA	NA	False	NA	26	True	ATTAAA	-20	NA	31864465	31942377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134_31873239_31878165_31878273_31879084_31879152_31880246_31880374_31881275_31881438_31884534_31884989_31886387_31886564_31887964_31888063_31892603_31892691_31892892_31893043_31894324_31894484_31896700_31896805_31900194_31900378_31901023_31901098_31901196_31901281_31907037_31907350_31908206_31908369_31910269_31910370_31915254_31915331_31916859_31916939_31920718_31920810_31921261_31921321_31923214_31924982_31928113_31928185_31929334_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
ENSMUSG00000001855.16_2	chr2	+	4727	27	ISM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	7	20651	7	-2	intron_retention	FALSE	canonical	3	95	junction_11	15.0262098430882	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAATAATTTTTTTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	31864454	31921732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134_31873239_31878165_31878273_31879084_31879152_31880246_31880374_31881275_31881438_31884534_31884989_31886387_31886564_31887964_31888063_31892603_31892691_31892892_31893043_31894324_31894484_31896700_31896805_31900194_31900378_31901023_31901098_31901196_31901281_31907037_31907350_31908206_31908369_31910269_31910370_31915254_31915331_31916859_31916939_31920718
ENSMUSG00000001855.16_3	chr2	+	6577	36	NIC	ENSMUSG00000001855.16	novel	6605	36	NA	NA	-25	0	intron_retention	FALSE	canonical	3	95	junction_11	21.2761052136246	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAACATCTGGGTATTTA	NA	False	NA	26	True	ATTAAA	-20	NA	31864472	31942377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134_31873239_31878165_31878273_31879084_31879152_31880246_31880374_31881275_31881438_31884534_31884989_31886387_31886564_31887964_31888063_31892603_31892691_31892892_31893043_31894324_31894484_31896700_31896805_31900194_31900378_31901023_31901098_31901196_31901281_31907037_31907350_31908206_31908369_31910269_31910370_31915254_31915331_31916859_31916939_31920718_31920810_31921261_31921321_31923214_31924982_31928113_31928185_31929331_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
ENSMUSG00000001855.16_42	chr2	+	4204	20	NIC	ENSMUSG00000001855.16	novel	6605	36	NA	NA	-5945	0	intron_retention	FALSE	canonical	3	98	junction_5	24.892121816588	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAACATCTGGGTATTTA	7049	False	NA	26	True	ATTAAA	-20	NA	31894335	31942377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31894484_31896700_31896805_31900194_31900378_31901023_31901098_31901196_31901281_31907037_31907350_31908206_31908369_31910269_31910370_31915254_31915331_31916859_31916939_31920718_31920810_31921261_31921321_31923214_31924982_31928113_31928185_31929331_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
ENSMUSG00000001855.16_46	chr2	+	3890	18	NIC	ENSMUSG00000001855.16	novel	6605	36	NA	NA	-24	0	intron_retention	FALSE	canonical	3	98	junction_3	24.3626010963512	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAACATCTGGGTATTTA	NA	False	NA	26	True	ATTAAA	-20	NA	31900256	31942377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31900378_31901023_31901098_31901196_31901281_31907037_31907350_31908206_31908369_31910269_31910370_31915254_31915331_31916859_31916939_31920718_31920810_31921261_31921321_31923214_31924982_31928113_31928185_31929331_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
ENSMUSG00000001855.16_52	chr2	+	2485	8	ISM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	59013	4	-527	0	3prime_fragment	FALSE	canonical	3	26	junction_2	50.6597292063954	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACATCTGGGTATTTATT	NA	False	NA	28	True	ATTAAA	-22	NA	31923460	31942379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_31924982_31928113_31928185_31929334_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
ENSMUSG00000001855.16_53	chr2	+	2310	8	FSM	ENSMUSG00000001855.16	ENSMUST00000138012.2	3569	8	-351	1610	-351	0	multi-exon	FALSE	canonical	3	103	junction_2	26.8617017407342	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAACATCTGGGTATTTA	NA	False	NA	26	True	ATTAAA	-20	NA	31923636	31942377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31924982_31928113_31928185_31929331_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
ENSMUSG00000001864.14_0	chr2	+	1391	6	FSM	ENSMUSG00000001864.14	ENSMUST00000001920.13	3117	6	123	1603	-12	501	multi-exon	FALSE	canonical	3	20	junction_2	6.46838465151849	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTCTCCATGTGTGCT	NA	False	NA	14	True	NA	NA	NA	31840273	31861851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31840394_31840540_31840603_31852226_31852294_31855082_31855125_31859641_31859805_31860914
ENSMUSG00000001864.14_1	chr2	+	2487	1	ISM	ENSMUSG00000001864.14	ENSMUST00000001920.13	3117	6	20811	6	1630	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTATCAGTGTCTTTGTG	NA	False	NA	-2	True	AATAAA	-8	NA	31860961	31863448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_31861000_31863400
ENSMUSG00000001870.17_0	chr17	+	5919	34	NIC	ENSMUSG00000001870.17	novel	6671	34	NA	NA	-98	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_21	5.00871600276228	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATTTGAGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	75312714	75698321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_75313357_75314325_75314397_75372905_75373198_75458259_75458430_75486031_75486200_75532150_75532376_75533961_75534237_75555888_75555992_75559338_75559411_75573482_75573606_75580861_75581030_75583549_75583619_75585946_75585970_75589322_75589423_75589914_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75655738_75655865_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
ENSMUSG00000001870.17_18	chr17	+	5751	33	NIC	ENSMUSG00000001870.17	novel	6671	34	NA	NA	-98	0	combination_of_known_splicesites	TRUE	canonical	1	3	junction_4	5.84358288531103	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATTTGAGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	75312714	75698321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_75313357_75314325_75314397_75372905_75373198_75458259_75458430_75532150_75532376_75533961_75534237_75555888_75555992_75559338_75559411_75573482_75573606_75580861_75581030_75583549_75583619_75585946_75585970_75589322_75589423_75589914_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75655738_75655865_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
ENSMUSG00000001870.17_2	chr17	+	6076	34	FSM	ENSMUSG00000001870.17	ENSMUST00000001927.12	6671	34	152	443	-98	-2	multi-exon	FALSE	canonical	2	10	junction_21	5.00871600276228	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAAAATTTGAGTG	NA	False	NA	NA	False	AATAAA	-15	NA	75312714	75698319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_75313357_75314325_75314397_75372905_75373198_75458259_75458430_75486031_75486200_75532150_75532376_75533961_75534237_75555888_75555992_75559338_75559411_75573482_75573606_75580861_75581030_75583390_75583619_75585946_75585970_75589322_75589423_75589914_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75655738_75655865_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
ENSMUSG00000001870.17_4	chr17	+	5952	33	NIC	ENSMUSG00000001870.17	novel	6671	34	NA	NA	-98	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_24	6.24468524026632	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATTTGAGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	75312714	75698321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_75313357_75314325_75314397_75372905_75373198_75458259_75458430_75486031_75486200_75532150_75532376_75533961_75534237_75555888_75555992_75559338_75559411_75573482_75573606_75580861_75581030_75583390_75583619_75585946_75585970_75589322_75589423_75589914_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
ENSMUSG00000001870.17_5	chr17	+	5596	32	NIC	ENSMUSG00000001870.17	novel	6671	34	NA	NA	-71	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_23	6.94545419875872	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAAAATTTGAGTG	NA	False	NA	NA	False	AATAAA	-15	NA	75312741	75698319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_75313357_75314325_75314397_75372905_75373198_75458259_75458430_75532150_75532376_75533961_75534237_75555888_75555992_75559338_75559411_75573482_75573606_75580861_75581030_75583549_75583619_75585946_75585970_75589322_75589423_75589914_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
ENSMUSG00000001870.17_8	chr17	+	2987	20	ISM	ENSMUSG00000001870.17	ENSMUST00000112514.2	4870	30	104010	430	-7055	-430	3prime_fragment	FALSE	canonical	2	10	junction_7	5.02624689950035	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGAAATGTTTTATGTGA	NA	False	NA	NA	False	TTTAAA	-5	NA	75589915	75697891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75655738_75655865_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
ENSMUSG00000001891.17_0	chr11	-	2059	10	FSM	ENSMUSG00000001891.17	ENSMUST00000060895.6	2044	10	-17	2	-17	-2	multi-exon	FALSE	canonical	3	305	junction_7	61.1714853284106	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTTGCTGTCTAGTGCT	NA	False	NA	-9	True	AATAAA	-19	NA	21321218	21271674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21321014
ENSMUSG00000001891.17_1	chr11	-	2484	10	FSM	ENSMUSG00000001891.17	ENSMUST00000102875.11	2683	10	-337	536	-337	-1	multi-exon	TRUE	canonical	3	61	junction_9	120.111779214916	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTGCTGTCTAGTGCTC	NA	False	NA	-8	True	AATAAA	-20	NA	21320814	21271673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21320186
ENSMUSG00000001891.17_3	chr11	-	1763	8	NNC	ENSMUSG00000001891.17	novel	2683	10	NA	NA	-6803	-2	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_7	143.823020495642	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTTGCTGTCTAGTGCT	NA	False	NA	-9	True	AATAAA	-19	NA	21286695	21271674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21286551
ENSMUSG00000001901.16_1	chr11	+	2433	7	ISM	ENSMUSG00000001901.16	ENSMUST00000145539.2	2959	13	11942	-998	6372	513	3prime_fragment	FALSE	canonical	1	2	junction_2	1.95078331845327	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACACACTAGAAAAAGGAGA	8992	False	NA	NA	False	AATAAA	-12	NA	105910970	105925888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_105911148_105911316_105911570_105914550_105914745_105916513_105916705_105917541_105917699_105918382_105918564_105924608
ENSMUSG00000001901.16_12	chr11	+	2858	7	ISM	ENSMUSG00000001901.16	ENSMUST00000001965.14	3368	13	11973	-1045	6373	1045	3prime_fragment	FALSE	canonical	1	2	junction_2	2.11476292340825	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCTAGGTATCCAGTTAA	8993	False	NA	NA	False	AATAAA	-18	NA	105910971	105926420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_105911148_105911316_105911570_105914550_105914745_105916619_105916705_105917541_105917699_105918382_105918564_105924608
ENSMUSG00000001901.16_2	chr11	+	2033	6	NIC	ENSMUSG00000001901.16	novel	3368	13	NA	NA	6372	50	intron_retention	FALSE	canonical	1	2	junction_1	1.72046505340853	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGGGCTAGGTGTGTAA	8992	False	NA	NA	False	AATAAA	-15	NA	105910970	105925425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_105911570_105914550_105914745_105916619_105916705_105917541_105917699_105918382_105918564_105924608
ENSMUSG00000001901.16_6	chr11	+	2110	6	ISM	ENSMUSG00000001901.16	ENSMUST00000145539.2	2959	13	12441	-1005	6871	520	3prime_fragment	FALSE	canonical	1	2	junction_1	1.62480768092719	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAAAGGAGAACACGGT	9491	False	NA	NA	False	AATAAA	-19	NA	105911469	105925895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_105911570_105914550_105914745_105916513_105916705_105917541_105917699_105918382_105918564_105924608
ENSMUSG00000001901.16_8	chr11	+	4386	4	NIC	ENSMUSG00000001901.16	novel	3368	13	NA	NA	8874	49	intron_retention	FALSE	canonical	1	4	junction_2	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGGGCTAGGTGTGTA	NA	False	NA	NA	False	AATAAA	-14	NA	105913472	105925424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_105916705_105917541_105917699_105918382_105918564_105924608
ENSMUSG00000001909.17_1	chr8	+	2332	17	NIC	ENSMUSG00000001909.17	novel	2114	15	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	133.003230693844	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85412954	85426415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85413329_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_11	chr8	+	2052	17	NIC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	113.375964714749	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415911	85426415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_16	chr8	+	2128	17	FSM	ENSMUSG00000001909.17	ENSMUST00000001974.11	2567	17	417	22	0	0	multi-exon	FALSE	canonical	3	179	junction_1	103.16006979447	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415911	85426415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_18	chr8	+	2101	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109767.9	2138	17	36	1	0	0	multi-exon	FALSE	canonical	3	116	junction_1	116.091541869983	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415911	85426415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_23	chr8	+	2025	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	19	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	132.785409001705	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415911	85426415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_36	chr8	+	2360	16	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	179	junction_1	102.688395968905	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415917	85426415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85416006_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_85	chr8	+	2195	16	ISM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	205	2	5	-1	3prime_fragment	FALSE	canonical	3	403	junction_2	59.8663697097312	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGTTGTCATTTTGAAT	NA	False	NA	12	True	AATAAA	-12	NA	85416097	85426413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001910.6_1	chr8	-	4289	6	FSM	ENSMUSG00000001910.6	ENSMUST00000001975.6	4344	6	51	4	51	-4	multi-exon	FALSE	canonical	3	507	junction_4	52.9172939595365	1132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGCCCTGCTGTGCTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	85414480	85397111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85402969_85403882_85414303
ENSMUSG00000001910.6_2	chr8	-	1809	1	ISM	ENSMUSG00000001910.6	ENSMUST00000001975.6	4344	6	15611	4	4704	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGCCCTGCTGTGCTCTG	9097	False	NA	-10	True	AATAAA	-15	NA	85398920	85397111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_85397100_85398900
ENSMUSG00000001910.6_3	chr8	-	4175	6	NIC	ENSMUSG00000001910.6	novel	4344	6	NA	NA	43	-4	combination_of_known_junctions	FALSE	canonical	3	136	junction_5	189.167227605629	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGCCCTGCTGTGCTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	85413739	85397111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85402969_85403882_85413676
ENSMUSG00000001910.6_7	chr8	-	4208	6	NIC	ENSMUSG00000001910.6	novel	4344	6	NA	NA	51	-4	combination_of_known_junctions	FALSE	canonical	3	138	junction_4	190.539864595312	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGCCCTGCTGTGCTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	85414480	85397111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85403050_85403882_85414303
ENSMUSG00000001910.6_8	chr8	-	4120	6	NIC	ENSMUSG00000001910.6	novel	4344	6	NA	NA	17	-4	combination_of_known_junctions	FALSE	canonical	3	136	junction_5	237.650499683885	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGCCCTGCTGTGCTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	85413765	85397111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85403050_85403882_85413676
ENSMUSG00000001910.6_9	chr8	-	3650	5	ISM	ENSMUSG00000001910.6	ENSMUST00000001975.6	4344	6	11112	4	205	-4	3prime_fragment	FALSE	canonical	3	507	junction_4	58.4486954516523	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGCCCTGCTGTGCTCTG	4598	False	NA	-10	True	AATAAA	-15	NA	85403419	85397111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85402969
ENSMUSG00000001911.17_1	chr8	-	5447	10	FSM	ENSMUSG00000001911.17	ENSMUST00000099070.10	1728	10	155	-3874	-49	-30	multi-exon	FALSE	canonical	1	1	junction_9	0.942809041582063	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAGAAATAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	85526818	85431370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85435307_85440394_85440487_85448271_85448448_85450356_85450480_85453097_85453235_85453752_85453874_85454233_85454309_85454533_85454597_85498412_85498945_85526626
ENSMUSG00000001911.17_2	chr8	-	5566	10	NIC	ENSMUSG00000001911.17	novel	1728	10	NA	NA	33	-30	intron_retention	FALSE	canonical	0	0	junction_5	1.13311544746506	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAGAAATAAAGAAAA	9975	False	NA	NA	False	NA	NA	NA	85526940	85431370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_85435307_85440394_85440487_85448271_85448448_85450356_85450480_85453097_85453232_85453752_85453874_85454233_85454309_85454533_85454597_85498412_85498945_85526626
ENSMUSG00000001918.18_0	chr7	+	2700	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	31	33	3	-33	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	2813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGACCATGGCCCTAGAG	NA	False	NA	40	True	AATAAA	-14	NA	16515295	16532166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ENSMUSG00000001924.16_0	chrX	+	3472	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	96	476	1	-476	multi-exon	TRUE	canonical	3	1167	junction_1	494.469940036804	2267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTAGCCATCCTGGCTG	NA	False	NA	45	True	AATAAA	-14	NA	20524660	20548942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ENSMUSG00000001924.16_65	chrX	+	3562	26	FSM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	33	476	33	-476	multi-exon	FALSE	canonical	3	2172	junction_1	357.223416925598	4466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTAGCCATCCTGGCTG	NA	False	NA	45	True	AATAAA	-14	NA	20529169	20548942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ENSMUSG00000001930.18_11	chr6	+	2688	18	ISM	ENSMUSG00000001930.18	ENSMUST00000112254.8	8834	52	102130	6	147	1	3prime_fragment	FALSE	canonical	3	5	junction_9	5.41176470588235	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAAGGCTGGTTGTGGAC	NA	False	NA	4	True	AATAAA	-18	NA	125632040	125663636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125632216_125633578_125633772_125633962_125634305_125635678_125635879_125639927_125640031_125640466_125640542_125642056_125642162_125643541_125643748_125644433_125644584_125650808_125650920_125654853_125655035_125655726_125655768_125656206_125656324_125659689_125659789_125660479_125660609_125661055_125661096_125662772_125662871_125663313
ENSMUSG00000001930.18_22	chr6	+	3342	23	ISM	ENSMUSG00000001930.18	ENSMUST00000112254.8	8834	52	92958	6	-433	1	3prime_fragment	FALSE	canonical	2	5	junction_14	5.74600112474927	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAAGGCTGGTTGTGGAC	NA	False	NA	4	True	AATAAA	-18	NA	125622868	125663636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125622946_125623215_125623360_125624707_125624873_125625744_125625789_125626079_125626258_125631994_125632216_125633578_125633772_125633962_125634305_125635678_125635879_125639927_125640031_125640466_125640542_125642056_125642162_125643541_125643748_125644433_125644584_125650808_125650920_125654853_125655035_125655726_125655768_125656206_125656324_125659689_125659789_125660479_125660609_125661055_125661096_125662772_125662871_125663313
ENSMUSG00000001930.18_4	chr6	+	881	4	ISM	ENSMUSG00000001930.18	ENSMUST00000112253.6	2184	10	35561	302	-15026	-5	3prime_fragment	FALSE	canonical	3	17	junction_3	6.84754619472471	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTCCCGGGAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	125565486	125569132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125565597_125567141_125567265_125568112_125568225_125568596
ENSMUSG00000001930.18_5	chr6	+	7788	46	ISM	ENSMUSG00000001930.18	ENSMUST00000112254.8	8834	52	35600	6	-15002	1	3prime_fragment	TRUE	canonical	2	5	junction_37	5.89018853583265	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAAGGCTGGTTGTGGAC	NA	False	NA	4	True	AATAAA	-18	NA	125565510	125663636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125565597_125567141_125567265_125568112_125568225_125568596_125568644_125575444_125575582_125576214_125576354_125577592_125577694_125580286_125580483_125581092_125581309_125585064_125585306_125590997_125591093_125592922_125593084_125601501_125601606_125603197_125603337_125605303_125605439_125608059_125608207_125612517_125612659_125612830_125612945_125614342_125614500_125614929_125615089_125616225_125616362_125618997_125620377_125622599_125622717_125622804_125622946_125623215_125623360_125624707_125624873_125625744_125625789_125626079_125626258_125631994_125632216_125633578_125633772_125633962_125634305_125635678_125635879_125639927_125640031_125640466_125640542_125642056_125642162_125643541_125643748_125644433_125644584_125650808_125650920_125654853_125655035_125655726_125655768_125656206_125656324_125659689_125659789_125660479_125660609_125661055_125661096_125662772_125662871_125663313
ENSMUSG00000001930.18_8	chr6	+	4080	25	ISM	ENSMUSG00000001930.18	ENSMUST00000112254.8	8834	52	89904	11	-3487	-4	3prime_fragment	FALSE	canonical	2	5	junction_16	5.5137139630803	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTAACCAAGGCTGGTTG	NA	False	NA	-1	True	AATAAA	-13	NA	125619814	125663631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125620377_125622599_125622717_125622804_125622946_125623215_125623360_125624707_125624873_125625744_125625789_125626079_125626258_125631994_125632216_125633578_125633772_125633962_125634305_125635678_125635879_125639927_125640031_125640466_125640542_125642056_125642162_125643541_125643748_125644433_125644584_125650808_125650920_125654853_125655035_125655726_125655768_125656206_125656324_125659689_125659789_125660479_125660609_125661055_125661096_125662772_125662871_125663313
ENSMUSG00000001942.9_0	chr9	+	3389	10	FSM	ENSMUSG00000001942.9	ENSMUST00000215474.2	4947	10	158	1400	1	0	multi-exon	FALSE	canonical	3	33	junction_7	7.87400787401181	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGCGTTTCCAGTTTG	NA	False	NA	NA	False	AATATA	-14	NA	37525123	37559551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_37525223_37528095_37528258_37534194_37534371_37538995_37539135_37542644_37542901_37544253_37544364_37544916_37545051_37553935_37554094_37556047_37556244_37557592
ENSMUSG00000001942.9_1	chr9	+	1747	9	ISM	ENSMUSG00000001942.9	ENSMUST00000215474.2	4947	10	149	4400	-8	-1	5prime_fragment	FALSE	canonical	3	33	junction_7	7.74495803732983	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAACCTTGGTTGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	37525114	37556551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_37525223_37528095_37528258_37534194_37534371_37538995_37539135_37542644_37542901_37544253_37544364_37544916_37545051_37553935_37554094_37556047
ENSMUSG00000001942.9_6	chr9	+	1817	1	ISM	ENSMUSG00000001942.9	ENSMUST00000215474.2	4947	10	33568	601	4558	-601	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGGCTTATTGTATTTT	2835	False	NA	NA	False	NA	NA	NA	37558533	37560350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_37558500_37560400
ENSMUSG00000001943.9_0	chr9	+	1160	7	FSM	ENSMUSG00000001943.9	ENSMUST00000002008.7	1166	7	5	1	5	-1	multi-exon	FALSE	canonical	0	0	junction_1	3.13138237134266	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCGTTCTCCTTTCTAGT	NA	False	NA	NA	False	ATTAAA	-15	NA	37450555	37455496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_37450735_37451164_37451323_37451589_37451798_37452622_37452782_37453650_37453771_37453884_37454030_37455305
ENSMUSG00000001943.9_1	chr9	+	1266	6	ISM	ENSMUSG00000001943.9	ENSMUST00000002008.7	1166	7	329	1	290	-1	3prime_fragment	FALSE	canonical	2	5	junction_5	1.62480768092719	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCGTTCTCCTTTCTAGT	NA	False	NA	NA	False	ATTAAA	-15	NA	37450879	37455496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_37451323_37451589_37451798_37452622_37452782_37453650_37453771_37453884_37454030_37455305
ENSMUSG00000001943.9_2	chr9	+	1174	5	NIC	ENSMUSG00000001943.9	novel	1166	7	NA	NA	218	-6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	3.39116499156263	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCACCTCGTTCTCCTTT	NA	False	NA	NA	False	ATTAAA	-10	NA	37450807	37455491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_37451323_37451589_37451798_37453650_37453771_37453884_37454030_37455305
ENSMUSG00000001946.15_0	chr9	+	1836	7	FSM	ENSMUSG00000001946.15	ENSMUST00000002011.14	1865	7	20	9	20	-9	multi-exon	FALSE	canonical	0	0	junction_1	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGACAAGAAGTAATTGAATC	5202	False	NA	NA	False	AATAAA	-19	NA	37439393	37449606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_37439587_37442783_37442972_37445448_37445651_37445833_37445990_37447893_37448017_37448301_37448429_37448759
ENSMUSG00000001948.11_0	chr9	-	6473	3	NIC	ENSMUSG00000001948.11	novel	696	5	NA	NA	-46	-11	intron_retention	FALSE	canonical	2	7	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCATCAGTGTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	37524912	37514596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_37514783_37517088_37523315_37524851
ENSMUSG00000001948.11_1	chr9	-	652	5	FSM	ENSMUSG00000001948.11	ENSMUST00000002013.11	696	5	33	11	33	-11	multi-exon	TRUE	canonical	2	6	junction_2	1.92028643696715	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCATCAGTGTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	37524985	37514596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_37514783_37517088_37517167_37518912_37518984_37523131_37523315_37524851
ENSMUSG00000001962.9_0	chrX	+	1350	13	FSM	ENSMUSG00000001962.9	ENSMUST00000114160.2	1383	13	17	16	17	-1	multi-exon	FALSE	canonical	3	663	junction_3	69.864700592566	633	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGAGTGCCTGCATTAT	216	False	NA	NA	False	AATAAA	-17	NA	73356655	73363739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
ENSMUSG00000001964.15_0	chrX	+	1319	6	FSM	ENSMUSG00000001964.15	ENSMUST00000002029.13	1595	6	135	141	6	-141	multi-exon	FALSE	canonical	3	248	junction_2	18.1592951405059	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGTTGATTCTTCCTAC	NA	False	NA	19	True	AATAAA	-14	NA	73298427	73301352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612
ENSMUSG00000001964.15_10	chrX	+	336	1	ISM	ENSMUSG00000001964.15	ENSMUST00000002029.13	1595	6	2724	141	2581	-141	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGTTGATTCTTCCTAC	NA	False	NA	19	True	AATAAA	-14	NA	73301016	73301352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73301000_73301400
ENSMUSG00000001964.15_3	chrX	+	1321	6	FSM	ENSMUSG00000001964.15	ENSMUST00000088313.5	1338	6	8	9	8	-9	multi-exon	FALSE	canonical	3	12	junction_5	106.854293315711	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAGCCAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-4	NA	73298443	73305145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73304387
ENSMUSG00000001983.8_0	chr11	+	1340	5	FSM	ENSMUSG00000001983.8	ENSMUST00000002048.8	1383	5	25	18	25	-18	multi-exon	FALSE	canonical	3	51	junction_3	5.93717104351896	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTGTTGCTGGTATG	899	False	NA	8	True	NA	NA	NA	105956911	105964420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_105957345_105960331_105960439_105962692_105962821_105963356_105963535_105963926
ENSMUSG00000001985.10_11	chr4	+	3602	14	ISM	ENSMUSG00000001985.10	ENSMUST00000030676.8	8973	16	141579	4937	141579	-4937	3prime_fragment	FALSE	canonical	2	6	junction_11	6.21888705581777	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAGACCTCCAGAGGCC	NA	False	NA	NA	False	AAGAAA	-20	NA	125526071	125603029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_125526319_125533073_125533256_125535336_125535391_125543471_125543646_125544240_125544385_125550080_125550189_125553481_125553596_125564345_125564550_125579786_125580011_125584887_125585007_125587754_125587973_125598125_125598349_125598747_125598999_125601689
ENSMUSG00000001985.10_17	chr4	+	2814	1	ISM	ENSMUSG00000001985.10	ENSMUST00000030676.8	8973	16	220652	8	220652	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGTCCCTTCCCAAG	NA	False	NA	3	True	AATAAA	-10	NA	125605144	125607958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_125605100_125608000
ENSMUSG00000001985.10_2	chr4	+	9210	16	FSM	ENSMUSG00000001985.10	ENSMUST00000030676.8	8973	16	-245	8	-245	-8	multi-exon	FALSE	canonical	2	6	junction_13	6.12100209660695	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGTCCCTTCCCAAG	NA	False	NA	3	True	AATAAA	-10	NA	125384247	125607958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_125384739_125517273_125517451_125526060_125526319_125533073_125533256_125535336_125535391_125543471_125543646_125544240_125544385_125550080_125550189_125553481_125553596_125564345_125564550_125579786_125580011_125584887_125585007_125587754_125587973_125598125_125598349_125598747_125598999_125601689
ENSMUSG00000001985.10_25	chr4	+	3529	15	ISM	ENSMUSG00000001985.10	ENSMUST00000030676.8	8973	16	-280	8415	-280	-8415	5prime_fragment	FALSE	canonical	2	6	junction_13	6.1145527311522	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTCTGCTTTTTGCATA	NA	False	NA	NA	False	NA	NA	NA	125384212	125599551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_125384739_125517273_125517451_125526060_125526319_125533073_125533256_125535336_125535391_125543471_125543646_125544240_125544385_125550080_125550189_125553481_125553596_125564345_125564550_125579786_125580011_125584887_125585007_125587754_125587973_125598125_125598349_125598747
ENSMUSG00000001985.10_5	chr4	+	2480	9	ISM	ENSMUSG00000001985.10	ENSMUST00000030676.8	8973	16	-187	53535	-187	-53535	5prime_fragment	FALSE	canonical	2	9	junction_1	5.3619026473818	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCCATACCCGGATGCC	NA	False	NA	NA	False	ATTAAA	-6	NA	125384305	125554431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_125384739_125517273_125517451_125526060_125526319_125533073_125533256_125535336_125535391_125543471_125543646_125544240_125544385_125550080_125550189_125553481
ENSMUSG00000001986.17_0	chrX	+	2102	11	FSM	ENSMUSG00000001986.17	ENSMUST00000148212.2	5206	11	-126	3230	-42	-2775	multi-exon	FALSE	canonical	0	0	junction_2	2.10713075057055	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGGTCTTACTGCCC	NA	False	NA	NA	False	AATACA	-15	NA	40490232	40699201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_40490533_40491677_40491837_40567436_40567677_40629952_40630141_40658764_40658819_40677340_40677503_40680586_40680755_40684558_40684664_40685495_40685604_40687330_40687538_40698790
ENSMUSG00000001995.10_18	chr8	-	6514	21	NIC	ENSMUSG00000001995.10	novel	6690	23	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_3	49.3409312842796	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCAGAAGCAGTGTTGC	NA	False	NA	-8	True	AATAAA	-16	NA	126296557	126144814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_126146031_126148619_126148702_126149317_126149442_126166002_126166223_126169321_126169476_126171224_126171450_126174245_126174632_126176619_126176724_126177071_126177173_126178657_126178742_126180039_126180298_126190890_126191166_126194913_126195491_126196486_126196645_126200236_126200341_126201562_126201738_126206892_126207082_126208786_126208921_126217849_126219573_126246584_126246646_126296393
ENSMUSG00000001995.10_3	chr8	-	6652	22	FSM	ENSMUSG00000001995.10	ENSMUST00000212168.2	6586	22	-68	2	-16	0	multi-exon	FALSE	canonical	3	164	junction_19	26.9293187551557	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCAGAAGCAGTGTTGC	NA	False	NA	-8	True	AATAAA	-16	NA	126296563	126144814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_126146031_126148619_126148702_126149317_126149442_126159916_126160049_126166002_126166223_126169321_126169476_126171224_126171450_126174245_126174632_126176619_126176724_126177071_126177173_126178657_126178742_126180039_126180298_126190890_126191166_126194913_126195491_126196486_126196645_126200236_126200341_126201562_126201738_126206892_126207082_126208786_126208921_126217849_126219573_126246584_126246646_126296393
ENSMUSG00000001995.10_7	chr8	-	3650	14	ISM	ENSMUSG00000001995.10	ENSMUST00000212168.2	6586	22	101293	2	24247	0	3prime_fragment	FALSE	canonical	3	195	junction_11	18.5520218518872	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCAGAAGCAGTGTTGC	NA	False	NA	-8	True	AATAAA	-16	NA	126195202	126144814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_126146031_126148619_126148702_126149317_126149442_126159916_126160049_126166002_126166223_126169321_126169476_126171224_126171450_126174245_126174632_126176619_126176724_126177071_126177173_126178657_126178742_126180039_126180298_126190890_126191166_126194913
ENSMUSG00000001995.10_8	chr8	-	5539	20	ISM	ENSMUSG00000001995.10	ENSMUST00000212168.2	6586	22	77805	2	759	0	3prime_fragment	TRUE	canonical	3	164	junction_19	25.4968359342739	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCAGAAGCAGTGTTGC	NA	False	NA	-8	True	AATAAA	-16	NA	126218690	126144814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_126146031_126148619_126148702_126149317_126149442_126159916_126160049_126166002_126166223_126169321_126169476_126171224_126171450_126174245_126174632_126176619_126176724_126177071_126177173_126178657_126178742_126180039_126180298_126190890_126191166_126194913_126195491_126196486_126196645_126200236_126200341_126201562_126201738_126206892_126207082_126208786_126208921_126217849
ENSMUSG00000001998.16_1	chr2	+	6109	21	FSM	ENSMUSG00000001998.16	ENSMUST00000002063.15	4600	21	-4	-1505	2	1505	multi-exon	TRUE	canonical	3	34	junction_11	7.58468852359805	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGGTCTGTATGTTCTTT	NA	False	NA	2	True	AATAAA	-15	NA	126850645	126911334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_126850821_126853710_126853783_126856089_126856214_126861205_126861280_126870091_126870214_126875449_126875610_126876963_126877131_126879705_126879780_126885340_126885464_126885566_126885677_126888067_126888208_126888765_126888879_126888962_126889082_126891179_126891483_126894099_126894215_126898100_126898225_126902181_126902441_126903445_126903959_126905189_126905381_126906791_126906950_126908461
ENSMUSG00000001998.16_24	chr2	+	3945	5	ISM	ENSMUSG00000001998.16	ENSMUST00000002063.15	4600	21	51582	-1506	11001	1506	3prime_fragment	FALSE	canonical	3	46	junction_1	5.76085931090146	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTCTGTATGTTCTTTA	NA	False	NA	3	True	AATAAA	-16	NA	126902231	126911335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_126902441_126903445_126903959_126905189_126905381_126906791_126906950_126908461
ENSMUSG00000001999.16_0	chr2	+	1024	6	NIC	ENSMUSG00000001999.16	novel	772	7	NA	NA	3	417	combination_of_known_junctions	FALSE	canonical	3	37	junction_5	66.545022353291	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATATATTGTGAGTCGA	2240	False	NA	NA	False	NA	NA	NA	126912615	126932686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126932163
ENSMUSG00000001999.16_17	chr2	+	2253	4	ISM	ENSMUSG00000001999.16	ENSMUST00000142737.3	676	6	251	3419	251	857	internal_fragment	FALSE	canonical	3	175	junction_1	9.10433352249844	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAGGTAAAAAAAAATTCT	NA	False	NA	NA	False	NA	NA	NA	126922447	126930647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_126922579_126924851_126924971_126927882_126928003_126928764
ENSMUSG00000001999.16_4	chr2	+	2295	5	FSM	ENSMUSG00000001999.16	ENSMUST00000142861.2	1460	5	29	-864	1	864	multi-exon	FALSE	canonical	3	72	junction_1	50.701947694344	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATTCTAACTCAG	2238	False	NA	NA	False	NA	NA	NA	126912613	126930654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764
ENSMUSG00000001999.16_5	chr2	+	1125	8	FSM	ENSMUSG00000001999.16	ENSMUST00000002064.15	1160	8	27	8	1	-8	multi-exon	FALSE	canonical	3	72	junction_1	50.5988626152721	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGAACGAGAATAGTGT	2238	False	NA	NA	False	AATAAA	-12	NA	126912613	126938996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
ENSMUSG00000001999.16_7	chr2	+	2291	5	NNC	ENSMUSG00000001999.16	novel	657	6	NA	NA	0	864	intron_retention	FALSE	canonical	3	18	junction_1	73.8896981994107	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATTCTAACTCAG	2237	False	NA	NA	False	NA	NA	NA	126912612	126930654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_126912646_126922449_126922579_126924851_126924971_126927882_126928003_126928764
ENSMUSG00000001999.16_8	chr2	+	1119	8	NNC	ENSMUSG00000001999.16	novel	1160	8	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	61.7962418776747	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAACAGAACGAGAATAGT	2237	False	NA	NA	False	AATAAA	-10	NA	126912612	126938994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_126912646_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
ENSMUSG00000002006.13_1	chrX	-	1985	1	ISM	ENSMUSG00000002006.13	ENSMUST00000002080.12	3970	8	29626	0	29626	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGGACTTGTGTTCATT	NA	False	NA	-6	True	AATAAA	-22	NA	72838949	72836964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72837000_72838900
ENSMUSG00000002006.13_3	chrX	-	3951	8	FSM	ENSMUSG00000002006.13	ENSMUST00000002080.12	3970	8	17	2	17	-2	multi-exon	FALSE	canonical	1	1	junction_1	0.699854212223765	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTGGACTTGTGTTCA	NA	False	NA	-8	True	AATAAA	-20	NA	72868558	72836966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72839527_72839706_72839818_72839981_72840084_72840435_72840499_72841799_72841899_72842363_72842455_72843439_72843694_72867887
ENSMUSG00000002010.18_0	chrX	-	1304	12	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	11	-4	combination_of_known_junctions	FALSE	canonical	3	1072	junction_10	144.485579365652	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGGCCCTGTTCTTC	NA	False	NA	-32	True	AATAAA	-15	NA	72830492	72822572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
ENSMUSG00000002010.18_1	chrX	-	1311	13	FSM	ENSMUSG00000002010.18	ENSMUST00000052761.9	1331	13	16	4	16	-4	multi-exon	FALSE	canonical	2	205	junction_10	445.162891535222	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGGCCCTGTTCTTC	NA	False	NA	-32	True	AATAAA	-15	NA	72830487	72822572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830380
ENSMUSG00000002010.18_18	chrX	-	1282	13	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	17	-4	combination_of_known_junctions	TRUE	canonical	2	205	junction_10	516.424862771816	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGGCCCTGTTCTTC	NA	False	NA	-32	True	AATAAA	-15	NA	72830211	72822572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830133
ENSMUSG00000002010.18_2	chrX	-	2340	9	NIC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	4	-4	intron_retention	FALSE	canonical	3	1120	junction_6	124.053415914275	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGGCCCTGTTCTTC	NA	False	NA	-32	True	AATAAA	-15	NA	72830499	72822572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
ENSMUSG00000002010.18_4	chrX	-	1277	12	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	10	-4	combination_of_known_junctions	FALSE	canonical	3	210	junction_11	355.941284971423	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGGCCCTGTTCTTC	NA	False	NA	-32	True	AATAAA	-15	NA	72830218	72822572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830133
ENSMUSG00000002012.14_1	chrX	-	1481	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114472.8	1532	12	51	0	51	0	multi-exon	FALSE	canonical	3	38	junction_11	13.5176652099123	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCTGGTGCTGAACTGG	NA	False	NA	-3	True	AATAAA	-14	NA	72703672	72699600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
ENSMUSG00000002012.14_11	chrX	-	628	3	ISM	ENSMUSG00000002012.14	ENSMUST00000129106.2	843	6	831	-258	831	1	3prime_fragment	FALSE	canonical	3	62	junction_1	9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGCTGAACTGGGT	NA	False	NA	-1	True	AATAAA	-16	NA	72700606	72699598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72699993_72700275_72700421_72700517
ENSMUSG00000002012.14_21	chrX	-	1437	11	NIC	ENSMUSG00000002012.14	novel	1532	12	NA	NA	25	0	combination_of_known_splicesites	TRUE	canonical	2	5	junction_10	21.6148097377701	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCTGGTGCTGAACTGG	NA	False	NA	-3	True	AATAAA	-14	NA	72703698	72699600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72703624
ENSMUSG00000002012.14_3	chrX	-	1428	12	NNC	ENSMUSG00000002012.14	novel	1532	12	NA	NA	51	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	20.4110648974504	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCTGGTGCTGAACTGG	NA	False	NA	-3	True	AATAAA	-14	NA	72703672	72699600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72699940_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
ENSMUSG00000002012.14_6	chrX	-	1625	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114473.8	1492	12	-134	1	-30	0	multi-exon	FALSE	canonical	3	9	junction_11	19.8644164606543	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCTGGTGCTGAACTGG	NA	False	NA	-3	True	AATAAA	-14	NA	72703464	72699600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703272
ENSMUSG00000002014.13_12	chrX	+	1404	3	ISM	ENSMUSG00000002014.13	ENSMUST00000166518.8	800	6	6	13	6	0	intron_retention	FALSE	canonical	3	1181	junction_1	237.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGTACATTCAAGACAC	5438	False	NA	33	True	AATAAA	-15	NA	72830639	72834417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72830913_72832440_72832560_72833405
ENSMUSG00000002014.13_14	chrX	+	990	5	ISM	ENSMUSG00000002014.13	ENSMUST00000166518.8	800	6	25	14	-9	-1	intron_retention	FALSE	canonical	3	1181	junction_1	174.03789098929	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGAGTACATTCAAGACA	5457	False	NA	32	True	AATAAA	-14	NA	72830658	72834416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636_72833727_72833964
ENSMUSG00000002014.13_3	chrX	+	784	6	FSM	ENSMUSG00000002014.13	ENSMUST00000002090.3	765	6	-30	11	4	4	multi-exon	FALSE	canonical	3	426	junction_1	441.755135793575	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACATTCAAGACACGGGG	5436	False	NA	37	True	AATAAA	-19	NA	72830637	72834421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72830913_72832443_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUSG00000002014.13_5	chrX	+	782	6	FSM	ENSMUSG00000002014.13	ENSMUST00000166518.8	800	6	9	9	9	4	multi-exon	FALSE	canonical	3	1181	junction_1	165.944569058466	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACATTCAAGACACGGGG	5441	False	NA	37	True	AATAAA	-19	NA	72830642	72834421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUSG00000002014.13_6	chrX	+	1017	5	ISM	ENSMUSG00000002014.13	ENSMUST00000002090.3	765	6	-31	8	3	-6	intron_retention	FALSE	canonical	3	426	junction_1	493.487081897794	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTCAAGACACGGGGCTC	5435	False	NA	40	True	AATAAA	-22	NA	72830636	72834424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72830913_72832443_72832560_72833405_72833481_72833636_72833727_72833964
ENSMUSG00000002015.6_0	chrX	-	1190	8	FSM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	25	4	25	-4	multi-exon	FALSE	canonical	3	2403	junction_7	231.225131040053	1368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGTGTTTGTGTCTAAC	NA	False	NA	-17	True	AATAAA	-13	NA	72759756	72729787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
ENSMUSG00000002015.6_3	chrX	-	1158	7	ISM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	1246	4	1246	-4	3prime_fragment	FALSE	canonical	3	2622	junction_2	169.828099363248	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGTGTTTGTGTCTAAC	NA	False	NA	-17	True	AATAAA	-13	NA	72758535	72729787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398
ENSMUSG00000002017.11_1	chr17	-	2732	8	FSM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	78	7	5	2	multi-exon	FALSE	canonical	3	156	junction_4	28.1765570527511	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTGCTCTGGGAGTTT	NA	False	NA	-8	True	AATAAA	-15	NA	75858863	75844087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_75845857_75845941_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
ENSMUSG00000002017.11_7	chr17	-	1533	1	ISM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	13321	7	1947	2	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTGCTCTGGGAGTTT	NA	False	NA	-8	True	AATAAA	-15	NA	75845620	75844087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_75844100_75845600
ENSMUSG00000002028.14_1	chr9	-	7730	10	ISM	ENSMUSG00000002028.14	ENSMUST00000114689.8	16470	36	60988	9	-194	-9	3prime_fragment	FALSE	canonical	0	0	junction_4	6.65183535426478	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCTGCACTCTGCTGAGC	3622	False	NA	NA	False	AATAAA	-13	NA	44731606	44714660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44719475_44720360_44720491_44721011_44721096_44721932_44722037_44722198_44722378_44724283_44724359_44725871_44726043_44727891_44727957_44729002_44729084_44729579
ENSMUSG00000002028.14_10	chr9	-	4985	3	ISM	ENSMUSG00000002028.14	ENSMUST00000114689.8	16470	36	71542	9	10360	-9	3prime_fragment	FALSE	canonical	3	18	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCTGCACTCTGCTGAGC	5035	False	NA	NA	False	AATAAA	-13	NA	44721052	44714660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44719475_44720360_44720491_44721011
ENSMUSG00000002028.14_12	chr9	-	4846	2	ISM	ENSMUSG00000002028.14	ENSMUST00000114689.8	16470	36	72210	1	11028	-1	3prime_fragment	FALSE	canonical	3	21	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCTGAGCTTCCTTTG	5703	False	NA	NA	False	AATAAA	-21	NA	44720384	44714652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44719475_44720360
ENSMUSG00000002028.14_17	chr9	-	3619	6	ISM	ENSMUSG00000002028.14	ENSMUST00000114689.8	16470	36	325	39706	-105	-1498	5prime_fragment	FALSE	canonical	2	5	junction_1	1.01980390271856	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAACACGGCCTCAGCTTT	9541	False	NA	NA	False	AATAAA	-19	NA	44792269	44754357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44754720_44756685_44756921_44758149_44758328_44758700_44761352_44764234_44764305_44792146
ENSMUSG00000002028.14_2	chr9	-	3488	1	ISM	ENSMUSG00000002028.14	ENSMUST00000114689.8	16470	36	74446	9	13264	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCTGCACTCTGCTGAGC	7939	False	NA	NA	False	AATAAA	-13	NA	44718148	44714660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44714700_44718100
ENSMUSG00000002028.14_3	chr9	-	5062	4	ISM	ENSMUSG00000002028.14	ENSMUST00000114689.8	16470	36	70636	1	9454	-1	3prime_fragment	FALSE	canonical	3	18	junction_2	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCTGAGCTTCCTTTG	4129	False	NA	NA	False	AATAAA	-21	NA	44721958	44714652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44719475_44720360_44720491_44721011_44721096_44721932
ENSMUSG00000002031.14_0	chr9	+	1556	12	FSM	ENSMUSG00000002031.14	ENSMUST00000238800.2	1059	12	-187	-310	6	-1	multi-exon	FALSE	canonical	3	173	junction_2	11.1058022211458	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTTCTGGCTCATTA	NA	False	NA	5	True	AATACA	-14	NA	44684262	44702187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44684471_44684984_44685082_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
ENSMUSG00000002032.18_0	chr9	-	2749	8	ISM	ENSMUSG00000002032.18	ENSMUST00000002100.8	2448	9	119	3	3	-3	intron_retention	FALSE	canonical	3	7	junction_2	2.79941684889506	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAGAAGTGTTTGTTC	8291	False	NA	NA	False	AGTAAA	-12	NA	44710485	44705075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44706346_44706487_44706575_44706706_44706808_44706978_44707010_44707292_44707425_44707620_44707912_44709417_44709730_44709960
ENSMUSG00000002032.18_2	chr9	-	2391	9	FSM	ENSMUSG00000002032.18	ENSMUST00000002100.8	2448	9	54	3	-11	-3	multi-exon	FALSE	canonical	2	3	junction_8	3.68908864084343	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAGAAGTGTTTGTTC	8226	False	NA	NA	False	AGTAAA	-12	NA	44710550	44705075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44706346_44706487_44706575_44706706_44706808_44706978_44707010_44707292_44707425_44707620_44707912_44709417_44709730_44709960_44710055_44710477
ENSMUSG00000002032.18_9	chr9	-	2386	9	NIC	ENSMUSG00000002032.18	novel	2448	9	NA	NA	-6	-6	combination_of_known_junctions	FALSE	canonical	2	2	junction_8	3.92905841137543	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAAGAAAGAAGTGTTTG	8231	False	NA	NA	False	AGTAAA	-9	NA	44710545	44705078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44706346_44706487_44706575_44706706_44706808_44706978_44707010_44707292_44707425_44707620_44707912_44709417_44709730_44709960_44710058_44710477
ENSMUSG00000002033.15_0	chr9	-	989	7	FSM	ENSMUSG00000002033.15	ENSMUST00000002101.12	1023	7	32	2	32	-2	multi-exon	FALSE	canonical	2	5	junction_5	2.73353657780945	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCTCTCTATCCAAATAGA	NA	False	NA	NA	False	ATTAAA	-16	NA	44891697	44880871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44881216_44881988_44882072_44882560_44882605_44884803_44884936_44885460_44885689_44886544_44886569_44891563
ENSMUSG00000002043.18_1	chr7	+	1976	2	NNC	ENSMUSG00000002043.18	novel	955	4	NA	NA	-1041	543	intron_retention	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTCTGTGAGCCTGCAC	NA	False	NA	NA	False	AATAAA	-12	NA	19241278	19243384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_19242311_19242440
ENSMUSG00000002043.18_10	chr7	+	1227	5	NIC	ENSMUSG00000002043.18	novel	785	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	436	junction_1	68.656299783778	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGACCTGTGCAGTGCT	525	False	NA	14	True	AGTAAA	-15	NA	19242654	19250063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_19242758_19248125_19248194_19248346_19249016_19249128_19249223_19249770
ENSMUSG00000002043.18_6	chr7	+	758	6	FSM	ENSMUSG00000002043.18	ENSMUST00000002112.15	785	6	20	7	2	0	multi-exon	FALSE	canonical	3	436	junction_1	62.2009646227452	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGACCTGTGCAGTGCT	527	False	NA	14	True	AGTAAA	-15	NA	19242656	19250063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ENSMUSG00000002043.18_7	chr7	+	689	5	FSM	ENSMUSG00000002043.18	ENSMUST00000147114.2	719	5	23	7	3	0	multi-exon	FALSE	canonical	3	104	junction_1	197.958802532244	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGACCTGTGCAGTGCT	528	False	NA	14	True	AGTAAA	-15	NA	19242657	19250063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_19242758_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ENSMUSG00000002043.18_9	chr7	+	746	6	NIC	ENSMUSG00000002043.18	novel	785	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_3	193.692126840509	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGACCTGTGCAGTGCT	521	False	NA	14	True	AGTAAA	-15	NA	19242650	19250063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_19242758_19248125_19248194_19248346_19248465_19248949_19249016_19249128_19249223_19249770
ENSMUSG00000002052.7_28	chr11	-	3645	21	ISM	ENSMUSG00000002052.7	ENSMUST00000002121.5	6488	37	20543	282	-1758	0	3prime_fragment	FALSE	canonical	3	251	junction_18	42.9935751014032	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCGCTTGCCGAGGCCTC	NA	False	NA	-12	True	AATAAA	-13	NA	78116270	78097853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_78098596_78098875_78099064_78099677_78099845_78099927_78100006_78100249_78100363_78102622_78102748_78102908_78103023_78103494_78103734_78104092_78104289_78107030_78107172_78108666_78108810_78109993_78110142_78110708_78110917_78111946_78112075_78112935_78113104_78113173_78113312_78113595_78113732_78113979_78114057_78115191_78115310_78115421_78115562_78116132
ENSMUSG00000002052.7_29	chr11	-	3457	20	ISM	ENSMUSG00000002052.7	ENSMUST00000002121.5	6488	37	21304	280	-997	2	3prime_fragment	FALSE	canonical	3	251	junction_18	43.7487791677706	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCTTGCCGAGGCCTCCA	NA	False	NA	-10	True	AATAAA	-15	NA	78115509	78097851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_78098596_78098875_78099064_78099677_78099845_78099927_78100006_78100249_78100363_78102622_78102748_78102908_78103023_78103494_78103734_78104092_78104289_78107030_78107172_78108666_78108810_78109993_78110142_78110708_78110917_78111946_78112075_78112935_78113104_78113173_78113312_78113595_78113732_78113979_78114057_78115191_78115310_78115421
ENSMUSG00000002052.7_4	chr11	-	5913	37	FSM	ENSMUSG00000002052.7	ENSMUST00000002121.5	6488	37	293	282	293	0	multi-exon	TRUE	canonical	3	251	junction_18	43.9224555183955	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCGCTTGCCGAGGCCTC	NA	False	NA	-12	True	AATAAA	-13	NA	78136520	78097853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78098596_78098875_78099064_78099677_78099845_78099927_78100006_78100249_78100363_78102622_78102748_78102908_78103023_78103494_78103734_78104092_78104289_78107030_78107172_78108666_78108810_78109993_78110142_78110708_78110917_78111946_78112075_78112935_78113104_78113173_78113312_78113595_78113732_78113979_78114057_78115191_78115310_78115421_78115562_78116132_78116329_78116489_78116645_78116772_78116924_78117005_78117136_78117500_78117600_78117716_78117866_78119454_78119598_78119779_78119870_78120222_78120340_78120991_78121094_78121753_78122028_78122598_78122684_78122843_78123037_78123330_78123408_78123500_78123660_78124370_78124510_78136373
ENSMUSG00000002055.10_0	chr11	+	3808	24	FSM	ENSMUSG00000002055.10	ENSMUST00000045026.4	3887	24	74	5	-21	-5	multi-exon	FALSE	canonical	3	128	junction_10	25.9765053072448	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCTTCCAGTCCACTGA	2826	False	NA	3	True	AATAAA	-13	NA	78192428	78213278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
ENSMUSG00000002055.10_38	chr11	+	3225	22	ISM	ENSMUSG00000002055.10	ENSMUST00000045026.4	3887	24	2862	9	2736	-9	3prime_fragment	FALSE	canonical	3	128	junction_8	27.1073284599539	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAGTCCTTCCAGTCCA	403	False	NA	-1	True	AATAAA	-9	NA	78195216	78213274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
ENSMUSG00000002058.14_0	chr11	+	1298	5	FSM	ENSMUSG00000002058.14	ENSMUST00000002127.14	1329	5	22	9	-2	-9	multi-exon	FALSE	canonical	3	235	junction_3	19.8557296516648	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCGGCCAGCCTGTGTGTC	NA	False	NA	10	True	AATAAA	-17	NA	78234329	78239981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239356
ENSMUSG00000002058.14_4	chr11	+	1355	5	FSM	ENSMUSG00000002058.14	ENSMUST00000108295.8	1371	5	6	10	6	-10	multi-exon	FALSE	canonical	3	22	junction_4	104.920207777148	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCGGCCAGCCTGTGTGT	NA	False	NA	9	True	AATAAA	-16	NA	78234337	78239980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239290
ENSMUSG00000002059.19_0	chr11	+	1339	11	FSM	ENSMUSG00000002059.19	ENSMUST00000002128.14	1368	11	27	2	17	1	multi-exon	FALSE	canonical	3	60	junction_1	27.8790243731735	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCTTTCTTTCTTTAA	6052	False	NA	19	True	ATTAAA	-13	NA	78079282	78083012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78079338_78080003_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ENSMUSG00000002059.19_4	chr11	+	1680	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	4	1	4	-1	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCTTTCTTTCTTTAAA	6378	False	NA	20	True	ATTAAA	-14	NA	78079608	78083013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ENSMUSG00000002064.11_16	chr11	+	2968	2	FSM	ENSMUSG00000002064.11	ENSMUST00000133020.2	586	2	-2024	-358	-1551	-21	multi-exon	FALSE	canonical	3	225	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAAAGACTTTTATTC	NA	False	NA	-2	True	NA	NA	NA	78139695	78146301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78142039_78145676
ENSMUSG00000002064.11_18	chr11	+	475	1	ISM	ENSMUSG00000002064.11	ENSMUST00000002133.9	1268	3	9271	5	4123	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATTGTGTGGTCATTTA	NA	False	NA	14	True	NA	NA	NA	78145842	78146317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78145800_78146300
ENSMUSG00000002064.11_2	chr11	+	1001	3	FSM	ENSMUSG00000002064.11	ENSMUST00000002133.9	1268	3	246	21	246	-21	multi-exon	FALSE	canonical	3	217	junction_1	4	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAAAGACTTTTATTC	NA	False	NA	-2	True	NA	NA	NA	78136817	78146301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78136997_78141841_78142039_78145676
ENSMUSG00000002068.17_1	chr7	-	1941	12	FSM	ENSMUSG00000002068.17	ENSMUST00000108023.10	2000	12	57	2	25	-2	multi-exon	FALSE	canonical	2	563	junction_4	98.4049652714874	1051	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGCTGTTCTTAACTCT	NA	False	NA	-14	True	AATAAA	-17	NA	37806902	37797410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
ENSMUSG00000002076.13_0	chr17	-	1448	7	FSM	ENSMUSG00000002076.13	ENSMUST00000133308.3	1479	7	24	7	-5	6	multi-exon	FALSE	canonical	3	341	junction_1	334.770941590415	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAATCTTGGGTTTAGG	NA	False	NA	-20	True	AATAAA	-23	NA	32253487	32165062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32165786_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002076.13_1	chr17	-	1552	8	FSM	ENSMUSG00000002076.13	ENSMUST00000002145.12	2867	8	-5	1320	-5	6	multi-exon	FALSE	canonical	3	776	junction_1	207.062940248828	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAATCTTGGGTTTAGG	NA	False	NA	-20	True	AATAAA	-23	NA	32253487	32165062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002076.13_2	chr17	-	1402	7	NIC	ENSMUSG00000002076.13	novel	3115	9	NA	NA	-5	6	combination_of_known_splicesites	FALSE	canonical	3	97	junction_4	419.803393136464	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAATCTTGGGTTTAGG	NA	False	NA	-20	True	AATAAA	-23	NA	32253487	32165062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002076.13_6	chr17	-	1299	6	NIC	ENSMUSG00000002076.13	novel	1479	7	NA	NA	-6	6	combination_of_known_splicesites	FALSE	canonical	3	97	junction_3	514.177634675022	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAATCTTGGGTTTAGG	NA	False	NA	-20	True	AATAAA	-23	NA	32253488	32165062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32165786_32226649_32226768_32230149_32230283_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002083.14_1	chr7	+	1827	4	FSM	ENSMUSG00000002083.14	ENSMUST00000002152.13	1814	4	-17	4	-17	-4	multi-exon	FALSE	canonical	3	119	junction_1	49.2769948578667	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACACTCTTTTTGTTAGC	NA	False	NA	22	True	AATAAA	-15	NA	16043523	16052126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16043787_16046050_16046340_16047551_16047743_16051042
ENSMUSG00000002083.14_11	chr7	+	1208	2	FSM	ENSMUSG00000002083.14	ENSMUST00000147267.2	881	2	172	-499	172	-9	multi-exon	FALSE	canonical	3	237	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTGAACACTCTTTTTG	1004	False	NA	17	True	AATAAA	-10	NA	16047613	16052121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16047743_16051042
ENSMUSG00000002083.14_7	chr7	+	1706	4	NIC	ENSMUSG00000002083.14	novel	485	3	NA	NA	-60	-6	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	92.4589999224882	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAACACTCTTTTTGTTA	NA	False	NA	20	True	AATAAA	-13	NA	16044319	16052124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_16044464_16046050_16046340_16047551_16047743_16051042
ENSMUSG00000002100.16_0	chr2	+	3369	23	NIC	ENSMUSG00000002100.16	novel	4134	34	NA	NA	4641	-1	intron_retention	FALSE	canonical	0	0	junction_2	2.53243423221529	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGGGTTGATGTCTCCT	NA	False	NA	NA	False	AATAAA	-15	NA	90953129	90966854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90953364_90954230_90954364_90954619_90954854_90954931_90955038_90955121_90955289_90955603_90955770_90956290_90956398_90956608_90956639_90958997_90959138_90959344_90959426_90961131_90961292_90961717_90961823_90961908_90962098_90962983_90963119_90963197_90963366_90964515_90964605_90964758_90964955_90965134_90965275_90965436_90965597_90965691_90965829_90966080_90966268_90966448_90966487_90966587
ENSMUSG00000002100.16_1	chr2	+	3253	23	NIC	ENSMUSG00000002100.16	novel	4134	34	NA	NA	4649	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	2.43425960709016	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGGTTGATGTCTCCTG	NA	False	NA	NA	False	AATAAA	-16	NA	90953137	90966855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90953364_90954230_90954364_90954728_90954854_90954931_90955038_90955121_90955289_90955603_90955770_90956290_90956398_90956608_90956639_90958997_90959138_90959344_90959426_90961131_90961292_90961717_90961823_90961908_90962098_90962983_90963119_90963197_90963366_90964515_90964605_90964758_90964955_90965134_90965275_90965436_90965597_90965691_90965829_90966080_90966268_90966448_90966487_90966587
ENSMUSG00000002102.16_0	chr2	+	1568	12	FSM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	68	0	-18	0	multi-exon	FALSE	canonical	3	1724	junction_1	113.356309451931	1748	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	18	True	AATAAA	-19	NA	90884421	90889777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
ENSMUSG00000002103.17_10	chr2	+	2013	1	ISM	ENSMUSG00000002103.17	ENSMUST00000002172.14	4656	11	9173	4	9154	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACCTGGTAAAGACTTAT	6727	False	NA	4	True	NA	NA	NA	91042426	91044439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_91042400_91044400
ENSMUSG00000002103.17_2	chr2	+	4628	11	FSM	ENSMUSG00000002103.17	ENSMUST00000239169.2	4652	11	5	19	5	-19	multi-exon	FALSE	canonical	3	45	junction_7	11.5134703716994	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCATGAACCACCACCACCA	5065	False	NA	-12	True	NA	NA	NA	91033261	91044423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91033394_91033945_91034042_91034584_91034672_91036100_91036254_91036354_91036454_91036532_91036623_91037061_91037195_91038161_91038245_91038384_91038492_91038605_91038782_91040951
ENSMUSG00000002103.17_6	chr2	+	3125	10	FSM	ENSMUSG00000002103.17	ENSMUST00000124131.2	3124	10	-1	0	-1	0	multi-exon	FALSE	canonical	3	45	junction_6	11.063230167017	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCACTGTCTCCAAGATA	5071	False	NA	10	True	AATAAA	-24	NA	91033267	91042487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91033394_91033945_91034042_91034584_91034672_91036100_91036254_91036354_91036454_91036532_91037195_91038161_91038245_91038384_91038492_91038605_91038782_91040951
ENSMUSG00000002104.12_0	chr2	+	1620	8	FSM	ENSMUSG00000002104.12	ENSMUST00000050323.6	1606	8	-14	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	10.5791477608992	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	False	NA	7	True	AATAAA	-15	NA	90865971	90876074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90866334_90866891_90867231_90872198_90872358_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
ENSMUSG00000002104.12_10	chr2	+	2198	7	NIC	ENSMUSG00000002104.12	novel	1606	8	NA	NA	-13	0	intron_retention	FALSE	canonical	3	40	junction_3	11.1865494630332	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	False	NA	7	True	AATAAA	-15	NA	90865951	90876074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90867231_90872198_90872358_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
ENSMUSG00000002104.12_2	chr2	+	1493	7	FSM	ENSMUSG00000002104.12	ENSMUST00000111446.10	1458	7	-32	-3	-25	0	multi-exon	FALSE	canonical	1	5	junction_2	21.4683229174728	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	False	NA	7	True	AATAAA	-15	NA	90865939	90876074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90866334_90866891_90867231_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
ENSMUSG00000002104.12_7	chr2	+	1161	5	FSM	ENSMUSG00000002104.12	ENSMUST00000128008.2	686	5	-227	-248	-227	-1	multi-exon	FALSE	canonical	3	40	junction_1	12.3364297914753	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTAGTGATTCTGACCCT	NA	False	NA	6	True	AATAAA	-14	NA	90872902	90876073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
ENSMUSG00000002104.12_8	chr2	+	732	4	ISM	ENSMUSG00000002104.12	ENSMUST00000128008.2	686	5	281	-246	281	0	3prime_fragment	FALSE	canonical	3	47	junction_1	9.97775303139718	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGCTAGTGATTCTGACC	NA	False	NA	4	True	AATAAA	-12	NA	90873410	90876071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_90873608_90874035_90874090_90875184_90875385_90875790
ENSMUSG00000002104.12_9	chr2	+	521	2	ISM	ENSMUSG00000002104.12	ENSMUST00000128008.2	686	5	2018	-249	2018	0	3prime_fragment	FALSE	canonical	3	71	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	False	NA	7	True	AATAAA	-15	NA	90875147	90876074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_90875385_90875790
ENSMUSG00000002105.16_2	chr2	-	2293	10	FSM	ENSMUSG00000002105.16	ENSMUST00000073575.12	2469	10	175	1	-3	-1	multi-exon	FALSE	canonical	3	29	junction_7	9.55684745788763	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTCTTCCACATACTAG	4342	False	NA	-1	True	AATAAA	-14	NA	90900587	90892136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896046_90896357_90896472_90898775_90899085_90900499
ENSMUSG00000002105.16_21	chr2	-	2285	9	NIC	ENSMUSG00000002105.16	novel	1291	10	NA	NA	-4	-6	combination_of_known_junctions	FALSE	canonical	1	5	junction_5	18.3877506781009	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGGCTGCCTCTTCCACAT	4282	False	NA	-6	True	AATAAA	-9	NA	90900647	90892141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895926_90896085_90896357_90896472_90898775_90899085_90900499
ENSMUSG00000002105.16_3	chr2	-	2226	9	NIC	ENSMUSG00000002105.16	novel	2469	10	NA	NA	5	-2	combination_of_known_junctions	TRUE	canonical	1	5	junction_5	17.0105665690476	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCCTCTTCCACATACTA	4306	False	NA	-2	True	AATAAA	-13	NA	90900623	90892137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895926_90896046_90896357_90896472_90898775_90899085_90900499
ENSMUSG00000002105.16_4	chr2	-	2367	10	FSM	ENSMUSG00000002105.16	ENSMUST00000111436.3	1291	10	7	-1083	7	0	multi-exon	FALSE	canonical	3	19	junction_7	11.8831761976001	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTTCCACATACTAGG	4308	False	NA	0	True	AATAAA	-15	NA	90900621	90892135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896085_90896357_90896472_90898775_90899085_90900499
ENSMUSG00000002105.16_8	chr2	-	761	1	ISM	ENSMUSG00000002105.16	ENSMUST00000079976.10	1884	8	7677	1	1834	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTCTTCCACATACTAG	2445	False	NA	-1	True	AATAAA	-14	NA	90892897	90892136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_90892100_90892900
ENSMUSG00000002107.19_1	chr2	-	2681	14	NIC	ENSMUSG00000002107.19	novel	5470	14	NA	NA	-17	35	combination_of_known_junctions	FALSE	canonical	3	11	junction_4	7.26912901841689	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAAAAGAAA	7836	False	NA	NA	False	NA	NA	NA	6877425	6549582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_6550487_6551852_6552025_6554642_6554787_6558595_6558776_6565481_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227_6726425_6877166
ENSMUSG00000002107.19_2	chr2	-	2683	14	NIC	ENSMUSG00000002107.19	novel	1721	14	NA	NA	-11	31	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	6.4284868971619	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAGAAAAAAGAAAAAAAAA	7842	False	NA	NA	False	NA	NA	NA	6877419	6549586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_6550487_6551852_6552025_6554642_6554787_6558595_6558776_6565469_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227_6726425_6877166
ENSMUSG00000002107.19_3	chr2	-	2930	1	ISM	ENSMUSG00000002107.19	ENSMUST00000002176.13	7718	16	851195	2182	47995	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAATACTTGTTTCTCTCT	345	False	NA	-7	True	ATTAAA	-8	NA	6549616	6546686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_6546700_6549600
ENSMUSG00000002107.19_4	chr2	-	3751	13	NIC	ENSMUSG00000002107.19	novel	5470	14	NA	NA	106	-5	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	9.86118935806202	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATGCAAAAAAAAAAAAAAA	7959	False	NA	NA	False	NA	NA	NA	6877302	6548245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_6550487_6551852_6552025_6558595_6558776_6565481_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227_6726425_6877166
ENSMUSG00000002107.19_5	chr2	-	2425	13	NIC	ENSMUSG00000002107.19	novel	1721	14	NA	NA	103	31	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	9.32142096940637	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAGAAAAAAGAAAAAAAAA	7956	False	NA	NA	False	NA	NA	NA	6877305	6549586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_6550487_6551852_6552025_6558595_6558776_6565469_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227_6726425_6877166
ENSMUSG00000002109.15_1	chr2	-	1797	10	FSM	ENSMUSG00000002109.15	ENSMUST00000028696.5	1557	10	28	-268	6	0	multi-exon	FALSE	canonical	3	56	junction_8	17.7888854188351	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAAAAACCCAAAAGCCC	3025	False	NA	-42	True	AATAAA	-19	NA	91067299	91041932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91064645_91065159_91065297_91067034
ENSMUSG00000002109.15_16	chr2	-	2160	8	NIC	ENSMUSG00000002109.15	novel	2228	9	NA	NA	11	-4	intron_retention	FALSE	canonical	1	4	junction_3	33.8857624668412	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCTAACTAAAAACCCAAAA	3030	False	NA	-46	True	AATAAA	-15	NA	91067294	91041936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_91042358_91042624_91042671_91042794_91042960_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91065297_91067034
ENSMUSG00000002109.15_2	chr2	-	2310	9	FSM	ENSMUSG00000002109.15	ENSMUST00000111352.8	2228	9	-67	-15	8	0	multi-exon	FALSE	canonical	3	65	junction_7	15.7594217850783	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAAAAACCCAAAAGCCC	3027	False	NA	-42	True	AATAAA	-19	NA	91067297	91041932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91065297_91067034
ENSMUSG00000002109.15_3	chr2	-	2028	7	NIC	ENSMUSG00000002109.15	novel	2228	9	NA	NA	5	4	intron_retention	FALSE	canonical	1	4	junction_3	44.2555708985384	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACCCAAAAGCCCAACA	3024	False	NA	-38	True	AATAAA	-23	NA	91067300	91041928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_91042358_91042624_91042671_91042794_91042960_91047397_91047576_91047651_91047752_91064452_91065297_91067034
ENSMUSG00000002109.15_4	chr2	-	2167	8	NIC	ENSMUSG00000002109.15	novel	2228	9	NA	NA	5	0	intron_retention	FALSE	canonical	3	12	junction_6	30.9970373831212	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAAAAACCCAAAAGCCC	3024	False	NA	-42	True	AATAAA	-19	NA	91067300	91041932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91064452_91065297_91067034
ENSMUSG00000002109.15_8	chr2	-	1670	8	ISM	ENSMUSG00000002109.15	ENSMUST00000111352.8	2228	9	2311	-15	757	0	3prime_fragment	FALSE	canonical	3	65	junction_7	16.7746163920979	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAAAAACCCAAAAGCCC	5405	False	NA	-42	True	AATAAA	-19	NA	91064919	91041932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452
ENSMUSG00000002111.9_1	chr2	+	1407	5	FSM	ENSMUSG00000002111.9	ENSMUST00000002180.8	2034	5	618	9	-66	-9	multi-exon	FALSE	canonical	3	17	junction_1	7.28010988928052	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTCCCAGAGAAGTGTC	9235	False	NA	12	True	AGTAAA	-13	NA	90927058	90946092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90927339_90929774_90929872_90943599_90943791_90944589_90944756_90945419
ENSMUSG00000002111.9_2	chr2	+	1149	4	NNC	ENSMUSG00000002111.9	novel	544	4	NA	NA	8986	-8	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	12.9614813968157	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTCCCAGAGAAGTGTCT	NA	False	NA	13	True	AGTAAA	-14	NA	90936110	90946093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_90936229_90943599_90943791_90944589_90944756_90945419
ENSMUSG00000002129.12_0	chr11	+	2955	16	FSM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	27	1938	22	1184	multi-exon	FALSE	canonical	3	694	junction_11	81.820834075979	1611	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACCGAACACTTCTTGG	NA	False	NA	-17	True	NA	NA	NA	4110376	4130603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
ENSMUSG00000002147.19_22	chr10	+	1500	5	ISM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	15394	12	-1020	-12	3prime_fragment	FALSE	canonical	3	216	junction_3	13.3229125944742	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAACAAAATAAATAAT	1054	False	NA	-18	True	AATAAA	-10	NA	127494248	127496814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
ENSMUSG00000002147.19_23	chr10	+	1577	4	ISM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	15394	12	-1020	-12	intron_retention	FALSE	canonical	3	216	junction_3	14.6590889515307	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAACAAAATAAATAAT	1054	False	NA	-18	True	AATAAA	-10	NA	127494248	127496814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127494331_127494497_127494570_127495301_127495368_127495457
ENSMUSG00000002147.19_3	chr10	+	3658	22	FSM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	105	12	89	-12	multi-exon	FALSE	canonical	3	34	junction_1	71.0521510108266	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAACAAAATAAATAAT	2376	False	NA	-18	True	AATAAA	-10	NA	127478959	127496814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127479119_127482759_127482897_127483553_127483693_127483974_127484059_127486564_127486704_127486821_127486875_127487025_127487175_127487818_127487951_127488059_127488249_127488853_127488942_127489075_127489199_127490794_127490888_127491165_127491373_127492792_127492888_127492976_127493114_127493424_127493572_127494065_127494130_127494225_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
ENSMUSG00000002190.14_0	chr8	+	2301	15	FSM	ENSMUSG00000002190.14	ENSMUST00000109831.3	2293	15	-9	1	2	-1	multi-exon	FALSE	canonical	3	23	junction_5	6.81834260787527	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGAGAGCCAAGAGATTC	NA	False	NA	11	True	AATAAA	-17	NA	84116497	84153459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84116730_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84134782_84134865_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
ENSMUSG00000002190.14_4	chr8	+	3909	15	FSM	ENSMUSG00000002190.14	ENSMUST00000002259.13	3902	15	-12	5	-12	-5	multi-exon	TRUE	canonical	3	7	junction_1	9.63756468519016	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATATGTGTGTGTCTTG	NA	False	NA	NA	False	AATAAA	-13	NA	84116483	84155176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84116607_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84134782_84134865_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
ENSMUSG00000002190.14_7	chr8	+	3935	14	NIC	ENSMUSG00000002190.14	novel	2293	15	NA	NA	5	-3	combination_of_known_splicesites	FALSE	canonical	2	2	junction_5	10.4473886208029	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATATGTGTGTGTCTTGCT	NA	False	NA	NA	False	AATAAA	-15	NA	84116500	84155178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_84116730_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
ENSMUSG00000002204.10_0	chr7	+	1362	9	FSM	ENSMUSG00000002204.10	ENSMUST00000002274.10	1560	9	178	20	126	-20	multi-exon	FALSE	canonical	1	2	junction_5	2.82842712474619	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAATTAAAAAAAAAAA	2720	False	NA	NA	False	NA	NA	NA	44221981	44236266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44222114_44230627_44230764_44230844_44230969_44231106_44231226_44231765_44231966_44234422_44234546_44234642_44234788_44235137_44235237_44235982
ENSMUSG00000002205.17_0	chr7	+	1748	15	FSM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	214	7	-9	-7	multi-exon	FALSE	canonical	3	94	junction_1	19.1081775420785	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAAAGTCTGGAGAGTTC	NA	False	NA	9	True	AATAAA	-9	NA	44398050	44426932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44398076_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
ENSMUSG00000002205.17_14	chr7	+	1485	12	ISM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	9373	3	800	-3	3prime_fragment	FALSE	canonical	3	134	junction_2	12.8165698535106	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTGGAGAGTTCAGTG	NA	False	NA	13	True	AATAAA	-13	NA	44407209	44426936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
ENSMUSG00000002205.17_2	chr7	+	3564	14	NIC	ENSMUSG00000002205.17	novel	1969	15	NA	NA	-19	-5	intron_retention	FALSE	canonical	3	94	junction_1	19.8279582658952	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGTCTGGAGAGTTCAG	NA	False	NA	11	True	AATAAA	-11	NA	44398040	44426934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44398076_44401538_44401601_44403239_44403380_44407169_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
ENSMUSG00000002205.17_7	chr7	+	2449	15	NIC	ENSMUSG00000002205.17	novel	761	7	NA	NA	25	-7	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	39.2436788098493	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAAAGTCTGGAGAGTTC	NA	False	NA	9	True	AATAAA	-9	NA	44398095	44426932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44398822_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
ENSMUSG00000002205.17_8	chr7	+	1725	14	ISM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	3700	7	-2	-7	3prime_fragment	FALSE	canonical	3	134	junction_4	12.2624167236856	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAAAGTCTGGAGAGTTC	NA	False	NA	9	True	AATAAA	-9	NA	44401536	44426932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
ENSMUSG00000002210.12_0	chr7	+	2214	14	FSM	ENSMUSG00000002210.12	ENSMUST00000002280.11	2242	14	19	9	19	-9	multi-exon	FALSE	canonical	3	128	junction_3	14.7828462881374	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTGCTCTGGGGTTTG	NA	False	NA	10	True	AATAAA	-10	NA	24099062	24122194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24099317_24102816_24102973_24104951_24105027_24105112_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
ENSMUSG00000002210.12_1	chr7	+	2211	14	NNC	ENSMUSG00000002210.12	novel	2242	14	NA	NA	15	-7	at_least_one_novel_splicesite	TRUE	canonical	3	30	junction_3	34.9034170348701	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGCTCTGGGGTTTGTT	NA	False	NA	12	True	AATAAA	-12	NA	24099058	24122196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_24099317_24102816_24102973_24104951_24105027_24105121_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
ENSMUSG00000002210.12_3	chr7	+	2242	13	NIC	ENSMUSG00000002210.12	novel	2242	14	NA	NA	-26	-7	intron_retention	FALSE	canonical	3	130	junction_4	14.0227988964004	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGCTCTGGGGTTTGTT	NA	False	NA	12	True	AATAAA	-12	NA	24099122	24122196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_24099317_24102816_24102973_24104951_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
ENSMUSG00000002221.12_0	chr5	-	3732	21	FSM	ENSMUSG00000002221.12	ENSMUST00000002291.12	5850	21	143	1975	-12	-1975	multi-exon	FALSE	canonical	0	0	junction_1	176.542771021642	1325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTAGAATTGGGTGATTA	NA	False	NA	-9	True	AATAAA	-11	NA	27996405	27947052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_27947502_27949112_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001_27977623_27980563_27980678_27986419_27986484_27988727_27988772_27993640_27993776_27996196
ENSMUSG00000002222.15_0	chr6	-	5795	9	FSM	ENSMUSG00000002222.15	ENSMUST00000002292.15	6165	9	119	251	119	2	multi-exon	FALSE	canonical	3	172	junction_4	25.5828922328966	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGATACTCTCTGCTTA	NA	False	NA	NA	False	AATAAA	-29	NA	71417502	71365868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_71370173_71371608_71371764_71373835_71373939_71375344_71375511_71376110_71376278_71390233_71390335_71391768_71391904_71406001_71406145_71416981
ENSMUSG00000002222.15_1	chr6	-	4667	10	NIC	ENSMUSG00000002222.15	novel	6165	9	NA	NA	123	3	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	48.3600181764305	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGATACTCTCTGCTTAT	NA	False	NA	NA	False	AATAAA	-30	NA	71417498	71365867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_71368962_71370086_71370173_71371608_71371764_71373835_71373939_71375344_71375511_71376110_71376278_71390233_71390335_71391768_71391904_71406001_71406145_71416981
ENSMUSG00000002222.15_3	chr6	-	2869	1	ISM	ENSMUSG00000002222.15	ENSMUST00000002292.15	6165	9	49118	17	4668	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTAAAAAACTGTTTTT	4830	False	NA	-17	True	ATTAAA	-8	NA	71368503	71365634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_71365600_71368500
ENSMUSG00000002227.16_1	chr3	-	3500	20	ISM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	58	3	-5	-3	3prime_fragment	FALSE	canonical	3	1102	junction_11	86.7727314610285	2084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAAAGCCTCTTGCGTGT	NA	False	NA	-28	True	AAGAAA	-18	NA	104725563	104702154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
ENSMUSG00000002227.16_2	chr3	-	3399	21	NIC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	20	-2	combination_of_known_splicesites	TRUE	canonical	3	106	junction_20	272.054755518076	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAAGCCTCTTGCGTGTG	NA	False	NA	-27	True	AAGAAA	-19	NA	104725597	104702153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725438_104725573
ENSMUSG00000002227.16_6	chr3	-	3442	21	FSM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	16	2	12	-2	multi-exon	FALSE	canonical	3	138	junction_20	265.434944948852	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAAGCCTCTTGCGTGTG	NA	False	NA	-27	True	AAGAAA	-19	NA	104725605	104702153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725473_104725573
ENSMUSG00000002228.8_0	chr3	+	1702	10	FSM	ENSMUSG00000002228.8	ENSMUST00000002298.7	1721	10	15	4	15	-4	multi-exon	TRUE	canonical	3	56	junction_1	13.4200881305638	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACGTTGTGTGTCATTAT	NA	False	NA	NA	False	AATAAA	-10	NA	104688386	104693330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713_104692866_104693017
ENSMUSG00000002228.8_1	chr3	+	1854	9	ISM	ENSMUSG00000002228.8	ENSMUST00000002298.7	1721	10	16	3	16	-3	intron_retention	FALSE	canonical	3	56	junction_1	13.9977676791694	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTTGTGTGTCATTATT	NA	False	NA	NA	False	AATAAA	-11	NA	104688387	104693331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713
ENSMUSG00000002228.8_10	chr3	+	2878	9	NIC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	31	-3	intron_retention	FALSE	canonical	3	74	junction_7	10.7470926301023	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTTGTGTGTCATTATT	NA	False	NA	NA	False	AATAAA	-11	NA	104688402	104693331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713_104692866_104693017
ENSMUSG00000002228.8_11	chr3	+	3231	7	NIC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	31	-5	intron_retention	FALSE	canonical	3	74	junction_6	11.0063113207327	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACGTTGTGTGTCATTA	NA	False	NA	NA	False	AATAAA	-9	NA	104688402	104693329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692336_104692501_104692610_104692713
ENSMUSG00000002228.8_12	chr3	+	3018	8	NIC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	43	-3	intron_retention	FALSE	canonical	3	74	junction_7	10.7551601284107	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTTGTGTGTCATTATT	NA	False	NA	NA	False	AATAAA	-11	NA	104688414	104693331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713
ENSMUSG00000002228.8_9	chr3	+	1649	10	NNC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	16	-5	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_8	22.6949714341098	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACGTTGTGTGTCATTA	NA	False	NA	NA	False	AATAAA	-9	NA	104688387	104693329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692559_104692713_104692866_104693017
ENSMUSG00000002233.14_0	chr3	+	1058	5	FSM	ENSMUSG00000002233.14	ENSMUST00000002303.12	1202	5	142	2	-4	-2	multi-exon	FALSE	canonical	3	201	junction_3	22.8965062837106	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGCAGCTTCCTGTCT	NA	False	NA	11	True	AATAAA	-18	NA	104696345	104701773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_104696400_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUSG00000002233.14_2	chr3	+	1077	5	FSM	ENSMUSG00000002233.14	ENSMUST00000106787.8	959	5	-5	-113	-5	-2	multi-exon	FALSE	canonical	2	16	junction_1	97.4586450757448	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGCAGCTTCCTGTCT	NA	False	NA	11	True	AATAAA	-18	NA	104696344	104701773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_104696418_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUSG00000002233.14_4	chr3	+	1007	4	ISM	ENSMUSG00000002233.14	ENSMUST00000106787.8	959	5	2853	-114	-96	-1	3prime_fragment	FALSE	canonical	3	201	junction_2	25.9615099714943	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCAGCTTCCTGTCTT	NA	False	NA	12	True	AATAAA	-19	NA	104699202	104701774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUSG00000002249.22_0	chr17	-	2376	12	ISM	ENSMUSG00000002249.22	ENSMUST00000154873.9	2775	13	8744	45	-5086	0	3prime_fragment	FALSE	canonical	1	2	junction_4	2.17422922601844	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACAGTTGTGCCATATGC	135	False	NA	NA	False	ATTAAA	-17	NA	28560576	28550689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_28551808_28551924_28552078_28552165_28552307_28552479_28552654_28552764_28552911_28553357_28553420_28553677_28553728_28553872_28554011_28554458_28554471_28555484_28555548_28559127_28559193_28560322
ENSMUSG00000002249.22_1	chr17	-	2566	13	FSM	ENSMUSG00000002249.22	ENSMUST00000156862.3	2585	13	17	2	-15	0	multi-exon	FALSE	canonical	0	0	junction_12	2.49861072509416	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACAGTTGTGCCATATGC	NA	False	NA	NA	False	ATTAAA	-17	NA	28569774	28550689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_28551808_28551924_28552078_28552165_28552307_28552479_28552654_28552764_28552911_28553357_28553420_28553677_28553728_28553872_28554011_28554458_28554471_28555484_28555548_28559127_28559193_28560322_28560575_28569582
ENSMUSG00000002249.22_2	chr17	-	2552	12	NIC	ENSMUSG00000002249.22	novel	3443	12	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	2.83717936987768	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACAGTTGTGCCATATGC	NA	False	NA	NA	False	ATTAAA	-17	NA	28569772	28550689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_28551808_28551924_28552078_28552165_28552307_28552479_28552654_28552764_28552911_28553357_28553420_28553677_28553728_28553872_28554011_28555484_28555548_28559127_28559193_28560322_28560575_28569582
ENSMUSG00000002249.22_3	chr17	-	1292	3	ISM	ENSMUSG00000002249.22	ENSMUST00000154873.9	2775	13	17130	49	2199	-4	3prime_fragment	FALSE	canonical	2	3	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAAGACAGTTGTGCCAT	8521	False	NA	NA	False	ATTAAA	-13	NA	28552190	28550693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_28551808_28551924_28552078_28552165
ENSMUSG00000002249.22_4	chr17	-	2101	8	ISM	ENSMUSG00000002249.22	ENSMUST00000154873.9	2775	13	15159	77	228	-32	3prime_fragment	FALSE	canonical	2	2	junction_4	1.90595200916091	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAATTAAAAAGC	6550	False	NA	NA	False	CATAAA	-42	NA	28554161	28550721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_28551808_28551924_28552078_28552165_28552307_28552479_28552654_28552764_28552911_28553357_28553420_28553677_28553728_28553872
ENSMUSG00000002250.17_14	chr17	+	176	1	FSM	ENSMUSG00000002250.17	ENSMUST00000233383.2	3726	1	3351	199	3351	-199	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAATTAAGGATATTTTT	1580	False	NA	NA	False	NA	NA	NA	28515570	28515746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28515600_28515700
ENSMUSG00000002250.17_2	chr17	+	1479	4	FSM	ENSMUSG00000002250.17	ENSMUST00000123020.9	1433	4	-23	-23	-6	23	multi-exon	FALSE	canonical	2	5	junction_1	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAGGGTTATAATTATA	NA	False	NA	NA	False	NA	NA	NA	28451714	28515378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28451839_28455985_28456070_28505234_28505442_28514314
ENSMUSG00000002250.17_3	chr17	+	3198	8	FSM	ENSMUSG00000002250.17	ENSMUST00000002320.16	3277	8	70	9	-4	-9	multi-exon	FALSE	canonical	2	4	junction_5	2.32115382989599	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGACTTGTAGCCAT	NA	False	NA	17	True	AATAAA	-17	NA	28451743	28520439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28451839_28455985_28456070_28505234_28505442_28514314_28514470_28516059_28516199_28517250_28517454_28517557_28518009_28518575
ENSMUSG00000002250.17_6	chr17	+	1243	1	ISM	ENSMUSG00000002250.17	ENSMUST00000002320.16	3277	8	67523	9	6977	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGACTTGTAGCCAT	5206	False	NA	17	True	AATAAA	-17	NA	28519196	28520439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28519200_28520400
ENSMUSG00000002257.9_0	chr17	+	2218	11	FSM	ENSMUSG00000002257.9	ENSMUST00000002327.6	2277	11	52	7	4	-7	multi-exon	FALSE	canonical	3	110	junction_2	14.7461859475595	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTGCTCCTGCCCTTCC	NA	False	NA	10	True	AATAAA	-15	NA	28426803	28447575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28426913_28435938_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
ENSMUSG00000002257.9_12	chr17	+	1915	9	ISM	ENSMUSG00000002257.9	ENSMUST00000002327.6	2277	11	9869	14	614	-14	3prime_fragment	FALSE	canonical	3	124	junction_3	13.5825025308299	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTGCCCACTGCTCCTG	NA	False	NA	3	True	AATAAA	-8	NA	28436620	28447568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
ENSMUSG00000002257.9_23	chr17	+	2031	10	ISM	ENSMUSG00000002257.9	ENSMUST00000002327.6	2277	11	9265	7	10	-7	3prime_fragment	FALSE	canonical	3	110	junction_1	15.2542242682049	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTGCTCCTGCCCTTCC	NA	False	NA	10	True	AATAAA	-15	NA	28436016	28447575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
ENSMUSG00000002265.18_0	chr7	-	8672	9	FSM	ENSMUSG00000002265.18	ENSMUST00000051209.11	8694	9	1	21	-1	-21	multi-exon	FALSE	canonical	3	81	junction_3	8.98262211161084	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAGTTAAAAATAAGATA	NA	False	NA	NA	False	AATAAA	-2	NA	6733419	6706911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_6714731_6714849_6714943_6715671_6715775_6719052_6719157_6720111_6720196_6720797_6720888_6721424_6721556_6729488_6729574_6733256
ENSMUSG00000002265.18_1	chr7	-	4045	1	ISM	ENSMUSG00000002265.18	ENSMUST00000239104.2	8986	9	22460	25	15254	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAGTTAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	6710960	6706915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_6706900_6711000
ENSMUSG00000002274.14_0	chr17	-	4961	6	Fusion	ENSMUSG00000002274.14_ENSMUSG00000057411.10	novel	987	5	NA	NA	-6	0	intron_retention	FALSE	canonical	3	84	junction_4	68.0311693270077	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTGTTTGTTCCAGGAA	5887	False	NA	-2	True	AATAAA	-22	NA	26016063	26009474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_-_26009753_26009906_26009958_26010319_26014266_26014347_26014408_26015214_26015616_26015838
ENSMUSG00000002274.14_10	chr17	-	1208	3	NIC	ENSMUSG00000002274.14	novel	2751	4	NA	NA	-11	-4	intron_retention	FALSE	canonical	3	84	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCCACTGTAGTCATGG	5910	False	NA	-6	True	NA	NA	NA	26016040	26013802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26014408_26015214_26015616_26015838
ENSMUSG00000002274.14_11	chr17	-	2140	2	FSM	ENSMUSG00000002274.14	ENSMUST00000237849.2	1175	2	-969	4	5	-4	multi-exon	FALSE	canonical	3	97	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCCACTGTAGTCATGG	5926	False	NA	-6	True	NA	NA	NA	26016024	26013802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26014266_26014347
ENSMUSG00000002274.14_2	chr17	-	1149	4	FSM	ENSMUSG00000002274.14	ENSMUST00000165838.9	2751	4	-6	1608	-6	-4	multi-exon	FALSE	canonical	3	84	junction_2	5.71547606649408	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCCACTGTAGTCATGG	5887	False	NA	-6	True	NA	NA	NA	26016063	26013802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26014266_26014347_26014408_26015214_26015616_26015838
ENSMUSG00000002274.14_4	chr17	-	1303	4	FSM	ENSMUSG00000002274.14	ENSMUST00000235294.2	1198	4	-33	-72	-5	-4	multi-exon	FALSE	canonical	1	3	junction_2	43.8482230730809	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCCACTGTAGTCATGG	5888	False	NA	-6	True	NA	NA	NA	26016062	26013802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26014266_26014347_26014408_26015059_26015616_26015838
ENSMUSG00000002274.14_6	chr17	-	685	3	FSM	ENSMUSG00000002274.14	ENSMUST00000236963.2	1010	3	321	4	-321	-4	multi-exon	FALSE	canonical	3	84	junction_2	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCCACTGTAGTCATGG	6574	False	NA	-6	True	NA	NA	NA	26015376	26013802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26014266_26014347_26014408_26015214
ENSMUSG00000002279.20_0	chr17	+	1737	11	FSM	ENSMUSG00000002279.20	ENSMUST00000116641.9	1858	11	15	106	5	-3	multi-exon	FALSE	canonical	1	15	junction_2	37.5467708331888	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCGCTTCTCTACCTATAC	NA	False	NA	1	True	AATAAA	-12	NA	25798165	25881694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ENSMUSG00000002279.20_2	chr17	+	1730	10	NIC	ENSMUSG00000002279.20	novel	1861	11	NA	NA	5	-9	combination_of_known_splicesites	TRUE	canonical	3	18	junction_2	34.0362914519556	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACCAACCGCTTCTCTAC	NA	False	NA	-5	True	AATAAA	-6	NA	25798155	25881688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25798354_25804516_25804827_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ENSMUSG00000002279.20_3	chr17	+	1725	10	NNC	ENSMUSG00000002279.20	novel	1861	11	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	39.1949858219166	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCGCTTCTCTACCTATAC	NA	False	NA	1	True	AATAAA	-12	NA	25798170	25881694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_25798354_25804516_25804831_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ENSMUSG00000002280.12_0	chr17	+	1983	11	FSM	ENSMUSG00000002280.12	ENSMUST00000002350.11	2555	11	31	541	0	0	multi-exon	FALSE	canonical	3	237	junction_8	20.6145579627602	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCCACTGTGTGTCTG	6951	False	NA	6	True	AATAAA	-18	NA	25992780	26001765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000820_26000989
ENSMUSG00000002280.12_1	chr17	+	2276	10	NIC	ENSMUSG00000002280.12	novel	2062	11	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	241	junction_4	18.6368809979925	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCACTGTGTGTCTGGTAC	6950	False	NA	10	True	AATAAA	-22	NA	25992779	26001769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_26000353_26000661_26000820_26000989
ENSMUSG00000002280.12_3	chr17	+	1889	11	NIC	ENSMUSG00000002280.12	novel	2555	11	NA	NA	1	17	combination_of_known_junctions	FALSE	canonical	3	24	junction_10	76.6329563569095	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACACTGGGCCTTTCAAA	6952	False	NA	28	True	AATAAA	-40	NA	25992781	26001787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000705_26000989
ENSMUSG00000002289.17_1	chr17	-	1592	7	FSM	ENSMUSG00000002289.17	ENSMUST00000002360.17	3308	7	560	1156	273	2	multi-exon	FALSE	canonical	3	124	junction_1	6.14862224856557	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACATTTTGTTCTCTGTT	89	False	NA	-9	True	AATAAA	-10	NA	34000244	33993879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999622_33999756_33999868_34000036
ENSMUSG00000002297.17_0	chr5	-	673	1	ISM	ENSMUSG00000002297.17	ENSMUST00000002368.16	2401	12	24996	39	2621	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCCTGAGAATAAAAATGA	NA	False	NA	NA	False	AATAAA	-21	NA	8447684	8447011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_8447000_8447700
ENSMUSG00000002297.17_3	chr5	-	2413	12	FSM	ENSMUSG00000002297.17	ENSMUST00000171808.8	2402	12	-14	3	-14	-3	multi-exon	FALSE	canonical	3	396	junction_3	47.2513937876549	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTCCTGAGAATAAAAAT	NA	False	NA	NA	False	AATAAA	-19	NA	8472730	8447013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_8448163_8449687_8449813_8453079_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
ENSMUSG00000002297.17_4	chr5	-	2402	12	FSM	ENSMUSG00000002297.17	ENSMUST00000002368.16	2401	12	-42	41	-6	-3	multi-exon	FALSE	canonical	3	32	junction_5	130.994164276048	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTCCTGAGAATAAAAAT	NA	False	NA	NA	False	AATAAA	-19	NA	8472722	8447013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_8448163_8449687_8449813_8453079_8453192_8453611_8453741_8454870_8454914_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
ENSMUSG00000002307.17_11	chr17	+	2618	7	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	20	2	intron_retention	FALSE	canonical	3	546	junction_5	71.9320667173009	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTATTCTTTCCTTTACT	5642	False	NA	6	True	AATAAA	-17	NA	34128491	34134558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34133037_34134316
ENSMUSG00000002307.17_6	chr17	+	2503	8	FSM	ENSMUSG00000002307.17	ENSMUST00000079421.15	2581	8	72	6	19	2	multi-exon	FALSE	canonical	3	546	junction_5	66.597787546753	925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTATTCTTTCCTTTACT	5641	False	NA	6	True	AATAAA	-17	NA	34128490	34134558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
ENSMUSG00000002307.17_7	chr17	+	2547	8	NIC	ENSMUSG00000002307.17	novel	2673	8	NA	NA	-30	2	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	220.781728022433	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTATTCTTTCCTTTACT	5695	False	NA	6	True	AATAAA	-17	NA	34128544	34134558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_34128671_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
ENSMUSG00000002308.17_0	chr17	+	1161	5	FSM	ENSMUSG00000002308.17	ENSMUST00000002379.15	2209	5	27	1021	15	0	multi-exon	FALSE	canonical	3	326	junction_3	13.0072095393286	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTAGCCTGTTT	7020	False	NA	23	True	ATTAAA	-16	NA	34062091	34067727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34062266_34064989_34065116_34066468_34066700_34066990_34067153_34067259
ENSMUSG00000002308.17_7	chr17	+	1205	5	FSM	ENSMUSG00000002308.17	ENSMUST00000087559.8	1191	5	-14	0	-14	0	multi-exon	FALSE	canonical	3	6	junction_1	143.673240375513	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGCCTCTAGCCTGT	7314	False	NA	21	True	ATTAAA	-14	NA	34062385	34067725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34062606_34064989_34065116_34066468_34066700_34066990_34067153_34067259
ENSMUSG00000002319.17_11	chr14	-	3468	30	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	-10	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_28	95.3179422093	74	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCATACTATAAGGAAGC	9788	False	NA	-16	True	AATAAA	-41	NA	55873098	55863185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866529_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
ENSMUSG00000002319.17_2	chr14	-	3468	30	FSM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	49	329	-4	-5	multi-exon	FALSE	canonical	0	0	junction_28	76.4571487859417	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCATACTATAAGGAAGC	9794	False	NA	-16	True	AATAAA	-41	NA	55873092	55863185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
ENSMUSG00000002320.16_0	chr14	-	2470	5	FSM	ENSMUSG00000002320.16	ENSMUST00000002391.15	2382	5	-4	-84	-4	-8	multi-exon	FALSE	canonical	3	260	junction_2	41.5060236592232	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAAGGATCCTGTCGT	5202	False	NA	40	True	AATAAA	-8	NA	55880801	55873432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050
ENSMUSG00000002320.16_22	chr14	-	2297	6	NIC	ENSMUSG00000002320.16	novel	2164	6	NA	NA	-5	-8	combination_of_known_junctions	FALSE	canonical	2	29	junction_5	125.802384715076	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAAGGATCCTGTCGT	5201	False	NA	40	True	AATAAA	-8	NA	55880802	55873432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880586
ENSMUSG00000002320.16_8	chr14	-	2247	6	FSM	ENSMUSG00000002320.16	ENSMUST00000120041.8	2164	6	-94	11	-5	-8	multi-exon	FALSE	canonical	3	29	junction_5	125.802384715076	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAAGGATCCTGTCGT	5201	False	NA	40	True	AATAAA	-8	NA	55880802	55873432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880636
ENSMUSG00000002324.9_0	chr14	+	2310	19	ISM	ENSMUSG00000002324.9	ENSMUST00000002395.8	2184	20	-34	4	-34	-4	intron_retention	FALSE	canonical	3	23	junction_6	6.67337625323823	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGACTTTGCCTCTTTTTTT	1294	False	NA	5	True	ATTAAA	-17	NA	55855459	55862848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55855811_55856002_55856116_55856198_55856268_55856354_55856498_55856577_55856654_55857036_55857158_55858691_55858777_55859671_55859752_55859883_55860020_55860101_55860175_55860250_55860343_55860620_55860671_55860953_55861092_55861377_55861445_55861532_55861700_55861805_55861855_55862179_55862244_55862341_55862459_55862529
ENSMUSG00000002324.9_1	chr14	+	2049	20	FSM	ENSMUSG00000002324.9	ENSMUST00000002395.8	2184	20	129	6	129	-6	multi-exon	FALSE	canonical	3	23	junction_6	6.49738920505725	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGACTTTGCCTCTTTTT	1457	False	NA	3	True	ATTAAA	-15	NA	55855622	55862846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55855811_55856002_55856116_55856198_55856268_55856354_55856498_55856577_55856654_55857036_55857158_55858691_55858777_55859671_55859752_55859883_55860020_55860101_55860175_55860250_55860343_55860620_55860671_55860953_55861092_55861377_55861445_55861532_55861700_55861805_55861855_55862179_55862244_55862341_55862459_55862529_55862637_55862732
ENSMUSG00000002325.16_1	chr14	+	2245	9	FSM	ENSMUSG00000002325.16	ENSMUST00000130697.8	2459	9	208	6	208	-3	multi-exon	FALSE	canonical	3	21	junction_1	14.5086181285469	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACCTTGGTCATGTGG	NA	False	NA	3	True	NA	NA	NA	55841649	55847481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55841701_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
ENSMUSG00000002325.16_13	chr14	+	3173	8	NIC	ENSMUSG00000002325.16	novel	2459	9	NA	NA	185	-3	intron_retention	FALSE	canonical	3	21	junction_1	15.4629247174112	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACCTTGGTCATGTGG	NA	False	NA	3	True	NA	NA	NA	55841626	55847481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55841701_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55845313_55846141_55846258_55846377
ENSMUSG00000002325.16_3	chr14	+	2299	10	FSM	ENSMUSG00000002325.16	ENSMUST00000134863.8	2959	10	653	7	239	-4	multi-exon	TRUE	canonical	1	2	junction_1	18.2337361997608	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTACCTTGGTCATGTG	NA	False	NA	2	True	NA	NA	NA	55841680	55847480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55841701_55841924_55842011_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
ENSMUSG00000002325.16_4	chr14	+	2219	9	ISM	ENSMUSG00000002325.16	ENSMUST00000134863.8	2959	10	958	6	-48	-3	3prime_fragment	FALSE	canonical	3	18	junction_1	14.9994791576241	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACCTTGGTCATGTGG	NA	False	NA	3	True	NA	NA	NA	55841985	55847481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55842011_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
ENSMUSG00000002325.16_5	chr14	+	2189	8	ISM	ENSMUSG00000002325.16	ENSMUST00000138037.2	2343	9	478	6	478	-3	3prime_fragment	FALSE	canonical	3	25	junction_4	13.6993966796993	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACCTTGGTCATGTGG	NA	False	NA	3	True	NA	NA	NA	55842513	55847481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
ENSMUSG00000002325.16_6	chr14	+	2352	9	FSM	ENSMUSG00000002325.16	ENSMUST00000138037.2	2343	9	-15	6	-13	-3	multi-exon	FALSE	canonical	0	0	junction_1	18.7945304543636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACCTTGGTCATGTGG	NA	False	NA	3	True	NA	NA	NA	55842020	55847481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55842179_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
ENSMUSG00000002325.16_9	chr14	+	1816	5	ISM	ENSMUSG00000002325.16	ENSMUST00000138037.2	2343	9	1677	7	436	-4	3prime_fragment	FALSE	canonical	3	25	junction_1	17.4427635425124	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTACCTTGGTCATGTG	NA	False	NA	2	True	NA	NA	NA	55843712	55847480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
ENSMUSG00000002326.7_0	chr14	+	1480	10	FSM	ENSMUSG00000002326.7	ENSMUST00000002397.7	1993	10	54	459	31	425	multi-exon	TRUE	canonical	3	97	junction_1	15.6828127988557	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGCTTAGACGTTCTTC	NA	False	NA	18	True	ATTAAA	-19	NA	55909745	55916198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55909842_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
ENSMUSG00000002326.7_17	chr14	+	1480	10	NIC	ENSMUSG00000002326.7	novel	773	7	NA	NA	14	425	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	39.4658783705058	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGCTTAGACGTTCTTC	NA	False	NA	18	True	ATTAAA	-19	NA	55909853	55916198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55909950_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
ENSMUSG00000002326.7_20	chr14	+	765	4	ISM	ENSMUSG00000002326.7	ENSMUST00000002397.7	1993	10	4756	459	34	425	3prime_fragment	FALSE	canonical	3	126	junction_1	15.2970585407784	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGCTTAGACGTTCTTC	NA	False	NA	18	True	ATTAAA	-19	NA	55914447	55916198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55914492_55914662_55914706_55915327_55915488_55915680
ENSMUSG00000002326.7_9	chr14	+	1287	8	NIC	ENSMUSG00000002326.7	novel	1993	10	NA	NA	35	425	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	49.6008558188181	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGCTTAGACGTTCTTC	NA	False	NA	18	True	ATTAAA	-19	NA	55909749	55916198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55909842_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914662_55914706_55915327_55915488_55915680
ENSMUSG00000002329.8_0	chr14	-	1707	5	FSM	ENSMUSG00000002329.8	ENSMUST00000226659.2	1730	5	22	1	1	-1	multi-exon	FALSE	canonical	3	428	junction_3	25.3673017879316	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAAGGAAAGACAATTTT	2364	False	NA	-24	True	AATAAA	-13	NA	55897886	55895351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897686_55897794
ENSMUSG00000002329.8_1	chr14	-	1637	6	FSM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	76	20	-2	-5	multi-exon	FALSE	canonical	3	347	junction_4	50.5750926840476	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGTGAAAAGGAAAGACAA	2361	False	NA	-28	True	AATAAA	-9	NA	55897889	55895355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624_55897686_55897794
ENSMUSG00000002332.17_1	chr14	-	1394	9	FSM	ENSMUSG00000002332.17	ENSMUST00000002403.10	1477	9	81	2	-10	-2	multi-exon	FALSE	canonical	3	126	junction_7	15.4833580014156	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGTGAGTTCTCATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	55983066	55976478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55976878_55977008_55977090_55977392_55977463_55978183_55978331_55978639_55978773_55980910_55980991_55981114_55981259_55982374_55982546_55982897
ENSMUSG00000002332.17_4	chr14	-	202	1	ISM	ENSMUSG00000002332.17	ENSMUST00000155969.8	510	2	437	2	437	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGTGAGTTCTCATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	55976680	55976478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55976500_55976700
ENSMUSG00000002342.18_0	chr8	+	2080	11	FSM	ENSMUSG00000002342.18	ENSMUST00000182980.8	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	59.2504008425259	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	5869	False	NA	7	True	AATAAA	-17	NA	70625057	70635500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70625091_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ENSMUSG00000002342.18_15	chr8	+	2152	11	ISM	ENSMUSG00000002342.18	ENSMUST00000002413.15	3018	12	1897	831	-1	0	3prime_fragment	FALSE	canonical	3	184	junction_1	15.5935884260166	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	7763	False	NA	7	True	AATAAA	-17	NA	70626951	70635500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70627057_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ENSMUSG00000002342.18_30	chr8	+	2048	10	ISM	ENSMUSG00000002342.18	ENSMUST00000182980.8	2080	11	4436	0	-1	0	3prime_fragment	FALSE	canonical	3	195	junction_4	12.2474487139159	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	NA	False	NA	7	True	AATAAA	-17	NA	70629493	70635500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ENSMUSG00000002342.18_5	chr8	+	2172	12	FSM	ENSMUSG00000002342.18	ENSMUST00000002413.15	3018	12	15	831	1	0	multi-exon	FALSE	canonical	3	91	junction_1	38.6768771547844	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	5881	False	NA	7	True	AATAAA	-17	NA	70625069	70635500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70625091_70626952_70627057_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ENSMUSG00000002343.12_1	chr8	-	2010	8	NIC	ENSMUSG00000002343.12	novel	2263	8	NA	NA	34	-17	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	30.2722341967901	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAACAAACAAACAAAT	5042	False	NA	-43	True	NA	NA	NA	70686742	70672864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686595
ENSMUSG00000002343.12_12	chr8	-	2788	7	NIC	ENSMUSG00000002343.12	novel	2263	8	NA	NA	-6	-9	intron_retention	FALSE	canonical	3	75	junction_1	11.231157059221	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAACAAATAAATAAGT	5002	False	NA	-35	True	NA	NA	NA	70686782	70672856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70673528_70674755_70674894_70675167_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
ENSMUSG00000002343.12_2	chr8	-	1868	7	ISM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	3059	39	2719	-13	3prime_fragment	FALSE	canonical	3	72	junction_3	11.8133634311129	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAACAAATAAAT	7727	False	NA	-39	True	NA	NA	NA	70684057	70672860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929
ENSMUSG00000002343.12_5	chr8	-	1950	8	FSM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	274	39	-66	-13	multi-exon	FALSE	canonical	3	72	junction_3	11.6741472616082	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAACAAATAAAT	4942	False	NA	-39	True	NA	NA	NA	70686842	70672860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
ENSMUSG00000002343.12_8	chr8	-	1367	5	ISM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	32	3260	15	-246	5prime_fragment	FALSE	canonical	3	75	junction_4	11.8822346383161	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTTAGGGTCGTGGTTCT	4700	False	NA	NA	False	AATGAA	-15	NA	70687084	70676081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
ENSMUSG00000002345.19_0	chr8	+	1202	6	FSM	ENSMUSG00000002345.19	ENSMUST00000002418.15	810	6	215	-607	1	544	multi-exon	TRUE	canonical	3	86	junction_5	44.6183818621877	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGACTTCAGCTGAGCC	8828	False	NA	NA	False	AATAAA	-22	NA	70592363	70600513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70599739
ENSMUSG00000002345.19_1	chr8	+	758	4	FSM	ENSMUSG00000002345.19	ENSMUST00000123976.2	756	4	7	-9	1	-5	multi-exon	FALSE	canonical	3	180	junction_1	5.79271573232759	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGCCAGCCTTTGACCA	8828	False	NA	20	True	AATAAA	-20	NA	70592363	70598194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673
ENSMUSG00000002345.19_3	chr8	+	1795	5	ISM	ENSMUSG00000002345.19	ENSMUST00000002418.15	810	6	214	0	0	0	intron_retention	FALSE	canonical	3	111	junction_4	33.5745439283991	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACCGTCTCTTTCCATG	8827	False	NA	17	True	AATACA	-11	NA	70592362	70599906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460
ENSMUSG00000002346.17_16	chr8	-	3112	9	NNC	ENSMUSG00000002346.17	novel	3081	9	NA	NA	24	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.6389614154766	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCTTCTTACTTCTTCA	NA	False	NA	NA	False	AATAAA	-13	NA	70664931	70636989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_70637882_70637941_70639427_70640949_70641102_70641482_70641600_70642060_70642228_70642712_70642739_70644510_70644617_70646773_70646887_70664877
ENSMUSG00000002346.17_3	chr8	-	3100	9	FSM	ENSMUSG00000002346.17	ENSMUST00000063788.8	3081	9	-19	0	-19	0	multi-exon	TRUE	non_canonical	0	0	junction_1	10.6389614154766	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCTTCTTACTTCTTCA	NA	False	NA	NA	False	AATAAA	-13	NA	70664925	70636989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70637876_70637941_70639427_70640949_70641102_70641482_70641600_70642060_70642228_70642712_70642739_70644510_70644617_70646773_70646887_70664877
ENSMUSG00000002346.17_7	chr8	-	3097	9	NNC	ENSMUSG00000002346.17	novel	3081	9	NA	NA	-21	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.6389614154766	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATCTCCTGCTTCTTAC	NA	False	NA	NA	False	AATAAA	-6	NA	70664927	70636996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_70637878_70637941_70639427_70640949_70641102_70641482_70641600_70642060_70642228_70642712_70642739_70644510_70644617_70646773_70646887_70664877
ENSMUSG00000002346.17_9	chr8	-	3106	9	NNC	ENSMUSG00000002346.17	novel	3081	9	NA	NA	-23	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.6389614154766	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGCTTCTTACTTCTT	NA	False	NA	NA	False	AATAAA	-11	NA	70664929	70636991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_70637880_70637941_70639427_70640949_70641102_70641482_70641600_70642060_70642228_70642712_70642739_70644510_70644617_70646773_70646887_70664877
ENSMUSG00000002365.11_0	chr17	+	3306	18	FSM	ENSMUSG00000002365.11	ENSMUST00000002436.11	3331	18	16	9	-7	-9	multi-exon	FALSE	canonical	3	159	junction_6	26.0644662593364	371	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAACTGTACAGCAGATT	NA	False	NA	NA	False	AATAAA	-8	NA	5891619	5982220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_5891822_5937271_5937359_5940349_5940425_5942048_5942175_5949601_5949771_5952638_5952790_5955163_5955249_5958628_5958755_5958856_5958975_5968654_5968786_5970345_5970450_5970844_5970949_5972404_5972483_5974879_5974957_5976346_5976437_5977480_5977596_5978479_5978572_5980844
ENSMUSG00000002372.10_0	chr17	+	2354	16	FSM	ENSMUSG00000002372.10	ENSMUST00000002445.10	2373	16	12	7	3	-7	multi-exon	FALSE	canonical	3	371	junction_2	28.8962896503263	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAAGCCCCAGACTCTT	NA	False	NA	NA	False	ATTAAA	-7	NA	56980369	57018757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ENSMUSG00000002372.10_1	chr17	+	2552	17	FSM	ENSMUSG00000002372.10	ENSMUST00000233319.2	2567	17	8	7	-3	-7	multi-exon	FALSE	canonical	3	89	junction_2	111.513574706176	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAAGCCCCAGACTCTT	NA	False	NA	NA	False	ATTAAA	-7	NA	56980372	57018757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56980412_56993005_56993062_56999520_56999722_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ENSMUSG00000002379.8_0	chr17	+	505	4	FSM	ENSMUSG00000002379.8	ENSMUST00000002452.8	545	4	40	0	9	0	multi-exon	FALSE	canonical	3	2627	junction_1	54.2975342186201	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGTCTTAAAGGCAGG	NA	False	NA	18	True	AATAAA	-18	NA	57024806	57029137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57024943_57028034_57028128_57028318_57028442_57028984
ENSMUSG00000002379.8_4	chr17	+	458	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233832.2	493	4	31	4	16	0	multi-exon	FALSE	canonical	3	181	junction_2	1185.6477835625	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGTCTTAAAGGCAGG	NA	False	NA	18	True	AATAAA	-18	NA	57024813	57029137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57024943_57028034_57028128_57028358_57028442_57028984
ENSMUSG00000002384.3_0	chr4	+	2966	7	FSM	ENSMUSG00000002384.3	ENSMUST00000002457.2	2940	7	-29	3	-29	-3	multi-exon	FALSE	canonical	2	3	junction_1	4.18993502999218	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTGCTTTTGGTCATGGT	87	False	NA	NA	False	NA	NA	NA	122998928	123019881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_122999469_123008360_123008551_123008938_123009088_123015678_123015874_123016308_123016389_123016739_123016851_123018180
ENSMUSG00000002393.15_0	chr8	-	2203	4	FSM	ENSMUSG00000002393.15	ENSMUST00000002466.9	2218	4	15	0	15	0	multi-exon	FALSE	canonical	3	125	junction_2	9.56846672960488	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGTCAGCCTCTGCTTT	NA	False	NA	-8	True	AATAAA	-12	NA	71834589	71826770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71827399_71828392_71828918_71831032_71831128_71833634
ENSMUSG00000002393.15_2	chr8	-	3203	3	NIC	ENSMUSG00000002393.15	novel	2218	4	NA	NA	9	0	intron_retention	FALSE	canonical	3	125	junction_1	11	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGTCAGCCTCTGCTTT	NA	False	NA	-8	True	AATAAA	-12	NA	71834595	71826770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71828918_71831032_71831128_71833634
ENSMUSG00000002393.15_6	chr8	-	2933	4	NIC	ENSMUSG00000002393.15	novel	2218	4	NA	NA	-21	0	intron_retention	FALSE	canonical	2	6	junction_1	61.937244225282	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGTCAGCCTCTGCTTT	NA	False	NA	-8	True	AATAAA	-12	NA	71834571	71826770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71828147_71828392_71828918_71831032_71831128_71833634
ENSMUSG00000002395.15_0	chr8	+	980	9	FSM	ENSMUSG00000002395.15	ENSMUST00000110054.8	973	9	-15	8	-15	-5	multi-exon	FALSE	canonical	3	188	junction_1	224.605626599157	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAACCCACATGTCTTC	NA	False	NA	14	True	AATAAA	-15	NA	71819570	71822368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUSG00000002395.15_25	chr8	+	747	7	ISM	ENSMUSG00000002395.15	ENSMUST00000019169.8	854	8	378	3	-46	0	3prime_fragment	FALSE	canonical	3	658	junction_5	82.6975748670352	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCACATGTCTTCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	71820238	71822373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUSG00000002395.15_26	chr8	+	735	6	NIC	ENSMUSG00000002395.15	novel	1000	8	NA	NA	-52	-5	combination_of_known_splicesites	FALSE	canonical	2	7	junction_3	339.251293291566	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAACCCACATGTCTTC	NA	False	NA	14	True	AATAAA	-15	NA	71820232	71822368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_71820338_71820413_71820493_71820602_71820756_71821493_71821522_71821775_71821948_71822170
ENSMUSG00000002395.15_28	chr8	+	1001	6	NIC	ENSMUSG00000002395.15	novel	1064	9	NA	NA	-46	0	intron_retention	FALSE	canonical	3	802	junction_4	38.206805676476	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCACATGTCTTCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	71820238	71822373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821948_71822170
ENSMUSG00000002395.15_5	chr8	+	843	8	FSM	ENSMUSG00000002395.15	ENSMUST00000019169.8	854	8	7	4	7	-1	multi-exon	FALSE	canonical	3	608	junction_1	107.997165495683	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCCACATGTCTTCAGTG	NA	False	NA	18	True	AATAAA	-19	NA	71819867	71822372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUSG00000002396.9_1	chr8	+	1262	3	ISM	ENSMUSG00000002396.9	ENSMUST00000002469.9	1611	4	-41	533	0	201	intron_retention	FALSE	canonical	3	42	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGTGCAGCTACCTAA	NA	False	NA	11	True	AGTAAA	-16	NA	71823941	71825800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71824630_71825111_71825278_71825392
ENSMUSG00000002396.9_2	chr8	+	1844	1	NIC	ENSMUSG00000002396.9	novel	2179	3	NA	NA	12	198	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTACTGTGTGCAGCTACC	NA	False	NA	8	True	AGTAAA	-13	NA	71823953	71825797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_71824000_71825800
ENSMUSG00000002396.9_3	chr8	+	1078	4	FSM	ENSMUSG00000002396.9	ENSMUST00000002469.9	1611	4	1	532	1	202	multi-exon	FALSE	canonical	3	42	junction_2	9.2736184954957	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTGTGCAGCTACCTAAA	NA	False	NA	12	True	AGTAAA	-17	NA	71823983	71825801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71824630_71825111_71825278_71825392_71825447_71825589
ENSMUSG00000002396.9_4	chr8	+	910	3	FSM	ENSMUSG00000002396.9	ENSMUST00000110051.2	2179	3	43	1226	2	201	multi-exon	FALSE	canonical	3	32	junction_1	15.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGTGCAGCTACCTAA	NA	False	NA	11	True	AGTAAA	-16	NA	71823984	71825800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71824630_71825392_71825447_71825589
ENSMUSG00000002409.19_0	chr7	+	2382	11	FSM	ENSMUSG00000002409.19	ENSMUST00000172761.8	2018	11	6	-370	6	-1	multi-exon	TRUE	canonical	0	0	junction_8	5.57135531087365	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTGCCTGAGCGTTTGC	NA	False	NA	NA	False	AGTAAA	-13	NA	27878924	27886718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27879066_27880933_27881098_27881785_27881906_27882003_27882193_27882488_27882637_27883665_27883953_27884492_27884640_27884720_27884862_27885258_27885455_27885786_27885894_27885976
ENSMUSG00000002409.19_1	chr7	+	2497	11	FSM	ENSMUSG00000002409.19	ENSMUST00000085901.13	2534	11	36	1	11	-1	multi-exon	FALSE	canonical	2	7	junction_5	4.15210789840534	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTGCCTGAGCGTTTGC	NA	False	NA	NA	False	AGTAAA	-13	NA	27878929	27886718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27879066_27880933_27881098_27881785_27881906_27882003_27882193_27882488_27882637_27883665_27883953_27884492_27884640_27884720_27884862_27885138_27885455_27885786_27885894_27885976
ENSMUSG00000002409.19_6	chr7	+	1087	3	ISM	ENSMUSG00000002409.19	ENSMUST00000172467.8	2523	11	5524	3	5524	-3	3prime_fragment	FALSE	canonical	3	13	junction_1	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCCTGCCTGAGCGTTT	NA	False	NA	NA	False	AGTAAA	-11	NA	27885214	27886716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27885455_27885786_27885894_27885976
ENSMUSG00000002413.16_0	chr6	-	3100	1	ISM	ENSMUSG00000002413.16	ENSMUST00000002487.15	9728	22	119118	9	36909	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAGAAACCTTAAGATTA	9258	False	NA	-15	True	AATAAA	-11	NA	39583279	39580179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_39580200_39583300
ENSMUSG00000002413.16_1	chr6	-	3618	20	NIC	ENSMUSG00000002413.16	novel	9728	22	NA	NA	-120	5071	combination_of_known_junctions	FALSE	canonical	3	23	junction_14	7.35788720728475	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCATTCTCCCTCTTCCTG	6591	False	NA	-15	True	AATAAA	-16	NA	39702247	39585974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_39587339_39591065_39591220_39592594_39592730_39600512_39600645_39604655_39604775_39605542_39605590_39616523_39616701_39617384_39617470_39620033_39620152_39621171_39621315_39625383_39625421_39628538_39628699_39637806_39637924_39638937_39639087_39641937_39642041_39643179_39643284_39654311_39654407_39654505_39654576_39665177_39665280_39702040
ENSMUSG00000002413.16_12	chr6	-	4762	20	NIC	ENSMUSG00000002413.16	novel	9728	22	NA	NA	-106	2382	combination_of_known_junctions	FALSE	canonical	1	1	junction_10	12.0981672566356	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTTTTGTTCTGGGCCTT	6605	False	NA	NA	False	CATAAA	-13	NA	39702233	39588663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_39591220_39592594_39592730_39600512_39600645_39604655_39604775_39605542_39605590_39616523_39616701_39617384_39617470_39620033_39620152_39621171_39621315_39623658_39623779_39625383_39625421_39628538_39628699_39637806_39637924_39638937_39639087_39641937_39642041_39643179_39643284_39654311_39654407_39654505_39654576_39665177_39665280_39702040
ENSMUSG00000002413.16_18	chr6	-	2350	3	ISM	ENSMUSG00000002413.16	ENSMUST00000101497.4	2253	18	-146	61515	124	-24048	5prime_fragment	FALSE	canonical	3	36	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGGAAAGAAG	6565	False	NA	NA	False	NA	NA	NA	39702273	39652560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_39654576_39665177_39665280_39702040
ENSMUSG00000002413.16_4	chr6	-	3728	21	NIC	ENSMUSG00000002413.16	novel	9728	22	NA	NA	-110	5071	combination_of_known_junctions	FALSE	canonical	1	1	junction_11	11.8915936694793	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCATTCTCCCTCTTCCTG	6601	False	NA	-15	True	AATAAA	-16	NA	39702237	39585974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_39587339_39591065_39591220_39592594_39592730_39600512_39600645_39604655_39604775_39605542_39605590_39616523_39616701_39617384_39617470_39620033_39620152_39621171_39621315_39623658_39623779_39625383_39625421_39628538_39628699_39637806_39637924_39638937_39639087_39641937_39642041_39643179_39643284_39654311_39654407_39654505_39654576_39665177_39665280_39702040
ENSMUSG00000002413.16_7	chr6	-	3693	19	NIC	ENSMUSG00000002413.16	novel	9728	22	NA	NA	24	1293	combination_of_known_junctions	FALSE	canonical	3	23	junction_13	7.19481981002759	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACTTTAATGATAATTG	6465	False	NA	NA	False	AATAAA	-13	NA	39702373	39589752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_39591220_39592594_39592730_39600512_39600645_39604655_39604775_39605542_39605590_39616523_39616701_39617384_39617470_39620033_39620152_39621171_39621315_39625383_39625421_39628538_39628699_39637806_39637924_39638937_39639087_39641937_39642041_39643179_39643284_39654311_39654407_39654505_39654576_39665177_39665280_39702040
ENSMUSG00000002416.14_0	chr6	+	431	4	FSM	ENSMUSG00000002416.14	ENSMUST00000135671.8	4371	4	14	3926	0	-15	multi-exon	FALSE	canonical	3	748	junction_3	834.773555456142	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACGAGGAACTGAGTTA	NA	False	NA	15	True	ATTAAA	-24	NA	39569521	39576390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_39569647_39573384_39573530_39575199_39575296_39576325
ENSMUSG00000002416.14_1	chr6	+	438	4	FSM	ENSMUSG00000002416.14	ENSMUST00000119379.2	455	4	2	15	0	-15	multi-exon	FALSE	canonical	3	713	junction_3	851.269770532363	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACGAGGAACTGAGTTA	NA	False	NA	15	True	ATTAAA	-24	NA	39569518	39576390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_39569647_39573384_39573530_39575199_39575300_39576325
ENSMUSG00000002428.13_0	chr3	+	3893	26	NIC	ENSMUSG00000002428.13	novel	4955	25	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_25	37.5784193387641	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTACCTTCTTTGGT	6952	False	NA	2	True	AATAAA	-6	NA	20111988	20172640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735_20170908_20171941
ENSMUSG00000002428.13_3	chr3	+	4927	25	FSM	ENSMUSG00000002428.13	ENSMUST00000002502.12	4955	25	14	14	5	0	multi-exon	FALSE	canonical	3	160	junction_12	28.4765680965168	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTACCTTCTTTGGT	6952	False	NA	2	True	AATAAA	-6	NA	20111988	20172640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735
ENSMUSG00000002428.13_4	chr3	+	4826	24	NIC	ENSMUSG00000002428.13	novel	4955	25	NA	NA	5	-20	intron_retention	FALSE	canonical	1	1	junction_12	50.0424772309506	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATCAATAAAAATCT	6952	False	NA	-18	True	TTTAAA	-3	NA	20111988	20172620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735
ENSMUSG00000002455.15_0	chr2	+	3003	21	FSM	ENSMUSG00000002455.15	ENSMUST00000002529.7	3054	21	47	4	-7	-4	multi-exon	FALSE	canonical	3	340	junction_3	47.7921280128851	837	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTATGTTGGGGCTTGGGC	2541	False	NA	24	True	ATTAAA	-12	NA	181243158	181297449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
ENSMUSG00000002458.14_0	chr2	-	1461	6	FSM	ENSMUSG00000002458.14	ENSMUST00000002532.9	1511	6	48	2	1	-2	multi-exon	FALSE	canonical	3	85	junction_5	20.8461027532726	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACTTTGTTCTTTCAAG	NA	False	NA	-17	True	AATAAA	-12	NA	181335722	181330216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
ENSMUSG00000002458.14_1	chr2	-	1356	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108772.8	779	5	18	-595	1	-1	multi-exon	FALSE	canonical	3	30	junction_4	46.2729672703189	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACTTTGTTCTTTCAAGT	NA	False	NA	-16	True	AATAAA	-13	NA	181335722	181330215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181335671
ENSMUSG00000002458.14_15	chr2	-	1412	5	ISM	ENSMUSG00000002458.14	ENSMUST00000108778.8	1427	6	221	-81	221	-1	3prime_fragment	FALSE	canonical	3	121	junction_1	9.83298021964857	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACTTTGTTCTTTCAAGT	NA	False	NA	-16	True	AATAAA	-13	NA	181333389	181330215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282
ENSMUSG00000002458.14_6	chr2	-	1549	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108769.8	1460	5	-5	-84	-5	-1	multi-exon	FALSE	canonical	3	85	junction_4	23.2849200127464	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACTTTGTTCTTTCAAGT	NA	False	NA	-16	True	AATAAA	-13	NA	181335728	181330215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
ENSMUSG00000002458.14_7	chr2	-	1945	6	FSM	ENSMUSG00000002458.14	ENSMUST00000108776.8	1216	6	-90	-639	7	-5	multi-exon	FALSE	canonical	2	7	junction_5	50.8660987299006	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACTACTTTGTTCTTTC	NA	False	NA	-20	True	AATAAA	-9	NA	181335693	181330219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335155
ENSMUSG00000002475.17_1	chr18	-	1911	9	FSM	ENSMUSG00000002475.17	ENSMUST00000117828.9	1962	9	48	3	-10	-1	multi-exon	FALSE	canonical	2	2	junction_1	3.63145976158349	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTGTTTCTTTGTGAGT	11	True	NA	NA	False	AATAAA	-12	NA	10706723	10644413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_10645236_10647725_10647892_10647969_10648019_10652187_10652362_10658779_10658893_10682068_10682115_10704547_10704731_10706000_10706165_10706529
ENSMUSG00000002477.6_0	chr18	+	563	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	35	260	14	15	multi-exon	FALSE	canonical	3	1823	junction_2	40.4337592722825	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTTGTCTGTTGATTG	3	True	NA	-14	True	AATAAA	-14	NA	10617809	10627970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
ENSMUSG00000002477.6_2	chr18	+	430	4	FSM	ENSMUSG00000002477.6	ENSMUST00000234207.2	439	4	24	-15	24	15	multi-exon	FALSE	canonical	3	110	junction_2	847.378047600689	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTTGTCTGTTGATTG	13	True	NA	-14	True	AATAAA	-14	NA	10617819	10627970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_10617927_10623630_10623708_10626948_10627018_10627793
ENSMUSG00000002486.16_1	chr5	+	2818	13	FSM	ENSMUSG00000002486.16	ENSMUST00000094441.11	2882	13	60	4	1	-4	multi-exon	FALSE	canonical	2	32	junction_2	9.3392838174146	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACCTCAGGCTGTCACTG	NA	False	NA	11	True	AGTAAA	-14	NA	114845880	114860384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_114846022_114846714_114846900_114847367_114847579_114849313_114849371_114851484_114851554_114852688_114852863_114853613_114853727_114853895_114853963_114855497_114855671_114856439_114856522_114857639_114857826_114858185_114858330_114859168
ENSMUSG00000002486.16_23	chr5	+	1972	5	ISM	ENSMUSG00000002486.16	ENSMUST00000112199.3	2156	8	2305	4	-294	-4	3prime_fragment	FALSE	canonical	3	59	junction_1	2.9474565306379	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACCTCAGGCTGTCACTG	1612	False	NA	11	True	AGTAAA	-14	NA	114855326	114860384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114855671_114856439_114856522_114857639_114857826_114858185_114858330_114859168
ENSMUSG00000002486.16_5	chr5	+	3287	12	NIC	ENSMUSG00000002486.16	novel	2882	13	NA	NA	1	-3	intron_retention	FALSE	canonical	3	53	junction_7	4.96267056871134	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCAGGCTGTCACTGC	NA	False	NA	12	True	AGTAAA	-15	NA	114845880	114860385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_114846022_114846714_114847579_114849313_114849371_114851484_114851554_114852688_114852863_114853613_114853727_114853895_114853963_114855497_114855671_114856439_114856522_114857639_114857826_114858185_114858330_114859168
ENSMUSG00000002489.17_0	chr16	-	7336	29	NIC	ENSMUSG00000002489.17	novel	7255	28	NA	NA	-67	-2	combination_of_known_junctions	FALSE	canonical	3	45	junction_25	9.36450092375565	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGGCTTCGACTTCCCT	7779	False	NA	-8	True	AATAAA	-8	NA	89940724	89584005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_89586480_89589889_89590063_89591565_89591654_89594919_89595023_89595537_89595597_89596848_89596958_89601580_89601700_89601970_89602151_89606255_89606365_89608357_89608484_89608772_89608842_89609835_89610016_89618765_89618870_89629897_89630123_89634646_89634734_89640140_89640223_89646537_89646643_89652732_89652904_89655486_89655562_89657092_89657240_89662121_89662308_89664397_89664623_89673925_89674099_89681565_89682014_89694492_89695467_89705434_89705604_89752823_89752996_89863408_89863461_89940572
ENSMUSG00000002489.17_1	chr16	-	2090	1	ISM	ENSMUSG00000002489.17	ENSMUST00000114122.8	4596	19	68610	7	6075	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGGCTTCGACTTCCCT	NA	False	NA	-8	True	AATAAA	-8	NA	89586095	89584005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_89584000_89586100
ENSMUSG00000002489.17_13	chr16	-	5617	24	ISM	ENSMUSG00000002489.17	ENSMUST00000002588.11	7289	28	75902	6	-27108	-2	3prime_fragment	FALSE	canonical	3	48	junction_20	8.90954332122678	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGGCTTCGACTTCCCT	NA	False	NA	-8	True	AATAAA	-8	NA	89681813	89584005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_89586480_89589889_89590063_89591565_89591654_89594919_89595023_89595537_89595597_89596848_89596958_89601580_89601700_89601970_89602151_89606255_89606365_89608357_89608484_89608772_89608842_89609835_89610016_89618765_89618870_89629897_89630123_89634646_89634734_89640140_89640223_89646537_89646643_89652732_89652904_89655486_89655562_89657092_89657240_89662121_89662308_89664397_89664623_89673925_89674099_89681565
ENSMUSG00000002489.17_16	chr16	-	4136	15	FSM	ENSMUSG00000002489.17	ENSMUST00000089084.12	3495	15	99	-740	99	-2	multi-exon	FALSE	canonical	3	54	junction_14	7.23793859479623	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGGCTTCGACTTCCCT	NA	False	NA	-8	True	AATAAA	-8	NA	89634664	89584005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_89586480_89589889_89590063_89591565_89591654_89594919_89595023_89595537_89595597_89596848_89596958_89601580_89601700_89601970_89602151_89606255_89606365_89608357_89608484_89608772_89608842_89609835_89610016_89618765_89618870_89629897_89630123_89634646
ENSMUSG00000002489.17_2	chr16	-	7167	28	NIC	ENSMUSG00000002489.17	novel	7255	28	NA	NA	-67	-2	combination_of_known_junctions	FALSE	canonical	1	8	junction_25	13.3559478999909	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGGCTTCGACTTCCCT	7779	False	NA	-8	True	AATAAA	-8	NA	89940724	89584005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_89586480_89589889_89590063_89591565_89591654_89594919_89595023_89595537_89595597_89596848_89596958_89601580_89601700_89601970_89602151_89606255_89606365_89608357_89608484_89608772_89608842_89609835_89610016_89618765_89618870_89629897_89630123_89634646_89634734_89640140_89640223_89646537_89646643_89652732_89652904_89655486_89655562_89657092_89657240_89662121_89662308_89664397_89664623_89673925_89674099_89681565_89682014_89694492_89695467_89752823_89752996_89863408_89863461_89940572
ENSMUSG00000002489.17_37	chr16	-	5135	22	ISM	ENSMUSG00000002489.17	ENSMUST00000002588.11	7289	28	93154	6	-9856	-2	3prime_fragment	FALSE	canonical	3	48	junction_20	8.5183541999992	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGGCTTCGACTTCCCT	NA	False	NA	-8	True	AATAAA	-8	NA	89664561	89584005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_89586480_89589889_89590063_89591565_89591654_89594919_89595023_89595537_89595597_89596848_89596958_89601580_89601700_89601970_89602151_89606255_89606365_89608357_89608484_89608772_89608842_89609835_89610016_89618765_89618870_89629897_89630123_89634646_89634734_89640140_89640223_89646537_89646643_89652732_89652904_89655486_89655562_89657092_89657240_89662121_89662308_89664397
ENSMUSG00000002489.17_6	chr16	-	6503	25	ISM	ENSMUSG00000002489.17	ENSMUST00000002588.11	7289	28	62537	6	20695	-2	3prime_fragment	FALSE	canonical	3	48	junction_20	8.76773995331117	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGGCTTCGACTTCCCT	6264	False	NA	-8	True	AATAAA	-8	NA	89695178	89584005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_89586480_89589889_89590063_89591565_89591654_89594919_89595023_89595537_89595597_89596848_89596958_89601580_89601700_89601970_89602151_89606255_89606365_89608357_89608484_89608772_89608842_89609835_89610016_89618765_89618870_89629897_89630123_89634646_89634734_89640140_89640223_89646537_89646643_89652732_89652904_89655486_89655562_89657092_89657240_89662121_89662308_89664397_89664623_89673925_89674099_89681565_89682014_89694492
ENSMUSG00000002489.17_7	chr16	-	3307	8	ISM	ENSMUSG00000002489.17	ENSMUST00000164263.9	3569	13	13088	-612	-5274	-2	3prime_fragment	FALSE	canonical	3	60	junction_1	5.16661180572146	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGGCTTCGACTTCCCT	NA	False	NA	-8	True	AATAAA	-8	NA	89602152	89584005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_89586480_89589889_89590063_89591565_89591654_89594919_89595023_89595537_89595597_89596848_89596958_89601580_89601700_89601970
ENSMUSG00000002496.11_2	chr17	-	5492	41	NIC	ENSMUSG00000002496.11	novel	5598	42	NA	NA	-1	-5	combination_of_known_junctions	TRUE	canonical	3	52	junction_11	56.8017110217641	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACAGACAGCAGTCAGAC	NA	False	NA	-16	True	AATAAA	-38	NA	24851568	24815467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24820362_24820432_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823964_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
ENSMUSG00000002496.11_24	chr17	-	5565	41	FSM	ENSMUSG00000002496.11	ENSMUST00000226284.2	6266	41	23	678	-2	-5	multi-exon	FALSE	canonical	3	45	junction_15	53.8189964139058	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACAGACAGCAGTCAGAC	NA	False	NA	-16	True	AATAAA	-38	NA	24851578	24815467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823967_24825197_24825327_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
ENSMUSG00000002496.11_3	chr17	-	5437	40	FSM	ENSMUSG00000002496.11	ENSMUST00000097373.2	6018	40	24	557	-3	-5	multi-exon	FALSE	canonical	3	83	junction_15	40.6087957618561	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACAGACAGCAGTCAGAC	NA	False	NA	-16	True	AATAAA	-38	NA	24851579	24815467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823967_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
ENSMUSG00000002496.11_6	chr17	-	5441	40	FSM	ENSMUSG00000002496.11	ENSMUST00000228412.2	5432	40	18	-27	-4	-5	multi-exon	FALSE	canonical	3	88	junction_15	40.1073674085831	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACAGACAGCAGTCAGAC	NA	False	NA	-16	True	AATAAA	-38	NA	24851586	24815467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823964_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
ENSMUSG00000002500.16_2	chr17	+	1290	9	ISM	ENSMUSG00000002500.16	ENSMUST00000170239.9	1375	10	515	0	161	0	3prime_fragment	FALSE	canonical	3	9	junction_2	2.8613807855649	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGTCTCTGTGTGTC	NA	False	NA	18	True	AATAAA	-18	NA	24947308	24955117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24947484_24949842_24950012_24951309_24951446_24952282_24952470_24952557_24952719_24952890_24952993_24954390_24954487_24954695_24954816_24954973
ENSMUSG00000002504.16_0	chr17	-	1230	2	ISM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	4268	2	4235	-2	3prime_fragment	FALSE	canonical	3	161	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGCGCCTGTGTGTT	NA	False	NA	-8	True	ATTAAA	-15	NA	24859696	24858261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_24859364_24859568
ENSMUSG00000002504.16_1	chr17	-	2110	7	FSM	ENSMUSG00000002504.16	ENSMUST00000002572.6	2136	7	24	2	-14	-2	multi-exon	FALSE	canonical	3	54	junction_5	35.3478743663919	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGCGCCTGTGTGTT	5165	False	NA	-8	True	ATTAAA	-15	NA	24869277	24858261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24859364_24859568_24859632_24860682_24860727_24860792_24860947_24861164_24861345_24866500_24866702_24868911
ENSMUSG00000002504.16_2	chr17	-	1552	6	FSM	ENSMUSG00000002504.16	ENSMUST00000234557.2	2035	6	-4	487	-4	-3	multi-exon	TRUE	canonical	3	15	junction_1	24.9671784549236	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCTTTCTTACCCACCC	5175	False	NA	-3	True	AATAAA	-18	NA	24869267	24858746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24859364_24860682_24860727_24860792_24860947_24861164_24861345_24866500_24866702_24868911
ENSMUSG00000002524.18_0	chr15	-	1811	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	10	0	2	0	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	1174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	-8	True	CATAAA	-17	NA	75952751	75942038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
ENSMUSG00000002524.18_3	chr15	-	1809	11	NNC	ENSMUSG00000002524.18	novel	1821	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	121	junction_10	401.11844884024	141	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	-8	True	CATAAA	-17	NA	75952752	75942038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949549_75952698
ENSMUSG00000002524.18_4	chr15	-	1862	12	FSM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	11	8	2	0	multi-exon	FALSE	canonical	3	225	junction_7	445.848082194703	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	-8	True	CATAAA	-17	NA	75952751	75942038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
ENSMUSG00000002546.18_1	chr2	+	4318	26	FSM	ENSMUSG00000002546.18	ENSMUST00000239447.2	4361	26	32	11	-28	0	multi-exon	FALSE	canonical	3	80	junction_7	19.1852443299532	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGCTGGGCCTAGGGTG	NA	False	NA	19	True	AATAAA	-12	NA	32178296	32197922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32178409_32182104_32182228_32186637_32186734_32186976_32187021_32187119_32187184_32187532_32187590_32187765_32187847_32188611_32188651_32188897_32188961_32189043_32189138_32189215_32189323_32191696_32191756_32192153_32192296_32192714_32192805_32192907_32193016_32193156_32193245_32193595_32193934_32194153_32194268_32194645_32194892_32194970_32195047_32195221_32195308_32195486_32195706_32195784_32195888_32195988_32196096_32196171_32196329_32196417
ENSMUSG00000002546.18_4	chr2	+	4269	25	NIC	ENSMUSG00000002546.18	novel	4361	26	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_6	28.9025842270203	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGCTGGGCCTAGGGTG	NA	False	NA	19	True	AATAAA	-12	NA	32178264	32197922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32178409_32182104_32182228_32186637_32186734_32186976_32187021_32187119_32187184_32187532_32187590_32188611_32188651_32188897_32188961_32189043_32189138_32189215_32189323_32191696_32191756_32192153_32192296_32192714_32192805_32192907_32193016_32193156_32193245_32193595_32193934_32194153_32194268_32194645_32194892_32194970_32195047_32195221_32195308_32195486_32195706_32195784_32195888_32195988_32196096_32196171_32196329_32196417
ENSMUSG00000002550.17_0	chr2	-	1890	7	FSM	ENSMUSG00000002550.17	ENSMUST00000002625.15	2005	7	96	19	-2	-19	multi-exon	FALSE	canonical	3	135	junction_2	20.9741904889478	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAACATAAAACATTAAC	NA	False	NA	NA	False	NA	NA	NA	32150075	32145032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32146224_32146629_32146679_32148101_32148197_32148288_32148432_32148582_32148680_32149591_32149752_32149920
ENSMUSG00000002550.17_1	chr2	-	1139	1	ISM	ENSMUSG00000002550.17	ENSMUST00000002625.15	2005	7	4009	10	519	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATTAACAATTTGTCC	NA	False	NA	NA	False	AATAAA	-7	NA	32146162	32145023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_32145000_32146200
ENSMUSG00000002550.17_6	chr2	-	2298	6	NIC	ENSMUSG00000002550.17	novel	2005	7	NA	NA	0	-15	intron_retention	FALSE	canonical	3	135	junction_1	19.2831532691103	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACATAAAACATTAACAATT	NA	False	NA	NA	False	AATAAA	-2	NA	32150073	32145028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32146679_32148101_32148197_32148288_32148432_32148582_32148680_32149591_32149752_32149920
ENSMUSG00000002578.19_0	chr10	-	4096	2	ISM	ENSMUSG00000002578.19	ENSMUST00000133342.10	5150	8	10073	2	8730	-2	3prime_fragment	FALSE	canonical	3	4	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCTGTTTGTTCTTGAA	NA	False	NA	NA	False	AATAAA	-13	NA	128471787	128466713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128470681_128471658
ENSMUSG00000002578.19_2	chr10	-	1345	1	ISM	ENSMUSG00000002578.19	ENSMUST00000133342.10	5150	8	13794	10	12451	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAATTTAACCCCTGTTTG	NA	False	NA	NA	False	AATAAA	-5	NA	128468066	128466721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128466700_128468100
ENSMUSG00000002580.8_0	chr11	-	715	4	FSM	ENSMUSG00000002580.8	ENSMUST00000002655.8	747	4	17	15	17	-15	multi-exon	FALSE	canonical	3	749	junction_2	62.9567752950829	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTTGTGTCAACTGGC	NA	False	NA	-14	True	AATAAA	-11	NA	98329800	98328548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_98328972_98329062_98329140_98329472_98329571_98329683
ENSMUSG00000002580.8_1	chr11	-	586	3	ISM	ENSMUSG00000002580.8	ENSMUST00000002655.8	747	4	259	15	259	-15	3prime_fragment	FALSE	canonical	3	749	junction_2	15	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTTGTGTCAACTGGC	89	False	NA	-14	True	AATAAA	-11	NA	98329558	98328548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_98328972_98329062_98329140_98329472
ENSMUSG00000002602.17_0	chr7	-	3200	13	ISM	ENSMUSG00000002602.17	ENSMUST00000002677.11	4265	20	14340	4	331	-4	3prime_fragment	TRUE	canonical	0	0	junction_11	1.95789002074512	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTATTCTGTCTCTTGTGTC	3848	False	NA	NA	False	CATAAA	-14	NA	25473772	25456701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_25458439_25460175_25460313_25460829_25460990_25462708_25462819_25463367_25463490_25463846_25463940_25465942_25466021_25466217_25466314_25469642_25469735_25470057_25470191_25472523_25472551_25472767_25472919_25473508
ENSMUSG00000002602.17_1	chr7	-	3006	13	NIC	ENSMUSG00000002602.17	novel	4265	20	NA	NA	-265	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	2.09496751499609	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAATACATATGTCTAAAG	3252	False	NA	NA	False	ATTAAA	-6	NA	25474368	25457060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_25458439_25460175_25460313_25460829_25460990_25462708_25462819_25463367_25463490_25463846_25463940_25465942_25466021_25466217_25466314_25469642_25469735_25470057_25470191_25472523_25472551_25472767_25472919_25473939
ENSMUSG00000002603.16_0	chr7	+	1373	7	FSM	ENSMUSG00000002603.16	ENSMUST00000002678.10	2175	7	799	3	-347	-3	multi-exon	FALSE	canonical	3	17	junction_4	3.1446603773522	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGGTGGTCTCCGTGTC	NA	False	NA	NA	False	ATTAAA	-10	NA	25387225	25404499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_25387649_25391801_25391963_25393647_25393766_25396342_25396421_25396549_25396698_25403549_25403704_25404208
ENSMUSG00000002608.9_0	chr7	-	2963	5	FSM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	56	13	13	-13	multi-exon	FALSE	canonical	3	101	junction_3	5.52268050859363	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAAACTGCCATCCATTC	NA	False	NA	-16	True	ATTAAA	-11	NA	25418457	25410543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25418342
ENSMUSG00000002608.9_3	chr7	-	3113	6	NIC	ENSMUSG00000002608.9	novel	3032	5	NA	NA	13	-9	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	47.4189835403502	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCCATCCATTCATCT	NA	False	NA	-12	True	ATTAAA	-15	NA	25418457	25410539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25416278_25416425_25418342
ENSMUSG00000002608.9_5	chr7	-	1949	1	ISM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	6023	11	3041	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTGCCATCCATTCAT	539	False	NA	-14	True	ATTAAA	-13	NA	25412490	25410541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_25410500_25412500
ENSMUSG00000002608.9_7	chr7	-	2759	5	NIC	ENSMUSG00000002608.9	novel	3032	5	NA	NA	2	-10	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	40.4992283877113	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACTGCCATCCATTCATC	NA	False	NA	-13	True	ATTAAA	-14	NA	25418426	25410540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_25412539_25413777_25413908_25414175_25414270_25415159_25415613_25418342
ENSMUSG00000002608.9_8	chr7	-	2652	4	ISM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	3099	11	117	-11	3prime_fragment	FALSE	canonical	3	101	junction_3	5.43650214343336	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTGCCATCCATTCAT	NA	False	NA	-14	True	ATTAAA	-13	NA	25415414	25410541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159
ENSMUSG00000002617.15_1	chr17	-	4059	6	FSM	ENSMUSG00000002617.15	ENSMUST00000037057.14	4103	6	19	25	18	-1	multi-exon	FALSE	canonical	3	8	junction_3	2.41660919471891	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAAGGCCTGTATTTAC	NA	False	NA	NA	False	AATAAA	-17	NA	23412207	23392867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23396339_23397248_23397376_23401121_23401207_23410318_23410410_23410650_23410777_23412048
ENSMUSG00000002617.15_2	chr17	-	4126	6	FSM	ENSMUSG00000002617.15	ENSMUST00000135840.2	759	6	25	-3392	-16	0	multi-exon	FALSE	canonical	1	1	junction_4	4.4988887516808	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGGCCTGTATTTACT	NA	False	NA	NA	False	AATAAA	-18	NA	23412200	23392866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23396339_23397248_23397376_23401121_23401207_23410318_23410483_23410650_23410777_23412048
ENSMUSG00000002625.11_10	chr17	-	1978	15	FSM	ENSMUSG00000002625.11	ENSMUST00000236503.2	1987	15	7	2	1	-1	multi-exon	FALSE	canonical	3	144	junction_11	68.7455007804221	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGTCTTCGTTTGTGCTG	NA	False	NA	-3	True	AATAAA	-14	NA	32569562	32540400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557329_32557430_32557489_32557764_32557798_32564297_32564373_32569460
ENSMUSG00000002625.11_22	chr17	-	2134	15	NIC	ENSMUSG00000002625.11	novel	1987	15	NA	NA	-3	0	intron_retention	FALSE	canonical	3	35	junction_6	121.469929931449	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTCGTTTGTGCTGTG	NA	False	NA	-1	True	AATAAA	-16	NA	32569554	32540398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554084_32554145_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
ENSMUSG00000002625.11_24	chr17	-	3519	13	FSM	ENSMUSG00000002625.11	ENSMUST00000236039.2	3513	13	-7	1	-5	0	multi-exon	FALSE	canonical	3	272	junction_5	37.9549257526462	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTCGTTTGTGCTGTG	NA	False	NA	-1	True	AATAAA	-16	NA	32569556	32540398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
ENSMUSG00000002625.11_3	chr17	-	2081	14	FSM	ENSMUSG00000002625.11	ENSMUST00000050214.9	2102	14	19	2	1	0	multi-exon	FALSE	canonical	3	272	junction_6	38.0609912279546	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTTCGTTTGTGCTGT	NA	False	NA	-2	True	AATAAA	-15	NA	32569562	32540399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
ENSMUSG00000002625.11_32	chr17	-	3575	14	NIC	ENSMUSG00000002625.11	novel	1987	15	NA	NA	-1	0	intron_retention	TRUE	canonical	3	35	junction_5	126.05300847955	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTCGTTTGTGCTGTG	NA	False	NA	-1	True	AATAAA	-16	NA	32569552	32540398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32553671_32554084_32554145_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
ENSMUSG00000002635.12_0	chr7	-	1157	7	FSM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	1	137	1	-3	multi-exon	FALSE	canonical	3	638	junction_2	61.3994209165599	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATATGTGTTTACCT	5733	False	NA	NA	False	ATTAAA	-17	NA	33896085	33884060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ENSMUSG00000002635.12_1	chr7	-	4056	6	NIC	ENSMUSG00000002635.12	novel	1295	7	NA	NA	8	-3	intron_retention	FALSE	canonical	3	713	junction_1	37.7232024091275	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATATGTGTTTACCT	5740	False	NA	NA	False	ATTAAA	-17	NA	33896078	33884060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_33884237_33885718_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ENSMUSG00000002635.12_4	chr7	-	1010	6	FSM	ENSMUSG00000002635.12	ENSMUST00000148381.3	959	6	-54	3	-1	-3	multi-exon	TRUE	canonical	3	50	junction_1	296.710903068964	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATATGTGTTTACCT	5731	False	NA	NA	False	ATTAAA	-17	NA	33896087	33884060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_33884237_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ENSMUSG00000002658.10_1	chr17	-	1740	13	FSM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	-23	0	-23	0	multi-exon	FALSE	canonical	3	510	junction_7	59.552672763977	645	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57318311	57310404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
ENSMUSG00000002660.9_0	chr17	+	970	6	FSM	ENSMUSG00000002660.9	ENSMUST00000002735.9	983	6	10	3	10	-3	multi-exon	FALSE	canonical	3	1307	junction_4	119.017645750536	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCTGAAGCACCTTCC	NA	False	NA	30	True	ATTAAA	-18	NA	57297314	57303185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57297514_57297605_57297678_57298293_57298391_57299825_57300014_57300447_57300554_57302877
ENSMUSG00000002661.15_0	chr17	+	727	4	FSM	ENSMUSG00000002661.15	ENSMUST00000002737.7	917	4	5	185	5	0	multi-exon	FALSE	canonical	3	443	junction_1	15.369522511198	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGGGATCTTCAAATG	376	False	NA	4	True	AATAAA	-14	NA	57304347	57306137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57304568_57305388_57305563_57305670_57305796_57305929
ENSMUSG00000002661.15_1	chr17	+	551	3	FSM	ENSMUSG00000002661.15	ENSMUST00000074141.14	736	3	9	176	5	-2	multi-exon	FALSE	canonical	3	32	junction_1	221	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTCATGGGATCTTCAAA	376	False	NA	2	True	AATAAA	-12	NA	57304347	57306135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57304568_57305670_57305796_57305929
ENSMUSG00000002668.9_1	chr17	-	1303	8	NIC	ENSMUSG00000002668.9	novel	2521	24	NA	NA	1096	-1	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	6.23027499638758	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGTATCTGGGGCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	57377701	57373055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_57373642_57373731_57373943_57374048_57374117_57374592_57374701_57374788_57374834_57377112_57377185_57377407_57377449_57377529
ENSMUSG00000002668.9_2	chr17	-	1334	7	NIC	ENSMUSG00000002668.9	novel	2521	24	NA	NA	1171	-1	intron_retention	TRUE	canonical	3	24	junction_3	5.29150262212918	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGTATCTGGGGCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	57377626	57373055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_57373642_57373731_57374117_57374592_57374701_57374788_57374834_57377112_57377185_57377407_57377449_57377529
ENSMUSG00000002668.9_3	chr17	-	1183	7	NIC	ENSMUSG00000002668.9	novel	2521	24	NA	NA	1171	-1	combination_of_known_splicesites	FALSE	canonical	3	5	junction_4	10.8844945781705	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGTATCTGGGGCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	57377626	57373055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_57373642_57373731_57373943_57374048_57374117_57374592_57374701_57377112_57377185_57377407_57377449_57377529
ENSMUSG00000002679.15_0	chr12	-	1028	8	FSM	ENSMUSG00000002679.15	ENSMUST00000002756.14	1003	8	-25	0	-20	0	multi-exon	FALSE	canonical	3	360	junction_7	64.9976451692753	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCATCATGCCTTTCCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	81641757	81620338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_81620735_81621298_81621327_81626343_81626460_81628574_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81641713
ENSMUSG00000002688.9_2	chr12	-	3767	18	NIC	ENSMUSG00000002688.9	novel	3653	19	NA	NA	-141	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	4.97606729001332	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTGGTGTCATACTAAT	NA	False	NA	-7	True	AATAAA	-11	NA	50696022	50388016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_50389004_50389836_50389923_50411294_50411563_50412396_50412496_50413084_50413247_50430182_50430290_50431925_50431999_50433998_50434052_50435035_50435316_50436692_50436771_50438108_50438233_50439617_50439823_50441381_50441460_50441612_50441824_50472221_50472383_50474885_50475018_50536685_50536825_50695498
ENSMUSG00000002688.9_4	chr12	-	3798	19	FSM	ENSMUSG00000002688.9	ENSMUST00000002765.9	3653	19	-148	3	-148	-3	multi-exon	FALSE	canonical	0	0	junction_18	5.99897110519693	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTGGTGTCATACTAAT	NA	False	NA	-7	True	AATAAA	-11	NA	50696029	50388016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_50389004_50389836_50389923_50411294_50411563_50412396_50412496_50413084_50413247_50430182_50430290_50431925_50431999_50433998_50434052_50435035_50435316_50436692_50436771_50438108_50438233_50439617_50439823_50441381_50441460_50441612_50441824_50466635_50466660_50472221_50472383_50474885_50475018_50536685_50536825_50695498
ENSMUSG00000002688.9_5	chr12	-	3203	14	ISM	ENSMUSG00000002688.9	ENSMUST00000002765.9	3653	19	253666	3	253666	-3	3prime_fragment	FALSE	canonical	3	9	junction_12	3.42804307002418	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTGGTGTCATACTAAT	NA	False	NA	-7	True	AATAAA	-11	NA	50442215	50388016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_50389004_50389836_50389923_50411294_50411563_50412396_50412496_50413084_50413247_50430182_50430290_50431925_50431999_50433998_50434052_50435035_50435316_50436692_50436771_50438108_50438233_50439617_50439823_50441381_50441460_50441612
ENSMUSG00000002718.15_1	chr2	+	3501	25	FSM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	14	126	14	-126	multi-exon	FALSE	canonical	3	726	junction_12	67.9214722226255	1712	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGTCTTCAGGACAGG	NA	False	NA	7	True	AATAAA	-19	NA	166747992	166788183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
ENSMUSG00000002728.15_0	chr2	+	1001	6	FSM	ENSMUSG00000002728.15	ENSMUST00000110000.8	1142	6	32	109	11	-109	multi-exon	FALSE	canonical	3	961	junction_2	184.608775522725	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTCTGGAAGTTTGT	NA	False	NA	-45	True	AGTAAA	-16	NA	145745192	145758236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723
ENSMUSG00000002728.15_1	chr2	+	1038	6	FSM	ENSMUSG00000002728.15	ENSMUST00000002805.14	1172	6	25	109	4	-109	multi-exon	FALSE	canonical	3	102	junction_3	436.248094551713	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTCTGGAAGTTTGT	NA	False	NA	-45	True	AGTAAA	-16	NA	145745185	145758236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_145745283_145750510_145750536_145753592_145753714_145754312_145754449_145757453_145757600_145757723
ENSMUSG00000002728.15_3	chr2	+	963	5	NIC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	0	-109	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	539.338657524194	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTCTGGAAGTTTGT	NA	False	NA	-45	True	AGTAAA	-16	NA	145745181	145758236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_145745283_145753616_145753684_145754312_145754449_145757453_145757600_145757723
ENSMUSG00000002728.15_7	chr2	+	1620	5	NIC	ENSMUSG00000002728.15	novel	1172	6	NA	NA	-11	-109	intron_retention	FALSE	canonical	3	961	junction_2	190.755570036631	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTCTGGAAGTTTGT	NA	False	NA	-45	True	AGTAAA	-16	NA	145745202	145758236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_145745283_145750510_145750536_145753592_145754449_145757453_145757600_145757723
ENSMUSG00000002731.7_0	chr2	-	1574	8	FSM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	-1	41	-1	-41	multi-exon	TRUE	canonical	3	32	junction_1	7.52953368748825	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGAGCTCTGCTCATTT	NA	False	NA	-6	True	NA	NA	NA	76478360	76460282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_76460913_76463876_76464052_76467138_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
ENSMUSG00000002731.7_2	chr2	-	800	6	ISM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	13	6852	13	45	5prime_fragment	FALSE	canonical	3	42	junction_4	3.65513337649941	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGAGATGTCCCTTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	76478346	76467093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
ENSMUSG00000002732.15_0	chr2	-	862	4	FSM	ENSMUSG00000002732.15	ENSMUST00000002809.14	860	4	-5	3	-5	-3	multi-exon	FALSE	canonical	3	16	junction_2	10.2089285540757	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTGTTTTGCAAATCTG	NA	False	NA	-16	True	AATAAA	-23	NA	76503419	76493390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_76493697_76496020_76496155_76502040_76502193_76503149
ENSMUSG00000002733.9_0	chr2	+	2260	8	FSM	ENSMUSG00000002733.9	ENSMUST00000111920.2	2534	8	22	252	22	-252	multi-exon	FALSE	canonical	3	204	junction_7	23.0465367711259	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTAGTGCCTGTTGTAT	6528	False	NA	3	True	ATTAAA	-16	NA	76505646	76526920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_76505979_76510506_76510624_76513073_76513230_76516962_76517100_76517625_76517791_76520788_76520833_76522992_76523109_76525727
ENSMUSG00000002733.9_1	chr2	+	4213	7	ISM	ENSMUSG00000002733.9	ENSMUST00000111920.2	2534	8	2597	252	2597	-252	3prime_fragment	FALSE	canonical	3	204	junction_6	24.6418794377016	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTAGTGCCTGTTGTAT	9103	False	NA	3	True	ATTAAA	-16	NA	76508221	76526920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_76510624_76513073_76513230_76516962_76517100_76517625_76517791_76520788_76520833_76522992_76523109_76525727
ENSMUSG00000002733.9_4	chr2	+	960	5	ISM	ENSMUSG00000002733.9	ENSMUST00000111920.2	2534	8	22	9329	22	-5265	5prime_fragment	FALSE	canonical	3	231	junction_3	16.2230545829076	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAAAGAAGTGTTCGTG	6528	False	NA	-1	True	TATAAA	-14	NA	76505646	76517843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_76505979_76510506_76510624_76513073_76513230_76516962_76517100_76517625
ENSMUSG00000002741.10_0	chr11	+	2438	7	FSM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	95	8	95	-8	multi-exon	FALSE	canonical	3	192	junction_4	17.3205080756888	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCAATACTGTCTTGTG	NA	False	NA	11	True	GATAAA	-12	NA	5905787	5917772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_5906005_5909296_5909380_5911187_5911289_5912336_5912442_5912692_5912759_5914560_5914663_5916008
ENSMUSG00000002741.10_10	chr11	+	1426	1	ISM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	10658	4	7047	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACTGTCTTGTGTTTA	NA	False	NA	15	True	GATAAA	-16	NA	5916350	5917776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_5916400_5917800
ENSMUSG00000002748.8_0	chr5	+	6482	19	FSM	ENSMUSG00000002748.8	ENSMUST00000002825.6	6492	19	2	8	2	-8	multi-exon	FALSE	canonical	3	180	junction_5	50.9896201008077	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGAAGAGACAGCTTTG	NA	False	NA	33	True	AATAAA	-36	NA	135216119	135274975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135216611_135225325_135225443_135227024_135227170_135233843_135234046_135237896_135238019_135239594_135239793_135245443_135247149_135250811_135250951_135251938_135252073_135255363_135255467_135257380_135257480_135259010_135259189_135260453_135260637_135265128_135265277_135266772_135266921_135268880_135269000_135271265_135271397_135272662_135272767_135272959
ENSMUSG00000002748.8_30	chr5	+	4293	13	ISM	ENSMUSG00000002748.8	ENSMUST00000002825.6	6492	19	30240	8	9096	-8	3prime_fragment	FALSE	canonical	3	263	junction_1	21.7030143835674	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGAAGAGACAGCTTTG	NA	False	NA	33	True	AATAAA	-36	NA	135246357	135274975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135247149_135250811_135250951_135251938_135252073_135255363_135255467_135257380_135257480_135259010_135259189_135260453_135260637_135265128_135265277_135266772_135266921_135268880_135269000_135271265_135271397_135272662_135272767_135272959
ENSMUSG00000002748.8_35	chr5	+	3455	12	ISM	ENSMUSG00000002748.8	ENSMUST00000002825.6	6492	19	34741	8	13597	-8	3prime_fragment	FALSE	canonical	3	293	junction_1	16.3823125745194	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGAAGAGACAGCTTTG	NA	False	NA	33	True	AATAAA	-36	NA	135250858	135274975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135250951_135251938_135252073_135255363_135255467_135257380_135257480_135259010_135259189_135260453_135260637_135265128_135265277_135266772_135266921_135268880_135269000_135271265_135271397_135272662_135272767_135272959
ENSMUSG00000002748.8_41	chr5	+	2818	7	ISM	ENSMUSG00000002748.8	ENSMUST00000002825.6	6492	19	44367	8	-10758	-8	3prime_fragment	FALSE	canonical	3	301	junction_4	16.3605215890774	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGAAGAGACAGCTTTG	NA	False	NA	33	True	AATAAA	-36	NA	135260484	135274975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135260637_135265128_135265277_135266772_135266921_135268880_135269000_135271265_135271397_135272662_135272767_135272959
ENSMUSG00000002748.8_47	chr5	+	1581	1	ISM	ENSMUSG00000002748.8	ENSMUST00000002825.6	6492	19	57279	6	2154	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGAGACAGCTTTGAT	NA	False	NA	35	True	AATAAA	-38	NA	135273396	135274977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135273400_135275000
ENSMUSG00000002763.17_0	chr17	+	3363	16	FSM	ENSMUSG00000002763.17	ENSMUST00000144964.8	3383	16	19	1	6	-1	multi-exon	FALSE	canonical	3	74	junction_1	12.537942414926	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGTCTTGTGAGAGGTTG	NA	False	NA	10	True	AATAAA	-17	NA	47022407	47036466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47023311_47024833_47024998_47025386_47025471_47031253_47031357_47031437_47031572_47032108_47032221_47032595_47032805_47033169_47033366_47033547_47033625_47034037_47034171_47034249_47034456_47034599_47034954_47035316_47035434_47035552_47035631_47035750_47035891_47036113
ENSMUSG00000002763.17_1	chr17	+	3181	17	FSM	ENSMUSG00000002763.17	ENSMUST00000002840.9	3200	17	18	1	5	-1	multi-exon	TRUE	canonical	3	74	junction_1	12.2574913318346	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGTCTTGTGAGAGGTTG	NA	False	NA	10	True	AATAAA	-17	NA	47022406	47036466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47023311_47024833_47024998_47025386_47025471_47031253_47031357_47031437_47031572_47032108_47032221_47032595_47032805_47033169_47033366_47033547_47033625_47034037_47034171_47034249_47034456_47034599_47034662_47034844_47034954_47035316_47035434_47035552_47035631_47035750_47035891_47036113
ENSMUSG00000002767.14_3	chr17	+	1015	7	FSM	ENSMUSG00000002767.14	ENSMUST00000002844.14	1031	7	15	1	1	0	multi-exon	FALSE	canonical	3	984	junction_4	70.4430423975443	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTTACTACCTTTTCAC	NA	False	NA	27	True	AATAAA	-16	NA	46957169	46961057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
ENSMUSG00000002767.14_4	chr17	+	1004	7	FSM	ENSMUSG00000002767.14	ENSMUST00000113429.8	998	7	-6	0	1	0	multi-exon	FALSE	canonical	3	97	junction_4	389.469903273097	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTTACTACCTTTTCAC	NA	False	NA	27	True	AATAAA	-16	NA	46957169	46961057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959595_46959696_46959960_46960035_46960809
ENSMUSG00000002768.9_2	chr17	+	805	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233430.2	945	4	139	1	1	-1	multi-exon	FALSE	canonical	3	590	junction_1	155.5913450892	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCCACACCGCCTGTGC	NA	False	NA	-5	True	AATAAA	-20	NA	46992050	46994027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644
ENSMUSG00000002768.9_4	chr17	+	830	4	FSM	ENSMUSG00000002768.9	ENSMUST00000002845.8	859	4	15	14	15	-5	multi-exon	FALSE	canonical	3	90	junction_1	390.850639275699	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAGAAGCCACACCGCCT	NA	False	NA	-9	True	AATAAA	-16	NA	46992064	46994023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46992132_46992542_46992824_46992934_46993038_46993644
ENSMUSG00000002768.9_8	chr17	+	768	3	FSM	ENSMUSG00000002768.9	ENSMUST00000233385.2	757	3	224	-235	224	-1	multi-exon	FALSE	canonical	3	900	junction_1	18.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCCACACCGCCTGTGC	NA	False	NA	-5	True	AATAAA	-20	NA	46992541	46994027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46992824_46992934_46993038_46993644
ENSMUSG00000002769.10_0	chr17	-	1033	6	FSM	ENSMUSG00000002769.10	ENSMUST00000002846.9	1035	6	-2	4	-2	-4	multi-exon	FALSE	canonical	3	17	junction_3	8.1338797630651	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCCTGTGCCTGGTGTT	2977	False	NA	NA	False	AGTAAA	-19	NA	47040096	47036593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47036898_47036986_47037109_47037194_47037338_47037531_47037643_47038190_47038319_47039871
ENSMUSG00000002778.15_0	chr7	+	1538	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	53	8	0	-5	multi-exon	TRUE	canonical	3	208	junction_1	16.5378354085412	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTCTCTTTGCTGTTCCC	3997	False	NA	9	True	AATAAA	-13	NA	45522248	45533148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUSG00000002778.15_2	chr7	+	1260	4	ISM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	986	10	631	-7	3prime_fragment	FALSE	canonical	3	225	junction_2	12.2292908852294	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCTTTGCTGTTC	4930	False	NA	7	True	AATAAA	-11	NA	45523181	45533146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUSG00000002778.15_4	chr7	+	1308	5	FSM	ENSMUSG00000002778.15	ENSMUST00000211234.2	832	5	3	-479	3	-3	multi-exon	FALSE	canonical	2	3	junction_1	102.020524895729	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTTTGCTGTTCCCTG	4302	False	NA	11	True	AATAAA	-15	NA	45522553	45533150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45522599_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUSG00000002778.15_6	chr7	+	854	2	FSM	ENSMUSG00000002778.15	ENSMUST00000211495.2	693	2	211	-372	211	-4	multi-exon	FALSE	canonical	3	233	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCTCTTTGCTGTTCCCT	1455	False	NA	10	True	AATAAA	-14	NA	45531071	45533149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45531177_45532400
ENSMUSG00000002778.15_8	chr7	+	178	1	ISM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	10777	6	2112	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTTTGCTGTTCCCTG	3356	False	NA	11	True	AATAAA	-15	NA	45532972	45533150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45533000_45533200
ENSMUSG00000002781.20_0	chr7	+	2165	8	FSM	ENSMUSG00000002781.20	ENSMUST00000069772.16	2297	8	127	5	-10	-1	multi-exon	FALSE	canonical	3	12	junction_1	17.4414472344658	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACTCTGGAGTAGTGTG	5619	False	NA	2	True	AATAAA	-9	NA	45546491	45566832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
ENSMUSG00000002781.20_14	chr7	+	1469	1	Genic_Genomic	ENSMUSG00000002781.20	novel	NA	NA	NA	NA	1046	1099	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATTAAAAAAGGAA	1137	False	NA	NA	False	NA	NA	NA	45566467	45567936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_+_45566500_45567900
ENSMUSG00000002781.20_15	chr7	+	2190	7	NIC	ENSMUSG00000002781.20	novel	2466	7	NA	NA	29	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	22.2760459288048	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCTTAATAACTCTGGAG	6003	False	NA	-5	True	AATAAA	-2	NA	45546875	45566825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45547174_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
ENSMUSG00000002781.20_16	chr7	+	1971	6	ISM	ENSMUSG00000002781.20	ENSMUST00000209292.2	2026	7	386	2	44	2	3prime_fragment	FALSE	canonical	1	2	junction_3	22.0871003076456	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGGAGTAGTGTGGCT	6018	False	NA	5	True	AATAAA	-12	NA	45546890	45566835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45547091_45549055_45549161_45556341_45556537_45558745_45559026_45565506_45565697_45565834
ENSMUSG00000002781.20_2	chr7	+	2259	7	FSM	ENSMUSG00000002781.20	ENSMUST00000209292.2	2026	7	-238	5	-98	-1	multi-exon	FALSE	canonical	1	2	junction_4	23.5401548187111	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACTCTGGAGTAGTGTG	5394	False	NA	2	True	AATAAA	-9	NA	45546266	45566832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45558745_45559026_45565506_45565697_45565834
ENSMUSG00000002781.20_4	chr7	+	2107	7	FSM	ENSMUSG00000002781.20	ENSMUST00000209350.2	2466	7	358	1	36	-1	multi-exon	FALSE	canonical	3	48	junction_2	6.94422221866655	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACTCTGGAGTAGTGTG	6010	False	NA	2	True	AATAAA	-9	NA	45546882	45566832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
ENSMUSG00000002781.20_7	chr7	+	1994	6	NIC	ENSMUSG00000002781.20	novel	2466	7	NA	NA	44	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	24.0116638323961	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACTCTGGAGTAGTGTG	6018	False	NA	2	True	AATAAA	-9	NA	45546890	45566832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45547091_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
ENSMUSG00000002797.10_0	chr6	-	861	4	FSM	ENSMUSG00000002797.10	ENSMUST00000131475.2	3960	4	28	3071	28	-3	multi-exon	FALSE	canonical	3	101	junction_2	27.1947707391615	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGATGGCCGTGGGTTCT	2728	False	NA	-5	True	ATTAAA	-29	NA	54969907	54962635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_54962987_54963817_54963954_54966396_54966543_54969679
ENSMUSG00000002797.10_1	chr6	-	750	4	FSM	ENSMUSG00000002797.10	ENSMUST00000204301.3	431	4	-35	-284	-33	0	multi-exon	FALSE	canonical	3	46	junction_2	52.7320269538984	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGCCGTGGGTTCTCCT	2754	False	NA	-2	True	ATTAAA	-32	NA	54969881	54962632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_54962987_54963817_54963954_54966484_54966543_54969679
ENSMUSG00000002799.7_1	chr12	-	5129	26	FSM	ENSMUSG00000002799.7	ENSMUST00000075827.5	5106	26	-34	11	-34	-11	multi-exon	FALSE	canonical	3	8	junction_25	7.23723704185513	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACTTAAACGTTTTGGC	NA	False	NA	-28	True	ATTAAA	-25	NA	112893430	112871449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_112873006_112873172_112873330_112874063_112874196_112874678_112874928_112875322_112875439_112875528_112875643_112876148_112876235_112876312_112876341_112876784_112876902_112877009_112877124_112877235_112877350_112877555_112877670_112877745_112877899_112877976_112878128_112878817_112878992_112879090_112879138_112879224_112879339_112879499_112879614_112879953_112880068_112880223_112880344_112880428_112880560_112883691_112883753_112883850_112884103_112885619_112885678_112892501_112892853_112893038
ENSMUSG00000002799.7_13	chr12	-	729	1	ISM	ENSMUSG00000002799.7	ENSMUST00000075827.5	5106	26	21226	3	1818	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGTTTTGGCCTCCCTGT	NA	False	NA	-20	True	ATTAAA	-33	NA	112872170	112871441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_112871400_112872200
ENSMUSG00000002799.7_3	chr12	-	4274	23	ISM	ENSMUSG00000002799.7	ENSMUST00000075827.5	5106	26	9344	15	-3113	-15	3prime_fragment	FALSE	canonical	3	18	junction_12	5.54042245607097	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAATAACTTAAACGTTT	NA	False	NA	-32	True	ATTAAA	-21	NA	112884052	112871453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_112873006_112873172_112873330_112874063_112874196_112874678_112874928_112875322_112875439_112875528_112875643_112876148_112876235_112876312_112876341_112876784_112876902_112877009_112877124_112877235_112877350_112877555_112877670_112877745_112877899_112877976_112878128_112878817_112878992_112879090_112879138_112879224_112879339_112879499_112879614_112879953_112880068_112880223_112880344_112880428_112880560_112883691_112883753_112883850
ENSMUSG00000002799.7_8	chr12	-	4103	25	NIC	ENSMUSG00000002799.7	novel	5106	26	NA	NA	3	572	combination_of_known_junctions	FALSE	canonical	1	2	junction_16	8.70344759276461	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAACGGAGTATTCTCG	NA	False	NA	NA	False	TATAAA	-23	NA	112893393	112872324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_112873006_112873172_112873330_112874063_112874196_112874678_112874928_112875322_112875439_112875528_112875643_112876148_112876235_112876312_112876341_112876784_112876902_112877009_112877124_112877235_112877350_112877555_112877670_112877745_112877899_112877976_112878128_112878817_112878992_112879090_112879138_112879499_112879614_112879953_112880068_112880223_112880344_112880428_112880560_112883691_112883753_112883850_112884103_112885619_112885678_112892501_112892853_112893038
ENSMUSG00000002803.15_10	chr12	+	2101	4	ISM	ENSMUSG00000002803.15	ENSMUST00000165079.8	1975	5	8	-2	3	2	intron_retention	FALSE	canonical	3	10	junction_1	18.3726850393609	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAGAACCAAATGTAGAT	NA	False	NA	NA	False	AATAAA	-11	NA	112940109	112942552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112940133_112940295_112940603_112940678_112940770_112940872
ENSMUSG00000002803.15_12	chr12	+	2285	2	ISM	ENSMUSG00000002803.15	ENSMUST00000220567.2	832	3	-29	-1292	-5	2	intron_retention	FALSE	canonical	3	52	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAGAACCAAATGTAGAT	NA	False	NA	NA	False	AATAAA	-11	NA	112940164	112942552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112940770_112940872
ENSMUSG00000002803.15_2	chr12	+	1967	5	FSM	ENSMUSG00000002803.15	ENSMUST00000165079.8	1975	5	8	0	3	0	multi-exon	FALSE	canonical	3	10	junction_1	16.3152535990097	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAACAAGAACCAAATGTAG	NA	False	NA	NA	False	AATAAA	-9	NA	112940109	112942550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112940133_112940295_112940603_112940678_112940770_112940872_112940992_112941123
ENSMUSG00000002803.15_3	chr12	+	2082	4	FSM	ENSMUSG00000002803.15	ENSMUST00000221104.2	2085	4	-10	13	-10	2	multi-exon	FALSE	canonical	3	44	junction_3	3.55902608401044	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAGAACCAAATGTAGAT	NA	False	NA	NA	False	AATAAA	-11	NA	112940159	112942552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112940603_112940678_112940770_112940872_112940992_112941123
ENSMUSG00000002803.15_5	chr12	+	2215	3	FSM	ENSMUSG00000002803.15	ENSMUST00000223368.2	691	3	-288	-1236	-13	0	multi-exon	FALSE	canonical	3	45	junction_1	3.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAACAAGAACCAAATGTAG	NA	False	NA	NA	False	AATAAA	-9	NA	112940156	112942550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112940603_112940678_112940770_112940872
ENSMUSG00000002803.15_7	chr12	+	1988	3	FSM	ENSMUSG00000002803.15	ENSMUST00000223287.2	800	3	-24	-1164	-7	2	multi-exon	FALSE	canonical	0	0	junction_1	22	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAGAACCAAATGTAGAT	NA	False	NA	NA	False	AATAAA	-11	NA	112940162	112942552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112940603_112940872_112940992_112941123
ENSMUSG00000002803.15_8	chr12	+	2165	3	FSM	ENSMUSG00000002803.15	ENSMUST00000220567.2	832	3	-38	-1295	-14	5	multi-exon	FALSE	canonical	3	44	junction_2	4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAACCAAATGTAGATAAG	NA	False	NA	NA	False	AATAAA	-14	NA	112940155	112942555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112940770_112940872_112940992_112941123
ENSMUSG00000002803.15_9	chr12	+	1237	1	ISM	ENSMUSG00000002803.15	ENSMUST00000221104.2	2085	4	1146	13	750	2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAGAACCAAATGTAGAT	NA	False	NA	NA	False	AATAAA	-11	NA	112941315	112942552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112941300_112942600
ENSMUSG00000002804.5_0	chr12	-	801	5	FSM	ENSMUSG00000002804.5	ENSMUST00000221397.2	1241	5	-1	441	-1	-3	multi-exon	FALSE	canonical	3	180	junction_2	18.0277563773199	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGATGTCCGCTGGCTTTG	8846	False	NA	-9	True	AATAAA	-16	NA	112905745	112898351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_112898671_112901975_112902214_112902414_112902480_112902898_112902943_112905610
ENSMUSG00000002804.5_1	chr12	-	552	4	FSM	ENSMUSG00000002804.5	ENSMUST00000221497.2	355	4	-5	-192	2	-4	multi-exon	FALSE	canonical	2	11	junction_1	100.422441051125	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGATGTCCGCTGGCTTT	8856	False	NA	-10	True	AATAAA	-15	NA	112905735	112898352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_112898671_112902414_112902480_112902898_112902943_112905610
ENSMUSG00000002804.5_3	chr12	-	769	5	FSM	ENSMUSG00000002804.5	ENSMUST00000002881.5	734	5	-13	-22	-6	-4	multi-exon	FALSE	canonical	3	29	junction_2	82.3995600716412	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGATGTCCGCTGGCTTT	8841	False	NA	-10	True	AATAAA	-15	NA	112905750	112898352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_112898671_112901975_112902178_112902414_112902480_112902898_112902943_112905610
ENSMUSG00000002808.8_0	chr13	-	2212	3	FSM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	26	125	10	-125	multi-exon	FALSE	canonical	3	59	junction_2	5.5	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAATTATTCTTTGATGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	19803948	19776000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_19777519_19778616_19778826_19803463
ENSMUSG00000002808.8_1	chr13	-	418	1	ISM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	27657	24	27591	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATCAAAACCAAATTGGT	NA	False	NA	NA	False	AATAAA	-34	NA	19776317	19775899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_19775900_19776300
ENSMUSG00000002812.5_2	chr11	-	4002	30	NNC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	3	-12	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_19	52.3939163762945	199	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATTAAAAAATCAGTACT	NA	False	NA	NA	False	ATTAAA	-14	NA	60618046	60604980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611321_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
ENSMUSG00000002812.5_3	chr11	-	4009	30	FSM	ENSMUSG00000002812.5	ENSMUST00000002889.5	4060	30	43	8	3	-8	multi-exon	TRUE	canonical	3	227	junction_19	35.2603363548522	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAATCAGTACTTTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	60618046	60604976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
ENSMUSG00000002814.16_1	chr11	-	3628	19	FSM	ENSMUSG00000002814.16	ENSMUST00000002891.11	3741	19	106	7	5	-6	multi-exon	FALSE	canonical	3	121	junction_8	18.9965071513323	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATATTTTCTGGTGGCA	NA	False	NA	-6	True	AATAAA	-9	NA	60668085	60630890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60631528_60633261_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
ENSMUSG00000002814.16_11	chr11	-	3781	18	NIC	ENSMUSG00000002814.16	novel	3741	19	NA	NA	5	-9	intron_retention	FALSE	canonical	3	121	junction_8	19.1988321444129	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCCATATTTTCTGGTG	NA	False	NA	-9	True	AATAAA	-6	NA	60668085	60630893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60631528_60633261_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
ENSMUSG00000002814.16_31	chr11	-	3216	18	FSM	ENSMUSG00000002814.16	ENSMUST00000102668.10	3542	18	1	325	0	18	multi-exon	FALSE	canonical	3	121	junction_7	18.3744218184581	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATCTTTCATCTGCATT	NA	False	NA	NA	False	AATAAA	-16	NA	60668090	60633041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
ENSMUSG00000002814.16_5	chr11	-	3523	20	NIC	ENSMUSG00000002814.16	novel	2932	20	NA	NA	-7	-9	combination_of_known_junctions	FALSE	canonical	2	18	junction_19	35.8833907056155	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCCATATTTTCTGGTG	NA	False	NA	-9	True	AATAAA	-6	NA	60668098	60630893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60631528_60633261_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747_60667903_60668017
ENSMUSG00000002820.7_0	chr9	+	1908	10	FSM	ENSMUSG00000002820.7	ENSMUST00000065005.5	5951	10	16	4027	3	0	multi-exon	FALSE	canonical	3	441	junction_8	36.048663953599	566	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGCCTGGCGTTGTTGA	8650	False	NA	21	True	GATAAA	-13	NA	21176604	21185041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184086_21184207_21184549
ENSMUSG00000002825.9_1	chr9	+	1293	10	FSM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	9	14	1	0	multi-exon	FALSE	canonical	3	687	junction_5	65.5845510263914	602	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTTGTTTTCATTTAAG	2378	False	NA	28	True	TATAAA	-14	NA	21323141	21331556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
ENSMUSG00000002833.12_0	chr17	+	2242	16	FSM	ENSMUSG00000002833.12	ENSMUST00000226053.2	2270	16	28	0	24	0	multi-exon	FALSE	canonical	3	507	junction_6	104.875926694356	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56386661	56407592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ENSMUSG00000002833.12_2	chr17	+	2239	16	NIC	ENSMUSG00000002833.12	novel	2270	16	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	3	309	junction_15	154.811225547618	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56386661	56407592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
ENSMUSG00000002833.12_3	chr17	+	2269	16	FSM	ENSMUSG00000002833.12	ENSMUST00000225843.2	2238	16	-37	6	24	0	multi-exon	FALSE	canonical	3	148	junction_6	179.285421108974	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56386661	56407592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ENSMUSG00000002833.12_6	chr17	+	2239	16	NIC	ENSMUSG00000002833.12	novel	2270	16	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	3	66	junction_6	198.047873000444	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56386661	56407592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403850_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ENSMUSG00000002833.12_9	chr17	+	2266	16	NIC	ENSMUSG00000002833.12	novel	2270	16	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	3	148	junction_6	209.929787204092	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56386661	56407592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
ENSMUSG00000002835.10_0	chr17	+	3336	14	FSM	ENSMUSG00000002835.10	ENSMUST00000002914.10	5535	14	-51	2250	-51	-806	multi-exon	TRUE	canonical	3	392	junction_3	50.5723455079702	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCTCTGTCTTCTGTCTC	NA	False	NA	20	True	TATAAA	-14	NA	56347387	56375026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56347552_56351061_56351113_56353822_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
ENSMUSG00000002835.10_4	chr17	+	3335	14	NNC	ENSMUSG00000002835.10	novel	5535	14	NA	NA	-51	-806	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	132.639565883901	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCTCTGTCTTCTGTCTC	NA	False	NA	20	True	TATAAA	-14	NA	56347387	56375026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_56347552_56351061_56351113_56353822_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370328_56370421_56371000_56371257_56371973_56372426_56374406
ENSMUSG00000002835.10_52	chr17	+	2771	12	ISM	ENSMUSG00000002835.10	ENSMUST00000002914.10	5535	14	6734	2250	359	-806	3prime_fragment	FALSE	canonical	3	392	junction_1	53.6086214849875	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCTCTGTCTTCTGTCTC	NA	False	NA	20	True	TATAAA	-14	NA	56354172	56375026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
ENSMUSG00000002844.10_0	chr16	-	1542	4	FSM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	46	1378	25	-1378	multi-exon	FALSE	canonical	3	1151	junction_2	86.2824818063706	1080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCTTTGTCTGACTTT	NA	False	NA	NA	False	NA	NA	NA	38273019	38265769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_38266467_38267609_38267971_38270490_38270846_38272890
ENSMUSG00000002844.10_1	chr16	-	1590	3	ISM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	2043	1378	2022	-1378	3prime_fragment	FALSE	canonical	3	1151	junction_2	92.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCTTTGTCTGACTTT	NA	False	NA	NA	False	NA	NA	NA	38271022	38265769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_38266467_38267609_38267971_38270490
ENSMUSG00000002844.10_2	chr16	-	1013	2	ISM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	5140	1378	5119	-1378	3prime_fragment	FALSE	canonical	3	1336	junction_1	0	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCTTTGTCTGACTTT	NA	False	NA	NA	False	NA	NA	NA	38267925	38265769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_38266467_38267609
ENSMUSG00000002845.15_13	chr16	+	1640	9	NIC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	-6	37	combination_of_known_junctions	FALSE	canonical	1	87	junction_5	232.101136360855	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGGCTCTGGAGTGAC	7064	False	NA	22	True	AGTAAA	-13	NA	38379053	38411745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000002845.15_14	chr16	+	1843	9	FSM	ENSMUSG00000002845.15	ENSMUST00000163884.8	1645	9	-5	-193	-5	37	multi-exon	FALSE	canonical	1	310	junction_8	142.984210229661	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGGCTCTGGAGTGAC	7065	False	NA	22	True	AGTAAA	-13	NA	38379054	38411745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000002845.15_40	chr16	+	2049	9	FSM	ENSMUSG00000002845.15	ENSMUST00000002924.15	2871	9	42	780	-7	36	multi-exon	FALSE	canonical	1	126	junction_1	222.417084269622	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTGGCTCTGGAGTGA	NA	False	NA	21	True	AGTAAA	-12	NA	38383215	38411744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000002845.15_42	chr16	+	1851	9	FSM	ENSMUSG00000002845.15	ENSMUST00000171687.8	2667	9	38	778	-11	38	multi-exon	FALSE	canonical	1	87	junction_5	275.38779475496	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	23	True	AGTAAA	-14	NA	38383211	38411746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000002845.15_54	chr16	+	1772	8	ISM	ENSMUSG00000002845.15	ENSMUST00000002924.15	2871	9	1303	780	-74	36	3prime_fragment	FALSE	canonical	1	310	junction_7	146.174902226122	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTGGCTCTGGAGTGA	NA	False	NA	21	True	AGTAAA	-12	NA	38384476	38411744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000002846.10_11	chr16	-	667	3	FSM	ENSMUSG00000002846.10	ENSMUST00000147543.2	678	3	9	2	9	-2	multi-exon	FALSE	canonical	3	26	junction_1	91	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCAATTTTAGTATTTA	NA	False	NA	-6	True	ATTAAA	-17	NA	38342994	38337023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_38337233_38338728_38338895_38342702
ENSMUSG00000002846.10_2	chr16	-	1547	7	FSM	ENSMUSG00000002846.10	ENSMUST00000002925.6	1573	7	35	-9	13	9	multi-exon	FALSE	canonical	3	208	junction_6	22.2666916167525	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGATCGCCTAATCATGCC	NA	False	NA	-7	True	AGTAAA	-31	NA	38342990	38318699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38342702
ENSMUSG00000002846.10_3	chr16	-	2858	6	ISM	ENSMUSG00000002846.10	ENSMUST00000002925.6	1573	7	2536	-13	2514	13	3prime_fragment	FALSE	canonical	3	243	junction_2	12.9707362936728	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGCCTAATCATGCCTCAG	1378	False	NA	-3	True	AGTAAA	-35	NA	38340489	38318695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728
ENSMUSG00000002847.8_0	chr16	-	913	5	ISM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	25422	2	10071	-2	3prime_fragment	FALSE	canonical	3	158	junction_2	28.8823042709546	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCATTTTGGTTGTTTTGT	NA	False	NA	-5	True	AATAAA	-18	NA	38228085	38216480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953
ENSMUSG00000002847.8_1	chr16	-	386	1	ISM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	36641	2	21290	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCATTTTGGTTGTTTTGT	NA	False	NA	-5	True	AATAAA	-18	NA	38216866	38216480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_38216500_38216900
ENSMUSG00000002847.8_11	chr16	-	1177	8	ISM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	18341	2	2990	-2	3prime_fragment	FALSE	canonical	3	23	junction_6	83.8969241244935	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCATTTTGGTTGTTTTGT	NA	False	NA	-5	True	AATAAA	-18	NA	38235166	38216480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130
ENSMUSG00000002847.8_13	chr16	-	1357	9	ISM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	17721	2	2370	-2	3prime_fragment	FALSE	canonical	3	19	junction_8	85.3097298085043	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCATTTTGGTTGTTTTGT	NA	False	NA	-5	True	AATAAA	-18	NA	38235786	38216480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679
ENSMUSG00000002847.8_3	chr16	-	1734	11	FSM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	238	2	238	-2	multi-exon	FALSE	canonical	2	3	junction_9	86.6256313108309	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCATTTTGGTTGTTTTGT	NA	False	NA	-5	True	AATAAA	-18	NA	38253269	38216480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679_38235858_38237421_38237624_38253165
ENSMUSG00000002847.8_7	chr16	-	905	5	NNC	ENSMUSG00000002847.8	novel	1974	11	NA	NA	10082	-3	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	83.929658047677	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCATTTTGGTTGTTTTG	NA	False	NA	-6	True	AATAAA	-17	NA	38228074	38216481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_38216898_38217700_38217866_38221233_38221347_38225898_38225989_38227953
ENSMUSG00000002870.9_15	chr6	-	3234	15	ISM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	1263	2	1160	-2	3prime_fragment	FALSE	canonical	1	1040	junction_8	569.809317371404	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCCTTTGGTTCTGGTTT	545	False	NA	-5	True	AATAAA	-14	NA	88874499	88860457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268
ENSMUSG00000002870.9_2	chr6	-	3268	16	FSM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	101	2	-2	-2	multi-exon	FALSE	canonical	1	1040	junction_8	575.928791894739	6762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCCTTTGGTTCTGGTTT	NA	False	NA	-5	True	AATAAA	-14	NA	88875661	88860457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
ENSMUSG00000002871.15_0	chr6	+	1733	12	FSM	ENSMUSG00000002871.15	ENSMUST00000204765.3	1738	12	-14	19	2	-19	multi-exon	FALSE	canonical	3	57	junction_1	17.59319928714	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAAAAGAGTAG	NA	False	NA	-7	True	NA	NA	NA	88879300	88889194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_88879513_88882930_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
ENSMUSG00000002871.15_1	chr6	+	1743	12	NNC	ENSMUSG00000002871.15	novel	1820	12	NA	NA	0	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	33.0236579359567	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAAAAGAGTAG	NA	False	NA	-7	True	NA	NA	NA	88879298	88889194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_88879513_88882922_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
ENSMUSG00000002871.15_31	chr6	+	1822	11	NIC	ENSMUSG00000002871.15	novel	1820	12	NA	NA	-3	-14	intron_retention	TRUE	canonical	3	57	junction_1	18.4325798519903	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAAGAGTAGTAGGT	NA	False	NA	-2	True	NA	NA	NA	88879295	88889199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_88879513_88882930_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887384_88887529_88887633_88887778_88887860_88888664
ENSMUSG00000002881.15_0	chr1	-	3622	8	FSM	ENSMUSG00000002881.15	ENSMUST00000069792.14	3874	8	247	5	-117	-5	multi-exon	FALSE	canonical	3	26	junction_5	3.6922422809486	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATCCTTGCTTAGAGTG	NA	False	NA	-5	True	AATAAA	-16	NA	52539591	52496457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_52498466_52501246_52501364_52503943_52504107_52506048_52506139_52518396_52518449_52520029_52520164_52529079_52529915_52539368
ENSMUSG00000002881.15_1	chr1	-	3602	8	NIC	ENSMUSG00000002881.15	novel	3640	9	NA	NA	-100	-5	combination_of_known_junctions	FALSE	canonical	3	5	junction_3	9.71008312455224	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATCCTTGCTTAGAGTG	NA	False	NA	-5	True	AATAAA	-16	NA	52539574	52496457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_52498466_52501246_52501364_52503943_52504104_52506048_52506139_52518396_52518449_52520029_52520164_52529079_52529915_52539368
ENSMUSG00000002881.15_2	chr1	-	3583	8	NNC	ENSMUSG00000002881.15	novel	3874	8	NA	NA	-74	-5	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	10.4588601244132	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATCCTTGCTTAGAGTG	NA	False	NA	-5	True	AATAAA	-16	NA	52539548	52496457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_52498466_52501246_52501364_52503943_52504107_52506048_52506139_52518396_52518449_52520029_52520164_52529079_52529915_52539364
ENSMUSG00000002881.15_5	chr1	-	1399	1	ISM	ENSMUSG00000002881.15	ENSMUST00000186764.7	3640	9	41605	3	8362	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCTTGCTTAGAGTGCT	6445	False	NA	-3	True	AATAAA	-18	NA	52497854	52496455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_52496500_52497900
ENSMUSG00000002885.15_0	chr8	-	2869	19	FSM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	-8	6	2	-6	multi-exon	FALSE	canonical	3	115	junction_15	26.9886235749276	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGATGGCACGTTTGC	NA	False	NA	-17	True	ATTAAA	-13	NA	84467810	84449998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ENSMUSG00000002885.15_6	chr8	-	3004	20	FSM	ENSMUSG00000002885.15	ENSMUST00000075843.13	3000	20	-12	8	2	-6	multi-exon	FALSE	canonical	3	18	junction_16	54.4176930653952	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGATGGCACGTTTGC	NA	False	NA	-17	True	ATTAAA	-13	NA	84467810	84449998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84458531_84458667_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ENSMUSG00000002885.15_7	chr8	-	2722	18	FSM	ENSMUSG00000002885.15	ENSMUST00000002964.14	2986	18	145	119	2	-6	multi-exon	FALSE	canonical	2	28	junction_14	43.193056599508	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGATGGCACGTTTGC	NA	False	NA	-17	True	ATTAAA	-13	NA	84467810	84449998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ENSMUSG00000002885.15_8	chr8	-	2557	16	ISM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	7670	6	-5173	-6	3prime_fragment	FALSE	canonical	3	115	junction_15	27.4820345357148	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGATGGCACGTTTGC	NA	False	NA	-17	True	ATTAAA	-13	NA	84460132	84449998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042
ENSMUSG00000002897.6_1	chr6	+	3951	13	FSM	ENSMUSG00000002897.6	ENSMUST00000002976.5	7752	13	-32	3833	-32	-3	multi-exon	FALSE	canonical	1	10	junction_10	8.77931596930472	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTCATAGTTGTTATT	280	False	NA	2	True	AATAAA	-15	NA	120440175	120460687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_120440428_120449052_120449078_120449886_120450034_120450714_120450828_120451250_120451378_120452189_120452238_120452416_120452581_120453850_120453935_120454356_120454442_120455124_120455137_120455335_120455444_120456963_120457006_120457943
ENSMUSG00000002897.6_11	chr6	+	4146	12	NIC	ENSMUSG00000002897.6	novel	7752	13	NA	NA	-28	-3	intron_retention	FALSE	canonical	1	13	junction_9	7.46340936428138	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTCATAGTTGTTATT	284	False	NA	2	True	AATAAA	-15	NA	120440179	120460687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120440428_120449052_120449078_120449886_120450034_120450714_120450828_120451250_120451378_120452189_120452238_120452416_120452581_120453850_120453935_120454356_120454442_120455124_120455444_120456963_120457006_120457943
ENSMUSG00000002897.6_4	chr6	+	3934	12	NIC	ENSMUSG00000002897.6	novel	7752	13	NA	NA	-28	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	10.3052582261406	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAACTCATAGTTGTTAT	284	False	NA	1	True	AATAAA	-14	NA	120440179	120460686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120440428_120449052_120449078_120449886_120450034_120450714_120450828_120451250_120451378_120452189_120452238_120452416_120452581_120453850_120453935_120454356_120454442_120455335_120455444_120456963_120457006_120457943
ENSMUSG00000002897.6_9	chr6	+	2210	1	ISM	ENSMUSG00000002897.6	ENSMUST00000204239.3	4804	11	18269	4	7913	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAACTCATAGTTGTTAT	NA	False	NA	1	True	AATAAA	-14	NA	120458476	120460686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_120458500_120460700
ENSMUSG00000002900.18_1	chr12	+	5769	33	FSM	ENSMUSG00000002900.18	ENSMUST00000239496.2	5778	33	7	2	4	-2	multi-exon	FALSE	canonical	3	88	junction_13	20.6626313894794	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACATCCTATGTTTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	31315299	31379636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_31315601_31316689_31316866_31319055_31319192_31322428_31322503_31328460_31328650_31328734_31328799_31332555_31332759_31335624_31335746_31337414_31337604_31337877_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
ENSMUSG00000002900.18_17	chr12	+	4283	24	ISM	ENSMUSG00000002900.18	ENSMUST00000239496.2	5778	33	22618	2	9737	-2	3prime_fragment	FALSE	canonical	3	88	junction_4	22.7468188847624	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACATCCTATGTTTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	31337910	31379636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
ENSMUSG00000002900.18_2	chr12	+	5639	34	FSM	ENSMUSG00000002900.18	ENSMUST00000169088.8	5557	34	62	-144	-1	-2	multi-exon	FALSE	canonical	3	20	junction_1	26.2601941375773	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACATCCTATGTTTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	31315294	31379636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_31315344_31315478_31315601_31316689_31316866_31319055_31319192_31322428_31322503_31328460_31328650_31328734_31328799_31332555_31332759_31335624_31335746_31337414_31337604_31337877_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
ENSMUSG00000002900.18_21	chr12	+	3928	21	ISM	ENSMUSG00000002900.18	ENSMUST00000239496.2	5778	33	32349	0	19468	0	3prime_fragment	FALSE	canonical	3	88	junction_1	23.1544272224558	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATCCTATGTTTCTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	31347641	31379638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
ENSMUSG00000002900.18_28	chr12	+	2060	10	ISM	ENSMUSG00000002900.18	ENSMUST00000239496.2	5778	33	53024	2	-5203	-2	3prime_fragment	FALSE	canonical	3	96	junction_3	19.2930615046504	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACATCCTATGTTTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	31368316	31379636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
ENSMUSG00000002908.18_0	chr8	-	2871	9	NIC	ENSMUSG00000002908.18	novel	4045	10	NA	NA	47	-6	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	8.14612638006556	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGGATTCTGGTGAAAC	NA	False	NA	-7	True	AATAAA	-15	NA	71309605	71295807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71297206_71299138_71299209_71300818_71300947_71301421_71301533_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71309575
ENSMUSG00000002908.18_10	chr8	-	3149	10	NIC	ENSMUSG00000002908.18	novel	2528	11	NA	NA	49	-11	combination_of_known_splicesites	FALSE	canonical	1	3	junction_8	9.4097401598845	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGACTTGGGATTCTGGT	NA	False	NA	-12	True	AATAAA	-10	NA	71315853	71295812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71297206_71299138_71299209_71300843_71300947_71301421_71301533_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71314341_71314418_71315591
ENSMUSG00000002908.18_11	chr8	-	2727	9	NIC	ENSMUSG00000002908.18	novel	2528	11	NA	NA	-65	-243	combination_of_known_junctions	FALSE	canonical	2	5	junction_3	7.48227071148859	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTGCCCATGAGGGCT	NA	False	NA	NA	False	AATAAA	-15	NA	71315716	71296044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71297206_71299138_71299209_71300818_71300947_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71314308_71314418_71315591
ENSMUSG00000002908.18_15	chr8	-	1153	1	ISM	ENSMUSG00000002908.18	ENSMUST00000110081.10	4045	10	12692	1115	6423	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGGATTCTGGTGAAAC	NA	False	NA	-7	True	AATAAA	-15	NA	71296960	71295807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71295800_71297000
ENSMUSG00000002908.18_18	chr8	-	2641	9	NIC	ENSMUSG00000002908.18	novel	2528	11	NA	NA	-3	-242	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	8.55862138431185	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGCCCATGAGGGCTT	NA	False	NA	NA	False	AATAAA	-16	NA	71315654	71296043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71297206_71299138_71299209_71300843_71300947_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71314308_71314418_71315591
ENSMUSG00000002908.18_3	chr8	-	3339	10	NIC	ENSMUSG00000002908.18	novel	2528	11	NA	NA	-83	-11	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	5.77350269189626	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGACTTGGGATTCTGGT	NA	False	NA	-12	True	AATAAA	-10	NA	71315985	71295812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71297206_71299138_71299209_71300818_71300947_71301421_71301533_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71314308_71314418_71315591
ENSMUSG00000002908.18_5	chr8	-	3343	10	NIC	ENSMUSG00000002908.18	novel	2528	11	NA	NA	-115	-6	combination_of_known_junctions	FALSE	canonical	1	3	junction_8	8.20719347227528	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGGATTCTGGTGAAAC	NA	False	NA	-7	True	AATAAA	-15	NA	71316017	71295807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71297206_71299138_71299209_71300818_71300947_71301421_71301533_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71314341_71314418_71315591
ENSMUSG00000002908.18_6	chr8	-	3003	10	NIC	ENSMUSG00000002908.18	novel	2528	11	NA	NA	-20	-8	combination_of_known_splicesites	FALSE	canonical	3	6	junction_2	7.6610285226392	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTGGGATTCTGGTGAA	NA	False	NA	-9	True	AATAAA	-13	NA	71315671	71295809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71297206_71299138_71299209_71300843_71300947_71301421_71301533_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71314308_71314418_71315591
ENSMUSG00000002908.18_9	chr8	-	2860	9	NIC	ENSMUSG00000002908.18	novel	4045	10	NA	NA	28	-11	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	9.57862203033401	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGACTTGGGATTCTGGT	NA	False	NA	-12	True	AATAAA	-10	NA	71309624	71295812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71297206_71299138_71299209_71300843_71300947_71301421_71301533_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71309575
ENSMUSG00000002910.12_0	chr8	-	1916	7	ISM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	515	6	313	-4	intron_retention	FALSE	canonical	0	0	junction_5	38.4476556141232	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACACTGGGCCGTCTTTT	NA	False	NA	-7	True	AATAAA	-14	NA	71291849	71287778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622
ENSMUSG00000002910.12_1	chr8	-	2162	8	FSM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	187	6	-15	-4	multi-exon	FALSE	canonical	0	0	junction_5	35.6330504688314	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACACTGGGCCGTCTTTT	NA	False	NA	-7	True	AATAAA	-14	NA	71292177	71287778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622_71291690_71291771
ENSMUSG00000002910.12_2	chr8	-	140	1	FSM	ENSMUSG00000002910.12	ENSMUST00000213095.2	1459	1	1310	9	1310	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGACACTGGGCCGTCT	NA	False	NA	-10	True	AATAAA	-11	NA	71287921	71287781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71287800_71287900
ENSMUSG00000002910.12_6	chr8	-	2244	7	NIC	ENSMUSG00000002910.12	novel	2355	8	NA	NA	-15	-1	intron_retention	FALSE	canonical	0	0	junction_4	37.4640568486056	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCCGTCTTTTCATTT	NA	False	NA	-2	True	AATAAA	-19	NA	71292177	71287773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290191_71291337_71291486_71291622_71291690_71291771
ENSMUSG00000002948.20_0	chr8	+	3387	11	FSM	ENSMUSG00000002948.20	ENSMUST00000110998.9	3497	11	102	8	13	-8	multi-exon	FALSE	canonical	3	271	junction_7	24.9617707705203	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCCGAGTCTGGTGTCC	NA	False	NA	11	True	AATAAA	-12	NA	4288841	4297888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694
ENSMUSG00000002948.20_1	chr8	+	3478	10	NIC	ENSMUSG00000002948.20	novel	3497	11	NA	NA	10	-8	intron_retention	FALSE	canonical	3	277	junction_9	23.6366528515501	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCCGAGTCTGGTGTCC	NA	False	NA	11	True	AATAAA	-12	NA	4288838	4297888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294776_4294860_4295004_4295542_4295589_4295694
ENSMUSG00000002948.20_42	chr8	+	1419	1	ISM	ENSMUSG00000002948.20	ENSMUST00000110998.9	3497	11	7730	8	-203	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCCGAGTCTGGTGTCC	NA	False	NA	11	True	AATAAA	-12	NA	4296469	4297888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_4296500_4297900
ENSMUSG00000002949.16_4	chr8	-	1774	13	FSM	ENSMUSG00000002949.16	ENSMUST00000003029.14	1790	13	9	7	9	-7	multi-exon	FALSE	canonical	3	458	junction_5	35.4920765805553	599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCAGTTTGAACGGTTT	NA	False	NA	-20	True	AATAAA	-15	NA	4325904	4309737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
ENSMUSG00000002957.12_0	chr7	+	4565	22	NNC	ENSMUSG00000002957.12	novel	4646	22	NA	NA	32	-17	at_least_one_novel_splicesite	FALSE	canonical	3	207	junction_7	117.945873284924	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACAGGAAACTGGAACAT	9663	False	NA	11	True	AATAAA	-5	NA	141142152	141212907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_141142340_141168198_141168268_141177385_141177529_141178614_141178809_141182145_141182276_141184821_141184924_141189719_141189829_141191245_141191397_141192541_141192711_141194111_141194250_141199363_141199547_141200384_141200483_141200704_141200937_141201027_141201202_141203530_141203695_141206020_141206104_141207806_141207897_141209102_141209227_141209971_141210089_141210197_141210268_141210349_141210485_141211204
ENSMUSG00000002957.12_1	chr7	+	4561	22	FSM	ENSMUSG00000002957.12	ENSMUST00000003038.12	4646	22	68	17	33	-17	multi-exon	FALSE	canonical	3	504	junction_7	69.5768877620837	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACAGGAAACTGGAACAT	9664	False	NA	11	True	AATAAA	-5	NA	141142153	141212907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_141142340_141168198_141168268_141177385_141177529_141178614_141178809_141182145_141182276_141184821_141184924_141189719_141189829_141191248_141191397_141192541_141192711_141194111_141194250_141199363_141199547_141200384_141200483_141200704_141200937_141201027_141201202_141203530_141203695_141206020_141206104_141207806_141207897_141209102_141209227_141209971_141210089_141210197_141210268_141210349_141210485_141211204
ENSMUSG00000002963.18_0	chr7	+	1762	17	FSM	ENSMUSG00000002963.18	ENSMUST00000107876.8	1770	17	7	1	-5	0	multi-exon	FALSE	canonical	3	28	junction_1	53.8118466859297	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCACAGCCATCTTGCTGG	9322	False	NA	14	True	AATAAA	-16	NA	44506569	44512073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44506727_44506818_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ENSMUSG00000002963.18_2	chr7	+	1664	16	FSM	ENSMUSG00000002963.18	ENSMUST00000003044.14	2184	16	177	343	-4	0	multi-exon	FALSE	canonical	3	182	junction_9	24.7059147214229	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCACAGCCATCTTGCTGG	9512	False	NA	14	True	AATAAA	-16	NA	44506759	44512073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ENSMUSG00000002968.10_15	chr7	-	2303	18	FSM	ENSMUSG00000002968.10	ENSMUST00000003049.8	2619	18	309	7	-2	0	multi-exon	FALSE	canonical	3	744	junction_9	66.5493546850497	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCCCGGCTCCCGTG	6964	False	NA	-13	True	AATAAA	-10	NA	44541827	44528814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ENSMUSG00000002968.10_17	chr7	-	2231	17	NIC	ENSMUSG00000002968.10	novel	2619	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_3	203.468018064265	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCCCGGCTCCCGTG	6964	False	NA	-13	True	AATAAA	-10	NA	44541827	44528814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44528939_44529350_44529529_44529675_44529895_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ENSMUSG00000002968.10_2	chr7	-	3693	18	FSM	ENSMUSG00000002968.10	ENSMUST00000208253.2	3693	18	-12	12	-2	-12	multi-exon	FALSE	canonical	3	62	junction_1	207.582576223432	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGATTATCTTTCTGGC	6964	False	NA	-16	True	NA	NA	NA	44541827	44526200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44527715_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ENSMUSG00000002968.10_29	chr7	-	2306	18	NIC	ENSMUSG00000002968.10	novel	2619	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	175	junction_9	180.66160609536	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCCCGGCTCCCGTG	6964	False	NA	-13	True	AATAAA	-10	NA	44541827	44528814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533675_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
ENSMUSG00000002980.15_0	chr7	-	2370	15	FSM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	51	8	-1	-8	multi-exon	TRUE	canonical	3	510	junction_11	49.5145824737624	882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTTCCTACCGCCAGGT	3963	False	NA	-13	True	AATAAA	-18	NA	19504421	19490063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19490545_19490632_19490751_19492348_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
ENSMUSG00000002980.15_19	chr7	-	2094	13	ISM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	3549	9	3497	-9	3prime_fragment	FALSE	canonical	3	510	junction_11	53.1718257684984	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACTTTCCTACCGCCAGG	7461	False	NA	-14	True	AATAAA	-17	NA	19500923	19490064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19490545_19490632_19490751_19492348_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760
ENSMUSG00000002981.11_0	chr7	-	2452	14	FSM	ENSMUSG00000002981.11	ENSMUST00000055242.11	4143	14	13	1678	1	0	multi-exon	FALSE	canonical	3	1363	junction_5	136.704319631521	2646	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCAACCACCGCACCTC	5161	False	NA	-17	True	AATAAA	-21	NA	19398945	19367173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19367888_19367980_19368149_19368802_19368939_19369232_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372163_19372856_19372943_19376976_19377095_19379766_19379926_19380640_19380765_19389642_19389756_19398858
ENSMUSG00000002983.18_2	chr7	-	2179	11	FSM	ENSMUSG00000002983.18	ENSMUST00000049912.15	2200	11	15	6	15	0	multi-exon	FALSE	canonical	3	48	junction_10	60.3088716525189	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	19363348	19340147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361896_19363115
ENSMUSG00000002983.18_3	chr7	-	2319	11	NIC	ENSMUSG00000002983.18	novel	2200	11	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_10	54.7927002437368	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	19362373	19340147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361896_19362000
ENSMUSG00000002983.18_4	chr7	-	2295	11	NNC	ENSMUSG00000002983.18	novel	2200	11	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	71.0836830784675	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	19362334	19340147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361911_19362000
ENSMUSG00000002984.18_5	chr7	-	1632	9	FSM	ENSMUSG00000002984.18	ENSMUST00000032555.10	1646	9	7	7	7	-7	multi-exon	TRUE	canonical	3	2643	junction_3	135.037899772619	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATACGTGGAAAAAAAAATA	9901	False	NA	-36	True	NA	NA	NA	19449343	19435260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905
ENSMUSG00000002984.18_6	chr7	-	1543	10	FSM	ENSMUSG00000002984.18	ENSMUST00000093552.12	1577	10	10	24	0	-8	multi-exon	FALSE	canonical	3	2342	junction_9	200.868177398407	2377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATACGTGGAAAAAAAAAT	9891	False	NA	-37	True	NA	NA	NA	19449353	19435261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905_19449185_19449282
ENSMUSG00000002985.17_0	chr7	-	1107	4	FSM	ENSMUSG00000002985.17	ENSMUST00000174064.9	1408	4	137	164	-1	-1	multi-exon	FALSE	canonical	3	8700	junction_3	835.854984764436	6059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCTGAGTCTCTGTGAG	NA	False	NA	-31	True	AATAAA	-13	NA	19432976	19430197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432935
ENSMUSG00000002985.17_1	chr7	-	611	1	FSM	ENSMUSG00000002985.17	ENSMUST00000207525.2	897	1	748	-462	748	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCTGAGTCTCTGTGAG	NA	False	NA	-31	True	AATAAA	-13	NA	19430808	19430197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19430200_19430800
ENSMUSG00000002985.17_4	chr7	-	1067	3	FSM	ENSMUSG00000002985.17	ENSMUST00000173739.8	1221	3	153	1	-7	-1	multi-exon	FALSE	canonical	3	10421	junction_2	50	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCTGAGTCTCTGTGAG	NA	False	NA	-31	True	AATAAA	-13	NA	19432179	19430197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19431029_19431403_19431573_19432112
ENSMUSG00000002996.18_0	chr12	-	2601	11	FSM	ENSMUSG00000002996.18	ENSMUST00000172314.9	3142	11	317	224	3	-224	multi-exon	FALSE	canonical	3	134	junction_10	30.1004983347452	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAGGAAAAAAAAGG	NA	False	NA	-30	True	NA	NA	NA	32000217	31976476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
ENSMUSG00000002996.18_1	chr12	-	2579	10	ISM	ENSMUSG00000002996.18	ENSMUST00000172314.9	3142	11	6522	224	-3606	-224	3prime_fragment	FALSE	canonical	3	196	junction_6	14.3070387580621	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAGGAAAAAAAAGG	2967	False	NA	-30	True	NA	NA	NA	31994012	31976476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827
ENSMUSG00000002996.18_20	chr12	-	2105	9	FSM	ENSMUSG00000002996.18	ENSMUST00000167458.9	2733	9	5	623	3	-623	multi-exon	FALSE	canonical	3	134	junction_8	33.3164280048147	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCAATAGCTCTCTGGG	NA	False	NA	NA	False	ATTAAA	-20	NA	32000217	31980004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
ENSMUSG00000002996.18_9	chr12	-	2702	11	NIC	ENSMUSG00000002996.18	novel	3142	11	NA	NA	3	-214	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	68.426310729134	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAAGGTCTGTCTTTG	NA	False	NA	-20	True	AATAAA	-4	NA	32000217	31976466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000103
ENSMUSG00000002997.16_0	chr12	-	3376	11	FSM	ENSMUSG00000002997.16	ENSMUST00000036497.16	3378	11	-4	6	-4	-2	multi-exon	FALSE	canonical	2	12	junction_4	4.56508488420533	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACGTTCCAAGCATGG	NA	False	NA	NA	False	AATAAA	-13	NA	32111299	32008480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_32010522_32012997_32013137_32013896_32013963_32015113_32015189_32017211_32017314_32022048_32022203_32025917_32026025_32037878_32037963_32043729_32043783_32088620_32088657_32110780
ENSMUSG00000002997.16_3	chr12	-	1502	12	FSM	ENSMUSG00000002997.16	ENSMUST00000003079.12	1657	12	149	6	149	-2	multi-exon	FALSE	canonical	2	2	junction_1	6.20849857416868	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACGTTCCAAGCATGG	NA	False	NA	NA	False	AATAAA	-13	NA	32111085	32008480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_32008721_32010380_32010522_32012997_32013137_32013896_32013963_32015113_32015189_32017211_32017314_32022048_32022203_32025917_32026025_32037878_32037963_32043729_32043783_32088620_32088657_32110780
ENSMUSG00000003031.15_0	chr6	+	589	1	ISM	ENSMUSG00000003031.15	ENSMUST00000067327.11	4552	2	4519	5	4407	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATTTATTGAGTGCAAC	3793	False	NA	8	True	AATAAA	-13	NA	134901882	134902471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_134901900_134902500
ENSMUSG00000003032.9_0	chr4	-	3037	5	FSM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	-11	3	-11	-3	multi-exon	FALSE	canonical	3	1140	junction_2	61.7267162580353	2874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGACAATCTCTTTGTTT	-2	True	NA	-10	True	AATAAA	-18	NA	55532477	55527145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_55528301_55529717_55529883_55529998_55530984_55531629_55531751_55531866
ENSMUSG00000003032.9_4	chr4	-	1898	3	ISM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	1890	3	1194	-3	3prime_fragment	FALSE	canonical	3	1140	junction_2	58	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGACAATCTCTTTGTTT	2750	False	NA	-10	True	AATAAA	-18	NA	55530576	55527145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_55528301_55529717_55529883_55529998
ENSMUSG00000003033.16_0	chr8	+	1999	12	FSM	ENSMUSG00000003033.16	ENSMUST00000003117.15	2084	12	79	6	1	-6	multi-exon	FALSE	canonical	3	513	junction_9	40.3802177244139	671	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGCTGCCTGTCTTCTCT	NA	False	NA	13	True	ATTAAA	-14	NA	72993940	73011223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
ENSMUSG00000003037.17_0	chr8	+	1775	8	FSM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	145	2630	-14	-2630	multi-exon	FALSE	canonical	3	900	junction_6	72.9808473617062	908	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTCACCTGCCCTCCCC	NA	False	NA	18	True	ATTAAA	-15	NA	72915188	72935118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
ENSMUSG00000003038.16_0	chr4	-	1158	6	FSM	ENSMUSG00000003038.16	ENSMUST00000102553.11	1265	6	96	11	3	-11	multi-exon	FALSE	canonical	3	1307	junction_3	652.309558415328	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTGGAATGCTGCCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	133695216	133692059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
ENSMUSG00000003038.16_2	chr4	-	1127	7	NNC	ENSMUSG00000003038.16	novel	676	7	NA	NA	3	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1026.87319351298	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTAGGCTTGGAATGCT	NA	False	NA	NA	False	AATAAA	-8	NA	133695216	133692065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_133692276_133692300_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
ENSMUSG00000003039.10_0	chr8	+	1759	3	ISM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	17	988	17	0	intron_retention	FALSE	canonical	3	987	junction_1	5.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTTTGTGCGTGAAAC	NA	False	NA	18	True	AATATA	-14	NA	72973590	72977274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_72973705_72973784_72973927_72975771
ENSMUSG00000003039.10_1	chr8	+	1151	4	FSM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	17	1396	17	-408	multi-exon	FALSE	canonical	3	920	junction_3	34.4705993887867	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGAGTGTGAATGTTGTCT	NA	False	NA	14	True	AATAAA	-14	NA	72973590	72976866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72973705_72973784_72973927_72975771_72975826_72976025
ENSMUSG00000003051.14_1	chr1	-	1918	9	FSM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	-19	2	-19	-2	multi-exon	FALSE	canonical	3	367	junction_7	94.095363860288	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTGGCCTGAGCTCTCT	NA	False	NA	-12	True	AATAAA	-21	NA	135186195	135181318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
ENSMUSG00000003051.14_2	chr1	-	1978	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	111	6	-19	-2	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTGGCCTGAGCTCTCT	NA	False	NA	-12	True	AATAAA	-21	NA	135186195	135181318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
ENSMUSG00000003062.14_0	chr13	-	1282	9	FSM	ENSMUSG00000003062.14	ENSMUST00000039694.13	1327	9	38	7	-2	-4	multi-exon	FALSE	canonical	3	699	junction_8	60.3857392105123	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGATGATTGTGTGTTG	NA	False	NA	-7	True	AATAAA	-12	NA	19579927	19541852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
ENSMUSG00000003062.14_20	chr13	-	1147	8	FSM	ENSMUSG00000003062.14	ENSMUST00000200323.3	1128	8	-22	3	-1	-3	multi-exon	FALSE	canonical	3	54	junction_1	267.855352374968	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGCTGTCATGCCCCTGC	NA	False	NA	-6	True	AATAAA	-15	NA	19579926	19549128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_19549516_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
ENSMUSG00000003062.14_5	chr13	-	1407	10	FSM	ENSMUSG00000003062.14	ENSMUST00000197565.3	1391	10	-23	7	-2	-4	multi-exon	FALSE	canonical	3	23	junction_9	324.011659598163	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGATGATTGTGTGTTG	NA	False	NA	-7	True	AATAAA	-12	NA	19579927	19541852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19575142_19575268_19579873
ENSMUSG00000003068.18_1	chr10	+	2357	10	FSM	ENSMUSG00000003068.18	ENSMUST00000003152.14	2566	10	-4	213	-4	0	multi-exon	FALSE	canonical	3	36	junction_1	19.2898617266195	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGGCTATGAGGGTGT	2643	False	NA	19	True	AATAAA	-14	NA	79951632	79966303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79952742_79960635_79960720_79961312_79961403_79961866_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79965738_79965946_79966089
ENSMUSG00000003068.18_2	chr10	+	3682	11	FSM	ENSMUSG00000003068.18	ENSMUST00000144883.8	3663	11	-15	-4	-15	3	multi-exon	FALSE	canonical	2	4	junction_9	30.2019866896203	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTATGAGGGTGTTTGG	2632	False	NA	23	True	AATAAA	-18	NA	79951621	79966307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79952742_79960635_79960720_79961312_79961403_79961866_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79964224_79965535_79965738_79965946_79966089
ENSMUSG00000003068.18_25	chr10	+	1050	7	ISM	ENSMUSG00000003068.18	ENSMUST00000105370.8	1474	8	682	206	-329	0	3prime_fragment	FALSE	canonical	3	47	junction_1	15.7347810068438	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGGCTATGAGGGTGT	1701	False	NA	19	True	AATAAA	-14	NA	79961890	79966303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79965738_79965946_79966089
ENSMUSG00000003068.18_30	chr10	+	186	1	ISM	ENSMUSG00000003068.18	ENSMUST00000144883.8	3663	11	14478	3	3599	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGCTATGGCTATGAGGG	5925	False	NA	16	True	AATAAA	-11	NA	79966114	79966300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79966100_79966300
ENSMUSG00000003070.7_0	chr10	+	1972	4	FSM	ENSMUSG00000003070.7	ENSMUST00000003154.7	2131	4	157	2	157	-2	multi-exon	FALSE	canonical	3	63	junction_2	9.10433352249844	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCGTGGGCCTCTCTGTTA	NA	False	NA	14	True	AATAAA	-15	NA	80015472	80025842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80015725_80022585_80022900_80024275_80024342_80024502
ENSMUSG00000003070.7_3	chr10	+	1717	3	ISM	ENSMUSG00000003070.7	ENSMUST00000003154.7	2131	4	7271	4	7271	-4	3prime_fragment	FALSE	canonical	3	63	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGCGTGGGCCTCTCTGT	2931	False	NA	12	True	AATAAA	-13	NA	80022586	80025840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80022900_80024275_80024342_80024502
ENSMUSG00000003072.16_2	chr10	+	868	4	FSM	ENSMUSG00000003072.16	ENSMUST00000003156.15	931	4	54	9	-1	-3	multi-exon	FALSE	canonical	3	2420	junction_3	40.5983031938802	946	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTGAGTGTTCTGTTTC	4499	False	NA	11	True	ATTAAA	-10	NA	79978202	79981643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79978441_79979665_79979820_79981052_79981142_79981256
ENSMUSG00000003099.12_0	chr7	-	1967	13	FSM	ENSMUSG00000003099.12	ENSMUST00000003183.12	2072	13	88	17	-19	-17	multi-exon	FALSE	canonical	3	1050	junction_5	57.0079794609686	1396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACCTCATCTCAAACCC	NA	False	NA	-20	True	AATAAA	-20	NA	16761753	16738581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ENSMUSG00000003099.12_2	chr7	-	2247	12	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-19	-17	intron_retention	FALSE	canonical	3	1050	junction_5	58.5383959607102	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACCTCATCTCAAACCC	NA	False	NA	-20	True	AATAAA	-20	NA	16761753	16738581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ENSMUSG00000003119.15_0	chr11	+	5953	14	NNC	ENSMUSG00000003119.15	novel	5912	14	NA	NA	-241	-197	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	25.4502647595533	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTTCTCCGTAACTCT	NA	False	NA	68	True	AATAAA	-22	NA	98093643	98142193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_98095237_98101189_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140535
ENSMUSG00000003119.15_1	chr11	+	5976	14	FSM	ENSMUSG00000003119.15	ENSMUST00000107539.8	5912	14	-262	198	-262	-198	multi-exon	FALSE	canonical	3	54	junction_13	16.8635316059493	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGTTCTCCGTAACTC	NA	False	NA	67	True	AATAAA	-21	NA	98093622	98142192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98095237_98101186_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140535
ENSMUSG00000003119.15_11	chr11	+	4829	17	NIC	ENSMUSG00000003119.15	novel	5912	14	NA	NA	-263	-947	combination_of_known_splicesites	FALSE	canonical	1	1	junction_13	38.1262294883719	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAATCTCCAGGCCCCTA	NA	False	NA	NA	False	NA	NA	NA	98093621	98168383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_98095237_98101186_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98154295_98154397_98155019_98155134_98158577_98158685_98168196
ENSMUSG00000003119.15_19	chr11	+	4921	13	ISM	ENSMUSG00000003119.15	ENSMUST00000107539.8	5912	14	7574	-633	7298	633	3prime_fragment	FALSE	canonical	3	54	junction_12	14.0356688476182	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGCTACCAGTGTGAAT	NA	False	NA	NA	False	ATTAAA	-24	NA	98101458	98143023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140535
ENSMUSG00000003119.15_2	chr11	+	6000	14	FSM	ENSMUSG00000003119.15	ENSMUST00000107538.2	5143	14	-542	-315	-266	-205	multi-exon	FALSE	canonical	3	27	junction_13	22.2330315590945	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTACATTGTTCTCC	NA	False	NA	60	True	AATAAA	-14	NA	98093618	98142185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98095237_98101186_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140508
ENSMUSG00000003119.15_20	chr11	+	4092	13	ISM	ENSMUSG00000003119.15	ENSMUST00000107538.2	5143	14	7323	-322	7323	-198	3prime_fragment	FALSE	canonical	3	27	junction_12	20.9090291501064	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGTTCTCCGTAACTC	NA	False	NA	67	True	AATAAA	-21	NA	98101483	98142192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140508
ENSMUSG00000003119.15_3	chr11	+	6155	18	NIC	ENSMUSG00000003119.15	novel	5912	14	NA	NA	-262	-11	combination_of_known_junctions	FALSE	canonical	3	9	junction_14	36.4238790072902	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	98093622	98169319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_98095237_98101186_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140535_98140927_98154295_98154397_98155019_98155134_98158577_98158685_98168196
ENSMUSG00000003119.15_4	chr11	+	5270	13	FSM	ENSMUSG00000003119.15	ENSMUST00000003203.14	4837	13	-521	88	-266	-88	multi-exon	TRUE	canonical	3	57	junction_1	13.3111795119741	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTGCATCATAAGAAATT	NA	False	NA	NA	False	AATAAA	-27	NA	98093618	98137442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98095237_98101186_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042
ENSMUSG00000003123.16_0	chr7	-	2793	10	FSM	ENSMUSG00000003123.16	ENSMUST00000003207.11	3613	10	696	124	696	-6	multi-exon	FALSE	canonical	3	24	junction_6	4.8099690715363	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATAGGGAGTGTGTTT	NA	False	NA	-6	True	AATAAA	-21	NA	25095108	25079075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25079599_25079950_25080382_25082575_25082753_25082877_25083106_25083797_25084090_25084204_25084391_25084604_25084751_25084861_25084953_25087542_25088079_25094925
ENSMUSG00000003123.16_1	chr7	-	1655	5	ISM	ENSMUSG00000003123.16	ENSMUST00000206861.2	3171	9	4557	-11	259	-5	3prime_fragment	FALSE	canonical	3	29	junction_2	3.24037034920393	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAGGGAGTGTGTTTT	8517	False	NA	-5	True	AATAAA	-22	NA	25084092	25079074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_25079599_25079950_25080382_25082575_25082753_25082877_25083106_25083797
ENSMUSG00000003131.8_0	chr9	-	4192	6	FSM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	217	2464	1	-2464	multi-exon	FALSE	canonical	3	321	junction_5	34.2169548615887	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCAAACTTACTGATGTC	4129	False	NA	-11	True	TATAAA	-13	NA	45896132	45876620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896002
ENSMUSG00000003131.8_1	chr9	-	4157	6	FSM	ENSMUSG00000003131.8	ENSMUST00000214179.2	794	6	-4	-3359	-4	-2466	multi-exon	FALSE	canonical	3	18	junction_5	143.058869001541	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTGCAAACTTACTGATG	9707	False	NA	-13	True	TATAAA	-11	NA	45896696	45876622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896599
ENSMUSG00000003131.8_2	chr9	-	2288	1	ISM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	17446	2459	16732	-2459	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTACTGATGTCTGTTT	NA	False	NA	-6	True	TATAAA	-18	NA	45878903	45876615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_45876600_45878900
ENSMUSG00000003134.11_16	chr1	-	3049	15	ISM	ENSMUSG00000003134.11	ENSMUST00000192531.6	3434	19	84404	-433	-1626	4	3prime_fragment	TRUE	canonical	3	38	junction_12	8.18691090730085	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTTTAAAATGTCATTT	5737	False	NA	-2	True	AATAAA	-19	NA	39433338	39410943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_39411868_39412807_39412906_39413162_39413253_39415504_39415571_39415958_39416200_39418535_39418605_39419075_39419175_39419308_39419439_39420357_39420644_39424201_39424320_39425078_39425294_39428388_39428540_39430197_39430369_39431137_39431336_39433145
ENSMUSG00000003134.11_2	chr1	-	4063	20	FSM	ENSMUSG00000003134.11	ENSMUST00000054462.11	4451	20	13	375	13	0	multi-exon	FALSE	canonical	3	38	junction_12	7.9882184715386	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGACTTTTTTAAAATGTC	NA	False	NA	-6	True	AATAAA	-15	NA	39517823	39410947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_39411868_39412807_39412906_39413162_39413253_39415504_39415571_39415958_39416200_39418535_39418605_39419075_39419175_39419308_39419439_39420357_39420644_39424201_39424320_39425078_39425294_39428388_39428540_39430197_39430369_39431137_39431336_39433145_39433354_39441763_39442005_39444371_39444601_39445832_39445952_39465148_39465260_39517520
ENSMUSG00000003134.11_22	chr1	-	3556	19	FSM	ENSMUSG00000003134.11	ENSMUST00000193823.2	3512	19	-46	2	9	-2	multi-exon	FALSE	canonical	3	38	junction_11	8.13011472441188	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAACCACTGAACAGTGT	NA	False	NA	NA	False	CATAAA	-17	NA	39517827	39412398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_39412906_39413162_39413253_39415504_39415571_39415958_39416200_39418535_39418605_39419075_39419175_39419308_39419439_39420357_39420644_39424201_39424320_39425078_39425294_39428388_39428540_39430197_39430369_39431137_39431336_39433145_39433354_39441763_39442005_39444371_39444601_39445832_39445952_39465148_39465260_39517520
ENSMUSG00000003135.16_0	chr1	+	1668	7	FSM	ENSMUSG00000003135.16	ENSMUST00000003219.14	3162	7	0	1494	0	-22	multi-exon	FALSE	canonical	3	674	junction_2	52.6289421854131	792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAAATTTCCTTTTTC	NA	False	NA	5	True	TATAAA	-16	NA	39574882	39584460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_39575419_39576496_39576662_39577351_39577505_39578953_39579157_39581480_39581684_39583972_39584070_39584149
ENSMUSG00000003135.16_2	chr1	+	1504	6	NIC	ENSMUSG00000003135.16	novel	3162	7	NA	NA	-1	-22	intron_retention	FALSE	canonical	3	64	junction_1	290.336769975833	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAAATTTCCTTTTTC	NA	False	NA	5	True	TATAAA	-16	NA	39574881	39584460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_39575419_39577351_39577505_39578953_39579157_39581480_39581684_39583972_39584070_39584149
ENSMUSG00000003153.11_0	chr6	-	3714	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	227	18	4	-1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	21202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTCATGTCACAAGC	8917	False	NA	-22	True	AATAAA	-11	NA	122719477	122704785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
ENSMUSG00000003153.11_2	chr6	-	1639	1	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	13281	17	3712	0	mono-exon	FALSE	NA	NA	NA	NA	NA	655	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATGTCACAAGCT	NA	False	NA	-21	True	AATAAA	-12	NA	122706423	122704784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_122704800_122706400
ENSMUSG00000003154.16_0	chr6	+	5268	11	FSM	ENSMUSG00000003154.16	ENSMUST00000003238.14	5283	11	-10	25	-10	0	multi-exon	TRUE	canonical	3	21	junction_1	4.4	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAAGAAAAGAA	2567	False	NA	50	True	NA	NA	NA	122796862	122822300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_122797930_122805115_122805463_122808394_122808470_122809896_122809966_122810119_122810261_122810639_122810836_122814779_122815164_122815542_122815645_122816419_122816630_122817184_122817284_122819722
ENSMUSG00000003154.16_10	chr6	+	1306	1	ISM	ENSMUSG00000003154.16	ENSMUST00000003238.14	5283	11	24122	25	17361	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAAGAAAAGAA	204	False	NA	50	True	NA	NA	NA	122820994	122822300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_122821000_122822300
ENSMUSG00000003154.16_6	chr6	+	4237	11	NNC	ENSMUSG00000003154.16	novel	693	5	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	8.47584804016684	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAAGAAAAGAA	9306	False	NA	50	True	NA	NA	NA	122803601	122822300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_122803638_122805115_122805463_122808394_122808470_122809896_122809966_122810119_122810261_122810639_122810836_122814779_122815164_122815542_122815645_122816419_122816630_122817184_122817284_122819722
ENSMUSG00000003154.16_8	chr6	+	4086	10	ISM	ENSMUSG00000003154.16	ENSMUST00000177927.4	4620	12	7761	0	1597	0	3prime_fragment	FALSE	canonical	3	27	junction_5	3.32591767713239	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAAGAAAAGAA	NA	False	NA	50	True	NA	NA	NA	122805230	122822300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_122805463_122808394_122808470_122809896_122809966_122810119_122810261_122810639_122810836_122814779_122815164_122815542_122815645_122816419_122816630_122817184_122817284_122819722
ENSMUSG00000003161.16_0	chr5	+	921	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	33	1297	-2	128	multi-exon	FALSE	canonical	3	434	junction_5	36.6795277382635	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATATATTACATATTTTC	NA	False	NA	-1	True	TATAAA	-16	NA	8106559	8117854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
ENSMUSG00000003161.16_6	chr5	+	3279	3	FSM	ENSMUSG00000003161.16	ENSMUST00000144265.6	531	3	2	-2750	2	0	multi-exon	FALSE	canonical	3	504	junction_2	21	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8106563	8112471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_8106640_8107537_8107622_8109352
ENSMUSG00000003166.21_0	chr16	-	4016	10	FSM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	-22	9	11	-3	multi-exon	TRUE	canonical	3	236	junction_7	73.3575717518876	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAAAAGCATGGTCAGT	NA	False	NA	-11	True	AATAAA	-9	NA	17709546	17658227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
ENSMUSG00000003166.21_1	chr16	-	4027	10	FSM	ENSMUSG00000003166.21	ENSMUST00000012152.13	4045	10	9	9	9	-3	multi-exon	FALSE	non_canonical	0	0	junction_7	135.772503989233	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAAAAGCATGGTCAGT	NA	False	NA	-11	True	AATAAA	-9	NA	17709548	17658227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709249
ENSMUSG00000003166.21_3	chr16	-	1593	1	ISM	ENSMUSG00000003166.21	ENSMUST00000135229.8	5703	9	49699	881	3222	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAAAGCATGGTCAGTT	3640	False	NA	-10	True	AATAAA	-10	NA	17659819	17658226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_17658200_17659800
ENSMUSG00000003166.21_54	chr16	-	1420	7	ISM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	-27	9033	6	-77	5prime_fragment	FALSE	canonical	3	236	junction_4	83.6932228770977	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGCTGACTGTTTACA	NA	False	NA	-8	True	AATAAA	-11	NA	17709551	17667251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
ENSMUSG00000003184.16_0	chr7	+	1547	8	FSM	ENSMUSG00000003184.16	ENSMUST00000003284.16	2031	8	22	462	4	-3	multi-exon	FALSE	canonical	3	81	junction_5	29.0601066054199	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATCTGCTGTCGACTG	NA	False	NA	1	True	AATAAA	-16	NA	44647093	44651810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
ENSMUSG00000003184.16_13	chr7	+	1337	8	NIC	ENSMUSG00000003184.16	novel	2031	8	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	54.0181375435461	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATCTGCTGTCGACTGC	NA	False	NA	2	True	AATAAA	-17	NA	44647098	44651811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650241_44651096_44651213_44651587
ENSMUSG00000003184.16_2	chr7	+	2293	6	NIC	ENSMUSG00000003184.16	novel	1641	7	NA	NA	6	-3	intron_retention	FALSE	canonical	3	134	junction_1	18.4499322491981	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATCTGCTGTCGACTG	NA	False	NA	1	True	AATAAA	-16	NA	44647095	44651810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44651213_44651587
ENSMUSG00000003184.16_4	chr7	+	1643	7	FSM	ENSMUSG00000003184.16	ENSMUST00000207555.2	1641	7	-17	15	6	-3	multi-exon	FALSE	canonical	3	134	junction_1	17.7458915433028	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATCTGCTGTCGACTG	NA	False	NA	1	True	AATAAA	-16	NA	44647095	44651810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
ENSMUSG00000003184.16_6	chr7	+	1816	7	FSM	ENSMUSG00000003184.16	ENSMUST00000207476.2	1797	7	-23	4	9	-3	multi-exon	TRUE	canonical	3	15	junction_1	53.8196577056707	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATCTGCTGTCGACTG	NA	False	NA	1	True	AATAAA	-16	NA	44647080	44651810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44647491_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
ENSMUSG00000003190.13_0	chr7	-	966	6	NIC	ENSMUSG00000003190.13	novel	1075	7	NA	NA	-7	-7	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	59.7943141109587	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGAGCCCGAAAGTGTG	NA	False	NA	NA	False	ATTAAA	-14	NA	44646993	44640652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44640879_44642167_44642456_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ENSMUSG00000003190.13_11	chr7	-	763	6	NIC	ENSMUSG00000003190.13	novel	1075	7	NA	NA	0	-7	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	60.7730203297483	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGAGCCCGAAAGTGTG	NA	False	NA	NA	False	ATTAAA	-14	NA	44646986	44640652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44640879_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ENSMUSG00000003190.13_2	chr7	-	1060	7	FSM	ENSMUSG00000003190.13	ENSMUST00000003290.12	1075	7	8	7	8	-7	multi-exon	FALSE	canonical	3	119	junction_2	18.8473399243029	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGAGCCCGAAAGTGTG	NA	False	NA	NA	False	ATTAAA	-14	NA	44646995	44640652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44640879_44642167_44642456_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ENSMUSG00000003190.13_21	chr7	-	1408	7	ISM	ENSMUSG00000003190.13	ENSMUST00000208128.2	1596	8	1162	7	1	-7	3prime_fragment	FALSE	canonical	3	11	junction_2	55.4907399682345	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGAGCCCGAAAGTGTG	NA	False	NA	NA	False	ATTAAA	-14	NA	44646974	44640652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44640879_44642167_44642456_44643234_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ENSMUSG00000003190.13_7	chr7	-	693	5	NIC	ENSMUSG00000003190.13	novel	1596	8	NA	NA	-5	-7	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	66.4115953730973	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGAGCCCGAAAGTGTG	NA	False	NA	NA	False	ATTAAA	-14	NA	44647008	44640652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44640879_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ENSMUSG00000003198.11_0	chr17	+	2040	4	FSM	ENSMUSG00000003198.11	ENSMUST00000054780.10	2028	4	-16	4	11	-4	multi-exon	FALSE	canonical	3	9	junction_1	17.3781471969828	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAATTATATTTATGT	NA	False	NA	NA	False	AATAAA	-9	NA	56199103	56205924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56199187_56202820_56202948_56203140_56203202_56204155
ENSMUSG00000003198.11_1	chr17	+	2147	5	FSM	ENSMUSG00000003198.11	ENSMUST00000224379.2	895	5	11	-1263	11	0	multi-exon	FALSE	canonical	3	14	junction_1	13.1624465810882	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATATTTATGTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	56199103	56205928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56199187_56199757_56199861_56202820_56202948_56203140_56203202_56204155
ENSMUSG00000003198.11_3	chr17	+	2437	4	FSM	ENSMUSG00000003198.11	ENSMUST00000224294.2	705	4	-93	-1639	-93	-10	multi-exon	FALSE	canonical	3	33	junction_1	7.87400787401181	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGTGAATGAAAATTATAT	NA	False	NA	NA	False	AATAAA	-3	NA	56199374	56205918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56199861_56202820_56202948_56203140_56203202_56204155
ENSMUSG00000003198.11_4	chr17	+	2281	5	NNC	ENSMUSG00000003198.11	novel	705	4	NA	NA	-54	-2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	13.1624465810882	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATTATATTTATGTGT	NA	False	NA	NA	False	AATAAA	-11	NA	56199413	56205926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_56199633_56199757_56199861_56202820_56202948_56203140_56203202_56204155
ENSMUSG00000003198.11_5	chr17	+	5356	3	ISM	ENSMUSG00000003198.11	ENSMUST00000054780.10	2028	4	302	4	-46	-4	3prime_fragment	FALSE	canonical	3	36	junction_2	7.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAATTATATTTATGT	NA	False	NA	NA	False	AATAAA	-9	NA	56199421	56205924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_56202948_56203140_56203202_56204155
ENSMUSG00000003199.17_1	chr17	+	1556	13	FSM	ENSMUSG00000003199.17	ENSMUST00000149441.8	1701	13	16	129	9	8	multi-exon	FALSE	canonical	3	665	junction_1	98.0428973573416	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACAAGCCTGTGGCTGGG	NA	False	NA	17	True	AATAAA	-17	NA	56316216	56323661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56316257_56316329_56316587_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
ENSMUSG00000003199.17_14	chr17	+	1520	12	ISM	ENSMUSG00000003199.17	ENSMUST00000149441.8	1701	13	125	129	-7	8	3prime_fragment	FALSE	canonical	3	800	junction_1	72.3614663904886	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACAAGCCTGTGGCTGGG	NA	False	NA	17	True	AATAAA	-17	NA	56316325	56323661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_56316587_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
ENSMUSG00000003199.17_4	chr17	+	1628	12	NIC	ENSMUSG00000003199.17	novel	1701	13	NA	NA	9	8	intron_retention	FALSE	canonical	3	665	junction_1	102.378167868928	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACAAGCCTGTGGCTGGG	NA	False	NA	17	True	AATAAA	-17	NA	56316216	56323661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_56316257_56316329_56316587_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
ENSMUSG00000003200.11_0	chr17	-	2025	10	FSM	ENSMUSG00000003200.11	ENSMUST00000003268.11	2073	10	45	3	-14	-3	multi-exon	FALSE	canonical	3	585	junction_1	54.5914116159513	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCCACTGTCCCATCTTC	NA	False	NA	-4	True	ATTAAA	-14	NA	56343590	56323752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
ENSMUSG00000003200.11_2	chr17	-	2104	9	NIC	ENSMUSG00000003200.11	novel	2073	10	NA	NA	-14	-1	intron_retention	FALSE	canonical	3	585	junction_1	56.6192050014834	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACTGTCCCATCTTCAT	NA	False	NA	-2	True	ATTAAA	-16	NA	56343590	56323750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
ENSMUSG00000003208.10_0	chr17	+	1667	8	FSM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	-17	10	-15	-6	multi-exon	FALSE	canonical	3	126	junction_5	8.99205998963212	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCGGAAATGTTCGTGTT	327	False	NA	-2	True	NA	NA	NA	56266156	56275275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
ENSMUSG00000003226.8_1	chr10	+	10197	29	FSM	ENSMUSG00000003226.8	ENSMUST00000003310.7	9608	29	-49	-540	-47	540	multi-exon	TRUE	canonical	3	152	junction_18	69.5662490738439	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACAGCCATGACATTTAA	NA	False	NA	8	True	AATAAA	-11	NA	58282694	58330718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_58282874_58287805_58287874_58289133_58289246_58290394_58290548_58291040_58291272_58291630_58291777_58293413_58293607_58296339_58296428_58297657_58297868_58299640_58299823_58299904_58300081_58300226_58300351_58300886_58301049_58301265_58301404_58301484_58301632_58302936_58303117_58303211_58303296_58306448_58306585_58311065_58311161_58311978_58316642_58318850_58319022_58319718_58319806_58320263_58320443_58321501_58321704_58324394_58324497_58326431_58326578_58328232_58328507_58328623_58328959_58329484
ENSMUSG00000003226.8_26	chr10	+	4824	10	ISM	ENSMUSG00000003226.8	ENSMUST00000003310.7	9608	29	31804	-540	31531	540	3prime_fragment	FALSE	canonical	3	267	junction_1	37.0705033985543	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACAGCCATGACATTTAA	NA	False	NA	8	True	AATAAA	-11	NA	58314547	58330718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_58316642_58318850_58319022_58319718_58319806_58320263_58320443_58321501_58321704_58324394_58324497_58326431_58326578_58328232_58328507_58328623_58328959_58329484
ENSMUSG00000003226.8_39	chr10	+	941	1	Genic_Genomic	ENSMUSG00000003226.8	novel	NA	NA	NA	NA	46763	542	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGCCATGACATTTAAAA	1072	False	NA	10	True	AATAAA	-13	NA	58329779	58330720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_+_58329800_58330700
ENSMUSG00000003228.10_0	chr19	+	5966	16	FSM	ENSMUSG00000003228.10	ENSMUST00000003313.10	6580	16	607	7	-39	-7	multi-exon	FALSE	canonical	0	0	junction_1	1.76886655485621	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATAACATTGCAATTTCC	NA	False	NA	NA	False	AATAAA	-11	NA	60878793	61084399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_60879070_60976139_60976236_61020189_61020303_61034514_61034593_61056985_61057087_61057741_61057835_61060871_61060936_61061826_61061968_61065075_61065267_61067774_61067813_61069291_61069382_61071498_61071708_61074509_61074648_61078348_61078487_61078945_61079078_61080331
ENSMUSG00000003233.13_2	chr16	+	4801	15	FSM	ENSMUSG00000003233.13	ENSMUST00000003318.13	2519	15	49	-2331	-33	-8	multi-exon	FALSE	canonical	3	157	junction_5	17.2123591097342	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTATTATTATTATTATTA	NA	False	NA	7	True	NA	NA	NA	20335780	20352752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20336106_20341005_20341076_20342159_20342282_20342401_20342512_20342689_20342826_20343001_20343096_20343268_20343339_20344388_20344529_20344655_20344733_20344838_20344907_20345016_20345167_20345698_20345831_20346001_20346170_20349526_20349743_20349829
ENSMUSG00000003233.13_3	chr16	+	4738	16	NNC	ENSMUSG00000003233.13	novel	3983	16	NA	NA	41	-7	intron_retention	FALSE	non_canonical	0	0	junction_15	49.0181825675149	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATTATTATTATTATTAT	NA	False	NA	8	True	NA	NA	NA	20335772	20352753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_20336106_20341005_20341076_20342159_20342282_20342401_20342512_20342689_20342826_20343001_20343096_20343268_20343339_20344388_20344529_20344655_20344733_20344838_20344907_20345016_20345167_20345698_20345831_20346001_20346170_20349526_20349743_20349829_20351306_20351377
ENSMUSG00000003233.13_8	chr16	+	4716	16	NNC	ENSMUSG00000003233.13	novel	3983	16	NA	NA	-16	-4	intron_retention	TRUE	non_canonical	0	0	junction_15	49.0181825675149	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATTATTATTATTATTAT	NA	False	NA	11	True	NA	NA	NA	20335797	20352756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_20336106_20341005_20341076_20342159_20342282_20342401_20342512_20342689_20342826_20343001_20343096_20343268_20343339_20344388_20344529_20344655_20344733_20344838_20344907_20345016_20345167_20345698_20345831_20346001_20346170_20349526_20349743_20349829_20351349_20351420
ENSMUSG00000003233.13_81	chr16	+	1710	1	ISM	ENSMUSG00000003233.13	ENSMUST00000171572.9	3983	16	15233	4	15111	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATTATTATTATTATTAT	NA	False	NA	11	True	NA	NA	NA	20351046	20352756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_20351000_20352800
ENSMUSG00000003234.17_0	chr16	+	2445	21	FSM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	83	562	-16	-1	multi-exon	TRUE	canonical	3	293	junction_13	17.6705970470723	469	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTTTTGCCTCTCTGCT	NA	False	NA	3	True	ATTAAA	-12	NA	20367409	20379567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
ENSMUSG00000003235.14_1	chr16	+	2479	16	FSM	ENSMUSG00000003235.14	ENSMUST00000003320.14	2554	16	75	0	75	0	multi-exon	TRUE	canonical	3	2657	junction_7	154.998007155648	5020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20317641	20328073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
ENSMUSG00000003269.18_1	chr7	-	1532	12	FSM	ENSMUSG00000003269.18	ENSMUST00000107729.10	2519	12	27	960	-2	12	multi-exon	FALSE	canonical	3	144	junction_4	92.1110540651432	337	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCTTGCGCCTGCAGAT	3189	False	NA	NA	False	NA	NA	NA	45463708	45457020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459550_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
ENSMUSG00000003271.18_1	chr7	-	1159	7	NNC	ENSMUSG00000003271.18	novel	1193	7	NA	NA	-7141	-5	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	2.80871659105879	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCACTCCCTCCTCTGTGC	7695	False	NA	NA	False	AATAAA	-12	NA	45399311	45379411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_45379624_45380661_45380843_45383042_45383138_45383410_45383538_45384558_45384768_45391477_45391621_45399119
ENSMUSG00000003273.15_0	chr7	+	1671	5	NIC	ENSMUSG00000003273.15	novel	1585	9	NA	NA	-7	0	intron_retention	FALSE	canonical	3	16	junction_2	4.14578098794425	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45350659	45354033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45350791_45351857_45352044_45352256_45352559_45352882_45353038_45353136
ENSMUSG00000003273.15_1	chr7	+	1166	7	ISM	ENSMUSG00000003273.15	ENSMUST00000003360.10	1585	9	1155	73	-18	0	3prime_fragment	FALSE	canonical	3	16	junction_2	3.86221007541882	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45350421	45354033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45350791_45351857_45352044_45352256_45352353_45352485_45352559_45352882_45353038_45353136_45353303_45353912
ENSMUSG00000003273.15_2	chr7	+	1300	6	NIC	ENSMUSG00000003273.15	novel	1585	9	NA	NA	-19	0	intron_retention	FALSE	canonical	3	16	junction_2	4.16653333119993	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45350420	45354033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45350791_45351857_45352044_45352256_45352559_45352882_45353038_45353136_45353303_45353912
ENSMUSG00000003273.15_5	chr7	+	1282	3	NIC	ENSMUSG00000003273.15	novel	1585	9	NA	NA	-578	0	intron_retention	FALSE	canonical	3	20	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45352328	45354033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45352559_45352882_45353038_45353136
ENSMUSG00000003279.18_1	chr17	+	2406	6	ISM	ENSMUSG00000003279.18	ENSMUST00000133717.9	2445	11	239121	-856	-47896	0	3prime_fragment	FALSE	canonical	2	6	junction_2	1.62480768092719	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGACACGCTGCCTCATT	4066	False	NA	NA	False	AATAAA	-20	NA	71068170	71126396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_71068441_71072992_71073085_71093782_71094205_71116182_71116275_71122188_71122342_71125019
ENSMUSG00000003279.18_2	chr17	+	1947	5	ISM	ENSMUSG00000003279.18	ENSMUST00000097288.4	2861	10	199454	-1	-48066	1	3prime_fragment	FALSE	canonical	2	6	junction_2	1.78535710713571	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAATAATAATTTCCTAT	3896	False	NA	NA	False	AATAAA	-20	NA	71068000	71123089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_71068441_71072992_71073085_71093782_71094205_71116182_71116275_71122188
ENSMUSG00000003282.10_0	chr4	-	4894	1	Genic_Genomic	ENSMUSG00000003282.10	novel	NA	NA	NA	NA	34706	2213	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTGTGTGTAACCTCTG	NA	False	NA	NA	False	TATAAA	-16	NA	3903676	3898782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_-_3898800_3903700
ENSMUSG00000003282.10_6	chr4	-	4295	5	NIC	ENSMUSG00000003282.10	novel	4774	6	NA	NA	1	-409	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	1.11803398874989	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGGAATGGCGCCATAT	NA	False	NA	NA	False	AATAAA	-9	NA	3938404	3901404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_3904948_3905446_3905806_3908905_3909003_3915620_3915726_3938213
ENSMUSG00000003283.16_1	chr2	+	2141	13	NNC	ENSMUSG00000003283.16	novel	2090	13	NA	NA	-797	-13	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	20.5877188310572	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCTTTCCCCAAGGGTC	NA	False	NA	4	True	AATAAA	-14	NA	152949590	152993346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_152949942_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
ENSMUSG00000003283.16_10	chr2	+	4316	6	NIC	ENSMUSG00000003283.16	novel	2090	13	NA	NA	23010	-19	intron_retention	FALSE	canonical	3	76	junction_2	5.67802782663136	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCAAAGGCTTTCCCCA	5454	False	NA	-2	True	AATAAA	-8	NA	152973397	152993340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
ENSMUSG00000003283.16_2	chr2	+	2042	13	FSM	ENSMUSG00000003283.16	ENSMUST00000189688.2	2090	13	35	13	35	-13	multi-exon	FALSE	canonical	3	76	junction_9	8.17346655682615	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCTTTCCCCAAGGGTC	NA	False	NA	4	True	AATAAA	-14	NA	152950422	152993346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152950675_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
ENSMUSG00000003299.11_0	chr9	+	1108	9	FSM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	168	12	-9	-4	multi-exon	FALSE	canonical	3	832	junction_5	79.3851371479574	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACTTGAAAATGAGCTGG	NA	False	NA	14	True	AATAAA	-14	NA	20914201	20920123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
ENSMUSG00000003299.11_1	chr9	+	1190	8	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	-9	-4	intron_retention	FALSE	canonical	3	832	junction_5	84.7158515875517	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACTTGAAAATGAGCTGG	NA	False	NA	14	True	AATAAA	-14	NA	20914201	20920123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919196_20919789
ENSMUSG00000003308.16_0	chr9	-	2909	6	FSM	ENSMUSG00000003308.16	ENSMUST00000049567.10	3172	6	252	11	-6	-11	multi-exon	FALSE	canonical	3	60	junction_5	30.9993548319961	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGACATTGGGTGTGGCT	NA	False	NA	-11	True	AATAAA	-6	NA	21150115	21141037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150088
ENSMUSG00000003308.16_2	chr9	-	3615	5	FSM	ENSMUSG00000003308.16	ENSMUST00000164812.8	3614	5	-3	2	-3	-2	multi-exon	FALSE	canonical	3	121	junction_3	9.14808723176599	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACCCGTCTATTGTCTC	NA	False	NA	-11	True	AATACA	-26	NA	21150112	21141364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366
ENSMUSG00000003308.16_3	chr9	-	1748	4	ISM	ENSMUSG00000003308.16	ENSMUST00000049567.10	3172	6	5451	6	3573	-6	3prime_fragment	FALSE	canonical	3	121	junction_3	10.4029910228848	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGGGTGTGGCTCTGAA	5020	False	NA	-6	True	AATAAA	-11	NA	21144916	21141032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683
ENSMUSG00000003308.16_4	chr9	-	2725	6	FSM	ENSMUSG00000003308.16	ENSMUST00000194542.6	3151	6	89	337	89	0	multi-exon	FALSE	canonical	3	33	junction_5	41.5143348736313	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCCGTCTATTGTCTCTG	NA	False	NA	-9	True	AATACA	-28	NA	21150539	21141362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150371
ENSMUSG00000003308.16_5	chr9	-	2722	6	FSM	ENSMUSG00000003308.16	ENSMUST00000193982.2	2163	6	7	-566	-1	0	multi-exon	FALSE	canonical	3	10	junction_5	50.5663920010119	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCCGTCTATTGTCTCTG	NA	False	NA	-9	True	AATACA	-28	NA	21150368	21141362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150203
ENSMUSG00000003309.15_0	chr9	-	1713	11	FSM	ENSMUSG00000003309.15	ENSMUST00000003397.9	1706	11	-10	3	-5	-3	multi-exon	FALSE	canonical	3	12	junction_6	5.23545604508337	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCTGTGAGTGTGCTTC	1335	False	NA	-7	True	ATTAAA	-9	NA	21223617	21206759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21207151_21207728_21207805_21209495_21209622_21210574_21210734_21213751_21213824_21213918_21214062_21216577_21216705_21216788_21217068_21220662_21220731_21220931_21221089_21223502
ENSMUSG00000003309.15_1	chr9	-	1908	6	ISM	ENSMUSG00000003309.15	ENSMUST00000003397.9	1706	11	8609	-1	-715	1	3prime_fragment	FALSE	canonical	3	14	junction_5	5.85149553533112	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGAGTGTGCTTCTTGG	9954	False	NA	-3	True	ATTAAA	-13	NA	21214998	21206755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21207151_21207728_21207805_21209495_21209622_21210574_21210734_21213751_21213824_21213918
ENSMUSG00000003309.15_2	chr9	-	1708	11	FSM	ENSMUSG00000003309.15	ENSMUST00000115433.11	2586	11	27	851	1	-3	multi-exon	FALSE	canonical	2	2	junction_6	7.33552997403732	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCTGTGAGTGTGCTTC	1346	False	NA	-7	True	ATTAAA	-9	NA	21223606	21206759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21207151_21207728_21207805_21209495_21209622_21210574_21210734_21213751_21213824_21213918_21214068_21216577_21216705_21216788_21217068_21220662_21220731_21220931_21221089_21223502
ENSMUSG00000003316.15_0	chr8	-	8115	26	FSM	ENSMUSG00000003316.15	ENSMUST00000169020.8	7021	26	7	-1101	7	1101	multi-exon	TRUE	canonical	3	407	junction_22	36.1425178978997	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGTTTGTATTTGTCGAA	6435	False	NA	-21	True	AATAAA	-7	NA	111985841	111879951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_111884694_111886430_111886538_111887252_111887374_111888057_111888166_111888998_111889101_111889269_111889413_111890402_111890527_111892188_111892327_111895292_111895386_111896119_111896238_111897861_111897951_111899046_111899161_111899833_111899897_111900865_111900953_111904276_111904415_111905464_111905619_111907566_111907669_111909162_111909285_111914345_111914561_111915298_111915483_111917821_111917894_111919155_111919360_111924224_111924441_111926767_111926855_111928157_111928191_111985402
ENSMUSG00000003316.15_2	chr8	-	3155	1	Genic_Genomic	ENSMUSG00000003316.15	novel	NA	NA	NA	NA	21309	1108	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTCGAATATTCTC	NA	False	NA	-14	True	AATAAA	-14	NA	111883099	111879944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_111879900_111883100
ENSMUSG00000003341.10_5	chr10	-	2060	8	NIC	ENSMUSG00000003341.10	novel	4412	28	NA	NA	12774	-8	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	2.71052370871575	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTCACTCCTTCTCCAA	NA	False	NA	NA	False	AATAAA	-30	NA	80362150	80355425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80356297_80357603_80357732_80357844_80357984_80360162_80360247_80361011_80361236_80361321_80361689_80361817_80361918_80362003
ENSMUSG00000003344.15_0	chr10	-	2439	9	FSM	ENSMUSG00000003344.15	ENSMUST00000126980.8	2449	9	2	8	2	-2	multi-exon	TRUE	canonical	3	325	junction_4	58.371118714652	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATCGAGTGCTATGTTG	NA	False	NA	-7	True	AATAAA	-18	NA	80492326	80478458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80479526_80479659_80479807_80480095_80480184_80480436_80480630_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
ENSMUSG00000003344.15_2	chr10	-	2457	9	NIC	ENSMUSG00000003344.15	novel	2449	9	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	105	junction_4	127.904994038544	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATCGAGTGCTATGTTG	NA	False	NA	-7	True	AATAAA	-18	NA	80492326	80478458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80479526_80479659_80479807_80480095_80480184_80480436_80480648_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
ENSMUSG00000003345.17_0	chr10	+	2358	12	NIC	ENSMUSG00000003345.17	novel	2348	11	NA	NA	-119	-28	combination_of_known_junctions	FALSE	canonical	3	537	junction_4	57.9097331204578	862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAAAGAAAA	NA	False	NA	-19	True	GGGGCT	-8	NA	80458552	80476547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80458785_80470047_80470476_80473721_80473763_80473843_80473914_80473994_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918_80475068_80475413_80475498_80475601_80475709_80475855
ENSMUSG00000003345.17_1	chr10	+	2439	11	FSM	ENSMUSG00000003345.17	ENSMUST00000079773.14	2348	11	-119	28	-119	-28	multi-exon	FALSE	canonical	3	651	junction_8	40.2685981876698	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAAAGAAAA	NA	False	NA	-19	True	GGGGCT	-8	NA	80458552	80476547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80458785_80470047_80470476_80473721_80473763_80473843_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918_80475068_80475413_80475498_80475601_80475709_80475855
ENSMUSG00000003346.15_0	chr10	-	1426	5	FSM	ENSMUSG00000003346.15	ENSMUST00000003436.12	1468	5	41	1	15	0	multi-exon	TRUE	canonical	3	337	junction_4	42.7631558704453	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGTTGCTTGGCTCCTTTG	7839	False	NA	-6	True	ATTAAA	-14	NA	80426134	80419488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80419898_80419976_80420157_80421441_80421637_80422348_80422865_80426008
ENSMUSG00000003346.15_4	chr10	-	4562	4	ISM	ENSMUSG00000003346.15	ENSMUST00000003436.12	1468	5	48	2	22	0	intron_retention	FALSE	canonical	3	372	junction_3	33.2565782966318	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGGTTGCTTGGCTCCTTT	7846	False	NA	-7	True	ATTAAA	-13	NA	80426127	80419489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80419898_80419976_80420157_80421441_80421637_80422348
ENSMUSG00000003346.15_5	chr10	-	1231	4	NIC	ENSMUSG00000003346.15	novel	1468	5	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	3	42	junction_2	157.557044343381	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGTTGCTTGGCTCCTTTG	7839	False	NA	-6	True	ATTAAA	-14	NA	80426134	80419488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80419898_80419976_80420157_80422348_80422865_80426008
ENSMUSG00000003348.11_0	chr10	-	1386	1	ISM	ENSMUSG00000003348.11	ENSMUST00000003438.11	2682	4	15214	3	7095	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGCGGGCTGCTCCTTG	NA	False	NA	-4	True	AATAAA	-13	NA	80522475	80521089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80521100_80522500
ENSMUSG00000003348.11_1	chr10	-	2657	4	FSM	ENSMUSG00000003348.11	ENSMUST00000003438.11	2682	4	22	3	-5	-3	multi-exon	FALSE	canonical	3	56	junction_3	9.97775303139718	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGCGGGCTGCTCCTTG	9139	False	NA	-4	True	AATAAA	-13	NA	80537667	80521089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80523008_80525685_80525889_80526902_80527402_80537630
ENSMUSG00000003348.11_3	chr10	-	2613	3	ISM	ENSMUSG00000003348.11	ENSMUST00000003438.11	2682	4	10295	3	2176	-3	3prime_fragment	FALSE	canonical	3	64	junction_1	8	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGCGGGCTGCTCCTTG	NA	False	NA	-4	True	AATAAA	-13	NA	80527394	80521089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80523008_80525685_80525889_80526902
ENSMUSG00000003352.15_0	chr15	+	2503	13	FSM	ENSMUSG00000003352.15	ENSMUST00000109150.9	2513	13	6	4	1	-4	multi-exon	FALSE	canonical	3	18	junction_1	9.06879570591132	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCCTCCGGTGTCTCTGG	NA	False	NA	1	True	AATAAA	-12	NA	98530262	98542406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_98530402_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98538839_98538860_98539057_98539139_98539280_98539340_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
ENSMUSG00000003352.15_10	chr15	+	2791	13	FSM	ENSMUSG00000003352.15	ENSMUST00000230490.2	2477	13	-314	0	24	0	multi-exon	FALSE	canonical	3	16	junction_1	9.50548087508816	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTGTCTCTGGTCTG	68	False	NA	5	True	AATAAA	-16	NA	98532671	98542410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_98533095_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98538839_98538860_98539057_98539139_98539280_98539340_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
ENSMUSG00000003352.15_25	chr15	+	1021	1	ISM	ENSMUSG00000003352.15	ENSMUST00000109150.9	2513	13	11133	0	4020	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTGTCTCTGGTCTG	3	False	NA	5	True	AATAAA	-16	NA	98541389	98542410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98541400_98542400
ENSMUSG00000003352.15_31	chr15	+	2502	12	NIC	ENSMUSG00000003352.15	novel	2513	13	NA	NA	-15	-6	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	13.5109383295704	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCCCTCCGGTGTCTCT	NA	False	NA	-1	True	AATAAA	-10	NA	98530241	98542404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_98530402_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98539057_98539139_98539280_98539340_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
ENSMUSG00000003352.15_46	chr15	+	2199	11	ISM	ENSMUSG00000003352.15	ENSMUST00000230490.2	2477	13	4755	0	371	0	3prime_fragment	FALSE	canonical	3	36	junction_3	6.21610810716802	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTGTCTCTGGTCTG	3222	False	NA	5	True	AATAAA	-16	NA	98537740	98542410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98537818_98538219_98538336_98538566_98538632_98538839_98538860_98539057_98539139_98539280_98539340_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
ENSMUSG00000003355.8_0	chr15	-	694	6	FSM	ENSMUSG00000003355.8	ENSMUST00000003445.8	734	6	37	3	-9	-3	multi-exon	FALSE	canonical	3	632	junction_4	33.5177564881661	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGACGTTGTATTTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	98626042	98622253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091_98625180_98625563_98625630_98625837
ENSMUSG00000003355.8_1	chr15	-	719	4	ISM	ENSMUSG00000003355.8	ENSMUST00000003445.8	734	6	604	3	546	-3	3prime_fragment	FALSE	canonical	3	637	junction_3	34.4512538072113	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGACGTTGTATTTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	98625475	98622253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091
ENSMUSG00000003360.16_0	chr15	-	3204	17	FSM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	-14	-3	-9	3	multi-exon	FALSE	canonical	3	15	junction_5	5.44252641243017	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	6985	False	NA	-11	True	AATAAA	-18	NA	98560784	98543011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
ENSMUSG00000003360.16_4	chr15	-	3216	17	NIC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	11	3	combination_of_known_junctions	FALSE	canonical	2	2	junction_16	8.39270516579726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	7018	False	NA	-11	True	AATAAA	-18	NA	98560751	98543011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560658
ENSMUSG00000003360.16_5	chr15	-	3613	16	NIC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-9	-4	intron_retention	FALSE	canonical	3	15	junction_5	5.25948877955094	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGTCAGCCCCGAG	6985	False	NA	-18	True	AATAAA	-11	NA	98560784	98543018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
ENSMUSG00000003360.16_9	chr15	-	1933	8	ISM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	12254	-3	12223	3	3prime_fragment	FALSE	canonical	3	15	junction_5	5.03862631101383	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	NA	False	NA	-11	True	AATAAA	-18	NA	98548516	98543011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473
ENSMUSG00000003363.16_0	chr7	-	2118	14	NIC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	-23	-14	combination_of_known_junctions	FALSE	canonical	3	19	junction_13	126.954541554455	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGCTTAACTGAGTGGTA	NA	False	NA	-13	True	AGTAAA	-17	NA	27252464	27231438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244711_27252422
ENSMUSG00000003363.16_1	chr7	-	2092	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	173	17	-23	-17	multi-exon	FALSE	canonical	3	277	junction_13	66.1410542194063	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGCTTAACTGAGTG	NA	False	NA	-16	True	AGTAAA	-14	NA	27252464	27231441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
ENSMUSG00000003363.16_2	chr7	-	1855	12	ISM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	10428	17	-39	-17	3prime_fragment	FALSE	canonical	3	435	junction_11	36.0309784069025	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGCTTAACTGAGTG	NA	False	NA	-16	True	AGTAAA	-14	NA	27242209	27231441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168
ENSMUSG00000003363.16_5	chr7	-	2017	13	NIC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	-23	-17	combination_of_known_junctions	FALSE	canonical	3	22	junction_12	130.304211367093	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGCTTAACTGAGTG	NA	False	NA	-16	True	AGTAAA	-14	NA	27252464	27231441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27252422
ENSMUSG00000003378.10_1	chr7	-	3778	20	FSM	ENSMUSG00000003378.10	ENSMUST00000003468.10	3763	20	-42	27	12	-27	multi-exon	FALSE	canonical	1	1	junction_16	1.63751044064253	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAGAACAAAAC	9157	False	NA	-33	True	NA	NA	NA	24771759	24709300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24710220_24713010_24713133_24713214_24713344_24714729_24714956_24715232_24715399_24721865_24722040_24722410_24722521_24722707_24722822_24745598_24745803_24757708_24757817_24757918_24758024_24758365_24758519_24759894_24760057_24760154_24760209_24762302_24762482_24764553_24764720_24764797_24764896_24767434_24767600_24767868_24767998_24771464
ENSMUSG00000003380.12_0	chr7	-	784	5	FSM	ENSMUSG00000003380.12	ENSMUST00000076961.9	899	5	107	8	-9	1	multi-exon	FALSE	canonical	3	706	junction_2	24.5051015096857	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGCCAATACTTTCCTG	0	True	NA	-13	True	AATAAA	-16	NA	24672072	24669184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526_24671740_24671951
ENSMUSG00000003382.19_0	chr3	+	5103	5	FSM	ENSMUSG00000003382.19	ENSMUST00000119109.8	5309	5	192	14	-8	0	multi-exon	FALSE	canonical	3	12	junction_1	13.4605906259718	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAGAGTACTTAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	87432905	87447449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87432967_87434567_87434624_87435176_87435415_87436530_87436647_87442817
ENSMUSG00000003382.19_1	chr3	+	5110	5	FSM	ENSMUSG00000003382.19	ENSMUST00000170036.8	5127	5	17	0	-12	0	multi-exon	FALSE	canonical	3	20	junction_1	10.2072278312968	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAGAGTACTTAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	87432901	87447449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87432967_87434564_87434624_87435176_87435415_87436530_87436647_87442817
ENSMUSG00000003382.19_10	chr3	+	6807	3	FSM	ENSMUSG00000003382.19	ENSMUST00000136680.2	7263	3	442	14	431	0	multi-exon	FALSE	canonical	3	40	junction_1	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAGAGTACTTAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	87433355	87447449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87435415_87436530_87436647_87442817
ENSMUSG00000003382.19_11	chr3	+	5047	4	ISM	ENSMUSG00000003382.19	ENSMUST00000170036.8	5127	5	1678	0	1638	0	3prime_fragment	FALSE	canonical	3	37	junction_1	4.64279609239471	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAGAGTACTTAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	87434562	87447449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_87434624_87435176_87435415_87436530_87436647_87442817
ENSMUSG00000003382.19_13	chr3	+	3269	1	ISM	ENSMUSG00000003382.19	ENSMUST00000119109.8	5309	5	11467	14	11256	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAGAGTACTTAAA	8356	False	NA	NA	False	ATTAAA	-10	NA	87444180	87447449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_87444200_87447400
ENSMUSG00000003382.19_16	chr3	+	4709	2	ISM	ENSMUSG00000003382.19	ENSMUST00000136680.2	7263	3	3656	14	3645	0	3prime_fragment	FALSE	canonical	3	48	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAGAGTACTTAAA	745	False	NA	NA	False	ATTAAA	-10	NA	87436569	87447449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_87436647_87442817
ENSMUSG00000003402.15_2	chr9	+	2008	18	FSM	ENSMUSG00000003402.15	ENSMUST00000003493.9	2012	18	1	3	1	-1	multi-exon	TRUE	canonical	3	461	junction_11	125.012497645132	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTGTGGCTGTTTTTT	NA	False	NA	17	True	AATAAA	-13	NA	21914314	21925515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ENSMUSG00000003402.15_3	chr9	+	2033	18	NIC	ENSMUSG00000003402.15	novel	2228	18	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	150	junction_1	210.71322284977	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTGTGGCTGTTTTTT	NA	False	NA	17	True	AATAAA	-13	NA	21914314	21925515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21914389_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ENSMUSG00000003402.15_7	chr9	+	2012	18	FSM	ENSMUSG00000003402.15	ENSMUST00000216344.2	2228	18	213	3	1	-1	multi-exon	FALSE	canonical	3	150	junction_1	191.361611709314	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTGTGGCTGTTTTTT	NA	False	NA	17	True	AATAAA	-13	NA	21914314	21925515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21914389_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ENSMUSG00000003402.15_9	chr9	+	2029	18	FSM	ENSMUSG00000003402.15	ENSMUST00000115331.10	1983	18	-47	1	1	-1	multi-exon	FALSE	canonical	3	290	junction_11	154.653737577573	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTGTGGCTGTTTTTT	NA	False	NA	17	True	AATAAA	-13	NA	21914314	21925515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ENSMUSG00000003410.9_1	chr9	-	1988	1	ISM	ENSMUSG00000003410.9	ENSMUST00000003501.9	5014	7	35016	2	9380	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTCAGGTGCTCTGTGT	NA	False	NA	-2	True	AATAAA	-15	NA	21928290	21926302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21926300_21928300
ENSMUSG00000003411.11_0	chr4	+	1136	5	FSM	ENSMUSG00000003411.11	ENSMUST00000106650.9	3327	5	49	2142	49	-3	multi-exon	FALSE	canonical	3	36	junction_4	5.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTACAACCTGCTTGTTT	NA	False	NA	1	True	ATTAAA	-12	NA	108736308	108798379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_108736416_108747504_108747733_108781102_108781222_108786598_108786724_108797822
ENSMUSG00000003411.11_2	chr4	+	210	1	ISM	ENSMUSG00000003411.11	ENSMUST00000106650.9	3327	5	61915	2137	1878	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACCTGCTTGTTTCCTAT	NA	False	NA	6	True	ATTAAA	-17	NA	108798174	108798384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_108798200_108798400
ENSMUSG00000003418.12_0	chr2	-	3387	8	FSM	ENSMUSG00000003418.12	ENSMUST00000003509.10	7618	8	217	4014	217	2119	multi-exon	FALSE	canonical	3	67	junction_4	4.91146098219174	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATAGAGGCTCTTTTAT	NA	False	NA	NA	False	AATAAA	-24	NA	13798658	13659845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_13662102_13670230_13670324_13673595_13673709_13677293_13677439_13701638_13701726_13728253_13728344_13797564_13797664_13798154
ENSMUSG00000003418.12_1	chr2	-	4484	1	ISM	ENSMUSG00000003418.12	ENSMUST00000003509.10	7618	8	138556	4	137785	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGACACATCGTTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	13660319	13655835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_13655800_13660300
ENSMUSG00000003418.12_6	chr2	-	3303	7	NIC	ENSMUSG00000003418.12	novel	7618	8	NA	NA	209	2117	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	28.0975483311662	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGAATAGAGGCTCTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	13798666	13659847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_13662102_13670230_13670324_13673595_13673709_13677293_13677439_13701638_13701726_13797564_13797664_13798154
ENSMUSG00000003420.9_1	chr7	-	1617	7	FSM	ENSMUSG00000003420.9	ENSMUST00000003512.9	1770	7	79	74	-17	0	multi-exon	FALSE	canonical	3	66	junction_3	11.6583303550151	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	844	False	NA	-7	True	CATAAA	-10	NA	44753196	44742487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063
ENSMUSG00000003420.9_10	chr7	-	1730	8	NNC	ENSMUSG00000003420.9	novel	1770	7	NA	NA	-2630	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_7	26.6075023945027	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	NA	False	NA	-7	True	CATAAA	-10	NA	44755905	44742487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063_44753185_44755780
ENSMUSG00000003420.9_12	chr7	-	1277	6	ISM	ENSMUSG00000003420.9	ENSMUST00000003512.9	1770	7	785	74	20	0	3prime_fragment	FALSE	canonical	3	66	junction_3	9.88736567544662	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	1550	False	NA	-7	True	CATAAA	-10	NA	44752490	44742487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426
ENSMUSG00000003420.9_17	chr7	-	530	2	FSM	ENSMUSG00000003420.9	ENSMUST00000211535.2	595	2	67	-2	16	2	multi-exon	FALSE	canonical	3	98	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGTCTCTGTGTCCGTCT	888	False	NA	NA	False	AATACA	-15	NA	44753152	44752256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44752698_44753063
ENSMUSG00000003420.9_18	chr7	-	779	4	ISM	ENSMUSG00000003420.9	ENSMUST00000210642.2	1602	7	1736	0	1077	0	3prime_fragment	FALSE	canonical	3	66	junction_3	11.5854314646552	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	2607	False	NA	-7	True	CATAAA	-10	NA	44751433	44742487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333
ENSMUSG00000003420.9_23	chr7	-	533	1	NIC	ENSMUSG00000003420.9	novel	1770	7	NA	NA	9490	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	5285	False	NA	-7	True	CATAAA	-10	NA	44743020	44742487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44742500_44743000
ENSMUSG00000003420.9_4	chr7	-	1637	7	FSM	ENSMUSG00000003420.9	ENSMUST00000210642.2	1602	7	-35	0	15	0	multi-exon	FALSE	canonical	3	14	junction_4	28.0475786239502	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	836	False	NA	-7	True	CATAAA	-10	NA	44753204	44742487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751825_44752096_44752426_44752698_44753063
ENSMUSG00000003420.9_7	chr7	-	1794	8	NNC	ENSMUSG00000003420.9	novel	1770	7	NA	NA	-2690	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	25.6515106767613	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	NA	False	NA	-7	True	CATAAA	-10	NA	44755965	44742487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063_44753189_44755780
ENSMUSG00000003421.14_0	chr7	+	1753	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	37	24	-3	-24	multi-exon	FALSE	canonical	3	417	junction_1	63.7582102556212	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTGAGTCCTTAAATCT	3122	False	NA	1	True	NA	NA	NA	44711916	44727610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUSG00000003421.14_1	chr7	+	2362	8	NIC	ENSMUSG00000003421.14	novel	1814	9	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	417	junction_1	68.1190434579982	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGCCTGGCGCCTCATT	3123	False	NA	26	True	AATAAA	-17	NA	44711917	44726839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUSG00000003421.14_13	chr7	+	1758	9	NIC	ENSMUSG00000003421.14	novel	1814	9	NA	NA	-2	-12	combination_of_known_junctions	FALSE	canonical	3	53	junction_4	158.639479244607	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATCTGGCCAAATTCTT	3123	False	NA	13	True	NA	NA	NA	44711917	44727622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724106_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUSG00000003421.14_17	chr7	+	1725	8	ISM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	11032	15	-72	-15	3prime_fragment	FALSE	canonical	3	428	junction_7	60.82527670068	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAAATCTGGCCAAATT	NA	False	NA	10	True	NA	NA	NA	44722911	44727619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUSG00000003421.14_2	chr7	+	1694	9	FSM	ENSMUSG00000003421.14	ENSMUST00000107829.9	972	9	62	-784	2	-10	multi-exon	FALSE	canonical	3	37	junction_6	164.802912595621	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTGGCCAAATTCTTTG	3120	False	NA	15	True	NA	NA	NA	44711914	44727624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44726050_44726164_44726244_44726354_44726735
ENSMUSG00000003423.16_1	chr7	+	1041	10	FSM	ENSMUSG00000003423.16	ENSMUST00000210139.2	1077	10	30	6	-16	0	multi-exon	FALSE	canonical	3	233	junction_1	50.5151242478703	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAGCTCCAGACAATGA	NA	False	NA	15	True	AATAAA	-15	NA	44803756	44809483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44803845_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000003423.16_2	chr7	+	1077	10	NIC	ENSMUSG00000003423.16	novel	1077	10	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	115.92792567202	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCTCCAGACAATGATGC	NA	False	NA	18	True	AATAAA	-18	NA	44803736	44809486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44803845_44805716_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000003423.16_21	chr7	+	3652	7	NIC	ENSMUSG00000003423.16	novel	1185	10	NA	NA	5	0	intron_retention	FALSE	canonical	3	370	junction_2	18.1659021245849	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCCAGACAATGATGCAT	NA	False	NA	20	True	AATAAA	-20	NA	44803777	44809488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44805824_44806155_44806223_44807026_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000003423.16_3	chr7	+	1158	10	FSM	ENSMUSG00000003423.16	ENSMUST00000085375.13	1185	10	27	0	-8	0	multi-exon	FALSE	canonical	3	114	junction_1	85.8518678298646	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCCAGACAATGATGCAT	NA	False	NA	20	True	AATAAA	-20	NA	44803764	44809488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44803965_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000003423.16_6	chr7	+	1446	9	ISM	ENSMUSG00000003423.16	ENSMUST00000085375.13	1185	10	1499	5	-130	0	3prime_fragment	FALSE	canonical	3	336	junction_3	22.7705950734714	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAGCTCCAGACAATGA	NA	False	NA	15	True	AATAAA	-15	NA	44805236	44809483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000003429.12_1	chr7	-	585	5	FSM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	68	8	-20	6	multi-exon	FALSE	canonical	3	18027	junction_3	5229.01092463957	5408	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAACAGGCTTGGAGTCT	NA	False	NA	-9	True	AATAAA	-16	NA	44773795	44771810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUSG00000003435.10_1	chr7	-	3538	30	FSM	ENSMUSG00000003435.10	ENSMUST00000003527.10	3513	30	-29	4	-2	0	multi-exon	FALSE	canonical	3	628	junction_29	71.450522531579	1132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGTGTGTACGAAGAG	NA	False	NA	-15	True	AATAAA	-14	NA	28038173	28014322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776_28037861_28038119
ENSMUSG00000003435.10_18	chr7	-	3524	29	NIC	ENSMUSG00000003435.10	novel	3640	31	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_25	152.559502443192	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGTGTGTACGAAGAG	NA	False	NA	-15	True	AATAAA	-14	NA	28038171	28014322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28030004_28030071_28030794_28030955_28037776_28037861_28038119
ENSMUSG00000003435.10_3	chr7	-	3485	29	FSM	ENSMUSG00000003435.10	ENSMUST00000209141.2	3755	29	270	0	270	0	multi-exon	FALSE	canonical	3	668	junction_13	69.0304945924152	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGTGTGTACGAAGAG	NA	False	NA	-15	True	AATAAA	-14	NA	28037861	28014322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776
ENSMUSG00000003437.15_2	chr7	+	1973	14	FSM	ENSMUSG00000003437.15	ENSMUST00000003529.9	2003	14	24	6	13	-1	multi-exon	FALSE	canonical	3	164	junction_5	16.9726546514433	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCATCTCCTAAAGTCTC	593	False	NA	14	True	AATAAA	-15	NA	28092399	28098807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
ENSMUSG00000003437.15_25	chr7	+	2035	13	NIC	ENSMUSG00000003437.15	novel	2003	14	NA	NA	27	-1	intron_retention	FALSE	canonical	3	164	junction_5	17.6562469272367	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCATCTCCTAAAGTCTC	607	False	NA	14	True	AATAAA	-15	NA	28092413	28098807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
ENSMUSG00000003438.18_1	chr7	-	1189	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	18	308	2	0	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	1636	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGTGTCCAGAGTCC	2674	False	NA	-2	True	AATAAA	-19	NA	28011479	28005248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
ENSMUSG00000003444.9_0	chr7	-	649	4	FSM	ENSMUSG00000003444.9	ENSMUST00000003536.9	1281	4	38	594	38	-594	multi-exon	FALSE	canonical	3	529	junction_2	10.3387082795139	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACAGGTGGTTCCTGTTG	NA	False	NA	-23	True	AATGAA	-15	NA	28092095	28086164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28086450_28090236_28090322_28090514_28090574_28091875
ENSMUSG00000003444.9_1	chr7	-	754	5	NNC	ENSMUSG00000003444.9	novel	1281	4	NA	NA	38	-594	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	249.415692168717	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACAGGTGGTTCCTGTTG	NA	False	NA	-23	True	AATGAA	-15	NA	28092095	28086164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_28086450_28086623_28086729_28090236_28090322_28090514_28090574_28091875
ENSMUSG00000003452.16_0	chr6	+	4066	7	ISM	ENSMUSG00000003452.16	ENSMUST00000003544.14	2928	10	-400	36412	13	-117	5prime_fragment	FALSE	canonical	3	14	junction_4	5.13160143944688	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTATGTATTTTTCTTG	195	False	NA	NA	False	ATTAAA	-17	NA	149310526	149421817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_149311140_149385481_149385695_149396057_149396211_149413189_149413616_149414293_149415389_149418430_149418583_149420403
ENSMUSG00000003452.16_1	chr6	+	3105	1	FSM	ENSMUSG00000003452.16	ENSMUST00000203502.2	10443	1	143	7195	13	-7195	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	195	False	NA	NA	False	NA	NA	NA	149310526	149313631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_149310500_149313600
ENSMUSG00000003452.16_2	chr6	+	3167	9	FSM	ENSMUSG00000003452.16	ENSMUST00000086829.11	9667	9	73	6427	-12	171	multi-exon	FALSE	canonical	3	5	junction_7	6.68487097856047	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGTGTGATCAATTTCTG	223	False	NA	NA	False	AATAAA	-14	NA	149310554	149458400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_149311140_149385481_149385695_149396057_149396211_149413189_149413616_149414293_149415389_149418430_149418583_149420403_149420612_149451847_149451924_149458141
ENSMUSG00000003452.16_4	chr6	+	5411	8	FSM	ENSMUSG00000003452.16	ENSMUST00000111513.9	4049	8	62	-1424	9	386	multi-exon	FALSE	canonical	3	6	junction_7	6.57763681898362	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGTTGTAGACATTTTG	244	False	NA	NA	False	ATTAAA	-29	NA	149310575	149460741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_149311140_149385481_149385695_149396057_149396211_149413189_149413616_149414293_149415389_149418430_149418583_149420403_149420612_149458141
ENSMUSG00000003452.16_8	chr6	+	2075	1	ISM	ENSMUSG00000003452.16	ENSMUST00000086829.11	9667	9	149885	2386	12987	2086	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCTTGCATTAAGGC	NA	False	NA	NA	False	AATAAA	-13	NA	149460366	149462441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_149460400_149462400
ENSMUSG00000003452.16_9	chr6	+	5551	8	NIC	ENSMUSG00000003452.16	novel	2928	10	NA	NA	13	367	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	8.17162836918577	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAATTCTACAAATGCT	195	False	NA	NA	False	ATTAAA	-10	NA	149310526	149460722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_149311140_149385481_149385695_149396057_149396211_149413189_149413616_149414293_149415389_149418430_149418583_149420403_149420722_149458141
ENSMUSG00000003458.13_0	chr1	-	2785	17	FSM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	103	13	103	-13	multi-exon	FALSE	canonical	3	465	junction_8	31.8580224394108	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACAATTTGTACTTGTTG	9099	False	NA	37	True	ATTAAA	-8	NA	171910259	171893592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
ENSMUSG00000003458.13_1	chr1	-	2898	18	FSM	ENSMUSG00000003458.13	ENSMUST00000140643.8	3016	18	105	13	105	-13	multi-exon	FALSE	canonical	3	15	junction_16	166.01196438311	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACAATTTGTACTTGTTG	9101	False	NA	37	True	ATTAAA	-8	NA	171910257	171893592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171903192_171903308_171908778_171908884_171910167
ENSMUSG00000003464.14_0	chr1	+	1901	8	FSM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	13	3	-5	-3	multi-exon	FALSE	canonical	3	409	junction_6	20.1666526114529	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGGGTTATTTTTC	NA	False	NA	21	True	AATAAA	-11	NA	171954334	171962847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
ENSMUSG00000003464.14_1	chr1	+	1848	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	126.880950146994	93	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGGGTTATTTTTC	NA	False	NA	21	True	AATAAA	-11	NA	171954337	171962847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_171954416_171956197_171956308_171956771_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
ENSMUSG00000003469.10_1	chr14	+	2847	5	FSM	ENSMUSG00000003469.10	ENSMUST00000003561.10	2838	5	-21	12	-21	-12	multi-exon	FALSE	canonical	1	1	junction_1	2.17944947177034	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGGCTCCGTCTGTCTTGG	NA	False	NA	1	True	AATAAA	-13	NA	70694894	70706260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_70695244_70699178_70699364_70700679_70700855_70702889_70703008_70704240
ENSMUSG00000003476.17_0	chr6	-	1836	4	ISM	ENSMUSG00000003476.17	ENSMUST00000114374.9	1440	12	24347	-1164	7007	0	3prime_fragment	FALSE	canonical	1	1	junction_2	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCAGCCTTACGCATTTTT	NA	False	NA	NA	False	NA	NA	NA	55070551	55067033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_55068404_55069497_55069540_55069936_55070073_55070263
ENSMUSG00000003500.14_0	chr6	-	2405	14	FSM	ENSMUSG00000003500.14	ENSMUST00000078155.12	2437	14	27	5	-21	3	multi-exon	TRUE	canonical	1	70	junction_10	46.9877234375763	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCTCTGTGATCCTGTT	-4	True	NA	-6	True	AATAAA	-14	NA	29212269	29200440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067
ENSMUSG00000003500.14_3	chr6	-	2555	15	FSM	ENSMUSG00000003500.14	ENSMUST00000162099.8	2580	15	21	4	10	3	multi-exon	FALSE	canonical	1	42	junction_14	63.7043554080817	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCTCTGTGATCCTGTT	-2	True	NA	-6	True	AATAAA	-14	NA	29216320	29200440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212170_29216070
ENSMUSG00000003500.14_7	chr6	-	2552	15	FSM	ENSMUSG00000003500.14	ENSMUST00000159124.8	2600	15	43	5	10	3	multi-exon	FALSE	canonical	1	64	junction_14	59.8544152123146	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCTCTGTGATCCTGTT	-2	True	NA	-6	True	AATAAA	-14	NA	29216320	29200440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212167_29216070
ENSMUSG00000003518.14_0	chr11	-	4173	3	FSM	ENSMUSG00000003518.14	ENSMUST00000003612.13	4212	3	31	8	10	-8	multi-exon	FALSE	canonical	3	8	junction_1	3.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACAAAGACGTCTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	101875594	101861976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101865766_101872442_101872670_101875437
ENSMUSG00000003518.14_1	chr11	-	2612	1	ISM	ENSMUSG00000003518.14	ENSMUST00000151678.8	4084	3	9741	8	7926	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACAAAGACGTCTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	101864588	101861976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_101862000_101864600
ENSMUSG00000003526.13_0	chr16	-	2247	14	FSM	ENSMUSG00000003526.13	ENSMUST00000003620.13	2386	14	129	10	0	-9	multi-exon	FALSE	canonical	3	102	junction_5	13.1900087703135	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGTCATCACCTTTCT	8072	False	NA	-10	True	AATAAA	-10	NA	17907027	17889598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898392_17898789_17898940_17899394_17899430_17902410_17902620_17906751
ENSMUSG00000003526.13_11	chr16	-	2828	12	NIC	ENSMUSG00000003526.13	novel	2386	14	NA	NA	0	-6	intron_retention	FALSE	canonical	3	102	junction_5	11.3705433554579	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTCATCACCTTTCTCTT	8072	False	NA	-7	True	AATAAA	-13	NA	17907027	17889595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898940_17899394_17899430_17902410_17902620_17906751
ENSMUSG00000003527.10_0	chr16	-	1736	10	FSM	ENSMUSG00000003527.10	ENSMUST00000003621.10	2821	10	29	1056	-4	1053	multi-exon	FALSE	canonical	3	145	junction_7	18.4397584408805	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCAGGCTGCTGATCCAT	NA	False	NA	-1	True	ATTAAA	-18	NA	17729183	17719628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17720188_17720681_17720798_17722865_17722976_17724134_17724238_17724972_17725107_17725383_17725502_17725613_17725787_17727768_17727865_17727951_17728121_17729025
ENSMUSG00000003527.10_1	chr16	-	1733	10	FSM	ENSMUSG00000003527.10	ENSMUST00000232423.2	2785	10	-4	1056	-4	1053	multi-exon	FALSE	canonical	3	90	junction_7	33.1126025018337	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCAGGCTGCTGATCCAT	NA	False	NA	-1	True	ATTAAA	-18	NA	17729183	17719628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17720188_17720681_17720798_17722865_17722976_17724134_17724238_17724972_17725107_17725383_17725502_17725613_17725784_17727768_17727865_17727951_17728121_17729025
ENSMUSG00000003527.10_6	chr16	-	3949	9	NIC	ENSMUSG00000003527.10	novel	2821	10	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	145	junction_6	19.4032052764485	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTATTTTTCTATCAATT	NA	False	NA	-2	True	NA	NA	NA	17729183	17718574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17720188_17720681_17720798_17722865_17724238_17724972_17725107_17725383_17725502_17725613_17725787_17727768_17727865_17727951_17728121_17729025
ENSMUSG00000003528.16_0	chr16	-	1626	9	FSM	ENSMUSG00000003528.16	ENSMUST00000003622.16	1666	9	39	1	29	-1	multi-exon	FALSE	canonical	3	1593	junction_8	124.030175259894	1635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCCTGTCCATCCCTTT	NA	False	NA	-22	True	AATAAA	-15	NA	17746044	17743087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744404_17744519_17744605_17745017_17745157_17745230_17745331_17745408_17745517_17745849
ENSMUSG00000003528.16_1	chr16	-	1665	8	ISM	ENSMUSG00000003528.16	ENSMUST00000003622.16	1666	9	333	1	1	-1	3prime_fragment	FALSE	canonical	3	1746	junction_4	80.7002516244212	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCCTGTCCATCCCTTT	NA	False	NA	-22	True	AATAAA	-15	NA	17745750	17743087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744404_17744519_17744605_17745017_17745157_17745230_17745331_17745408
ENSMUSG00000003531.16_0	chr16	+	1035	5	FSM	ENSMUSG00000003531.16	ENSMUST00000151266.8	1086	5	31	20	-9	0	multi-exon	FALSE	canonical	3	350	junction_3	38.8546972707291	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCTGTGCTACCTAG	NA	False	NA	10	True	AATAAA	-16	NA	17884297	17889207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887954_17888096_17888741
ENSMUSG00000003531.16_1	chr16	+	1034	5	FSM	ENSMUSG00000003531.16	ENSMUST00000066027.14	1050	5	-1	17	-1	-1	multi-exon	FALSE	canonical	3	112	junction_3	141.891463802443	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGTGTCTGTGCTACCT	NA	False	NA	8	True	AATAAA	-14	NA	17884305	17889205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887945_17888096_17888741
ENSMUSG00000003531.16_14	chr16	+	1121	4	ISM	ENSMUSG00000003531.16	ENSMUST00000076757.12	894	5	1285	-1	1	0	3prime_fragment	FALSE	canonical	3	350	junction_2	42.6796855137846	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCTGTGCTACCTAG	NA	False	NA	10	True	AATAAA	-16	NA	17884307	17889207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_17884721_17887287_17887389_17887954_17888096_17888741
ENSMUSG00000003534.18_11	chr17	-	3074	12	ISM	ENSMUSG00000003534.18	ENSMUST00000119825.8	3769	18	10219	13	7580	-10	3prime_fragment	FALSE	canonical	3	13	junction_10	9.54502163520486	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTTCCACAGCTGTGG	5356	False	NA	-12	True	AATAAA	-22	NA	36001283	35992471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885
ENSMUSG00000003534.18_14	chr17	-	2734	11	ISM	ENSMUSG00000003534.18	ENSMUST00000119825.8	3769	18	10651	1	8012	-1	3prime_fragment	FALSE	canonical	3	13	junction_10	9.58331884056875	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGGGTGTATTTCCTG	5788	False	NA	0	True	AATAAA	-34	NA	36000851	35992459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_36000558
ENSMUSG00000003534.18_2	chr17	-	3634	17	NIC	ENSMUSG00000003534.18	novel	3769	18	NA	NA	12	-9	combination_of_known_junctions	FALSE	canonical	3	11	junction_15	11.1186779789685	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCCACAGCTGTGGG	9059	False	NA	-11	True	AATAAA	-23	NA	36011490	35992470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36011322
ENSMUSG00000003534.18_21	chr17	-	3707	18	NIC	ENSMUSG00000003534.18	novel	3769	18	NA	NA	160	-16	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	11.600620434428	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGTTTTTCCACAG	6891	False	NA	-18	True	AATAAA	-16	NA	36008703	35992477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36008566
ENSMUSG00000003534.18_4	chr17	-	3745	18	FSM	ENSMUSG00000003534.18	ENSMUST00000119825.8	3769	18	11	13	11	-10	multi-exon	FALSE	canonical	3	11	junction_16	10.4162502800285	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTTCCACAGCTGTGG	9058	False	NA	-12	True	AATAAA	-22	NA	36011491	35992471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36011322
ENSMUSG00000003534.18_6	chr17	-	3609	18	FSM	ENSMUSG00000003534.18	ENSMUST00000166980.9	3627	18	20	-2	20	-1	multi-exon	TRUE	canonical	0	0	junction_17	11.600620434428	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGGGTGTATTTCCTG	7633	False	NA	0	True	AATAAA	-34	NA	36012916	35992459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36012895
ENSMUSG00000003541.7_0	chr17	+	1116	2	FSM	ENSMUSG00000003541.7	ENSMUST00000003635.7	1131	2	2	13	2	-13	multi-exon	FALSE	canonical	3	7	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTATCTGCAGTTCTCG	NA	False	NA	3	True	AATAAA	-16	NA	36132577	36133802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36132821_36132929
ENSMUSG00000003546.11_1	chr17	-	2311	16	FSM	ENSMUSG00000003546.11	ENSMUST00000233974.2	2313	16	-5	7	-5	0	multi-exon	FALSE	canonical	3	47	junction_15	23.4960043884534	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	False	NA	-9	True	AATAAA	-11	NA	46956953	46941556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956900
ENSMUSG00000003546.11_14	chr17	-	2260	15	ISM	ENSMUSG00000003546.11	ENSMUST00000003642.7	2322	16	630	0	630	0	3prime_fragment	FALSE	canonical	3	64	junction_7	21.3557094597818	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	False	NA	-9	True	AATAAA	-11	NA	46955440	46941556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174
ENSMUSG00000003546.11_2	chr17	-	2367	17	NNC	ENSMUSG00000003546.11	novel	2322	16	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_16	30.5511226266728	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	False	NA	-9	True	AATAAA	-11	NA	46956936	46941556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006_46956080_46956900
ENSMUSG00000003546.11_4	chr17	-	2441	16	FSM	ENSMUSG00000003546.11	ENSMUST00000003642.7	2322	16	-119	0	-119	0	multi-exon	FALSE	canonical	3	33	junction_15	25.3531501439608	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	False	NA	-9	True	AATAAA	-11	NA	46956189	46941556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006
ENSMUSG00000003546.11_8	chr17	-	901	6	ISM	ENSMUSG00000003546.11	ENSMUST00000003642.7	2322	16	9385	0	9385	0	3prime_fragment	FALSE	canonical	3	105	junction_5	12.4354332453679	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	False	NA	-9	True	AATAAA	-11	NA	46946685	46941556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657
ENSMUSG00000003549.10_0	chr7	+	1045	10	FSM	ENSMUSG00000003549.10	ENSMUST00000003645.9	1375	10	328	2	-1	0	multi-exon	TRUE	canonical	3	315	junction_9	39.5851948880006	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCAGTGGCTCTGCGTGT	1039	False	NA	13	True	AATAAA	-18	NA	19079030	19090447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
ENSMUSG00000003549.10_13	chr7	+	920	9	ISM	ENSMUSG00000003549.10	ENSMUST00000003645.9	1375	10	863	1	481	0	3prime_fragment	FALSE	canonical	3	315	junction_8	39.8959584419274	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTGGCTCTGCGTGTT	1574	False	NA	14	True	AATAAA	-19	NA	19079565	19090448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
ENSMUSG00000003549.10_3	chr7	+	1052	10	NNC	ENSMUSG00000003549.10	novel	1375	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_8	110.932857014647	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTGGCTCTGCGTGTT	1040	False	NA	14	True	AATAAA	-19	NA	19079031	19090448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089105_19089217_19089287_19090343
ENSMUSG00000003559.9_0	chr19	+	1713	11	FSM	ENSMUSG00000003559.9	ENSMUST00000003655.9	1736	11	9	14	9	-6	multi-exon	FALSE	canonical	3	159	junction_6	16.3612346722367	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATAATTGATACCACAATG	5983	False	NA	16	True	AATAAA	-26	NA	46695905	46729520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46695976_46696194_46696239_46696508_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
ENSMUSG00000003559.9_1	chr19	+	1692	11	NNC	ENSMUSG00000003559.9	novel	1736	11	NA	NA	20	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	55.9750837426797	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCACCTTGATAATTGAT	5994	False	NA	7	True	AATAAA	-17	NA	46695916	46729511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_46695976_46696194_46696239_46696508_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708328_46708460_46708752_46708896_46713342_46713478_46728899
ENSMUSG00000003559.9_16	chr19	+	1679	10	ISM	ENSMUSG00000003559.9	ENSMUST00000003655.9	1736	11	248	28	29	-20	3prime_fragment	FALSE	canonical	3	159	junction_5	17.1859833786536	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCAGTTCACCTTGATAA	6222	False	NA	2	True	AATAAA	-12	NA	46696144	46729506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46696239_46696508_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
ENSMUSG00000003573.16_1	chr8	+	2395	10	FSM	ENSMUSG00000003573.16	ENSMUST00000110124.9	2445	10	32	18	-3	-10	multi-exon	FALSE	canonical	3	142	junction_9	38.9171326009065	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAGTAAATGAAGTGAGA	NA	False	NA	NA	False	AATAAA	-7	NA	70735680	70746993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166_70744254_70745624
ENSMUSG00000003573.16_15	chr8	+	1714	9	ISM	ENSMUSG00000003573.16	ENSMUST00000110124.9	2445	10	31	2071	-4	552	5prime_fragment	FALSE	canonical	3	150	junction_8	37.4814537471534	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAAGCATTCTTCCCTCCT	NA	False	NA	15	True	ATTAAA	-24	NA	70735679	70744940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166
ENSMUSG00000003573.16_6	chr8	+	689	5	FSM	ENSMUSG00000003573.16	ENSMUST00000087467.12	880	5	203	-12	-4	12	multi-exon	FALSE	canonical	3	53	junction_4	81.1202810646018	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCTTTGGTGTAAATGT	NA	False	NA	NA	False	ATTAAA	-21	NA	70735679	70739192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70738945
ENSMUSG00000003573.16_7	chr8	+	2564	9	NIC	ENSMUSG00000003573.16	novel	2445	10	NA	NA	-11	-3	intron_retention	FALSE	canonical	3	142	junction_8	39.3660704160321	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAGTGAGATCTGGCT	NA	False	NA	NA	False	AATAAA	-14	NA	70735672	70747000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70744079_70744166_70744254_70745624
ENSMUSG00000003573.16_8	chr8	+	2087	4	FSM	ENSMUSG00000003573.16	ENSMUST00000155711.2	678	4	-22	-1387	13	1159	multi-exon	FALSE	canonical	3	219	junction_1	13.6707311029399	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTATTTTCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	70735661	70740339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580
ENSMUSG00000003575.14_0	chr8	-	2565	1	ISM	ENSMUSG00000003575.14	ENSMUST00000076615.6	5683	14	54660	0	17879	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCCTCTTCCTCTTTTTC	2089	False	NA	-4	True	AATAAA	-18	NA	70837569	70835004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_70835000_70837600
ENSMUSG00000003575.14_10	chr8	-	2407	13	NIC	ENSMUSG00000003575.14	novel	5683	14	NA	NA	-28	-3187	intron_retention	FALSE	canonical	1	2	junction_12	15.4919333848297	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTTTATATTCCTGAGC	5185	False	NA	NA	False	AATAAA	-16	NA	70892257	70838191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844814_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908_70857971_70858727_70858866_70892082
ENSMUSG00000003575.14_17	chr8	-	1447	4	FSM	ENSMUSG00000003575.14	ENSMUST00000125613.8	870	4	-37	-540	-33	540	multi-exon	FALSE	canonical	3	61	junction_2	6.48074069840786	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTAACTGCACACAGTGT	5180	False	NA	-11	True	NA	NA	NA	70892262	70856958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70857971_70858727_70858866_70861544_70861662_70892082
ENSMUSG00000003575.14_18	chr8	-	929	5	NNC	ENSMUSG00000003575.14	novel	870	4	NA	NA	-11	534	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	29.1247317584214	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTATATAGTAACTGCACA	5202	False	NA	-17	True	NA	NA	NA	70892240	70856964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_70857419_70857908_70857971_70858727_70858866_70861544_70861662_70892082
ENSMUSG00000003575.14_2	chr8	-	2522	14	FSM	ENSMUSG00000003575.14	ENSMUST00000076615.6	5683	14	-18	3179	-18	-3179	multi-exon	FALSE	canonical	3	29	junction_8	14.7616166270428	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCCTGAGCGCTCTTGC	5195	False	NA	NA	False	AATAAA	-24	NA	70892247	70838183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844814_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908_70857971_70858727_70858866_70861544_70861662_70892082
ENSMUSG00000003575.14_20	chr8	-	1298	3	NIC	ENSMUSG00000003575.14	novel	870	4	NA	NA	-12	529	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	37	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAACTATATAGTAACT	5201	False	NA	-22	True	NA	NA	NA	70892241	70856969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70857971_70858727_70858866_70892082
ENSMUSG00000003575.14_21	chr8	-	5570	13	NIC	ENSMUSG00000003575.14	novel	5683	14	NA	NA	11	-3	intron_retention	FALSE	canonical	1	2	junction_9	19.1113331705445	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGGGCCTCTTCCTCTTT	5228	False	NA	-7	True	AATAAA	-15	NA	70892214	70835007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844814_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70857908_70857971_70858727_70858866_70861544_70861662_70892082
ENSMUSG00000003575.14_3	chr8	-	2415	15	NIC	ENSMUSG00000003575.14	novel	5683	14	NA	NA	-19	-3179	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	18.0759452289048	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCCTGAGCGCTCTTGC	5194	False	NA	NA	False	AATAAA	-24	NA	70892248	70838183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844562_70844669_70844814_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908_70857971_70858727_70858866_70861544_70861662_70892082
ENSMUSG00000003575.14_9	chr8	-	3190	12	NIC	ENSMUSG00000003575.14	novel	5683	14	NA	NA	-32	-3187	intron_retention	FALSE	canonical	1	2	junction_9	16.9291181495763	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTTTATATTCCTGAGC	5181	False	NA	NA	False	AATAAA	-16	NA	70892261	70838191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844814_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70857908_70858866_70861544_70861662_70892082
ENSMUSG00000003581.15_0	chr11	+	1892	9	FSM	ENSMUSG00000003581.15	ENSMUST00000003677.11	1874	9	-18	0	-18	0	multi-exon	FALSE	canonical	3	21	junction_6	6.41165930161608	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCTGTTAAGACATAA	7832	False	NA	NA	False	AATAAA	-19	NA	4085183	4091172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711_4086798_4087211_4087369_4089738_4089859_4089934_4090079_4090297_4090401_4090486
ENSMUSG00000003581.15_13	chr11	+	4958	5	NIC	ENSMUSG00000003581.15	novel	1874	9	NA	NA	-8	-3	intron_retention	FALSE	canonical	3	22	junction_1	6.37867541108654	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAAATCTGTTAAGACA	7842	False	NA	NA	False	AATAAA	-16	NA	4085193	4091169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711_4090401_4090486
ENSMUSG00000003581.15_14	chr11	+	5035	4	FSM	ENSMUSG00000093080.3_ENSMUSG00000003581.15	ENSMUST00000127165.2	722	4	-304	-4009	-4	-8	multi-exon	FALSE	canonical	3	22	junction_1	4.89897948556636	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTAACATAAATCTGTTA	7846	False	NA	NA	False	AATAAA	-11	NA	4085197	4091164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711
ENSMUSG00000003581.15_7	chr11	+	2311	8	NIC	ENSMUSG00000003581.15	novel	1874	9	NA	NA	-26	-3	intron_retention	FALSE	canonical	3	21	junction_5	6.53405521487387	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAAATCTGTTAAGACA	7824	False	NA	NA	False	AATAAA	-16	NA	4085175	4091169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711_4087369_4089738_4089859_4089934_4090079_4090297_4090401_4090486
ENSMUSG00000003581.15_9	chr11	+	1813	7	NIC	ENSMUSG00000003581.15	novel	1874	9	NA	NA	-23	-3	intron_retention	FALSE	canonical	3	4	junction_4	11.8836956466506	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAAATCTGTTAAGACA	7827	False	NA	NA	False	AATAAA	-16	NA	4085178	4091169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711_4086798_4089738_4090079_4090297_4090401_4090486
ENSMUSG00000003585.14_1	chr11	-	2574	12	FSM	ENSMUSG00000003585.14	ENSMUST00000003681.8	2631	12	49	8	-29	-8	multi-exon	FALSE	canonical	3	7	junction_11	8.90816321700644	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAAGAGCAGAATTCA	NA	False	NA	-8	True	AATAAA	-14	NA	4068782	4047046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4066680_4066757_4068624
ENSMUSG00000003585.14_2	chr11	-	2671	12	NIC	ENSMUSG00000003585.14	novel	2631	12	NA	NA	0	-3	combination_of_known_splicesites	TRUE	canonical	2	2	junction_11	9.93865481361196	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGCAGAATTCATTGCC	NA	False	NA	-3	True	AATAAA	-19	NA	4073415	4047041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4066680_4066757_4073165
ENSMUSG00000003585.14_3	chr11	-	1161	1	ISM	ENSMUSG00000003585.14	ENSMUST00000003681.8	2631	12	20624	8	10804	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAAGAGCAGAATTCA	NA	False	NA	-8	True	AATAAA	-14	NA	4048207	4047046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_4047000_4048200
ENSMUSG00000003585.14_4	chr11	-	2896	13	NNC	ENSMUSG00000003585.14	novel	2631	12	NA	NA	-4	-8	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_12	10.820184327861	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAAGAGCAGAATTCA	NA	False	NA	-8	True	AATAAA	-14	NA	4073419	4047046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4066680_4066757_4068624_4068851_4073165
ENSMUSG00000003585.14_5	chr11	-	2594	11	NIC	ENSMUSG00000003585.14	novel	2631	12	NA	NA	-4	-8	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	5.85149553533112	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAAGAGCAGAATTCA	NA	False	NA	-8	True	AATAAA	-14	NA	4073419	4047046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4073165
ENSMUSG00000003604.15_1	chr2	+	1420	6	FSM	ENSMUSG00000003604.15	ENSMUST00000003705.12	4735	6	-7	3322	-7	340	multi-exon	FALSE	canonical	3	555	junction_4	26.4227174983952	427	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGATGTTTCCTTTCTTC	NA	False	NA	2	True	AATAAA	-13	NA	112323301	112461596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_112323567_112344794_112344973_112455499_112455571_112458093_112458190_112460084_112460422_112461123
ENSMUSG00000003623.5_17	chr5	-	2592	17	ISM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	775	185	493	-185	3prime_fragment	FALSE	canonical	3	168	junction_6	21.4938217867368	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTAATTGTTAGAGCTAG	NA	False	NA	-7	True	ATTAAA	-14	NA	9046549	9016217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451
ENSMUSG00000003623.5_3	chr5	-	2646	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	170	180	-112	-180	multi-exon	FALSE	canonical	3	168	junction_6	20.8630399507397	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTAGAGCTAGCAGCT	NA	False	NA	-2	True	ATTAAA	-19	NA	9047154	9016212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
ENSMUSG00000003623.5_8	chr5	-	2889	17	NIC	ENSMUSG00000003623.5	novel	2996	18	NA	NA	-125	-178	intron_retention	FALSE	canonical	3	171	junction_8	19.5572077505967	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTAGAGCTAGCAGCTTT	NA	False	NA	0	True	ATTAAA	-21	NA	9047167	9016210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
ENSMUSG00000003644.18_1	chr4	-	3116	22	FSM	ENSMUSG00000003644.18	ENSMUST00000105894.11	3135	22	12	7	-1	-3	multi-exon	FALSE	canonical	3	996	junction_6	97.2257582771271	2444	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTAAAGCGCCCGCTCTTC	7976	False	NA	-12	True	AATAAA	-11	NA	133615096	133574607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592743_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133608227_133608273_133614880
ENSMUSG00000003657.10_0	chr8	-	1144	9	NNC	ENSMUSG00000003657.10	novel	1431	11	NA	NA	15138	-2	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_8	57.2319840648566	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTCACCCGTTTCTTGT	NA	False	NA	-14	True	AATAAA	-20	NA	110879700	110869171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110879655
ENSMUSG00000003657.10_1	chr8	-	1434	11	FSM	ENSMUSG00000003657.10	ENSMUST00000003754.8	1431	11	-5	2	-1	-2	multi-exon	FALSE	canonical	3	153	junction_9	44.1960405466372	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTCACCCGTTTCTTGT	7611	False	NA	-14	True	AATAAA	-20	NA	110894843	110869171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110881284_110881375_110883551_110883629_110894675
ENSMUSG00000003660.11_0	chr2	+	6735	45	FSM	ENSMUSG00000003660.11	ENSMUST00000103220.4	6745	45	1	9	1	-9	multi-exon	FALSE	canonical	3	516	junction_16	102.022451345341	881	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACTATATGTCCTTAA	NA	False	NA	6	True	AATAAA	-8	NA	127050319	127082362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_127050459_127050893_127051058_127052613_127052786_127053519_127053713_127054268_127054325_127056726_127056826_127057968_127058122_127058273_127058374_127058532_127058670_127059148_127059233_127059311_127059486_127059792_127059931_127060272_127060429_127060948_127061120_127063664_127063859_127064050_127064175_127066500_127066651_127067002_127067114_127067925_127068058_127068214_127068404_127068864_127069063_127069796_127069950_127070064_127070146_127070461_127070546_127070978_127071086_127071405_127071525_127071805_127071961_127072053_127072244_127072433_127072608_127073606_127073768_127074325_127074554_127074820_127075013_127075099_127075279_127075419_127075572_127076883_127076993_127077879_127077989_127078378_127078569_127078659_127078825_127079380_127079503_127079742_127079887_127079978_127080156_127080419_127080581_127080658_127080741_127081798_127081892_127081988
ENSMUSG00000003662.11_0	chr2	-	1384	7	FSM	ENSMUSG00000003662.11	ENSMUST00000003759.11	3075	7	69	1622	69	60	multi-exon	FALSE	canonical	3	164	junction_2	19.7793382655291	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAGAGCTTTTGAAAT	NA	False	NA	-24	True	AATATA	-18	NA	127089667	127084479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127084958_127086832_127086921_127087642_127087845_127088332_127088422_127088521_127088634_127088929_127089079_127089401
ENSMUSG00000003662.11_8	chr2	-	1119	6	ISM	ENSMUSG00000003662.11	ENSMUST00000003759.11	3075	7	657	1622	461	60	3prime_fragment	FALSE	canonical	3	164	junction_2	21.0276009092811	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAGAGCTTTTGAAAT	NA	False	NA	-24	True	AATATA	-18	NA	127089079	127084479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_127084958_127086832_127086921_127087642_127087845_127088332_127088422_127088521_127088634_127088929
ENSMUSG00000003680.17_1	chr19	-	3542	15	Fusion	ENSMUSG00000003680.17_ENSMUSG00000118346.2	novel	2065	12	NA	NA	-5	-3	intron_retention	FALSE	canonical	3	151	junction_7	37.4346369131093	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGGCATGGATTTCTTG	9931	False	NA	-8	True	AATATA	-13	NA	8763650	8749892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
ENSMUSG00000003680.17_17	chr19	-	1978	12	NIC	ENSMUSG00000003680.17	novel	2065	12	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_11	58.6434808929319	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGACGTGTCTATGCTCG	9928	False	NA	-5	True	AATAAA	-12	NA	8763653	8751857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763631
ENSMUSG00000003680.17_21	chr19	-	2227	13	NIC	ENSMUSG00000003680.17	novel	2065	12	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_11	69.7284415110187	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGACGTGTCTATGCTCG	9932	False	NA	-5	True	AATAAA	-12	NA	8763649	8751857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8762996_8763192_8763573
ENSMUSG00000003680.17_23	chr19	-	1979	11	FSM	ENSMUSG00000003680.17	ENSMUST00000177056.8	2006	11	26	1	-9	-1	multi-exon	FALSE	canonical	3	11	junction_10	58.7504042539283	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGACGTGTCTATGCTC	9927	False	NA	-6	True	AATAAA	-11	NA	8763654	8751858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8763573
ENSMUSG00000003680.17_8	chr19	-	2035	12	FSM	ENSMUSG00000003680.17	ENSMUST00000176610.9	2065	12	28	2	-7	0	multi-exon	FALSE	canonical	3	151	junction_4	26.5722156514676	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGACGTGTCTATGCTCG	9929	False	NA	-5	True	AATAAA	-12	NA	8763652	8751857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
ENSMUSG00000003721.15_1	chr1	-	2420	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	271	6	-7	-6	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCATGTGTTAGTCCTTT	NA	False	NA	-7	True	ATTAAA	-11	NA	121255482	121232087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
ENSMUSG00000003721.15_10	chr1	-	2049	5	FSM	ENSMUSG00000003721.15	ENSMUST00000186915.2	674	5	-37	-1338	9	-4	multi-exon	FALSE	canonical	3	11	junction_4	81.0524521529115	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTGTTAGTCCTTTTT	NA	False	NA	-5	True	ATTAAA	-13	NA	121255485	121232085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121255419
ENSMUSG00000003721.15_13	chr1	-	1197	1	ISM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	22469	6	1763	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCATGTGTTAGTCCTTT	NA	False	NA	-7	True	ATTAAA	-11	NA	121233284	121232087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_121232100_121233300
ENSMUSG00000003721.15_5	chr1	-	2352	6	NIC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	-7	-7	combination_of_known_splicesites	FALSE	canonical	3	17	junction_5	70.4346505634833	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACCATGTGTTAGTCCTT	NA	False	NA	-8	True	ATTAAA	-10	NA	121255482	121232088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247635_121255419
ENSMUSG00000003721.15_9	chr1	-	2390	6	NIC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	-7	-4	combination_of_known_splicesites	FALSE	canonical	3	13	junction_4	72.0316597059932	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTGTTAGTCCTTTTT	NA	False	NA	-5	True	ATTAAA	-13	NA	121255482	121232085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247357_121247702_121255419
ENSMUSG00000003731.14_0	chr4	-	5670	14	FSM	ENSMUSG00000003731.14	ENSMUST00000102590.11	5710	14	29	11	29	-11	multi-exon	FALSE	canonical	3	106	junction_4	15.2943505832485	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTCTAAATTGTCTTCT	8863	False	NA	-8	True	AATAAA	-11	NA	129566531	129537783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129541973_129542990_129543170_129544476_129544605_129545380_129545507_129547230_129547310_129547634_129547799_129548080_129548181_129548657_129548747_129549222_129549355_129550100_129550196_129551181_129551282_129551560_129551654_129555098_129555233_129566469
ENSMUSG00000003731.14_12	chr4	-	5606	13	ISM	ENSMUSG00000003731.14	ENSMUST00000003828.11	2195	14	1042	-3493	1042	-11	3prime_fragment	TRUE	canonical	3	106	junction_4	15.4997759840443	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTCTAAATTGTCTTCT	3605	False	NA	-8	True	AATAAA	-11	NA	129555230	129537783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129541973_129542990_129543170_129544476_129544605_129545380_129545507_129547230_129547310_129547634_129547799_129548080_129548181_129548657_129548747_129549222_129549355_129550100_129550196_129551181_129551282_129551560_129551654_129555098
ENSMUSG00000003731.14_3	chr4	-	2995	1	ISM	ENSMUSG00000003731.14	ENSMUST00000102590.11	5710	14	25788	5	7956	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTGTCTTCTTTGGTT	1946	False	NA	-2	True	AATAAA	-17	NA	129540772	129537777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129537800_129540800
ENSMUSG00000003731.14_8	chr4	-	4297	2	ISM	ENSMUSG00000003731.14	ENSMUST00000003828.11	2195	14	13180	-3499	5636	-5	3prime_fragment	FALSE	canonical	3	141	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTGTCTTCTTTGGTT	7706	False	NA	-2	True	AATAAA	-17	NA	129543092	129537777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129541973_129542990
ENSMUSG00000003746.17_1	chr10	-	5068	13	FSM	ENSMUSG00000003746.17	ENSMUST00000003843.16	5137	13	61	8	1	-8	multi-exon	TRUE	canonical	3	6	junction_11	2.28977194400568	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCTCCTTCTGTGTCTTG	5544	False	NA	NA	False	AATAAA	-11	NA	53951831	53780888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_53783660_53784038_53784155_53795253_53795427_53796138_53796359_53801525_53801642_53809587_53809682_53810984_53811109_53853118_53853214_53890510_53890592_53901809_53901926_53906793_53906891_53950511_53951367_53951621
ENSMUSG00000003746.17_4	chr10	-	3135	4	ISM	ENSMUSG00000003746.17	ENSMUST00000003843.16	5137	13	155686	1	57005	-1	3prime_fragment	FALSE	canonical	3	9	junction_1	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTGTCTTGTCACTGT	NA	False	NA	NA	False	AATAAA	-18	NA	53796206	53780881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_53783660_53784038_53784155_53795253_53795427_53796138
ENSMUSG00000003746.17_5	chr10	-	4483	12	ISM	ENSMUSG00000003746.17	ENSMUST00000003843.16	5137	13	898	11	811	-11	3prime_fragment	FALSE	canonical	3	6	junction_11	2.3741027013092	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATACCTCCTTCTGTGTC	6381	False	NA	NA	False	AATAAA	-8	NA	53950994	53780891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_53783660_53784038_53784155_53795253_53795427_53796138_53796359_53801525_53801642_53809587_53809682_53810984_53811109_53853118_53853214_53890510_53890592_53901809_53901926_53906793_53906891_53950511
ENSMUSG00000003752.10_0	chr7	-	3228	7	NIC	ENSMUSG00000003752.10	novel	3247	7	NA	NA	13	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	17.0847560383193	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAACATTGTGGGTAT	NA	False	NA	-10	True	AATAAA	-7	NA	26928040	26906604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_26907870_26911734_26911809_26912384_26912487_26913800_26914006_26916376_26916591_26919024_26919128_26926775
ENSMUSG00000003752.10_1	chr7	-	3237	7	FSM	ENSMUSG00000003752.10	ENSMUST00000003850.8	3247	7	2	8	2	-8	multi-exon	FALSE	canonical	3	37	junction_2	5.28099317258495	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAACATTGTGGGTAT	NA	False	NA	-10	True	AATAAA	-7	NA	26928051	26906604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_26907870_26911736_26911809_26912384_26912487_26913800_26914006_26916376_26916591_26919024_26919128_26926775
ENSMUSG00000003752.10_2	chr7	-	1777	5	ISM	ENSMUSG00000003752.10	ENSMUST00000003850.8	3247	7	11544	8	-2630	-8	3prime_fragment	FALSE	canonical	3	37	junction_2	3.64005494464026	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAACATTGTGGGTAT	NA	False	NA	-10	True	AATAAA	-7	NA	26916509	26906604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_26907870_26911736_26911809_26912384_26912487_26913800_26914006_26916376
ENSMUSG00000003752.10_5	chr7	-	1080	1	ISM	ENSMUSG00000003752.10	ENSMUST00000003850.8	3247	7	20369	8	4793	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAACATTGTGGGTAT	NA	False	NA	-10	True	AATAAA	-7	NA	26907684	26906604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_26906600_26907700
ENSMUSG00000003762.14_12	chr7	+	2141	14	FSM	ENSMUSG00000003762.14	ENSMUST00000108378.10	2276	14	136	-1	-12	0	multi-exon	FALSE	canonical	3	76	junction_6	13.8260537867321	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGTTCTTTTCTCTCTG	NA	False	NA	17	True	AATAAA	-17	NA	26932773	26957370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
ENSMUSG00000003762.14_13	chr7	+	2104	15	NNC	ENSMUSG00000003762.14	novel	2276	14	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	26.4262547247148	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGTTCTTTTCTCTCTG	NA	False	NA	17	True	AATAAA	-17	NA	26932628	26957370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_26932708_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
ENSMUSG00000003762.14_2	chr7	+	2163	15	FSM	ENSMUSG00000003762.14	ENSMUST00000003860.13	2181	15	13	5	13	0	multi-exon	TRUE	canonical	3	74	junction_1	14.7544528041883	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGTTCTTTTCTCTCTG	NA	False	NA	17	True	AATAAA	-17	NA	26932460	26957370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_26932599_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
ENSMUSG00000003778.15_26	chr18	-	3219	22	FSM	ENSMUSG00000003778.15	ENSMUST00000003876.10	4468	22	28	1221	-19	-6	multi-exon	FALSE	canonical	3	307	junction_21	99.9950565671548	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGAAAACTCTGGCCTT	NA	False	NA	-11	True	NA	NA	NA	34757626	34732888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ENSMUSG00000003778.15_28	chr18	-	3001	21	FSM	ENSMUSG00000003778.15	ENSMUST00000097626.10	3005	21	27	-23	-20	-6	multi-exon	FALSE	canonical	3	148	junction_13	121.034540524596	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGAAAACTCTGGCCTT	NA	False	NA	-11	True	NA	NA	NA	34757627	34732888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ENSMUSG00000003778.15_35	chr18	-	4396	21	NIC	ENSMUSG00000003778.15	novel	4468	22	NA	NA	-19	-6	intron_retention	FALSE	canonical	3	307	junction_20	95.4622438454073	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGAAAACTCTGGCCTT	NA	False	NA	-11	True	NA	NA	NA	34757626	34732888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ENSMUSG00000003779.17_1	chr18	+	2961	19	FSM	ENSMUSG00000003779.17	ENSMUST00000237407.2	3674	19	239	474	-33	-1	multi-exon	TRUE	canonical	3	938	junction_13	99.0044268869321	2065	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGGATTCCAAATTTAG	6216	False	NA	21	True	AATAAA	-18	NA	34758026	34765856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
ENSMUSG00000003808.19_1	chr8	+	1807	13	FSM	ENSMUSG00000003808.19	ENSMUST00000003906.13	1826	13	15	4	-5	-3	multi-exon	FALSE	canonical	3	551	junction_9	56.0676055212713	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACTCTGTTGTCATTCAT	NA	False	NA	34	True	AATAAA	-34	NA	85583632	85595882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
ENSMUSG00000003808.19_17	chr8	+	1717	13	FSM	ENSMUSG00000003808.19	ENSMUST00000156970.8	1708	13	-11	2	0	-2	multi-exon	FALSE	canonical	3	23	junction_2	180.621996322584	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTCTGTTGTCATTCATT	NA	False	NA	35	True	AATAAA	-35	NA	85583637	85595883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85583811_85587534_85587587_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
ENSMUSG00000003809.15_0	chr8	-	1780	12	FSM	ENSMUSG00000003809.15	ENSMUST00000109745.8	2114	12	139	195	135	-195	multi-exon	FALSE	canonical	3	204	junction_11	27.3803935401452	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCTAGGACTGGACTAGG	NA	False	NA	-14	True	AATAAA	-14	NA	85620411	85613216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183_85620314_85620370
ENSMUSG00000003809.15_1	chr8	-	1810	11	FSM	ENSMUSG00000003809.15	ENSMUST00000003907.14	2167	11	162	195	162	-195	multi-exon	FALSE	canonical	3	233	junction_6	21.1293634546808	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCTAGGACTGGACTAGG	NA	False	NA	-14	True	AATAAA	-14	NA	85620384	85613216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183
ENSMUSG00000003810.14_0	chr4	-	5735	29	FSM	ENSMUSG00000003810.14	ENSMUST00000106485.8	5705	29	-35	5	-35	-5	multi-exon	FALSE	canonical	3	226	junction_2	30.4319246978617	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATCTTGGCCTGTGTT	8452	False	NA	-8	True	AATACA	-10	NA	116321415	116163964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116165535_116165843_116166038_116166121_116166259_116166700_116166824_116167012_116167240_116167653_116167849_116167944_116168220_116168410_116168566_116168875_116168986_116169124_116169248_116169487_116169590_116170049_116170216_116170889_116171023_116172003_116172143_116173019_116173229_116173659_116173746_116174173_116174236_116174905_116175039_116176955_116177058_116179460_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116194618_116194695_116210169_116210262_116248799_116248832_116287602_116287746_116292640_116292789_116320932
ENSMUSG00000003810.14_3	chr4	-	5732	29	NIC	ENSMUSG00000003810.14	novel	5723	30	NA	NA	-35	-5	combination_of_known_junctions	FALSE	canonical	3	89	junction_1	46.5144672469255	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATCTTGGCCTGTGTT	8452	False	NA	-8	True	AATACA	-10	NA	116321415	116163964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_116165532_116165843_116166038_116166121_116166259_116166700_116166824_116167012_116167240_116167653_116167849_116167944_116168220_116168410_116168566_116168875_116168986_116169124_116169248_116169487_116169590_116170049_116170216_116170889_116171023_116172003_116172143_116173019_116173229_116173659_116173746_116174173_116174236_116174905_116175039_116176955_116177058_116179460_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116194618_116194695_116210169_116210262_116248799_116248832_116287602_116287746_116292640_116292789_116320932
ENSMUSG00000003810.14_88	chr4	-	2385	10	ISM	ENSMUSG00000003810.14	ENSMUST00000106485.8	5705	29	-28	14603	-28	1068	5prime_fragment	FALSE	canonical	3	250	junction_7	35.0442401177725	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTCTCTGGGAGG	8459	False	NA	NA	False	NA	NA	NA	116321408	116178562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116194618_116194695_116210169_116210262_116248799_116248832_116287602_116287746_116292640_116292789_116320932
ENSMUSG00000003812.14_19	chr8	+	494	2	NNC	ENSMUSG00000003812.14	novel	1118	3	NA	NA	-15	-210	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGGTCTGTTGGGGCT	NA	False	NA	NA	False	NA	NA	NA	85640004	85640940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_85640158_85640599
ENSMUSG00000003812.14_2	chr8	+	1577	6	FSM	ENSMUSG00000003812.14	ENSMUST00000003910.13	1715	6	130	8	0	0	multi-exon	FALSE	canonical	3	65	junction_4	11.7711511756497	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGACTAGTTTTGACTTGA	NA	False	NA	10	True	NA	NA	NA	85635318	85638090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314
ENSMUSG00000003812.14_20	chr8	+	2669	2	ISM	ENSMUSG00000003812.14	ENSMUST00000148573.2	1118	3	-13	4	-13	-4	intron_retention	FALSE	canonical	3	99	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGACACATATAGAGTGGG	NA	False	NA	0	True	AATAAA	-12	NA	85640006	85649540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_85640158_85647022
ENSMUSG00000003812.14_21	chr8	+	1131	3	FSM	ENSMUSG00000003812.14	ENSMUST00000148573.2	1118	3	-16	3	-16	-3	multi-exon	FALSE	canonical	3	99	junction_1	1.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACACATATAGAGTGGGG	NA	False	NA	1	True	AATAAA	-13	NA	85640003	85649541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85640158_85647022_85647134_85648675
ENSMUSG00000003812.14_23	chr8	+	400	2	ISM	ENSMUSG00000003812.14	ENSMUST00000128400.2	4073	7	4657	211	-13	-211	3prime_fragment	FALSE	canonical	3	74	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAACTGGTCTGTTGGGGC	NA	False	NA	NA	False	NA	NA	NA	85640006	85640939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_85640158_85640690
ENSMUSG00000003812.14_5	chr8	+	1427	7	NNC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	34.0864912962436	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGAGACTAGTTTTGAC	NA	False	NA	6	True	NA	NA	NA	85635320	85638086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637821_85637964
ENSMUSG00000003813.16_2	chr8	-	1792	9	FSM	ENSMUSG00000003813.16	ENSMUST00000003911.13	2074	9	-8	290	-8	-31	multi-exon	FALSE	canonical	3	805	junction_3	189.238440862315	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGAGCCCTAATAATG	NA	False	NA	-45	True	AATAAA	-6	NA	85567278	85561570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85562304_85562383_85562549_85564088_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ENSMUSG00000003813.16_6	chr8	-	1794	9	FSM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	17	31	-7	-31	multi-exon	TRUE	canonical	3	614	junction_3	246.139156525328	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGAGCCCTAATAATG	NA	False	NA	-45	True	AATAAA	-6	NA	85567277	85561570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ENSMUSG00000003814.9_0	chr8	-	1875	9	FSM	ENSMUSG00000003814.9	ENSMUST00000003912.7	2184	9	68	241	-36	-241	multi-exon	FALSE	canonical	3	1093	junction_6	113.438791314964	1286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	-4	True	ATTAAA	-18	NA	85573495	85568719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
ENSMUSG00000003814.9_4	chr8	-	1505	7	ISM	ENSMUSG00000003814.9	ENSMUST00000003912.7	2184	9	976	243	868	-243	3prime_fragment	FALSE	canonical	3	1093	junction_6	105.647868990445	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTATTGTGTCTCCTTCT	NA	False	NA	-6	True	ATTAAA	-16	NA	85572587	85568721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490
ENSMUSG00000003814.9_6	chr8	-	1215	5	FSM	ENSMUSG00000003814.9	ENSMUST00000154774.2	943	5	233	-505	233	-241	multi-exon	FALSE	canonical	3	1284	junction_2	56.0908860689506	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	-4	True	ATTAAA	-18	NA	85571312	85568719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202
ENSMUSG00000003824.13_0	chr8	+	754	5	FSM	ENSMUSG00000003824.13	ENSMUST00000136026.8	1686	5	106	826	24	-51	multi-exon	FALSE	canonical	3	1047	junction_2	374.154045815357	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGTCATACTTTATTC	NA	False	NA	30	True	ATTAAA	-13	NA	85598845	85614024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85598883_85599348_85599462_85610059_85610214_85612563_85612753_85613763
ENSMUSG00000003824.13_1	chr8	+	601	4	FSM	ENSMUSG00000003824.13	ENSMUST00000003922.6	685	4	23	61	23	-51	multi-exon	FALSE	canonical	3	832	junction_2	470.355184940062	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGTCATACTTTATTC	NA	False	NA	30	True	ATTAAA	-13	NA	85598844	85614024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85598883_85599348_85599462_85612563_85612753_85613763
ENSMUSG00000003824.13_10	chr8	+	1200	4	NIC	ENSMUSG00000003824.13	novel	929	5	NA	NA	44	-51	intron_retention	FALSE	canonical	3	1047	junction_1	431.92772029074	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGTCATACTTTATTC	NA	False	NA	30	True	ATTAAA	-13	NA	85598865	85614024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85599462_85610059_85610214_85612563_85612753_85613763
ENSMUSG00000003824.13_2	chr8	+	774	5	FSM	ENSMUSG00000003824.13	ENSMUST00000170296.2	929	5	104	51	22	-51	multi-exon	FALSE	canonical	3	66	junction_1	678.634428466461	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGTCATACTTTATTC	NA	False	NA	30	True	ATTAAA	-13	NA	85598843	85614024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85598883_85599330_85599462_85610059_85610214_85612563_85612753_85613763
ENSMUSG00000003824.13_3	chr8	+	1050	3	NIC	ENSMUSG00000003824.13	novel	685	4	NA	NA	40	-51	intron_retention	FALSE	canonical	3	832	junction_1	576	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGTCATACTTTATTC	NA	False	NA	30	True	ATTAAA	-13	NA	85598861	85614024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85599462_85612563_85612753_85613763
ENSMUSG00000003847.17_0	chr8	+	4517	3	FSM	ENSMUSG00000003847.17	ENSMUST00000151582.2	5152	3	39	596	0	-596	multi-exon	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108020140	108055343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_108020531_108022212_108022267_108051270
ENSMUSG00000003847.17_1	chr8	+	8396	16	FSM	ENSMUSG00000003847.17	ENSMUST00000133026.8	13443	16	2	5045	2	942	multi-exon	FALSE	canonical	0	0	junction_11	1.62754074876449	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCTTTGTTACATTTGG	NA	False	NA	NA	False	AATAAA	-16	NA	108020103	108101104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_108020531_108022212_108022267_108051270_108051397_108064926_108064989_108065440_108066000_108071417_108071611_108074298_108074490_108078058_108078232_108082146_108082282_108082401_108082455_108085265_108085399_108088375_108088457_108092810_108092960_108093680_108096184_108097049_108097292_108097789
ENSMUSG00000003847.17_13	chr8	+	4396	3	ISM	ENSMUSG00000003847.17	ENSMUST00000147588.2	5481	7	11940	11	11940	-11	3prime_fragment	FALSE	canonical	1	2	junction_1	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAGACACTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108094391	108100151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_108096184_108097049_108097292_108097789
ENSMUSG00000003847.17_2	chr8	+	7259	1	NIC	ENSMUSG00000003847.17	novel	5152	3	NA	NA	-17061	-602	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGTCTCGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108048078	108055337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_108048100_108055300
ENSMUSG00000003847.17_6	chr8	+	2625	1	ISM	ENSMUSG00000003847.17	ENSMUST00000169453.8	13380	15	83413	9	21063	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGCAGTGGGTGGCA	NA	False	NA	3	True	AATAAA	-14	NA	108103514	108106139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_108103500_108106100
ENSMUSG00000003847.17_7	chr8	+	7408	15	NIC	ENSMUSG00000003847.17	novel	13443	16	NA	NA	-20	-11	combination_of_known_junctions	TRUE	canonical	0	0	junction_11	1.64130361329658	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAGACACTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108020081	108100151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_108020531_108051270_108051397_108064926_108064989_108065440_108066000_108071417_108071611_108074298_108074490_108078058_108078232_108082146_108082282_108082401_108082455_108085265_108085399_108088378_108088457_108092810_108092960_108093680_108096184_108097049_108097292_108097789
ENSMUSG00000003848.15_0	chr8	-	1648	9	FSM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	9	1	1	-1	multi-exon	FALSE	canonical	3	419	junction_2	34.7902195307819	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTTTTTTTGTTTTATT	NA	False	NA	-4	True	AATAAA	-13	NA	108151672	108139121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
ENSMUSG00000003848.15_2	chr8	-	2389	8	NIC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	4	0	intron_retention	FALSE	canonical	3	448	junction_3	29.242825737997	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTTTTTGTTTTATTT	NA	False	NA	-3	True	AATAAA	-14	NA	108151669	108139120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_108139816_108142737_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
ENSMUSG00000003849.9_0	chr8	-	2244	5	ISM	ENSMUSG00000003849.9	ENSMUST00000003947.9	1553	6	10218	-856	10218	856	3prime_fragment	FALSE	canonical	3	131	junction_2	9.02773504263389	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTCTGGCTGGCCTTA	NA	False	NA	NA	False	NA	NA	NA	108119620	108114000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_108115757_108117676_108117779_108118753_108118868_108119272_108119404_108119479
ENSMUSG00000003849.9_1	chr8	-	1545	6	FSM	ENSMUSG00000003849.9	ENSMUST00000003947.9	1553	6	3	5	3	-5	multi-exon	FALSE	canonical	3	129	junction_5	9.8264947972306	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGATGGTGGCGCATG	NA	False	NA	-7	True	AATAAA	-13	NA	108129835	108114861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_108115757_108117676_108117779_108118753_108118868_108119272_108119404_108119479_108119645_108129697
ENSMUSG00000003849.9_2	chr8	-	967	2	ISM	ENSMUSG00000003849.9	ENSMUST00000003947.9	1553	6	12093	2	12093	-2	3prime_fragment	FALSE	canonical	3	138	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGGTGGCGCATGCCT	NA	False	NA	-4	True	AATAAA	-16	NA	108117745	108114858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_108115757_108117676
ENSMUSG00000003863.19_1	chr7	-	1746	8	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	23070	1	-2484	0	3prime_fragment	FALSE	canonical	3	8	junction_7	19.3422451897289	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAGCTTTTGTTCTTA	4502	False	NA	-3	True	NA	NA	NA	44993068	44988550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976
ENSMUSG00000003863.19_10	chr7	-	1618	7	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	24249	1	-1305	0	3prime_fragment	FALSE	canonical	3	29	junction_6	11.9536140513607	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAGCTTTTGTTCTTA	5681	False	NA	-3	True	NA	NA	NA	44991889	44988550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749
ENSMUSG00000003863.19_12	chr7	-	1795	8	NIC	ENSMUSG00000003863.19	novel	4647	30	NA	NA	-2495	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	24.4156189554881	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAGCTTTTGTTCTTA	4491	False	NA	-3	True	NA	NA	NA	44993079	44988550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44989480_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976
ENSMUSG00000003863.19_15	chr7	-	3322	19	NIC	ENSMUSG00000003863.19	novel	4647	30	NA	NA	4718	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_12	19.3645979643521	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAGCTTTTGTTCTTA	9524	False	NA	-3	True	NA	NA	NA	45004819	44988550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44993164_44993228_44996155_44996357_44996847_44996930_44997151_44997246_44997665_44997794_44997885_44998050_44999492_44999716_45001510_45001699_45002942_45003088_45004120_45004201_45004290_45004354_45004582
ENSMUSG00000003863.19_16	chr7	-	3759	24	NIC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	1220	2	combination_of_known_junctions	FALSE	canonical	1	3	junction_20	19.6523662937871	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTCTGGTGGTGACCA	8968	False	NA	-6	True	NA	NA	NA	45008317	44988702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44993164_44993228_44996155_44996357_44996847_44996930_44997151_44997246_44997665_44997794_44997885_44998050_44999492_44999716_45001510_45001699_45002942_45003088_45004120_45004201_45004290_45004354_45004582_45004715_45005561_45005646_45005733_45005869_45005964_45006112_45007182_45007405_45008211
ENSMUSG00000003863.19_18	chr7	-	3313	20	NIC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	3877	-3	combination_of_known_junctions	FALSE	canonical	2	5	junction_19	19.5418437336321	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTCCTAGCTTTTGTTC	8683	False	NA	-6	True	NA	NA	NA	45005660	44988553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44993164_44993228_44996155_44996357_44996847_44996930_44997151_44997246_44997665_44997794_44997885_44998050_44999492_44999716_45001510_45001699_45002942_45003088_45004120_45004201_45004290_45004354_45004582_45004715_45005561
ENSMUSG00000003863.19_19	chr7	-	4516	29	NIC	ENSMUSG00000003863.19	novel	4647	30	NA	NA	-48	2	combination_of_known_junctions	FALSE	canonical	1	2	junction_26	19.3418165472362	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTCTGGTGGTGACCA	-13	True	NA	-6	True	NA	NA	NA	45016273	44988702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44993164_44993228_44996155_44996357_44996847_44996930_44997151_44997246_44997665_44997794_44997885_44998050_44999492_44999716_45001510_45001699_45002942_45003088_45004120_45004201_45004290_45004354_45004582_45004715_45005561_45005646_45005733_45005869_45005964_45006112_45007182_45007405_45008211_45008287_45008690_45008766_45009483_45009649_45009959_45010062_45010988_45011244_45016082
ENSMUSG00000003863.19_22	chr7	-	293	1	ISM	ENSMUSG00000003863.19	ENSMUST00000210479.2	4575	29	22401	7	1341	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTCCTAGCTTTTGTTCT	8725	False	NA	-5	True	NA	NA	NA	44988845	44988552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44988600_44988800
ENSMUSG00000003863.19_27	chr7	-	1292	4	ISM	ENSMUSG00000003863.19	ENSMUST00000210248.2	3899	26	4719	13476	4719	11305	internal_fragment	FALSE	canonical	3	20	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9525	False	NA	NA	False	NA	NA	NA	45004818	45002174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45003088_45004120_45004201_45004290_45004354_45004582
ENSMUSG00000003863.19_3	chr7	-	1369	5	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	25481	1	-73	0	3prime_fragment	FALSE	canonical	3	52	junction_1	6.04152298679729	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAGCTTTTGTTCTTA	6913	False	NA	-3	True	NA	NA	NA	44990657	44988550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492
ENSMUSG00000003863.19_4	chr7	-	1149	3	ISM	ENSMUSG00000003863.19	ENSMUST00000211098.2	1467	4	400	0	2	0	3prime_fragment	FALSE	canonical	3	52	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAGCTTTTGTTCTTA	7386	False	NA	-3	True	NA	NA	NA	44990184	44988550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44989442_44989612_44989685_44989998
ENSMUSG00000003863.19_6	chr7	-	2284	13	NIC	ENSMUSG00000003863.19	novel	4647	30	NA	NA	-7363	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_12	21.9955803641449	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAGCTTTTGTTCTTA	NA	False	NA	-3	True	NA	NA	NA	44997947	44988550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44993164_44993228_44996155_44996357_44996847_44996930_44997151_44997246_44997665_44997794_44997885
ENSMUSG00000003863.19_9	chr7	-	1574	7	NNC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	-1064	-1	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	15.0711276581711	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCCTAGCTTTTGTTCTT	5922	False	NA	-4	True	NA	NA	NA	44991648	44988551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991551
ENSMUSG00000003865.17_0	chr7	+	3636	16	FSM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	40	2	7	-2	multi-exon	TRUE	canonical	3	89	junction_1	61.1041369757855	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGGCTGGACATAAGC	1067	False	NA	23	True	AATACA	-19	NA	45084307	45106041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45084595_45085955_45086138_45087525_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
ENSMUSG00000003865.17_19	chr7	+	3251	14	ISM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	3168	8	3135	-8	3prime_fragment	FALSE	canonical	3	93	junction_6	62.4571805982629	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCAACTGTGGCTGGAC	4195	False	NA	17	True	AATACA	-13	NA	45087435	45106035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
ENSMUSG00000003865.17_21	chr7	+	3094	13	ISM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	4516	2	4483	-2	3prime_fragment	FALSE	canonical	3	93	junction_5	63.720036531342	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGGCTGGACATAAGC	5543	False	NA	23	True	AATACA	-19	NA	45088783	45106041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
ENSMUSG00000003865.17_30	chr7	+	2214	7	NIC	ENSMUSG00000003865.17	novel	480	5	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	83.740505266103	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGGCTGGACATAAGC	NA	False	NA	23	True	AATACA	-19	NA	45097022	45106041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45097078_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
ENSMUSG00000003865.17_34	chr7	+	2156	6	ISM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	13057	2	170	-2	3prime_fragment	FALSE	canonical	3	219	junction_3	11.2605506082074	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGGCTGGACATAAGC	NA	False	NA	23	True	AATACA	-19	NA	45097324	45106041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
ENSMUSG00000003868.15_0	chr7	-	1494	15	FSM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	340	0	-6	0	multi-exon	FALSE	canonical	3	1951	junction_14	206.139144605714	1904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	-19	True	NA	-4	True	TATAAA	-15	NA	45083707	45071321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
ENSMUSG00000003868.15_15	chr7	-	1463	14	ISM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	3248	0	-2	0	3prime_fragment	FALSE	canonical	3	2260	junction_4	167.734751156587	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	2889	False	NA	-4	True	TATAAA	-15	NA	45080799	45071321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743
ENSMUSG00000003872.10_0	chr7	-	1389	5	NIC	ENSMUSG00000003872.10	novel	735	6	NA	NA	18	-1	intron_retention	FALSE	canonical	2	8	junction_1	1.22474487139159	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGAGTGTCTTGTGTGTCT	7960	False	NA	0	True	TTTAAA	-15	NA	45019989	45017315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_45017423_45017727_45018775_45019338_45019411_45019550_45019670_45019945
ENSMUSG00000003873.12_0	chr7	-	774	6	FSM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	21	6	16	-6	multi-exon	FALSE	canonical	3	256	junction_1	1143.13684220219	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTGTATGGTCCCTTGTC	9998	False	NA	-8	True	AATAAA	-16	NA	45116239	45111126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
ENSMUSG00000003873.12_1	chr7	-	779	6	FSM	ENSMUSG00000003873.12	ENSMUST00000033093.10	867	6	83	5	16	-5	multi-exon	FALSE	canonical	3	2296	junction_5	352.488638114762	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTATGGTCCCTTGTCC	9998	False	NA	-7	True	AATAAA	-17	NA	45116239	45111125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
ENSMUSG00000003873.12_2	chr7	-	1234	5	FSM	ENSMUSG00000003873.12	ENSMUST00000210392.2	1100	5	31	-165	-22	-5	multi-exon	FALSE	canonical	3	3046	junction_1	70.515955641259	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTATGGTCCCTTGTCC	10013	False	NA	-7	True	AATAAA	-17	NA	45116224	45111125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45115643
ENSMUSG00000003873.12_5	chr7	-	726	5	NIC	ENSMUSG00000003873.12	novel	867	6	NA	NA	17	-5	combination_of_known_splicesites	FALSE	canonical	3	105	junction_4	1322.49735349452	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTATGGTCCCTTGTCC	9999	False	NA	-7	True	AATAAA	-17	NA	45116238	45111125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45116165
ENSMUSG00000003923.15_0	chr10	-	1467	7	FSM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	225	2475	225	507	multi-exon	FALSE	canonical	3	350	junction_5	32.9212022191711	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATGTTTCTGAAATTAT	NA	False	NA	-13	True	AATAAA	-15	NA	71073885	71063768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073669
ENSMUSG00000003923.15_1	chr10	-	2780	1	ISM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	10024	13	7065	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAGAATTTGAAACCTG	5752	False	NA	NA	False	ATTAAA	-5	NA	71064086	71061306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_71061300_71064100
ENSMUSG00000003923.15_3	chr10	-	3010	7	FSM	ENSMUSG00000003923.15	ENSMUST00000121685.8	899	7	-6	-2105	-6	-943	multi-exon	FALSE	canonical	1	9	junction_6	143.827056641726	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAATCTGCTTTCCATGT	NA	False	NA	NA	False	AAAACA	-16	NA	71073514	71062236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073287
ENSMUSG00000003929.12_0	chr17	-	2713	1	ISM	ENSMUSG00000003929.12	ENSMUST00000054072.9	6639	4	26818	6	26808	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAATTCTGTTGGTTGCT	NA	False	NA	NA	False	NA	NA	NA	33551034	33548321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_33548300_33551000
ENSMUSG00000003929.12_2	chr17	-	3464	4	FSM	ENSMUSG00000003929.12	ENSMUST00000054072.9	6639	4	15	3160	5	1871	multi-exon	FALSE	canonical	3	29	junction_3	5.43650214343336	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTACTTGTTTTAAATG	NA	False	NA	NA	False	ATTAAA	-17	NA	33577837	33551475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33577707
ENSMUSG00000003929.12_3	chr17	-	439	1	ISM	ENSMUSG00000003929.12	ENSMUST00000054072.9	6639	4	26475	2623	26465	2408	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATGTGTATTTTGTAC	NA	False	NA	-4	True	TATAAA	-17	NA	33551377	33550938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_33550900_33551400
ENSMUSG00000003929.12_4	chr17	-	4590	3	ISM	ENSMUSG00000003929.12	ENSMUST00000054072.9	6639	4	22073	1861	22063	-1861	3prime_fragment	FALSE	canonical	3	30	junction_1	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGTCTGTAAATGTC	NA	False	NA	NA	False	AATAAA	-20	NA	33555779	33550176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_33554628_33555428_33555484_33555695
ENSMUSG00000003929.12_5	chr17	-	3608	5	FSM	ENSMUSG00000003929.12	ENSMUST00000235063.2	812	5	11	-2807	11	1870	multi-exon	FALSE	canonical	2	6	junction_3	15.2540978100968	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGGTACTTGTTTTAAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	33577831	33551476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33557074_33557226_33577707
ENSMUSG00000003929.12_7	chr17	-	1041	1	ISM	ENSMUSG00000003929.12	ENSMUST00000054072.9	6639	4	25335	3161	25325	1870	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGGTACTTGTTTTAAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	33552517	33551476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_33551500_33552500
ENSMUSG00000003929.12_8	chr17	-	4291	7	Fusion	ENSMUSG00000003929.12_ENSMUSG00000055240.18	novel	812	5	NA	NA	13	2399	multi-exon	FALSE	canonical	2	3	junction_4	18.1421853393931	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACATCAAACCATGTGT	NA	False	NA	-13	True	TATAAA	-8	NA	33613566	33550947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_-_33554628_33555428_33555484_33555695_33555823_33557074_33557226_33605395_33605442_33605658_33605786_33613461
ENSMUSG00000003929.12_9	chr17	-	3611	6	Fusion	ENSMUSG00000003929.12_ENSMUSG00000055240.18	novel	812	5	NA	NA	14	1871	multi-exon	FALSE	canonical	0	0	junction_3	17.5430898076707	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTACTTGTTTTAAATG	NA	False	NA	NA	False	ATTAAA	-17	NA	33613565	33551475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_-_33554628_33555428_33555484_33555695_33555823_33605395_33605442_33605658_33605786_33613461
ENSMUSG00000003934.6_0	chr11	-	3142	5	FSM	ENSMUSG00000003934.6	ENSMUST00000004036.6	3183	5	9	32	9	-32	multi-exon	FALSE	canonical	3	7	junction_4	2.17944947177034	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAAAAAAAC	NA	False	NA	-31	True	NA	NA	NA	69451022	69444949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69447096_69447518_69447624_69447731_69447825_69448025_69448319_69450517
ENSMUSG00000003934.6_1	chr11	-	1563	1	ISM	ENSMUSG00000003934.6	ENSMUST00000004036.6	3183	5	4519	32	4519	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAAAAAAAC	NA	False	NA	-31	True	NA	NA	NA	69446512	69444949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69444900_69446500
ENSMUSG00000003934.6_3	chr11	-	3366	4	ISM	ENSMUSG00000003934.6	ENSMUST00000004036.6	3183	5	2015	1	2015	-1	3prime_fragment	FALSE	canonical	3	9	junction_2	1.88561808316413	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAGAAGGCTGGAAAATGA	NA	False	NA	0	True	TTTAAA	-6	NA	69449016	69444918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69447096_69447518_69447624_69447731_69447825_69448025
ENSMUSG00000003948.18_0	chr11	+	2677	7	FSM	ENSMUSG00000003948.18	ENSMUST00000004050.7	2677	7	-18	18	2	-18	multi-exon	FALSE	canonical	3	72	junction_6	11.2249721603218	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCCATTGTCTGGAGCAT	NA	False	NA	11	True	AATAAA	-16	NA	90140283	90169397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_90140562_90148345_90148428_90150652_90150814_90155328_90155404_90156870_90156973_90158337_90158408_90167488
ENSMUSG00000003948.18_5	chr11	+	1656	1	ISM	ENSMUSG00000003948.18	ENSMUST00000004050.7	2677	7	27441	17	27441	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCATTGTCTGGAGCATA	NA	False	NA	12	True	AATAAA	-17	NA	90167742	90169398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_90167700_90169400
ENSMUSG00000003949.17_0	chr11	-	3217	4	FSM	ENSMUSG00000003949.17	ENSMUST00000004051.8	5642	4	-24	2449	-24	5	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGGCTTGCTGTGACGA	NA	False	NA	NA	False	ATTAAA	-14	NA	90281745	90229810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_90231801_90236583_90236805_90278611_90278948_90281075
ENSMUSG00000003949.17_2	chr11	-	3373	1	ISM	ENSMUSG00000003949.17	ENSMUST00000004051.8	5642	4	50987	0	42027	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGTATTTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-17	NA	90230734	90227361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_90227400_90230700
ENSMUSG00000003955.9_2	chr16	-	670	5	FSM	ENSMUSG00000003955.9	ENSMUST00000004057.9	718	5	-43	91	36	-5	multi-exon	FALSE	canonical	3	971	junction_1	40.7982842776507	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAATGACTTGTCTTTGT	NA	False	NA	-11	True	AATACA	-8	NA	35891928	35864221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891839
ENSMUSG00000003970.10_0	chr15	+	836	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	7	8	7	-8	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	2844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	26	True	AATAAA	-10	NA	76788284	76790506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
ENSMUSG00000003970.10_5	chr15	+	814	5	FSM	ENSMUSG00000003970.10	ENSMUST00000229183.2	1020	5	198	8	-3	-8	multi-exon	FALSE	canonical	3	10804	junction_2	302.309754225695	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	26	True	AATAAA	-10	NA	76788499	76790506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
ENSMUSG00000003992.16_2	chr13	+	1600	16	FSM	ENSMUSG00000003992.16	ENSMUST00000042122.15	1633	16	32	1	-4	-1	multi-exon	TRUE	canonical	3	11	junction_4	12.5973542195706	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTTTCATTCACTGTGT	2794	False	NA	-7	True	AATAAA	-13	NA	91609241	91849354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
ENSMUSG00000003992.16_3	chr13	+	5225	16	NIC	ENSMUSG00000003992.16	novel	3957	17	NA	NA	-3	5	intron_retention	FALSE	canonical	3	38	junction_12	7.22833928982923	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTCACTGTGTCTGAAG	2795	False	NA	-1	True	AATAAA	-19	NA	91609242	91849360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91790420_91790511_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
ENSMUSG00000003992.16_5	chr13	+	1686	17	FSM	ENSMUSG00000003992.16	ENSMUST00000004094.15	3957	17	84	2187	7	6	multi-exon	FALSE	canonical	3	38	junction_13	7.3396930283221	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTCACTGTGTCTGAAGC	2805	False	NA	0	True	AATAAA	-20	NA	91609252	91849361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91790420_91790511_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
ENSMUSG00000004018.10_0	chr11	+	1209	14	FSM	ENSMUSG00000004018.10	ENSMUST00000004120.9	2724	14	1067	448	0	-2	multi-exon	FALSE	canonical	3	204	junction_1	21.2544461064019	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTATTTGATGACTTCAG	NA	False	NA	10	True	AATAAA	-17	NA	26337201	26421428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000004018.10_1	chr11	+	1277	14	NIC	ENSMUSG00000004018.10	novel	2724	14	NA	NA	-23	-18	combination_of_known_junctions	FALSE	canonical	2	6	junction_12	67.663367939726	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAACAAAAGCAA	NA	False	NA	-15	True	NA	NA	NA	26337178	26421403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420806_26420949_26421324
ENSMUSG00000004018.10_8	chr11	+	1579	13	NIC	ENSMUSG00000004018.10	novel	2724	14	NA	NA	0	-21	combination_of_known_junctions	TRUE	canonical	2	2	junction_3	71.9477047738302	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAACAACATACCAAG	NA	False	NA	-8	True	NA	NA	NA	26337201	26421855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_26337311_26347745_26347805_26349648_26349710_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000004032.11_0	chr3	+	917	8	FSM	ENSMUSG00000004032.11	ENSMUST00000004134.11	945	8	25	3	0	-3	multi-exon	FALSE	canonical	3	47	junction_1	3.52252228741084	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGGTGTCTAGATGGAT	NA	False	NA	8	True	AATAAA	-13	NA	107803161	107805999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_107803315_107803613_107803690_107803941_107804007_107804603_107804686_107804777_107804879_107805282_107805379_107805481_107805593_107805766
ENSMUSG00000004035.13_0	chr3	-	1275	8	FSM	ENSMUSG00000004035.13	ENSMUST00000004137.11	1377	8	101	1	-49	-1	multi-exon	FALSE	canonical	1	5	junction_6	2.49897938350513	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTTTTTCTTTGGTCG	NA	False	NA	-8	True	NA	NA	NA	107839032	107833650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107834297_107836185_107836297_107836378_107836475_107837589_107837691_107837788_107837871_107838143_107838209_107838630_107838707_107838934
ENSMUSG00000004038.10_1	chr3	-	1187	8	FSM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	117	7	117	-7	multi-exon	FALSE	canonical	3	154	junction_5	50.6947648547014	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGAGTTGTGTCTTTTT	NA	False	NA	-7	True	AATAAA	-41	NA	107876482	107871018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
ENSMUSG00000004038.10_14	chr3	-	1236	7	ISM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	334	7	334	-7	3prime_fragment	FALSE	canonical	3	154	junction_5	54.6547243053049	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGAGTTGTGTCTTTTT	NA	False	NA	-7	True	AATAAA	-41	NA	107876265	107871018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078
ENSMUSG00000004038.10_2	chr3	-	1185	9	Fusion	ENSMUSG00000004038.10_ENSMUSG00000058135.13	novel	1311	8	NA	NA	7	-7	multi-exon	TRUE	non_canonical	0	0	junction_8	87.243552770391	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGAGTTGTGTCTTTTT	6757	False	NA	-7	True	AATAAA	-41	NA	107925115	107871018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420_107876461_107925095
ENSMUSG00000004038.10_6	chr3	-	1107	7	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	115	-7	combination_of_known_splicesites	FALSE	canonical	3	37	junction_4	86.6033422501054	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGAGTTGTGTCTTTTT	NA	False	NA	-7	True	AATAAA	-41	NA	107876484	107871018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875451_107875517_107876078_107876155_107876420
ENSMUSG00000004040.17_0	chr11	-	4386	24	FSM	ENSMUSG00000004040.17	ENSMUST00000092671.12	2927	24	-41	-1418	-17	-8	multi-exon	FALSE	canonical	3	73	junction_3	102.661666503989	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGTCTGGCAGTGGGGG	NA	False	NA	-12	True	AATAAA	-11	NA	100830247	100777643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100779587_100780303_100780417_100780711_100780755_100783902_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
ENSMUSG00000004040.17_1	chr11	-	4356	24	FSM	ENSMUSG00000004040.17	ENSMUST00000103114.8	6042	24	-33	1719	-33	-7	multi-exon	FALSE	canonical	3	67	junction_2	102.13864331127	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTCTGGCAGTGGGGGC	NA	False	NA	-11	True	AATAAA	-12	NA	100830263	100777642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100779587_100780303_100780367_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
ENSMUSG00000004040.17_2	chr11	-	4334	24	NIC	ENSMUSG00000004040.17	novel	6042	24	NA	NA	-14	-7	combination_of_known_junctions	FALSE	canonical	3	67	junction_2	132.710523982853	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTCTGGCAGTGGGGGC	NA	False	NA	-11	True	AATAAA	-12	NA	100830244	100777642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_100779587_100780303_100780367_100780711_100780755_100783902_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
ENSMUSG00000004040.17_3	chr11	-	4408	24	FSM	ENSMUSG00000004040.17	ENSMUST00000127638.8	4516	24	101	7	-35	-7	multi-exon	FALSE	canonical	3	387	junction_2	54.0525544164325	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTCTGGCAGTGGGGGC	NA	False	NA	-11	True	AATAAA	-12	NA	100830265	100777642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100779587_100780303_100780417_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
ENSMUSG00000004043.15_0	chr11	+	3684	19	ISM	ENSMUSG00000004043.15	ENSMUST00000107356.8	3738	20	795	7	-33	-6	3prime_fragment	FALSE	canonical	3	9	junction_8	10.9994388184574	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTACCAGTCTGCTTCC	NA	False	NA	7	True	AATAAA	-24	NA	100751276	100775988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100751403_100752153_100752292_100752546_100752704_100753956_100754047_100756156_100756332_100764828_100764960_100765164_100765317_100765748_100765905_100766308_100766489_100767602_100767691_100767767_100767891_100770104_100770198_100770436_100770644_100771102_100771198_100771293_100771425_100771855_100772012_100772563_100772616_100772887_100772993_100774659
ENSMUSG00000004043.15_10	chr11	+	1894	3	ISM	ENSMUSG00000004043.15	ENSMUST00000107357.4	3605	18	20248	0	1713	0	3prime_fragment	FALSE	canonical	3	8	junction_1	15.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGTCTGCTTCCTGGTTT	NA	False	NA	13	True	AATAAA	-30	NA	100771557	100775994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100772012_100772887_100772993_100774659
ENSMUSG00000004043.15_11	chr11	+	1735	5	NNC	ENSMUSG00000004043.15	novel	3888	20	NA	NA	1706	-6	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	11.8400802362146	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTACCAGTCTGCTTCC	NA	False	NA	7	True	AATAAA	-24	NA	100771550	100775988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_100771644_100771855_100772012_100772563_100772616_100772887_100772993_100774659
ENSMUSG00000004043.15_12	chr11	+	1678	4	NNC	ENSMUSG00000004043.15	novel	3888	20	NA	NA	1711	-6	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	13.2748718344933	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTACCAGTCTGCTTCC	NA	False	NA	7	True	AATAAA	-24	NA	100771555	100775988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_100771644_100771855_100772012_100772887_100772993_100774659
ENSMUSG00000004043.15_13	chr11	+	1664	4	ISM	ENSMUSG00000004043.15	ENSMUST00000107356.8	3738	20	21352	7	1989	-6	3prime_fragment	FALSE	canonical	3	39	junction_3	2.16024689946929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTACCAGTCTGCTTCC	NA	False	NA	7	True	AATAAA	-24	NA	100771833	100775988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100772012_100772563_100772616_100772887_100772993_100774659
ENSMUSG00000004043.15_2	chr11	+	3606	18	FSM	ENSMUSG00000004043.15	ENSMUST00000107357.4	3605	18	-7	6	-7	-6	multi-exon	FALSE	canonical	3	8	junction_16	10.1053276571729	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTACCAGTCTGCTTCC	NA	False	NA	7	True	AATAAA	-24	NA	100751302	100775988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100751403_100752153_100752292_100752546_100752704_100753956_100754047_100756156_100756332_100764828_100764960_100765164_100765317_100765748_100765905_100766308_100766489_100767602_100767691_100767767_100767891_100770104_100770198_100770436_100770644_100771102_100771198_100771293_100771425_100771855_100772012_100772887_100772993_100774659
ENSMUSG00000004043.15_7	chr11	+	2377	10	ISM	ENSMUSG00000004043.15	ENSMUST00000107356.8	3738	20	17123	7	-2240	-6	3prime_fragment	FALSE	canonical	3	15	junction_1	10.3685183531451	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTACCAGTCTGCTTCC	NA	False	NA	7	True	AATAAA	-24	NA	100767604	100775988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100767691_100767767_100767891_100770104_100770198_100770436_100770644_100771102_100771198_100771293_100771425_100771855_100772012_100772563_100772616_100772887_100772993_100774659
ENSMUSG00000004044.10_0	chr11	-	3215	2	FSM	ENSMUSG00000004044.10	ENSMUST00000060792.6	3491	2	269	7	-67	-7	multi-exon	FALSE	canonical	2	4	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGATTTGTGTGAGGTT	NA	False	NA	-6	True	AATAAA	-12	NA	100861444	100847565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100850152_100860815
ENSMUSG00000004044.10_1	chr11	-	1762	1	ISM	ENSMUSG00000004044.10	ENSMUST00000060792.6	3491	2	12386	7	12050	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGATTTGTGTGAGGTT	1424	False	NA	-6	True	AATAAA	-12	NA	100849327	100847565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100847600_100849300
ENSMUSG00000004054.10_0	chr19	+	3702	12	NNC	ENSMUSG00000004054.10	novel	2885	11	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	23.4485545555329	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTAATGTCACCTTTCT	NA	False	NA	7	True	AATAAA	-19	NA	5738764	5752890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_5738802_5739504_5739541_5739716_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ENSMUSG00000004054.10_18	chr19	+	3842	12	FSM	ENSMUSG00000004054.10	ENSMUST00000004156.10	3898	12	48	8	48	0	multi-exon	FALSE	canonical	3	4	junction_1	25.7338571721901	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAAATGTAATGTCACC	NA	False	NA	2	True	AATAAA	-14	NA	5739112	5752885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5739295_5739504_5739541_5739716_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ENSMUSG00000004054.10_2	chr19	+	2451	11	NIC	ENSMUSG00000004054.10	novel	441	3	NA	NA	3	-3	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	27.36439292219	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTAATGTCACCTTTCT	NA	False	NA	7	True	AATAAA	-19	NA	5738772	5752890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5738859_5739504_5739541_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ENSMUSG00000004054.10_3	chr19	+	3095	10	NIC	ENSMUSG00000004054.10	novel	3898	12	NA	NA	4	4	intron_retention	FALSE	canonical	3	12	junction_1	24.7206616236522	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGTAATGTCACCTTTC	NA	False	NA	6	True	AATAAA	-18	NA	5738773	5752889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5739541_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ENSMUSG00000004054.10_4	chr19	+	3751	12	NIC	ENSMUSG00000004054.10	novel	2885	11	NA	NA	3	-3	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	20.4999496068721	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTAATGTCACCTTTCT	NA	False	NA	7	True	AATAAA	-19	NA	5738772	5752890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5738859_5739504_5739541_5739716_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ENSMUSG00000004054.10_5	chr19	+	4382	11	NIC	ENSMUSG00000004054.10	novel	3898	12	NA	NA	16	3	intron_retention	FALSE	canonical	3	50	junction_1	15.6204993518133	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATGTAATGTCACCTTT	NA	False	NA	5	True	AATAAA	-17	NA	5738785	5752888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5739541_5739716_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ENSMUSG00000004054.10_8	chr19	+	3555	10	ISM	ENSMUSG00000004054.10	ENSMUST00000004156.10	3898	12	726	3	629	-3	3prime_fragment	FALSE	canonical	3	57	junction_1	13.4577528254576	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTAATGTCACCTTTCT	NA	False	NA	7	True	AATAAA	-19	NA	5739790	5752890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
ENSMUSG00000004056.16_3	chr7	+	2988	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	175	1381	-19	-3	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAGGGCCCAGTCCACA	NA	False	NA	NA	False	AATAAA	-13	NA	27291151	27338870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
ENSMUSG00000004056.16_48	chr7	+	2836	13	ISM	ENSMUSG00000004056.16	ENSMUST00000051356.12	2923	14	2764	8	-40	-3	3prime_fragment	FALSE	canonical	3	377	junction_5	57.3139502118715	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAGGGCCCAGTCCACA	NA	False	NA	NA	False	AATAAA	-13	NA	27308046	27338870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
ENSMUSG00000004056.16_66	chr7	+	556	1	ISM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	47343	1376	2842	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCCAGTCCACATTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	27338319	27338875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27338300_27338900
ENSMUSG00000004056.16_9	chr7	+	3857	13	ISM	ENSMUSG00000004056.16	ENSMUST00000167435.8	2865	15	-19	3	-19	-1	intron_retention	FALSE	canonical	3	377	junction_6	56.056704921594	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGGCCCAGTCCACATT	NA	False	NA	NA	False	AATAAA	-15	NA	27291151	27338872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516
ENSMUSG00000004069.18_1	chr16	+	2588	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	50	10	5	-10	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAAAATTGTGGTCAT	NA	False	NA	25	True	NA	NA	NA	4501983	4525549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
ENSMUSG00000004069.18_3	chr16	+	2472	11	FSM	ENSMUSG00000004069.18	ENSMUST00000115854.4	2505	11	23	10	4	-10	multi-exon	FALSE	canonical	3	681	junction_10	58.1896898084188	962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAAAATTGTGGTCAT	NA	False	NA	25	True	NA	NA	NA	4501982	4525549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
ENSMUSG00000004070.16_0	chr16	+	1193	6	FSM	ENSMUSG00000004070.16	ENSMUST00000004172.15	1730	6	41	496	41	1	multi-exon	FALSE	canonical	3	381	junction_2	14.4277510374971	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCCTCTGCCTAACAGCA	NA	False	NA	11	True	AATAAA	-12	NA	4544267	4584110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4544336_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUSG00000004070.16_6	chr16	+	1126	5	ISM	ENSMUSG00000004070.16	ENSMUST00000118885.8	1392	6	5655	-1	5564	1	3prime_fragment	FALSE	canonical	3	381	junction_1	15.6204993518133	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCCTCTGCCTAACAGCA	NA	False	NA	11	True	AATAAA	-12	NA	4580421	4584110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUSG00000004071.14_0	chr16	-	1369	1	ISM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	21781	1380	1888	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4586073	4584704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_4584700_4586100
ENSMUSG00000004071.14_1	chr16	-	2507	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	60	1386	0	-6	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCATATTTCTATTTTA	NA	False	NA	-20	True	AATAAA	-8	NA	4607794	4584710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
ENSMUSG00000004071.14_2	chr16	-	2525	6	FSM	ENSMUSG00000004071.14	ENSMUST00000118703.8	2554	6	28	1	2	-1	multi-exon	FALSE	canonical	3	30	junction_5	186.698259231306	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATTTCTATTTTAGACCA	NA	False	NA	-15	True	AATAAA	-13	NA	4608128	4584705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4608015
ENSMUSG00000004071.14_9	chr16	-	3134	5	NIC	ENSMUSG00000004071.14	novel	3953	6	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	434	junction_4	30.8139578762612	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTTCTATTTTAGACC	NA	False	NA	-16	True	AATAAA	-12	NA	4607796	4584706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_4586514_4586608_4587660_4587906_4588016_4588534_4588600_4607694
ENSMUSG00000004085.15_1	chr2	+	3232	20	FSM	ENSMUSG00000004085.15	ENSMUST00000090824.12	3334	20	95	7	4	-7	multi-exon	FALSE	canonical	2	3	junction_12	12.7949955590981	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTAATGTTGATTGTATG	3329	False	NA	NA	False	AATAAA	-15	NA	72116075	72272947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813_72219921_72228633_72228770_72240492_72240538_72242273_72242305_72242414_72242555_72246884_72246948_72248298_72248392_72263711_72263829_72265574_72265650_72268545_72268697_72271575
ENSMUSG00000004085.15_15	chr2	+	3112	19	ISM	ENSMUSG00000004085.15	ENSMUST00000090824.12	3334	20	12547	7	283	-7	3prime_fragment	FALSE	canonical	2	3	junction_11	12.9277431599594	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTAATGTTGATTGTATG	NA	False	NA	NA	False	AATAAA	-15	NA	72128527	72272947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813_72219921_72228633_72228770_72240492_72240538_72242273_72242305_72242414_72242555_72246884_72246948_72248298_72248392_72263711_72263829_72265574_72265650_72268545_72268697_72271575
ENSMUSG00000004085.15_2	chr2	+	6646	12	FSM	ENSMUSG00000004085.15	ENSMUST00000135469.8	6663	12	12	5	12	-5	multi-exon	FALSE	canonical	3	17	junction_11	6.87671841784634	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATCCCTTTGTTATGTG	3337	False	NA	NA	False	AATAAA	-11	NA	72116083	72237841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813_72219921_72228633_72228770_72232332
ENSMUSG00000004085.15_4	chr2	+	6536	11	ISM	ENSMUSG00000004085.15	ENSMUST00000135469.8	6663	12	12456	3	283	-3	3prime_fragment	FALSE	canonical	3	17	junction_10	7.21179589284112	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCCCTTTGTTATGTGTC	NA	False	NA	NA	False	AATAAA	-13	NA	72128527	72237843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813_72219921_72228633_72228770_72232332
ENSMUSG00000004085.15_6	chr2	+	3814	1	ISM	ENSMUSG00000004085.15	ENSMUST00000135469.8	6663	12	117955	6	105782	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAATCCCTTTGTTATGT	6089	False	NA	NA	False	AATAAA	-10	NA	72234026	72237840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_72234000_72237800
ENSMUSG00000004085.15_7	chr2	+	1685	4	ISM	ENSMUSG00000004085.15	ENSMUST00000090824.12	3334	20	147761	7	135497	-7	3prime_fragment	FALSE	canonical	3	10	junction_2	3.55902608401044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTAATGTTGATTGTATG	NA	False	NA	NA	False	AATAAA	-15	NA	72263741	72272947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_72263829_72265574_72265650_72268545_72268697_72271575
ENSMUSG00000004096.10_0	chr9	+	842	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	64	205	34	7	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGACTTTTTTTTTTGG	NA	False	NA	20	True	ATTAAA	-20	NA	14411976	14421668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ENSMUSG00000004096.10_2	chr9	+	817	7	FSM	ENSMUSG00000004096.10	ENSMUST00000213913.2	831	7	21	-7	21	7	multi-exon	FALSE	canonical	3	58	junction_1	320.421423891863	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGACTTTTTTTTTTGG	NA	False	NA	20	True	ATTAAA	-20	NA	14411963	14421668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_14412040_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ENSMUSG00000004098.8_2	chr9	-	6098	67	FSM	ENSMUSG00000004098.8	ENSMUST00000004201.8	6119	67	14	7	14	-7	multi-exon	TRUE	canonical	1	1	junction_62	3.84063264799209	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTCTTCTCTTTTTCTCT	1617	False	NA	-9	True	AATAAA	-14	NA	20726349	20681352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20682275_20682366_20682607_20682882_20682952_20683403_20683517_20683600_20683800_20684380_20684435_20685189_20685226_20685309_20685364_20685611_20685720_20685856_20685911_20686326_20686381_20686528_20686637_20686761_20686816_20687129_20687184_20687387_20687442_20687608_20687663_20688287_20688396_20689772_20689827_20689960_20690015_20690096_20690151_20690311_20690366_20691196_20691305_20693103_20693158_20693782_20693837_20693920_20694029_20694779_20694888_20695964_20696019_20696441_20696532_20696668_20696777_20696868_20696923_20697494_20697549_20697646_20697701_20698385_20698431_20698556_20698611_20698826_20698872_20699846_20699901_20703940_20703995_20704805_20704914_20705006_20705061_20705242_20705288_20706952_20707007_20707105_20707151_20707245_20707300_20708517_20708563_20708678_20708733_20708869_20708915_20709713_20709768_20709884_20709930_20710331_20710386_20710555_20710610_20710704_20710759_20711538_20711593_20712363_20712418_20712511_20712569_20713062_20713147_20713239_20713315_20713753_20713817_20714302_20714345_20714415_20714464_20715932_20716074_20716165_20716280_20718900_20719051_20719655_20719761_20720735_20720893_20720960_20721151_20721235_20721398_20726161
ENSMUSG00000004098.8_3	chr9	-	3413	33	ISM	ENSMUSG00000004098.8	ENSMUST00000004201.8	6119	67	27962	7	27962	-7	3prime_fragment	FALSE	canonical	2	9	junction_15	3.11184732112615	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTCTTCTCTTTTTCTCT	NA	False	NA	-9	True	AATAAA	-14	NA	20698401	20681352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20682275_20682366_20682607_20682882_20682952_20683403_20683517_20683600_20683800_20684380_20684435_20685189_20685226_20685309_20685364_20685611_20685720_20685856_20685911_20686326_20686381_20686528_20686637_20686761_20686816_20687129_20687184_20687387_20687442_20687608_20687663_20688287_20688396_20689772_20689827_20689960_20690015_20690096_20690151_20690311_20690366_20691196_20691305_20693103_20693158_20693782_20693837_20693920_20694029_20694779_20694888_20695964_20696019_20696441_20696532_20696668_20696777_20696868_20696923_20697494_20697549_20697646_20697701_20698385
ENSMUSG00000004099.17_0	chr9	-	5223	39	NIC	ENSMUSG00000004099.17	novel	5367	39	NA	NA	2	4	combination_of_known_junctions	FALSE	canonical	3	490	junction_35	108.724460496474	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACCCAGCTAGTGATTG	NA	False	NA	-12	True	AATAAA	-12	NA	20864139	20818509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851848_20852668_20852880_20852994_20853103_20853878_20853916_20864003
ENSMUSG00000004099.17_11	chr9	-	5220	39	FSM	ENSMUSG00000004099.17	ENSMUST00000004202.17	5367	39	142	5	8	4	multi-exon	TRUE	canonical	3	422	junction_35	116.269340570878	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACCCAGCTAGTGATTG	NA	False	NA	-12	True	AATAAA	-12	NA	20864133	20818509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20853878_20853916_20864003
ENSMUSG00000004100.13_1	chr9	+	1577	11	FSM	ENSMUSG00000004100.13	ENSMUST00000004203.6	1670	11	92	1	0	-1	multi-exon	FALSE	canonical	3	766	junction_9	65.2172523186925	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	12	True	AATAAA	-13	NA	20799562	20803473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
ENSMUSG00000004100.13_2	chr9	+	1658	10	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	1	-1	intron_retention	FALSE	canonical	3	766	junction_8	67.5113159239085	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	12	True	AATAAA	-13	NA	20799561	20803473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802662_20802746_20803044_20803127
ENSMUSG00000004100.13_36	chr9	+	1527	10	ISM	ENSMUSG00000004100.13	ENSMUST00000004203.6	1670	11	231	1	121	-1	3prime_fragment	FALSE	canonical	3	766	junction_8	68.2725113238786	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	12	True	AATAAA	-13	NA	20799701	20803473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
ENSMUSG00000004100.13_5	chr9	+	1769	10	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	2	-1	intron_retention	FALSE	canonical	3	766	junction_8	68.7216608258755	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	12	True	AATAAA	-13	NA	20799564	20803473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_20799614_20799702_20799874_20800633_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
ENSMUSG00000004105.9_0	chr2	+	3336	5	FSM	ENSMUSG00000004105.9	ENSMUST00000004208.7	3339	5	2	1	2	-1	multi-exon	FALSE	canonical	1	1	junction_3	1.11803398874989	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACCCACACTGTGTGCT	NA	False	NA	NA	False	AATAAA	-20	NA	33106082	33137728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_33106466_33118186_33119045_33132211_33132406_33133690_33133962_33136098
ENSMUSG00000004113.19_0	chr2	-	1177	3	ISM	ENSMUSG00000004113.19	ENSMUST00000100348.10	7182	47	154914	-14	-599	14	3prime_fragment	FALSE	canonical	2	6	junction_1	0.5	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCCTGTGTACTGCCTT	NA	False	NA	NA	False	AATAAA	-31	NA	24498145	24496372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_24497113_24497453_24497699_24497953
ENSMUSG00000004113.19_1	chr2	-	3709	2	NIC	ENSMUSG00000004113.19	novel	9655	46	NA	NA	-566	-243	intron_retention	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTTTGTCGCAAAAATTT	NA	False	NA	NA	False	TATAAA	-4	NA	24498112	24494148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_24497699_24497953
ENSMUSG00000004113.19_2	chr2	-	1316	4	ISM	ENSMUSG00000004113.19	ENSMUST00000100348.10	7182	47	153079	-14	-2434	14	3prime_fragment	FALSE	canonical	1	1	junction_3	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCCTGTGTACTGCCTT	NA	False	NA	NA	False	AATAAA	-31	NA	24499980	24496372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_24497113_24497453_24497699_24497953_24498159_24499854
ENSMUSG00000004127.13_0	chr3	+	2437	8	FSM	ENSMUSG00000004127.13	ENSMUST00000040321.13	4025	8	42	1546	21	-1543	multi-exon	FALSE	canonical	3	147	junction_7	16.9609395196067	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTTCTAAAATTCAGGT	NA	False	NA	2	True	AATAAA	-17	NA	137849250	137864036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_137849358_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
ENSMUSG00000004127.13_1	chr3	+	2432	8	NNC	ENSMUSG00000004127.13	novel	4025	8	NA	NA	21	-1543	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	65.2811814618978	117	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTTCTAAAATTCAGGT	NA	False	NA	2	True	AATAAA	-17	NA	137849250	137864036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_137849353_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
ENSMUSG00000004127.13_10	chr3	+	3843	7	ISM	ENSMUSG00000004127.13	ENSMUST00000162864.8	4064	8	2341	1547	1948	-1547	3prime_fragment	FALSE	canonical	3	147	junction_6	16.8267313786394	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTACTTTTCTAAAATTC	NA	False	NA	-2	True	AATAAA	-13	NA	137851618	137864032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
ENSMUSG00000004127.13_6	chr3	+	4853	8	NIC	ENSMUSG00000004127.13	novel	588	5	NA	NA	10	-1543	intron_retention	FALSE	canonical	3	7	junction_1	62.9051764522587	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTTCTAAAATTCAGGT	NA	False	NA	2	True	AATAAA	-17	NA	137849631	137864036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_137852155_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
ENSMUSG00000004127.13_9	chr3	+	2567	9	NIC	ENSMUSG00000004127.13	novel	588	5	NA	NA	6	-1542	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	78.3194579909744	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTCTAAAATTCAGGTT	NA	False	NA	3	True	AATAAA	-18	NA	137849627	137864037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_137849757_137852047_137852155_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
ENSMUSG00000004151.18_0	chr12	+	3155	13	FSM	ENSMUSG00000004151.18	ENSMUST00000095767.11	6576	13	209	3212	7	-27	multi-exon	FALSE	non_canonical	0	0	junction_8	7.23225798458238	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTCAAAGTTTCTGCCT	534	False	NA	NA	False	NA	NA	NA	38830289	38917271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_38830421_38830846_38830979_38831797_38831886_38833236_38833285_38843169_38843224_38877776_38877907_38881079_38881269_38885067_38885316_38902218_38902288_38904158_38904228_38906939_38907110_38911285_38911388_38915546
ENSMUSG00000004151.18_4	chr12	+	3066	12	ISM	ENSMUSG00000004151.18	ENSMUST00000162563.8	1865	14	522	-1493	-42	-27	3prime_fragment	FALSE	non_canonical	0	0	junction_7	7.20881003694509	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTCAAAGTTTCTGCCT	1049	False	NA	NA	False	NA	NA	NA	38830804	38917271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_38830979_38831797_38831886_38833236_38833285_38843169_38843224_38877776_38877907_38881079_38881269_38885067_38885316_38902218_38902288_38904158_38904228_38906939_38907110_38911285_38911388_38915546
ENSMUSG00000004187.12_11	chr15	+	3318	19	NNC	ENSMUSG00000004187.12	novel	3009	19	NA	NA	25	-4	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	4.46280927966529	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAAGGCTGTGCCTGGTGT	5035	False	NA	NA	False	ATTAAA	-14	NA	76544082	76552391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_76544330_76544907_76544966_76545205_76545288_76545435_76545585_76545679_76545819_76545926_76546073_76546145_76546212_76546300_76546430_76546794_76546873_76546981_76547097_76547173_76547284_76548270_76548380_76548481_76548646_76550228_76550334_76550428_76550551_76550646_76550771_76550862_76550993_76551074_76551332_76551403
ENSMUSG00000004187.12_20	chr15	+	1401	3	ISM	ENSMUSG00000004187.12	ENSMUST00000230124.2	3193	17	5938	4	2569	-4	3prime_fragment	FALSE	canonical	2	12	junction_1	4	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAAGGCTGTGCCTGGTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	76550836	76552391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76550993_76551074_76551332_76551403
ENSMUSG00000004187.12_9	chr15	+	3419	18	NNC	ENSMUSG00000004187.12	novel	3009	19	NA	NA	33	-4	intron_retention	FALSE	canonical	2	7	junction_1	4.29613167917887	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAAGGCTGTGCCTGGTGT	5043	False	NA	NA	False	ATTAAA	-14	NA	76544090	76552391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_76544330_76544907_76544966_76545205_76545288_76545435_76545585_76545679_76545819_76545926_76546073_76546145_76546212_76546300_76546430_76546794_76547097_76547173_76547284_76548270_76548380_76548481_76548646_76550228_76550334_76550428_76550551_76550646_76550771_76550862_76550993_76551074_76551332_76551403
ENSMUSG00000004207.15_0	chr10	+	2586	14	FSM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	60	0	59	0	multi-exon	FALSE	canonical	3	864	junction_6	81.2601199887849	1588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGATCTGGCCTTGTGTC	7049	False	NA	NA	False	AATAAA	-13	NA	60113508	60138373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ENSMUSG00000004207.15_3	chr10	+	2583	14	NNC	ENSMUSG00000004207.15	novel	2646	14	NA	NA	59	0	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_8	249.821972115103	181	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGATCTGGCCTTGTGTC	7049	False	NA	NA	False	AATAAA	-13	NA	60113508	60138373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135245_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ENSMUSG00000004221.17_15	chrX	+	4133	8	ISM	ENSMUSG00000004221.17	ENSMUST00000114127.8	3332	10	4212	-1234	4120	0	3prime_fragment	FALSE	canonical	3	103	junction_5	10.561771651014	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATGCACTCTGTCCTCC	NA	False	NA	1	True	AATAAA	-15	NA	73477488	73495126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73477621_73480769_73480889_73482512_73482666_73483480_73483557_73486950_73487095_73487377_73487521_73491464_73491527_73491822
ENSMUSG00000004221.17_21	chrX	+	2454	1	ISM	ENSMUSG00000004221.17	ENSMUST00000164101.8	6788	10	55776	2258	10180	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATGCACTCTGTCCTCC	544	False	NA	1	True	AATAAA	-15	NA	73492672	73495126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73492700_73495100
ENSMUSG00000004221.17_4	chrX	+	3296	10	FSM	ENSMUSG00000004221.17	ENSMUST00000064407.10	4530	10	0	1234	0	0	multi-exon	FALSE	canonical	3	18	junction_3	31.82591536608	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGGGGGTTTGGGCTTA	NA	False	NA	3	True	NA	NA	NA	73473309	73493892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73473428_73476410_73476613_73477408_73477621_73480772_73480889_73482512_73482666_73483480_73483557_73486950_73487095_73487377_73487521_73491464_73491527_73491822
ENSMUSG00000004221.17_5	chrX	+	3298	10	FSM	ENSMUSG00000004221.17	ENSMUST00000114127.8	3332	10	37	-3	4	3	multi-exon	FALSE	canonical	3	103	junction_7	10.8217887204986	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGGGTTTGGGCTTATAT	NA	False	NA	6	True	NA	NA	NA	73473313	73493895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73473428_73476410_73476613_73477408_73477621_73480769_73480889_73482512_73482666_73483480_73483557_73486950_73487095_73487377_73487521_73491464_73491527_73491822
ENSMUSG00000004233.15_0	chr3	+	2541	6	FSM	ENSMUSG00000004233.15	ENSMUST00000004343.7	4410	6	22	1847	-3	-847	multi-exon	FALSE	canonical	3	38	junction_2	3.66606055596467	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAACGTTGTACTGTGACT	NA	False	NA	7	True	NA	NA	NA	99048405	99125672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99121971_99122091_99123774
ENSMUSG00000004233.15_1	chr3	+	3381	2	NNC	ENSMUSG00000004233.15	novel	403	4	NA	NA	-5	-49896	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	99048403	99062947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_99048505_99059667
ENSMUSG00000004233.15_2	chr3	+	2285	5	NIC	ENSMUSG00000004233.15	novel	4410	6	NA	NA	-3	-845	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	18.1383571472171	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGTTGTACTGTGACTTA	NA	False	NA	9	True	NA	NA	NA	99048405	99125674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_99048505_99111851_99111933_99112540_99112627_99121971_99122091_99123774
ENSMUSG00000004233.15_9	chr3	+	1119	1	ISM	ENSMUSG00000004233.15	ENSMUST00000004343.7	4410	6	76289	1728	76192	-728	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTGAGTTCACCTCGA	NA	False	NA	6	True	AATAAA	-21	NA	99124672	99125791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_99124700_99125800
ENSMUSG00000004263.16_0	chr6	-	1653	5	NIC	ENSMUSG00000004263.16	novel	4433	10	NA	NA	25	-2	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	39.1431667088906	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTCTGTGACGTGTTT	9846	False	NA	-2	True	AAAACA	-19	NA	124722563	124719508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682_124722380_124722492
ENSMUSG00000004263.16_1	chr6	-	3004	6	ISM	ENSMUSG00000004263.16	ENSMUST00000088357.12	4433	10	9303	5	-1596	-5	3prime_fragment	FALSE	canonical	3	72	junction_4	10.4307238483242	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATATGTCTGTGACGTG	8997	False	NA	-5	True	AAAACA	-45	NA	124724184	124719511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682_124722380_124722601_124722825_124722982
ENSMUSG00000004263.16_14	chr6	-	4263	10	NIC	ENSMUSG00000004263.16	novel	4433	10	NA	NA	7	-5	combination_of_known_junctions	FALSE	canonical	3	13	junction_9	26.1708536400117	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATATGTCTGTGACGTG	9692	False	NA	-5	True	AAAACA	-45	NA	124733010	124719511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682_124722380_124722601_124722825_124722982_124724953_124726198_124726313_124726424_124726563_124726709_124726885_124732946
ENSMUSG00000004263.16_2	chr6	-	4638	10	FSM	ENSMUSG00000004263.16	ENSMUST00000088357.12	4433	10	-210	5	-210	-5	multi-exon	FALSE	canonical	3	30	junction_9	22.6083126851416	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATATGTCTGTGACGTG	9005	False	NA	-5	True	AAAACA	-45	NA	124733697	124719511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682_124722380_124722601_124722825_124722982_124724953_124726198_124726313_124726424_124726563_124726709_124726885_124733258
ENSMUSG00000004263.16_3	chr6	-	4406	10	NNC	ENSMUSG00000004263.16	novel	4433	10	NA	NA	19	-5	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_6	27.442869950337	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATATGTCTGTGACGTG	9234	False	NA	-5	True	AAAACA	-45	NA	124733468	124719511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682_124722380_124722601_124722825_124722982_124724950_124726198_124726313_124726424_124726563_124726709_124726885_124733258
ENSMUSG00000004263.16_5	chr6	-	1348	4	ISM	ENSMUSG00000004263.16	ENSMUST00000088357.12	4433	10	11339	5	440	-5	3prime_fragment	FALSE	canonical	3	86	junction_2	5.73488351136175	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATATGTCTGTGACGTG	7837	False	NA	-5	True	AAAACA	-45	NA	124722148	124719511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682
ENSMUSG00000004263.16_7	chr6	-	1621	5	ISM	ENSMUSG00000004263.16	ENSMUST00000088357.12	4433	10	10844	5	-55	-5	3prime_fragment	FALSE	canonical	3	72	junction_4	10.2347447452294	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATATGTCTGTGACGTG	9766	False	NA	-5	True	AAAACA	-45	NA	124722643	124719511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682_124722380_124722601
ENSMUSG00000004264.18_0	chr6	+	1323	9	NIC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	-22	-11	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	902.100985200659	1730	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCAAAAATTTTGTGTC	NA	False	NA	13	True	AATAAA	-14	NA	124689276	124693902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693568
ENSMUSG00000004264.18_2	chr6	+	1332	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	-26	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	902.100985200659	171	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCAAAAATTTTGTGTC	NA	False	NA	13	True	AATAAA	-14	NA	124689272	124693902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692999_124693568
ENSMUSG00000004266.16_0	chr6	-	2158	16	FSM	ENSMUSG00000004266.16	ENSMUST00000112484.10	2219	16	49	12	5	1	multi-exon	FALSE	canonical	3	99	junction_10	22.1017847444248	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGCCTCCAAGTCTGT	8779	False	NA	-12	True	AATAAA	-16	NA	124710068	124697681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
ENSMUSG00000004266.16_4	chr6	-	2203	16	FSM	ENSMUSG00000004266.16	ENSMUST00000171549.9	2226	16	11	12	11	1	multi-exon	FALSE	canonical	3	18	junction_15	37.1732281203676	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGCCTCCAAGTCTGT	8931	False	NA	-12	True	AATAAA	-16	NA	124715666	124697681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124715461
ENSMUSG00000004266.16_5	chr6	-	2326	15	NIC	ENSMUSG00000004266.16	novel	2219	16	NA	NA	8	1	intron_retention	FALSE	canonical	3	99	junction_9	22.8728740508695	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGCCTCCAAGTCTGT	8782	False	NA	-12	True	AATAAA	-16	NA	124710065	124697681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
ENSMUSG00000004267.17_0	chr6	-	2365	12	FSM	ENSMUSG00000004267.17	ENSMUST00000004378.15	2795	12	120	310	-3	0	multi-exon	FALSE	canonical	3	32	junction_11	8.77449346328266	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	9986	False	NA	-6	True	ATTAAA	-17	NA	124746516	124737327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
ENSMUSG00000004267.17_15	chr6	-	1330	4	FSM	ENSMUSG00000004267.17	ENSMUST00000146712.2	632	4	154	-852	118	0	multi-exon	FALSE	canonical	3	44	junction_1	8.48528137423857	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	9381	False	NA	-6	True	ATTAAA	-17	NA	124740131	124737327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967
ENSMUSG00000004267.17_19	chr6	-	2260	11	ISM	ENSMUSG00000004267.17	ENSMUST00000004378.15	2795	12	1323	311	-13	-1	3prime_fragment	FALSE	canonical	3	37	junction_5	7.92779919019144	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCACCCCTTGTCTGAGGA	8702	False	NA	-7	True	ATTAAA	-16	NA	124745313	124737328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200
ENSMUSG00000004267.17_2	chr6	-	560	1	ISM	ENSMUSG00000004267.17	ENSMUST00000147307.2	2614	2	2999	1	2673	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGGCTGAACTAAGGATT	9839	False	NA	-2	True	NA	NA	NA	124737576	124737016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124737000_124737600
ENSMUSG00000004267.17_22	chr6	-	2886	11	NIC	ENSMUSG00000004267.17	novel	2795	12	NA	NA	-4	0	intron_retention	FALSE	canonical	3	32	junction_10	8.97830719011106	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	9985	False	NA	-6	True	ATTAAA	-17	NA	124746517	124737327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
ENSMUSG00000004267.17_6	chr6	-	2030	3	FSM	ENSMUSG00000004267.17	ENSMUST00000139763.8	898	3	-330	-802	-4	9	multi-exon	FALSE	canonical	3	44	junction_1	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGAGGACTCTTACTCT	8933	False	NA	3	True	ATTAAA	-26	NA	124740579	124737318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124738326_124738610_124738670_124739615
ENSMUSG00000004267.17_7	chr6	-	2608	11	NIC	ENSMUSG00000004267.17	novel	2491	10	NA	NA	-3	0	intron_retention	FALSE	canonical	3	32	junction_10	9.17660067781093	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	9986	False	NA	-6	True	ATTAAA	-17	NA	124746516	124737327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124738326_124738610_124738670_124739615_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
ENSMUSG00000004267.17_9	chr6	-	3094	10	NIC	ENSMUSG00000004267.17	novel	2491	10	NA	NA	1	0	intron_retention	FALSE	canonical	3	32	junction_9	9.41629792788369	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	10020	False	NA	-6	True	ATTAAA	-17	NA	124746482	124737327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124738326_124738610_124738670_124739615_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
ENSMUSG00000004268.12_0	chr6	-	991	6	FSM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	42	1	5	0	multi-exon	FALSE	canonical	3	1245	junction_5	105.298433036774	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	-15	True	TATAAA	-18	NA	124689099	124681344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
ENSMUSG00000004268.12_1	chr6	-	1307	5	NIC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-12	0	intron_retention	FALSE	canonical	3	1245	junction_4	117.50957407803	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	-14	True	TATAAA	-19	NA	124689116	124681343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124681622_124681901_124682052_124682120_124682620_124682703_124682806_124688838
ENSMUSG00000004268.12_9	chr6	-	1343	4	NIC	ENSMUSG00000004268.12	novel	917	5	NA	NA	2	0	intron_retention	FALSE	canonical	3	1245	junction_3	32.2524762184584	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	-15	True	TATAAA	-18	NA	124689102	124681344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124682180_124682477_124682620_124682703_124682806_124688838
ENSMUSG00000004270.14_0	chr6	+	1930	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	102	249	-43	152	multi-exon	TRUE	canonical	3	738	junction_2	58.4776785524946	875	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCTAGCATCCCAGACTG	NA	False	NA	32	True	GATAAA	-26	NA	124640091	124681132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ENSMUSG00000004285.13_0	chr6	+	643	2	FSM	ENSMUSG00000004285.13	ENSMUST00000004396.13	703	2	57	3	57	-3	multi-exon	FALSE	canonical	3	1924	junction_1	0	441	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGGTACTGGTATGGAT	-18	True	NA	34	True	ATTAAA	-16	NA	29467773	29470508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29467974_29470065
ENSMUSG00000004317.15_0	chrX	-	3463	1	ISM	ENSMUSG00000004317.15	ENSMUST00000004428.14	8390	12	31438	4	31397	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTCAAGTCTGTTTCTG	NA	False	NA	-4	True	AATAAA	-18	NA	7023515	7020052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7020100_7023500
ENSMUSG00000004317.15_1	chrX	-	6463	3	ISM	ENSMUSG00000004317.15	ENSMUST00000004428.14	8390	12	26880	1	26839	-1	3prime_fragment	FALSE	canonical	3	53	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAGTCTGTTTCTGAAG	NA	False	NA	-1	True	AATAAA	-21	NA	7028073	7020049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7026059_7027474_7027692_7027836
ENSMUSG00000004317.15_12	chrX	-	7006	5	ISM	ENSMUSG00000004317.15	ENSMUST00000004428.14	8390	12	22935	7	22894	-7	3prime_fragment	FALSE	canonical	3	49	junction_3	2.95803989154981	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGATTCAAGTCTGTTT	9636	False	NA	-7	True	AATAAA	-15	NA	7032018	7020055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818
ENSMUSG00000004317.15_3	chrX	-	8710	14	NIC	ENSMUSG00000004317.15	novel	3052	15	NA	NA	59	-3	combination_of_known_junctions	FALSE	canonical	2	11	junction_12	15.0816319177261	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCAAGTCTGTTTCTGA	3190	False	NA	-3	True	AATAAA	-19	NA	7185538	7020051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7079102_7079250_7182897_7183063_7185344
ENSMUSG00000004317.15_4	chrX	-	3095	12	FSM	ENSMUSG00000004317.15	ENSMUST00000004428.14	8390	12	23	5272	-18	387	multi-exon	FALSE	canonical	3	32	junction_11	7.74596669241483	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGGTCTTTTGA	NA	False	NA	NA	False	AGTAAA	-20	NA	7054930	7025320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7054770
ENSMUSG00000004317.15_5	chrX	-	8773	15	NNC	ENSMUSG00000004317.15	novel	3052	15	NA	NA	-48	-9	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_13	17.5557421270835	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACTTGATTCAAGTCTGT	3208	False	NA	-9	True	AATAAA	-13	NA	7185520	7020057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7079102_7079250_7182897_7183063_7184640_7184728_7185344
ENSMUSG00000004319.16_0	chr8	-	5648	13	FSM	ENSMUSG00000004319.16	ENSMUST00000110301.2	4099	13	-26	-1523	21	-11	multi-exon	FALSE	canonical	3	96	junction_11	50.7408995672021	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAAAGTGTGGTTTGGC	NA	False	NA	-12	True	ATTAAA	-7	NA	61436299	61363433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
ENSMUSG00000004319.16_1	chr8	-	2074	1	ISM	ENSMUSG00000004319.16	ENSMUST00000056508.12	5684	12	42764	7	10491	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTGTGGTTTGGCTTTT	NA	False	NA	-8	True	ATTAAA	-11	NA	61365503	61363429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_61363400_61365500
ENSMUSG00000004319.16_16	chr8	-	5730	14	FSM	ENSMUSG00000004319.16	ENSMUST00000004430.14	4175	14	-32	-1523	15	-11	multi-exon	FALSE	canonical	3	31	junction_1	79.7742376590516	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAAAGTGTGGTTTGGC	NA	False	NA	-12	True	ATTAAA	-7	NA	61436305	61363433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_61366210_61367786_61367863_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
ENSMUSG00000004319.16_19	chr8	-	3233	3	ISM	ENSMUSG00000004319.16	ENSMUST00000056508.12	5684	12	32208	7	-65	-7	3prime_fragment	FALSE	canonical	3	202	junction_1	19	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTGTGGTTTGGCTTTT	5360	False	NA	-8	True	ATTAAA	-11	NA	61376059	61363429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_61366210_61372373_61372591_61375823
ENSMUSG00000004319.16_3	chr8	-	5541	13	NIC	ENSMUSG00000004319.16	novel	4175	14	NA	NA	-10	-7	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	80.1138079373476	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTGTGGTTTGGCTTTT	NA	False	NA	-8	True	ATTAAA	-11	NA	61436288	61363429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_61366210_61367786_61367863_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61435809
ENSMUSG00000004319.16_5	chr8	-	5480	12	FSM	ENSMUSG00000004319.16	ENSMUST00000093490.9	5518	12	29	9	15	-9	multi-exon	FALSE	canonical	3	96	junction_11	42.8184713366008	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAAAGTGTGGTTTGGCTT	NA	False	NA	-10	True	ATTAAA	-9	NA	61436305	61363431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61435809
ENSMUSG00000004328.16_0	chr7	-	6396	15	FSM	ENSMUSG00000004328.16	ENSMUST00000108492.9	6402	15	3	3	3	-3	multi-exon	TRUE	canonical	0	0	junction_10	3.50218590632322	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGACCGGTGTTGACTC	NA	False	NA	-4	True	CATAAA	-22	NA	16796349	16765434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_16769891_16771058_16771141_16773482_16773595_16774893_16775166_16776513_16776616_16778301_16778493_16778779_16778893_16782538_16782687_16782924_16783032_16784473_16784683_16785057_16785171_16785846_16785932_16788606_16788753_16790184_16790376_16796280
ENSMUSG00000004328.16_1	chr7	-	3023	1	ISM	ENSMUSG00000004328.16	ENSMUST00000108492.9	6402	15	27892	6	16128	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAGAGACCGGTGTTGA	NA	False	NA	-7	True	CATAAA	-19	NA	16768460	16765437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_16765400_16768500
ENSMUSG00000004341.9_0	chr13	+	1268	5	FSM	ENSMUSG00000004341.9	ENSMUST00000004453.9	1340	5	72	0	72	0	multi-exon	FALSE	canonical	3	9	junction_2	5.71729831301464	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGACTCTGAGTGATGT	997	False	NA	NA	False	NA	NA	NA	21496366	21503794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_21496515_21497817_21497972_21501154_21501273_21501738_21501839_21503046
ENSMUSG00000004356.9_0	chr10	-	8827	62	FSM	ENSMUSG00000004356.9	ENSMUST00000004470.9	8821	62	-8	2	-8	-2	multi-exon	TRUE	canonical	3	123	junction_48	34.745281900583	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCCTGCCTGAAAGACTA	NA	False	NA	-3	True	ATTAAA	-14	NA	88662674	88582470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_88582922_88583137_88583284_88584087_88584215_88585121_88585404_88586513_88586586_88587206_88587395_88588768_88588902_88589497_88589630_88590338_88590522_88590612_88590683_88591049_88591130_88592886_88592998_88593718_88593851_88594165_88594337_88596731_88596849_88597604_88597747_88598630_88598798_88600535_88600704_88601272_88601372_88602924_88603082_88603314_88603455_88604496_88604787_88606233_88606317_88606546_88606687_88607723_88607862_88608289_88608431_88608713_88608870_88610533_88610687_88610786_88610838_88611070_88611215_88612025_88612114_88613266_88613412_88614084_88614309_88616809_88616890_88618434_88618579_88621851_88622061_88623316_88623484_88626912_88627039_88627545_88627632_88628460_88628552_88631238_88631428_88634142_88634384_88634545_88634626_88636978_88637056_88640384_88640544_88641997_88642061_88643188_88643340_88644943_88645050_88645576_88645666_88645791_88645948_88649778_88649958_88651730_88651809_88652739_88652875_88653040_88653188_88653727_88653884_88654350_88654489_88655129_88655212_88656688_88656878_88657601_88657735_88657865_88657933_88661279_88661361_88662467
ENSMUSG00000004356.9_22	chr10	-	3445	22	ISM	ENSMUSG00000004356.9	ENSMUST00000004470.9	8821	62	57994	1	-3138	-1	3prime_fragment	FALSE	canonical	3	149	junction_17	33.7302222221625	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCTGCCTGAAAGACTAT	472	False	NA	-2	True	ATTAAA	-15	NA	88604672	88582469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_88582922_88583137_88583284_88584087_88584215_88585121_88585404_88586513_88586586_88587206_88587395_88588768_88588902_88589497_88589630_88590338_88590522_88590612_88590683_88591049_88591130_88592886_88592998_88593718_88593851_88594165_88594337_88596731_88596849_88597604_88597747_88598630_88598798_88600535_88600704_88601272_88601372_88602924_88603082_88603314_88603455_88604496
ENSMUSG00000004356.9_23	chr10	-	3077	20	ISM	ENSMUSG00000004356.9	ENSMUST00000004470.9	8821	62	59636	2	-1496	-2	3prime_fragment	FALSE	canonical	3	149	junction_17	34.0835700989864	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCCTGCCTGAAAGACTA	2114	False	NA	-3	True	ATTAAA	-14	NA	88603030	88582470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_88582922_88583137_88583284_88584087_88584215_88585121_88585404_88586513_88586586_88587206_88587395_88588768_88588902_88589497_88589630_88590338_88590522_88590612_88590683_88591049_88591130_88592886_88592998_88593718_88593851_88594165_88594337_88596731_88596849_88597604_88597747_88598630_88598798_88600535_88600704_88601272_88601372_88602924
ENSMUSG00000004356.9_25	chr10	-	3182	21	ISM	ENSMUSG00000004356.9	ENSMUST00000004470.9	8821	62	59299	1	-1833	-1	3prime_fragment	TRUE	canonical	3	149	junction_17	34.1691015392562	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCTGCCTGAAAGACTAT	1777	False	NA	-2	True	ATTAAA	-15	NA	88603367	88582469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_88582922_88583137_88583284_88584087_88584215_88585121_88585404_88586513_88586586_88587206_88587395_88588768_88588902_88589497_88589630_88590338_88590522_88590612_88590683_88591049_88591130_88592886_88592998_88593718_88593851_88594165_88594337_88596731_88596849_88597604_88597747_88598630_88598798_88600535_88600704_88601272_88601372_88602924_88603082_88603314
ENSMUSG00000004356.9_52	chr10	-	2856	2	FSM	ENSMUSG00000004356.9	ENSMUST00000218990.2	914	2	-1850	-92	-1850	-3	multi-exon	FALSE	canonical	3	257	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTCCTGCCTGAAAGACT	NA	False	NA	-4	True	ATTAAA	-13	NA	88585543	88582471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_88582922_88583137
ENSMUSG00000004359.17_2	chr10	-	1278	6	FSM	ENSMUSG00000004359.17	ENSMUST00000138734.2	646	6	-14	-618	-14	0	multi-exon	FALSE	canonical	3	380	junction_4	47.5815090134813	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTTGTAGACTGTCT	NA	False	NA	-5	True	AATAAA	-22	NA	88520891	88511133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88520827
ENSMUSG00000004359.17_33	chr10	-	2590	4	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-14	-414	intron_retention	FALSE	canonical	3	380	junction_2	60.5383257853146	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88520891	88512165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_88514499_88515720_88515818_88516340_88516437_88520827
ENSMUSG00000004359.17_6	chr10	-	2193	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-14	0	intron_retention	FALSE	canonical	3	380	junction_3	53.1859943970215	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTTGTAGACTGTCT	NA	False	NA	-5	True	AATAAA	-22	NA	88520891	88511133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_88511933_88513361_88514499_88515720_88515818_88516340_88516437_88520827
ENSMUSG00000004359.17_7	chr10	-	1665	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-14	-4	combination_of_known_splicesites	FALSE	canonical	3	38	junction_1	186.499329757509	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTTGCTTCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	88520891	88510637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_88511933_88514385_88514499_88515720_88515818_88516340_88516437_88520827
ENSMUSG00000004359.17_8	chr10	-	1182	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTTGTAGACTGTCT	NA	False	NA	-5	True	AATAAA	-22	NA	88520891	88511133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
ENSMUSG00000004359.17_9	chr10	-	2092	4	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-14	-5	intron_retention	FALSE	canonical	3	169	junction_3	157.700841962101	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGAAAGCATTTGTAGAC	NA	False	NA	-10	True	AATAAA	-17	NA	88520891	88511138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_88511933_88513361_88514499_88515720_88515818_88520827
ENSMUSG00000004364.15_0	chr1	-	3017	16	FSM	ENSMUSG00000004364.15	ENSMUST00000163119.8	4709	16	-204	1896	-204	4	multi-exon	FALSE	canonical	3	483	junction_14	55.1621448297854	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGGTCTTCAGTGTTGA	NA	False	NA	-23	True	AATAAA	-18	NA	80318401	80244535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_80245005_80246926_80247073_80249240_80249428_80254130_80254266_80255091_80255189_80255680_80255806_80258549_80258658_80259099_80259271_80260339_80260517_80261392_80261539_80264615_80264845_80266460_80266576_80267798_80267960_80281796_80281911_80300575_80300774_80317962
ENSMUSG00000004364.15_4	chr1	-	2887	16	NIC	ENSMUSG00000004364.15	novel	4709	16	NA	NA	-201	5	combination_of_known_junctions	FALSE	canonical	3	35	junction_14	151.899440420299	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGTCTTCAGTGTTGAT	NA	False	NA	-22	True	AATAAA	-19	NA	80318398	80244534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_80245005_80246926_80247073_80249240_80249428_80254130_80254266_80255091_80255189_80255680_80255806_80258549_80258658_80259099_80259271_80260339_80260517_80261392_80261539_80264615_80264845_80266460_80266576_80267798_80267960_80281796_80281911_80300703_80300774_80317962
ENSMUSG00000004383.19_0	chr8	-	4490	3	ISM	ENSMUSG00000004383.19	ENSMUST00000004497.11	3669	15	528821	-2828	275178	2828	3prime_fragment	FALSE	canonical	3	35	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGCACTAATACATGCTG	NA	False	NA	NA	False	NA	NA	NA	73550363	73538398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_73542650_73544703_73544900_73550320
ENSMUSG00000004383.19_1	chr8	-	4635	15	FSM	ENSMUSG00000004383.19	ENSMUST00000004497.11	3669	15	-966	0	18	0	multi-exon	FALSE	canonical	2	9	junction_14	8.74000887310996	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTCTTCTCCCTCCCA	NA	False	NA	-8	True	AATAAA	-17	NA	74080150	73541226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_73542650_73544703_73544900_73550320_73550468_73564034_73564314_73578752_73578917_73585817_73585974_73609835_73609962_73612318_73612432_73638683_73638789_73774921_73775094_73825457_73825582_73843030_73843114_73858458_73858761_73940752_73940941_74079093
ENSMUSG00000004383.19_2	chr8	-	4105	16	FSM	ENSMUSG00000004383.19	ENSMUST00000212459.2	4746	16	640	1	-344	-1	multi-exon	FALSE	canonical	0	0	junction_14	11.2834194974554	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTCTTCTCCCTCCC	NA	False	NA	-9	True	AATAAA	-16	NA	74079528	73541227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_73542650_73544703_73544900_73550320_73550468_73564034_73564314_73578752_73578917_73585817_73585974_73609835_73609962_73612318_73612432_73638683_73638789_73774921_73775094_73825457_73825582_73843030_73843114_73858458_73858761_73940752_73940941_74066821_74066915_74079093
ENSMUSG00000004383.19_21	chr8	-	2786	10	ISM	ENSMUSG00000004383.19	ENSMUST00000004497.11	3669	15	304184	2	50541	-2	3prime_fragment	FALSE	canonical	3	22	junction_9	5.81186525805423	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTCCTCTTCTCCCTCC	NA	False	NA	-10	True	AATAAA	-15	NA	73775000	73541228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_73542650_73544703_73544900_73550320_73550468_73564034_73564314_73578752_73578917_73585817_73585974_73609835_73609962_73612318_73612432_73638683_73638789_73774921
ENSMUSG00000004383.19_5	chr8	-	2010	4	ISM	ENSMUSG00000004383.19	ENSMUST00000004497.11	3669	15	514906	0	261263	0	3prime_fragment	FALSE	canonical	3	35	junction_1	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTCTTCTCCCTCCCA	NA	False	NA	-8	True	AATAAA	-17	NA	73564278	73541226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_73542650_73544703_73544900_73550320_73550468_73564034
ENSMUSG00000004383.19_6	chr8	-	1085	1	ISM	ENSMUSG00000004383.19	ENSMUST00000004497.11	3669	15	536873	0	283230	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTCTTCTCCCTCCCA	NA	False	NA	-8	True	AATAAA	-17	NA	73542311	73541226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_73541200_73542300
ENSMUSG00000004383.19_9	chr8	-	3139	13	ISM	ENSMUSG00000004383.19	ENSMUST00000004497.11	3669	15	220675	0	-32968	0	3prime_fragment	FALSE	canonical	3	22	junction_9	5.69295373441786	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTCTTCTCCCTCCCA	NA	False	NA	-8	True	AATAAA	-17	NA	73858509	73541226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_73542650_73544703_73544900_73550320_73550468_73564034_73564314_73578752_73578917_73585817_73585974_73609835_73609962_73612318_73612432_73638683_73638789_73774921_73775094_73825457_73825582_73843030_73843114_73858458
ENSMUSG00000004393.11_0	chr11	-	1875	14	NNC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	4	-47	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_12	271.174412749761	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGGGAAAAGATTGCTT	4519	False	NA	-8	True	AATAAA	-33	NA	6217742	6208965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216968_6217417_6217580_6217659
ENSMUSG00000004393.11_3	chr11	-	1876	14	FSM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	30	50	4	-50	multi-exon	FALSE	canonical	3	937	junction_7	74.9654752883426	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGTGGGAAAAGATTG	4519	False	NA	-11	True	AATAAA	-30	NA	6217742	6208968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
ENSMUSG00000004393.11_6	chr11	-	1820	14	NIC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	4	-52	combination_of_known_junctions	FALSE	canonical	3	36	junction_12	280.168482699651	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGAATGTGGGAAAAGAT	4519	False	NA	-13	True	AATAAA	-28	NA	6217742	6208970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216918_6217417_6217580_6217659
ENSMUSG00000004394.13_0	chr11	-	1632	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	26	345	21	-345	multi-exon	FALSE	canonical	3	418	junction_4	49.7663289785373	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGATGTGAAATAATAGAT	5364	False	NA	-1	True	AATAAA	-16	NA	6224844	6220713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
ENSMUSG00000004394.13_1	chr11	-	876	1	ISM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	3622	4	3617	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTAAATTCTCCCTTTG	8960	False	NA	NA	False	ATTAAA	-20	NA	6221248	6220372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_6220400_6221200
ENSMUSG00000004394.13_2	chr11	-	2148	4	FSM	ENSMUSG00000004394.13	ENSMUST00000130621.2	886	4	23	-1285	18	-7	multi-exon	FALSE	canonical	3	463	junction_2	40.4337592722825	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGAACTAAATTCTCCCT	5361	False	NA	NA	False	ATTAAA	-17	NA	6224847	6220375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397
ENSMUSG00000004394.13_4	chr11	-	1625	5	NIC	ENSMUSG00000004394.13	novel	2003	5	NA	NA	21	-345	combination_of_known_splicesites	FALSE	canonical	3	36	junction_4	203.804287246368	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGATGTGAAATAATAGAT	5364	False	NA	-1	True	AATAAA	-16	NA	6224844	6220713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224680
ENSMUSG00000004415.16_0	chr5	-	2362	11	NNC	ENSMUSG00000004415.16	novel	2724	13	NA	NA	-9698	-6	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_10	9.19565114605812	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGGTCTTTCTGTGGCT	941	False	NA	-6	True	AATAAA	-13	NA	136811598	136770618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_136772061_136773016_136773102_136775874_136775923_136777177_136777214_136778118_136778172_136780522_136780607_136783046_136783200_136783768_136783868_136786485_136786643_136794155_136794218_136811455
ENSMUSG00000004415.16_1	chr5	-	2275	11	NNC	ENSMUSG00000004415.16	novel	2724	13	NA	NA	-9715	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	14.6068477092082	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGGTCTTTCTGTGGCT	924	False	NA	-6	True	AATAAA	-13	NA	136811615	136770618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_136772061_136773016_136773102_136775874_136775923_136777177_136777214_136778118_136778172_136780522_136780607_136783046_136783200_136783768_136783868_136786485_136786643_136794155_136794218_136811559
ENSMUSG00000004415.16_14	chr5	-	3307	7	NIC	ENSMUSG00000004415.16	novel	2724	13	NA	NA	329	-4	intron_retention	FALSE	canonical	3	37	junction_3	3.23608130649127	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTCTTTCTGTGGCTTG	NA	False	NA	-4	True	AATAAA	-15	NA	136783917	136770616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_136772061_136773016_136773102_136775874_136777214_136778118_136778172_136780522_136780607_136783046_136783200_136783768
ENSMUSG00000004415.16_4	chr5	-	1061	1	ISM	ENSMUSG00000004415.16	ENSMUST00000057497.13	2724	13	140299	3	1727	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTCTTTCTGTGGCTTGT	NA	False	NA	-3	True	AATAAA	-16	NA	136771676	136770615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_136770600_136771700
ENSMUSG00000004415.16_5	chr5	-	2082	8	ISM	ENSMUSG00000004415.16	ENSMUST00000057497.13	2724	13	128032	0	303	0	3prime_fragment	FALSE	canonical	3	37	junction_4	3.15581743348207	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTCTGTGGCTTGTCAG	NA	False	NA	0	True	AATAAA	-19	NA	136783943	136770612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_136772061_136773016_136773102_136775874_136775923_136777177_136777214_136778118_136778172_136780522_136780607_136783046_136783200_136783768
ENSMUSG00000004446.13_0	chr6	-	1896	6	FSM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	25	268	8	-268	multi-exon	FALSE	canonical	3	795	junction_5	85.8011654932496	1009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTTTGGGAGAGCTGTA	NA	False	NA	-29	True	AATAAA	-13	NA	120893789	120870082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
ENSMUSG00000004446.13_4	chr6	-	1828	6	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	0	-268	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_5	358.381137896514	124	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTTTGGGAGAGCTGTA	NA	False	NA	-29	True	AATAAA	-13	NA	120893814	120870082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893787
ENSMUSG00000004451.15_0	chr1	-	2125	5	FSM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	159	5	159	-5	multi-exon	FALSE	canonical	3	967	junction_4	66.8169140263152	1574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGATTTCGCCCTTTTTCC	NA	False	NA	-9	True	AATAAA	-16	NA	119432365	119398039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
ENSMUSG00000004451.15_5	chr1	-	2069	4	ISM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	21135	5	-5580	-5	3prime_fragment	FALSE	canonical	3	982	junction_2	60.4041941148681	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGATTTCGCCCTTTTTCC	9769	False	NA	-9	True	AATAAA	-16	NA	119411389	119398039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223
ENSMUSG00000004455.17_2	chr5	+	2331	7	FSM	ENSMUSG00000004455.17	ENSMUST00000102528.11	2384	7	47	6	-31	2	multi-exon	FALSE	canonical	3	2504	junction_1	178.873092815363	2073	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGTTCGTGTCTTTCTG	NA	False	NA	-3	True	ATTAAA	-13	NA	122296387	122313330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311019_122311208_122311344_122312117
ENSMUSG00000004455.17_3	chr5	+	1462	8	FSM	ENSMUSG00000004455.17	ENSMUST00000086294.11	1442	8	-26	6	-26	2	multi-exon	FALSE	canonical	3	517	junction_7	836.265410461711	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGTTCGTGTCTTTCTG	NA	False	NA	-3	True	ATTAAA	-13	NA	122296392	122313330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311019_122311208_122311344_122312117_122312179_122313042
ENSMUSG00000004455.17_4	chr5	+	2508	6	FSM	ENSMUSG00000004455.17	ENSMUST00000128309.8	2492	6	-18	2	-18	2	multi-exon	FALSE	canonical	3	2504	junction_1	193.218425622403	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGTTCGTGTCTTTCTG	NA	False	NA	-3	True	ATTAAA	-13	NA	122296400	122313330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311344_122312117
ENSMUSG00000004460.18_1	chr16	+	1614	10	FSM	ENSMUSG00000004460.18	ENSMUST00000004574.14	1927	10	40	273	19	-191	multi-exon	FALSE	canonical	3	939	junction_3	70.1998909640038	1016	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTTTCTTTTTCCTG	NA	False	NA	33	True	AATACA	-26	NA	22676634	22690865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
ENSMUSG00000004462.8_0	chr16	-	2608	8	FSM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	129	66	0	-60	multi-exon	FALSE	canonical	3	51	junction_7	24.7526539496479	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTAACTTTTTCTCCT	NA	False	NA	NA	False	AATAAA	-5	NA	22676290	22632029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
ENSMUSG00000004462.8_18	chr16	-	3045	7	NIC	ENSMUSG00000004462.8	novel	2980	8	NA	NA	3	-441	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	32.7193452800565	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAATGTCACATAGAGCA	NA	False	NA	NA	False	AATAAA	-10	NA	22676287	22636603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22675504
ENSMUSG00000004462.8_19	chr16	-	2324	7	ISM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	120	4625	-3	-432	5prime_fragment	FALSE	canonical	3	49	junction_6	23.3410701458942	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACATAGAGCATTATTAATA	NA	False	NA	NA	False	AATAAA	-19	NA	22676297	22636594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
ENSMUSG00000004462.8_2	chr16	-	2475	8	FSM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	110	60	-13	-60	multi-exon	FALSE	canonical	3	49	junction_7	25.2214680179325	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTAACTTTTTCTCCT	NA	False	NA	NA	False	AATAAA	-5	NA	22676307	22632029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
ENSMUSG00000004462.8_21	chr16	-	2467	7	ISM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	130	4630	1	-431	5prime_fragment	FALSE	canonical	3	51	junction_6	22.6697301851316	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATAGAGCATTATTAATAA	NA	False	NA	NA	False	AATAAA	-20	NA	22676289	22636593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
ENSMUSG00000004462.8_3	chr16	-	3258	8	NIC	ENSMUSG00000004462.8	novel	2803	8	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	32.3772406836301	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTCTTTTACTGTGCCAG	NA	False	NA	NA	False	AATAAA	-13	NA	22676292	22631971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22675504
ENSMUSG00000004473.11_0	chr7	-	635	1	ISM	ENSMUSG00000004473.11	ENSMUST00000004587.11	2978	4	2013	1568	2013	-1568	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTTGAAGTTGTCCTAG	NA	False	NA	NA	False	CATAAA	-13	NA	43954313	43953678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_43953700_43954300
ENSMUSG00000004500.10_0	chr7	+	3501	4	FSM	ENSMUSG00000004500.10	ENSMUST00000038701.8	4315	4	5	809	-2	-786	multi-exon	FALSE	canonical	1	2	junction_1	0.816496580927726	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGACATGTCTCCTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	12699769	12706940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12700227_12702721_12702849_12703290_12703408_12704140
ENSMUSG00000004508.7_2	chr7	+	5318	10	FSM	ENSMUSG00000004508.7	ENSMUST00000004622.7	6168	10	160	690	-30	-690	multi-exon	FALSE	canonical	0	0	junction_1	1.33333333333333	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCCAGAGTAGACTGCTG	NA	False	NA	NA	False	AATAAA	-15	NA	96730952	96957463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_96731114_96872679_96872981_96921008_96921250_96948034_96948610_96949505_96949577_96950577_96950843_96951575_96951667_96952230_96952337_96953356_96953483_96954082
ENSMUSG00000004530.13_0	chr5	-	3435	11	FSM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	53	3	0	-3	multi-exon	FALSE	canonical	3	905	junction_1	46.3810306051946	2106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCGTGTGCTGTGCTTC	NA	False	NA	NA	False	GATAAA	-12	NA	114046766	113980499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
ENSMUSG00000004530.13_1	chr5	-	1384	1	ISM	ENSMUSG00000004530.13	ENSMUST00000164980.8	3136	9	64883	3	3798	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCGTGTGCTGTGCTTC	7858	False	NA	NA	False	GATAAA	-12	NA	113981883	113980499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113980500_113981900
ENSMUSG00000004535.13_0	chr6	+	2957	18	FSM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	34	294	0	-294	multi-exon	FALSE	canonical	3	527	junction_12	67.9651854701079	1034	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGTTCTGTGAAATAATT	NA	False	NA	12	True	AATAAA	-14	NA	52690747	52743471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
ENSMUSG00000004558.16_1	chr14	-	1975	15	FSM	ENSMUSG00000004558.16	ENSMUST00000111632.5	2103	15	122	6	-8	-6	multi-exon	TRUE	canonical	3	127	junction_6	11.1385064766607	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTGAACAGCATTGTTAA	NA	False	NA	-17	True	AATAAA	-10	NA	52150823	52142745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52150779
ENSMUSG00000004558.16_2	chr14	-	2101	15	NIC	ENSMUSG00000004558.16	novel	2103	15	NA	NA	4	-6	combination_of_known_junctions	FALSE	canonical	3	23	junction_14	33.5830526988156	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTGAACAGCATTGTTAA	9377	False	NA	-17	True	AATAAA	-10	NA	52151550	52142745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52151380
ENSMUSG00000004558.16_3	chr14	-	2020	16	FSM	ENSMUSG00000004558.16	ENSMUST00000004673.15	2099	16	61	18	-11	-6	multi-exon	FALSE	canonical	3	23	junction_14	42.8779145429854	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTGAACAGCATTGTTAA	NA	False	NA	-17	True	AATAAA	-10	NA	52150826	52142745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148542_52148585_52148922_52149004_52150779
ENSMUSG00000004561.15_13	chr14	+	1459	13	FSM	ENSMUSG00000004561.15	ENSMUST00000165100.8	1430	13	38	-67	-8	0	multi-exon	FALSE	canonical	3	48	junction_7	37.728102552636	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATAGAGGTGGATGTT	NA	False	NA	NA	False	AATAAA	-8	NA	52122383	52129317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
ENSMUSG00000004561.15_2	chr14	+	1523	14	FSM	ENSMUSG00000004561.15	ENSMUST00000047899.13	1623	14	92	8	-1	0	multi-exon	FALSE	canonical	0	0	junction_8	48.1261901412816	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATAGAGGTGGATGTT	NA	False	NA	NA	False	AATAAA	-8	NA	52122390	52129317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
ENSMUSG00000004561.15_8	chr14	+	2147	12	NIC	ENSMUSG00000004561.15	novel	1430	13	NA	NA	-5	0	intron_retention	FALSE	canonical	3	141	junction_9	16.6465443265721	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATAGAGGTGGATGTT	NA	False	NA	NA	False	AATAAA	-8	NA	52122386	52129317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
ENSMUSG00000004562.17_11	chr14	+	5165	23	NIC	ENSMUSG00000004562.17	novel	5108	24	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_22	7.39569340844626	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGACTCTGAGGAGCTC	NA	False	NA	2	True	ATTAAA	-14	NA	52222159	52243079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_52222449_52224859_52225058_52226158_52227396_52227504_52227673_52228360_52228488_52229057_52229155_52229268_52229350_52229470_52229588_52231550_52231647_52231739_52231856_52232336_52232464_52233522_52233646_52233720_52233865_52234332_52234944_52235069_52235305_52235600_52235688_52237279_52237496_52238305_52238477_52239741_52239920_52241110_52241216_52242068_52242200_52242445_52242493_52242615
ENSMUSG00000004562.17_2	chr14	+	4987	24	FSM	ENSMUSG00000004562.17	ENSMUST00000093813.12	5621	24	5	629	-1	0	multi-exon	FALSE	canonical	2	2	junction_21	8.41571129479579	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGACTCTGAGGAGCTC	NA	False	NA	2	True	ATTAAA	-14	NA	52222299	52243079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_52222449_52224859_52225058_52226158_52227396_52227504_52227673_52228360_52228488_52229057_52229155_52229268_52229350_52229470_52229588_52231550_52231647_52231739_52231856_52232336_52232464_52233522_52233646_52233720_52233865_52234332_52234944_52235069_52235305_52235600_52235688_52237279_52237496_52238305_52238477_52239741_52239920_52241110_52241216_52241429_52241574_52242068_52242200_52242445_52242493_52242797
ENSMUSG00000004562.17_21	chr14	+	169	1	ISM	ENSMUSG00000004562.17	ENSMUST00000182480.8	461	4	2069	22	-471	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTTTTAAAAAAAGTTC	NA	False	NA	NA	False	NA	NA	NA	52231159	52231328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_52231200_52231300
ENSMUSG00000004562.17_26	chr14	+	1826	10	ISM	ENSMUSG00000004562.17	ENSMUST00000182061.8	4756	23	12182	1	-640	0	3prime_fragment	FALSE	canonical	3	16	junction_7	4.44999653211129	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGACTCTGAGGAGCTC	NA	False	NA	2	True	ATTAAA	-14	NA	52234569	52243079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_52234944_52235069_52235305_52235600_52235688_52237279_52237496_52238305_52238477_52239741_52239920_52241110_52241216_52242068_52242200_52242445_52242493_52242797
ENSMUSG00000004562.17_30	chr14	+	5326	24	FSM	ENSMUSG00000004562.17	ENSMUST00000182909.8	5108	24	-225	7	-35	-2	multi-exon	FALSE	canonical	2	2	junction_21	8.94173536736366	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGTGACTCTGAGGAGC	NA	False	NA	0	True	ATTAAA	-12	NA	52222140	52243077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_52222449_52224859_52225058_52226158_52227396_52227504_52227673_52228360_52228488_52229057_52229155_52229268_52229350_52229470_52229588_52231550_52231647_52231739_52231856_52232336_52232464_52233522_52233646_52233720_52233865_52234332_52234944_52235069_52235305_52235600_52235688_52237279_52237496_52238305_52238477_52239741_52239920_52241110_52241216_52241429_52241574_52242068_52242200_52242445_52242493_52242615
ENSMUSG00000004562.17_6	chr14	+	4972	24	FSM	ENSMUSG00000004562.17	ENSMUST00000100639.11	4843	24	-131	2	14	-2	multi-exon	FALSE	canonical	2	3	junction_22	8.08906003498104	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGTGACTCTGAGGAGC	NA	False	NA	0	True	ATTAAA	-12	NA	52222189	52243077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_52222449_52224859_52225058_52226158_52227396_52227504_52227673_52228360_52228488_52229057_52229155_52229268_52229350_52229470_52229588_52231550_52231647_52231739_52231856_52232336_52232464_52233522_52233646_52233720_52233865_52234332_52234944_52235069_52235305_52235600_52235688_52237279_52237496_52238305_52238477_52239741_52239920_52241110_52241216_52242068_52242200_52242335_52242357_52242445_52242493_52242797
ENSMUSG00000004562.17_7	chr14	+	4895	23	FSM	ENSMUSG00000004562.17	ENSMUST00000182061.8	4756	23	-140	1	-42	0	multi-exon	FALSE	canonical	3	11	junction_3	6.51951932518073	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGACTCTGAGGAGCTC	NA	False	NA	2	True	ATTAAA	-14	NA	52222247	52243079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_52222449_52224859_52225058_52226158_52227396_52227504_52227673_52228360_52228488_52229057_52229155_52229268_52229350_52229470_52229588_52231550_52231647_52231739_52231856_52232336_52232464_52233522_52233646_52233720_52233865_52234332_52234944_52235069_52235305_52235600_52235688_52237279_52237496_52238305_52238477_52239741_52239920_52241110_52241216_52242068_52242200_52242445_52242493_52242797
ENSMUSG00000004565.16_16	chr8	+	4348	32	ISM	ENSMUSG00000004565.16	ENSMUST00000208002.2	4444	35	1483	5	34	2	3prime_fragment	FALSE	canonical	1	71	junction_27	44.5244031581209	238	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCAGCCTGGTGCTGTCTT	NA	False	NA	12	True	AATAAA	-16	NA	3566907	3594262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ENSMUSG00000004565.16_20	chr8	+	4354	32	ISM	ENSMUSG00000004565.16	ENSMUST00000111070.4	4496	35	1530	4	40	2	3prime_fragment	FALSE	canonical	1	71	junction_27	50.3064283424121	121	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCAGCCTGGTGCTGTCTT	NA	False	NA	12	True	AATAAA	-16	NA	3566913	3594262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ENSMUSG00000004567.17_1	chr8	+	2010	14	FSM	ENSMUSG00000004567.17	ENSMUST00000004683.13	2065	14	52	3	5	0	multi-exon	FALSE	canonical	3	278	junction_8	29.619280463035	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCGGTGGTCTAATTTG	NA	False	NA	9	True	AATAAA	-10	NA	3550508	3565229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3550628_3555737_3555944_3557148_3557317_3557400_3557567_3558318_3558428_3558683_3558781_3559135_3559236_3560319_3560427_3560539_3560690_3560813_3560916_3561687_3561811_3562649_3562866_3564782_3564914_3565013
ENSMUSG00000004567.17_15	chr8	+	2100	13	ISM	ENSMUSG00000004567.17	ENSMUST00000004683.13	2065	14	62	3	-15	0	intron_retention	FALSE	canonical	3	278	junction_8	30.3547314635169	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCGGTGGTCTAATTTG	NA	False	NA	9	True	AATAAA	-10	NA	3550518	3565229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_3550628_3555737_3555944_3557148_3557317_3557400_3557567_3558318_3558428_3558683_3558781_3559135_3559236_3560319_3560427_3560539_3560690_3560813_3560916_3561687_3561811_3562649_3562866_3564782
ENSMUSG00000004567.17_2	chr8	+	4019	12	ISM	ENSMUSG00000004567.17	ENSMUST00000004683.13	2065	14	60	3	13	0	intron_retention	FALSE	canonical	3	278	junction_8	31.5654901005712	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCGGTGGTCTAATTTG	NA	False	NA	9	True	AATAAA	-10	NA	3550516	3565229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_3550628_3555737_3555944_3557148_3557317_3557400_3557567_3558318_3558428_3558683_3558781_3559135_3559236_3560319_3560427_3560539_3560690_3560813_3560916_3561687_3561811_3562649
ENSMUSG00000004568.14_1	chr8	+	5264	20	FSM	ENSMUSG00000004568.14	ENSMUST00000004684.13	5271	20	1	6	1	-5	multi-exon	TRUE	canonical	3	218	junction_1	25.5526180280738	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCATCTCAGGCTGAAAC	NA	False	NA	18	True	AATAAA	-8	NA	3443038	3506595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501539_3501630_3501679_3501814_3502286_3503037_3503372_3504158_3504285_3504371
ENSMUSG00000004568.14_77	chr8	+	2949	4	ISM	ENSMUSG00000004568.14	ENSMUST00000238786.2	3794	19	25321	-2055	1263	-5	3prime_fragment	FALSE	canonical	3	228	junction_3	26.2466929133727	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCATCTCAGGCTGAAAC	1481	False	NA	18	True	AATAAA	-8	NA	3502020	3506595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_3502286_3503037_3503372_3504158_3504285_3504371
ENSMUSG00000004568.14_80	chr8	+	2598	3	ISM	ENSMUSG00000004568.14	ENSMUST00000238786.2	3794	19	26424	-2055	2366	-5	3prime_fragment	FALSE	canonical	3	228	junction_2	25	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCATCTCAGGCTGAAAC	2584	False	NA	18	True	AATAAA	-8	NA	3503123	3506595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_3503372_3504158_3504285_3504371
ENSMUSG00000004568.14_81	chr8	+	1466	1	ISM	ENSMUSG00000004568.14	ENSMUST00000239102.2	6574	29	101695	4	4374	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATCTCAGGCTGAAACAG	4592	False	NA	20	True	AATAAA	-10	NA	3505131	3506597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_3505100_3506600
ENSMUSG00000004591.17_1	chr3	-	5551	22	FSM	ENSMUSG00000004591.17	ENSMUST00000043812.15	6207	22	28	628	7	-628	multi-exon	FALSE	canonical	3	374	junction_13	40.9391451479165	941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAAATTTGTAATTTTGG	NA	False	NA	-14	True	CATAAA	-35	NA	142587737	142497290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_142499776_142499863_142499945_142500148_142500257_142504663_142504807_142505565_142505643_142506800_142506864_142509314_142509492_142515233_142515326_142515402_142515479_142515584_142515716_142516121_142516249_142516451_142516627_142517287_142517364_142517674_142517819_142526297_142526408_142527279_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174_142559476_142587371
ENSMUSG00000004591.17_65	chr3	-	1701	7	ISM	ENSMUSG00000004591.17	ENSMUST00000172521.8	2510	16	5	16524	-2	-4	5prime_fragment	FALSE	canonical	3	467	junction_2	29.0975371237269	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAATGAAACCCTGAATA	NA	False	NA	NA	False	AATAAA	-9	NA	142587746	142527073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174_142559476_142587371
ENSMUSG00000004610.5_0	chr7	+	823	6	FSM	ENSMUSG00000004610.5	ENSMUST00000004729.5	893	6	49	21	2	-1	multi-exon	FALSE	canonical	3	1745	junction_1	117.194539121923	594	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCACTGCCTCTTTCCTC	1957	False	NA	31	True	AATAAA	-14	NA	43093555	43107203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43106993
ENSMUSG00000004626.15_2	chr8	+	1865	19	FSM	ENSMUSG00000004626.15	ENSMUST00000160708.8	2908	19	193	850	-4	0	multi-exon	FALSE	canonical	3	307	junction_10	31.5352536413174	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGGGCTCACCTCATTTT	4580	False	NA	15	True	AATAAA	-21	NA	3681147	3692794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
ENSMUSG00000004626.15_29	chr8	+	1933	19	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	83.3438697042797	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGGGCTCACCTCATTT	4585	False	NA	14	True	AATAAA	-20	NA	3681152	3692793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_3681279_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
ENSMUSG00000004626.15_5	chr8	+	1865	19	FSM	ENSMUSG00000004626.15	ENSMUST00000004745.9	1847	19	-19	1	-1	0	multi-exon	FALSE	canonical	3	69	junction_17	74.555886735479	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGGGCTCACCTCATTTT	4583	False	NA	15	True	AATAAA	-21	NA	3681150	3692794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691894_3692056_3692645
ENSMUSG00000004631.16_0	chr6	-	1605	11	FSM	ENSMUSG00000004631.16	ENSMUST00000115579.8	1696	11	88	3	0	1	multi-exon	FALSE	canonical	3	7	junction_4	4.92848861214064	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTGTGGTAAAATTTCT	-17	True	NA	NA	False	AATAAA	-33	NA	4747116	4674352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_4674633_4678066_4678111_4689578_4689768_4690468_4690496_4691428_4691641_4694021_4694185_4707073_4707273_4711307_4711381_4717920_4718079_4719373_4719497_4746979
ENSMUSG00000004631.16_5	chr6	-	275	1	ISM	ENSMUSG00000004631.16	ENSMUST00000115577.9	1776	12	72545	7	37397	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCTAATGTGTGGTAAAAT	NA	False	NA	NA	False	AATAAA	-29	NA	4674631	4674356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_4674400_4674600
ENSMUSG00000004633.18_0	chr6	+	3122	13	FSM	ENSMUSG00000004633.18	ENSMUST00000046856.14	2418	13	373	-1077	-93	-12	multi-exon	FALSE	canonical	2	10	junction_6	4.03026742978125	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCCATCATTTTGGAGCG	NA	False	NA	NA	False	ATTAAA	-5	NA	54016930	54278783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_54017141_54150448_54150488_54171010_54171067_54192646_54192679_54195508_54195623_54197401_54197688_54250060_54250139_54263078_54263164_54267251_54267426_54270022_54270101_54272768_54272907_54275029_54275136_54277057
ENSMUSG00000004633.18_1	chr6	+	2833	7	FSM	ENSMUSG00000004633.18	ENSMUST00000114403.8	1274	7	-70	-1489	-70	1489	multi-exon	FALSE	canonical	0	0	junction_6	7.55902698029904	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGCGTCTGTATTAACT	NA	False	NA	NA	False	AATAAA	-9	NA	54016953	54201024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_54017141_54150448_54150488_54171010_54171067_54192646_54192679_54195508_54195623_54197401_54197688_54198905
ENSMUSG00000004633.18_2	chr6	+	1728	1	ISM	ENSMUSG00000004633.18	ENSMUST00000067741.10	2983	7	27584	9	27166	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCATTTTGGAGCGTGT	4228	False	NA	NA	False	ATTAAA	-8	NA	54277058	54278786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_54277100_54278800
ENSMUSG00000004637.16_18	chr8	+	2634	1	ISM	ENSMUSG00000004637.16	ENSMUST00000160005.2	3781	5	11483	0	2975	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTAGGTGGCTTTTGGG	NA	False	NA	6	True	AATAAA	-6	NA	115177924	115180558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_115177900_115180600
ENSMUSG00000004637.16_19	chr8	+	2198	9	NNC	ENSMUSG00000004637.16	novel	2244	9	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	40.6294228361664	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATGGTTGTCTGAAGTG	NA	False	NA	9	True	AATAAA	-12	NA	115166438	116079444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_116078375
ENSMUSG00000004637.16_2	chr8	+	3781	5	FSM	ENSMUSG00000004637.16	ENSMUST00000160005.2	3781	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	47.8663503935698	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTAGGTGGCTTTTGGG	NA	False	NA	6	True	AATAAA	-6	NA	115166441	115180558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115177256
ENSMUSG00000004637.16_6	chr8	+	1757	9	FSM	ENSMUSG00000004637.16	ENSMUST00000109108.9	1771	9	8	6	1	-6	multi-exon	FALSE	canonical	0	0	junction_8	40.6294228361664	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATACAGAAAGGAAAGT	NA	False	NA	NA	False	AATAAA	-13	NA	115166442	115601972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_115601340
ENSMUSG00000004642.14_2	chr5	-	1642	8	FSM	ENSMUSG00000004642.14	ENSMUST00000057551.14	1906	8	256	8	-12	-8	multi-exon	FALSE	canonical	3	1110	junction_4	44.1837535937436	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGTAACATTGCCCTATA	NA	False	NA	-12	True	AATAAA	-14	NA	33809662	33797406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
ENSMUSG00000004661.16_1	chr9	-	4029	9	NIC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	-5	0	intron_retention	FALSE	canonical	3	208	junction_3	16.1303285769385	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAGCCAGTATGGGATC	NA	False	NA	-9	True	AATAAA	-14	NA	57744058	57697641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
ENSMUSG00000004661.16_11	chr9	-	1593	1	NIC	ENSMUSG00000004661.16	novel	1259	5	NA	NA	-300	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCAGTATGGGATCCTT	NA	False	NA	-6	True	AATAAA	-17	NA	57699231	57697638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57697600_57699200
ENSMUSG00000004661.16_3	chr9	-	1931	8	FSM	ENSMUSG00000004661.16	ENSMUST00000098686.4	1969	8	38	0	6	0	multi-exon	FALSE	canonical	3	208	junction_2	15.8603600340019	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCTTTTTCTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	57744038	57701969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
ENSMUSG00000004661.16_7	chr9	-	3634	8	FSM	ENSMUSG00000004661.16	ENSMUST00000004780.16	3785	8	307	-156	307	-1	multi-exon	FALSE	canonical	3	208	junction_3	15.4906159875413	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGCCAGTATGGGATCCT	NA	False	NA	-7	True	AATAAA	-16	NA	57741212	57697639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898
ENSMUSG00000004665.11_0	chr10	+	1752	7	FSM	ENSMUSG00000004665.11	ENSMUST00000004784.11	2460	7	31	677	-8	-677	multi-exon	FALSE	canonical	3	82	junction_2	7.8616509433805	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAGTAAAGTACATTCCT	1800	False	NA	2	True	NA	NA	NA	79824448	79831219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79824575_79827193_79827316_79828106_79828174_79828276_79828415_79829047_79829165_79829261_79829409_79830184
ENSMUSG00000004665.11_2	chr10	+	3122	4	NIC	ENSMUSG00000004665.11	novel	2460	7	NA	NA	2135	-677	intron_retention	FALSE	canonical	3	86	junction_1	8.33999733546454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAGTAAAGTACATTCCT	274	False	NA	2	True	NA	NA	NA	79826591	79831219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_79828415_79829047_79829165_79829261_79829409_79830184
ENSMUSG00000004667.19_0	chr10	-	1044	7	FSM	ENSMUSG00000004667.19	ENSMUST00000004786.10	1148	7	98	6	4	-4	multi-exon	FALSE	canonical	3	2552	junction_2	153.800375667797	1548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTACTGTGGTGCAATCC	5613	False	NA	-25	True	ATTAAA	-13	NA	79875531	79871788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUSG00000004667.19_6	chr10	-	1132	6	FSM	ENSMUSG00000004667.19	ENSMUST00000152843.2	900	6	-8	-224	1	0	multi-exon	FALSE	canonical	3	2552	junction_2	164.012926319848	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGGTGCAATCCTAGA	5601	False	NA	-21	True	ATTAAA	-17	NA	79875543	79871784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79872136_79872360_79872433_79872597_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUSG00000004677.18_121	chr8	+	903	1	ISM	ENSMUSG00000004677.18	ENSMUST00000170242.8	7297	40	87095	1	11031	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGGTCTTGCTGCTTG	NA	False	NA	14	True	AATAAA	-17	NA	71812452	71813355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71812500_71813400
ENSMUSG00000004748.6_0	chr11	-	1375	4	FSM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	34	2	34	-2	multi-exon	FALSE	canonical	3	154	junction_3	5.18544972870135	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTCCTTTTCATTTCCTC	NA	False	NA	-1	True	AATAAA	-15	NA	4045411	4041481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4042300_4043800_4044034_4044388_4044517_4045215
ENSMUSG00000004748.6_2	chr11	-	436	1	ISM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	3529	1	3224	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCTTTTCATTTCCTCT	NA	False	NA	0	True	AATAAA	-16	NA	4041916	4041480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_4041500_4041900
ENSMUSG00000004748.6_4	chr11	-	2429	2	ISM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	26	10	26	-10	intron_retention	FALSE	canonical	3	165	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGGCATCTCCTTTTC	NA	False	NA	-9	True	AATAAA	-7	NA	4045419	4041489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_4042300_4043800
ENSMUSG00000004768.15_0	chr1	+	2513	8	FSM	ENSMUSG00000004768.15	ENSMUST00000088287.10	4322	8	16	1793	1	-1	multi-exon	FALSE	canonical	2	71	junction_6	20.1190335305671	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTCTTGTCTTTTTTTT	NA	False	NA	68	True	TATAAA	-11	NA	33758991	33779852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
ENSMUSG00000004768.15_1	chr1	+	2311	8	NNC	ENSMUSG00000004768.15	novel	4322	8	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	40.1512446753471	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACGTGTGCTTTTCCTTTCT	NA	False	NA	6	True	TATAAA	-16	NA	33758978	33779790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_33759102_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
ENSMUSG00000004768.15_12	chr1	+	3243	8	NIC	ENSMUSG00000004768.15	novel	4322	8	NA	NA	12	727	combination_of_known_junctions	FALSE	canonical	1	3	junction_2	39.8082136945508	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTCACGTTATTGGTTT	NA	False	NA	NA	False	AATATA	-19	NA	33759002	33780580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_33759255_33760688_33760794_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
ENSMUSG00000004768.15_26	chr1	+	1814	4	FSM	ENSMUSG00000004768.15	ENSMUST00000150593.8	1966	4	210	-58	210	-3	multi-exon	FALSE	canonical	2	71	junction_2	15.5777619273972	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTCTCTTGTCTTTTTT	NA	False	NA	66	True	TATAAA	-9	NA	33773818	33779850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_33773940_33775880_33775964_33777368_33777462_33778333
ENSMUSG00000004768.15_29	chr1	+	2493	1	ISM	ENSMUSG00000004768.15	ENSMUST00000088287.10	4322	8	20036	141	1794	-134	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAGAAAACTACTTGTAT	NA	False	NA	NA	False	AATAAA	-19	NA	33779011	33781504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_33779000_33781500
ENSMUSG00000004768.15_3	chr1	+	2904	9	NNC	ENSMUSG00000004768.15	novel	4322	8	NA	NA	3	325	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	49.6758240998577	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTGGCAGAAAATTCATT	NA	False	NA	NA	False	AATAAA	-20	NA	33758993	33780178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775200_33775268_33775880_33775964_33777368_33777462_33778333
ENSMUSG00000004771.13_1	chr9	-	1026	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	4	1306	-2	0	multi-exon	TRUE	canonical	3	899	junction_3	39.0160223497988	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTGTTTACTCTTCAT	NA	False	NA	-4	True	AATAAA	-20	NA	64645036	64623886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
ENSMUSG00000004771.13_5	chr9	-	3475	3	NIC	ENSMUSG00000004771.13	novel	2336	5	NA	NA	2	-4	intron_retention	FALSE	canonical	3	952	junction_2	28	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGTTATTGTTTACTCT	NA	False	NA	-8	True	AATAAA	-16	NA	64645032	64623890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_64624271_64632783_64635712_64644865
ENSMUSG00000004788.12_0	chr12	+	1439	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	31	135	-1	0	multi-exon	FALSE	canonical	3	336	junction_7	13.1661284657074	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGTTCGTTTATTGTTC	NA	False	NA	31	True	AATAAA	-16	NA	85266285	85273267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
ENSMUSG00000004788.12_3	chr12	+	1428	8	NIC	ENSMUSG00000004788.12	novel	1605	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	119.526446565484	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGTTCGTTTATTGTTC	NA	False	NA	31	True	AATAAA	-16	NA	85266287	85273267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_85266499_85266595_85266708_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
ENSMUSG00000004789.11_0	chr12	+	2724	15	FSM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	35	5	10	-5	multi-exon	FALSE	canonical	3	294	junction_7	23.9123612470237	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGGGCTCCGGGATCTG	NA	False	NA	15	True	ATTAAA	-15	NA	85157641	85180857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
ENSMUSG00000004789.11_32	chr12	+	973	1	ISM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	22278	5	2670	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGGGCTCCGGGATCTG	NA	False	NA	15	True	ATTAAA	-15	NA	85179884	85180857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_85179900_85180900
ENSMUSG00000004791.8_2	chr12	-	834	2	FSM	ENSMUSG00000004791.8	ENSMUST00000222850.2	688	2	476	-622	476	-4	multi-exon	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAACATGTCTAGGATGT	NA	False	NA	NA	False	AATAAA	-15	NA	85216193	85213416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_85214189_85216131
ENSMUSG00000004798.15_0	chr11	-	5618	26	NIC	ENSMUSG00000004798.15	novel	5743	27	NA	NA	-14	-1	combination_of_known_splicesites	TRUE	canonical	1	1	junction_12	5.75277324427098	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTATTTCATATCATGT	NA	False	NA	NA	False	AATAAA	-21	NA	61745913	61666475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_61668666_61670499_61670636_61672417_61672576_61672831_61672951_61674362_61674542_61678254_61678464_61682259_61682410_61689888_61689993_61690285_61690477_61690727_61691015_61692308_61692390_61694467_61694614_61703543_61703605_61710110_61710283_61715464_61715554_61716667_61716716_61718427_61718511_61720217_61720277_61721415_61721518_61724238_61724313_61725605_61725780_61730935_61730973_61732124_61732158_61741887_61741930_61744091_61744185_61745312
ENSMUSG00000004798.15_1	chr11	-	5177	27	FSM	ENSMUSG00000004798.15	ENSMUST00000004920.4	5743	27	12	554	12	-554	multi-exon	FALSE	canonical	3	9	junction_8	4.53666848543571	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTTGGGTTAATATGAAG	NA	False	NA	NA	False	AATAAA	-21	NA	61745887	61667028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61668666_61670499_61670636_61672417_61672576_61672831_61672951_61674362_61674542_61678254_61678464_61682259_61682410_61689888_61689993_61690285_61690477_61690727_61691015_61692308_61692390_61694467_61694614_61698887_61699026_61703543_61703605_61710110_61710283_61715464_61715554_61716667_61716716_61718427_61718511_61720217_61720277_61721415_61721518_61724238_61724313_61725605_61725780_61730935_61730973_61732124_61732158_61741887_61741930_61744091_61744185_61745312
ENSMUSG00000004815.13_0	chr5	-	4563	23	FSM	ENSMUSG00000004815.13	ENSMUST00000053913.13	4938	23	21	354	21	0	multi-exon	FALSE	canonical	3	33	junction_4	9.2499720794754	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTGACTCTTGTCTTTG	NA	False	NA	-3	True	AATACA	-22	NA	108808656	108794912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_108796678_108797010_108797164_108797243_108797356_108797452_108797600_108797690_108797792_108798066_108798246_108798355_108798505_108798682_108798835_108800259_108800376_108801046_108801086_108801501_108801653_108801949_108802012_108802221_108802277_108802409_108802501_108802581_108802803_108802973_108803075_108803155_108803231_108803305_108803460_108803709_108803836_108803911_108803998_108804289_108804390_108806071_108806152_108808308
ENSMUSG00000004815.13_19	chr5	-	4747	22	NIC	ENSMUSG00000004815.13	novel	4938	23	NA	NA	15	0	intron_retention	FALSE	canonical	3	33	junction_4	9.43097612432543	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTGACTCTTGTCTTTG	NA	False	NA	-3	True	AATACA	-22	NA	108808662	108794912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_108796678_108797010_108797164_108797243_108797356_108797452_108797600_108797690_108797792_108798066_108798246_108798355_108798835_108800259_108800376_108801046_108801086_108801501_108801653_108801949_108802012_108802221_108802277_108802409_108802501_108802581_108802803_108802973_108803075_108803155_108803231_108803305_108803460_108803709_108803836_108803911_108803998_108804289_108804390_108806071_108806152_108808308
ENSMUSG00000004815.13_22	chr5	-	1547	1	ISM	ENSMUSG00000004815.13	ENSMUST00000053913.13	4938	23	12218	354	1334	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTGACTCTTGTCTTTG	NA	False	NA	-3	True	AATACA	-22	NA	108796459	108794912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_108794900_108796500
ENSMUSG00000004837.3_0	chr11	+	1605	5	FSM	ENSMUSG00000004837.3	ENSMUST00000004959.3	1662	5	52	5	52	-5	multi-exon	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAATCTTTCTCCCCATAT	NA	False	NA	NA	False	AATAAA	-17	NA	61544142	61563605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_61544251_61551047_61551146_61555010_61555134_61560661_61560831_61562498
ENSMUSG00000004843.8_0	chr16	-	1837	6	FSM	ENSMUSG00000004843.8	ENSMUST00000004965.8	1872	6	30	5	30	-5	multi-exon	FALSE	canonical	3	234	junction_5	16.0573970493352	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATGACTGCCTAACGCG	NA	False	NA	-13	True	AATAAA	-14	NA	65359582	65336018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65359360
ENSMUSG00000004846.11_2	chr5	+	2779	19	FSM	ENSMUSG00000004846.11	ENSMUST00000004968.11	3280	19	390	111	31	-111	multi-exon	FALSE	canonical	3	142	junction_1	18.3673926051335	278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATTGAGTCCGTGAGTC	NA	False	NA	11	True	AATAAA	-12	NA	137016262	137025391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
ENSMUSG00000004849.15_0	chr5	-	1257	5	FSM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	90	6	-3	-6	multi-exon	FALSE	canonical	3	639	junction_4	57.0586321252096	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGACTTTGCCTTGGCTT	NA	False	NA	-5	True	AATAAA	-19	NA	137074899	137063852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137074861
ENSMUSG00000004849.15_2	chr5	-	1220	4	ISM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	2892	6	2164	-6	3prime_fragment	FALSE	canonical	3	760	junction_1	7.11805216802087	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGACTTTGCCTTGGCTT	172	False	NA	-5	True	AATAAA	-19	NA	137072097	137063852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917
ENSMUSG00000004849.15_5	chr5	-	2171	5	NIC	ENSMUSG00000004849.15	novel	1353	5	NA	NA	111	-6	combination_of_known_junctions	FALSE	canonical	2	7	junction_4	330.446194561233	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGACTTTGCCTTGGCTT	NA	False	NA	-5	True	AATAAA	-19	NA	137074785	137063852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137073833
ENSMUSG00000004864.14_1	chr17	+	1504	11	NIC	ENSMUSG00000004864.14	novel	2937	12	NA	NA	-18	198	intron_retention	FALSE	canonical	3	77	junction_10	10.3580886267689	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCAATGCCCCTTTTCTG	NA	False	NA	10	True	NA	NA	NA	28988291	28997676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28988503_28988984_28989115_28990131_28990191_28994227_28994337_28994527_28994558_28995108_28995391_28995475_28995548_28996455_28996536_28996696_28996776_28997050_28997228_28997401
ENSMUSG00000004864.14_2	chr17	+	1381	12	FSM	ENSMUSG00000004864.14	ENSMUST00000233984.2	2937	12	22	1534	-17	195	multi-exon	FALSE	canonical	3	65	junction_6	12.7227264607489	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCTCAATGCCCCTTTT	NA	False	NA	7	True	NA	NA	NA	28988292	28997673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28988503_28988984_28989115_28990131_28990191_28994227_28994337_28994527_28994558_28995108_28995157_28995275_28995391_28995475_28995548_28996455_28996536_28996696_28996776_28997050_28997228_28997401
ENSMUSG00000004865.17_0	chr17	-	4323	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.660996406253	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAACCTGCTTGGTTCCAC	NA	False	NA	-20	True	AATAAA	-11	NA	28841427	28806630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_28808346_28808410_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ENSMUSG00000004865.17_2	chr17	-	2453	16	FSM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	256	1944	-2	-2	multi-exon	FALSE	canonical	3	554	junction_1	86.150875406657	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGTGGTTTCTATGCTC	NA	False	NA	-4	True	ATTAAA	-37	NA	28841427	28808565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ENSMUSG00000004865.17_72	chr17	-	2827	15	FSM	ENSMUSG00000004865.17	ENSMUST00000233440.2	4804	15	34	1943	-2	-1	multi-exon	FALSE	canonical	3	554	junction_1	84.536943982848	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTGGTTTCTATGCTCA	NA	False	NA	-3	True	ATTAAA	-38	NA	28841427	28808564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ENSMUSG00000004880.12_0	chr1	-	3475	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	27	8	9	-8	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	4308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGAGTTGCTGTTA	NA	False	NA	42	True	AATAAA	-25	NA	181669917	181642907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
ENSMUSG00000004880.12_2	chr1	-	3413	13	ISM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	3820	8	3767	-8	3prime_fragment	FALSE	canonical	3	1956	junction_6	140.360522900454	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGAGTTGCTGTTA	NA	False	NA	42	True	AATAAA	-25	NA	181666124	181642907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942
ENSMUSG00000004885.6_1	chr3	+	896	4	FSM	ENSMUSG00000004885.6	ENSMUST00000005019.6	931	4	30	5	30	-5	multi-exon	FALSE	canonical	3	31	junction_1	3.29983164553722	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATCCTTCTGTGGCTCC	8861	False	NA	3	True	ATTAAA	-14	NA	87856002	87860678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87856218_87859421_87859601_87859784_87859902_87860293
ENSMUSG00000004885.6_2	chr3	+	664	3	ISM	ENSMUSG00000004885.6	ENSMUST00000005019.6	931	4	3460	11	-18	-11	3prime_fragment	FALSE	canonical	3	34	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTAAAATCCTTCTGT	1424	False	NA	-3	True	ATTAAA	-8	NA	87859432	87860672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_87859601_87859784_87859902_87860293
ENSMUSG00000004891.17_0	chr3	+	6098	4	FSM	ENSMUSG00000004891.17	ENSMUST00000090973.12	6126	4	24	4	-12	-4	multi-exon	FALSE	canonical	3	22	junction_3	1.4142135623731	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATGTCTGGCTGCTTTCT	NA	False	NA	6	True	AATAAA	-16	NA	87878423	87887754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87879296_87880298_87880424_87882108_87882183_87882727
ENSMUSG00000004891.17_1	chr3	+	2829	1	ISM	ENSMUSG00000004891.17	ENSMUST00000090973.12	6126	4	6526	4	6490	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATGTCTGGCTGCTTTCT	NA	False	NA	6	True	AATAAA	-16	NA	87884925	87887754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_87884900_87887800
ENSMUSG00000004895.10_0	chr3	-	2059	7	FSM	ENSMUSG00000004895.10	ENSMUST00000005015.10	2099	7	28	12	28	-12	multi-exon	FALSE	canonical	3	312	junction_5	35.6401770789964	593	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTGCCTACAAGGTGT	2327	False	NA	-11	True	AATAAA	-15	NA	87792887	87766221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_87766654_87767452_87767519_87769437_87769582_87774621_87774718_87776889_87777457_87779516_87779565_87792181
ENSMUSG00000004896.17_1	chr3	-	1736	8	FSM	ENSMUSG00000004896.17	ENSMUST00000005016.16	2492	8	0	756	0	-2	multi-exon	FALSE	canonical	3	36	junction_2	29.6922995583236	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACCATGTAATTTTTAT	9443	False	NA	-25	True	TATAAA	-24	NA	87837451	87830967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
ENSMUSG00000004896.17_11	chr3	-	3920	6	ISM	ENSMUSG00000004896.17	ENSMUST00000160648.8	3157	7	-16	1060	1	-2	intron_retention	FALSE	canonical	3	33	junction_5	33.4388995034227	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACCATGTAATTTTTAT	9444	False	NA	-25	True	TATAAA	-24	NA	87837450	87830967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835023_87835230
ENSMUSG00000004896.17_18	chr3	-	2596	7	FSM	ENSMUSG00000004896.17	ENSMUST00000160074.8	1620	7	-981	5	122	0	multi-exon	FALSE	canonical	3	33	junction_6	36.9357550349252	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATACCATGTAATTTTT	NA	False	NA	-27	True	TATAAA	-22	NA	87836546	87830969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87835023_87835230
ENSMUSG00000004896.17_2	chr3	-	2151	7	FSM	ENSMUSG00000004896.17	ENSMUST00000159091.9	3197	7	-16	1062	1	0	multi-exon	FALSE	canonical	3	63	junction_5	23.5849528301415	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATACCATGTAATTTTT	9444	False	NA	-27	True	TATAAA	-22	NA	87837450	87830969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
ENSMUSG00000004896.17_22	chr3	-	3946	6	ISM	ENSMUSG00000004896.17	ENSMUST00000159091.9	3197	7	-4	1062	-4	0	intron_retention	FALSE	canonical	3	63	junction_5	23.591523901605	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATACCATGTAATTTTT	9456	False	NA	-27	True	TATAAA	-22	NA	87837438	87830969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230
ENSMUSG00000004896.17_25	chr3	-	4120	5	ISM	ENSMUSG00000004896.17	ENSMUST00000160648.8	3157	7	-10	1062	1	0	intron_retention	FALSE	canonical	3	80	junction_4	17.8115131305569	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATACCATGTAATTTTT	9450	False	NA	-27	True	TATAAA	-22	NA	87837444	87830969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869
ENSMUSG00000004896.17_8	chr3	-	3160	7	FSM	ENSMUSG00000004896.17	ENSMUST00000160648.8	3157	7	-16	13	1	-13	multi-exon	FALSE	canonical	3	33	junction_5	31.4046174948844	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCTTTAAAACAATTAACAG	9444	False	NA	-15	True	NA	NA	NA	87837450	87829920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835023_87835230_87835356_87837162
ENSMUSG00000004897.17_1	chr3	+	2189	6	FSM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	49	7	49	-7	multi-exon	FALSE	canonical	3	2720	junction_5	175.133549041867	5014	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGATTCTGACTAATTC	NA	False	NA	18	True	AATAAA	-14	NA	87813676	87823432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
ENSMUSG00000004929.13_0	chr10	+	2423	13	FSM	ENSMUSG00000004929.13	ENSMUST00000005057.7	2832	13	69	340	-23	-340	multi-exon	TRUE	canonical	3	459	junction_3	51.2387521532504	987	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTGCCTGGTCCTCTCTC	5519	False	NA	9	True	ATTAAA	-15	NA	80905937	80918053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80906113_80908986_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
ENSMUSG00000004931.12_12	chr10	+	2020	11	NIC	ENSMUSG00000004931.12	novel	2106	11	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	17	junction_5	64.5607465880004	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAGTGGTCAGAAGCTT	1367	False	NA	16	True	TATAAA	-19	NA	81104052	81109068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107225_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ENSMUSG00000004931.12_2	chr10	+	2041	11	FSM	ENSMUSG00000004931.12	ENSMUST00000057798.9	2106	11	50	15	1	-4	multi-exon	FALSE	canonical	3	174	junction_1	25.7441255435099	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATTAAGTGGTCAGAAG	1370	False	NA	13	True	TATAAA	-16	NA	81104055	81109065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ENSMUSG00000004931.12_3	chr10	+	1967	11	NIC	ENSMUSG00000004931.12	novel	2106	11	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	59.7863696840676	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATTAAGTGGTCAGAAG	1365	False	NA	13	True	TATAAA	-16	NA	81104050	81109065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_81104154_81104691_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ENSMUSG00000004931.12_30	chr10	+	1591	10	ISM	ENSMUSG00000004931.12	ENSMUST00000057798.9	2106	11	955	19	-414	-8	3prime_fragment	FALSE	canonical	3	184	junction_4	23.2559563590242	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATTTATTAAGTGGTCA	2275	False	NA	9	True	TATAAA	-12	NA	81104960	81109061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ENSMUSG00000004933.18_2	chr10	+	1837	11	NIC	ENSMUSG00000004933.18	novel	2228	13	NA	NA	21	-2	intron_retention	FALSE	canonical	2	6	junction_6	3.13687742827162	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTGTACAACTGTCTGA	NA	False	NA	NA	False	CATAAA	-14	NA	81093302	81098807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_81093409_81094313_81094374_81095010_81095122_81095216_81095333_81095420_81095641_81095922_81096017_81096741_81096808_81097276_81097377_81097464_81097991_81098281_81098369_81098456
ENSMUSG00000004933.18_3	chr10	+	1825	13	FSM	ENSMUSG00000004933.18	ENSMUST00000105328.10	2228	13	12	391	6	-1	multi-exon	FALSE	canonical	2	5	junction_9	3.36237350030534	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGTACAACTGTCTGAT	NA	False	NA	NA	False	CATAAA	-15	NA	81093144	81098808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81093409_81094313_81094374_81095010_81095122_81095216_81095333_81095420_81095641_81095922_81096017_81096741_81096808_81097276_81097377_81097464_81097550_81097628_81097703_81097794_81097991_81098281_81098369_81098456
ENSMUSG00000004934.15_0	chr10	-	2340	11	FSM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	188	43	-21	-43	multi-exon	FALSE	canonical	3	608	junction_2	40.6104666311531	1077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAAATGAACGAA	NA	False	NA	-41	True	TTTAAA	-6	NA	81003569	80989142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
ENSMUSG00000004934.15_7	chr10	-	2237	10	ISM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	3785	43	3576	-43	3prime_fragment	FALSE	canonical	3	608	junction_2	42.6226624933813	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAAATGAACGAA	1382	False	NA	-41	True	TTTAAA	-6	NA	80999972	80989142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618
ENSMUSG00000004936.9_0	chr9	-	2379	11	FSM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	34	23	34	-23	multi-exon	FALSE	canonical	3	469	junction_6	51.6454257412987	862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAGGGACAAGAGA	NA	False	NA	-36	True	AATAAA	-15	NA	64160879	64093074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
ENSMUSG00000004936.9_3	chr9	-	1944	10	ISM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	39072	23	-18881	-23	3prime_fragment	TRUE	canonical	3	469	junction_6	48.4767985741633	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAGGGACAAGAGA	NA	False	NA	-36	True	AATAAA	-15	NA	64121841	64093074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680
ENSMUSG00000004937.7_1	chr10	-	1963	12	FSM	ENSMUSG00000004937.7	ENSMUST00000005067.6	1969	12	6	0	6	0	multi-exon	FALSE	canonical	3	182	junction_9	245.943486083912	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTCTGCTTCCTGTGT	4778	False	NA	-11	True	AATAAA	-17	NA	80896006	80879908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886921_80887056_80887164_80887949_80888086_80895961
ENSMUSG00000004937.7_2	chr10	-	1953	12	FSM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	13	-2	13	0	multi-exon	FALSE	canonical	3	688	junction_11	105.465203223192	1011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTCTGCTTCCTGTGT	4785	False	NA	-11	True	AATAAA	-17	NA	80895999	80879908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
ENSMUSG00000004937.7_3	chr10	-	2138	12	NIC	ENSMUSG00000004937.7	novel	1969	12	NA	NA	4	0	combination_of_known_junctions	TRUE	canonical	3	99	junction_11	260.894741448927	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTCTGCTTCCTGTGT	4810	False	NA	-11	True	AATAAA	-17	NA	80895974	80879908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895751
ENSMUSG00000004937.7_7	chr10	-	1915	11	ISM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	7925	0	-2205	0	3prime_fragment	FALSE	canonical	3	867	junction_9	67.5917154686874	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTCTGCTTCCTGT	NA	False	NA	-13	True	AATAAA	-15	NA	80888087	80879910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949
ENSMUSG00000004945.16_0	chr17	-	940	4	FSM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	7	1	7	-1	multi-exon	FALSE	canonical	3	675	junction_1	16.0485374896143	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCGGGGGCGTGTGTGTCT	3475	False	NA	-9	True	NA	NA	NA	5490511	5461145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_5461743_5483716_5483855_5489806_5489908_5490407
ENSMUSG00000004945.16_3	chr17	-	486	1	ISM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	28888	0	28888	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGGGGCGTGTGTGTCTG	NA	False	NA	-8	True	NA	NA	NA	5461630	5461144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_5461100_5461600
ENSMUSG00000004945.16_7	chr17	-	600	3	FSM	ENSMUSG00000004945.16	ENSMUST00000185896.2	780	3	6	174	6	-174	multi-exon	FALSE	canonical	3	677	junction_2	16.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACTTTGTATATTGCTT	3461	False	NA	NA	False	AATAAA	-14	NA	5490525	5483473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_5483855_5489806_5489908_5490407
ENSMUSG00000004947.16_0	chr5	+	2465	10	FSM	ENSMUSG00000004947.16	ENSMUST00000111145.10	2493	10	28	0	-5	0	multi-exon	FALSE	canonical	3	84	junction_5	18.5279235376575	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCATCTGTTGGGAAG	8498	False	NA	8	True	AATAAA	-13	NA	136023692	136061718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
ENSMUSG00000004947.16_1	chr5	+	2609	11	FSM	ENSMUSG00000004947.16	ENSMUST00000111142.9	2650	11	33	8	-11	0	multi-exon	TRUE	canonical	3	47	junction_6	35.5758344947803	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCATCTGTTGGGAAG	8492	False	NA	8	True	AATAAA	-13	NA	136023686	136061718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136055323_136055462_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
ENSMUSG00000004948.13_0	chr5	+	1245	8	FSM	ENSMUSG00000004948.13	ENSMUST00000005073.13	1323	8	75	3	6	-3	multi-exon	TRUE	canonical	3	12	junction_4	3.97953950776689	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTCTGAGTGTGGTTTA	NA	False	NA	NA	False	AATAAA	-10	NA	136009027	136017475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136009297_136011492_136011612_136013015_136013120_136013201_136013386_136014398_136014517_136016108_136016201_136016325_136016463_136017253
ENSMUSG00000004951.11_0	chr5	+	814	3	FSM	ENSMUSG00000004951.11	ENSMUST00000005077.7	903	3	83	6	-16	-4	multi-exon	FALSE	canonical	3	2181	junction_2	11	707	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCGTCTGACTCCAGAG	NA	False	NA	1	True	AATAAA	-19	NA	135916855	135918411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135917289_135917902_135917967_135918094
ENSMUSG00000004952.14_0	chr5	+	2876	21	FSM	ENSMUSG00000004952.14	ENSMUST00000042135.14	2914	21	34	4	-4	1	multi-exon	FALSE	canonical	3	36	junction_7	10.6273232754067	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATGCTGAGGTGTTGGGT	2186	False	NA	NA	False	AATAAA	-16	NA	136112803	136140710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130249_136130478_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
ENSMUSG00000004952.14_24	chr5	+	1394	9	ISM	ENSMUSG00000004952.14	ENSMUST00000152723.8	3030	20	18355	-1	-1521	1	3prime_fragment	FALSE	canonical	3	57	junction_7	7.36439916082772	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATGCTGAGGTGTTGGGT	NA	False	NA	NA	False	AATAAA	-16	NA	136131226	136140710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
ENSMUSG00000004952.14_4	chr5	+	3106	20	FSM	ENSMUSG00000004952.14	ENSMUST00000135344.8	3057	20	-48	-1	-4	1	multi-exon	FALSE	canonical	3	36	junction_7	10.66669552166	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATGCTGAGGTGTTGGGT	2186	False	NA	NA	False	AATAAA	-16	NA	136112803	136140710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
ENSMUSG00000004952.14_6	chr5	+	3513	19	NIC	ENSMUSG00000004952.14	novel	3396	20	NA	NA	-6	-6	intron_retention	TRUE	canonical	3	36	junction_7	10.2607967827691	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCCGCAATGCTGAGGT	2184	False	NA	NA	False	AATAAA	-9	NA	136112801	136140703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
ENSMUSG00000004980.17_0	chr6	-	3497	10	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	2	-4	intron_retention	FALSE	canonical	3	5712	junction_9	757.172925761462	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAAATTACTTGGTGTAA	NA	False	NA	-28	True	AATAAA	-10	NA	51446823	51438107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUSG00000004980.17_17	chr6	-	3015	11	NIC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	2	0	intron_retention	FALSE	canonical	3	615	junction_1	2007.26311180174	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	-24	True	AATAAA	-14	NA	51446823	51438103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_51438414_51438899_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUSG00000004980.17_20	chr6	-	1581	10	FSM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	-71	8	2	-8	multi-exon	FALSE	canonical	3	933	junction_3	2022.94680547408	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAAATTGTGTAATTAT	NA	False	NA	-22	True	AATAAA	-9	NA	51446823	51439747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUSG00000004980.17_7	chr6	-	1522	11	NIC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	499	junction_1	2039.79651926363	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATTACTTGGTGTAATG	NA	False	NA	-26	True	AATAAA	-12	NA	51446823	51438105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUSG00000004980.17_87	chr6	-	1738	12	FSM	ENSMUSG00000004980.17	ENSMUST00000114459.8	1728	12	-18	8	1	-8	multi-exon	FALSE	canonical	3	874	junction_11	2433.70552759395	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAAATTGTGTAATTAT	NA	False	NA	-22	True	AATAAA	-9	NA	51446824	51439747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
ENSMUSG00000004980.17_9	chr6	-	1701	11	FSM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	-71	8	2	-8	multi-exon	FALSE	canonical	3	5712	junction_10	720.046137410652	4217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAAATTGTGTAATTAT	NA	False	NA	-22	True	AATAAA	-9	NA	51446823	51439747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUSG00000004994.13_0	chr8	-	1604	10	FSM	ENSMUSG00000004994.13	ENSMUST00000098578.10	2119	10	10	505	0	1	multi-exon	FALSE	canonical	3	143	junction_9	31.8437543540021	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTTGTTTCTAAACTC	NA	False	NA	-21	True	ATTAAA	-16	NA	84996999	84984928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
ENSMUSG00000004994.13_1	chr8	-	1580	9	ISM	ENSMUSG00000004994.13	ENSMUST00000098578.10	2119	10	3303	503	-239	3	3prime_fragment	FALSE	canonical	3	198	junction_2	18.3847763108502	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTGTTTCTAAACTCAT	NA	False	NA	-19	True	ATTAAA	-18	NA	84993706	84984926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464
ENSMUSG00000004994.13_10	chr8	-	1500	8	ISM	ENSMUSG00000004994.13	ENSMUST00000005120.12	1441	9	-23	1331	0	-517	5prime_fragment	FALSE	canonical	3	143	junction_7	34.7521838984874	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTCTAGGGCCCCAGA	NA	False	NA	NA	False	NA	NA	NA	84996999	84986260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
ENSMUSG00000004994.13_4	chr8	-	1465	9	FSM	ENSMUSG00000004994.13	ENSMUST00000005120.12	1441	9	-23	-1	0	1	multi-exon	FALSE	canonical	3	13	junction_1	76.6823806359714	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTTGTTTCTAAACTC	NA	False	NA	-21	True	ATTAAA	-16	NA	84996999	84984928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84985556_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
ENSMUSG00000004996.10_8	chr8	-	1199	5	FSM	ENSMUSG00000004996.10	ENSMUST00000126435.8	2819	5	38	1582	38	-466	multi-exon	FALSE	canonical	3	192	junction_2	18.1159460144923	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAAAGTTCATCTTCAC	7004	False	NA	-8	True	AATAAA	-14	NA	84983915	84978116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84978341_84980491_84980717_84980804_84980982_84982872_84983049_84983518
ENSMUSG00000005034.16_0	chr3	-	4333	10	FSM	ENSMUSG00000005034.16	ENSMUST00000102515.10	4347	10	3	11	3	-11	multi-exon	FALSE	canonical	3	142	junction_1	11.8415464455544	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGATAAAAGCTATTGAG	2701	False	NA	NA	False	ATTAAA	-9	NA	146518712	146435339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_146438469_146443688_146443854_146451014_146451138_146452354_146452451_146453675_146453803_146456237_146456321_146457201_146457301_146461386_146461516_146463461_146463524_146518392
ENSMUSG00000005034.16_2	chr3	-	2000	1	ISM	ENSMUSG00000005034.16	ENSMUST00000102515.10	4347	10	81376	11	14043	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGATAAAAGCTATTGAG	NA	False	NA	NA	False	ATTAAA	-9	NA	146437339	146435339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_146435300_146437300
ENSMUSG00000005043.14_2	chr11	-	2140	1	ISM	ENSMUSG00000005043.14	ENSMUST00000136523.8	4191	8	9715	223	2074	-150	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTGCCAGCTGTTGCC	NA	False	NA	NA	False	NA	NA	NA	119236613	119234473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_119234500_119236600
ENSMUSG00000005043.14_8	chr11	-	4171	8	FSM	ENSMUSG00000005043.14	ENSMUST00000005173.11	4357	8	16	170	-10	-154	multi-exon	FALSE	canonical	2	7	junction_4	3.49927106111883	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAAACAGTGCCAGCTGT	6152	False	NA	NA	False	NA	NA	NA	119246346	119234477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_119237664_119238513_119238718_119240365_119240448_119240802_119240960_119241227_119241379_119241749_119241856_119243471_119243633_119246222
ENSMUSG00000005045.17_13	chr4	+	2249	1	ISM	ENSMUSG00000005045.17	ENSMUST00000030775.12	9486	42	49286	9	15795	4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCGCTGTAGTTCTTAGCC	NA	False	NA	NA	False	AATAAA	-19	NA	152472393	152474642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152472400_152474600
ENSMUSG00000005045.17_18	chr4	+	4802	33	ISM	ENSMUSG00000005045.17	ENSMUST00000030775.12	9486	42	24282	2946	-9209	-2933	3prime_fragment	TRUE	canonical	2	3	junction_4	3.08980177357707	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTCAGATTCACGACAC	NA	False	NA	NA	False	GATAAA	-19	NA	152447389	152471705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152447549_152447731_152447944_152450583_152450716_152450817_152450927_152451738_152451931_152452285_152452487_152454961_152455100_152455184_152455307_152456034_152456209_152456540_152456683_152457902_152458035_152458788_152458907_152459533_152459659_152460592_152460825_152461036_152461148_152461425_152461599_152462072_152462248_152462634_152462728_152462914_152463004_152463186_152463321_152463821_152463967_152464276_152464437_152464904_152464985_152465603_152465737_152466791_152466870_152467348_152467487_152467726_152467836_152468580_152468714_152468941_152469138_152469889_152470054_152470180_152470296_152470405_152470460_152471371
ENSMUSG00000005054.8_0	chr10	+	543	3	FSM	ENSMUSG00000005054.8	ENSMUST00000005185.8	603	3	57	3	57	-3	multi-exon	TRUE	canonical	3	3631	junction_2	117.5	589	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAATTGTGTCCTTAGT	NA	False	NA	20	True	AATATA	-15	NA	78261559	78263453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_78261692_78262760_78262863_78263144
ENSMUSG00000005057.14_0	chr5	-	2855	9	FSM	ENSMUSG00000005057.14	ENSMUST00000005188.14	2848	9	-11	4	-11	-4	multi-exon	TRUE	canonical	1	1	junction_1	2.73861278752583	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTACCCCCTGCTCTCCTGT	2491	False	NA	NA	False	ATTAAA	-16	NA	136273768	136247006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_136248007_136248495_136248668_136250701_136250911_136253008_136253177_136253258_136253351_136254057_136254150_136256220_136256323_136260506_136261241_136273482
ENSMUSG00000005057.14_1	chr5	-	1843	6	FSM	ENSMUSG00000005057.14	ENSMUST00000196447.2	1783	6	-56	-4	10	4	multi-exon	FALSE	canonical	2	3	junction_1	2.0591260281974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGAACTTTTGCTGGGT	2512	False	NA	NA	False	NA	NA	NA	136273747	136252618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_136253177_136253258_136253351_136254057_136254150_136256220_136256323_136260506_136261241_136273482
ENSMUSG00000005069.13_0	chr6	-	3033	15	FSM	ENSMUSG00000005069.13	ENSMUST00000080557.12	3073	15	13	27	13	-12	multi-exon	FALSE	canonical	3	93	junction_8	13.6099078555564	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAGAATAAACTGGACTG	NA	False	NA	-28	True	AATAAA	-17	NA	124392013	124373802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
ENSMUSG00000005069.13_1	chr6	-	3143	16	FSM	ENSMUSG00000005069.13	ENSMUST00000035861.6	3139	16	-16	12	14	-12	multi-exon	FALSE	canonical	3	29	junction_9	30.6939009504422	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAGAATAAACTGGACTG	NA	False	NA	-28	True	AATAAA	-17	NA	124392012	124373802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381091_124381203_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
ENSMUSG00000005069.13_12	chr6	-	1721	4	FSM	ENSMUSG00000005069.13	ENSMUST00000156415.2	951	4	297	-1067	297	-12	multi-exon	FALSE	canonical	3	121	junction_3	9.7410927974683	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAGAATAAACTGGACTG	NA	False	NA	-28	True	AATAAA	-17	NA	124376276	124373802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206
ENSMUSG00000005069.13_13	chr6	-	3030	15	NNC	ENSMUSG00000005069.13	novel	3073	15	NA	NA	-14	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	33.2848712339589	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGAATAAACTGGACTGA	NA	False	NA	-27	True	AATAAA	-18	NA	124392010	124373801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588_124381680_124382125_124382232_124390227_124390359_124390527_124390661_124390965_124391002_124391245_124391410_124391931
ENSMUSG00000005069.13_3	chr6	-	1051	1	ISM	ENSMUSG00000005069.13	ENSMUST00000112532.8	3148	16	17176	25	1723	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATAAACTGGACTGACG	NA	False	NA	-25	True	AATAAA	-20	NA	124374850	124373799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124373800_124374800
ENSMUSG00000005078.17_16	chr12	+	1788	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	91	-587	91	-13	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTGTAAAATAACTCCATG	NA	False	NA	1	True	AATAAA	-7	NA	72132721	72148222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUSG00000005078.17_18	chr12	+	1767	7	FSM	ENSMUSG00000005078.17	ENSMUST00000117449.8	1874	7	100	7	100	-7	multi-exon	FALSE	canonical	3	133	junction_1	199.890525593942	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAACTCCATGTTCTGA	NA	False	NA	7	True	AATAAA	-13	NA	72132730	72148228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_72132958_72136106_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUSG00000005102.14_0	chr2	+	5197	39	FSM	ENSMUSG00000005102.14	ENSMUST00000005233.12	5212	39	10	5	10	-2	multi-exon	FALSE	canonical	3	66	junction_24	13.8429307338417	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATATCTGCTGTTTTCCAT	NA	False	NA	4	True	AATAAA	-10	NA	118219108	118305710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118219334_118231015_118231129_118235527_118235631_118238832_118238986_118241363_118241445_118243415_118243565_118247707_118247824_118251198_118251354_118252443_118252980_118257045_118257153_118258308_118258467_118261276_118261705_118262691_118262762_118265103_118265188_118266643_118266767_118269446_118269552_118271642_118271701_118272495_118272576_118273605_118273708_118276740_118276795_118278756_118278994_118280790_118280867_118281892_118282015_118285308_118285359_118286256_118286426_118287606_118287724_118288306_118288373_118292207_118292379_118292704_118292840_118293144_118293253_118294426_118294556_118296833_118296921_118298642_118298756_118300724_118300784_118301316_118301415_118302370_118302440_118303122_118303168_118304512_118304632_118305483
ENSMUSG00000005102.14_1	chr2	+	2990	19	ISM	ENSMUSG00000005102.14	ENSMUST00000005233.12	5212	39	9	31965	9	-9021	5prime_fragment	FALSE	canonical	3	81	junction_8	8.9504810547317	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTCGTATGGAGATCAGA	NA	False	NA	4	True	AATACA	-15	NA	118219107	118273750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_118219334_118231015_118231129_118235527_118235631_118238832_118238986_118241363_118241445_118243415_118243565_118247707_118247824_118251198_118251354_118252443_118252980_118257045_118257153_118258308_118258467_118261276_118261705_118262691_118262762_118265103_118265188_118266643_118266767_118269446_118269552_118271642_118271701_118272495_118272576_118273605
ENSMUSG00000005103.13_4	chr5	-	2973	15	FSM	ENSMUSG00000005103.13	ENSMUST00000005234.13	3089	15	113	3	-58	-3	multi-exon	FALSE	canonical	0	0	junction_6	233.56139122164	1826	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTGGATCACTGGCTC	NA	False	NA	-10	True	ATTAAA	-13	NA	38719036	38684158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692684_38694481_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718545_38718858
ENSMUSG00000005107.14_3	chr5	-	3142	12	FSM	ENSMUSG00000005107.14	ENSMUST00000067886.12	3602	12	95	365	-29	1	multi-exon	TRUE	canonical	1	1	junction_11	4.00619355209649	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATTATTCTGCCTTGGCT	NA	False	NA	NA	False	NA	NA	NA	38637554	38506980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_38508681_38520185_38520314_38537260_38537337_38539385_38539488_38549056_38549168_38556044_38556233_38574517_38574651_38593882_38594029_38597992_38598118_38610444_38610606_38634737_38634837_38637381
ENSMUSG00000005107.14_5	chr5	-	2618	8	ISM	ENSMUSG00000005107.14	ENSMUST00000067886.12	3602	12	43579	373	4102	-7	3prime_fragment	FALSE	canonical	1	2	junction_4	4.1206300291017	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGCCTATCATTATTCTG	NA	False	NA	NA	False	NA	NA	NA	38594070	38506988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_38508681_38520185_38520314_38537260_38537337_38539385_38539488_38549056_38549168_38556044_38556233_38574517_38574651_38593882
ENSMUSG00000005124.11_0	chr15	+	1085	1	ISM	ENSMUSG00000005124.11	ENSMUST00000005255.9	5097	5	30795	2	12804	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCTTTGATTTGGATTT	NA	False	NA	NA	False	AATAAA	-15	NA	66793963	66795048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_66794000_66795000
ENSMUSG00000005125.14_0	chr15	-	2884	16	FSM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	1	4	0	-4	multi-exon	FALSE	canonical	2	22	junction_13	7.67854152818099	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTTGTGTCTTTTCCT	NA	False	NA	-4	True	AATAAA	-14	NA	66841488	66801170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832402_66841352
ENSMUSG00000005125.14_10	chr15	-	1391	1	ISM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	38928	4	3757	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTTGTGTCTTTTCCT	9639	False	NA	-4	True	AATAAA	-14	NA	66802561	66801170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_66801200_66802600
ENSMUSG00000005125.14_16	chr15	-	2385	11	ISM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	24821	4	3660	-4	3prime_fragment	FALSE	canonical	3	30	junction_8	6.91736944220851	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTTGTGTCTTTTCCT	NA	False	NA	-4	True	AATAAA	-14	NA	66816668	66801170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624
ENSMUSG00000005125.14_4	chr15	-	2947	16	NIC	ENSMUSG00000005125.14	novel	2889	16	NA	NA	0	-4	intron_retention	FALSE	canonical	1	1	junction_15	12.2245654319489	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTTGTGTCTTTTCCT	NA	False	NA	-4	True	AATAAA	-14	NA	66841488	66801170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832465_66841352
ENSMUSG00000005142.11_0	chr8	+	3125	24	FSM	ENSMUSG00000005142.11	ENSMUST00000034121.11	3822	24	-1	698	-1	-698	multi-exon	FALSE	canonical	3	158	junction_7	31.1019422681999	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCAGGTCACCCAGTGCA	NA	False	NA	12	True	ATTAAA	-14	NA	85809942	85824213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
ENSMUSG00000005142.11_14	chr8	+	3007	23	NIC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	-1	-699	combination_of_known_splicesites	FALSE	canonical	2	5	junction_6	54.501876531497	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCAGGTCACCCAGTGC	NA	False	NA	11	True	ATTAAA	-13	NA	85809942	85824212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
ENSMUSG00000005142.11_15	chr8	+	3020	23	NIC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	0	-699	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	54.9261901431035	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCAGGTCACCCAGTGC	NA	False	NA	11	True	ATTAAA	-13	NA	85809943	85824212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85810118_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
ENSMUSG00000005148.9_1	chr14	+	3343	4	FSM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	-1	10	-1	-10	multi-exon	FALSE	canonical	3	3464	junction_1	114.952163963972	5523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGATGTATGTGGTGCC	NA	False	NA	12	True	AATAAA	-8	NA	99536125	99552462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_99536659_99538816_99539691_99540853_99540914_99550586
ENSMUSG00000005148.9_32	chr14	+	1400	1	ISM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	14937	9	14474	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATGTATGTGGTGCCT	NA	False	NA	13	True	AATAAA	-9	NA	99551063	99552463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_99551100_99552500
ENSMUSG00000005150.17_1	chr8	-	1181	9	FSM	ENSMUSG00000005150.17	ENSMUST00000093357.12	1238	9	50	7	7	-4	multi-exon	FALSE	canonical	3	89	junction_6	13.3410784796432	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCAATCTTCTTAGTCTT	NA	False	NA	-9	True	AATAAA	-28	NA	85807325	85801670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806467_85806748_85806855_85806941_85807063_85807141
ENSMUSG00000005150.17_10	chr8	-	1548	7	FSM	ENSMUSG00000005150.17	ENSMUST00000136696.8	1561	7	11	2	11	0	multi-exon	FALSE	canonical	3	115	junction_3	8.39477350630869	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTCTTAGTCTTCATTC	NA	False	NA	-4	True	AATAAA	-33	NA	85807321	85801665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85801973_85802451_85802567_85802652_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
ENSMUSG00000005150.17_13	chr8	-	979	8	ISM	ENSMUSG00000005150.17	ENSMUST00000093357.12	1238	9	316	22	202	-5	3prime_fragment	FALSE	canonical	3	89	junction_6	13.4665117523251	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCCTCAGTCTTTACC	NA	False	NA	-24	True	AATAAA	-13	NA	85807059	85801685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806467_85806748_85806855_85806941
ENSMUSG00000005150.17_4	chr8	-	1468	8	FSM	ENSMUSG00000005150.17	ENSMUST00000131909.8	1406	8	-67	5	4	-2	multi-exon	FALSE	canonical	3	115	junction_4	7.90763000177031	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATCTTCTTAGTCTTCA	NA	False	NA	-7	True	AATAAA	-30	NA	85807328	85801668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
ENSMUSG00000005150.17_5	chr8	-	1175	8	NIC	ENSMUSG00000005150.17	novel	1238	9	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	43.8745893637392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATCTTCTTAGTCTTCATT	NA	False	NA	-5	True	AATAAA	-32	NA	85807321	85801666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806321_85806689_85806855_85806941_85807063_85807141
ENSMUSG00000005161.16_0	chr8	+	897	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	83	520	0	3	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	1227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGTGTTGGTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	85696322	85700943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUSG00000005161.16_2	chr8	+	984	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109734.8	1612	6	108	520	1	3	multi-exon	FALSE	canonical	3	308	junction_1	1434.62463383284	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGTGTTGGTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	85696323	85700943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85696392_85696780_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUSG00000005198.16_1	chr11	-	3227	11	ISM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	17491	7	1425	-7	3prime_fragment	FALSE	canonical	3	338	junction_8	32.466752224391	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAAGTCTGTATGTGTA	NA	False	NA	-10	True	AATAAA	-15	NA	69631972	69624829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824
ENSMUSG00000005198.16_16	chr11	-	4612	19	ISM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	14416	4	-1650	-4	3prime_fragment	FALSE	canonical	2	202	junction_15	54.259891286927	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCTGTATGTGTACTG	NA	False	NA	-7	True	AATAAA	-18	NA	69635047	69624826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634628_69634798_69634876
ENSMUSG00000005198.16_17	chr11	-	2749	9	ISM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	18617	7	2551	-7	3prime_fragment	FALSE	canonical	3	338	junction_8	33.71178391898	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAAGTCTGTATGTGTA	492	False	NA	-10	True	AATAAA	-15	NA	69630846	69624829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704
ENSMUSG00000005198.16_19	chr11	-	3468	13	ISM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	16720	7	654	-7	3prime_fragment	FALSE	canonical	3	309	junction_11	40.0072042123527	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAAGTCTGTATGTGTA	NA	False	NA	-10	True	AATAAA	-15	NA	69632743	69624829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666
ENSMUSG00000005198.16_20	chr11	-	4105	16	ISM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	15249	7	-817	-7	3prime_fragment	FALSE	canonical	2	202	junction_15	55.7216893737678	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAAGTCTGTATGTGTA	NA	False	NA	-10	True	AATAAA	-15	NA	69634214	69624829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512_69633736_69634079
ENSMUSG00000005198.16_39	chr11	-	3660	14	ISM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	16167	7	101	-7	3prime_fragment	FALSE	canonical	3	309	junction_11	38.4955234468086	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAAGTCTGTATGTGTA	NA	False	NA	-10	True	AATAAA	-15	NA	69633296	69624829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199
ENSMUSG00000005198.16_4	chr11	-	6727	29	FSM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	6	7	6	-7	multi-exon	FALSE	canonical	2	202	junction_15	57.5883527056204	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAAGTCTGTATGTGTA	NA	False	NA	-10	True	AATAAA	-15	NA	69649457	69624829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634628_69634798_69634876_69635087_69635422_69635634_69635745_69635871_69636394_69636528_69636747_69636969_69637092_69637255_69637523_69637806_69637930_69638105_69638201_69638339_69638806_69638940_69648956
ENSMUSG00000005198.16_5	chr11	-	3860	15	ISM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	15840	5	-226	-5	3prime_fragment	FALSE	canonical	3	309	junction_11	37.111800202708	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGTCTGTATGTGTACT	NA	False	NA	-8	True	AATAAA	-17	NA	69633623	69624827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512
ENSMUSG00000005204.13_0	chr11	-	2351	11	FSM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	-44	6	-44	0	multi-exon	FALSE	canonical	3	762	junction_10	82.7371742326265	1123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATGCAAGTGGTGGTC	8486	False	NA	-11	True	AATAAA	-11	NA	69572716	69563946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
ENSMUSG00000005204.13_12	chr11	-	2206	11	FSM	ENSMUSG00000005204.13	ENSMUST00000066760.8	2219	11	13	0	13	0	multi-exon	FALSE	canonical	3	37	junction_10	281.644616493907	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATGCAAGTGGTGGTC	8305	False	NA	-11	True	AATAAA	-11	NA	69572897	69563946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572814
ENSMUSG00000005204.13_4	chr11	-	1871	10	ISM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	1251	3	1251	-2	3prime_fragment	FALSE	canonical	3	868	junction_9	62.3332343037439	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAAGTGGTGGTCTTC	9781	False	NA	-8	True	AATAAA	-14	NA	69571421	69563943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968
ENSMUSG00000005225.16_0	chr6	+	6621	14	FSM	ENSMUSG00000005225.16	ENSMUST00000119706.8	6739	14	88	30	88	-30	multi-exon	FALSE	canonical	1	70	junction_3	58.2353925611012	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATTTTATTAAACGTTCT	NA	False	NA	2	True	AATAAA	-12	NA	54572183	54622794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_54572457_54590076_54590194_54592199_54592356_54593617_54593743_54596178_54596338_54597256_54597298_54599105_54599264_54601059_54601217_54601537_54601624_54605830_54605890_54606804_54606936_54607488_54607560_54612694_54612757_54617768
ENSMUSG00000005225.16_27	chr6	+	3092	1	ISM	ENSMUSG00000005225.16	ENSMUST00000119706.8	6739	14	47615	22	39579	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAACGTTCTTCAAAGGG	NA	False	NA	10	True	AATAAA	-20	NA	54619710	54622802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_54619700_54622800
ENSMUSG00000005233.17_1	chr2	-	1328	7	FSM	ENSMUSG00000005233.17	ENSMUST00000005365.15	1352	7	23	1	8	0	multi-exon	FALSE	canonical	3	811	junction_6	34.6121365997536	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTTGTAACTCTCTCTT	NA	False	NA	-11	True	NA	NA	NA	69036515	69024239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036407
ENSMUSG00000005233.17_2	chr2	-	1493	7	FSM	ENSMUSG00000005233.17	ENSMUST00000112320.8	1527	7	33	1	21	0	multi-exon	FALSE	canonical	3	49	junction_6	307.891214554751	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTTGTAACTCTCTCTT	NA	False	NA	-11	True	NA	NA	NA	69036446	69024239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036173
ENSMUSG00000005237.15_5	chr11	-	2817	6	NIC	ENSMUSG00000005237.15	novel	13704	86	NA	NA	-12141	-7725	intron_retention	FALSE	canonical	1	1	junction_5	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGTCCTTTTTTATTA	1505	False	NA	NA	False	ATTAAA	-11	NA	69368661	69363160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69364304_69364545_69364699_69365025_69365154_69366291_69366473_69367153_69368175_69368470
ENSMUSG00000005251.16_1	chr16	-	3559	8	FSM	ENSMUSG00000005251.16	ENSMUST00000019386.10	3591	8	29	3	29	-3	multi-exon	FALSE	canonical	3	41	junction_1	9.512612465478	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCGCAGACTATTATTT	NA	False	NA	-1	True	AATAAA	-19	NA	97564958	97543135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_97545445_97547059_97547325_97548492_97548597_97549222_97549382_97551292_97551343_97552693_97552843_97556267_97556560_97564727
ENSMUSG00000005262.14_0	chr16	+	1963	12	FSM	ENSMUSG00000005262.14	ENSMUST00000005394.13	1996	12	20	13	-7	-8	multi-exon	FALSE	canonical	3	393	junction_10	35.0072011482124	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTCGCCTCTAGTTTGA	NA	False	NA	-3	True	AATAAA	-7	NA	18631063	18653998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ENSMUSG00000005262.14_2	chr16	+	1931	12	NIC	ENSMUSG00000005262.14	novel	1996	12	NA	NA	4	-3	combination_of_known_junctions	FALSE	canonical	3	52	junction_2	122.971810248132	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCCTCTAGTTTGATATGG	NA	False	NA	2	True	AATAAA	-12	NA	18631074	18654003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_18631168_18633579_18633687_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ENSMUSG00000005267.14_0	chr11	-	5008	6	NIC	ENSMUSG00000005267.14	novel	1605	8	NA	NA	6	-239	intron_retention	FALSE	canonical	0	0	junction_5	1.16619037896906	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAATAACAGTACAGAATC	NA	False	NA	NA	False	TTTAAA	-9	NA	62622705	62602329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_62606203_62615622_62615710_62616073_62616201_62618375_62618480_62619107_62619712_62622492
ENSMUSG00000005299.7_2	chr5	-	2519	14	FSM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	101	2652	-2	209	multi-exon	FALSE	canonical	3	324	junction_8	46.4800014258216	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATGAAGCAATTTTTAAT	NA	False	NA	NA	False	AATAAA	-13	NA	33940060	33899668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_33899957_33900985_33901125_33902359_33902548_33903583_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835_33909956_33918066_33918271_33918923_33919062_33919802_33919947_33926704_33927156_33935951_33936013_33939817
ENSMUSG00000005299.7_3	chr5	-	2037	12	ISM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	13186	2650	823	211	3prime_fragment	FALSE	canonical	3	324	junction_8	48.0321861785502	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAGCAATTTTTAATTT	9352	False	NA	NA	False	AATAAA	-15	NA	33926975	33899666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_33899957_33900985_33901125_33902359_33902548_33903583_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835_33909956_33918066_33918271_33918923_33919062_33919802_33919947_33926704
ENSMUSG00000005312.16_2	chr13	-	3568	10	FSM	ENSMUSG00000005312.16	ENSMUST00000076454.8	3561	10	-7	0	-7	0	multi-exon	FALSE	canonical	3	487	junction_3	294.557588324433	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTTGGTTGTCTCGCCTC	1754	False	NA	-9	True	AATAAA	-13	NA	58363440	58323976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
ENSMUSG00000005312.16_3	chr13	-	3652	11	FSM	ENSMUSG00000005312.16	ENSMUST00000058735.12	3686	11	27	7	-7	0	multi-exon	FALSE	canonical	3	817	junction_3	227.671803260746	1623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTTGGTTGTCTCGCCTC	1754	False	NA	-9	True	AATAAA	-13	NA	58363440	58323976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58328635_58328720_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
ENSMUSG00000005320.10_0	chr13	+	3130	18	FSM	ENSMUSG00000005320.10	ENSMUST00000005452.6	3324	18	168	26	168	-26	multi-exon	FALSE	canonical	2	5	junction_4	3.40364144505634	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAATCTCTGTGTGCCT	NA	False	NA	NA	False	TATAAA	-12	NA	55300620	55316546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55300741_55303250_55303385_55304043_55304308_55304398_55304480_55304586_55304754_55306906_55307031_55307735_55307927_55308061_55308201_55308928_55309123_55309206_55309353_55309434_55309557_55313702_55313814_55313908_55314100_55314670_55314794_55314900_55314972_55315212_55315351_55315618_55315725_55315838
ENSMUSG00000005320.10_10	chr13	+	1153	2	ISM	ENSMUSG00000005320.10	ENSMUST00000005452.6	3324	18	14673	26	11196	-26	intron_retention	FALSE	canonical	3	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAATCTCTGTGTGCCT	NA	False	NA	NA	False	TATAAA	-12	NA	55315125	55316546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_55315351_55315618
ENSMUSG00000005320.10_5	chr13	+	3021	17	ISM	ENSMUSG00000005320.10	ENSMUST00000005452.6	3324	18	2791	22	-252	-22	3prime_fragment	FALSE	canonical	2	5	junction_3	3.50836055017155	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTCTGTGTGCCTGGTG	NA	False	NA	NA	False	TATAAA	-16	NA	55303243	55316550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_55303385_55304043_55304308_55304398_55304480_55304586_55304754_55306906_55307031_55307735_55307927_55308061_55308201_55308928_55309123_55309206_55309353_55309434_55309557_55313702_55313814_55313908_55314100_55314670_55314794_55314900_55314972_55315212_55315351_55315618_55315725_55315838
ENSMUSG00000005320.10_7	chr13	+	2118	12	ISM	ENSMUSG00000005320.10	ENSMUST00000005452.6	3324	18	7405	26	3928	-26	3prime_fragment	FALSE	canonical	2	7	junction_1	3.66353485083816	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAATCTCTGTGTGCCT	NA	False	NA	NA	False	TATAAA	-12	NA	55307857	55316546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_55307927_55308061_55308201_55308928_55309123_55309206_55309353_55309434_55309557_55313702_55313814_55313908_55314100_55314670_55314794_55314900_55314972_55315212_55315351_55315618_55315725_55315838
ENSMUSG00000005320.10_8	chr13	+	1992	10	ISM	ENSMUSG00000005320.10	ENSMUST00000005452.6	3324	18	8394	26	4917	-26	3prime_fragment	FALSE	canonical	3	7	junction_6	3.52766841475279	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAATCTCTGTGTGCCT	NA	False	NA	NA	False	TATAAA	-12	NA	55308846	55316546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_55309123_55309206_55309353_55309434_55309557_55313702_55313814_55313908_55314100_55314670_55314794_55314900_55314972_55315212_55315351_55315618_55315725_55315838
ENSMUSG00000005354.17_0	chr15	-	1265	4	FSM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	31	2	-1	-2	multi-exon	FALSE	canonical	3	1083	junction_2	92.120693778446	737	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGGCTGCTGTTCTGTGG	2746	False	NA	-7	True	AATAAA	-17	NA	77813175	77799248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_77800058_77808742_77808867_77811891_77812155_77813106
ENSMUSG00000005355.10_0	chr10	-	2247	7	FSM	ENSMUSG00000005355.10	ENSMUST00000005488.9	2336	7	83	6	83	0	multi-exon	FALSE	canonical	2	2	junction_1	2.21108319357027	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATGTGTTAGAATCTT	NA	False	NA	NA	False	AGTAAA	-18	NA	78554045	78547830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_78549276_78549823_78549928_78550081_78550232_78550768_78550995_78551094_78551245_78551653_78551721_78553940
ENSMUSG00000005360.15_1	chr15	-	3863	10	FSM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	293	7	10	-7	multi-exon	FALSE	canonical	3	39	junction_5	8.52447456836295	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTAATACATTTGTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	8739955	8663614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717771_8717910_8738045_8738324_8739822
ENSMUSG00000005360.15_18	chr15	-	1641	5	FSM	ENSMUSG00000005360.15	ENSMUST00000153455.8	1252	5	-48	-341	17	341	multi-exon	FALSE	canonical	3	13	junction_1	23.8156986040721	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATTTCAGTTTTCCAAT	NA	False	NA	NA	False	ATTAAA	-14	NA	8739948	8709663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_8710661_8717194_8717297_8717771_8717910_8738045_8738324_8739822
ENSMUSG00000005360.15_19	chr15	-	3839	3	FSM	ENSMUSG00000005360.15	ENSMUST00000129325.2	964	3	32	-2907	17	1025	multi-exon	FALSE	canonical	3	60	junction_1	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8739948	8714474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_8717910_8738045_8738324_8739822
ENSMUSG00000005360.15_2	chr15	-	2705	4	ISM	ENSMUSG00000005360.15	ENSMUST00000125997.2	4435	6	8443	-597	184	-5	3prime_fragment	FALSE	canonical	3	51	junction_2	3.68178700572909	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATACATTTGTATGTTA	NA	False	NA	NA	False	AATAAA	-17	NA	8672547	8663612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383
ENSMUSG00000005360.15_3	chr15	-	1254	1	ISM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	75385	2	7868	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACATTTGTATGTTATTT	NA	False	NA	NA	False	AATAAA	-20	NA	8664863	8663609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_8663600_8664900
ENSMUSG00000005360.15_5	chr15	-	3969	11	NIC	ENSMUSG00000005360.15	novel	4163	10	NA	NA	6	-7	combination_of_known_splicesites	FALSE	canonical	1	3	junction_7	19.3225257148231	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTAATACATTTGTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	8739959	8663614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717194_8717297_8717771_8717910_8738045_8738324_8739822
ENSMUSG00000005362.15_0	chr6	-	2060	11	FSM	ENSMUSG00000005362.15	ENSMUST00000013882.10	2072	11	6	6	2	-6	multi-exon	FALSE	canonical	3	47	junction_10	56.1066840937869	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATAGGCTGCTCCTTAAT	NA	False	NA	-39	True	AATAAA	-11	NA	106777020	106757167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772956_106776951
ENSMUSG00000005362.15_2	chr6	-	2064	11	FSM	ENSMUSG00000005362.15	ENSMUST00000113239.10	2084	11	13	7	0	-7	multi-exon	FALSE	canonical	3	188	junction_5	22.0871003076456	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATAGGCTGCTCCTTAA	NA	False	NA	-40	True	AATAAA	-10	NA	106777022	106757168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
ENSMUSG00000005370.5_0	chr17	+	4235	10	FSM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	7	9	7	-9	multi-exon	FALSE	canonical	3	2207	junction_2	252.867310151411	4957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGACCATTTTTCCA	NA	False	NA	22	True	AATAAA	-11	NA	88282496	88298311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
ENSMUSG00000005370.5_104	chr17	+	2727	7	ISM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	10185	9	5544	-9	3prime_fragment	FALSE	canonical	3	2616	junction_4	121.673972383397	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGACCATTTTTCCA	NA	False	NA	22	True	AATAAA	-11	NA	88292674	88298311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
ENSMUSG00000005371.16_0	chr17	-	960	1	ISM	ENSMUSG00000005371.16	ENSMUST00000130379.9	3753	23	73207	3	9161	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTTGTCTGAATTTACC	6142	False	NA	-3	True	AATAAA	-14	NA	88299249	88298289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_88298300_88299200
ENSMUSG00000005371.16_17	chr17	-	2436	12	ISM	ENSMUSG00000005371.16	ENSMUST00000130379.9	3753	23	62192	4	-1854	-4	3prime_fragment	FALSE	canonical	3	79	junction_9	12.4787422549095	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTTGTCTGAATTTAC	NA	False	NA	-4	True	AATAAA	-13	NA	88310264	88298290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694_88303772_88304758_88304845_88304940_88305064_88306960_88307056_88308199_88308286_88310179
ENSMUSG00000005371.16_2	chr17	-	4546	23	FSM	ENSMUSG00000005371.16	ENSMUST00000005504.15	4019	23	-531	4	-531	-4	multi-exon	FALSE	canonical	3	35	junction_20	20.0647711505094	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTTGTCTGAATTTAC	NA	False	NA	-4	True	AATAAA	-13	NA	88373250	88298290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694_88303772_88304758_88304845_88304940_88305064_88306960_88307056_88308199_88308286_88310179_88310398_88316021_88316160_88316243_88316351_88316437_88316550_88316631_88316739_88318363_88318497_88318720_88318805_88319984_88320115_88321833_88321979_88322826_88322909_88323015_88323141_88372436
ENSMUSG00000005371.16_20	chr17	-	2156	9	ISM	ENSMUSG00000005371.16	ENSMUST00000135639.8	2022	12	11072	-552	3358	-7	3prime_fragment	FALSE	canonical	3	83	junction_3	11.4427924913458	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATAATGTTGTCTGAATT	339	False	NA	-7	True	AATAAA	-10	NA	88305052	88298293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694_88303772_88304758_88304845_88304940
ENSMUSG00000005371.16_24	chr17	-	2664	13	ISM	ENSMUSG00000005371.16	ENSMUST00000130379.9	3753	23	56341	3	9	-3	3prime_fragment	FALSE	canonical	3	79	junction_9	11.9512900279984	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTTGTCTGAATTTACC	NA	False	NA	-3	True	AATAAA	-14	NA	88316115	88298289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694_88303772_88304758_88304845_88304940_88305064_88306960_88307056_88308199_88308286_88310179_88310398_88316021
ENSMUSG00000005371.16_3	chr17	-	3371	19	ISM	ENSMUSG00000005371.16	ENSMUST00000130379.9	3753	23	52343	12	-3989	-12	3prime_fragment	FALSE	canonical	3	57	junction_15	16.0016395764872	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGATCATAATGTTGTCT	NA	False	NA	-12	True	AATAAA	-5	NA	88320113	88298298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694_88303772_88304758_88304845_88304940_88305064_88306960_88307056_88308199_88308286_88310179_88310398_88316021_88316160_88316243_88316351_88316437_88316550_88316631_88316739_88318363_88318497_88318720_88318805_88319984
ENSMUSG00000005371.16_35	chr17	-	2009	8	ISM	ENSMUSG00000005371.16	ENSMUST00000135639.8	2022	12	11306	-543	3592	-16	3prime_fragment	FALSE	canonical	3	83	junction_3	11.8769198233294	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTATTAGATCATAATGTT	573	False	NA	-16	True	AATAAA	-1	NA	88304818	88298302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694_88303772_88304758
ENSMUSG00000005371.16_4	chr17	-	3710	22	ISM	ENSMUSG00000005371.16	ENSMUST00000005504.15	4019	23	49603	2	-6992	-2	3prime_fragment	FALSE	canonical	3	35	junction_20	18.7649260318178	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTGTCTGAATTTACCA	NA	False	NA	-2	True	AATAAA	-15	NA	88323116	88298288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694_88303772_88304758_88304845_88304940_88305064_88306960_88307056_88308199_88308286_88310179_88310398_88316021_88316160_88316243_88316351_88316437_88316550_88316631_88316739_88318363_88318497_88318720_88318805_88319984_88320115_88321833_88321979_88322826_88322909_88323015
ENSMUSG00000005371.16_6	chr17	-	4759	23	FSM	ENSMUSG00000005371.16	ENSMUST00000130379.9	3753	23	-1010	4	-747	-4	multi-exon	FALSE	canonical	3	18	junction_20	22.0632542949277	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTTGTCTGAATTTAC	NA	False	NA	-4	True	AATAAA	-13	NA	88373466	88298290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694_88303772_88304758_88304845_88304940_88305064_88306960_88307056_88308199_88308286_88310179_88310398_88316021_88316160_88316243_88316351_88316437_88316550_88316631_88316739_88318363_88318497_88318720_88318805_88319984_88320115_88321833_88321976_88322826_88322909_88323015_88323141_88372436
ENSMUSG00000005371.16_8	chr17	-	1961	7	ISM	ENSMUSG00000005371.16	ENSMUST00000135639.8	2022	12	12354	-556	4640	-3	3prime_fragment	FALSE	canonical	3	83	junction_3	12.8246724021404	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTTGTCTGAATTTACC	1621	False	NA	-3	True	AATAAA	-14	NA	88303770	88298289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694
ENSMUSG00000005371.16_9	chr17	-	3106	17	ISM	ENSMUSG00000005371.16	ENSMUST00000130379.9	3753	23	54016	8	-2316	-8	3prime_fragment	FALSE	canonical	3	57	junction_15	16.8151717208002	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCATAATGTTGTCTGAAT	NA	False	NA	-8	True	AATAAA	-9	NA	88318440	88298294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_88299604_88299685_88299785_88300246_88300356_88300574_88300683_88301164_88301276_88303463_88303608_88303694_88303772_88304758_88304845_88304940_88305064_88306960_88307056_88308199_88308286_88310179_88310398_88316021_88316160_88316243_88316351_88316437_88316550_88316631_88316739_88318363
ENSMUSG00000005373.14_1	chr5	+	3315	16	NIC	ENSMUSG00000005373.14	novel	3344	16	NA	NA	-2	0	intron_retention	FALSE	canonical	2	15	junction_12	3.71423687391577	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGGGTTGGTGTTGGTG	3416	False	NA	1	True	AATAAA	-14	NA	135135753	135166776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_135136070_135142480_135142588_135150359_135150443_135150589_135150680_135150923_135150969_135152503_135152706_135152790_135152872_135157366_135157552_135161168_135161716_135161962_135162031_135162105_135162514_135162607_135162728_135162847_135162976_135163340_135163465_135164204_135164335_135166095
ENSMUSG00000005373.14_12	chr5	+	3295	16	NIC	ENSMUSG00000005373.14	novel	3214	17	NA	NA	1	0	intron_retention	FALSE	canonical	3	18	junction_10	3.10268700752536	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGGGTTGGTGTTGGTG	3421	False	NA	1	True	AATAAA	-14	NA	135135758	135166776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_135136070_135142480_135142588_135150359_135150443_135150589_135150680_135150923_135150969_135152503_135152706_135152790_135152872_135157366_135157552_135161168_135161716_135161962_135162031_135162105_135162263_135162397_135162514_135162607_135162976_135163340_135163465_135164204_135164335_135166095
ENSMUSG00000005373.14_27	chr5	+	3523	5	FSM	ENSMUSG00000005373.14	ENSMUST00000123370.3	789	5	-550	-2184	-529	0	multi-exon	FALSE	canonical	2	15	junction_2	4.41588043316392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGGGTTGGTGTTGGTG	NA	False	NA	1	True	AATAAA	-14	NA	135161934	135166776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135162514_135162607_135162728_135162847_135162976_135163340_135163465_135164204
ENSMUSG00000005373.14_3	chr5	+	3183	17	FSM	ENSMUSG00000005373.14	ENSMUST00000005507.10	3622	17	-18	457	-2	3	multi-exon	FALSE	canonical	2	15	junction_13	3.60067268020852	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGTTGGTGTTGGTGTGA	3416	False	NA	4	True	AATAAA	-17	NA	135135753	135166779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135136070_135142480_135142588_135150359_135150443_135150589_135150680_135150923_135150969_135152503_135152706_135152790_135152872_135157366_135157552_135161168_135161716_135161962_135162031_135162105_135162263_135162397_135162514_135162607_135162728_135162847_135162976_135163340_135163465_135164204_135164335_135166095
ENSMUSG00000005374.14_0	chr5	+	4356	7	FSM	ENSMUSG00000005374.14	ENSMUST00000153183.8	7488	7	37	3095	3	2844	multi-exon	FALSE	canonical	3	208	junction_3	17.4610678049451	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCATGGTGATTCTTTGCTT	9527	False	NA	6	True	NA	NA	NA	135178547	135191519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135178719_135181788_135181911_135183167_135183353_135185221_135185374_135186385_135186513_135187457_135187611_135188073
ENSMUSG00000005374.14_2	chr5	+	4494	8	NIC	ENSMUSG00000005374.14	novel	7488	7	NA	NA	12	2841	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	100.646278964439	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCATGGTGATTCTTTG	9536	False	NA	3	True	NA	NA	NA	135178556	135191516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_135178719_135178843_135178994_135181788_135181911_135183167_135183353_135185221_135185374_135186385_135186513_135187457_135187611_135188073
ENSMUSG00000005374.14_29	chr5	+	2262	1	ISM	ENSMUSG00000005374.14	ENSMUST00000153183.8	7488	7	10745	3097	7684	2842	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGCATGGTGATTCTTTGC	788	False	NA	4	True	NA	NA	NA	135189255	135191517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135189300_135191500
ENSMUSG00000005378.18_0	chr5	-	1278	12	ISM	ENSMUSG00000005378.18	ENSMUST00000085984.11	1516	13	580	6	4	-4	3prime_fragment	FALSE	canonical	3	942	junction_2	58.9567708278386	742	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAACTGGTGTCCCTGGC	NA	False	NA	-7	True	ATTAAA	-10	NA	135092940	135081816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867
ENSMUSG00000005378.18_3	chr5	-	3821	11	NIC	ENSMUSG00000005378.18	novel	1516	13	NA	NA	4	0	intron_retention	FALSE	canonical	3	942	junction_2	61.6088467673272	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGTGTCCCTGGCCCTG	NA	False	NA	-3	True	ATTAAA	-14	NA	135092940	135081812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135092776_135092867
ENSMUSG00000005397.9_1	chr13	+	6020	20	FSM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	56	15	56	-15	multi-exon	TRUE	canonical	0	0	junction_7	184.261632008595	1402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATCTTATTTTG	NA	False	NA	-3	True	ATTAAA	-12	NA	13612191	13686839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
ENSMUSG00000005397.9_68	chr13	+	5064	17	ISM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	30789	15	30673	-15	3prime_fragment	FALSE	canonical	0	0	junction_4	199.944357494154	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATCTTATTTTG	4637	False	NA	-3	True	ATTAAA	-12	NA	13642924	13686839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
ENSMUSG00000005397.9_74	chr13	+	4777	16	ISM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	35248	15	35132	-15	3prime_fragment	FALSE	canonical	0	0	junction_3	206.231972949557	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATCTTATTTTG	9096	False	NA	-3	True	ATTAAA	-12	NA	13647383	13686839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
ENSMUSG00000005397.9_75	chr13	+	4550	15	ISM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	38704	15	-32457	-15	3prime_fragment	FALSE	canonical	0	0	junction_2	213.289027340071	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATCTTATTTTG	NA	False	NA	-3	True	ATTAAA	-12	NA	13650839	13686839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
ENSMUSG00000005397.9_89	chr13	+	3326	8	ISM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	62086	15	-9075	-15	3prime_fragment	FALSE	canonical	3	703	junction_2	59.1086857804661	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATCTTATTTTG	NA	False	NA	-3	True	ATTAAA	-12	NA	13674221	13686839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
ENSMUSG00000005397.9_98	chr13	+	1727	1	ISM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	72977	15	1816	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATCTTATTTTG	NA	False	NA	-3	True	ATTAAA	-12	NA	13685112	13686839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13685100_13686800
ENSMUSG00000005410.7_0	chr8	+	2609	17	FSM	ENSMUSG00000005410.7	ENSMUST00000212426.2	2604	17	-7	2	0	-2	multi-exon	FALSE	canonical	3	635	junction_1	269.284113147712	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTAGTGCTGTGTGAATA	NA	False	NA	30	True	AATAAA	-43	NA	75836196	75854319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ENSMUSG00000005410.7_1	chr8	+	2624	17	FSM	ENSMUSG00000005410.7	ENSMUST00000164309.3	3381	17	9	748	2	-2	multi-exon	FALSE	canonical	3	795	junction_1	234.54782794507	1234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTAGTGCTGTGTGAATA	NA	False	NA	30	True	AATAAA	-43	NA	75836205	75854319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ENSMUSG00000005410.7_25	chr8	+	2582	16	FSM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	74	-3	74	-2	multi-exon	FALSE	canonical	3	1402	junction_7	114.72564374774	1218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTAGTGCTGTGTGAATA	NA	False	NA	30	True	AATAAA	-43	NA	75836325	75854319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ENSMUSG00000005413.9_0	chr8	+	1564	5	FSM	ENSMUSG00000005413.9	ENSMUST00000005548.8	1569	5	1	4	1	-4	multi-exon	FALSE	canonical	0	0	junction_1	104.358456772798	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCACTAGAAGTGCATTCA	NA	False	NA	6	True	AATAAA	-15	NA	75820249	75827213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513
ENSMUSG00000005413.9_5	chr8	+	1561	5	NNC	ENSMUSG00000005413.9	novel	774	2	NA	NA	163	-2	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	92.3102784092866	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTAGAAGTGCATTCATG	NA	False	NA	8	True	AATAAA	-17	NA	75820411	75827215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_75820558_75822483_75822605_75823477_75823970_75825393_75825494_75826513
ENSMUSG00000005413.9_6	chr8	+	1218	3	ISM	ENSMUSG00000005413.9	ENSMUST00000005548.8	1569	5	3300	7	77	-7	3prime_fragment	FALSE	canonical	3	227	junction_1	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGTCACTAGAAGTGCAT	NA	False	NA	3	True	AATAAA	-12	NA	75823548	75827210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_75823970_75825393_75825494_75826513
ENSMUSG00000005417.18_0	chr11	+	4128	24	FSM	ENSMUSG00000005417.18	ENSMUST00000116371.8	8766	24	0	4638	0	-7	multi-exon	TRUE	canonical	3	400	junction_2	48.3490381455828	978	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAAGCCCCGGCCCCTCT	3585	False	NA	10	True	ATTAAA	-7	NA	59553332	59667042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59553775_59586951_59587030_59587783_59587850_59618377_59618530_59622333_59622419_59626655_59626891_59627897_59628055_59631945_59632088_59632816_59632925_59634596_59634654_59635577_59635647_59639372_59639463_59640344_59640455_59643315_59643887_59645818_59645936_59655205_59655354_59656233_59656352_59657553_59657714_59658780_59658901_59660038_59660126_59660709_59660873_59662442_59662529_59662977_59663044_59666341
ENSMUSG00000005442.14_15	chr7	+	5658	20	NIC	ENSMUSG00000005442.14	novel	6096	20	NA	NA	-202	-3	intron_retention	TRUE	canonical	3	37	junction_13	27.6930144096199	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACACGTGTGGGCTGCTG	288	False	NA	6	True	ATTAAA	-8	NA	24982032	24993564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_24982342_24984273_24984424_24984503_24984739_24984834_24984965_24985058_24985242_24985322_24985489_24986231_24986435_24986525_24986752_24987174_24987279_24987498_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990479_24990768_24990874_24991195_24991488_24991740_24991841_24991994_24992074_24992207_24992380_24992513_24992592
ENSMUSG00000005442.14_20	chr7	+	5614	20	FSM	ENSMUSG00000005442.14	ENSMUST00000163320.8	6096	20	476	6	-155	-3	multi-exon	FALSE	canonical	3	37	junction_13	27.4875947844843	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACACGTGTGGGCTGCTG	335	False	NA	6	True	ATTAAA	-8	NA	24982079	24993564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24982342_24984273_24984424_24984503_24984739_24984834_24984965_24985058_24985242_24985322_24985489_24986231_24986435_24986525_24986752_24987174_24987279_24987498_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990479_24990768_24990874_24991195_24991488_24991740_24991838_24991994_24992074_24992207_24992380_24992513_24992592
ENSMUSG00000005442.14_23	chr7	+	5583	20	NIC	ENSMUSG00000005442.14	novel	6096	20	NA	NA	-121	-3	intron_retention	FALSE	canonical	3	38	junction_9	26.7689405334862	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACACGTGTGGGCTGCTG	369	False	NA	6	True	ATTAAA	-8	NA	24982113	24993564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_24982342_24984273_24984424_24984503_24984739_24984834_24984965_24985058_24985242_24985322_24985489_24986231_24986435_24986525_24986752_24987174_24987279_24987498_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990476_24990768_24990874_24991195_24991488_24991740_24991838_24991994_24992074_24992207_24992380_24992513_24992592
ENSMUSG00000005442.14_39	chr7	+	4188	13	ISM	ENSMUSG00000005442.14	ENSMUST00000167379.2	4732	15	1375	3	1375	-3	3prime_fragment	FALSE	canonical	3	38	junction_2	28.352934396441	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACACGTGTGGGCTGCTG	4878	False	NA	6	True	ATTAAA	-8	NA	24986622	24993564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24986752_24987174_24987279_24987498_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990476_24990768_24990874_24991195_24991488_24991740_24991841_24991994_24992074_24992207_24992380_24992513_24992592
ENSMUSG00000005442.14_47	chr7	+	3167	11	ISM	ENSMUSG00000005442.14	ENSMUST00000167379.2	4732	15	3039	3	-401	-3	3prime_fragment	FALSE	canonical	3	45	junction_7	26.8841961010554	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACACGTGTGGGCTGCTG	6542	False	NA	6	True	ATTAAA	-8	NA	24988286	24993564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990476_24990768_24990874_24991195_24991488_24991740_24991841_24991994_24992074_24992207_24992380_24992513_24992592
ENSMUSG00000005442.14_49	chr7	+	3344	11	ISM	ENSMUSG00000005442.14	ENSMUST00000163320.8	6096	20	6509	3	-575	0	3prime_fragment	FALSE	canonical	3	37	junction_4	28.5383951896388	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACGTGTGGGCTGCTGGCT	6368	False	NA	9	True	ATTAAA	-11	NA	24988112	24993567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990479_24990768_24990874_24991195_24991488_24991740_24991838_24991994_24992074_24992207_24992380_24992513_24992592
ENSMUSG00000005442.14_50	chr7	+	3460	11	NIC	ENSMUSG00000005442.14	novel	4732	15	NA	NA	-691	-3	intron_retention	FALSE	canonical	3	51	junction_7	26.0660698993922	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACACGTGTGGGCTGCTG	6252	False	NA	6	True	ATTAAA	-8	NA	24987996	24993564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990476_24990768_24990874_24991195_24991488_24991740_24991838_24991994_24992074_24992207_24992380_24992513_24992592
ENSMUSG00000005442.14_52	chr7	+	3144	11	ISM	ENSMUSG00000005442.14	ENSMUST00000169266.8	8221	21	21178	20	-381	-3	3prime_fragment	FALSE	canonical	3	37	junction_4	29.250641018617	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACACGTGTGGGCTGCTG	6562	False	NA	6	True	ATTAAA	-8	NA	24988306	24993564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990479_24990768_24990874_24991195_24991488_24991740_24991841_24991994_24992074_24992207_24992380_24992513_24992592
ENSMUSG00000005442.14_69	chr7	+	1851	6	ISM	ENSMUSG00000005442.14	ENSMUST00000167379.2	4732	15	5738	0	353	0	3prime_fragment	FALSE	canonical	3	45	junction_2	33.8254342174642	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACGTGTGGGCTGCTGGCT	463	False	NA	9	True	ATTAAA	-11	NA	24990985	24993567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24991195_24991488_24991740_24991841_24991994_24992074_24992207_24992380_24992513_24992592
ENSMUSG00000005442.14_70	chr7	+	1802	6	ISM	ENSMUSG00000005442.14	ENSMUST00000163320.8	6096	20	9436	1	-320	-1	3prime_fragment	FALSE	canonical	3	51	junction_2	32.1596019875868	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGTGTGGGCTGCTGGCTTG	517	False	NA	11	True	ATTAAA	-13	NA	24991039	24993569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24991195_24991488_24991740_24991838_24991994_24992074_24992207_24992380_24992513_24992592
ENSMUSG00000005442.14_73	chr7	+	1611	5	ISM	ENSMUSG00000005442.14	ENSMUST00000163320.8	6096	20	9916	6	160	-3	3prime_fragment	FALSE	canonical	3	51	junction_1	32.5297940356222	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACACGTGTGGGCTGCTG	997	False	NA	6	True	ATTAAA	-8	NA	24991519	24993564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24991740_24991838_24991994_24992074_24992207_24992380_24992513_24992592
ENSMUSG00000005442.14_74	chr7	+	760	1	ISM	ENSMUSG00000005442.14	ENSMUST00000169266.8	8221	21	25679	17	363	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACGTGTGGGCTGCTGGCT	2285	False	NA	9	True	ATTAAA	-11	NA	24992807	24993567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24992800_24993600
ENSMUSG00000005447.13_1	chr7	-	981	5	FSM	ENSMUSG00000005447.13	ENSMUST00000148150.8	859	5	188	-310	188	0	multi-exon	TRUE	canonical	3	385	junction_2	17.4570902500961	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8791	False	NA	-2	True	ATTAAA	-15	NA	24997119	24994473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796
ENSMUSG00000005447.13_2	chr7	-	829	6	FSM	ENSMUSG00000005447.13	ENSMUST00000005583.12	901	6	72	0	7	0	multi-exon	FALSE	canonical	3	245	junction_5	66.0714764478591	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8571	False	NA	-2	True	ATTAAA	-15	NA	24997339	24994473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
ENSMUSG00000005465.10_1	chr8	-	2638	14	FSM	ENSMUSG00000005465.10	ENSMUST00000005601.9	2664	14	23	3	3	-3	multi-exon	FALSE	canonical	3	16	junction_12	6.10848667572056	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAAGCCAGAGTGCCTT	5282	False	NA	NA	False	NA	NA	NA	84769195	84756925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84757822_84757941_84758051_84758147_84758239_84758645_84758772_84760579_84760739_84760820_84760923_84762713_84762903_84762991_84763176_84765924_84765999_84766106_84766264_84767302_84767461_84767560_84767719_84768715_84768834_84769078
ENSMUSG00000005465.10_2	chr8	-	1648	7	ISM	ENSMUSG00000005465.10	ENSMUST00000005601.9	2664	14	6344	-1	6295	1	3prime_fragment	FALSE	canonical	3	19	junction_3	6.0184900284226	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCAGAGTGCCTTAACA	9687	False	NA	NA	False	NA	NA	NA	84762874	84756921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_84757822_84757941_84758051_84758147_84758239_84758645_84758772_84760579_84760739_84760820_84760923_84762713
ENSMUSG00000005469.11_1	chr8	+	2275	10	FSM	ENSMUSG00000005469.11	ENSMUST00000005606.8	2276	10	-7	8	-7	-8	multi-exon	FALSE	canonical	3	651	junction_8	27.9342260972865	1063	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAAAGTGTCGCTGGT	445	False	NA	NA	False	AATAAA	-11	NA	84699614	84723064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84699862_84707402_84707465_84707800_84707930_84713465_84713565_84714911_84714995_84717056_84717184_84717270_84717367_84717491_84717615_84721423_84721589_84721920
ENSMUSG00000005470.9_0	chr8	+	1572	4	FSM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	209	7	2	-7	multi-exon	FALSE	canonical	3	543	junction_2	3.39934634239519	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTAGATTGTTTTGCTTTT	5925	False	NA	16	True	AATAAA	-9	NA	84682344	84696819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84682567_84691659_84691776_84694462_84694640_84695762
ENSMUSG00000005470.9_1	chr8	+	1459	3	NIC	ENSMUSG00000005470.9	novel	1788	4	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	267	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATTGTTTTGCTTTTTTC	5925	False	NA	19	True	AATAAA	-12	NA	84682344	84696822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_84682567_84694462_84694640_84695762
ENSMUSG00000005481.19_0	chr8	+	1491	11	FSM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	92	73	1	0	multi-exon	FALSE	canonical	3	2216	junction_5	95.6715736256073	1941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGCTCCAGCCCCA	NA	False	NA	26	True	AATAAA	-12	NA	84441897	84449904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUSG00000005481.19_41	chr8	+	1425	10	ISM	ENSMUSG00000005481.19	ENSMUST00000109810.2	1794	11	3836	73	-229	0	3prime_fragment	FALSE	canonical	3	2216	junction_4	99.6272063590743	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGCTCCAGCCCCA	NA	False	NA	26	True	AATAAA	-12	NA	84446012	84449904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUSG00000005483.11_0	chr8	+	2170	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	73	753	73	-753	multi-exon	FALSE	canonical	3	562	junction_2	45.5	657	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGGGAGCAGTCCTTCGA	NA	False	NA	7	True	ATTAAA	-16	NA	84334894	84338529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84335172_84336442_84337024_84337217
ENSMUSG00000005493.16_1	chr3	-	650	2	NIC	ENSMUSG00000005493.16	novel	3110	21	NA	NA	242	-46632	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTATAGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	153611533	153609541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_153609967_153611308
ENSMUSG00000005501.15_2	chr1	-	5305	32	FSM	ENSMUSG00000005501.15	ENSMUST00000187758.7	3977	32	-13	-1315	3	-7	multi-exon	FALSE	canonical	3	37	junction_30	6.87528260700014	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTCAACTCTGTCATAT	NA	False	NA	-16	True	AATAAA	-17	NA	87936269	87872849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_87874430_87876223_87876319_87877653_87877750_87877880_87878092_87879364_87879431_87880061_87880181_87881872_87881968_87884932_87885057_87887510_87887586_87890145_87890211_87893027_87893065_87894905_87894993_87895231_87895321_87896117_87896172_87901798_87901857_87903529_87903654_87906032_87906356_87907736_87907808_87908692_87908778_87909730_87909903_87911475_87911558_87913623_87913922_87916606_87916715_87917783_87917880_87921895_87922025_87923432_87923577_87925534_87925682_87927461_87927627_87930130_87930245_87931968_87932037_87934946_87935165_87936159
ENSMUSG00000005501.15_21	chr1	-	178	1	ISM	ENSMUSG00000005501.15	ENSMUST00000186670.2	571	3	1797	0	1797	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATTTTTTTTCCAGA	NA	False	NA	NA	False	NA	NA	NA	87877598	87877420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_87877400_87877600
ENSMUSG00000005503.9_0	chr6	+	2923	3	FSM	ENSMUSG00000005503.9	ENSMUST00000031787.8	2877	3	-53	7	-53	-7	multi-exon	FALSE	canonical	1	2	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAGCATTTAAGCATAAGT	5398	False	NA	NA	False	AATAAA	-20	NA	52290429	52295356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_52291257_52292722_52292980_52293517
ENSMUSG00000005505.13_0	chr2	+	2314	4	FSM	ENSMUSG00000005505.13	ENSMUST00000111464.8	2343	4	23	6	-6	-6	multi-exon	FALSE	canonical	3	7	junction_1	29.2726645334669	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGATTTGTGTGTCTGTG	2358	False	NA	NA	False	AATAAA	-36	NA	90735106	90740899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90735157_90736009_90736628_90737888_90737996_90739360
ENSMUSG00000005505.13_1	chr2	+	2403	4	FSM	ENSMUSG00000005505.13	ENSMUST00000090682.4	2437	4	28	6	2	-6	multi-exon	FALSE	canonical	3	67	junction_2	4.10960933531265	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGATTTGTGTGTCTGTG	2366	False	NA	NA	False	AATAAA	-36	NA	90735114	90740899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90735254_90736009_90736628_90737888_90737996_90739360
ENSMUSG00000005505.13_2	chr2	+	1987	1	NIC	ENSMUSG00000005505.13	novel	2343	4	NA	NA	2	704	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	2366	False	NA	NA	False	NA	NA	NA	90735114	90737101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90735100_90737100
ENSMUSG00000005505.13_4	chr2	+	2634	4	NIC	ENSMUSG00000005505.13	novel	2437	4	NA	NA	23	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	32.5678778348646	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTGTCTGTGTTGAC	2387	False	NA	NA	False	AATAAA	-41	NA	90735135	90740904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90735254_90735762_90736628_90737888_90737996_90739360
ENSMUSG00000005505.13_5	chr2	+	2260	3	ISM	ENSMUSG00000005505.13	ENSMUST00000090682.4	2437	4	927	6	595	-6	3prime_fragment	FALSE	canonical	3	67	junction_1	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGATTTGTGTGTCTGTG	3265	False	NA	NA	False	AATAAA	-36	NA	90736013	90740899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_90736628_90737888_90737996_90739360
ENSMUSG00000005505.13_7	chr2	+	1265	1	ISM	ENSMUSG00000005505.13	ENSMUST00000111464.8	2343	4	4551	6	127	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGATTTGTGTGTCTGTG	1169	False	NA	NA	False	AATAAA	-36	NA	90739634	90740899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_90739600_90740900
ENSMUSG00000005506.17_1	chr2	+	7664	14	FSM	ENSMUSG00000005506.17	ENSMUST00000068747.14	7614	14	-57	7	28	0	multi-exon	FALSE	canonical	3	151	junction_13	169.345415711454	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2406	False	NA	8	True	ATTAAA	-8	NA	90770830	90849835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
ENSMUSG00000005506.17_10	chr2	+	4740	15	FSM	ENSMUSG00000005506.17	ENSMUST00000005643.14	4830	15	90	0	29	0	multi-exon	FALSE	canonical	3	193	junction_2	185.405677653416	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2407	False	NA	8	True	ATTAAA	-8	NA	90770831	90849835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ENSMUSG00000005506.17_11	chr2	+	7649	14	NIC	ENSMUSG00000005506.17	novel	7806	15	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	3	151	junction_13	182.048826274516	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2409	False	NA	8	True	ATTAAA	-8	NA	90770833	90849835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
ENSMUSG00000005506.17_12	chr2	+	4740	15	NIC	ENSMUSG00000005506.17	novel	4830	15	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	3	185	junction_10	210.286454288294	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2410	False	NA	8	True	ATTAAA	-8	NA	90770834	90849835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839546_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ENSMUSG00000005506.17_124	chr2	+	2393	1	ISM	ENSMUSG00000005506.17	ENSMUST00000005643.14	4830	15	76701	0	4609	0	mono-exon	FALSE	NA	NA	NA	NA	NA	212	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	192	False	NA	8	True	ATTAAA	-8	NA	90847442	90849835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_90847400_90849800
ENSMUSG00000005506.17_13	chr2	+	4724	15	NIC	ENSMUSG00000005506.17	novel	4830	15	NA	NA	33	0	combination_of_known_junctions	FALSE	canonical	3	193	junction_2	195.382630878437	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2411	False	NA	8	True	ATTAAA	-8	NA	90770835	90849835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ENSMUSG00000005506.17_14	chr2	+	4575	14	NIC	ENSMUSG00000005506.17	novel	4678	14	NA	NA	33	0	combination_of_known_junctions	FALSE	canonical	3	185	junction_9	174.629345426316	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2411	False	NA	8	True	ATTAAA	-8	NA	90770835	90849835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839546_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ENSMUSG00000005506.17_4	chr2	+	4588	14	FSM	ENSMUSG00000005506.17	ENSMUST00000111451.10	4678	14	90	0	29	0	multi-exon	FALSE	canonical	3	395	junction_7	113.564516501784	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2407	False	NA	8	True	ATTAAA	-8	NA	90770831	90849835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ENSMUSG00000005506.17_5	chr2	+	4575	14	NIC	ENSMUSG00000005506.17	novel	4678	14	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	3	280	junction_7	133.754300931789	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2408	False	NA	8	True	ATTAAA	-8	NA	90770832	90849835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ENSMUSG00000005506.17_6	chr2	+	4587	14	NIC	ENSMUSG00000005506.17	novel	4678	14	NA	NA	33	0	combination_of_known_junctions	FALSE	canonical	3	185	junction_9	161.021958148313	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2411	False	NA	8	True	ATTAAA	-8	NA	90770835	90849835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839546_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ENSMUSG00000005506.17_8	chr2	+	4728	15	NIC	ENSMUSG00000005506.17	novel	4830	15	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	3	185	junction_10	218.293848016	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2410	False	NA	8	True	ATTAAA	-8	NA	90770834	90849835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839546_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
ENSMUSG00000005510.10_1	chr2	-	889	7	FSM	ENSMUSG00000005510.10	ENSMUST00000005647.4	1046	7	157	0	-28	0	multi-exon	FALSE	canonical	3	1877	junction_6	40.2105569333339	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735014	90724979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
ENSMUSG00000005510.10_2	chr2	-	2695	5	NIC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	-22	0	intron_retention	FALSE	canonical	3	1877	junction_4	26.2963875846094	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735008	90724979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90734833_90734927
ENSMUSG00000005514.15_21	chr5	+	2419	15	ISM	ENSMUSG00000005514.15	ENSMUST00000005651.13	2636	16	26835	1	-134	-1	3prime_fragment	FALSE	canonical	3	231	junction_8	24.0844602283256	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCCTGGTGTTGATTGA	9758	False	NA	13	True	AATAAA	-13	NA	135744724	135764179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
ENSMUSG00000005514.15_7	chr5	+	2472	16	FSM	ENSMUSG00000005514.15	ENSMUST00000005651.13	2636	16	163	1	41	-1	multi-exon	FALSE	canonical	3	231	junction_9	23.2776478384069	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCCTGGTGTTGATTGA	2064	False	NA	13	True	AATAAA	-13	NA	135718052	135764179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135718107_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
ENSMUSG00000005533.11_0	chr7	+	5272	21	FSM	ENSMUSG00000005533.11	ENSMUST00000005671.10	11409	21	-934	7071	-934	429	multi-exon	FALSE	canonical	2	11	junction_1	3.59826347006441	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGCAAGCAGCTTTTT	NA	False	NA	11	True	AGTAAA	-24	NA	67601640	67876345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_67602701_67653557_67654104_67814740_67815054_67819644_67819797_67822978_67823124_67833091_67833307_67834478_67834606_67836737_67836977_67839320_67839489_67839693_67839899_67843094_67843379_67844716_67844854_67845337_67845498_67850991_67851095_67851649_67851721_67856998_67857229_67857510_67857622_67861741_67861905_67864666_67864797_67868149_67868285_67875767
ENSMUSG00000005533.11_2	chr7	+	5366	22	NNC	ENSMUSG00000005533.11	novel	11409	21	NA	NA	-934	430	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	5.74870585850581	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGCAAGCAGCTTTTTA	NA	False	NA	12	True	AGTAAA	-25	NA	67601640	67876346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_67602701_67653557_67654104_67814740_67815054_67819644_67819797_67822978_67823124_67833091_67833307_67834478_67834606_67836737_67836977_67839320_67839489_67839693_67839899_67843094_67843379_67844716_67844854_67845337_67845498_67850991_67851095_67851649_67851721_67856998_67857229_67857510_67857622_67858660_67858754_67861741_67861905_67864666_67864797_67868149_67868285_67875767
ENSMUSG00000005533.11_5	chr7	+	3069	16	ISM	ENSMUSG00000005533.11	ENSMUST00000005671.10	11409	21	230508	7067	-3290	433	3prime_fragment	FALSE	canonical	3	13	junction_1	3.45382235919696	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAGCAGCTTTTTATTT	NA	False	NA	15	True	AGTAAA	-28	NA	67833082	67876349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_67833307_67834478_67834606_67836737_67836977_67839320_67839489_67839693_67839899_67843094_67843379_67844716_67844854_67845337_67845498_67850991_67851095_67851649_67851721_67856998_67857229_67857510_67857622_67861741_67861905_67864666_67864797_67868149_67868285_67875767
ENSMUSG00000005533.11_7	chr7	+	3496	1	ISM	ENSMUSG00000005533.11	ENSMUST00000005671.10	11409	21	277341	5	18330	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCACCTTTGTCTCCCAGT	NA	False	NA	0	True	AATAAA	-11	NA	67879915	67883411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_67879900_67883400
ENSMUSG00000005534.11_0	chr8	-	3351	1	NIC	ENSMUSG00000005534.11	novel	551	4	NA	NA	5270	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGAGACTATTTTTTG	NA	False	NA	-12	True	AATAAA	-2	NA	3204285	3200934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_3200900_3204300
ENSMUSG00000005566.15_0	chr7	+	2985	17	FSM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	256	4	256	-1	multi-exon	FALSE	canonical	3	3307	junction_7	380.550172242439	8389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCTCATGCCTCAGCTG	NA	False	NA	54	True	AATAAA	-15	NA	12758334	12764958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
ENSMUSG00000005575.17_1	chr7	-	1114	6	FSM	ENSMUSG00000005575.17	ENSMUST00000005714.14	1472	6	357	1	-170	-1	multi-exon	FALSE	canonical	3	1870	junction_5	193.215320303541	1277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTCTGCCTCTTCCTT	8800	False	NA	-4	True	ATTAAA	-16	NA	12771843	12769165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771547
ENSMUSG00000005580.12_0	chr16	-	5116	11	FSM	ENSMUSG00000005580.12	ENSMUST00000117801.8	4507	11	-628	19	62	-3	multi-exon	FALSE	canonical	2	3	junction_5	2.72763633939717	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	4238300	4105411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4106954_4112526_4112569_4115272_4115422_4116550_4116711_4122240_4122450_4125019_4125123_4129388_4129607_4130548_4130654_4141630_4141822_4235716_4237453_4237639
ENSMUSG00000005580.12_1	chr16	-	3941	10	FSM	ENSMUSG00000005580.12	ENSMUST00000005719.4	4457	10	514	2	514	-2	multi-exon	TRUE	canonical	2	3	junction_5	2.86744175568088	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	4236937	4105410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4106954_4112526_4112569_4115272_4115422_4116550_4116711_4122240_4122450_4125019_4125123_4129388_4129607_4130548_4130654_4141630_4141822_4235716
ENSMUSG00000005580.12_2	chr16	-	1180	1	ISM	ENSMUSG00000005580.12	ENSMUST00000117801.8	4507	11	131081	19	130860	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	4106591	4105411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_4105400_4106600
ENSMUSG00000005609.17_0	chr7	+	4252	25	FSM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	45	3	1	-3	multi-exon	FALSE	canonical	3	158	junction_8	10.558616149856	367	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCGAGTGCCTGTGTGTCC	544	False	NA	28	True	AATAAA	-14	NA	110628202	110655581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651667_110652588_110652686_110653020_110653134_110654565
ENSMUSG00000005610.18_0	chr7	-	3787	22	FSM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	25	4183	12	-1	multi-exon	FALSE	canonical	3	4823	junction_9	518.544999107863	9747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAGTTGTACATGACTTC	NA	False	NA	-20	True	AATAAA	-15	NA	110682212	110671139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ENSMUSG00000005610.18_2	chr7	-	3673	21	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	12	1	12	-1	intron_retention	FALSE	canonical	3	1102	junction_8	1132.63140517999	2026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAGTTGTACATGACTTC	NA	False	NA	-20	True	AATAAA	-15	NA	110682212	110671139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ENSMUSG00000005615.16_0	chr16	+	4778	9	FSM	ENSMUSG00000005615.16	ENSMUST00000079791.11	4789	9	-1	12	-1	-12	multi-exon	FALSE	canonical	3	61	junction_1	11.3880419739304	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTGTTTCAATTTCCT	2488	False	NA	10	True	AATAAA	-15	NA	32249740	32293876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32249850_32270522_32270650_32274029_32274130_32280818_32280936_32281848_32282001_32285257_32285337_32285895_32286039_32288868_32289058_32290114
ENSMUSG00000005615.16_12	chr16	+	2441	1	ISM	ENSMUSG00000005615.16	ENSMUST00000079791.11	4789	9	41694	12	9678	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTGTTTCAATTTCCT	NA	False	NA	10	True	AATAAA	-15	NA	32291435	32293876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32291400_32293900
ENSMUSG00000005615.16_2	chr16	+	1738	8	ISM	ENSMUSG00000005615.16	ENSMUST00000079791.11	4789	9	-1	4109	-1	247	5prime_fragment	FALSE	canonical	3	61	junction_1	11.4481974340852	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGTTTTTGCTGGCG	2488	False	NA	NA	False	AATAAA	-15	NA	32249740	32289779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32249850_32270522_32270650_32274029_32274130_32280818_32280936_32281848_32282001_32285257_32285337_32285895_32286039_32288868
ENSMUSG00000005621.12_0	chr7	+	4099	10	FSM	ENSMUSG00000005621.12	ENSMUST00000107353.3	7297	10	-8	3206	-8	505	multi-exon	FALSE	canonical	3	63	junction_1	16.7715220125451	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGCTCTGGAGCAGTG	NA	False	NA	16	True	AATAAA	-27	NA	80643420	80691706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_80643511_80659181_80659288_80673018_80675258_80679196_80679376_80687097_80687275_80687552_80687713_80687811_80688100_80688300_80688414_80688877_80689014_80691095
ENSMUSG00000005621.12_9	chr7	+	2745	8	ISM	ENSMUSG00000005621.12	ENSMUST00000107353.3	7297	10	30748	3206	1009	505	3prime_fragment	FALSE	canonical	3	89	junction_2	12.2690917449051	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGCTCTGGAGCAGTG	NA	False	NA	16	True	AATAAA	-27	NA	80674176	80691706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_80675258_80679196_80679376_80687097_80687275_80687552_80687713_80687811_80688100_80688300_80688414_80688877_80689014_80691095
ENSMUSG00000005625.16_1	chr3	-	1278	10	FSM	ENSMUSG00000005625.16	ENSMUST00000071664.12	1276	10	-9	7	-9	0	multi-exon	FALSE	canonical	3	876	junction_3	370.873576676127	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTTTGCTTCAAATAGT	NA	False	NA	-20	True	AATAAA	-15	NA	94949872	94940014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ENSMUSG00000005625.16_2	chr3	-	1266	10	FSM	ENSMUSG00000005625.16	ENSMUST00000107237.8	1332	10	56	10	-6	0	multi-exon	FALSE	canonical	3	1001	junction_3	333.422654699207	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTTTGCTTCAAATAGT	NA	False	NA	-20	True	AATAAA	-15	NA	94949869	94940014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ENSMUSG00000005628.13_1	chr3	+	700	5	ISM	ENSMUSG00000005628.13	ENSMUST00000107227.4	1260	10	3019	1	-119	-1	3prime_fragment	FALSE	canonical	0	0	junction_2	1.08972473588517	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCCGCCTGTCTCCTTGCC	2057	False	NA	NA	False	AATAAA	-14	NA	95034844	95036515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95035031_95035114_95035223_95035579_95035724_95035910_95036056_95036398
ENSMUSG00000005656.10_0	chr12	-	1899	14	FSM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	31	-2	-8	2	multi-exon	FALSE	canonical	3	824	junction_2	126.191832929968	952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGAAGGTCTTTTCTTT	NA	False	NA	-8	True	AATAAA	-22	NA	54842457	54793131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
ENSMUSG00000005656.10_1	chr12	-	1875	13	ISM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	201	-2	-18	2	3prime_fragment	FALSE	canonical	3	824	junction_2	114.005725977056	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGAAGGTCTTTTCTTT	NA	False	NA	-8	True	AATAAA	-22	NA	54842287	54793131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238
ENSMUSG00000005656.10_47	chr12	-	1038	10	ISM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	29	10504	-10	22	5prime_fragment	FALSE	canonical	3	826	junction_9	114.99565209172	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAATATCAGCTGTGGTG	NA	False	NA	-10	True	AATAAA	-14	NA	54842459	54803637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
ENSMUSG00000005667.9_0	chr6	-	2038	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	21	26	21	-26	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	3408	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGGTGTGGAATGCGTTT	NA	False	NA	-24	True	AATAAA	-9	NA	83294567	83282698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
ENSMUSG00000005672.13_0	chr5	+	5152	21	FSM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	79	10	40	-10	multi-exon	FALSE	canonical	3	795	junction_9	132.566766197264	1903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCAAATAAATTTTTC	806	False	NA	4	True	NA	NA	NA	75735654	75817372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
ENSMUSG00000005672.13_1	chr5	+	5164	21	FSM	ENSMUSG00000005672.13	ENSMUST00000005815.7	5214	21	40	10	40	-10	multi-exon	FALSE	canonical	3	392	junction_9	204.916348786523	948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCAAATAAATTTTTC	806	False	NA	4	True	NA	NA	NA	75735654	75817372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
ENSMUSG00000005672.13_147	chr5	+	1613	1	ISM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	80186	8	5909	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAAATAAATTTTTCTG	NA	False	NA	6	True	NA	NA	NA	75815761	75817374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_75815800_75817400
ENSMUSG00000005674.10_0	chr1	-	994	6	ISM	ENSMUSG00000005674.10	ENSMUST00000111327.8	2812	9	1348	1306	1348	-745	3prime_fragment	FALSE	canonical	3	111	junction_2	8.00999375780031	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGTTTCTCCATTCCT	9973	False	NA	95	True	AAAAAG	-16	NA	171048405	171046676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373
ENSMUSG00000005674.10_1	chr1	-	1543	10	FSM	ENSMUSG00000005674.10	ENSMUST00000005817.9	4712	10	66	3103	0	-751	multi-exon	FALSE	canonical	3	83	junction_9	16.1314048434171	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTCTCCTGGTTTCTCC	9575	False	NA	89	True	AAAAAG	-10	NA	171050017	171046682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049723_171049943
ENSMUSG00000005674.10_4	chr1	-	1391	9	FSM	ENSMUSG00000005674.10	ENSMUST00000111327.8	2812	9	106	1315	106	-754	multi-exon	FALSE	canonical	3	111	junction_2	8.45484328654293	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCATTTCTCCTGGTTTC	9945	False	NA	86	True	AAAAAG	-7	NA	171049647	171046685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472
ENSMUSG00000005674.10_6	chr1	-	1433	10	NIC	ENSMUSG00000005674.10	novel	4712	10	NA	NA	0	-761	combination_of_known_junctions	FALSE	canonical	2	13	junction_9	36.8945778745768	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCTATCCCATTTCTCC	9575	False	NA	79	True	NA	NA	NA	171050017	171046692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049623_171049943
ENSMUSG00000005674.10_7	chr1	-	1219	8	ISM	ENSMUSG00000005674.10	ENSMUST00000111327.8	2812	9	547	1310	547	-749	3prime_fragment	FALSE	canonical	3	111	junction_2	9.02151623076968	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTCCTGGTTTCTCCAT	9415	False	NA	91	True	AAAAAG	-12	NA	171049206	171046680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140
ENSMUSG00000005681.13_0	chr1	+	547	4	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3181	-3	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	24.4176620957499	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTCATGCCTCTTGTGT	NA	False	NA	8	True	AATAAA	-14	NA	171049441	171053939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_171049548_171052855_171052936_171053234_171053368_171053711
ENSMUSG00000005682.10_1	chr10	+	4386	26	FSM	ENSMUSG00000005682.10	ENSMUST00000218315.2	4379	26	-14	7	-3	-1	multi-exon	FALSE	canonical	2	164	junction_12	40.3480061465248	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAACCGCTAGTGTGGG	NA	False	NA	8	True	AATAAA	-17	NA	128139228	128157215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
ENSMUSG00000005682.10_14	chr10	+	4400	26	NNC	ENSMUSG00000005682.10	novel	4379	26	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_12	55.6509694434877	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCGCTAGTGTGGGA	NA	False	NA	9	True	AATAAA	-18	NA	128139218	128157216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150048_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
ENSMUSG00000005682.10_2	chr10	+	3414	2	FSM	ENSMUSG00000005682.10	ENSMUST00000219801.2	3410	2	-11	7	2	-7	multi-exon	FALSE	canonical	3	271	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128139233	128143270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128139341_128139963
ENSMUSG00000005682.10_21	chr10	+	4291	26	NIC	ENSMUSG00000005682.10	novel	4379	26	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	2	24	junction_2	56.8384939983459	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCGCTAGTGTGGGA	NA	False	NA	9	True	AATAAA	-18	NA	128139220	128157216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_128139341_128139963_128140259_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
ENSMUSG00000005682.10_4	chr10	+	4426	26	FSM	ENSMUSG00000005682.10	ENSMUST00000005825.8	4445	26	13	6	13	0	multi-exon	FALSE	canonical	2	78	junction_17	49.8603810655314	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCGCTAGTGTGGGA	NA	False	NA	9	True	AATAAA	-18	NA	128139216	128157216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
ENSMUSG00000005683.9_1	chr10	+	2889	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	30	7	30	-7	multi-exon	TRUE	canonical	3	1246	junction_9	132.722869167299	2245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAATGTTTGAGCTTGCTC	NA	False	NA	11	True	AATAAA	-11	NA	128173632	128198341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
ENSMUSG00000005683.9_47	chr10	+	1318	1	ISM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	23421	7	23345	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAATGTTTGAGCTTGCTC	2285	False	NA	11	True	AATAAA	-11	NA	128197023	128198341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128197000_128198300
ENSMUSG00000005686.18_3	chr7	+	3936	15	FSM	ENSMUSG00000005686.18	ENSMUST00000170374.8	3489	15	28	-475	28	-11	multi-exon	FALSE	canonical	3	40	junction_1	9.21539306745812	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAATAGAACAAATGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	110367440	110411601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_110367587_110377005_110377232_110387816_110388022_110390394_110390555_110392846_110393067_110394885_110395016_110399849_110400045_110401638_110401771_110402287_110402452_110402933_110403061_110404031_110404196_110405170_110405292_110406986_110407161_110409002_110409114_110409940
ENSMUSG00000005686.18_6	chr7	+	4099	15	FSM	ENSMUSG00000005686.18	ENSMUST00000213373.2	3337	15	-287	-475	281	-11	multi-exon	FALSE	canonical	3	8	junction_1	15.4927567012485	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAATAGAACAAATGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	110367830	110411601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_110368140_110377005_110377232_110387816_110388022_110390394_110390555_110392846_110393067_110394885_110395016_110399849_110400045_110401638_110401771_110402287_110402452_110402933_110403061_110404031_110404196_110405170_110405292_110406986_110407161_110409002_110409114_110409940
ENSMUSG00000005686.18_9	chr7	+	3792	14	ISM	ENSMUSG00000005686.18	ENSMUST00000005829.13	4094	15	5193	11	107	-11	3prime_fragment	FALSE	canonical	3	45	junction_6	7.83105636469195	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAATAGAACAAATGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	110377003	110411601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_110377232_110387816_110388022_110390394_110390555_110392846_110393067_110394885_110395016_110399849_110400045_110401638_110401771_110402287_110402452_110402933_110403061_110404031_110404196_110405170_110405292_110406986_110407161_110409002_110409114_110409940
ENSMUSG00000005687.15_1	chr3	+	1047	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	95	325	1	0	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	1596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATGTGTGGCTATAG	5024	False	NA	48	True	AATAAA	-16	NA	103079065	103086143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUSG00000005687.15_31	chr3	+	377	1	ISM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	6792	329	6662	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATTTTTATGTGTGGCT	NA	False	NA	44	True	AATAAA	-12	NA	103085762	103086139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_103085800_103086100
ENSMUSG00000005698.16_0	chr8	+	3811	12	FSM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	-36	7	-25	-7	multi-exon	FALSE	canonical	3	206	junction_10	73.0190736997323	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGCATTCTGAAGACTCC	NA	False	NA	31	True	AATAAA	-14	NA	106363174	106409547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066
ENSMUSG00000005698.16_1	chr8	+	3807	12	NIC	ENSMUSG00000005698.16	novel	3782	12	NA	NA	-25	-8	combination_of_known_junctions	FALSE	canonical	3	229	junction_10	67.2234463229697	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGGCATTCTGAAGACTC	NA	False	NA	30	True	AATAAA	-13	NA	106363174	106409546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406705_106406892_106408066
ENSMUSG00000005698.16_58	chr8	+	3334	10	ISM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	27356	8	-12076	-8	3prime_fragment	FALSE	canonical	3	206	junction_8	80.3768899898749	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGGCATTCTGAAGACTC	NA	False	NA	30	True	AATAAA	-13	NA	106390566	106409546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066
ENSMUSG00000005698.16_81	chr8	+	1339	1	ISM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	45000	5	5568	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATTCTGAAGACTCCGT	8158	False	NA	33	True	AATAAA	-16	NA	106408210	106409549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106408200_106409500
ENSMUSG00000005699.17_0	chr8	+	1264	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212352.2	1234	3	-33	3	0	-3	multi-exon	FALSE	canonical	2	20	junction_1	6.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTAGATGTGGTCCTTC	NA	False	NA	5	True	ATTAAA	-11	NA	106427785	106430119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106427950_106428805_106429029_106429242
ENSMUSG00000005699.17_1	chr8	+	1269	3	FSM	ENSMUSG00000005699.17	ENSMUST00000098444.9	1273	3	3	1	3	0	multi-exon	FALSE	canonical	2	20	junction_1	3	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATGTGGTCCTTCTGTGT	NA	False	NA	10	True	ATTAAA	-16	NA	106427788	106430124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106427950_106428805_106429029_106429239
ENSMUSG00000005699.17_10	chr8	+	1243	3	FSM	ENSMUSG00000005699.17	ENSMUST00000093195.7	1265	3	17	5	15	-3	multi-exon	FALSE	canonical	3	15	junction_1	5.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTAGATGTGGTCCTTC	NA	False	NA	5	True	ATTAAA	-11	NA	106428295	106430119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106428436_106428805_106429029_106429239
ENSMUSG00000005699.17_13	chr8	+	1470	2	ISM	ENSMUSG00000005699.17	ENSMUST00000212430.2	1261	3	5	0	5	0	intron_retention	FALSE	canonical	3	15	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106428285	106430125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106428436_106428805
ENSMUSG00000005699.17_14	chr8	+	1000	2	ISM	ENSMUSG00000005699.17	ENSMUST00000212430.2	1261	3	623	8	623	-5	3prime_fragment	FALSE	canonical	3	33	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATGTAGATGTGGTCCT	NA	False	NA	3	True	ATTAAA	-9	NA	106428903	106430117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106429029_106429242
ENSMUSG00000005699.17_3	chr8	+	1239	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212634.2	678	3	9	-570	3	0	multi-exon	FALSE	canonical	0	0	junction_1	13	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106427788	106430125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106427919_106428805_106429029_106429239
ENSMUSG00000005699.17_4	chr8	+	1227	3	NIC	ENSMUSG00000005699.17	novel	1234	3	NA	NA	6	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	16.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTAGATGTGGTCCTTC	NA	False	NA	5	True	ATTAAA	-11	NA	106427791	106430119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106427919_106428805_106429029_106429242
ENSMUSG00000005699.17_5	chr8	+	1436	2	ISM	ENSMUSG00000005699.17	ENSMUST00000212634.2	678	3	15	-562	9	-5	intron_retention	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATGTAGATGTGGTCCT	NA	False	NA	3	True	ATTAAA	-9	NA	106427794	106430117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106427919_106428805
ENSMUSG00000005699.17_8	chr8	+	1245	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212430.2	1261	3	15	1	15	0	multi-exon	FALSE	canonical	3	15	junction_1	9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATGTGGTCCTTCTGTGT	NA	False	NA	10	True	ATTAAA	-16	NA	106428295	106430124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106428436_106428805_106429029_106429242
ENSMUSG00000005718.9_0	chr16	-	2130	7	FSM	ENSMUSG00000005718.9	ENSMUST00000005862.9	2247	7	114	3	114	-3	multi-exon	FALSE	canonical	3	103	junction_5	11.6010057035299	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTGTAGTTATTGAGG	NA	False	NA	-3	True	AATAAA	-19	NA	4377604	4362527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4363612_4365118_4365275_4367194_4367336_4369093_4369265_4369609_4369709_4369798_4369965_4377291
ENSMUSG00000005718.9_4	chr16	-	1855	7	NNC	ENSMUSG00000005718.9	novel	2247	7	NA	NA	159	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	38.4953099596417	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTGTAGTTATTGAGG	NA	False	NA	-3	True	AATAAA	-19	NA	4376488	4362527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_4363612_4365118_4365275_4367194_4367336_4369093_4369265_4369609_4369709_4369798_4369965_4376450
ENSMUSG00000005718.9_7	chr16	-	1798	6	ISM	ENSMUSG00000005718.9	ENSMUST00000005862.9	2247	7	7773	3	881	-3	3prime_fragment	TRUE	canonical	3	103	junction_5	12.3028451993838	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTGTAGTTATTGAGG	5046	False	NA	-3	True	AATAAA	-19	NA	4369945	4362527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_4363612_4365118_4365275_4367194_4367336_4369093_4369265_4369609_4369709_4369798
ENSMUSG00000005732.15_0	chr16	-	1029	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	46	10	-40	8	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	5108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTGGACCAGCTGACA	7179	False	NA	-11	True	AATAAA	-12	NA	18066550	18057657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ENSMUSG00000005774.13_1	chr3	+	4060	10	NIC	ENSMUSG00000005774.13	novel	4333	10	NA	NA	15	-6	intron_retention	FALSE	canonical	3	11	junction_1	9.15302014516399	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGCCATCTGAGCCTTA	NA	False	NA	-5	True	NA	NA	NA	94861400	94868651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_94861493_94862325_94862458_94862662_94862697_94863056_94863140_94863582_94863703_94863797_94863918_94864031_94864114_94864407_94864610_94865092_94865197_94865560
ENSMUSG00000005774.13_12	chr3	+	2653	1	ISM	ENSMUSG00000005774.13	ENSMUST00000137088.8	4333	10	4587	214	3224	1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGAGCCTTATGTTTCT	1846	False	NA	2	True	NA	NA	NA	94866005	94868658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_94866000_94868700
ENSMUSG00000005774.13_2	chr3	+	4076	10	FSM	ENSMUSG00000005774.13	ENSMUST00000137088.8	4333	10	42	215	-10	0	multi-exon	FALSE	canonical	3	32	junction_7	4.21637021355784	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTGAGCCTTATGTTTC	NA	False	NA	1	True	NA	NA	NA	94861460	94868657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94861563_94862325_94862458_94862662_94862697_94863056_94863140_94863582_94863703_94863797_94863918_94864031_94864114_94864407_94864610_94865092_94865197_94865560
ENSMUSG00000005774.13_3	chr3	+	4081	10	NIC	ENSMUSG00000005774.13	novel	4333	10	NA	NA	2	-1	intron_retention	FALSE	canonical	2	5	junction_2	10.6666666666667	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGAGCCTTATGTTTCTT	NA	False	NA	3	True	NA	NA	NA	94861447	94868659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_94861563_94862325_94862448_94862662_94862697_94863056_94863140_94863582_94863703_94863797_94863918_94864031_94864114_94864407_94864610_94865092_94865197_94865560
ENSMUSG00000005779.13_0	chr3	-	923	7	FSM	ENSMUSG00000005779.13	ENSMUST00000005923.7	1183	7	28	232	28	-3	multi-exon	FALSE	canonical	3	1538	junction_1	134.402380931292	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCTGAGTTGGATTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	94794244	94791635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94791752_94791981_94792071_94792227_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
ENSMUSG00000005779.13_5	chr3	-	671	6	ISM	ENSMUSG00000005779.13	ENSMUST00000005923.7	1183	7	400	233	184	-4	3prime_fragment	FALSE	canonical	3	1538	junction_1	146.048758981376	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGCTGAGTTGGATTTTGT	NA	False	NA	-7	True	AATAAA	-17	NA	94793872	94791636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94791752_94791981_94792071_94792227_94792345_94792970_94793053_94793385_94793533_94793751
ENSMUSG00000005802.13_0	chr2	-	5369	6	FSM	ENSMUSG00000005802.13	ENSMUST00000099457.4	3170	6	-61	-2138	-61	-27	multi-exon	FALSE	canonical	2	3	junction_5	4.53431361950185	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTTAAAATGTACAGT	NA	False	NA	NA	False	AATAAA	-26	NA	122544644	122523179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_122527254_122527917_122528053_122528870_122528977_122529783_122529989_122531318_122531473_122543949
ENSMUSG00000005802.13_1	chr2	-	5550	7	FSM	ENSMUSG00000005802.13	ENSMUST00000005952.11	5458	7	-119	27	-95	-27	multi-exon	FALSE	canonical	2	11	junction_5	3.62476052848859	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTTAAAATGTACAGT	NA	False	NA	NA	False	AATAAA	-26	NA	122544678	122523179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_122527254_122527917_122528053_122528870_122528977_122529783_122529989_122531318_122531473_122536314_122536462_122543949
ENSMUSG00000005802.13_2	chr2	-	3334	1	ISM	ENSMUSG00000005802.13	ENSMUST00000005952.11	5458	7	18060	13	18060	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTCCCCTAATTGTTTT	NA	False	NA	NA	False	AATAAA	-40	NA	122526499	122523165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_122523200_122526500
ENSMUSG00000005802.13_3	chr2	-	4234	3	ISM	ENSMUSG00000005802.13	ENSMUST00000005952.11	5458	7	15664	27	15664	-27	3prime_fragment	FALSE	canonical	2	12	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTTAAAATGTACAGT	NA	False	NA	NA	False	AATAAA	-26	NA	122528895	122523179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_122527254_122527917_122528053_122528870
ENSMUSG00000005804.15_0	chr2	+	2079	5	FSM	ENSMUSG00000005804.15	ENSMUST00000005954.9	3484	5	28	1377	1	-1	multi-exon	FALSE	canonical	3	133	junction_2	4.54835134966506	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAAGGCTGGCGATTCTTT	8297	False	NA	3	True	AATAAA	-15	NA	122580450	122590018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_122580625_122584508_122584651_122586045_122586134_122587974_122588062_122588430
ENSMUSG00000005804.15_3	chr2	+	2078	5	FSM	ENSMUSG00000005804.15	ENSMUST00000148460.8	2088	5	8	2	0	-2	multi-exon	FALSE	canonical	3	17	junction_2	54.4443523241851	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGAAGGCTGGCGATTCTT	8293	False	NA	2	True	AATAAA	-14	NA	122580446	122590017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_122580625_122584508_122584651_122586049_122586134_122587974_122588062_122588430
ENSMUSG00000005813.13_0	chr3	-	1212	1	ISM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	29347	1	8786	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCACTTTTTCTAGTTGT	NA	False	NA	-10	True	ATTAAA	-14	NA	138165929	138164717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_138164700_138165900
ENSMUSG00000005813.13_2	chr3	-	2558	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	126	2	9	-2	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCACTTTTTCTAGTTG	NA	False	NA	-11	True	ATTAAA	-13	NA	138195150	138164718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
ENSMUSG00000005823.10_0	chr17	-	2084	17	FSM	ENSMUSG00000005823.10	ENSMUST00000005975.8	2064	17	31	-51	5	23	multi-exon	FALSE	canonical	3	88	junction_12	32.0784560686764	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAAAGCTGTGCGGAGCC	NA	False	NA	-8	True	AATAAA	-41	NA	57554658	57541920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550114_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
ENSMUSG00000005823.10_6	chr17	-	2105	17	FSM	ENSMUSG00000005823.10	ENSMUST00000233568.2	2405	17	14	286	5	23	multi-exon	FALSE	canonical	3	119	junction_12	26.3293443708726	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAAAGCTGTGCGGAGCC	NA	False	NA	-8	True	AATAAA	-41	NA	57554658	57541920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
ENSMUSG00000005836.11_0	chr18	+	3083	7	FSM	ENSMUSG00000005836.11	ENSMUST00000047762.10	3234	7	144	7	106	-7	multi-exon	FALSE	canonical	1	1	junction_2	0.897527467855751	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTGAGATCCTTCCTTT	-8	True	NA	NA	False	AATAAA	-23	NA	11052613	11085628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_11052744_11054035_11055190_11059051_11059219_11063017_11063144_11064509_11064598_11064687_11064792_11084314
ENSMUSG00000005836.11_2	chr18	+	2674	6	ISM	ENSMUSG00000005836.11	ENSMUST00000047762.10	3234	7	1846	6	-722	-6	3prime_fragment	FALSE	canonical	1	1	junction_1	0.894427190999916	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGAGATCCTTCCTTTT	247	False	NA	NA	False	AATAAA	-24	NA	11054315	11085629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_11055190_11059051_11059219_11063017_11063144_11064509_11064598_11064687_11064792_11084314
ENSMUSG00000005846.13_1	chr16	-	1889	9	FSM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	46	10	-21	-10	multi-exon	FALSE	canonical	0	0	junction_8	907.175424049836	2834	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTAAAGTCGCTGTAC	1000	False	NA	-13	True	ATTAAA	-15	NA	11021149	11010843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUSG00000005871.16_15	chr18	+	9616	15	NIC	ENSMUSG00000005871.16	novel	12346	16	NA	NA	-6	-2793	combination_of_known_splicesites	FALSE	canonical	3	18	junction_7	28.5999857285536	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTATTACTGAAATTGGT	NA	False	NA	10	True	AATAAA	-15	NA	34353970	34452449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_34354330_34394057_34394211_34401350_34401433_34402108_34402308_34405491_34405601_34409616_34409731_34412321_34412406_34429083_34429183_34431475_34431855_34433018_34433115_34437635_34437776_34438618_34438697_34439315_34439433_34443745_34443961_34445057
ENSMUSG00000005871.16_2	chr18	+	9789	17	NNC	ENSMUSG00000005871.16	novel	12811	16	NA	NA	-8	-2781	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_11	14.6799182559032	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGGTATTTGTTTGAGG	NA	False	NA	22	True	AATAAA	-27	NA	34353968	34452461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_34354330_34394057_34394211_34401350_34401433_34402108_34402308_34405491_34405601_34409616_34409731_34412321_34412406_34422890_34422996_34429083_34429183_34431475_34431855_34433018_34433115_34434314_34434369_34437635_34437776_34438618_34438697_34439315_34439433_34443745_34443961_34445057
ENSMUSG00000005871.16_29	chr18	+	3846	1	ISM	ENSMUSG00000005871.16	ENSMUST00000115781.10	12346	16	94727	2633	14450	-2633	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTGTTGACACTTAACC	NA	False	NA	1	True	AATAAA	-12	NA	34448763	34452609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_34448800_34452600
ENSMUSG00000005871.16_30	chr18	+	1555	1	ISM	ENSMUSG00000005871.16	ENSMUST00000115781.10	12346	16	99651	0	19374	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTAGTGAAGGTTGCCAT	NA	False	NA	3	True	ATTAAA	-14	NA	34453687	34455242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_34453700_34455200
ENSMUSG00000005871.16_9	chr18	+	9880	16	FSM	ENSMUSG00000005871.16	ENSMUST00000079362.13	12811	16	-68	2999	-8	-2636	multi-exon	FALSE	canonical	3	36	junction_11	20.0838243370131	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGATTGTTGACACTTA	NA	False	NA	-2	True	AATAAA	-9	NA	34353968	34452606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_34354330_34394057_34394211_34401350_34401433_34402108_34402308_34405491_34405601_34409616_34409731_34412321_34412406_34422890_34422996_34429083_34429183_34431475_34431855_34433018_34433115_34437635_34437776_34438618_34438697_34439315_34439433_34443745_34443961_34445057
ENSMUSG00000005873.7_0	chr18	-	752	5	FSM	ENSMUSG00000005873.7	ENSMUST00000006027.7	2852	5	-9	2109	-9	-2	multi-exon	FALSE	canonical	3	477	junction_1	38.3495436739474	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGCTTTGCCTTTGTTG	5552	False	NA	-7	True	ATTAAA	-16	NA	34506431	34480046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_34480222_34482687_34482857_34490144_34490284_34505457_34505552_34506256
ENSMUSG00000005881.14_0	chr2	+	1311	13	FSM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	63	3	2	-1	multi-exon	FALSE	canonical	3	758	junction_4	74.7846445171437	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGACTGGTCTCAGTGTG	NA	False	NA	13	True	AATAAA	-16	NA	155850027	155860196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ENSMUSG00000005881.14_20	chr2	+	1162	11	ISM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	476	3	-98	-1	3prime_fragment	FALSE	canonical	3	758	junction_2	58.9983898085363	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGACTGGTCTCAGTGTG	NA	False	NA	13	True	AATAAA	-16	NA	155850440	155860196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ENSMUSG00000005882.19_0	chr2	-	2393	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	261	-21	1	-4	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAACTGCTCCTGGAATG	NA	False	NA	-37	True	AATAAA	-14	NA	155771969	155688819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
ENSMUSG00000005882.19_1	chr2	-	2396	10	FSM	ENSMUSG00000005882.19	ENSMUST00000136933.8	2413	10	11	6	1	-4	multi-exon	FALSE	canonical	3	22	junction_7	134.914879429061	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAACTGCTCCTGGAATG	NA	False	NA	-37	True	AATAAA	-14	NA	155771969	155688819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752388_155753660_155753757_155763554_155763648_155771932
ENSMUSG00000005882.19_8	chr2	-	2356	9	ISM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	8583	-21	8291	-4	3prime_fragment	FALSE	canonical	3	315	junction_1	50.5809993970068	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAACTGCTCCTGGAATG	NA	False	NA	-37	True	AATAAA	-14	NA	155763647	155688819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554
ENSMUSG00000005886.15_10	chr1	-	5847	22	FSM	ENSMUSG00000005886.15	ENSMUST00000068304.13	8006	22	37	2122	-17	1194	multi-exon	FALSE	canonical	3	14	junction_10	11.9773027979143	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAGCAGCCCACTTTGAT	NA	False	NA	-12	True	AATAAA	-19	NA	13444270	13211504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_13212997_13217098_13217189_13218540_13218740_13219154_13219333_13220913_13221143_13222602_13222681_13223020_13223300_13226593_13226760_13230384_13230515_13232296_13232513_13237119_13237331_13244302_13245573_13247297_13247446_13250704_13250849_13251439_13251542_13254398_13254588_13256956_13257135_13260310_13260415_13291530_13291704_13294832_13294938_13356192_13356250_13444161
ENSMUSG00000005886.15_13	chr1	-	5134	10	ISM	ENSMUSG00000005886.15	ENSMUST00000081713.11	8171	22	210229	21	-11192	-21	3prime_fragment	FALSE	canonical	3	44	junction_3	6.58280588604383	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGGCTTTAGAGATTTTA	NA	False	NA	-20	True	AATAAA	-21	NA	13232434	13209349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_13212997_13217098_13217189_13218540_13218740_13219154_13219333_13220913_13221143_13222602_13222681_13223020_13223300_13226593_13226760_13230384_13230515_13232296
ENSMUSG00000005886.15_14	chr1	-	4003	13	ISM	ENSMUSG00000005886.15	ENSMUST00000006037.13	4897	23	199480	-1197	-23585	1197	3prime_fragment	FALSE	canonical	3	44	junction_3	7.86827314105339	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGCCCACTTTGATGGT	NA	False	NA	-9	True	AATAAA	-22	NA	13244827	13211501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_13212997_13217098_13217189_13218540_13218740_13219154_13219333_13220913_13221143_13222602_13222681_13223020_13223300_13226593_13226760_13230384_13230515_13232296_13232513_13235119_13235327_13237119_13237331_13244302
ENSMUSG00000005886.15_19	chr1	-	5388	11	ISM	ENSMUSG00000005886.15	ENSMUST00000006037.13	4897	23	209012	-3349	-14053	-21	3prime_fragment	FALSE	canonical	3	44	junction_3	6.65507325278993	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGGCTTTAGAGATTTTA	NA	False	NA	-20	True	AATAAA	-21	NA	13235295	13209349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_13212997_13217098_13217189_13218540_13218740_13219154_13219333_13220913_13221143_13222602_13222681_13223020_13223300_13226593_13226760_13230384_13230515_13232296_13232513_13235119
ENSMUSG00000005886.15_21	chr1	-	3812	3	ISM	ENSMUSG00000005886.15	ENSMUST00000081713.11	8171	22	224043	26	111	-26	3prime_fragment	FALSE	canonical	3	47	junction_1	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTACATGGCTTTAGAGA	7343	False	NA	-25	True	AATAAA	-16	NA	13218620	13209354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_13212997_13217098_13217189_13218540
ENSMUSG00000005886.15_3	chr1	-	2617	1	ISM	ENSMUSG00000005886.15	ENSMUST00000081713.11	8171	22	230696	22	4887	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGGCTTTAGAGATTTT	5129	False	NA	-21	True	AATAAA	-20	NA	13211967	13209350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_13209400_13212000
ENSMUSG00000005886.15_4	chr1	-	8171	23	FSM	ENSMUSG00000005886.15	ENSMUST00000006037.13	4897	23	42	-3316	-12	0	multi-exon	FALSE	canonical	3	44	junction_3	7.80826538127789	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCATTTAATAAATTTTAAT	NA	False	NA	-53	True	AATAAA	-18	NA	13444265	13209382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_13212997_13217098_13217189_13218540_13218740_13219154_13219333_13220913_13221143_13222602_13222681_13223020_13223300_13226593_13226760_13230384_13230515_13232296_13232513_13235119_13235327_13237119_13237331_13244302_13245573_13247297_13247446_13250704_13250849_13251439_13251542_13254398_13254588_13256956_13257135_13260310_13260415_13291530_13291704_13294832_13294938_13356192_13356250_13444161
ENSMUSG00000005892.5_0	chr6	-	1380	3	FSM	ENSMUSG00000005892.5	ENSMUST00000006046.5	1384	3	3	1	3	-1	multi-exon	FALSE	canonical	3	80	junction_1	3.5	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTGCTTTGCTCTTCT	NA	False	NA	-14	True	AATAAA	-14	NA	92221628	92219042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_92220107_92220652_92220869_92221528
ENSMUSG00000005893.15_1	chr6	+	7617	15	FSM	ENSMUSG00000005893.15	ENSMUST00000113460.8	7647	15	29	1	29	-1	multi-exon	FALSE	canonical	3	17	junction_1	9.34732309164457	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGCTGCTCATC	NA	False	NA	12	True	ATTAAA	-14	NA	92068399	92150037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_92068724_92115967_92116008_92116760_92116872_92126584_92126786_92129295_92129399_92131315_92131496_92133552_92133701_92134386_92134481_92135310_92135445_92136192_92136371_92137299_92137422_92138893_92139034_92140101_92140240_92141168_92141275_92144439
ENSMUSG00000005893.15_12	chr6	+	7037	12	ISM	ENSMUSG00000005893.15	ENSMUST00000113460.8	7647	15	58314	6	3977	-6	3prime_fragment	FALSE	canonical	3	37	junction_1	6.32978006746517	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTAGTATGTGTGCTGC	NA	False	NA	7	True	ATTAAA	-9	NA	92126684	92150032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_92126786_92129295_92129399_92131315_92131496_92133552_92133701_92134386_92134481_92135310_92135445_92136192_92136371_92137299_92137422_92138893_92139034_92140101_92140240_92141168_92141275_92144439
ENSMUSG00000005893.15_17	chr6	+	3772	1	ISM	ENSMUSG00000005893.15	ENSMUST00000113460.8	7647	15	77895	1	5108	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGCTGCTCATC	9414	False	NA	12	True	ATTAAA	-14	NA	92146265	92150037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_92146300_92150000
ENSMUSG00000005893.15_25	chr6	+	6820	10	ISM	ENSMUSG00000005893.15	ENSMUST00000113460.8	7647	15	62958	6	-2633	-6	3prime_fragment	FALSE	canonical	3	37	junction_3	6.21428064627092	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTAGTATGTGTGCTGC	NA	False	NA	7	True	ATTAAA	-9	NA	92131328	92150032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_92131496_92133552_92133701_92134386_92134481_92135310_92135445_92136192_92136371_92137299_92137422_92138893_92139034_92140101_92140240_92141168_92141275_92144439
ENSMUSG00000005893.15_3	chr6	+	7699	16	NIC	ENSMUSG00000005893.15	novel	7647	15	NA	NA	26	-6	combination_of_known_splicesites	FALSE	canonical	3	24	junction_1	9.13503633757901	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTAGTATGTGTGCTGC	NA	False	NA	7	True	ATTAAA	-9	NA	92068396	92150032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_92068724_92082262_92082347_92115967_92116008_92116760_92116872_92126584_92126786_92129295_92129399_92131315_92131496_92133552_92133701_92134386_92134481_92135310_92135445_92136192_92136371_92137299_92137422_92138893_92139034_92140101_92140240_92141168_92141275_92144439
ENSMUSG00000005897.15_0	chr10	+	2289	14	FSM	ENSMUSG00000005897.15	ENSMUST00000105290.9	3732	14	-84	1527	-84	3	multi-exon	FALSE	canonical	3	23	junction_4	6	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGCGTTCTCTTCCTGTT	NA	False	NA	3	True	AATAAA	-19	NA	93983800	94031546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_93983965_93992768_93992842_93998111_93998307_93999590_93999670_94001279_94001460_94003271_94003420_94003499_94003591_94006910_94007096_94007839_94008000_94017355_94017478_94024010_94024151_94026480_94026619_94028696_94028803_94031038
ENSMUSG00000005897.15_1	chr10	+	2215	13	NIC	ENSMUSG00000005897.15	novel	3732	14	NA	NA	-132	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	10.3289641300568	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGCGTTCTCTTCCTGTT	NA	False	NA	3	True	AATAAA	-19	NA	93983752	94031546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_93983965_93992768_93992842_93998111_93998307_93999590_93999670_94001279_94001460_94003271_94003420_94003499_94003591_94006910_94007096_94007839_94008000_94024010_94024151_94026480_94026619_94028696_94028803_94031038
ENSMUSG00000005899.15_6	chr16	+	3113	18	NIC	ENSMUSG00000005899.15	novel	4532	19	NA	NA	0	151	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	64.5519023490851	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTCTGGGCTGAATCT	NA	False	NA	3	True	AATAAA	-16	NA	17437223	17461362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_17437299_17439305_17439390_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
ENSMUSG00000005899.15_7	chr16	+	3199	19	FSM	ENSMUSG00000005899.15	ENSMUST00000163476.10	4532	19	4	1329	1	151	multi-exon	FALSE	canonical	3	223	junction_5	25.2948660188897	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTCTGGGCTGAATCT	NA	False	NA	3	True	AATAAA	-16	NA	17437224	17461362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
ENSMUSG00000005907.15_0	chr5	+	4079	24	NIC	ENSMUSG00000005907.15	novel	4555	24	NA	NA	48	127	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	17.7117222191902	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTACGTCAATGGTGGA	NA	False	NA	1	True	ATTAAA	-9	NA	3646246	3687088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_3646367_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715_3683947_3685314_3685513_3685779_3685911_3686770
ENSMUSG00000005907.15_2	chr5	+	3622	21	ISM	ENSMUSG00000005907.15	ENSMUST00000121291.8	4555	24	252	3176	-53	-1855	5prime_fragment	FALSE	canonical	3	55	junction_8	11.6275534829989	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATGCCAATTAGTCAT	NA	False	NA	2	True	AATAAA	-17	NA	3646317	3684056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715
ENSMUSG00000005907.15_3	chr5	+	4159	24	FSM	ENSMUSG00000005907.15	ENSMUST00000121291.8	4555	24	253	143	-52	128	multi-exon	FALSE	canonical	3	55	junction_8	11.5830199691965	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTACGTCAATGGTGGAC	NA	False	NA	2	True	ATTAAA	-10	NA	3646318	3687089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715_3683947_3685314_3685513_3685779_3685911_3686770
ENSMUSG00000005917.16_1	chr11	-	2786	5	FSM	ENSMUSG00000005917.16	ENSMUST00000006071.14	2789	5	-9	12	-9	-7	multi-exon	FALSE	canonical	2	4	junction_1	0.433012701892219	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGCTTGTCAGCGTTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	21951624	21944775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_21947059_21948369_21948522_21949379_21949586_21951121_21951190_21951547
ENSMUSG00000005936.20_0	chr17	+	3802	7	FSM	ENSMUSG00000005936.20	ENSMUST00000118762.9	3853	7	48	3	1	-3	multi-exon	FALSE	canonical	3	347	junction_1	75.1962247870345	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTCTTGTTATTTAATA	NA	False	NA	NA	False	AATAAA	-13	NA	29171443	29188520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29171544_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUSG00000005936.20_1	chr17	+	3977	8	FSM	ENSMUSG00000005936.20	ENSMUST00000233197.2	4196	8	212	7	1	-7	multi-exon	FALSE	canonical	3	151	junction_2	164.609370626217	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTCTCTTGTTATTT	NA	False	NA	NA	False	AATAAA	-9	NA	29171443	29188516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29171544_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUSG00000005936.20_18	chr17	+	3586	6	ISM	ENSMUSG00000005936.20	ENSMUST00000118762.9	3853	7	9108	3	8314	-3	3prime_fragment	FALSE	canonical	3	466	junction_4	47.1788088022578	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTCTTGTTATTTAATA	NA	False	NA	NA	False	AATAAA	-13	NA	29180503	29188520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUSG00000005936.20_22	chr17	+	2316	1	ISM	ENSMUSG00000005936.20	ENSMUST00000233197.2	4196	8	14974	2	14016	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTCTTGTTATTTAATAG	NA	False	NA	NA	False	AATAAA	-14	NA	29186205	29188521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29186200_29188500
ENSMUSG00000005947.12_1	chr11	+	786	5	ISM	ENSMUSG00000005947.12	ENSMUST00000006101.4	3845	31	47839	3	47839	-3	3prime_fragment	FALSE	canonical	3	28	junction_3	3.24037034920393	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTATGTTGTTTGAG	NA	False	NA	6	True	ATTAAA	-15	NA	73029247	73038269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_73029338_73029592_73029689_73031492_73031589_73036366_73036478_73037876
ENSMUSG00000005949.10_11	chr11	-	1734	3	ISM	ENSMUSG00000005949.10	ENSMUST00000108476.8	2723	12	12587	6	2351	-6	3prime_fragment	FALSE	canonical	3	67	junction_2	5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTACACTCGGAACGTT	NA	False	NA	-7	True	ATTAAA	-17	NA	73077281	73074428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_73075878_73076063_73076182_73077114
ENSMUSG00000005949.10_13	chr11	-	2698	12	FSM	ENSMUSG00000005949.10	ENSMUST00000108476.8	2723	12	19	6	-2	-6	multi-exon	FALSE	canonical	3	14	junction_11	20.3534877308514	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTACACTCGGAACGTT	4484	False	NA	-7	True	ATTAAA	-17	NA	73089849	73074428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73087924_73088079_73089743
ENSMUSG00000005949.10_16	chr11	-	1517	2	ISM	ENSMUSG00000005949.10	ENSMUST00000108476.8	2723	12	13737	6	3501	-6	3prime_fragment	FALSE	canonical	3	77	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTACACTCGGAACGTT	NA	False	NA	-7	True	ATTAAA	-17	NA	73076131	73074428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_73075878_73076063
ENSMUSG00000005949.10_2	chr11	-	2545	11	FSM	ENSMUSG00000005949.10	ENSMUST00000006103.9	2570	11	18	7	-3	-6	multi-exon	FALSE	canonical	3	46	junction_10	9.23525852372309	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTACACTCGGAACGTT	4483	False	NA	-7	True	ATTAAA	-17	NA	73089850	73074428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73089743
ENSMUSG00000005949.10_4	chr11	-	2379	10	NIC	ENSMUSG00000005949.10	novel	2723	12	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	20.4673784409952	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTCGGAACGTTTACTAG	4484	False	NA	-1	True	ATTAAA	-23	NA	73089849	73074422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_73075878_73076063_73076182_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73089743
ENSMUSG00000005949.10_6	chr11	-	4540	9	NIC	ENSMUSG00000005949.10	novel	2570	11	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	46	junction_8	9.19238815542512	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTACACTCGGAACGTT	4483	False	NA	-7	True	ATTAAA	-17	NA	73089850	73074428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_73075878_73076063_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73089743
ENSMUSG00000005950.15_0	chr11	+	2545	13	FSM	ENSMUSG00000005950.15	ENSMUST00000006104.10	2395	13	-160	10	-160	-10	multi-exon	FALSE	canonical	2	4	junction_5	3.62476052848859	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAAAGCTGTTTCTGAC	3208	False	NA	2	True	GATAAA	-12	NA	73051086	73063501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_73051560_73055681_73055833_73056365_73056438_73056968_73057045_73057130_73057228_73057387_73057469_73057738_73057878_73058319_73058454_73058704_73058799_73058914_73058981_73061241_73061325_73061908_73062077_73062590
ENSMUSG00000005950.15_5	chr11	+	2330	1	NIC	ENSMUSG00000005950.15	novel	2395	13	NA	NA	9765	-6	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTGTTTCTGACCTGT	NA	False	NA	6	True	GATAAA	-16	NA	73061175	73063505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_73061200_73063500
ENSMUSG00000005951.14_0	chr11	+	2797	7	FSM	ENSMUSG00000005951.14	ENSMUST00000006105.7	2808	7	2	9	2	0	multi-exon	TRUE	canonical	0	0	junction_6	1.34370962471642	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTTTATCCCTTTGATG	4994	False	NA	NA	False	AATAAA	-13	NA	73090287	73115328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_73090507_73094747_73094890_73104156_73104341_73104880_73105034_73105790_73105967_73108624_73108826_73113606
ENSMUSG00000005958.16_0	chr16	+	4154	16	FSM	ENSMUSG00000005958.16	ENSMUST00000006112.7	4185	16	24	7	24	-7	multi-exon	FALSE	canonical	3	140	junction_8	11.1167541225945	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGACTCTTGCCCCTGC	NA	False	NA	4	True	AATAAA	-7	NA	21023528	21042047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_21024014_21031639_21031705_21033074_21033748_21035945_21036102_21036764_21037116_21037244_21037370_21037543_21037704_21037788_21037898_21038204_21038258_21039169_21039293_21039396_21039645_21040034_21040251_21040376_21040527_21040614_21040809_21040898_21041055_21041157
ENSMUSG00000005958.16_31	chr16	+	3442	14	ISM	ENSMUSG00000005958.16	ENSMUST00000006112.7	4185	16	9735	4	2073	-4	3prime_fragment	FALSE	canonical	3	140	junction_6	11.0346415260971	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGACTCTTGCCCCTGCTCG	NA	False	NA	7	True	AATAAA	-10	NA	21033239	21042050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_21033748_21035945_21036102_21036764_21037116_21037244_21037370_21037543_21037704_21037788_21037898_21038204_21038258_21039169_21039293_21039396_21039645_21040034_21040251_21040376_21040527_21040614_21040809_21040898_21041055_21041157
ENSMUSG00000005968.15_0	chr3	-	2517	12	FSM	ENSMUSG00000005968.15	ENSMUST00000196733.5	2555	12	38	0	-31	0	multi-exon	FALSE	canonical	3	51	junction_9	16.8728840118112	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	6478	False	NA	-7	True	AATAAA	-14	NA	94566141	94520065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94566031
ENSMUSG00000005968.15_1	chr3	-	2601	13	FSM	ENSMUSG00000005968.15	ENSMUST00000006123.11	2631	13	25	5	25	-3	multi-exon	FALSE	canonical	3	34	junction_11	22.9474036294596	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTTTGCCCCGTGGGTC	6466	False	NA	-10	True	AATAAA	-11	NA	94566153	94520068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94546701_94546777_94566031
ENSMUSG00000005968.15_6	chr3	-	2517	12	Fusion	ENSMUSG00000081355.2_ENSMUSG00000005968.15	novel	2555	12	NA	NA	-34	-6	multi-exon	FALSE	non_canonical	3	14	junction_10	27.6572887289176	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCTCTTTGCCCCGTGG	NA	False	NA	-13	True	AATAAA	-8	NA	94665457	94520071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94627329_94627396_94629191_94629282_94630124_94630212_94640266_94640369_94665341
ENSMUSG00000005973.7_0	chr2	-	2034	6	FSM	ENSMUSG00000005973.7	ENSMUST00000006128.7	2720	6	47	639	47	-1	multi-exon	FALSE	canonical	3	1454	junction_3	103.827549330609	2092	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCATGTGTCTTGTGGTG	NA	False	NA	-5	True	AATAAA	-18	NA	105229617	105217274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105229314
ENSMUSG00000005981.12_1	chr16	-	2281	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	29	10	-23	-10	multi-exon	TRUE	canonical	3	963	junction_15	112.803285922348	1594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCCCGTGGCAGACGTTT	NA	False	NA	-13	True	ATTAAA	-12	NA	3895662	3857844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ENSMUSG00000005981.12_3	chr16	-	3025	17	NIC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	-23	-10	intron_retention	FALSE	canonical	3	963	junction_14	113.904410993385	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCCCGTGGCAGACGTTT	NA	False	NA	-13	True	ATTAAA	-12	NA	3895662	3857844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ENSMUSG00000005982.15_2	chr16	+	2370	7	FSM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	-21	1	3	0	multi-exon	FALSE	canonical	1	49	junction_5	41.1774614726713	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGTCTCTAGTTATTGG	NA	False	NA	38	True	AATAAA	-19	NA	3702525	3722633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3719990_3721329
ENSMUSG00000005982.15_28	chr16	+	1385	1	NIC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	9008	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCTGTCTCTAGTTATT	NA	False	NA	36	True	AATAAA	-17	NA	3721246	3722631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_3721200_3722600
ENSMUSG00000005982.15_4	chr16	+	2383	7	NNC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	1	23	junction_6	52.451300163951	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCTGTCTCTAGTTATT	NA	False	NA	36	True	AATAAA	-17	NA	3702520	3722631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3720000_3721329
ENSMUSG00000005982.15_6	chr16	+	3711	6	ISM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	-22	1	2	0	intron_retention	FALSE	canonical	1	49	junction_5	40.0149971885542	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGTCTCTAGTTATTGG	NA	False	NA	38	True	AATAAA	-19	NA	3702524	3722633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646
ENSMUSG00000005986.17_0	chr19	-	2118	15	FSM	ENSMUSG00000005986.17	ENSMUST00000056888.13	2139	15	17	4	17	-2	multi-exon	FALSE	canonical	2	3	junction_3	4.70128076340124	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTAGGCTTGCTGTCCTGCG	877	False	NA	-9	True	AATAAA	-13	NA	4333146	4320211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4320578_4320821_4320914_4320993_4321158_4321246_4321364_4321469_4321628_4322597_4322729_4322827_4322890_4323048_4323131_4323563_4323631_4330564_4330755_4330964_4331109_4331190_4331237_4331945_4332071_4332196_4332333_4332908
ENSMUSG00000006005.19_0	chr1	+	7568	52	FSM	ENSMUSG00000006005.19	ENSMUST00000124973.9	7430	52	-26	-112	-26	0	multi-exon	TRUE	canonical	3	82	junction_1	100.054291298415	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTATCACTGTTTTCT	NA	False	NA	17	True	AATAAA	-16	NA	150268562	150325678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_150268765_150269106_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386_150297554_150298278_150298432_150298807_150298925_150299236_150299441_150299547_150299733_150300413_150300562_150301387_150301526_150302613_150302746_150303870_150304002_150305085_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
ENSMUSG00000006005.19_17	chr1	+	7366	51	FSM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	106	8	-28	0	multi-exon	FALSE	canonical	3	414	junction_6	73.7537117710017	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTATCACTGTTTTCT	NA	False	NA	17	True	AATAAA	-16	NA	150269106	150325678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386_150297554_150298278_150298432_150298807_150298925_150299236_150299441_150299547_150299733_150300413_150300562_150301387_150301526_150302613_150302746_150303870_150304002_150305085_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
ENSMUSG00000006005.19_18	chr1	+	6269	41	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	106	9623	-28	0	5prime_fragment	FALSE	canonical	3	414	junction_6	68.8321826982117	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTTTGTTTGTTTGGCT	NA	False	NA	15	True	AATAAA	-16	NA	150269106	150316063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386_150297554_150298278_150298432_150298807_150298925_150299236_150299441_150299547_150299733_150300413_150300562_150301387_150301526_150302613_150302746_150303870_150304002_150305085_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817
ENSMUSG00000006010.15_1	chr1	-	3001	14	NIC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_13	31.3627374725987	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTAATGTGGAATTTTA	983	False	NA	NA	False	AATAAA	-13	NA	150268481	150237063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268354
ENSMUSG00000006010.15_3	chr1	-	2924	14	FSM	ENSMUSG00000006010.15	ENSMUST00000111913.9	3273	14	341	8	4	0	multi-exon	FALSE	canonical	3	106	junction_9	14.7515920312223	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTAATGTGGAATTTTA	974	False	NA	NA	False	AATAAA	-13	NA	150268490	150237063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
ENSMUSG00000006010.15_6	chr1	-	2884	14	NIC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	32	junction_12	29.9368170945323	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCAACATTAATGTGGAA	971	False	NA	NA	False	AATAAA	-8	NA	150268493	150237068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264371_150265986_150266108_150268440
ENSMUSG00000006019.16_0	chr7	-	3806	17	FSM	ENSMUSG00000006019.16	ENSMUST00000163968.8	3801	17	-5	0	0	0	multi-exon	FALSE	canonical	3	51	junction_16	13.8562655051785	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGCCTCCCTCACCCT	8437	False	NA	-1	True	AATAAA	-19	NA	15955962	15931145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_15931356_15932490_15932627_15932769_15932947_15933599_15933885_15935854_15935962_15937096_15937215_15937498_15937673_15937791_15938029_15939321_15939424_15939912_15940107_15944438_15944614_15946733_15946952_15948266_15948370_15949148_15949404_15950143_15950456_15951912_15952876_15955922
ENSMUSG00000006019.16_3	chr7	-	3768	16	ISM	ENSMUSG00000006019.16	ENSMUST00000094816.3	4073	17	3041	-3	3041	0	3prime_fragment	FALSE	canonical	3	60	junction_12	12.4347184215093	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGCCTCCCTCACCCT	6948	False	NA	-1	True	AATAAA	-19	NA	15952877	15931145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_15931356_15932490_15932627_15932769_15932947_15933599_15933885_15935854_15935962_15937096_15937215_15937498_15937673_15937791_15938029_15939321_15939424_15939912_15940107_15944438_15944614_15946733_15946952_15948266_15948370_15949148_15949404_15950143_15950456_15951912
ENSMUSG00000006019.16_4	chr7	-	3887	15	NIC	ENSMUSG00000006019.16	novel	3801	17	NA	NA	3041	0	intron_retention	FALSE	canonical	3	60	junction_11	12.051970793194	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGCCTCCCTCACCCT	6948	False	NA	-1	True	AATAAA	-19	NA	15952877	15931145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_15931356_15932490_15932627_15932769_15932947_15933599_15933885_15935854_15935962_15937096_15937215_15937498_15938029_15939321_15939424_15939912_15940107_15944438_15944614_15946733_15946952_15948266_15948370_15949148_15949404_15950143_15950456_15951912
ENSMUSG00000006019.16_8	chr7	-	4116	17	NIC	ENSMUSG00000006019.16	novel	3801	17	NA	NA	-9	-7	combination_of_known_splicesites	FALSE	canonical	3	6	junction_16	21.4490675788016	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAATTAATTAATTGTT	8428	False	NA	-11	True	AAGAAA	-35	NA	15955971	15931078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_15931356_15932490_15932627_15932769_15932947_15933599_15933885_15935854_15935962_15937096_15937215_15937498_15937673_15937791_15938029_15939321_15939424_15939912_15940107_15944438_15944614_15946733_15946952_15948266_15948370_15949148_15949404_15950143_15950456_15951912_15953110_15955922
ENSMUSG00000006021.6_0	chr7	+	1629	12	FSM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	-1	2	-1	-2	multi-exon	FALSE	canonical	3	76	junction_5	5.62609034427847	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCCTTTGTCTGGCAAG	NA	False	NA	30	True	NA	NA	NA	15853818	15861439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794_15854850_15856959_15857036_15857124_15857199_15857696_15857807_15857879_15857958_15858641_15858718_15859637_15859774_15859861_15860033_15861042
ENSMUSG00000006024.14_2	chr7	+	1518	11	FSM	ENSMUSG00000006024.14	ENSMUST00000006181.7	2517	11	148	851	-2	385	multi-exon	TRUE	canonical	3	1130	junction_8	65.9754499795189	1127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGCCTCTTGAGCTGTCC	NA	False	NA	26	True	AATAAA	-16	NA	15832530	15851049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
ENSMUSG00000006050.13_0	chr18	-	880	5	FSM	ENSMUSG00000006050.13	ENSMUST00000173875.9	1979	5	526	573	1	-5	multi-exon	FALSE	canonical	3	1172	junction_4	156.810992918226	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGAGCCATTCTGATG	NA	False	NA	-17	True	NA	NA	NA	36803342	36800306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056_36803183_36803300
ENSMUSG00000006050.13_4	chr18	-	829	4	FSM	ENSMUSG00000006050.13	ENSMUST00000173202.3	1299	4	478	-8	146	8	multi-exon	FALSE	canonical	3	1470	junction_2	40.4227658628155	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGGGTAGGAAAGATGAGC	NA	False	NA	-27	True	NA	NA	NA	36803183	36800316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056
ENSMUSG00000006056.14_0	chr11	-	1568	6	FSM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	7	46	5	-46	multi-exon	FALSE	canonical	3	294	junction_5	66.2751838926155	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATTTTGTGCTGTGTTG	4218	False	NA	-8	True	NA	NA	NA	96002783	95990197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256_95998431_96002762
ENSMUSG00000006056.14_1	chr11	-	1548	5	ISM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	4359	46	4357	-46	3prime_fragment	FALSE	canonical	3	408	junction_2	31.4722099637124	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATTTTGTGCTGTGTTG	8570	False	NA	-8	True	NA	NA	NA	95998431	95990197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256
ENSMUSG00000006056.14_3	chr11	-	962	1	ISM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	11631	46	11629	-46	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATTTTGTGCTGTGTTG	NA	False	NA	-8	True	NA	NA	NA	95991159	95990197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_95990200_95991200
ENSMUSG00000006057.16_1	chr11	-	171	1	ISM	ENSMUSG00000006057.16	ENSMUST00000090541.12	4715	5	6631	17	5998	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAGCTTTAAAATAT	6589	False	NA	NA	False	NA	NA	NA	95959865	95959694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_95959700_95959900
ENSMUSG00000006057.16_3	chr11	-	594	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	3	-1	3	1	multi-exon	FALSE	canonical	3	5157	junction_4	2293.78611688187	1016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATGTGCCTGTGCCTG	3533	False	NA	-8	True	NA	NA	NA	95966442	95963814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
ENSMUSG00000006057.16_4	chr11	-	536	4	FSM	ENSMUSG00000006057.16	ENSMUST00000178611.8	4660	4	2	4122	2	1	multi-exon	FALSE	canonical	3	9053	junction_3	812.300437030536	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATGTGCCTGTGCCTG	4114	False	NA	-8	True	NA	NA	NA	95965861	95963814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812
ENSMUSG00000006057.16_6	chr11	-	557	5	FSM	ENSMUSG00000006057.16	ENSMUST00000090541.12	4715	5	21	4137	21	1	multi-exon	FALSE	canonical	3	2808	junction_4	3276.79938163751	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATGTGCCTGTGCCTG	3500	False	NA	-8	True	NA	NA	NA	95966475	95963814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966452
ENSMUSG00000006058.11_0	chr11	+	926	8	FSM	ENSMUSG00000006058.11	ENSMUST00000006217.10	1004	8	55	23	-11	-23	multi-exon	FALSE	canonical	3	665	junction_5	23.859281341282	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTTCATTCCAAG	3252	False	NA	-2	True	AATAAA	-20	NA	95925765	95938233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95937105_95937181_95938020
ENSMUSG00000006058.11_1	chr11	+	849	7	FSM	ENSMUSG00000006058.11	ENSMUST00000107700.4	849	7	-23	23	-9	-23	multi-exon	FALSE	canonical	3	60	junction_6	239.545866635645	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTTCATTCCAAG	3254	False	NA	-2	True	AATAAA	-20	NA	95925767	95938233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95938020
ENSMUSG00000006095.13_0	chr7	-	899	6	FSM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	510	7	510	-1	multi-exon	FALSE	canonical	3	839	junction_4	26.4529771481397	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGTTGTGCAAGTCTCT	NA	False	NA	-12	True	NA	NA	NA	29931187	29923562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004
ENSMUSG00000006127.10_0	chr11	+	2639	12	FSM	ENSMUSG00000006127.10	ENSMUST00000006286.9	2679	12	32	8	-9	0	multi-exon	FALSE	canonical	3	99	junction_6	22.5527847321246	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTCTCGTGTGACTCCT	5471	False	NA	19	True	TATAAA	-10	NA	75521845	75539689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
ENSMUSG00000006127.10_2	chr11	+	2660	12	NIC	ENSMUSG00000006127.10	novel	2679	12	NA	NA	-17	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	44.0495588668449	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTCTCGTGTGACTCCTT	5463	False	NA	20	True	TATAAA	-11	NA	75521837	75539690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537762_75538018_75538103_75538227_75538333_75538477
ENSMUSG00000006134.5_0	chr16	+	5008	3	FSM	ENSMUSG00000006134.5	ENSMUST00000006293.5	5042	3	24	10	24	-10	multi-exon	FALSE	canonical	3	254	junction_1	8	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCAGCAGCCTCGGTGTT	3483	False	NA	10	True	AATAAA	-17	NA	17269874	17305288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17270653_17286756_17287223_17301524
ENSMUSG00000006134.5_15	chr16	+	3966	2	ISM	ENSMUSG00000006134.5	ENSMUST00000006293.5	5042	3	17034	146	16545	-146	3prime_fragment	FALSE	canonical	3	270	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGAGTGTCTTTTCTTA	NA	False	NA	9	True	ATTAAA	-20	NA	17286884	17305152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_17287223_17301524
ENSMUSG00000006134.5_17	chr16	+	2961	1	ISM	ENSMUSG00000006134.5	ENSMUST00000006293.5	5042	3	32482	5	31993	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCCTCGGTGTTTCAGT	NA	False	NA	15	True	AATAAA	-22	NA	17302332	17305293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_17302300_17305300
ENSMUSG00000006134.5_2	chr16	+	4536	2	FSM	ENSMUSG00000006134.5	ENSMUST00000231629.2	780	2	-466	-3290	23	-17	multi-exon	FALSE	canonical	3	14	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGGCGTGGCAGCAGCCT	3482	False	NA	3	True	AATAAA	-10	NA	17269873	17305281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17270653_17301524
ENSMUSG00000006169.21_0	chr11	+	3437	12	FSM	ENSMUSG00000006169.21	ENSMUST00000109261.11	3452	12	7	8	7	-8	multi-exon	FALSE	canonical	3	124	junction_10	116.535881042055	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCAACGTGGGCCCGCC	NA	False	NA	NA	False	ATTAAA	-10	NA	45742797	45801444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_45743020_45774536_45774642_45775158_45775256_45777257_45777367_45778212_45778378_45781448_45781627_45784697_45784945_45785886_45785957_45793037_45793113_45797007_45797295_45798666_45798872_45799767
ENSMUSG00000006169.21_2	chr11	+	3377	12	FSM	ENSMUSG00000006169.21	ENSMUST00000109260.3	3398	12	13	8	13	-8	multi-exon	FALSE	canonical	3	378	junction_6	52.2164914894813	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCAACGTGGGCCCGCC	NA	False	NA	NA	False	ATTAAA	-10	NA	45742803	45801444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_45743020_45774536_45774642_45775158_45775256_45777257_45777367_45778212_45778378_45781448_45781627_45784697_45784945_45785886_45785957_45793037_45793113_45797007_45797295_45798720_45798872_45799767
ENSMUSG00000006179.10_0	chr13	-	1564	5	FSM	ENSMUSG00000006179.10	ENSMUST00000150547.3	1159	5	-30	-375	-30	-3	multi-exon	FALSE	canonical	2	4	junction_2	4.63680924774785	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCATTTCTCTCTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	22190612	22186345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_22186981_22187095_22187242_22187315_22187496_22189260_22189403_22190151
ENSMUSG00000006179.10_1	chr13	-	1486	3	NIC	ENSMUSG00000006179.10	novel	1159	5	NA	NA	-21	-4	intron_retention	FALSE	canonical	0	0	junction_2	7.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCATTTCTCTCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	22190603	22186346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_22186981_22187095_22187496_22190151
ENSMUSG00000006191.18_0	chr13	-	2595	16	FSM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	24	10	-3	-10	multi-exon	FALSE	canonical	3	147	junction_3	17.6728291138937	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGAAAACACTGTGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	30039633	29509293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
ENSMUSG00000006191.18_1	chr13	-	2538	15	NIC	ENSMUSG00000006191.18	novel	2629	16	NA	NA	1	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	48.9583850774079	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGAAAACACTGTGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	30039639	29509293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_29510212_29538612_29538778_29541482_29541567_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
ENSMUSG00000006191.18_21	chr13	-	3164	5	NIC	ENSMUSG00000006191.18	novel	694	6	NA	NA	1	1035	intron_retention	FALSE	canonical	3	9	junction_1	84.3593504005335	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTGTGTATAGAAATGT	NA	False	NA	NA	False	AATAAA	-12	NA	30039639	30019942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_30022686_30030210_30030324_30033921_30034092_30038880_30038925_30039545
ENSMUSG00000006200.4_0	chrX	+	871	4	FSM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	135	4	135	-4	multi-exon	FALSE	canonical	3	92	junction_1	47.588514020367	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTTGGCTCCATTGTC	NA	False	NA	10	True	AATAAA	-14	NA	36915921	36918730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36916057_36916242_36916703_36917291_36917338_36918500
ENSMUSG00000006200.4_1	chrX	+	713	3	ISM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	479	4	479	-4	3prime_fragment	FALSE	canonical	3	187	junction_2	5.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTTGGCTCCATTGTC	NA	False	NA	10	True	AATAAA	-14	NA	36916265	36918730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_36916703_36917291_36917338_36918500
ENSMUSG00000006200.4_2	chrX	+	1315	2	NIC	ENSMUSG00000006200.4	novel	1010	4	NA	NA	460	-10	intron_retention	FALSE	canonical	3	187	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGAATATGTTGGCTCC	NA	False	NA	4	True	AATAAA	-8	NA	36916246	36918724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_36917338_36918500
ENSMUSG00000006205.14_1	chr7	+	2018	9	FSM	ENSMUSG00000006205.14	ENSMUST00000006367.8	2041	9	16	7	16	-7	multi-exon	FALSE	canonical	3	73	junction_3	16.015617378047	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTAGATTTTGGCGTGCTT	6638	False	NA	12	True	ATTAAA	-13	NA	130537948	130587383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_130538474_130563242_130563343_130563702_130563908_130581030_130581226_130581681_130581715_130583386_130583502_130583966_130584025_130585389_130585486_130586692
ENSMUSG00000006215.13_1	chr4	+	2766	15	ISM	ENSMUSG00000006215.13	ENSMUST00000006377.13	2722	16	33	2	3	-2	intron_retention	FALSE	canonical	3	129	junction_3	18.407102666401	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTTGCCTGTGGTCCCTG	NA	False	NA	3	True	AATAAA	-13	NA	141171997	141194534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984
ENSMUSG00000006215.13_2	chr4	+	2689	16	FSM	ENSMUSG00000006215.13	ENSMUST00000006377.13	2722	16	31	2	1	-2	multi-exon	TRUE	canonical	3	129	junction_3	19.5436832648187	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTTGCCTGTGGTCCCTG	NA	False	NA	3	True	AATAAA	-13	NA	141171995	141194534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
ENSMUSG00000006215.13_47	chr4	+	1724	10	ISM	ENSMUSG00000006215.13	ENSMUST00000006377.13	2722	16	19683	2	-481	-2	3prime_fragment	FALSE	canonical	3	138	junction_1	17.6698110409314	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTTGCCTGTGGTCCCTG	NA	False	NA	3	True	AATAAA	-13	NA	141191647	141194534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
ENSMUSG00000006215.13_54	chr4	+	595	3	ISM	ENSMUSG00000006215.13	ENSMUST00000130482.2	867	7	1019	-154	1019	-2	3prime_fragment	FALSE	canonical	3	182	junction_1	5.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTTGCCTGTGGTCCCTG	72	False	NA	3	True	AATAAA	-13	NA	141193744	141194534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_141193869_141193984_141194075_141194153
ENSMUSG00000006216.11_0	chr4	-	887	6	ISM	ENSMUSG00000006216.11	ENSMUST00000006378.9	2370	20	7993	5	-2664	-5	3prime_fragment	FALSE	canonical	3	74	junction_3	20.1454709550311	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATTAGTGTCCCCTCTC	4471	False	NA	-9	True	AATAAA	-13	NA	141135332	141131668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141131944_141132063_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114
ENSMUSG00000006216.11_1	chr4	-	903	7	NNC	ENSMUSG00000006216.11	novel	2370	20	NA	NA	-2946	-6	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_6	35.5387112878337	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTAGTGTCCCCTCT	4189	False	NA	-10	True	AATAAA	-12	NA	141135614	141131669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_141131944_141132063_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135593
ENSMUSG00000006216.11_14	chr4	-	1218	4	NIC	ENSMUSG00000006216.11	novel	2490	19	NA	NA	-2664	-6	intron_retention	FALSE	canonical	3	74	junction_1	21.5612821717283	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTAGTGTCCCCTCT	4471	False	NA	-10	True	AATAAA	-12	NA	141135332	141131669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_141132447_141132582_141132672_141134399_141134534_141135114
ENSMUSG00000006216.11_15	chr4	-	3094	3	NIC	ENSMUSG00000006216.11	novel	2490	19	NA	NA	-2963	-5	intron_retention	FALSE	canonical	3	53	junction_2	36.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATTAGTGTCCCCTCTC	4172	False	NA	-9	True	AATAAA	-13	NA	141135631	141131668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_141134534_141135114_141135329_141135616
ENSMUSG00000006216.11_2	chr4	-	3135	2	NIC	ENSMUSG00000006216.11	novel	2490	19	NA	NA	-2716	-5	intron_retention	FALSE	canonical	3	126	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATTAGTGTCCCCTCTC	4419	False	NA	-9	True	AATAAA	-13	NA	141135384	141131668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_141134534_141135114
ENSMUSG00000006216.11_6	chr4	-	513	1	NIC	ENSMUSG00000006216.11	novel	453	3	NA	NA	487	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATTAGTGTCCCCTCTC	7622	False	NA	-9	True	AATAAA	-13	NA	141132181	141131668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_141131700_141132200
ENSMUSG00000006216.11_8	chr4	-	908	7	ISM	ENSMUSG00000006216.11	ENSMUST00000006378.9	2370	20	7684	5	-2973	-5	3prime_fragment	FALSE	canonical	3	53	junction_6	23.8146780135464	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATTAGTGTCCCCTCTC	4162	False	NA	-9	True	AATAAA	-13	NA	141135641	141131668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141131944_141132063_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135616
ENSMUSG00000006218.5_0	chr4	+	1496	7	FSM	ENSMUSG00000006218.5	ENSMUST00000006380.5	1433	7	-65	2	-65	-2	multi-exon	FALSE	canonical	3	37	junction_5	7.90393713425292	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAACTTGACCTGGTCT	7121	False	NA	11	True	ATTAAA	-17	NA	141095465	141111484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_141095636_141106988_141107105_141107629_141107666_141107912_141108007_141109637_141109821_141110054_141110166_141110698
ENSMUSG00000006218.5_4	chr4	+	1270	3	ISM	ENSMUSG00000006218.5	ENSMUST00000006380.5	1433	7	13917	2	13917	-2	3prime_fragment	FALSE	canonical	3	37	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAACTTGACCTGGTCT	2345	False	NA	11	True	ATTAAA	-17	NA	141109447	141111484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_141109821_141110054_141110166_141110698
ENSMUSG00000006219.13_0	chr4	-	2962	8	ISM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	2273	0	518	0	3prime_fragment	FALSE	canonical	3	1168	junction_5	184.331002187226	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141323262	141303372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205
ENSMUSG00000006219.13_1	chr4	-	2999	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	37	0	1	0	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	2164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141327198	141303372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
ENSMUSG00000006219.13_2	chr4	-	3090	9	NIC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	-21	-1	combination_of_known_junctions	FALSE	canonical	3	77	junction_8	503.602134005606	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTGTCTTGTTTTTGTC	NA	False	NA	-5	True	AATAAA	-13	NA	141325556	141303373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325424
ENSMUSG00000006219.13_3	chr4	-	3009	9	NIC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	37	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_8	503.602134005606	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141327306	141303372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327256
ENSMUSG00000006221.8_0	chr4	+	1737	3	FSM	ENSMUSG00000006221.8	ENSMUST00000102486.5	2769	3	1028	4	1028	-4	multi-exon	FALSE	canonical	3	12	junction_2	1	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACAGACTTGTGGAGACC	1176	False	NA	NA	False	AATAAA	-9	NA	141149117	141152618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_141149292_141149811_141149946_141151189
ENSMUSG00000006221.8_2	chr4	+	3370	2	NIC	ENSMUSG00000006221.8	novel	2769	3	NA	NA	-82	-1	intron_retention	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGACTTGTGGAGACCCCA	66	False	NA	NA	False	AATAAA	-12	NA	141148007	141152621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_141149946_141151189
ENSMUSG00000006235.7_1	chr9	-	1188	5	ISM	ENSMUSG00000006235.7	ENSMUST00000006397.7	1761	8	1971	4	1029	-4	3prime_fragment	FALSE	canonical	3	6	junction_3	3.89711431702997	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTTGTCTTATTTGTG	NA	False	NA	NA	False	NA	NA	NA	21872831	21870196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21870967_21871056_21871145_21871819_21871908_21871985_21872140_21872743
ENSMUSG00000006235.7_3	chr9	-	1784	7	ISM	ENSMUSG00000006235.7	ENSMUST00000006397.7	1761	8	952	5	10	-5	3prime_fragment	FALSE	canonical	3	6	junction_3	3.85861230093008	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGACTTTGTCTTATTTGT	NA	False	NA	NA	False	NA	NA	NA	21873850	21870197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21870967_21871056_21871145_21871819_21871908_21871985_21872140_21872743_21872902_21872986_21873163_21873499
ENSMUSG00000006235.7_5	chr9	-	2182	5	NIC	ENSMUSG00000006235.7	novel	1761	8	NA	NA	25	-7	intron_retention	FALSE	canonical	3	6	junction_4	3.89711431702997	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGACTTTGTCTTATTT	NA	False	NA	NA	False	NA	NA	NA	21873835	21870199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21870967_21871056_21871145_21871819_21872140_21872743_21872902_21872986
ENSMUSG00000006262.16_0	chr5	+	6763	6	FSM	ENSMUSG00000006262.16	ENSMUST00000006424.8	2705	6	6	-4064	6	-2167	multi-exon	FALSE	canonical	3	27	junction_3	7.75628777186613	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATCCTGCCTTCGCATT	NA	False	NA	5	True	AATAAA	-16	NA	88868735	88909912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_88868981_88891162_88891330_88892915_88893010_88897383_88897518_88901018_88901183_88903953
ENSMUSG00000006262.16_1	chr5	+	5099	5	NIC	ENSMUSG00000006262.16	novel	8967	6	NA	NA	25	2513	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	14.6969384566991	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATATTGGATCAAAAG	NA	False	NA	NA	False	ATTAAA	-17	NA	88868754	88908361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_88868981_88891162_88891330_88897383_88897518_88901018_88901183_88903953
ENSMUSG00000006262.16_4	chr5	+	3065	1	ISM	ENSMUSG00000006262.16	ENSMUST00000113229.8	8967	6	38134	2167	38012	-2167	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATCCTGCCTTCGCATT	NA	False	NA	5	True	AATAAA	-16	NA	88906847	88909912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_88906800_88909900
ENSMUSG00000006269.8_0	chr6	+	1935	14	FSM	ENSMUSG00000006269.8	ENSMUST00000006431.8	1999	14	8	56	8	-56	multi-exon	FALSE	canonical	0	0	junction_2	1.43498139278289	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTATATCATGTGGTTTG	3332	False	NA	NA	False	AAAACA	-35	NA	83719979	83735781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83720185_83726835_83726892_83729088_83729188_83729364_83729459_83729831_83729910_83730748_83730889_83731706_83731809_83732368_83732467_83733169_83733294_83733534_83733686_83733830_83733914_83734832_83734938_83735096_83735227_83735311
ENSMUSG00000006273.15_0	chr8	+	2696	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	123	6	1	-6	multi-exon	TRUE	canonical	3	1214	junction_12	88.1479391228044	2303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTACCTGAAATGACTCT	NA	False	NA	12	True	AATAAA	-16	NA	69541420	69566357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
ENSMUSG00000006276.11_16	chr8	-	2990	23	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	33	junction_2	86.0488161471765	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAAACATGAGACTATCT	NA	False	NA	NA	False	TATAAA	-36	NA	73175301	73094845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_73095369_73099809_73100016_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ENSMUSG00000006276.11_2	chr8	-	3034	24	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_8	97.7241014284603	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGAGACTATCTTCT	NA	False	NA	NA	False	TATAAA	-39	NA	73175302	73094842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_73095369_73099809_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132927_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ENSMUSG00000006276.11_3	chr8	-	3121	24	FSM	ENSMUSG00000006276.11	ENSMUST00000163643.3	3129	24	3	5	-2	-3	multi-exon	FALSE	canonical	3	88	junction_2	82.9540606689901	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACAAAACATGAGACTAT	NA	False	NA	NA	False	TATAAA	-34	NA	73175301	73094847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_73095369_73099809_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ENSMUSG00000006276.11_71	chr8	-	3373	16	FSM	ENSMUSG00000006276.11	ENSMUST00000212590.2	3376	16	-2	5	-2	-5	multi-exon	FALSE	canonical	3	313	junction_2	26.4222128772995	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGAGGTCTTTGTTCAGT	NA	False	NA	NA	False	AATAAA	-8	NA	73175301	73131266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ENSMUSG00000006276.11_8	chr8	-	2779	22	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	69.7814859566126	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACAAAACATGAGACTAT	NA	False	NA	NA	False	TATAAA	-34	NA	73175298	73094847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ENSMUSG00000006276.11_9	chr8	-	2912	23	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	1	-3	combination_of_known_splicesites	FALSE	canonical	3	42	junction_1	80.7011756547953	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACAAAACATGAGACTAT	NA	False	NA	NA	False	TATAAA	-34	NA	73175298	73094847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_73095369_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ENSMUSG00000006281.9_0	chr14	-	6678	46	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	14606	9	-1802	-2	3prime_fragment	FALSE	canonical	2	6	junction_37	10.4075945679757	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTAGAGTGTATGCCCG	115	False	NA	-13	True	TATAAA	-15	NA	51093411	51061524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328_51067406_51067586_51067720_51069188_51069297_51070910_51071025_51071370_51071535_51073448_51073662_51073766_51073921_51074141_51074355_51074494_51074651_51074836_51074937_51075040_51075166_51075980_51076099_51076402_51076644_51078038_51078154_51078425_51078515_51078666_51078801_51079013_51079165_51079321_51079455_51080633_51080727_51081162_51081343_51081479_51081637_51081711_51081888_51081990_51082186_51082308_51082427_51082516_51082631_51082872_51082998_51083931_51084053_51084289_51084467_51085070_51085230_51087490_51087551_51088043_51088175_51089378_51089457_51090433_51090593_51091006_51091176_51091584_51091772_51091965_51092057_51093046
ENSMUSG00000006281.9_10	chr14	-	8086	55	FSM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	78	7	78	0	multi-exon	FALSE	canonical	2	4	junction_54	10.7386492216491	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGAGTGTATGCCCGAT	NA	False	NA	-11	True	TATAAA	-17	NA	51107939	51061522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328_51067406_51067586_51067720_51069188_51069297_51070910_51071025_51071370_51071535_51073448_51073662_51073766_51073921_51074141_51074355_51074494_51074651_51074836_51074937_51075040_51075166_51075980_51076099_51076402_51076644_51078038_51078154_51078425_51078515_51078666_51078801_51079013_51079165_51079321_51079455_51080633_51080727_51081162_51081343_51081479_51081637_51081711_51081888_51081990_51082186_51082308_51082427_51082516_51082631_51082872_51082998_51083931_51084053_51084289_51084467_51085070_51085230_51087490_51087551_51088043_51088175_51089378_51089457_51090433_51090593_51091006_51091176_51091584_51091772_51091965_51092057_51093046_51093157_51098034_51098193_51098380_51098506_51099939_51100018_51100310_51100473_51100958_51101121_51103406_51103542_51104145_51104326_51105451_51106043_51107869
ENSMUSG00000006281.9_14	chr14	-	3330	8	NIC	ENSMUSG00000006281.9	novel	8171	55	NA	NA	5	-3	intron_retention	FALSE	canonical	3	29	junction_5	7.85064666516234	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATCTAGAGTGTATGCCC	NA	False	NA	-14	True	TATAAA	-14	NA	51067523	51061525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51066487_51066624_51066762_51067119_51067250_51067328
ENSMUSG00000006281.9_15	chr14	-	1553	9	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	40500	9	11	-2	intron_retention	FALSE	canonical	3	29	junction_7	7.91260860904923	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTAGAGTGTATGCCCG	NA	False	NA	-13	True	TATAAA	-15	NA	51067517	51061524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119
ENSMUSG00000006281.9_19	chr14	-	7000	51	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	7011	3	7011	-3	3prime_fragment	FALSE	canonical	2	5	junction_47	10.5865764059964	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGTATGCCCGATTGTG	4414	False	NA	-7	True	TATAAA	-21	NA	51101006	51061518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328_51067406_51067586_51067720_51069188_51069297_51070910_51071025_51071370_51071535_51073448_51073662_51073766_51073921_51074141_51074355_51074494_51074651_51074836_51074937_51075040_51075166_51075980_51076099_51076402_51076644_51078038_51078154_51078425_51078515_51078666_51078801_51079013_51079165_51079321_51079455_51080633_51080727_51081162_51081343_51081479_51081637_51081711_51081888_51081990_51082186_51082308_51082427_51082516_51082631_51082872_51082998_51083931_51084053_51084289_51084467_51085070_51085230_51087490_51087551_51088043_51088175_51089378_51089457_51090433_51090593_51091006_51091176_51091584_51091772_51091965_51092057_51093046_51093157_51098034_51098193_51098380_51098506_51099939_51100018_51100310_51100473_51100958
ENSMUSG00000006281.9_30	chr14	-	3450	25	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	29306	9	-4852	-2	3prime_fragment	FALSE	canonical	2	12	junction_20	10.9924216318941	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTAGAGTGTATGCCCG	NA	False	NA	-13	True	TATAAA	-15	NA	51078711	51061524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328_51067406_51067586_51067720_51069188_51069297_51070910_51071025_51071370_51071535_51073448_51073662_51073766_51073921_51074141_51074355_51074494_51074651_51074836_51074937_51075040_51075166_51075980_51076099_51076402_51076644_51078038_51078154_51078425_51078515_51078666
ENSMUSG00000006281.9_4	chr14	-	2199	16	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	34152	3	-6	-3	3prime_fragment	FALSE	canonical	3	15	junction_14	10.6612486239756	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGTATGCCCGATTGTG	NA	False	NA	-7	True	TATAAA	-21	NA	51073865	51061518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328_51067406_51067586_51067720_51069188_51069297_51070910_51071025_51071370_51071535_51073448_51073662_51073766
ENSMUSG00000006281.9_6	chr14	-	1481	10	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	40494	8	5	-1	3prime_fragment	FALSE	canonical	3	29	junction_7	7.57187779440036	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTAGAGTGTATGCCCGA	NA	False	NA	-12	True	TATAAA	-16	NA	51067523	51061523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328
ENSMUSG00000006288.9_1	chr14	-	1820	10	FSM	ENSMUSG00000006288.9	ENSMUST00000006451.8	1842	10	11	11	-9	-11	multi-exon	FALSE	canonical	3	788	junction_6	38.5313724991294	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATTTACCCTATAGT	NA	False	NA	-17	True	ATTAAA	-10	NA	51022965	51002882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718_51014870_51015213_51015426_51018931_51019065_51022894
ENSMUSG00000006288.9_37	chr14	-	2371	4	FSM	ENSMUSG00000006288.9	ENSMUST00000226768.2	2366	4	-13	8	-9	-8	multi-exon	FALSE	canonical	3	834	junction_3	1.69967317119759	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACAGACTTCCGAGAGCT	NA	False	NA	-9	True	AATAAA	-10	NA	51022965	51012914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_51014870_51015213_51015426_51018931_51019065_51022894
ENSMUSG00000006289.15_0	chr14	-	1253	11	FSM	ENSMUSG00000006289.15	ENSMUST00000159292.8	3388	11	43	2092	-7	0	multi-exon	TRUE	canonical	3	62	junction_9	170.895289578151	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTAGGTTGTGTTTTTC	NA	False	NA	-5	True	AATAAA	-20	NA	51162307	51153142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154910_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
ENSMUSG00000006299.14_0	chr1	-	1761	11	FSM	ENSMUSG00000006299.14	ENSMUST00000006462.14	1817	11	49	7	-9	-1	multi-exon	FALSE	canonical	3	1233	junction_8	50.6802722960325	1391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGCAGTGTCTGTGTGCA	NA	False	NA	-6	True	AATAAA	-12	NA	74323848	74319005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
ENSMUSG00000006299.14_2	chr1	-	1764	11	FSM	ENSMUSG00000006299.14	ENSMUST00000178235.8	1756	11	-9	1	-9	-1	multi-exon	FALSE	canonical	3	93	junction_10	361.877106211487	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGCAGTGTCTGTGTGCA	NA	False	NA	-6	True	AATAAA	-12	NA	74323848	74319005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323204_74323661
ENSMUSG00000006301.18_0	chr1	-	2122	12	FSM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	249	7	-36	-1	multi-exon	FALSE	canonical	0	0	junction_11	38.8406364690682	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGACCCTTGAGTTGCT	NA	False	NA	-13	True	AATAAA	-15	NA	74343315	74327412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74343281
ENSMUSG00000006301.18_2	chr1	-	2197	12	NIC	ENSMUSG00000006301.18	novel	2378	12	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_11	37.2398968494191	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACCCTTGAGTTGCTGTG	NA	False	NA	-10	True	AATAAA	-18	NA	74344777	74327409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74344671
ENSMUSG00000006301.18_6	chr1	-	2094	11	FSM	ENSMUSG00000006301.18	ENSMUST00000113796.8	11011	11	8918	-1	252	-1	multi-exon	FALSE	canonical	3	102	junction_1	14.8579944810866	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGACCCTTGAGTTGCTGT	3231	False	NA	-11	True	AATAAA	-17	NA	74334602	74327410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356
ENSMUSG00000006301.18_8	chr1	-	975	1	ISM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	15177	7	2000	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGACCCTTGAGTTGCT	9446	False	NA	-13	True	AATAAA	-15	NA	74328387	74327412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_74327400_74328400
ENSMUSG00000006301.18_9	chr1	-	2406	12	NIC	ENSMUSG00000006301.18	novel	2378	12	NA	NA	28	-1	combination_of_known_junctions	FALSE	canonical	2	3	junction_11	38.0389100486062	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGACCCTTGAGTTGCT	NA	False	NA	-13	True	AATAAA	-15	NA	74343251	74327412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74342933
ENSMUSG00000006304.15_1	chr1	+	1401	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113820.9	1439	11	37	1	-16	-1	multi-exon	TRUE	canonical	3	1389	junction_1	306.215936881149	954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAGAATTTGTTGATTT	7865	False	NA	13	True	AATAAA	-18	NA	74275692	74307367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUSG00000006304.15_2	chr1	+	1582	10	FSM	ENSMUSG00000006304.15	ENSMUST00000006467.14	1404	10	43	-221	10	-1	multi-exon	FALSE	canonical	3	1867	junction_3	197.32307280632	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAGAATTTGTTGATTT	7891	False	NA	13	True	AATAAA	-18	NA	74275718	74307367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUSG00000006307.17_10	chr7	-	8480	37	FSM	ENSMUSG00000006307.17	ENSMUST00000006470.14	8469	37	-12	1	-3	-1	multi-exon	FALSE	canonical	3	32	junction_36	36.953257094288	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTGGTCTTTCCGTGCC	NA	False	NA	-24	True	AATAAA	-17	NA	30288154	30268283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125_30270264_30273384_30273492_30273572_30273663_30273749_30275050_30275277_30275503_30276042_30276204_30276298_30276378_30276455_30276577_30276721_30276881_30277907_30278046_30278127_30278220_30278304_30278421_30278931_30279006_30279145_30279251_30279350_30279441_30279514_30279700_30279863_30279978_30280439_30280558_30281074_30281171_30281262_30281410_30281592_30281707_30281832_30281932_30282212_30282308_30282608_30282888_30283124_30283181_30283341_30283622_30283873_30284025_30284117_30284232_30284418_30286455_30286679_30286753_30287779
ENSMUSG00000006307.17_26	chr7	-	2868	11	ISM	ENSMUSG00000006307.17	ENSMUST00000006470.14	8469	37	12785	1	1232	-1	3prime_fragment	FALSE	canonical	3	99	junction_10	28.5313862263999	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTGGTCTTTCCGTGCC	5022	False	NA	-24	True	AATAAA	-17	NA	30275357	30268283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125_30270264_30273384_30273492_30273572_30273663_30273749_30275050_30275277
ENSMUSG00000006307.17_3	chr7	-	2111	10	ISM	ENSMUSG00000006307.17	ENSMUST00000006470.14	8469	37	13770	1	-773	-1	3prime_fragment	FALSE	canonical	3	102	junction_6	26.8429359399553	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTGGTCTTTCCGTGCC	6007	False	NA	-24	True	AATAAA	-17	NA	30274372	30268283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125_30270264_30273384_30273492_30273572_30273663_30273749
ENSMUSG00000006307.17_30	chr7	-	4108	21	ISM	ENSMUSG00000006307.17	ENSMUST00000006470.14	8469	37	8742	1	-981	-1	3prime_fragment	FALSE	canonical	3	74	junction_12	32.5718820457154	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTGGTCTTTCCGTGCC	979	False	NA	-24	True	AATAAA	-17	NA	30279400	30268283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125_30270264_30273384_30273492_30273572_30273663_30273749_30275050_30275277_30275503_30276042_30276204_30276298_30276378_30276455_30276577_30276721_30276881_30277907_30278046_30278127_30278220_30278304_30278421_30278931_30279006_30279145_30279251_30279350
ENSMUSG00000006307.17_41	chr7	-	1285	7	ISM	ENSMUSG00000006307.17	ENSMUST00000131002.2	6345	35	14508	-1	-168	-1	3prime_fragment	FALSE	canonical	3	102	junction_6	31.244999599936	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTGGTCTTTCCGTGCC	NA	False	NA	-24	True	AATAAA	-17	NA	30270257	30268283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125
ENSMUSG00000006307.17_43	chr7	-	6900	35	ISM	ENSMUSG00000006307.17	ENSMUST00000006470.14	8469	37	2820	1	-557	-1	3prime_fragment	FALSE	canonical	3	47	junction_34	35.509209780545	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTGGTCTTTCCGTGCC	NA	False	NA	-24	True	AATAAA	-17	NA	30285322	30268283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125_30270264_30273384_30273492_30273572_30273663_30273749_30275050_30275277_30275503_30276042_30276204_30276298_30276378_30276455_30276577_30276721_30276881_30277907_30278046_30278127_30278220_30278304_30278421_30278931_30279006_30279145_30279251_30279350_30279441_30279514_30279700_30279863_30279978_30280439_30280558_30281074_30281171_30281262_30281410_30281592_30281707_30281832_30281932_30282212_30282308_30282608_30282888_30283124_30283181_30283341_30283622_30283873_30284025_30284117_30284232_30284418
ENSMUSG00000006307.17_5	chr7	-	5266	30	ISM	ENSMUSG00000006307.17	ENSMUST00000006470.14	8469	37	5384	1	1741	-1	3prime_fragment	FALSE	canonical	3	55	junction_24	34.2649673936444	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTGGTCTTTCCGTGCC	NA	False	NA	-24	True	AATAAA	-17	NA	30282758	30268283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125_30270264_30273384_30273492_30273572_30273663_30273749_30275050_30275277_30275503_30276042_30276204_30276298_30276378_30276455_30276577_30276721_30276881_30277907_30278046_30278127_30278220_30278304_30278421_30278931_30279006_30279145_30279251_30279350_30279441_30279514_30279700_30279863_30279978_30280439_30280558_30281074_30281171_30281262_30281410_30281592_30281707_30281832_30281932_30282212_30282308_30282608
ENSMUSG00000006307.17_51	chr7	-	4719	26	ISM	ENSMUSG00000006307.17	ENSMUST00000006470.14	8469	37	6822	1	-2901	-1	3prime_fragment	FALSE	canonical	3	55	junction_24	34.2701269329426	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTGGTCTTTCCGTGCC	NA	False	NA	-24	True	AATAAA	-17	NA	30281320	30268283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125_30270264_30273384_30273492_30273572_30273663_30273749_30275050_30275277_30275503_30276042_30276204_30276298_30276378_30276455_30276577_30276721_30276881_30277907_30278046_30278127_30278220_30278304_30278421_30278931_30279006_30279145_30279251_30279350_30279441_30279514_30279700_30279863_30279978_30280439_30280558_30281074_30281171_30281262
ENSMUSG00000006310.11_0	chr7	-	894	4	ISM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	2122	-108	2122	108	3prime_fragment	FALSE	canonical	3	80	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGGGCTTCGTATAATTC	NA	False	NA	NA	False	AATAAA	-23	NA	30290245	30288997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220
ENSMUSG00000006310.11_1	chr7	-	1847	6	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-14	-1	combination_of_known_splicesites	FALSE	canonical	3	35	junction_4	21.6277599394852	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACGAGTCCAGACTTTTC	NA	False	NA	-1	True	AATAAA	-19	NA	30298308	30289106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30298204
ENSMUSG00000006310.11_10	chr7	-	2043	5	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	17	-1	intron_retention	FALSE	canonical	3	42	junction_4	17.5267652463311	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACGAGTCCAGACTTTTC	NA	False	NA	-1	True	AATAAA	-19	NA	30298317	30289106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30291391_30298204
ENSMUSG00000006310.11_12	chr7	-	1769	6	FSM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	1	5	1	-3	multi-exon	FALSE	canonical	2	6	junction_5	31.6771210813104	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAGGACGAGTCCAGACT	NA	False	NA	-5	True	AATAAA	-15	NA	30292366	30289110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30292336
ENSMUSG00000006310.11_13	chr7	-	1396	5	ISM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	1324	1	1324	-1	3prime_fragment	FALSE	canonical	3	35	junction_4	20.5487225880345	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACGAGTCCAGACTTTTC	NA	False	NA	-1	True	AATAAA	-19	NA	30291043	30289106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481
ENSMUSG00000006310.11_16	chr7	-	2610	3	ISM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	391	1	391	-1	intron_retention	FALSE	canonical	3	83	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACGAGTCCAGACTTTTC	NA	False	NA	-1	True	AATAAA	-19	NA	30291976	30289106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30289633_30289780_30289946_30290057
ENSMUSG00000006310.11_17	chr7	-	2374	2	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	1	0	intron_retention	FALSE	canonical	3	42	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298293	30289105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30291391_30298204
ENSMUSG00000006310.11_4	chr7	-	957	5	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	3	-3	combination_of_known_junctions	FALSE	canonical	3	18	junction_4	27.8960122598195	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAGGACGAGTCCAGACT	NA	False	NA	-5	True	AATAAA	-15	NA	30298331	30289110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30298204
ENSMUSG00000006310.11_6	chr7	-	3902	2	ISM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	-793	5	-793	-3	intron_retention	FALSE	canonical	3	83	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAGGACGAGTCCAGACT	NA	False	NA	-5	True	AATAAA	-15	NA	30293160	30289110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30289633_30289780
ENSMUSG00000006311.9_0	chr7	-	487	3	ISM	ENSMUSG00000006311.9	ENSMUST00000108147.3	1048	6	1092	-7	1092	7	3prime_fragment	FALSE	canonical	3	44	junction_1	1	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCTGCGTGTCTGGTGTC	NA	False	NA	NA	False	AATAAA	-25	NA	30334185	30333033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30333260_30333413_30333527_30334037
ENSMUSG00000006313.6_0	chr7	-	909	4	ISM	ENSMUSG00000006313.6	ENSMUST00000006476.6	1421	8	5886	-7	5886	7	3prime_fragment	FALSE	canonical	3	18	junction_3	10.6144555520604	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGAGCTTGTTCTGTTCT	7793	False	NA	-1	True	AATAAA	-17	NA	30306386	30302509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299
ENSMUSG00000006313.6_1	chr7	-	711	3	ISM	ENSMUSG00000006313.6	ENSMUST00000006476.6	1421	8	7718	-7	7718	7	3prime_fragment	FALSE	canonical	3	31	junction_1	6.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGAGCTTGTTCTGTTCT	9625	False	NA	-1	True	AATAAA	-17	NA	30304554	30302509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30303068_30303196_30303281_30304485
ENSMUSG00000006315.10_0	chr7	-	825	7	FSM	ENSMUSG00000006315.10	ENSMUST00000006478.10	870	7	46	-1	13	-1	multi-exon	FALSE	canonical	3	739	junction_6	21.1850314032233	265	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTGTTATGTCCATCTC	9303	False	NA	-15	True	AGTAAA	-15	NA	30428919	30427128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
ENSMUSG00000006333.15_1	chr7	+	702	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	48	1	0	1	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	3119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1312	False	NA	2	True	AATAAA	-17	NA	3707039	3709895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
ENSMUSG00000006333.15_29	chr7	+	680	4	FSM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	273	-39	0	1	multi-exon	FALSE	canonical	3	14286	junction_1	337.374503416538	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1596	False	NA	2	True	AATAAA	-17	NA	3707323	3709895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709649
ENSMUSG00000006335.17_0	chr7	-	1115	6	FSM	ENSMUSG00000006335.17	ENSMUST00000108641.10	1166	6	47	4	2	-4	multi-exon	FALSE	canonical	3	150	junction_1	47.3142684610044	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACACTTGTCTAGGTCAC	NA	False	NA	-5	True	AATAAA	-12	NA	3632881	3623326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUSG00000006335.17_13	chr7	-	636	5	ISM	ENSMUSG00000006335.17	ENSMUST00000108641.10	1166	6	993	2	150	-2	3prime_fragment	FALSE	canonical	3	150	junction_1	49.4943178556893	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACTTGTCTAGGTCACCG	NA	False	NA	-3	True	AATAAA	-14	NA	3631935	3623324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826
ENSMUSG00000006335.17_4	chr7	-	1086	6	FSM	ENSMUSG00000006335.17	ENSMUST00000155592.8	1091	6	2	3	2	-3	multi-exon	FALSE	canonical	3	96	junction_1	68.2800117164606	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACACTTGTCTAGGTCACC	NA	False	NA	-4	True	AATAAA	-13	NA	3632881	3623325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_3623474_3623775_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUSG00000006335.17_7	chr7	-	1389	5	NIC	ENSMUSG00000006335.17	novel	1166	6	NA	NA	3	-1	intron_retention	FALSE	canonical	3	237	junction_3	15.2704780540755	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTGTCTAGGTCACCGT	NA	False	NA	-2	True	AATAAA	-15	NA	3632880	3623323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUSG00000006342.16_13	chr10	-	2806	13	FSM	ENSMUSG00000006342.16	ENSMUST00000077610.6	2275	13	-34	-497	-6	-6	multi-exon	FALSE	canonical	1	3	junction_12	20.894410470001	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATCTTTCCTGGTTCCCGT	NA	False	NA	-9	True	NA	NA	NA	75479848	75472547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75479707
ENSMUSG00000006342.16_2	chr10	-	3141	15	FSM	ENSMUSG00000006342.16	ENSMUST00000095541.11	3151	15	7	3	-4	-1	multi-exon	FALSE	canonical	3	52	junction_6	11.246768243294	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTGGTTCCCGTCTGTT	NA	False	NA	-4	True	NA	NA	NA	75479818	75472542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
ENSMUSG00000006342.16_4	chr10	-	1437	5	ISM	ENSMUSG00000006342.16	ENSMUST00000095541.11	3151	15	5428	1	5417	0	3prime_fragment	FALSE	canonical	3	56	junction_4	13.4721935853075	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTCCCGTCTGTTTG	NA	False	NA	-2	True	NA	NA	NA	75474397	75472540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180
ENSMUSG00000006342.16_9	chr10	-	2427	11	ISM	ENSMUSG00000006342.16	ENSMUST00000095541.11	3151	15	3117	3	3106	-1	3prime_fragment	FALSE	canonical	3	52	junction_6	12.4919974383603	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTGGTTCCCGTCTGTT	NA	False	NA	-4	True	NA	NA	NA	75476708	75472542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608
ENSMUSG00000006345.11_10	chr10	+	2247	15	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-39	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	105.112985857687	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCATGGACTTTAGTGTC	NA	False	NA	26	True	NA	NA	NA	75399942	75422024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410065_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ENSMUSG00000006345.11_11	chr10	+	2820	14	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-48	-2	intron_retention	FALSE	canonical	0	0	junction_1	94.4407393789241	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATCATGGACTTTAGTGT	NA	False	NA	25	True	NA	NA	NA	75399933	75422023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ENSMUSG00000006345.11_3	chr10	+	2253	15	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-42	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	94.4297600962574	178	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCATGGACTTTAGTGTC	NA	False	NA	26	True	NA	NA	NA	75399939	75422024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ENSMUSG00000006345.11_50	chr10	+	2125	14	NIC	ENSMUSG00000006345.11	novel	2140	14	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	89.9111987943607	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCATGGACTTTAGTGTC	NA	False	NA	26	True	NA	NA	NA	75404490	75422024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_75404601_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ENSMUSG00000006345.11_7	chr10	+	2242	15	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-48	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	109.844161410238	50	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCATGGACTTTAGTGTC	NA	False	NA	26	True	NA	NA	NA	75399933	75422024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_75400093_75400671_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ENSMUSG00000006356.11_1	chr12	+	1152	7	FSM	ENSMUSG00000006356.11	ENSMUST00000084882.9	1439	7	284	3	-52	-3	multi-exon	FALSE	canonical	3	743	junction_5	14.1745076340121	417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACCCAGTGTCGTGTGT	5906	False	NA	27	True	AATAAA	-20	NA	113104139	113109123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_113104235_113107078_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
ENSMUSG00000006360.12_0	chr12	+	450	6	NNC	ENSMUSG00000006360.12	novel	445	5	NA	NA	-190	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	164.865278333553	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCTGTGTTTTTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	113115441	113117497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_113115517_113115701_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
ENSMUSG00000006360.12_2	chr12	+	404	5	FSM	ENSMUSG00000006360.12	ENSMUST00000006523.12	445	5	41	0	0	0	multi-exon	FALSE	canonical	3	402	junction_4	13.838352503098	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCTGTGTTTTTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	113115672	113117497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
ENSMUSG00000006362.17_0	chr8	-	3440	11	NIC	ENSMUSG00000006362.17	novel	7645	12	NA	NA	47	242	combination_of_known_junctions	TRUE	canonical	0	0	junction_4	0.916515138991168	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAGAAAAAAAGGAAAAAGA	6828	False	NA	NA	False	NA	NA	NA	123425801	123355959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_123357716_123360056_123360248_123361098_123361168_123361687_123361887_123362492_123362579_123364732_123364963_123365595_123365778_123369702_123369793_123370030_123370273_123377068_123377216_123425553
ENSMUSG00000006362.17_1	chr8	-	1218	2	ISM	ENSMUSG00000006362.17	ENSMUST00000064674.13	2867	12	19	19616	19	474	5prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAGTCTGAGATGAGAAA	NA	False	NA	NA	False	AATAAA	-15	NA	123404895	123376292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123377216_123404600
ENSMUSG00000006369.15_0	chr15	+	2232	15	FSM	ENSMUSG00000006369.15	ENSMUST00000109432.4	2273	15	34	7	34	-7	multi-exon	TRUE	canonical	3	356	junction_14	63.5701845785187	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCATGCCTCTTGTACC	NA	False	NA	28	True	AATAAA	-18	NA	85090239	85136079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85135645
ENSMUSG00000006369.15_2	chr15	+	2721	17	FSM	ENSMUSG00000006369.15	ENSMUST00000057410.14	3659	17	90	848	34	-848	multi-exon	FALSE	canonical	3	136	junction_16	137.738202761616	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTGGATTGCAATTTTG	NA	False	NA	54	True	AATAAA	-44	NA	85090239	85169888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85147459_85147603_85149450_85149583_85169240
ENSMUSG00000006373.11_0	chrX	+	1853	3	FSM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	1	3	1	-3	multi-exon	FALSE	canonical	3	454	junction_1	42	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATAGTGAGGCTTTCAT	1669	False	NA	NA	False	AATAAA	-12	NA	35861859	35869729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_35862268_35865773_35865930_35868440
ENSMUSG00000006373.11_7	chrX	+	1042	1	ISM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	6830	2	6830	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAGTGAGGCTTTCATT	8498	False	NA	NA	False	AATAAA	-13	NA	35868688	35869730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_35868700_35869700
ENSMUSG00000006378.16_0	chr15	+	1454	9	FSM	ENSMUSG00000006378.16	ENSMUST00000006544.9	2370	9	23	893	23	-893	multi-exon	FALSE	canonical	3	1189	junction_6	75.224663508719	1037	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACTTCAGTCTGCTTTAT	655	False	NA	12	True	NA	NA	NA	78915096	78921660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
ENSMUSG00000006386.16_0	chr4	+	4660	23	FSM	ENSMUSG00000006386.16	ENSMUST00000102798.8	4654	23	-9	3	2	-3	multi-exon	FALSE	canonical	1	2	junction_15	3.20027116619671	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCTTCCCAGGATTGTG	272	False	NA	NA	False	AATAAA	-15	NA	94627527	94763173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_94627930_94669052_94669365_94686847_94686959_94687363_94687517_94692521_94692654_94693049_94693191_94699524_94699654_94708320_94708473_94715492_94715638_94715906_94716063_94718120_94718256_94725353_94725642_94737857_94738158_94739959_94740115_94741605_94741817_94743558_94743670_94747124_94747316_94747807_94747922_94751849_94751921_94752841_94752883_94753659_94753757_94761278_94761379_94762160
ENSMUSG00000006386.16_1	chr4	+	4664	23	FSM	ENSMUSG00000006386.16	ENSMUST00000071168.6	4176	23	-234	-254	-5	-3	multi-exon	TRUE	canonical	1	2	junction_15	3.26672429251472	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCTTCCCAGGATTGTG	265	False	NA	NA	False	AATAAA	-15	NA	94627520	94763173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_94627930_94669052_94669365_94686847_94686959_94687363_94687517_94692521_94692654_94693049_94693191_94699524_94699654_94708320_94708473_94715492_94715638_94715906_94716063_94718120_94718256_94725353_94725642_94737857_94738158_94739959_94740112_94741605_94741817_94743558_94743670_94747124_94747316_94747807_94747922_94751849_94751921_94752841_94752883_94753659_94753757_94761278_94761379_94762160
ENSMUSG00000006390.16_2	chr4	+	1445	8	FSM	ENSMUSG00000006390.16	ENSMUST00000006557.13	1811	8	24	342	-2	-2	multi-exon	FALSE	canonical	3	108	junction_5	11.9505785019225	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGAGATTGTGTGTGTG	NA	False	NA	-1	True	ATTAAA	-12	NA	118285313	118289808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_118285413_118287692_118287753_118287911_118288103_118288259_118288341_118288462_118288520_118288605_118288712_118288793_118288931_118289094
ENSMUSG00000006390.16_3	chr4	+	1966	8	FSM	ENSMUSG00000006390.16	ENSMUST00000067896.4	1137	8	-488	-341	-488	0	multi-exon	FALSE	canonical	2	5	junction_1	41.2162044614018	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGATTGTGTGTGTGTG	NA	False	NA	1	True	ATTAAA	-14	NA	118286409	118289810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_118287028_118287692_118287753_118287911_118288103_118288259_118288341_118288462_118288520_118288605_118288712_118288793_118288931_118289094
ENSMUSG00000006392.17_0	chr4	+	1141	7	FSM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	2	2	2	0	multi-exon	FALSE	canonical	3	450	junction_1	88.2754527349226	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTGCCATTCCTTGTCC	NA	False	NA	30	True	NA	NA	NA	118266564	118272306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUSG00000006392.17_1	chr4	+	1116	7	FSM	ENSMUSG00000006392.17	ENSMUST00000084319.11	1134	7	16	2	-2	0	multi-exon	FALSE	canonical	3	157	junction_2	198.998673920763	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTGCCATTCCTTGTCC	NA	False	NA	30	True	NA	NA	NA	118266549	118272306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_118266584_118268081_118268201_118268894_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUSG00000006392.17_16	chr4	+	1128	6	ISM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	1513	2	531	0	3prime_fragment	FALSE	canonical	3	642	junction_1	31.4388294947506	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTGCCATTCCTTGTCC	NA	False	NA	30	True	NA	NA	NA	118268075	118272306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUSG00000006392.17_8	chr4	+	1191	7	NIC	ENSMUSG00000006392.17	novel	1145	7	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_3	232.491337950949	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTGCCATTCCTTGTCC	NA	False	NA	30	True	NA	NA	NA	118266564	118272306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_118266584_118268081_118268201_118268854_118269050_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUSG00000006395.17_0	chr4	+	1690	1	FSM	ENSMUSG00000006395.17	ENSMUST00000179719.2	1296	1	-401	7	-392	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATCAAAAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-5	NA	118216794	118218484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_118216800_118218500
ENSMUSG00000006395.17_1	chr4	+	916	8	FSM	ENSMUSG00000006395.17	ENSMUST00000194248.2	936	8	19	1	-5	-1	multi-exon	FALSE	canonical	3	16	junction_1	6.43333157097011	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATATGTGTATATTACA	NA	False	NA	NA	False	ATTAAA	-15	NA	118217205	118219940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_118217429_118217502_118217587_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
ENSMUSG00000006395.17_3	chr4	+	1919	6	ISM	ENSMUSG00000006395.17	ENSMUST00000106393.8	843	7	308	0	293	0	3prime_fragment	FALSE	canonical	3	22	junction_2	5.77581163127746	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	False	NA	NA	False	ATTAAA	-16	NA	118217503	118219941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
ENSMUSG00000006395.17_4	chr4	+	987	7	NIC	ENSMUSG00000006395.17	novel	936	8	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	22	junction_3	5.56776436283002	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCATATGTGTATATTAC	NA	False	NA	NA	False	ATTAAA	-14	NA	118217207	118219939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_118217587_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
ENSMUSG00000006398.16_1	chr4	-	1733	10	FSM	ENSMUSG00000006398.16	ENSMUST00000006565.13	1793	10	59	1	59	-1	multi-exon	TRUE	canonical	3	1043	junction_4	200.755117703013	1777	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCCCAGCATCCTTCCTA	NA	False	NA	-12	True	AATAAA	-16	NA	118294490	118290098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_118290339_118290677_118290796_118291947_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
ENSMUSG00000006403.14_0	chr1	+	2752	8	FSM	ENSMUSG00000006403.14	ENSMUST00000111314.2	3761	8	291	718	291	-717	multi-exon	FALSE	canonical	2	2	junction_1	2.0995626366713	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACTCAGTAGGTGCTCAA	NA	False	NA	NA	False	NA	NA	NA	171079975	171087488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171080430_171080655_171080789_171081461_171081633_171083716_171084004_171084096_171084284_171084523_171084700_171085287_171085464_171086320
ENSMUSG00000006403.14_2	chr1	+	3671	9	FSM	ENSMUSG00000006403.14	ENSMUST00000219033.2	4386	9	1	714	1	-714	multi-exon	FALSE	canonical	1	1	junction_1	2.3418742493994	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGTAGGTGCTCAAGGA	NA	False	NA	NA	False	NA	NA	NA	171077992	171087491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171079039_171080105_171080430_171080655_171080789_171081461_171081633_171083716_171084004_171084096_171084284_171084523_171084700_171085287_171085464_171086320
ENSMUSG00000006411.13_2	chr1	+	2231	5	ISM	ENSMUSG00000006411.13	ENSMUST00000111286.9	3201	10	14505	10	14249	-8	3prime_fragment	FALSE	canonical	1	1	junction_3	2.29128784747792	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACCTTTTTTTGTCTG	NA	False	NA	NA	False	AATAAA	-4	NA	171212171	171215845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_171212401_171212665_171212820_171213230_171213307_171213727_171213803_171214148
ENSMUSG00000006412.11_0	chr1	+	614	4	FSM	ENSMUSG00000006412.11	ENSMUST00000135941.8	1735	4	30	1091	-30	193	multi-exon	FALSE	canonical	3	1860	junction_3	112.860779527503	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTTAGCTATAGCCTGAA	NA	False	NA	22	True	NA	NA	NA	171173267	171185731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185417
ENSMUSG00000006412.11_2	chr1	+	1633	3	ISM	ENSMUSG00000006412.11	ENSMUST00000006579.5	885	4	-30	241	-30	191	intron_retention	FALSE	canonical	3	1973	junction_1	81	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTTAGCTATAGCCTG	NA	False	NA	20	True	NA	NA	NA	171173267	171185729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_171173355_171184097_171184187_171184272
ENSMUSG00000006418.18_0	chr2	+	2138	6	FSM	ENSMUSG00000006418.18	ENSMUST00000078050.7	2502	6	355	9	-2	0	multi-exon	FALSE	canonical	3	578	junction_2	31.1088411870323	858	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGTAAGCTGCAATGTT	NA	False	NA	15	True	AATAAA	-16	NA	167345363	167358084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585
ENSMUSG00000006423.16_5	chrX	-	3269	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	60	11	-13	-4	multi-exon	FALSE	canonical	3	146	junction_1	34.0999348321306	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAACTAAACTAGCTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	36127839	36112206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
ENSMUSG00000006423.16_7	chrX	-	1656	1	ISM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	14041	7	6807	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAACTAGCTTGTTTTG	NA	False	NA	NA	False	AATAAA	-21	NA	36113858	36112202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_36112200_36113900
ENSMUSG00000006423.16_9	chrX	-	3123	6	NIC	ENSMUSG00000006423.16	novel	3340	7	NA	NA	-6	-4	combination_of_known_splicesites	FALSE	canonical	2	2	junction_3	92.4675078067966	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAACTAAACTAGCTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	36127832	36112206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_36114816_36116291_36116385_36116982_36117073_36120504_36120547_36127276_36127395_36127661
ENSMUSG00000006435.17_0	chr19	+	4000	6	FSM	ENSMUSG00000006435.17	ENSMUST00000111808.11	4158	6	148	10	-54	-4	multi-exon	FALSE	canonical	3	49	junction_1	24.9206741481847	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCCTGAGGGCTGTGCT	NA	False	NA	30	True	AATAAA	-12	NA	47167406	47247870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_47167991_47228240_47228483_47228788_47229111_47241557_47242248_47245150_47245298_47245855
ENSMUSG00000006435.17_1	chr19	+	2351	3	FSM	ENSMUSG00000006435.17	ENSMUST00000235326.2	4034	3	-65	1748	-65	467	multi-exon	FALSE	canonical	3	49	junction_1	0.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATATTGAGAGCCCAAACG	NA	False	NA	NA	False	NA	NA	NA	47167395	47230302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_47167991_47228240_47228483_47228788
ENSMUSG00000006435.17_11	chr19	+	2531	3	ISM	ENSMUSG00000006435.17	ENSMUST00000111807.5	3606	6	24529	4	24529	-4	3prime_fragment	FALSE	canonical	3	77	junction_1	18.5	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCCTGAGGGCTGTGCT	1542	False	NA	30	True	AATAAA	-12	NA	47241878	47247870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_47242248_47245150_47245298_47245855
ENSMUSG00000006435.17_12	chr19	+	5381	2	NIC	ENSMUSG00000006435.17	novel	4158	6	NA	NA	24583	-3	intron_retention	FALSE	canonical	3	114	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCCTGAGGGCTGTGCTG	1596	False	NA	31	True	AATAAA	-13	NA	47241932	47247871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_47245298_47245855
ENSMUSG00000006435.17_15	chr19	+	1592	1	ISM	ENSMUSG00000006435.17	ENSMUST00000111808.11	4158	6	79023	7	28932	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGAGGGCTGTGCTGTG	5945	False	NA	33	True	AATAAA	-15	NA	47246281	47247873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_47246300_47247900
ENSMUSG00000006435.17_2	chr19	+	1746	4	FSM	ENSMUSG00000006435.17	ENSMUST00000235290.2	1060	4	-219	-467	-90	467	multi-exon	FALSE	canonical	3	8	junction_3	19.5675468285856	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATATTGAGAGCCCAAACG	NA	False	NA	NA	False	NA	NA	NA	47167370	47230302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_47167991_47228240_47228483_47228788_47229111_47229740
ENSMUSG00000006435.17_8	chr19	+	3189	4	ISM	ENSMUSG00000006435.17	ENSMUST00000111807.5	3606	6	11424	4	11424	-4	3prime_fragment	FALSE	canonical	3	53	junction_1	25.0909456887451	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCCTGAGGGCTGTGCT	NA	False	NA	30	True	AATAAA	-12	NA	47228773	47247870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_47229111_47241557_47242248_47245150_47245298_47245855
ENSMUSG00000006442.11_0	chr4	+	1303	7	FSM	ENSMUSG00000006442.11	ENSMUST00000006611.9	1338	7	14	21	14	-21	multi-exon	FALSE	canonical	3	3072	junction_6	112.657297440808	2340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTCAGTCATGACCTCTG	8730	False	NA	7	True	AATACA	-15	NA	148675973	148679055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148676244_148676500_148676622_148676938_148677032_148677744_148677899_148678224_148678455_148678539_148678663_148678743
ENSMUSG00000006442.11_1	chr4	+	1385	6	ISM	ENSMUSG00000006442.11	ENSMUST00000006611.9	1338	7	11	23	11	-23	intron_retention	FALSE	canonical	3	3092	junction_5	102.267101259398	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGCTCAGTCATGACCTC	8727	False	NA	5	True	AATACA	-13	NA	148675970	148679053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148676244_148676500_148676622_148676938_148677032_148677744_148677899_148678224_148678455_148678539
ENSMUSG00000006445.4_12	chr4	+	3196	15	ISM	ENSMUSG00000006445.4	ENSMUST00000006614.3	3913	17	7612	7	-42	-7	3prime_fragment	FALSE	canonical	3	98	junction_5	18.2303850418885	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATTTTGGCTTTCAT	NA	False	NA	1	True	AATAAA	-15	NA	141036162	141056688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
ENSMUSG00000006445.4_16	chr4	+	2774	13	ISM	ENSMUSG00000006445.4	ENSMUST00000006614.3	3913	17	15668	7	-5	-7	3prime_fragment	FALSE	canonical	3	98	junction_3	16.1458198924675	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATTTTGGCTTTCAT	NA	False	NA	1	True	AATAAA	-15	NA	141044218	141056688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
ENSMUSG00000006445.4_5	chr4	+	3906	17	FSM	ENSMUSG00000006445.4	ENSMUST00000006614.3	3913	17	0	7	0	-7	multi-exon	FALSE	canonical	3	98	junction_7	17.9965274428152	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATTTTGGCTTTCAT	NA	False	NA	1	True	AATAAA	-15	NA	141028550	141056688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_141028746_141033824_141033893_141035715_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
ENSMUSG00000006456.11_1	chr19	-	1906	2	ISM	ENSMUSG00000006456.11	ENSMUST00000006625.8	3165	3	8059	356	7937	-3	3prime_fragment	FALSE	canonical	3	363	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTGGTTGTCATTGTCT	NA	False	NA	-3	True	AATAAA	-24	NA	4853603	4850952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4851834_4852578
ENSMUSG00000006456.11_3	chr19	-	2774	3	FSM	ENSMUSG00000006456.11	ENSMUST00000006625.8	3165	3	35	356	-14	-3	multi-exon	FALSE	canonical	3	363	junction_1	19	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTGGTTGTCATTGTCT	7800	False	NA	-3	True	AATAAA	-24	NA	4861627	4850952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4851834_4852578_4854044_4861199
ENSMUSG00000006457.5_0	chr19	-	2630	20	ISM	ENSMUSG00000006457.5	ENSMUST00000006626.5	2887	21	5307	4	5307	3	3prime_fragment	FALSE	canonical	2	7	junction_19	5.41261479249787	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTGTTTTGTTTTTGT	5620	False	NA	0	True	AATAAA	-26	NA	4922630	4911247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4911532_4911612_4911772_4912197_4912264_4912351_4912499_4913162_4913343_4913437_4913573_4913998_4914182_4914452_4914594_4914680_4914790_4915326_4915478_4917568_4917717_4917840_4918072_4918745_4918839_4919385_4919472_4920939_4921022_4921109_4921189_4921624_4921713_4921798_4921886_4922266_4922387_4922569
ENSMUSG00000006457.5_1	chr19	-	2549	18	ISM	ENSMUSG00000006457.5	ENSMUST00000006626.5	2887	21	5949	7	5949	0	3prime_fragment	FALSE	canonical	2	12	junction_7	4.36643377879897	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGTTTTTGTTTTGTTTT	6262	False	NA	-3	True	AATAAA	-23	NA	4921988	4911250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4911532_4911612_4911772_4912197_4912264_4912351_4912499_4913162_4913343_4913437_4913573_4913998_4914182_4914452_4914594_4914680_4914790_4915326_4915478_4917568_4917717_4917840_4918072_4918745_4918839_4919385_4919472_4920939_4921022_4921109_4921189_4921624_4921713_4921798
ENSMUSG00000006457.5_3	chr19	-	2874	21	FSM	ENSMUSG00000006457.5	ENSMUST00000006626.5	2887	21	6	7	6	0	multi-exon	FALSE	canonical	2	4	junction_20	6.25519783859791	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGTTTTTGTTTTGTTTT	319	False	NA	-3	True	AATAAA	-23	NA	4927931	4911250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4911532_4911612_4911772_4912197_4912264_4912351_4912499_4913162_4913343_4913437_4913573_4913998_4914182_4914452_4914594_4914680_4914790_4915326_4915478_4917568_4917717_4917840_4918072_4918745_4918839_4919385_4919472_4920939_4921022_4921109_4921189_4921624_4921713_4921798_4921886_4922266_4922387_4922569_4922685_4927738
ENSMUSG00000006457.5_6	chr19	-	1634	11	ISM	ENSMUSG00000006457.5	ENSMUST00000006626.5	2887	21	10287	7	-4064	0	3prime_fragment	FALSE	canonical	2	12	junction_7	4.2142615011411	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGTTTTTGTTTTGTTTT	9669	False	NA	-3	True	AATAAA	-23	NA	4917650	4911250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4911532_4911612_4911772_4912197_4912264_4912351_4912499_4913162_4913343_4913437_4913573_4913998_4914182_4914452_4914594_4914680_4914790_4915326_4915478_4917568
ENSMUSG00000006463.14_0	chr19	+	3605	2	FSM	ENSMUSG00000006463.14	ENSMUST00000162754.2	939	2	-1061	-1605	2	-8	multi-exon	FALSE	canonical	3	165	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACAAAGATCATGTCTTT	NA	False	NA	12	True	NA	NA	NA	4928733	4935415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4930427_4933503
ENSMUSG00000006463.14_1	chr19	+	2506	3	FSM	ENSMUSG00000006463.14	ENSMUST00000006632.8	2558	3	42	10	-9	-8	multi-exon	FALSE	canonical	3	97	junction_1	34	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACAAAGATCATGTCTTT	NA	False	NA	12	True	NA	NA	NA	4928741	4935415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4929058_4930148_4930427_4933503
ENSMUSG00000006463.14_2	chr19	+	2291	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162134.2	2314	3	15	8	1	-8	multi-exon	TRUE	canonical	3	16	junction_1	74.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACAAAGATCATGTCTTT	NA	False	NA	12	True	NA	NA	NA	4928732	4935415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4928834_4930148_4930427_4933503
ENSMUSG00000006463.14_3	chr19	+	2224	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162088.8	2269	3	38	7	2	-5	multi-exon	FALSE	canonical	2	7	junction_1	79	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGATCATGTCTTTTTG	NA	False	NA	15	True	NA	NA	NA	4928733	4935418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4928765_4930148_4930427_4933503
ENSMUSG00000006463.14_5	chr19	+	1788	1	ISM	ENSMUSG00000006463.14	ENSMUST00000162088.8	2269	3	4932	10	3833	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACAAAGATCATGTCTTT	NA	False	NA	12	True	NA	NA	NA	4933627	4935415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4933600_4935400
ENSMUSG00000006464.10_1	chr19	-	5581	17	FSM	ENSMUSG00000006464.10	ENSMUST00000053506.8	5602	17	8	13	0	-13	multi-exon	FALSE	canonical	2	6	junction_3	3.75832409459323	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCATAATGAATTTATTT	5081	False	NA	NA	False	ATTAAA	-5	NA	4956648	4936918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4940787_4941017_4941105_4941680_4941816_4942915_4943050_4944288_4944448_4944989_4945060_4947307_4947467_4947601_4947723_4949227_4949335_4950518_4950651_4952870_4952944_4953041_4953081_4953173_4953221_4953729_4954003_4956012_4956048_4956169_4956247_4956583
ENSMUSG00000006464.10_14	chr19	-	1227	9	FSM	ENSMUSG00000006464.10	ENSMUST00000235498.2	1244	9	19	-2	19	2	multi-exon	FALSE	canonical	2	10	junction_2	3.11247489949718	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCCAGCTAAATTATTTTA	5102	False	NA	NA	False	NA	NA	NA	4956627	4948827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4949335_4950518_4950651_4952870_4952944_4953041_4953081_4953173_4953221_4953729_4954003_4956012_4956048_4956169_4956247_4956583
ENSMUSG00000006464.10_4	chr19	-	3092	1	ISM	ENSMUSG00000006464.10	ENSMUST00000053506.8	5602	17	16653	6	7742	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAATTTATTTTATTTTG	3072	False	NA	NA	False	ATTAAA	-12	NA	4940003	4936911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4936900_4940000
ENSMUSG00000006469.14_0	chr2	-	1137	5	ISM	ENSMUSG00000006469.14	ENSMUST00000006638.8	2183	13	3035	-2	1717	2	3prime_fragment	FALSE	canonical	2	3	junction_2	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGTTGGCTTTCTCTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	25121341	25118907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25119528_25120584_25120710_25120784_25120902_25120987_25121156_25121234
ENSMUSG00000006471.19_1	chr2	-	2310	14	FSM	ENSMUSG00000006471.19	ENSMUST00000114349.9	2336	14	26	0	0	0	multi-exon	FALSE	canonical	3	150	junction_3	18.4333117547694	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAGCCGCTCACTTCTC	NA	False	NA	-6	True	CATAAA	-16	NA	25145395	25137240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25137867_25137971_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
ENSMUSG00000006471.19_6	chr2	-	2617	11	NIC	ENSMUSG00000006471.19	novel	2336	14	NA	NA	1	0	intron_retention	FALSE	canonical	3	170	junction_5	16.1124175715502	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAGCCGCTCACTTCTC	NA	False	NA	-6	True	CATAAA	-16	NA	25145394	25137240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25137867_25137971_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
ENSMUSG00000006471.19_9	chr2	-	2392	14	NIC	ENSMUSG00000006471.19	novel	2336	14	NA	NA	-6	5	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	48.1394670101744	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGCTCACTTCTCTTTTA	NA	False	NA	-1	True	CATAAA	-21	NA	25145386	25137235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25137867_25137971_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25145040_25145228
ENSMUSG00000006476.20_0	chr2	+	3975	14	NIC	ENSMUSG00000006476.20	novel	2922	15	NA	NA	-1	0	intron_retention	FALSE	canonical	1	2	junction_10	1.86528548507418	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGCTGTGTGGGTCTTCT	9553	False	NA	1	True	ATTAAA	-17	NA	24944417	24952892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24944684_24945009_24945072_24945647_24946149_24947112_24948334_24949032_24949086_24949616_24949707_24950150_24950276_24950490_24950575_24950703_24950738_24950825_24950897_24951070_24951151_24951273_24951377_24951504_24951581_24951683
ENSMUSG00000006476.20_2	chr2	+	2915	15	FSM	ENSMUSG00000006476.20	ENSMUST00000006646.15	2922	15	6	1	6	0	multi-exon	TRUE	canonical	1	2	junction_11	1.80136003041693	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGCTGTGTGGGTCTTCT	9537	False	NA	1	True	ATTAAA	-17	NA	24944401	24952892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_24944684_24945009_24945072_24945647_24946149_24947112_24947189_24948264_24948334_24949032_24949086_24949616_24949707_24950150_24950276_24950490_24950575_24950703_24950738_24950825_24950897_24951070_24951151_24951273_24951377_24951504_24951581_24951683
ENSMUSG00000006494.12_0	chr2	+	3216	11	FSM	ENSMUSG00000006494.12	ENSMUST00000006669.6	5185	11	94	1875	-2	-3	multi-exon	FALSE	canonical	3	206	junction_8	20.4606940253746	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTTTGCCCTCTCCAA	NA	False	NA	8	True	AATAAA	-20	NA	71703661	71732327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_71703910_71705749_71705892_71710382_71710455_71713766_71713952_71714186_71714277_71716325_71716404_71717725_71717803_71719239_71719339_71726032_71726144_71727990_71728105_71730327
ENSMUSG00000006494.12_27	chr2	+	3162	1	ISM	ENSMUSG00000006494.12	ENSMUST00000006669.6	5185	11	27453	20	13259	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACTTTTCTTTGCCTGTA	NA	False	NA	1	True	ATTAAA	-11	NA	71731020	71734182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_71731000_71734200
ENSMUSG00000006498.17_0	chr10	+	2756	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	3	410	-1	2	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	1083	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1588	False	NA	33	True	ATTAAA	-17	NA	79690465	79700195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ENSMUSG00000006498.17_1	chr10	+	2834	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	205	71	-1	2	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	1780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1588	False	NA	33	True	ATTAAA	-17	NA	79690465	79700195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ENSMUSG00000006517.6_0	chr8	-	1747	10	FSM	ENSMUSG00000006517.6	ENSMUST00000006692.6	1756	10	9	0	9	0	multi-exon	FALSE	canonical	3	183	junction_4	22.2211110833319	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGTGTGGGCTGTGCTT	NA	False	NA	-8	True	AATAAA	-17	NA	123170152	123160339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123160915_123161542_123161652_123163212_123163329_123163748_123163968_123164153_123164229_123164565_123164766_123166115_123166263_123166376_123166492_123166920_123166992_123170032
ENSMUSG00000006519.12_0	chr8	-	729	6	FSM	ENSMUSG00000006519.12	ENSMUST00000017604.10	744	6	14	1	-8	-1	multi-exon	FALSE	canonical	3	631	junction_1	96.6531944635044	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACGGACAAGAAATTCTCCA	NA	False	NA	NA	False	AATAAA	-17	NA	123159655	123151515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123151827_123152924_123153007_123153674_123153759_123153967_123154043_123154393_123154464_123159548
ENSMUSG00000006526.14_0	chr14	+	1634	8	FSM	ENSMUSG00000006526.14	ENSMUST00000006701.8	3742	8	19	2089	15	121	multi-exon	FALSE	canonical	3	200	junction_2	11.5387545750335	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGGATTTGTTTGC	NA	False	NA	5	True	TTTAAA	-17	NA	30547565	30597078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30547848_30584836_30584886_30586385_30586482_30588579_30588702_30592707_30592821_30593437_30593516_30594506_30594657_30596334
ENSMUSG00000006527.17_12	chr14	+	4832	22	NIC	ENSMUSG00000006527.17	novel	3299	21	NA	NA	-308	1133	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	25.9699809260048	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACAAATTTAAATTGTGA	NA	False	NA	NA	False	AATATA	-11	NA	30438139	30541436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_30438546_30460495_30460588_30487919_30488059_30491755_30491851_30495841_30496083_30499860_30499950_30505899_30506147_30506657_30506747_30507770_30507873_30509413_30509565_30512690_30512774_30518282_30518410_30519532_30519647_30521697_30521741_30523814_30523877_30524488_30524629_30532252_30532363_30533345_30533522_30537030_30537210_30537364_30537611_30538704_30538834_30539664
ENSMUSG00000006527.17_3	chr14	+	3530	22	NIC	ENSMUSG00000006527.17	novel	7837	21	NA	NA	23	0	combination_of_known_splicesites	TRUE	canonical	3	21	junction_1	23.7565124142027	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTGGCTCTAGGGTT	NA	False	NA	26	True	ATTAAA	-18	NA	30437594	30540302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_30437833_30460495_30460588_30487919_30488059_30491755_30491851_30495841_30496083_30499860_30499950_30505899_30506147_30506657_30506747_30507770_30507873_30509413_30509565_30512690_30512774_30518282_30518410_30519532_30519647_30521697_30521741_30523814_30523877_30524488_30524629_30532252_30532363_30533345_30533522_30537030_30537210_30537364_30537611_30538704_30538834_30539664
ENSMUSG00000006527.17_4	chr14	+	3437	21	FSM	ENSMUSG00000006527.17	ENSMUST00000054230.12	7837	21	24	4376	24	0	multi-exon	FALSE	canonical	3	68	junction_1	13.3913218167588	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTGGCTCTAGGGTT	NA	False	NA	26	True	ATTAAA	-18	NA	30437595	30540302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30437833_30487919_30488059_30491755_30491851_30495841_30496083_30499860_30499950_30505899_30506147_30506657_30506747_30507770_30507873_30509413_30509565_30512690_30512774_30518282_30518410_30519532_30519647_30521697_30521741_30523814_30523877_30524488_30524629_30532252_30532363_30533345_30533522_30537030_30537210_30537364_30537611_30538704_30538834_30539664
ENSMUSG00000006527.17_7	chr14	+	3610	21	FSM	ENSMUSG00000006527.17	ENSMUST00000228006.2	3299	21	-312	1	-312	0	multi-exon	FALSE	canonical	2	11	junction_1	22.2285852001426	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTGGCTCTAGGGTT	NA	False	NA	26	True	ATTAAA	-18	NA	30438135	30540302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30438546_30487919_30488059_30491755_30491851_30495841_30496083_30499860_30499950_30505899_30506147_30506657_30506747_30507770_30507873_30509413_30509565_30512690_30512774_30518282_30518410_30519532_30519647_30521697_30521741_30523814_30523877_30524488_30524629_30532252_30532363_30533345_30533522_30537030_30537210_30537364_30537611_30538704_30538834_30539664
ENSMUSG00000006567.12_0	chr8	-	6528	21	FSM	ENSMUSG00000006567.12	ENSMUST00000006742.11	6505	21	-28	5	-28	-5	multi-exon	FALSE	canonical	1	1	junction_18	3.94810080924994	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGAGTCAGGTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	22550349	22482805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_22484941_22485569_22485673_22487301_22487420_22487498_22487703_22488240_22488384_22490064_22490209_22492723_22492878_22494208_22494392_22496275_22496471_22501030_22501166_22501520_22501676_22501780_22501909_22502726_22502819_22503391_22503626_22504528_22504704_22505893_22505971_22508064_22508227_22510776_22510941_22512312_22512571_22517545_22518753_22549987
ENSMUSG00000006574.16_1	chr11	-	3715	14	ISM	ENSMUSG00000006574.16	ENSMUST00000006749.10	4545	20	6761	3	2049	-3	3prime_fragment	FALSE	canonical	0	0	junction_3	0.92946507489189	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGGTGCCTTGCTTGAA	NA	False	NA	NA	False	AATAAA	-13	NA	102249345	102239652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102241194_102241927_102242102_102242182_102242353_102243264_102243519_102244016_102244184_102244649_102244740_102245091_102245263_102246902_102247098_102247205_102247355_102247542_102247756_102247866_102248078_102248748_102248931_102249043_102249126_102249229
ENSMUSG00000006575.15_0	chr11	+	1909	11	FSM	ENSMUSG00000006575.15	ENSMUST00000006750.8	2046	11	133	4	133	-4	multi-exon	FALSE	canonical	3	171	junction_7	30.0134969638661	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGGTTTCATCTGTTG	7542	False	NA	10	True	AATAAA	-12	NA	102284361	102293377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102284609_102288396_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292806
ENSMUSG00000006575.15_1	chr11	+	2069	10	NIC	ENSMUSG00000006575.15	novel	2046	11	NA	NA	82	-2	intron_retention	FALSE	canonical	3	182	junction_1	28.2204723866982	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGTTTCATCTGTTGGA	7491	False	NA	12	True	AATAAA	-14	NA	102284310	102293379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102284609_102288396_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290872_102291486_102291625_102291719_102291827_102292806
ENSMUSG00000006575.15_19	chr11	+	1889	11	NIC	ENSMUSG00000006575.15	novel	2046	11	NA	NA	136	-6	combination_of_known_junctions	FALSE	canonical	3	27	junction_2	63.1901891119183	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAAGTGGTTTCATCTGT	7545	False	NA	8	True	AATAAA	-10	NA	102284364	102293375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102284609_102288396_102288513_102288925_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292806
ENSMUSG00000006575.15_34	chr11	+	1648	10	ISM	ENSMUSG00000006575.15	ENSMUST00000006750.8	2046	11	4182	4	-279	-4	3prime_fragment	FALSE	canonical	3	171	junction_6	29.8663690461362	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGGTTTCATCTGTTG	3204	False	NA	10	True	AATAAA	-12	NA	102288410	102293377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292806
ENSMUSG00000006575.15_8	chr11	+	1691	11	FSM	ENSMUSG00000006575.15	ENSMUST00000107102.8	1837	11	142	4	142	-4	multi-exon	FALSE	canonical	3	49	junction_10	57.4930430573996	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACCTTGGGGAGACAGAG	7551	False	NA	7	True	NA	NA	NA	102284370	102292576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102284609_102288396_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292214
ENSMUSG00000006576.17_1	chr1	+	4071	23	FSM	ENSMUSG00000006576.17	ENSMUST00000124341.8	7182	23	20	3091	-10	191	multi-exon	FALSE	canonical	0	0	junction_3	4.09797369803078	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGCCTCATTTTCTT	1116	False	NA	NA	False	NA	NA	NA	75522929	75535725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75523027_75523415_75523566_75523876_75524043_75524587_75524866_75524959_75525076_75525512_75525710_75527147_75527297_75527398_75527580_75527890_75528027_75528280_75528465_75528796_75528897_75529266_75529452_75529899_75530126_75530267_75530487_75530803_75530953_75531145_75531341_75531566_75531786_75532054_75532145_75532582_75532750_75533387_75533642_75533916_75534087_75534270_75534445_75535456
ENSMUSG00000006585.4_0	chr8	+	2168	10	FSM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	21	0	10	0	multi-exon	FALSE	canonical	3	858	junction_2	66.8792905627208	1493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGAACCTGTCACCGTA	2607	False	NA	27	True	AATAAA	-36	NA	123294774	123299867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
ENSMUSG00000006585.4_1	chr8	+	2167	10	NNC	ENSMUSG00000006585.4	novel	2189	10	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	302.112234888188	126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGAACCTGTCACCGTA	2607	False	NA	27	True	AATAAA	-36	NA	123294774	123299867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298877_123299232
ENSMUSG00000006586.16_0	chr4	+	3493	11	FSM	ENSMUSG00000006586.16	ENSMUST00000006761.10	5783	11	-244	2534	-244	-2	multi-exon	FALSE	canonical	0	0	junction_1	2.05182845286832	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	399	False	NA	NA	False	NA	NA	NA	13743191	13891115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_13743730_13835632_13835771_13837759_13838002_13841797_13841888_13846775_13846958_13859810_13860062_13865200_13865287_13865830_13866033_13875476_13875546_13881049_13881241_13889611
ENSMUSG00000006586.16_1	chr4	+	3667	12	NIC	ENSMUSG00000006586.16	novel	5783	11	NA	NA	-250	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	2.06505758029101	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGTTAAAAAAAAAAAAAAAG	393	False	NA	NA	False	NA	NA	NA	13743185	13891113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_13743730_13771375_13771546_13835632_13835771_13837759_13838002_13841797_13841888_13846775_13846958_13859810_13860062_13865200_13865287_13865830_13866033_13875476_13875546_13881049_13881241_13889611
ENSMUSG00000006587.7_0	chr8	-	1583	3	FSM	ENSMUSG00000006587.7	ENSMUST00000006762.7	1628	3	45	0	45	0	multi-exon	FALSE	canonical	3	3	junction_2	1	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCTTGACGTCTCGAG	NA	False	NA	NA	False	AATAAA	-27	NA	123187427	123180946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123181774_123182861_123183468_123187277
ENSMUSG00000006589.9_1	chr8	-	833	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	13	3	13	-3	multi-exon	FALSE	canonical	0	0	junction_3	617.095414016342	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGCTGCTTCTCCTCAG	NA	False	NA	-10	True	AATAAA	-12	NA	123303616	123301378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
ENSMUSG00000006589.9_4	chr8	-	1248	5	FSM	ENSMUSG00000006589.9	ENSMUST00000213029.2	929	5	-41	-278	-4	-1	multi-exon	FALSE	canonical	3	286	junction_3	493.303152229945	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTGCTTCTCCTCAGTT	NA	False	NA	-8	True	AATAAA	-14	NA	123303633	123301376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123303361_123303491
ENSMUSG00000006589.9_8	chr8	-	768	4	ISM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	209	3	-10	-3	3prime_fragment	FALSE	canonical	0	0	junction_3	665.62518648928	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGCTGCTTCTCCTCAG	NA	False	NA	-10	True	AATAAA	-12	NA	123303420	123301378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253
ENSMUSG00000006599.14_1	chr7	+	2718	15	FSM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	15	3	4	-3	multi-exon	FALSE	canonical	3	472	junction_5	47.1406925910002	927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTGCCTCTCTTGGAGT	4721	False	NA	1	True	AATAAA	-12	NA	46445541	46473221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
ENSMUSG00000006599.14_2	chr7	+	2787	16	NIC	ENSMUSG00000006599.14	novel	2736	15	NA	NA	4	-3	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	187.878920821067	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTGCCTCTCTTGGAGT	4721	False	NA	1	True	AATAAA	-12	NA	46445541	46473221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_46445713_46446820_46446890_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
ENSMUSG00000006599.14_3	chr7	+	1791	14	ISM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	21	4532	10	-3641	5prime_fragment	FALSE	canonical	3	472	junction_5	48.9200531237767	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCGAGTACATTGTTCT	4727	False	NA	NA	False	NA	NA	NA	46445547	46468692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545
ENSMUSG00000006638.16_0	chr5	+	4267	7	NIC	ENSMUSG00000006638.16	novel	1352	9	NA	NA	-25	-41	intron_retention	FALSE	canonical	3	60	junction_3	7.45542308211501	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTGTTCTCTCTTTATT	NA	False	NA	-24	True	NA	NA	NA	31107384	31112392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
ENSMUSG00000006638.16_1	chr5	+	1349	9	FSM	ENSMUSG00000006638.16	ENSMUST00000201125.4	1352	9	1	2	1	0	multi-exon	FALSE	canonical	3	60	junction_5	7.48331477354788	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGAGCTGAGGTTCCCTTT	NA	False	NA	17	True	ATTAAA	-19	NA	31107410	31112433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31107593_31110228_31110390_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
ENSMUSG00000006638.16_6	chr5	+	1183	8	NIC	ENSMUSG00000006638.16	novel	1352	9	NA	NA	5	-1	intron_retention	FALSE	canonical	3	6	junction_1	24.272265183597	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACGAGCTGAGGTTCCCTT	NA	False	NA	16	True	ATTAAA	-18	NA	31107414	31112432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31107593_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
ENSMUSG00000006641.13_1	chr5	-	3104	18	NNC	ENSMUSG00000006641.13	novel	3078	18	NA	NA	-18	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	32.3827670006119	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTGGCCTCTGTGTTC	785	False	NA	-3	True	AATAAA	-17	NA	31205371	31193381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205143_31205309
ENSMUSG00000006641.13_15	chr5	-	2933	17	FSM	ENSMUSG00000006641.13	ENSMUST00000202520.4	3248	17	314	1	314	0	multi-exon	FALSE	canonical	3	71	junction_13	19.5252240704172	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGGCCTCTGTGTTCC	1124	False	NA	-2	True	AATAAA	-18	NA	31205032	31193380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973
ENSMUSG00000006641.13_2	chr5	-	3126	18	NIC	ENSMUSG00000006641.13	novel	3078	18	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_17	22.1293773649543	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGGCCTCTGTGTTCC	765	False	NA	-2	True	AATAAA	-18	NA	31205391	31193380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205309
ENSMUSG00000006641.13_3	chr5	-	3217	18	FSM	ENSMUSG00000006641.13	ENSMUST00000080431.8	3218	18	-5	6	-5	-5	multi-exon	FALSE	canonical	2	5	junction_17	31.4360998487793	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGGTGTCTGGCCTCTGT	NA	False	NA	-7	True	AATAAA	-13	NA	31206273	31193385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31206095
ENSMUSG00000006641.13_7	chr5	-	3098	18	FSM	ENSMUSG00000006641.13	ENSMUST00000114668.7	3436	18	337	1	-146	0	multi-exon	FALSE	canonical	3	19	junction_17	28.8754634169437	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGGCCTCTGTGTTCC	587	False	NA	-2	True	AATAAA	-18	NA	31205569	31193380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205515
ENSMUSG00000006641.13_8	chr5	-	2526	15	ISM	ENSMUSG00000006641.13	ENSMUST00000202520.4	3248	17	4812	1	-585	0	3prime_fragment	TRUE	canonical	3	71	junction_13	20.0881983832726	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGGCCTCTGTGTTCC	5622	False	NA	-2	True	AATAAA	-18	NA	31200534	31193380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293
ENSMUSG00000006649.18_0	chr7	+	2791	20	ISM	ENSMUSG00000006649.18	ENSMUST00000006825.9	4608	30	4100	-6	4100	6	3prime_fragment	FALSE	canonical	2	12	junction_1	14.2015566233535	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTCTGTTCCAAGC	NA	False	NA	NA	False	NA	NA	NA	30163249	30186654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_30163328_30164890_30165078_30165176_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
ENSMUSG00000006649.18_12	chr7	+	2828	19	ISM	ENSMUSG00000006649.18	ENSMUST00000006825.9	4608	30	5626	-6	5626	6	3prime_fragment	FALSE	canonical	2	33	junction_1	11.515555769973	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTCTGTTCCAAGC	NA	False	NA	NA	False	NA	NA	NA	30164775	30186654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_30165078_30165176_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
ENSMUSG00000006649.18_13	chr7	+	3866	18	NIC	ENSMUSG00000006649.18	novel	4608	30	NA	NA	5626	6	intron_retention	FALSE	canonical	2	33	junction_1	11.5237080729627	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTCTGTTCCAAGC	NA	False	NA	NA	False	NA	NA	NA	30164775	30186654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30165078_30165176_30165307_30165433_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
ENSMUSG00000006649.18_16	chr7	+	2771	19	NNC	ENSMUSG00000006649.18	novel	4608	30	NA	NA	5767	6	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_3	14.2837212013545	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTCTGTTCCAAGC	NA	False	NA	NA	False	NA	NA	NA	30164916	30186654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_30165078_30165176_30165307_30165433_30165607_30166560_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
ENSMUSG00000006649.18_18	chr7	+	2932	18	NIC	ENSMUSG00000006649.18	novel	4608	30	NA	NA	5621	6	intron_retention	FALSE	canonical	2	34	junction_4	10.9591882102815	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTCTGTTCCAAGC	NA	False	NA	NA	False	NA	NA	NA	30164770	30186654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
ENSMUSG00000006649.18_25	chr7	+	2420	17	ISM	ENSMUSG00000006649.18	ENSMUST00000006825.9	4608	30	6260	-6	6260	6	3prime_fragment	FALSE	canonical	2	34	junction_3	11.1943065886191	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTCTGTTCCAAGC	NA	False	NA	NA	False	NA	NA	NA	30165409	30186654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
ENSMUSG00000006651.9_0	chr7	-	2379	17	FSM	ENSMUSG00000006651.9	ENSMUST00000006828.9	2343	17	-37	1	-37	-1	multi-exon	TRUE	canonical	3	317	junction_16	59.4064390449386	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATCCCGTGTTTCTGTTGG	NA	False	NA	-3	True	AATAAA	-19	NA	30144997	30134407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211_30136320_30137602_30137703_30139359_30139489_30139568_30139728_30140479_30140555_30141066_30141198_30141594_30141786_30141904_30142039_30142222_30142336_30142516_30142650_30143742_30143887_30144746
ENSMUSG00000006651.9_12	chr7	-	1328	9	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	5067	-6	10	0	3prime_fragment	FALSE	canonical	3	360	junction_6	42.8711732986164	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30139847	30134406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211_30136320_30137602_30137703_30139359_30139489_30139568
ENSMUSG00000006651.9_3	chr7	-	972	6	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	8443	-6	-43	0	3prime_fragment	FALSE	canonical	3	430	junction_4	31.3496411462715	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30136471	30134406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211
ENSMUSG00000006673.15_0	chr9	+	3226	10	NIC	ENSMUSG00000006673.15	novel	3331	11	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	173.205152034684	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGCTACTGGAGAACGT	1164	False	NA	61	True	NA	NA	NA	108394302	108437359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108394452_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ENSMUSG00000006673.15_3	chr9	+	3216	10	FSM	ENSMUSG00000006673.15	ENSMUST00000112155.9	3040	10	-8	-168	-1	-3	multi-exon	FALSE	canonical	3	392	junction_1	89.886485340754	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGCTACTGGAGAACGT	1162	False	NA	61	True	NA	NA	NA	108394300	108437359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ENSMUSG00000006673.15_31	chr9	+	3442	11	Fusion	ENSMUSG00000103970.2_ENSMUSG00000006673.15	novel	721	3	NA	NA	49	-3	multi-exon	FALSE	canonical	3	61	junction_1	223.453440340488	157	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGCTACTGGAGAACGT	1732	False	NA	61	True	NA	NA	NA	108394870	108437359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr9_+_108395176_108395965_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ENSMUSG00000006673.15_34	chr9	+	3351	10	Fusion	ENSMUSG00000103970.2_ENSMUSG00000006673.15	novel	756	3	NA	NA	80	-3	multi-exon	FALSE	canonical	3	32	junction_1	198.101046669012	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGCTACTGGAGAACGT	1763	False	NA	61	True	NA	NA	NA	108394901	108437359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr9_+_108395176_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ENSMUSG00000006673.15_37	chr9	+	4276	10	ISM	ENSMUSG00000006673.15	ENSMUST00000006851.15	3331	11	514	3	5	-3	3prime_fragment	FALSE	canonical	3	141	junction_1	164.63899902514	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGCTACTGGAGAACGT	1688	False	NA	61	True	NA	NA	NA	108394826	108437359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ENSMUSG00000006673.15_57	chr9	+	2305	8	ISM	ENSMUSG00000006673.15	ENSMUST00000006851.15	3331	11	16915	3	5617	-3	3prime_fragment	FALSE	canonical	3	596	junction_2	42.5037813443866	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGCTACTGGAGAACGT	NA	False	NA	61	True	NA	NA	NA	108411227	108437359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ENSMUSG00000006673.15_7	chr9	+	3273	11	NIC	ENSMUSG00000006673.15	novel	3331	11	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	232.186649056314	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGCTACTGGAGAACGT	1165	False	NA	61	True	NA	NA	NA	108394303	108437359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108394440_108395965_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ENSMUSG00000006675.11_1	chr9	-	1739	9	FSM	ENSMUSG00000006675.11	ENSMUST00000006853.11	1841	9	81	21	-6	-21	multi-exon	FALSE	canonical	2	23	junction_3	12.7273082385868	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGGGCCGGCGAGCTA	NA	False	NA	-19	True	AATAAA	-15	NA	108474785	108456081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108456508_108456914_108457039_108457214_108457306_108457917_108458104_108459040_108459204_108460045_108460143_108460840_108461032_108474097_108474180_108474406
ENSMUSG00000006675.11_12	chr9	-	1836	10	NIC	ENSMUSG00000006675.11	novel	1841	9	NA	NA	-5	-21	combination_of_known_junctions	FALSE	canonical	2	11	junction_5	18.6474769087329	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGGGCCGGCGAGCTA	NA	False	NA	-19	True	AATAAA	-15	NA	108474784	108456081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108456508_108456914_108457039_108457214_108457306_108457917_108458104_108459040_108459204_108459280_108459379_108460045_108460143_108460840_108461032_108474097_108474180_108474406
ENSMUSG00000006675.11_14	chr9	-	2053	9	NIC	ENSMUSG00000006675.11	novel	1841	9	NA	NA	1	-21	intron_retention	FALSE	canonical	2	11	junction_5	19.5923294939627	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGGGCCGGCGAGCTA	NA	False	NA	-19	True	AATAAA	-15	NA	108474774	108456081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108456508_108456914_108457039_108457214_108457306_108457917_108458104_108459040_108459204_108459280_108459379_108460045_108460143_108460840_108461032_108474097
ENSMUSG00000006675.11_17	chr9	-	2313	3	ISM	ENSMUSG00000006675.11	ENSMUST00000006853.11	1841	9	15889	21	1158	-21	intron_retention	FALSE	canonical	3	60	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGGGCCGGCGAGCTA	2712	False	NA	-19	True	AATAAA	-15	NA	108458977	108456081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_108456508_108456914_108457039_108457214
ENSMUSG00000006675.11_2	chr9	-	2468	9	NIC	ENSMUSG00000006675.11	novel	1841	9	NA	NA	-6	-2	intron_retention	FALSE	canonical	3	11	junction_4	18.9369843164111	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCGCCCGCTTGGGGGAGG	NA	False	NA	0	True	AATAAA	-34	NA	108474785	108456062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108456508_108456914_108457039_108457214_108458104_108459040_108459204_108459280_108459379_108460045_108460143_108460840_108461032_108474097_108474180_108474406
ENSMUSG00000006675.11_5	chr9	-	2352	8	NIC	ENSMUSG00000006675.11	novel	1841	9	NA	NA	-6	-20	intron_retention	FALSE	canonical	3	31	junction_7	10.0772526220277	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGGGCCGGCGAGCTAA	NA	False	NA	-18	True	AATAAA	-16	NA	108474785	108456080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108456508_108456914_108457039_108457214_108458104_108459040_108459204_108460045_108460143_108460840_108461032_108474097_108474180_108474406
ENSMUSG00000006675.11_9	chr9	-	2694	8	NIC	ENSMUSG00000006675.11	novel	1841	9	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	11	junction_4	19.905901083829	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCGCCCGCTTGGGGGAGG	NA	False	NA	0	True	AATAAA	-34	NA	108474784	108456062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108456508_108456914_108457039_108457214_108458104_108459040_108459204_108459280_108459379_108460045_108460143_108460840_108461032_108474097
ENSMUSG00000006676.17_1	chr9	+	4629	27	FSM	ENSMUSG00000006676.17	ENSMUST00000178075.8	4512	27	-119	2	-103	-2	multi-exon	FALSE	canonical	3	222	junction_10	41.4654094097091	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTAGTGACTGATCCAC	NA	False	NA	9	True	AATAAA	-13	NA	108367935	108379514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370759_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372232_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108379038
ENSMUSG00000006676.17_11	chr9	+	4627	27	NIC	ENSMUSG00000006676.17	novel	4517	27	NA	NA	-79	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_26	69.5979153601974	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTCTCTCTGTCTAA	NA	False	NA	15	True	AATAAA	-17	NA	108367959	108378896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370759_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372238_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108378392
ENSMUSG00000006676.17_15	chr9	+	4599	27	FSM	ENSMUSG00000006676.17	ENSMUST00000085044.14	4520	27	-85	6	-80	-6	multi-exon	FALSE	canonical	3	46	junction_5	64.3458319914706	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGACTTAGTGACTGAT	NA	False	NA	5	True	AATAAA	-9	NA	108367958	108379510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370762_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372232_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108379038
ENSMUSG00000006676.17_4	chr9	+	4654	27	NIC	ENSMUSG00000006676.17	novel	4791	27	NA	NA	-101	-1	combination_of_known_junctions	FALSE	canonical	3	70	junction_26	61.820028925352	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATCTTGTCTCTCTGTCTA	NA	False	NA	14	True	AATAAA	-16	NA	108367937	108378895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370759_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372232_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108378392
ENSMUSG00000006676.17_5	chr9	+	4623	27	FSM	ENSMUSG00000006676.17	ENSMUST00000193678.6	4517	27	-106	0	-101	0	multi-exon	FALSE	canonical	3	118	junction_10	53.0108423653503	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAGTGACTGATCCACAA	NA	False	NA	11	True	AATAAA	-15	NA	108367937	108379516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370759_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372238_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108379038
ENSMUSG00000006676.17_6	chr9	+	4622	27	NIC	ENSMUSG00000006676.17	novel	4520	27	NA	NA	-109	-6	combination_of_known_junctions	FALSE	canonical	3	46	junction_5	71.9086061131496	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGACTTAGTGACTGAT	NA	False	NA	5	True	AATAAA	-9	NA	108367929	108379510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370762_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372238_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108379038
ENSMUSG00000006678.7_15	chrX	-	5204	36	NIC	ENSMUSG00000006678.7	novel	5346	37	NA	NA	2	-11	combination_of_known_splicesites	FALSE	canonical	3	18	junction_25	84.0379408969787	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAAAACCAGTTACTGT	4291	False	NA	-13	True	AATAAA	-8	NA	92675747	92348383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
ENSMUSG00000006678.7_3	chrX	-	5325	37	FSM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	10	11	-2	-11	multi-exon	FALSE	canonical	3	370	junction_20	43.7489682418023	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAAAACCAGTTACTGT	4287	False	NA	-13	True	AATAAA	-8	NA	92675751	92348383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
ENSMUSG00000006678.7_30	chrX	-	5231	36	NIC	ENSMUSG00000006678.7	novel	5346	37	NA	NA	2	-7	combination_of_known_splicesites	FALSE	canonical	2	20	junction_1	83.6951221361661	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACCAGTTACTGTGTTT	4291	False	NA	-9	True	AATAAA	-12	NA	92675747	92348379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_92349423_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
ENSMUSG00000006699.18_0	chr4	-	2026	5	ISM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	21589	9	21568	-9	3prime_fragment	FALSE	canonical	3	1798	junction_1	43.0203440246588	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGTGAGCCTGAAGGTT	NA	False	NA	-10	True	ATTAAA	-15	NA	137063442	137047015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285
ENSMUSG00000006699.18_1	chr4	-	2060	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	39	9	18	-9	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	1417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGTGAGCCTGAAGGTT	NA	False	NA	-10	True	ATTAAA	-15	NA	137084992	137047015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ENSMUSG00000006699.18_3	chr4	-	946	1	ISM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	37071	8	37050	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTGAGCCTGAAGGTTA	832	False	NA	-9	True	ATTAAA	-16	NA	137047960	137047014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_137047000_137048000
ENSMUSG00000006705.14_0	chr17	+	4154	11	FSM	ENSMUSG00000006705.14	ENSMUST00000097352.11	4252	11	58	40	-15	-40	multi-exon	FALSE	canonical	3	101	junction_5	23.0781281736626	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAAAAAATTAAAA	NA	False	NA	-11	True	TTTAAA	-29	NA	31783765	31826627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_31783863_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814198_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726
ENSMUSG00000006705.14_2	chr17	+	4402	12	FSM	ENSMUSG00000006705.14	ENSMUST00000175806.9	2170	12	-58	-2174	-3	-27	multi-exon	FALSE	canonical	3	29	junction_2	48.0870422916989	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAACCAGAAACATGCC	NA	False	NA	2	True	AAGAAA	-7	NA	31783777	31826640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_31783863_31800777_31801025_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814198_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726
ENSMUSG00000006705.14_25	chr17	+	2415	1	ISM	ENSMUSG00000006705.14	ENSMUST00000097352.11	4252	11	40505	40	2501	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAAAAAATTAAAA	3860	False	NA	-11	True	TTTAAA	-29	NA	31824212	31826627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_31824200_31826600
ENSMUSG00000006705.14_3	chr17	+	4161	11	FSM	ENSMUSG00000006705.14	ENSMUST00000237248.2	2014	11	-9	-2138	-9	-24	multi-exon	FALSE	canonical	3	26	junction_5	40.2970222224918	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCAGAAACATGCCTTG	NA	False	NA	5	True	AAGAAA	-10	NA	31783771	31826643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_31783863_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814201_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726
ENSMUSG00000006705.14_6	chr17	+	4153	11	NIC	ENSMUSG00000006705.14	novel	4252	11	NA	NA	-20	-40	intron_retention	FALSE	canonical	3	16	junction_7	43.5413596480404	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAAAAAATTAAAA	NA	False	NA	-11	True	TTTAAA	-29	NA	31783760	31826627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_31783863_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814198_31814299_31815769_31815868_31818494_31818618_31821759_31821837_31822160_31822334_31823726
ENSMUSG00000006715.12_0	chr13	-	975	7	FSM	ENSMUSG00000006715.12	ENSMUST00000110382.9	963	7	-14	2	-14	-2	multi-exon	FALSE	canonical	3	1483	junction_6	81.6382603658086	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCGTGGAGAATTAAGT	NA	False	NA	-10	True	AATAAA	-24	NA	24945920	24935829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945795
ENSMUSG00000006717.8_0	chr13	-	665	3	FSM	ENSMUSG00000006717.8	ENSMUST00000006900.7	721	3	49	7	49	-7	multi-exon	FALSE	canonical	3	260	junction_1	3	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGTAGCTAAGGAAGTAT	4866	False	NA	-10	True	AATAAA	-12	NA	25015451	25001937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_25002175_25004697_25004883_25015208
ENSMUSG00000006720.17_0	chr13	+	2703	6	FSM	ENSMUSG00000006720.17	ENSMUST00000176511.8	2703	6	-2	2	-2	-2	multi-exon	FALSE	canonical	3	28	junction_1	19.7949488506538	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGCTTTAAGTTTCTTC	NA	False	NA	10	True	ATTAAA	-14	NA	22129261	22144653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_22129370_22129725_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
ENSMUSG00000006720.17_12	chr13	+	1520	1	ISM	ENSMUSG00000006720.17	ENSMUST00000176511.8	2703	6	13870	2	9570	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGCTTTAAGTTTCTTC	NA	False	NA	10	True	ATTAAA	-14	NA	22143133	22144653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_22143100_22144700
ENSMUSG00000006720.17_2	chr13	+	2746	6	FSM	ENSMUSG00000006720.17	ENSMUST00000102978.8	3198	6	156	296	131	-2	multi-exon	FALSE	canonical	3	46	junction_1	13.42236938845	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGCTTTAAGTTTCTTC	NA	False	NA	10	True	ATTAAA	-14	NA	22129437	22144653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_22129589_22129725_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
ENSMUSG00000006720.17_4	chr13	+	2886	5	FSM	ENSMUSG00000006720.17	ENSMUST00000006903.8	2214	5	-528	-144	128	-2	multi-exon	FALSE	canonical	3	62	junction_4	8.4372685153431	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGCTTTAAGTTTCTTC	NA	False	NA	10	True	ATTAAA	-14	NA	22129434	22144653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
ENSMUSG00000006720.17_7	chr13	+	2776	6	NIC	ENSMUSG00000006720.17	novel	3198	6	NA	NA	132	-2	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	28.5769137591868	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGCTTTAAGTTTCTTC	NA	False	NA	10	True	ATTAAA	-14	NA	22129438	22144653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_22129589_22129725_22129970_22131172_22131241_22133829_22133957_22134372_22134500_22142593
ENSMUSG00000006724.13_1	chr10	+	2187	8	ISM	ENSMUSG00000006724.13	ENSMUST00000165764.8	2380	9	800	-18	379	18	3prime_fragment	FALSE	canonical	0	0	junction_1	1.49829835452879	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTTTATATATATTAC	NA	False	NA	NA	False	NA	NA	NA	126884918	126888856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_126885125_126885548_126885752_126885837_126886039_126886110_126886284_126886546_126886717_126886918_126886998_126887381_126887580_126887899
ENSMUSG00000006728.13_2	chr10	+	1334	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	72	647	2	-24	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	3709	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGACAAAGAGTATGGTC	NA	False	NA	5	True	AAAACA	-3	NA	126899474	126903142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
ENSMUSG00000006731.11_0	chr10	+	2440	11	FSM	ENSMUSG00000006731.11	ENSMUST00000006914.11	2395	11	-46	1	-46	-1	multi-exon	FALSE	canonical	3	39	junction_6	12.214745187682	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTACTTGTGTCTCTGT	308	False	NA	7	True	GGGGCT	-22	NA	127001047	127008198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569_127003751_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
ENSMUSG00000006731.11_1	chr10	+	1697	6	FSM	ENSMUSG00000006731.11	ENSMUST00000219523.2	1497	6	-208	8	-55	-7	multi-exon	FALSE	canonical	3	48	junction_1	9.6	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACACATTTTCAATTTTT	299	False	NA	NA	False	ATTAAA	-16	NA	127001038	127004384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569
ENSMUSG00000006731.11_11	chr10	+	1521	5	FSM	ENSMUSG00000006731.11	ENSMUST00000220055.2	1499	5	-37	15	-9	-15	multi-exon	FALSE	canonical	3	64	junction_1	5.19615242270663	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTATTTAGAACACATTTT	951	False	NA	NA	False	ATTAAA	-8	NA	127001690	127004376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569
ENSMUSG00000006731.11_2	chr10	+	2284	10	FSM	ENSMUSG00000006731.11	ENSMUST00000217678.2	2212	10	-79	7	-77	-7	multi-exon	FALSE	canonical	3	10	junction_5	17.4384278371675	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCATTTTTACTTGTGT	277	False	NA	1	True	GGGGCT	-16	NA	127001016	127008192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
ENSMUSG00000006731.11_3	chr10	+	2910	10	NIC	ENSMUSG00000006731.11	novel	2395	11	NA	NA	-32	-1	intron_retention	FALSE	canonical	3	39	junction_5	12.6383699527165	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTACTTGTGTCTCTGT	322	False	NA	7	True	GGGGCT	-22	NA	127001061	127008198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569_127003751_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
ENSMUSG00000006731.11_7	chr10	+	3322	1	Genic_Genomic	ENSMUSG00000006731.11	novel	NA	NA	NA	NA	-32	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAACACATTTTCAATTTT	322	False	NA	NA	False	ATTAAA	-15	NA	127001061	127004383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_+_127001100_127004400
ENSMUSG00000006732.15_0	chr10	+	1352	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	26	413	0	53	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTGTGTGGCTCAGGT	NA	False	NA	4	True	NA	NA	NA	126877826	126881821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
ENSMUSG00000006736.10_0	chr10	-	1529	6	FSM	ENSMUSG00000006736.10	ENSMUST00000060991.6	1556	6	0	27	0	-27	multi-exon	FALSE	canonical	3	545	junction_1	41.1698919114442	541	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAATAAAGACCATA	NA	False	NA	-27	True	AAAACA	-3	NA	126906133	126903175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_126904060_126904137_126904252_126904348_126904481_126904776_126904858_126905214_126905383_126905983
ENSMUSG00000006740.15_1	chr18	-	5831	27	NNC	ENSMUSG00000006740.15	novel	6032	26	NA	NA	6	-26	intron_retention	TRUE	non_canonical	0	0	junction_1	281.066818057589	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTAATGACACATTTGA	1	True	NA	-26	True	AATAAA	-16	NA	6241517	6201027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_6202204_6202372_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
ENSMUSG00000006740.15_3	chr18	-	5999	26	FSM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	7	26	7	-26	multi-exon	TRUE	canonical	0	0	junction_8	215.348105169282	942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTAATGACACATTTGA	2	True	NA	-26	True	AATAAA	-16	NA	6241516	6201027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
ENSMUSG00000006763.15_0	chr7	-	1510	12	FSM	ENSMUSG00000006763.15	ENSMUST00000143082.4	4728	12	20	3198	1	-2	multi-exon	FALSE	canonical	3	340	junction_6	40.4362573576105	353	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGGCATCGGGATGATG	NA	False	NA	-14	True	AATAAA	-22	NA	46360084	46338729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
ENSMUSG00000006782.17_0	chr11	+	2285	4	FSM	ENSMUSG00000006782.17	ENSMUST00000103120.5	2357	4	70	2	70	-2	multi-exon	FALSE	canonical	3	73	junction_2	8.2192186706253	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGTGTGCTATCACTCT	NA	False	NA	17	True	AATAAA	-13	NA	100465799	100472552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100465895_100467061_100467732_100469738_100469879_100471172
ENSMUSG00000006782.17_4	chr11	+	1995	3	FSM	ENSMUSG00000006782.17	ENSMUST00000150414.8	2904	3	907	2	540	-2	multi-exon	FALSE	canonical	3	73	junction_1	6	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGTGTGCTATCACTCT	NA	False	NA	17	True	AATAAA	-13	NA	100467256	100472552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100467732_100469738_100469879_100471172
ENSMUSG00000006784.15_0	chr11	+	2135	12	FSM	ENSMUSG00000006784.15	ENSMUST00000092684.12	2240	12	101	4	-2	-4	multi-exon	FALSE	canonical	2	3	junction_1	9.12538915733062	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGATCTTGAGTGACACT	NA	False	NA	NA	False	ATTAAA	-18	NA	100436533	100462785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100436735_100440628_100440761_100441010_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
ENSMUSG00000006784.15_10	chr11	+	3412	5	NIC	ENSMUSG00000006784.15	novel	2240	12	NA	NA	3605	-1	intron_retention	FALSE	canonical	3	29	junction_1	1.87082869338697	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTTGAGTGACACTGTG	2027	False	NA	NA	False	ATTAAA	-21	NA	100443977	100462788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681
ENSMUSG00000006784.15_2	chr11	+	1961	11	ISM	ENSMUSG00000006784.15	ENSMUST00000092684.12	2240	12	4170	3	230	-3	3prime_fragment	FALSE	canonical	3	16	junction_2	6.19354502688081	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGATCTTGAGTGACACTG	NA	False	NA	NA	False	ATTAAA	-19	NA	100440602	100462786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100440761_100441010_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
ENSMUSG00000006784.15_4	chr11	+	1831	9	ISM	ENSMUSG00000006784.15	ENSMUST00000092684.12	2240	12	5170	3	1230	-3	3prime_fragment	FALSE	canonical	3	25	junction_3	3.47985272676876	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGATCTTGAGTGACACTG	NA	False	NA	NA	False	ATTAAA	-19	NA	100441602	100462786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
ENSMUSG00000006784.15_5	chr11	+	1235	7	ISM	ENSMUSG00000006784.15	ENSMUST00000092684.12	2240	12	8065	10	4125	-10	3prime_fragment	FALSE	canonical	3	25	junction_1	3.53160335006952	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTTATAGATCTTGAGT	2547	False	NA	NA	False	ATTAAA	-12	NA	100444497	100462779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
ENSMUSG00000006784.15_6	chr11	+	1360	6	NIC	ENSMUSG00000006784.15	novel	2240	12	NA	NA	4158	-1	intron_retention	FALSE	canonical	3	29	junction_1	2.60768096208106	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTTGAGTGACACTGTG	2580	False	NA	NA	False	ATTAAA	-21	NA	100444530	100462788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
ENSMUSG00000006784.15_9	chr11	+	1897	10	ISM	ENSMUSG00000006784.15	ENSMUST00000092684.12	2240	12	4484	3	544	-3	3prime_fragment	FALSE	canonical	3	16	junction_1	5.45690184791497	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGATCTTGAGTGACACTG	NA	False	NA	NA	False	ATTAAA	-19	NA	100440916	100462786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
ENSMUSG00000006800.15_11	chr2	-	3755	21	NIC	ENSMUSG00000006800.15	novel	3927	21	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_20	182.354352840836	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCTATCTTGGGACTT	NA	False	NA	-16	True	NA	NA	NA	165996764	165915839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996597
ENSMUSG00000006800.15_15	chr2	-	3794	22	NIC	ENSMUSG00000006800.15	novel	3927	21	NA	NA	186	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_21	255.172272962579	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCTATCTTGGGACTT	NA	False	NA	-16	True	NA	NA	NA	165997019	165915839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165983633_165983687_165996866
ENSMUSG00000006800.15_2	chr2	-	3766	21	FSM	ENSMUSG00000006800.15	ENSMUST00000088086.4	3927	21	161	0	161	0	multi-exon	FALSE	canonical	3	542	junction_20	98.8976617519343	1616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCTATCTTGGGACTT	NA	False	NA	-16	True	NA	NA	NA	165997044	165915839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996866
ENSMUSG00000006800.15_8	chr2	-	3742	21	FSM	ENSMUSG00000006800.15	ENSMUST00000109249.9	4580	21	7	831	7	0	multi-exon	FALSE	canonical	0	0	junction_20	203.951336107416	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCTATCTTGGGACTT	NA	False	NA	-16	True	NA	NA	NA	165997576	165915839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165997422
ENSMUSG00000006818.6_12	chr17	+	927	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	153	4781	-26	-263	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	1620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTCTGTGTGAATTGCTC	NA	False	NA	45	True	ATTAAA	-33	NA	13226856	13234240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUSG00000006818.6_28	chr17	+	823	4	ISM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	367	4786	0	-268	3prime_fragment	FALSE	canonical	3	3082	junction_3	122.60052564687	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCATACTCTGTGTGAAT	NA	False	NA	40	True	ATTAAA	-28	NA	13227070	13234235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUSG00000006818.6_37	chr17	+	2190	1	ISM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	8107	2021	5584	-2021	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTATCCAGTGGTATGCT	4598	False	NA	NA	False	AATAAA	-13	NA	13234810	13237000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_13234800_13237000
ENSMUSG00000006850.9_0	chr18	+	1738	12	FSM	ENSMUSG00000006850.9	ENSMUST00000007046.9	1823	12	77	8	3	-8	multi-exon	FALSE	canonical	3	53	junction_4	9.25845604107201	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAAACTACTTTGCCTC	NA	False	NA	45	True	AATAAA	-12	NA	36868197	36875442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207_36872395_36874104_36874200_36874714_36874883_36875099
ENSMUSG00000006850.9_3	chr18	+	1635	9	ISM	ENSMUSG00000006850.9	ENSMUST00000007046.9	1823	12	78	2552	4	13	5prime_fragment	FALSE	canonical	3	53	junction_4	7.36545993132812	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAAGTGCACTTCTTGT	NA	False	NA	NA	False	AATAAA	-34	NA	36868198	36872898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207
ENSMUSG00000006850.9_4	chr18	+	1749	12	NIC	ENSMUSG00000006850.9	novel	1823	12	NA	NA	3	-4	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	17.804261724014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTACTTTGCCTCAGTG	NA	False	NA	49	True	AATAAA	-16	NA	36868197	36875446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_36868310_36868440_36868554_36870509_36870633_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207_36872395_36874104_36874200_36874714_36874883_36875099
ENSMUSG00000006906.11_0	chr6	-	2084	10	FSM	ENSMUSG00000006906.11	ENSMUST00000068054.9	2364	10	281	-1	-9	1	multi-exon	FALSE	canonical	3	22	junction_4	7.14920352984241	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGCTCCAGAGTGATTT	NA	False	NA	-16	True	AATAAA	-14	NA	83549430	83520204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83521019_83524212_83524313_83528925_83529039_83533256_83533395_83534418_83534544_83538656_83539024_83540804_83540901_83541162_83541239_83547284_83547502_83549392
ENSMUSG00000006920.15_0	chr11	-	4167	21	FSM	ENSMUSG00000006920.15	ENSMUST00000107285.8	4193	21	26	0	2	0	multi-exon	FALSE	canonical	3	124	junction_20	14.6399282785128	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGCAAGTTGTGTCCT	2644	False	NA	-8	True	AATAAA	-14	NA	101117250	101081941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101083826_101084044_101084130_101084551_101084633_101085293_101085376_101085711_101085808_101086344_101086524_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
ENSMUSG00000006920.15_21	chr11	-	2858	15	ISM	ENSMUSG00000006920.15	ENSMUST00000107285.8	4193	21	26	7044	2	478	5prime_fragment	FALSE	canonical	3	124	junction_14	16.7309135849706	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAAGATACATGGGT	2644	False	NA	NA	False	NA	NA	NA	101117250	101088985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
ENSMUSG00000006920.15_6	chr11	-	4172	21	NIC	ENSMUSG00000006920.15	novel	4193	21	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_19	32.178059295116	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGCAAGTTGTGTCCT	2644	False	NA	-8	True	AATAAA	-14	NA	101117250	101081941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_101083826_101084044_101084130_101084551_101084633_101085293_101085376_101085711_101085808_101086344_101086524_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108195_101109479_101109547_101117221
ENSMUSG00000006920.15_8	chr11	-	4139	20	ISM	ENSMUSG00000006920.15	ENSMUST00000107285.8	4193	21	7729	0	7705	0	3prime_fragment	FALSE	canonical	3	126	junction_14	14.0863974385853	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGCAAGTTGTGTCCT	NA	False	NA	-8	True	AATAAA	-14	NA	101109547	101081941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_101083826_101084044_101084130_101084551_101084633_101085293_101085376_101085711_101085808_101086344_101086524_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479
ENSMUSG00000006930.16_0	chr11	-	1456	1	ISM	ENSMUSG00000006930.16	ENSMUST00000138603.9	3316	12	7343	3	3120	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCCCTGTCTCAGTTGT	9350	False	NA	-5	True	AATAAA	-14	NA	100239611	100238155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100238200_100239600
ENSMUSG00000006930.16_1	chr11	-	3645	11	FSM	ENSMUSG00000006930.16	ENSMUST00000103124.11	2120	11	2	-1527	2	-5	multi-exon	FALSE	canonical	3	486	junction_1	44.9070150421958	1024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCTGCCCTGTCTCAGTT	2050	False	NA	-7	True	AATAAA	-12	NA	100246911	100238157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
ENSMUSG00000006930.16_6	chr11	-	3630	11	NIC	ENSMUSG00000006930.16	novel	2120	11	NA	NA	1	-3	intron_retention	FALSE	canonical	3	47	junction_1	163.083567535175	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCCCTGTCTCAGTTGT	2049	False	NA	-5	True	AATAAA	-14	NA	100246912	100238155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_100240428_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
ENSMUSG00000006931.16_0	chr11	-	1759	8	FSM	ENSMUSG00000006931.16	ENSMUST00000066489.13	2178	8	123	296	123	-296	multi-exon	FALSE	canonical	3	85	junction_5	9.9979589753844	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGGACACAGTTGACCT	NA	False	NA	-9	True	NA	NA	NA	100305539	100299577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100299971_100300188_100300334_100301939_100302024_100302554_100302701_100303526_100303656_100304434_100304607_100304752_100304906_100305002
ENSMUSG00000006931.16_1	chr11	-	1594	7	ISM	ENSMUSG00000006931.16	ENSMUST00000066489.13	2178	8	391	290	391	-290	intron_retention	FALSE	canonical	3	85	junction_5	10.1159939369957	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACAGTTGACCTAGTTTC	NA	False	NA	-3	True	NA	NA	NA	100305271	100299571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100299971_100300188_100300334_100301939_100302024_100302554_100302701_100303526_100303656_100304434_100304607_100304752
ENSMUSG00000006932.18_0	chr9	+	3536	15	FSM	ENSMUSG00000006932.18	ENSMUST00000007130.15	3623	15	83	4	-3	-3	multi-exon	FALSE	canonical	3	499	junction_2	74.0160283248135	1149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTTGTGTCATTTTGTT	NA	False	NA	23	True	ATTAAA	-12	NA	120762548	120789569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ENSMUSG00000006932.18_25	chr9	+	3497	15	NIC	ENSMUSG00000006932.18	novel	2222	14	NA	NA	27	-3	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	170.049332577944	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTTGTGTCATTTTGTT	NA	False	NA	23	True	ATTAAA	-12	NA	120762910	120789569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_120763028_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ENSMUSG00000006932.18_31	chr9	+	3237	13	ISM	ENSMUSG00000006932.18	ENSMUST00000007130.15	3623	15	17203	5	382	-4	3prime_fragment	FALSE	canonical	3	540	junction_2	68.5469729455649	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTGTGTCATTTTGT	NA	False	NA	22	True	ATTAAA	-11	NA	120779668	120789568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ENSMUSG00000006932.18_34	chr9	+	3030	12	ISM	ENSMUSG00000006932.18	ENSMUST00000163844.8	2222	14	733	-985	-135	-4	3prime_fragment	FALSE	canonical	3	540	junction_1	66.1126011669323	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTGTGTCATTTTGT	NA	False	NA	22	True	ATTAAA	-11	NA	120780019	120789568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ENSMUSG00000006932.18_35	chr9	+	2712	11	ISM	ENSMUSG00000006932.18	ENSMUST00000163844.8	2222	14	1170	-985	302	-4	3prime_fragment	FALSE	canonical	3	564	junction_2	60.8601675975346	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTGTGTCATTTTGT	NA	False	NA	22	True	ATTAAA	-11	NA	120780456	120789568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ENSMUSG00000006932.18_37	chr9	+	2532	10	ISM	ENSMUSG00000006932.18	ENSMUST00000163844.8	2222	14	1430	-985	562	-4	3prime_fragment	FALSE	canonical	3	564	junction_1	58.9232604094847	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTGTGTCATTTTGT	NA	False	NA	22	True	ATTAAA	-11	NA	120780716	120789568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ENSMUSG00000006932.18_42	chr9	+	2020	7	ISM	ENSMUSG00000006932.18	ENSMUST00000163844.8	2222	14	5234	-985	-2	-4	3prime_fragment	FALSE	canonical	3	646	junction_1	31.0237364323226	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTGTGTCATTTTGT	NA	False	NA	22	True	ATTAAA	-11	NA	120784520	120789568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ENSMUSG00000006932.18_53	chr9	+	844	1	FSM	ENSMUSG00000006932.18	ENSMUST00000215573.2	1292	1	445	3	445	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTGTGTCATTTTGTTT	NA	False	NA	24	True	ATTAAA	-13	NA	120788726	120789570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_120788700_120789600
ENSMUSG00000006941.6_0	chr9	+	1017	4	FSM	ENSMUSG00000006941.6	ENSMUST00000007139.6	1035	4	1	17	1	-17	multi-exon	FALSE	canonical	3	407	junction_2	26.9608770051883	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGCGCTGACCTAAGCC	NA	False	NA	17	True	AATAAA	-19	NA	120321557	120324379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_120321908_120323172_120323337_120323600_120323703_120323978
ENSMUSG00000006958.15_0	chr16	+	3612	23	FSM	ENSMUSG00000006958.15	ENSMUST00000007171.13	3275	23	-343	6	-343	-4	multi-exon	TRUE	canonical	1	3	junction_1	2.73332661424962	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTTGGGTTTGAGGTAG	2879	False	NA	NA	False	ATTAAA	-14	NA	20551533	20561128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20552046_20552280_20552385_20552756_20552887_20553022_20553152_20553236_20553337_20553435_20553524_20553866_20554009_20554120_20554250_20554330_20554414_20554495_20554644_20554786_20554894_20555013_20555134_20555658_20555816_20556091_20556313_20556943_20557058_20557302_20557567_20557653_20557748_20557860_20557915_20558156_20558261_20558703_20558807_20559939_20560095_20560245_20560346_20560674
ENSMUSG00000006958.15_7	chr16	+	3524	23	FSM	ENSMUSG00000006958.15	ENSMUST00000232646.2	3076	23	-193	-255	-191	-6	multi-exon	FALSE	canonical	0	0	junction_1	3.04952238503991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTTTGGGTTTGAGGT	3031	False	NA	NA	False	ATTAAA	-12	NA	20551685	20561126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20552046_20552214_20552385_20552756_20552887_20553022_20553152_20553236_20553337_20553435_20553524_20553866_20554009_20554120_20554250_20554330_20554414_20554495_20554644_20554786_20554894_20555013_20555134_20555658_20555816_20556091_20556313_20556943_20557058_20557302_20557567_20557653_20557748_20557860_20557915_20558156_20558261_20558703_20558807_20559939_20560095_20560245_20560346_20560674
ENSMUSG00000006998.17_1	chr16	+	2910	21	FSM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	49	2	-3	0	multi-exon	FALSE	canonical	3	2673	junction_8	225.447882003801	5884	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTCTCTGTCTATTTCCT	NA	False	NA	21	True	AATAAA	-14	NA	20470450	20482162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
ENSMUSG00000007021.6_0	chr17	-	1938	4	FSM	ENSMUSG00000007021.6	ENSMUST00000007236.5	1965	4	27	0	27	0	multi-exon	FALSE	canonical	3	8	junction_2	5.18544972870135	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAGGTCCCCTGGACTTA	NA	False	NA	-1	True	AATAAA	-23	NA	24908902	24904065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24905415_24905492_24905636_24906476_24906715_24908694
ENSMUSG00000007029.17_0	chr17	+	4034	30	FSM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	103	0	39	0	multi-exon	TRUE	canonical	0	0	junction_12	417.564149877336	2433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTCGCTCTTGTCTGTG	9577	False	NA	10	True	AATAAA	-11	NA	35220065	35235298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
ENSMUSG00000007029.17_147	chr17	+	3962	29	ISM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	354	0	24	0	3prime_fragment	FALSE	canonical	0	0	junction_11	424.60875598987	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTCGCTCTTGTCTGTG	10	True	NA	10	True	AATAAA	-11	NA	35220316	35235298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
ENSMUSG00000007034.16_0	chr17	+	2283	21	FSM	ENSMUSG00000007034.16	ENSMUST00000007249.15	2261	21	-30	8	-26	-8	multi-exon	TRUE	non_canonical	1	2	junction_1	7.56240702422185	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTTGATAAGTTTATGGC	1249	False	NA	NA	False	ATTAAA	-15	NA	35133415	35149324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35133497_35135622_35135672_35136293_35136368_35136492_35136572_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
ENSMUSG00000007034.16_1	chr17	+	2205	19	ISM	ENSMUSG00000007034.16	ENSMUST00000007249.15	2261	21	2801	3	-448	-3	3prime_fragment	FALSE	non_canonical	1	3	junction_2	7.25313895436714	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAAGTTTATGGCTTTAT	139	False	NA	NA	False	ATTAAA	-20	NA	35136246	35149329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35136368_35136492_35136572_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
ENSMUSG00000007034.16_3	chr17	+	2196	18	FSM	ENSMUSG00000007034.16	ENSMUST00000169230.2	2246	18	-32	82	-32	-2	multi-exon	FALSE	non_canonical	1	4	junction_1	7.17888098382546	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGTTTATGGCTTTATT	88	False	NA	NA	False	ATTAAA	-21	NA	35136662	35149330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35136853_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
ENSMUSG00000007035.16_6	chr17	-	2672	25	FSM	ENSMUSG00000007035.16	ENSMUST00000097338.11	2678	25	4	2	4	2	multi-exon	FALSE	canonical	1	1	junction_5	4.38728434101198	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTCCTTAGGTCAC	1793	False	NA	NA	False	AATAAA	-15	NA	35265698	35247582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35247829_35248171_35248246_35248628_35248767_35248853_35248998_35249176_35249252_35249584_35249735_35250123_35250251_35250329_35250520_35250654_35250743_35251316_35251398_35251735_35251846_35252198_35252272_35252565_35252695_35257381_35257445_35258176_35258316_35260445_35260492_35261073_35261157_35262704_35262741_35263000_35263111_35263292_35263415_35264089_35264153_35264269_35264351_35264905_35265030_35265206_35265364_35265675
ENSMUSG00000007036.16_0	chr17	+	1955	20	FSM	ENSMUSG00000007036.16	ENSMUST00000007251.14	1945	20	-14	4	-14	-4	multi-exon	FALSE	canonical	3	106	junction_5	22.1293102285439	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATCTGGCTGCTTATGAG	NA	False	NA	28	True	AATAAA	-15	NA	35308252	35321959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35308433_35309344_35309402_35309997_35310065_35310546_35310634_35313226_35313313_35315279_35315354_35315457_35315581_35317669_35317785_35317874_35317977_35319310_35319375_35319614_35319665_35319937_35320062_35320217_35320323_35320517_35320582_35320803_35320861_35320945_35321009_35321121_35321199_35321273_35321373_35321450_35321498_35321645
ENSMUSG00000007038.6_0	chr17	+	2932	5	FSM	ENSMUSG00000007038.6	ENSMUST00000173269.2	3619	5	48	639	48	-607	multi-exon	FALSE	canonical	3	117	junction_3	25.7001945517928	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAAGCGTTTGTGGAGT	8032	False	NA	6	True	NA	NA	NA	35150337	35154290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35150524_35150891_35151085_35151541_35153162_35153258_35153482_35153580
ENSMUSG00000007038.6_1	chr17	+	1769	6	FSM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	98	607	37	-607	multi-exon	FALSE	canonical	3	102	junction_3	26.914680009244	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAAGCGTTTGTGGAGT	8021	False	NA	6	True	NA	NA	NA	35150326	35154290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35150524_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
ENSMUSG00000007038.6_7	chr17	+	1750	3	ISM	ENSMUSG00000007038.6	ENSMUST00000173269.2	3619	5	2057	637	1508	-605	3prime_fragment	FALSE	canonical	3	117	junction_1	5.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGCGTTTGTGGAGTCT	NA	False	NA	8	True	NA	NA	NA	35152346	35154292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35153162_35153258_35153482_35153580
ENSMUSG00000007038.6_8	chr17	+	3024	4	NIC	ENSMUSG00000007038.6	novel	3619	5	NA	NA	53	-607	intron_retention	FALSE	canonical	3	122	junction_1	26.5120517668642	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAAGCGTTTGTGGAGT	8037	False	NA	6	True	NA	NA	NA	35150342	35154290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35150524_35150891_35151085_35151541_35153482_35153580
ENSMUSG00000007039.13_0	chr17	+	1278	7	FSM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	62	2	-4	-2	multi-exon	FALSE	canonical	3	393	junction_1	36.6488593122472	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAAGGGCTGTGACTGGT	NA	False	NA	11	True	AATAAA	-17	NA	35278072	35281065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
ENSMUSG00000007039.13_11	chr17	+	1232	7	NIC	ENSMUSG00000007039.13	novel	682	4	NA	NA	19	-2	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	154.377693408802	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAAGGGCTGTGACTGGT	NA	False	NA	11	True	AATAAA	-17	NA	35278810	35281065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35278941_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
ENSMUSG00000007039.13_14	chr17	+	1104	6	ISM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	1066	2	285	-2	3prime_fragment	FALSE	canonical	3	436	junction_2	25.772853935876	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAAGGGCTGTGACTGGT	NA	False	NA	11	True	AATAAA	-17	NA	35279076	35281065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
ENSMUSG00000007039.13_5	chr17	+	1252	7	FSM	ENSMUSG00000007039.13	ENSMUST00000174493.8	1254	7	-4	6	-4	-2	multi-exon	FALSE	canonical	3	26	junction_6	164.014989152415	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAAGGGCTGTGACTGGT	NA	False	NA	11	True	AATAAA	-17	NA	35278072	35281065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280576_35280766
ENSMUSG00000007041.10_1	chr17	+	1146	6	FSM	ENSMUSG00000007041.10	ENSMUST00000007257.10	1466	6	290	30	290	-30	multi-exon	TRUE	canonical	3	1084	junction_1	70.1524055182714	566	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAAATCTAGTGTTGTT	1966	False	NA	NA	False	AATAAA	-11	NA	35269231	35277695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35274202_35274385_35277305
ENSMUSG00000007050.18_0	chr17	+	841	5	FSM	ENSMUSG00000007050.18	ENSMUST00000114011.11	840	5	-4	3	-4	-1	multi-exon	FALSE	canonical	3	1192	junction_1	217.150869213089	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTCCTGGTTTGTCGTCT	-10	True	NA	23	True	AATAAA	-17	NA	35200851	35204864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35201062_35201595_35201664_35204084_35204116_35204224_35204285_35204392
ENSMUSG00000007050.18_10	chr17	+	865	5	FSM	ENSMUSG00000007050.18	ENSMUST00000007266.14	873	5	4	4	4	-2	multi-exon	FALSE	canonical	3	278	junction_1	596.250995806296	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTCCTGGTTTGTCGTC	247	False	NA	22	True	AATAAA	-16	NA	35201108	35204863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35201344_35201595_35201664_35204084_35204116_35204224_35204285_35204392
ENSMUSG00000007050.18_11	chr17	+	1120	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174860.8	691	4	-38	-391	2	-1	multi-exon	FALSE	canonical	3	1479	junction_1	117.83132954449	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTCCTGGTTTGTCGTCT	245	False	NA	23	True	AATAAA	-17	NA	35201106	35204864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35201664_35204084_35204116_35204224_35204285_35204392
ENSMUSG00000007050.18_5	chr17	+	760	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174241.8	521	4	-21	-218	10	0	multi-exon	FALSE	canonical	3	88	junction_1	766.950237412224	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTGGTTTGTCGTCTG	4	True	NA	24	True	AATAAA	-18	NA	35200865	35204865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35201062_35204084_35204116_35204224_35204285_35204392
ENSMUSG00000007080.15_3	chr5	+	7084	49	FSM	ENSMUSG00000007080.15	ENSMUST00000007296.12	7163	49	54	25	-17	-2	multi-exon	FALSE	canonical	2	122	junction_13	49.0675377809901	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTGTTTTATGCTTCCAC	NA	False	NA	23	True	AGTAAA	-14	NA	110434225	110485315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824_110438980_110441125_110441268_110441580_110441662_110442374_110442483_110442757_110442869_110443093_110443180_110443383_110443504_110444871_110445005_110445213_110445328_110445598_110445812_110446106_110446215_110446757_110446887_110446965_110447069_110447154_110447302_110447638_110447785_110449873_110450023_110451440_110451534_110451720_110451866_110454192_110454351_110454632_110454829_110456801_110457017_110459872_110459976_110460599_110460681_110460771_110460895_110465655_110465866_110466091_110466302_110466481_110466626_110471403_110471545_110471795_110471950_110472025_110472133_110472286_110472464_110472545_110472770_110472949_110473171_110473377_110473583_110475567_110475742_110477411_110477538_110478794_110478937_110480247_110480426_110482026_110482159_110482288_110482483_110483705_110483907_110484239_110484366_110484823_110484914_110484997
ENSMUSG00000007080.15_66	chr5	+	4790	30	ISM	ENSMUSG00000007080.15	ENSMUST00000007296.12	7163	49	13560	25	13489	-2	3prime_fragment	FALSE	canonical	3	140	junction_3	38.1110774075633	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTGTTTTATGCTTCCAC	819	False	NA	23	True	AGTAAA	-14	NA	110447731	110485315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110447785_110449873_110450023_110451440_110451534_110451720_110451866_110454192_110454351_110454632_110454829_110456801_110457017_110459872_110459976_110460599_110460681_110460771_110460895_110465655_110465866_110466091_110466302_110466481_110466626_110471403_110471545_110471795_110471950_110472025_110472133_110472286_110472464_110472545_110472770_110472949_110473171_110473377_110473583_110475567_110475742_110477411_110477538_110478794_110478937_110480247_110480426_110482026_110482159_110482288_110482483_110483705_110483907_110484239_110484366_110484823_110484914_110484997
ENSMUSG00000007080.15_79	chr5	+	3165	19	ISM	ENSMUSG00000007080.15	ENSMUST00000007296.12	7163	49	32016	28	1278	-5	3prime_fragment	FALSE	canonical	3	172	junction_4	31.1142855523327	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCGTCTGTTTTATGCTTC	NA	False	NA	20	True	AGTAAA	-11	NA	110466187	110485312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110466302_110466481_110466626_110471403_110471545_110471795_110471950_110472025_110472133_110472286_110472464_110472545_110472770_110472949_110473171_110473377_110473583_110475567_110475742_110477411_110477538_110478794_110478937_110480247_110480426_110482026_110482159_110482288_110482483_110483705_110483907_110484239_110484366_110484823_110484914_110484997
ENSMUSG00000007080.15_8	chr5	+	726	6	FSM	ENSMUSG00000007080.15	ENSMUST00000112482.2	747	6	19	2	-17	-2	multi-exon	FALSE	canonical	3	245	junction_5	26.0967430918113	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATTGTGTTCTGTTTTGT	NA	False	NA	7	True	AATAAA	-13	NA	110434225	110439099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824
ENSMUSG00000007097.15_4	chr1	-	3214	22	ISM	ENSMUSG00000007097.15	ENSMUST00000085913.11	6227	23	4392	2825	4392	9	3prime_fragment	FALSE	canonical	3	93	junction_19	22.8792551771319	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGTCCCGCTGTGAACCC	NA	False	NA	-5	True	AATAAA	-27	NA	172121239	172102100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106248_172106437_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759_172118964_172120893_172120954_172121138
ENSMUSG00000007097.15_6	chr1	-	3360	23	FSM	ENSMUSG00000007097.15	ENSMUST00000085913.11	6227	23	44	2823	44	11	multi-exon	FALSE	canonical	3	93	junction_19	23.4067518690196	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCCCGCTGTGAACCCTG	NA	False	NA	-3	True	AATAAA	-29	NA	172125587	172102098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106248_172106437_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759_172118964_172120893_172120954_172121138_172121244_172125447
ENSMUSG00000007097.15_8	chr1	-	3011	20	ISM	ENSMUSG00000007097.15	ENSMUST00000085913.11	6227	23	6750	2785	6750	49	3prime_fragment	FALSE	canonical	3	93	junction_19	23.1694947024	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTTCCCATCCCACTCT	NA	False	NA	-13	True	NA	NA	NA	172118881	172102060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106248_172106437_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759
ENSMUSG00000007122.12_1	chr1	-	815	3	ISM	ENSMUSG00000007122.12	ENSMUST00000170638.2	990	5	797	0	797	0	3prime_fragment	FALSE	canonical	3	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGTGTCTGTTGTTGAT	NA	False	NA	NA	False	AATAAA	-19	NA	172040725	172037461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_172038071_172039514_172039590_172040594
ENSMUSG00000007207.11_0	chr5	+	2218	10	FSM	ENSMUSG00000007207.11	ENSMUST00000150838.2	2167	10	-52	1	1	0	multi-exon	FALSE	canonical	3	9	junction_4	7.53428378140653	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGCCTCTGTTTGGAAC	NA	False	NA	14	True	AATAAA	-14	NA	135052361	135079953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135052465_135065979_135066058_135066329_135066430_135070090_135070166_135070784_135070859_135070962_135071072_135071446_135071521_135074450_135074589_135077764_135077959_135078680
ENSMUSG00000007207.11_11	chr5	+	2263	9	NIC	ENSMUSG00000007207.11	novel	2167	10	NA	NA	6	-1	intron_retention	FALSE	canonical	3	9	junction_4	7.8411972937811	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGAGCCTCTGTTTGGAA	NA	False	NA	13	True	AATAAA	-13	NA	135052419	135079952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_135052465_135065979_135066058_135066329_135066430_135070090_135070166_135070784_135071072_135071446_135071521_135074450_135074589_135077764_135077959_135078680
ENSMUSG00000007207.11_3	chr5	+	2107	9	ISM	ENSMUSG00000007207.11	ENSMUST00000150838.2	2167	10	13565	10	-386	-9	3prime_fragment	FALSE	canonical	3	9	junction_3	7.8411972937811	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATCTGTAGTGAGCCTCT	1741	False	NA	5	True	AATAAA	-5	NA	135065978	135079944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135066058_135066329_135066430_135070090_135070166_135070784_135070859_135070962_135071072_135071446_135071521_135074450_135074589_135077764_135077959_135078680
ENSMUSG00000007207.11_4	chr5	+	1624	4	NNC	ENSMUSG00000007207.11	novel	2114	7	NA	NA	1334	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	6.84754619472471	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGCCTCTGTTTGGAAC	7216	False	NA	14	True	AATAAA	-14	NA	135071453	135079953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_135071521_135074450_135074589_135077564_135077711_135078680
ENSMUSG00000007207.11_5	chr5	+	2395	3	ISM	ENSMUSG00000007207.11	ENSMUST00000156626.8	2114	7	1539	0	1333	0	intron_retention	FALSE	canonical	3	18	junction_1	7.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGCCTCTGTTTGGAAC	7215	False	NA	14	True	AATAAA	-14	NA	135071452	135079953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135071521_135074450_135074589_135077764
ENSMUSG00000007207.11_7	chr5	+	1669	4	ISM	ENSMUSG00000007207.11	ENSMUST00000156626.8	2114	7	1543	0	1337	0	3prime_fragment	FALSE	canonical	3	18	junction_1	6.12825877028341	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGCCTCTGTTTGGAAC	7219	False	NA	14	True	AATAAA	-14	NA	135071456	135079953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135071521_135074450_135074589_135077764_135077959_135078680
ENSMUSG00000007207.11_8	chr5	+	1375	2	ISM	ENSMUSG00000007207.11	ENSMUST00000156626.8	2114	7	7943	0	7737	0	3prime_fragment	FALSE	canonical	3	25	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGCCTCTGTTTGGAAC	NA	False	NA	14	True	AATAAA	-14	NA	135077856	135079953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135077959_135078680
ENSMUSG00000007207.11_9	chr5	+	974	1	ISM	ENSMUSG00000007207.11	ENSMUST00000005509.11	2162	10	26643	2	8859	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGAGCCTCTGTTTGGAA	NA	False	NA	13	True	AATAAA	-13	NA	135078978	135079952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135079000_135080000
ENSMUSG00000007216.7_0	chr6	+	2490	3	FSM	ENSMUSG00000007216.7	ENSMUST00000204095.3	4143	3	-28	1681	-28	-1681	multi-exon	FALSE	canonical	3	52	junction_2	4.5	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGTGTCACTGTTCTT	NA	False	NA	6	True	AATGAA	-14	NA	48578968	48598480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48579055_48590111_48590194_48596158
ENSMUSG00000007216.7_4	chr6	+	1860	1	ISM	ENSMUSG00000007216.7	ENSMUST00000204095.3	4143	3	17623	1682	6506	-1682	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATGGTGTCACTGTTCT	2406	False	NA	5	True	AATGAA	-13	NA	48596619	48598479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_48596600_48598500
ENSMUSG00000007279.15_1	chr7	-	4866	22	FSM	ENSMUSG00000007279.15	ENSMUST00000106729.8	3563	22	1	-1304	1	1290	multi-exon	FALSE	canonical	1	3	junction_18	1.71560795568113	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	109464885	109396592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_109398613_109399780_109399861_109403814_109403968_109405249_109405448_109407615_109407778_109408284_109408453_109423971_109424179_109424525_109424682_109428241_109428347_109430003_109430088_109430334_109430452_109430873_109430997_109432215_109432333_109436200_109436324_109437286_109437404_109442386_109442477_109443083_109443201_109446129_109446256_109451640_109451776_109456727_109456854_109463311_109463435_109464666
ENSMUSG00000007338.11_0	chr19	-	1461	4	FSM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	30	273	3	2	multi-exon	FALSE	canonical	3	907	junction_2	10.0332779621949	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGGTGTTCAGAACCTGC	NA	False	NA	-13	True	ATTAAA	-17	NA	6107785	6103924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6105013_6105105_6105231_6106958_6107110_6107688
ENSMUSG00000007338.11_6	chr19	-	1309	3	FSM	ENSMUSG00000007338.11	ENSMUST00000235520.2	1311	3	3	-1	3	1	multi-exon	FALSE	canonical	3	20	junction_2	445.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACGGTGTTCAGAACCTG	NA	False	NA	-14	True	ATTAAA	-16	NA	6107785	6103925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6105013_6105105_6105231_6107688
ENSMUSG00000007379.16_41	chr3	+	4995	19	FSM	ENSMUSG00000007379.16	ENSMUST00000172288.3	4979	19	-23	7	-23	0	multi-exon	FALSE	canonical	2	20	junction_1	61.6686686361723	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTCCCACAGATCT	4694	False	NA	NA	False	GATAAA	-9	NA	103034848	103077047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103034967_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
ENSMUSG00000007379.16_5	chr3	+	4933	19	NIC	ENSMUSG00000007379.16	novel	4879	18	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	3	218	junction_1	23.362415738442	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTCCCACAGATCT	NA	False	NA	NA	False	GATAAA	-9	NA	103009998	103077047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_103010055_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
ENSMUSG00000007379.16_50	chr3	+	4532	18	ISM	ENSMUSG00000007379.16	ENSMUST00000172288.3	4979	19	4142	7	4142	0	3prime_fragment	FALSE	canonical	3	248	junction_3	19.8124423525298	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTCCCACAGATCT	8859	False	NA	NA	False	GATAAA	-9	NA	103039013	103077047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
ENSMUSG00000007379.16_73	chr3	+	1510	1	ISM	ENSMUSG00000007379.16	ENSMUST00000173206.8	4879	18	65618	38	19058	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTCCCACAGATCT	1496	False	NA	NA	False	GATAAA	-9	NA	103075537	103077047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_103075500_103077000
ENSMUSG00000007411.17_19	chr12	+	3347	17	NIC	ENSMUSG00000007411.17	novel	2807	18	NA	NA	-1	-2	combination_of_known_splicesites	FALSE	canonical	3	38	junction_16	115.676272415738	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAACCTTGCACTGTCT	735	False	NA	NA	False	ATTAAA	-16	NA	111540955	111622650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111621703
ENSMUSG00000007411.17_2	chr12	+	3393	18	FSM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	-530	-56	-2	-2	multi-exon	FALSE	canonical	3	315	junction_16	68.4977205187368	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAACCTTGCACTGTCT	734	False	NA	NA	False	ATTAAA	-16	NA	111540954	111622650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
ENSMUSG00000007411.17_5	chr12	+	3366	17	FSM	ENSMUSG00000007411.17	ENSMUST00000084953.13	3365	17	-6	5	-2	-2	multi-exon	FALSE	canonical	3	31	junction_15	118.351634441608	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAACCTTGCACTGTCT	734	False	NA	NA	False	ATTAAA	-16	NA	111540954	111622650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111619823_111619869_111621703
ENSMUSG00000007411.17_6	chr12	+	3320	16	FSM	ENSMUSG00000007411.17	ENSMUST00000075281.8	3321	16	-1	2	-1	-2	multi-exon	FALSE	canonical	3	91	junction_15	105.235101875119	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAACCTTGCACTGTCT	735	False	NA	NA	False	ATTAAA	-16	NA	111540955	111622650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111621703
ENSMUSG00000007415.16_2	chr5	-	1569	5	FSM	ENSMUSG00000007415.16	ENSMUST00000007559.15	2545	5	-15	991	-15	338	multi-exon	FALSE	canonical	3	302	junction_1	62.6592969957372	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGGCAGATTCCAGGGA	NA	False	NA	0	True	AATAAA	-23	NA	3697949	3690951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_3691581_3693557_3693742_3694880_3694941_3696783_3696910_3697379
ENSMUSG00000007415.16_9	chr5	-	1399	4	FSM	ENSMUSG00000007415.16	ENSMUST00000119783.2	1278	4	-142	21	-14	-21	multi-exon	FALSE	canonical	3	421	junction_2	22.2910046630673	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAAGTTACTGCGTCC	NA	False	NA	-29	True	NA	NA	NA	3697948	3693097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_3693742_3694880_3694941_3696783_3696910_3697379
ENSMUSG00000007458.15_0	chr6	+	2204	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	279	32	0	-32	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	1745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACACAATAATTAAAAA	2943	False	NA	-26	True	AATATA	-13	NA	122285957	122294607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
ENSMUSG00000007458.15_4	chr6	+	3843	6	FSM	ENSMUSG00000007458.15	ENSMUST00000123093.2	2976	6	0	-867	0	-24	multi-exon	FALSE	canonical	3	1209	junction_4	60.7466871524695	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAATTAAAAAACAAAAAA	2943	False	NA	-18	True	AATATA	-21	NA	122285957	122294615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_122286126_122289192_122289373_122290217_122292126_122292262_122292394_122293008_122293136_122293286
ENSMUSG00000007476.19_1	chr2	+	4302	4	FSM	ENSMUSG00000007476.19	ENSMUST00000095078.3	4301	4	-2	1	-2	-1	multi-exon	FALSE	canonical	3	48	junction_3	22.6028513442196	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGGAGGTCTCCATG	NA	False	NA	6	True	AATAAA	-14	NA	30127731	30153801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30127818_30130580_30130690_30145179_30147345_30151859
ENSMUSG00000007476.19_4	chr2	+	1364	1	ISM	ENSMUSG00000007476.19	ENSMUST00000095078.3	4301	4	24705	0	24705	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGGAGGTCTCCATGC	5623	False	NA	7	True	AATAAA	-15	NA	30152438	30153802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30152400_30153800
ENSMUSG00000007480.6_0	chr18	+	2345	2	FSM	ENSMUSG00000007480.6	ENSMUST00000239469.2	1162	2	-122	-1061	-115	1061	multi-exon	FALSE	canonical	1	3	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	68470551	68473843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_68470797_68471743
ENSMUSG00000007480.6_1	chr18	+	3086	1	ISM	ENSMUSG00000007480.6	ENSMUST00000172148.4	3904	2	1750	15	1743	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGACTAAACTATACATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68472416	68475502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_68472400_68475500
ENSMUSG00000007564.16_0	chr17	+	2250	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	144	16	-32	-5	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	2212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACTTGGTTCTCTAGTC	NA	False	NA	23	True	AATAAA	-8	NA	21165716	21186162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
ENSMUSG00000007570.17_1	chr17	+	1913	9	NIC	ENSMUSG00000007570.17	novel	2025	10	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_3	35.076478942448	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGGCTTGGTGGCTCAG	347	False	NA	12	True	AATAAA	-14	NA	28532533	28545541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
ENSMUSG00000007570.17_10	chr17	+	2033	10	NIC	ENSMUSG00000007570.17	novel	2025	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_9	40.6086410557539	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGGCTTGGTGGCTCAG	351	False	NA	12	True	AATAAA	-14	NA	28532537	28545541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545067
ENSMUSG00000007570.17_15	chr17	+	1936	10	FSM	ENSMUSG00000007570.17	ENSMUST00000088007.12	1942	10	6	0	1	0	multi-exon	FALSE	canonical	3	32	junction_5	38.9558154266543	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGGCTTGGTGGCTCA	360	False	NA	11	True	AATAAA	-13	NA	28532546	28545540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537035_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
ENSMUSG00000007570.17_25	chr17	+	1957	9	NIC	ENSMUSG00000007570.17	novel	2025	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	49.7543967906355	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGGCTTGGTGGCTCA	360	False	NA	11	True	AATAAA	-13	NA	28532546	28545540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545067
ENSMUSG00000007570.17_4	chr17	+	1970	10	FSM	ENSMUSG00000007570.17	ENSMUST00000114803.9	2025	10	49	6	1	0	multi-exon	FALSE	canonical	3	100	junction_4	20.9655802580218	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGGCTTGGTGGCTCA	355	False	NA	11	True	AATAAA	-13	NA	28532541	28545540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
ENSMUSG00000007570.17_5	chr17	+	2070	11	NIC	ENSMUSG00000007570.17	novel	2025	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_9	55.0784894491488	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGGCTTGGTGGCTCAG	351	False	NA	12	True	AATAAA	-14	NA	28532537	28545541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28542544_28542640_28545125
ENSMUSG00000007570.17_9	chr17	+	1887	9	NIC	ENSMUSG00000007570.17	novel	1942	10	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_4	48.2720157026822	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGGCTTGGTGGCTCAG	344	False	NA	12	True	AATAAA	-14	NA	28532530	28545541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537035_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
ENSMUSG00000007589.10_0	chr14	-	167	1	ISM	ENSMUSG00000007589.10	ENSMUST00000226819.2	435	4	5213	7	5213	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55912319	55912152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55912200_55912300
ENSMUSG00000007589.10_15	chr14	-	1858	8	FSM	ENSMUSG00000007589.10	ENSMUST00000228264.2	3130	8	-20	1292	-2	1103	multi-exon	FALSE	canonical	3	280	junction_5	42.7532073030068	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTAGGTCATTCCTCC	NA	False	NA	-27	True	AATAAA	-13	NA	55919263	55916560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
ENSMUSG00000007589.10_3	chr14	-	1691	9	FSM	ENSMUSG00000007589.10	ENSMUST00000007733.8	2956	9	27	1238	-2	1103	multi-exon	FALSE	canonical	3	280	junction_6	40.8281459290034	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTAGGTCATTCCTCC	NA	False	NA	-27	True	AATAAA	-13	NA	55919250	55916560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
ENSMUSG00000007589.10_6	chr14	-	1587	8	NIC	ENSMUSG00000007589.10	novel	2956	9	NA	NA	-4	1105	combination_of_known_junctions	FALSE	canonical	2	15	junction_5	121.452434629986	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAGGTCATTCCTCCGA	NA	False	NA	-25	True	AATAAA	-15	NA	55919252	55916558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918456_55918547_55918681_55918769_55918846
ENSMUSG00000007594.11_0	chr8	+	3209	5	FSM	ENSMUSG00000007594.11	ENSMUST00000007738.11	3648	5	72	367	32	-367	multi-exon	FALSE	canonical	1	2	junction_2	1.08972473588517	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACAAGGCTGCCAGTCC	1161	False	NA	NA	False	AATAAA	-23	NA	70536178	70543145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70536214_70537069_70537191_70537431_70537795_70539457_70539782_70540779
ENSMUSG00000007603.10_2	chr17	+	2030	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	-6	1	-6	0	multi-exon	TRUE	canonical	3	220	junction_6	33.8230690505755	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTTTATTTTGTTGGT	9238	False	NA	15	True	AATAAA	-16	NA	57071771	57076840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ENSMUSG00000007603.10_6	chr17	+	1759	12	ISM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	845	4	-111	-3	3prime_fragment	FALSE	canonical	3	220	junction_5	35.3256397882088	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATTTCTTTTATTTTGTT	NA	False	NA	12	True	AATAAA	-13	NA	57072622	57076837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ENSMUSG00000007610.16_0	chr8	+	2050	9	FSM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	625	125	0	-125	multi-exon	FALSE	canonical	0	0	junction_4	23.9892554073694	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGTGTAGTAGCATGT	NA	False	NA	14	True	ATTAAA	-16	NA	71941371	71945919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
ENSMUSG00000007610.16_18	chr8	+	1636	7	ISM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	1375	128	19	-128	3prime_fragment	FALSE	canonical	0	0	junction_2	25.1925915035882	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTACTTGTGTAGTAGCA	NA	False	NA	11	True	ATTAAA	-13	NA	71942121	71945916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
ENSMUSG00000007610.16_2	chr8	+	1979	8	FSM	ENSMUSG00000007610.16	ENSMUST00000095259.10	2109	8	7	123	0	-123	multi-exon	TRUE	canonical	0	0	junction_4	25.5774135055258	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTGTAGTAGCATGTGG	NA	False	NA	16	True	ATTAAA	-18	NA	71941371	71945921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943709_71943854_71944068_71944235_71944720_71945000_71945182
ENSMUSG00000007610.16_22	chr8	+	1162	3	ISM	ENSMUSG00000007610.16	ENSMUST00000127741.2	2392	9	2695	124	1987	-124	3prime_fragment	FALSE	canonical	3	65	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTAGTAGCATGTG	NA	False	NA	15	True	ATTAAA	-17	NA	71944089	71945920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71944235_71944720_71945000_71945182
ENSMUSG00000007610.16_23	chr8	+	737	1	ISM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	4437	124	3081	-124	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTAGTAGCATGTG	NA	False	NA	15	True	ATTAAA	-17	NA	71945183	71945920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71945200_71945900
ENSMUSG00000007610.16_26	chr8	+	1389	8	ISM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	622	972	-3	-972	5prime_fragment	FALSE	canonical	0	0	junction_4	25.2303671905787	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTATCCCTCAGCCTCA	NA	False	NA	NA	False	NA	NA	NA	71941368	71945072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720
ENSMUSG00000007613.16_0	chr4	+	5716	9	FSM	ENSMUSG00000007613.16	ENSMUST00000044234.14	2861	9	-68	-2787	17	-11	multi-exon	FALSE	canonical	3	99	junction_2	41.6435769357052	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGTGTCAATGGCAACAT	-10	True	NA	22	True	AATAAA	-13	NA	47353238	47414920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_47353397_47383748_47383995_47393258_47393490_47396354_47396586_47402802_47402971_47403369_47403527_47405528_47405654_47406921_47407053_47410651
ENSMUSG00000007613.16_1	chr4	+	5728	9	FSM	ENSMUSG00000007613.16	ENSMUST00000007757.15	5756	9	17	11	17	-11	multi-exon	FALSE	canonical	3	114	junction_2	37.2623721064561	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGTGTCAATGGCAACAT	-10	True	NA	22	True	AATAAA	-13	NA	47353238	47414920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_47353397_47383748_47383995_47393246_47393490_47396354_47396586_47402802_47402971_47403369_47403527_47405528_47405654_47406921_47407053_47410651
ENSMUSG00000007613.16_25	chr4	+	3003	1	ISM	ENSMUSG00000007613.16	ENSMUST00000007757.15	5756	9	58696	11	25702	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGTGTCAATGGCAACAT	2093	False	NA	22	True	AATAAA	-13	NA	47411917	47414920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_47411900_47414900
ENSMUSG00000007617.19_0	chr13	+	4244	9	FSM	ENSMUSG00000007617.19	ENSMUST00000060490.11	2765	9	-1048	-431	9	431	multi-exon	FALSE	canonical	3	36	junction_8	6.10199762372946	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAGTGATCATTTAATGG	NA	False	NA	NA	False	AATAAA	-17	NA	93440618	93540729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447_93492588_93524031_93524189_93528198_93528310_93529535_93529617_93538548
ENSMUSG00000007617.19_1	chr13	+	4273	10	FSM	ENSMUSG00000007617.19	ENSMUST00000080127.12	3052	10	-681	-540	16	431	multi-exon	FALSE	canonical	0	0	junction_6	16.8244384273313	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAGTGATCATTTAATGG	NA	False	NA	NA	False	AATAAA	-17	NA	93440625	93540729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447_93492588_93522852_93522889_93524031_93524189_93528198_93528310_93529535_93529617_93538548
ENSMUSG00000007617.19_12	chr13	+	2301	1	ISM	ENSMUSG00000007617.19	ENSMUST00000102752.10	5713	5	53662	5	50123	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTTCTAGTATATTG	NA	False	NA	12	True	ATTAAA	-12	NA	93494664	93496965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_93494700_93497000
ENSMUSG00000007617.19_15	chr13	+	2325	1	ISM	ENSMUSG00000007617.19	ENSMUST00000079086.8	4287	9	94602	169	94602	-169	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTGTTCTCTGGAGAAT	NA	False	NA	5	True	AATACA	-17	NA	93539143	93541468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_93539100_93541500
ENSMUSG00000007617.19_3	chr13	+	6095	5	FSM	ENSMUSG00000007617.19	ENSMUST00000102752.10	5713	5	-389	7	4	-7	multi-exon	FALSE	canonical	3	39	junction_1	6.83282518435822	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATATTTTCTAGTATAT	NA	False	NA	10	True	ATTAAA	-10	NA	93440613	93496963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447
ENSMUSG00000007646.14_0	chr11	-	2007	9	FSM	ENSMUSG00000007646.14	ENSMUST00000067692.13	3944	9	27	1910	10	36	multi-exon	FALSE	canonical	3	130	junction_1	12.5940213990607	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTGTGTATATGTATCT	NA	False	NA	-2	True	AATAAA	-18	NA	87295322	87269380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
ENSMUSG00000007646.14_2	chr11	-	1506	7	ISM	ENSMUSG00000007646.14	ENSMUST00000007790.11	1632	9	3447	-542	2916	36	3prime_fragment	FALSE	canonical	3	130	junction_1	13.4618803375391	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTGTGTATATGTATCT	1721	False	NA	-2	True	AATAAA	-18	NA	87292333	87269380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215
ENSMUSG00000007646.14_5	chr11	-	2085	10	FSM	ENSMUSG00000007646.14	ENSMUST00000153073.8	2061	10	10	-34	10	34	multi-exon	FALSE	canonical	3	11	junction_2	58.9867112048589	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTGTGTGTATATGTAT	NA	False	NA	-4	True	AATAAA	-16	NA	87295322	87269382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_87270314_87271657_87271719_87279073_87279154_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
ENSMUSG00000007653.13_0	chr11	+	3819	9	ISM	ENSMUSG00000007653.13	ENSMUST00000007797.10	3989	10	1088	248	-434	-248	3prime_fragment	TRUE	canonical	1	1	junction_6	1.89983551919633	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATATAAATAAAAGTTCAT	NA	False	NA	NA	False	ATTAAA	-11	NA	42311671	42519607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_42312254_42312378_42312471_42313407_42313476_42378022_42378244_42420238_42420322_42482684_42482823_42484623_42484777_42488367_42488613_42517370
ENSMUSG00000007656.14_0	chr9	+	1116	4	FSM	ENSMUSG00000007656.14	ENSMUST00000168166.8	3944	4	76	2752	11	159	multi-exon	FALSE	canonical	3	3551	junction_1	1114.80232428096	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACCTTTTACAAATGTCT	NA	False	NA	3	True	AATACA	-11	NA	74944971	74964824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916
ENSMUSG00000007656.14_1	chr9	+	1122	4	FSM	ENSMUSG00000007656.14	ENSMUST00000170308.8	429	4	13	-706	11	161	multi-exon	FALSE	canonical	3	608	junction_1	2500.61556865949	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTTTACAAATGTCTGT	NA	False	NA	5	True	AATACA	-13	NA	74944971	74964826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_74945006_74945188_74945244_74959514_74959638_74963916
ENSMUSG00000007656.14_15	chr9	+	369	3	FSM	ENSMUSG00000007656.14	ENSMUST00000007800.8	4046	3	187	3490	-12	1	multi-exon	FALSE	canonical	3	5814	junction_2	96	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCCTCTACTGTCCTTT	NA	False	NA	27	True	ATTAAA	-14	NA	74945186	74964105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_74945244_74959514_74959638_74963916
ENSMUSG00000007656.14_20	chr9	+	3278	1	ISM	ENSMUSG00000007656.14	ENSMUST00000169492.8	3963	4	19415	7	4978	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAATATGCAGTTTTGT	NA	False	NA	13	True	AATAAA	-23	NA	74964310	74967588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_74964300_74967600
ENSMUSG00000007659.19_0	chr2	-	2384	3	FSM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	30	3	12	1	multi-exon	FALSE	canonical	3	148	junction_2	89.5	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCACAGCCTTGGCTCTG	NA	False	NA	-8	True	AATAAA	-19	NA	152673618	152622590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_152624203_152671346_152672023_152673522
ENSMUSG00000007659.19_1	chr2	-	2564	3	FSM	ENSMUSG00000007659.19	ENSMUST00000109820.5	2568	3	6	-2	6	-2	multi-exon	FALSE	canonical	3	144	junction_2	91.5	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACAGCCTTGGCTCTGC	NA	False	NA	-7	True	AATAAA	-20	NA	152672580	152622589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_152624203_152671346_152672023_152672305
ENSMUSG00000007659.19_2	chr2	-	2552	3	NIC	ENSMUSG00000007659.19	novel	2568	3	NA	NA	10	1	combination_of_known_junctions	FALSE	canonical	3	26	junction_2	150.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCACAGCCTTGGCTCTG	NA	False	NA	-8	True	AATAAA	-19	NA	152672551	152622590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_152624203_152671346_152672041_152672305
ENSMUSG00000007659.19_5	chr2	-	1149	1	ISM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	49908	4	46715	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCACAGCCTTGGCTCT	3594	False	NA	-9	True	AATAAA	-18	NA	152623740	152622591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_152622600_152623700
ENSMUSG00000007659.19_6	chr2	-	2402	3	NIC	ENSMUSG00000007659.19	novel	2417	3	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	148	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCACAGCCTTGGCTCT	NA	False	NA	-9	True	AATAAA	-18	NA	152673619	152622591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_152624203_152671346_152672041_152673522
ENSMUSG00000007659.19_7	chr2	-	2408	3	NIC	ENSMUSG00000007659.19	novel	2568	3	NA	NA	7	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	154.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACAGCCTTGGCTCTGC	NA	False	NA	-7	True	AATAAA	-20	NA	152672579	152622589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_152624203_152671346_152672023_152672460
ENSMUSG00000007659.19_9	chr2	-	2193	2	ISM	ENSMUSG00000007659.19	ENSMUST00000109820.5	2568	3	658	0	302	0	3prime_fragment	FALSE	canonical	3	327	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCACAGCCTTGGCTCT	NA	False	NA	-9	True	AATAAA	-18	NA	152671928	152622591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_152624203_152671346
ENSMUSG00000007670.11_0	chr17	-	3987	18	FSM	ENSMUSG00000007670.11	ENSMUST00000007814.10	3978	18	-16	7	-16	-7	multi-exon	TRUE	canonical	3	570	junction_17	70.4455420481926	1272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAACCTCCCTGTGTCCTG	NA	False	NA	-16	True	AATAAA	-8	NA	57338504	57328057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57329971_57330058_57330137_57330212_57330414_57330504_57330594_57330826_57330937_57331010_57331172_57331246_57331493_57331788_57331892_57331979_57332079_57332307_57332407_57332495_57332671_57332879_57332938_57333842_57333915_57334048_57334099_57334816_57334857_57334955_57334995_57336041_57336139_57338147
ENSMUSG00000007670.11_1	chr17	-	2675	7	ISM	ENSMUSG00000007670.11	ENSMUST00000007814.10	3978	18	7119	7	-198	-7	3prime_fragment	FALSE	canonical	3	654	junction_6	50.7720942600909	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAACCTCCCTGTGTCCTG	NA	False	NA	-16	True	AATAAA	-8	NA	57331369	57328057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_57329971_57330058_57330137_57330212_57330414_57330504_57330594_57330826_57330937_57331010_57331172_57331246
ENSMUSG00000007670.11_2	chr17	-	1378	1	ISM	ENSMUSG00000007670.11	ENSMUST00000007814.10	3978	18	9053	7	1625	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAACCTCCCTGTGTCCTG	NA	False	NA	-16	True	AATAAA	-8	NA	57329435	57328057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_57328100_57329400
ENSMUSG00000007721.7_0	chr8	-	907	5	FSM	ENSMUSG00000007721.7	ENSMUST00000007865.7	1356	5	448	1	-104	-1	multi-exon	FALSE	canonical	3	353	junction_4	97.9030132324843	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCATGTCTGTATGTGT	NA	False	NA	-6	True	AATAAA	-17	NA	71326131	71320871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71321290_71321380_71321496_71321576_71321752_71322548_71322719_71326102
ENSMUSG00000007721.7_1	chr8	-	880	4	ISM	ENSMUSG00000007721.7	ENSMUST00000007865.7	1356	5	3859	1	3307	-1	3prime_fragment	FALSE	canonical	3	521	junction_3	35.4902177445498	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCATGTCTGTATGTGT	NA	False	NA	-6	True	AATAAA	-17	NA	71322720	71320871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71321290_71321380_71321496_71321576_71321752_71322548
ENSMUSG00000007739.11_0	chr11	+	1919	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	121	444	1	185	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	5343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAACTTGTCATTTTAA	NA	False	NA	19	True	ATTAAA	-19	NA	22940639	22953336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
ENSMUSG00000007777.10_0	chr11	-	3247	1	Genic_Genomic	ENSMUSG00000007777.10	novel	NA	NA	NA	NA	22	1	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTGTATGAATGCTT	5206	False	NA	-11	True	ATTAAA	-15	NA	51579458	51576211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_51576200_51579500
ENSMUSG00000007777.10_1	chr11	-	792	2	FSM	ENSMUSG00000007777.10	ENSMUST00000007921.9	813	2	23	-2	23	2	multi-exon	FALSE	canonical	3	574	junction_1	0	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTGTATGAATGCTTT	5207	False	NA	-10	True	ATTAAA	-16	NA	51579457	51576210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51576920_51579374
ENSMUSG00000007783.11_3	chr7	-	3356	18	NIC	ENSMUSG00000007783.11	novel	2793	19	NA	NA	-28	0	intron_retention	FALSE	canonical	3	39	junction_12	18.3561460248554	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCACTGTGCTTTTCTGCG	2709	False	NA	-2	True	AATAAA	-20	NA	44624230	44608796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44611075_44611569_44611735_44612166_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481_44616557_44619828_44619967_44620041_44620144_44620659_44620832_44622433_44622574_44623150_44623305_44624018
ENSMUSG00000007783.11_5	chr7	-	2728	19	FSM	ENSMUSG00000007783.11	ENSMUST00000063761.8	2793	19	64	1	-9	-1	multi-exon	FALSE	canonical	3	39	junction_13	17.8819862459058	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCACTGTGCTTTTCTGC	2728	False	NA	-3	True	AATAAA	-19	NA	44624211	44608797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44610335_44610942_44611075_44611569_44611735_44612166_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481_44616557_44619828_44619967_44620041_44620144_44620659_44620832_44622433_44622574_44623150_44623305_44624018
ENSMUSG00000007812.17_0	chr5	+	4081	4	FSM	ENSMUSG00000007812.17	ENSMUST00000167316.8	4104	4	19	4	-13	-3	multi-exon	FALSE	canonical	3	281	junction_2	68.241401574769	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCGTAGACTCTTTGTTT	1318	False	NA	12	True	NA	NA	NA	145168551	145184108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145168642_145170250_145170413_145179729_145179835_145180384
ENSMUSG00000007812.17_2	chr5	+	4163	5	FSM	ENSMUSG00000007812.17	ENSMUST00000199322.5	4157	5	-11	5	-11	-5	multi-exon	FALSE	canonical	3	27	junction_3	175.330402383614	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTCGTAGACTCTTTGT	1320	False	NA	10	True	NA	NA	NA	145168553	145184106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145179729_145179835_145180384
ENSMUSG00000007812.17_21	chr5	+	2454	1	ISM	ENSMUSG00000007812.17	ENSMUST00000167316.8	4104	4	13122	4	13088	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCGTAGACTCTTTGTTT	NA	False	NA	12	True	NA	NA	NA	145181654	145184108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_145181700_145184100
ENSMUSG00000007812.17_3	chr5	+	1268	5	FSM	ENSMUSG00000007812.17	ENSMUST00000200039.5	1765	5	22	475	8	-1	multi-exon	FALSE	canonical	3	46	junction_3	167.334059593377	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGTGTACTTTTTGTA	1313	False	NA	NA	False	AATACA	-15	NA	145168546	145174657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145172546_145172674_145173859
ENSMUSG00000007815.14_0	chr9	+	1593	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	253	351	-57	-351	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	1447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCCCATTTTGTCACT	NA	False	NA	NA	False	AATAAA	-24	NA	108183580	108214782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
ENSMUSG00000007815.14_23	chr9	+	1040	1	ISM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	30762	4	6331	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTTCCTGTATTCTCTT	NA	False	NA	11	True	AATAAA	-11	NA	108214089	108215129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108214100_108215100
ENSMUSG00000007817.16_0	chr14	+	7321	24	FSM	ENSMUSG00000007817.16	ENSMUST00000162645.8	7482	24	19	142	19	-142	multi-exon	FALSE	canonical	3	6	junction_3	25.4924281726925	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTAGGTGTTCATGTGGT	340	False	NA	12	True	AATAAA	-23	NA	25459666	25667025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_25459981_25503078_25503184_25537168_25537249_25572443_25572553_25576554_25576669_25581991_25582098_25636296_25636442_25643981_25644097_25645079_25645298_25646082_25646282_25647140_25647432_25650091_25650275_25650948_25651030_25651642_25651818_25652270_25652413_25653746_25653958_25654922_25655029_25655520_25655682_25656446_25656515_25656747_25656817_25657169_25657415_25658530_25658698_25661690_25661946_25663363
ENSMUSG00000007817.16_1	chr14	+	5556	24	FSM	ENSMUSG00000007817.16	ENSMUST00000007961.15	5397	24	9	-168	9	168	multi-exon	FALSE	canonical	3	6	junction_3	26.0591881194375	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGGTTATAGCCTTTGC	373	False	NA	NA	False	NA	NA	NA	25459699	25665311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_25459981_25503078_25503184_25537168_25537249_25572443_25572553_25576554_25576669_25581991_25582098_25636296_25636442_25643981_25644097_25645079_25645298_25646082_25646282_25647158_25647432_25650091_25650275_25650948_25651030_25651642_25651818_25652270_25652413_25653746_25653958_25654922_25655029_25655520_25655682_25656446_25656515_25656747_25656817_25657169_25657415_25658530_25658698_25661690_25661946_25663363
ENSMUSG00000007817.16_12	chr14	+	6076	19	NIC	ENSMUSG00000007817.16	novel	359	3	NA	NA	-21	-694	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	15.4092324417683	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTATTGTTTTTATTT	-15	True	NA	NA	False	AATAGA	-32	NA	25607759	25666473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_25607895_25636296_25636442_25643981_25644097_25645079_25645298_25646082_25646282_25647140_25647432_25650091_25650275_25650948_25651030_25651642_25651818_25652270_25652413_25653746_25653958_25654922_25655029_25655520_25655682_25656446_25656515_25656747_25656817_25657169_25657415_25658530_25658698_25661690_25661946_25663363
ENSMUSG00000007817.16_16	chr14	+	5094	19	NIC	ENSMUSG00000007817.16	novel	930	5	NA	NA	91	217	combination_of_known_junctions	FALSE	canonical	3	18	junction_5	16.3386234819201	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAACCCGAGTCCTTTTT	405	False	NA	NA	False	TTTAAA	-17	NA	25608352	25665360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_25608637_25636296_25636442_25643981_25644097_25645079_25645298_25646082_25646282_25647158_25647432_25650091_25650275_25650948_25651030_25651642_25651818_25652270_25652413_25653746_25653958_25654922_25655029_25655520_25655682_25656446_25656515_25656747_25656817_25657169_25657415_25658530_25658698_25661690_25661946_25663363
ENSMUSG00000007817.16_17	chr14	+	6777	19	NIC	ENSMUSG00000007817.16	novel	930	5	NA	NA	83	-150	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	14.544949486181	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTGTATATTAGGTGTT	397	False	NA	4	True	AATAAA	-15	NA	25608344	25667017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_25608637_25636296_25636442_25643981_25644097_25645079_25645298_25646082_25646282_25647140_25647432_25650091_25650275_25650948_25651030_25651642_25651818_25652270_25652413_25653746_25653958_25654922_25655029_25655520_25655682_25656446_25656515_25656747_25656817_25657169_25657415_25658530_25658698_25661690_25661946_25663363
ENSMUSG00000007817.16_26	chr14	+	5926	14	ISM	ENSMUSG00000007817.16	ENSMUST00000162645.8	7482	24	187515	10	-10091	-10	3prime_fragment	FALSE	canonical	3	49	junction_1	9.62061396261961	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATGAAGGTTCTGGTG	2428	False	NA	NA	False	AATAAA	-6	NA	25647162	25667157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_25647432_25650091_25650275_25650948_25651030_25651642_25651818_25652270_25652413_25653746_25653958_25654922_25655029_25655520_25655682_25656446_25656515_25656747_25656817_25657169_25657415_25658530_25658698_25661690_25661946_25663363
ENSMUSG00000007817.16_33	chr14	+	3661	4	ISM	ENSMUSG00000007817.16	ENSMUST00000162645.8	7482	24	197634	698	28	-698	3prime_fragment	FALSE	canonical	3	52	junction_3	6.94422221866655	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGAATGTGTATTGTTTTT	357	False	NA	NA	False	AATAGA	-28	NA	25657281	25666469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_25657415_25658530_25658698_25661690_25661946_25663363
ENSMUSG00000007817.16_35	chr14	+	2882	1	ISM	ENSMUSG00000007817.16	ENSMUST00000162645.8	7482	24	204496	142	6890	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTAGGTGTTCATGTGGT	240	False	NA	12	True	AATAAA	-23	NA	25664143	25667025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_25664100_25667000
ENSMUSG00000007817.16_7	chr14	+	4978	19	NIC	ENSMUSG00000007817.16	novel	359	3	NA	NA	-96	175	combination_of_known_junctions	FALSE	canonical	3	18	junction_5	17.0973971017322	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATAGCCTTTGCTGGTGTT	47	False	NA	NA	False	NA	NA	NA	25607684	25665318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_25607895_25636296_25636442_25643981_25644097_25645079_25645298_25646082_25646282_25647158_25647432_25650091_25650275_25650948_25651030_25651642_25651818_25652270_25652413_25653746_25653958_25654922_25655029_25655520_25655682_25656446_25656515_25656747_25656817_25657169_25657415_25658530_25658698_25661690_25661946_25663363
ENSMUSG00000007827.11_10	chr6	-	1449	1	ISM	ENSMUSG00000007827.11	ENSMUST00000112830.3	6930	34	59469	1	20478	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATGAATCCTATATTTA	NA	False	NA	NA	False	AATAAA	-20	NA	118479718	118478269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_118478300_118479700
ENSMUSG00000007827.11_12	chr6	-	3838	11	ISM	ENSMUSG00000007827.11	ENSMUST00000112830.3	6930	34	38640	1	-351	-1	3prime_fragment	FALSE	canonical	3	53	junction_5	9.18966811152612	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATGAATCCTATATTTA	NA	False	NA	NA	False	AATAAA	-20	NA	118500547	118478269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301_118495373_118498801_118498955_118499899
ENSMUSG00000007827.11_13	chr6	-	7413	34	NNC	ENSMUSG00000007827.11	novel	6930	34	NA	NA	-38	-3	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_21	14.0305321010163	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATACATGAATCCTATATT	NA	False	NA	NA	False	AATAAA	-18	NA	118539225	118478271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301_118495373_118498801_118498955_118499899_118500857_118501905_118502044_118502693_118502878_118504616_118504831_118506394_118506537_118506803_118506838_118509162_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118517270_118517396_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
ENSMUSG00000007827.11_15	chr6	-	2449	5	ISM	ENSMUSG00000007827.11	ENSMUST00000112830.3	6930	34	53626	1	14635	-1	3prime_fragment	FALSE	canonical	3	65	junction_1	7.63216876123687	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATGAATCCTATATTTA	NA	False	NA	NA	False	AATAAA	-20	NA	118485561	118478269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450
ENSMUSG00000007827.11_16	chr6	-	6958	34	FSM	ENSMUSG00000007827.11	ENSMUST00000112830.3	6930	34	-31	3	-31	-3	multi-exon	FALSE	canonical	3	23	junction_21	12.4668891127898	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATACATGAATCCTATATT	NA	False	NA	NA	False	AATAAA	-18	NA	118539218	118478271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301_118495373_118498801_118498955_118499899_118500857_118501905_118502044_118502693_118502878_118504616_118504831_118506394_118506537_118506803_118506838_118509162_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118516837_118517411_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
ENSMUSG00000007827.11_7	chr6	-	6972	34	NNC	ENSMUSG00000007827.11	novel	6930	34	NA	NA	-30	-3	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_21	12.9133582362079	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATACATGAATCCTATATT	NA	False	NA	NA	False	AATAAA	-18	NA	118539217	118478271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301_118495373_118498801_118498955_118499899_118500857_118501905_118502044_118502693_118502878_118504616_118504831_118506394_118506537_118506803_118506838_118509162_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118516837_118517396_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
ENSMUSG00000007827.11_9	chr6	-	6794	33	NIC	ENSMUSG00000007827.11	novel	6930	34	NA	NA	-39	-1	combination_of_known_splicesites	TRUE	canonical	3	7	junction_31	15.2063925702318	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATGAATCCTATATTTA	NA	False	NA	NA	False	AATAAA	-20	NA	118539226	118478269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301_118495373_118498801_118498955_118499899_118500857_118501905_118502044_118502693_118502878_118504616_118504831_118506394_118506537_118506803_118506838_118509162_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118516837_118517411_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118536231_118536347_118538773
ENSMUSG00000007833.16_0	chr7	-	2582	17	FSM	ENSMUSG00000007833.16	ENSMUST00000209963.2	3537	17	23	932	16	-2	multi-exon	TRUE	canonical	3	349	junction_15	41.3256881370413	543	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTGAGGATGTGGGAA	9356	False	NA	-10	True	AATAAA	-18	NA	44803974	44791260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
ENSMUSG00000007836.7_0	chr13	-	1188	1	FSM	ENSMUSG00000007836.7	ENSMUST00000007980.7	2678	1	1488	2	1488	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGATTGAGTGAGAGTA	819	False	NA	-7	True	AATAAA	-13	NA	58274882	58273694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_58273700_58274900
ENSMUSG00000007836.7_2	chr13	-	1385	1	FSM	ENSMUSG00000007836.7	ENSMUST00000007980.7	2678	1	5	1288	5	-1288	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAAAAAATGTCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	58276365	58274980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_58275000_58276400
ENSMUSG00000007837.12_0	chr7	-	1366	8	NIC	ENSMUSG00000007837.12	novel	1623	8	NA	NA	1	-11	combination_of_known_junctions	FALSE	canonical	1	2	junction_5	14.3612289849854	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAACTGAGCCCCCTTT	NA	False	NA	-35	True	AATAAA	-33	NA	44711826	44703018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709840_44710164_44710317_44711011_44711076_44711801
ENSMUSG00000007837.12_1	chr7	-	5003	4	NIC	ENSMUSG00000007837.12	novel	922	7	NA	NA	-18	2	intron_retention	FALSE	canonical	3	33	junction_1	4.24264068711928	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAAAATGCAAAA	NA	False	NA	-51	True	AATAAA	-17	NA	44711148	44703034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44703622_44703942_44704072_44706166_44710317_44711011
ENSMUSG00000007837.12_2	chr7	-	1187	6	FSM	ENSMUSG00000007837.12	ENSMUST00000209920.2	876	6	7	-318	7	-1	multi-exon	FALSE	canonical	3	12	junction_4	10.7962956610126	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCCTTTCTGGGCGCAT	NA	False	NA	-25	True	AATAAA	-43	NA	44711122	44703008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44710164_44710317_44711011
ENSMUSG00000007837.12_4	chr7	-	1369	7	FSM	ENSMUSG00000007837.12	ENSMUST00000007981.9	1295	7	-72	-2	-18	2	multi-exon	FALSE	canonical	3	16	junction_5	9.01233722306385	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAAAATGCAAAA	NA	False	NA	-51	True	AATAAA	-17	NA	44711148	44703034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011
ENSMUSG00000007837.12_6	chr7	-	597	1	NIC	ENSMUSG00000007837.12	novel	1623	8	NA	NA	681	10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATGCAAAAGAACTGAG	NA	False	NA	-43	True	AATAAA	-25	NA	44703623	44703026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44703000_44703600
ENSMUSG00000007837.12_7	chr7	-	2481	3	ISM	ENSMUSG00000007837.12	ENSMUST00000007981.9	1295	7	3145	-2	3145	2	3prime_fragment	FALSE	canonical	3	33	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAAAATGCAAAA	NA	False	NA	-51	True	AATAAA	-17	NA	44707931	44703034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44703622_44703942_44704072_44706166
ENSMUSG00000007837.12_9	chr7	-	1337	8	FSM	ENSMUSG00000007837.12	ENSMUST00000210690.2	1623	8	275	11	1	-11	multi-exon	FALSE	canonical	3	9	junction_7	11.5121940673747	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAACTGAGCCCCCTTT	NA	False	NA	-35	True	AATAAA	-33	NA	44711826	44703018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011_44711076_44711801
ENSMUSG00000007850.17_1	chr11	+	2196	14	FSM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	22	7	-10	-7	multi-exon	FALSE	canonical	3	130	junction_1	115.462537790991	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTACACTCTGTCTGT	NA	False	NA	NA	False	AATAAA	-11	NA	50268567	50277347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ENSMUSG00000007850.17_11	chr11	+	2178	14	NIC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	15	-2	combination_of_known_junctions	TRUE	canonical	3	42	junction_11	142.282700508197	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACACTCTGTCTGTGCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	50268560	50277352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274718_50275470_50275564_50275967_50276018_50276603
ENSMUSG00000007850.17_37	chr11	+	2098	13	ISM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	608	7	26	-7	3prime_fragment	FALSE	canonical	3	224	junction_3	98.8039585351833	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTACACTCTGTCTGT	NA	False	NA	NA	False	AATAAA	-11	NA	50269153	50277347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ENSMUSG00000007850.17_50	chr11	+	1652	10	ISM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	3791	1	-1437	-1	3prime_fragment	FALSE	canonical	3	270	junction_1	67.2377392559187	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTCTGTCTGTGCTTTA	NA	False	NA	NA	False	AATAAA	-17	NA	50272336	50277353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ENSMUSG00000007850.17_59	chr11	+	2841	9	ISM	ENSMUSG00000007850.17	ENSMUST00000123371.8	4002	12	3491	-605	-1687	-1	3prime_fragment	FALSE	canonical	3	385	junction_6	42.5820898383346	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTCTGTCTGTGCTTTA	NA	False	NA	NA	False	AATAAA	-17	NA	50272086	50277353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ENSMUSG00000007850.17_78	chr11	+	641	1	ISM	ENSMUSG00000007850.17	ENSMUST00000109142.8	2427	15	8896	2	923	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTCTGTCTGTGCTTTA	NA	False	NA	NA	False	AATAAA	-17	NA	50276712	50277353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_50276700_50277400
ENSMUSG00000007867.10_0	chr12	+	1045	8	NIC	ENSMUSG00000007867.10	novel	783	9	NA	NA	-9	0	intron_retention	FALSE	canonical	3	179	junction_5	11.5015526902116	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATTTCTTCCATTCTGTC	NA	False	NA	6	True	AATAAA	-16	NA	86129327	86209232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_86129415_86131867_86131961_86158384_86158450_86185566_86185600_86186825_86186870_86207922_86208302_86208760_86208824_86208951
ENSMUSG00000007867.10_1	chr12	+	790	9	FSM	ENSMUSG00000007867.10	ENSMUST00000222821.2	783	9	-8	1	-8	0	multi-exon	FALSE	canonical	3	179	junction_5	10.7637992827812	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATTTCTTCCATTCTGTC	NA	False	NA	6	True	AATAAA	-16	NA	86129352	86209232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_86129415_86131867_86131961_86158384_86158450_86185566_86185600_86186825_86186870_86207922_86207996_86208225_86208302_86208760_86208824_86208951
ENSMUSG00000007867.10_8	chr12	+	668	4	ISM	ENSMUSG00000007867.10	ENSMUST00000220711.2	372	5	21022	-265	21022	-4	3prime_fragment	FALSE	canonical	3	187	junction_3	12.1928941054479	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCATTTCTTCCATTC	NA	False	NA	2	True	AATAAA	-12	NA	86207743	86209228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_86207996_86208225_86208302_86208760_86208824_86208951
ENSMUSG00000007872.4_0	chr4	+	943	3	FSM	ENSMUSG00000007872.4	ENSMUST00000008016.3	1278	3	327	8	-40	-8	multi-exon	FALSE	canonical	3	22	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTTGTGTATGACATCT	732	False	NA	3	True	AATAAA	-11	NA	135871134	135872695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_135871490_135871604_135871688_135872190
ENSMUSG00000007872.4_1	chr4	+	1533	1	NIC	ENSMUSG00000007872.4	novel	1278	3	NA	NA	-40	-36	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTTTGCATAATAAACC	732	False	NA	-25	True	ATTAAA	-16	NA	135871134	135872667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_135871100_135872700
ENSMUSG00000007880.17_0	chr4	-	2451	1	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	72149	4	39314	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGACTTTGTGAAGCTTT	8395	False	NA	-9	True	AATAAA	-17	NA	133408773	133406322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133406300_133408800
ENSMUSG00000007880.17_1	chr4	-	5482	13	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	59756	68	26921	-68	3prime_fragment	FALSE	canonical	3	115	junction_10	23.1209080463741	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGTATGAAATCTTTAT	NA	False	NA	-73	True	AATGAA	-9	NA	133421166	133406386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848_133414982_133416364_133416573_133418380_133418591_133420109_133420220_133420315_133420462_133421068
ENSMUSG00000007880.17_11	chr4	-	6174	16	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	57540	5	24705	-5	3prime_fragment	FALSE	canonical	3	84	junction_14	28.5224278224854	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGACTTTGTGAAGCTT	9616	False	NA	-10	True	AATAAA	-16	NA	133423382	133406323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848_133414982_133416364_133416573_133418380_133418591_133420109_133420220_133420315_133420462_133421068_133421382_133421973_133422142_133422882_133422973_133423226
ENSMUSG00000007880.17_13	chr4	-	4932	9	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	64398	6	31563	-6	3prime_fragment	FALSE	canonical	3	118	junction_8	20.9698444200237	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAGACTTTGTGAAGCT	644	False	NA	-11	True	AATAAA	-15	NA	133416524	133406324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848_133414982_133416364
ENSMUSG00000007880.17_14	chr4	-	5399	12	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	60509	5	27674	-5	3prime_fragment	FALSE	canonical	3	115	junction_10	22.6124371541324	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGACTTTGTGAAGCTT	NA	False	NA	-10	True	AATAAA	-16	NA	133420413	133406323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848_133414982_133416364_133416573_133418380_133418591_133420109_133420220_133420315
ENSMUSG00000007880.17_15	chr4	-	4273	5	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	67097	6	34262	-6	3prime_fragment	FALSE	canonical	3	132	junction_4	19.1490861400747	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAGACTTTGTGAAGCT	3343	False	NA	-11	True	AATAAA	-15	NA	133413825	133406324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714
ENSMUSG00000007880.17_16	chr4	-	4384	6	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	66906	3	34071	-3	3prime_fragment	FALSE	canonical	3	132	junction_4	17.7606306194347	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTTTGTGAAGCTTTT	3152	False	NA	-8	True	AATAAA	-18	NA	133414016	133406321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950
ENSMUSG00000007880.17_17	chr4	-	5086	10	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	62438	4	29603	-4	3prime_fragment	FALSE	canonical	3	118	junction_8	20.5107620049742	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGACTTTGTGAAGCTTT	NA	False	NA	-9	True	AATAAA	-17	NA	133418484	133406322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848_133414982_133416364_133416573_133418380
ENSMUSG00000007880.17_18	chr4	-	5270	11	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	60736	3	27901	-3	3prime_fragment	FALSE	canonical	3	115	junction_10	22.1740839720607	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTTTGTGAAGCTTTT	NA	False	NA	-8	True	AATAAA	-18	NA	133420186	133406321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848_133414982_133416364_133416573_133418380_133418591_133420109
ENSMUSG00000007880.17_3	chr4	-	3135	2	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	69087	3	36252	-3	3prime_fragment	FALSE	canonical	3	182	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTTTGTGAAGCTTTT	5333	False	NA	-8	True	AATAAA	-18	NA	133411835	133406321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133409367_133411745
ENSMUSG00000007880.17_4	chr4	-	8189	20	FSM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	-7	5	-7	-5	multi-exon	FALSE	canonical	3	56	junction_19	32.8919156684966	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGACTTTGTGAAGCTT	NA	False	NA	-10	True	AATAAA	-16	NA	133480929	133406323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848_133414982_133416364_133416573_133418380_133418591_133420109_133420220_133420315_133420462_133421068_133421382_133421973_133422142_133422882_133422973_133423226_133423468_133446847_133446965_133447860_133448311_133450149_133450363_133479779
ENSMUSG00000007880.17_7	chr4	-	7116	20	NIC	ENSMUSG00000007880.17	novel	8187	20	NA	NA	-6	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	40.3589846927467	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTTTGTGAAGCTTTT	NA	False	NA	-8	True	AATAAA	-18	NA	133481299	133406321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848_133414982_133416364_133416573_133418380_133418591_133420109_133420220_133420315_133420462_133421068_133421382_133421973_133422142_133422882_133422973_133423226_133423468_133446847_133446965_133447860_133448311_133450149_133450363_133481224
ENSMUSG00000007880.17_8	chr4	-	3644	3	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	68270	3	35435	-3	3prime_fragment	FALSE	canonical	3	162	junction_2	10	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTTTGTGAAGCTTTT	4516	False	NA	-8	True	AATAAA	-18	NA	133412652	133406321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133409367_133411745_133411877_133412184
ENSMUSG00000007880.17_9	chr4	-	4709	8	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	66007	3	33172	-3	3prime_fragment	FALSE	canonical	3	132	junction_4	17.5963818173289	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTTTGTGAAGCTTTT	2253	False	NA	-8	True	AATAAA	-18	NA	133414915	133406321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848
ENSMUSG00000007888.16_0	chr8	+	1669	9	FSM	ENSMUSG00000007888.16	ENSMUST00000008032.14	1644	9	-33	8	-33	-8	multi-exon	FALSE	canonical	0	0	junction_1	5.09901951359278	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGATGGCCAGTGTGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	70945774	70956723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70946051_70951246_70951529_70951742_70951873_70951979_70952150_70953533_70953692_70953759_70953929_70955954_70956143_70956246_70956290_70956470
ENSMUSG00000007888.16_3	chr8	+	620	4	ISM	ENSMUSG00000007888.16	ENSMUST00000008032.14	1644	9	7981	12	6	-12	3prime_fragment	FALSE	canonical	2	10	junction_2	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCCCGATGGCCAGTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	70953788	70956719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70953929_70955954_70956143_70956246_70956290_70956470
ENSMUSG00000007891.17_0	chr7	-	1962	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	159	6	-22	0	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	2930	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTATTGGTGTGCTCTG	8843	False	NA	-8	True	AATAAA	-17	NA	141941616	141929653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
ENSMUSG00000007892.9_2	chr9	-	189	1	ISM	ENSMUSG00000007892.9	ENSMUST00000008036.9	499	3	1070	0	1070	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61820754	61820565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_61820600_61820800
ENSMUSG00000007892.9_3	chr9	-	496	3	FSM	ENSMUSG00000007892.9	ENSMUST00000008036.9	499	3	3	0	3	0	multi-exon	FALSE	canonical	3	11557	junction_2	345.5	2057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821821	61820565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_61820804_61821169_61821245_61821638
ENSMUSG00000007944.9_0	chr7	+	901	3	FSM	ENSMUSG00000007944.9	ENSMUST00000008088.9	2052	3	12	1139	12	-1139	multi-exon	FALSE	canonical	3	10	junction_1	3	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTCCTTTGTGTGGTCTT	NA	False	NA	10	True	NA	NA	NA	27353351	27355632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27353773_27354336_27354520_27355335
ENSMUSG00000007946.12_0	chr7	+	1607	3	FSM	ENSMUSG00000007946.12	ENSMUST00000008090.11	1609	3	-19	21	-19	-21	multi-exon	FALSE	canonical	0	0	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTAATTTATTGAAGACA	6565	False	NA	NA	False	NA	NA	NA	101467500	101471912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101467922_101469987_101470176_101470914
ENSMUSG00000007950.10_0	chr8	-	1949	5	FSM	ENSMUSG00000007950.10	ENSMUST00000008094.10	1978	5	9	20	9	-20	multi-exon	FALSE	canonical	3	51	junction_3	6.41774882649672	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAGACAATCCAAA	NA	False	NA	-26	True	NA	NA	NA	71916290	71909368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71910022_71910681_71910899_71911021_71911193_71913889_71914617_71916109
ENSMUSG00000007950.10_1	chr8	-	1195	4	NIC	ENSMUSG00000007950.10	novel	1978	5	NA	NA	0	-23	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	26.7124606795322	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAAAAAGACAATCC	NA	False	NA	-29	True	NA	NA	NA	71916266	71909371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71910022_71910681_71910899_71911021_71911193_71916109
ENSMUSG00000007950.10_3	chr8	-	1867	2	FSM	ENSMUSG00000007950.10	ENSMUST00000212503.2	2626	2	-36	795	-3	-795	multi-exon	FALSE	canonical	3	66	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATTTAAAATTAATTTT	NA	False	NA	NA	False	AATAAA	-20	NA	71916302	71912942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71914617_71916109
ENSMUSG00000007950.10_4	chr8	-	3450	4	ISM	ENSMUSG00000007950.10	ENSMUST00000008094.10	1978	5	-2	23	-2	-23	intron_retention	FALSE	canonical	3	51	junction_3	4.96655480858378	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAAAAAGACAATCC	NA	False	NA	-29	True	NA	NA	NA	71916301	71909371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71910022_71910681_71910899_71911021_71911193_71913889
ENSMUSG00000007950.10_5	chr8	-	2603	4	NIC	ENSMUSG00000007950.10	novel	1978	5	NA	NA	7	-28	intron_retention	FALSE	canonical	3	51	junction_2	6.84754619472471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAATAATAATAAAAAAGAC	NA	False	NA	-34	True	NA	NA	NA	71916292	71909376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71910899_71911021_71911193_71913889_71914617_71916109
ENSMUSG00000007987.13_0	chr5	+	900	5	FSM	ENSMUSG00000007987.13	ENSMUST00000200157.5	3071	5	10	2161	10	62	multi-exon	FALSE	canonical	3	57	junction_4	11.0989864402116	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCTAGCACTGTGTTTT	4065	False	NA	5	True	NA	NA	NA	136937013	136942097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542_136940746_136941678
ENSMUSG00000007987.13_1	chr5	+	2988	6	NNC	ENSMUSG00000007987.13	novel	3071	5	NA	NA	17	-7	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	28.8610464120759	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCACCTCTATCTCGTC	4072	False	NA	NA	False	AATAAA	-16	NA	136937020	136944251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542_136940746_136941678_136944072_136944130
ENSMUSG00000007987.13_3	chr5	+	718	4	FSM	ENSMUSG00000007987.13	ENSMUST00000200153.5	670	4	-35	-13	17	13	multi-exon	FALSE	canonical	3	69	junction_3	7.34846922834953	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATAGAGGTATGAATTAG	4072	False	NA	NA	False	NA	NA	NA	136937020	136940989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542
ENSMUSG00000007989.8_0	chr14	-	3711	1	ISM	ENSMUSG00000007989.8	ENSMUST00000131309.3	12734	7	66303	1	31936	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGTCTGTCATTAGCA	NA	False	NA	-13	True	AATAAA	-15	NA	65433609	65429898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_65429900_65433600
ENSMUSG00000007989.8_1	chr14	-	2813	7	FSM	ENSMUSG00000007989.8	ENSMUST00000131309.3	12734	7	32	9889	32	7381	multi-exon	FALSE	canonical	2	2	junction_3	9.80504405338848	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAATTTCTATGCAAG	NA	False	NA	NA	False	AATAAA	-17	NA	65499880	65439786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_65440382_65447140_65447375_65449523_65449673_65472362_65473381_65477166_65477364_65490392_65490913_65499780
ENSMUSG00000007989.8_2	chr14	-	1493	4	ISM	ENSMUSG00000007989.8	ENSMUST00000131309.3	12734	7	35	42804	35	-25534	5prime_fragment	FALSE	canonical	3	18	junction_2	4.49691252107735	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTAGTGGCGTGTGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	65499877	65472701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_65473381_65477166_65477364_65490392_65490913_65499780
ENSMUSG00000008028.16_2	chr7	-	1060	5	NIC	ENSMUSG00000008028.16	novel	913	6	NA	NA	19	-4	intron_retention	FALSE	canonical	2	14	junction_4	7.66485485837795	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCCATTTCTCTCGGCA	NA	False	NA	NA	False	TATAAA	-15	NA	44024435	44009470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44009806_44010473_44010608_44012075_44012440_44023746_44023949_44024410
ENSMUSG00000008028.16_3	chr7	-	1452	4	FSM	ENSMUSG00000008028.16	ENSMUST00000137946.2	973	4	-427	-52	89	-4	multi-exon	FALSE	canonical	3	16	junction_3	6.79869268479038	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCCATTTCTCTCGGCA	NA	False	NA	NA	False	TATAAA	-15	NA	44024365	44009470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44009806_44010473_44010608_44012075_44012440_44023746
ENSMUSG00000008028.16_4	chr7	-	426	2	ISM	ENSMUSG00000008028.16	ENSMUST00000150886.2	820	5	12460	-190	12460	-4	3prime_fragment	FALSE	canonical	3	32	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCCATTTCTCTCGGCA	5553	False	NA	NA	False	TATAAA	-15	NA	44010564	44009470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44009806_44010473
ENSMUSG00000008035.13_0	chrX	+	1745	2	FSM	ENSMUSG00000008035.13	ENSMUST00000144356.8	447	2	8	-1306	8	0	multi-exon	FALSE	canonical	3	13	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTGGACAAGTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	10581265	10585929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_10581307_10584225
ENSMUSG00000008035.13_2	chrX	+	1515	1	Genic_Genomic	ENSMUSG00000008035.13	novel	NA	NA	NA	NA	711	3	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGGACAAGTGTGTGT	2268	False	NA	NA	False	AATAAA	-18	NA	10584417	10585932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_10584400_10585900
ENSMUSG00000008035.13_4	chrX	+	1822	2	FSM	ENSMUSG00000008035.13	ENSMUST00000008179.7	2019	2	197	0	119	0	multi-exon	FALSE	canonical	3	265	junction_1	0	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTGGACAAGTGTG	1676	False	NA	NA	False	AATAAA	-15	NA	10583825	10585929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_10583944_10584225
ENSMUSG00000008035.13_6	chrX	+	1743	2	NIC	ENSMUSG00000008035.13	novel	431	2	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGGACAAGTGTGTGT	1557	False	NA	NA	False	AATAAA	-18	NA	10583706	10585932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_10583740_10584222
ENSMUSG00000008035.13_7	chrX	+	1824	2	FSM	ENSMUSG00000008035.13	ENSMUST00000115524.8	2022	2	198	0	120	0	multi-exon	FALSE	canonical	3	75	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTGGACAAGTGTG	1677	False	NA	NA	False	AATAAA	-15	NA	10583826	10585929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_10583944_10584222
ENSMUSG00000008036.12_0	chr7	+	787	5	FSM	ENSMUSG00000008036.12	ENSMUST00000086112.8	836	5	47	2	13	-2	multi-exon	FALSE	canonical	3	580	junction_2	14.0423466699836	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTGTCTGAGCCCTC	NA	False	NA	17	True	AATAAA	-17	NA	16472381	16483217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16472464_16477143_16477294_16481185_16481300_16482613_16482674_16482836
ENSMUSG00000008036.12_2	chr7	+	703	4	ISM	ENSMUSG00000008036.12	ENSMUST00000086112.8	836	5	4808	5	-3546	-5	3prime_fragment	FALSE	canonical	3	580	junction_1	15.7550697307953	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCCTGGCTGTCTGAGCC	NA	False	NA	14	True	AATAAA	-14	NA	16477142	16483214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_16477294_16481185_16481300_16482613_16482674_16482836
ENSMUSG00000008090.15_0	chr5	+	2624	7	FSM	ENSMUSG00000008090.15	ENSMUST00000013633.12	2329	7	-267	-28	5	0	multi-exon	FALSE	canonical	3	66	junction_1	17.0171482138851	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAATTGCCTCCTT	NA	False	NA	4	True	NA	NA	NA	108842100	108854790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_108842399_108842760_108842985_108851151_108851425_108852532_108852614_108852720_108853006_108853084_108853439_108853681
ENSMUSG00000008090.15_1	chr5	+	2478	7	NIC	ENSMUSG00000008090.15	novel	2329	7	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	30.2402417685809	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAATTGCCTCCTT	NA	False	NA	4	True	NA	NA	NA	108842103	108854790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_108842399_108842903_108842985_108851151_108851425_108852532_108852614_108852720_108853006_108853084_108853439_108853681
ENSMUSG00000008090.15_15	chr5	+	2306	6	ISM	ENSMUSG00000008090.15	ENSMUST00000013633.12	2329	7	420	-35	420	7	3prime_fragment	FALSE	canonical	3	93	junction_1	8.84081444212014	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTCCTTTTCTCAT	NA	False	NA	11	True	NA	NA	NA	108842787	108854797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_108842985_108851151_108851425_108852532_108852614_108852720_108853006_108853084_108853439_108853681
ENSMUSG00000008090.15_3	chr5	+	2403	6	NIC	ENSMUSG00000008090.15	novel	2329	7	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	43.0041858427758	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAATTGCCTCCTT	NA	False	NA	4	True	NA	NA	NA	108842097	108854790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_108842399_108851151_108851425_108852532_108852614_108852720_108853006_108853084_108853439_108853681
ENSMUSG00000008090.15_6	chr5	+	2348	6	FSM	ENSMUSG00000008090.15	ENSMUST00000112560.8	2318	6	-30	0	8	0	multi-exon	FALSE	canonical	2	5	junction_2	42.3820716813135	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAATTGCCTCCTT	NA	False	NA	4	True	NA	NA	NA	108842103	108854790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_108842399_108842760_108842985_108852532_108852614_108852720_108853006_108853084_108853439_108853681
ENSMUSG00000008129.15_0	chr8	+	2421	8	NIC	ENSMUSG00000008129.15	novel	2366	9	NA	NA	29	-1	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	5.99659767480439	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCTGATCTGTAGCTG	1912	False	NA	3	True	AATAAA	-13	NA	84874682	84899217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_84875028_84886073_84886237_84887841_84887921_84888928_84889034_84893209_84894320_84896983_84897082_84898446_84898540_84898789
ENSMUSG00000008129.15_2	chr8	+	2386	8	FSM	ENSMUSG00000008129.15	ENSMUST00000093375.5	2167	8	-220	1	7	-1	multi-exon	TRUE	canonical	2	6	junction_4	5.92125193601792	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCTGATCTGTAGCTG	1890	False	NA	3	True	AATAAA	-13	NA	84874660	84899217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84875028_84875466_84875515_84886073_84886237_84887841_84887921_84893209_84894320_84896983_84897082_84898446_84898540_84898789
ENSMUSG00000008129.15_3	chr8	+	2462	9	FSM	ENSMUSG00000008129.15	ENSMUST00000118856.8	2366	9	-100	4	34	-3	multi-exon	FALSE	canonical	2	9	junction_1	4.49826355386165	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGCCTCTGATCTGTAGC	1917	False	NA	1	True	AATAAA	-11	NA	84874687	84899215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84875028_84875466_84875515_84886073_84886237_84887841_84887921_84888928_84889034_84893209_84894320_84896983_84897082_84898446_84898540_84898789
ENSMUSG00000008129.15_5	chr8	+	2339	7	NIC	ENSMUSG00000008129.15	novel	2167	8	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	7.34279692397023	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCTGATCTGTAGCTGT	1890	False	NA	4	True	AATAAA	-14	NA	84874660	84899218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_84875028_84886073_84886237_84887841_84887921_84893209_84894320_84896983_84897082_84898446_84898540_84898789
ENSMUSG00000008136.15_0	chr1	-	1532	6	FSM	ENSMUSG00000008136.15	ENSMUST00000008280.14	1563	6	27	4	27	-4	multi-exon	FALSE	canonical	1	1	junction_1	0.4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCACAGTGTGTGGACTAA	NA	False	NA	-6	True	AATAAA	-26	NA	43203094	43162237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_43162826_43167403_43167591_43170811_43170982_43180857_43181033_43192235_43192415_43202861
ENSMUSG00000008140.19_0	chr7	-	1869	7	NIC	ENSMUSG00000008140.19	novel	1662	8	NA	NA	-10	-17	intron_retention	FALSE	canonical	3	278	junction_1	282.765509447905	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACTCTTCAGCTCACTT	NA	False	NA	-18	True	ATTAAA	-14	NA	44145862	44139551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUSG00000008140.19_1	chr7	-	1592	7	FSM	ENSMUSG00000008140.19	ENSMUST00000239015.2	1855	7	76	187	-9	-14	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTTCAGCTCACTTCCT	NA	False	NA	-15	True	ATTAAA	-17	NA	44145861	44139548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUSG00000008140.19_2	chr7	-	1681	8	FSM	ENSMUSG00000008140.19	ENSMUST00000118515.9	1662	8	-34	15	-12	-15	multi-exon	FALSE	canonical	3	258	junction_1	346.110162950988	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTCTTCAGCTCACTTCC	NA	False	NA	-16	True	ATTAAA	-16	NA	44145864	44139549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44140395_44140586_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUSG00000008153.13_1	chr6	-	2406	8	ISM	ENSMUSG00000008153.13	ENSMUST00000112523.8	3703	18	12554	17	-18	-17	3prime_fragment	FALSE	canonical	3	22	junction_7	10.5211157940126	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAACTAGAAAAAAGTT	9235	False	NA	NA	False	NA	NA	NA	124427149	124407734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124408692_124408916_124409120_124413776_124413913_124414333_124414480_124415228_124415400_124415717_124415945_124426448_124426598_124426732
ENSMUSG00000008153.13_10	chr6	-	1101	2	ISM	ENSMUSG00000008153.13	ENSMUST00000239139.2	1687	4	1408	186	1408	-8	3prime_fragment	FALSE	canonical	3	41	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAAAGTTCTTGCTTGC	6006	False	NA	NA	False	AATAAA	-7	NA	124409051	124407725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124408692_124408916
ENSMUSG00000008153.13_2	chr6	-	3956	18	FSM	ENSMUSG00000008153.13	ENSMUST00000008297.5	4014	18	50	8	50	-8	multi-exon	FALSE	canonical	2	7	junction_17	12.5334155436701	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAAAGTTCTTGCTTGC	8490	False	NA	NA	False	AATAAA	-7	NA	124441703	124407725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124408692_124408916_124409120_124413776_124413913_124414333_124414480_124415228_124415400_124415717_124415945_124426448_124426598_124426732_124426891_124427664_124427719_124428264_124428428_124433835_124433949_124434814_124435097_124435502_124435689_124436116_124436267_124436724_124436934_124438490_124438687_124439068_124439192_124441379
ENSMUSG00000008153.13_3	chr6	-	2116	7	ISM	ENSMUSG00000008153.13	ENSMUST00000112523.8	3703	18	12984	12	412	-12	3prime_fragment	FALSE	canonical	3	25	junction_5	9.58152156786987	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTAGAAAAAAGTTCTTGC	9665	False	NA	NA	False	AATAAA	-3	NA	124426719	124407729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124408692_124408916_124409120_124413776_124413913_124414333_124414480_124415228_124415400_124415717_124415945_124426448
ENSMUSG00000008153.13_5	chr6	-	1239	3	ISM	ENSMUSG00000008153.13	ENSMUST00000112523.8	3703	18	25844	21	1979	-21	3prime_fragment	FALSE	canonical	3	41	junction_1	4.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAACAACTAGAAAAA	1198	False	NA	NA	False	NA	NA	NA	124413859	124407738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124408692_124408916_124409120_124413776
ENSMUSG00000008167.15_0	chr8	+	1838	10	FSM	ENSMUSG00000008167.15	ENSMUST00000095220.4	1907	10	66	3	24	1	multi-exon	TRUE	canonical	3	54	junction_4	11.5864970366477	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGAGTGTGAGCTTTC	NA	False	NA	19	True	AATAAA	-19	NA	85786749	85793747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791126_85791209_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
ENSMUSG00000008167.15_1	chr8	+	1921	9	FSM	ENSMUSG00000008167.15	ENSMUST00000139721.8	1993	9	66	6	25	1	multi-exon	FALSE	canonical	3	68	junction_1	8.18535277187245	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGAGTGTGAGCTTTC	NA	False	NA	19	True	AATAAA	-19	NA	85786750	85793747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
ENSMUSG00000008200.16_0	chr2	+	3944	17	FSM	ENSMUSG00000008200.16	ENSMUST00000238890.2	4691	17	200	547	-34	-547	multi-exon	FALSE	canonical	3	117	junction_11	64.7446909020346	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTTATCCTTTTGCTCT	NA	False	NA	10	True	AATAAA	-19	NA	90575913	90610818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598859_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
ENSMUSG00000008200.16_1	chr2	+	4037	18	NIC	ENSMUSG00000008200.16	novel	4691	17	NA	NA	-24	-547	combination_of_known_junctions	FALSE	canonical	3	33	junction_12	87.2084167868991	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTTATCCTTTTGCTCT	NA	False	NA	10	True	AATAAA	-19	NA	90575923	90610818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598196_90598300_90598859_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
ENSMUSG00000008200.16_2	chr2	+	5451	16	NIC	ENSMUSG00000008200.16	novel	4691	17	NA	NA	-34	-14	intron_retention	FALSE	canonical	3	188	junction_7	57.9674238018408	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGCTGTTAAAGCTTTT	NA	False	NA	4	True	AATAAA	-8	NA	90575913	90611351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
ENSMUSG00000008200.16_3	chr2	+	4618	17	NIC	ENSMUSG00000008200.16	novel	4691	17	NA	NA	-46	-548	intron_retention	FALSE	canonical	3	45	junction_11	74.9708276598305	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGTTATCCTTTTGCTC	NA	False	NA	9	True	AATAAA	-18	NA	90575901	90610817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598196_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
ENSMUSG00000008200.16_49	chr2	+	3002	5	ISM	ENSMUSG00000008200.16	ENSMUST00000238890.2	4691	17	29960	10	-213	-10	3prime_fragment	FALSE	canonical	3	295	junction_2	26.5459507269941	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTTAAAGCTTTTGTCT	6156	False	NA	8	True	AATAAA	-12	NA	90605673	90611355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
ENSMUSG00000008206.17_1	chr8	+	2186	11	FSM	ENSMUSG00000008206.17	ENSMUST00000008350.16	9475	11	264	7025	5	-467	multi-exon	FALSE	canonical	3	44	junction_6	6.51459898996093	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGACTTTTGGTACAAAG	NA	False	NA	-15	True	NA	NA	NA	4543462	4574655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462_4569514_4570215_4570309_4570553_4570683_4571173_4571281_4573353_4573511_4573603
ENSMUSG00000008206.17_9	chr8	+	2240	1	ISM	ENSMUSG00000008206.17	ENSMUST00000008350.16	9475	11	31353	4889	30976	1669	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGCAGAAAAAAGAATGTTT	NA	False	NA	NA	False	NA	NA	NA	4574551	4576791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_4574600_4576800
ENSMUSG00000008226.15_1	chr2	+	1861	4	FSM	ENSMUSG00000008226.15	ENSMUST00000112050.2	1897	4	7	29	2	-29	multi-exon	FALSE	canonical	3	91	junction_1	8.65383665716478	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAAATTTAATCCATT	NA	False	NA	NA	False	AATAAA	-7	NA	73143004	73151111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646
ENSMUSG00000008226.15_15	chr2	+	3187	7	ISM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	2829	11	2754	-11	3prime_fragment	FALSE	canonical	3	42	junction_4	27.8353292697528	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAAATTGATTCATTTGA	NA	False	NA	NA	False	AATAAA	-19	NA	73145773	73168151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_73145937_73148589_73148772_73149646_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
ENSMUSG00000008226.15_18	chr2	+	2877	6	ISM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	5765	38	-1034	-38	3prime_fragment	FALSE	canonical	3	42	junction_3	22.1232908944397	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAAGTAATAAAC	NA	False	NA	NA	False	NA	NA	NA	73148709	73168124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_73148772_73149646_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
ENSMUSG00000008226.15_23	chr2	+	1063	1	ISM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	24146	9	17347	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTGATTCATTTGATC	NA	False	NA	NA	False	AATAAA	-21	NA	73167090	73168153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_73167100_73168200
ENSMUSG00000008226.15_3	chr2	+	3238	8	FSM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	60	11	2	-11	multi-exon	FALSE	canonical	3	42	junction_5	26.8791702981764	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAAATTGATTCATTTGA	NA	False	NA	NA	False	AATAAA	-19	NA	73143004	73168151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
ENSMUSG00000008301.12_0	chr18	+	1523	5	FSM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	203	216	203	-216	multi-exon	FALSE	canonical	3	376	junction_1	34.4818792991333	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGTATAAATTGTTCAG	NA	False	NA	NA	False	ATTAAA	-10	NA	56706096	56720568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_56706208_56708533_56709121_56713251_56713373_56717362_56717447_56719948
ENSMUSG00000008301.12_2	chr18	+	1095	4	ISM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	2953	220	2953	-220	3prime_fragment	FALSE	canonical	3	396	junction_3	27.6325090347503	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTAACATGTATAAATTGT	882	False	NA	NA	False	ATTAAA	-6	NA	56708846	56720564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_56709121_56713251_56713373_56717362_56717447_56719948
ENSMUSG00000008305.19_0	chr4	-	3455	18	NIC	ENSMUSG00000008305.19	novel	4369	20	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_12	75.0867088160778	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAAGTGGTCTTCCTCCTT	NA	False	NA	76	True	AGTAAA	-13	NA	72119132	72036046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ENSMUSG00000008305.19_12	chr4	-	3671	20	NIC	ENSMUSG00000008305.19	novel	3644	20	NA	NA	1	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_8	71.9647882503828	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAAGTGGTCTTCCTCCTT	NA	False	NA	76	True	AGTAAA	-13	NA	72119129	72036046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056923_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72075699_72075717_72076449_72076655_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ENSMUSG00000008305.19_2	chr4	-	3678	20	FSM	ENSMUSG00000008305.19	ENSMUST00000072695.13	3644	20	-39	5	-3	0	multi-exon	FALSE	canonical	3	132	junction_8	62.2917361117158	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAAGTGGTCTTCCTCCTT	NA	False	NA	76	True	AGTAAA	-13	NA	72119133	72036046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72075699_72075717_72076449_72076655_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ENSMUSG00000008305.19_46	chr4	-	2097	7	FSM	ENSMUSG00000008305.19	ENSMUST00000107337.8	2067	7	-33	3	-2	-3	multi-exon	FALSE	canonical	3	194	junction_1	41.6959896819293	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGGGCCTGTGTTCTAA	NA	False	NA	-3	True	AATAAA	-17	NA	72119132	72075819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_72076655_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ENSMUSG00000008305.19_51	chr4	-	2127	7	ISM	ENSMUSG00000008305.19	ENSMUST00000030095.11	2569	20	-743	39378	-2	-3	5prime_fragment	FALSE	canonical	3	29	junction_1	99.9656885580692	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGGGCCTGTGTTCTAA	NA	False	NA	-3	True	AATAAA	-17	NA	72119132	72075819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_72076655_72087328_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ENSMUSG00000008305.19_8	chr4	-	3715	20	FSM	ENSMUSG00000008305.19	ENSMUST00000030095.11	2569	20	-751	-395	-10	0	multi-exon	FALSE	canonical	3	29	junction_14	72.1381791945633	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAAGTGGTCTTCCTCCTT	NA	False	NA	76	True	AGTAAA	-13	NA	72119140	72036046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72075699_72075717_72076449_72076655_72087328_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
ENSMUSG00000008307.12_1	chr5	+	4861	2	NIC	ENSMUSG00000008307.12	novel	235	3	NA	NA	-738	-4	intron_retention	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTTATTTGTATGACATA	NA	False	NA	NA	False	ATTAAA	-14	NA	3627484	3634337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_3632248_3634239
ENSMUSG00000008318.11_0	chr7	-	2474	11	FSM	ENSMUSG00000008318.11	ENSMUST00000008462.11	2851	11	53	324	5	-324	multi-exon	FALSE	canonical	3	27	junction_8	6.09590026165127	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCATGAGGTGCTTCCTTT	2211	False	NA	-4	True	AATAAA	-14	NA	100512600	100495377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_100496485_100496602_100496802_100497225_100497481_100497628_100497711_100498005_100498087_100499271_100499530_100500299_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512500
ENSMUSG00000008318.11_3	chr7	-	2667	11	NIC	ENSMUSG00000008318.11	novel	2851	11	NA	NA	2	-324	combination_of_known_junctions	FALSE	canonical	3	11	junction_10	10.0179838290946	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCATGAGGTGCTTCCTTT	2200	False	NA	-4	True	AATAAA	-14	NA	100512611	100495377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_100496485_100496602_100496802_100497225_100497481_100497628_100497711_100498005_100498087_100499271_100499530_100500299_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512318
ENSMUSG00000008318.11_6	chr7	-	2495	11	NIC	ENSMUSG00000008318.11	novel	2851	11	NA	NA	33	-323	combination_of_known_junctions	FALSE	canonical	2	4	junction_10	11.8105884696742	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGAGGTGCTTCCTTTC	2479	False	NA	-3	True	AATAAA	-15	NA	100512332	100495376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_100496485_100496602_100496802_100497225_100497481_100497628_100497711_100498005_100498087_100499271_100499530_100500299_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512212
ENSMUSG00000008318.11_7	chr7	-	2406	10	NIC	ENSMUSG00000008318.11	novel	2851	11	NA	NA	0	-323	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	13.2310894636482	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGAGGTGCTTCCTTTC	2198	False	NA	-3	True	AATAAA	-15	NA	100512613	100495376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_100496485_100496602_100496802_100497225_100497481_100498005_100498087_100499271_100499530_100500299_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512500
ENSMUSG00000008333.13_0	chr2	+	926	7	FSM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	21	1114	-1	-1114	multi-exon	FALSE	canonical	3	784	junction_1	113.59540777103	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGTTTACTGGTTTATT	2009	False	NA	12	True	AATAAA	-12	NA	142904979	142913659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
ENSMUSG00000008333.13_9	chr2	+	889	6	ISM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	1501	1114	138	-1114	3prime_fragment	FALSE	canonical	3	918	junction_5	81.7518195516161	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGTTTACTGGTTTATT	3489	False	NA	12	True	AATAAA	-12	NA	142906459	142913659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
ENSMUSG00000008348.10_0	chr5	-	1907	1	ISM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	2131	12	1303	0	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCTTCATTTGTGTT	NA	False	NA	-12	True	AATAAA	-14	NA	125464947	125463040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_125463000_125464900
ENSMUSG00000008348.10_4	chr5	-	2339	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	262	17	262	-5	multi-exon	FALSE	canonical	3	916	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCAAAAAATCTTCATTT	NA	False	NA	-17	True	AATAAA	-9	NA	125466816	125463045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_125465329_125466760
ENSMUSG00000008373.17_1	chr7	+	1848	14	FSM	ENSMUSG00000008373.17	ENSMUST00000008517.13	3144	14	37	1259	30	-2	multi-exon	FALSE	canonical	3	674	junction_1	77.2880572079687	1131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGGGTGTGAGTGATT	2970	False	NA	12	True	ATTAAA	-20	NA	3633020	3644226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3633056_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
ENSMUSG00000008373.17_24	chr7	+	1814	13	ISM	ENSMUSG00000008373.17	ENSMUST00000008517.13	3144	14	572	1259	0	-2	3prime_fragment	FALSE	canonical	3	845	junction_3	49.0102030193714	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGGGTGTGAGTGATT	3505	False	NA	12	True	ATTAAA	-20	NA	3633555	3644226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
ENSMUSG00000008384.9_0	chr7	+	1179	2	FSM	ENSMUSG00000008384.9	ENSMUST00000008528.8	1233	2	45	9	45	-9	multi-exon	FALSE	canonical	3	24	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACCAAGTGTGTGTGCT	6634	False	NA	3	True	ATTAAA	-13	NA	27186379	27189732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27186504_27188677
ENSMUSG00000008393.10_0	chr16	-	2850	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	1	7	1	-7	multi-exon	FALSE	canonical	3	300	junction_3	44.5146667465405	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATGAGGTGACTGTAAAA	NA	False	NA	-18	True	AATAAA	-14	NA	8490018	8476450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
ENSMUSG00000008393.10_3	chr16	-	2809	3	ISM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	7732	7	7732	-7	3prime_fragment	TRUE	canonical	3	357	junction_2	26	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATGAGGTGACTGTAAAA	NA	False	NA	-18	True	AATAAA	-14	NA	8482287	8476450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_8478968_8481450_8481574_8482118
ENSMUSG00000008393.10_4	chr16	-	1970	1	ISM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	11599	7	11599	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATGAGGTGACTGTAAAA	NA	False	NA	-18	True	AATAAA	-14	NA	8478420	8476450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_8476400_8478400
ENSMUSG00000008398.17_1	chr10	-	2298	5	FSM	ENSMUSG00000008398.17	ENSMUST00000008542.12	4212	5	-3	1917	-3	-8	multi-exon	FALSE	canonical	3	43	junction_3	2.48746859276655	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACATGTTCCAAAGTG	NA	False	NA	NA	False	AATAAA	-9	NA	93147000	93085192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_93085971_93090550_93090674_93100741_93101543_93120630_93120840_93146613
ENSMUSG00000008398.17_2	chr10	-	2050	1	ISM	ENSMUSG00000008398.17	ENSMUST00000008542.12	4212	5	61654	18	61330	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGTTTGGATTCGAGGG	NA	False	NA	NA	False	AATAAA	-15	NA	93085343	93083293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_93083300_93085300
ENSMUSG00000008398.17_4	chr10	-	1789	4	ISM	ENSMUSG00000008398.17	ENSMUST00000008542.12	4212	5	26283	1914	25959	-5	3prime_fragment	FALSE	canonical	3	43	junction_3	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACATGTTCCAAAGTGCAC	3719	False	NA	NA	False	AATAAA	-12	NA	93120714	93085189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_93085971_93090550_93090674_93100741_93101543_93120630
ENSMUSG00000008398.17_5	chr10	-	3834	6	FSM	ENSMUSG00000008398.17	ENSMUST00000129827.8	1653	6	-296	-1885	28	-24	multi-exon	FALSE	canonical	2	3	junction_3	17.64086165696	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGAGTGTTTGGATT	NA	False	NA	NA	False	AATAAA	-9	NA	93146969	93083299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_93085971_93090550_93090674_93100741_93100873_93101198_93101543_93120630_93120840_93146613
ENSMUSG00000008429.9_0	chr9	-	2703	8	FSM	ENSMUSG00000008429.9	ENSMUST00000008573.9	2781	8	77	1	-45	-1	multi-exon	FALSE	canonical	3	81	junction_2	20.4550278236258	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACAGCCTTATGGGATA	NA	False	NA	NA	False	AATAAA	-13	NA	25063039	25019428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_25020302_25020735_25020851_25021706_25022031_25025116_25025240_25036167_25036320_25041831_25041946_25044490_25044569_25062115
ENSMUSG00000008429.9_2	chr9	-	2627	8	NNC	ENSMUSG00000008429.9	novel	2781	8	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	36.7145636454183	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACAGCCTTATGGGATA	NA	False	NA	NA	False	AATAAA	-13	NA	25062992	25019428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_25020302_25020735_25020851_25021735_25022031_25025116_25025240_25036167_25036320_25041831_25041946_25044490_25044569_25062115
ENSMUSG00000008429.9_8	chr9	-	4802	1	FSM	ENSMUSG00000008429.9	ENSMUST00000214190.2	3955	1	-97	-750	25	750	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTAGTCTTATCTTTA	NA	False	NA	NA	False	ATTAAA	-10	NA	25063091	25058289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_25058300_25063100
ENSMUSG00000008435.16_0	chr7	-	3028	7	FSM	ENSMUSG00000008435.16	ENSMUST00000008579.14	3034	7	5	1	-2	-1	multi-exon	FALSE	canonical	3	20	junction_3	6.10100173924104	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATTTGTCATTGTCCTT	NA	False	NA	-3	True	AATAAA	-21	NA	4448643	4428666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4448445
ENSMUSG00000008435.16_1	chr7	-	2924	6	ISM	ENSMUSG00000008435.16	ENSMUST00000119485.8	2119	7	-44	898	-3	-1	5prime_fragment	FALSE	canonical	2	7	junction_3	10.0279609093773	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATTTGTCATTGTCCTT	NA	False	NA	-3	True	AATAAA	-21	NA	4448644	4428666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_4430802_4433392_4433495_4434420_4434634_4445592_4445749_4447201_4447321_4448445
ENSMUSG00000008435.16_10	chr7	-	2814	6	ISM	ENSMUSG00000008435.16	ENSMUST00000008579.14	3034	7	1347	-2	879	2	3prime_fragment	FALSE	canonical	3	20	junction_3	6.15142259969188	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGTCATTGTCCTTTTG	NA	False	NA	0	True	AATAAA	-24	NA	4447301	4428663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201
ENSMUSG00000008435.16_11	chr7	-	2449	3	ISM	ENSMUSG00000008435.16	ENSMUST00000008579.14	3034	7	14014	3	13546	-3	3prime_fragment	FALSE	canonical	3	25	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTAATTTGTCATTGTCC	NA	False	NA	-5	True	AATAAA	-19	NA	4434634	4428668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_4430802_4433392_4433495_4434420
ENSMUSG00000008435.16_13	chr7	-	3064	7	NIC	ENSMUSG00000008435.16	novel	3034	7	NA	NA	-30	-1	combination_of_known_junctions	FALSE	canonical	2	2	junction_6	10.6874796945876	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATTTGTCATTGTCCTT	NA	False	NA	-3	True	AATAAA	-21	NA	4448210	4428666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4447976
ENSMUSG00000008435.16_5	chr7	-	3050	8	NIC	ENSMUSG00000008435.16	novel	3034	7	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	9.2493794607078	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATTTGTCATTGTCCTT	NA	False	NA	-3	True	AATAAA	-21	NA	4448630	4428666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4446735_4446771_4447201_4447321_4448445
ENSMUSG00000008435.16_6	chr7	-	2953	7	NIC	ENSMUSG00000008435.16	novel	3034	7	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	9.96103519832262	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATTTGTCATTGTCCTT	NA	False	NA	-3	True	AATAAA	-21	NA	4448605	4428666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_4430802_4433392_4433495_4434420_4434634_4445592_4445749_4446735_4446771_4447201_4447321_4448412
ENSMUSG00000008435.16_7	chr7	-	3042	7	NIC	ENSMUSG00000008435.16	novel	3034	7	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	6	junction_6	9.45163125250522	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATTTGTCATTGTCCTT	NA	False	NA	-3	True	AATAAA	-21	NA	4448624	4428666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4448412
ENSMUSG00000008435.16_8	chr7	-	2072	1	NIC	ENSMUSG00000008435.16	novel	2119	7	NA	NA	17441	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTAATTTGTCATTGTCCT	NA	False	NA	-4	True	AATAAA	-20	NA	4430739	4428667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_4428700_4430700
ENSMUSG00000008450.9_0	chr8	+	874	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	77	-3	-8	3	multi-exon	FALSE	canonical	3	2641	junction_1	453.90775494587	1330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGTTTAAATTGTTTTAA	NA	False	NA	-5	True	AATAAA	-18	NA	106587288	106605965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
ENSMUSG00000008450.9_2	chr8	+	1834	4	FSM	ENSMUSG00000008450.9	ENSMUST00000212398.2	518	4	-8	-1308	-8	-736	multi-exon	FALSE	canonical	3	2641	junction_1	479.48606746066	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGTTGTATTTAT	NA	False	NA	NA	False	TATAAA	-21	NA	106587288	106604729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141
ENSMUSG00000008475.14_0	chr1	+	1782	4	FSM	ENSMUSG00000008475.14	ENSMUST00000077755.11	1914	4	110	22	110	-22	multi-exon	FALSE	canonical	0	0	junction_1	649.932817040859	1041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATTTTTTTCTTAATTG	NA	False	NA	78	True	AATAAA	-13	NA	152642402	152651326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_152642619_152644611_152644685_152647114_152647292_152650010
ENSMUSG00000008475.14_2	chr1	+	1780	4	NNC	ENSMUSG00000008475.14	novel	1914	4	NA	NA	110	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	649.932817040859	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATTTTTTTCTTAATTG	NA	False	NA	78	True	AATAAA	-13	NA	152642402	152651326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_152642619_152644613_152644685_152647114_152647292_152650010
ENSMUSG00000008489.19_1	chr4	-	3663	6	NIC	ENSMUSG00000008489.19	novel	3730	7	NA	NA	-3	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	36.2082863444267	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGAACTGTGTATCTTT	NA	False	NA	-6	True	AATAAA	-12	NA	91260274	91139007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_91141805_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
ENSMUSG00000008489.19_2	chr4	-	3703	7	NIC	ENSMUSG00000008489.19	novel	3730	7	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	40.2947473830854	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGAACTGTGTATCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	91260274	91139006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_91141805_91142377_91142417_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
ENSMUSG00000008489.19_4	chr4	-	3646	6	FSM	ENSMUSG00000008489.19	ENSMUST00000107110.8	3671	6	14	11	14	-5	multi-exon	FALSE	canonical	0	0	junction_5	41.6461282714252	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGAAAGAACTGTGTATC	NA	False	NA	-9	True	AATAAA	-9	NA	91260257	91139010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_91141808_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
ENSMUSG00000008489.19_5	chr4	-	2005	1	ISM	ENSMUSG00000008489.19	ENSMUST00000107110.8	3671	6	119260	7	1808	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGAACTGTGTATCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	91141011	91139006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_91139000_91141000
ENSMUSG00000008489.19_6	chr4	-	3659	7	FSM	ENSMUSG00000008489.19	ENSMUST00000008633.15	3730	7	65	6	-33	0	multi-exon	FALSE	canonical	0	0	junction_6	42.0571700849636	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACTGTGTATCTTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	91260226	91139005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_91141808_91142377_91142417_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
ENSMUSG00000008540.12_0	chr6	+	930	4	FSM	ENSMUSG00000008540.12	ENSMUST00000008684.11	1167	4	227	10	-11	3	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGAAATTTGTTTGTT	2441	False	NA	NA	False	ATTAAA	-7	NA	138117540	138133743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_138117605_138124656_138124814_138127765_138127861_138133129
ENSMUSG00000008575.18_0	chr4	-	4044	1	ISM	ENSMUSG00000008575.18	ENSMUST00000050872.15	8770	12	211087	5	205095	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGACTCTGGCCTCGTGTT	NA	False	NA	-5	True	AATAAA	-13	NA	82212458	82208414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_82208400_82212500
ENSMUSG00000008575.18_1	chr4	-	3286	12	FSM	ENSMUSG00000008575.18	ENSMUST00000107247.8	3267	12	-55	36	2	-3	multi-exon	FALSE	canonical	2	8	junction_3	6.85987253815036	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82423999	82214320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_82215049_82228539_82228629_82238710_82238794_82241808_82241948_82245965_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474_82417007_82422967
ENSMUSG00000008575.18_10	chr4	-	2711	8	FSM	ENSMUSG00000008575.18	ENSMUST00000122918.8	2699	8	-68	56	-68	-56	multi-exon	FALSE	canonical	3	16	junction_3	4.89064079103534	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	82423615	82245117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474_82417007_82422967
ENSMUSG00000008575.18_2	chr4	-	3267	12	FSM	ENSMUSG00000008575.18	ENSMUST00000107248.8	3294	12	-9	36	-9	-3	multi-exon	FALSE	canonical	2	7	junction_3	7.01238573660978	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82423953	82214320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_82215049_82228539_82228629_82238710_82238794_82241781_82241948_82245965_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474_82417007_82422967
ENSMUSG00000008575.18_3	chr4	-	2839	11	NIC	ENSMUSG00000008575.18	novel	3294	12	NA	NA	-67	-3	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	8.44037913840368	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82423614	82214320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_82215049_82238710_82238794_82241781_82241948_82245965_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474_82417007_82422967
ENSMUSG00000008575.18_4	chr4	-	2896	9	FSM	ENSMUSG00000008575.18	ENSMUST00000064770.9	8429	9	-375	5908	24	-3	multi-exon	FALSE	canonical	3	11	junction_1	6.11861912526021	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82423920	82214320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_82215049_82245965_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474_82417007_82422967
ENSMUSG00000008575.18_7	chr4	-	4546	2	FSM	ENSMUSG00000008575.18	ENSMUST00000135024.2	3835	2	399	-1110	-70	1110	multi-exon	FALSE	canonical	3	26	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAGA	-31	NA	82423617	82413110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_82417007_82422967
ENSMUSG00000008601.13_1	chr3	-	1065	5	FSM	ENSMUSG00000008601.13	ENSMUST00000008745.13	1081	5	16	0	-2	0	multi-exon	TRUE	canonical	1	1	junction_4	5.2618912949623	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGCTGCCTTCCATCTG	5717	False	NA	0	True	AATAAA	-24	NA	88455591	88449335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88449678_88450007_88450089_88450626_88450821_88452367_88452564_88455339
ENSMUSG00000008601.13_2	chr3	-	1067	4	ISM	ENSMUSG00000008601.13	ENSMUST00000008745.13	1081	5	2787	3	-1999	-3	3prime_fragment	FALSE	canonical	3	11	junction_1	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACCCTGCTGCCTTCCAT	8488	False	NA	-3	True	AATAAA	-21	NA	88452820	88449338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88449678_88450007_88450089_88450626_88450821_88452367
ENSMUSG00000008604.12_0	chr3	+	3317	11	FSM	ENSMUSG00000008604.12	ENSMUST00000008748.8	3330	11	7	6	1	-6	multi-exon	FALSE	canonical	3	1295	junction_8	115.436605979213	3127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTATATTGGTGGTTTGT	6112	False	NA	NA	False	AATAAA	-20	NA	88461071	88477026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414_88470641_88471676_88471817_88472313_88472398_88472519_88472636_88472997_88473185_88475387
ENSMUSG00000008604.12_4	chr3	+	4355	10	NIC	ENSMUSG00000008604.12	novel	3330	11	NA	NA	1	-4	intron_retention	FALSE	canonical	3	1295	junction_7	121.63312576741	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATATTGGTGGTTTGTTT	6112	False	NA	NA	False	AATAAA	-22	NA	88461071	88477028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414_88471817_88472313_88472398_88472519_88472636_88472997_88473185_88475387
ENSMUSG00000008668.16_0	chr17	-	542	5	FSM	ENSMUSG00000008668.16	ENSMUST00000008812.9	560	5	14	4	0	1	multi-exon	FALSE	canonical	3	20050	junction_4	1387.25833481007	4824	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACCTCCGTCTCAGTTTG	NA	False	NA	NA	False	AATAAA	-15	NA	34174637	34170976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174591
ENSMUSG00000008682.14_0	chrX	+	781	7	FSM	ENSMUSG00000008682.14	ENSMUST00000008826.14	799	7	13	5	13	-5	multi-exon	FALSE	canonical	3	2920	junction_1	2439.95592514838	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGTTTTTGTTTCTGA	NA	False	NA	7	True	AATAAA	-17	NA	73314430	73316736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73314481_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUSG00000008682.14_1	chrX	+	314	2	ISM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	1878	4	901	-4	3prime_fragment	FALSE	canonical	3	9593	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTTTTTGTTTCTGAT	NA	False	NA	8	True	AATAAA	-18	NA	73316343	73316737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73316441_73316520
ENSMUSG00000008682.14_15	chrX	+	600	4	ISM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	967	4	-10	-4	3prime_fragment	FALSE	canonical	3	9221	junction_1	230.206187772807	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTTTTTGTTTCTGAT	NA	False	NA	8	True	AATAAA	-18	NA	73315432	73316737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUSG00000008682.14_16	chrX	+	1052	5	ISM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	437	1	-112	-1	3prime_fragment	FALSE	canonical	3	9221	junction_2	201.900191926605	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTTGTTTCTGATTCT	NA	False	NA	11	True	AATAAA	-21	NA	73314902	73316740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUSG00000008682.14_18	chrX	+	463	3	ISM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	1368	11	391	-11	3prime_fragment	FALSE	canonical	3	9593	junction_2	90.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCGCTTATGTTTTTGT	NA	False	NA	1	True	AATAAA	-11	NA	73315833	73316730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73315924_73316277_73316441_73316520
ENSMUSG00000008682.14_4	chrX	+	196	1	ISM	ENSMUSG00000008682.14	ENSMUST00000008826.14	799	7	2123	5	1098	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGTTTTTGTTTCTGA	NA	False	NA	7	True	AATAAA	-17	NA	73316540	73316736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73316500_73316700
ENSMUSG00000008682.14_6	chrX	+	845	6	FSM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	5	5	5	-5	multi-exon	FALSE	canonical	3	7516	junction_1	832.521615335001	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGTTTTTGTTTCTGA	NA	False	NA	7	True	AATAAA	-17	NA	73314470	73316736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUSG00000008683.17_1	chr7	-	434	4	FSM	ENSMUSG00000008683.17	ENSMUST00000106590.5	637	4	307	-104	9	-1	multi-exon	FALSE	canonical	3	8104	junction_2	1380.96640879575	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGGGTCAGTCCTTTTG	NA	False	NA	-34	True	AATAAA	-18	NA	117714470	117708287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331
ENSMUSG00000008683.17_2	chr7	-	459	5	FSM	ENSMUSG00000008683.17	ENSMUST00000131374.8	5179	5	28	4692	28	0	multi-exon	FALSE	canonical	3	7367	junction_4	1521.10568337641	1588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715383	117708286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117715358
ENSMUSG00000008690.16_2	chr15	+	2023	20	FSM	ENSMUSG00000008690.16	ENSMUST00000074552.12	3299	20	29	1247	2	16	multi-exon	FALSE	canonical	1	369	junction_14	161.21684095061	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGTTCACCGGACAGACT	NA	False	NA	14	True	AATAAA	-14	NA	89239967	89255782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ENSMUSG00000008690.16_3	chr15	+	1932	20	FSM	ENSMUSG00000008690.16	ENSMUST00000036987.12	3223	20	44	1247	0	16	multi-exon	TRUE	canonical	1	145	junction_1	244.22211859964	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGTTCACCGGACAGACT	NA	False	NA	14	True	AATAAA	-14	NA	89239965	89255782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_89240054_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ENSMUSG00000008690.16_5	chr15	+	2005	20	FSM	ENSMUSG00000008690.16	ENSMUST00000145259.8	3255	20	3	1247	3	16	multi-exon	FALSE	canonical	0	0	junction_1	269.960005245468	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGTTCACCGGACAGACT	NA	False	NA	14	True	AATAAA	-14	NA	89239968	89255782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_89240130_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ENSMUSG00000008690.16_6	chr15	+	2023	20	FSM	ENSMUSG00000008690.16	ENSMUST00000088717.7	3302	20	32	1247	5	16	multi-exon	FALSE	canonical	1	166	junction_15	242.636453884124	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGTTCACCGGACAGACT	NA	False	NA	14	True	AATAAA	-14	NA	89239970	89255782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254803_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ENSMUSG00000008730.18_0	chr3	-	3157	1	ISM	ENSMUSG00000008730.18	ENSMUST00000118317.8	7939	16	48589	3	8040	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGTGGCTGGTTTCAAT	NA	False	NA	-5	True	AATAAA	-15	NA	103650290	103647133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_103647100_103650300
ENSMUSG00000008730.18_1	chr3	-	8037	16	FSM	ENSMUSG00000008730.18	ENSMUST00000029438.15	4185	16	-18	-3834	1	-11	multi-exon	FALSE	canonical	2	63	junction_1	12.16260206078	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTCTGACTGTGGCTG	NA	False	NA	-13	True	AATAAA	-7	NA	103698590	103647141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_103651753_103652575_103652707_103654110_103654353_103656594_103656802_103657518_103657702_103658091_103658235_103660695_103660831_103661516_103661639_103665850_103666077_103667810_103667974_103668802_103668988_103670988_103671076_103671777_103671898_103676713_103676838_103684537_103685616_103698310
ENSMUSG00000008730.18_11	chr3	-	6795	15	ISM	ENSMUSG00000008730.18	ENSMUST00000118317.8	7939	16	13895	342	13407	-342	3prime_fragment	FALSE	canonical	2	63	junction_1	12.4891789896988	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCCTGTGTGTGGTTAAA	NA	False	NA	NA	False	ATTAAA	-16	NA	103684984	103647472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_103651753_103652575_103652707_103654110_103654353_103656594_103656802_103657518_103657702_103658091_103658235_103660695_103660831_103661516_103661639_103665850_103666077_103667810_103667974_103668802_103668988_103670988_103671076_103671777_103671898_103676713_103676838_103684537
ENSMUSG00000008730.18_19	chr3	-	3543	15	ISM	ENSMUSG00000008730.18	ENSMUST00000029438.15	4185	16	-23	1488	-4	8	5prime_fragment	FALSE	canonical	2	67	junction_8	11.1302584453922	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAACCTCTGGTGTTCTGT	NA	False	NA	NA	False	AATAAA	-23	NA	103698595	103652463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_103652707_103654110_103654353_103656594_103656802_103657518_103657702_103658091_103658235_103660695_103660831_103661516_103661639_103665850_103666077_103667810_103667974_103668802_103668988_103670988_103671076_103671777_103671898_103676713_103676838_103684537_103685616_103698310
ENSMUSG00000008730.18_4	chr3	-	7935	15	FSM	ENSMUSG00000008730.18	ENSMUST00000106845.9	3967	15	-224	-3744	-24	-3	multi-exon	FALSE	canonical	0	0	junction_6	25.0106099934587	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGTGGCTGGTTTCAAT	NA	False	NA	-5	True	AATAAA	-15	NA	103698615	103647133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_103651753_103652575_103652707_103654110_103654353_103656594_103656802_103657518_103657702_103658091_103658235_103661516_103661639_103665850_103666077_103667810_103667974_103668802_103668988_103670988_103671076_103671777_103671898_103676713_103676838_103684537_103685616_103698310
ENSMUSG00000008730.18_9	chr3	-	5553	7	ISM	ENSMUSG00000008730.18	ENSMUST00000118317.8	7939	16	38155	4	-2343	-4	3prime_fragment	FALSE	canonical	3	63	junction_1	13.076696830622	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTGTGGCTGGTTTCAA	NA	False	NA	-6	True	AATAAA	-14	NA	103660724	103647134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_103651753_103652575_103652707_103654110_103654353_103656594_103656802_103657518_103657702_103658091_103658235_103660695
ENSMUSG00000008734.10_0	chr7	-	2887	4	FSM	ENSMUSG00000008734.10	ENSMUST00000008878.10	4518	4	28	1603	28	-641	multi-exon	FALSE	canonical	3	70	junction_1	4.64279609239471	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGTCTCTGCTGTGTCC	NA	False	NA	-4	True	AATAAA	-18	NA	118594406	118572872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_118574427_118575735_118575894_118582837_118583869_118594262
ENSMUSG00000008734.10_2	chr7	-	2794	1	ISM	ENSMUSG00000008734.10	ENSMUST00000008878.10	4518	4	20366	5	356	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTACCTAAGATGCGTGGT	4312	False	NA	-8	True	AATAAA	-10	NA	118574068	118571274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_118571300_118574100
ENSMUSG00000008734.10_3	chr7	-	3632	3	ISM	ENSMUSG00000008734.10	ENSMUST00000008878.10	4518	4	11279	1	712	-1	3prime_fragment	FALSE	canonical	3	70	junction_1	4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAAGATGCGTGGTAGCT	1550	False	NA	-4	True	AATAAA	-14	NA	118583155	118571270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_118574427_118575735_118575894_118582837
ENSMUSG00000008734.10_4	chr7	-	1792	2	FSM	ENSMUSG00000008734.10	ENSMUST00000207614.2	686	2	32	-1138	32	-641	multi-exon	FALSE	canonical	3	70	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGTCTCTGCTGTGTCC	8732	False	NA	-4	True	AATAAA	-18	NA	118575973	118572872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_118574427_118575735
ENSMUSG00000008763.17_1	chr3	-	1457	1	Genic_Genomic	ENSMUSG00000008763.17	novel	NA	NA	NA	NA	88929	1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTCTCTCTCTCTTTTT	5463	False	NA	0	True	AATAAA	-16	NA	100470979	100469522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_-_100469500_100471000
ENSMUSG00000008763.17_12	chr3	-	3595	12	ISM	ENSMUSG00000008763.17	ENSMUST00000008907.14	7969	13	29422	3238	-3489	-3238	3prime_fragment	FALSE	canonical	3	127	junction_4	6.99704778359777	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACGACTGCCAGTGTCA	NA	False	NA	-10	True	ATTAAA	-8	NA	100563397	100472761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_100475059_100485791_100485908_100489300_100489474_100495033_100495254_100499148_100499265_100524278_100524373_100527344_100527469_100539819_100539915_100551856_100551938_100554307_100554427_100559854_100559952_100563334
ENSMUSG00000008763.17_2	chr3	-	4692	13	FSM	ENSMUSG00000008763.17	ENSMUST00000008907.14	7969	13	39	3238	-5	-3238	multi-exon	FALSE	canonical	3	127	junction_4	6.86122357082823	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACGACTGCCAGTGTCA	NA	False	NA	-10	True	ATTAAA	-8	NA	100592780	100472761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_100475059_100485791_100485908_100489300_100489474_100495033_100495254_100499148_100499265_100524278_100524373_100527344_100527469_100539819_100539915_100551856_100551938_100554307_100554427_100559854_100559952_100563334_100563591_100591876
ENSMUSG00000008763.17_24	chr3	-	3142	7	ISM	ENSMUSG00000008763.17	ENSMUST00000008907.14	7969	13	65349	3238	32438	-3238	3prime_fragment	FALSE	canonical	3	127	junction_4	8.72576007513895	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACGACTGCCAGTGTCA	NA	False	NA	-10	True	ATTAAA	-8	NA	100527470	100472761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_100475059_100485791_100485908_100489300_100489474_100495033_100495254_100499148_100499265_100524278_100524373_100527344
ENSMUSG00000008763.17_3	chr3	-	988	1	ISM	ENSMUSG00000008763.17	ENSMUST00000008907.14	7969	13	119077	3231	86166	-3231	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCAGTGTCATGTTTGA	9894	False	NA	-3	True	ATTAAA	-15	NA	100473742	100472754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_100472800_100473700
ENSMUSG00000008763.17_9	chr3	-	4239	14	NIC	ENSMUSG00000008763.17	novel	7969	13	NA	NA	0	-3232	combination_of_known_junctions	FALSE	canonical	3	11	junction_13	34.4558717868481	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCCAGTGTCATGTTTG	NA	False	NA	-4	True	ATTAAA	-14	NA	100592775	100472755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_100475059_100485791_100485908_100489300_100489474_100495033_100495254_100499148_100499265_100524278_100524373_100527344_100527469_100539819_100539915_100551856_100551938_100554307_100554427_100559854_100559952_100563334_100563591_100591876_100592004_100592457
ENSMUSG00000008822.16_0	chr12	-	611	3	FSM	ENSMUSG00000008822.16	ENSMUST00000008966.13	648	3	29	8	12	3	multi-exon	FALSE	canonical	3	386	junction_2	28.5	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTACATTGCTTCCCC	4320	False	NA	-8	True	AATAAA	-16	NA	85327180	85319179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_85319602_85326764_85326857_85327083
ENSMUSG00000008822.16_2	chr12	-	510	2	FSM	ENSMUSG00000008822.16	ENSMUST00000117138.3	735	2	224	1	224	-1	multi-exon	FALSE	canonical	3	443	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTATGCTTACATTGCTT	4644	False	NA	-12	True	AATAAA	-12	NA	85326856	85319183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_85319602_85326764
ENSMUSG00000008822.16_3	chr12	-	307	1	ISM	ENSMUSG00000008822.16	ENSMUST00000008966.13	648	3	7718	13	7589	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTATGCTTACATTGCT	NA	False	NA	-13	True	AATAAA	-11	NA	85319491	85319184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85319200_85319500
ENSMUSG00000008855.18_1	chr11	-	3686	26	NIC	ENSMUSG00000008855.18	novel	3788	27	NA	NA	1	-2	combination_of_known_splicesites	FALSE	canonical	1	22	junction_24	52.2038466015676	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAACGTGTGCCGTG	NA	False	NA	-9	True	ATTAAA	-16	NA	102120967	102086578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102115559_102115782_102120830
ENSMUSG00000008855.18_13	chr11	-	3854	28	FSM	ENSMUSG00000008855.18	ENSMUST00000124077.8	3872	28	16	2	1	0	multi-exon	TRUE	canonical	1	1	junction_25	66.6396241448948	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAACGTGTGCCGTGTG	NA	False	NA	-7	True	ATTAAA	-18	NA	102120949	102086576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102104750_102104863_102109241_102109314_102115559_102115782_102120830
ENSMUSG00000008855.18_3	chr11	-	3760	27	FSM	ENSMUSG00000008855.18	ENSMUST00000107152.9	3788	27	28	0	1	0	multi-exon	FALSE	canonical	1	50	junction_25	47.7576630363989	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAACGTGTGCCGTGTG	NA	False	NA	-7	True	ATTAAA	-18	NA	102120964	102086576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102109241_102109317_102115559_102115782_102120830
ENSMUSG00000008855.18_6	chr11	-	3827	26	NIC	ENSMUSG00000008855.18	novel	3872	28	NA	NA	7	-2	intron_retention	FALSE	canonical	1	78	junction_13	41.1161087653002	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAACGTGTGCCGTG	NA	False	NA	-9	True	ATTAAA	-16	NA	102120943	102086578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097601_102097732_102097993_102109241_102109314_102115559_102115782_102120830
ENSMUSG00000008855.18_7	chr11	-	3757	27	NIC	ENSMUSG00000008855.18	novel	3788	27	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	78	junction_13	40.333300731889	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAACGTGTGCCGTGTG	NA	False	NA	-7	True	ATTAAA	-18	NA	102120964	102086576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102109241_102109314_102115559_102115782_102120830
ENSMUSG00000008859.9_1	chr13	-	1202	5	FSM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	32	1454	32	-1454	multi-exon	FALSE	canonical	3	817	junction_1	45.9292934846597	505	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATAAAGCTTAAATTTTA	NA	False	NA	NA	False	AAGAAA	-22	NA	18118792	18056609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_18057087_18063091_18063267_18067706_18067916_18071537_18071688_18118601
ENSMUSG00000008892.13_0	chr8	-	1342	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	5	7	5	-7	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	1383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAATTGTTCATCTGAC	NA	False	NA	-18	True	AATAAA	-15	NA	23083769	23067108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
ENSMUSG00000008932.11_1	chr4	+	3004	11	FSM	ENSMUSG00000008932.11	ENSMUST00000106713.5	3007	11	-9	12	-9	-6	multi-exon	TRUE	canonical	0	0	junction_7	1.32664991614216	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGACTTATGGATGTGACA	2385	False	NA	NA	False	AATAAA	-16	NA	107825519	107870717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107825908_107834800_107834881_107850135_107850352_107859373_107859417_107861466_107861687_107864686_107864787_107865337_107865572_107866875_107867071_107867566_107867702_107868089_107868193_107869427
ENSMUSG00000008958.15_0	chr3	+	1303	6	FSM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	35	118	15	-118	multi-exon	FALSE	canonical	0	0	junction_1	358.969413738831	609	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTCTGATGTGTAAGG	2595	False	NA	45	True	AATAAA	-13	NA	95018367	95030244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
ENSMUSG00000008976.17_0	chr16	+	4667	10	FSM	ENSMUSG00000008976.17	ENSMUST00000114184.8	2202	10	-4	-2461	-4	-3	multi-exon	FALSE	canonical	3	375	junction_1	83.9617784882715	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTTTTGGTTTTTGTT	NA	False	NA	3	True	AATAAA	-12	NA	84631808	84660664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
ENSMUSG00000008976.17_25	chr16	+	4747	10	FSM	ENSMUSG00000008976.17	ENSMUST00000009120.8	4987	10	237	3	237	-3	multi-exon	FALSE	canonical	3	317	junction_1	99.7045016753055	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTTTTGGTTTTTGTT	NA	False	NA	3	True	AATAAA	-12	NA	84632248	84660664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
ENSMUSG00000008976.17_61	chr16	+	2682	1	ISM	ENSMUSG00000008976.17	ENSMUST00000009120.8	4987	10	25971	3	1050	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTTTTGGTTTTTGTT	NA	False	NA	3	True	AATAAA	-12	NA	84657982	84660664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_84658000_84660700
ENSMUSG00000008999.8_1	chr2	-	3666	8	NNC	ENSMUSG00000008999.8	novel	3670	7	NA	NA	-167	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	35.366304729277	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGACCCATGTGTGTAT	NA	False	NA	-8	True	AATAAA	-21	NA	172782281	172709813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_172710882_172711043_172712080_172714664_172714776_172717007_172717085_172721118_172721317_172735240_172735390_172758259_172758453_172781447
ENSMUSG00000008999.8_20	chr2	-	2016	7	FSM	ENSMUSG00000008999.8	ENSMUST00000009143.8	3670	7	-24	1678	-24	-1678	multi-exon	FALSE	canonical	3	82	junction_3	13.8734358477712	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGTTAGGACGTTACA	NA	False	NA	-42	True	AATAAA	-12	NA	172782138	172711482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_172712080_172714664_172714776_172717007_172717085_172721118_172721317_172735240_172735390_172758259_172758453_172781447
ENSMUSG00000009013.6_0	chr5	-	650	3	FSM	ENSMUSG00000009013.6	ENSMUST00000009157.4	2030	3	67	1313	2	-1	multi-exon	FALSE	canonical	3	3784	junction_1	210.5	847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTCTGCTAGTTTGTTC	NA	False	NA	-2	True	AATAAA	-15	NA	115438991	115436481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115436893_115438571_115438710_115438890
ENSMUSG00000009013.6_1	chr5	-	828	2	FSM	ENSMUSG00000009013.6	ENSMUST00000112090.2	729	2	-17	-82	5	-1	multi-exon	FALSE	canonical	3	3784	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTCTGCTAGTTTGTTC	NA	False	NA	-2	True	AATAAA	-15	NA	115438988	115436481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115436893_115438571
ENSMUSG00000009013.6_3	chr5	-	408	1	FSM	ENSMUSG00000009013.6	ENSMUST00000202980.2	2242	1	1833	1	605	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTCTGCTAGTTTGTTC	NA	False	NA	-2	True	AATAAA	-15	NA	115436889	115436481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115436500_115436900
ENSMUSG00000009030.15_0	chr2	-	2771	4	FSM	ENSMUSG00000009030.15	ENSMUST00000009174.15	2858	4	81	6	2	-6	multi-exon	FALSE	canonical	3	157	junction_1	14.3527000944073	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGCCCCTGTATATTAG	NA	False	NA	-13	True	AATAAA	-14	NA	37249263	37240091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37249154
ENSMUSG00000009030.15_1	chr2	-	1892	1	ISM	ENSMUSG00000009030.15	ENSMUST00000009174.15	2858	4	7363	4	7220	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCCCCTGTATATTAGAT	NA	False	NA	-11	True	AATAAA	-16	NA	37241981	37240089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_37240100_37242000
ENSMUSG00000009030.15_3	chr2	-	3119	4	FSM	ENSMUSG00000009030.15	ENSMUST00000112940.8	3056	4	447	-510	383	-4	multi-exon	FALSE	canonical	2	7	junction_3	79.6366749682582	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCCCCTGTATATTAGAT	NA	False	NA	-11	True	AATAAA	-16	NA	37248818	37240089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37248363
ENSMUSG00000009030.15_4	chr2	-	2408	2	ISM	ENSMUSG00000009030.15	ENSMUST00000009174.15	2858	4	3592	6	3449	-6	3prime_fragment	FALSE	canonical	3	157	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGCCCCTGTATATTAG	NA	False	NA	-13	True	AATAAA	-14	NA	37245752	37240091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_37242395_37245647
ENSMUSG00000009035.16_0	chr15	-	3327	9	FSM	ENSMUSG00000009035.16	ENSMUST00000074991.10	3627	9	293	7	0	-6	multi-exon	FALSE	canonical	3	271	junction_8	29.0298876160415	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTCTTCTGCCTGCCAG	NA	False	NA	-10	True	AATAAA	-43	NA	79287476	79244890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79247086_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79261246_79261413_79262663_79262914_79287384
ENSMUSG00000009035.16_6	chr15	-	3347	10	FSM	ENSMUSG00000009035.16	ENSMUST00000228002.2	3315	10	-19	-13	1	-6	multi-exon	FALSE	canonical	3	23	junction_1	128.214615603374	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTCTTCTGCCTGCCAG	NA	False	NA	-10	True	AATAAA	-43	NA	79287475	79244890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79247086_79247857_79247879_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79261246_79261413_79262663_79262914_79287384
ENSMUSG00000009073.17_0	chr11	-	4460	16	NIC	ENSMUSG00000009073.17	novel	2394	17	NA	NA	4	-7	combination_of_known_junctions	FALSE	canonical	3	33	junction_14	87.5255899088312	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	9020	False	NA	-15	True	AATAAA	-14	NA	4799361	4715851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4770367_4770494_4798871
ENSMUSG00000009073.17_1	chr11	-	4633	17	FSM	ENSMUSG00000009073.17	ENSMUST00000056290.13	2394	17	-426	-1813	-46	-7	multi-exon	FALSE	canonical	3	247	junction_1	34.4219565648148	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	8970	False	NA	-15	True	AATAAA	-14	NA	4799411	4715851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
ENSMUSG00000009073.17_10	chr11	-	4504	16	NIC	ENSMUSG00000009073.17	novel	2394	17	NA	NA	-52	-7	combination_of_known_junctions	FALSE	canonical	3	63	junction_9	81.0748351147808	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	8964	False	NA	-15	True	AATAAA	-14	NA	4799417	4715851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
ENSMUSG00000009073.17_2	chr11	-	1808	1	ISM	ENSMUSG00000009073.17	ENSMUST00000109910.9	4720	16	81877	7	17448	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	NA	False	NA	-15	True	AATAAA	-14	NA	4717659	4715851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_4715900_4717700
ENSMUSG00000009073.17_7	chr11	-	4584	16	FSM	ENSMUSG00000009073.17	ENSMUST00000109910.9	4720	16	129	7	-42	-7	multi-exon	TRUE	canonical	3	105	junction_1	67.5504749551524	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	8974	False	NA	-15	True	AATAAA	-14	NA	4799407	4715851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4718274_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
ENSMUSG00000009075.3_0	chr11	-	2973	5	FSM	ENSMUSG00000009075.3	ENSMUST00000009219.3	2628	5	-355	10	-355	-10	multi-exon	FALSE	canonical	3	26	junction_3	5.21416340365355	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCGAAATGTCAGCCCT	7209	False	NA	-7	True	NA	NA	NA	4697133	4686901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4688949_4689123_4689278_4689553_4689667_4690368_4690513_4696618
ENSMUSG00000009076.11_0	chr11	+	777	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	canonical	3	287	junction_1	154.183786436836	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCTGGCCTGTCTCTCTT	NA	False	NA	12	True	TATAAA	-15	NA	4654682	4687668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009076.11_3	chr11	+	785	6	FSM	ENSMUSG00000009076.11	ENSMUST00000009220.5	792	6	6	1	6	-1	multi-exon	FALSE	canonical	3	156	junction_1	205.698225563567	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCTGGCCTGTCTCTCTT	NA	False	NA	12	True	TATAAA	-15	NA	4654683	4687668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4654722_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009079.17_0	chr11	-	2373	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	206	9	6	0	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	4546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTCATCCTCCTCC	NA	False	NA	-22	True	AATAAA	-14	NA	5049060	5019697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUSG00000009079.17_1	chr11	-	2376	17	NNC	ENSMUSG00000009079.17	novel	2588	17	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	1342	junction_9	1044.5656674397	1993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTCATCCTCCTCC	NA	False	NA	-22	True	AATAAA	-14	NA	5049060	5019697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029523_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUSG00000009090.18_0	chr11	+	3773	21	FSM	ENSMUSG00000009090.18	ENSMUST00000009234.16	4085	21	97	215	9	-153	multi-exon	FALSE	canonical	3	239	junction_7	27.5174490096738	663	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCATGCACATTTCTTCC	NA	False	NA	17	True	AATAAA	-17	NA	4936920	4992576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4937052_4959529_4959593_4962881_4962988_4965605_4965742_4966605_4966852_4968015_4968207_4969280_4969503_4973096_4973218_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990093_4990181_4990266_4990422_4991717
ENSMUSG00000009092.6_0	chr10	+	1320	7	FSM	ENSMUSG00000009092.6	ENSMUST00000009236.6	1321	7	-4	5	-4	-5	multi-exon	FALSE	canonical	2	8	junction_5	4.01732359773132	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTCTGACTCAATATG	NA	False	NA	NA	False	NA	NA	NA	75729242	75731770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_75729352_75729452_75729519_75729603_75729678_75729800_75729895_75730265_75730462_75730872_75730964_75731080
ENSMUSG00000009097.11_0	chr16	-	1833	7	FSM	ENSMUSG00000009097.11	ENSMUST00000232335.2	2511	7	-57	735	-57	-10	multi-exon	FALSE	canonical	1	1	junction_4	1.7950549357115	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATTGCCGGTGTGGCTAT	7683	False	NA	NA	False	CATAAA	-18	NA	18405776	18400463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18401207_18401473_18401575_18401656_18401725_18402168_18402325_18402833_18403006_18403784_18403887_18405285
ENSMUSG00000009112.5_0	chr6	+	3104	7	FSM	ENSMUSG00000009112.5	ENSMUST00000009256.4	6925	7	-20	3841	6	-3841	multi-exon	FALSE	canonical	3	188	junction_2	15.192286054296	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCACCAAGACCTGATGTT	NA	False	NA	8	True	AATAAA	-19	NA	120813178	120865962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_120813319_120825416_120825578_120839815_120839924_120842528_120842686_120847726_120847797_120853163_120853308_120863638
ENSMUSG00000009112.5_28	chr6	+	5329	1	ISM	ENSMUSG00000009112.5	ENSMUST00000009256.4	6925	7	51262	14	51262	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTTATGATAACTGGTG	NA	False	NA	3	True	AATAAA	-4	NA	120864460	120869789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_120864500_120869800
ENSMUSG00000009145.7_6	chr6	+	174	1	ISM	ENSMUSG00000009145.7	ENSMUST00000077502.5	3257	12	9012	289	8759	-289	mono-exon	FALSE	NA	NA	NA	NA	NA	2666	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	4557	False	NA	25	True	NA	NA	NA	83043836	83044010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_83043800_83044000
ENSMUSG00000009207.16_0	chr2	-	3250	14	FSM	ENSMUSG00000009207.16	ENSMUST00000111993.9	3321	14	18	53	1	-3	multi-exon	FALSE	canonical	3	34	junction_2	86.7381968506344	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATAAAAAGATGTGTTTA	NA	False	NA	-24	True	ATTAAA	-33	NA	74409274	74350687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_74352642_74358435_74358519_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ENSMUSG00000009207.16_10	chr2	-	1525	1	ISM	ENSMUSG00000009207.16	ENSMUST00000111993.9	3321	14	57062	71	11220	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTAGAATATAATCTTTT	NA	False	NA	-42	True	ATTAAA	-15	NA	74352230	74350705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_74350700_74352200
ENSMUSG00000009207.16_4	chr2	-	3150	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	18	27	1	-20	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAGAATATAATCTTTTT	NA	False	NA	-41	True	ATTAAA	-16	NA	74409274	74350704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ENSMUSG00000009207.16_6	chr2	-	3418	13	NIC	ENSMUSG00000009207.16	novel	3195	13	NA	NA	-4	-9	combination_of_known_junctions	FALSE	canonical	3	16	junction_12	69.9761864255739	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCTTTTTATAAAAAGATG	NA	False	NA	-30	True	ATTAAA	-27	NA	74409264	74350693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74408895
ENSMUSG00000009207.16_8	chr2	-	3112	12	FSM	ENSMUSG00000009207.16	ENSMUST00000134641.8	2120	12	-2	-990	-2	-2	multi-exon	FALSE	canonical	2	13	junction_8	78.2650719516906	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAAAAAGATGTGTTTAT	NA	False	NA	-23	True	ATTAAA	-34	NA	74409277	74350686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ENSMUSG00000009216.8_0	chr2	-	2930	3	FSM	ENSMUSG00000009216.8	ENSMUST00000151224.3	2959	3	24	5	24	-5	multi-exon	FALSE	canonical	1	1	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCATGGTGCGTGGCTGC	NA	False	NA	NA	False	AATAAA	-11	NA	27032479	27000396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_27002903_27003559_27003676_27032171
ENSMUSG00000009248.7_0	chr7	-	1619	3	FSM	ENSMUSG00000009248.7	ENSMUST00000009392.6	1605	3	-12	-2	-12	2	multi-exon	FALSE	canonical	3	20	junction_1	4	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGCAGTGCCTTGTACC	NA	False	NA	-7	True	TATAAA	-17	NA	142523013	142520563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_142521077_142521636_142522437_142522707
ENSMUSG00000009248.7_1	chr7	-	1207	2	ISM	ENSMUSG00000009248.7	ENSMUST00000009392.6	1605	3	671	-2	124	2	3prime_fragment	FALSE	canonical	3	20	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGCAGTGCCTTGTACC	NA	False	NA	-7	True	TATAAA	-17	NA	142522330	142520563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_142521077_142521636
ENSMUSG00000009291.14_0	chr10	+	2257	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	33	4	-3	-4	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTTGATTTCTTTGTT	1324	False	NA	28	True	AATAAA	-11	NA	77417586	77434562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
ENSMUSG00000009291.14_18	chr10	+	1418	1	ISM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	15592	3	4975	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGATTTCTTTGTTT	NA	False	NA	29	True	AATAAA	-12	NA	77433145	77434563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_77433100_77434600
ENSMUSG00000009293.18_0	chr10	+	1977	6	FSM	ENSMUSG00000009293.18	ENSMUST00000174510.8	2031	6	52	2	4	-2	multi-exon	FALSE	canonical	3	276	junction_5	14.0427917452336	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACAGTGTTGTGTGGTGCT	142	False	NA	3	True	AATAAA	-16	NA	77458160	77481825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77458251_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
ENSMUSG00000009293.18_9	chr10	+	1348	1	ISM	ENSMUSG00000009293.18	ENSMUST00000174510.8	2031	6	22371	0	3460	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTTGTGTGGTGCTCA	NA	False	NA	5	True	AATAAA	-18	NA	77480479	77481827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_77480500_77481800
ENSMUSG00000009376.16_0	chr6	+	6797	22	FSM	ENSMUSG00000009376.16	ENSMUST00000115443.8	6809	22	2	10	2	-10	multi-exon	FALSE	canonical	1	2	junction_15	4.2527835355745	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGAGTTGGCTGTA	21	True	NA	NA	False	AATAAA	-17	NA	17463800	17573969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_17464248_17487795_17487845_17491225_17492437_17513348_17513541_17526311_17526447_17527074_17527249_17531421_17531583_17533909_17534013_17534120_17534258_17534940_17535103_17535836_17535937_17540436_17540656_17546948_17547096_17548684_17548839_17549030_17549172_17553237_17553469_17555545_17555627_17558707_17558890_17562156_17562267_17563552_17563719_17571370_17571508_17571611
ENSMUSG00000009376.16_1	chr6	+	6686	21	NIC	ENSMUSG00000009376.16	novel	6809	22	NA	NA	-27	-9	combination_of_known_junctions	TRUE	canonical	2	2	junction_14	4.35057467468379	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGAGTTGGCTGTAG	-8	True	NA	NA	False	AATAAA	-18	NA	17463771	17573970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_17464248_17487795_17487845_17491225_17492437_17513348_17513541_17526311_17526447_17527074_17527249_17531421_17531583_17533909_17534013_17534120_17534258_17534940_17535103_17535836_17535937_17540436_17540656_17546948_17547096_17548684_17548839_17553237_17553469_17555545_17555627_17558707_17558890_17562156_17562267_17563552_17563719_17571370_17571508_17571611
ENSMUSG00000009376.16_10	chr6	+	5933	20	FSM	ENSMUSG00000009376.16	ENSMUST00000080469.12	4140	20	355	-2148	355	-9	multi-exon	FALSE	canonical	1	2	junction_13	4.2078939139593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGAGTTGGCTGTAG	324	False	NA	NA	False	AATAAA	-18	NA	17491594	17573970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_17492437_17513348_17513541_17526311_17526447_17527074_17527249_17531421_17531583_17533909_17534013_17534120_17534258_17534940_17535103_17535836_17535937_17540436_17540656_17546948_17547096_17548684_17548839_17549030_17549172_17553237_17553469_17555545_17555627_17558707_17558890_17562156_17562267_17563552_17563719_17571370_17571508_17571611
ENSMUSG00000009378.5_0	chr19	-	3911	7	FSM	ENSMUSG00000009378.5	ENSMUST00000009522.4	4051	7	137	3	137	-3	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATTTGGAACAATTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	34724552	34645805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_34648294_34649835_34650096_34652206_34652787_34654683_34654828_34657687_34657792_34668043_34668292_34724465
ENSMUSG00000009394.14_0	chr6	+	3802	11	FSM	ENSMUSG00000009394.14	ENSMUST00000203450.2	3806	11	3	1	3	-1	multi-exon	FALSE	canonical	0	0	junction_1	2.42693221990232	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAGTGTTAAGTTGTAAA	NA	False	NA	12	True	AATAAA	-18	NA	115111913	115253519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_115112422_115212974_115213033_115214215_115214308_115216319_115216477_115221106_115221197_115231123_115231187_115231550_115231694_115238615_115238691_115239482_115239586_115240792_115240943_115251156
ENSMUSG00000009394.14_1	chr6	+	2653	13	FSM	ENSMUSG00000009394.14	ENSMUST00000009538.12	2708	13	42	13	9	-13	multi-exon	FALSE	canonical	0	0	junction_1	2.49861072509416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTGATTCAGCCCTGA	NA	False	NA	NA	False	AATAAA	-17	NA	115111919	115258954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_115112422_115212974_115213033_115214215_115214308_115216319_115216477_115221106_115221197_115231123_115231187_115231550_115231694_115238615_115238691_115239482_115239586_115240792_115240943_115251156_115251218_115255061_115255315_115258048
ENSMUSG00000009406.14_0	chrX	-	2762	6	FSM	ENSMUSG00000009406.14	ENSMUST00000009550.14	3548	6	21	765	21	-765	multi-exon	FALSE	canonical	3	96	junction_1	13.1666244725062	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGCTGTTGGTATTTTTT	NA	False	NA	-5	True	AATATA	-20	NA	20816826	20800398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792_20808037_20816678
ENSMUSG00000009406.14_1	chrX	-	2442	5	ISM	ENSMUSG00000009406.14	ENSMUST00000009550.14	3548	6	8984	764	8984	-764	3prime_fragment	FALSE	canonical	3	96	junction_1	14.6372811683044	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGTTGGTATTTTTTT	NA	False	NA	-4	True	AATATA	-21	NA	20807863	20800397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792
ENSMUSG00000009418.17_11	chr1	-	4300	7	ISM	ENSMUSG00000009418.17	ENSMUST00000040599.15	12767	30	133059	3766	1611	502	3prime_fragment	FALSE	canonical	3	62	junction_2	9.54666899441312	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGACCTGATGTCTGTGC	NA	False	NA	-10	True	AATAAA	-25	NA	135380034	135366083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909
ENSMUSG00000009418.17_12	chr1	-	6446	28	NIC	ENSMUSG00000009418.17	novel	13117	30	NA	NA	27	-1993	combination_of_known_junctions	FALSE	canonical	3	28	junction_27	14.6067800932087	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTATTTCTATTTTT	NA	False	NA	-14	True	AATAAA	-19	NA	135513066	135368578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086_135460453_135464934_135465038_135512292
ENSMUSG00000009418.17_19	chr1	-	3408	19	NIC	ENSMUSG00000009418.17	novel	13117	30	NA	NA	1697	-2001	combination_of_known_junctions	FALSE	canonical	3	46	junction_17	13.2391348417495	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTTAAATTTTTATTT	NA	False	NA	-22	True	AATAAA	-11	NA	135393714	135368586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576
ENSMUSG00000009418.17_2	chr1	-	2290	1	ISM	ENSMUSG00000009418.17	ENSMUST00000040599.15	12767	30	144720	3766	13272	502	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGACCTGATGTCTGTGC	6910	False	NA	-10	True	AATAAA	-25	NA	135368373	135366083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_135366100_135368400
ENSMUSG00000009418.17_23	chr1	-	5450	26	NIC	ENSMUSG00000009418.17	novel	13117	30	NA	NA	-22151	-2000	combination_of_known_junctions	FALSE	canonical	3	42	junction_19	13.5294641431211	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTAAATTTTTATTTC	NA	False	NA	-21	True	AATAAA	-12	NA	135460340	135368585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086
ENSMUSG00000009418.17_28	chr1	-	4403	23	NIC	ENSMUSG00000009418.17	novel	13117	30	NA	NA	-3134	-1993	combination_of_known_junctions	FALSE	canonical	3	42	junction_19	13.6814406471621	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTATTTCTATTTTT	NA	False	NA	-14	True	AATAAA	-19	NA	135398545	135368578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217
ENSMUSG00000009418.17_33	chr1	-	10060	32	NIC	ENSMUSG00000009418.17	novel	9353	31	NA	NA	-51	485	combination_of_known_junctions	TRUE	canonical	2	5	junction_17	20.5943426962992	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTATTGGAGGCTGCTAAG	NA	False	NA	-27	True	AATAAA	-8	NA	135615894	135366100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135391652_135391677_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086_135460453_135464934_135465038_135512292_135513094_135530282_135530387_135534899_135535643_135615656
ENSMUSG00000009418.17_5	chr1	-	5072	12	ISM	ENSMUSG00000009418.17	ENSMUST00000040599.15	12767	30	130519	3774	-929	494	3prime_fragment	FALSE	canonical	3	48	junction_9	12.0034430322345	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTGCTAAGGGACCTGAT	NA	False	NA	-18	True	AATAAA	-17	NA	135382574	135366091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428
ENSMUSG00000009418.17_6	chr1	-	7535	31	NIC	ENSMUSG00000009418.17	novel	9353	31	NA	NA	-28	-1993	combination_of_known_junctions	FALSE	canonical	3	17	junction_28	16.8865495455867	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTATTTCTATTTTT	NA	False	NA	-14	True	AATAAA	-19	NA	135615871	135368578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086_135460453_135464934_135465038_135512292_135513094_135530282_135530387_135534899_135535643_135615656
ENSMUSG00000009418.17_7	chr1	-	5378	26	NIC	ENSMUSG00000009418.17	novel	13117	30	NA	NA	-1	-2000	combination_of_known_junctions	FALSE	canonical	2	3	junction_25	17.2810184885035	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTAAATTTTTATTTC	3364	False	NA	-21	True	AATAAA	-12	NA	135438123	135368585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135437941
ENSMUSG00000009418.17_8	chr1	-	3632	2	ISM	ENSMUSG00000009418.17	ENSMUST00000040599.15	12767	30	141522	3768	10074	500	3prime_fragment	FALSE	canonical	3	94	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGGGACCTGATGTCTGT	3712	False	NA	-12	True	AATAAA	-23	NA	135371571	135366085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_135369518_135371371
ENSMUSG00000009470.18_1	chr13	-	3863	1	ISM	ENSMUSG00000009470.18	ENSMUST00000109399.9	8445	24	48156	3	27439	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	534	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGACGTTGCACTCTTGAT	5211	False	NA	-10	True	AATAAA	-12	NA	98979392	98975529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_98975500_98979400
ENSMUSG00000009470.18_13	chr13	-	3534	24	NIC	ENSMUSG00000009470.18	novel	8445	24	NA	NA	-11	3155	combination_of_known_junctions	FALSE	canonical	3	224	junction_23	67.7519382879703	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCATGGTTGTACTTCT	NA	False	NA	-6	True	ATTAAA	-15	NA	99027533	98980410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027434
ENSMUSG00000009470.18_2	chr13	-	4366	24	FSM	ENSMUSG00000009470.18	ENSMUST00000109401.8	8453	24	42	4045	12	3994	multi-exon	TRUE	canonical	3	248	junction_23	63.8650810868555	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTAACCCTTTGCTCTTC	NA	False	NA	-13	True	AATAAA	-9	NA	99062850	98979571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99062758
ENSMUSG00000009470.18_3	chr13	-	3510	24	NIC	ENSMUSG00000009470.18	novel	8445	24	NA	NA	-8	3151	combination_of_known_junctions	TRUE	canonical	3	32	junction_23	102.017993890807	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATTTCATGGTTGTAC	NA	False	NA	-10	True	ATTAAA	-11	NA	99027530	98980414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027451
ENSMUSG00000009470.18_8	chr13	-	3416	24	FSM	ENSMUSG00000009470.18	ENSMUST00000109399.9	8445	24	12	5017	12	3022	multi-exon	FALSE	canonical	3	24	junction_23	103.521017838	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGAAGCACCCTGTGACAT	NA	False	NA	-16	True	AATAAA	-18	NA	99027536	98980543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027422
ENSMUSG00000009535.14_0	chr18	+	1992	12	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	-2	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	327.063064154123	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACACTGCAATTCTGAGA	NA	False	NA	84	True	AATAAA	-14	NA	68433460	68454974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454695_68454726
ENSMUSG00000009535.14_1	chr18	+	2024	11	FSM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	35	2949	-2	-3	multi-exon	FALSE	canonical	3	765	junction_7	139.06832852954	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACACTGCAATTCTGAGA	NA	False	NA	84	True	AATAAA	-14	NA	68433460	68454974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
ENSMUSG00000009535.14_51	chr18	+	1989	10	ISM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	5424	2949	782	-3	3prime_fragment	FALSE	canonical	3	765	junction_6	146.590889515307	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACACTGCAATTCTGAGA	NA	False	NA	84	True	AATAAA	-14	NA	68438849	68454974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
ENSMUSG00000009549.15_0	chr2	-	752	5	FSM	ENSMUSG00000009549.15	ENSMUST00000009693.15	798	5	45	1	-18	0	multi-exon	FALSE	canonical	3	1430	junction_1	23.7421039505769	430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGGTGGTTTGTTTTTCTT	NA	False	NA	-3	True	ATTAAA	-15	NA	118310147	118306331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310071
ENSMUSG00000009555.17_0	chr2	-	1699	7	FSM	ENSMUSG00000009555.17	ENSMUST00000009699.16	1733	7	28	6	1	0	multi-exon	FALSE	canonical	3	1063	junction_2	88.3259430870807	1227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAATGGCTGCGTTTCCT	NA	False	NA	NA	False	ATTAAA	-19	NA	32602768	32597455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32598302_32599478_32599628_32599784_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602576
ENSMUSG00000009555.17_6	chr2	-	1858	6	NIC	ENSMUSG00000009555.17	novel	1733	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	1092	junction_4	84.0514128376198	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAATGGCTGCGTTTCCT	NA	False	NA	NA	False	ATTAAA	-19	NA	32602770	32597455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32598302_32599478_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602576
ENSMUSG00000009563.17_0	chr2	+	1495	5	FSM	ENSMUSG00000009563.17	ENSMUST00000009707.14	1536	5	37	4	-5	-2	multi-exon	FALSE	canonical	3	200	junction_1	20.9105236663265	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACATTGACCAAAGTTTC	626	False	NA	5	True	AATAAA	-16	NA	32647282	32652252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32647463_32648682_32648949_32649538_32649715_32650600_32650729_32651507
ENSMUSG00000009563.17_1	chr2	+	2722	4	FSM	ENSMUSG00000009563.17	ENSMUST00000149720.3	2712	4	-12	2	4	-2	multi-exon	FALSE	canonical	3	233	junction_3	10.6562449087639	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACATTGACCAAAGTTTC	619	False	NA	5	True	AATAAA	-16	NA	32647275	32652252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32648949_32649538_32649715_32650600_32650729_32651507
ENSMUSG00000009563.17_4	chr2	+	1413	5	FSM	ENSMUSG00000009563.17	ENSMUST00000156617.8	915	5	12	-510	7	-2	multi-exon	FALSE	canonical	3	24	junction_1	95.4214336509361	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACATTGACCAAAGTTTC	622	False	NA	5	True	AATAAA	-16	NA	32647278	32652252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32647463_32648768_32648949_32649538_32649715_32650600_32650729_32651507
ENSMUSG00000009563.17_8	chr2	+	3290	3	NIC	ENSMUSG00000009563.17	novel	2712	4	NA	NA	7	-5	intron_retention	FALSE	canonical	3	233	junction_2	3	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAGAACATTGACCAAAGT	638	False	NA	2	True	AATAAA	-13	NA	32647294	32652249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32649715_32650600_32650729_32651507
ENSMUSG00000009563.17_9	chr2	+	4204	2	FSM	ENSMUSG00000009563.17	ENSMUST00000149987.2	716	2	-3040	-448	0	-5	multi-exon	FALSE	canonical	3	233	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAGAACATTGACCAAAGT	610	False	NA	2	True	AATAAA	-13	NA	32647266	32652249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32650729_32651507
ENSMUSG00000009566.13_1	chr2	-	2241	15	FSM	ENSMUSG00000009566.13	ENSMUST00000028148.11	2273	15	27	5	-23	-4	multi-exon	FALSE	canonical	3	280	junction_8	41.2442327446381	494	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGACTCCTATTCTCCTAG	NA	False	NA	-18	True	AATAAA	-15	NA	32584170	32572625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
ENSMUSG00000009569.15_0	chr16	+	5140	17	FSM	ENSMUSG00000009569.15	ENSMUST00000009713.14	5815	17	40	635	15	-635	multi-exon	FALSE	canonical	2	20	junction_16	15.0082008831838	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCCCTTCTATTGCTTTT	NA	False	NA	NA	False	AGTAAA	-19	NA	13074384	13232292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13074419_13082942_13083004_13144245_13144436_13196127_13196194_13197703_13197760_13199391_13199468_13202057_13202220_13203469_13203649_13212686_13212825_13216087_13216351_13217943_13218044_13218516_13219549_13221018_13221175_13223112_13223272_13223628_13223767_13227480_13227542_13230023
ENSMUSG00000009569.15_1	chr16	+	1483	7	ISM	ENSMUSG00000009569.15	ENSMUST00000009713.14	5815	17	19	29891	-6	-29891	5prime_fragment	FALSE	canonical	3	39	junction_6	10.2374584519575	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTACTCCGTTGAGAG	NA	False	NA	NA	False	AATAAA	-16	NA	13074363	13203036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_13074419_13082942_13083004_13144245_13144436_13196127_13196194_13197703_13197760_13199391_13199468_13202057
ENSMUSG00000009569.15_11	chr16	+	4596	11	ISM	ENSMUSG00000009569.15	ENSMUST00000149359.2	8295	15	25832	3103	25832	-637	3prime_fragment	FALSE	canonical	2	20	junction_10	8.58137518116997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTCCCTTCTATTGCTT	NA	False	NA	NA	False	AGTAAA	-17	NA	13202116	13232290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_13202220_13203469_13203649_13212686_13212825_13216087_13216351_13217943_13218044_13218516_13219549_13221018_13221175_13223112_13223272_13223628_13223767_13227480_13227542_13230023
ENSMUSG00000009569.15_13	chr16	+	6758	6	ISM	ENSMUSG00000009569.15	ENSMUST00000149359.2	8295	15	42386	4	42386	-4	3prime_fragment	FALSE	canonical	2	20	junction_5	6.01996677731696	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATTTTGTGTGTACAGAG	NA	False	NA	9	True	AATAAA	-18	NA	13218670	13235389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_13219549_13221018_13221175_13223112_13223272_13223628_13223767_13227480_13227542_13230023
ENSMUSG00000009569.15_15	chr16	+	3363	1	ISM	ENSMUSG00000009569.15	ENSMUST00000149359.2	8295	15	55741	5	55741	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTTTGTGTGTACAGA	NA	False	NA	8	True	AATAAA	-17	NA	13232025	13235388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_13232000_13235400
ENSMUSG00000009569.15_5	chr16	+	4014	16	ISM	ENSMUSG00000009569.15	ENSMUST00000009713.14	5815	17	47	4236	22	-4236	5prime_fragment	FALSE	canonical	2	22	junction_10	14.5961943289643	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAAAATCAGGCATGCA	NA	False	NA	NA	False	AATAAA	-6	NA	13074391	13228691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_13074419_13082942_13083004_13144245_13144436_13196127_13196194_13197703_13197760_13199391_13199468_13202057_13202220_13203469_13203649_13212686_13212825_13216087_13216351_13217943_13218044_13218516_13219549_13221018_13221175_13223112_13223272_13223628_13223767_13227480
ENSMUSG00000009569.15_8	chr16	+	3989	15	ISM	ENSMUSG00000009569.15	ENSMUST00000009713.14	5815	17	8596	4236	1	-4236	internal_fragment	FALSE	canonical	2	22	junction_9	15.0836105134828	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAAAATCAGGCATGCA	NA	False	NA	NA	False	AATAAA	-6	NA	13082940	13228691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_13083004_13144245_13144436_13196127_13196194_13197703_13197760_13199391_13199468_13202057_13202220_13203469_13203649_13212686_13212825_13216087_13216351_13217943_13218044_13218516_13219549_13221018_13221175_13223112_13223272_13223628_13223767_13227480
ENSMUSG00000009575.15_0	chr15	-	3715	1	ISM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	44549	9	20038	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	637	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGGATCTTGAGTGGT	NA	False	NA	-9	True	AATAAA	-13	NA	103103694	103099979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_103100000_103103700
ENSMUSG00000009575.15_1	chr15	-	8816	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	-24	11	-24	-11	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATATGGATCTTGAGTG	NA	False	NA	-11	True	AATAAA	-11	NA	103148267	103099981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
ENSMUSG00000009575.15_2	chr15	-	8919	6	NIC	ENSMUSG00000009575.15	novel	1146	6	NA	NA	-25	-9	combination_of_known_splicesites	FALSE	canonical	3	31	junction_5	201.842512865848	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGGATCTTGAGTGGT	NA	False	NA	-9	True	AATAAA	-13	NA	103148268	103099979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123448_103123549_103148159
ENSMUSG00000009585.19_12	chr15	+	1809	8	FSM	ENSMUSG00000009585.19	ENSMUST00000175752.8	1977	8	-16	184	-10	-4	multi-exon	FALSE	canonical	3	31	junction_4	224.554434107971	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAGACAAGATT	8275	False	NA	-10	True	NA	NA	NA	79776632	79792103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ENSMUSG00000009585.19_14	chr15	+	1899	9	FSM	ENSMUSG00000009585.19	ENSMUST00000175714.8	1953	9	38	16	-1	-4	multi-exon	FALSE	canonical	3	242	junction_5	144.740284648055	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAGACAAGATT	8284	False	NA	-10	True	NA	NA	NA	79776641	79792103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ENSMUSG00000009585.19_2	chr15	+	1936	9	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	-2	-4	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	219.175122618878	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAGACAAGATT	7500	False	NA	-10	True	NA	NA	NA	79775857	79792103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ENSMUSG00000009596.10_2	chrX	-	1935	13	FSM	ENSMUSG00000009596.10	ENSMUST00000009740.9	1933	13	-9	7	-9	-7	multi-exon	FALSE	canonical	3	9	junction_2	4.16999866773227	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCATGAAAACGTCTCT	NA	False	NA	NA	False	NA	NA	NA	133377248	133360873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371128_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
ENSMUSG00000009596.10_4	chrX	-	1837	13	NIC	ENSMUSG00000009596.10	novel	1933	13	NA	NA	-10	2	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	5.1010619809343	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACGTCTCTAATTTCTAA	NA	False	NA	NA	False	NA	NA	NA	133377249	133360864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371236_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
ENSMUSG00000009614.17_0	chr2	-	3126	17	ISM	ENSMUSG00000009614.17	ENSMUST00000102886.10	4521	21	7593	2	-6976	-2	3prime_fragment	FALSE	canonical	0	0	junction_1	0.3903123748999	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGTGTGGGGTACAGCA	NA	False	NA	NA	False	AATAAA	-19	NA	27129685	27078406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_27079657_27081890_27082027_27086660_27086830_27087540_27087704_27101022_27101117_27105049_27105198_27108809_27108924_27110654_27110794_27114980_27115095_27117088_27117173_27118255_27118398_27120449_27120541_27120782_27120870_27124302_27124433_27125489_27125595_27129378_27129480_27129626
ENSMUSG00000009621.19_2	chr2	-	1449	1	ISM	ENSMUSG00000009621.19	ENSMUST00000185188.8	5098	30	163359	1	8245	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGGTTAGCCTTCTGT	NA	False	NA	-3	True	AATAAA	-18	NA	27153565	27152116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_27152100_27153600
ENSMUSG00000009621.19_32	chr2	-	3320	24	ISM	ENSMUSG00000009621.19	ENSMUST00000056176.8	5221	28	-30	7481	-30	-4	5prime_fragment	FALSE	canonical	3	35	junction_20	9.98884065435761	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATACCTGGCCCCGTATT	NA	False	NA	NA	False	NA	NA	NA	27317075	27159596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_27160228_27161786_27161904_27163699_27163753_27165011_27165087_27167227_27167356_27168608_27168631_27169202_27169220_27171912_27172002_27172300_27172403_27173320_27173431_27175644_27175778_27176450_27176537_27178617_27178705_27181361_27181431_27181820_27181917_27182681_27182782_27186134_27186236_27187679_27187749_27189385_27189485_27192019_27192123_27208939_27209009_27226691_27226751_27276501_27276619_27316287
ENSMUSG00000009621.19_4	chr2	-	5240	28	FSM	ENSMUSG00000009621.19	ENSMUST00000056176.8	5221	28	-20	1	-20	-1	multi-exon	FALSE	canonical	1	3	junction_2	15.8636162645109	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGGTTAGCCTTCTGT	NA	False	NA	-3	True	AATAAA	-18	NA	27317065	27152116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_27154224_27157241_27157397_27158162_27158250_27158910_27159035_27160139_27160228_27161786_27161904_27163699_27163753_27165011_27165087_27167227_27167356_27168608_27168631_27169202_27169220_27171912_27172002_27172300_27172403_27173320_27173431_27175644_27175778_27176450_27176537_27178617_27178705_27181361_27181431_27181820_27181917_27182681_27182782_27186134_27186236_27187679_27187749_27189385_27189485_27192019_27192123_27208939_27209009_27226691_27226751_27276501_27276619_27316287
ENSMUSG00000009621.19_5	chr2	-	5124	27	NIC	ENSMUSG00000009621.19	novel	5221	28	NA	NA	9	-1	combination_of_known_splicesites	FALSE	canonical	3	35	junction_23	9.47466256756571	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGGTTAGCCTTCTGT	NA	False	NA	-3	True	AATAAA	-18	NA	27317036	27152116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_27154224_27157241_27157397_27158910_27159035_27160139_27160228_27161786_27161904_27163699_27163753_27165011_27165087_27167227_27167356_27168608_27168631_27169202_27169220_27171912_27172002_27172300_27172403_27173320_27173431_27175644_27175778_27176450_27176537_27178617_27178705_27181361_27181431_27181820_27181917_27182681_27182782_27186134_27186236_27187679_27187749_27189385_27189485_27192019_27192123_27208939_27209009_27226691_27226751_27276501_27276619_27316287
ENSMUSG00000009628.15_1	chr8	+	9382	11	NIC	ENSMUSG00000009628.15	novel	706	6	NA	NA	-2	-2	combination_of_known_splicesites	TRUE	canonical	3	10	junction_6	4.61410879802373	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATTTTTTGCCTACATG	NA	False	NA	5	True	AATAAA	-39	NA	34006763	34075608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_34006848_34017251_34017328_34029640_34029777_34036214_34036381_34047229_34047468_34053003_34053151_34055070_34055234_34060602_34067607_34068978_34069029_34071539_34072775_34075525
ENSMUSG00000009628.15_4	chr8	+	9430	11	NIC	ENSMUSG00000009628.15	novel	2626	11	NA	NA	-28	-2	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	5.53624421426656	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATTTTTTGCCTACATG	NA	False	NA	5	True	AATAAA	-39	NA	34007323	34075608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_34007456_34017251_34017328_34029640_34029777_34036214_34036381_34047229_34047468_34053003_34053151_34055070_34055234_34060602_34067607_34068978_34069029_34071539_34072775_34075525
ENSMUSG00000009628.15_6	chr8	+	5489	4	FSM	ENSMUSG00000009628.15	ENSMUST00000009772.8	8405	4	2914	2	2914	-2	multi-exon	FALSE	canonical	3	20	junction_3	1.63299316185545	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATTTTTTGCCTACATG	8845	False	NA	5	True	AATAAA	-39	NA	34063485	34075608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_34067607_34068978_34069029_34071539_34072775_34075525
ENSMUSG00000009628.15_7	chr8	+	1218	2	ISM	ENSMUSG00000009628.15	ENSMUST00000009772.8	8405	4	11072	-2	11072	2	3prime_fragment	FALSE	canonical	3	20	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTGCCTACATGTTTT	NA	False	NA	9	True	AATAAA	-43	NA	34071643	34075612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_34072775_34075525
ENSMUSG00000009630.11_0	chr8	+	1834	7	FSM	ENSMUSG00000009630.11	ENSMUST00000009774.11	1469	7	-14	-351	-14	351	multi-exon	FALSE	canonical	3	909	junction_3	33.4398298772919	1070	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAAAAACATTTTTTAAC	8851	False	NA	12	True	AATAAA	-12	NA	34089638	34109820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_34090047_34100682_34100893_34101775_34101950_34105477_34105568_34105693_34105856_34107054_34107174_34109149
ENSMUSG00000009633.4_0	chr1	-	778	2	FSM	ENSMUSG00000009633.4	ENSMUST00000009777.4	871	2	93	0	93	0	multi-exon	FALSE	canonical	3	79	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTATTTAATTCTTG	NA	False	NA	-1	True	AATAAA	-16	NA	192955432	192954468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_192955111_192955296
ENSMUSG00000009633.4_1	chr1	-	97	1	ISM	ENSMUSG00000009633.4	ENSMUST00000009777.4	871	2	959	1	959	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTCATTATTTAATTCTT	NA	False	NA	-2	True	AATAAA	-15	NA	192954566	192954469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_192954500_192954600
ENSMUSG00000009640.12_0	chr4	-	1527	11	FSM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	33	6	13	-1	multi-exon	FALSE	canonical	3	80	junction_10	49.3527101586124	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCTGATTGTTTCCTC	NA	False	NA	-41	True	AATAGA	-14	NA	117539437	117531883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539410
ENSMUSG00000009640.12_12	chr4	-	1741	10	NIC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	13	-1	intron_retention	FALSE	canonical	3	80	junction_9	52.0213631330651	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCTGATTGTTTCCTC	NA	False	NA	-41	True	AATAGA	-14	NA	117539437	117531883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539410
ENSMUSG00000009640.12_2	chr4	-	1513	10	ISM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	278	6	-12	-1	3prime_fragment	FALSE	canonical	3	219	junction_4	16.8259059521653	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCTGATTGTTTCCTC	NA	False	NA	-41	True	AATAGA	-14	NA	117539192	117531883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029
ENSMUSG00000009640.12_3	chr4	-	1542	11	NIC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	9	-1	combination_of_known_junctions	FALSE	canonical	3	72	junction_10	51.6295458047037	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCTGATTGTTTCCTC	NA	False	NA	-41	True	AATAGA	-14	NA	117539441	117531883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539410
ENSMUSG00000009647.14_1	chr10	-	1413	1	ISM	ENSMUSG00000009647.14	ENSMUST00000020312.13	2872	8	168294	2	9762	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATGGCATCTCGTTCTT	NA	False	NA	-3	True	AATAAA	-18	NA	59284220	59282807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_59282800_59284200
ENSMUSG00000009647.14_3	chr10	-	2855	8	FSM	ENSMUSG00000009647.14	ENSMUST00000020312.13	2872	8	15	2	-2	-2	multi-exon	FALSE	canonical	3	91	junction_7	16.9957977999605	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATGGCATCTCGTTCTT	5645	False	NA	-3	True	AATAAA	-18	NA	59452499	59282807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_59284681_59287027_59287145_59290767_59290972_59292470_59292632_59302275_59302381_59303447_59303619_59326908_59326979_59452345
ENSMUSG00000009670.12_0	chrX	-	3262	30	FSM	ENSMUSG00000009670.12	ENSMUST00000009814.10	3250	30	-12	0	-12	0	multi-exon	TRUE	canonical	3	57	junction_17	8.2193472636908	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCATTGATCAGCTGATT	NA	False	NA	-5	True	AATAAA	-16	NA	100103257	99882253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_99882667_99883306_99883472_99892654_99892776_99893874_99893984_99895431_99895582_99920141_99920215_99923582_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
ENSMUSG00000009670.12_9	chrX	-	3649	25	FSM	ENSMUSG00000009670.12	ENSMUST00000113716.3	2591	25	8	-1066	8	1066	multi-exon	FALSE	canonical	3	11	junction_1	14.9015286315047	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGGTTTTTAATTAATTC	NA	False	NA	NA	False	ATTAAA	-15	NA	100103265	99920421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_99921832_99923582_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
ENSMUSG00000009681.11_1	chr10	+	4698	23	FSM	ENSMUSG00000009681.11	ENSMUST00000164107.3	6839	23	2	2139	2	0	multi-exon	FALSE	canonical	3	29	junction_3	6.08751601555753	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGGGGGCCACAGCCAT	NA	False	NA	9	True	AATAAA	-18	NA	74896425	75018614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_74898143_74960855_74961029_74966852_74966958_74967330_74967517_74971725_74971834_74976821_74976883_74978913_74978967_74981153_74981295_74989717_74989840_74990729_74990899_74992909_74993030_74993841_74993918_74995617_74995723_74996161_74996237_75001876_75001975_75003938_75004071_75011108_75011169_75012174_75012285_75013715_75013856_75015955_75016091_75016966_75017073_75017400_75017564_75018071
ENSMUSG00000009681.11_12	chr10	+	3524	8	ISM	ENSMUSG00000009681.11	ENSMUST00000164107.3	6839	23	107513	6	-5860	-6	3prime_fragment	FALSE	canonical	3	29	junction_1	7.45325569185462	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTACTTCGGTTTGTGGT	NA	False	NA	9	True	ATTAAA	-9	NA	75003936	75020747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_75004071_75011108_75011169_75012174_75012285_75013715_75013856_75015955_75016091_75016966_75017073_75017400_75017564_75018071
ENSMUSG00000009681.11_2	chr10	+	2828	21	ISM	ENSMUSG00000009681.11	ENSMUST00000164107.3	6839	23	70428	2120	-29340	19	3prime_fragment	FALSE	canonical	3	29	junction_1	6.14084684713762	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTTTAGGTGGG	NA	False	NA	28	True	AATAAA	-37	NA	74966851	75018633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_74966958_74967330_74967517_74971725_74971834_74976821_74976883_74978913_74978967_74981153_74981295_74989717_74989840_74990729_74990899_74992909_74993030_74993841_74993918_74995617_74995723_74996161_74996237_75001876_75001975_75003938_75004071_75011108_75011169_75012174_75012285_75013715_75013856_75015955_75016091_75016966_75017073_75017400_75017564_75018071
ENSMUSG00000009681.11_3	chr10	+	2557	20	ISM	ENSMUSG00000009681.11	ENSMUST00000164107.3	6839	23	71053	2139	-28715	0	3prime_fragment	FALSE	canonical	3	29	junction_13	5.66663950892411	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGGGGGCCACAGCCAT	293	False	NA	9	True	AATAAA	-18	NA	74967476	75018614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_74967517_74971725_74971834_74976821_74976883_74978913_74978967_74981153_74981295_74989717_74989840_74990729_74990899_74992909_74993030_74993841_74993918_74995617_74995723_74996161_74996237_75001876_75001975_75003938_75004071_75011108_75011169_75012174_75012285_75013715_75013856_75015955_75016091_75016966_75017073_75017400_75017564_75018071
ENSMUSG00000009681.11_5	chr10	+	1980	14	ISM	ENSMUSG00000009681.11	ENSMUST00000164107.3	6839	23	94370	2127	-5398	12	3prime_fragment	FALSE	canonical	3	29	junction_7	6.13458524226981	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCATGTCCCTCTGTTT	NA	False	NA	21	True	AATAAA	-30	NA	74990793	75018626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_74990899_74992909_74993030_74993841_74993918_74995617_74995723_74996161_74996237_75001876_75001975_75003938_75004071_75011108_75011169_75012174_75012285_75013715_75013856_75015955_75016091_75016966_75017073_75017400_75017564_75018071
ENSMUSG00000009681.11_8	chr10	+	3393	7	ISM	ENSMUSG00000009681.11	ENSMUST00000218465.2	1460	8	1309	-2133	303	-6	3prime_fragment	FALSE	canonical	3	34	junction_1	6.47216261298253	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTACTTCGGTTTGTGGT	NA	False	NA	9	True	ATTAAA	-9	NA	75011105	75020747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_75011169_75012174_75012285_75013715_75013856_75015955_75016091_75016966_75017073_75017400_75017564_75018071
ENSMUSG00000009731.5_0	chrX	+	4796	7	NNC	ENSMUSG00000009731.5	novel	5287	6	NA	NA	-7	-591	intron_retention	FALSE	canonical	0	0	junction_5	11.1417632755722	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAGCATCTACTGACTC	NA	False	NA	NA	False	AATAAA	-20	NA	7688538	7703928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_7691203_7697410_7697574_7697670_7697755_7697840_7697940_7698331_7698583_7701719_7701831_7702504
ENSMUSG00000009731.5_1	chrX	+	4495	7	NIC	ENSMUSG00000009731.5	novel	5287	6	NA	NA	-8	-590	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	8.11890797254573	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGCATCTACTGACTCT	NA	False	NA	NA	False	AATAAA	-21	NA	7688519	7703929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7688630_7688839_7691203_7697410_7697574_7697670_7697755_7697840_7697940_7698331_7698583_7702504
ENSMUSG00000009731.5_10	chrX	+	1736	3	ISM	ENSMUSG00000009731.5	ENSMUST00000009875.5	5287	6	9351	591	9333	-591	3prime_fragment	FALSE	canonical	3	15	junction_2	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAGCATCTACTGACTC	675	False	NA	NA	False	AATAAA	-20	NA	7697878	7703928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_7697940_7698331_7698583_7702504
ENSMUSG00000009731.5_2	chrX	+	4668	6	FSM	ENSMUSG00000009731.5	ENSMUST00000009875.5	5287	6	33	586	15	-586	multi-exon	FALSE	canonical	3	15	junction_5	4.63033476111609	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTACTGACTCTGTGG	NA	False	NA	NA	False	AATAAA	-25	NA	7688560	7703933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7691203_7697410_7697574_7697670_7697755_7697840_7697940_7698331_7698583_7702504
ENSMUSG00000009731.5_3	chrX	+	3357	7	NNC	ENSMUSG00000009731.5	novel	5287	6	NA	NA	-14	-586	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	7.80313327381308	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTACTGACTCTGTGG	NA	False	NA	NA	False	AATAAA	-25	NA	7688513	7703933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_7688630_7689987_7691203_7697410_7697574_7697670_7697755_7697840_7697940_7698331_7698583_7702504
ENSMUSG00000009733.10_11	chr15	-	3206	16	NNC	ENSMUSG00000009733.10	novel	3302	16	NA	NA	12	-5	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_1	27.8291613639761	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGAGTTTTTGGTTCTTGT	NA	False	NA	-4	True	AATAAA	-17	NA	100449850	100400681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_100402322_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
ENSMUSG00000009733.10_2	chr15	-	3100	15	NIC	ENSMUSG00000009733.10	novel	3302	16	NA	NA	12	-7	combination_of_known_junctions	FALSE	canonical	2	10	junction_10	28.9275132081581	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGAGTTTTTGGTTCTT	NA	False	NA	-6	True	AATAAA	-15	NA	100449850	100400683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
ENSMUSG00000009733.10_36	chr15	-	1896	14	FSM	ENSMUSG00000009733.10	ENSMUST00000229581.2	1903	14	-11	18	-9	-18	multi-exon	FALSE	canonical	3	16	junction_1	28.5781395330696	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAATATCTTTATGCTTG	NA	False	NA	NA	False	ATTAAA	-22	NA	100449679	100407430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100407556_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205
ENSMUSG00000009733.10_7	chr15	-	3215	16	FSM	ENSMUSG00000009733.10	ENSMUST00000229696.2	3302	16	33	54	6	-5	multi-exon	FALSE	canonical	3	68	junction_1	18.9415475139235	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGAGTTTTTGGTTCTTGT	NA	False	NA	-4	True	AATAAA	-17	NA	100449856	100400681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
ENSMUSG00000009733.10_8	chr15	-	3452	15	ISM	ENSMUSG00000009733.10	ENSMUST00000229696.2	3302	16	222	56	1	-7	3prime_fragment	FALSE	canonical	3	68	junction_1	18.1805008799235	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGAGTTTTTGGTTCTT	NA	False	NA	-6	True	AATAAA	-15	NA	100449667	100400683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205
ENSMUSG00000009739.18_0	chr15	-	3648	2	FSM	ENSMUSG00000009739.18	ENSMUST00000177335.2	3654	2	7	-1	7	1	multi-exon	FALSE	canonical	3	66	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTCTCTGCCTATTTTGT	8513	False	NA	-2	True	AATAAA	-19	NA	100478105	100473200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100476500_100477756
ENSMUSG00000009739.18_2	chr15	-	2653	1	ISM	ENSMUSG00000009739.18	ENSMUST00000176271.9	4575	6	8393	2	2259	1	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTCTCTGCCTATTTTGT	4732	False	NA	-2	True	AATAAA	-19	NA	100475853	100473200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100473200_100475900
ENSMUSG00000009739.18_3	chr15	-	5016	11	NIC	ENSMUSG00000009739.18	novel	4953	11	NA	NA	-60	1	combination_of_known_junctions	FALSE	canonical	1	4	junction_2	17.0833252032501	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTCTCTGCCTATTTTGT	NA	False	NA	-2	True	AATAAA	-19	NA	100497925	100473200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_100476500_100477756_100477926_100478690_100478833_100481108_100481313_100481911_100482041_100483755_100484010_100484524_100484654_100485669_100485792_100489721_100489915_100491853_100491947_100497643
ENSMUSG00000009741.16_13	chr9	+	3517	16	FSM	ENSMUSG00000009741.16	ENSMUST00000009885.14	3742	16	215	10	215	-10	multi-exon	FALSE	canonical	3	95	junction_1	93.8633522142103	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTTTGTAAACGTGTCA	1517	False	NA	10	True	AATAAA	-10	NA	113760216	113806257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_113760288_113760596_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ENSMUSG00000009741.16_148	chr9	+	1361	1	ISM	ENSMUSG00000009741.16	ENSMUST00000084885.12	3850	17	44895	10	6604	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTTTGTAAACGTGTCA	1504	False	NA	10	True	AATAAA	-10	NA	113804896	113806257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_113804900_113806300
ENSMUSG00000009741.16_2	chr9	+	3539	16	NNC	ENSMUSG00000009741.16	novel	3742	16	NA	NA	214	-10	intron_retention	FALSE	canonical	3	42	junction_1	104.062673423279	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTTTGTAAACGTGTCA	1516	False	NA	10	True	AATAAA	-10	NA	113760215	113806257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_113760288_113760575_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ENSMUSG00000009741.16_4	chr9	+	3525	16	FSM	ENSMUSG00000009741.16	ENSMUST00000216558.2	1623	16	-283	-1619	-64	1	multi-exon	FALSE	canonical	3	224	junction_8	65.0003076915794	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTTGAATTCATTATC	1739	False	NA	18	True	AATAAA	-19	NA	113760438	113806070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ENSMUSG00000009741.16_5	chr9	+	3607	17	FSM	ENSMUSG00000009741.16	ENSMUST00000084885.12	3850	17	214	29	214	-29	multi-exon	TRUE	canonical	3	95	junction_1	91.3275141660497	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAATAAATGTTTTCTGA	1516	False	NA	-9	True	NA	NA	NA	113760215	113806238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_113760288_113760596_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ENSMUSG00000009741.16_6	chr9	+	3516	15	FSM	ENSMUSG00000009741.16	ENSMUST00000214095.2	2320	15	-43	-1153	-43	-77	multi-exon	FALSE	canonical	3	191	junction_7	65.0304481275769	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGGCACCAGCAGTCTG	1760	False	NA	-57	True	NA	NA	NA	113760459	113806190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ENSMUSG00000009741.16_8	chr9	+	3566	17	NNC	ENSMUSG00000009741.16	novel	3850	17	NA	NA	223	-13	intron_retention	FALSE	canonical	3	95	junction_1	91.3275141660497	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATTGTTTTGTAAACGTG	1525	False	NA	7	True	AATAAA	-7	NA	113760224	113806254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_113760288_113760644_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ENSMUSG00000009741.16_9	chr9	+	3471	16	NNC	ENSMUSG00000009741.16	novel	3742	16	NA	NA	220	-3	intron_retention	FALSE	canonical	3	95	junction_1	93.8633522142103	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAACGTGTCACTCATTT	1522	False	NA	17	True	AATAAA	-17	NA	113760221	113806264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_113760288_113760644_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
ENSMUSG00000009772.16_0	chr1	+	2899	7	FSM	ENSMUSG00000009772.16	ENSMUST00000082125.6	3107	7	2	206	2	-11	multi-exon	FALSE	canonical	3	25	junction_6	6.54896090146283	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGGAAAAACAGTCTCTT	NA	False	NA	NA	False	ATTAAA	-13	NA	132243865	132261020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_132244211_132252690_132252812_132255434_132255587_132255868_132255935_132257695_132257816_132258296_132258430_132259058
ENSMUSG00000009772.16_2	chr1	+	3692	5	ISM	ENSMUSG00000009772.16	ENSMUST00000072177.14	2936	8	10318	5	-1152	-5	3prime_fragment	FALSE	canonical	3	25	junction_4	7.15454401062709	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTCTCTTGTTCAC	NA	False	NA	NA	False	ATTAAA	-19	NA	132254181	132261026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_132255587_132255868_132255935_132257695_132257816_132258296_132258430_132259058
ENSMUSG00000009772.16_3	chr1	+	2175	3	ISM	ENSMUSG00000009772.16	ENSMUST00000072177.14	2936	8	13870	13	2400	-13	3prime_fragment	FALSE	canonical	3	25	junction_2	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAACTGGAAAAACAGTCTC	NA	False	NA	NA	False	ATTAAA	-11	NA	132257733	132261018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_132257816_132258296_132258430_132259058
ENSMUSG00000009772.16_4	chr1	+	1791	1	ISM	ENSMUSG00000009772.16	ENSMUST00000072177.14	2936	8	15371	6	3901	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAACAGTCTCTTGTTCA	NA	False	NA	NA	False	ATTAAA	-18	NA	132259234	132261025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_132259200_132261000
ENSMUSG00000009772.16_5	chr1	+	2017	2	ISM	ENSMUSG00000009772.16	ENSMUST00000072177.14	2936	8	14517	5	3047	-5	3prime_fragment	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTCTCTTGTTCAC	NA	False	NA	NA	False	ATTAAA	-19	NA	132258380	132261026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_132258430_132259058
ENSMUSG00000009828.16_1	chr9	+	2525	14	FSM	ENSMUSG00000009828.16	ENSMUST00000118869.8	2540	14	15	0	15	0	multi-exon	FALSE	canonical	2	4	junction_1	29.6118879054586	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGGTCTCATTATTT	NA	False	NA	3	True	TATAAA	-14	NA	78016488	78075220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_78016764_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
ENSMUSG00000009828.16_11	chr9	+	2144	13	ISM	ENSMUSG00000009828.16	ENSMUST00000118869.8	2540	14	22209	0	18086	0	3prime_fragment	FALSE	canonical	2	83	junction_11	11.2212595846753	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGGTCTCATTATTT	NA	False	NA	3	True	TATAAA	-14	NA	78038682	78075220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
ENSMUSG00000009828.16_3	chr9	+	2391	14	FSM	ENSMUSG00000009828.16	ENSMUST00000044551.8	6560	14	0	4169	0	0	multi-exon	FALSE	canonical	2	83	junction_12	10.9192842819834	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGGTCTCATTATTT	NA	False	NA	3	True	TATAAA	-14	NA	78020596	78075220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_78020738_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
ENSMUSG00000009863.15_2	chr4	+	952	8	FSM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	187	3	-11	-3	multi-exon	FALSE	canonical	3	2820	junction_2	205.868890316143	1214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGGCGTTACTCTCCAT	NA	False	NA	NA	False	AATAAA	-11	NA	140688700	140706501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
ENSMUSG00000009863.15_3	chr4	+	945	8	NNC	ENSMUSG00000009863.15	novel	1142	8	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	canonical	3	293	junction_1	1023.38288563579	96	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAGGCGTTACTCTCCA	NA	False	NA	NA	False	AATAAA	-10	NA	140688700	140706500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_140688788_140693811_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
ENSMUSG00000009894.16_0	chr11	-	1896	5	FSM	ENSMUSG00000009894.16	ENSMUST00000010038.10	1896	5	-14	14	-6	-4	multi-exon	FALSE	canonical	3	264	junction_2	15.4110350074224	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTACATCAGAGGAGCCGG	NA	False	NA	-11	True	NA	NA	NA	59340839	59297973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329340_59340740
ENSMUSG00000009894.16_1	chr11	-	1569	4	ISM	ENSMUSG00000009894.16	ENSMUST00000010038.10	1896	5	11714	14	9206	-4	3prime_fragment	FALSE	canonical	3	264	junction_2	16.7531091641721	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTACATCAGAGGAGCCGG	NA	False	NA	-11	True	NA	NA	NA	59329111	59297973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803
ENSMUSG00000009894.16_3	chr11	-	1899	5	NIC	ENSMUSG00000009894.16	novel	1896	5	NA	NA	-6	-4	combination_of_known_splicesites	TRUE	canonical	3	14	junction_4	118.239957290249	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTACATCAGAGGAGCCGG	NA	False	NA	-11	True	NA	NA	NA	59340839	59297973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329343_59340740
ENSMUSG00000009894.16_9	chr11	-	1945	6	NIC	ENSMUSG00000009894.16	novel	1896	5	NA	NA	-6	-5	combination_of_known_junctions	FALSE	canonical	3	14	junction_5	132.4259793243	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTACATCAGAGGAGCCG	NA	False	NA	-12	True	NA	NA	NA	59340839	59297974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329340_59333617_59333668_59340740
ENSMUSG00000009900.8_0	chr11	-	2833	4	FSM	ENSMUSG00000009900.8	ENSMUST00000010044.8	2761	4	-76	4	-76	-4	multi-exon	FALSE	canonical	0	0	junction_1	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAAGTTTGTGGTTTGTTCT	6098	False	NA	NA	False	AGTAAA	-15	NA	59181654	59138862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59140936_59147105_59147372_59165965_59166208_59181402
ENSMUSG00000009905.6_0	chr1	-	2020	10	FSM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	50	3448	6	-3448	multi-exon	FALSE	canonical	3	165	junction_2	12.4017123469222	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCATGACCTTCTTACT	8311	False	NA	NA	False	AATAAA	-7	NA	106687407	106651636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173_106683264_106687273
ENSMUSG00000009905.6_1	chr1	-	2371	1	ISM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	35564	1334	35520	-1334	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTAGACTGTTGTTGT	NA	False	NA	NA	False	ATTAAA	-34	NA	106651893	106649522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_106649500_106651900
ENSMUSG00000009907.18_2	chr1	-	2816	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	84	1733	23	-1733	multi-exon	TRUE	canonical	3	455	junction_4	35.0793386482699	811	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTACTTTTGGCTTTTAT	108	False	NA	-7	True	AGTAAA	-8	NA	106724374	106698892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
ENSMUSG00000009927.10_0	chr9	+	485	5	FSM	ENSMUSG00000009927.10	ENSMUST00000080300.9	1280	5	557	238	1	0	multi-exon	FALSE	canonical	3	5317	junction_4	3059.10970504492	1485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGGGTGCATCTGT	NA	False	NA	89	True	AATAAA	-14	NA	44318992	44321486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
ENSMUSG00000009927.10_15	chr9	+	298	3	ISM	ENSMUSG00000009927.10	ENSMUST00000215610.2	703	4	998	9	700	-4	3prime_fragment	FALSE	canonical	3	5317	junction_2	3969	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAAATGAATGGGTGCAT	NA	False	NA	85	True	AATAAA	-10	NA	44320007	44321482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44320167_44321250_44321350_44321442
ENSMUSG00000009941.11_0	chrX	-	2359	22	FSM	ENSMUSG00000009941.11	ENSMUST00000010085.4	2393	22	33	1	33	-1	multi-exon	FALSE	canonical	3	19	junction_3	6.66632652193486	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTATGTCTTGAAGTGC	NA	False	NA	-3	True	AATAAA	-17	NA	133865470	133845277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133845538_133845640_133845702_133850435_133850634_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
ENSMUSG00000009941.11_1	chrX	-	2345	22	FSM	ENSMUSG00000009941.11	ENSMUST00000113189.8	2375	22	30	0	30	0	multi-exon	TRUE	canonical	3	15	junction_3	7.21770310384392	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATGTCTTGAAGTGCT	NA	False	NA	-2	True	AATAAA	-18	NA	133865473	133845276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133845538_133845640_133845702_133850435_133850616_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
ENSMUSG00000009995.18_11	chrX	+	2562	7	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	1	-1	intron_retention	FALSE	canonical	3	226	junction_5	12.5266382827424	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATACCTCTGTCTTCTGTGT	NA	False	NA	6	True	AATAAA	-19	NA	73326356	73333753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73332789_73332904
ENSMUSG00000009995.18_12	chrX	+	1791	10	FSM	ENSMUSG00000009995.18	ENSMUST00000069722.13	1851	10	54	6	1	-3	multi-exon	FALSE	canonical	3	70	junction_7	76.3282385490455	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATACCTCTGTCTTCTGT	NA	False	NA	4	True	AATAAA	-17	NA	73326356	73333751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332267_73332321_73332710_73332789_73332904
ENSMUSG00000009995.18_13	chrX	+	2473	8	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	-4	0	intron_retention	FALSE	canonical	3	76	junction_6	61.4664335143954	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326361	73333754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73332626_73332710_73332789_73332904
ENSMUSG00000009995.18_15	chrX	+	1741	9	FSM	ENSMUSG00000009995.18	ENSMUST00000114182.11	750	9	-331	-660	1	-3	multi-exon	FALSE	canonical	3	23	junction_6	86.9927259890159	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATACCTCTGTCTTCTGT	NA	False	NA	4	True	AATAAA	-17	NA	73326356	73333751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332053_73332120_73332710_73332789_73332904
ENSMUSG00000009995.18_19	chrX	+	2247	9	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	1	0	intron_retention	FALSE	canonical	3	76	junction_7	67.3163009604657	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326356	73333754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332626_73332710_73332789_73332904
ENSMUSG00000009995.18_24	chrX	+	2678	6	ISM	ENSMUSG00000009995.18	ENSMUST00000124200.8	1742	9	1	1	1	-1	intron_retention	FALSE	canonical	3	226	junction_5	12.5123938556936	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATACCTCTGTCTTCTGTGT	NA	False	NA	6	True	AATAAA	-19	NA	73326356	73333753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783
ENSMUSG00000009995.18_33	chrX	+	1794	10	FSM	ENSMUSG00000009995.18	ENSMUST00000114180.11	1786	10	-11	3	1	-3	multi-exon	FALSE	canonical	3	23	junction_6	91.4165611600053	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATACCTCTGTCTTCTGT	NA	False	NA	4	True	AATAAA	-17	NA	73326356	73333751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332053_73332120_73332267_73332321_73332710_73332789_73332904
ENSMUSG00000009995.18_34	chrX	+	2410	8	NIC	ENSMUSG00000009995.18	novel	1786	10	NA	NA	-4	0	intron_retention	FALSE	canonical	3	70	junction_6	63.5295206970744	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326361	73333754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73332120_73332267_73332789_73332904
ENSMUSG00000009995.18_9	chrX	+	1738	9	FSM	ENSMUSG00000009995.18	ENSMUST00000124200.8	1742	9	1	3	1	-3	multi-exon	FALSE	canonical	3	81	junction_7	66.075241202738	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATACCTCTGTCTTCTGT	NA	False	NA	4	True	AATAAA	-17	NA	73326356	73333751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332710_73332789_73332904
ENSMUSG00000010025.20_1	chr11	-	3043	10	FSM	ENSMUSG00000010025.20	ENSMUST00000074127.14	3091	10	43	5	-15	-5	multi-exon	FALSE	canonical	3	69	junction_1	16.3435342295084	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTATTGTGTGTTAAT	1376	False	NA	NA	False	AATAAA	-9	NA	61157968	61135683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
ENSMUSG00000010025.20_7	chr11	-	3161	11	NIC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	-20	-5	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	38.2758409443868	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTATTGTGTGTTAAT	1371	False	NA	NA	False	AATAAA	-9	NA	61157973	61135683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_61137148_61138754_61138868_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
ENSMUSG00000010045.3_0	chr9	+	2054	2	FSM	ENSMUSG00000010045.3	ENSMUST00000010189.3	2194	2	114	26	114	-26	multi-exon	FALSE	canonical	3	142	junction_1	0	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTGGCTCCTGGGCTCC	NA	False	NA	7	True	AATAAA	-12	NA	107411257	107415846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107412529_107415063
ENSMUSG00000010047.13_1	chr9	+	1871	4	FSM	ENSMUSG00000010047.13	ENSMUST00000010191.13	1893	4	7	15	7	-11	multi-exon	FALSE	canonical	3	208	junction_3	7.31816613336672	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAACAACTCCTGTGCTT	NA	False	NA	0	True	ATTAAA	-2	NA	107446322	107449960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107446433_107447302_107448270_107448690_107448781_107449256
ENSMUSG00000010047.13_12	chr9	+	1823	4	NIC	ENSMUSG00000010047.13	novel	544	2	NA	NA	-25	-9	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	100.360461448831	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAACTCCTGTGCTTCT	NA	False	NA	2	True	ATTAAA	-4	NA	107446568	107449962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107446629_107447302_107448270_107448690_107448781_107449256
ENSMUSG00000010047.13_3	chr9	+	2737	3	NIC	ENSMUSG00000010047.13	novel	1893	4	NA	NA	7	-15	intron_retention	FALSE	canonical	3	208	junction_2	7.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAAACAACTCCTGT	NA	False	NA	-4	True	NA	NA	NA	107446322	107449956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107448270_107448690_107448781_107449256
ENSMUSG00000010048.11_0	chr9	+	1959	12	FSM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	86	11	2	-11	multi-exon	TRUE	canonical	3	631	junction_11	35.5716016363504	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTAGCCCCCTGTGGCCTT	NA	False	NA	10	True	ATTAAA	-22	NA	107464926	107470226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ENSMUSG00000010048.11_3	chr9	+	2058	11	ISM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	88	13	4	-13	intron_retention	FALSE	canonical	3	651	junction_3	29.3468908063529	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTAGCCCCCTGTGGCC	NA	False	NA	8	True	ATTAAA	-20	NA	107464928	107470224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474
ENSMUSG00000010051.16_0	chr9	+	2987	4	FSM	ENSMUSG00000010051.16	ENSMUST00000010195.14	3014	4	6	21	6	-21	multi-exon	FALSE	canonical	3	13	junction_3	10.4029910228848	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCTGCCCGTTTATCCA	NA	False	NA	10	True	NA	NA	NA	107454162	107458156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298
ENSMUSG00000010051.16_1	chr9	+	4254	2	ISM	ENSMUSG00000010051.16	ENSMUST00000112387.9	2706	5	20	36	9	0	intron_retention	FALSE	canonical	3	34	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	107454145	107458873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107454278_107454751
ENSMUSG00000010051.16_10	chr9	+	2356	3	ISM	ENSMUSG00000010051.16	ENSMUST00000010195.14	3014	4	1104	28	1072	-28	3prime_fragment	FALSE	canonical	3	13	junction_2	11.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTCACATGCTGCCCGT	NA	False	NA	3	True	NA	NA	NA	107455260	107458149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107455676_107456079_107456170_107456298
ENSMUSG00000010051.16_11	chr9	+	3518	4	NIC	ENSMUSG00000079334.9	novel	1552	4	NA	NA	-775	-7	intron_retention	FALSE	canonical	3	8	junction_3	12.1928941054479	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATGGCTGTGACAGTTT	NA	False	NA	5	True	AATAAA	-11	NA	107455310	107461242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107455676_107456079_107456170_107456298_107458135_107460015
ENSMUSG00000010051.16_3	chr9	+	2365	4	NIC	ENSMUSG00000010051.16	novel	2706	5	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	16.5193489244852	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	107454144	107458873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107454278_107454751_107455676_107456079_107456170_107457655
ENSMUSG00000010051.16_4	chr9	+	1924	5	FSM	ENSMUSG00000010051.16	ENSMUST00000112387.9	2706	5	22	760	-9	-28	multi-exon	FALSE	canonical	2	4	junction_4	13.6450540489952	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTCACATGCTGCCCGT	NA	False	NA	3	True	NA	NA	NA	107454147	107458149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298_107456585_107457655
ENSMUSG00000010051.16_5	chr9	+	1997	5	NIC	ENSMUSG00000010051.16	novel	2706	5	NA	NA	6	5642	combination_of_known_splicesites	FALSE	canonical	2	6	junction_3	13.8089644796415	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAAGTTTGTCCTCACC	NA	False	NA	10	True	CATAAA	-15	NA	107454162	107464551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107454278_107454751_107455676_107456079_107456170_107463580_107463671_107463773
ENSMUSG00000010051.16_6	chr9	+	4203	5	NIC	ENSMUSG00000010051.16	novel	3014	4	NA	NA	-3	2335	intron_retention	FALSE	canonical	3	8	junction_4	12.3970762682174	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGGCTGTGACAGTTTAT	NA	False	NA	7	True	AATAAA	-13	NA	107454153	107461244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298_107458135_107460015
ENSMUSG00000010054.5_0	chr9	+	1651	3	FSM	ENSMUSG00000010054.5	ENSMUST00000010198.5	1665	3	12	2	12	-2	multi-exon	FALSE	canonical	3	242	junction_1	4.5	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGAGAGTGGCGTCCAG	NA	False	NA	18	True	AATAAA	-19	NA	107440465	107443309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107440732_107441774_107441896_107442045
ENSMUSG00000010057.9_1	chr9	+	1427	11	FSM	ENSMUSG00000010057.9	ENSMUST00000010201.9	1441	11	11	3	-4	-3	multi-exon	FALSE	canonical	3	98	junction_4	11.6721891691319	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATTGAGTACTGCTTCA	NA	False	NA	10	True	AATAAA	-21	NA	107419435	107422902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107421834_107421945_107422040_107422112_107422231_107422443_107422587_107422689
ENSMUSG00000010057.9_20	chr9	+	1621	10	NIC	ENSMUSG00000010057.9	novel	1441	11	NA	NA	3	0	intron_retention	FALSE	canonical	3	98	junction_4	12.0102836594415	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTGTGGAATATTGAGTA	NA	False	NA	2	True	AATAAA	-13	NA	107419446	107422894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107421834_107421945_107422040_107422112_107422587_107422689
ENSMUSG00000010057.9_3	chr9	+	1758	9	FSM	ENSMUSG00000010057.9	ENSMUST00000193628.6	1736	9	-18	-4	1	4	multi-exon	FALSE	canonical	3	98	junction_4	11.1235954169504	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAATATTGAGTACTGC	NA	False	NA	6	True	AATAAA	-17	NA	107419425	107422898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107422040_107422112_107422587_107422689
ENSMUSG00000010057.9_8	chr9	+	1526	10	NIC	ENSMUSG00000010057.9	novel	1441	11	NA	NA	6	-2	intron_retention	FALSE	canonical	3	98	junction_4	10.6770782520313	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTGAGTACTGCTTCAG	NA	False	NA	11	True	AATAAA	-22	NA	107419449	107422903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107422040_107422112_107422231_107422443_107422587_107422689
ENSMUSG00000010066.16_1	chr9	+	5542	38	NIC	ENSMUSG00000010066.16	novel	5807	39	NA	NA	-26	-2	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_9	2.18568287774657	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACCAGTTTCTATCCAC	NA	False	NA	NA	False	ATTAAA	-20	NA	107277052	107406540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107277483_107303251_107303334_107342751_107342869_107374658_107374719_107383146_107383192_107386393_107386536_107389199_107389332_107389501_107389560_107390252_107390304_107390431_107390532_107390671_107390831_107391033_107391142_107391243_107391323_107391830_107391881_107392058_107392149_107392349_107392422_107392617_107392693_107394293_107394369_107394449_107394522_107394611_107394684_107394789_107394852_107395391_107395469_107399321_107399383_107401293_107401392_107401596_107401688_107401810_107401874_107402029_107402134_107402355_107402455_107402542_107402632_107402811_107402860_107403099_107403172_107403261_107403415_107403541_107403595_107403683_107403740_107403886_107404014_107404135_107404246_107404346_107404436_107404519
ENSMUSG00000010066.16_3	chr9	+	3504	15	ISM	ENSMUSG00000010066.16	ENSMUST00000085092.12	5183	39	123978	-348	2346	-2	3prime_fragment	FALSE	canonical	0	0	junction_2	3.03466368374971	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACCAGTTTCTATCCAC	1003	False	NA	NA	False	ATTAAA	-20	NA	107401056	107406540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107401392_107401596_107401688_107401810_107401874_107402029_107402134_107402355_107402455_107402542_107402632_107402811_107402860_107403099_107403172_107403261_107403415_107403541_107403595_107403683_107403740_107403886_107404014_107404135_107404246_107404352_107404436_107404519
ENSMUSG00000010066.16_6	chr9	+	1692	1	ISM	ENSMUSG00000010066.16	ENSMUST00000010210.13	5783	38	128040	0	995	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGTTTCTATCCACTG	4797	False	NA	NA	False	ATTAAA	-22	NA	107404850	107406542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107404800_107406500
ENSMUSG00000010067.14_0	chr9	+	1823	6	FSM	ENSMUSG00000010067.14	ENSMUST00000093786.9	1787	6	-47	11	-47	-7	multi-exon	FALSE	canonical	1	1	junction_1	27.6723688902848	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTCTGGTTTTGGACT	NA	False	NA	2	True	AATAAA	-9	NA	107428706	107439455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107429046_107431336_107431444_107434651_107434757_107434968_107435267_107435385_107435502_107438597
ENSMUSG00000010067.14_2	chr9	+	1584	5	FSM	ENSMUSG00000010067.14	ENSMUST00000010211.7	1727	5	140	3	140	-3	multi-exon	FALSE	canonical	3	50	junction_4	9.63068014212911	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTTTGGACTCTAT	NA	False	NA	6	True	AATAAA	-13	NA	107431921	107439459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107432125_107434651_107434757_107434968_107435267_107435385_107435502_107438597
ENSMUSG00000010067.14_3	chr9	+	4116	4	FSM	ENSMUSG00000010067.14	ENSMUST00000144129.2	2094	4	-2025	3	135	-3	multi-exon	FALSE	canonical	3	50	junction_3	6.53197264742181	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTTTGGACTCTAT	NA	False	NA	6	True	AATAAA	-13	NA	107431916	107439459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107434757_107434968_107435267_107435385_107435502_107438597
ENSMUSG00000010067.14_5	chr9	+	811	1	ISM	ENSMUSG00000010067.14	ENSMUST00000093786.9	1787	6	9897	5	3510	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTTTTGGACTCTATAG	NA	False	NA	8	True	AATAAA	-15	NA	107438650	107439461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107438600_107439500
ENSMUSG00000010095.14_2	chr19	-	1856	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	9	-46	9	16	multi-exon	FALSE	canonical	3	2610	junction_8	198.183902915953	2520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGATTGTGACTTTCATC	NA	False	NA	-5	True	AATAAA	-18	NA	8691234	8684934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
ENSMUSG00000010095.14_4	chr19	-	2016	10	FSM	ENSMUSG00000010095.14	ENSMUST00000170157.8	2813	10	108	689	-63	16	multi-exon	FALSE	canonical	3	190	junction_9	923.220423635268	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGATTGTGACTTTCATC	9137	False	NA	-5	True	AATAAA	-18	NA	8700625	8684934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8700347
ENSMUSG00000010095.14_5	chr19	-	1401	8	FSM	ENSMUSG00000010095.14	ENSMUST00000206598.2	1393	8	8	-16	8	16	multi-exon	FALSE	canonical	3	2940	junction_7	103.964868477534	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGATTGTGACTTTCATC	NA	False	NA	-5	True	AATAAA	-18	NA	8690341	8684934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
ENSMUSG00000010097.16_0	chr19	+	4041	20	FSM	ENSMUSG00000010097.16	ENSMUST00000184970.9	4042	20	3	-2	3	2	multi-exon	FALSE	canonical	3	621	junction_4	65.017278760312	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTGTCCCATTACTGG	8606	False	NA	34	True	GATAAA	-13	NA	8734473	8748273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
ENSMUSG00000010097.16_1	chr19	+	2269	21	FSM	ENSMUSG00000010097.16	ENSMUST00000010241.14	2326	21	44	13	-2	2	multi-exon	FALSE	canonical	3	621	junction_4	71.7857924661976	890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTGTCCCATTACTGG	8613	False	NA	34	True	GATAAA	-13	NA	8734480	8748273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
ENSMUSG00000010110.18_0	chr19	+	1796	11	FSM	ENSMUSG00000010110.18	ENSMUST00000176381.8	2251	11	27	428	27	-1	multi-exon	FALSE	canonical	3	140	junction_1	18.8417090519942	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGTGTTGATGTCATTTC	6576	False	NA	11	True	NA	NA	NA	8718803	8733005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUSG00000010110.18_14	chr19	+	1994	11	NIC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	14	-1	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	55.2485293921929	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGTGTTGATGTCATTTC	6957	False	NA	11	True	NA	NA	NA	8719184	8733005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_8719519_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUSG00000010110.18_3	chr19	+	2067	10	FSM	ENSMUSG00000010110.18	ENSMUST00000073430.14	2112	10	44	1	40	-1	multi-exon	FALSE	canonical	3	190	junction_5	5.51764845241562	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGTGTTGATGTCATTTC	6983	False	NA	11	True	NA	NA	NA	8719210	8733005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUSG00000010122.15_0	chr11	-	2632	17	FSM	ENSMUSG00000010122.15	ENSMUST00000010267.10	2639	17	3	4	3	-3	multi-exon	FALSE	canonical	2	6	junction_16	9.25675429078681	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTCTGGGCTGTAGATT	NA	False	NA	-5	True	ATTAAA	-14	NA	61268904	61234230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61235355_61239484_61239558_61240270_61240366_61243487_61243621_61243891_61243962_61250177_61250254_61250345_61250455_61253512_61253581_61253652_61253767_61253848_61253947_61254219_61254318_61258498_61258544_61260076_61260120_61260943_61261093_61262581_61262651_61264180_61264283_61268738
ENSMUSG00000010122.15_10	chr11	-	2069	10	ISM	ENSMUSG00000010122.15	ENSMUST00000131723.8	2987	18	14835	3	2423	-3	3prime_fragment	FALSE	canonical	3	26	junction_5	4.64545443563708	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTCTGGGCTGTAGATT	NA	False	NA	-5	True	ATTAAA	-14	NA	61254055	61234230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_61235355_61239484_61239558_61240270_61240366_61243487_61243621_61243891_61243962_61250177_61250254_61250345_61250455_61253512_61253581_61253652_61253767_61253848
ENSMUSG00000010142.13_1	chr11	+	2170	3	FSM	ENSMUSG00000010142.13	ENSMUST00000137832.8	764	3	23	-1429	-15	-10	multi-exon	FALSE	canonical	1	2	junction_1	4.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACTTGCATACAGTATG	NA	False	NA	NA	False	AATAAA	-21	NA	61033309	61040188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_61033356_61037666_61037844_61038241
ENSMUSG00000010142.13_3	chr11	+	2124	2	ISM	ENSMUSG00000010142.13	ENSMUST00000123378.2	662	3	4176	-1603	4176	-10	3prime_fragment	FALSE	canonical	2	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACTTGCATACAGTATG	NA	False	NA	NA	False	AATAAA	-21	NA	61037666	61040188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_61037844_61038241
ENSMUSG00000010154.8_0	chr8	+	2337	15	FSM	ENSMUSG00000010154.8	ENSMUST00000010298.7	2330	15	-8	1	-8	-1	multi-exon	FALSE	canonical	3	49	junction_7	8.26752930544105	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATACATTGTCTCTTTCC	NA	False	NA	17	True	NA	NA	NA	124059443	124096253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124059760_124073378_124073423_124080757_124081115_124083261_124083340_124083452_124083618_124084381_124084469_124084848_124084973_124086080_124086251_124086811_124087002_124087988_124088105_124089757_124089893_124090061_124090130_124093574_124093603_124095416_124095533_124095910
ENSMUSG00000010154.8_2	chr8	+	2308	14	NIC	ENSMUSG00000010154.8	novel	2330	15	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	20.1212302140163	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATACATTGTCTCTTTCCC	NA	False	NA	18	True	NA	NA	NA	124059429	124096254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_124059760_124080757_124081115_124083261_124083340_124083452_124083618_124084381_124084469_124084848_124084973_124086080_124086251_124086811_124087002_124087988_124088105_124089757_124089893_124090061_124090130_124093574_124093603_124095416_124095533_124095910
ENSMUSG00000010154.8_3	chr8	+	2887	14	NIC	ENSMUSG00000010154.8	novel	2330	15	NA	NA	0	-4	intron_retention	FALSE	canonical	3	49	junction_7	8.53811503108407	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATATACATTGTCTCTT	NA	False	NA	14	True	NA	NA	NA	124059451	124096250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_124059760_124073378_124073423_124080757_124081115_124083261_124083340_124083452_124083618_124084381_124084469_124084848_124084973_124086080_124087002_124087988_124088105_124089757_124089893_124090061_124090130_124093574_124093603_124095416_124095533_124095910
ENSMUSG00000010277.8_1	chr11	+	7380	39	FSM	ENSMUSG00000010277.8	ENSMUST00000010421.7	7443	39	19	44	19	-44	multi-exon	FALSE	canonical	3	514	junction_1	88.3718730713483	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGGCCTTTTTTAATTG	NA	False	NA	-23	True	AAAAAG	-30	NA	78152596	78181405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78152744_78153524_78153655_78154415_78154466_78154737_78154886_78155289_78155409_78156004_78156066_78156398_78156589_78157176_78157301_78157420_78157546_78157761_78157830_78157922_78158069_78158924_78159044_78159151_78159316_78159464_78159724_78160313_78160520_78162116_78163210_78163603_78163796_78163922_78164126_78164266_78164386_78164507_78164729_78165290_78165482_78165613_78165714_78165832_78166036_78167865_78168161_78169872_78170031_78170534_78170742_78173884_78173985_78174925_78175109_78175564_78175687_78176263_78176420_78176500_78176623_78177338_78177520_78178121_78178209_78178509_78178621_78178757_78178894_78178990_78179122_78179766_78179869_78180111_78180247_78180629
ENSMUSG00000010277.8_105	chr11	+	4761	24	ISM	ENSMUSG00000010277.8	ENSMUST00000010421.7	7443	39	10102	44	-117	-44	3prime_fragment	FALSE	canonical	3	553	junction_1	81.5165563569908	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGGCCTTTTTTAATTG	NA	False	NA	-23	True	AAAAAG	-30	NA	78162679	78181405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78163210_78163603_78163796_78163922_78164126_78164266_78164386_78164507_78164729_78165290_78165482_78165613_78165714_78165832_78166036_78167865_78168161_78169872_78170031_78170534_78170742_78173884_78173985_78174925_78175109_78175564_78175687_78176263_78176420_78176500_78176623_78177338_78177520_78178121_78178209_78178509_78178621_78178757_78178894_78178990_78179122_78179766_78179869_78180111_78180247_78180629
ENSMUSG00000010277.8_119	chr11	+	3915	22	ISM	ENSMUSG00000010277.8	ENSMUST00000010421.7	7443	39	11469	44	70	-44	3prime_fragment	FALSE	canonical	3	556	junction_2	76.3810117563004	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGGCCTTTTTTAATTG	NA	False	NA	-23	True	AAAAAG	-30	NA	78164046	78181405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78164126_78164266_78164386_78164507_78164729_78165290_78165482_78165613_78165714_78165832_78166036_78167865_78168161_78169872_78170031_78170534_78170742_78173884_78173985_78174925_78175109_78175564_78175687_78176263_78176420_78176500_78176623_78177338_78177520_78178121_78178209_78178509_78178621_78178757_78178894_78178990_78179122_78179766_78179869_78180111_78180247_78180629
ENSMUSG00000010290.8_0	chr1	+	3408	4	FSM	ENSMUSG00000010290.8	ENSMUST00000010434.8	3458	4	39	11	39	-11	multi-exon	FALSE	canonical	3	151	junction_3	24.6080384337223	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAACTATCTTGAGCAG	NA	False	NA	NA	False	AATAAA	-4	NA	43137908	43155096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_43138023_43139874_43140042_43150157_43150534_43152345
ENSMUSG00000010290.8_6	chr1	+	2139	1	ISM	ENSMUSG00000010290.8	ENSMUST00000010434.8	3458	4	15088	11	15088	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAACTATCTTGAGCAG	NA	False	NA	NA	False	AATAAA	-4	NA	43152957	43155096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_43153000_43155100
ENSMUSG00000010307.8_0	chr7	+	1784	3	FSM	ENSMUSG00000010307.8	ENSMUST00000010451.8	1831	3	28	19	28	-19	multi-exon	FALSE	canonical	3	21	junction_1	1	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAACCTAAGGGCCAT	NA	False	NA	NA	False	AATAAA	-5	NA	46700376	46704506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_46700550_46702597_46702863_46703160
ENSMUSG00000010342.17_0	chr11	+	4762	31	FSM	ENSMUSG00000010342.17	ENSMUST00000060835.12	4763	31	-1	2	-1	2	multi-exon	FALSE	canonical	1	19	junction_12	24.6584671056414	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGGGTGCCAGTTGTGA	NA	False	NA	12	True	AATAAA	-18	NA	87295889	87446647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87433315_87433394_87434109_87434204_87440257_87440351_87442356_87442467_87445753_87445806_87446309
ENSMUSG00000010342.17_15	chr11	+	4671	30	NIC	ENSMUSG00000010342.17	novel	4763	31	NA	NA	12	2	combination_of_known_splicesites	FALSE	canonical	1	11	junction_25	28.6387977613865	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGGGTGCCAGTTGTGA	NA	False	NA	12	True	AATAAA	-18	NA	87295902	87446647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87434109_87434204_87440257_87440351_87442356_87442467_87445753_87445806_87446309
ENSMUSG00000010342.17_2	chr11	+	4615	29	NIC	ENSMUSG00000010342.17	novel	4763	31	NA	NA	-26	2	combination_of_known_splicesites	FALSE	canonical	1	18	junction_25	27.8112029621892	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGGGTGCCAGTTGTGA	NA	False	NA	12	True	AATAAA	-18	NA	87295864	87446647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87440257_87440351_87442356_87442467_87445753_87445806_87446309
ENSMUSG00000010342.17_4	chr11	+	4607	30	NIC	ENSMUSG00000010342.17	novel	4763	31	NA	NA	-12	2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	29.2016239184881	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGGGTGCCAGTTGTGA	NA	False	NA	12	True	AATAAA	-18	NA	87295878	87446647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_87295997_87324634_87324772_87365229_87365345_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87433315_87433394_87434109_87434204_87440257_87440351_87442356_87442467_87445753_87445806_87446309
ENSMUSG00000010358.14_1	chr11	+	1103	7	FSM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	23	236	-14	-2	multi-exon	FALSE	canonical	3	40	junction_3	8.33499983336666	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTGTGATGGTCTTC	1004	False	NA	3	True	NA	NA	NA	101339255	101349288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445_101348633_101348716_101348824_101349026
ENSMUSG00000010358.14_3	chr11	+	1325	6	ISM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	4	236	4	-2	intron_retention	FALSE	canonical	3	40	junction_3	7.94984276574072	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTGTGATGGTCTTC	985	False	NA	3	True	NA	NA	NA	101339236	101349288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445_101348633_101348716
ENSMUSG00000010358.14_5	chr11	+	1478	4	ISM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	31	237	-6	-3	intron_retention	FALSE	canonical	3	40	junction_3	9.17726659862414	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGTGTGATGGTCTT	1012	False	NA	2	True	NA	NA	NA	101339263	101349287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241
ENSMUSG00000010362.10_6	chr11	+	1295	6	NIC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	14	5	intron_retention	FALSE	canonical	3	866	junction_1	132.095420056866	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTAACAAAGGTGTCTTGT	NA	False	NA	6	True	AATAAA	-5	NA	101518781	101526903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
ENSMUSG00000010362.10_8	chr11	+	1087	7	FSM	ENSMUSG00000010362.10	ENSMUST00000010506.10	1124	7	14	23	14	5	multi-exon	FALSE	canonical	3	866	junction_2	120.614284210269	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTAACAAAGGTGTCTTGT	NA	False	NA	6	True	AATAAA	-5	NA	101518781	101526903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
ENSMUSG00000010376.16_0	chr14	-	600	4	FSM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	222	2	-25	0	multi-exon	FALSE	canonical	3	1795	junction_3	42.0502345085283	482	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGACTCTTTCTTCTT	NA	False	NA	-13	True	AATAAA	-13	NA	55909359	55899721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55900083_55900871_55900955_55901268_55901317_55909251
ENSMUSG00000010392.9_1	chr11	-	2523	1	ISM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	34450	5	34438	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGCCATGTCTTTGGTT	3579	False	NA	NA	False	AATAAA	-11	NA	76619955	76617432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_76617400_76620000
ENSMUSG00000010392.9_2	chr11	-	4271	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	13	5	1	-5	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGCCATGTCTTTGGTT	NA	False	NA	NA	False	AATAAA	-11	NA	76654392	76617432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ENSMUSG00000010406.13_0	chr14	+	394	5	FSM	ENSMUSG00000010406.13	ENSMUST00000010550.12	418	5	13	11	0	-1	multi-exon	FALSE	canonical	3	1056	junction_1	196.876230154887	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTCCCAGACTCTCTCTG	NA	False	NA	16	True	AATAAA	-17	NA	54664378	54667202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_54664418_54664490_54664549_54664627_54664696_54666040_54666106_54667038
ENSMUSG00000010406.13_2	chr14	+	484	4	NIC	ENSMUSG00000010406.13	novel	418	5	NA	NA	1	1	intron_retention	FALSE	canonical	3	1056	junction_1	226.233409459248	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCCAGACTCTCTCTGGC	NA	False	NA	18	True	AATAAA	-19	NA	54664369	54667204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_54664418_54664490_54664696_54666040_54666106_54667038
ENSMUSG00000010406.13_5	chr14	+	427	4	FSM	ENSMUSG00000010406.13	ENSMUST00000199195.3	463	4	32	4	32	-1	multi-exon	FALSE	canonical	3	1331	junction_1	96.858430482615	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTCCCAGACTCTCTCTG	NA	False	NA	16	True	AATAAA	-17	NA	54664418	54667202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_54664549_54664627_54664696_54666040_54666106_54667038
ENSMUSG00000010453.13_1	chr1	-	4635	21	NIC	ENSMUSG00000010453.13	novel	2907	22	NA	NA	19	-2	combination_of_known_junctions	TRUE	canonical	3	52	junction_19	36.1657296345587	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTGCTTCAGCTTGTTT	NA	False	NA	-9	True	AATAAA	-19	NA	36408217	36374812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406830_36407116_36408185
ENSMUSG00000010453.13_10	chr1	-	4610	20	NIC	ENSMUSG00000010453.13	novel	2907	22	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	52	junction_19	35.7510629793734	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTGCTTCAGCTTGTTT	NA	False	NA	-9	True	AATAAA	-19	NA	36407122	36374812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406830
ENSMUSG00000010453.13_19	chr1	-	4542	21	NIC	ENSMUSG00000010453.13	novel	4663	21	NA	NA	21	-7	combination_of_known_junctions	FALSE	canonical	3	11	junction_19	43.3662022778108	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTGCGTTGCTTCAGCT	NA	False	NA	-14	True	AATAAA	-14	NA	36408215	36374817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404667_36406849_36407116_36408185
ENSMUSG00000010453.13_2	chr1	-	1390	1	ISM	ENSMUSG00000010453.13	ENSMUST00000185912.7	4527	21	32031	7	30888	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTGCGTTGCTTCAGCT	NA	False	NA	-14	True	AATAAA	-14	NA	36376207	36374817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_36374800_36376200
ENSMUSG00000010453.13_3	chr1	-	4598	21	NIC	ENSMUSG00000010453.13	novel	4663	21	NA	NA	13	-6	combination_of_known_junctions	FALSE	canonical	3	15	junction_19	42.6348155853875	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGCGTTGCTTCAGCTT	NA	False	NA	-13	True	AATAAA	-15	NA	36408223	36374816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404714_36406849_36407116_36408185
ENSMUSG00000010453.13_4	chr1	-	4586	20	ISM	ENSMUSG00000010453.13	ENSMUST00000010597.10	4663	21	1140	7	0	-7	3prime_fragment	FALSE	canonical	3	87	junction_19	29.8025822004935	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTGCGTTGCTTCAGCT	NA	False	NA	-14	True	AATAAA	-14	NA	36407122	36374817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406849
ENSMUSG00000010453.13_6	chr1	-	4610	21	FSM	ENSMUSG00000010453.13	ENSMUST00000010597.10	4663	21	46	7	20	-7	multi-exon	FALSE	canonical	3	87	junction_19	30.7481300244421	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTGCGTTGCTTCAGCT	NA	False	NA	-14	True	AATAAA	-14	NA	36408216	36374817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406849_36407116_36408185
ENSMUSG00000010517.8_0	chr4	+	2454	19	FSM	ENSMUSG00000010517.8	ENSMUST00000102724.5	4468	19	97	1917	97	-1917	multi-exon	FALSE	canonical	3	1050	junction_10	116.73236245551	1944	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTCCCATCCATGAGT	NA	False	NA	20	True	AATAAA	-12	NA	109533881	109819240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_109534270_109567986_109568056_109577952_109578000_109584586_109584790_109593787_109593880_109600062_109600155_109614776_109614883_109651964_109652052_109687002_109687099_109697512_109697640_109698505_109698570_109699484_109699567_109719005_109719161_109740832_109740970_109748098_109748188_109782494_109782576_109783081_109783160_109792679_109792896_109818995
ENSMUSG00000010538.15_1	chr3	-	524	5	Fusion	ENSMUSG00000010538.15_ENSMUSG00000103766.6	novel	600	2	NA	NA	20	3316	multi-exon	FALSE	canonical	3	15	junction_1	78.2719617743161	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCCACCTCTGCCTGG	NA	False	NA	NA	False	NA	NA	NA	88204183	88186747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr3_-_88186818_88187238_88187460_88194404_88194525_88202697_88202758_88204130
ENSMUSG00000010538.15_3	chr3	-	469	4	FSM	ENSMUSG00000010538.15	ENSMUST00000107556.10	584	4	113	2	10	1	multi-exon	TRUE	canonical	3	152	junction_3	20.138409955991	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGACATGGGTCTGAGT	NA	False	NA	NA	False	CATAAA	-12	NA	88204193	88190065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88190292_88194404_88194525_88202697_88202758_88204130
ENSMUSG00000010538.15_7	chr3	-	1537	3	ISM	ENSMUSG00000010538.15	ENSMUST00000107556.10	584	4	148	3012	-13	-3009	5prime_fragment	FALSE	canonical	3	152	junction_2	22.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88204158	88193075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88194525_88202697_88202758_88204130
ENSMUSG00000010554.15_0	chr11	+	2711	10	FSM	ENSMUSG00000010554.15	ENSMUST00000141755.8	12584	10	27	9846	27	785	multi-exon	FALSE	canonical	3	325	junction_5	30.3892443611141	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATTGAAAACTATTGAT	8521	False	NA	89	True	AATATA	-7	NA	74661682	74709505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
ENSMUSG00000010554.15_1	chr11	+	2786	11	NIC	ENSMUSG00000010554.15	novel	2054	12	NA	NA	21	788	combination_of_known_junctions	FALSE	canonical	3	58	junction_5	139.204202522769	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGAAAACTATTGATCCT	8515	False	NA	92	True	AATATA	-10	NA	74661676	74709508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686577_74686644_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
ENSMUSG00000010554.15_31	chr11	+	935	1	ISM	ENSMUSG00000010554.15	ENSMUST00000141755.8	12584	10	46832	9929	9133	702	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGACAGCATTGTTTTGTA	NA	False	NA	6	True	AATAAA	-17	NA	74708487	74709422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_74708500_74709400
ENSMUSG00000010554.15_33	chr11	+	3354	1	ISM	ENSMUSG00000010554.15	ENSMUST00000141755.8	12584	10	51639	2703	13940	-2703	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAACTGTGTCTTTATAT	NA	False	NA	NA	False	NA	NA	NA	74713294	74716648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_74713300_74716600
ENSMUSG00000010592.10_0	chr17	-	2882	10	NIC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	3	158	junction_3	120.807570689102	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCATCACTGACTTACT	NA	False	NA	-9	True	AATAAA	-12	NA	50600625	50586428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_50588340_50590155_50590255_50591265_50591380_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
ENSMUSG00000010592.10_1	chr17	-	2933	11	FSM	ENSMUSG00000010592.10	ENSMUST00000010736.9	2976	11	39	4	2	-4	multi-exon	FALSE	canonical	3	352	junction_4	74.6324996231534	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCATCACTGACTTACT	NA	False	NA	-9	True	AATAAA	-12	NA	50600625	50586428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
ENSMUSG00000010592.10_2	chr17	-	1358	1	ISM	ENSMUSG00000010592.10	ENSMUST00000233248.2	2820	11	12134	6	2565	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCATCACTGACTTACT	NA	False	NA	-9	True	AATAAA	-12	NA	50587786	50586428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_50586400_50587800
ENSMUSG00000010607.9_0	chr9	+	646	2	FSM	ENSMUSG00000010607.9	ENSMUST00000123680.2	695	2	23	26	23	7	multi-exon	FALSE	canonical	3	566	junction_1	0	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACGACCAGCCTTCATCC	NA	False	NA	18	True	AATAAA	-18	NA	22068164	22069628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_22068210_22069027
ENSMUSG00000010607.9_1	chr9	+	607	1	NIC	ENSMUSG00000010607.9	novel	695	2	NA	NA	785	12	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGCCTTCATCCAAAGA	NA	False	NA	23	True	AATAAA	-23	NA	22069026	22069633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_22069000_22069600
ENSMUSG00000010607.9_2	chr9	+	715	2	FSM	ENSMUSG00000010607.9	ENSMUST00000148088.2	676	2	-29	-10	-29	10	multi-exon	FALSE	canonical	3	126	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGACCAGCCTTCATCCAAA	NA	False	NA	21	True	AATAAA	-21	NA	22068212	22069631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_22068324_22069027
ENSMUSG00000010608.16_113	chr12	+	3725	10	ISM	ENSMUSG00000010608.16	ENSMUST00000182450.8	2994	18	20748	-1055	411	-48	3prime_fragment	FALSE	canonical	3	445	junction_1	62.3047072315558	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGGAGATGCTTTCTTT	NA	False	NA	4	True	ATTAAA	-15	NA	83710160	83729849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
ENSMUSG00000010608.16_118	chr12	+	3982	9	NIC	ENSMUSG00000010608.16	novel	2994	18	NA	NA	534	-48	intron_retention	FALSE	canonical	3	445	junction_1	60.7901102153961	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGGAGATGCTTTCTTT	NA	False	NA	4	True	ATTAAA	-15	NA	83710283	83729849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83722093_83722855_83722955_83724628_83724677_83728276
ENSMUSG00000010608.16_125	chr12	+	2791	9	ISM	ENSMUSG00000010608.16	ENSMUST00000182450.8	2994	18	25514	-1055	5177	-48	3prime_fragment	FALSE	canonical	3	467	junction_5	56.5663327430725	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGGAGATGCTTTCTTT	NA	False	NA	4	True	ATTAAA	-15	NA	83714926	83729849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
ENSMUSG00000010608.16_140	chr12	+	1124	1	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	49706	42	7105	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGCTTTCTTTGAGTCT	NA	False	NA	10	True	ATTAAA	-21	NA	83728731	83729855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_83728700_83729900
ENSMUSG00000010608.16_5	chr12	+	4345	21	NIC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	8	-50	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	164.86857644803	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCTTGGAGATGCTTTCT	3994	False	NA	2	True	ATTAAA	-13	NA	83679038	83729847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_83679192_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
ENSMUSG00000010608.16_7	chr12	+	4164	19	FSM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	14	48	9	-48	multi-exon	FALSE	canonical	3	212	junction_1	109.211215111695	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGGAGATGCTTTCTTT	3995	False	NA	4	True	ATTAAA	-15	NA	83679039	83729849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
ENSMUSG00000010608.16_8	chr12	+	4225	20	NIC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	12	-48	combination_of_known_junctions	FALSE	canonical	3	90	junction_2	144.182728784617	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGGAGATGCTTTCTTT	3998	False	NA	4	True	ATTAAA	-15	NA	83679042	83729849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
ENSMUSG00000010609.16_0	chr1	-	1943	11	FSM	ENSMUSG00000010609.16	ENSMUST00000111108.10	1997	11	52	2	-4	0	multi-exon	FALSE	canonical	2	16	junction_10	6.79411510058521	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCTGGTGTTTGGCCCCT	NA	False	NA	0	True	AATAAA	-17	NA	180083813	180054570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_180055294_180056407_180056527_180056950_180057053_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178_180073323_180083787
ENSMUSG00000010609.16_2	chr1	-	1919	10	ISM	ENSMUSG00000010609.16	ENSMUST00000010753.14	2004	11	190	1	-3	-1	3prime_fragment	FALSE	canonical	3	22	junction_9	5.45690184791497	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGCTGGTGTTTGGCCCC	NA	False	NA	-1	True	AATAAA	-16	NA	180073325	180054571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_180055294_180056407_180056527_180056950_180057053_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178
ENSMUSG00000010609.16_5	chr1	-	1916	10	FSM	ENSMUSG00000010609.16	ENSMUST00000111104.2	1475	10	-3	-438	-3	-1	multi-exon	FALSE	canonical	1	2	junction_3	10.4963250476618	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGCTGGTGTTTGGCCCC	NA	False	NA	-1	True	AATAAA	-16	NA	180073325	180054571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_180055294_180056407_180056527_180056950_180057050_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178
ENSMUSG00000010609.16_7	chr1	-	1949	11	NIC	ENSMUSG00000010609.16	novel	1997	11	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	10.6113147159058	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGTGTTTGGCCCCTTT	NA	False	NA	2	True	AATAAA	-19	NA	180083820	180054568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_180055294_180056407_180056527_180056950_180057050_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178_180073323_180083787
ENSMUSG00000010651.5_0	chr9	-	1638	12	FSM	ENSMUSG00000010651.5	ENSMUST00000010795.5	1689	12	28	23	28	-23	multi-exon	TRUE	canonical	2	3	junction_6	59.9400526973023	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCTTGGTTGCAGTCATT	NA	False	NA	NA	False	AGTAAA	-12	NA	118986133	118977113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_118977482_118977801_118977948_118978029_118978086_118978338_118978519_118978667_118978859_118979891_118979973_118980883_118980983_118982737_118982781_118982993_118983074_118984812_118984871_118985658_118985753_118985891
ENSMUSG00000010651.5_1	chr9	-	3316	10	NIC	ENSMUSG00000010651.5	novel	1689	12	NA	NA	48	-21	intron_retention	FALSE	canonical	1	2	junction_7	64.0146588150704	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGGTTGCAGTCATTTC	NA	False	NA	NA	False	AGTAAA	-14	NA	118986113	118977111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_118977482_118977801_118977948_118978029_118978086_118978338_118978519_118978667_118978859_118979891_118979973_118980883_118980983_118982993_118984871_118985658_118985753_118985891
ENSMUSG00000010660.4_0	chr9	-	2686	15	FSM	ENSMUSG00000010660.4	ENSMUST00000214470.2	2706	15	1	19	1	-19	multi-exon	FALSE	canonical	3	27	junction_4	6.31163486696415	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAATAATCACAAGATAAAT	8080	False	NA	NA	False	TATAAA	-6	NA	118917328	118900613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118917135
ENSMUSG00000010660.4_1	chr9	-	2626	15	FSM	ENSMUSG00000010660.4	ENSMUST00000010804.4	2657	15	12	19	12	-19	multi-exon	FALSE	canonical	3	6	junction_14	9.15540433686184	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAATAATCACAAGATAAAT	2850	False	NA	NA	False	TATAAA	-6	NA	118922558	118900613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118922425
ENSMUSG00000010660.4_16	chr9	-	2048	12	ISM	ENSMUSG00000010660.4	ENSMUST00000214470.2	2706	15	12108	10	-1850	-10	3prime_fragment	TRUE	canonical	3	27	junction_4	6.22445191586316	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGATAAATCCTTCTAGT	NA	False	NA	NA	False	TATAAA	-15	NA	118905221	118900604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151
ENSMUSG00000010660.4_4	chr9	-	1832	11	ISM	ENSMUSG00000010660.4	ENSMUST00000214470.2	2706	15	12395	27	-1563	-27	3prime_fragment	FALSE	canonical	3	27	junction_4	6.37259758654193	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATAATAATCACA	NA	False	NA	NA	False	NA	NA	NA	118904934	118900621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831
ENSMUSG00000010660.4_7	chr9	-	2445	14	ISM	ENSMUSG00000010660.4	ENSMUST00000214470.2	2706	15	3547	27	3547	-27	3prime_fragment	FALSE	canonical	3	27	junction_4	6.03343740034695	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATAATAATCACA	NA	False	NA	NA	False	NA	NA	NA	118913782	118900621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657
ENSMUSG00000010663.6_0	chr19	+	3401	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	52	7	1	-7	multi-exon	TRUE	canonical	3	652	junction_7	60.0436480355873	1619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAAGAATGTTGTTATT	NA	False	NA	11	True	AATAAA	-12	NA	10160303	10174231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
ENSMUSG00000010663.6_2	chr19	+	3400	12	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	231.993480957141	135	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAAGAATGTTGTTATT	NA	False	NA	11	True	AATAAA	-12	NA	10160303	10174231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163843_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
ENSMUSG00000010663.6_65	chr19	+	1676	1	ISM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	12304	7	1873	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAAGAATGTTGTTATT	NA	False	NA	11	True	AATAAA	-12	NA	10172555	10174231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_10172600_10174200
ENSMUSG00000010721.16_11	chr5	-	2639	16	NIC	ENSMUSG00000010721.16	novel	4926	17	NA	NA	10	144	combination_of_known_junctions	FALSE	canonical	1	5	junction_12	14.0611363536364	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTTGAATTTAGTTTC	NA	False	NA	-1	True	AGTAAA	-14	NA	29583372	29436972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_29438147_29439975_29440138_29457740_29457808_29459239_29459331_29459543_29459618_29463055_29463134_29463676_29463754_29468392_29468474_29492388_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29551764_29551905_29566045_29566086_29568880_29568954_29583124
ENSMUSG00000010721.16_15	chr5	-	953	9	ISM	ENSMUSG00000010721.16	ENSMUST00000055195.11	4926	17	-4	57589	2	-29314	5prime_fragment	FALSE	canonical	3	35	junction_4	8.10863737011343	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTGTTACATACTTA	NA	False	NA	NA	False	NA	NA	NA	29583386	29492388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29528799_29528904_29551764_29551905_29566045_29566086_29568880_29568954_29583124
ENSMUSG00000010721.16_2	chr5	-	2635	16	NIC	ENSMUSG00000010721.16	novel	4926	17	NA	NA	-17	144	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	14.8802628411672	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTTGAATTTAGTTTC	NA	False	NA	-1	True	AGTAAA	-14	NA	29583345	29436972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_29438147_29439975_29440138_29457740_29457808_29459239_29459331_29459543_29459618_29463055_29463134_29463676_29463754_29492388_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29528799_29528904_29551764_29551905_29566045_29566086_29568880_29568954_29583124
ENSMUSG00000010721.16_3	chr5	-	2744	17	FSM	ENSMUSG00000010721.16	ENSMUST00000055195.11	4926	17	7	2175	7	142	multi-exon	FALSE	canonical	3	26	junction_2	11.2080816266656	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATTGTTGAATTTAGTT	NA	False	NA	-3	True	AGTAAA	-12	NA	29583375	29436974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_29438147_29439975_29440138_29457740_29457808_29459239_29459331_29459543_29459618_29463055_29463134_29463676_29463754_29468392_29468474_29492388_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29528799_29528904_29551764_29551905_29566045_29566086_29568880_29568954_29583124
ENSMUSG00000010751.16_1	chr7	-	4142	6	FSM	ENSMUSG00000010751.16	ENSMUST00000075588.13	4170	6	21	7	12	-7	multi-exon	FALSE	canonical	3	105	junction_4	22.3338308402298	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATAATCTAATCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	143203377	143188551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143192174_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
ENSMUSG00000010751.16_2	chr7	-	4788	6	NIC	ENSMUSG00000010751.16	novel	2298	7	NA	NA	28	-2	intron_retention	FALSE	canonical	3	18	junction_1	53.9384834788669	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTAATCTGGCTTGAATT	NA	False	NA	NA	False	NA	NA	NA	143203361	143188546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_143192174_143192981_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
ENSMUSG00000010751.16_4	chr7	-	2487	1	FSM	ENSMUSG00000010751.16	ENSMUST00000171066.2	1780	1	-711	4	-711	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTAATCTGGCTTGAATT	NA	False	NA	NA	False	NA	NA	NA	143191033	143188546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143188500_143191000
ENSMUSG00000010751.16_5	chr7	-	1569	7	FSM	ENSMUSG00000010751.16	ENSMUST00000146692.8	2298	7	21	708	12	-708	multi-exon	FALSE	canonical	3	15	junction_2	62.0232931154811	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATGGAACAGTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	143203377	143191169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143192174_143192981_143193027_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
ENSMUSG00000010755.18_0	chr7	-	2708	23	FSM	ENSMUSG00000010755.18	ENSMUST00000010899.14	3222	23	36	478	2	-1	multi-exon	TRUE	canonical	3	290	junction_21	336.211639490553	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGTCTGGTCTGCCCTCT	NA	False	NA	-4	True	AATAAA	-14	NA	143153791	143111444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
ENSMUSG00000010755.18_1	chr7	-	2460	22	FSM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	2	0	2	0	multi-exon	TRUE	canonical	3	1234	junction_21	93.4109735380392	1709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTGGTCTGCCCTCTC	NA	False	NA	-3	True	AATAAA	-15	NA	143153791	143111443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
ENSMUSG00000010760.6_0	chr7	-	735	2	FSM	ENSMUSG00000010760.6	ENSMUST00000010904.5	757	2	17	5	17	-5	multi-exon	FALSE	canonical	3	98	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAACTGTGTGGTCTGTGT	NA	False	NA	-3	True	AATAAA	-22	NA	143056261	143055286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143055554_143055793
ENSMUSG00000010796.12_0	chr6	-	1726	13	FSM	ENSMUSG00000010796.12	ENSMUST00000010940.11	1736	13	2	8	2	-8	multi-exon	FALSE	canonical	1	1	junction_4	5.42307313450798	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTCAGAGAAACTGTGCT	-4	True	NA	NA	False	AATAAA	-16	NA	18109054	18050970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_18051403_18054526_18054641_18055433_18055540_18071963_18072074_18073760_18073818_18074824_18074901_18075759_18075885_18076503_18076639_18077151_18077264_18103498_18103611_18104774_18104898_18108401_18108502_18108930
ENSMUSG00000010803.14_0	chr11	-	3534	10	FSM	ENSMUSG00000010803.14	ENSMUST00000020707.12	4688	10	607	547	137	-547	multi-exon	FALSE	canonical	1	1	junction_3	2.82842712474619	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCGTGTTGCCGTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	42073150	42022312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_42024618_42026234_42026438_42031075_42031229_42037916_42038061_42044160_42044244_42045635_42045857_42053380_42053449_42066728_42066839_42070386_42070476_42072992
ENSMUSG00000010803.14_1	chr11	-	931	1	ISM	ENSMUSG00000010803.14	ENSMUST00000205546.2	4045	10	49749	545	47429	-545	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCGTGTTGCCGTTTATC	NA	False	NA	NA	False	AATAAA	-18	NA	42023241	42022310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_42022300_42023200
ENSMUSG00000010803.14_2	chr11	-	3487	10	FSM	ENSMUSG00000010803.14	ENSMUST00000205546.2	4045	10	12	546	12	-546	multi-exon	FALSE	canonical	0	0	junction_9	3.0951973949298	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCGTGTTGCCGTTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	42072978	42022311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_42024618_42026234_42026438_42031075_42031229_42037916_42038061_42044160_42044244_42045635_42045857_42053380_42053449_42066728_42066839_42070386_42070476_42072868
ENSMUSG00000010825.18_1	chr5	+	4093	22	FSM	ENSMUSG00000010825.18	ENSMUST00000110733.9	3825	22	25	-293	25	-37	multi-exon	TRUE	canonical	0	0	junction_4	1.4630753805464	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAATGTCCCACCGGAGG	NA	False	NA	NA	False	AATAAA	-16	NA	143343117	143377516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143343702_143348306_143348462_143358748_143358998_143359185_143359272_143360154_143360225_143361006_143361102_143361304_143361489_143363243_143363399_143365006_143365148_143365854_143365953_143366140_143366259_143367337_143367694_143368268_143368686_143371761_143371850_143372475_143372554_143373072_143373270_143373576_143373733_143373863_143373951_143374403_143374534_143374621_143374741_143376795_143376961_143377151
ENSMUSG00000010830.9_0	chr15	+	1386	5	FSM	ENSMUSG00000010830.9	ENSMUST00000010974.9	1411	5	23	2	23	-2	multi-exon	FALSE	canonical	3	201	junction_3	14.7986485869487	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTCAAGTATTTATTTA	NA	False	NA	9	True	AATAAA	-14	NA	79400634	79411938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79400842_79407011_79407113_79409004_79409164_79409867_79410121_79411272
ENSMUSG00000010911.13_0	chr2	+	861	7	FSM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	52	6	32	0	multi-exon	FALSE	canonical	3	304	junction_6	40.9691618442729	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGTTGGAAATTTTCT	4645	False	NA	19	True	AATAAA	-41	NA	102904071	102922983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922262_102922809
ENSMUSG00000010911.13_2	chr2	+	1403	6	ISM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	58	6	38	0	intron_retention	FALSE	canonical	3	333	junction_2	37.3363094051889	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGTTGGAAATTTTCT	4651	False	NA	19	True	AATAAA	-41	NA	102904077	102922983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093
ENSMUSG00000010914.11_0	chr2	-	1750	11	FSM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	39	717	-12	-717	multi-exon	FALSE	canonical	3	314	junction_1	20.370567002418	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTATGTTTGGTTCATTTG	NA	False	NA	0	True	ATTAAA	-16	NA	102903819	102852136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
ENSMUSG00000010936.12_0	chr8	+	3065	19	FSM	ENSMUSG00000010936.12	ENSMUST00000034190.11	3069	19	1	3	1	1	multi-exon	FALSE	canonical	3	368	junction_15	41.1869046070606	829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCAAGTCTGCCTGCTCC	7362	False	NA	13	True	AATAAA	-17	NA	111345231	111447027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111442058_111442210_111446438
ENSMUSG00000010936.12_6	chr8	+	2313	15	ISM	ENSMUSG00000010936.12	ENSMUST00000212663.2	2605	18	1	3696	1	0	5prime_fragment	FALSE	canonical	3	404	junction_10	33.1637864951196	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGGGTTAATTGCT	7366	False	NA	NA	False	NA	NA	NA	111345235	111437315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949
ENSMUSG00000010936.12_8	chr8	+	2916	18	NIC	ENSMUSG00000010936.12	novel	3069	19	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_17	108.822098559751	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGTCTGCCTGCTCCT	7361	False	NA	14	True	AATAAA	-18	NA	111345230	111447028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111446438
ENSMUSG00000011034.7_1	chr5	+	3911	15	FSM	ENSMUSG00000011034.7	ENSMUST00000011178.5	4104	15	15	178	15	-178	multi-exon	TRUE	canonical	0	0	junction_1	3.0572763655761	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGAACTGTGTGCTTTCC	NA	False	NA	NA	False	AATAAA	-8	NA	33261577	33320036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_33261936_33274126_33274199_33289293_33289399_33290729_33290790_33291946_33292052_33301306_33301413_33302593_33302675_33303850_33304072_33304286_33304423_33306240_33306349_33309902_33310054_33311889_33312059_33315431_33315648_33316420_33316530_33318122
ENSMUSG00000011096.18_0	chr7	+	1573	5	FSM	ENSMUSG00000011096.18	ENSMUST00000054343.15	1592	5	8	11	8	2	multi-exon	FALSE	canonical	3	159	junction_1	63.711753232822	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGAGTTCGTGTTGTG	1408	False	NA	8	True	ATTAAA	-13	NA	44498655	44504834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44498773_44501994_44502384_44503203_44503282_44503362_44503533_44504015
ENSMUSG00000011096.18_1	chr7	+	1598	5	NIC	ENSMUSG00000011096.18	novel	1160	5	NA	NA	-33	2	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	128.581443062364	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGAGTTCGTGTTGTG	1724	False	NA	8	True	ATTAAA	-13	NA	44498971	44504834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44499114_44501994_44502384_44503203_44503282_44503362_44503533_44504015
ENSMUSG00000011096.18_19	chr7	+	660	1	ISM	ENSMUSG00000011096.18	ENSMUST00000054343.15	1592	5	5530	8	2183	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGAGTTCGTGTTGTGTGT	6930	False	NA	11	True	ATTAAA	-16	NA	44504177	44504837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_44504200_44504800
ENSMUSG00000011096.18_2	chr7	+	1476	5	FSM	ENSMUSG00000011096.18	ENSMUST00000107882.8	1160	5	358	-674	-20	2	multi-exon	FALSE	canonical	3	55	junction_1	107.27622057101	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGAGTTCGTGTTGTG	2163	False	NA	8	True	ATTAAA	-13	NA	44499410	44504834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44499431_44501994_44502384_44503203_44503282_44503362_44503533_44504015
ENSMUSG00000011096.18_6	chr7	+	1456	4	ISM	ENSMUSG00000011096.18	ENSMUST00000107880.9	1757	5	2564	11	0	2	3prime_fragment	FALSE	canonical	3	274	junction_1	24.1246761636296	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGAGTTCGTGTTGTG	4747	False	NA	8	True	ATTAAA	-13	NA	44501994	44504834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_44502384_44503203_44503282_44503362_44503533_44504015
ENSMUSG00000011114.19_0	chr9	-	1483	9	FSM	ENSMUSG00000011114.19	ENSMUST00000117654.3	1984	9	76	425	1	-6	multi-exon	FALSE	canonical	3	1493	junction_6	94.6836839165017	1373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCGGTTATTTGTTTCT	NA	False	NA	-26	True	AATAAA	-12	NA	37568532	37560483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511_37565733_37566317_37566389_37568293
ENSMUSG00000011148.15_0	chr12	+	1773	13	FSM	ENSMUSG00000011148.15	ENSMUST00000021726.8	1777	13	17	-13	-15	-8	multi-exon	FALSE	canonical	3	62	junction_2	10.1005362893924	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTACACCTGTCTTGACT	NA	False	NA	NA	False	AATAAA	-32	NA	112586495	112607786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112586745_112594734_112594838_112598687_112598751_112599128_112599180_112599502_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
ENSMUSG00000011148.15_1	chr12	+	2075	12	NIC	ENSMUSG00000011148.15	novel	1819	13	NA	NA	-3	4	intron_retention	FALSE	canonical	3	62	junction_2	10.2247471629109	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGAGAGGTCATTACACCT	NA	False	NA	NA	False	AATAAA	-23	NA	112586507	112607777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_112586745_112594734_112594838_112598687_112598751_112599128_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
ENSMUSG00000011148.15_11	chr12	+	1111	6	ISM	ENSMUSG00000011148.15	ENSMUST00000180015.9	1819	13	14430	25	-4849	-4	3prime_fragment	FALSE	canonical	3	75	junction_2	8.2365041127896	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGCCACCGAGAGGTCA	1567	False	NA	NA	False	AATAAA	-15	NA	112600956	112607769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
ENSMUSG00000011148.15_4	chr12	+	1423	11	ISM	ENSMUSG00000011148.15	ENSMUST00000021726.8	1777	13	12209	-15	-7118	-6	3prime_fragment	FALSE	canonical	3	69	junction_4	9.672641831475	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACACCTGTCTTGACTTC	9442	False	NA	NA	False	AATAAA	-34	NA	112598687	112607788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112598751_112599128_112599180_112599502_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
ENSMUSG00000011148.15_5	chr12	+	1644	10	ISM	ENSMUSG00000011148.15	ENSMUST00000021726.8	1777	13	12349	2	-6978	-2	3prime_fragment	FALSE	canonical	3	69	junction_3	9.59681016963964	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCACCGAGAGGTCATT	9582	False	NA	NA	False	AATAAA	-17	NA	112598827	112607771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112599180_112599502_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
ENSMUSG00000011154.18_0	chr7	-	1264	7	FSM	ENSMUSG00000011154.18	ENSMUST00000011298.14	1335	7	70	1	9	-1	multi-exon	FALSE	canonical	0	0	junction_1	0.687184270936277	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGATGTTTCGACACTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	83444018	83424825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_83425371_83426277_83426352_83429371_83429531_83440839_83440931_83442416_83442653_83443203_83443294_83443949
ENSMUSG00000011158.9_26	chr12	-	3785	17	NIC	ENSMUSG00000011158.9	novel	2615	18	NA	NA	-17	-3	combination_of_known_junctions	FALSE	canonical	2	8	junction_14	36.4485939372152	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTAGCTGTGTGTTTATG	NA	False	NA	-6	True	NA	NA	NA	112964069	112923707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_112923979_112924729_112924902_112925342_112925395_112925995_112926253_112926996_112927053_112927129_112927212_112927803_112927866_112929348_112929613_112932884_112932978_112933061_112933102_112933716_112933844_112935881_112935976_112937091_112937242_112943304_112943378_112950078_112951713_112956683_112956765_112963792
ENSMUSG00000011158.9_3	chr12	-	2349	18	NNC	ENSMUSG00000011158.9	novel	2615	18	NA	NA	-14	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	37.0119217677383	200	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGAAACTAGCTGTGTGT	NA	False	NA	-11	True	NA	NA	NA	112964066	112923712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_112923979_112924729_112924902_112925342_112925395_112925995_112926253_112926996_112927053_112927129_112927212_112927803_112927866_112929348_112929613_112932884_112932978_112933061_112933102_112933716_112933844_112935881_112935976_112937091_112937242_112943304_112943378_112946646_112946679_112951538_112951713_112956683_112956765_112963792
ENSMUSG00000011179.9_0	chr12	+	2018	12	FSM	ENSMUSG00000011179.9	ENSMUST00000171737.3	2208	12	179	11	1	-4	multi-exon	FALSE	canonical	3	389	junction_11	306.963561516955	1532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACTGGGCATCAGGGA	NA	False	NA	NA	False	AATAAA	-9	NA	17594973	17601074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_17595170_17597096_17597195_17597283_17597402_17597633_17597808_17597950_17598124_17598309_17598445_17598545_17598628_17598787_17598872_17599424_17599588_17599668_17599782_17599863_17600079_17600607
ENSMUSG00000011179.9_4	chr12	+	2015	12	NNC	ENSMUSG00000011179.9	novel	2208	12	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	canonical	3	102	junction_2	469.236341092261	97	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACTGGGCATCAGGGA	NA	False	NA	NA	False	AATAAA	-9	NA	17594973	17601074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_17595170_17597096_17597195_17597286_17597402_17597633_17597808_17597950_17598124_17598309_17598445_17598545_17598628_17598787_17598872_17599424_17599588_17599668_17599782_17599863_17600079_17600607
ENSMUSG00000011254.17_0	chr11	-	2440	5	NIC	ENSMUSG00000011254.17	novel	2250	6	NA	NA	11	-1027	intron_retention	FALSE	canonical	3	110	junction_2	13.8270568090248	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTTGCTGGAGGAGTCA	6323	False	NA	-8	True	TATAAA	-11	NA	45846299	45838696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_45839156_45841022_45842459_45843561_45843732_45844882_45845060_45846101
ENSMUSG00000011254.17_1	chr11	-	1212	6	FSM	ENSMUSG00000011254.17	ENSMUST00000011398.13	2250	6	11	1027	0	-1027	multi-exon	FALSE	canonical	3	110	junction_3	12.8	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTTGCTGGAGGAGTCA	6312	False	NA	-8	True	TATAAA	-11	NA	45846310	45838696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845060_45846101
ENSMUSG00000011256.17_2	chr11	+	6326	23	FSM	ENSMUSG00000011256.17	ENSMUST00000011400.8	6383	23	51	6	-15	-6	multi-exon	TRUE	canonical	3	430	junction_20	39.4256282802095	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAATGTTCTCTGTTTGG	NA	False	NA	9	True	ATTAAA	-14	NA	45946869	46038164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618
ENSMUSG00000011256.17_61	chr11	+	2540	1	ISM	ENSMUSG00000011256.17	ENSMUST00000011400.8	6383	23	88806	6	10676	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAATGTTCTCTGTTTGG	NA	False	NA	9	True	ATTAAA	-14	NA	46035624	46038164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_46035600_46038200
ENSMUSG00000011257.20_0	chr4	+	3127	15	FSM	ENSMUSG00000011257.20	ENSMUST00000080178.13	3019	15	-123	15	-37	-5	multi-exon	FALSE	canonical	3	253	junction_1	59.8703105189263	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATATGGCTGAATTTGA	NA	False	NA	-7	True	AATAAA	-16	NA	123176580	123192610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ENSMUSG00000011257.20_1	chr4	+	3040	14	FSM	ENSMUSG00000011257.20	ENSMUST00000106243.8	3111	14	-37	108	-37	-5	multi-exon	FALSE	canonical	3	64	junction_10	102.125111806737	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATATGGCTGAATTTGA	NA	False	NA	-7	True	AATAAA	-16	NA	123176580	123192610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ENSMUSG00000011257.20_2	chr4	+	3079	15	FSM	ENSMUSG00000011257.20	ENSMUST00000106241.8	3050	15	-44	15	-37	-5	multi-exon	FALSE	canonical	3	39	junction_10	103.994922364272	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATATGGCTGAATTTGA	NA	False	NA	-7	True	AATAAA	-16	NA	123176580	123192610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189067_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ENSMUSG00000011257.20_31	chr4	+	2034	14	ISM	ENSMUSG00000011257.20	ENSMUST00000080178.13	3019	15	3843	14	3659	-4	3prime_fragment	FALSE	canonical	3	278	junction_2	52.4366058506469	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATATGGCTGAATTTGAT	NA	False	NA	-6	True	AATAAA	-17	NA	123180546	123192611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ENSMUSG00000011257.20_44	chr4	+	1762	12	ISM	ENSMUSG00000011257.20	ENSMUST00000080178.13	3019	15	7323	15	-4730	-5	3prime_fragment	FALSE	canonical	3	324	junction_1	41.2055921744401	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATATGGCTGAATTTGA	296	False	NA	-7	True	AATAAA	-16	NA	123184026	123192610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ENSMUSG00000011257.20_7	chr4	+	3085	15	NNC	ENSMUSG00000011257.20	novel	3019	15	NA	NA	-37	-5	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_14	92.6910602650613	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATATGGCTGAATTTGA	NA	False	NA	-7	True	AATAAA	-16	NA	123176580	123192610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191845_123192305
ENSMUSG00000011263.17_0	chr7	+	3972	12	NNC	ENSMUSG00000011263.17	novel	4016	12	NA	NA	-59	-9	intron_retention	TRUE	canonical	1	4	junction_6	3.17010832257504	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAATGCAATGTAGATTC	NA	False	NA	NA	False	AATAAA	-8	NA	19197196	19230676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_19197279_19203392_19203930_19207852_19208448_19212233_19212346_19213712_19213815_19213904_19214006_19215170_19215282_19218523_19218660_19222976_19223100_19223532_19223689_19225580_19225703_19228881
ENSMUSG00000011263.17_1	chr7	+	3629	11	ISM	ENSMUSG00000011263.17	ENSMUST00000137613.9	4016	12	6398	11	6398	-9	3prime_fragment	FALSE	canonical	1	4	junction_5	3.13209195267316	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAATGCAATGTAGATTC	1275	False	NA	NA	False	AATAAA	-8	NA	19203653	19230676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_19203930_19207852_19208448_19212233_19212346_19213712_19213815_19213904_19214006_19215170_19215282_19218523_19218660_19222976_19223100_19223532_19223689_19225580_19225703_19228881
ENSMUSG00000011263.17_2	chr7	+	2183	10	ISM	ENSMUSG00000011263.17	ENSMUST00000137613.9	4016	12	10612	1166	10612	-1164	3prime_fragment	FALSE	canonical	1	4	junction_4	3.26976421545826	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTAGGAAGGGCTGAGT	5489	False	NA	NA	False	AATAAA	-14	NA	19207867	19229521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_19208448_19212233_19212346_19213712_19213815_19213904_19214006_19215170_19215282_19218523_19218660_19222976_19223100_19223532_19223689_19225580_19225703_19228881
ENSMUSG00000011263.17_4	chr7	+	2643	8	ISM	ENSMUSG00000011263.17	ENSMUST00000137613.9	4016	12	16457	14	-9268	-12	3prime_fragment	FALSE	canonical	1	4	junction_2	3.56284683238284	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAACAAATGCAATGTAGA	1133	False	NA	NA	False	AATAAA	-5	NA	19213712	19230673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_19213815_19213904_19214006_19215170_19215282_19218523_19218660_19222976_19223100_19223532_19223689_19225580_19225703_19228881
ENSMUSG00000011263.17_5	chr7	+	1616	1	ISM	ENSMUSG00000011263.17	ENSMUST00000137613.9	4016	12	31802	14	6077	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAACAAATGCAATGTAGA	92	False	NA	NA	False	AATAAA	-5	NA	19229057	19230673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_19229100_19230700
ENSMUSG00000011267.9_0	chr7	+	1489	3	FSM	ENSMUSG00000011267.9	ENSMUST00000108453.2	1530	3	34	7	34	-7	multi-exon	FALSE	canonical	3	235	junction_1	5.5	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTATGCCTGGACTTTC	761	False	NA	19	True	AATAAA	-14	NA	19311245	19314574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_19311554_19311741_19311886_19313537
ENSMUSG00000011267.9_4	chr7	+	771	1	ISM	ENSMUSG00000011267.9	ENSMUST00000108453.2	1530	3	2592	7	2050	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTATGCCTGGACTTTC	3319	False	NA	19	True	AATAAA	-14	NA	19313803	19314574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_19313800_19314600
ENSMUSG00000011305.12_0	chr17	-	1929	9	FSM	ENSMUSG00000011305.12	ENSMUST00000019808.12	1986	9	51	6	51	0	multi-exon	FALSE	canonical	2	6	junction_1	3.19912097301743	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAGGTAGGTTTTGGAA	1144	False	NA	NA	False	AATAAA	-14	NA	56424545	56418606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56419542_56419869_56419984_56420898_56421099_56422092_56422274_56422550_56422634_56423257_56423454_56423828_56423890_56424082_56424198_56424501
ENSMUSG00000011305.12_6	chr17	-	1260	8	ISM	ENSMUSG00000011305.12	ENSMUST00000019808.12	1986	9	51	1003	51	-997	5prime_fragment	FALSE	canonical	2	7	junction_2	3.09047252182628	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACTAAGATAGGCCAAGG	1144	False	NA	NA	False	ATTAAA	-9	NA	56424545	56419603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56419984_56420898_56421099_56422092_56422274_56422550_56422634_56423257_56423454_56423828_56423890_56424082_56424198_56424501
ENSMUSG00000011306.8_0	chr8	+	2068	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	221	392	0	-392	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	2378	False	NA	11	True	ATTAAA	-16	NA	70495683	70524605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ENSMUSG00000011306.8_42	chr8	+	1281	8	ISM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	17746	392	17510	-392	3prime_fragment	FALSE	canonical	3	479	junction_1	40.0336593075255	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	1650	False	NA	11	True	ATTAAA	-16	NA	70513208	70524605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ENSMUSG00000011306.8_8	chr8	+	3305	8	FSM	ENSMUSG00000011306.8	ENSMUST00000211808.2	2963	8	5	-347	5	347	multi-exon	FALSE	canonical	3	384	junction_4	42.1644012728021	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAATGTCCGTTTCTGC	2383	False	NA	NA	False	NA	NA	NA	70495688	70519908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486
ENSMUSG00000011349.6_1	chr7	+	1610	9	FSM	ENSMUSG00000011349.6	ENSMUST00000011493.6	1619	9	7	2	7	-2	multi-exon	FALSE	canonical	3	8	junction_1	6.69771416230941	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCATCGAGAGTTGATTA	NA	False	NA	2	True	NA	NA	NA	24569488	24577074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24569598_24571902_24572131_24572204_24572360_24573346_24573424_24573622_24573804_24574331_24574459_24575172_24575234_24575373_24575549_24576577
ENSMUSG00000011349.6_7	chr7	+	1061	5	ISM	ENSMUSG00000011349.6	ENSMUST00000011493.6	1619	9	4121	2	4121	-2	3prime_fragment	FALSE	canonical	3	13	junction_4	5.31507290636732	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCATCGAGAGTTGATTA	NA	False	NA	2	True	NA	NA	NA	24573602	24577074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24573804_24574331_24574459_24575172_24575234_24575373_24575549_24576577
ENSMUSG00000011382.9_0	chr7	-	1327	1	ISM	ENSMUSG00000011382.9	ENSMUST00000011526.7	5323	7	16486	6	7612	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCACACCTTCCAATTC	7045	False	NA	-15	True	NA	NA	NA	45121743	45120416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45120400_45121700
ENSMUSG00000011382.9_6	chr7	-	1099	7	FSM	ENSMUSG00000011382.9	ENSMUST00000011526.7	5323	7	26	4198	26	445	multi-exon	FALSE	canonical	2	18	junction_4	6.73300329224139	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTTGTTGTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	45138203	45124608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45124800_45125028_45125177_45128432_45128558_45131212_45131466_45136164_45136329_45137483_45137596_45138097
ENSMUSG00000011427.17_0	chr7	+	3735	5	FSM	ENSMUSG00000011427.17	ENSMUST00000032796.14	3376	5	-19	-340	-14	275	multi-exon	FALSE	canonical	3	32	junction_1	5.78791845139511	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAACTTGGAAGTGCTTG	NA	False	NA	NA	False	NA	NA	NA	29515524	29530705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29515715_29522404_29522570_29524254_29524379_29525116_29525213_29527545
ENSMUSG00000011427.17_1	chr7	+	4087	5	FSM	ENSMUSG00000011427.17	ENSMUST00000178162.3	3356	5	-18	-713	-18	713	multi-exon	TRUE	canonical	2	3	junction_1	16.6789538041209	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTTACAGAAGAGGTGA	NA	False	NA	NA	False	AGTAAA	-3	NA	29515520	29531143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29515715_29522494_29522570_29524254_29524379_29525116_29525213_29527545
ENSMUSG00000011427.17_10	chr7	+	2152	1	ISM	ENSMUSG00000011427.17	ENSMUST00000178162.3	3356	5	12737	3	9860	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTCATTGAGTTAATTTC	9112	False	NA	NA	False	AAGAAA	-15	NA	29528275	29530427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_29528300_29530400
ENSMUSG00000011427.17_14	chr7	+	3691	5	NIC	ENSMUSG00000011427.17	novel	377	2	NA	NA	21	234	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	17.5124955389002	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGACATGATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	29518436	29530664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29518624_29522404_29522570_29524254_29524379_29525116_29525213_29527545
ENSMUSG00000011589.10_0	chr17	+	1744	13	FSM	ENSMUSG00000011589.10	ENSMUST00000011733.9	1748	13	2	2	0	-1	multi-exon	FALSE	canonical	3	52	junction_12	6.07533721057706	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCTCCTGCACTGGTTC	3935	False	NA	4	True	AATAAA	-14	NA	56293512	56303879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56293654_56294742_56294839_56295123_56295256_56295673_56295776_56297211_56297235_56297418_56297541_56298166_56298377_56300842_56300942_56302356_56302517_56302857_56302938_56303071_56303324_56303420_56303510_56303641
ENSMUSG00000011589.10_1	chr17	+	1964	12	NIC	ENSMUSG00000011589.10	novel	1748	13	NA	NA	-30	0	intron_retention	FALSE	canonical	3	52	junction_11	6.33891301264012	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCTGCACTGGTTCTT	3901	False	NA	6	True	AATAAA	-16	NA	56293478	56303881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_56293654_56294742_56294839_56295123_56295256_56295673_56295776_56297211_56297541_56298166_56298377_56300842_56300942_56302356_56302517_56302857_56302938_56303071_56303324_56303420_56303510_56303641
ENSMUSG00000011658.17_2	chr7	+	1475	10	FSM	ENSMUSG00000011658.17	ENSMUST00000209039.2	1453	10	-9	-13	1	-7	multi-exon	FALSE	canonical	3	34	junction_5	26.1448954015034	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCACCCCGGGCTCTTT	NA	False	NA	19	True	AATAAA	-30	NA	44545520	44550041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
ENSMUSG00000011658.17_3	chr7	+	1676	11	FSM	ENSMUSG00000011658.17	ENSMUST00000071207.14	1698	11	15	7	1	-7	multi-exon	FALSE	canonical	3	81	junction_5	12.7373466624725	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCACCCCGGGCTCTTT	NA	False	NA	19	True	AATAAA	-30	NA	44545517	44550041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44547926_44548125_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
ENSMUSG00000011658.17_4	chr7	+	2823	7	NIC	ENSMUSG00000011658.17	novel	1453	10	NA	NA	1	-8	intron_retention	FALSE	canonical	3	96	junction_1	8.78287475083693	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCCACCCCGGGCTCTT	NA	False	NA	18	True	AATAAA	-29	NA	44545517	44550040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44548663_44548735_44548811_44549556
ENSMUSG00000011658.17_5	chr7	+	2632	9	NIC	ENSMUSG00000011658.17	novel	1453	10	NA	NA	1	-1	intron_retention	FALSE	canonical	3	96	junction_1	8.1700673191841	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCCGGGCTCTTTGCTGTC	NA	False	NA	25	True	AATAAA	-36	NA	44545520	44550047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
ENSMUSG00000011751.17_1	chr7	-	4922	20	ISM	ENSMUSG00000011751.17	ENSMUST00000011895.14	8747	36	43692	0	-6354	0	3prime_fragment	FALSE	canonical	1	1	junction_19	9.1932168176903	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	NA	False	NA	0	True	AATAAA	-20	NA	27102332	27055807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27056876_27059167_27059211_27059359_27059534_27060991_27061285_27061820_27061894_27063495_27064116_27064988_27065186_27065832_27065918_27066024_27066164_27067024_27067270_27068613_27068995_27069826_27070032_27071298_27071430_27071521_27071801_27073570_27073661_27074797_27075023_27090857_27091122_27093582_27093730_27097375_27097467_27102160
ENSMUSG00000011751.17_15	chr7	-	4518	14	ISM	ENSMUSG00000011751.17	ENSMUST00000011895.14	8747	36	13081	45653	12999	32165	internal_fragment	FALSE	canonical	2	4	junction_6	2.55356810349197	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAGACACACAT	717	False	NA	NA	False	NA	NA	NA	27132943	27101460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27102364_27103592_27104344_27106535_27106674_27107667_27108602_27114082_27114234_27116129_27116433_27117382_27117542_27117795_27117914_27117989_27118178_27118412_27118526_27123133_27123250_27126250_27126332_27127608_27127701_27132472
ENSMUSG00000011751.17_17	chr7	-	3755	13	ISM	ENSMUSG00000011751.17	ENSMUST00000011895.14	8747	36	13085	47641	13003	30177	internal_fragment	FALSE	canonical	2	4	junction_5	2.32139804619735	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATTGAGGTCTGTGACA	721	False	NA	NA	False	ATTAAA	-19	NA	27132939	27103448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27104344_27106535_27106674_27107667_27108602_27114082_27114234_27116129_27116433_27117382_27117542_27117795_27117914_27117989_27118178_27118412_27118526_27123133_27123250_27126250_27126332_27127608_27127701_27132472
ENSMUSG00000011751.17_2	chr7	-	1292	3	ISM	ENSMUSG00000011751.17	ENSMUST00000108362.8	4861	18	34391	0	34391	0	3prime_fragment	FALSE	canonical	3	37	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	NA	False	NA	0	True	AATAAA	-20	NA	27059540	27055807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27056876_27059167_27059211_27059359
ENSMUSG00000011751.17_23	chr7	-	1449	1	NIC	ENSMUSG00000011751.17	novel	4861	18	NA	NA	36671	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTCGCTGGTTTGTTCG	NA	False	NA	-4	True	AATAAA	-16	NA	27057260	27055811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27055800_27057300
ENSMUSG00000011751.17_26	chr7	-	1148	2	ISM	ENSMUSG00000011751.17	ENSMUST00000108362.8	4861	18	34682	2	34682	2	3prime_fragment	FALSE	canonical	3	38	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCGCTGGTTTGTTCGTG	NA	False	NA	-2	True	AATAAA	-18	NA	27059249	27055809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27056876_27059167
ENSMUSG00000011751.17_3	chr7	-	4772	19	FSM	ENSMUSG00000011751.17	ENSMUST00000108363.8	4724	19	-52	4	-52	0	multi-exon	FALSE	canonical	2	8	junction_18	8.28150549920323	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTCGCTGGTTTGTTCG	NA	False	NA	-4	True	AATAAA	-16	NA	27096030	27055811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27056876_27059167_27059211_27059359_27059534_27060991_27061285_27061820_27061894_27063495_27064116_27064988_27065186_27065832_27065918_27066024_27066164_27067024_27067270_27068613_27068995_27069826_27070032_27071298_27071430_27071521_27071801_27073570_27073661_27074797_27075023_27090857_27091122_27093582_27093730_27095913
ENSMUSG00000011751.17_34	chr7	-	2524	4	ISM	ENSMUSG00000011751.17	ENSMUST00000011895.14	8747	36	37627	45651	-12419	32167	internal_fragment	TRUE	canonical	2	5	junction_3	3.09120616516523	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGACACACATCA	NA	False	NA	NA	False	NA	NA	NA	27108397	27101458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27102364_27103592_27104344_27106535_27106674_27107667
ENSMUSG00000011751.17_4	chr7	-	5438	21	ISM	ENSMUSG00000011751.17	ENSMUST00000011895.14	8747	36	41943	4	-8103	0	3prime_fragment	FALSE	canonical	1	1	junction_19	9.13290753265355	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTCGCTGGTTTGTTCG	NA	False	NA	-4	True	AATAAA	-16	NA	27104081	27055811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27056876_27059167_27059211_27059359_27059534_27060991_27061285_27061820_27061894_27063495_27064116_27064988_27065186_27065832_27065918_27066024_27066164_27067024_27067270_27068613_27068995_27069826_27070032_27071298_27071430_27071521_27071801_27073570_27073661_27074797_27075023_27090857_27091122_27093582_27093730_27097375_27097467_27102160_27102364_27103592
ENSMUSG00000011751.17_7	chr7	-	2072	6	ISM	ENSMUSG00000011751.17	ENSMUST00000108362.8	4861	18	30015	0	30015	0	3prime_fragment	FALSE	canonical	3	20	junction_4	7.70973410695855	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	NA	False	NA	0	True	AATAAA	-20	NA	27063916	27055807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27056876_27059167_27059211_27059359_27059534_27060991_27061285_27061820_27061894_27063495
ENSMUSG00000011752.8_0	chr19	+	1704	4	FSM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	67	4	-48	-4	multi-exon	FALSE	canonical	3	5418	junction_2	350.959003620398	6130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTTACTGTTTGTCTT	4127	False	NA	-4	True	AATAAA	-13	NA	41900428	41907095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044
ENSMUSG00000011831.17_22	chr5	-	3615	19	NIC	ENSMUSG00000011831.17	novel	5849	18	NA	NA	121	76	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	51.3541624408382	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAATGTTGTGAGTATT	NA	False	NA	69	True	AATAAA	-27	NA	108016913	107895065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_107896324_107912541_107912638_107936064_107936161_107938227_107938375_107943564_107943724_107945678_107945820_107946991_107947127_107958155_107958189_107960223_107960278_107961411_107961473_107963476_107963575_107963667_107963758_107964639_107964784_107966754_107966881_107967469_107967545_107968297_107968523_107969570_107969761_107989936_107990167_108016656
ENSMUSG00000011831.17_3	chr5	-	5981	18	NIC	ENSMUSG00000011831.17	novel	5849	18	NA	NA	121	-6	combination_of_known_junctions	FALSE	canonical	3	96	junction_7	27.3729844338649	191	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATTTTATGTCCTTAG	NA	False	NA	-7	True	ATTAAA	-13	NA	108016913	107892666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_107896324_107912541_107912638_107936064_107936161_107938227_107938375_107943564_107943724_107945678_107945820_107946991_107947127_107960223_107960278_107961411_107961473_107963476_107963575_107963667_107963758_107964639_107964784_107966754_107966881_107967469_107967545_107968297_107968523_107969570_107969761_107989936_107990167_108016656
ENSMUSG00000011831.17_7	chr5	-	6161	20	NIC	ENSMUSG00000011831.17	novel	2441	18	NA	NA	121	-6	combination_of_known_junctions	FALSE	canonical	3	73	junction_9	42.475216824889	145	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATTTTATGTCCTTAG	NA	False	NA	-7	True	ATTAAA	-13	NA	108016913	107892666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_107896324_107912541_107912638_107936064_107936161_107938227_107938375_107943564_107943724_107945678_107945820_107946991_107947127_107957455_107957603_107958155_107958189_107960223_107960278_107961411_107961473_107963476_107963575_107963667_107963758_107964639_107964784_107966754_107966881_107967469_107967545_107968297_107968523_107969570_107969761_107989936_107990167_108016656
ENSMUSG00000011831.17_8	chr5	-	2406	1	ISM	ENSMUSG00000011831.17	ENSMUST00000112642.8	5849	18	127901	6	52340	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATTTTATGTCCTTAG	NA	False	NA	-7	True	ATTAAA	-13	NA	107895072	107892666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_107892700_107895100
ENSMUSG00000011832.17_0	chr8	+	3897	19	FSM	ENSMUSG00000011832.17	ENSMUST00000176825.3	3728	19	-173	4	-1	0	multi-exon	FALSE	canonical	3	9	junction_13	6.86285402963656	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCTAAGGGATGCCGAAT	NA	False	NA	-2	True	AATAAA	-13	NA	4216565	4258042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4216764_4233487_4233671_4235960_4236151_4237240_4237466_4237575_4237651_4238286_4238413_4241236_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4250867_4250922_4252935_4253077_4253513_4253643_4255321_4255463_4255571_4255728_4255823_4255971_4256055_4256152_4256231_4256328_4256495
ENSMUSG00000011832.17_1	chr8	+	3930	20	FSM	ENSMUSG00000011832.17	ENSMUST00000176149.9	3938	20	-1	9	-1	0	multi-exon	FALSE	canonical	3	9	junction_12	7.46144290294483	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCTAAGGGATGCCGAAT	NA	False	NA	-2	True	AATAAA	-13	NA	4216565	4258042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4216764_4233487_4233671_4235960_4236151_4237240_4237466_4237575_4237651_4238286_4238413_4241236_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4250867_4250922_4251933_4251967_4252935_4253077_4253513_4253643_4255321_4255463_4255571_4255728_4255823_4255971_4256055_4256152_4256231_4256328_4256495
ENSMUSG00000011832.17_10	chr8	+	2149	5	ISM	ENSMUSG00000011832.17	ENSMUST00000175650.8	2451	7	2088	2	-266	-2	3prime_fragment	FALSE	canonical	3	19	junction_1	6.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTCCTAAGGGATGCCGA	2329	False	NA	-4	True	AATAAA	-11	NA	4255462	4258040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_4255728_4255823_4255971_4256055_4256152_4256231_4256328_4256495
ENSMUSG00000011832.17_20	chr8	+	2555	1	NIC	ENSMUSG00000011832.17	novel	3938	20	NA	NA	-245	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGTCCTAAGGGATGCC	2350	False	NA	-6	True	AATAAA	-9	NA	4255483	4258038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_4255500_4258000
ENSMUSG00000011832.17_4	chr8	+	1549	11	FSM	ENSMUSG00000011832.17	ENSMUST00000239400.2	1542	11	-8	1	-8	-1	multi-exon	FALSE	canonical	3	12	junction_10	5.9464274989274	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGTGCTCCGGATGTAG	NA	False	NA	NA	False	AATAAA	-23	NA	4216558	4243700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4216764_4233487_4233671_4235960_4236151_4237240_4237466_4237575_4237651_4238286_4238413_4241236_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4243548
ENSMUSG00000011837.5_0	chr8	+	1516	5	FSM	ENSMUSG00000011837.5	ENSMUST00000011981.5	1536	5	18	2	4	0	multi-exon	FALSE	canonical	3	110	junction_3	11.3880419739304	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGTGATTCCCCCTTTG	NA	False	NA	14	True	AATAAA	-14	NA	4303097	4306218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4303305_4304281_4304402_4304550_4304620_4304991_4305374_4305480
ENSMUSG00000011877.14_1	chr11	+	3690	19	FSM	ENSMUSG00000011877.14	ENSMUST00000100812.4	3476	19	-235	21	-226	-21	multi-exon	FALSE	canonical	3	379	junction_15	38.5310921429486	960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCACTTCTGATGTCTAG	NA	False	NA	9	True	AATAAA	-12	NA	77384161	77398591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77384461_77389790_77389925_77390342_77390456_77390564_77390671_77391173_77391392_77391472_77391568_77391897_77391941_77393843_77393893_77394181_77394255_77394746_77394845_77395197_77395310_77395424_77395559_77395693_77396078_77396148_77396203_77396329_77396417_77396505_77396580_77396705_77396889_77397004_77397069_77397221
ENSMUSG00000011877.14_2	chr11	+	3722	20	FSM	ENSMUSG00000011877.14	ENSMUST00000037285.10	3512	20	-232	22	-232	-22	multi-exon	TRUE	canonical	3	24	junction_7	121.3660245347	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCACTTCTGATGTCTA	NA	False	NA	8	True	AATAAA	-11	NA	77384155	77398590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77384461_77389790_77389925_77390342_77390456_77390564_77390671_77391173_77391392_77391472_77391568_77391897_77391941_77393654_77393682_77393843_77393893_77394181_77394255_77394746_77394845_77395197_77395310_77395424_77395559_77395693_77396078_77396148_77396203_77396329_77396417_77396505_77396580_77396705_77396889_77397004_77397069_77397221
ENSMUSG00000011884.14_0	chr5	-	1726	5	FSM	ENSMUSG00000011884.14	ENSMUST00000012028.14	1762	5	28	8	-15	-8	multi-exon	TRUE	canonical	3	1353	junction_4	27.6541136180497	1365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTGCATGTGTCTGTGG	NA	False	NA	-5	True	AATAAA	-21	NA	114829017	114807466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114808651_114812114_114812266_114814325_114814460_114815681_114815741_114828819
ENSMUSG00000011958.18_0	chr9	+	2332	10	FSM	ENSMUSG00000011958.18	ENSMUST00000085393.13	2328	10	-4	0	-4	0	multi-exon	FALSE	canonical	3	219	junction_9	27.3933397330153	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGGTCTTAATTACCT	NA	False	NA	17	True	AATAAA	-17	NA	69896781	69915537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914345
ENSMUSG00000011958.18_1	chr9	+	2368	11	FSM	ENSMUSG00000011958.18	ENSMUST00000034754.12	2464	11	34	62	-4	0	multi-exon	FALSE	canonical	3	26	junction_9	104.017354321286	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGGTCTTAATTACCT	NA	False	NA	17	True	AATAAA	-17	NA	69896781	69915537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69911587_69911624_69914345
ENSMUSG00000011958.18_10	chr9	+	3593	9	NIC	ENSMUSG00000011958.18	novel	2328	10	NA	NA	2	0	intron_retention	FALSE	canonical	3	219	junction_8	27.3404462289846	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGGTCTTAATTACCT	NA	False	NA	17	True	AATAAA	-17	NA	69896787	69915537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69910748_69910850_69910950_69914345
ENSMUSG00000011958.18_22	chr9	+	790	1	ISM	ENSMUSG00000011958.18	ENSMUST00000034754.12	2464	11	18000	62	4087	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGGTCTTAATTACCT	NA	False	NA	17	True	AATAAA	-17	NA	69914747	69915537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_69914700_69915500
ENSMUSG00000011960.13_0	chr15	-	2792	1	ISM	ENSMUSG00000011960.13	ENSMUST00000169707.8	7397	10	29432	11	1529	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATACCTGATCCTTGTTT	NA	False	NA	NA	False	AATAAA	-11	NA	98439372	98436580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98436600_98439400
ENSMUSG00000011960.13_4	chr15	-	2257	9	FSM	ENSMUSG00000011960.13	ENSMUST00000012104.7	2175	9	-88	6	-44	-6	multi-exon	FALSE	canonical	3	20	junction_1	11.1439445440113	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGTGAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98465605	98441097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98442490_98444404_98444476_98444625_98444790_98446546_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
ENSMUSG00000012017.5_0	chr16	+	3386	11	FSM	ENSMUSG00000012017.5	ENSMUST00000012161.5	3308	11	-79	1	-79	0	multi-exon	FALSE	canonical	1	1	junction_2	2.53968501984006	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCCAGTGCTCTAATTAC	NA	False	NA	NA	False	AATAAA	-13	NA	17615066	17626156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17615392_17620230_17620290_17620379_17620482_17620643_17621164_17621245_17621465_17621600_17621730_17622169_17622274_17622349_17622468_17622672_17622789_17624212_17624366_17624615
ENSMUSG00000012017.5_11	chr16	+	2559	8	ISM	ENSMUSG00000012017.5	ENSMUST00000012161.5	3308	11	5839	1	-281	0	3prime_fragment	FALSE	canonical	1	1	junction_1	2.49897938350513	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCCAGTGCTCTAATTAC	1445	False	NA	NA	False	AATAAA	-13	NA	17620984	17626156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_17621164_17621245_17621465_17621600_17621730_17622169_17622274_17622349_17622468_17622672_17622789_17624212_17624366_17624615
ENSMUSG00000012017.5_2	chr16	+	3503	9	NIC	ENSMUSG00000012017.5	novel	3445	10	NA	NA	19	1	intron_retention	FALSE	canonical	1	1	junction_2	2.6809513236909	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGTGCTCTAATTACTT	NA	False	NA	NA	False	AATAAA	-15	NA	17615232	17626158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_17615392_17620230_17620290_17620379_17620482_17620643_17621164_17621245_17621465_17621600_17621730_17622169_17622789_17624212_17624366_17624615
ENSMUSG00000012017.5_7	chr16	+	2084	2	ISM	ENSMUSG00000012017.5	ENSMUST00000231383.2	2641	5	1380	3	-27	-1	intron_retention	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTTCCAGTGCTCTAAT	3106	False	NA	NA	False	AATAAA	-10	NA	17622645	17626153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_17622789_17624212
ENSMUSG00000012076.9_0	chr12	+	2548	10	FSM	ENSMUSG00000012076.9	ENSMUST00000059250.8	2609	10	55	6	9	-6	multi-exon	FALSE	canonical	3	160	junction_3	20.0277585143997	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTCATTTGTAGTGTTGTG	NA	False	NA	-4	True	AATAAA	-14	NA	55883163	55916515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_55883431_55888355_55888447_55891180_55891309_55892068_55892149_55906875_55906973_55907872_55907957_55908174_55908240_55909918_55909959_55912735_55912863_55914946
ENSMUSG00000012076.9_2	chr12	+	4645	9	ISM	ENSMUSG00000012076.9	ENSMUST00000059250.8	2609	10	47	1	1	-1	intron_retention	FALSE	canonical	3	160	junction_3	21.242645786248	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTAGTGTTGTGTGTTA	NA	False	NA	1	True	AATAAA	-19	NA	55883155	55916520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_55883431_55888355_55888447_55891180_55891309_55892068_55892149_55906875_55906973_55907872_55907957_55908174_55908240_55909918_55909959_55912735
ENSMUSG00000012114.18_0	chr16	-	3144	17	NIC	ENSMUSG00000012114.18	novel	3410	18	NA	NA	-2	2	combination_of_known_junctions	FALSE	canonical	3	73	junction_13	54.6468420290688	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGGAGTTTATTGCATC	NA	False	NA	-21	True	AATAAA	-18	NA	17540766	17469082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17501022_17501053_17503316_17503369_17515470_17515559_17540619
ENSMUSG00000012114.18_4	chr16	-	3357	18	FSM	ENSMUSG00000012114.18	ENSMUST00000012259.9	3410	18	45	8	-2	2	multi-exon	FALSE	canonical	3	173	junction_13	36.2216360814255	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGGAGTTTATTGCATC	NA	False	NA	-21	True	AATAAA	-18	NA	17540766	17469082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17540619
ENSMUSG00000012114.18_6	chr16	-	3235	17	FSM	ENSMUSG00000012114.18	ENSMUST00000080936.14	3230	17	-4	-1	-1	1	multi-exon	TRUE	canonical	3	37	junction_9	64.8068946467118	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCAGGAGTTTATTGCAT	NA	False	NA	-22	True	AATAAA	-17	NA	17540765	17469083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17540619
ENSMUSG00000012114.18_9	chr16	-	3445	19	NIC	ENSMUSG00000012114.18	novel	3410	18	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	3	20	junction_18	83.3667525581917	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGGAGTTTATTGCATC	NA	False	NA	-21	True	AATAAA	-18	NA	17540769	17469082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17524262_17524348_17540619
ENSMUSG00000012117.14_1	chr4	-	3054	9	FSM	ENSMUSG00000012117.14	ENSMUST00000105889.4	890	9	22	-2186	-6	0	multi-exon	FALSE	canonical	2	7	junction_8	21.5928228816892	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACAAGGTTTGTGTGGT	NA	False	NA	NA	False	AAAAAG	-21	NA	133728207	133696367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728177
ENSMUSG00000012117.14_2	chr4	-	3104	9	FSM	ENSMUSG00000012117.14	ENSMUST00000012262.12	3133	9	29	0	13	0	multi-exon	FALSE	canonical	1	2	junction_8	23.2025725944344	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACAAGGTTTGTGTGGT	NA	False	NA	NA	False	AAAAAG	-21	NA	133728169	133696367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727651_133728035
ENSMUSG00000012117.14_3	chr4	-	3153	9	FSM	ENSMUSG00000012117.14	ENSMUST00000105887.8	2038	9	21	-1136	21	0	multi-exon	FALSE	canonical	3	19	junction_1	18.0346887968714	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACAAGGTTTGTGTGGT	NA	False	NA	NA	False	AAAAAG	-21	NA	133728161	133696367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133698568_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728035
ENSMUSG00000012117.14_5	chr4	-	3164	9	FSM	ENSMUSG00000012117.14	ENSMUST00000144668.8	3219	9	26	29	7	0	multi-exon	FALSE	canonical	3	54	junction_8	7.46554586081956	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACAAGGTTTGTGTGGT	NA	False	NA	NA	False	AAAAAG	-21	NA	133728175	133696367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728035
ENSMUSG00000012117.14_7	chr4	-	1336	8	ISM	ENSMUSG00000012117.14	ENSMUST00000105889.4	890	9	525	-498	0	176	3prime_fragment	FALSE	canonical	3	65	junction_4	5.473498303048	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCATTAGCTATATGCC	NA	False	NA	-24	True	AATACA	-20	NA	133727704	133698055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579
ENSMUSG00000012117.14_9	chr4	-	1671	1	ISM	ENSMUSG00000012117.14	ENSMUST00000144668.8	3219	9	30036	156	9756	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACCCTTGCCTCAGAAAT	NA	False	NA	NA	False	NA	NA	NA	133698165	133696494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133696500_133698200
ENSMUSG00000012123.18_0	chr4	+	6019	22	FSM	ENSMUSG00000012123.18	ENSMUST00000227683.2	5578	22	-445	4	-445	-1	multi-exon	FALSE	canonical	1	2	junction_1	46.1690672034849	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGCTGGTGGTCTCGT	NA	False	NA	13	True	NA	NA	NA	133787680	133819811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_133788242_133790613_133790684_133792549_133793266_133799740_133802247_133802621_133802670_133802751_133802865_133803009_133803140_133806148_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000012123.18_11	chr4	+	1958	15	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	10303	4	-83	-1	3prime_fragment	FALSE	canonical	3	24	junction_2	42.4615071781106	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGCTGGTGGTCTCGT	NA	False	NA	13	True	NA	NA	NA	133806065	133819811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000012123.18_18	chr4	+	1151	8	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	13854	3	-6	0	3prime_fragment	FALSE	canonical	3	103	junction_1	10.7532624380336	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133809616	133819812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000012123.18_20	chr4	+	1020	7	NIC	ENSMUSG00000012123.18	novel	4761	20	NA	NA	-6	-1	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	40.2478432824529	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGCTGGTGGTCTCGT	NA	False	NA	13	True	NA	NA	NA	133809616	133819811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_133809759_133809885_133809999_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000012123.18_28	chr4	+	1035	7	NIC	ENSMUSG00000012123.18	novel	4761	20	NA	NA	-6	2	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	39.282806530197	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTATGCTGCTGGTGGTCTC	NA	False	NA	11	True	NA	NA	NA	133809616	133819809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_133809759_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000012123.18_3	chr4	+	4756	20	ISM	ENSMUSG00000012123.18	ENSMUST00000227683.2	5578	22	5056	4	-41	-1	3prime_fragment	FALSE	canonical	2	6	junction_1	45.3144140631175	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGCTGGTGGTCTCGT	NA	False	NA	13	True	NA	NA	NA	133793181	133819811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133793266_133799740_133802247_133802621_133802670_133802751_133802865_133803009_133803140_133806148_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000012123.18_7	chr4	+	2446	19	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	6204	4	-4182	-1	3prime_fragment	FALSE	canonical	3	14	junction_1	44.6930891998105	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGCTGGTGGTCTCGT	NA	False	NA	13	True	NA	NA	NA	133801966	133819811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133802247_133802621_133802670_133802751_133802865_133803009_133803140_133806148_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000012126.17_0	chr4	+	1551	15	FSM	ENSMUSG00000012126.17	ENSMUST00000074690.11	1573	15	20	2	0	0	multi-exon	FALSE	canonical	3	35	junction_2	24.8785827078437	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAGCTTCACAAGGCTC	NA	False	NA	13	True	AATAAA	-13	NA	133829913	133854085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ENSMUSG00000012126.17_23	chr4	+	1572	5	NIC	ENSMUSG00000012126.17	novel	2014	11	NA	NA	-160	0	intron_retention	FALSE	canonical	3	96	junction_2	7.34846922834953	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAGCTTCACAAGGCTC	NA	False	NA	13	True	AATAAA	-13	NA	133851201	133854085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ENSMUSG00000012126.17_24	chr4	+	2491	1	NIC	ENSMUSG00000012126.17	novel	1573	15	NA	NA	233	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAGCTTCACAAGGCTC	NA	False	NA	13	True	AATAAA	-13	NA	133851594	133854085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_133851600_133854100
ENSMUSG00000012126.17_4	chr4	+	2474	14	NIC	ENSMUSG00000012126.17	novel	1573	15	NA	NA	-9	0	intron_retention	TRUE	canonical	3	35	junction_2	25.7307404852087	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAGCTTCACAAGGCTC	NA	False	NA	13	True	AATAAA	-13	NA	133829904	133854085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ENSMUSG00000012126.17_5	chr4	+	2711	13	NIC	ENSMUSG00000012126.17	novel	1573	15	NA	NA	-8	0	intron_retention	FALSE	canonical	3	35	junction_2	26.1709126066835	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAGCTTCACAAGGCTC	NA	False	NA	13	True	AATAAA	-13	NA	133829905	133854085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ENSMUSG00000012126.17_6	chr4	+	1537	15	NIC	ENSMUSG00000012126.17	novel	1573	15	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_4	29.805577481062	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAGCTTCACAAGGCTC	NA	False	NA	13	True	AATAAA	-13	NA	133829914	133854085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836957_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ENSMUSG00000012296.17_17	chr17	-	2507	11	NIC	ENSMUSG00000012296.17	novel	2426	10	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	117.719199793407	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTTAATTTCTTTCTCC	5833	False	NA	-32	True	AATAAA	-16	NA	46593925	46568801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575019_46575117_46575808_46575905_46593271_46593366_46593885
ENSMUSG00000012296.17_2	chr17	-	2636	12	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	112.156620125682	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCTTAATTTCTTTCTC	5833	False	NA	-33	True	AATAAA	-15	NA	46593925	46568802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575019_46575117_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ENSMUSG00000012296.17_3	chr17	-	2542	11	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_7	97.6076328982524	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCTTAATTTCTTTCTC	5830	False	NA	-33	True	AATAAA	-15	NA	46593928	46568802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ENSMUSG00000012296.17_4	chr17	-	2545	11	FSM	ENSMUSG00000012296.17	ENSMUST00000164342.10	2559	11	11	3	-3	0	multi-exon	FALSE	canonical	3	131	junction_7	88.074059745194	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCTTAATTTCTTTCTC	5830	False	NA	-33	True	AATAAA	-15	NA	46593928	46568802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ENSMUSG00000012296.17_5	chr17	-	2412	10	FSM	ENSMUSG00000012296.17	ENSMUST00000225080.2	2412	10	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_7	91.006850915633	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCTTAATTTCTTTCTC	5833	False	NA	-33	True	AATAAA	-15	NA	46593925	46568802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46593271_46593366_46593885
ENSMUSG00000012296.17_7	chr17	-	2411	10	FSM	ENSMUSG00000012296.17	ENSMUST00000012440.14	2426	10	9	6	-2	0	multi-exon	FALSE	canonical	3	80	junction_7	101.660412679532	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCTTAATTTCTTTCTC	5831	False	NA	-33	True	AATAAA	-15	NA	46593927	46568802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593271_46593366_46593885
ENSMUSG00000012396.13_10	chr6	+	2177	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	28	-3	intron_retention	FALSE	canonical	3	354	junction_3	1978.73567938947	460	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTGGTCTTATCTTTTGT	NA	False	NA	15	True	AATAAA	-16	NA	122684554	122691589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690103
ENSMUSG00000012396.13_50	chr6	+	1157	1	ISM	ENSMUSG00000012396.13	ENSMUST00000112581.8	1995	5	5986	2	5907	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTTATCTTTTGTC	NA	False	NA	16	True	AATAAA	-17	NA	122690433	122691590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_122690400_122691600
ENSMUSG00000012396.13_6	chr6	+	2180	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	28	3	28	-3	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	6267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTGGTCTTATCTTTTGT	NA	False	NA	15	True	AATAAA	-16	NA	122684554	122691589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
ENSMUSG00000012405.17_1	chr14	+	701	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	83	1138	-14	-1	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	1942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGCTTAAAGGTGTTA	NA	False	NA	1	True	AATAAA	-16	NA	4198711	4200735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
ENSMUSG00000012405.17_4	chr14	+	822	4	FSM	ENSMUSG00000012405.17	ENSMUST00000079419.12	883	4	59	2	0	-2	multi-exon	FALSE	canonical	3	1636	junction_1	5972.09066315046	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCTGCTTAAAGGTGTT	NA	False	NA	0	True	AATAAA	-15	NA	4198725	4200734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_4198874_4199235_4199418_4199652_4199790_4200379
ENSMUSG00000012405.17_7	chr14	+	796	4	FSM	ENSMUSG00000012405.17	ENSMUST00000100799.9	802	4	5	1	5	-1	multi-exon	FALSE	canonical	3	877	junction_1	6301.70655898508	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGCTTAAAGGTGTTA	NA	False	NA	1	True	AATAAA	-16	NA	4198730	4200735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_4198852_4199235_4199418_4199652_4199790_4200379
ENSMUSG00000012405.17_8	chr14	+	677	3	FSM	ENSMUSG00000012405.17	ENSMUST00000112598.9	802	3	164	-39	164	-1	multi-exon	FALSE	canonical	3	10327	junction_1	2922.5	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGCTTAAAGGTGTTA	NA	False	NA	1	True	AATAAA	-16	NA	4199233	4200735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_4199418_4199652_4199790_4200379
ENSMUSG00000012422.15_0	chr13	+	1274	4	FSM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	612	6803	1	793	multi-exon	FALSE	canonical	3	1033	junction_1	130.199846390078	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATAGCATTTATTAATT	NA	False	NA	NA	False	ATTAAA	-16	NA	90237853	90253573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90252493
ENSMUSG00000012422.15_3	chr13	+	1218	3	ISM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	9240	6809	8601	787	3prime_fragment	FALSE	canonical	3	1303	junction_2	6	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACTATACATAGCATTTA	NA	False	NA	NA	False	ATTAAA	-10	NA	90246481	90253567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_90246591_90249026_90249062_90252493
ENSMUSG00000012422.15_5	chr13	+	2512	1	ISM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	16237	4386	15598	3210	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTGTCAGAAGCCGTCT	NA	False	NA	NA	False	AATAAA	-4	NA	90253478	90255990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_90253500_90256000
ENSMUSG00000012429.10_0	chr13	+	891	2	FSM	ENSMUSG00000012429.10	ENSMUST00000049744.4	2672	2	10	1771	-10	78	multi-exon	FALSE	canonical	3	374	junction_1	0	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTGATTTTTGTGAATA	NA	False	NA	17	True	AATAAA	-18	NA	17870007	17871919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_17870406_17871426
ENSMUSG00000012429.10_2	chr13	+	1901	1	FSM	ENSMUSG00000012429.10	ENSMUST00000222292.2	4316	1	1	2414	1	78	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTGATTTTTGTGAATA	NA	False	NA	17	True	AATAAA	-18	NA	17870018	17871919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_17870000_17871900
ENSMUSG00000012443.5_0	chr19	+	4842	22	FSM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	-24	1	-24	-1	multi-exon	TRUE	canonical	3	280	junction_17	34.0452546631592	668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTCGTGCTGCCTGTACA	NA	False	NA	7	True	ATTAAA	-14	NA	37364826	37410306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923_37398050_37398173_37398333_37398974_37399082_37399778_37400059_37401568_37401792_37404937_37405081_37406348_37406466_37408706
ENSMUSG00000012443.5_46	chr19	+	4246	18	ISM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	10612	0	10612	0	3prime_fragment	FALSE	canonical	3	280	junction_13	36.8988142268757	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGTGCTGCCTGTACAT	NA	False	NA	8	True	ATTAAA	-15	NA	37375462	37410307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923_37398050_37398173_37398333_37398974_37399082_37399778_37400059_37401568_37401792_37404937_37405081_37406348_37406466_37408706
ENSMUSG00000012443.5_67	chr19	+	1376	1	ISM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	44081	0	18303	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGTGCTGCCTGTACAT	198	False	NA	8	True	ATTAAA	-15	NA	37408931	37410307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_37408900_37410300
ENSMUSG00000012483.5_0	chr6	-	601	4	FSM	ENSMUSG00000012483.5	ENSMUST00000012627.5	670	4	50	19	17	-19	multi-exon	FALSE	canonical	3	1410	junction_2	59.4474557908074	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAATCAAAATATGAT	2	True	NA	-30	True	TATAAA	-39	NA	8259123	8255954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_8256248_8256694_8256804_8257686_8257762_8258999
ENSMUSG00000012483.5_2	chr6	-	449	3	ISM	ENSMUSG00000012483.5	ENSMUST00000012627.5	670	4	1440	19	1407	-19	3prime_fragment	FALSE	canonical	3	1410	junction_2	3	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAATCAAAATATGAT	1392	False	NA	-30	True	TATAAA	-39	NA	8257733	8255954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_8256248_8256694_8256804_8257686
ENSMUSG00000012535.15_10	chr6	-	4133	24	FSM	ENSMUSG00000012535.15	ENSMUST00000170350.8	3590	24	187	-730	-1	-14	multi-exon	FALSE	canonical	3	27	junction_23	180.197874854504	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTTAAAATTTTACCAG	2	True	NA	-16	True	NA	NA	NA	29609623	29540839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29599538_29599698_29609364
ENSMUSG00000012535.15_3	chr6	-	3919	23	FSM	ENSMUSG00000012535.15	ENSMUST00000012679.15	4251	23	270	62	-4	-62	multi-exon	FALSE	canonical	3	521	junction_17	54.5301683125804	1209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9	True	NA	-64	True	AATAAA	-12	NA	29609616	29540887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
ENSMUSG00000012609.20_0	chr12	+	4695	33	FSM	ENSMUSG00000012609.20	ENSMUST00000040273.14	4147	33	3	-551	3	0	multi-exon	FALSE	canonical	3	15	junction_32	9.07864940395872	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGTTTTTTTTCTAT	NA	False	NA	5	True	AATAAA	-15	NA	85871745	86100533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85892020_85892128_85896024_85896156_85904153_85904237_85910337_85910408_85911298_85911384_85923264_85923367_85925160_85925253_85926141_85926250_85935932_85936015_85937794_85937857_85938889_85938985_85945766_85945881_85946166_85946259_85955566_85955630_85959325_85959365_85964448_85964607_85965704_85966012_85969731_85969853_85972413_85972561_85973575_85973680_85976637_85976766_85979498_85979583_85980055_85980449_85986099_85986285_86003339_86003495_86042774_86042971_86059421_86059637_86067294_86067378_86099916
ENSMUSG00000012609.20_1	chr12	+	4821	34	FSM	ENSMUSG00000012609.20	ENSMUST00000040179.14	5081	34	259	1	0	0	multi-exon	TRUE	canonical	3	18	junction_33	8.97020883060403	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGTTTTTTTTCTAT	NA	False	NA	5	True	AATAAA	-15	NA	85871742	86100533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85892020_85892128_85896024_85896156_85904153_85904237_85910337_85910408_85911298_85911384_85923264_85923367_85925160_85925253_85926141_85926250_85935932_85936015_85937794_85937857_85938889_85938985_85945766_85945881_85946166_85946259_85955566_85955630_85959325_85959365_85964448_85964607_85965704_85966012_85969731_85969853_85972413_85972561_85973575_85973680_85976637_85976766_85979498_85979583_85980055_85980449_85986099_85986285_86003339_86003495_86042774_86042971_86059421_86059637_86067294_86067378_86070993_86071117_86099916
ENSMUSG00000012640.17_0	chr7	-	4183	5	FSM	ENSMUSG00000012640.17	ENSMUST00000107986.9	4184	5	-5	6	3	-6	multi-exon	FALSE	canonical	3	60	junction_4	14.2894191624432	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCATTCACTGTTCATAT	NA	False	NA	-6	True	AATAAA	-10	NA	42962684	42945952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454_42960610_42962527
ENSMUSG00000012640.17_1	chr7	-	4093	4	FSM	ENSMUSG00000012640.17	ENSMUST00000048015.14	4333	4	234	6	234	-6	multi-exon	FALSE	canonical	3	88	junction_2	3.29983164553722	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCATTCACTGTTCATAT	NA	False	NA	-6	True	AATAAA	-10	NA	42960676	42945952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454
ENSMUSG00000012640.17_3	chr7	-	4248	5	NIC	ENSMUSG00000012640.17	novel	4363	6	NA	NA	3	-6	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	30.589009464185	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCATTCACTGTTCATAT	NA	False	NA	-6	True	AATAAA	-10	NA	42962684	42945952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454_42960675_42962527
ENSMUSG00000012640.17_5	chr7	-	4147	5	NNC	ENSMUSG00000012640.17	novel	4363	6	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	37.0607609204128	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTCACTGTTCATATTGC	NA	False	NA	-3	True	AATAAA	-13	NA	42962521	42945949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454_42960675_42962468
ENSMUSG00000012640.17_6	chr7	-	2235	1	NIC	ENSMUSG00000012640.17	novel	907	6	NA	NA	12728	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCACTGTTCATATTGCTT	6226	False	NA	-1	True	AATAAA	-15	NA	42948182	42945947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_42945900_42948200
ENSMUSG00000012705.17_1	chr8	+	168	1	Genic_Genomic	ENSMUSG00000012705.17	novel	NA	NA	NA	NA	4200	27	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTAAAAAGGTCATCCT	NA	False	NA	NA	False	NA	NA	NA	3709969	3710137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_3710000_3710100
ENSMUSG00000012848.16_1	chr7	+	730	6	FSM	ENSMUSG00000012848.16	ENSMUST00000004554.14	761	6	28	3	0	-1	multi-exon	FALSE	canonical	3	14799	junction_5	1601.25238485381	4365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCTTCCTGTGTGCTTGT	NA	False	NA	35	True	AATAAA	-21	NA	12656244	12660610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
ENSMUSG00000013033.17_1	chr8	+	6181	23	FSM	ENSMUSG00000013033.17	ENSMUST00000141158.8	8181	23	19	1981	19	-14	multi-exon	FALSE	canonical	3	37	junction_4	11.1024530086786	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAAAAGAC	3091	False	NA	NA	False	NA	NA	NA	84626752	84666602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84627554_84642035_84642198_84645448_84645663_84649627_84649738_84656092_84656894_84657590_84657906_84658241_84658346_84658596_84658783_84659000_84659040_84659136_84659321_84659468_84659592_84660054_84660270_84660505_84660677_84661055_84661266_84661346_84661568_84661692_84661760_84662170_84662263_84662648_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
ENSMUSG00000013033.17_12	chr8	+	4569	19	ISM	ENSMUSG00000013033.17	ENSMUST00000131717.2	5152	21	5638	38	-4788	-14	3prime_fragment	FALSE	canonical	3	47	junction_1	9.10162107389884	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAAAAGAC	2971	False	NA	NA	False	NA	NA	NA	84656417	84666602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84656894_84657590_84657906_84658241_84658346_84658596_84658783_84659000_84659040_84659136_84659321_84659468_84659592_84660054_84660270_84660505_84660677_84661055_84661266_84661346_84661568_84661692_84661760_84662170_84662263_84662648_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
ENSMUSG00000013033.17_14	chr8	+	3906	18	ISM	ENSMUSG00000013033.17	ENSMUST00000131717.2	5152	21	6998	38	-3428	-14	3prime_fragment	FALSE	canonical	3	55	junction_2	8.10869071132344	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAAAAGAC	4331	False	NA	NA	False	NA	NA	NA	84657777	84666602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84657906_84658241_84658346_84658596_84658783_84659000_84659040_84659136_84659321_84659468_84659592_84660054_84660270_84660505_84660677_84661055_84661266_84661346_84661568_84661692_84661760_84662170_84662263_84662648_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
ENSMUSG00000013033.17_17	chr8	+	3593	16	ISM	ENSMUSG00000013033.17	ENSMUST00000131717.2	5152	21	7898	38	-2528	-14	3prime_fragment	FALSE	canonical	3	55	junction_4	7.98164561144296	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAAAAGAC	728	False	NA	NA	False	NA	NA	NA	84658677	84666602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84658783_84659000_84659040_84659136_84659321_84659468_84659592_84660054_84660270_84660505_84660677_84661055_84661266_84661346_84661568_84661692_84661760_84662170_84662263_84662648_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
ENSMUSG00000013033.17_19	chr8	+	3417	14	ISM	ENSMUSG00000013033.17	ENSMUST00000131717.2	5152	21	8389	38	-2037	-14	3prime_fragment	FALSE	canonical	3	55	junction_2	7.48805755300797	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAAAAGAC	1219	False	NA	NA	False	NA	NA	NA	84659168	84666602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84659321_84659468_84659592_84660054_84660270_84660505_84660677_84661055_84661266_84661346_84661568_84661692_84661760_84662170_84662263_84662648_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
ENSMUSG00000013033.17_2	chr8	+	6208	24	FSM	ENSMUSG00000013033.17	ENSMUST00000045393.15	5643	24	-613	48	-3	-24	multi-exon	FALSE	canonical	1	3	junction_4	19.7858095833748	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAATGGAAAAGGAAAA	3069	False	NA	NA	False	NA	NA	NA	84626730	84666592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84627554_84642035_84642198_84645448_84645663_84649627_84649738_84652890_84652906_84656092_84656894_84657590_84657906_84658241_84658346_84658596_84658783_84659000_84659040_84659136_84659321_84659468_84659592_84660054_84660270_84660505_84660677_84661055_84661266_84661346_84661568_84661692_84661760_84662170_84662263_84662648_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
ENSMUSG00000013033.17_21	chr8	+	3265	13	ISM	ENSMUSG00000013033.17	ENSMUST00000131717.2	5152	21	8689	38	-1737	-14	3prime_fragment	FALSE	canonical	3	55	junction_1	7.51110289282917	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAAAAGAC	1519	False	NA	NA	False	NA	NA	NA	84659468	84666602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84659592_84660054_84660270_84660505_84660677_84661055_84661266_84661346_84661568_84661692_84661760_84662170_84662263_84662648_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
ENSMUSG00000013033.17_22	chr8	+	3037	12	ISM	ENSMUSG00000013033.17	ENSMUST00000131717.2	5152	21	9380	38	-1046	-14	3prime_fragment	FALSE	canonical	3	60	junction_8	6.37920174285412	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAAAAGAC	2210	False	NA	NA	False	NA	NA	NA	84660159	84666602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84660270_84660505_84660677_84661055_84661266_84661346_84661568_84661692_84661760_84662170_84662263_84662648_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
ENSMUSG00000013033.17_26	chr8	+	2552	9	ISM	ENSMUSG00000013033.17	ENSMUST00000131717.2	5152	21	10590	9	164	-9	3prime_fragment	FALSE	canonical	3	60	junction_5	7.22733526273688	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGAAAATCTCATCACTT	957	False	NA	NA	False	NA	NA	NA	84661369	84666631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84661568_84661692_84661760_84662170_84662263_84662648_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
ENSMUSG00000013033.17_27	chr8	+	4054	6	ISM	ENSMUSG00000013033.17	ENSMUST00000131717.2	5152	21	11954	-1935	-50	-8	3prime_fragment	FALSE	canonical	3	60	junction_2	5.91269819963779	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGATAGAGTGGTGTGAT	2321	False	NA	5	True	AATAAA	-18	NA	84662733	84668575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
ENSMUSG00000013033.17_28	chr8	+	2949	1	ISM	ENSMUSG00000013033.17	ENSMUST00000141158.8	8181	23	38892	9	1342	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGATAGAGTGGTGTGA	507	False	NA	4	True	AATAAA	-17	NA	84665625	84668574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84665600_84668600
ENSMUSG00000013033.17_30	chr8	+	3696	3	ISM	ENSMUSG00000013033.17	ENSMUST00000131717.2	5152	21	13546	-1935	42	-8	3prime_fragment	FALSE	canonical	3	74	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGATAGAGTGGTGTGAT	75	False	NA	5	True	AATAAA	-18	NA	84664325	84668575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84664407_84664544_84664563_84664978
ENSMUSG00000013033.17_4	chr8	+	2221	5	ISM	ENSMUSG00000013033.17	ENSMUST00000132500.8	5719	22	-627	9606	3	329	5prime_fragment	FALSE	canonical	3	37	junction_4	17.1318416990118	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATCCTCCCTTCTTCGA	3075	False	NA	NA	False	AAGAAA	-16	NA	84626736	84657010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84627554_84642035_84642198_84645448_84645663_84649627_84649738_84656092
ENSMUSG00000013076.18_0	chr9	-	3079	1	ISM	ENSMUSG00000013076.18	ENSMUST00000013220.8	8957	13	69951	11	13996	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGCAAATTGGCTCCT	NA	False	NA	-10	True	AATAAA	-6	NA	14456351	14453272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_14453300_14456400
ENSMUSG00000013076.18_1	chr9	-	8814	13	FSM	ENSMUSG00000013076.18	ENSMUST00000013220.8	8957	13	135	8	135	-8	multi-exon	FALSE	canonical	2	6	junction_12	3.15788255358274	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCAAATTGGCTCCTCTT	NA	False	NA	-7	True	AATAAA	-9	NA	14526167	14453269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_14459195_14459826_14460103_14461687_14461918_14462917_14463044_14466869_14467061_14469754_14469905_14473370_14473517_14482918_14483009_14483970_14484116_14486446_14486736_14504049_14505008_14507746_14507897_14526029
ENSMUSG00000013076.18_16	chr9	-	9054	15	NNC	ENSMUSG00000013076.18	novel	3046	14	NA	NA	-18015	-11	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_14	4.0082822418852	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGCAAATTGGCTCCT	237	False	NA	-10	True	AATAAA	-6	NA	14574367	14453272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_14459195_14459826_14460103_14461687_14461918_14462917_14463044_14466869_14467061_14469754_14469905_14473370_14473517_14482918_14483009_14483970_14484116_14486446_14486736_14504049_14505008_14507746_14507897_14545197_14545249_14556215_14556343_14574164
ENSMUSG00000013076.18_3	chr9	-	7903	11	ISM	ENSMUSG00000013076.18	ENSMUST00000013220.8	8957	13	21923	3	21503	-3	3prime_fragment	FALSE	canonical	2	7	junction_10	2.95972971738975	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGCTCCTCTTTTACC	NA	False	NA	-2	True	AATAAA	-14	NA	14504379	14453264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_14459195_14459826_14460103_14461687_14461918_14462917_14463044_14466869_14467061_14469754_14469905_14473370_14473517_14482918_14483009_14483970_14484116_14486446_14486736_14504049
ENSMUSG00000013089.16_0	chr16	-	3184	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24737	-2	-9948	2	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	1490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCATTCCTGCAACCTGCC	NA	False	NA	-18	True	AATAAA	-17	NA	22230527	22200063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
ENSMUSG00000013089.16_1	chr16	-	3865	13	FSM	ENSMUSG00000013089.16	ENSMUST00000079601.13	3975	13	105	5	2	2	multi-exon	FALSE	canonical	3	174	junction_9	424.638105724549	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCATTCCTGCAACCTGCC	7591	False	NA	-18	True	AATAAA	-17	NA	22258364	22200063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22254626_22254678_22254769_22254818_22254950_22255039_22255187_22255311_22258266
ENSMUSG00000013089.16_2	chr16	-	3397	8	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	23600	-2	-11085	2	3prime_fragment	FALSE	canonical	3	304	junction_7	264.973159980788	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCATTCCTGCAACCTGCC	NA	False	NA	-18	True	AATAAA	-17	NA	22231664	22200063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594
ENSMUSG00000013089.16_3	chr16	-	1784	1	ISM	ENSMUSG00000013089.16	ENSMUST00000079601.13	3975	13	56622	5	18732	2	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCATTCCTGCAACCTGCC	NA	False	NA	-18	True	AATAAA	-17	NA	22201847	22200063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_22200100_22201800
ENSMUSG00000013089.16_6	chr16	-	2908	6	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	34714	-2	29	2	3prime_fragment	TRUE	canonical	3	940	junction_4	67.4637680536746	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCATTCCTGCAACCTGCC	NA	False	NA	-18	True	AATAAA	-17	NA	22220550	22200063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421
ENSMUSG00000013150.16_0	chr8	-	2039	3	FSM	ENSMUSG00000013150.16	ENSMUST00000013294.16	4352	3	51	2262	-17	1301	multi-exon	FALSE	canonical	3	21	junction_1	4	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGACATCATGGTGTGTG	NA	False	NA	NA	False	AGTAAA	-14	NA	106485245	106442747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106444283_106454619_106454964_106485085
ENSMUSG00000013150.16_1	chr8	-	181	1	ISM	ENSMUSG00000013150.16	ENSMUST00000013294.16	4352	3	44430	200	44362	-200	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTTTTTTTAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	106440866	106440685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106440700_106440900
ENSMUSG00000013150.16_2	chr8	-	1810	2	ISM	ENSMUSG00000013150.16	ENSMUST00000013294.16	4352	3	30407	2257	30339	1306	3prime_fragment	FALSE	canonical	3	21	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCATGGTGTGTGGTCGT	NA	False	NA	NA	False	AGTAAA	-19	NA	106454889	106442742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106444283_106454619
ENSMUSG00000013150.16_3	chr8	-	771	1	ISM	ENSMUSG00000013150.16	ENSMUST00000013294.16	4352	3	41773	2267	41705	1296	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAACTGACATCATGGT	NA	False	NA	NA	False	AGTAAA	-9	NA	106443523	106442752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106442800_106443500
ENSMUSG00000013150.16_4	chr8	-	2227	4	FSM	ENSMUSG00000013150.16	ENSMUST00000155038.3	951	4	25	-1301	-9	1301	multi-exon	FALSE	canonical	2	4	junction_2	11.1455023315337	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGACATCATGGTGTGTG	NA	False	NA	NA	False	AGTAAA	-14	NA	106485237	106442747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106444283_106449480_106449677_106454619_106454964_106485085
ENSMUSG00000013150.16_5	chr8	-	4031	2	ISM	ENSMUSG00000013150.16	ENSMUST00000155038.3	951	4	23	7038	-11	2646	5prime_fragment	FALSE	canonical	3	29	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTAAATATGCATGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	106485239	106451086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106454964_106485085
ENSMUSG00000013155.11_0	chr8	-	1295	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	23	-1	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_7	45.9436211734623	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTGTTCCATAGGA	NA	False	NA	-16	True	ATTAAA	-13	NA	106434819	106430284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434788
ENSMUSG00000013155.11_1	chr8	-	1327	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	39	-1	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_7	49.3529562003563	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTGTTCCATAGGA	NA	False	NA	-16	True	ATTAAA	-13	NA	106434738	106430284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434675
ENSMUSG00000013155.11_4	chr8	-	1443	7	FSM	ENSMUSG00000013155.11	ENSMUST00000013299.11	1275	7	-169	1	43	-1	multi-exon	FALSE	canonical	3	158	junction_2	11.5854314646552	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTGTTCCATAGGA	NA	False	NA	-16	True	ATTAAA	-13	NA	106434734	106430284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455
ENSMUSG00000013155.11_8	chr8	-	1529	6	FSM	ENSMUSG00000013155.11	ENSMUST00000212716.2	1568	6	39	0	39	0	multi-exon	FALSE	canonical	3	158	junction_2	9.8508882848198	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434738	106430282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180
ENSMUSG00000013160.8_1	chr8	-	1597	8	FSM	ENSMUSG00000013160.8	ENSMUST00000013304.8	1629	8	27	5	27	-5	multi-exon	FALSE	canonical	3	556	junction_1	38.5115938016444	558	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAACCCTGCTGTCTGTCT	NA	False	NA	-15	True	AATAAA	-13	NA	106292652	106251101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106251697_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446_106257626_106265952_106266125_106292414
ENSMUSG00000013236.18_0	chr17	-	6779	33	FSM	ENSMUSG00000013236.18	ENSMUST00000067538.6	6855	33	77	-1	-17	-1	multi-exon	FALSE	canonical	3	94	junction_23	73.3638194207472	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAGTGCATGGAGTGCTC	NA	False	NA	-6	True	ATTAAA	-15	NA	56783406	56719431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56732326_56732927_56733386_56733505_56734938_56735133_56735851_56736158_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56783339
ENSMUSG00000013236.18_18	chr17	-	5571	29	FSM	ENSMUSG00000013236.18	ENSMUST00000086828.10	5608	29	36	1	-19	-1	multi-exon	FALSE	canonical	3	62	junction_28	67.8619077274443	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAGTGCATGGAGTGCTC	NA	False	NA	-6	True	ATTAAA	-15	NA	56769180	56719431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56769103
ENSMUSG00000013236.18_2	chr17	-	5567	29	NIC	ENSMUSG00000013236.18	novel	6855	33	NA	NA	-23	-1	combination_of_known_junctions	FALSE	canonical	3	72	junction_19	61.8340747979821	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAGTGCATGGAGTGCTC	NA	False	NA	-6	True	ATTAAA	-15	NA	56783412	56719431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56783339
ENSMUSG00000013236.18_20	chr17	-	7149	32	NIC	ENSMUSG00000013236.18	novel	6855	33	NA	NA	12	-1	intron_retention	FALSE	canonical	3	94	junction_22	70.4444046885562	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAGTGCATGGAGTGCTC	NA	False	NA	-6	True	ATTAAA	-15	NA	56783427	56719431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56732927_56733386_56733505_56734938_56735133_56735851_56736158_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56783339
ENSMUSG00000013236.18_21	chr17	-	1879	7	ISM	ENSMUSG00000013236.18	ENSMUST00000086828.10	5608	29	44797	1	-2386	-1	3prime_fragment	FALSE	canonical	3	250	junction_6	31.2765442819731	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAGTGCATGGAGTGCTC	NA	False	NA	-6	True	ATTAAA	-15	NA	56724419	56719431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225
ENSMUSG00000013236.18_22	chr17	-	3960	20	ISM	ENSMUSG00000013236.18	ENSMUST00000067538.6	6855	33	50786	-1	-236	-1	3prime_fragment	FALSE	canonical	3	104	junction_19	52.4364805029345	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAGTGCATGGAGTGCTC	NA	False	NA	-6	True	ATTAAA	-15	NA	56732697	56719431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56732326
ENSMUSG00000013236.18_23	chr17	-	6808	33	NIC	ENSMUSG00000013236.18	novel	6855	33	NA	NA	17	-1	intron_retention	FALSE	canonical	3	62	junction_32	77.4089939461171	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAGTGCATGGAGTGCTC	NA	False	NA	-6	True	ATTAAA	-15	NA	56769199	56719431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56732326_56732927_56733386_56733505_56734938_56735133_56735851_56736158_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56769103
ENSMUSG00000013236.18_27	chr17	-	3766	19	ISM	ENSMUSG00000013236.18	ENSMUST00000086828.10	5608	29	37062	1	-21	-1	3prime_fragment	FALSE	canonical	3	225	junction_14	33.16536383073	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAGTGCATGGAGTGCTC	NA	False	NA	-6	True	ATTAAA	-15	NA	56732154	56719431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879
ENSMUSG00000013275.10_0	chr1	+	4646	11	FSM	ENSMUSG00000013275.10	ENSMUST00000086559.7	4697	11	47	4	47	-4	multi-exon	FALSE	canonical	3	130	junction_4	13.4402380931292	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTGTATCCCTGTGT	5249	False	NA	19	True	AATAAA	-16	NA	131755761	131776599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_131756132_131757748_131758729_131766852_131766961_131767914_131767987_131768592_131768738_131768865_131769013_131769722_131769871_131770686_131770767_131771656_131771792_131772075_131772225_131774287
ENSMUSG00000013275.10_1	chr1	+	3901	10	ISM	ENSMUSG00000013275.10	ENSMUST00000086559.7	4697	11	2409	4	2409	-4	3prime_fragment	FALSE	canonical	3	130	junction_3	12.7463381330667	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTGTATCCCTGTGT	7611	False	NA	19	True	AATAAA	-16	NA	131758123	131776599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_131758729_131766852_131766961_131767914_131767987_131768592_131768738_131768865_131769013_131769722_131769871_131770686_131770767_131771656_131771792_131772075_131772225_131774287
ENSMUSG00000013275.10_17	chr1	+	1737	1	ISM	ENSMUSG00000013275.10	ENSMUST00000086559.7	4697	11	19148	4	4285	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTGTATCCCTGTGT	NA	False	NA	19	True	AATAAA	-16	NA	131774862	131776599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_131774900_131776600
ENSMUSG00000013415.10_0	chr11	-	3002	1	ISM	ENSMUSG00000013415.10	ENSMUST00000013559.3	8378	15	45771	5	7666	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	679	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGCTGAGTGTGTCTGT	NA	False	NA	-10	True	AATAAA	-14	NA	95850995	95847993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_95848000_95851000
ENSMUSG00000013415.10_10	chr11	-	1975	14	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-1	302	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	177.836138924832	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGATGGTTTGTTTCT	NA	False	NA	NA	False	AATAAA	-25	NA	95873438	95853959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
ENSMUSG00000013415.10_2	chr11	-	2403	15	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	1	302	at_least_one_novel_splicesite	FALSE	canonical	3	191	junction_5	125.171983727207	221	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGATGGTTTGTTTCT	NA	False	NA	NA	False	AATAAA	-25	NA	95896765	95853959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ENSMUSG00000013415.10_7	chr11	-	2408	15	FSM	ENSMUSG00000013415.10	ENSMUST00000013559.3	8378	15	-1	5971	-1	302	multi-exon	FALSE	canonical	3	452	junction_5	71.7782867514933	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGATGGTTTGTTTCT	NA	False	NA	NA	False	AATAAA	-25	NA	95896767	95853959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ENSMUSG00000013418.9_0	chr11	-	4080	11	FSM	ENSMUSG00000013418.9	ENSMUST00000038343.7	1722	11	18	-2376	18	2376	multi-exon	FALSE	canonical	3	16	junction_4	6.67907179179862	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGGACTCGGGTGGTGT	2908	False	NA	-7	True	NA	NA	NA	95805699	95754392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
ENSMUSG00000013418.9_1	chr11	-	3182	12	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	18	2378	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.1068669888635	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGACTCGGGTGGTGTGC	2908	False	NA	-5	True	NA	NA	NA	95805699	95754390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_95755699_95756598_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
ENSMUSG00000013418.9_9	chr11	-	1591	3	ISM	ENSMUSG00000013418.9	ENSMUST00000038343.7	1722	11	11	23854	11	-23854	5prime_fragment	FALSE	canonical	3	31	junction_1	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATCTTTTTAAAAAAAAA	2901	False	NA	NA	False	NA	NA	NA	95805706	95780622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_95781937_95782583_95782800_95805645
ENSMUSG00000013419.8_0	chr9	+	4085	6	NIC	ENSMUSG00000013419.8	novel	2136	7	NA	NA	-506	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	7.7614431647729	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGTGTGGGCAGGCCCA	858	False	NA	NA	False	AATAAA	-18	NA	121587889	121598118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_121588505_121591684_121593188_121594548_121594697_121595532_121595649_121596304_121596450_121596560
ENSMUSG00000013419.8_1	chr9	+	3684	6	FSM	ENSMUSG00000013419.8	ENSMUST00000093772.4	6353	6	-21	2690	-21	-2	multi-exon	FALSE	canonical	2	7	junction_1	5.5281099844341	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGTGTGGGCAGGCCCA	2046	False	NA	NA	False	AATAAA	-18	NA	121589077	121598118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121589292_121591684_121593188_121594548_121594697_121595532_121595649_121596304_121596450_121596560
ENSMUSG00000013419.8_6	chr9	+	3628	5	ISM	ENSMUSG00000013419.8	ENSMUST00000093772.4	6353	6	2823	2295	-1161	393	3prime_fragment	FALSE	canonical	3	11	junction_4	4.38035386698381	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATACTAAATAAAACGAAAAA	4890	False	NA	NA	False	NA	NA	NA	121591921	121598513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_121593188_121594548_121594697_121595532_121595649_121596304_121596450_121596560
ENSMUSG00000013465.20_0	chr2	-	2535	13	FSM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	93	9	-15	-5	multi-exon	TRUE	canonical	3	539	junction_7	54.5501807716732	1082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCCATGGTGAGGAAT	NA	False	NA	NA	False	AATAAA	-11	NA	25101408	25089732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
ENSMUSG00000013465.20_8	chr2	-	217	1	ISM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	11553	8	3665	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCCATGGTGAGGAATC	5212	False	NA	NA	False	AATAAA	-12	NA	25089948	25089731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25089700_25089900
ENSMUSG00000013495.16_0	chr5	+	1863	11	FSM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	11	2082	11	29	multi-exon	FALSE	canonical	3	71	junction_10	21.559220765139	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATTGTTTTTACCCAT	NA	False	NA	50	True	NA	NA	NA	108777708	108794566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
ENSMUSG00000013495.16_1	chr5	+	1425	10	ISM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	-4	3681	-4	-15	5prime_fragment	FALSE	canonical	3	99	junction_1	13.0251418797514	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTTGCATCTGACACTA	NA	False	NA	13	True	ATTAAA	-21	NA	108777693	108792967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
ENSMUSG00000013495.16_2	chr5	+	1543	10	ISM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	-154	1568	23	-13	5prime_fragment	FALSE	canonical	3	25	junction_1	34.906223577529	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGCATCTGACACTACA	NA	False	NA	15	True	ATTAAA	-23	NA	108777720	108792969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
ENSMUSG00000013495.16_6	chr5	+	2527	11	FSM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	-155	-561	22	-31	multi-exon	FALSE	canonical	3	25	junction_1	36.4367945900843	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAATGAAAAATTAC	NA	False	NA	NA	False	NA	NA	NA	108777719	108795098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
ENSMUSG00000013495.16_9	chr5	+	2302	10	NIC	ENSMUSG00000013495.16	novel	3956	11	NA	NA	20	-31	combination_of_known_splicesites	FALSE	canonical	2	5	junction_6	41.1801222574169	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAATGAAAAATTAC	NA	False	NA	NA	False	NA	NA	NA	108777717	108795098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790904_108791070_108792033_108792113_108792422_108792559_108793704
ENSMUSG00000013523.14_0	chr2	-	1314	3	FSM	ENSMUSG00000013523.14	ENSMUST00000152461.2	371	3	-2	-941	-2	0	multi-exon	FALSE	canonical	3	30	junction_2	23.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTGAGGTGGTTTTTT	4144	False	NA	-3	True	AATAAA	-18	NA	170191717	170189067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_170190069_170191101_170191384_170191686
ENSMUSG00000013523.14_1	chr2	-	1416	3	FSM	ENSMUSG00000013523.14	ENSMUST00000156657.8	594	3	-41	-781	14	-2	multi-exon	FALSE	canonical	3	10	junction_2	33.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAATACTTGAGGTGGTTTT	4160	False	NA	-5	True	AATAAA	-16	NA	170191701	170189069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_170190069_170191101_170191384_170191566
ENSMUSG00000013523.14_2	chr2	-	1593	2	ISM	ENSMUSG00000013523.14	ENSMUST00000156657.8	594	3	-33	-783	22	0	intron_retention	FALSE	canonical	3	77	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTGAGGTGGTTTTTT	4168	False	NA	-3	True	AATAAA	-18	NA	170191693	170189067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_170190069_170191101
ENSMUSG00000013523.14_3	chr2	-	1497	4	FSM	ENSMUSG00000013523.14	ENSMUST00000133673.8	688	4	-13	-796	-13	-1	multi-exon	FALSE	canonical	3	7	junction_2	32.9983164553722	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATACTTGAGGTGGTTTTT	NA	False	NA	-4	True	AATAAA	-17	NA	170199046	170189068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_170190069_170191101_170191384_170198167_170198234_170198897
ENSMUSG00000013539.15_0	chr16	-	1475	8	ISM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	19591	0	0	0	3prime_fragment	FALSE	canonical	3	217	junction_3	15.6700676580595	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTGTTGGCTTTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	18142315	18118690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220
ENSMUSG00000013539.15_1	chr16	-	1580	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_8	63.9256159532311	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTGTTGGCTTTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	18161767	18118690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161661
ENSMUSG00000013539.15_2	chr16	-	1647	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	40	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	76.5371641753207	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTGTTGGCTTTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	18165907	18118690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18165734
ENSMUSG00000013539.15_3	chr16	-	1492	9	FSM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	130	0	2	0	multi-exon	FALSE	canonical	3	71	junction_8	57.8273291792038	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTGTTGGCTTTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	18161776	18118690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161758
ENSMUSG00000013539.15_31	chr16	-	188	1	Genic_Genomic	ENSMUSG00000013539.15	novel	NA	NA	NA	NA	-40	2013	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAAATTTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	18124025	18123837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_-_18123800_18124000
ENSMUSG00000013584.6_0	chr9	+	2258	14	FSM	ENSMUSG00000013584.6	ENSMUST00000034723.6	2264	14	-2	8	-2	-8	multi-exon	FALSE	canonical	2	4	junction_1	2.4973358585766	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTTGGGACTGTTTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	71123068	71203517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_71123246_71159879_71159985_71160197_71160339_71162315_71162446_71169012_71169075_71171068_71171198_71171314_71171429_71188885_71188989_71190659_71190845_71192135_71192301_71192397_71192556_71193201_71193277_71200887_71200977_71202892
ENSMUSG00000013593.13_0	chr1	-	1599	13	FSM	ENSMUSG00000013593.13	ENSMUST00000013737.13	1623	13	17	7	17	-7	multi-exon	FALSE	canonical	3	1142	junction_12	107.460457843804	1324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTCAGCTTGTAATGTGT	NA	False	NA	-8	True	ATTAAA	-21	NA	171074674	171062428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
ENSMUSG00000013611.15_1	chr15	-	2124	14	NNC	ENSMUSG00000013611.15	novel	2696	14	NA	NA	-4583	-242	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	6.43492688565058	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATCTCGCCAATTTGAA	NA	False	NA	NA	False	NA	NA	NA	36560301	36504799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_36505617_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36560155
ENSMUSG00000013611.15_3	chr15	-	2222	15	NNC	ENSMUSG00000013611.15	novel	2696	14	NA	NA	-4590	-248	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	7.66418918858136	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATAATCATCTCGCCAA	NA	False	NA	NA	False	NA	NA	NA	36560308	36504805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_36505617_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36556627_36556725_36560155
ENSMUSG00000013611.15_4	chr15	-	2205	15	NNC	ENSMUSG00000013611.15	novel	2344	14	NA	NA	-4570	-248	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	8.53444401785363	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATAATCATCTCGCCAA	NA	False	NA	NA	False	NA	NA	NA	36560288	36504805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_36505620_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36556627_36556725_36560155
ENSMUSG00000013622.16_0	chr5	+	945	7	FSM	ENSMUSG00000013622.16	ENSMUST00000013766.13	966	7	15	6	2	0	multi-exon	FALSE	canonical	3	250	junction_6	22.1108319357027	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAATGCTGCCGTACCTG	923	False	NA	6	True	AATAAA	-19	NA	31205993	31211961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ENSMUSG00000013622.16_2	chr5	+	1967	6	NIC	ENSMUSG00000013622.16	novel	966	7	NA	NA	12	0	intron_retention	FALSE	canonical	3	250	junction_5	24.1859463325296	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAATGCTGCCGTACCTG	606	False	NA	6	True	AATAAA	-19	NA	31205676	31211961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ENSMUSG00000013622.16_8	chr5	+	869	7	FSM	ENSMUSG00000013622.16	ENSMUST00000201136.2	894	7	249	-224	249	0	multi-exon	FALSE	canonical	3	6	junction_1	108.191830663051	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAATGCTGCCGTACCTG	1307	False	NA	6	True	AATAAA	-19	NA	31206377	31211961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31206409_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ENSMUSG00000013629.17_1	chr5	+	7117	44	FSM	ENSMUSG00000013629.17	ENSMUST00000013773.12	7137	44	16	4	-15	-4	multi-exon	TRUE	canonical	3	481	junction_6	136.90610173497	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCTGGTTCGTCATGAG	7069	False	NA	14	True	AATAAA	-10	NA	31212139	31235819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216467_31216776_31216949_31217122_31217309_31217442_31217556_31217824_31217971_31218171_31218304_31218460_31218695_31218800_31219023_31219121_31219311_31219544_31219670_31219805_31219937_31224031_31224145_31224324_31224570_31224743_31224991_31225449_31225549_31225706_31225932_31226017_31226201_31226358_31226578_31226862_31227031_31227638_31227822_31227911_31228017_31229208_31229449_31229645_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
ENSMUSG00000013629.17_107	chr5	+	3474	23	ISM	ENSMUSG00000013629.17	ENSMUST00000013773.12	7137	44	14323	1	-1253	-1	3prime_fragment	FALSE	canonical	3	560	junction_7	135.353233924736	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGTTCGTCATGAGTAC	5675	False	NA	17	True	AATAAA	-13	NA	31226446	31235822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_31226578_31226862_31227031_31227638_31227822_31227911_31228017_31229208_31229449_31229645_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
ENSMUSG00000013629.17_123	chr5	+	2825	19	ISM	ENSMUSG00000013629.17	ENSMUST00000013773.12	7137	44	17147	1	-382	-1	3prime_fragment	FALSE	canonical	3	560	junction_3	144.044456872021	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGTTCGTCATGAGTAC	8499	False	NA	17	True	AATAAA	-13	NA	31229270	31235822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_31229449_31229645_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
ENSMUSG00000013629.17_4	chr5	+	7168	45	NIC	ENSMUSG00000013629.17	novel	7137	44	NA	NA	-15	-4	combination_of_known_junctions	FALSE	canonical	3	63	junction_35	184.37253850437	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCTGGTTCGTCATGAG	7069	False	NA	14	True	AATAAA	-10	NA	31212139	31235819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216467_31216776_31216949_31217122_31217309_31217442_31217556_31217824_31217971_31218171_31218304_31218460_31218695_31218800_31219023_31219121_31219311_31219544_31219670_31219805_31219937_31224031_31224145_31224324_31224570_31224743_31224991_31225449_31225549_31225706_31225932_31226017_31226201_31226358_31226578_31226862_31227031_31227638_31227822_31227911_31228017_31229208_31229449_31229645_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31232814_31232866_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
ENSMUSG00000013646.18_0	chr11	+	2980	7	FSM	ENSMUSG00000013646.18	ENSMUST00000073128.7	2977	7	-8	5	-8	0	multi-exon	FALSE	canonical	3	78	junction_1	22.1716786313832	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGATGTTTACTGTCT	461	False	NA	11	True	AATAAA	-12	NA	58221567	58238546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58221619_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
ENSMUSG00000013646.18_14	chr11	+	2931	6	ISM	ENSMUSG00000013646.18	ENSMUST00000073128.7	2977	7	502	5	-23	0	3prime_fragment	FALSE	canonical	3	119	junction_1	8.42377587546108	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGATGTTTACTGTCT	971	False	NA	11	True	AATAAA	-12	NA	58222077	58238546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
ENSMUSG00000013646.18_18	chr11	+	1280	1	ISM	ENSMUSG00000013646.18	ENSMUST00000116376.9	3016	7	15717	8	1129	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGATGTTTACTGTCT	NA	False	NA	11	True	AATAAA	-12	NA	58237266	58238546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_58237300_58238500
ENSMUSG00000013646.18_3	chr11	+	2982	7	FSM	ENSMUSG00000013646.18	ENSMUST00000116376.9	3016	7	25	9	-1	-1	multi-exon	FALSE	canonical	3	32	junction_1	38.7101049110206	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAGTGATGTTTACTGTC	468	False	NA	10	True	AATAAA	-11	NA	58221574	58238545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58221629_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
ENSMUSG00000013662.7_0	chr19	-	2822	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	18	931	7	253	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTATCCAATTACAGCAC	NA	False	NA	NA	False	ATTAAA	-9	NA	32689713	32649968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
ENSMUSG00000013662.7_10	chr19	-	2750	9	ISM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	5324	953	5290	231	3prime_fragment	FALSE	canonical	3	346	junction_2	45.7684389071771	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTTCTATTAAATTCAAT	NA	False	NA	NA	False	NA	NA	NA	32684407	32649990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234
ENSMUSG00000013662.7_3	chr19	-	1277	1	ISM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	38486	931	21025	253	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTATCCAATTACAGCAC	NA	False	NA	NA	False	ATTAAA	-9	NA	32651245	32649968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_32650000_32651200
ENSMUSG00000013663.8_0	chr19	+	5307	9	FSM	ENSMUSG00000013663.8	ENSMUST00000013807.8	8292	9	128	2857	30	-2857	multi-exon	FALSE	canonical	3	125	junction_6	9.39331544237709	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAAGTCTCATTCTTGTC	7721	False	NA	NA	False	TATAAA	-16	NA	32735024	32800703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_32735924_32753414_32753500_32769948_32769994_32775470_32775515_32777260_32777500_32789095_32789238_32792816_32792984_32795235_32795461_32797242
ENSMUSG00000013663.8_16	chr19	+	2482	1	ISM	ENSMUSG00000013663.8	ENSMUST00000013807.8	8292	9	63345	2837	9617	-2837	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTGGGTGTTTTATTA	6035	False	NA	NA	False	ATTAAA	-15	NA	32798241	32800723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_32798200_32800700
ENSMUSG00000013698.13_0	chr1	-	2401	4	FSM	ENSMUSG00000013698.13	ENSMUST00000013842.12	2501	4	94	6	-13	-6	multi-exon	FALSE	canonical	3	108	junction_1	8.37987005998436	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGTACCTGACTGATTCTA	NA	False	NA	-10	True	AATAAA	-14	NA	172034277	172024300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_172026258_172026677_172026834_172027974_172028149_172034163
ENSMUSG00000013701.14_0	chr14	-	1115	7	FSM	ENSMUSG00000013701.14	ENSMUST00000013845.13	1173	7	24	34	-5	22	multi-exon	FALSE	canonical	3	3717	junction_4	299.373048590253	2315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAGAACCAAAGTCATA	NA	False	NA	NA	False	AATAAA	-6	NA	31923831	31902152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
ENSMUSG00000013701.14_5	chr14	-	3114	6	NIC	ENSMUSG00000013701.14	novel	1173	7	NA	NA	-2	22	intron_retention	FALSE	canonical	3	3717	junction_3	323.099736923446	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAGAACCAAAGTCATA	NA	False	NA	NA	False	AATAAA	-6	NA	31923828	31902152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_31902628_31911100_31911212_31913298_31915445_31915810_31915905_31920925_31920985_31923599
ENSMUSG00000013736.17_0	chr6	+	2218	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113248.4	1398	9	-10	-810	-10	-10	multi-exon	FALSE	canonical	3	228	junction_1	232.818296907696	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTCATTCTTTGTCG	NA	False	NA	2	True	AATAAA	-11	NA	106746116	106759425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
ENSMUSG00000013736.17_12	chr6	+	4427	8	ISM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	25	10	21	-10	intron_retention	FALSE	canonical	3	574	junction_1	134.183243578112	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTCATTCTTTGTCG	NA	False	NA	2	True	AATAAA	-11	NA	106746151	106759425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146
ENSMUSG00000013736.17_26	chr6	+	2183	8	ISM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	663	10	322	-10	3prime_fragment	FALSE	canonical	3	738	junction_7	88.0727899327063	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTCATTCTTTGTCG	NA	False	NA	2	True	AATAAA	-11	NA	106746789	106759425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
ENSMUSG00000013736.17_6	chr6	+	2248	9	FSM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	25	10	21	-10	multi-exon	FALSE	canonical	3	574	junction_1	132.149477392081	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTCATTCTTTGTCG	NA	False	NA	2	True	AATAAA	-11	NA	106746151	106759425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
ENSMUSG00000013766.12_3	chr17	+	1030	4	FSM	ENSMUSG00000013766.12	ENSMUST00000172678.8	750	4	-41	-239	-12	-15	multi-exon	FALSE	canonical	3	186	junction_1	129.208702837266	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGCTGTAAAAGTAGTTA	NA	False	NA	5	True	NA	NA	NA	35295865	35297765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35295967_35296110_35296183_35296812_35296939_35297034
ENSMUSG00000013766.12_5	chr17	+	1051	3	FSM	ENSMUSG00000013766.12	ENSMUST00000013910.5	1142	3	75	16	75	-16	multi-exon	FALSE	canonical	3	419	junction_2	34.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGCTGTAAAAGTAGTT	NA	False	NA	4	True	NA	NA	NA	35295987	35297764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35296183_35296812_35296939_35297034
ENSMUSG00000013766.12_7	chr17	+	1010	4	NIC	ENSMUSG00000013766.12	novel	750	4	NA	NA	-23	-15	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	215.629826838084	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGCTGTAAAAGTAGTTA	NA	False	NA	5	True	NA	NA	NA	35295854	35297765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35295936_35296110_35296183_35296812_35296939_35297034
ENSMUSG00000013787.16_127	chr17	+	978	5	ISM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	12278	6	274	1	3prime_fragment	FALSE	canonical	3	414	junction_3	11.4972822875669	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACTGTCTGGTGATTG	1795	False	NA	13	True	AATAAA	-14	NA	35130224	35133021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ENSMUSG00000013787.16_2	chr17	+	3863	28	FSM	ENSMUSG00000013787.16	ENSMUST00000114033.9	3882	28	13	6	13	1	multi-exon	TRUE	canonical	3	141	junction_1	79.9703820344975	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACTGTCTGGTGATTG	6683	False	NA	13	True	AATAAA	-14	NA	35117457	35133021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35117517_35118162_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ENSMUSG00000013787.16_3	chr17	+	3894	28	NIC	ENSMUSG00000013787.16	novel	3882	28	NA	NA	12	1	combination_of_known_junctions	TRUE	canonical	3	35	junction_14	98.9641965990974	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACTGTCTGGTGATTG	6682	False	NA	13	True	AATAAA	-14	NA	35117456	35133021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35117517_35118162_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125928_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ENSMUSG00000013787.16_39	chr17	+	3917	26	FSM	ENSMUSG00000013787.16	ENSMUST00000097342.10	3934	26	18	-1	1	1	multi-exon	FALSE	canonical	3	123	junction_8	74.3555135817109	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACTGTCTGGTGATTG	7173	False	NA	13	True	AATAAA	-14	NA	35117947	35133021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ENSMUSG00000013787.16_40	chr17	+	4019	27	FSM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	1	6	1	1	multi-exon	FALSE	canonical	3	188	junction_9	70.6987525311972	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACTGTCTGGTGATTG	7173	False	NA	13	True	AATAAA	-14	NA	35117947	35133021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ENSMUSG00000013787.16_5	chr17	+	3761	27	FSM	ENSMUSG00000013787.16	ENSMUST00000078061.13	3746	27	-17	2	13	1	multi-exon	FALSE	canonical	3	123	junction_9	83.6524314646073	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACTGTCTGGTGATTG	6683	False	NA	13	True	AATAAA	-14	NA	35117457	35133021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35117517_35118162_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ENSMUSG00000013787.16_92	chr17	+	2925	21	ISM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	6230	6	-2	1	3prime_fragment	FALSE	canonical	3	188	junction_3	73.6810694819232	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACTGTCTGGTGATTG	1140	False	NA	13	True	AATAAA	-14	NA	35124176	35133021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ENSMUSG00000013822.8_1	chr9	-	869	3	FSM	ENSMUSG00000013822.8	ENSMUST00000013966.8	888	3	18	1	18	-1	multi-exon	FALSE	canonical	3	357	junction_2	52.5	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCGCCGCTGTACTTCT	7962	False	NA	-9	True	AATAAA	-14	NA	22028450	22024287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_22024976_22025103_22025240_22028405
ENSMUSG00000013822.8_4	chr9	-	824	2	FSM	ENSMUSG00000013822.8	ENSMUST00000166335.2	1053	2	226	3	226	-1	multi-exon	FALSE	canonical	3	462	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCGCCGCTGTACTTCT	NA	False	NA	-9	True	AATAAA	-14	NA	22025239	22024287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_22024976_22025103
ENSMUSG00000013833.16_1	chr10	-	2974	15	FSM	ENSMUSG00000013833.16	ENSMUST00000165684.8	2950	15	-20	-4	3	4	multi-exon	FALSE	canonical	3	153	junction_9	18.1911617921159	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAAAGATTCA	1817	False	NA	NA	False	NA	NA	NA	79744752	79730764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79731245_79731460_79731545_79732181_79732399_79732592_79732786_79733398_79733533_79734069_79734281_79734730_79734938_79735034_79735244_79735930_79736087_79738256_79738363_79738830_79739263_79742598_79742769_79742872_79742981_79743324_79743491_79744651
ENSMUSG00000013833.16_3	chr10	-	2979	15	FSM	ENSMUSG00000013833.16	ENSMUST00000105378.9	3197	15	1	217	1	10	multi-exon	TRUE	canonical	3	23	junction_14	45.000680266967	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGATTCACAGTAC	1815	False	NA	NA	False	NA	NA	NA	79744754	79730758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79731245_79731460_79731545_79732181_79732399_79732592_79732786_79733398_79733533_79734069_79734281_79734730_79734938_79735034_79735244_79735930_79736087_79738256_79738363_79738830_79739263_79742598_79742769_79742872_79742981_79743324_79743488_79744651
ENSMUSG00000013846.11_0	chr15	-	2210	9	FSM	ENSMUSG00000013846.11	ENSMUST00000229028.2	5732	9	106	3416	-12	-6	multi-exon	FALSE	canonical	1	1	junction_4	1.93649167310371	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGTGAACATTTCCCG	NA	False	NA	NA	False	AATAAA	-21	NA	67048573	66978139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_66978680_66980057_66980178_66981454_66981501_66983080_66983261_66984279_66984477_66985355_66986207_67000401_67000457_67024891_67025020_67048480
ENSMUSG00000013858.15_11	chr10	-	1824	9	ISM	ENSMUSG00000013858.15	ENSMUST00000124536.2	1767	10	4337	-238	-763	-2	3prime_fragment	FALSE	canonical	3	104	junction_5	15.8429795177549	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCGTGTAGTTCCTCAGC	NA	False	NA	-19	True	AATAAA	-16	NA	79815537	79812953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_79813688_79813796_79813897_79814021_79814155_79814225_79814440_79814526_79814628_79814701_79814825_79814931_79815043_79815124_79815225_79815329
ENSMUSG00000013858.15_2	chr10	-	2098	11	FSM	ENSMUSG00000013858.15	ENSMUST00000052885.14	2225	11	125	2	125	-2	multi-exon	FALSE	canonical	3	84	junction_4	19.7891384350103	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCGTGTAGTTCCTCAGC	NA	False	NA	-19	True	AATAAA	-16	NA	79820039	79812953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79813688_79813796_79813897_79814021_79814155_79814225_79814310_79814381_79814440_79814526_79814628_79814701_79814825_79814931_79815043_79815124_79815225_79815329_79815588_79819743
ENSMUSG00000013858.15_21	chr10	-	2219	10	NIC	ENSMUSG00000013858.15	novel	2225	11	NA	NA	127	-4	intron_retention	FALSE	canonical	3	84	junction_3	20.8273324690844	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCGTGTAGTTCCTCA	NA	False	NA	-21	True	AATAAA	-14	NA	79820037	79812955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79813688_79813796_79814155_79814225_79814310_79814381_79814440_79814526_79814628_79814701_79814825_79814931_79815043_79815124_79815225_79815329_79815588_79819743
ENSMUSG00000013858.15_3	chr10	-	227	1	ISM	ENSMUSG00000013858.15	ENSMUST00000132080.2	3487	5	1427	2172	1427	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCGTGTAGTTCCTCAGC	NA	False	NA	-19	True	AATAAA	-16	NA	79813180	79812953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_79813000_79813200
ENSMUSG00000013858.15_4	chr10	-	2287	9	NIC	ENSMUSG00000013858.15	novel	1767	10	NA	NA	133	-2	intron_retention	FALSE	canonical	3	99	junction_8	17.8605710994918	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCGTGTAGTTCCTCAGC	NA	False	NA	-19	True	AATAAA	-16	NA	79820031	79812953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79813688_79813796_79814155_79814225_79814440_79814526_79814628_79814701_79814825_79814931_79815043_79815124_79815225_79815329_79815588_79819743
ENSMUSG00000013858.15_6	chr10	-	2216	10	FSM	ENSMUSG00000013858.15	ENSMUST00000124536.2	1767	10	-211	-238	79	-2	multi-exon	FALSE	canonical	3	99	junction_9	17.0257611638915	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCGTGTAGTTCCTCAGC	NA	False	NA	-19	True	AATAAA	-16	NA	79820085	79812953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79813688_79813796_79813897_79814021_79814155_79814225_79814440_79814526_79814628_79814701_79814825_79814931_79815043_79815124_79815225_79815329_79815588_79819743
ENSMUSG00000013858.15_9	chr10	-	915	2	ISM	ENSMUSG00000013858.15	ENSMUST00000126383.2	2656	5	797	1230	630	-2	3prime_fragment	FALSE	canonical	3	132	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCGTGTAGTTCCTCAGC	NA	False	NA	-19	True	AATAAA	-16	NA	79813977	79812953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_79813688_79813796
ENSMUSG00000013878.19_0	chr8	+	3818	8	FSM	ENSMUSG00000013878.19	ENSMUST00000014022.15	3929	8	107	4	-1	-4	multi-exon	FALSE	canonical	3	49	junction_2	13.0243100800474	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTTTTTAATGTGTTAT	NA	False	NA	3	True	AATAAA	-13	NA	26609502	26633895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26609629_26610467_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
ENSMUSG00000013878.19_13	chr8	+	3840	7	NIC	ENSMUSG00000013878.19	novel	1000	8	NA	NA	2	-8	combination_of_known_junctions	FALSE	canonical	2	7	junction_5	31.6999824745833	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAAAAGTTTTTAATGTG	NA	False	NA	-1	True	AATAAA	-9	NA	26609397	26633891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_26609629_26610472_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26629007_26629119_26630838
ENSMUSG00000013878.19_16	chr8	+	3977	8	NIC	ENSMUSG00000013878.19	novel	741	5	NA	NA	7	-8	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	26.1799112890407	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAAAAGTTTTTAATGTG	NA	False	NA	-1	True	AATAAA	-9	NA	26609698	26633891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_26609988_26610467_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
ENSMUSG00000013878.19_17	chr8	+	3989	8	NIC	ENSMUSG00000013878.19	novel	741	5	NA	NA	-6	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	27.4226184016042	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTTTTTAATGTGTTAT	NA	False	NA	3	True	AATAAA	-13	NA	26609685	26633895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_26609988_26610472_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
ENSMUSG00000013878.19_23	chr8	+	2332	1	ISM	ENSMUSG00000013878.19	ENSMUST00000014022.15	3929	8	22168	4	17659	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTTTTTAATGTGTTAT	NA	False	NA	3	True	AATAAA	-13	NA	26631563	26633895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_26631600_26633900
ENSMUSG00000013878.19_4	chr8	+	3811	8	FSM	ENSMUSG00000013878.19	ENSMUST00000209707.2	1000	8	85	-2896	-3	-8	multi-exon	FALSE	canonical	3	12	junction_1	23.7469654344916	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAAAAGTTTTTAATGTG	NA	False	NA	-1	True	AATAAA	-9	NA	26609500	26633891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26609629_26610472_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
ENSMUSG00000013921.16_0	chr7	+	3342	14	NIC	ENSMUSG00000013921.16	novel	3300	14	NA	NA	-36	-6	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	3.75113395084203	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCCTTCTTGTGTCAGGT	7134	False	NA	5	True	AATAAA	-10	NA	29991116	30007786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29991268_29991579_29991792_29996272_29996413_29996497_29996592_29996779_29996942_29997344_29997464_29998236_29998474_30001270_30001407_30001560_30001690_30002794_30002939_30003032_30003157_30003336_30003402_30005183_30005257_30006230
ENSMUSG00000013921.16_1	chr7	+	2072	14	NIC	ENSMUSG00000013921.16	novel	3300	14	NA	NA	-6	-160	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.87221936881638	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCCAAGGGATGCTGACC	7164	False	NA	NA	False	AATAAA	-12	NA	29991146	30006569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29991268_29991602_29991792_29996272_29996413_29996497_29996592_29996779_29996942_29997344_29997464_29998236_29998474_30001270_30001407_30001560_30001690_30002794_30002939_30003032_30003157_30003336_30003402_30005183_30005257_30006230
ENSMUSG00000013936.13_0	chr5	+	819	7	FSM	ENSMUSG00000013936.13	ENSMUST00000014080.13	662	7	-158	1	-158	-1	multi-exon	FALSE	canonical	3	15	junction_3	1.91485421551268	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGTGACCATTGGCTCA	3447	False	NA	NA	False	AATAAA	-20	NA	122238855	122244916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122239093_122239811_122239902_122240758_122240835_122241893_122241999_122242889_122242969_122243050_122243100_122244733
ENSMUSG00000013973.13_3	chr1	+	1600	5	FSM	ENSMUSG00000013973.13	ENSMUST00000064950.11	1618	5	18	0	18	0	multi-exon	FALSE	canonical	3	102	junction_1	61.0184398358398	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1473	False	NA	18	True	NA	NA	NA	171156993	171169250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171157095_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUSG00000013973.13_4	chr1	+	1627	6	FSM	ENSMUSG00000013973.13	ENSMUST00000111300.8	2563	6	287	649	24	0	multi-exon	FALSE	canonical	3	76	junction_1	69.9674209900579	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1479	False	NA	18	True	NA	NA	NA	171156999	171169250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171157095_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUSG00000013973.13_8	chr1	+	1619	6	NIC	ENSMUSG00000013973.13	novel	849	5	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	78.1756995491566	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1653	False	NA	18	True	NA	NA	NA	171157173	171169250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUSG00000013973.13_9	chr1	+	1576	5	FSM	ENSMUSG00000013973.13	ENSMUST00000129116.8	849	5	6	-733	6	0	multi-exon	FALSE	canonical	3	47	junction_1	84.8038177206663	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1663	False	NA	18	True	NA	NA	NA	171157183	171169250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171157261_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUSG00000013997.11_0	chr1	-	1314	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111295.8	1335	7	9	12	4	-12	multi-exon	TRUE	canonical	3	74	junction_6	27.0025718939676	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAATAATCATAATGTCT	888	False	NA	-22	True	NA	NA	NA	171173204	171169823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173135
ENSMUSG00000013997.11_1	chr1	-	1677	7	NIC	ENSMUSG00000013997.11	novel	3041	7	NA	NA	7	-8	intron_retention	FALSE	canonical	3	10	junction_6	48.6646689087679	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATCATAATGTCTGGAC	906	False	NA	-18	True	NA	NA	NA	171173186	171169819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171172758
ENSMUSG00000013997.11_2	chr1	-	1341	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111289.8	3041	7	24	1676	3	-3	multi-exon	FALSE	canonical	3	17	junction_6	46.1904270986484	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATGTCTGGACATGTC	902	False	NA	-13	True	AATATA	-5	NA	171173190	171169814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173103
ENSMUSG00000013997.11_3	chr1	-	1883	6	ISM	ENSMUSG00000013997.11	ENSMUST00000111295.8	1335	7	24	-5	4	5	intron_retention	FALSE	canonical	3	103	junction_4	16.4608626748418	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGACATGTCTTTTGGGG	903	False	NA	-5	True	AATATA	-13	NA	171173189	171169806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481
ENSMUSG00000013997.11_5	chr1	-	1991	5	FSM	ENSMUSG00000013997.11	ENSMUST00000141357.2	2932	5	18	923	3	-8	multi-exon	FALSE	canonical	3	137	junction_3	5.87367006223537	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATCATAATGTCTGGAC	902	False	NA	-18	True	NA	NA	NA	171173190	171169819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171172108_171172481
ENSMUSG00000014039.19_0	chr16	-	6154	24	NIC	ENSMUSG00000014039.19	novel	6194	24	NA	NA	25	-4	combination_of_known_junctions	FALSE	canonical	3	10	junction_15	8.7757183474732	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATTGCTGGCCCTCTGCT	6508	False	NA	-4	True	AATAAA	-21	NA	97653025	97592723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618063_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652968
ENSMUSG00000014039.19_12	chr16	-	4515	12	ISM	ENSMUSG00000014039.19	ENSMUST00000095849.10	6346	24	40105	55	-7677	-2	3prime_fragment	FALSE	canonical	3	28	junction_11	6.67918934062614	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGCTGGCCCTCTGCTCT	NA	False	NA	-2	True	AATAAA	-23	NA	97612322	97592721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256
ENSMUSG00000014039.19_14	chr16	-	5804	24	NIC	ENSMUSG00000014039.19	novel	6194	24	NA	NA	-31	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_15	8.90996765591714	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTTGTGAATGGTAATG	6519	False	NA	NA	False	AATAAA	-18	NA	97653014	97593077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618048_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652968
ENSMUSG00000014039.19_15	chr16	-	6083	24	NNC	ENSMUSG00000014039.19	novel	6194	24	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_15	8.90996765591714	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGCTGGCCCTCTGCTCT	6494	False	NA	-2	True	AATAAA	-23	NA	97653039	97592721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618150_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652968
ENSMUSG00000014039.19_2	chr16	-	6160	24	FSM	ENSMUSG00000014039.19	ENSMUST00000121584.8	6194	24	30	4	30	-4	multi-exon	FALSE	canonical	0	0	junction_23	11.3557360404684	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATTGCTGGCCCTCTGCT	6513	False	NA	-4	True	AATAAA	-21	NA	97653020	97592723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618048_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652972
ENSMUSG00000014039.19_28	chr16	-	5456	24	NIC	ENSMUSG00000014039.19	novel	6346	24	NA	NA	4	-6	combination_of_known_junctions	FALSE	canonical	2	5	junction_23	10.5890766558487	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCACATTTTTTATTTTT	7110	False	NA	NA	False	AATAAA	-9	NA	97652423	97593537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618063_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652250
ENSMUSG00000014039.19_4	chr16	-	2474	2	ISM	ENSMUSG00000014039.19	ENSMUST00000131951.8	3541	5	4505	-1	2122	1	3prime_fragment	FALSE	canonical	3	54	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTATTTTTTAAAGAT	NA	False	NA	NA	False	AATAAA	-16	NA	97596997	97593530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_97595857_97596849
ENSMUSG00000014039.19_5	chr16	-	2259	1	ISM	ENSMUSG00000014039.19	ENSMUST00000095849.10	6346	24	57447	55	4139	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGCTGGCCCTCTGCTCT	NA	False	NA	-2	True	AATAAA	-23	NA	97594980	97592721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_97592700_97595000
ENSMUSG00000014039.19_7	chr16	-	5336	24	NIC	ENSMUSG00000014039.19	novel	6194	24	NA	NA	30	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_23	11.2545726896769	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTTTTATTTTTTAAAG	6513	False	NA	NA	False	AATAAA	-14	NA	97653020	97593532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618063_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652972
ENSMUSG00000014074.18_0	chr16	+	3883	6	FSM	ENSMUSG00000014074.18	ENSMUST00000014218.15	3932	6	43	6	43	-6	multi-exon	TRUE	canonical	3	5	junction_5	6.9108610172684	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCAGTGTTTGGCTTTTT	NA	False	NA	7	True	AATAAA	-8	NA	32096321	32119718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936_32108059_32110720_32110800_32117205
ENSMUSG00000014074.18_2	chr16	+	190	1	ISM	ENSMUSG00000014074.18	ENSMUST00000014218.15	3932	6	22313	943	22313	-943	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAACAGGTAAGTATC	3919	False	NA	NA	False	NA	NA	NA	32118591	32118781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32118600_32118800
ENSMUSG00000014074.18_3	chr16	+	453	1	ISM	ENSMUSG00000014074.18	ENSMUST00000014218.15	3932	6	22992	1	22992	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTGGCTTTTTCCACA	4598	False	NA	12	True	AATAAA	-13	NA	32119270	32119723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32119300_32119700
ENSMUSG00000014075.16_0	chr16	+	603	5	FSM	ENSMUSG00000014075.16	ENSMUST00000014220.15	838	5	38	197	-6	-193	multi-exon	FALSE	canonical	3	248	junction_3	20.9568008054665	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTTGTATATGTTTAAA	NA	False	NA	21	True	AATAAA	-32	NA	32238557	32247720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32238746_32241637_32241772_32244058_32244129_32245675_32245740_32247573
ENSMUSG00000014075.16_1	chr16	+	890	6	NNC	ENSMUSG00000014075.16	novel	838	5	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	122.726688214096	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGTCATGAATAGTTTT	NA	False	NA	5	True	AATAAA	-17	NA	32238551	32247913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_32238746_32241637_32241772_32244058_32244129_32244971_32245060_32245675_32245740_32247573
ENSMUSG00000014075.16_14	chr16	+	2624	2	ISM	ENSMUSG00000014075.16	ENSMUST00000131204.2	2158	3	4642	205	4642	-201	3prime_fragment	FALSE	canonical	3	258	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCTGTTAAGTTGTATA	NA	False	NA	13	True	AATAAA	-24	NA	32243254	32247712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32245740_32247573
ENSMUSG00000014075.16_15	chr16	+	5952	3	NIC	ENSMUSG00000014075.16	novel	838	5	NA	NA	7	-10	intron_retention	FALSE	canonical	3	248	junction_1	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCACCCCTTATGTCAT	NA	False	NA	-5	True	AATAAA	-7	NA	32238570	32247903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_32244129_32245675_32245740_32247573
ENSMUSG00000014075.16_2	chr16	+	2339	4	NIC	ENSMUSG00000014075.16	novel	838	5	NA	NA	-1	1	intron_retention	FALSE	canonical	3	251	junction_2	21.6384431561566	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTCATGAATAGTTTTT	NA	False	NA	6	True	AATAAA	-18	NA	32238562	32247914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_32238746_32241637_32241772_32244058_32245740_32247573
ENSMUSG00000014075.16_5	chr16	+	730	4	FSM	ENSMUSG00000014075.16	ENSMUST00000080316.8	720	4	-7	-3	-7	-1	multi-exon	FALSE	canonical	3	12	junction_2	127.027556065603	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCATGAATAGTTTTTAT	NA	False	NA	8	True	AATAAA	-20	NA	32238556	32247916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32238746_32241637_32241772_32245675_32245740_32247573
ENSMUSG00000014077.14_0	chr2	+	2564	7	FSM	ENSMUSG00000014077.14	ENSMUST00000014221.13	2609	7	33	12	9	0	multi-exon	FALSE	canonical	3	147	junction_2	25.1197133741609	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAAAAGAACTTGGTTG	NA	False	NA	NA	False	AATAAA	-13	NA	119378210	119417496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119378399_119391211_119391285_119397130_119397212_119402248_119402377_119411175_119411238_119415010_119415134_119415587
ENSMUSG00000014077.14_13	chr2	+	1537	1	ISM	ENSMUSG00000014077.14	ENSMUST00000014221.13	2609	7	37782	12	18874	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAAAAGAACTTGGTTG	NA	False	NA	NA	False	AATAAA	-13	NA	119415959	119417496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119416000_119417500
ENSMUSG00000014158.13_0	chr5	-	3198	16	FSM	ENSMUSG00000014158.13	ENSMUST00000071968.9	3228	16	26	4	23	1	multi-exon	FALSE	canonical	2	11	junction_12	3.23865541373096	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACAGTGAGGGTGAGGTT	NA	False	NA	NA	False	AATAAA	-16	NA	114796456	114760216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114760872_114761668_114761791_114763071_114763200_114764804_114765122_114766653_114766721_114766868_114767035_114768010_114768085_114768482_114768576_114768804_114768964_114771195_114771376_114772576_114772876_114773507_114773649_114774370_114774524_114778184_114778358_114782574_114782992_114796402
ENSMUSG00000014158.13_1	chr5	-	3194	16	FSM	ENSMUSG00000014158.13	ENSMUST00000112225.8	3226	16	31	1	31	-1	multi-exon	FALSE	canonical	2	11	junction_12	3.46153466286591	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAGTGAGGGTGAGGTTG	NA	False	NA	NA	False	AATAAA	-17	NA	114796448	114760215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114760872_114761668_114761791_114763071_114763200_114764804_114765122_114766653_114766721_114766868_114767035_114768010_114768085_114768482_114768576_114768804_114768964_114771195_114771376_114772576_114772876_114773507_114773649_114774370_114774524_114778184_114778358_114782574_114782995_114796402
ENSMUSG00000014158.13_11	chr5	-	2927	15	ISM	ENSMUSG00000014158.13	ENSMUST00000112225.8	3226	16	13703	4	184	-1	3prime_fragment	FALSE	canonical	2	11	junction_12	3.32046837119127	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACACAGTGAGGGTGAGG	NA	False	NA	NA	False	AATAAA	-14	NA	114782776	114760218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_114760872_114761668_114761791_114763071_114763200_114764804_114765122_114766653_114766721_114766868_114767035_114768010_114768085_114768482_114768576_114768804_114768964_114771195_114771376_114772576_114772876_114773507_114773649_114774370_114774524_114778184_114778358_114782574
ENSMUSG00000014158.13_13	chr5	-	2527	13	ISM	ENSMUSG00000014158.13	ENSMUST00000071968.9	3228	16	59	4325	56	267	5prime_fragment	FALSE	canonical	2	11	junction_9	2.91547594742265	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATATAGGGCGGTGGTGG	NA	False	NA	NA	False	ATTAAA	-9	NA	114796423	114764537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_114765122_114766653_114766721_114766868_114767035_114768010_114768085_114768482_114768576_114768804_114768964_114771195_114771376_114772576_114772876_114773507_114773649_114774370_114774524_114778184_114778358_114782574_114782992_114796402
ENSMUSG00000014158.13_7	chr5	-	3052	15	NIC	ENSMUSG00000014158.13	novel	3228	16	NA	NA	10	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	5.16117768557146	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACAGTGAGGGTGAGGTT	NA	False	NA	NA	False	AATAAA	-16	NA	114796469	114760216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_114760872_114761668_114761791_114763071_114763200_114764804_114765122_114766653_114766721_114766868_114767035_114768010_114768085_114768482_114768576_114771195_114771376_114772576_114772876_114773507_114773649_114774370_114774524_114778184_114778358_114782574_114782992_114796402
ENSMUSG00000014164.16_0	chr13	-	2056	2	ISM	ENSMUSG00000014164.16	ENSMUST00000091583.6	6871	17	93025	3048	93025	-3048	3prime_fragment	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAATTGTTTGTATTGGA	NA	False	NA	NA	False	ACTAAA	-14	NA	58157217	58151089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_58153019_58157090
ENSMUSG00000014177.11_0	chr11	+	1717	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	60	7	25	-7	multi-exon	FALSE	canonical	3	376	junction_1	45.7666181111663	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGCATTAGATGTGTGG	9301	False	NA	3	True	TATAAA	-11	NA	62770340	62786004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
ENSMUSG00000014177.11_5	chr11	+	1783	7	NIC	ENSMUSG00000014177.11	novel	1784	7	NA	NA	-44	-7	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	171.994831963702	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGCATTAGATGTGTGG	9356	False	NA	3	True	TATAAA	-11	NA	62770395	62786004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_62770543_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
ENSMUSG00000014195.17_1	chr11	-	1763	14	FSM	ENSMUSG00000014195.17	ENSMUST00000014339.15	2330	14	550	17	2	4	multi-exon	FALSE	canonical	3	2240	junction_1	249.671049855795	2815	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGTTTTGACCGTTCTT	5932	False	NA	32	True	ATTAAA	-14	NA	100510444	100473660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUSG00000014226.11_0	chr1	-	1478	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	58	562	-12	-562	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	2970	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAAAAGATGAGTTCTGC	7354	False	NA	-13	True	AATAAA	-12	NA	160040387	160030498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
ENSMUSG00000014232.15_20	chr16	+	3402	2	ISM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	25764	4	25483	-4	3prime_fragment	FALSE	canonical	3	158	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGTCTTGGCTGCTATTA	4702	False	NA	3	True	AATACA	-13	NA	3752452	3759007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_3755479_3758631
ENSMUSG00000014232.15_5	chr16	+	1588	12	FSM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	185	6	-29	-6	multi-exon	FALSE	canonical	3	109	junction_6	16.217019933921	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAAGTCTTGGCTGCTAT	3279	False	NA	1	True	AATACA	-11	NA	3726873	3759005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
ENSMUSG00000014243.6_1	chr11	-	597	3	NIC	ENSMUSG00000014243.6	novel	732	5	NA	NA	8	-2	combination_of_known_splicesites	FALSE	canonical	3	97	junction_2	132	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAGATCAAGTTATTGAA	NA	False	NA	-17	True	AATAAA	-23	NA	62172193	62158051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_62158433_62159529_62159635_62172082
ENSMUSG00000014243.6_3	chr11	-	722	5	FSM	ENSMUSG00000014243.6	ENSMUST00000072916.5	732	5	8	2	8	-2	multi-exon	TRUE	canonical	3	218	junction_4	57.8986182909402	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAGATCAAGTTATTGAA	NA	False	NA	-17	True	AATAAA	-23	NA	62172193	62158051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_62158433_62159529_62159635_62164537_62164641_62167443_62167466_62172082
ENSMUSG00000014243.6_9	chr11	-	694	4	NIC	ENSMUSG00000014243.6	novel	732	5	NA	NA	8	-8	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	149.035417118065	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGCAATCAGATCAAGTT	NA	False	NA	-23	True	AATAAA	-17	NA	62172193	62158057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_62158433_62159529_62159635_62164537_62164641_62172082
ENSMUSG00000014245.9_4	chr11	+	1655	7	FSM	ENSMUSG00000014245.9	ENSMUST00000014389.6	2174	7	0	519	0	-519	multi-exon	TRUE	canonical	3	156	junction_1	58.9736287580211	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTAGGAGCTGGGCCCAC	NA	False	NA	19	True	AATAAA	-23	NA	62349285	62404724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729
ENSMUSG00000014245.9_50	chr11	+	3115	3	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53154	1615	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	158	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTATAATGATTTGAGAAT	NA	False	NA	7	True	ATTAAA	-15	NA	62402587	62406858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_62403098_62403729_62405978_62406501
ENSMUSG00000014245.9_55	chr11	+	2844	4	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53094	1612	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	132.705187037533	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACTATAATGATTTGAG	NA	False	NA	4	True	ATTAAA	-12	NA	62402527	62406855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_62402636_62402963_62403098_62403729_62405978_62406501
ENSMUSG00000014245.9_59	chr11	+	1557	2	ISM	ENSMUSG00000014245.9	ENSMUST00000014389.6	2174	7	53250	519	53102	-519	3prime_fragment	FALSE	canonical	3	316	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTAGGAGCTGGGCCCAC	NA	False	NA	19	True	AATAAA	-23	NA	62402535	62404724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_62403098_62403729
ENSMUSG00000014294.5_0	chr18	-	420	3	FSM	ENSMUSG00000014294.5	ENSMUST00000014438.5	572	3	23	129	23	-129	multi-exon	FALSE	canonical	3	2929	junction_2	68.5	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTTCAGAATGTCCTCTT	NA	False	NA	-21	True	TATAAA	-18	NA	36877587	36875513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_36875712_36877233_36877341_36877472
ENSMUSG00000014294.5_2	chr18	-	308	2	ISM	ENSMUSG00000014294.5	ENSMUST00000014438.5	572	3	267	129	267	-129	3prime_fragment	FALSE	canonical	3	3066	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTTCAGAATGTCCTCTT	NA	False	NA	-21	True	TATAAA	-18	NA	36877343	36875513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_36875712_36877233
ENSMUSG00000014301.14_0	chr16	-	536	5	FSM	ENSMUSG00000014301.14	ENSMUST00000014445.7	596	5	53	7	1	-7	multi-exon	FALSE	canonical	3	1132	junction_4	70.3491293478462	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCATATGTTCCTGTTTG	NA	False	NA	-22	True	AATAAA	-21	NA	4442799	4434334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
ENSMUSG00000014301.14_3	chr16	-	459	4	NIC	ENSMUSG00000014301.14	novel	596	5	NA	NA	-7	-7	combination_of_known_splicesites	FALSE	canonical	3	48	junction_3	586.024648704207	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCATATGTTCCTGTTTG	NA	False	NA	-22	True	AATAAA	-21	NA	4442807	4434334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_4434498_4434676_4434743_4434989_4435127_4442714
ENSMUSG00000014303.14_0	chr16	+	3588	7	FSM	ENSMUSG00000014303.14	ENSMUST00000014447.13	3619	7	11	20	11	-5	multi-exon	FALSE	canonical	3	65	junction_1	16.3978318349985	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATGGTTTCTGCACGTG	NA	False	NA	16	True	AATAAA	-10	NA	4412587	4433801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4412800_4426461_4426683_4428121_4428295_4429143_4429321_4429396_4429531_4429614_4429734_4431249
ENSMUSG00000014303.14_15	chr16	+	3115	5	ISM	ENSMUSG00000014303.14	ENSMUST00000014447.13	3619	7	15585	20	-1112	-5	3prime_fragment	FALSE	canonical	3	99	junction_3	6.37867541108654	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATGGTTTCTGCACGTG	NA	False	NA	16	True	AATAAA	-10	NA	4428161	4433801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_4428295_4429143_4429321_4429396_4429531_4429614_4429734_4431249
ENSMUSG00000014303.14_18	chr16	+	2137	1	ISM	ENSMUSG00000014303.14	ENSMUST00000014447.13	3619	7	19088	20	2173	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATGGTTTCTGCACGTG	NA	False	NA	16	True	AATAAA	-10	NA	4431664	4433801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_4431700_4433800
ENSMUSG00000014303.14_3	chr16	+	1822	8	NIC	ENSMUSG00000014303.14	novel	3619	7	NA	NA	-2	220	combination_of_known_junctions	FALSE	canonical	1	2	junction_7	45.2088125777915	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGATGTTAAAATCGCTAG	NA	False	NA	NA	False	AATAAA	-17	NA	4412574	4443008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_4412800_4426461_4426683_4428121_4428295_4429143_4429321_4429396_4429531_4429614_4429734_4439472_4439571_4442333
ENSMUSG00000014313.16_0	chr15	-	418	4	FSM	ENSMUSG00000014313.16	ENSMUST00000014457.15	503	4	80	5	41	-1	multi-exon	FALSE	canonical	3	8539	junction_3	472.446822404384	1400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAGTCTTTGCTTGGTTA	NA	False	NA	-6	True	AATAAA	-17	NA	35938312	35932126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_35932244_35935430_35935560_35937300_35937431_35938270
ENSMUSG00000014313.16_1	chr15	-	378	3	FSM	ENSMUSG00000014313.16	ENSMUST00000153512.2	738	3	359	1	-117	-1	multi-exon	FALSE	canonical	3	8821	junction_1	415.5	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAGTCTTTGCTTGGTTA	762	False	NA	-6	True	AATAAA	-17	NA	35937432	35932126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_35932244_35935430_35935560_35937300
ENSMUSG00000014313.16_8	chr15	-	2960	2	FSM	ENSMUSG00000014313.16	ENSMUST00000127999.2	3038	2	78	0	78	0	multi-exon	FALSE	canonical	3	8821	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTAAGTCTTTGCTTGGT	NA	False	NA	-8	True	AATAAA	-15	NA	35938275	35932128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_35932244_35935430
ENSMUSG00000014329.15_0	chr10	-	3278	21	FSM	ENSMUSG00000014329.15	ENSMUST00000143791.8	5431	21	-117	2270	-117	0	multi-exon	FALSE	canonical	1	4	junction_1	4.36205226928793	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70995647	70760931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_70761209_70766420_70766521_70767914_70768076_70771661_70771819_70776315_70776471_70776829_70776870_70779199_70779366_70781054_70781212_70782374_70782508_70782634_70782832_70783601_70783764_70785768_70785956_70789224_70789357_70791953_70792206_70792851_70793047_70793490_70793545_70794603_70794763_70796964_70797045_70863727_70863798_70915019_70915067_70995250
ENSMUSG00000014329.15_1	chr10	-	3377	22	FSM	ENSMUSG00000014329.15	ENSMUST00000014473.6	3231	22	-146	0	-136	0	multi-exon	FALSE	canonical	1	1	junction_2	4.79370335301786	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70995666	70760931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_70761209_70763544_70763625_70766420_70766521_70767914_70768076_70771661_70771819_70776315_70776471_70776829_70776870_70779199_70779366_70781054_70781212_70782374_70782508_70782634_70782832_70783601_70783764_70785768_70785956_70789224_70789357_70791953_70792206_70792851_70793047_70793490_70793545_70794603_70794763_70796964_70797045_70863727_70863798_70915019_70915067_70995250
ENSMUSG00000014329.15_6	chr10	-	2201	9	ISM	ENSMUSG00000014329.15	ENSMUST00000014473.6	3231	22	-152	27503	-142	-18103	5prime_fragment	FALSE	canonical	2	6	junction_4	4.63006479436303	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTCTCAGCCGCCTTAG	NA	False	NA	NA	False	AATAAA	-15	NA	70995672	70788434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_70789357_70791953_70792206_70792851_70793047_70793490_70793545_70794603_70794763_70796964_70797045_70863727_70863798_70915019_70915067_70995250
ENSMUSG00000014349.8_0	chr11	-	2894	7	FSM	ENSMUSG00000014349.8	ENSMUST00000100528.5	3997	7	38	1065	38	-1065	multi-exon	FALSE	canonical	3	1035	junction_3	37.418429802557	2151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGAGGAAGCGCCTGTG	5505	False	NA	-9	True	AATAAA	-13	NA	95956176	95939322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95941241_95942559_95942651_95946663_95946777_95949141_95949254_95951762_95951951_95953820_95953894_95955777
ENSMUSG00000014349.8_2	chr11	-	1198	1	ISM	ENSMUSG00000014349.8	ENSMUST00000100528.5	3997	7	15694	1065	15694	-1065	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGAGGAAGCGCCTGTG	NA	False	NA	-9	True	AATAAA	-13	NA	95940520	95939322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_95939300_95940500
ENSMUSG00000014353.16_1	chr2	+	4606	19	FSM	ENSMUSG00000014353.16	ENSMUST00000143398.3	2100	19	13	-2519	13	-3	multi-exon	FALSE	canonical	1	36	junction_11	26.3253621315648	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGATTGTTTCCTGGGATT	NA	False	NA	6	True	AATAAA	-17	NA	128660235	128696178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_128660424_128665002_128665064_128666335_128666431_128668176_128668309_128670325_128670377_128672429_128672521_128673117_128673180_128673369_128673554_128676034_128676135_128679221_128679316_128682651_128682724_128683154_128683264_128683344_128683404_128684515_128684620_128687380_128687455_128688648_128688720_128690924_128690978_128692223_128692255_128693203
ENSMUSG00000014353.16_41	chr2	+	1483	1	ISM	ENSMUSG00000014353.16	ENSMUST00000110325.8	4807	19	34660	1	2818	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTTTCCTGGGATTAT	NA	False	NA	8	True	AATAAA	-19	NA	128694697	128696180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_128694700_128696200
ENSMUSG00000014355.11_5	chr2	-	6329	48	FSM	ENSMUSG00000014355.11	ENSMUST00000014499.10	8942	48	9	2604	-6	-2604	multi-exon	FALSE	canonical	3	297	junction_42	39.2671319365267	512	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTATTGATTGCTTTGG	NA	False	NA	-6	True	AATAAA	-19	NA	128529302	128454627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_128454984_128457289_128457425_128459473_128459673_128461173_128461270_128461813_128461901_128464292_128464432_128465415_128465484_128465797_128465876_128466777_128466896_128469040_128469128_128470416_128470611_128471436_128471491_128471599_128471691_128472147_128472225_128474517_128474593_128475256_128475336_128476352_128476436_128476557_128476693_128479027_128479120_128483261_128483497_128484365_128484638_128487053_128487173_128490224_128490440_128492115_128492295_128494615_128494687_128494771_128494809_128495086_128495166_128499045_128499195_128500167_128500260_128501656_128501926_128502724_128502800_128505794_128505983_128507367_128507429_128508484_128508626_128510844_128510980_128511569_128511636_128511742_128511834_128513981_128514078_128516470_128516681_128517590_128517812_128518021_128518168_128520130_128520205_128521439_128521523_128522028_128522130_128522313_128522366_128526421_128526584_128527743_128527981_128529072
ENSMUSG00000014361.6_1	chr2	+	2163	8	ISM	ENSMUSG00000014361.6	ENSMUST00000014505.5	4302	19	-130	40004	-130	-39788	5prime_fragment	TRUE	canonical	2	5	junction_3	3.20713490294909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGTTGATTTCGGCCACT	NA	False	NA	NA	False	NA	NA	NA	128540745	128604810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_128541024_128571105_128571515_128578482_128578584_128580115_128580290_128592019_128592107_128593826_128593943_128600962_128601147_128603996
ENSMUSG00000014361.6_2	chr2	+	4499	19	FSM	ENSMUSG00000014361.6	ENSMUST00000014505.5	4302	19	-84	-113	-84	113	multi-exon	FALSE	canonical	2	5	junction_3	3.05302925867424	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGGCAGGTTTGCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	128540791	128644927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_128541024_128571105_128571515_128578482_128578584_128580115_128580290_128592019_128592107_128593826_128593943_128600962_128601147_128603996_128604149_128613266_128613421_128618205_128618360_128619332_128619419_128620834_128620931_128621711_128621793_128624442_128624536_128625811_128625931_128632136_128632247_128634865_128635026_128636361_128636499_128643073
ENSMUSG00000014361.6_8	chr2	+	1660	1	Genic_Genomic	ENSMUSG00000014361.6	novel	NA	NA	NA	NA	30031	109	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAATGGCAGGTTTGC	NA	False	NA	NA	False	ATTAAA	-17	NA	128643263	128644923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_128643300_128644900
ENSMUSG00000014402.16_0	chr7	-	1492	10	FSM	ENSMUSG00000014402.16	ENSMUST00000014546.15	1949	10	28	429	3	208	multi-exon	FALSE	canonical	3	992	junction_2	86.0289931030289	834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATTTTTCTCTTTCTTGG	NA	False	NA	-38	True	AATAAA	-10	NA	46569689	46539125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_1	chr7	-	1413	10	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	-2	208	combination_of_known_junctions	FALSE	canonical	3	163	junction_7	331.9070969227	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATTTTTCTCTTTCTTGG	NA	False	NA	-38	True	AATAAA	-10	NA	46569687	46539125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558740_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014418.17_11	chr7	-	758	1	ISM	ENSMUSG00000014418.17	ENSMUST00000142663.8	4735	24	34450	5	7235	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACATGGATATGAGATT	NA	False	NA	-3	True	AATAAA	-21	NA	46410652	46409894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_46409900_46410700
ENSMUSG00000014418.17_4	chr7	-	4610	23	NIC	ENSMUSG00000014418.17	novel	4953	23	NA	NA	-13	-2	combination_of_known_junctions	FALSE	canonical	3	21	junction_22	12.4724489764871	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAGAACATGGATATGAG	NA	False	NA	-6	True	AATAAA	-18	NA	46445140	46409897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427624_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440473_46444851
ENSMUSG00000014418.17_5	chr7	-	4491	23	FSM	ENSMUSG00000014418.17	ENSMUST00000107654.8	4422	23	-77	8	-12	-2	multi-exon	FALSE	canonical	2	7	junction_22	14.2782270816457	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAGAACATGGATATGAG	NA	False	NA	-6	True	AATAAA	-18	NA	46445500	46409897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427624_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440473_46445330
ENSMUSG00000014418.17_6	chr7	-	4629	23	FSM	ENSMUSG00000014418.17	ENSMUST00000014562.14	4953	23	316	8	-8	-2	multi-exon	FALSE	canonical	3	17	junction_22	12.9471270625399	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAGAACATGGATATGAG	NA	False	NA	-6	True	AATAAA	-18	NA	46445135	46409897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427624_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440497_46444851
ENSMUSG00000014418.17_9	chr7	-	4515	23	NIC	ENSMUSG00000014418.17	novel	4953	23	NA	NA	-12	-2	combination_of_known_junctions	FALSE	canonical	1	1	junction_22	15.1583923786176	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAGAACATGGATATGAG	NA	False	NA	-6	True	AATAAA	-18	NA	46445500	46409897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427624_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440497_46445330
ENSMUSG00000014426.10_0	chr17	-	4193	25	ISM	ENSMUSG00000014426.10	ENSMUST00000089058.7	5441	27	47325	9	-5485	-9	3prime_fragment	FALSE	canonical	3	136	junction_19	34.6333974975344	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCGAAGTCAGCGTCTG	NA	False	NA	-8	True	AATAAA	-14	NA	12490358	12446516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12447008_12448403_12448584_12451298_12451406_12451800_12451924_12453937_12454098_12454785_12454903_12455867_12455939_12456925_12457118_12458265_12458347_12458856_12458958_12461536_12461693_12462386_12462484_12466189_12466257_12466939_12467019_12467790_12467925_12468383_12468546_12472968_12473119_12473883_12474151_12475477_12475562_12475648_12475749_12476800_12476918_12479337_12479496_12480130_12480278_12482792_12483036_12489749
ENSMUSG00000014426.10_1	chr17	-	5417	27	FSM	ENSMUSG00000014426.10	ENSMUST00000089058.7	5441	27	15	9	5	-9	multi-exon	FALSE	canonical	2	131	junction_25	36.3765644044325	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCGAAGTCAGCGTCTG	NA	False	NA	-8	True	AATAAA	-14	NA	12537668	12446516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_12447008_12448403_12448584_12451298_12451406_12451800_12451924_12453937_12454098_12454785_12454903_12455867_12455939_12456925_12457118_12458265_12458347_12458856_12458958_12461536_12461693_12462386_12462484_12466189_12466257_12466939_12467019_12467790_12467925_12468383_12468546_12472968_12473119_12473883_12474151_12475477_12475562_12475648_12475749_12476800_12476918_12479337_12479496_12480130_12480278_12482792_12483036_12489749_12491108_12496807_12496999_12537384
ENSMUSG00000014426.10_24	chr17	-	3915	24	ISM	ENSMUSG00000014426.10	ENSMUST00000233755.2	5237	26	47397	11	-5365	-11	3prime_fragment	FALSE	canonical	3	41	junction_10	48.0548678217	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAAGCGAAGTCAGCGTC	NA	False	NA	-10	True	AATAAA	-12	NA	12490238	12446518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12447008_12448403_12448584_12451298_12451406_12451800_12451924_12453937_12454098_12454785_12454903_12455867_12455939_12456925_12457118_12458265_12458347_12458856_12458958_12462386_12462484_12466189_12466257_12466939_12467019_12467790_12467925_12468383_12468546_12472968_12473119_12473883_12474151_12475477_12475562_12475648_12475749_12476800_12476918_12479337_12479496_12480130_12480278_12482792_12483036_12489749
ENSMUSG00000014426.10_5	chr17	-	5259	26	FSM	ENSMUSG00000014426.10	ENSMUST00000233755.2	5237	26	-32	10	6	-10	multi-exon	FALSE	canonical	2	41	junction_10	48.1782357501808	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGCGAAGTCAGCGTCT	NA	False	NA	-9	True	AATAAA	-13	NA	12537667	12446517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_12447008_12448403_12448584_12451298_12451406_12451800_12451924_12453937_12454098_12454785_12454903_12455867_12455939_12456925_12457118_12458265_12458347_12458856_12458958_12462386_12462484_12466189_12466257_12466939_12467019_12467790_12467925_12468383_12468546_12472968_12473119_12473883_12474151_12475477_12475562_12475648_12475749_12476800_12476918_12479337_12479496_12480130_12480278_12482792_12483036_12489749_12491108_12496807_12496999_12537384
ENSMUSG00000014444.18_0	chr8	-	8187	51	FSM	ENSMUSG00000014444.18	ENSMUST00000156333.9	8219	51	7	25	7	-2	multi-exon	FALSE	canonical	3	43	junction_46	25.1307699842245	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAACGGACTGTCACAG	6118	False	NA	-23	True	AGTAAA	-13	NA	123278061	123208461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123208971_123209048_123209266_123209387_123209468_123209607_123209731_123209795_123209969_123210057_123210151_123210224_123210414_123211467_123211616_123211700_123211860_123211995_123212211_123212328_123212477_123212562_123212696_123213045_123213359_123213493_123213683_123213748_123214008_123214213_123214421_123214576_123214684_123214813_123214987_123215072_123215130_123215199_123215294_123215837_123215939_123216293_123216366_123216801_123216903_123216977_123217068_123217593_123217766_123217857_123217955_123218053_123218298_123218397_123218552_123219345_123219451_123221528_123221734_123222155_123222357_123222472_123222599_123223141_123223319_123223478_123223640_123224190_123224304_123224544_123224728_123224889_123225039_123225131_123225311_123225398_123225511_123226366_123226625_123226942_123227044_123227900_123227989_123228068_123228156_123228244_123228417_123228504_123228719_123228860_123229051_123232767_123232907_123233004_123233048_123234361_123234485_123240452_123240549_123277713
ENSMUSG00000014444.18_14	chr8	-	2385	13	ISM	ENSMUSG00000014444.18	ENSMUST00000128383.8	6317	40	13383	-261	-878	0	3prime_fragment	FALSE	canonical	3	102	junction_12	16.8893457540545	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACGGACTGTCACAGAC	NA	False	NA	-21	True	AGTAAA	-15	NA	123213241	123208459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123208971_123209048_123209266_123209387_123209468_123209607_123209731_123209795_123209969_123210057_123210151_123210224_123210414_123211467_123211616_123211700_123211860_123211995_123212211_123212328_123212477_123212562_123212696_123213045
ENSMUSG00000014444.18_26	chr8	-	3533	20	ISM	ENSMUSG00000014444.18	ENSMUST00000128383.8	6317	40	11384	-259	-2877	-2	3prime_fragment	FALSE	canonical	3	84	junction_18	21.5632805772238	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAACGGACTGTCACAG	NA	False	NA	-23	True	AGTAAA	-13	NA	123215240	123208461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123208971_123209048_123209266_123209387_123209468_123209607_123209731_123209795_123209969_123210057_123210151_123210224_123210414_123211467_123211616_123211700_123211860_123211995_123212211_123212328_123212477_123212562_123212696_123213045_123213359_123213493_123213683_123213748_123214008_123214213_123214421_123214576_123214684_123214813_123214987_123215072_123215130_123215199
ENSMUSG00000014444.18_40	chr8	-	4324	27	ISM	ENSMUSG00000014444.18	ENSMUST00000067252.14	8216	51	59910	25	-5795	-2	3prime_fragment	FALSE	canonical	3	75	junction_20	22.2553763200699	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAACGGACTGTCACAG	NA	False	NA	-23	True	AGTAAA	-13	NA	123218158	123208461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123208971_123209048_123209266_123209387_123209468_123209607_123209731_123209795_123209969_123210057_123210151_123210224_123210414_123211467_123211616_123211700_123211860_123211995_123212211_123212328_123212477_123212562_123212696_123213045_123213359_123213493_123213683_123213748_123214008_123214213_123214421_123214576_123214684_123214813_123214987_123215072_123215130_123215199_123215294_123215837_123215939_123216293_123216366_123216801_123216903_123216977_123217068_123217593_123217766_123217857_123217955_123218053
ENSMUSG00000014444.18_51	chr8	-	1369	7	ISM	ENSMUSG00000014444.18	ENSMUST00000128383.8	6317	40	16230	-263	214	2	3prime_fragment	FALSE	canonical	3	120	junction_4	11.1168040971015	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGGACTGTCACAGACCA	2390	False	NA	-19	True	AGTAAA	-17	NA	123210394	123208457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123208971_123209048_123209266_123209387_123209468_123209607_123209731_123209795_123209969_123210057_123210151_123210224
ENSMUSG00000014470.5_0	chr8	-	1785	6	FSM	ENSMUSG00000014470.5	ENSMUST00000014614.4	1783	6	-6	4	-6	-4	multi-exon	FALSE	canonical	3	110	junction_3	7.81280999384984	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACGCGAGCCTTGGTCC	9975	False	NA	-9	True	AATAAA	-13	NA	123202809	123192889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123193974_123194700_123194809_123194978_123195094_123195352_123195466_123196938_123197096_123202601
ENSMUSG00000014470.5_1	chr8	-	1606	5	NIC	ENSMUSG00000014470.5	novel	1783	6	NA	NA	20	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_4	53.194807077383	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCGAGCCTTGGTCCTGGG	10001	False	NA	-5	True	AATAAA	-17	NA	123202783	123192885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_123193974_123194700_123194809_123194978_123195094_123195352_123195466_123202601
ENSMUSG00000014470.5_3	chr8	-	5314	5	ISM	ENSMUSG00000014470.5	ENSMUST00000014614.4	1783	6	1974	1	1598	-1	3prime_fragment	FALSE	canonical	3	110	junction_3	7.36545993132812	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGCGAGCCTTGGTCCTGG	NA	False	NA	-6	True	AATAAA	-16	NA	123200829	123192886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123193974_123194700_123194809_123194978_123195094_123195352_123195466_123196938
ENSMUSG00000014470.5_5	chr8	-	1956	6	NIC	ENSMUSG00000014470.5	novel	1783	6	NA	NA	43	-2	combination_of_known_junctions	FALSE	canonical	2	2	junction_5	48.2518393431794	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGCGAGCCTTGGTCCTG	10000	False	NA	-7	True	AATAAA	-15	NA	123202760	123192887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_123193974_123194700_123194809_123194978_123195094_123195352_123195466_123196938_123197096_123202383
ENSMUSG00000014496.9_1	chr14	-	5479	28	FSM	ENSMUSG00000014496.9	ENSMUST00000014640.9	6712	28	-17	1250	-17	-1250	multi-exon	FALSE	canonical	3	136	junction_10	15.4869740389594	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAATGTATTTGTATCTG	5263	False	NA	NA	False	AATAAA	-25	NA	31552625	31421974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31424264_31427221_31427314_31428746_31428830_31429160_31429244_31429959_31430106_31430706_31430791_31430874_31430963_31432708_31432929_31433015_31433134_31433885_31433974_31437190_31437393_31441297_31441373_31442062_31442090_31443802_31443915_31449591_31449733_31451841_31451911_31453985_31454050_31455640_31455724_31456928_31457044_31458716_31458796_31465179_31465393_31467177_31467321_31468869_31468958_31470599_31470801_31477689_31477761_31486210_31486290_31500878_31500963_31552283
ENSMUSG00000014496.9_4	chr14	-	2746	1	ISM	ENSMUSG00000014496.9	ENSMUST00000227863.2	6616	28	78869	11	6179	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGTAAAAAATCAAGTGTC	NA	False	NA	NA	False	AATAAA	-8	NA	31423481	31420735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_31420700_31423500
ENSMUSG00000014498.10_0	chr10	+	6633	28	FSM	ENSMUSG00000014498.10	ENSMUST00000014642.10	6620	28	-29	16	-25	-16	multi-exon	FALSE	canonical	1	1	junction_27	3.16617929972778	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACCAAAGGAAAACTCAACA	NA	False	NA	NA	False	NA	NA	NA	128212958	128229859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128213119_128213437_128213522_128213956_128214036_128214221_128214293_128215249_128215451_128216449_128216538_128216796_128216940_128217714_128217928_128218203_128218283_128218500_128218616_128218769_128218853_128218928_128219047_128219223_128219293_128219437_128219579_128219660_128219742_128221969_128222082_128222277_128222350_128222827_128223030_128223238_128223327_128223455_128223574_128224407_128224628_128224769_128224858_128224955_128225040_128225116_128225263_128225349_128225433_128225638_128225722_128225901_128225994_128226339
ENSMUSG00000014504.17_0	chr18	+	804	5	FSM	ENSMUSG00000014504.17	ENSMUST00000072576.10	876	5	20	52	7	-4	multi-exon	FALSE	canonical	3	833	junction_3	511.998291012773	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACACATTTTGTTCATC	NA	False	NA	-48	True	AATAAA	-6	NA	34464217	34469600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509_34467622_34469151
ENSMUSG00000014504.17_12	chr18	+	506	2	ISM	ENSMUSG00000014504.17	ENSMUST00000142010.2	956	6	3342	0	3342	0	3prime_fragment	FALSE	canonical	3	2090	junction_1	0	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTCATCTTTAAG	NA	False	NA	-42	True	AATAAA	-12	NA	34467570	34469606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_34467622_34469151
ENSMUSG00000014547.11_0	chr14	+	6602	12	FSM	ENSMUSG00000014547.11	ENSMUST00000014691.10	6646	12	40	4	4	-4	multi-exon	FALSE	canonical	3	23	junction_9	5.80111132128866	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATCTCAGTTGTATCCTT	NA	False	NA	18	True	AATAAA	-18	NA	63075166	63198954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_63075507_63123258_63123327_63137703_63137778_63162578_63162634_63167676_63167828_63171738_63171852_63181469_63181597_63186091_63186198_63189363_63189466_63190460_63190592_63192309_63192419_63193728
ENSMUSG00000014547.11_4	chr14	+	5320	2	ISM	ENSMUSG00000014547.11	ENSMUST00000014691.10	6646	12	117200	2	117164	-2	3prime_fragment	FALSE	canonical	3	34	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCAGTTGTATCCTTGT	NA	False	NA	20	True	AATAAA	-20	NA	63192326	63198956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_63192419_63193728
ENSMUSG00000014547.11_5	chr14	+	2886	1	ISM	ENSMUSG00000014547.11	ENSMUST00000014691.10	6646	12	120942	4	120906	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATCTCAGTTGTATCCTT	NA	False	NA	18	True	AATAAA	-18	NA	63196068	63198954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_63196100_63199000
ENSMUSG00000014550.15_1	chr6	-	5222	12	FSM	ENSMUSG00000014550.15	ENSMUST00000014694.11	5334	12	66	46	-10	-46	multi-exon	FALSE	canonical	3	92	junction_10	18.3307536376882	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATGTAAGGCTTTTATT	NA	False	NA	-45	True	ATTAAA	-15	NA	92191840	92163738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_92167440_92168229_92168335_92170109_92170213_92170924_92171012_92175164_92175236_92176674_92176917_92178452_92178615_92178712_92178759_92179550_92179652_92184025_92184167_92188568_92188883_92191691
ENSMUSG00000014550.15_2	chr6	-	2846	1	ISM	ENSMUSG00000014550.15	ENSMUST00000014694.11	5334	12	25356	12	4559	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGGCTGGACTTGTGTG	NA	False	NA	-11	True	ATTAAA	-40	NA	92166550	92163704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_92163700_92166600
ENSMUSG00000014550.15_8	chr6	-	5051	12	NIC	ENSMUSG00000014550.15	novel	5334	12	NA	NA	-10	-11	combination_of_known_junctions	FALSE	canonical	1	5	junction_1	36.6012690020713	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGGCTGGACTTGTGTGT	NA	False	NA	-10	True	ATTAAA	-41	NA	92191840	92163703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_92167234_92168229_92168335_92170109_92170213_92170924_92171012_92175164_92175236_92176674_92176917_92178452_92178615_92178712_92178759_92179550_92179652_92184025_92184167_92188568_92188883_92191691
ENSMUSG00000014551.9_2	chr6	-	727	4	FSM	ENSMUSG00000014551.9	ENSMUST00000140438.2	6073	4	33	5313	-29	0	multi-exon	FALSE	canonical	3	811	junction_2	13.9124245031395	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATAGTAAGTGTGGCCT	NA	False	NA	-9	True	AATAAA	-16	NA	92160981	92151818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_92152190_92152689_92152778_92155690_92155798_92160820
ENSMUSG00000014554.14_1	chr6	-	1040	7	FSM	ENSMUSG00000014554.14	ENSMUST00000014698.10	1107	7	65	2	3	0	multi-exon	FALSE	canonical	3	197	junction_5	13.5369863706809	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCAGTTGTTCGTTTATT	NA	False	NA	-5	True	AATAAA	-21	NA	83483886	83457200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
ENSMUSG00000014554.14_18	chr6	-	910	3	ISM	ENSMUSG00000014554.14	ENSMUST00000138941.3	828	7	-83	9660	3	239	5prime_fragment	FALSE	canonical	3	197	junction_1	15	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTAAAAAAAAAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	83483886	83466950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_83467591_83473667_83473781_83483729
ENSMUSG00000014554.14_3	chr6	-	945	6	FSM	ENSMUSG00000014554.14	ENSMUST00000113888.3	1007	6	60	2	-2	0	multi-exon	FALSE	canonical	3	23	junction_1	78.3019795407498	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCAGTTGTTCGTTTATT	NA	False	NA	-5	True	AATAAA	-21	NA	83483891	83457200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83457419_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
ENSMUSG00000014554.14_6	chr6	-	4390	7	NIC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	3	0	intron_retention	TRUE	canonical	3	8	junction_4	93.7077312119384	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCAGTTGTTCGTTTATT	NA	False	NA	-5	True	AATAAA	-21	NA	83483886	83457200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_83457419_83457824_83457925_83458328_83458445_83458759_83458821_83463965_83467591_83473667_83473781_83483729
ENSMUSG00000014554.14_8	chr6	-	926	6	NIC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	77.3356321497406	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCAGTTGTTCGTTTATT	NA	False	NA	-5	True	AATAAA	-21	NA	83483885	83457200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83483729
ENSMUSG00000014592.22_0	chr4	-	5184	12	FSM	ENSMUSG00000014592.22	ENSMUST00000105670.8	4961	12	61	-284	61	-4	multi-exon	FALSE	canonical	2	11	junction_7	4.69217741838689	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCATATTATCTGTGTTTT	NA	False	NA	-7	True	ATTAAA	-15	NA	151192972	151143986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_151147313_151158444_151158520_151159548_151159743_151162320_151162393_151163237_151163485_151164143_151164332_151168133_151168319_151169019_151169336_151170016_151170096_151170470_151170668_151173286_151173439_151192819
ENSMUSG00000014592.22_1	chr4	-	5215	13	NIC	ENSMUSG00000014592.22	novel	4962	14	NA	NA	55	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	8.16624148553054	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTATCTGTGTTTTGCTT	NA	False	NA	-3	True	ATTAAA	-19	NA	151192978	151143982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_151147313_151158444_151158520_151159548_151159743_151161033_151161055_151162320_151162393_151163237_151163485_151164143_151164332_151168133_151168319_151169019_151169336_151170016_151170096_151170470_151170668_151173286_151173439_151192819
ENSMUSG00000014592.22_2	chr4	-	2275	1	ISM	ENSMUSG00000014592.22	ENSMUST00000097774.9	8533	23	800075	2	17992	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTATCTGTGTTTTGCT	8221	False	NA	-4	True	ATTAAA	-18	NA	151146258	151143983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_151144000_151146300
ENSMUSG00000014592.22_23	chr4	-	594	4	FSM	ENSMUSG00000014592.22	ENSMUST00000185034.8	2198	4	-38	1642	-4	14	multi-exon	FALSE	canonical	3	969	junction_2	33.2565782966318	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATTTAAGTTTAATGA	NA	False	NA	-9	True	AATAAA	-24	NA	151946199	151876672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_151876960_151914874_151914994_151920270_151920341_151946081
ENSMUSG00000014592.22_4	chr4	-	5536	12	NIC	ENSMUSG00000014592.22	novel	4961	12	NA	NA	50	-2	combination_of_known_junctions	FALSE	canonical	2	9	junction_7	5.03541179059136	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATATTATCTGTGTTTTGC	NA	False	NA	-5	True	ATTAAA	-17	NA	151192983	151143984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_151147313_151158444_151158520_151159548_151159743_151162320_151162393_151163237_151163485_151164143_151164332_151168133_151168658_151169019_151169336_151170016_151170096_151170470_151170668_151173286_151173439_151192819
ENSMUSG00000014599.11_1	chr3	-	2420	4	ISM	ENSMUSG00000014599.11	ENSMUST00000120654.8	821	6	2606	-1956	2368	-10	3prime_fragment	FALSE	canonical	2	2	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGTGTGAGTCATGGGAA	9407	False	NA	NA	False	AATAAA	-17	NA	107655689	107648373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_107650462_107654041_107654101_107654422_107654476_107655469
ENSMUSG00000014599.11_2	chr3	-	4134	9	FSM	ENSMUSG00000014599.11	ENSMUST00000014743.10	4176	9	26	16	26	-16	multi-exon	FALSE	canonical	0	0	junction_7	1.36358901432946	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGCCACGTGTGAGTCA	6431	False	NA	NA	False	AATAAA	-11	NA	107667759	107648379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107650462_107654041_107654101_107654422_107654476_107655469_107656486_107657626_107657775_107661047_107661219_107662746_107662810_107663932_107664056_107667340
ENSMUSG00000014601.14_0	chr3	-	3212	21	FSM	ENSMUSG00000014601.14	ENSMUST00000064759.7	3215	21	1	2	1	1	multi-exon	FALSE	canonical	3	175	junction_2	23.6893963620857	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTGTTGCCTTGTGTGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	107539009	107519849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107520783_107521910_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525707_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107534703_107534779_107535471_107535542_107538816
ENSMUSG00000014601.14_1	chr3	-	3209	21	NNC	ENSMUSG00000014601.14	novel	3215	21	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	51.361464153585	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTGTTGCCTTGTGTGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	107539007	107519849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_107520783_107521910_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525706_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107534703_107534779_107535471_107535542_107538816
ENSMUSG00000014602.16_1	chr1	-	5413	47	FSM	ENSMUSG00000014602.16	ENSMUST00000171556.8	5391	47	-23	1	-23	-1	multi-exon	FALSE	canonical	0	0	junction_30	3.30127145123012	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTTGTGCGTGTTGTGG	NA	False	NA	NA	False	NA	NA	NA	93029592	92946002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_92946222_92946673_92946793_92947528_92947722_92948179_92948333_92948934_92949060_92949447_92949526_92950042_92950244_92950647_92950794_92951180_92951243_92952300_92952435_92953342_92953458_92964567_92964674_92966756_92966842_92966938_92967006_92967466_92967576_92968340_92968397_92969295_92969415_92969806_92969898_92970064_92970234_92970337_92970477_92971310_92971397_92974373_92974493_92980145_92980284_92981981_92982161_92982537_92982687_92983406_92983501_92983678_92983752_92983821_92984003_92986535_92986620_92987918_92988026_92988459_92988540_92990221_92990298_92990588_92990669_92991870_92992005_92993768_92993912_92994777_92994857_92996206_92996283_93000029_93000048_93000760_93000827_93001529_93001608_93002677_93002790_93003872_93004052_93004763_93004830_93005409_93005590_93006482_93006560_93010037_93010203_93029484
ENSMUSG00000014602.16_4	chr1	-	5050	43	ISM	ENSMUSG00000014602.16	ENSMUST00000171556.8	5391	47	24572	2	5146	-2	3prime_fragment	FALSE	canonical	0	0	junction_30	3.10520373718587	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGTTGTGCGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	93004997	92946003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_92946222_92946673_92946793_92947528_92947722_92948179_92948333_92948934_92949060_92949447_92949526_92950042_92950244_92950647_92950794_92951180_92951243_92952300_92952435_92953342_92953458_92964567_92964674_92966756_92966842_92966938_92967006_92967466_92967576_92968340_92968397_92969295_92969415_92969806_92969898_92970064_92970234_92970337_92970477_92971310_92971397_92974373_92974493_92980145_92980284_92981981_92982161_92982537_92982687_92983406_92983501_92983678_92983752_92983821_92984003_92986535_92986620_92987918_92988026_92988459_92988540_92990221_92990298_92990588_92990669_92991870_92992005_92993768_92993912_92994777_92994857_92996206_92996283_93000029_93000048_93000760_93000827_93001529_93001608_93002677_93002790_93003872_93004052_93004763
ENSMUSG00000014606.15_13	chr11	-	1459	8	NIC	ENSMUSG00000014606.15	novel	1711	8	NA	NA	21	-129	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	260.48878702022	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCAAATCTGGATAGTC	NA	False	NA	-9	True	AATAAA	-16	NA	70538284	70535150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70538116
ENSMUSG00000014606.15_2	chr11	-	1576	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	128	7	-31	-7	multi-exon	FALSE	canonical	3	687	junction_5	58.5020495018625	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAATGCTGTGTAAAGT	NA	False	NA	-7	True	ATTAAA	-21	NA	70537756	70535028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
ENSMUSG00000014633.16_0	chr8	-	606	4	FSM	ENSMUSG00000014633.16	ENSMUST00000148235.8	1459	4	20	833	4	0	multi-exon	FALSE	canonical	3	303	junction_2	17.3076733143296	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTCCCTTTCTTTAAC	NA	False	NA	-5	True	AATAAA	-15	NA	117648174	117616256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_117616599_117620826_117620899_117637866_117637974_117648089
ENSMUSG00000014633.16_6	chr8	-	532	3	FSM	ENSMUSG00000014633.16	ENSMUST00000078589.7	523	3	4	-13	4	-2	multi-exon	FALSE	canonical	3	30	junction_1	157.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGGCCTCCCTTTCTTTA	NA	False	NA	-7	True	AATAAA	-13	NA	117648174	117616258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_117616599_117637866_117637974_117648089
ENSMUSG00000014633.16_7	chr8	-	2538	2	ISM	ENSMUSG00000014633.16	ENSMUST00000128304.2	394	3	-544	19624	-454	-19624	5prime_fragment	FALSE	canonical	3	345	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTTGTGTGGACATCT	NA	False	NA	NA	False	NA	NA	NA	117648648	117635994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_117637974_117648089
ENSMUSG00000014668.16_0	chr5	+	3144	18	FSM	ENSMUSG00000014668.16	ENSMUST00000112519.9	3159	18	12	3	1	-1	multi-exon	FALSE	canonical	3	248	junction_2	36.3883322871989	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTGTGTTGTACTCCT	NA	False	NA	18	True	AATAAA	-18	NA	110283726	110319834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ENSMUSG00000014668.16_16	chr5	+	3039	17	NIC	ENSMUSG00000014668.16	novel	3159	18	NA	NA	6	-1	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	81.0771237773023	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTGTGTTGTACTCCT	NA	False	NA	18	True	AATAAA	-18	NA	110283731	110319834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_110283801_110283916_110284061_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ENSMUSG00000014668.16_2	chr5	+	3141	18	FSM	ENSMUSG00000014668.16	ENSMUST00000014812.13	3146	18	1	4	1	-1	multi-exon	FALSE	canonical	3	81	junction_11	67.7699140155478	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTGTGTTGTACTCCT	NA	False	NA	18	True	AATAAA	-18	NA	110283726	110319834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306667_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ENSMUSG00000014668.16_20	chr5	+	3208	19	NIC	ENSMUSG00000014668.16	novel	3201	19	NA	NA	7	-1	combination_of_known_junctions	FALSE	canonical	3	66	junction_2	100.199800399003	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTGTGTTGTACTCCT	NA	False	NA	18	True	AATAAA	-18	NA	110283732	110319834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_110283801_110283916_110284061_110287982_110288056_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306667_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ENSMUSG00000014668.16_3	chr5	+	3217	19	FSM	ENSMUSG00000014668.16	ENSMUST00000198066.5	3201	19	-16	0	2	0	multi-exon	FALSE	canonical	3	66	junction_2	86.3223931292197	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTGTTGTACTCCTG	NA	False	NA	19	True	AATAAA	-19	NA	110283727	110319835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110283801_110283916_110284061_110287982_110288056_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ENSMUSG00000014668.16_6	chr5	+	3113	18	NIC	ENSMUSG00000014668.16	novel	3159	18	NA	NA	-8	-1	combination_of_known_junctions	FALSE	canonical	3	47	junction_2	73.7381038437897	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTGTGTTGTACTCCT	NA	False	NA	18	True	AATAAA	-18	NA	110283735	110319834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_110283801_110283916_110284061_110288241_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ENSMUSG00000014686.9_1	chr7	-	1038	4	ISM	ENSMUSG00000014686.9	ENSMUST00000014830.8	1635	6	3265	1	-1798	0	3prime_fragment	FALSE	canonical	0	0	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGGTGTCAGCCTCTCC	860	False	NA	NA	False	CATAAA	-16	NA	19591959	19586022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19586239_19587496_19587824_19589998_19590278_19591743
ENSMUSG00000014748.14_0	chr6	-	2952	6	FSM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	27	5	4	-5	multi-exon	FALSE	canonical	3	526	junction_1	47.9474712576169	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTGAGCTGTAGTGTG	9739	False	NA	-9	True	NA	NA	NA	83752768	83745871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999_83752080_83752635
ENSMUSG00000014748.14_4	chr6	-	1743	1	ISM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	5181	5	1843	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTGAGCTGTAGTGTG	NA	False	NA	-9	True	NA	NA	NA	83747614	83745871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_83745900_83747600
ENSMUSG00000014748.14_8	chr6	-	3459	5	ISM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	76	5	21	-5	intron_retention	FALSE	canonical	3	526	junction_1	53.5397048927242	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTGAGCTGTAGTGTG	9788	False	NA	-9	True	NA	NA	NA	83752719	83745871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999
ENSMUSG00000014763.9_0	chr17	+	2949	11	FSM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	69	1402	23	-1402	multi-exon	TRUE	canonical	2	12	junction_2	12.6526677028997	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTCATTAGTCTTTGAA	NA	False	NA	3	True	ATTAAA	-17	NA	15616532	15652298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_15616823_15622006_15623392_15626016_15626198_15627858_15627961_15634940_15635114_15637894_15637988_15643139_15643347_15644531_15644641_15646450_15646538_15651838_15651891_15652028
ENSMUSG00000014763.9_1	chr17	+	2662	2	ISM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	69	29322	23	-4737	5prime_fragment	FALSE	canonical	3	53	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTTTTCTTTGTTTTTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	15616532	15624378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15616823_15622006
ENSMUSG00000014767.18_0	chr17	+	1821	9	FSM	ENSMUSG00000014767.18	ENSMUST00000014911.12	1891	9	52	18	12	-18	multi-exon	FALSE	canonical	3	123	junction_2	77.8728932299295	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGCCTGAGACCATTGT	NA	False	NA	5	True	AAGAAA	-13	NA	15720201	15737671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_15720287_15721415_15721465_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ENSMUSG00000014767.18_2	chr17	+	1772	8	FSM	ENSMUSG00000014767.18	ENSMUST00000162505.8	12794	8	52	10970	12	-18	multi-exon	FALSE	canonical	3	150	junction_1	66.6565978791022	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGCCTGAGACCATTGT	NA	False	NA	5	True	AAGAAA	-13	NA	15720201	15737671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ENSMUSG00000014767.18_20	chr17	+	1971	9	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	-14	-17	intron_retention	FALSE	canonical	3	87	junction_2	86.7564839075443	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGCCTGAGACCATTGTT	NA	False	NA	6	True	AAGAAA	-14	NA	15720207	15737672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_15720287_15721415_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ENSMUSG00000014767.18_3	chr17	+	1868	10	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	12	-17	combination_of_known_junctions	FALSE	canonical	3	42	junction_2	107.763229258625	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGCCTGAGACCATTGTT	NA	False	NA	6	True	AAGAAA	-14	NA	15720201	15737672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_15720287_15721415_15721465_15721573_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ENSMUSG00000014767.18_5	chr17	+	3116	8	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	3	-16	intron_retention	TRUE	canonical	3	87	junction_1	85.9499142239365	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCTGAGACCATTGTTT	NA	False	NA	7	True	AAGAAA	-15	NA	15720192	15737673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ENSMUSG00000014769.11_0	chr17	-	815	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	4	939	4	-1	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	1468	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCATTTTCTTACACTGTG	NA	False	NA	-14	True	ATTAAA	-14	NA	15718556	15696221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
ENSMUSG00000014771.14_1	chr17	-	1083	6	FSM	ENSMUSG00000014771.14	ENSMUST00000054450.7	1120	6	9	28	9	-10	multi-exon	FALSE	canonical	3	811	junction_3	58.5409258553364	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACTTAAATAAAAACTA	NA	False	NA	-42	True	NA	NA	NA	15747554	15741864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747252
ENSMUSG00000014771.14_3	chr17	-	1104	6	NIC	ENSMUSG00000014771.14	novel	1120	6	NA	NA	62	-11	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	344.156592265788	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAACTTAAATAAAAACT	NA	False	NA	-43	True	NA	NA	NA	15747481	15741865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747157
ENSMUSG00000014773.14_0	chr17	-	3575	11	FSM	ENSMUSG00000014773.14	ENSMUST00000014917.8	3581	11	2	4	2	-4	multi-exon	FALSE	canonical	2	3	junction_7	1.34536240470737	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTCAGGTGTGACTTT	NA	False	NA	NA	False	AATAAA	-12	NA	15596236	15587619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_15588298_15588395_15588514_15588628_15589428_15590468_15590686_15590792_15590963_15591084_15591216_15591867_15591929_15593698_15593957_15594151_15594213_15594927_15595222_15595448
ENSMUSG00000014776.8_0	chr8	+	969	4	FSM	ENSMUSG00000014776.8	ENSMUST00000014920.8	3176	4	319	1888	319	-1888	multi-exon	FALSE	canonical	2	9	junction_3	2.05480466765633	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTTTGCTCAAGAACTGA	NA	False	NA	23	True	AATAAA	-41	NA	106003090	106006683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106003246_106005605_106005903_106006047_106006408_106006526
ENSMUSG00000014778.11_0	chr8	-	1463	8	ISM	ENSMUSG00000014778.11	ENSMUST00000014922.5	3928	22	16195	1	-192	-1	3prime_fragment	FALSE	canonical	2	3	junction_2	1.90595200916091	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGAGCCTTTCTCTTCTT	847	False	NA	-2	True	AATAAA	-18	NA	106058390	106055795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106056112_106056200_106056402_106056478_106056642_106056726_106056920_106057018_106057210_106057760_106057923_106058001_106058122_106058273
ENSMUSG00000014778.11_1	chr8	-	112	1	ISM	ENSMUSG00000014778.11	ENSMUST00000132777.8	4304	20	18634	1	2291	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGAGCCTTTCTCTTCTT	3330	False	NA	-2	True	AATAAA	-18	NA	106055907	106055795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106055800_106055900
ENSMUSG00000014782.17_10	chr8	+	2863	13	ISM	ENSMUSG00000014782.17	ENSMUST00000014927.8	4167	21	2225	8	2225	-1	3prime_fragment	FALSE	canonical	2	5	junction_5	3.37782803325187	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTTGACTGGGCATATGC	NA	False	NA	NA	False	AATAAA	-16	NA	106104237	106109486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106104310_106104398_106104516_106104931_106105115_106105312_106105819_106105886_106106134_106106754_106106845_106106925_106107148_106107233_106107405_106107482_106107661_106108026_106108144_106108265_106108491_106108572_106108689_106108867
ENSMUSG00000014782.17_14	chr8	+	2859	12	ISM	ENSMUSG00000014782.17	ENSMUST00000014927.8	4167	21	2324	2	2324	1	3prime_fragment	FALSE	canonical	2	5	junction_4	3.35994883865024	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGCATATGCATTCTG	NA	False	NA	NA	False	AATAAA	-22	NA	106104336	106109492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106104516_106104931_106105115_106105312_106105819_106105886_106106134_106106754_106106845_106106925_106107148_106107233_106107405_106107482_106107661_106108026_106108144_106108265_106108491_106108572_106108689_106108867
ENSMUSG00000014782.17_8	chr8	+	4156	22	NIC	ENSMUSG00000014782.17	novel	4167	21	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	4.15078606330303	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTTGACTGGGCATATGC	NA	False	NA	NA	False	AATAAA	-16	NA	106101533	106109486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106101614_106102095_106102488_106102647_106102744_106102821_106102946_106103051_106103146_106103225_106103301_106103380_106103498_106103668_106103768_106103856_106104006_106104170_106104310_106104398_106104516_106104931_106105115_106105312_106105819_106105886_106106134_106106754_106106845_106106925_106107148_106107233_106107405_106107482_106107661_106108026_106108144_106108265_106108491_106108572_106108689_106108867
ENSMUSG00000014786.9_0	chr8	+	4001	16	FSM	ENSMUSG00000014786.9	ENSMUST00000073149.7	3499	16	97	-599	97	-539	multi-exon	FALSE	canonical	0	0	junction_14	2.98589275687449	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGAGCGTCCTCTGTC	NA	False	NA	NA	False	ATTAAA	-11	NA	106075571	106095974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106076205_106080054_106080358_106081775_106081940_106082102_106082182_106082478_106082657_106083162_106083384_106083602_106083806_106084025_106084116_106084212_106084284_106085005_106085136_106085723_106085813_106085958_106086086_106089894_106090066_106090568_106090639_106091313_106091449_106094637
ENSMUSG00000014786.9_10	chr8	+	2005	2	ISM	ENSMUSG00000014786.9	ENSMUST00000212772.2	3972	11	8688	538	8688	-538	3prime_fragment	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGAGCGTCCTCTGTCC	9370	False	NA	NA	False	ATTAAA	-12	NA	106090781	106095975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106091449_106094637
ENSMUSG00000014786.9_11	chr8	+	899	1	ISM	ENSMUSG00000014786.9	ENSMUST00000212772.2	3972	11	12980	541	12980	-541	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAATGAGCGTCCTCTG	NA	False	NA	NA	False	ATTAAA	-9	NA	106095073	106095972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106095100_106096000
ENSMUSG00000014786.9_2	chr8	+	3837	15	NIC	ENSMUSG00000014786.9	novel	3499	16	NA	NA	481	-538	intron_retention	FALSE	canonical	0	0	junction_13	2.78204887059292	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGAGCGTCCTCTGTCC	NA	False	NA	NA	False	ATTAAA	-12	NA	106075955	106095975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106076205_106080054_106080358_106081775_106081940_106082102_106082182_106082478_106082657_106083162_106083806_106084025_106084116_106084212_106084284_106085005_106085136_106085723_106085813_106085958_106086086_106089894_106090066_106090568_106090639_106091313_106091449_106094637
ENSMUSG00000014791.11_0	chr8	+	2406	20	FSM	ENSMUSG00000014791.11	ENSMUST00000109375.4	3189	20	-1	784	-1	-1	multi-exon	FALSE	canonical	2	9	junction_11	6.90778195396653	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATGTGTTAAATCAGCT	NA	False	NA	5	True	AATAAA	-16	NA	106032239	106036608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106032462_106032598_106032640_106032746_106032820_106033009_106033061_106033227_106033398_106033485_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034433_106034566_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
ENSMUSG00000014791.11_1	chr8	+	2356	19	FSM	ENSMUSG00000014791.11	ENSMUST00000212033.2	2351	19	-6	1	-2	-1	multi-exon	FALSE	canonical	1	1	junction_3	8.33425920782464	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATGTGTTAAATCAGCT	NA	False	NA	5	True	AATAAA	-16	NA	106032238	106036608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106032462_106032598_106032640_106032746_106032820_106033227_106033398_106033485_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034433_106034566_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
ENSMUSG00000014791.11_6	chr8	+	2265	19	NIC	ENSMUSG00000014791.11	novel	3189	20	NA	NA	2	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	8.12403840463596	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGTATGTGTTAAATCAG	NA	False	NA	3	True	AATAAA	-14	NA	106032246	106036606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106032462_106032598_106032640_106032746_106032820_106033009_106033061_106033227_106033398_106033485_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
ENSMUSG00000014791.11_9	chr8	+	2166	1	Genic_Genomic	ENSMUSG00000014791.11	novel	NA	NA	NA	NA	2697	447	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACCAAAACCAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	106035673	106037839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_106035700_106037800
ENSMUSG00000014837.16_0	chr8	-	3331	7	FSM	ENSMUSG00000014837.16	ENSMUST00000212922.2	3313	7	-25	7	3	-6	multi-exon	FALSE	canonical	3	15	junction_6	9.72396809720988	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGATGTGTGTGGCTTC	NA	False	NA	-9	True	NA	NA	NA	106015707	106007047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015400
ENSMUSG00000014837.16_12	chr8	-	209	1	ISM	ENSMUSG00000014837.16	ENSMUST00000212922.2	3313	7	8432	1	8432	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGTGGCTTCTGTCTA	4196	False	NA	-3	True	NA	NA	NA	106007250	106007041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106007000_106007200
ENSMUSG00000014837.16_13	chr8	-	3505	8	NIC	ENSMUSG00000014837.16	novel	3552	8	NA	NA	-7	-6	combination_of_known_junctions	FALSE	canonical	1	2	junction_6	13.7707172311839	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGATGTGTGTGGCTTC	NA	False	NA	-9	True	NA	NA	NA	106016143	106007047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015424_106015798_106016035
ENSMUSG00000014837.16_2	chr8	-	1857	7	FSM	ENSMUSG00000014837.16	ENSMUST00000014981.8	3492	7	365	1270	5	3	multi-exon	FALSE	canonical	3	11	junction_6	11.0302614051829	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTTGGGTGTCTGGTAC	NA	False	NA	NA	False	AATAGA	-44	NA	106016131	106008310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106016035
ENSMUSG00000014837.16_4	chr8	-	3519	8	FSM	ENSMUSG00000014837.16	ENSMUST00000171788.8	3552	8	27	6	3	-6	multi-exon	FALSE	canonical	3	15	junction_6	10.3628063333269	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGATGTGTGTGGCTTC	NA	False	NA	-9	True	NA	NA	NA	106016133	106007047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015400_106015798_106016035
ENSMUSG00000014837.16_5	chr8	-	2763	6	ISM	ENSMUSG00000014837.16	ENSMUST00000212922.2	3313	7	3444	5	3444	-4	3prime_fragment	FALSE	canonical	3	31	junction_5	5.46260011349906	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGATGTGTGTGGCTTCTG	NA	False	NA	-7	True	NA	NA	NA	106012238	106007045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887
ENSMUSG00000014837.16_6	chr8	-	1855	3	ISM	ENSMUSG00000014837.16	ENSMUST00000212922.2	3313	7	5848	7	5848	-6	3prime_fragment	FALSE	canonical	3	42	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGATGTGTGTGGCTTC	1612	False	NA	-9	True	NA	NA	NA	106009834	106007047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106008777_106009618_106009717_106009806
ENSMUSG00000014837.16_9	chr8	-	3739	7	FSM	ENSMUSG00000014837.16	ENSMUST00000212219.2	2044	7	-433	-1262	-7	-10	multi-exon	FALSE	canonical	1	2	junction_6	14.1037819986934	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACAATGATGTGTGTGG	NA	False	NA	-13	True	NA	NA	NA	106016143	106007051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015424
ENSMUSG00000014846.13_0	chr8	-	984	4	FSM	ENSMUSG00000014846.13	ENSMUST00000014990.13	1127	4	137	6	137	-6	multi-exon	FALSE	canonical	2	4	junction_3	3.55902608401044	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGGATGGACTGACTCAG	NA	False	NA	-6	True	AATAAA	-13	NA	106198021	106194130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106194657_106194787_106194942_106195071_106195266_106197911
ENSMUSG00000014850.16_0	chr13	-	3907	24	FSM	ENSMUSG00000014850.16	ENSMUST00000022220.13	3937	24	24	6	6	-6	multi-exon	FALSE	canonical	0	0	junction_18	29.9229002971439	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAATACTTGCTCATTGC	NA	False	NA	NA	False	AATAAA	-8	NA	92491487	92348399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372237_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481610_92483240_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
ENSMUSG00000014850.16_1	chr13	-	3922	24	FSM	ENSMUSG00000014850.16	ENSMUST00000185852.7	3946	24	8	16	-2	-2	multi-exon	FALSE	canonical	0	0	junction_18	25.3850498550558	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTTGCTCATTGCATGG	NA	False	NA	NA	False	AATAAA	-12	NA	92491495	92348395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372240_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481610_92483240_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
ENSMUSG00000014856.13_0	chr8	+	805	6	FSM	ENSMUSG00000014856.13	ENSMUST00000153146.9	801	6	-6	2	2	1	multi-exon	FALSE	canonical	3	25	junction_4	152.856010676715	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACGGCCGTGTGGGTGAT	253	False	NA	14	True	AATAAA	-16	NA	106052987	106055685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055117_106055239_106055325_106055403
ENSMUSG00000014856.13_1	chr8	+	907	5	FSM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	-10	-2	-10	-1	multi-exon	FALSE	canonical	3	392	junction_2	13.1909059582729	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGGCCGTGTGGGTGATG	-9	True	NA	15	True	AATAAA	-17	NA	106053009	106055686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055325_106055403
ENSMUSG00000014856.13_2	chr8	+	756	6	FSM	ENSMUSG00000014856.13	ENSMUST00000015000.12	785	6	24	5	-10	0	multi-exon	FALSE	canonical	3	269	junction_4	56.0556865982391	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACGGCCGTGTGGGTGA	-9	True	NA	13	True	AATAAA	-15	NA	106053009	106055684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055091_106055239_106055325_106055403
ENSMUSG00000014856.13_6	chr8	+	988	4	ISM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	-11	-3	-11	0	intron_retention	FALSE	canonical	3	392	junction_2	12.9614813968157	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGCCGTGTGGGTGATGA	274	False	NA	16	True	AATAAA	-18	NA	106053008	106055687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953
ENSMUSG00000014859.10_0	chr8	+	1955	10	FSM	ENSMUSG00000014859.10	ENSMUST00000015003.10	1993	10	36	2	-18	-2	multi-exon	TRUE	canonical	0	0	junction_3	369.398142461925	1608	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTCTGATCTGGTTCTTT	NA	False	NA	19	True	AATAAA	-15	NA	106024330	106032000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106024508_106024912_106025023_106025166_106025329_106025627_106025672_106026689_106026752_106026950_106027249_106027884_106028098_106030816_106030865_106031064_106031110_106031204
ENSMUSG00000014867.10_1	chr2	-	2794	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	485	2	-60	-2	multi-exon	TRUE	canonical	3	778	junction_1	38.262252939418	1310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATAGTGTGGTCCTATAT	NA	False	NA	-4	True	AATAAA	-16	NA	26823455	26810053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
ENSMUSG00000014867.10_2	chr2	-	1637	1	ISM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	12251	1	11706	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAGTGTGGTCCTATATG	NA	False	NA	-3	True	AATAAA	-17	NA	26811689	26810052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26810100_26811700
ENSMUSG00000014873.16_0	chr2	+	1169	6	FSM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	19	15	5	2	multi-exon	FALSE	canonical	3	245	junction_5	33.4388995034227	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTTTTGCCAAACCAAT	NA	False	NA	22	True	CATAAA	-17	NA	26806397	26810180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809738
ENSMUSG00000014873.16_1	chr2	+	1178	6	NIC	ENSMUSG00000014873.16	novel	1203	6	NA	NA	4	2	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	119.474516111177	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTTTTGCCAAACCAAT	NA	False	NA	22	True	CATAAA	-17	NA	26806396	26810180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808876_26809068_26809203_26809371_26809738
ENSMUSG00000014873.16_10	chr2	+	2511	5	FSM	ENSMUSG00000014873.16	ENSMUST00000126947.8	2519	5	4	4	4	2	multi-exon	FALSE	canonical	3	245	junction_4	33.741665637606	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTTTTGCCAAACCAAT	NA	False	NA	22	True	CATAAA	-17	NA	26806396	26810180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26806516_26806716_26806872_26807439_26809068_26809203_26809371_26809738
ENSMUSG00000014873.16_14	chr2	+	2878	4	ISM	ENSMUSG00000014873.16	ENSMUST00000126947.8	2519	5	5	4	5	2	intron_retention	FALSE	canonical	3	305	junction_3	11.1455023315337	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTTTTGCCAAACCAAT	NA	False	NA	22	True	CATAAA	-17	NA	26806397	26810180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_26806516_26806716_26806872_26807439_26809068_26809203
ENSMUSG00000014873.16_2	chr2	+	1089	6	NIC	ENSMUSG00000014873.16	novel	1203	6	NA	NA	27	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_3	115.994827470883	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACTTTTGCCAAACCA	NA	False	NA	20	True	CATAAA	-44	NA	26806419	26810178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808940_26809068_26809203_26809371_26809738
ENSMUSG00000014873.16_23	chr2	+	481	2	ISM	ENSMUSG00000014873.16	ENSMUST00000157066.8	736	5	2507	-215	1892	2	3prime_fragment	FALSE	canonical	3	245	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTTTTGCCAAACCAAT	NA	False	NA	22	True	CATAAA	-17	NA	26809331	26810180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_26809371_26809738
ENSMUSG00000014873.16_3	chr2	+	1305	6	NIC	ENSMUSG00000014873.16	novel	1203	6	NA	NA	7	2	combination_of_known_junctions	TRUE	canonical	3	27	junction_5	113.91821627817	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTTTTGCCAAACCAAT	NA	False	NA	22	True	CATAAA	-17	NA	26806385	26810180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809614
ENSMUSG00000014873.16_7	chr2	+	2693	4	NIC	ENSMUSG00000014873.16	novel	2519	5	NA	NA	21	0	intron_retention	FALSE	canonical	3	245	junction_3	36.3593179253957	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACTTTTGCCAAACCA	NA	False	NA	20	True	CATAAA	-44	NA	26806413	26810178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_26806872_26807439_26809068_26809203_26809371_26809738
ENSMUSG00000014905.5_1	chr12	-	1278	1	Genic_Genomic	ENSMUSG00000014905.5	novel	NA	NA	NA	NA	3233	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACGTGCTTGGAATGATT	NA	False	NA	NA	False	AATAAA	-17	NA	44253618	44252340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_44252300_44253600
ENSMUSG00000014905.5_2	chr12	-	1864	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	258	339	0	-339	multi-exon	FALSE	canonical	3	92	junction_1	7	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCTTCAGTGTTGTCATT	NA	False	NA	NA	False	TATAAA	-12	NA	44256851	44252680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_44254189_44254869_44255097_44256722
ENSMUSG00000014905.5_3	chr12	-	1926	2	ISM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	2155	6	1897	-6	3prime_fragment	FALSE	canonical	3	92	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACACATGACGTGCTTGG	NA	False	NA	NA	False	AATAAA	-10	NA	44254954	44252347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_44254189_44254869
ENSMUSG00000014907.11_15	chr8	+	492	1	ISM	ENSMUSG00000014907.11	ENSMUST00000118009.2	2990	8	29848	8	29108	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTGAATTTAGAGTTT	9458	False	NA	6	True	AATAAA	-14	NA	67342716	67343208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_67342700_67343200
ENSMUSG00000014907.11_4	chr8	+	2685	9	NNC	ENSMUSG00000014907.11	novel	2990	8	NA	NA	45	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	23.6801604724292	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTGAATTTAGAGTTT	NA	False	NA	6	True	AATAAA	-14	NA	67312913	67343208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_67313152_67313403_67313699_67317189_67317353_67330318_67330413_67332250_67332334_67336094_67336256_67338416_67338469_67340424_67340528_67341712
ENSMUSG00000014907.11_5	chr8	+	2937	8	FSM	ENSMUSG00000014907.11	ENSMUST00000118009.2	2990	8	45	8	45	-8	multi-exon	FALSE	canonical	3	67	junction_6	3.64215679542342	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTGAATTTAGAGTTT	NA	False	NA	6	True	AATAAA	-14	NA	67312913	67343208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_67313699_67317189_67317353_67330318_67330413_67332250_67332334_67336094_67336256_67338416_67338469_67340424_67340528_67341712
ENSMUSG00000014907.11_7	chr8	+	1648	5	ISM	ENSMUSG00000014907.11	ENSMUST00000118009.2	2990	8	46	6598	46	369	5prime_fragment	FALSE	canonical	3	70	junction_2	3.69966214673719	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTGTGGGGTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	67312914	67336618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_67313699_67317189_67317353_67330318_67330413_67332250_67332334_67336094
ENSMUSG00000014932.16_2	chr5	+	4590	12	FSM	ENSMUSG00000014932.16	ENSMUST00000072311.13	4586	12	-7	3	6	-3	multi-exon	FALSE	canonical	3	102	junction_1	199.348401357942	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCTATGTATTCTTTTCT	NA	False	NA	5	True	AATAAA	-15	NA	32768520	32844398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_32769182_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
ENSMUSG00000014932.16_3	chr5	+	4126	12	FSM	ENSMUSG00000014932.16	ENSMUST00000202543.4	2657	12	5	-1474	5	-6	multi-exon	FALSE	canonical	3	599	junction_1	80.0238600782178	1124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATCTATGTATTCTTT	NA	False	NA	2	True	AATAAA	-12	NA	32768519	32844395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_32768720_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
ENSMUSG00000014932.16_4	chr5	+	3852	11	NIC	ENSMUSG00000014932.16	novel	2657	12	NA	NA	6	-6	intron_retention	FALSE	canonical	3	32	junction_1	229.089414858042	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATCTATGTATTCTTT	NA	False	NA	2	True	AATAAA	-12	NA	32768520	32844395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_32768720_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
ENSMUSG00000014932.16_99	chr5	+	1552	1	ISM	ENSMUSG00000014932.16	ENSMUST00000072311.13	4586	12	74321	1	45974	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTATGTATTCTTTTCTGT	4747	False	NA	7	True	AATAAA	-17	NA	32842848	32844400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_32842800_32844400
ENSMUSG00000014956.16_0	chr5	+	2902	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	287	2773	-22	-6	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	2332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAACGTCTGAGTGATTA	2982	False	NA	17	True	AGTAAA	-14	NA	32616473	32650094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
ENSMUSG00000014956.16_5	chr5	+	2408	6	NIC	ENSMUSG00000014956.16	novel	5962	8	NA	NA	9	-6	intron_retention	FALSE	canonical	0	0	junction_1	552.155050687757	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAACGTCTGAGTGATTA	3047	False	NA	17	True	AGTAAA	-14	NA	32616538	32650094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_32616752_32640769_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
ENSMUSG00000014956.16_56	chr5	+	1229	1	ISM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	32679	2773	5552	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAACGTCTGAGTGATTA	NA	False	NA	17	True	AGTAAA	-14	NA	32648865	32650094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_32648900_32650100
ENSMUSG00000014959.13_0	chr2	+	2204	10	FSM	ENSMUSG00000014959.13	ENSMUST00000028509.11	2238	10	14	20	0	2	multi-exon	FALSE	canonical	3	519	junction_9	56.2121203045731	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTGTGTTCTAAGTGG	NA	False	NA	18	True	AATAAA	-18	NA	70491933	70522067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526_70519647_70521001
ENSMUSG00000014959.13_2	chr2	+	1200	9	FSM	ENSMUSG00000014959.13	ENSMUST00000112205.2	1196	9	-8	4	6	-4	multi-exon	FALSE	canonical	3	630	junction_6	27.9463772249642	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGCGAGGCCTCCCGTTC	NA	False	NA	5	True	AATAAA	-14	NA	70491925	70519700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526
ENSMUSG00000014980.15_0	chr1	-	1061	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	60	12	-2	-12	multi-exon	FALSE	canonical	3	212	junction_4	96.4219243740758	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCTTGAAATCTGTCGT	NA	False	NA	-17	True	AATAAA	-17	NA	152262373	152246497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
ENSMUSG00000015002.19_1	chr15	+	5147	23	FSM	ENSMUSG00000015002.19	ENSMUST00000015146.16	5215	23	9	59	1	-59	multi-exon	FALSE	canonical	3	451	junction_16	48.5493912261498	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTTCATTGTGCAATC	NA	False	NA	18	True	AATAAA	-18	NA	65658897	65745606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001
ENSMUSG00000015002.19_4	chr15	+	5247	23	NIC	ENSMUSG00000015002.19	novel	5215	23	NA	NA	0	-29	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	114.718520052236	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAACAAAAATAGCATC	NA	False	NA	-12	True	NA	NA	NA	65658894	65745636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_65659096_65687183_65687328_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001
ENSMUSG00000015002.19_85	chr15	+	2027	1	ISM	ENSMUSG00000015002.19	ENSMUST00000015146.16	5215	23	84743	7	14275	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTATAAGTGCATTTTT	NA	False	NA	10	True	AATAAA	-17	NA	65743631	65745658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_65743600_65745700
ENSMUSG00000015013.10_0	chr8	+	588	5	FSM	ENSMUSG00000015013.10	ENSMUST00000015157.10	1659	5	-2	1073	-2	-1073	multi-exon	FALSE	canonical	3	528	junction_1	75.9884859699152	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATCTACGTTGTCCTGTG	5520	False	NA	22	True	ACTAAA	-14	NA	123338382	123342326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123338433_123339804_123339978_123340659_123340748_123341046_123341127_123342129
ENSMUSG00000015013.10_2	chr8	+	888	4	NIC	ENSMUSG00000015013.10	novel	1659	5	NA	NA	2	-1073	intron_retention	FALSE	canonical	3	528	junction_1	87.3473271231327	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATCTACGTTGTCCTGTG	5519	False	NA	22	True	ACTAAA	-14	NA	123338381	123342326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_123338433_123339804_123339978_123340659_123341127_123342129
ENSMUSG00000015016.9_0	chr8	+	2204	10	FSM	ENSMUSG00000015016.9	ENSMUST00000015160.6	2206	10	0	2	0	-2	multi-exon	FALSE	canonical	2	11	junction_1	8.97458689169274	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGTGACCTGTGAGCTG	9534	False	NA	11	True	AATAAA	-23	NA	123502243	123544617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123502330_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
ENSMUSG00000015016.9_1	chr8	+	2493	9	ISM	ENSMUSG00000015016.9	ENSMUST00000212790.2	2171	10	-73	3471	0	-17	5prime_fragment	FALSE	canonical	3	16	junction_1	7.75302360373035	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGCTGGCTTGCCCCATG	9534	False	NA	NA	False	NA	NA	NA	123502243	123541148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123502368_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298
ENSMUSG00000015016.9_10	chr8	+	1959	9	ISM	ENSMUSG00000015016.9	ENSMUST00000212790.2	2171	10	4528	1	4528	-1	3prime_fragment	FALSE	canonical	3	26	junction_1	4.67540105231626	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGACCTGTGAGCTGT	NA	False	NA	12	True	AATAAA	-24	NA	123506844	123544618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
ENSMUSG00000015016.9_3	chr8	+	2244	10	FSM	ENSMUSG00000015016.9	ENSMUST00000212790.2	2171	10	-73	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	7.64489662745314	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGACCTGTGAGCTGTG	9534	False	NA	13	True	AATAAA	-25	NA	123502243	123544619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123502368_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
ENSMUSG00000015016.9_6	chr8	+	2445	9	ISM	ENSMUSG00000015016.9	ENSMUST00000015160.6	2206	10	0	3481	0	-27	5prime_fragment	FALSE	canonical	2	11	junction_1	9.16174110090435	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATACTGCACTGGCTGGC	9534	False	NA	NA	False	NA	NA	NA	123502243	123541138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123502330_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298
ENSMUSG00000015016.9_8	chr8	+	2331	8	NIC	ENSMUSG00000015016.9	novel	2206	10	NA	NA	0	-33	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	13.8755400703864	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCCACCATACTGCACTG	9534	False	NA	NA	False	NA	NA	NA	123502243	123541132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_123502368_123506684_123507375_123508171_123508328_123510685_123510841_123517328_123517439_123529253_123529381_123539733_123539869_123540298
ENSMUSG00000015023.8_0	chr8	-	2543	12	FSM	ENSMUSG00000015023.8	ENSMUST00000040416.8	2547	12	4	0	4	0	multi-exon	FALSE	canonical	3	259	junction_8	46.4642402265948	427	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTTTGTGTACACTT	7690	False	NA	-28	True	ATTAAA	-10	NA	111724428	111701627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
ENSMUSG00000015027.12_2	chr8	-	2493	14	FSM	ENSMUSG00000015027.12	ENSMUST00000015171.11	2557	14	64	0	5	0	multi-exon	FALSE	canonical	3	11	junction_10	4.2966892442366	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATCCTGGTCTTTTGTT	NA	False	NA	-4	True	NA	NA	NA	123338138	123304980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123318176_123318280_123318939_123319077_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
ENSMUSG00000015027.12_3	chr8	-	1580	7	ISM	ENSMUSG00000015027.12	ENSMUST00000015171.11	2557	14	12908	-4	12849	4	3prime_fragment	FALSE	canonical	3	13	junction_3	4.60675832036175	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGGTCTTTTGTTTGTT	NA	False	NA	0	True	NA	NA	NA	123325294	123304976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123305937_123307789_123307908_123311650_123311773_123318176_123318280_123318939_123319077_123322504_123322609_123325258
ENSMUSG00000015027.12_5	chr8	-	4488	12	ISM	ENSMUSG00000015027.12	ENSMUST00000015171.11	2557	14	83	3582	24	-2886	5prime_fragment	FALSE	canonical	3	11	junction_8	4.39571541954058	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123338119	123308562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123311773_123318176_123318280_123318939_123319077_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
ENSMUSG00000015027.12_9	chr8	-	2258	13	ISM	ENSMUSG00000015027.12	ENSMUST00000015171.11	2557	14	6263	0	6204	0	3prime_fragment	FALSE	canonical	3	11	junction_10	4.43157860010278	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATCCTGGTCTTTTGTT	NA	False	NA	-4	True	NA	NA	NA	123331939	123304980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123305937_123307789_123307908_123311650_123311773_123318176_123318280_123318939_123319077_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878
ENSMUSG00000015053.15_0	chr6	+	3300	6	FSM	ENSMUSG00000015053.15	ENSMUST00000170089.8	3135	6	-169	4	-169	-2	multi-exon	FALSE	canonical	3	10	junction_1	57.164324538999	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGCTGTCGCCTGTTGA	NA	False	NA	10	True	AATAAA	-11	NA	88170703	88184010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_88170983_88176498_88176772_88177200_88177843_88179400_88179547_88181564_88181691_88182176
ENSMUSG00000015053.15_1	chr6	+	2146	4	ISM	ENSMUSG00000015053.15	ENSMUST00000015197.9	3571	6	1955	534	-630	-534	3prime_fragment	FALSE	canonical	3	138	junction_2	11.8602979164381	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCACAGTCCTTTGAGT	NA	False	NA	15	True	AATAAA	-23	NA	88177270	88183478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_88177843_88179400_88179547_88181564_88181691_88182176
ENSMUSG00000015053.15_13	chr6	+	1935	2	FSM	ENSMUSG00000015053.15	ENSMUST00000203579.2	841	2	164	-1258	164	-1	multi-exon	FALSE	canonical	3	167	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGTCGCCTGTTGAG	NA	False	NA	11	True	AATAAA	-12	NA	88181590	88184011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_88181691_88182176
ENSMUSG00000015053.15_2	chr6	+	3232	6	FSM	ENSMUSG00000015053.15	ENSMUST00000015197.9	3571	6	335	4	335	-4	multi-exon	FALSE	canonical	3	138	junction_4	9.31665175908169	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAATGCTGTCGCCTGTT	NA	False	NA	8	True	AATAAA	-9	NA	88175650	88184008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_88175864_88176498_88176772_88177200_88177843_88179400_88179547_88181564_88181691_88182176
ENSMUSG00000015083.12_0	chr2	-	1207	7	FSM	ENSMUSG00000015083.12	ENSMUST00000040042.11	1150	7	-62	5	-62	0	multi-exon	FALSE	canonical	3	9	junction_1	2.38047614284762	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGTCTTTTGTCGTTTT	NA	False	NA	-6	True	ATTAAA	-14	NA	25390687	25388667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25388836_25388916_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25390105
ENSMUSG00000015083.12_1	chr2	-	1607	4	NIC	ENSMUSG00000015083.12	novel	868	6	NA	NA	-29	0	intron_retention	FALSE	canonical	3	13	junction_2	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGTCTTTTGTCGTTTT	NA	False	NA	-6	True	ATTAAA	-14	NA	25390654	25388667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25389518_25389600_25389672_25389850_25389988_25390105
ENSMUSG00000015085.9_0	chr2	+	1998	8	NIC	ENSMUSG00000015085.9	novel	1935	9	NA	NA	8	-9	intron_retention	FALSE	canonical	1	2	junction_1	1.64130361329658	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGAGCAGTGAAGTGTCC	NA	False	NA	NA	False	AATAAA	-10	NA	25285893	25291324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_25286102_25287407_25287526_25288012_25288164_25288302_25288463_25288543_25288772_25289293_25289749_25290575_25290711_25290781
ENSMUSG00000015085.9_2	chr2	+	1875	9	FSM	ENSMUSG00000015085.9	ENSMUST00000028328.3	1935	9	53	7	11	-7	multi-exon	FALSE	canonical	1	2	junction_1	1.69096865730859	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGCAGTGAAGTGTCCAT	NA	False	NA	NA	False	AATAAA	-12	NA	25285938	25291326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25286102_25287407_25287526_25288012_25288164_25288302_25288463_25288543_25288772_25289293_25289549_25289628_25289749_25290575_25290711_25290781
ENSMUSG00000015087.15_0	chr2	-	3172	15	FSM	ENSMUSG00000015087.15	ENSMUST00000058137.9	3230	15	57	1	1	-1	multi-exon	FALSE	canonical	3	258	junction_7	28.5093074669466	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGGTGTGTGACTCTTT	3275	False	NA	-7	True	CATAAA	-14	NA	25498476	25473030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25474001_25474114_25474174_25474787_25474957_25475319_25475549_25475635_25475846_25476879_25477031_25477286_25477640_25478620_25478725_25482309_25482416_25482778_25482920_25486444_25486537_25488156_25488210_25491362_25491411_25492432_25492568_25498124
ENSMUSG00000015090.14_0	chr2	-	769	7	FSM	ENSMUSG00000015090.14	ENSMUST00000114259.3	775	7	3	3	3	0	multi-exon	FALSE	canonical	0	0	junction_1	3.71558280160133	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTTTGCTTTTGTCTGT	5895	False	NA	-2	True	AATAAA	-16	NA	25359758	25356723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25356844_25357331_25357358_25357829_25357932_25358083_25358201_25358844_25358922_25358999_25359140_25359571
ENSMUSG00000015092.10_0	chr2	+	692	5	FSM	ENSMUSG00000015092.10	ENSMUST00000015236.4	722	5	23	7	-1	-7	multi-exon	FALSE	canonical	3	2396	junction_4	232.166965781095	590	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGATAGCCTCCTGGAT	NA	False	NA	10	True	NA	NA	NA	25447881	25452087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980_25451075_25451862
ENSMUSG00000015094.17_1	chr2	+	1477	9	FSM	ENSMUSG00000015094.17	ENSMUST00000071442.12	1485	9	5	3	5	0	multi-exon	FALSE	canonical	3	17	junction_4	4.24264068711928	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGCTTCTGGGTTCAC	3131	False	NA	9	True	ATTAAA	-17	NA	25293087	25299503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25293378_25296226_25296374_25297607_25297749_25297852_25298027_25298125_25298193_25298271_25298360_25298618_25298699_25298916_25299014_25299110
ENSMUSG00000015095.13_0	chr2	+	2125	8	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	-11	-7	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	82.0069683450306	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCACATGCCATCTAGT	NA	False	NA	9	True	AATAAA	-9	NA	25390859	25395476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_25390899_25391947_25392164_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
ENSMUSG00000015095.13_1	chr2	+	3332	8	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	-11	-7	intron_retention	FALSE	canonical	3	227	junction_5	21.7649784220956	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCACATGCCATCTAGT	NA	False	NA	9	True	AATAAA	-9	NA	25390859	25395476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
ENSMUSG00000015095.13_13	chr2	+	2298	9	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	-12	-7	combination_of_known_junctions	FALSE	canonical	3	26	junction_3	79.815314163386	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCACATGCCATCTAGT	NA	False	NA	9	True	AATAAA	-9	NA	25390858	25395476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_25390899_25391947_25392164_25392412_25392571_25392868_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
ENSMUSG00000015095.13_2	chr2	+	2284	9	FSM	ENSMUSG00000015095.13	ENSMUST00000015239.10	2388	9	97	7	-12	-7	multi-exon	FALSE	canonical	3	164	junction_1	35.5176012703561	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCACATGCCATCTAGT	NA	False	NA	9	True	AATAAA	-9	NA	25390858	25395476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
ENSMUSG00000015095.13_7	chr2	+	3650	7	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	-12	-3	intron_retention	FALSE	canonical	3	231	junction_2	20.763884243775	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACATGCCATCTAGTCTGT	NA	False	NA	13	True	AATAAA	-13	NA	25390858	25395480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25394340_25394428_25394642_25394721
ENSMUSG00000015112.16_2	chr6	-	3079	18	NNC	ENSMUSG00000015112.16	novel	3121	18	NA	NA	-22	-6	at_least_one_novel_splicesite	FALSE	canonical	3	590	junction_13	48.4240210344906	767	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTATTGATTGCTTGCT	-2	True	NA	-10	True	AATAAA	-9	NA	6217140	6041224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
ENSMUSG00000015112.16_3	chr6	-	3078	18	FSM	ENSMUSG00000015112.16	ENSMUST00000015256.15	3067	18	-18	7	-18	-6	multi-exon	FALSE	canonical	3	190	junction_9	125.074538329783	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTATTGATTGCTTGCT	2	True	NA	-10	True	AATAAA	-9	NA	6217136	6041224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
ENSMUSG00000015120.16_0	chr17	-	1073	7	FSM	ENSMUSG00000015120.16	ENSMUST00000174031.8	824	7	138	-387	-13	2	multi-exon	FALSE	canonical	3	4214	junction_6	321.557148886477	2481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTTTTGTTGCATTAT	4734	False	NA	NA	False	AATAAA	-11	NA	25492370	25480892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492294
ENSMUSG00000015120.16_2	chr17	-	4385	6	NIC	ENSMUSG00000015120.16	novel	824	7	NA	NA	-13	2	intron_retention	FALSE	canonical	3	4214	junction_5	346.443068916092	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTTTTGTTGCATTAT	4734	False	NA	NA	False	AATAAA	-11	NA	25492370	25480892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_25481466_25483739_25483820_25484092_25487588_25488165_25488250_25488376_25488454_25492294
ENSMUSG00000015120.16_3	chr17	-	1143	7	NIC	ENSMUSG00000015120.16	novel	1138	7	NA	NA	-26	-2	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTTTTGTTGCATTATC	4504	False	NA	NA	False	AATAAA	-12	NA	25492600	25480891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
ENSMUSG00000015120.16_6	chr17	-	1129	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	17	-256	9	2	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTTTTGTTGCATTAT	3837	False	NA	NA	False	AATAAA	-11	NA	25493267	25480892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
ENSMUSG00000015126.10_0	chr17	+	1160	6	FSM	ENSMUSG00000015126.10	ENSMUST00000063574.7	1192	6	29	3	29	-3	multi-exon	FALSE	canonical	3	375	junction_2	34.9685573050991	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATGGGTTGCTTTGTACG	4632	False	NA	25	True	AATAAA	-15	NA	25459172	25461769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25459339_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000015126.10_11	chr17	+	1647	4	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	23	-1	intron_retention	FALSE	canonical	3	415	junction_1	23.4426012966897	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGTTGCTTTGTACGTG	4626	False	NA	27	True	AATAAA	-17	NA	25459166	25461771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000015126.10_2	chr17	+	923	5	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	44	-5	combination_of_known_splicesites	FALSE	canonical	2	14	junction_1	185.290312752718	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTATGGGTTGCTTTGTA	4647	False	NA	23	True	AATAAA	-13	NA	25459187	25461767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25459339_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000015126.10_5	chr17	+	1567	5	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	23	-2	intron_retention	FALSE	canonical	3	382	junction_1	32.0702354216492	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGGTTGCTTTGTACGT	4626	False	NA	26	True	AATAAA	-16	NA	25459166	25461770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25459339_25459417_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000015126.10_9	chr17	+	1203	5	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	66	-2	intron_retention	FALSE	canonical	3	375	junction_1	34.4700957352892	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGGTTGCTTTGTACGT	4669	False	NA	26	True	AATAAA	-16	NA	25459209	25461770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000015127.15_0	chr17	+	4552	14	NIC	ENSMUSG00000015127.15	novel	4779	15	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	2	5	junction_11	15.8737623568248	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTCTGGATCTTTGG	NA	False	NA	1	True	ATTAAA	-13	NA	25407367	25453415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25407467_25408439_25408650_25418740_25418918_25420015_25420150_25424572_25424709_25427062_25427181_25428527_25428613_25429777_25429861_25432020_25432081_25437551_25437730_25447556_25447641_25449180_25449384_25449494_25449750_25450685
ENSMUSG00000015127.15_2	chr17	+	4781	15	FSM	ENSMUSG00000015127.15	ENSMUST00000039734.12	4779	15	-3	1	-3	0	multi-exon	FALSE	canonical	3	27	junction_1	11.8347464903054	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTCTGGATCTTTGGG	NA	False	NA	2	True	ATTAAA	-14	NA	25407367	25453416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25407467_25408439_25408650_25418740_25418918_25420015_25420150_25424572_25424709_25427062_25427181_25428527_25428613_25429777_25429861_25432020_25432081_25437551_25437730_25447556_25447641_25448212_25448441_25449180_25449384_25449494_25449750_25450685
ENSMUSG00000015127.15_33	chr17	+	3572	5	FSM	ENSMUSG00000015127.15	ENSMUST00000015271.12	3414	5	-160	2	-117	-2	multi-exon	FALSE	canonical	2	5	junction_2	29.3459963197708	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTGTCTGGATCTTTG	NA	False	NA	0	True	ATTAAA	-12	NA	25441395	25453414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25441697_25447556_25447641_25449180_25449384_25449494_25449750_25450685
ENSMUSG00000015127.15_34	chr17	+	3821	6	NIC	ENSMUSG00000015127.15	novel	3414	5	NA	NA	-137	-1	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	22.1954950384081	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTCTGGATCTTTGG	NA	False	NA	1	True	ATTAAA	-13	NA	25441375	25453415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25441697_25447556_25447641_25448212_25448441_25449180_25449384_25449494_25449750_25450685
ENSMUSG00000015133.18_0	chr7	-	7436	34	FSM	ENSMUSG00000015133.18	ENSMUST00000015277.14	7465	34	25	4	-18	3	multi-exon	TRUE	canonical	0	0	junction_2	1.04797675550246	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACATGGCCTTTGTCTCT	NA	False	NA	NA	False	AATAAA	-13	NA	66038073	65908496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_65909842_65911485_65911588_65911793_65912645_65915172_65915290_65916238_65916357_65919485_65919638_65920474_65920670_65922564_65922843_65924523_65924722_65928270_65928438_65928941_65929192_65931375_65931516_65931921_65932086_65934982_65935155_65937187_65937465_65938831_65938992_65939360_65939482_65940475_65940649_65942004_65942170_65944541_65944757_65945160_65945274_65945868_65945999_65950609_65950687_65952402_65952516_65955140_65955279_65956592_65956757_65956852_65956981_65958408_65958636_65980416_65980566_65982026_65982207_65982862_65983035_65992509_65992674_66031199_66031415_66037967
ENSMUSG00000015134.16_1	chr7	-	3395	13	FSM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	42	6	42	-6	multi-exon	FALSE	canonical	3	10	junction_1	4.11214326382511	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACATTGATTGTTTTTCA	NA	False	NA	-6	True	AATAAA	-13	NA	66077223	66040643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_66042510_66048435_66048511_66049825_66049984_66051718_66051884_66055721_66055907_66057548_66057652_66058913_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
ENSMUSG00000015134.16_3	chr7	-	2436	5	ISM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	21371	7	-144	-7	3prime_fragment	FALSE	canonical	3	10	junction_1	3.53553390593274	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACATTGATTGTTTTTC	NA	False	NA	-7	True	AATAAA	-12	NA	66055894	66040644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_66042510_66048435_66048511_66049825_66049984_66051718_66051884_66055721
ENSMUSG00000015134.16_4	chr7	-	176	1	ISM	ENSMUSG00000015134.16	ENSMUST00000174209.8	1496	7	17892	11	-2695	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATTAGACTCT	NA	False	NA	NA	False	NA	NA	NA	66058445	66058269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_66058300_66058400
ENSMUSG00000015134.16_5	chr7	-	1487	7	ISM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	42	17632	42	-11	5prime_fragment	FALSE	canonical	3	14	junction_3	2.80871659105879	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATTAGACTCT	NA	False	NA	NA	False	NA	NA	NA	66077223	66058269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
ENSMUSG00000015143.16_0	chr12	-	3679	21	FSM	ENSMUSG00000015143.16	ENSMUST00000021554.16	3734	21	10	45	10	-45	multi-exon	TRUE	canonical	3	154	junction_2	44.8659113358906	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGTTGCTTGGCACAGA	NA	False	NA	-3	True	ATTAAA	-22	NA	80307135	80214365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_80215255_80215631_80215791_80217459_80217541_80218502_80218650_80219736_80219917_80220853_80220989_80221233_80221417_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166_80230398_80231580_80231674_80239141_80239228_80240409_80240492_80243168_80243248_80243699_80243788_80245754_80245842_80251735_80251856_80256132_80256248_80306760
ENSMUSG00000015143.16_21	chr12	-	404	1	ISM	ENSMUSG00000015143.16	ENSMUST00000021554.16	3734	21	92418	3	2198	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACATTACTTTGCTTGTTC	6429	False	NA	-8	True	ATTAAA	-13	NA	80214727	80214323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_80214300_80214700
ENSMUSG00000015143.16_3	chr12	-	3658	21	FSM	ENSMUSG00000015143.16	ENSMUST00000167327.2	2664	21	-270	-724	10	-51	multi-exon	FALSE	canonical	3	172	junction_3	39.4366263770115	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTATGATGTTGCTTGG	NA	False	NA	-9	True	ATTAAA	-16	NA	80307135	80214371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_80215255_80215631_80215791_80216956_80217023_80218502_80218650_80219736_80219917_80220853_80220989_80221233_80221417_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166_80230398_80231580_80231674_80239141_80239228_80240409_80240492_80243168_80243248_80243699_80243788_80245754_80245842_80251735_80251856_80256132_80256248_80306760
ENSMUSG00000015149.15_0	chr7	+	1731	16	NNC	ENSMUSG00000015149.15	novel	1843	16	NA	NA	10	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	27.6903513079115	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAACAAAGCAAC	NA	False	NA	-11	True	NA	NA	NA	28466201	28488062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_28466293_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341_28487683_28487714
ENSMUSG00000015149.15_1	chr7	+	1763	15	FSM	ENSMUSG00000015149.15	ENSMUST00000122915.8	1828	15	37	28	5	-28	multi-exon	FALSE	canonical	3	61	junction_1	14.0365775815931	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATTAAAAAACAAAACAAA	NA	False	NA	-16	True	NA	NA	NA	28466196	28488057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28466293_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
ENSMUSG00000015149.15_14	chr7	+	1622	12	ISM	ENSMUSG00000015149.15	ENSMUST00000170068.9	1585	13	9929	24	-113	-23	3prime_fragment	FALSE	canonical	3	90	junction_1	8.12708968677346	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAACAAAGCAAC	8269	False	NA	-11	True	NA	NA	NA	28476169	28488062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
ENSMUSG00000015149.15_17	chr7	+	1218	8	ISM	ENSMUSG00000015149.15	ENSMUST00000170068.9	1585	13	15969	24	-1841	-23	3prime_fragment	FALSE	canonical	3	91	junction_7	8.47565541382362	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAACAAAGCAAC	NA	False	NA	-11	True	NA	NA	NA	28482209	28488062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
ENSMUSG00000015149.15_3	chr7	+	1798	16	FSM	ENSMUSG00000015149.15	ENSMUST00000072965.5	1843	16	22	23	22	-23	multi-exon	FALSE	canonical	3	18	junction_1	28.236776649532	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAACAAAGCAAC	NA	False	NA	-11	True	NA	NA	NA	28466213	28488062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28466293_28467056_28467104_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
ENSMUSG00000015149.15_5	chr7	+	1775	17	NNC	ENSMUSG00000015149.15	novel	1843	16	NA	NA	13	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	34.8280934555712	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAACAAAGCAAC	NA	False	NA	-11	True	NA	NA	NA	28466204	28488062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_28466293_28467056_28467104_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341_28487683_28487714
ENSMUSG00000015165.17_5	chr7	+	2068	13	FSM	ENSMUSG00000015165.17	ENSMUST00000038572.15	2142	13	48	26	1	0	multi-exon	FALSE	canonical	3	4757	junction_8	508.744178235868	4804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAACTATTTGCTGG	NA	False	NA	7	True	AATAAA	-10	NA	28510362	28521665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
ENSMUSG00000015165.17_8	chr7	+	2179	12	FSM	ENSMUSG00000015165.17	ENSMUST00000174477.8	2180	12	1	0	1	0	multi-exon	FALSE	canonical	3	4757	junction_7	501.59715158615	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAACTATTTGCTGG	NA	False	NA	7	True	AATAAA	-10	NA	28510362	28521665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
ENSMUSG00000015176.12_0	chr19	+	2508	13	FSM	ENSMUSG00000015176.12	ENSMUST00000235620.2	2441	13	-5	-62	-5	62	multi-exon	FALSE	canonical	0	0	junction_11	313.587042674491	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAAACAACACATGGT	-1	True	NA	17	True	ATTAAA	-22	NA	46064422	46072962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ENSMUSG00000015176.12_1	chr19	+	2502	13	FSM	ENSMUSG00000015176.12	ENSMUST00000223728.2	3523	13	14	1007	-5	62	multi-exon	FALSE	canonical	0	0	junction_11	265.145819419344	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAAACAACACATGGT	-1	True	NA	17	True	ATTAAA	-22	NA	46064422	46072962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ENSMUSG00000015176.12_10	chr19	+	2510	13	FSM	ENSMUSG00000015176.12	ENSMUST00000225780.2	2978	13	38	430	9	62	multi-exon	FALSE	canonical	0	0	junction_11	314.758494281286	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAAACAACACATGGT	253	False	NA	17	True	ATTAAA	-22	NA	46064417	46072962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ENSMUSG00000015176.12_7	chr19	+	2505	13	NIC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	-5	62	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	263.476899156053	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAAACAACACATGGT	-1	True	NA	17	True	ATTAAA	-22	NA	46064422	46072962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ENSMUSG00000015189.13_0	chr6	+	3839	18	FSM	ENSMUSG00000015189.13	ENSMUST00000015333.12	3961	18	112	10	2	-10	multi-exon	TRUE	canonical	3	22	junction_3	9.97574914150592	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATCAAGCCATGTGTG	23	True	NA	20	True	AATAAA	-31	NA	4600950	4643345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_4601302_4607982_4608080_4608633_4608755_4613234_4613280_4614648_4614712_4619288_4619334_4619760_4619885_4621071_4621287_4624051_4624475_4625465_4625556_4629961_4630082_4631007_4631165_4631518_4631599_4634001_4634104_4635745_4635887_4636968_4637047_4640914_4641008_4641851
ENSMUSG00000015202.14_0	chr10	-	3423	13	FSM	ENSMUSG00000015202.14	ENSMUST00000015346.12	3447	13	21	3	21	-3	multi-exon	FALSE	canonical	3	41	junction_10	5.32812245438193	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATTTGGGATTTTATGA	NA	False	NA	-7	True	AATAAA	-8	NA	7162216	7069065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_7070587_7076094_7076185_7076634_7076844_7079022_7079148_7084521_7084669_7085047_7085117_7088354_7088415_7090318_7090439_7092960_7093003_7102863_7102952_7104282_7104486_7110643_7110808_7161631
ENSMUSG00000015202.14_2	chr10	-	1041	1	ISM	ENSMUSG00000015202.14	ENSMUST00000150282.2	2554	6	15400	3	15400	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATTTGGGATTTTATGA	NA	False	NA	-7	True	AATAAA	-8	NA	7070106	7069065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_7069100_7070100
ENSMUSG00000015202.14_7	chr10	-	2012	5	ISM	ENSMUSG00000015202.14	ENSMUST00000150282.2	2554	6	916	5	916	-5	3prime_fragment	FALSE	canonical	3	42	junction_2	7.08872343937891	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCATTTGGGATTTTAT	NA	False	NA	-9	True	AATAAA	-6	NA	7084590	7069067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_7070587_7076094_7076185_7076634_7076844_7079022_7079148_7084521
ENSMUSG00000015214.15_0	chrX	+	4623	15	FSM	ENSMUSG00000015214.15	ENSMUST00000015358.8	4634	15	4	7	4	-7	multi-exon	FALSE	canonical	3	55	junction_13	10.0440356959354	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGGTCTCTGTTGTCTC	NA	False	NA	4	True	ACTAAA	-17	NA	70408369	70462795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_70408679_70413404_70413511_70426805_70426882_70431828_70431924_70432258_70432367_70435295_70435398_70436121_70436206_70436901_70437052_70437882_70438072_70444146_70444333_70445333_70445541_70448477_70448571_70454338_70454453_70455810_70455988_70460168
ENSMUSG00000015214.15_18	chrX	+	2133	1	ISM	ENSMUSG00000015214.15	ENSMUST00000114601.8	4640	15	52297	7	23066	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGGTCTCTGTTGTCTC	NA	False	NA	4	True	ACTAAA	-17	NA	70460662	70462795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_70460700_70462800
ENSMUSG00000015214.15_2	chrX	+	4467	14	NIC	ENSMUSG00000015214.15	novel	4634	15	NA	NA	9	-8	combination_of_known_splicesites	FALSE	canonical	3	18	junction_7	19.0688568554895	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTGGTCTCTGTTGTCT	NA	False	NA	3	True	ACTAAA	-16	NA	70408374	70462794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_70408679_70413404_70413511_70426805_70426882_70431828_70431924_70432258_70432367_70435295_70435398_70436121_70436206_70437882_70438072_70444146_70444333_70445333_70445541_70448477_70448571_70454338_70454453_70455810_70455988_70460168
ENSMUSG00000015217.12_0	chrX	+	1517	5	FSM	ENSMUSG00000015217.12	ENSMUST00000072699.13	1571	5	25	29	2	-29	multi-exon	FALSE	canonical	3	598	junction_1	126.240593708997	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGTTCTGTATTACAA	NA	False	NA	NA	False	AATAAA	-16	NA	70599548	70604253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_70599615_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUSG00000015217.12_17	chrX	+	1454	4	FSM	ENSMUSG00000015217.12	ENSMUST00000132145.2	847	4	267	-874	267	-29	multi-exon	FALSE	canonical	3	753	junction_3	86.723058576649	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGTTCTGTATTACAA	NA	False	NA	NA	False	AATAAA	-16	NA	70601655	70604253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUSG00000015217.12_7	chrX	+	1643	5	FSM	ENSMUSG00000015217.12	ENSMUST00000114582.9	1743	5	71	29	9	-29	multi-exon	FALSE	canonical	3	153	junction_1	303.596360320739	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGTTCTGTATTACAA	NA	False	NA	NA	False	AATAAA	-16	NA	70599604	70604253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUSG00000015222.19_0	chr1	+	5479	14	NIC	ENSMUSG00000015222.19	novel	4981	15	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	4.07909956417318	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTACAAGTTTCAGATTT	NA	False	NA	13	True	AATAAA	-14	NA	66214462	66481739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_66214655_66290820_66290872_66361562_66361628_66401361_66401440_66419647_66419933_66438547_66438662_66440602_66440681_66459293_66459356_66460804_66460950_66464355_66464688_66470685_66470779_66472672_66472755_66477412_66477526_66477950
ENSMUSG00000015222.19_15	chr1	+	4309	10	NIC	ENSMUSG00000015222.19	novel	5440	14	NA	NA	-14	2926	combination_of_known_junctions	FALSE	canonical	3	15	junction_7	3.69517536629242	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATTTTAAATTGAAACT	NA	False	NA	NA	False	AGTAAA	-41	NA	66214457	66467589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_66214655_66290820_66290872_66361562_66361628_66401361_66401440_66419647_66419933_66438547_66438662_66440602_66440681_66459293_66459356_66460804_66460950_66464355
ENSMUSG00000015222.19_3	chr1	+	5470	14	NIC	ENSMUSG00000015222.19	novel	4981	15	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	6.5098923358879	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTACAAGTTTCAGATTT	NA	False	NA	13	True	AATAAA	-14	NA	66214468	66481739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_66214655_66290820_66290872_66361562_66361628_66401361_66401440_66419647_66419933_66438547_66438662_66440602_66440681_66459296_66459356_66460804_66460950_66464355_66464688_66470685_66470779_66472672_66472755_66477412_66477526_66477950
ENSMUSG00000015222.19_4	chr1	+	5521	15	FSM	ENSMUSG00000015222.19	ENSMUST00000114017.8	4981	15	9	-549	6	-4	multi-exon	FALSE	canonical	2	3	junction_1	6.25846365707581	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTAACTACAAGTTTCAGA	NA	False	NA	10	True	AATAAA	-11	NA	66214480	66481736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_66214655_66232277_66232341_66290820_66290872_66361562_66361628_66401361_66401440_66419647_66419933_66438547_66438662_66440602_66440681_66459293_66459356_66460804_66460950_66464355_66464688_66470685_66470779_66472672_66472755_66477412_66477526_66477950
ENSMUSG00000015222.19_6	chr1	+	2489	1	ISM	ENSMUSG00000015222.19	ENSMUST00000114015.8	5440	14	264777	2	6518	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACAAGTTTCAGATTTT	7182	False	NA	14	True	AATAAA	-15	NA	66479251	66481740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_66479300_66481700
ENSMUSG00000015243.5_0	chr4	-	10140	50	FSM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	3	119	3	-119	multi-exon	FALSE	canonical	2	9	junction_41	9.14791223225713	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAAAACTGAAA	0	True	NA	NA	False	NA	NA	NA	53159892	53030905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313_53042435_53042663_53042794_53044114_53044239_53045774_53045920_53046029_53046146_53048955_53049134_53050288_53050459_53050934_53051010_53059256_53059363_53060332_53060366_53061486_53061582_53062389_53062580_53065900_53066000_53067030_53067156_53068686_53068836_53069791_53069906_53070075_53070125_53071822_53072026_53072897_53072971_53074219_53074441_53075130_53075269_53075446_53075590_53076890_53077023_53077942_53078115_53079570_53079685_53080765_53080971_53081921_53082144_53083716_53083940_53084383_53084561_53085095_53085302_53085992_53086191_53089798_53089916_53090253_53090394_53092728_53092970_53095584_53095678_53107005_53107183_53109163_53109286_53127596_53127716_53128720_53128863_53132921_53133016_53143929_53144096_53159675
ENSMUSG00000015243.5_1	chr4	-	2339	1	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	126651	119	7682	-119	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAAAACTGAAA	514	False	NA	NA	False	NA	NA	NA	53033244	53030905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_53030900_53033200
ENSMUSG00000015243.5_11	chr4	-	5479	17	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	100302	102	-18667	-102	3prime_fragment	FALSE	canonical	3	18	junction_11	8.07557080025926	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTGTATTGTGAAT	6197	False	NA	-105	True	ATTAAA	-15	NA	53059593	53030888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313_53042435_53042663_53042794_53044114_53044239_53045774_53045920_53046029_53046146_53048955_53049134_53050288_53050459_53050934_53051010_53059256
ENSMUSG00000015243.5_12	chr4	-	4589	12	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	114077	15	-4892	-15	3prime_fragment	FALSE	canonical	3	18	junction_11	9.37554406134817	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTGCTGGTCTACACAA	NA	False	NA	-18	True	AATAAA	-9	NA	53045818	53030801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313_53042435_53042663_53042794_53044114_53044239_53045774
ENSMUSG00000015243.5_15	chr4	-	5798	23	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	91184	119	-27785	-119	3prime_fragment	FALSE	canonical	3	17	junction_22	8.47273214982302	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAAAACTGAAA	NA	False	NA	NA	False	NA	NA	NA	53068711	53030905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313_53042435_53042663_53042794_53044114_53044239_53045774_53045920_53046029_53046146_53048955_53049134_53050288_53050459_53050934_53051010_53059256_53059363_53060332_53060366_53061486_53061582_53062389_53062580_53065900_53066000_53067030_53067156_53068686
ENSMUSG00000015243.5_17	chr4	-	6824	29	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	84632	10	-34337	-10	3prime_fragment	FALSE	canonical	3	15	junction_25	9.35741548130657	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGGTCTACACAAAGTTC	NA	False	NA	-13	True	AATAAA	-14	NA	53075263	53030796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313_53042435_53042663_53042794_53044114_53044239_53045774_53045920_53046029_53046146_53048955_53049134_53050288_53050459_53050934_53051010_53059256_53059363_53060332_53060366_53061486_53061582_53062389_53062580_53065900_53066000_53067030_53067156_53068686_53068836_53069791_53069906_53070075_53070125_53071822_53072026_53072897_53072971_53074219_53074441_53075130
ENSMUSG00000015243.5_2	chr4	-	5823	22	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	92794	15	-26175	-15	3prime_fragment	FALSE	canonical	3	18	junction_11	8.12348014740083	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTGCTGGTCTACACAA	NA	False	NA	-18	True	AATAAA	-9	NA	53067101	53030801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313_53042435_53042663_53042794_53044114_53044239_53045774_53045920_53046029_53046146_53048955_53049134_53050288_53050459_53050934_53051010_53059256_53059363_53060332_53060366_53061486_53061582_53062389_53062580_53065900_53066000_53067030
ENSMUSG00000015243.5_25	chr4	-	4804	14	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	110872	85	-8097	-85	3prime_fragment	FALSE	canonical	3	18	junction_11	8.7137244667731	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACTTTATATGACGTGT	9344	False	NA	-88	True	ATTAAA	-32	NA	53049023	53030871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313_53042435_53042663_53042794_53044114_53044239_53045774_53045920_53046029_53046146_53048955
ENSMUSG00000015243.5_3	chr4	-	3835	5	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	121631	11	2662	-11	3prime_fragment	FALSE	canonical	3	26	junction_2	5.3851648071345	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGGTCTACACAAAGTT	5028	False	NA	-14	True	AATAAA	-13	NA	53038264	53030797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156
ENSMUSG00000015243.5_4	chr4	-	5237	16	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	108882	11	-10087	-11	3prime_fragment	FALSE	canonical	3	18	junction_11	8.28224338905562	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGGTCTACACAAAGTT	8201	False	NA	-14	True	AATAAA	-13	NA	53051013	53030797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313_53042435_53042663_53042794_53044114_53044239_53045774_53045920_53046029_53046146_53048955_53049134_53050288_53050459_53050934
ENSMUSG00000015243.5_8	chr4	-	7799	35	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	77768	12	-41201	-12	3prime_fragment	FALSE	canonical	3	15	junction_25	8.9744446869679	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCTGGTCTACACAAAGT	NA	False	NA	-15	True	AATAAA	-12	NA	53082127	53030798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313_53042435_53042663_53042794_53044114_53044239_53045774_53045920_53046029_53046146_53048955_53049134_53050288_53050459_53050934_53051010_53059256_53059363_53060332_53060366_53061486_53061582_53062389_53062580_53065900_53066000_53067030_53067156_53068686_53068836_53069791_53069906_53070075_53070125_53071822_53072026_53072897_53072971_53074219_53074441_53075130_53075269_53075446_53075590_53076890_53077023_53077942_53078115_53079570_53079685_53080765_53080971_53081921
ENSMUSG00000015247.11_0	chr4	+	1492	6	FSM	ENSMUSG00000015247.11	ENSMUST00000015391.10	1552	6	53	7	-17	-7	multi-exon	FALSE	canonical	3	527	junction_3	32.5785205311721	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGATTTTTTATCAAGT	-15	True	NA	3	True	AATAAA	-14	NA	53011932	53022053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53020181_53020332_53021110_53021198_53021283
ENSMUSG00000015247.11_6	chr4	+	1343	5	FSM	ENSMUSG00000015247.11	ENSMUST00000107665.4	848	5	-20	-475	-20	-9	multi-exon	FALSE	canonical	3	19	junction_3	242.862615484557	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCTGATTTTTTATCAA	-18	True	NA	1	True	AATAAA	-12	NA	53011929	53022051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53021110_53021198_53021283
ENSMUSG00000015289.5_1	chrX	-	729	3	FSM	ENSMUSG00000015289.5	ENSMUST00000015433.4	761	3	21	11	-3	-10	multi-exon	FALSE	canonical	3	1433	junction_2	31	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGAGCTTATTTTCAGCC	4514	False	NA	-29	True	AATAAA	-19	NA	73397203	73395777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73396105_73396479_73396609_73396930
ENSMUSG00000015289.5_2	chrX	-	755	3	FSM	ENSMUSG00000015289.5	ENSMUST00000114152.2	746	3	-21	12	-2	-12	multi-exon	FALSE	canonical	3	109	junction_1	662	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTGAGCTTATTTTCAG	4515	False	NA	-31	True	AATAAA	-17	NA	73397202	73395779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73396105_73396450_73396609_73396930
ENSMUSG00000015289.5_4	chrX	-	1101	2	FSM	ENSMUSG00000015289.5	ENSMUST00000114153.2	1997	2	0	896	0	-10	multi-exon	FALSE	canonical	3	1433	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGAGCTTATTTTCAGCC	4517	False	NA	-29	True	AATAAA	-19	NA	73397200	73395777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73396609_73396930
ENSMUSG00000015290.16_1	chrX	-	2287	4	FSM	ENSMUSG00000015290.16	ENSMUST00000155676.8	2442	4	147	8	-13	-7	multi-exon	FALSE	canonical	3	1598	junction_1	83.5636816379513	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGTCAGAACTGAATCCT	NA	False	NA	-14	True	AATAAA	-12	NA	73412132	73409331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73411193_73411306_73411516_73411758_73411865_73412021
ENSMUSG00000015290.16_12	chrX	-	1944	3	FSM	ENSMUSG00000032806.14	ENSMUST00000037967.6	2023	3	53	26	9	-26	multi-exon	FALSE	canonical	3	11	junction_2	8.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAACCAAAAAA	NA	False	NA	NA	False	AATATA	-5	NA	73416902	73412848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73414618_73416219_73416289_73416796
ENSMUSG00000015290.16_3	chrX	-	1722	1	ISM	ENSMUSG00000015290.16	ENSMUST00000155676.8	2442	4	1233	1	1026	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTGAATCCTGTGTAAT	NA	False	NA	-7	True	AATAAA	-19	NA	73411046	73409324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_73409300_73411000
ENSMUSG00000015290.16_4	chrX	-	2188	3	FSM	ENSMUSG00000015290.16	ENSMUST00000126117.2	2220	3	32	0	-13	0	multi-exon	FALSE	canonical	3	33	junction_2	782.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTGAATCCTGTGTAAT	NA	False	NA	-7	True	AATAAA	-19	NA	73412132	73409324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73411193_73411306_73411516_73412021
ENSMUSG00000015290.16_7	chrX	-	2006	2	ISM	ENSMUSG00000015290.16	ENSMUST00000126117.2	2220	3	717	3	625	-3	3prime_fragment	FALSE	canonical	3	1598	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGAACTGAATCCTGTGT	NA	False	NA	-10	True	AATAAA	-16	NA	73411447	73409327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_73411193_73411306
ENSMUSG00000015291.11_0	chrX	+	2666	10	NIC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	-1	0	intron_retention	FALSE	canonical	3	728	junction_6	47.3648825477846	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGGCTCTTTAGGTTC	6205	False	NA	13	True	AATAAA	-14	NA	73348860	73355466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
ENSMUSG00000015291.11_1	chrX	+	2403	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	258	5	0	-1	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAAGCCTGGCTCTTTAGG	6206	False	NA	10	True	AATAAA	-11	NA	73348861	73355463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
ENSMUSG00000015291.11_3	chrX	+	3452	9	FSM	ENSMUSG00000015291.11	ENSMUST00000146013.8	3696	9	244	0	0	0	multi-exon	FALSE	canonical	3	736	junction_5	44.1572120383522	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGGCTCTTTAGGTTC	6206	False	NA	13	True	AATAAA	-14	NA	73348861	73355466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73353741_73353995_73354141_73354243_73354299_73354392
ENSMUSG00000015305.7_0	chr10	-	7149	20	FSM	ENSMUSG00000015305.7	ENSMUST00000015449.6	7183	20	33	1	15	-1	multi-exon	FALSE	canonical	1	3	junction_11	2.30139064306057	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTGTTTCTCTGGTTGT	816	False	NA	-10	True	AATAAA	-12	NA	8761781	8597983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_8601525_8603621_8603754_8605091_8606201_8609359_8609474_8615084_8615236_8615937_8616148_8617191_8617362_8618191_8618328_8620251_8620396_8621879_8621955_8626902_8627250_8632392_8632526_8656282_8656385_8659961_8660075_8662111_8662199_8665324_8665366_8690004_8690055_8690170_8690222_8726106_8726236_8761467
ENSMUSG00000015305.7_2	chr10	-	1608	1	ISM	ENSMUSG00000015305.7	ENSMUST00000015449.6	7183	20	162224	0	32935	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGTTTCTCTGGTTGTT	NA	False	NA	-9	True	AATAAA	-13	NA	8599590	8597982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_8598000_8599600
ENSMUSG00000015312.10_0	chr10	+	1282	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	1	1	1	-1	multi-exon	FALSE	canonical	3	88	junction_3	10.2089285540757	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGTTCTCGTTGTATTTT	249	False	NA	4	True	AATAAA	-13	NA	80765907	80768037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
ENSMUSG00000015312.10_1	chr10	+	1417	2	FSM	ENSMUSG00000015312.10	ENSMUST00000219449.2	667	2	-307	-443	-307	-2	multi-exon	FALSE	canonical	3	88	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTGTTCTCGTTGTATTT	680	False	NA	3	True	AATAAA	-12	NA	80766338	80768036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80767086_80767366
ENSMUSG00000015312.10_5	chr10	+	2124	1	NIC	ENSMUSG00000015312.10	novel	1284	4	NA	NA	1	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTTCGTGTTCTCGTTG	249	False	NA	-2	True	AATAAA	-7	NA	80765907	80768031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80765900_80768000
ENSMUSG00000015316.12_0	chr1	+	177	1	ISM	ENSMUSG00000015316.12	ENSMUST00000163992.3	4420	5	26061	2439	26061	-2439	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACAT	1553	False	NA	NA	False	NA	NA	NA	171620783	171620960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_171620800_171621000
ENSMUSG00000015335.17_0	chr2	-	1122	5	FSM	ENSMUSG00000015335.17	ENSMUST00000102865.11	1165	5	38	5	6	2	multi-exon	FALSE	canonical	3	614	junction_1	34.0917878674616	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCATGCTGCCGTGGACTC	NA	False	NA	-8	True	ATTAAA	-11	NA	29983622	29980960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983500
ENSMUSG00000015335.17_1	chr2	-	1161	5	FSM	ENSMUSG00000015335.17	ENSMUST00000081838.7	1187	5	28	-2	9	2	multi-exon	FALSE	canonical	3	80	junction_4	253.22754095872	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCATGCTGCCGTGGACTC	NA	False	NA	-8	True	ATTAAA	-11	NA	29983619	29980960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983458
ENSMUSG00000015335.17_11	chr2	-	2664	1	NIC	ENSMUSG00000015335.17	novel	1165	5	NA	NA	4	2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCATGCTGCCGTGGACTC	NA	False	NA	-8	True	ATTAAA	-11	NA	29983624	29980960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_29981000_29983600
ENSMUSG00000015335.17_3	chr2	-	1226	4	FSM	ENSMUSG00000015335.17	ENSMUST00000137001.2	846	4	5	-385	5	-2	multi-exon	FALSE	canonical	3	619	junction_3	30.9443945740671	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTGCCGTGGACTCTTT	NA	False	NA	-5	True	ATTAAA	-14	NA	29983623	29980957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_29981846_29981999_29982078_29982416_29982554_29983500
ENSMUSG00000015337.6_0	chr2	+	1013	3	FSM	ENSMUSG00000015337.6	ENSMUST00000015481.6	1063	3	20	30	20	-30	multi-exon	FALSE	canonical	3	314	junction_1	35	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAGACTTGACCATCTC	NA	False	NA	4	True	ATTAAA	-16	NA	30061524	30064051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30062079_30062853_30062964_30063702
ENSMUSG00000015337.6_1	chr2	+	1792	2	NIC	ENSMUSG00000015337.6	novel	1063	3	NA	NA	16	-30	intron_retention	FALSE	canonical	3	384	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAGACTTGACCATCTC	NA	False	NA	4	True	ATTAAA	-16	NA	30061520	30064051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_30062964_30063702
ENSMUSG00000015340.11_0	chrX	-	4742	14	NIC	ENSMUSG00000015340.11	novel	4752	13	NA	NA	-196	-243	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	1.59139698965978	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGAGCTTTCCCTGTGT	NA	False	NA	NA	False	ATTAAA	-20	NA	9354206	9301733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_9304583_9306133_9306259_9308771_9308919_9310786_9310950_9312931_9313186_9315879_9315973_9316920_9317051_9319824_9320016_9321372_9321519_9323198_9323284_9331882_9331994_9333321_9333418_9335444_9335544_9353953
ENSMUSG00000015341.18_0	chr8	-	1765	6	FSM	ENSMUSG00000015341.18	ENSMUST00000051094.9	1792	6	20	7	12	0	multi-exon	FALSE	canonical	3	715	junction_5	234.329170185873	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCCTCTCTTGTCT	NA	False	NA	-26	True	AGTAAA	-10	NA	23747070	23731368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689_23746823_23747035
ENSMUSG00000015341.18_4	chr8	-	1936	5	FSM	ENSMUSG00000015341.18	ENSMUST00000121783.7	1945	5	9	0	9	0	multi-exon	TRUE	canonical	3	1223	junction_2	41.2946727799119	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCCTCTCTTGTCT	NA	False	NA	-26	True	AGTAAA	-10	NA	23747028	23731368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689
ENSMUSG00000015342.7_1	chrX	+	5027	3	FSM	ENSMUSG00000015342.7	ENSMUST00000015486.7	5076	3	42	7	42	-7	multi-exon	FALSE	canonical	3	33	junction_2	9.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTCTCTTGCATTTTAT	NA	False	NA	2	True	AATAAA	-12	NA	9139036	9179482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_9139474_9148235_9148499_9175155
ENSMUSG00000015342.7_5	chrX	+	4427	2	ISM	ENSMUSG00000015342.7	ENSMUST00000015486.7	5076	3	9410	1	9410	-1	3prime_fragment	FALSE	canonical	3	33	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGCATTTTATTTCTTG	NA	False	NA	8	True	AATAAA	-18	NA	9148404	9179488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_9148499_9175155
ENSMUSG00000015342.7_6	chrX	+	2862	1	ISM	ENSMUSG00000015342.7	ENSMUST00000015486.7	5076	3	37631	2	37631	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCATTTTATTTCTT	NA	False	NA	7	True	AATAAA	-17	NA	9176625	9179487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_9176600_9179500
ENSMUSG00000015354.9_0	chr9	+	1749	9	FSM	ENSMUSG00000015354.9	ENSMUST00000015498.9	4438	9	139	2550	139	863	multi-exon	FALSE	canonical	3	281	junction_3	14.5982661641717	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATAAGGCAGCCAGATAA	8514	False	NA	NA	False	AATAAA	-13	NA	95519792	95577599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_95519927_95520704_95520814_95552057_95552314_95560397_95560523_95563585_95563723_95568738_95568894_95574913_95574998_95576676_95576845_95577018
ENSMUSG00000015357.11_0	chr9	+	2411	13	FSM	ENSMUSG00000015357.11	ENSMUST00000113824.8	2809	13	-1	399	-1	-398	multi-exon	FALSE	canonical	3	55	junction_5	89.4905333292609	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTGGGATCCCATTGTT	6185	False	NA	18	True	AATAAA	-14	NA	65201575	65237541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
ENSMUSG00000015357.11_1	chr9	+	2454	14	FSM	ENSMUSG00000015357.11	ENSMUST00000015501.11	2885	14	33	398	-2	-398	multi-exon	FALSE	canonical	3	317	junction_12	30.6779414999533	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTGGGATCCCATTGTT	6184	False	NA	18	True	AATAAA	-14	NA	65201574	65237541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65219379_65219422_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
ENSMUSG00000015363.14_0	chr15	+	2375	10	FSM	ENSMUSG00000015363.14	ENSMUST00000081702.12	2439	10	58	6	-1	0	multi-exon	FALSE	canonical	3	86	junction_1	6.70175948888899	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCCCGCTTTGTGAAGT	NA	False	NA	3	True	AATAAA	-13	NA	88960273	88971274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_88960345_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
ENSMUSG00000015363.14_15	chr15	+	2271	9	ISM	ENSMUSG00000015363.14	ENSMUST00000081702.12	2439	10	5000	6	-1516	0	3prime_fragment	FALSE	canonical	3	86	junction_7	6.36396103067893	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCCCGCTTTGTGAAGT	NA	False	NA	3	True	AATAAA	-13	NA	88965215	88971274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
ENSMUSG00000015363.14_3	chr15	+	2405	10	FSM	ENSMUSG00000015363.14	ENSMUST00000169870.8	2396	10	-9	0	-9	0	multi-exon	FALSE	canonical	3	5	junction_3	29.0546526309673	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCCCGCTTTGTGAAGT	NA	False	NA	3	True	AATAAA	-13	NA	88960265	88971274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_88960345_88965182_88965248_88965555_88965657_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
ENSMUSG00000015365.16_0	chr15	+	2019	11	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	-6	49485	-6	10592	5prime_fragment	TRUE	canonical	3	47	junction_4	7.62954782408499	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTGACACATGGTAAT	2901	False	NA	NA	False	AATAAA	-15	NA	88867105	88889866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454
ENSMUSG00000015365.16_1	chr15	+	4067	28	NNC	ENSMUSG00000015365.16	novel	4133	27	NA	NA	1	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	15.8574756379344	51	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCCTTTCTGTCTCAGA	2908	False	NA	1	True	AATAAA	-16	NA	88867112	88939352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899_88889971_88891784_88891877_88895565_88895625_88896102_88896209_88896274_88896399_88902352_88902453_88904463_88904643_88905366_88905514_88906203_88906326_88907815_88907916_88908869_88909035_88910665_88910840_88931009_88931160_88937580_88937689_88938429_88938568_88938713_88938834_88939018
ENSMUSG00000015365.16_3	chr15	+	2020	12	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	1	49210	1	10867	5prime_fragment	FALSE	canonical	3	47	junction_4	7.60382678775509	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTACTCGTAAGCCGTG	2908	False	NA	NA	False	AAAAAG	-21	NA	88867112	88890141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899
ENSMUSG00000015365.16_6	chr15	+	2460	14	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	0	43268	0	-11741	5prime_fragment	FALSE	canonical	3	36	junction_13	10.1817797586303	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTTCTTGTTTCAAAGT	2907	False	NA	NA	False	AATAAA	-12	NA	88867111	88896083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899_88889971_88891784_88891877_88895565
ENSMUSG00000015377.11_11	chr15	-	2282	20	NIC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	1	-1	intron_retention	FALSE	canonical	3	17	junction_19	26.5207805419452	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGGTCCCTGACTATTG	NA	False	NA	0	True	AGTAAA	-18	NA	89080667	89069015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89077137_89077322_89080421
ENSMUSG00000015377.11_12	chr15	-	2087	19	NIC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	6	0	intron_retention	FALSE	canonical	3	70	junction_7	13.724358808023	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACAGTCTGGTCCCTGA	NA	False	NA	-6	True	AGTAAA	-12	NA	89080662	89069021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
ENSMUSG00000015377.11_7	chr15	-	1991	20	FSM	ENSMUSG00000015377.11	ENSMUST00000078953.9	4585	20	-12	2606	5	0	multi-exon	FALSE	canonical	3	25	junction_9	20.4859251730037	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACAGTCTGGTCCCTGA	NA	False	NA	-6	True	AGTAAA	-12	NA	89080663	89069021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071254_89071350_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
ENSMUSG00000015377.11_9	chr15	-	1939	20	NIC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_9	23.4946802489415	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACAGTCTGGTCCCTGA	NA	False	NA	-6	True	AGTAAA	-12	NA	89080663	89069021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071202_89071350_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
ENSMUSG00000015396.5_0	chr13	+	2063	5	FSM	ENSMUSG00000015396.5	ENSMUST00000015540.4	2477	5	411	3	1	1	multi-exon	FALSE	canonical	0	0	junction_3	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGGTGTGTTCTTCTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	43938661	43956605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_43938727_43938821_43938944_43951008_43951205_43953077_43953185_43955032
ENSMUSG00000015451.17_3	chr17	-	1851	15	ISM	ENSMUSG00000015451.17	ENSMUST00000015595.13	5357	42	9105	4	725	-4	3prime_fragment	FALSE	canonical	0	0	junction_8	1.9059520091609	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAAGTCCTCTTGCGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	35033325	35028074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35028316_35028452_35028586_35028869_35028954_35029087_35029187_35029263_35029354_35029474_35029578_35030090_35030166_35030294_35030386_35030479_35030661_35030746_35030841_35031799_35031860_35032366_35032535_35032611_35032845_35033038_35033211_35033298
ENSMUSG00000015461.16_3	chr17	+	2500	18	FSM	ENSMUSG00000015461.16	ENSMUST00000015605.15	2566	18	59	7	4	-7	multi-exon	FALSE	canonical	3	325	junction_9	22.8588265568706	569	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAACGGCGGCCACCTT	9800	False	NA	4	True	AATAAA	-17	NA	34866178	34874041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34866291_34866633_34866714_34867192_34867272_34867550_34867643_34868091_34868228_34869274_34869361_34869473_34869610_34869693_34869826_34869959_34870094_34870535_34870722_34870803_34870896_34871621_34871802_34871962_34872071_34872187_34872270_34872475_34872547_34872677_34872790_34872894_34872980_34873444
ENSMUSG00000015468.15_0	chr17	+	6541	30	FSM	ENSMUSG00000015468.15	ENSMUST00000015612.14	6591	30	43	7	13	-7	multi-exon	TRUE	canonical	3	55	junction_11	11.3350235386032	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTATCTTCTGAGGGAC	NA	False	NA	7	True	AATAAA	-16	NA	34783284	34807470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34783484_34784274_34784357_34784446_34784743_34786315_34786664_34787137_34787261_34787366_34787604_34787690_34787847_34789008_34789204_34790710_34790825_34791469_34791584_34791651_34791775_34792722_34792883_34794036_34794183_34794380_34794534_34795382_34795501_34795742_34795831_34796391_34796543_34796921_34797107_34799893_34800147_34800352_34800466_34801372_34801897_34802323_34802708_34802802_34802979_34803385_34803606_34803754_34803825_34803964_34804104_34804878_34805184_34805500_34805649_34806090_34806189_34806347
ENSMUSG00000015468.15_30	chr17	+	3829	14	ISM	ENSMUSG00000015468.15	ENSMUST00000015612.14	6591	30	13211	6	-529	-6	3prime_fragment	FALSE	canonical	3	56	junction_11	12.1655250605964	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATCTTCTGAGGGACT	NA	False	NA	8	True	AATAAA	-17	NA	34796452	34807471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34796543_34796921_34797107_34799893_34800147_34800352_34800466_34801372_34801897_34802323_34802708_34802802_34802979_34803385_34803606_34803754_34803825_34803964_34804104_34804878_34805184_34805500_34805649_34806090_34806189_34806347
ENSMUSG00000015468.15_34	chr17	+	2902	10	ISM	ENSMUSG00000015468.15	ENSMUST00000015612.14	6591	30	18416	7	-1198	-7	3prime_fragment	FALSE	canonical	3	56	junction_7	13.9053236097316	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTATCTTCTGAGGGAC	NA	False	NA	7	True	AATAAA	-16	NA	34801657	34807470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34801897_34802323_34802708_34802802_34802979_34803385_34803606_34803754_34803825_34803964_34804104_34804878_34805184_34805500_34805649_34806090_34806189_34806347
ENSMUSG00000015468.15_37	chr17	+	2379	9	ISM	ENSMUSG00000015468.15	ENSMUST00000015612.14	6591	30	19367	6	-247	-6	3prime_fragment	FALSE	canonical	3	56	junction_6	14.6009417504488	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATCTTCTGAGGGACT	NA	False	NA	8	True	AATAAA	-17	NA	34802608	34807471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34802708_34802802_34802979_34803385_34803606_34803754_34803825_34803964_34804104_34804878_34805184_34805500_34805649_34806090_34806189_34806347
ENSMUSG00000015474.17_1	chr17	-	1681	9	FSM	ENSMUSG00000015474.17	ENSMUST00000166040.9	1139	9	23	-565	23	0	multi-exon	FALSE	canonical	3	10	junction_8	20.3312413541328	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGTGGCTTGGCTTATTCC	3349	False	NA	-2	True	AATAAA	-15	NA	34846990	34835637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846906
ENSMUSG00000015474.17_11	chr17	-	1721	9	FSM	ENSMUSG00000015474.17	ENSMUST00000064953.15	1729	9	5	3	5	-2	multi-exon	FALSE	canonical	2	11	junction_8	20.0249843945008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCGTGGCTTGGCTTATT	3993	False	NA	-4	True	AATAAA	-13	NA	34846346	34835639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846220
ENSMUSG00000015474.17_2	chr17	-	1764	8	FSM	ENSMUSG00000015474.17	ENSMUST00000171376.8	1750	8	-14	0	-12	0	multi-exon	TRUE	canonical	3	52	junction_2	8.14160391358572	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGTGGCTTGGCTTATTCC	4203	False	NA	-2	True	AATAAA	-15	NA	34846136	34835637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778
ENSMUSG00000015474.17_3	chr17	-	1716	9	FSM	ENSMUSG00000015474.17	ENSMUST00000171121.9	1710	9	-10	4	-10	-2	multi-exon	FALSE	canonical	3	52	junction_2	7.8700381193486	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCGTGGCTTGGCTTATT	3920	False	NA	-4	True	AATAAA	-13	NA	34846419	34835639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846298
ENSMUSG00000015474.17_4	chr17	-	1704	9	NIC	ENSMUSG00000015474.17	novel	1710	9	NA	NA	-187	-2	combination_of_known_junctions	FALSE	canonical	2	13	junction_8	19.4148783153539	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCGTGGCTTGGCTTATT	9886	False	NA	-4	True	AATAAA	-13	NA	34847200	34835639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34847091
ENSMUSG00000015474.17_6	chr17	-	1639	9	NIC	ENSMUSG00000015474.17	novel	1392	9	NA	NA	-15	-2	combination_of_known_junctions	FALSE	canonical	2	2	junction_8	22.80590658141	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCGTGGCTTGGCTTATT	4200	False	NA	-4	True	AATAAA	-13	NA	34846139	34835639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846095
ENSMUSG00000015478.14_1	chr17	-	1122	6	FSM	ENSMUSG00000015478.14	ENSMUST00000015622.8	1238	6	101	15	72	-15	multi-exon	FALSE	canonical	3	1022	junction_5	40.2124358874217	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACGTTGCTGGGAAGTC	896	False	NA	-38	True	NA	NA	NA	34822563	34820079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34821264_34821284_34822307
ENSMUSG00000015478.14_2	chr17	-	1270	4	FSM	ENSMUSG00000015478.14	ENSMUST00000174475.8	850	4	-213	-207	72	-16	multi-exon	FALSE	canonical	3	1022	junction_3	37.7211994624891	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACACGTTGCTGGGAAGT	896	False	NA	-39	True	NA	NA	NA	34822563	34820080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34820963_34821058_34821172_34821264_34821284_34822307
ENSMUSG00000015488.15_1	chr2	+	2599	6	NNC	ENSMUSG00000015488.15	novel	2689	5	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	34.6641024692693	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTCTGCCTGTCAC	NA	False	NA	41	True	AGTAAA	-18	NA	26899967	26911101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_26900118_26904104_26904178_26905495_26905622_26908384_26908493_26908899_26909516_26909575
ENSMUSG00000015488.15_21	chr2	+	1554	1	NIC	ENSMUSG00000015488.15	novel	1648	6	NA	NA	3952	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACACAGTCTGCCTGTCA	6468	False	NA	40	True	AGTAAA	-17	NA	26909546	26911100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_26909500_26911100
ENSMUSG00000015488.15_4	chr2	+	1595	3	FSM	ENSMUSG00000015488.15	ENSMUST00000114004.8	2194	3	24	575	24	0	multi-exon	FALSE	canonical	3	82	junction_1	8	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTACCTGTTCATCTATT	NA	False	NA	NA	False	AGTAAA	-18	NA	26899961	26906861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26900118_26904104_26904178_26905495
ENSMUSG00000015488.15_6	chr2	+	2665	5	FSM	ENSMUSG00000015488.15	ENSMUST00000114007.8	2689	5	24	0	24	0	multi-exon	FALSE	canonical	3	80	junction_3	7.54983443527075	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTCTGCCTGTCAC	NA	False	NA	41	True	AGTAAA	-18	NA	26899961	26911101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26900118_26904104_26904178_26905495_26905622_26908384_26908493_26908899
ENSMUSG00000015501.11_2	chr10	+	7137	6	ISM	ENSMUSG00000015501.11	ENSMUST00000015645.11	9763	9	163072	2	162427	-2	3prime_fragment	FALSE	canonical	2	4	junction_2	0.748331477354788	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGAAGTGTCTAGTTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	14005194	14027115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_14008543_14009483_14009639_14015128_14015305_14017984_14018087_14018802_14019699_14024655
ENSMUSG00000015522.19_11	chr3	+	4345	22	FSM	ENSMUSG00000015522.19	ENSMUST00000102749.11	2699	22	22	-1668	6	-2	multi-exon	TRUE	canonical	0	0	junction_11	68.4937059524599	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATTGTGTTGTGTTGTG	NA	False	NA	NA	False	TTTAAA	-20	NA	95341720	95404546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
ENSMUSG00000015522.19_13	chr3	+	4300	21	FSM	ENSMUSG00000015522.19	ENSMUST00000090804.12	4325	21	20	5	6	-2	multi-exon	FALSE	canonical	0	0	junction_10	84.9941174435031	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATTGTGTTGTGTTGTG	NA	False	NA	NA	False	TTTAAA	-20	NA	95341720	95404546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
ENSMUSG00000015522.19_16	chr3	+	4342	22	NIC	ENSMUSG00000015522.19	novel	2699	22	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	83.8073051654387	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATTGTGTTGTGTTGTG	NA	False	NA	NA	False	TTTAAA	-20	NA	95341720	95404546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401011_95401172_95401757_95401925_95402614
ENSMUSG00000015522.19_93	chr3	+	1338	1	ISM	ENSMUSG00000015522.19	ENSMUST00000090804.12	4325	21	61510	3	6495	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTGTTGTGTTGTGTG	NA	False	NA	NA	False	TTTAAA	-22	NA	95403210	95404548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95403200_95404500
ENSMUSG00000015536.15_0	chr13	+	1168	7	FSM	ENSMUSG00000015536.15	ENSMUST00000015680.11	1152	7	-16	0	2	0	multi-exon	FALSE	canonical	3	133	junction_2	16.9844700306551	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATAGATCCTGTCTCC	NA	False	NA	NA	False	AATAAA	-18	NA	114954796	114965259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
ENSMUSG00000015536.15_1	chr13	+	1044	6	FSM	ENSMUSG00000015536.15	ENSMUST00000166176.9	1855	6	5	806	1	1	multi-exon	FALSE	canonical	3	20	junction_1	59.3450924677011	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAGATCCTGTCTCCT	NA	False	NA	NA	False	AATAAA	-19	NA	114954799	114965260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
ENSMUSG00000015536.15_3	chr13	+	1971	6	NIC	ENSMUSG00000015536.15	novel	1193	7	NA	NA	-3	1	intron_retention	TRUE	canonical	3	133	junction_2	18.6010752377383	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAGATCCTGTCTCCT	NA	False	NA	NA	False	AATAAA	-19	NA	114954790	114965260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114962818_114964824
ENSMUSG00000015542.18_0	chr11	-	1149	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103038.8	1143	7	-7	1	-7	-1	multi-exon	FALSE	canonical	2	2	junction_5	51.0217818409179	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCCCTTGTTTGTTCAC	NA	False	NA	-6	True	AGTAAA	-15	NA	115078165	115073658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077661_115077944
ENSMUSG00000015542.18_1	chr11	-	1152	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103040.11	1204	7	51	1	-7	-1	multi-exon	FALSE	canonical	2	2	junction_5	40.7553677446297	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCCCTTGTTTGTTCAC	NA	False	NA	-6	True	AGTAAA	-15	NA	115078165	115073658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077664_115077944
ENSMUSG00000015542.18_2	chr11	-	1400	6	ISM	ENSMUSG00000015542.18	ENSMUST00000103038.8	1143	7	26	1	26	-1	intron_retention	FALSE	canonical	2	2	junction_5	44.6345157921535	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCCCTTGTTTGTTCAC	NA	False	NA	-6	True	AGTAAA	-15	NA	115078132	115073658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574
ENSMUSG00000015542.18_4	chr11	-	2786	3	NIC	ENSMUSG00000015542.18	novel	1204	7	NA	NA	-7	-1	intron_retention	FALSE	canonical	2	2	junction_2	49.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCCCTTGTTTGTTCAC	NA	False	NA	-6	True	AGTAAA	-15	NA	115078165	115073658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115074092_115074180_115075943_115077574
ENSMUSG00000015568.17_0	chr8	+	2024	10	FSM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	166	1925	0	-1925	multi-exon	TRUE	canonical	3	87	junction_5	14.4871164560059	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69333308	69357661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157
ENSMUSG00000015568.17_4	chr8	+	1652	8	ISM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	12131	1925	1878	-1925	3prime_fragment	FALSE	canonical	3	87	junction_3	16.1573891606842	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69345273	69357661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157
ENSMUSG00000015568.17_5	chr8	+	1380	6	ISM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	15171	1932	4918	-1932	3prime_fragment	FALSE	canonical	3	87	junction_1	19.0305018325844	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCCCCCACCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69348313	69357654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157
ENSMUSG00000015568.17_7	chr8	+	1343	1	ISM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	25092	9	14839	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATGATACTAAGTCATCA	NA	False	NA	4	True	AATAAA	-15	NA	69358234	69359577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_69358200_69359600
ENSMUSG00000015575.16_1	chr17	+	762	4	FSM	ENSMUSG00000015575.16	ENSMUST00000015719.16	823	4	55	6	13	-6	multi-exon	FALSE	canonical	3	1134	junction_3	173.829418300432	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAATCTGGCTCCAGTGT	NA	False	NA	31	True	AATAAA	-19	NA	26895398	26918615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26895553_26901651_26901700_26914328_26914459_26918185
ENSMUSG00000015575.16_2	chr17	+	744	4	NNC	ENSMUSG00000015575.16	novel	823	4	NA	NA	17	-4	at_least_one_novel_splicesite	FALSE	canonical	3	381	junction_3	528.401993435553	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATCTGGCTCCAGTGTTT	NA	False	NA	33	True	AATAAA	-21	NA	26895402	26918617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_26895553_26901651_26901700_26914328_26914443_26918185
ENSMUSG00000015597.18_1	chr17	+	7770	10	FSM	ENSMUSG00000015597.18	ENSMUST00000113481.9	13060	10	20	5270	0	3433	multi-exon	FALSE	canonical	3	36	junction_4	9.25496196575947	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACAAGTTTAAATCCATTT	NA	False	NA	27	True	AATAAA	-28	NA	46694676	46725680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46695257_46697637_46697790_46707587_46708231_46709565_46711018_46713659_46713760_46716708_46717011_46719944_46720146_46720605_46720706_46721198_46721318_46721559
ENSMUSG00000015597.18_13	chr17	+	2453	1	ISM	ENSMUSG00000015597.18	ENSMUST00000113481.9	13060	10	28563	5278	2665	3425	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGCTTGGACAAGTTTAA	NA	False	NA	19	True	AATAAA	-20	NA	46723219	46725672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46723200_46725700
ENSMUSG00000015597.18_14	chr17	+	173	1	ISM	ENSMUSG00000015597.18	ENSMUST00000113481.9	13060	10	32569	3552	6671	-3552	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAGATTTTAAAACAG	NA	False	NA	NA	False	NA	NA	NA	46727225	46727398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46727200_46727400
ENSMUSG00000015597.18_20	chr17	+	6934	8	ISM	ENSMUSG00000015597.18	ENSMUST00000113481.9	13060	10	13036	5269	-3289	3434	3prime_fragment	FALSE	canonical	3	36	junction_2	8.19158353533226	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAGTTTAAATCCATTTT	NA	False	NA	28	True	AATAAA	-29	NA	46707692	46725681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46708231_46709565_46711018_46713659_46713760_46716708_46717011_46719944_46720146_46720605_46720706_46721198_46721318_46721559
ENSMUSG00000015597.18_21	chr17	+	5782	7	ISM	ENSMUSG00000015597.18	ENSMUST00000113481.9	13060	10	15500	5292	-825	3411	3prime_fragment	FALSE	canonical	3	36	junction_1	8.77496438739212	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATTTATGAAGTTGGC	NA	False	NA	5	True	AATAAA	-6	NA	46710156	46725658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46711018_46713659_46713760_46716708_46717011_46719944_46720146_46720605_46720706_46721198_46721318_46721559
ENSMUSG00000015597.18_7	chr17	+	3950	8	FSM	ENSMUSG00000015597.18	ENSMUST00000138127.8	3936	8	-23	9	-3	-9	multi-exon	FALSE	canonical	0	0	junction_7	19.5948764648688	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGAAAAGTGAGCTTCTA	NA	False	NA	NA	False	AATAAA	-12	NA	46694653	46731837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46695257_46697637_46697790_46707587_46708231_46709565_46711018_46713659_46713760_46716708_46717011_46719944_46720146_46731340
ENSMUSG00000015605.7_0	chr17	-	2626	7	FSM	ENSMUSG00000015605.7	ENSMUST00000015749.7	2616	7	-16	6	-16	-6	multi-exon	FALSE	canonical	3	76	junction_2	5.5	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTAACTTTTTTTT	NA	False	NA	-11	True	TATAAA	-12	NA	46867117	46859260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46860105_46860361_46860439_46860770_46860963_46861826_46861947_46862456_46862719_46864485_46864753_46866253
ENSMUSG00000015605.7_2	chr17	-	1726	6	ISM	ENSMUSG00000015605.7	ENSMUST00000015749.7	2616	7	2385	6	-1997	-6	3prime_fragment	FALSE	canonical	3	76	junction_2	5.97996655509042	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTAACTTTTTTTT	NA	False	NA	-11	True	TATAAA	-12	NA	46864716	46859260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_46860105_46860361_46860439_46860770_46860963_46861826_46861947_46862456_46862719_46864485
ENSMUSG00000015605.7_3	chr17	-	2431	6	NIC	ENSMUSG00000015605.7	novel	2616	7	NA	NA	-13	-6	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	30.5587957877924	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTAACTTTTTTTT	NA	False	NA	-11	True	TATAAA	-12	NA	46867114	46859260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_46860105_46860361_46860439_46861826_46861947_46862456_46862719_46864485_46864753_46866253
ENSMUSG00000015647.10_14	chr2	-	3904	25	ISM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	42449	1	-3767	-1	3prime_fragment	FALSE	canonical	3	184	junction_24	49.907675177939	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTGTGTTGATTTAT	NA	False	NA	-5	True	ATTAAA	-13	NA	179825203	179818166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150_179824262_179824559_179824663_179824756_179824899_179825112
ENSMUSG00000015647.10_24	chr2	-	3561	22	ISM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	43398	1	-2818	-1	3prime_fragment	FALSE	canonical	3	206	junction_19	45.9620271148688	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTGTGTTGATTTAT	NA	False	NA	-5	True	ATTAAA	-13	NA	179824254	179818166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150
ENSMUSG00000015647.10_28	chr2	-	2000	12	ISM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	46422	1	206	-1	3prime_fragment	TRUE	canonical	3	256	junction_11	29.9009383749487	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTGTGTTGATTTAT	NA	False	NA	-5	True	ATTAAA	-13	NA	179821230	179818166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044
ENSMUSG00000015647.10_35	chr2	-	4226	27	ISM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	41701	1	-4515	-1	3prime_fragment	FALSE	canonical	3	156	junction_26	54.3681837868806	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTGTGTTGATTTAT	NA	False	NA	-5	True	ATTAAA	-13	NA	179825951	179818166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150_179824262_179824559_179824663_179824756_179824899_179825112_179825268_179825410_179825528_179825810
ENSMUSG00000015647.10_4	chr2	-	2943	18	ISM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	44889	1	-1327	-1	3prime_fragment	FALSE	canonical	3	215	junction_17	41.8173653106277	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTGTGTTGATTTAT	NA	False	NA	-5	True	ATTAAA	-13	NA	179822763	179818166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634
ENSMUSG00000015647.10_44	chr2	-	3305	21	ISM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	44260	1	-1956	-1	3prime_fragment	FALSE	canonical	3	206	junction_19	45.4218834924313	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTGTGTTGATTTAT	NA	False	NA	-5	True	ATTAAA	-13	NA	179823392	179818166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364
ENSMUSG00000015647.10_55	chr2	-	4394	28	ISM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	41347	1	-4869	-1	3prime_fragment	FALSE	canonical	3	156	junction_26	55.5458016128812	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTGTGTTGATTTAT	NA	False	NA	-5	True	ATTAAA	-13	NA	179826305	179818166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150_179824262_179824559_179824663_179824756_179824899_179825112_179825268_179825410_179825528_179825810_179826008_179826193
ENSMUSG00000015647.10_7	chr2	-	3665	23	ISM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	42996	1	-3220	-1	3prime_fragment	FALSE	canonical	3	206	junction_19	45.930710480998	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTGTGTTGATTTAT	NA	False	NA	-5	True	ATTAAA	-13	NA	179824656	179818166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150_179824262_179824559
ENSMUSG00000015647.10_88	chr2	-	4508	29	ISM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	40476	1	-5740	-1	3prime_fragment	FALSE	canonical	3	153	junction_28	57.8472985452181	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTGTGTTGATTTAT	NA	False	NA	-5	True	ATTAAA	-13	NA	179827176	179818166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150_179824262_179824559_179824663_179824756_179824899_179825112_179825268_179825410_179825528_179825810_179826008_179826193_179826365_179827121
ENSMUSG00000015647.10_9	chr2	-	11380	79	FSM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	7	1	7	-1	multi-exon	TRUE	canonical	2	61	junction_68	85.5106215839985	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTGTGTTGATTTAT	NA	False	NA	-5	True	ATTAAA	-13	NA	179867645	179818166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150_179824262_179824559_179824663_179824756_179824899_179825112_179825268_179825410_179825528_179825810_179826008_179826193_179826365_179827121_179827234_179827415_179827527_179827606_179827759_179828354_179828505_179828593_179828775_179828968_179829070_179829338_179829554_179829651_179829733_179830057_179830186_179830359_179830474_179831125_179831357_179831952_179832037_179832122_179832225_179832432_179832595_179832697_179832839_179833020_179833166_179833343_179833549_179833886_179834099_179834181_179834298_179834655_179834796_179835196_179835324_179835484_179835687_179835767_179835866_179836282_179836392_179836467_179836629_179836938_179837093_179837164_179837272_179837347_179837491_179837673_179837813_179837960_179838118_179838276_179838377_179838828_179838935_179839018_179839069_179839165_179839272_179839509_179839563_179840053_179840192_179840267_179840403_179840488_179840624_179840722_179840861_179840942_179841084_179843250_179843314_179843513_179843649_179843771_179843863_179843953_179844073_179844184_179844301_179848517_179848616_179848725_179848897_179848979_179849099_179850046_179850165_179863018_179863172_179867283
ENSMUSG00000015652.10_0	chr5	-	1224	5	FSM	ENSMUSG00000015652.10	ENSMUST00000015796.9	1230	5	4	2	4	-2	multi-exon	FALSE	canonical	3	19	junction_3	6.38357266740185	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTGTATCACAACTGTT	NA	False	NA	NA	False	AATAAA	-24	NA	5799322	5786318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_5786674_5789795_5789961_5790349_5790863_5792825_5792941_5799246
ENSMUSG00000015653.14_11	chr5	-	3063	4	FSM	ENSMUSG00000015653.14	ENSMUST00000164219.8	10089	4	128	6898	128	1	multi-exon	FALSE	canonical	3	20	junction_3	6.48074069840786	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTATCTTTCCCACCATT	NA	False	NA	NA	False	AATAAA	-20	NA	5732935	5721728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533
ENSMUSG00000015653.14_16	chr5	-	1096	1	ISM	ENSMUSG00000015653.14	ENSMUST00000115426.9	10408	6	24952	3702	7659	2407	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTCTGCTTTTCTATC	NA	False	NA	NA	False	ATTAAA	-19	NA	5719626	5718530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_5718500_5719600
ENSMUSG00000015653.14_2	chr5	-	6599	7	NNC	ENSMUSG00000015653.14	novel	3657	6	NA	NA	-20	2407	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.7725834852973	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTCTGCTTTTCTATC	5264	False	NA	NA	False	ATTAAA	-19	NA	5744087	5718530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_5720029_5720066_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5743957
ENSMUSG00000015653.14_3	chr5	-	3486	6	FSM	ENSMUSG00000015653.14	ENSMUST00000115426.9	10408	6	22	6900	22	1	multi-exon	FALSE	canonical	3	8	junction_5	11.3384302264467	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTATCTTTCCCACCATT	4795	False	NA	NA	False	AATAAA	-20	NA	5744556	5721728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5744379
ENSMUSG00000015653.14_7	chr5	-	3429	6	FSM	ENSMUSG00000015653.14	ENSMUST00000015797.11	3657	6	-11	239	-11	0	multi-exon	FALSE	canonical	3	20	junction_3	7.4565407529229	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTATCTTTCCCACCAT	5273	False	NA	NA	False	AATAAA	-19	NA	5744078	5721729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5743957
ENSMUSG00000015653.14_9	chr5	-	1763	1	ISM	ENSMUSG00000015653.14	ENSMUST00000115426.9	10408	6	21087	6900	3794	1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTATCTTTCCCACCATT	NA	False	NA	NA	False	AATAAA	-20	NA	5723491	5721728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_5721700_5723500
ENSMUSG00000015656.18_0	chr9	+	2099	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	291	4	-1	-3	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	1807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATACAGTTGTCCTGACT	2458	False	NA	6	True	AATAAA	-16	NA	40712570	40716492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
ENSMUSG00000015656.18_32	chr9	+	2027	8	ISM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	932	4	-426	-3	3prime_fragment	FALSE	canonical	3	3928	junction_2	6440.2006179932	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATACAGTTGTCCTGACT	3099	False	NA	6	True	AATAAA	-16	NA	40713211	40716492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
ENSMUSG00000015656.18_88	chr9	+	1255	5	ISM	ENSMUSG00000015656.18	ENSMUST00000117557.8	2019	9	1873	4	833	-3	3prime_fragment	FALSE	canonical	3	17245	junction_1	1783.23559506309	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATACAGTTGTCCTGACT	4358	False	NA	6	True	AATAAA	-16	NA	40714470	40716492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
ENSMUSG00000015659.13_13	chr17	-	4253	6	ISM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	27995	-1621	-358	1621	3prime_fragment	FALSE	canonical	3	72	junction_2	5.65685424949238	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCTGGCTTGTTCAATT	4493	False	NA	-16	True	NA	NA	NA	6102021	6090849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964
ENSMUSG00000015659.13_2	chr17	-	5738	5	ISM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	27380	-1621	-973	1621	intron_retention	FALSE	canonical	3	72	junction_2	6.29980158417708	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCTGGCTTGTTCAATT	3878	False	NA	-16	True	NA	NA	NA	6102636	6090849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999
ENSMUSG00000015659.13_24	chr17	-	3931	8	ISM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	23	19661	9	3092	5prime_fragment	FALSE	canonical	3	78	junction_3	11.8545608204141	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAAGATGGCAGACTTGT	2616	False	NA	NA	False	AATAAA	-27	NA	6129993	6112131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ENSMUSG00000015659.13_25	chr17	-	4040	7	ISM	ENSMUSG00000015659.13	ENSMUST00000024570.6	2033	16	-3	17604	-3	3279	5prime_fragment	FALSE	canonical	3	21	junction_3	29.3792254644143	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCAGGGAGGACTGTGG	2604	False	NA	NA	False	TATAAA	-12	NA	6130005	6111944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_6115353_6116945_6117068_6117803_6117936_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ENSMUSG00000015659.13_3	chr17	-	5509	16	FSM	ENSMUSG00000015659.13	ENSMUST00000024570.6	2033	16	10	-3486	10	1616	multi-exon	FALSE	canonical	3	21	junction_12	20.0614611188274	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTACCATCTGGCTTGTT	2617	False	NA	-21	True	NA	NA	NA	6129992	6090854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ENSMUSG00000015659.13_4	chr17	-	5600	17	FSM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	23	-1616	9	1616	multi-exon	FALSE	canonical	3	56	junction_6	12.4296457612436	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTACCATCTGGCTTGTT	2616	False	NA	-21	True	NA	NA	NA	6129993	6090854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ENSMUSG00000015659.13_5	chr17	-	3754	16	NIC	ENSMUSG00000015659.13	novel	4007	17	NA	NA	9	-116	combination_of_known_splicesites	FALSE	canonical	3	9	junction_8	22.4376667434225	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGATTTCTGAATAATGCT	2616	False	NA	NA	False	CATAAA	-6	NA	6129993	6092586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ENSMUSG00000015668.14_1	chrX	-	1042	7	FSM	ENSMUSG00000015668.14	ENSMUST00000059099.7	1041	7	21	-22	21	0	multi-exon	FALSE	canonical	3	137	junction_6	158.307366291724	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99669520	99666491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669421
ENSMUSG00000015668.14_2	chrX	-	979	7	FSM	ENSMUSG00000015668.14	ENSMUST00000015812.12	1626	7	647	0	14	0	multi-exon	FALSE	canonical	3	301	junction_6	98.6728601659713	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99669527	99666491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
ENSMUSG00000015668.14_3	chrX	-	1354	5	NIC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	14	-1	intron_retention	FALSE	canonical	3	301	junction_4	119.69962405956	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACTGCTTGAATATAAAA	NA	False	NA	-5	True	AATAAA	-16	NA	99669527	99666489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
ENSMUSG00000015668.14_7	chrX	-	261	1	ISM	ENSMUSG00000015668.14	ENSMUST00000144643.8	1497	6	2794	1	2791	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACTGCTTGAATATAAAA	NA	False	NA	-5	True	AATAAA	-16	NA	99666750	99666489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_99666500_99666800
ENSMUSG00000015671.12_0	chr13	+	836	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	20	2055	20	-2055	multi-exon	FALSE	canonical	3	4380	junction_5	234.832723791352	1217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAATTTTAGTTTTTA	NA	False	NA	6	True	AATAAA	-6	NA	14787844	14800166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015672.5_0	chr13	-	763	3	FSM	ENSMUSG00000015672.5	ENSMUST00000220621.2	3013	3	129	2121	-9	68	multi-exon	FALSE	canonical	3	1082	junction_1	15.5	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGCTCAATGGATTAATT	NA	False	NA	-15	True	AATAAA	-17	NA	14787621	14784889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_14785326_14786007_14786190_14787476
ENSMUSG00000015672.5_2	chr13	-	1446	2	NIC	ENSMUSG00000015672.5	novel	3013	3	NA	NA	-4	74	intron_retention	FALSE	canonical	3	1113	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGGATTAATTTGTGTA	NA	False	NA	-9	True	AATAAA	-23	NA	14787616	14784883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_14786190_14787476
ENSMUSG00000015672.5_6	chr13	-	788	3	FSM	ENSMUSG00000015672.5	ENSMUST00000221699.2	1174	3	-6	392	-4	68	multi-exon	FALSE	canonical	3	41	junction_2	520.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGCTCAATGGATTAATT	NA	False	NA	-15	True	AATAAA	-17	NA	14787616	14784889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_14785326_14786007_14786190_14787446
ENSMUSG00000015697.15_1	chr3	-	4574	22	FSM	ENSMUSG00000015697.15	ENSMUST00000107170.3	4622	22	31	17	-15	-17	multi-exon	FALSE	canonical	3	141	junction_11	31.3428122874475	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTAACAGTACAT	1673	False	NA	-21	True	AATATA	-9	NA	95264482	95230852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
ENSMUSG00000015697.15_10	chr3	-	2542	10	ISM	ENSMUSG00000015697.15	ENSMUST00000107171.10	4573	22	18460	17	18393	-17	3prime_fragment	FALSE	canonical	3	179	junction_9	24.3010948287632	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTAACAGTACAT	5147	False	NA	-21	True	AATATA	-9	NA	95246007	95230852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656
ENSMUSG00000015697.15_4	chr3	-	1606	7	ISM	ENSMUSG00000015697.15	ENSMUST00000124638.8	5652	21	29617	17	29551	-17	3prime_fragment	FALSE	canonical	3	215	junction_2	14.5487685618635	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTAACAGTACAT	6321	False	NA	-21	True	AATATA	-9	NA	95234849	95230852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518
ENSMUSG00000015697.15_7	chr3	-	4571	22	FSM	ENSMUSG00000015697.15	ENSMUST00000107171.10	4573	22	-15	17	-15	-17	multi-exon	FALSE	canonical	3	29	junction_11	47.7030211966969	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTAACAGTACAT	1673	False	NA	-21	True	AATATA	-9	NA	95264482	95230852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247374_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
ENSMUSG00000015697.15_8	chr3	-	5666	21	NIC	ENSMUSG00000015697.15	novel	4622	22	NA	NA	-17	-7	intron_retention	FALSE	canonical	3	141	junction_10	31.3773803877889	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTACATTTTGGTCTGA	1671	False	NA	-11	True	ATTAAA	-8	NA	95264484	95230842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
ENSMUSG00000015697.15_9	chr3	-	4619	22	FSM	ENSMUSG00000015697.15	ENSMUST00000015841.12	4658	22	29	10	-15	-10	multi-exon	FALSE	canonical	3	19	junction_21	51.1160255943511	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAACAGTACATTTTGGTC	1673	False	NA	-14	True	ATTAAA	-5	NA	95264482	95230845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264337
ENSMUSG00000015709.10_0	chr7	-	6093	19	FSM	ENSMUSG00000015709.10	ENSMUST00000085077.5	6151	19	55	3	55	0	multi-exon	FALSE	canonical	1	1	junction_5	2.23123173644702	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGAGTGCCTTGGACTG	NA	False	NA	-1	True	AATAAA	-17	NA	84059272	83895488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_83899363_83900573_83900711_83911600_83911752_83912386_83912526_83914782_83914883_83917112_83917237_83918046_83918120_83924542_83924695_83931304_83931380_83933200_83933336_83934981_83935059_83954004_83954091_83954401_83954468_83960080_83960184_83992949_83993164_83996549_83996764_84003727_84003776_84010761_84010877_84059062
ENSMUSG00000015711.9_1	chr3	-	2816	8	FSM	ENSMUSG00000015711.9	ENSMUST00000015855.8	3140	8	322	2	322	-2	multi-exon	FALSE	canonical	3	150	junction_5	23.7538396466589	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCTTGTTTCTTTTTAA	4672	False	NA	NA	False	ATTAAA	-17	NA	95189065	95160986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95162739_95165337_95165497_95166550_95166646_95169521_95169681_95170902_95171088_95172728_95172932_95175541_95175635_95188895
ENSMUSG00000015711.9_7	chr3	-	1024	1	ISM	ENSMUSG00000015711.9	ENSMUST00000015855.8	3140	8	27378	1	14246	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCTTGTTTCTTTTTAAA	NA	False	NA	NA	False	ATTAAA	-18	NA	95162009	95160985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95161000_95162000
ENSMUSG00000015714.12_1	chr3	+	2021	11	FSM	ENSMUSG00000015714.12	ENSMUST00000015858.12	2216	11	158	37	-5	-37	multi-exon	FALSE	canonical	3	406	junction_10	31.9782738746168	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAACATGACTGTGTC	4476	False	NA	8	True	ATTAAA	-15	NA	95222552	95230873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUSG00000015714.12_18	chr3	+	2297	9	NIC	ENSMUSG00000015714.12	novel	2216	11	NA	NA	-5	-37	intron_retention	FALSE	canonical	3	406	junction_8	25.2929708614864	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAACATGACTGTGTC	4476	False	NA	8	True	ATTAAA	-15	NA	95222552	95230873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUSG00000015714.12_4	chr3	+	2212	10	NIC	ENSMUSG00000015714.12	novel	2216	11	NA	NA	-5	-34	intron_retention	FALSE	canonical	3	406	junction_9	33.6675834125276	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACATGACTGTGTCAGA	4476	False	NA	11	True	ATTAAA	-18	NA	95222552	95230876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUSG00000015733.14_0	chr6	+	2215	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	70	252	11	-252	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	1947	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATTGTATAGATTTTTAA	14	True	NA	-22	True	AATAAA	-15	NA	17637051	17666719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
ENSMUSG00000015745.10_0	chr3	-	1485	6	FSM	ENSMUSG00000015745.10	ENSMUST00000015889.10	1931	6	33	413	33	-23	multi-exon	FALSE	canonical	3	9	junction_2	1.49666295470958	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATCAAAT	1424	False	NA	NA	False	GATAAA	-23	NA	95903280	95896153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95896946_95898112_95898215_95898755_95898861_95899449_95899591_95902833_95902981_95903082
ENSMUSG00000015747.6_1	chr3	-	2005	15	FSM	ENSMUSG00000015747.6	ENSMUST00000015891.6	2637	15	626	6	-10	-6	multi-exon	TRUE	canonical	3	42	junction_11	13.9571136130707	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCACAGGCTTCAGTGTT	NA	False	NA	-11	True	AATAAA	-20	NA	95965152	95907149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95907464_95926920_95927053_95938317_95938440_95940090_95940199_95940976_95941136_95948649_95948818_95949620_95949735_95950105_95950241_95953663_95953775_95954309_95954448_95954558_95954628_95955619_95955700_95960350_95960412_95964291_95964427_95964993
ENSMUSG00000015747.6_5	chr3	-	376	2	FSM	ENSMUSG00000015747.6	ENSMUST00000140518.2	266	2	-111	1	0	-1	multi-exon	FALSE	canonical	3	103	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGTGGCATCATAATTAT	NA	False	NA	NA	False	AATAAA	-15	NA	95965142	95964199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95964427_95964993
ENSMUSG00000015748.14_1	chr3	-	2365	16	FSM	ENSMUSG00000015748.14	ENSMUST00000015892.14	2933	16	70	498	-34	0	multi-exon	FALSE	canonical	3	400	junction_5	22.8428447343048	573	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATGATATTTTT	NA	False	NA	-38	True	ATTAAA	-12	NA	95763127	95737933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
ENSMUSG00000015749.13_0	chr3	+	3216	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	47	11	10	-11	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	2184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATAATGACTAGCTTCA	NA	False	NA	94	True	AATAAA	-11	NA	95836604	95854691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
ENSMUSG00000015749.13_1	chr3	+	3180	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	15	-1814	10	-11	multi-exon	FALSE	canonical	3	152	junction_5	557.690301352123	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATAATGACTAGCTTCA	NA	False	NA	94	True	AATAAA	-11	NA	95836604	95854691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
ENSMUSG00000015749.13_59	chr3	+	1719	1	ISM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	16418	8	1460	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATGACTAGCTTCAGTG	NA	False	NA	97	True	AATAAA	-14	NA	95852975	95854694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95853000_95854700
ENSMUSG00000015750.16_0	chr3	+	1692	7	FSM	ENSMUSG00000015750.16	ENSMUST00000056710.10	1601	7	-74	-17	12	17	multi-exon	FALSE	canonical	3	108	junction_6	85.2670641116617	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTGGGGGGACTTGGCT	NA	False	NA	-3	True	AATAAA	-12	NA	95801292	95804774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548_95803673_95804005
ENSMUSG00000015750.16_1	chr3	+	2022	6	FSM	ENSMUSG00000015750.16	ENSMUST00000015894.12	2863	6	15	826	15	17	multi-exon	FALSE	canonical	3	313	junction_4	15.0651916682132	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTGGGGGGACTTGGCT	NA	False	NA	-3	True	AATAAA	-12	NA	95801295	95804774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548
ENSMUSG00000015750.16_3	chr3	+	2577	5	NIC	ENSMUSG00000015750.16	novel	2863	6	NA	NA	-2	18	intron_retention	FALSE	canonical	3	313	junction_3	16.8374582404827	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGGGGGGACTTGGCTT	NA	False	NA	-2	True	AATAAA	-13	NA	95801278	95804775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548
ENSMUSG00000015755.17_0	chr10	-	3866	6	ISM	ENSMUSG00000015755.17	ENSMUST00000146444.8	4380	7	31439	3	-531	-3	3prime_fragment	FALSE	canonical	3	37	junction_3	7.11055553385247	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGATTTTGTGGCTT	NA	False	NA	-9	True	ATTAAA	-14	NA	7800555	7781419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_7783342_7785810_7785892_7786852_7786947_7787151_7787313_7794877_7796379_7800448
ENSMUSG00000015755.17_1	chr10	-	4214	7	FSM	ENSMUSG00000015755.17	ENSMUST00000146444.8	4380	7	163	3	163	-3	multi-exon	FALSE	canonical	3	30	junction_6	9.12262145560267	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGATTTTGTGGCTT	1451	False	NA	-9	True	ATTAAA	-14	NA	7831831	7781419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_7783342_7785810_7785892_7786852_7786947_7787151_7787313_7794877_7796379_7800448_7800637_7831564
ENSMUSG00000015755.17_12	chr10	-	2200	4	ISM	ENSMUSG00000015755.17	ENSMUST00000146444.8	4380	7	44717	26	-27	-26	3prime_fragment	FALSE	canonical	3	37	junction_3	7.48331477354788	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATTAAAAAAACTTATA	5537	False	NA	-32	True	NA	NA	NA	7787277	7781442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_7783342_7785810_7785892_7786852_7786947_7787151
ENSMUSG00000015755.17_2	chr10	-	2829	5	ISM	ENSMUSG00000015755.17	ENSMUST00000146444.8	4380	7	36546	3	4576	-3	3prime_fragment	FALSE	canonical	3	37	junction_3	7.15454401062709	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGATTTTGTGGCTT	NA	False	NA	-9	True	ATTAAA	-14	NA	7795448	7781419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_7783342_7785810_7785892_7786852_7786947_7787151_7787313_7794877
ENSMUSG00000015755.17_3	chr10	-	2075	3	FSM	ENSMUSG00000015755.17	ENSMUST00000142007.2	618	3	327	-1784	327	-2	multi-exon	FALSE	canonical	3	49	junction_2	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGATTTTGTGGCTTG	5891	False	NA	-8	True	ATTAAA	-15	NA	7786923	7781418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_7783342_7785810_7785892_7786852
ENSMUSG00000015755.17_4	chr10	-	4517	8	NIC	ENSMUSG00000015755.17	novel	4380	7	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	2	3	junction_7	19.8185647866863	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGATTTTGTGGCTTG	1290	False	NA	-8	True	ATTAAA	-15	NA	7831992	7781418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_7783342_7785810_7785892_7786852_7786947_7787151_7787313_7794877_7796379_7800448_7800637_7808831_7808973_7831564
ENSMUSG00000015755.17_6	chr10	-	1648	1	ISM	ENSMUSG00000015755.17	ENSMUST00000146444.8	4380	7	48928	2	3198	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGATTTTGTGGCTTG	9748	False	NA	-8	True	ATTAAA	-15	NA	7783066	7781418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_7781400_7783100
ENSMUSG00000015757.11_0	chr10	+	2866	13	FSM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	28	577	-2	-577	multi-exon	FALSE	canonical	3	182	junction_12	33.3716446503115	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATATCAGCTTACTTTT	1150	False	NA	5	True	AGTAAA	-10	NA	7668682	7698322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
ENSMUSG00000015757.11_26	chr10	+	2010	1	ISM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	28235	0	21560	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGCATGTGTTCTCTCT	5588	False	NA	14	True	NA	NA	NA	7696889	7698899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_7696900_7698900
ENSMUSG00000015757.11_3	chr10	+	3403	12	NIC	ENSMUSG00000015757.11	novel	3471	13	NA	NA	2	-575	intron_retention	FALSE	canonical	3	182	junction_11	34.8541233910046	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATATCAGCTTACTTTTTT	1154	False	NA	7	True	AGTAAA	-12	NA	7668686	7698324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
ENSMUSG00000015759.12_1	chr14	-	1329	5	FSM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	103	106	26	-106	multi-exon	FALSE	canonical	3	505	junction_4	16.1322658049017	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGATGCTTTGCTGTGCAT	NA	False	NA	NA	False	AATAAA	-11	NA	47025765	47013129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
ENSMUSG00000015759.12_4	chr14	-	506	1	ISM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	12229	110	4080	-110	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAGATGCTTTGCTGT	NA	False	NA	NA	False	AATAAA	-7	NA	47013639	47013133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_47013100_47013600
ENSMUSG00000015766.15_0	chr6	-	4087	22	FSM	ENSMUSG00000015766.15	ENSMUST00000058210.13	4567	22	29	451	-14	-28	multi-exon	FALSE	canonical	3	114	junction_13	15.9268452335348	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATAGCTTCTATCTCA	4027	False	NA	-28	True	AATAAA	-19	NA	137626254	137454693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137516319_137516400_137568415_137568491_137626049
ENSMUSG00000015766.15_25	chr6	-	4071	22	NIC	ENSMUSG00000015766.15	novel	4567	22	NA	NA	-10	-35	combination_of_known_junctions	FALSE	canonical	2	4	junction_20	33.102397307189	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATATTAATAAATAGCTTC	4031	False	NA	-35	True	AATAAA	-12	NA	137626250	137454700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137516319_137516395_137568415_137568491_137626049
ENSMUSG00000015766.15_6	chr6	-	4024	21	FSM	ENSMUSG00000015766.15	ENSMUST00000111878.8	3560	21	28	-492	-15	-17	multi-exon	FALSE	canonical	0	0	junction_20	34.6389953664941	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATCTCATCAACACCAGA	4026	False	NA	-17	True	AATAAA	-30	NA	137626255	137454682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137516319_137516400_137626049
ENSMUSG00000015766.15_8	chr6	-	4034	21	NIC	ENSMUSG00000015766.15	novel	4567	22	NA	NA	21	-9	combination_of_known_junctions	FALSE	canonical	3	16	junction_19	31.4249502784014	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAACACCAGAATGTTTGC	4019	False	NA	-9	True	AATAAA	-38	NA	137626262	137454674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137568415_137568491_137626049
ENSMUSG00000015776.13_0	chr2	-	3444	3	FSM	ENSMUSG00000015776.13	ENSMUST00000102899.10	3506	3	57	5	-42	-5	multi-exon	FALSE	canonical	3	168	junction_1	2.5	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTGTCTGTCTTTC	NA	False	NA	-9	True	AATAAA	-13	NA	26800632	26795278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26798314_26799004_26799086_26800304
ENSMUSG00000015776.13_1	chr2	-	1365	4	FSM	ENSMUSG00000015776.13	ENSMUST00000015920.12	973	4	-71	-321	37	-5	multi-exon	FALSE	canonical	3	133	junction_1	17.7951304200522	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTGTCTGTCTTTC	NA	False	NA	-9	True	AATAAA	-13	NA	26800652	26795278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26796006_26798104_26798314_26799004_26799086_26800304
ENSMUSG00000015776.13_2	chr2	-	1879	1	ISM	ENSMUSG00000015776.13	ENSMUST00000102899.10	3506	3	3532	5	3424	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTGTCTGTCTTTC	NA	False	NA	-9	True	AATAAA	-13	NA	26797157	26795278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26795300_26797200
ENSMUSG00000015776.13_4	chr2	-	3445	3	NNC	ENSMUSG00000015776.13	novel	3506	3	NA	NA	-41	-5	intron_retention	FALSE	canonical	3	8	junction_2	80	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTGTCTGTCTTTC	NA	False	NA	-9	True	AATAAA	-13	NA	26800631	26795278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_26798314_26799004_26799086_26800302
ENSMUSG00000015787.16_0	chr2	-	1672	7	NNC	ENSMUSG00000015787.16	novel	1811	6	NA	NA	65	-205	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	1.7950549357115	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGAAGTTTTTAGTTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	26746745	26732719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_26733887_26735967_26736103_26736585_26736622_26738262_26738320_26738932_26739003_26746433_26746565_26746669
ENSMUSG00000015790.17_0	chr2	-	977	9	FSM	ENSMUSG00000015790.17	ENSMUST00000015934.13	1173	9	190	6	5	-6	multi-exon	FALSE	canonical	3	328	junction_4	27.1834048639974	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAACCATGGCTCAGTCT	NA	False	NA	-11	True	AATAAA	-13	NA	26806352	26803400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUSG00000015790.17_1	chr2	-	1048	8	NIC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	5	-6	intron_retention	FALSE	canonical	3	328	junction_3	29.0460577254084	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAACCATGGCTCAGTCT	NA	False	NA	-11	True	AATAAA	-13	NA	26806352	26803400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUSG00000015790.17_12	chr2	-	2951	1	NIC	ENSMUSG00000015790.17	novel	1151	9	NA	NA	6	-6	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAACCATGGCTCAGTCT	NA	False	NA	-11	True	AATAAA	-13	NA	26806351	26803400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26803400_26806400
ENSMUSG00000015790.17_4	chr2	-	1003	9	NIC	ENSMUSG00000015790.17	novel	1151	9	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	15	junction_7	115.533544912289	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCATGGCTCAGTCTG	NA	False	NA	-10	True	AATAAA	-14	NA	26806357	26803399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805762_26805966_26806019_26806268
ENSMUSG00000015790.17_6	chr2	-	1009	9	FSM	ENSMUSG00000015790.17	ENSMUST00000167661.7	1151	9	137	5	1	-5	multi-exon	FALSE	canonical	3	32	junction_7	110.059571937201	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCATGGCTCAGTCTG	NA	False	NA	-10	True	AATAAA	-14	NA	26806343	26803399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
ENSMUSG00000015804.15_1	chr5	+	795	4	FSM	ENSMUSG00000015804.15	ENSMUST00000156481.8	4560	4	89	3676	15	2	multi-exon	FALSE	canonical	3	1736	junction_3	82.366390124991	588	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTGTTTGTATT	7421	False	NA	24	True	AGTAAA	-13	NA	45677659	45682942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_45677827_45679777_45679845_45680763_45680877_45682494
ENSMUSG00000015806.13_1	chr5	-	1323	7	FSM	ENSMUSG00000015806.13	ENSMUST00000015950.12	1380	7	56	1	-4	-1	multi-exon	FALSE	canonical	3	819	junction_4	94.8542741964395	704	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTTTTTCACTC	NA	False	NA	-20	True	AATAAA	-14	NA	45607522	45591395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
ENSMUSG00000015837.16_0	chr11	-	1881	8	FSM	ENSMUSG00000015837.16	ENSMUST00000015981.12	2673	8	1	791	1	-5	multi-exon	TRUE	canonical	3	390	junction_1	128.516496201532	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAGCCCTGTGATCCGTA	NA	False	NA	-19	True	AATAAA	-17	NA	50101617	50090983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_50091775_50093339_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
ENSMUSG00000015837.16_1	chr11	-	1995	8	FSM	ENSMUSG00000015837.16	ENSMUST00000102774.11	2037	8	37	5	1	-5	multi-exon	FALSE	canonical	0	0	junction_1	263.494104027287	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAGCCCTGTGATCCGTA	NA	False	NA	-19	True	AATAAA	-17	NA	50101617	50090983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_50091775_50093225_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
ENSMUSG00000015839.7_0	chr2	-	2354	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	113	8	-39	-8	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	770	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTACTTTGGACTTTT	NA	False	NA	-7	True	AATAAA	-14	NA	75534872	75505864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
ENSMUSG00000015846.16_0	chr2	+	2084	10	FSM	ENSMUSG00000015846.16	ENSMUST00000077257.12	4905	10	60	2761	-1	13	multi-exon	FALSE	canonical	3	51	junction_1	15.024260216787	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCCTGAGATATCACTCC	NA	False	NA	7	True	TATAAA	-15	NA	27567272	27650208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_27567473_27627310_27627577_27631064_27631216_27631775_27631956_27638623_27638794_27642323_27642454_27644234_27644368_27646210_27646303_27647772_27647879_27649552
ENSMUSG00000015846.16_1	chr2	+	1715	9	ISM	ENSMUSG00000015846.16	ENSMUST00000238913.2	1631	10	12245	-504	-2737	9	3prime_fragment	FALSE	canonical	3	68	junction_1	10.5800519847494	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGCCCTGAGATATCA	2278	False	NA	3	True	TATAAA	-11	NA	27627475	27650204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27627577_27631064_27631216_27631775_27631956_27638623_27638794_27642323_27642454_27644234_27644368_27646210_27646303_27647772_27647879_27649552
ENSMUSG00000015846.16_2	chr2	+	1863	9	NIC	ENSMUSG00000015846.16	novel	673	4	NA	NA	33	9	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	28.6879765755621	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGCCCTGAGATATCA	5048	False	NA	3	True	TATAAA	-11	NA	27630245	27650204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_27630495_27631064_27631216_27631775_27631956_27638623_27638794_27642323_27642454_27644234_27644368_27646210_27646303_27647772_27647879_27649552
ENSMUSG00000015846.16_3	chr2	+	2151	8	ISM	ENSMUSG00000015846.16	ENSMUST00000238913.2	1631	10	15297	-504	315	9	3prime_fragment	FALSE	canonical	3	73	junction_2	8.39825054668518	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGCCCTGAGATATCA	5330	False	NA	3	True	TATAAA	-11	NA	27630527	27650204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27631216_27631775_27631956_27638623_27638794_27642323_27642454_27644234_27644368_27646210_27646303_27647772_27647879_27649552
ENSMUSG00000015846.16_4	chr2	+	2889	7	ISM	ENSMUSG00000015846.16	ENSMUST00000238913.2	1631	10	16598	-1983	1616	254	3prime_fragment	FALSE	canonical	3	73	junction_1	8.59586463881842	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGCTCAATTAAGGTGAT	6631	False	NA	NA	False	NA	NA	NA	27631828	27651683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27631956_27638623_27638794_27642323_27642454_27644234_27644368_27646210_27646303_27647772_27647879_27649552
ENSMUSG00000015846.16_9	chr2	+	2725	1	ISM	ENSMUSG00000015846.16	ENSMUST00000077257.12	4905	10	83028	4	20028	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCTGTCCTGTGTTGGG	NA	False	NA	24	True	AATATA	-14	NA	27650240	27652965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27650200_27653000
ENSMUSG00000015850.12_0	chr3	-	3995	18	FSM	ENSMUSG00000015850.12	ENSMUST00000117782.8	4036	18	38	3	-14	0	multi-exon	TRUE	canonical	1	3	junction_17	6.21918006589627	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGCTCTTCGTTATGT	NA	False	NA	NA	False	ATTAAA	-15	NA	95595190	95583513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95584280_95584420_95584566_95584837_95585018_95585117_95585316_95586897_95587075_95587300_95587506_95587754_95587885_95588046_95588233_95588333_95588446_95588569_95588743_95588961_95589167_95589519_95589657_95590617_95590721_95590942_95591550_95591670_95592009_95592268_95592327_95592765_95592982_95595131
ENSMUSG00000015850.12_10	chr3	-	2980	14	ISM	ENSMUSG00000015850.12	ENSMUST00000015994.4	3856	18	3962	2	-3801	-2	3prime_fragment	FALSE	canonical	1	4	junction_7	6.63146524992379	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACATGCTCTTCGTTAT	NA	False	NA	NA	False	ATTAAA	-13	NA	95591207	95583515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95584280_95584420_95584566_95584837_95585018_95585117_95585316_95586897_95587075_95587300_95587506_95587754_95587885_95588046_95588233_95588333_95588446_95588569_95588743_95588961_95589167_95589519_95589657_95590617_95590721_95590942
ENSMUSG00000015850.12_11	chr3	-	3559	15	ISM	ENSMUSG00000015850.12	ENSMUST00000015994.4	3856	18	3262	2	3262	-2	3prime_fragment	FALSE	canonical	1	4	junction_7	6.51097973755541	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACATGCTCTTCGTTAT	NA	False	NA	NA	False	ATTAAA	-13	NA	95591907	95583515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95584280_95584420_95584566_95584837_95585018_95585117_95585316_95586897_95587075_95587300_95587506_95587754_95587885_95588046_95588233_95588333_95588446_95588569_95588743_95588961_95589167_95589519_95589657_95590617_95590721_95590942_95591550_95591670
ENSMUSG00000015850.12_3	chr3	-	3879	18	FSM	ENSMUSG00000015850.12	ENSMUST00000015994.4	3856	18	-24	1	-17	-1	multi-exon	FALSE	canonical	1	3	junction_17	6.21918006589627	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACATGCTCTTCGTTATG	NA	False	NA	NA	False	ATTAAA	-14	NA	95595193	95583514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95584280_95584420_95584566_95584837_95585018_95585117_95585316_95586897_95587075_95587300_95587506_95587754_95587885_95588046_95588233_95588333_95588446_95588569_95588743_95588961_95589167_95589519_95589657_95590617_95590721_95590942_95591550_95591670_95592009_95592268_95592327_95592765_95592864_95595131
ENSMUSG00000015850.12_5	chr3	-	1027	3	ISM	ENSMUSG00000015850.12	ENSMUST00000015994.4	3856	18	10216	0	-492	0	3prime_fragment	FALSE	canonical	3	22	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGCTCTTCGTTATGT	NA	False	NA	NA	False	ATTAAA	-15	NA	95584953	95583513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95584280_95584420_95584566_95584837
ENSMUSG00000015850.12_8	chr3	-	2456	11	ISM	ENSMUSG00000015850.12	ENSMUST00000015994.4	3856	18	6020	4	-1743	-4	3prime_fragment	FALSE	canonical	1	4	junction_7	6.71192967781993	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAACATGCTCTTCGTT	NA	False	NA	NA	False	ATTAAA	-11	NA	95589149	95583517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95584280_95584420_95584566_95584837_95585018_95585117_95585316_95586897_95587075_95587300_95587506_95587754_95587885_95588046_95588233_95588333_95588446_95588569_95588743_95588961
ENSMUSG00000015869.17_1	chr11	-	1809	10	FSM	ENSMUSG00000015869.17	ENSMUST00000106391.8	1841	10	20	12	-1	-12	multi-exon	FALSE	canonical	3	803	junction_5	49.0028973696177	977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTCTTCAGTCGGCTG	NA	False	NA	-19	True	AATAAA	-15	NA	116381154	116361682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873
ENSMUSG00000015869.17_2	chr11	-	1829	10	NIC	ENSMUSG00000015869.17	novel	1841	10	NA	NA	3	-11	combination_of_known_junctions	FALSE	canonical	3	32	junction_7	270.156790323739	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTCTTCAGTCGGCTGC	NA	False	NA	-18	True	AATAAA	-16	NA	116381158	116361681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370666_116376694_116376762_116378943_116378997_116380873
ENSMUSG00000015879.9_0	chr5	-	1699	4	ISM	ENSMUSG00000015879.9	ENSMUST00000016023.9	4236	16	105181	13	2109	-13	3prime_fragment	FALSE	canonical	2	3	junction_1	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCCACACTACCACCAC	NA	False	NA	NA	False	AATAAA	-29	NA	45691775	45687059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_45688173_45689099_45689300_45690072_45690178_45691494
ENSMUSG00000015880.14_0	chr5	+	3273	21	FSM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	6	424	6	-5	multi-exon	FALSE	canonical	3	453	junction_14	43.4953733171702	811	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCATTCCTATACTCAGTA	NA	False	NA	13	True	ATTAAA	-20	NA	45827266	45857464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
ENSMUSG00000015882.19_0	chr5	-	5580	7	FSM	ENSMUSG00000015882.19	ENSMUST00000045586.13	5708	7	116	12	2	-9	multi-exon	FALSE	canonical	3	11	junction_1	22.5197444232586	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCTTGAATTTCAGAT	NA	False	NA	-16	True	AATAAA	-9	NA	46014841	45854534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_45859340_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
ENSMUSG00000015882.19_10	chr5	-	6964	7	ISM	ENSMUSG00000015882.19	ENSMUST00000238522.2	10477	8	118	24371	4	-1885	5prime_fragment	FALSE	canonical	3	10	junction_1	22.8691932520585	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTGTTTCATTTTCACC	NA	False	NA	NA	False	AATAAA	-16	NA	46014839	45878893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_45885085_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
ENSMUSG00000015882.19_13	chr5	-	4910	7	FSM	ENSMUSG00000015882.19	ENSMUST00000016026.14	4884	7	16	-42	4	-14	multi-exon	FALSE	canonical	3	22	junction_1	18.7349939951952	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAGTAAACTTGAC	NA	False	NA	NA	False	AGTAAA	-3	NA	46014839	45887690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_45891828_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
ENSMUSG00000015882.19_14	chr5	-	2814	1	Genic_Genomic	ENSMUSG00000015882.19	novel	NA	NA	NA	NA	-5566	4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATACTGAGTTCTTTGAG	NA	False	NA	NA	False	AGTAAA	-21	NA	45890486	45887672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_-_45887700_45890500
ENSMUSG00000015882.19_2	chr5	-	2886	1	ISM	ENSMUSG00000015882.19	ENSMUST00000045586.13	5708	7	157544	5	27507	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATTTCAGATGTTTTTC	79	False	NA	-9	True	AATAAA	-16	NA	45857413	45854527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_45854500_45857400
ENSMUSG00000015882.19_28	chr5	-	4847	6	NIC	ENSMUSG00000015882.19	novel	4884	7	NA	NA	-1	-14	combination_of_known_splicesites	FALSE	canonical	3	9	junction_4	27.5782523014059	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAGTAAACTTGAC	NA	False	NA	NA	False	AGTAAA	-3	NA	46014856	45887690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_45891828_45893072_45893167_45904397_45904650_45932733_45932864_45952634_45952701_46014688
ENSMUSG00000015882.19_3	chr5	-	2919	6	FSM	ENSMUSG00000015882.19	ENSMUST00000190036.7	5463	6	-30	2574	4	692	multi-exon	FALSE	canonical	3	25	junction_1	19.1562000407179	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTGTGTAATAGCCTGA	NA	False	NA	NA	False	AATAAA	-23	NA	46014839	45857099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_45859340_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
ENSMUSG00000015882.19_7	chr5	-	7089	8	FSM	ENSMUSG00000015882.19	ENSMUST00000238522.2	10477	8	118	3270	4	-1	multi-exon	FALSE	canonical	3	6	junction_1	27.9175169938525	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAGAAAAGGGACTACTT	NA	False	NA	NA	False	AATAAA	-22	NA	46014839	45857792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_45859340_45880315_45885085_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
ENSMUSG00000015889.9_0	chr10	+	1995	19	FSM	ENSMUSG00000015889.9	ENSMUST00000016033.9	2029	19	29	5	-11	-5	multi-exon	FALSE	canonical	3	348	junction_6	42.1416262935671	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATTTTAAAGTGTCAT	NA	False	NA	16	True	AATACA	-15	NA	93289301	93320731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
ENSMUSG00000015889.9_2	chr10	+	1922	18	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	19	-5	combination_of_known_junctions	FALSE	canonical	3	56	junction_16	100.405509988178	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATTTTAAAGTGTCAT	NA	False	NA	16	True	AATACA	-15	NA	93289291	93320731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
ENSMUSG00000015932.9_0	chr2	+	1678	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	230	3	230	-3	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	1362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCCTTTCTTTGTGTGGT	NA	False	NA	NA	False	AATAAA	-16	NA	143757469	143785241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
ENSMUSG00000015932.9_14	chr2	+	1006	1	ISM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	26998	1	26998	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTTTCTTTGTGTGGTTA	NA	False	NA	NA	False	AATAAA	-18	NA	143784237	143785243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_143784200_143785200
ENSMUSG00000015937.16_0	chr13	-	1901	9	NIC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	37	-1	combination_of_known_junctions	FALSE	canonical	3	847	junction_5	145.981109651215	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGACTGGCCGTGTTTTGTG	6043	False	NA	-9	True	AGTAAA	-14	NA	56283306	56221435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ENSMUSG00000015937.16_1	chr13	-	1903	9	FSM	ENSMUSG00000015937.16	ENSMUST00000016081.13	2046	9	138	5	37	-2	multi-exon	FALSE	canonical	3	557	junction_5	233.718279933342	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGACTGGCCGTGTTTTGT	6043	False	NA	-10	True	AGTAAA	-13	NA	56283306	56221436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ENSMUSG00000015942.10_0	chr5	+	3469	16	FSM	ENSMUSG00000015942.10	ENSMUST00000016086.10	3482	16	6	7	6	-7	multi-exon	FALSE	canonical	1	3	junction_8	3.05505046330389	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGTGTGTGTGTTTGT	NA	False	NA	3	True	AATAAA	-10	NA	134212871	134246981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_134213098_134220018_134220117_134221491_134221631_134223699_134223817_134225262_134225447_134226088_134226118_134230244_134230300_134231079_134231124_134232111_134232190_134235611_134235669_134237720_134237784_134240038_134240117_134241893_134241978_134242808_134242993_134243482_134243512_134244977
ENSMUSG00000015942.10_4	chr5	+	4945	15	ISM	ENSMUSG00000015942.10	ENSMUST00000016086.10	3482	16	-4	7	-4	-7	intron_retention	FALSE	canonical	1	3	junction_8	3.15015386731428	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGTGTGTGTGTTTGT	NA	False	NA	3	True	AATAAA	-10	NA	134212861	134246981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_134213098_134220018_134220117_134221491_134221631_134223699_134223817_134225262_134225447_134226088_134226118_134230244_134230300_134231079_134231124_134232111_134232190_134235611_134235669_134237720_134237784_134240038_134240117_134241893_134241978_134242808_134242993_134243482
ENSMUSG00000015942.10_7	chr5	+	1682	1	ISM	ENSMUSG00000015942.10	ENSMUST00000016086.10	3482	16	32434	7	2348	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGTGTGTGTGTTTGT	NA	False	NA	3	True	AATAAA	-10	NA	134245299	134246981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_134245300_134247000
ENSMUSG00000015942.10_8	chr5	+	3091	14	ISM	ENSMUSG00000015942.10	ENSMUST00000016086.10	3482	16	8680	7	-5312	-7	3prime_fragment	FALSE	canonical	1	3	junction_6	2.3153718374296	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGTGTGTGTGTTTGT	NA	False	NA	3	True	AATAAA	-10	NA	134221545	134246981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_134221631_134223699_134223817_134225262_134225447_134226088_134226118_134230244_134230300_134231079_134231124_134232111_134232190_134235611_134235669_134237720_134237784_134240038_134240117_134241893_134241978_134242808_134242993_134243482_134243512_134244977
ENSMUSG00000015943.12_0	chr3	-	777	1	NIC	ENSMUSG00000015943.12	novel	729	2	NA	NA	9	62	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCTTATTCCTTGATTT	NA	False	NA	-8	True	AATAAA	-14	NA	96104893	96104116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_96104100_96104900
ENSMUSG00000015943.12_1	chr3	-	518	2	FSM	ENSMUSG00000015943.12	ENSMUST00000016087.4	729	2	-7	218	-7	57	multi-exon	FALSE	canonical	3	441	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTACTACCTTATTCCTT	NA	False	NA	-13	True	AATAAA	-9	NA	96104909	96104121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_96104596_96104865
ENSMUSG00000015944.10_0	chr5	+	4772	9	FSM	ENSMUSG00000015944.10	ENSMUST00000016088.9	7367	9	6	2589	6	-2576	multi-exon	FALSE	canonical	3	5	junction_3	2.20439901106855	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134128555	134170593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_134128991_134154710_134154782_134163989_134164184_134164418_134164552_134164943_134165068_134165888_134166000_134166302_134166386_134166874_134166970_134167067
ENSMUSG00000015944.10_2	chr5	+	1702	1	ISM	ENSMUSG00000015944.10	ENSMUST00000016088.9	7367	9	42911	20	7664	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAATGATGTTGCCTGA	NA	False	NA	NA	False	ATTAAA	-8	NA	134171460	134173162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_134171500_134173200
ENSMUSG00000015944.10_4	chr5	+	2940	1	ISM	ENSMUSG00000015944.10	ENSMUST00000016088.9	7367	9	39106	2587	3859	-2574	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134167655	134170595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_134167700_134170600
ENSMUSG00000015957.13_0	chr7	+	1926	6	NIC	ENSMUSG00000015957.13	novel	3451	7	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	6.20966987850401	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAGTGTGTGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	98484319	98503019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_98484556_98488214_98488398_98495580_98495817_98496380_98496659_98499433_98499727_98502319
ENSMUSG00000015957.13_3	chr7	+	1761	6	NIC	ENSMUSG00000015957.13	novel	3451	7	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	8.48528137423857	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAGTGTGTGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	98484320	98503019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_98484556_98488214_98488398_98495580_98495817_98496380_98496495_98499433_98499727_98502319
ENSMUSG00000015957.13_4	chr7	+	1693	5	FSM	ENSMUSG00000015957.13	ENSMUST00000167303.8	1792	5	160	-61	107	1	multi-exon	FALSE	canonical	3	14	junction_3	5.21416340365355	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAGTGTGTGAAATAAA	1314	False	NA	NA	False	NA	NA	NA	98488211	98503019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_98488398_98495580_98495817_98496380_98496659_98499433_98499727_98502319
ENSMUSG00000015961.9_0	chr1	-	2528	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	25	218	15	-4	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	1508	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATGCTTTGTGTGTTGTT	NA	False	NA	-7	True	ATTAAA	-18	NA	177624052	177590745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
ENSMUSG00000015971.6_0	chr14	+	2041	13	FSM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	67	11	-1	-11	multi-exon	FALSE	canonical	3	289	junction_4	26.6816364232448	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTTAAAGTATGACACTGA	NA	False	NA	10	True	ATTAAA	-14	NA	29700360	29715165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
ENSMUSG00000015971.6_2	chr14	+	2300	14	NNC	ENSMUSG00000015971.6	novel	2328	14	NA	NA	1	-1257	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_13	85.8768900035766	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGTTTGCTACTTACC	NA	False	NA	2	True	ATTAAA	-15	NA	29700362	29716567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917_29715103_29716243
ENSMUSG00000015971.6_7	chr14	+	2674	12	NIC	ENSMUSG00000015971.6	novel	2119	13	NA	NA	-6	-6	intron_retention	FALSE	canonical	3	289	junction_4	27.7366601098544	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTATGACACTGATTTGA	NA	False	NA	15	True	ATTAAA	-19	NA	29700355	29715170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29713713_29714917
ENSMUSG00000015980.15_3	chr7	+	1439	9	NIC	ENSMUSG00000015980.15	novel	351	4	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	3.53553390593274	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGTTCTCTTCTGTCGC	NA	False	NA	NA	False	ATTAAA	-24	NA	138800529	138822892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_138800555_138801309_138801369_138803504_138803658_138805916_138806278_138807835_138807983_138810118_138810213_138816785_138816905_138818491_138818616_138822535
ENSMUSG00000015980.15_5	chr7	+	1176	6	ISM	ENSMUSG00000015980.15	ENSMUST00000016124.15	2113	11	13034	8	5124	0	3prime_fragment	FALSE	canonical	2	2	junction_2	3.72021504754765	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAAACTGTTCTCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	138805937	138822887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_138806278_138807835_138807983_138810118_138810213_138816785_138816905_138818491_138818616_138822535
ENSMUSG00000015980.15_6	chr7	+	727	4	FSM	ENSMUSG00000015980.15	ENSMUST00000126213.8	744	4	17	0	17	0	multi-exon	FALSE	canonical	2	4	junction_1	3.55902608401044	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAAACTGTTCTCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	138813875	138822887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_138814008_138816785_138816905_138818491_138818616_138822535
ENSMUSG00000015994.11_0	chr8	-	1622	9	FSM	ENSMUSG00000015994.11	ENSMUST00000016138.11	1930	9	56	252	56	146	multi-exon	FALSE	canonical	3	814	junction_5	99.1573875210516	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACAATTCCATAGTGTT	NA	False	NA	NA	False	AATAAA	-13	NA	26505622	26489001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26489593_26489796_26489969_26490997_26491061_26494443_26494593_26497214_26497342_26499692_26499798_26501117_26501233_26503497_26503584_26505408
ENSMUSG00000016018.5_0	chr13	-	3313	27	FSM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	18	358	-8	79	multi-exon	TRUE	canonical	3	524	junction_21	59.6473487509525	1042	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTTTAGTGACAGGCTT	7254	False	NA	-26	True	AATAAA	-17	NA	113063914	113004309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
ENSMUSG00000016024.10_0	chr2	+	1873	15	FSM	ENSMUSG00000016024.10	ENSMUST00000016168.9	2525	15	111	541	-8	-541	multi-exon	FALSE	canonical	1	2	junction_3	1.75691055374984	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAACATCCCAGCTGAAC	NA	False	NA	NA	False	NA	NA	NA	158148523	158174231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_158148714_158150600_158150716_158151520_158151650_158155392_158155549_158156072_158156137_158159456_158159521_158161591_158161684_158162183_158162361_158163974_158164035_158166428_158166597_158167626_158167695_158168147_158168191_158169436_158169501_158170265_158170343_158173825
ENSMUSG00000016028.12_12	chr15	-	4666	20	ISM	ENSMUSG00000016028.12	ENSMUST00000226840.2	6802	34	50773	0	-5535	0	3prime_fragment	FALSE	canonical	3	17	junction_3	10.8428717153719	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCGTGCTGTGCTGGGTGG	9714	False	NA	-6	True	AATAAA	-20	NA	85812158	85783130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_85784940_85785137_85785400_85785639_85785871_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596_85809781_85810286_85810497_85811131_85811227_85812098
ENSMUSG00000016028.12_17	chr15	-	11166	35	NIC	ENSMUSG00000016028.12	novel	11305	35	NA	NA	135	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	11.6555598803561	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCGTGCTGTGCTGGGTGG	NA	False	NA	-6	True	AATAAA	-20	NA	85918269	85783130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_85784907_85785137_85785400_85785639_85785871_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596_85809781_85810286_85810497_85811131_85811227_85812098_85812201_85812515_85812700_85813601_85813723_85814032_85814175_85814713_85814889_85815442_85815557_85816484_85816671_85822044_85822212_85823302_85823429_85823747_85823912_85825317_85825476_85843328_85843418_85844267_85844384_85847284_85847508_85862802_85863442_85914382
ENSMUSG00000016028.12_22	chr15	-	4236	17	NIC	ENSMUSG00000016028.12	novel	6802	34	NA	NA	-3090	-1	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	8.84943501021393	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCCGTGCTGTGCTGGGTG	1971	False	NA	-7	True	AATAAA	-19	NA	85809713	85783131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_85784940_85785137_85785400_85785639_85785874_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596
ENSMUSG00000016028.12_25	chr15	-	1283	1	ISM	ENSMUSG00000016028.12	ENSMUST00000016172.10	11305	35	133990	2	1360	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCCGTGCTGTGCTGGGTG	5784	False	NA	-7	True	AATAAA	-19	NA	85784414	85783131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_85783100_85784400
ENSMUSG00000016028.12_32	chr15	-	2175	3	ISM	ENSMUSG00000016028.12	ENSMUST00000239489.2	908	4	655	-1480	29	-2	3prime_fragment	FALSE	canonical	3	26	junction_1	13.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACCCGTGCTGTGCTGGGT	4453	False	NA	-8	True	AATAAA	-18	NA	85785745	85783132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_85784940_85785137_85785400_85785639
ENSMUSG00000016028.12_36	chr15	-	9176	35	FSM	ENSMUSG00000016028.12	ENSMUST00000016172.10	11305	35	2128	1	2128	0	multi-exon	TRUE	canonical	3	19	junction_1	10.8831478247056	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCGTGCTGTGCTGGGTGG	NA	False	NA	-6	True	AATAAA	-20	NA	85916276	85783130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_85784907_85785137_85785400_85785639_85785874_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596_85809781_85810286_85810497_85811131_85811227_85812098_85812201_85812515_85812700_85813601_85813723_85814032_85814175_85814713_85814889_85815442_85815557_85816484_85816671_85822044_85822212_85823302_85823429_85823747_85823912_85825317_85825476_85843328_85843418_85844267_85844384_85847284_85847508_85862802_85863442_85914382
ENSMUSG00000016028.12_37	chr15	-	2511	5	ISM	ENSMUSG00000016028.12	ENSMUST00000016172.10	11305	35	131660	7	-344	-6	3prime_fragment	FALSE	canonical	3	19	junction_1	13.3135269556943	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTACCCGTGCTGTGCT	3454	False	NA	-12	True	AATAAA	-14	NA	85786744	85783136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_85784907_85785137_85785400_85785639_85785874_85786315_85786466_85786649
ENSMUSG00000016028.12_40	chr15	-	3567	13	ISM	ENSMUSG00000016028.12	ENSMUST00000226840.2	6802	34	59727	1	3419	-1	3prime_fragment	FALSE	canonical	3	17	junction_3	11.8074835027057	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCCGTGCTGTGCTGGGTG	8480	False	NA	-7	True	AATAAA	-19	NA	85803204	85783131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_85784940_85785137_85785400_85785639_85785871_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109
ENSMUSG00000016028.12_5	chr15	-	9559	35	NIC	ENSMUSG00000016028.12	novel	6802	34	NA	NA	1775	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	11.3216575993027	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCGTGCTGTGCTGGGTGG	NA	False	NA	-6	True	AATAAA	-20	NA	85916629	85783130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_85784940_85785137_85785400_85785639_85785871_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596_85809781_85810286_85810497_85811131_85811227_85812098_85812201_85812515_85812700_85813601_85813723_85814032_85814175_85814713_85814889_85815442_85815557_85816484_85816671_85822044_85822212_85823302_85823429_85823747_85823912_85825317_85825476_85843328_85843418_85844267_85844384_85847284_85847508_85862802_85863442_85914382
ENSMUSG00000016028.12_8	chr15	-	11149	35	NIC	ENSMUSG00000016028.12	novel	11305	35	NA	NA	188	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_34	10.511527697384	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCGTGCTGTGCTGGGTGG	NA	False	NA	-6	True	AATAAA	-20	NA	85918216	85783130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_85784940_85785137_85785400_85785639_85785874_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596_85809781_85810286_85810497_85811131_85811227_85812098_85812201_85812515_85812700_85813601_85813723_85814032_85814175_85814713_85814889_85815442_85815557_85816484_85816671_85822044_85822212_85823302_85823429_85823747_85823912_85825317_85825476_85843328_85843418_85844267_85844384_85847284_85847508_85862802_85863442_85914382
ENSMUSG00000016181.10_0	chr1	-	2638	12	FSM	ENSMUSG00000016181.11	ENSMUST00000085555.7	5570	12	45	2887	17	464	multi-exon	FALSE	canonical	3	56	junction_4	6.18449140061635	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTTATTTTATGCGTAT	NA	False	NA	-19	True	NA	NA	NA	192812535	192789596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_192790095_192796064_192796311_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
ENSMUSG00000016181.10_19	chr1	-	1568	7	ISM	ENSMUSG00000016181.11	ENSMUST00000085555.7	5570	12	9865	2880	2064	471	3prime_fragment	FALSE	canonical	3	56	junction_4	7.06320670013903	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGCGTATTGGTGCT	NA	False	NA	-12	True	NA	NA	NA	192802715	192789589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_192790095_192796064_192796311_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617
ENSMUSG00000016181.10_23	chr1	-	2622	12	FSM	ENSMUSG00000016181.11	ENSMUST00000195291.6	5504	12	11	2871	11	464	multi-exon	FALSE	canonical	2	5	junction_2	17.8908536584507	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTTATTTTATGCGTAT	NA	False	NA	-19	True	NA	NA	NA	192812541	192789596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_192790095_192796064_192796289_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
ENSMUSG00000016181.10_3	chr1	-	3005	11	ISM	ENSMUSG00000016181.11	ENSMUST00000085555.7	5570	12	756	2322	691	1029	3prime_fragment	FALSE	canonical	3	56	junction_4	6.43117407632541	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAAGAAGCATTATTT	NA	False	NA	NA	False	AAGAAA	-14	NA	192811824	192789031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_192790095_192796064_192796311_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798
ENSMUSG00000016181.10_7	chr1	-	416	1	ISM	ENSMUSG00000016181.11	ENSMUST00000085555.7	5570	12	22585	2870	6988	481	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGTGCTTTGCCTGCGT	NA	False	NA	-2	True	NA	NA	NA	192789995	192789579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_192789600_192790000
ENSMUSG00000016181.10_8	chr1	-	2286	10	ISM	ENSMUSG00000016181.11	ENSMUST00000085555.7	5570	12	1867	2874	-60	477	3prime_fragment	FALSE	canonical	3	56	junction_4	6.52819147625261	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTATTGGTGCTTTGCCT	NA	False	NA	-6	True	NA	NA	NA	192810713	192789583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_192790095_192796064_192796311_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574
ENSMUSG00000016200.15_0	chr1	-	4180	1	ISM	ENSMUSG00000016200.15	ENSMUST00000215093.2	9274	9	140357	6	140226	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAATGTTACGTTTCTTC	NA	False	NA	NA	False	AATAAA	-12	NA	192577726	192573546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_192573500_192577700
ENSMUSG00000016200.15_1	chr1	-	7843	8	FSM	ENSMUSG00000016200.15	ENSMUST00000195354.6	7882	8	36	3	-22	-3	multi-exon	FALSE	canonical	3	7	junction_1	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTACGTTTCTTCACA	164	False	NA	NA	False	AATAAA	-15	NA	192718047	192573543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_192579929_192584059_192584250_192612785_192613236_192615421_192615694_192662653_192662870_192669025_192669191_192709277_192709326_192717930
ENSMUSG00000016200.15_2	chr1	-	9210	9	FSM	ENSMUSG00000016200.15	ENSMUST00000215093.2	9274	9	52	12	-6	-12	multi-exon	FALSE	canonical	2	2	junction_5	6.65206734782504	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGCATTAAATGTTACGT	180	False	NA	NA	False	AATAAA	-6	NA	192718031	192573552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_192579929_192584059_192584250_192612785_192613236_192615421_192615694_192662653_192662870_192665827_192667220_192669025_192669191_192709277_192709326_192717930
ENSMUSG00000016200.15_3	chr1	-	6864	5	FSM	ENSMUSG00000016200.15	ENSMUST00000195530.6	2078	5	-37	-4749	18	-4	multi-exon	FALSE	canonical	0	0	junction_2	9.40744386111339	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTTACGTTTCTTCAC	204	False	NA	NA	False	AATAAA	-14	NA	192718007	192573544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_192579929_192584059_192584250_192669025_192669191_192709277_192709326_192717930
ENSMUSG00000016200.15_6	chr1	-	3075	7	ISM	ENSMUSG00000016200.15	ENSMUST00000215093.2	9274	9	47	38819	-11	11	5prime_fragment	FALSE	canonical	2	2	junction_3	7.41057802513857	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTCCTTGTTACACTT	175	False	NA	NA	False	AGTAAA	-8	NA	192718036	192612359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_192613236_192615421_192615694_192662653_192662870_192665827_192667220_192669025_192669191_192709277_192709326_192717930
ENSMUSG00000016239.12_1	chrX	+	7352	11	FSM	ENSMUSG00000119926.1_ENSMUSG00000016239.12	ENSMUST00000016383.10	2911	11	73	-4514	73	2853	multi-exon	FALSE	canonical	3	28	junction_3	7.36478105580879	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTGTCTACCAAAGTG	NA	False	NA	6	True	ATTAAA	-15	NA	35592078	35630508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_35593053_35596168_35596288_35598864_35598988_35605275_35605520_35606294_35606386_35614654_35614770_35617494_35617617_35619698_35619858_35621138_35621302_35622258_35622409_35625416
ENSMUSG00000016239.12_12	chrX	+	6008	8	ISM	ENSMUSG00000119926.1_ENSMUSG00000016239.12	ENSMUST00000016383.10	2911	11	13399	-4515	12536	2854	3prime_fragment	FALSE	canonical	3	31	junction_4	6.8332918532008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTCTACCAAAGTGT	NA	False	NA	7	True	ATTAAA	-16	NA	35605404	35630509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_35605520_35606294_35606386_35614654_35614770_35617494_35617617_35619698_35619858_35621138_35621302_35622258_35622409_35625416
ENSMUSG00000016239.12_6	chrX	+	5611	5	ISM	ENSMUSG00000119926.1_ENSMUSG00000016239.12	ENSMUST00000016383.10	2911	11	25564	-4514	-9982	2853	3prime_fragment	FALSE	canonical	3	31	junction_1	7.42882897905181	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTGTCTACCAAAGTG	NA	False	NA	6	True	ATTAAA	-15	NA	35617569	35630508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_35617617_35619698_35619858_35621138_35621302_35622258_35622409_35625416
ENSMUSG00000016239.12_8	chrX	+	5208	2	ISM	ENSMUSG00000119926.1_ENSMUSG00000016239.12	ENSMUST00000016383.10	2911	11	30285	-4512	-5261	2851	3prime_fragment	FALSE	canonical	3	46	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTCTGTGTCTACCAAAG	NA	False	NA	4	True	ATTAAA	-13	NA	35622290	35630506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_35622409_35625416
ENSMUSG00000016239.12_9	chrX	+	3009	12	NIC	ENSMUSG00000016239.12	novel	2911	11	NA	NA	56	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	15.6437614635123	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTCATACTTCTTTC	NA	False	NA	NA	False	TATAAA	-13	NA	35592061	35625992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_35593053_35596168_35596288_35598864_35598988_35603172_35603329_35605275_35605520_35606294_35606386_35614654_35614770_35617494_35617617_35619698_35619858_35621138_35621302_35622258_35622409_35625416
ENSMUSG00000016252.8_0	chr2	-	1717	2	FSM	ENSMUSG00000016252.8	ENSMUST00000149191.2	1697	2	-21	1	19	-1	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGGTTTTGTTTCTGT	NA	False	NA	-8	True	AATAAA	-18	NA	174305863	174302868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_174303015_174304292
ENSMUSG00000016252.8_1	chr2	-	393	3	FSM	ENSMUSG00000016252.8	ENSMUST00000016396.8	421	3	25	3	9	0	multi-exon	FALSE	canonical	0	0	junction_1	1326.5	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGGTTTTGTTTCTGTT	NA	False	NA	-7	True	AATAAA	-19	NA	174305873	174302867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_174303015_174304292_174304423_174305757
ENSMUSG00000016253.13_2	chr2	+	2225	15	FSM	ENSMUSG00000016253.13	ENSMUST00000109075.8	2279	15	49	5	2	-5	multi-exon	FALSE	canonical	3	502	junction_12	51.3083913254758	771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAGATATTTTACTCAT	NA	False	NA	35	True	AATAAA	-16	NA	174257645	174269290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ENSMUSG00000016253.13_5	chr2	+	2872	13	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	2	-5	intron_retention	FALSE	canonical	3	502	junction_10	48.356890810813	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAGATATTTTACTCAT	NA	False	NA	35	True	AATAAA	-16	NA	174257645	174269290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ENSMUSG00000016253.13_7	chr2	+	2093	14	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	3	-5	combination_of_known_splicesites	FALSE	canonical	3	18	junction_6	158.919241892815	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAGATATTTTACTCAT	NA	False	NA	35	True	AATAAA	-16	NA	174257646	174269290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ENSMUSG00000016256.11_0	chr2	-	1373	6	FSM	ENSMUSG00000016256.11	ENSMUST00000016400.9	1441	6	66	2	66	-2	multi-exon	FALSE	canonical	3	493	junction_4	13.5292276202302	457	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTTGTGTACTTTATTTA	5395	False	NA	-2	True	AGTAAA	-15	NA	174280766	174269287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280122_174280542
ENSMUSG00000016257.16_0	chr2	-	1391	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	137	25	-10	-25	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	605	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCACTCTTAACAGAACACT	NA	False	NA	-29	True	AATAAA	-20	NA	174314737	174306884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
ENSMUSG00000016262.15_0	chr1	-	3320	4	FSM	ENSMUSG00000016262.15	ENSMUST00000155579.8	3350	4	29	1	29	0	multi-exon	FALSE	canonical	2	5	junction_2	1.69967317119759	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGGTTTTTTAAAATTT	NA	False	NA	NA	False	ATTAAA	-14	NA	192538035	192526796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_192529524_192532058_192532175_192533259_192533452_192537750
ENSMUSG00000016262.15_1	chr1	-	2427	1	ISM	ENSMUSG00000016262.15	ENSMUST00000155579.8	3350	4	8839	3	4830	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTTGGTTTTTTAAAAT	NA	False	NA	NA	False	ATTAAA	-12	NA	192529225	192526798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_192526800_192529200
ENSMUSG00000016308.13_0	chrX	+	732	5	FSM	ENSMUSG00000016308.13	ENSMUST00000202812.2	719	5	-149	136	146	0	multi-exon	FALSE	canonical	3	845	junction_1	46.1702014290603	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTTCTGTCTTCCC	NA	False	NA	23	True	ATTAAA	-15	NA	36138156	36146903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
ENSMUSG00000016308.13_1	chrX	+	697	6	FSM	ENSMUSG00000016308.13	ENSMUST00000016452.11	1732	6	65	970	2	2	multi-exon	FALSE	canonical	3	837	junction_1	46.7435557055729	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTTTCTGTCTTCCCTT	NA	False	NA	25	True	ATTAAA	-17	NA	36138012	36146905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36138183_36138363_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
ENSMUSG00000016319.4_1	chrX	+	1223	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	17	0	-17	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	7040	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATACCCAAAACCAGTT	NA	False	NA	12	True	AATAAA	-14	NA	36059303	36062443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
ENSMUSG00000016344.15_10	chr2	+	661	4	ISM	ENSMUSG00000016344.15	ENSMUST00000108841.2	689	5	237	1	37	-1	3prime_fragment	FALSE	canonical	3	629	junction_1	111.05254011803	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCTGGTATGTTTGAAA	3662	False	NA	0	True	AATAAA	-16	NA	180829365	180830296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_14	chr2	+	670	3	FSM	ENSMUSG00000016344.15	ENSMUST00000138800.8	771	3	103	-2	103	2	multi-exon	FALSE	canonical	3	861	junction_2	3.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3728	False	NA	3	True	AATAAA	-19	NA	180829431	180830299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_3	chr2	+	770	4	FSM	ENSMUSG00000016344.15	ENSMUST00000146089.8	750	4	-21	1	-10	-1	multi-exon	FALSE	canonical	3	258	junction_1	285.921123544395	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCTGGTATGTTTGAAA	3415	False	NA	0	True	AATAAA	-16	NA	180829118	180830296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180829248_180829457_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_5	chr2	+	714	5	FSM	ENSMUSG00000016344.15	ENSMUST00000108841.2	689	5	-27	2	13	-2	multi-exon	TRUE	canonical	3	258	junction_1	248.035279748668	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCCTGGTATGTTTGAA	3398	False	NA	-1	True	AATAAA	-15	NA	180829101	180830295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180829248_180829457_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_6	chr2	+	813	5	FSM	ENSMUSG00000016344.15	ENSMUST00000016488.13	1160	5	79	268	-10	-1	multi-exon	FALSE	canonical	3	201	junction_1	270.955139275859	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCTGGTATGTTTGAAA	3415	False	NA	0	True	AATAAA	-16	NA	180829118	180830296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180829248_180829342_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_9	chr2	+	915	4	FSM	ENSMUSG00000016344.15	ENSMUST00000127971.8	1153	4	0	238	0	-1	multi-exon	TRUE	canonical	3	201	junction_1	312.789954371229	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCTGGTATGTTTGAAA	3385	False	NA	0	True	AATAAA	-16	NA	180829088	180830296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180829248_180829342_180829680_180829796_180829894_180829974
ENSMUSG00000016346.18_0	chr2	-	4738	1	ISM	ENSMUSG00000016346.18	ENSMUST00000149964.9	8209	17	54896	2	15103	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGACTGGCCTCTTCATTT	4652	False	NA	0	True	AGTAAA	-20	NA	180722111	180717373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_180717400_180722100
ENSMUSG00000016346.18_4	chr2	-	2924	7	FSM	ENSMUSG00000016346.18	ENSMUST00000123336.8	1686	7	-88	-1150	-4	1150	multi-exon	FALSE	canonical	3	10	junction_1	1.82574185835055	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGACCTAAAACAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	180777058	180749086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_180750911_180751467_180751579_180753792_180753919_180754855_180755032_180755364_180755492_180756431_180756523_180776589
ENSMUSG00000016346.18_6	chr2	-	1429	8	FSM	ENSMUSG00000016346.18	ENSMUST00000154164.8	1226	8	-89	-114	-5	114	multi-exon	FALSE	canonical	2	2	junction_1	4.20398256273205	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATATACAAAAAGGAACA	NA	False	NA	NA	False	CATAAA	-23	NA	180777059	180750122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_180750355_180750814_180750911_180751467_180751579_180753792_180753919_180754855_180755032_180755364_180755492_180756431_180756523_180776589
ENSMUSG00000016356.19_2	chr2	+	3993	16	ISM	ENSMUSG00000016356.19	ENSMUST00000108856.9	4489	37	17713	170	3794	4	3prime_fragment	FALSE	canonical	1	1	junction_1	1.4360439485692	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAGGTGTCTGATCACT	NA	False	NA	NA	False	GATAAA	-22	NA	180646040	180659337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_180648641_180648918_180649029_180649359_180649519_180649588_180649667_180650312_180650400_180651169_180651224_180654859_180654956_180655028_180655083_180655182_180655237_180655662_180655717_180656580_180656653_180657219_180657256_180657335_180657403_180657482_180657651_180658047_180658126_180659111
ENSMUSG00000016382.16_0	chrX	-	3086	16	FSM	ENSMUSG00000016382.16	ENSMUST00000114059.10	3149	16	47	16	-36	-2	multi-exon	FALSE	canonical	3	263	junction_13	28.3953047762008	611	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATAATTATTCTCTACTC	NA	False	NA	NA	False	AATAAA	-10	NA	74918741	74829275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_74830506_74834567_74834693_74834890_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74918653
ENSMUSG00000016386.16_0	chr2	+	2660	7	FSM	ENSMUSG00000016386.16	ENSMUST00000111063.8	2848	7	185	3	185	-3	multi-exon	FALSE	canonical	3	15	junction_1	4.49691252107735	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCGGTGCTGCGTGGTTG	NA	False	NA	NA	False	AATAAA	-15	NA	106523798	106698698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_106524167_106529632_106529881_106575044_106575227_106613977_106614204_106691832_106691949_106694999_106695114_106697292
ENSMUSG00000016386.16_2	chr2	+	1270	6	NIC	ENSMUSG00000016386.16	novel	2848	7	NA	NA	239	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	9.53729521405309	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106523852	106697544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_106524167_106529632_106529881_106613977_106614204_106691832_106691949_106694999_106695114_106697292
ENSMUSG00000016409.5_0	chrX	+	4205	9	FSM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	14	11	14	-11	multi-exon	TRUE	canonical	3	360	junction_3	33.4381425171914	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATGTTTCATATTTTTA	NA	False	NA	13	True	AATAAA	-13	NA	36390461	36414388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443
ENSMUSG00000016409.5_18	chrX	+	2202	1	ISM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	21739	11	12118	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATGTTTCATATTTTTA	NA	False	NA	13	True	AATAAA	-13	NA	36412186	36414388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_36412200_36414400
ENSMUSG00000016427.8_0	chrX	-	382	3	FSM	ENSMUSG00000016427.8	ENSMUST00000016571.8	419	3	25	12	25	-12	multi-exon	FALSE	canonical	3	2951	junction_1	110	385	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATCTAAAGTCATTTT	2337	False	NA	-13	True	AATAAA	-8	NA	36454791	36451252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36451395_36453526_36453617_36454641
ENSMUSG00000016458.16_0	chr2	+	2945	9	FSM	ENSMUSG00000016458.16	ENSMUST00000133470.8	1220	9	-384	-1341	88	-6	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGAAAATGCAGGAGTC	NA	False	NA	NA	False	ATTAAA	-9	NA	104956961	105003951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_104957788_104963282_104963406_104963746_104963850_104973429_104973508_104993669_104993767_104997162_104997314_104999378_104999469_105000270_105000364_105002567
ENSMUSG00000016477.19_0	chr13	-	5077	7	FSM	ENSMUSG00000016477.19	ENSMUST00000102948.11	5097	7	11	9	11	-9	multi-exon	FALSE	canonical	3	88	junction_5	17.007351351695	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTCAGACTTGTGGAT	NA	False	NA	-12	True	AATAAA	-38	NA	30170035	30090566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102779_30104096_30104209_30169282
ENSMUSG00000016477.19_2	chr13	-	2107	1	ISM	ENSMUSG00000016477.19	ENSMUST00000221536.2	4597	7	75701	9	75551	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTCAGACTTGTGGAT	NA	False	NA	-12	True	AATAAA	-38	NA	30092673	30090566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_30090600_30092700
ENSMUSG00000016477.19_27	chr13	-	4607	7	FSM	ENSMUSG00000016477.19	ENSMUST00000222730.2	4579	7	-37	9	-37	-9	multi-exon	FALSE	canonical	3	13	junction_6	51.741075451607	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTCAGACTTGTGGAT	NA	False	NA	-12	True	AATAAA	-38	NA	30168411	30090566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102761_30104096_30104209_30168110
ENSMUSG00000016477.19_3	chr13	-	5060	7	NIC	ENSMUSG00000016477.19	novel	5097	7	NA	NA	10	-9	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	40.4790755274321	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTCAGACTTGTGGAT	NA	False	NA	-12	True	AATAAA	-38	NA	30170036	30090566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102761_30104096_30104209_30169282
ENSMUSG00000016477.19_7	chr13	-	4625	7	FSM	ENSMUSG00000016477.19	ENSMUST00000221536.2	4597	7	-37	9	-37	-9	multi-exon	FALSE	canonical	3	13	junction_6	42.1689722689826	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTCAGACTTGTGGAT	NA	False	NA	-12	True	AATAAA	-38	NA	30168411	30090566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102779_30104096_30104209_30168110
ENSMUSG00000016481.16_2	chr1	-	1276	9	NIC	ENSMUSG00000016481.16	novel	1501	9	NA	NA	10	-11	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	78.6018447620665	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTAAGACAGAAGTTGGTA	NA	False	NA	42	True	NA	NA	NA	194813859	194780977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
ENSMUSG00000016481.16_5	chr1	-	3644	9	NIC	ENSMUSG00000016481.16	novel	2776	10	NA	NA	18	801	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	81.0361609098062	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTTTCTTATAAATGTG	NA	False	NA	NA	False	NA	NA	NA	194813824	194778888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
ENSMUSG00000016481.16_7	chr1	-	1329	10	NIC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_9	50.3432661280975	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTAGGTGTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	194813867	194786103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
ENSMUSG00000016481.16_9	chr1	-	1601	10	FSM	ENSMUSG00000016481.16	ENSMUST00000075451.12	1651	10	44	6	17	0	multi-exon	FALSE	canonical	3	104	junction_9	54.0893179933677	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTAGGTGTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	194813825	194786103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
ENSMUSG00000016487.16_1	chr6	+	4826	27	FSM	ENSMUSG00000016487.16	ENSMUST00000016631.14	4851	27	22	3	0	-1	multi-exon	TRUE	canonical	1	79	junction_5	45.7139938177494	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGTGTATTTGTCATT	7561	False	NA	10	True	AATAAA	-14	NA	146790006	146933520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_146790182_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664_146899780_146902438_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146917719_146917892_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
ENSMUSG00000016487.16_2	chr6	+	4986	28	NIC	ENSMUSG00000016487.16	novel	4782	28	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	1	49	junction_2	70.7910234325529	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGTATTTGTCATTG	7563	False	NA	11	True	AATAAA	-15	NA	146790008	146933521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_146790182_146819245_146819407_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664_146899780_146902438_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146917719_146917892_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
ENSMUSG00000016487.16_4	chr6	+	4856	28	NIC	ENSMUSG00000016487.16	novel	4782	28	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	1	35	junction_15	73.2858432087318	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGTGTATTTGTCATT	7561	False	NA	10	True	AATAAA	-14	NA	146790006	146933520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_146790182_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664_146899780_146902438_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146914415_146914446_146917719_146917892_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
ENSMUSG00000016494.10_0	chr1	+	2334	8	FSM	ENSMUSG00000016494.10	ENSMUST00000016638.8	2454	8	112	8	-20	-8	multi-exon	FALSE	canonical	0	0	junction_4	1.35526185435788	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAATATTTGATGTGGCC	1133	False	NA	NA	False	AATAAA	-35	NA	194621238	194643579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_194621353_194630146_194630315_194631612_194631873_194633246_194633328_194640724_194640882_194641117_194641171_194641373_194641539_194642243
ENSMUSG00000016494.10_2	chr1	+	2499	8	FSM	ENSMUSG00000016494.10	ENSMUST00000110815.9	2554	8	30	25	0	-25	multi-exon	FALSE	canonical	0	0	junction_4	1.35526185435788	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAATTAAATTGATGATG	1107	False	NA	NA	False	AATAAA	-18	NA	194621212	194643562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_194621353_194630146_194630315_194631612_194631873_194633246_194633328_194640724_194640882_194641117_194641171_194641373_194641539_194642087
ENSMUSG00000016495.13_0	chr19	-	562	4	FSM	ENSMUSG00000016495.13	ENSMUST00000152936.8	604	4	17	25	17	3	multi-exon	FALSE	canonical	2	8	junction_1	25.1042271783503	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCATGGCAGTATTCTAA	NA	False	NA	-102	True	AATAAA	-18	NA	29339256	29326101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_29326406_29335716_29335804_29338216_29338328_29339196
ENSMUSG00000016495.13_1	chr19	-	678	5	NIC	ENSMUSG00000016495.13	novel	1012	7	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	17.2825779327044	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	False	NA	-105	True	AATAAA	-15	NA	29339265	29326104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_29326406_29327759_29327870_29335716_29335804_29338216_29338328_29339196
ENSMUSG00000016495.13_2	chr19	-	813	6	FSM	ENSMUSG00000016495.13	ENSMUST00000143467.8	1020	6	104	103	7	3	multi-exon	FALSE	canonical	3	35	junction_3	10.1390334845093	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCATGGCAGTATTCTAA	NA	False	NA	-102	True	AATAAA	-18	NA	29339266	29326101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338328_29339196
ENSMUSG00000016495.13_3	chr19	-	1682	5	ISM	ENSMUSG00000016495.13	ENSMUST00000016639.12	1012	7	104	-3	7	3	intron_retention	FALSE	canonical	3	35	junction_3	10.4163333279998	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCATGGCAGTATTCTAA	NA	False	NA	-102	True	AATAAA	-18	NA	29339266	29326101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216
ENSMUSG00000016503.19_0	chr5	+	1269	9	FSM	ENSMUSG00000016503.19	ENSMUST00000146511.8	1298	9	20	9	20	-1	multi-exon	FALSE	canonical	3	398	junction_8	56.9906790624572	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCGACTCTTTGCTGT	NA	False	NA	14	True	ATTAAA	-14	NA	146885486	146892415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933_146891994_146892177
ENSMUSG00000016503.19_2	chr5	+	1451	8	FSM	ENSMUSG00000016503.19	ENSMUST00000132102.2	1426	8	-28	3	20	0	multi-exon	FALSE	canonical	3	430	junction_2	50.1141553997328	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACATCCGACTCTTTGCT	NA	False	NA	12	True	ATTAAA	-12	NA	146885486	146892413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933
ENSMUSG00000016510.12_0	chr5	-	1568	4	FSM	ENSMUSG00000016510.12	ENSMUST00000066675.10	4927	4	1	3358	1	-411	multi-exon	FALSE	canonical	3	65	junction_3	27.6445694888204	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTGTGTAGTGAATCTG	NA	False	NA	-20	True	AATAAA	-15	NA	146900594	146891740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900521
ENSMUSG00000016510.12_1	chr5	-	1561	4	FSM	ENSMUSG00000016510.12	ENSMUST00000110566.2	1134	4	11	-438	-1	-409	multi-exon	FALSE	canonical	3	88	junction_3	16.996731711976	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGTAGTGAATCTGAC	NA	False	NA	-18	True	AATAAA	-17	NA	146900596	146891738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900532
ENSMUSG00000016510.12_2	chr5	-	1721	5	FSM	ENSMUSG00000016510.12	ENSMUST00000016654.9	2131	5	1	409	-1	-409	multi-exon	FALSE	canonical	3	7	junction_4	53.5863788662753	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGTAGTGAATCTGAC	NA	False	NA	-18	True	AATAAA	-17	NA	146900596	146891738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900030_146900191_146900532
ENSMUSG00000016510.12_4	chr5	-	1530	4	NIC	ENSMUSG00000016510.12	novel	1134	4	NA	NA	-1	-397	intron_retention	FALSE	canonical	1	3	junction_3	56.7156650905785	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGACCTTCACCTGACT	NA	False	NA	-6	True	AATAAA	-29	NA	146900596	146891726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_146892626_146893596_146893755_146895634_146896087_146900575
ENSMUSG00000016510.12_5	chr5	-	1738	5	FSM	ENSMUSG00000016510.12	ENSMUST00000110564.8	1257	5	-35	-446	1	-401	multi-exon	FALSE	canonical	3	9	junction_4	53.0023584380922	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATCTGACCTTCACCT	NA	False	NA	-10	True	AATAAA	-25	NA	146900594	146891730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900030_146900191_146900521
ENSMUSG00000016520.8_0	chr5	-	4065	10	FSM	ENSMUSG00000016520.8	ENSMUST00000016664.8	4557	10	26	466	26	-466	multi-exon	FALSE	canonical	3	45	junction_1	11.6724853214835	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAACTGAATATTTTGATT	4986	False	NA	-30	True	NA	NA	NA	147013370	146953930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_146955867_146956816_146956976_146961161_146961394_146964016_146964195_146964862_146965001_146965896_146966266_146969684_146969885_146970088_146970331_146978840_146979309_147013227
ENSMUSG00000016520.8_2	chr5	-	2287	3	ISM	ENSMUSG00000016520.8	ENSMUST00000016664.8	4557	10	52060	449	-5491	-449	3prime_fragment	FALSE	canonical	3	45	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTCTGTGCCTTCAGC	2437	False	NA	-13	True	NA	NA	NA	146961336	146953913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_146955867_146956816_146956976_146961161
ENSMUSG00000016520.8_3	chr5	-	4103	10	NNC	ENSMUSG00000016520.8	novel	4557	10	NA	NA	24	-449	intron_retention	FALSE	canonical	3	4	junction_9	19.312888295669	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTCTGTGCCTTCAGC	4984	False	NA	-13	True	NA	NA	NA	147013372	146953913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_146955867_146956816_146956976_146961161_146961394_146964016_146964195_146964862_146965001_146965896_146966266_146969684_146969885_146970088_146970331_146978840_146979309_147013208
ENSMUSG00000016520.8_8	chr5	-	2722	6	ISM	ENSMUSG00000016520.8	ENSMUST00000016664.8	4557	10	47260	627	-10291	-627	3prime_fragment	FALSE	canonical	3	45	junction_1	3.5213633723318	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGTCTGGTGAATATTT	NA	False	NA	-3	True	CATAAA	-14	NA	146966136	146954091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_146955867_146956816_146956976_146961161_146961394_146964016_146964195_146964862_146965001_146965896
ENSMUSG00000016526.9_0	chr1	-	922	1	ISM	ENSMUSG00000016526.9	ENSMUST00000016670.9	3164	3	8972	992	8877	-992	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCAGTGCATTGTTTTCA	9209	False	NA	-9	True	ATTAAA	-13	NA	131057105	131056183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_131056200_131057100
ENSMUSG00000016526.9_1	chr1	-	2107	3	FSM	ENSMUSG00000016526.9	ENSMUST00000016670.9	3164	3	66	991	-29	-991	multi-exon	FALSE	canonical	3	221	junction_1	9	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCAGTGCATTGTTTTCAT	303	False	NA	-8	True	ATTAAA	-14	NA	131066011	131056182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_131057983_131063996_131064109_131065816
ENSMUSG00000016528.11_0	chr1	-	2854	10	FSM	ENSMUSG00000016528.11	ENSMUST00000016672.11	2854	10	-5	5	-5	-5	multi-exon	FALSE	canonical	3	81	junction_6	17.0105268787113	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTTTTTCATTCTTTT	NA	False	NA	-19	True	ACTAAA	-14	NA	131025568	130981441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_130982973_130983495_130983577_130983665_130983752_130984150_130984276_130984625_130984702_130985230_130985358_130985737_130985818_130986088_130986154_130986359_130986500_131025025
ENSMUSG00000016528.11_8	chr1	-	1044	1	ISM	ENSMUSG00000016528.11	ENSMUST00000016672.11	2854	10	43078	5	17778	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTTTTTCATTCTTTT	NA	False	NA	-19	True	ACTAAA	-14	NA	130982485	130981441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_130981400_130982500
ENSMUSG00000016534.16_11	chrX	-	3567	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	35	2	-5	-2	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	1712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAATTTGCTCACATTT	NA	False	NA	-24	True	AATAAA	-17	NA	37545296	37508385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
ENSMUSG00000016534.16_14	chrX	-	1746	1	ISM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	35200	2	21896	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAATTTGCTCACATTT	NA	False	NA	-24	True	AATAAA	-17	NA	37510131	37508385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_37508400_37510100
ENSMUSG00000016534.16_4	chrX	-	1732	9	FSM	ENSMUSG00000016534.16	ENSMUST00000016678.14	1769	9	35	2	-5	-2	multi-exon	FALSE	canonical	3	153	junction_1	278.250982702667	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCTGTTTCAATTTGT	NA	False	NA	-3	True	AATAAA	-16	NA	37545296	37493940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_37494449_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
ENSMUSG00000016541.11_0	chr15	+	1834	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	99	4	99	-4	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	1563	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGACTGGGACCCTTGAT	NA	False	NA	21	True	AATAAA	-29	NA	85220544	85347409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
ENSMUSG00000016552.14_0	chr15	-	4780	9	FSM	ENSMUSG00000016552.14	ENSMUST00000016696.13	4793	9	7	6	7	-2	multi-exon	TRUE	canonical	3	38	junction_8	9.62337648645214	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTTCTGCTCTGGCA	8666	False	NA	-4	True	AATAAA	-17	NA	77840915	77824727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_77827593_77829778_77829950_77831217_77831460_77832553_77832720_77836169_77836337_77836494_77836762_77837482_77837735_77839788_77840290_77840766
ENSMUSG00000016552.14_1	chr15	-	3798	6	ISM	ENSMUSG00000016552.14	ENSMUST00000016696.13	4793	9	4241	6	4194	-2	3prime_fragment	FALSE	canonical	3	41	junction_1	7.46726188103779	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTTCTGCTCTGGCA	5462	False	NA	-4	True	AATAAA	-17	NA	77836681	77824727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_77827593_77829778_77829950_77831217_77831460_77832553_77832720_77836169_77836337_77836494
ENSMUSG00000016552.14_2	chr15	-	2454	1	ISM	ENSMUSG00000016552.14	ENSMUST00000016696.13	4793	9	13741	6	2907	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTTCTGCTCTGGCA	9650	False	NA	-4	True	AATAAA	-17	NA	77827181	77824727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_77824700_77827200
ENSMUSG00000016552.14_5	chr15	-	4871	9	FSM	ENSMUSG00000016552.14	ENSMUST00000117725.2	4347	9	-33	-491	14	-2	multi-exon	FALSE	canonical	3	12	junction_8	16.6203000875435	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTTCTGCTCTGGCA	8673	False	NA	-4	True	AATAAA	-17	NA	77840908	77824727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_77827593_77829778_77829950_77831217_77831460_77832553_77832720_77836169_77836337_77836494_77836762_77837482_77837735_77839788_77840290_77840668
ENSMUSG00000016552.14_6	chr15	-	4995	8	ISM	ENSMUSG00000016552.14	ENSMUST00000016696.13	4793	9	268	7	221	-3	3prime_fragment	FALSE	canonical	3	41	junction_1	7.70369643583586	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAATTTCTGCTCTGGC	8927	False	NA	-5	True	AATAAA	-16	NA	77840654	77824728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_77827593_77829778_77829950_77831217_77831460_77832553_77832720_77836169_77836337_77836494_77836762_77837482_77837735_77839788
ENSMUSG00000016554.10_0	chr15	-	1866	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	29	4	13	-4	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	1949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTCGTCCTGTGCTCC	2774	False	NA	-15	True	AATAAA	-20	NA	77854984	77843201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
ENSMUSG00000016554.10_1	chr15	-	1847	15	NIC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	104	-4	combination_of_known_junctions	FALSE	canonical	3	103	junction_14	427.115718201396	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTCGTCCTGTGCTCC	3017	False	NA	-15	True	AATAAA	-20	NA	77854741	77843201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854658
ENSMUSG00000016559.15_0	chr11	-	1653	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	4	336	4	-336	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	6786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCAACTAAGTGTCAAACC	NA	False	NA	-21	True	AATAAA	-8	NA	115915326	115913122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
ENSMUSG00000016559.15_2	chr11	-	1993	3	FSM	ENSMUSG00000016559.15	ENSMUST00000139378.2	773	3	-27	-1193	4	-355	multi-exon	FALSE	canonical	3	13934	junction_1	171	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTACAAATAAACTTGTTTA	NA	False	NA	15	True	ACTAAA	-1	NA	115915326	115913141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115914362_115914450_115914605_115914707
ENSMUSG00000016619.11_0	chr15	+	4764	8	FSM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	-6	8	-6	-8	multi-exon	FALSE	canonical	3	399	junction_4	38.703477668983	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCAGCGTTGGGTACT	NA	False	NA	11	True	AATAAA	-11	NA	84807605	84827156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558_84822678_84823846
ENSMUSG00000016619.11_15	chr15	+	3997	4	ISM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	11627	8	11589	-8	3prime_fragment	FALSE	canonical	3	488	junction_1	6.0184900284226	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCAGCGTTGGGTACT	NA	False	NA	11	True	AATAAA	-11	NA	84819238	84827156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_84819725_84821687_84821770_84822558_84822678_84823846
ENSMUSG00000016619.11_19	chr15	+	2430	1	ISM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	17115	8	17077	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCAGCGTTGGGTACT	NA	False	NA	11	True	AATAAA	-11	NA	84824726	84827156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_84824700_84827200
ENSMUSG00000016624.16_1	chr15	-	3701	13	FSM	ENSMUSG00000016624.16	ENSMUST00000159939.8	3639	13	-62	0	-62	0	multi-exon	FALSE	canonical	0	0	junction_4	3.72677996249965	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTCGGTGGTCCTGTGT	NA	False	NA	-7	True	ATTAAA	-10	NA	84740312	84669584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_84671651_84675265_84675370_84675554_84675631_84675983_84676143_84678096_84678120_84679280_84679336_84681523_84681601_84682843_84682896_84687654_84687787_84688960_84689312_84692266_84692360_84738939_84739006_84739865
ENSMUSG00000016624.16_2	chr15	-	3696	12	FSM	ENSMUSG00000016624.16	ENSMUST00000162044.8	2568	12	-378	-750	-80	0	multi-exon	FALSE	canonical	1	4	junction_7	2.56163687338279	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTCGGTGGTCCTGTGT	NA	False	NA	-7	True	ATTAAA	-10	NA	84740330	84669584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_84671651_84675265_84675370_84675554_84675631_84675983_84676143_84679280_84679336_84681523_84681601_84682843_84682896_84687654_84687787_84688960_84689312_84692266_84692360_84738939_84739006_84739865
ENSMUSG00000016626.11_0	chr7	+	3311	11	FSM	ENSMUSG00000016626.11	ENSMUST00000084763.5	3272	11	-38	-1	-38	1	multi-exon	FALSE	canonical	2	8	junction_7	2.19089023002066	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCACAAGTGTCATG	NA	False	NA	NA	False	AGTAAA	-12	NA	106766158	106797301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_106766289_106780365_106780453_106780877_106782460_106783934_106784109_106785754_106785920_106789229_106789401_106790265_106790437_106791652_106791824_106795248_106795420_106796353_106796525_106796983
ENSMUSG00000016626.11_4	chr7	+	3765	10	ISM	ENSMUSG00000016626.11	ENSMUST00000084763.5	3272	11	-27	-7	-27	-2	intron_retention	FALSE	canonical	2	8	junction_7	2.19988776369148	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAAGTGTCATGTTTTTT	NA	False	NA	NA	False	AGTAAA	-18	NA	106766169	106797307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_106766289_106780365_106780453_106780877_106782460_106783934_106784109_106785754_106785920_106789229_106789401_106790265_106790437_106791652_106791824_106795248_106795420_106796353
ENSMUSG00000016637.8_0	chr15	-	970	7	FSM	ENSMUSG00000016637.8	ENSMUST00000016781.8	1013	7	39	4	39	-4	multi-exon	FALSE	canonical	0	0	junction_3	104.002270274366	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACAACGGCTTCTGTTCT	NA	False	NA	-6	True	AATAAA	-10	NA	78058268	78043666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051330_78052112_78052193_78057968
ENSMUSG00000016637.8_1	chr15	-	1286	7	NIC	ENSMUSG00000016637.8	novel	1013	7	NA	NA	39	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	128.12418021418	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAGCAACAACGGCTTC	NA	False	NA	-12	True	AATAAA	-4	NA	78058268	78043672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051652_78052112_78052193_78057968
ENSMUSG00000016637.8_3	chr15	-	613	6	ISM	ENSMUSG00000016637.8	ENSMUST00000230844.2	760	7	5534	8	344	-8	3prime_fragment	FALSE	canonical	0	0	junction_3	113.205300229274	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCAACAACGGCTTCTG	NA	False	NA	-10	True	AATAAA	-6	NA	78052139	78043670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051330_78052112
ENSMUSG00000016637.8_5	chr15	-	2417	1	NIC	ENSMUSG00000016637.8	novel	760	7	NA	NA	5049	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCAACAACGGCTTCTG	NA	False	NA	-10	True	AATAAA	-6	NA	78046087	78043670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_78043700_78046100
ENSMUSG00000016664.17_12	chr15	-	3250	12	NIC	ENSMUSG00000016664.17	novel	3083	12	NA	NA	13	-14	intron_retention	FALSE	canonical	3	37	junction_10	226.521303250812	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGACAGTCCCTTTG	7120	False	NA	-14	True	AATAAA	-13	NA	83348794	83260336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83337067_83337167_83348659
ENSMUSG00000016664.17_14	chr15	-	3199	11	FSM	ENSMUSG00000016664.17	ENSMUST00000165095.9	3186	11	-31	18	-22	-14	multi-exon	FALSE	canonical	3	62	junction_10	172.10531659423	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGACAGTCCCTTTG	NA	False	NA	-14	True	AATAAA	-13	NA	83317047	83260336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316864
ENSMUSG00000016664.17_2	chr15	-	3161	11	FSM	ENSMUSG00000016664.17	ENSMUST00000171436.8	3693	11	3	529	3	-14	multi-exon	FALSE	canonical	3	507	junction_5	57.2486681067778	1097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGACAGTCCCTTTG	7110	False	NA	-14	True	AATAAA	-13	NA	83348804	83260336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83348659
ENSMUSG00000016664.17_9	chr15	-	3114	11	FSM	ENSMUSG00000016664.17	ENSMUST00000231184.2	3103	11	-25	14	-25	-14	multi-exon	FALSE	canonical	3	32	junction_10	180.758512939225	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGACAGTCCCTTTG	NA	False	NA	-14	True	AATAAA	-13	NA	83317050	83260336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316952
ENSMUSG00000016757.12_0	chr15	-	3187	14	FSM	ENSMUSG00000016757.12	ENSMUST00000016901.5	3774	14	33	554	33	-525	multi-exon	FALSE	canonical	3	239	junction_9	15.0977093760069	560	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGTCTTTTCTCTTTG	4704	False	NA	-3	True	AGTAAA	-15	NA	83479325	83459844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83461250_83461947_83462087_83462835_83462905_83464268_83464351_83464695_83464848_83465868_83465981_83466245_83466441_83466546_83466664_83468856_83468934_83471051_83471186_83471274_83471435_83472703_83472903_83475579_83475750_83479149
ENSMUSG00000016758.5_1	chr15	+	939	5	FSM	ENSMUSG00000016758.5	ENSMUST00000016902.5	942	5	0	3	0	-1	multi-exon	FALSE	canonical	3	12	junction_1	7.58287544405155	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCCCCTTAGGTCGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	83411062	83428832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_83411138_83425495_83425644_83427265_83427365_83427780_83427899_83428333
ENSMUSG00000016831.13_0	chr14	+	3435	10	FSM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	20	1895	20	-1895	multi-exon	FALSE	canonical	3	15	junction_1	167.945390889383	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACATCTTTTAAATGT	NA	False	NA	2	True	AGTAAA	-14	NA	52516622	52531963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_52516690_52516844_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
ENSMUSG00000016831.13_19	chr14	+	3102	8	ISM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	673	1894	87	-1894	3prime_fragment	FALSE	canonical	3	458	junction_3	38.4659934625537	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACATCTTTTAAATGTG	NA	False	NA	3	True	AGTAAA	-15	NA	52517275	52531964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
ENSMUSG00000016831.13_3	chr14	+	3165	9	ISM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	445	1895	-26	-1895	3prime_fragment	FALSE	canonical	3	458	junction_4	39.6389959509572	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACATCTTTTAAATGT	NA	False	NA	2	True	AGTAAA	-14	NA	52517047	52531963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
ENSMUSG00000016833.15_0	chr5	+	504	6	FSM	ENSMUSG00000016833.15	ENSMUST00000016977.15	638	6	123	11	3	-1	multi-exon	FALSE	canonical	3	1615	junction_5	130.796636042369	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCAACTAATTTGAGTGG	NA	False	NA	40	True	AATAAA	-22	NA	100946615	100952326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835_100951896_100952197
ENSMUSG00000016833.15_1	chr5	+	436	5	FSM	ENSMUSG00000016833.15	ENSMUST00000112898.8	460	5	18	6	8	-6	multi-exon	FALSE	canonical	3	63	junction_3	755.69086768334	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGACTCCAACTAATTTG	NA	False	NA	35	True	AATAAA	-17	NA	100946620	100952321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100951835_100951896_100952197
ENSMUSG00000016918.16_0	chr1	+	4574	22	FSM	ENSMUSG00000016918.16	ENSMUST00000177608.8	5598	22	209	815	-46	0	multi-exon	FALSE	canonical	2	8	junction_1	9.77989051592099	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTGTGCTTGCTAGAT	NA	False	NA	18	True	AATAAA	-42	NA	12762709	12930601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_12762909_12798817_12798913_12856302_12856376_12856691_12856923_12866989_12867230_12875403_12875556_12878077_12878248_12887561_12887713_12888601_12888778_12890624_12890754_12891018_12891076_12892193_12892324_12906336_12906554_12908582_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12920983_12921018_12929035
ENSMUSG00000016918.16_1	chr1	+	4531	21	NIC	ENSMUSG00000016918.16	novel	5598	22	NA	NA	-50	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_20	12.7499019604074	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGACCGGCTCTCTCT	NA	False	NA	5	True	AATAAA	-29	NA	12762705	12930588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_12762909_12798817_12798913_12856302_12856376_12856691_12856923_12866989_12867230_12875403_12875556_12878077_12878248_12887561_12887713_12888601_12888778_12890624_12890754_12891018_12891076_12892193_12892324_12906336_12906554_12908582_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12929035
ENSMUSG00000016918.16_14	chr1	+	3177	14	ISM	ENSMUSG00000016918.16	ENSMUST00000088585.10	4630	22	99929	6	-17570	0	3prime_fragment	FALSE	canonical	3	34	junction_8	7.00380285544002	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGGCTCTCTCTGTGCTTG	NA	False	NA	12	True	AATAAA	-36	NA	12888681	12930595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_12888778_12890624_12890754_12891018_12891076_12892193_12892324_12906336_12906554_12908582_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12920983_12921018_12929035
ENSMUSG00000016918.16_17	chr1	+	3559	10	ISM	ENSMUSG00000016918.16	ENSMUST00000088585.10	4630	22	117603	-807	104	-8	3prime_fragment	FALSE	canonical	3	34	junction_4	8.14376986747053	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGTTACTCGTTTCAG	NA	False	NA	NA	False	AATAAA	-9	NA	12906355	12931408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_12906554_12908582_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12920983_12921018_12929035
ENSMUSG00000016918.16_18	chr1	+	2988	9	ISM	ENSMUSG00000016918.16	ENSMUST00000088585.10	4630	22	119914	-518	2415	-297	3prime_fragment	FALSE	canonical	3	34	junction_3	8.11537891906472	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAACTTAATGTGGTGT	NA	False	NA	NA	False	AGTAAA	-9	NA	12908666	12931119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12920983_12921018_12929035
ENSMUSG00000016918.16_2	chr1	+	5279	21	FSM	ENSMUSG00000016918.16	ENSMUST00000180062.8	4636	21	175	-818	-34	-3	multi-exon	FALSE	canonical	0	0	junction_1	11.3950647211852	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTACTCGTTTCAGAGAAA	NA	False	NA	NA	False	AATAAA	-14	NA	12762721	12931413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_12762909_12856302_12856376_12856691_12856923_12866989_12867230_12875403_12875556_12878077_12878248_12887561_12887713_12888601_12888778_12890624_12890754_12891018_12891076_12892193_12892324_12906336_12906554_12908582_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12920983_12921018_12929035
ENSMUSG00000016918.16_24	chr1	+	1870	1	ISM	ENSMUSG00000016918.16	ENSMUST00000177608.8	5598	22	166749	297	16235	-297	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAACTTAATGTGGTGT	NA	False	NA	NA	False	AGTAAA	-9	NA	12929249	12931119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_12929200_12931100
ENSMUSG00000016918.16_8	chr1	+	5027	22	FSM	ENSMUSG00000016918.16	ENSMUST00000088585.10	4630	22	120	-517	120	-298	multi-exon	FALSE	canonical	3	16	junction_1	8.51675685882192	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAAACTTAATGTGGTG	NA	False	NA	NA	False	AGTAAA	-8	NA	12788872	12931118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_12789008_12798817_12798913_12856302_12856376_12856691_12856923_12866989_12867230_12875403_12875556_12878077_12878248_12887561_12887713_12888601_12888778_12890624_12890754_12891018_12891076_12892193_12892324_12906336_12906554_12908582_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12920983_12921018_12929035
ENSMUSG00000016921.15_0	chr2	+	1752	6	FSM	ENSMUSG00000016921.15	ENSMUST00000130411.7	3527	6	0	1775	0	138	multi-exon	FALSE	canonical	3	865	junction_2	49.2097551304617	1095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTATTTTGTGCTGTTA	NA	False	NA	3	True	AATAAA	-16	NA	162773447	162777266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_162773698_162773913_162774063_162775345_162775471_162775573_162775783_162776147_162776232_162776331
ENSMUSG00000016921.15_14	chr2	+	1525	4	ISM	ENSMUSG00000016921.15	ENSMUST00000193611.6	2897	5	1729	-141	1596	141	3prime_fragment	FALSE	canonical	3	867	junction_3	54.1376845541891	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTGTGCTGTTAATC	NA	False	NA	6	True	AATAAA	-19	NA	162775176	162777269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_162775471_162775573_162775783_162776147_162776232_162776331
ENSMUSG00000016921.15_19	chr2	+	2155	1	ISM	ENSMUSG00000016921.15	ENSMUST00000130411.7	3527	6	3431	8	3298	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGAAAGACTTGTTCTTC	NA	False	NA	9	True	AATAAA	-10	NA	162776878	162779033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_162776900_162779000
ENSMUSG00000016921.15_5	chr2	+	2019	7	FSM	ENSMUSG00000016921.15	ENSMUST00000017065.15	1666	7	-34	-319	0	137	multi-exon	FALSE	canonical	3	50	junction_2	407.538443994347	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCTTATTTTGTGCTGTT	NA	False	NA	2	True	AATAAA	-15	NA	162773447	162777265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_162773698_162773913_162774063_162774734_162775003_162775345_162775471_162775573_162775783_162776147_162776232_162776331
ENSMUSG00000016933.18_0	chr2	+	5187	33	NIC	ENSMUSG00000016933.18	novel	4388	33	NA	NA	-18	2	combination_of_known_junctions	FALSE	canonical	3	165	junction_14	23.8978947817585	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTAACTTGTTTGTTTC	NA	False	NA	18	True	AATAAA	-19	NA	160573201	160605208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_160573265_160573637_160573954_160589694_160589848_160589953_160590048_160590201_160590250_160592882_160592968_160593062_160593147_160593355_160593391_160593552_160593626_160593703_160593806_160594007_160594127_160594214_160594301_160594373_160594495_160595104_160595274_160595361_160595485_160595562_160595665_160595743_160595932_160596204_160596406_160596482_160596603_160596680_160596862_160597660_160597739_160598460_160598565_160598789_160598887_160599133_160599204_160599891_160600050_160601373_160601471_160601601_160601827_160601902_160602052_160602999_160603115_160603224_160603387_160603479_160603569_160603658_160603844_160604013
ENSMUSG00000016933.18_33	chr2	+	5132	32	FSM	ENSMUSG00000016933.18	ENSMUST00000109462.8	5107	32	-23	-2	11	2	multi-exon	FALSE	canonical	3	165	junction_13	22.7747418375012	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTAACTTGTTTGTTTC	NA	False	NA	18	True	AATAAA	-19	NA	160573629	160605208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_160573954_160589694_160589848_160589953_160590048_160590201_160590250_160592882_160592968_160593062_160593147_160593355_160593391_160593552_160593626_160593703_160593806_160594007_160594127_160594214_160594301_160594373_160594495_160595104_160595274_160595361_160595485_160595562_160595665_160595743_160595932_160596204_160596406_160596482_160596603_160596680_160596862_160597660_160597739_160598460_160598565_160598789_160598887_160599133_160599204_160599891_160600050_160601373_160601471_160601601_160601827_160601902_160602052_160602999_160603115_160603224_160603387_160603479_160603569_160603658_160603844_160604013
ENSMUSG00000016940.19_14	chr11	+	965	1	Genic_Genomic	ENSMUSG00000016940.19	novel	NA	NA	NA	NA	958	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTCTCTCCTTCATT	NA	False	NA	29	True	NA	NA	NA	115321136	115322101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_115321100_115322100
ENSMUSG00000016940.19_2	chr11	+	1742	6	FSM	ENSMUSG00000016940.19	ENSMUST00000103035.10	1764	6	21	1	-1	-1	multi-exon	FALSE	canonical	3	121	junction_1	5.67097875150313	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTGTGTCTCTCCTTCA	3757	False	NA	27	True	NA	NA	NA	115310974	115322099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115311333_115312808_115312918_115315309_115315402_115318258_115318355_115320105_115320232_115321138
ENSMUSG00000016940.19_3	chr11	+	4415	4	ISM	ENSMUSG00000016940.19	ENSMUST00000103035.10	1764	6	1	6	1	-6	intron_retention	FALSE	canonical	3	121	junction_1	3.09120616516523	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGATACCTGTGTCTCTC	3737	False	NA	22	True	NA	NA	NA	115310954	115322094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115311333_115312808_115312918_115315309_115315402_115318258
ENSMUSG00000016940.19_5	chr11	+	2653	5	FSM	ENSMUSG00000016940.19	ENSMUST00000106533.8	2649	5	-7	3	-7	-3	multi-exon	FALSE	canonical	3	121	junction_1	5.97390157267426	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATACCTGTGTCTCTCCTT	3751	False	NA	25	True	NA	NA	NA	115310968	115322097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115311333_115312808_115312918_115315309_115315402_115318258_115318355_115320105
ENSMUSG00000016946.7_0	chr17	-	2401	6	FSM	ENSMUSG00000016946.7	ENSMUST00000017090.6	2443	6	34	8	34	-8	multi-exon	FALSE	canonical	3	983	junction_3	66.4090355298133	1525	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTGTGTTCAGCAACTG	NA	False	NA	-30	True	AATAAA	-12	NA	24292425	24266715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24268419_24274898_24275025_24276714_24276811_24278195_24278288_24279216_24279326_24292150
ENSMUSG00000016984.8_3	chr11	-	4089	7	NNC	ENSMUSG00000016984.8	novel	4185	6	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	65.7150836735541	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAAGAGAGTGAAGAGAC	NA	False	NA	NA	False	AATAAA	-15	NA	17903873	17888758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_17889093_17889183_17890351_17895606_17897568_17897774_17897888_17902251_17902329_17902577_17902704_17903562
ENSMUSG00000016984.8_4	chr11	-	3041	6	FSM	ENSMUSG00000016984.8	ENSMUST00000076661.7	4185	6	2	1142	2	-1142	multi-exon	FALSE	canonical	3	153	junction_2	14.7322774885623	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAACAACTTGGTTTTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	17903873	17889897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_17890351_17895606_17897568_17897774_17897888_17902251_17902329_17902577_17902704_17903562
ENSMUSG00000016984.8_6	chr11	-	1581	2	ISM	ENSMUSG00000016984.8	ENSMUST00000076661.7	4185	6	7141	1142	7141	-1142	3prime_fragment	FALSE	canonical	3	181	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAACAACTTGGTTTTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	17896734	17889897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_17890351_17895606
ENSMUSG00000016995.18_0	chr2	-	2473	11	FSM	ENSMUSG00000016995.18	ENSMUST00000103103.10	2304	11	-203	34	-203	-34	multi-exon	FALSE	canonical	0	0	junction_1	0.458257569495584	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATT	9971	False	NA	NA	False	NA	NA	NA	164246737	164231346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_164231635_164231712_164231821_164234761_164234915_164235015_164235430_164238644_164238768_164238861_164238985_164239083_164239207_164241651_164241775_164242447_164243018_164243761_164243883_164246410
ENSMUSG00000017009.4_0	chr2	-	2449	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	9	0	-9	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTCAGCCTGTCAGTT	NA	False	NA	38	True	AATAAA	-15	NA	164285106	164266175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
ENSMUSG00000017009.4_2	chr2	-	727	1	ISM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	18204	9	18204	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTCAGCCTGTCAGTT	9218	False	NA	38	True	AATAAA	-15	NA	164266902	164266175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_164266200_164266900
ENSMUSG00000017057.10_0	chrX	+	3680	11	FSM	ENSMUSG00000017057.10	ENSMUST00000033418.8	3712	11	28	4	28	-4	multi-exon	FALSE	canonical	3	38	junction_2	4.27083130081252	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAAATGCTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	35375790	35434908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_35375929_35390297_35390438_35394256_35394396_35396616_35396738_35404865_35405051_35407663_35407816_35412302_35412351_35412631_35412765_35415670_35415768_35419195_35419281_35432466
ENSMUSG00000017057.10_6	chrX	+	1704	1	ISM	ENSMUSG00000017057.10	ENSMUST00000033418.8	3712	11	57442	4	57442	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAAATGCTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	35433204	35434908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_35433200_35434900
ENSMUSG00000017119.21_0	chr11	+	4733	24	FSM	ENSMUSG00000017119.21	ENSMUST00000103099.8	4789	24	47	9	-38	-9	multi-exon	TRUE	canonical	3	23	junction_1	55.4078195296328	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGCCAACCAAGCTGTTT	316	False	NA	12	True	AATAAA	-15	NA	101443021	101472768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101443412_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
ENSMUSG00000017119.21_1	chr11	+	4620	23	NIC	ENSMUSG00000017119.21	novel	4789	24	NA	NA	-34	-7	intron_retention	FALSE	canonical	3	23	junction_1	55.8982251082084	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAACCAAGCTGTTTAT	320	False	NA	14	True	AATAAA	-17	NA	101443025	101472770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101443412_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
ENSMUSG00000017119.21_10	chr11	+	4326	23	FSM	ENSMUSG00000017119.21	ENSMUST00000107208.8	4344	23	11	7	2	-7	multi-exon	FALSE	canonical	3	41	junction_22	52.5711049377904	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAACCAAGCTGTTTAT	989	False	NA	14	True	AATAAA	-17	NA	101443694	101472770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101471410
ENSMUSG00000017119.21_11	chr11	+	4432	24	FSM	ENSMUSG00000017119.21	ENSMUST00000103098.9	4654	24	215	7	2	-7	multi-exon	FALSE	canonical	3	112	junction_17	38.3552196362625	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAACCAAGCTGTTTAT	989	False	NA	14	True	AATAAA	-17	NA	101443694	101472770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
ENSMUSG00000017119.21_15	chr11	+	4216	22	NIC	ENSMUSG00000017119.21	novel	4339	23	NA	NA	0	-8	intron_retention	FALSE	canonical	3	41	junction_21	53.0816766793681	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCCAACCAAGCTGTTTA	987	False	NA	13	True	AATAAA	-16	NA	101443692	101472769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101471410
ENSMUSG00000017119.21_8	chr11	+	4321	23	FSM	ENSMUSG00000017119.21	ENSMUST00000107213.8	4339	23	11	7	2	-7	multi-exon	FALSE	canonical	3	94	junction_16	37.5030852725303	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAACCAAGCTGTTTAT	989	False	NA	14	True	AATAAA	-17	NA	101443694	101472770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
ENSMUSG00000017119.21_9	chr11	+	4324	25	NIC	ENSMUSG00000017119.21	novel	4654	24	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	3	13	junction_20	55.70358057512	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAACCAAGCTGTTTAT	989	False	NA	14	True	AATAAA	-17	NA	101443694	101472770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101465942_101466049_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
ENSMUSG00000017132.18_0	chr11	-	3143	13	FSM	ENSMUSG00000017132.18	ENSMUST00000017276.14	3135	13	-9	1	-9	-1	multi-exon	FALSE	canonical	3	24	junction_4	8.05665701282003	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCACTTCATGTTCTGCT	8623	False	NA	-7	True	AATAAA	-15	NA	118139395	118055001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_118056921_118059841_118059997_118061651_118061724_118068045_118068123_118073045_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206_118076326_118076585_118076653_118083222_118083288_118084440_118084524_118139264
ENSMUSG00000017132.18_1	chr11	-	1685	1	ISM	ENSMUSG00000017132.18	ENSMUST00000106302.9	3119	13	46887	5	46887	4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCATGTTCTGCTCTGCT	NA	False	NA	-2	True	AATAAA	-20	NA	118056681	118054996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_118055000_118056700
ENSMUSG00000017132.18_6	chr11	-	1733	10	NNC	ENSMUSG00000017132.18	novel	545	6	NA	NA	11	3862	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	11.5256022043466	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTTAAAAGTGTCCGAG	8611	False	NA	NA	False	AATAAA	-15	NA	118139407	118071935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_118072737_118073045_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206_118076326_118076585_118076653_118083222_118083288_118084440_118084524_118139264
ENSMUSG00000017132.18_9	chr11	-	2748	9	ISM	ENSMUSG00000017132.18	ENSMUST00000017276.14	3135	13	63110	1	27292	-1	3prime_fragment	FALSE	canonical	3	24	junction_4	8.08451451851006	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCACTTCATGTTCTGCT	NA	False	NA	-7	True	AATAAA	-15	NA	118076276	118055001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_118056921_118059841_118059997_118061651_118061724_118068045_118068123_118073045_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206
ENSMUSG00000017144.9_0	chr2	-	2821	5	FSM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	6	1	5	-1	multi-exon	FALSE	canonical	3	429	junction_2	50.2792203599061	1116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGGGATGTTTTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	51039117	51020450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_51022558_51024094_51024230_51027147_51027258_51038235_51038324_51038736
ENSMUSG00000017144.9_5	chr2	-	1571	1	ISM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	17102	1	17085	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGGGATGTTTTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	51022021	51020450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_51020400_51022000
ENSMUSG00000017146.13_0	chr11	-	6549	23	FSM	ENSMUSG00000017146.13	ENSMUST00000017290.11	6572	23	18	5	18	-5	multi-exon	FALSE	canonical	3	266	junction_5	36.2819537137853	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATTTTGACAAAGAATG	NA	False	NA	-16	True	AATAAA	-10	NA	101442687	101379594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101414150_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
ENSMUSG00000017146.13_2	chr11	-	4025	14	ISM	ENSMUSG00000017146.13	ENSMUST00000017290.11	6572	23	26985	5	-36	-5	3prime_fragment	FALSE	canonical	3	266	junction_5	41.5443015837653	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATTTTGACAAAGAATG	9908	False	NA	-16	True	AATAAA	-10	NA	101415720	101379594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101414150
ENSMUSG00000017176.18_1	chr11	-	1371	9	FSM	ENSMUSG00000017176.18	ENSMUST00000092688.12	1399	9	27	1	11	-1	multi-exon	FALSE	canonical	3	274	junction_8	92.107868149252	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCACGCGTCTTTAATCC	NA	False	NA	-3	True	ATTAAA	-18	NA	100331888	100320179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
ENSMUSG00000017176.18_2	chr11	-	1340	8	FSM	ENSMUSG00000017176.18	ENSMUST00000092689.9	1344	8	6	-2	2	-1	multi-exon	FALSE	canonical	3	21	junction_7	183.081112836772	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCACGCGTCTTTAATCC	NA	False	NA	-3	True	ATTAAA	-18	NA	100331840	100320179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331753
ENSMUSG00000017176.18_3	chr11	-	1420	8	FSM	ENSMUSG00000017176.18	ENSMUST00000107397.2	1348	8	-69	-3	19	0	multi-exon	FALSE	canonical	3	485	junction_1	42.2470866040561	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGCACGCGTCTTTAAT	NA	False	NA	-5	True	ATTAAA	-16	NA	100331823	100320181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654
ENSMUSG00000017188.4_0	chr11	-	717	2	FSM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	167	2	-4	-2	multi-exon	FALSE	canonical	3	1870	junction_1	0	449	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAAGCTAGTGTGTGGG	5669	False	NA	-7	True	AATAAA	-18	NA	101169773	101168795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101169279_101169539
ENSMUSG00000017210.15_0	chr11	-	3383	26	FSM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	21	6	-4	-6	multi-exon	FALSE	canonical	3	102	junction_19	25.7353919729232	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTGCTTGTGTGGGG	NA	False	NA	-8	True	AATAAA	-17	NA	98620240	98595422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
ENSMUSG00000017210.15_11	chr11	-	3340	25	ISM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	448	6	-153	-6	3prime_fragment	TRUE	canonical	3	102	junction_19	24.5072268252992	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTGCTTGTGTGGGG	NA	False	NA	-8	True	AATAAA	-17	NA	98619813	98595422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610
ENSMUSG00000017210.15_15	chr11	-	3443	27	FSM	ENSMUSG00000017210.15	ENSMUST00000100500.9	3133	27	-7	-303	1	-6	multi-exon	FALSE	canonical	2	4	junction_20	46.7567196069438	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTGCTTGTGTGGGG	NA	False	NA	-8	True	AATAAA	-17	NA	98620243	98595422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608534_98608592_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
ENSMUSG00000017210.15_19	chr11	-	3078	22	ISM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	10802	6	177	-6	3prime_fragment	TRUE	canonical	3	102	junction_19	26.104708048797	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTGCTTGTGTGGGG	NA	False	NA	-8	True	AATAAA	-17	NA	98609459	98595422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322
ENSMUSG00000017210.15_7	chr11	-	3377	26	NIC	ENSMUSG00000017210.15	novel	3410	26	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	29	junction_25	34.6175446847404	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTGCTTGTGTGGGG	NA	False	NA	-8	True	AATAAA	-17	NA	98620243	98595422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620206
ENSMUSG00000017210.15_9	chr11	-	3065	23	ISM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	10568	6	-57	-6	3prime_fragment	FALSE	canonical	3	102	junction_19	25.5711614425442	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTGCTTGTGTGGGG	NA	False	NA	-8	True	AATAAA	-17	NA	98609693	98595422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643
ENSMUSG00000017221.15_3	chr11	+	2111	12	FSM	ENSMUSG00000017221.15	ENSMUST00000017365.15	2148	12	33	4	-4	-4	multi-exon	FALSE	canonical	3	1019	junction_3	95.9435956889203	1678	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTCCTTGTGCACGGTG	NA	False	NA	12	True	AATAAA	-10	NA	98573412	98586801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
ENSMUSG00000017264.17_0	chr4	+	2752	25	FSM	ENSMUSG00000017264.17	ENSMUST00000017408.14	2790	25	30	8	-3	0	multi-exon	FALSE	canonical	3	466	junction_4	49.4747234847138	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAAAGATGGTTCTTGG	NA	False	NA	NA	False	ATTAAA	-14	NA	148642915	148666850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
ENSMUSG00000017264.17_2	chr4	+	2677	24	FSM	ENSMUSG00000017264.17	ENSMUST00000076022.7	2682	24	-3	8	-3	0	multi-exon	FALSE	canonical	3	22	junction_18	124.035058157659	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAAAGATGGTTCTTGG	NA	False	NA	NA	False	ATTAAA	-14	NA	148642915	148666850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
ENSMUSG00000017264.17_6	chr4	+	2748	19	ISM	ENSMUSG00000017264.17	ENSMUST00000173154.8	2773	25	28	5584	-3	193	5prime_fragment	TRUE	canonical	3	466	junction_4	45.4584670025532	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTATAACATTTGTATATG	NA	False	NA	7	True	AATAAA	-17	NA	148642915	148661263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606
ENSMUSG00000017264.17_8	chr4	+	2993	18	ISM	ENSMUSG00000017264.17	ENSMUST00000076022.7	2682	24	-3	5595	-3	193	5prime_fragment	FALSE	canonical	3	466	junction_4	46.038196868842	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTATAACATTTGTATATG	NA	False	NA	7	True	AATAAA	-17	NA	148642915	148661263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265
ENSMUSG00000017286.16_3	chr11	-	1157	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	51	226	1	58	multi-exon	FALSE	canonical	3	653	junction_6	49.1602926659311	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTGAGACAACTATATGG	NA	False	NA	-14	True	ATTAAA	-23	NA	76134500	76112561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
ENSMUSG00000017288.16_0	chr11	-	2730	22	FSM	ENSMUSG00000017288.16	ENSMUST00000056601.11	2833	22	29	74	-1	-3	multi-exon	FALSE	canonical	3	37	junction_11	13.2142642642469	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACATGTCTTATTTTCTA	NA	False	NA	-6	True	ATTAAA	-12	NA	76070444	75937125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_75937409_75937890_75937996_75939265_75939404_75953810_75953881_75957566_75957716_75967260_75967340_75967865_75967949_75971972_75972121_75973267_75973511_75983046_75983142_75992812_75992915_76004766_76004909_76007884_76008028_76008487_76008632_76012343_76012423_76025234_76025355_76027024_76027141_76029133_76029221_76054623_76054691_76057024_76057075_76065452_76065534_76070238
ENSMUSG00000017288.16_12	chr11	-	633	2	FSM	ENSMUSG00000017288.16	ENSMUST00000129256.2	650	2	9	8	-5	-8	multi-exon	FALSE	canonical	3	20	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTATTTACTGTTTATG	NA	False	NA	-17	True	AATAAA	-8	NA	76070455	76067792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_76068209_76070238
ENSMUSG00000017291.14_0	chr11	-	5159	1	ISM	ENSMUSG00000017291.14	ENSMUST00000017435.11	11813	19	51177	9	51177	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACACAGTGTCTGCTCAC	NA	False	NA	-7	True	AATAAA	-10	NA	77425155	77419996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_77420000_77425200
ENSMUSG00000017291.14_1	chr11	-	7198	20	FSM	ENSMUSG00000017291.14	ENSMUST00000058496.8	12409	20	-20	5231	-20	-5231	multi-exon	FALSE	canonical	3	12	junction_19	12.6460443488519	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTACTGGCGTTTTAAA	8131	False	NA	NA	False	AATAAA	-14	NA	77498661	77425218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_77429155_77430879_77431063_77432450_77432664_77436114_77436355_77440097_77440302_77441697_77441827_77444498_77444736_77446389_77446525_77450567_77450772_77451079_77451248_77454489_77454572_77456571_77456666_77462432_77462525_77464521_77464636_77466398_77466496_77468148_77468195_77469551_77469654_77470599_77470672_77476098_77476321_77498033
ENSMUSG00000017291.14_4	chr11	-	6170	5	ISM	ENSMUSG00000017291.14	ENSMUST00000017435.11	11813	19	36094	3774	36094	-3774	3prime_fragment	FALSE	canonical	3	52	junction_2	9.09326673973661	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTGAAGCTGAGAACT	NA	False	NA	-14	True	ATTAAA	-9	NA	77440238	77423761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_77429155_77430879_77431063_77432450_77432664_77436114_77436355_77440097
ENSMUSG00000017291.14_7	chr11	-	7269	21	NNC	ENSMUSG00000017291.14	novel	12409	20	NA	NA	-26	-5229	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_19	10.1975487250613	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTACTGGCGTTTTAAAAC	8125	False	NA	NA	False	AATAAA	-16	NA	77498667	77425216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_77429155_77430879_77431063_77432450_77432664_77436114_77436355_77440097_77440302_77441697_77441827_77444498_77444736_77446389_77446525_77450567_77450772_77451079_77451248_77454489_77454572_77456571_77456666_77462432_77462525_77464521_77464636_77466398_77466496_77468148_77468195_77469551_77469654_77470599_77470672_77476098_77476321_77492524_77492588_77498033
ENSMUSG00000017299.14_0	chr2	+	1249	13	FSM	ENSMUSG00000017299.14	ENSMUST00000017443.14	1664	13	22	393	-9	-393	multi-exon	FALSE	canonical	3	563	junction_10	65.6144039064594	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAACACAGGTAGTGAGC	NA	False	NA	9	True	ATTAAA	-9	NA	164587924	164610134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164588079_164588626_164588698_164589382_164589480_164596029_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607080_164607153_164609626_164609683_164609782
ENSMUSG00000017299.14_1	chr2	+	897	8	ISM	ENSMUSG00000017299.14	ENSMUST00000109327.4	656	9	-17	2006	0	-5	5prime_fragment	FALSE	canonical	3	592	junction_6	60.090408076973	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAACTGTTGTGTTGTGT	NA	False	NA	8	True	NA	NA	NA	164587933	164601474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_164588079_164588626_164588698_164589382_164589480_164596029_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171
ENSMUSG00000017299.14_5	chr2	+	3723	12	NIC	ENSMUSG00000017299.14	novel	1664	13	NA	NA	-9	-393	intron_retention	FALSE	canonical	3	563	junction_10	67.5068407920191	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAACACAGGTAGTGAGC	NA	False	NA	9	True	ATTAAA	-9	NA	164587924	164610134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_164588079_164588626_164588698_164589382_164589480_164596029_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607080_164609683_164609782
ENSMUSG00000017307.17_0	chr2	-	3399	3	NIC	ENSMUSG00000017307.17	novel	1017	5	NA	NA	-7	-9	intron_retention	FALSE	canonical	3	55	junction_2	148	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTGGAGTAGCTGACCT	8219	False	NA	-10	True	AATAAA	-10	NA	164646749	164634696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_164637730_164641639_164641866_164646609
ENSMUSG00000017307.17_1	chr2	-	1095	6	FSM	ENSMUSG00000017307.17	ENSMUST00000103094.11	1152	6	53	4	-7	-4	multi-exon	TRUE	canonical	3	284	junction_4	26.9250812440743	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTAGCTGACCTTTAAT	8219	False	NA	-5	True	AATAAA	-15	NA	164646749	164634691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ENSMUSG00000017307.17_2	chr2	-	958	5	FSM	ENSMUSG00000017307.17	ENSMUST00000134611.4	1017	5	52	7	-7	-4	multi-exon	FALSE	canonical	3	55	junction_4	121.847240428333	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTAGCTGACCTTTAAT	8219	False	NA	-5	True	AATAAA	-15	NA	164646749	164634691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164646609
ENSMUSG00000017314.13_0	chr11	-	4072	12	FSM	ENSMUSG00000017314.13	ENSMUST00000100398.5	3577	12	7	-502	7	-7	multi-exon	FALSE	canonical	2	2	junction_2	3.33773813648833	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGTTTCTGGCTCTGTTT	681	False	NA	NA	False	ATTAAA	-10	NA	101973303	101947847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101950320_101951246_101951376_101951592_101951796_101952321_101952484_101952726_101952796_101952880_101952987_101953076_101953209_101954013_101954242_101955119_101955270_101955394_101955548_101971478_101971598_101973154
ENSMUSG00000017314.13_1	chr11	-	4084	13	FSM	ENSMUSG00000017314.13	ENSMUST00000017458.11	4089	13	1	4	1	-4	multi-exon	FALSE	canonical	1	2	junction_2	3.83242742918897	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTCTGGCTCTGTTTGTC	7668	False	NA	NA	False	ATTAAA	-13	NA	101979340	101947844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101950320_101951246_101951376_101951592_101951796_101952321_101952484_101952726_101952796_101952880_101952987_101953076_101953209_101954013_101954242_101955119_101955270_101955394_101955548_101971478_101971598_101976125_101976189_101979245
ENSMUSG00000017314.13_3	chr11	-	3264	7	ISM	ENSMUSG00000017314.13	ENSMUST00000100398.5	3577	12	20116	-507	20051	-2	3prime_fragment	FALSE	canonical	2	2	junction_2	4.14996653266291	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGCTCTGTTTGTCAT	NA	False	NA	NA	False	ATTAAA	-15	NA	101953194	101947842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_101950320_101951246_101951376_101951592_101951796_101952321_101952484_101952726_101952796_101952880_101952987_101953076
ENSMUSG00000017314.13_6	chr11	-	2746	3	ISM	ENSMUSG00000017314.13	ENSMUST00000100398.5	3577	12	21578	-507	21513	-2	3prime_fragment	TRUE	canonical	2	2	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGCTCTGTTTGTCAT	NA	False	NA	NA	False	ATTAAA	-15	NA	101951732	101947842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_101950320_101951246_101951376_101951592
ENSMUSG00000017376.16_0	chr11	-	4490	11	FSM	ENSMUSG00000017376.16	ENSMUST00000142739.8	4444	11	-55	9	-55	-9	multi-exon	FALSE	canonical	3	79	junction_6	8.57962703152066	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAACAATACGTCGCTGT	NA	False	NA	-10	True	ATTAAA	-10	NA	78588254	78458002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78459802_78462296_78462391_78463058_78463258_78465666_78465754_78474148_78474251_78477694_78477905_78480130_78480217_78481708_78481816_78509100_78509157_78517402_78517533_78586634
ENSMUSG00000017376.16_16	chr11	-	3373	12	NIC	ENSMUSG00000017376.16	novel	4444	11	NA	NA	-86	-7	combination_of_known_junctions	TRUE	canonical	2	3	junction_1	27.2178235234813	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAATACGTCGCTGTCT	NA	False	NA	-8	True	ATTAAA	-12	NA	78588285	78458000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78458569_78459718_78459802_78462296_78462391_78463058_78463258_78465666_78465754_78474148_78474251_78477694_78477905_78480130_78480217_78481708_78481816_78509100_78509157_78517402_78517533_78586634
ENSMUSG00000017386.11_0	chr11	-	2018	7	FSM	ENSMUSG00000017386.11	ENSMUST00000017530.4	2078	7	51	9	-22	-9	multi-exon	FALSE	canonical	3	457	junction_4	31.7525152109596	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACCTGATTCCAGCCTGT	NA	False	NA	-8	True	NA	NA	NA	78056364	78050234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78051375_78051618_78051775_78051858_78052021_78052112_78052275_78052343_78052449_78053207_78053260_78056123
ENSMUSG00000017386.11_8	chr11	-	2088	6	NIC	ENSMUSG00000017386.11	novel	2078	7	NA	NA	-22	-8	intron_retention	FALSE	canonical	3	463	junction_3	28.6258624324229	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTGATTCCAGCCTGTC	NA	False	NA	-7	True	NA	NA	NA	78056364	78050233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78051375_78051618_78051775_78051858_78052021_78052112_78052449_78053207_78053260_78056123
ENSMUSG00000017390.16_0	chr11	+	1617	9	FSM	ENSMUSG00000017390.16	ENSMUST00000017534.15	2786	9	138	1031	-62	-10	multi-exon	FALSE	canonical	3	130	junction_5	18.6547581061776	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCACACCGCTCT	NA	False	NA	8	True	AATAAA	-8	NA	78213931	78217576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78214049_78215215_78215340_78215429_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78216760_78216961_78217087
ENSMUSG00000017390.16_1	chr11	+	1434	8	NIC	ENSMUSG00000017390.16	novel	2786	9	NA	NA	-74	-5	combination_of_known_junctions	FALSE	canonical	1	2	junction_7	55.6079571460702	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCACACCGCTCTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	78213919	78217581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_78214049_78215215_78215340_78215429_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78217087
ENSMUSG00000017390.16_2	chr11	+	1746	8	ISM	ENSMUSG00000017390.16	ENSMUST00000017534.15	2786	9	131	1036	-69	-15	intron_retention	FALSE	canonical	3	130	junction_5	19.4411723842331	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGCAAAACACAGCACACC	NA	False	NA	3	True	AATAAA	-3	NA	78213924	78217571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78214049_78215215_78215340_78215429_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78216760
ENSMUSG00000017390.16_9	chr11	+	1353	7	ISM	ENSMUSG00000017390.16	ENSMUST00000102478.4	1700	8	436	1	310	-1	3prime_fragment	FALSE	canonical	3	130	junction_3	10.6301458127346	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACCGCTCTGTCTGTCTG	NA	False	NA	17	True	AATAAA	-17	NA	78215461	78217585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78216760_78216961_78217087
ENSMUSG00000017400.11_0	chr11	-	2946	11	FSM	ENSMUSG00000017400.11	ENSMUST00000017544.9	3050	11	102	2	102	-2	multi-exon	FALSE	canonical	3	31	junction_9	5.98748695196908	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTGCCTGCTTGGTGTA	5461	False	NA	-4	True	ATTAAA	-13	NA	97944186	97927450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97928897_97930444_97930583_97930923_97930976_97931247_97931346_97931964_97932027_97932129_97932203_97932292_97932406_97933354_97933446_97933582_97933681_97934305_97934613_97943718
ENSMUSG00000017400.11_1	chr11	-	929	1	ISM	ENSMUSG00000017400.11	ENSMUST00000017544.9	3050	11	15910	1	5990	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGCCTGCTTGGTGTAT	NA	False	NA	-3	True	ATTAAA	-14	NA	97928378	97927449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97927400_97928400
ENSMUSG00000017404.13_1	chr11	+	703	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	33	15	0	-15	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	2709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	0	True	AATAAA	-18	NA	97917782	97921303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUSG00000017404.13_15	chr11	+	671	5	ISM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	897	15	864	-15	3prime_fragment	FALSE	canonical	3	13947	junction_4	1138.33373291843	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	0	True	AATAAA	-18	NA	97918646	97921303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUSG00000017405.15_1	chr11	-	2780	15	FSM	ENSMUSG00000017405.15	ENSMUST00000017549.13	2809	15	29	0	-12	0	multi-exon	FALSE	canonical	1	11	junction_10	13.5103890486136	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6277	False	NA	0	True	AATAAA	-14	NA	78067472	78056931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78061779_78061915_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
ENSMUSG00000017405.15_25	chr11	-	768	1	NIC	ENSMUSG00000017405.15	novel	2882	14	NA	NA	511	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTTGGCTTATGATCT	NA	False	NA	-3	True	AATAAA	-11	NA	78057702	78056934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78056900_78057700
ENSMUSG00000017405.15_3	chr11	-	2625	15	NNC	ENSMUSG00000017405.15	novel	2809	15	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	14.9114734622815	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6282	False	NA	0	True	AATAAA	-14	NA	78067467	78056931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78061779_78062065_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
ENSMUSG00000017405.15_46	chr11	-	1485	6	ISM	ENSMUSG00000017405.15	ENSMUST00000152611.8	2882	14	7458	2	675	-2	3prime_fragment	FALSE	canonical	3	45	junction_3	5.91269819963779	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTGGCTTATGATCTC	NA	False	NA	-2	True	AATAAA	-12	NA	78059979	78056933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797
ENSMUSG00000017405.15_7	chr11	-	2914	14	FSM	ENSMUSG00000017405.15	ENSMUST00000152611.8	2882	14	-32	0	-9	0	multi-exon	FALSE	canonical	3	30	junction_7	9.26148734971841	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6280	False	NA	0	True	AATAAA	-14	NA	78067469	78056931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
ENSMUSG00000017417.15_0	chr11	-	2885	14	FSM	ENSMUSG00000017417.15	ENSMUST00000017561.15	2881	14	-5	1	-5	-1	multi-exon	FALSE	canonical	3	23	junction_9	6.65462423196374	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCGTCGCGCCTGCGTGT	6855	False	NA	-8	True	AATAAA	-16	NA	97877275	97814064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97815434_97816638_97816800_97819259_97819296_97823032_97823166_97824800_97824862_97829355_97829438_97831638_97831735_97844708_97844809_97845576_97845696_97846226_97846350_97846924_97846995_97847248_97847393_97869328_97869508_97877063
ENSMUSG00000017417.15_8	chr11	-	2850	14	FSM	ENSMUSG00000017417.15	ENSMUST00000107565.3	2439	14	4	-415	4	-3	multi-exon	FALSE	canonical	1	3	junction_12	10.3877488150122	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTCCGTCGCGCCTGCGT	6909	False	NA	-10	True	AATAAA	-14	NA	97877221	97814066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97815434_97816638_97816800_97819259_97819296_97823032_97823166_97824800_97824862_97829355_97829438_97831638_97831735_97844708_97844809_97845576_97845696_97846226_97846350_97846924_97846995_97847248_97847414_97869328_97869508_97877063
ENSMUSG00000017417.15_9	chr11	-	2078	8	ISM	ENSMUSG00000017417.15	ENSMUST00000017561.15	2881	14	32404	19	32359	-19	3prime_fragment	FALSE	canonical	3	28	junction_2	5.72498997414682	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAGGTATAGCCCTCAC	NA	False	NA	-26	True	AATGAA	-45	NA	97844866	97814082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97815434_97816638_97816800_97819259_97819296_97823032_97823166_97824800_97824862_97829355_97829438_97831638_97831735_97844708
ENSMUSG00000017418.15_0	chr2	+	6881	6	FSM	ENSMUSG00000017418.15	ENSMUST00000069870.11	6981	6	92	8	9	-4	multi-exon	FALSE	canonical	3	92	junction_3	13.7346277707115	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATGAAGTGTAGCCTGTG	4750	False	NA	8	True	AATAAA	-10	NA	15060142	15087259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_15060386_15072949_15073011_15074630_15074779_15077934_15078019_15079772_15079925_15081066
ENSMUSG00000017418.15_1	chr2	+	6883	6	FSM	ENSMUSG00000017418.15	ENSMUST00000128682.9	1035	6	8	-5856	8	-1	multi-exon	FALSE	canonical	3	15	junction_2	39.1989795785554	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGTGTAGCCTGTGTTT	4713	False	NA	11	True	AATAAA	-13	NA	15060105	15087262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_15060386_15072949_15073011_15074668_15074779_15077934_15078019_15079772_15079925_15081066
ENSMUSG00000017418.15_7	chr2	+	3447	1	ISM	ENSMUSG00000017418.15	ENSMUST00000017562.13	6933	6	29610	1	4006	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGTGTAGCCTGTGTTT	NA	False	NA	11	True	AATAAA	-13	NA	15083815	15087262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_15083800_15087300
ENSMUSG00000017421.19_0	chr11	+	2118	11	FSM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	16	111	-12	-108	multi-exon	FALSE	canonical	3	695	junction_8	108.208317610062	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTATGCCTTTTTAT	NA	False	NA	19	True	AATAAA	-8	NA	80274144	80286963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017421.19_1	chr11	+	2210	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-77	-571	-11	-108	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTATGCCTTTTTAT	NA	False	NA	19	True	AATAAA	-8	NA	80274145	80286963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017428.17_0	chr11	+	1542	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	14	1292	-5	47	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTACACTACCTAAAGCTG	NA	False	NA	3	True	NA	NA	NA	80319464	80362782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
ENSMUSG00000017428.17_1	chr11	+	1656	13	FSM	ENSMUSG00000017428.17	ENSMUST00000173938.8	1626	13	15	-45	-6	45	multi-exon	FALSE	canonical	3	918	junction_5	64.9491253897148	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCTTACACTACCTAAAGC	NA	False	NA	1	True	NA	NA	NA	80319463	80362780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277
ENSMUSG00000017453.5_1	chr11	-	1715	8	FSM	ENSMUSG00000017453.5	ENSMUST00000017597.5	1998	8	278	5	278	-5	multi-exon	FALSE	canonical	3	213	junction_3	30.9654184996286	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATATCTGCGGTGGTCTT	NA	False	NA	-7	True	AATAAA	-17	NA	77784644	77771445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_77772081_77772326_77772403_77772943_77773103_77773442_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
ENSMUSG00000017453.5_2	chr11	-	2041	7	NIC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	292	-5	intron_retention	FALSE	canonical	3	232	junction_1	25.5304828696121	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATATCTGCGGTGGTCTT	NA	False	NA	-7	True	AATAAA	-17	NA	77784630	77771445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_77772081_77772326_77772403_77772943_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
ENSMUSG00000017453.5_5	chr11	-	2574	6	NIC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	300	-5	intron_retention	FALSE	canonical	3	232	junction_1	26.8223787162884	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATATCTGCGGTGGTCTT	NA	False	NA	-7	True	AATAAA	-17	NA	77784622	77771445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_77772081_77772326_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
ENSMUSG00000017466.10_0	chr11	-	3524	5	FSM	ENSMUSG00000017466.10	ENSMUST00000017610.10	3709	5	182	3	182	-3	multi-exon	FALSE	canonical	3	24	junction_3	3.74165738677394	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGAGAAGGTTGATTC	2448	False	NA	-10	True	AATAAA	-8	NA	118246150	118191897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_118194723_118201401_118201527_118208244_118208354_118210934_118211036_118245786
ENSMUSG00000017478.16_1	chr8	+	3701	18	FSM	ENSMUSG00000017478.16	ENSMUST00000093073.12	3705	18	-1	5	-1	-4	multi-exon	FALSE	canonical	3	173	junction_3	41.8252254144417	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACTTTCTGGTCCTGGT	938	False	NA	10	True	AATAAA	-11	NA	123103380	123144094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
ENSMUSG00000017478.16_2	chr8	+	3771	19	FSM	ENSMUSG00000017478.16	ENSMUST00000017622.12	3810	19	33	6	-1	-6	multi-exon	FALSE	canonical	3	64	junction_3	72.8266375428831	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGCACTTTCTGGTCCTG	938	False	NA	8	True	AATAAA	-9	NA	123103380	123144092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123114431_123114504_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
ENSMUSG00000017478.16_30	chr8	+	3266	17	ISM	ENSMUSG00000017478.16	ENSMUST00000093073.12	3705	18	7031	7	6993	-6	3prime_fragment	FALSE	canonical	3	173	junction_2	42.9162975307749	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGCACTTTCTGGTCCTG	7970	False	NA	8	True	AATAAA	-9	NA	123110412	123144092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123110744_123113600_123113686_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
ENSMUSG00000017478.16_40	chr8	+	2213	11	ISM	ENSMUSG00000017478.16	ENSMUST00000093073.12	3705	18	26627	7	0	-6	3prime_fragment	FALSE	canonical	3	228	junction_5	31.8276609256791	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGCACTTTCTGGTCCTG	NA	False	NA	8	True	AATAAA	-9	NA	123130008	123144092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
ENSMUSG00000017485.12_0	chr14	-	5653	36	FSM	ENSMUSG00000017485.12	ENSMUST00000017629.12	10335	36	0	4682	0	1952	multi-exon	TRUE	canonical	3	144	junction_31	34.1687767724051	327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGTTCTTAGACTCTT	3843	False	NA	-8	True	ATTAAA	-6	NA	6104584	6038982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_6039465_6040330_6040426_6041163_6041290_6044297_6044409_6045984_6046065_6046939_6047142_6048898_6049061_6049277_6049423_6051231_6051427_6052727_6052812_6053050_6053207_6055769_6055862_6056006_6056203_6056643_6056845_6057572_6057708_6059737_6059970_6060445_6060595_6060814_6060937_6062357_6062473_6062558_6062652_6062923_6063034_6069266_6069373_6069635_6069747_6070728_6070855_6070998_6071157_6071841_6071981_6074033_6074172_6074254_6074357_6076430_6076605_6079783_6079997_6081275_6081374_6082344_6082491_6083608_6083673_6085215_6085307_6086545_6086702_6104036
ENSMUSG00000017491.10_2	chr14	+	3163	8	FSM	ENSMUSG00000017491.10	ENSMUST00000063750.8	3108	8	-59	4	-59	-4	multi-exon	FALSE	canonical	0	0	junction_4	0.880630571852711	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTGTGTGGGAGCTTT	NA	False	NA	NA	False	AATAAA	-12	NA	5894160	6038920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_5894906_5921200_5921350_5960687_5960830_6025924_6026086_6032852_6033030_6034504_6034710_6035439_6035599_6037495
ENSMUSG00000017493.13_0	chr11	+	2036	4	FSM	ENSMUSG00000017493.13	ENSMUST00000017637.13	3831	4	31	1764	31	708	multi-exon	FALSE	canonical	2	10	junction_3	1.69967317119759	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAGAACAAAACCAAAAAGT	4260	False	NA	1	True	TTTAAA	-5	NA	98932100	98943454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98932672_98939051_98939198_98939919_98940055_98942270
ENSMUSG00000017493.13_2	chr11	+	311	1	ISM	ENSMUSG00000017493.13	ENSMUST00000017637.13	3831	4	11067	1771	5000	701	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATCAGAACAAAACC	643	False	NA	-6	True	NA	NA	NA	98943136	98943447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98943100_98943400
ENSMUSG00000017499.16_0	chr11	+	2535	12	FSM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	34	2045	-14	-2	multi-exon	FALSE	canonical	3	550	junction_4	61.3919799860826	890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGTCTGGGCTGCATT	2	True	NA	6	True	AATATA	-15	NA	98798660	98812717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
ENSMUSG00000017499.16_1	chr11	+	2529	12	NIC	ENSMUSG00000017499.16	novel	4802	13	NA	NA	-11	-2	combination_of_known_junctions	FALSE	canonical	3	67	junction_4	177.064586432734	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGTCTGGGCTGCATT	5	True	NA	6	True	AATATA	-15	NA	98798663	98812717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802216_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
ENSMUSG00000017548.16_1	chr11	+	4353	16	FSM	ENSMUSG00000017548.16	ENSMUST00000017692.15	4373	16	-4	24	-4	-23	multi-exon	FALSE	canonical	3	1594	junction_3	192.466747488726	3438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTCTTCTGCTTTTC	NA	False	NA	13	True	CATAAA	-13	NA	79883927	79924925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_79884426_79886442_79886490_79886570_79886636_79889882_79889952_79898338_79898389_79901383_79901470_79904189_79904422_79905968_79906063_79910504_79910611_79912917_79913096_79915735_79915828_79915993_79916138_79916622_79916781_79919973_79920173_79920832_79920913_79922670
ENSMUSG00000017548.16_5	chr11	+	4283	15	FSM	ENSMUSG00000017548.16	ENSMUST00000163272.2	4303	15	-3	23	-3	-23	multi-exon	FALSE	canonical	3	72	junction_3	508.713027037397	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTCTTCTGCTTTTC	NA	False	NA	13	True	CATAAA	-13	NA	79883928	79924925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_79884426_79886442_79886490_79886570_79886636_79898338_79898389_79901383_79901470_79904189_79904422_79905968_79906063_79910504_79910611_79912917_79913096_79915735_79915828_79915993_79916138_79916622_79916781_79919973_79920173_79920832_79920913_79922670
ENSMUSG00000017548.16_89	chr11	+	1697	1	ISM	ENSMUSG00000017548.16	ENSMUST00000163272.2	4303	15	39297	23	7208	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTCTTCTGCTTTTC	NA	False	NA	13	True	CATAAA	-13	NA	79923228	79924925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_79923200_79924900
ENSMUSG00000017550.15_0	chr11	+	7240	23	FSM	ENSMUSG00000017550.15	ENSMUST00000017694.7	7272	23	13	19	13	-19	multi-exon	FALSE	canonical	3	77	junction_5	19.8640524191917	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAATGCTTGGTGTGTTA	6012	False	NA	6	True	ATTAAA	-1	NA	79980238	80026598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_79980663_79984980_79986849_79988778_79988876_79991139_79991302_79992607_79992735_79994085_79994168_79997079_79997265_79999308_79999464_80000189_80000350_80000772_80000962_80002300_80002398_80003574_80003664_80003900_80004041_80004981_80005133_80009790_80009968_80010292_80010430_80011507_80011602_80014892_80014958_80018082_80018264_80022029_80022209_80023290_80024133_80024854_80025014_80025118
ENSMUSG00000017550.15_2	chr11	+	7228	23	FSM	ENSMUSG00000017550.15	ENSMUST00000108239.7	7266	23	13	25	13	-22	multi-exon	FALSE	canonical	3	47	junction_12	23.2130360212169	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTAAATGCTTGGTGTG	6012	False	NA	3	True	AGTAAA	-12	NA	79980238	80026595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_79980663_79984980_79986849_79988778_79988876_79991139_79991302_79992607_79992735_79994085_79994168_79997079_79997265_79999308_79999464_80000189_80000350_80000772_80000962_80002300_80002398_80003574_80003655_80003900_80004041_80004981_80005133_80009790_80009968_80010292_80010430_80011507_80011602_80014892_80014958_80018082_80018264_80022029_80022209_80023290_80024133_80024854_80025014_80025118
ENSMUSG00000017550.15_27	chr11	+	5609	22	ISM	ENSMUSG00000017550.15	ENSMUST00000017694.7	7272	23	5965	16	5965	-16	3prime_fragment	FALSE	canonical	3	77	junction_4	20.1127208987276	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCTTGGTGTGTTAAAT	NA	False	NA	9	True	ATTAAA	-4	NA	79986190	80026601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_79986849_79988778_79988876_79991139_79991302_79992607_79992735_79994085_79994168_79997079_79997265_79999308_79999464_80000189_80000350_80000772_80000962_80002300_80002398_80003574_80003664_80003900_80004041_80004981_80005133_80009790_80009968_80010292_80010430_80011507_80011602_80014892_80014958_80018082_80018264_80022029_80022209_80023290_80024133_80024854_80025014_80025118
ENSMUSG00000017550.15_46	chr11	+	2763	5	ISM	ENSMUSG00000017550.15	ENSMUST00000151815.8	4572	19	25454	19	24335	-16	3prime_fragment	FALSE	canonical	3	116	junction_1	18.0900525151255	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCTTGGTGTGTTAAAT	5478	False	NA	9	True	ATTAAA	-4	NA	80018163	80026601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_80018264_80022029_80022209_80023290_80024133_80024854_80025014_80025118
ENSMUSG00000017550.15_47	chr11	+	2125	3	ISM	ENSMUSG00000017550.15	ENSMUST00000151815.8	4572	19	30934	25	29815	-22	3prime_fragment	FALSE	canonical	3	127	junction_2	17	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTAAATGCTTGGTGTG	NA	False	NA	3	True	AGTAAA	-12	NA	80023643	80026595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_80024133_80024854_80025014_80025118
ENSMUSG00000017561.17_0	chr11	-	2334	8	FSM	ENSMUSG00000017561.17	ENSMUST00000061283.15	2396	8	31	31	-22	-31	multi-exon	FALSE	canonical	0	0	junction_2	192.168081190846	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAAATAAAAAATGAAA	4519	False	NA	-34	True	NA	NA	NA	79971786	79937349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
ENSMUSG00000017561.17_3	chr11	-	2316	8	NIC	ENSMUSG00000017561.17	novel	2396	8	NA	NA	-8	-31	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	246.701505169833	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAAATAAAAAATGAAA	4533	False	NA	-34	True	NA	NA	NA	79971772	79937349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971613
ENSMUSG00000017615.13_0	chr11	-	3560	7	FSM	ENSMUSG00000017615.13	ENSMUST00000108277.3	3768	7	150	58	89	-58	multi-exon	FALSE	canonical	3	137	junction_6	14.2789666604026	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCATGTTTCCAGTGAG	NA	False	NA	-44	True	AATAAA	-16	NA	78427008	78413733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78416368_78418351_78418548_78419076_78419130_78419215_78419306_78419895_78420066_78420853_78421174_78426911
ENSMUSG00000017615.13_1	chr11	-	3578	7	FSM	ENSMUSG00000017615.13	ENSMUST00000017759.9	3720	7	85	57	85	-57	multi-exon	FALSE	canonical	3	43	junction_6	46.4997013132582	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCATGTTTCCAGTGAGC	NA	False	NA	-43	True	AATAAA	-17	NA	78427012	78413732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78416368_78418351_78418548_78419076_78419130_78419215_78419306_78419895_78420066_78420853_78421174_78426898
ENSMUSG00000017615.13_10	chr11	-	1974	1	ISM	ENSMUSG00000017615.13	ENSMUST00000017759.9	3720	7	11390	58	11390	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCATGTTTCCAGTGAG	6524	False	NA	-44	True	AATAAA	-16	NA	78415707	78413733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_78413700_78415700
ENSMUSG00000017615.13_12	chr11	-	3341	6	ISM	ENSMUSG00000017615.13	ENSMUST00000017759.9	3720	7	6048	56	6048	-56	3prime_fragment	FALSE	canonical	3	147	junction_2	10.6770782520313	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGTTTCCAGTGAGCA	1182	False	NA	-42	True	AATAAA	-18	NA	78421049	78413731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_78416368_78418351_78418548_78419076_78419130_78419215_78419306_78419895_78420066_78420853
ENSMUSG00000017631.20_1	chr11	-	6231	23	FSM	ENSMUSG00000017631.20	ENSMUST00000238684.2	6271	23	30	10	30	7	multi-exon	FALSE	canonical	3	102	junction_22	37.5075749925023	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACTCAGCCCCATGGT	NA	False	NA	-11	True	AATAAA	-26	NA	76514354	76307569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76513002
ENSMUSG00000017631.20_10	chr11	-	2068	1	ISM	ENSMUSG00000017631.20	ENSMUST00000094012.11	5236	22	90610	8	18411	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTCAGCCCCATGGTGT	NA	False	NA	-9	True	AATAAA	-28	NA	76309635	76307567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_76307600_76309600
ENSMUSG00000017631.20_2	chr11	-	5227	23	FSM	ENSMUSG00000017631.20	ENSMUST00000072740.13	5394	23	157	10	157	7	multi-exon	FALSE	canonical	3	154	junction_22	28.8783427101686	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACTCAGCCCCATGGT	6276	False	NA	-11	True	AATAAA	-26	NA	76462204	76307569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76461856
ENSMUSG00000017631.20_6	chr11	-	6137	24	NNC	ENSMUSG00000017631.20	novel	6271	23	NA	NA	-206	7	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_23	55.4650727135133	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACTCAGCCCCATGGT	NA	False	NA	-11	True	AATAAA	-26	NA	76514590	76307569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76513002_76514161_76514490
ENSMUSG00000017639.14_12	chr11	+	7041	13	NIC	ENSMUSG00000017639.14	novel	677	3	NA	NA	3	-7	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	20.8706332758097	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGACTTGTGTGAACTT	NA	False	NA	4	True	AATAAA	-15	NA	79551390	79588842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_79551683_79571613_79571838_79574166_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
ENSMUSG00000017639.14_2	chr11	+	7213	15	FSM	ENSMUSG00000017639.14	ENSMUST00000017783.13	7156	15	-60	3	-60	-3	multi-exon	FALSE	canonical	2	11	junction_1	43.0135835213359	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGTGTGAACTTCTGT	NA	False	NA	8	True	AATAAA	-19	NA	79481977	79588846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_79482261_79510454_79510543_79511292_79511382_79571613_79571838_79574166_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
ENSMUSG00000017639.14_33	chr11	+	3365	1	ISM	ENSMUSG00000017639.14	ENSMUST00000017783.13	7156	15	103440	7	34090	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGACTTGTGTGAACTT	6328	False	NA	4	True	AATAAA	-15	NA	79585477	79588842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_79585500_79588800
ENSMUSG00000017639.14_9	chr11	+	6975	13	NNC	ENSMUSG00000017639.14	novel	677	3	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	29.6014029322185	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGACTTGTGTGAACTT	NA	False	NA	4	True	AATAAA	-15	NA	79551387	79588842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_79551683_79571613_79571838_79574235_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
ENSMUSG00000017652.17_0	chr2	+	1425	9	FSM	ENSMUSG00000017652.17	ENSMUST00000017799.12	2986	9	16	1545	7	-251	multi-exon	FALSE	canonical	3	6	junction_1	6.06217782649107	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCGGTTACCTGATTTT	NA	False	NA	NA	False	NA	NA	NA	164897562	164913323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164897679_164904205_164904285_164904580_164904707_164904941_164905089_164905387_164905482_164908422_164908485_164911548_164911636_164911736_164911769_164912641
ENSMUSG00000017664.17_0	chr2	-	1942	10	NIC	ENSMUSG00000017664.17	novel	1843	11	NA	NA	14	-4	intron_retention	FALSE	canonical	3	63	junction_9	61.9452167365908	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACCAGCCTCTGGAGACT	5719	False	NA	-38	True	AATAAA	-14	NA	165129730	165118477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129703
ENSMUSG00000017664.17_1	chr2	-	1948	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109300.9	2008	10	58	2	13	-2	multi-exon	FALSE	canonical	3	110	junction_9	47.7596864973064	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCAGCCTCTGGAGACTAC	5718	False	NA	-36	True	AATAAA	-16	NA	165129731	165118475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125524_165129703
ENSMUSG00000017664.17_4	chr2	-	1923	9	ISM	ENSMUSG00000017664.17	ENSMUST00000109299.8	1926	10	4150	1	-5	-1	3prime_fragment	TRUE	canonical	3	229	junction_4	16.0657827384787	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCCTCTGGAGACTACC	9924	False	NA	-35	True	AATAAA	-17	NA	165125525	165118474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168
ENSMUSG00000017664.17_9	chr2	-	1989	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109298.8	1991	10	0	2	0	-2	multi-exon	FALSE	canonical	2	10	junction_9	78.2020175926143	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCAGCCTCTGGAGACTAC	5774	False	NA	-36	True	AATAAA	-16	NA	165129675	165118475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129603
ENSMUSG00000017667.10_0	chr2	-	5055	5	FSM	ENSMUSG00000017667.10	ENSMUST00000103084.4	8205	5	-30	3180	-30	-3180	multi-exon	FALSE	canonical	3	23	junction_1	3.24037034920393	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGATATTTGTTGTGTGA	4510	False	NA	-11	True	ATTAAA	-6	NA	165230209	165219363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_165223807_165224610_165224704_165225158_165225286_165228845_165228909_165229880
ENSMUSG00000017667.10_1	chr2	-	2871	1	ISM	ENSMUSG00000017667.10	ENSMUST00000103084.4	8205	5	7945	3180	7945	-3180	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGATATTTGTTGTGTGA	NA	False	NA	-11	True	ATTAAA	-6	NA	165222234	165219363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_165219400_165222200
ENSMUSG00000017667.10_2	chr2	-	5097	5	NNC	ENSMUSG00000017667.10	novel	8205	5	NA	NA	-39	-3180	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	10.1827059272082	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGATATTTGTTGTGTGA	4501	False	NA	-11	True	ATTAAA	-6	NA	165230218	165219363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_165223807_165224610_165224704_165225158_165225319_165228845_165228909_165229880
ENSMUSG00000017670.17_0	chr2	-	3448	21	FSM	ENSMUSG00000017670.17	ENSMUST00000094329.11	3466	21	13	5	13	-5	multi-exon	FALSE	canonical	3	269	junction_20	30.5759300757965	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGACTGCTTCCTATCC	NA	False	NA	-22	True	AATAAA	-10	NA	165168386	165131079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
ENSMUSG00000017670.17_1	chr2	-	3488	22	FSM	ENSMUSG00000017670.17	ENSMUST00000074046.13	3502	22	13	1	13	-1	multi-exon	TRUE	canonical	1	2	junction_12	97.9880829442692	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGCTTCCTATCCACAC	NA	False	NA	-18	True	AATAAA	-14	NA	165168386	165131075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165145585_165145622_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
ENSMUSG00000017670.17_6	chr2	-	3437	21	NIC	ENSMUSG00000017670.17	novel	3466	21	NA	NA	12	-5	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	74.0802774022884	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGACTGCTTCCTATCC	NA	False	NA	-22	True	AATAAA	-10	NA	165168387	165131079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_165132482_165134024_165134103_165136160_165136232_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
ENSMUSG00000017677.12_0	chr11	-	2453	4	FSM	ENSMUSG00000017677.12	ENSMUST00000150416.8	2338	4	-120	5	-120	-5	multi-exon	FALSE	canonical	3	470	junction_2	11.8977121983832	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTACTACATTGCCGAT	6119	False	NA	-29	True	ATTAAA	-7	NA	79133970	79130218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809
ENSMUSG00000017677.12_26	chr11	-	4758	8	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	1	-5	intron_retention	FALSE	canonical	3	351	junction_6	53.3008404421238	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTACTACATTGCCGAT	978	False	NA	-29	True	ATTAAA	-7	NA	79145494	79130218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUSG00000017677.12_6	chr11	-	3873	9	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	-5	intron_retention	FALSE	canonical	3	190	junction_4	93.9730679503442	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTACTACATTGCCGAT	976	False	NA	-29	True	ATTAAA	-7	NA	79145496	79130218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUSG00000017677.12_7	chr11	-	2315	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.950895457782	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTACTACATTGCCGAT	976	False	NA	-29	True	ATTAAA	-7	NA	79145496	79130218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_79130435_79130573_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUSG00000017677.12_8	chr11	-	2454	9	FSM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	1	21	-1	-5	multi-exon	FALSE	canonical	3	217	junction_4	86.5338625914734	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTACTACATTGCCGAT	976	False	NA	-29	True	ATTAAA	-7	NA	79145496	79130218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUSG00000017677.12_9	chr11	-	2632	10	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	142.650916403006	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACTACATTGCCGATATT	977	False	NA	-26	True	ATTAAA	-10	NA	79145495	79130215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134225_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUSG00000017679.17_0	chr2	+	4495	5	FSM	ENSMUSG00000017679.17	ENSMUST00000109408.10	1999	5	14	-2510	-13	-2	multi-exon	FALSE	canonical	3	17	junction_1	3.8405728739343	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTGCATTGTGGTTTTTA	5713	False	NA	NA	False	AATAAA	-15	NA	163444255	163460930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_163444335_163449131_163449595_163453678_163453873_163455654_163455766_163457282
ENSMUSG00000017679.17_5	chr2	+	2817	1	ISM	ENSMUSG00000017679.17	ENSMUST00000171696.8	4522	5	13880	2	4674	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTGCATTGTGGTTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	163458113	163460930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_163458100_163460900
ENSMUSG00000017679.17_6	chr2	+	4494	5	FSM	ENSMUSG00000017679.17	ENSMUST00000171696.8	4522	5	26	2	-9	-2	multi-exon	FALSE	canonical	2	4	junction_1	8.69985632065266	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTGCATTGTGGTTTTTA	5717	False	NA	NA	False	AATAAA	-15	NA	163444259	163460930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_163444335_163449128_163449595_163453678_163453873_163455654_163455766_163457282
ENSMUSG00000017686.18_0	chr11	+	3003	19	FSM	ENSMUSG00000017686.18	ENSMUST00000092857.13	3687	19	6	678	6	-4	multi-exon	FALSE	canonical	3	336	junction_18	65.0695971182841	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATCTTGAGGTTTTTTGT	NA	False	NA	5	True	AATAAA	-16	NA	80099915	80157634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80156567
ENSMUSG00000017686.18_1	chr11	+	3092	20	FSM	ENSMUSG00000017686.18	ENSMUST00000017831.16	3029	20	-25	-38	10	-7	multi-exon	FALSE	canonical	3	150	junction_18	134.011803341732	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGATCTTGAGGTTTTT	NA	False	NA	2	True	AATAAA	-13	NA	80099919	80157631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80156567
ENSMUSG00000017686.18_3	chr11	+	3122	20	FSM	ENSMUSG00000017686.18	ENSMUST00000055056.16	4260	20	36	1102	7	-7	multi-exon	FALSE	canonical	3	75	junction_18	152.933077899418	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGATCTTGAGGTTTTT	NA	False	NA	2	True	AATAAA	-13	NA	80099916	80157631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80148339_80148463_80156567
ENSMUSG00000017686.18_6	chr11	+	3188	21	FSM	ENSMUSG00000017686.18	ENSMUST00000077451.14	3297	21	66	43	1	2	multi-exon	FALSE	canonical	3	23	junction_19	176.261425161605	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTTTTCAAGTATTTAAA	NA	False	NA	-34	True	AATAAA	-19	NA	80099910	80157595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80148339_80148463_80156567
ENSMUSG00000017692.9_1	chr11	+	1036	3	NIC	ENSMUSG00000017692.9	novel	3736	9	NA	NA	-30	-313	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGAGTGTCAGGTTCTC	7795	False	NA	NA	False	NA	NA	NA	80191707	80214671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_80192098_80210383_80210543_80214184
ENSMUSG00000017692.9_2	chr11	+	3760	9	FSM	ENSMUSG00000017692.9	ENSMUST00000017836.8	3736	9	-26	2	-26	-2	multi-exon	FALSE	canonical	2	4	junction_6	1.93649167310371	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCAGGGAGTGACCTCAA	7799	False	NA	NA	False	ATTAAA	-21	NA	80191711	80246779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80192098_80193489_80193514_80210383_80210543_80214184_80214410_80221382_80221532_80222620_80222734_80228312_80228414_80237651_80237713_80244237
ENSMUSG00000017692.9_3	chr11	+	3732	8	NIC	ENSMUSG00000017692.9	novel	3736	9	NA	NA	-23	-3	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	2.25876975726313	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCAGGGAGTGACCTCA	7802	False	NA	NA	False	ATTAAA	-20	NA	80191714	80246778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_80192098_80210383_80210543_80214184_80214410_80221382_80221532_80222620_80222734_80228312_80228414_80237651_80237713_80244237
ENSMUSG00000017692.9_5	chr11	+	2232	1	ISM	ENSMUSG00000017692.9	ENSMUST00000017836.8	3736	9	52806	6	7315	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTATTCAGGGAGTGACC	NA	False	NA	NA	False	ATTAAA	-17	NA	80244543	80246775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_80244500_80246800
ENSMUSG00000017692.9_6	chr11	+	1080	4	ISM	ENSMUSG00000017692.9	ENSMUST00000017836.8	3736	9	-52	32112	-52	-315	5prime_fragment	FALSE	canonical	2	6	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAAGAGTGTCAGGTTC	7773	False	NA	NA	False	NA	NA	NA	80191685	80214669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_80192098_80193489_80193514_80210383_80210543_80214184
ENSMUSG00000017697.4_0	chr2	-	1434	12	FSM	ENSMUSG00000017697.4	ENSMUST00000017841.4	1688	12	23	231	23	-231	multi-exon	FALSE	canonical	3	45	junction_1	12.1526108476007	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTGCAGCACATGGTGAA	NA	False	NA	-7	True	AATAAA	-17	NA	163592136	163568734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_163568969_163569463_163569564_163570036_163570167_163571931_163571997_163572217_163572320_163572400_163572473_163573024_163573153_163574176_163574293_163574773_163574918_163577268_163577392_163580082_163580145_163591978
ENSMUSG00000017697.4_2	chr2	-	1446	12	NNC	ENSMUSG00000017697.4	novel	1688	12	NA	NA	13	-232	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	19.317700528764	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTTGCAGCACATGGTGA	NA	False	NA	-8	True	AATAAA	-16	NA	163592146	163568735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_163568972_163569463_163569564_163570036_163570167_163571931_163571997_163572217_163572320_163572400_163572473_163573024_163573153_163574176_163574293_163574773_163574918_163577268_163577392_163580082_163580145_163591978
ENSMUSG00000017697.4_8	chr2	-	1731	11	NIC	ENSMUSG00000017697.4	novel	1688	12	NA	NA	58	-394	intron_retention	FALSE	canonical	3	45	junction_10	11.682893477217	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATATTGACCTTCATTCCT	NA	False	NA	NA	False	GATAAA	-16	NA	163592101	163568897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_163569564_163570036_163570167_163571931_163571997_163572217_163572320_163572400_163572473_163573024_163573153_163574176_163574293_163574773_163574918_163577268_163577392_163580082_163580145_163591978
ENSMUSG00000017707.10_0	chr2	-	2250	10	FSM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	39	1394	33	-1394	multi-exon	FALSE	canonical	3	366	junction_6	56.7393868903371	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTCTTGTTTGTTTGTGT	NA	False	NA	-14	True	ATTAAA	-11	NA	163487012	163466585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
ENSMUSG00000017707.10_1	chr2	-	631	1	ISM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	19839	1390	19833	-1390	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTTTGTTTGTGTATTT	5440	False	NA	-10	True	ATTAAA	-15	NA	163467212	163466581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_163466600_163467200
ENSMUSG00000017715.12_0	chr11	+	2285	10	FSM	ENSMUSG00000017715.12	ENSMUST00000132676.8	2863	10	578	0	-15	0	multi-exon	TRUE	canonical	1	116	junction_9	67.5268579397108	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117877695	117914837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905399_117905549_117910432_117910559_117914230
ENSMUSG00000017715.12_11	chr11	+	2195	10	FSM	ENSMUSG00000017715.12	ENSMUST00000017859.10	2197	10	0	2	0	-2	multi-exon	FALSE	canonical	1	46	junction_7	99.2782596518803	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTGTTGCTCAAGTG	NA	False	NA	14	True	AATAAA	-12	NA	117877710	117914835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905472_117905549_117910432_117910559_117914230
ENSMUSG00000017715.12_51	chr11	+	2735	3	FSM	ENSMUSG00000017715.12	ENSMUST00000155507.2	3113	3	378	0	378	0	multi-exon	FALSE	canonical	1	116	junction_2	125.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117903546	117914837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117905549_117910432_117910559_117914230
ENSMUSG00000017716.16_0	chr11	+	881	4	FSM	ENSMUSG00000017716.16	ENSMUST00000081387.11	947	4	63	3	-5	-3	multi-exon	FALSE	canonical	3	1683	junction_1	206.515536138729	697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTGTAAGCTCTGTCTG	NA	False	NA	26	True	AATAAA	-15	NA	117740139	117746555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117740288_117740579_117740690_117743488_117743607_117746050
ENSMUSG00000017716.16_2	chr11	+	3327	3	FSM	ENSMUSG00000017716.16	ENSMUST00000093906.5	3334	3	-5	12	-5	-1	multi-exon	FALSE	canonical	3	1683	junction_1	252.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTAAGCTCTGTCTGTC	NA	False	NA	28	True	AATAAA	-17	NA	117740139	117746557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117740288_117740579_117740690_117743488
ENSMUSG00000017716.16_21	chr11	+	1398	1	NIC	ENSMUSG00000017716.16	novel	947	4	NA	NA	5010	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGACTGTAAGCTCTGT	NA	False	NA	23	True	AATAAA	-12	NA	117745154	117746552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117745200_117746600
ENSMUSG00000017716.16_5	chr11	+	768	3	NIC	ENSMUSG00000017716.16	novel	947	4	NA	NA	-1	-2	combination_of_known_splicesites	FALSE	canonical	3	60	junction_1	950.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGTAAGCTCTGTCTGT	NA	False	NA	27	True	AATAAA	-16	NA	117740143	117746556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117740288_117743488_117743607_117746050
ENSMUSG00000017718.16_17	chr11	+	2169	8	NIC	ENSMUSG00000017718.16	novel	2327	11	NA	NA	3	-10	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	16.1308425580517	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACATAACTGGGGTTTT	NA	False	NA	5	True	NA	NA	NA	117723058	117730724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117723276_117723353_117723403_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
ENSMUSG00000017718.16_18	chr11	+	2203	9	ISM	ENSMUSG00000017718.16	ENSMUST00000073388.13	2327	11	6367	4	18	-4	3prime_fragment	FALSE	canonical	3	36	junction_7	7.01338006955277	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACTGGGGTTTTCTGTTT	NA	False	NA	11	True	NA	NA	NA	117723116	117730730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
ENSMUSG00000017718.16_24	chr11	+	1906	6	ISM	ENSMUSG00000017718.16	ENSMUST00000073388.13	2327	11	9023	6	2674	-6	3prime_fragment	FALSE	canonical	3	36	junction_4	6.33719180710194	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATAACTGGGGTTTTCTGT	NA	False	NA	9	True	NA	NA	NA	117725772	117730728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
ENSMUSG00000017718.16_3	chr11	+	2307	11	FSM	ENSMUSG00000017718.16	ENSMUST00000073388.13	2327	11	14	6	14	-6	multi-exon	FALSE	canonical	3	29	junction_1	8.17312669668102	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATAACTGGGGTTTTCTGT	NA	False	NA	9	True	NA	NA	NA	117716763	117730728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117716833_117718904_117718996_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
ENSMUSG00000017718.16_5	chr11	+	2449	11	NNC	ENSMUSG00000017718.16	novel	2327	11	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	15.5254629560603	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATAACTGGGGTTTTCTGT	NA	False	NA	9	True	NA	NA	NA	117716747	117730728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_117716833_117718904_117718996_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726760_117727233_117727339_117729318
ENSMUSG00000017718.16_7	chr11	+	2222	10	NIC	ENSMUSG00000017718.16	novel	2327	11	NA	NA	12	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	15.3984126166015	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGGGTTTTCTGTTTGT	NA	False	NA	13	True	NA	NA	NA	117716761	117730732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117716833_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
ENSMUSG00000017721.16_0	chr2	+	2316	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	-5	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	51.0299476342623	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCGTTGCTTCCTTCCTA	5133	False	NA	6	True	AATAAA	-15	NA	164339460	164350220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349527_164349750
ENSMUSG00000017721.16_5	chr2	+	1695	9	FSM	ENSMUSG00000017721.16	ENSMUST00000117066.8	1712	9	6	11	-5	-11	multi-exon	FALSE	canonical	3	60	junction_7	35.1212186576719	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACACAAACACATCACTG	5133	False	NA	NA	False	ATTAAA	-13	NA	164339460	164345029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397
ENSMUSG00000017721.16_6	chr2	+	2475	14	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	-4	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	55.0155437960182	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCGTTGCTTCCTTCCTA	5134	False	NA	6	True	AATAAA	-15	NA	164339461	164350220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349454_164349485_164349719_164349750
ENSMUSG00000017721.16_8	chr2	+	1012	8	ISM	ENSMUSG00000017721.16	ENSMUST00000117066.8	1712	9	-4	1531	-4	-50	5prime_fragment	FALSE	canonical	3	60	junction_7	30.8399422959306	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGATCAATAACTCTCGAAA	5123	False	NA	NA	False	NA	NA	NA	164339450	164343509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404
ENSMUSG00000017723.12_21	chr2	+	618	4	ISM	ENSMUSG00000017723.12	ENSMUST00000017867.10	849	5	729	5	289	-5	3prime_fragment	FALSE	canonical	3	478	junction_2	34.322004603461	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAACACCTGCTTGCCTCA	842	False	NA	21	True	AATAAA	-27	NA	164405227	164410425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_164405372_164405976_164406133_164407711_164407859_164410254
ENSMUSG00000017723.12_22	chr2	+	653	2	ISM	ENSMUSG00000017723.12	ENSMUST00000109345.9	558	4	2744	4	2439	-4	3prime_fragment	FALSE	canonical	3	559	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACACCTGCTTGCCTCAC	2097	False	NA	22	True	AATAAA	-28	NA	164407377	164410426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_164407859_164410254
ENSMUSG00000017723.12_6	chr2	+	726	5	FSM	ENSMUSG00000017723.12	ENSMUST00000017867.10	849	5	114	9	-6	-9	multi-exon	FALSE	canonical	3	478	junction_3	30.4251129825347	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTATAACACCTGCTTGC	227	False	NA	17	True	AATAAA	-23	NA	164404612	164410421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164410254
ENSMUSG00000017723.12_8	chr2	+	560	3	FSM	ENSMUSG00000017723.12	ENSMUST00000109344.9	429	3	-135	4	-15	-4	multi-exon	FALSE	canonical	3	78	junction_1	240.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACACCTGCTTGCCTCAC	98	False	NA	22	True	AATAAA	-28	NA	164404483	164410426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164404725_164407711_164407859_164410254
ENSMUSG00000017723.12_9	chr2	+	709	4	NIC	ENSMUSG00000017723.12	novel	849	5	NA	NA	-8	-4	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	229.843908386153	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACACCTGCTTGCCTCAC	105	False	NA	22	True	AATAAA	-28	NA	164404490	164410426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_164404725_164405976_164406133_164407711_164407859_164410254
ENSMUSG00000017724.15_0	chr11	-	2077	11	ISM	ENSMUSG00000017724.15	ENSMUST00000017868.7	2395	13	994	-3	11	-2	3prime_fragment	TRUE	canonical	2	11	junction_8	4.15210789840534	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATTTGCTCTTTGCTTCC	277	False	NA	-3	True	AATAAA	-22	NA	101675203	101660569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055
ENSMUSG00000017724.15_10	chr11	-	2255	13	FSM	ENSMUSG00000017724.15	ENSMUST00000017868.7	2395	13	140	0	-9	0	multi-exon	FALSE	canonical	2	8	junction_11	4.74926894959167	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTATTTGCTCTTTGCT	NA	False	NA	-6	True	AATAAA	-19	NA	101676057	101660572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055_101675150_101675342_101675454_101675933
ENSMUSG00000017724.15_15	chr11	-	1974	11	NIC	ENSMUSG00000017724.15	novel	2336	13	NA	NA	89	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	6.37887137352682	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTATTTGCTCTTTGC	355	False	NA	-7	True	AATAAA	-18	NA	101675125	101660573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665054_101666143_101666268_101667918_101667973_101674792_101674841_101675055
ENSMUSG00000017724.15_2	chr11	-	2238	13	FSM	ENSMUSG00000017724.15	ENSMUST00000107176.8	2377	13	140	-1	-9	1	multi-exon	FALSE	canonical	2	8	junction_11	4.75803414120673	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTATTTGCTCTTTGCTT	NA	False	NA	-5	True	AATAAA	-20	NA	101676057	101660571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665054_101666143_101666271_101667918_101667973_101674792_101674841_101675055_101675150_101675342_101675454_101675933
ENSMUSG00000017724.15_3	chr11	-	2134	12	ISM	ENSMUSG00000017724.15	ENSMUST00000017868.7	2395	13	740	1	-140	-1	3prime_fragment	FALSE	canonical	2	8	junction_11	4.66745369199761	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTATTTGCTCTTTGC	23	False	NA	-7	True	AATAAA	-18	NA	101675457	101660573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055_101675150_101675342
ENSMUSG00000017724.15_6	chr11	-	2100	12	NIC	ENSMUSG00000017724.15	novel	2395	13	NA	NA	-104	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	6.20050651090179	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTCTATTTGCTCTTTG	59	False	NA	-8	True	AATAAA	-17	NA	101675421	101660574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055_101675153_101675342
ENSMUSG00000017737.3_1	chr2	+	2157	7	ISM	ENSMUSG00000017737.3	ENSMUST00000017881.3	3175	13	2584	5	107	-5	3prime_fragment	FALSE	canonical	1	2	junction_1	0.816496580927726	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTATGTGTGTGTGTGTGT	6690	False	NA	NA	False	AATAAA	-22	NA	164792722	164797765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_164792922_164793026_164793183_164794339_164794674_164794774_164794915_164795183_164795335_164795438_164795543_164796692
ENSMUSG00000017747.14_1	chr11	-	2454	9	FSM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	0	8	0	-8	multi-exon	FALSE	canonical	3	37	junction_7	5.82961190818051	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATAAATATTAATGTATG	NA	False	NA	NA	False	NA	NA	NA	100661783	100656865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100657851_100658109_100658196_100658839_100658974_100659043_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661704
ENSMUSG00000017747.14_2	chr11	-	2455	9	NIC	ENSMUSG00000017747.14	novel	2462	9	NA	NA	13	-3	combination_of_known_junctions	FALSE	canonical	3	5	junction_8	14.3418095092635	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATTAATGTATGTATTT	NA	False	NA	NA	False	NA	NA	NA	100661755	100656860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_100657851_100658109_100658196_100658839_100658974_100659043_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661680
ENSMUSG00000017747.14_4	chr11	-	764	1	ISM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	4154	8	1910	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATAAATATTAATGTATG	NA	False	NA	NA	False	NA	NA	NA	100657629	100656865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100656900_100657600
ENSMUSG00000017747.14_5	chr11	-	2961	7	NIC	ENSMUSG00000017747.14	novel	2462	9	NA	NA	3	-3	intron_retention	FALSE	canonical	3	37	junction_5	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATTAATGTATGTATTT	NA	False	NA	NA	False	NA	NA	NA	100661765	100656860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_100657851_100658109_100658196_100658839_100659116_100659210_100660356_100660481_100660604_100660895_100661177_100661704
ENSMUSG00000017747.14_8	chr11	-	1700	6	ISM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	1695	13	-549	-13	3prime_fragment	FALSE	canonical	3	41	junction_3	4.28952211790544	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATATATATAAATATTAAT	NA	False	NA	NA	False	NA	NA	NA	100660088	100656870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100657851_100658109_100658196_100658839_100658974_100659043_100659116_100659210_100659404_100659853
ENSMUSG00000017747.14_9	chr11	-	2536	8	NIC	ENSMUSG00000017747.14	novel	2462	9	NA	NA	0	4	intron_retention	FALSE	canonical	3	37	junction_6	6.0810847582265	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTATGTATTTTATGTTA	NA	False	NA	NA	False	NA	NA	NA	100661783	100656853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_100657851_100658109_100658196_100658839_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661704
ENSMUSG00000017754.14_10	chr2	-	1684	15	FSM	ENSMUSG00000017754.14	ENSMUST00000109316.8	2226	15	539	3	-207	-3	multi-exon	FALSE	canonical	3	336	junction_14	23.0625812315366	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGGGTTTCTCTAGCT	NA	False	NA	-4	True	NA	NA	NA	164698923	164681440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806
ENSMUSG00000017754.14_3	chr2	-	1756	16	FSM	ENSMUSG00000017754.14	ENSMUST00000059954.14	1809	16	50	3	-28	-3	multi-exon	FALSE	canonical	3	278	junction_15	32.6696597268271	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGGGTTTCTCTAGCT	NA	False	NA	-4	True	NA	NA	NA	164699581	164681440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
ENSMUSG00000017754.14_4	chr2	-	1773	16	NIC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-6	-3	combination_of_known_junctions	FALSE	canonical	2	3	junction_15	95.1360195836583	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGGGTTTCTCTAGCT	NA	False	NA	-4	True	NA	NA	NA	164699559	164681440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699464
ENSMUSG00000017756.10_110	chr13	+	1569	1	ISM	ENSMUSG00000017756.10	ENSMUST00000017900.9	5142	24	51475	14	1709	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTTAAGGAACTTCGT	6719	False	NA	90	True	AGTAAA	-15	NA	73963290	73964859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_73963300_73964900
ENSMUSG00000017756.10_2	chr13	+	5107	24	FSM	ENSMUSG00000017756.10	ENSMUST00000017900.9	5142	24	21	14	-5	-2	multi-exon	FALSE	canonical	3	635	junction_9	57.8026758755535	1648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTTAAGGAACTTCGT	NA	False	NA	90	True	AGTAAA	-15	NA	73911836	73964859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_73912010_73932637_73932733_73933162_73933286_73936683_73936831_73938059_73938115_73938768_73938900_73940668_73940911_73942042_73942255_73943216_73943385_73943722_73943822_73944885_73944944_73945645_73945821_73946537_73946657_73947061_73947161_73947731_73947852_73948503_73948609_73949046_73949216_73953532_73953729_73954147_73954318_73954424_73954557_73957103_73957212_73958024_73958204_73961657_73961792_73962961
ENSMUSG00000017760.17_1	chr2	+	1815	15	ISM	ENSMUSG00000017760.17	ENSMUST00000103092.9	3646	16	907	1451	1	-438	3prime_fragment	FALSE	canonical	3	800	junction_1	78.7051135439063	1101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGGGCTCTTCTCTGTG	NA	False	NA	15	True	ATTAAA	-15	NA	164675727	164681501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ENSMUSG00000017760.17_29	chr2	+	1778	14	ISM	ENSMUSG00000017760.17	ENSMUST00000103093.10	2534	15	1151	438	-6	-438	3prime_fragment	FALSE	canonical	3	937	junction_10	54.6384566651142	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGGGCTCTTCTCTGTG	NA	False	NA	15	True	ATTAAA	-15	NA	164675943	164681501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ENSMUSG00000017764.3_0	chr2	+	2366	2	FSM	ENSMUSG00000017764.3	ENSMUST00000017908.3	2705	2	335	4	8	-4	multi-exon	FALSE	canonical	3	571	junction_1	0	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTCGTGTCTTGTCTGG	8862	False	NA	12	True	AATAAA	-15	NA	164664940	164668787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164665121_164666601
ENSMUSG00000017764.3_1	chr2	+	1391	1	ISM	ENSMUSG00000017764.3	ENSMUST00000017908.3	2705	2	2791	4	2464	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTCGTGTCTTGTCTGG	NA	False	NA	12	True	AATAAA	-15	NA	164667396	164668787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_164667400_164668800
ENSMUSG00000017765.18_19	chr8	-	3804	24	FSM	ENSMUSG00000017765.18	ENSMUST00000034370.17	3811	24	8	-1	8	1	multi-exon	FALSE	canonical	2	4	junction_23	38.1304595706627	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGCTGCTCCGGCTCT	NA	False	NA	-3	True	AATAAA	-19	NA	106692721	106670223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106670806_106670906_106671041_106671153_106671339_106671766_106671875_106671971_106672104_106672192_106672363_106672476_106672673_106673322_106673492_106673688_106673794_106674124_106674245_106674484_106674584_106675769_106675889_106676285_106676461_106676828_106676887_106677136_106677236_106677327_106677493_106678053_106678269_106678411_106678654_106680439_106680571_106682058_106682114_106682212_106682360_106685989_106686122_106687307_106687403_106692550
ENSMUSG00000017765.18_2	chr8	-	3800	24	FSM	ENSMUSG00000017765.18	ENSMUST00000116429.9	3755	24	-48	3	5	0	multi-exon	FALSE	canonical	3	126	junction_15	19.3746272602721	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTGCTCCGGCTC	NA	False	NA	-4	True	AATAAA	-18	NA	106692724	106670224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106670806_106670906_106671041_106671153_106671339_106671766_106671875_106671971_106672104_106672192_106672363_106672476_106672673_106673322_106673492_106673688_106673794_106674124_106674245_106674484_106674584_106675769_106675889_106676285_106676461_106676828_106676887_106677136_106677236_106677327_106677493_106678053_106678269_106678411_106678654_106680439_106680571_106682058_106682114_106682212_106682360_106685989_106686122_106687307_106687403_106692556
ENSMUSG00000017774.20_0	chr11	+	4623	32	FSM	ENSMUSG00000017774.20	ENSMUST00000102505.10	4652	32	27	2	27	0	multi-exon	FALSE	canonical	3	31	junction_1	55.4580209849872	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAGTCTTCCTGTGAGT	7864	False	NA	13	True	AATAAA	-17	NA	75541356	75564734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75541591_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
ENSMUSG00000017774.20_32	chr11	+	4557	32	FSM	ENSMUSG00000017774.20	ENSMUST00000108431.3	4718	32	161	0	-115	0	multi-exon	FALSE	canonical	3	104	junction_1	44.4739631998939	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAGTCTTCCTGTGAGT	NA	False	NA	13	True	AATAAA	-17	NA	75546859	75564734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75547028_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
ENSMUSG00000017774.20_8	chr11	+	4528	32	FSM	ENSMUSG00000017774.20	ENSMUST00000069057.13	4547	32	17	2	17	0	multi-exon	FALSE	canonical	3	188	junction_1	33.5644192461903	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAGTCTTCCTGTGAGT	8860	False	NA	13	True	AATAAA	-17	NA	75542352	75564734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75542492_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
ENSMUSG00000017776.16_0	chr11	+	3601	3	FSM	ENSMUSG00000017776.16	ENSMUST00000017920.14	3642	3	43	-2	-9	2	multi-exon	FALSE	canonical	3	225	junction_2	120.5	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTGGCTTGGTGATC	2141	False	NA	12	True	NA	NA	NA	75570127	75596893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75570491_75583022_75583559_75594191
ENSMUSG00000017776.16_1	chr11	+	3431	3	FSM	ENSMUSG00000017776.16	ENSMUST00000108425.8	4290	3	18	841	-9	2	multi-exon	FALSE	canonical	3	229	junction_2	118.5	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTGGCTTGGTGATC	2141	False	NA	12	True	NA	NA	NA	75570127	75596893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75570491_75583022_75583389_75594191
ENSMUSG00000017776.16_18	chr11	+	1947	1	ISM	ENSMUSG00000017776.16	ENSMUST00000108425.8	4290	3	24837	841	24579	2	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTGGCTTGGTGATC	31	False	NA	12	True	NA	NA	NA	75594946	75596893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75594900_75596900
ENSMUSG00000017778.15_0	chr13	-	406	3	FSM	ENSMUSG00000017778.15	ENSMUST00000131011.2	540	3	129	5	-1	0	multi-exon	FALSE	canonical	3	10515	junction_1	2196	1336	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATTCAATGCCTCGTCT	NA	False	NA	-19	True	AATAAA	-11	NA	86194894	86192939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_86193028_86193845_86193989_86194719
ENSMUSG00000017781.18_0	chr11	+	1657	11	NIC	ENSMUSG00000017781.18	novel	3761	12	NA	NA	-4	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	204.812109017021	602	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCATTGCATCTCTGGTTA	NA	False	NA	7	True	AATAAA	-14	NA	75478940	75517552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_75479179_75483014_75483046_75489005_75489155_75494214_75494307_75499930_75500006_75503045_75503130_75510065_75510144_75510281_75510393_75511079_75511203_75516290_75516357_75516942
ENSMUSG00000017801.16_0	chr11	+	1795	8	FSM	ENSMUSG00000017801.16	ENSMUST00000107302.8	1826	8	26	5	-1	-5	multi-exon	FALSE	canonical	0	0	junction_1	91.1912097446562	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGGATTGTTTTAAGTC	8249	False	NA	13	True	AATAAA	-17	NA	100978128	100983028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100978194_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUSG00000017801.16_4	chr11	+	1956	8	FSM	ENSMUSG00000017801.16	ENSMUST00000017945.15	1965	8	4	5	0	-5	multi-exon	FALSE	canonical	3	155	junction_1	39.4052726193346	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGGATTGTTTTAAGTC	8250	False	NA	13	True	AATAAA	-17	NA	100978129	100983028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUSG00000017802.15_0	chr11	-	3084	9	FSM	ENSMUSG00000017802.15	ENSMUST00000017946.6	3165	9	67	14	17	-14	multi-exon	FALSE	canonical	3	80	junction_5	11.6162601554889	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTTTAAGAGACTGCTG	9862	False	NA	-13	True	AATAAA	-15	NA	101010652	100987352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100993708_100993836_100994715_100994747_100997132_100997240_101010366
ENSMUSG00000017802.15_1	chr11	-	2948	8	FSM	ENSMUSG00000017802.15	ENSMUST00000107295.10	3179	8	24	207	24	-16	multi-exon	FALSE	canonical	3	12	junction_5	32.1222155944119	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATCTTTTAAGAGACTGC	9869	False	NA	-15	True	AATAAA	-13	NA	101010645	100987354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100994715_100994747_100997132_100997240_101010366
ENSMUSG00000017802.15_2	chr11	-	1321	1	ISM	ENSMUSG00000017802.15	ENSMUST00000107295.10	3179	8	21996	205	21918	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTTTAAGAGACTGCTG	NA	False	NA	-13	True	AATAAA	-15	NA	100988673	100987352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100987400_100988700
ENSMUSG00000017802.15_6	chr11	-	2930	8	NIC	ENSMUSG00000017802.15	novel	3165	9	NA	NA	-33	-7	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	29.3250606763817	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGAGACTGCTGTTTCGTT	9890	False	NA	-6	True	AATAAA	-22	NA	101010624	100987345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_100989447_100990498_100990582_100991747_100991886_100992831_100992917_100993708_100993836_100994715_100994747_100997132_100997240_101010366
ENSMUSG00000017831.9_0	chr17	+	2311	6	FSM	ENSMUSG00000017831.9	ENSMUST00000017975.7	2366	6	46	9	-7	-9	multi-exon	FALSE	canonical	3	761	junction_1	72.5131712173726	1116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAACACTGAGTTTT	NA	False	NA	NA	False	AATAAA	-8	NA	53786307	53814699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_53786637_53790848_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
ENSMUSG00000017837.13_2	chr11	+	2050	4	FSM	ENSMUSG00000017837.13	ENSMUST00000017981.10	2097	4	39	8	-5	-8	multi-exon	FALSE	canonical	3	328	junction_1	10.0332779621949	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAAAGTTTCCCGTCCC	NA	False	NA	9	True	AATAAA	-16	NA	100513740	100518425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100513835_100515017_100515126_100515768_100516011_100516819
ENSMUSG00000017837.13_3	chr11	+	1961	5	NIC	ENSMUSG00000017837.13	novel	988	6	NA	NA	-7	-7	combination_of_known_junctions	FALSE	canonical	3	52	junction_3	123.71413621733	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAAGTTTCCCGTCCCC	NA	False	NA	10	True	AATAAA	-17	NA	100513738	100518426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_100513835_100515017_100515126_100515768_100515843_100515934_100516011_100516819
ENSMUSG00000017843.15_13	chr12	+	4544	17	NIC	ENSMUSG00000017843.15	novel	2790	13	NA	NA	37	-2	combination_of_known_junctions	FALSE	canonical	3	61	junction_16	408.246995549263	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCGCTCTATGAAACTAAA	NA	False	NA	1	True	AATAAA	-15	NA	110413590	110549494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_110413820_110414405_110414472_110432282_110432455_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110541178_110541296_110544534_110544603_110546834
ENSMUSG00000017843.15_3	chr12	+	1854	14	NIC	ENSMUSG00000017843.15	novel	2790	13	NA	NA	25	0	combination_of_known_junctions	TRUE	canonical	3	197	junction_1	321.388242421629	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCCTCTTGTATAAGTA	NA	False	NA	13	True	AATAAA	-18	NA	110413578	110537345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_110413820_110414405_110414472_110432282_110432455_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
ENSMUSG00000017843.15_40	chr12	+	1545	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	45	777	44	0	multi-exon	FALSE	canonical	3	738	junction_1	90.3704039902189	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCCTCTTGTATAAGTA	4965	False	NA	13	True	AATAAA	-18	NA	110452216	110537345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
ENSMUSG00000017843.15_43	chr12	+	4244	15	FSM	ENSMUSG00000017843.15	ENSMUST00000221074.2	1971	15	-78	-2195	42	-7	multi-exon	FALSE	canonical	3	61	junction_14	373.202494687289	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTATCGCTCTATGAAA	4963	False	NA	-4	True	AATAAA	-10	NA	110452214	110549489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110541178_110541296_110544534_110544603_110546834
ENSMUSG00000017843.15_45	chr12	+	4057	13	FSM	ENSMUSG00000017843.15	ENSMUST00000109832.3	4108	13	44	7	44	-7	multi-exon	FALSE	canonical	3	190	junction_12	229.453638502906	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTATCGCTCTATGAAA	4965	False	NA	-4	True	AATAAA	-10	NA	110452216	110549489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110546834
ENSMUSG00000017843.15_5	chr12	+	4355	15	NIC	ENSMUSG00000017843.15	novel	2790	13	NA	NA	36	-7	combination_of_known_junctions	FALSE	canonical	3	190	junction_14	348.147077763267	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTATCGCTCTATGAAA	NA	False	NA	-4	True	AATAAA	-10	NA	110413589	110549489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_110413820_110414405_110414472_110432282_110432455_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110546834
ENSMUSG00000017843.15_73	chr12	+	2177	1	ISM	ENSMUSG00000017843.15	ENSMUST00000109832.3	4108	13	95145	2	95025	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCGCTCTATGAAACTAAA	NA	False	NA	1	True	AATAAA	-15	NA	110547317	110549494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110547300_110549500
ENSMUSG00000017858.13_0	chr2	+	2104	13	FSM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	133	11	-4	-11	multi-exon	FALSE	canonical	3	222	junction_1	53.5787971122906	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTATAAAATGGTCTGTC	NA	False	NA	8	True	ATTAAA	-20	NA	162859406	162888050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_1	chr2	+	1988	12	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	-15	-8	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	106.160567612002	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAAATGGTCTGTCATT	NA	False	NA	11	True	ATTAAA	-23	NA	162859395	162888053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_162859454_162864294_162864420_162865269_162865358_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_32	chr2	+	2059	12	ISM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	5019	11	-70	-11	3prime_fragment	FALSE	canonical	3	288	junction_2	42.4608716330071	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTATAAAATGGTCTGTC	NA	False	NA	8	True	ATTAAA	-20	NA	162864292	162888050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_41	chr2	+	1552	6	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9590	-11	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	144.162963343572	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTATAAAATGGTCTGTC	NA	False	NA	8	True	ATTAAA	-20	NA	162873952	162888050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_162874156_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_8	chr2	+	2206	13	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	-11	-11	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	92.6614207148201	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTATAAAATGGTCTGTC	NA	False	NA	8	True	ATTAAA	-20	NA	162859427	162888050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_162859577_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017861.12_8	chr2	+	2698	14	FSM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	-61	1014	-61	975	multi-exon	FALSE	canonical	3	2736	junction_8	179.963737307165	5426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	162896545	162925594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_162896769_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
ENSMUSG00000017861.12_9	chr2	+	2275	13	NIC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-61	975	combination_of_known_splicesites	FALSE	canonical	3	127	junction_7	831.247339177028	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	162896545	162925594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_162896769_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
ENSMUSG00000017868.17_0	chr2	+	1622	5	ISM	ENSMUSG00000017868.17	ENSMUST00000018012.14	2693	14	11876	1	1094	0	3prime_fragment	FALSE	canonical	3	12	junction_3	4.54835134966506	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTACTGGGTATGGTT	NA	False	NA	13	True	ATTAAA	-14	NA	162841125	162856046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_162841189_162845191_162845288_162846066_162846223_162848713_162848804_162854829
ENSMUSG00000017868.17_3	chr2	+	4123	4	NIC	ENSMUSG00000017868.17	novel	2693	14	NA	NA	1079	-5	intron_retention	FALSE	canonical	3	14	junction_3	4.18993502999218	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTATTTGTTACTGGGTA	NA	False	NA	8	True	ATTAAA	-9	NA	162841110	162856041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_162841189_162845191_162845288_162846066_162848804_162854829
ENSMUSG00000017897.19_1	chr2	+	2446	16	FSM	ENSMUSG00000017897.19	ENSMUST00000088132.13	2447	16	1	0	1	0	multi-exon	FALSE	canonical	0	0	junction_1	2.44040069569642	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTACTGGCTTCAGTG	NA	False	NA	91	True	AATAAA	-12	NA	165436952	165613639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_165437185_165506705_165506807_165524756_165524803_165527468_165527612_165529538_165529656_165555424_165555493_165557870_165558049_165566593_165566737_165573472_165573557_165596360_165596451_165603823_165603883_165605616_165605778_165608134_165608250_165608956_165609079_165611144_165611246_165612953
ENSMUSG00000017929.14_0	chr2	-	4203	9	FSM	ENSMUSG00000017929.14	ENSMUST00000109221.9	4210	9	-3	10	-3	-10	multi-exon	FALSE	canonical	3	218	junction_3	15.1244834622542	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAACCAAACCTTGGTAGT	NA	False	NA	-11	True	AGTAAA	-13	NA	167191106	167140373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_167143404_167143929_167144032_167146915_167147039_167147579_167147768_167148510_167148628_167149463_167149589_167151142_167151257_167155006_167155142_167190837
ENSMUSG00000017929.14_1	chr2	-	2282	1	ISM	ENSMUSG00000017929.14	ENSMUST00000109221.9	4210	9	48448	10	4963	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAACCAAACCTTGGTAGT	NA	False	NA	-11	True	AGTAAA	-13	NA	167142655	167140373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_167140400_167142700
ENSMUSG00000017929.14_3	chr2	-	3402	4	ISM	ENSMUSG00000017929.14	ENSMUST00000109221.9	4210	9	43380	7	-105	-7	3prime_fragment	FALSE	canonical	3	218	junction_3	18.5711843695788	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAACCTTGGTAGTCGT	NA	False	NA	-8	True	AGTAAA	-16	NA	167147723	167140370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_167143404_167143929_167144032_167146915_167147039_167147579
ENSMUSG00000017943.16_1	chr2	+	2058	7	FSM	ENSMUSG00000017943.16	ENSMUST00000109420.10	2475	7	45	372	-12	-23	multi-exon	FALSE	canonical	0	0	junction_1	1.49071198499986	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGATTGCTTTTCATTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	163280440	163296872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_163280646_163287953_163288147_163289418_163289593_163292485_163292584_163293420_163293536_163295503_163296149_163296244
ENSMUSG00000017950.17_1	chr2	+	3762	10	NIC	ENSMUSG00000017950.17	novel	431	3	NA	NA	26	-516	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1.06574033851394	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGAGGATGCTATGTTGC	NA	False	NA	NA	False	AATAAA	-25	NA	163348753	163414309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_163348908_163393496_163393672_163394479_163394575_163400104_163400212_163400874_163401031_163404438_163404527_163406073_163406230_163408040_163408278_163410806_163410960_163411868
ENSMUSG00000017969.14_0	chr2	-	1100	6	ISM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	19254	289	-12934	-289	3prime_fragment	FALSE	canonical	3	46	junction_5	14.8404851672713	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTTGCTTCCAAATCGG	NA	False	NA	-33	True	AATAAA	-20	NA	167063270	167045115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128
ENSMUSG00000017969.14_1	chr2	-	1808	10	FSM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	10	289	-5	-289	multi-exon	FALSE	canonical	3	9	junction_8	29.1890390386528	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTTGCTTCCAAATCGG	5257	False	NA	-33	True	AATAAA	-20	NA	167082514	167045115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128_167063281_167065904_167066049_167067195_167067375_167069381_167069506_167082263
ENSMUSG00000017978.19_0	chr6	-	4781	28	FSM	ENSMUSG00000017978.19	ENSMUST00000115361.9	4571	28	-213	3	-16	1	multi-exon	FALSE	canonical	0	0	junction_3	1.30945700219731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCAACCTCTATGTTCAT	100	False	NA	NA	False	AATAAA	-14	NA	23839436	23262840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_23263716_23269244_23269350_23287662_23287771_23302292_23302326_23302429_23302514_23314131_23314207_23320931_23320947_23321704_23321853_23323278_23323435_23329018_23329161_23344205_23344363_23355822_23355927_23382879_23383004_23385465_23385530_23390383_23390486_23410740_23410929_23412946_23413084_23427162_23427364_23429108_23429218_23443970_23444038_23496756_23496897_23528050_23528163_23583340_23583463_23587375_23587613_23599428_23599510_23626491_23626825_23688845_23688960_23838788
ENSMUSG00000017999.17_0	chr2	+	2592	21	FSM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	107	15	-10	-15	multi-exon	FALSE	canonical	3	666	junction_12	71.8993045863449	1224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGACCTTCTTGAACAAGC	NA	False	NA	NA	False	NA	NA	NA	166857219	166876852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
ENSMUSG00000017999.17_13	chr2	+	2156	8	FSM	ENSMUSG00000017999.17	ENSMUST00000150571.2	2151	8	-14	9	-14	-9	multi-exon	FALSE	canonical	3	722	junction_7	28.1497453499193	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAATCCATAGTATT	NA	False	NA	NA	False	NA	NA	NA	166857215	166867724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303
ENSMUSG00000018001.19_0	chr5	+	3683	13	FSM	ENSMUSG00000018001.19	ENSMUST00000116456.10	3738	13	45	10	-9	-10	multi-exon	FALSE	canonical	3	61	junction_12	7.06468132488807	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACCAAAACTGCCTAAGA	NA	False	NA	-5	True	AATAAA	-12	NA	143608246	143695995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143608429_143670150_143670234_143672227_143672293_143672732_143672800_143678302_143678422_143683470_143683552_143687073_143687187_143687351_143687501_143688568_143688681_143692838_143692916_143692993_143693066_143693149_143693305_143693587
ENSMUSG00000018001.19_9	chr5	+	1922	1	ISM	ENSMUSG00000018001.19	ENSMUST00000116456.10	3738	13	85872	10	57078	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACCAAAACTGCCTAAGA	NA	False	NA	-5	True	AATAAA	-12	NA	143694073	143695995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_143694100_143696000
ENSMUSG00000018012.12_0	chr11	+	919	5	FSM	ENSMUSG00000018012.12	ENSMUST00000134322.2	717	5	202	-404	202	0	multi-exon	FALSE	canonical	3	54	junction_2	3.80788655293195	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCGCTGTCTGCCC	4544	False	NA	14	True	AATAAA	-14	NA	120613041	120614795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
ENSMUSG00000018012.12_1	chr11	+	1079	6	FSM	ENSMUSG00000018012.12	ENSMUST00000142229.2	589	6	-127	-363	-24	0	multi-exon	FALSE	canonical	1	1	junction_1	23.4486673395313	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCGCTGTCTGCCC	3774	False	NA	14	True	AATAAA	-14	NA	120612271	120614795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120612447_120613056_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
ENSMUSG00000018012.12_2	chr11	+	1080	6	FSM	ENSMUSG00000018012.12	ENSMUST00000018156.12	1076	6	-4	0	-4	0	multi-exon	FALSE	canonical	3	29	junction_1	12.4739729036101	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCGCTGTCTGCCC	3794	False	NA	14	True	AATAAA	-14	NA	120612291	120614795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120612468_120613056_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
ENSMUSG00000018012.12_5	chr11	+	484	1	ISM	ENSMUSG00000018012.12	ENSMUST00000018156.12	1076	6	2016	0	1472	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCGCTGTCTGCCC	5814	False	NA	14	True	AATAAA	-14	NA	120614311	120614795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120614300_120614800
ENSMUSG00000018040.10_0	chr15	-	1886	7	FSM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	58	2419	8	-4	multi-exon	FALSE	canonical	3	832	junction_3	73.7437379639037	1022	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAATGCTGTCTCTCCTG	NA	False	NA	NA	False	AATAAA	-9	NA	83006944	83000052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ENSMUSG00000018042.19_0	chr15	-	2024	9	FSM	ENSMUSG00000018042.19	ENSMUST00000018186.16	2422	9	395	3	395	-3	multi-exon	FALSE	canonical	3	1513	junction_1	61.7454451761423	1642	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCCAGCGTTTCTCT	NA	False	NA	-3	True	AGTAAA	-15	NA	83056398	83037697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
ENSMUSG00000018068.14_0	chr11	-	5984	26	NIC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	4	-9	intron_retention	FALSE	canonical	3	33	junction_24	49.1211726244397	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGAACTGTAGCTTTT	NA	False	NA	NA	False	TATAAA	-13	NA	86148387	86101515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86147247_86147324_86148029
ENSMUSG00000018068.14_12	chr11	-	5896	27	NIC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	3	-9	combination_of_known_junctions	FALSE	canonical	3	33	junction_24	54.4039243276486	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGAACTGTAGCTTTT	NA	False	NA	NA	False	TATAAA	-13	NA	86148388	86101515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86147247_86147324_86148029_86148242_86148330
ENSMUSG00000018068.14_2	chr11	-	5887	25	FSM	ENSMUSG00000018068.14	ENSMUST00000018212.13	5906	25	10	9	1	-9	multi-exon	FALSE	canonical	3	118	junction_24	28.5226213829577	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGAACTGTAGCTTTT	NA	False	NA	NA	False	TATAAA	-13	NA	86148366	86101515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86148029
ENSMUSG00000018068.14_20	chr11	-	5609	25	NIC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	2	-9	combination_of_known_splicesites	FALSE	canonical	2	6	junction_24	44.6783061638047	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGAACTGTAGCTTTT	NA	False	NA	NA	False	TATAAA	-13	NA	86148389	86101515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86148330
ENSMUSG00000018068.14_5	chr11	-	5819	26	NIC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	4	-9	combination_of_known_junctions	FALSE	canonical	3	50	junction_25	39.3049615188719	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGAACTGTAGCTTTT	NA	False	NA	NA	False	TATAAA	-13	NA	86148387	86101515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86148029_86148242_86148330
ENSMUSG00000018068.14_7	chr11	-	6766	24	FSM	ENSMUSG00000018068.14	ENSMUST00000108039.8	4369	24	-999	-1398	-4	-9	multi-exon	FALSE	canonical	3	154	junction_20	24.6346460193577	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGAACTGTAGCTTTT	NA	False	NA	NA	False	TATAAA	-13	NA	86148371	86101515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848
ENSMUSG00000018068.14_8	chr11	-	1248	1	NIC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	15880	-18	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	86104179	86102931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_86102900_86104200
ENSMUSG00000018076.13_12	chr5	+	7519	22	ISM	ENSMUSG00000018076.13	ENSMUST00000100816.8	9296	31	167867	7	-18733	-7	3prime_fragment	FALSE	canonical	3	20	junction_3	17.8151251695647	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAAACCTCGAGTGGCTC	NA	False	NA	23	True	AATAAA	-11	NA	118866650	118903496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118866945_118867834_118868061_118868976_118869083_118869392_118869518_118872023_118872124_118876379_118876601_118876859_118877066_118879890_118880841_118883073_118883254_118883706_118883931_118885383_118885577_118886628_118887047_118887673_118887894_118888910_118889100_118889595_118889820_118889931_118890075_118892327_118892487_118893603_118893781_118895141_118895300_118897166_118897329_118899350_118899464_118900765
ENSMUSG00000018076.13_19	chr5	+	5739	15	ISM	ENSMUSG00000018076.13	ENSMUST00000100816.8	9296	31	181609	7	-4991	-7	3prime_fragment	FALSE	canonical	3	34	junction_1	13.0464241719128	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAAACCTCGAGTGGCTC	NA	False	NA	23	True	AATAAA	-11	NA	118880392	118903496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118880841_118883073_118883254_118883706_118883931_118885383_118885577_118886628_118887047_118887673_118887894_118888910_118889100_118889595_118889820_118889931_118890075_118892327_118892487_118893603_118893781_118895141_118895300_118897166_118897329_118899350_118899464_118900765
ENSMUSG00000018076.13_2	chr5	+	9629	31	FSM	ENSMUSG00000018076.13	ENSMUST00000100816.8	9296	31	-343	10	-303	-10	multi-exon	FALSE	canonical	3	9	junction_4	21.22063984793	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACTGAAACCTCGAGTGG	NA	False	NA	20	True	AATAAA	-8	NA	118698440	118903493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_118698923_118731397_118731636_118809077_118809163_118818952_118819037_118856547_118856694_118859439_118859635_118859829_118860004_118862052_118862219_118864325_118864431_118866212_118866945_118867834_118868061_118868976_118869083_118869392_118869518_118872023_118872124_118876379_118876601_118876859_118877066_118879890_118880841_118883073_118883254_118883706_118883931_118885383_118885577_118886628_118887047_118887673_118887894_118888910_118889100_118889595_118889820_118889931_118890075_118892327_118892487_118893603_118893781_118895141_118895300_118897166_118897329_118899350_118899464_118900765
ENSMUSG00000018076.13_21	chr5	+	4987	13	ISM	ENSMUSG00000018076.13	ENSMUST00000100816.8	9296	31	185047	7	-1553	-7	3prime_fragment	FALSE	canonical	3	47	junction_4	10.773875295774	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAAACCTCGAGTGGCTC	NA	False	NA	23	True	AATAAA	-11	NA	118883830	118903496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118883931_118885383_118885577_118886628_118887047_118887673_118887894_118888910_118889100_118889595_118889820_118889931_118890075_118892327_118892487_118893603_118893781_118895141_118895300_118897166_118897329_118899350_118899464_118900765
ENSMUSG00000018076.13_27	chr5	+	4377	11	ISM	ENSMUSG00000018076.13	ENSMUST00000100816.8	9296	31	188166	3	-1502	-3	3prime_fragment	FALSE	canonical	3	47	junction_2	10.3058235963944	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTCGAGTGGCTCTTTT	NA	False	NA	27	True	AATAAA	-15	NA	118886949	118903500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118887047_118887673_118887894_118888910_118889100_118889595_118889820_118889931_118890075_118892327_118892487_118893603_118893781_118895141_118895300_118897166_118897329_118899350_118899464_118900765
ENSMUSG00000018076.13_33	chr5	+	3748	8	ISM	ENSMUSG00000018076.13	ENSMUST00000202538.4	4389	11	4334	-1518	1266	-4	3prime_fragment	FALSE	canonical	3	57	junction_1	8.20900451346208	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACCTCGAGTGGCTCTTT	NA	False	NA	26	True	AATAAA	-14	NA	118889717	118903499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118889820_118889931_118890075_118892327_118892487_118893603_118893781_118895141_118895300_118897166_118897329_118899350_118899464_118900765
ENSMUSG00000018076.13_34	chr5	+	3434	6	ISM	ENSMUSG00000018076.13	ENSMUST00000202538.4	4389	11	7006	-1511	3938	-11	3prime_fragment	FALSE	canonical	3	60	junction_2	7.31026675299883	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTACTGAAACCTCGAGTG	NA	False	NA	19	True	AATAAA	-7	NA	118892389	118903492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118892487_118893603_118893781_118895141_118895300_118897166_118897329_118899350_118899464_118900765
ENSMUSG00000018076.13_35	chr5	+	3241	5	ISM	ENSMUSG00000018076.13	ENSMUST00000202538.4	4389	11	8322	-1517	5254	-5	3prime_fragment	FALSE	canonical	3	60	junction_1	8.16624148553054	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACCTCGAGTGGCTCTT	NA	False	NA	25	True	AATAAA	-13	NA	118893705	118903498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118893781_118895141_118895300_118897166_118897329_118899350_118899464_118900765
ENSMUSG00000018076.13_36	chr5	+	2543	4	ISM	ENSMUSG00000018076.13	ENSMUST00000202538.4	4389	11	9785	-921	6717	-601	3prime_fragment	FALSE	canonical	3	73	junction_2	4.71404520791032	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAATCTTATTATGTAC	NA	False	NA	NA	False	AATAAA	-18	NA	118895168	118902902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118895300_118897166_118897329_118899350_118899464_118900765
ENSMUSG00000018076.13_39	chr5	+	1529	1	ISM	ENSMUSG00000018076.13	ENSMUST00000100816.8	9296	31	203186	5	13518	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACCTCGAGTGGCTCTT	NA	False	NA	25	True	AATAAA	-13	NA	118901969	118903498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118902000_118903500
ENSMUSG00000018102.6_0	chr13	+	720	2	FSM	ENSMUSG00000018102.6	ENSMUST00000018246.6	1156	2	3	433	3	-433	multi-exon	FALSE	canonical	3	53	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCAAAAAAAATGCGTCA	186	False	NA	NA	False	NA	NA	NA	23868184	23876458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_23868605_23876158
ENSMUSG00000018126.16_0	chr15	-	1149	6	ISM	ENSMUSG00000018126.16	ENSMUST00000169462.8	2276	13	23943	-5	-202	4	3prime_fragment	FALSE	canonical	1	1	junction_1	0.489897948556636	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAGGAGCCTGATTTGG	NA	False	NA	NA	False	NA	NA	NA	79145699	79142390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79142853_79143003_79143048_79143387_79143596_79143851_79143975_79145273_79145488_79145601
ENSMUSG00000018143.11_0	chr5	+	2837	3	FSM	ENSMUSG00000018143.11	ENSMUST00000018287.10	2849	3	8	4	8	-4	multi-exon	FALSE	canonical	3	22	junction_1	1.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTCTGGTGTCTGGATG	NA	False	NA	12	True	AATAAA	-17	NA	139777275	139788404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_139777468_139784893_139784974_139785839
ENSMUSG00000018143.11_2	chr5	+	2719	4	NNC	ENSMUSG00000018143.11	novel	2849	3	NA	NA	-1	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	11.1455023315337	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTCTGGTGTCTGGATG	NA	False	NA	12	True	AATAAA	-17	NA	139777287	139788404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_139777468_139784893_139784974_139785839_139787746_139787851
ENSMUSG00000018143.11_7	chr5	+	2298	1	ISM	ENSMUSG00000018143.11	ENSMUST00000018287.10	2849	3	8839	4	2838	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTCTGGTGTCTGGATG	NA	False	NA	12	True	AATAAA	-17	NA	139786106	139788404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_139786100_139788400
ENSMUSG00000018160.16_0	chr11	-	3293	1	NIC	ENSMUSG00000018160.16	novel	2627	18	NA	NA	5567	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAAATGTGCCTCTGT	7160	False	NA	NA	False	AATAAA	-33	NA	98046281	98042988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_98043000_98046300
ENSMUSG00000018160.16_1	chr11	-	2701	17	FSM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	14	5309	-3	289	multi-exon	FALSE	canonical	3	176	junction_3	32.1266414950271	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATCCAGCTGACCTTAT	NA	False	NA	-13	True	AATGAA	-10	NA	98084105	98048289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUSG00000018160.16_17	chr11	-	2506	18	NIC	ENSMUSG00000018160.16	novel	8024	17	NA	NA	-2	289	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	37.2323667653306	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATCCAGCTGACCTTAT	NA	False	NA	-13	True	AATGAA	-10	NA	98084104	98048289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_98048961_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUSG00000018160.16_2	chr11	-	2638	18	FSM	ENSMUSG00000018160.16	ENSMUST00000092735.12	2627	18	-20	9	-4	-8	multi-exon	FALSE	canonical	3	35	junction_1	53.6447367918524	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAAATGTGCCTCTGT	NA	False	NA	NA	False	AATAAA	-33	NA	98084106	98042988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_98043790_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUSG00000018160.16_3	chr11	-	2802	18	NIC	ENSMUSG00000018160.16	novel	2627	18	NA	NA	-6	-8	combination_of_known_junctions	TRUE	canonical	3	22	junction_1	56.1624559050546	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAAATGTGCCTCTGT	NA	False	NA	NA	False	AATAAA	-33	NA	98084108	98042988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_98043952_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUSG00000018160.16_33	chr11	-	2138	16	ISM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	15	8338	-2	-2740	5prime_fragment	FALSE	canonical	3	176	junction_2	32.5798847279865	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTCACTGTTGCCTCC	NA	False	NA	NA	False	AATAAA	-15	NA	98084104	98051318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUSG00000018160.16_37	chr11	-	1371	10	FSM	ENSMUSG00000018160.16	ENSMUST00000129557.2	1372	10	0	1	0	-1	multi-exon	FALSE	canonical	3	39	junction_1	68.4675285747617	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTAGGACTTTGCATATT	NA	False	NA	NA	False	AATAAA	-14	NA	98084102	98060737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_98061267_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUSG00000018166.9_0	chr10	-	1782	1	ISM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	20341	7	20341	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTGTTTTTGTGGAT	5368	False	NA	-7	True	AATAAA	-14	NA	128405180	128403398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128403400_128405200
ENSMUSG00000018166.9_1	chr10	-	6019	28	FSM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	-10	7	-10	-7	multi-exon	FALSE	canonical	0	0	junction_1	16.414470513838	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTGTTTTTGTGGAT	NA	False	NA	-7	True	AATAAA	-14	NA	128425531	128403398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407228_128407314_128407413_128407513_128407661_128407997_128408074_128408302_128408459_128408627_128408814_128409043_128409143_128409280_128409401_128410207_128410344_128411850_128411905_128412729_128412885_128413072_128413164_128413968_128414102_128414262_128414469_128414870_128414962_128415364_128415439_128417632_128417754_128417858_128417973_128418985_128419128_128419234_128419354_128419505_128419572_128420179_128420306_128420880_128421068_128422008_128422161_128425288
ENSMUSG00000018166.9_11	chr10	-	4454	17	ISM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	11183	7	11183	-7	3prime_fragment	FALSE	canonical	0	0	junction_1	17.1755640373177	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTGTTTTTGTGGAT	NA	False	NA	-7	True	AATAAA	-14	NA	128414338	128403398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407228_128407314_128407413_128407513_128407661_128407997_128408074_128408302_128408459_128408627_128408814_128409043_128409143_128409280_128409401_128410207_128410344_128411850_128411905_128412729_128412885_128413072_128413164_128413968_128414102_128414262
ENSMUSG00000018166.9_13	chr10	-	5393	24	ISM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	5868	7	5868	-7	3prime_fragment	FALSE	canonical	0	0	junction_1	15.9862890213135	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTGTTTTTGTGGAT	NA	False	NA	-7	True	AATAAA	-14	NA	128419653	128403398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407228_128407314_128407413_128407513_128407661_128407997_128408074_128408302_128408459_128408627_128408814_128409043_128409143_128409280_128409401_128410207_128410344_128411850_128411905_128412729_128412885_128413072_128413164_128413968_128414102_128414262_128414469_128414870_128414962_128415364_128415439_128417632_128417754_128417858_128417973_128418985_128419128_128419234_128419354_128419505
ENSMUSG00000018166.9_15	chr10	-	2784	4	ISM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	18437	7	18437	-7	3prime_fragment	FALSE	canonical	0	0	junction_1	35.052341814302	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTGTTTTTGTGGAT	3464	False	NA	-7	True	AATAAA	-14	NA	128407084	128403398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038
ENSMUSG00000018166.9_16	chr10	-	3314	8	ISM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	17154	6	17154	-6	3prime_fragment	FALSE	canonical	0	0	junction_1	23.3971915286551	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTGTTTTTGTGGATT	2181	False	NA	-6	True	AATAAA	-15	NA	128408367	128403397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407228_128407314_128407413_128407513_128407661_128407997_128408074_128408302
ENSMUSG00000018166.9_21	chr10	-	3656	10	ISM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	16412	7	16412	-7	3prime_fragment	FALSE	canonical	0	0	junction_1	20.8439232344218	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTGTTTTTGTGGAT	1439	False	NA	-7	True	AATAAA	-14	NA	128409109	128403398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407228_128407314_128407413_128407513_128407661_128407997_128408074_128408302_128408459_128408627_128408814_128409043
ENSMUSG00000018166.9_3	chr10	-	5427	25	ISM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	5228	5	5228	-5	3prime_fragment	FALSE	canonical	0	0	junction_1	15.7160127117394	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGTTTTTGTGGATTC	NA	False	NA	-5	True	AATAAA	-16	NA	128420293	128403396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407228_128407314_128407413_128407513_128407661_128407997_128408074_128408302_128408459_128408627_128408814_128409043_128409143_128409280_128409401_128410207_128410344_128411850_128411905_128412729_128412885_128413072_128413164_128413968_128414102_128414262_128414469_128414870_128414962_128415364_128415439_128417632_128417754_128417858_128417973_128418985_128419128_128419234_128419354_128419505_128419572_128420179
ENSMUSG00000018167.11_0	chr11	+	2002	15	FSM	ENSMUSG00000018167.11	ENSMUST00000018311.5	2070	15	58	10	-4	-10	multi-exon	FALSE	canonical	3	120	junction_11	11.573412528335	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGAAATAAAAAATAAAAAT	933	False	NA	-12	True	ATTAAA	-4	NA	98249251	98271915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98249335_98262895_98263169_98265905_98265984_98266301_98266380_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98269825_98270798_98270893_98271283
ENSMUSG00000018167.11_1	chr11	+	2140	15	NIC	ENSMUSG00000018167.11	novel	2070	15	NA	NA	-4	-10	combination_of_known_junctions	TRUE	canonical	3	5	junction_2	37.1593370033779	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGAAATAAAAAATAAAAAT	871	False	NA	-12	True	ATTAAA	-4	NA	98249189	98271915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_98249335_98262895_98263169_98265829_98265984_98266301_98266380_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98269825_98270798_98270893_98271283
ENSMUSG00000018167.11_3	chr11	+	2029	15	NIC	ENSMUSG00000018167.11	novel	2170	16	NA	NA	21	-7	combination_of_known_junctions	FALSE	canonical	3	18	junction_4	34.185344156554	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAATAAAAATGCA	896	False	NA	-9	True	ATTAAA	-7	NA	98249214	98271918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_98249335_98262895_98263169_98265905_98265984_98266301_98266367_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98269825_98270798_98270893_98271283
ENSMUSG00000018167.11_5	chr11	+	2964	14	NIC	ENSMUSG00000018167.11	novel	2070	15	NA	NA	1	-16	intron_retention	FALSE	canonical	3	120	junction_11	11.8071285257538	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACATGAAATAAAAAAT	939	False	NA	-18	True	NA	NA	NA	98249257	98271909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_98249335_98262895_98263169_98265905_98265984_98266301_98266380_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98270893_98271283
ENSMUSG00000018168.9_2	chr11	-	3180	4	ISM	ENSMUSG00000018168.9	ENSMUST00000103141.4	3658	8	56781	7	1	-7	3prime_fragment	FALSE	canonical	0	0	junction_2	0.942809041582063	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACACAAATAGCTTAGC	4959	False	NA	NA	False	ATTAAA	-13	NA	98379845	98355734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_98358513_98367752_98367870_98376399_98376517_98379677
ENSMUSG00000018169.13_1	chr15	-	1867	8	FSM	ENSMUSG00000018169.13	ENSMUST00000018313.6	1865	8	-4	2	-4	-2	multi-exon	FALSE	canonical	3	144	junction_5	11.4749060731561	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTGTCCAGCTTCCTG	NA	False	NA	-6	True	ATTAAA	-15	NA	78657679	78640083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_78640845_78641496_78641583_78643392_78643559_78645005_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
ENSMUSG00000018169.13_8	chr15	-	3310	7	NIC	ENSMUSG00000018169.13	novel	1865	8	NA	NA	0	-2	intron_retention	FALSE	canonical	3	144	junction_4	12.3017613914973	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTGTCCAGCTTCCTG	NA	False	NA	-6	True	ATTAAA	-15	NA	78657675	78640083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_78640845_78641496_78641583_78643392_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
ENSMUSG00000018171.10_0	chr11	-	1942	12	FSM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	13	832	-2	233	multi-exon	FALSE	canonical	3	615	junction_5	55.9317766244166	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATTGTGTCCGTTTTCTT	9885	False	NA	-4	True	TATAAA	-19	NA	86574649	86475522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479_86555616_86556602_86556705_86574565
ENSMUSG00000018171.10_1	chr11	-	1179	6	NNC	ENSMUSG00000018171.10	novel	2787	12	NA	NA	-19012	234	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_5	277.055517902098	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTGTCCGTTTTCTTT	NA	False	NA	-3	True	TATAAA	-20	NA	86512133	86475521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86512073
ENSMUSG00000018189.13_3	chr1	+	1295	11	FSM	ENSMUSG00000018189.13	ENSMUST00000189936.7	1696	11	24	377	-9	-13	multi-exon	FALSE	canonical	3	615	junction_8	216.947090323885	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGCTGGCTAAACTC	NA	False	NA	12	True	NA	NA	NA	143653033	143682666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143682421
ENSMUSG00000018189.13_4	chr1	+	1289	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	18	538	-6	-13	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGCTGGCTAAACTC	NA	False	NA	12	True	NA	NA	NA	143653036	143682666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
ENSMUSG00000018189.13_5	chr1	+	1456	12	NIC	ENSMUSG00000018189.13	novel	1696	11	NA	NA	4	-13	combination_of_known_junctions	FALSE	canonical	3	124	junction_10	455.061706831934	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGCTGGCTAAACTC	NA	False	NA	12	True	NA	NA	NA	143653022	143682666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143678665_143678816_143682421
ENSMUSG00000018189.13_7	chr1	+	1442	12	NIC	ENSMUSG00000018189.13	novel	1845	11	NA	NA	-9	-13	combination_of_known_junctions	FALSE	canonical	3	124	junction_10	458.199927492049	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGCTGGCTAAACTC	NA	False	NA	12	True	NA	NA	NA	143653033	143682666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143678665_143678816_143682421
ENSMUSG00000018196.19_0	chr1	+	608	4	FSM	ENSMUSG00000018196.19	ENSMUST00000111957.10	580	4	-29	1	20	0	multi-exon	FALSE	canonical	3	64	junction_1	245.711664806989	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCCGATTGGCCAGTTT	NA	False	NA	30	True	AATAAA	-17	NA	143615323	143622513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_143615423_143617385_143617450_143620784_143620962_143622245
ENSMUSG00000018196.19_12	chr1	+	142	1	FSM	ENSMUSG00000018196.19	ENSMUST00000190211.2	2250	1	346	1762	346	797	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAATGGAAACTTGCT	NA	False	NA	NA	False	NA	NA	NA	143619498	143619640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_143619500_143619600
ENSMUSG00000018196.19_2	chr1	+	662	4	FSM	ENSMUSG00000018196.19	ENSMUST00000185362.7	3337	4	49	2626	-4	0	multi-exon	FALSE	canonical	3	459	junction_1	59.84981202978	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCCGATTGGCCAGTTT	NA	False	NA	30	True	AATAAA	-17	NA	143615343	143622513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_143615497_143617385_143617450_143620784_143620962_143622245
ENSMUSG00000018196.19_7	chr1	+	3996	3	NIC	ENSMUSG00000018196.19	novel	1199	4	NA	NA	-4	0	intron_retention	FALSE	canonical	3	459	junction_1	67.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCCCGATTGGCCAGTT	NA	False	NA	29	True	AATAAA	-16	NA	143615343	143622512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_143615497_143617385_143620962_143622245
ENSMUSG00000018199.10_1	chr1	-	3595	1	ISM	ENSMUSG00000018199.10	ENSMUST00000159879.2	8738	9	22678	6	16636	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATAACTGTCTTTTAA	NA	False	NA	-7	True	AATAAA	-11	NA	143630128	143626533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_143626500_143630100
ENSMUSG00000018199.10_5	chr1	-	3873	9	FSM	ENSMUSG00000018199.10	ENSMUST00000159879.2	8738	9	48	4817	48	241	multi-exon	FALSE	canonical	3	15	junction_2	6.34428877022476	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACCATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	143652758	143631344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_143633633_143635680_143635828_143636090_143636205_143637007_143637125_143641170_143641309_143641511_143641659_143642327_143642549_143646163_143646765_143652658
ENSMUSG00000018199.10_7	chr1	-	705	1	ISM	ENSMUSG00000018199.10	ENSMUST00000159879.2	8738	9	20762	4812	14720	246	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACCATTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	143632044	143631339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_143631300_143632000
ENSMUSG00000018199.10_9	chr1	-	2700	8	ISM	ENSMUSG00000018199.10	ENSMUST00000159879.2	8738	9	6059	5873	17	-815	3prime_fragment	FALSE	canonical	3	15	junction_2	3.74165738677394	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTAAAATACATTCTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	143646747	143632400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_143633633_143635680_143635828_143636090_143636205_143637007_143637125_143641170_143641309_143641511_143641659_143642327_143642549_143646163
ENSMUSG00000018209.16_2	chr2	+	5218	11	FSM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	11	3	11	-3	multi-exon	FALSE	canonical	3	214	junction_9	12.953763931769	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCTGTCCCCTTTCTTC	NA	False	NA	15	True	AATAAA	-15	NA	163916068	163997441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888_163960047_163993592
ENSMUSG00000018209.16_34	chr2	+	2607	1	ISM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	78777	3	42714	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCTGTCCCCTTTCTTC	NA	False	NA	15	True	AATAAA	-15	NA	163994834	163997441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_163994800_163997400
ENSMUSG00000018239.10_1	chr11	+	1190	4	FSM	ENSMUSG00000018239.10	ENSMUST00000018383.10	1267	4	13	64	13	-64	multi-exon	FALSE	canonical	3	238	junction_3	30.2691628926573	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGAAAATTCTGATTTTT	NA	False	NA	29	True	AATAAA	-23	NA	53215518	53224064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_53215569_53218095_53218255_53221513_53221559_53223128
ENSMUSG00000018239.10_2	chr11	+	2763	3	ISM	ENSMUSG00000018239.10	ENSMUST00000018383.10	1267	4	13	61	13	-61	intron_retention	FALSE	canonical	3	244	junction_1	30.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAATTCTGATTTTTCTA	NA	False	NA	32	True	AATAAA	-26	NA	53215518	53224067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_53215569_53218095_53218255_53221513
ENSMUSG00000018239.10_3	chr11	+	1899	4	NIC	ENSMUSG00000018239.10	novel	1267	4	NA	NA	13	-9	intron_retention	FALSE	canonical	2	6	junction_3	128.998708003866	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACATTGGAATGATGTAA	NA	False	NA	5	True	TATAAA	-18	NA	53215518	53224119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_53215569_53218095_53218255_53221513_53221559_53222474
ENSMUSG00000018286.7_0	chr11	+	804	6	FSM	ENSMUSG00000018286.7	ENSMUST00000018430.7	798	6	-9	3	-9	-3	multi-exon	FALSE	canonical	3	5742	junction_5	304.149305440601	1872	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGACGTTTCTGTGTGA	NA	False	NA	20	True	AATAAA	-10	NA	70416202	70418472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70417500_70418004_70418150_70418262
ENSMUSG00000018287.13_0	chr11	-	1014	7	FSM	ENSMUSG00000018287.13	ENSMUST00000018431.13	1159	7	126	19	0	-19	multi-exon	FALSE	canonical	3	730	junction_3	39.5179284207392	361	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTCTGACTTGTACCTG	NA	False	NA	-28	True	AATAAA	-14	NA	70560116	70554615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022
ENSMUSG00000018293.5_0	chr11	-	848	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	11	2	11	-2	multi-exon	FALSE	canonical	3	9692	junction_2	172	3142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGACCTGTGTTGGTT	NA	False	NA	NA	False	AATAAA	-14	NA	70545459	70542677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70543048_70543612_70543806_70545174
ENSMUSG00000018293.5_2	chr11	-	2210	2	ISM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	18	2	-5	-2	intron_retention	FALSE	canonical	3	10036	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGACCTGTGTTGGTT	NA	False	NA	NA	False	AATAAA	-14	NA	70545452	70542677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_70543048_70543612
ENSMUSG00000018322.11_0	chr2	-	1852	7	FSM	ENSMUSG00000018322.11	ENSMUST00000109384.10	1923	7	68	3	1	-3	multi-exon	FALSE	canonical	3	532	junction_3	35.0606617165164	804	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGCTGGCTCTGACGCA	5949	False	NA	-8	True	ATTAAA	-13	NA	163913021	163895462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
ENSMUSG00000018326.10_0	chr2	+	2794	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	214	5	214	-5	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	1050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTAGTTGCCTGTGGATTG	NA	False	NA	16	True	AATAAA	-11	NA	163837093	163860503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
ENSMUSG00000018326.10_13	chr2	+	1430	1	ISM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	22197	2	21654	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGCCTGTGGATTGATG	5291	False	NA	19	True	AATAAA	-14	NA	163859076	163860506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_163859100_163860500
ENSMUSG00000018334.19_1	chr11	-	5548	18	NIC	ENSMUSG00000018334.19	novel	5495	19	NA	NA	-64	-5	combination_of_known_splicesites	TRUE	canonical	0	0	junction_14	9.7916001003897	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATCTGGAGACTCCTG	NA	False	NA	-11	True	AATAAA	-8	NA	79037297	78904271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78907090_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854_78919910_78924043_78924210_78927320_78927428_78927512_78927575_78928977_78929062_78931702_78931764_78935670_78936095_78938122_78938271_78965171_78965313_79036880
ENSMUSG00000018334.19_11	chr11	-	672	4	NIC	ENSMUSG00000018334.19	novel	491	3	NA	NA	-366	6	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	11.5181016954473	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGGCTCTTGCTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	78911602	78907855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78908163_78910387_78910522_78911180_78911317_78911507
ENSMUSG00000018334.19_2	chr11	-	5595	19	NIC	ENSMUSG00000018334.19	novel	5495	19	NA	NA	-69	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	11.422443793787	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATCTGGAGACTCCTG	NA	False	NA	-11	True	AATAAA	-8	NA	79037302	78904271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78907090_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854_78919910_78921906_78921949_78924043_78924210_78927320_78927428_78927512_78927575_78928977_78929062_78931702_78931764_78935670_78936095_78938122_78938271_78965171_78965313_79036880
ENSMUSG00000018334.19_4	chr11	-	1649	1	ISM	ENSMUSG00000018334.19	ENSMUST00000018478.11	5495	19	131317	2	5320	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGGAGACTCCTGTTTG	NA	False	NA	-7	True	AATAAA	-12	NA	78905916	78904267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_78904300_78905900
ENSMUSG00000018334.19_5	chr11	-	3035	18	NIC	ENSMUSG00000018334.19	novel	2748	13	NA	NA	-66	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	9.61328377369018	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGAGTGGCTCTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	79037299	78907859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78908163_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854_78919910_78924043_78924210_78927320_78927428_78927512_78927575_78928977_78929062_78931702_78931764_78935670_78936095_78938122_78938271_78965171_78965313_79036880
ENSMUSG00000018334.19_7	chr11	-	5863	16	NIC	ENSMUSG00000018334.19	novel	5495	19	NA	NA	12450	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	11.962162569257	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGGTATCTGGAGACTC	9907	False	NA	-14	True	AATAAA	-5	NA	78936003	78904274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78908163_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854_78919910_78921906_78921949_78924043_78924210_78927320_78927428_78927512_78927575_78928977_78929062_78931702_78931764_78935670
ENSMUSG00000018334.19_9	chr11	-	3077	19	NIC	ENSMUSG00000018334.19	novel	2748	13	NA	NA	-64	4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	11.296372191609	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTGGCTCTTGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	79037297	78907857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78908163_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854_78919910_78921906_78921949_78924043_78924210_78927320_78927428_78927512_78927575_78928977_78929062_78931702_78931764_78935670_78936095_78938122_78938271_78965171_78965313_79036880
ENSMUSG00000018339.13_0	chr11	+	1456	5	FSM	ENSMUSG00000018339.13	ENSMUST00000082430.11	1594	5	134	4	-20	-4	multi-exon	FALSE	canonical	3	86	junction_4	9.98436277385793	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTTCAGCCTACTTGGA	NA	False	NA	5	True	AGTAAA	-12	NA	54793731	54801199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_54793879_54797952_54798107_54799366_54799485_54799865_54799966_54800262
ENSMUSG00000018340.14_0	chr11	-	2451	25	FSM	ENSMUSG00000018340.14	ENSMUST00000102727.3	2471	25	14	6	14	-6	multi-exon	FALSE	canonical	3	220	junction_5	83.6892399827414	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAATGAGTGATGTGTGT	NA	False	NA	-10	True	NA	NA	NA	54924257	54869939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
ENSMUSG00000018340.14_1	chr11	-	2466	26	FSM	ENSMUSG00000018340.14	ENSMUST00000108883.10	2489	26	17	6	-13	-6	multi-exon	FALSE	canonical	3	343	junction_6	73.4786608478952	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAATGAGTGATGTGTGT	NA	False	NA	-10	True	NA	NA	NA	54924254	54869939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
ENSMUSG00000018347.17_0	chr11	+	2225	7	FSM	ENSMUSG00000018347.17	ENSMUST00000071465.9	2270	7	44	1	-25	-1	multi-exon	FALSE	canonical	3	32	junction_5	5.11262055005932	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCCTTGTAGCTGCCT	NA	False	NA	13	True	AATAAA	-19	NA	65698044	65720063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_65698088_65705190_65705678_65706743_65706952_65707314_65707407_65712755_65712841_65713650_65713765_65718867
ENSMUSG00000018347.17_3	chr11	+	2231	7	NNC	ENSMUSG00000018347.17	novel	2270	7	NA	NA	-33	0	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_5	10.077477638554	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCCTTGTAGCTGCCTT	NA	False	NA	14	True	AATAAA	-20	NA	65698036	65720064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_65698088_65705190_65705678_65706743_65706952_65707314_65707407_65712755_65712841_65713653_65713765_65718867
ENSMUSG00000018347.17_7	chr11	+	2742	7	ISM	ENSMUSG00000018347.17	ENSMUST00000018491.8	2302	8	262	1	262	0	3prime_fragment	FALSE	canonical	2	3	junction_1	15.1703292280981	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCCTTGTAGCTGCCTT	NA	False	NA	14	True	AATAAA	-20	NA	65698331	65720064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_65698891_65705190_65705678_65706743_65706952_65707314_65707407_65712755_65712841_65713650_65713765_65718867
ENSMUSG00000018362.15_17	chr11	-	1967	11	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-12	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	976.649599395812	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGACTTGCTGTTTTCT	9745	False	NA	NA	False	AATAAA	-20	NA	106890288	106879461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_106879806_106880149_106880299_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
ENSMUSG00000018362.15_2	chr11	-	1947	11	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-12	-7	combination_of_known_junctions	FALSE	canonical	3	138	junction_10	946.562882221778	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGACTTGCTGTTTTCT	9745	False	NA	NA	False	AATAAA	-20	NA	106890288	106879461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888141_106890184
ENSMUSG00000018362.15_3	chr11	-	1967	11	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-12	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	974.798933113901	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGACTTGCTGTTTTCT	9745	False	NA	NA	False	AATAAA	-20	NA	106890288	106879461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883517_106887334_106887473_106888063_106888162_106890184
ENSMUSG00000018362.15_7	chr11	-	1969	11	FSM	ENSMUSG00000018362.15	ENSMUST00000018506.13	2054	11	78	7	-13	-7	multi-exon	FALSE	canonical	3	2002	junction_5	417.039386629129	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGACTTGCTGTTTTCT	9744	False	NA	NA	False	AATAAA	-20	NA	106890289	106879461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
ENSMUSG00000018362.15_8	chr11	-	2048	10	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-12	-7	intron_retention	FALSE	canonical	3	2432	junction_9	276.995431615401	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGACTTGCTGTTTTCT	9745	False	NA	NA	False	AATAAA	-20	NA	106890288	106879461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
ENSMUSG00000018363.17_0	chr11	-	3280	5	ISM	ENSMUSG00000018363.17	ENSMUST00000103067.10	5290	18	89612	2	-2097	-2	3prime_fragment	FALSE	canonical	3	44	junction_4	3.96074487943871	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAATACTGAGTTTTTA	3338	False	NA	-8	True	AATAAA	-37	NA	106721929	106710893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745
ENSMUSG00000018363.17_1	chr11	-	4562	16	ISM	ENSMUSG00000018363.17	ENSMUST00000103067.10	5290	18	52131	0	-29286	0	3prime_fragment	FALSE	canonical	3	36	junction_13	6.3819189033463	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATACTGAGTTTTTACT	NA	False	NA	-6	True	AATAAA	-39	NA	106759410	106710891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013_106730118_106732425_106732622_106736808_106736968_106740573_106740659_106743272_106743476_106747006_106747091_106750537_106750623_106755537_106755604_106759360
ENSMUSG00000018363.17_10	chr11	-	2928	3	ISM	ENSMUSG00000018363.17	ENSMUST00000103067.10	5290	18	95951	3	4242	-3	3prime_fragment	FALSE	canonical	3	52	junction_1	1	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAGAATACTGAGTTTTT	9677	False	NA	-9	True	AATAAA	-36	NA	106715590	106710894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106713591_106713845_106713922_106715434
ENSMUSG00000018363.17_12	chr11	-	5239	18	FSM	ENSMUSG00000018363.17	ENSMUST00000103067.10	5290	18	34	17	34	-17	multi-exon	FALSE	canonical	2	5	junction_17	11.382314941417	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAGCGAGGTTTGTAAG	NA	False	NA	-23	True	AATAAA	-22	NA	106811507	106710908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013_106730118_106732425_106732622_106736808_106736968_106740573_106740659_106743272_106743476_106747006_106747091_106750537_106750623_106755537_106755604_106759360_106759495_106762327_106762437_106811006
ENSMUSG00000018363.17_15	chr11	-	3595	8	ISM	ENSMUSG00000018363.17	ENSMUST00000103067.10	5290	18	81453	10	36	-10	3prime_fragment	FALSE	canonical	3	37	junction_6	7.01892485516471	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGTTTGTAAGAATACTG	6414	False	NA	-16	True	AATAAA	-29	NA	106730088	106710901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013
ENSMUSG00000018363.17_25	chr11	-	4066	11	ISM	ENSMUSG00000018363.17	ENSMUST00000103067.10	5290	18	70891	0	-10526	0	3prime_fragment	TRUE	canonical	3	37	junction_6	6.31585306985525	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATACTGAGTTTTTACT	10004	False	NA	-6	True	AATAAA	-39	NA	106740650	106710891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013_106730118_106732425_106732622_106736808_106736968_106740573
ENSMUSG00000018363.17_4	chr11	-	5399	20	Fusion	ENSMUSG00002076856.1_ENSMUSG00000018363.17	novel	2358	20	NA	NA	30	-12	intron_retention	FALSE	canonical	3	9	junction_16	13.0135237562321	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGAGGTTTGTAAGAATAC	NA	False	NA	-18	True	AATAAA	-27	NA	106811511	106710903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013_106730118_106732425_106732622_106736808_106736968_106740573_106740659_106743272_106743476_106747006_106747091_106750537_106750623_106755537_106755604_106759360_106759495_106759822_106759935_106762327_106762437_106766726_106766766_106811006
ENSMUSG00000018363.17_5	chr11	-	3920	10	ISM	ENSMUSG00000018363.17	ENSMUST00000103067.10	5290	18	74629	14	-6788	-14	3prime_fragment	FALSE	canonical	3	37	junction_6	6.56778520272518	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCGAGGTTTGTAAGAAT	NA	False	NA	-20	True	AATAAA	-25	NA	106736912	106710905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013_106730118_106732425_106732622_106736808
ENSMUSG00000018363.17_6	chr11	-	5291	19	FSM	ENSMUSG00002076856.1_ENSMUSG00000018363.17	ENSMUST00000092517.9	3125	19	-224	-1942	21	-17	multi-exon	FALSE	canonical	3	28	junction_17	7.74038631121946	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAGCGAGGTTTGTAAG	NA	False	NA	-23	True	AATAAA	-22	NA	106811520	106710908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013_106730118_106732425_106732622_106736808_106736968_106740573_106740659_106743272_106743476_106747006_106747091_106750537_106750623_106755537_106755604_106759360_106759495_106762327_106762437_106766726_106766766_106811006
ENSMUSG00000018363.17_7	chr11	-	1548	1	ISM	ENSMUSG00000018363.17	ENSMUST00000103067.10	5290	18	99094	8	7385	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTTGTAAGAATACTGAG	2825	False	NA	-14	True	AATAAA	-31	NA	106712447	106710899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106710900_106712400
ENSMUSG00000018372.14_1	chr11	+	2711	20	FSM	ENSMUSG00000018372.14	ENSMUST00000018516.11	2696	20	-15	0	8	0	multi-exon	FALSE	canonical	0	0	junction_10	15.3330523078346	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTACTGCTTTTGAAT	5104	False	NA	10	True	AATAAA	-12	NA	106680085	106709679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106695818_106695948_106697061_106697256_106700017_106700128_106700453_106700584_106702021_106702176_106703221_106703362_106704586_106704689_106705429_106705563_106706293_106706464_106706559_106706635_106707478_106707632_106708659_106708807_106709021_106709094_106709359
ENSMUSG00000018372.14_25	chr11	+	3466	19	NIC	ENSMUSG00000018372.14	novel	2696	20	NA	NA	-6	0	intron_retention	FALSE	canonical	0	0	junction_10	14.8295875420278	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTACTGCTTTTGAAT	5090	False	NA	10	True	AATAAA	-12	NA	106680071	106709679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106695818_106695948_106697061_106697256_106700017_106700128_106700453_106700584_106702021_106702176_106703221_106703362_106704586_106705563_106706293_106706464_106706559_106706635_106707478_106707632_106708659_106708807_106709021_106709094_106709359
ENSMUSG00000018377.11_0	chr11	+	3581	6	FSM	ENSMUSG00000018377.11	ENSMUST00000018521.11	4583	6	-5	1007	-5	-1007	multi-exon	FALSE	canonical	3	100	junction_5	9.15641851380768	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAATATGTAGCTATGAC	NA	False	NA	7	True	AATAAA	-12	NA	87959099	87974548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87959260_87963882_87964578_87965487_87965552_87967016_87967201_87969228_87969382_87972223
ENSMUSG00000018377.11_10	chr11	+	1717	1	ISM	ENSMUSG00000018377.11	ENSMUST00000018521.11	4583	6	13728	1006	8419	-1006	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATATGTAGCTATGACT	NA	False	NA	8	True	AATAAA	-13	NA	87972832	87974549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_87972800_87974500
ENSMUSG00000018377.11_2	chr11	+	5655	6	NNC	ENSMUSG00000018377.11	novel	4583	6	NA	NA	-18	-1010	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	40.4257343779924	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAAAAATATGTAGCTAT	NA	False	NA	4	True	AATAAA	-9	NA	87959086	87974545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_87959260_87963882_87964578_87965487_87965552_87967016_87967201_87969228_87969382_87970159
ENSMUSG00000018377.11_3	chr11	+	3611	6	NIC	ENSMUSG00000018377.11	novel	4583	6	NA	NA	-16	-1006	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	44.5268458348444	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATATGTAGCTATGACT	NA	False	NA	8	True	AATAAA	-13	NA	87959088	87974549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_87959260_87963882_87964578_87965487_87965552_87966998_87967201_87969228_87969382_87972223
ENSMUSG00000018378.14_0	chr11	+	3087	11	FSM	ENSMUSG00000018378.14	ENSMUST00000018522.13	3180	11	82	11	-62	-11	multi-exon	FALSE	canonical	2	4	junction_1	5.85234995535981	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTCTGATGTGGCCAG	3417	False	NA	12	True	AATAAA	-16	NA	87990053	88084955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87990170_88060390_88061001_88068095_88068224_88073306_88073434_88074064_88074258_88075459_88075544_88077886_88077959_88078819_88078914_88079608_88079668_88080880_88080952_88083422
ENSMUSG00000018378.14_2	chr11	+	1085	1	Genic_Genomic	ENSMUSG00000018378.14	novel	NA	NA	NA	NA	-120	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTCATACTGCTATTAAA	3215	False	NA	NA	False	AATAAA	-17	NA	87989851	87990936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_87989900_87990900
ENSMUSG00000018378.14_8	chr11	+	2361	9	ISM	ENSMUSG00000018378.14	ENSMUST00000018522.13	3180	11	78122	13	-5035	-13	3prime_fragment	FALSE	canonical	3	15	junction_4	3.67423461417477	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGCTCTGATGTGGCC	-6	True	NA	10	True	AATAAA	-14	NA	88068093	88084953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_88068224_88073306_88073434_88074064_88074258_88075459_88075544_88077886_88077959_88078819_88078914_88079608_88079668_88080880_88080952_88083422
ENSMUSG00000018378.14_9	chr11	+	2891	5	ISM	ENSMUSG00000018378.14	ENSMUST00000154812.8	3163	11	23740	9	-8	-9	3prime_fragment	FALSE	canonical	3	20	junction_2	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCTGATGTGGCCAGCG	8271	False	NA	14	True	AATAAA	-18	NA	88076826	88084957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_88077959_88078819_88078914_88079608_88079668_88080880_88080952_88083422
ENSMUSG00000018379.18_0	chr11	+	2065	4	NIC	ENSMUSG00000018379.18	novel	896	4	NA	NA	-4	-6	intron_retention	FALSE	canonical	3	275	junction_3	562.44999777758	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACGATGCATGGTTGT	6591	False	NA	15	True	AATAAA	-9	NA	87938539	87942310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_87938859_87939315_87939501_87939868_87940922_87941802
ENSMUSG00000018379.18_1	chr11	+	2942	3	FSM	ENSMUSG00000018379.18	ENSMUST00000079866.11	2948	3	0	6	0	-6	multi-exon	FALSE	canonical	3	1310	junction_1	135	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACGATGCATGGTTGT	6595	False	NA	15	True	AATAAA	-9	NA	87938543	87942310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87938859_87939315_87939501_87939868
ENSMUSG00000018379.18_14	chr11	+	1867	1	ISM	ENSMUSG00000018379.18	ENSMUST00000139129.9	5362	4	2714	1802	675	463	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATAGAGTGTTCTGTCG	8964	False	NA	5	True	AATAAA	-19	NA	87940912	87942779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_87940900_87942800
ENSMUSG00000018379.18_2	chr11	+	2746	4	FSM	ENSMUSG00000018379.18	ENSMUST00000139129.9	5362	4	345	2271	0	-6	multi-exon	FALSE	canonical	3	1111	junction_3	192.19839287107	1552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACGATGCATGGTTGT	6595	False	NA	15	True	AATAAA	-9	NA	87938543	87942310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87938859_87939315_87939501_87939868_87940042_87940237
ENSMUSG00000018379.18_8	chr11	+	1876	5	NIC	ENSMUSG00000018379.18	novel	1209	5	NA	NA	-11	-6	intron_retention	FALSE	canonical	3	275	junction_4	487.699190075194	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACGATGCATGGTTGT	6584	False	NA	15	True	AATAAA	-9	NA	87938532	87942310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_87938859_87939315_87939501_87939868_87940042_87940237_87940922_87941802
ENSMUSG00000018381.16_0	chr11	-	1699	8	FSM	ENSMUSG00000018381.16	ENSMUST00000059026.10	4006	8	249	2058	-62	-189	multi-exon	FALSE	canonical	1	2	junction_7	1.51185789203691	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCCTTTATTGGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	95732986	95722957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95723703_95724034_95724161_95724465_95724627_95724828_95724925_95725131_95725218_95726603_95726781_95727895_95728064_95732846
ENSMUSG00000018395.20_0	chr11	+	2267	17	FSM	ENSMUSG00000018395.20	ENSMUST00000057330.15	2290	17	20	3	2	0	multi-exon	FALSE	canonical	2	5	junction_9	19.4950915296646	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGGAGAGAACTCCTT	939	False	NA	18	True	AATAAA	-15	NA	53458225	53491929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53484200_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
ENSMUSG00000018395.20_1	chr11	+	4046	18	NNC	ENSMUSG00000018395.20	novel	3161	18	NA	NA	1	1057	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	25.0891834866677	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCAGGTGGACATTGTTC	938	False	NA	3	True	ATTAAA	-19	NA	53458224	53493851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53484200_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837_53492680_53492823
ENSMUSG00000018395.20_19	chr11	+	115	1	Genic_Genomic	ENSMUSG00000018395.20	novel	NA	NA	NA	NA	7918	15	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53492694	53492809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_53492700_53492800
ENSMUSG00000018398.19_0	chr11	+	4465	10	FSM	ENSMUSG00000018398.19	ENSMUST00000117061.8	4563	10	94	4	-14	-3	multi-exon	FALSE	canonical	0	0	junction_3	33.8486099428282	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTTTCATGGTGTCAT	NA	False	NA	13	True	ATTAAA	-15	NA	53410720	53434919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_53410867_53422822_53422944_53425259_53425456_53425775_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53431856
ENSMUSG00000018398.19_1	chr11	+	4287	10	FSM	ENSMUSG00000018398.19	ENSMUST00000108987.8	4436	10	148	1	-14	-1	multi-exon	FALSE	canonical	0	0	junction_3	33.2766184179422	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTTCATGGTGTCATTT	NA	False	NA	15	True	ATTAAA	-17	NA	53410720	53434921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_53410867_53422822_53422944_53425259_53425456_53425775_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53432036
ENSMUSG00000018398.19_2	chr11	+	4292	10	NIC	ENSMUSG00000018398.19	novel	4436	10	NA	NA	-25	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	33.2766184179422	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTTCATGGTGTCATTT	NA	False	NA	15	True	ATTAAA	-17	NA	53410709	53434921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_53410867_53422822_53422944_53425259_53425456_53425781_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53432036
ENSMUSG00000018398.19_22	chr11	+	2040	1	ISM	ENSMUSG00000018398.19	ENSMUST00000108987.8	4436	10	22308	2	10003	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTTCATGGTGTCATT	2422	False	NA	14	True	ATTAAA	-16	NA	53432880	53434920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_53432900_53434900
ENSMUSG00000018398.19_7	chr11	+	4462	10	NIC	ENSMUSG00000018398.19	novel	4563	10	NA	NA	-16	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	33.8486099428282	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTTCATGGTGTCATT	NA	False	NA	14	True	ATTAAA	-16	NA	53410718	53434920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_53410867_53422822_53422944_53425259_53425456_53425781_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53431856
ENSMUSG00000018401.18_1	chr11	+	5697	19	FSM	ENSMUSG00000018401.18	ENSMUST00000103179.10	5753	19	34	22	-23	-22	multi-exon	FALSE	canonical	3	45	junction_1	26.7350973833791	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTCTATATTAGTGCT	NA	False	NA	-2	True	AATACA	-9	NA	87483021	87507106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87483077_87484214_87484260_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
ENSMUSG00000018401.18_14	chr11	+	5807	18	NIC	ENSMUSG00000018401.18	novel	792	7	NA	NA	24	-13	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	23.4398294690113	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTAGTGCTGCTTTGTTG	NA	False	NA	7	True	AATAAA	-7	NA	87486501	87507115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_87486703_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
ENSMUSG00000018401.18_3	chr11	+	4715	20	NIC	ENSMUSG00000018401.18	novel	4664	19	NA	NA	-18	2	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	38.4952419983262	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCACTTCCCCCATGTTG	NA	False	NA	5	True	AATAAA	-18	NA	87483026	87506000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_87483077_87483723_87483853_87484214_87484260_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
ENSMUSG00000018401.18_31	chr11	+	3186	4	ISM	ENSMUSG00000018401.18	ENSMUST00000092802.12	5525	18	19326	13	15893	-13	3prime_fragment	FALSE	canonical	3	136	junction_2	8.9566858950296	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTAGTGCTGCTTTGTTG	NA	False	NA	7	True	AATAAA	-7	NA	87502370	87507115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_87503143_87504247_87504359_87504597_87504687_87504901
ENSMUSG00000018405.8_0	chr11	-	2455	5	FSM	ENSMUSG00000018405.8	ENSMUST00000018549.8	2477	5	20	2	20	-2	multi-exon	FALSE	canonical	0	0	junction_4	44.51404272811	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCCCTGGAGTTGATTT	NA	False	NA	-6	True	AATAAA	-21	NA	84710321	84703888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_84705338_84705514_84705635_84705733_84705867_84709425_84709520_84709662
ENSMUSG00000018405.8_10	chr11	-	1826	4	ISM	ENSMUSG00000018405.8	ENSMUST00000018549.8	2477	5	791	3	10	-3	3prime_fragment	FALSE	canonical	3	90	junction_1	8.65383665716478	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTCCCTGGAGTTGATT	NA	False	NA	-7	True	AATAAA	-20	NA	84709550	84703889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_84705338_84705514_84705635_84705733_84705867_84709425
ENSMUSG00000018405.8_7	chr11	-	1121	1	ISM	ENSMUSG00000018405.8	ENSMUST00000018549.8	2477	5	5332	2	1207	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCCCTGGAGTTGATTT	NA	False	NA	-6	True	AATAAA	-21	NA	84705009	84703888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_84703900_84705000
ENSMUSG00000018411.18_0	chr11	+	1421	9	NIC	ENSMUSG00000018411.18	novel	5253	10	NA	NA	0	5	combination_of_known_splicesites	FALSE	canonical	3	21	junction_2	219.953652788491	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACATGTAAAAAC	NA	False	NA	10	True	AATAAA	-14	NA	104122304	104219266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_104122434_104173193_104173307_104185684_104185751_104193186_104193237_104197451_104197585_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_37	chr11	+	949	4	NIC	ENSMUSG00000018411.18	novel	5253	10	NA	NA	-7757	31	combination_of_known_splicesites	FALSE	canonical	3	463	junction_1	33.0386978489703	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTCCTTGGGCAAT	NA	False	NA	36	True	AATAAA	-40	NA	104201101	104219292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_43	chr11	+	1045	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8345	29	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	159	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAAAATTTCCTTGGGCA	9511	False	NA	34	True	AATAAA	-38	NA	104200513	104219290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_45	chr11	+	1113	6	NNC	ENSMUSG00000018411.18	novel	779	5	NA	NA	-8344	5	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_3	204.272954646473	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACATGTAAAAAC	9512	False	NA	10	True	AATAAA	-14	NA	104200514	104219266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_104200605_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_53	chr11	+	1109	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8165	30	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	186.526640188473	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAATTTCCTTGGGCAA	9691	False	NA	35	True	AATAAA	-39	NA	104200693	104219291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_104200848_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_62	chr11	+	1232	1	ISM	ENSMUSG00000018411.18	ENSMUST00000106992.10	5253	10	97449	2020	6890	1635	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	104219664	104220896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_104219700_104220900
ENSMUSG00000018411.18_63	chr11	+	1292	1	ISM	ENSMUSG00000018411.18	ENSMUST00000106992.10	5253	10	99403	6	8844	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACAAAAATCTCTGTT	NA	False	NA	NA	False	AATAAA	-13	NA	104221618	104222910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_104221600_104222900
ENSMUSG00000018412.17_0	chr11	-	5292	14	NIC	ENSMUSG00000018412.17	novel	5427	15	NA	NA	21	-15	combination_of_known_splicesites	FALSE	canonical	3	61	junction_11	60.3367277042696	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGATACAGAGAGTTTT	8190	False	NA	-17	True	NA	NA	NA	104333096	104224341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104269510_104269653_104314747_104316120_104332550
ENSMUSG00000018412.17_1	chr11	-	3989	13	ISM	ENSMUSG00000018412.17	ENSMUST00000106977.8	5510	14	17663	289	17074	-17	3prime_fragment	FALSE	canonical	3	79	junction_6	46.6990958751404	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGATACAGAGAGTT	NA	False	NA	-19	True	NA	NA	NA	104315454	104224343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747
ENSMUSG00000018412.17_12	chr11	-	4946	15	NIC	ENSMUSG00000018412.17	novel	5427	15	NA	NA	236	13	combination_of_known_junctions	FALSE	canonical	3	80	junction_14	49.9520688627956	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAATAATAAAAAA	8665	False	NA	-33	True	NA	NA	NA	104358581	104224357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104358464
ENSMUSG00000018412.17_14	chr11	-	5203	14	FSM	ENSMUSG00000018412.17	ENSMUST00000106977.8	5510	14	18	289	18	-17	multi-exon	FALSE	canonical	3	79	junction_6	53.9110597824222	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGATACAGAGAGTT	8187	False	NA	-19	True	NA	NA	NA	104333099	104224343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104332550
ENSMUSG00000018412.17_2	chr11	-	4788	15	NNC	ENSMUSG00000018412.17	novel	5061	15	NA	NA	-582	21	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_14	61.3522782039618	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAATAAAAAAAGATACAG	9750	False	NA	-25	True	NA	NA	NA	104360269	104224349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104358464_104358579_104360243
ENSMUSG00000018412.17_4	chr11	-	5421	15	FSM	ENSMUSG00000018412.17	ENSMUST00000106972.8	5427	15	-11	17	-11	-17	multi-exon	FALSE	canonical	3	85	junction_14	49.1984735120752	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGATACAGAGAGTT	8158	False	NA	-19	True	NA	NA	NA	104333128	104224343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104332550
ENSMUSG00000018412.17_6	chr11	-	4993	16	NNC	ENSMUSG00000018412.17	novel	5427	15	NA	NA	-582	-7	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_15	56.9102997903035	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGAGTTTTGTCAGGCT	9750	False	NA	-9	True	NA	NA	NA	104360269	104224333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104358464_104358579_104360243
ENSMUSG00000018412.17_7	chr11	-	5096	13	NIC	ENSMUSG00000018412.17	novel	5510	14	NA	NA	19	20	combination_of_known_splicesites	FALSE	canonical	3	61	junction_10	65.4221335295292	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATAATAAAAAAAGATACA	8188	False	NA	-26	True	NA	NA	NA	104333098	104224350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104269510_104269653_104314747_104316120_104332550
ENSMUSG00000018415.15_0	chr11	+	4246	6	FSM	ENSMUSG00000018415.15	ENSMUST00000070681.7	4283	6	27	10	27	-10	multi-exon	FALSE	canonical	3	383	junction_3	37.1408131305711	815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGTGTGTGTCCAATTT	NA	False	NA	17	True	AATAAA	-8	NA	60308114	60336093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804
ENSMUSG00000018415.15_23	chr11	+	2125	1	ISM	ENSMUSG00000018415.15	ENSMUST00000070681.7	4283	6	25885	6	25885	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGTGTCCAATTTGTAA	NA	False	NA	21	True	AATAAA	-12	NA	60333972	60336097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60334000_60336100
ENSMUSG00000018417.15_3	chr1	-	4694	30	FSM	ENSMUSG00000018417.15	ENSMUST00000046390.14	5052	30	134	224	4	0	multi-exon	FALSE	canonical	3	36	junction_8	59.0883173807801	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCTGGATTACAACTGTA	NA	False	NA	NA	False	AATAAA	-21	NA	51955096	51789147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_51790456_51794801_51794930_51796263_51796417_51797034_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
ENSMUSG00000018417.15_4	chr1	-	4780	31	FSM	ENSMUSG00000018417.15	ENSMUST00000018561.14	4767	31	-9	-4	4	-1	multi-exon	FALSE	canonical	3	256	junction_21	30.4396671028665	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCTGGATTACAACTGT	NA	False	NA	NA	False	AATAAA	-20	NA	51955096	51789148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_51790456_51794801_51794930_51796263_51796417_51797034_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51807808_51807896_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
ENSMUSG00000018425.19_0	chr11	-	2771	18	FSM	ENSMUSG00000018425.19	ENSMUST00000018569.14	3813	18	136	906	136	-906	multi-exon	FALSE	canonical	3	128	junction_4	18.4312056730034	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCTTCAAGGCCTTCT	8663	False	NA	-8	True	ATTAAA	-14	NA	86698436	86660577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
ENSMUSG00000018427.9_0	chr11	-	4855	5	FSM	ENSMUSG00000018427.9	ENSMUST00000018571.5	4847	5	-17	9	-17	-9	multi-exon	FALSE	canonical	3	55	junction_1	6.94172168845741	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACTAACTCTTGGGAGA	NA	False	NA	-17	True	AATAAA	-7	NA	86884550	86827259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86831515_86835398_86835508_86836758_86836803_86862634_86862949_86884417
ENSMUSG00000018427.9_1	chr11	-	2995	1	ISM	ENSMUSG00000018427.9	ENSMUST00000018571.5	4847	5	54283	5	32600	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACTCTTGGGAGAATGT	8474	False	NA	-13	True	AATAAA	-11	NA	86830250	86827255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_86827300_86830200
ENSMUSG00000018427.9_2	chr11	-	4568	4	FSM	ENSMUSG00000018427.9	ENSMUST00000238921.2	459	4	63	-4172	63	-2	multi-exon	FALSE	canonical	3	55	junction_1	1.69967317119759	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTTGGGAGAATGTCTG	4865	False	NA	-10	True	AATAAA	-14	NA	86862787	86827252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86831515_86835398_86835508_86836758_86836803_86862634
ENSMUSG00000018428.16_0	chr11	-	3683	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	66	9	66	-9	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	1832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCTAACCTTGAGTCCA	NA	False	NA	83	True	CATAAA	-14	NA	88755346	88721626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
ENSMUSG00000018428.16_2	chr11	-	2937	10	ISM	ENSMUSG00000018428.16	ENSMUST00000107903.8	3721	11	6265	4	-740	-4	3prime_fragment	FALSE	canonical	3	816	junction_2	51.9631873493743	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACCTTGAGTCCATTTTT	NA	False	NA	88	True	TATAAA	-3	NA	88736064	88721621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084
ENSMUSG00000018433.15_0	chr11	-	3039	18	FSM	ENSMUSG00000018433.15	ENSMUST00000018577.8	3158	18	113	6	84	-6	multi-exon	FALSE	canonical	3	283	junction_14	59.6645176908376	706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTACCAAATAATGAAAATG	1214	False	NA	NA	False	TATAAA	-6	NA	107080094	107057494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ENSMUSG00000018433.15_1	chr11	-	2711	18	FSM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	113	274	84	-274	multi-exon	FALSE	canonical	3	50	junction_5	109.451004980994	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATGAAGAAGCTGCAA	1214	False	NA	NA	False	NA	NA	NA	107080094	107057762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064228_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ENSMUSG00000018442.14_0	chr11	-	3606	7	FSM	ENSMUSG00000018442.14	ENSMUST00000143850.8	3666	7	51	9	-9	-9	multi-exon	FALSE	canonical	3	526	junction_4	25.493463214453	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGCAAACTATTATCTTG	NA	False	NA	-12	True	NA	NA	NA	70910078	70898276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70909969
ENSMUSG00000018442.14_3	chr11	-	2649	1	ISM	ENSMUSG00000018442.14	ENSMUST00000143850.8	3666	7	9207	6	9116	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAACTATTATCTTGTAT	NA	False	NA	-9	True	NA	NA	NA	70900922	70898273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_70898300_70900900
ENSMUSG00000018446.9_0	chr11	-	1120	6	FSM	ENSMUSG00000018446.9	ENSMUST00000078528.7	1175	6	33	22	14	-10	multi-exon	FALSE	canonical	3	4814	junction_4	225.05234946563	2612	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATCTCCAGGAAAGTT	NA	False	NA	28	True	AATAAA	-10	NA	70873819	70868683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70869071_70869253_70869377_70869514_70869611_70870835_70870930_70872995_70873147_70873550
ENSMUSG00000018449.13_0	chr11	+	791	7	FSM	ENSMUSG00000018449.13	ENSMUST00000018593.10	1100	7	278	31	0	1	multi-exon	FALSE	canonical	3	224	junction_4	48.3922055248111	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	14	True	ATTAAA	-15	NA	70861316	70868628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865725_70865867_70868483
ENSMUSG00000018449.13_2	chr11	+	2437	4	NIC	ENSMUSG00000018449.13	novel	548	6	NA	NA	4	-1	intron_retention	FALSE	canonical	3	300	junction_3	33.0689515339624	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGGTGTTCTGATGTGG	NA	False	NA	16	True	ATTAAA	-17	NA	70861320	70868630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70861414_70862589_70862761_70863840_70865867_70868483
ENSMUSG00000018449.13_4	chr11	+	1554	6	NIC	ENSMUSG00000018449.13	novel	1100	7	NA	NA	4	1	intron_retention	FALSE	canonical	3	224	junction_4	52.6748516846512	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	14	True	ATTAAA	-15	NA	70861320	70868628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70865867_70868483
ENSMUSG00000018449.13_5	chr11	+	674	6	FSM	ENSMUSG00000018449.13	ENSMUST00000171254.8	548	6	-10	-116	6	2	multi-exon	FALSE	canonical	3	39	junction_3	115.373480488369	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGGTGTTCTGATGTG	NA	False	NA	15	True	ATTAAA	-16	NA	70861322	70868629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70864959_70865725_70865867_70868483
ENSMUSG00000018449.13_7	chr11	+	1444	5	NIC	ENSMUSG00000018449.13	novel	548	6	NA	NA	4	-1	intron_retention	FALSE	canonical	3	39	junction_3	128.657248144051	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGGTGTTCTGATGTGG	NA	False	NA	16	True	ATTAAA	-17	NA	70861320	70868630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70865867_70868483
ENSMUSG00000018449.13_8	chr11	+	5064	3	FSM	ENSMUSG00000018449.13	ENSMUST00000129531.8	745	3	-7	-4312	-2	2	multi-exon	FALSE	canonical	3	311	junction_2	32	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGGTGTTCTGATGTG	NA	False	NA	15	True	ATTAAA	-16	NA	70861309	70868629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70861414_70862589_70862761_70863840
ENSMUSG00000018470.9_0	chr11	+	2518	14	FSM	ENSMUSG00000018470.9	ENSMUST00000018614.3	2538	14	13	7	13	-7	multi-exon	FALSE	canonical	3	22	junction_1	7.85293824331087	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTCACGACCACGTCTGA	NA	False	NA	4	True	AATAAA	-13	NA	69217096	69223861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69217750_69218945_69218990_69219076_69219115_69219334_69219415_69220675_69220721_69220808_69220854_69221008_69221053_69221222_69221310_69221565_69221652_69221876_69221998_69222087_69222183_69222285_69222407_69222561_69222651_69222891
ENSMUSG00000018470.9_1	chr11	+	3978	11	NIC	ENSMUSG00000018470.9	novel	2126	13	NA	NA	7	-74	intron_retention	FALSE	canonical	3	36	junction_1	5.12249938994628	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAATAAAGATGGCCCC	NA	False	NA	-63	True	AATAAA	-4	NA	69217090	69223794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_69218990_69219076_69219115_69219334_69219415_69220675_69220721_69220808_69221310_69221565_69221652_69221876_69221998_69222087_69222183_69222285_69222407_69222561_69222651_69222891
ENSMUSG00000018470.9_17	chr11	+	1267	3	ISM	ENSMUSG00000018470.9	ENSMUST00000134561.2	750	7	1046	-889	1046	-10	3prime_fragment	FALSE	canonical	3	49	junction_1	1	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATCCTCACGACCACGTC	NA	False	NA	1	True	AATAAA	-10	NA	69222195	69223858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_69222407_69222561_69222651_69222891
ENSMUSG00000018474.19_11	chr11	-	1687	4	ISM	ENSMUSG00000018474.19	ENSMUST00000122992.2	2153	7	1803	0	327	0	3prime_fragment	FALSE	canonical	3	33	junction_3	13.9283882771841	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGCTGTCATTTTTGCC	NA	False	NA	-11	True	TATAAA	-16	NA	69237633	69234098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69235305_69235961_69236089_69236296_69236461_69237443
ENSMUSG00000018474.19_19	chr11	-	1908	6	ISM	ENSMUSG00000018474.19	ENSMUST00000122992.2	2153	7	776	0	-700	0	3prime_fragment	FALSE	canonical	3	33	junction_3	10.807404868885	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGCTGTCATTTTTGCC	NA	False	NA	-11	True	TATAAA	-16	NA	69238660	69234098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69235305_69235961_69236089_69236296_69236461_69237443_69237640_69237891_69238025_69238578
ENSMUSG00000018474.19_24	chr11	-	3265	17	ISM	ENSMUSG00000018474.19	ENSMUST00000108661.8	7261	40	16148	2	1209	-2	3prime_fragment	FALSE	canonical	3	33	junction_3	9.20576415893868	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCGTGCTGTCATTTTTG	NA	False	NA	-13	True	TATAAA	-14	NA	69244084	69234100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69235305_69235961_69236089_69236296_69236461_69237443_69237640_69237891_69238025_69238578_69238688_69239218_69239348_69239535_69239638_69239746_69239883_69239996_69240119_69240615_69240779_69240932_69241078_69241617_69241752_69241909_69241996_69242925_69242992_69243372_69243551_69244013
ENSMUSG00000018474.19_38	chr11	-	7258	40	NIC	ENSMUSG00000018474.19	novel	7261	40	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_39	13.6765971522413	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGCTGTCATTTTTGCC	NA	False	NA	-11	True	TATAAA	-16	NA	69260201	69234098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69235305_69235961_69236089_69236296_69236461_69237397_69237640_69237891_69238025_69238578_69238688_69239218_69239348_69239535_69239638_69239746_69239883_69239996_69240119_69240615_69240779_69240932_69241078_69241617_69241752_69241909_69241996_69242925_69242992_69243372_69243551_69244013_69244181_69244489_69244722_69244887_69245013_69245190_69245309_69246164_69246297_69246456_69246599_69247032_69247207_69247361_69247484_69247763_69247902_69248190_69248392_69248530_69248723_69249068_69249169_69249952_69250085_69250652_69250865_69250997_69251202_69251370_69251602_69251874_69252051_69252210_69252362_69252496_69252628_69252861_69253149_69254445_69254571_69254798_69254970_69255517_69255631_69259961
ENSMUSG00000018474.19_47	chr11	-	845	1	ISM	ENSMUSG00000018474.19	ENSMUST00000135909.8	1882	3	1902	0	1902	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGCTGTCATTTTTGCC	2093	False	NA	-11	True	TATAAA	-16	NA	69234943	69234098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69234100_69234900
ENSMUSG00000018474.19_52	chr11	-	6043	33	NIC	ENSMUSG00000018474.19	novel	7261	40	NA	NA	494	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	12.0349426151519	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGCTGTCATTTTTGCC	NA	False	NA	-11	True	TATAAA	-16	NA	69252053	69234098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69235305_69235961_69236089_69236296_69236461_69237397_69237640_69237891_69238025_69238578_69238688_69239218_69239348_69239535_69239638_69239746_69239883_69239996_69240119_69240615_69240779_69240932_69241078_69241617_69241752_69241909_69241996_69242925_69242992_69243372_69243551_69244013_69244181_69244489_69244722_69244887_69245013_69245190_69245309_69246164_69246297_69246456_69246599_69247032_69247207_69247361_69247484_69247763_69247902_69248190_69248392_69248530_69248723_69249068_69249169_69249952_69250085_69250652_69250865_69250997_69251202_69251370_69251602_69251874
ENSMUSG00000018474.19_59	chr11	-	3419	18	ISM	ENSMUSG00000018474.19	ENSMUST00000108661.8	7261	40	15685	2	746	-2	3prime_fragment	FALSE	canonical	3	33	junction_3	8.93846708175548	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCGTGCTGTCATTTTTG	NA	False	NA	-13	True	TATAAA	-14	NA	69244547	69234100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69235305_69235961_69236089_69236296_69236461_69237443_69237640_69237891_69238025_69238578_69238688_69239218_69239348_69239535_69239638_69239746_69239883_69239996_69240119_69240615_69240779_69240932_69241078_69241617_69241752_69241909_69241996_69242925_69242992_69243372_69243551_69244013_69244181_69244489
ENSMUSG00000018476.8_0	chr11	-	2672	11	ISM	ENSMUSG00000018476.8	ENSMUST00000094077.5	6654	23	10000	3	540	-3	3prime_fragment	FALSE	canonical	3	11	junction_5	6.04069532421558	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGACCCTTGTGTTTTG	NA	False	NA	-6	True	AATAAA	-16	NA	69294501	69289336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69290676_69290765_69290937_69291021_69291149_69291532_69291675_69291818_69292007_69292088_69292204_69292340_69292490_69292584_69292657_69292742_69292808_69292901_69293108_69294403
ENSMUSG00000018476.8_1	chr11	-	3572	13	ISM	ENSMUSG00000018476.8	ENSMUST00000094077.5	6654	23	8881	27	-579	-27	3prime_fragment	FALSE	canonical	3	11	junction_5	5.70270403697521	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAGCAGGAAAAA	NA	False	NA	-30	True	NA	NA	NA	69295620	69289360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69290676_69290765_69290937_69291021_69291149_69291532_69291675_69291818_69292007_69292088_69292204_69292340_69292490_69292584_69292657_69292742_69292808_69292901_69293108_69294403_69294510_69294615_69294743_69294831
ENSMUSG00000018476.8_10	chr11	-	4958	15	ISM	ENSMUSG00000018476.8	ENSMUST00000094077.5	6654	23	6956	394	-2504	-394	3prime_fragment	FALSE	canonical	1	1	junction_14	7.51630879881765	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAATAAATAAA	NA	False	NA	-42	True	NA	NA	NA	69297545	69289727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69290676_69290765_69290937_69291021_69291149_69291532_69291675_69291818_69292007_69292088_69292204_69292340_69292490_69292584_69292657_69292742_69292808_69292901_69293108_69294403_69294510_69294615_69294743_69294831_69297000_69297084_69297436_69297522
ENSMUSG00000018476.8_16	chr11	-	1600	3	ISM	ENSMUSG00000018476.8	ENSMUST00000094077.5	6654	23	13375	18	3915	-18	3prime_fragment	FALSE	canonical	3	24	junction_2	2	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGCAGGAAAAAAAAAAAAGA	NA	False	NA	-21	True	AATAAA	-1	NA	69291126	69289351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69290676_69290765_69290937_69291021
ENSMUSG00000018476.8_3	chr11	-	2464	10	ISM	ENSMUSG00000018476.8	ENSMUST00000094077.5	6654	23	11486	21	2026	-21	3prime_fragment	FALSE	canonical	3	11	junction_5	6.0205409707307	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGCAGGAAAAAAAAAAA	NA	False	NA	-24	True	ATTAAA	-4	NA	69293015	69289354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69290676_69290765_69290937_69291021_69291149_69291532_69291675_69291818_69292007_69292088_69292204_69292340_69292490_69292584_69292657_69292742_69292808_69292901
ENSMUSG00000018476.8_5	chr11	-	722	1	ISM	ENSMUSG00000018476.8	ENSMUST00000094077.5	6654	23	14431	15	4971	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGGAAAAAAAAAAAAGAGAC	NA	False	NA	-18	True	AATAAA	-4	NA	69290070	69289348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69289300_69290100
ENSMUSG00000018481.10_0	chr11	-	4193	13	FSM	ENSMUSG00000018481.10	ENSMUST00000018625.10	6463	13	53	2217	53	-2217	multi-exon	TRUE	canonical	3	360	junction_12	22.6180544894756	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTAAGTTTTCACATG	NA	False	NA	-21	True	AATAAA	-7	NA	85125903	85080304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_85082726_85085400_85085567_85086891_85087083_85088891_85088978_85091119_85091245_85092241_85092348_85092428_85092497_85095059_85095150_85100765_85100935_85105061_85105186_85105935_85106088_85107261_85107351_85125497
ENSMUSG00000018481.10_1	chr11	-	3191	1	ISM	ENSMUSG00000018481.10	ENSMUST00000018625.10	6463	13	44666	12	44666	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCGTAGTGTATGCTTCCG	2191	False	NA	-12	True	AATAAA	-13	NA	85081290	85078099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_85078100_85081300
ENSMUSG00000018500.3_0	chr11	+	1827	2	FSM	ENSMUSG00000018500.3	ENSMUST00000018644.3	1845	2	11	7	11	-7	multi-exon	FALSE	canonical	3	17	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCCAGCACGCACTGGCT	8734	False	NA	NA	False	AATAAA	-13	NA	62139820	62157272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62140263_62155887
ENSMUSG00000018501.18_323	chr11	-	3171	9	FSM	ENSMUSG00000018501.18	ENSMUST00000069456.11	3171	9	2	-2	2	2	multi-exon	FALSE	canonical	3	310	junction_1	63.6836664695116	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCGCACCATAAATTTTTAA	NA	False	NA	NA	False	AATAAA	-16	NA	62348147	62292206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
ENSMUSG00000018507.17_0	chr11	+	2681	15	ISM	ENSMUSG00000018507.17	ENSMUST00000018651.14	2909	16	1385	216	-202	0	3prime_fragment	FALSE	canonical	1	1	junction_1	4.86553896169326	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCAAGTCTTCTAGAAG	8126	False	NA	9	True	TATAAA	-11	NA	62466748	62491125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_62466952_62469128_62469422_62471997_62472132_62473668_62473960_62475201_62475501_62480476_62480651_62480988_62481145_62481732_62481832_62483051_62483123_62483576_62483743_62484978_62485046_62485748_62486078_62487735_62487864_62489059_62489140_62490934
ENSMUSG00000018509.9_1	chr11	-	989	5	FSM	ENSMUSG00000018509.9	ENSMUST00000018653.8	1032	5	38	5	38	-2	multi-exon	FALSE	canonical	3	1369	junction_4	69.2639877569867	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCTATTACTATGACATA	8409	False	NA	-19	True	AATAAA	-14	NA	62430049	62415776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_62416114_62418317_62418433_62424710_62424781_62427107_62427207_62429681
ENSMUSG00000018509.9_5	chr11	-	2882	3	ISM	ENSMUSG00000018509.9	ENSMUST00000123542.8	536	5	2171	-192	2171	-2	intron_retention	FALSE	canonical	3	1520	junction_2	11	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCTATTACTATGACATA	6507	False	NA	-19	True	AATAAA	-14	NA	62427140	62415776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_62416114_62418317_62418433_62424710
ENSMUSG00000018537.17_1	chr11	-	1578	10	ISM	ENSMUSG00000018537.17	ENSMUST00000103148.8	1438	11	82	13	22	-13	intron_retention	FALSE	canonical	3	57	junction_9	50.8265022732564	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACATAGGAAAAACCAAATA	NA	False	NA	-5	True	NA	NA	NA	97590385	97580658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590031
ENSMUSG00000018537.17_18	chr11	-	1236	9	ISM	ENSMUSG00000018537.17	ENSMUST00000103148.8	1438	11	6069	5	-1163	-5	3prime_fragment	FALSE	canonical	3	189	junction_6	17.8321163914999	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACCAAATATACATACT	NA	False	NA	3	True	NA	NA	NA	97584398	97580650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241
ENSMUSG00000018537.17_3	chr11	-	1334	10	FSM	ENSMUSG00000018537.17	ENSMUST00000169807.8	2347	10	6	1007	-1	-10	multi-exon	FALSE	canonical	3	83	junction_9	43.2000800182158	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAGGAAAAACCAAATATAC	NA	False	NA	-2	True	NA	NA	NA	97590468	97580655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
ENSMUSG00000018537.17_42	chr11	-	162	1	ISM	ENSMUSG00000018537.17	ENSMUST00000126185.2	470	4	2208	13	2011	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAATAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97588199	97588037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97588000_97588200
ENSMUSG00000018541.11_0	chr11	-	3104	10	FSM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	1	0	1	0	multi-exon	FALSE	canonical	3	107	junction_2	12.1969435556112	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTAGAGCGATCTAC	7436	False	NA	-21	True	AATAAA	-19	NA	97657381	97636440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97638296_97638786_97638949_97641697_97641788_97643395_97643590_97644041_97644106_97644730_97644859_97646976_97647047_97648398_97648636_97654034_97654208_97657250
ENSMUSG00000018541.11_1	chr11	-	1117	1	ISM	ENSMUSG00000018541.11	ENSMUST00000124356.2	2450	3	4439	134	4439	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTAGAGCGATCTAC	NA	False	NA	-21	True	AATAAA	-19	NA	97637557	97636440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97636400_97637600
ENSMUSG00000018541.11_5	chr11	-	2877	9	ISM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	3271	0	3255	0	3prime_fragment	FALSE	canonical	3	107	junction_2	11.8420595759353	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTAGAGCGATCTAC	9577	False	NA	-21	True	AATAAA	-19	NA	97654111	97636440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97638296_97638786_97638949_97641697_97641788_97643395_97643590_97644041_97644106_97644730_97644859_97646976_97647047_97648398_97648636_97654034
ENSMUSG00000018543.9_0	chr11	-	1384	3	FSM	ENSMUSG00000018543.9	ENSMUST00000107576.2	624	3	40	-800	40	800	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACCTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97666704	97661506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97662564_97663541_97663642_97666477
ENSMUSG00000018547.9_0	chr11	-	3536	10	FSM	ENSMUSG00000018547.9	ENSMUST00000018691.9	5053	10	11	1506	11	-1506	multi-exon	FALSE	canonical	3	13	junction_3	2.70801280154532	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAAGTTTTCTTTCTCTT	NA	False	NA	-2	True	TTTAAA	-20	NA	97635519	97607488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97609766_97610555_97610660_97611048_97611308_97613187_97613302_97613765_97613805_97615204_97615352_97617530_97617684_97620379_97620477_97623483_97623582_97635271
ENSMUSG00000018547.9_1	chr11	-	1254	1	ISM	ENSMUSG00000018547.9	ENSMUST00000018691.9	5053	10	28291	3	10330	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCTGGTATGTGAGTCCT	NA	False	NA	-8	True	AATAAA	-19	NA	97607239	97605985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97606000_97607200
ENSMUSG00000018547.9_2	chr11	-	4309	6	ISM	ENSMUSG00000018547.9	ENSMUST00000018691.9	5053	10	20304	12	2343	-12	3prime_fragment	FALSE	canonical	3	13	junction_3	1.95959179422654	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGTACATCTGGTAT	NA	False	NA	-17	True	AATAAA	-10	NA	97615226	97605994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97609766_97610555_97610660_97611048_97611308_97613187_97613302_97613765_97613805_97615204
ENSMUSG00000018547.9_5	chr11	-	628	1	ISM	ENSMUSG00000018547.9	ENSMUST00000018691.9	5053	10	27275	1645	9314	-1645	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTAGGTTTGTTGTTTTT	NA	False	NA	-28	True	NA	NA	NA	97608255	97607627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97607600_97608300
ENSMUSG00000018548.16_0	chr11	+	4315	24	FSM	ENSMUSG00000018548.16	ENSMUST00000041282.13	5632	24	111	1206	111	-1206	multi-exon	FALSE	canonical	3	377	junction_12	47.8466359016781	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATGTGCCTCTGCAGT	2027	False	NA	20	True	AATAAA	-10	NA	87018013	87110303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077
ENSMUSG00000018548.16_2	chr11	+	3457	25	NNC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	102	30187	at_least_one_novel_splicesite	TRUE	canonical	3	225	junction_24	67.5794671109502	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGTTTTGTCATAATTT	2018	False	NA	4	True	NA	NA	NA	87018004	87141696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077_87109157_87141416
ENSMUSG00000018554.14_0	chr11	+	3665	5	NIC	ENSMUSG00000018554.14	novel	1673	9	NA	NA	905	1	intron_retention	FALSE	canonical	3	80	junction_3	5.06828373317832	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTGTTGTCCTGGTCTCT	NA	False	NA	12	True	AGTAAA	-15	NA	69828057	69832422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
ENSMUSG00000018554.14_1	chr11	+	3719	6	NIC	ENSMUSG00000018554.14	novel	1673	9	NA	NA	304	0	intron_retention	FALSE	canonical	3	43	junction_1	17.8840711248865	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTGTCCTGGTCTC	NA	False	NA	11	True	AGTAAA	-14	NA	69827456	69832421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_69830154_69830699_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
ENSMUSG00000018554.14_12	chr11	+	3267	7	NIC	ENSMUSG00000018554.14	novel	1673	9	NA	NA	-94	0	intron_retention	FALSE	canonical	3	36	junction_1	22.5141930543577	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTGTCCTGGTCTC	NA	False	NA	11	True	AGTAAA	-14	NA	69826527	69832421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_69827787_69829167_69830154_69830699_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
ENSMUSG00000018554.14_3	chr11	+	1628	9	FSM	ENSMUSG00000018554.14	ENSMUST00000018698.12	1673	9	35	10	35	0	multi-exon	FALSE	canonical	3	30	junction_3	26.1291862674673	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTGTCCTGGTCTC	NA	False	NA	11	True	AGTAAA	-14	NA	69826656	69832421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69827075_69827722_69827787_69829167_69829202_69830063_69830154_69830699_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
ENSMUSG00000018554.14_7	chr11	+	2311	8	NIC	ENSMUSG00000018554.14	novel	1673	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	30	junction_2	25.2384546245751	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTGTCCTGGTCTC	NA	False	NA	11	True	AGTAAA	-14	NA	69826621	69832421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_69827787_69829167_69829202_69830063_69830154_69830699_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
ENSMUSG00000018554.14_8	chr11	+	3026	7	NIC	ENSMUSG00000018554.14	novel	1673	9	NA	NA	34	8	intron_retention	FALSE	canonical	3	31	junction_1	25.2498624858742	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAGCAGGCTTTCTTGTT	NA	False	NA	0	True	AGTAAA	-3	NA	69826655	69832410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_69827075_69827722_69827787_69829167_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
ENSMUSG00000018559.17_0	chr11	+	1956	8	FSM	ENSMUSG00000018559.17	ENSMUST00000108593.8	1627	8	-337	8	-337	-8	multi-exon	FALSE	canonical	3	123	junction_4	14.8020958251299	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAAGCTGCCCTAGAC	NA	False	NA	NA	False	TTTAAA	-19	NA	69871644	69881419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69872412_69875079_69875147_69875241_69875361_69875559_69875632_69879438_69879556_69879653_69879766_69880307_69880393_69880802
ENSMUSG00000018559.17_4	chr11	+	3480	11	Fusion	ENSMUSG00000018559.17_ENSMUSG00000018567.15	novel	1627	8	NA	NA	30	2	multi-exon	FALSE	canonical	3	123	junction_4	345.23319654981	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTGAATTTGCCCTGTG	NA	False	NA	7	True	AATAAA	-17	NA	69872011	69885768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr11_+_69872412_69875079_69875147_69875241_69875361_69875559_69875632_69879438_69879556_69879653_69879766_69880307_69880393_69880802_69882629_69883190_69883270_69883407_69883527_69885284
ENSMUSG00000018559.17_9	chr11	+	515	2	FSM	ENSMUSG00000018559.17	ENSMUST00000138246.2	677	2	414	-252	394	7	multi-exon	FALSE	canonical	3	150	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAATTCTTCACTCCTGC	3070	False	NA	NA	False	TTTAAA	-19	NA	69880310	69881235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69880393_69880802
ENSMUSG00000018565.18_0	chr11	-	1101	8	ISM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	989	8	0	0	3prime_fragment	FALSE	canonical	3	471	junction_7	49.073455978081	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAAAACCTCTGGTAATG	9889	False	NA	-8	True	AATAAA	-22	NA	69871089	69859057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039
ENSMUSG00000018565.18_1	chr11	-	1217	7	FSM	ENSMUSG00000018565.18	ENSMUST00000123701.9	1259	7	39	3	-13	1	multi-exon	FALSE	canonical	3	523	junction_1	38.6393581727233	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAAACCTCTGGTAATGC	9928	False	NA	-7	True	AATAAA	-23	NA	69871050	69859056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824
ENSMUSG00000018565.18_4	chr11	-	917	7	NIC	ENSMUSG00000018565.18	novel	1454	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_3	199.363710060003	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAAAACCTCTGGTAATG	9891	False	NA	-8	True	AATAAA	-22	NA	69871087	69859057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69859367_69859921_69860023_69860318_69860415_69865865_69866087_69870655_69870737_69870824_69870886_69871039
ENSMUSG00000018566.15_0	chr11	-	2546	11	FSM	ENSMUSG00000018566.15	ENSMUST00000018710.13	2524	11	-26	4	0	-4	multi-exon	FALSE	canonical	3	12	junction_2	3.57910603363466	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATGAGTGTCCTGTGC	NA	False	NA	-2	True	ATTAAA	-36	NA	69839001	69833372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69834399_69834884_69835089_69835612_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
ENSMUSG00000018566.15_1	chr11	-	3055	10	FSM	ENSMUSG00000018566.15	ENSMUST00000141837.9	1776	10	-32	-1247	-8	-2	multi-exon	FALSE	canonical	3	12	junction_1	3.19722101554181	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGAGTGTCCTGTGCTG	NA	False	NA	0	True	ATTAAA	-38	NA	69839022	69833370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69835089_69835612_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
ENSMUSG00000018567.15_0	chr11	+	881	4	FSM	ENSMUSG00000018567.15	ENSMUST00000018711.15	1351	4	463	7	-33	4	multi-exon	FALSE	canonical	3	795	junction_2	75.6350888587213	265	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGAATTTGCCCTGTGTC	5191	False	NA	9	True	AATAAA	-19	NA	69882431	69885770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69882629_69883190_69883270_69883407_69883527_69885284
ENSMUSG00000018569.13_1	chr11	+	1269	4	FSM	ENSMUSG00000018569.13	ENSMUST00000018713.13	1335	4	60	6	60	-3	multi-exon	TRUE	canonical	3	113	junction_1	5.71547606649408	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTAGGTCTTTCCAGGCC	8803	False	NA	3	True	AATAAA	-13	NA	69856281	69858705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69856976_69857768_69857934_69858045_69858131_69858380
ENSMUSG00000018570.18_0	chr11	-	1449	8	FSM	ENSMUSG00000018570.18	ENSMUST00000018714.13	1485	8	40	-4	-4	-1	multi-exon	FALSE	canonical	2	12	junction_7	3.28260722659316	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGGAGCTGCGTGTC	9785	False	NA	-9	True	AATAAA	-19	NA	69791724	69788184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
ENSMUSG00000018570.18_2	chr11	-	1581	8	NIC	ENSMUSG00000018570.18	novel	2009	8	NA	NA	-20	-1	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	5.03457433905888	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGGAGCTGCGTGTC	9769	False	NA	-9	True	AATAAA	-19	NA	69791740	69788184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790753_69791128
ENSMUSG00000018570.18_6	chr11	-	1607	9	NIC	ENSMUSG00000018570.18	novel	1640	9	NA	NA	-20	2	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	5.70087712549569	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGGGAGCTGCGTG	9769	False	NA	-11	True	AATAAA	-17	NA	69791740	69788186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69788319_69788436_69788581_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
ENSMUSG00000018572.11_16	chr11	+	1338	2	ISM	ENSMUSG00000018572.11	ENSMUST00000135814.2	2214	4	1453	2	1453	-2	3prime_fragment	FALSE	canonical	3	573	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGCCCTCCTTGTCCTA	5102	False	NA	11	True	AATAAA	-21	NA	69889387	69890830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_69889959_69890063
ENSMUSG00000018572.11_4	chr11	+	1945	5	FSM	ENSMUSG00000018572.11	ENSMUST00000018716.10	2006	5	57	4	-42	-1	multi-exon	FALSE	canonical	3	427	junction_3	63.9193828192982	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCCTCCTTGTCCTAT	2374	False	NA	12	True	AATAAA	-22	NA	69886659	69890831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889126_69889959_69890063
ENSMUSG00000018572.11_5	chr11	+	1742	5	FSM	ENSMUSG00000018572.11	ENSMUST00000101526.9	1706	5	-41	5	-41	-2	multi-exon	FALSE	canonical	3	83	junction_3	201.26273251648	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGCCCTCCTTGTCCTA	2375	False	NA	11	True	AATAAA	-21	NA	69886660	69890830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889327_69889959_69890063
ENSMUSG00000018574.15_0	chr11	-	2147	20	FSM	ENSMUSG00000018574.15	ENSMUST00000102574.10	2168	20	10	11	1	-5	multi-exon	FALSE	canonical	3	125	junction_10	16.9960073525513	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCACTGTCTGCCGTGAA	NA	False	NA	-7	True	AATAAA	-10	NA	69906224	69901019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905618_69905685_69905942_69906022_69906088
ENSMUSG00000018574.15_6	chr11	-	2083	19	FSM	ENSMUSG00000018574.15	ENSMUST00000018718.8	2020	19	-8	-55	4	0	multi-exon	FALSE	canonical	3	15	junction_17	40.1080331229001	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCTGCCGTGAATGTCA	NA	False	NA	-2	True	AATAAA	-15	NA	69906221	69901014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905942_69906022_69906088
ENSMUSG00000018583.6_0	chr11	+	2320	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	50	4333	17	-4333	multi-exon	TRUE	canonical	3	6361	junction_7	586.595613027527	11783	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCAAAGTATGTGGGGG	NA	False	NA	32	True	AATAAA	-19	NA	55360560	55391331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
ENSMUSG00000018585.10_0	chr11	-	451	4	FSM	ENSMUSG00000018585.10	ENSMUST00000108857.2	541	4	89	1	47	-1	multi-exon	FALSE	canonical	3	2715	junction_3	136.123310110927	486	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGTGTCTGGTGTATGT	NA	False	NA	-8	True	AATAAA	-19	NA	55351976	55337467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_55337611_55341282_55341452_55345706_55345783_55351913
ENSMUSG00000018593.14_0	chr11	-	2075	10	FSM	ENSMUSG00000018593.14	ENSMUST00000108858.8	2115	10	31	9	31	-9	multi-exon	FALSE	canonical	3	134	junction_8	195.999685058956	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAACGGCTGTCCTGTCCC	3889	False	NA	-11	True	AATAAA	-13	NA	55310693	55285334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298103_55300753_55300824_55310613
ENSMUSG00000018593.14_18	chr11	-	2175	10	FSM	ENSMUSG00000018593.14	ENSMUST00000214685.2	1269	10	6	-912	6	-9	multi-exon	FALSE	canonical	3	36	junction_9	224.039568815559	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAACGGCTGTCCTGTCCC	579	False	NA	-11	True	AATAAA	-13	NA	55314003	55285334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55313826
ENSMUSG00000018593.14_2	chr11	-	2080	10	FSM	ENSMUSG00000018593.14	ENSMUST00000018737.13	2300	10	213	7	31	-7	multi-exon	FALSE	canonical	3	577	junction_9	66.8521493786341	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGGCTGTCCTGTCCCGG	3889	False	NA	-9	True	AATAAA	-15	NA	55310693	55285332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
ENSMUSG00000018599.6_0	chr11	+	2506	4	FSM	ENSMUSG00000018599.6	ENSMUST00000018743.5	2522	4	15	1	15	-1	multi-exon	FALSE	canonical	3	91	junction_2	26.4701089281224	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATGTGTAATTCTTGCT	NA	False	NA	13	True	AATAAA	-16	NA	60619238	60623776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60619394_60621108_60621262_60621455_60621619_60621741
ENSMUSG00000018599.6_1	chr11	+	2545	4	NIC	ENSMUSG00000018599.6	novel	2522	4	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	59.6713219785406	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTAATTCTTGCTG	NA	False	NA	14	True	AATAAA	-17	NA	60619247	60623777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_60619394_60621108_60621262_60621408_60621619_60621741
ENSMUSG00000018599.6_2	chr11	+	2708	3	FSM	ENSMUSG00000018599.6	ENSMUST00000154890.2	716	3	-38	-1954	7	-1	multi-exon	FALSE	canonical	3	114	junction_2	20.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATGTGTAATTCTTGCT	NA	False	NA	13	True	AATAAA	-16	NA	60619230	60623776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60619394_60621108_60621619_60621741
ENSMUSG00000018599.6_3	chr11	+	2499	2	ISM	ENSMUSG00000018599.6	ENSMUST00000154890.2	716	3	1886	-1954	1884	-1	3prime_fragment	FALSE	canonical	3	114	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATGTGTAATTCTTGCT	NA	False	NA	13	True	AATAAA	-16	NA	60621154	60623776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60621619_60621741
ENSMUSG00000018599.6_7	chr11	+	2816	2	ISM	ENSMUSG00000018599.6	ENSMUST00000018743.5	2522	4	21	2	21	-2	intron_retention	FALSE	canonical	3	155	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATATGTGTAATTCTTGC	NA	False	NA	12	True	AATAAA	-15	NA	60619244	60623775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60619394_60621108
ENSMUSG00000018599.6_9	chr11	+	1565	1	ISM	ENSMUSG00000018599.6	ENSMUST00000018743.5	2522	4	2989	0	2942	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTAATTCTTGCTG	NA	False	NA	14	True	AATAAA	-17	NA	60622212	60623777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60622200_60623800
ENSMUSG00000018604.19_10	chr5	+	4673	9	NIC	ENSMUSG00000018604.19	novel	4856	8	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	314.870608345714	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTTTTGAAGTTGTG	NA	False	NA	16	True	AATAAA	-10	NA	119809084	119822783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_119809123_119809297_119810470_119812090_119812359_119813307_119813368_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
ENSMUSG00000018604.19_11	chr5	+	4781	7	FSM	ENSMUSG00000018604.19	ENSMUST00000079719.11	4982	7	354	-153	5	-10	multi-exon	FALSE	canonical	3	458	junction_2	196.719272625288	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAAATGAGTTTTGAAGT	NA	False	NA	12	True	AATAAA	-6	NA	119809087	119822779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
ENSMUSG00000018604.19_12	chr5	+	4841	8	FSM	ENSMUSG00000018604.19	ENSMUST00000018748.9	4856	8	5	10	5	-10	multi-exon	FALSE	canonical	3	443	junction_2	231.190088764326	847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAAATGAGTTTTGAAGT	NA	False	NA	12	True	AATAAA	-6	NA	119809087	119822779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_119810470_119812090_119812359_119813307_119813368_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
ENSMUSG00000018604.19_14	chr5	+	4609	8	FSM	ENSMUSG00000018604.19	ENSMUST00000121021.8	4777	8	158	10	2	-10	multi-exon	FALSE	canonical	3	95	junction_1	319.496925985659	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAAATGAGTTTTGAAGT	NA	False	NA	12	True	AATAAA	-6	NA	119809084	119822779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_119809123_119809297_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
ENSMUSG00000018604.19_54	chr5	+	2781	2	ISM	ENSMUSG00000018604.19	ENSMUST00000018748.9	4856	8	9355	6	124	-6	3prime_fragment	FALSE	canonical	3	1076	junction_1	0	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTTTTGAAGTTGTG	NA	False	NA	16	True	AATAAA	-10	NA	119818437	119822783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_119819131_119820695
ENSMUSG00000018604.19_58	chr5	+	1341	1	ISM	ENSMUSG00000018604.19	ENSMUST00000121021.8	4777	8	12516	6	3129	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTTTTGAAGTTGTG	NA	False	NA	16	True	AATAAA	-10	NA	119821442	119822783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_119821400_119822800
ENSMUSG00000018648.16_0	chr11	-	1435	3	FSM	ENSMUSG00000018648.16	ENSMUST00000100705.11	1447	3	5	7	5	-3	multi-exon	FALSE	canonical	3	59	junction_2	13.5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATAAGCCCTTTATTAAT	NA	False	NA	-21	True	AATAAA	-8	NA	83959178	83938873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_83940137_83941657_83941747_83959095
ENSMUSG00000018648.16_2	chr11	-	1446	3	FSM	ENSMUSG00000018648.16	ENSMUST00000164891.8	1454	3	5	3	5	-3	multi-exon	FALSE	canonical	1	2	junction_2	42	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATAAGCCCTTTATTAAT	NA	False	NA	-21	True	AATAAA	-8	NA	83959400	83938873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_83940137_83941657_83941747_83959306
ENSMUSG00000018651.15_0	chr11	-	2141	16	FSM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	8	2	8	-2	multi-exon	FALSE	canonical	3	409	junction_10	48.5691259958423	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTGGGTGTGTCAGAT	NA	False	NA	-6	True	ATTAAA	-15	NA	84020418	83969747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
ENSMUSG00000018651.15_9	chr11	-	2082	15	ISM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	2504	6	2504	-6	3prime_fragment	FALSE	canonical	3	409	junction_10	50.0736702167875	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAATTTGTGGGTGTGTC	NA	False	NA	-10	True	ATTAAA	-11	NA	84017922	83969751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813
ENSMUSG00000018659.13_0	chr11	-	2000	7	FSM	ENSMUSG00000018659.13	ENSMUST00000018803.12	1994	7	-11	5	-11	-5	multi-exon	FALSE	canonical	3	181	junction_4	10.434983894999	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAATGTTTAACTTGAT	NA	False	NA	-7	True	AATAAA	-20	NA	96834823	96828655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_96829910_96830080_96830152_96830473_96830603_96830841_96830896_96831681_96831782_96833235_96833361_96834556
ENSMUSG00000018661.18_1	chr11	+	3017	14	FSM	ENSMUSG00000018661.18	ENSMUST00000018805.15	3935	14	371	547	212	0	multi-exon	FALSE	canonical	3	202	junction_2	35.2900073021332	550	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTGCCTCTGCTCCTGT	NA	False	NA	14	True	AATAAA	-22	NA	113540365	113553226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_113540702_113542670_113542913_113543050_113543233_113543367_113543539_113544729_113544887_113545793_113546005_113546685_113547475_113547828_113547976_113548200_113548363_113549304_113549433_113550094_113550204_113551768_113551879_113551965_113552045_113553032
ENSMUSG00000018666.14_0	chr11	+	2176	5	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	1	493	1	-2	5prime_fragment	FALSE	canonical	3	583	junction_4	77.1508263079534	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTGATTTCTGTCTTT	NA	False	NA	13	True	AATAAA	-14	NA	96679985	96698973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441
ENSMUSG00000018666.14_12	chr11	+	2352	5	FSM	ENSMUSG00000018666.14	ENSMUST00000134585.8	2377	5	23	2	1	-2	multi-exon	FALSE	canonical	3	66	junction_4	281.892155797213	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTGATTTCTGTCTTT	NA	False	NA	13	True	AATAAA	-14	NA	96679985	96698973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693825_96697441
ENSMUSG00000018666.14_28	chr11	+	1908	4	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	11685	494	11595	-3	internal_fragment	FALSE	canonical	3	583	junction_3	73.9564436378302	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTTGATTTCTGTCTT	NA	False	NA	12	True	AATAAA	-13	NA	96691669	96698972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96691774_96692254_96692433_96693553_96693649_96697441
ENSMUSG00000018666.14_37	chr11	+	949	1	ISM	ENSMUSG00000018666.14	ENSMUST00000134585.8	2377	5	18062	2	17950	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTGATTTCTGTCTTT	4416	False	NA	13	True	AATAAA	-14	NA	96698024	96698973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96698000_96699000
ENSMUSG00000018666.14_5	chr11	+	1157	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	canonical	3	188	junction_5	206.095705923243	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTGATTTCTGTCTTT	NA	False	NA	13	True	AATAAA	-14	NA	96679966	96698973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96698628
ENSMUSG00000018669.15_2	chr11	-	1777	14	FSM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	83	390	1	0	multi-exon	FALSE	canonical	3	831	junction_13	105.723262738262	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	-41	True	AATAAA	-15	NA	96807239	96798641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
ENSMUSG00000018669.15_9	chr11	-	1750	13	ISM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	297	390	-92	0	3prime_fragment	FALSE	canonical	3	982	junction_6	81.183776430735	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	-41	True	AATAAA	-15	NA	96807025	96798641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
ENSMUSG00000018672.16_0	chr11	+	921	9	FSM	ENSMUSG00000018672.16	ENSMUST00000018816.14	930	9	3	6	-2	-6	multi-exon	FALSE	canonical	3	213	junction_8	11.8420595759353	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAAAGACCTCCTTTCTTG	778	False	NA	5	True	AATAAA	-16	NA	96740704	96752023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96740823_96741498_96741568_96744260_96744343_96744883_96744976_96745409_96745466_96746081_96746160_96747497_96747550_96748378_96748418_96751688
ENSMUSG00000018672.16_3	chr11	+	912	9	NIC	ENSMUSG00000018672.16	novel	930	9	NA	NA	-1	-10	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	75.0273908316156	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCAAAGACCTCCTTT	779	False	NA	1	True	AATAAA	-12	NA	96740705	96752019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_96740823_96741498_96741568_96744260_96744343_96744883_96744976_96745409_96745466_96746085_96746160_96747497_96747550_96748378_96748418_96751688
ENSMUSG00000018672.16_4	chr11	+	965	10	NIC	ENSMUSG00000018672.16	novel	930	9	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	94.6820540441782	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGACCTCCTTTCTTGAC	780	False	NA	7	True	AATAAA	-18	NA	96740706	96752025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_96740823_96741498_96741568_96742936_96742981_96744260_96744343_96744883_96744976_96745409_96745466_96746081_96746160_96747497_96747550_96748378_96748418_96751688
ENSMUSG00000018677.10_0	chr11	-	1472	12	FSM	ENSMUSG00000018677.10	ENSMUST00000018821.9	1685	12	53	160	-2	0	multi-exon	TRUE	canonical	3	4398	junction_3	174.765959202208	3872	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7741	False	NA	95	True	NA	NA	NA	102298317	102293970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUSG00000018678.14_0	chr11	-	1360	3	ISM	ENSMUSG00000018678.14	ENSMUST00000107623.8	2907	7	12493	0	12493	0	3prime_fragment	FALSE	canonical	3	445	junction_2	23.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCGTTGTAACTGCTTG	NA	False	NA	-11	True	ATTAAA	-16	NA	96846998	96844298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_96845397_96846600_96846795_96846930
ENSMUSG00000018678.14_1	chr11	-	2879	7	FSM	ENSMUSG00000018678.14	ENSMUST00000107624.8	3055	7	44	132	44	0	multi-exon	FALSE	canonical	3	58	junction_6	154.880599172395	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCGTTGTAACTGCTTG	NA	False	NA	-11	True	ATTAAA	-16	NA	96868493	96844298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854190_96854271_96868446
ENSMUSG00000018678.14_2	chr11	-	2876	7	NIC	ENSMUSG00000018678.14	novel	3055	7	NA	NA	45	1	combination_of_known_splicesites	FALSE	canonical	3	301	junction_6	68.1854089963535	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTGTAACTGCTTGA	NA	False	NA	-10	True	ATTAAA	-17	NA	96868492	96844297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854190_96854268_96868446
ENSMUSG00000018678.14_47	chr11	-	1389	3	NIC	ENSMUSG00000018678.14	novel	3055	7	NA	NA	45	-6525	combination_of_known_splicesites	FALSE	canonical	3	301	junction_2	103	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAGTATATATAACAGCAA	NA	False	NA	-18	True	AATAAA	-14	NA	96868492	96851569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_96852836_96854190_96854268_96868446
ENSMUSG00000018697.15_0	chr11	-	1784	13	FSM	ENSMUSG00000018697.15	ENSMUST00000018841.3	1822	13	29	9	29	-9	multi-exon	TRUE	canonical	3	481	junction_8	26.3136793744665	495	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGTTGTCACTGTCTTC	NA	False	NA	-9	True	AATAAA	-35	NA	84404319	84313689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_84313846_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
ENSMUSG00000018707.14_0	chr12	+	14320	77	FSM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	-1	23	-1	-23	multi-exon	TRUE	canonical	3	133	junction_1	148.379081411613	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCCGCCTCTTGCCGCTC	6470	False	NA	16	True	AATAAA	-17	NA	110567884	110633356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110568289_110578778_110578867_110580478_110580653_110580786_110581043_110581324_110581512_110582773_110583046_110583131_110583360_110584053_110585131_110585622_110585803_110586732_110586883_110587960_110588108_110590942_110591084_110591860_110592038_110592164_110592276_110592355_110592476_110593292_110593533_110594373_110594530_110594666_110594781_110595157_110595269_110595341_110595552_110595710_110595858_110596010_110596178_110596256_110596431_110596931_110597098_110597177_110597367_110598042_110598238_110599073_110599357_110599586_110599688_110600652_110600813_110601934_110602179_110602328_110602513_110602759_110602973_110603539_110603779_110603929_110604087_110605172_110605401_110606167_110606399_110606579_110606721_110606932_110607167_110607252_110607460_110607535_110607658_110608444_110608611_110609556_110609721_110612627_110612758_110614694_110614829_110615433_110615549_110615648_110615811_110615895_110616111_110616207_110616413_110617924_110618099_110618184_110618305_110618507_110618629_110620583_110620780_110621217_110621336_110621849_110622066_110622718_110622932_110623026_110623155_110623476_110623631_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
ENSMUSG00000018707.14_100	chr12	+	4355	27	ISM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	50677	23	-2033	-23	3prime_fragment	FALSE	canonical	3	354	junction_7	90.9071068234267	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCCGCCTCTTGCCGCTC	3094	False	NA	16	True	AATAAA	-17	NA	110618562	110633356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110618629_110620583_110620780_110621217_110621336_110621849_110622066_110622718_110622932_110623026_110623155_110623476_110623631_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
ENSMUSG00000018707.14_102	chr12	+	4255	26	ISM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	52733	22	23	-22	3prime_fragment	FALSE	canonical	3	354	junction_6	90.1456066594485	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCGCCTCTTGCCGCTCT	5150	False	NA	17	True	AATAAA	-18	NA	110620618	110633357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110620780_110621217_110621336_110621849_110622066_110622718_110622932_110623026_110623155_110623476_110623631_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
ENSMUSG00000018707.14_106	chr12	+	3874	24	ISM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	54061	27	-892	-27	3prime_fragment	FALSE	canonical	3	354	junction_4	89.1785872049957	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGGCTCCCGCCTCTTGCC	6478	False	NA	12	True	AATAAA	-13	NA	110621946	110633352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110622066_110622718_110622932_110623026_110623155_110623476_110623631_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
ENSMUSG00000018707.14_109	chr12	+	3703	23	ISM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	54885	27	-68	-27	3prime_fragment	FALSE	canonical	3	354	junction_3	88.6082472888574	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGGCTCCCGCCTCTTGCC	7302	False	NA	12	True	AATAAA	-13	NA	110622770	110633352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110622932_110623026_110623155_110623476_110623631_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
ENSMUSG00000018707.14_112	chr12	+	3356	21	ISM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	55653	23	700	-23	3prime_fragment	FALSE	canonical	3	354	junction_1	86.661107193481	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCCGCCTCTTGCCGCTC	8070	False	NA	16	True	AATAAA	-17	NA	110623538	110633356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110623631_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
ENSMUSG00000018707.14_123	chr12	+	2859	18	ISM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	56996	23	-644	-23	3prime_fragment	FALSE	canonical	3	418	junction_3	77.9938778539634	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCCGCCTCTTGCCGCTC	9413	False	NA	16	True	AATAAA	-17	NA	110624881	110633356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
ENSMUSG00000018707.14_145	chr12	+	1090	6	ISM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	63161	22	1424	-22	3prime_fragment	FALSE	canonical	3	584	junction_1	43.3192797724062	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCGCCTCTTGCCGCTCT	2265	False	NA	17	True	AATAAA	-18	NA	110631046	110633357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
ENSMUSG00000018707.14_63	chr12	+	6489	40	ISM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	39116	23	44	-23	3prime_fragment	FALSE	canonical	3	255	junction_2	112.265851004547	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCCGCCTCTTGCCGCTC	5509	False	NA	16	True	AATAAA	-17	NA	110607001	110633356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110607167_110607252_110607460_110607535_110607658_110608444_110608611_110609556_110609721_110612627_110612758_110614694_110614829_110615433_110615549_110615648_110615811_110615895_110616111_110616207_110616413_110617924_110618099_110618184_110618305_110618507_110618629_110620583_110620780_110621217_110621336_110621849_110622066_110622718_110622932_110623026_110623155_110623476_110623631_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
ENSMUSG00000018707.14_88	chr12	+	5036	31	ISM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	48094	27	-4616	-27	3prime_fragment	FALSE	canonical	3	324	junction_3	97.7563240352709	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGGCTCCCGCCTCTTGCC	511	False	NA	12	True	AATAAA	-13	NA	110615979	110633352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110616111_110616207_110616413_110617924_110618099_110618184_110618305_110618507_110618629_110620583_110620780_110621217_110621336_110621849_110622066_110622718_110622932_110623026_110623155_110623476_110623631_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
ENSMUSG00000018727.20_0	chr11	-	1453	8	FSM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	-79	1	-79	-1	multi-exon	FALSE	canonical	3	47	junction_7	53.4469028903587	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGCATTGATTCCTTTT	NA	False	NA	-10	True	AATATA	-15	NA	113600431	113588998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
ENSMUSG00000018727.20_1	chr11	-	1289	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	87	junction_7	41.9649999939211	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600425	113588997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ENSMUSG00000018727.20_2	chr11	-	1270	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_7	55.2692851188707	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600841	113588997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600647
ENSMUSG00000018727.20_3	chr11	-	1243	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-67	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	66.4646940529749	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600419	113588997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ENSMUSG00000018727.20_4	chr11	-	1077	7	ISM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	671	0	112	0	3prime_fragment	FALSE	canonical	3	130	junction_2	29.1514245887839	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113599681	113588997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629
ENSMUSG00000018727.20_8	chr11	-	1421	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-86	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	74.0855361502275	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600438	113588997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
ENSMUSG00000018733.11_1	chr11	-	2373	4	FSM	ENSMUSG00000018733.11	ENSMUST00000108146.8	2389	4	15	1	11	0	multi-exon	FALSE	canonical	3	23	junction_3	16.4991582276861	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTGACTTCTTGAAGTT	2441	False	NA	-8	True	AATAAA	-15	NA	83189753	83185901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189537
ENSMUSG00000018733.11_2	chr11	-	2527	3	FSM	ENSMUSG00000018733.11	ENSMUST00000176518.2	2501	3	-29	3	12	-3	multi-exon	FALSE	canonical	3	48	junction_2	7.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACCATTGACTTCTTGAA	2442	False	NA	-11	True	AATAAA	-12	NA	83189752	83185904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_83187267_83188313_83188868_83189141
ENSMUSG00000018733.11_3	chr11	-	2249	4	FSM	ENSMUSG00000018733.11	ENSMUST00000018877.9	2729	4	41	439	2	-5	multi-exon	FALSE	canonical	3	9	junction_3	22.7596133534821	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCACCATTGACTTCTTG	2432	False	NA	-13	True	AATAAA	-10	NA	83189762	83185906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189665
ENSMUSG00000018733.11_4	chr11	-	2239	4	NIC	ENSMUSG00000018733.11	novel	2729	4	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	26.8700576850888	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTGACTTCTTGAAGTT	2441	False	NA	-8	True	AATAAA	-15	NA	83189753	83185901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_83187267_83188313_83188868_83189141_83189374_83189665
ENSMUSG00000018733.11_5	chr11	-	1961	2	ISM	ENSMUSG00000018733.11	ENSMUST00000175741.8	2337	4	812	1	812	0	3prime_fragment	FALSE	canonical	3	63	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTGACTTCTTGAAGTT	3285	False	NA	-8	True	AATAAA	-15	NA	83188909	83185901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_83187267_83188313
ENSMUSG00000018733.11_6	chr11	-	2214	4	NIC	ENSMUSG00000018733.11	novel	2729	4	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	26.8700576850888	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTGACTTCTTGAAGTT	2400	False	NA	-8	True	AATAAA	-15	NA	83189794	83185901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_83187267_83188313_83188868_83189141_83189380_83189737
ENSMUSG00000018733.11_7	chr11	-	2362	4	NIC	ENSMUSG00000018733.11	novel	2389	4	NA	NA	11	-5	combination_of_known_splicesites	FALSE	canonical	3	12	junction_3	21.4009345590327	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCACCATTGACTTCTTG	2441	False	NA	-13	True	AATAAA	-10	NA	83189753	83185906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_83187267_83188313_83188868_83189141_83189374_83189537
ENSMUSG00000018736.15_0	chr11	-	1100	1	ISM	ENSMUSG00000018736.15	ENSMUST00000018880.14	2382	9	30587	15	17372	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGGTC	NA	False	NA	NA	False	AATAAA	-9	NA	68713374	68712274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_68712300_68713400
ENSMUSG00000018736.15_1	chr11	-	2317	9	FSM	ENSMUSG00000018736.15	ENSMUST00000018880.14	2382	9	48	17	-46	-17	multi-exon	FALSE	canonical	3	185	junction_5	15.9530561335438	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAAAAGGG	NA	False	NA	NA	False	AATAAA	-7	NA	68743913	68712276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_68713492_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
ENSMUSG00000018736.15_2	chr11	-	2349	10	NIC	ENSMUSG00000018736.15	novel	2382	9	NA	NA	-43	-17	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	74.7099742130432	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAAAAGGG	NA	False	NA	NA	False	AATAAA	-7	NA	68743910	68712276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_68713492_68716995_68717031_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
ENSMUSG00000018740.15_1	chr11	+	1807	5	FSM	ENSMUSG00000018740.15	ENSMUST00000102606.10	1828	5	20	1	3	-1	multi-exon	FALSE	canonical	3	33	junction_2	4.96865172858795	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGAAGTGTCTTATGTTT	5578	False	NA	5	True	CATAAA	-17	NA	68858976	68863341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68859864_68861549_68861616_68862009_68862163_68862494_68862630_68862775
ENSMUSG00000018740.15_2	chr11	+	2202	4	NIC	ENSMUSG00000018740.15	novel	1828	5	NA	NA	2	-1	intron_retention	FALSE	canonical	3	37	junction_2	3.55902608401044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGAAGTGTCTTATGTTT	5577	False	NA	5	True	CATAAA	-17	NA	68858975	68863341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_68859864_68861549_68862163_68862494_68862630_68862775
ENSMUSG00000018750.15_1	chr11	+	1849	1	ISM	ENSMUSG00000018750.15	ENSMUST00000108639.8	7811	4	12444	3809	2960	5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGTGGCTTCTTTGGGGC	2683	False	NA	NA	False	AATAGA	-21	NA	69669191	69671040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_69669200_69671000
ENSMUSG00000018752.20_1	chr11	-	3144	22	Fusion	ENSMUSG00000005204.13_ENSMUSG00000097328.8	novel	2219	11	NA	NA	-137	0	multi-exon	TRUE	canonical	3	10	junction_12	462.316179073485	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATGCAAGTGGTGGTC	5603	False	NA	-11	True	AATAAA	-11	NA	69586484	69563946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69574679_69574819_69575043_69575160_69575310_69575359_69575485_69575565_69575854_69575957_69577782_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586268_69586421
ENSMUSG00000018752.20_3	chr11	-	1731	13	NIC	ENSMUSG00000018752.20	novel	2235	13	NA	NA	29	-1	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	8.86119818835655	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGCCCCAAATTCTTTT	5192	False	NA	-4	True	ATTAAA	-29	NA	69586895	69573874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69574171_69574679_69574819_69575043_69575163_69575310_69575359_69575485_69575565_69575854_69575957_69577782_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586268_69586421
ENSMUSG00000018752.20_4	chr11	-	1722	13	FSM	ENSMUSG00000018752.20	ENSMUST00000174159.8	1470	13	-253	1	35	-1	multi-exon	FALSE	canonical	3	10	junction_3	8.53871900358726	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGCCCCAAATTCTTTT	5198	False	NA	-4	True	ATTAAA	-29	NA	69586889	69573874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69574171_69574679_69574819_69575043_69575160_69575310_69575359_69575485_69575565_69575854_69575957_69577782_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586268_69586421
ENSMUSG00000018761.15_0	chr11	-	1260	7	FSM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	54	7	-1	-7	multi-exon	FALSE	canonical	3	557	junction_4	37.1427426738163	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAAATTGTGTTTAGTGT	6815	False	NA	-11	True	AATAAA	-26	NA	69553414	69547529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
ENSMUSG00000018761.15_10	chr11	-	1295	7	FSM	ENSMUSG00000018761.15	ENSMUST00000148242.8	971	7	-1	-323	-1	-7	multi-exon	FALSE	canonical	3	35	junction_4	228.446018423026	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAAATTGTGTTTAGTGT	6815	False	NA	-11	True	AATAAA	-26	NA	69553414	69547529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548883_69549391_69549525_69549636_69549703_69553294
ENSMUSG00000018761.15_6	chr11	-	1169	6	FSM	ENSMUSG00000018761.15	ENSMUST00000125389.2	646	6	-70	-453	-1	-12	multi-exon	FALSE	canonical	3	53	junction_3	239.282761602252	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTACAAAATTGTGTTT	6815	False	NA	-16	True	AATAAA	-21	NA	69553414	69547534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69549391_69549525_69549636_69549703_69553294
ENSMUSG00000018761.15_7	chr11	-	1805	6	NIC	ENSMUSG00000018761.15	novel	1321	7	NA	NA	-1	-6	intron_retention	FALSE	canonical	3	628	junction_2	17.9844377170931	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAATTGTGTTTAGTGTG	6815	False	NA	-10	True	AATAAA	-27	NA	69553414	69547528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69549525_69549636_69549703_69553294
ENSMUSG00000018765.6_0	chr11	+	2978	17	FSM	ENSMUSG00000018765.6	ENSMUST00000018909.4	2951	17	-27	0	-27	0	multi-exon	FALSE	canonical	3	970	junction_6	95.5459436279217	2006	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523788	69544123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69524225_69530215_69530269_69531059_69531154_69532107_69532180_69532266_69532416_69532872_69532967_69534663_69534781_69539630_69539802_69539975_69540055_69540553_69540664_69541288_69541376_69541669_69541899_69542064_69542263_69542348_69542550_69542803_69542900_69543035_69543134_69543429
ENSMUSG00000018770.10_1	chr2	-	694	5	FSM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	27	2	-7	-2	multi-exon	FALSE	canonical	3	880	junction_4	1495.60896878161	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTGCTGTGATTTGTA	NA	False	NA	-23	True	ATTAAA	-13	NA	73741642	73738792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741585
ENSMUSG00000018770.10_2	chr2	-	684	5	FSM	ENSMUSG00000018770.10	ENSMUST00000018914.3	714	5	28	2	-7	-2	multi-exon	FALSE	canonical	3	2058	junction_4	989.165146727279	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTGCTGTGATTTGTA	NA	False	NA	-23	True	ATTAAA	-13	NA	73741642	73738792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741595
ENSMUSG00000018770.10_3	chr2	-	639	4	ISM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	263	2	220	-2	3prime_fragment	FALSE	canonical	3	4118	junction_1	167.551650411315	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTGCTGTGATTTGTA	NA	False	NA	-23	True	ATTAAA	-13	NA	73741406	73738792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298
ENSMUSG00000018770.10_5	chr2	-	203	1	ISM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	2673	3	1807	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTTGCTGTGATTTGT	NA	False	NA	-24	True	ATTAAA	-12	NA	73738996	73738793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_73738800_73739000
ENSMUSG00000018770.10_7	chr2	-	416	2	ISM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	1985	2	1119	-2	3prime_fragment	FALSE	canonical	3	4118	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTGCTGTGATTTGTA	NA	False	NA	-23	True	ATTAAA	-13	NA	73739684	73738792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_73739052_73739527
ENSMUSG00000018774.14_0	chr11	-	1202	6	FSM	ENSMUSG00000018774.14	ENSMUST00000018918.12	1230	6	24	4	24	-4	multi-exon	FALSE	canonical	3	102	junction_5	17.4653943556966	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTCCTTTCTTTCCTCA	3274	False	NA	-5	True	AATAAA	-15	NA	69556955	69555042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556328_69556763_69556845
ENSMUSG00000018774.14_2	chr11	-	1083	5	ISM	ENSMUSG00000018774.14	ENSMUST00000018918.12	1230	6	229	1	138	-1	3prime_fragment	FALSE	canonical	3	111	junction_4	15.7698287879102	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTTTCTTTCCTCATTA	3479	False	NA	-2	True	AATAAA	-18	NA	69556750	69555039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556328
ENSMUSG00000018774.14_3	chr11	-	762	5	FSM	ENSMUSG00000018774.14	ENSMUST00000154124.2	612	5	-59	-91	32	-2	multi-exon	FALSE	canonical	3	24	junction_4	48.9540600971972	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCCTTTCTTTCCTCATT	3282	False	NA	-3	True	AATAAA	-17	NA	69556947	69555040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556845
ENSMUSG00000018774.14_4	chr11	-	1548	3	ISM	ENSMUSG00000018774.14	ENSMUST00000018918.12	1230	6	32	2	32	-2	intron_retention	FALSE	canonical	3	128	junction_2	12.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCCTTTCTTTCCTCATT	3282	False	NA	-3	True	AATAAA	-17	NA	69556947	69555040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69555331_69555576_69555748_69555860
ENSMUSG00000018774.14_5	chr11	-	1541	4	NIC	ENSMUSG00000018774.14	novel	1230	6	NA	NA	-46	-4	intron_retention	FALSE	canonical	3	102	junction_3	20.8219969156552	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTCCTTTCTTTCCTCA	3204	False	NA	-5	True	AATAAA	-15	NA	69557025	69555042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69555331_69555576_69555748_69555860_69556763_69556845
ENSMUSG00000018776.11_1	chr11	-	1549	2	FSM	ENSMUSG00000018776.11	ENSMUST00000231829.2	1494	2	-55	0	-55	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACTGGTGTGGAGAGA	9905	False	NA	NA	False	AATAAA	-17	NA	69652725	69650715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69651981_69652441
ENSMUSG00000018796.14_0	chr8	+	3832	22	NNC	ENSMUSG00000018796.14	novel	3897	21	NA	NA	-4	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_21	91.7312944718842	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAGTGGAGAATGTCTTT	2220	False	NA	7	True	AATAAA	-16	NA	46924087	46989078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_46924268_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376_46988383_46988423
ENSMUSG00000018796.14_2	chr8	+	3874	21	FSM	ENSMUSG00000018796.14	ENSMUST00000034046.13	3897	21	13	10	-5	-10	multi-exon	FALSE	canonical	3	339	junction_9	34.1571368823559	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAGTGGAGAATGTCTTT	2219	False	NA	7	True	AATAAA	-16	NA	46924086	46989078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_46924268_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
ENSMUSG00000018800.15_0	chr11	-	1801	1	ISM	ENSMUSG00000018800.15	ENSMUST00000043961.12	8231	39	66504	5	66448	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTATGACAGACTTCAGTT	6127	False	NA	NA	False	AATAAA	-16	NA	110162000	110160199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_110160200_110162000
ENSMUSG00000018800.15_2	chr11	-	5276	39	FSM	ENSMUSG00000018800.15	ENSMUST00000043961.12	8231	39	-1	2956	-1	-2956	multi-exon	FALSE	canonical	1	7	junction_11	4.33987183389395	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATTTCTTAAAGTCCTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	110228505	110163150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_110163393_110164151_110164208_110165145_110165226_110166089_110166240_110167279_110167400_110168213_110168309_110168387_110168464_110168996_110169173_110169934_110170027_110170117_110170236_110170451_110170579_110176519_110176612_110177589_110177665_110178407_110178543_110178888_110179003_110180616_110180788_110182911_110183026_110184065_110184204_110184612_110184741_110187293_110187464_110188861_110189064_110190716_110190837_110192238_110192379_110192556_110192648_110193818_110193958_110194918_110195039_110195675_110195852_110197070_110197182_110200215_110200275_110200962_110201132_110202136_110202285_110204154_110204344_110205349_110205492_110208527_110208758_110210619_110210709_110217385_110217548_110218557_110218763_110219962_110220083_110228310
ENSMUSG00000018800.15_3	chr11	-	8105	39	NIC	ENSMUSG00000018800.15	novel	8231	39	NA	NA	6	-11	combination_of_known_junctions	FALSE	canonical	1	7	junction_11	4.51559317448456	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAAATCTATGACAGACT	NA	False	NA	NA	False	AATAAA	-10	NA	110228498	110160205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_110163393_110164151_110164208_110165145_110165226_110166089_110166240_110167279_110167400_110168213_110168309_110168387_110168464_110168996_110169173_110169934_110170027_110170117_110170236_110170451_110170579_110176519_110176612_110177589_110177665_110178407_110178543_110178888_110179003_110180616_110180788_110182911_110183026_110184065_110184204_110184612_110184741_110187293_110187464_110188861_110189064_110190716_110190837_110192238_110192379_110192556_110192648_110193818_110193958_110194918_110195039_110195675_110195852_110197070_110197182_110200215_110200275_110200962_110201132_110202136_110202285_110204154_110204344_110205349_110205492_110208527_110208758_110210619_110210709_110217385_110217548_110218557_110218763_110219962_110220083_110228419
ENSMUSG00000018809.3_0	chr11	+	3416	11	FSM	ENSMUSG00000018809.3	ENSMUST00000044530.3	3517	11	82	19	20	-19	multi-exon	FALSE	canonical	3	60	junction_7	9.20923449587424	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTCTTCCTGGGATGGCA	NA	False	NA	16	True	AATAAA	-18	NA	75239340	75296512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75280897_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
ENSMUSG00000018809.3_17	chr11	+	2230	7	ISM	ENSMUSG00000018809.3	ENSMUST00000044530.3	3517	11	41837	389	2799	-389	3prime_fragment	FALSE	canonical	3	60	junction_3	10.7082522694727	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAATAAAAA	9016	False	NA	NA	False	NA	NA	NA	75281095	75296142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
ENSMUSG00000018809.3_2	chr11	+	3311	10	NIC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	-14	-13	intron_retention	TRUE	canonical	1	2	junction_2	24.9701055832671	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGGGATGGCAACTCTG	NA	False	NA	22	True	AATAAA	-24	NA	75239306	75296518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_75239578_75240494_75240641_75278236_75278327_75280897_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
ENSMUSG00000018809.3_20	chr11	+	1113	5	ISM	ENSMUSG00000018809.3	ENSMUST00000044530.3	3517	11	51873	341	697	-341	3prime_fragment	FALSE	canonical	3	60	junction_1	7.1894019222742	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGTTGTCACTGATCTG	NA	False	NA	NA	False	NA	NA	NA	75291131	75296190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
ENSMUSG00000018809.3_23	chr11	+	1316	1	NIC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	4762	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTCTTCCTGGGATGGCA	NA	False	NA	16	True	AATAAA	-18	NA	75295196	75296512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_75295200_75296500
ENSMUSG00000018809.3_3	chr11	+	4708	10	NIC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	28	-391	intron_retention	FALSE	canonical	3	66	junction_2	8.08290376865476	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAAATAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	75239348	75296140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75280897_75282054_75290426_75290610_75291107_75293077_75293934_75294052_75294242_75294367_75295591
ENSMUSG00000018809.3_5	chr11	+	3203	11	NIC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	47	-19	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	24.4040980165217	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTCTTCCTGGGATGGCA	NA	False	NA	16	True	AATAAA	-18	NA	75239367	75296512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75281083_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
ENSMUSG00000018809.3_9	chr11	+	3323	12	NIC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	1	-14	combination_of_known_junctions	FALSE	canonical	3	12	junction_5	20.2051462227893	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGGGATGGCAACTCT	NA	False	NA	21	True	AATAAA	-23	NA	75239321	75296517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75280897_75280967_75281083_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
ENSMUSG00000018819.11_0	chr7	+	1439	11	FSM	ENSMUSG00000018819.11	ENSMUST00000018963.11	1695	11	-13	269	-13	-1	multi-exon	FALSE	canonical	1	1	junction_5	3.11287648325468	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCATTTGGATCTCCTGT	NA	False	NA	NA	False	AATAAA	-18	NA	142014569	142048335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_142014704_142038215_142038363_142040083_142040243_142042155_142042253_142042584_142042678_142042865_142042910_142043061_142043144_142043636_142043772_142044081_142044160_142044295_142044403_142047972
ENSMUSG00000018820.14_1	chr19	+	4188	11	NIC	ENSMUSG00000018820.14	novel	2573	12	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	55	junction_1	34.8007183833897	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGGTTTTGTCAGGTCTC	NA	False	NA	5	True	AATAAA	-12	NA	42159030	42180154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_42159108_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42174389_42177635_42177683_42177960_42178043_42178821
ENSMUSG00000018820.14_2	chr19	+	2577	12	FSM	ENSMUSG00000018820.14	ENSMUST00000099443.11	2573	12	-4	0	-4	0	multi-exon	FALSE	canonical	3	55	junction_1	33.3877792261314	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTCAGGTCTCCT	NA	False	NA	7	True	AATAAA	-14	NA	42159028	42180156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_42159108_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
ENSMUSG00000018820.14_3	chr19	+	4302	11	NIC	ENSMUSG00000018820.14	novel	2573	12	NA	NA	3	0	intron_retention	FALSE	canonical	3	125	junction_1	17.592327873252	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTCAGGTCTCCT	NA	False	NA	7	True	AATAAA	-14	NA	42159035	42180156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42174389_42177635_42177683_42177960_42178043_42178821
ENSMUSG00000018820.14_44	chr19	+	853	1	ISM	ENSMUSG00000018820.14	ENSMUST00000169536.8	5611	13	20300	2871	5258	2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTGTCAGGTCTCCTAG	2111	False	NA	9	True	AATAAA	-16	NA	42179305	42180158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_42179300_42180200
ENSMUSG00000018820.14_45	chr19	+	2473	1	Genic_Genomic	ENSMUSG00000018820.14	novel	NA	NA	NA	NA	6515	6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTTCAGTTTCATAAAT	3368	False	NA	NA	False	ATTAAA	-17	NA	42180562	42183035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_42180600_42183000
ENSMUSG00000018820.14_7	chr19	+	2671	12	NIC	ENSMUSG00000018820.14	novel	2573	12	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	125	junction_1	17.7223769463382	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTCAGGTCTCCT	NA	False	NA	7	True	AATAAA	-14	NA	42159051	42180156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
ENSMUSG00000018821.4_0	chr19	-	865	3	FSM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	46	133	-24	-133	multi-exon	FALSE	canonical	3	851	junction_1	12	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCAGTGTCTCACCATC	NA	False	NA	-3	True	AATAAA	-15	NA	42117452	42111844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_42112288_42113186_42113466_42117309
ENSMUSG00000018821.4_2	chr19	-	837	2	ISM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	4046	5	3976	-5	3prime_fragment	FALSE	canonical	3	851	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGATTTGTCAGAGTGT	NA	False	NA	-10	True	AATAAA	-10	NA	42113452	42111716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_42112288_42113186
ENSMUSG00000018822.8_0	chr19	-	1795	3	FSM	ENSMUSG00000018822.8	ENSMUST00000018966.8	1900	3	95	10	95	-10	multi-exon	FALSE	canonical	2	12	junction_1	0.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTAATTTCTTTATC	NA	False	NA	-8	True	AATAAA	-16	NA	42190596	42186419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_42187471_42188219_42188298_42189930
ENSMUSG00000018841.18_0	chr11	-	2229	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	7	1190	7	848	multi-exon	TRUE	canonical	3	107	junction_4	12.9099444873581	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAACACTGTGGCCATCCA	NA	False	NA	-15	True	AATAAA	-18	NA	82781433	82768714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
ENSMUSG00000018846.9_0	chr11	+	7261	7	FSM	ENSMUSG00000018846.9	ENSMUST00000018990.8	7376	7	109	6	109	-6	multi-exon	FALSE	canonical	3	60	junction_4	14.5191444498481	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATGTGTCTCCTGCTT	NA	False	NA	9	True	AATAAA	-11	NA	35660419	35682106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_35660775_35666912_35667266_35668393_35668648_35669402_35669580_35672410_35672535_35674274_35674401_35676234
ENSMUSG00000018846.9_1	chr11	+	7211	8	NNC	ENSMUSG00000018846.9	novel	7376	7	NA	NA	120	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	31.3173356178983	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATGTGTCTCCTGCTT	NA	False	NA	9	True	AATAAA	-11	NA	35660430	35682106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_35660775_35666912_35667266_35668393_35668648_35669402_35669580_35672410_35672535_35674274_35674401_35676234_35678873_35678911
ENSMUSG00000018846.9_11	chr11	+	2918	1	ISM	ENSMUSG00000018846.9	ENSMUST00000018990.8	7376	7	18880	4	18880	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATGTGTCTCCTGCTTGT	NA	False	NA	11	True	AATAAA	-13	NA	35679190	35682108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_35679200_35682100
ENSMUSG00000018846.9_12	chr11	+	4499	2	NNC	ENSMUSG00000018846.9	novel	7376	7	NA	NA	17258	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATGTGTCTCCTGCTT	NA	False	NA	9	True	AATAAA	-11	NA	35677568	35682106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_35678873_35678911
ENSMUSG00000018846.9_9	chr11	+	6738	6	ISM	ENSMUSG00000018846.9	ENSMUST00000018990.8	7376	7	6773	3	6773	-3	3prime_fragment	FALSE	canonical	3	60	junction_3	15.6460857724864	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTGTCTCCTGCTTGTT	NA	False	NA	12	True	AATAAA	-14	NA	35667083	35682109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_35667266_35668393_35668648_35669402_35669580_35672410_35672535_35674274_35674401_35676234
ENSMUSG00000018848.5_0	chr11	-	2100	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	4	5	4	-5	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	1161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTATGCCAGGTGTGTTTC	NA	False	NA	-6	True	AGTAAA	-12	NA	35725329	35699212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
ENSMUSG00000018849.7_0	chr11	-	4523	23	FSM	ENSMUSG00000018849.7	ENSMUST00000018993.7	4531	23	1	7	1	-7	multi-exon	FALSE	canonical	3	205	junction_16	29.6517319327484	534	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGAGCTTCTTGTCAT	8118	False	NA	NA	False	AATAAA	-11	NA	35871353	35729233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_35730072_35731136_35731259_35732580_35732815_35734981_35735075_35743020_35743186_35744186_35744305_35750922_35751015_35752635_35752777_35758061_35758255_35759923_35760011_35761300_35761382_35761742_35761852_35766440_35766980_35767355_35767446_35774074_35774318_35778889_35778964_35780086_35780234_35782275_35782406_35788202_35788283_35789445_35789523_35801002_35801207_35806002_35806113_35870797
ENSMUSG00000018858.16_0	chr11	+	830	6	FSM	ENSMUSG00000018858.16	ENSMUST00000153983.8	2596	6	7	1759	2	-4	multi-exon	FALSE	canonical	3	944	junction_3	61.9825781974258	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGCCTGTTTCCAGTGAG	NA	False	NA	12	True	AATAAA	-12	NA	115294584	115301741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115294787_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
ENSMUSG00000018858.16_1	chr11	+	744	6	FSM	ENSMUSG00000018858.16	ENSMUST00000103036.5	749	6	1	4	1	-4	multi-exon	FALSE	canonical	3	165	junction_1	353.082766501	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGCCTGTTTCCAGTGAG	NA	False	NA	12	True	AATAAA	-12	NA	115294583	115301741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115294700_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
ENSMUSG00000018858.16_2	chr11	+	770	5	FSM	ENSMUSG00000018858.16	ENSMUST00000106539.10	2522	5	5	1747	2	-4	multi-exon	FALSE	canonical	3	79	junction_2	428.298377302553	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGCCTGTTTCCAGTGAG	NA	False	NA	12	True	AATAAA	-12	NA	115294584	115301741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115294787_115297376_115297414_115300885_115300969_115301057_115301228_115301463
ENSMUSG00000018861.9_0	chr11	-	1860	12	FSM	ENSMUSG00000018861.9	ENSMUST00000021078.3	1948	12	84	4	-52	-4	multi-exon	FALSE	canonical	3	83	junction_7	15.1766458254911	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACCCATGGCTGATAGCT	NA	False	NA	-4	True	AATAAA	-13	NA	115167792	115158853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167634
ENSMUSG00000018861.9_17	chr11	-	1805	12	NIC	ENSMUSG00000018861.9	novel	1948	12	NA	NA	-22	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	34.102664639837	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGACCCATGGCTGATAGC	NA	False	NA	-5	True	AATAAA	-12	NA	115167762	115158854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162802_115163012_115163109_115166904_115167009_115167634
ENSMUSG00000018865.10_0	chr15	-	4852	6	NIC	ENSMUSG00000018865.10	novel	2383	7	NA	NA	-10	0	intron_retention	FALSE	canonical	3	68	junction_1	7.23878442834154	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGTCTGTGTGC	NA	False	NA	-1	True	AATAAA	-17	NA	83989820	83960297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
ENSMUSG00000018865.10_1	chr15	-	2382	8	FSM	ENSMUSG00000018865.10	ENSMUST00000229826.2	1319	8	-17	-1046	-17	-2	multi-exon	FALSE	canonical	3	60	junction_2	10.0285307284481	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTTTTGTCTGTGT	NA	False	NA	-3	True	AATAAA	-15	NA	83989827	83960299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83961784_83962969_83963099_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
ENSMUSG00000018865.10_2	chr15	-	1150	1	ISM	ENSMUSG00000018865.10	ENSMUST00000082365.6	2383	7	28508	0	28363	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGTCTGTGTGC	NA	False	NA	-1	True	AATAAA	-17	NA	83961447	83960297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_83960300_83961400
ENSMUSG00000018865.10_4	chr15	-	2246	7	FSM	ENSMUSG00000018865.10	ENSMUST00000082365.6	2383	7	135	2	-10	-2	multi-exon	FALSE	canonical	1	1	junction_1	29.8105126870818	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTTTTGTCTGTGT	NA	False	NA	-3	True	AATAAA	-15	NA	83989820	83960299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83961784_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
ENSMUSG00000018865.10_6	chr15	-	2601	7	NIC	ENSMUSG00000018865.10	novel	1319	8	NA	NA	4	-3	intron_retention	FALSE	canonical	3	63	junction_1	8.90068661521246	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACAAGTGCATTTCCAG	NA	False	NA	NA	False	AATAAA	-13	NA	83989806	83961348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_83961784_83962969_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
ENSMUSG00000018882.13_1	chr11	+	1476	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	141	814	-51	-814	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	2537	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTGTGTTCTGTAC	NA	False	NA	NA	False	AATAAA	-19	NA	97206682	97219932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
ENSMUSG00000018899.18_0	chr11	+	2115	10	FSM	ENSMUSG00000018899.18	ENSMUST00000108920.10	2136	10	19	2	-15	-2	multi-exon	FALSE	canonical	3	46	junction_1	9.82940913537621	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCGTGTGGCTTTTTATT	NA	False	NA	8	True	TATAAA	-15	NA	53660859	53668147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_53661105_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
ENSMUSG00000018899.18_10	chr11	+	641	1	ISM	ENSMUSG00000018899.18	ENSMUST00000108920.10	2136	10	6665	3	3527	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCGTGTGGCTTTTTAT	NA	False	NA	7	True	TATAAA	-14	NA	53667505	53668146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_53667500_53668100
ENSMUSG00000018899.18_3	chr11	+	2177	10	NIC	ENSMUSG00000018899.18	novel	2069	10	NA	NA	-26	-2	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	19.5170074613634	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCGTGTGGCTTTTTATT	NA	False	NA	8	True	TATAAA	-15	NA	53661276	53668147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_53661584_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
ENSMUSG00000018899.18_4	chr11	+	2559	9	ISM	ENSMUSG00000018899.18	ENSMUST00000108920.10	2136	10	580	2	86	-2	3prime_fragment	FALSE	canonical	3	59	junction_3	8.3132048573339	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCGTGTGGCTTTTTATT	NA	False	NA	8	True	TATAAA	-15	NA	53661420	53668147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
ENSMUSG00000018899.18_5	chr11	+	2094	10	FSM	ENSMUSG00000018899.18	ENSMUST00000019043.13	2069	10	-27	2	-9	-2	multi-exon	FALSE	canonical	1	2	junction_1	21.2573879677132	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCGTGTGGCTTTTTATT	NA	False	NA	8	True	TATAAA	-15	NA	53661293	53668147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_53661518_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
ENSMUSG00000018899.18_7	chr11	+	1666	7	ISM	ENSMUSG00000018899.18	ENSMUST00000019043.13	2069	10	3173	2	515	-2	3prime_fragment	FALSE	canonical	3	59	junction_1	9.35859676091097	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCGTGTGGCTTTTTATT	NA	False	NA	8	True	TATAAA	-15	NA	53664493	53668147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
ENSMUSG00000018900.8_1	chr11	-	3102	10	FSM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	-47	7	-47	-7	multi-exon	FALSE	canonical	3	28	junction_7	3.67507453523138	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATACCAATTGAATACA	NA	False	NA	NA	False	AATAAA	-16	NA	53782533	53755374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53766834_53766990_53774486_53774591_53781972
ENSMUSG00000018900.8_13	chr11	-	1149	1	ISM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	25963	7	5980	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATACCAATTGAATACA	7444	False	NA	NA	False	AATAAA	-16	NA	53756523	53755374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_53755400_53756500
ENSMUSG00000018900.8_15	chr11	-	5266	6	ISM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	14712	5	-5271	-5	intron_retention	FALSE	canonical	3	30	junction_5	3.32264954516723	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATACCAATTGAATACAAT	1989	False	NA	NA	False	AATAAA	-18	NA	53767774	53755372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493
ENSMUSG00000018900.8_17	chr11	-	1853	6	ISM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	-74	6420	-74	2717	5prime_fragment	FALSE	canonical	3	28	junction_3	3.37045990927054	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCTCTGACTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	53782560	53761787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_53762495_53764493_53764621_53765760_53765933_53766834_53766990_53774486_53774591_53781972
ENSMUSG00000018900.8_24	chr11	-	2237	7	ISM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	16605	1	-3378	-1	3prime_fragment	FALSE	canonical	3	30	junction_5	3.16227766016838	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATTGAATACAATCTTT	3882	False	NA	NA	False	AATAAA	-22	NA	53765881	53755368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760
ENSMUSG00000018900.8_4	chr11	-	2875	8	NIC	ENSMUSG00000018900.8	novel	3062	10	NA	NA	-79	-7	combination_of_known_junctions	FALSE	canonical	3	5	junction_7	10.8984177844347	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATACCAATTGAATACA	NA	False	NA	NA	False	AATAAA	-16	NA	53782565	53755374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53781972
ENSMUSG00000018900.8_5	chr11	-	3005	9	NIC	ENSMUSG00000018900.8	novel	3062	10	NA	NA	-105	-7	combination_of_known_splicesites	FALSE	canonical	3	3	junction_7	11.112352361224	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATACCAATTGAATACA	NA	False	NA	NA	False	AATAAA	-16	NA	53782591	53755374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53774486_53774591_53781972
ENSMUSG00000018900.8_8	chr11	-	2973	9	NIC	ENSMUSG00000018900.8	novel	3062	10	NA	NA	-22	-7	combination_of_known_splicesites	FALSE	canonical	3	5	junction_8	10.2339813855606	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATACCAATTGAATACA	NA	False	NA	NA	False	AATAAA	-16	NA	53782508	53755374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53766834_53766990_53781972
ENSMUSG00000018906.15_11	chr11	+	2618	15	ISM	ENSMUSG00000018906.15	ENSMUST00000093107.12	2263	16	120	4	-24	-4	3prime_fragment	FALSE	canonical	3	31	junction_11	15.186594518233	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCCTTAAATAGCCTTA	NA	False	NA	11	True	AATAAA	-13	NA	53991869	54022474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
ENSMUSG00000018906.15_13	chr11	+	2614	15	ISM	ENSMUSG00000018906.15	ENSMUST00000019050.12	2230	16	91	4	-14	-4	3prime_fragment	FALSE	canonical	3	35	junction_11	14.555313217418	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCCTTAAATAGCCTTA	NA	False	NA	11	True	AATAAA	-13	NA	53991879	54022474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017171_54017238_54019873_54019943_54020291_54020389_54022015
ENSMUSG00000018906.15_14	chr11	+	1827	12	NIC	ENSMUSG00000018906.15	novel	1997	3	NA	NA	-39	-2	combination_of_known_junctions	TRUE	canonical	1	6	junction_1	24.1373480367652	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTAAATAGCCTTATT	NA	False	NA	13	True	AATAAA	-15	NA	54003989	54022476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_54004156_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
ENSMUSG00000018906.15_17	chr11	+	2677	3	FSM	ENSMUSG00000018906.15	ENSMUST00000139315.2	1997	3	-697	17	-697	-4	multi-exon	FALSE	canonical	3	70	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCCTTAAATAGCCTTA	NA	False	NA	11	True	AATAAA	-13	NA	54017821	54022474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_54019943_54020291_54020389_54022015
ENSMUSG00000018906.15_3	chr11	+	2196	16	FSM	ENSMUSG00000018906.15	ENSMUST00000093107.12	2263	16	63	4	-4	-4	multi-exon	FALSE	canonical	3	31	junction_12	14.6945190084225	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCCTTAAATAGCCTTA	NA	False	NA	11	True	AATAAA	-13	NA	53991812	54022474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
ENSMUSG00000018906.15_5	chr11	+	2200	16	FSM	ENSMUSG00000018906.15	ENSMUST00000019050.12	2230	16	28	2	0	-2	multi-exon	FALSE	canonical	3	35	junction_12	14.0816665680357	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTAAATAGCCTTATT	NA	False	NA	13	True	AATAAA	-15	NA	53991816	54022476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017171_54017238_54019873_54019943_54020291_54020389_54022015
ENSMUSG00000018909.16_0	chr7	+	7061	16	FSM	ENSMUSG00000018909.16	ENSMUST00000098266.9	7132	16	62	9	62	-9	multi-exon	FALSE	canonical	3	7	junction_3	4.9486249493055	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGAGGACACTGGCTGTGT	NA	False	NA	7	True	ATTAAA	-12	NA	99184734	99255969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_99185006_99231467_99231499_99232866_99232928_99236421_99236467_99237204_99237402_99238101_99238162_99238857_99238926_99240469_99240606_99241710_99241796_99242196_99242270_99243827_99243966_99245229_99245314_99246242_99246267_99247697_99247769_99249007_99249060_99250304
ENSMUSG00000018909.16_3	chr7	+	4005	1	ISM	ENSMUSG00000018909.16	ENSMUST00000098266.9	7132	16	67296	5	8139	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGACACTGGCTGTGTTTTC	NA	False	NA	11	True	ATTAAA	-16	NA	99251968	99255973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_99252000_99256000
ENSMUSG00000018919.11_0	chr11	+	971	5	FSM	ENSMUSG00000018919.11	ENSMUST00000019063.3	1000	5	21	8	21	-8	multi-exon	FALSE	canonical	1	1	junction_1	5.95818764390649	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGGAAGCTAATGTGCCA	NA	False	NA	NA	False	AATAAA	-12	NA	70396090	70401996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70396331_70400619_70400701_70401040_70401178_70401394_70401579_70401667
ENSMUSG00000018920.12_0	chr11	-	1463	5	FSM	ENSMUSG00000018920.12	ENSMUST00000019064.9	2699	5	29	1207	29	0	multi-exon	FALSE	canonical	2	5	junction_4	7.17635004720366	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTGCCCCCATTGACAT	7629	False	NA	NA	False	NA	NA	NA	70350781	70346015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70346271_70346480_70346889_70349570_70349654_70349854_70349994_70350203
ENSMUSG00000018920.12_3	chr11	-	636	2	ISM	ENSMUSG00000018920.12	ENSMUST00000154475.2	1662	6	3795	2	3371	-2	3prime_fragment	FALSE	canonical	3	24	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATCTGCCCCCATTGAC	5167	False	NA	NA	False	NA	NA	NA	70346863	70346017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_70346271_70346480
ENSMUSG00000018921.12_0	chr11	-	3433	17	FSM	ENSMUSG00000018921.12	ENSMUST00000019065.10	3435	17	1	1	1	-1	multi-exon	FALSE	canonical	3	551	junction_9	48.6591701917532	1243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACCCTGTGCTGCTTTGGC	NA	False	NA	-28	True	AATAAA	-12	NA	70300853	70283709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70283849_70284587_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287381_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70296452_70296559_70297082_70297148_70300589
ENSMUSG00000018923.14_0	chr11	+	881	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	16	5	3	-5	multi-exon	FALSE	canonical	3	117	junction_2	11	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGCTAAGAGTCTCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	70342760	70344548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70342890_70343033_70343165_70343927
ENSMUSG00000018923.14_2	chr11	+	863	2	FSM	ENSMUSG00000018923.14	ENSMUST00000152348.2	870	2	-26	33	-13	-33	multi-exon	FALSE	canonical	3	117	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGCACACACAGTGGCTC	NA	False	NA	0	True	AATAAA	-16	NA	70342731	70344357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70343165_70343927
ENSMUSG00000018931.4_0	chr11	-	3317	3	FSM	ENSMUSG00000018931.4	ENSMUST00000019075.4	4179	3	49	813	49	-813	multi-exon	TRUE	canonical	3	156	junction_2	31	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTGCTCTCTGCTTTTC	6673	False	NA	-4	True	ATTAAA	-19	NA	60804589	60793884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60796948_60797707_60797827_60804454
ENSMUSG00000018931.4_1	chr11	-	2565	1	ISM	ENSMUSG00000018931.4	ENSMUST00000019075.4	4179	3	8189	813	8189	-813	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTGCTCTCTGCTTTTC	NA	False	NA	-4	True	ATTAAA	-19	NA	60796449	60793884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_60793900_60796400
ENSMUSG00000018932.10_3	chr11	+	2141	12	FSM	ENSMUSG00000018932.10	ENSMUST00000019076.10	2198	12	25	32	4	-15	multi-exon	FALSE	canonical	3	361	junction_6	27.3405217988137	629	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATCG	NA	False	NA	NA	False	NA	NA	NA	60822883	60843605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
ENSMUSG00000018965.12_0	chr5	+	1626	2	FSM	ENSMUSG00000018965.12	ENSMUST00000019109.8	1764	2	132	6	70	-6	multi-exon	FALSE	canonical	3	1727	junction_1	0	1666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTATCTGTGCCTGGCCT	NA	False	NA	3	True	AATAAA	-41	NA	33176291	33185304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_33176499_33183885
ENSMUSG00000018965.12_7	chr5	+	1213	1	ISM	ENSMUSG00000018965.12	ENSMUST00000019109.8	1764	2	7934	4	4959	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATCTGTGCCTGGCCTTG	NA	False	NA	5	True	AATAAA	-43	NA	33184093	33185306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_33184100_33185300
ENSMUSG00000018974.8_0	chr5	-	3584	19	FSM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	859	4	-13	-2	multi-exon	FALSE	canonical	3	367	junction_17	27.7084133944819	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAAGCCTTGTGCATTGC	NA	False	NA	-20	True	ATTAAA	-12	NA	113909712	113880510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897334_113899155_113899341_113900889_113900995_113902133_113902261_113909381
ENSMUSG00000018974.8_1	chr5	-	2121	8	ISM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	21196	4	3443	-2	3prime_fragment	FALSE	canonical	3	407	junction_5	18.235421910252	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAAGCCTTGTGCATTGC	NA	False	NA	-20	True	ATTAAA	-12	NA	113889375	113880510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263
ENSMUSG00000018974.8_2	chr5	-	1410	4	ISM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	26721	2	-194	0	3prime_fragment	FALSE	canonical	3	426	junction_3	10.2740233382816	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCCTTGTGCATTGCAG	NA	False	NA	-18	True	ATTAAA	-14	NA	113883850	113880508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640
ENSMUSG00000018974.8_6	chr5	-	3635	19	NIC	ENSMUSG00000018974.8	novel	4447	19	NA	NA	-10	-2	combination_of_known_junctions	FALSE	canonical	3	34	junction_15	91.6478768621147	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAAGCCTTGTGCATTGC	NA	False	NA	-20	True	ATTAAA	-12	NA	113909709	113880510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897388_113899155_113899341_113900889_113900995_113902133_113902261_113909381
ENSMUSG00000018983.10_1	chr4	+	4855	7	FSM	ENSMUSG00000018983.10	ENSMUST00000061721.6	4739	7	-119	3	-119	-3	multi-exon	FALSE	canonical	1	25	junction_4	12.2395079784914	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTTGTCTTGGTGTGAT	937	False	NA	13	True	ATTAAA	-17	NA	135899585	135923365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_135900350_135905746_135905853_135907668_135907889_135908596_135908756_135911733_135911849_135914109_135914303_135920067
ENSMUSG00000018983.10_10	chr4	+	4275	6	ISM	ENSMUSG00000018983.10	ENSMUST00000061721.6	4739	7	5858	3	-2531	-3	3prime_fragment	FALSE	canonical	1	25	junction_3	13.1666244725062	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTTGTCTTGGTGTGAT	6914	False	NA	13	True	ATTAAA	-17	NA	135905562	135923365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135905853_135907668_135907889_135908596_135908756_135911733_135911849_135914109_135914303_135920067
ENSMUSG00000018983.10_11	chr4	+	3985	5	ISM	ENSMUSG00000018983.10	ENSMUST00000061721.6	4739	7	7964	3	-425	-3	3prime_fragment	FALSE	canonical	1	25	junction_2	14.7203091000155	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTTGTCTTGGTGTGAT	9020	False	NA	13	True	ATTAAA	-17	NA	135907668	135923365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135907889_135908596_135908756_135911733_135911849_135914109_135914303_135920067
ENSMUSG00000018983.10_14	chr4	+	2366	1	ISM	ENSMUSG00000018983.10	ENSMUST00000061721.6	4739	7	21295	3	12906	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTTGTCTTGGTGTGAT	233	False	NA	13	True	ATTAAA	-17	NA	135920999	135923365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135921000_135923400
ENSMUSG00000018986.11_1	chr11	+	4947	3	FSM	ENSMUSG00000018986.11	ENSMUST00000019130.8	1816	3	-20	-3111	-20	3111	multi-exon	FALSE	canonical	1	4	junction_1	4.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCAGAAGATTCCGTTTG	3774	False	NA	-4	True	NA	NA	NA	83082135	83109091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83082235_83103369_83104440_83105313
ENSMUSG00000018986.11_2	chr11	+	5116	4	FSM	ENSMUSG00000018986.11	ENSMUST00000214041.2	1966	4	-20	-3130	-17	3116	multi-exon	FALSE	canonical	2	3	junction_1	4.49691252107735	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGATTCCGTTTGTCCTG	3777	False	NA	1	True	NA	NA	NA	83082138	83109096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83082235_83084868_83085036_83103369_83104440_83105313
ENSMUSG00000018995.13_0	chr7	+	2469	14	FSM	ENSMUSG00000018995.13	ENSMUST00000044466.12	3778	14	39	1270	-18	516	multi-exon	FALSE	canonical	3	94	junction_6	11.3976017408833	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACCTATGAAAGAAGTTA	7381	False	NA	2	True	ATTAAA	-14	NA	96600750	96712695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992_96709020_96711775
ENSMUSG00000018995.13_2	chr7	+	2183	14	NIC	ENSMUSG00000018995.13	novel	3778	14	NA	NA	20	516	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	27.7429024987159	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACCTATGAAAGAAGTTA	7378	False	NA	2	True	ATTAAA	-14	NA	96600747	96712695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_96600863_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992_96709020_96711775
ENSMUSG00000018999.15_0	chr6	-	1934	1	ISM	ENSMUSG00000018999.15	ENSMUST00000019143.9	6253	10	19300	2498	5671	845	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTGTTTGTTTGTTTGT	NA	False	NA	-27	True	TATAAA	-16	NA	34134746	34132812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_34132800_34134700
ENSMUSG00000018999.15_1	chr6	-	3626	10	FSM	ENSMUSG00000018999.15	ENSMUST00000019143.9	6253	10	127	2500	-14	843	multi-exon	FALSE	canonical	3	204	junction_2	11.5223882983853	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCATTTGTTTGTTTGTTT	NA	False	NA	-29	True	TATAAA	-14	NA	34153919	34132814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_34135562_34136367_34136444_34137407_34137484_34138610_34138721_34140263_34140325_34140523_34140606_34143308_34143359_34144559_34144663_34147395_34147510_34153712
ENSMUSG00000018999.15_2	chr6	-	3562	9	NIC	ENSMUSG00000018999.15	novel	6253	10	NA	NA	3	846	combination_of_known_splicesites	TRUE	canonical	1	2	junction_6	73.4536418430019	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTTGTTTGTTTGTT	NA	False	NA	-26	True	TATAAA	-17	NA	34153902	34132811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_34135562_34136367_34136444_34137407_34137484_34138610_34138721_34140263_34140325_34140523_34140606_34144559_34144663_34147395_34147510_34153712
ENSMUSG00000019027.9_0	chr14	-	3522	20	ISM	ENSMUSG00000019027.9	ENSMUST00000048603.8	12872	78	54348	11	-37	-11	3prime_fragment	FALSE	canonical	0	0	junction_4	1.18391809254758	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCCTGTTGTACCGTGGC	9844	False	NA	NA	False	ATTAAA	-12	NA	30991505	30982342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_30982505_30983002_30983238_30983445_30983798_30984109_30984241_30984369_30984541_30985075_30985253_30985324_30985505_30985806_30985978_30986271_30986404_30986479_30986639_30986867_30987013_30987219_30987417_30987835_30987988_30988271_30988468_30988596_30988823_30989411_30989573_30989668_30989819_30989942_30990063_30990741_30990868_30991326
ENSMUSG00000019039.15_18	chr9	+	1967	9	NIC	ENSMUSG00000019039.15	novel	1746	12	NA	NA	-7	1	intron_retention	FALSE	canonical	3	128	junction_6	19.4679223339318	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGAGAGTGAGGCGTGT	NA	False	NA	13	True	AATAAA	-15	NA	108447101	108449971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449661_108449749
ENSMUSG00000019039.15_23	chr9	+	2147	9	NIC	ENSMUSG00000019039.15	novel	1746	12	NA	NA	-12	-1	intron_retention	FALSE	canonical	3	128	junction_5	18.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTGAGAGTGAGGCGT	NA	False	NA	11	True	AATAAA	-13	NA	108447096	108449969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448719_108448811_108448874_108448980_108449497_108449591_108449661_108449749
ENSMUSG00000019039.15_29	chr9	+	1881	10	NIC	ENSMUSG00000019039.15	novel	1746	12	NA	NA	-6	1	intron_retention	FALSE	canonical	3	10	junction_5	47.0368912217046	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGAGAGTGAGGCGTGT	NA	False	NA	13	True	AATAAA	-15	NA	108447102	108449971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448634_108448719_108448811_108448874_108448980_108449497_108449591_108449661_108449749
ENSMUSG00000019039.15_5	chr9	+	1732	12	FSM	ENSMUSG00000019039.15	ENSMUST00000019183.14	1746	12	12	2	-12	1	multi-exon	FALSE	canonical	3	83	junction_8	26.2473926292634	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGAGAGTGAGGCGTGT	NA	False	NA	13	True	AATAAA	-15	NA	108447096	108449971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449064_108449139_108449317_108449385_108449497_108449591_108449661_108449749
ENSMUSG00000019039.15_6	chr9	+	1877	10	NIC	ENSMUSG00000019039.15	novel	1746	12	NA	NA	-12	1	intron_retention	FALSE	canonical	3	128	junction_6	18.4357409183867	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGAGAGTGAGGCGTGT	NA	False	NA	13	True	AATAAA	-15	NA	108447096	108449971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449497_108449591_108449661_108449749
ENSMUSG00000019054.14_0	chr5	+	941	5	FSM	ENSMUSG00000019054.14	ENSMUST00000111094.8	948	5	7	0	7	0	multi-exon	FALSE	canonical	3	123	junction_1	181.92443486239	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGTGTGTGAGCGAG	4058	False	NA	18	True	AATAAA	-19	NA	136982135	136995086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136982445_136991852_136991986_136993946_136994024_136994418_136994525_136994770
ENSMUSG00000019054.14_1	chr5	+	808	4	FSM	ENSMUSG00000019054.14	ENSMUST00000111097.8	601	4	-124	-83	7	0	multi-exon	FALSE	canonical	3	58	junction_1	234.963827003222	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGTGTGTGAGCGAG	4058	False	NA	18	True	AATAAA	-19	NA	136982135	136995086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136982445_136993946_136994024_136994418_136994525_136994770
ENSMUSG00000019054.14_5	chr5	+	2819	4	FSM	ENSMUSG00000019054.14	ENSMUST00000152658.2	565	4	-2033	-221	-1265	0	multi-exon	FALSE	canonical	3	509	junction_1	24.2257897474755	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGTGTGTGAGCGAG	2003	False	NA	18	True	AATAAA	-19	NA	136989665	136995086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136991986_136993946_136994024_136994418_136994525_136994770
ENSMUSG00000019054.14_7	chr5	+	747	5	FSM	ENSMUSG00000019054.14	ENSMUST00000019198.7	786	5	37	2	37	0	multi-exon	FALSE	canonical	3	370	junction_1	76.6823806359714	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGTGTGTGAGCGAG	3305	False	NA	18	True	AATAAA	-19	NA	136990967	136995086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136991083_136991852_136991986_136993946_136994024_136994418_136994525_136994770
ENSMUSG00000019055.16_0	chr4	-	2889	19	FSM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	44	310	2	-310	multi-exon	FALSE	canonical	3	68	junction_3	12.7855049099544	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTATGAGAGATGCCTG	NA	False	NA	-6	True	ATTAAA	-13	NA	148021180	147994519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914_148012979_148013996_148014110_148015578_148015743_148016083_148016221_148017187_148017280_148021058
ENSMUSG00000019055.16_1	chr4	-	2939	17	ISM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	4741	309	4682	-309	3prime_fragment	FALSE	canonical	3	68	junction_3	13.0144150848204	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTATGAGAGATGCCTGG	NA	False	NA	-5	True	ATTAAA	-14	NA	148016483	147994518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914_148012979_148013996_148014110_148015578_148015743_148016083
ENSMUSG00000019055.16_3	chr4	-	2251	14	ISM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	8257	309	-4783	-309	3prime_fragment	FALSE	canonical	3	68	junction_3	12.4006107885456	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTATGAGAGATGCCTGG	NA	False	NA	-5	True	ATTAAA	-14	NA	148012967	147994518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914
ENSMUSG00000019066.14_0	chr9	-	3077	5	NNC	ENSMUSG00000019066.14	novel	3835	5	NA	NA	-5	438	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	14.6692706021806	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAATAAC	2281	False	NA	NA	False	NA	NA	NA	21829440	21819499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_21821968_21825940_21826066_21826158_21826278_21827000_21827243_21829317
ENSMUSG00000019066.14_1	chr9	-	2263	5	FSM	ENSMUSG00000019066.14	ENSMUST00000115351.10	3835	5	46	1526	-7	-375	multi-exon	FALSE	canonical	3	21	junction_4	8.45576726264388	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCTTAAGATTCAGCAAC	2279	False	NA	1	True	ATTAAA	-22	NA	21829442	21820312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21821968_21825940_21826066_21826158_21826278_21827000_21827240_21829317
ENSMUSG00000019066.14_6	chr9	-	1687	1	Genic_Genomic	ENSMUSG00000019066.14	novel	NA	NA	NA	NA	9180	268	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTTGAAGAGGAATGG	NA	False	NA	NA	False	NA	NA	NA	21820205	21818518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_-_21818500_21820200
ENSMUSG00000019080.9_0	chr15	+	1566	5	FSM	ENSMUSG00000019080.9	ENSMUST00000019224.9	2246	5	8	672	8	77	multi-exon	FALSE	canonical	3	46	junction_1	6.01560470775798	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTATTCTGCAGTTTGG	9251	False	NA	9	True	CATAAA	-12	NA	76585672	76587767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76586551_76586843_76586992_76587078_76587204_76587273_76587384_76587462
ENSMUSG00000019080.9_3	chr15	+	1953	3	NIC	ENSMUSG00000019080.9	novel	2246	5	NA	NA	-1	83	intron_retention	FALSE	canonical	3	51	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGCAGTTTGGATCTTC	9242	False	NA	15	True	CATAAA	-18	NA	76585663	76587773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76586992_76587078_76587204_76587273
ENSMUSG00000019080.9_4	chr15	+	1490	5	NIC	ENSMUSG00000019080.9	novel	2246	5	NA	NA	9	16	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	22.7870577302117	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGCTCTCCTCAAAC	9252	False	NA	20	True	AATAAA	-33	NA	76585673	76587706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76586551_76586843_76586992_76587078_76587204_76587273_76587384_76587476
ENSMUSG00000019080.9_5	chr15	+	1860	4	NIC	ENSMUSG00000019080.9	novel	2246	5	NA	NA	13	83	intron_retention	FALSE	canonical	3	51	junction_2	4.24264068711928	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGCAGTTTGGATCTTC	9256	False	NA	15	True	CATAAA	-18	NA	76585677	76587773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76586992_76587078_76587204_76587273_76587384_76587462
ENSMUSG00000019082.19_12	chr7	-	2506	10	FSM	ENSMUSG00000019082.19	ENSMUST00000106007.10	2546	10	13	27	13	-20	multi-exon	FALSE	canonical	2	3	junction_9	39.7436228287703	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAAATAAATATTCT	3518	False	NA	-46	True	NA	NA	NA	141014494	141009688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141014443
ENSMUSG00000019082.19_15	chr7	-	2619	9	NIC	ENSMUSG00000019082.19	novel	2811	10	NA	NA	-8	0	intron_retention	TRUE	canonical	3	72	junction_8	22.1412369798979	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTTGCTTTAAGAGTC	498	False	NA	-22	True	AATAAA	-15	NA	141017514	141009664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
ENSMUSG00000019082.19_2	chr7	-	2530	10	NIC	ENSMUSG00000019082.19	novel	2811	10	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	12	junction_9	37.1154355431208	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAGATGCTTGCTTTAA	2756	False	NA	-27	True	AATAAA	-10	NA	141015256	141009669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141015200
ENSMUSG00000019082.19_5	chr7	-	2511	10	FSM	ENSMUSG00000019082.19	ENSMUST00000019226.14	2811	10	288	12	-11	0	multi-exon	FALSE	canonical	3	72	junction_9	20.9708792800344	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGATGCTTGCTTTAAG	495	False	NA	-26	True	AATAAA	-11	NA	141017517	141009668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
ENSMUSG00000019082.19_7	chr7	-	3139	8	NIC	ENSMUSG00000019082.19	novel	3264	9	NA	NA	-9	0	intron_retention	FALSE	canonical	3	72	junction_7	23.6246153191876	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGATGCTTGCTTTAAG	497	False	NA	-26	True	AATAAA	-11	NA	141017515	141009668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
ENSMUSG00000019087.14_0	chrX	+	2104	10	FSM	ENSMUSG00000019087.14	ENSMUST00000019231.12	2189	10	54	31	8	1	multi-exon	TRUE	canonical	3	647	junction_4	26.5934179176579	804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGCTTCGTGTCACTC	NA	False	NA	15	True	AATAAA	-20	NA	73340756	73348296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
ENSMUSG00000019087.14_3	chrX	+	2656	9	NIC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	8	1	combination_of_known_junctions	FALSE	canonical	3	665	junction_4	23.6748812035034	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGCTTCGTGTCACTC	NA	False	NA	15	True	AATAAA	-20	NA	73340756	73348296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
ENSMUSG00000019088.15_0	chrX	-	1502	8	FSM	ENSMUSG00000019088.15	ENSMUST00000239458.2	1625	8	122	1	12	0	multi-exon	FALSE	canonical	2	3	junction_5	3.01018678652935	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATGTATGCTTAATTCAA	NA	False	NA	NA	False	AATAAA	-16	NA	73325220	73316823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73317298_73317383_73317633_73317711_73317825_73317973_73318075_73320084_73320163_73320251_73320341_73320644_73320949_73325126
ENSMUSG00000019102.11_1	chr11	+	1314	9	ISM	ENSMUSG00000019102.11	ENSMUST00000019246.4	1729	11	4774	11	4774	-11	3prime_fragment	TRUE	canonical	2	6	junction_2	5.14629721255973	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAGTCGTGCATGCA	NA	False	NA	NA	False	AATAAA	-10	NA	61104344	61109236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_61104509_61105010_61105097_61105375_61105585_61106315_61106434_61107104_61107247_61107906_61108074_61108488_61108589_61108816_61108948_61109039
ENSMUSG00000019122.9_0	chr11	-	2879	4	FSM	ENSMUSG00000019122.9	ENSMUST00000019266.6	3006	4	119	8	119	-8	multi-exon	FALSE	canonical	3	19	junction_3	22.5141930543577	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTCAGACGGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	83469343	83463752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_83466322_83466668_83466778_83467200_83467273_83469214
ENSMUSG00000019122.9_2	chr11	-	1916	1	ISM	ENSMUSG00000019122.9	ENSMUST00000019266.6	3006	4	3802	0	2308	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACGGTTGTCTTGGTTCCA	NA	False	NA	NA	False	NA	NA	NA	83465660	83463744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_83463700_83465700
ENSMUSG00000019124.11_0	chr6	-	2420	1	ISM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	58176	4	1048	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCTAGGAGCCTCTTGT	NA	False	NA	-4	True	AATAAA	-13	NA	54485298	54482878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_54482900_54485300
ENSMUSG00000019124.11_1	chr6	-	4694	8	FSM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	107	9	107	-9	multi-exon	FALSE	canonical	3	46	junction_2	7.92824967172092	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCAATACCTAGGAGCCT	NA	False	NA	-9	True	AATAAA	-8	NA	54543367	54482883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_54486348_54489033_54489215_54497684_54497851_54499744_54499940_54502493_54502697_54511397_54511580_54525208_54525369_54543224
ENSMUSG00000019124.11_2	chr6	-	3908	4	ISM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	43636	6	-2000	-6	3prime_fragment	FALSE	canonical	3	46	junction_2	4.49691252107735	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATACCTAGGAGCCTCTT	NA	False	NA	-6	True	AATAAA	-11	NA	54499838	54482880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_54486348_54489033_54489215_54497684_54497851_54499744
ENSMUSG00000019124.11_6	chr6	-	4496	7	ISM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	18161	9	6118	-9	3prime_fragment	FALSE	canonical	3	46	junction_2	7.05730511991338	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCAATACCTAGGAGCCT	5817	False	NA	-9	True	AATAAA	-8	NA	54525313	54482883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_54486348_54489033_54489215_54497684_54497851_54499744_54499940_54502493_54502697_54511397_54511580_54525208
ENSMUSG00000019132.12_0	chr13	+	3079	5	FSM	ENSMUSG00000019132.12	ENSMUST00000019276.12	5849	5	509	2261	146	1276	multi-exon	FALSE	canonical	3	109	junction_1	16.0370664399696	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGGGAA	NA	False	NA	64	True	NA	NA	NA	24986148	24997919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_24987493_24988764_24988942_24989844_24989968_24993868_24994004_24996619
ENSMUSG00000019132.12_10	chr13	+	1013	1	ISM	ENSMUSG00000019132.12	ENSMUST00000019276.12	5849	5	11267	2261	10904	1276	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGGGAA	6519	False	NA	64	True	NA	NA	NA	24996906	24997919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_24996900_24997900
ENSMUSG00000019132.12_7	chr13	+	1744	4	ISM	ENSMUSG00000019132.12	ENSMUST00000155575.2	600	5	2795	-1318	2795	1318	3prime_fragment	FALSE	canonical	3	137	junction_1	6.94422221866655	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTCCCGGCTACTCAG	NA	False	NA	106	True	AATAAA	-8	NA	24988797	24997961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_24988942_24989844_24989968_24993868_24994004_24996619
ENSMUSG00000019132.12_9	chr13	+	1383	2	ISM	ENSMUSG00000019132.12	ENSMUST00000155575.2	600	5	7864	-1222	7864	1222	3prime_fragment	FALSE	canonical	3	153	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAACTAGTGCTTACTGG	3479	False	NA	10	True	AGTAAA	-25	NA	24993866	24997865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_24994004_24996619
ENSMUSG00000019139.11_0	chr8	+	1811	11	FSM	ENSMUSG00000019139.11	ENSMUST00000019283.10	1836	11	21	4	12	-4	multi-exon	FALSE	canonical	3	300	junction_1	49.1426495012225	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAAGCCTCCTTGTGTGC	NA	False	NA	14	True	AATAAA	-10	NA	71047151	71049934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
ENSMUSG00000019139.11_1	chr8	+	1929	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210878.2	1916	10	-17	4	0	-4	multi-exon	FALSE	canonical	3	300	junction_1	45.5894183087303	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAAGCCTCCTTGTGTGC	NA	False	NA	14	True	AATAAA	-10	NA	71047122	71049934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
ENSMUSG00000019139.11_23	chr8	+	1770	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210005.2	1914	10	138	6	-108	-4	multi-exon	FALSE	canonical	3	316	junction_3	42.074302294634	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAAGCCTCCTTGTGTGC	NA	False	NA	14	True	AATAAA	-10	NA	71047268	71049934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
ENSMUSG00000019143.16_11	chr18	+	2668	12	NIC	ENSMUSG00000019143.16	novel	3336	13	NA	NA	-15	175	intron_retention	FALSE	canonical	3	88	junction_9	17.4327515454756	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGAGGACCTGAGTTCAT	NA	False	NA	9	True	NA	NA	NA	36916306	36924922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36922663_36923186_36923304_36923521_36923669_36924122
ENSMUSG00000019143.16_3	chr18	+	2402	13	FSM	ENSMUSG00000019143.16	ENSMUST00000152954.8	3336	13	244	690	-17	178	multi-exon	FALSE	canonical	3	88	junction_10	16.7752711519731	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGACCTGAGTTCATTTC	NA	False	NA	12	True	NA	NA	NA	36916304	36924925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36922663_36923186_36923304_36923521_36923669_36924122
ENSMUSG00000019143.16_5	chr18	+	2160	12	FSM	ENSMUSG00000019143.16	ENSMUST00000019287.9	2002	12	20	-178	-18	178	multi-exon	FALSE	canonical	3	6	junction_9	36.3770429831556	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGACCTGAGTTCATTTC	NA	False	NA	12	True	NA	NA	NA	36916303	36924925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36923186_36923304_36923521_36923669_36924122
ENSMUSG00000019158.10_0	chr7	+	643	3	FSM	ENSMUSG00000019158.10	ENSMUST00000019302.10	815	3	171	1	-13	-1	multi-exon	FALSE	canonical	3	728	junction_1	16.5	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCAAGACTCTGAGTGAT	NA	False	NA	15	True	ATTAAA	-16	NA	16186874	16189414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16187096_16188045_16188139_16189085
ENSMUSG00000019158.10_2	chr7	+	680	3	FSM	ENSMUSG00000019158.10	ENSMUST00000209536.2	699	3	14	5	14	-1	multi-exon	FALSE	canonical	3	42	junction_1	359.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCAAGACTCTGAGTGAT	NA	False	NA	15	True	ATTAAA	-16	NA	16186901	16189414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16187096_16187981_16188139_16189085
ENSMUSG00000019158.10_3	chr7	+	274	1	ISM	ENSMUSG00000019158.10	ENSMUST00000209536.2	699	3	2255	3	2255	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAGACTCTGAGTGATAG	NA	False	NA	17	True	ATTAAA	-18	NA	16189142	16189416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_16189100_16189400
ENSMUSG00000019173.12_0	chr11	-	1613	6	FSM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	42	260	3	-258	multi-exon	FALSE	canonical	3	116	junction_2	14.961283367412	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACGCTTGTCTTCCTCGTC	NA	False	NA	-4	True	AATATA	-20	NA	100628999	100606094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740_100610995_100628903
ENSMUSG00000019173.12_1	chr11	-	1414	5	ISM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	18152	258	10152	-256	3prime_fragment	FALSE	canonical	3	116	junction_2	16.3152535990097	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCTTGTCTTCCTCGTCCT	9298	False	NA	-2	True	AATATA	-22	NA	100610889	100606092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740
ENSMUSG00000019173.12_2	chr11	-	588	1	ISM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	22361	258	14361	-256	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCTTGTCTTCCTCGTCCT	6724	False	NA	-2	True	AATATA	-22	NA	100606680	100606092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100606100_100606700
ENSMUSG00000019173.12_5	chr11	-	994	2	ISM	ENSMUSG00000019173.12	ENSMUST00000019317.12	1967	6	21360	256	13360	-256	3prime_fragment	FALSE	canonical	3	147	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCTTGTCTTCCTCGTCCT	5723	False	NA	-2	True	AATATA	-22	NA	100607681	100606092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100606989_100607583
ENSMUSG00000019173.12_6	chr11	-	2595	5	NIC	ENSMUSG00000019173.12	novel	1967	6	NA	NA	4	-265	intron_retention	FALSE	canonical	3	135	junction_4	8.66025403784439	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGACCTCACGCTTGTCTT	NA	False	NA	-11	True	AATATA	-13	NA	100628998	100606101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_100606989_100607583_100608791_100609256_100609409_100610740_100610995_100628903
ENSMUSG00000019173.12_7	chr11	-	1120	6	FSM	ENSMUSG00000019173.12	ENSMUST00000019317.12	1967	6	37	810	-2	-810	multi-exon	FALSE	canonical	1	1	junction_2	59.308009577122	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATCTTCTGCTCTTCCCA	NA	False	NA	15	True	AATATA	-2	NA	100629004	100606646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100606989_100607583_100607732_100608667_100608791_100609256_100609409_100610740_100610995_100628903
ENSMUSG00000019179.11_0	chr5	+	1277	9	FSM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	175	4	-7	-4	multi-exon	FALSE	canonical	3	4657	junction_8	277.596267085853	3462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGTCTCTGTAGATTTC	628	False	NA	34	True	AGTAAA	-21	NA	135807508	135819241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
ENSMUSG00000019188.17_0	chr2	+	1741	13	FSM	ENSMUSG00000019188.17	ENSMUST00000089059.9	1743	13	2	0	2	0	multi-exon	FALSE	canonical	3	19	junction_11	48.170054667466	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAGCTCTCAGCAGCTC	NA	False	NA	21	True	ATTAAA	-35	NA	152511409	152546956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152545914_152546115_152546541
ENSMUSG00000019188.17_1	chr2	+	1036	3	FSM	ENSMUSG00000019188.17	ENSMUST00000148156.2	2769	3	-5	1738	-5	-1738	multi-exon	FALSE	canonical	3	150	junction_2	4.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTGTGATCACCTGTGT	NA	False	NA	NA	False	NA	NA	NA	152511400	152523623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152511685_152519461_152519561_152522970
ENSMUSG00000019188.17_11	chr2	+	2497	8	ISM	ENSMUSG00000019188.17	ENSMUST00000125366.8	5204	12	17712	3622	-4666	12	3prime_fragment	FALSE	canonical	3	117	junction_3	17.083229633002	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCTCTGCCTAGTGTTT	NA	False	NA	33	True	NA	NA	NA	152529092	152546968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152546541
ENSMUSG00000019188.17_18	chr2	+	629	2	ISM	ENSMUSG00000019188.17	ENSMUST00000125366.8	5204	12	30606	3622	8228	12	3prime_fragment	FALSE	canonical	3	175	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCTCTGCCTAGTGTTT	NA	False	NA	33	True	NA	NA	NA	152541986	152546968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_152542189_152546541
ENSMUSG00000019188.17_2	chr2	+	1554	12	FSM	ENSMUSG00000019188.17	ENSMUST00000125366.8	5204	12	28	3622	1	12	multi-exon	FALSE	canonical	3	117	junction_7	14.82905345753	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCTCTGCCTAGTGTTT	NA	False	NA	33	True	NA	NA	NA	152511408	152546968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152546541
ENSMUSG00000019189.14_2	chr11	+	3547	11	FSM	ENSMUSG00000019189.14	ENSMUST00000019333.10	3570	11	16	7	-3	-7	multi-exon	TRUE	canonical	3	286	junction_6	37.2538588605261	732	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAACCGTTGTATTCCT	9743	False	NA	5	True	AATAAA	-11	NA	44409806	44456340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_44410102_44415754_44415971_44422102_44422212_44433455_44433548_44439590_44439827_44442470_44442647_44445964_44446106_44448082_44448266_44450798_44450947_44452291_44452649_44454746
ENSMUSG00000019194.16_0	chr7	-	1641	5	FSM	ENSMUSG00000019194.16	ENSMUST00000211945.2	1501	5	-141	1	18	-1	multi-exon	FALSE	canonical	3	16	junction_4	3.69966214673719	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCTATTCTCTCATTAA	NA	False	NA	-2	True	AATAAA	-15	NA	30826410	30815949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30816721_30817130_30817273_30822330_30822572_30824479_30824647_30826090
ENSMUSG00000019194.16_2	chr7	-	1537	6	FSM	ENSMUSG00000019194.16	ENSMUST00000098548.8	1573	6	35	1	35	-1	multi-exon	FALSE	canonical	3	16	junction_5	3.38230690505755	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCTATTCTCTCATTAA	NA	False	NA	-2	True	AATAAA	-15	NA	30826393	30815949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30816562_30816648_30816721_30817130_30817273_30822330_30822572_30824479_30824647_30826090
ENSMUSG00000019210.11_1	chr6	-	1217	9	FSM	ENSMUSG00000019210.11	ENSMUST00000019354.11	1312	9	94	1	-7	-1	multi-exon	FALSE	canonical	3	841	junction_3	98.1488028454754	593	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAGTTGTTGTTCCTTAT	NA	False	NA	-4	True	ATTAAA	-18	NA	120799660	120772205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
ENSMUSG00000019214.15_0	chr17	-	3073	22	FSM	ENSMUSG00000019214.15	ENSMUST00000048054.14	3214	22	18	123	9	-2	multi-exon	FALSE	canonical	3	337	junction_21	100.708127696462	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGTGGGTCAGGCTCAT	5692	False	NA	-20	True	TATAAA	-15	NA	25946375	25938022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
ENSMUSG00000019214.15_2	chr17	-	3075	22	FSM	ENSMUSG00000019214.15	ENSMUST00000170070.3	3208	22	10	123	10	-2	multi-exon	FALSE	canonical	3	468	junction_21	77.5978060329916	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGTGGGTCAGGCTCAT	5693	False	NA	-20	True	TATAAA	-15	NA	25946374	25938022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
ENSMUSG00000019235.10_18	chr12	-	2442	11	FSM	ENSMUSG00000019235.10	ENSMUST00000221972.2	2881	11	14	425	0	-34	multi-exon	FALSE	canonical	1	2	junction_6	69.4942443659905	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCTCTCCTGTGTCAGA	NA	False	NA	-43	True	AATAAA	-16	NA	85198024	85182447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117_85187251_85187602_85187651_85193636_85193730_85194519_85194645_85196397_85196683_85197936
ENSMUSG00000019235.10_24	chr12	-	1792	6	NIC	ENSMUSG00000019235.10	novel	2881	11	NA	NA	-474	-35	combination_of_known_junctions	FALSE	canonical	3	30	junction_4	48.0441463656084	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGGCTCTCCTGTGTCAG	617	False	NA	-44	True	AATAAA	-15	NA	85187237	85182448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185520_85185851_85186443_85187117
ENSMUSG00000019235.10_27	chr12	-	2702	4	ISM	ENSMUSG00000019235.10	ENSMUST00000222232.2	2034	5	-469	133	-469	-127	intron_retention	FALSE	canonical	3	141	junction_2	8.25967446224258	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGAAGCCAGTGTGTTT	622	False	NA	-20	True	AATAAA	-9	NA	85187232	85182540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426
ENSMUSG00000019235.10_3	chr12	-	1669	7	NNC	ENSMUSG00000019235.10	novel	2881	11	NA	NA	-473	-121	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	54.9989898897142	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCAGTGTGTTTAAGAGC	618	False	NA	-14	True	AATAAA	-15	NA	85187236	85182534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_85183095_85183127_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117
ENSMUSG00000019235.10_36	chr12	-	2321	5	ISM	ENSMUSG00000019235.10	ENSMUST00000221972.2	2881	11	10852	518	-423	-127	intron_retention	FALSE	canonical	3	138	junction_4	9.5655632348545	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGAAGCCAGTGTGTTT	668	False	NA	-20	True	AATAAA	-9	NA	85187186	85182540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851
ENSMUSG00000019235.10_5	chr12	-	1781	6	ISM	ENSMUSG00000019235.10	ENSMUST00000221972.2	2881	11	10808	427	-467	-36	3prime_fragment	FALSE	canonical	3	114	junction_5	16.4073154415949	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGGCTCTCCTGTGTCA	624	False	NA	-45	True	AATAAA	-14	NA	85187230	85182449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117
ENSMUSG00000019254.17_1	chr7	-	2982	22	FSM	ENSMUSG00000019254.17	ENSMUST00000013886.9	2983	22	-2	3	-2	0	multi-exon	FALSE	canonical	3	198	junction_16	25.6093980765123	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGACTTTGTCTCCTGA	9939	False	NA	-6	True	AATAAA	-14	NA	4504681	4484521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4485158_4485235_4485287_4485377_4485429_4485582_4485688_4485789_4485893_4485971_4486013_4486101_4486185_4486339_4486401_4486472_4486557_4486641_4486733_4486939_4487072_4487448_4487517_4487617_4487771_4488009_4488084_4488187_4488316_4488387_4488462_4489356_4489432_4489509_4489655_4492731_4492892_4500215_4500335_4500414_4500546_4504264
ENSMUSG00000019254.17_6	chr7	-	2980	22	FSM	ENSMUSG00000019254.17	ENSMUST00000124248.8	2667	22	-318	5	1	-2	multi-exon	FALSE	canonical	3	46	junction_7	53.3921869151542	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTGACTTTGTCTCCT	9942	False	NA	-8	True	AATAAA	-12	NA	4504678	4484523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4485158_4485235_4485287_4485377_4485429_4485582_4485688_4485789_4485893_4485971_4486013_4486101_4486188_4486339_4486401_4486472_4486557_4486641_4486733_4486939_4487072_4487448_4487517_4487617_4487771_4488009_4488084_4488187_4488316_4488387_4488462_4489356_4489432_4489509_4489655_4492731_4492892_4500215_4500335_4500414_4500546_4504264
ENSMUSG00000019256.18_1	chr12	-	5524	11	FSM	ENSMUSG00000019256.18	ENSMUST00000116436.9	5548	11	12	12	12	-12	multi-exon	FALSE	canonical	3	35	junction_9	5.59016994374947	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAATATAAATAGTGTTT	NA	False	NA	NA	False	AATAAA	-7	NA	35585025	35547984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_35550700_35553711_35554976_35556243_35556386_35557418_35557529_35558128_35558332_35559964_35560096_35561057_35561170_35562857_35562948_35565019_35565124_35576679_35576868_35584560
ENSMUSG00000019256.18_3	chr12	-	2343	1	ISM	ENSMUSG00000019256.18	ENSMUST00000116436.9	5548	11	34701	21	26442	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACTAACCACCAAATATAA	NA	False	NA	NA	False	NA	NA	NA	35550336	35547993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_35548000_35550300
ENSMUSG00000019256.18_6	chr12	-	3357	2	ISM	ENSMUSG00000019256.18	ENSMUST00000116436.9	5548	11	30687	9	22428	-9	3prime_fragment	FALSE	canonical	3	52	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATAAATAGTGTTTTCA	NA	False	NA	NA	False	AATAAA	-10	NA	35554350	35547981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_35550700_35553711
ENSMUSG00000019261.4_2	chr8	+	3261	7	FSM	ENSMUSG00000019261.4	ENSMUST00000019405.4	3314	7	52	1	2	0	multi-exon	FALSE	canonical	3	269	junction_1	20.5236990384829	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTTGGTCTTACTGTCT	NA	False	NA	12	True	AATAAA	-12	NA	71358627	71370170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71358772_71363588_71363694_71364489_71364573_71365156_71365298_71365549_71367639_71368994_71369219_71369695
ENSMUSG00000019261.4_35	chr8	+	2856	4	ISM	ENSMUSG00000019261.4	ENSMUST00000213083.2	4635	5	6593	3	768	0	3prime_fragment	FALSE	canonical	3	273	junction_1	26.1916017074176	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTTGGTCTTACTGTCT	NA	False	NA	12	True	AATAAA	-12	NA	71365229	71370170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71365298_71365549_71367639_71368994_71369219_71369695
ENSMUSG00000019261.4_38	chr8	+	2094	3	ISM	ENSMUSG00000019261.4	ENSMUST00000213083.2	4635	5	7607	3	1782	0	3prime_fragment	FALSE	canonical	3	276	junction_1	27	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTTGGTCTTACTGTCT	NA	False	NA	12	True	AATAAA	-12	NA	71366243	71370170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71367639_71368994_71369219_71369695
ENSMUSG00000019278.6_0	chr8	+	2078	11	NNC	ENSMUSG00000019278.6	novel	985	7	NA	NA	-33	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTGAATGGCCAATGACC	NA	False	NA	NA	False	AATAAA	-19	NA	123920199	123928543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_123920250_123920771_123920926_123925452_123925586_123925783_123925917_123926032_123926184_123926360_123926431_123926679_123926857_123926945_123927031_123927105_123927182_123927376_123927513_123927630
ENSMUSG00000019295.9_0	chr5	-	2310	4	FSM	ENSMUSG00000019295.9	ENSMUST00000019439.9	2828	4	512	6	-5	-3	multi-exon	FALSE	canonical	3	50	junction_3	8.99382504215469	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGATGTACTTCATTTTG	NA	False	NA	-5	True	AATAAA	-13	NA	33815248	33810565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814966
ENSMUSG00000019295.9_1	chr5	-	2664	4	NIC	ENSMUSG00000019295.9	novel	2369	4	NA	NA	-8	-3	combination_of_known_junctions	FALSE	canonical	2	7	junction_3	28.5773803324704	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGATGTACTTCATTTTG	NA	False	NA	-5	True	AATAAA	-13	NA	33815251	33810565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_33811959_33812056_33812217_33812666_33813142_33814615
ENSMUSG00000019295.9_2	chr5	-	2728	2	ISM	ENSMUSG00000019295.9	ENSMUST00000140931.2	2369	4	1857	-2	-556	-1	intron_retention	FALSE	canonical	3	72	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACTTCATTTTGTTTAA	NA	False	NA	0	True	AATAAA	-18	NA	33813386	33810560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_33811959_33812056
ENSMUSG00000019295.9_3	chr5	-	4136	3	ISM	ENSMUSG00000019295.9	ENSMUST00000140931.2	2369	4	-6	3	-6	-3	intron_retention	FALSE	canonical	3	62	junction_2	5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGATGTACTTCATTTTG	NA	False	NA	-5	True	AATAAA	-13	NA	33815249	33810565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_33811959_33812056_33812217_33812666
ENSMUSG00000019295.9_6	chr5	-	2379	4	FSM	ENSMUSG00000019295.9	ENSMUST00000140931.2	2369	4	-13	3	-13	-3	multi-exon	FALSE	canonical	1	1	junction_3	31.3793987620328	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGATGTACTTCATTTTG	NA	False	NA	-5	True	AATAAA	-13	NA	33815256	33810565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814905
ENSMUSG00000019297.10_0	chr14	+	2225	10	FSM	ENSMUSG00000019297.10	ENSMUST00000019441.9	3694	10	28	1441	28	-1441	multi-exon	FALSE	canonical	3	658	junction_1	26.1788718880958	952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATATTTTTATTTTATT	NA	False	NA	22	True	NA	NA	NA	55983177	55991516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55983478_55983617_55984068_55986788_55986900_55987448_55987591_55988509_55988703_55989514_55989656_55989993_55990120_55990268_55990506_55990716_55990823_55991097
ENSMUSG00000019297.10_31	chr14	+	1824	9	ISM	ENSMUSG00000019297.10	ENSMUST00000019441.9	3694	10	566	1444	566	-1444	3prime_fragment	FALSE	canonical	3	659	junction_1	23.4464149711635	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGAAATATTTTTATTTT	NA	False	NA	19	True	NA	NA	NA	55983715	55991513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55984068_55986788_55986900_55987448_55987591_55988509_55988703_55989514_55989656_55989993_55990120_55990268_55990506_55990716_55990823_55991097
ENSMUSG00000019301.6_0	chr11	+	729	2	ISM	ENSMUSG00000019301.6	ENSMUST00000019445.6	1339	6	1278	11	1278	-11	3prime_fragment	FALSE	canonical	3	24	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATCATGTATCATGTGGA	635	False	NA	NA	False	NA	NA	NA	100970514	100971342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100970661_100970759
ENSMUSG00000019302.17_0	chr11	+	3954	21	FSM	ENSMUSG00000019302.17	ENSMUST00000103110.10	2716	21	51	-1289	16	0	multi-exon	FALSE	canonical	3	25	junction_5	41.6171839508634	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAAGCTGCCTGTCTCTG	NA	False	NA	11	True	AATAAA	-16	NA	100900328	100954539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917485_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100945851_100945970_100946259_100946432_100953137
ENSMUSG00000019302.17_1	chr11	+	3944	21	NIC	ENSMUSG00000019302.17	novel	3967	22	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	127	junction_18	25.9536124653197	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAAGCTGCCTGTCTCTG	NA	False	NA	11	True	AATAAA	-16	NA	100900317	100954539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100945851_100945970_100946259_100946432_100953137
ENSMUSG00000019302.17_13	chr11	+	2330	17	ISM	ENSMUSG00000019302.17	ENSMUST00000168757.9	3967	22	20	18889	20	1	5prime_fragment	FALSE	canonical	3	143	junction_12	25.0571222409917	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTCCTGGTCGTGATTT	NA	False	NA	NA	False	AATAAA	-14	NA	100900332	100935650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341
ENSMUSG00000019302.17_4	chr11	+	3985	22	NIC	ENSMUSG00000019302.17	novel	4008	22	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_5	56.386100151096	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAAGCTGCCTGTCTCTG	NA	False	NA	11	True	AATAAA	-16	NA	100900315	100954539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917485_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100940284_100940303_100945851_100945970_100946259_100946432_100953137
ENSMUSG00000019302.17_5	chr11	+	3962	22	FSM	ENSMUSG00000019302.17	ENSMUST00000044721.13	4008	22	40	6	5	0	multi-exon	FALSE	canonical	3	32	junction_19	48.1567734584863	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAAGCTGCCTGTCTCTG	NA	False	NA	11	True	AATAAA	-16	NA	100900317	100954539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100940284_100940303_100945851_100945970_100946259_100946432_100953137
ENSMUSG00000019303.15_0	chr11	-	917	8	FSM	ENSMUSG00000019303.15	ENSMUST00000019447.15	1291	8	33	341	-3	-7	multi-exon	FALSE	canonical	3	316	junction_7	41.1021624139417	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACTTAATTTCCTCT	NA	False	NA	22	True	AATATA	-10	NA	100986229	100982989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983_100986085_100986168
ENSMUSG00000019303.15_2	chr11	-	986	7	FSM	ENSMUSG00000019303.15	ENSMUST00000126386.8	1030	7	12	32	12	-7	multi-exon	FALSE	canonical	3	369	junction_2	24.7571538482651	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACTTAATTTCCTCT	NA	False	NA	22	True	AATATA	-10	NA	100986214	100982989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983
ENSMUSG00000019303.15_4	chr11	-	1018	7	NIC	ENSMUSG00000019303.15	novel	1030	7	NA	NA	-7	8	intron_retention	FALSE	canonical	3	23	junction_5	148.134698463557	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGGATGATCAAACCTC	NA	False	NA	-13	True	TATAAA	-13	NA	100986209	100982974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984641_100985761_100985852_100985983
ENSMUSG00000019312.11_0	chr11	+	2175	15	FSM	ENSMUSG00000019312.11	ENSMUST00000019456.5	2397	15	217	5	3	-5	multi-exon	FALSE	canonical	3	41	junction_1	7.18736135624932	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACATCTGTGAGTCCTGTC	NA	False	NA	13	True	AATAAA	-13	NA	98337876	98346194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98338076_98341591_98341749_98341853_98342005_98342131_98342289_98342420_98342543_98342667_98342746_98342944_98343095_98344006_98344118_98344320_98344420_98344618_98344700_98344797_98344915_98345046_98345108_98345223_98345312_98345408_98345503_98345684
ENSMUSG00000019320.15_1	chr17	+	2319	9	FSM	ENSMUSG00000019320.15	ENSMUST00000019464.8	2238	9	-85	4	-85	0	multi-exon	FALSE	canonical	1	4	junction_2	2.89125837655509	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATCACTGTGCACTGAG	NA	False	NA	NA	False	AATAAA	-17	NA	24915122	24919499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24916099_24917193_24917383_24917491_24917573_24917759_24917836_24917918_24918097_24918242_24918425_24918517_24918632_24918871_24918990_24919094
ENSMUSG00000019320.15_2	chr17	+	3423	7	NIC	ENSMUSG00000019320.15	novel	2238	9	NA	NA	-22	-2	intron_retention	FALSE	canonical	1	4	junction_1	3.09569593683445	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGACTTCACCCAAATCAC	NA	False	NA	NA	False	AATAAA	-6	NA	24915185	24919488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24917383_24917491_24917573_24917759_24918097_24918242_24918425_24918517_24918632_24918871_24918990_24919094
ENSMUSG00000019320.15_3	chr17	+	1354	8	ISM	ENSMUSG00000019320.15	ENSMUST00000019464.8	2238	9	1977	2	-24	2	3prime_fragment	FALSE	canonical	1	4	junction_1	2.99659670905758	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCACTGTGCACTGAGGG	NA	False	NA	NA	False	AATAAA	-19	NA	24917184	24919501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24917383_24917491_24917573_24917759_24917836_24917918_24918097_24918242_24918425_24918517_24918632_24918871_24918990_24919094
ENSMUSG00000019338.14_0	chr3	-	3492	8	ISM	ENSMUSG00000019338.14	ENSMUST00000019482.8	4632	9	3644	130	213	0	3prime_fragment	FALSE	canonical	3	106	junction_4	14.577029735799	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGCTTTTCTTTTTAT	NA	False	NA	-1	True	ATTAAA	-22	NA	94918905	94914142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655
ENSMUSG00000019338.14_1	chr3	-	4586	10	NIC	ENSMUSG00000019338.14	novel	4617	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_9	37.0118432830611	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGCTTTTCTTTTTAT	NA	False	NA	-1	True	ATTAAA	-22	NA	94922746	94914142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94921143_94921240_94922630
ENSMUSG00000019338.14_10	chr3	-	4471	9	FSM	ENSMUSG00000019338.14	ENSMUST00000019482.8	4632	9	31	130	11	0	multi-exon	FALSE	canonical	1	6	junction_8	42.3657807080195	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGCTTTTCTTTTTAT	NA	False	NA	-1	True	ATTAAA	-22	NA	94922518	94914142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94922421
ENSMUSG00000019338.14_15	chr3	-	1473	4	ISM	ENSMUSG00000019338.14	ENSMUST00000019482.8	4632	9	6571	130	3140	0	3prime_fragment	FALSE	canonical	3	126	junction_1	3.85861230093008	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGCTTTTCTTTTTAT	NA	False	NA	-1	True	ATTAAA	-22	NA	94915978	94914142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895
ENSMUSG00000019338.14_2	chr3	-	4502	9	NIC	ENSMUSG00000019338.14	novel	4617	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_8	23.3422230089595	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGCTTTTCTTTTTAT	NA	False	NA	-1	True	ATTAAA	-22	NA	94922758	94914142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94922630
ENSMUSG00000019338.14_4	chr3	-	1075	1	ISM	ENSMUSG00000019338.14	ENSMUST00000146169.2	4930	3	4129	14	4129	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTCAAACAAAAATTAAAAAA	NA	False	NA	96	True	NA	NA	NA	94914989	94913914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94913900_94915000
ENSMUSG00000019338.14_5	chr3	-	4567	10	NIC	ENSMUSG00000019338.14	novel	4632	9	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_9	41.4428060444694	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGCTTTTCTTTTTAT	NA	False	NA	-1	True	ATTAAA	-22	NA	94922518	94914142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94921143_94921240_94922421
ENSMUSG00000019362.9_1	chr8	-	615	3	FSM	ENSMUSG00000019362.9	ENSMUST00000019506.9	616	3	2	-1	2	1	multi-exon	FALSE	canonical	3	1764	junction_2	46	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTGTGTGCTGTTTGGTG	9836	False	NA	-6	True	AATAAA	-13	NA	84976346	84972865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84973323_84976102_84976159_84976244
ENSMUSG00000019368.14_8	chr11	+	4479	13	NNC	ENSMUSG00000019368.14	novel	2956	12	NA	NA	13	4625	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	5.18009008930668	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTTACAAAATGGCTGTAA	NA	False	NA	NA	False	AATAAA	-15	NA	3981795	4002649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_3981900_3985122_3985199_3989435_3989480_3989770_3989831_3989936_3990126_3991736_3991833_3992190_3992252_3993286_3993371_3993652_3993760_3993832_3993973_3994063_3994234_3996212_3998944_4002032
ENSMUSG00000019368.14_9	chr11	+	2905	12	FSM	ENSMUSG00000019368.14	ENSMUST00000019512.8	2956	12	28	23	28	-23	multi-exon	FALSE	canonical	3	10	junction_7	3.13603423830188	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAGGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3981810	3998001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3981900_3985122_3985199_3989435_3989480_3989770_3989831_3989936_3990126_3991736_3991833_3992190_3992252_3993286_3993371_3993652_3993760_3993832_3993973_3994063_3994234_3996212
ENSMUSG00000019370.11_0	chr7	-	2145	6	FSM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	139	6	139	-6	multi-exon	FALSE	canonical	3	2296	junction_1	82.9925297843125	1290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACCTGTCTGGACTCTTC	NA	False	NA	-20	True	AATAAA	-9	NA	16657900	16649309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
ENSMUSG00000019370.11_8	chr7	-	1002	1	ISM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	7731	3	782	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTCTGGACTCTTCCGT	7190	False	NA	-17	True	AATAAA	-12	NA	16650308	16649306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_16649300_16650300
ENSMUSG00000019373.12_1	chr11	-	1582	12	FSM	ENSMUSG00000019373.12	ENSMUST00000019517.10	1646	12	53	11	27	-11	multi-exon	FALSE	canonical	3	608	junction_5	45.2577558304642	535	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCCTTGAATGTTAATGT	NA	False	NA	-15	True	ATTAAA	-16	NA	59730611	59708631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716_59727847_59730495
ENSMUSG00000019428.17_0	chr8	+	1683	9	FSM	ENSMUSG00000019428.17	ENSMUST00000075491.14	1698	9	11	4	-4	-4	multi-exon	FALSE	canonical	0	0	junction_1	448.998590615828	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTACTGCTTTCTAGGCC	NA	False	NA	21	True	AATAAA	-13	NA	70980407	70987972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUSG00000019428.17_2	chr8	+	1937	8	ISM	ENSMUSG00000019428.17	ENSMUST00000075491.14	1698	9	9	4	-6	-4	intron_retention	FALSE	canonical	0	0	junction_1	458.365107123755	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTACTGCTTTCTAGGCC	NA	False	NA	21	True	AATAAA	-13	NA	70980405	70987972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132
ENSMUSG00000019428.17_3	chr8	+	2524	8	NIC	ENSMUSG00000019428.17	novel	1698	9	NA	NA	4	-4	intron_retention	FALSE	canonical	0	0	junction_1	479.613790205309	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTACTGCTTTCTAGGCC	NA	False	NA	21	True	AATAAA	-13	NA	70980400	70987972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUSG00000019428.17_36	chr8	+	1785	9	NIC	ENSMUSG00000019428.17	novel	1799	9	NA	NA	6	-4	combination_of_known_junctions	FALSE	canonical	3	268	junction_4	413.857897562678	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTACTGCTTTCTAGGCC	NA	False	NA	21	True	AATAAA	-13	NA	70980501	70987972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984174_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUSG00000019428.17_37	chr8	+	1676	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	118	5	-45	-4	multi-exon	FALSE	canonical	3	550	junction_1	286.852068800279	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTACTGCTTTCTAGGCC	NA	False	NA	21	True	AATAAA	-13	NA	70980613	70987972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUSG00000019428.17_5	chr8	+	1687	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119353.9	1720	9	27	6	4	-4	multi-exon	FALSE	canonical	0	0	junction_1	528.343741682439	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTACTGCTTTCTAGGCC	NA	False	NA	21	True	AATAAA	-13	NA	70980400	70987972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984174_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUSG00000019428.17_78	chr8	+	1606	8	ISM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	1543	5	573	-4	3prime_fragment	FALSE	canonical	3	934	junction_3	172.710918081312	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTACTGCTTTCTAGGCC	NA	False	NA	21	True	AATAAA	-13	NA	70982038	70987972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUSG00000019429.8_0	chr7	-	1642	2	FSM	ENSMUSG00000019429.8	ENSMUST00000094583.2	1625	2	-16	-1	-16	1	multi-exon	FALSE	canonical	3	35	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAATAATGTTTCC	7650	False	NA	NA	False	AATAAA	-14	NA	30555619	30553753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30555330_30555553
ENSMUSG00000019429.8_1	chr7	-	1132	1	FSM	ENSMUSG00000019429.8	ENSMUST00000185748.2	1234	1	707	-605	707	1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAATAATGTTTCC	8384	False	NA	NA	False	AATAAA	-14	NA	30554885	30553753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30553800_30554900
ENSMUSG00000019432.16_0	chr17	+	1661	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	47	31	-12	0	multi-exon	FALSE	canonical	3	2129	junction_1	149.184985839729	2200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAACAACCGTGTCTGT	NA	False	NA	6	True	NA	NA	NA	35460768	35472652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ENSMUSG00000019432.16_79	chr17	+	1605	10	FSM	ENSMUSG00000019432.16	ENSMUST00000173731.8	2848	10	1241	2	444	2	multi-exon	FALSE	canonical	3	2134	junction_3	141.063246475377	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACAACCGTGTCTGTGG	NA	False	NA	8	True	NA	NA	NA	35462086	35472654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ENSMUSG00000019432.16_8	chr17	+	3840	10	NIC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-12	2	intron_retention	FALSE	canonical	3	2129	junction_1	153.609975884895	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACAACCGTGTCTGTGG	NA	False	NA	8	True	NA	NA	NA	35460768	35472654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ENSMUSG00000019433.10_0	chr8	+	1605	7	FSM	ENSMUSG00000019433.10	ENSMUST00000019577.10	1522	7	10	-93	1	93	multi-exon	FALSE	canonical	3	964	junction_1	101.245027312731	1118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTCCCTGCTCTCCCTGCT	NA	False	NA	19	True	NA	NA	NA	84379315	84391416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84379367_84387587_84387910_84388583_84388770_84388863_84389045_84389677_84389791_84390548_84390631_84390746
ENSMUSG00000019433.10_13	chr8	+	1534	6	ISM	ENSMUSG00000019433.10	ENSMUST00000019577.10	1522	7	8297	-88	8276	88	3prime_fragment	FALSE	canonical	3	1082	junction_2	62.0335393154381	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCACTCCCTGCTCTCC	NA	False	NA	14	True	NA	NA	NA	84387602	84391411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84387910_84388583_84388770_84388863_84389045_84389677_84389791_84390548_84390631_84390746
ENSMUSG00000019433.10_2	chr8	+	1697	6	NIC	ENSMUSG00000019433.10	novel	1522	7	NA	NA	1	91	intron_retention	FALSE	canonical	3	964	junction_1	105.526489565417	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTCCCTGCTCTCCCTG	NA	False	NA	17	True	NA	NA	NA	84379315	84391414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_84379367_84387587_84387910_84388583_84389045_84389677_84389791_84390548_84390631_84390746
ENSMUSG00000019437.18_1	chr11	+	1961	3	FSM	ENSMUSG00000019437.18_ENSMUSG00000099101.3	ENSMUST00000140379.2	408	3	-1159	-394	-16	5	multi-exon	FALSE	canonical	3	167	junction_1	12	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAAGTCCTGTTCTTGGG	NA	False	NA	NA	False	AATGAA	-6	NA	78068939	78071311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78070279_78070365_78070449_78070772
ENSMUSG00000019437.18_2	chr11	+	1010	5	NIC	ENSMUSG00000019437.18	novel	457	4	NA	NA	-16	3	intron_retention	FALSE	canonical	3	12	junction_1	80.151419201409	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGAAGTCCTGTTCTTG	NA	False	NA	NA	False	AATGAA	-4	NA	78068939	78071309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_78069063_78069863_78070048_78070195_78070279_78070365_78070449_78070772
ENSMUSG00000019437.18_3	chr11	+	2099	4	FSM	ENSMUSG00000019437.18	ENSMUST00000092880.14	2700	4	-537	1138	-16	-49	multi-exon	FALSE	canonical	3	28	junction_1	71.8532455000391	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAGCATGGGGACTGCAT	NA	False	NA	3	True	AATAAA	-15	NA	78068939	78071597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78070048_78070195_78070279_78070365_78070449_78070772
ENSMUSG00000019437.18_5	chr11	+	1039	4	FSM	ENSMUSG00000019437.18	ENSMUST00000127587.8	1412	4	31	342	-15	-2	multi-exon	FALSE	canonical	3	157	junction_1	14.2672897060218	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTCTCTGAAGTCCTGT	NA	False	NA	NA	False	AAAACA	-7	NA	78069541	78071304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78069883_78070195_78070279_78070365_78070449_78070772
ENSMUSG00000019437.18_7	chr11	+	3795	1	FSM	ENSMUSG00000099101.3	ENSMUST00000184358.3	61	1	-114	-3620	-114	3620	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTAAATAAAAAAACAAATAA	NA	False	NA	NA	False	NA	NA	NA	78069538	78073333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78069500_78073300
ENSMUSG00000019437.18_8	chr11	+	749	3	FSM	ENSMUSG00000019437.18	ENSMUST00000108338.2	714	3	-38	3	-7	-3	multi-exon	FALSE	canonical	3	157	junction_1	5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTGGTGTTCCTCAGCT	NA	False	NA	NA	False	AATAAA	-15	NA	78069549	78070698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78069883_78070195_78070279_78070365
ENSMUSG00000019461.13_0	chr11	+	1971	7	FSM	ENSMUSG00000019461.13	ENSMUST00000019605.4	1927	7	-51	7	8	0	multi-exon	FALSE	canonical	3	67	junction_4	3.33749739908346	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTAGAAGCCGGATGT	NA	False	NA	15	True	TATAAA	-15	NA	69737450	69741862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
ENSMUSG00000019461.13_1	chr11	+	1664	8	NNC	ENSMUSG00000019461.13	novel	2785	8	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	22.8963948681705	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTAGAAGCCGGATGT	NA	False	NA	15	True	TATAAA	-15	NA	69737455	69741862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_69737518_69737819_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
ENSMUSG00000019461.13_10	chr11	+	1762	8	NNC	ENSMUSG00000019461.13	novel	2785	8	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	23.9369921217503	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACAGTAGAAGCCGGATG	NA	False	NA	14	True	TATAAA	-14	NA	69737448	69741861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_69737518_69737727_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
ENSMUSG00000019461.13_3	chr11	+	1754	8	FSM	ENSMUSG00000019461.13	ENSMUST00000108633.9	2785	8	9	1022	9	0	multi-exon	FALSE	canonical	3	60	junction_1	4.6246897303539	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTAGAAGCCGGATGT	NA	False	NA	15	True	TATAAA	-15	NA	69737451	69741862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69737518_69737733_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
ENSMUSG00000019461.13_6	chr11	+	1849	7	NIC	ENSMUSG00000019461.13	novel	2785	8	NA	NA	7	-10	intron_retention	FALSE	canonical	3	60	junction_1	4.99165971062398	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACTTTTTAAACAGTAGA	NA	False	NA	5	True	TATAAA	-5	NA	69737449	69741852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_69737518_69737733_69737902_69738160_69738400_69738482_69738850_69739039_69739202_69740837_69741000_69741169
ENSMUSG00000019467.16_13	chr10	-	2831	13	NIC	ENSMUSG00000019467.16	novel	2475	15	NA	NA	-27	0	intron_retention	FALSE	canonical	3	18	junction_12	9.10547759440559	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTGAGGTTGTTGTCTT	6157	False	NA	-7	True	AATAAA	-12	NA	127024668	127018397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127024119
ENSMUSG00000019467.16_16	chr10	-	3538	13	NIC	ENSMUSG00000019467.16	novel	2189	16	NA	NA	-26	0	intron_retention	FALSE	canonical	3	18	junction_8	9.10547759440559	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCACTGAGGTTGTTGTC	6158	False	NA	-9	True	AATAAA	-10	NA	127024667	127018399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976
ENSMUSG00000019467.16_3	chr10	-	2179	14	ISM	ENSMUSG00000019467.16	ENSMUST00000218654.2	2475	15	1224	0	-325	0	3prime_fragment	FALSE	canonical	3	18	junction_9	9.13864283684445	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGGTTGTTGTCTTGGG	7408	False	NA	-4	True	AATAAA	-15	NA	127023417	127018394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021042_127021155_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976
ENSMUSG00000019467.16_4	chr10	-	2623	14	NIC	ENSMUSG00000019467.16	novel	2475	15	NA	NA	-34	0	intron_retention	FALSE	canonical	3	18	junction_8	9.21922354866377	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGGTTGTTGTCTTGGG	6150	False	NA	-4	True	AATAAA	-15	NA	127024675	127018394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127024119
ENSMUSG00000019467.16_5	chr10	-	2492	15	FSM	ENSMUSG00000019467.16	ENSMUST00000218654.2	2475	15	-21	4	-21	-1	multi-exon	FALSE	canonical	3	18	junction_9	9.18628080901302	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCACTGAGGTTGTTGTCT	6163	False	NA	-8	True	AATAAA	-11	NA	127024662	127018398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021042_127021155_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127024119
ENSMUSG00000019467.16_6	chr10	-	2859	13	NIC	ENSMUSG00000019467.16	novel	2475	15	NA	NA	-31	0	intron_retention	FALSE	canonical	3	18	junction_7	9.55539405548277	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGGTTGTTGTCTTGGG	6153	False	NA	-4	True	AATAAA	-15	NA	127024672	127018394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127018813_127019066_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127024119
ENSMUSG00000019467.16_7	chr10	-	2219	16	FSM	ENSMUSG00000019467.16	ENSMUST00000019611.15	2218	16	-3	2	-3	0	multi-exon	FALSE	canonical	1	3	junction_14	11.8291541916102	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCACTGAGGTTGTTGTC	4934	False	NA	-9	True	AATAAA	-10	NA	127025891	127018399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021042_127021155_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127025363_127025479_127025735
ENSMUSG00000019467.16_8	chr10	-	3753	12	ISM	ENSMUSG00000019467.16	ENSMUST00000219649.2	2571	14	1243	4	-21	0	3prime_fragment	FALSE	canonical	3	19	junction_9	8.86724868116112	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTGAGGTTGTTGTCTT	6163	False	NA	-7	True	AATAAA	-12	NA	127024662	127018397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976
ENSMUSG00000019470.13_0	chr8	-	2654	19	FSM	ENSMUSG00000019470.13	ENSMUST00000019614.13	2677	19	20	3	6	0	multi-exon	FALSE	canonical	3	374	junction_12	44.2084358744927	748	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCCGGTCTTGACCTCC	1031	False	NA	-7	True	AATACA	-13	NA	3671296	3660089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
ENSMUSG00000019471.11_4	chr9	-	1600	8	FSM	ENSMUSG00000019471.11	ENSMUST00000019615.11	7851	8	41	6210	1	1521	multi-exon	FALSE	canonical	3	1564	junction_6	89.7352113903194	1592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCGCTGGTTCAGTGCTG	NA	False	NA	-9	True	AATAAA	-17	NA	21061237	21050727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
ENSMUSG00000019471.11_5	chr9	-	1747	8	NIC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	1	1521	combination_of_known_junctions	FALSE	canonical	3	62	junction_6	586.784875227641	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCGCTGGTTCAGTGCTG	NA	False	NA	-9	True	AATAAA	-17	NA	21061237	21050727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053974_21054242_21054522_21061051
ENSMUSG00000019478.18_0	chr8	+	1358	8	NIC	ENSMUSG00000019478.18	novel	1419	8	NA	NA	24	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	159.435483721121	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTACACTGTCCTGCTCT	NA	False	NA	13	True	AATAAA	-22	NA	124532747	124562027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124557009_124557127_124559541_124559638_124560753_124560887_124561432
ENSMUSG00000019478.18_1	chr8	+	1390	8	FSM	ENSMUSG00000019478.18	ENSMUST00000118535.9	1419	8	26	3	26	-3	multi-exon	FALSE	canonical	0	0	junction_5	133.326360361884	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCACAGTACACTGTCCTG	NA	False	NA	9	True	AATAAA	-18	NA	124532749	124562023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124556971_124557127_124559541_124559638_124560753_124560887_124561432
ENSMUSG00000019487.12_0	chr17	+	1989	14	FSM	ENSMUSG00000019487.12	ENSMUST00000224947.2	2016	14	20	7	-7	-7	multi-exon	FALSE	canonical	3	136	junction_12	68.855048845232	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAAAGTTCTTGGAGTCT	NA	False	NA	6	True	ATTAAA	-16	NA	57556474	57570420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569353_57569473_57569999
ENSMUSG00000019487.12_1	chr17	+	1982	14	FSM	ENSMUSG00000019487.12	ENSMUST00000019631.11	2224	14	-6	248	-6	-10	multi-exon	FALSE	canonical	3	302	junction_12	30.2353686068634	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATATAAAGTTCTTGGAG	NA	False	NA	3	True	ATTAAA	-13	NA	57556475	57570417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569356_57569473_57569999
ENSMUSG00000019494.15_0	chr5	+	1091	10	FSM	ENSMUSG00000019494.15	ENSMUST00000019638.15	1787	10	30	666	1	2	multi-exon	FALSE	canonical	3	3954	junction_1	284.410501446999	2372	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCCCTTCCAGTGGCTT	NA	False	NA	13	True	AATAAA	-14	NA	138159362	138162242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138159445_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
ENSMUSG00000019505.8_0	chr11	+	1157	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	335	7	-170	-7	multi-exon	FALSE	canonical	3	35417	junction_1	0	17713	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATATATGGTGTCACTT	NA	False	NA	18	True	AATAAA	-17	NA	62442331	62444032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62442422_62442965
ENSMUSG00000019518.12_0	chr5	+	3350	15	FSM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	123	6	57	-6	multi-exon	FALSE	canonical	3	48	junction_6	9.89356624586021	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGGTATGGTGGTGCATT	8200	False	NA	12	True	NA	NA	NA	138170386	138178685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
ENSMUSG00000019518.12_34	chr5	+	2229	2	ISM	ENSMUSG00000019518.12	ENSMUST00000134100.2	959	5	1525	-1731	1525	-11	3prime_fragment	FALSE	canonical	3	83	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCAGTGGGTATGGTGGT	4191	False	NA	7	True	NA	NA	NA	138176355	138178680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_138176443_138176538
ENSMUSG00000019518.12_35	chr5	+	1704	1	ISM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	6718	6	2151	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGGTATGGTGGTGCATT	4817	False	NA	12	True	NA	NA	NA	138176981	138178685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_138177000_138178700
ENSMUSG00000019518.12_4	chr5	+	3546	14	NIC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	19	-6	intron_retention	TRUE	canonical	3	48	junction_6	10.1742219800537	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGGTATGGTGGTGCATT	8099	False	NA	12	True	NA	NA	NA	138170285	138178685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176443_138176538
ENSMUSG00000019528.19_0	chr3	-	1664	7	FSM	ENSMUSG00000019528.19	ENSMUST00000178328.8	1698	7	32	2	5	-2	multi-exon	FALSE	canonical	3	45	junction_2	8.93805845186128	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATATCTTGGTTGTTTAAG	NA	False	NA	-7	True	AATAAA	-10	NA	20209228	20176252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_20177029_20179421_20179642_20192180_20192308_20204702_20204866_20205116_20205292_20206893_20207030_20209161
ENSMUSG00000019528.19_3	chr3	-	108	1	ISM	ENSMUSG00000019528.19	ENSMUST00000118015.9	1922	7	33125	1	1351	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGGTTGTTTAAGTACT	NA	False	NA	-3	True	AATAAA	-14	NA	20176356	20176248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_20176200_20176400
ENSMUSG00000019539.12_0	chr7	-	1412	7	FSM	ENSMUSG00000019539.12	ENSMUST00000211352.2	1453	7	32	9	-4	-9	multi-exon	FALSE	canonical	3	54	junction_6	48.2482008875864	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGCTCTGTCTGTCTGT	6692	False	NA	-13	True	AATAAA	-16	NA	44741613	44732345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741528
ENSMUSG00000019539.12_1	chr7	-	1402	7	FSM	ENSMUSG00000019539.12	ENSMUST00000019683.11	1462	7	50	10	14	-10	multi-exon	FALSE	canonical	3	94	junction_6	35.1362427637839	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTGCTCTGTCTGTCTG	6710	False	NA	-14	True	AATAAA	-15	NA	44741595	44732346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741519
ENSMUSG00000019539.12_4	chr7	-	1364	7	NIC	ENSMUSG00000019539.12	novel	1453	7	NA	NA	-12	-10	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	63.9463751035889	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTGCTCTGTCTGTCTG	6684	False	NA	-14	True	AATAAA	-15	NA	44741621	44732346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741583
ENSMUSG00000019558.15_0	chrX	+	3928	13	FSM	ENSMUSG00000019558.15	ENSMUST00000114465.9	3314	13	-618	4	17	-4	multi-exon	FALSE	canonical	3	360	junction_3	45.3026857187665	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGGCTCCTGTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	72716772	72726104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72717657_72719243_72719376_72720255_72720506_72720926_72721060_72722241_72722377_72722471_72722576_72722669_72722795_72723290_72723404_72723524_72723663_72723737_72723841_72723937_72724039_72724110_72724282_72724565
ENSMUSG00000019558.15_5	chrX	+	4348	12	NIC	ENSMUSG00000019558.15	novel	3314	13	NA	NA	18	-4	intron_retention	FALSE	canonical	3	365	junction_8	42.9568301460705	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGGCTCCTGTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	72716773	72726104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_72717657_72719243_72719376_72720255_72721060_72722241_72722377_72722471_72722576_72722669_72722795_72723290_72723404_72723524_72723663_72723737_72723841_72723937_72724039_72724110_72724282_72724565
ENSMUSG00000019558.15_56	chrX	+	1280	1	ISM	ENSMUSG00000019558.15	ENSMUST00000033752.14	3964	13	8069	4	2326	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGGCTCCTGTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	72724824	72726104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72724800_72726100
ENSMUSG00000019564.13_0	chr10	+	2964	9	FSM	ENSMUSG00000019564.13	ENSMUST00000019708.12	5361	9	22	2375	22	0	multi-exon	FALSE	canonical	3	22	junction_1	9.40661336507459	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAGAAAAGCAAAA	1869	False	NA	NA	False	NA	NA	NA	79762898	79788477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79763091_79766468_79767123_79767599_79767913_79782318_79782392_79784693_79784878_79785198_79785447_79786461_79786759_79787081_79787181_79787573
ENSMUSG00000019564.13_1	chr10	+	2406	9	FSM	ENSMUSG00000019564.13	ENSMUST00000105376.2	4892	9	-18	2504	-18	-444	multi-exon	FALSE	canonical	3	17	junction_1	10.5089247784919	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAATCTCTCAGGTTTC	2127	False	NA	NA	False	AATAAA	-20	NA	79763156	79788033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79763235_79766468_79767123_79767599_79767913_79782318_79782392_79784693_79784878_79785198_79785447_79786461_79786759_79787081_79787181_79787573
ENSMUSG00000019564.13_3	chr10	+	2648	1	ISM	ENSMUSG00000019564.13	ENSMUST00000019708.12	5361	9	25313	15	6077	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTCTGTGAAAGAAGAGTG	7033	False	NA	-6	True	ATTAAA	-11	NA	79788189	79790837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79788200_79790800
ENSMUSG00000019577.7_0	chr6	-	3525	11	FSM	ENSMUSG00000019577.7	ENSMUST00000019721.7	3484	11	-47	6	-47	-6	multi-exon	FALSE	canonical	2	10	junction_7	4.42831796509691	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTAATGTGGTCTTATA	NA	False	NA	NA	False	AATAAA	-13	NA	5496356	5483356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_5485593_5486677_5486792_5487063_5487175_5487378_5487478_5489134_5489212_5491069_5491148_5491590_5491678_5491829_5492015_5492705_5492778_5494889_5495032_5496032
ENSMUSG00000019577.7_2	chr6	-	1610	1	ISM	ENSMUSG00000019577.7	ENSMUST00000019721.7	3484	11	11343	6	11295	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTAATGTGGTCTTATA	6715	False	NA	NA	False	AATAAA	-13	NA	5484966	5483356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_5483400_5485000
ENSMUSG00000019578.12_0	chr17	-	1696	11	FSM	ENSMUSG00000019578.12	ENSMUST00000019722.12	2949	11	38	1215	27	-10	multi-exon	FALSE	canonical	3	209	junction_10	25.0960156200143	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAACTCAGCCTCCCAG	6344	False	NA	-12	True	AATAAA	-7	NA	56381990	56375259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651_56377728_56377887_56377986_56379400_56379530_56379719_56379785_56380072_56380237_56381835
ENSMUSG00000019579.14_2	chr17	-	889	6	FSM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	17	804	17	-804	multi-exon	FALSE	canonical	3	1137	junction_1	57.4505004329814	511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGAGATGGATTCTCAT	NA	False	NA	-7	True	AATAAA	-42	NA	56490903	56483547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
ENSMUSG00000019590.17_0	chr11	-	2480	6	FSM	ENSMUSG00000019590.17	ENSMUST00000019734.11	2741	6	259	2	-14	-2	multi-exon	FALSE	canonical	3	87	junction_5	37.6690854680599	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGCTTGCCTTCTGTCTTC	NA	False	NA	-6	True	AATAAA	-13	NA	105834979	105824529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105834936
ENSMUSG00000019590.17_13	chr11	-	2437	5	ISM	ENSMUSG00000019590.17	ENSMUST00000019734.11	2741	6	6570	4	-44	-4	3prime_fragment	FALSE	canonical	3	172	junction_2	7.29297607290741	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCGCTTGCCTTCTGTCT	NA	False	NA	-8	True	AATAAA	-11	NA	105828668	105824531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454
ENSMUSG00000019590.17_14	chr11	-	2521	6	FSM	ENSMUSG00000019590.17	ENSMUST00000184086.8	1130	6	-11	-1380	-11	-2	multi-exon	FALSE	canonical	3	6	junction_2	71.4898594207598	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGCTTGCCTTCTGTCTTC	NA	False	NA	-6	True	AATAAA	-13	NA	105834976	105824529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_105826394_105826577_105826780_105827007_105827112_105827380_105827480_105828454_105828667_105834936
ENSMUSG00000019590.17_5	chr11	-	1651	1	ISM	ENSMUSG00000019590.17	ENSMUST00000019734.11	2741	6	9058	2	823	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGCTTGCCTTCTGTCTTC	NA	False	NA	-6	True	AATAAA	-13	NA	105826180	105824529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_105824500_105826200
ENSMUSG00000019590.17_6	chr11	-	2760	7	NIC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-16	-3	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	64.1320252811859	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCGCTTGCCTTCTGTCTT	NA	False	NA	-7	True	AATAAA	-12	NA	105834981	105824530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831205_105834936
ENSMUSG00000019590.17_7	chr11	-	2718	6	NIC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-2582	-2	combination_of_known_junctions	FALSE	canonical	3	69	junction_5	44.777673007873	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGCTTGCCTTCTGTCTTC	NA	False	NA	-6	True	AATAAA	-13	NA	105831206	105824529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925
ENSMUSG00000019647.17_0	chr18	-	4705	19	FSM	ENSMUSG00000019647.17	ENSMUST00000019791.14	6856	19	-39	2190	-1	-4	multi-exon	FALSE	canonical	0	0	junction_1	1.06138739858571	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATTTGGAGCTGGAAT	NA	False	NA	NA	False	AATAAA	-11	NA	47501936	47380510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_47382652_47403675_47403841_47409652_47409674_47412182_47412242_47414186_47414268_47414358_47414500_47414861_47415039_47416375_47416532_47420489_47420622_47423042_47423261_47424162_47424252_47424954_47425075_47427086_47427178_47431252_47431355_47432143_47432207_47433150_47433212_47437170_47437289_47439422_47439561_47501304
ENSMUSG00000019659.9_0	chr9	+	785	7	FSM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	33	16	-2	3	multi-exon	FALSE	canonical	3	695	junction_3	22.4258035902098	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGCCTGTTGTTTCATTT	8515	False	NA	13	True	AATAAA	-13	NA	110485603	110540658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110485727_110521383_110521452_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
ENSMUSG00000019689.5_1	chr6	+	446	2	FSM	ENSMUSG00000019689.5	ENSMUST00000019833.5	479	2	31	2	31	-1	multi-exon	FALSE	canonical	3	741	junction_1	0	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTTGGTTTTTGTGTG	9960	False	NA	7	True	ATTAAA	-15	NA	38511788	38516382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_38511946_38516093
ENSMUSG00000019699.17_14	chr1	-	3802	5	ISM	ENSMUSG00000019699.17	ENSMUST00000111160.9	4735	13	189372	1	189372	0	3prime_fragment	FALSE	canonical	3	19	junction_3	2.69258240356725	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTCTGTTTGTTGTTG	NA	False	NA	-8	True	AATAAA	-18	NA	176886961	176849681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_176853016_176859215_176859319_176871340_176871429_176877603_176877819_176886899
ENSMUSG00000019699.17_19	chr1	-	6882	13	FSM	ENSMUSG00000019699.17	ENSMUST00000111160.9	4735	13	-115	-2032	-77	-10	multi-exon	FALSE	canonical	3	18	junction_7	3.523729085311	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGATCATGGGTATTTG	NA	False	NA	NA	False	AATAAA	-11	NA	177076448	176847648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_176853016_176859215_176859319_176871340_176871429_176877603_176877819_176886899_176887029_176894776_176894900_176906339_176906409_176907766_176907833_176924532_176924665_176930527_176930673_176937192_176937305_176958536_176958663_177076241
ENSMUSG00000019699.17_3	chr1	-	5106	14	FSM	ENSMUSG00000019699.17	ENSMUST00000111159.2	4906	14	-203	3	-203	-3	multi-exon	FALSE	canonical	3	17	junction_13	3.68910117177901	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGCTTCTCTGTTTGTTG	NA	False	NA	-11	True	AATAAA	-15	NA	177085972	176849684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_176853016_176859215_176859319_176871340_176871429_176877603_176877819_176886899_176887029_176894776_176894900_176906339_176906409_176907766_176907833_176924532_176924665_176930527_176930673_176937192_176937305_176958536_176958663_177076241_177076448_177085711
ENSMUSG00000019699.17_4	chr1	-	4996	14	NIC	ENSMUSG00000019699.17	novel	4906	14	NA	NA	2	5	combination_of_known_junctions	FALSE	canonical	1	1	junction_13	6.65462423196374	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGTTGTTGTTGGAT	NA	False	NA	-2	True	AATAAA	-24	NA	177085156	176849675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_176853016_176859215_176859319_176871340_176871429_176877603_176877819_176886899_176887029_176894776_176894900_176906339_176906409_176907766_176907833_176924532_176924665_176930527_176930673_176937192_176937305_176958536_176958663_177076241_177076448_177085014
ENSMUSG00000019699.17_5	chr1	-	4552	12	ISM	ENSMUSG00000019699.17	ENSMUST00000111160.9	4735	13	117761	1	117761	0	3prime_fragment	FALSE	canonical	3	18	junction_7	3.51149234833236	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTCTGTTTGTTGTTG	NA	False	NA	-8	True	AATAAA	-18	NA	176958572	176849681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_176853016_176859215_176859319_176871340_176871429_176877603_176877819_176886899_176887029_176894776_176894900_176906339_176906409_176907766_176907833_176924532_176924665_176930527_176930673_176937192_176937305_176958536
ENSMUSG00000019699.17_8	chr1	-	3785	8	ISM	ENSMUSG00000019699.17	ENSMUST00000111160.9	4735	13	168526	318	168526	-317	3prime_fragment	FALSE	canonical	3	18	junction_7	2.50713268211203	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCGAGTCACCTCCCTGTA	NA	False	NA	-1	True	AATAAA	-21	NA	176907807	176849998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_176853016_176859215_176859319_176871340_176871429_176877603_176877819_176886899_176887029_176894776_176894900_176906339_176906409_176907766
ENSMUSG00000019710.14_1	chr3	+	939	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	171	229	114	-229	multi-exon	FALSE	canonical	3	595	junction_1	165.189103756876	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGTTGTCCACACTACCC	NA	False	NA	36	True	AATAAA	-14	NA	87826983	87830740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_13	chr3	+	974	7	NIC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	9	-229	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	348.953992510315	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGTTGTCCACACTACCC	NA	False	NA	36	True	AATAAA	-14	NA	87826851	87830740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87827013_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_5	chr3	+	1801	4	NIC	ENSMUSG00000019710.14	novel	1234	5	NA	NA	-713	-218	intron_retention	FALSE	canonical	3	982	junction_1	30.7354301526214	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTACCCCTCTGCCTCTC	NA	False	NA	47	True	AATAAA	-25	NA	87828202	87830751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_6	chr3	+	897	6	FSM	ENSMUSG00000019710.14	ENSMUST00000121920.8	1115	6	-21	239	6	-229	multi-exon	FALSE	canonical	3	127	junction_1	351.330841230883	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGTTGTCCACACTACCC	NA	False	NA	36	True	AATAAA	-14	NA	87826848	87830740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_8	chr3	+	949	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	38	239	8	-229	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGTTGTCCACACTACCC	NA	False	NA	36	True	AATAAA	-14	NA	87826850	87830740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_9	chr3	+	2456	5	FSM	ENSMUSG00000019710.14	ENSMUST00000121048.2	1234	5	-1461	239	585	-229	multi-exon	FALSE	canonical	3	982	junction_2	28.5744641244591	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGTTGTCCACACTACCC	NA	False	NA	36	True	AATAAA	-14	NA	87827454	87830740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019715.15_0	chr2	+	3043	16	FSM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	30	957	28	-957	multi-exon	FALSE	canonical	3	458	junction_9	44.6713430387859	881	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTCTGTCCTGATATG	NA	False	NA	2	True	AATAAA	-12	NA	29825467	29849426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
ENSMUSG00000019718.9_3	chr12	-	1741	5	FSM	ENSMUSG00000019718.9	ENSMUST00000019862.3	1831	5	24	66	24	-66	multi-exon	FALSE	canonical	3	12	junction_4	3.20156211871642	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCATGCTCATAGAGGTG	NA	False	NA	NA	False	AATAAA	-12	NA	72132189	72120267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_72120811_72123917_72124056_72124137_72124261_72126260_72126431_72131422
ENSMUSG00000019718.9_5	chr12	-	903	1	NIC	ENSMUSG00000019718.9	novel	1831	5	NA	NA	24	-7249	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACGCTTCAGTGTCTTT	NA	False	NA	-3	True	AATAAA	-22	NA	72132189	72131286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_72131300_72132200
ENSMUSG00000019726.13_0	chr13	+	5520	3	ISM	ENSMUSG00000019726.13	ENSMUST00000223053.2	2706	5	-26	14405	-26	-14405	5prime_fragment	FALSE	canonical	1	4	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAAGTCTTTCTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	13764955	13796439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13765082_13788426_13788513_13791131
ENSMUSG00000019726.13_12	chr13	+	3692	14	ISM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	135425	15	16471	-15	3prime_fragment	FALSE	canonical	1	3	junction_2	5.19786027893112	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAGACTTAAACCTGT	NA	False	NA	NA	False	AATAAA	-7	NA	13900406	13953373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13900644_13903149_13903217_13904909_13905067_13915049_13915191_13917824_13918043_13921156_13921388_13926527_13926718_13931895_13932033_13933962_13934062_13935290_13935431_13935688_13935787_13950054_13950212_13950598_13950671_13951625
ENSMUSG00000019726.13_13	chr13	+	2810	9	ISM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	156237	15	-102	-15	3prime_fragment	FALSE	canonical	2	10	junction_4	4.67540105231626	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAGACTTAAACCTGT	NA	False	NA	NA	False	AATAAA	-7	NA	13921218	13953373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13921388_13926527_13926718_13931895_13932033_13933962_13934062_13935290_13935431_13935688_13935787_13950054_13950212_13950598_13950671_13951625
ENSMUSG00000019726.13_16	chr13	+	1968	3	ISM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	185082	15	14710	-15	3prime_fragment	FALSE	canonical	3	13	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAGACTTAAACCTGT	NA	False	NA	NA	False	AATAAA	-7	NA	13950063	13953373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13950212_13950598_13950671_13951625
ENSMUSG00000019726.13_17	chr13	+	1429	1	ISM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	186963	15	16591	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAGACTTAAACCTGT	NA	False	NA	NA	False	AATAAA	-7	NA	13951944	13953373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13951900_13953400
ENSMUSG00000019726.13_20	chr13	+	5750	28	ISM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	90932	5	-2762	-5	3prime_fragment	FALSE	canonical	1	1	junction_2	4.8022628411054	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAACCTGTATAAATGACT	NA	False	NA	NA	False	AATAAA	-17	NA	13855913	13953383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13856108_13857639_13857807_13858542_13858687_13862203_13862396_13871194_13871374_13872911_13873119_13881086_13881264_13882203_13882281_13882606_13882796_13883872_13884019_13884098_13884196_13885308_13885371_13886202_13886259_13887292_13887446_13900398_13900644_13903149_13903217_13904909_13905067_13915049_13915191_13917824_13918043_13921156_13921388_13926527_13926718_13931895_13932033_13933962_13934062_13935290_13935431_13935688_13935787_13950054_13950212_13950598_13950671_13951625
ENSMUSG00000019726.13_24	chr13	+	4109	18	ISM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	119076	15	122	-15	3prime_fragment	FALSE	canonical	1	3	junction_6	4.95935033137835	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAGACTTAAACCTGT	NA	False	NA	NA	False	AATAAA	-7	NA	13884057	13953373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13884196_13885308_13885371_13886202_13886259_13887292_13887446_13900398_13900644_13903149_13903217_13904909_13905067_13915049_13915191_13917824_13918043_13921156_13921388_13926527_13926718_13931895_13932033_13933962_13934062_13935290_13935431_13935688_13935787_13950054_13950212_13950598_13950671_13951625
ENSMUSG00000019726.13_3	chr13	+	8129	39	ISM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	66440	15	16926	-15	3prime_fragment	TRUE	canonical	1	1	junction_13	4.59080437010149	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAGACTTAAACCTGT	5965	False	NA	NA	False	AATAAA	-7	NA	13831421	13953373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13831580_13833181_13833373_13835512_13835759_13838524_13838699_13844424_13844575_13845387_13845526_13847840_13848040_13848914_13849047_13852233_13852850_13853547_13853726_13854657_13854828_13855876_13856108_13857639_13857807_13858542_13858687_13862203_13862396_13871194_13871374_13872911_13873119_13881086_13881264_13882203_13882281_13882606_13882796_13883872_13884019_13884098_13884196_13885308_13885371_13886202_13886259_13887292_13887446_13900398_13900644_13903149_13903217_13904909_13905067_13915049_13915191_13917824_13918043_13921156_13921388_13926527_13926718_13931895_13932033_13933962_13934062_13935290_13935431_13935688_13935787_13950054_13950212_13950598_13950671_13951625
ENSMUSG00000019726.13_5	chr13	+	6438	31	ISM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	87555	15	-6139	-15	3prime_fragment	FALSE	canonical	1	1	junction_5	4.67154506917501	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAGACTTAAACCTGT	6948	False	NA	NA	False	AATAAA	-7	NA	13852536	13953373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13852850_13853547_13853726_13854657_13854828_13855876_13856108_13857639_13857807_13858542_13858687_13862203_13862396_13871194_13871374_13872911_13873119_13881086_13881264_13882203_13882281_13882606_13882796_13883872_13884019_13884098_13884196_13885308_13885371_13886202_13886259_13887292_13887446_13900398_13900644_13903149_13903217_13904909_13905067_13915049_13915191_13917824_13918043_13921156_13921388_13926527_13926718_13931895_13932033_13933962_13934062_13935290_13935431_13935688_13935787_13950054_13950212_13950598_13950671_13951625
ENSMUSG00000019731.14_0	chr8	-	4378	6	FSM	ENSMUSG00000019731.14	ENSMUST00000152080.8	4383	6	0	5	0	-5	multi-exon	FALSE	canonical	3	222	junction_3	20.3901937214927	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGGGTTGGAGTTTGGTT	NA	False	NA	-11	True	AATAAA	-10	NA	73246458	73234489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_73237838_73238504_73238751_73241964_73242091_73243295_73243434_73245685_73245757_73246009
ENSMUSG00000019731.14_1	chr8	-	2195	1	ISM	ENSMUSG00000019731.14	ENSMUST00000152080.8	4383	6	9776	3	9379	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGGTTGGAGTTTGGTTCT	NA	False	NA	-9	True	AATAAA	-12	NA	73236682	73234487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_73234500_73236700
ENSMUSG00000019732.15_0	chr8	-	1636	9	FSM	ENSMUSG00000019732.15	ENSMUST00000019876.12	1769	9	131	2	131	-2	multi-exon	FALSE	canonical	3	18	junction_4	4.64858849544676	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTTAAAAATATTTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	73197583	73178021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_73178600_73179610_73179704_73181005_73181138_73181913_73182010_73185216_73185406_73188633_73188729_73192275_73192480_73197238_73197341_73197436
ENSMUSG00000019734.17_0	chr7	-	2270	15	FSM	ENSMUSG00000019734.17	ENSMUST00000038743.15	2310	15	38	2	9	-1	multi-exon	FALSE	canonical	3	9	junction_12	9.74077271376478	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTTGCGTTTTGAAACCC	5436	False	NA	-14	True	AATAAA	-14	NA	3680514	3668790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3673041_3673936_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678082_3678424_3678571_3679562_3679768_3680422
ENSMUSG00000019734.17_5	chr7	-	3171	14	NIC	ENSMUSG00000019734.17	novel	2310	15	NA	NA	3	-2	intron_retention	FALSE	canonical	3	9	junction_11	9.97037030524286	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCTTTGCGTTTTGAAACC	5430	False	NA	-15	True	AATAAA	-13	NA	3680520	3668791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678082_3678424_3678571_3679562_3679768_3680422
ENSMUSG00000019737.15_10	chr7	+	2271	6	NIC	ENSMUSG00000019737.15	novel	1006	7	NA	NA	-26	0	intron_retention	FALSE	canonical	3	156	junction_2	32.932658562588	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATGTCTGAGAATATC	NA	False	NA	5	True	ATTAAA	-12	NA	30014269	30018465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30017468_30018097_30018157_30018248
ENSMUSG00000019737.15_2	chr7	+	1331	8	FSM	ENSMUSG00000019737.15	ENSMUST00000054594.15	1355	8	18	6	18	0	multi-exon	FALSE	canonical	3	130	junction_4	40.5593543401494	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATGTCTGAGAATATC	NA	False	NA	5	True	ATTAAA	-12	NA	30014258	30018465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
ENSMUSG00000019737.15_4	chr7	+	1092	7	FSM	ENSMUSG00000019737.15	ENSMUST00000176304.8	1006	7	-92	6	8	0	multi-exon	FALSE	canonical	3	23	junction_4	73.2385751423994	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATGTCTGAGAATATC	NA	False	NA	5	True	ATTAAA	-12	NA	30014248	30018465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30017392_30017468_30018097_30018157_30018248
ENSMUSG00000019737.15_6	chr7	+	2206	7	NIC	ENSMUSG00000019737.15	novel	1355	8	NA	NA	19	0	intron_retention	FALSE	canonical	3	130	junction_4	40.3460723683924	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATGTCTGAGAATATC	NA	False	NA	5	True	ATTAAA	-12	NA	30014259	30018465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30017468_30018097_30018157_30018248
ENSMUSG00000019737.15_8	chr7	+	1272	8	NIC	ENSMUSG00000019737.15	novel	1355	8	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	69.7438461918516	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATGTCTGAGAATATC	NA	False	NA	5	True	ATTAAA	-12	NA	30014252	30018465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30014512_30014686_30014826_30015719_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
ENSMUSG00000019737.15_9	chr7	+	2221	6	NIC	ENSMUSG00000019737.15	novel	1006	7	NA	NA	14	0	intron_retention	FALSE	canonical	3	23	junction_2	79.8288168520616	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATGTCTGAGAATATC	NA	False	NA	5	True	ATTAAA	-12	NA	30014254	30018465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30014512_30014686_30014826_30015719_30015799_30015997_30017468_30018097_30018157_30018248
ENSMUSG00000019738.16_2	chr7	+	817	6	FSM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	-2	4	-2	0	multi-exon	FALSE	canonical	3	1146	junction_5	44.9239357136037	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGTTTCCCGTGTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29931370	29932811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUSG00000019738.16_4	chr7	+	803	6	NIC	ENSMUSG00000019738.16	novel	819	6	NA	NA	-16	1	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	481.665610148784	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTAGTGTTTCCCGTGTT	NA	False	NA	12	True	AATAAA	-12	NA	29931356	29932809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29931804_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUSG00000019761.11_0	chr11	-	528	2	ISM	ENSMUSG00000019761.11	ENSMUST00000103131.5	2094	8	3282	7	15	6	3prime_fragment	FALSE	canonical	3	82	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAATCTGTCAGAATTA	8354	False	NA	NA	False	AATAAA	-31	NA	99276908	99276086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_99276463_99276756
ENSMUSG00000019763.12_1	chr10	-	1820	13	FSM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	57	1262	3	-6	multi-exon	FALSE	canonical	3	107	junction_3	17.5220099684178	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAATGATCCTTTCAGCT	5719	False	NA	-11	True	NA	NA	NA	4382331	4353176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
ENSMUSG00000019763.12_38	chr10	-	2520	3	FSM	ENSMUSG00000019763.12	ENSMUST00000156940.8	1772	3	18	-766	8	766	multi-exon	FALSE	canonical	3	145	junction_2	8	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCTTTTCCAATGTCTG	5724	False	NA	NA	False	AATAGA	-14	NA	4382326	4375327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_4377692_4379076_4379172_4382265
ENSMUSG00000019763.12_39	chr10	-	3019	1	NIC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	4748	1565	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	9910	False	NA	NA	False	NA	NA	NA	4377547	4374528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_4374500_4377500
ENSMUSG00000019763.12_4	chr10	-	1980	13	NIC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	1	-11	combination_of_known_junctions	FALSE	canonical	3	35	junction_12	29.0128084741129	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGACATAATGATCCTTT	5756	False	NA	-16	True	NA	NA	NA	4382294	4353181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382063
ENSMUSG00000019767.13_2	chr10	+	3694	6	NIC	ENSMUSG00000019767.13	novel	3350	11	NA	NA	4	2645	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	5.03587132480567	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACTGCAATTTTAATAAAA	3211	False	NA	NA	False	AATAAA	-8	NA	4432505	4494346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_4432629_4464055_4464313_4468905_4469051_4470754_4470941_4483958_4484277_4491681
ENSMUSG00000019767.13_5	chr10	+	2184	1	Genic_Genomic	ENSMUSG00000019767.13	novel	NA	NA	NA	NA	27971	918	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATAAACCTATAAATTG	NA	False	NA	NA	False	AATATA	-3	NA	4510965	4513149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_+_4511000_4513100
ENSMUSG00000019767.13_7	chr10	+	3819	7	ISM	ENSMUSG00000019767.13	ENSMUST00000138112.8	3350	11	15	17878	15	2652	5prime_fragment	FALSE	canonical	2	2	junction_5	4.14996653266291	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTTAATAAAAGATTTAT	3222	False	NA	NA	False	AATAAA	-15	NA	4432516	4494353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_4432629_4462751_4462881_4464055_4464313_4468905_4469051_4470754_4470941_4483958_4484277_4491681
ENSMUSG00000019773.8_4	chr10	-	1757	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	178	5	178	-5	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAATGATGTGTGCAGG	NA	False	NA	-14	True	AATAAA	-40	NA	5755422	5749164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
ENSMUSG00000019773.8_5	chr10	-	1509	4	ISM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	3149	8	2149	-8	3prime_fragment	FALSE	canonical	3	762	junction_1	16.7531091641721	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTGTAATGATGTGTGC	NA	False	NA	15	True	AATAAA	-37	NA	5752451	5749167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868
ENSMUSG00000019774.9_0	chr10	-	1406	7	FSM	ENSMUSG00000019774.9	ENSMUST00000019908.9	2588	7	-3	1185	-3	140	multi-exon	FALSE	canonical	3	26	junction_4	9.49853789918334	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTAGACACAAAGGAAGAC	NA	False	NA	-15	True	TATAAA	-6	NA	5773913	5763071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_5763407_5764040_5764178_5765551_5765670_5767448_5767613_5768800_5768985_5770024_5770105_5773525
ENSMUSG00000019774.9_3	chr10	-	1253	7	NNC	ENSMUSG00000019774.9	novel	2588	7	NA	NA	23	140	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_4	8.85061203156784	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTAGACACAAAGGAAGAC	NA	False	NA	-15	True	TATAAA	-6	NA	5773887	5763071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_5763407_5764040_5764178_5765551_5765670_5767448_5767613_5768927_5768985_5770024_5770105_5773525
ENSMUSG00000019775.18_0	chr10	-	2475	5	FSM	ENSMUSG00000019775.18	ENSMUST00000131996.8	8107	5	30	5602	10	904	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCACAAGTTTGGAGTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	5872356	5781264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_5783142_5791271_5791507_5792535_5792626_5812518_5812663_5872227
ENSMUSG00000019777.17_0	chr10	+	1999	14	FSM	ENSMUSG00000019777.17	ENSMUST00000019911.14	2005	14	4	2	4	-1	multi-exon	TRUE	canonical	3	1084	junction_4	88.4199902429095	1164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTTTTCTGTCTGTTTA	NA	False	NA	12	True	ATTAAA	-13	NA	36850543	36877883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_36850800_36861122_36861236_36862302_36862421_36864075_36864151_36865145_36865285_36867752_36867895_36869603_36869697_36869771_36869881_36872984_36873126_36873389_36873499_36873962_36874094_36874409_36874566_36876364_36876423_36877524
ENSMUSG00000019779.16_1	chr10	+	4592	9	FSM	ENSMUSG00000019779.16	ENSMUST00000019913.15	4696	9	48	56	-14	-56	multi-exon	FALSE	canonical	0	0	junction_1	1.87082869338697	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAAATGACTATCCG	NA	False	NA	NA	False	AATAAA	-23	NA	34359442	34487218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_34359585_34359740_34360366_34423288_34423411_34459893_34460058_34462161_34462331_34467807_34467967_34481690_34481873_34483801_34483968_34484355
ENSMUSG00000019779.16_2	chr10	+	2744	1	ISM	ENSMUSG00000019779.16	ENSMUST00000019913.15	4696	9	125080	56	124947	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAAATGACTATCCG	837	False	NA	NA	False	AATAAA	-23	NA	34484474	34487218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_34484500_34487200
ENSMUSG00000019782.11_0	chr10	-	1045	7	FSM	ENSMUSG00000019782.11	ENSMUST00000019917.6	1090	7	39	6	1	0	multi-exon	FALSE	canonical	3	1217	junction_2	78.0243907733701	562	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATAAAGTGTTTACTTC	NA	False	NA	-29	True	AATAAA	-17	NA	33895581	33872556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_33872845_33877132_33877196_33877653_33877787_33878419_33878564_33884988_33885120_33888067_33888134_33895361
ENSMUSG00000019785.15_1	chr10	-	2277	6	FSM	ENSMUSG00000019785.15	ENSMUST00000019920.13	2717	6	439	1	-134	-1	multi-exon	FALSE	canonical	0	0	junction_4	2.82842712474619	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGAGATGTCATGGAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	33500326	33388282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_33389343_33404318_33404540_33419377_33419489_33471739_33471915_33498539_33499055_33500131
ENSMUSG00000019789.10_0	chr10	-	2536	5	FSM	ENSMUSG00000019789.10	ENSMUST00000019924.9	2550	5	13	1	13	-1	multi-exon	FALSE	canonical	0	0	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCATGTGGAGGAGTTGC	NA	False	NA	NA	False	ATTAAA	-18	NA	30718784	30708355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_30710424_30713470_30713553_30716386_30716471_30716599_30716679_30718561
ENSMUSG00000019790.18_0	chr10	-	2111	1	ISM	ENSMUSG00000019790.18	ENSMUST00000038213.14	8825	28	140815	2211	9080	2200	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGAATTTTTCTGCAC	NA	False	NA	NA	False	AATAAA	-15	NA	9635612	9633501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_9633500_9635600
ENSMUSG00000019790.18_1	chr10	-	4833	26	FSM	ENSMUSG00000019790.18	ENSMUST00000141722.8	4702	26	-135	4	-135	-4	multi-exon	FALSE	canonical	2	2	junction_7	7.03408842708137	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGCAGTGTTTTATCA	5871	False	NA	-8	True	ATTAAA	-7	NA	9776958	9635705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_9636699_9638488_9638710_9642901_9643014_9644573_9644740_9645084_9645455_9646193_9646434_9653764_9653816_9665106_9665173_9673865_9674018_9675686_9675813_9684163_9684343_9684772_9684994_9687411_9687453_9687708_9687777_9688003_9688152_9691994_9692068_9693049_9693205_9701113_9701193_9711577_9711702_9713820_9713905_9717614_9717679_9718970_9719106_9740756_9740858_9742356_9742439_9774900_9774999_9776274
ENSMUSG00000019790.18_10	chr10	-	3444	19	ISM	ENSMUSG00000019790.18	ENSMUST00000038213.14	8825	28	83269	4415	2171	-4	3prime_fragment	FALSE	canonical	2	7	junction_7	7.52875147454291	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGCAGTGTTTTATCA	NA	False	NA	-8	True	ATTAAA	-7	NA	9693158	9635705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_9636699_9638488_9638710_9642901_9643014_9644573_9644740_9645084_9645455_9646193_9646434_9653764_9653816_9659931_9659980_9660084_9660145_9665106_9665173_9673865_9674018_9675686_9675813_9684163_9684343_9684772_9684994_9687411_9687453_9687708_9687777_9688003_9688152_9691994_9692068_9693049
ENSMUSG00000019790.18_13	chr10	-	2723	19	ISM	ENSMUSG00000019790.18	ENSMUST00000125200.8	3300	25	-517	28393	-121	-270	5prime_fragment	FALSE	canonical	3	13	junction_5	4.90810616967884	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGGTATATTTTTTTAT	5885	False	NA	NA	False	AATAAA	-12	NA	9776944	9665049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_9665173_9673865_9674018_9675686_9675813_9684163_9684343_9684772_9684994_9687411_9687453_9687708_9687777_9688003_9688152_9691994_9692068_9693049_9693205_9701113_9701193_9711577_9711702_9713820_9713905_9717614_9717679_9718970_9719106_9740756_9740858_9742356_9742439_9774900_9774999_9776274
ENSMUSG00000019790.18_5	chr10	-	3302	2	ISM	ENSMUSG00000019790.18	ENSMUST00000136259.8	3791	7	17484	-2828	6104	2205	3prime_fragment	FALSE	canonical	3	29	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTTTCTGCACTTTCT	NA	False	NA	NA	False	AATAAA	-20	NA	9638588	9633496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_9636699_9638488
ENSMUSG00000019790.18_6	chr10	-	4955	28	FSM	ENSMUSG00000019790.18	ENSMUST00000038213.14	8825	28	-537	4407	-141	4	multi-exon	FALSE	canonical	2	7	junction_7	6.89744590012349	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTTTATCATTTCAGTA	5865	False	NA	0	True	ATTAAA	-15	NA	9776964	9635697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_9636699_9638488_9638710_9642901_9643014_9644573_9644740_9645084_9645455_9646193_9646434_9653764_9653816_9659931_9659980_9660084_9660145_9665106_9665173_9673865_9674018_9675686_9675813_9684163_9684343_9684772_9684994_9687411_9687453_9687708_9687777_9688003_9688152_9691994_9692068_9693049_9693205_9701113_9701193_9711577_9711702_9713820_9713905_9717614_9717679_9718970_9719106_9740756_9740858_9742356_9742439_9774900_9774999_9776274
ENSMUSG00000019790.18_8	chr10	-	4856	27	NIC	ENSMUSG00000019790.18	novel	8825	28	NA	NA	-141	-9	combination_of_known_splicesites	FALSE	canonical	3	7	junction_7	6.49806525598242	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTAACCAAATGTACCCT	5865	False	NA	-51	True	TATAAA	-2	NA	9776964	9635748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_9636699_9638488_9638710_9642901_9643014_9644573_9644740_9645084_9645455_9646193_9646434_9653764_9653816_9660084_9660145_9665106_9665173_9673865_9674018_9675686_9675813_9684163_9684343_9684772_9684994_9687411_9687453_9687708_9687777_9688003_9688152_9691994_9692068_9693049_9693205_9701113_9701193_9711577_9711702_9713820_9713905_9717614_9717679_9718970_9719106_9740756_9740858_9742356_9742439_9774900_9774999_9776274
ENSMUSG00000019791.13_0	chr10	-	623	5	FSM	ENSMUSG00000019791.13	ENSMUST00000161074.8	875	5	39	213	39	-5	multi-exon	FALSE	canonical	3	129	junction_1	42.7492689995981	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAACTGTTGGTTTGTTCT	NA	False	NA	-3	True	AATAAA	-37	NA	30494436	30484349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30494198
ENSMUSG00000019791.13_2	chr10	-	1732	6	FSM	ENSMUSG00000019791.13	ENSMUST00000216617.2	687	6	-12	-1033	-12	943	multi-exon	TRUE	canonical	2	5	junction_5	98.2148664917893	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGAGCATGTGTTCTTAT	NA	False	NA	NA	False	NA	NA	NA	30505640	30483193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30505319_30505398_30505527
ENSMUSG00000019792.9_11	chr10	-	1634	12	NIC	ENSMUSG00000019792.9	novel	2359	13	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	51.2211216763663	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTATGTGATACTCAG	NA	False	NA	-7	True	AATAAA	-18	NA	30476672	30410715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
ENSMUSG00000019792.9_2	chr10	-	1798	13	FSM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	66	495	-6	-5	multi-exon	FALSE	canonical	3	159	junction_10	17.7080882335979	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTATGTGATACTCAG	NA	False	NA	-7	True	AATAAA	-18	NA	30476679	30410715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
ENSMUSG00000019792.9_8	chr10	-	1706	12	NIC	ENSMUSG00000019792.9	novel	2359	13	NA	NA	-3	-12	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	52.8487628572059	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTCTAAAAATTATGTGA	NA	False	NA	-14	True	AATAAA	-11	NA	30476676	30410722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30470110_30470185_30473735_30473802_30476585
ENSMUSG00000019794.14_1	chr10	+	1764	11	FSM	ENSMUSG00000019794.14	ENSMUST00000019929.13	1774	11	7	3	-1	-2	multi-exon	TRUE	canonical	3	353	junction_4	21.6323831327018	411	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTTGTTTCAATTTAG	NA	False	NA	6	True	AATAAA	-15	NA	7601770	7638910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006_7637134_7638553
ENSMUSG00000019795.18_0	chr10	-	2463	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	22	6	-17	-6	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTACCCACCAGTCTGG	NA	False	NA	-14	True	AATAAA	-6	NA	7539045	7505150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019795.18_1	chr10	-	1599	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	327	831	-17	-823	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCAAAAGAAGCATTGG	NA	False	NA	-11	True	AATAAA	-4	NA	7539045	7505967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019795.18_22	chr10	-	1149	7	FSM	ENSMUSG00000019795.18	ENSMUST00000163085.8	1132	7	-24	7	18	-7	multi-exon	FALSE	canonical	3	667	junction_3	37.7491721763537	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGCCATCATTCTTG	NA	False	NA	-6	True	AATAAA	-14	NA	7539049	7513500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019795.18_4	chr10	-	1731	1	NIC	ENSMUSG00000019795.18	novel	2607	9	NA	NA	18044	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACCAGTCTGGATCCTT	NA	False	NA	-8	True	AATAAA	-12	NA	7506875	7505144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_7505100_7506900
ENSMUSG00000019796.13_0	chr10	+	3326	7	FSM	ENSMUSG00000019796.13	ENSMUST00000019931.12	3386	7	49	11	49	-11	multi-exon	FALSE	canonical	3	223	junction_6	23.7065391822594	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAAAATTCTTTCTT	7314	False	NA	12	True	AATAAA	-19	NA	7465629	7501236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_7466378_7471867_7472029_7474470_7474613_7478592_7478719_7479937_7480148_7484307_7484404_7499393
ENSMUSG00000019796.13_2	chr10	+	3326	8	NNC	ENSMUSG00000019796.13	novel	3386	7	NA	NA	48	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	120.844308673497	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAAAATTCTTTCTT	7313	False	NA	12	True	AATAAA	-19	NA	7465628	7501236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_7466378_7471867_7472029_7474470_7474613_7478592_7478719_7479937_7480148_7484307_7484380_7484487_7484511_7499393
ENSMUSG00000019797.12_1	chr10	-	782	4	FSM	ENSMUSG00000019797.12	ENSMUST00000147196.3	860	4	-2	80	-2	-54	multi-exon	TRUE	canonical	3	617	junction_3	154.165135127528	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGCCTCCTAATTGTCA	NA	False	NA	-1	True	AATAAA	-16	NA	43416966	43401208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_43401405_43406593_43406667_43408671_43409154_43416935
ENSMUSG00000019797.12_2	chr10	-	754	3	ISM	ENSMUSG00000019797.12	ENSMUST00000147196.3	860	4	7806	82	-7319	-56	3prime_fragment	FALSE	canonical	3	928	junction_2	15	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACTGCCTCCTAATTGT	NA	False	NA	-3	True	AATAAA	-14	NA	43409158	43401210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_43401405_43406593_43406667_43408671
ENSMUSG00000019802.14_0	chr10	+	2697	21	FSM	ENSMUSG00000019802.14	ENSMUST00000019937.5	6032	21	103	3232	-16	-1	multi-exon	FALSE	canonical	3	208	junction_15	23.0789947788026	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGTGTGGGCTGTGCAT	NA	False	NA	22	True	AATAAA	-22	NA	42637594	42705278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_42637885_42659437_42659538_42665295_42665411_42667174_42667288_42670770_42670833_42672201_42672261_42673678_42673730_42674742_42674852_42677628_42677724_42677817_42677951_42679885_42679979_42681071_42681227_42682519_42682668_42686838_42686922_42688431_42688492_42688660_42688835_42691050_42691210_42692363_42692466_42699876_42699976_42703872_42703978_42704886
ENSMUSG00000019802.14_5	chr10	+	2710	21	NIC	ENSMUSG00000019802.14	novel	6032	21	NA	NA	-32	-1	combination_of_known_junctions	TRUE	canonical	3	30	junction_15	52.0279732451688	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGTGTGGGCTGTGCAT	NA	False	NA	22	True	AATAAA	-22	NA	42637578	42705278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_42637885_42659437_42659538_42665295_42665411_42667174_42667288_42670770_42670833_42672201_42672261_42673678_42673730_42674742_42674852_42677628_42677724_42677817_42677951_42679885_42679979_42681071_42681227_42682519_42682668_42686838_42686922_42688431_42688492_42688663_42688835_42691050_42691210_42692363_42692466_42699876_42699976_42703872_42703978_42704886
ENSMUSG00000019804.13_0	chr10	+	1190	4	FSM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	208	3	-51	-3	multi-exon	FALSE	canonical	3	2006	junction_3	141.176800108548	1299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTCCTGTGTGCTCTGGT	NA	False	NA	9	True	AATAAA	-10	NA	42378234	42411363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648
ENSMUSG00000019806.14_0	chr10	-	1542	6	FSM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	7	5	3	-5	multi-exon	FALSE	canonical	3	87	junction_1	15.3179633110933	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAACCTGCTGTCTGCACT	NA	False	NA	-5	True	AATAAA	-12	NA	13744717	13522802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_13523451_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
ENSMUSG00000019806.14_12	chr10	-	1994	3	ISM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	37	147964	37	-2268	5prime_fragment	FALSE	canonical	3	116	junction_2	6.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTTCCAGTTCCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	13744664	13676158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_13677694_13704986_13705143_13744361
ENSMUSG00000019806.14_3	chr10	-	1308	5	FSM	ENSMUSG00000019806.14	ENSMUST00000105534.10	617	5	-83	-608	52	-7	multi-exon	FALSE	canonical	2	6	junction_1	50.8742321809381	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAACCTGCTGTCTGCA	NA	False	NA	-7	True	AATAAA	-10	NA	13744649	13522804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_13523451_13566267_13566384_13677591_13677694_13704986_13705143_13744361
ENSMUSG00000019806.14_7	chr10	-	1153	6	FSM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	27	259	27	-259	multi-exon	FALSE	canonical	3	37	junction_1	33.5654584357193	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCAGACTGGTTTTGTGT	NA	False	NA	NA	False	AATAAA	-22	NA	13744674	13528453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_13528756_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
ENSMUSG00000019808.9_0	chr10	+	758	6	FSM	ENSMUSG00000019808.9	ENSMUST00000019944.9	1466	6	359	349	359	-349	multi-exon	FALSE	non_canonical	0	0	junction_3	288.190631353623	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAAACAACCGTGAGCT	NA	False	NA	25	True	TTTAAA	-11	NA	13428996	13438771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_13429106_13432595_13432701_13435857_13436009_13437447_13437555_13438380_13438454_13438558
ENSMUSG00000019808.9_3	chr10	+	2221	5	NIC	ENSMUSG00000019808.9	novel	1466	6	NA	NA	340	-344	intron_retention	FALSE	canonical	3	637	junction_3	67.9977021670586	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAACCGTGAGCTCTTCC	NA	False	NA	30	True	TTTAAA	-16	NA	13428977	13438776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_13429106_13432595_13432701_13435857_13437555_13438380_13438454_13438558
ENSMUSG00000019809.17_0	chr10	-	2011	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	92	26	73	0	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATAGCTTTGTTT	NA	False	NA	NA	False	AATAAA	-8	NA	13428791	13399885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
ENSMUSG00000019809.17_3	chr10	-	1959	12	FSM	ENSMUSG00000019809.17	ENSMUST00000105539.2	1961	12	2	0	2	0	multi-exon	FALSE	canonical	2	10	junction_11	40.2069029063706	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATAGCTTTGTTT	NA	False	NA	NA	False	AATAAA	-8	NA	13428862	13399885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428692
ENSMUSG00000019809.17_8	chr10	-	4132	11	ISM	ENSMUSG00000019809.17	ENSMUST00000170376.8	1381	12	116	930	94	-630	5prime_fragment	FALSE	canonical	3	96	junction_5	16.5435788147547	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCATTTCATAATGAAGT	NA	False	NA	-2	True	AATAAA	-19	NA	13428770	13400515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
ENSMUSG00000019810.16_0	chr10	+	2165	7	FSM	ENSMUSG00000019810.16	ENSMUST00000121465.3	5741	7	87	3489	4	3	multi-exon	FALSE	canonical	3	139	junction_3	15.7418409201578	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCCCTCATATTCATTT	NA	False	NA	41	True	AATGAA	-27	NA	13376831	13391290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450
ENSMUSG00000019810.16_1	chr10	+	1916	8	FSM	ENSMUSG00000019810.16	ENSMUST00000060212.13	2007	8	157	-66	74	66	multi-exon	FALSE	canonical	3	69	junction_7	35.0731015021425	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGCCTAGACCACTGCAAT	NA	False	NA	-5	True	AATACA	-5	NA	13376901	13391353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450_13390619_13390860
ENSMUSG00000019813.17_1	chr10	-	2184	10	NIC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-44	1	combination_of_known_splicesites	FALSE	canonical	3	19	junction_9	73.7545144046229	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCTGTGGAAATATTC	82	False	NA	0	True	AATAAA	-21	NA	41685911	41594840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685783
ENSMUSG00000019813.17_11	chr10	-	2257	11	NIC	ENSMUSG00000019813.17	novel	2177	11	NA	NA	-30	1	combination_of_known_splicesites	FALSE	canonical	3	19	junction_10	60.7736785129878	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCTGTGGAAATATTC	96	False	NA	0	True	AATAAA	-21	NA	41685897	41594840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685783
ENSMUSG00000019813.17_13	chr10	-	2267	12	FSM	ENSMUSG00000019813.17	ENSMUST00000186239.7	2255	12	-16	4	1	1	multi-exon	FALSE	canonical	3	7	junction_11	75.4430440303278	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCTGTGGAAATATTC	368	False	NA	0	True	AATAAA	-21	NA	41685625	41594840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41657479_41657547_41685568
ENSMUSG00000019813.17_17	chr10	-	2393	11	NNC	ENSMUSG00000019813.17	novel	2177	11	NA	NA	-5623	1	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_10	58.0965575572254	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCTGTGGAAATATTC	5889	False	NA	0	True	AATAAA	-21	NA	41628257	41594840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41628007
ENSMUSG00000019813.17_18	chr10	-	2336	12	NIC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-18	1	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	60.5360353033458	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCTGTGGAAATATTC	108	False	NA	0	True	AATAAA	-21	NA	41685885	41594840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568_41685660_41685783
ENSMUSG00000019813.17_3	chr10	-	2113	10	ISM	ENSMUSG00000019813.17	ENSMUST00000189770.7	2232	11	239	4	1	1	3prime_fragment	FALSE	canonical	3	43	junction_4	55.5797724996344	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCTGTGGAAATATTC	368	False	NA	0	True	AATAAA	-21	NA	41685625	41594840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568
ENSMUSG00000019813.17_45	chr10	-	177	1	ISM	ENSMUSG00000019813.17	ENSMUST00000189222.2	711	3	66718	16	3037	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	41618890	41618713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_41618700_41618900
ENSMUSG00000019813.17_7	chr10	-	2152	11	NIC	ENSMUSG00000019813.17	novel	2177	11	NA	NA	1	1	combination_of_known_splicesites	FALSE	canonical	3	22	junction_8	61.0777373516734	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCTGTGGAAATATTC	368	False	NA	0	True	AATAAA	-21	NA	41685625	41594840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616910_41619037_41619218_41621766_41621918_41685568
ENSMUSG00000019813.17_9	chr10	-	2200	11	FSM	ENSMUSG00000019813.17	ENSMUST00000019951.16	2177	11	-22	-1	1	1	multi-exon	FALSE	canonical	3	114	junction_4	38.3583107031579	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCTGTGGAAATATTC	368	False	NA	0	True	AATAAA	-21	NA	41685625	41594840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568
ENSMUSG00000019814.6_0	chr10	-	1788	11	FSM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	42	467	42	-467	multi-exon	FALSE	canonical	3	645	junction_7	42.5845042239545	659	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACATGAACGGAATTGGT	NA	False	NA	-29	True	GATAAA	-19	NA	13068870	13054350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
ENSMUSG00000019817.19_0	chr10	+	5227	6	FSM	ENSMUSG00000019817.19	ENSMUST00000121646.8	5260	6	31	2	-13	-2	multi-exon	FALSE	canonical	3	25	junction_3	38.4416440855487	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCTGTCTTTTCATT	3041	False	NA	16	True	AATAAA	-16	NA	12966562	13007436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_12966769_12981598_12981638_12988262_12988295_12992439_12992526_13000599_13000913_13002885
ENSMUSG00000019817.19_10	chr10	+	5208	6	NIC	ENSMUSG00000019817.19	novel	5260	6	NA	NA	0	-4	intron_retention	FALSE	canonical	3	25	junction_3	45.5455815639673	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATCTTTCTGTCTTTTCA	3054	False	NA	14	True	AATAAA	-14	NA	12966575	13007434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_12966765_12981598_12981638_12988262_12988295_12992439_12992526_13000599_13000913_13002885
ENSMUSG00000019817.19_11	chr10	+	5277	7	NIC	ENSMUSG00000019817.19	novel	3946	9	NA	NA	0	-2	intron_retention	FALSE	canonical	3	22	junction_4	43.4335379887734	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCTGTCTTTTCATT	3054	False	NA	16	True	AATAAA	-16	NA	12966575	13007436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_12966769_12981598_12981638_12988262_12988295_12989901_12989965_12992439_12992526_13000599_13000913_13002885
ENSMUSG00000019817.19_2	chr10	+	5207	6	NIC	ENSMUSG00000019817.19	novel	3946	9	NA	NA	-11	-2	intron_retention	FALSE	canonical	3	37	junction_1	40.8480109674878	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCTGTCTTTTCATT	3043	False	NA	16	True	AATAAA	-16	NA	12966564	13007436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_12966765_12981598_12981638_12988262_12988295_12992453_12992526_13000599_13000913_13002885
ENSMUSG00000019817.19_35	chr10	+	5257	7	NIC	ENSMUSG00000019817.19	novel	3946	9	NA	NA	3	-2	intron_retention	FALSE	canonical	3	21	junction_4	43.6870181582075	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCTGTCTTTTCATT	3060	False	NA	16	True	AATAAA	-16	NA	12966581	13007436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_12966769_12981598_12981638_12988262_12988295_12989901_12989965_12992453_12992526_13000599_13000913_13002885
ENSMUSG00000019817.19_59	chr10	+	2894	1	ISM	ENSMUSG00000019817.19	ENSMUST00000121646.8	5260	6	38011	2	12435	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCTGTCTTTTCATT	NA	False	NA	16	True	AATAAA	-16	NA	13004542	13007436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_13004500_13007400
ENSMUSG00000019817.19_7	chr10	+	5200	6	NIC	ENSMUSG00000019817.19	novel	3946	9	NA	NA	0	-2	intron_retention	FALSE	canonical	3	44	junction_3	31.1704988731332	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCTGTCTTTTCATT	3054	False	NA	16	True	AATAAA	-16	NA	12966575	13007436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_12966769_12981598_12981638_12988262_12988295_12992453_12992526_13000599_13000913_13002885
ENSMUSG00000019818.16_1	chr10	+	2882	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	33	7	33	-7	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	2909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAAAGTGTCATATTTTG	NA	False	NA	13	True	AATAAA	-18	NA	41395442	41407037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
ENSMUSG00000019818.16_38	chr10	+	1761	1	ISM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	9867	7	9237	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAAAGTGTCATATTTTG	NA	False	NA	13	True	AATAAA	-18	NA	41405276	41407037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_41405300_41407000
ENSMUSG00000019820.12_0	chr10	-	1674	1	ISM	ENSMUSG00000019820.12	ENSMUST00000076817.5	12382	74	477866	8	19206	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATGACTTTGATGTTT	NA	False	NA	-9	True	AATAAA	-13	NA	12259613	12257939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_12257900_12259600
ENSMUSG00000019820.12_12	chr10	-	3294	13	ISM	ENSMUSG00000019820.12	ENSMUST00000219003.2	5751	25	106863	6	-38941	-6	3prime_fragment	TRUE	canonical	3	78	junction_10	16.958077393646	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATGACTTTGATGTTT	NA	False	NA	-9	True	AATAAA	-13	NA	12317760	12257939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679
ENSMUSG00000019820.12_15	chr10	-	4231	21	ISM	ENSMUSG00000019820.12	ENSMUST00000219003.2	5751	25	62343	9	62343	-9	3prime_fragment	FALSE	canonical	3	78	junction_10	14.7928192039246	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAAAATGACTTTGATG	NA	False	NA	-12	True	AATAAA	-10	NA	12362280	12257942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129
ENSMUSG00000019820.12_3	chr10	-	5757	25	FSM	ENSMUSG00000019820.12	ENSMUST00000219003.2	5751	25	-15	9	-15	-9	multi-exon	FALSE	canonical	3	61	junction_24	17.9698339045066	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAAAATGACTTTGATG	NA	False	NA	-12	True	AATAAA	-10	NA	12424638	12257942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12423690
ENSMUSG00000019820.12_4	chr10	-	4927	25	FSM	ENSMUSG00000019820.12	ENSMUST00000217994.2	3161	25	226	-1992	226	-6	multi-exon	FALSE	canonical	3	18	junction_24	24.236536927173	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATGACTTTGATGTTT	NA	False	NA	-9	True	AATAAA	-13	NA	12490349	12257939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12490234
ENSMUSG00000019820.12_5	chr10	-	2972	11	ISM	ENSMUSG00000019820.12	ENSMUST00000219003.2	5751	25	112558	9	-33246	-9	3prime_fragment	FALSE	canonical	3	78	junction_10	17.585505395069	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAAAATGACTTTGATG	NA	False	NA	-12	True	AATAAA	-10	NA	12312065	12257942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024
ENSMUSG00000019822.13_0	chr10	-	1608	10	FSM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	-12	6	-12	0	multi-exon	FALSE	canonical	3	150	junction_9	17.8020667408847	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTAGTGGCTCTACCTTG	NA	False	NA	-6	True	AATAAA	-14	NA	41366348	41363173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270_41365348_41365459_41365557_41365978
ENSMUSG00000019823.18_1	chr10	+	3320	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	8	-5	combination_of_known_splicesites	FALSE	canonical	3	71	junction_2	35.4241128130973	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACAGGGTTTATGCTCT	9123	False	NA	24	True	AATAAA	-13	NA	41352339	41363021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_41352537_41354005_41354311_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ENSMUSG00000019823.18_3	chr10	+	3389	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	8	-5	combination_of_known_splicesites	FALSE	canonical	3	23	junction_3	52.4446973581861	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACAGGGTTTATGCTCT	9123	False	NA	24	True	AATAAA	-13	NA	41352339	41363021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_41352537_41354005_41354311_41354958_41355064_41355321_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ENSMUSG00000019823.18_4	chr10	+	3528	24	FSM	ENSMUSG00000019823.18	ENSMUST00000019967.16	3563	24	30	5	8	-5	multi-exon	FALSE	canonical	3	135	junction_2	27.5095446574272	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACAGGGTTTATGCTCT	9123	False	NA	24	True	AATAAA	-13	NA	41352339	41363021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ENSMUSG00000019826.12_0	chr10	+	2828	7	FSM	ENSMUSG00000019826.12	ENSMUST00000080771.10	2844	7	13	3	13	-3	multi-exon	FALSE	canonical	3	58	junction_6	14.3807355707403	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACACTGATACTTGATCTT	NA	False	NA	1	True	AATAAA	-13	NA	41326391	41341567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41340272
ENSMUSG00000019826.12_1	chr10	+	2907	8	NNC	ENSMUSG00000019826.12	novel	2844	7	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_7	38.0542040907387	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGATACTTGATCTTTA	NA	False	NA	3	True	AATAAA	-15	NA	41326395	41341569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41339957_41340039_41340272
ENSMUSG00000019826.12_12	chr10	+	3541	6	NIC	ENSMUSG00000019826.12	novel	2844	7	NA	NA	18	-60	intron_retention	FALSE	canonical	3	58	junction_5	15.7530949340122	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTCCAAAGTATGAAACTG	NA	False	NA	-56	True	ATTAAA	-15	NA	41326396	41341510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41332612_41338274_41338357_41340272
ENSMUSG00000019826.12_9	chr10	+	2497	2	FSM	ENSMUSG00000019826.12	ENSMUST00000216656.2	2476	2	-32	11	20	-11	multi-exon	FALSE	canonical	3	104	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAGGGAAACATCTTTA	NA	False	NA	NA	False	AATAAA	-5	NA	41326398	41329453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_41326527_41327084
ENSMUSG00000019831.15_0	chr10	+	2547	9	FSM	ENSMUSG00000019831.15	ENSMUST00000019975.14	2609	9	55	7	55	-7	multi-exon	FALSE	canonical	3	17	junction_1	81.4024531264261	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGCTCTTGGGTGTCGCT	NA	False	NA	10	True	AATAAA	-12	NA	40759525	40814558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_40759606_40796243_40796405_40802479_40802615_40806626_40806781_40807911_40808030_40809108_40809282_40810472_40810653_40812105_40812735_40813641
ENSMUSG00000019831.15_2	chr10	+	2709	9	FSM	ENSMUSG00000019831.15	ENSMUST00000105509.2	2719	9	2	8	2	-7	multi-exon	FALSE	canonical	3	202	junction_5	32.5209067370515	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGCTCTTGGGTGTCGCT	NA	False	NA	10	True	AATAAA	-12	NA	40759824	40814558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_40760067_40796243_40796405_40802479_40802615_40806626_40806781_40807911_40808030_40809108_40809282_40810472_40810653_40812105_40812735_40813641
ENSMUSG00000019831.15_7	chr10	+	2710	9	NNC	ENSMUSG00000019831.15	novel	2719	9	NA	NA	2	-3	at_least_one_novel_splicesite	TRUE	canonical	3	34	junction_5	78.456098392668	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGGGTGTCGCTCTTC	NA	False	NA	14	True	AATAAA	-16	NA	40759824	40814562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_40760067_40796243_40796405_40802479_40802615_40806626_40806781_40807911_40808030_40809111_40809282_40810472_40810653_40812105_40812735_40813641
ENSMUSG00000019832.6_0	chr10	-	2079	3	FSM	ENSMUSG00000019832.6	ENSMUST00000019974.5	2149	3	27	43	27	-43	multi-exon	FALSE	canonical	1	1	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATTAAAAAAAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	10433982	10420788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_10422196_10426422_10426701_10433588
ENSMUSG00000019834.16_0	chr10	+	1728	4	ISM	ENSMUSG00000019834.16	ENSMUST00000078314.14	2269	8	26	18308	26	-18304	5prime_fragment	FALSE	canonical	1	1	junction_2	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTCCTTAATGTGTAGA	1512	False	NA	NA	False	AATAAA	-11	NA	40446357	40461820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_40446518_40449618_40450099_40457293_40457412_40460850
ENSMUSG00000019837.9_0	chr10	-	708	6	FSM	ENSMUSG00000019837.9	ENSMUST00000019982.9	887	6	1	178	1	-4	multi-exon	FALSE	canonical	3	216	junction_5	179.465205541353	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAGTGGTCTTGTATGC	8582	False	NA	-20	True	AAAACA	-17	NA	40133671	40125523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133571
ENSMUSG00000019837.9_1	chr10	-	728	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	-11	1809	-6	12	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAATTACTGCTTAGCTG	8575	False	NA	-4	True	AAAACA	-33	NA	40133678	40125507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
ENSMUSG00000019837.9_2	chr10	-	2419	5	ISM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	388	4	279	-4	3prime_fragment	FALSE	canonical	3	637	junction_1	21.8288799529431	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGATAATAGTTGATGGT	8974	False	NA	-35	True	AATAAA	-11	NA	40133279	40123702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208
ENSMUSG00000019838.12_0	chr10	-	5391	6	FSM	ENSMUSG00000019838.12	ENSMUST00000092566.8	5397	6	2	4	2	-4	multi-exon	FALSE	canonical	3	11	junction_2	3.87814388593306	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGATCTTGTGATTGTGT	7145	False	NA	NA	False	AATAAA	-18	NA	40018248	39909531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_39913401_39916594_39916824_39932482_39932627_39952559_39953014_39956658_39956804_40017698
ENSMUSG00000019838.12_1	chr10	-	2398	1	ISM	ENSMUSG00000019838.12	ENSMUST00000092566.8	5397	6	106323	2	40674	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTTGTGATTGTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	39911927	39909529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_39909500_39911900
ENSMUSG00000019838.12_2	chr10	-	1858	4	NIC	ENSMUSG00000019838.12	novel	5397	6	NA	NA	3	830	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	8.5764535535124	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATATCCTGGCAATTT	7146	False	NA	NA	False	AATAAA	-17	NA	40018247	39912464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_39913401_39916594_39916824_39932482_39932627_40017698
ENSMUSG00000019838.12_4	chr10	-	1943	3	FSM	ENSMUSG00000019838.12	ENSMUST00000213488.2	2325	3	3	379	2	-379	multi-exon	FALSE	canonical	3	21	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTACTCAAAGGTGTT	7145	False	NA	NA	False	AATAAA	-26	NA	40018248	39951765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_39953014_39956658_39956804_40017698
ENSMUSG00000019838.12_5	chr10	-	4393	4	ISM	ENSMUSG00000019838.12	ENSMUST00000092566.8	5397	6	65539	5	-110	-5	3prime_fragment	FALSE	canonical	3	11	junction_2	4.18993502999218	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAGATCTTGTGATTGTG	7552	False	NA	NA	False	AATAAA	-17	NA	39952711	39909532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_39913401_39916594_39916824_39932482_39932627_39952559
ENSMUSG00000019841.16_1	chr10	+	10832	33	FSM	ENSMUSG00000019841.16	ENSMUST00000131186.8	10789	33	-8	-35	1	-3	multi-exon	FALSE	canonical	3	21	junction_2	18.85944619912	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGTGCTATGACTTT	NA	False	NA	10	True	AATAAA	-6	NA	39608114	39751199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_39608610_39618686_39618815_39659138_39659329_39666764_39666840_39670859_39671021_39675876_39675974_39680947_39681043_39681595_39681701_39682657_39682743_39682830_39682980_39689966_39690087_39693137_39693376_39696443_39696587_39697101_39701255_39703705_39704602_39706894_39706978_39708513_39708640_39711155_39711349_39712621_39712734_39714437_39714554_39716880_39717000_39719406_39719526_39722137_39722280_39722664_39722910_39723970_39724080_39727862_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
ENSMUSG00000019841.16_12	chr10	+	7365	20	ISM	ENSMUSG00000019841.16	ENSMUST00000164763.8	10399	33	90125	6	-2642	-6	3prime_fragment	FALSE	canonical	3	42	junction_1	14.1117424238904	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATACAGTGCTATGAC	NA	False	NA	7	True	AATAAA	-3	NA	39698484	39751196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_39701255_39703705_39704602_39706894_39706978_39708513_39708640_39711155_39711349_39712621_39712734_39714437_39714554_39716880_39717000_39719406_39719526_39722137_39722280_39722664_39722910_39723970_39724080_39727862_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
ENSMUSG00000019841.16_15	chr10	+	4431	19	ISM	ENSMUSG00000019841.16	ENSMUST00000164763.8	10399	33	95502	14	-408	-14	3prime_fragment	FALSE	canonical	3	48	junction_8	13.1444961020869	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAATATGAAATACAGT	NA	False	NA	-1	True	ATTAAA	-6	NA	39703861	39751188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_39704602_39706894_39706978_39708513_39708640_39711155_39711349_39712621_39712734_39714437_39714554_39716880_39717000_39719406_39719526_39722137_39722280_39722664_39722910_39723970_39724080_39727862_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
ENSMUSG00000019841.16_22	chr10	+	2831	11	ISM	ENSMUSG00000019841.16	ENSMUST00000164763.8	10399	33	113781	3	-12780	-3	3prime_fragment	FALSE	canonical	3	51	junction_10	14.5821809068465	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGTGCTATGACTTT	NA	False	NA	10	True	AATAAA	-6	NA	39722140	39751199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_39722280_39722664_39722910_39723970_39724080_39727862_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
ENSMUSG00000019841.16_23	chr10	+	2588	10	ISM	ENSMUSG00000019841.16	ENSMUST00000164763.8	10399	33	114406	6	-12155	-6	3prime_fragment	FALSE	canonical	3	51	junction_9	12.7579556394732	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATACAGTGCTATGAC	NA	False	NA	7	True	AATAAA	-3	NA	39722765	39751196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_39722910_39723970_39724080_39727862_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
ENSMUSG00000019841.16_26	chr10	+	1971	6	ISM	ENSMUSG00000019841.16	ENSMUST00000139803.2	4858	21	34026	5	232	-3	3prime_fragment	FALSE	canonical	3	51	junction_5	14.1081536708387	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGTGCTATGACTTT	2736	False	NA	10	True	AATAAA	-6	NA	39735152	39751199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
ENSMUSG00000019841.16_38	chr10	+	4673	8	ISM	ENSMUSG00000019841.16	ENSMUST00000164763.8	10399	33	117154	17	-9407	-17	3prime_fragment	FALSE	canonical	3	51	junction_7	12.0288768200119	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAATAAAATATGAAATAC	NA	False	NA	-4	True	ATTAAA	-3	NA	39725513	39751185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
ENSMUSG00000019841.16_9	chr10	+	10548	32	FSM	ENSMUSG00000019841.16	ENSMUST00000019986.13	10713	32	157	8	-89	-3	multi-exon	FALSE	canonical	3	30	junction_10	17.5666413596239	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGTGCTATGACTTT	NA	False	NA	10	True	AATAAA	-6	NA	39608270	39751199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_39608610_39659138_39659329_39666764_39666840_39670859_39671021_39675876_39675974_39680947_39681043_39681595_39681701_39682657_39682743_39682830_39682980_39689966_39690087_39693137_39693376_39696443_39696587_39697101_39701255_39703705_39704602_39706894_39706978_39708513_39708640_39711155_39711349_39712621_39712734_39714437_39714554_39716880_39717000_39719406_39719526_39722137_39722280_39722664_39722910_39723970_39724080_39727862_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
ENSMUSG00000019842.7_0	chr10	+	2078	9	FSM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	305	484	305	0	multi-exon	FALSE	canonical	3	53	junction_2	7.56534037568701	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTGTTTATCTCAGT	NA	False	NA	3	True	AATAAA	-16	NA	39489234	39530819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_39489343_39501845_39502656_39510530_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
ENSMUSG00000019842.7_1	chr10	+	3140	2	ISM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	297	26434	297	-16885	5prime_fragment	FALSE	canonical	3	65	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAACATGTCTAAAACCT	NA	False	NA	NA	False	AATAAA	-11	NA	39489226	39504869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_39489343_39501845
ENSMUSG00000019842.7_14	chr10	+	1050	7	ISM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	21711	484	-6489	0	3prime_fragment	FALSE	canonical	3	66	junction_3	3.76017139089283	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTGTTTATCTCAGT	NA	False	NA	3	True	AATAAA	-16	NA	39510640	39530819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
ENSMUSG00000019842.7_4	chr10	+	3980	8	NIC	ENSMUSG00000019842.7	novel	2867	9	NA	NA	309	-1	intron_retention	FALSE	canonical	3	53	junction_2	7.89212989539036	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAATGTGTTTATCTCAG	NA	False	NA	2	True	AATAAA	-15	NA	39489238	39530818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_39489343_39501845_39502656_39510530_39510721_39515215_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
ENSMUSG00000019842.7_8	chr10	+	1934	8	ISM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	12952	484	12952	0	3prime_fragment	FALSE	canonical	3	53	junction_1	7.86882248795452	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTGTTTATCTCAGT	NA	False	NA	3	True	AATAAA	-16	NA	39501881	39530819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_39502656_39510530_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
ENSMUSG00000019843.15_0	chr10	+	2591	14	FSM	ENSMUSG00000019843.15	ENSMUST00000099967.10	3528	14	-21	958	13	-8	multi-exon	FALSE	canonical	3	82	junction_9	15.9414609592343	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAAAATGATCAGGACA	NA	False	NA	NA	False	AATAAA	-18	NA	39245772	39440410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_39246187_39271000_39271041_39331061_39331132_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405432_39405598_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
ENSMUSG00000019843.15_1	chr10	+	2585	14	FSM	ENSMUSG00000019843.15	ENSMUST00000063091.13	3562	14	10	967	10	-8	multi-exon	FALSE	canonical	3	31	junction_8	31.8009712925239	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAAAATGATCAGGACA	NA	False	NA	NA	False	AATAAA	-18	NA	39245769	39440410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_39246187_39271000_39271041_39331061_39331132_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405914_39406071_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
ENSMUSG00000019843.15_2	chr10	+	2522	13	NIC	ENSMUSG00000019843.15	novel	3528	14	NA	NA	15	-5	combination_of_known_junctions	FALSE	canonical	1	4	junction_2	33.9276190342519	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATGATCAGGACAGGT	NA	False	NA	NA	False	AATAAA	-21	NA	39245774	39440413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_39246187_39271000_39271041_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405432_39405598_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
ENSMUSG00000019843.15_9	chr10	+	2433	13	NIC	ENSMUSG00000019843.15	novel	3562	14	NA	NA	9	-5	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	33.424874303761	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATGATCAGGACAGGT	NA	False	NA	NA	False	AATAAA	-21	NA	39245768	39440413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_39246187_39271000_39271041_39331061_39331132_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
ENSMUSG00000019845.9_0	chr10	+	2082	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	-18	865	-18	96	multi-exon	FALSE	canonical	3	143	junction_3	7.58423767804153	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGCAAATGTGTAAACGG	NA	False	NA	7	True	AATAAA	-7	NA	39010000	39026189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
ENSMUSG00000019845.9_5	chr10	+	2090	12	NIC	ENSMUSG00000019845.9	novel	2929	12	NA	NA	-16	96	combination_of_known_junctions	FALSE	canonical	3	9	junction_7	44.0810673177019	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGCAAATGTGTAAACGG	NA	False	NA	7	True	AATAAA	-7	NA	39010002	39026189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020569_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
ENSMUSG00000019846.12_0	chr10	+	2504	15	ISM	ENSMUSG00000019846.12	ENSMUST00000019992.6	6046	38	36	48673	-2	3848	5prime_fragment	FALSE	canonical	0	0	junction_6	2.71052370871575	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTAAGCTTGAGGAAT	NA	False	NA	NA	False	AATAAA	-12	NA	38841546	38937511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_38842146_38881407_38881510_38886993_38887119_38893316_38893398_38902530_38902746_38904617_38904693_38906428_38906581_38909006_38909118_38918576_38918689_38921648_38921817_38923929_38924124_38929736_38929854_38932772_38932922_38936122_38936265_38937349
ENSMUSG00000019846.12_1	chr10	+	5989	38	FSM	ENSMUSG00000019846.12	ENSMUST00000019992.6	6046	38	47	10	-8	-10	multi-exon	TRUE	canonical	0	0	junction_6	2.38481928848171	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCTTCCTATTTCTTATT	NA	False	NA	NA	False	AATAAA	-11	NA	38841557	38986174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_38842146_38881407_38881510_38886993_38887119_38893316_38893398_38902530_38902746_38904617_38904693_38906428_38906581_38909006_38909118_38918576_38918689_38921648_38921817_38923929_38924124_38929736_38929854_38932772_38932922_38936122_38936265_38937349_38937447_38941599_38941717_38943850_38944031_38945950_38946091_38948710_38948891_38949560_38949707_38950120_38950284_38950659_38950794_38951351_38951524_38954715_38954848_38956477_38956621_38958723_38958863_38959264_38959403_38963248_38963383_38964282_38964448_38964754_38964903_38968125_38968314_38970890_38971081_38973078_38973235_38974322_38974483_38979483_38979615_38981132_38981227_38981957_38982078_38985883
ENSMUSG00000019848.15_0	chr10	+	1273	5	NNC	ENSMUSG00000019848.15	novel	1853	4	NA	NA	-5	6	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	10.280442597476	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCTTACTGTTATAATGG	NA	False	NA	NA	False	AATAAA	-19	NA	45165492	45194219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_45165672_45190656_45191005_45191163_45191376_45192526_45192636_45193794
ENSMUSG00000019848.15_1	chr10	+	1742	4	FSM	ENSMUSG00000019848.15	ENSMUST00000019994.14	1853	4	91	20	-6	-20	multi-exon	FALSE	canonical	3	31	junction_1	0.942809041582063	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAACAATAACATGCCAA	NA	False	NA	NA	False	AATAAA	-4	NA	45165491	45194528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_45165672_45190656_45191376_45192526_45192636_45193794
ENSMUSG00000019849.12_1	chr10	+	2724	15	FSM	ENSMUSG00000019849.12	ENSMUST00000099858.4	10933	15	4	8205	4	-8205	multi-exon	FALSE	canonical	3	732	junction_5	67.3298687395854	1494	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGGCTTTAGTTTTGGT	NA	False	NA	29	True	AATAAA	-14	NA	44943302	45035089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_44943472_44948148_44948224_44967088_44967223_44968757_44968889_44971076_44971287_44973488_44973611_44983867_44983974_44991158_44991351_44996738_44996937_45002059_45002164_45024080_45024218_45026531_45026627_45029150_45029283_45031611_45031769_45034327
ENSMUSG00000019850.12_0	chr10	-	4378	9	FSM	ENSMUSG00000019850.12	ENSMUST00000019997.11	4422	9	40	4	6	-1	multi-exon	FALSE	canonical	1	1	junction_1	0.927024810886958	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATTCTGATGCTTTCTGT	NA	False	NA	NA	False	AATAAA	-12	NA	18891118	18876661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_18878764_18879323_18879506_18880204_18881080_18881298_18881480_18882610_18882782_18882929_18883078_18883892_18884084_18887228_18887539_18890900
ENSMUSG00000019851.9_0	chr10	+	1867	3	FSM	ENSMUSG00000019851.9	ENSMUST00000019998.9	1952	3	82	3	82	-3	multi-exon	FALSE	canonical	3	42	junction_2	1	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCCTGTGTCTGCTTTGT	NA	False	NA	9	True	AATAAA	-11	NA	18720849	18732818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_18721155_18729284_18729426_18731397
ENSMUSG00000019852.8_0	chr10	-	4404	1	ISM	ENSMUSG00000019852.8	ENSMUST00000215836.2	14579	34	157699	8	157503	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAAATGTGATGTGGAG	NA	False	NA	NA	False	AATAAA	-12	NA	18461998	18457594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_18457600_18462000
ENSMUSG00000019852.8_1	chr10	-	2482	2	ISM	ENSMUSG00000019852.8	ENSMUST00000215836.2	14579	34	152095	6177	151899	1387	3prime_fragment	FALSE	canonical	3	10	junction_1	0	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGTCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18467602	18463763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_18465521_18466877
ENSMUSG00000019852.8_2	chr10	-	3139	1	NIC	ENSMUSG00000019852.8	novel	14579	34	NA	NA	152604	1392	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18466897	18463758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_18463800_18466900
ENSMUSG00000019852.8_4	chr10	-	4250	12	ISM	ENSMUSG00000019852.8	ENSMUST00000215836.2	14579	34	130685	6174	130489	1390	3prime_fragment	FALSE	canonical	1	1	junction_5	2.45959077426703	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18489012	18463760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_18465521_18466877_18468091_18470655_18470778_18473075_18473208_18473443_18473547_18474933_18475049_18476181_18476359_18479154_18479284_18483392_18483538_18484068_18484173_18486951_18487075_18488885
ENSMUSG00000019853.7_1	chr10	-	1101	4	FSM	ENSMUSG00000019853.7	ENSMUST00000020000.7	2535	4	166	1268	-23	-8	multi-exon	FALSE	canonical	3	26	junction_2	0.471404520791032	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATAACTTTCCTTGCCT	NA	False	NA	NA	False	AGTAAA	-14	NA	18421658	18416513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_18417081_18420012_18420194_18420825_18420962_18421441
ENSMUSG00000019854.18_0	chr10	+	2972	20	FSM	ENSMUSG00000019854.18	ENSMUST00000126390.8	2595	20	-372	-5	-293	5	multi-exon	FALSE	canonical	3	129	junction_9	41.6677266716506	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGGAGAATACATTGTAT	NA	False	NA	7	True	AATAAA	-18	NA	17931315	18000885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17983415_17983497_17990146_17990235_17991463_17991566_17993412_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
ENSMUSG00000019854.18_2	chr10	+	2964	20	NNC	ENSMUSG00000019854.18	novel	2595	20	NA	NA	-287	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	65.9326442167095	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTCTCTGGAGAATACAT	NA	False	NA	2	True	AATAAA	-13	NA	17931321	18000880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17983415_17983497_17990146_17990235_17991463_17991566_17993409_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
ENSMUSG00000019854.18_4	chr10	+	2898	19	FSM	ENSMUSG00000019854.18	ENSMUST00000164556.8	2537	19	-382	21	-303	2	multi-exon	FALSE	canonical	3	82	junction_9	47.5026964796685	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTCTGGAGAATACATTG	NA	False	NA	4	True	AATAAA	-15	NA	17931305	18000882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17990146_17990235_17991463_17991566_17993412_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
ENSMUSG00000019854.18_5	chr10	+	2891	19	NNC	ENSMUSG00000019854.18	novel	2537	19	NA	NA	-289	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	70.897421987294	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGAGAATACATTGTATT	NA	False	NA	8	True	AATAAA	-19	NA	17931319	18000886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17990146_17990235_17991463_17991566_17993409_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
ENSMUSG00000019854.18_6	chr10	+	2975	20	NIC	ENSMUSG00000019854.18	novel	2595	20	NA	NA	-298	6	combination_of_known_junctions	FALSE	canonical	3	27	junction_9	57.6845946971456	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGAGAATACATTGTATT	NA	False	NA	8	True	AATAAA	-19	NA	17931310	18000886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17983418_17983497_17990146_17990235_17991463_17991566_17993412_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
ENSMUSG00000019856.15_0	chr10	-	4044	18	FSM	ENSMUSG00000019856.15	ENSMUST00000020003.15	4164	18	-106	226	-106	-1	multi-exon	FALSE	canonical	1	1	junction_7	2.21976026636626	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAATGTTTTTCGTGGTTG	4364	False	NA	NA	False	AATAAA	-11	NA	53627325	53509466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_53509812_53511327_53511531_53514272_53514378_53517040_53517159_53523078_53523226_53523667_53523853_53525197_53525326_53528395_53528550_53531062_53531276_53550661_53550813_53551231_53551354_53553826_53553989_53560331_53560455_53566046_53566245_53570790_53570973_53573219_53573356_53574584_53575440_53626808
ENSMUSG00000019856.15_1	chr10	-	4036	17	NIC	ENSMUSG00000019856.15	novel	4164	18	NA	NA	16	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	2.2220486043289	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTAAATTGTGTACTTCCA	4486	False	NA	NA	False	AATAAA	-8	NA	53627203	53509247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_53509812_53511327_53511531_53517040_53517159_53523078_53523226_53523667_53523853_53525197_53525326_53528395_53528550_53531062_53531276_53550661_53550813_53551231_53551354_53553826_53553989_53560331_53560455_53566046_53566245_53570790_53570973_53573219_53573356_53574584_53575440_53626808
ENSMUSG00000019857.8_0	chr10	+	989	4	FSM	ENSMUSG00000019857.8	ENSMUST00000020004.8	2201	4	45	1167	45	76	multi-exon	FALSE	canonical	3	699	junction_3	57.7119282875444	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTTTCTCTAATGTGTT	1566	False	NA	5	True	TATAAA	-18	NA	53473092	53484154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_53473395_53478443_53478560_53482204_53482382_53483760
ENSMUSG00000019861.16_0	chr10	-	4216	8	FSM	ENSMUSG00000019861.16	ENSMUST00000020008.10	4216	8	-47	47	2	-39	multi-exon	FALSE	canonical	3	117	junction_5	13.2125481483107	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAGATTTGAAGGAAAATA	NA	False	NA	-74	True	AATAAA	-31	NA	52258218	52213194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_52215950_52222144_52222326_52225167_52225333_52226696_52226793_52229422_52229589_52230667_52230844_52234868_52235034_52257706
ENSMUSG00000019861.16_4	chr10	-	2366	1	ISM	ENSMUSG00000019861.16	ENSMUST00000105475.9	4317	8	42665	70	9669	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTGAAGGAAAATAAATGT	NA	False	NA	-69	True	AATAAA	-36	NA	52215555	52213189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_52213200_52215600
ENSMUSG00000019863.8_1	chr10	-	1959	11	FSM	ENSMUSG00000019863.8	ENSMUST00000020012.7	1981	11	19	3	19	-3	multi-exon	FALSE	canonical	3	72	junction_2	11.040380428228	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTACTGGATTTTACTAT	NA	False	NA	NA	False	TATAAA	-3	NA	43777722	43750186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_43750703_43752467_43752674_43757468_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
ENSMUSG00000019863.8_11	chr10	-	1252	9	ISM	ENSMUSG00000019863.8	ENSMUST00000020012.7	1981	11	14	7275	14	-549	5prime_fragment	FALSE	canonical	3	75	junction_6	9.72111104761179	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTTAGAATCTTTGCTT	NA	False	NA	-9	True	ATTAAA	-14	NA	43777727	43757458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
ENSMUSG00000019863.8_12	chr10	-	919	5	ISM	ENSMUSG00000019863.8	ENSMUST00000154405.2	2290	8	25	7767	25	-3	5prime_fragment	FALSE	canonical	3	75	junction_2	10.2316909648406	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGCAGGCTTCATGAATC	NA	False	NA	NA	False	AATAAA	-10	NA	43777716	43764676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
ENSMUSG00000019863.8_3	chr10	-	3564	2	FSM	ENSMUSG00000019863.8	ENSMUST00000146937.2	918	2	-2414	-232	-2414	-2	multi-exon	FALSE	canonical	3	73	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTACTGGATTTTACTATA	NA	False	NA	NA	False	TATAAA	-4	NA	43755514	43750185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_43750703_43752467
ENSMUSG00000019863.8_6	chr10	-	1871	10	NIC	ENSMUSG00000019863.8	novel	1981	11	NA	NA	11	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	28.9217761522779	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTACTGGATTTTACTATA	NA	False	NA	NA	False	TATAAA	-4	NA	43777730	43750185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_43750703_43752467_43752674_43757468_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43771429_43771529_43772004_43772165_43777609
ENSMUSG00000019864.15_0	chr10	+	2970	9	FSM	ENSMUSG00000019864.15	ENSMUST00000054418.12	2981	9	11	0	11	0	multi-exon	FALSE	canonical	3	128	junction_8	16.985287751463	359	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGGTTTTTGGTCACTG	NA	False	NA	8	True	NA	NA	NA	43777813	43823858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_43778533_43783754_43783907_43785902_43785972_43786788_43786914_43797382_43797432_43804318_43804456_43808358_43808543_43811994_43812088_43822416
ENSMUSG00000019868.17_0	chr10	-	1317	8	FSM	ENSMUSG00000019868.17	ENSMUST00000154132.8	1974	8	75	582	15	18	multi-exon	FALSE	canonical	3	590	junction_6	66.3663302881692	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCGGGTTGGAGATCCTG	NA	False	NA	-14	True	AATAAA	-13	NA	14581229	14531080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_14531590_14536809_14536897_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
ENSMUSG00000019868.17_4	chr10	-	1236	7	FSM	ENSMUSG00000019868.17	ENSMUST00000149485.2	753	7	-28	-455	13	22	multi-exon	FALSE	canonical	3	56	junction_1	226.315168637799	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGTTGGAGATCCTGACTT	NA	False	NA	-10	True	AATAAA	-17	NA	14581231	14531076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_14531590_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
ENSMUSG00000019872.14_0	chr10	+	1708	8	FSM	ENSMUSG00000019872.14	ENSMUST00000020022.8	1961	8	240	13	46	-13	multi-exon	FALSE	canonical	1	1	junction_1	1.57790871674104	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATGCCATGGAGTTCTGT	NA	False	NA	NA	False	AATAAA	-17	NA	57670709	57687913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_57670881_57677006_57677221_57678515_57678661_57681662_57681760_57683450_57683621_57683972_57684154_57685141_57685267_57687308
ENSMUSG00000019873.9_0	chr10	-	936	8	FSM	ENSMUSG00000019873.9	ENSMUST00000020023.9	5430	8	-1	4495	-1	-2012	multi-exon	FALSE	canonical	3	113	junction_7	23.5068379109447	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCATTTTCTAACCTGA	NA	False	NA	-12	True	AATAAA	-14	NA	66932725	66849462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_66849566_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
ENSMUSG00000019873.9_15	chr10	-	1283	6	NIC	ENSMUSG00000019873.9	novel	838	3	NA	NA	9	-10	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	65.7346179725721	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTATAAAAGGGTTGACAT	NA	False	NA	NA	False	ATTAAA	-11	NA	66932715	66864714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_66865466_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
ENSMUSG00000019873.9_23	chr10	-	1012	9	FSM	ENSMUSG00000019873.9	ENSMUST00000217841.2	2925	9	-99	2012	0	-2012	multi-exon	FALSE	canonical	0	0	junction_2	70.8762125116742	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCATTTTCTAACCTGA	NA	False	NA	-12	True	AATAAA	-14	NA	66932724	66849462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_66849566_66849866_66849944_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
ENSMUSG00000019873.9_8	chr10	-	2088	1	ISM	ENSMUSG00000019873.9	ENSMUST00000020023.9	5430	8	85668	1	23355	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAGTATTTTTTTTTCT	NA	False	NA	0	True	AATAAA	-23	NA	66847056	66844968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_66845000_66847100
ENSMUSG00000019877.11_2	chr10	-	2813	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	59	8	6	-8	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAACGTGTGGTGGTA	NA	False	NA	NA	False	AATAAA	-8	NA	57408567	57391877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
ENSMUSG00000019878.9_0	chr10	+	2337	12	FSM	ENSMUSG00000019878.9	ENSMUST00000079833.6	2604	12	-1	268	-1	2	multi-exon	FALSE	canonical	3	174	junction_10	23.7006119808005	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATTGTTTGTTGAGTCG	NA	False	NA	16	True	AATAAA	-17	NA	57362490	57388963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_57362698_57371993_57372103_57372250_57372379_57373592_57373718_57375511_57375588_57377465_57377528_57378718_57378807_57380677_57380827_57381241_57381479_57382292_57382399_57387539_57387625_57387998
ENSMUSG00000019878.9_14	chr10	+	4208	2	FSM	ENSMUSG00000019878.9	ENSMUST00000220162.2	2304	2	-1902	-2	-1902	2	multi-exon	FALSE	canonical	3	192	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATTGTTTGTTGAGTCG	NA	False	NA	16	True	AATAAA	-17	NA	57384381	57388963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_57387625_57387998
ENSMUSG00000019878.9_3	chr10	+	2391	13	NIC	ENSMUSG00000019878.9	novel	2430	14	NA	NA	-1	2	combination_of_known_junctions	FALSE	canonical	3	28	junction_11	71.7650487509221	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATTGTTTGTTGAGTCG	NA	False	NA	16	True	AATAAA	-17	NA	57362490	57388963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_57362698_57371993_57372103_57372250_57372379_57373592_57373718_57375511_57375588_57377465_57377528_57378718_57378807_57380677_57380827_57381241_57381479_57382292_57382399_57385156_57385211_57387539_57387625_57387998
ENSMUSG00000019883.12_0	chr10	+	1826	6	FSM	ENSMUSG00000019883.12	ENSMUST00000160399.8	1845	6	19	0	19	0	multi-exon	FALSE	canonical	3	12	junction_1	32.6643536596088	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTTATGTCCATTCCAG	NA	False	NA	2	True	AATAGA	-13	NA	29189180	29221556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_29189294_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
ENSMUSG00000019883.12_2	chr10	+	2177	6	FSM	ENSMUSG00000019883.12	ENSMUST00000161605.8	581	6	0	-1596	0	380	multi-exon	FALSE	canonical	1	1	junction_1	36.9972971985792	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATTTAAATCTCACGAC	NA	False	NA	1	True	AATAAA	-17	NA	29189276	29221936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_29189361_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
ENSMUSG00000019883.12_3	chr10	+	2049	6	FSM	ENSMUSG00000019883.12	ENSMUST00000020034.6	3856	6	67	1740	67	169	multi-exon	FALSE	canonical	3	81	junction_5	6.04648658313239	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATACAGGACCCCACTTT	NA	False	NA	NA	False	AATACA	-18	NA	29189562	29221725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_29189730_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
ENSMUSG00000019883.12_4	chr10	+	1872	6	FSM	ENSMUSG00000019883.12	ENSMUST00000161426.2	634	6	-91	-1147	72	1147	multi-exon	FALSE	canonical	0	0	junction_5	38.0683595653924	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTTTTGTTTGACATTC	NA	False	NA	NA	False	AATAAA	-26	NA	29189567	29211678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_29189730_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29210461
ENSMUSG00000019889.11_0	chr10	+	4738	30	NIC	ENSMUSG00000019889.11	novel	4754	34	NA	NA	-7	73	combination_of_known_splicesites	FALSE	canonical	3	130	junction_6	25.8465700684714	288	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACTGTATGAGAGCATC	NA	False	NA	31	True	AATAAA	-19	NA	27950842	28472035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_27951174_28082129_28082253_28139496_28139769_28210471_28210554_28212417_28212534_28230600_28230776_28259426_28259721_28341753_28342057_28348943_28349054_28351080_28351283_28359183_28359290_28368909_28369184_28372904_28372942_28427613_28427753_28436000_28436162_28442490_28442676_28444322_28444411_28445892_28445970_28449363_28449401_28450814_28450913_28451585_28451703_28456388_28456544_28461555_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797
ENSMUSG00000019889.11_6	chr10	+	4729	30	NNC	ENSMUSG00000019889.11	novel	4754	34	NA	NA	-3	71	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_13	36.8965194972466	48	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGACTGTATGAGAGCA	NA	False	NA	29	True	AATAAA	-17	NA	27950846	28472033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_27951174_28082129_28082253_28139496_28139769_28210471_28210554_28212417_28212534_28230600_28230776_28259426_28259721_28341753_28342057_28348943_28349054_28351080_28351283_28359183_28359290_28368909_28369184_28372904_28372942_28427616_28427753_28436000_28436162_28442490_28442676_28444322_28444411_28445892_28445970_28449363_28449401_28450814_28450913_28451585_28451703_28456388_28456544_28461555_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797
ENSMUSG00000019889.11_9	chr10	+	4769	31	NIC	ENSMUSG00000019889.11	novel	6177	32	NA	NA	-2	73	combination_of_known_splicesites	FALSE	canonical	3	10	junction_16	47.0358728348197	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACTGTATGAGAGCATC	NA	False	NA	31	True	AATAAA	-19	NA	27950847	28472035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_27951174_28082129_28082253_28139496_28139769_28210471_28210554_28212417_28212534_28230600_28230776_28259426_28259721_28341753_28342057_28348943_28349054_28351080_28351283_28359183_28359290_28368909_28369184_28372904_28372942_28427613_28427753_28436000_28436162_28438102_28438139_28442490_28442676_28444322_28444411_28445892_28445970_28449363_28449401_28450814_28450913_28451585_28451703_28456388_28456544_28461555_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797
ENSMUSG00000019891.16_0	chr10	+	2995	11	FSM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	21	8	3	-8	multi-exon	FALSE	canonical	3	170	junction_2	11.5134703716994	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAGAGAGCCCCTGACT	NA	False	NA	-2	True	AATAAA	-8	NA	52109735	52197464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
ENSMUSG00000019891.16_10	chr10	+	2854	10	NIC	ENSMUSG00000019891.16	novel	3024	11	NA	NA	15	-3	combination_of_known_splicesites	FALSE	canonical	2	2	junction_5	58.3357671449949	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGCCCCTGACTTCTAT	NA	False	NA	3	True	AATAAA	-13	NA	52109747	52197469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
ENSMUSG00000019891.16_3	chr10	+	2797	10	FSM	ENSMUSG00000019891.16	ENSMUST00000218582.2	2795	10	-12	10	6	-8	multi-exon	TRUE	canonical	3	38	junction_1	48.9166587797331	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAGAGAGCCCCTGACT	NA	False	NA	-2	True	AATAAA	-8	NA	52109720	52197464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_52109932_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
ENSMUSG00000019894.15_1	chr10	+	3698	12	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	-6	-6	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	31.6193789307593	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACGGAGTTCGTGTCC	NA	False	NA	NA	False	AATAAA	-9	NA	103203637	103255230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
ENSMUSG00000019894.15_11	chr10	+	3282	12	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	387	-6	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	33.5120553120764	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACGGAGTTCGTGTCC	NA	False	NA	NA	False	AATAAA	-9	NA	103204090	103255230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_103204182_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
ENSMUSG00000019894.15_14	chr10	+	1198	5	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	390	-1789	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	44.144648599802	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTAGTATCATTTATAG	NA	False	NA	1	True	ATTAAA	-14	NA	103204093	103231230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_103204182_103224757_103225203_103229251_103229410_103229761_103229889_103230850
ENSMUSG00000019894.15_2	chr10	+	3570	12	FSM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	-33	6	-8	-6	multi-exon	FALSE	canonical	3	31	junction_1	32.2574867983458	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACGGAGTTCGTGTCC	NA	False	NA	NA	False	AATAAA	-9	NA	103203635	103255230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
ENSMUSG00000019894.15_20	chr10	+	2837	10	ISM	ENSMUSG00000019894.15	ENSMUST00000074204.12	3607	13	25587	8	-20	-6	3prime_fragment	FALSE	canonical	3	31	junction_7	32.022368725087	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACGGAGTTCGTGTCC	NA	False	NA	NA	False	AATAAA	-9	NA	103229290	103255230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
ENSMUSG00000019894.15_4	chr10	+	1491	5	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	-8	-1787	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	32.0341614530488	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAGTATCATTTATAGTA	NA	False	NA	3	True	ATTAAA	-16	NA	103203635	103231232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850
ENSMUSG00000019894.15_7	chr10	+	1855	5	ISM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	-33	23510	-8	-1293	5prime_fragment	FALSE	canonical	3	31	junction_1	35.7596140918774	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTTTTCATATCTCAG	NA	False	NA	NA	False	NA	NA	NA	103203635	103231726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850
ENSMUSG00000019897.9_0	chr10	+	980	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	419	414	-18	-414	multi-exon	FALSE	canonical	3	411	junction_3	54.9201440477192	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGGTCTGAGCTCACAG	NA	False	NA	3	True	AATATA	-9	NA	105677346	105683280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
ENSMUSG00000019897.9_1	chr10	+	3496	3	FSM	ENSMUSG00000019897.9	ENSMUST00000133538.2	4314	3	404	414	-33	-414	multi-exon	FALSE	canonical	3	411	junction_2	58.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGGTCTGAGCTCACAG	NA	False	NA	3	True	AATATA	-9	NA	105677331	105683280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_105677517_105678402_105681311_105682877
ENSMUSG00000019897.9_5	chr10	+	2249	2	ISM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	2537	414	2100	-414	3prime_fragment	FALSE	canonical	3	411	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGGTCTGAGCTCACAG	NA	False	NA	3	True	AATATA	-9	NA	105679464	105683280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_105681311_105682877
ENSMUSG00000019907.11_0	chr10	+	5448	25	FSM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	-52	-2041	-52	-592	multi-exon	FALSE	canonical	3	168	junction_12	28.3996466625125	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTGAACTTTTAATG	NA	False	NA	8	True	AATAAA	-44	NA	107998001	108115253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108088617_108088786_108089185_108089357_108095616_108095708_108096696_108096898_108097105_108097278_108098170_108098293_108100563_108100630_108103264_108103282_108104432_108104569_108105114_108105220_108107582_108107631_108109998_108110050_108113067
ENSMUSG00000019907.11_4	chr10	+	5294	24	NIC	ENSMUSG00000019907.11	novel	3403	26	NA	NA	-66	-592	combination_of_known_junctions	TRUE	canonical	3	31	junction_12	49.5296210851579	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTGAACTTTTAATG	NA	False	NA	8	True	AATAAA	-44	NA	107997987	108115253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108089185_108089357_108095616_108095708_108096696_108096898_108097105_108097278_108098170_108098293_108100563_108100630_108103264_108103282_108104432_108104569_108105114_108105220_108107582_108107631_108109998_108110050_108113067
ENSMUSG00000019907.11_65	chr10	+	1843	1	ISM	ENSMUSG00000019907.11	ENSMUST00000219759.2	4212	15	28202	346	9226	-346	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAGAATCTGAGAGCTAG	NA	False	NA	-1	True	CATAAA	-10	NA	108113656	108115499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_108113700_108115500
ENSMUSG00000019916.15_0	chr10	+	2621	15	FSM	ENSMUSG00000019916.15	ENSMUST00000105466.3	2918	15	2	295	2	0	multi-exon	FALSE	canonical	3	143	junction_7	20.6288880070682	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTCTCTGTGTGGTAT	NA	False	NA	18	True	NA	NA	NA	59159191	59207778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
ENSMUSG00000019916.15_5	chr10	+	2622	15	FSM	ENSMUSG00000019916.15	ENSMUST00000009789.15	4043	15	73	1348	1	0	multi-exon	FALSE	canonical	3	22	junction_8	56.7996838163088	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTCTCTGTGTGGTAT	NA	False	NA	18	True	NA	NA	NA	59159190	59207778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59190161_59190233_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
ENSMUSG00000019917.11_1	chr10	-	3746	9	NNC	ENSMUSG00000019917.11	novel	2532	10	NA	NA	356	-1	intron_retention	FALSE	canonical	2	11	junction_8	14.6495520409329	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAATCTATGTATTTCCTA	NA	False	NA	-30	True	AATAAA	-14	NA	59057313	58999942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057200
ENSMUSG00000019917.11_2	chr10	-	2186	10	NNC	ENSMUSG00000019917.11	novel	2532	10	NA	NA	364	6	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_9	15.7181973646809	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATTTCCTAAAATGTG	NA	False	NA	-23	True	AATAAA	-21	NA	59057305	58999935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_59000767_59002325_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057200
ENSMUSG00000019917.11_3	chr10	-	2734	3	ISM	ENSMUSG00000019917.11	ENSMUST00000218171.2	1051	4	1987	-1926	1987	6	3prime_fragment	FALSE	canonical	3	43	junction_1	10.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATTTCCTAAAATGTG	NA	False	NA	-23	True	AATAAA	-21	NA	59012692	58999935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_59002514_59006635_59006769_59012669
ENSMUSG00000019917.11_4	chr10	-	2175	10	FSM	ENSMUSG00000019917.11	ENSMUST00000165971.3	2532	10	357	0	357	0	multi-exon	FALSE	canonical	3	22	junction_1	10.8639169436269	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCTATGTATTTCCTAA	NA	False	NA	-29	True	AATAAA	-15	NA	59057312	58999941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_59000767_59002325_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
ENSMUSG00000019917.11_5	chr10	-	3739	9	ISM	ENSMUSG00000019917.11	ENSMUST00000220156.2	1821	10	351	22494	351	-1	5prime_fragment	FALSE	canonical	3	43	junction_1	6.39824194603486	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAATCTATGTATTTCCTA	NA	False	NA	-30	True	AATAAA	-14	NA	59057318	58999942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
ENSMUSG00000019917.11_6	chr10	-	566	1	ISM	ENSMUSG00000019917.11	ENSMUST00000165971.3	2532	10	57161	1	14171	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAATCTATGTATTTCCTA	NA	False	NA	-30	True	AATAAA	-14	NA	59000508	58999942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_58999900_59000500
ENSMUSG00000019920.19_0	chr10	+	4207	10	FSM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	113	7	113	-7	multi-exon	FALSE	canonical	3	235	junction_4	23.8875968642854	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATAGTGTGTTACATAT	NA	False	NA	3	True	AATAAA	-12	NA	58159400	58260506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
ENSMUSG00000019920.19_18	chr10	+	2185	1	ISM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	99034	7	5857	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATAGTGTGTTACATAT	2820	False	NA	3	True	AATAAA	-12	NA	58258321	58260506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_58258300_58260500
ENSMUSG00000019923.15_0	chr10	+	1792	8	FSM	ENSMUSG00000019923.15	ENSMUST00000020081.11	1834	8	38	4	-12	-4	multi-exon	FALSE	canonical	3	928	junction_7	94.1772102940808	1128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATCCAGTGTCCTTGTTG	NA	False	NA	6	True	AATAAA	-19	NA	72490714	72510792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797
ENSMUSG00000019923.15_1	chr10	+	1145	8	FSM	ENSMUSG00000019923.15	ENSMUST00000160337.2	1138	8	-7	0	-6	0	multi-exon	FALSE	canonical	3	212	junction_7	327.562862014955	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTGATGTTGTTGT	NA	False	NA	13	True	ATTAAA	-14	NA	72490720	72504997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72504643
ENSMUSG00000019927.7_0	chr10	-	1385	7	FSM	ENSMUSG00000019927.7	ENSMUST00000020085.7	1431	7	43	3	-1	-3	multi-exon	FALSE	canonical	3	135	junction_2	5.39804491356722	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCGTCTTGACTACTTAAT	NA	False	NA	-3	True	AATAAA	-15	NA	71121049	71090812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_71091705_71092444_71092539_71094030_71094137_71095571_71095650_71097913_71097946_71098028_71098093_71120930
ENSMUSG00000019942.14_0	chr10	-	1192	8	FSM	ENSMUSG00000019942.14	ENSMUST00000020099.13	4375	8	24	3159	-4	19	multi-exon	TRUE	canonical	3	2056	junction_1	102.156542539739	1011	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCACTGTGGTGGCTG	NA	False	NA	-9	True	AATATA	-16	NA	69188744	69174134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
ENSMUSG00000019943.11_1	chr10	+	4972	21	NIC	ENSMUSG00000019943.11	novel	1404	6	NA	NA	262	256	combination_of_known_junctions	FALSE	canonical	3	221	junction_9	23.8756675299352	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTTTAGTCTTTTTTTT	NA	False	NA	9	True	ATTAAA	-18	NA	98750529	98859941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265_98845446_98846063_98846152_98846535_98846643_98850320_98850513_98850745_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
ENSMUSG00000019943.11_12	chr10	+	5081	21	FSM	ENSMUSG00000019943.11	ENSMUST00000020107.8	7130	21	-15	2064	-15	256	multi-exon	FALSE	canonical	3	93	junction_1	42.6978922196401	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTTTAGTCTTTTTTTT	NA	False	NA	9	True	ATTAAA	-18	NA	98750998	98859941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_98751234_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265_98845446_98846063_98846152_98846535_98846643_98850320_98850513_98850745_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
ENSMUSG00000019943.11_37	chr10	+	4907	20	ISM	ENSMUSG00000019943.11	ENSMUST00000020107.8	7130	21	53736	1809	-17243	511	3prime_fragment	FALSE	canonical	3	221	junction_8	24.4955759474487	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAGCTCAGCTCCTTGGT	5833	False	NA	24	True	AATAAA	-41	NA	98804749	98860196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265_98845446_98846063_98846152_98846535_98846643_98850320_98850513_98850745_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
ENSMUSG00000019943.11_64	chr10	+	2468	1	ISM	ENSMUSG00000019943.11	ENSMUST00000020107.8	7130	21	108520	4	4635	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGGGGACTGAACTTTT	NA	False	NA	8	True	AATAAA	-20	NA	98859533	98862001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_98859500_98862000
ENSMUSG00000019944.15_1	chr10	+	4439	11	FSM	ENSMUSG00000019944.15	ENSMUST00000067908.14	4422	11	-17	0	6	0	multi-exon	FALSE	canonical	1	2	junction_2	2.33452350598575	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAAAAATGCCTCGAC	NA	False	NA	NA	False	AATAAA	-12	NA	69049006	69127610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_69049206_69051131_69051183_69084600_69084803_69085454_69085559_69102016_69102203_69105732_69106704_69108568_69108688_69115174_69115326_69121516_69121606_69124779_69124886_69125349
ENSMUSG00000019944.15_3	chr10	+	1584	1	ISM	ENSMUSG00000019944.15	ENSMUST00000020101.12	4352	11	77565	9	10741	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAATGCCTCGACTT	NA	False	NA	NA	False	AATAAA	-14	NA	69126028	69127612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_69126000_69127600
ENSMUSG00000019947.11_0	chr10	-	3063	1	ISM	ENSMUSG00000019947.11	ENSMUST00000219238.2	7581	10	183153	5	41039	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGGGAGTGTCTGTCT	NA	False	NA	-9	True	AATAAA	-18	NA	67931417	67928354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_67928400_67931400
ENSMUSG00000019947.11_1	chr10	-	7019	7	FSM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-65	-3929	-65	-5	multi-exon	TRUE	canonical	3	87	junction_6	21.5303403492735	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGGGAGTGTCTGTCT	NA	False	NA	-9	True	AATAAA	-18	NA	67972521	67928354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_67934500_67937724_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
ENSMUSG00000019947.11_2	chr10	-	7555	10	FSM	ENSMUSG00000019947.11	ENSMUST00000219238.2	7581	10	21	5	2	-5	multi-exon	FALSE	canonical	3	31	junction_9	46.8506953451172	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGGGAGTGTCTGTCT	5347	False	NA	-9	True	AATAAA	-18	NA	68114549	67928354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_67934500_67937724_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_68021855_68022087_68078833_68079060_68113759_68114015_68114519
ENSMUSG00000019948.5_0	chr10	-	1698	11	FSM	ENSMUSG00000019948.5	ENSMUST00000020109.5	1705	11	5	2	5	-2	multi-exon	FALSE	canonical	3	269	junction_5	22.702422778197	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATCTGTTTAATGTT	NA	False	NA	-20	True	AATAAA	-19	NA	89568152	89547834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
ENSMUSG00000019948.5_2	chr10	-	1573	10	NIC	ENSMUSG00000019948.5	novel	1705	11	NA	NA	6	-8	combination_of_known_junctions	FALSE	canonical	3	25	junction_9	88.0716599363871	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTAAATATATCTGTTT	NA	False	NA	-26	True	AATAAA	-13	NA	89568151	89547840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89568035
ENSMUSG00000019951.11_0	chr10	+	6409	21	FSM	ENSMUSG00000019951.11	ENSMUST00000020112.7	6448	21	21	18	21	-18	multi-exon	FALSE	canonical	3	116	junction_11	11.4144645078076	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGCTGAGCATTCAATA	NA	False	NA	3	True	TATAAA	-14	NA	89580873	89655715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_89581151_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89630344_89630487_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644523_89645489_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
ENSMUSG00000019951.11_38	chr10	+	3769	8	ISM	ENSMUSG00000019951.11	ENSMUST00000020112.7	6448	21	60399	4	-1325	-4	3prime_fragment	FALSE	canonical	3	122	junction_6	9.45235096552758	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATATACTTTGTCCGATT	NA	False	NA	17	True	TATAAA	-28	NA	89641251	89655729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_89642076_89642485_89642659_89644379_89644523_89645489_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
ENSMUSG00000019951.11_5	chr10	+	6554	22	NIC	ENSMUSG00000019951.11	novel	6448	21	NA	NA	19	-9	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	36.4327728669602	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATTCAATATACTTTGTC	NA	False	NA	12	True	TATAAA	-23	NA	89580871	89655724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_89581151_89591282_89591417_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89630344_89630487_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644523_89645489_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
ENSMUSG00000019951.11_7	chr10	+	6406	21	NIC	ENSMUSG00000019951.11	novel	6448	21	NA	NA	21	-6	combination_of_known_junctions	FALSE	canonical	1	3	junction_17	30.3006188055624	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAATATACTTTGTCCGA	NA	False	NA	15	True	TATAAA	-26	NA	89580873	89655727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_89581151_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89630344_89630487_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644523_89645489_89645626_89647348_89647603_89647905_89648015_89651901_89652084_89653796
ENSMUSG00000019952.16_0	chr10	+	2861	12	FSM	ENSMUSG00000019952.16	ENSMUST00000020113.15	2862	12	80	-79	13	-7	multi-exon	FALSE	canonical	3	64	junction_11	10.2158522093674	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATCAATGTCTTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	98942977	99033929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_98943086_98943653_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028643_99028860_99032487
ENSMUSG00000019952.16_13	chr10	+	1289	1	ISM	ENSMUSG00000019952.16	ENSMUST00000159990.2	3449	11	89676	7	3887	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATCAATGTCTTCTC	7224	False	NA	NA	False	AATAAA	-17	NA	99032640	99033929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_99032600_99033900
ENSMUSG00000019952.16_7	chr10	+	3333	11	FSM	ENSMUSG00000019952.16	ENSMUST00000159990.2	3449	11	109	7	109	-7	multi-exon	FALSE	canonical	3	64	junction_10	9.48946784598589	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATCAATGTCTTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	98943073	99033929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028643_99028860_99032487
ENSMUSG00000019960.9_0	chr10	+	2719	3	FSM	ENSMUSG00000019960.9	ENSMUST00000020118.5	2796	3	72	5	72	-5	multi-exon	TRUE	canonical	2	10	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGCGTGTTTTTATTT	NA	False	NA	4	True	AATAAA	-14	NA	99099164	99103345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_99099954_99100405_99100844_99101853
ENSMUSG00000019961.18_0	chr10	-	3513	9	FSM	ENSMUSG00000019961.18	ENSMUST00000072239.14	3533	9	18	2	4	-2	multi-exon	FALSE	canonical	3	670	junction_4	77.1961786619001	1229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTGTTGTTGAATACA	NA	False	NA	-4	True	AATAAA	-13	NA	91007426	90983434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90989139_90989260_90994609_90994708_90999904_91000064_91001804_91001932_91006899
ENSMUSG00000019961.18_1	chr10	-	1674	1	ISM	ENSMUSG00000019961.18	ENSMUST00000072239.14	3533	9	22337	1	2588	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTGTTGTTGAATACAT	NA	False	NA	-3	True	AATAAA	-14	NA	90985107	90983433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_90983400_90985100
ENSMUSG00000019961.18_2	chr10	-	3392	8	FSM	ENSMUSG00000019961.18	ENSMUST00000092219.14	1854	8	5	-1543	5	-2	multi-exon	FALSE	canonical	3	63	junction_4	263.470092792177	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTGTTGTTGAATACA	NA	False	NA	-4	True	AATAAA	-13	NA	91007425	90983434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90994609_90994708_90999904_91000064_91001804_91001932_91006899
ENSMUSG00000019961.18_4	chr10	-	3180	6	FSM	ENSMUSG00000019961.18	ENSMUST00000105293.11	1842	6	-12	-1326	4	-8	multi-exon	FALSE	canonical	3	37	junction_2	321.134862635622	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCTAGTTTTGTTGTTG	NA	False	NA	-10	True	AATAAA	-7	NA	91007426	90983440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_90985621_90987570_90987660_90994609_90994708_90999904_91000064_91001804_91001932_91006899
ENSMUSG00000019961.18_43	chr10	-	3757	4	FSM	ENSMUSG00000019961.18	ENSMUST00000020123.7	3772	4	13	2	3	0	multi-exon	FALSE	canonical	3	173	junction_1	318.417266421838	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGTTTTGTGTGGTCTCC	NA	False	NA	-20	True	AATAAA	-14	NA	91007427	90996280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_90999224_90999904_91000064_91001804_91001932_91006899
ENSMUSG00000019961.18_44	chr10	-	1884	1	ISM	ENSMUSG00000019961.18	ENSMUST00000020123.7	3772	4	9276	2	8160	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGTTTTGTGTGGTCTCC	9157	False	NA	-20	True	AATAAA	-14	NA	90998164	90996280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_90996300_90998200
ENSMUSG00000019966.19_0	chr10	+	5441	10	FSM	ENSMUSG00000019966.19	ENSMUST00000105283.9	5648	10	196	11	0	-11	multi-exon	FALSE	canonical	2	4	junction_9	4.46661138716484	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATCATAAATCTGCCCTC	NA	False	NA	NA	False	AATAAA	-12	NA	99851687	99936267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_99851898_99887707_99887822_99899945_99900009_99912596_99912768_99915835_99915993_99916718_99916803_99923208_99923319_99924014_99924083_99925057_99925134_99931879
ENSMUSG00000019966.19_1	chr10	+	5363	9	FSM	ENSMUSG00000019966.19	ENSMUST00000020129.8	1260	9	-90	-4013	0	-5	multi-exon	FALSE	canonical	2	2	junction_5	5.02338282435253	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATCTGCCCTCTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	99851687	99936273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_99851898_99887707_99887822_99899945_99900009_99912596_99912768_99915835_99915993_99923208_99923319_99924014_99924083_99925057_99925134_99931879
ENSMUSG00000019969.15_0	chr12	+	2660	12	FSM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	28	2	8	-2	multi-exon	FALSE	canonical	3	287	junction_9	21.5122490573192	466	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCGCTCTCTGTCCTGGCT	3373	False	NA	7	True	ATTAAA	-18	NA	83734953	83781867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689
ENSMUSG00000019970.16_1	chr10	+	2596	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	3	3	3	2	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATAAATTGTGTCATGTG	NA	False	NA	10	True	AATAAA	-16	NA	21854573	21875794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ENSMUSG00000019970.16_11	chr10	+	2476	12	FSM	ENSMUSG00000019970.16	ENSMUST00000100036.10	2476	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	266.915376443206	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21868121	21875797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_21868307_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ENSMUSG00000019970.16_13	chr10	+	2424	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	21	11	4	1	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCATAAATTGTGTCAT	NA	False	NA	7	True	AATAAA	-13	NA	21870585	21875791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ENSMUSG00000019970.16_20	chr10	+	929	1	ISM	ENSMUSG00000019970.16	ENSMUST00000120509.8	3096	14	116780	1	2373	1	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCATAAATTGTGTCAT	NA	False	NA	7	True	AATAAA	-13	NA	21874862	21875791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_21874900_21875800
ENSMUSG00000019971.11_1	chr10	+	8135	53	NIC	ENSMUSG00000019971.11	novel	8211	54	NA	NA	46	-9	combination_of_known_junctions	FALSE	canonical	3	23	junction_17	7.43263633176255	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAAAAGCACAGTCATAAT	NA	False	NA	NA	False	ATTAAA	-13	NA	100323465	100409508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_100323615_100324140_100324271_100324423_100324502_100325181_100325252_100326008_100326056_100328509_100328654_100330762_100330817_100331684_100331838_100332550_100332734_100333801_100333892_100334923_100335047_100336008_100336133_100336964_100337138_100344525_100344689_100346348_100346450_100346523_100346612_100348148_100348262_100349781_100349867_100350319_100350463_100350995_100351161_100352015_100352166_100353638_100353755_100354315_100354419_100354506_100354738_100359091_100359266_100364410_100364523_100365879_100366086_100366962_100367115_100372667_100372780_100373297_100373754_100374787_100374953_100375845_100375954_100376197_100376333_100377411_100377679_100378278_100378387_100379103_100379304_100380778_100380993_100382236_100382375_100384589_100384812_100385114_100385238_100387225_100387372_100387678_100387835_100390272_100390397_100393932_100394068_100395466_100395554_100397101_100397267_100397970_100398094_100399127_100399301_100402872_100403015_100403942_100404017_100404676_100404772_100407924_100408005_100408741
ENSMUSG00000019971.11_18	chr10	+	2950	17	ISM	ENSMUSG00000019971.11	ENSMUST00000219643.2	2738	18	506	-265	506	-9	3prime_fragment	FALSE	canonical	3	28	junction_1	6.53087618547466	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAAAAGCACAGTCATAAT	NA	False	NA	NA	False	ATTAAA	-13	NA	100380792	100409508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_100380993_100382236_100382375_100384589_100384812_100385114_100385238_100387225_100387372_100387678_100387835_100390272_100390397_100393932_100394068_100395466_100395554_100397101_100397267_100397970_100398094_100399127_100399301_100402872_100403015_100403942_100404017_100404676_100404772_100407924_100408005_100408741
ENSMUSG00000019971.11_19	chr10	+	2761	16	ISM	ENSMUSG00000019971.11	ENSMUST00000219643.2	2738	18	1948	-274	1948	0	3prime_fragment	FALSE	canonical	3	33	junction_6	5.75577005177317	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTCATAATTGTTCAGGT	NA	False	NA	NA	False	ATTAAA	-22	NA	100382234	100409517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_100382375_100384589_100384812_100385114_100385238_100387225_100387372_100387678_100387835_100390272_100390397_100393932_100394068_100395466_100395554_100397101_100397267_100397970_100398094_100399127_100399301_100402872_100403015_100403942_100404017_100404676_100404772_100407924_100408005_100408741
ENSMUSG00000019971.11_33	chr10	+	4103	24	ISM	ENSMUSG00000019971.11	ENSMUST00000219765.2	7985	52	49450	6	-2715	-6	3prime_fragment	FALSE	canonical	3	27	junction_4	6.8994945158808	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCACAGTCATAATTGT	7078	False	NA	NA	False	ATTAAA	-16	NA	100373600	100409511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_100373754_100374787_100374953_100375845_100375954_100376197_100376333_100377411_100377679_100378278_100378387_100379103_100379304_100380778_100380993_100382236_100382375_100384589_100384812_100385114_100385238_100387225_100387372_100387678_100387835_100390272_100390397_100393932_100394068_100395466_100395554_100397101_100397267_100397970_100398094_100399127_100399301_100402872_100403015_100403942_100404017_100404676_100404772_100407924_100408005_100408741
ENSMUSG00000019975.13_0	chr10	+	3241	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020149.6	3232	3	-12	3	-12	-3	multi-exon	FALSE	canonical	3	50	junction_2	27	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATATAGAGAGTACTGTC	743	False	NA	10	True	AATAAA	-16	NA	90918906	90934516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_90919159_90929000_90929119_90931645
ENSMUSG00000019975.13_3	chr10	+	1223	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020150.10	1328	3	105	0	-12	0	multi-exon	FALSE	canonical	3	39	junction_2	32.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTATTTTGCTCCATAAT	743	False	NA	12	True	AATAAA	-17	NA	90918906	90938469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_90919159_90929000_90929119_90937616
ENSMUSG00000019975.13_7	chr10	+	2058	1	ISM	ENSMUSG00000019975.13	ENSMUST00000020149.6	3232	3	13543	0	625	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAGAGAGTACTGTCCAT	NA	False	NA	13	True	AATAAA	-19	NA	90932461	90934519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_90932500_90934500
ENSMUSG00000019977.17_1	chr10	+	2748	18	FSM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	-15	0	0	0	multi-exon	FALSE	canonical	3	828	junction_14	97.3053197904183	1532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTGCAAAAATGTGT	NA	False	NA	12	True	AATAAA	-14	NA	21171916	21244782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
ENSMUSG00000019977.17_4	chr10	+	2634	5	FSM	ENSMUSG00000019977.17	ENSMUST00000092674.14	2625	5	-20	11	0	-8	multi-exon	FALSE	canonical	3	88	junction_4	452.231688407613	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGAAGTATGTTTGCAT	NA	False	NA	NA	False	AATAAA	-13	NA	21171916	21187097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997
ENSMUSG00000019977.17_5	chr10	+	2742	18	FSM	ENSMUSG00000019977.17	ENSMUST00000020153.10	2793	18	36	15	-3	0	multi-exon	FALSE	canonical	3	89	junction_4	231.196571495514	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTGCAAAAATGTGT	NA	False	NA	12	True	AATAAA	-14	NA	21171913	21244782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212874_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
ENSMUSG00000019978.17_0	chr10	+	4311	20	FSM	ENSMUSG00000019978.17	ENSMUST00000053748.16	4385	20	72	2	14	0	multi-exon	FALSE	canonical	3	27	junction_12	117.367122957183	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	25235767	25399411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25369464_25369528_25371342_25371490_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
ENSMUSG00000019978.17_1	chr10	+	4101	18	FSM	ENSMUSG00000019978.17	ENSMUST00000218903.2	4115	18	14	0	14	0	multi-exon	FALSE	canonical	3	273	junction_1	40.1674694938122	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	25235767	25399411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
ENSMUSG00000019978.17_73	chr10	+	3908	17	ISM	ENSMUSG00000019978.17	ENSMUST00000218903.2	4115	18	81798	0	43	0	3prime_fragment	FALSE	canonical	3	276	junction_4	37.917622469638	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	25317551	25399411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
ENSMUSG00000019978.17_98	chr10	+	2017	6	ISM	ENSMUSG00000019978.17	ENSMUST00000092645.7	4280	20	93633	5	10	1	3prime_fragment	FALSE	canonical	3	365	junction_1	14.319217855735	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGTGTCACTTCTCTT	312	False	NA	NA	False	AATAAA	-15	NA	25377898	25399412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
ENSMUSG00000019979.13_11	chr10	-	6536	27	FSM	ENSMUSG00000019979.13	ENSMUST00000020157.13	6577	27	41	0	-25	0	multi-exon	TRUE	canonical	3	23	junction_26	18.4606169641815	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATTTTGGTTTCGGG	NA	False	NA	NA	False	AATAAA	-18	NA	90918591	90825179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_90827459_90831509_90831657_90833073_90833200_90835513_90835640_90836871_90836992_90844985_90845112_90849921_90850039_90854827_90854948_90856517_90856644_90859581_90859711_90867410_90867573_90872771_90872898_90875646_90875779_90883947_90884074_90885219_90885347_90890241_90890427_90891776_90891891_90894172_90894305_90895434_90895603_90895909_90896149_90897559_90897692_90897965_90898079_90902942_90903127_90913395_90913594_90915308_90915499_90915748_90915994_90918044
ENSMUSG00000019979.13_19	chr10	-	3573	11	ISM	ENSMUSG00000019979.13	ENSMUST00000159110.8	6433	27	50957	7	-31294	0	3prime_fragment	TRUE	canonical	3	77	junction_8	10.8609391859084	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATTTTGGTTTCGGG	NA	False	NA	NA	False	AATAAA	-18	NA	90867567	90825179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_90827459_90831509_90831657_90833073_90833200_90835513_90835640_90836871_90836992_90844985_90845112_90849921_90850039_90854827_90854948_90856517_90856644_90859581_90859711_90867410
ENSMUSG00000019979.13_2	chr10	-	6497	27	FSM	ENSMUSG00000019979.13	ENSMUST00000159110.8	6433	27	-71	7	-29	0	multi-exon	FALSE	canonical	3	61	junction_15	13.5705476423617	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATTTTGGTTTCGGG	NA	False	NA	NA	False	AATAAA	-18	NA	90918595	90825179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_90827459_90831509_90831657_90833073_90833200_90835513_90835640_90836871_90836992_90844985_90845112_90849921_90850039_90854827_90854948_90856517_90856644_90859581_90859711_90867410_90867573_90872771_90872898_90875646_90875779_90883947_90884074_90885219_90885347_90890241_90890427_90891776_90891891_90894172_90894305_90895434_90895603_90895909_90896149_90897559_90897692_90897965_90898079_90902942_90903127_90913395_90913594_90915308_90915499_90915748_90915951_90918044
ENSMUSG00000019979.13_34	chr10	-	1562	5	FSM	ENSMUSG00000019979.13	ENSMUST00000161987.8	2710	5	-304	1452	-29	46	multi-exon	FALSE	canonical	3	68	junction_4	12.1449578014911	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATATTGTTTCTATTGGA	NA	False	NA	NA	False	AATACA	-15	NA	90918595	90902705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_90903127_90913395_90913594_90915308_90915499_90915748_90915951_90918044
ENSMUSG00000019979.13_9	chr10	-	1555	1	ISM	ENSMUSG00000019979.13	ENSMUST00000159110.8	6433	27	91790	7	718	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATTTTGGTTTCGGG	NA	False	NA	NA	False	AATAAA	-18	NA	90826734	90825179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_90825200_90826700
ENSMUSG00000019982.16_2	chr10	-	3376	15	FSM	ENSMUSG00000019982.16	ENSMUST00000020158.9	3074	15	34	-336	34	-5	multi-exon	FALSE	canonical	2	3	junction_10	4.58257569495584	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTTCCTGATGTCTCT	NA	False	NA	-9	True	AATAAA	-17	NA	21036849	21000838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_21002189_21015191_21015300_21016465_21016577_21017657_21017784_21017870_21017986_21018860_21018992_21022084_21022340_21024230_21024336_21024676_21024758_21026204_21026440_21028334_21028556_21028790_21028884_21030582_21030655_21032238_21032357_21036594
ENSMUSG00000019982.16_4	chr10	-	3792	16	FSM	ENSMUSG00000019982.16	ENSMUST00000188495.8	3693	16	-104	5	-25	-5	multi-exon	FALSE	canonical	2	3	junction_11	4.59951688284276	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTTCCTGATGTCTCT	NA	False	NA	-9	True	AATAAA	-17	NA	21036908	21000838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_21002189_21015191_21015300_21016465_21016577_21017657_21017784_21017870_21017986_21018860_21018992_21020867_21021225_21022084_21022340_21024230_21024336_21024676_21024758_21026204_21026440_21028334_21028556_21028790_21028884_21030582_21030655_21032238_21032357_21036594
ENSMUSG00000019984.17_17	chr10	+	4198	25	ISM	ENSMUSG00000019984.17	ENSMUST00000020159.15	4798	29	4566	212	-2333	-212	3prime_fragment	FALSE	canonical	2	39	junction_3	9.83192080250175	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGACGTTTCATACT	NA	False	NA	8	True	AATAAA	-21	NA	24750510	24789146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
ENSMUSG00000019984.17_2	chr10	+	4816	29	FSM	ENSMUSG00000019984.17	ENSMUST00000020159.15	4798	29	-28	10	-18	-10	multi-exon	TRUE	canonical	2	39	junction_7	9.84419439392103	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGTCTGATTGCCTGACT	NA	False	NA	3	True	AATAAA	-10	NA	24745916	24789348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
ENSMUSG00000019984.17_23	chr10	+	3014	15	ISM	ENSMUSG00000019984.17	ENSMUST00000176285.2	3226	18	7355	-430	4839	-10	3prime_fragment	FALSE	canonical	2	41	junction_13	9.59698081775339	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGTCTGATTGCCTGACT	NA	False	NA	3	True	AATAAA	-10	NA	24771703	24789348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
ENSMUSG00000019984.17_43	chr10	+	1712	8	ISM	ENSMUSG00000019984.17	ENSMUST00000176285.2	3226	18	15839	-222	13323	-218	3prime_fragment	FALSE	canonical	2	41	junction_6	11.3064908213768	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGGAACAAAGGACGTTT	NA	False	NA	2	True	AATAAA	-15	NA	24780187	24789140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
ENSMUSG00000019986.18_0	chr10	+	4766	24	FSM	ENSMUSG00000019986.18	ENSMUST00000105525.12	4851	24	84	1	6	0	multi-exon	FALSE	canonical	3	12	junction_5	6.91700734047638	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCCTGGTTTCTTTCTTT	NA	False	NA	15	True	AATAAA	-20	NA	20828529	20956327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_20828652_20835510_20835980_20838963_20839134_20839571_20839792_20841415_20841609_20841824_20841921_20844886_20845073_20846747_20846901_20847922_20848056_20852895_20853020_20855278_20855509_20857222_20857330_20860203_20860323_20862868_20863000_20864442_20864584_20876404_20876605_20883650_20883678_20893811_20893933_20917084_20917141_20930879_20931043_20934051_20934150_20948441_20948501_20950273_20950377_20954982
ENSMUSG00000019986.18_13	chr10	+	4393	23	ISM	ENSMUSG00000019986.18	ENSMUST00000105525.12	4851	24	7314	3	177	-2	3prime_fragment	FALSE	canonical	3	12	junction_4	7.01120708533049	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCTCCTGGTTTCTTTCT	NA	False	NA	13	True	AATAAA	-18	NA	20835759	20956325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_20835980_20838963_20839134_20839571_20839792_20841415_20841609_20841824_20841921_20844886_20845073_20846747_20846901_20847922_20848056_20852895_20853020_20855278_20855509_20857222_20857330_20860203_20860323_20862868_20863000_20864442_20864584_20876404_20876605_20883650_20883678_20893811_20893933_20917084_20917141_20930879_20931043_20934051_20934150_20948441_20948501_20950273_20950377_20954982
ENSMUSG00000019986.18_14	chr10	+	2797	14	ISM	ENSMUSG00000019986.18	ENSMUST00000105525.12	4851	24	26936	1	19799	0	3prime_fragment	FALSE	canonical	3	12	junction_10	6.51443549530466	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCCTGGTTTCTTTCTTT	NA	False	NA	15	True	AATAAA	-20	NA	20855381	20956327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_20855509_20857222_20857330_20860203_20860323_20862868_20863000_20864442_20864584_20876404_20876605_20883650_20883678_20893811_20893933_20917084_20917141_20930879_20931043_20934051_20934150_20948441_20948501_20950273_20950377_20954982
ENSMUSG00000019986.18_15	chr10	+	4731	3	ISM	ENSMUSG00000019986.18	ENSMUST00000163505.3	2067	7	28498	1	-527	-1	3prime_fragment	FALSE	canonical	3	20	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTCCTGGTTTCTTTCTT	NA	False	NA	14	True	AATAAA	-19	NA	20945216	20956326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_20948501_20950273_20950377_20954982
ENSMUSG00000019986.18_17	chr10	+	4836	23	NIC	ENSMUSG00000019986.18	novel	4851	24	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	8.20048375916308	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCCTGGTTTCTTTCTTT	NA	False	NA	15	True	AATAAA	-20	NA	20828432	20956327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_20828652_20835510_20835980_20838963_20839134_20839571_20839792_20841415_20841609_20841824_20841921_20844886_20845073_20846747_20846901_20847922_20848056_20852895_20853020_20855278_20855509_20857222_20857330_20860203_20860323_20862868_20863000_20864442_20864584_20876404_20876605_20893811_20893933_20917084_20917141_20930879_20931043_20934051_20934150_20948441_20948501_20950273_20950377_20954982
ENSMUSG00000019986.18_19	chr10	+	3594	17	NIC	ENSMUSG00000019986.18	novel	4851	24	NA	NA	-21	-51783	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	8.16911102874725	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGACCACTAATTATTT	NA	False	NA	NA	False	AATAAA	-16	NA	20828502	20894584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_20828652_20835510_20835980_20838963_20839134_20839571_20839792_20841415_20841609_20841824_20841921_20844886_20845073_20846747_20846901_20847922_20848056_20852895_20853020_20855278_20855509_20857222_20857330_20860203_20860323_20862868_20863000_20864442_20864584_20876404_20876605_20893811
ENSMUSG00000019986.18_2	chr10	+	3589	18	ISM	ENSMUSG00000019986.18	ENSMUST00000105525.12	4851	24	84	61749	6	-51788	5prime_fragment	FALSE	canonical	3	12	junction_5	6.24859845877153	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGTAAACTGACCACTAAT	NA	False	NA	NA	False	AATAAA	-11	NA	20828529	20894579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_20828652_20835510_20835980_20838963_20839134_20839571_20839792_20841415_20841609_20841824_20841921_20844886_20845073_20846747_20846901_20847922_20848056_20852895_20853020_20855278_20855509_20857222_20857330_20860203_20860323_20862868_20863000_20864442_20864584_20876404_20876605_20883650_20883678_20893811
ENSMUSG00000019986.18_31	chr10	+	5516	2	NIC	ENSMUSG00000019986.18	novel	2067	7	NA	NA	459	-3	intron_retention	FALSE	canonical	3	21	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGCTCCTGGTTTCTTTC	NA	False	NA	12	True	AATAAA	-17	NA	20946202	20956324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_20950377_20954982
ENSMUSG00000019986.18_4	chr10	+	1835	2	ISM	ENSMUSG00000019986.18	ENSMUST00000105525.12	4851	24	83	119106	5	7324	5prime_fragment	FALSE	canonical	3	27	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAATAGTTTGGTCTAT	NA	False	NA	NA	False	NA	NA	NA	20828528	20837222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_20828652_20835510
ENSMUSG00000019988.8_1	chr10	-	3477	15	FSM	ENSMUSG00000019988.8	ENSMUST00000020163.7	3534	15	50	7	-7	-7	multi-exon	FALSE	canonical	3	126	junction_9	20.2858400398517	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTAGACAGTCTGAGC	NA	False	NA	-8	True	AATAAA	-12	NA	92558232	92520614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_92522158_92522581_92522649_92525496_92525654_92526489_92526647_92527695_92527899_92528749_92528798_92530841_92530971_92534031_92534228_92534587_92534790_92536581_92536812_92547032_92547174_92549935_92550053_92552027_92552123_92555347_92555492_92558184
ENSMUSG00000019988.8_10	chr10	-	3247	14	NIC	ENSMUSG00000019988.8	novel	3534	15	NA	NA	-7	-7	combination_of_known_splicesites	FALSE	canonical	1	2	junction_9	47.0005665331586	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTAGACAGTCTGAGC	NA	False	NA	-8	True	AATAAA	-12	NA	92558232	92520614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_92522158_92522581_92522649_92525496_92525654_92526489_92526647_92527695_92527899_92528749_92528798_92530841_92530971_92534031_92534228_92534587_92534790_92547032_92547174_92549935_92550053_92552027_92552123_92555347_92555492_92558184
ENSMUSG00000019989.9_1	chr10	-	1944	16	ISM	ENSMUSG00000019989.9	ENSMUST00000020169.9	4253	25	30186	1410	-8268	15	3prime_fragment	FALSE	canonical	1	2	junction_4	3.29983164553722	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACCTTTAGAGTCATACT	NA	False	NA	NA	False	AATAAA	-16	NA	24681937	24649713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_24649971_24650680_24650838_24652658_24652792_24653791_24653870_24654590_24654724_24660687_24660843_24662356_24662412_24663616_24663796_24667886_24667975_24669482_24669550_24671583_24671712_24673656_24673689_24674049_24674179_24675055_24675165_24680296_24680370_24681766
ENSMUSG00000019992.9_0	chr10	+	1942	7	FSM	ENSMUSG00000019992.9	ENSMUST00000169712.3	1991	7	53	-4	4	4	multi-exon	FALSE	canonical	3	158	junction_5	12.6150263134442	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGAGTATTTAACATTTCA	NA	False	NA	11	True	AATAAA	-18	NA	20223568	20237054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_20223670_20224080_20224182_20228569_20228675_20229112_20229226_20229775_20230012_20233000_20233513_20236280
ENSMUSG00000019992.9_11	chr10	+	2178	2	ISM	ENSMUSG00000019992.9	ENSMUST00000169712.3	1991	7	8587	2	8350	-2	3prime_fragment	FALSE	canonical	3	160	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGGTTGAGTATTTAAC	2312	False	NA	5	True	AATAAA	-12	NA	20232102	20237048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_20233513_20236280
ENSMUSG00000019992.9_2	chr10	+	4928	6	NIC	ENSMUSG00000019992.9	novel	1991	7	NA	NA	7	4	intron_retention	FALSE	canonical	3	160	junction_5	11.0887330205033	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGAGTATTTAACATTTCA	NA	False	NA	11	True	AATAAA	-18	NA	20223571	20237054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_20223670_20224080_20224182_20228569_20228675_20229112_20229226_20229775_20233513_20236280
ENSMUSG00000019996.18_0	chr10	+	3731	18	FSM	ENSMUSG00000019996.18	ENSMUST00000020173.16	4252	18	516	5	3	-5	multi-exon	FALSE	canonical	3	234	junction_11	29.0770364453276	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAACTTGTTCTATTTATT	NA	False	NA	9	True	ATTAAA	-14	NA	20024732	20157263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20132929_20133044_20137604_20137730_20142481_20142598_20142868_20143123_20145105_20145335_20149025_20149201_20149524_20149627_20149991_20150043_20150347_20150406_20151921_20152022_20153870_20154092_20155741
ENSMUSG00000019996.18_29	chr10	+	3348	15	ISM	ENSMUSG00000019996.18	ENSMUST00000020173.16	4252	18	96911	5	15587	-5	3prime_fragment	FALSE	canonical	3	234	junction_8	29.6135827909135	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAACTTGTTCTATTTATT	NA	False	NA	9	True	ATTAAA	-14	NA	20121127	20157263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_20121180_20122343_20122462_20126115_20126227_20132929_20133044_20137604_20137730_20142481_20142598_20142868_20143123_20145105_20145335_20149025_20149201_20149524_20149627_20149991_20150043_20150347_20150406_20151921_20152022_20153870_20154092_20155741
ENSMUSG00000019997.12_0	chr10	+	2335	5	FSM	ENSMUSG00000019997.12	ENSMUST00000020171.12	2398	5	60	3	60	-3	multi-exon	FALSE	canonical	3	24	junction_4	4.81534007106456	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAAAGGCTTGGCTGTT	NA	False	NA	2	True	AATAAA	-18	NA	24471399	24474573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_24471687_24471773_24471997_24472244_24472497_24472629_24472842_24473212
ENSMUSG00000019997.12_1	chr10	+	933	1	ISM	ENSMUSG00000019997.12	ENSMUST00000020171.12	2398	5	2301	3	1963	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAAAGGCTTGGCTGTT	NA	False	NA	2	True	AATAAA	-18	NA	24473640	24474573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_24473600_24474600
ENSMUSG00000019997.12_4	chr10	+	1970	4	ISM	ENSMUSG00000019997.12	ENSMUST00000020171.12	2398	5	512	3	174	-3	3prime_fragment	FALSE	canonical	3	24	junction_3	5.35412613473634	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAAAGGCTTGGCTGTT	NA	False	NA	2	True	AATAAA	-18	NA	24471851	24474573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_24471997_24472244_24472497_24472629_24472842_24473212
ENSMUSG00000019998.7_0	chr10	+	2158	10	FSM	ENSMUSG00000019998.7	ENSMUST00000220041.2	3435	10	13	1264	-13	-3	multi-exon	FALSE	canonical	3	188	junction_6	15.4632180063243	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTCTGAGTCCCAAGAAC	NA	False	NA	20	True	AATAAA	-22	NA	24025237	24064856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_24025307_24031132_24031283_24053063_24053134_24055014_24055109_24055823_24055962_24056760_24056814_24057415_24057513_24058666_24058740_24060884_24060968_24063525
ENSMUSG00000019998.7_19	chr10	+	1104	1	ISM	ENSMUSG00000019998.7	ENSMUST00000020174.7	2502	10	38539	2	35409	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGAGTCCCAAGAACT	NA	False	NA	21	True	AATAAA	-23	NA	24063753	24064857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_24063800_24064900
ENSMUSG00000019998.7_3	chr10	+	2160	10	NNC	ENSMUSG00000019998.7	novel	2502	10	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	68.0834636654993	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTCTGAGTCCCAAGAAC	NA	False	NA	20	True	AATAAA	-22	NA	24025229	24064856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_24025301_24031132_24031283_24053063_24053134_24055014_24055109_24055823_24055962_24056760_24056814_24057415_24057513_24058666_24058740_24060884_24060968_24063525
ENSMUSG00000020000.8_2	chr10	+	2923	12	FSM	ENSMUSG00000020000.8	ENSMUST00000095784.3	3090	12	70	97	42	-97	multi-exon	FALSE	canonical	0	0	junction_8	1.22643068756655	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTGTATTTTTCCACT	NA	False	NA	NA	False	AATAAA	-9	NA	24099484	24178591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_24099766_24120137_24120285_24128360_24128529_24128829_24128914_24155263_24155444_24155740_24155844_24157315_24157483_24158460_24158653_24160653_24160714_24162904_24163048_24176053_24176223_24177362
ENSMUSG00000020003.17_0	chr10	-	1444	10	FSM	ENSMUSG00000020003.17	ENSMUST00000020182.16	8099	10	29	6626	-9	263	multi-exon	FALSE	canonical	3	127	junction_4	9.53874490281544	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCATTTATGACATGTCA	NA	False	NA	-10	True	AATAAA	-18	NA	19783406	19736271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_19736741_19745039_19745140_19760523_19760580_19762805_19762920_19764401_19764509_19769995_19770105_19770470_19770549_19780308_19780460_19781590_19781649_19783204
ENSMUSG00000020003.17_2	chr10	-	1333	1	NIC	ENSMUSG00000020003.17	novel	8099	10	NA	NA	7814	261	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATCATTTATGACATGT	NA	False	NA	-12	True	AATAAA	-16	NA	19737606	19736273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_19736300_19737600
ENSMUSG00000020009.14_0	chr10	+	2056	7	FSM	ENSMUSG00000020009.14	ENSMUST00000020188.13	2112	7	47	9	38	-9	multi-exon	FALSE	canonical	3	26	junction_4	3.14907393794853	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAACTCACTTGGAT	NA	False	NA	8	True	AGTAAA	-9	NA	19467743	19485968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_19467946_19473163_19473279_19477067_19477232_19479501_19479681_19481981_19482169_19483004_19483130_19484884
ENSMUSG00000020009.14_1	chr10	+	5850	6	NIC	ENSMUSG00000020009.14	novel	2112	7	NA	NA	33	-9	intron_retention	FALSE	canonical	3	26	junction_3	3.44093010681705	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAACTCACTTGGAT	NA	False	NA	8	True	AGTAAA	-9	NA	19467738	19485968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_19467946_19473163_19477232_19479501_19479681_19481981_19482169_19483004_19483130_19484884
ENSMUSG00000020009.14_2	chr10	+	1998	7	FSM	ENSMUSG00000020009.14	ENSMUST00000164591.3	1974	7	-33	9	-13	-9	multi-exon	FALSE	canonical	2	3	junction_2	10.3279555898864	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAACTCACTTGGAT	NA	False	NA	8	True	AGTAAA	-9	NA	19467787	19485968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_19467946_19473163_19473265_19477067_19477232_19479501_19479681_19481981_19482169_19483004_19483130_19484884
ENSMUSG00000020014.19_0	chr10	-	3014	20	NIC	ENSMUSG00000020014.19	novel	1794	12	NA	NA	9	11	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	0.223296878269436	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGAGGAACCTCACAAAAT	NA	False	NA	NA	False	AATAAA	-27	NA	92917471	92857561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_92857932_92860874_92860997_92861312_92861400_92864453_92864581_92864901_92865031_92868747_92868825_92870532_92870684_92871280_92871416_92873675_92873759_92874674_92874841_92874929_92875112_92879090_92879290_92880888_92880991_92881115_92881230_92883795_92883940_92897323_92897383_92900942_92901115_92902568_92902713_92905690_92905797_92917126
ENSMUSG00000020015.11_0	chr10	+	3820	17	FSM	ENSMUSG00000020015.11	ENSMUST00000069965.9	3615	17	-209	4	-194	-4	multi-exon	FALSE	canonical	3	213	junction_16	22.6329405955126	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGATTTTTGTGGAG	NA	False	NA	11	True	ACTAAA	-15	NA	92996542	93077186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_92997063_93044033_93044181_93047772_93047938_93052204_93052339_93053825_93053952_93057448_93057506_93060797_93060913_93061885_93061981_93062574_93062638_93064506_93064631_93068241_93068363_93071299_93071398_93071888_93071995_93072782_93072826_93073655_93073747_93074827_93074906_93075449
ENSMUSG00000020015.11_1	chr10	+	4359	16	ISM	ENSMUSG00000020015.11	ENSMUST00000069965.9	3615	17	-206	6	-191	-6	intron_retention	FALSE	canonical	3	223	junction_1	19.4712323413	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATGTGATTTTTGTGG	NA	False	NA	9	True	ACTAAA	-13	NA	92996545	93077184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_92997063_93044033_93044181_93047772_93047938_93052204_93052339_93053825_93053952_93057448_93057506_93060797_93060913_93061885_93061981_93062574_93062638_93064506_93064631_93068241_93068363_93071299_93071398_93071888_93071995_93072782_93072826_93073655_93073747_93074827
ENSMUSG00000020017.15_0	chr10	+	1909	17	ISM	ENSMUSG00000020017.15	ENSMUST00000129421.8	5319	20	1967	2723	1932	-85	3prime_fragment	FALSE	canonical	2	6	junction_12	2.52487623459052	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACAGCCACAA	NA	False	NA	NA	False	TATAAA	-11	NA	93326596	93352443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_93326684_93326776_93326850_93326960_93327028_93327671_93327710_93328314_93328441_93330472_93330613_93332444_93332493_93333336_93333485_93334620_93334717_93334817_93334877_93336478_93336560_93339123_93339190_93339265_93339432_93343276_93343412_93349895_93350005_93350120_93350191_93352043
ENSMUSG00000020017.15_3	chr10	+	2290	20	FSM	ENSMUSG00000020017.15	ENSMUST00000129421.8	5319	20	302	2727	267	-89	multi-exon	FALSE	canonical	1	3	junction_2	3.06530942706548	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACTTAAAAAAAAAAACAGCC	NA	False	NA	NA	False	TATAAA	-7	NA	93324931	93352439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_93325240_93325735_93325797_93325901_93325930_93326608_93326684_93326776_93326850_93326960_93327028_93327671_93327710_93328314_93328441_93330472_93330613_93332444_93332493_93333336_93333485_93334620_93334717_93334817_93334877_93336478_93336560_93339123_93339190_93339265_93339432_93343276_93343412_93349895_93350005_93350120_93350191_93352043
ENSMUSG00000020018.7_0	chr10	-	446	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	49	366	49	-366	multi-exon	FALSE	canonical	3	2132	junction_3	195.841772867792	404	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGACTTGTGGACTATT	NA	False	NA	-7	True	AATAAA	-22	NA	93425519	93419256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
ENSMUSG00000020019.5_1	chr10	+	3702	10	FSM	ENSMUSG00000020019.5	ENSMUST00000020204.5	3646	10	-60	4	-60	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTTGTCTCCTGGCCA	8703	False	NA	NA	False	AATAAA	-15	NA	93476850	93583065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_93477371_93480332_93480863_93518279_93518559_93543139_93543267_93546339_93546529_93569468_93569683_93570034_93570151_93574745_93574815_93576912_93577084_93581578
ENSMUSG00000020020.9_2	chr10	+	3853	7	NIC	ENSMUSG00000020020.9	novel	2449	6	NA	NA	-1	1329	intron_retention	FALSE	canonical	3	11	junction_1	4.57043640026736	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTTACCAAATCTAGCC	NA	False	NA	NA	False	ATTAAA	-13	NA	93669678	93695279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_93669754_93679839_93679914_93681472_93682977_93686011_93686208_93688571_93688681_93691975_93692182_93693590
ENSMUSG00000020020.9_7	chr10	+	3183	5	ISM	ENSMUSG00000020020.9	ENSMUST00000216224.2	2449	6	12317	-1332	12317	1332	3prime_fragment	FALSE	canonical	3	14	junction_3	3.11247489949718	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTACCAAATCTAGCCTTT	3265	False	NA	NA	False	ATTAAA	-16	NA	93681996	93695282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_93682977_93686011_93686208_93688571_93688681_93691975_93692182_93693590
ENSMUSG00000020021.5_0	chr10	+	4619	21	FSM	ENSMUSG00000020021.5	ENSMUST00000020208.5	8044	21	90	3335	90	2133	multi-exon	FALSE	canonical	3	10	junction_10	4.04474968323134	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTGTTTCTGAGACTCA	NA	False	NA	12	True	ATTAAA	-24	NA	93871952	93977866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_93872173_93879163_93881496_93910044_93910193_93925438_93925507_93925593_93925625_93936263_93936416_93939103_93939261_93941846_93941935_93956314_93956366_93959100_93959160_93959405_93959478_93960751_93960821_93961410_93961495_93963230_93963311_93969141_93969245_93969862_93970007_93970878_93970982_93973297_93973426_93974145_93974275_93975600_93975750_93977614
ENSMUSG00000020021.5_10	chr10	+	3200	1	ISM	ENSMUSG00000020021.5	ENSMUST00000020208.5	8044	21	106137	2	8975	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTGGTGTGAAGTCCT	NA	False	NA	NA	False	AATAAA	-15	NA	93977999	93981199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_93978000_93981200
ENSMUSG00000020021.5_12	chr10	+	4183	20	ISM	ENSMUSG00000020021.5	ENSMUST00000020208.5	8044	21	7517	3335	7517	2133	3prime_fragment	FALSE	canonical	3	10	junction_9	3.88476675520967	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTGTTTCTGAGACTCA	NA	False	NA	12	True	ATTAAA	-24	NA	93879379	93977866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_93881496_93910044_93910193_93925438_93925507_93925593_93925625_93936263_93936416_93939103_93939261_93941846_93941935_93956314_93956366_93959100_93959160_93959405_93959478_93960751_93960821_93961410_93961495_93963230_93963311_93969141_93969245_93969862_93970007_93970878_93970982_93973297_93973426_93974145_93974275_93975600_93975750_93977614
ENSMUSG00000020021.5_14	chr10	+	1663	15	ISM	ENSMUSG00000020021.5	ENSMUST00000020208.5	8044	21	67246	3335	-29916	2133	3prime_fragment	FALSE	canonical	3	10	junction_4	4.26243678509591	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTGTTTCTGAGACTCA	NA	False	NA	12	True	ATTAAA	-24	NA	93939108	93977866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_93939261_93941846_93941935_93956314_93956366_93959100_93959160_93959405_93959478_93960751_93960821_93961410_93961495_93963230_93963311_93969141_93969245_93969862_93970007_93970878_93970982_93973297_93973426_93974145_93974275_93975600_93975750_93977614
ENSMUSG00000020021.5_9	chr10	+	3919	4	ISM	ENSMUSG00000020021.5	ENSMUST00000020208.5	8044	21	101504	5	4342	-5	3prime_fragment	FALSE	canonical	3	18	junction_3	3.68178700572909	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACTGCTGGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-12	NA	93973366	93981196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_93973426_93974145_93974275_93975600_93975750_93977614
ENSMUSG00000020022.18_0	chr10	+	531	4	FSM	ENSMUSG00000020022.18	ENSMUST00000179990.8	566	4	35	0	2	0	multi-exon	FALSE	canonical	3	3293	junction_3	309.018877524767	729	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCTTGTGCGTTCA	NA	False	NA	13	True	ATTAAA	-13	NA	94034900	94056810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_94034993_94035811_94035895_94039149_94039238_94056542
ENSMUSG00000020023.19_0	chr10	+	5518	4	FSM	ENSMUSG00000020023.19	ENSMUST00000065060.12	5530	4	3	9	3	-9	multi-exon	FALSE	canonical	3	5	junction_3	2.05480466765633	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTTACATTTGTCAGA	NA	False	NA	1	True	AATAAA	-16	NA	94350721	94426809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_94350967_94414284_94415202_94418135_94418272_94422589
ENSMUSG00000020023.19_1	chr10	+	994	1	ISM	ENSMUSG00000020023.19	ENSMUST00000065060.12	5530	4	72256	2850	10850	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGCTGGAGTGGAGTTG	NA	False	NA	NA	False	AATAAA	-8	NA	94422974	94423968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_94423000_94424000
ENSMUSG00000020024.8_0	chr10	+	3052	16	FSM	ENSMUSG00000020024.8	ENSMUST00000020212.6	3639	16	70	517	6	143	multi-exon	FALSE	canonical	0	0	junction_13	58.1305045183297	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTGTGTTTAATTTT	9574	False	NA	6	True	AATAAA	-15	NA	94524585	94626198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452_94564585_94573634_94573887_94575918_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606937_94622605_94622710_94624508_94624699_94625565
ENSMUSG00000020024.8_10	chr10	+	3880	7	FSM	ENSMUSG00000020024.8	ENSMUST00000220052.2	3910	7	5	25	5	-25	multi-exon	TRUE	canonical	3	151	junction_6	27.6872413456692	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAATAAAATATTTGTTAG	9525	False	NA	NA	False	AGTAAA	-6	NA	94524536	94578530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452_94564585_94573634_94573887_94575918
ENSMUSG00000020024.8_3	chr10	+	5084	15	NIC	ENSMUSG00000020024.8	novel	3639	16	NA	NA	6	143	intron_retention	FALSE	canonical	0	0	junction_12	59.0201020753064	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTGTGTTTAATTTT	9574	False	NA	6	True	AATAAA	-15	NA	94524585	94626198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452_94564585_94573634_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606937_94622605_94622710_94624508_94624699_94625565
ENSMUSG00000020024.8_43	chr10	+	3633	10	ISM	ENSMUSG00000020024.8	ENSMUST00000020212.6	3639	16	49603	517	-1827	143	3prime_fragment	FALSE	canonical	0	0	junction_7	71.5600412672662	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTGTGTTTAATTTT	5982	False	NA	6	True	AATAAA	-15	NA	94574118	94626198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606937_94622605_94622710_94624508_94624699_94625565
ENSMUSG00000020027.19_22	chr10	-	2169	3	FSM	ENSMUSG00000020027.19	ENSMUST00000020215.16	2222	3	37	16	37	-16	multi-exon	FALSE	canonical	3	447	junction_2	23.5	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAGTTGCACTCATTACT	NA	False	NA	-14	True	AATAAA	-16	NA	95252682	95247367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_95248973_95250692_95251054_95252479
ENSMUSG00000020027.19_23	chr10	-	2128	3	FSM	ENSMUSG00000020027.19	ENSMUST00000172070.8	2153	3	4	21	4	-21	multi-exon	FALSE	canonical	3	27	junction_2	233.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTACAAGTTGCACTCA	NA	False	NA	-19	True	AATAAA	-11	NA	95251342	95247372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_95248973_95250692_95251054_95251175
ENSMUSG00000020027.19_26	chr10	-	3332	2	NIC	ENSMUSG00000020027.19	novel	2222	3	NA	NA	54	374	intron_retention	FALSE	canonical	3	447	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACCAAAAAAAGGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95252665	95247907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_95251054_95252479
ENSMUSG00000020027.19_27	chr10	-	1978	2	FSM	ENSMUSG00000020027.19	ENSMUST00000119917.2	948	2	81	-1111	81	-15	multi-exon	FALSE	canonical	3	494	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTTGCACTCATTACTT	NA	False	NA	-13	True	AATAAA	-17	NA	95251064	95247366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_95248973_95250692
ENSMUSG00000020027.19_3	chr10	-	1818	5	NIC	ENSMUSG00000020027.19	novel	4242	5	NA	NA	35	289	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	175.888281303787	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTGTGAAAAGGGCTG	NA	False	NA	NA	False	NA	NA	NA	95252684	95223239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_95224258_95224751_95224905_95226426_95226508_95250692_95251054_95252479
ENSMUSG00000020027.19_30	chr10	-	2558	1	NIC	ENSMUSG00000020027.19	novel	2153	3	NA	NA	228	378	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95250461	95247903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_95247900_95250500
ENSMUSG00000020029.7_0	chr10	-	3203	5	NNC	ENSMUSG00000020029.7	novel	3210	5	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	canonical	3	194	junction_2	214.72307747422	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAACCTCTGTATGTTTA	NA	False	NA	-31	True	AATAAA	-6	NA	95400008	95382878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_95385353_95385637_95385726_95387310_95387356_95388347_95388459_95399523
ENSMUSG00000020029.7_13	chr10	-	1770	1	ISM	ENSMUSG00000020029.7	ENSMUST00000020217.7	3210	5	15360	10	15360	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAACCTCTGTATGTTTA	NA	False	NA	-31	True	AATAAA	-6	NA	95384648	95382878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_95382900_95384600
ENSMUSG00000020029.7_2	chr10	-	3200	5	FSM	ENSMUSG00000020029.7	ENSMUST00000020217.7	3210	5	0	10	0	-10	multi-exon	FALSE	canonical	3	479	junction_2	92.7937902017156	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAACCTCTGTATGTTTA	NA	False	NA	-31	True	AATAAA	-6	NA	95400008	95382878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_95385353_95385637_95385723_95387310_95387356_95388347_95388459_95399523
ENSMUSG00000020032.15_0	chr10	-	1797	1	ISM	ENSMUSG00000020032.15	ENSMUST00000020220.15	5558	7	67888	8	19679	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGAACCAGGGCCTTGT	NA	False	NA	NA	False	AATAAA	-8	NA	84208573	84206776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_84206800_84208600
ENSMUSG00000020034.8_0	chr10	+	2442	10	FSM	ENSMUSG00000020034.8	ENSMUST00000020223.8	2725	10	271	12	0	-12	multi-exon	FALSE	canonical	2	4	junction_1	3.1308895119123	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGAAGACATGGTAATC	NA	False	NA	NA	False	AATAAA	-10	NA	84412760	84450211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_84412877_84420611_84420920_84422967_84423104_84425747_84425869_84426951_84427173_84430511_84430649_84440370_84440553_84440749_84440932_84444328_84444502_84449345
ENSMUSG00000020034.8_1	chr10	+	1857	6	ISM	ENSMUSG00000020034.8	ENSMUST00000020223.8	2725	10	14366	12	-3661	-12	3prime_fragment	FALSE	canonical	2	6	junction_2	2.36643191323985	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGAAGACATGGTAATC	NA	False	NA	NA	False	AATAAA	-10	NA	84426855	84450211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_84427173_84430511_84430649_84440370_84440553_84440749_84440932_84444328_84444502_84449345
ENSMUSG00000020038.11_0	chr10	-	3008	13	FSM	ENSMUSG00000020038.11	ENSMUST00000020227.11	3026	13	12	6	12	-6	multi-exon	FALSE	canonical	3	194	junction_12	27.3651999200932	482	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGAATCTCGTGTACTTGT	NA	False	NA	-11	True	ATTAAA	-13	NA	85020916	84967569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_84968172_84968914_84969023_84969105_84969178_84978879_84979033_84979502_84979706_84980017_84980170_84982207_84982520_84982599_84982741_84983770_84983860_84984477_84984663_84987076_84987220_84992949_84993059_85020177
ENSMUSG00000020042.16_0	chr10	+	5743	17	FSM	ENSMUSG00000020042.16	ENSMUST00000105307.8	5788	17	42	3	29	0	multi-exon	TRUE	canonical	3	26	junction_1	8.15379512865022	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTGCATCCTCTTTAT	NA	False	NA	10	True	ATTAAA	-15	NA	85222719	85496153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_85224343_85382305_85382456_85397368_85397574_85434588_85434742_85460766_85460933_85463060_85463151_85465075_85465178_85466951_85467046_85467156_85467293_85467952_85468174_85469547_85469727_85476366_85476473_85481351_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
ENSMUSG00000020042.16_10	chr10	+	3941	15	FSM	ENSMUSG00000020042.16	ENSMUST00000105306.3	3945	15	-1	5	-1	-2	multi-exon	FALSE	canonical	0	0	junction_1	12.689582743498	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGTTTGCATCCTCTTT	NA	False	NA	8	True	ATTAAA	-13	NA	85434263	85496151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_85434442_85434588_85434742_85460766_85460933_85463060_85463151_85465075_85465178_85466951_85467046_85467156_85467293_85467952_85468174_85469547_85469727_85476366_85476473_85481351_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
ENSMUSG00000020042.16_14	chr10	+	3595	13	ISM	ENSMUSG00000020042.16	ENSMUST00000105306.3	3945	15	26519	3	-4595	0	3prime_fragment	FALSE	canonical	3	37	junction_10	5.1713688280334	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTGCATCCTCTTTAT	NA	False	NA	10	True	ATTAAA	-15	NA	85460783	85496153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_85460933_85463060_85463151_85465075_85465178_85466951_85467046_85467156_85467293_85467952_85468174_85469547_85469727_85476366_85476473_85481351_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
ENSMUSG00000020042.16_17	chr10	+	2467	5	FSM	ENSMUSG00000020042.16	ENSMUST00000156123.2	2806	5	336	3	336	0	multi-exon	FALSE	canonical	3	37	junction_2	3.96074487943871	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTGCATCCTCTTTAT	NA	False	NA	10	True	ATTAAA	-15	NA	85481402	85496153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
ENSMUSG00000020042.16_18	chr10	+	1679	1	ISM	ENSMUSG00000020042.16	ENSMUST00000105307.8	5788	17	271797	3	4453	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTGCATCCTCTTTAT	NA	False	NA	10	True	ATTAAA	-15	NA	85494474	85496153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_85494500_85496200
ENSMUSG00000020042.16_5	chr10	+	3825	15	ISM	ENSMUSG00000020042.16	ENSMUST00000105307.8	5788	17	174836	3	-36751	0	3prime_fragment	FALSE	canonical	3	31	junction_1	6.30192714288937	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTGCATCCTCTTTAT	NA	False	NA	10	True	ATTAAA	-15	NA	85397513	85496153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_85397574_85434588_85434742_85460766_85460933_85463060_85463151_85465075_85465178_85466951_85467046_85467156_85467293_85467952_85468174_85469547_85469727_85476366_85476473_85481351_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
ENSMUSG00000020044.14_0	chr10	+	4566	5	FSM	ENSMUSG00000020044.14	ENSMUST00000020234.14	4722	5	152	4	-30	-4	multi-exon	FALSE	canonical	2	3	junction_1	4.15331193145904	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATACCTGCTGTCTCTTG	NA	False	NA	15	True	AGTAAA	-17	NA	86136387	86185366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_86136839_86174236_86174320_86179796_86179909_86180417_86180540_86181568
ENSMUSG00000020044.14_2	chr10	+	2024	4	ISM	ENSMUSG00000020044.14	ENSMUST00000020234.14	4722	5	38009	2087	35527	-2087	3prime_fragment	FALSE	canonical	3	9	junction_3	2.05480466765633	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAATAAGATTATTTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	86174244	86183283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_86174320_86179796_86179909_86180417_86180540_86181568
ENSMUSG00000020044.14_3	chr10	+	3273	1	ISM	ENSMUSG00000020044.14	ENSMUST00000020234.14	4722	5	45859	3	43377	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATACCTGCTGTCTCTTGC	NA	False	NA	16	True	AGTAAA	-18	NA	86182094	86185367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_86182100_86185400
ENSMUSG00000020048.14_1	chr10	-	2764	18	FSM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	49	12	49	-12	multi-exon	FALSE	canonical	3	2860	junction_11	342.987041630793	5189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATCCCAAATACTCAGTGC	NA	False	NA	-52	True	AATAAA	-4	NA	86541324	86526715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ENSMUSG00000020056.17_0	chr10	+	827	7	FSM	ENSMUSG00000020056.17	ENSMUST00000020248.16	1052	7	74	151	-4	0	multi-exon	FALSE	canonical	3	318	junction_4	34.2377309736236	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGGTTTGTTGACCAAA	NA	False	NA	14	True	AATAAA	-17	NA	88037028	88081869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88070255_88070321_88081617
ENSMUSG00000020056.17_1	chr10	+	825	7	FSM	ENSMUSG00000020056.17	ENSMUST00000182183.8	838	7	14	-1	-5	0	multi-exon	FALSE	canonical	3	113	junction_4	103.215658803411	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGGTTTGTTGACCAAA	NA	False	NA	14	True	AATAAA	-17	NA	88037027	88081869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88070255_88070321_88081617
ENSMUSG00000020057.3_0	chr10	-	2782	7	FSM	ENSMUSG00000020057.3	ENSMUST00000020249.2	2807	7	23	2	23	-2	multi-exon	FALSE	canonical	0	0	junction_2	1.21335164821342	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATTTGTCTCGGTTGCA	NA	False	NA	NA	False	AATAAA	-16	NA	88192914	88158667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_88160648_88161195_88161289_88164944_88165004_88172672_88172851_88176381_88176525_88180505_88180574_88192653
ENSMUSG00000020059.10_0	chr10	+	1042	9	FSM	ENSMUSG00000020059.10	ENSMUST00000020252.10	1139	9	97	0	2	0	multi-exon	FALSE	canonical	3	104	junction_4	7.47391296443837	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTGGTTTCAGTATAT	NA	False	NA	3	True	AATAAA	-15	NA	88295527	88309097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537_88308643_88308766
ENSMUSG00000020059.10_1	chr10	+	1160	8	FSM	ENSMUSG00000020059.10	ENSMUST00000125612.2	1169	8	2	7	2	-6	multi-exon	FALSE	canonical	3	104	junction_4	7.98212288268514	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTATGTTTTGGTTTCA	NA	False	NA	-3	True	AATAAA	-9	NA	88295527	88309091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537
ENSMUSG00000020059.10_2	chr10	+	924	8	FSM	ENSMUSG00000020059.10	ENSMUST00000123244.8	927	8	2	1	2	0	multi-exon	FALSE	canonical	3	14	junction_4	38.7767024521326	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTGGTTTCAGTATAT	NA	False	NA	3	True	AATAAA	-15	NA	88295527	88309097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537_88308643_88308766
ENSMUSG00000020059.10_3	chr10	+	1036	7	ISM	ENSMUSG00000020059.10	ENSMUST00000123244.8	927	8	0	15	0	-14	intron_retention	FALSE	canonical	3	14	junction_4	41.5869236926972	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGATTTAAATTTATGTTT	NA	False	NA	-11	True	AATAAA	-1	NA	88295525	88309083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537
ENSMUSG00000020063.17_1	chr10	-	3894	9	FSM	ENSMUSG00000020063.17	ENSMUST00000020257.13	3905	9	2	9	2	-9	multi-exon	FALSE	canonical	3	191	junction_8	29.4870204496826	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCGTTAACTTCCATTG	NA	False	NA	-9	True	ATTAAA	-17	NA	63174809	63154794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523_63167677_63171414_63171657_63172758_63172876_63174343
ENSMUSG00000020063.17_34	chr10	-	200	1	ISM	ENSMUSG00000020063.17	ENSMUST00000148516.2	842	3	205	3075	205	-3075	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGGTTGTTTTAGGTTC	NA	False	NA	NA	False	NA	NA	NA	63161200	63161000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_63161000_63161200
ENSMUSG00000020063.17_7	chr10	-	1701	1	ISM	ENSMUSG00000020063.17	ENSMUST00000120239.8	4430	14	60978	21	4900	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGACTTTTTTCCCGTTA	NA	False	NA	-19	True	ATTAAA	-7	NA	63156505	63154804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_63154800_63156500
ENSMUSG00000020063.17_8	chr10	-	3778	8	FSM	ENSMUSG00000020063.17	ENSMUST00000105442.3	3740	8	5	-43	2	-8	multi-exon	FALSE	canonical	3	29	junction_7	79.0360289839452	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCGTTAACTTCCATTGT	NA	False	NA	-8	True	ATTAAA	-18	NA	63174809	63154793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523_63167677_63171414_63171657_63174343
ENSMUSG00000020064.10_0	chr10	+	3905	26	FSM	ENSMUSG00000020064.10	ENSMUST00000219577.2	3914	26	1	8	1	-4	multi-exon	FALSE	canonical	3	20	junction_16	90.360929610092	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAGATACCAGTAGTTTC	NA	False	NA	9	True	AATAAA	-23	NA	63079702	63153649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63139623_63139648_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
ENSMUSG00000020064.10_1	chr10	+	3882	25	FSM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	12	4	0	-4	multi-exon	FALSE	canonical	3	265	junction_7	41.1321548993809	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAGATACCAGTAGTTTC	NA	False	NA	9	True	AATAAA	-23	NA	63079701	63153649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
ENSMUSG00000020067.9_0	chr10	-	2289	4	FSM	ENSMUSG00000020067.9	ENSMUST00000218978.2	1833	4	24	-480	24	-2	multi-exon	FALSE	canonical	3	18	junction_3	3.29983164553722	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAAAAATCA	NA	False	NA	NA	False	AATAAA	-10	NA	62958439	62951575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62952806_62954199_62954334_62955807_62955974_62957680
ENSMUSG00000020067.9_2	chr10	-	4829	19	ISM	ENSMUSG00000020067.9	ENSMUST00000095580.3	5246	20	10847	4	10847	-4	3prime_fragment	TRUE	canonical	1	2	junction_11	6.62114085130648	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTCAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	AATAAA	-8	NA	63028884	62951577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_62952806_62954199_62954334_62955807_62955974_62957680_62957889_62959049_62959177_62961447_62961528_62963406_62963557_62966761_62966984_62970711_62970851_62971486_62972075_62981614_62981988_62983655_62983773_62985801_62985826_62988573_62988716_62998000_62998073_62999291_62999404_63003011_63003064_63005033_63005210_63028165
ENSMUSG00000020067.9_5	chr10	-	5240	20	FSM	ENSMUSG00000020067.9	ENSMUST00000095580.3	5246	20	2	4	2	-4	multi-exon	FALSE	canonical	1	2	junction_11	6.54919588644307	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTCAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	AATAAA	-8	NA	63039729	62951577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62952806_62954199_62954334_62955807_62955974_62957680_62957889_62959049_62959177_62961447_62961528_62963406_62963557_62966761_62966984_62970711_62970851_62971486_62972075_62981614_62981988_62983655_62983773_62985801_62985826_62988573_62988716_62998000_62998073_62999291_62999404_63003011_63003064_63005033_63005210_63028165_63029063_63039496
ENSMUSG00000020069.17_0	chr10	-	1300	9	FSM	ENSMUSG00000020069.17	ENSMUST00000140743.8	1633	9	330	3	7	0	multi-exon	FALSE	canonical	3	177	junction_7	118.49762655851	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCACTGATGTTGCTACT	5788	False	NA	-9	True	AATAAA	-12	NA	62859666	62851209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62855171_62855307_62859498
ENSMUSG00000020069.17_7	chr10	-	1394	10	FSM	ENSMUSG00000020069.17	ENSMUST00000118898.8	2168	10	7	767	7	0	multi-exon	FALSE	canonical	3	179	junction_6	104.074166337115	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCACTGATGTTGCTACT	5788	False	NA	-9	True	AATAAA	-12	NA	62859666	62851209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62859498
ENSMUSG00000020069.17_8	chr10	-	1439	10	FSM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	7	767	7	0	multi-exon	FALSE	canonical	3	275	junction_6	80.8621750760186	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCACTGATGTTGCTACT	5788	False	NA	-9	True	AATAAA	-12	NA	62859666	62851209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859498
ENSMUSG00000020070.19_24	chr10	+	3284	3	ISM	ENSMUSG00000020070.19	ENSMUST00000119567.8	4130	18	28315	8	6300	-8	3prime_fragment	FALSE	canonical	3	75	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCGAAGATCTAAGAAAT	NA	False	NA	NA	False	AATAAA	-13	NA	62844335	62849726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_62845184_62847196_62847275_62847368
ENSMUSG00000020070.19_26	chr10	+	1379	1	ISM	ENSMUSG00000020070.19	ENSMUST00000119567.8	4130	18	32333	2	10318	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGATCTAAGAAATTAACAC	NA	False	NA	NA	False	AATAAA	-19	NA	62848353	62849732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_62848400_62849700
ENSMUSG00000020070.19_3	chr10	+	4110	18	FSM	ENSMUSG00000020070.19	ENSMUST00000119567.8	4130	18	12	8	2	-8	multi-exon	FALSE	canonical	3	50	junction_14	9.76718607764962	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCGAAGATCTAAGAAAT	NA	False	NA	NA	False	AATAAA	-13	NA	62816032	62849726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_62816112_62818449_62818624_62824901_62825020_62826758_62826861_62828895_62829020_62829758_62829821_62830483_62830550_62831088_62831159_62833659_62833762_62833857_62833975_62836011_62836180_62837961_62838060_62840435_62840556_62842403_62842534_62843452_62843548_62845134_62845184_62847196_62847275_62847368
ENSMUSG00000020072.16_1	chr10	+	1396	3	FSM	ENSMUSG00000020072.16	ENSMUST00000130531.2	847	3	130	-679	130	-6	multi-exon	FALSE	canonical	2	8	junction_1	1.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCAGCTTTGAATTTGGT	4459	False	NA	NA	False	AATAAA	-10	NA	62890118	62894586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_62890285_62892557_62892621_62893419
ENSMUSG00000020074.8_2	chr10	-	3844	25	FSM	ENSMUSG00000020074.8	ENSMUST00000020268.7	4352	25	-31	539	-6	-5	multi-exon	TRUE	canonical	0	0	junction_11	99.9008883844383	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTACTAATGTCTTTTATT	NA	False	NA	-4	True	AATAAA	-30	NA	62628041	62580245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627983
ENSMUSG00000020074.8_29	chr10	-	3620	24	NIC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	6	-9	combination_of_known_splicesites	FALSE	canonical	3	44	junction_11	80.1914297567216	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAATTACTAATGTCTTT	NA	False	NA	-8	True	AATAAA	-26	NA	62628043	62580249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
ENSMUSG00000020074.8_33	chr10	-	3836	25	NIC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	6	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	103.452879437398	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTAATTACTAATGTCTT	NA	False	NA	-9	True	AATAAA	-25	NA	62628043	62580250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627988
ENSMUSG00000020074.8_4	chr10	-	3832	25	FSM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	21	9	5	-9	multi-exon	FALSE	canonical	0	0	junction_11	85.6392222576133	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAATTACTAATGTCTTT	NA	False	NA	-8	True	AATAAA	-26	NA	62628044	62580249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
ENSMUSG00000020074.8_5	chr10	-	2996	11	ISM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	27670	12	420	-12	intron_retention	FALSE	canonical	3	330	junction_9	40.1223129941433	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAAGTAATTACTAATGTC	1920	False	NA	-11	True	AATAAA	-23	NA	62600395	62580252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218
ENSMUSG00000020074.8_8	chr10	-	3911	25	NIC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	100.456449588311	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTAATGTCTTTTAT	NA	False	NA	-5	True	AATAAA	-29	NA	62628034	62580246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627908
ENSMUSG00000020075.9_1	chr10	-	1991	1	ISM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	20037	3	7933	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTAGTTCTTGGTGGCT	4414	False	NA	-8	True	AATAAA	-15	NA	62418023	62416032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_62416000_62418000
ENSMUSG00000020075.9_2	chr10	-	4710	15	FSM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	9	3	9	-3	multi-exon	FALSE	canonical	3	474	junction_14	69.0087246776279	1355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTAGTTCTTGGTGGCT	NA	False	NA	-8	True	AATAAA	-15	NA	62438051	62416032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
ENSMUSG00000020075.9_7	chr10	-	4262	14	ISM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	3693	3	3693	-3	3prime_fragment	FALSE	canonical	3	576	junction_9	52.0987910000668	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTAGTTCTTGGTGGCT	NA	False	NA	-8	True	AATAAA	-15	NA	62434367	62416032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010
ENSMUSG00000020076.8_0	chr10	-	2625	16	NIC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	-5	-10	combination_of_known_junctions	FALSE	canonical	3	67	junction_15	70.2071854505569	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTTTTATTCTGTGTTA	8116	False	NA	-21	True	ATTAAA	-18	NA	62486987	62451803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
ENSMUSG00000020076.8_1	chr10	-	2519	15	FSM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	5	11	5	-11	multi-exon	FALSE	canonical	3	212	junction_9	23.4748019486984	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTTTATTCTGTGTT	8111	False	NA	-22	True	ATTAAA	-17	NA	62486992	62451804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
ENSMUSG00000020076.8_21	chr10	-	2946	11	ISM	ENSMUSG00000020076.8	ENSMUST00000218372.2	2375	16	7728	-196	-861	-15	3prime_fragment	FALSE	canonical	3	212	junction_9	24.5578907889094	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTCTGTTTTTATTCTG	8974	False	NA	-26	True	ATTAAA	-13	NA	62477804	62451808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523
ENSMUSG00000020076.8_27	chr10	-	2349	14	NIC	ENSMUSG00000020076.8	novel	2535	15	NA	NA	-5	-14	combination_of_known_splicesites	FALSE	canonical	2	8	junction_6	72.4032102331865	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTCTGTTTTTATTCTGT	8116	False	NA	-25	True	ATTAAA	-14	NA	62486987	62451807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
ENSMUSG00000020077.15_0	chr10	-	1319	4	NNC	ENSMUSG00000020077.15	novel	1727	4	NA	NA	-6241	-1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	4.10960933531265	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCGTGGCTATGTGACATG	NA	False	NA	-3	True	AATAAA	-20	NA	62350117	62330207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_62330886_62333557_62333703_62343420_62343616_62349816
ENSMUSG00000020077.15_1	chr10	-	1140	4	FSM	ENSMUSG00000020077.15	ENSMUST00000160987.8	1727	4	-10	597	-10	-2	multi-exon	FALSE	canonical	2	4	junction_3	6.34209919681348	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCGTGGCTATGTGACAT	NA	False	NA	-4	True	AATAAA	-19	NA	62363240	62330208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62330886_62333557_62333703_62343420_62343616_62363117
ENSMUSG00000020078.17_0	chr10	-	2536	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	57	4	-2	-4	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	1453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAAACTTAAGTTTGT	5255	False	NA	-15	True	AATAAA	-8	NA	62322527	62291059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
ENSMUSG00000020078.17_1	chr10	-	2458	8	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	111	junction_6	333.910900983958	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAAACTTAAGTTTGT	5257	False	NA	-15	True	AATAAA	-8	NA	62322525	62291059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62316336_62316487_62322436
ENSMUSG00000020079.16_0	chr10	-	2414	15	FSM	ENSMUSG00000020079.16	ENSMUST00000020273.16	2604	15	20	170	20	-39	multi-exon	FALSE	canonical	2	205	junction_12	41.8359283147773	511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACACGGCATTCTCTGC	NA	False	NA	-23	True	AATAAA	-19	NA	62285497	62265157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62265614_62266249_62266399_62268067_62268245_62268830_62268912_62270173_62270394_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279173_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
ENSMUSG00000020080.9_0	chr10	-	3428	18	FSM	ENSMUSG00000020080.9	ENSMUST00000020277.9	3517	18	87	2	4	-2	multi-exon	TRUE	canonical	1	1	junction_6	3.69231878270005	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGAGGTATTAAGCTT	NA	False	NA	NA	False	AATAAA	-20	NA	62258183	62218917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62219702_62221456_62221691_62227089_62227246_62229465_62229650_62230933_62231034_62231176_62231273_62234363_62234484_62234568_62234709_62235970_62236276_62237502_62237737_62239270_62239427_62241203_62241388_62244393_62244494_62245568_62245665_62247285_62247406_62247484_62247634_62253553_62253717_62258076
ENSMUSG00000020080.9_2	chr10	-	973	2	ISM	ENSMUSG00000020080.9	ENSMUST00000020277.9	3517	18	36625	2	14495	-2	3prime_fragment	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGAGGTATTAAGCTT	9605	False	NA	NA	False	AATAAA	-20	NA	62221645	62218917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_62219702_62221456
ENSMUSG00000020081.6_0	chr10	+	2716	5	FSM	ENSMUSG00000020081.6	ENSMUST00000020278.6	2258	5	314	-772	314	772	multi-exon	FALSE	canonical	1	1	junction_2	1.29903810567666	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGAGCTGCAGTAGTGA	NA	False	NA	NA	False	AATAAA	-14	NA	62088530	62102541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_62088989_62093936_62094132_62096950_62097105_62097262_62097460_62100829
ENSMUSG00000020083.14_0	chr10	-	1170	4	FSM	ENSMUSG00000020083.14	ENSMUST00000125704.8	1769	4	42	557	5	0	multi-exon	FALSE	canonical	3	105	junction_3	8.33999733546454	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCCGGTGAATGACTG	NA	False	NA	-12	True	AATAAA	-19	NA	61946787	61943990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946737
ENSMUSG00000020083.14_1	chr10	-	1094	3	FSM	ENSMUSG00000020083.14	ENSMUST00000142796.8	1135	3	39	2	2	0	multi-exon	FALSE	canonical	3	38	junction_2	41.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCCGGTGAATGACTG	NA	False	NA	-12	True	AATAAA	-19	NA	61946790	61943990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_61944903_61945662_61945792_61946737
ENSMUSG00000020083.14_11	chr10	-	1517	4	FSM	ENSMUSG00000020083.14	ENSMUST00000124615.8	1493	4	-26	2	19	0	multi-exon	FALSE	canonical	2	6	junction_3	54.9322815433289	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCCGGTGAATGACTG	NA	False	NA	-12	True	AATAAA	-19	NA	61946773	61943990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946376
ENSMUSG00000020083.14_3	chr10	-	2785	1	NIC	ENSMUSG00000020083.14	novel	1769	4	NA	NA	17	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCCGGTGAATGACTG	NA	False	NA	-12	True	AATAAA	-19	NA	61946775	61943990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_61944000_61946800
ENSMUSG00000020083.14_4	chr10	-	1764	3	FSM	ENSMUSG00000020083.14	ENSMUST00000141144.2	594	3	-462	-708	10	0	multi-exon	FALSE	canonical	3	121	junction_1	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCCGGTGAATGACTG	NA	False	NA	-12	True	AATAAA	-19	NA	61946737	61943990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_61944903_61945662_61945792_61946014
ENSMUSG00000020083.14_5	chr10	-	2015	2	ISM	ENSMUSG00000020083.14	ENSMUST00000124615.8	1493	4	-20	4	-20	-2	intron_retention	FALSE	canonical	3	121	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAAGCCGGTGAATGAC	NA	False	NA	-14	True	AATAAA	-17	NA	61946767	61943992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_61944903_61945662
ENSMUSG00000020083.14_6	chr10	-	2574	2	NIC	ENSMUSG00000020083.14	novel	594	3	NA	NA	5	0	intron_retention	FALSE	canonical	3	124	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCCGGTGAATGACTG	NA	False	NA	-12	True	AATAAA	-19	NA	61946787	61943990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_61945792_61946014
ENSMUSG00000020085.16_0	chr10	+	3088	9	FSM	ENSMUSG00000020085.16	ENSMUST00000099706.9	3086	9	-4	2	-4	-2	multi-exon	FALSE	canonical	3	116	junction_1	25.5706741209535	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAAGACGCTGGAGCT	NA	False	NA	0	True	AATAAA	-11	NA	61551097	61574424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361
ENSMUSG00000020085.16_1	chr10	+	652	5	ISM	ENSMUSG00000020085.16	ENSMUST00000099706.9	3086	9	-6	10338	6	388	5prime_fragment	FALSE	canonical	3	116	junction_1	28.6050694807756	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATGTTTGTTTGATTGT	NA	False	NA	NA	False	AAAAAG	-12	NA	61551095	61564088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907
ENSMUSG00000020085.16_22	chr10	+	2297	2	ISM	ENSMUSG00000020085.16	ENSMUST00000099706.9	3086	9	20107	-3	7282	-3	3prime_fragment	FALSE	canonical	3	130	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACGCTGGAGCTTTTAT	NA	False	NA	5	True	AATAAA	-16	NA	61571208	61574429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_61571438_61572361
ENSMUSG00000020085.16_23	chr10	+	1770	1	NIC	ENSMUSG00000020085.16	novel	1512	10	NA	NA	8730	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACGCTGGAGCTTT	NA	False	NA	2	True	AATAAA	-13	NA	61572656	61574426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_61572700_61574400
ENSMUSG00000020085.16_3	chr10	+	1448	10	FSM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	58	6	-2	0	multi-exon	FALSE	canonical	3	49	junction_9	38.6497408676411	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACGCTGGAGCTTT	NA	False	NA	2	True	AATAAA	-13	NA	61551099	61574426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574177
ENSMUSG00000020085.16_4	chr10	+	1432	10	FSM	ENSMUSG00000020085.16	ENSMUST00000067857.11	1442	10	8	2	-4	-2	multi-exon	FALSE	canonical	3	36	junction_9	41.9205597927	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCCGATCCTCCTCCTT	NA	False	NA	NA	False	AATAAA	-19	NA	61551097	61575037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574806
ENSMUSG00000020085.16_5	chr10	+	4118	8	NIC	ENSMUSG00000020085.16	novel	3086	9	NA	NA	-4	0	intron_retention	FALSE	canonical	3	116	junction_1	25.8330590286073	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACGCTGGAGCTTT	NA	False	NA	2	True	AATAAA	-13	NA	61551097	61574426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61571438_61572361
ENSMUSG00000020086.7_0	chr10	-	1953	9	FSM	ENSMUSG00000020086.7	ENSMUST00000020283.5	2175	9	210	12	210	-12	multi-exon	FALSE	canonical	3	267	junction_7	26.0813031691286	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAAAAGCTCCAGC	NA	False	NA	-38	True	NA	NA	NA	61619716	61574455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_61575242_61576913_61577089_61582411_61582502_61583450_61583551_61585054_61585166_61587455_61587654_61589240_61589348_61593502_61593734_61619561
ENSMUSG00000020087.6_0	chr10	+	2231	4	FSM	ENSMUSG00000020087.6	ENSMUST00000020284.5	2286	4	48	7	48	-7	multi-exon	FALSE	canonical	3	269	junction_1	6.12825877028341	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTCTGTCTGTTGGC	NA	False	NA	14	True	AATAAA	-17	NA	61531340	61538545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_61532522_61534076_61534208_61535221_61535408_61537812
ENSMUSG00000020087.6_1	chr10	+	3786	3	NIC	ENSMUSG00000020087.6	novel	2286	4	NA	NA	48	-7	intron_retention	FALSE	canonical	3	276	junction_2	4	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTCTGTCTGTTGGC	NA	False	NA	14	True	AATAAA	-17	NA	61531340	61538545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_61534208_61535221_61535408_61537812
ENSMUSG00000020088.11_0	chr10	+	2580	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	25	8	5	-8	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	1302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGAACTTGCCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	61516113	61529068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
ENSMUSG00000020088.11_1	chr10	+	2718	8	NIC	ENSMUSG00000020088.11	novel	897	8	NA	NA	-6	-8	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	576.708322981313	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGAACTTGCCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	61516102	61529068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_61516193_61519839_61519967_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
ENSMUSG00000020089.9_1	chr10	+	1303	11	FSM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	56	5	-13	-5	multi-exon	FALSE	canonical	3	3777	junction_3	128.102654148929	2752	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACTTGGCTTAGGATAG	2108	False	NA	10	True	AATAAA	-11	NA	61484386	61509942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
ENSMUSG00000020090.8_2	chr10	+	3116	1	NIC	ENSMUSG00000020090.8	novel	3479	4	NA	NA	29957	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAATGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	61461227	61464343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_61461200_61464300
ENSMUSG00000020091.16_0	chr10	-	2614	3	FSM	ENSMUSG00000020091.16	ENSMUST00000020288.15	5784	3	-130	3300	-130	1029	multi-exon	FALSE	canonical	3	200	junction_2	2.5	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAGTCTTGGGAAAACGT	NA	False	NA	-20	True	ATTAAA	-19	NA	61288570	61267569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_61269608_61270696_61270883_61288180
ENSMUSG00000020091.16_1	chr10	-	2747	1	ISM	ENSMUSG00000020091.16	ENSMUST00000020288.15	5784	3	21421	3	21418	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGGTGGTGGTTTGTG	6412	False	NA	-4	True	AATAAA	-13	NA	61267019	61264272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_61264300_61267000
ENSMUSG00000020091.16_9	chr10	-	1348	1	ISM	ENSMUSG00000020091.16	ENSMUST00000020288.15	5784	3	19522	3301	19519	1028	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGAGTCTTGGGAAAACG	4513	False	NA	-21	True	ATTAAA	-18	NA	61268918	61267570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_61267600_61268900
ENSMUSG00000020092.10_1	chr10	-	4107	20	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	171	-7	at_least_one_novel_splicesite	FALSE	canonical	3	78	junction_14	71.6844810258441	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATACTGCTTTGCTGAT	NA	False	NA	-8	True	ATTAAA	-15	NA	61219138	61155441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184166_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
ENSMUSG00000020092.10_4	chr10	-	4105	20	FSM	ENSMUSG00000020092.10	ENSMUST00000020289.10	4282	20	167	10	167	-10	multi-exon	FALSE	canonical	3	320	junction_14	26.6759563689748	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAACATACTGCTTTGCT	NA	False	NA	-11	True	ATTAAA	-12	NA	61219142	61155444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
ENSMUSG00000020097.15_0	chr10	-	4081	15	FSM	ENSMUSG00000020097.15	ENSMUST00000122259.8	4102	15	18	3	18	0	multi-exon	FALSE	canonical	3	186	junction_14	78.4471744785844	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCATTGGATGGTTGATT	NA	False	NA	-5	True	AATAAA	-13	NA	60983405	60934423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983301
ENSMUSG00000020097.15_2	chr10	-	1784	1	ISM	ENSMUSG00000020097.15	ENSMUST00000122259.8	4102	15	47217	2	2698	1	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATTGGATGGTTGATTT	1926	False	NA	-4	True	AATAAA	-14	NA	60936206	60934422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_60934400_60936200
ENSMUSG00000020097.15_28	chr10	-	4034	15	NIC	ENSMUSG00000020097.15	novel	4070	15	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_14	117.157773440566	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCATTGGATGGTTGATT	NA	False	NA	-5	True	AATAAA	-13	NA	60983451	60934423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983394
ENSMUSG00000020097.15_5	chr10	-	4043	15	FSM	ENSMUSG00000020097.15	ENSMUST00000092498.12	4070	15	24	3	2	0	multi-exon	FALSE	canonical	3	155	junction_14	85.0811437417726	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCATTGGATGGTTGATT	NA	False	NA	-5	True	AATAAA	-13	NA	60983429	60934423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983363
ENSMUSG00000020098.8_0	chr10	+	801	4	FSM	ENSMUSG00000020098.8	ENSMUST00000020298.8	789	4	-16	4	12	-4	multi-exon	FALSE	canonical	3	60	junction_3	1.24721912892465	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGCTCAGCTTCTAGAAC	NA	False	NA	2	True	AATAAA	-13	NA	60925121	60930099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_60925196_60927842_60927975_60928382_60928464_60929585
ENSMUSG00000020099.9_0	chr10	-	1897	1	ISM	ENSMUSG00000020099.9	ENSMUST00000077925.7	5869	17	67075	17	56135	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATCCAGGTC	NA	False	NA	NA	False	AATAAA	-21	NA	60600285	60598388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_60598400_60600300
ENSMUSG00000020100.16_0	chr10	-	5258	6	FSM	ENSMUSG00000020100.16	ENSMUST00000117513.8	5240	6	-25	7	-13	-7	multi-exon	FALSE	canonical	3	34	junction_2	5.08330601085553	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGAGCTTGGTTGGTGT	NA	False	NA	-12	True	AATAAA	-14	NA	60588586	60547857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_60552270_60556639_60556803_60559542_60559770_60566348_60566432_60586164_60586464_60588512
ENSMUSG00000020100.16_1	chr10	-	3600	1	ISM	ENSMUSG00000020100.16	ENSMUST00000117513.8	5240	6	37110	1	8644	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGGTTGGTGTCTCCAT	NA	False	NA	-6	True	AATAAA	-20	NA	60551451	60547851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_60547900_60551500
ENSMUSG00000020100.16_2	chr10	-	4713	3	ISM	ENSMUSG00000020100.16	ENSMUST00000117513.8	5240	6	28887	1	421	-1	3prime_fragment	FALSE	canonical	3	34	junction_2	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGGTTGGTGTCTCCAT	NA	False	NA	-6	True	AATAAA	-20	NA	60559674	60547851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_60552270_60556639_60556803_60559542
ENSMUSG00000020100.16_3	chr10	-	4830	4	NIC	ENSMUSG00000020100.16	novel	3123	5	NA	NA	19	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	20.2374789822141	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGGTTGGTGTCTCCAT	NA	False	NA	-6	True	AATAAA	-20	NA	60588542	60547851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_60552270_60566348_60566432_60586164_60586464_60588512
ENSMUSG00000020100.16_6	chr10	-	5067	5	ISM	ENSMUSG00000020100.16	ENSMUST00000117513.8	5240	6	2220	2	2220	-2	3prime_fragment	FALSE	canonical	3	34	junction_2	4.81534007106456	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTGGTTGGTGTCTCCA	NA	False	NA	-7	True	AATAAA	-19	NA	60586341	60547852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_60552270_60556639_60556803_60559542_60559770_60566348_60566432_60586164
ENSMUSG00000020105.10_2	chr10	+	3920	19	FSM	ENSMUSG00000020105.10	ENSMUST00000074807.8	4016	19	-33	129	1	0	multi-exon	FALSE	canonical	3	53	junction_3	15.6639083466215	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAGTACTGAAGTTTTTT	NA	False	NA	14	True	TATAAA	-16	NA	125802088	125851099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_125802581_125807989_125808062_125808261_125808337_125830286_125830419_125831302_125831447_125832483_125832628_125832930_125833075_125833472_125833617_125834818_125834900_125835957_125836030_125838269_125838342_125838810_125838975_125842556_125842878_125844338_125844621_125845655_125846109_125846769_125846929_125848878_125849023_125849120_125849391_125850544
ENSMUSG00000020107.11_0	chr10	-	1350	5	FSM	ENSMUSG00000020107.11	ENSMUST00000020307.11	1379	5	19	10	-6	-10	multi-exon	FALSE	canonical	3	55	junction_3	152.559004978402	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGGTCCAGATCGCTGTG	NA	False	NA	-14	True	AATAAA	-8	NA	59838914	59823739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239_59838290_59838777
ENSMUSG00000020107.11_1	chr10	-	1308	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	33	511	9	-12	multi-exon	FALSE	canonical	3	296	junction_3	30.5650490302604	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGGTCCAGATCGCTG	NA	False	NA	-16	True	AATAAA	-6	NA	59838924	59823741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838777
ENSMUSG00000020107.11_2	chr10	-	674	1	ISM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	14553	500	1801	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCGCTGTGCGTATCCTT	NA	False	NA	-5	True	AATAAA	-17	NA	59824404	59823730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_59823700_59824400
ENSMUSG00000020107.11_4	chr10	-	1150	3	FSM	ENSMUSG00000020107.11	ENSMUST00000182912.2	566	3	-16	-568	9	-3	multi-exon	FALSE	canonical	3	24	junction_2	171	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGATCGCTGTGCGTATCC	NA	False	NA	-7	True	AATAAA	-15	NA	59838924	59823732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_59824661_59826654_59826730_59838777
ENSMUSG00000020108.5_0	chr10	-	1748	3	FSM	ENSMUSG00000020108.5	ENSMUST00000020308.5	1755	3	1	6	1	-6	multi-exon	FALSE	canonical	3	721	junction_1	4.5	841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACTTGAGTCTCATCG	NA	False	NA	-10	True	AATAAA	-11	NA	59787655	59785496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_59786852_59787138_59787395_59787518
ENSMUSG00000020108.5_1	chr10	-	1129	1	ISM	ENSMUSG00000020108.5	ENSMUST00000020308.5	1755	3	1031	6	1031	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACTTGAGTCTCATCG	NA	False	NA	-10	True	AATAAA	-11	NA	59786625	59785496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_59785500_59786600
ENSMUSG00000020109.14_0	chr10	+	3006	9	FSM	ENSMUSG00000020109.14	ENSMUST00000020309.7	2238	9	-22	-746	-14	-29	multi-exon	FALSE	canonical	3	36	junction_8	81.8458917722814	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGTATAAATATATGTTT	NA	False	NA	2	True	NA	NA	NA	59715425	59735089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732318_59733312
ENSMUSG00000020109.14_1	chr10	+	1914	9	FSM	ENSMUSG00000020109.14	ENSMUST00000147914.8	3041	9	49	1078	-13	210	multi-exon	FALSE	canonical	3	150	junction_8	46.5154544210846	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGGTCTCCAGGCTTATG	NA	False	NA	5	True	TATAAA	-16	NA	59715426	59734046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732270_59733312
ENSMUSG00000020109.14_2	chr10	+	1969	9	FSM	ENSMUSG00000020109.14	ENSMUST00000146590.8	3070	9	29	1072	-14	210	multi-exon	FALSE	canonical	3	91	junction_8	64.4659551623956	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGGTCTCCAGGCTTATG	NA	False	NA	5	True	TATAAA	-16	NA	59715425	59734046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732324_59733312
ENSMUSG00000020109.14_7	chr10	+	1511	8	FSM	ENSMUSG00000020109.14	ENSMUST00000142819.8	1495	8	-14	-2	-14	2	multi-exon	FALSE	canonical	3	241	junction_6	22.8937207325413	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCCTGGCTTTTGTTGC	NA	False	NA	NA	False	NA	NA	NA	59715425	59732599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171
ENSMUSG00000020111.16_0	chr10	+	2302	12	FSM	ENSMUSG00000020111.16	ENSMUST00000165563.8	2442	12	128	12	6	-3	multi-exon	FALSE	canonical	2	105	junction_7	32.1836157690049	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACCCGCAAGAGCTCTG	NA	False	NA	15	True	NA	NA	NA	59538426	59699942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325_59586370_59603959_59604075_59623762_59623846_59624700_59624899_59663010_59663149_59675496_59675606_59697384_59697475_59699000
ENSMUSG00000020111.16_2	chr10	+	2279	3	ISM	ENSMUSG00000020111.16	ENSMUST00000167872.8	4699	4	23	9899	-13	-5761	5prime_fragment	FALSE	canonical	3	180	junction_2	29.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATTCTTCTGTCTATAA	NA	False	NA	NA	False	CATAAA	-7	NA	59538407	59570819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_59538510_59563778_59563941_59568804
ENSMUSG00000020114.13_2	chr10	-	4383	15	FSM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	-8	3391	-8	-3391	multi-exon	FALSE	canonical	3	515	junction_9	90.891306470073	1451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACCATGGATTTCTTGGT	218	False	NA	-30	True	ATTAAA	-14	NA	119075968	119038550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_119039111_119042620_119042729_119043931_119044097_119044177_119044348_119045878_119045975_119046559_119048054_119048344_119048487_119049451_119049745_119051106_119051253_119052047_119052154_119052355_119052613_119053845_119053970_119055494_119055650_119063307_119063452_119075545
ENSMUSG00000020114.13_5	chr10	-	2085	6	ISM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	28415	3391	969	-3391	3prime_fragment	FALSE	canonical	3	710	junction_5	40.7578213352971	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACCATGGATTTCTTGGT	NA	False	NA	-30	True	ATTAAA	-14	NA	119047545	119038550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_119039111_119042620_119042729_119043931_119044097_119044177_119044348_119045878_119045975_119046559
ENSMUSG00000020115.4_1	chr10	-	2982	21	FSM	ENSMUSG00000020115.4	ENSMUST00000020316.4	3024	21	33	9	-13	-4	multi-exon	FALSE	canonical	3	107	junction_12	17.7	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTAAAAGGCTTGTGTGC	3911	False	NA	-9	True	AATAAA	-13	NA	121422659	121382368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747_121407930_121412178_121412309_121414484_121414626_121420100_121420247_121422599
ENSMUSG00000020115.4_2	chr10	-	4945	20	NIC	ENSMUSG00000020115.4	novel	3024	21	NA	NA	-9	1	intron_retention	FALSE	canonical	3	107	junction_11	18.1066400945196	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGGCTTGTGTGCTTTTG	3915	False	NA	-4	True	AATAAA	-18	NA	121422655	121382363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747_121407930_121412178_121412309_121414484_121414626_121420100_121420247_121422599
ENSMUSG00000020116.8_1	chr11	-	1517	7	FSM	ENSMUSG00000020116.8	ENSMUST00000020317.8	1544	7	16	11	16	-11	multi-exon	FALSE	canonical	3	1392	junction_5	81.0276016072438	1014	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAACTAAAAGTAGCAGTC	NA	False	NA	37	True	AGTAAA	-8	NA	17161552	17153208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159310_17159395_17160987_17161138_17161312
ENSMUSG00000020121.16_0	chr10	-	3564	16	ISM	ENSMUSG00000020121.16	ENSMUST00000081688.13	7787	22	191906	3183	-32276	1066	3prime_fragment	FALSE	canonical	3	28	junction_11	7.93473376995095	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCTTAAAAAAAATATGATA	NA	False	NA	NA	False	NA	NA	NA	121691314	121620078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_121621681_121628090_121628431_121628559_121628695_121630511_121630693_121636729_121636810_121640720_121640946_121643765_121643872_121658941_121659077_121661320_121661399_121661538_121661600_121665131_121665235_121667789_121667818_121675934_121676020_121676669_121676868_121689553_121689656_121691209
ENSMUSG00000020121.16_1	chr10	-	4972	22	FSM	ENSMUSG00000020121.16	ENSMUST00000081688.13	7787	22	-505	3320	-505	929	multi-exon	FALSE	canonical	3	28	junction_11	7.39093027569169	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTGCCTTTTGAATT	NA	False	NA	-1	True	NA	NA	NA	121883725	121620215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_121621681_121628090_121628431_121628559_121628695_121630511_121630693_121636729_121636810_121640720_121640946_121643765_121643872_121658941_121659077_121661320_121661399_121661538_121661600_121665131_121665235_121667789_121667818_121675934_121676020_121676669_121676868_121689553_121689656_121691209_121691432_121705621_121705751_121706232_121706416_121732587_121732651_121761720_121761884_121767218_121767415_121883031
ENSMUSG00000020121.16_17	chr10	-	2053	4	ISM	ENSMUSG00000020121.16	ENSMUST00000161996.2	1714	7	12381	-925	12381	925	3prime_fragment	FALSE	canonical	3	41	junction_2	5.35412613473634	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTGTTTGCCTTTTG	NA	False	NA	-5	True	NA	NA	NA	121630628	121620219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_121621681_121628090_121628431_121628559_121628695_121630511
ENSMUSG00000020121.16_4	chr10	-	4940	22	FSM	ENSMUSG00000020121.16	ENSMUST00000020322.12	7711	22	-513	3284	-506	965	multi-exon	FALSE	canonical	3	19	junction_11	9.24570133614962	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACCTCCTGTAGTCCAG	NA	False	NA	35	True	NA	NA	NA	121883726	121620179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_121621681_121628090_121628431_121628559_121628695_121630511_121630693_121636729_121636810_121640720_121640946_121643765_121643872_121658941_121659077_121661320_121661399_121661538_121661600_121664633_121664668_121667789_121667818_121675934_121676020_121676669_121676868_121689553_121689656_121691209_121691432_121705621_121705751_121706232_121706416_121732587_121732651_121761720_121761884_121767218_121767415_121883031
ENSMUSG00000020122.17_1	chr11	+	4655	28	FSM	ENSMUSG00000020122.17	ENSMUST00000020329.13	10208	28	-1	5554	-1	1795	multi-exon	FALSE	canonical	0	0	junction_1	2.52884592816468	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGTAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	16702209	16862604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_16702571_16808895_16809048_16810067_16810252_16812945_16813081_16817230_16817300_16818107_16818227_16819218_16819361_16820975_16821093_16821582_16821710_16821801_16821876_16822845_16822937_16824959_16825160_16828126_16828260_16831463_16831555_16833455_16833614_16837140_16837186_16839912_16840055_16841177_16841301_16843007_16843107_16846893_16847080_16854304_16854461_16855347_16855424_16856735_16856883_16858876_16858975_16859731_16859900_16860207_16860256_16860793_16860897_16861493
ENSMUSG00000020122.17_2	chr11	+	2641	16	FSM	ENSMUSG00000020122.17	ENSMUST00000102884.10	2943	16	9	293	1	-293	multi-exon	FALSE	canonical	0	0	junction_1	1.92757763930679	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTCTGATAAATTCTTA	NA	False	NA	NA	False	AATAAA	-15	NA	16702211	16837630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_16702571_16808895_16809048_16810067_16810252_16812945_16813081_16817230_16817300_16818107_16818227_16819218_16819361_16820975_16821093_16821582_16821710_16821801_16821876_16822845_16822937_16824959_16825160_16828126_16828260_16831463_16831555_16833455_16833614_16837140
ENSMUSG00000020124.11_2	chr10	-	3139	21	FSM	ENSMUSG00000020124.11	ENSMUST00000020334.9	4666	21	20	1507	-6	-15	multi-exon	FALSE	canonical	3	255	junction_15	80.7788802843912	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTTTTGATGAATTATG	NA	False	NA	-13	True	AATAAA	-17	NA	123032838	122949147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
ENSMUSG00000020124.11_3	chr10	-	3225	22	FSM	ENSMUSG00000020124.11	ENSMUST00000220377.2	11525	22	63	8237	-5	-15	multi-exon	TRUE	canonical	3	236	junction_15	99.6636747895759	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTTTTGATGAATTATG	NA	False	NA	-13	True	AATAAA	-17	NA	123032837	122949147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122988945_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
ENSMUSG00000020128.16_1	chr11	+	4062	23	FSM	ENSMUSG00000020128.16	ENSMUST00000109578.8	4273	23	-370	581	-370	4	multi-exon	FALSE	canonical	3	123	junction_2	56.2718460791631	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTATGCAACTACTAATTT	NA	False	NA	2	True	AATAAA	-15	NA	21188910	21270541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_21189372_21213198_21213355_21214665_21214872_21218784_21218864_21221703_21221739_21224997_21225130_21227674_21228061_21241032_21241160_21242023_21242132_21245340_21245397_21248753_21248851_21249977_21250319_21255650_21255781_21256365_21256548_21256908_21257022_21258738_21258803_21261076_21261183_21262239_21262328_21262850_21262973_21263083_21263165_21264918_21265027_21266791_21266887_21269752
ENSMUSG00000020128.16_4	chr11	+	4185	23	FSM	ENSMUSG00000020128.16	ENSMUST00000006221.14	4323	23	-363	501	-363	98	multi-exon	FALSE	canonical	3	201	junction_2	46.1409984237141	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTAGCATTCTGTTTTT	NA	False	NA	96	True	ATTAAA	-17	NA	21188917	21270635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_21189372_21213198_21213355_21214629_21214872_21218784_21218864_21221703_21221739_21224997_21225130_21227674_21228061_21241032_21241160_21242023_21242132_21245340_21245397_21248753_21248851_21249977_21250319_21255650_21255781_21256365_21256548_21256908_21257022_21258738_21258803_21261076_21261183_21262239_21262328_21262850_21262973_21263083_21263165_21264918_21265027_21266791_21266887_21269752
ENSMUSG00000020128.16_7	chr11	+	4553	23	NNC	ENSMUSG00000020128.16	novel	4273	23	NA	NA	-360	-13	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	71.8904699485369	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGTACAAAAACAGACTTAA	NA	False	NA	6	True	AATAAA	-2	NA	21188920	21271109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_21189372_21213198_21213288_21214665_21214872_21218784_21218864_21221703_21221739_21224997_21225130_21227674_21228061_21241032_21241160_21242023_21242132_21245340_21245397_21248753_21248851_21249977_21250319_21255650_21255781_21256365_21256548_21256908_21257022_21258738_21258803_21261076_21261183_21262239_21262328_21262850_21262973_21263083_21263165_21264918_21265027_21266791_21266887_21269752
ENSMUSG00000020130.10_0	chr10	-	3117	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	42	593	42	-593	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTATTTTAGTGTTTTC	NA	False	NA	-8	True	ATTAAA	-8	NA	115087330	115034369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
ENSMUSG00000020130.10_2	chr10	-	3070	16	ISM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	10518	598	10304	-598	3prime_fragment	FALSE	canonical	3	412	junction_10	39.7617348157189	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAAAGCTATTTTAGTG	NA	False	NA	-13	True	ATTAAA	-3	NA	115076854	115034374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753
ENSMUSG00000020132.11_0	chr10	-	1822	7	FSM	ENSMUSG00000020132.11	ENSMUST00000020343.9	4602	7	1	2779	1	-2779	multi-exon	FALSE	canonical	3	420	junction_4	15.542057635833	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGTTTTAGAATGGTT	NA	False	NA	-11	True	ATTAAA	-17	NA	115151495	115125767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_115126817_115130775_115130865_115131333_115131389_115134732_115134797_115137427_115137536_115138636_115138697_115151098
ENSMUSG00000020132.11_18	chr10	-	839	1	FSM	ENSMUSG00000020132.11	ENSMUST00000218831.2	843	1	4	0	1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACACCCGTCGTTGGAGG	NA	False	NA	-8	True	AGTAAA	-10	NA	115151495	115150656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_115150700_115151500
ENSMUSG00000020133.9_0	chr10	-	1180	2	FSM	ENSMUSG00000020133.9	ENSMUST00000020341.9	1649	2	13	456	13	-456	multi-exon	FALSE	canonical	3	349	junction_1	0	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAGTTCTCCCTTAAGC	8730	False	NA	-18	True	ATTAAA	-16	NA	80156358	80154543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80155382_80156016
ENSMUSG00000020133.9_2	chr10	-	791	1	ISM	ENSMUSG00000020133.9	ENSMUST00000020341.9	1649	2	1037	456	1037	-456	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAGTTCTCCCTTAAGC	9754	False	NA	-18	True	ATTAAA	-16	NA	80155334	80154543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80154500_80155300
ENSMUSG00000020134.14_0	chr11	+	3473	7	FSM	ENSMUSG00000020134.14	ENSMUST00000093290.12	3514	7	35	6	35	-6	multi-exon	FALSE	canonical	3	114	junction_5	13.7931142241337	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAGCTATGCGAATTTG	NA	False	NA	21	True	AGTAAA	-9	NA	21041325	21100317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_21041679_21086045_21086186_21090563_21090694_21092555_21092658_21096914_21097113_21097257_21097447_21097956
ENSMUSG00000020134.14_10	chr11	+	950	1	ISM	ENSMUSG00000020134.14	ENSMUST00000093290.12	3514	7	58077	6	13899	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAGCTATGCGAATTTG	2000	False	NA	21	True	AGTAAA	-9	NA	21099367	21100317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_21099400_21100300
ENSMUSG00000020137.6_0	chr10	-	1939	1	ISM	ENSMUSG00000020137.6	ENSMUST00000218842.2	4970	3	14093	0	14068	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAATTTTTGTCATCCCT	NA	False	NA	NA	False	ATTAAA	-13	NA	115206247	115204308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_115204300_115206200
ENSMUSG00000020137.6_1	chr10	-	3513	3	FSM	ENSMUSG00000020137.6	ENSMUST00000218842.2	4970	3	-104	1561	-96	-493	multi-exon	FALSE	canonical	3	8	junction_1	6.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTAATTCTCTGCCTGT	2264	False	NA	NA	False	AATAAA	-14	NA	115220444	115205869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_115208852_115212256_115212453_115220109
ENSMUSG00000020137.6_4	chr10	-	1164	2	FSM	ENSMUSG00000020137.6	ENSMUST00000020346.6	3681	2	-93	2610	-60	-2610	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTTTGTTTCTTTGTTTT	2300	False	NA	NA	False	AATAAA	-19	NA	115220408	115207986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_115208852_115220109
ENSMUSG00000020142.13_0	chr11	-	3885	8	FSM	ENSMUSG00000020142.13	ENSMUST00000004634.7	3872	8	-18	5	11	-5	multi-exon	FALSE	canonical	3	286	junction_4	11.5440593433354	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGCCTGAGTAACGTGT	7772	False	NA	-10	True	NA	NA	NA	20282702	20252209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_20254501_20256465_20256601_20257891_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
ENSMUSG00000020142.13_1	chr11	-	2526	6	ISM	ENSMUSG00000020142.13	ENSMUST00000004634.7	3872	8	-20	4622	9	-4622	5prime_fragment	FALSE	canonical	3	286	junction_2	12.5698050899765	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTAGTTACAGTTTGTTT	7770	False	NA	NA	False	NA	NA	NA	20282704	20256826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
ENSMUSG00000020142.13_2	chr11	-	1989	1	ISM	ENSMUSG00000020142.13	ENSMUST00000109594.8	3926	8	28515	30	28486	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGCCTGAGTAACGTGT	NA	False	NA	-10	True	NA	NA	NA	20254198	20252209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_20252200_20254200
ENSMUSG00000020149.18_24	chr11	+	1681	1	ISM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	23738	6	23561	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATAGATGCGCTTGTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	20175169	20176850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_20175200_20176800
ENSMUSG00000020149.18_4	chr11	+	2813	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	7	7	0	-1	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	2205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATAGATGCGCTTGTTG	NA	False	NA	NA	False	AATAAA	-17	NA	20151438	20176849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
ENSMUSG00000020150.14_1	chr10	-	892	6	FSM	ENSMUSG00000020150.14	ENSMUST00000105363.8	988	6	83	13	-11	0	multi-exon	FALSE	canonical	3	22	junction_3	3.91918358845308	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGAAGACTAGTGGGTT	9332	False	NA	NA	False	AATAAA	-5	NA	80096763	80093997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80094292_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096554
ENSMUSG00000020152.8_1	chr11	-	3611	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	13	7	9	-7	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	1345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATAATTTGAATTTTGTC	1349	False	NA	-11	True	AATAAA	-12	NA	20062900	20012310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
ENSMUSG00000020152.8_2	chr11	-	1786	1	ISM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	48817	7	48771	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATAATTTGAATTTTGTC	NA	False	NA	-11	True	AATAAA	-12	NA	20014096	20012310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_20012300_20014100
ENSMUSG00000020153.15_1	chr10	+	749	8	FSM	ENSMUSG00000020153.15	ENSMUST00000020361.7	758	8	9	0	1	0	multi-exon	FALSE	canonical	3	1255	junction_1	343.259525783067	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTGTGTTCTGTGTGGA	9701	False	NA	23	True	AATAAA	-14	NA	80085294	80092626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUSG00000020153.15_29	chr10	+	719	7	ISM	ENSMUSG00000020153.15	ENSMUST00000020361.7	758	8	2944	0	-919	0	3prime_fragment	FALSE	canonical	3	2110	junction_6	98.5387684563233	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTGTGTTCTGTGTGGA	NA	False	NA	23	True	AATAAA	-14	NA	80088229	80092626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUSG00000020156.17_1	chr10	+	2389	14	FSM	ENSMUSG00000020156.17	ENSMUST00000020365.15	2640	14	248	3	2	0	multi-exon	FALSE	canonical	3	168	junction_1	105.419758317817	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGTCATAGTCATTGC	8466	False	NA	16	True	TATAAA	-14	NA	80062515	80079734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80062539_80064155_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
ENSMUSG00000020156.17_3	chr10	+	3365	13	FSM	ENSMUSG00000020156.17	ENSMUST00000125784.8	3392	13	27	0	2	0	multi-exon	FALSE	canonical	3	168	junction_1	107.02790394202	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGTCATAGTCATTGC	8466	False	NA	16	True	TATAAA	-14	NA	80062515	80079734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80062539_80064155_80064273_80064828_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
ENSMUSG00000020156.17_5	chr10	+	2464	14	NIC	ENSMUSG00000020156.17	novel	3847	7	NA	NA	27	0	combination_of_known_junctions	FALSE	canonical	3	97	junction_1	122.224887305831	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATATGTGTCATAGTCATT	8491	False	NA	14	True	TATAAA	-12	NA	80062540	80079732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80062641_80064155_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
ENSMUSG00000020156.17_56	chr10	+	2367	13	ISM	ENSMUSG00000020156.17	ENSMUST00000020365.15	2640	14	1887	3	1570	0	3prime_fragment	FALSE	canonical	3	405	junction_2	54.231691739138	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGTCATAGTCATTGC	NA	False	NA	16	True	TATAAA	-14	NA	80064154	80079734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
ENSMUSG00000020156.17_74	chr10	+	1734	10	ISM	ENSMUSG00000020156.17	ENSMUST00000125784.8	3392	13	5938	3	-1601	-1	3prime_fragment	FALSE	canonical	3	469	junction_4	48.7733483182449	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATATGTGTCATAGTCAT	NA	False	NA	13	True	TATAAA	-11	NA	80068426	80079731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
ENSMUSG00000020159.9_0	chr11	-	3182	10	FSM	ENSMUSG00000020159.9	ENSMUST00000020366.8	3280	10	-3	101	-1	-101	multi-exon	FALSE	canonical	0	0	junction_2	0.831479419283098	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAAAATGTTTAAAA	8482	False	NA	NA	False	NA	NA	NA	33528960	33500881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_33502843_33504293_33504482_33504967_33505121_33506929_33507068_33513865_33513949_33517212_33517431_33518066_33518135_33522372_33522492_33523317_33523417_33528805
ENSMUSG00000020160.19_0	chr11	-	3183	13	FSM	ENSMUSG00000020160.19	ENSMUST00000068264.14	3196	13	-8	21	3	-8	multi-exon	FALSE	canonical	0	0	junction_7	0.897527467855751	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGGACTGGAAAGATGA	NA	False	NA	NA	False	AATAAA	-9	NA	18968966	18830682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_18831923_18833987_18834083_18834386_18834477_18835592_18835652_18855688_18855766_18891658_18891805_18938267_18938380_18961241_18961389_18962809_18962861_18963631_18963683_18964249_18964392_18966132_18966360_18968220
ENSMUSG00000020163.13_0	chr10	-	410	3	FSM	ENSMUSG00000020163.13	ENSMUST00000020372.6	445	3	34	1	-1	0	multi-exon	FALSE	canonical	3	4161	junction_1	104.5	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTGGCTCCTTCCTCAT	NA	False	NA	-2	True	ATTAAA	-20	NA	80242630	80238831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80238990_80239969_80240121_80242529
ENSMUSG00000020166.16_0	chr10	-	2795	16	FSM	ENSMUSG00000020166.16	ENSMUST00000105267.8	2800	16	3	2	-1	-2	multi-exon	FALSE	canonical	3	333	junction_15	67.9643697503005	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGCAGTGTTGGCTTTG	NA	False	NA	-8	True	AATAAA	-16	NA	116417402	116321072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ENSMUSG00000020166.16_1	chr10	-	2727	16	FSM	ENSMUSG00000020166.16	ENSMUST00000169921.8	2120	16	13	-620	-2	-1	multi-exon	FALSE	canonical	3	93	junction_15	117.305110242005	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCAGTGTTGGCTTTGA	NA	False	NA	-7	True	AATAAA	-17	NA	116417403	116321071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385011_116417357
ENSMUSG00000020166.16_2	chr10	-	2854	17	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	100	junction_15	145.637593339598	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGCAGTGTTGGCTTTG	NA	False	NA	-8	True	AATAAA	-16	NA	116417403	116321072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385081_116417357
ENSMUSG00000020166.16_3	chr10	-	2384	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	144.203246804255	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGCAGTGTTGGCTTTG	NA	False	NA	-8	True	AATAAA	-16	NA	116417402	116321072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ENSMUSG00000020166.16_6	chr10	-	2672	15	FSM	ENSMUSG00000020166.16	ENSMUST00000168036.8	2693	15	14	7	-1	-2	multi-exon	FALSE	canonical	3	50	junction_13	136.561565692876	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGCAGTGTTGGCTTTG	NA	False	NA	-8	True	AATAAA	-16	NA	116417402	116321072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116384937_116385081_116417357
ENSMUSG00000020166.16_9	chr10	-	2788	17	NIC	ENSMUSG00000020166.16	novel	2955	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	93	junction_16	168.781466973569	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116417405	116321070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385011_116417357
ENSMUSG00000020167.15_0	chr10	-	2869	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105343.8	2920	19	1	50	1	11	multi-exon	FALSE	canonical	3	359	junction_12	245.119472004073	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTATCGTCATATTTC	NA	False	NA	-3	True	TATAAA	-25	NA	80269480	80245430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ENSMUSG00000020167.15_11	chr10	-	2877	19	FSM	ENSMUSG00000020167.15	ENSMUST00000020377.13	2842	19	-25	-10	1	10	multi-exon	FALSE	canonical	3	359	junction_12	305.080706788091	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAATTTATCGTCATATTT	NA	False	NA	-4	True	TATAAA	-24	NA	80269480	80245431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ENSMUSG00000020167.15_12	chr10	-	2868	19	FSM	ENSMUSG00000020167.15	ENSMUST00000020379.13	2829	19	-10	-29	-2	11	multi-exon	TRUE	canonical	3	581	junction_5	199.277305392371	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTATCGTCATATTTC	NA	False	NA	-3	True	TATAAA	-25	NA	80269479	80245430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ENSMUSG00000020167.15_15	chr10	-	2881	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105342.8	2928	19	-3	50	1	11	multi-exon	FALSE	canonical	3	359	junction_12	316.935193165206	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTATCGTCATATTTC	NA	False	NA	-3	True	TATAAA	-25	NA	80269480	80245430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ENSMUSG00000020167.15_3	chr10	-	2865	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105345.10	2950	19	2	83	-2	11	multi-exon	FALSE	canonical	3	747	junction_5	176.383700711101	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTATCGTCATATTTC	NA	False	NA	-3	True	TATAAA	-25	NA	80269479	80245430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ENSMUSG00000020167.15_6	chr10	-	2875	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105346.10	2839	19	-25	-11	1	11	multi-exon	FALSE	canonical	3	458	junction_2	257.439271275891	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTATCGTCATATTTC	NA	False	NA	-3	True	TATAAA	-25	NA	80269480	80245430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ENSMUSG00000020167.15_8	chr10	-	2877	19	NIC	ENSMUSG00000020167.15	novel	2928	19	NA	NA	-2	11	combination_of_known_junctions	FALSE	canonical	3	458	junction_2	272.362803836317	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTATCGTCATATTTC	NA	False	NA	-3	True	TATAAA	-25	NA	80269479	80245430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ENSMUSG00000020167.15_9	chr10	-	2871	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105344.8	2946	19	-8	83	-2	11	multi-exon	FALSE	canonical	3	359	junction_12	261.05737035618	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTATCGTCATATTTC	NA	False	NA	-3	True	TATAAA	-25	NA	80269479	80245430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
ENSMUSG00000020170.5_0	chr10	-	2861	1	ISM	ENSMUSG00000020170.5	ENSMUST00000020381.5	6420	10	75527	696	57863	-696	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACTGGCCCTCTGGCCCC	4998	False	NA	-10	True	AATAAA	-20	NA	116908888	116906027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_116906000_116908900
ENSMUSG00000020170.5_1	chr10	-	5729	10	FSM	ENSMUSG00000020170.5	ENSMUST00000020381.5	6420	10	-2	693	-2	-693	multi-exon	FALSE	canonical	3	66	junction_1	21.0226215606891	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCCCTCTGGCCCCTCT	NA	False	NA	-7	True	AATAAA	-23	NA	116984417	116906024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_116910785_116912715_116912880_116913416_116913576_116914664_116914852_116916926_116917019_116920936_116921029_116935847_116935873_116936530_116936574_116938017_116938104_116984296
ENSMUSG00000020170.5_2	chr10	-	5960	4	ISM	ENSMUSG00000020170.5	ENSMUST00000020381.5	6420	10	69564	3	51900	-3	3prime_fragment	FALSE	canonical	3	66	junction_1	13.490737563232	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTACGTAAAGTTTTACTG	4797	False	NA	-8	True	AATAAA	-25	NA	116914851	116905334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_116910785_116912715_116912880_116913416_116913576_116914664
ENSMUSG00000020170.5_7	chr10	-	5767	9	NIC	ENSMUSG00000020170.5	novel	6420	10	NA	NA	1	-594	combination_of_known_splicesites	FALSE	canonical	2	2	junction_7	38.4285050450834	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGTGTGGCTTTGTGGA	NA	False	NA	0	True	AATAAA	-20	NA	116984399	116905925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_116910785_116912715_116912880_116913416_116913576_116914664_116914852_116916926_116917019_116920936_116921029_116935847_116935873_116938017_116938104_116984296
ENSMUSG00000020170.5_8	chr10	-	5432	5	ISM	ENSMUSG00000020170.5	ENSMUST00000020381.5	6420	10	67426	594	49762	-594	3prime_fragment	FALSE	canonical	3	66	junction_1	27.3072792493137	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGTGTGGCTTTGTGGA	9101	False	NA	0	True	AATAAA	-20	NA	116916989	116905925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_116910785_116912715_116912880_116913416_116913576_116914664_116914852_116916926
ENSMUSG00000020171.9_0	chr10	-	1306	7	FSM	ENSMUSG00000020171.9	ENSMUST00000020382.8	1327	7	26	-5	9	4	multi-exon	FALSE	canonical	3	274	junction_4	39.2074256005444	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTTGTGACTTC	3397	False	NA	-9	True	AATAAA	-19	NA	117060386	117051121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056333_117056436_117056504_117058078_117058199_117060163
ENSMUSG00000020171.9_3	chr10	-	417	1	Genic_Genomic	ENSMUSG00000020171.9	novel	NA	NA	NA	NA	1725	4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTTGTGACTTC	NA	False	NA	-9	True	AATAAA	-19	NA	117051538	117051121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_117051100_117051500
ENSMUSG00000020171.9_9	chr10	-	1025	6	ISM	ENSMUSG00000020171.9	ENSMUST00000020382.8	1327	7	2272	-5	2255	4	3prime_fragment	FALSE	canonical	3	274	junction_4	37.3363094051889	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTTGTGACTTC	5643	False	NA	-9	True	AATAAA	-19	NA	117058140	117051121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056333_117056436_117056504_117058078
ENSMUSG00000020173.18_0	chr11	-	5519	14	FSM	ENSMUSG00000020173.18	ENSMUST00000109651.9	5541	14	21	1	18	-1	multi-exon	FALSE	canonical	3	119	junction_9	120.525034842014	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCGTGTGGACTTCA	NA	False	NA	-4	True	AATAAA	-17	NA	12414939	12186678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12256957_12257129_12259613_12259753_12293743_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
ENSMUSG00000020173.18_1	chr11	-	5354	13	FSM	ENSMUSG00000020173.18	ENSMUST00000109650.8	5271	13	-86	3	12	-1	multi-exon	FALSE	canonical	3	119	junction_8	114.138895649117	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCGTGTGGACTTCA	NA	False	NA	-4	True	AATAAA	-17	NA	12414945	12186678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12259613_12259753_12293743_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
ENSMUSG00000020173.18_12	chr11	-	5427	14	NIC	ENSMUSG00000020173.18	novel	5615	15	NA	NA	14	-1	combination_of_known_junctions	FALSE	canonical	3	235	junction_6	74.428711772371	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCGTGTGGACTTCA	NA	False	NA	-4	True	AATAAA	-17	NA	12414943	12186678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12259613_12259753_12293743_12293918_12315104_12315180_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
ENSMUSG00000020173.18_15	chr11	-	5602	15	NNC	ENSMUSG00000020173.18	novel	5615	15	NA	NA	19	-1	at_least_one_novel_splicesite	FALSE	canonical	3	125	junction_3	116.000901650261	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCGTGTGGACTTCA	NA	False	NA	-4	True	AATAAA	-17	NA	12414938	12186678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_12188060_12199649_12199914_12201022_12201143_12203079_12204972_12206144_12206243_12216855_12217145_12256957_12257129_12259613_12259753_12293743_12293918_12315104_12315180_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
ENSMUSG00000020173.18_2	chr11	-	5600	15	FSM	ENSMUSG00000020173.18	ENSMUST00000046755.14	5615	15	12	3	12	-1	multi-exon	FALSE	canonical	3	223	junction_7	88.5788303358848	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCGTGTGGACTTCA	NA	False	NA	-4	True	AATAAA	-17	NA	12414945	12186678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12256957_12257129_12259613_12259753_12293743_12293918_12315104_12315180_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
ENSMUSG00000020173.18_7	chr11	-	2889	4	ISM	ENSMUSG00000020173.18	ENSMUST00000174874.8	5451	15	157932	1	115428	-1	3prime_fragment	FALSE	canonical	3	419	junction_3	30.0702880302504	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCGTGTGGACTTCA	NA	False	NA	-4	True	AATAAA	-17	NA	12204212	12186678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088
ENSMUSG00000020176.18_0	chr11	-	5057	17	FSM	ENSMUSG00000020176.18	ENSMUST00000093321.12	5061	17	3	1	3	-1	multi-exon	FALSE	canonical	3	35	junction_14	7.38135319572231	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCCTGTCGTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	11987398	11880508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_11883610_11884198_11884293_11886717_11886806_11887000_11887068_11887806_11887924_11888409_11888485_11893881_11893981_11894815_11894927_11895494_11895633_11895963_11896033_11896686_11896803_11901502_11901660_11904743_11904909_11917531_11917686_11920422_11920643_11937595_11937675_11987191
ENSMUSG00000020176.18_1	chr11	-	1956	1	ISM	ENSMUSG00000020176.18	ENSMUST00000109654.8	4755	16	95508	0	6153	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTCCTGTCGTGTTT	7937	False	NA	NA	False	AATAAA	-16	NA	11882463	11880507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_11880500_11882500
ENSMUSG00000020176.18_10	chr11	-	4187	12	ISM	ENSMUSG00000020176.18	ENSMUST00000109654.8	4755	16	76355	3	4408	-3	3prime_fragment	FALSE	canonical	3	40	junction_4	6.0807241847966	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTGGTGTCCTGTCGTG	NA	False	NA	NA	False	AATAAA	-13	NA	11901616	11880510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_11883610_11884198_11884293_11886717_11886806_11887000_11887068_11887806_11887924_11888409_11888485_11893881_11893981_11894815_11894927_11895494_11895633_11895963_11896033_11896686_11896803_11901502
ENSMUSG00000020176.18_4	chr11	-	4472	14	ISM	ENSMUSG00000020176.18	ENSMUST00000093321.12	5061	17	69796	0	3037	0	3prime_fragment	TRUE	canonical	3	40	junction_4	5.85727686793892	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTCCTGTCGTGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	11917605	11880507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_11883610_11884198_11884293_11886717_11886806_11887000_11887068_11887806_11887924_11888409_11888485_11893881_11893981_11894815_11894927_11895494_11895633_11895963_11896033_11896686_11896803_11901502_11901660_11904743_11904909_11917531
ENSMUSG00000020180.11_0	chr10	+	651	4	FSM	ENSMUSG00000020180.11	ENSMUST00000020397.11	3036	4	467	1918	4	45	multi-exon	FALSE	canonical	3	3512	junction_3	116.998575489904	994	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGTGAGGCTTTTTTG	1869	False	NA	30	True	AATAAA	-17	NA	75353851	75371297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_75353960_75355147_75355295_75368010_75368204_75371094
ENSMUSG00000020182.17_0	chr11	-	1987	15	FSM	ENSMUSG00000020182.17	ENSMUST00000109659.9	1954	15	-39	6	-39	-6	multi-exon	FALSE	canonical	2	3	junction_14	28.5478474116129	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACTAACTGTATTGAGTA	NA	False	NA	-9	True	AATAAA	-13	NA	11840447	11764108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11840337
ENSMUSG00000020182.17_15	chr11	-	2010	15	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-1752	-3	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_14	27.1151174040743	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAACTGTATTGAGTAAGC	3886	False	NA	-6	True	AATAAA	-16	NA	11832381	11764105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11832251
ENSMUSG00000020182.17_4	chr11	-	1027	6	ISM	ENSMUSG00000020182.17	ENSMUST00000109659.9	1954	15	61128	6	-6359	-6	3prime_fragment	FALSE	canonical	3	63	junction_5	20.3666393889615	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACTAACTGTATTGAGTA	NA	False	NA	-9	True	AATAAA	-13	NA	11779280	11764108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101
ENSMUSG00000020182.17_5	chr11	-	1989	2	ISM	ENSMUSG00000020182.17	ENSMUST00000136810.8	964	5	6136	1	6136	-1	3prime_fragment	FALSE	canonical	3	119	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTATTGAGTAAGCGT	3146	False	NA	-4	True	AATAAA	-18	NA	11766785	11764103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_11764518_11765210
ENSMUSG00000020182.17_6	chr11	-	993	5	FSM	ENSMUSG00000020182.17	ENSMUST00000136810.8	964	5	-30	1	-30	-1	multi-exon	FALSE	canonical	0	0	junction_4	46.0271658914602	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTATTGAGTAAGCGT	NA	False	NA	-4	True	AATAAA	-18	NA	11772951	11764103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772791
ENSMUSG00000020182.17_7	chr11	-	1552	12	ISM	ENSMUSG00000020182.17	ENSMUST00000109659.9	1954	15	17160	3	7381	-3	3prime_fragment	TRUE	canonical	3	45	junction_6	24.3211977738973	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAACTGTATTGAGTAAGC	NA	False	NA	-6	True	AATAAA	-16	NA	11823248	11764105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133
ENSMUSG00000020182.17_8	chr11	-	2008	15	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-869	-6	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_14	27.3593807365173	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACTAACTGTATTGAGTA	4769	False	NA	-9	True	AATAAA	-13	NA	11831498	11764108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11831367
ENSMUSG00000020183.12_0	chr10	+	2776	9	FSM	ENSMUSG00000020183.12	ENSMUST00000020399.6	5195	9	1	2418	1	0	multi-exon	FALSE	canonical	0	0	junction_8	2.14694550466471	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATCTGAGTAATTTTGT	NA	False	NA	NA	False	NA	NA	NA	117465405	117520839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_117465433_117465625_117465789_117495672_117495771_117503853_117504027_117506071_117506257_117507500_117507672_117511844_117511998_117515867_117516017_117519182
ENSMUSG00000020184.16_0	chr10	-	3023	12	FSM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	54	22	7	-2	multi-exon	FALSE	canonical	3	316	junction_11	63.7658423031336	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGAGATTTGTCTTACA	NA	False	NA	-21	True	AATAAA	-19	NA	117546609	117524801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850_117545934_117546456
ENSMUSG00000020184.16_13	chr10	-	1528	1	ISM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	20334	22	1096	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGAGATTTGTCTTACA	NA	False	NA	-21	True	AATAAA	-19	NA	117526329	117524801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_117524800_117526300
ENSMUSG00000020184.16_2	chr10	-	3095	11	ISM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	505	22	39	-2	3prime_fragment	FALSE	canonical	3	473	junction_6	30.8506077735918	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGAGATTTGTCTTACA	NA	False	NA	-21	True	AATAAA	-19	NA	117546158	117524801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850
ENSMUSG00000020184.16_6	chr10	-	2945	11	NIC	ENSMUSG00000020184.16	novel	3099	12	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	99	junction_9	136.92187553492	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGAGATTTGTCTTACA	NA	False	NA	-21	True	AATAAA	-19	NA	117546616	117524801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545850_117545934_117546456
ENSMUSG00000020184.16_7	chr10	-	3011	10	NIC	ENSMUSG00000020184.16	novel	3099	12	NA	NA	39	-1	combination_of_known_junctions	FALSE	canonical	3	99	junction_9	135.429996494932	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGAGATTTGTCTTACAC	NA	False	NA	-20	True	AATAAA	-20	NA	117546158	117524800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545850
ENSMUSG00000020185.17_1	chr10	+	2867	3	FSM	ENSMUSG00000020185.17	ENSMUST00000174857.8	2865	3	-4	2	-4	-2	multi-exon	FALSE	canonical	3	33	junction_1	1.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTCGTTTTCTTTTCAT	NA	False	NA	NA	False	ATTAAA	-17	NA	110581321	110592496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_110581541_110582192_110582286_110589941
ENSMUSG00000020185.17_12	chr10	+	3247	3	ISM	ENSMUSG00000020185.17	ENSMUST00000073781.12	5473	13	35415	32	17027	-32	3prime_fragment	FALSE	canonical	3	28	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATGTATTTAGTAAG	NA	False	NA	1	True	TATAAA	-11	NA	110616743	110623213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_110616884_110618058_110618481_110620528
ENSMUSG00000020185.17_13	chr10	+	3298	2	ISM	ENSMUSG00000020185.17	ENSMUST00000073781.12	5473	13	36556	15	18168	-15	3prime_fragment	FALSE	canonical	3	28	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACGTGTATGTTATATTA	NA	False	NA	18	True	AATAAA	-11	NA	110617884	110623230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_110618481_110620528
ENSMUSG00000020185.17_15	chr10	+	1789	1	ISM	ENSMUSG00000020185.17	ENSMUST00000073781.12	5473	13	40113	15	21725	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACGTGTATGTTATATTA	NA	False	NA	18	True	AATAAA	-11	NA	110621441	110623230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_110621400_110623200
ENSMUSG00000020185.17_2	chr10	+	5450	13	FSM	ENSMUSG00000020185.17	ENSMUST00000073781.12	5473	13	2	21	2	-21	multi-exon	FALSE	canonical	3	19	junction_6	6.98808509774554	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTAAGACGTGTATGTT	NA	False	NA	12	True	AATAAA	-5	NA	110581330	110623224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_110581541_110582192_110582286_110589941_110590221_110595678_110595848_110599787_110600079_110601476_110601636_110602977_110603113_110610502_110610689_110611179_110611250_110614679_110615164_110616627_110616884_110618058_110618481_110620528
ENSMUSG00000020185.17_21	chr10	+	3544	4	ISM	ENSMUSG00000020185.17	ENSMUST00000073781.12	5473	13	33671	15	15283	-15	3prime_fragment	FALSE	canonical	3	28	junction_2	0.942809041582063	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACGTGTATGTTATATTA	NA	False	NA	18	True	AATAAA	-11	NA	110614999	110623230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_110615164_110616627_110616884_110618058_110618481_110620528
ENSMUSG00000020185.17_5	chr10	+	3805	12	ISM	ENSMUSG00000020185.17	ENSMUST00000073781.12	5473	13	1	3715	1	-1841	5prime_fragment	TRUE	canonical	3	19	junction_6	7.27159082029863	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCATTAATCTTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	110581329	110619530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_110581541_110582192_110582286_110589941_110590221_110595678_110595848_110599787_110600079_110601476_110601636_110602977_110603113_110610502_110610689_110611179_110611250_110614679_110615164_110616627_110616884_110618058
ENSMUSG00000020185.17_6	chr10	+	5453	13	FSM	ENSMUSG00000020185.17	ENSMUST00000173471.8	3567	13	-27	-1859	18	-15	multi-exon	FALSE	canonical	0	0	junction_1	10.7480618407848	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACGTGTATGTTATATTA	NA	False	NA	18	True	AATAAA	-11	NA	110581346	110623230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_110581541_110582179_110582286_110589941_110590221_110595678_110595848_110599787_110600079_110601476_110601636_110602977_110603113_110610502_110610689_110611179_110611250_110614679_110615164_110616627_110616884_110618058_110618481_110620528
ENSMUSG00000020186.8_0	chr10	+	866	6	FSM	ENSMUSG00000020186.8	ENSMUST00000020403.7	1384	6	390	128	-11	-20	multi-exon	FALSE	canonical	3	157	junction_1	20.350921355064	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGGTACCACCTCTTAA	NA	False	NA	11	True	AATAAA	-12	NA	110756039	110775355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110773597_110773728_110774497_110774592_110775071
ENSMUSG00000020186.8_1	chr10	+	1346	5	FSM	ENSMUSG00000020186.8	ENSMUST00000220409.2	780	5	-11	-555	-11	-20	multi-exon	FALSE	canonical	3	157	junction_1	21.9374109684803	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGGTACCACCTCTTAA	NA	False	NA	11	True	AATAAA	-12	NA	110756039	110775355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110773597_110773728_110774497
ENSMUSG00000020186.8_3	chr10	+	778	5	ISM	ENSMUSG00000020186.8	ENSMUST00000020403.7	1384	6	12178	128	339	-20	3prime_fragment	FALSE	canonical	3	202	junction_1	3.56195171219375	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGGTACCACCTCTTAA	NA	False	NA	11	True	AATAAA	-12	NA	110767827	110775355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_110767929_110771008_110771178_110773597_110773728_110774497_110774592_110775071
ENSMUSG00000020186.8_4	chr10	+	637	4	ISM	ENSMUSG00000020186.8	ENSMUST00000220301.2	720	5	502	35	502	-35	3prime_fragment	FALSE	canonical	3	207	junction_1	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATTTTGGCTTGATTTG	NA	False	NA	-4	True	NA	NA	NA	110771033	110775340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_110771178_110773597_110773728_110774497_110774592_110775071
ENSMUSG00000020186.8_5	chr10	+	424	3	ISM	ENSMUSG00000020186.8	ENSMUST00000220301.2	720	5	3153	17	3153	-17	3prime_fragment	FALSE	canonical	3	208	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTACCACCTCTTAATTA	NA	False	NA	14	True	AATAAA	-15	NA	110773684	110775358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_110773728_110774497_110774592_110775071
ENSMUSG00000020189.16_1	chr10	+	7139	24	FSM	ENSMUSG00000020189.16	ENSMUST00000105275.9	7204	24	55	10	5	-10	multi-exon	FALSE	canonical	3	53	junction_5	11.7407406303097	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGCAATCTGTGATCC	NA	False	NA	-3	True	AATAAA	-8	NA	111000667	111133100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_111001058_111040595_111040702_111060532_111060570_111069413_111069552_111091548_111091620_111099040_111099119_111101395_111101498_111103465_111103670_111105218_111105304_111106351_111106524_111107934_111108173_111108886_111109072_111110851_111110934_111112320_111112420_111113107_111113205_111116150_111116250_111117987_111118086_111120190_111120281_111121976_111122114_111123687_111123874_111124553_111124642_111125649_111125756_111127351_111127455_111128952
ENSMUSG00000020189.16_11	chr10	+	6144	17	ISM	ENSMUSG00000020189.16	ENSMUST00000105275.9	7204	24	102925	11	19609	-11	3prime_fragment	FALSE	canonical	3	57	junction_8	11.9373363863133	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAGCAATCTGTGATC	NA	False	NA	-4	True	AATAAA	-7	NA	111103537	111133099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_111103670_111105218_111105304_111106351_111106524_111107934_111108173_111108886_111109072_111110851_111110934_111112320_111112420_111113107_111113205_111116150_111116250_111117987_111118086_111120190_111120281_111121976_111122114_111123687_111123874_111124553_111124642_111125649_111125756_111127351_111127455_111128952
ENSMUSG00000020189.16_12	chr10	+	5899	15	ISM	ENSMUSG00000020189.16	ENSMUST00000105275.9	7204	24	105768	10	22452	-10	3prime_fragment	FALSE	canonical	3	57	junction_6	11.6218039275584	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGCAATCTGTGATCC	NA	False	NA	-3	True	AATAAA	-8	NA	111106380	111133100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_111106524_111107934_111108173_111108886_111109072_111110851_111110934_111112320_111112420_111113107_111113205_111116150_111116250_111117987_111118086_111120190_111120281_111121976_111122114_111123687_111123874_111124553_111124642_111125649_111125756_111127351_111127455_111128952
ENSMUSG00000020189.16_18	chr10	+	2347	1	ISM	ENSMUSG00000020189.16	ENSMUST00000105275.9	7204	24	130141	10	46825	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGCAATCTGTGATCC	NA	False	NA	-3	True	AATAAA	-8	NA	111130753	111133100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_111130800_111133100
ENSMUSG00000020189.16_7	chr10	+	7059	23	FSM	ENSMUSG00000020189.16	ENSMUST00000095310.3	3622	23	48	-3485	48	-10	multi-exon	FALSE	canonical	2	6	junction_2	18.6097370763154	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGCAATCTGTGATCC	NA	False	NA	-3	True	AATAAA	-8	NA	111000710	111133100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_111001058_111040595_111040702_111069413_111069552_111091548_111091620_111099040_111099119_111101395_111101498_111103465_111103670_111105218_111105304_111106351_111106524_111107934_111108173_111108886_111109072_111110851_111110934_111112320_111112420_111113107_111113205_111116150_111116250_111117987_111118086_111120190_111120281_111121976_111122114_111123687_111123874_111124553_111124642_111125649_111125756_111127351_111127455_111128952
ENSMUSG00000020190.14_0	chr10	-	3391	14	NNC	ENSMUSG00000020190.14	novel	3439	14	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	433	junction_2	28.6420471318886	963	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTCTGTGCAGTGAC	9982	False	NA	-51	True	AATAAA	-9	NA	80512126	80501165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569_80507672_80507761_80507850_80511657_80511775_80511956
ENSMUSG00000020190.14_1	chr10	-	3433	14	FSM	ENSMUSG00000020190.14	ENSMUST00000200082.5	3439	14	1	5	1	0	multi-exon	FALSE	canonical	3	105	junction_13	111.384031022692	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTCTGTGCAGTGAC	9982	False	NA	-51	True	AATAAA	-9	NA	80512126	80501165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569_80507672_80507761_80507850_80511657_80511775_80511914
ENSMUSG00000020193.4_0	chr11	-	4019	7	NIC	ENSMUSG00000020193.4	novel	4248	8	NA	NA	153	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	3.62476052848859	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAGTAGCCATGAGAAAAG	NA	False	NA	NA	False	AATAAA	-19	NA	11412255	11229624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_11232698_11302521_11302700_11358388_11358608_11365187_11365338_11368161_11368288_11409698_11409780_11412063
ENSMUSG00000020196.11_0	chr10	-	7326	37	NIC	ENSMUSG00000020196.11	novel	7417	37	NA	NA	-3	-7	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	18.2485201497086	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATAGTCTCTGCCTCTTT	NA	False	NA	-11	True	AATAAA	-6	NA	75600153	75481952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467_75494632_75520125_75520240_75530548_75530881_75535746_75535930_75549373_75549466_75551432_75551585_75553271_75553533_75557111_75557374_75561092_75561239_75561382_75561590_75562691_75562854_75568233_75568350_75569453_75569611_75570799_75571043_75573154_75573350_75574044_75574198_75575159_75575348_75575853_75575933_75578078_75578297_75579035_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
ENSMUSG00000020196.11_13	chr10	-	4702	21	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	29163	7	-1382	-7	3prime_fragment	FALSE	canonical	3	64	junction_10	14.2143413494963	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATAGTCTCTGCCTCTTT	NA	False	NA	-11	True	AATAAA	-6	NA	75570987	75481952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467_75494632_75520125_75520240_75530548_75530881_75535746_75535930_75549286_75549466_75551432_75551585_75553271_75553533_75557111_75557374_75561092_75561239_75561382_75561590_75562691_75562854_75568233_75568350_75569453_75569611_75570799
ENSMUSG00000020196.11_19	chr10	-	1734	6	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	107112	7	10628	-7	3prime_fragment	FALSE	canonical	3	93	junction_4	10.4804580052591	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATAGTCTCTGCCTCTTT	NA	False	NA	-11	True	AATAAA	-6	NA	75493038	75481952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608
ENSMUSG00000020196.11_34	chr10	-	2212	8	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	105550	7	9066	-7	3prime_fragment	FALSE	canonical	3	86	junction_6	11.9026664822533	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATAGTCTCTGCCTCTTT	NA	False	NA	-11	True	AATAAA	-6	NA	75494600	75481952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467
ENSMUSG00000020196.11_5	chr10	-	2515	10	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	69444	7	5503	-7	3prime_fragment	FALSE	canonical	3	86	junction_6	12.1969435556112	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATAGTCTCTGCCTCTTT	NA	False	NA	-11	True	AATAAA	-6	NA	75530706	75481952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467_75494632_75520125_75520240_75530548
ENSMUSG00000020196.11_50	chr10	-	5000	23	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	1	74111	1	1096	5prime_fragment	FALSE	canonical	3	63	junction_21	9.9474860813596	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAAAATTAGTCGTGAA	NA	False	NA	NA	False	NA	NA	NA	75600149	75556056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75557374_75561092_75561239_75561382_75561590_75562691_75562854_75568233_75568350_75569453_75569611_75570799_75571043_75573154_75573350_75574044_75574198_75575159_75575348_75575853_75575933_75578078_75578297_75579035_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
ENSMUSG00000020196.11_55	chr10	-	2122	11	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	-2	96790	-2	7164	5prime_fragment	FALSE	canonical	3	63	junction_9	9.60676844729798	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGGTGGAGGAGCTGC	NA	False	NA	NA	False	NA	NA	NA	75600152	75578735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
ENSMUSG00000020196.11_6	chr10	-	3350	13	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	48426	0	-246	0	3prime_fragment	FALSE	canonical	3	64	junction_10	16.2093508678033	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTCTTTGCTCATC	8392	False	NA	-4	True	AATAAA	-13	NA	75551724	75481945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467_75494632_75520125_75520240_75530548_75530881_75535746_75535930_75549286_75549466_75551432
ENSMUSG00000020196.11_9	chr10	-	7409	37	FSM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	1	7	1	-7	multi-exon	FALSE	canonical	3	63	junction_35	14.4571258434836	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATAGTCTCTGCCTCTTT	NA	False	NA	-11	True	AATAAA	-6	NA	75600149	75481952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467_75494632_75520125_75520240_75530548_75530881_75535746_75535930_75549286_75549466_75551432_75551585_75553271_75553533_75557111_75557374_75561092_75561239_75561382_75561590_75562691_75562854_75568233_75568350_75569453_75569611_75570799_75571043_75573154_75573350_75574044_75574198_75575159_75575348_75575853_75575933_75578078_75578297_75579035_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
ENSMUSG00000020198.9_1	chr10	-	4773	31	FSM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	24	8	24	-8	multi-exon	FALSE	canonical	1	82	junction_14	55.4957555934586	580	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACATTTGTGTGTTGT	9232	False	NA	-10	True	ATTAAA	-6	NA	80578074	80542797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80543818_80544291_80544372_80544580_80544703_80545034_80545121_80545233_80545323_80545600_80545791_80546253_80546302_80546522_80546667_80547945_80548042_80548429_80548502_80548598_80548765_80549390_80549465_80549806_80549995_80550080_80550157_80550941_80551014_80551704_80551847_80552307_80552454_80553532_80553765_80554842_80555223_80555500_80555647_80556953_80557003_80557424_80557475_80558746_80558797_80559366_80559441_80559524_80559665_80562887_80563018_80563715_80563824_80565811_80565893_80566707_80566789_80568684_80568781_80577729
ENSMUSG00000020205.9_0	chr10	+	1523	2	FSM	ENSMUSG00000020205.9	ENSMUST00000164773.2	1949	2	209	217	209	-217	multi-exon	FALSE	canonical	3	16	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAGAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	111342355	111344289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_111343510_111343920
ENSMUSG00000020211.16_2	chr10	+	1711	9	FSM	ENSMUSG00000020211.16	ENSMUST00000148665.8	2213	9	500	2	-34	-2	multi-exon	FALSE	canonical	3	1171	junction_7	118.037004261376	1123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTGTCTGCTGTGTGT	4852	False	NA	27	True	ATTAAA	-15	NA	80634531	80640756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80634640_80637029_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639653_80639723_80639805
ENSMUSG00000020211.16_7	chr10	+	1725	9	FSM	ENSMUSG00000020211.16	ENSMUST00000151928.8	781	9	-29	-915	-29	-2	multi-exon	FALSE	canonical	3	55	junction_7	448.68263770175	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTGTCTGCTGTGTGT	4857	False	NA	27	True	ATTAAA	-15	NA	80634536	80640756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80634640_80637029_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639634_80639723_80639805
ENSMUSG00000020212.15_0	chr10	+	2932	13	NIC	ENSMUSG00000020212.15	novel	3074	14	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	32	junction_3	21.2053452380919	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACCAACTTGATGCTTC	NA	False	NA	4	True	ATTAAA	-7	NA	117977736	118004895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_117977868_117978754_117978870_117982499_117982877_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
ENSMUSG00000020212.15_14	chr10	+	3099	15	FSM	ENSMUSG00000020212.15	ENSMUST00000163238.9	2461	15	-29	-609	-2	-7	multi-exon	FALSE	canonical	2	2	junction_7	33.0859270903593	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACCAACTTGATGCTTC	NA	False	NA	4	True	ATTAAA	-7	NA	117977734	118004895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117992738_117992769_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
ENSMUSG00000020212.15_2	chr10	+	3066	14	FSM	ENSMUSG00000020212.15	ENSMUST00000020437.13	3074	14	1	7	1	-7	multi-exon	FALSE	canonical	3	66	junction_4	15.3152281412244	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACCAACTTGATGCTTC	NA	False	NA	4	True	ATTAAA	-7	NA	117977737	118004895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
ENSMUSG00000020212.15_26	chr10	+	3759	7	ISM	ENSMUSG00000020212.15	ENSMUST00000020437.13	3074	14	13541	16	-1639	-16	3prime_fragment	FALSE	canonical	3	83	junction_6	8.15304987242334	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATTTAAACACCAACT	8372	False	NA	-5	True	TTTAAA	-13	NA	117991277	118004886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
ENSMUSG00000020212.15_31	chr10	+	2816	12	NIC	ENSMUSG00000020212.15	novel	3074	14	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	32.0750669111597	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACCAACTTGATGCTTC	NA	False	NA	4	True	ATTAAA	-7	NA	117977737	118004895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_117977868_117982499_117982877_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
ENSMUSG00000020212.15_5	chr10	+	2871	12	NIC	ENSMUSG00000020212.15	novel	2922	13	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	2	6	junction_11	33.7594798440207	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACCAACTTGATGCTTC	NA	False	NA	4	True	ATTAAA	-7	NA	117977737	118004895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_117977868_117978754_117978870_117982499_117982877_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118003955
ENSMUSG00000020212.15_7	chr10	+	3055	14	NIC	ENSMUSG00000020212.15	novel	3074	14	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	1	3	junction_4	28.3183508362129	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACCAACTTGATGCTTC	NA	False	NA	4	True	ATTAAA	-7	NA	117977715	118004895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986726_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
ENSMUSG00000020218.12_0	chr10	+	2220	10	FSM	ENSMUSG00000020218.12	ENSMUST00000020439.11	2294	10	60	14	-4	-1	multi-exon	FALSE	canonical	3	14	junction_1	5.2704627669473	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTGAGTACTGTATGG	NA	False	NA	NA	False	AATAAA	-13	NA	120869924	120936541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_120870396_120870870_120871011_120911150_120911260_120918030_120918172_120919792_120919889_120920813_120920910_120926015_120926112_120931903_120932000_120932545_120932642_120935662
ENSMUSG00000020219.8_0	chr10	-	585	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	178	462	-6	-8	multi-exon	FALSE	canonical	3	3643	junction_2	39.5	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAGGCGTGTCACCTCA	5626	False	NA	-15	True	AATAAA	-17	NA	80736625	80735745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80736094_80736315_80736385_80736457
ENSMUSG00000020219.8_2	chr10	-	658	2	FSM	ENSMUSG00000020219.8	ENSMUST00000218149.2	435	2	-9	-214	-6	-8	multi-exon	FALSE	canonical	3	3722	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAGGCGTGTCACCTCA	5626	False	NA	-15	True	AATAAA	-17	NA	80736625	80735745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80736094_80736315
ENSMUSG00000020219.8_5	chr10	-	537	3	FSM	ENSMUSG00000020219.8	ENSMUST00000219896.2	542	3	-6	11	-6	-11	multi-exon	FALSE	canonical	3	269	junction_2	1726.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGCAGGCGTGTCACC	5626	False	NA	-18	True	AATAAA	-14	NA	80736625	80735748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80736094_80736315_80736385_80736502
ENSMUSG00000020220.17_0	chr4	-	2924	3	ISM	ENSMUSG00000020220.17	ENSMUST00000147511.2	802	4	605	-2301	605	1	3prime_fragment	FALSE	canonical	3	34	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGGTTTGGTTTCTTTCTC	NA	False	NA	-3	True	AATAAA	-19	NA	144709926	144699194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144701839_144703097_144703339_144709887
ENSMUSG00000020220.17_1	chr4	-	1683	1	ISM	ENSMUSG00000020220.17	ENSMUST00000036579.14	15849	70	220698	3	9654	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGGTTTGGTTTCTTTCTC	NA	False	NA	-3	True	AATAAA	-19	NA	144700877	144699194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144699200_144700900
ENSMUSG00000020220.17_11	chr4	-	224	1	ISM	ENSMUSG00000020220.17	ENSMUST00000036579.14	15849	70	219989	2171	8945	133	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCTGTGCTGTTGTGAAG	NA	False	NA	-3	True	AATACA	-16	NA	144701586	144701362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144701400_144701600
ENSMUSG00000020220.17_12	chr4	-	2900	17	ISM	ENSMUSG00000020220.17	ENSMUST00000185113.2	10176	52	80457	197	-2427	133	3prime_fragment	FALSE	canonical	3	12	junction_15	8.95627398810465	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCTGTGCTGTTGTGAAG	NA	False	NA	-3	True	AATACA	-16	NA	144801599	144701362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144701839_144703097_144703339_144709887_144710020_144743304_144743501_144746706_144746840_144771530_144771699_144772840_144772976_144780686_144780836_144783039_144783137_144783982_144784133_144789074_144789225_144790133_144790251_144792355_144792536_144795647_144795757_144796514_144796679_144798955_144799065_144801405
ENSMUSG00000020220.17_13	chr4	-	2478	15	ISM	ENSMUSG00000020220.17	ENSMUST00000185113.2	10176	52	85494	200	2610	130	3prime_fragment	FALSE	canonical	3	21	junction_9	7.04938845227162	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGGGCTGTGCTGTTGTG	NA	False	NA	-6	True	AATACA	-13	NA	144796562	144701365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144701839_144703097_144703339_144709887_144710020_144743304_144743501_144746706_144746840_144771530_144771699_144772840_144772976_144780686_144780836_144783039_144783137_144783982_144784133_144789074_144789225_144790133_144790251_144792355_144792536_144795647_144795757_144796514
ENSMUSG00000020220.17_14	chr4	-	874	4	ISM	ENSMUSG00000020220.17	ENSMUST00000185113.2	10176	52	138727	197	-32798	133	3prime_fragment	FALSE	canonical	3	34	junction_2	4.96655480858378	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCTGTGCTGTTGTGAAG	NA	False	NA	-3	True	AATACA	-16	NA	144743329	144701362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144701839_144703097_144703339_144709887_144710020_144743304
ENSMUSG00000020220.17_18	chr4	-	3651	2	ISM	ENSMUSG00000020220.17	ENSMUST00000147511.2	802	4	4264	-138	4264	138	3prime_fragment	FALSE	canonical	3	45	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTTGTGAAGGTTTG	NA	False	NA	2	True	AATACA	-21	NA	144706267	144701357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144701839_144703097
ENSMUSG00000020220.17_19	chr4	-	13572	69	NIC	ENSMUSG00000020220.17	novel	15849	70	NA	NA	15	130	combination_of_known_splicesites	TRUE	canonical	1	4	junction_30	10.5921867626673	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGGGCTGTGCTGTTGTG	NA	False	NA	-6	True	AATACA	-13	NA	144921550	144701365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_144701839_144703097_144703339_144709887_144710020_144743304_144743501_144746706_144746840_144771530_144771699_144772840_144772976_144780686_144780836_144783039_144783137_144783982_144784133_144789074_144789225_144790133_144790251_144792355_144792536_144795647_144795757_144796514_144796679_144798955_144799065_144801405_144801642_144802279_144802404_144807870_144808047_144808250_144808382_144811861_144812005_144813273_144813401_144813694_144813887_144814760_144815009_144818431_144818643_144818774_144818926_144821393_144821442_144822755_144822892_144824580_144824734_144826534_144826638_144832368_144832492_144833499_144833641_144835074_144835165_144837401_144837612_144841276_144841352_144842002_144842214_144844118_144844275_144847821_144847956_144849013_144849277_144852979_144853193_144854506_144854620_144854814_144854987_144858169_144858381_144861007_144861231_144865133_144865317_144867812_144867994_144869741_144869869_144871360_144871452_144874886_144875919_144879216_144879369_144881138_144883353_144887154_144887288_144888567_144888699_144889745_144889917_144890325_144890402_144891125_144891257_144893960_144894141_144894685_144894888_144895045_144895148_144896805_144896975_144898214_144898316_144898647_144898819_144899623_144899729_144901378_144901496_144904581_144904666_144904758_144904950_144907685_144907764_144917065_144917237_144921488
ENSMUSG00000020220.17_25	chr4	-	2695	16	ISM	ENSMUSG00000020220.17	ENSMUST00000185113.2	10176	52	83003	197	119	133	3prime_fragment	FALSE	canonical	3	12	junction_15	8.88194172964949	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCTGTGCTGTTGTGAAG	NA	False	NA	-3	True	AATACA	-16	NA	144799053	144701362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144701839_144703097_144703339_144709887_144710020_144743304_144743501_144746706_144746840_144771530_144771699_144772840_144772976_144780686_144780836_144783039_144783137_144783982_144784133_144789074_144789225_144790133_144790251_144792355_144792536_144795647_144795757_144796514_144796679_144798955
ENSMUSG00000020220.17_28	chr4	-	4687	29	ISM	ENSMUSG00000020220.17	ENSMUST00000185113.2	10176	52	57415	200	-6121	130	3prime_fragment	FALSE	canonical	2	11	junction_28	9.74679434480896	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGGGCTGTGCTGTTGTG	NA	False	NA	-6	True	AATACA	-13	NA	144824641	144701365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144701839_144703097_144703339_144709887_144710020_144743304_144743501_144746706_144746840_144771530_144771699_144772840_144772976_144780686_144780836_144783039_144783137_144783982_144784133_144789074_144789225_144790133_144790251_144792355_144792536_144795647_144795757_144796514_144796679_144798955_144799065_144801405_144801642_144802279_144802404_144807870_144808047_144808250_144808382_144811861_144812005_144813273_144813401_144813694_144813887_144814760_144815009_144818431_144818643_144818774_144818926_144821393_144821442_144822755_144822892_144824580
ENSMUSG00000020220.17_7	chr4	-	3160	5	ISM	ENSMUSG00000020220.17	ENSMUST00000185113.2	10176	52	135256	-1824	30804	-146	3prime_fragment	FALSE	canonical	3	34	junction_2	4.63680924774785	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAGATATAAAA	NA	False	NA	NA	False	NA	NA	NA	144746800	144699341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144701839_144703097_144703339_144709887_144710020_144743304_144743501_144746706
ENSMUSG00000020224.16_0	chr10	+	733	3	FSM	ENSMUSG00000020224.16	ENSMUST00000020444.16	1664	3	8	923	8	95	multi-exon	FALSE	canonical	3	990	junction_2	137	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATGTTATGCTGAAGT	NA	False	NA	4	True	AATAAA	-16	NA	120062982	120067564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_120063029_120063878_120064109_120067107
ENSMUSG00000020224.16_4	chr10	+	879	4	FSM	ENSMUSG00000020224.16	ENSMUST00000220107.2	767	4	-13	-99	-13	99	multi-exon	FALSE	canonical	3	16	junction_3	586.90373997786	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTATGCTGAAGTTGTG	NA	False	NA	8	True	AATAAA	-20	NA	120062993	120067568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_120063029_120063878_120064109_120066314_120066468_120067107
ENSMUSG00000020224.16_6	chr10	+	1121	3	FSM	ENSMUSG00000020224.16	ENSMUST00000130198.3	1463	3	-70	412	14	95	multi-exon	FALSE	canonical	3	35	junction_1	477.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATGTTATGCTGAAGT	NA	False	NA	4	True	AATAAA	-16	NA	120063020	120067564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_120063455_120063878_120064109_120067107
ENSMUSG00000020224.16_7	chr10	+	687	2	ISM	ENSMUSG00000020224.16	ENSMUST00000130198.3	1463	3	785	415	785	92	3prime_fragment	FALSE	canonical	3	990	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAGAATGTTATGCTGA	NA	False	NA	1	True	AATAAA	-13	NA	120063875	120067561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_120064109_120067107
ENSMUSG00000020224.16_8	chr10	+	807	1	ISM	ENSMUSG00000020224.16	ENSMUST00000020444.16	1664	3	4194	512	4078	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTTGGAGTTTGACATT	NA	False	NA	7	True	AATAAA	-16	NA	120067168	120067975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_120067200_120068000
ENSMUSG00000020225.11_2	chr10	+	873	7	FSM	ENSMUSG00000020225.11	ENSMUST00000020446.11	904	7	24	7	-6	-7	multi-exon	FALSE	canonical	3	514	junction_6	43.3628104870214	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCATTCTGTGTTCTTC	NA	False	NA	24	True	ATTAAA	-36	NA	120044678	120060815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_120044848_120051445_120051555_120053408_120053515_120056655_120056690_120057910_120058029_120059741_120059788_120060524
ENSMUSG00000020226.10_1	chr10	-	1963	15	NNC	ENSMUSG00000020226.10	novel	3202	15	NA	NA	-4496	-1133	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	4.04817923294422	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGTAAATGACCGGGAAA	NA	False	NA	NA	False	TATAAA	-15	NA	75951291	75894460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_75894734_75896182_75896289_75898047_75898264_75899787_75899957_75906337_75906489_75908261_75908370_75910813_75910950_75917149_75917371_75925739_75925821_75926512_75926619_75939657_75939763_75942540_75942601_75944331_75944437_75945851_75945924_75951237
ENSMUSG00000020226.10_3	chr10	-	1896	14	NNC	ENSMUSG00000020226.10	novel	3202	15	NA	NA	-4504	-1136	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_13	6.11236016163659	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGGTAAATGACCGGG	NA	False	NA	NA	False	TATAAA	-12	NA	75951299	75894463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_75894734_75896182_75896289_75898047_75898264_75899787_75899957_75906337_75906489_75908261_75908370_75910813_75910950_75917149_75917371_75925739_75925821_75926512_75926619_75939657_75939763_75942540_75942601_75944331_75944437_75951237
ENSMUSG00000020226.10_4	chr10	-	1416	11	NNC	ENSMUSG00000020226.10	novel	3202	15	NA	NA	-4506	-12803	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_8	2.78567765543682	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCACTGTCTGATTGTT	NA	False	NA	NA	False	AATGAA	-18	NA	75951301	75906130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_75906489_75908261_75908370_75910813_75910950_75917149_75917371_75925739_75925821_75926512_75926619_75939657_75939763_75942540_75942601_75944331_75944437_75945851_75945924_75951237
ENSMUSG00000020227.11_0	chr10	-	2991	12	FSM	ENSMUSG00000020227.11	ENSMUST00000020448.11	3097	12	95	11	23	6	multi-exon	FALSE	canonical	2	13	junction_2	3.60440501847255	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACTGTTGTTGTTTTG	NA	False	NA	NA	False	ATTAAA	-6	NA	120037469	119977563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_119979097_119981550_119981716_119981802_119981866_119982335_119982535_120000997_120001117_120002309_120002425_120006222_120006288_120012135_120012288_120013972_120014028_120014600_120014705_120018430_120018614_120037231
ENSMUSG00000020227.11_2	chr10	-	2327	7	ISM	ENSMUSG00000020227.11	ENSMUST00000020448.11	3097	12	31214	6	-67	-6	3prime_fragment	FALSE	canonical	2	13	junction_2	4.19324854180304	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTTGTTTTGTTAAC	NA	False	NA	NA	False	ATTAAA	-11	NA	120006350	119977558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_119979097_119981550_119981716_119981802_119981866_119982335_119982535_120000997_120001117_120002309_120002425_120006222
ENSMUSG00000020228.12_0	chr10	-	4494	13	FSM	ENSMUSG00000020228.12	ENSMUST00000020449.12	4554	13	53	7	53	-7	multi-exon	FALSE	canonical	3	54	junction_7	7.32006375199925	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCATCGCCCAGTCTGTG	NA	False	NA	-10	True	NA	NA	NA	119948839	119919519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_119920879_119925312_119925781_119927513_119927658_119928388_119928594_119930131_119930192_119931005_119931097_119934086_119934242_119937302_119937445_119938674_119938850_119941063_119941943_119944790_119944961_119946737_119947134_119948589
ENSMUSG00000020228.12_2	chr10	-	5220	12	NIC	ENSMUSG00000020228.12	novel	4554	13	NA	NA	-61	-4	intron_retention	FALSE	canonical	3	54	junction_6	7.36644166541196	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCGCCCAGTCTGTGGTT	NA	False	NA	-7	True	NA	NA	NA	119948831	119919516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_119920879_119925312_119925781_119927513_119928594_119930131_119930192_119931005_119931097_119934086_119934242_119937302_119937445_119938674_119938850_119941063_119941943_119944790_119944961_119946737_119947134_119948589
ENSMUSG00000020228.12_3	chr10	-	4080	12	ISM	ENSMUSG00000020228.12	ENSMUST00000020449.12	4554	13	1923	7	1801	-7	3prime_fragment	FALSE	canonical	3	54	junction_7	7.63095046233939	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCATCGCCCAGTCTGTG	NA	False	NA	-10	True	NA	NA	NA	119946969	119919519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_119920879_119925312_119925781_119927513_119927658_119928388_119928594_119930131_119930192_119931005_119931097_119934086_119934242_119937302_119937445_119938674_119938850_119941063_119941943_119944790_119944961_119946737
ENSMUSG00000020228.12_4	chr10	-	1878	3	FSM	ENSMUSG00000020228.12	ENSMUST00000148241.8	1335	3	550	-1093	550	-7	multi-exon	FALSE	canonical	3	71	junction_2	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCATCGCCCAGTCTGTG	NA	False	NA	-10	True	NA	NA	NA	119927564	119919519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_119920879_119925312_119925781_119927513
ENSMUSG00000020228.12_6	chr10	-	704	1	ISM	ENSMUSG00000020228.12	ENSMUST00000020449.12	4554	13	28669	7	7891	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCATCGCCCAGTCTGTG	NA	False	NA	-10	True	NA	NA	NA	119920223	119919519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_119919500_119920200
ENSMUSG00000020228.12_9	chr10	-	3158	10	ISM	ENSMUSG00000020228.12	ENSMUST00000020449.12	4554	13	7470	7	7348	-7	3prime_fragment	FALSE	canonical	3	54	junction_7	6.9602043392737	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCATCGCCCAGTCTGTG	NA	False	NA	-10	True	NA	NA	NA	119941422	119919519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_119920879_119925312_119925781_119927513_119927658_119928388_119928594_119930131_119930192_119931005_119931097_119934086_119934242_119937302_119937445_119938674_119938850_119941063
ENSMUSG00000020230.16_1	chr10	-	2005	11	FSM	ENSMUSG00000020230.16	ENSMUST00000020452.12	2016	11	6	5	-1	0	multi-exon	FALSE	canonical	2	10	junction_3	2.63818119165458	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATTCATTTTGTTCTG	NA	False	NA	NA	False	AATAAA	-13	NA	76073665	76043065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_76043628_76044245_76044418_76045171_76045309_76046231_76046362_76053147_76053324_76056831_76056997_76058282_76058445_76061121_76061305_76062023_76062150_76072545_76072656_76073583
ENSMUSG00000020230.16_2	chr10	-	2012	11	FSM	ENSMUSG00000020230.16	ENSMUST00000099571.10	2052	11	30	10	1	0	multi-exon	FALSE	canonical	2	4	junction_10	3.8262252939418	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATTCATTTTGTTCTG	NA	False	NA	NA	False	AATAAA	-13	NA	76073669	76043065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_76043628_76044245_76044418_76045171_76045309_76046231_76046362_76053147_76053324_76056831_76056997_76058282_76058445_76061121_76061305_76062023_76062150_76072545_76072659_76073583
ENSMUSG00000020231.16_0	chr10	-	6347	38	FSM	ENSMUSG00000020231.16	ENSMUST00000036033.14	6322	38	-25	0	6	0	multi-exon	FALSE	canonical	3	16	junction_36	7.13728468849439	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGCATTTTGAAATGT	NA	False	NA	-14	True	AATAAA	-16	NA	76181119	76098884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_76100708_76101331_76101456_76102150_76102326_76104325_76104401_76105937_76105996_76106229_76106292_76108366_76108538_76108868_76109038_76109982_76110114_76110822_76110933_76112162_76112275_76112417_76112540_76114321_76114446_76115539_76115621_76115690_76115801_76116509_76116712_76118346_76118462_76121359_76121488_76122195_76122277_76123146_76123284_76126841_76126982_76128145_76128261_76130327_76130448_76131900_76131995_76132186_76132252_76133588_76133692_76134086_76134197_76134503_76134628_76135736_76135848_76138037_76138130_76140849_76141048_76142906_76143027_76149009_76149139_76153700_76153929_76155300_76155421_76157323_76157441_76163535_76163608_76180940
ENSMUSG00000020231.16_1	chr10	-	1190	1	NIC	ENSMUSG00000020231.16	novel	650	4	NA	NA	1268	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGCATTTTGAAATGT	NA	False	NA	-14	True	AATAAA	-16	NA	76100074	76098884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_76098900_76100100
ENSMUSG00000020231.16_4	chr10	-	3842	18	ISM	ENSMUSG00000020231.16	ENSMUST00000036033.14	6322	38	59657	0	218	0	3prime_fragment	TRUE	canonical	3	20	junction_17	6.89817186553838	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGCATTTTGAAATGT	NA	False	NA	-14	True	AATAAA	-16	NA	76121437	76098884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_76100708_76101331_76101456_76102150_76102326_76104325_76104401_76105937_76105996_76106229_76106292_76108366_76108538_76108868_76109038_76109982_76110114_76110822_76110933_76112162_76112275_76112417_76112540_76114321_76114446_76115539_76115621_76115690_76115801_76116509_76116712_76118346_76118462_76121359
ENSMUSG00000020231.16_6	chr10	-	4417	23	ISM	ENSMUSG00000020231.16	ENSMUST00000036033.14	6322	38	50715	0	-2121	0	3prime_fragment	FALSE	canonical	3	20	junction_17	6.78674571170689	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGCATTTTGAAATGT	NA	False	NA	-14	True	AATAAA	-16	NA	76130379	76098884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_76100708_76101331_76101456_76102150_76102326_76104325_76104401_76105937_76105996_76106229_76106292_76108366_76108538_76108868_76109038_76109982_76110114_76110822_76110933_76112162_76112275_76112417_76112540_76114321_76114446_76115539_76115621_76115690_76115801_76116509_76116712_76118346_76118462_76121359_76121488_76122195_76122277_76123146_76123284_76126841_76126982_76128145_76128261_76130327
ENSMUSG00000020231.16_7	chr10	-	2069	3	ISM	ENSMUSG00000020231.16	ENSMUST00000159486.2	810	6	4133	-1621	-930	0	3prime_fragment	FALSE	canonical	3	28	junction_2	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGCATTTTGAAATGT	8687	False	NA	-14	True	AATAAA	-16	NA	76102272	76098884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_76100708_76101331_76101456_76102150
ENSMUSG00000020232.18_1	chr10	-	1414	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105323.8	1463	10	45	4	8	0	multi-exon	FALSE	canonical	3	169	junction_9	133.860992944542	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTAATATTTGTGG	NA	False	NA	-12	True	AATAAA	-16	NA	81186269	81181885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186240
ENSMUSG00000020232.18_10	chr10	-	1696	9	NIC	ENSMUSG00000020232.18	novel	1463	10	NA	NA	-1	0	intron_retention	FALSE	canonical	3	169	junction_8	141.437044298868	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTAATATTTGTGG	NA	False	NA	-12	True	AATAAA	-16	NA	81186261	81181885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81185323_81185967_81186024_81186240
ENSMUSG00000020232.18_15	chr10	-	1870	8	NIC	ENSMUSG00000020232.18	novel	1321	11	NA	NA	-15	0	intron_retention	FALSE	canonical	3	498	junction_7	43.6834625225518	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTAATATTTGTGG	NA	False	NA	-12	True	AATAAA	-16	NA	81186218	81181885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81185323_81185967
ENSMUSG00000020232.18_2	chr10	-	1516	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105324.9	1540	10	23	1	21	0	multi-exon	FALSE	canonical	3	76	junction_9	161.527966465926	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTAATATTTGTGG	NA	False	NA	-12	True	AATAAA	-16	NA	81186237	81181885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186106
ENSMUSG00000020232.18_22	chr10	-	272	1	ISM	ENSMUSG00000020232.18	ENSMUST00000105323.8	1463	10	4157	4	407	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTAATATTTGTGG	NA	False	NA	-12	True	AATAAA	-16	NA	81182157	81181885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_81181900_81182200
ENSMUSG00000020232.18_5	chr10	-	1240	7	FSM	ENSMUSG00000020232.18	ENSMUST00000132313.2	2501	7	1260	1	-24	0	multi-exon	FALSE	canonical	3	543	junction_2	31.1202863454407	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTAATATTTGTGG	NA	False	NA	-12	True	AATAAA	-16	NA	81184943	81181885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719
ENSMUSG00000020232.18_8	chr10	-	1591	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	29	1	-26	0	multi-exon	FALSE	canonical	3	490	junction_7	50.249222630803	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTAATATTTGTGG	NA	False	NA	-12	True	AATAAA	-16	NA	81186229	81181885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
ENSMUSG00000020235.17_0	chr10	-	2338	14	FSM	ENSMUSG00000020235.17	ENSMUST00000140901.8	3057	14	61	658	-4	218	multi-exon	FALSE	canonical	3	644	junction_9	52.0083061185946	1133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGGGGTCGGTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	81214289	81202713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81203385_81203474_81203568_81203964_81204070_81204356_81204591_81204907_81205093_81205171_81205275_81205804_81205871_81206031_81206216_81206298_81206382_81206530_81206659_81206788_81206853_81206928_81207055_81207178_81207289_81214103
ENSMUSG00000020238.15_1	chr10	-	2876	14	FSM	ENSMUSG00000020238.15	ENSMUST00000020463.14	3118	14	30	212	-20	-4	multi-exon	FALSE	canonical	3	251	junction_4	53.9264236863306	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGAGCCTCCAGGTGTCC	NA	False	NA	-34	True	AATAAA	-14	NA	81332196	81322294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
ENSMUSG00000020238.15_14	chr10	-	2945	13	NIC	ENSMUSG00000020238.15	novel	3118	14	NA	NA	-19	-3	intron_retention	TRUE	canonical	3	345	junction_12	32.4987179234299	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGAGCCTCCAGGTGTCCT	NA	False	NA	-33	True	AATAAA	-15	NA	81332195	81322293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
ENSMUSG00000020238.15_3	chr10	-	2874	14	FSM	ENSMUSG00000020238.15	ENSMUST00000118498.8	2841	14	-36	3	-20	-3	multi-exon	FALSE	canonical	3	153	junction_4	76.7224306246012	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGAGCCTCCAGGTGTCCT	NA	False	NA	-33	True	AATAAA	-15	NA	81332196	81322293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324190_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
ENSMUSG00000020246.14_0	chr10	+	2368	14	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	115	2954	-89	-1921	5prime_fragment	FALSE	canonical	3	69	junction_7	9.81666256450355	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATATGGATTCT	NA	False	NA	13	True	AATAAA	-22	NA	82534955	82575308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
ENSMUSG00000020246.14_16	chr10	+	4088	13	NIC	ENSMUSG00000020246.14	novel	3422	15	NA	NA	-92	-18	intron_retention	FALSE	canonical	0	0	junction_12	25.2729543627614	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTTTACCTCAAGAATT	NA	False	NA	-8	True	AAGAAA	-41	NA	82534952	82577211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574813
ENSMUSG00000020248.19_1	chr10	-	2452	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	21	81	21	-81	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAATCTTGTGTACATCG	NA	False	NA	-14	True	TATAAA	-10	NA	82599957	82584615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ENSMUSG00000020248.19_2	chr10	-	2793	8	NIC	ENSMUSG00000020248.19	novel	2554	8	NA	NA	182	-81	combination_of_known_junctions	FALSE	canonical	3	60	junction_7	291.808505841815	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAATCTTGTGTACATCG	NA	False	NA	-14	True	TATAAA	-10	NA	82599753	82584615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599292
ENSMUSG00000020248.19_3	chr10	-	2375	7	NIC	ENSMUSG00000020248.19	novel	2554	8	NA	NA	11	-37	combination_of_known_junctions	FALSE	canonical	3	46	junction_4	324.615884118788	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTGCTGGGTTGCCAGA	NA	False	NA	30	True	AATAAA	-6	NA	82599967	82584571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82592535_82592630_82597666_82597748_82599837
ENSMUSG00000020248.19_6	chr10	-	2743	7	NIC	ENSMUSG00000020248.19	novel	2554	8	NA	NA	20	-81	intron_retention	FALSE	canonical	3	756	junction_3	68.4505092911822	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAATCTTGTGTACATCG	NA	False	NA	-14	True	TATAAA	-10	NA	82599958	82584615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ENSMUSG00000020250.12_15	chr10	+	3400	15	FSM	ENSMUSG00000020250.12	ENSMUST00000219962.3	2297	15	1	-1104	1	-1	multi-exon	TRUE	canonical	1	267	junction_3	142.059218034492	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGCGTGCCTTCTGACTG	NA	False	NA	12	True	AATAAA	-13	NA	82695041	82733543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_82695135_82696357_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
ENSMUSG00000020250.12_21	chr10	+	3293	14	FSM	ENSMUSG00000020250.12	ENSMUST00000020484.9	3325	14	29	3	1	-1	multi-exon	FALSE	canonical	1	113	junction_1	208.745903123884	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGCGTGCCTTCTGACTG	NA	False	NA	12	True	AATAAA	-13	NA	82695041	82733543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_82695135_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
ENSMUSG00000020250.12_64	chr10	+	3305	14	FSM	ENSMUSG00000020250.12	ENSMUST00000219442.3	3531	14	225	1	21	-1	multi-exon	FALSE	canonical	1	267	junction_2	143.143532881919	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGCGTGCCTTCTGACTG	NA	False	NA	12	True	AATAAA	-13	NA	82696359	82733543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
ENSMUSG00000020250.12_83	chr10	+	1267	1	ISM	ENSMUSG00000020250.12	ENSMUST00000219368.3	3622	15	62492	3	9597	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGCGTGCCTTCTGACTG	NA	False	NA	12	True	AATAAA	-13	NA	82732276	82733543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_82732300_82733500
ENSMUSG00000020253.16_1	chr9	-	1812	10	FSM	ENSMUSG00000020253.16	ENSMUST00000140761.9	1846	10	31	3	31	-3	multi-exon	FALSE	canonical	3	106	junction_7	13.9682178931713	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTCTTTTCTCTCTCTT	3874	False	NA	-7	True	NA	NA	NA	106076443	106072152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106072670_106072985_106073138_106073248_106073357_106073566_106073631_106073791_106073911_106074002_106074088_106074425_106074539_106074940_106075196_106075299_106075424_106076168
ENSMUSG00000020253.16_15	chr9	-	2227	9	NIC	ENSMUSG00000020253.16	novel	1846	10	NA	NA	17	-4	intron_retention	FALSE	canonical	3	111	junction_3	11.9556472012183	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTCTTTTCTCTCTCT	3860	False	NA	-8	True	NA	NA	NA	106076457	106072153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_106072670_106072985_106073138_106073248_106073357_106073566_106073631_106073791_106073911_106074002_106074088_106074425_106075196_106075299_106075424_106076168
ENSMUSG00000020253.16_7	chr9	-	2557	8	NIC	ENSMUSG00000020253.16	novel	1846	10	NA	NA	26	-3	intron_retention	FALSE	canonical	3	111	junction_3	12.0203908388358	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTCTTTTCTCTCTCTT	3869	False	NA	-7	True	NA	NA	NA	106076448	106072152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_106072670_106072985_106073138_106073248_106073357_106073566_106073631_106073791_106073911_106074002_106075196_106075299_106075424_106076168
ENSMUSG00000020255.9_0	chr10	+	3487	4	FSM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	21	119671	21	-119671	multi-exon	FALSE	canonical	3	119	junction_1	5.24933858267454	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAAAGTATTTGGTGGCA	NA	False	NA	16	True	TTTAAA	-5	NA	83196105	83204698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_83196238_83197910_83197998_83200242_83200380_83201567
ENSMUSG00000020255.9_4	chr10	+	2318	1	ISM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	6297	119670	6297	-119670	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGTATTTGGTGGCAC	NA	False	NA	17	True	TTTAAA	-6	NA	83202381	83204699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_83202400_83204700
ENSMUSG00000020255.9_8	chr10	+	3145	1	ISM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	125137	3	125137	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTTTGTGTCAGTAAAG	NA	False	NA	2	True	AATAAA	-11	NA	83321221	83324366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_83321200_83324400
ENSMUSG00000020256.15_0	chr10	-	3491	23	FSM	ENSMUSG00000020256.15	ENSMUST00000020497.14	6027	23	36	2500	-23	-521	multi-exon	FALSE	canonical	3	47	junction_9	8.2773463628096	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCGTGGTCATATTATAC	NA	False	NA	NA	False	AGTAAA	-15	NA	83369968	83325813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_83326499_83328338_83328539_83329292_83329399_83331732_83331899_83333335_83333435_83335702_83335803_83337757_83337852_83338305_83338394_83339805_83339912_83339989_83340061_83342461_83342613_83343878_83344007_83344476_83344597_83348153_83348302_83349446_83349539_83350318_83350445_83351911_83352047_83354207_83354298_83354496_83354599_83356133_83356300_83358565_83358801_83363168_83363314_83369830
ENSMUSG00000020256.15_3	chr10	-	1780	1	ISM	ENSMUSG00000020256.15	ENSMUST00000020497.14	6027	23	44906	5	6783	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAAGTTCTTTTCTCCTTT	1638	False	NA	NA	False	NA	NA	NA	83325098	83323318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_83323300_83325100
ENSMUSG00000020257.14_0	chr9	+	3710	9	FSM	ENSMUSG00000020257.14	ENSMUST00000020490.13	3747	9	2	35	1	-35	multi-exon	FALSE	canonical	3	208	junction_3	24.1958157539687	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCAGTCGTAAACAGGATT	NA	False	NA	19	True	TATAAA	-16	NA	106048128	106068303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_106048579_106053811_106053910_106057764_106057832_106060814_106060915_106061378_106061496_106061881_106062038_106062447_106062518_106063568_106063712_106065794
ENSMUSG00000020257.14_14	chr9	+	2818	4	ISM	ENSMUSG00000020257.14	ENSMUST00000020490.13	3747	9	13815	35	8066	-35	3prime_fragment	FALSE	canonical	3	263	junction_3	2.86744175568088	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCAGTCGTAAACAGGATT	NA	False	NA	19	True	TATAAA	-16	NA	106061941	106068303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_106062038_106062447_106062518_106063568_106063712_106065794
ENSMUSG00000020257.14_17	chr9	+	1832	1	ISM	ENSMUSG00000020257.14	ENSMUST00000020490.13	3747	9	18346	34	12597	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGTCGTAAACAGGATTT	NA	False	NA	20	True	TATAAA	-17	NA	106066472	106068304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_106066500_106068300
ENSMUSG00000020257.14_2	chr9	+	3610	8	NIC	ENSMUSG00000020257.14	novel	3747	9	NA	NA	2	-34	combination_of_known_junctions	FALSE	canonical	3	45	junction_3	76.5447714792874	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGTCGTAAACAGGATTT	NA	False	NA	20	True	TATAAA	-17	NA	106048129	106068304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_106048579_106053811_106053910_106057764_106057832_106061378_106061496_106061881_106062038_106062447_106062518_106063568_106063712_106065794
ENSMUSG00000020258.17_0	chr9	-	4010	5	NNC	ENSMUSG00000020258.17	novel	4081	5	NA	NA	-1987	-2	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_4	3.53553390593274	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATGGCTATATGCACA	3468	False	NA	-17	True	AATAAA	-7	NA	106037324	106030069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_106033307_106033607_106033784_106034343_106034496_106034687_106035104_106037295
ENSMUSG00000020258.17_1	chr9	-	3993	4	FSM	ENSMUSG00000020258.17	ENSMUST00000036382.13	4209	4	212	4	204	-4	multi-exon	FALSE	canonical	2	8	junction_1	3.55902608401044	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGCACATGTGTCTTAC	5687	False	NA	-7	True	AATAAA	-17	NA	106035105	106030059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106033307_106033607_106033784_106034343_106034496_106034687
ENSMUSG00000020258.17_2	chr9	-	2649	1	ISM	ENSMUSG00000020258.17	ENSMUST00000036382.13	4209	4	2609	4	1741	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGCACATGTGTCTTAC	8084	False	NA	-7	True	AATAAA	-17	NA	106032708	106030059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_106030100_106032700
ENSMUSG00000020260.10_0	chr10	+	2197	9	FSM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	87	6	-13	0	multi-exon	FALSE	canonical	3	83	junction_5	28.5938695352693	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGCTGCAGTCCTAGA	NA	False	NA	10	True	AATAAA	-11	NA	77095138	77105403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101669_77101796_77102746_77102928_77103017_77103142_77104360
ENSMUSG00000020260.10_1	chr10	+	377	2	ISM	ENSMUSG00000020260.10	ENSMUST00000217993.2	7010	5	-13	8768	-13	-6165	5prime_fragment	FALSE	canonical	3	179	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTATGAGCAGTTCATTG	NA	False	NA	6	True	AATAAA	-15	NA	77095138	77096635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_77095288_77096407
ENSMUSG00000020260.10_13	chr10	+	1761	1	NIC	ENSMUSG00000020260.10	novel	2290	9	NA	NA	892	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGCTGCAGTCCTAGA	NA	False	NA	10	True	AATAAA	-11	NA	77103642	77105403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_77103600_77105400
ENSMUSG00000020261.16_0	chr11	+	5211	12	NNC	ENSMUSG00000020261.16	novel	1950	12	NA	NA	0	-2	intron_retention	TRUE	canonical	0	0	junction_11	18.7880742902829	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGTTGCAAACTGTGTC	NA	False	NA	22	True	AATAAA	-22	NA	55095187	55127154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_55095315_55104755_55104901_55109833_55109925_55110405_55110495_55111201_55111298_55112822_55112908_55114424_55114644_55115780_55115880_55116791_55116959_55119012_55119183_55123192_55127000_55127038
ENSMUSG00000020261.16_1	chr11	+	2856	11	FSM	ENSMUSG00000020261.16	ENSMUST00000108872.9	5264	11	-7	2415	-7	78	multi-exon	TRUE	canonical	3	47	junction_5	8.1516869419771	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGCCTCTCACAGAGTC	NA	False	NA	NA	False	ACTAAA	-28	NA	55095168	55124741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_55095315_55104755_55104901_55109833_55109925_55110405_55110495_55111201_55111298_55112822_55112908_55114424_55114644_55115780_55115880_55116791_55116959_55119012_55119183_55123192
ENSMUSG00000020261.16_18	chr11	+	2821	1	ISM	ENSMUSG00000020261.16	ENSMUST00000108872.9	5264	11	29152	8	19707	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTGAGAGGTTGCAAAC	390	False	NA	16	True	AATAAA	-16	NA	55124327	55127148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_55124300_55127100
ENSMUSG00000020261.16_23	chr11	+	2182	2	NNC	ENSMUSG00000020261.16	novel	5264	11	NA	NA	20314	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTTGCAAACTGTGTCT	997	False	NA	23	True	AATAAA	-23	NA	55124934	55127155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_55127000_55127038
ENSMUSG00000020261.16_7	chr11	+	4452	12	FSM	ENSMUSG00000020261.16	ENSMUST00000020499.14	1950	12	-18	-2484	-4	-9	multi-exon	FALSE	canonical	2	5	junction_11	17.4895482366087	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTGAGAGGTTGCAAA	NA	False	NA	15	True	AATAAA	-15	NA	55095183	55127147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_55095315_55104755_55104901_55109833_55109925_55110405_55110495_55111201_55111298_55112822_55112908_55114424_55114644_55115780_55115880_55116791_55116959_55119012_55119183_55123192_55123533_55124327
ENSMUSG00000020262.16_0	chr10	-	6513	12	NNC	ENSMUSG00000020262.16	novel	6583	12	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.830104062241	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCTGCATGGACATTTT	NA	False	NA	NA	False	AATAAA	-18	NA	77254103	77126564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_77127050_77127084_77130796_77131531_77131711_77139006_77139189_77146939_77147109_77148211_77148361_77149238_77149408_77153069_77153185_77157482_77158418_77161699_77161775_77195400_77195570_77253928
ENSMUSG00000020262.16_1	chr10	-	1959	1	ISM	ENSMUSG00000020262.16	ENSMUST00000020496.14	6549	11	125579	2	47490	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGCATGGACATTTTCCT	NA	False	NA	NA	False	AATAAA	-21	NA	77128520	77126561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_77126600_77128500
ENSMUSG00000020262.16_13	chr10	-	549	4	FSM	ENSMUSG00000020262.16	ENSMUST00000150227.8	3289	4	-11	2751	-11	-13	multi-exon	FALSE	canonical	3	17	junction_1	14.8398861930347	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAAGAAAACCTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	77254083	77161375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_77161526_77161699_77161775_77195400_77195570_77253928
ENSMUSG00000020262.16_6	chr10	-	2914	11	FSM	ENSMUSG00000020262.16	ENSMUST00000020496.14	6549	11	7	3628	7	-3626	multi-exon	FALSE	canonical	2	18	junction_4	10.2024506859872	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAATAAGAAGTAATTAT	NA	False	NA	NA	False	AATAAA	-30	NA	77254092	77130187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_77130796_77131531_77131711_77139006_77139189_77146939_77147109_77148211_77148361_77149238_77149408_77153069_77153185_77157482_77158418_77161699_77161775_77195400_77195570_77253928
ENSMUSG00000020262.16_8	chr10	-	6080	11	NIC	ENSMUSG00000020262.16	novel	6583	12	NA	NA	2	-3546	intron_retention	FALSE	canonical	2	17	junction_8	10.7893465974544	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGAAAGAGCACGAGAAT	NA	False	NA	NA	False	AATAAA	-10	NA	77254070	77130107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_77130796_77131531_77131711_77139006_77139189_77146939_77147109_77148211_77148361_77149238_77149408_77153069_77153185_77157482_77161526_77161699_77161775_77195400_77195570_77253928
ENSMUSG00000020263.15_1	chr10	-	4491	18	NIC	ENSMUSG00000020263.15	novel	3020	21	NA	NA	-2	-3	intron_retention	FALSE	canonical	3	74	junction_1	12.1629649453978	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGCTTATTGTGGTTAG	NA	False	NA	-3	True	AATAAA	-15	NA	83484531	83435899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_83436906_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
ENSMUSG00000020263.15_17	chr10	-	2737	21	NIC	ENSMUSG00000020263.15	novel	3020	21	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	21.7591360122593	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTGCTTATTGTGGTT	NA	False	NA	-5	True	AATAAA	-13	NA	83484538	83435901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_83436692_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83446931_83447006_83447064_83447313_83447357_83448575_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
ENSMUSG00000020263.15_3	chr10	-	2953	21	FSM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	62	5	-1	-5	multi-exon	FALSE	canonical	3	74	junction_1	12.9324205004322	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTGCTTATTGTGGTT	NA	False	NA	-5	True	AATAAA	-13	NA	83484540	83435901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_83436906_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83446931_83447006_83447064_83447313_83447357_83448575_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
ENSMUSG00000020263.15_6	chr10	-	4160	20	NIC	ENSMUSG00000020263.15	novel	3020	21	NA	NA	3	-3	intron_retention	FALSE	canonical	3	74	junction_1	12.6836645438291	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGCTTATTGTGGTTAG	NA	False	NA	-3	True	AATAAA	-15	NA	83484526	83435899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_83436906_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83446931_83447006_83447064_83447313_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
ENSMUSG00000020264.6_0	chr11	-	2351	10	FSM	ENSMUSG00000020264.6	ENSMUST00000039305.6	2429	10	54	24	54	-24	multi-exon	FALSE	canonical	0	0	junction_1	0.628539361054709	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTCGATGATGGCTTCC	2283	False	NA	NA	False	AGTAAA	-14	NA	55075849	55049319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_55050442_55053471_55053642_55055058_55055226_55059655_55059755_55060679_55060899_55065493_55065579_55070150_55070247_55071532_55071622_55072370_55072462_55075636
ENSMUSG00000020264.6_1	chr11	-	1165	2	ISM	ENSMUSG00000020264.6	ENSMUST00000039305.6	2429	10	22396	17	22396	-17	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATGGCTTCCACCCTGA	NA	False	NA	NA	False	AGTAAA	-21	NA	55053507	55049312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_55050442_55053471
ENSMUSG00000020265.17_0	chr10	+	1686	5	FSM	ENSMUSG00000020265.17	ENSMUST00000137841.9	1005	5	25	-706	9	-6	multi-exon	FALSE	canonical	3	61	junction_3	668.550858200033	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTCTCTTGGCCTATG	NA	False	NA	19	True	AGTAAA	-12	NA	77442067	77453250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451760_77451869_77451981
ENSMUSG00000020265.17_1	chr10	+	1578	4	FSM	ENSMUSG00000020265.17	ENSMUST00000020501.15	2630	4	137	915	9	-6	multi-exon	FALSE	canonical	3	1171	junction_3	110.14031454871	1018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTCTCTTGGCCTATG	NA	False	NA	19	True	AGTAAA	-12	NA	77442067	77453250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451981
ENSMUSG00000020265.17_13	chr10	+	1837	4	FSM	ENSMUSG00000020265.17	ENSMUST00000099538.6	1874	4	31	6	31	-6	multi-exon	FALSE	canonical	3	41	junction_1	598.245397437837	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTCTCTTGGCCTATG	NA	False	NA	19	True	AGTAAA	-12	NA	77442435	77453250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77442803_77445645_77445775_77449813_77449886_77451981
ENSMUSG00000020267.7_0	chr11	+	563	3	FSM	ENSMUSG00000020267.7	ENSMUST00000020504.6	636	3	63	10	-35	-10	multi-exon	FALSE	canonical	3	4351	junction_2	227.5	888	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTATGAGTGGATTTGT	NA	False	NA	24	True	AATAAA	-13	NA	54757271	54761317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_54757427_54760673_54760779_54761014
ENSMUSG00000020268.15_0	chr11	-	1943	1	ISM	ENSMUSG00000020268.15	ENSMUST00000144164.9	3431	5	20349	262	9923	-262	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAACAGGTGAAGAATAAC	NA	False	NA	NA	False	NA	NA	NA	54731389	54729446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_54729400_54731400
ENSMUSG00000020268.15_11	chr11	-	3325	4	NIC	ENSMUSG00000020268.15	novel	2389	5	NA	NA	1	-11	intron_retention	FALSE	canonical	3	120	junction_3	26.1661358757205	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACTCAACTACAGAGAAG	NA	False	NA	-13	True	AATAAA	-16	NA	54751413	54730649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_54732029_54739404_54741242_54744052_54744126_54751377
ENSMUSG00000020268.15_2	chr11	-	1639	5	FSM	ENSMUSG00000020268.15	ENSMUST00000144164.9	3431	5	323	1469	-1	-15	multi-exon	FALSE	canonical	3	120	junction_4	23.1557228347551	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAGCAACTCAACTACAGA	NA	False	NA	-17	True	AATAAA	-12	NA	54751415	54730653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_54732029_54739404_54739487_54741170_54741242_54744052_54744126_54751377
ENSMUSG00000020268.15_5	chr11	-	1611	4	ISM	ENSMUSG00000020268.15	ENSMUST00000144164.9	3431	5	7614	1458	-2812	-4	3prime_fragment	FALSE	canonical	3	149	junction_3	14.4452991200136	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTACAGAGAAGTGATTTC	NA	False	NA	-6	True	AATAAA	-23	NA	54744124	54730642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_54732029_54739404_54739487_54741170_54741242_54744052
ENSMUSG00000020268.15_8	chr11	-	1644	5	NIC	ENSMUSG00000020268.15	novel	3431	5	NA	NA	-3	-9	combination_of_known_splicesites	FALSE	canonical	3	20	junction_3	62.9503772824278	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTCAACTACAGAGAAGTG	NA	False	NA	-11	True	AATAAA	-18	NA	54751417	54730647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_54732029_54739404_54739487_54741170_54741239_54744052_54744126_54751377
ENSMUSG00000020271.18_0	chr11	+	3864	12	NIC	ENSMUSG00000020271.18	novel	3938	13	NA	NA	-29	-83	combination_of_known_splicesites	FALSE	canonical	3	198	junction_1	77.7587921206735	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACACCTGACCTGGCTTC	NA	False	NA	28	True	AATAAA	-40	NA	32592754	32696706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_32592936_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
ENSMUSG00000020271.18_1	chr11	+	3922	13	FSM	ENSMUSG00000020271.18	ENSMUST00000109366.8	3821	13	32	-133	-28	-87	multi-exon	FALSE	canonical	3	196	junction_1	93.3590738314529	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGTACACCTGACCTGG	NA	False	NA	24	True	AATAAA	-36	NA	32592755	32696702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_32592936_32658187_32658251_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
ENSMUSG00000020271.18_4	chr11	+	4060	14	NIC	ENSMUSG00000020271.18	novel	4019	14	NA	NA	-25	-103	combination_of_known_splicesites	FALSE	canonical	3	66	junction_2	141.20424587545	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAAGATGAGTATTATGC	NA	False	NA	8	True	AATAAA	-20	NA	32592758	32696686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_32592936_32602747_32602905_32658187_32658251_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
ENSMUSG00000020271.18_62	chr11	+	1783	1	ISM	ENSMUSG00000020271.18	ENSMUST00000093205.13	3938	13	102058	83	102020	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACACCTGACCTGGCTTC	NA	False	NA	28	True	AATAAA	-40	NA	32694923	32696706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_32694900_32696700
ENSMUSG00000020271.18_8	chr11	+	4007	13	NIC	ENSMUSG00000020271.18	novel	3938	13	NA	NA	-26	-94	combination_of_known_splicesites	FALSE	canonical	3	40	junction_2	145.006225919978	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTATTATGCAGTACACCT	NA	False	NA	17	True	AATAAA	-29	NA	32592757	32696695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_32592936_32602747_32602905_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
ENSMUSG00000020271.18_9	chr11	+	3986	14	FSM	ENSMUSG00000020271.18	ENSMUST00000076383.8	4019	14	-121	154	-30	93	multi-exon	FALSE	canonical	3	19	junction_2	161.467713445156	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTGCTAAGTAATGTC	NA	False	NA	-16	True	AATAAA	-24	NA	32592753	32696662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_32592936_32630200_32630303_32658187_32658251_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
ENSMUSG00000020272.9_0	chr11	+	5037	19	FSM	ENSMUSG00000020272.9	ENSMUST00000102821.4	5026	19	-7	-4	-7	4	multi-exon	TRUE	canonical	3	12	junction_8	17.3190824607989	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCACTGTTGTTCTTTC	NA	False	NA	5	True	AATAAA	-16	NA	32483297	32574591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_32483560_32505123_32505289_32524498_32524548_32527623_32527774_32537312_32537386_32538755_32538951_32539409_32539492_32546614_32546750_32548438_32548985_32550740_32550872_32553666_32553791_32554120_32554301_32560632_32560726_32562670_32562801_32563461_32563587_32564524_32564714_32565780_32565907_32567848_32567963_32572423
ENSMUSG00000020272.9_11	chr11	+	2409	3	ISM	ENSMUSG00000020272.9	ENSMUST00000102821.4	5026	19	82475	-4	27185	4	3prime_fragment	FALSE	canonical	3	65	junction_2	7	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCACTGTTGTTCTTTC	2710	False	NA	5	True	AATAAA	-16	NA	32565779	32574591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_32565907_32567848_32567963_32572423
ENSMUSG00000020272.9_12	chr11	+	2203	2	ISM	ENSMUSG00000020272.9	ENSMUST00000102821.4	5026	19	84625	-6	29335	6	3prime_fragment	FALSE	canonical	3	65	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACTGTTGTTCTTTCTG	4860	False	NA	7	True	AATAAA	-18	NA	32567929	32574593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_32567963_32572423
ENSMUSG00000020272.9_13	chr11	+	1334	1	ISM	ENSMUSG00000020272.9	ENSMUST00000102821.4	5026	19	89943	6	34653	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGATTTGCAAGCACTG	NA	False	NA	-5	True	AATAAA	-6	NA	32573247	32574581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_32573200_32574600
ENSMUSG00000020272.9_7	chr11	+	2445	4	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	26181	6	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	21.9696760710454	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACTGTTGTTCTTTCTG	1706	False	NA	7	True	AATAAA	-18	NA	32564775	32574593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_32564811_32565780_32565907_32567848_32567963_32572423
ENSMUSG00000020272.9_9	chr11	+	2511	4	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	26189	6	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	27.0102861065105	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACTGTTGTTCTTTCTG	1714	False	NA	7	True	AATAAA	-18	NA	32564783	32574593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_32564885_32565780_32565907_32567848_32567963_32572423
ENSMUSG00000020273.14_0	chr11	-	3736	22	FSM	ENSMUSG00000020273.14	ENSMUST00000020513.10	3747	22	9	2	-8	-2	multi-exon	FALSE	canonical	3	117	junction_1	18.5612914946701	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTTTAATTTT	1278	False	NA	-3	True	TTTAAA	-6	NA	23845244	23812647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_23814057_23816410_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
ENSMUSG00000020275.10_0	chr11	-	976	1	ISM	ENSMUSG00000020275.10	ENSMUST00000102864.5	7466	10	33143	5	33143	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGCTTGTTACAGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	23687827	23686851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_23686900_23687800
ENSMUSG00000020275.10_1	chr11	-	7485	10	FSM	ENSMUSG00000020275.10	ENSMUST00000102864.5	7466	10	-25	6	-25	-6	multi-exon	FALSE	canonical	0	0	junction_6	1.22726233524303	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATGCTTGTTACAGTT	NA	False	NA	NA	False	AATAAA	-13	NA	23720995	23686852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_23693041_23694238_23694308_23694436_23694506_23695428_23695642_23695745_23695851_23698750_23698892_23703216_23703309_23706898_23707048_23711012_23711156_23720679
ENSMUSG00000020277.11_1	chr10	-	2711	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	59	960	-12	-960	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	2281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGGTCACTGGGACAAC	NA	False	NA	-31	True	AATAAA	-14	NA	77845582	77823740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
ENSMUSG00000020280.13_1	chr11	+	3345	18	FSM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	207	7	26	-7	multi-exon	FALSE	canonical	3	91	junction_1	15.9356404539699	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCTTTGAGCATTGTT	NA	False	NA	3	True	ATTAAA	-10	NA	23616213	23682869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
ENSMUSG00000020280.13_18	chr11	+	3103	17	ISM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	1269	11	765	-11	3prime_fragment	FALSE	canonical	3	92	junction_7	14.5965267700916	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAAAGTCTTTGAGCAT	NA	False	NA	-1	True	ATTAAA	-6	NA	23617275	23682865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
ENSMUSG00000020280.13_26	chr11	+	3832	7	ISM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	49823	7	-1652	-7	3prime_fragment	FALSE	canonical	3	114	junction_5	9.88264472024906	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCTTTGAGCATTGTT	210	False	NA	3	True	ATTAAA	-10	NA	23665829	23682869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
ENSMUSG00000020280.13_4	chr11	+	3252	18	NIC	ENSMUSG00000020280.13	novel	3559	18	NA	NA	109	-7	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	26.8721180155863	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCTTTGAGCATTGTT	NA	False	NA	3	True	ATTAAA	-10	NA	23616296	23682869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_23616454_23617287_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
ENSMUSG00000020282.19_25	chr11	-	2978	17	NIC	ENSMUSG00000020282.19	novel	2946	18	NA	NA	-2	0	intron_retention	FALSE	canonical	0	0	junction_2	19.6666556320591	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGGATTTGTCACTGTTT	NA	False	NA	-3	True	AATAAA	-34	NA	32172261	32159585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_32160224_32160397_32160552_32160657_32160759_32160826_32160903_32161110_32161206_32161581_32161646_32161919_32162021_32162622_32162785_32162867_32162943_32163051_32163164_32163259_32163518_32163951_32164305_32164392_32164603_32164909_32165124_32165933_32166065_32166141_32166283_32172168
ENSMUSG00000020282.19_28	chr11	-	2982	18	NIC	ENSMUSG00000020282.19	novel	2946	18	NA	NA	6	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	24.236436295187	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATGAGGATTTGTCACTGT	NA	False	NA	-5	True	AATAAA	-32	NA	32172274	32159587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_32160224_32160397_32160552_32160657_32160759_32160826_32160903_32161110_32161206_32161581_32161646_32161919_32162021_32162622_32162785_32162867_32162943_32163051_32163164_32163259_32163518_32163951_32164110_32164181_32164305_32164392_32164603_32164909_32165124_32165933_32166065_32166141_32166348_32172168
ENSMUSG00000020282.19_6	chr11	-	2924	18	FSM	ENSMUSG00000020282.19	ENSMUST00000020524.15	2946	18	21	1	1	0	multi-exon	TRUE	canonical	0	0	junction_2	19.5534933028863	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGGATTTGTCACTGTTT	NA	False	NA	-3	True	AATAAA	-34	NA	32172279	32159585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_32160224_32160397_32160552_32160657_32160759_32160826_32160903_32161110_32161206_32161581_32161646_32161919_32162021_32162622_32162785_32162867_32162943_32163051_32163164_32163259_32163518_32163951_32164110_32164181_32164305_32164392_32164603_32164909_32165124_32165933_32166065_32166141_32166283_32172168
ENSMUSG00000020283.6_0	chr11	-	1711	4	FSM	ENSMUSG00000020283.6	ENSMUST00000020523.4	4146	4	91	2344	-16	633	multi-exon	FALSE	canonical	3	429	junction_1	13.1993265821489	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGTCCAGTGTTGAATT	NA	False	NA	-4	True	AATAAA	-28	NA	23615868	23598822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_23599591_23600929_23601056_23605435_23606131_23615746
ENSMUSG00000020283.6_3	chr11	-	1385	3	ISM	ENSMUSG00000020283.6	ENSMUST00000020523.4	4146	4	10033	2344	9747	633	3prime_fragment	FALSE	canonical	3	429	junction_1	16	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGTCCAGTGTTGAATT	NA	False	NA	-4	True	AATAAA	-28	NA	23605926	23598822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_23599591_23600929_23601056_23605435
ENSMUSG00000020284.17_0	chr10	+	3435	5	NIC	ENSMUSG00000020284.17	novel	2238	6	NA	NA	-44	1	intron_retention	FALSE	canonical	3	54	junction_2	1.80277563773199	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGTCCCAGGCCCACT	NA	False	NA	15	True	AATAAA	-15	NA	77814443	77821271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
ENSMUSG00000020284.17_1	chr10	+	1698	7	FSM	ENSMUSG00000020284.17	ENSMUST00000105397.10	1818	7	120	0	-10	0	multi-exon	FALSE	canonical	3	54	junction_4	1.5723301886761	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGTGTCCCAGGCCC	NA	False	NA	12	True	AATAAA	-12	NA	77814477	77821268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77814616_77815586_77815606_77816334_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
ENSMUSG00000020284.17_3	chr10	+	2448	6	FSM	ENSMUSG00000020284.17	ENSMUST00000149074.8	2238	6	-34	-176	-34	-3	multi-exon	FALSE	canonical	3	54	junction_3	1.62480768092719	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTCTGTGTCCCAGG	NA	False	NA	9	True	AATAAA	-9	NA	77814453	77821265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77814616_77815586_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
ENSMUSG00000020284.17_6	chr10	+	1082	6	NIC	ENSMUSG00000020284.17	novel	1818	7	NA	NA	-8	360	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	21.8595516879921	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTGAGGTTCATGTTGTT	NA	False	NA	41	True	NA	NA	NA	77814479	77820673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_77814616_77816334_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
ENSMUSG00000020287.16_0	chr11	+	2089	3	NIC	ENSMUSG00000020287.16	novel	1737	4	NA	NA	6	2	intron_retention	FALSE	canonical	3	350	junction_1	6	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGTCTCAGCCAGAATT	NA	False	NA	27	True	AATAAA	-24	NA	32176516	32182024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_32177950_32179848_32180054_32181573
ENSMUSG00000020287.16_1	chr11	+	1052	4	FSM	ENSMUSG00000020287.16	ENSMUST00000020528.14	1737	4	9	676	9	2	multi-exon	FALSE	canonical	3	333	junction_1	11.8977121983832	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGTCTCAGCCAGAATT	NA	False	NA	27	True	AATAAA	-24	NA	32176519	32182024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_32176718_32177751_32177950_32179848_32180054_32181573
ENSMUSG00000020287.16_12	chr11	+	4651	1	NIC	ENSMUSG00000020287.16	novel	1737	4	NA	NA	835	2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGTCTCAGCCAGAATT	NA	False	NA	27	True	AATAAA	-24	NA	32177373	32182024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_32177400_32182000
ENSMUSG00000020288.14_0	chr11	-	1748	9	FSM	ENSMUSG00000020288.14	ENSMUST00000020529.13	3023	9	82	1193	-18	-157	multi-exon	TRUE	canonical	3	225	junction_2	27.6394193137265	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACATCAAGTGTGCTTTA	NA	False	NA	-8	True	AATAAA	-16	NA	23447948	23439739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446882_23447774
ENSMUSG00000020288.14_11	chr11	-	1420	9	FSM	ENSMUSG00000020288.14	ENSMUST00000109539.8	3583	9	-25	2188	-25	251	multi-exon	FALSE	canonical	3	33	junction_8	76.5816557669002	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTCTAAGCCAGTTTCC	NA	False	NA	-13	True	AATAAA	-20	NA	23447955	23440069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446877_23447774
ENSMUSG00000020288.14_14	chr11	-	3623	7	NIC	ENSMUSG00000020288.14	novel	3023	9	NA	NA	-16	7	intron_retention	FALSE	canonical	3	225	junction_2	24.7655674946756	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACCGCCCAGAATGCTT	NA	False	NA	-11	True	AATAAA	-13	NA	23447946	23440419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23445065_23446690_23446882_23447774
ENSMUSG00000020288.14_5	chr11	-	2698	8	NIC	ENSMUSG00000020288.14	novel	3023	9	NA	NA	1	-160	intron_retention	FALSE	canonical	3	225	junction_2	28.0145734668692	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTACATCAAGTGTGCT	NA	False	NA	-11	True	AATAAA	-13	NA	23447929	23439742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23443394_23444978_23445065_23446690_23446882_23447774
ENSMUSG00000020289.16_0	chr11	-	2085	13	FSM	ENSMUSG00000020289.16	ENSMUST00000020530.12	2865	13	73	707	-5	265	multi-exon	TRUE	canonical	3	148	junction_6	11.6770786871831	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTGTGTATGTGT	4640	False	NA	-4	True	AATATA	-14	NA	32217634	32182669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_32183117_32183903_32184097_32184731_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024_32213095_32217422
ENSMUSG00000020289.16_4	chr11	-	2721	12	NIC	ENSMUSG00000020289.16	novel	2865	13	NA	NA	-6	265	intron_retention	FALSE	canonical	3	148	junction_5	12.1960568075461	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTGTGTATGTGT	4639	False	NA	-4	True	AATATA	-14	NA	32217635	32182669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_32183117_32183903_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024_32213095_32217422
ENSMUSG00000020290.15_5	chr11	+	4207	25	FSM	ENSMUSG00000020290.15	ENSMUST00000102869.8	6004	25	-35	1832	2	184	multi-exon	FALSE	canonical	2	1142	junction_7	252.998761388053	3243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTGTAAATTCTAATACAA	NA	False	NA	-34	True	AGTAAA	-17	NA	23206042	23246417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
ENSMUSG00000020297.11_1	chr11	+	2294	5	FSM	ENSMUSG00000020297.11	ENSMUST00000020537.9	2239	5	-59	4	-59	-4	multi-exon	FALSE	canonical	1	5	junction_2	2.06155281280883	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCCTGACTGTCTGT	NA	False	NA	17	True	AATAAA	-13	NA	31950403	32009198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_31950597_31951730_31951881_31967650_31967735_32005012_32005124_32007442
ENSMUSG00000020297.11_3	chr11	+	1456	1	ISM	ENSMUSG00000020297.11	ENSMUST00000020537.9	2239	5	57280	4	57241	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCCTGACTGTCTGT	5895	False	NA	17	True	AATAAA	-13	NA	32007742	32009198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_32007700_32009200
ENSMUSG00000020299.7_0	chr11	+	1435	5	FSM	ENSMUSG00000020299.7	ENSMUST00000102829.4	2000	5	-2	567	-2	-567	multi-exon	FALSE	canonical	3	12	junction_4	0.707106781186548	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATACAATGTGAATTTC	2282	False	NA	NA	False	AATATA	-18	NA	31915589	31929084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_31915952_31923555_31923642_31925036_31925136_31926785_31926831_31928241
ENSMUSG00000020300.15_0	chr11	+	7576	8	NIC	ENSMUSG00000020300.15	novel	6303	9	NA	NA	-1289	-7	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	6.8332918532008	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAGATTTCTTTTACTA	NA	False	NA	-4	True	AATAAA	-7	NA	31820921	31885627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_31823413_31839857_31839940_31870408_31870583_31874625_31874716_31875348_31875468_31877640_31877756_31880037_31880220_31881304
ENSMUSG00000020300.15_1	chr11	+	6739	9	FSM	ENSMUSG00000020300.15	ENSMUST00000155278.2	5281	9	-1460	2	-396	-2	multi-exon	FALSE	canonical	2	5	junction_3	10.3802697460133	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTCTTTTACTATACTT	NA	False	NA	1	True	AATAAA	-12	NA	31821814	31885632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_31823413_31839857_31839940_31858824_31858876_31870408_31870583_31874625_31874716_31875348_31875468_31877640_31877756_31880037_31880220_31881304
ENSMUSG00000020300.15_2	chr11	+	4957	6	ISM	ENSMUSG00000020300.15	ENSMUST00000155278.2	5281	9	47186	1	47186	-1	3prime_fragment	FALSE	canonical	3	21	junction_3	6.85273667960473	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTCTTTTACTATACTTA	NA	False	NA	2	True	AATAAA	-13	NA	31870460	31885633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_31870583_31874625_31874716_31875348_31875468_31877640_31877756_31880037_31880220_31881304
ENSMUSG00000020300.15_5	chr11	+	4508	2	ISM	ENSMUSG00000020300.15	ENSMUST00000155278.2	5281	9	56765	2	56765	-2	3prime_fragment	FALSE	canonical	3	37	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTCTTTTACTATACTT	5707	False	NA	1	True	AATAAA	-12	NA	31880039	31885632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_31880220_31881304
ENSMUSG00000020300.15_6	chr11	+	3008	1	ISM	ENSMUSG00000020300.15	ENSMUST00000109412.9	6303	9	60399	2	59350	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTCTTTTACTATACTT	71	False	NA	1	True	AATAAA	-12	NA	31882624	31885632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_31882600_31885600
ENSMUSG00000020303.3_0	chr11	-	5020	3	ISM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	167	596	140	83	intron_retention	FALSE	canonical	3	131	junction_2	15.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCTTTTCATGGCTCCTT	NA	False	NA	-30	True	AGTAAA	-11	NA	31319907	31307902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_31310529_31315331_31315544_31317725
ENSMUSG00000020303.3_1	chr11	-	3326	4	FSM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	2	612	2	67	multi-exon	FALSE	canonical	3	131	junction_2	14.613540144522	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTAAAAAATATATATATAT	NA	False	NA	-46	True	NA	NA	NA	31320072	31307918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_31310529_31315331_31315544_31317725_31317869_31319711
ENSMUSG00000020303.3_4	chr11	-	2162	1	ISM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	10014	592	8106	87	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCATGGCTCCTTGTGT	NA	False	NA	-26	True	AGTAAA	-15	NA	31310060	31307898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_31307900_31310100
ENSMUSG00000020305.14_1	chr11	+	1946	10	FSM	ENSMUSG00000020305.14	ENSMUST00000020551.13	3228	10	48	1234	-5	137	multi-exon	FALSE	canonical	3	71	junction_7	7.49979423586054	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGTGCTGGATGTGACT	NA	False	NA	12	True	AATAAA	-12	NA	30904442	31051470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_30904570_30948312_30948522_30978907_30979067_31005457_31005571_31006101_31006238_31008821_31009000_31011388_31011587_31031361_31031623_31035000_31035132_31051036
ENSMUSG00000020305.14_11	chr11	+	6626	3	ISM	ENSMUSG00000020305.14	ENSMUST00000137306.8	3330	11	121155	1235	16966	136	3prime_fragment	FALSE	canonical	3	77	junction_1	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTGCTGGATGTGAC	NA	False	NA	11	True	AATAAA	-11	NA	31025560	31051469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_31031623_31035000_31035132_31051036
ENSMUSG00000020305.14_6	chr11	+	1766	9	NIC	ENSMUSG00000020305.14	novel	3228	10	NA	NA	16	137	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	28.9047465825252	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGTGCTGGATGTGACT	NA	False	NA	12	True	AATAAA	-12	NA	30904463	31051470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_30904570_30948312_30948522_31005457_31005571_31006101_31006238_31008821_31009000_31011388_31011587_31031361_31031623_31035000_31035132_31051036
ENSMUSG00000020307.16_0	chr10	+	1245	5	FSM	ENSMUSG00000020307.16	ENSMUST00000218964.2	979	5	-266	0	13	0	multi-exon	FALSE	canonical	3	168	junction_4	778.055749930556	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCTGAGAGAATCACCT	NA	False	NA	17	True	AATAAA	-17	NA	79518041	79524228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523686
ENSMUSG00000020307.16_2	chr10	+	1249	5	FSM	ENSMUSG00000020307.16	ENSMUST00000020550.13	1266	5	13	4	13	0	multi-exon	FALSE	canonical	3	1645	junction_4	163.290194133022	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCTGAGAGAATCACCT	NA	False	NA	17	True	AATAAA	-17	NA	79518041	79524228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
ENSMUSG00000020308.8_0	chr10	+	1071	2	FSM	ENSMUSG00000020308.8	ENSMUST00000239401.2	1101	2	29	1	29	-1	multi-exon	FALSE	canonical	3	316	junction_1	0	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCCTTGCTGGTCACC	8035	False	NA	9	True	AATAAA	-11	NA	79505272	79511959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79505618_79511233
ENSMUSG00000020308.8_3	chr10	+	945	2	FSM	ENSMUSG00000020308.8	ENSMUST00000220175.2	278	2	4	-671	4	-7	multi-exon	FALSE	canonical	3	13	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACGACTCTGCCTTGCTG	8513	False	NA	3	True	AATAAA	-5	NA	79505750	79511953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79505976_79511233
ENSMUSG00000020309.7_0	chr11	-	1285	3	FSM	ENSMUSG00000020309.7	ENSMUST00000101394.5	1315	3	8	22	8	-22	multi-exon	FALSE	canonical	3	30	junction_1	6	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAGATTTTACAATTAT	NA	False	NA	NA	False	AATAAA	-41	NA	30936342	30926728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_30927747_30929564_30929601_30936111
ENSMUSG00000020309.7_1	chr11	-	235	1	ISM	ENSMUSG00000020309.7	ENSMUST00000101394.5	1315	3	9405	4	9389	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTTCTCTAAGTGTCAT	NA	False	NA	NA	False	AATAAA	-29	NA	30926945	30926710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_30926700_30926900
ENSMUSG00000020309.7_2	chr11	-	1256	2	FSM	ENSMUSG00000020309.7	ENSMUST00000020553.5	1018	2	-15	-223	1	-22	multi-exon	FALSE	canonical	3	22	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAGATTTTACAATTAT	NA	False	NA	NA	False	AATAAA	-41	NA	30936349	30926728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_30927747_30936111
ENSMUSG00000020310.10_0	chr10	+	1399	5	FSM	ENSMUSG00000020310.10	ENSMUST00000020554.8	1436	5	36	1	8	-1	multi-exon	FALSE	canonical	2	3	junction_4	3.08220700148449	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACTGGCATATTCTTTC	3191	False	NA	NA	False	AATAAA	-13	NA	79500428	79504370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79500502_79500745_79501013_79501264_79501592_79502172_79502605_79504070
ENSMUSG00000020311.18_11	chr11	-	3749	3	NIC	ENSMUSG00000020311.18	novel	977	9	NA	NA	7904	-11	intron_retention	FALSE	canonical	3	96	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAGAAAGATGATTGA	NA	False	NA	-44	True	ATTAAA	-15	NA	30890181	30881761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_30884748_30884981_30885060_30889496
ENSMUSG00000020311.18_5	chr11	-	1883	14	FSM	ENSMUSG00000020311.18	ENSMUST00000073192.14	2532	14	-182	831	1	146	multi-exon	FALSE	canonical	2	57	junction_8	15.3746121325012	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCCTTGTCTCACTTCAT	NA	False	NA	-18	True	GATAAA	-11	NA	30904334	30881604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_30881849_30884671_30884748_30884981_30885060_30889496_30889622_30893038_30893099_30893698_30893861_30898078_30898209_30898299_30898524_30899942_30899978_30900559_30900624_30900740_30900819_30901306_30901388_30902571_30902677_30903913
ENSMUSG00000020311.18_9	chr11	-	1639	13	NIC	ENSMUSG00000020311.18	novel	2532	14	NA	NA	27	146	combination_of_known_splicesites	TRUE	canonical	0	0	junction_8	27.4008312931479	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCCTTGTCTCACTTCAT	NA	False	NA	-18	True	GATAAA	-11	NA	30904125	30881604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_30881849_30884671_30884748_30884981_30885060_30889496_30889622_30893038_30893099_30893698_30893861_30898078_30898209_30898299_30898524_30900559_30900624_30900740_30900819_30901306_30901388_30902571_30902677_30903913
ENSMUSG00000020312.13_0	chr10	-	3901	13	FSM	ENSMUSG00000020312.13	ENSMUST00000020564.7	3243	13	31	-689	31	88	multi-exon	FALSE	canonical	3	15	junction_3	3.42681419915868	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	79473721	79453796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79455934_79456887_79457022_79458088_79458400_79459660_79459826_79461926_79461991_79462088_79462255_79462633_79462761_79462853_79462906_79463028_79463083_79465656_79465777_79465901_79465963_79467098_79467170_79473282
ENSMUSG00000020312.13_9	chr10	-	4316	12	NIC	ENSMUSG00000020312.13	novel	3243	13	NA	NA	52	-136	intron_retention	FALSE	canonical	3	18	junction_9	2.71207888912296	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAACGTGTAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	79473700	79454621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79455934_79456887_79457022_79458088_79459826_79461926_79461991_79462088_79462255_79462633_79462761_79462853_79462906_79463028_79463083_79465656_79465777_79465901_79465963_79467098_79467170_79473282
ENSMUSG00000020315.19_0	chr11	-	8559	35	NIC	ENSMUSG00000020315.19	novel	8238	35	NA	NA	13	-6	combination_of_known_junctions	FALSE	canonical	3	341	junction_32	94.310427564532	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTAGCCTATGACTAGC	1833	False	NA	-14	True	ATTAAA	-8	NA	30148244	30049401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529_30070812_30070975_30071066_30071475_30071701_30073798_30074063_30074865_30075013_30079569_30079661_30085939_30086143_30086873_30087631_30088363_30088502_30088591_30089463_30090470_30090625_30092119_30092423_30093018_30093178_30094105_30094224_30095828_30096017_30096738_30096852_30099499_30099616_30099929_30100011_30101555_30101648_30104228_30104403_30109293_30109446_30147723
ENSMUSG00000020315.19_1	chr11	-	3768	16	ISM	ENSMUSG00000020315.19	ENSMUST00000011877.13	8238	35	98226	1	-10187	-1	3prime_fragment	FALSE	canonical	3	421	junction_15	75.9286214517	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTATGACTAGCCGGTG	7368	False	NA	-9	True	ATTAAA	-13	NA	30071546	30049396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529_30070812_30070975_30071066_30071475
ENSMUSG00000020315.19_14	chr11	-	5050	21	ISM	ENSMUSG00000020315.19	ENSMUST00000011877.13	8238	35	82476	1	-25937	-1	3prime_fragment	FALSE	canonical	3	357	junction_17	82.5287222729154	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTATGACTAGCCGGTG	NA	False	NA	-9	True	ATTAAA	-13	NA	30087296	30049396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529_30070812_30070975_30071066_30071475_30071701_30073798_30074063_30074865_30075013_30079569_30079661_30085939_30086143_30086873
ENSMUSG00000020315.19_17	chr11	-	3464	14	ISM	ENSMUSG00000020315.19	ENSMUST00000011877.13	8238	35	99099	6	-9314	-6	3prime_fragment	FALSE	canonical	3	489	junction_6	68.124755034574	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTAGCCTATGACTAGC	8241	False	NA	-14	True	ATTAAA	-8	NA	30070673	30049401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529
ENSMUSG00000020315.19_18	chr11	-	5978	23	ISM	ENSMUSG00000020315.19	ENSMUST00000011877.13	8238	35	80723	3	-27690	-3	3prime_fragment	FALSE	canonical	3	357	junction_17	84.4863551993814	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCTATGACTAGCCGG	NA	False	NA	-11	True	ATTAAA	-11	NA	30089049	30049398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529_30070812_30070975_30071066_30071475_30071701_30073798_30074063_30074865_30075013_30079569_30079661_30085939_30086143_30086873_30087631_30088363_30088502_30088591
ENSMUSG00000020315.19_2	chr11	-	2841	11	ISM	ENSMUSG00000020315.19	ENSMUST00000011877.13	8238	35	101905	6	-6508	-6	3prime_fragment	FALSE	canonical	3	489	junction_6	75.6039681498266	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTAGCCTATGACTAGC	NA	False	NA	-14	True	ATTAAA	-8	NA	30067867	30049401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635
ENSMUSG00000020315.19_30	chr11	-	3066	12	ISM	ENSMUSG00000020315.19	ENSMUST00000011877.13	8238	35	101405	1	-7008	-1	3prime_fragment	FALSE	canonical	3	489	junction_6	72.7146579968806	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTATGACTAGCCGGTG	NA	False	NA	-9	True	ATTAAA	-13	NA	30068367	30049396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290
ENSMUSG00000020315.19_4	chr11	-	8461	36	FSM	ENSMUSG00000020315.19	ENSMUST00000006629.14	8461	36	-7	7	-1	-6	multi-exon	FALSE	canonical	3	15	junction_35	139.777607619521	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTAGCCTATGACTAGC	1512	False	NA	-14	True	ATTAAA	-8	NA	30218176	30049401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529_30070812_30070975_30071066_30071475_30071701_30073798_30074063_30074865_30075013_30079569_30079661_30085939_30086143_30086873_30087631_30088363_30088502_30088591_30089463_30090470_30090625_30092119_30092423_30093018_30093178_30094105_30094224_30095828_30096017_30096738_30096852_30099499_30099616_30099929_30100011_30101555_30101648_30104228_30104403_30109293_30109446_30169578_30169773_30217947
ENSMUSG00000020315.19_9	chr11	-	4095	17	ISM	ENSMUSG00000020315.19	ENSMUST00000011877.13	8238	35	95796	6	-12617	-6	3prime_fragment	FALSE	canonical	3	421	junction_15	77.9198305952984	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTAGCCTATGACTAGC	4938	False	NA	-14	True	ATTAAA	-8	NA	30073976	30049401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529_30070812_30070975_30071066_30071475_30071701_30073798
ENSMUSG00000020319.10_2	chr11	+	2478	17	NIC	ENSMUSG00000020319.10	novel	2792	18	NA	NA	-204	-384	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	4.70372193055669	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATTTTAATAGAAGGAAAGA	NA	False	NA	NA	False	AATAAA	-15	NA	21522030	21848605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_21522371_21602225_21602311_21609994_21610043_21610888_21610940_21613996_21614068_21614325_21614386_21639567_21639683_21645113_21645306_21661461_21662072_21671102_21671292_21674512_21674637_21698877_21698942_21763359_21763463_21807446_21807610_21834983_21835088_21836259_21836289_21848475
ENSMUSG00000020319.10_3	chr11	+	2591	18	FSM	ENSMUSG00000020319.10	ENSMUST00000020568.10	2792	18	-116	317	-116	-317	multi-exon	FALSE	canonical	2	7	junction_1	3.74350648863466	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATTGTTTTCATAATG	NA	False	NA	NA	False	AATAAA	-8	NA	21522118	21848672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_21522371_21602225_21602311_21609994_21610043_21610888_21610940_21613996_21614068_21614325_21614386_21639567_21639683_21641769_21641904_21645113_21645306_21661461_21662072_21671102_21671292_21674512_21674637_21698877_21698942_21763359_21763463_21807446_21807610_21834983_21835088_21836259_21836289_21848475
ENSMUSG00000020319.10_5	chr11	+	2174	15	ISM	ENSMUSG00000020319.10	ENSMUST00000020568.10	2792	18	88673	330	-28675	-330	3prime_fragment	FALSE	canonical	2	7	junction_13	3.8145799779482	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAGTTCCGAAACAAT	9765	False	NA	NA	False	AATAGA	-43	NA	21610907	21848659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_21610940_21613996_21614068_21614325_21614386_21639567_21639683_21641769_21641904_21645113_21645306_21661461_21662072_21671102_21671292_21674512_21674637_21698877_21698942_21763359_21763463_21807446_21807610_21834983_21835088_21836259_21836289_21848475
ENSMUSG00000020321.17_1	chr11	-	1275	9	FSM	ENSMUSG00000020321.17	ENSMUST00000239073.2	1958	9	127	556	127	-461	multi-exon	FALSE	canonical	3	1237	junction_4	96.8522553944925	902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATCTCTCAGACTCTG	NA	False	NA	-14	True	AATAAA	-13	NA	21521807	21507247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
ENSMUSG00000020325.11_0	chr10	+	1942	5	FSM	ENSMUSG00000020325.11	ENSMUST00000020575.5	1955	5	4	9	4	-9	multi-exon	FALSE	canonical	2	5	junction_4	2.6809513236909	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACCACCGTGTATTTTC	NA	False	NA	NA	False	AATAAA	-8	NA	79613109	79618455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79613232_79614396_79614583_79615798_79616015_79616957_79617186_79617265
ENSMUSG00000020326.8_0	chr11	-	3425	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	79	8	79	-8	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCAACCTTCCTTGTTT	NA	False	NA	-13	True	AATAAA	-8	NA	40646059	40639386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
ENSMUSG00000020326.8_5	chr11	-	1835	1	ISM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	4917	8	3544	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCAACCTTCCTTGTTT	NA	False	NA	-13	True	AATAAA	-8	NA	40641221	40639386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_40639400_40641200
ENSMUSG00000020327.5_0	chr10	+	1317	3	FSM	ENSMUSG00000020327.5	ENSMUST00000219228.2	2167	3	47	803	-14	271	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGCATGGTTGCTTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	79590956	79593627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79591140_79592413_79592518_79592597
ENSMUSG00000020328.11_0	chr11	+	3855	2	FSM	ENSMUSG00000020328.11	ENSMUST00000144601.2	445	2	-2630	-780	9	-2	multi-exon	FALSE	canonical	3	1147	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTACTTTTTCTTTT	NA	False	NA	27	True	AATAAA	-19	NA	40624502	40630871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_40627472_40629985
ENSMUSG00000020328.11_1	chr11	+	1549	4	FSM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	26	2	26	-2	multi-exon	FALSE	canonical	3	1122	junction_2	37.9326889224701	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTACTTTTTCTTTT	NA	False	NA	27	True	AATAAA	-19	NA	40624519	40630871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985
ENSMUSG00000020328.11_10	chr11	+	763	1	ISM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	5614	3	2975	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATATTTTACTTTTTCTTT	NA	False	NA	26	True	AATAAA	-18	NA	40630107	40630870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_40630100_40630900
ENSMUSG00000020328.11_3	chr11	+	3411	3	NIC	ENSMUSG00000020328.11	novel	1577	4	NA	NA	27	-2	intron_retention	FALSE	canonical	3	1122	junction_1	12.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTACTTTTTCTTTT	NA	False	NA	27	True	AATAAA	-19	NA	40624520	40630871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_40626894_40627319_40627472_40629985
ENSMUSG00000020328.11_6	chr11	+	1469	4	FSM	ENSMUSG00000020328.11	ENSMUST00000127382.2	727	4	-250	-492	29	-4	multi-exon	FALSE	canonical	3	70	junction_2	523.696052644619	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATTTTACTTTTTCTT	NA	False	NA	25	True	AATAAA	-17	NA	40624522	40630869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_40624982_40626844_40626894_40627394_40627472_40629985
ENSMUSG00000020328.11_9	chr11	+	1602	4	FSM	ENSMUSG00000020328.11	ENSMUST00000141839.2	577	4	-466	-559	-5	-4	multi-exon	FALSE	canonical	3	90	junction_1	492.487788906712	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATTTTACTTTTTCTT	NA	False	NA	25	True	AATAAA	-17	NA	40624565	40630869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_40625083_40626844_40626894_40627319_40627472_40629985
ENSMUSG00000020329.13_0	chr10	-	3741	21	FSM	ENSMUSG00000020329.13	ENSMUST00000020580.13	3755	21	7	7	-1	-7	multi-exon	TRUE	canonical	3	126	junction_16	17.3118456555042	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAGTAATGAGACGCTG	4716	False	NA	-14	True	NA	NA	NA	79582406	79571970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79575977_79576200_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011_79579563_79581507_79581607_79582298
ENSMUSG00000020329.13_18	chr10	-	3882	22	NIC	ENSMUSG00000020329.13	novel	3755	21	NA	NA	-1	-7	combination_of_known_junctions	FALSE	canonical	1	2	junction_19	44.9978583516574	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAGTAATGAGACGCTG	4716	False	NA	-14	True	NA	NA	NA	79582406	79571970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79575977_79576200_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011_79579563_79579712_79579854_79581507_79581607_79582298
ENSMUSG00000020329.13_8	chr10	-	1671	12	ISM	ENSMUSG00000020329.13	ENSMUST00000020580.13	3755	21	6928	13	-276	-13	3prime_fragment	FALSE	canonical	3	129	junction_10	16.2917613413438	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCCACCAAAGTAATGAG	NA	False	NA	-20	True	AATGAA	-45	NA	79575485	79571976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976
ENSMUSG00000020330.17_0	chr11	-	3523	19	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	8	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	157.1472239653	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAACTCATACACCCAA	NA	False	NA	-19	True	AATAAA	-6	NA	40624235	40592232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_40592459_40592802_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
ENSMUSG00000020330.17_3	chr11	-	3867	18	FSM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	14	11	8	-11	multi-exon	FALSE	canonical	3	534	junction_10	59.4855104336938	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAACTCATACACCCAA	NA	False	NA	-19	True	AATAAA	-6	NA	40624235	40592232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
ENSMUSG00000020331.10_0	chr10	+	3221	8	FSM	ENSMUSG00000020331.10	ENSMUST00000099513.8	3195	8	-22	-4	-22	4	multi-exon	FALSE	canonical	3	76	junction_3	3.18157963590287	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCAGCGTCTCATTACTT	NA	False	NA	28	True	AATAAA	-18	NA	79552445	79571946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79553054_79560221_79560646_79561980_79562143_79564726_79564946_79566680_79566828_79569504_79569746_79569896_79570062_79570691
ENSMUSG00000020331.10_10	chr10	+	2473	7	ISM	ENSMUSG00000020331.10	ENSMUST00000099513.8	3195	8	7894	-4	7894	4	3prime_fragment	FALSE	canonical	3	76	junction_2	3.41565025531987	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCAGCGTCTCATTACTT	NA	False	NA	28	True	AATAAA	-18	NA	79560361	79571946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79560646_79561980_79562143_79564726_79564946_79566680_79566828_79569504_79569746_79569896_79570062_79570691
ENSMUSG00000020331.10_12	chr10	+	2419	5	ISM	ENSMUSG00000020331.10	ENSMUST00000099513.8	3195	8	11867	-4	11867	4	3prime_fragment	FALSE	canonical	3	78	junction_1	3.53553390593274	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCAGCGTCTCATTACTT	NA	False	NA	28	True	AATAAA	-18	NA	79564334	79571946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79564946_79566680_79566828_79569504_79569746_79569896_79570062_79570691
ENSMUSG00000020331.10_16	chr10	+	1073	1	Genic_Genomic	ENSMUSG00000020331.10	novel	NA	NA	NA	NA	18406	4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCAGCGTCTCATTACTT	NA	False	NA	28	True	AATAAA	-18	NA	79570873	79571946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_+_79570900_79571900
ENSMUSG00000020333.18_0	chr11	+	2533	21	NIC	ENSMUSG00000020333.18	novel	5804	21	NA	NA	29	13	combination_of_known_junctions	FALSE	canonical	3	31	junction_10	9.20584053739798	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACATAAAGAAAAAACATA	NA	False	NA	-16	True	AATATA	-26	NA	54194652	54252340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227896_54227975_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
ENSMUSG00000020333.18_1	chr11	+	2533	21	FSM	ENSMUSG00000020333.18	ENSMUST00000093106.12	5804	21	29	3242	29	13	multi-exon	FALSE	canonical	3	16	junction_10	11.8346947573649	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACATAAAGAAAAAACATA	NA	False	NA	-16	True	AATATA	-26	NA	54194652	54252340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227761_54227840_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
ENSMUSG00000020333.18_10	chr11	+	2663	21	FSM	ENSMUSG00000020333.18	ENSMUST00000108905.10	5807	21	-94	3238	86	13	multi-exon	FALSE	canonical	3	10	junction_1	14.4874946074192	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACATAAAGAAAAAACATA	NA	False	NA	-16	True	AATATA	-26	NA	54194933	54252340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_54195160_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227761_54227840_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
ENSMUSG00000020333.18_11	chr11	+	2570	21	FSM	ENSMUSG00000020333.18	ENSMUST00000108904.10	2594	21	-1	25	-1	13	multi-exon	FALSE	canonical	3	10	junction_1	12.5876924017073	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACATAAAGAAAAAACATA	NA	False	NA	-16	True	AATATA	-26	NA	54195026	54252340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_54195160_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227896_54227975_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
ENSMUSG00000020333.18_9	chr11	+	2452	20	NIC	ENSMUSG00000020333.18	novel	5804	21	NA	NA	36	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	13.9037052396324	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAGAAAAAACATAACTG	NA	False	NA	-12	True	ATTAAA	-2	NA	54194659	54252344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
ENSMUSG00000020335.14_1	chr11	-	2470	5	FSM	ENSMUSG00000020335.14	ENSMUST00000109124.10	2455	5	8	-23	8	23	multi-exon	FALSE	canonical	0	0	junction_1	1.78535710713571	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAGAAAGAAAGAGAACT	5259	False	NA	NA	False	NA	NA	NA	50822452	50812626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_50814668_50819390_50819487_50820203_50820331_50821727_50821813_50822331
ENSMUSG00000020340.17_1	chr11	-	3280	24	ISM	ENSMUSG00000020340.17	ENSMUST00000093166.11	6298	31	35413	2235	-6212	-19	3prime_fragment	FALSE	canonical	3	87	junction_12	13.4680185487506	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	46167708	46086916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_46087295_46089817_46089966_46091472_46091712_46098213_46098309_46099114_46099188_46112162_46112294_46113436_46113528_46114888_46115033_46130830_46130919_46133113_46133314_46138385_46138506_46140556_46140666_46143430_46143508_46144773_46144871_46145336_46145494_46148375_46148530_46151626_46151775_46152263_46152431_46156730_46156857_46157536_46157657_46161378_46161497_46163435_46163528_46165464_46165570_46167605
ENSMUSG00000020340.17_2	chr11	-	4092	31	FSM	ENSMUSG00000020340.17	ENSMUST00000093166.11	6298	31	-29	2235	-29	-19	multi-exon	FALSE	canonical	3	40	junction_25	27.300895386212	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	46203150	46086916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_46087295_46089817_46089966_46091472_46091712_46098213_46098309_46099114_46099188_46112162_46112294_46113436_46113528_46114888_46115033_46130830_46130919_46133113_46133314_46138385_46138506_46140556_46140666_46143430_46143508_46144773_46144871_46145336_46145494_46148375_46148530_46151626_46151775_46152263_46152431_46156730_46156857_46157536_46157657_46161378_46161497_46163435_46163528_46165464_46165570_46167605_46167735_46168885_46168983_46170778_46170961_46174983_46175086_46176893_46176972_46180458_46180549_46182339_46182480_46203053
ENSMUSG00000020346.17_0	chr11	+	3092	4	FSM	ENSMUSG00000020346.17	ENSMUST00000167400.8	3151	4	58	1	3	-1	multi-exon	TRUE	canonical	2	7	junction_1	35.4432253360529	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATAAGTGTGTGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	49135075	49153848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49135167_49136019_49136445_49142376_49142502_49151397
ENSMUSG00000020346.17_14	chr11	+	3459	2	ISM	ENSMUSG00000020346.17	ENSMUST00000101293.11	2729	3	154	10	76	-2	3prime_fragment	FALSE	canonical	3	91	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAATAAGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	49141492	49153847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_49142502_49151397
ENSMUSG00000020346.17_16	chr11	+	2718	3	NNC	ENSMUSG00000020346.17	novel	3151	4	NA	NA	76	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	42.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAAGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	49141492	49153849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_49141634_49142376_49142502_49151397
ENSMUSG00000020346.17_18	chr11	+	2115	1	ISM	ENSMUSG00000020346.17	ENSMUST00000167400.8	3151	4	16717	0	4664	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAAGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	49151734	49153849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_49151700_49153800
ENSMUSG00000020346.17_4	chr11	+	3222	4	NIC	ENSMUSG00000020346.17	novel	633	3	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	37.8623236946117	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAAGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	49135370	49153849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_49135591_49136019_49136445_49142376_49142502_49151397
ENSMUSG00000020346.17_6	chr11	+	2587	2	ISM	ENSMUSG00000020346.17	ENSMUST00000081794.7	2976	3	1237	5	252	0	3prime_fragment	FALSE	canonical	3	29	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAAGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	49136309	49153849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_49136445_49151397
ENSMUSG00000020346.17_7	chr11	+	2713	3	FSM	ENSMUSG00000020346.17	ENSMUST00000156607.8	633	3	251	-2331	251	0	multi-exon	FALSE	canonical	3	30	junction_1	30.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAAGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	49136308	49153849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49136445_49142376_49142502_49151397
ENSMUSG00000020346.17_9	chr11	+	2674	3	FSM	ENSMUSG00000020346.17	ENSMUST00000101293.11	2729	3	47	8	-6	0	multi-exon	FALSE	canonical	3	40	junction_1	25.5	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAAGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	49141385	49153849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49141483_49142376_49142502_49151397
ENSMUSG00000020349.5_0	chr11	+	1914	7	FSM	ENSMUSG00000020349.5	ENSMUST00000020608.3	7102	7	146	5042	146	3044	multi-exon	TRUE	canonical	3	1809	junction_6	129.264586539908	2684	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTCTCTGGCAACTCCT	NA	False	NA	21	True	AATAAA	-17	NA	51989653	52013563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_51989978_52003946_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012728
ENSMUSG00000020357.4_0	chr11	+	5815	30	FSM	ENSMUSG00000020357.4	ENSMUST00000020617.3	6255	30	424	16	424	-16	multi-exon	TRUE	canonical	0	0	junction_18	1.68012796070067	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCTTTGAGTTATAATGAA	NA	False	NA	NA	False	AATAAA	-10	NA	49500513	49543550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49500655_49515471_49515569_49516053_49516299_49516524_49516638_49516727_49516891_49517082_49517223_49517495_49517665_49517946_49518065_49521095_49521251_49521339_49521503_49522805_49522933_49523969_49524079_49524812_49525176_49525475_49525623_49525719_49525852_49526000_49526108_49526428_49526565_49527052_49527158_49527485_49527600_49527809_49527899_49528028_49528180_49528612_49528708_49529088_49529212_49531008_49531121_49533047_49533148_49534261_49534368_49535110_49535260_49536717_49536839_49538773_49538860_49541711
ENSMUSG00000020357.4_3	chr11	+	3107	11	ISM	ENSMUSG00000020357.4	ENSMUST00000020617.3	6255	30	27596	4	27596	-4	3prime_fragment	FALSE	canonical	0	0	junction_6	2.20227155455452	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATGAATAGATTCTAAGT	NA	False	NA	NA	False	AATAAA	-22	NA	49527685	49543562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_49527899_49528028_49528180_49528612_49528708_49529088_49529212_49531008_49531121_49533047_49533148_49534261_49534368_49535110_49535260_49536717_49536839_49538773_49538860_49541711
ENSMUSG00000020358.18_2	chr11	-	1712	8	FSM	ENSMUSG00000020358.18	ENSMUST00000109103.4	1437	8	2	-277	2	-28	multi-exon	FALSE	canonical	3	1798	junction_2	581.731405866512	1626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATGAAAAACAAA	NA	False	NA	-45	True	NA	NA	NA	51497672	51491723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51492306_51492576_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493
ENSMUSG00000020358.18_5	chr11	-	1571	7	FSM	ENSMUSG00000020358.18	ENSMUST00000074669.10	2370	7	2	797	2	-28	multi-exon	FALSE	canonical	3	2171	junction_1	392.745889008826	1502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATGAAAAACAAA	NA	False	NA	-45	True	NA	NA	NA	51497672	51491723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51492306_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493
ENSMUSG00000020359.14_0	chr11	+	1852	13	FSM	ENSMUSG00000020359.14	ENSMUST00000167797.8	3116	13	31	1233	-1	2	multi-exon	FALSE	canonical	3	19	junction_6	4.87054639873415	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATTTACTTCTAAGACCC	NA	False	NA	NA	False	ATTAAA	-17	NA	51475614	51494083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_51475707_51476340_51476460_51477387_51477548_51482225_51482301_51482832_51482921_51482995_51483113_51484430_51484514_51484742_51484969_51489102_51489258_51489477_51489568_51490292_51490424_51491395_51491450_51493621
ENSMUSG00000020361.14_1	chr11	-	2840	19	FSM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	15	1763	15	1303	multi-exon	FALSE	canonical	3	1487	junction_13	205.703280251368	3565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTTTAAGTTGTCAACT	NA	False	NA	-47	True	ATTAAA	-13	NA	53191269	53152403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886
ENSMUSG00000020362.14_0	chr11	-	3724	12	FSM	ENSMUSG00000020362.14	ENSMUST00000020624.7	2498	12	1	-1227	1	1212	multi-exon	FALSE	canonical	3	150	junction_7	24.0849049121664	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTTAAGAAATTCTCTAA	NA	False	NA	NA	False	AATAAA	-32	NA	49603536	49564312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49575983_49576089_49576180_49577673_49577760_49579991_49580179_49593367_49593482_49603180
ENSMUSG00000020362.14_1	chr11	-	2725	1	ISM	ENSMUSG00000020362.14	ENSMUST00000145353.8	5736	12	38493	3	6171	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTTTAAAAGTGTAGT	NA	False	NA	-13	True	AATAAA	-16	NA	49565057	49562332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_49562300_49565100
ENSMUSG00000020362.14_4	chr11	-	3754	12	FSM	ENSMUSG00000020362.14	ENSMUST00000145353.8	5736	12	5	1977	5	1218	multi-exon	FALSE	canonical	3	61	junction_7	45.9026998251701	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATTCTCTAAAGGTCT	NA	False	NA	NA	False	AATAAA	-38	NA	49603545	49564306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49575983_49576074_49576180_49577673_49577760_49579991_49580179_49593367_49593482_49603180
ENSMUSG00000020362.14_5	chr11	-	5793	11	NIC	ENSMUSG00000020362.14	novel	5736	12	NA	NA	17	-5	intron_retention	TRUE	canonical	3	170	junction_10	17.8440466262561	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAATATTTTAAAAGTGTA	NA	False	NA	-15	True	AATAAA	-14	NA	49603520	49562334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49576180_49577673_49577760_49579991_49580179_49593367_49593482_49603180
ENSMUSG00000020362.14_6	chr11	-	3637	12	NNC	ENSMUSG00000020362.14	novel	2498	12	NA	NA	1	1218	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	63.2697230216766	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATTCTCTAAAGGTCT	NA	False	NA	NA	False	AATAAA	-38	NA	49603536	49564306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49575983_49576089_49576180_49577673_49577760_49579991_49580086_49593367_49593482_49603180
ENSMUSG00000020363.7_0	chr11	+	2955	19	FSM	ENSMUSG00000020363.7	ENSMUST00000020629.5	2947	19	-9	1	0	-1	multi-exon	FALSE	canonical	2	320	junction_10	53.5808204583287	853	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCGACTTGTTTGAAT	NA	False	NA	26	True	AATAAA	-16	NA	49685004	49729439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49685071_49695778_49695887_49698521_49698621_49699860_49699987_49701790_49701850_49702496_49702632_49706106_49706169_49709406_49709487_49709963_49710082_49714038_49714203_49714560_49714657_49714767_49714866_49715158_49715280_49717570_49717729_49717957_49718073_49720566_49720695_49723687_49723856_49726438_49726601_49728547
ENSMUSG00000020364.15_0	chr11	+	2461	5	FSM	ENSMUSG00000020364.15	ENSMUST00000102766.10	2592	5	31	100	-6	-100	multi-exon	FALSE	canonical	2	7	junction_3	1.29903810567666	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTCTGGAACATCTCCT	NA	False	NA	NA	False	AATAAA	-30	NA	50950114	50962089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_50950230_50950898_50950982_50951686_50951814_50952229_50952326_50960049
ENSMUSG00000020364.15_2	chr11	+	2601	5	FSM	ENSMUSG00000020364.15	ENSMUST00000109122.8	4165	5	-10	1574	-10	-137	multi-exon	FALSE	canonical	1	1	junction_2	2.77263412660235	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAGATTAAAATGA	NA	False	NA	NA	False	AAAAAG	-5	NA	50950110	50962052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_50950230_50950612_50950869_50951686_50951814_50952229_50952326_50960049
ENSMUSG00000020364.15_5	chr11	+	1746	1	ISM	ENSMUSG00000020364.15	ENSMUST00000102766.10	2592	5	10258	102	9393	-102	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGTCTCTGGAACATCTC	NA	False	NA	NA	False	AATAAA	-28	NA	50960341	50962087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_50960300_50962100
ENSMUSG00000020366.19_0	chr11	+	4319	12	FSM	ENSMUSG00000020366.19	ENSMUST00000109179.9	4682	12	29	334	9	-324	multi-exon	FALSE	canonical	3	70	junction_7	138.247771341862	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAAAATGTACAGCA	NA	False	NA	13	True	AATACA	-12	NA	49737606	49776914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49764662_49764735_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773968
ENSMUSG00000020366.19_1	chr11	+	4322	12	FSM	ENSMUSG00000020366.19	ENSMUST00000020634.14	4675	12	19	334	1	-324	multi-exon	FALSE	canonical	3	274	junction_7	40.7615521322656	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAAAATGTACAGCA	NA	False	NA	13	True	AATACA	-12	NA	49737598	49776914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
ENSMUSG00000020366.19_3	chr11	+	4327	12	FSM	ENSMUSG00000020366.19	ENSMUST00000164643.8	4682	12	21	334	1	-324	multi-exon	FALSE	canonical	3	84	junction_11	90.1850256027862	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAAAATGTACAGCA	NA	False	NA	13	True	AATACA	-12	NA	49737598	49776914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773968
ENSMUSG00000020366.19_4	chr11	+	4322	12	FSM	ENSMUSG00000020366.19	ENSMUST00000178543.8	4677	12	21	334	1	-324	multi-exon	FALSE	canonical	3	70	junction_7	121.043192891854	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAAAATGTACAGCA	NA	False	NA	13	True	AATACA	-12	NA	49737598	49776914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49764662_49764735_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
ENSMUSG00000020366.19_48	chr11	+	1950	1	ISM	ENSMUSG00000020366.19	ENSMUST00000109179.9	4682	12	37479	242	29973	-232	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACGAATAGATGTTGAAG	NA	False	NA	105	True	NA	NA	NA	49775056	49777006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_49775100_49777000
ENSMUSG00000020366.19_5	chr11	+	4269	12	NIC	ENSMUSG00000020366.19	novel	4675	12	NA	NA	14	-324	combination_of_known_junctions	FALSE	canonical	3	26	junction_4	104.259609224774	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAAAATGTACAGCA	NA	False	NA	13	True	AATACA	-12	NA	49737611	49776914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49760038_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
ENSMUSG00000020368.16_0	chr11	-	3710	15	FSM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	53	16	53	-16	multi-exon	FALSE	canonical	3	3893	junction_7	208.647160908319	7491	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAGCAAGAAATGAATACA	8189	False	NA	-70	True	AATAAA	-6	NA	50216447	50185309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
ENSMUSG00000020372.16_1	chr11	+	675	6	ISM	ENSMUSG00000020372.16	ENSMUST00000139959.8	1542	7	1954	3	-841	-3	3prime_fragment	FALSE	canonical	3	5433	junction_5	527.977499520576	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCTTCTATATGTGA	NA	False	NA	20	True	AATAAA	-12	NA	48693137	48696912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
ENSMUSG00000020372.16_2	chr11	+	1104	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	-6	349	-3	-3	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	3068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCTTCTATATGTGA	NA	False	NA	20	True	AATAAA	-12	NA	48691180	48696912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
ENSMUSG00000020372.16_41	chr11	+	844	7	ISM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	1344	349	1330	-3	3prime_fragment	FALSE	canonical	1	1907	junction_1	1751.95706441555	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCTTCTATATGTGA	NA	False	NA	20	True	AATAAA	-12	NA	48692530	48696912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
ENSMUSG00000020375.10_1	chr11	-	2669	18	FSM	ENSMUSG00000020375.10	ENSMUST00000020643.4	2688	18	10	9	10	-9	multi-exon	FALSE	canonical	3	52	junction_10	7.873128931343	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGACAAAGTGCTGGCCTC	4159	False	NA	-9	True	AATAAA	-23	NA	50321942	50280121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_50280786_50281120_50281199_50282845_50282895_50285747_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50321610
ENSMUSG00000020375.10_11	chr11	-	1984	15	NIC	ENSMUSG00000020375.10	novel	2688	18	NA	NA	-28	-5214	combination_of_known_junctions	FALSE	canonical	3	21	junction_14	13.7040512407158	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGAGTACACTGTAGCTG	777	False	NA	NA	False	ATTAAA	-17	NA	50312846	50285413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50312742
ENSMUSG00000020375.10_3	chr11	-	2449	18	NIC	ENSMUSG00000020375.10	novel	2688	18	NA	NA	-36	-9	combination_of_known_junctions	FALSE	canonical	3	21	junction_17	12.7347167373532	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGACAAAGTGCTGGCCTC	769	False	NA	-9	True	AATAAA	-23	NA	50312854	50280121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_50280786_50281120_50281199_50282845_50282895_50285747_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50312742
ENSMUSG00000020376.18_0	chr11	+	1463	9	FSM	ENSMUSG00000020376.18	ENSMUST00000102776.5	1502	9	3	36	3	-36	multi-exon	FALSE	canonical	3	193	junction_8	44.3931300991494	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAATAAAATAAAAGT	NA	False	NA	-12	True	CATAAA	-33	NA	49916177	49995544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_49990072_49990167_49995375
ENSMUSG00000020376.18_1	chr11	+	1374	8	FSM	ENSMUSG00000020376.18	ENSMUST00000054684.14	1415	8	4	37	2	-32	multi-exon	FALSE	canonical	3	67	junction_7	82.1161447249552	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAATAAAATAAAAGTACCG	NA	False	NA	-8	True	CATAAA	-37	NA	49916176	49995548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_49995375
ENSMUSG00000020376.18_9	chr11	+	1458	8	FSM	ENSMUSG00000020376.18	ENSMUST00000238748.2	7879	8	13	6408	12	-6408	multi-exon	FALSE	canonical	3	19	junction_7	98.8135742141716	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGAGGTTTGATGGCAG	NA	False	NA	NA	False	NA	NA	NA	49916186	50010138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_50009871
ENSMUSG00000020380.17_1	chr11	-	5128	25	FSM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	4	21	4	-21	multi-exon	FALSE	canonical	2	205	junction_2	31.5695880379977	468	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAGCAAATATTTGTGT	NA	False	NA	-20	True	NA	NA	NA	53598142	53540366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_53541483_53543060_53543195_53545703_53545847_53546359_53546446_53558848_53559074_53560456_53560585_53565524_53565639_53565729_53565823_53566728_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
ENSMUSG00000020381.11_0	chr11	+	1135	7	FSM	ENSMUSG00000020381.11	ENSMUST00000020647.10	1142	7	4	3	4	-3	multi-exon	FALSE	canonical	3	161	junction_2	8.63616427202108	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTCCTCTTGCTGCTACA	NA	False	NA	4	True	AATAAA	-14	NA	50065679	50090939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_50065779_50067653_50067714_50073318_50073408_50085034_50085111_50087770_50087920_50088445_50088531_50090362
ENSMUSG00000020385.17_0	chr11	+	1863	13	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-2	-1	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	39.9666527661916	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTTGTGATTGAGTAT	NA	False	NA	12	True	AGTAAA	-12	NA	51153993	51172590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_1	chr11	+	1905	13	FSM	ENSMUSG00000020385.17	ENSMUST00000093132.13	1949	13	42	2	-6	-2	multi-exon	FALSE	canonical	3	35	junction_3	48.5840480221875	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCACTTTGTGATTGAGTA	NA	False	NA	11	True	AGTAAA	-11	NA	51153982	51172589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_51154097_51157997_51158159_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_13	chr11	+	3404	12	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	1	-1	intron_retention	FALSE	canonical	3	44	junction_2	39.5929704087117	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTTGTGATTGAGTAT	NA	False	NA	12	True	AGTAAA	-12	NA	51153989	51172590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_14	chr11	+	5419	12	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	1	-1	intron_retention	FALSE	canonical	3	16	junction_2	45.0975068486822	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTTGTGATTGAGTAT	NA	False	NA	12	True	AGTAAA	-12	NA	51154013	51172590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51154097_51157997_51158159_51158991_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_16	chr11	+	6269	11	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	1	2	intron_retention	FALSE	canonical	3	87	junction_2	28.0536985083964	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGATTGAGTATTCTTT	NA	False	NA	17	True	AGTAAA	-17	NA	51154001	51172595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51154097_51157997_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_17	chr11	+	1938	14	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	53.6563688406117	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTTGTGATTGAGTAT	NA	False	NA	12	True	AGTAAA	-12	NA	51153985	51172590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51154097_51157997_51158159_51158991_51159059_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_2	chr11	+	1804	12	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	62	junction_2	35.3321898042513	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTTGTGATTGAGTAT	NA	False	NA	12	True	AGTAAA	-12	NA	51153993	51172590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51154097_51157997_51158159_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_22	chr11	+	1943	14	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	4	-1	combination_of_known_splicesites	FALSE	canonical	3	35	junction_4	49.8634822681421	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTTGTGATTGAGTAT	NA	False	NA	12	True	AGTAAA	-12	NA	51154004	51172590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_35	chr11	+	2768	9	FSM	ENSMUSG00000020385.17	ENSMUST00000109111.2	1427	9	-1342	1	110	-1	multi-exon	FALSE	canonical	3	122	junction_3	22.366269246345	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTTGTGATTGAGTAT	NA	False	NA	12	True	AGTAAA	-12	NA	51162935	51172590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_43	chr11	+	5062	12	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	81	junction_2	32.0314927676751	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTTGTGATTGAGTAT	NA	False	NA	12	True	AGTAAA	-12	NA	51153999	51172590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51154097_51157997_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_7	chr11	+	3337	11	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	62	junction_2	33.4628151834241	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTGATTGAGTATTCT	NA	False	NA	15	True	AGTAAA	-15	NA	51154000	51172593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51154097_51157997_51158159_51162626_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_9	chr11	+	3452	13	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	9	junction_3	55.0845310005954	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCACTTTGTGATTGAGTA	NA	False	NA	11	True	AGTAAA	-11	NA	51154007	51172589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51154097_51157997_51158159_51158991_51159059_51161363_51161423_51162626_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020386.6_0	chr11	+	1184	7	FSM	ENSMUSG00000020386.6	ENSMUST00000020653.6	1201	7	17	0	10	0	multi-exon	FALSE	canonical	3	666	junction_5	46.9006041183551	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTGTTGGGCAGCTGT	3582	False	NA	12	True	AATAAA	-18	NA	51654530	51682752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673665_51678976_51679081_51680023_51680156_51682153
ENSMUSG00000020387.16_12	chr11	-	6350	13	FSM	ENSMUSG00000020387.16	ENSMUST00000109091.2	6099	13	-249	-2	8	2	multi-exon	FALSE	canonical	0	0	junction_11	6.12145589073565	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGCTGCCATGACGTTC	8356	False	NA	-14	True	AATAAA	-14	NA	51748472	51704284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51708528_51709323_51709456_51711905_51712024_51715769_51716235_51717385_51717503_51719092_51719261_51721242_51721455_51722079_51722241_51726399_51726558_51737432_51737528_51739820_51739879_51745706_51745795_51748137
ENSMUSG00000020387.16_14	chr11	-	5512	8	ISM	ENSMUSG00000020387.16	ENSMUST00000109091.2	6099	13	26089	-4	25818	-1	3prime_fragment	FALSE	canonical	2	12	junction_7	2.55550625999976	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGCCATGACGTTCTG	NA	False	NA	-12	True	AATAAA	-16	NA	51722134	51704282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_51708528_51709323_51709456_51711905_51712024_51715769_51716235_51717385_51717503_51719092_51719261_51721242_51721455_51722079
ENSMUSG00000020387.16_2	chr11	-	6021	12	ISM	ENSMUSG00000020387.16	ENSMUST00000109091.2	6099	13	2430	-9	2159	4	3prime_fragment	FALSE	canonical	0	0	junction_11	5.3397000565776	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGACGTTCTGTTGTG	9868	False	NA	-7	True	AATAAA	-21	NA	51745793	51704277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_51708528_51709323_51709456_51711905_51712024_51715769_51716235_51717385_51717503_51719092_51719261_51721242_51721455_51722079_51722241_51726399_51726558_51737432_51737528_51739820_51739879_51745706
ENSMUSG00000020387.16_3	chr11	-	5183	12	FSM	ENSMUSG00000020387.16	ENSMUST00000020655.14	6273	12	112	978	112	-973	multi-exon	FALSE	canonical	2	9	junction_11	3.21926021993196	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAATGCTCGTTTACTTT	8460	False	NA	NA	False	AGTAAA	-7	NA	51748368	51705259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51708528_51709323_51709456_51711905_51712024_51715769_51716235_51717385_51717503_51719092_51719261_51721242_51721455_51722079_51722241_51726399_51726558_51737432_51737528_51739820_51739879_51748137
ENSMUSG00000020387.16_4	chr11	-	6095	13	NIC	ENSMUSG00000020387.16	novel	6099	13	NA	NA	21	4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	6.44204936336256	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGACGTTCTGTTGTG	8897	False	NA	-7	True	AATAAA	-21	NA	51747931	51704277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_51708528_51709323_51709456_51711905_51712024_51715769_51716235_51717385_51717503_51719092_51719261_51721242_51721455_51722079_51722241_51726399_51726558_51737432_51737528_51739820_51739879_51745706_51745795_51747858
ENSMUSG00000020387.16_7	chr11	-	2287	1	ISM	ENSMUSG00000020387.16	ENSMUST00000020655.14	6273	12	41910	2	41382	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCTGCCATGACGTTCT	NA	False	NA	-13	True	AATAAA	-15	NA	51706570	51704283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_51704300_51706600
ENSMUSG00000020388.13_1	chr11	-	1175	7	FSM	ENSMUSG00000020388.13	ENSMUST00000018755.10	1182	7	5	2	5	-2	multi-exon	FALSE	canonical	3	190	junction_5	18.9245578254523	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGCTAGTGTCTGGCCT	NA	False	NA	-4	True	AATAAA	-20	NA	53959835	53945755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_53946066_53946182_53946301_53946615_53946780_53946968_53947151_53950763_53950843_53954460_53954613_53959665
ENSMUSG00000020389.20_1	chr11	+	1791	9	NIC	ENSMUSG00000020389.20	novel	2051	13	NA	NA	2	-8	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	2.64575131106459	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGACAAATTGCCACAGAGT	NA	False	NA	NA	False	ATTAAA	-13	NA	51895053	51918383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51895245_51895739_51895920_51901957_51902153_51909103_51909283_51910556_51910670_51913564_51913705_51916665_51916755_51917585_51917746_51917839
ENSMUSG00000020390.13_0	chr11	-	2292	2	ISM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	10410	-407	10127	407	3prime_fragment	FALSE	canonical	3	792	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGACTTTGTCACTTATT	NA	False	NA	-3	True	AATACA	-13	NA	51881179	51877086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_51877638_51879438
ENSMUSG00000020390.13_1	chr11	-	987	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	42	763	37	407	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGACTTTGTCACTTATT	NA	False	NA	-3	True	AATACA	-13	NA	51891269	51877086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
ENSMUSG00000020390.13_2	chr11	-	3405	5	NIC	ENSMUSG00000020390.13	novel	1792	6	NA	NA	37	407	intron_retention	FALSE	canonical	3	629	junction_3	65.1704495918204	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGACTTTGTCACTTATT	NA	False	NA	-3	True	AATACA	-13	NA	51891269	51877086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51888726_51891119
ENSMUSG00000020390.13_3	chr11	-	998	7	FSM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	-6	-407	-6	407	multi-exon	FALSE	canonical	3	81	junction_6	225.904662782039	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGACTTTGTCACTTATT	NA	False	NA	-3	True	AATACA	-13	NA	51891595	51877086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119_51891189_51891503
ENSMUSG00000020390.13_6	chr11	-	2594	4	ISM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	3525	-407	3242	407	3prime_fragment	FALSE	canonical	3	629	junction_3	74.8079021375565	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGACTTTGTCACTTATT	NA	False	NA	-3	True	AATACA	-13	NA	51888064	51877086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200
ENSMUSG00000020392.9_0	chr11	+	1825	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	3	4	3	-4	multi-exon	FALSE	canonical	3	1066	junction_1	20	971	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAGTTAGGTTCAAGTT	NA	False	NA	NA	False	AATAAA	-16	NA	51858490	51868157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_51858785_51860970_51861071_51866726
ENSMUSG00000020393.17_2	chr11	-	4923	9	FSM	ENSMUSG00000020393.17	ENSMUST00000020662.15	4856	9	-72	5	-72	-5	multi-exon	FALSE	canonical	3	45	junction_1	7.36121593216773	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACCGTGGTGAGGCCAG	NA	False	NA	-9	True	AATAAA	-16	NA	5211630	5141556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5145122_5148309_5148395_5149501_5149712_5151696_5152030_5159938_5160093_5165406_5165532_5188410_5188503_5193774_5193938_5211434
ENSMUSG00000020393.17_3	chr11	-	2423	1	ISM	ENSMUSG00000020393.17	ENSMUST00000020662.15	4856	9	67579	5	44469	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACCGTGGTGAGGCCAG	8266	False	NA	-9	True	AATAAA	-16	NA	5143979	5141556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5141600_5144000
ENSMUSG00000020396.9_0	chr11	-	3514	4	FSM	ENSMUSG00000020396.9	ENSMUST00000093369.5	3994	4	472	8	472	-8	multi-exon	FALSE	canonical	3	23	junction_2	3.09120616516523	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAACTGTGGTTGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	4897592	4888761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4891416_4893850_4893976_4895110_4895311_4897057
ENSMUSG00000020396.9_2	chr11	-	1723	1	ISM	ENSMUSG00000020396.9	ENSMUST00000093369.5	3994	4	7584	4	7584	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTGGTTGTTTTTAC	NA	False	NA	NA	False	AATAAA	-19	NA	4890480	4888757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_4888800_4890500
ENSMUSG00000020396.9_3	chr11	-	2764	2	ISM	ENSMUSG00000020396.9	ENSMUST00000093369.5	3994	4	4104	8	4104	-8	3prime_fragment	FALSE	canonical	3	30	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAACTGTGGTTGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	4893960	4888761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_4891416_4893850
ENSMUSG00000020397.16_0	chr11	+	1184	3	FSM	ENSMUSG00000020397.16	ENSMUST00000020665.13	1193	3	6	3	-3	-3	multi-exon	FALSE	canonical	3	177	junction_1	179.5	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACGAATTGTCATTCTT	NA	False	NA	9	True	AATAAA	-11	NA	46327784	46332351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_46327837_46330632_46330803_46331389
ENSMUSG00000020397.16_1	chr11	+	1014	2	FSM	ENSMUSG00000020397.16	ENSMUST00000152119.2	381	2	33	-666	-3	-3	multi-exon	FALSE	canonical	3	22	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACGAATTGTCATTCTT	NA	False	NA	9	True	AATAAA	-11	NA	46327784	46332351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_46327837_46331389
ENSMUSG00000020397.16_11	chr11	+	3924	2	FSM	ENSMUSG00000020397.16	ENSMUST00000133635.2	740	2	-2642	-542	5	-7	multi-exon	FALSE	canonical	3	536	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAATAACGAATTGTCAT	NA	False	NA	5	True	AATAAA	-7	NA	46327836	46332347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_46330803_46331389
ENSMUSG00000020397.16_15	chr11	+	944	1	ISM	ENSMUSG00000020397.16	ENSMUST00000020665.13	1193	3	3632	0	932	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAATTGTCATTCTTGGA	NA	False	NA	12	True	AATAAA	-14	NA	46331410	46332354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_46331400_46332400
ENSMUSG00000020397.16_4	chr11	+	1342	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109232.4	2547	3	8	1197	4	-3	multi-exon	FALSE	canonical	3	262	junction_1	137	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACGAATTGTCATTCTT	NA	False	NA	9	True	AATAAA	-11	NA	46327808	46332351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_46328019_46330632_46330803_46331389
ENSMUSG00000020397.16_6	chr11	+	1320	4	NNC	ENSMUSG00000020397.16	novel	2547	3	NA	NA	9	49	at_least_one_novel_splicesite	TRUE	canonical	3	45	junction_2	200.899643271626	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCATCAAGTGTACATGT	NA	False	NA	-13	True	AAAAAG	-23	NA	46327813	46332403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_46328019_46330632_46330652_46330720_46330803_46331389
ENSMUSG00000020397.16_9	chr11	+	1172	2	FSM	ENSMUSG00000020397.16	ENSMUST00000128940.2	702	2	4	-474	4	-3	multi-exon	FALSE	canonical	3	24	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACGAATTGTCATTCTT	NA	False	NA	9	True	AATAAA	-11	NA	46327808	46332351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_46328019_46331389
ENSMUSG00000020400.18_1	chr11	-	2792	18	FSM	ENSMUSG00000020400.18	ENSMUST00000108889.10	2834	18	35	7	0	-3	multi-exon	FALSE	canonical	3	102	junction_1	53.1161161918674	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAACATTTTGTGACTGGC	3617	False	NA	-10	True	CATAAA	-13	NA	54846913	54801617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
ENSMUSG00000020400.18_11	chr11	-	2632	17	NIC	ENSMUSG00000020400.18	novel	2834	18	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	64.3996312101242	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACATTTTGTGACTGGCT	3606	False	NA	-9	True	CATAAA	-14	NA	54846924	54801616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
ENSMUSG00000020400.18_2	chr11	-	2711	18	NIC	ENSMUSG00000020400.18	novel	2834	18	NA	NA	7	-3	combination_of_known_junctions	FALSE	canonical	3	179	junction_17	40.9030417393305	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAACATTTTGTGACTGGC	3624	False	NA	-10	True	CATAAA	-13	NA	54846906	54801617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
ENSMUSG00000020400.18_23	chr11	-	2684	17	NIC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	-120	-3	combination_of_known_junctions	FALSE	canonical	3	13	junction_16	68.3266225109218	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAACATTTTGTGACTGGC	6720	False	NA	-10	True	CATAAA	-13	NA	54853863	54801617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54853658
ENSMUSG00000020400.18_4	chr11	-	2555	17	NIC	ENSMUSG00000020400.18	novel	2834	18	NA	NA	8	-3	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	54.30350903717	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAACATTTTGTGACTGGC	3608	False	NA	-10	True	CATAAA	-13	NA	54846922	54801617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
ENSMUSG00000020402.12_0	chr11	+	1795	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	219	8	-56	-8	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	3640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTCATCCTCTTGTTGT	5350	False	NA	22	True	AATAAA	-18	NA	52251905	52280216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
ENSMUSG00000020402.12_40	chr11	+	1532	6	ISM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	2202	-871	2202	-3	3prime_fragment	FALSE	canonical	3	3141	junction_3	168.597034374867	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCCTCTTGTTGTTTTTG	1542	False	NA	27	True	AATAAA	-23	NA	52267291	52280221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
ENSMUSG00000020402.12_51	chr11	+	698	1	ISM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	27832	8	1495	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTCATCCTCTTGTTGT	3882	False	NA	22	True	AATAAA	-18	NA	52279518	52280216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_52279500_52280200
ENSMUSG00000020407.14_0	chr11	+	1208	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	41	3	0	0	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	1544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGTGTGACTCTGC	NA	False	NA	20	True	AATAAA	-14	NA	9068547	9086164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUSG00000020407.14_1	chr11	+	1255	9	FSM	ENSMUSG00000020407.14	ENSMUST00000101525.9	1157	9	-104	6	-100	0	multi-exon	FALSE	canonical	3	102	junction_1	904.856126339983	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGTGTGACTCTGC	NA	False	NA	20	True	AATAAA	-14	NA	9068002	9086164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_9068163_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUSG00000020407.14_14	chr11	+	1228	9	NIC	ENSMUSG00000020407.14	novel	518	6	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	905.183821110386	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGTGTGACTCTGC	NA	False	NA	20	True	AATAAA	-14	NA	9068734	9086164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_9068868_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUSG00000020407.14_6	chr11	+	2653	8	NIC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	2502	junction_1	170.443718641931	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGTGTGACTCTGC	NA	False	NA	20	True	AATAAA	-14	NA	9068547	9086164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUSG00000020409.11_0	chr11	+	2681	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	-12	956	3	-956	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGTTAAACGTTGGATTT	NA	False	NA	4	True	AATAAA	-15	NA	43324573	43337852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
ENSMUSG00000020409.11_1	chr11	+	2761	17	NIC	ENSMUSG00000020409.11	novel	3625	16	NA	NA	2	-956	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	62.6749738232893	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGTTAAACGTTGGATTT	NA	False	NA	4	True	AATAAA	-15	NA	43324572	43337852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
ENSMUSG00000020409.11_9	chr11	+	1975	15	FSM	ENSMUSG00000020409.11	ENSMUST00000178622.3	3566	15	1	1590	1	1006	multi-exon	FALSE	canonical	3	210	junction_13	21.5180275630477	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATTTGGAAAGTTTGAC	NA	False	NA	20	True	NA	NA	NA	43328170	43337218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
ENSMUSG00000020412.17_0	chr11	+	2644	20	FSM	ENSMUSG00000020412.17	ENSMUST00000070257.14	2650	20	4	2	4	-2	multi-exon	FALSE	canonical	3	209	junction_9	44.9846388062843	474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTCTGTGACATGCTCC	NA	False	NA	6	True	AATAAA	-18	NA	4587750	4633383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4608214_4608326_4609271_4609385_4614228_4614304_4618314_4618423_4618579_4618649_4618861_4618937_4620275_4620463_4622282_4622498_4623327_4623448_4629251_4629346_4629430_4629553_4630082_4630183_4631438_4631519_4632906
ENSMUSG00000020413.12_0	chr11	-	4583	8	NNC	ENSMUSG00000020413.12	novel	4640	8	NA	NA	14	-9	intron_retention	FALSE	canonical	3	72	junction_5	46.4880937137979	126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTATTACTTGGAATTCA	NA	False	NA	83	True	AATAAA	-12	NA	8961146	8943145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957602_8960240_8960418_8960496_8960625_8961058
ENSMUSG00000020413.12_1	chr11	-	4587	8	FSM	ENSMUSG00000020413.12	ENSMUST00000020683.10	4640	8	45	8	14	-8	multi-exon	FALSE	canonical	3	104	junction_5	37.6557988054094	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATTACTTGGAATTCAT	NA	False	NA	84	True	AATAAA	-13	NA	8961146	8943144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
ENSMUSG00000020413.12_11	chr11	-	4278	6	NNC	ENSMUSG00000020413.12	novel	4640	8	NA	NA	10	-13	intron_retention	FALSE	canonical	3	12	junction_5	75.3482581085986	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAACTATTACTTGGAA	NA	False	NA	79	True	AATAAA	-8	NA	8961150	8943149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957602_8961058
ENSMUSG00000020413.12_2	chr11	-	2705	1	ISM	ENSMUSG00000020413.12	ENSMUST00000129115.2	4172	9	15311	8	14829	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATTACTTGGAATTCAT	NA	False	NA	84	True	AATAAA	-13	NA	8945849	8943144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_8943100_8945800
ENSMUSG00000020413.12_8	chr11	-	5008	7	FSM	ENSMUSG00000020413.12	ENSMUST00000152890.8	2792	7	-12	-2204	-12	-15	multi-exon	FALSE	canonical	3	104	junction_5	37.7079419869195	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTTAACTATTACTTGG	NA	False	NA	77	True	AATAAA	-6	NA	8961140	8943151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496
ENSMUSG00000020415.17_1	chr11	-	672	5	FSM	ENSMUSG00000020415.17	ENSMUST00000121638.8	948	5	281	-5	281	0	multi-exon	FALSE	canonical	3	8449	junction_1	727.283129186976	2016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGATTGTGAATACTTA	NA	False	NA	-31	True	AATAAA	-15	NA	43316509	43311095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409
ENSMUSG00000020415.17_3	chr11	-	1368	4	FSM	ENSMUSG00000020415.17	ENSMUST00000117446.8	1674	4	299	7	281	-2	multi-exon	FALSE	canonical	3	9157	junction_2	511.130337802622	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTCAGATTGTGAATACT	NA	False	NA	-33	True	AATAAA	-13	NA	43316509	43311097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_43312093_43313719_43313814_43315545_43315725_43316409
ENSMUSG00000020415.17_8	chr11	-	703	6	FSM	ENSMUSG00000020415.17	ENSMUST00000020687.15	741	6	17	21	-7	-2	multi-exon	FALSE	canonical	3	2427	junction_5	2882.94754721622	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTCAGATTGTGAATACT	NA	False	NA	-33	True	AATAAA	-13	NA	43317061	43311097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317027
ENSMUSG00000020419.12_17	chr11	-	2967	4	ISM	ENSMUSG00000020419.12	ENSMUST00000109948.8	1969	11	26836	-11	13353	11	3prime_fragment	FALSE	canonical	3	54	junction_1	7.11805216802087	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTATGTAACATGGGGTT	NA	False	NA	-9	True	AATAAA	-22	NA	4363909	4295802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212
ENSMUSG00000020419.12_26	chr11	-	1899	10	NIC	ENSMUSG00000020419.12	novel	1343	11	NA	NA	-3	11	combination_of_known_splicesites	FALSE	canonical	3	15	junction_4	73.2602329261589	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTATGTAACATGGGGTT	NA	False	NA	-9	True	AATAAA	-22	NA	4391085	4295802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4371588_4371610_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ENSMUSG00000020419.12_41	chr11	-	2611	5	FSM	ENSMUSG00000020419.12	ENSMUST00000130174.2	583	5	23	-2051	0	1871	multi-exon	FALSE	canonical	3	187	junction_4	8.69985632065266	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTTTTACTGTGTGGTC	NA	False	NA	-9	True	AATAAA	-6	NA	4391082	4372196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ENSMUSG00000020419.12_42	chr11	-	2797	6	NNC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-8	2279	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	73.5129920490249	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTTTGTCCCAGTAAAG	NA	False	NA	NA	False	AAGAAA	-17	NA	4391090	4371788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_4374041_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ENSMUSG00000020419.12_6	chr11	-	1926	11	FSM	ENSMUSG00000020419.12	ENSMUST00000109949.8	1343	11	-3	-580	-3	11	multi-exon	FALSE	canonical	3	44	junction_4	69.004347689113	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTATGTAACATGGGGTT	NA	False	NA	-9	True	AATAAA	-22	NA	4391085	4295802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4370703_4370731_4371588_4371610_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ENSMUSG00000020420.9_0	chr7	+	3337	5	FSM	ENSMUSG00000020420.9	ENSMUST00000205534.2	3511	5	21	153	21	-153	multi-exon	FALSE	canonical	3	36	junction_1	11.4127122105133	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGAGCAGGGACTGAGTGA	3348	False	NA	NA	False	NA	NA	NA	27560030	27580097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27560182_27561961_27562015_27562813_27562941_27564994_27565094_27577190
ENSMUSG00000020420.9_6	chr7	+	2254	1	ISM	ENSMUSG00000020420.9	ENSMUST00000205534.2	3511	5	17834	153	15862	-153	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGAGCAGGGACTGAGTGA	2105	False	NA	NA	False	NA	NA	NA	27577843	27580097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27577800_27580100
ENSMUSG00000020420.9_8	chr7	+	2932	2	ISM	ENSMUSG00000020420.9	ENSMUST00000053722.9	2061	4	3087	-1105	3087	-153	3prime_fragment	FALSE	canonical	3	52	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGAGCAGGGACTGAGTGA	4527	False	NA	NA	False	NA	NA	NA	27565068	27580097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27565094_27577190
ENSMUSG00000020422.15_0	chr11	-	7747	31	FSM	ENSMUSG00000020422.15	ENSMUST00000239091.2	7897	31	140	10	140	-10	multi-exon	FALSE	canonical	3	18	junction_30	12.8998277335612	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTCTAATGAAGCATTT	5215	False	NA	NA	False	AATAAA	-14	NA	8574747	8381661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8565739_8565852_8574416
ENSMUSG00000020422.15_15	chr11	-	7522	31	FSM	ENSMUSG00000020422.15	ENSMUST00000020695.13	7483	31	-48	9	-48	-9	multi-exon	TRUE	canonical	3	26	junction_30	11.9341247409826	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTCTAATGAAGCATTTT	9613	False	NA	NA	False	AATAAA	-15	NA	8614583	8381660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8565739_8565852_8614478
ENSMUSG00000020422.15_5	chr11	-	1639	1	ISM	ENSMUSG00000020422.15	ENSMUST00000239091.2	7897	31	191589	8	35377	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTAATGAAGCATTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	8383298	8381659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_8381700_8383300
ENSMUSG00000020422.15_8	chr11	-	5735	15	ISM	ENSMUSG00000020422.15	ENSMUST00000239091.2	7897	31	131948	8	-24264	-8	3prime_fragment	FALSE	canonical	3	46	junction_5	8.51559194198788	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTAATGAAGCATTTTT	3349	False	NA	NA	False	AATAAA	-16	NA	8442939	8381659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092
ENSMUSG00000020422.15_9	chr11	-	4150	10	ISM	ENSMUSG00000020422.15	ENSMUST00000239091.2	7897	31	173597	9	17385	-9	3prime_fragment	FALSE	canonical	3	46	junction_5	9.43986817233753	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTCTAATGAAGCATTTT	NA	False	NA	NA	False	AATAAA	-15	NA	8401290	8381660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854
ENSMUSG00000020423.7_0	chr1	-	2578	2	FSM	ENSMUSG00000020423.7	ENSMUST00000020692.7	2743	2	5	160	5	-160	multi-exon	FALSE	canonical	3	77	junction_1	0	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGTGTAGAGAAGGTGGA	NA	False	NA	-10	True	AATAAA	-17	NA	134006853	134003067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_134005442_134006649
ENSMUSG00000020423.7_1	chr1	-	1379	1	ISM	ENSMUSG00000020423.7	ENSMUST00000020692.7	2743	2	2412	160	2412	-160	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGTGTAGAGAAGGTGGA	NA	False	NA	-10	True	AATAAA	-17	NA	134004446	134003067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_134003100_134004400
ENSMUSG00000020424.4_1	chr11	+	1568	9	FSM	ENSMUSG00000020424.4	ENSMUST00000020699.4	1574	9	4	2	4	-2	multi-exon	FALSE	canonical	3	115	junction_3	11.4229757506527	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCTGAGTGACAGCTGG	7122	False	NA	15	True	AATAAA	-23	NA	4168228	4172407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842
ENSMUSG00000020424.4_2	chr11	+	1528	10	NNC	ENSMUSG00000020424.4	novel	1574	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	42.6686920815557	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7111	False	NA	17	True	AATAAA	-25	NA	4168217	4172409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842_4172019_4172071
ENSMUSG00000020427.12_0	chr11	-	2435	5	FSM	ENSMUSG00000020427.12	ENSMUST00000020702.11	2421	5	-24	10	2	-10	multi-exon	FALSE	canonical	3	177	junction_4	11.7340317027013	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAAAAGCCCTTTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	7163921	7156095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_7157507_7158368_7158509_7159458_7159579_7160018_7160246_7163384
ENSMUSG00000020430.13_0	chr11	+	2095	15	FSM	ENSMUSG00000020430.13	ENSMUST00000020705.5	2911	15	25	791	-9	-791	multi-exon	FALSE	canonical	3	864	junction_12	97.3847042006336	1639	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCCAATTGGATTCTGTG	NA	False	NA	17	True	NA	NA	NA	3913999	3929213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
ENSMUSG00000020431.6_1	chr11	+	6675	20	FSM	ENSMUSG00000020431.6	ENSMUST00000020706.5	12259	20	-50	5634	-50	-7	multi-exon	FALSE	canonical	3	12	junction_6	3.58667895524228	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAATGTATTATATTGC	NA	False	NA	2	True	GATAAA	-21	NA	7013438	7122872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_7014236_7028887_7029038_7050569_7050689_7059000_7059113_7080275_7080404_7087272_7087432_7088286_7088429_7089033_7089190_7094677_7094873_7095040_7095139_7096508_7096594_7099501_7099592_7099961_7100216_7100776_7100904_7110205_7110323_7111278_7111426_7111851_7111951_7115411_7115527_7117063_7117189_7119412
ENSMUSG00000020431.6_10	chr11	+	3504	1	ISM	ENSMUSG00000020431.6	ENSMUST00000020706.5	12259	20	107303	4211	10910	1416	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGGATATTATGTGGGT	1048	False	NA	NA	False	AATAAA	-14	NA	7120791	7124295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_7120800_7124300
ENSMUSG00000020431.6_4	chr11	+	6713	21	NIC	ENSMUSG00000020431.6	novel	12259	20	NA	NA	-36	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	7.21439533155759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGTATTATATTGCCT	NA	False	NA	4	True	GATAAA	-23	NA	7013452	7122874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_7014236_7028887_7029038_7050569_7050689_7059000_7059113_7080275_7080404_7087272_7087432_7088286_7088429_7089033_7089190_7094677_7094873_7095040_7095139_7096508_7096594_7099501_7099592_7099961_7100216_7100776_7100904_7110205_7110323_7111278_7111426_7111851_7111951_7115411_7115527_7116239_7116290_7117063_7117189_7119412
ENSMUSG00000020431.6_7	chr11	+	2812	13	ISM	ENSMUSG00000020431.6	ENSMUST00000020706.5	12259	20	75560	7875	-20833	-2248	3prime_fragment	FALSE	canonical	3	16	junction_9	3.05845821725043	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTAAGAGCGATTGACCC	NA	False	NA	NA	False	NA	NA	NA	7089048	7120631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_7089190_7094677_7094873_7095040_7095139_7096508_7096594_7099501_7099592_7099961_7100216_7100776_7100904_7110205_7110323_7111278_7111426_7111851_7111951_7115411_7115527_7117063_7117189_7119412
ENSMUSG00000020432.13_0	chr11	-	1910	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109993.9	2027	10	115	2	0	-2	multi-exon	FALSE	canonical	3	40	junction_9	35.4989132158461	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGACGTAGAGTCCTG	NA	False	NA	-13	True	ATTAAA	-15	NA	3882044	3867193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3882012
ENSMUSG00000020432.13_1	chr11	-	1922	10	FSM	ENSMUSG00000020432.13	ENSMUST00000020710.11	1897	10	-26	1	23	-1	multi-exon	FALSE	canonical	3	8	junction_9	45.2714719535328	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGACGTAGAGTCCTGG	NA	False	NA	-12	True	ATTAAA	-16	NA	3882021	3867192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3881975
ENSMUSG00000020432.13_10	chr11	-	1875	9	ISM	ENSMUSG00000020432.13	ENSMUST00000109992.8	1945	10	205	2	205	-2	3prime_fragment	FALSE	canonical	3	136	junction_3	10.0304224736548	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGACGTAGAGTCCTG	NA	False	NA	-13	True	ATTAAA	-15	NA	3881584	3867193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392
ENSMUSG00000020432.13_14	chr11	-	1907	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109991.8	1943	10	34	2	0	-2	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGACGTAGAGTCCTG	NA	False	NA	-13	True	ATTAAA	-15	NA	3882044	3867193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3882012
ENSMUSG00000020432.13_3	chr11	-	1874	10	NNC	ENSMUSG00000020432.13	novel	1949	10	NA	NA	16	-2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	43.1225643434566	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGACGTAGAGTCCTG	NA	False	NA	-13	True	ATTAAA	-15	NA	3882028	3867193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3881975
ENSMUSG00000020432.13_5	chr11	-	1930	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109989.10	1949	10	17	2	17	-2	multi-exon	FALSE	canonical	3	49	junction_9	32.7813557369218	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGACGTAGAGTCCTG	NA	False	NA	-13	True	ATTAAA	-15	NA	3882027	3867193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881975
ENSMUSG00000020437.13_0	chr11	-	3297	22	NIC	ENSMUSG00000020437.13	novel	3307	22	NA	NA	-12	-1	combination_of_known_junctions	TRUE	canonical	1	1	junction_15	5.07539527408542	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGGCTGCCACTGCTTT	6531	False	NA	-1	True	AATAAA	-19	NA	6469516	6456548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_6456833_6456906_6457062_6457868_6457983_6458189_6458295_6459324_6459470_6460147_6460372_6460867_6461076_6461482_6461650_6462160_6462294_6462462_6462538_6464466_6464538_6464751_6464923_6465093_6465209_6465848_6465995_6466078_6466304_6466747_6466865_6467086_6467198_6467569_6467624_6467851_6468018_6468733_6468828_6468978_6469188_6469308
ENSMUSG00000020437.13_2	chr11	-	933	6	ISM	ENSMUSG00000020437.13	ENSMUST00000003459.4	3307	22	10677	5	-1596	-5	3prime_fragment	FALSE	canonical	3	8	junction_3	3.74165738677394	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTGTGGCTGCCACTG	9698	False	NA	-5	True	AATAAA	-15	NA	6460281	6456552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_6456833_6456906_6457062_6457868_6457983_6458189_6458295_6459324_6459470_6460147
ENSMUSG00000020437.13_3	chr11	-	1886	13	ISM	ENSMUSG00000020437.13	ENSMUST00000003459.4	3307	22	5829	3	371	-3	3prime_fragment	FALSE	canonical	2	3	junction_11	5.31507290636732	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGTGGCTGCCACTGCT	7106	False	NA	-3	True	AATAAA	-17	NA	6465129	6456550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_6456833_6456906_6457062_6457868_6457983_6458189_6458295_6459324_6459470_6460147_6460372_6460867_6461076_6461482_6461650_6462160_6462294_6462462_6462538_6464466_6464538_6464751_6464923_6465093
ENSMUSG00000020439.18_0	chr11	-	3300	21	FSM	ENSMUSG00000020439.18	ENSMUST00000020721.15	3335	21	31	4	-9	-4	multi-exon	FALSE	canonical	3	70	junction_20	9.90908673894825	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGATCCTGACTTTTCTCT	8168	False	NA	-10	True	GATAAA	-13	NA	3489261	3467526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
ENSMUSG00000020439.18_12	chr11	-	3363	22	FSM	ENSMUSG00000020439.18	ENSMUST00000170588.8	3386	22	19	4	19	-4	multi-exon	FALSE	canonical	2	9	junction_21	27.3941583060523	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGATCCTGACTTTTCTCT	8156	False	NA	-10	True	GATAAA	-13	NA	3489273	3467526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3487554_3487606_3489111
ENSMUSG00000020439.18_2	chr11	-	3003	20	ISM	ENSMUSG00000020439.18	ENSMUST00000020721.15	3335	21	30	3226	-10	-211	5prime_fragment	FALSE	canonical	3	70	junction_19	10.1643012249038	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATGTCGCCTCTCCCAC	8167	False	NA	NA	False	AAAAAG	-30	NA	3489262	3470748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
ENSMUSG00000020439.18_23	chr11	-	3094	21	NIC	ENSMUSG00000020439.18	novel	3335	21	NA	NA	-3	-208	combination_of_known_junctions	FALSE	canonical	3	19	junction_19	25.1584975704035	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCGCCTCTCCCACCTG	8187	False	NA	NA	False	AAAAAG	-33	NA	3489242	3470745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3487635_3487744_3489111
ENSMUSG00000020439.18_3	chr11	-	3398	22	NIC	ENSMUSG00000020439.18	novel	3348	22	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	19	junction_20	24.580101828424	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGATCCTGACTTTTCTCT	8178	False	NA	-10	True	GATAAA	-13	NA	3489251	3467526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3487635_3487744_3489111
ENSMUSG00000020440.14_0	chr6	+	1119	6	FSM	ENSMUSG00000020440.14	ENSMUST00000020717.12	1116	6	-4	1	-4	-1	multi-exon	TRUE	canonical	3	1725	junction_4	143.712769091685	1114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCGGTGTTGTCTGTTGCC	-35	True	NA	16	True	AATAAA	-16	NA	28423554	28426600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_28423755_28424288_28424370_28424720_28424831_28425171_28425244_28425737_28425864_28426070
ENSMUSG00000020441.7_1	chr11	+	1232	7	FSM	ENSMUSG00000020441.7	ENSMUST00000020719.7	1285	7	47	6	47	-6	multi-exon	FALSE	canonical	3	128	junction_6	17.464249196573	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTAGAGTGTATATTAT	NA	False	NA	1	True	AGTAAA	-9	NA	59099193	59101558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59099500_59099645_59099692_59099794_59099878_59099953_59100027_59100133_59100220_59100798_59100931_59101052
ENSMUSG00000020441.7_2	chr11	+	1308	6	NIC	ENSMUSG00000020441.7	novel	1285	7	NA	NA	47	-6	intron_retention	FALSE	canonical	3	128	junction_5	19.131126469709	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTAGAGTGTATATTAT	NA	False	NA	1	True	AGTAAA	-9	NA	59099193	59101558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_59099500_59099645_59099692_59099794_59100027_59100133_59100220_59100798_59100931_59101052
ENSMUSG00000020441.7_4	chr11	+	1446	5	NIC	ENSMUSG00000020441.7	novel	1285	7	NA	NA	16	-6	intron_retention	FALSE	canonical	3	128	junction_4	18.8745860881769	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTAGAGTGTATATTAT	NA	False	NA	1	True	AGTAAA	-9	NA	59099162	59101558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_59099500_59099645_59099692_59099794_59100220_59100798_59100931_59101052
ENSMUSG00000020441.7_6	chr11	+	2195	6	NIC	ENSMUSG00000020441.7	novel	1285	7	NA	NA	23	826	intron_retention	FALSE	canonical	3	128	junction_5	16.9776323437634	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAGATAAATTTAACAGCT	NA	False	NA	NA	False	AATAAA	-18	NA	59099169	59102390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_59099500_59099645_59099692_59099794_59099878_59099953_59100220_59100798_59100931_59101052
ENSMUSG00000020444.20_0	chr11	-	930	8	FSM	ENSMUSG00000020444.20	ENSMUST00000170202.9	1078	8	146	2	6	-2	multi-exon	FALSE	canonical	3	619	junction_7	90.3745042609262	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATAGTGTCACAGCCCT	1616	False	NA	-22	True	AATAAA	-11	NA	59082632	59074702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
ENSMUSG00000020444.20_6	chr11	-	875	7	ISM	ENSMUSG00000020444.20	ENSMUST00000170895.3	743	8	853	-170	853	-2	3prime_fragment	FALSE	canonical	3	680	junction_6	63.6407015116025	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATAGTGTCACAGCCCT	6534	False	NA	-22	True	AATAAA	-11	NA	59077714	59074702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599
ENSMUSG00000020447.6_0	chr11	-	2061	11	ISM	ENSMUSG00000020447.6	ENSMUST00000004505.3	4467	19	7837	4	7837	-4	3prime_fragment	FALSE	canonical	0	0	junction_2	1.3	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATTTCGAGTCTGAG	759	False	NA	NA	False	NA	NA	NA	6172306	6161016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_6161661_6164010_6164174_6164259_6164374_6164525_6164758_6165020_6165172_6167477_6167534_6167706_6167834_6168233_6168362_6168551_6168743_6171824_6171915_6172141
ENSMUSG00000020448.17_0	chr11	-	2740	7	FSM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	43	4	14	-4	multi-exon	FALSE	canonical	3	133	junction_2	17.6391294821737	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTGTGAGTGTGGAGCT	6858	False	NA	-9	True	ATTAAA	-10	NA	3402320	3365985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3402208
ENSMUSG00000020448.17_1	chr11	-	1729	1	ISM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	34651	2	34622	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGAGTGTGGAGCTTG	3646	False	NA	-7	True	ATTAAA	-12	NA	3367712	3365983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_3366000_3367700
ENSMUSG00000020448.17_4	chr11	-	2723	6	NIC	ENSMUSG00000020448.17	novel	2787	7	NA	NA	15	-1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	55.8161267018771	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGAGTGTGGAGCTTGT	6859	False	NA	-6	True	ATTAAA	-13	NA	3402319	3365982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3382399_3382621_3402208
ENSMUSG00000020448.17_6	chr11	-	2583	6	ISM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	19791	1	19762	-1	3prime_fragment	FALSE	canonical	3	133	junction_2	15.3961034031342	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGAGTGTGGAGCTTGT	NA	False	NA	-6	True	ATTAAA	-13	NA	3382572	3365982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399
ENSMUSG00000020451.18_1	chr11	-	3481	15	FSM	ENSMUSG00000020451.18	ENSMUST00000101642.10	3693	15	5	207	5	-207	multi-exon	FALSE	canonical	3	120	junction_14	38.572023804931	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGAAGTCTTTGGCCACT	9819	False	NA	-23	True	AATGAA	-8	NA	3321371	3294462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3320968
ENSMUSG00000020451.18_13	chr11	-	1905	5	ISM	ENSMUSG00000020451.18	ENSMUST00000110029.9	2939	12	7454	207	4130	-207	3prime_fragment	FALSE	canonical	3	202	junction_1	18.3354165483089	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGAAGTCTTTGGCCACT	NA	False	NA	-23	True	AATGAA	-8	NA	3298687	3294462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593
ENSMUSG00000020451.18_19	chr11	-	4380	14	NIC	ENSMUSG00000020451.18	novel	3693	15	NA	NA	5	-207	intron_retention	FALSE	canonical	3	120	junction_13	39.3946802043419	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGAAGTCTTTGGCCACT	9819	False	NA	-23	True	AATGAA	-8	NA	3321371	3294462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3320968
ENSMUSG00000020451.18_4	chr11	-	3286	16	FSM	ENSMUSG00000020451.18	ENSMUST00000101638.4	3514	16	25	203	25	-203	multi-exon	FALSE	canonical	3	97	junction_14	50.0611182012104	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTCTTTGGCCACTTTTC	NA	False	NA	-19	True	AATGAA	-12	NA	3359149	3294458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3342916_3343017_3359045
ENSMUSG00000020451.18_9	chr11	-	1072	1	ISM	ENSMUSG00000020451.18	ENSMUST00000110029.9	2939	12	10806	8	7482	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAGAGATGACAGAGAG	NA	False	NA	-14	True	AATAAA	-11	NA	3295335	3294263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_3294300_3295300
ENSMUSG00000020453.18_13	chr11	+	3290	5	FSM	ENSMUSG00000020453.18	ENSMUST00000093402.12	3173	5	-120	3	-102	-3	multi-exon	FALSE	canonical	0	0	junction_4	189.564467925822	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATCTCTGCCTGCTCCCCC	6350	False	NA	11	True	ATTAAA	-13	NA	3240336	3259080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3256287_3256361_3257647
ENSMUSG00000020453.18_8	chr11	+	2637	3	FSM	ENSMUSG00000020453.18	ENSMUST00000094471.10	2930	3	289	4	-157	-4	multi-exon	TRUE	canonical	3	69	junction_2	176	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTGAGGCTTTGTGTG	6295	False	NA	NA	False	GATAAA	-13	NA	3240281	3245425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3241885_3243279_3243344_3244455
ENSMUSG00000020453.18_9	chr11	+	3245	4	FSM	ENSMUSG00000020453.18	ENSMUST00000057089.13	3118	4	-130	3	-130	-3	multi-exon	FALSE	canonical	3	276	junction_3	67.6576348652209	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATCTCTGCCTGCTCCCCC	6322	False	NA	11	True	ATTAAA	-13	NA	3240308	3259080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3257647
ENSMUSG00000020454.18_13	chr11	+	3573	19	FSM	ENSMUSG00000020454.18	ENSMUST00000110049.8	3614	19	34	7	8	0	multi-exon	TRUE	canonical	3	81	junction_10	64.4808326386825	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATATGGCTGGTACTGT	3878	False	NA	7	True	ATTAAA	-23	NA	3152696	3194581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3152798_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3183987_3184060_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
ENSMUSG00000020454.18_5	chr11	+	3499	18	NIC	ENSMUSG00000020454.18	novel	3614	19	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	104	junction_1	53.324624433129	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATATGGCTGGTACTGT	3880	False	NA	7	True	ATTAAA	-23	NA	3152698	3194581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_3152798_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
ENSMUSG00000020454.18_7	chr11	+	3748	19	NIC	ENSMUSG00000020454.18	novel	3614	19	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_1	67.055647611094	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATATGGCTGGTACTGT	3898	False	NA	7	True	ATTAAA	-23	NA	3152716	3194581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_3152993_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3183987_3184060_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
ENSMUSG00000020454.18_8	chr11	+	3668	18	NIC	ENSMUSG00000020454.18	novel	3614	19	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_1	56.8118974819688	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATATGGCTGGTACTGT	3906	False	NA	7	True	ATTAAA	-23	NA	3152724	3194581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_3152993_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
ENSMUSG00000020455.17_1	chr11	+	2239	6	FSM	ENSMUSG00000020455.17	ENSMUST00000093061.7	2251	6	10	2	10	0	multi-exon	FALSE	canonical	2	58	junction_2	16.6781293915115	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTCTCTGCTTATCCT	1699	False	NA	12	True	AATAAA	-12	NA	58868951	58882281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58879550_58879574_58879654_58879756_58881012
ENSMUSG00000020455.17_2	chr11	+	3497	5	ISM	ENSMUSG00000020455.17	ENSMUST00000093061.7	2251	6	11	0	11	0	intron_retention	FALSE	canonical	2	58	junction_2	15.6264999280069	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCTCTGCTTATCCTGT	1700	False	NA	14	True	AATAAA	-14	NA	58868952	58882283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_58869471_58872066_58872163_58872818_58873050_58879550_58879574_58879654
ENSMUSG00000020455.17_27	chr11	+	2469	1	ISM	ENSMUSG00000020455.17	ENSMUST00000108809.8	3522	5	10891	3	10868	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCATGTTCTCTGCTTAT	NA	False	NA	9	True	AATAAA	-9	NA	58879809	58882278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_58879800_58882300
ENSMUSG00000020455.17_29	chr11	+	5121	2	ISM	ENSMUSG00000020455.17	ENSMUST00000093061.7	2251	6	8140	0	8140	0	intron_retention	FALSE	canonical	3	100	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCTCTGCTTATCCTGT	9829	False	NA	14	True	AATAAA	-14	NA	58877081	58882283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_58879574_58879654
ENSMUSG00000020456.18_0	chr11	+	4129	23	FSM	ENSMUSG00000020456.18	ENSMUST00000003461.15	4127	23	-4	2	-4	-2	multi-exon	FALSE	canonical	3	535	junction_8	60.360778272973	1161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTGCCTGCTGTCGTGT	NA	False	NA	12	True	CATAAA	-16	NA	6241628	6306640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ENSMUSG00000020456.18_1	chr11	+	4117	23	NIC	ENSMUSG00000020456.18	novel	4075	24	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	61	junction_4	180.942853176638	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTGCCTGCTGTCGTGT	NA	False	NA	12	True	CATAAA	-16	NA	6241628	6306640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_6241694_6246951_6247200_6263787_6263980_6266764_6266856_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ENSMUSG00000020456.18_35	chr11	+	4365	23	NIC	ENSMUSG00000020456.18	novel	702	3	NA	NA	7	-1	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	139.064294839378	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGCCTGCTGTCGTGTG	NA	False	NA	13	True	CATAAA	-17	NA	6241991	6306641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_6242292_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ENSMUSG00000020457.14_2	chr11	-	1525	9	FSM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	6	15	5	-15	multi-exon	FALSE	canonical	3	1733	junction_5	106.427719016241	1684	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCATGTGTCGTTATTCAT	NA	False	NA	-16	True	TATAAA	-19	NA	3216387	3199921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
ENSMUSG00000020458.17_1	chr11	+	4585	9	FSM	ENSMUSG00000020458.17	ENSMUST00000102843.10	4618	9	28	5	27	-5	multi-exon	FALSE	canonical	0	0	junction_2	355.342066711781	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTACCTTTGTGTTTAGTG	NA	False	NA	9	True	AATAAA	-9	NA	29642974	29692911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_29643694_29655534_29655592_29656409_29658771_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ENSMUSG00000020458.17_2	chr11	+	2169	7	FSM	ENSMUSG00000020458.17	ENSMUST00000078830.11	3615	7	28	1418	27	-3	multi-exon	FALSE	canonical	3	504	junction_1	153.756029692063	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTTTGTGTTTAGTGTT	NA	False	NA	11	True	AATAAA	-11	NA	29642974	29692913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_29643694_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ENSMUSG00000020458.17_38	chr11	+	2867	7	ISM	ENSMUSG00000020458.17	ENSMUST00000102841.8	4060	9	13578	5	-11211	-5	3prime_fragment	FALSE	canonical	3	386	junction_1	197.502250338797	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTACCTTTGTGTTTAGTG	NA	False	NA	9	True	AATAAA	-9	NA	29657351	29692911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_29658771_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ENSMUSG00000020458.17_49	chr11	+	786	1	ISM	ENSMUSG00000020458.17	ENSMUST00000102843.10	4618	9	49183	1	1132	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGTGTTTAGTGTTTT	NA	False	NA	13	True	AATAAA	-13	NA	29692129	29692915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_29692100_29692900
ENSMUSG00000020459.15_0	chr11	+	2936	14	FSM	ENSMUSG00000020459.15	ENSMUST00000093239.11	2741	14	2	-197	2	166	multi-exon	FALSE	canonical	3	166	junction_5	30.3862706462472	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATGGTAAATATTTT	NA	False	NA	-1	True	NA	NA	NA	29476458	29495445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
ENSMUSG00000020459.15_1	chr11	+	2739	15	NIC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	1	166	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	61.3790913678498	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATGGTAAATATTTT	NA	False	NA	-1	True	NA	NA	NA	29476450	29495445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_29476488_29476692_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
ENSMUSG00000020459.15_15	chr11	+	2817	13	NIC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	9	166	intron_retention	FALSE	canonical	3	11	junction_2	65.9917924189567	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATGGTAAATATTTT	NA	False	NA	-1	True	NA	NA	NA	29476465	29495445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_29476844_29479928_29480155_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
ENSMUSG00000020459.15_2	chr11	+	2619	14	FSM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	-28	-166	12	166	multi-exon	FALSE	canonical	3	41	junction_1	55.902387454177	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATGGTAAATATTTT	NA	False	NA	-1	True	NA	NA	NA	29476419	29495445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_29476488_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
ENSMUSG00000020460.16_1	chr11	-	609	5	FSM	ENSMUSG00000020460.16	ENSMUST00000102844.4	637	5	27	1	27	-1	multi-exon	FALSE	canonical	0	0	junction_3	5966.04937856703	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGTATTGTGCTTTATT	NA	False	NA	-32	True	AATAAA	-15	NA	29497833	29495846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680
ENSMUSG00000020460.16_3	chr11	-	544	6	FSM	ENSMUSG00000020460.16	ENSMUST00000102845.11	791	6	246	1	-3	-1	multi-exon	FALSE	canonical	0	0	junction_3	5362.30439270282	2248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGTATTGTGCTTTATT	NA	False	NA	-32	True	AATAAA	-15	NA	29497863	29495846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680_29497746_29497840
ENSMUSG00000020462.15_0	chr11	-	1258	10	FSM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	116	290	-5	-290	multi-exon	FALSE	canonical	3	210	junction_4	19.5037191768236	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGACTGTTAGTTTCAAG	NA	False	NA	NA	False	AATAAA	-17	NA	29197293	29171821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_29171986_29172433_29172584_29172743_29172884_29175856_29175960_29179907_29179960_29180585_29180674_29184357_29184473_29194058_29194161_29195085_29195151_29197014
ENSMUSG00000020463.16_0	chr11	+	5019	16	FSM	ENSMUSG00000020463.16	ENSMUST00000020755.12	5125	16	86	20	86	-20	multi-exon	FALSE	canonical	3	241	junction_14	38.0796825383593	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGTTATGTGAAACAGA	NA	False	NA	3	True	AATAAA	-15	NA	29122975	29170777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161606_29161792_29163593_29163797_29168455
ENSMUSG00000020463.16_1	chr11	+	2325	12	FSM	ENSMUSG00000020463.16	ENSMUST00000102856.9	2410	12	77	8	77	-8	multi-exon	FALSE	canonical	3	259	junction_3	30.8097333552481	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCACTTATTTTTTAT	NA	False	NA	NA	False	AATAAA	-11	NA	29122966	29159633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316
ENSMUSG00000020463.16_4	chr11	+	4225	16	NNC	ENSMUSG00000020463.16	novel	5125	16	NA	NA	84	-795	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_13	76.4560585492666	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATTGAGGCTTCTGTTTG	NA	False	NA	10	True	ATTAAA	-19	NA	29122973	29170002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161627_29161792_29163593_29163797_29168455
ENSMUSG00000020463.16_64	chr11	+	1863	1	ISM	ENSMUSG00000020463.16	ENSMUST00000020755.12	5125	16	46033	12	5299	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGAAACAGATTCACGTG	NA	False	NA	11	True	AATAAA	-23	NA	29168922	29170785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_29168900_29170800
ENSMUSG00000020464.16_0	chr11	+	2552	28	FSM	ENSMUSG00000020464.16	ENSMUST00000020756.9	2707	28	-1	156	-1	-8	multi-exon	FALSE	canonical	0	0	junction_19	125.489275633577	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAGCTATTTTTATA	NA	False	NA	0	True	AATAAA	-12	NA	29080746	29111672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
ENSMUSG00000020464.16_22	chr11	+	2545	28	NIC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	-1	-11	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	164.041623745279	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAAATAAGCTATTTTT	NA	False	NA	-3	True	AATAAA	-9	NA	29080746	29111669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_29080919_29082844_29082906_29083855_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
ENSMUSG00000020467.16_0	chr11	+	2010	11	FSM	ENSMUSG00000020467.16	ENSMUST00000020759.12	2037	11	17	10	17	-10	multi-exon	FALSE	canonical	0	0	junction_10	1.00498756211209	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAGAATCTGCCATGT	NA	False	NA	NA	False	AATAAA	-16	NA	28803220	28876733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_28803325_28804464_28804555_28817465_28817515_28817652_28818040_28860609_28860733_28864587_28864708_28865660_28865781_28866849_28866970_28871402_28871527_28871610_28871807_28876156
ENSMUSG00000020469.9_0	chr11	-	713	6	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	91	7	91	-7	3prime_fragment	FALSE	canonical	3	38	junction_4	23.9115035077261	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGAACTGAGGTGTTGGC	NA	False	NA	-5	True	AATAAA	-13	NA	5848691	5846643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425
ENSMUSG00000020469.9_1	chr11	-	459	4	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	758	7	758	-7	3prime_fragment	FALSE	canonical	3	77	junction_3	8.80656320908194	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGAACTGAGGTGTTGGC	NA	False	NA	-5	True	AATAAA	-13	NA	5848024	5846643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831
ENSMUSG00000020471.12_0	chr11	-	1561	11	FSM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	74	11	-6	-3	multi-exon	FALSE	canonical	3	869	junction_10	541.870242770352	2013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGTCTGAACCTTGTTCA	9579	False	NA	-9	True	AATAAA	-14	NA	5828218	5822190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
ENSMUSG00000020471.12_2	chr11	-	1533	10	ISM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	1304	11	-224	-3	3prime_fragment	FALSE	canonical	3	2224	junction_4	233.005219037612	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGTCTGAACCTTGTTCA	NA	False	NA	-9	True	AATAAA	-14	NA	5826988	5822190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712
ENSMUSG00000020472.15_0	chr11	-	3639	10	FSM	ENSMUSG00000020472.15	ENSMUST00000013262.15	4064	10	421	4	-3	-4	multi-exon	FALSE	canonical	3	74	junction_1	26.5236907846458	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATAGTTTTCTTCTATCC	NA	False	NA	-5	True	AATAAA	-21	NA	59397049	59376349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394637_59394973_59395081_59396653_59396789_59396989
ENSMUSG00000020472.15_1	chr11	-	3635	10	NNC	ENSMUSG00000020472.15	novel	4064	10	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	32.4200821774878	109	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATAGTTTTCTTCTATCC	NA	False	NA	-5	True	AATAAA	-21	NA	59397048	59376349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_59378641_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394637_59394973_59395081_59396653_59396789_59396989
ENSMUSG00000020472.15_5	chr11	-	1791	1	ISM	ENSMUSG00000020472.15	ENSMUST00000013262.15	4064	10	19330	4	18906	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATAGTTTTCTTCTATCC	NA	False	NA	-5	True	AATAAA	-21	NA	59378140	59376349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_59376300_59378100
ENSMUSG00000020472.15_6	chr11	-	3054	7	ISM	ENSMUSG00000020472.15	ENSMUST00000013262.15	4064	10	3111	10	2687	-10	3prime_fragment	FALSE	canonical	3	74	junction_1	28.9463104538193	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCTAAATAGTTTTCTT	NA	False	NA	-11	True	AATAAA	-15	NA	59394359	59376355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209
ENSMUSG00000020472.15_7	chr11	-	3587	10	NIC	ENSMUSG00000020472.15	novel	4064	10	NA	NA	-2	-8	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	43.6750062717741	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAAATAGTTTTCTTCT	NA	False	NA	-9	True	AATAAA	-17	NA	59397048	59376353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394590_59394973_59395081_59396653_59396789_59396989
ENSMUSG00000020472.15_8	chr11	-	3579	9	ISM	ENSMUSG00000020472.15	ENSMUST00000013262.15	4064	10	681	5	257	-5	3prime_fragment	FALSE	canonical	3	74	junction_1	27.6541136180497	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAATAGTTTTCTTCTATC	NA	False	NA	-6	True	AATAAA	-20	NA	59396789	59376350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394637_59394973_59395081_59396653
ENSMUSG00000020473.14_0	chr11	+	3863	21	NNC	ENSMUSG00000020473.14	novel	3831	21	NA	NA	-30	-1	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_16	4.12886182863995	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTCCCCTGTTCTGACTG	8642	False	NA	7	True	AATAAA	-17	NA	5811916	5822087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_5812399_5813938_5814278_5814823_5814896_5815016_5815089_5815199_5815311_5815384_5815454_5816432_5816511_5816919_5817001_5817094_5817152_5817639_5817750_5817819_5817960_5818296_5818382_5818474_5818620_5818730_5818817_5819064_5819189_5819413_5819611_5819706_5819887_5820075_5820428_5820513_5820654_5820752_5820853_5821244
ENSMUSG00000020473.14_2	chr11	+	3862	21	FSM	ENSMUSG00000020473.14	ENSMUST00000102923.10	3831	21	-32	1	-32	-1	multi-exon	FALSE	canonical	3	11	junction_16	4.12886182863995	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTCCCCTGTTCTGACTG	8640	False	NA	7	True	AATAAA	-17	NA	5811914	5822087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_5812399_5813938_5814278_5814823_5814896_5815016_5815089_5815199_5815311_5815384_5815454_5816432_5816511_5816919_5817001_5817097_5817152_5817639_5817750_5817819_5817960_5818296_5818382_5818474_5818620_5818730_5818817_5819064_5819189_5819413_5819611_5819706_5819887_5820075_5820428_5820513_5820654_5820752_5820853_5821244
ENSMUSG00000020474.12_0	chr11	-	2705	11	FSM	ENSMUSG00000020474.12	ENSMUST00000020767.4	2924	11	218	1	-5	-1	multi-exon	FALSE	canonical	3	32	junction_5	4.04969134626332	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTATAGTTTTACAAGTTT	598	False	NA	NA	False	AATAAA	-17	NA	5787798	5777861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5779116_5779310_5779395_5779476_5779726_5779825_5779929_5780067_5780201_5781659_5781781_5784741_5784814_5785415_5785587_5785700_5785800_5786193_5786375_5787560
ENSMUSG00000020474.12_11	chr11	-	1922	6	ISM	ENSMUSG00000020474.12	ENSMUST00000020767.4	2924	11	6258	1	-1558	-1	3prime_fragment	FALSE	canonical	3	32	junction_5	3.65513337649941	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTATAGTTTTACAAGTTT	6638	False	NA	NA	False	AATAAA	-17	NA	5781758	5777861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5779116_5779310_5779395_5779476_5779726_5779825_5779929_5780067_5780201_5781659
ENSMUSG00000020474.12_2	chr11	-	2691	11	NIC	ENSMUSG00000020474.12	novel	2924	11	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	12.1227059685534	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAGTTTTACAAGTTTT	614	False	NA	NA	False	AATAAA	-18	NA	5787782	5777860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_5779116_5779310_5779395_5779476_5779726_5779825_5779929_5780067_5780201_5781659_5781781_5784741_5784814_5785415_5785516_5785628_5785800_5786193_5786375_5787560
ENSMUSG00000020474.12_23	chr11	-	1431	2	ISM	ENSMUSG00000020474.12	ENSMUST00000109837.8	2697	11	8301	3	712	-2	intron_retention	FALSE	canonical	3	41	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTATAGTTTTACAAGTT	8908	False	NA	NA	False	AATAAA	-16	NA	5779488	5777862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5779116_5779310
ENSMUSG00000020474.12_25	chr11	-	2283	9	ISM	ENSMUSG00000020474.12	ENSMUST00000020767.4	2924	11	2221	0	690	0	3prime_fragment	FALSE	canonical	3	32	junction_5	3.68908864084343	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAGTTTTACAAGTTTT	2601	False	NA	NA	False	AATAAA	-18	NA	5785795	5777860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5779116_5779310_5779395_5779476_5779726_5779825_5779929_5780067_5780201_5781659_5781781_5784741_5784814_5785415_5785587_5785700
ENSMUSG00000020474.12_4	chr11	-	397	1	ISM	ENSMUSG00000020474.12	ENSMUST00000109837.8	2697	11	9532	1	1943	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAGTTTTACAAGTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	5778257	5777860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5777900_5778300
ENSMUSG00000020475.4_0	chr11	-	819	3	FSM	ENSMUSG00000020475.4	ENSMUST00000020768.4	840	3	15	6	15	-6	multi-exon	FALSE	canonical	3	39	junction_1	6	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACAGCGCCACGTTTCAT	8663	False	NA	NA	False	AATAAA	-9	NA	5753718	5751645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5751840_5752998_5753180_5753274
ENSMUSG00000020476.15_0	chr11	+	2041	13	FSM	ENSMUSG00000020476.15	ENSMUST00000020769.14	1638	13	-18	-385	16	44	multi-exon	FALSE	canonical	3	30	junction_7	109.921057531707	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGTGAGGCCCACAGCCCA	NA	False	NA	15	True	GATAAA	-15	NA	5738503	5750673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747274_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ENSMUSG00000020476.15_1	chr11	+	1983	13	FSM	ENSMUSG00000020476.15	ENSMUST00000109845.8	2001	13	16	2	16	-2	multi-exon	FALSE	canonical	3	305	junction_7	40.5239126936183	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCTGGCTCAGCCCATCC	NA	False	NA	-31	True	NA	NA	NA	5738503	5750627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747286_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ENSMUSG00000020476.15_2	chr11	+	2044	13	FSM	ENSMUSG00000020476.15	ENSMUST00000102928.5	2295	13	-26	277	16	56	multi-exon	FALSE	canonical	3	125	junction_7	84.6740072277201	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCATCTGCCCCGCTT	NA	False	NA	27	True	GATAAA	-27	NA	5738503	5750685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747283_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ENSMUSG00000020477.11_1	chr11	-	650	4	FSM	ENSMUSG00000020477.11	ENSMUST00000154330.2	995	4	4	341	4	2	multi-exon	FALSE	canonical	3	1753	junction_3	448.803099612984	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGGGTCTCTCTCTCTT	NA	False	NA	-23	True	AATAAA	-20	NA	5657683	5654323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5654733_5657297_5657410_5657486_5657556_5657623
ENSMUSG00000020477.11_3	chr11	-	722	3	FSM	ENSMUSG00000020477.11	ENSMUST00000132874.2	503	3	12	-231	9	2	multi-exon	FALSE	canonical	3	1753	junction_2	547.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGGGTCTCTCTCTCTT	NA	False	NA	-23	True	AATAAA	-20	NA	5657678	5654323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5654733_5657297_5657556_5657623
ENSMUSG00000020477.11_4	chr11	-	713	3	FSM	ENSMUSG00000020477.11	ENSMUST00000020770.11	700	3	-11	-2	9	2	multi-exon	FALSE	canonical	3	2385	junction_2	231.5	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGGGTCTCTCTCTCTT	NA	False	NA	-23	True	AATAAA	-20	NA	5657678	5654323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5654733_5657297_5657410_5657486
ENSMUSG00000020477.11_8	chr11	-	518	2	FSM	ENSMUSG00000020477.11	ENSMUST00000123697.2	418	2	236	-336	236	2	multi-exon	FALSE	canonical	3	2848	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGGGTCTCTCTCTCTT	NA	False	NA	-23	True	AATAAA	-20	NA	5657406	5654323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5654733_5657297
ENSMUSG00000020482.5_0	chr11	-	3381	5	FSM	ENSMUSG00000020482.5	ENSMUST00000020776.5	3372	5	-13	4	-13	-4	multi-exon	FALSE	canonical	3	395	junction_1	36.1939221417077	836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTATCTGTAATCCTGT	NA	False	NA	-6	True	AATAAA	-20	NA	5492200	5478890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5481534_5484242_5484381_5484764_5484990_5491372_5491424_5491876
ENSMUSG00000020482.5_3	chr11	-	2116	1	ISM	ENSMUSG00000020482.5	ENSMUST00000020776.5	3372	5	11182	3	11182	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTATCTGTAATCCTGTA	NA	False	NA	-5	True	AATAAA	-21	NA	5481005	5478889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5478900_5481000
ENSMUSG00000020483.15_0	chr11	-	2432	3	FSM	ENSMUSG00000020483.15	ENSMUST00000020775.9	2476	3	32	12	32	-12	multi-exon	FALSE	canonical	3	615	junction_2	8	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCACTTCTGAGCTGTTGG	NA	False	NA	-12	True	ATTAAA	-10	NA	87878327	87870362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_87872397_87874697_87874837_87878068
ENSMUSG00000020483.15_2	chr11	-	986	1	ISM	ENSMUSG00000020483.15	ENSMUST00000178105.3	2187	2	3494	8	3494	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGAGCTGTTGGGGTT	4185	False	NA	-8	True	ATTAAA	-14	NA	87871344	87870358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_87870400_87871300
ENSMUSG00000020483.15_8	chr11	-	3939	2	FSM	ENSMUSG00000020483.15	ENSMUST00000178105.3	2187	2	-3490	1738	31	-1108	multi-exon	FALSE	canonical	3	631	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTAGTTGCCTGGG	NA	False	NA	-24	True	AGTAAA	-16	NA	87878328	87872088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_87872397_87874697
ENSMUSG00000020484.20_2	chr11	+	1810	5	FSM	ENSMUSG00000020484.20	ENSMUST00000063084.16	2129	5	300	19	-36	-19	multi-exon	FALSE	canonical	3	876	junction_4	35.2801289680182	1053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGCAACACAGCG	NA	False	NA	15	True	TTTAAA	-16	NA	5470958	5475874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_5471201_5471922_5472020_5473332_5473468_5474238_5474385_5474684
ENSMUSG00000020484.20_3	chr11	+	2581	4	NIC	ENSMUSG00000020484.20	novel	2129	5	NA	NA	-36	-19	intron_retention	FALSE	canonical	3	876	junction_3	39.9110121255887	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGCAACACAGCG	NA	False	NA	15	True	TTTAAA	-16	NA	5470958	5475874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_5471201_5471922_5472020_5473332_5474385_5474684
ENSMUSG00000020485.15_0	chr11	+	692	5	FSM	ENSMUSG00000020485.15	ENSMUST00000093955.12	706	5	13	1	12	-1	multi-exon	FALSE	canonical	3	512	junction_3	25.7972866790289	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAAGGGTACTGAGGCC	NA	False	NA	1	True	AATAAA	-18	NA	87628390	87634442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87628495_87628992_87629100_87633621_87633678_87633883_87633938_87634071
ENSMUSG00000020485.15_7	chr11	+	2382	3	ISM	ENSMUSG00000020485.15	ENSMUST00000093955.12	706	5	3338	6	3337	-6	3prime_fragment	FALSE	canonical	3	512	junction_1	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATACTTAAAGGGTACTG	NA	False	NA	-4	True	AATAAA	-13	NA	87631715	87634437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_87633678_87633883_87633938_87634071
ENSMUSG00000020491.16_2	chr11	+	3759	5	FSM	ENSMUSG00000020491.16	ENSMUST00000073924.10	3866	5	21	86	21	-86	multi-exon	FALSE	canonical	3	20	junction_3	8.74642784226795	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGTGTGTTCCATAT	NA	False	NA	NA	False	ATTAAA	-16	NA	58758062	58774028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58758136_58759640_58759833_58767519_58767647_58769601_58769695_58770754
ENSMUSG00000020491.16_3	chr11	+	3806	5	NNC	ENSMUSG00000020491.16	novel	3866	5	NA	NA	20	-85	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_3	14.8492424049175	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTGTGTTCCATATG	NA	False	NA	NA	False	ATTAAA	-17	NA	58758061	58774029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_58758136_58759640_58759833_58767519_58767692_58769601_58769695_58770754
ENSMUSG00000020491.16_9	chr11	+	2784	1	ISM	ENSMUSG00000020491.16	ENSMUST00000073924.10	3866	5	13205	84	13154	-84	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTGTGTTCCATATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	58771246	58774030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_58771200_58774000
ENSMUSG00000020492.12_0	chr11	+	3007	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	24	6	7	-5	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTATCTAGCCTCCATGT	NA	False	NA	7	True	AATAAA	-15	NA	87000083	87015455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
ENSMUSG00000020492.12_6	chr11	+	5983	3	FSM	ENSMUSG00000065589.3_ENSMUSG00000020492.12	ENSMUST00000131202.2	673	3	-2788	-2522	77	-5	multi-exon	FALSE	canonical	3	196	junction_2	4	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTATCTAGCCTCCATGT	NA	False	NA	7	True	AATAAA	-15	NA	87003906	87015455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87007017_87008493_87008671_87012759
ENSMUSG00000020492.12_8	chr11	+	2846	2	ISM	ENSMUSG00000020492.12	ENSMUST00000131202.2	673	3	1823	-2519	1823	-8	3prime_fragment	FALSE	canonical	3	196	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATAGTATCTAGCCTCCA	NA	False	NA	4	True	AATAAA	-12	NA	87008517	87015452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_87008671_87012759
ENSMUSG00000020492.12_9	chr11	+	2339	1	ISM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	13059	4	6424	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATCTAGCCTCCATGTTA	NA	False	NA	9	True	AATAAA	-17	NA	87013118	87015457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_87013100_87015500
ENSMUSG00000020493.9_0	chr11	-	3783	11	NNC	ENSMUSG00000020493.9	novel	3824	10	NA	NA	-69	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.3238075793812	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCTTCCAGAGTTCATG	NA	False	NA	-16	True	ATTAAA	-13	NA	86999603	86979981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_86980619_86980725_86982692_86987788_86987886_86987960_86988021_86989488_86989605_86990200_86990300_86992207_86992472_86994012_86994136_86994365_86994517_86996834_86996968_86999466
ENSMUSG00000020493.9_1	chr11	-	3604	10	FSM	ENSMUSG00000020493.9	ENSMUST00000051395.9	3824	10	-47	267	-47	-267	multi-exon	FALSE	canonical	3	68	junction_6	5.79484658240235	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGCTGCTATTGCTGT	NA	False	NA	NA	False	NA	NA	NA	86999581	86980245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86982692_86987788_86987886_86987960_86988021_86989488_86989605_86990200_86990300_86992207_86992472_86994012_86994136_86994365_86994517_86996834_86996968_86999466
ENSMUSG00000020493.9_4	chr11	-	1043	1	ISM	ENSMUSG00000020493.9	ENSMUST00000051395.9	3824	10	18507	6	18507	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATATGCTTCCAGAGTTC	NA	False	NA	-19	True	ATTAAA	-10	NA	86981027	86979984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_86980000_86981000
ENSMUSG00000020495.14_0	chr11	-	3187	4	FSM	ENSMUSG00000020495.14	ENSMUST00000020801.14	3218	4	7	24	7	-20	multi-exon	FALSE	canonical	3	76	junction_2	5.65685424949238	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAAAGGATACAAAA	NA	False	NA	-23	True	AATAAA	-11	NA	86977593	86968581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86968977_86970991_86971865_86974425_86974572_86975820
ENSMUSG00000020496.11_0	chr11	-	1925	4	FSM	ENSMUSG00000020496.11	ENSMUST00000094151.6	1949	4	20	4	20	-4	multi-exon	TRUE	canonical	3	1063	junction_2	80.5495016882303	1686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCTCTGTTTCCATACC	NA	False	NA	-20	True	AATAAA	-13	NA	58829722	58823117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_58824223_58824832_58825058_58827965_58828059_58829220
ENSMUSG00000020496.11_6	chr11	-	2536	3	NIC	ENSMUSG00000020496.11	novel	1949	4	NA	NA	20	-3	intron_retention	FALSE	canonical	3	1063	junction_1	6.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTCTGTTTCCATACCT	NA	False	NA	-19	True	AATAAA	-14	NA	58829722	58823116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_58825058_58827965_58828059_58829220
ENSMUSG00000020513.16_0	chr11	+	1870	9	FSM	ENSMUSG00000020513.16	ENSMUST00000069503.13	1871	9	0	1	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.83087623059003	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCAGTCTGTTAAGTAA	NA	False	NA	NA	False	AATAAA	-18	NA	86435816	86458185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_86436057_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
ENSMUSG00000020513.16_1	chr11	+	2043	9	FSM	ENSMUSG00000020513.16	ENSMUST00000167178.9	1976	9	-75	8	-75	-8	multi-exon	FALSE	canonical	1	1	junction_1	14.9702830634561	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTCAGGTTCAGTCTG	NA	False	NA	NA	False	AATAAA	-10	NA	86435741	86458177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_86436163_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
ENSMUSG00000020514.9_1	chr11	+	715	7	FSM	ENSMUSG00000020514.9	ENSMUST00000020820.2	722	7	7	0	7	0	multi-exon	TRUE	canonical	3	1080	junction_1	114.661821603066	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTTTCATTGAATTATT	1488	False	NA	12	True	AGTAAA	-15	NA	58062493	58070391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58062540_58062619_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
ENSMUSG00000020514.9_3	chr11	+	894	7	NIC	ENSMUSG00000020514.9	novel	722	7	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	483.207138698187	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTTTCATTGAATTATT	1488	False	NA	12	True	AGTAAA	-15	NA	58062493	58070391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_58062540_58062619_58062848_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
ENSMUSG00000020515.14_10	chr11	+	2090	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	-62	7	-62	-7	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATTGGCATGAAGTGTG	NA	False	NA	7	True	AATAAA	-12	NA	57994916	58009413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ENSMUSG00000020515.14_31	chr11	+	1974	6	ISM	ENSMUSG00000020515.14	ENSMUST00000108843.8	2099	7	5326	6	-4472	-6	3prime_fragment	FALSE	canonical	3	691	junction_2	54.4227893441709	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTGGCATGAAGTGTGG	NA	False	NA	8	True	AATAAA	-13	NA	58000380	58009414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ENSMUSG00000020516.16_3	chr11	-	2331	15	FSM	ENSMUSG00000020516.16	ENSMUST00000154617.8	5531	15	36	3164	-4	-2	multi-exon	FALSE	canonical	3	211	junction_9	22.8179351227342	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACAGCTGTGGCTTGTC	NA	False	NA	-6	True	AATAAA	-19	NA	86435595	86392860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
ENSMUSG00000020516.16_6	chr11	-	3079	16	NIC	ENSMUSG00000020516.16	novel	5531	15	NA	NA	-4	703	combination_of_known_splicesites	FALSE	canonical	3	28	junction_9	79.1358887540216	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTCCTGCCTTAAGGAGC	NA	False	NA	NA	False	AATAAA	-28	NA	86435595	86392155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408175_86408219_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
ENSMUSG00000020516.16_8	chr11	-	2537	1	ISM	ENSMUSG00000020516.16	ENSMUST00000154617.8	5531	15	43251	147	10091	-147	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATAAAATAGAAGTGATT	NA	False	NA	NA	False	NA	NA	NA	86392380	86389843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_86389800_86392400
ENSMUSG00000020519.6_0	chr11	+	1165	4	FSM	ENSMUSG00000020519.6	ENSMUST00000020826.6	1151	4	-18	4	-18	-4	multi-exon	FALSE	canonical	3	543	junction_2	12.1197726417986	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTCTCGGTCAGGAGG	NA	False	NA	20	True	AATAAA	-20	NA	57692444	57701039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_57693116_57696869_57696993_57698849_57698949_57700767
ENSMUSG00000020519.6_1	chr11	+	3026	3	NIC	ENSMUSG00000020519.6	novel	1151	4	NA	NA	-21	-3	intron_retention	FALSE	canonical	3	563	junction_1	4.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTCTCGGTCAGGAGGA	NA	False	NA	21	True	AATAAA	-21	NA	57692441	57701040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_57693116_57696869_57698949_57700767
ENSMUSG00000020520.15_0	chr11	+	3248	12	FSM	ENSMUSG00000020520.15	ENSMUST00000066987.14	4715	12	7	1460	7	-1460	multi-exon	TRUE	canonical	3	24	junction_9	7.98034776267445	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAGAAAATGCAGCCGAG	NA	False	NA	25	True	AATAAA	-16	NA	57536274	57676880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_57536544_57612120_57612224_57616348_57616488_57627803_57627971_57656385_57656572_57660317_57660502_57662293_57662412_57668456_57668565_57671875_57672098_57673031_57673149_57674515_57674666_57675395
ENSMUSG00000020520.15_2	chr11	+	1756	3	FSM	ENSMUSG00000020520.15	ENSMUST00000108846.2	1745	3	-16	5	7	-5	multi-exon	FALSE	canonical	3	46	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTAGAAACGGTGTCTG	NA	False	NA	NA	False	AGTAAA	-19	NA	57536274	57617732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_57536544_57612120_57612224_57616348
ENSMUSG00000020520.15_4	chr11	+	3145	11	NIC	ENSMUSG00000020520.15	novel	4715	12	NA	NA	7	-1460	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	12.9676520619579	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAGAAAATGCAGCCGAG	NA	False	NA	25	True	AATAAA	-16	NA	57536274	57676880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_57536544_57616348_57616488_57627803_57627971_57656385_57656572_57660317_57660502_57662293_57662412_57668456_57668565_57671875_57672098_57673031_57673149_57674515_57674666_57675395
ENSMUSG00000020520.15_8	chr11	+	1483	1	ISM	ENSMUSG00000020520.15	ENSMUST00000066987.14	4715	12	139128	1462	139105	-1462	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAGAGAAAATGCAGCCG	NA	False	NA	23	True	AATAAA	-14	NA	57675395	57676878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_57675400_57676900
ENSMUSG00000020521.8_0	chr11	+	1948	9	FSM	ENSMUSG00000020521.8	ENSMUST00000020827.7	4452	9	22	2482	-6	-2482	multi-exon	TRUE	canonical	3	265	junction_2	21.9146070008111	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACCTGGTGGACCTGTT	NA	False	NA	2	True	AATAAA	-13	NA	86375504	86387369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_86375626_86376886_86377332_86377481_86377559_86379892_86379994_86381183_86381338_86382504_86382664_86383986_86384053_86386053_86386156_86386646
ENSMUSG00000020522.14_0	chr11	+	4794	3	FSM	ENSMUSG00000020522.14	ENSMUST00000108849.8	4827	3	24	9	1	-8	multi-exon	FALSE	canonical	3	17	junction_1	35	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTCAGAGTTGAATGA	NA	False	NA	10	True	AATAAA	-11	NA	57409513	57424632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_57409539_57418684_57419116_57420294
ENSMUSG00000020522.14_2	chr11	+	4829	3	FSM	ENSMUSG00000020522.14	ENSMUST00000020830.14	4839	3	2	8	2	-8	multi-exon	FALSE	canonical	3	62	junction_1	12.5	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTCAGAGTTGAATGA	NA	False	NA	10	True	AATAAA	-11	NA	57409514	57424632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_57409575_57418684_57419116_57420294
ENSMUSG00000020522.14_5	chr11	+	4769	2	ISM	ENSMUSG00000020522.14	ENSMUST00000108848.2	627	3	4895	-4280	4895	-8	3prime_fragment	FALSE	canonical	3	87	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTCAGAGTTGAATGA	NA	False	NA	10	True	AATAAA	-11	NA	57418684	57424632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_57419116_57420294
ENSMUSG00000020522.14_6	chr11	+	2960	1	ISM	ENSMUSG00000020522.14	ENSMUST00000108849.8	4827	3	12183	9	7883	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTCAGAGTTGAATGA	NA	False	NA	10	True	AATAAA	-11	NA	57421672	57424632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_57421700_57424600
ENSMUSG00000020523.15_1	chr11	-	2551	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	3	-6	at_least_one_novel_splicesite	TRUE	canonical	3	272	junction_13	66.0623696698092	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATAAGCGTGGTATTT	NA	False	NA	NA	False	AATAAA	-15	NA	57409440	57373824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405118_57409398
ENSMUSG00000020523.15_3	chr11	-	2548	14	FSM	ENSMUSG00000020523.15	ENSMUST00000020831.13	2557	14	3	6	3	-6	multi-exon	FALSE	canonical	3	63	junction_13	118.75144346678	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATAAGCGTGGTATTT	NA	False	NA	NA	False	AATAAA	-15	NA	57409440	57373824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
ENSMUSG00000020525.18_0	chr11	+	2867	6	FSM	ENSMUSG00000020525.18	ENSMUST00000020835.16	2899	6	22	10	22	-10	multi-exon	FALSE	canonical	3	65	junction_1	8.90842298052804	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAATTTATGTTGCTGGC	7728	False	NA	-7	True	AATAAA	-3	NA	85202091	85237882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_85202750_85217689_85217919_85223076_85223202_85227890_85228082_85230379_85230623_85236461
ENSMUSG00000020525.18_1	chr11	+	1334	1	NIC	ENSMUSG00000020525.18	novel	2899	6	NA	NA	2	-24624	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTCTTGGTGTGTGTGTG	7708	False	NA	NA	False	ATTAAA	-27	NA	85202071	85203405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_85202100_85203400
ENSMUSG00000020526.13_0	chr11	-	907	5	FSM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	19	72	2	-72	multi-exon	FALSE	canonical	3	360	junction_2	22.0609949911603	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGTGTGGTTCTCTTGAT	NA	False	NA	-3	True	ATTAAA	-18	NA	84807173	84801847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_84802475_84804047_84804129_84805036_84805112_84806924_84806957_84807081
ENSMUSG00000020526.13_1	chr11	-	487	1	ISM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	4854	76	4793	-76	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTAAGGTGTGGTTCTCT	NA	False	NA	-7	True	ATTAAA	-14	NA	84802338	84801851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_84801900_84802300
ENSMUSG00000020527.15_1	chr11	+	3790	25	FSM	ENSMUSG00000020527.15	ENSMUST00000093969.11	4091	25	188	113	-17	-9	multi-exon	FALSE	canonical	3	91	junction_6	19.4264996561112	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAATAGCCAACCTT	NA	False	NA	7	True	AATAAA	-15	NA	84771161	84801939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
ENSMUSG00000020527.15_16	chr11	+	3713	24	NIC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-17	-9	combination_of_known_junctions	FALSE	canonical	3	18	junction_9	31.3266828534579	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAATAGCCAACCTT	NA	False	NA	7	True	AATAAA	-15	NA	84771161	84801939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
ENSMUSG00000020527.15_2	chr11	+	4257	26	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-20	-9	at_least_one_novel_splicesite	TRUE	canonical	3	29	junction_2	32.2787856029312	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAATAGCCAACCTT	NA	False	NA	7	True	AATAAA	-15	NA	84771158	84801939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_84771338_84771615_84772080_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
ENSMUSG00000020528.15_1	chr11	-	1819	12	FSM	ENSMUSG00000020528.15	ENSMUST00000004955.14	1837	12	15	3	-7	-3	multi-exon	FALSE	canonical	3	105	junction_11	44.7137821487915	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTCTGTATGTGGATAG	257	False	NA	-10	True	AATAAA	-19	NA	61652873	61620482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
ENSMUSG00000020528.15_2	chr11	-	1747	11	FSM	ENSMUSG00000020528.15	ENSMUST00000168115.8	1771	11	17	7	-9	-3	multi-exon	FALSE	canonical	3	49	junction_10	57.9565354382058	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTCTGTATGTGGATAG	233	False	NA	-10	True	AATAAA	-19	NA	61652897	61620482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61652779
ENSMUSG00000020528.15_4	chr11	-	1939	13	NIC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	-10	-3	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	72.6714447970376	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTCTGTATGTGGATAG	232	False	NA	-10	True	AATAAA	-19	NA	61652898	61620482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652305_61652401_61652779
ENSMUSG00000020528.15_6	chr11	-	1668	10	NIC	ENSMUSG00000020528.15	novel	1771	11	NA	NA	-5	-3	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	77.5972508104078	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTCTGTATGTGGATAG	259	False	NA	-10	True	AATAAA	-19	NA	61652871	61620482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61652779
ENSMUSG00000020528.15_8	chr11	-	1764	11	FSM	ENSMUSG00000020528.15	ENSMUST00000151966.8	1734	11	-33	3	-5	-3	multi-exon	FALSE	canonical	3	27	junction_8	65.5872701063248	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTCTGTATGTGGATAG	259	False	NA	-10	True	AATAAA	-19	NA	61652871	61620482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61647407_61647504_61652779
ENSMUSG00000020530.15_0	chr11	-	2683	13	FSM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	61	-216	61	216	multi-exon	FALSE	canonical	3	231	junction_7	87.5523256242929	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACGCATAGTAGAATGTG	NA	False	NA	-14	True	AATAAA	-12	NA	84760967	84723415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_1	chr11	-	2689	13	ISM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	597	229	61	216	3prime_fragment	FALSE	canonical	3	268	junction_7	78.9034219790245	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACGCATAGTAGAATGTG	NA	False	NA	-14	True	AATAAA	-12	NA	84760967	84723415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_10	chr11	-	3846	12	NIC	ENSMUSG00000020530.15	novel	2528	13	NA	NA	26	-222	intron_retention	FALSE	canonical	3	231	junction_6	91.1215698716158	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTAGAATGTGGTGTACA	NA	False	NA	-7	True	AATAAA	-19	NA	84761002	84723408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_15	chr11	-	3865	12	NIC	ENSMUSG00000020530.15	novel	2950	14	NA	NA	9	219	intron_retention	FALSE	canonical	3	268	junction_6	81.9556421042949	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCATAGTAGAATGTGGTG	NA	False	NA	-11	True	AATAAA	-15	NA	84761019	84723412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_2	chr11	-	2796	14	FSM	ENSMUSG00000020530.15	ENSMUST00000108081.9	3034	14	12	226	2	219	multi-exon	FALSE	canonical	3	67	junction_13	134.623999724325	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCATAGTAGAATGTGGTG	NA	False	NA	-11	True	AATAAA	-15	NA	84761603	84723412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
ENSMUSG00000020530.15_22	chr11	-	2787	14	FSM	ENSMUSG00000020530.15	ENSMUST00000168434.8	3056	14	40	229	2	216	multi-exon	FALSE	canonical	3	67	junction_13	138.817874810357	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACGCATAGTAGAATGTG	NA	False	NA	-14	True	AATAAA	-12	NA	84761603	84723415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
ENSMUSG00000020530.15_76	chr11	-	1478	6	NIC	ENSMUSG00000020530.15	novel	386	4	NA	NA	95	544	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	192.335748107314	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTTCTTTTTCTGTTTTG	NA	False	NA	-7	True	ATTAAA	-9	NA	84760933	84742663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_84743363_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020532.19_0	chr11	+	9149	55	NIC	ENSMUSG00000020532.19	novel	9026	54	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_50	41.0147853831693	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCCACCGTTTGTCA	NA	False	NA	6	True	AATAAA	-14	NA	84070629	84292471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_84070753_84086263_84086514_84104983_84105117_84106659_84106799_84113967_84114078_84115269_84115352_84116959_84117059_84119745_84119853_84122476_84122588_84129651_84129862_84134103_84134275_84136032_84136195_84136519_84136684_84140239_84140391_84142057_84142162_84147509_84147592_84148001_84148148_84150148_84150300_84151449_84151585_84152335_84152483_84153221_84153411_84154097_84154199_84154864_84154954_84161142_84161268_84167359_84167474_84168621_84168736_84169691_84169782_84171217_84171337_84181113_84181138_84183716_84183861_84184722_84184820_84185763_84185872_84190893_84190951_84191246_84191292_84197942_84197985_84202092_84202309_84203552_84203709_84206599_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
ENSMUSG00000020532.19_1	chr11	+	9176	55	NIC	ENSMUSG00000020532.19	novel	9026	54	NA	NA	-31	0	combination_of_known_junctions	TRUE	canonical	1	3	junction_50	39.807290417339	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCCACCGTTTGTCA	NA	False	NA	6	True	AATAAA	-14	NA	84070625	84292471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_84070753_84083904_84083952_84086263_84086514_84104983_84105117_84106659_84106799_84113967_84114078_84115269_84115352_84116959_84117059_84119745_84119853_84122476_84122588_84129651_84129862_84134103_84134275_84136032_84136195_84136519_84136684_84140239_84140391_84142057_84142162_84147509_84147592_84148001_84148148_84150148_84150300_84151449_84151585_84152335_84152483_84153221_84153411_84154097_84154199_84154864_84154954_84161142_84161268_84167359_84167474_84168621_84168736_84169691_84169782_84171217_84171337_84183716_84183861_84184722_84184820_84185763_84185872_84190893_84190951_84191246_84191292_84197942_84197985_84202092_84202309_84203552_84203709_84206599_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
ENSMUSG00000020532.19_2	chr11	+	9117	54	NIC	ENSMUSG00000020532.19	novel	9026	54	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_49	39.579158530227	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCCACCGTTTGTCA	NA	False	NA	6	True	AATAAA	-14	NA	84070637	84292471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_84070753_84086263_84086514_84104983_84105117_84106659_84106799_84113967_84114078_84115269_84115352_84116959_84117059_84119745_84119853_84122476_84122588_84129651_84129862_84134103_84134275_84136032_84136195_84136519_84136684_84140239_84140391_84142057_84142162_84147509_84147592_84148001_84148148_84150148_84150300_84151449_84151585_84152335_84152483_84153221_84153411_84154097_84154199_84154864_84154954_84161142_84161268_84167359_84167474_84168621_84168736_84169691_84169782_84171217_84171337_84183716_84183861_84184722_84184820_84185763_84185872_84190893_84190951_84191246_84191292_84197942_84197985_84202092_84202309_84203552_84203709_84206599_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
ENSMUSG00000020532.19_3	chr11	+	9183	56	NIC	ENSMUSG00000020532.19	novel	9026	54	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_51	41.1637969800914	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCCACCGTTTGTCA	NA	False	NA	6	True	AATAAA	-14	NA	84070642	84292471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_84070753_84083904_84083952_84086263_84086514_84104983_84105117_84106659_84106799_84113967_84114078_84115269_84115352_84116959_84117059_84119745_84119853_84122476_84122588_84129651_84129862_84134103_84134275_84136032_84136195_84136519_84136684_84140239_84140391_84142057_84142162_84147509_84147592_84148001_84148148_84150148_84150300_84151449_84151585_84152335_84152483_84153221_84153411_84154097_84154199_84154864_84154954_84161142_84161268_84167359_84167474_84168621_84168736_84169691_84169782_84171217_84171337_84181113_84181138_84183716_84183861_84184722_84184820_84185763_84185872_84190893_84190951_84191246_84191292_84197942_84197985_84202092_84202309_84203552_84203709_84206599_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
ENSMUSG00000020532.19_44	chr11	+	5110	22	NNC	ENSMUSG00000020532.19	novel	9513	56	NA	NA	26304	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_17	56.7144656348352	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCCACCGTTTGTCA	1981	False	NA	6	True	AATAAA	-14	NA	84197584	84292471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_84197739_84197942_84197985_84202092_84202309_84203552_84203709_84206599_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
ENSMUSG00000020532.19_50	chr11	+	4500	18	ISM	ENSMUSG00000020532.19	ENSMUST00000020843.13	9026	54	120378	0	35361	0	3prime_fragment	FALSE	canonical	1	3	junction_13	52.1691420014038	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCCACCGTTTGTCA	NA	False	NA	6	True	AATAAA	-14	NA	84206641	84292471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
ENSMUSG00000020532.19_52	chr11	+	3928	15	ISM	ENSMUSG00000020532.19	ENSMUST00000020843.13	9026	54	142983	0	57966	0	3prime_fragment	FALSE	canonical	1	3	junction_10	56.4300632714188	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCCACCGTTTGTCA	NA	False	NA	6	True	AATAAA	-14	NA	84229246	84292471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
ENSMUSG00000020532.19_67	chr11	+	2342	3	ISM	ENSMUSG00000020532.19	ENSMUST00000020843.13	9026	54	196830	0	111813	0	3prime_fragment	FALSE	canonical	3	180	junction_2	7	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCCACCGTTTGTCA	NA	False	NA	6	True	AATAAA	-14	NA	84283093	84292471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_84283213_84288884_84289022_84290385
ENSMUSG00000020532.19_68	chr11	+	1076	1	ISM	ENSMUSG00000020532.19	ENSMUST00000103201.8	9513	56	227448	6	120115	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCCACCGTTTGTCA	NA	False	NA	6	True	AATAAA	-14	NA	84291395	84292471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_84291400_84292500
ENSMUSG00000020534.15_4	chr11	-	1990	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	85	783	85	14	multi-exon	TRUE	canonical	3	983	junction_2	78.1211180853749	1720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGGTGGGTCCTGTAGCA	NA	False	NA	-2	True	ATTAAA	-26	NA	60702006	60679712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
ENSMUSG00000020536.13_0	chr11	+	4315	21	FSM	ENSMUSG00000020536.13	ENSMUST00000108719.4	4268	21	-55	8	-55	-8	multi-exon	FALSE	canonical	3	223	junction_6	33.7192452465947	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAACTACATCTGCACACA	NA	False	NA	31	True	AATAAA	-16	NA	60590615	60605004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746
ENSMUSG00000020536.13_4	chr11	+	4212	22	FSM	ENSMUSG00000020536.13	ENSMUST00000052346.10	4303	22	75	16	-47	-16	multi-exon	FALSE	canonical	3	67	junction_21	57.9955428735457	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATCTTTTAAACTACATC	NA	False	NA	23	True	AATAAA	-8	NA	60590623	60604996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746_60603868_60603954
ENSMUSG00000020537.10_0	chr11	+	1704	13	FSM	ENSMUSG00000020537.10	ENSMUST00000018568.4	1788	13	25	59	-8	-59	multi-exon	FALSE	canonical	3	378	junction_10	43.4117879536576	481	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAATTAAAAAAAAAA	NA	False	NA	-19	True	NA	NA	NA	60345441	60359521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
ENSMUSG00000020538.16_0	chr11	-	3470	18	ISM	ENSMUSG00000020538.16	ENSMUST00000020846.8	4299	19	13512	512	96	-512	3prime_fragment	FALSE	canonical	3	300	junction_15	52.3111531836648	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTTCAGTTTTGTTTAT	8616	False	NA	-8	True	ATTAAA	-15	NA	60097918	60090426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663
ENSMUSG00000020538.16_1	chr11	-	3719	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	-27	-512	combination_of_known_junctions	FALSE	canonical	3	238	junction_18	63.0911793643156	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTTCAGTTTTGTTTAT	5289	False	NA	-8	True	ATTAAA	-15	NA	60101245	60090426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60101161
ENSMUSG00000020538.16_2	chr11	-	3780	19	FSM	ENSMUSG00000020538.16	ENSMUST00000020846.8	4299	19	7	512	7	-512	multi-exon	FALSE	canonical	3	238	junction_18	63.0911793643156	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTTCAGTTTTGTTTAT	3808	False	NA	-8	True	ATTAAA	-15	NA	60111423	60090426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60111278
ENSMUSG00000020538.16_21	chr11	-	3882	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	-186	-510	combination_of_known_junctions	FALSE	canonical	3	37	junction_18	97.6774106086452	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGTTTTGTTTATCT	1638	False	NA	-6	True	ATTAAA	-17	NA	60113593	60090424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60113348
ENSMUSG00000020538.16_5	chr11	-	3701	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	-24	-512	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	108.49533471224	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTTCAGTTTTGTTTAT	5292	False	NA	-8	True	ATTAAA	-15	NA	60101242	60090426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60097013_60097137_60097220_60097400_60097663_60098084_60101161
ENSMUSG00000020538.16_6	chr11	-	3765	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	8	-511	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	108.49533471224	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTCAGTTTTGTTTATC	3809	False	NA	-7	True	ATTAAA	-16	NA	60111422	60090425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60097013_60097137_60097220_60097400_60097663_60098084_60111278
ENSMUSG00000020541.13_0	chr11	-	2052	16	FSM	ENSMUSG00000020541.13	ENSMUST00000020849.9	4308	16	28	2228	0	-2	multi-exon	FALSE	canonical	3	215	junction_9	19.1849478034792	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTTGTGTTGTTGTTTTG	NA	False	NA	-4	True	ATTAAA	-15	NA	90578405	90536518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574140_90575887_90575973_90578338
ENSMUSG00000020544.15_0	chr11	+	1216	4	FSM	ENSMUSG00000020544.15	ENSMUST00000020851.15	1224	4	12	-4	12	4	multi-exon	FALSE	canonical	3	285	junction_3	41.2876091178294	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCTGACAACTTGATTTC	NA	False	NA	14	True	NA	NA	NA	90529010	90535761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_90529379_90531202_90531359_90534478_90534605_90535195
ENSMUSG00000020544.15_1	chr11	+	1965	4	NNC	ENSMUSG00000020544.15	novel	1224	4	NA	NA	13	742	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	152.067967260257	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAACAACACAACTGAC	NA	False	NA	NA	False	ATTAAA	-10	NA	90529011	90536499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_90529379_90531190_90531359_90534478_90534605_90535195
ENSMUSG00000020546.15_1	chr11	-	5960	18	FSM	ENSMUSG00000020546.15	ENSMUST00000143203.8	5985	18	13	12	2	-12	multi-exon	FALSE	canonical	2	8	junction_15	2.25532817796245	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATACTAAACAGTGTGC	NA	False	NA	NA	False	AGTAAA	-20	NA	90528897	90367329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_90371541_90385427_90385486_90426305_90426440_90428736_90428787_90430991_90431109_90439636_90439814_90462547_90462614_90466075_90466166_90483157_90483250_90485570_90485668_90491011_90491107_90496778_90496858_90497793_90498011_90498170_90498278_90510008_90510142_90512480_90512609_90513017_90513088_90528858
ENSMUSG00000020546.15_2	chr11	-	2138	1	ISM	ENSMUSG00000020546.15	ENSMUST00000143203.8	5985	18	159449	6	70275	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAACAGTGTGCTAGATT	NA	False	NA	NA	False	AGTAAA	-26	NA	90369461	90367323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_90367300_90369500
ENSMUSG00000020546.15_6	chr11	-	3816	13	ISM	ENSMUSG00000020546.15	ENSMUST00000143203.8	5985	18	30687	15619	23520	-2	internal_fragment	FALSE	canonical	2	9	junction_3	2.17785572422866	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GCAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	90498223	90382936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_90385486_90426305_90426440_90428736_90428787_90430991_90431109_90439636_90439814_90462547_90462614_90466075_90466166_90483157_90483250_90485570_90485668_90491011_90491107_90496778_90496858_90497793_90498011_90498170
ENSMUSG00000020546.15_8	chr11	-	1795	16	FSM	ENSMUSG00000020546.15	ENSMUST00000020858.14	1782	16	-20	7	2	-7	multi-exon	FALSE	canonical	2	8	junction_13	1.92527054375915	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTTAGTTCTGGTAGTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	90528908	90426212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_90426440_90428736_90428787_90430991_90431109_90439636_90439814_90462547_90462614_90466075_90466166_90483157_90483250_90485570_90485668_90491011_90491107_90496778_90496858_90497793_90498011_90498170_90498278_90510008_90510142_90512480_90512609_90513017_90513088_90528858
ENSMUSG00000020547.6_1	chr12	-	1832	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	28	11	-11	-11	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	1159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCCTTGTGTATATGG	NA	False	NA	-22	True	AATAAA	-10	NA	36206796	36141844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
ENSMUSG00000020549.15_0	chr11	+	2893	24	FSM	ENSMUSG00000020549.15	ENSMUST00000101049.9	2884	24	-11	2	-8	-2	multi-exon	FALSE	canonical	3	305	junction_18	22.4427858997362	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGCTTCAGTGTGGGG	NA	False	NA	13	True	AATAAA	-13	NA	64869888	64892424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
ENSMUSG00000020549.15_1	chr11	+	2735	25	FSM	ENSMUSG00000020549.15	ENSMUST00000071891.12	2771	25	27	9	-6	-7	multi-exon	FALSE	canonical	3	56	junction_24	61.5767221304718	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACATTACTCTTGACAA	NA	False	NA	1	True	AATAAA	-9	NA	64869890	64892886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820_64892040_64892657
ENSMUSG00000020553.9_0	chr11	-	1931	6	FSM	ENSMUSG00000020553.9	ENSMUST00000020864.9	2723	6	29	763	29	-763	multi-exon	FALSE	canonical	3	31	junction_1	5.78273291792038	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCTCTGTGTGCTGTCTC	NA	False	NA	-12	True	AATAAA	-14	NA	89893691	89874253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_89875583_89876918_89876987_89878021_89878194_89879520_89879601_89881896_89882015_89893527
ENSMUSG00000020553.9_1	chr11	-	1863	5	NIC	ENSMUSG00000020553.9	novel	2723	6	NA	NA	34	-758	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	18.1435250158287	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGCTGTCTCCCTCT	NA	False	NA	-7	True	AATAAA	-19	NA	89893686	89874248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_89875583_89878021_89878194_89879520_89879601_89881896_89882015_89893527
ENSMUSG00000020553.9_2	chr11	-	738	1	ISM	ENSMUSG00000020553.9	ENSMUST00000020864.9	2723	6	18730	762	18730	-762	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTGTGTGCTGTCTCC	NA	False	NA	-11	True	AATAAA	-15	NA	89874990	89874252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_89874300_89875000
ENSMUSG00000020561.9_0	chr12	+	2334	4	FSM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	0	1991	0	1686	multi-exon	FALSE	canonical	3	454	junction_3	49.8687165354081	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCAATACAGTTGTCTTT	NA	False	NA	NA	False	AATAAA	-7	NA	33479633	33489400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691
ENSMUSG00000020561.9_13	chr12	+	1939	1	ISM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	8691	1128	1545	-1128	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTAGCCTGTTTCCAAT	NA	False	NA	-4	True	AGTAAA	-6	NA	33488324	33490263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_33488300_33490300
ENSMUSG00000020562.8_0	chr12	+	454	4	FSM	ENSMUSG00000020562.8	ENSMUST00000020878.8	673	4	221	-2	221	2	multi-exon	FALSE	canonical	3	39	junction_3	13.0213499897497	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGTGTCTGGTTTCATT	NA	False	NA	6	True	AATAAA	-16	NA	33445073	33451268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_33445198_33448277_33448443_33448546_33448635_33451191
ENSMUSG00000020564.18_0	chr12	+	1668	4	FSM	ENSMUSG00000020564.18	ENSMUST00000110824.9	1675	4	8	-1	8	1	multi-exon	FALSE	canonical	2	8	junction_2	2.35702260395516	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCTGTACATTGAGTC	NA	False	NA	NA	False	NA	NA	NA	33197717	33301146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_33197915_33198431_33198501_33267710_33267816_33299849
ENSMUSG00000020564.18_1	chr12	+	2803	12	NIC	ENSMUSG00000020564.18	novel	2973	13	NA	NA	3	4	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	3.84836554336668	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACAGTGTTTTCTCTGTT	NA	False	NA	NA	False	AAAAAG	-30	NA	33197775	33423188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_33197915_33198431_33198501_33267710_33267816_33375909_33376133_33391919_33392195_33394888_33394972_33395836_33396088_33408654_33408848_33412971_33413094_33416970_33417914_33420981_33421057_33422863
ENSMUSG00000020566.20_0	chr12	-	1427	13	FSM	ENSMUSG00000020566.20	ENSMUST00000221129.2	1425	13	0	-2	0	0	multi-exon	FALSE	canonical	3	13	junction_8	6.04841577054135	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTTTCTTGTGTTCTAA	NA	False	NA	0	True	AATAAA	-14	NA	17374731	17334723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_17334950_17335113_17335247_17338083_17338182_17341429_17341524_17341628_17341722_17344145_17344215_17344676_17344776_17347729_17347822_17351121_17351217_17358272_17358359_17371598_17371667_17373338_17373512_17374630
ENSMUSG00000020570.16_1	chr12	+	1990	5	FSM	ENSMUSG00000020570.16	ENSMUST00000020885.13	2019	5	29	0	29	0	multi-exon	FALSE	canonical	3	256	junction_3	20.9806458432528	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGAATGCCCCGTT	8454	False	NA	NA	False	AATAAA	-7	NA	33004211	33026903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
ENSMUSG00000020570.16_10	chr12	+	4869	2	ISM	ENSMUSG00000020570.16	ENSMUST00000218816.2	529	4	5369	-1190	5360	0	3prime_fragment	FALSE	canonical	3	285	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGAATGCCCCGTT	NA	False	NA	NA	False	AATAAA	-7	NA	33020764	33026903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_33024319_33025588
ENSMUSG00000020570.16_11	chr12	+	762	1	ISM	ENSMUSG00000020570.16	ENSMUST00000076698.13	4999	6	22252	2956	10737	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGAATGCCCCGTT	NA	False	NA	NA	False	AATAAA	-7	NA	33026141	33026903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_33026100_33026900
ENSMUSG00000020571.14_1	chr12	+	1726	13	FSM	ENSMUSG00000020571.14	ENSMUST00000239402.2	2125	13	-4	403	-4	-403	multi-exon	FALSE	canonical	3	2590	junction_6	180.731134715509	3039	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATGCTGATAAATGTATG	NA	False	NA	11	True	AATAAA	-13	NA	17316591	17334368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ENSMUSG00000020572.9_0	chr12	+	2761	11	FSM	ENSMUSG00000020572.9	ENSMUST00000020886.9	4527	11	17	1749	17	-1749	multi-exon	FALSE	canonical	3	823	junction_5	70.9532240282286	1434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGTATGGACATCATTT	NA	False	NA	6	True	ATTAAA	-10	NA	32870350	32901599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_32870626_32880165_32880323_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
ENSMUSG00000020572.9_1	chr12	+	2702	11	NIC	ENSMUSG00000020572.9	novel	4527	11	NA	NA	13	-1742	combination_of_known_junctions	FALSE	canonical	3	92	junction_2	260.465371978695	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGACATCATTTATTAATT	NA	False	NA	13	True	ATTAAA	-17	NA	32870346	32901606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_32870626_32880165_32880253_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
ENSMUSG00000020576.11_0	chr12	+	7238	52	NNC	ENSMUSG00000020576.11	novel	7234	52	NA	NA	-9	0	at_least_one_novel_splicesite	TRUE	canonical	3	26	junction_19	10.6193442780164	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCGGATGCCCTTTGAGT	NA	False	NA	NA	False	AATAAA	-20	NA	13319124	13633804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_13319266_13321164_13321220_13322657_13322695_13323788_13323867_13324175_13324224_13329388_13329433_13335183_13335318_13338671_13338806_13339882_13339982_13350093_13350233_13356904_13356974_13360176_13360306_13367698_13367763_13371645_13371840_13372856_13373115_13374269_13374396_13378336_13378489_13380617_13380759_13381024_13381104_13385831_13385937_13386274_13386412_13402783_13402868_13406824_13406979_13410931_13411118_13412442_13412617_13424696_13424831_13427434_13427498_13429647_13429771_13440925_13441029_13443303_13443534_13455374_13455488_13458194_13458309_13463528_13463643_13464784_13464943_13465645_13465733_13482897_13483063_13491467_13491582_13491859_13491948_13503053_13503131_13503485_13503624_13519841_13520072_13524127_13524239_13532386_13532638_13533710_13534046_13563370_13563590_13568945_13569149_13570695_13570786_13584380_13584577_13608612_13608753_13610837_13610977_13616129_13616259_13633391
ENSMUSG00000020576.11_1	chr12	+	7220	52	FSM	ENSMUSG00000020576.11	ENSMUST00000042953.10	7234	52	6	8	6	0	multi-exon	FALSE	canonical	3	21	junction_37	10.8075685101282	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCGGATGCCCTTTGAGT	NA	False	NA	NA	False	AATAAA	-20	NA	13319139	13633804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_13319266_13321164_13321220_13322657_13322695_13323788_13323867_13324175_13324224_13329388_13329433_13335183_13335318_13338671_13338806_13339882_13339982_13350093_13350233_13356904_13356974_13360176_13360306_13367698_13367763_13371645_13371840_13372856_13373115_13374269_13374396_13378336_13378489_13380617_13380759_13381024_13381104_13385831_13385937_13386274_13386412_13402783_13402868_13406824_13406979_13410931_13411118_13412442_13412617_13424696_13424831_13427434_13427498_13429647_13429771_13440925_13441029_13443303_13443534_13455374_13455488_13458194_13458309_13463528_13463643_13464784_13464943_13465645_13465733_13482897_13483063_13491467_13491582_13491862_13491948_13503053_13503131_13503485_13503624_13519841_13520072_13524127_13524239_13532386_13532638_13533710_13534046_13563370_13563590_13568945_13569149_13570695_13570786_13584380_13584577_13608612_13608753_13610837_13610977_13616129_13616259_13633391
ENSMUSG00000020576.11_33	chr12	+	595	3	ISM	ENSMUSG00000020576.11	ENSMUST00000221714.2	1768	9	73795	6	56039	-6	3prime_fragment	FALSE	canonical	3	63	junction_1	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCAACCGGATGCCCT	NA	False	NA	NA	False	AATAAA	-14	NA	13610917	13633798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_13610977_13616129_13616259_13633391
ENSMUSG00000020576.11_9	chr12	+	1468	14	ISM	ENSMUSG00000020576.11	ENSMUST00000042953.10	7234	52	-5	261866	-5	-7719	5prime_fragment	FALSE	canonical	3	29	junction_4	5.96339921332748	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTATAACATGAAAATCCC	NA	False	NA	NA	False	AATAAA	-6	NA	13319128	13371946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_13319266_13321164_13321220_13322657_13322695_13323788_13323867_13324175_13324224_13329388_13329433_13335183_13335318_13338671_13338806_13339882_13339982_13350093_13350233_13356904_13356974_13360176_13360306_13367698_13367763_13371645
ENSMUSG00000020577.18_0	chr12	-	1945	6	FSM	ENSMUSG00000020577.18	ENSMUST00000020896.17	1932	6	-20	7	-9	-7	multi-exon	FALSE	canonical	3	804	junction_3	64.3913037606787	690	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGTATATGGGTGTTT	NA	False	NA	-11	True	AATAAA	-13	NA	36092508	36064562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_36065772_36070488_36070603_36071799_36071914_36072751_36072833_36073903_36074072_36092249
ENSMUSG00000020580.11_1	chr12	+	6428	33	FSM	ENSMUSG00000020580.11	ENSMUST00000020904.8	7644	33	-43	1259	-43	-1259	multi-exon	FALSE	canonical	1	36	junction_11	41.2749805988749	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTAAAAAAGGAAAAAGTTT	1992	False	NA	NA	False	NA	NA	NA	16944852	17036565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_16945332_16976939_16977022_16978934_16979036_16990403_16990542_16992694_16992956_16998458_16998604_17000572_17000712_17002496_17002589_17003261_17003422_17004907_17004969_17005670_17005683_17007226_17007307_17007461_17007511_17008119_17008256_17008340_17008433_17008628_17008876_17009402_17009510_17011616_17011777_17015011_17015173_17015468_17015654_17016624_17016695_17018211_17018316_17018580_17018768_17021049_17021144_17021225_17021321_17022661_17022842_17022981_17023151_17024842_17024914_17025470_17025560_17026034_17026114_17027542_17027805_17027889_17028104_17034638
ENSMUSG00000020580.11_10	chr12	+	6383	32	NIC	ENSMUSG00000020580.11	novel	7644	33	NA	NA	-51	-1300	combination_of_known_splicesites	FALSE	canonical	2	2	junction_10	39.1709877986204	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAATGTCAAGTTTACA	1984	False	NA	NA	False	NA	NA	NA	16944844	17036524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_16945332_16976939_16977022_16978934_16979036_16990403_16990542_16992694_16992956_16998458_16998604_17000572_17000712_17002496_17002589_17003261_17003422_17004907_17004969_17007226_17007307_17007461_17007511_17008119_17008256_17008340_17008433_17008628_17008876_17009402_17009510_17011616_17011777_17015011_17015173_17015468_17015654_17016624_17016695_17018211_17018316_17018580_17018768_17021049_17021144_17021225_17021321_17022661_17022842_17022981_17023151_17024842_17024914_17025470_17025560_17026034_17026114_17027542_17027805_17027889_17028104_17034638
ENSMUSG00000020580.11_57	chr12	+	2537	1	ISM	ENSMUSG00000020580.11	ENSMUST00000020904.8	7644	33	90378	14	12192	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGTAAGCATCTTTTCC	1562	False	NA	5	True	AATAAA	-12	NA	17035273	17037810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_17035300_17037800
ENSMUSG00000020580.11_6	chr12	+	2169	9	ISM	ENSMUSG00000020580.11	ENSMUST00000220688.2	4357	33	-324	24119	-52	7165	5prime_fragment	FALSE	canonical	3	133	junction_2	21.1468082698075	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTGGAGAGATGTCTCAG	1983	False	NA	NA	False	AATAAA	-12	NA	16944843	17003984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_16945332_16976939_16977022_16978934_16979036_16990403_16990542_16992694_16992956_16998458_16998604_17000572_17000712_17002496_17002589_17003261
ENSMUSG00000020583.5_3	chr12	+	5246	7	ISM	ENSMUSG00000020583.5	ENSMUST00000020899.5	3014	8	6	542	6	-542	intron_retention	FALSE	canonical	2	12	junction_5	3.0368111930481	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAACGGCATGGTTGAT	NA	False	NA	NA	False	ATTAAA	-16	NA	8997934	9021486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_8998252_9001997_9002565_9005366_9005493_9008789_9008916_9011117_9011244_9013472_9013599_9017628
ENSMUSG00000020585.5_0	chr12	+	1355	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	403	15	403	-15	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	615	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTGTCCTTAAATGTGC	NA	False	NA	23	True	AATAAA	-14	NA	8972066	8988727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
ENSMUSG00000020589.18_0	chr12	+	4815	13	FSM	ENSMUSG00000020589.18	ENSMUST00000069066.14	9452	13	30	4607	0	2963	multi-exon	FALSE	canonical	3	12	junction_2	32.1829621936135	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATCATGTTTGTATATG	NA	False	NA	NA	False	ATTAAA	-20	NA	12312169	12426359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_12312240_12326343_12326417_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
ENSMUSG00000020589.18_11	chr12	+	2026	1	ISM	ENSMUSG00000020589.18	ENSMUST00000069066.14	9452	13	112194	4607	112144	2963	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATCATGTTTGTATATG	NA	False	NA	NA	False	ATTAAA	-20	NA	12424333	12426359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_12424300_12426400
ENSMUSG00000020589.18_2	chr12	+	4721	12	FSM	ENSMUSG00000020589.18	ENSMUST00000069005.10	1771	12	-2	-2948	-2	2948	multi-exon	FALSE	canonical	3	60	junction_1	14.2718586881045	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTACATACACAGTTTAAAA	NA	False	NA	NA	False	ATTAAA	-5	NA	12312175	12426344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_12312240_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
ENSMUSG00000020589.18_8	chr12	+	1420	11	ISM	ENSMUSG00000020589.18	ENSMUST00000223061.2	1782	13	41997	234	41991	-234	3prime_fragment	FALSE	canonical	3	85	junction_1	10.675204916066	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCGCTTGTGGTATGGTTT	8864	False	NA	NA	False	NA	NA	NA	12354180	12423106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
ENSMUSG00000020590.17_0	chr12	+	6244	26	NIC	ENSMUSG00000020590.17	novel	6231	26	NA	NA	10	-10	combination_of_known_junctions	FALSE	canonical	3	17	junction_17	18.4266763145175	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACAGTTCTGATGTGT	NA	False	NA	NA	False	AATAAA	-6	NA	35097194	35197468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567_35141670_35142823_35142913_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169731_35169905_35172916_35173025_35174428_35174540_35182019_35182182_35183307_35183380_35188024_35188171_35188398_35188468_35190166_35190280_35194087
ENSMUSG00000020590.17_2	chr12	+	6208	26	FSM	ENSMUSG00000020590.17	ENSMUST00000048519.17	6231	26	10	13	10	-13	multi-exon	FALSE	canonical	3	72	junction_14	10.0218960281975	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAACAAACAGTTCTGATG	NA	False	NA	NA	False	AATAAA	-3	NA	35097194	35197465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567_35141670_35142823_35142913_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169764_35169905_35172916_35173025_35174428_35174540_35182019_35182182_35183307_35183380_35188024_35188171_35188398_35188468_35190166_35190280_35194087
ENSMUSG00000020590.17_34	chr12	+	2601	1	ISM	ENSMUSG00000020590.17	ENSMUST00000048519.17	6231	26	97683	10	57944	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACAGTTCTGATGTGT	NA	False	NA	NA	False	AATAAA	-6	NA	35194867	35197468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_35194900_35197500
ENSMUSG00000020590.17_6	chr12	+	4105	25	NIC	ENSMUSG00000020590.17	novel	6231	26	NA	NA	9	64	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	21.6735565968199	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAAACCCTTTGGTGTA	NA	False	NA	NA	False	AATAAA	-7	NA	35097193	35195450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567_35141670_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169764_35169905_35172916_35173025_35174428_35174540_35182019_35182182_35183307_35183380_35188024_35188171_35188398_35188468_35190166_35190280_35194087
ENSMUSG00000020590.17_7	chr12	+	2501	20	ISM	ENSMUSG00000020590.17	ENSMUST00000163677.3	3681	23	8	9912	8	1783	5prime_fragment	TRUE	canonical	3	72	junction_14	10.4624377598204	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAAATTTGTGTACATG	NA	False	NA	NA	False	NA	NA	NA	35097192	35174770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567_35141670_35142823_35142913_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169764_35169905_35172916_35173025_35174428
ENSMUSG00000020592.15_0	chr12	+	2483	5	FSM	ENSMUSG00000020592.15	ENSMUST00000020911.14	3157	5	22	652	21	1	multi-exon	FALSE	canonical	3	214	junction_4	19.0574788468989	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTATGAACTCTACTGC	NA	False	NA	6	True	AATAAA	-15	NA	8821344	8843063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_8821702_8839406_8839489_8840384_8840867_8841290_8841427_8841637
ENSMUSG00000020592.15_8	chr12	+	1177	1	ISM	ENSMUSG00000020592.15	ENSMUST00000020911.14	3157	5	20570	646	20090	7	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACTCTACTGCTTCTGC	NA	False	NA	12	True	AATAAA	-21	NA	8841892	8843069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_8841900_8843100
ENSMUSG00000020593.17_0	chr12	-	5186	20	FSM	ENSMUSG00000020593.17	ENSMUST00000221230.2	4114	20	8	-1080	1	-6	multi-exon	FALSE	canonical	3	46	junction_15	24.5031514734934	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAATCAGGCATATGAAC	7247	False	NA	-28	True	AATAAA	-21	NA	16639766	16585960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
ENSMUSG00000020593.17_1	chr12	-	5285	21	FSM	ENSMUSG00000020593.17	ENSMUST00000067124.6	5581	21	5	291	1	-6	multi-exon	FALSE	canonical	3	67	junction_16	22.2780160696593	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAATCAGGCATATGAAC	7247	False	NA	-28	True	AATAAA	-21	NA	16639766	16585960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621264_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
ENSMUSG00000020593.17_13	chr12	-	5429	22	NIC	ENSMUSG00000020593.17	novel	5581	21	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	30	junction_21	35.2563659197666	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAATCAGGCATATGAAC	7247	False	NA	-28	True	AATAAA	-21	NA	16639766	16585960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621264_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16634508_16634653_16639718
ENSMUSG00000020593.17_4	chr12	-	5281	21	NNC	ENSMUSG00000020593.17	novel	5581	21	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_16	30.0886606548048	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAATCAGGCATATGAAC	7248	False	NA	-28	True	AATAAA	-21	NA	16639765	16585960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621261_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
ENSMUSG00000020593.17_7	chr12	-	5318	21	FSM	ENSMUSG00000020593.17	ENSMUST00000222989.2	4103	21	1	-1216	1	-18	multi-exon	FALSE	canonical	3	30	junction_20	37.3187620373452	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAAGACTTCTGAAAATC	7247	False	NA	-40	True	AATAAA	-9	NA	16639766	16585972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16634508_16634653_16639718
ENSMUSG00000020593.17_8	chr12	-	1814	1	ISM	ENSMUSG00000020593.17	ENSMUST00000067124.6	5581	21	51999	289	24267	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAGGCATATGAACTT	2012	False	NA	-26	True	AATAAA	-23	NA	16587772	16585958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_16586000_16587800
ENSMUSG00000020594.15_12	chr12	+	6139	21	FSM	ENSMUSG00000020594.15	ENSMUST00000111122.9	6311	21	136	36	-61	-32	multi-exon	TRUE	canonical	3	78	junction_1	34.6128227684481	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCTGGTCTTGTGT	NA	False	NA	9	True	TATAAA	-34	NA	8724359	8802525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_8724481_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8783272_8783510_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
ENSMUSG00000020594.15_64	chr12	+	3918	8	ISM	ENSMUSG00000020594.15	ENSMUST00000165293.8	6218	22	69611	32	410	-32	3prime_fragment	FALSE	canonical	3	135	junction_2	23.5787867303106	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCTGGTCTTGTGT	1449	False	NA	9	True	TATAAA	-34	NA	8793885	8802525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
ENSMUSG00000020594.15_71	chr12	+	3152	3	ISM	ENSMUSG00000020594.15	ENSMUST00000168361.8	6226	21	73760	113	4965	-89	3prime_fragment	FALSE	canonical	3	151	junction_1	24	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTTTGTATATTATGTA	6004	False	NA	-48	True	AATGAA	-9	NA	8798440	8802468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_8798520_8798760_8798954_8799588
ENSMUSG00000020594.15_72	chr12	+	3054	2	ISM	ENSMUSG00000020594.15	ENSMUST00000168361.8	6226	21	74156	56	5361	-32	3prime_fragment	FALSE	canonical	3	199	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCTGGTCTTGTGT	6400	False	NA	9	True	TATAAA	-34	NA	8798836	8802525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_8798954_8799588
ENSMUSG00000020594.15_73	chr12	+	2079	1	ISM	ENSMUSG00000020594.15	ENSMUST00000178015.8	5874	20	76313	56	6971	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCTGGTCTTGTGT	8010	False	NA	9	True	TATAAA	-34	NA	8800446	8802525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_8800400_8802500
ENSMUSG00000020594.15_9	chr12	+	5855	20	FSM	ENSMUSG00000020594.15	ENSMUST00000169089.8	3295	20	-108	-2452	-59	-77	multi-exon	FALSE	canonical	3	62	junction_12	35.415538790362	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATGTATAAATTAGAAAA	NA	False	NA	-36	True	AATGAA	-21	NA	8724361	8802480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_8724481_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
ENSMUSG00000020599.14_2	chr11	-	968	12	NNC	ENSMUSG00000020599.14	novel	2313	17	NA	NA	8490	7967	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	5.1889902519383	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGGTTTGTTTGATTT	NA	False	NA	NA	False	TTTAAA	-39	NA	109180402	109138860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_109139004_109139804_109139867_109140852_109140883_109150661_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180257
ENSMUSG00000020599.14_3	chr11	-	2206	10	NNC	ENSMUSG00000020599.14	novel	3464	10	NA	NA	8492	-1232	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	5.53774924194538	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGATATATATCTTTATA	NA	False	NA	NA	False	NA	NA	NA	109180400	109148059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_109149526_109150652_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180257
ENSMUSG00000020599.14_5	chr11	-	1782	11	NNC	ENSMUSG00000020599.14	novel	3464	10	NA	NA	8493	-1549	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.0776981498753	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTGTGTCTTTATTATT	NA	False	NA	NA	False	NA	NA	NA	109180399	109148376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_109148571_109148676_109149526_109150652_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180257
ENSMUSG00000020601.9_0	chr12	-	4080	4	NIC	ENSMUSG00000020601.9	novel	4198	3	NA	NA	20	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	1.63299316185545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAAAGTTTGGGGCCTC	NA	False	NA	NA	False	AATAAA	-14	NA	15866858	15841733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_15844078_15859696_15859990_15865231_15866600_15866783
ENSMUSG00000020601.9_1	chr12	-	4204	3	FSM	ENSMUSG00000020601.9	ENSMUST00000020922.8	4198	3	-12	6	-12	-6	multi-exon	FALSE	canonical	0	0	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAAAGTTTGGGGCCTC	NA	False	NA	NA	False	AATAAA	-14	NA	15866798	15841733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_15844078_15859696_15859990_15865231
ENSMUSG00000020604.14_17	chr11	+	3208	12	NIC	ENSMUSG00000020604.14	novel	3273	14	NA	NA	-94	-9	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	1.89823754707465	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAACTCACAAATGCATT	321	False	NA	NA	False	AATAAA	-6	NA	109364105	109464142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_109364248_109380593_109381477_109408067_109408256_109412482_109412531_109416208_109416321_109418571_109418710_109424734_109424932_109426082_109426164_109438839_109438949_109448776_109448898_109454007_109454099_109463044
ENSMUSG00000020604.14_4	chr11	+	3278	13	NNC	ENSMUSG00000020604.14	novel	3273	14	NA	NA	-24	-9	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	2.62466929133727	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAACTCACAAATGCATT	391	False	NA	NA	False	AATAAA	-6	NA	109364175	109464142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_109364248_109369195_109369336_109380593_109381477_109408067_109408256_109412482_109412531_109416208_109416321_109418571_109418710_109424734_109424932_109426082_109426164_109438839_109438949_109448776_109448898_109454007_109454099_109463044
ENSMUSG00000020605.10_0	chr12	+	2936	7	FSM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	13	10	13	-10	multi-exon	FALSE	canonical	3	118	junction_1	12.8765506078125	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCAGAATTTCAGTGTT	NA	False	NA	NA	False	AGTAAA	-14	NA	8363444	8393814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
ENSMUSG00000020605.10_10	chr12	+	1645	1	ISM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	28738	10	24559	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCAGAATTTCAGTGTT	NA	False	NA	NA	False	AGTAAA	-14	NA	8392169	8393814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_8392200_8393800
ENSMUSG00000020605.10_8	chr12	+	2349	4	ISM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	10596	12	6417	-12	3prime_fragment	FALSE	canonical	3	139	junction_1	7.93025150224688	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGCCAGAATTTCAGTG	NA	False	NA	NA	False	AGTAAA	-12	NA	8374027	8393812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_8374102_8386237_8386396_8387632_8387769_8391831
ENSMUSG00000020607.8_0	chr12	-	3414	2	FSM	ENSMUSG00000020607.8	ENSMUST00000020926.8	4164	2	-15	765	-15	-765	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCAACAGGACTCCTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	14202070	14197595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_14200762_14201822
ENSMUSG00000020608.8_1	chr12	+	3822	27	FSM	ENSMUSG00000020608.8	ENSMUST00000020931.6	5603	27	241	1540	-2	202	multi-exon	FALSE	canonical	3	574	junction_19	50.8148542090207	1195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGTGTTTCCAGGT	4558	False	NA	13	True	AATAAA	-14	NA	11316127	11368246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
ENSMUSG00000020608.8_10	chr12	+	3597	25	NIC	ENSMUSG00000020608.8	novel	5272	26	NA	NA	-1	202	combination_of_known_junctions	FALSE	canonical	3	100	junction_2	124.985825585233	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGTGTTTCCAGGT	4559	False	NA	13	True	AATAAA	-14	NA	11316128	11368246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_11316290_11321729_11321873_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
ENSMUSG00000020608.8_2	chr12	+	2093	10	FSM	ENSMUSG00000020608.8	ENSMUST00000218866.2	3373	10	2	1278	1	-1278	multi-exon	FALSE	canonical	3	624	junction_2	43.5943704599856	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATATTTGATTCTGTTTA	4562	False	NA	NA	False	NA	NA	NA	11316131	11336377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311
ENSMUSG00000020608.8_3	chr12	+	3726	26	FSM	ENSMUSG00000020608.8	ENSMUST00000218022.2	5272	26	12	1534	-12	202	multi-exon	TRUE	canonical	3	71	junction_3	127.798754297528	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGTGTTTCCAGGT	4548	False	NA	13	True	AATAAA	-14	NA	11316117	11368246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
ENSMUSG00000020610.18_1	chr11	+	1595	9	FSM	ENSMUSG00000020610.18	ENSMUST00000092500.11	2816	9	41	1180	5	-21	multi-exon	FALSE	canonical	3	91	junction_1	26.8953411393126	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATACTTTGAAAATC	NA	False	NA	-2	True	NA	NA	NA	109316812	109327794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
ENSMUSG00000020610.18_13	chr11	+	1193	5	ISM	ENSMUSG00000020610.18	ENSMUST00000125108.2	1846	6	217	891	-21	-891	3prime_fragment	FALSE	canonical	3	149	junction_3	13.4257215820976	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGTGTTTTCTGTAG	NA	False	NA	9	True	AATAAA	-27	NA	109317024	109320980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749
ENSMUSG00000020610.18_9	chr11	+	1647	8	FSM	ENSMUSG00000020610.18	ENSMUST00000103061.3	1832	8	-47	232	-41	-232	multi-exon	FALSE	canonical	3	149	junction_3	12.4638252063927	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTTCGTGGGTAGAGTT	NA	False	NA	11	True	AATAAA	-13	NA	109317004	109327583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
ENSMUSG00000020611.15_1	chr11	+	6139	4	FSM	ENSMUSG00000020611.15	ENSMUST00000020930.14	6160	4	13	8	13	-8	multi-exon	FALSE	canonical	3	267	junction_2	46.1976430375211	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGACCTGGTAGCACG	NA	False	NA	4	True	AATAAA	-6	NA	109253669	109292187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_109254083_109256361_109256589_109283171_109283223_109286739
ENSMUSG00000020611.15_12	chr11	+	3422	1	ISM	ENSMUSG00000020611.15	ENSMUST00000020930.14	6160	4	35110	7	35110	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGACCTGGTAGCACGA	NA	False	NA	5	True	AATAAA	-7	NA	109288766	109292188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_109288800_109292200
ENSMUSG00000020611.15_2	chr11	+	917	3	FSM	ENSMUSG00000020611.15	ENSMUST00000106702.4	914	3	-4	1	-4	-1	multi-exon	TRUE	canonical	3	100	junction_2	132.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTATGTCCTCTTTTGC	NA	False	NA	8	True	AATAAA	-17	NA	109253652	109271300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_109254083_109256361_109256589_109271040
ENSMUSG00000020612.17_2	chr11	+	3301	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	28	30	28	-30	multi-exon	TRUE	canonical	3	1417	junction_9	119.858458191318	1804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAGATGAAATAAT	NA	False	NA	-10	True	NA	NA	NA	109541774	109560452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
ENSMUSG00000020612.17_32	chr11	+	1757	1	ISM	ENSMUSG00000020612.17	ENSMUST00000106677.8	3513	12	18482	13	1943	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAAATTCTTAAACGAA	NA	False	NA	7	True	AATAAA	-12	NA	109558712	109560469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_109558700_109560500
ENSMUSG00000020617.14_0	chr11	-	445	3	ISM	ENSMUSG00000020617.14	ENSMUST00000020941.11	919	5	30708	4	16760	-4	3prime_fragment	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTTGTATGGTGGTCCC	NA	False	NA	NA	False	NA	NA	NA	109688140	109682386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_109682621_109684931_109685106_109688103
ENSMUSG00000020621.7_0	chr12	+	1392	2	FSM	ENSMUSG00000020621.7	ENSMUST00000020947.7	1480	2	87	1	87	-1	multi-exon	FALSE	canonical	3	67	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTGTGCATTTCTTTA	NA	False	NA	10	True	AATAAA	-16	NA	10440858	10445561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_10441227_10444537
ENSMUSG00000020623.12_0	chr11	+	2059	12	FSM	ENSMUSG00000020623.12	ENSMUST00000020949.12	2068	12	6	3	6	-3	multi-exon	FALSE	canonical	3	81	junction_7	8.31308835611224	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGTGGCATAGTATTA	NA	False	NA	11	True	AGTAAA	-21	NA	110289953	110404464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381702_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
ENSMUSG00000020623.12_1	chr11	+	1997	12	FSM	ENSMUSG00000020623.12	ENSMUST00000146084.8	1869	12	-131	3	6	-3	multi-exon	FALSE	canonical	0	0	junction_4	29.7790763528648	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGTGGCATAGTATTA	NA	False	NA	11	True	AGTAAA	-21	NA	110289953	110404464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381640_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
ENSMUSG00000020628.17_0	chr12	-	2789	12	FSM	ENSMUSG00000020628.17	ENSMUST00000168129.10	3230	12	51	390	8	-389	multi-exon	FALSE	canonical	3	62	junction_11	21.4240924087157	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATCACAGTTCATTGT	8281	False	NA	-10	True	NA	NA	NA	28800420	28741016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800327
ENSMUSG00000020628.17_2	chr12	-	2945	12	FSM	ENSMUSG00000020628.17	ENSMUST00000020954.15	3377	12	51	381	-20	-381	multi-exon	FALSE	canonical	3	61	junction_11	21.61993264567	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTCATTGTCTTCCTCC	8300	False	NA	-2	True	NA	NA	NA	28800401	28741008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800160
ENSMUSG00000020628.17_3	chr12	-	2254	11	ISM	ENSMUSG00000020628.17	ENSMUST00000020954.15	3377	12	3359	389	3283	-389	3prime_fragment	FALSE	canonical	3	94	junction_7	16.5242246414166	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATCACAGTTCATTGT	NA	False	NA	-10	True	NA	NA	NA	28797093	28741016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297
ENSMUSG00000020629.13_0	chr12	+	1648	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	-2	6	-2	-6	multi-exon	FALSE	canonical	3	316	junction_2	13.6950923894494	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACTTGGTCTCTCGAG	NA	False	NA	9	True	NA	NA	NA	28725227	28732168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
ENSMUSG00000020629.13_8	chr12	+	1316	2	ISM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	4227	6	1653	-6	3prime_fragment	FALSE	canonical	3	318	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACTTGGTCTCTCGAG	NA	False	NA	9	True	NA	NA	NA	28729456	28732168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_28729569_28730964
ENSMUSG00000020630.10_1	chr12	+	1419	8	FSM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	32	4	10	0	multi-exon	FALSE	canonical	3	155	junction_3	35.1318217284442	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAACACATCTAGTTTGA	NA	False	NA	9	True	AATAAA	-17	NA	28699632	28709584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
ENSMUSG00000020630.10_21	chr12	+	510	1	ISM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	9472	6	5422	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAACACATCTAGTTT	NA	False	NA	7	True	AATAAA	-15	NA	28709072	28709582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_28709100_28709600
ENSMUSG00000020630.10_4	chr12	+	1417	8	NIC	ENSMUSG00000020630.10	novel	1455	8	NA	NA	8	0	combination_of_known_splicesites	TRUE	canonical	3	22	junction_5	81.9245546406035	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAACACATCTAGTTTGA	NA	False	NA	9	True	AATAAA	-17	NA	28699630	28709584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707635_28707717_28708169_28708295_28708991
ENSMUSG00000020630.10_5	chr12	+	3783	7	NIC	ENSMUSG00000020630.10	novel	1455	8	NA	NA	4	0	intron_retention	FALSE	canonical	3	224	junction_2	15.4775823549919	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAACACATCTAGTTT	NA	False	NA	7	True	AATAAA	-15	NA	28699626	28709582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_28699816_28702023_28702140_28703061_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
ENSMUSG00000020634.13_0	chr12	-	2488	7	FSM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	207	1	-59	-1	multi-exon	FALSE	canonical	3	1036	junction_3	130.609362434534	821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGGTGTGGTTGTACAT	NA	False	NA	-7	True	GATAAA	-12	NA	4957498	4929032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
ENSMUSG00000020634.13_74	chr12	-	1124	6	ISM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	207	4416	-59	-3058	5prime_fragment	FALSE	canonical	3	1036	junction_2	139.123542220575	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATTTCTTCCTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	4957498	4933447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
ENSMUSG00000020635.9_0	chr12	-	924	4	FSM	ENSMUSG00000020635.9	ENSMUST00000020964.7	976	4	39	13	39	-13	multi-exon	FALSE	canonical	3	44	junction_1	6.34209919681348	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTCCTGTTCATCGTGTT	NA	False	NA	-13	True	AATAAA	-16	NA	4891552	4883186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_4883796_4884738_4884852_4888168_4888217_4891398
ENSMUSG00000020635.9_2	chr12	-	916	4	FSM	ENSMUSG00000020635.9	ENSMUST00000219880.2	246	4	-66	-604	-66	-15	multi-exon	FALSE	canonical	1	5	junction_1	23.2999761564017	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCTTCCTGTTCATCGTG	NA	False	NA	-15	True	AATAAA	-14	NA	4891501	4883188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_4883841_4884738_4884852_4888168_4888217_4891398
ENSMUSG00000020638.9_0	chr12	+	3187	5	FSM	ENSMUSG00000020638.9	ENSMUST00000020969.5	3200	5	10	3	10	-3	multi-exon	FALSE	canonical	2	4	junction_3	0.433012701892219	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCTGTTCGTCATCATT	NA	False	NA	NA	False	AATAAA	-17	NA	26519212	26529833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_26520026_26521404_26521520_26523994_26524197_26527004_26527239_26528010
ENSMUSG00000020639.15_2	chr12	+	2124	4	FSM	ENSMUSG00000020639.15	ENSMUST00000020967.11	1306	4	-284	-534	-11	-8	multi-exon	FALSE	canonical	1	2	junction_2	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCACAGTGCATGTGTGA	1344	False	NA	NA	False	ATTAAA	-5	NA	4819010	4828800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4820270_4824391_4824530_4825419_4825526_4828179
ENSMUSG00000020640.11_10	chr12	+	6985	29	NIC	ENSMUSG00000020640.11	novel	5987	39	NA	NA	17	-11	combination_of_known_junctions	FALSE	canonical	3	13	junction_28	17.6486037489008	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCCATTACTTGTATTG	7403	False	NA	7	True	ATTAAA	-8	NA	4643024	4729495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_4643233_4663242_4663306_4674890_4674984_4676529_4676594_4677832_4677997_4679544_4679752_4679867_4679965_4680636_4680777_4682373_4682438_4682935_4683074_4683476_4683563_4684534_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654_4689795_4699982_4700120_4702350_4702488_4703445_4703544_4708014_4708191_4708441_4708572_4711858_4712065_4714536_4714623_4716159_4716327_4721272_4721319_4721401_4721524_4722736_4722834_4723415_4723608_4726210
ENSMUSG00000020640.11_11	chr12	+	4458	28	ISM	ENSMUSG00000020640.11	ENSMUST00000062580.8	5987	39	29	39573	-25	210	5prime_fragment	FALSE	canonical	3	59	junction_17	12.5285955496691	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTCAAAAAAAAAAAAAAAA	7415	False	NA	NA	False	NA	NA	NA	4643036	4724377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_4643233_4663242_4663306_4674890_4674984_4676529_4676594_4677832_4677997_4679544_4679752_4679867_4679965_4680636_4680777_4682373_4682438_4682935_4683074_4683476_4683563_4684534_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654_4689795_4699982_4700120_4702350_4702488_4703445_4703544_4708014_4708191_4708441_4708572_4711858_4712065_4714536_4714623_4716159_4716327_4721272_4721319_4721401_4721524_4722736_4722834_4723415
ENSMUSG00000020640.11_2	chr12	+	5888	39	NIC	ENSMUSG00000020640.11	novel	4977	38	NA	NA	166	-2	combination_of_known_junctions	TRUE	canonical	3	9	junction_1	16.9216255939665	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATCCTTTCAAAGCTTGA	7182	False	NA	NA	False	AATAAA	-18	NA	4642803	4763948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_4642932_4663242_4663306_4674890_4674984_4676529_4676594_4677832_4677997_4679544_4679752_4679867_4679965_4680636_4680777_4682373_4682438_4682935_4683074_4683476_4683563_4684534_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654_4689795_4699982_4700120_4702350_4702488_4703445_4703544_4708014_4708191_4708441_4708572_4711858_4712065_4714536_4714623_4716159_4716327_4721272_4721319_4721401_4721524_4722736_4722834_4723415_4723608_4747141_4747264_4750319_4750427_4751181_4751366_4756259_4756359_4756964_4757133_4757529_4757746_4758112_4758235_4758944_4759028_4761952_4762037_4762466_4762641_4763039
ENSMUSG00000020640.11_3	chr12	+	5956	39	FSM	ENSMUSG00000020640.11	ENSMUST00000062580.8	5987	39	26	5	26	-5	multi-exon	FALSE	canonical	3	57	junction_33	12.8594576467878	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAATCCTTTCAAAGCT	7412	False	NA	NA	False	AATAAA	-15	NA	4643033	4763945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4643233_4663242_4663306_4674890_4674984_4676529_4676594_4677832_4677997_4679544_4679752_4679867_4679965_4680636_4680777_4682373_4682438_4682935_4683074_4683476_4683563_4684534_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654_4689795_4699982_4700120_4702350_4702488_4703445_4703544_4708014_4708191_4708441_4708572_4711858_4712065_4714536_4714623_4716159_4716327_4721272_4721319_4721401_4721524_4722736_4722834_4723415_4723608_4747141_4747264_4750319_4750427_4751181_4751366_4756259_4756359_4756964_4757133_4757529_4757746_4758112_4758235_4758944_4759028_4761952_4762037_4762466_4762641_4763039
ENSMUSG00000020640.11_41	chr12	+	2290	1	ISM	ENSMUSG00000020640.11	ENSMUST00000217672.2	5431	18	42437	4	12678	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTTGTATTGTGTATTT	7051	False	NA	14	True	ATTAAA	-15	NA	4727212	4729502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_4727200_4729500
ENSMUSG00000020641.17_1	chr12	-	3760	6	FSM	ENSMUSG00000020641.17	ENSMUST00000020970.10	3782	6	17	5	-4	2	multi-exon	FALSE	canonical	0	0	junction_5	1.01980390271856	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTCTGTGTTAGTATC	NA	False	NA	NA	False	ATTAAA	-18	NA	26506434	26492749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_26495570_26497150_26497184_26498581_26498732_26500544_26500775_26504016_26504179_26506069
ENSMUSG00000020642.14_0	chr12	-	5005	9	FSM	ENSMUSG00000020642.14	ENSMUST00000062149.6	4812	9	-49	-144	-11	-96	multi-exon	FALSE	canonical	3	23	junction_8	8.26041009877839	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTATTGTGTCTTATGT	8823	False	NA	-7	True	AATACA	-7	NA	26465264	26356888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_26360789_26364018_26364109_26367647_26367796_26370950_26371159_26377276_26377338_26377501_26377607_26389304_26389451_26439392_26439575_26465099
ENSMUSG00000020642.14_11	chr12	-	4853	8	NIC	ENSMUSG00000020642.14	novel	4812	9	NA	NA	8	-9	intron_retention	FALSE	canonical	0	0	junction_7	13.4528655622783	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAACCCTGCCTGGCTCC	8880	False	NA	-10	True	AATACA	-12	NA	26465207	26356801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_26360789_26364018_26364109_26367647_26367796_26370950_26371159_26377276_26377338_26377501_26377607_26389304_26389451_26465099
ENSMUSG00000020642.14_16	chr12	-	4100	3	ISM	ENSMUSG00000020642.14	ENSMUST00000020971.14	5164	10	97585	7	-7283	-7	3prime_fragment	FALSE	canonical	3	30	junction_2	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCCTGCCTGGCTCCAT	NA	False	NA	-8	True	AATACA	-14	NA	26367668	26356799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_26360789_26364018_26364109_26367647
ENSMUSG00000020642.14_2	chr12	-	3383	1	NIC	ENSMUSG00000020642.14	novel	343	2	NA	NA	6	-96	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTATTGTGTCTTATGT	NA	False	NA	-7	True	AATACA	-7	NA	26360271	26356888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_26356900_26360300
ENSMUSG00000020642.14_3	chr12	-	5164	10	FSM	ENSMUSG00000020642.14	ENSMUST00000020971.14	5164	10	-11	11	-11	-11	multi-exon	FALSE	canonical	3	6	junction_8	13.9133118599987	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTAAACCCTGCCTGGCT	8823	False	NA	-12	True	AATACA	-10	NA	26465264	26356803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_26360789_26364018_26364109_26367647_26367796_26370950_26371159_26377276_26377338_26377501_26377607_26389304_26389451_26439392_26439575_26455317_26455392_26465099
ENSMUSG00000020644.10_0	chr12	-	1263	3	FSM	ENSMUSG00000020644.10	ENSMUST00000020974.7	1270	3	2	5	2	-5	multi-exon	FALSE	canonical	2	5	junction_1	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAATGCCGGGATTCTG	NA	False	NA	NA	False	AATAAA	-10	NA	25146089	25143804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_25144576_25145309_25145374_25145661
ENSMUSG00000020646.18_2	chr12	+	2801	13	FSM	ENSMUSG00000020646.18	ENSMUST00000110942.11	2351	13	-39	-411	-25	-1	multi-exon	FALSE	canonical	3	86	junction_3	25.3874148611735	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTCTTGTTAAAATGGG	NA	False	NA	NA	False	ATTAAA	-45	NA	24881582	25010284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24974197_24974294_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
ENSMUSG00000020646.18_3	chr12	+	2708	12	FSM	ENSMUSG00000020646.18	ENSMUST00000221952.2	6792	12	-24	4108	-24	3	multi-exon	FALSE	canonical	3	26	junction_3	37.4053074415034	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTTAAAATGGGTGTT	NA	False	NA	NA	False	ATTAAA	-15	NA	24881583	25010288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
ENSMUSG00000020646.18_35	chr12	+	4601	1	ISM	ENSMUSG00000020646.18	ENSMUST00000221952.2	6792	12	128183	5	128161	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGAACCTGTGTTTGTG	NA	False	NA	NA	False	ATTAAA	-9	NA	25009790	25014391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_25009800_25014400
ENSMUSG00000020646.18_5	chr12	+	1983	11	NIC	ENSMUSG00000020646.18	novel	2351	13	NA	NA	-24	-182	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	41.3908202383089	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGTTTTCTTAAGGTAT	NA	False	NA	7	True	AATAAA	-14	NA	24881583	25009691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_24881774_24974197_24974294_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
ENSMUSG00000020646.18_8	chr12	+	1842	9	NIC	ENSMUSG00000020646.18	novel	2467	10	NA	NA	-34	-181	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	45.2493093869951	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGTTTTCTTAAGGTATC	NA	False	NA	8	True	AATAAA	-15	NA	24881573	25009692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_24881774_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
ENSMUSG00000020647.11_0	chr12	-	5221	23	FSM	ENSMUSG00000020647.11	ENSMUST00000085814.5	7329	23	12	2096	12	-7	multi-exon	FALSE	canonical	3	76	junction_22	13.9950552070342	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	4527170	4299457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_4299751_4299835_4299891_4303656_4303747_4309211_4309396_4313433_4313609_4317606_4318010_4320746_4320849_4324693_4325009_4325172_4325342_4328101_4328220_4340813_4340995_4344909_4346249_4347475_4347624_4356423_4356565_4363025_4363122_4365685_4365866_4372867_4373046_4385780_4385879_4389017_4389185_4394396_4394503_4404360_4404510_4466670_4466806_4526771
ENSMUSG00000020647.11_11	chr12	-	5217	23	NIC	ENSMUSG00000020647.11	novel	7329	23	NA	NA	13	-7	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	21.3102330596794	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	4527169	4299457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_4299748_4299835_4299891_4303656_4303747_4309211_4309396_4313433_4313609_4317606_4318010_4320746_4320849_4324693_4325009_4325172_4325342_4328101_4328220_4340813_4340995_4344909_4346249_4347475_4347624_4356423_4356565_4363025_4363122_4365685_4365866_4372867_4373046_4385780_4385879_4389017_4389185_4394396_4394503_4404360_4404510_4466670_4466806_4526771
ENSMUSG00000020647.11_3	chr12	-	5168	22	NIC	ENSMUSG00000020647.11	novel	7329	23	NA	NA	10	-7	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	24.557951268816	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	4527172	4299457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_4299751_4303656_4303747_4309211_4309396_4313433_4313609_4317606_4318010_4320746_4320849_4324693_4325009_4325172_4325342_4328101_4328220_4340813_4340995_4344909_4346249_4347475_4347624_4356423_4356565_4363025_4363122_4365685_4365866_4372867_4373046_4385780_4385879_4389017_4389185_4394396_4394503_4404360_4404510_4466670_4466806_4526771
ENSMUSG00000020648.4_0	chr12	-	1748	7	FSM	ENSMUSG00000020648.4	ENSMUST00000020977.4	1773	7	21	4	1	-4	multi-exon	FALSE	canonical	2	86	junction_6	14.7016627933336	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGACGGTATGACTCGCC	9081	False	NA	-9	True	AATAAA	-13	NA	31704804	31690052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_31690944_31691500_31691728_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
ENSMUSG00000020648.4_4	chr12	-	1217	3	ISM	ENSMUSG00000020648.4	ENSMUST00000020977.4	1773	7	11966	2	11916	-2	3prime_fragment	FALSE	canonical	3	98	junction_2	15.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGGTATGACTCGCCTG	NA	False	NA	-7	True	AATAAA	-15	NA	31692859	31690050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_31690944_31691500_31691728_31692762
ENSMUSG00000020648.4_6	chr12	-	1617	6	NIC	ENSMUSG00000020648.4	novel	1773	7	NA	NA	12	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	45.1025498170558	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGGTATGACTCGCCTG	9092	False	NA	-7	True	AATAAA	-15	NA	31704793	31690050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_31690944_31691500_31691728_31692762_31692886_31696619_31696738_31702289_31702441_31704688
ENSMUSG00000020648.4_7	chr12	-	3983	6	ISM	ENSMUSG00000020648.4	ENSMUST00000020977.4	1773	7	36	2	-14	-2	intron_retention	FALSE	canonical	3	98	junction_2	10.3614670775909	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGGTATGACTCGCCTG	9096	False	NA	-7	True	AATAAA	-15	NA	31704789	31690050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_31690944_31691500_31691728_31692762_31692886_31696619_31696738_31698764_31698887_31702289
ENSMUSG00000020649.12_1	chr12	+	2096	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	43	54	43	-54	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	8012	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTTTCATGGCATACA	NA	False	NA	18	True	AATAAA	-18	NA	24758282	24764091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
ENSMUSG00000020650.16_1	chr12	-	1745	8	FSM	ENSMUSG00000020650.16	ENSMUST00000177962.9	6155	8	-2	4412	-2	-18	multi-exon	FALSE	canonical	3	313	junction_3	46.0678293167714	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATATAAAAGAAAATGCAA	NA	False	NA	NA	False	NA	NA	NA	31684636	31645377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261_31684380_31684603
ENSMUSG00000020650.16_9	chr12	-	1713	7	FSM	ENSMUSG00000020650.16	ENSMUST00000020979.9	1949	7	218	18	218	-18	multi-exon	FALSE	canonical	3	313	junction_3	46.7618077780005	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATATAAAAGAAAATGCAA	NA	False	NA	NA	False	NA	NA	NA	31684380	31645377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261
ENSMUSG00000020652.18_2	chr12	-	2139	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	14.9666295470958	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAACACCTGCAGATTCTT	NA	False	NA	-12	True	AATAAA	-16	NA	4283933	4263484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283781
ENSMUSG00000020652.18_3	chr12	-	2226	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	-12	-3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	27.9026084005699	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAACACCTGCAGATTCTT	NA	False	NA	-12	True	AATAAA	-16	NA	4283950	4263484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281445_4281683_4283530_4283658_4283781
ENSMUSG00000020652.18_4	chr12	-	1833	5	ISM	ENSMUSG00000020652.18	ENSMUST00000140975.8	4348	7	2642	1815	351	0	3prime_fragment	FALSE	canonical	3	73	junction_2	10.256095748383	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGCAGATTCTTTGT	NA	False	NA	-9	True	AATAAA	-19	NA	4281652	4263481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515
ENSMUSG00000020652.18_6	chr12	-	2169	7	FSM	ENSMUSG00000020652.18	ENSMUST00000140975.8	4348	7	361	1818	5	-3	multi-exon	FALSE	canonical	3	46	junction_6	17.0953209972788	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAACACCTGCAGATTCTT	NA	False	NA	-12	True	AATAAA	-16	NA	4283933	4263484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751
ENSMUSG00000020652.18_8	chr12	-	874	1	ISM	ENSMUSG00000020652.18	ENSMUST00000140975.8	4348	7	19936	1818	2148	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAACACCTGCAGATTCTT	NA	False	NA	-12	True	AATAAA	-16	NA	4264358	4263484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_4263500_4264400
ENSMUSG00000020653.13_0	chr12	+	3968	4	FSM	ENSMUSG00000020653.13	ENSMUST00000020982.7	4086	4	105	13	105	-13	multi-exon	FALSE	canonical	3	234	junction_3	19.258475767539	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAGACTTGAGTGATGT	NA	False	NA	5	True	TATAAA	-16	NA	24701377	24712775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_24701566_24703557_24703810_24704841_24705776_24710181
ENSMUSG00000020653.13_10	chr12	+	2170	1	ISM	ENSMUSG00000020653.13	ENSMUST00000020982.7	4086	4	9333	13	8453	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAGACTTGAGTGATGT	1611	False	NA	5	True	TATAAA	-16	NA	24710605	24712775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_24710600_24712800
ENSMUSG00000020653.13_9	chr12	+	3256	2	ISM	ENSMUSG00000020653.13	ENSMUST00000020982.7	4086	4	3841	13	2961	-13	3prime_fragment	FALSE	canonical	3	234	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAGACTTGAGTGATGT	NA	False	NA	5	True	TATAAA	-16	NA	24705113	24712775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_24705776_24710181
ENSMUSG00000020654.16_0	chr12	+	4746	22	NIC	ENSMUSG00000020654.16	novel	4728	22	NA	NA	-17	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	15.3109863775942	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGACTGTTGTGGCAAT	NA	False	NA	6	True	ATTAAA	-16	NA	4183379	4263523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_4183779_4184152_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258576_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ENSMUSG00000020654.16_11	chr12	+	3889	21	FSM	ENSMUSG00000020654.16	ENSMUST00000020984.9	4348	21	457	2	457	-2	multi-exon	FALSE	canonical	3	41	junction_14	11.273863579093	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGAGACTGTTGTGGCAA	NA	False	NA	5	True	ATTAAA	-15	NA	4184609	4263522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258576_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ENSMUSG00000020654.16_2	chr12	+	4710	22	NIC	ENSMUSG00000020654.16	novel	4672	22	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	14.8737696951146	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGACTGTTGTGGCAATT	NA	False	NA	7	True	ATTAAA	-17	NA	4183357	4263524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_4183720_4184152_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258576_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ENSMUSG00000020654.16_4	chr12	+	4701	22	FSM	ENSMUSG00000020654.16	ENSMUST00000124505.8	4962	22	260	1	-33	0	multi-exon	FALSE	canonical	3	17	junction_1	15.5787808476277	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGACTGTTGTGGCAATT	NA	False	NA	7	True	ATTAAA	-17	NA	4183363	4263524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4183720_4184152_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258579_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ENSMUSG00000020654.16_5	chr12	+	4739	22	FSM	ENSMUSG00000020654.16	ENSMUST00000152065.8	4728	22	-18	7	-18	-6	multi-exon	FALSE	canonical	3	14	junction_1	15.9929122623238	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGATGAGACTGTTGTG	NA	False	NA	1	True	ATTAAA	-11	NA	4183378	4263518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4183779_4184152_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258579_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ENSMUSG00000020654.16_7	chr12	+	4737	22	NIC	ENSMUSG00000020654.16	novel	4672	22	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	14.8737696951146	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGACTGTTGTGGCAATT	NA	False	NA	7	True	ATTAAA	-17	NA	4183395	4263524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_4183779_4184146_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258576_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ENSMUSG00000020654.16_8	chr12	+	4972	22	NIC	ENSMUSG00000020654.16	novel	4728	22	NA	NA	52	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	15.5787808476277	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGAGACTGTTGTGGCAA	NA	False	NA	5	True	ATTAAA	-15	NA	4183155	4263522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_4183779_4184146_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258579_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
ENSMUSG00000020656.17_1	chr12	+	3391	15	NIC	ENSMUSG00000020656.17	novel	3469	16	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	1	3	junction_8	6.88869230207396	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGTGTCGGCTCCTGTT	NA	False	NA	NA	False	TTTAAA	-32	NA	24622281	24667386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_24622458_24625912_24626100_24628018_24628090_24631326_24631718_24634303_24634461_24634832_24634945_24636054_24636150_24652906_24653066_24658027_24658080_24658431_24658572_24659702_24659741_24661821_24661914_24662153_24662240_24664393_24664459_24665816
ENSMUSG00000020656.17_3	chr12	+	3466	16	FSM	ENSMUSG00000020656.17	ENSMUST00000085553.13	3469	16	-3	6	-3	-6	multi-exon	FALSE	canonical	1	3	junction_5	7.44938476206816	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCACAAGGTGTCGGCTC	NA	False	NA	NA	False	TTTAAA	-27	NA	24622278	24667381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_24622458_24625912_24626100_24628018_24628090_24631326_24631718_24632883_24632961_24634303_24634461_24634832_24634945_24636054_24636150_24652906_24653066_24658027_24658080_24658431_24658572_24659702_24659741_24661821_24661914_24662153_24662240_24664393_24664459_24665816
ENSMUSG00000020656.17_4	chr12	+	1100	5	NIC	ENSMUSG00000020656.17	novel	3267	9	NA	NA	-14	-12332	combination_of_known_splicesites	FALSE	canonical	3	9	junction_4	7.36121593216773	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCTGCGTGCTTTGTT	NA	False	NA	NA	False	AATAAA	-17	NA	24622267	24634564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_24622458_24625912_24626100_24628018_24628090_24631326_24631718_24634303
ENSMUSG00000020656.17_5	chr12	+	2590	4	ISM	ENSMUSG00000020656.17	ENSMUST00000221426.2	3267	9	-8	13418	-4	-13418	intron_retention	FALSE	canonical	3	20	junction_2	3.29983164553722	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCCAGGATTCCATTTT	NA	False	NA	NA	False	AATAAA	-24	NA	24622277	24633478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_24622458_24625912_24626100_24628018_24628090_24631326
ENSMUSG00000020657.17_0	chr12	+	4373	9	FSM	ENSMUSG00000020657.17	ENSMUST00000219923.2	2934	9	-47	-1392	-1	-10	multi-exon	FALSE	canonical	2	4	junction_7	12.4492720670728	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGCAAACACTGGTCTG	NA	False	NA	-2	True	AGTAAA	-4	NA	4132581	4160596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4132874_4135953_4136037_4139133_4139204_4146212_4146378_4147223_4147347_4153053_4153215_4156801_4157044_4157158_4157349_4157549
ENSMUSG00000020657.17_10	chr12	+	2601	1	ISM	ENSMUSG00000020657.17	ENSMUST00000020986.15	4698	7	25413	10	19414	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGCAAACACTGGTCTG	NA	False	NA	-2	True	AGTAAA	-4	NA	4157995	4160596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_4158000_4160600
ENSMUSG00000020657.17_11	chr12	+	3335	2	ISM	ENSMUSG00000020657.17	ENSMUST00000219923.2	2934	9	24432	-1392	18479	-10	3prime_fragment	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGCAAACACTGGTCTG	NA	False	NA	-2	True	AGTAAA	-4	NA	4157060	4160596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_4157349_4157549
ENSMUSG00000020657.17_12	chr12	+	4723	7	NNC	ENSMUSG00000020657.17	novel	4698	7	NA	NA	1	-3	intron_retention	FALSE	canonical	0	0	junction_4	13.4866188827626	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACTGGTCTGCTGGCTG	NA	False	NA	5	True	AGTAAA	-11	NA	4132629	4160603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_4132874_4135953_4136037_4139133_4139204_4146212_4146378_4147148_4147347_4153053_4153215_4156801
ENSMUSG00000020657.17_2	chr12	+	4581	8	ISM	ENSMUSG00000020657.17	ENSMUST00000219923.2	2934	9	-47	-1399	-1	-3	intron_retention	FALSE	canonical	2	4	junction_7	11.2431384971149	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACTGGTCTGCTGGCTG	NA	False	NA	5	True	AGTAAA	-11	NA	4132581	4160603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_4132874_4135953_4136037_4139133_4139204_4146212_4146378_4147223_4147347_4153053_4153215_4156801_4157044_4157158
ENSMUSG00000020657.17_3	chr12	+	4652	7	FSM	ENSMUSG00000020657.17	ENSMUST00000020986.15	4698	7	43	3	-3	-3	multi-exon	FALSE	canonical	3	25	junction_5	5.84284938098603	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACTGGTCTGCTGGCTG	NA	False	NA	5	True	AGTAAA	-11	NA	4132625	4160603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4132874_4135953_4136037_4139133_4139204_4146212_4146378_4147223_4147347_4153053_4153215_4156801
ENSMUSG00000020657.17_9	chr12	+	3841	2	ISM	ENSMUSG00000020657.17	ENSMUST00000020986.15	4698	7	20591	5	14592	-5	3prime_fragment	FALSE	canonical	3	43	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACACTGGTCTGCTGGC	NA	False	NA	3	True	AGTAAA	-9	NA	4153173	4160601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_4153215_4156801
ENSMUSG00000020658.11_0	chr12	-	6530	23	FSM	ENSMUSG00000020658.11	ENSMUST00000111178.2	6547	23	11	6	11	-5	multi-exon	FALSE	canonical	1	2	junction_15	2.26224857056896	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATATGGCTGTCTATTTG	NA	False	NA	-5	True	AATAAA	-14	NA	4088904	4012559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_4016548_4017102_4017153_4018526_4018634_4019564_4019614_4020975_4021068_4021765_4021894_4023607_4023676_4025335_4025468_4026714_4026877_4027118_4027195_4027912_4028086_4030141_4030194_4030450_4030563_4031653_4031816_4031969_4032106_4032854_4032934_4033383_4033519_4034533_4034684_4035429_4035552_4042905_4043057_4049589_4049718_4050879_4050957_4088703
ENSMUSG00000020658.11_3	chr12	-	6070	13	ISM	ENSMUSG00000020658.11	ENSMUST00000111178.2	6547	23	57475	3	408	-2	3prime_fragment	FALSE	canonical	1	4	junction_4	1.6583123951777	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGCTGTCTATTTGAAT	7491	False	NA	-2	True	AATAAA	-17	NA	4031440	4012556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_4016548_4017102_4017153_4018526_4018634_4019564_4019614_4020975_4021068_4021765_4021894_4023607_4023676_4025335_4025468_4026714_4026877_4027118_4027195_4027912_4028086_4030141_4030194_4030450
ENSMUSG00000020658.11_7	chr12	-	4703	9	ISM	ENSMUSG00000020658.11	ENSMUST00000111178.2	6547	23	62112	6	-1339	-5	3prime_fragment	FALSE	canonical	1	4	junction_4	1.57619002661481	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATATGGCTGTCTATTTG	NA	False	NA	-5	True	AATAAA	-14	NA	4026803	4012559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_4016548_4017102_4017153_4018526_4018634_4019564_4019614_4020975_4021068_4021765_4021894_4023607_4023676_4025335_4025468_4026714
ENSMUSG00000020658.11_8	chr12	-	5438	15	ISM	ENSMUSG00000020658.11	ENSMUST00000111178.2	6547	23	56859	6	-208	-5	3prime_fragment	FALSE	canonical	1	3	junction_13	1.96396101212393	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATATGGCTGTCTATTTG	6875	False	NA	-5	True	AATAAA	-14	NA	4032056	4012559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_4016548_4017102_4017153_4018526_4018634_4019564_4019614_4020975_4021068_4021765_4021894_4023607_4023676_4025335_4025468_4026714_4026877_4027118_4027195_4027912_4028086_4030141_4030194_4030450_4030563_4031653_4031816_4031969
ENSMUSG00000020659.17_0	chr12	-	3820	6	FSM	ENSMUSG00000020659.17	ENSMUST00000064240.14	3937	6	2	115	2	-8	multi-exon	FALSE	canonical	3	23	junction_4	65.6310901935965	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTATTTTGCCTAGAT	NA	False	NA	NA	False	AATAAA	-11	NA	31549552	31534942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542179_31544589_31544749_31549521
ENSMUSG00000020659.17_1	chr12	-	3828	6	FSM	ENSMUSG00000020659.17	ENSMUST00000101499.10	3900	6	64	8	3	-8	multi-exon	FALSE	canonical	3	107	junction_4	37.6542162313864	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTATTTTGCCTAGAT	NA	False	NA	NA	False	AATAAA	-11	NA	31549551	31534942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542179_31544580_31544749_31549521
ENSMUSG00000020659.17_2	chr12	-	3824	6	FSM	ENSMUSG00000020659.17	ENSMUST00000185739.8	3945	6	6	115	4	-8	multi-exon	FALSE	canonical	3	17	junction_4	67.8250691116493	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTATTTTGCCTAGAT	NA	False	NA	NA	False	AATAAA	-11	NA	31549550	31534942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542176_31544580_31544749_31549521
ENSMUSG00000020659.17_3	chr12	-	3797	5	ISM	ENSMUSG00000020659.17	ENSMUST00000101499.10	3900	6	4866	10	4805	-10	3prime_fragment	FALSE	canonical	3	107	junction_4	38.758063677124	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATACTATTTTGCCTAG	NA	False	NA	NA	False	AATAAA	-9	NA	31544749	31534944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542179_31544580
ENSMUSG00000020659.17_4	chr12	-	3824	6	NIC	ENSMUSG00000020659.17	novel	1399	7	NA	NA	2	-1	intron_retention	FALSE	canonical	3	17	junction_4	67.8250691116493	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGCCTAGATGAGTCTT	NA	False	NA	NA	False	AATAAA	-18	NA	31549552	31534935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542176_31544589_31544749_31549521
ENSMUSG00000020659.17_5	chr12	-	2146	1	ISM	ENSMUSG00000020659.17	ENSMUST00000064240.14	3937	6	12466	115	12466	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTATTTTGCCTAGAT	NA	False	NA	NA	False	AATAAA	-11	NA	31537088	31534942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_31534900_31537100
ENSMUSG00000020660.7_0	chr12	+	552	1	ISM	ENSMUSG00000020660.7	ENSMUST00000218089.2	977	3	5073	43	5054	2	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCGGCTCTGATCTTCA	NA	False	NA	14	True	AATAAA	-15	NA	4010023	4010575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_4010000_4010600
ENSMUSG00000020661.16_0	chr12	+	4177	23	NIC	ENSMUSG00000020661.16	novel	2613	19	NA	NA	37	440	intron_retention	FALSE	canonical	2	4	junction_1	39.0183258490945	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAATGTACTGGTGCTTT	160	False	NA	-1	True	AATAAA	-8	NA	3856563	3958987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_3856603_3885026_3885261_3899634_3899740_3915984_3916253_3922834_3922879_3923281_3923429_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
ENSMUSG00000020661.16_1	chr12	+	4240	23	FSM	ENSMUSG00000020661.16	ENSMUST00000020991.15	9685	23	-11	5456	-11	440	multi-exon	FALSE	canonical	2	37	junction_5	34.649842283161	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAATGTACTGGTGCTTT	615	False	NA	-1	True	AATAAA	-8	NA	3857018	3958987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_3857121_3885026_3885261_3899634_3899740_3915984_3916253_3922834_3922879_3923281_3923429_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
ENSMUSG00000020661.16_21	chr12	+	3369	18	FSM	ENSMUSG00000020661.16	ENSMUST00000172689.8	2328	18	90	-1131	74	426	multi-exon	FALSE	canonical	3	65	junction_1	19.4274446476198	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAACATACAAAA	NA	False	NA	-15	True	NA	NA	NA	3941817	3958973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_3941861_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
ENSMUSG00000020661.16_37	chr12	+	1794	1	ISM	ENSMUSG00000020661.16	ENSMUST00000020991.15	9685	23	101484	4136	1698	1760	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATTAAAATGGG	3563	False	NA	NA	False	AATAAA	-6	NA	3958513	3960307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_3958500_3960300
ENSMUSG00000020661.16_38	chr12	+	2613	1	ISM	ENSMUSG00000020661.16	ENSMUST00000020991.15	9685	23	103835	966	4049	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAACGGAAAAAA	836	False	NA	140	True	AATAAA	-17	NA	3960864	3963477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_3960900_3963500
ENSMUSG00000020664.11_0	chr12	-	2210	14	FSM	ENSMUSG00000020664.11	ENSMUST00000110857.5	2544	14	40	294	1	-294	multi-exon	FALSE	canonical	3	710	junction_4	70.0417457938204	905	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATTAATTTACTGGTTA	NA	False	NA	-19	True	AATAAA	-9	NA	31401412	31381569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
ENSMUSG00000020668.11_0	chr12	+	4354	8	FSM	ENSMUSG00000020668.11	ENSMUST00000020999.7	6791	8	-1	2438	-1	-8	multi-exon	FALSE	canonical	3	31	junction_2	14.4066311262614	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTTAATTTTCATTGA	NA	False	NA	-4	True	AGTAAA	-11	NA	3415188	3454056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_3417532_3437551_3437654_3438134_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
ENSMUSG00000020668.11_10	chr12	+	1915	6	ISM	ENSMUSG00000020668.11	ENSMUST00000219895.2	2962	8	748	877	748	-8	3prime_fragment	FALSE	canonical	3	43	junction_1	11.2071405808975	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTTAATTTTCATTGA	NA	False	NA	-4	True	AGTAAA	-11	NA	3438128	3454056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
ENSMUSG00000020668.11_3	chr12	+	4114	9	FSM	ENSMUSG00000020668.11	ENSMUST00000220210.2	4144	9	30	0	-28	0	multi-exon	FALSE	canonical	3	5	junction_1	19.8679232684244	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCATTGACCTTTATT	NA	False	NA	4	True	AGTAAA	-19	NA	3415161	3454064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_3415497_3415771_3417532_3437551_3437654_3438134_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
ENSMUSG00000020669.16_0	chr12	+	1707	10	FSM	ENSMUSG00000020669.16	ENSMUST00000020997.15	1750	10	33	10	9	1	multi-exon	FALSE	canonical	3	40	junction_1	6.36153564813317	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGCTAAGTACTTTGTG	8072	False	NA	6	True	AATAAA	-14	NA	30961699	31010151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_30962227_30972233_30972345_30974762_30974877_30976808_30976874_30989572_30989686_30990289_30990419_30991965_30992129_30992788_30992868_31008846_31008904_31009802
ENSMUSG00000020671.10_0	chr12	-	3435	6	FSM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	34	44	34	-44	multi-exon	FALSE	canonical	3	1286	junction_2	62.4422933595492	2023	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTCTACTTCTGTTCA	NA	False	NA	-46	True	AATAAA	-14	NA	3359935	3297471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
ENSMUSG00000020673.15_0	chr12	-	2895	10	ISM	ENSMUSG00000020673.15	ENSMUST00000021005.15	3299	17	29269	-682	-8356	682	3prime_fragment	FALSE	canonical	0	0	junction_8	1.64053589558149	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAACAGAAATCCTGA	NA	False	NA	NA	False	NA	NA	NA	30153354	30103975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_30105163_30124092_30124217_30125775_30125876_30128057_30128190_30134606_30134778_30142543_30142753_30144777_30145016_30148167_30148339_30150317_30150577_30153050
ENSMUSG00000020674.18_0	chr12	+	6575	24	NNC	ENSMUSG00000020674.18	novel	6614	23	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	6.91345363836555	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGAGAATCTGTCCTTT	5866	False	NA	NA	False	AATAAA	-15	NA	29988013	30067650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_29988324_30023991_30024064_30025489_30025562_30029238_30029311_30032292_30032365_30032696_30032769_30034427_30034598_30034865_30034984_30037062_30037233_30040734_30041008_30043372_30043490_30044422_30044582_30045270_30045384_30046431_30046589_30049163_30049273_30049890_30050049_30051919_30053424_30055714_30055850_30056524_30056734_30061832_30061954_30062214_30062345_30064464_30064579_30065449_30066281_30066333
ENSMUSG00000020674.18_1	chr12	+	6551	22	NIC	ENSMUSG00000020674.18	novel	6614	23	NA	NA	-24	-8	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	5.96246764420263	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCGTTAAGTGGAGAATC	5863	False	NA	NA	False	AATAAA	-7	NA	29988010	30067642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_29988324_30023991_30024064_30025489_30025562_30032292_30032365_30032696_30032769_30034427_30034598_30034865_30034984_30037062_30037233_30040734_30041008_30043372_30043490_30044422_30044582_30045270_30045384_30046431_30046589_30049163_30049273_30049890_30050049_30051919_30053424_30055714_30055850_30056524_30056734_30061832_30061954_30062214_30062345_30064464_30064579_30065449
ENSMUSG00000020674.18_12	chr12	+	4049	7	ISM	ENSMUSG00000020674.18	ENSMUST00000218620.2	4578	8	2322	6	2322	0	3prime_fragment	FALSE	canonical	3	18	junction_1	6.71854812358213	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGAGAATCTGTCCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	30052284	30067650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_30053424_30055714_30055850_30056524_30056734_30061832_30061954_30062214_30062345_30064464_30064579_30065449
ENSMUSG00000020674.18_2	chr12	+	6610	23	FSM	ENSMUSG00000020674.18	ENSMUST00000122328.8	6614	23	-7	11	-7	-4	multi-exon	FALSE	canonical	2	15	junction_3	5.1578392554561	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTAAGTGGAGAATCTGTC	5880	False	NA	NA	False	AATAAA	-11	NA	29988027	30067646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_29988324_30023991_30024064_30025489_30025562_30029238_30029311_30032292_30032365_30032696_30032769_30034427_30034598_30034865_30034984_30037062_30037233_30040734_30041008_30043372_30043490_30044422_30044582_30045270_30045384_30046431_30046589_30049163_30049273_30049890_30050049_30051919_30053424_30055714_30055850_30056524_30056734_30061832_30061954_30062214_30062345_30064464_30064579_30065449
ENSMUSG00000020674.18_3	chr12	+	6503	23	NNC	ENSMUSG00000020674.18	novel	6614	23	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	7.56131957524665	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGAGAATCTGTCCTTT	5866	False	NA	NA	False	AATAAA	-15	NA	29988013	30067650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_29988324_30023991_30024064_30025489_30025562_30032292_30032365_30032696_30032769_30034427_30034598_30034865_30034984_30037062_30037233_30040734_30041008_30043372_30043490_30044422_30044582_30045270_30045384_30046431_30046589_30049163_30049273_30049890_30050049_30051919_30053424_30055714_30055850_30056524_30056734_30061832_30061954_30062214_30062345_30064464_30064579_30065449_30066281_30066333
ENSMUSG00000020674.18_9	chr12	+	1050	1	ISM	ENSMUSG00000020674.18	ENSMUST00000220271.2	6377	23	78994	0	16638	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGAGAATCTGTCCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	30066600	30067650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_30066600_30067600
ENSMUSG00000020677.8_0	chr11	+	2194	15	FSM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	101	899	101	-899	multi-exon	FALSE	canonical	3	267	junction_7	30.0713437392763	479	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACACTTGTGTGTATGGAG	NA	False	NA	22	True	AATAAA	-23	NA	83832988	83853015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272_83850360_83852575
ENSMUSG00000020680.16_0	chr11	+	2036	17	NNC	ENSMUSG00000020680.16	novel	2068	16	NA	NA	6	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	27.3723600325219	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGAGTGCATTATTTGT	8666	False	NA	40	True	AATAAA	-20	NA	83363923	83397568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395558_83395582_83395931_83397243
ENSMUSG00000020680.16_1	chr11	+	2063	16	FSM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	3	2	3	-2	multi-exon	FALSE	canonical	3	28	junction_5	25.2651714597168	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGAGTGCATTATTTG	8663	False	NA	39	True	AATAAA	-19	NA	83363920	83397567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
ENSMUSG00000020680.16_16	chr11	+	2016	8	NIC	ENSMUSG00000020680.16	novel	1260	11	NA	NA	8176	-1	intron_retention	FALSE	canonical	3	42	junction_1	31.3036478281196	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGAGTGCATTATTTGT	NA	False	NA	40	True	AATAAA	-20	NA	83388028	83397568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
ENSMUSG00000020680.16_17	chr11	+	1164	6	ISM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	28040	2	12105	-2	3prime_fragment	FALSE	canonical	3	45	junction_2	34.7194470002044	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGAGTGCATTATTTG	NA	False	NA	39	True	AATAAA	-19	NA	83391957	83397567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
ENSMUSG00000020680.16_19	chr11	+	1051	5	ISM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	29668	2	13733	-2	3prime_fragment	FALSE	canonical	3	45	junction_1	37.1045819273038	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGAGTGCATTATTTG	NA	False	NA	39	True	AATAAA	-19	NA	83393585	83397567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
ENSMUSG00000020680.16_2	chr11	+	1676	5	ISM	ENSMUSG00000020680.16	ENSMUST00000134185.8	881	7	2	2857	2	-2689	5prime_fragment	FALSE	canonical	3	38	junction_4	6.75925291729789	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	8656	False	NA	NA	False	NA	NA	NA	83363913	83377182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802
ENSMUSG00000020680.16_23	chr11	+	530	2	ISM	ENSMUSG00000020680.16	ENSMUST00000133170.2	1260	11	15873	1	15873	-1	3prime_fragment	FALSE	canonical	3	139	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGAGTGCATTATTTGT	NA	False	NA	40	True	AATAAA	-20	NA	83395725	83397568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83395931_83397243
ENSMUSG00000020680.16_25	chr11	+	167	1	ISM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	33484	1	17549	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGAGTGCATTATTTGT	NA	False	NA	40	True	AATAAA	-20	NA	83397401	83397568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83397400_83397600
ENSMUSG00000020680.16_9	chr11	+	1408	10	ISM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	15906	1	-29	-1	3prime_fragment	FALSE	canonical	3	34	junction_1	30.0041149441247	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGAGTGCATTATTTGT	NA	False	NA	40	True	AATAAA	-20	NA	83379823	83397568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
ENSMUSG00000020681.15_0	chr11	+	4863	25	FSM	ENSMUSG00000020681.15	ENSMUST00000001963.14	4906	25	8	35	8	-35	multi-exon	FALSE	canonical	0	0	junction_3	2.26691175145591	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGCAACATTAAGAAATATAA	NA	False	NA	NA	False	AATAAA	-12	NA	105858778	105880755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_105859072_105859732_105859901_105860526_105860621_105861378_105861523_105862117_105862310_105862842_105862941_105863186_105863360_105863686_105863911_105864217_105864363_105864604_105864704_105864929_105865053_105865492_105865705_105866361_105866499_105867370_105867530_105867777_105867866_105869995_105870140_105870306_105870499_105872323_105872422_105872593_105872767_105875870_105876095_105876398_105876544_105876815_105876915_105878841_105878965_105879254_105879443_105879627
ENSMUSG00000020681.15_2	chr11	+	1222	4	ISM	ENSMUSG00000020681.15	ENSMUST00000001964.8	2418	14	10341	-6	8944	-1	intron_retention	FALSE	canonical	1	2	junction_1	1.69967317119759	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTGAGTCTGTGTCCCT	NA	False	NA	NA	False	ATTAAA	-12	NA	105876374	105880085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_105876544_105876815_105876915_105878841_105878965_105879254
ENSMUSG00000020681.15_5	chr11	+	4400	24	ISM	ENSMUSG00000020681.15	ENSMUST00000001963.14	4906	25	-14	705	-14	-1	intron_retention	FALSE	canonical	0	0	junction_3	2.23564524037956	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTGAGTCTGTGTCCCT	NA	False	NA	NA	False	ATTAAA	-12	NA	105858756	105880085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_105859072_105859732_105859901_105860526_105860621_105861378_105861523_105862117_105862310_105862842_105862941_105863186_105863360_105863686_105863911_105864217_105864363_105864604_105864704_105864929_105865053_105865492_105865705_105866361_105866499_105867370_105867530_105867777_105867866_105869995_105870140_105870306_105870499_105872323_105872422_105872593_105872767_105875870_105876095_105876398_105876544_105876815_105876915_105878841_105878965_105879254
ENSMUSG00000020684.15_0	chr11	+	3151	4	FSM	ENSMUSG00000020684.15	ENSMUST00000108140.10	3156	4	4	1	4	0	multi-exon	FALSE	canonical	3	7	junction_2	2.94392028877595	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCGGTGTCAGCTCTGTT	1440	False	NA	26	True	ATTAAA	-30	NA	83300517	83311864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83300708_83303303_83303661_83308677_83308803_83309385
ENSMUSG00000020687.14_0	chr11	-	5561	19	FSM	ENSMUSG00000020687.14	ENSMUST00000106962.9	3160	19	-207	-2194	21	2	multi-exon	FALSE	canonical	3	32	junction_11	53.6541278197565	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAATCAAGGTGTTAAAG	2087	False	NA	-30	True	AATAAA	-18	NA	104441425	104393568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411663_104412206_104412415_104413548_104413649_104416876_104417011_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
ENSMUSG00000020687.14_1	chr11	-	5552	19	NNC	ENSMUSG00000020687.14	novel	5425	19	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	canonical	3	108	junction_8	36.3123027820232	116	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAGTTTATAATCAAGG	2067	False	NA	-38	True	AATAAA	-10	NA	104441445	104393576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411660_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
ENSMUSG00000020687.14_2	chr11	-	5546	19	FSM	ENSMUSG00000020687.14	ENSMUST00000093923.9	5425	19	-127	6	10	-6	multi-exon	FALSE	canonical	3	109	junction_8	36.161503300992	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAGTTTATAATCAAGG	2076	False	NA	-38	True	AATAAA	-10	NA	104441436	104393576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411663_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
ENSMUSG00000020687.14_3	chr11	-	2175	1	ISM	ENSMUSG00000020687.14	ENSMUST00000093923.9	5425	19	45563	1	8356	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTATAATCAAGGTGTTA	7850	False	NA	-33	True	AATAAA	-15	NA	104395746	104393571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_104393600_104395700
ENSMUSG00000020687.14_4	chr11	-	5434	19	NIC	ENSMUSG00000020687.14	novel	5425	19	NA	NA	12	-1	combination_of_known_junctions	FALSE	canonical	3	52	junction_18	50.2831488843767	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTATAATCAAGGTGTTA	2078	False	NA	-33	True	AATAAA	-15	NA	104441434	104393571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411663_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441303
ENSMUSG00000020687.14_9	chr11	-	3515	6	ISM	ENSMUSG00000020687.14	ENSMUST00000093923.9	5425	19	35006	6	-2201	-6	3prime_fragment	FALSE	canonical	3	199	junction_2	11.9565881421081	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAGTTTATAATCAAGG	NA	False	NA	-38	True	AATAAA	-10	NA	104406303	104393576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197
ENSMUSG00000020689.5_1	chr11	+	5697	16	NNC	ENSMUSG00000020689.5	novel	5784	15	NA	NA	47	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	4.12579958580421	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAACTGGCCTGAGACT	NA	False	NA	NA	False	ATTAAA	-11	NA	104498872	104561295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_104498991_104514236_104514323_104522999_104523196_104524223_104524477_104527877_104528041_104528648_104528811_104531117_104531214_104531826_104531917_104533009_104533145_104534401_104534832_104549548_104549772_104550861_104550963_104553154_104553275_104556291_104556459_104557905_104559006_104559038
ENSMUSG00000020689.5_2	chr11	+	2600	15	FSM	ENSMUSG00000020689.5	ENSMUST00000021028.5	5784	15	56	3128	56	-2465	multi-exon	FALSE	canonical	2	6	junction_5	3.08716896928204	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTGTGATGTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	104498881	104558174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_104498991_104514236_104514323_104522999_104523196_104524223_104524477_104527877_104528041_104528648_104528811_104531117_104531214_104531826_104531917_104533009_104533145_104534401_104534832_104549548_104549772_104550861_104550963_104553154_104553275_104556291_104556459_104557905
ENSMUSG00000020689.5_7	chr11	+	2162	1	ISM	ENSMUSG00000020689.5	ENSMUST00000021028.5	5784	15	60308	7	30919	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAACTGGCCTGAGACT	8346	False	NA	NA	False	ATTAAA	-11	NA	104559133	104561295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_104559100_104561300
ENSMUSG00000020691.14_12	chr11	+	2720	8	NIC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	13	751	intron_retention	FALSE	canonical	3	226	junction_5	20.985903918233	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTTTTGGTGGTGTGGCT	NA	False	NA	3	True	AATAAA	-13	NA	105017317	105031971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
ENSMUSG00000020691.14_2	chr11	+	2550	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	66	-749	12	749	multi-exon	TRUE	canonical	3	226	junction_6	21.0698243941424	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATCTTTTTGGTGGTGTGG	NA	False	NA	1	True	AATAAA	-11	NA	105017316	105031969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
ENSMUSG00000020692.15_1	chr11	-	1735	13	FSM	ENSMUSG00000020692.15	ENSMUST00000103213.10	1783	13	44	4	-25	0	multi-exon	FALSE	canonical	3	193	junction_4	34.6180548590215	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8347	False	NA	-10	True	AATAAA	-18	NA	82799193	82791597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
ENSMUSG00000020692.15_16	chr11	-	3383	10	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-24	0	intron_retention	TRUE	canonical	3	35	junction_1	75.8967785064315	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8348	False	NA	-10	True	AATAAA	-18	NA	82799192	82791597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_82793960_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
ENSMUSG00000020692.15_20	chr11	-	1705	12	ISM	ENSMUSG00000020692.15	ENSMUST00000103213.10	1783	13	175	6	106	-2	3prime_fragment	FALSE	canonical	3	193	junction_4	34.670825137318	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTTGCAGCTTCTT	8478	False	NA	-12	True	AATAAA	-16	NA	82799062	82791599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917
ENSMUSG00000020692.15_8	chr11	-	2256	11	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-24	-1	intron_retention	FALSE	canonical	3	35	junction_2	72.0513705629532	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCATGTTGCAGCTTCTTG	8348	False	NA	-11	True	AATAAA	-17	NA	82799192	82791598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_82792695_82793820_82793960_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
ENSMUSG00000020694.18_10	chr11	+	3511	21	NIC	ENSMUSG00000020694.18	novel	3699	22	NA	NA	87	-4	combination_of_known_junctions	FALSE	canonical	3	34	junction_7	84.4375508882156	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTCCTCCTGGATTCT	NA	False	NA	21	True	AATAAA	-14	NA	105072439	105172998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105101370_105101467_105112011_105112180_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170052_105171910
ENSMUSG00000020694.18_23	chr11	+	3413	20	NIC	ENSMUSG00000020694.18	novel	3212	21	NA	NA	89	-4	combination_of_known_junctions	FALSE	canonical	3	34	junction_6	96.5630418567662	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTCCTCCTGGATTCT	NA	False	NA	21	True	AATAAA	-14	NA	105072441	105172998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105112011_105112180_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170052_105171910
ENSMUSG00000020694.18_4	chr11	+	3515	21	FSM	ENSMUSG00000020694.18	ENSMUST00000015107.13	3212	21	-307	4	83	-4	multi-exon	FALSE	canonical	3	73	junction_5	74.0480249567806	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTCCTCCTGGATTCT	NA	False	NA	21	True	AATAAA	-14	NA	105072435	105172998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105112011_105112180_105131186_105131283_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170052_105171910
ENSMUSG00000020694.18_6	chr11	+	3607	22	FSM	ENSMUSG00000020694.18	ENSMUST00000106941.9	3699	22	87	5	87	-4	multi-exon	FALSE	canonical	3	204	junction_5	59.3191529336175	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTCCTCCTGGATTCT	NA	False	NA	21	True	AATAAA	-14	NA	105072439	105172998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105101370_105101467_105112011_105112180_105131186_105131283_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170052_105171910
ENSMUSG00000020694.18_8	chr11	+	3432	20	NIC	ENSMUSG00000020694.18	novel	3699	22	NA	NA	73	-4	combination_of_known_splicesites	FALSE	canonical	3	13	junction_7	89.777533604829	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTCCTCCTGGATTCT	NA	False	NA	21	True	AATAAA	-14	NA	105072425	105172998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105101370_105101467_105112011_105112180_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170052_105171910
ENSMUSG00000020694.18_9	chr11	+	2944	20	FSM	ENSMUSG00000020694.18	ENSMUST00000092537.10	2743	20	-181	-20	85	20	multi-exon	FALSE	canonical	3	204	junction_5	62.1637993541137	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCGTGTGTGCTTGTGAA	NA	False	NA	13	True	AATAAA	-15	NA	105072437	105167305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105101370_105101467_105112011_105112180_105131186_105131283_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662
ENSMUSG00000020695.15_1	chr11	+	6295	30	FSM	ENSMUSG00000020695.15	ENSMUST00000100335.10	5795	30	-501	1	-498	-1	multi-exon	FALSE	canonical	0	0	junction_5	1.56507665074624	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGTCAGCGTTTGTGCCT	999	False	NA	NA	False	AATAAA	-18	NA	105182970	105241964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_105183728_105216327_105216730_105218797_105218972_105219102_105219268_105219488_105219603_105220050_105220195_105222709_105222899_105223061_105223217_105224449_105224558_105226962_105227079_105227450_105227600_105228453_105228672_105229617_105229761_105231043_105231147_105231363_105231503_105231623_105231660_105231919_105232081_105232176_105232245_105233918_105234020_105234281_105234425_105237035_105237151_105237255_105237420_105237545_105237655_105238060_105238300_105238424_105238594_105238685_105238833_105239132_105239253_105239423_105239604_105240393_105240421_105240524
ENSMUSG00000020696.19_12	chr11	-	3516	7	NIC	ENSMUSG00000020696.19	novel	3633	8	NA	NA	27	-6	combination_of_known_junctions	FALSE	canonical	3	25	junction_5	63.0204993104096	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGATGCCTGTCCCA	2770	False	NA	NA	False	AATAAA	-5	NA	82762009	82694653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_82697016_82699338_82699363_82700833_82701045_82703225_82703637_82709241_82709430_82736577_82736722_82761833
ENSMUSG00000020696.19_13	chr11	-	1782	1	ISM	ENSMUSG00000020696.19	ENSMUST00000074515.11	4973	7	23434	1379	23422	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGATGCCTGTCCCA	NA	False	NA	NA	False	AATAAA	-5	NA	82696435	82694653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_82694700_82696400
ENSMUSG00000020696.19_2	chr11	-	3363	6	NIC	ENSMUSG00000020696.19	novel	3489	7	NA	NA	36	-6	combination_of_known_junctions	FALSE	canonical	3	66	junction_3	39.9769933836951	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGATGCCTGTCCCA	2779	False	NA	NA	False	AATAAA	-5	NA	82762000	82694653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_82697016_82699338_82699363_82700833_82701045_82703225_82703637_82709241_82709430_82761833
ENSMUSG00000020696.19_5	chr11	-	3445	7	FSM	ENSMUSG00000020696.19	ENSMUST00000108173.10	3489	7	38	6	38	-6	multi-exon	FALSE	canonical	3	78	junction_4	36.5942466637706	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGATGCCTGTCCCA	2781	False	NA	NA	False	AATAAA	-5	NA	82761998	82694653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_82697016_82699338_82699363_82700833_82701045_82701853_82701938_82703225_82703637_82709241_82709430_82761833
ENSMUSG00000020696.19_9	chr11	-	3591	8	FSM	ENSMUSG00000020696.19	ENSMUST00000071152.14	3633	8	36	6	36	-6	multi-exon	FALSE	canonical	3	25	junction_6	57.61306541161	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGATGCCTGTCCCA	2779	False	NA	NA	False	AATAAA	-5	NA	82762000	82694653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_82697016_82699338_82699363_82700833_82701045_82701853_82701938_82703225_82703637_82709241_82709430_82736577_82736722_82761833
ENSMUSG00000020697.17_0	chr11	+	5875	20	FSM	ENSMUSG00000020697.17	ENSMUST00000092849.12	4560	20	90	-1405	0	-7	multi-exon	FALSE	canonical	3	118	junction_3	18.4785568622637	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTTTTGGTTTTTTTCC	NA	False	NA	4	True	AATAAA	-9	NA	82672023	82695093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678453_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
ENSMUSG00000020697.17_1	chr11	+	5891	20	FSM	ENSMUSG00000020697.17	ENSMUST00000173722.8	5797	20	-23	-71	-5	-5	multi-exon	FALSE	canonical	0	0	junction_1	44.7105805272123	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTTGGTTTTTTTCCCC	NA	False	NA	6	True	AATAAA	-11	NA	82672005	82695095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_82672099_82674171_82674726_82676140_82676285_82678453_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
ENSMUSG00000020697.17_2	chr11	+	5883	20	FSM	ENSMUSG00000020697.17	ENSMUST00000173727.8	3636	20	-6	-2241	2	-7	multi-exon	FALSE	canonical	3	52	junction_3	31.7035261983143	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTTTTGGTTTTTTTCC	NA	False	NA	4	True	AATAAA	-9	NA	82672012	82695093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678456_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
ENSMUSG00000020697.17_43	chr11	+	2431	1	ISM	ENSMUSG00000020697.17	ENSMUST00000021039.12	5957	20	20708	1	3494	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTTTTTTCCCCCCCA	NA	False	NA	10	True	AATAAA	-15	NA	82692668	82695099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_82692700_82695100
ENSMUSG00000020697.17_8	chr11	+	5888	20	FSM	ENSMUSG00000020697.17	ENSMUST00000173347.8	3631	20	-15	-2242	-7	-7	multi-exon	FALSE	canonical	0	0	junction_1	50.9559583885031	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTTTTGGTTTTTTTCC	NA	False	NA	4	True	AATAAA	-9	NA	82672003	82695093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_82672099_82674171_82674726_82676140_82676285_82678456_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
ENSMUSG00000020700.12_1	chr11	+	3772	16	FSM	ENSMUSG00000020700.12	ENSMUST00000002044.10	3450	16	-25	-297	-25	297	multi-exon	FALSE	canonical	3	32	junction_6	10.0066644459247	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAGCTGGTTTTGCAGA	167	False	NA	NA	False	NA	NA	NA	105975413	106046569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_105975760_105987816_105987939_106001569_106001611_106005009_106005110_106008315_106008430_106014611_106014733_106033250_106033385_106036511_106036586_106039390_106039459_106039639_106039733_106040307_106040500_106041095_106041245_106041834_106041967_106042443_106042574_106043042_106043221_106044791
ENSMUSG00000020700.12_11	chr11	+	2953	13	ISM	ENSMUSG00000020700.12	ENSMUST00000002044.10	3450	16	29570	14	29570	-14	3prime_fragment	FALSE	canonical	3	32	junction_3	10.20994885176	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGCC	NA	False	NA	NA	False	NA	NA	NA	106005008	106046258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_106005110_106008315_106008430_106014611_106014733_106033250_106033385_106036511_106036586_106039390_106039459_106039639_106039733_106040307_106040500_106041095_106041245_106041834_106041967_106042443_106042574_106043042_106043221_106044791
ENSMUSG00000020705.7_0	chr11	+	3868	18	NNC	ENSMUSG00000020705.7	novel	445	2	NA	NA	-470	-9	at_least_one_novel_splicesite	FALSE	canonical	2	54	junction_1	112.518818110864	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAGTTATCTCTTTTAT	NA	False	NA	19	True	ATTAAA	-6	NA	106107281	106139956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_106107379_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
ENSMUSG00000020705.7_8	chr11	+	3959	18	FSM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	43	9	43	-9	multi-exon	FALSE	canonical	2	294	junction_3	62.7187383355908	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAGTTATCTCTTTTAT	NA	False	NA	19	True	ATTAAA	-6	NA	106107794	106139956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
ENSMUSG00000020706.14_1	chr11	-	2858	21	FSM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	270	16	-5	-16	multi-exon	FALSE	canonical	3	632	junction_7	76.5847732907789	1421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGATAAAAGAGATAA	NA	False	NA	-30	True	NA	NA	NA	106146635	106139983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
ENSMUSG00000020706.14_2	chr11	-	2808	20	ISM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	401	18	118	-18	3prime_fragment	FALSE	canonical	3	632	junction_7	77.1236730312312	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAGATAAAAGAGAT	NA	False	NA	-32	True	NA	NA	NA	106146504	106139985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410
ENSMUSG00000020707.7_0	chr11	+	1957	5	FSM	ENSMUSG00000020707.7	ENSMUST00000017839.3	1984	5	23	4	23	-4	multi-exon	FALSE	canonical	3	52	junction_2	3.96074487943871	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTGTGTTGAGTTCATT	NA	False	NA	30	True	NA	NA	NA	80074699	80090579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80075082_80080049_80080194_80084711_80084875_80087698_80087774_80089386
ENSMUSG00000020707.7_2	chr11	+	1815	4	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	21	-4	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	17.6131264181639	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTGTGTTGAGTTCATT	NA	False	NA	30	True	NA	NA	NA	80074697	80090579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_80075082_80084711_80084875_80087698_80087774_80089386
ENSMUSG00000020707.7_4	chr11	+	2682	3	ISM	ENSMUSG00000020707.7	ENSMUST00000017839.3	1984	5	20	3719	20	-3719	5prime_fragment	FALSE	canonical	3	52	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAACACTTTCTGTCTAT	NA	False	NA	NA	False	NA	NA	NA	80074696	80086864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_80075082_80080049_80080194_80084711
ENSMUSG00000020707.7_6	chr11	+	1794	4	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	23	-4	combination_of_known_splicesites	FALSE	canonical	3	5	junction_2	26.4491125665032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTGTGTTGAGTTCATT	NA	False	NA	30	True	NA	NA	NA	80074699	80090579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_80075082_80080049_80080194_80087698_80087774_80089386
ENSMUSG00000020707.7_7	chr11	+	1650	3	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	23	-4	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	29.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTGTGTTGAGTTCATT	NA	False	NA	30	True	NA	NA	NA	80074699	80090579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_80075082_80087698_80087774_80089386
ENSMUSG00000020708.13_1	chr11	+	1309	11	FSM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	4	3	4	-3	multi-exon	FALSE	canonical	3	2261	junction_6	178.766439803449	1628	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTACAACTCCAGTTT	4540	False	NA	12	True	AATAAA	-16	NA	106146983	106153943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
ENSMUSG00000020709.16_1	chr11	+	4202	10	ISM	ENSMUSG00000020709.16	ENSMUST00000021050.14	1785	11	-11	-1285	-11	1285	intron_retention	FALSE	canonical	3	12	junction_2	3.01027048536535	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	80044919	80071069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_80045136_80045815_80045947_80047770_80047863_80050988_80051069_80052973_80053087_80056498_80056646_80061503_80061588_80064913_80064977_80066881_80066960_80067871
ENSMUSG00000020709.16_3	chr11	+	4420	11	NNC	ENSMUSG00000020709.16	novel	1785	11	NA	NA	-31	1657	intron_retention	FALSE	non_canonical	0	0	junction_10	5.90338885725818	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAACATCCAGGCTTCAC	NA	False	NA	NA	False	ATTAAA	-7	NA	80044899	80071441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_80045136_80045815_80045947_80047770_80047863_80050988_80051069_80052973_80053087_80056498_80056646_80061503_80061588_80064913_80064977_80066881_80066960_80067871_80071063_80071236
ENSMUSG00000020709.16_5	chr11	+	3099	11	FSM	ENSMUSG00000020709.16	ENSMUST00000021050.14	1785	11	-35	-1279	-35	1279	multi-exon	FALSE	canonical	1	2	junction_10	5.38609320379809	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCCAATTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	80044895	80071063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80045136_80045815_80045947_80047770_80047863_80050988_80051069_80052973_80053087_80056498_80056646_80061503_80061588_80064913_80064977_80066881_80066960_80067871_80068101_80069221
ENSMUSG00000020712.12_1	chr11	+	2903	8	NIC	ENSMUSG00000020712.12	novel	3059	8	NA	NA	-7	2	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	2.1189138534559	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGAGTTTCTTTTCCCG	7184	False	NA	NA	False	AATAAA	-13	NA	106167490	106178961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_106167620_106172728_106172805_106173612_106173880_106174868_106175190_106175381_106175661_106176197_106176468_106177201_106177445_106177643
ENSMUSG00000020715.10_1	chr11	-	6996	22	FSM	ENSMUSG00000020715.10	ENSMUST00000001059.9	6946	22	-53	3	3	-3	multi-exon	FALSE	canonical	2	5	junction_11	5.67646212197547	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGTTGCCTTGTTTCTT	9436	False	NA	-4	True	AATAAA	-15	NA	106378675	106285478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106289581_106290597_106290666_106291020_106291145_106294273_106294402_106296547_106296696_106297866_106298067_106298321_106298422_106298885_106299076_106299715_106299807_106300720_106300989_106302448_106302641_106305176_106305296_106309649_106309816_106310844_106310924_106312531_106312794_106314212_106314315_106317638_106317762_106319839_106319913_106325740_106325814_106327915_106327950_106349733_106349855_106378442
ENSMUSG00000020715.10_11	chr11	-	6022	15	ISM	ENSMUSG00000020715.10	ENSMUST00000001059.9	6946	22	66047	0	66047	0	3prime_fragment	FALSE	canonical	2	5	junction_11	5.79408565447807	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCCTTGTTTCTTAAA	1960	False	NA	-1	True	AATAAA	-18	NA	106312575	106285475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106289581_106290597_106290666_106291020_106291145_106294273_106294402_106296547_106296696_106297866_106298067_106298321_106298422_106298885_106299076_106299715_106299807_106300720_106300989_106302448_106302641_106305176_106305296_106309649_106309816_106310844_106310924_106312531
ENSMUSG00000020715.10_2	chr11	-	3527	1	ISM	ENSMUSG00000020715.10	ENSMUST00000001059.9	6946	22	89620	0	89620	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCCTTGTTTCTTAAA	NA	False	NA	-1	True	AATAAA	-18	NA	106289002	106285475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106285500_106289000
ENSMUSG00000020715.10_7	chr11	-	1919	11	FSM	ENSMUSG00000020715.10	ENSMUST00000106801.8	1957	11	8	30	8	-30	multi-exon	FALSE	canonical	3	10	junction_8	5.58927544499285	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACTAGAGAATACAATTAA	9457	False	NA	NA	False	ATTAAA	-22	NA	106378654	106304621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106305296_106309649_106309816_106310844_106310924_106312531_106312794_106314212_106314315_106317638_106317762_106319839_106319913_106325740_106325814_106327915_106327950_106349733_106349855_106378442
ENSMUSG00000020716.17_17	chr11	+	3686	16	ISM	ENSMUSG00000020716.17	ENSMUST00000137997.2	4133	18	1359	63	1359	-63	3prime_fragment	TRUE	canonical	2	4	junction_10	4.67332857821917	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATAACAATTTAATTTT	NA	False	NA	NA	False	AATAAA	-17	NA	79438492	79470811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_79438709_79439299_79439362_79439499_79439615_79440233_79440336_79441819_79441961_79444696_79444824_79446306_79446439_79447524_79447661_79450230_79450389_79455649_79455773_79456243_79456378_79456745_79456847_79459475_79459619_79459949_79459997_79461056_79461274_79469079
ENSMUSG00000020716.17_19	chr11	+	3292	13	ISM	ENSMUSG00000020716.17	ENSMUST00000137997.2	4133	18	3101	63	3101	-63	3prime_fragment	FALSE	canonical	2	4	junction_7	4.94061961926055	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATAACAATTTAATTTT	NA	False	NA	NA	False	AATAAA	-17	NA	79440234	79470811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_79440336_79441819_79441961_79444696_79444824_79446306_79446439_79447524_79447661_79450230_79450389_79455649_79455773_79456243_79456378_79456745_79456847_79459475_79459619_79459949_79459997_79461056_79461274_79469079
ENSMUSG00000020716.17_2	chr11	+	757	2	FSM	ENSMUSG00000020716.17	ENSMUST00000145839.2	721	2	-38	2	-38	-2	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCCTGGTCTGCAATCTT	NA	False	NA	NA	False	AATAAA	-18	NA	79230480	79236010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_79230886_79235658
ENSMUSG00000020716.17_20	chr11	+	3161	12	ISM	ENSMUSG00000020716.17	ENSMUST00000137997.2	4133	18	4716	63	4716	-63	3prime_fragment	FALSE	canonical	2	4	junction_6	5.01073228346206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATAACAATTTAATTTT	NA	False	NA	NA	False	AATAAA	-17	NA	79441849	79470811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_79441961_79444696_79444824_79446306_79446439_79447524_79447661_79450230_79450389_79455649_79455773_79456243_79456378_79456745_79456847_79459475_79459619_79459949_79459997_79461056_79461274_79469079
ENSMUSG00000020716.17_24	chr11	+	3220	2	ISM	ENSMUSG00000020716.17	ENSMUST00000137997.2	4133	18	23948	-1233	23948	-331	3prime_fragment	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTCTTGTGTTCGTATT	NA	False	NA	NA	False	NA	NA	NA	79461081	79472107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_79461274_79469079
ENSMUSG00000020716.17_25	chr11	+	2305	1	ISM	ENSMUSG00000020716.17	ENSMUST00000071325.9	11917	58	239471	12	32988	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTCTAAACTGTGAGG	NA	False	NA	NA	False	AGTAAA	-12	NA	79470121	79472426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_79470100_79472400
ENSMUSG00000020716.17_28	chr11	+	8692	55	NIC	ENSMUSG00000020716.17	novel	11917	58	NA	NA	-19	-1079	combination_of_known_junctions	TRUE	canonical	1	2	junction_23	4.29310226099025	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTCTGTCAGCTATAC	NA	False	NA	NA	False	ATTAAA	-10	NA	79230499	79459862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_79230886_79275000_79275145_79277480_79277565_79281034_79281226_79286680_79286788_79299239_79299308_79299527_79299604_79300219_79300378_79302321_79302496_79302880_79303004_79303509_79303585_79309377_79309510_79316338_79316474_79319403_79319518_79325670_79325751_79327515_79327640_79329512_79329675_79331673_79331924_79332454_79332529_79332716_79332801_79334594_79335036_79335425_79335566_79335849_79335973_79336541_79336626_79337631_79337749_79338309_79338492_79338950_79339163_79344628_79344791_79344924_79345029_79349596_79349733_79354058_79354122_79359542_79359702_79360598_79360697_79362260_79362408_79364154_79364302_79366598_79366710_79426428_79426862_79427618_79427960_79431155_79431359_79436179_79436374_79437097_79437239_79437796_79438077_79438493_79438709_79439299_79439362_79439499_79439615_79440233_79440336_79441819_79441961_79444696_79444824_79446306_79446439_79447524_79447661_79450230_79450389_79455649_79455773_79456243_79456378_79456745_79456847_79459475
ENSMUSG00000020716.17_5	chr11	+	4553	12	ISM	ENSMUSG00000020716.17	ENSMUST00000131800.2	3851	14	-210	9267	-16	-9267	5prime_fragment	FALSE	canonical	2	3	junction_2	2.93736262207337	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCGCCTCAGTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	79230502	79312347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_79230886_79275000_79275145_79277480_79277565_79281034_79281226_79286680_79286788_79299239_79299308_79299527_79299604_79300219_79300378_79302321_79302496_79302880_79303004_79303509_79303585_79309377
ENSMUSG00000020716.17_6	chr11	+	4061	14	FSM	ENSMUSG00000020716.17	ENSMUST00000131800.2	3851	14	-213	3	-19	-3	multi-exon	FALSE	canonical	2	3	junction_2	2.72181630968525	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATAATTGCTGTAATTGT	NA	False	NA	NA	False	AATAAA	-28	NA	79230499	79321611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_79230886_79275000_79275145_79277480_79277565_79281034_79281226_79286680_79286788_79299239_79299308_79299527_79299604_79300219_79300378_79302321_79302496_79302880_79303004_79303509_79303585_79309377_79309510_79316338_79316474_79319403
ENSMUSG00000020717.20_12	chr11	-	3246	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9026	0	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_15	360.787927859136	192	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	398	False	NA	-10	True	AATAAA	-18	NA	106615246	106545043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
ENSMUSG00000020717.20_14	chr11	-	3292	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9032	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_15	368.337888357959	181	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	392	False	NA	-10	True	AATAAA	-18	NA	106615252	106545043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
ENSMUSG00000020717.20_2	chr11	-	3278	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9023	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_16	418.075950037789	181	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	401	False	NA	-10	True	AATAAA	-18	NA	106615243	106545043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ENSMUSG00000020717.20_3	chr11	-	3195	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9032	0	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_14	370.771513611985	199	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	392	False	NA	-10	True	AATAAA	-18	NA	106615252	106545043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
ENSMUSG00000020717.20_40	chr11	-	3235	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9032	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_14	378.799506766483	213	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	392	False	NA	-10	True	AATAAA	-18	NA	106615252	106545043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
ENSMUSG00000020717.20_7	chr11	-	3254	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9022	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_15	360.626097533473	248	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	402	False	NA	-10	True	AATAAA	-18	NA	106615242	106545043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ENSMUSG00000020718.13_0	chr11	-	1351	8	NIC	ENSMUSG00000020718.13	novel	1506	8	NA	NA	12	-5	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	16.8001457719623	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATACAGTTTTGGACTT	4344	False	NA	NA	False	AATAAA	-28	NA	106670316	106659083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669909
ENSMUSG00000020718.13_2	chr11	-	1496	8	FSM	ENSMUSG00000020718.13	ENSMUST00000021060.6	1506	8	3	7	3	-7	multi-exon	FALSE	canonical	3	24	junction_7	14.9652659072089	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTAATACAGTTTTGGAC	4322	False	NA	NA	False	AATAAA	-26	NA	106670338	106659085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669784
ENSMUSG00000020718.13_4	chr11	-	171	1	ISM	ENSMUSG00000020718.13	ENSMUST00000021060.6	1506	8	11090	2	5425	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACAGTTTTGGACTTTTG	6196	False	NA	NA	False	AATAAA	-31	NA	106659251	106659080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106659100_106659300
ENSMUSG00000020719.15_1	chr11	-	2328	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	38	1193	0	0	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	4637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9654	False	NA	-9	True	AATAAA	-45	NA	106679320	106672373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ENSMUSG00000020719.15_3	chr11	-	3593	12	FSM	ENSMUSG00000020719.15	ENSMUST00000133426.8	3593	12	0	0	0	0	multi-exon	FALSE	canonical	3	3830	junction_7	165.368159266449	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9654	False	NA	-9	True	AATAAA	-45	NA	106679320	106672373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ENSMUSG00000020719.15_4	chr11	-	2446	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	3	497	junction_13	995.534526816042	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	8980	False	NA	-9	True	AATAAA	-45	NA	106679994	106672373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679841
ENSMUSG00000020719.15_8	chr11	-	1644	1	ISM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	6532	2	1651	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTCTTCATTTATTTAT	1834	False	NA	-10	True	AATAAA	-16	NA	106672826	106671182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106671200_106672800
ENSMUSG00000020720.14_0	chr11	+	1498	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	26	380	-18	60	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	2382	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTATATGTTGTTTT	NA	False	NA	14	True	ATTAAA	-17	NA	107370335	107388619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
ENSMUSG00000020721.17_26	chr11	+	6231	32	NIC	ENSMUSG00000020721.17	novel	6218	32	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	32.985507491541	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGTTACATATGTTTG	NA	False	NA	9	True	AATAAA	-17	NA	107438769	107577769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_107438808_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518178_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ENSMUSG00000020721.17_29	chr11	+	6225	32	FSM	ENSMUSG00000020721.17	ENSMUST00000075012.8	6218	32	-9	2	-5	-2	multi-exon	FALSE	canonical	3	55	junction_15	38.7019615966116	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTATTGTTACATATGTT	NA	False	NA	7	True	AATAAA	-15	NA	107438776	107577767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_107438808_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518175_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ENSMUSG00000020721.17_31	chr11	+	6282	33	NIC	ENSMUSG00000020721.17	novel	13147	33	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	3	55	junction_16	39.9053567832691	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTATTGTTACATATGTT	NA	False	NA	7	True	AATAAA	-15	NA	107438776	107577767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_107438808_107440171_107440228_107446344_107446402_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518175_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ENSMUSG00000020721.17_32	chr11	+	6281	33	FSM	ENSMUSG00000020721.17	ENSMUST00000106746.8	13147	33	-17	6883	-5	0	multi-exon	FALSE	canonical	3	95	junction_1	34.694973856994	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGTTACATATGTTTG	NA	False	NA	9	True	AATAAA	-17	NA	107438776	107577769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_107438808_107440171_107440228_107446344_107446402_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518178_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ENSMUSG00000020721.17_5	chr11	+	6366	32	NNC	ENSMUSG00000020721.17	novel	3753	14	NA	NA	-1051	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	36.7501052969107	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGTTACATATGTTTG	9367	False	NA	9	True	AATAAA	-17	NA	107437704	107577769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_107437878_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518178_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ENSMUSG00000020721.17_7	chr11	+	6412	33	NNC	ENSMUSG00000020721.17	novel	3753	14	NA	NA	-1041	-1	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	38.1200688409334	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATTGTTACATATGTTT	9377	False	NA	8	True	AATAAA	-16	NA	107437714	107577768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_107437878_107440171_107440228_107446344_107446402_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518178_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ENSMUSG00000020721.17_75	chr11	+	2887	10	ISM	ENSMUSG00000020721.17	ENSMUST00000075012.8	6218	32	108134	0	-14958	0	3prime_fragment	FALSE	canonical	3	189	junction_3	15.8098266051197	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGTTACATATGTTTG	7	True	NA	9	True	AATAAA	-17	NA	107546919	107577769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
ENSMUSG00000020721.17_83	chr11	+	3400	1	ISM	ENSMUSG00000020721.17	ENSMUST00000106746.8	13147	33	142454	5	17462	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATTTGGAGAGTGTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	107581247	107584647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_107581200_107584600
ENSMUSG00000020723.4_0	chr11	-	3670	4	FSM	ENSMUSG00000020723.4	ENSMUST00000021066.4	3500	4	-178	8	-178	-8	multi-exon	FALSE	canonical	2	7	junction_1	2.62466929133727	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTTCTATTCTTGATG	NA	False	NA	NA	False	AATAAA	-10	NA	107685561	107623190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_107626145_107627552_107627694_107632746_107632831_107685070
ENSMUSG00000020728.18_0	chr11	+	3144	6	ISM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	74	386110	0	1712	5prime_fragment	FALSE	canonical	3	43	junction_4	6.34350061086148	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGAATTCTATGTGACT	NA	False	NA	NA	False	AATAAA	-11	NA	108316091	108365331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842
ENSMUSG00000020728.18_1	chr11	+	3369	27	FSM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	78	6	4	-5	multi-exon	FALSE	canonical	3	13	junction_14	12.2793543958426	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTATTCTGTTTTCTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	108316095	108751435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842_108362921_108377418_108377467_108377738_108377817_108389069_108389157_108393891_108393992_108397364_108397484_108399047_108399192_108409504_108409660_108409955_108410086_108410721_108410815_108414144_108414205_108422211_108422292_108461113_108461250_108481829_108481938_108497038_108497222_108555321_108555553_108643403_108643467_108648495_108648646_108699475_108699566_108746608_108746711_108750168_108750234_108751017
ENSMUSG00000020728.18_5	chr11	+	3139	26	NIC	ENSMUSG00000020728.18	novel	3453	27	NA	NA	-44	0	combination_of_known_splicesites	TRUE	canonical	2	2	junction_14	13.0859313768642	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCACTGGTTGGCTTTCTT	NA	False	NA	NA	False	CATAAA	-15	NA	108315973	108751176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842_108362921_108377418_108377467_108377738_108377817_108389069_108389157_108393891_108393992_108397364_108397484_108399047_108399192_108409504_108409660_108409955_108410086_108414144_108414205_108422211_108422292_108461113_108461250_108481829_108481938_108497038_108497222_108555321_108555553_108643403_108643467_108648495_108648646_108699475_108699566_108746608_108746711_108750168_108750234_108751017
ENSMUSG00000020728.18_6	chr11	+	3492	28	FSM	ENSMUSG00000020728.18	ENSMUST00000061287.12	3485	28	-12	5	-12	-5	multi-exon	FALSE	canonical	0	0	junction_2	13.1834164439952	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTATTCTGTTTTCTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	108316079	108751435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_108316178_108323581_108323689_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842_108362921_108377418_108377467_108377738_108377817_108389069_108389157_108393891_108393992_108397364_108397484_108399047_108399192_108409504_108409660_108409955_108410086_108410721_108410815_108414144_108414205_108422211_108422292_108461113_108461250_108481829_108481938_108497038_108497222_108555321_108555553_108643403_108643467_108648495_108648646_108699475_108699566_108746608_108746711_108750168_108750234_108751017
ENSMUSG00000020728.18_7	chr11	+	2963	26	NIC	ENSMUSG00000020728.18	novel	3453	27	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_11	13.4761418811172	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCACTGGTTGGCTTTCTT	NA	False	NA	NA	False	CATAAA	-15	NA	108316098	108751176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842_108362921_108377418_108377467_108377738_108377817_108389069_108389157_108393891_108393992_108397364_108397484_108409504_108409660_108409955_108410086_108410721_108410815_108414144_108414205_108422211_108422292_108461113_108461250_108481829_108481938_108497038_108497222_108555321_108555553_108643403_108643467_108648495_108648646_108699475_108699566_108746608_108746711_108750168_108750234_108751017
ENSMUSG00000020728.18_8	chr11	+	3453	27	NIC	ENSMUSG00000020728.18	novel	3395	27	NA	NA	-19	-5	combination_of_known_junctions	FALSE	canonical	1	6	junction_1	12.235908451002	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTATTCTGTTTTCTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	108316310	108751435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_108316477_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842_108362921_108377418_108377467_108377738_108377817_108389069_108389157_108393891_108393992_108397364_108397484_108399047_108399192_108409504_108409660_108409955_108410086_108410721_108410815_108414144_108414205_108422211_108422292_108461113_108461250_108481829_108481938_108497038_108497222_108555321_108555553_108643403_108643467_108648495_108648646_108699475_108699566_108746608_108746711_108750168_108750234_108751017
ENSMUSG00000020732.14_0	chr11	+	2209	9	FSM	ENSMUSG00000020732.14	ENSMUST00000021076.6	2210	9	-7	8	-7	-8	multi-exon	TRUE	canonical	1	1	junction_2	1.36358901432946	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATACTCTGACCGGTT	NA	False	NA	NA	False	ATTAAA	-15	NA	115044975	115053054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115045118_115047752_115047864_115048776_115048819_115049330_115049398_115049484_115049538_115050501_115050568_115051124_115051182_115051263_115051341_115051460
ENSMUSG00000020733.4_0	chr11	+	1917	6	FSM	ENSMUSG00000020733.4	ENSMUST00000021077.4	1925	6	4	4	4	-4	multi-exon	FALSE	canonical	3	130	junction_1	12.6964561984831	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAAGCCTCTGTGTCCTC	NA	False	NA	6	True	NA	NA	NA	115054170	115072003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115054778_115067176_115067339_115068049_115068204_115069875_115069917_115070832_115070923_115071140
ENSMUSG00000020734.14_0	chr11	-	1691	1	NIC	ENSMUSG00000020734.14	novel	4279	13	NA	NA	14567	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTGGTCCTAGCTGCCT	NA	False	NA	NA	False	ATTAAA	-16	NA	115141688	115139997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115140000_115141700
ENSMUSG00000020734.14_3	chr11	-	1608	2	ISM	ENSMUSG00000020734.14	ENSMUST00000003351.13	4279	13	14346	6	14346	-6	3prime_fragment	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCATTTGGTCCTAGCTG	NA	False	NA	NA	False	ATTAAA	-13	NA	115141909	115140000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115141534_115141834
ENSMUSG00000020734.14_4	chr11	-	3593	11	ISM	ENSMUSG00000020734.14	ENSMUST00000003351.13	4279	13	7187	1	7187	-1	3prime_fragment	FALSE	canonical	1	2	junction_5	1.26885775404495	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGGTCCTAGCTGCCTCA	NA	False	NA	NA	False	ATTAAA	-18	NA	115149068	115139995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115141534_115141834_115142068_115143408_115143597_115144033_115144195_115144523_115144754_115144878_115145005_115146098_115146253_115146511_115146678_115146868_115147081_115148162_115148278_115148598
ENSMUSG00000020734.14_9	chr11	-	4361	13	NIC	ENSMUSG00000020734.14	novel	4895	15	NA	NA	29	-1	combination_of_known_splicesites	TRUE	canonical	0	0	junction_11	1.68942791105944	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGGTCCTAGCTGCCTCA	5092	False	NA	NA	False	ATTAAA	-18	NA	115158040	115139995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115141534_115141834_115142068_115143408_115143597_115144033_115144195_115144523_115144754_115144878_115145005_115146098_115146253_115146511_115146678_115146868_115147081_115148162_115148278_115148598_115149198_115151559_115151974_115157815
ENSMUSG00000020736.13_0	chr11	-	1177	2	NIC	ENSMUSG00000020736.13	novel	907	3	NA	NA	-8	8	intron_retention	FALSE	canonical	3	183	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTGATGCTCCTTTTCC	NA	False	NA	0	True	AATAAA	-27	NA	115382649	115381237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115382198_115382432
ENSMUSG00000020736.13_1	chr11	-	1090	3	FSM	ENSMUSG00000020736.13	ENSMUST00000124778.8	907	3	11	-194	11	-24	multi-exon	FALSE	canonical	3	183	junction_2	15.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAAAACCAAAC	NA	False	NA	-32	True	AATACA	-24	NA	115382666	115381269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115382025_115382096_115382198_115382432
ENSMUSG00000020736.13_11	chr11	-	1269	2	FSM	ENSMUSG00000020736.13	ENSMUST00000125940.2	395	2	-618	-256	-5	-24	multi-exon	FALSE	canonical	3	196	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAAAACCAAAC	NA	False	NA	-32	True	AATACA	-24	NA	115382646	115381269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115381571_115381678
ENSMUSG00000020736.13_2	chr11	-	810	5	FSM	ENSMUSG00000020736.13	ENSMUST00000021082.7	858	5	24	24	13	-24	multi-exon	FALSE	canonical	3	183	junction_4	11.1214882097676	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAAAACCAAAC	NA	False	NA	-32	True	AATACA	-24	NA	115382664	115381269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115381571_115381678_115381794_115381963_115382025_115382096_115382198_115382432
ENSMUSG00000020736.13_3	chr11	-	303	1	ISM	ENSMUSG00000020736.13	ENSMUST00000106530.8	836	5	1069	24	456	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAAAACCAAAC	NA	False	NA	-32	True	AATACA	-24	NA	115381572	115381269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115381300_115381600
ENSMUSG00000020736.13_5	chr11	-	878	4	NIC	ENSMUSG00000020736.13	novel	836	5	NA	NA	20	-21	intron_retention	FALSE	canonical	3	183	junction_3	12.8322510366134	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAAACCAAACGCG	NA	False	NA	-29	True	AATACA	-27	NA	115382621	115381266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115381794_115381963_115382025_115382096_115382198_115382432
ENSMUSG00000020736.13_7	chr11	-	1000	4	NIC	ENSMUSG00000020736.13	novel	858	5	NA	NA	9	-8	intron_retention	FALSE	canonical	3	183	junction_3	12.7104506432917	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGCGAGGCTTTGGATCT	NA	False	NA	-16	True	AATAAA	-11	NA	115382668	115381253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115381571_115381678_115382025_115382096_115382198_115382432
ENSMUSG00000020737.13_0	chr11	-	1369	5	FSM	ENSMUSG00000020737.13	ENSMUST00000021083.7	1375	5	4	2	4	-2	multi-exon	FALSE	canonical	3	1461	junction_2	125.475844288851	840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCGTGTTTTGTCTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	115405209	115388180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115389126_115391491_115391511_115392830_115392929_115393857_115394001_115405045
ENSMUSG00000020737.13_1	chr11	-	3735	4	FSM	ENSMUSG00000020737.13	ENSMUST00000155399.2	696	4	-12	-3027	4	-2	multi-exon	FALSE	canonical	3	1461	junction_1	143.613679323694	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCGTGTTTTGTCTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	115405209	115388180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115391511_115392830_115392929_115393857_115394001_115405045
ENSMUSG00000020738.17_0	chr11	-	984	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	60	7	13	-7	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	1487	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGAGCTGTTCTCTTTA	NA	False	NA	-58	True	AATAAA	-11	NA	115427042	115413934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
ENSMUSG00000020739.12_2	chr11	+	2096	19	FSM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	47	87	-44	-8	multi-exon	TRUE	canonical	3	862	junction_16	81.0315439264927	1162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAGACCAATTGTTA	NA	False	NA	4	True	AATAAA	-10	NA	115455306	115474724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
ENSMUSG00000020739.12_3	chr11	+	2764	18	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-43	-8	intron_retention	FALSE	canonical	3	862	junction_15	82.7709559076643	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAGACCAATTGTTA	NA	False	NA	4	True	AATAAA	-10	NA	115455307	115474724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
ENSMUSG00000020740.14_0	chr11	-	3647	17	FSM	ENSMUSG00000020740.14	ENSMUST00000019135.14	3816	17	167	2	0	-2	multi-exon	TRUE	canonical	3	352	junction_6	42.6075385788712	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGGCATCTTTCAATAC	3548	False	NA	-4	True	AATAAA	-13	NA	115494710	115475082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
ENSMUSG00000020740.14_3	chr11	-	3588	17	NIC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	93	junction_13	83.8961178705546	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGGCATCTTTCAATAC	3548	False	NA	-4	True	AATAAA	-13	NA	115494710	115475082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482521_115483257_115483357_115485531_115485608_115485734_115485820_115494653
ENSMUSG00000020740.14_4	chr11	-	1090	1	ISM	ENSMUSG00000020740.14	ENSMUST00000019135.14	3816	17	18707	0	2683	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	NA	False	NA	-2	True	AATAAA	-15	NA	115476170	115475080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115475100_115476200
ENSMUSG00000020741.18_0	chr11	+	5390	26	FSM	ENSMUSG00000020741.18	ENSMUST00000092915.12	5379	26	-19	8	1	-8	multi-exon	TRUE	canonical	0	0	junction_12	69.5319897601097	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTGCTGCCCCAGCCTT	NA	False	NA	18	True	AATAAA	-12	NA	74540321	74561665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_74540521_74547248_74547452_74547993_74548166_74550011_74550156_74550308_74550434_74550519_74550675_74550774_74550901_74551177_74551326_74551489_74551583_74552222_74552918_74554205_74554433_74554609_74554715_74554856_74554958_74555599_74555753_74555832_74555896_74556007_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
ENSMUSG00000020741.18_118	chr11	+	2191	8	ISM	ENSMUSG00000020741.18	ENSMUST00000155558.8	6098	24	16629	0	1687	0	3prime_fragment	FALSE	canonical	3	303	junction_6	22.9266799397825	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCCAGCCTTTCCTGTGT	NA	False	NA	26	True	AATAAA	-20	NA	74556994	74561673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
ENSMUSG00000020741.18_14	chr11	+	5393	26	NNC	ENSMUSG00000020741.18	novel	5379	26	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	82.5694955779675	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCCCAGCCTTTCCTGT	NA	False	NA	24	True	AATAAA	-18	NA	74540321	74561671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_74540521_74547248_74547452_74547993_74548166_74550011_74550156_74550308_74550434_74550519_74550675_74550774_74550901_74551177_74551326_74551489_74551583_74552222_74552918_74554205_74554433_74554612_74554715_74554856_74554958_74555599_74555753_74555832_74555896_74556007_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
ENSMUSG00000020741.18_96	chr11	+	3687	17	ISM	ENSMUSG00000020741.18	ENSMUST00000092915.12	5379	26	12220	8	-2747	-8	3prime_fragment	FALSE	canonical	0	0	junction_3	84.1276699056262	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTGCTGCCCCAGCCTT	NA	False	NA	18	True	AATAAA	-12	NA	74552560	74561665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_74552918_74554205_74554433_74554609_74554715_74554856_74554958_74555599_74555753_74555832_74555896_74556007_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
ENSMUSG00000020743.16_0	chr11	-	1321	6	FSM	ENSMUSG00000020743.16	ENSMUST00000021087.14	1372	6	47	4	-2	-4	multi-exon	FALSE	canonical	3	302	junction_2	38.1030182531515	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTGCGTATTTCCATAG	NA	False	NA	-4	True	AATAAA	-14	NA	115503748	115498747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUSG00000020743.16_15	chr11	-	2194	4	NIC	ENSMUSG00000020743.16	novel	1656	5	NA	NA	2	-3	intron_retention	FALSE	canonical	3	339	junction_1	27.7168220079832	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCGTATTTCCATAGC	NA	False	NA	-3	True	AATAAA	-15	NA	115503744	115498746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728
ENSMUSG00000020743.16_2	chr11	-	2641	3	ISM	ENSMUSG00000020743.16	ENSMUST00000142637.2	621	4	-14	-1256	2	-3	intron_retention	FALSE	canonical	3	382	junction_2	12	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCGTATTTCCATAGC	NA	False	NA	-3	True	AATAAA	-15	NA	115503744	115498746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115500262_115500364_115500475_115502728
ENSMUSG00000020743.16_4	chr11	-	1691	5	FSM	ENSMUSG00000020743.16	ENSMUST00000106507.9	1656	5	-38	3	-38	-3	multi-exon	FALSE	canonical	3	302	junction_2	39.92101576864	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCGTATTTCCATAGC	NA	False	NA	-3	True	AATAAA	-15	NA	115503367	115498746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728
ENSMUSG00000020743.16_5	chr11	-	1888	4	FSM	ENSMUSG00000020743.16	ENSMUST00000142637.2	621	4	-16	-1251	0	-8	multi-exon	FALSE	canonical	3	324	junction_3	34.4222150491349	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAAACTGCGTATTTCC	NA	False	NA	-8	True	AATAAA	-10	NA	115503746	115498751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUSG00000020743.16_8	chr11	-	1443	5	NIC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	2	-4	intron_retention	FALSE	canonical	3	324	junction_4	32.8129166640212	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTGCGTATTTCCATAG	NA	False	NA	-4	True	AATAAA	-14	NA	115503744	115498747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUSG00000020744.14_0	chr11	-	1419	6	ISM	ENSMUSG00000020744.14	ENSMUST00000021089.11	2307	7	3775	809	-1545	207	3prime_fragment	FALSE	canonical	3	138	junction_5	11.4612390255155	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCATTCCTTGTGTCACTC	NA	False	NA	-16	True	ATTAAA	-8	NA	115515196	115505812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024
ENSMUSG00000020744.14_17	chr11	-	1777	8	NIC	ENSMUSG00000020744.14	novel	2614	8	NA	NA	-1	207	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	65.2083004607511	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCATTCCTTGTGTCACTC	NA	False	NA	-16	True	ATTAAA	-8	NA	115518957	115505812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518462_115518756_115518890
ENSMUSG00000020744.14_2	chr11	-	1466	7	FSM	ENSMUSG00000020744.14	ENSMUST00000021089.11	2307	7	36	805	-2	211	multi-exon	FALSE	canonical	3	102	junction_6	21.3053201493586	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTGTGTCACTCCTAT	NA	False	NA	-12	True	ATTAAA	-12	NA	115518935	115505808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518890
ENSMUSG00000020744.14_3	chr11	-	1811	7	ISM	ENSMUSG00000020744.14	ENSMUST00000178003.8	2614	8	265	803	63	207	3prime_fragment	FALSE	canonical	2	19	junction_6	50.5854612402505	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCATTCCTTGTGTCACTC	NA	False	NA	-16	True	ATTAAA	-8	NA	115518856	115505812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518462
ENSMUSG00000020745.16_0	chr11	-	1906	11	FSM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	322	3575	-13	-3574	multi-exon	FALSE	canonical	3	936	junction_5	79.0964600977819	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAAGTATTCATGCATG	NA	False	NA	-10	True	ATTAAA	-7	NA	74615174	74568349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
ENSMUSG00000020745.16_3	chr11	-	2842	1	ISM	ENSMUSG00000020745.16	ENSMUST00000126341.8	8570	9	47536	9	46372	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAACTAGATCTGGTGGG	5117	False	NA	NA	False	ATTAAA	-38	NA	74567625	74564783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_74564800_74567600
ENSMUSG00000020747.19_0	chr11	+	4962	32	FSM	ENSMUSG00000020747.19	ENSMUST00000093912.11	5329	32	25	342	4	-9	multi-exon	FALSE	canonical	3	50	junction_13	18.7440729445739	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAACATCCTGTGGTGG	NA	False	NA	6	True	ATTAAA	-14	NA	115656283	115689850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115656380_115668073_115668204_115676265_115676386_115676640_115676769_115677001_115677139_115678187_115678391_115679064_115679217_115679488_115679592_115679770_115679858_115680069_115680187_115680444_115680502_115680750_115680856_115680995_115681161_115681792_115682003_115682572_115682889_115683142_115683317_115683686_115683790_115683882_115684101_115684833_115685016_115685091_115685231_115685488_115685605_115685806_115685907_115686142_115686252_115686450_115686641_115686891_115686970_115687215_115687302_115687561_115687644_115687955_115688105_115688192_115688288_115688388_115688483_115688633_115688805_115689100
ENSMUSG00000020747.19_5	chr11	+	4903	32	NIC	ENSMUSG00000020747.19	novel	5329	32	NA	NA	-2	-8	combination_of_known_junctions	TRUE	canonical	3	36	junction_13	20.1870029585754	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACATCCTGTGGTGGA	NA	False	NA	7	True	ATTAAA	-15	NA	115656277	115689851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_115656380_115668073_115668204_115676265_115676386_115676640_115676769_115677001_115677139_115678187_115678391_115679064_115679217_115679488_115679592_115679770_115679858_115680069_115680187_115680444_115680502_115680750_115680856_115680995_115681161_115681858_115682003_115682572_115682889_115683142_115683317_115683686_115683790_115683882_115684101_115684833_115685016_115685091_115685231_115685488_115685605_115685806_115685907_115686142_115686252_115686450_115686641_115686891_115686970_115687215_115687302_115687561_115687644_115687955_115688105_115688192_115688288_115688388_115688483_115688633_115688805_115689100
ENSMUSG00000020747.19_63	chr11	+	3069	18	ISM	ENSMUSG00000020747.19	ENSMUST00000239299.2	5014	31	11132	8	2877	-8	3prime_fragment	FALSE	canonical	3	94	junction_4	12.1908128094486	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACATCCTGTGGTGGA	NA	False	NA	7	True	ATTAAA	-15	NA	115682656	115689851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115682889_115683142_115683317_115683686_115683790_115683882_115684101_115684833_115685016_115685091_115685231_115685488_115685605_115685806_115685907_115686142_115686252_115686450_115686641_115686891_115686970_115687215_115687302_115687561_115687644_115687955_115688105_115688192_115688288_115688388_115688483_115688633_115688805_115689100
ENSMUSG00000020747.19_68	chr11	+	2277	14	ISM	ENSMUSG00000020747.19	ENSMUST00000239299.2	5014	31	13374	8	5119	-8	3prime_fragment	FALSE	canonical	3	95	junction_10	11.7564032659432	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACATCCTGTGGTGGA	NA	False	NA	7	True	ATTAAA	-15	NA	115684898	115689851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115685016_115685091_115685231_115685488_115685605_115685806_115685907_115686142_115686252_115686450_115686641_115686891_115686970_115687215_115687302_115687561_115687644_115687955_115688105_115688192_115688288_115688388_115688483_115688633_115688805_115689100
ENSMUSG00000020752.12_0	chr11	-	3973	19	FSM	ENSMUSG00000020752.12	ENSMUST00000021097.10	3971	19	-10	8	-10	-8	multi-exon	FALSE	canonical	3	54	junction_14	12.1025708930881	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACAATCTTTTCTTGGG	NA	False	NA	-10	True	AATAAA	-25	NA	115824313	115783428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115783985_115784085_115784156_115784320_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614
ENSMUSG00000020752.12_1	chr11	-	3575	21	NNC	ENSMUSG00000020752.12	novel	3971	19	NA	NA	-5	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	24.3422985767573	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAATCTTTTCTTGGGTG	NA	False	NA	-8	True	AATAAA	-27	NA	115824308	115783426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_115783470_115783502_115783985_115784085_115784156_115784320_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614_115823745_115824106
ENSMUSG00000020752.12_2	chr11	-	3938	20	NNC	ENSMUSG00000020752.12	novel	3971	19	NA	NA	-6	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.057499437219	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAATCTTTTCTTGGGTG	NA	False	NA	-8	True	AATAAA	-27	NA	115824309	115783426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_115783470_115783502_115783985_115784085_115784156_115784320_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614
ENSMUSG00000020755.10_0	chr11	+	1206	11	FSM	ENSMUSG00000020755.10	ENSMUST00000140991.2	3654	11	371	2077	16	-887	multi-exon	FALSE	canonical	3	284	junction_4	19.7585424563656	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGGCATGTCAGGTGGA	415	False	NA	15	True	ATTAAA	-16	NA	115824478	115855474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115824608_115826191_115826302_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768_115854854_115855036
ENSMUSG00000020755.10_10	chr11	+	2357	1	ISM	ENSMUSG00000020755.10	ENSMUST00000140991.2	3654	11	31081	6	30689	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCCTGCCTTTGGTTTTG	NA	False	NA	1	True	NA	NA	NA	115855188	115857545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115855200_115857500
ENSMUSG00000020758.16_10	chr11	+	3033	16	ISM	ENSMUSG00000020758.16	ENSMUST00000068981.13	5584	38	15163	8	17	-7	3prime_fragment	FALSE	canonical	3	7	junction_7	4.73568016938081	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTTAGCCACTCTGTCC	830	False	NA	NA	False	AATAAA	-11	NA	115883774	115899230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115884030_115884102_115884283_115885087_115885237_115888775_115888981_115890623_115890782_115891064_115891246_115891368_115891507_115894167_115894351_115894428_115894561_115896356_115896594_115897286_115897437_115897811_115898001_115898084_115898241_115898326_115898492_115898580_115898692_115898786
ENSMUSG00000020758.16_11	chr11	+	2252	12	ISM	ENSMUSG00000020758.16	ENSMUST00000068981.13	5584	38	22011	1	6865	0	3prime_fragment	FALSE	canonical	3	7	junction_3	5.04197259049529	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCACTCTGTCCGTTCTTC	2992	False	NA	NA	False	AATAAA	-18	NA	115890622	115899237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115890782_115891064_115891246_115891368_115891507_115894167_115894351_115894428_115894561_115896356_115896594_115897286_115897437_115897811_115898001_115898084_115898241_115898326_115898492_115898580_115898692_115898786
ENSMUSG00000020758.16_3	chr11	+	5788	39	NIC	ENSMUSG00000020758.16	novel	6208	40	NA	NA	-33	-1	combination_of_known_junctions	TRUE	canonical	0	0	junction_9	6.09118158281234	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCACTCTGTCCGTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	115865771	115899236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_115865981_115868611_115868704_115869901_115869985_115870186_115870289_115870439_115870645_115871500_115871598_115871766_115871939_115873526_115873791_115874084_115874175_115874468_115874592_115874862_115875028_115875847_115875925_115877442_115877646_115879285_115879390_115879482_115879582_115879715_115879846_115880547_115880668_115880763_115880871_115881500_115881535_115881709_115881902_115882134_115882239_115882483_115882543_115882711_115882736_115883880_115884030_115884102_115884283_115885087_115885237_115888775_115888981_115890623_115890782_115891064_115891246_115891368_115891507_115894167_115894351_115894428_115894561_115896356_115896594_115897286_115897437_115897811_115898001_115898084_115898241_115898326_115898492_115898580_115898692_115898786
ENSMUSG00000020758.16_7	chr11	+	3925	26	NIC	ENSMUSG00000020758.16	novel	6208	40	NA	NA	-1496	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_5	5.35163526410386	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCACTCTGTCCGTTCTTC	1745	False	NA	NA	False	AATAAA	-18	NA	115879267	115899237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_115879390_115879482_115879582_115879715_115879846_115880547_115880668_115880763_115880871_115881500_115881535_115881709_115881902_115882134_115882239_115882483_115882543_115882711_115882736_115883880_115884030_115884102_115884283_115885087_115885237_115888775_115888981_115890623_115890782_115891064_115891246_115891368_115891507_115894167_115894351_115894428_115894561_115896356_115896594_115897286_115897437_115897811_115898001_115898084_115898241_115898326_115898492_115898580_115898692_115898786
ENSMUSG00000020758.16_8	chr11	+	3966	26	ISM	ENSMUSG00000020758.16	ENSMUST00000068981.13	5584	38	10616	3	-1536	-2	3prime_fragment	FALSE	canonical	1	3	junction_3	5.51594053630023	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCCACTCTGTCCGTTCT	1705	False	NA	NA	False	AATAAA	-16	NA	115879227	115899235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115879390_115879482_115879582_115879715_115879846_115880544_115880668_115880763_115880871_115881500_115881535_115881709_115881902_115882134_115882239_115882483_115882543_115882711_115882736_115883880_115884030_115884102_115884283_115885087_115885237_115888775_115888981_115890623_115890782_115891064_115891246_115891368_115891507_115894167_115894351_115894428_115894561_115896356_115896594_115897286_115897437_115897811_115898001_115898084_115898241_115898326_115898492_115898580_115898692_115898786
ENSMUSG00000020766.5_0	chr11	-	1311	8	FSM	ENSMUSG00000020766.5	ENSMUST00000021114.5	1406	8	26	69	26	-69	multi-exon	FALSE	canonical	3	761	junction_4	62.9907670591006	684	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCGGTAGCCACCTGCC	NA	False	NA	-39	True	AATAAA	-13	NA	115903519	115899351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115899541_115899628_115899792_115899873_115900025_115900746_115900929_115901066_115901203_115901388_115901509_115901852_115902043_115903339
ENSMUSG00000020770.14_0	chr11	+	3673	16	FSM	ENSMUSG00000020770.14	ENSMUST00000106452.2	3696	16	23	0	22	0	multi-exon	FALSE	canonical	3	42	junction_8	23.4630679058719	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTTGTTTATATGGGA	8845	False	NA	19	True	AATAAA	-13	NA	115921170	115952040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115921318_115938502_115938713_115939810_115939988_115940139_115940271_115940862_115940999_115941512_115941631_115942283_115942369_115943841_115943946_115944315_115944517_115945222_115945289_115945662_115945838_115946806_115946909_115947016_115947206_115949068_115949251_115949814_115950073_115950648
ENSMUSG00000020770.14_1	chr11	+	3711	16	FSM	ENSMUSG00000020770.14	ENSMUST00000021116.12	3735	16	24	0	23	0	multi-exon	FALSE	canonical	3	78	junction_13	17.1308688240459	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTTGTTTATATGGGA	8846	False	NA	19	True	AATAAA	-13	NA	115921171	115952040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115921318_115938502_115938713_115939810_115939988_115940139_115940271_115940862_115940999_115941512_115941631_115942283_115942369_115943841_115943985_115944315_115944517_115945222_115945289_115945662_115945838_115946806_115946909_115947016_115947206_115949068_115949251_115949814_115950073_115950648
ENSMUSG00000020770.14_16	chr11	+	4055	15	NIC	ENSMUSG00000020770.14	novel	3735	16	NA	NA	10	0	intron_retention	FALSE	canonical	3	78	junction_12	15.2015372477219	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTTGTTTATATGGGA	8833	False	NA	19	True	AATAAA	-13	NA	115921158	115952040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_115921318_115938502_115938713_115939810_115939988_115940139_115940271_115940862_115940999_115941512_115941631_115942283_115942369_115943841_115944517_115945222_115945289_115945662_115945838_115946806_115946909_115947016_115947206_115949068_115949251_115949814_115950073_115950648
ENSMUSG00000020773.12_0	chr11	-	1812	6	FSM	ENSMUSG00000020773.12	ENSMUST00000106441.8	2192	6	373	7	373	-7	multi-exon	FALSE	canonical	3	60	junction_4	39.5777715390849	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGATTCCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	116000690	115996584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603_115998835_115999091_115999188_116000359
ENSMUSG00000020773.12_1	chr11	-	427	1	ISM	ENSMUSG00000020773.12	ENSMUST00000141531.8	1503	4	1939	2	903	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATTCCCCCTTTCATTC	NA	False	NA	NA	False	NA	NA	NA	115997006	115996579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115996600_115997000
ENSMUSG00000020773.12_2	chr11	-	2190	6	FSM	ENSMUSG00000020773.12	ENSMUST00000021120.6	2204	6	10	4	1	-4	multi-exon	FALSE	canonical	3	54	junction_2	42.4951761968344	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGATTCCCCCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	116001062	115996581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115997468_115997757_115997833_115998249_115998449_115998603_115998835_115999091_115999188_116000359
ENSMUSG00000020773.12_4	chr11	-	1266	3	FSM	ENSMUSG00000020773.12	ENSMUST00000127235.2	692	3	11	-585	11	-2	multi-exon	FALSE	canonical	3	127	junction_2	17	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATTCCCCCTTTCATTC	NA	False	NA	NA	False	NA	NA	NA	115998555	115996579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115997468_115997757_115997830_115998249
ENSMUSG00000020773.12_5	chr11	-	1450	4	FSM	ENSMUSG00000020773.12	ENSMUST00000134691.2	782	4	-32	-636	-32	-4	multi-exon	FALSE	canonical	3	54	junction_2	44.1437047229462	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGATTCCCCCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	115998893	115996581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115997468_115997757_115997833_115998249_115998449_115998603
ENSMUSG00000020773.12_6	chr11	-	1445	4	FSM	ENSMUSG00000020773.12	ENSMUST00000141531.8	1503	4	54	4	-30	-4	multi-exon	FALSE	canonical	3	121	junction_3	17.6131264181639	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGATTCCCCCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	115998891	115996581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603
ENSMUSG00000020773.12_8	chr11	-	1259	3	ISM	ENSMUSG00000020773.12	ENSMUST00000134691.2	782	4	314	-636	19	-4	3prime_fragment	FALSE	canonical	3	54	junction_2	53.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGATTCCCCCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	115998547	115996581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115997468_115997757_115997833_115998249
ENSMUSG00000020774.10_1	chr11	-	1525	6	FSM	ENSMUSG00000020774.10	ENSMUST00000021119.9	1530	6	2	3	2	-3	multi-exon	FALSE	canonical	3	11	junction_5	4.1182520563948	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTAGTGATGACTGTG	NA	False	NA	NA	False	ATTAAA	-13	NA	73215458	73195820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73215080
ENSMUSG00000020774.10_9	chr11	-	1397	2	NIC	ENSMUSG00000020774.10	novel	581	3	NA	NA	2	1	intron_retention	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATAGTGATGATGCCT	NA	False	NA	NA	False	AATAAA	-16	NA	73215458	73213038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_73214058_73215080
ENSMUSG00000020775.14_0	chr11	-	1341	9	FSM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	65	5	-14	-1	multi-exon	FALSE	canonical	3	763	junction_8	33.509093914936	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCAATATGTCTTCACTT	472	False	NA	-7	True	AATAAA	-15	NA	116029629	116022647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
ENSMUSG00000020775.14_4	chr11	-	1817	7	NIC	ENSMUSG00000020775.14	novel	1411	9	NA	NA	-14	-1	intron_retention	FALSE	canonical	3	763	junction_6	34.4722110305291	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCAATATGTCTTCACTT	472	False	NA	-7	True	AATAAA	-15	NA	116029629	116022647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116026152_116029267_116029448_116029536
ENSMUSG00000020775.14_5	chr11	-	1416	8	NIC	ENSMUSG00000020775.14	novel	1411	9	NA	NA	-15	-1	intron_retention	FALSE	canonical	3	763	junction_7	35.5883493891596	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCAATATGTCTTCACTT	471	False	NA	-7	True	AATAAA	-15	NA	116029630	116022647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116026152_116029267_116029448_116029536
ENSMUSG00000020776.19_0	chr11	-	5256	30	FSM	ENSMUSG00000020776.19	ENSMUST00000103031.8	5252	30	-5	1	-4	0	multi-exon	FALSE	canonical	3	14	junction_29	8.33099451920079	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGTTTTGGATTTGCA	NA	False	NA	-10	True	ATTAAA	-17	NA	116058984	116033111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116034293_116035258_116035369_116036250_116036369_116036448_116036587_116036660_116036838_116037261_116037448_116037529_116037653_116038533_116038653_116038729_116038870_116038946_116039055_116039638_116039846_116039944_116040046_116040192_116040349_116041614_116041674_116041844_116041940_116042247_116042344_116043302_116043774_116044778_116044879_116045532_116045691_116045816_116045953_116046209_116046327_116046783_116046862_116048514_116048654_116049714_116049766_116050887_116050937_116052250_116052336_116054143_116054186_116055488_116055517_116056657_116056739_116058377
ENSMUSG00000020776.19_12	chr11	-	5343	31	NIC	ENSMUSG00000020776.19	novel	5223	32	NA	NA	-4	-6	combination_of_known_junctions	FALSE	canonical	2	6	junction_30	9.91945338995832	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCGACTTCTGTTTTGGA	NA	False	NA	-16	True	ATTAAA	-11	NA	116058984	116033117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116034293_116035258_116035369_116036250_116036369_116036448_116036587_116036660_116036838_116037261_116037448_116037529_116037653_116038533_116038653_116038729_116038870_116038946_116039055_116039638_116039846_116039944_116040046_116040192_116040349_116041614_116041674_116041844_116041940_116042247_116042344_116043302_116043771_116044778_116044879_116045532_116045691_116045816_116045953_116046209_116046327_116046783_116046862_116048514_116048654_116049714_116049766_116050887_116050937_116052250_116052336_116054143_116054186_116055488_116055517_116056657_116056739_116057958_116058055_116058377
ENSMUSG00000020776.19_13	chr11	-	5344	31	NIC	ENSMUSG00000020776.19	novel	5252	30	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_30	9.85455337507602	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGTTTTGGATTTGCA	NA	False	NA	-10	True	ATTAAA	-17	NA	116058976	116033111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116034293_116035258_116035369_116036250_116036369_116036448_116036587_116036660_116036838_116037261_116037448_116037529_116037653_116038533_116038653_116038729_116038870_116038946_116039055_116039638_116039846_116039944_116040046_116040192_116040349_116041614_116041674_116041844_116041940_116042247_116042344_116043302_116043774_116044778_116044879_116045532_116045691_116045816_116045953_116046209_116046327_116046783_116046862_116048514_116048654_116049714_116049766_116050887_116050937_116052250_116052336_116054143_116054186_116055488_116055517_116056657_116056739_116057958_116058055_116058377
ENSMUSG00000020776.19_15	chr11	-	2456	11	ISM	ENSMUSG00000020776.19	ENSMUST00000106435.9	4651	29	17046	0	-1729	0	3prime_fragment	FALSE	canonical	3	33	junction_8	5.90338885725818	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGTTTTGGATTTGCA	NA	False	NA	-10	True	ATTAAA	-17	NA	116039694	116033111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116034293_116035258_116035369_116036250_116036369_116036448_116036587_116036660_116036838_116037261_116037448_116037529_116037653_116038533_116038653_116038729_116038870_116038946_116039055_116039638
ENSMUSG00000020776.19_18	chr11	-	5163	29	NIC	ENSMUSG00000020776.19	novel	4651	29	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_28	9.41286570691022	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGTTTTGGATTTGCA	NA	False	NA	-10	True	ATTAAA	-17	NA	116058972	116033111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116034293_116035258_116035369_116036250_116036369_116036448_116036587_116036660_116036838_116037261_116037448_116037529_116037653_116038533_116038653_116038729_116038870_116038946_116039055_116039638_116039846_116039944_116040046_116040192_116040349_116041614_116041674_116041844_116041940_116042247_116042344_116043302_116043774_116044778_116044879_116045532_116045691_116045816_116045953_116046209_116046327_116046783_116046862_116048514_116048654_116049714_116049766_116050887_116050937_116052250_116052336_116054143_116054186_116055488_116055517_116058377
ENSMUSG00000020776.19_19	chr11	-	5244	30	NIC	ENSMUSG00000020776.19	novel	5223	32	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_29	8.41449968768522	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCTGTTTTGGATTTGC	NA	False	NA	-11	True	ATTAAA	-16	NA	116058976	116033112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116034293_116035258_116035369_116036250_116036369_116036448_116036587_116036660_116036838_116037261_116037448_116037529_116037653_116038533_116038653_116038729_116038870_116038946_116039055_116039638_116039846_116039944_116040046_116040192_116040349_116041614_116041674_116041844_116041940_116042247_116042344_116043302_116043771_116044778_116044879_116045532_116045691_116045816_116045953_116046209_116046327_116046783_116046862_116048514_116048654_116049714_116049766_116050887_116050937_116052250_116052336_116054143_116054186_116055488_116055517_116056657_116056739_116058377
ENSMUSG00000020776.19_29	chr11	-	5149	29	NIC	ENSMUSG00000020776.19	novel	5223	32	NA	NA	1	-12	combination_of_known_junctions	FALSE	canonical	3	5	junction_28	9.48811017504948	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGTTTCGACTTCTGT	NA	False	NA	-22	True	ATTAAA	-5	NA	116058973	116033123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116034293_116035258_116035369_116036250_116036369_116036448_116036587_116036660_116036838_116037261_116037448_116037529_116037653_116038533_116038653_116038729_116038870_116038946_116039055_116039638_116039846_116039944_116040046_116040192_116040349_116041614_116041674_116041844_116041940_116042247_116042344_116043302_116043771_116044778_116044879_116045532_116045691_116045816_116045953_116046209_116046327_116046783_116046862_116048514_116048654_116049714_116049766_116050887_116050937_116052250_116052336_116054143_116054186_116055488_116055517_116058377
ENSMUSG00000020776.19_4	chr11	-	825	1	ISM	ENSMUSG00000020776.19	ENSMUST00000126861.8	3391	4	4029	1	4029	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGTTTTGGATTTGCA	NA	False	NA	-10	True	ATTAAA	-17	NA	116033936	116033111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116033100_116033900
ENSMUSG00000020777.17_0	chr11	-	3722	14	FSM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	262	3	18	-3	multi-exon	FALSE	canonical	3	53	junction_12	15.262593015675	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCTTGGCTGTTACGTGT	NA	False	NA	-2	True	AATAAA	-12	NA	116089609	116062716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
ENSMUSG00000020777.17_11	chr11	-	1638	9	ISM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	243	5990	-1	1842	5prime_fragment	FALSE	canonical	3	53	junction_7	16.7663166795811	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACATAATTACAATTCGA	NA	False	NA	NA	False	NA	NA	NA	116089628	116068703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
ENSMUSG00000020777.17_12	chr11	-	1611	9	ISM	ENSMUSG00000020777.17	ENSMUST00000072948.11	3743	14	26	5990	26	1842	5prime_fragment	FALSE	canonical	2	9	junction_6	37.1172129880464	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACATAATTACAATTCGA	NA	False	NA	NA	False	NA	NA	NA	116089601	116068703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116080240_116080402_116089047_116089208_116089421
ENSMUSG00000020777.17_15	chr11	-	2104	3	ISM	ENSMUSG00000020777.17	ENSMUST00000130229.8	3292	10	7448	2	6396	-2	3prime_fragment	FALSE	canonical	3	72	junction_2	13	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTGGCTGTTACGTGTA	NA	False	NA	-1	True	AATAAA	-13	NA	116065644	116062715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116064425_116065118_116065326_116065456
ENSMUSG00000020777.17_2	chr11	-	3737	14	FSM	ENSMUSG00000020777.17	ENSMUST00000072948.11	3743	14	2	4	2	-4	multi-exon	FALSE	canonical	2	9	junction_11	29.8427833148373	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATCTTGGCTGTTACGTG	NA	False	NA	-3	True	AATAAA	-11	NA	116089625	116062717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116080240_116080402_116089047_116089208_116089421
ENSMUSG00000020777.17_4	chr11	-	3880	15	NIC	ENSMUSG00000020777.17	novel	3743	14	NA	NA	23	-1	combination_of_known_junctions	TRUE	canonical	1	1	junction_12	30.2334454617696	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGGCTGTTACGTGTAG	NA	False	NA	0	True	AATAAA	-14	NA	116089604	116062714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116080240_116080402_116089047_116089208_116089421
ENSMUSG00000020778.13_2	chr11	+	724	3	NIC	ENSMUSG00000020778.13	novel	902	4	NA	NA	13	-7	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	63.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGTATAGTGTGTGTGCT	9080	False	NA	0	True	AATAAA	-7	NA	116089693	116106137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_116089810_116095670_116095806_116105664
ENSMUSG00000020778.13_3	chr11	+	869	4	FSM	ENSMUSG00000020778.13	ENSMUST00000021130.7	902	4	31	2	-12	-2	multi-exon	FALSE	canonical	3	95	junction_3	16.0277537068951	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTGTGTGTGCTGATGC	9098	False	NA	5	True	AATAAA	-12	NA	116089711	116106142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116089810_116095670_116095806_116096436_116096595_116105664
ENSMUSG00000020780.16_0	chr11	-	2423	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	98	5	16	-5	multi-exon	FALSE	canonical	3	572	junction_9	48.1105209099031	1000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGAGACTGTGTCTGGTTT	9915	False	NA	-7	True	ATTAAA	-12	NA	116164945	116135996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
ENSMUSG00000020780.16_1	chr11	-	2416	16	NNC	ENSMUSG00000020780.16	novel	2526	16	NA	NA	22	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	165.103388483971	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGAGACTGTGTCTGGTTT	9921	False	NA	-7	True	ATTAAA	-12	NA	116164939	116135996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162739_116162806_116164751
ENSMUSG00000020781.15_0	chr11	+	2037	10	NIC	ENSMUSG00000020781.15	novel	1979	11	NA	NA	8	-2	intron_retention	FALSE	canonical	3	180	junction_1	22.7063922038174	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTGTGGTTCAATACTT	5962	False	NA	NA	False	ATTAAA	-14	NA	115705579	115713913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
ENSMUSG00000020781.15_2	chr11	+	1943	11	FSM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	29	7	7	-2	multi-exon	FALSE	canonical	3	156	junction_1	26.8730348118704	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTGTGGTTCAATACTT	5961	False	NA	NA	False	ATTAAA	-14	NA	115705578	115713913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115705646_115705740_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
ENSMUSG00000020781.15_7	chr11	+	2033	10	NIC	ENSMUSG00000020781.15	novel	1979	11	NA	NA	12	-2	intron_retention	FALSE	canonical	3	156	junction_1	27.0203398467173	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTGTGGTTCAATACTT	5966	False	NA	NA	False	ATTAAA	-14	NA	115705583	115713913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_115705646_115705740_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
ENSMUSG00000020782.19_0	chr11	+	3508	26	FSM	ENSMUSG00000020782.19	ENSMUST00000103032.11	3551	26	13	30	4	-28	multi-exon	TRUE	canonical	3	630	junction_7	88.2626444199357	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACACCTTGTTTCGTC	6813	False	NA	10	True	AGTAAA	-12	NA	115714887	115746576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
ENSMUSG00000020782.19_3	chr11	+	3460	25	NIC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	4	-28	combination_of_known_junctions	FALSE	canonical	3	54	junction_22	172.677761668954	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACACCTTGTTTCGTC	6813	False	NA	10	True	AGTAAA	-12	NA	115714887	115746576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745888_115745932_115746017_115746080_115746291
ENSMUSG00000020782.19_4	chr11	+	3511	26	NNC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	4	-28	at_least_one_novel_splicesite	FALSE	canonical	3	107	junction_23	160.438568929045	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACACCTTGTTTCGTC	6813	False	NA	10	True	AGTAAA	-12	NA	115714887	115746576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745885_115745932_115746017_115746080_115746291
ENSMUSG00000020782.19_7	chr11	+	3765	27	NIC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	4	-28	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	202.96016457021	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACACCTTGTTTCGTC	6813	False	NA	10	True	AGTAAA	-12	NA	115714887	115746576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_115715004_115723487_115723745_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
ENSMUSG00000020783.15_0	chr11	+	2747	13	FSM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	95	9264	5	-9264	multi-exon	FALSE	canonical	3	251	junction_10	28.6544305280857	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGCAAAGAAAGGAGTGTC	NA	False	NA	14	True	AATATA	-19	NA	72938703	72970879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440_72966596_72968680_72968843_72969766
ENSMUSG00000020783.15_1	chr11	+	1986	11	ISM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	95	13034	5	-13034	5prime_fragment	FALSE	canonical	3	251	junction_10	29.380946206683	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTACTTTTCAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	72938703	72967109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440
ENSMUSG00000020785.18_0	chr11	+	3602	17	NNC	ENSMUSG00000020785.18	novel	3424	16	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	7.21543484483091	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTCTTTGTAT	NA	False	NA	NA	False	AATAAA	-19	NA	72909825	72932889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_72909954_72910193_72910339_72916362_72916764_72917410_72917459_72917840_72917895_72918255_72918308_72918517_72918652_72919054_72919092_72919967_72919990_72921628_72921718_72924584_72924785_72927299_72927354_72928020_72928095_72928363_72928452_72928674_72928804_72929237_72929342_72931046
ENSMUSG00000020785.18_11	chr11	+	3040	12	ISM	ENSMUSG00000020785.18	ENSMUST00000092937.13	3424	16	8168	15	626	-4	3prime_fragment	FALSE	canonical	3	17	junction_8	4.85832335123178	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTTTAAAAAAAAAAGTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	72918036	72932884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72918308_72918517_72918652_72919054_72919092_72919967_72919990_72921628_72921718_72924584_72924785_72927299_72927354_72928020_72928095_72928363_72928452_72928674_72928804_72929237_72929342_72931046
ENSMUSG00000020785.18_16	chr11	+	3041	15	ISM	ENSMUSG00000020785.18	ENSMUST00000092937.13	3424	16	6777	15	-765	-4	3prime_fragment	FALSE	canonical	2	17	junction_11	4.63625904789451	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTTTAAAAAAAAAAGTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	72916645	72932884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72916764_72917410_72917459_72917840_72917895_72918255_72918308_72918517_72918652_72919054_72919092_72919967_72919990_72921628_72921718_72924584_72924785_72927299_72927354_72928020_72928095_72928363_72928452_72928674_72928804_72929237_72929342_72931046
ENSMUSG00000020785.18_2	chr11	+	3448	16	FSM	ENSMUSG00000020785.18	ENSMUST00000092937.13	3424	16	-34	10	1	1	multi-exon	FALSE	canonical	2	15	junction_1	5.11815939137846	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTCTTTGTAT	NA	False	NA	NA	False	AATAAA	-19	NA	72909834	72932889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72909954_72916362_72916764_72917410_72917459_72917840_72917895_72918255_72918308_72918517_72918652_72919054_72919092_72919967_72919990_72921628_72921718_72924584_72924785_72927299_72927354_72928020_72928095_72928363_72928452_72928674_72928804_72929237_72929342_72931046
ENSMUSG00000020785.18_7	chr11	+	3692	15	FSM	ENSMUSG00000020785.18	ENSMUST00000155720.2	3717	15	26	-1	-9	1	multi-exon	FALSE	canonical	2	15	junction_1	4.90158241837079	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTCTTTGTAT	NA	False	NA	NA	False	AATAAA	-19	NA	72909859	72932889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72909954_72916362_72916764_72917410_72917459_72917840_72917895_72918255_72918308_72918517_72918652_72919054_72919092_72919967_72919990_72921628_72921718_72924584_72924785_72927299_72927354_72928020_72928452_72928674_72928804_72929237_72929342_72931046
ENSMUSG00000020787.15_0	chr11	+	2482	12	FSM	ENSMUSG00000020787.15	ENSMUST00000021141.14	2486	12	-21	25	-21	-22	multi-exon	FALSE	canonical	0	0	junction_5	1.11340442853781	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACACAATAAAAAGAATGAGG	8116	False	NA	NA	False	NA	NA	NA	72889907	72906001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72890278_72898927_72899076_72899292_72899365_72899753_72899824_72900011_72900109_72900411_72900493_72900755_72900898_72903278_72903407_72903733_72903825_72904216_72904283_72904645_72904748_72904886
ENSMUSG00000020788.16_29	chr11	+	3730	15	ISM	ENSMUSG00000020788.16	ENSMUST00000163326.8	4606	22	14072	6	-6856	-6	3prime_fragment	FALSE	canonical	3	16	junction_14	26.1359280434783	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGGAGCTGGTAGTCTTT	NA	False	NA	16	True	AATAAA	-16	NA	72866066	72883863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72866477_72867963_72868053_72868170_72868274_72869041_72869174_72869505_72869632_72870952_72871172_72871264_72871601_72872553_72872775_72873449_72873653_72874285_72874372_72878799_72878934_72879288_72879407_72879795_72879914_72880300_72880387_72882514
ENSMUSG00000020788.16_3	chr11	+	4494	21	FSM	ENSMUSG00000020788.16	ENSMUST00000108485.9	4520	21	20	6	20	-6	multi-exon	FALSE	canonical	3	12	junction_20	24.9797918325994	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGGAGCTGGTAGTCTTT	NA	False	NA	16	True	AATAAA	-16	NA	72852014	72883863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72852298_72861421_72861440_72861673_72861757_72862970_72863076_72863228_72863368_72863647_72863729_72863819_72863906_72866011_72866477_72867963_72868053_72868170_72868274_72869041_72869174_72869505_72869632_72870952_72871172_72871264_72871601_72872553_72872775_72873449_72873653_72874285_72874372_72878799_72878934_72879288_72879407_72879795_72879914_72882514
ENSMUSG00000020788.16_30	chr11	+	3643	14	ISM	ENSMUSG00000020788.16	ENSMUST00000108485.9	4520	21	14074	5	-6854	-5	3prime_fragment	FALSE	canonical	3	12	junction_13	28.0287257551181	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGCTGGTAGTCTTTT	NA	False	NA	17	True	AATAAA	-17	NA	72866068	72883864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72866477_72867963_72868053_72868170_72868274_72869041_72869174_72869505_72869632_72870952_72871172_72871264_72871601_72872553_72872775_72873449_72873653_72874285_72874372_72878799_72878934_72879288_72879407_72879795_72879914_72882514
ENSMUSG00000020788.16_31	chr11	+	3707	15	ISM	ENSMUSG00000020788.16	ENSMUST00000021142.8	4593	22	14083	5	-6845	-5	3prime_fragment	FALSE	canonical	3	82	junction_14	12.4533824599535	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGCTGGTAGTCTTTT	NA	False	NA	17	True	AATAAA	-17	NA	72866077	72883864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72866477_72867963_72868053_72868170_72868274_72869041_72869174_72869505_72869632_72870952_72871172_72871264_72871601_72872553_72872775_72873449_72873653_72874285_72874372_72878799_72878934_72879288_72879407_72879795_72879914_72880300_72880374_72882514
ENSMUSG00000020788.16_4	chr11	+	4563	22	FSM	ENSMUSG00000020788.16	ENSMUST00000021142.8	4593	22	24	6	24	-6	multi-exon	FALSE	canonical	3	72	junction_1	15.8513502933488	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGGAGCTGGTAGTCTTT	NA	False	NA	16	True	AATAAA	-16	NA	72852018	72883863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72852298_72861421_72861440_72861673_72861757_72862970_72863076_72863228_72863368_72863647_72863729_72863819_72863906_72866011_72866477_72867963_72868053_72868170_72868274_72869041_72869174_72869505_72869632_72870952_72871172_72871264_72871601_72872553_72872775_72873449_72873653_72874285_72874372_72878799_72878934_72879288_72879407_72879795_72879914_72880300_72880374_72882514
ENSMUSG00000020788.16_47	chr11	+	1105	1	ISM	ENSMUSG00000020788.16	ENSMUST00000163326.8	4606	22	30765	5	9837	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGCTGGTAGTCTTTT	968	False	NA	17	True	AATAAA	-17	NA	72882759	72883864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72882800_72883900
ENSMUSG00000020788.16_5	chr11	+	4582	22	FSM	ENSMUSG00000020788.16	ENSMUST00000163326.8	4606	22	19	5	19	-5	multi-exon	FALSE	canonical	3	16	junction_21	23.72461048905	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGCTGGTAGTCTTTT	NA	False	NA	17	True	AATAAA	-17	NA	72852013	72883864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72852298_72861421_72861440_72861673_72861757_72862970_72863076_72863228_72863368_72863647_72863729_72863819_72863906_72866011_72866477_72867963_72868053_72868170_72868274_72869041_72869174_72869505_72869632_72870952_72871172_72871264_72871601_72872553_72872775_72873449_72873653_72874285_72874372_72878799_72878934_72879288_72879407_72879795_72879914_72880300_72880387_72882514
ENSMUSG00000020790.15_1	chr11	+	7095	25	FSM	ENSMUSG00000020790.15	ENSMUST00000155998.2	8030	25	2	933	2	-8	multi-exon	FALSE	canonical	0	0	junction_4	42.0138659320415	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTGTAAATTTAAAGTG	NA	False	NA	8	True	AATAAA	-9	NA	72580833	72662039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72580861_72602982_72603176_72605190_72605310_72613453_72613590_72619586_72619711_72621297_72621448_72623073_72623240_72629077_72629283_72630814_72630884_72631227_72631428_72637681_72637780_72640125_72640355_72640905_72641005_72641226_72641381_72642890_72643060_72644425_72644545_72645162_72645320_72646515_72646717_72648118_72648296_72649278_72649427_72650741_72650833_72651065_72651191_72652188_72652336_72655602_72655694_72658338
ENSMUSG00000020790.15_29	chr11	+	7070	24	ISM	ENSMUSG00000020790.15	ENSMUST00000155998.2	8030	25	22149	933	-2	-8	3prime_fragment	FALSE	canonical	0	0	junction_3	42.5364071793539	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTGTAAATTTAAAGTG	NA	False	NA	8	True	AATAAA	-9	NA	72602980	72662039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72603176_72605190_72605310_72613453_72613590_72619586_72619711_72621297_72621448_72623073_72623240_72629077_72629283_72630814_72630884_72631227_72631428_72637681_72637780_72640125_72640355_72640905_72641005_72641226_72641381_72642890_72643060_72644425_72644545_72645162_72645320_72646515_72646717_72648118_72648296_72649278_72649427_72650741_72650833_72651065_72651191_72652188_72652336_72655602_72655694_72658338
ENSMUSG00000020790.15_52	chr11	+	2918	1	ISM	ENSMUSG00000020790.15	ENSMUST00000127610.8	7154	25	78298	0	3837	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTAAAGTGTAAACTTT	NA	False	NA	16	True	AATAAA	-17	NA	72659129	72662047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72659100_72662000
ENSMUSG00000020790.15_7	chr11	+	6967	24	NIC	ENSMUSG00000020790.15	novel	7154	25	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	78	junction_3	29.9114003593208	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTAAAGTGTAAACTTT	NA	False	NA	16	True	AATAAA	-17	NA	72580833	72662047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_72580861_72602982_72603176_72605190_72605310_72619586_72619711_72621297_72621448_72623073_72623240_72629077_72629283_72630814_72630884_72631227_72631428_72637681_72637780_72640125_72640355_72640905_72641005_72641226_72641381_72642890_72643060_72644425_72644545_72645162_72645320_72646515_72646717_72648118_72648296_72649278_72649427_72650741_72650833_72651065_72651191_72652188_72652336_72655602_72655694_72658338
ENSMUSG00000020792.16_0	chr11	-	2084	18	FSM	ENSMUSG00000020792.16	ENSMUST00000106411.10	3205	18	12	1109	5	-1	multi-exon	FALSE	canonical	3	153	junction_14	26.4175940114993	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCGAGCCGGGTGAGTG	8932	False	NA	-7	True	CATAAA	-14	NA	116197548	116179935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
ENSMUSG00000020792.16_1	chr11	-	2155	19	NIC	ENSMUSG00000020792.16	novel	3449	20	NA	NA	6	2	combination_of_known_junctions	FALSE	canonical	2	4	junction_13	62.4539583499737	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGAGCCGGGTGAGTGTGA	8933	False	NA	-4	True	CATAAA	-17	NA	116197547	116179932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116187555_116187625_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
ENSMUSG00000020792.16_2	chr11	-	2225	20	NIC	ENSMUSG00000020792.16	novel	3449	20	NA	NA	29	2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_13	70.0554983793963	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGAGCCGGGTGAGTGTGA	8956	False	NA	-4	True	CATAAA	-17	NA	116197524	116179932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116187555_116187625_116188396_116188490_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
ENSMUSG00000020792.16_5	chr11	-	2180	19	FSM	ENSMUSG00000020792.16	ENSMUST00000106413.10	3298	19	9	1109	2	-1	multi-exon	FALSE	canonical	2	10	junction_12	61.2926847990569	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCGAGCCGGGTGAGTG	8929	False	NA	-7	True	CATAAA	-14	NA	116197551	116179935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116188396_116188490_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
ENSMUSG00000020793.6_0	chr11	+	1152	2	FSM	ENSMUSG00000020793.6	ENSMUST00000055872.3	1940	2	788	0	241	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACCATTTCATATGCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	116172552	116174764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116172677_116173736
ENSMUSG00000020794.14_0	chr11	+	1955	6	FSM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	-14	1874	-14	-1874	multi-exon	FALSE	canonical	3	783	junction_5	11.0453610171873	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATTGTCAAGTTGTTGG	NA	False	NA	NA	False	AATATA	-11	NA	72498094	72575433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
ENSMUSG00000020794.14_21	chr11	+	2257	1	ISM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	76934	8	76898	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTGTATTATGAGCTATT	NA	False	NA	3	True	AATAAA	-12	NA	72575042	72577299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72575000_72577300
ENSMUSG00000020798.15_8	chr11	-	1696	12	FSM	ENSMUSG00000020798.15	ENSMUST00000092940.13	2080	12	379	5	174	0	multi-exon	TRUE	canonical	0	0	junction_10	5.71210111723818	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGATTTCAGAGCTTCT	294	False	NA	NA	False	ATTAAA	-19	NA	72440953	72388985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_72389301_72390180_72390353_72390463_72390563_72395881_72395948_72420359_72420550_72427353_72427507_72427996_72428146_72429149_72429217_72429860_72430013_72431240_72431378_72436713_72436780_72440823
ENSMUSG00000020799.17_0	chr11	-	982	6	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	4507	-2	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	10.6320270880016	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGTTAGCACAGAGCTCT	NA	False	NA	-3	True	ATTAAA	-15	NA	72247615	72235549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72247574
ENSMUSG00000020799.17_3	chr11	-	1109	6	ISM	ENSMUSG00000020799.17	ENSMUST00000108502.8	1403	8	3636	10	3636	-3	3prime_fragment	FALSE	canonical	3	33	junction_5	9.09065454189081	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTAAGACAAGAGTTAGCAC	NA	False	NA	-11	True	ATTAAA	-7	NA	72248486	72235557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310
ENSMUSG00000020799.17_5	chr11	-	1383	8	FSM	ENSMUSG00000020799.17	ENSMUST00000108503.9	1397	8	10	4	10	3	multi-exon	FALSE	canonical	3	12	junction_6	18.5681315754731	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAGTTAGCACAGAGCT	NA	False	NA	-5	True	ATTAAA	-13	NA	72252689	72235551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310_72248477_72250504_72250712_72252618
ENSMUSG00000020799.17_9	chr11	-	4124	4	NIC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	3636	-3	intron_retention	FALSE	canonical	3	33	junction_3	10.0332779621949	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTAAGACAAGAGTTAGCAC	NA	False	NA	-11	True	ATTAAA	-7	NA	72248486	72235557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_72235798_72236411_72236609_72242653_72246165_72248310
ENSMUSG00000020801.9_0	chr11	-	609	4	FSM	ENSMUSG00000020801.9	ENSMUST00000021157.9	1161	4	550	2	11	-2	multi-exon	FALSE	canonical	3	203	junction_2	14.0079342596338	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAGGATTGCTCCACTTT	NA	False	NA	-7	True	AATAAA	-13	NA	72105868	72102551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_72102904_72104602_72104700_72104963_72105042_72105786
ENSMUSG00000020801.9_2	chr11	-	2274	3	FSM	ENSMUSG00000020801.9	ENSMUST00000129264.2	837	3	45	-1482	45	-2	multi-exon	FALSE	canonical	3	203	junction_1	10.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAGGATTGCTCCACTTT	NA	False	NA	-7	True	AATAAA	-13	NA	72105834	72102551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_72104700_72104963_72105042_72105786
ENSMUSG00000020802.9_0	chr11	-	5215	18	FSM	ENSMUSG00000020802.9	ENSMUST00000082152.5	5205	18	-32	22	-32	-22	multi-exon	FALSE	canonical	2	105	junction_3	24.8790847526891	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTTTTTTTTAACTTG	7433	False	NA	-21	True	TATAAA	-13	NA	116472305	116428587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116430538_116430624_116430683_116430757_116430962_116431912_116432050_116432164_116432865_116433616_116433707_116434233_116434363_116434445_116434559_116434691_116434847_116435173_116435647_116435871_116436023_116436150_116436261_116436659_116436804_116437286_116437351_116437696_116437795_116439595_116439707_116439859_116439920_116471837
ENSMUSG00000020802.9_2	chr11	-	5160	18	NNC	ENSMUSG00000020802.9	novel	5205	18	NA	NA	-38	-8	at_least_one_novel_splicesite	FALSE	canonical	2	23	junction_10	40.7732356749479	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCATTTTTTTGGGGG	7427	False	NA	-7	True	ATTAAA	-11	NA	116472311	116428573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_116430538_116430624_116430683_116430757_116430962_116431912_116432050_116432164_116432865_116433616_116433707_116434233_116434363_116434445_116434559_116434691_116434847_116435173_116435647_116435946_116436023_116436150_116436261_116436659_116436804_116437286_116437351_116437696_116437795_116439595_116439707_116439859_116439920_116471837
ENSMUSG00000020802.9_3	chr11	-	2770	5	ISM	ENSMUSG00000020802.9	ENSMUST00000134102.2	3550	9	2259	21	2259	-21	3prime_fragment	FALSE	canonical	2	105	junction_3	40.1520547419432	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTTTTTTTTAACTTGC	1223	False	NA	-20	True	TATAAA	-14	NA	116432584	116428586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116430538_116430624_116430683_116430757_116430962_116431912_116432050_116432164
ENSMUSG00000020802.9_6	chr11	-	1669	1	ISM	ENSMUSG00000020802.9	ENSMUST00000134102.2	3550	9	4586	23	4586	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTTTTTTTTTAACTT	3550	False	NA	-22	True	TATAAA	-12	NA	116430257	116428588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116428600_116430300
ENSMUSG00000020802.9_9	chr11	-	3827	10	ISM	ENSMUSG00000020802.9	ENSMUST00000082152.5	5205	18	36810	21	-620	-21	3prime_fragment	FALSE	canonical	2	105	junction_3	27.5873472518664	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTTTTTTTTAACTTGC	NA	False	NA	-20	True	TATAAA	-14	NA	116435463	116428586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116430538_116430624_116430683_116430757_116430962_116431912_116432050_116432164_116432865_116433616_116433707_116434233_116434363_116434445_116434559_116434691_116434847_116435173
ENSMUSG00000020803.4_0	chr11	+	720	4	FSM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	24	237	24	-237	multi-exon	FALSE	canonical	3	1302	junction_3	85.4959388249264	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACAAACCATTAAGTTT	NA	False	NA	7	True	AATAAA	-7	NA	72098396	72100604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72098595_72099078_72099161_72099555_72099632_72100240
ENSMUSG00000020803.4_1	chr11	+	648	3	NIC	ENSMUSG00000020803.4	novel	981	4	NA	NA	20	-237	combination_of_known_splicesites	FALSE	canonical	3	23	junction_2	739	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACAAACCATTAAGTTT	NA	False	NA	7	True	AATAAA	-7	NA	72098392	72100604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_72098595_72099078_72099161_72100240
ENSMUSG00000020805.15_0	chr11	-	3157	11	NIC	ENSMUSG00000020805.15	novel	3329	12	NA	NA	-17	-6	combination_of_known_splicesites	FALSE	canonical	1	2	junction_9	16.135674761224	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCTGGGTGCCTGGCCT	NA	False	NA	-6	True	AATAAA	-17	NA	72157456	72132820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020_72151209_72152848_72152978_72157289
ENSMUSG00000020805.15_1	chr11	-	3513	13	NIC	ENSMUSG00000020805.15	novel	3329	12	NA	NA	12	-6	combination_of_known_junctions	FALSE	canonical	3	8	junction_12	13.363247692417	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCTGGGTGCCTGGCCT	NA	False	NA	-6	True	AATAAA	-17	NA	72158036	72132820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020_72151209_72152438_72152576_72152848_72152978_72157289_72157411_72157771
ENSMUSG00000020805.15_12	chr11	-	1831	3	ISM	ENSMUSG00000020805.15	ENSMUST00000021161.14	3329	12	18941	7	18875	-7	3prime_fragment	FALSE	canonical	3	36	junction_1	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTCCTGGGTGCCTGGCC	NA	False	NA	-7	True	AATAAA	-16	NA	72138544	72132821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72134463_72135951_72136090_72138492
ENSMUSG00000020805.15_2	chr11	-	1748	2	ISM	ENSMUSG00000020805.15	ENSMUST00000021161.14	3329	12	21429	5	21363	-5	3prime_fragment	FALSE	canonical	3	36	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGTGCCTGGCCTT	NA	False	NA	-5	True	AATAAA	-18	NA	72136056	72132819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72134463_72135951
ENSMUSG00000020805.15_3	chr11	-	3294	12	FSM	ENSMUSG00000020805.15	ENSMUST00000021161.14	3329	12	29	6	-17	-6	multi-exon	FALSE	canonical	3	36	junction_1	6.58196885814471	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCTGGGTGCCTGGCCT	NA	False	NA	-6	True	AATAAA	-17	NA	72157456	72132820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020_72151209_72152438_72152576_72152848_72152978_72157289
ENSMUSG00000020805.15_4	chr11	-	2561	8	ISM	ENSMUSG00000020805.15	ENSMUST00000021161.14	3329	12	7645	6	7579	-6	3prime_fragment	FALSE	canonical	3	36	junction_1	7.01019665507731	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCTGGGTGCCTGGCCT	NA	False	NA	-6	True	AATAAA	-17	NA	72149840	72132820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783
ENSMUSG00000020805.15_6	chr11	-	2407	7	ISM	ENSMUSG00000020805.15	ENSMUST00000021161.14	3329	12	9274	6	9208	-6	3prime_fragment	FALSE	canonical	3	36	junction_1	7.57187779440036	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCTGGGTGCCTGGCCT	NA	False	NA	-6	True	AATAAA	-17	NA	72148211	72132820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185
ENSMUSG00000020805.15_7	chr11	-	2773	9	ISM	ENSMUSG00000020805.15	ENSMUST00000021161.14	3329	12	6365	6	6299	-6	3prime_fragment	FALSE	canonical	3	36	junction_1	7.66485485837795	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCTGGGTGCCTGGCCT	NA	False	NA	-6	True	AATAAA	-17	NA	72151120	72132820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020
ENSMUSG00000020805.15_9	chr11	-	1175	1	ISM	ENSMUSG00000020805.15	ENSMUST00000021161.14	3329	12	23490	6	23424	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCTGGGTGCCTGGCCT	2003	False	NA	-6	True	AATAAA	-17	NA	72133995	72132820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72132800_72134000
ENSMUSG00000020806.16_0	chr11	-	3650	19	FSM	ENSMUSG00000020806.16	ENSMUST00000103029.10	3593	19	-62	5	-15	-1	multi-exon	FALSE	canonical	2	65	junction_12	15.7409586041568	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATGCTGCCTTTTGCCT	NA	False	NA	-20	True	ATTAAA	-14	NA	116515088	116488995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116490265_116490886_116491041_116491223_116491325_116491435_116491512_116491720_116491816_116491911_116491976_116492110_116492218_116492419_116492582_116492714_116492790_116493014_116493127_116494478_116494680_116494757_116494877_116495203_116495333_116495786_116495991_116496068_116496265_116496933_116497059_116498053_116498254_116501129_116501306_116515003
ENSMUSG00000020806.16_16	chr11	-	3028	15	ISM	ENSMUSG00000020806.16	ENSMUST00000103029.10	3593	19	18799	4	-2806	0	3prime_fragment	FALSE	canonical	2	65	junction_12	17.0361260806773	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGCTGCCTTTTGCCTT	NA	False	NA	-19	True	ATTAAA	-15	NA	116496227	116488994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116490265_116490886_116491041_116491223_116491325_116491435_116491512_116491720_116491816_116491911_116491976_116492110_116492218_116492419_116492582_116492714_116492790_116493014_116493127_116494478_116494680_116494757_116494877_116495203_116495333_116495786_116495991_116496068
ENSMUSG00000020806.16_19	chr11	-	931	1	ISM	ENSMUSG00000020806.16	ENSMUST00000103029.10	3593	19	25101	4	3496	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGCTGCCTTTTGCCTT	4692	False	NA	-19	True	ATTAAA	-15	NA	116489925	116488994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116489000_116489900
ENSMUSG00000020806.16_9	chr11	-	3502	18	NIC	ENSMUSG00000020806.16	novel	3593	19	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	29.3256386048927	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGCTGCCTTTTGCCTT	NA	False	NA	-19	True	ATTAAA	-15	NA	116515093	116488994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116490265_116491223_116491325_116491435_116491512_116491720_116491816_116491911_116491976_116492110_116492218_116492419_116492582_116492714_116492790_116493014_116493127_116494478_116494680_116494757_116494877_116495203_116495333_116495786_116495991_116496068_116496265_116496933_116497059_116498053_116498254_116501129_116501306_116515003
ENSMUSG00000020807.16_1	chr11	-	4160	18	NIC	ENSMUSG00000020807.16	novel	4653	20	NA	NA	64	1	intron_retention	FALSE	canonical	0	0	junction_11	9.83708117735975	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTAGAGTATTGTACTAA	NA	False	NA	NA	False	AAAAAG	-34	NA	72093374	72044753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_72046265_72049617_72049843_72050225_72050347_72056342_72056425_72057463_72057650_72059541_72059629_72060606_72060686_72066028_72066119_72066312_72066403_72067486_72067607_72069230_72069398_72080373_72080585_72082103_72082171_72082244_72082461_72085385_72085449_72086608_72086716_72089188_72089790_72093237
ENSMUSG00000020807.16_12	chr11	-	4382	19	NNC	ENSMUSG00000020807.16	novel	4390	19	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_18	6.14159065735165	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGTCTATTTGAAGTAA	NA	False	NA	-2	True	AATAAA	-20	NA	72098255	72044924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_72046265_72049617_72049843_72050225_72050347_72056342_72056425_72057463_72057650_72059541_72059629_72060606_72060686_72066028_72066119_72066312_72066403_72067486_72067607_72069230_72069398_72071228_72071453_72080373_72080585_72082244_72082461_72085385_72085449_72086608_72086716_72089188_72089790_72093237_72093377_72098021
ENSMUSG00000020807.16_2	chr11	-	1017	1	ISM	ENSMUSG00000020807.16	ENSMUST00000142530.8	4653	20	52344	170	188	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGTCTATTTGAAGTAA	NA	False	NA	-2	True	AATAAA	-20	NA	72045941	72044924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72044900_72045900
ENSMUSG00000020807.16_22	chr11	-	4381	19	FSM	ENSMUSG00000020807.16	ENSMUST00000238653.2	4390	19	5	4	5	-4	multi-exon	FALSE	canonical	3	10	junction_18	5.57025832235613	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACATGTCTATTTGAAGT	NA	False	NA	-4	True	AATAAA	-18	NA	72098252	72044926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_72046265_72049617_72049843_72050225_72050347_72056342_72056425_72057463_72057650_72059541_72059629_72060606_72060686_72066028_72066119_72066312_72066403_72067486_72067607_72069230_72069398_72071228_72071453_72080373_72080585_72082244_72082461_72085385_72085449_72086608_72086716_72089188_72089790_72093237_72093381_72098021
ENSMUSG00000020807.16_8	chr11	-	2551	10	ISM	ENSMUSG00000107877.3	ENSMUST00000108506.10	4332	19	26629	-167	26629	167	3prime_fragment	FALSE	canonical	3	13	junction_9	5.84575397242929	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATACTAGAGTATTGTACT	NA	False	NA	NA	False	AAAAAG	-32	NA	72067568	72044755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72046265_72049617_72049843_72050225_72050347_72056342_72056425_72057463_72057650_72059541_72059629_72060606_72060686_72066028_72066119_72066312_72066403_72067486
ENSMUSG00000020808.4_0	chr11	+	1484	6	FSM	ENSMUSG00000020808.4	ENSMUST00000021164.4	1513	6	24	5	-23	-5	multi-exon	FALSE	canonical	0	0	junction_3	92.1316449435263	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTGGCATGTTTTTAGA	NA	False	NA	9	True	AATAAA	-13	NA	71933304	71938191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937512
ENSMUSG00000020808.4_14	chr11	+	3559	4	NIC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	12	-5	intron_retention	TRUE	canonical	3	210	junction_3	16.2138486760204	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTGGCATGTTTTTAGA	NA	False	NA	9	True	AATAAA	-13	NA	71933292	71938191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_71933361_71933842_71936601_71937165_71937220_71937512
ENSMUSG00000020808.4_5	chr11	+	4020	3	NIC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	-14	-5	intron_retention	FALSE	canonical	3	210	junction_2	19	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTGGCATGTTTTTAGA	NA	False	NA	9	True	AATAAA	-13	NA	71933313	71938191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_71936601_71937165_71937220_71937512
ENSMUSG00000020808.4_6	chr11	+	1905	5	NIC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	23	-5	intron_retention	FALSE	canonical	3	210	junction_4	14.6116391962025	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTGGCATGTTTTTAGA	NA	False	NA	9	True	AATAAA	-13	NA	71933303	71938191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_71933361_71933842_71934164_71935806_71936601_71937165_71937220_71937512
ENSMUSG00000020811.17_0	chr11	+	1629	2	ISM	ENSMUSG00000020811.17	ENSMUST00000108511.8	2866	9	12	28679	12	0	5prime_fragment	FALSE	canonical	3	14	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCGCTTTGTTGTGAAG	NA	False	NA	NA	False	AGTAAA	-16	NA	71641817	71651794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_71642056_71650403
ENSMUSG00000020811.17_1	chr11	+	2829	9	FSM	ENSMUSG00000020811.17	ENSMUST00000108511.8	2866	9	32	5	32	-5	multi-exon	FALSE	canonical	3	7	junction_4	2.29128784747792	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACACTGTGTCTCTGCC	NA	False	NA	14	True	CATAAA	-27	NA	71641837	71680468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_71642056_71650403_71651093_71657614_71657730_71659454_71659640_71662678_71662801_71674083_71674244_71675094_71675260_71678543_71678745_71679494
ENSMUSG00000020811.17_2	chr11	+	2346	8	ISM	ENSMUSG00000020811.17	ENSMUST00000108510.2	2956	9	8469	3	8469	-3	3prime_fragment	FALSE	canonical	3	7	junction_3	1.64130361329658	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACTGTGTCTCTGCCTC	NA	False	NA	16	True	CATAAA	-29	NA	71650670	71680470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_71651093_71657614_71657730_71659454_71659640_71662678_71662801_71674083_71674244_71675094_71675260_71678543_71678745_71679494
ENSMUSG00000020811.17_3	chr11	+	1270	3	ISM	ENSMUSG00000020811.17	ENSMUST00000108510.2	2956	9	32965	3	15665	-3	3prime_fragment	FALSE	canonical	3	9	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACTGTGTCTCTGCCTC	NA	False	NA	16	True	CATAAA	-29	NA	71675166	71680470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_71675260_71678543_71678745_71679494
ENSMUSG00000020812.19_0	chr11	+	1981	5	FSM	ENSMUSG00000020812.19	ENSMUST00000106378.8	1988	5	5	2	-1	1	multi-exon	FALSE	canonical	3	135	junction_1	18.9340962287615	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGTAGCATTGTGGGT	NA	False	NA	1	True	AATAAA	-14	NA	116562499	116566622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125
ENSMUSG00000020812.19_1	chr11	+	853	6	FSM	ENSMUSG00000020812.19	ENSMUST00000139934.8	865	6	10	2	1	1	multi-exon	FALSE	canonical	3	112	junction_5	27.7632851082144	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGTAGCATTGTGGGT	NA	False	NA	1	True	AATAAA	-14	NA	116562495	116566622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
ENSMUSG00000020812.19_10	chr11	+	866	6	FSM	ENSMUSG00000020812.19	ENSMUST00000239281.2	857	6	-19	10	0	-4	multi-exon	FALSE	canonical	3	20	junction_5	61.1901952930369	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTAACTTGGTAGCAT	NA	False	NA	-6	True	AATAAA	-7	NA	116562494	116566615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566314
ENSMUSG00000020812.19_12	chr11	+	661	5	FSM	ENSMUSG00000020812.19	ENSMUST00000239226.2	1257	5	594	2	220	1	multi-exon	FALSE	canonical	3	112	junction_4	28.7347785792757	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGTAGCATTGTGGGT	NA	False	NA	1	True	AATAAA	-14	NA	116563094	116566622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
ENSMUSG00000020812.19_13	chr11	+	495	3	ISM	ENSMUSG00000020812.19	ENSMUST00000239362.2	524	4	1025	-3	1025	1	3prime_fragment	FALSE	canonical	3	112	junction_2	35	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGTAGCATTGTGGGT	NA	False	NA	1	True	AATAAA	-14	NA	116564767	116566622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_116564898_116565125_116565202_116566333
ENSMUSG00000020812.19_16	chr11	+	1194	1	FSM	ENSMUSG00000065094.3	ENSMUST00000083160.3	74	1	5	-1125	5	1125	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGTAGCATTGTGGGT	NA	False	NA	1	True	AATAAA	-14	NA	116565428	116566622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116565400_116566600
ENSMUSG00000020812.19_20	chr11	+	2694	3	ISM	ENSMUSG00000020812.19	ENSMUST00000239363.2	1631	4	65	4	0	-4	intron_retention	FALSE	canonical	3	180	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTAACTTGGTAGCAT	NA	False	NA	-6	True	AATAAA	-7	NA	116562494	116566615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_116563565_116564763_116564898_116565125
ENSMUSG00000020812.19_3	chr11	+	727	4	FSM	ENSMUSG00000020812.19	ENSMUST00000239363.2	1631	4	907	-3	-137	1	multi-exon	FALSE	canonical	3	112	junction_3	32.5371582450998	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGTAGCATTGTGGGT	NA	False	NA	1	True	AATAAA	-14	NA	116563336	116566622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116563565_116564763_116564898_116565125_116565202_116566333
ENSMUSG00000020812.19_6	chr11	+	2214	4	FSM	ENSMUSG00000020812.19_ENSMUSG00000065094.3	ENSMUST00000144049.8	966	4	-39	-1209	0	1	multi-exon	FALSE	canonical	3	135	junction_1	19.4422220952236	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGTAGCATTGTGGGT	NA	False	NA	1	True	AATAAA	-14	NA	116562494	116566622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763
ENSMUSG00000020812.19_8	chr11	+	2296	4	ISM	ENSMUSG00000020812.19	ENSMUST00000153405.3	1151	5	-10	-3	-2	1	intron_retention	FALSE	canonical	3	135	junction_1	21.6999743983464	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGTAGCATTGTGGGT	NA	False	NA	1	True	AATAAA	-14	NA	116562492	116566622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_116562583_116562989_116563565_116564763_116564898_116565125
ENSMUSG00000020812.19_9	chr11	+	2383	4	ISM	ENSMUSG00000020812.19	ENSMUST00000239226.2	1257	5	4	2	2	1	intron_retention	FALSE	canonical	3	171	junction_1	4.78423336480244	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGTAGCATTGTGGGT	NA	False	NA	1	True	AATAAA	-14	NA	116562504	116566622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_116563182_116563489_116563565_116564763_116564898_116565125
ENSMUSG00000020814.14_0	chr11	-	1559	5	NNC	ENSMUSG00000020814.14	novel	2063	4	NA	NA	10	-340	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	51.492717931762	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACGTAGCTCGAAATATGG	6336	False	NA	-12	True	AATAAA	-16	NA	116718862	116694227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_116694930_116695083_116695481_116702748_116702843_116707010_116707069_116718554
ENSMUSG00000020814.14_1	chr11	-	1723	4	FSM	ENSMUSG00000020814.14	ENSMUST00000021170.9	2063	4	0	340	0	-340	multi-exon	FALSE	canonical	3	89	junction_1	18.006171781426	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACGTAGCTCGAAATATGG	6326	False	NA	-12	True	AATAAA	-16	NA	116718872	116694227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116695481_116702748_116702843_116707010_116707069_116718554
ENSMUSG00000020814.14_4	chr11	-	1876	4	NIC	ENSMUSG00000020814.14	novel	757	5	NA	NA	-9	1157	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	49.5468353064945	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACCGTGTGTTTCTTCAG	6317	False	NA	NA	False	AATAAA	-20	NA	116718881	116697397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116698795_116702748_116702843_116707010_116707069_116718554
ENSMUSG00000020817.17_0	chr11	+	5207	18	FSM	ENSMUSG00000020817.17	ENSMUST00000076270.13	5408	18	-5	206	-5	-206	multi-exon	TRUE	canonical	3	115	junction_10	23.0000752217816	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGAGTGTGTGGCCTT	NA	False	NA	11	True	ATTAAA	-12	NA	70735598	70833725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394_70784515_70791297_70791434_70795430_70795610_70799211_70799344_70808140_70808609_70810002_70810108_70811677_70811795_70813968_70814068_70816597_70816739_70825230_70825421_70825952_70826009_70828349_70828449_70830705_70830823_70831207
ENSMUSG00000020817.17_36	chr11	+	2075	1	ISM	ENSMUSG00000020817.17	ENSMUST00000076270.13	5408	18	96049	204	95852	-204	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGAGTGTGTGGCCTTTT	NA	False	NA	13	True	ATTAAA	-14	NA	70831652	70833727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_70831700_70833700
ENSMUSG00000020817.17_4	chr11	+	5101	17	NIC	ENSMUSG00000020817.17	novel	5408	18	NA	NA	-4	-206	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	40.6215383140521	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGAGTGTGTGGCCTT	NA	False	NA	11	True	ATTAAA	-12	NA	70735599	70833725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394_70784515_70791297_70791434_70795430_70795610_70799211_70799344_70808140_70808609_70811677_70811795_70813968_70814068_70816597_70816739_70825230_70825421_70825952_70826009_70828349_70828449_70830705_70830823_70831207
ENSMUSG00000020817.17_6	chr11	+	1285	5	FSM	ENSMUSG00000020817.17	ENSMUST00000179114.8	1264	5	-22	1	-8	-1	multi-exon	FALSE	canonical	3	143	junction_4	19.8179211826064	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGGCCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	70735595	70784946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394
ENSMUSG00000020818.17_11	chr11	+	2319	14	NIC	ENSMUSG00000020818.17	novel	2952	14	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	8.80424857096892	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAAGAGTATTTACTGG	NA	False	NA	3	True	AATAAA	-14	NA	116744603	116765536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_116744730_116744825_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
ENSMUSG00000020818.17_29	chr11	+	177	1	ISM	ENSMUSG00000020818.17	ENSMUST00000021173.14	3298	13	21639	0	7091	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116766284	116766461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_116766300_116766500
ENSMUSG00000020818.17_4	chr11	+	2425	13	FSM	ENSMUSG00000020818.17	ENSMUST00000021173.14	3298	13	-53	926	5	-3	multi-exon	TRUE	canonical	3	74	junction_12	6.07076326887045	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAAAGAGTATTTACTG	NA	False	NA	2	True	AATAAA	-13	NA	116744592	116765535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
ENSMUSG00000020821.18_0	chr11	+	4254	23	FSM	ENSMUSG00000020821.18	ENSMUST00000094499.11	5168	23	-47	961	-34	-961	multi-exon	FALSE	canonical	0	0	junction_1	1.80220250923627	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAAACAGCTTGTGGTTG	NA	False	NA	4	True	AATAAA	-4	NA	70591339	70620252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70591536_70593197_70593378_70593597_70593732_70594093_70594171_70594524_70594705_70595283_70595350_70595724_70595904_70595995_70596108_70596506_70596585_70596725_70596792_70596878_70596955_70597506_70597586_70597766_70597913_70599267_70599438_70599604_70599685_70599776_70599853_70608244_70608325_70609824_70609920_70614873_70614958_70615647_70615835_70615929_70616003_70616713_70617329_70619027
ENSMUSG00000020821.18_1	chr11	+	249	1	ISM	ENSMUSG00000020821.18	ENSMUST00000102554.8	6684	23	28688	2480	28586	-903	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGTTTTACTAAGCGCGTC	4167	False	NA	10	True	AGTAAA	-3	NA	70620061	70620310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_70620100_70620300
ENSMUSG00000020823.17_1	chr11	+	4659	16	FSM	ENSMUSG00000020823.17	ENSMUST00000090433.6	4654	16	-11	6	-11	-3	multi-exon	FALSE	canonical	3	319	junction_5	24.9420662068455	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAGAGTGTCCTTTTCT	NA	False	NA	2	True	AATAAA	-12	NA	117006052	117050088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626
ENSMUSG00000020823.17_2	chr11	+	2821	17	FSM	ENSMUSG00000020823.17	ENSMUST00000021177.15	2866	17	43	2	-23	-2	multi-exon	TRUE	canonical	3	28	junction_16	82.8488599423673	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGAGTGTCCTTTTCTT	NA	False	NA	3	True	AATAAA	-13	NA	117006040	117050089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626_117047729_117049579
ENSMUSG00000020823.17_46	chr11	+	1216	1	NIC	ENSMUSG00000020823.17	novel	2866	17	NA	NA	2979	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGAGTGTCCTTTTCTT	NA	False	NA	3	True	AATAAA	-13	NA	117048873	117050089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117048900_117050100
ENSMUSG00000020826.10_1	chr11	+	3904	26	FSM	ENSMUSG00000020826.10	ENSMUST00000214397.3	3456	26	16	-464	16	-38	multi-exon	TRUE	canonical	0	0	junction_4	0.754718490564528	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAATCACCCTGAGTGT	NA	False	NA	NA	False	TATAAA	-10	NA	78816017	78851042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78816133_78819399_78819470_78820576_78820697_78822405_78822555_78826177_78826341_78827228_78827321_78828386_78828529_78828625_78828766_78830804_78830980_78831073_78831176_78835485_78835681_78836057_78836141_78836464_78836610_78836694_78836800_78838672_78838723_78839038_78839214_78839908_78840042_78840439_78840519_78840781_78840964_78841920_78842085_78843628_78843837_78845720_78845809_78846165_78846288_78847321_78847471_78848235_78848431_78850479
ENSMUSG00000020827.19_0	chr11	+	4969	32	FSM	ENSMUSG00000020827.19	ENSMUST00000072873.14	4610	32	-12	-347	-3	-3	multi-exon	FALSE	canonical	3	41	junction_20	18.9436427990342	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCACCATTTTGAGATCCT	1463	False	NA	NA	False	AATAAA	-16	NA	70453703	70505301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494770_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499414_70499526_70499665_70499785_70499991_70500081_70500379_70500544_70500903_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
ENSMUSG00000020827.19_1	chr11	+	4887	32	FSM	ENSMUSG00000020827.19	ENSMUST00000102559.11	4865	32	-26	4	-9	-4	multi-exon	TRUE	canonical	3	21	junction_17	25.4119032798382	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCACCATTTTGAGATCC	1457	False	NA	NA	False	AATAAA	-15	NA	70453697	70505300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494770_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499665_70499785_70499991_70500081_70500233_70500258_70500379_70500544_70500903_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
ENSMUSG00000020827.19_28	chr11	+	4964	32	NIC	ENSMUSG00000020827.19	novel	4994	33	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	2	4	junction_21	23.9682846289448	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACCATTTTGAGATCCTA	1466	False	NA	NA	False	AATAAA	-17	NA	70453706	70505302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494770_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499414_70499526_70499665_70499785_70499991_70500081_70500379_70500544_70500906_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
ENSMUSG00000020827.19_4	chr11	+	4854	31	FSM	ENSMUSG00000020827.19	ENSMUST00000102558.11	3903	31	-185	-766	4	0	multi-exon	FALSE	canonical	3	21	junction_17	21.9476397111145	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATTTTGAGATCCTACT	1470	False	NA	NA	False	AATAAA	-19	NA	70453710	70505304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494770_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499665_70499785_70499991_70500081_70500379_70500544_70500903_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
ENSMUSG00000020827.19_5	chr11	+	4991	33	NIC	ENSMUSG00000020827.19	novel	4994	33	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	25	junction_21	22.8920701335637	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACCATTTTGAGATCCTA	1466	False	NA	NA	False	AATAAA	-17	NA	70453706	70505302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494770_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499414_70499526_70499665_70499785_70499991_70500081_70500233_70500258_70500379_70500544_70500903_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
ENSMUSG00000020828.14_1	chr11	+	3383	25	NIC	ENSMUSG00000020828.14	novel	875	7	NA	NA	112	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	6.19755776271768	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCCTCTTCTTGGAGA	NA	False	NA	2	True	AATAAA	-14	NA	70431001	70448936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70431035_70431670_70431781_70431888_70432020_70432122_70432266_70432640_70432747_70432826_70432893_70433409_70433469_70433586_70433680_70433768_70433922_70434953_70435104_70442005_70442090_70442211_70442291_70443279_70443391_70443523_70443695_70444160_70444288_70444869_70444989_70445102_70445217_70445404_70445510_70445687_70445777_70445876_70445991_70446157_70446208_70446421_70446557_70446733_70446888_70447833_70447949_70448164
ENSMUSG00000020828.14_3	chr11	+	3686	25	FSM	ENSMUSG00000020828.14	ENSMUST00000018429.12	3659	25	-35	8	-35	-8	multi-exon	FALSE	canonical	2	3	junction_10	5.6248456768954	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACGGCCCATGCCTCTT	NA	False	NA	-6	True	AATAAA	-6	NA	70431096	70448928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70431441_70431670_70431781_70431888_70432020_70432122_70432266_70432640_70432747_70432826_70432893_70433409_70433469_70433586_70433680_70433768_70433922_70434953_70435104_70442005_70442090_70442211_70442291_70443279_70443391_70443523_70443695_70444160_70444288_70444869_70444989_70445102_70445217_70445404_70445510_70445687_70445777_70445876_70445991_70446157_70446208_70446421_70446557_70446733_70446888_70447833_70447949_70448164
ENSMUSG00000020828.14_5	chr11	+	3604	24	NIC	ENSMUSG00000020828.14	novel	3659	25	NA	NA	-103	-8	combination_of_known_splicesites	FALSE	canonical	2	6	junction_9	5.25817394108515	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACGGCCCATGCCTCTT	NA	False	NA	-6	True	AATAAA	-6	NA	70431028	70448928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70431441_70431670_70431781_70431888_70432020_70432122_70432266_70432640_70432747_70432826_70432893_70433409_70433469_70433586_70433680_70433768_70433922_70442005_70442090_70442211_70442291_70443279_70443391_70443523_70443695_70444160_70444288_70444869_70444989_70445102_70445217_70445404_70445510_70445687_70445777_70445876_70445991_70446157_70446208_70446421_70446557_70446733_70446888_70447833_70447949_70448164
ENSMUSG00000020828.14_6	chr11	+	3335	24	NIC	ENSMUSG00000020828.14	novel	875	7	NA	NA	4	-6	combination_of_known_splicesites	TRUE	canonical	2	2	junction_1	5.92422216983633	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGGCCCATGCCTCTTCT	NA	False	NA	-4	True	AATAAA	-8	NA	70430893	70448930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70431035_70431670_70431781_70431888_70432020_70432122_70432266_70432640_70432747_70432826_70432893_70433409_70433469_70433586_70433680_70433768_70433922_70442005_70442090_70442211_70442291_70443279_70443391_70443523_70443695_70444160_70444288_70444869_70444989_70445102_70445217_70445404_70445510_70445687_70445777_70445876_70445991_70446157_70446208_70446421_70446557_70446733_70446888_70447833_70447949_70448164
ENSMUSG00000020829.10_0	chr11	+	1949	5	FSM	ENSMUSG00000020829.10	ENSMUST00000001126.4	1978	5	18	11	18	-11	multi-exon	FALSE	canonical	3	60	junction_1	12.7549010188241	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGTTTACTGGGCTTT	8355	False	NA	15	True	AGTAAA	-16	NA	78356540	78362760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78356832_78357176_78358030_78359450_78359535_78361520_78361678_78362196
ENSMUSG00000020829.10_2	chr11	+	5047	2	NIC	ENSMUSG00000020829.10	novel	749	4	NA	NA	628	-2	intron_retention	FALSE	canonical	3	91	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGGGCTTTGGGGCTTTC	9018	False	NA	24	True	AGTAAA	-25	NA	78357203	78362769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_78361678_78362196
ENSMUSG00000020829.10_6	chr11	+	1100	4	FSM	ENSMUSG00000020829.10	ENSMUST00000146431.3	749	4	-37	-314	16	-9	multi-exon	FALSE	canonical	3	25	junction_1	30.8796948747159	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTACTGGGCTTTGG	8353	False	NA	17	True	AGTAAA	-18	NA	78356538	78362762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78356832_78359450_78359535_78361520_78361678_78362196
ENSMUSG00000020831.19_0	chr11	-	855	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108578.9	880	6	23	2	11	0	multi-exon	FALSE	canonical	3	195	junction_1	133.830340356737	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70128717	70126033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUSG00000020831.19_1	chr11	-	730	5	FSM	ENSMUSG00000020831.19	ENSMUST00000021181.13	779	5	46	3	-7	-1	multi-exon	FALSE	canonical	3	264	junction_1	106.829303096107	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACATGGTGCTGCCAGCTG	NA	False	NA	-15	True	ATTAAA	-12	NA	70128694	70126034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70126295_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUSG00000020831.19_10	chr11	-	850	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108576.10	576	6	-79	-195	19	-1	multi-exon	FALSE	canonical	3	107	junction_1	159.443532324143	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACATGGTGCTGCCAGCTG	NA	False	NA	-15	True	ATTAAA	-12	NA	70128709	70126034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70126295_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUSG00000020831.19_13	chr11	-	788	5	NIC	ENSMUSG00000020831.19	novel	880	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	60	junction_1	187.69523169223	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70128728	70126033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_70126291_70126822_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUSG00000020831.19_15	chr11	-	760	5	FSM	ENSMUSG00000020831.19	ENSMUST00000102569.10	778	5	16	2	4	0	multi-exon	FALSE	canonical	3	142	junction_3	164.364495862093	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70128724	70126033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70128356_70128452_70128609
ENSMUSG00000020831.19_2	chr11	-	653	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108579.8	667	4	12	2	10	0	multi-exon	FALSE	canonical	3	142	junction_2	177.768263634304	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70128718	70126033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70126295_70126849_70127038_70128356_70128452_70128609
ENSMUSG00000020831.19_4	chr11	-	794	5	NIC	ENSMUSG00000020831.19	novel	779	5	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	190.587742260619	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACATGGTGCTGCCAGCT	NA	False	NA	-16	True	ATTAAA	-11	NA	70128732	70126035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_70126295_70126822_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUSG00000020831.19_6	chr11	-	756	5	NIC	ENSMUSG00000020831.19	novel	880	6	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	60	junction_1	187.69523169223	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70128723	70126033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_70126291_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUSG00000020832.15_0	chr11	-	1997	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	12	5	12	-5	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATTCTTATCTTTTATT	NA	False	NA	-7	True	AATAAA	-17	NA	77971197	77964206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
ENSMUSG00000020832.15_23	chr11	-	1837	11	NNC	ENSMUSG00000020832.15	novel	2014	10	NA	NA	12	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	61.7643910356121	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTATTCTTATCTTTTAT	NA	False	NA	-8	True	AATAAA	-16	NA	77971197	77964207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_77964218_77964376_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
ENSMUSG00000020834.18_0	chr11	+	1735	5	FSM	ENSMUSG00000020834.18	ENSMUST00000021187.12	1779	5	40	4	-29	-2	multi-exon	FALSE	canonical	3	80	junction_1	5.93190525885234	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATGCTCTGGCTCCCGCC	NA	False	NA	1	True	AATAAA	-13	NA	77923145	77928688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77923325_77923410_77923530_77924838_77924963_77925100_77925413_77927687
ENSMUSG00000020834.18_1	chr11	+	1815	4	FSM	ENSMUSG00000020834.18	ENSMUST00000122342.2	1791	4	-26	2	-23	-2	multi-exon	FALSE	canonical	3	86	junction_3	4.08248290463863	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATGCTCTGGCTCCCGCC	NA	False	NA	1	True	AATAAA	-13	NA	77923151	77928688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77923530_77924838_77924963_77925100_77925413_77927687
ENSMUSG00000020836.16_0	chr11	+	2455	10	NNC	ENSMUSG00000020836.16	novel	1418	10	NA	NA	-65	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.16227766016838	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATCTGGTTTGAAACCGC	4132	False	NA	NA	False	AATAAA	-13	NA	77353405	77361306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_77353581_77354736_77354937_77356491_77356615_77357020_77357151_77357243_77357426_77359091_77359197_77359286_77359433_77359735_77359794_77359882_77360114_77360201
ENSMUSG00000020836.16_1	chr11	+	2504	10	NIC	ENSMUSG00000020836.16	novel	2804	11	NA	NA	-63	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3.01846171271247	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATGCATCTGGTTTGAA	4134	False	NA	NA	False	AATAAA	-8	NA	77353407	77361301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_77353581_77354677_77354937_77356491_77356615_77357020_77357151_77357243_77357426_77359091_77359197_77359286_77359433_77359735_77359794_77359882_77360114_77360204
ENSMUSG00000020836.16_2	chr11	+	2515	10	NIC	ENSMUSG00000020836.16	novel	2804	11	NA	NA	-63	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3.16227766016838	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGTTTGAAACCGCTTT	4134	False	NA	NA	False	AATAAA	-16	NA	77353407	77361309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_77353581_77354677_77354937_77356491_77356615_77357020_77357151_77357243_77357426_77359091_77359197_77359286_77359433_77359735_77359794_77359882_77360114_77360201
ENSMUSG00000020840.11_1	chr11	+	2229	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	263	5	28	-5	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	1051	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGCAAGCCGGCGTGTC	NA	False	NA	25	True	AATAAA	-14	NA	76836592	76878200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
ENSMUSG00000020841.6_0	chr11	-	7945	21	FSM	ENSMUSG00000020841.6	ENSMUST00000021201.6	7946	21	-7	8	-7	-8	multi-exon	FALSE	canonical	3	50	junction_17	8.89719056781409	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATGTTTGTCTTTCTTTG	NA	False	NA	-14	True	TATAAA	-10	NA	76737851	76669257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_76673237_76675212_76675313_76675844_76676031_76677096_76677229_76681652_76681718_76681820_76681917_76682689_76682822_76683561_76683698_76686266_76686463_76688406_76688731_76690614_76690785_76692465_76692609_76693057_76693161_76696801_76696912_76699535_76699704_76702520_76702713_76703207_76703558_76704308_76704479_76705596_76705740_76731213_76731462_76737049
ENSMUSG00000020841.6_1	chr11	-	2464	1	ISM	ENSMUSG00000020841.6	ENSMUST00000021201.6	7946	21	66123	8	10127	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATGTTTGTCTTTCTTTG	NA	False	NA	-14	True	TATAAA	-10	NA	76671721	76669257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_76669300_76671700
ENSMUSG00000020841.6_11	chr11	-	6742	18	ISM	ENSMUSG00000020841.6	ENSMUST00000021201.6	7946	21	33377	7	-4815	-7	3prime_fragment	FALSE	canonical	3	50	junction_17	8.60071615268754	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTTTGTCTTTCTTTGT	NA	False	NA	-13	True	TATAAA	-11	NA	76704467	76669256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_76673237_76675212_76675313_76675844_76676031_76677096_76677229_76681652_76681718_76681820_76681917_76682689_76682822_76683561_76683698_76686266_76686463_76688406_76688731_76690614_76690785_76692465_76692609_76693057_76693161_76696801_76696912_76699535_76699704_76702520_76702713_76703207_76703558_76704308
ENSMUSG00000020841.6_2	chr11	-	6452	17	ISM	ENSMUSG00000020841.6	ENSMUST00000021201.6	7946	21	34412	13	-3780	-13	3prime_fragment	FALSE	canonical	3	52	junction_1	8.01463505095522	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGATGTTTGTCTTT	NA	False	NA	-19	True	TATAAA	-5	NA	76703432	76669262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_76673237_76675212_76675313_76675844_76676031_76677096_76677229_76681652_76681718_76681820_76681917_76682689_76682822_76683561_76683698_76686266_76686463_76688406_76688731_76690614_76690785_76692465_76692609_76693057_76693161_76696801_76696912_76699535_76699704_76702520_76702713_76703207
ENSMUSG00000020841.6_27	chr11	-	4396	4	ISM	ENSMUSG00000020841.6	ENSMUST00000021201.6	7946	21	60617	8	4621	-8	3prime_fragment	FALSE	canonical	3	52	junction_1	6.84754619472471	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATGTTTGTCTTTCTTTG	NA	False	NA	-14	True	TATAAA	-10	NA	76677227	76669257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_76673237_76675212_76675313_76675844_76676031_76677096
ENSMUSG00000020841.6_4	chr11	-	4229	3	ISM	ENSMUSG00000020841.6	ENSMUST00000021201.6	7946	21	61850	8	5854	-8	3prime_fragment	FALSE	canonical	3	52	junction_1	7.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATGTTTGTCTTTCTTTG	NA	False	NA	-14	True	TATAAA	-10	NA	76675994	76669257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_76673237_76675212_76675313_76675844
ENSMUSG00000020843.16_0	chr11	+	995	4	FSM	ENSMUSG00000020843.16	ENSMUST00000120699.8	746	4	-7	-242	-7	242	multi-exon	FALSE	canonical	3	7	junction_1	120.856204731996	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCAGTTAGTATCTTTGC	NA	False	NA	16	True	AGTAAA	-26	NA	76297770	76305397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_76297970_76300467_76300665_76301952_76302026_76304871
ENSMUSG00000020843.16_1	chr11	+	1047	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	47	1723	-1	240	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCAGTTAGTATCTTT	NA	False	NA	14	True	AGTAAA	-24	NA	76298015	76305395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
ENSMUSG00000020843.16_4	chr11	+	1960	3	FSM	ENSMUSG00000020843.16	ENSMUST00000152183.2	362	3	-6	-1592	-6	-618	multi-exon	FALSE	canonical	3	21	junction_1	125	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGGTGTGTATTTATAT	NA	False	NA	NA	False	NA	NA	NA	76298010	76306500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_76298269_76301952_76302026_76304871
ENSMUSG00000020844.7_0	chr11	-	1654	8	NNC	ENSMUSG00000020844.7	novel	2755	8	NA	NA	111695	-762	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_7	33.6961210145704	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCTTACTGTGTGCTTAG	1423	False	NA	-7	True	NA	NA	NA	76178199	76148785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76178098
ENSMUSG00000020844.7_1	chr11	-	1988	8	FSM	ENSMUSG00000020844.7	ENSMUST00000021204.4	2755	8	1	766	1	-766	multi-exon	FALSE	canonical	3	67	junction_7	17.5905818956785	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAACGCTTACTGTGTGC	NA	False	NA	-11	True	NA	NA	NA	76289965	76148789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76289526
ENSMUSG00000020844.7_3	chr11	-	1721	8	NNC	ENSMUSG00000020844.7	novel	2755	8	NA	NA	111691	-766	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	32.3412922387691	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAACGCTTACTGTGTGC	1419	False	NA	-11	True	NA	NA	NA	76178203	76148789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76178031
ENSMUSG00000020846.7_0	chr11	-	3483	3	FSM	ENSMUSG00000020846.7	ENSMUST00000021207.7	3512	3	20	9	20	-9	multi-exon	FALSE	canonical	3	32	junction_2	0.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATAAAGCCCGGGAATG	7907	False	NA	NA	False	AATAAA	-8	NA	75918588	75910028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_75913067_75915773_75915884_75918253
ENSMUSG00000020846.7_1	chr11	-	1897	1	ISM	ENSMUSG00000020846.7	ENSMUST00000021207.7	3512	3	6683	9	6683	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATAAAGCCCGGGAATG	NA	False	NA	NA	False	AATAAA	-8	NA	75911925	75910028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_75910000_75911900
ENSMUSG00000020847.16_0	chr11	-	2116	8	FSM	ENSMUSG00000020847.16	ENSMUST00000066504.11	988	8	0	-1128	0	-10	multi-exon	FALSE	canonical	3	14	junction_1	2.29462548631557	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGATAGACTGGGCGC	NA	False	NA	-20	True	AATAAA	-14	NA	75801888	75721834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_75723041_75724227_75724375_75725588_75725703_75745129_75745305_75769774_75769862_75797343_75797474_75799736_75799881_75801775
ENSMUSG00000020847.16_4	chr11	-	1060	4	ISM	ENSMUSG00000020847.16	ENSMUST00000066504.11	988	8	56617	-579	56617	-559	3prime_fragment	FALSE	canonical	3	14	junction_1	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAAGGCTCCCACCCTG	6654	False	NA	NA	False	ATTAAA	-22	NA	75745271	75722383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_75723041_75724227_75724375_75725588_75725703_75745129
ENSMUSG00000020849.14_0	chr11	+	1777	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	52	271	8	-271	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	9430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATATATCATGCCTCCAT	3043	False	NA	12	True	NA	NA	NA	75623746	75656400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
ENSMUSG00000020850.15_0	chr11	+	7420	42	FSM	ENSMUSG00000020850.15	ENSMUST00000018449.11	7442	42	18	4	14	-4	multi-exon	FALSE	canonical	3	217	junction_5	157.019499238112	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCTTTTGTTTTCTTGCT	NA	False	NA	14	True	AATAAA	-11	NA	75377659	75400269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75378018_75378450_75378620_75380567_75380733_75380823_75381043_75381154_75381368_75381466_75381593_75381672_75381779_75382268_75382460_75382584_75382705_75382787_75382978_75383088_75383209_75383322_75383458_75383804_75383935_75384176_75384374_75384639_75384847_75384963_75385128_75385253_75385381_75385499_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_45	chr11	+	5112	29	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	6597	6	1171	-4	3prime_fragment	FALSE	canonical	3	289	junction_2	135.218738135131	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCTTTTGTTTTCTTGCT	NA	False	NA	14	True	AATAAA	-11	NA	75384242	75400269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75384374_75384639_75384847_75384963_75385128_75385253_75385381_75385499_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_48	chr11	+	4889	28	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	7086	6	1660	-4	3prime_fragment	FALSE	canonical	3	289	junction_1	132.920977586605	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCTTTTGTTTTCTTGCT	NA	False	NA	14	True	AATAAA	-11	NA	75384731	75400269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75384847_75384963_75385128_75385253_75385381_75385499_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_52	chr11	+	4573	26	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	7647	4	2221	-2	3prime_fragment	FALSE	canonical	3	297	junction_2	126.460074331783	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTGTTTTCTTGCTGT	NA	False	NA	16	True	AATAAA	-13	NA	75385292	75400271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75385381_75385499_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_53	chr11	+	4428	25	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	7909	6	2483	-4	3prime_fragment	FALSE	canonical	3	297	junction_1	122.890957763377	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCTTTTGTTTTCTTGCT	NA	False	NA	14	True	AATAAA	-11	NA	75385554	75400269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_54	chr11	+	4250	24	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	8454	6	3028	-4	3prime_fragment	FALSE	canonical	3	360	junction_2	116.35265148894	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCTTTTGTTTTCTTGCT	NA	False	NA	14	True	AATAAA	-11	NA	75386099	75400269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_56	chr11	+	4004	23	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	8860	6	3434	-4	3prime_fragment	FALSE	canonical	3	360	junction_1	114.268396894879	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCTTTTGTTTTCTTGCT	NA	False	NA	14	True	AATAAA	-11	NA	75386505	75400269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_63	chr11	+	3667	21	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	9570	6	4144	-4	3prime_fragment	FALSE	canonical	3	371	junction_1	108.248914544211	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCTTTTGTTTTCTTGCT	NA	False	NA	14	True	AATAAA	-11	NA	75387215	75400269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_67	chr11	+	3259	19	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	13109	5	7683	-3	3prime_fragment	FALSE	canonical	3	454	junction_1	102.170337073819	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTTTTGTTTTCTTGCTG	NA	False	NA	15	True	AATAAA	-12	NA	75390754	75400270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_72	chr11	+	3078	18	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	13391	6	7965	-4	3prime_fragment	FALSE	canonical	3	463	junction_5	101.371494665886	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCTTTTGTTTTCTTGCT	NA	False	NA	14	True	AATAAA	-11	NA	75391036	75400269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_75	chr11	+	2736	16	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	14036	4	8610	-2	3prime_fragment	FALSE	canonical	3	463	junction_3	102.250324639528	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTGTTTTCTTGCTGT	NA	False	NA	16	True	AATAAA	-13	NA	75391681	75400271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_79	chr11	+	2353	13	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	14979	2	9553	0	3prime_fragment	FALSE	canonical	3	498	junction_3	96.4177830531738	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTTCTTGCTGTTA	NA	False	NA	18	True	AATAAA	-15	NA	75392624	75400273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020850.15_80	chr11	+	2150	12	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	15746	4	10320	-2	3prime_fragment	FALSE	canonical	3	498	junction_2	98.309596985768	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTGTTTTCTTGCTGT	NA	False	NA	16	True	AATAAA	-13	NA	75393391	75400271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
ENSMUSG00000020857.12_0	chr11	-	630	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	380	2	-96	1	multi-exon	FALSE	canonical	3	5665	junction_4	866.911327645452	1426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGCAGTGTTCAGTACT	NA	False	NA	-30	True	NA	NA	NA	93846705	93840641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
ENSMUSG00000020859.17_1	chr11	+	7399	30	NIC	ENSMUSG00000020859.17	novel	7340	29	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_26	18.5369765764142	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGTGTGAAGTCTAGT	651	False	NA	4	True	TATAAA	-11	NA	93886903	94016906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_93887400_93904448_93904570_93927425_93927497_93934397_93934493_93939233_93939385_93958718_93958927_93959761_93959862_93962390_93962513_93972165_93972224_93973585_93973739_93974773_93974826_93977072_93977204_93980424_93980482_93981383_93981558_93982589_93982720_93983163_93983254_93983640_93983809_93984312_93984485_93988043_93988263_93988506_93988703_93989852_93989979_93990932_93991014_93992916_93992985_93997459_93997609_93999280_93999453_94002858_94002973_94004088_94004128_94004998_94005176_94007555_94007706_94013547
ENSMUSG00000020859.17_13	chr11	+	6895	26	FSM	ENSMUSG00000020859.17	ENSMUST00000103168.10	6840	26	-60	5	3	0	multi-exon	FALSE	canonical	3	8	junction_1	14.9277727742621	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGTGTGAAGTCTAGT	NA	False	NA	4	True	TATAAA	-11	NA	93935033	94016906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_93935352_93939233_93939385_93958718_93958927_93959761_93959862_93962390_93962513_93972165_93972224_93973585_93973739_93974773_93974826_93977072_93977204_93980424_93980482_93981383_93981558_93982589_93982720_93983163_93983254_93983640_93983809_93984312_93984485_93988043_93988263_93988506_93988703_93989852_93989979_93990932_93991014_93992916_93992985_93997459_93997609_93999280_93999453_94002858_94002973_94004998_94005176_94007555_94007706_94013547
ENSMUSG00000020859.17_21	chr11	+	5046	13	ISM	ENSMUSG00000020859.17	ENSMUST00000024979.15	6756	27	48550	8	10127	-5	3prime_fragment	FALSE	canonical	3	69	junction_10	3.65433532488012	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAACATGTGTGAAGT	NA	False	NA	-1	True	TATAAA	-6	NA	93983740	94016901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_93983809_93984312_93984485_93988043_93988263_93988506_93988703_93989852_93989979_93990932_93991014_93992916_93992985_93997459_93997609_93999280_93999453_94002858_94002973_94004998_94005176_94007555_94007706_94013547
ENSMUSG00000020859.17_26	chr11	+	3630	3	ISM	ENSMUSG00000020859.17	ENSMUST00000153076.2	5954	21	31441	5	31441	0	3prime_fragment	FALSE	canonical	3	71	junction_1	5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGTGTGAAGTCTAGT	8510	False	NA	4	True	TATAAA	-11	NA	94005054	94016906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94005176_94007555_94007706_94013547
ENSMUSG00000020859.17_27	chr11	+	3469	2	ISM	ENSMUSG00000020859.17	ENSMUST00000153076.2	5954	21	33977	10	33977	-5	3prime_fragment	FALSE	canonical	3	81	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAACATGTGTGAAGT	NA	False	NA	-1	True	TATAAA	-6	NA	94007590	94016901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94007706_94013547
ENSMUSG00000020859.17_28	chr11	+	2089	1	ISM	ENSMUSG00000020859.17	ENSMUST00000041956.14	7340	29	127889	5	41204	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGTGTGAAGTCTAGT	1113	False	NA	4	True	TATAAA	-11	NA	94014817	94016906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94014800_94016900
ENSMUSG00000020859.17_4	chr11	+	7356	29	FSM	ENSMUSG00000020859.17	ENSMUST00000041956.14	7340	29	-30	14	-18	-9	multi-exon	FALSE	canonical	3	49	junction_7	9.62220009633335	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTATATGAAACATGTGTG	646	False	NA	-5	True	TATAAA	-2	NA	93886898	94016897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_93887400_93904448_93904570_93927425_93927497_93934397_93934493_93939233_93939385_93958718_93958927_93959761_93959862_93962390_93962513_93972165_93972224_93973585_93973739_93974773_93974826_93977072_93977204_93980424_93980482_93981383_93981558_93982589_93982720_93983163_93983254_93983640_93983809_93984312_93984485_93988043_93988263_93988506_93988703_93989852_93989979_93990932_93991014_93992916_93992985_93997459_93997609_93999280_93999453_94002858_94002973_94004998_94005176_94007555_94007706_94013547
ENSMUSG00000020863.16_0	chr11	-	1917	11	FSM	ENSMUSG00000020863.16	ENSMUST00000107821.9	2050	11	52	81	22	-3	multi-exon	FALSE	canonical	3	229	junction_1	26.33172990899	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTTGATTGTCTGTGT	NA	False	NA	-8	True	AATAAA	-20	NA	94212762	94181967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUSG00000020863.16_1	chr11	-	3808	1	NIC	ENSMUSG00000020863.16	novel	5244	12	NA	NA	1515	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGGGAAAAGGACTTGGT	NA	False	NA	NA	False	AATAAA	-13	NA	94182534	94178726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_94178700_94182500
ENSMUSG00000020863.16_11	chr11	-	3311	11	FSM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	59	3	29	-3	multi-exon	FALSE	canonical	3	68	junction_1	62.20843994186	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTTGATTGTCTGTGT	NA	False	NA	-8	True	AATAAA	-20	NA	94212755	94181967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUSG00000020863.16_17	chr11	-	1965	12	FSM	ENSMUSG00000020863.16	ENSMUST00000166312.8	5244	12	29	3250	29	-1	multi-exon	FALSE	canonical	3	40	junction_1	82.4268270539502	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTGATTGTCTGTGTCA	NA	False	NA	-6	True	AATAAA	-22	NA	94212755	94181965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_94182405_94183752_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUSG00000020863.16_3	chr11	-	3417	10	FSM	ENSMUSG00000020863.16	ENSMUST00000107820.2	3478	10	58	3	28	-3	multi-exon	FALSE	canonical	3	230	junction_9	26.1850018328748	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTTGATTGTCTGTGT	NA	False	NA	-8	True	AATAAA	-20	NA	94212756	94181967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUSG00000020864.14_0	chr11	+	3435	5	FSM	ENSMUSG00000020864.14	ENSMUST00000107818.9	3487	5	38	14	26	-14	multi-exon	FALSE	canonical	3	454	junction_3	18.6061145863396	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTTAACTGACCCAGCC	4032	False	NA	3	True	ATTAAA	-4	NA	94218864	94232653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_94219214_94224726_94224876_94225253_94225734_94229165_94229348_94230378
ENSMUSG00000020864.14_17	chr11	+	1670	1	ISM	ENSMUSG00000020864.14	ENSMUST00000107818.9	3487	5	12167	4	1878	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCAGCCCATTCTCTCT	NA	False	NA	13	True	ATTAAA	-14	NA	94230993	94232663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94231000_94232700
ENSMUSG00000020864.14_3	chr11	+	1416	5	FSM	ENSMUSG00000020864.14	ENSMUST00000021227.6	1215	5	-201	0	40	0	multi-exon	FALSE	canonical	3	24	junction_4	194.973075064225	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGAAAAGAAAATTTTAA	4046	False	NA	NA	False	AATAAA	-10	NA	94218878	94230335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_94219214_94224726_94224876_94225253_94225734_94229165_94229348_94230065
ENSMUSG00000020865.17_1	chr11	-	1069	5	ISM	ENSMUSG00000020865.17	ENSMUST00000178136.8	5005	31	40829	1	-961	-1	3prime_fragment	FALSE	canonical	3	20	junction_4	28.5164426252645	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGGTCACATGTTACCT	NA	False	NA	-5	True	AATAAA	-16	NA	94242973	94234121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624_94242784_94242905
ENSMUSG00000020865.17_2	chr11	-	1131	4	ISM	ENSMUSG00000020865.17	ENSMUST00000178136.8	5005	31	40889	1	-901	-1	intron_retention	FALSE	canonical	3	69	junction_3	10.6249183003395	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGGTCACATGTTACCT	4	True	NA	-5	True	AATAAA	-16	NA	94242913	94234121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624
ENSMUSG00000020865.17_3	chr11	-	5005	31	FSM	ENSMUSG00000020865.17	ENSMUST00000178136.8	5005	31	-1	1	-1	-1	multi-exon	FALSE	canonical	1	1	junction_29	23.7014064280301	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGGTCACATGTTACCT	NA	False	NA	-5	True	AATAAA	-16	NA	94283803	94234121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624_94242784_94242905_94243053_94245838_94245941_94247798_94247926_94248032_94248233_94249577_94249889_94250066_94250275_94250352_94250501_94250654_94250770_94251997_94252176_94252475_94252644_94254258_94254436_94254522_94254650_94254867_94254935_94255177_94255266_94255598_94255746_94255851_94256056_94258415_94258509_94259006_94259169_94259266_94259445_94262444_94262634_94263698_94263831_94264452_94264515_94264734_94264861_94265547_94265686_94265892_94266019_94266366_94266544_94283696
ENSMUSG00000020865.17_4	chr11	-	924	4	NNC	ENSMUSG00000020865.17	novel	5005	31	NA	NA	-343	-4	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	32.8937684067971	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCATGTGGGTCACATG	592	False	NA	-11	True	AATAAA	-10	NA	94242355	94234127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_94234602_94236772_94236968_94241761_94241929_94242267
ENSMUSG00000020865.17_9	chr11	-	4256	24	NNC	ENSMUSG00000020865.17	novel	5005	31	NA	NA	-2827	-1	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_9	26.3493327162866	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGGTCACATGTTACCT	NA	False	NA	-5	True	AATAAA	-16	NA	94261576	94234121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624_94242784_94242905_94243053_94245838_94245941_94247798_94247926_94248032_94248233_94249577_94249889_94250066_94250275_94250352_94250501_94250654_94250770_94251997_94252176_94252475_94252644_94254258_94254436_94254522_94254650_94254867_94254935_94255177_94255266_94255598_94255746_94255851_94256056_94258415_94258509_94259006_94259169_94259266_94259445_94261268
ENSMUSG00000020868.16_0	chr11	-	2983	10	ISM	ENSMUSG00000020868.16	ENSMUST00000116349.9	3442	11	6929	2	-2394	-2	3prime_fragment	FALSE	canonical	3	112	junction_7	14.0317101198995	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCAATGTCCTTGTTTG	9134	False	NA	-8	True	AATATA	-14	NA	94561412	94554678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_94555736_94557023_94557358_94557924_94558121_94558409_94558673_94558886_94559064_94559150_94559368_94559552_94559634_94560266_94560470_94560732_94560909_94561133
ENSMUSG00000020868.16_10	chr11	-	1610	2	ISM	ENSMUSG00000020868.16	ENSMUST00000116349.9	3442	11	10771	-4	1058	4	3prime_fragment	FALSE	canonical	3	122	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTCCTTGTTTGCTTCCT	NA	False	NA	-2	True	AATATA	-20	NA	94557570	94554672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_94555736_94557023
ENSMUSG00000020868.16_2	chr11	-	3361	11	FSM	ENSMUSG00000020868.16	ENSMUST00000116349.9	3442	11	79	2	-23	-2	multi-exon	FALSE	canonical	3	112	junction_7	13.508885964431	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCAATGTCCTTGTTTG	2284	False	NA	-8	True	AATATA	-14	NA	94568262	94554678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_94555736_94557023_94557358_94557924_94558121_94558409_94558673_94558886_94559064_94559150_94559368_94559552_94559634_94560266_94560470_94560732_94560909_94561133_94561627_94568098
ENSMUSG00000020868.16_3	chr11	-	3955	10	NIC	ENSMUSG00000020868.16	novel	3442	11	NA	NA	-50	-2	intron_retention	FALSE	canonical	3	112	junction_6	13.3499895963339	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCAATGTCCTTGTTTG	2257	False	NA	-8	True	AATATA	-14	NA	94568289	94554678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_94555736_94557023_94558121_94558409_94558673_94558886_94559064_94559150_94559368_94559552_94559634_94560266_94560470_94560732_94560909_94561133_94561627_94568098
ENSMUSG00000020869.9_0	chr11	+	2808	7	FSM	ENSMUSG00000020869.9	ENSMUST00000021239.7	2837	7	27	2	-20	-2	multi-exon	FALSE	canonical	3	2480	junction_6	120.266371026983	4872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTTTCTCCTTTGTGC	NA	False	NA	25	True	ATTAAA	-16	NA	94520619	94536040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_94520936_94522906_94522967_94525370_94525530_94525737_94525843_94529356_94529430_94532045_94532220_94534119
ENSMUSG00000020873.16_0	chr11	+	1272	9	FSM	ENSMUSG00000020873.16	ENSMUST00000131193.3	1299	9	18	9	3	-9	multi-exon	FALSE	canonical	3	66	junction_2	72.2789734293453	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGGAAGTGCGAGACCC	NA	False	NA	12	True	AATAAA	-13	NA	95275734	95282593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95275940_95276626_95276731_95277336_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUSG00000020873.16_1	chr11	+	1292	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	222	9	8	-9	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGGAAGTGCGAGACCC	NA	False	NA	12	True	AATAAA	-13	NA	95275739	95282593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUSG00000020873.16_15	chr11	+	1096	4	ISM	ENSMUSG00000020873.16	ENSMUST00000131193.3	1299	9	3761	9	-1333	-9	3prime_fragment	FALSE	canonical	3	284	junction_2	7.07106781186548	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGGAAGTGCGAGACCC	NA	False	NA	12	True	AATAAA	-13	NA	95279477	95282593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUSG00000020875.10_0	chr11	+	1203	1	ISM	ENSMUSG00000020875.10	ENSMUST00000000010.9	2574	2	3891	45	3825	-45	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGGGGAAAAAAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	96166173	96167376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96166200_96167400
ENSMUSG00000020876.15_0	chr11	-	2225	9	FSM	ENSMUSG00000020876.15	ENSMUST00000021246.9	2551	9	4	322	4	0	multi-exon	FALSE	canonical	3	53	junction_6	14.0529133990073	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGTTGTTGCAATTTG	NA	False	NA	-16	True	AATAAA	-13	NA	96668353	96658702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96666199_96666260_96667793_96667888_96668280
ENSMUSG00000020876.15_1	chr11	-	2173	8	FSM	ENSMUSG00000020876.15	ENSMUST00000107661.10	2197	8	24	0	-4	0	multi-exon	FALSE	canonical	3	35	junction_6	17.839419776416	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGTTGTTGCAATTTG	NA	False	NA	-16	True	AATAAA	-13	NA	96668361	96658702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96667793_96667888_96668280
ENSMUSG00000020876.15_6	chr11	-	1096	1	ISM	ENSMUSG00000020876.15	ENSMUST00000021246.9	2551	9	8559	322	2078	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGTTGTTGCAATTTG	NA	False	NA	-16	True	AATAAA	-13	NA	96659798	96658702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_96658700_96659800
ENSMUSG00000020877.12_0	chr11	+	1516	8	FSM	ENSMUSG00000020877.12	ENSMUST00000021249.11	1530	8	10	4	-4	-4	multi-exon	FALSE	canonical	3	80	junction_5	16.9597362320652	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAACTGGATCTCAAGTC	NA	False	NA	13	True	AATAAA	-19	NA	96920773	96924780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
ENSMUSG00000020877.12_11	chr11	+	1675	7	ISM	ENSMUSG00000020877.12	ENSMUST00000021249.11	1530	8	206	9	10	-1	3prime_fragment	FALSE	canonical	3	80	junction_4	17.8551268703293	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCAGTGAACTGGATCTC	NA	False	NA	8	True	AATAAA	-14	NA	96920969	96924775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
ENSMUSG00000020877.12_7	chr11	+	3353	3	FSM	ENSMUSG00000020877.12	ENSMUST00000133054.8	605	3	-4	-2744	-4	0	multi-exon	FALSE	canonical	3	106	junction_1	14	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGAACTGGATCTCA	NA	False	NA	9	True	AATAAA	-15	NA	96920773	96924776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96920882_96921241_96921416_96921705
ENSMUSG00000020877.12_9	chr11	+	1557	7	FSM	ENSMUSG00000020877.12	ENSMUST00000126874.2	1552	7	3	-8	3	0	multi-exon	FALSE	canonical	3	106	junction_1	9.66810334151545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGATCTCAAGTCTATT	NA	False	NA	17	True	AATAAA	-23	NA	96920829	96924784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96924056_96924144_96924326_96924491
ENSMUSG00000020878.7_0	chr11	-	1121	8	FSM	ENSMUSG00000020878.7	ENSMUST00000021251.7	1336	8	219	-4	219	4	multi-exon	FALSE	canonical	0	0	junction_2	1.24539969815448	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCTTTTCATGTTACAGG	4367	False	NA	NA	False	AATAAA	-17	NA	96932014	96925423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_96925851_96926284_96926431_96926697_96926768_96926921_96927032_96927295_96927343_96929597_96929707_96931692_96931799_96931908
ENSMUSG00000020882.18_1	chr11	-	3386	14	FSM	ENSMUSG00000020882.18	ENSMUST00000017552.13	3396	14	2	8	2	-8	multi-exon	FALSE	canonical	2	14	junction_1	30.0140006777902	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCTGAGCCTGTTTTCT	NA	False	NA	-8	True	TATAAA	-25	NA	97913458	97892341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97894189_97895954_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97901452_97901473_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ENSMUSG00000020882.18_16	chr11	-	1720	12	NIC	ENSMUSG00000020882.18	novel	1880	13	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	22.8711807541917	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGTCTGGTGTCTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	97913456	97895751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ENSMUSG00000020882.18_17	chr11	-	1879	13	FSM	ENSMUSG00000020882.18	ENSMUST00000092736.11	1880	13	-1	2	-1	-2	multi-exon	FALSE	canonical	3	20	junction_6	26.3832596335041	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCGTCTGGTGTCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	97913461	97895752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902168_97902324_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ENSMUSG00000020882.18_18	chr11	-	3595	10	NIC	ENSMUSG00000020882.18	novel	1880	13	NA	NA	-5	-3	intron_retention	FALSE	canonical	3	63	junction_8	15.475986974649	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCGTCTGGTGTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	97913465	97895753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ENSMUSG00000020882.18_2	chr11	-	3363	13	NIC	ENSMUSG00000020882.18	novel	3396	14	NA	NA	-2	-8	combination_of_known_junctions	TRUE	canonical	2	14	junction_1	28.323895486948	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCTGAGCCTGTTTTCT	NA	False	NA	-8	True	TATAAA	-25	NA	97913455	97892341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97894189_97895954_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ENSMUSG00000020882.18_22	chr11	-	1746	13	FSM	ENSMUSG00000020882.18	ENSMUST00000107562.2	1745	13	-2	1	-2	-1	multi-exon	FALSE	canonical	3	23	junction_7	26.3358384884341	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGTCTGGTGTCTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	97913462	97895751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97901452_97901473_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ENSMUSG00000020882.18_24	chr11	-	1286	9	NIC	ENSMUSG00000020882.18	novel	1778	12	NA	NA	-445	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	25.6855990780826	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGTCTGGTGTCTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	97903822	97895751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902691_97902769_97903010_97903148_97903637
ENSMUSG00000020882.18_28	chr11	-	3217	11	NIC	ENSMUSG00000020882.18	novel	1880	13	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	63	junction_9	14.7651616990807	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGTCTGGTGTCTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	97913464	97895751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ENSMUSG00000020882.18_9	chr11	-	4851	12	NIC	ENSMUSG00000020882.18	novel	3396	14	NA	NA	-1	-8	intron_retention	FALSE	canonical	2	14	junction_1	24.7242645229003	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCTGAGCCTGTTTTCT	NA	False	NA	-8	True	TATAAA	-25	NA	97913454	97892341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97894189_97895954_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
ENSMUSG00000020883.19_12	chr11	-	2487	15	NIC	ENSMUSG00000020883.19	novel	8601	15	NA	NA	-45	2385	combination_of_known_junctions	FALSE	canonical	3	15	junction_14	36.7548414137095	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTACCATCAGGGGA	2329	False	NA	-18	True	AATAAA	-14	NA	98041274	97979531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140_98019203_98040941
ENSMUSG00000020883.19_13	chr11	-	4157	14	NIC	ENSMUSG00000020883.19	novel	8601	15	NA	NA	24	2386	intron_retention	TRUE	canonical	3	142	junction_8	6.90767517558266	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTTACCATCAGGGGAC	3195	False	NA	-17	True	AATAAA	-15	NA	98040408	97979530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140_98019203_98040141
ENSMUSG00000020883.19_19	chr11	-	2379	14	NIC	ENSMUSG00000020883.19	novel	8601	15	NA	NA	7	2381	combination_of_known_junctions	FALSE	canonical	3	12	junction_12	38.3036760328971	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTAACTTTTACCATCAG	3178	False	NA	-22	True	AATAAA	-10	NA	98040425	97979535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98019140_98019203_98040141
ENSMUSG00000020883.19_2	chr11	-	4058	1	ISM	ENSMUSG00000020883.19	ENSMUST00000103143.10	8601	15	62999	0	13450	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTTTCATTTCCCTGT	8989	False	NA	-10	True	ATTAAA	-15	NA	97977439	97973381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97973400_97977400
ENSMUSG00000020883.19_9	chr11	-	2421	15	FSM	ENSMUSG00000020883.19	ENSMUST00000103143.10	8601	15	26	6154	20	2381	multi-exon	FALSE	canonical	3	137	junction_5	8.14567620374923	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTAACTTTTACCATCAG	3191	False	NA	-22	True	AATAAA	-10	NA	98040412	97979535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140_98019203_98040141
ENSMUSG00000020888.17_0	chr11	+	2965	15	FSM	ENSMUSG00000020888.17	ENSMUST00000019362.15	2968	15	1	2	1	-2	multi-exon	FALSE	canonical	3	488	junction_4	30.5160546571265	1066	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCCCCAAGCCTCTGGCT	7136	False	NA	10	True	AATAAA	-14	NA	69891421	69900935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969
ENSMUSG00000020889.12_0	chr11	-	2667	8	FSM	ENSMUSG00000020889.12	ENSMUST00000064941.7	2721	8	51	3	51	-3	multi-exon	FALSE	canonical	3	30	junction_7	7.40104791256493	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGGCTTCTGTGATGT	NA	False	NA	-3	True	NA	NA	NA	98666108	98658760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_98659246_98659874_98660086_98660528_98660715_98661013_98661658_98662025_98662171_98662262_98662352_98662618_98662961_98665543
ENSMUSG00000020890.12_1	chr11	-	2380	1	ISM	ENSMUSG00000020890.12	ENSMUST00000021259.9	8331	19	16525	1	16525	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGGTGTGTGGTGCTC	NA	False	NA	NA	False	AATAAA	-17	NA	69111323	69108943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69108900_69111300
ENSMUSG00000020891.12_0	chr11	-	175	1	ISM	ENSMUSG00000020891.12	ENSMUST00000021262.10	3226	14	13419	318	12960	-318	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAACAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	69075250	69075075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69075100_69075200
ENSMUSG00000020893.18_0	chr11	+	3313	18	FSM	ENSMUSG00000020893.18	ENSMUST00000101004.9	3507	18	30	164	30	-2	multi-exon	FALSE	canonical	3	14	junction_5	5.21177798431451	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTGATTCTTCCCCG	NA	False	NA	10	True	AATAAA	-16	NA	68986072	68997120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68986130_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215
ENSMUSG00000020893.18_10	chr11	+	4291	4	NIC	ENSMUSG00000020893.18	novel	4537	22	NA	NA	4110	-6	intron_retention	FALSE	canonical	2	9	junction_1	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATGAAAAACCAAAAACC	NA	False	NA	NA	False	AATACA	-8	NA	68995457	69000768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_68998546_68998686_68998877_68999186_68999338_68999906
ENSMUSG00000020893.18_19	chr11	+	2389	7	ISM	ENSMUSG00000020893.18	ENSMUST00000102605.3	4537	22	4142	20	4142	-8	3prime_fragment	FALSE	canonical	2	8	junction_2	7.41619848709566	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAATGAAAAACCAAAAA	NA	False	NA	NA	False	AATACA	-6	NA	68995489	69000766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_68995640_68996215_68996450_68997278_68997896_68998358_68998546_68998686_68998877_68999186_68999338_68999906
ENSMUSG00000020893.18_2	chr11	+	4646	23	NIC	ENSMUSG00000020893.18	novel	4537	22	NA	NA	20	-19	combination_of_known_junctions	FALSE	canonical	2	8	junction_18	6.97649536682322	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATACAAAATGACAAAATGA	NA	False	NA	NA	False	NA	NA	NA	68986062	69000755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_68986130_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215_68996450_68997278_68997896_68998358_68998546_68998686_68998877_68999186_68999338_68999906
ENSMUSG00000020893.18_3	chr11	+	4646	23	FSM	ENSMUSG00000020893.18	ENSMUST00000021271.14	4671	23	7	18	7	-6	multi-exon	FALSE	canonical	2	8	junction_18	7.25181652933985	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATGAAAAACCAAAAACC	NA	False	NA	NA	False	AATACA	-8	NA	68989780	69000768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68989835_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215_68996450_68997278_68997896_68998358_68998546_68998686_68998877_68999186_68999338_68999906
ENSMUSG00000020893.18_4	chr11	+	3304	18	ISM	ENSMUSG00000020893.18	ENSMUST00000021271.14	4671	23	13	3666	13	-2	5prime_fragment	FALSE	canonical	3	10	junction_1	5.84636047433339	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTGATTCTTCCCCG	NA	False	NA	10	True	AATAAA	-16	NA	68989786	68997120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_68989835_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215
ENSMUSG00000020894.17_0	chr11	+	2160	5	FSM	ENSMUSG00000020894.17	ENSMUST00000021273.13	2205	5	40	5	8	-5	multi-exon	FALSE	canonical	3	85	junction_4	21.4126131053639	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCATATGGTGTCCAAAAT	NA	False	NA	13	True	AATAAA	-13	NA	68979355	68983205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68979454_68979931_68980053_68980556_68980716_68980801_68980854_68981475
ENSMUSG00000020894.17_1	chr11	+	3275	3	NIC	ENSMUSG00000020894.17	novel	1113	4	NA	NA	-2	-5	intron_retention	FALSE	canonical	3	124	junction_1	2	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCATATGGTGTCCAAAAT	NA	False	NA	13	True	AATAAA	-13	NA	68979366	68983205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_68979454_68979931_68980716_68980801
ENSMUSG00000020894.17_11	chr11	+	1940	3	ISM	ENSMUSG00000020894.17	ENSMUST00000021273.13	2205	5	1239	8	123	-8	3prime_fragment	FALSE	canonical	3	85	junction_2	21.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAACCATATGGTGTCCAA	NA	False	NA	10	True	AATAAA	-10	NA	68980554	68983202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_68980716_68980801_68980854_68981475
ENSMUSG00000020894.17_4	chr11	+	2782	4	FSM	ENSMUSG00000020894.17	ENSMUST00000117780.2	1113	4	20	-1689	8	-5	multi-exon	FALSE	canonical	3	124	junction_1	8.17856276425687	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCATATGGTGTCCAAAAT	NA	False	NA	13	True	AATAAA	-13	NA	68979355	68983205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68979454_68979931_68980053_68980556_68980716_68980801
ENSMUSG00000020894.17_5	chr11	+	1954	1	NIC	ENSMUSG00000020894.17	novel	2205	5	NA	NA	817	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAACCATATGGTGTCCAA	NA	False	NA	10	True	AATAAA	-10	NA	68981248	68983202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_68981200_68983200
ENSMUSG00000020895.15_0	chr11	+	754	5	FSM	ENSMUSG00000020895.15	ENSMUST00000075980.12	779	5	18	7	11	-1	multi-exon	FALSE	canonical	3	348	junction_4	23.6893963620857	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAGCAAGGCGTATAC	4665	False	NA	NA	False	AATAAA	-12	NA	68961649	68963849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248_68963346_68963571
ENSMUSG00000020897.13_0	chr11	+	1921	8	FSM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	26	3	7	-3	multi-exon	FALSE	canonical	3	581	junction_1	36.6756327936728	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATACTGTGGTGGTCTGAA	NA	False	NA	13	True	AATAAA	-23	NA	68936503	68942487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
ENSMUSG00000020897.13_12	chr11	+	3689	7	NIC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	589	junction_2	30.4630924234556	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTGGTGGTCTGAAT	NA	False	NA	14	True	AATAAA	-24	NA	68936512	68942488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
ENSMUSG00000020897.13_8	chr11	+	1797	9	FSM	ENSMUSG00000020897.13	ENSMUST00000108666.8	1831	9	31	3	7	-3	multi-exon	FALSE	canonical	3	35	junction_1	202.492592457107	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATACTGTGGTGGTCTGAA	NA	False	NA	13	True	AATAAA	-23	NA	68936503	68942487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68936637_68936760_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
ENSMUSG00000020898.19_2	chr11	+	3958	23	FSM	ENSMUSG00000020898.19	ENSMUST00000021278.14	4164	23	203	3	17	0	multi-exon	FALSE	canonical	3	209	junction_14	54.4241833704208	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5289	False	NA	18	True	AATAAA	-18	NA	68906939	68927296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ENSMUSG00000020898.19_4	chr11	+	3961	23	FSM	ENSMUSG00000020898.19	ENSMUST00000116359.3	3978	23	17	0	17	0	multi-exon	FALSE	canonical	3	218	junction_14	52.8328292942908	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5289	False	NA	18	True	AATAAA	-18	NA	68906939	68927296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ENSMUSG00000020898.19_43	chr11	+	3940	23	FSM	ENSMUSG00000020898.19	ENSMUST00000152979.8	3976	23	33	3	-15	0	multi-exon	FALSE	canonical	3	48	junction_2	94.2205957376466	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5294	False	NA	18	True	AATAAA	-18	NA	68906944	68927296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68906992_68911855_68912020_68913218_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ENSMUSG00000020899.17_16	chr11	-	2035	1	ISM	ENSMUSG00000020899.17	ENSMUST00000021282.12	6373	28	20725	4	2871	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTCTGTTTTCCGATG	NA	False	NA	-15	True	NA	NA	NA	68878561	68876526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_68876500_68878600
ENSMUSG00000020899.17_22	chr11	-	5602	28	FSM	ENSMUSG00000020899.17	ENSMUST00000021282.12	6373	28	18	753	9	10	multi-exon	FALSE	canonical	3	373	junction_27	41.3360546031052	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGCATGTTGGATTTCTA	NA	False	NA	NA	False	ATTAAA	-22	NA	68899268	68877275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
ENSMUSG00000020899.17_23	chr11	-	5556	27	ISM	ENSMUSG00000020899.17	ENSMUST00000021282.12	6373	28	4586	761	4577	2	3prime_fragment	FALSE	canonical	3	385	junction_15	38.4410137543424	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGACTAGCATGTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	68894700	68877283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521
ENSMUSG00000020900.16_0	chr11	+	7511	41	FSM	ENSMUSG00000020900.16	ENSMUST00000102611.10	7791	41	187	93	-10	-5	multi-exon	TRUE	canonical	3	123	junction_6	27.8530855561821	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATATTTGCGCCTGCTCTG	NA	False	NA	-82	True	AATAAA	-13	NA	68582927	68707365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68583009_68590035_68590412_68612145_68612303_68625213_68625242_68636142_68636246_68642767_68642861_68650571_68650636_68651478_68651578_68653336_68653481_68653663_68653760_68655061_68655181_68655866_68656020_68659024_68659199_68661709_68661884_68662697_68662813_68673931_68674126_68674208_68674331_68675752_68675823_68676021_68676183_68676443_68676553_68676650_68676783_68678163_68678371_68680930_68681069_68681442_68681567_68682688_68682861_68683881_68684095_68688157_68688303_68689075_68689283_68691640_68691746_68692402_68692556_68692933_68693183_68693665_68693879_68695452_68695666_68697950_68698113_68699618_68699748_68700985_68701075_68702426_68702551_68702622_68702832_68703794_68703904_68705207_68705381_68705752
ENSMUSG00000020900.16_24	chr11	+	5525	26	ISM	ENSMUSG00000020900.16	ENSMUST00000092984.6	7759	41	90802	83	-314	-3	3prime_fragment	FALSE	canonical	3	141	junction_1	25.2632222806197	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTGCGCCTGCTCTGTT	NA	False	NA	-80	True	AATAAA	-15	NA	68673943	68707367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_68674126_68674208_68674331_68675752_68675823_68676021_68676183_68676443_68676553_68676650_68676783_68678163_68678371_68680930_68681069_68681442_68681567_68682688_68682861_68683881_68684095_68688157_68688303_68689075_68689283_68691640_68691746_68692402_68692556_68692933_68693183_68693665_68693879_68695452_68695666_68697950_68698113_68699618_68699748_68700985_68701075_68702426_68702551_68702622_68702832_68703794_68703904_68705207_68705381_68705752
ENSMUSG00000020900.16_39	chr11	+	3686	14	ISM	ENSMUSG00000020900.16	ENSMUST00000092984.6	7759	41	105994	87	-13117	-7	3prime_fragment	FALSE	canonical	3	161	junction_3	19.8169134622826	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGATATTTGCGCCTGCTC	NA	False	NA	-84	True	AATAAA	-11	NA	68689135	68707363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_68689283_68691640_68691746_68692402_68692556_68692933_68693183_68693665_68693879_68695452_68695666_68697950_68698113_68699618_68699748_68700985_68701075_68702426_68702551_68702622_68702832_68703794_68703904_68705207_68705381_68705752
ENSMUSG00000020900.16_42	chr11	+	3155	11	ISM	ENSMUSG00000020900.16	ENSMUST00000092984.6	7759	41	109922	83	-9189	-3	3prime_fragment	FALSE	canonical	3	179	junction_4	17.7876361554873	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTGCGCCTGCTCTGTT	929	False	NA	-80	True	AATAAA	-15	NA	68693063	68707367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_68693183_68693665_68693879_68695452_68695666_68697950_68698113_68699618_68699748_68700985_68701075_68702426_68702551_68702622_68702832_68703794_68703904_68705207_68705381_68705752
ENSMUSG00000020901.14_0	chr11	+	862	6	ISM	ENSMUSG00000020901.14	ENSMUST00000021283.8	4370	19	-1	11005	-1	-6486	5prime_fragment	FALSE	canonical	0	0	junction_3	0.979795897113271	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGTTCCCACAGAGG	NA	False	NA	NA	False	NA	NA	NA	68322945	68377670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_68323089_68364620_68364737_68366228_68366330_68367130_68367200_68368269_68368409_68377376
ENSMUSG00000020902.13_0	chr11	-	5871	7	FSM	ENSMUSG00000020902.13	ENSMUST00000021284.4	5738	7	-144	11	42	-11	multi-exon	FALSE	canonical	3	78	junction_5	10.7922297150414	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTCTGTGTCCCAGCCT	NA	False	NA	-7	True	AATAAA	-10	NA	68277796	68100200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_68104161_68117361_68117437_68148280_68148335_68151322_68151473_68168248_68168438_68275928_68277011_68277435
ENSMUSG00000020902.13_1	chr11	-	5017	6	ISM	ENSMUSG00000020902.13	ENSMUST00000021284.4	5738	7	1138	8	1138	-8	3prime_fragment	FALSE	canonical	3	78	junction_5	11.5827457884562	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTGTCCCAGCCTTTC	NA	False	NA	-4	True	AATAAA	-13	NA	68276514	68100197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_68104161_68117361_68117437_68148280_68148335_68151322_68151473_68168248_68168438_68275928
ENSMUSG00000020902.13_3	chr11	-	2688	1	ISM	ENSMUSG00000020902.13	ENSMUST00000021284.4	5738	7	174766	9	174766	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTGTGTCCCAGCCTTT	NA	False	NA	-5	True	AATAAA	-12	NA	68102886	68100198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_68100200_68102900
ENSMUSG00000020902.13_7	chr11	-	5925	7	ISM	ENSMUSG00000020902.13	ENSMUST00000108674.9	5874	8	22	13	22	-13	intron_retention	TRUE	canonical	0	0	junction_6	36.3073301445069	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGTTCTGTGTCCCAGC	NA	False	NA	-9	True	AATAAA	-8	NA	68291627	68100202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_68104161_68117361_68117437_68148280_68148335_68151322_68151473_68168248_68168438_68275928_68277011_68291210
ENSMUSG00000020903.14_0	chr11	+	843	8	FSM	ENSMUSG00000020903.14	ENSMUST00000021285.14	4394	8	282	3269	-5	109	multi-exon	FALSE	canonical	3	260	junction_1	20.1626043021455	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGGTGTACCTTGTTT	NA	False	NA	17	True	AATAAA	-17	NA	67857300	68094705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67902140_67902266_67911731_67911825_68000102_68000205_68094531
ENSMUSG00000020903.14_1	chr11	+	1635	5	FSM	ENSMUSG00000020903.14	ENSMUST00000021286.11	1638	5	3	0	3	0	multi-exon	FALSE	canonical	3	5	junction_4	126.986957991756	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTCTGGAGTGTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	67857297	67878433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67877150
ENSMUSG00000020903.14_2	chr11	+	1499	3	FSM	ENSMUSG00000020903.14	ENSMUST00000108675.2	1497	3	-5	3	-5	-3	multi-exon	FALSE	canonical	3	260	junction_1	29.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAACAATGGGGGCCTTC	NA	False	NA	NA	False	AATAAA	-12	NA	67857300	67865414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_67857344_67860597_67860698_67864058
ENSMUSG00000020904.12_0	chr11	-	2191	14	FSM	ENSMUSG00000020904.12	ENSMUST00000021287.12	2199	14	4	4	4	-4	multi-exon	TRUE	canonical	0	0	junction_9	5.45557637738374	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGATCTCTTTTCTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	67856464	67815637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_67816095_67817204_67817317_67818134_67818238_67821554_67821707_67822549_67822696_67826649_67826799_67829742_67829914_67830604_67830706_67836178_67836296_67837123_67837224_67840393_67840523_67844306_67844444_67844797_67844998_67856347
ENSMUSG00000020905.12_0	chr11	-	4268	15	FSM	ENSMUSG00000020905.12	ENSMUST00000108677.2	4447	15	2	177	2	-177	multi-exon	FALSE	canonical	1	2	junction_3	6.60086574408453	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGCAAATGGCGGACT	NA	False	NA	NA	False	AATAAA	-14	NA	67812977	67745525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_67747371_67766088_67766254_67767198_67767358_67770636_67770971_67771090_67771218_67772031_67772110_67774031_67774136_67778575_67778688_67782175_67782312_67783838_67783975_67788046_67788183_67789709_67789803_67795146_67795251_67804579_67804712_67812370
ENSMUSG00000020905.12_1	chr11	-	4252	15	FSM	ENSMUSG00000020905.12	ENSMUST00000021288.10	4462	15	-17	227	-17	-227	multi-exon	FALSE	canonical	3	14	junction_7	4.31950960935453	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAATATGAGATCTA	NA	False	NA	NA	False	AATAAA	-12	NA	67812996	67745575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_67747371_67766088_67766254_67767198_67767358_67770621_67770971_67771090_67771218_67772031_67772110_67774031_67774136_67778575_67778688_67782175_67782312_67783838_67783975_67788046_67788183_67789709_67789803_67795146_67795251_67804579_67804712_67812370
ENSMUSG00000020905.12_13	chr11	-	3165	12	ISM	ENSMUSG00000020905.12	ENSMUST00000021288.10	4462	15	-26	24250	-26	18466	5prime_fragment	FALSE	canonical	3	14	junction_4	3.76148379374131	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTCTCCAATCCCTCTC	NA	False	NA	NA	False	NA	NA	NA	67813005	67769598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_67770971_67771090_67771218_67772031_67772110_67774031_67774136_67778575_67778688_67782175_67782312_67783838_67783975_67788046_67788183_67789709_67789803_67795146_67795251_67804579_67804712_67812370
ENSMUSG00000020905.12_4	chr11	-	1107	1	ISM	ENSMUSG00000020905.12	ENSMUST00000021288.10	4462	15	66297	227	20763	-227	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAATATGAGATCTA	NA	False	NA	NA	False	AATAAA	-12	NA	67746682	67745575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_67745600_67746700
ENSMUSG00000020905.12_9	chr11	-	3212	5	ISM	ENSMUSG00000020905.12	ENSMUST00000021288.10	4462	15	-29	40589	-29	2127	5prime_fragment	FALSE	canonical	3	16	junction_4	2.69258240356725	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAAGGGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-29	NA	67813008	67785937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_67788183_67789709_67789803_67795146_67795251_67804579_67804712_67812370
ENSMUSG00000020908.15_10	chr11	+	2842	17	ISM	ENSMUSG00000020908.15	ENSMUST00000108689.8	6031	41	15138	2	15138	-2	3prime_fragment	FALSE	canonical	2	11	junction_1	5.51949669354009	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGGTTTGTTTTGTCTT	NA	False	NA	4	True	AATAAA	-15	NA	66984263	66993110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_66984413_66984492_66984584_66985299_66985690_66985780_66985908_66986834_66986954_66987126_66987324_66987700_66987885_66988704_66988871_66989403_66989529_66990003_66990313_66990425_66990630_66990701_66990828_66991623_66991795_66991913_66992019_66992163_66992260_66992353_66992492_66992965
ENSMUSG00000020908.15_3	chr11	+	3237	19	ISM	ENSMUSG00000020908.15	ENSMUST00000108689.8	6031	41	14053	2	14053	-2	3prime_fragment	TRUE	canonical	1	2	junction_1	7.11913609684715	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGGTTTGTTTTGTCTT	NA	False	NA	4	True	AATAAA	-15	NA	66983178	66993110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_66983400_66983962_66984140_66984266_66984413_66984492_66984584_66985299_66985690_66985780_66985908_66986834_66986954_66987126_66987324_66987700_66987885_66988704_66988871_66989403_66989529_66990003_66990313_66990425_66990630_66990701_66990828_66991623_66991795_66991913_66992019_66992163_66992260_66992353_66992492_66992965
ENSMUSG00000020908.15_7	chr11	+	2929	16	NIC	ENSMUSG00000020908.15	novel	5992	40	NA	NA	15131	-2	intron_retention	FALSE	canonical	2	13	junction_1	5.25187797099497	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGGTTTGTTTTGTCTT	NA	False	NA	4	True	AATAAA	-15	NA	66984256	66993110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_66984584_66985299_66985690_66985780_66985908_66986834_66986954_66987126_66987324_66987700_66987885_66988704_66988871_66989403_66989529_66990003_66990313_66990425_66990630_66990701_66990828_66991623_66991795_66991913_66992019_66992163_66992260_66992353_66992492_66992965
ENSMUSG00000020908.15_9	chr11	+	3638	15	NIC	ENSMUSG00000020908.15	novel	5992	40	NA	NA	15138	-2	intron_retention	FALSE	canonical	2	13	junction_2	5.09351328171631	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGGTTTGTTTTGTCTT	NA	False	NA	4	True	AATAAA	-15	NA	66984263	66993110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_66985690_66985780_66985908_66986834_66986954_66987126_66987324_66987700_66987885_66988704_66988871_66989403_66989529_66990003_66990313_66990425_66990630_66990701_66990828_66991623_66991795_66991913_66992019_66992163_66992260_66992353_66992492_66992965
ENSMUSG00000020910.17_0	chr11	-	1280	5	FSM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	-11	14	4	-14	multi-exon	FALSE	canonical	3	79	junction_4	11.1579568022107	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGTACTCTTAAGTATTC	NA	False	NA	-12	True	CATAAA	-14	NA	66943407	66928880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66943360
ENSMUSG00000020910.17_1	chr11	-	1220	2	FSM	ENSMUSG00000020910.17	ENSMUST00000136013.2	486	2	-520	-214	-520	-14	multi-exon	FALSE	canonical	3	109	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGTACTCTTAAGTATTC	NA	False	NA	-12	True	CATAAA	-14	NA	66931873	66928880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_66929272_66931044
ENSMUSG00000020910.17_10	chr11	-	1543	5	FSM	ENSMUSG00000020910.17	ENSMUST00000146338.8	1531	5	13	-25	4	25	multi-exon	FALSE	canonical	2	5	junction_2	39.9710832978042	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGGGGCTGTGTTTGGCC	NA	False	NA	NA	False	AATAAA	-35	NA	66943407	66928705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_66929272_66931044_66931162_66932218_66932934_66942506_66942605_66943360
ENSMUSG00000020910.17_12	chr11	-	1242	4	ISM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	795	2	795	-2	3prime_fragment	FALSE	canonical	3	86	junction_2	9.53356643071673	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATTCTGTTTGTGTACA	NA	False	NA	0	True	CATAAA	-26	NA	66942601	66928868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506
ENSMUSG00000020910.17_3	chr11	-	4207	3	NIC	ENSMUSG00000020910.17	novel	1531	5	NA	NA	1	-14	intron_retention	FALSE	canonical	3	79	junction_2	7.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGTACTCTTAAGTATTC	NA	False	NA	-12	True	CATAAA	-14	NA	66943416	66928880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_66932934_66942506_66942605_66943360
ENSMUSG00000020910.17_4	chr11	-	2435	4	NIC	ENSMUSG00000020910.17	novel	1531	5	NA	NA	0	-14	intron_retention	FALSE	canonical	3	79	junction_3	12.2474487139159	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGTACTCTTAAGTATTC	NA	False	NA	-12	True	CATAAA	-14	NA	66943417	66928880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_66929272_66931044_66932934_66942506_66942605_66943360
ENSMUSG00000020910.17_8	chr11	-	1221	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-15	-3	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	43.2229362980145	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTATTCTGTTTGTGTAC	NA	False	NA	-1	True	CATAAA	-25	NA	66943435	66928869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_66929272_66931044_66931162_66932306_66932934_66943360
ENSMUSG00000020911.15_0	chr11	-	1374	6	FSM	ENSMUSG00000020911.15	ENSMUST00000007317.8	1576	6	192	10	192	-10	multi-exon	FALSE	canonical	2	8	junction_5	2.56124969497314	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGAAAAAGGATACCTTG	9791	False	NA	NA	False	AATAAA	-11	NA	100036754	100031645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100031994_100032105_100032232_100032348_100032511_100032877_100033035_100033251_100033335_100036256
ENSMUSG00000020914.18_1	chr11	-	5119	36	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-1	-15	combination_of_known_junctions	FALSE	canonical	3	459	junction_1	255.273980064477	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATGCAAGCCATCCAT	NA	False	NA	-15	True	AATAAA	-7	NA	98915016	98883783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_98884152_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ENSMUSG00000020914.18_14	chr11	-	5204	36	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-1	-15	combination_of_known_junctions	FALSE	canonical	3	633	junction_4	229.626625065073	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATGCAAGCCATCCAT	NA	False	NA	-15	True	AATAAA	-7	NA	98915016	98883783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886202_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ENSMUSG00000020914.18_15	chr11	-	5553	35	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	0	-15	intron_retention	FALSE	canonical	3	633	junction_3	222.753904349877	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATGCAAGCCATCCAT	NA	False	NA	-15	True	AATAAA	-7	NA	98915015	98883783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_98884762_98885032_98885233_98886069_98886202_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ENSMUSG00000020914.18_2	chr11	-	5207	36	FSM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-1	15	-1	-15	multi-exon	FALSE	canonical	3	1094	junction_4	183.786113485769	947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATGCAAGCCATCCAT	NA	False	NA	-15	True	AATAAA	-7	NA	98915016	98883783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ENSMUSG00000020914.18_23	chr11	-	5116	36	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-1	-15	combination_of_known_junctions	FALSE	canonical	3	459	junction_1	289.08507892512	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATGCAAGCCATCCAT	NA	False	NA	-15	True	AATAAA	-7	NA	98915016	98883783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_98884152_98884589_98884762_98885032_98885233_98886069_98886202_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ENSMUSG00000020914.18_6	chr11	-	5557	35	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-1	-15	intron_retention	FALSE	canonical	3	1094	junction_3	172.605656925746	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATGCAAGCCATCCAT	NA	False	NA	-15	True	AATAAA	-7	NA	98915016	98883783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ENSMUSG00000020917.18_0	chr11	-	4286	29	FSM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	132	8	1	-3	multi-exon	FALSE	canonical	3	1365	junction_16	642.699119466695	3846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAATGGCGTGATGCTCTT	NA	False	NA	-22	True	AATAAA	-10	NA	100418694	100367186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ENSMUSG00000020917.18_1	chr11	-	4256	28	FSM	ENSMUSG00000020917.18	ENSMUST00000007131.16	4393	28	132	5	1	-3	multi-exon	FALSE	canonical	3	2198	junction_15	363.337822300204	5610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAATGGCGTGATGCTCTT	NA	False	NA	-22	True	AATAAA	-10	NA	100418694	100367186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ENSMUSG00000020918.15_1	chr11	-	3023	18	FSM	ENSMUSG00000020918.15	ENSMUST00000006973.12	3043	18	14	6	-2	-6	multi-exon	FALSE	canonical	3	387	junction_12	55.3609733498447	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGTGTGATTGTTTTTT	6793	False	NA	-7	True	AATAAA	-12	NA	100603277	100595577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599809_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
ENSMUSG00000020918.15_2	chr11	-	3026	18	FSM	ENSMUSG00000020918.15	ENSMUST00000103118.4	3046	18	14	6	-2	-6	multi-exon	FALSE	canonical	3	120	junction_10	104.829867108865	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGTGTGATTGTTTTTT	6793	False	NA	-7	True	AATAAA	-12	NA	100603277	100595577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599812_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
ENSMUSG00000020918.15_5	chr11	-	3212	18	FSM	ENSMUSG00000020918.15	ENSMUST00000153526.8	2946	18	-271	5	5	-5	multi-exon	FALSE	canonical	3	22	junction_12	124.621058832359	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGATTGTTTTTTG	6800	False	NA	-6	True	AATAAA	-13	NA	100603270	100595576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599809_100599901_100600004_100600208_100600316_100601075_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
ENSMUSG00000020919.12_12	chr11	-	1919	1	ISM	ENSMUSG00000020919.12	ENSMUST00000107358.9	5213	19	39877	2	39877	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTGAGTCCTGTTTCCT	NA	False	NA	-2	True	AATAAA	-19	NA	100673477	100671558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100671600_100673500
ENSMUSG00000020919.12_2	chr11	-	4887	19	FSM	ENSMUSG00000020919.12	ENSMUST00000004143.3	5062	19	167	8	-19	-8	multi-exon	FALSE	canonical	3	41	junction_6	7.16386680880661	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACAATATTGAGTCCTG	NA	False	NA	-8	True	AATAAA	-13	NA	100741383	100671564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100674049_100674497_100674603_100675078_100675131_100678034_100678206_100679194_100679326_100679492_100679588_100681572_100681780_100685369_100685463_100687244_100687368_100687443_100687532_100687889_100688070_100688471_100688628_100689059_100689212_100689416_100689548_100692232_100692408_100693264_100693355_100695695_100695853_100699221_100699360_100741224
ENSMUSG00000020919.12_9	chr11	-	3532	10	ISM	ENSMUSG00000020919.12	ENSMUST00000107358.9	5213	19	25844	4	25844	-4	3prime_fragment	TRUE	canonical	3	41	junction_6	8.22072058359729	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATATTGAGTCCTGTTTC	4946	False	NA	-4	True	AATAAA	-17	NA	100687510	100671560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_100674049_100674497_100674603_100675078_100675131_100678034_100678206_100679194_100679326_100679492_100679588_100681572_100681780_100685369_100685463_100687244_100687368_100687443
ENSMUSG00000020921.7_0	chr11	-	1544	4	FSM	ENSMUSG00000020921.7	ENSMUST00000021296.7	1574	4	25	5	-24	-5	multi-exon	FALSE	canonical	3	250	junction_3	22.1710521977545	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACATTGTGTCTTTGCTTC	4490	False	NA	-5	True	AATAAA	-11	NA	102047205	102043376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102044421_102045382_102045530_102046549_102046731_102047033
ENSMUSG00000020921.7_5	chr11	-	1591	4	NIC	ENSMUSG00000020921.7	novel	1574	4	NA	NA	-7	-5	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	131.230924539742	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACATTGTGTCTTTGCTTC	4507	False	NA	-5	True	AATAAA	-11	NA	102047188	102043376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_102044421_102045382_102045530_102046549_102046731_102046969
ENSMUSG00000020921.7_6	chr11	-	936	1	ISM	ENSMUSG00000020921.7	ENSMUST00000021296.7	1574	4	2916	7	2859	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACATTGTGTCTTTGCT	7381	False	NA	-7	True	AATAAA	-9	NA	102044314	102043378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102043400_102044300
ENSMUSG00000020922.12_0	chr11	-	2203	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	49	4	10	-4	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	1166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTGATGTCTCAGGTTT	6405	False	NA	-5	True	AATAAA	-19	NA	102076073	102053326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
ENSMUSG00000020922.12_2	chr11	-	1380	1	ISM	ENSMUSG00000020922.12	ENSMUST00000107156.9	2015	4	21350	3	19002	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGATGTCTCAGGTTTG	NA	False	NA	-4	True	AATAAA	-20	NA	102054705	102053325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102053300_102054700
ENSMUSG00000020923.18_1	chr11	-	3232	20	FSM	ENSMUSG00000020923.18	ENSMUST00000079589.11	3286	20	-16	70	8	-1	multi-exon	FALSE	canonical	3	503	junction_14	97.0817686596932	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATCTCGGCTGCCGTCTCT	9145	False	NA	-10	True	NA	NA	NA	102207522	102196819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
ENSMUSG00000020923.18_17	chr11	-	3018	20	NIC	ENSMUSG00000020923.18	novel	2936	21	NA	NA	297	-3	combination_of_known_junctions	FALSE	canonical	3	106	junction_19	210.872137020862	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGATCTCGGCTGCCGTCT	8658	False	NA	-12	True	NA	NA	NA	102210271	102196821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102210149
ENSMUSG00000020923.18_18	chr11	-	3013	20	FSM	ENSMUSG00000020923.18	ENSMUST00000178839.8	4580	20	134	1433	134	-1	multi-exon	FALSE	canonical	3	130	junction_19	207.277671834178	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATCTCGGCTGCCGTCTCT	9141	False	NA	-10	True	NA	NA	NA	102209788	102196819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
ENSMUSG00000020923.18_20	chr11	-	3125	21	FSM	ENSMUSG00000020923.18	ENSMUST00000174302.8	4692	21	134	1433	134	0	multi-exon	FALSE	canonical	3	130	junction_20	166.063624855054	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTCGGCTGCCGTCTCTG	9141	False	NA	-9	True	NA	NA	NA	102209788	102196818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
ENSMUSG00000020923.18_23	chr11	-	3124	19	FSM	ENSMUSG00000020923.18	ENSMUST00000107115.8	3199	19	6	69	6	0	multi-exon	FALSE	canonical	3	144	junction_13	159.309621666601	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTCGGCTGCCGTCTCTG	9143	False	NA	-9	True	NA	NA	NA	102207524	102196818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
ENSMUSG00000020923.18_24	chr11	-	3094	20	FSM	ENSMUSG00000020923.18	ENSMUST00000107117.9	3258	20	95	69	95	0	multi-exon	FALSE	canonical	3	90	junction_19	213.309601634771	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTCGGCTGCCGTCTCTG	8065	False	NA	-9	True	NA	NA	NA	102208602	102196818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102208407
ENSMUSG00000020923.18_26	chr11	-	3141	21	FSM	ENSMUSG00000020923.18	ENSMUST00000173870.8	2936	21	287	-492	287	-1	multi-exon	FALSE	canonical	3	106	junction_20	170.388167136101	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATCTCGGCTGCCGTCTCT	8648	False	NA	-10	True	NA	NA	NA	102210281	102196819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102210149
ENSMUSG00000020923.18_4	chr11	-	3230	21	FSM	ENSMUSG00000020923.18	ENSMUST00000107123.10	2759	21	-166	-305	70	0	multi-exon	FALSE	canonical	3	90	junction_20	173.298954122637	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTCGGCTGCCGTCTCTG	8040	False	NA	-9	True	NA	NA	NA	102208627	102196818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102208407
ENSMUSG00000020925.17_0	chr11	-	2301	5	FSM	ENSMUSG00000020925.17	ENSMUST00000092569.13	2366	5	63	2	15	0	multi-exon	FALSE	canonical	0	0	junction_2	239.593405585379	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTCTTCTGTCTTGTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	102588545	102575513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102577323_102579626_102579686_102581026_102581163_102582936_102583025_102588336
ENSMUSG00000020925.17_1	chr11	-	1212	1	ISM	ENSMUSG00000020925.17	ENSMUST00000092569.13	2366	5	11883	2	11637	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTCTTCTGTCTTGTTCT	2802	False	NA	-6	True	AATAAA	-14	NA	102576725	102575513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102575500_102576700
ENSMUSG00000020925.17_9	chr11	-	2239	4	FSM	ENSMUSG00000020925.17	ENSMUST00000124869.8	407	4	-180	-1652	18	0	multi-exon	FALSE	non_canonical	0	0	junction_1	267.304237818175	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTCTTCTGTCTTGTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	102588542	102575513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102577323_102581026_102581163_102582936_102583025_102588336
ENSMUSG00000020926.17_0	chr11	+	5270	26	NIC	ENSMUSG00000020926.17	novel	5102	26	NA	NA	-6	-16	intron_retention	FALSE	canonical	3	16	junction_1	5.06754378372797	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAGCTCACACCAACCCA	NA	False	NA	16	True	ATTAAA	-27	NA	102652258	102671072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102652511_102652973_102653159_102660719_102660797_102660946_102661014_102662060_102662147_102662260_102662337_102662562_102662808_102662870_102662939_102663280_102663356_102663437_102663510_102663660_102663828_102664219_102664305_102664402_102664494_102664600_102664653_102665091_102665192_102665267_102665340_102665457_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
ENSMUSG00000020926.17_1	chr11	+	5203	25	NIC	ENSMUSG00000020926.17	novel	5102	26	NA	NA	-16	-7	intron_retention	TRUE	canonical	2	11	junction_6	5.71896819559457	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCAACCCATGTCTCTCC	NA	False	NA	25	True	ATTAAA	-36	NA	102652248	102671081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102652511_102652973_102653159_102660719_102660797_102660946_102661014_102662060_102662147_102662260_102662337_102662740_102662808_102662870_102662939_102663280_102663356_102663437_102663510_102663660_102663828_102664219_102664305_102664402_102664494_102664600_102664653_102665091_102665192_102665267_102665340_102665457_102665551_102665856_102665938_102666475_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
ENSMUSG00000020926.17_10	chr11	+	4792	25	ISM	ENSMUSG00000020926.17	ENSMUST00000103081.10	4620	27	766	7	19	-7	intron_retention	FALSE	canonical	2	11	junction_5	5.47912705942592	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCAACCCATGTCTCTCC	NA	False	NA	25	True	ATTAAA	-36	NA	102653030	102671081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102653159_102660719_102660797_102660946_102661014_102662060_102662147_102662260_102662337_102662740_102662808_102662870_102662939_102663280_102663356_102663437_102663510_102663660_102663828_102664219_102664305_102664402_102664494_102664600_102664653_102665091_102665192_102665267_102665340_102665457_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
ENSMUSG00000020926.17_13	chr11	+	2602	14	ISM	ENSMUSG00000020926.17	ENSMUST00000103081.10	4620	27	12136	1231	-506	564	intron_retention	FALSE	canonical	3	24	junction_2	2.59722200248217	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGAAGGGTGATTCTGG	NA	False	NA	13	True	AATAAA	-17	NA	102664400	102669857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102664494_102664600_102664653_102665091_102665192_102665267_102665340_102665457_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
ENSMUSG00000020926.17_14	chr11	+	3774	11	NIC	ENSMUSG00000020926.17	novel	5102	26	NA	NA	4	-4	intron_retention	FALSE	canonical	2	2	junction_10	8.48763806956918	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACCCATGTCTCTCCTCT	NA	False	NA	28	True	ATTAAA	-39	NA	102664910	102671084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102665192_102665267_102665340_102665457_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102668456
ENSMUSG00000020926.17_15	chr11	+	2761	11	NIC	ENSMUSG00000020926.17	novel	5102	26	NA	NA	1	566	intron_retention	FALSE	canonical	3	24	junction_1	2.46779253585061	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAAGGGTGATTCTGGGG	NA	False	NA	15	True	AATAAA	-19	NA	102664907	102669859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102665192_102665267_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
ENSMUSG00000020926.17_16	chr11	+	3480	10	ISM	ENSMUSG00000020926.17	ENSMUST00000103081.10	4620	27	13222	7	544	-7	intron_retention	FALSE	canonical	3	26	junction_9	1.88561808316413	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCAACCCATGTCTCTCC	NA	False	NA	25	True	ATTAAA	-36	NA	102665486	102671081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
ENSMUSG00000020926.17_19	chr11	+	3213	6	ISM	ENSMUSG00000020926.17	ENSMUST00000103081.10	4620	27	14629	12	-486	-12	intron_retention	FALSE	canonical	3	26	junction_5	2.13541565040626	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACACCAACCCATGTC	1271	False	NA	20	True	ATTAAA	-31	NA	102666893	102671076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
ENSMUSG00000020926.17_20	chr11	+	2194	1	NIC	ENSMUSG00000020926.17	novel	4620	27	NA	NA	1508	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCAACCCATGTCTCTCC	3265	False	NA	25	True	ATTAAA	-36	NA	102668887	102671081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102668900_102671100
ENSMUSG00000020926.17_4	chr11	+	3877	26	FSM	ENSMUSG00000020926.17	ENSMUST00000068150.7	5102	26	-3	1228	-3	567	multi-exon	FALSE	canonical	2	11	junction_6	5.6661803712907	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGGGTGATTCTGGGGC	NA	False	NA	16	True	AATAAA	-20	NA	102652261	102669860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102652511_102652973_102653159_102660719_102660797_102660946_102661014_102662060_102662147_102662260_102662337_102662740_102662808_102662870_102662939_102663280_102663356_102663437_102663510_102663660_102663828_102664219_102664305_102664402_102664494_102664600_102664653_102665091_102665192_102665267_102665340_102665457_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
ENSMUSG00000020926.17_42	chr11	+	3618	12	ISM	ENSMUSG00000020926.17	ENSMUST00000103081.10	4620	27	12892	5	214	-5	intron_retention	FALSE	canonical	3	24	junction_1	2.36713028478028	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCCATGTCTCTCCTC	NA	False	NA	27	True	ATTAAA	-38	NA	102665156	102671083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102665192_102665267_102665340_102665457_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
ENSMUSG00000020929.15_0	chr11	-	3298	28	FSM	ENSMUSG00000020929.15	ENSMUST00000021306.14	3324	28	21	5	-11	-1	multi-exon	TRUE	canonical	3	142	junction_26	264.162864923118	3076	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTGCCTTGGTTTGCTG	8487	False	NA	-10	True	TATAAA	-17	NA	102771772	102729303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
ENSMUSG00000020935.9_0	chr11	-	1692	5	FSM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	44	8	44	-6	multi-exon	FALSE	canonical	3	1121	junction_2	32.0965340808007	1346	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTCCACTGAATTCCA	8237	False	NA	-13	True	NA	NA	NA	102907950	102884880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
ENSMUSG00000020936.9_1	chr11	+	1840	12	FSM	ENSMUSG00000020936.9	ENSMUST00000021314.8	4861	12	212	2809	-27	-2809	multi-exon	TRUE	canonical	3	928	junction_6	43.300411312535	1207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATAAATATTCTAAATAT	NA	False	NA	12	True	AATAAA	-18	NA	102919383	102956929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
ENSMUSG00000020936.9_42	chr11	+	2475	1	ISM	ENSMUSG00000020936.9	ENSMUST00000021314.8	4861	12	38090	2	37851	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTCTCTCCTGGTGTTC	NA	False	NA	7	True	AATAAA	-14	NA	102957261	102959736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102957300_102959700
ENSMUSG00000020937.15_1	chr11	-	2981	15	FSM	ENSMUSG00000020937.15	ENSMUST00000103077.2	3023	15	25	17	-15	-17	multi-exon	FALSE	canonical	2	10	junction_14	6.65168384389875	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGTAAAGAAA	9434	False	NA	NA	False	NA	NA	NA	102992459	102961146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102961756_102961835_102961986_102962080_102962217_102962466_102962634_102964553_102964671_102965384_102965536_102965682_102965830_102967539_102967693_102968307_102968453_102968586_102968789_102969064_102969294_102970365_102970496_102971012_102971242_102971329_102971492_102992205
ENSMUSG00000020937.15_14	chr11	-	2238	12	ISM	ENSMUSG00000020937.15	ENSMUST00000103077.2	3023	15	22083	21	-1281	-21	3prime_fragment	FALSE	canonical	3	17	junction_10	5.74240425358318	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTTAAAAAAAAAAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	102970401	102961150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102961756_102961835_102961986_102962080_102962217_102962466_102962634_102964553_102964671_102965384_102965536_102965682_102965830_102967539_102967693_102968307_102968453_102968586_102968789_102969064_102969294_102970365
ENSMUSG00000020937.15_15	chr11	-	2391	13	ISM	ENSMUSG00000020937.15	ENSMUST00000103077.2	3023	15	21430	4	-1934	-4	3prime_fragment	FALSE	canonical	3	17	junction_10	5.87130498460285	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAAGTGTACCTTTC	NA	False	NA	NA	False	AAAAAG	-2	NA	102971054	102961133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102961756_102961835_102961986_102962080_102962217_102962466_102962634_102964553_102964671_102965384_102965536_102965682_102965830_102967539_102967693_102968307_102968453_102968586_102968789_102969064_102969294_102970365_102970496_102971012
ENSMUSG00000020937.15_2	chr11	-	515	1	ISM	ENSMUSG00000020937.15	ENSMUST00000128650.8	1952	11	7459	17	915	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGTAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	102961661	102961146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102961100_102961700
ENSMUSG00000020937.15_3	chr11	-	1391	7	ISM	ENSMUSG00000020937.15	ENSMUST00000128650.8	1952	11	3377	17	-3167	-17	3prime_fragment	FALSE	canonical	3	18	junction_6	5.67646212197547	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGTAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	102965743	102961146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102961756_102961835_102961986_102962080_102962217_102962466_102962634_102964553_102964671_102965384_102965536_102965682
ENSMUSG00000020940.14_0	chr11	-	340	2	ISM	ENSMUSG00000020940.14	ENSMUST00000021323.11	1199	10	9064	2	9038	1	3prime_fragment	FALSE	canonical	3	22	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGGCTGCGCCTAGTGG	NA	False	NA	NA	False	AGTAAA	-15	NA	103090310	103089771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103089945_103090143
ENSMUSG00000020941.8_0	chr11	-	4169	16	FSM	ENSMUSG00000020941.8	ENSMUST00000021324.3	4246	16	73	4	73	-4	multi-exon	FALSE	canonical	1	2	junction_13	1.87853370714738	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGATGGGTGTTTGTAGGCT	NA	False	NA	NA	False	AATAAA	-11	NA	103158225	103110591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_103112016_103112324_103112426_103115071_103115217_103115859_103115967_103116115_103116449_103117812_103117964_103118357_103118522_103121157_103121263_103121857_103121990_103122182_103122313_103128323_103128462_103129757_103130379_103130457_103130669_103131862_103131933_103132940_103133216_103158163
ENSMUSG00000020941.8_6	chr11	-	2743	8	ISM	ENSMUSG00000020941.8	ENSMUST00000021324.3	4246	16	36819	8	-8806	-8	3prime_fragment	FALSE	canonical	1	3	junction_4	2.18529407725405	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACGATGGGTGTTTGTA	NA	False	NA	NA	False	AATAAA	-7	NA	103121479	103110595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103112016_103112324_103112426_103115071_103115217_103115859_103115967_103116115_103116449_103117812_103117964_103118357_103118522_103121157
ENSMUSG00000020946.14_0	chr11	-	3049	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	203	14	-1	-14	multi-exon	TRUE	canonical	3	264	junction_1	54.6867442804927	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACTTTAAAGAAGCACTT	NA	False	NA	-12	True	AATAAA	-17	NA	103588521	103567688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUSG00000020946.14_1	chr11	-	2105	1	ISM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	18936	9	18732	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAGAAGCACTTGGCAT	NA	False	NA	-7	True	AATAAA	-22	NA	103569788	103567683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103567700_103569800
ENSMUSG00000020946.14_2	chr11	-	2912	5	FSM	ENSMUSG00000020946.14	ENSMUST00000107013.3	1044	5	-5	-1863	-1	-14	multi-exon	FALSE	canonical	3	79	junction_1	134.545531326759	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACTTTAAAGAAGCACTT	NA	False	NA	-12	True	AATAAA	-17	NA	103588525	103567688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_103570224_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUSG00000020946.14_9	chr11	-	2981	5	FSM	ENSMUSG00000020946.14	ENSMUST00000145265.2	917	5	5	-2069	1	-15	multi-exon	FALSE	canonical	3	13	junction_4	142.958910180513	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAACTTTAAAGAAGCACT	NA	False	NA	-13	True	AATAAA	-16	NA	103588519	103567689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103588455
ENSMUSG00000020948.10_0	chr12	-	2877	1	ISM	ENSMUSG00000020948.10	ENSMUST00000222508.2	6459	5	23814	11	21650	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTAAATTTGTATCA	NA	False	NA	-15	True	NA	NA	NA	64988494	64985617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_64985600_64988500
ENSMUSG00000020948.10_1	chr12	-	5610	4	ISM	ENSMUSG00000020948.10	ENSMUST00000222508.2	6459	5	8517	3	6353	-3	3prime_fragment	FALSE	canonical	3	14	junction_1	3.29983164553722	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTGTATCATGTAATCA	NA	False	NA	-7	True	NA	NA	NA	65003791	64985609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_64990388_64996787_64996997_64998149_64998594_65003612
ENSMUSG00000020948.10_2	chr12	-	6425	5	FSM	ENSMUSG00000020948.10	ENSMUST00000222508.2	6459	5	23	11	2	-11	multi-exon	FALSE	canonical	3	14	junction_1	2.9474565306379	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTAAATTTGTATCA	NA	False	NA	-15	True	NA	NA	NA	65012285	64985617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_64990388_64996787_64996997_64998149_64998594_65003612_65004512_65012182
ENSMUSG00000020948.10_3	chr12	-	5106	3	ISM	ENSMUSG00000020948.10	ENSMUST00000222508.2	6459	5	14020	23	11856	-23	3prime_fragment	FALSE	canonical	3	14	junction_1	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAACTGAAAAATGT	NA	False	NA	-27	True	NA	NA	NA	64998288	64985629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_64990388_64996787_64996997_64998149
ENSMUSG00000020948.10_4	chr12	-	2260	2	FSM	ENSMUSG00000020948.10	ENSMUST00000221957.2	1732	2	1	-529	1	529	multi-exon	FALSE	canonical	3	18	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCAGAAAAATGGCCT	NA	False	NA	NA	False	ATTAAA	-19	NA	65012286	65002355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_65004512_65012182
ENSMUSG00000020948.10_7	chr12	-	4812	2	ISM	ENSMUSG00000020948.10	ENSMUST00000222508.2	6459	5	15487	3	13323	-3	3prime_fragment	FALSE	canonical	3	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTGTATCATGTAATCA	NA	False	NA	-7	True	NA	NA	NA	64996821	64985609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_64990388_64996787
ENSMUSG00000020949.10_1	chr12	-	948	7	FSM	ENSMUSG00000020949.10	ENSMUST00000021332.10	1022	7	62	12	-16	0	multi-exon	FALSE	canonical	3	9641	junction_1	417.22073161444	2875	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTGACTTATTTATTGT	NA	False	NA	-14	True	AATAAA	-17	NA	65120719	65109209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
ENSMUSG00000020950.11_0	chr12	+	2936	1	FSM	ENSMUSG00000020950.11	ENSMUST00000179669.3	3973	1	1037	0	913	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATCTTGATATTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	49430702	49433638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_49430700_49433600
ENSMUSG00000020952.11_0	chr12	+	2091	25	FSM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	-2	7	-2	0	multi-exon	FALSE	canonical	3	358	junction_5	42.0133700610757	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATAACAGCTTATTCTT	NA	False	NA	8	True	AATAAA	-8	NA	51424360	51496877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491766_51491801_51492453_51492520_51494354_51494424_51496689
ENSMUSG00000020952.11_2	chr12	+	2752	14	FSM	ENSMUSG00000020952.11	ENSMUST00000219434.2	2749	14	-3	0	-3	0	multi-exon	TRUE	canonical	3	21	junction_13	120.151925523899	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAACATTTTTTAAGATT	NA	False	NA	NA	False	ATTAAA	-15	NA	51424359	51463998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462405
ENSMUSG00000020953.18_0	chr12	+	2052	12	FSM	ENSMUSG00000020953.18	ENSMUST00000085412.7	2456	12	-32	436	-16	-436	multi-exon	TRUE	canonical	0	0	junction_1	2.34608870919344	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCACTGTTCCCTCTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	51640107	51652108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_51640189_51640387_51640441_51640520_51640575_51642117_51642275_51643226_51643361_51643797_51643861_51644810_51644856_51644934_51645083_51648596_51648701_51649429_51649657_51649978_51650496_51651639
ENSMUSG00000020954.17_0	chr12	-	3924	17	NIC	ENSMUSG00000020954.17	novel	3046	18	NA	NA	0	1009	combination_of_known_splicesites	FALSE	canonical	3	58	junction_9	80.2484423524843	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTTGCTCTTGGCCAC	NA	False	NA	-5	True	AATAAA	-17	NA	51738680	51655405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_51657056_51657142_51657230_51666596_51666705_51668562_51668704_51669958_51670127_51673892_51674015_51674295_51674344_51674487_51674664_51676156_51676291_51689886_51689998_51694776_51694919_51696886_51697014_51699454_51699629_51702184_51702267_51707933_51708008_51708392_51708497_51738204
ENSMUSG00000020954.17_1	chr12	-	3820	16	FSM	ENSMUSG00000020954.17	ENSMUST00000169503.4	2791	16	-8	-1021	-8	1008	multi-exon	FALSE	canonical	3	154	junction_9	54.1091078798713	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGTTGCTCTTGGCCA	NA	False	NA	-6	True	AATAAA	-16	NA	51738688	51655406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_51657056_51657142_51657230_51666596_51666705_51668562_51668704_51669958_51670127_51673892_51674015_51674295_51674344_51674487_51674664_51676156_51676291_51694776_51694919_51696886_51697014_51699454_51699629_51702184_51702267_51707933_51708008_51708392_51708497_51738204
ENSMUSG00000020954.17_6	chr12	-	4063	18	FSM	ENSMUSG00000020954.17	ENSMUST00000013130.15	3046	18	-11	-1006	-1	1006	multi-exon	FALSE	canonical	3	65	junction_9	90.4848149144585	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTATGTTGCTCTTGGC	NA	False	NA	-8	True	AATAAA	-14	NA	51738681	51655408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_51657056_51657142_51657230_51666596_51666705_51668562_51668704_51669958_51670127_51673892_51674015_51674295_51674344_51674487_51674664_51676156_51676291_51680361_51680503_51689886_51689998_51694776_51694919_51696886_51697014_51699454_51699629_51702184_51702267_51707933_51708008_51708392_51708497_51738204
ENSMUSG00000020955.10_0	chr12	+	1053	6	FSM	ENSMUSG00000020955.10	ENSMUST00000021338.10	1035	6	-19	1	-15	-1	multi-exon	FALSE	canonical	3	33	junction_1	14.8458748479165	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGTGACGTTTGAGTGA	NA	False	NA	NA	False	AATAAA	-16	NA	51737800	51785714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_51738098_51763724_51763934_51767418_51767506_51769762_51769832_51777670_51777683_51785335
ENSMUSG00000020955.10_2	chr12	+	1052	5	NIC	ENSMUSG00000020955.10	novel	1035	6	NA	NA	-26	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	28.6749019178793	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGTGACGTTTGAGTGA	NA	False	NA	NA	False	AATAAA	-16	NA	51737789	51785714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_51738098_51763724_51763934_51767418_51767506_51769762_51769832_51785335
ENSMUSG00000020956.15_0	chr12	-	1163	3	FSM	ENSMUSG00000020956.15	ENSMUST00000021339.8	2564	3	2	1399	2	-1399	multi-exon	FALSE	canonical	3	170	junction_1	5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAACTCCAGTTTTTCTT	NA	False	NA	-3	True	AATAAA	-14	NA	52053282	52045688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_52046657_52051661_52051732_52053157
ENSMUSG00000020956.15_1	chr12	-	1366	3	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	9	-1399	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	74	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAACTCCAGTTTTTCTT	NA	False	NA	-3	True	AATAAA	-14	NA	52053275	52045688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_52046657_52051661_52051732_52052947
ENSMUSG00000020961.16_0	chr12	-	669	1	ISM	ENSMUSG00000020961.16	ENSMUST00000052969.15	9896	7	152752	7	80290	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGACATTGCAGTGTTT	NA	False	NA	-8	True	AATAAA	-11	NA	91600458	91599789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_91599800_91600500
ENSMUSG00000020961.16_1	chr12	-	3469	7	NIC	ENSMUSG00000020961.16	novel	9896	7	NA	NA	-22	2256	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	11.1753697428268	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCATTTCTCTGGGCCT	121	False	NA	-2	True	TATAAA	-17	NA	91745933	91606060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_91606580_91608494_91608698_91614005_91615845_91680700_91680899_91707244_91707521_91710379_91710653_91745772
ENSMUSG00000020961.16_2	chr12	-	2986	3	ISM	ENSMUSG00000020961.16	ENSMUST00000052969.15	9896	7	137927	5292	65465	3242	3prime_fragment	FALSE	canonical	3	26	junction_2	3	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAGCGACTCGAGCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	91615283	91605074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_91606580_91608494_91608698_91614005
ENSMUSG00000020961.16_4	chr12	-	2730	4	NIC	ENSMUSG00000020961.16	novel	9896	7	NA	NA	27851	2256	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	9.7410927974683	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCATTTCTCTGGGCCT	NA	False	NA	-2	True	TATAAA	-17	NA	91652897	91606060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_91606580_91608494_91608698_91614005_91615845_91652728
ENSMUSG00000020961.16_6	chr12	-	1103	4	NIC	ENSMUSG00000020961.16	novel	1544	4	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	4.10960933531265	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATTTTGTGGTAATTTG	145	False	NA	NA	False	NA	NA	NA	91745909	91701825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_91702243_91707244_91707521_91710379_91710653_91745772
ENSMUSG00000020962.15_0	chr12	-	3105	1	ISM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	31639	4	31269	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTTCTTGTATTTTGCA	NA	False	NA	-4	True	AATAAA	-19	NA	91525144	91522039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_91522000_91525100
ENSMUSG00000020962.15_1	chr12	-	4780	3	ISM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	22366	4	21996	-4	3prime_fragment	FALSE	canonical	3	1040	junction_2	34.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTTCTTGTATTTTGCA	NA	False	NA	-4	True	AATAAA	-19	NA	91534417	91522039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_91526626_91529682_91529773_91534313
ENSMUSG00000020962.15_11	chr12	-	4111	4	ISM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	21798	965	21428	-965	3prime_fragment	FALSE	canonical	3	1040	junction_2	41.4487635521254	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTTCTTTAGATCAGTTC	NA	False	NA	NA	False	AATAAA	-18	NA	91534985	91523000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910
ENSMUSG00000020962.15_2	chr12	-	5448	7	ISM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	14251	6	13881	-6	3prime_fragment	FALSE	canonical	3	1018	junction_5	45.1319054427008	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCATTTCTTGTATTTTG	NA	False	NA	-6	True	AATAAA	-17	NA	91542532	91522041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357
ENSMUSG00000020962.15_4	chr12	-	5360	9	FSM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	50	654	50	-654	multi-exon	FALSE	canonical	3	931	junction_7	74.7277349783867	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTAATGTTGCT	-2	True	NA	NA	False	ATTAAA	-11	NA	91556733	91522689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91553473_91553576_91556308
ENSMUSG00000020964.15_0	chr12	-	3986	21	FSM	ENSMUSG00000020964.15	ENSMUST00000021347.12	6300	21	18	2296	0	304	multi-exon	FALSE	canonical	3	285	junction_17	38.6834589973544	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGTGTACATTTGTGTG	NA	False	NA	-10	True	NA	NA	NA	91815913	91775112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810038_91815732
ENSMUSG00000020964.15_3	chr12	-	3836	21	FSM	ENSMUSG00000020964.15	ENSMUST00000167466.2	5544	21	-10	1718	0	304	multi-exon	FALSE	canonical	3	89	junction_17	69.9646339231472	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGTGTACATTTGTGTG	NA	False	NA	-10	True	NA	NA	NA	91815913	91775112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799978_91799997_91808411_91808629_91809999_91810038_91815732
ENSMUSG00000020964.15_5	chr12	-	2817	1	ISM	ENSMUSG00000020964.15	ENSMUST00000021347.12	6300	21	40296	2	5099	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGTCTGGGCGTGTGCC	3501	False	NA	-26	True	AATAAA	-16	NA	91775635	91772818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_91772800_91775600
ENSMUSG00000020973.8_0	chr12	-	1340	3	FSM	ENSMUSG00000020973.8	ENSMUST00000021356.6	3390	3	1297	753	1297	-753	multi-exon	FALSE	canonical	3	240	junction_2	19	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACAGGTTGTTTGTGTTT	NA	False	NA	-3	True	AGTAAA	-15	NA	69243906	69236613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_69237169_69239581_69239726_69243265
ENSMUSG00000020974.7_0	chr12	-	1690	19	FSM	ENSMUSG00000020974.7	ENSMUST00000021359.7	1706	19	12	4	-4	-4	multi-exon	TRUE	canonical	3	369	junction_1	34.9372011570955	355	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTTCTACACATTGTA	NA	False	NA	-9	True	AATAAA	-16	NA	69274957	69248550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
ENSMUSG00000020978.11_0	chr12	+	1672	13	FSM	ENSMUSG00000020978.11	ENSMUST00000021362.5	1905	13	9	224	9	-224	multi-exon	TRUE	canonical	3	493	junction_10	56.6727937863977	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTACCTGTCTATTGTTAA	NA	False	NA	13	True	AATAAA	-13	NA	69343504	69357237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_69343922_69346989_69347070_69349097_69349216_69350307_69350424_69350654_69350737_69351317_69351402_69352401_69352483_69352556_69352616_69353963_69354074_69354391_69354465_69355731_69355820_69356760_69356814_69356926
ENSMUSG00000020982.10_2	chr12	-	3674	33	FSM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	12	1046	-4	0	multi-exon	TRUE	canonical	3	259	junction_6	33.0300526036517	605	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATAACACAAGAA	NA	False	NA	-30	True	NA	NA	NA	69403927	69358341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339_69359441_69361189_69361223_69363017_69363213_69363516_69363595_69364800_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
ENSMUSG00000020986.14_0	chr12	-	3629	20	FSM	ENSMUSG00000020986.14	ENSMUST00000021375.12	4109	20	74	406	74	-406	multi-exon	FALSE	canonical	3	521	junction_10	53.3728846882441	1196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTAGTTATTTTAAAATC	2752	False	NA	-9	True	AATAAA	-18	NA	59058729	59005574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
ENSMUSG00000020986.14_5	chr12	-	3624	20	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	74	-407	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_19	141.673300588795	101	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTTAGTTATTTTAAAAT	2752	False	NA	-10	True	AATAAA	-17	NA	59058729	59005575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054018_59058631
ENSMUSG00000020988.10_0	chr12	-	3292	10	FSM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	31	17	31	-17	multi-exon	FALSE	canonical	3	420	junction_5	64.6821287356699	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTTAATGTTTCTT	NA	False	NA	-17	True	AATAAA	-17	NA	69771616	69737223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69752574_69753897_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
ENSMUSG00000020988.10_1	chr12	-	4617	9	NIC	ENSMUSG00000020988.10	novel	3340	10	NA	NA	30	-17	intron_retention	FALSE	canonical	3	442	junction_4	59.9404652551179	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTTAATGTTTCTT	NA	False	NA	-17	True	AATAAA	-17	NA	69771617	69737223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
ENSMUSG00000020988.10_4	chr12	-	3085	8	NIC	ENSMUSG00000020988.10	novel	3340	10	NA	NA	40	-17	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	181.049998731887	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTTAATGTTTCTT	NA	False	NA	-17	True	AATAAA	-17	NA	69771607	69737223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69759395_69759528_69768085_69768238_69768851_69768968_69771427
ENSMUSG00000020988.10_9	chr12	-	1739	1	ISM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	32685	17	29999	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTTAATGTTTCTT	7378	False	NA	-17	True	AATAAA	-17	NA	69738962	69737223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_69737200_69739000
ENSMUSG00000020993.10_0	chr12	-	1191	6	FSM	ENSMUSG00000020993.10	ENSMUST00000021380.10	1255	6	23	41	-2	-5	multi-exon	FALSE	canonical	3	266	junction_5	16.4146276229466	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTACTTGAAAGTTTATT	NA	False	NA	-10	True	NA	NA	NA	59108224	59089918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097172_59098426_59098495_59107941
ENSMUSG00000020994.6_0	chr12	+	3274	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	66	145	7	-145	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGACTGTTTAAAATTAGT	NA	False	NA	8	True	AATAAA	-14	NA	59113735	59120639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
ENSMUSG00000020994.6_30	chr12	+	2045	1	ISM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	4925	145	4845	-145	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGACTGTTTAAAATTAGT	NA	False	NA	8	True	AATAAA	-14	NA	59118594	59120639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_59118600_59120600
ENSMUSG00000021000.18_2	chr12	+	2824	24	FSM	ENSMUSG00000021000.18	ENSMUST00000176464.8	4434	24	196	1414	1	-4	multi-exon	FALSE	canonical	3	371	junction_5	45.1017752679996	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAAAGTCTTGTTTGGTA	NA	False	NA	3	True	AATAAA	-11	NA	59178267	59236955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59191484_59191557_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
ENSMUSG00000021000.18_4	chr12	+	2752	23	FSM	ENSMUSG00000021000.18	ENSMUST00000170992.9	2785	23	29	4	1	-4	multi-exon	FALSE	canonical	3	90	junction_4	87.8376248945031	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAAAGTCTTGTTTGGTA	NA	False	NA	3	True	AATAAA	-11	NA	59178267	59236955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
ENSMUSG00000021003.11_0	chr12	-	1291	1	ISM	ENSMUSG00000021003.11	ENSMUST00000021390.9	3832	17	55865	10	12934	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATACAAATCTTTGAGAA	NA	False	NA	NA	False	NA	NA	NA	98169853	98168562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98168600_98169900
ENSMUSG00000021003.11_15	chr12	-	3111	12	ISM	ENSMUSG00000021003.11	ENSMUST00000021390.9	3832	17	13166	10	-2828	-10	3prime_fragment	FALSE	canonical	3	22	junction_3	6.01238391410416	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATACAAATCTTTGAGAA	NA	False	NA	NA	False	NA	NA	NA	98212552	98168562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98170347_98173652_98173730_98174969_98175134_98179240_98179419_98180591_98180743_98182509_98182597_98188858_98188949_98193426_98193555_98197674_98197800_98200500_98200657_98208900_98209032_98212512
ENSMUSG00000021003.11_2	chr12	-	3714	17	FSM	ENSMUSG00000021003.11	ENSMUST00000021390.9	3832	17	108	10	-4	-10	multi-exon	FALSE	canonical	3	22	junction_3	6.15648793956424	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATACAAATCTTTGAGAA	NA	False	NA	NA	False	NA	NA	NA	98225610	98168562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_98170347_98173652_98173730_98174969_98175134_98179240_98179419_98180591_98180743_98182509_98182597_98188858_98188949_98193426_98193555_98197674_98197800_98200500_98200657_98208900_98209032_98212512_98212552_98218268_98218409_98220423_98220538_98222885_98222950_98223130_98223200_98225393
ENSMUSG00000021003.11_6	chr12	-	2314	5	ISM	ENSMUSG00000021003.11	ENSMUST00000221063.2	1619	12	29021	-1491	2084	-11	3prime_fragment	FALSE	canonical	3	22	junction_3	3.90512483795333	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACATACAAATCTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	98180703	98168563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98170347_98173652_98173730_98174969_98175134_98179240_98179419_98180591
ENSMUSG00000021003.11_7	chr12	-	4543	17	NIC	ENSMUSG00000021003.11	novel	3832	17	NA	NA	-236	-10	combination_of_known_junctions	FALSE	canonical	1	2	junction_16	9.17686459255012	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATACAAATCTTTGAGAA	NA	False	NA	NA	False	NA	NA	NA	98225278	98168562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_98170347_98173652_98173730_98174969_98175134_98179240_98179419_98180591_98180743_98182509_98182597_98188858_98188949_98193426_98193555_98197674_98197800_98200500_98200657_98208900_98209032_98212512_98212552_98218268_98218409_98220423_98220538_98222885_98222950_98223130_98223200_98224232
ENSMUSG00000021007.15_0	chr12	+	1951	11	FSM	ENSMUSG00000021007.15	ENSMUST00000101146.4	1913	11	-38	0	2	0	multi-exon	FALSE	canonical	3	21	junction_2	15.3766056072203	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACATATTTATTAT	NA	False	NA	14	True	NA	NA	NA	98594417	98636071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_98594594_98598221_98598297_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ENSMUSG00000021007.15_1	chr12	+	2032	12	FSM	ENSMUSG00000021007.15	ENSMUST00000048402.12	2052	12	15	5	5	-2	multi-exon	FALSE	canonical	3	39	junction_2	12.115149999242	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAACACCACATATTTATT	NA	False	NA	12	True	NA	NA	NA	98594430	98636069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ENSMUSG00000021007.15_10	chr12	+	1873	11	ISM	ENSMUSG00000021007.15	ENSMUST00000048402.12	2052	12	3804	3	-1049	0	3prime_fragment	FALSE	canonical	3	39	junction_1	12.6491106406735	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACATATTTATTAT	NA	False	NA	14	True	NA	NA	NA	98598219	98636071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ENSMUSG00000021007.15_11	chr12	+	181	1	FSM	ENSMUSG00000021007.15	ENSMUST00000222378.2	1914	1	1734	-1	1734	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98601002	98601183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_98601000_98601200
ENSMUSG00000021007.15_12	chr12	+	1654	8	ISM	ENSMUSG00000021007.15	ENSMUST00000101146.4	1913	11	20150	0	-15298	0	3prime_fragment	FALSE	canonical	3	56	junction_2	7.49693815051539	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACATATTTATTAT	NA	False	NA	14	True	NA	NA	NA	98614605	98636071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ENSMUSG00000021007.15_13	chr12	+	1109	7	ISM	ENSMUSG00000021007.15	ENSMUST00000101146.4	1913	11	30422	3	-5026	-3	3prime_fragment	FALSE	canonical	3	56	junction_1	7.60847480700888	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAACACCACATATTTAT	NA	False	NA	11	True	NA	NA	NA	98624877	98636068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ENSMUSG00000021007.15_6	chr12	+	4402	11	NIC	ENSMUSG00000021007.15	novel	2052	12	NA	NA	2	0	intron_retention	FALSE	canonical	3	39	junction_2	12.6948808580467	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACATATTTATTAT	NA	False	NA	14	True	NA	NA	NA	98594417	98636071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ENSMUSG00000021007.15_7	chr12	+	2168	1	FSM	ENSMUSG00000021007.15	ENSMUST00000222195.2	2193	1	23	2	0	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98594448	98596616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_98594400_98596600
ENSMUSG00000021009.16_0	chr12	-	2569	5	ISM	ENSMUSG00000021009.16	ENSMUST00000223321.2	2957	6	1125	0	1125	0	3prime_fragment	FALSE	canonical	3	33	junction_1	8.73212459828649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCGTGTTCCTGTTGCA	NA	False	NA	0	True	ATTAAA	-15	NA	98648884	98643000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98644938_98645534_98645696_98646215_98646451_98646619_98646749_98648777
ENSMUSG00000021009.16_1	chr12	-	5757	19	FSM	ENSMUSG00000021009.16	ENSMUST00000170188.8	5562	19	-196	1	-196	0	multi-exon	FALSE	canonical	3	24	junction_6	7.37467304150739	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCGTGTTCCTGTTGCA	NA	False	NA	0	True	ATTAAA	-15	NA	98703860	98643000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_98644938_98645534_98645696_98646215_98646451_98646619_98646749_98648777_98649000_98649736_98649875_98654448_98655888_98659130_98659216_98659815_98659877_98665089_98665170_98666217_98666306_98670400_98670490_98671351_98671440_98675063_98675135_98675794_98675863_98677058_98677157_98681282_98681453_98699732_98700094_98703623
ENSMUSG00000021009.16_11	chr12	-	3434	7	ISM	ENSMUSG00000021009.16	ENSMUST00000085116.4	5696	19	45842	2	-5053	-2	3prime_fragment	FALSE	canonical	3	24	junction_6	10.2428837085396	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTTCGTGTTCCTGTTG	NA	False	NA	-2	True	ATTAAA	-13	NA	98655062	98643002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98644938_98645534_98645696_98646215_98646451_98646619_98646749_98648777_98649000_98649736_98649875_98654448
ENSMUSG00000021009.16_5	chr12	-	4571	11	ISM	ENSMUSG00000021009.16	ENSMUST00000085116.4	5696	19	34603	0	-16292	0	3prime_fragment	FALSE	canonical	3	24	junction_6	8.74128137060008	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCGTGTTCCTGTTGCA	NA	False	NA	0	True	ATTAAA	-15	NA	98666301	98643000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98644938_98645534_98645696_98646215_98646451_98646619_98646749_98648777_98649000_98649736_98649875_98654448_98655888_98659130_98659216_98659815_98659877_98665089_98665170_98666217
ENSMUSG00000021009.16_6	chr12	-	5693	19	FSM	ENSMUSG00000021009.16	ENSMUST00000085116.4	5696	19	1	2	1	-2	multi-exon	FALSE	canonical	3	8	junction_18	9.45636502606434	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTTCGTGTTCCTGTTG	NA	False	NA	-2	True	ATTAAA	-13	NA	98700903	98643002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_98644938_98645534_98645696_98646215_98646451_98646619_98646749_98648777_98649000_98649736_98649875_98654448_98655888_98659130_98659216_98659815_98659877_98665089_98665170_98666217_98666306_98670400_98670490_98671351_98671440_98675063_98675135_98675794_98675863_98677058_98677157_98681282_98681453_98699732_98700094_98700728
ENSMUSG00000021009.16_7	chr12	-	5618	18	ISM	ENSMUSG00000021009.16	ENSMUST00000085116.4	5696	19	713	0	-19	0	3prime_fragment	FALSE	canonical	3	24	junction_6	7.52435491952747	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCGTGTTCCTGTTGCA	NA	False	NA	0	True	ATTAAA	-15	NA	98700191	98643000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98644938_98645534_98645696_98646215_98646451_98646619_98646749_98648777_98649000_98649736_98649875_98654448_98655888_98659130_98659216_98659815_98659877_98665089_98665170_98666217_98666306_98670400_98670490_98671351_98671440_98675063_98675135_98675794_98675863_98677058_98677157_98681282_98681453_98699732
ENSMUSG00000021009.16_9	chr12	-	2307	3	ISM	ENSMUSG00000021009.16	ENSMUST00000223321.2	2957	6	3585	0	3585	0	3prime_fragment	FALSE	canonical	3	33	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCGTGTTCCTGTTGCA	NA	False	NA	0	True	ATTAAA	-15	NA	98646424	98643000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98644938_98645534_98645696_98646215
ENSMUSG00000021012.17_1	chr12	+	2608	17	FSM	ENSMUSG00000021012.17	ENSMUST00000110105.10	3514	17	0	906	0	0	multi-exon	FALSE	canonical	3	883	junction_12	209.53098667023	1372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCTGTTTAATATCAT	NA	False	NA	23	True	ATTAAA	-20	NA	98713247	98753106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98745366_98745527_98746306_98746540_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
ENSMUSG00000021012.17_14	chr12	+	2138	14	FSM	ENSMUSG00000021012.17	ENSMUST00000057000.17	3046	14	8	900	2	0	multi-exon	FALSE	canonical	3	91	junction_9	361.05984686441	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCTGTTTAATATCAT	NA	False	NA	23	True	ATTAAA	-20	NA	98713249	98753106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
ENSMUSG00000021012.17_3	chr12	+	2215	15	FSM	ENSMUSG00000021012.17	ENSMUST00000110104.10	3146	15	25	906	0	0	multi-exon	FALSE	canonical	3	422	junction_10	269.986630432407	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCTGTTTAATATCAT	NA	False	NA	23	True	ATTAAA	-20	NA	98713247	98753106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
ENSMUSG00000021012.17_4	chr12	+	2596	17	NIC	ENSMUSG00000021012.17	novel	3514	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_14	355.505532437612	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCTGTTTAATATCAT	NA	False	NA	23	True	ATTAAA	-20	NA	98713247	98753106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98745366_98745527_98746306_98746540_98749840_98749962_98751174_98751312_98751588_98751666_98751893_98752001_98752833
ENSMUSG00000021013.17_0	chr12	+	2254	14	FSM	ENSMUSG00000021013.17	ENSMUST00000085109.10	2272	14	18	0	18	0	multi-exon	FALSE	canonical	3	15	junction_7	3.54347470962493	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACTTTTCACTTTTCA	NA	False	NA	NA	False	AATAAA	-10	NA	98886850	98949491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_98887043_98908476_98908598_98909561_98909626_98909720_98909881_98910083_98910174_98912827_98912873_98923539_98923626_98927660_98927749_98930755_98930867_98940900_98941041_98942235_98942411_98942685_98942809_98946060_98946145_98948716
ENSMUSG00000021018.9_0	chr16	+	803	5	FSM	ENSMUSG00000021018.9	ENSMUST00000021405.8	950	5	144	3	-21	0	multi-exon	FALSE	canonical	3	628	junction_4	109.533955922353	288	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCTTCTCCATTGTCAT	1048	False	NA	12	True	ATTAAA	-13	NA	20536558	20541014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659
ENSMUSG00000021022.10_5	chr12	-	1482	13	ISM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	332	2521	-4	-2521	3prime_fragment	FALSE	canonical	3	216	junction_9	34.6025047262959	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAACACAGCAAATATCTTG	NA	False	NA	NA	False	AATAAA	-18	NA	55349451	55328296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378
ENSMUSG00000021022.10_6	chr12	-	1665	14	NNC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	12	-2521	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_13	69.7240545793362	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAACACAGCAAATATCTTG	NA	False	NA	NA	False	AATAAA	-18	NA	55349771	55328296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349717
ENSMUSG00000021022.10_7	chr12	-	1685	14	FSM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	13	2518	13	-2518	multi-exon	FALSE	canonical	3	69	junction_13	62.3614203298973	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGCAAATATCTTGCTT	NA	False	NA	NA	False	AATAAA	-21	NA	55349770	55328293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349699
ENSMUSG00000021023.15_0	chr12	+	2488	7	FSM	ENSMUSG00000021023.15	ENSMUST00000021411.15	3122	7	626	8	2	-8	multi-exon	FALSE	canonical	3	113	junction_3	136.205726751851	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTTTTCAGTTTAGTTG	NA	False	NA	11	True	AATAAA	-12	NA	55350047	55429273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
ENSMUSG00000021023.15_3	chr12	+	2203	8	NIC	ENSMUSG00000021023.15	novel	2250	8	NA	NA	9	-8	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	145.251365513972	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTTTTCAGTTTAGTTG	NA	False	NA	11	True	AATAAA	-12	NA	55350054	55429273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_55350123_55350400_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
ENSMUSG00000021023.15_6	chr12	+	2513	2	NIC	ENSMUSG00000021023.15	novel	3122	7	NA	NA	73908	-11	intron_retention	FALSE	canonical	3	425	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAACACTTTTCAGTTTAG	NA	False	NA	8	True	AATAAA	-9	NA	55423978	55429270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_55426263_55429041
ENSMUSG00000021023.15_7	chr12	+	499	3	ISM	ENSMUSG00000021023.15	ENSMUST00000183654.2	943	7	73906	25	73906	-8	3prime_fragment	FALSE	canonical	3	389	junction_1	18	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTTTTCAGTTTAGTTG	NA	False	NA	11	True	AATAAA	-12	NA	55423976	55429273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_55424048_55426066_55426263_55429041
ENSMUSG00000021024.15_0	chr12	+	958	7	FSM	ENSMUSG00000021024.15	ENSMUST00000021412.9	1042	7	81	3	61	-3	multi-exon	FALSE	canonical	3	2423	junction_5	124.008960249743	975	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGCGGTGCATCCTGTC	NA	False	NA	13	True	AATAAA	-14	NA	55445640	55465236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_55445777_55454253_55454349_55454786_55454869_55456911_55457068_55458971_55459151_55461188_55461284_55465021
ENSMUSG00000021025.9_0	chr12	-	1521	6	FSM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	52	5	52	-5	multi-exon	FALSE	canonical	3	201	junction_5	20.9914268214431	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAGCATTGTCCCGCTCG	NA	False	NA	-7	True	ATTAAA	-12	NA	55539380	55536199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
ENSMUSG00000021025.9_7	chr12	-	1385	5	ISM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	707	7	-130	-7	3prime_fragment	FALSE	canonical	3	207	junction_3	19.0984292547843	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACAGCATTGTCCCGCT	NA	False	NA	-9	True	ATTAAA	-10	NA	55538725	55536201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454
ENSMUSG00000021027.18_1	chr12	-	1913	1	NIC	ENSMUSG00000021027.18	novel	8841	40	NA	NA	7825	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTGTCCATGATCGTA	NA	False	NA	-11	True	AATAAA	-24	NA	55651597	55649684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_55649700_55651600
ENSMUSG00000021027.18_13	chr12	-	4070	18	ISM	ENSMUSG00000021027.18	ENSMUST00000085385.7	7901	41	113091	3	-10177	-3	3prime_fragment	FALSE	canonical	3	36	junction_8	27.0441136487218	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCCTGTCCATGATCG	NA	False	NA	-13	True	AATAAA	-22	NA	55754861	55649686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_55651054_55658857_55658889_55659418_55659544_55687368_55687497_55689109_55689269_55705832_55705989_55712337_55712462_55720237_55720310_55723188_55724051_55730691_55730876_55731271_55731407_55736543_55736613_55740139_55740251_55741931_55742041_55744623_55744683_55745546_55745673_55749219_55749349_55754737
ENSMUSG00000021027.18_23	chr12	-	6279	38	ISM	ENSMUSG00000021027.18	ENSMUST00000110687.8	7874	41	67	37684	-3	16552	5prime_fragment	FALSE	canonical	1	23	junction_19	22.64832612813	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCACTGATTCCATTGTA	NA	False	NA	NA	False	AATAAA	-17	NA	55867885	55687397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_55687497_55689109_55689269_55705832_55705989_55712337_55712462_55720237_55720310_55723188_55724051_55730691_55730876_55731271_55731407_55736543_55736613_55740139_55740251_55741931_55742041_55744623_55744683_55745546_55745673_55749219_55749349_55754737_55754894_55755778_55755878_55756298_55756493_55759418_55759572_55763746_55763924_55764877_55765095_55766368_55766494_55769558_55769727_55784995_55785158_55786116_55786355_55788218_55788349_55793900_55794050_55804710_55804846_55809324_55809523_55817403_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954_55833133_55834207_55834252_55837096_55837155_55841779_55841830_55842450_55842562_55867446
ENSMUSG00000021027.18_24	chr12	-	3642	21	FSM	ENSMUSG00000021027.18	ENSMUST00000219529.2	3581	21	-59	-2	27	2	multi-exon	FALSE	canonical	1	23	junction_2	17.649645888799	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTTTTCTTATTTTT	9974	False	NA	NA	False	ATTAAA	-14	NA	55867925	55759252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_55759572_55763746_55763924_55764877_55765095_55766368_55766494_55769558_55769727_55784995_55785158_55786116_55786355_55788218_55788349_55793900_55794050_55804710_55804846_55809324_55809523_55817403_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954_55833133_55834207_55834252_55837096_55837155_55841779_55841830_55842450_55842562_55867446
ENSMUSG00000021027.18_27	chr12	-	3077	17	ISM	ENSMUSG00000021027.18	ENSMUST00000219432.2	6631	42	-49	130500	21	-12561	5prime_fragment	FALSE	canonical	3	8	junction_1	22.1726182486417	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTCTCACAAGAGACAT	9968	False	NA	NA	False	ATTAAA	-15	NA	55867931	55781524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_55781960_55784995_55785158_55786116_55786355_55788218_55788349_55793900_55794050_55804710_55804846_55809324_55809523_55817403_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954_55833133_55834207_55834252_55837096_55837155_55841779_55841830_55842450_55842562_55867446
ENSMUSG00000021027.18_28	chr12	-	4794	10	ISM	ENSMUSG00000021027.18	ENSMUST00000219542.2	3426	17	90	45207	4	-45207	5prime_fragment	FALSE	canonical	3	76	junction_3	8.51143022320247	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTTTTGGTTGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	55867862	55814170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954_55833133_55834207_55834252_55837096_55837155_55841779_55841830_55842450_55842562_55867446
ENSMUSG00000021027.18_3	chr12	-	2632	9	ISM	ENSMUSG00000021027.18	ENSMUST00000085385.7	7901	41	144294	3	16910	-3	3prime_fragment	FALSE	canonical	3	36	junction_8	10.7579912158358	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCCTGTCCATGATCG	NA	False	NA	-13	True	AATAAA	-22	NA	55723658	55649686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_55651054_55658857_55658889_55659418_55659544_55687368_55687497_55689109_55689269_55705832_55705989_55712337_55712462_55720237_55720310_55723188
ENSMUSG00000021027.18_4	chr12	-	7896	41	FSM	ENSMUSG00000021027.18	ENSMUST00000085385.7	7901	41	2	3	2	-3	multi-exon	FALSE	canonical	1	23	junction_22	22.9185514376454	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCCTGTCCATGATCG	9949	False	NA	-13	True	AATAAA	-22	NA	55867950	55649686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_55651054_55658857_55658889_55659418_55659544_55687368_55687497_55689109_55689269_55705832_55705989_55712337_55712462_55720237_55720310_55723188_55724051_55730691_55730876_55731271_55731407_55736543_55736613_55740139_55740251_55741931_55742041_55744623_55744683_55745546_55745673_55749219_55749349_55754737_55754894_55755778_55755878_55756298_55756493_55759418_55759572_55763746_55763924_55764877_55765095_55766368_55766494_55769558_55769727_55784995_55785158_55786116_55786355_55788218_55788349_55793900_55794050_55804710_55804846_55809324_55809523_55817403_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954_55833133_55834207_55834252_55837096_55837155_55841779_55841830_55842450_55842562_55867446
ENSMUSG00000021028.9_1	chr12	-	1413	9	FSM	ENSMUSG00000021028.9	ENSMUST00000021416.9	1512	9	69	30	-4	-30	multi-exon	FALSE	canonical	3	215	junction_1	38.7193427113633	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTGACAAATGAATGT	NA	False	NA	NA	False	AATAAA	-3	NA	56392610	56375117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ENSMUSG00000021028.9_2	chr12	-	1407	9	NNC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	-3	-32	at_least_one_novel_splicesite	FALSE	canonical	3	94	junction_1	75.0598719356755	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAACTGACAAATGAAT	NA	False	NA	NA	False	AATAAA	-1	NA	56392609	56375119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_56375582_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ENSMUSG00000021033.12_4	chr12	+	1658	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	-4	2	-4	-2	multi-exon	FALSE	canonical	3	449	junction_5	40.5555175037873	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTTTGTCATGGAC	NA	False	NA	11	True	NA	NA	NA	87194487	87211495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
ENSMUSG00000021033.12_5	chr12	+	2958	8	NIC	ENSMUSG00000021033.12	novel	1656	9	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	476	junction_5	37.1054756947086	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTTTGTCATGGAC	NA	False	NA	11	True	NA	NA	NA	87194486	87211495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87208328_87208813_87208867_87209761_87209812_87210477
ENSMUSG00000021036.11_12	chr12	-	2028	12	FSM	ENSMUSG00000021036.11	ENSMUST00000021424.5	6710	12	101	4581	-13	0	multi-exon	FALSE	canonical	3	499	junction_2	40.0427457550466	664	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTATTCTACTTGTGAA	8797	False	NA	-11	True	ATTAAA	-14	NA	87435028	87356412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87415704_87415900_87434819
ENSMUSG00000021037.8_2	chr12	+	1364	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	13	0	1	0	multi-exon	TRUE	canonical	3	2699	junction_7	143.152890295656	1861	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCATTTCTTACAATCTAT	NA	False	NA	-2	True	AGTAAA	-16	NA	87313484	87320753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
ENSMUSG00000021038.18_1	chr12	-	2514	20	FSM	ENSMUSG00000021038.18	ENSMUST00000072744.15	2524	20	8	2	5	0	multi-exon	FALSE	canonical	3	87	junction_1	8.24352343784865	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTCTTCCCCATCTGGT	NA	False	NA	-12	True	AATAAA	-19	NA	87313022	87285648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
ENSMUSG00000021039.10_1	chr12	-	2223	14	FSM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	-3	12	-3	-12	multi-exon	FALSE	canonical	3	814	junction_13	97.7330623652505	1136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGTCTCAATTCTGT	NA	False	NA	-14	True	AATAAA	-8	NA	87519047	87496691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
ENSMUSG00000021039.10_4	chr12	-	2190	13	ISM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	3509	17	3504	-17	3prime_fragment	FALSE	canonical	3	831	junction_5	91.8780517255829	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTGTAGAAAAAGTCTCAAT	NA	False	NA	-19	True	AATAAA	-3	NA	87515535	87496696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379
ENSMUSG00000021040.16_0	chr12	+	395	4	FSM	ENSMUSG00000021040.16	ENSMUST00000161023.8	2701	4	17	2289	1	-3	multi-exon	FALSE	canonical	3	3495	junction_2	126.36015546401	493	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACACGTTTTTATTTGA	NA	False	NA	29	True	AATAAA	-16	NA	87490682	87496687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_87490797_87494333_87494393_87496062_87496171_87496573
ENSMUSG00000021044.16_13	chr12	+	2269	11	FSM	ENSMUSG00000021044.16	ENSMUST00000166940.3	2199	11	-70	0	4	0	multi-exon	FALSE	canonical	2	6	junction_1	20.9752234791432	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGACTGTTCCTTCTCA	NA	False	NA	9	True	AATAAA	-22	NA	88327588	88428488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_88327743_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
ENSMUSG00000021044.16_2	chr12	+	2159	11	FSM	ENSMUSG00000021044.16	ENSMUST00000101165.9	2158	11	-2	1	-2	0	multi-exon	TRUE	canonical	3	29	junction_1	14.3544418212622	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGACTGTTCCTTCTCA	NA	False	NA	9	True	AATAAA	-22	NA	88327321	88428488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_88327366_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
ENSMUSG00000021044.16_4	chr12	+	2320	11	FSM	ENSMUSG00000021044.16	ENSMUST00000222695.2	2253	11	-67	0	27	0	multi-exon	FALSE	canonical	3	17	junction_1	17.7822945651004	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACTGTTCCTTCTCAAT	NA	False	NA	11	True	AATAAA	-24	NA	88327350	88428490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_88327554_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
ENSMUSG00000021047.8_0	chr12	-	4152	5	FSM	ENSMUSG00000021047.8	ENSMUST00000021438.8	7154	5	-383	3385	-383	3173	multi-exon	FALSE	canonical	3	11	junction_1	3.56195171219375	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATCACTTGTCTCCCGTC	NA	False	NA	-6	True	TATAAA	-20	NA	46866095	46744684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_46747757_46760280_46760353_46767472_46767640_46863668_46863813_46865398
ENSMUSG00000021047.8_2	chr12	-	2455	1	ISM	ENSMUSG00000021047.8	ENSMUST00000021438.8	7154	5	118569	3389	20499	3169	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCATCACTTGTCTCC	NA	False	NA	-10	True	TATAAA	-16	NA	46747143	46744688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_46744700_46747100
ENSMUSG00000021047.8_4	chr12	-	4033	3	NNC	ENSMUSG00000021047.8	novel	7154	5	NA	NA	-403	-42640	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	5.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATCTGCTACAAGTGCAA	NA	False	NA	NA	False	NA	NA	NA	46866115	46810002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_46813175_46863668_46863813_46865398
ENSMUSG00000021048.8_2	chr12	+	3123	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	116	2	1	-1	multi-exon	TRUE	canonical	3	837	junction_20	135.484134190258	2487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTTGGTGTTGAAACATA	8027	False	NA	7	True	AATAAA	-15	NA	76302187	76366575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
ENSMUSG00000021051.11_0	chr12	-	2538	1	ISM	ENSMUSG00000021051.11	ENSMUST00000021447.9	4810	14	142764	18	96238	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGAATAACCCCTGAATG	NA	False	NA	NA	False	AATAAA	-15	NA	75500210	75497672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_75497700_75500200
ENSMUSG00000021051.11_1	chr12	-	3223	14	FSM	ENSMUSG00000021051.11	ENSMUST00000021447.9	4810	14	-25	1612	3	6	multi-exon	FALSE	canonical	3	142	junction_9	26.0225209699817	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGGTGCATCGTGACC	NA	False	NA	-10	True	AATAAA	-20	NA	75642999	75499266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_75500588_75506461_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75540187_75540290_75562375_75562573_75639942_75640107_75642408
ENSMUSG00000021051.11_5	chr12	-	3218	14	NNC	ENSMUSG00000021051.11	novel	4810	14	NA	NA	3	4	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_13	53.6105836058162	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCAAAGGTGCATCGTGA	NA	False	NA	-12	True	AATAAA	-18	NA	75642999	75499268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_75500588_75506461_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75540187_75540290_75562375_75562573_75639942_75640104_75642408
ENSMUSG00000021054.7_0	chr12	-	3258	3	FSM	ENSMUSG00000021054.7	ENSMUST00000021450.6	3323	3	43	22	10	-22	multi-exon	FALSE	canonical	3	57	junction_1	0.5	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAAAGATCTTTCTTCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	75782460	75761044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_75763439_75769425_75769516_75781686
ENSMUSG00000021054.7_1	chr12	-	1505	1	ISM	ENSMUSG00000021054.7	ENSMUST00000021450.6	3323	3	19954	22	19921	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAAAGATCTTTCTTCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	75762549	75761044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_75761000_75762500
ENSMUSG00000021054.7_4	chr12	-	1831	2	FSM	ENSMUSG00000021054.7	ENSMUST00000220285.2	3200	2	29	1340	29	-1340	multi-exon	FALSE	canonical	3	58	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGGACAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75782441	75768439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_75769516_75781686
ENSMUSG00000021056.9_1	chr12	-	1039	5	ISM	ENSMUSG00000021056.9	ENSMUST00000218426.2	1980	9	29765	1	12483	-1	3prime_fragment	TRUE	canonical	2	7	junction_2	10.0623058987491	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTATAGATGGTTTGAACT	1129	False	NA	NA	False	AATAAA	-19	NA	76263755	76250760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_76251085_76253561_76253769_76259148_76259332_76261186_76261493_76263736
ENSMUSG00000021056.9_5	chr12	-	821	4	NIC	ENSMUSG00000021056.9	novel	2137	10	NA	NA	12426	-10	combination_of_known_splicesites	FALSE	canonical	2	9	junction_1	11.0855260988773	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAAAAATCTCTTCTCT	1072	False	NA	NA	False	AATAAA	-14	NA	76263812	76245469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_76245726_76259148_76259332_76261186_76261493_76263736
ENSMUSG00000021057.16_3	chr12	+	6159	1	ISM	ENSMUSG00000021057.16	ENSMUST00000154078.3	6685	2	3094	8	3080	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTTAACTGTGTCTTT	3625	False	NA	NA	False	AATAAA	-15	NA	76374758	76380917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76374800_76380900
ENSMUSG00000021057.16_4	chr12	+	4190	2	FSM	ENSMUSG00000021057.16	ENSMUST00000154078.3	6685	2	-16	2511	-16	1586	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCATTCAATTTAGATAAA	515	False	NA	NA	False	NA	NA	NA	76371648	76378414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_76371764_76374339
ENSMUSG00000021061.16_0	chr12	-	4842	17	ISM	ENSMUSG00000021061.16	ENSMUST00000021458.13	10394	36	97521	15643	-28940	-1	internal_fragment	FALSE	canonical	3	10	junction_14	4.63301670081169	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTCTCTGGGGGAGGA	8902	False	NA	NA	False	AATAAA	-16	NA	76659800	76642904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_76644576_76645058_76645109_76645367_76645565_76646598_76646684_76647096_76647236_76648633_76648879_76650162_76650538_76650795_76651001_76652262_76652394_76653019_76653299_76654755_76654846_76655264_76655472_76655814_76656079_76657517_76657665_76658586_76658678_76658769_76658973_76659337
ENSMUSG00000021061.16_5	chr12	-	6907	32	ISM	ENSMUSG00000021061.16	ENSMUST00000021458.13	10394	36	412	16931	-112	-1289	5prime_fragment	FALSE	canonical	2	6	junction_26	5.26211994803944	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCACAGGGGAAACACTT	NA	False	NA	NA	False	AATAAA	-26	NA	76756909	76644192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_76644576_76645058_76645109_76645367_76645565_76646598_76646684_76647096_76647236_76648633_76648879_76650162_76650538_76650795_76651001_76652262_76652394_76653019_76653299_76654755_76654846_76655264_76655472_76655814_76656079_76657517_76657665_76658586_76658678_76658769_76658973_76659337_76660095_76665812_76665951_76667429_76668301_76668916_76669068_76669682_76669986_76671000_76671160_76671769_76671888_76673721_76673910_76674655_76674769_76675249_76675366_76675668_76675750_76676386_76676479_76677358_76677533_76679153_76679306_76696550_76696753_76756708
ENSMUSG00000021061.16_7	chr12	-	5329	19	ISM	ENSMUSG00000021061.16	ENSMUST00000021458.13	10394	36	89707	15773	-36754	-131	internal_fragment	FALSE	canonical	2	10	junction_14	4.84353967086158	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATCTCGACACCATTGTC	1088	False	NA	NA	False	NA	NA	NA	76667614	76643034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_76644576_76645058_76645109_76645367_76645565_76646598_76646684_76647096_76647236_76648633_76648879_76650162_76650538_76650795_76651001_76652262_76652394_76653019_76653299_76654755_76654846_76655264_76655472_76655814_76656079_76657517_76657665_76658586_76658678_76658769_76658973_76659337_76660095_76665812_76665951_76667429
ENSMUSG00000021061.16_9	chr12	-	6349	21	ISM	ENSMUSG00000021061.16	ENSMUST00000021458.13	10394	36	87579	15650	-38882	-8	internal_fragment	FALSE	canonical	2	10	junction_14	4.84664832642105	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGAGTGTTTCTCTGG	NA	False	NA	NA	False	AATAAA	-9	NA	76669742	76642911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_76644576_76645058_76645109_76645367_76645565_76646598_76646684_76647096_76647236_76648633_76648879_76650162_76650538_76650795_76651001_76652262_76652394_76653019_76653299_76654755_76654846_76655264_76655472_76655814_76656079_76657517_76657665_76658586_76658678_76658769_76658973_76659337_76660095_76665812_76665951_76667429_76668301_76668916_76669068_76669682
ENSMUSG00000021062.16_0	chr12	-	3120	7	FSM	ENSMUSG00000021062.16	ENSMUST00000021459.14	3158	7	30	8	30	-8	multi-exon	FALSE	canonical	3	60	junction_1	4.01732359773132	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATAGGTGTGTGGGTC	NA	False	NA	-10	True	AATAAA	-10	NA	76869297	76844741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_76847176_76847339_76847406_76848665_76848756_76849841_76849920_76850341_76850403_76851216_76851278_76868967
ENSMUSG00000021062.16_4	chr12	-	1413	1	ISM	ENSMUSG00000021062.16	ENSMUST00000021459.14	3158	7	23173	8	1454	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATAGGTGTGTGGGTC	NA	False	NA	-10	True	AATAAA	-10	NA	76846154	76844741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_76844700_76846200
ENSMUSG00000021065.17_0	chr12	+	2943	12	FSM	ENSMUSG00000021065.17	ENSMUST00000171770.10	2765	12	-80	-98	-57	-5	multi-exon	FALSE	canonical	3	35	junction_1	20.7412233753807	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGGAATTTTGTGAAGT	NA	False	NA	4	True	AATAAA	-5	NA	77284841	77522754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_77284974_77324134_77324230_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
ENSMUSG00000021065.17_2	chr12	+	2848	11	NIC	ENSMUSG00000021065.17	novel	2765	12	NA	NA	-55	-5	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	30.4065782356384	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGGAATTTTGTGAAGT	NA	False	NA	4	True	AATAAA	-5	NA	77284843	77522754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_77284974_77324134_77324230_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
ENSMUSG00000021065.17_4	chr12	+	3219	12	FSM	ENSMUSG00000021065.17	ENSMUST00000062804.8	3358	12	-221	360	31	-7	multi-exon	FALSE	canonical	3	62	junction_1	14.8022781360346	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAAGGAATTTTGTGAA	NA	False	NA	2	True	AATAAA	-3	NA	77285617	77522752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_77286028_77324134_77324230_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
ENSMUSG00000021065.17_7	chr12	+	3113	11	NIC	ENSMUSG00000021065.17	novel	3358	12	NA	NA	31	-20	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	26.8158535198863	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAATTTCAAAAA	NA	False	NA	-11	True	NA	NA	NA	77285617	77522739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_77286028_77324134_77324230_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
ENSMUSG00000021066.10_0	chr12	+	6942	13	ISM	ENSMUSG00000021066.10	ENSMUST00000021466.10	5150	15	-449	2397	42	-6	intron_retention	FALSE	canonical	1	5	junction_5	4.39933707127184	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTAAACCAAATGCTCA	8525	False	NA	1	True	ATTAAA	-15	NA	69939429	70010794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_69940119_69954578_69954767_69972715_69972964_69978311_69978447_69978990_69979096_69981643_69981695_69983848_69983906_69992986_69993080_69994220_69994360_70000213_70000342_70001229_70001287_70002089_70002162_70005814
ENSMUSG00000021066.10_3	chr12	+	2653	15	FSM	ENSMUSG00000021066.10	ENSMUST00000021466.10	5150	15	100	2397	100	-6	multi-exon	FALSE	canonical	1	5	junction_5	4.65766868197174	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTAAACCAAATGCTCA	9074	False	NA	1	True	ATTAAA	-15	NA	69939978	70010794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_69940119_69954578_69954767_69972715_69972964_69978311_69978447_69978990_69979096_69981643_69981695_69983848_69983906_69992986_69993080_69994220_69994360_70000213_70000342_70001229_70001287_70002089_70002162_70005814_70006247_70007321_70007337_70010001
ENSMUSG00000021066.10_4	chr12	+	2935	14	NIC	ENSMUSG00000021066.10	novel	5150	15	NA	NA	-227	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	5.63694491094193	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAAATGCTCACTGGCT	8747	False	NA	7	True	ATTAAA	-21	NA	69939651	70010800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_69940119_69954578_69954767_69972715_69972964_69978311_69978447_69978990_69979096_69983848_69983906_69992986_69993080_69994220_69994360_70000213_70000342_70001229_70001287_70002089_70002162_70005814_70006247_70007321_70007337_70010001
ENSMUSG00000021067.9_0	chr12	-	2595	5	FSM	ENSMUSG00000021067.9	ENSMUST00000021467.8	2524	5	-75	4	-75	-4	multi-exon	FALSE	canonical	3	134	junction_4	6.57171971404746	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTGTCTGGTCCTTGAA	NA	False	NA	-18	True	ATTAAA	-13	NA	70033851	70011789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_70013122_70015843_70015988_70022741_70023013_70030982_70031427_70033447
ENSMUSG00000021067.9_1	chr12	-	1717	3	FSM	ENSMUSG00000021067.9	ENSMUST00000220735.2	3360	3	1676	-33	1676	-3	multi-exon	FALSE	canonical	3	149	junction_1	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTCTGGTCCTTGAAT	NA	False	NA	-17	True	ATTAAA	-14	NA	70022981	70011788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_70013122_70015843_70015988_70022741
ENSMUSG00000021067.9_6	chr12	-	2314	4	NIC	ENSMUSG00000021067.9	novel	2524	5	NA	NA	-65	-4	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	65.576079649688	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTGTCTGGTCCTTGAA	NA	False	NA	-18	True	ATTAAA	-13	NA	70033841	70011789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_70013122_70015843_70015988_70030982_70031427_70033447
ENSMUSG00000021068.18_12	chr12	-	4654	29	NIC	ENSMUSG00000021068.18	novel	6708	30	NA	NA	-19	-4	combination_of_known_junctions	FALSE	canonical	3	12	junction_28	8.80949163443288	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGACTGTCTTCTTTG	NA	False	NA	NA	False	AATAAA	-12	NA	70158770	70065517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_70066037_70067607_70067806_70072153_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158209_70158257_70158627
ENSMUSG00000021068.18_13	chr12	-	4600	28	NIC	ENSMUSG00000021068.18	novel	4723	29	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_20	8.36807572611677	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGACTGTCTTCTTTGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	70158341	70065513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_70066037_70067607_70067806_70072153_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158209
ENSMUSG00000021068.18_17	chr12	-	4619	29	NIC	ENSMUSG00000021068.18	novel	6708	30	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_28	9.10791313269143	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGACTGTCTTCTTTGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	70158758	70065513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_70066037_70067607_70067806_70072180_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158209_70158257_70158627
ENSMUSG00000021068.18_19	chr12	-	2450	13	ISM	ENSMUSG00000021068.18	ENSMUST00000021468.14	6708	30	69398	6	-7276	-6	3prime_fragment	FALSE	canonical	3	23	junction_2	7.1336448530109	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTATGACTGTCTTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	70089301	70065519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_70066037_70067607_70067806_70072153_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70088905
ENSMUSG00000021068.18_21	chr12	-	4606	28	NIC	ENSMUSG00000021068.18	novel	6636	29	NA	NA	-20	-6	combination_of_known_junctions	FALSE	canonical	2	3	junction_27	9.24799314603341	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTATGACTGTCTTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	70158771	70065519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_70066037_70067607_70067806_70072153_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158627
ENSMUSG00000021068.18_25	chr12	-	4824	16	ISM	ENSMUSG00000021068.18	ENSMUST00000021468.14	6708	30	62872	0	2231	0	3prime_fragment	FALSE	canonical	3	8	junction_13	9.22219544842165	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGACTGTCTTCTTTGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	70095827	70065513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_70066037_70067607_70067806_70072153_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70088905_70091027_70091920_70092412_70093926_70094049_70095797
ENSMUSG00000021068.18_30	chr12	-	1905	1	ISM	ENSMUSG00000021068.18	ENSMUST00000085314.11	9675	29	89515	0	13488	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGGGTTTCTGCCTTGG	NA	False	NA	-2	True	AATAAA	-17	NA	70060113	70058208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_70058200_70060100
ENSMUSG00000021068.18_32	chr12	-	7717	30	NIC	ENSMUSG00000021068.18	novel	9919	30	NA	NA	5	-3	combination_of_known_junctions	TRUE	canonical	2	6	junction_1	10.3268809844994	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTCTGGGTTTCTGCCT	NA	False	NA	-5	True	AATAAA	-14	NA	70158746	70058211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_70061731_70064346_70064461_70067607_70067806_70072180_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158209_70158257_70158627
ENSMUSG00000021068.18_4	chr12	-	9864	31	NIC	ENSMUSG00000021068.18	novel	9919	30	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	10.3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGCCTCTGGGTTTCT	NA	False	NA	-9	True	AATAAA	-10	NA	70158749	70058215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_70061731_70064346_70064461_70067607_70067806_70072153_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70088905_70091027_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158209_70158257_70158627
ENSMUSG00000021068.18_52	chr12	-	4973	29	NIC	ENSMUSG00000021068.18	novel	7183	30	NA	NA	-3	-6	combination_of_known_junctions	FALSE	canonical	1	2	junction_27	9.95365536383699	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTATGACTGTCTTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	70158754	70065519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_70066037_70067607_70067806_70072180_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70157845_70158257_70158627
ENSMUSG00000021068.18_54	chr12	-	4604	28	NIC	ENSMUSG00000021068.18	novel	4723	29	NA	NA	17	6	combination_of_known_junctions	FALSE	canonical	3	13	junction_20	8.71370583679245	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATTTAAATGTATGACT	NA	False	NA	NA	False	AATAAA	-2	NA	70158386	70065527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_70066037_70067607_70067806_70072180_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158209
ENSMUSG00000021068.18_9	chr12	-	6749	29	FSM	ENSMUSG00000021068.18	ENSMUST00000169074.2	6636	29	-99	-14	8	-6	multi-exon	FALSE	canonical	2	3	junction_28	9.55188569907342	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTATGACTGTCTTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	70158793	70065519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_70066037_70067607_70067806_70072153_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70088905_70091027_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158627
ENSMUSG00000021069.18_1	chr12	-	2781	20	FSM	ENSMUSG00000021069.18	ENSMUST00000071250.13	2825	20	36	8	-35	0	multi-exon	FALSE	canonical	2	8	junction_17	3.93154724147013	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAATAGCCTGCTTGGAT	6236	False	NA	-8	True	AATAAA	-20	NA	70274421	70237592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_70237931_70240512_70240580_70241006_70241142_70242277_70242486_70243744_70243887_70243991_70244051_70244171_70244320_70244433_70244536_70245203_70245319_70246415_70246580_70246905_70247053_70248042_70248136_70248618_70248763_70253135_70253219_70254444_70254557_70257800_70257933_70263336_70263441_70266362_70266442_70269598_70269701_70274114
ENSMUSG00000021069.18_10	chr12	-	1629	10	ISM	ENSMUSG00000021069.18	ENSMUST00000071250.13	2825	20	27727	8	-2115	0	3prime_fragment	FALSE	canonical	3	13	junction_1	3.18948890986829	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAATAGCCTGCTTGGAT	NA	False	NA	-8	True	AATAAA	-20	NA	70246730	70237592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_70237931_70240512_70240580_70241006_70241142_70242277_70242486_70243744_70243887_70243991_70244051_70244171_70244320_70244433_70244536_70245203_70245319_70246415
ENSMUSG00000021069.18_3	chr12	-	498	3	ISM	ENSMUSG00000021069.18	ENSMUST00000071250.13	2825	20	33362	4	3520	-4	3prime_fragment	FALSE	canonical	3	13	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCCTGCTTGGATTCCT	NA	False	NA	-4	True	AATAAA	-24	NA	70241095	70237588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_70237931_70240512_70240580_70241006
ENSMUSG00000021070.7_0	chr12	+	3860	3	FSM	ENSMUSG00000021070.7	ENSMUST00000001652.7	3792	3	-68	0	-68	0	multi-exon	FALSE	canonical	3	6	junction_1	4.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGTTTCCCTGTGTCA	NA	False	NA	NA	False	AATAAA	-14	NA	105529416	105561496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105529508_105554455_105554560_105557831
ENSMUSG00000021070.7_4	chr12	+	2123	1	Genic_Genomic	ENSMUSG00000021070.7	novel	NA	NA	NA	NA	29890	1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTGTTTCCCTGTGTCAA	NA	False	NA	NA	False	AATAAA	-15	NA	105559374	105561497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_105559400_105561500
ENSMUSG00000021072.13_0	chr12	+	2335	8	FSM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	43	417	43	-417	multi-exon	FALSE	canonical	3	450	junction_7	45.1044140108849	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATGTTGAAGAGAAGTT	NA	False	NA	11	True	AATAAA	-17	NA	70499911	70514397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
ENSMUSG00000021072.13_27	chr12	+	1199	1	ISM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	13330	417	6584	-417	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATGTTGAAGAGAAGTT	NA	False	NA	11	True	AATAAA	-17	NA	70513198	70514397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_70513200_70514400
ENSMUSG00000021076.7_1	chr12	+	1317	13	FSM	ENSMUSG00000021076.7	ENSMUST00000021479.6	4022	13	49	2656	-9	1	multi-exon	FALSE	canonical	3	306	junction_4	23.8006769278149	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTTGCTTATTTCAAA	9694	False	NA	NA	False	AATAAA	-14	NA	70984679	71008836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640
ENSMUSG00000021076.7_13	chr12	+	969	7	ISM	ENSMUSG00000021076.7	ENSMUST00000021479.6	4022	13	15092	2438	-1375	219	3prime_fragment	FALSE	canonical	3	325	junction_3	18.9707377001763	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAATTTTATTAGTTTAT	2186	False	NA	4	True	AATAAA	-13	NA	70999722	71009054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640
ENSMUSG00000021076.7_2	chr12	+	1891	5	FSM	ENSMUSG00000021076.7	ENSMUST00000222291.2	615	5	-37	-1239	-9	1239	multi-exon	FALSE	canonical	3	306	junction_4	20.5836707124847	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATAAAATAAATAAACCTT	9694	False	NA	NA	False	NA	NA	NA	70984679	70995725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225
ENSMUSG00000021076.7_5	chr12	+	2080	14	NNC	ENSMUSG00000021076.7	novel	4022	13	NA	NA	-9	986	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	94.5177106850144	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAACCATTGCTCTTGT	9694	False	NA	NA	False	AATAAA	-14	NA	70984679	71009821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640_71009570_71009791
ENSMUSG00000021079.17_0	chr12	-	870	5	FSM	ENSMUSG00000021079.17	ENSMUST00000221559.2	718	5	-29	-123	10	0	multi-exon	FALSE	canonical	3	163	junction_4	64.161417534216	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183437	71169946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71183328
ENSMUSG00000021079.17_1	chr12	-	988	5	ISM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	3915	-1	3864	0	3prime_fragment	FALSE	canonical	1	2	junction_4	119.792528982404	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71179507	71169946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280
ENSMUSG00000021079.17_11	chr12	-	299	1	ISM	ENSMUSG00000021079.17	ENSMUST00000021486.10	794	4	13200	2	13124	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCAGTTGTCTTTACTGT	NA	False	NA	-20	True	AATAAA	-11	NA	71170247	71169948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_71169900_71170200
ENSMUSG00000021079.17_15	chr12	-	2988	3	ISM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	7931	6	7880	0	3prime_fragment	FALSE	canonical	3	274	junction_1	18.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTGAGCAGTTGTCTTT	NA	False	NA	-25	True	AATAAA	-6	NA	71175491	71169953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_71170461_71172235_71172332_71173106
ENSMUSG00000021079.17_4	chr12	-	789	4	FSM	ENSMUSG00000021079.17	ENSMUST00000021486.10	794	4	3	2	3	-1	multi-exon	FALSE	canonical	3	89	junction_3	97.112763779479	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCAGTTGTCTTTACTGT	NA	False	NA	-20	True	AATAAA	-11	NA	71183444	71169948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71183328
ENSMUSG00000021079.17_6	chr12	-	5157	4	ISM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	164	1	113	-1	intron_retention	FALSE	canonical	3	171	junction_3	59.2339992459286	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCAGTTGTCTTTACTGT	NA	False	NA	-20	True	AATAAA	-11	NA	71183258	71169948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774
ENSMUSG00000021079.17_7	chr12	-	2645	4	FSM	ENSMUSG00000021079.17	ENSMUST00000221815.2	1193	4	21	-1473	10	0	multi-exon	FALSE	canonical	3	163	junction_3	67.9607729993315	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183437	71169946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_71172332_71173106_71173172_71178774_71178861_71183328
ENSMUSG00000021087.19_0	chr12	-	1518	7	FSM	ENSMUSG00000021087.19	ENSMUST00000021497.16	1544	7	25	1	-13	-1	multi-exon	FALSE	canonical	3	47	junction_2	4.27200187265877	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACATTTCTCTCTGTCTT	NA	False	NA	NA	False	AATAAA	-13	NA	72283473	72258527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_72259352_72263544_72263604_72263688_72263736_72264192_72264263_72266030_72266170_72270105_72270314_72283302
ENSMUSG00000021087.19_2	chr12	-	3503	9	FSM	ENSMUSG00000021087.19	ENSMUST00000078505.14	3629	9	116	10	116	-9	multi-exon	FALSE	canonical	0	0	junction_6	26.5941722939444	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAATGTAGACATTTCTC	NA	False	NA	NA	False	AATAAA	-5	NA	72455712	72258535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_72259352_72263544_72263604_72263688_72263736_72264192_72264263_72266030_72266170_72270105_72270314_72350430_72351193_72354929_72355704_72455084
ENSMUSG00000021087.19_3	chr12	-	2206	6	ISM	ENSMUSG00000021087.19	ENSMUST00000150156.2	1428	7	10805	538	10805	-1	3prime_fragment	FALSE	canonical	3	47	junction_2	4.67332857821917	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	ACTAAA	-41	NA	72271708	72259063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_72259352_72263544_72263604_72263688_72263736_72264192_72264263_72266030_72266170_72270105
ENSMUSG00000021090.17_1	chr12	+	4437	25	NIC	ENSMUSG00000021090.17	novel	2520	16	NA	NA	122	826	intron_retention	FALSE	canonical	1	1	junction_18	3.60531051213192	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTATGTCTTTGTCATT	NA	False	NA	NA	False	AATAAA	-18	NA	72489144	72544839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_72489245_72496093_72496175_72496421_72496641_72497450_72497592_72497998_72498063_72498736_72498808_72500818_72501002_72502756_72502913_72506606_72506789_72507564_72507697_72510098_72510276_72510609_72510725_72513631_72513765_72515942_72516066_72516996_72517101_72520570_72520784_72522816_72522937_72523976_72524169_72525429_72525556_72528201_72528337_72529667_72529846_72532944_72533166_72533768_72533892_72542338_72542470_72543822
ENSMUSG00000021090.17_2	chr12	+	3633	25	NIC	ENSMUSG00000021090.17	novel	2520	16	NA	NA	101	-2	combination_of_known_junctions	TRUE	canonical	1	1	junction_18	3.4990077958695	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAAGGTGTCGAAATTA	NA	False	NA	NA	False	ATTAAA	-11	NA	72489123	72544011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_72489245_72496093_72496175_72496421_72496641_72497450_72497592_72497998_72498063_72498736_72498808_72500818_72501002_72502756_72502913_72506606_72506789_72507564_72507697_72510098_72510276_72510606_72510725_72513631_72513765_72515942_72516066_72516996_72517101_72520570_72520784_72522816_72522937_72523976_72524169_72525429_72525556_72528201_72528337_72529667_72529846_72532944_72533166_72533768_72533892_72542338_72542470_72543822
ENSMUSG00000021090.17_4	chr12	+	2310	2	NIC	ENSMUSG00000021090.17	novel	2413	13	NA	NA	11833	5319	intron_retention	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTGAGCTCAGTTCCTT	NA	False	NA	NA	False	AATAAA	-20	NA	72500855	72506859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_72502913_72506606
ENSMUSG00000021090.17_9	chr12	+	2492	16	FSM	ENSMUSG00000021090.17	ENSMUST00000161957.2	2520	16	7	21	7	-21	multi-exon	FALSE	canonical	2	5	junction_7	2.95897880282295	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAATTAAATTTTCTTAAG	NA	False	NA	NA	False	AATAAA	-5	NA	72489029	72520963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_72489245_72496093_72496175_72496421_72496641_72497450_72497592_72497998_72498063_72498736_72498808_72500818_72501002_72502756_72502913_72506606_72506789_72507564_72507697_72510098_72510276_72510606_72510725_72513631_72513765_72515942_72516066_72516996_72517101_72520570
ENSMUSG00000021094.11_0	chr12	-	1199	7	FSM	ENSMUSG00000021094.11	ENSMUST00000021512.11	1385	7	128	58	-1	-1	multi-exon	FALSE	canonical	3	103	junction_1	5.61990510002912	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTGCCTTTGTACAAGAG	NA	False	NA	-15	True	AATAAA	-17	NA	72711555	72697184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72704101_72704209_72706117_72706271_72711402
ENSMUSG00000021094.11_1	chr12	-	974	6	ISM	ENSMUSG00000021094.11	ENSMUST00000021512.11	1385	7	5542	1	5387	-1	3prime_fragment	FALSE	canonical	3	103	junction_1	6.03324125159934	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAGACTGCAGACTTAG	NA	False	NA	42	True	AATAAA	-15	NA	72706141	72697127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72704101_72704209_72706117
ENSMUSG00000021095.6_0	chr12	-	1187	3	FSM	ENSMUSG00000021095.6	ENSMUST00000021513.6	1268	3	69	12	69	-12	multi-exon	FALSE	canonical	3	74	junction_1	3	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCAGCCATGTTGTATTT	NA	False	NA	-23	True	AATAAA	-14	NA	104439520	104437479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_104437906_104438251_104438512_104439019
ENSMUSG00000021096.12_21	chr12	+	3442	2	ISM	ENSMUSG00000021096.12	ENSMUST00000222896.2	1103	3	190	4393	190	69	5prime_fragment	FALSE	canonical	3	418	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAATCTGAGATCCTT	NA	False	NA	6	True	AATAAA	-11	NA	72830666	72836243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_72831311_72833445
ENSMUSG00000021096.12_22	chr12	+	1668	5	ISM	ENSMUSG00000021096.12	ENSMUST00000021514.10	7668	6	22790	5261	298	-6	3prime_fragment	FALSE	canonical	3	299	junction_2	42.9498253779919	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACATGTAATCATGTATG	NA	False	NA	NA	False	AATAAA	-17	NA	72830774	72841332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_72831311_72833445_72833564_72837406_72837516_72839551_72839610_72840485
ENSMUSG00000021096.12_7	chr12	+	2339	6	FSM	ENSMUSG00000021096.12	ENSMUST00000021514.10	7668	6	64	5265	-40	-10	multi-exon	FALSE	canonical	3	299	junction_3	38.6336640768126	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAGACATGTAATCATG	NA	False	NA	NA	False	AATAAA	-13	NA	72808048	72841328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_72808406_72830456_72831311_72833445_72833564_72837406_72837516_72839551_72839610_72840485
ENSMUSG00000021096.12_8	chr12	+	4001	3	FSM	ENSMUSG00000021096.12	ENSMUST00000223410.2	3900	3	-32	-69	-32	69	multi-exon	FALSE	canonical	3	365	junction_1	26.5	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAATCTGAGATCCTT	NA	False	NA	6	True	AATAAA	-11	NA	72808056	72836243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_72808406_72830456_72831311_72833445
ENSMUSG00000021097.16_0	chr12	-	1873	1	ISM	ENSMUSG00000021097.16	ENSMUST00000109936.3	11866	13	100082	5	15877	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATCACCTCTTTGCTAA	NA	False	NA	NA	False	AATAAA	-11	NA	104731253	104729380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_104729400_104731300
ENSMUSG00000021097.16_1	chr12	-	3275	13	FSM	ENSMUSG00000021097.16	ENSMUST00000109936.3	11866	13	-43	8634	-43	6	multi-exon	FALSE	canonical	3	35	junction_6	8.27143679578504	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAGTCTTTCTACCGCAT	NA	False	NA	-18	True	AATAAA	-21	NA	104831378	104738009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_104738223_104740031_104740103_104740747_104740809_104743203_104743401_104746980_104748661_104750165_104750249_104751651_104751846_104756240_104756432_104758097_104758191_104763300_104763385_104766735_104766832_104770867_104770930_104831128
ENSMUSG00000021097.16_17	chr12	-	3966	5	ISM	ENSMUSG00000021097.16	ENSMUST00000109936.3	11866	13	83947	5618	-258	2745	3prime_fragment	FALSE	canonical	3	48	junction_1	6.13901457890434	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGTTTTGTTTTGTTT	4682	False	NA	NA	False	AATAAA	-8	NA	104747388	104734993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_104738223_104740031_104740103_104740747_104740809_104743203_104743401_104746980
ENSMUSG00000021097.16_25	chr12	-	3201	11	ISM	ENSMUSG00000021097.16	ENSMUST00000109937.9	3529	14	-110	2799	-43	-3	5prime_fragment	FALSE	canonical	3	35	junction_4	8.43563868358526	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCCAAGGCCTCTTTG	NA	False	NA	NA	False	AATAAA	-12	NA	104831378	104740537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_104740809_104743203_104743401_104746980_104748661_104750165_104750249_104751651_104751846_104756240_104756432_104758097_104758191_104763300_104763385_104766735_104766832_104770867_104770930_104831128
ENSMUSG00000021097.16_5	chr12	-	3380	14	FSM	ENSMUSG00000021097.16	ENSMUST00000109937.9	3529	14	-112	261	-45	16	multi-exon	FALSE	non_canonical	0	0	junction_1	16.3518994427135	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACCGCATCTTACTGTCT	NA	False	NA	-8	True	AATAAA	-31	NA	104831380	104737999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_104738223_104739440_104739534_104740031_104740103_104740747_104740809_104743203_104743401_104746980_104748661_104750165_104750249_104751651_104751846_104756240_104756432_104758097_104758191_104763300_104763385_104766735_104766832_104770867_104770930_104831128
ENSMUSG00000021098.15_1	chr12	-	1920	8	NIC	ENSMUSG00000021098.15	novel	2051	18	NA	NA	-560	130	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	9.58740670603572	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTTCTTTCATAAATTC	NA	False	NA	NA	False	ATTAAA	-25	NA	72953807	72927752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_72928199_72931996_72932055_72936481_72936621_72939577_72939754_72945260_72945308_72945483_72945570_72949989_72950109_72952958
ENSMUSG00000021098.15_11	chr12	-	1348	2	ISM	ENSMUSG00000021098.15	ENSMUST00000132901.8	790	7	10409	-157	10207	103	3prime_fragment	FALSE	canonical	3	15	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTGTTTGCTTGTTT	2616	False	NA	NA	False	AATATA	-43	NA	72942838	72939486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_72939754_72941757
ENSMUSG00000021098.15_12	chr12	-	1871	4	NIC	ENSMUSG00000021098.15	novel	1939	8	NA	NA	-26	-6	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	11.7756811551038	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAATGTGTATGGGTATT	NA	False	NA	NA	False	AATAAA	-15	NA	72964706	72958438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_72960049_72963447_72963505_72963596_72963654_72964559
ENSMUSG00000021098.15_14	chr12	-	1919	4	NIC	ENSMUSG00000021098.15	novel	2051	18	NA	NA	8	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	9.42809041582063	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTATGGGTATTTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	72964672	72958434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_72960049_72963447_72963505_72963596_72963654_72964481
ENSMUSG00000021098.15_15	chr12	-	2003	5	ISM	ENSMUSG00000021098.15	ENSMUST00000044000.12	2051	18	51	30552	2	-2	5prime_fragment	FALSE	canonical	3	18	junction_2	8.16624148553054	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTATGGGTATTTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	72964629	72958434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964481
ENSMUSG00000021098.15_16	chr12	-	2328	4	ISM	ENSMUSG00000021098.15	ENSMUST00000131033.8	1939	8	505	5427	408	-2	internal_fragment	FALSE	canonical	3	18	junction_2	8.28653526310404	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTATGGGTATTTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	72964126	72958434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596
ENSMUSG00000021102.5_0	chr12	+	884	2	FSM	ENSMUSG00000021102.5	ENSMUST00000021522.5	2925	2	-12	2053	-10	114	multi-exon	FALSE	canonical	3	651	junction_1	0	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGTGTGTGTGAGTCATT	6348	False	NA	11	True	ATTAAA	-11	NA	104998936	105007112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_104999242_105006533
ENSMUSG00000021102.5_8	chr12	+	279	1	ISM	ENSMUSG00000021102.5	ENSMUST00000021522.5	2925	2	7880	2058	5354	109	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAGACGTGTGTGTGAG	3376	False	NA	6	True	ATTAAA	-6	NA	105006828	105007107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_105006800_105007100
ENSMUSG00000021103.13_2	chr12	+	1326	9	NNC	ENSMUSG00000021103.13	novel	2505	8	NA	NA	-11482	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	125.672938614485	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTGTGGGATTTTTT	NA	False	NA	6	True	AATAAA	-16	NA	73159008	73319625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_73159029_73170552_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ENSMUSG00000021103.13_3	chr12	+	1355	8	FSM	ENSMUSG00000021103.13	ENSMUST00000021523.7	2505	8	13	1137	13	0	multi-exon	FALSE	non_canonical	0	0	junction_6	110.46488037344	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTGTGGGATTTTTT	NA	False	NA	6	True	AATAAA	-16	NA	73170503	73319625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ENSMUSG00000021108.19_0	chr12	+	3667	14	FSM	ENSMUSG00000021108.19	ENSMUST00000021527.15	3545	14	-134	12	-133	-3	multi-exon	FALSE	canonical	1	3	junction_1	3.36532966988113	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAAAGGAAATTTTGTGA	NA	False	NA	NA	False	AATAAA	-12	NA	73631436	73824947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_73632300_73696065_73696130_73738321_73738473_73739705_73739741_73742960_73743050_73744690_73744821_73746954_73747083_73749211_73749356_73749512_73749687_73768509_73768665_73805659_73805799_73806326_73806516_73822163_73822308_73823685
ENSMUSG00000021109.14_0	chr12	+	3943	15	NIC	ENSMUSG00000021109.14	novel	4724	15	NA	NA	99	-640	combination_of_known_junctions	FALSE	canonical	3	216	junction_10	79.3247008394315	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCTGGGTCAGCGCTTA	8457	False	NA	18	True	AATAAA	-18	NA	73954776	73993664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988503_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
ENSMUSG00000021109.14_1	chr12	+	3986	15	FSM	ENSMUSG00000021109.14	ENSMUST00000021530.8	4724	15	99	639	99	-639	multi-exon	FALSE	canonical	3	312	junction_10	63.740545517411	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGGTCAGCGCTTAC	8457	False	NA	19	True	AATAAA	-19	NA	73954776	73993665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988461_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
ENSMUSG00000021109.14_2	chr12	+	3944	15	NNC	ENSMUSG00000021109.14	novel	4724	15	NA	NA	99	-642	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_1	110.208707385912	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCCCCTGGGTCAGCGCT	8457	False	NA	16	True	AATAAA	-16	NA	73954776	73993662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_73955099_73973327_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988503_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
ENSMUSG00000021109.14_4	chr12	+	3987	15	NNC	ENSMUSG00000021109.14	novel	4724	15	NA	NA	101	-639	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_1	100.579545127025	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGGTCAGCGCTTAC	8459	False	NA	19	True	AATAAA	-19	NA	73954778	73993665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_73955099_73973327_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988461_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
ENSMUSG00000021111.16_1	chr12	+	1061	9	FSM	ENSMUSG00000021111.16	ENSMUST00000166735.8	1033	9	-31	3	-7	-3	multi-exon	FALSE	canonical	3	1577	junction_3	94.8235202890085	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTTAGTCTTATTTCTG	NA	False	NA	14	True	AATAAA	-17	NA	105750984	105775965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
ENSMUSG00000021111.16_158	chr12	+	1826	1	NIC	ENSMUSG00000021111.16	novel	3022	23	NA	NA	8027	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAATAAAAAAAAAAACAGC	NA	False	NA	-13	True	NA	NA	NA	105803352	105805178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_105803400_105805200
ENSMUSG00000021111.16_2	chr12	+	4399	21	FSM	ENSMUSG00000021111.16	ENSMUST00000170002.8	2605	21	-146	-1648	-7	-18	multi-exon	FALSE	canonical	3	84	junction_19	453.97952597006	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAAAAAACAGCAC	NA	False	NA	-11	True	AAAACA	-2	NA	105750984	105805180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105800968_105801044_105803023
ENSMUSG00000021111.16_4	chr12	+	4462	22	FSM	ENSMUSG00000021111.16	ENSMUST00000109901.9	4380	22	32	-114	-7	-18	multi-exon	FALSE	canonical	3	846	junction_12	378.82265398812	1576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAAAAAACAGCAC	NA	False	NA	-11	True	AAAACA	-2	NA	105750984	105805180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
ENSMUSG00000021111.16_7	chr12	+	4461	22	NIC	ENSMUSG00000021111.16	novel	4380	22	NA	NA	5	-21	intron_retention	FALSE	canonical	3	81	junction_17	450.308495918741	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CACAATAAAAAAAAAAACAG	NA	False	NA	-14	True	NA	NA	NA	105750979	105805177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794542_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
ENSMUSG00000021111.16_8	chr12	+	3396	22	NIC	ENSMUSG00000021111.16	novel	4380	22	NA	NA	-5	-603	combination_of_known_junctions	FALSE	canonical	3	65	junction_21	449.844346977859	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTTTTAATTCCCTAA	NA	False	NA	18	True	AATAAA	-12	NA	105750986	105802514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105801421
ENSMUSG00000021112.10_0	chr12	+	5263	15	NIC	ENSMUSG00000021112.10	novel	5283	15	NA	NA	-4	-7	combination_of_known_junctions	FALSE	canonical	3	104	junction_7	16.9175672492428	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGTAAAAGCCACTGGA	NA	False	NA	9	True	AATAAA	-18	NA	78795676	78887353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_78795720_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
ENSMUSG00000021112.10_1	chr12	+	5031	15	NIC	ENSMUSG00000021112.10	novel	5283	15	NA	NA	-9	-7	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	32.7592485772635	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGTAAAAGCCACTGGA	NA	False	NA	9	True	AATAAA	-18	NA	78795671	78887353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_78795720_78841018_78841108_78843876_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
ENSMUSG00000021112.10_11	chr12	+	5135	15	NIC	ENSMUSG00000021112.10	novel	5470	15	NA	NA	-31	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	41.9492526264577	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGCCACTGGACACTTT	NA	False	NA	15	True	AATAAA	-24	NA	78795734	78887359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_78795881_78841018_78841108_78843876_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
ENSMUSG00000021112.10_13	chr12	+	5220	14	ISM	ENSMUSG00000021112.10	ENSMUST00000082024.7	5470	15	45252	136	-35231	-8	3prime_fragment	FALSE	canonical	3	104	junction_6	15.919917932648	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATTGTAAAAGCCACTGG	NA	False	NA	8	True	AATAAA	-17	NA	78841017	78887352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
ENSMUSG00000021112.10_23	chr12	+	2464	1	ISM	ENSMUSG00000021112.10	ENSMUST00000219197.2	5283	15	89209	7	3653	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGTAAAAGCCACTGGA	NA	False	NA	9	True	AATAAA	-18	NA	78884889	78887353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_78884900_78887400
ENSMUSG00000021112.10_3	chr12	+	5368	15	FSM	ENSMUSG00000021112.10	ENSMUST00000082024.7	5470	15	-38	140	28	-12	multi-exon	FALSE	canonical	3	22	junction_1	32.6002378856977	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTCAAATTGTAAAAGCCA	NA	False	NA	4	True	AATAAA	-13	NA	78795727	78887348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_78795881_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
ENSMUSG00000021113.6_1	chr12	+	1602	9	NIC	ENSMUSG00000021113.6	novel	6275	10	NA	NA	-9	282	combination_of_known_splicesites	FALSE	canonical	3	4	junction_3	28.297250308113	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTTCTAGTGTGTGAAAT	NA	False	NA	7	True	AATAAA	-19	NA	74011290	74031163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_74011521_74014681_74014842_74015012_74015154_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
ENSMUSG00000021113.6_19	chr12	+	3242	1	ISM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	21199	0	13829	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTTATTTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	74032498	74035740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_74032500_74035700
ENSMUSG00000021113.6_2	chr12	+	1697	10	FSM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	-1	4579	-1	280	multi-exon	FALSE	canonical	3	65	junction_3	11.7473401244707	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTCTAGTGTGTGAA	NA	False	NA	5	True	AATAAA	-17	NA	74011298	74031161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
ENSMUSG00000021113.6_4	chr12	+	2833	10	NIC	ENSMUSG00000021113.6	novel	6275	10	NA	NA	7	278	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	28.0981524808929	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATCTTCTAGTGTGTG	NA	False	NA	3	True	AATAAA	-15	NA	74011306	74031159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74029490
ENSMUSG00000021113.6_7	chr12	+	2817	9	NNC	ENSMUSG00000021113.6	novel	6275	10	NA	NA	9	282	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_8	27.4018133524043	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTTCTAGTGTGTGAAAT	NA	False	NA	7	True	AATAAA	-19	NA	74011308	74031163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029406
ENSMUSG00000021114.10_0	chr12	-	1308	9	FSM	ENSMUSG00000021114.10	ENSMUST00000021536.9	3667	9	95	2264	-48	13	multi-exon	FALSE	canonical	3	904	junction_8	86.5761947650739	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGTTGTTTCTTTT	64	False	NA	-8	True	AGTAAA	-9	NA	78908317	78889762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
ENSMUSG00000021114.10_2	chr12	-	2545	8	NIC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	-45	13	intron_retention	FALSE	canonical	3	904	junction_7	87.6938086847222	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGTTGTTTCTTTT	67	False	NA	-8	True	AGTAAA	-9	NA	78908314	78889762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
ENSMUSG00000021115.16_0	chr12	+	1483	14	FSM	ENSMUSG00000021115.16	ENSMUST00000085026.12	3711	14	1	2227	1	-1	multi-exon	FALSE	canonical	3	514	junction_12	169.729126349489	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGAAGGGTAATTTATAAA	NA	False	NA	NA	False	ATTAAA	-21	NA	105976551	106041458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
ENSMUSG00000021115.16_4	chr12	+	1423	13	FSM	ENSMUSG00000021115.16	ENSMUST00000072040.7	1509	13	65	21	1	-1	multi-exon	FALSE	canonical	3	439	junction_12	159.966901958568	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGAAGGGTAATTTATAAA	NA	False	NA	NA	False	ATTAAA	-21	NA	105976551	106041458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
ENSMUSG00000021115.16_9	chr12	+	1551	15	FSM	ENSMUSG00000021115.16	ENSMUST00000021539.16	1742	15	-19	210	5	-1	multi-exon	FALSE	canonical	3	113	junction_12	308.222032678671	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGAAGGGTAATTTATAAA	NA	False	NA	NA	False	ATTAAA	-21	NA	105976555	106041458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
ENSMUSG00000021116.11_0	chr12	+	1468	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	245	1692	-21	-1692	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	3300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGTAGGCTTCTTCCTT	NA	False	NA	21	True	AATAAA	-14	NA	78908837	78932092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
ENSMUSG00000021118.8_0	chr12	-	1580	9	FSM	ENSMUSG00000021118.8	ENSMUST00000021544.8	1583	9	-3	6	-3	-6	multi-exon	FALSE	canonical	3	37	junction_6	8.60868021243675	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTGTTATGGTTCTTG	NA	False	NA	-6	True	AATAAA	-15	NA	78953741	78935470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_78936082_78936685_78936765_78938902_78938987_78940850_78940953_78941161_78941350_78941646_78941739_78942905_78943088_78946828_78946994_78953664
ENSMUSG00000021118.8_5	chr12	-	1388	8	NIC	ENSMUSG00000021118.8	novel	1583	9	NA	NA	1	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	19.3084522044262	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTGTTATGGTTCTTG	NA	False	NA	-6	True	AATAAA	-15	NA	78953737	78935470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_78936082_78936685_78936765_78938902_78938987_78940850_78940953_78941646_78941739_78942905_78943088_78946828_78946994_78953664
ENSMUSG00000021120.12_0	chr12	-	2320	4	FSM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	10	9	4	-9	multi-exon	FALSE	canonical	3	102	junction_1	16.0485374896143	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCAAAGTATGGACTTG	NA	False	NA	-10	True	AATAAA	-45	NA	79136415	79127446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_79129271_79130389_79130474_79132420_79132631_79136213
ENSMUSG00000021120.12_2	chr12	-	2317	4	NNC	ENSMUSG00000021120.12	novel	2339	4	NA	NA	4	-9	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	51.7451017542294	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCAAAGTATGGACTTG	NA	False	NA	-10	True	AATAAA	-45	NA	79136415	79127446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_79129271_79130389_79130471_79132420_79132631_79136213
ENSMUSG00000021120.12_4	chr12	-	1199	1	ISM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	7780	9	7774	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCAAAGTATGGACTTG	5891	False	NA	-10	True	AATAAA	-45	NA	79128645	79127446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79127400_79128600
ENSMUSG00000021120.12_5	chr12	-	2307	4	NIC	ENSMUSG00000021120.12	novel	2339	4	NA	NA	12	-9	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	42.4342628858646	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCAAAGTATGGACTTG	NA	False	NA	-10	True	AATAAA	-45	NA	79136407	79127446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_79129271_79130389_79130474_79132420_79132626_79136213
ENSMUSG00000021123.13_0	chr12	+	1684	7	FSM	ENSMUSG00000021123.13	ENSMUST00000021548.12	1678	7	-8	2	-8	-1	multi-exon	FALSE	canonical	2	3	junction_5	2.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTGGTGTCTTTTCTC	367	False	NA	NA	False	AATAAA	-17	NA	79255679	79269437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_79255883_79257614_79257734_79258161_79258318_79259426_79259532_79260317_79260528_79265449_79265640_79268736
ENSMUSG00000021124.14_1	chr12	-	1023	6	FSM	ENSMUSG00000021124.14	ENSMUST00000055262.13	1490	6	223	244	4	68	multi-exon	FALSE	canonical	3	652	junction_4	37.0534748707864	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTTACATGTATAACATT	NA	False	NA	-7	True	AATAAA	-20	NA	79219218	79203034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218993
ENSMUSG00000021125.7_0	chr12	+	1387	8	FSM	ENSMUSG00000021125.7	ENSMUST00000021550.7	1428	8	33	8	33	-8	multi-exon	FALSE	canonical	0	0	junction_1	0.728431359084683	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCATACTGGTCTTGTTG	9121	False	NA	NA	False	CATAAA	-20	NA	79177583	79203067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_79177755_79178614_79178688_79194361_79194540_79196642_79196803_79197505_79197601_79197726_79197832_79198695_79198833_79202599
ENSMUSG00000021127.8_0	chr12	-	2981	2	FSM	ENSMUSG00000021127.8	ENSMUST00000021552.3	2990	2	3	6	3	-6	multi-exon	FALSE	canonical	3	257	junction_1	0	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATGATTTGTCTATAG	9170	False	NA	86	True	AATAAA	-12	NA	80159784	80154533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_80157323_80159592
ENSMUSG00000021127.8_2	chr12	-	1965	1	ISM	ENSMUSG00000021127.8	ENSMUST00000021552.3	2990	2	3289	6	3270	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATGATTTGTCTATAG	NA	False	NA	86	True	AATAAA	-12	NA	80156498	80154533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_80154500_80156500
ENSMUSG00000021130.9_0	chr12	+	3957	16	FSM	ENSMUSG00000021130.9	ENSMUST00000219993.2	4222	16	264	1	-261	-1	multi-exon	FALSE	canonical	2	6	junction_1	5.44630353746669	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATAGGCTGATGCCTTT	NA	False	NA	2	True	AATAAA	-17	NA	80565314	80650665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80565423_80565829_80566120_80619072_80619231_80622632_80622732_80623275_80623344_80624161_80624228_80626738_80626861_80627995_80628084_80630423_80630509_80630786_80630891_80635232_80635360_80637368_80637462_80639174_80639259_80643854_80643997_80644791_80644918_80648468
ENSMUSG00000021130.9_10	chr12	+	1756	1	ISM	ENSMUSG00000021130.9	ENSMUST00000021558.8	3922	15	83148	5	4035	1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAGGCTGATGCCTTTAT	4398	False	NA	4	True	AATAAA	-19	NA	80648911	80650667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_80648900_80650700
ENSMUSG00000021130.9_3	chr12	+	3853	15	FSM	ENSMUSG00000021130.9	ENSMUST00000021558.8	3922	15	63	6	63	0	multi-exon	FALSE	canonical	2	15	junction_3	4.40141442942968	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATAGGCTGATGCCTTTA	NA	False	NA	3	True	AATAAA	-18	NA	80565826	80650666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80566120_80619072_80619231_80622632_80622732_80623275_80623344_80624161_80624228_80626738_80626861_80627995_80628084_80630423_80630509_80630786_80630891_80635232_80635360_80637368_80637462_80639174_80639259_80643854_80643997_80644791_80644918_80648468
ENSMUSG00000021130.9_9	chr12	+	3144	10	ISM	ENSMUSG00000021130.9	ENSMUST00000021558.8	3922	15	61001	5	-4125	1	3prime_fragment	FALSE	canonical	2	15	junction_3	4.76095228569523	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAGGCTGATGCCTTTAT	NA	False	NA	4	True	AATAAA	-19	NA	80626764	80650667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_80626861_80627995_80628084_80630423_80630509_80630786_80630891_80635232_80635360_80637368_80637462_80639174_80639259_80643854_80643997_80644791_80644918_80648468
ENSMUSG00000021131.15_2	chr12	-	773	4	FSM	ENSMUSG00000021131.15	ENSMUST00000021559.14	1293	4	507	13	-2	-13	multi-exon	FALSE	canonical	3	8000	junction_3	570.898122843881	2303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTCACTGAGTGGTT	NA	False	NA	-14	True	AATAAA	-18	NA	80690608	80680808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80690537
ENSMUSG00000021131.15_3	chr12	-	828	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	0	-322	0	-13	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTCACTGAGTGGTT	NA	False	NA	-14	True	AATAAA	-18	NA	80690606	80680808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
ENSMUSG00000021133.10_0	chr12	+	4967	6	FSM	ENSMUSG00000021133.10	ENSMUST00000068519.7	4977	6	7	3	7	-3	multi-exon	FALSE	canonical	3	47	junction_3	3.86781592116274	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGAGATGTAGTCCTT	3466	False	NA	14	True	AATAAA	-16	NA	80837339	80927606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80837590_80874799_80875018_80915200_80915399_80916848_80916985_80920922_80921351_80923869
ENSMUSG00000021133.10_1	chr12	+	5028	7	FSM	ENSMUSG00000021133.10	ENSMUST00000220238.2	2127	7	56	-2957	7	-5	multi-exon	FALSE	canonical	1	6	junction_2	21.4689698557399	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGATGTGAGATGTAGTCC	3466	False	NA	12	True	AATAAA	-14	NA	80837339	80927604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80837590_80874799_80875018_80897987_80898051_80915200_80915399_80916848_80916985_80920922_80921351_80923869
ENSMUSG00000021133.10_6	chr12	+	3883	2	ISM	ENSMUSG00000021133.10	ENSMUST00000068519.7	4977	6	83867	8	5718	-8	3prime_fragment	FALSE	canonical	3	58	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCAGATGTGAGATGTAG	NA	False	NA	9	True	AATAAA	-11	NA	80921199	80927601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_80921351_80923869
ENSMUSG00000021133.10_7	chr12	+	2541	1	ISM	ENSMUSG00000021133.10	ENSMUST00000068519.7	4977	6	87732	4	9583	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATGTGAGATGTAGTCCT	NA	False	NA	13	True	AATAAA	-15	NA	80925064	80927605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_80925100_80927600
ENSMUSG00000021134.18_0	chr12	+	2713	7	NIC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	3	0	intron_retention	FALSE	canonical	3	1278	junction_1	250.508150233347	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	AATAAA	-13	NA	80992310	80997271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
ENSMUSG00000021134.18_1	chr12	+	1491	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	3	4	1	2	multi-exon	FALSE	canonical	3	289	junction_7	580.121838012305	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGCTTTTGGTCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	80992308	80997273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUSG00000021134.18_14	chr12	+	1613	8	NIC	ENSMUSG00000021134.18	novel	1568	8	NA	NA	3	0	intron_retention	FALSE	canonical	3	289	junction_7	680.802857376675	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	AATAAA	-13	NA	80992310	80997271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUSG00000021134.18_16	chr12	+	2842	7	NIC	ENSMUSG00000021134.18	novel	1568	8	NA	NA	1	1	intron_retention	FALSE	canonical	3	562	junction_1	513.606096363957	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAACTGCTTTTGGTCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	80992308	80997272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
ENSMUSG00000021134.18_4	chr12	+	1486	8	FSM	ENSMUSG00000021134.18	ENSMUST00000094693.11	1527	8	33	8	3	2	multi-exon	FALSE	canonical	3	1278	junction_1	232.390680904869	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGCTTTTGGTCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	80992310	80997273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUSG00000021134.18_7	chr12	+	1612	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	-48	4	3	2	multi-exon	FALSE	canonical	3	562	junction_1	476.276244656911	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGCTTTTGGTCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	80992310	80997273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUSG00000021134.18_8	chr12	+	1482	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110352.10	1491	8	5	4	3	2	multi-exon	FALSE	canonical	3	307	junction_1	564.545762863691	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGCTTTTGGTCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	80992310	80997273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUSG00000021136.14_18	chr12	+	3457	13	FSM	ENSMUSG00000021136.14	ENSMUST00000021564.11	3439	13	-17	-1	3	1	multi-exon	FALSE	canonical	3	56	junction_1	31.9699294476683	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTGGTGCCTCTTTCTT	NA	False	NA	14	True	AATAAA	-16	NA	81073584	81233185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ENSMUSG00000021136.14_20	chr12	+	3493	13	FSM	ENSMUSG00000021136.14	ENSMUST00000110347.9	3496	13	0	3	0	1	multi-exon	FALSE	canonical	3	17	junction_5	48.9003379901975	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTGGTGCCTCTTTCTT	NA	False	NA	14	True	AATAAA	-16	NA	81073581	81233185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ENSMUSG00000021136.14_32	chr12	+	2022	2	ISM	ENSMUSG00000021136.14	ENSMUST00000021564.11	3439	13	157053	1	157053	-1	3prime_fragment	FALSE	canonical	3	175	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCAGCTGGTGCCTCTTTC	NA	False	NA	12	True	AATAAA	-14	NA	81230654	81233183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_81230816_81231322
ENSMUSG00000021136.14_34	chr12	+	1543	1	ISM	ENSMUSG00000021136.14	ENSMUST00000110347.9	3496	13	158061	3	158041	1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTGGTGCCTCTTTCTT	NA	False	NA	14	True	AATAAA	-16	NA	81231642	81233185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_81231600_81233200
ENSMUSG00000021136.14_4	chr12	+	3176	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7382	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	46.2909728420852	117	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTGGTGCCTCTTTCTT	NA	False	NA	14	True	AATAAA	-16	NA	81066199	81233185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_81066267_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ENSMUSG00000021136.14_5	chr12	+	3205	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7378	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	58.4429327540028	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTGGTGCCTCTTTCTT	NA	False	NA	14	True	AATAAA	-16	NA	81066203	81233185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_81066267_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ENSMUSG00000021139.18_0	chr12	-	693	5	NIC	ENSMUSG00000021139.18	novel	1043	6	NA	NA	20	-165	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	124.884696820707	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTTCTCAGTGTTCCA	NA	False	NA	-45	True	AATAAA	-20	NA	81579631	81405798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81579489
ENSMUSG00000021139.18_2	chr12	-	846	6	FSM	ENSMUSG00000021139.18	ENSMUST00000164386.8	1043	6	23	174	0	-174	multi-exon	FALSE	canonical	3	129	junction_3	83.1899032335054	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTTATGATGTTCTC	NA	False	NA	-54	True	AATAAA	-11	NA	81579656	81405807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
ENSMUSG00000021139.18_3	chr12	-	614	6	NIC	ENSMUSG00000021139.18	novel	2284	6	NA	NA	1	-1484	combination_of_known_splicesites	FALSE	canonical	3	31	junction_1	113.684827483706	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTTTCAGTCTACTTGC	NA	False	NA	0	True	ATTAAA	-20	NA	81579650	81518860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_81518946_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
ENSMUSG00000021139.18_4	chr12	-	786	6	FSM	ENSMUSG00000021139.18	ENSMUST00000166664.2	2284	6	6	1492	1	-1492	multi-exon	FALSE	canonical	3	129	junction_3	88.6715286887511	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGTATGCTTTTCAGT	NA	False	NA	-8	True	ATTAAA	-12	NA	81579650	81518868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
ENSMUSG00000021140.10_1	chr12	+	7417	34	NIC	ENSMUSG00000021140.10	novel	7827	35	NA	NA	-45	78	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	7.07392423202313	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTTGCCATGGTTT	NA	False	NA	NA	False	NA	NA	NA	81906751	82043257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_81907299_81941756_81941966_81953222_81953329_81959438_81959485_81960159_81960250_81964438_81966155_81993704_81993796_81995131_81995190_81996889_81997093_81999561_81999716_82003004_82003038_82005456_82005629_82006767_82006879_82009411_82009504_82010811_82010922_82011199_82011306_82013829_82013923_82018019_82018171_82019987_82020130_82021163_82021342_82022017_82022127_82022570_82022701_82025842_82025902_82027582_82027799_82028665_82028920_82030241_82030473_82033432_82033534_82034666_82034818_82037323_82037555_82038547_82038823_82039800_82040007_82041661_82042105_82042494_82042636_82042795
ENSMUSG00000021140.10_11	chr12	+	7609	36	NIC	ENSMUSG00000021140.10	novel	8318	36	NA	NA	-44	-47	combination_of_known_junctions	FALSE	canonical	1	2	junction_6	10.8735214805396	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAGCTGCATGAAAGGC	NA	False	NA	10	True	AATAAA	-17	NA	81906752	82043132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_81907299_81941756_81941966_81953222_81953329_81959438_81959485_81960159_81960250_81964438_81966155_81975015_81975149_81980304_81980490_81993704_81993796_81995131_81995190_81996889_81997093_81999561_81999716_82003004_82003038_82005456_82005629_82006767_82006879_82009411_82009504_82010811_82010922_82011199_82011306_82013829_82013923_82018019_82018171_82019987_82020130_82021163_82021342_82022017_82022127_82022570_82022701_82025842_82025902_82027582_82027799_82028665_82028920_82030241_82030473_82033432_82033534_82034666_82034818_82037323_82037555_82038547_82038823_82039800_82040007_82041661_82042105_82042494_82042636_82042795
ENSMUSG00000021140.10_16	chr12	+	6507	31	NIC	ENSMUSG00000021140.10	novel	12139	36	NA	NA	-471	-354	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	11.5902257671425	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCAGGACTAGCCCCTC	5755	False	NA	NA	False	AATAAA	-18	NA	81964945	82043534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_81966155_81975015_81975149_81980304_81980490_81993704_81993796_81995131_81995190_81996889_81997093_81999561_81999716_82003004_82003038_82005456_82005629_82006767_82006879_82009411_82009504_82010811_82010922_82011199_82011306_82013829_82013923_82018019_82018171_82019987_82020130_82021163_82021342_82022017_82022127_82022570_82022701_82025842_82025902_82027582_82027799_82028665_82028920_82030241_82030473_82033432_82033534_82034666_82034818_82037323_82037555_82038547_82038823_82039800_82040007_82041661_82042105_82042494_82042636_82042795
ENSMUSG00000021140.10_17	chr12	+	6318	29	NIC	ENSMUSG00000021140.10	novel	7827	35	NA	NA	-244	2	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	7.09438913105682	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGACTTGTCTATGTGG	5982	False	NA	2	True	AGTAAA	-9	NA	81965172	82043890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_81966155_81993704_81993796_81995131_81995190_81996889_81997093_81999561_81999716_82003004_82003038_82005456_82005629_82006767_82006879_82009411_82009504_82010811_82010922_82011199_82011306_82013829_82013923_82018019_82018171_82019987_82020130_82021163_82021342_82022017_82022127_82022570_82022701_82025842_82025902_82027582_82027799_82028665_82028920_82030241_82030473_82033432_82033534_82034666_82034818_82037323_82037555_82038547_82038823_82039800_82040007_82041661_82042105_82042494_82042636_82042795
ENSMUSG00000021140.10_2	chr12	+	8362	36	FSM	ENSMUSG00000021140.10	ENSMUST00000221721.2	8318	36	-43	-1	-43	1	multi-exon	FALSE	canonical	0	0	junction_6	11.0421825704146	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACAGACTTGTCTATGTG	NA	False	NA	1	True	AGTAAA	-8	NA	81906753	82043889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_81907299_81941756_81941966_81953222_81953329_81959438_81959485_81960159_81960250_81964438_81966155_81975018_81975149_81980304_81980490_81993704_81993796_81995131_81995190_81996889_81997093_81999561_81999716_82003004_82003038_82005456_82005629_82006767_82006879_82009411_82009504_82010811_82010922_82011199_82011306_82013829_82013923_82018019_82018171_82019987_82020130_82021163_82021342_82022017_82022127_82022570_82022701_82025842_82025902_82027582_82027799_82028665_82028920_82030241_82030473_82033432_82033534_82034666_82034818_82037323_82037555_82038547_82038823_82039800_82040007_82041661_82042105_82042494_82042636_82042795
ENSMUSG00000021140.10_24	chr12	+	4062	17	ISM	ENSMUSG00000021140.10	ENSMUST00000222005.2	7827	35	110955	8	-1891	1	3prime_fragment	FALSE	canonical	3	26	junction_4	7.77717011515114	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACAGACTTGTCTATGTG	NA	False	NA	1	True	AGTAAA	-8	NA	82018069	82043889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_82018171_82019987_82020130_82021163_82021342_82022017_82022127_82022570_82022701_82025842_82025902_82027582_82027799_82028665_82028920_82030241_82030473_82033432_82033534_82034666_82034818_82037323_82037555_82038547_82038823_82039800_82040007_82041661_82042105_82042494_82042636_82042795
ENSMUSG00000021140.10_27	chr12	+	2488	11	ISM	ENSMUSG00000021140.10	ENSMUST00000222005.2	7827	35	120580	751	7734	-33	3prime_fragment	FALSE	canonical	3	32	junction_6	7.40877857679658	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCAAACTCTGTTGGAG	NA	False	NA	24	True	AATAAA	-31	NA	82027694	82043146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_82027799_82028665_82028920_82030241_82030473_82033432_82033534_82034666_82034818_82037323_82037555_82038547_82038823_82039800_82040007_82041661_82042105_82042494_82042636_82042795
ENSMUSG00000021140.10_31	chr12	+	1997	5	ISM	ENSMUSG00000021140.10	ENSMUST00000222005.2	7827	35	131596	7	188	2	3prime_fragment	FALSE	canonical	3	41	junction_1	5.30919014539883	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGACTTGTCTATGTGG	NA	False	NA	2	True	AGTAAA	-9	NA	82038710	82043890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_82038823_82039800_82040007_82041661_82042105_82042494_82042636_82042795
ENSMUSG00000021140.10_34	chr12	+	3649	1	FSM	ENSMUSG00000113622.2	ENSMUST00000223212.2	652	1	-3007	10	-3007	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTTTGCCTTCTGTCA	NA	False	NA	NA	False	AATAAA	-6	NA	82044034	82047683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_82044000_82047700
ENSMUSG00000021143.11_0	chr12	+	5414	24	FSM	ENSMUSG00000021143.11	ENSMUST00000084891.5	5480	24	-61	127	-61	-112	multi-exon	FALSE	canonical	3	64	junction_11	15.2637802253402	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAATAGCTTTTTTTGG	1318	False	NA	-99	True	AATAAA	-12	NA	112978066	113037894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112978303_113007845_113007934_113009097_113009188_113010648_113010775_113013426_113013590_113014136_113014211_113014500_113014582_113015850_113015911_113020429_113020588_113023342_113023434_113023702_113023781_113024248_113024392_113024692_113024826_113025259_113025365_113025468_113025576_113026066_113026222_113026951_113027063_113027449_113027559_113031696_113031740_113032599_113032643_113032901_113033044_113033676_113033904_113034287_113034402_113035157
ENSMUSG00000021143.11_2	chr12	+	5437	24	FSM	ENSMUSG00000021143.11	ENSMUST00000223502.2	3223	24	-78	-2136	-78	-112	multi-exon	TRUE	canonical	3	14	junction_13	23.2409910997097	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAATAGCTTTTTTTGG	1301	False	NA	-99	True	AATAAA	-12	NA	112978049	113037894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112978303_113007845_113007934_113009097_113009188_113010648_113010775_113013426_113013590_113014136_113014211_113014500_113014582_113015850_113015911_113020429_113020588_113023342_113023434_113023702_113023781_113024248_113024392_113024692_113024832_113025259_113025365_113025468_113025576_113026066_113026222_113026951_113027063_113027449_113027559_113031696_113031740_113032599_113032643_113032901_113033044_113033676_113033904_113034287_113034402_113035157
ENSMUSG00000021143.11_54	chr12	+	2372	1	ISM	ENSMUSG00000021143.11	ENSMUST00000084891.5	5480	24	57503	19	1339	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCTGTGATTTCTCTGA	NA	False	NA	9	True	AATAAA	-21	NA	113035630	113038002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_113035600_113038000
ENSMUSG00000021144.15_1	chr12	+	2840	21	NIC	ENSMUSG00000021144.15	novel	2826	21	NA	NA	-30	-15	combination_of_known_junctions	FALSE	canonical	3	59	junction_17	171.479699964748	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGAAAACCCCACCAA	9293	False	NA	8	True	ATTAAA	-25	NA	113061867	113100810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_113062066_113075765_113075834_113080607_113080702_113083830_113083882_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113097160_113097197_113099416_113099449_113099900_113100053_113100137
ENSMUSG00000021144.15_2	chr12	+	2752	19	NIC	ENSMUSG00000021144.15	novel	2789	20	NA	NA	-31	15	combination_of_known_junctions	FALSE	canonical	3	225	junction_3	92.1761598486531	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAGGAAAACCCCACC	9292	False	NA	6	True	ATTAAA	-23	NA	113061866	113100808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_113062066_113075765_113075834_113080607_113080702_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
ENSMUSG00000021144.15_3	chr12	+	2802	20	FSM	ENSMUSG00000021144.15	ENSMUST00000109727.9	2789	20	-30	17	-30	15	multi-exon	FALSE	canonical	3	192	junction_4	117.588629860953	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAGGAAAACCCCACC	9293	False	NA	6	True	ATTAAA	-23	NA	113061867	113100808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_113062066_113075765_113075834_113080607_113080702_113083830_113083882_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
ENSMUSG00000021144.15_4	chr12	+	2769	20	FSM	ENSMUSG00000021144.15	ENSMUST00000109726.8	2775	20	-37	43	-37	-10	multi-exon	FALSE	canonical	3	59	junction_16	163.105730200924	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAACAAAGAAAAAA	9286	False	NA	-19	True	NA	NA	NA	113061860	113100783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_113062066_113075765_113075834_113080607_113080702_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113097160_113097197_113099416_113099449_113099900_113100053_113100137
ENSMUSG00000021147.18_0	chr13	-	4491	14	FSM	ENSMUSG00000021147.18	ENSMUST00000021572.11	4526	14	32	3	-5	-3	multi-exon	FALSE	canonical	3	54	junction_4	12.9902102419544	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTACTATTATAAAGGTT	NA	False	NA	-32	True	ATTAAA	-15	NA	8921048	8853033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
ENSMUSG00000021147.18_10	chr13	-	1365	1	ISM	ENSMUSG00000021147.18	ENSMUST00000054251.13	4626	14	67367	31	32871	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTACTATTATAAAGGT	4413	False	NA	-33	True	ATTAAA	-14	NA	8854399	8853034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_8853000_8854400
ENSMUSG00000021147.18_3	chr13	-	4426	15	NNC	ENSMUSG00000021147.18	novel	4526	14	NA	NA	-5	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	21.7040624430223	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTACTATTATAAAGGT	NA	False	NA	-33	True	ATTAAA	-14	NA	8921064	8853034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_8854360_8854439_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
ENSMUSG00000021147.18_34	chr13	-	3765	5	FSM	ENSMUSG00000021147.18	ENSMUST00000176922.8	3780	5	9	6	-7	-6	multi-exon	FALSE	canonical	3	80	junction_4	6.36396103067893	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTCCTCATCTGTTACA	NA	False	NA	NA	False	NA	NA	NA	8921050	8900521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
ENSMUSG00000021147.18_36	chr13	-	3549	5	FSM	ENSMUSG00000021147.18	ENSMUST00000164183.9	1780	5	85	-1854	85	-335	multi-exon	FALSE	canonical	3	18	junction_4	30.7774267930248	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCATAGACTCATCATTC	NA	False	NA	NA	False	ATTAAA	-24	NA	8920930	8900850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920672
ENSMUSG00000021147.18_5	chr13	-	4587	14	NIC	ENSMUSG00000021147.18	novel	4526	14	NA	NA	103	-4	intron_retention	FALSE	canonical	3	18	junction_13	18.3112472308122	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTACTATTATAAAGGT	NA	False	NA	-33	True	ATTAAA	-14	NA	8920912	8853034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920672
ENSMUSG00000021149.9_2	chr13	-	2419	17	FSM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	61	6303	28	-154	multi-exon	FALSE	canonical	3	688	junction_6	47.6523871385264	954	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACATAGTTTGATGACT	NA	False	NA	-23	True	AGTAAA	-9	NA	9046058	9022669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
ENSMUSG00000021156.18_0	chr13	-	3910	15	NIC	ENSMUSG00000021156.18	novel	4117	15	NA	NA	6	-6	combination_of_known_junctions	FALSE	canonical	3	65	junction_14	30.2476175482787	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9814448	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814381
ENSMUSG00000021156.18_10	chr13	-	2262	2	FSM	ENSMUSG00000021156.18	ENSMUST00000137932.2	4355	2	2087	6	1324	-6	multi-exon	FALSE	canonical	3	141	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9739222	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_9737021_9739098
ENSMUSG00000021156.18_11	chr13	-	3937	14	FSM	ENSMUSG00000021156.18	ENSMUST00000110638.8	4003	14	55	11	-10	-6	multi-exon	FALSE	canonical	3	27	junction_3	41.8502543239853	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9814469	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740313_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9814381
ENSMUSG00000021156.18_15	chr13	-	3782	14	FSM	ENSMUSG00000021156.18	ENSMUST00000062658.15	3796	14	5	9	5	-6	multi-exon	FALSE	canonical	3	34	junction_13	37.5302639220559	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9815191	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9815090
ENSMUSG00000021156.18_18	chr13	-	3958	15	FSM	ENSMUSG00000021156.18	ENSMUST00000110636.9	4117	15	145	14	-9	-6	multi-exon	FALSE	canonical	3	34	junction_14	35.3204716033877	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9815205	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9815090
ENSMUSG00000021156.18_20	chr13	-	3550	5	ISM	ENSMUSG00000021156.18	ENSMUST00000222475.2	1551	12	43663	-2020	-513	-6	3prime_fragment	FALSE	canonical	3	110	junction_3	12.5896783120142	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9741822	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938
ENSMUSG00000021156.18_27	chr13	-	4025	14	NIC	ENSMUSG00000021156.18	novel	4003	14	NA	NA	-30	-6	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	42.6016362160425	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9814939	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740313_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9814763
ENSMUSG00000021156.18_3	chr13	-	4074	15	FSM	ENSMUSG00000021156.18	ENSMUST00000110634.8	3824	15	-2	-248	-2	-6	multi-exon	FALSE	canonical	3	58	junction_14	31.2871004259139	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9814994	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814763
ENSMUSG00000021156.18_4	chr13	-	3758	14	FSM	ENSMUSG00000021156.18	ENSMUST00000110637.8	3770	14	1	11	1	-6	multi-exon	FALSE	canonical	3	61	junction_11	32.3144681539246	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9814458	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9814381
ENSMUSG00000021156.18_5	chr13	-	4075	15	NIC	ENSMUSG00000021156.18	novel	3824	15	NA	NA	9	-6	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	39.4736414249679	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9814445	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740313_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814381
ENSMUSG00000021156.18_6	chr13	-	4124	15	NIC	ENSMUSG00000021156.18	novel	4117	15	NA	NA	-7	-6	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	43.1802108869896	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9815203	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740313_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9815090
ENSMUSG00000021156.18_7	chr13	-	4238	15	NIC	ENSMUSG00000021156.18	novel	3824	15	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	40.2020407645265	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9814990	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740313_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814763
ENSMUSG00000021156.18_8	chr13	-	3884	14	NIC	ENSMUSG00000021156.18	novel	3824	15	NA	NA	7	-6	combination_of_known_junctions	FALSE	canonical	3	58	junction_13	33.3849698669589	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCCAACAACTCTTG	NA	False	NA	-12	True	AATAAA	-8	NA	9814966	9734882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9814763
ENSMUSG00000021171.9_0	chr12	+	5510	22	FSM	ENSMUSG00000021171.9	ENSMUST00000100986.4	5560	22	49	1	-6	-1	multi-exon	FALSE	canonical	3	167	junction_13	20.3537869692824	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGTAATATGTTTTTTGT	NA	False	NA	4	True	AATAAA	-17	NA	116244864	116336710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_116245293_116281449_116281492_116282423_116282559_116284746_116284824_116287459_116287533_116287740_116287831_116297820_116297877_116303166_116303288_116305695_116305873_116307057_116307141_116310123_116310173_116311345_116311436_116311838_116311935_116320731_116320807_116321467_116321555_116327014_116327165_116329174_116329549_116330549_116330649_116331327_116331460_116332355_116332462_116333631_116333682_116333790
ENSMUSG00000021171.9_42	chr12	+	2003	1	ISM	ENSMUSG00000021171.9	ENSMUST00000100986.4	5560	22	89892	1	14169	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGTAATATGTTTTTTGT	NA	False	NA	4	True	AATAAA	-17	NA	116334707	116336710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_116334700_116336700
ENSMUSG00000021175.16_0	chr12	+	2680	10	FSM	ENSMUSG00000021175.16	ENSMUST00000021592.16	2957	10	276	1	-93	-1	multi-exon	FALSE	canonical	3	107	junction_2	34.4673758792282	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTTGTCACCTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	117807525	117842440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_117807693_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
ENSMUSG00000021175.16_1	chr12	+	2690	10	NIC	ENSMUSG00000021175.16	novel	2957	10	NA	NA	-106	-1	combination_of_known_junctions	FALSE	canonical	3	109	junction_2	33.9643967547428	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTTGTCACCTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	117807512	117842440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_117807693_117828764_117828900_117833743_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
ENSMUSG00000021176.7_1	chr12	-	2066	6	FSM	ENSMUSG00000021176.7	ENSMUST00000046485.5	2068	6	-2	4	-2	-4	multi-exon	FALSE	canonical	3	69	junction_2	7.87400787401181	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATATCATATTTATGGTA	NA	False	NA	-10	True	ATTAAA	-19	NA	99849703	99683794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
ENSMUSG00000021176.7_4	chr12	-	1736	1	Genic_Genomic	ENSMUSG00000021176.7	novel	NA	NA	NA	NA	165021	1431	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCAGCTGGAGTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	99684095	99682359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_99682400_99684100
ENSMUSG00000021176.7_5	chr12	-	2051	6	NIC	ENSMUSG00000021176.7	novel	2068	6	NA	NA	-9	-3	combination_of_known_junctions	TRUE	canonical	2	9	junction_4	27.0673234731475	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATCATATTTATGGTAT	NA	False	NA	-9	True	ATTAAA	-20	NA	99849691	99683793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615_99844658_99849020_99849117_99849540
ENSMUSG00000021176.7_8	chr12	-	4705	5	ISM	ENSMUSG00000021176.7	ENSMUST00000223114.2	1122	7	998	131697	7	25217	internal_fragment	FALSE	canonical	3	69	junction_1	8.5146931829632	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTTCTTAGTCAACTT	NA	False	NA	NA	False	AATAAA	-21	NA	99849673	99816631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
ENSMUSG00000021176.7_9	chr12	-	379	3	FSM	ENSMUSG00000021176.7	ENSMUST00000221801.2	3131	3	54	2698	-7	47	multi-exon	FALSE	canonical	3	83	junction_2	4.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAGTTGGTATGTCATTA	NA	False	NA	NA	False	ATTAAA	-3	NA	99849708	99844546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_99844662_99849020_99849117_99849540
ENSMUSG00000021177.17_0	chr12	+	2049	16	FSM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	-18	5	2	0	multi-exon	FALSE	canonical	3	362	junction_1	45.8998910674089	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTACAGGCCTGG	NA	False	NA	14	True	ATTAAA	-14	NA	99850777	99921473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ENSMUSG00000021177.17_1	chr12	+	1825	14	NIC	ENSMUSG00000021177.17	novel	3945	14	NA	NA	2	3	combination_of_known_junctions	FALSE	canonical	3	48	junction_13	129.038226527357	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGTGAGACCTTTAAGA	NA	False	NA	6	True	NA	NA	NA	99850777	99885566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99885326
ENSMUSG00000021177.17_43	chr12	+	2018	15	FSM	ENSMUSG00000021177.17	ENSMUST00000021594.5	2019	15	0	1	0	-1	multi-exon	FALSE	canonical	3	436	junction_14	30.3943469502243	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATGTGTACAGGCCTG	NA	False	NA	13	True	ATTAAA	-13	NA	99857431	99921472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ENSMUSG00000021177.17_5	chr12	+	2292	17	NIC	ENSMUSG00000021177.17	novel	2036	16	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	153.9589915976	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTACAGGCCTGG	NA	False	NA	14	True	ATTAAA	-14	NA	99850777	99921473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_99850812_99852736_99852980_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ENSMUSG00000021178.10_0	chr12	+	1531	11	FSM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	19	41	19	-41	multi-exon	FALSE	canonical	3	1446	junction_1	298.758363899657	1762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACTGTAATGAGTACCAT	3992	False	NA	17	True	AATAAA	-23	NA	100076431	100089623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
ENSMUSG00000021178.10_37	chr12	+	1493	10	ISM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	2176	41	2115	-41	3prime_fragment	FALSE	canonical	3	2088	junction_7	130.11229717649	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACTGTAATGAGTACCAT	6149	False	NA	17	True	AATAAA	-23	NA	100078588	100089623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
ENSMUSG00000021179.9_4	chr12	-	3701	14	FSM	ENSMUSG00000021179.9	ENSMUST00000021596.9	3718	14	16	1	16	-1	multi-exon	FALSE	canonical	2	41	junction_5	13.3828469211889	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGTGCAGCTTCTTAT	8572	False	NA	-6	True	GATAAA	-14	NA	100125891	100091711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_100091991_100092459_100092532_100095553_100095693_100096616_100097543_100098409_100098797_100100615_100100792_100103916_100104038_100106263_100106398_100108151_100108558_100109997_100110449_100112128_100112288_100116075_100116310_100117469_100117594_100125798
ENSMUSG00000021179.9_5	chr12	-	3686	14	NIC	ENSMUSG00000021179.9	novel	3718	14	NA	NA	16	-1	combination_of_known_junctions	FALSE	canonical	2	17	junction_12	19.2473774437334	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGTGCAGCTTCTTAT	8572	False	NA	-6	True	GATAAA	-14	NA	100125891	100091711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_100091991_100092459_100092532_100095553_100095693_100096616_100097543_100098409_100098797_100100615_100100792_100103916_100104038_100106263_100106398_100108151_100108558_100109997_100110449_100112128_100112288_100116075_100116310_100117484_100117594_100125798
ENSMUSG00000021179.9_7	chr12	-	2960	10	ISM	ENSMUSG00000021179.9	ENSMUST00000021596.9	3718	14	15590	1	-14286	-1	3prime_fragment	TRUE	canonical	2	41	junction_5	11.4114951790825	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGTGCAGCTTCTTAT	NA	False	NA	-6	True	GATAAA	-14	NA	100110317	100091711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_100091991_100092459_100092532_100095553_100095693_100096616_100097543_100098409_100098797_100100615_100100792_100103916_100104038_100106263_100106398_100108151_100108558_100109997
ENSMUSG00000021180.10_0	chr12	-	4278	17	FSM	ENSMUSG00000021180.10	ENSMUST00000222731.2	5642	17	21	1343	21	-4	multi-exon	FALSE	canonical	3	13	junction_6	9.17196816392207	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGCTTTGGGTCATTTCT	NA	False	NA	NA	False	AATAAA	-12	NA	100691358	100516040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_100517943_100519259_100519424_100520532_100520693_100524707_100524900_100537087_100537259_100540689_100540784_100541381_100541516_100541893_100542020_100543980_100544143_100547554_100547706_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
ENSMUSG00000021180.10_10	chr12	-	1222	8	NIC	ENSMUSG00000021180.10	novel	1039	8	NA	NA	16	14	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	9.9979589753844	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTAGACTGTTTCAAG	NA	False	NA	NA	False	NA	NA	NA	100691363	100560628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_100560824_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
ENSMUSG00000021180.10_14	chr12	-	5411	15	NIC	ENSMUSG00000021180.10	novel	5642	17	NA	NA	36	-7	combination_of_known_splicesites	FALSE	canonical	1	1	junction_13	10.0511447210794	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTAAATATGAACTCAAGT	NA	False	NA	-11	True	AATAAA	-12	NA	100691343	100514704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_100517943_100519259_100519424_100520532_100520693_100524707_100524900_100537087_100537259_100540689_100540784_100541381_100541516_100541893_100542020_100543980_100544143_100547554_100547706_100562073_100562178_100564148_100564233_100582255_100582364_100620529_100620749_100691039
ENSMUSG00000021180.10_2	chr12	-	5503	16	NIC	ENSMUSG00000021180.10	novel	5642	17	NA	NA	20	-3	combination_of_known_junctions	TRUE	canonical	1	1	junction_13	10.6387133725006	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATGAACTCAAGTATTT	NA	False	NA	-7	True	AATAAA	-16	NA	100691359	100514700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_100517943_100519259_100519424_100520532_100520693_100524707_100524900_100537087_100537259_100540689_100540784_100541381_100541516_100541893_100542020_100543980_100544143_100547554_100547706_100562073_100562178_100564148_100564233_100582255_100582364_100620529_100620749_100644776_100644849_100691039
ENSMUSG00000021180.10_4	chr12	-	2041	1	ISM	ENSMUSG00000021180.10	ENSMUST00000222731.2	5642	17	174638	3	10047	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATGAACTCAAGTATTT	4074	False	NA	-7	True	AATAAA	-16	NA	100516741	100514700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_100514700_100516700
ENSMUSG00000021180.10_5	chr12	-	5505	16	NIC	ENSMUSG00000021180.10	novel	5642	17	NA	NA	-39	-12	combination_of_known_splicesites	FALSE	canonical	1	4	junction_15	9.65539572812356	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTATCTAAATATGAACT	NA	False	NA	-16	True	AATAAA	-7	NA	100691326	100514709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_100517943_100519259_100519424_100520532_100520693_100524707_100524900_100537087_100537259_100540689_100540784_100541381_100541516_100541893_100542020_100543980_100544143_100547554_100547706_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100691039
ENSMUSG00000021180.10_9	chr12	-	2667	13	ISM	ENSMUSG00000021180.10	ENSMUST00000222731.2	5642	17	15	21589	15	-15669	5prime_fragment	FALSE	canonical	3	13	junction_2	8.96133670584671	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATTAATGGGCTTGAT	NA	False	NA	NA	False	AATATA	-16	NA	100691364	100536286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_100537259_100540689_100540784_100541381_100541516_100541893_100542020_100543980_100544143_100547554_100547706_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
ENSMUSG00000021182.17_0	chr12	-	1472	1	ISM	ENSMUSG00000021182.17	ENSMUST00000068411.5	7542	30	116061	1	9619	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGCCCTGGTTTTCTTC	8823	False	NA	-4	True	AATAAA	-16	NA	100879254	100877782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_100877800_100879300
ENSMUSG00000021182.17_2	chr12	-	5101	16	ISM	ENSMUSG00000021182.17	ENSMUST00000068411.5	7542	30	83698	1	-185	-1	3prime_fragment	TRUE	canonical	3	67	junction_4	25.2186879560024	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGCCCTGGTTTTCTTC	NA	False	NA	-4	True	AATAAA	-16	NA	100911617	100877782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100889438_100889628_100895085_100895325_100896773_100896864_100898026_100898173_100899417_100899605_100901884_100902029_100904088_100904367_100905255_100905418_100906343_100906530_100907367_100907495_100908255_100908384_100911105
ENSMUSG00000021182.17_21	chr12	-	3331	5	NIC	ENSMUSG00000021182.17	novel	7542	30	NA	NA	78	-1	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	44.9471912359382	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGCCCTGGTTTTCTTC	NA	False	NA	-4	True	AATAAA	-16	NA	100889068	100877782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100888450
ENSMUSG00000021182.17_26	chr12	-	3850	11	ISM	ENSMUSG00000021182.17	ENSMUST00000068411.5	7542	30	91085	1	7202	-1	3prime_fragment	FALSE	canonical	3	67	junction_4	29.7482772610449	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGCCCTGGTTTTCTTC	3975	False	NA	-4	True	AATAAA	-16	NA	100904230	100877782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100889438_100889628_100895085_100895325_100896773_100896864_100898026_100898173_100899417_100899605_100901884_100902029_100904088
ENSMUSG00000021182.17_5	chr12	-	7414	30	FSM	ENSMUSG00000021182.17	ENSMUST00000068411.5	7542	30	126	2	-21	-2	multi-exon	FALSE	canonical	3	67	junction_4	21.6322633049711	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGCCCTGGTTTTCTT	NA	False	NA	-5	True	AATAAA	-15	NA	100995189	100877783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100889438_100889628_100895085_100895325_100896773_100896864_100898026_100898173_100899417_100899605_100901884_100902029_100904088_100904367_100905255_100905418_100906343_100906530_100907367_100907495_100908255_100908384_100911105_100912168_100913358_100913497_100914705_100914891_100919545_100919691_100920422_100920570_100932197_100932357_100932638_100932721_100934066_100934252_100934512_100934654_100936650_100936735_100937479_100937539_100950158_100950229_100988552_100988662_100994494_100994596_100995030
ENSMUSG00000021182.17_9	chr12	-	3340	4	ISM	ENSMUSG00000021182.17	ENSMUST00000068411.5	7542	30	106832	3	390	-3	3prime_fragment	FALSE	canonical	3	124	junction_3	15.06283137026	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGAGCCCTGGTTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	100888483	100877784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785
ENSMUSG00000021185.17_0	chr12	+	2946	13	FSM	ENSMUSG00000021185.17	ENSMUST00000069782.11	3295	13	83	266	4	-4	multi-exon	FALSE	canonical	2	6	junction_10	4.43471156521669	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAGAAAATCTTTAGTAT	NA	False	NA	NA	False	AATAAA	-11	NA	100745398	100838603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_100745570_100795857_100795985_100801443_100801595_100804758_100804958_100807629_100807781_100808901_100809025_100810988_100811190_100816371_100816633_100819472_100819573_100823179_100823329_100825791_100825912_100833362_100833515_100837562
ENSMUSG00000021186.10_0	chr12	-	2299	11	FSM	ENSMUSG00000021186.10	ENSMUST00000021603.9	5829	11	152	3378	56	-6	multi-exon	FALSE	canonical	3	12	junction_2	1.74355957741627	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAATCTTGTGTTTGGTT	NA	False	NA	NA	False	ATTAAA	-7	NA	101785162	101716201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_101717163_101723514_101723711_101726959_101727087_101728060_101728184_101731414_101731535_101734651_101734769_101737503_101737627_101775974_101776230_101778412_101778465_101780800_101780856_101784992
ENSMUSG00000021187.15_0	chr12	-	178	1	ISM	ENSMUSG00000021187.15	ENSMUST00000162735.8	5290	12	70898	2005	61911	-883	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAACTTTC	NA	False	NA	NA	False	NA	NA	NA	101613884	101613706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_101613700_101613900
ENSMUSG00000021187.15_1	chr12	-	5155	12	FSM	ENSMUSG00000021187.15	ENSMUST00000162735.8	5290	12	2	133	2	-133	multi-exon	FALSE	canonical	0	0	junction_3	2.40522846460417	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGACTAGGAAGATGTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	101684780	101611834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_101615465_101617250_101617451_101618997_101619113_101631811_101632004_101644772_101644890_101655218_101655320_101656035_101656112_101659373_101659466_101660764_101660933_101672641_101672873_101675682_101675796_101684660
ENSMUSG00000021188.15_1	chr12	-	6137	11	ISM	ENSMUSG00000021188.15	ENSMUST00000177183.8	5076	15	9791	-3484	-918	-19	3prime_fragment	FALSE	canonical	3	18	junction_5	4.10365690573664	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGATATAAATTGGCT	NA	False	NA	NA	False	NA	NA	NA	101850784	101800320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_101804026_101811038_101811184_101811316_101811434_101811990_101812106_101812854_101812937_101828851_101828952_101838082_101838187_101839581_101839746_101844213_101844408_101845047_101845189_101849514
ENSMUSG00000021188.15_10	chr12	-	4608	9	ISM	ENSMUSG00000021188.15	ENSMUST00000177183.8	5076	15	16286	-3484	5577	-19	3prime_fragment	FALSE	canonical	3	18	junction_5	4.39992897669951	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGATATAAATTGGCT	NA	False	NA	NA	False	NA	NA	NA	101844289	101800320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_101804026_101811038_101811184_101811316_101811434_101811990_101812106_101812854_101812937_101828851_101828952_101838082_101838187_101839581_101839746_101844213
ENSMUSG00000021188.15_13	chr12	-	6385	21	NIC	ENSMUSG00000021188.15	novel	9873	21	NA	NA	7	152	combination_of_known_junctions	FALSE	canonical	3	7	junction_20	5.42678542048605	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTGCAGGTGTCAGAA	7555	False	NA	NA	False	AATAAA	-19	NA	101879392	101803652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_101804026_101811038_101811184_101811316_101811434_101811990_101812106_101812854_101812937_101828851_101828952_101838082_101838187_101839581_101839746_101844213_101844408_101845047_101845189_101849514_101852536_101853066_101853280_101855963_101856051_101856836_101856878_101859689_101860053_101860520_101860687_101861909_101861976_101865083_101865363_101868490_101868602_101872013_101872073_101878948
ENSMUSG00000021188.15_2	chr12	-	8125	21	FSM	ENSMUSG00000021188.15	ENSMUST00000021605.14	9873	21	133	1615	6	-1615	multi-exon	TRUE	canonical	3	11	junction_20	4.94064773081425	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGAGCATTTGTTTGCTC	7554	False	NA	NA	False	NA	NA	NA	101879393	101801916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_101804026_101811038_101811184_101811316_101811434_101811990_101812106_101812854_101812937_101828851_101828952_101838082_101838187_101839581_101839746_101844213_101844408_101845047_101845189_101849514_101852536_101853066_101853280_101855963_101856051_101856836_101856878_101859689_101860053_101860520_101860687_101861909_101861976_101865083_101865363_101868490_101868602_101872013_101872076_101878948
ENSMUSG00000021188.15_6	chr12	-	4044	4	ISM	ENSMUSG00000021188.15	ENSMUST00000177183.8	5076	15	48558	-3534	37849	31	3prime_fragment	TRUE	canonical	3	24	junction_3	2.94392028877595	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCTGCCGGTGTCTGT	7093	False	NA	NA	False	AATAAA	-11	NA	101812017	101800270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_101804026_101811038_101811184_101811316_101811434_101811990
ENSMUSG00000021188.15_7	chr12	-	2301	1	ISM	ENSMUSG00000021188.15	ENSMUST00000021605.14	9873	21	76914	10	47254	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATTGGCTGTGTCTTCG	7288	False	NA	NA	False	AATAAA	-7	NA	101802612	101800311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_101800300_101802600
ENSMUSG00000021188.15_8	chr12	-	4427	8	ISM	ENSMUSG00000021188.15	ENSMUST00000177183.8	5076	15	20946	-3495	10237	-8	3prime_fragment	FALSE	canonical	3	18	junction_5	4.22335585688414	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGGCTGTGTCTTCGTC	NA	False	NA	NA	False	AATAAA	-9	NA	101839629	101800309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_101804026_101811038_101811184_101811316_101811434_101811990_101812106_101812854_101812937_101828851_101828952_101838082_101838187_101839581
ENSMUSG00000021189.12_0	chr12	-	5309	11	FSM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	49	5	46	-5	multi-exon	FALSE	canonical	3	190	junction_2	46.8375917399689	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAACCTTTCTCTATTTCT	NA	False	NA	-10	True	AATAAA	-15	NA	101924456	101885164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUSG00000021189.12_1	chr12	-	2229	1	ISM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	37115	2	13224	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTTCTCTATTTCTAAT	NA	False	NA	-7	True	AATAAA	-18	NA	101887390	101885161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_101885200_101887400
ENSMUSG00000021189.12_11	chr12	-	5178	12	NNC	ENSMUSG00000021189.12	novel	5363	11	NA	NA	44	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	94.0196040749653	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTTCTCTATTTCTAAT	NA	False	NA	-7	True	AATAAA	-18	NA	101924458	101885161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_101886990_101887125_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUSG00000021189.12_70	chr12	-	943	9	FSM	ENSMUSG00000021189.12	ENSMUST00000161011.8	1000	9	59	-2	-36	0	multi-exon	FALSE	canonical	3	289	junction_2	19.5380238253514	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTGTCTGTTTATAAA	NA	False	NA	0	True	ATTAAA	-21	NA	101924443	101899182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUSG00000021189.12_8	chr12	-	5308	11	NIC	ENSMUSG00000021189.12	novel	5363	11	NA	NA	44	-5	combination_of_known_junctions	FALSE	canonical	3	37	junction_9	87.9545337091841	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAACCTTTCTCTATTTCT	NA	False	NA	-10	True	AATAAA	-15	NA	101924458	101885164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914305_101914533_101914699_101924392
ENSMUSG00000021190.15_2	chr12	-	1885	14	FSM	ENSMUSG00000021190.15	ENSMUST00000021607.9	1990	14	117	-12	117	-2	multi-exon	FALSE	canonical	3	371	junction_3	48.4071734133467	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGACTCTGGCTTTGTGGTT	7606	False	NA	-5	True	AAAACA	-27	NA	102405955	102360344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843_102390015_102405889
ENSMUSG00000021190.15_4	chr12	-	1602	12	ISM	ENSMUSG00000021190.15	ENSMUST00000110020.8	1835	13	10252	3	-7371	-3	3prime_fragment	FALSE	canonical	3	371	junction_3	49.2859760785614	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGACTCTGGCTTTGTGGT	NA	False	NA	-6	True	AAAACA	-26	NA	102379776	102360345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723
ENSMUSG00000021192.17_1	chr12	+	2782	13	FSM	ENSMUSG00000021192.17	ENSMUST00000179218.9	2827	13	42	3	-15	-3	multi-exon	FALSE	canonical	3	120	junction_3	16.7257286836777	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATTTAGAGTGCTTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	102435435	102464161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_102435623_102438256_102438825_102440804_102441033_102442428_102442649_102443055_102443180_102445856_102446061_102450662_102450834_102453378_102453508_102455677_102455777_102458271_102458498_102460012_102460119_102461958_102462023_102463705
ENSMUSG00000021192.17_3	chr12	+	3376	13	FSM	ENSMUSG00000021192.17	ENSMUST00000021609.10	3390	13	12	2	12	0	multi-exon	FALSE	canonical	2	10	junction_1	41.9333962638637	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGAGTGCTTTATATT	NA	False	NA	NA	False	AATAAA	-18	NA	102435462	102464164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_102436241_102438256_102438825_102440804_102441033_102442428_102442649_102443055_102443180_102445856_102446061_102450662_102450834_102453378_102453508_102455677_102455777_102458271_102458498_102460012_102460119_102461958_102462023_102463705
ENSMUSG00000021193.11_0	chr13	+	3411	27	NIC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	5	-6	combination_of_known_junctions	TRUE	canonical	3	577	junction_1	112.248614598533	1032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGTCTGAGTTTTACTC	NA	False	NA	10	True	TATAAA	-11	NA	6598199	6630072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
ENSMUSG00000021193.11_1	chr13	+	3414	27	FSM	ENSMUSG00000021193.11	ENSMUST00000222485.2	3906	27	13	479	5	-6	multi-exon	FALSE	canonical	3	407	junction_1	134.848435629472	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGTCTGAGTTTTACTC	NA	False	NA	10	True	TATAAA	-11	NA	6598199	6630072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
ENSMUSG00000021194.7_0	chr12	+	1873	8	FSM	ENSMUSG00000021194.7	ENSMUST00000021610.7	1883	8	8	2	8	-2	multi-exon	TRUE	canonical	3	24	junction_1	6.51841974088562	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTCTTTGATTTATTTT	NA	False	NA	22	True	AATAAA	-16	NA	102521235	102531285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_102521430_102522143_102522191_102524724_102524819_102525547_102525617_102527603_102527763_102527925_102528343_102528856_102529333_102530868
ENSMUSG00000021194.7_4	chr12	+	873	2	ISM	ENSMUSG00000021194.7	ENSMUST00000021610.7	1883	8	7637	14	4538	-14	3prime_fragment	FALSE	canonical	3	41	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGGCTCTTTGCTTTCT	NA	False	NA	10	True	AATAAA	-4	NA	102528864	102531273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_102529333_102530868
ENSMUSG00000021194.7_5	chr12	+	416	1	ISM	ENSMUSG00000021194.7	ENSMUST00000021610.7	1883	8	9642	2	6543	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTCTTTGATTTATTTT	NA	False	NA	22	True	AATAAA	-16	NA	102530869	102531285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_102530900_102531300
ENSMUSG00000021196.15_0	chr13	-	3209	6	FSM	ENSMUSG00000021196.15	ENSMUST00000131648.8	2680	6	-1937	1408	-1937	6	multi-exon	FALSE	canonical	3	1227	junction_2	102.634107391257	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGGTACTTGGTTTATT	7846	False	NA	-8	True	ATTAAA	-16	NA	6640939	6631211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524
ENSMUSG00000021196.15_4	chr13	-	2697	22	FSM	ENSMUSG00000021196.15	ENSMUST00000138703.8	4145	22	36	1412	-16	2	multi-exon	FALSE	canonical	3	963	junction_15	143.890705562911	1756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCCCATGGTACTTGGTT	NA	False	NA	-12	True	ATTAAA	-12	NA	6698777	6631215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
ENSMUSG00000021200.15_0	chr12	-	638	2	ISM	ENSMUSG00000021200.15	ENSMUST00000127447.2	2399	6	11715	-2	11715	-2	3prime_fragment	FALSE	canonical	3	41	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCTGCCCTGTGATTCC	NA	False	NA	-4	True	AATAAA	-13	NA	103290128	103287402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_103287934_103290021
ENSMUSG00000021200.15_1	chr12	-	1145	3	ISM	ENSMUSG00000021200.15	ENSMUST00000127447.2	2399	6	10070	0	10070	0	3prime_fragment	FALSE	canonical	3	27	junction_2	7	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTTCTGCCCTGTGATT	NA	False	NA	-6	True	AATAAA	-11	NA	103291773	103287404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_103287934_103290021_103290176_103291311
ENSMUSG00000021203.16_0	chr12	+	2799	6	FSM	ENSMUSG00000021203.16	ENSMUST00000021620.13	2791	6	-14	6	2	0	multi-exon	FALSE	canonical	3	84	junction_1	8.60232526704263	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAACTGTCAGTCTGGCT	8162	False	NA	NA	False	ATTAAA	-10	NA	103354942	103372598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_103355133_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
ENSMUSG00000021203.16_1	chr12	+	3133	5	FSM	ENSMUSG00000021203.16	ENSMUST00000141055.2	3055	5	-84	6	0	0	multi-exon	FALSE	canonical	3	84	junction_1	9.35414346693485	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAACTGTCAGTCTGGCT	8160	False	NA	NA	False	ATTAAA	-10	NA	103354940	103372598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_103355133_103366454_103366551_103367207_103367327_103369075_103369688_103370484
ENSMUSG00000021203.16_4	chr12	+	2753	6	NIC	ENSMUSG00000021203.16	novel	424	4	NA	NA	-22	-2	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	32.5047688808888	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACAACTGTCAGTCTGG	8441	False	NA	NA	False	ATTAAA	-8	NA	103355221	103372596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_103355368_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
ENSMUSG00000021203.16_8	chr12	+	1459	1	ISM	ENSMUSG00000021203.16	ENSMUST00000101094.9	3228	7	16199	0	12227	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAACTGTCAGTCTGGCT	NA	False	NA	NA	False	ATTAAA	-10	NA	103371139	103372598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_103371100_103372600
ENSMUSG00000021209.13_0	chr12	+	3798	25	FSM	ENSMUSG00000021209.13	ENSMUST00000021631.12	3964	25	159	7	-128	-7	multi-exon	FALSE	canonical	0	0	junction_4	1.55232800084976	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGATACCTGTATTTGT	NA	False	NA	NA	False	AATAAA	-10	NA	103498700	103580083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_103499002_103500329_103500404_103524626_103524730_103542539_103542688_103543093_103543168_103545250_103545358_103547637_103547746_103550314_103550437_103551965_103552089_103553209_103553380_103553695_103553816_103557037_103557116_103557785_103557870_103559254_103559438_103562649_103562756_103564359_103564508_103566622_103566768_103567621_103567664_103567746_103567822_103569209_103569280_103570230_103570318_103571225_103571320_103573159_103573231_103576791_103576940_103579066
ENSMUSG00000021213.13_0	chr13	+	1222	9	FSM	ENSMUSG00000021213.13	ENSMUST00000021634.4	1262	9	39	1	5	-1	multi-exon	FALSE	canonical	1	2	junction_3	2.98956518577535	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAATATTTTCTTTGTT	7396	False	NA	NA	False	AATAAA	-16	NA	4241187	4255594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_4241310_4244032_4244201_4244675_4244793_4246431_4246510_4246987_4247111_4247799_4247910_4248476_4248643_4253365_4253449_4255339
ENSMUSG00000021213.13_1	chr13	+	1361	10	NIC	ENSMUSG00000021213.13	novel	1262	9	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.02254900194121	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATATTTTCTTTGTTT	7399	False	NA	NA	False	AATAAA	-17	NA	4241190	4255595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_4241310_4242293_4242435_4244032_4244201_4244675_4244793_4246431_4246510_4246987_4247111_4247799_4247910_4248476_4248643_4253365_4253449_4255339
ENSMUSG00000021214.15_0	chr13	-	1194	9	FSM	ENSMUSG00000021214.15	ENSMUST00000021635.9	1200	9	8	-2	8	2	multi-exon	FALSE	canonical	1	1	junction_1	2.27760839478607	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACTCTTGTGTATGATT	NA	False	NA	NA	False	AATAAA	-24	NA	4200645	4182618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_4182836_4185201_4185285_4186600_4186767_4187132_4187243_4192125_4192249_4193216_4193295_4194288_4194406_4195204_4195373_4200513
ENSMUSG00000021215.16_0	chr13	-	3417	12	FSM	ENSMUSG00000021215.16	ENSMUST00000091853.12	2680	12	26	-763	-16	120	multi-exon	FALSE	canonical	3	132	junction_9	26.5501241222916	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCAAAACATTTCTCTCC	NA	False	NA	-10	True	ATTAAA	-20	NA	3968194	3932569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3957796_3957857_3962867_3962935_3967937
ENSMUSG00000021215.16_1	chr13	-	3283	10	FSM	ENSMUSG00000021215.16	ENSMUST00000099946.6	3871	10	36	552	1	120	multi-exon	FALSE	canonical	3	47	junction_9	50.6888353061239	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCAAAACATTTCTCTCC	NA	False	NA	-10	True	ATTAAA	-20	NA	3943542	3932569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3943292
ENSMUSG00000021215.16_3	chr13	-	1181	1	ISM	ENSMUSG00000021215.16	ENSMUST00000099946.6	3871	10	9828	552	3801	120	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCAAAACATTTCTCTCC	NA	False	NA	-10	True	ATTAAA	-20	NA	3933750	3932569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_3932600_3933800
ENSMUSG00000021217.8_0	chr7	+	2835	1	ISM	ENSMUSG00000021217.8	ENSMUST00000021641.8	5098	2	72516	85	72417	-85	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTTGTGTTGCGTTCAC	NA	False	NA	NA	False	ATTAAA	-16	NA	36470058	36472893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_36470100_36472900
ENSMUSG00000021218.11_0	chr13	+	2181	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	66	2056	-1	-5	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	2461	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCACTCTTGGTATTGAG	NA	False	NA	30	True	AATAAA	-13	NA	3588128	3615815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
ENSMUSG00000021222.10_0	chr12	+	1907	14	FSM	ENSMUSG00000021222.10	ENSMUST00000021645.9	2008	14	109	-8	-59	3	multi-exon	TRUE	canonical	3	216	junction_9	23.528907060372	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTGCCAAAGTATATTA	NA	False	NA	18	True	NA	NA	NA	83567348	83588697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
ENSMUSG00000021222.10_14	chr12	+	1918	13	FSM	ENSMUSG00000021222.10	ENSMUST00000223291.2	2005	13	149	-62	75	62	multi-exon	FALSE	canonical	3	216	junction_8	22.5331545850898	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCATCATAAAAGGTATGTA	NA	False	NA	7	True	AATAAA	-20	NA	83572922	83588756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
ENSMUSG00000021222.10_3	chr12	+	1954	14	NNC	ENSMUSG00000021222.10	novel	2008	14	NA	NA	-59	53	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_9	62.8602281575852	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAAGGCCTCATCATAAA	NA	False	NA	-2	True	AATAAA	-11	NA	83567348	83588747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584489_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
ENSMUSG00000021224.16_10	chr12	-	3503	12	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	30.7224310332864	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCCATGAAGGGCTGT	NA	False	NA	-35	True	AATAAA	-16	NA	83968664	83840842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
ENSMUSG00000021224.16_11	chr12	-	3503	11	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	-6	9	combination_of_known_junctions	FALSE	canonical	3	81	junction_8	18.2595180659293	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAAGGGCTGTTCTTATT	NA	False	NA	-28	True	AATAAA	-23	NA	83923590	83840835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441
ENSMUSG00000021224.16_2	chr12	-	3644	13	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	61	junction_10	24.4108354811729	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTTGCCCATGAAGGGC	NA	False	NA	-38	True	AATAAA	-13	NA	83968661	83840845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
ENSMUSG00000021224.16_20	chr12	-	3455	11	FSM	ENSMUSG00000021224.16	ENSMUST00000117217.8	3549	11	57	37	6	0	multi-exon	FALSE	canonical	3	42	junction_6	36.1696004954437	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGCCCATGAAGGGCT	NA	False	NA	-37	True	AATAAA	-14	NA	83968651	83840844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
ENSMUSG00000021224.16_3	chr12	-	3571	12	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	1	9	combination_of_known_junctions	FALSE	canonical	3	81	junction_8	18.4936888944748	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAAGGGCTGTTCTTATT	NA	False	NA	-28	True	AATAAA	-23	NA	83968663	83840835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441_83923587_83968591
ENSMUSG00000021224.16_4	chr12	-	3408	10	NIC	ENSMUSG00000021224.16	novel	3549	11	NA	NA	1	-9	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	34.4383507154451	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCAAATGGGTTTATAG	NA	False	NA	-11	True	AATAAA	-40	NA	83968663	83840818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83923441_83923587_83968591
ENSMUSG00000021224.16_6	chr12	-	3527	11	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	-2	2	combination_of_known_junctions	FALSE	canonical	3	42	junction_7	26.5375206076227	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCCATGAAGGGCTGT	NA	False	NA	-35	True	AATAAA	-16	NA	83968659	83840842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83923441_83923587_83968591
ENSMUSG00000021224.16_7	chr12	-	3421	11	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	1	6	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	27.6550176279098	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGAAGGGCTGTTCTT	NA	False	NA	-31	True	AATAAA	-20	NA	83968663	83840838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441_83923587_83968591
ENSMUSG00000021224.16_8	chr12	-	1546	1	ISM	ENSMUSG00000021224.16	ENSMUST00000117217.8	3549	11	126329	26	46738	11	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGGGCTGTTCTTATTTG	NA	False	NA	-26	True	AATAAA	-25	NA	83842379	83840833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_83840800_83842400
ENSMUSG00000021224.16_9	chr12	-	3617	12	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	42	junction_7	30.4074262351803	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCCATGAAGGGCTGT	NA	False	NA	-35	True	AATAAA	-16	NA	83968664	83840842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
ENSMUSG00000021226.8_0	chr12	+	2315	3	FSM	ENSMUSG00000021226.8	ENSMUST00000021649.8	2196	3	-123	4	-123	-4	multi-exon	FALSE	canonical	3	74	junction_2	1.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAAACTATGTTGTCCT	NA	False	NA	NA	False	AATAAA	-15	NA	84034511	84040643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84035256_84037267_84037471_84039275
ENSMUSG00000021226.8_1	chr12	+	1530	2	ISM	ENSMUSG00000021226.8	ENSMUST00000021649.8	2196	3	2678	0	2678	0	3prime_fragment	FALSE	canonical	3	74	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTATGTTGTCCTTCCT	NA	False	NA	NA	False	AATAAA	-19	NA	84037312	84040647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_84037471_84039275
ENSMUSG00000021226.8_2	chr12	+	463	1	ISM	ENSMUSG00000021226.8	ENSMUST00000021649.8	2196	3	5541	9	5541	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATAGACAAAACTATGTT	1764	False	NA	NA	False	AATAAA	-10	NA	84040175	84040638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_84040200_84040600
ENSMUSG00000021228.16_0	chr12	+	2438	3	ISM	ENSMUSG00000021228.16	ENSMUST00000021653.8	3431	4	1528	10	583	-10	3prime_fragment	FALSE	canonical	2	7	junction_1	2	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTAACATGTCTTGTTT	NA	False	NA	NA	False	AATAAA	-10	NA	84100452	84107166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_84100716_84103682_84103886_84105194
ENSMUSG00000021228.16_1	chr12	+	3888	2	ISM	ENSMUSG00000021228.16	ENSMUST00000021653.8	3431	4	1385	12	440	-12	intron_retention	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATGGTTAACATGTCTTGT	NA	False	NA	NA	False	AATAAA	-8	NA	84100309	84107164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_84100716_84103682
ENSMUSG00000021234.10_1	chr12	-	2216	8	FSM	ENSMUSG00000021234.10	ENSMUST00000021659.2	3357	8	0	1141	0	34	multi-exon	FALSE	canonical	1	2	junction_6	4.96929346597888	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTAAACCTCACAGATCC	417	False	NA	NA	False	AATATA	-25	NA	84408595	84393231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_84393710_84395050_84395151_84395379_84395545_84400573_84400702_84401483_84401822_84402697_84403252_84404301_84404625_84408465
ENSMUSG00000021234.10_2	chr12	-	2238	7	ISM	ENSMUSG00000021234.10	ENSMUST00000065536.9	3000	9	5645	8	-1333	0	3prime_fragment	FALSE	canonical	2	6	junction_1	3.1446603773522	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTGATGTTTGAGATAT	6050	False	NA	NA	False	AATAAA	-21	NA	84402962	84392090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84393184_84393560_84393710_84395050_84395151_84395379_84395545_84400573_84400702_84401483_84401822_84402697
ENSMUSG00000021234.10_4	chr12	-	2664	8	ISM	ENSMUSG00000021234.10	ENSMUST00000065536.9	3000	9	4166	11	-2812	-3	3prime_fragment	FALSE	canonical	1	2	junction_7	4.4629998148038	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATAGGTGATGTTTGAGA	4571	False	NA	NA	False	AATAAA	-18	NA	84404441	84392093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84393184_84393560_84393710_84395050_84395151_84395379_84395545_84400573_84400702_84401483_84401822_84402697_84403252_84404301
ENSMUSG00000021234.10_5	chr12	-	1448	6	ISM	ENSMUSG00000021234.10	ENSMUST00000133230.8	3203	7	5632	-36	-1305	36	3prime_fragment	FALSE	canonical	3	9	junction_5	2.03960780543711	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAACCTCACAGATCCTT	6078	False	NA	NA	False	AATATA	-27	NA	84402934	84393229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84393710_84395050_84395151_84395379_84395545_84400573_84400702_84401483_84401822_84402697
ENSMUSG00000021234.10_8	chr12	-	2988	9	FSM	ENSMUSG00000021234.10	ENSMUST00000065536.9	3000	9	0	12	0	-4	multi-exon	FALSE	canonical	1	2	junction_7	4.82020487116471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATAGGTGATGTTTGAG	405	False	NA	NA	False	AATAAA	-17	NA	84408607	84392094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_84393184_84393560_84393710_84395050_84395151_84395379_84395545_84400573_84400702_84401483_84401822_84402697_84403252_84404301_84404625_84408465
ENSMUSG00000021235.14_0	chr12	+	1523	12	FSM	ENSMUSG00000021235.14	ENSMUST00000021661.13	1602	12	71	8	0	0	multi-exon	FALSE	canonical	3	205	junction_6	16.3656564409681	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGTGTCTCTTTTCC	NA	False	NA	9	True	AATAAA	-9	NA	84408812	84420562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
ENSMUSG00000021236.17_0	chr12	-	4906	15	FSM	ENSMUSG00000021236.17	ENSMUST00000021662.12	4931	15	0	25	0	-4	multi-exon	TRUE	canonical	3	43	junction_8	4.52656557650139	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAAATAGTTTTCCTTTG	NA	False	NA	NA	False	AATAAA	-12	NA	84452250	84420655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84446113_84446187_84452179
ENSMUSG00000021236.17_1	chr12	-	4945	16	FSM	ENSMUSG00000021236.17	ENSMUST00000110272.9	4972	16	19	8	4	-5	multi-exon	FALSE	canonical	3	43	junction_8	4.47014789713072	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTAAATAGTTTTCCTTT	NA	False	NA	NA	False	AATAAA	-11	NA	84455784	84420656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84446113_84446187_84452179_84452250_84455743
ENSMUSG00000021236.17_3	chr12	-	4313	15	FSM	ENSMUSG00000021236.17	ENSMUST00000120942.8	4881	15	-1	569	-1	-569	multi-exon	FALSE	canonical	2	7	junction_13	11.8983792413685	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTGTAGTGTTGTTAT	NA	False	NA	NA	False	AATAAA	-14	NA	84455789	84421220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84452179_84452250_84455743
ENSMUSG00000021236.17_4	chr12	-	1580	1	ISM	ENSMUSG00000021236.17	ENSMUST00000021662.12	4931	15	30019	21	9953	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATAGTTTTCCTTTGGGTT	NA	False	NA	NA	False	AATAAA	-16	NA	84422231	84420651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84420700_84422200
ENSMUSG00000021238.12_0	chr12	-	3379	12	FSM	ENSMUSG00000021238.12	ENSMUST00000085192.7	3399	12	4	16	4	-16	multi-exon	FALSE	canonical	2	131	junction_11	16.2917613413438	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAGTACTGAAAAAAGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	84497773	84477506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
ENSMUSG00000021238.12_3	chr12	-	3527	12	NIC	ENSMUSG00000021238.12	novel	3399	12	NA	NA	1	-13	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	51.5315838319705	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTACTGAAAAAAGTGGTCT	NA	False	NA	NA	False	AATAAA	-20	NA	84497776	84477503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486632_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
ENSMUSG00000021238.12_4	chr12	-	871	1	ISM	ENSMUSG00000021238.12	ENSMUST00000222641.2	3471	12	16709	21	16709	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATACAGTACTGAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	84478382	84477511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84477500_84478400
ENSMUSG00000021240.7_0	chr12	-	2439	19	FSM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	-10	-120	-10	0	multi-exon	FALSE	canonical	3	128	junction_18	37.2765772285566	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84664154	84649306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
ENSMUSG00000021240.7_1	chr12	-	2205	16	ISM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	3216	-121	1233	1	3prime_fragment	FALSE	canonical	3	177	junction_14	24.1887025971492	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATAGACTGATTTTTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	84660928	84649305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678
ENSMUSG00000021240.7_3	chr12	-	2195	17	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-12	1	combination_of_known_splicesites	FALSE	canonical	3	30	junction_16	51.6547659345195	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATAGACTGATTTTTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	84664156	84649305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84664056
ENSMUSG00000021240.7_37	chr12	-	2198	16	NIC	ENSMUSG00000021240.7	novel	2581	19	NA	NA	1234	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_14	54.7530212256213	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84660927	84649306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659220_84659553_84659671_84660678
ENSMUSG00000021240.7_6	chr12	-	2302	18	ISM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	1965	-120	-18	0	3prime_fragment	FALSE	canonical	3	141	junction_17	32.9190051437461	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84662179	84649306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099
ENSMUSG00000021241.8_0	chr12	+	849	4	FSM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	30	4	3	-4	multi-exon	FALSE	canonical	0	0	junction_3	133.217449641137	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAAGTTCTTATCGTGT	NA	False	NA	8	True	TATAAA	-11	NA	84820054	84821855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84820146_84820348_84820452_84820566_84820683_84821316
ENSMUSG00000021241.8_1	chr12	+	824	4	FSM	ENSMUSG00000021241.8	ENSMUST00000222982.2	727	4	-22	-75	5	-6	multi-exon	FALSE	canonical	0	0	junction_3	90.0900783783776	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTAAGTTCTTATCGT	NA	False	NA	6	True	TATAAA	-9	NA	84820056	84821853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84820146_84820369_84820452_84820566_84820683_84821316
ENSMUSG00000021241.8_10	chr12	+	1415	3	ISM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	32	70	5	11	intron_retention	FALSE	canonical	3	219	junction_2	50	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAACCTCTCTAGCCTTCA	NA	False	NA	-58	True	NA	NA	NA	84820056	84821789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_84820146_84820348_84820452_84820566
ENSMUSG00000021241.8_2	chr12	+	1595	2	FSM	ENSMUSG00000021241.8	ENSMUST00000223089.2	843	2	-7	-745	6	-4	multi-exon	FALSE	canonical	3	319	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAAGTTCTTATCGTGT	NA	False	NA	8	True	TATAAA	-11	NA	84820057	84821855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84820146_84820348
ENSMUSG00000021241.8_5	chr12	+	1799	1	FSM	ENSMUSG00000021241.8	ENSMUST00000222136.2	416	1	10	-1393	-3	1	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCTTATCGTGTTTTCA	NA	False	NA	13	True	TATAAA	-16	NA	84820061	84821860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84820100_84821900
ENSMUSG00000021241.8_6	chr12	+	736	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222022.2	485	3	-47	-204	0	-4	multi-exon	FALSE	canonical	3	134	junction_2	92.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAAGTTCTTATCGTGT	NA	False	NA	8	True	TATAAA	-11	NA	84820051	84821855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84820146_84820348_84820452_84821316
ENSMUSG00000021241.8_9	chr12	+	1575	2	FSM	ENSMUSG00000021241.8	ENSMUST00000222166.2	1588	2	6	7	5	-4	multi-exon	FALSE	canonical	3	86	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAAGTTCTTATCGTGT	NA	False	NA	8	True	TATAAA	-11	NA	84820056	84821855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84820146_84820369
ENSMUSG00000021242.10_0	chr12	-	1121	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	248	1930	10	0	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	1519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGCTTGGTTTTGTTTTT	NA	False	NA	-27	True	ATTAAA	-17	NA	84819678	84803265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
ENSMUSG00000021242.10_3	chr12	-	356	1	ISM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	16305	1930	5693	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGCTTGGTTTTGTTTTT	NA	False	NA	-27	True	ATTAAA	-17	NA	84803621	84803265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84803300_84803600
ENSMUSG00000021243.15_0	chr12	+	704	8	FSM	ENSMUSG00000021243.15	ENSMUST00000021669.15	749	8	38	7	38	-1	multi-exon	FALSE	canonical	3	1900	junction_1	151.77601649692	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGCTATGTTGTCTCA	4667	False	NA	16	True	ATTAAA	-18	NA	85017708	85030070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
ENSMUSG00000021243.15_20	chr12	+	674	7	ISM	ENSMUSG00000021243.15	ENSMUST00000171040.2	731	8	233	-5	233	-1	3prime_fragment	FALSE	canonical	3	1987	junction_6	120.703148260516	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGCTATGTTGTCTCA	4946	False	NA	16	True	ATTAAA	-18	NA	85017987	85030070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
ENSMUSG00000021244.16_0	chr12	+	6987	21	FSM	ENSMUSG00000021244.16	ENSMUST00000021670.15	7003	21	-9	25	-9	-2	multi-exon	FALSE	canonical	3	62	junction_4	25.0129466476863	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGATTCATAGGCTGTA	NA	False	NA	7	True	AATAAA	-17	NA	85043116	85117264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85044131_85059662_85059900_85060677_85060897_85061423_85062368_85075543_85077662_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995_85104077_85107036_85107089_85111744_85111876_85116392_85116574_85116878
ENSMUSG00000021244.16_12	chr12	+	5086	16	ISM	ENSMUSG00000021244.16	ENSMUST00000168977.8	4893	20	1	12244	1	-1088	5prime_fragment	FALSE	canonical	3	22	junction_4	32.2065555783636	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGGTAATGATAATTGAG	NA	False	NA	NA	False	ATTAAA	-11	NA	85043095	85105022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_85044131_85059662_85059900_85060677_85060897_85061423_85062368_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995
ENSMUSG00000021244.16_2	chr12	+	4872	20	FSM	ENSMUSG00000021244.16	ENSMUST00000168977.8	4893	20	19	2	-12	-2	multi-exon	FALSE	canonical	3	22	junction_4	30.3797753105983	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGATTCATAGGCTGTA	NA	False	NA	7	True	AATAAA	-17	NA	85043113	85117264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85044131_85059662_85059900_85060677_85060897_85061423_85062368_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995_85104077_85107036_85107089_85111744_85111876_85116392_85116574_85116878
ENSMUSG00000021244.16_25	chr12	+	3273	17	ISM	ENSMUSG00000021244.16	ENSMUST00000021670.15	7003	21	33722	21	-12153	2	3prime_fragment	FALSE	canonical	3	85	junction_1	16.8094792825358	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCATAGGCTGTACAGT	NA	False	NA	11	True	AATAAA	-21	NA	85076847	85117268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_85077662_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995_85104077_85107036_85107089_85111744_85111876_85116392_85116574_85116878
ENSMUSG00000021244.16_40	chr12	+	3492	3	FSM	ENSMUSG00000021244.16	ENSMUST00000166605.2	915	3	-2502	-75	2217	-2	multi-exon	FALSE	canonical	3	136	junction_1	10.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGATTCATAGGCTGTA	NA	False	NA	7	True	AATAAA	-17	NA	85108950	85117264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85111876_85116392_85116574_85116878
ENSMUSG00000021244.16_6	chr12	+	6957	20	NIC	ENSMUSG00000021244.16	novel	7003	21	NA	NA	-12	-5	intron_retention	FALSE	canonical	3	7	junction_17	35.9467134100762	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTATGGGCCCTTTTCTC	NA	False	NA	26	True	AATAAA	-36	NA	85043113	85117283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_85044131_85059662_85059900_85060677_85060897_85061423_85062368_85075543_85077662_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995_85104077_85111744_85111876_85116392_85116574_85116878
ENSMUSG00000021244.16_7	chr12	+	7184	17	ISM	ENSMUSG00000021244.16	ENSMUST00000021670.15	7003	21	-9	12266	-9	-1087	5prime_fragment	FALSE	canonical	3	62	junction_4	25.712275157014	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGTAATGATAATTGAGT	NA	False	NA	NA	False	ATTAAA	-12	NA	85043116	85105023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_85044131_85059662_85059900_85060677_85060897_85061423_85062368_85075543_85077662_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995
ENSMUSG00000021245.16_0	chr12	-	5550	13	FSM	ENSMUSG00000021245.16	ENSMUST00000220854.2	4699	13	0	-851	0	0	multi-exon	FALSE	canonical	3	35	junction_11	18.8126730335342	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATAATGGGTTTGTTT	NA	False	NA	NA	False	AATAAA	-6	NA	85317373	85281302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85309540_85309637_85312925_85316249_85317312
ENSMUSG00000021245.16_1	chr12	-	4171	11	ISM	ENSMUSG00000021245.16	ENSMUST00000166821.8	5420	12	2339	0	-1968	0	3prime_fragment	FALSE	canonical	3	46	junction_10	14.1562706953491	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATAATGGGTTTGTTT	NA	False	NA	NA	False	AATAAA	-6	NA	85315026	85281302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85312925
ENSMUSG00000021245.16_5	chr12	-	5580	13	Fusion	ENSMUSG00000021245.16_ENSMUSG00000008822.16	novel	5420	12	NA	NA	14	0	multi-exon	FALSE	canonical	3	14	junction_11	88.6954840388669	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATAATGGGTTTGTTT	4322	False	NA	NA	False	AATAAA	-6	NA	85327178	85281302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85312925_85316249_85326764_85326857_85327083
ENSMUSG00000021245.16_6	chr12	-	5453	12	FSM	ENSMUSG00000021245.16	ENSMUST00000019378.8	5463	12	1	9	1	0	multi-exon	FALSE	canonical	3	46	junction_10	14.4554030620371	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATAATGGGTTTGTTT	NA	False	NA	NA	False	AATAAA	-6	NA	85317372	85281302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85312925_85316249_85317312
ENSMUSG00000021245.16_7	chr12	-	5684	14	Fusion	ENSMUSG00000021245.16_ENSMUSG00000008822.16	novel	4699	13	NA	NA	6	0	multi-exon	FALSE	canonical	3	14	junction_12	87.0928906262339	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATAATGGGTTTGTTT	4314	False	NA	NA	False	AATAAA	-6	NA	85327186	85281302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85309540_85309637_85312925_85316249_85326764_85326857_85327083
ENSMUSG00000021245.16_8	chr12	-	3641	12	ISM	ENSMUSG00000021245.16	ENSMUST00000220854.2	4699	13	2973	-851	-1342	0	3prime_fragment	FALSE	canonical	3	35	junction_11	19.2508452105957	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATAATGGGTTTGTTT	NA	False	NA	NA	False	AATAAA	-6	NA	85314400	85281302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85309540_85309637_85312925
ENSMUSG00000021248.10_0	chr12	-	1323	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	152	7	-5	-7	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	1072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGCTTGAAGTCCTTGTG	8616	False	NA	-12	True	ATTAAA	-13	NA	85421469	85389568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
ENSMUSG00000021248.10_1	chr12	-	1852	1	ISM	ENSMUSG00000021248.10	ENSMUST00000222529.2	3181	3	8449	6	8449	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATTTGAGGTGTATTT	8233	False	NA	-7	True	AATAAA	-10	NA	85389245	85387393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85387400_85389200
ENSMUSG00000021250.14_0	chr12	+	2108	4	FSM	ENSMUSG00000021250.14	ENSMUST00000021674.7	2108	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.85861230093008	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTTCTTGCTCTCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	85520663	85524047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85520955_85521708_85521961_85522365_85522474_85522590
ENSMUSG00000021252.12_4	chr12	-	1188	5	FSM	ENSMUSG00000021252.12	ENSMUST00000021676.12	1169	5	-21	2	1	-2	multi-exon	FALSE	canonical	3	716	junction_4	65.9104506129339	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCCGTCTGTGTACTTTG	NA	False	NA	-6	True	AATAAA	-19	NA	85871317	85862223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85871244
ENSMUSG00000021252.12_8	chr12	-	1184	5	NNC	ENSMUSG00000021252.12	novel	1169	5	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_4	319.557506561808	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCCGTCTGTGTACTTTGG	NA	False	NA	-5	True	AATAAA	-20	NA	85871316	85862222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869019_85871244
ENSMUSG00000021254.10_12	chr12	+	3902	10	FSM	ENSMUSG00000021254.10	ENSMUST00000221368.2	4355	10	36	417	19	-3	multi-exon	FALSE	canonical	3	40	junction_9	9.46077020329245	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTGTGTCTTGATATAT	NA	False	NA	NA	False	AATGAA	-20	NA	86288667	86338141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86328222_86328318_86335573
ENSMUSG00000021254.10_2	chr12	+	4741	12	Fusion	ENSMUSG00000097543.2_ENSMUSG00000021254.10	novel	3160	5	NA	NA	-2	-1	multi-exon	FALSE	canonical	1	2	junction_3	23.8070758285039	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGCTTATGATTGAGGT	NA	False	NA	2	True	AATAAA	-13	NA	86216112	86338557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_86216220_86216782_86217055_86218765_86218861_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86328222_86328318_86335573
ENSMUSG00000021254.10_23	chr12	+	2642	2	ISM	ENSMUSG00000021254.10	ENSMUST00000071106.6	3829	9	19	44745	19	-10664	5prime_fragment	FALSE	canonical	3	56	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	86288667	86293399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_86288719_86290808
ENSMUSG00000021254.10_31	chr12	+	2194	1	ISM	ENSMUSG00000021254.10	ENSMUST00000221368.2	4355	10	47731	2	27913	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTGCTTATGATTGAGG	NA	False	NA	1	True	AATAAA	-12	NA	86336362	86338556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_86336400_86338600
ENSMUSG00000021254.10_5	chr12	+	4066	11	Fusion	ENSMUSG00000097543.2_ENSMUSG00000021254.10	novel	3160	5	NA	NA	0	-165	multi-exon	FALSE	canonical	1	2	junction_3	24.8807154237976	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGATAATGTCAAAAATTAAG	NA	False	NA	NA	False	TTTAAA	-33	NA	86216114	86337979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_86216220_86216782_86217055_86218765_86218861_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86335573
ENSMUSG00000021254.10_9	chr12	+	4218	9	FSM	ENSMUSG00000021254.10	ENSMUST00000071106.6	3829	9	19	-408	19	-6	multi-exon	FALSE	canonical	3	43	junction_8	8.71421252896669	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCATGGTGCTTATGATT	NA	False	NA	-3	True	AATAAA	-8	NA	86288667	86338552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86335573
ENSMUSG00000021255.18_1	chr12	+	3875	6	FSM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	26	-2557	26	-3	multi-exon	FALSE	canonical	3	623	junction_2	30.0905300717684	1626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	13	True	AATAAA	-13	NA	86516916	86568396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
ENSMUSG00000021255.18_33	chr12	+	1909	1	ISM	ENSMUSG00000021255.18	ENSMUST00000116402.10	4300	7	158597	6	15305	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	502	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	13	True	AATAAA	-13	NA	86566487	86568396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_86566500_86568400
ENSMUSG00000021256.6_0	chr12	+	2710	1	NIC	ENSMUSG00000021256.6	novel	2599	7	NA	NA	13	-10669	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-43	NA	86725486	86728196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_86725500_86728200
ENSMUSG00000021257.15_0	chr12	-	3817	10	FSM	ENSMUSG00000021257.15	ENSMUST00000021682.9	3850	10	32	1	32	-1	multi-exon	FALSE	canonical	3	66	junction_1	10.9341463112378	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTGTTAGCCTTGTTATT	NA	False	NA	-1	True	AATAAA	-18	NA	86773202	86747276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_86749216_86749930_86750095_86752040_86752111_86763689_86763801_86764488_86764616_86767003_86767438_86768084_86768155_86768614_86768842_86769618_86770195_86773103
ENSMUSG00000021257.15_1	chr12	-	2914	5	FSM	ENSMUSG00000021257.15	ENSMUST00000163388.2	820	5	-158	-1936	-158	-1	multi-exon	FALSE	canonical	3	66	junction_1	8.69985632065266	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTGTTAGCCTTGTTATT	NA	False	NA	-1	True	AATAAA	-18	NA	86765118	86747276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_86749216_86749930_86750095_86752040_86752111_86763689_86763801_86764488
ENSMUSG00000021258.11_1	chr12	+	2556	12	FSM	ENSMUSG00000021258.11	ENSMUST00000221167.2	2789	12	232	1	73	-1	multi-exon	FALSE	canonical	3	54	junction_11	12.5217166726353	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGTTTATGTGTGAGTACA	NA	False	NA	23	True	AATAAA	-16	NA	108146069	108169615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_108146140_108148435_108148468_108152634_108152882_108153437_108153520_108155323_108155456_108159930_108160037_108160600_108160659_108161325_108161496_108161841_108162111_108162597_108162632_108165567_108165643_108168334
ENSMUSG00000021258.11_10	chr12	+	647	1	ISM	ENSMUSG00000021258.11	ENSMUST00000221167.2	2789	12	23126	6	3620	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACCGTTTATGTGTGA	NA	False	NA	18	True	AATAAA	-11	NA	108168963	108169610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_108169000_108169600
ENSMUSG00000021258.11_5	chr12	+	2517	11	NIC	ENSMUSG00000021258.11	novel	2789	12	NA	NA	75	-6	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	19.4483932498291	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACCGTTTATGTGTGA	NA	False	NA	18	True	AATAAA	-11	NA	108146071	108169610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_108146140_108152634_108152882_108153437_108153520_108155323_108155456_108159930_108160037_108160600_108160659_108161325_108161496_108161841_108162111_108162597_108162632_108165567_108165643_108168334
ENSMUSG00000021258.11_9	chr12	+	1601	4	ISM	ENSMUSG00000021258.11	ENSMUST00000101055.5	2627	11	15898	8	-3449	-6	3prime_fragment	FALSE	canonical	3	54	junction_3	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACCGTTTATGTGTGA	NA	False	NA	18	True	AATAAA	-11	NA	108161894	108169610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_108162111_108162597_108162632_108165567_108165643_108168334
ENSMUSG00000021259.6_0	chr12	+	2130	15	FSM	ENSMUSG00000021259.6	ENSMUST00000021684.6	2118	15	-13	1	-13	-1	multi-exon	FALSE	canonical	1	1	junction_1	1.28769688409428	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATGTACGGCCACCCAG	NA	False	NA	NA	False	NA	NA	NA	108300626	108328492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_108300824_108308581_108308663_108309272_108309355_108311832_108311907_108312347_108312435_108317440_108317580_108318172_108318284_108319032_108319184_108319348_108319412_108321682_108321756_108323745_108323831_108324289_108324401_108326739_108326829_108327454_108327522_108327772
ENSMUSG00000021260.9_2	chr12	+	5188	9	FSM	ENSMUSG00000021260.9	ENSMUST00000021685.8	5174	9	-17	3	-17	-3	multi-exon	FALSE	canonical	0	0	junction_2	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTGCTTTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	108272511	108297125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_108272943_108277946_108278594_108282709_108282854_108284712_108285042_108285584_108285712_108286214_108286361_108288061_108288144_108293384_108293468_108293926
ENSMUSG00000021262.16_0	chr12	+	1939	14	FSM	ENSMUSG00000021262.16	ENSMUST00000021689.14	2180	14	238	3	238	0	multi-exon	FALSE	canonical	3	149	junction_6	17.7207129833721	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCAGGCTCTGGCTCAC	NA	False	NA	14	True	AATAAA	-14	NA	108521220	108654772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_108521473_108614573_108614743_108619180_108619359_108639547_108639612_108640665_108640725_108641655_108641886_108642360_108642483_108646087_108646149_108647749_108647814_108649453_108649521_108649606_108649670_108652308_108652376_108652666_108652725_108654287
ENSMUSG00000021262.16_1	chr12	+	2039	15	NNC	ENSMUSG00000021262.16	novel	2180	14	NA	NA	239	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	61.4242938710004	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCAGGCTCTGGCTCAC	NA	False	NA	14	True	AATAAA	-14	NA	108521221	108654772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_108521473_108572169_108572271_108614573_108614743_108619180_108619359_108639547_108639612_108640665_108640725_108641655_108641886_108642360_108642483_108646087_108646149_108647749_108647814_108649453_108649521_108649606_108649670_108652308_108652376_108652666_108652725_108654287
ENSMUSG00000021262.16_3	chr12	+	1878	13	FSM	ENSMUSG00000021262.16	ENSMUST00000077735.13	2121	13	240	3	236	0	multi-exon	FALSE	canonical	3	17	junction_10	48.559814204294	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCAGGCTCTGGCTCAC	NA	False	NA	14	True	AATAAA	-14	NA	108521218	108654772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_108521473_108614573_108614743_108619180_108619359_108639547_108639612_108640665_108640725_108641655_108641886_108642360_108642483_108646087_108646149_108647749_108647814_108649453_108649521_108652308_108652376_108652666_108652725_108654287
ENSMUSG00000021263.12_0	chr12	-	1266	3	FSM	ENSMUSG00000021263.12	ENSMUST00000021691.6	1287	3	21	0	3	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTTTTCCTTCTTTTG	NA	False	NA	NA	False	ATTAAA	-21	NA	108668549	108656480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_108656870_108658152_108658896_108668415
ENSMUSG00000021264.13_11	chr12	+	1406	4	FSM	ENSMUSG00000021264.13	ENSMUST00000126912.2	715	4	252	-943	252	943	multi-exon	FALSE	canonical	3	69	junction_1	9.93310961716756	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAGATTACGGCAGAA	6448	False	NA	4	True	AATAAA	-12	NA	108772416	108782433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_108772568_108778844_108778906_108780531_108780691_108781398
ENSMUSG00000021264.13_12	chr12	+	1213	2	ISM	ENSMUSG00000021264.13	ENSMUST00000126912.2	715	4	8367	-962	8367	962	3prime_fragment	FALSE	canonical	3	91	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCTCTGTAAGCACAGC	NA	False	NA	23	True	AATAAA	-31	NA	108780531	108782452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_108780691_108781398
ENSMUSG00000021264.13_14	chr12	+	3982	1	ISM	ENSMUSG00000021264.13	ENSMUST00000021692.9	6178	5	23183	11	9917	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTTTAATGCCTGTGT	NA	False	NA	14	True	AATAAA	-14	NA	108782081	108786063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_108782100_108786100
ENSMUSG00000021264.13_15	chr12	+	2616	1	ISM	ENSMUSG00000021264.13	ENSMUST00000021692.9	6178	5	24553	7	11287	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTAATGCCTGTGTTCTT	NA	False	NA	18	True	AATAAA	-18	NA	108783451	108786067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_108783500_108786100
ENSMUSG00000021264.13_3	chr12	+	2160	5	FSM	ENSMUSG00000021264.13	ENSMUST00000021692.9	6178	5	497	3521	497	1063	multi-exon	FALSE	canonical	3	62	junction_1	10.779030568655	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTTGCACTCAGTGA	NA	False	NA	10	True	AATAAA	-15	NA	108759395	108782553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_108760018_108772404_108772568_108778844_108778906_108780531_108780691_108781398
ENSMUSG00000021265.4_0	chr12	-	1963	4	FSM	ENSMUSG00000021265.4	ENSMUST00000021693.4	1976	4	8	5	8	-5	multi-exon	FALSE	canonical	3	8	junction_1	5.09901951359278	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTGTGAAGCTCCTCTG	NA	False	NA	NA	False	AATAAA	-13	NA	108801801	108791803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_108793415_108793599_108793684_108797122_108797167_108801577
ENSMUSG00000021266.17_0	chr12	-	2789	10	FSM	ENSMUSG00000021266.17	ENSMUST00000109848.10	2831	10	38	4	1	0	multi-exon	FALSE	canonical	3	1835	junction_9	109.614475929657	2939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	-35	True	AATAAA	-15	NA	108860062	108825959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
ENSMUSG00000021266.17_2	chr12	-	1854	11	NIC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	246	junction_1	519.514003661114	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	-35	True	AATAAA	-15	NA	108860062	108825959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
ENSMUSG00000021268.18_0	chr12	+	1810	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	3	241	junction_3	82.0182906430023	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGTGATGGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	109506881	109538157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_1	chr12	+	1544	3	ISM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	-6	26953	-2	0	intron_retention	FALSE	canonical	3	281	junction_2	112.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109506881	109511202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_109506983_109509582_109509733_109509909
ENSMUSG00000021268.18_11	chr12	+	1860	10	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	3	71	junction_3	145.012983667321	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGTGATGGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	109506881	109538157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109510830_109510925_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_2	chr12	+	1685	8	NIC	ENSMUSG00000021268.18	novel	1988	9	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	137.349249457471	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGTGATGGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	109506881	109538157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_3	chr12	+	1729	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	128.442792792777	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGTGATGGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	109506881	109538157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_4	chr12	+	1766	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	3	187	junction_2	97.0602261485105	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGTGATGGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	109506881	109538157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_44	chr12	+	875	1	FSM	ENSMUSG00000084535.3	ENSMUST00000122586.3	80	1	-96	-699	-96	699	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109510327	109511202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_109510300_109511200
ENSMUSG00000021268.18_45	chr12	+	1349	7	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-261	1	combination_of_known_junctions	FALSE	canonical	3	241	junction_1	63.832463005381	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGTGATGGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	109510119	109538157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_5	chr12	+	1904	10	FSM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	-6	-2	-2	1	multi-exon	FALSE	canonical	3	71	junction_3	140.228473183437	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGTGATGGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	109506881	109538157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_109506983_109509582_109509733_109509909_109510626_109510830_109510925_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_53	chr12	+	1605	6	ISM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	4663	-2	270	1	3prime_fragment	FALSE	canonical	3	289	junction_1	49.6531972787252	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGTGATGGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	109511550	109538157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_58	chr12	+	1541	5	ISM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	8027	-2	-677	1	3prime_fragment	FALSE	canonical	3	333	junction_1	37.877268908938	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGTGATGGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	109514914	109538157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_6	chr12	+	1500	3	FSM	ENSMUSG00000021268.18	ENSMUST00000129245.8	1498	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	187	junction_2	159.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109506881	109511202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_109506983_109509582_109509689_109509909
ENSMUSG00000021270.14_4	chr12	-	2760	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	88	433	-18	-10	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	20922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAGAAGTGTGGAATG	NA	False	NA	-15	True	GATAAA	-11	NA	110662741	110657471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ENSMUSG00000021270.14_5	chr12	-	2690	10	ISM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	623	10	6	-10	3prime_fragment	FALSE	canonical	3	11114	junction_7	1571.89128829643	687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAGAAGTGTGGAATG	NA	False	NA	-15	True	GATAAA	-11	NA	110662100	110657471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952
ENSMUSG00000021270.14_7	chr12	-	2407	9	ISM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	1006	10	389	-10	3prime_fragment	FALSE	canonical	3	11114	junction_7	1588.48413884905	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAGAAGTGTGGAATG	NA	False	NA	-15	True	GATAAA	-11	NA	110661717	110657471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485
ENSMUSG00000021270.14_8	chr12	-	1909	7	ISM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	2078	10	81	-10	3prime_fragment	FALSE	canonical	3	11833	junction_5	1595.63419123	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAGAAGTGTGGAATG	NA	False	NA	-15	True	GATAAA	-11	NA	110660645	110657471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456
ENSMUSG00000021271.6_15	chr12	+	3717	8	FSM	ENSMUSG00000021271.6	ENSMUST00000170060.4	3723	8	6	0	6	0	multi-exon	TRUE	canonical	3	8	junction_3	20.4500386706884	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGCTTTCTTGATGTGT	NA	False	NA	13	True	AGTAAA	-16	NA	110816718	110836430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110816998_110821433_110822307_110827229_110827458_110830397_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583
ENSMUSG00000021271.6_18	chr12	+	3418	8	NNC	ENSMUSG00000021271.6	novel	3723	8	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	20.5634905319389	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTCTTGCTTTCTTGA	NA	False	NA	8	True	AGTAAA	-11	NA	110816746	110836425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_110816998_110821433_110822307_110830397_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583_110835552_110835589
ENSMUSG00000021271.6_28	chr12	+	3329	6	NIC	ENSMUSG00000021271.6	novel	2385	7	NA	NA	5	-5	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	19.8232187093822	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTCTTGCTTTCTTGA	NA	False	NA	8	True	AGTAAA	-11	NA	110816744	110836425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_110816998_110821433_110822307_110830397_110830491_110831289_110831440_110833141_110833260_110834583
ENSMUSG00000021271.6_41	chr12	+	3182	6	ISM	ENSMUSG00000021271.6	ENSMUST00000222460.2	2385	7	4720	-1081	4720	-2	3prime_fragment	FALSE	canonical	3	41	junction_3	10.9288608738514	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTGCTTTCTTGATGT	NA	False	NA	11	True	AGTAAA	-14	NA	110821459	110836428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110822307_110830397_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583
ENSMUSG00000021271.6_6	chr12	+	3481	7	FSM	ENSMUSG00000021271.6	ENSMUST00000222460.2	2385	7	-18	-1078	9	-5	multi-exon	FALSE	canonical	3	41	junction_4	9.97914491994847	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTCTTGCTTTCTTGA	NA	False	NA	8	True	AGTAAA	-11	NA	110816721	110836425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110816998_110821433_110822307_110830397_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583
ENSMUSG00000021273.12_1	chr14	-	1653	8	FSM	ENSMUSG00000021273.12	ENSMUST00000054963.10	2860	8	-50	1257	-46	-1257	multi-exon	FALSE	canonical	3	727	junction_5	70.2819395037456	808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAACTGGTCCTTGTCT	4261	False	NA	-41	True	AATAGA	-6	NA	63415292	63383858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63400935_63401980_63402079_63415131
ENSMUSG00000021273.12_2	chr14	-	1820	7	FSM	ENSMUSG00000021273.12	ENSMUST00000238526.2	3048	7	-32	1260	-32	-1257	multi-exon	FALSE	canonical	3	727	junction_5	64.1242283904194	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAACTGGTCCTTGTCT	2850	False	NA	-41	True	AATAGA	-6	NA	63402406	63383858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63400935_63401980
ENSMUSG00000021275.17_1	chr12	+	7741	20	FSM	ENSMUSG00000021275.17	ENSMUST00000165978.3	7778	20	27	10	15	-8	multi-exon	FALSE	canonical	3	17	junction_1	4.72278616298412	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTCAATTCTCTTAAT	5410	False	NA	5	True	NA	NA	NA	110855724	110938818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110855761_110862520_110862809_110881083_110881213_110881780_110881913_110885302_110885461_110892597_110892911_110895465_110895599_110897833_110898167_110899050_110900067_110902709_110902894_110904624_110904799_110906190_110906372_110907886_110908029_110911078_110911320_110912755_110912846_110914135_110914370_110921107_110921257_110934169_110934312_110934725_110934876_110935302
ENSMUSG00000021275.17_10	chr12	+	6010	12	ISM	ENSMUSG00000021275.17	ENSMUST00000223210.2	6946	20	37353	-923	17775	-8	3prime_fragment	FALSE	canonical	3	18	junction_6	4.23093682844367	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTCAATTCTCTTAAT	1180	False	NA	5	True	NA	NA	NA	110899259	110938818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110900067_110902709_110902894_110904624_110904799_110906190_110906372_110907886_110908029_110911078_110911320_110912755_110912846_110914135_110914370_110921107_110921257_110934169_110934312_110934725_110934876_110935302
ENSMUSG00000021275.17_12	chr12	+	4898	10	ISM	ENSMUSG00000021275.17	ENSMUST00000223210.2	6946	20	42839	-923	23261	-8	3prime_fragment	FALSE	canonical	3	18	junction_4	4.59736908123938	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTCAATTCTCTTAAT	6666	False	NA	5	True	NA	NA	NA	110904745	110938818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110904799_110906190_110906372_110907886_110908029_110911078_110911320_110912755_110912846_110914135_110914370_110921107_110921257_110934169_110934312_110934725_110934876_110935302
ENSMUSG00000021275.17_13	chr12	+	4701	9	ISM	ENSMUSG00000021275.17	ENSMUST00000223210.2	6946	20	44436	-931	24858	0	3prime_fragment	FALSE	canonical	3	18	junction_3	4.84122918275927	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTCTTAATTTTGCAGT	8263	False	NA	13	True	NA	NA	NA	110906342	110938826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110906372_110907886_110908029_110911078_110911320_110912755_110912846_110914135_110914370_110921107_110921257_110934169_110934312_110934725_110934876_110935302
ENSMUSG00000021275.17_15	chr12	+	4387	7	ISM	ENSMUSG00000021275.17	ENSMUST00000223210.2	6946	20	49307	-923	29729	-8	3prime_fragment	FALSE	canonical	3	18	junction_1	4.81028989655394	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTCAATTCTCTTAAT	NA	False	NA	5	True	NA	NA	NA	110911213	110938818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110911320_110912755_110912846_110914135_110914370_110921107_110921257_110934169_110934312_110934725_110934876_110935302
ENSMUSG00000021275.17_16	chr12	+	4052	5	ISM	ENSMUSG00000021275.17	ENSMUST00000223210.2	6946	20	52368	-923	32790	-8	3prime_fragment	FALSE	canonical	3	23	junction_2	3.34477204006491	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTCAATTCTCTTAAT	NA	False	NA	5	True	NA	NA	NA	110914274	110938818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110914370_110921107_110921257_110934169_110934312_110934725_110934876_110935302
ENSMUSG00000021275.17_17	chr12	+	2940	1	ISM	ENSMUSG00000021275.17	ENSMUST00000165978.3	7778	20	80183	8	54396	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCAATTCTCTTAATTT	NA	False	NA	7	True	NA	NA	NA	110935880	110938820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110935900_110938800
ENSMUSG00000021275.17_28	chr12	+	3911	4	ISM	ENSMUSG00000021275.17	ENSMUST00000223210.2	6946	20	59249	-925	39671	-6	3prime_fragment	FALSE	canonical	3	23	junction_1	3.55902608401044	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCAATTCTCTTAATTT	NA	False	NA	7	True	NA	NA	NA	110921155	110938820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110921257_110934169_110934312_110934725_110934876_110935302
ENSMUSG00000021275.17_8	chr12	+	7707	19	ISM	ENSMUSG00000021275.17	ENSMUST00000169597.9	7780	21	6773	8	612	-8	3prime_fragment	FALSE	canonical	3	18	junction_2	4.34790995624959	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTCAATTCTCTTAAT	NA	False	NA	5	True	NA	NA	NA	110862518	110938818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_110862809_110881083_110881213_110881780_110881913_110885302_110885461_110892597_110892911_110895465_110895599_110897833_110898167_110899050_110900067_110902709_110902894_110904624_110904799_110906190_110906372_110907886_110908029_110911078_110911320_110912755_110912846_110914135_110914370_110921107_110921257_110934169_110934312_110934725_110934876_110935302
ENSMUSG00000021276.11_1	chr12	-	1439	5	FSM	ENSMUSG00000021276.11	ENSMUST00000043716.9	2029	5	31	559	2	-7	multi-exon	FALSE	canonical	3	237	junction_1	85.0951673128386	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATATATACATATTAAT	3380	False	NA	-17	True	NA	NA	NA	110855548	110839602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_110840564_110843274_110843405_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_17	chr12	-	720	5	FSM	ENSMUSG00000021276.11	ENSMUST00000222457.2	723	5	11	-8	-6	2	multi-exon	FALSE	canonical	3	69	junction_1	152.938508885107	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGGAGGTTAATCTGCTT	3389	False	NA	-11	True	AATAAA	-16	NA	110855539	110841459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_110841711_110843274_110843405_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_21	chr12	-	1858	4	NNC	ENSMUSG00000021276.11	novel	445	4	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	5	junction_1	206.236649399556	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTCCTAGTTATTTCTG	3377	False	NA	-4	True	AATAAA	-17	NA	110855551	110844029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_110844549_110845130_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_9	chr12	-	1300	4	FSM	ENSMUSG00000021276.11	ENSMUST00000221102.2	536	4	14	-778	-6	-7	multi-exon	FALSE	canonical	2	10	junction_1	203.882318997995	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATATATACATATTAAT	3389	False	NA	-17	True	NA	NA	NA	110855539	110839602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_110840564_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021277.17_0	chr12	+	7079	12	FSM	ENSMUSG00000021277.17	ENSMUST00000021706.11	7060	12	-73	54	20	-50	multi-exon	FALSE	canonical	3	25	junction_1	10.269911118416	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAATTTTGTAATGCTCAA	NA	False	NA	-45	True	AATAAA	-21	NA	111132823	111233528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111133037_111186244_111186356_111203995_111204255_111205462_111205515_111208876_111208982_111209804_111209973_111214999_111215081_111217563_111217639_111219097_111219191_111221656_111221798_111227070_111227246_111227922
ENSMUSG00000021277.17_15	chr12	+	4018	1	ISM	ENSMUSG00000021277.17	ENSMUST00000117269.8	6972	10	96757	9	14644	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTCCGGCTCTCTGGCT	NA	False	NA	5	True	AATAAA	-9	NA	111229560	111233578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_111229600_111233600
ENSMUSG00000021277.17_3	chr12	+	2649	13	NIC	ENSMUSG00000021277.17	novel	7060	12	NA	NA	24	-1	combination_of_known_junctions	FALSE	canonical	1	7	junction_2	15.2886577421157	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGGTCTCTGTTTTAA	NA	False	NA	17	True	AATATA	-24	NA	111132827	111228993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111133037_111133432_111133542_111186244_111186356_111203995_111204255_111205462_111205515_111208876_111208982_111209804_111209973_111214999_111215081_111217563_111217639_111219097_111219191_111221656_111221798_111227070_111227246_111227922
ENSMUSG00000021278.8_1	chr12	+	1524	12	FSM	ENSMUSG00000021278.8	ENSMUST00000021707.8	1701	12	3	174	3	0	multi-exon	FALSE	canonical	3	12	junction_1	7.23969772438711	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGATAGCCTGGTCCTA	NA	False	NA	28	True	AATAAA	-21	NA	111237531	111242686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111237599_111238130_111238250_111238331_111238377_111240576_111240665_111240792_111241011_111241144_111241283_111241387_111241497_111241590_111241674_111241778_111241927_111242005_111242184_111242266_111242361_111242449
ENSMUSG00000021278.8_2	chr12	+	1675	11	NIC	ENSMUSG00000021278.8	novel	1701	12	NA	NA	-16	4	intron_retention	FALSE	canonical	3	12	junction_1	7.59012516365837	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGCCTGGTCCTACTTG	NA	False	NA	32	True	AATAAA	-25	NA	111237512	111242690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111237599_111238130_111238250_111238331_111238377_111240576_111241011_111241144_111241283_111241387_111241497_111241590_111241674_111241778_111241927_111242005_111242184_111242266_111242361_111242449
ENSMUSG00000021278.8_4	chr12	+	1516	11	ISM	ENSMUSG00000021278.8	ENSMUST00000021707.8	1701	12	549	168	549	6	3prime_fragment	FALSE	canonical	3	18	junction_4	6.39061812346818	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCCTGGTCCTACTTGTA	NA	False	NA	34	True	AATAAA	-27	NA	111238077	111242692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_111238250_111238331_111238377_111240576_111240665_111240792_111241011_111241144_111241283_111241387_111241497_111241590_111241674_111241778_111241927_111242005_111242184_111242266_111242361_111242449
ENSMUSG00000021279.6_1	chr12	-	6617	37	FSM	ENSMUSG00000021279.6	ENSMUST00000041965.5	6714	37	91	6	-8	-6	multi-exon	FALSE	canonical	3	105	junction_28	14.8707393524629	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTCTCAGGGGTTTGTC	NA	False	NA	-9	True	AATAAA	-19	NA	111344061	111259415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_111260667_111261327_111261399_111261489_111261596_111262172_111262291_111262381_111262500_111262642_111262728_111262813_111262912_111265516_111266117_111268243_111268307_111268447_111268665_111270263_111270346_111271405_111271546_111272099_111272237_111272875_111272982_111274212_111274291_111274541_111274632_111277920_111278001_111279760_111279856_111280857_111281007_111283892_111283999_111284341_111284467_111284869_111284976_111285062_111285308_111286411_111286523_111287397_111287641_111287904_111288039_111289236_111289357_111289440_111289608_111291417_111291498_111292393_111292643_111293849_111294051_111295572_111295667_111302459_111302609_111306254_111306351_111308459_111308544_111311965_111312058_111343530
ENSMUSG00000021279.6_12	chr12	-	2058	7	ISM	ENSMUSG00000021279.6	ENSMUST00000041965.5	6714	37	81036	0	-407	0	3prime_fragment	FALSE	canonical	3	140	junction_2	9.12414379544733	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGGTTTGTCTGATAG	9915	False	NA	-3	True	AATAAA	-25	NA	111263116	111259409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_111260667_111261327_111261399_111261489_111261596_111262172_111262291_111262381_111262500_111262642_111262728_111262813
ENSMUSG00000021279.6_16	chr12	-	1024	1	ISM	ENSMUSG00000021279.6	ENSMUST00000221897.2	1589	3	1317	0	602	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGGTTTGTCTGATAG	NA	False	NA	-3	True	AATAAA	-25	NA	111260433	111259409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_111259400_111260400
ENSMUSG00000021279.6_43	chr12	-	2141	8	ISM	ENSMUSG00000021279.6	ENSMUST00000041965.5	6714	37	78342	6	3063	-6	3prime_fragment	FALSE	canonical	3	140	junction_2	8.53563956930837	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTCTCAGGGGTTTGTC	7221	False	NA	-9	True	AATAAA	-19	NA	111265810	111259415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_111260667_111261327_111261399_111261489_111261596_111262172_111262291_111262381_111262500_111262642_111262728_111262813_111262912_111265516
ENSMUSG00000021279.6_8	chr12	-	4509	25	ISM	ENSMUSG00000021279.6	ENSMUST00000041965.5	6714	37	56626	3	-6555	-3	3prime_fragment	TRUE	canonical	3	110	junction_19	14.2667421142865	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTCAGGGGTTTGTCTGA	NA	False	NA	-6	True	AATAAA	-22	NA	111287526	111259412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_111260667_111261327_111261399_111261489_111261596_111262172_111262291_111262381_111262500_111262642_111262728_111262813_111262912_111265516_111266117_111268243_111268307_111268447_111268665_111270263_111270346_111271405_111271546_111272099_111272237_111272875_111272982_111274212_111274291_111274541_111274632_111277920_111278001_111279760_111279856_111280857_111281007_111283892_111283999_111284341_111284467_111284869_111284976_111285062_111285308_111286411_111286523_111287397
ENSMUSG00000021282.18_0	chr12	+	3209	12	FSM	ENSMUSG00000021282.18	ENSMUST00000166123.9	4050	12	200	641	0	-477	multi-exon	FALSE	canonical	3	1736	junction_1	190.905151474506	3043	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAAATCATACAAATATT	NA	False	NA	NA	False	AATAAA	-19	NA	111504649	111512545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111504674_111504788_111504983_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
ENSMUSG00000021282.18_38	chr12	+	2797	11	ISM	ENSMUSG00000021282.18	ENSMUST00000166123.9	4050	12	329	1039	-8	714	3prime_fragment	FALSE	canonical	3	2160	junction_7	92.3556170462847	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTGAGTCAGAGCCTGT	NA	False	NA	NA	False	TTTAAA	-18	NA	111504778	111512147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_111504983_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
ENSMUSG00000021285.16_0	chr12	-	4383	17	FSM	ENSMUSG00000021285.16	ENSMUST00000054815.15	4389	17	4	2	4	-2	multi-exon	FALSE	canonical	3	36	junction_7	8.14108983797624	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGAGTCCTTTGAGTC	1117	False	NA	-2	True	AATAAA	-17	NA	111874540	111794892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_111795818_111796688_111796889_111797893_111798061_111798736_111798871_111798942_111799081_111799561_111800329_111801235_111801738_111802046_111802211_111805034_111805216_111807390_111807532_111809978_111810176_111811255_111811431_111812761_111812864_111824643_111824721_111832848_111832969_111838719_111838868_111874295
ENSMUSG00000021286.9_2	chr12	+	1316	8	FSM	ENSMUSG00000021286.9	ENSMUST00000223211.2	794	8	6	-528	1	-2	multi-exon	FALSE	canonical	3	188	junction_5	258.732309855699	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAGCAGGCTCTGGCCT	NA	False	NA	14	True	ATTAAA	-15	NA	111780647	111794818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792012_111792067_111793976_111794120_111794251
ENSMUSG00000021286.9_3	chr12	+	1268	7	FSM	ENSMUSG00000021286.9	ENSMUST00000021714.9	1308	7	39	1	1	-1	multi-exon	FALSE	canonical	3	470	junction_5	111.029525602677	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGCAGGCTCTGGCCTC	NA	False	NA	15	True	ATTAAA	-16	NA	111780642	111794819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793976_111794120_111794251
ENSMUSG00000021286.9_4	chr12	+	1321	8	FSM	ENSMUSG00000021286.9	ENSMUST00000221375.2	1265	8	-27	-29	0	-6	multi-exon	FALSE	canonical	3	56	junction_5	290.764860465691	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTACACAGCAGGCTCTG	NA	False	NA	10	True	ATTAAA	-11	NA	111780641	111794814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792009_111792067_111793976_111794120_111794251
ENSMUSG00000021287.13_0	chr12	-	2432	8	FSM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	-18	8	-7	-8	multi-exon	FALSE	canonical	3	57	junction_7	12.8809303758284	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGTATCAACACTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	111780293	111769634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494_111778654_111780258
ENSMUSG00000021287.13_3	chr12	-	2399	7	ISM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	1620	8	0	-8	3prime_fragment	FALSE	canonical	3	68	junction_3	10.4947076609541	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGTATCAACACTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	111778655	111769634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494
ENSMUSG00000021287.13_7	chr12	-	2420	8	NIC	ENSMUSG00000021287.13	novel	2422	8	NA	NA	6	-8	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	27.3488424558238	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGTATCAACACTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	111780301	111769634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776379_111777291_111777430_111778494_111778654_111780258
ENSMUSG00000021288.20_1	chr12	+	2386	16	FSM	ENSMUSG00000021288.20	ENSMUST00000122300.8	2268	16	-130	12	34	4	multi-exon	FALSE	canonical	2	29	junction_13	39.7419453754119	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGAATGAAAGCCTGTTC	NA	False	NA	NA	False	ATTAAA	-22	NA	111725316	111773149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755921_111761981_111762113_111772441_111772509_111772748
ENSMUSG00000021288.20_10	chr12	+	2398	15	NIC	ENSMUSG00000021288.20	novel	2272	14	NA	NA	31	1	combination_of_known_splicesites	FALSE	canonical	2	31	junction_13	41.916157811926	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTGTCTTGTGTCTGTC	NA	False	NA	10	True	AATAAA	-14	NA	111725313	111761330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111760082_111760134_111760770
ENSMUSG00000021288.20_16	chr12	+	2371	15	NIC	ENSMUSG00000021288.20	novel	2261	14	NA	NA	33	0	combination_of_known_splicesites	FALSE	canonical	2	31	junction_13	45.6198242800971	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTGTGTCTTGTGTCTGT	NA	False	NA	9	True	AATAAA	-13	NA	111725315	111761329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755894_111760082_111760134_111760770
ENSMUSG00000021288.20_18	chr12	+	2416	15	NIC	ENSMUSG00000021288.20	novel	2261	14	NA	NA	40	1	combination_of_known_junctions	FALSE	canonical	2	16	junction_13	44.3616859877245	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTGTCTTGTGTCTGTC	NA	False	NA	10	True	AATAAA	-14	NA	111725322	111761330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755921_111760082_111760134_111760770
ENSMUSG00000021288.20_3	chr12	+	2254	15	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	28	0	combination_of_known_junctions	FALSE	canonical	2	27	junction_13	36.2404808050278	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725310	111773145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111772441_111772509_111772748
ENSMUSG00000021288.20_48	chr12	+	3903	4	NIC	ENSMUSG00000021288.20	novel	806	3	NA	NA	1073	3	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	49.725915443224	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGAATGAAAGCCTGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	111756828	111773148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111760134_111761981_111762113_111772441_111772509_111772748
ENSMUSG00000021288.20_5	chr12	+	2356	16	NIC	ENSMUSG00000021288.20	novel	2268	16	NA	NA	33	0	combination_of_known_splicesites	FALSE	canonical	2	51	junction_12	36.3315595897317	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725315	111773145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755894_111761981_111762113_111772441_111772509_111772748
ENSMUSG00000021288.20_54	chr12	+	3597	2	FSM	ENSMUSG00000021288.20	ENSMUST00000147203.2	968	2	-2626	-3	-2626	3	multi-exon	FALSE	canonical	3	141	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGAATGAAAGCCTGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	111769311	111773148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111772509_111772748
ENSMUSG00000021288.20_6	chr12	+	2412	16	FSM	ENSMUSG00000021288.20	ENSMUST00000084941.12	2504	16	28	64	28	0	multi-exon	FALSE	canonical	2	29	junction_13	35.2026514152935	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725310	111773145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755921_111761981_111762113_111772441_111772509_111772748
ENSMUSG00000021288.20_7	chr12	+	2379	16	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	34	0	combination_of_known_splicesites	FALSE	canonical	2	52	junction_13	31.1312633144811	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725316	111773145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111761981_111762113_111772441_111772509_111772748
ENSMUSG00000021288.20_8	chr12	+	2285	15	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	24	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_13	40.1888399576656	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725306	111773145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755921_111772441_111772509_111772748
ENSMUSG00000021288.20_9	chr12	+	2410	15	NIC	ENSMUSG00000021288.20	novel	2261	14	NA	NA	22	1	combination_of_known_junctions	FALSE	canonical	2	16	junction_13	47.7933476713303	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTGTCTTGTGTCTGTC	NA	False	NA	10	True	AATAAA	-14	NA	111725304	111761330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755921_111760082_111760134_111760770
ENSMUSG00000021290.7_0	chr12	-	368	4	FSM	ENSMUSG00000021290.7	ENSMUST00000021719.7	366	4	-3	1	-3	0	multi-exon	FALSE	canonical	3	2424	junction_1	129.659382828839	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTGCTTCCCCTGAGT	NA	False	NA	-8	True	AATAAA	-17	NA	111933414	111927809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933357
ENSMUSG00000021290.7_1	chr12	-	282	3	ISM	ENSMUSG00000021290.7	ENSMUST00000222874.2	612	4	3570	0	-616	0	3prime_fragment	TRUE	canonical	3	2424	junction_1	139	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTGCTTCCCCTGAGT	NA	False	NA	-8	True	AATAAA	-17	NA	111929758	111927809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_111927973_111928866_111928891_111929663
ENSMUSG00000021294.8_0	chr12	+	6915	16	FSM	ENSMUSG00000021294.8	ENSMUST00000128402.3	6918	16	1	2	1	-2	multi-exon	FALSE	canonical	1	1	junction_13	3.04776785350999	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGGTTCTGACTTTCCG	2027	False	NA	8	True	AATAAA	-17	NA	112112642	112148179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112112841_112113147_112113391_112123681_112124108_112129784_112129976_112135201_112135392_112139004_112139218_112139774_112139869_112140171_112140435_112140534_112140719_112140868_112141032_112141207_112141371_112141919_112144834_112145576_112145783_112145913_112145935_112146228_112146380_112146884
ENSMUSG00000021294.8_4	chr12	+	5155	8	ISM	ENSMUSG00000021294.8	ENSMUST00000128402.3	6918	16	27835	2	-5111	-2	3prime_fragment	FALSE	canonical	1	1	junction_5	4.1057451037714	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGGTTCTGACTTTCCG	9694	False	NA	8	True	AATAAA	-17	NA	112140476	112148179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112140719_112140868_112141032_112141207_112141371_112141919_112144834_112145576_112145783_112145913_112145935_112146228_112146380_112146884
ENSMUSG00000021294.8_5	chr12	+	2854	5	ISM	ENSMUSG00000021294.8	ENSMUST00000128402.3	6918	16	31011	2	-1935	-2	3prime_fragment	FALSE	canonical	1	1	junction_2	5.21416340365355	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGGTTCTGACTTTCCG	NA	False	NA	8	True	AATAAA	-17	NA	112143652	112148179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112144834_112145576_112145783_112145913_112145935_112146228_112146380_112146884
ENSMUSG00000021302.11_0	chr13	-	3168	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	81	995	2	191	multi-exon	FALSE	canonical	3	192	junction_3	35.1883819210577	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCCATAATGTTTTTTTC	NA	False	NA	NA	False	AATAAA	-11	NA	14237992	14226238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
ENSMUSG00000021302.11_11	chr13	-	1653	5	NIC	ENSMUSG00000021302.11	novel	2209	6	NA	NA	6	196	intron_retention	FALSE	canonical	2	12	junction_1	100.568384694197	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAATGTTTTTTTCTTTCC	NA	False	NA	NA	False	AATAAA	-16	NA	14237988	14226233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_14226979_14228494_14229041_14229734_14229806_14232380_14232474_14237790
ENSMUSG00000021302.11_3	chr13	-	3134	1	ISM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	9656	40	357	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATACAAAAATAA	NA	False	NA	-50	True	NA	NA	NA	14228417	14225283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_14225300_14228400
ENSMUSG00000021302.11_4	chr13	-	2268	5	ISM	ENSMUSG00000021302.11	ENSMUST00000222164.2	1340	7	6	729	2	-729	5prime_fragment	FALSE	canonical	3	8	junction_4	116.164484675825	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCATTGTTTTTTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	14237992	14227270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_14229041_14229734_14229806_14232380_14232474_14233903_14234036_14237790
ENSMUSG00000021302.11_8	chr13	-	3311	5	NIC	ENSMUSG00000021302.11	novel	870	5	NA	NA	2	195	intron_retention	FALSE	canonical	3	19	junction_4	113.102829319164	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATAATGTTTTTTTCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	14237992	14226234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_14229041_14229734_14229806_14232380_14232474_14233903_14234043_14237790
ENSMUSG00000021302.11_9	chr13	-	3084	3	FSM	ENSMUSG00000021302.11	ENSMUST00000222687.2	762	3	-12	-2310	-3	186	multi-exon	FALSE	canonical	2	3	junction_2	137.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTATTGCCATAATGTTT	NA	False	NA	NA	False	AATAAA	-6	NA	14238006	14226243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_14229041_14229734_14229806_14237790
ENSMUSG00000021306.12_0	chr13	-	2921	7	FSM	ENSMUSG00000021306.12	ENSMUST00000021738.10	2971	7	38	12	-12	12	multi-exon	FALSE	canonical	3	25	junction_1	74.282680798869	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCTCTTAAATGTTGTCA	NA	False	NA	NA	False	AATAAA	-34	NA	13568161	13532216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_13534009_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ENSMUSG00000021306.12_2	chr13	-	3159	8	FSM	ENSMUSG00000021306.12	ENSMUST00000223093.2	2351	8	-19	-789	12	-2	multi-exon	FALSE	canonical	3	34	junction_1	66.0247325335169	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAATAAAAAGACTACAGCT	NA	False	NA	NA	False	AATAAA	-20	NA	13568168	13532230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_13534009_13535412_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ENSMUSG00000021306.12_4	chr13	-	1951	1	NIC	ENSMUSG00000021306.12	novel	2971	7	NA	NA	8215	4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGACTACAGCTCTTAAA	4355	False	NA	NA	False	AATAAA	-26	NA	13534175	13532224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_13532200_13534200
ENSMUSG00000021306.12_5	chr13	-	3094	7	FSM	ENSMUSG00000021306.12	ENSMUST00000220628.2	3634	7	30	510	1	-510	multi-exon	FALSE	canonical	3	175	junction_3	22.9249984853992	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGGCTATTTCAGTG	NA	False	NA	NA	False	AATAAA	-18	NA	13568179	13533710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ENSMUSG00000021311.10_1	chr13	-	3049	1	ISM	ENSMUSG00000021311.10	ENSMUST00000099856.6	8294	33	72326	9	14718	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTCAAATCTGGTATGAT	NA	False	NA	-9	True	AATAAA	-17	NA	12200655	12197606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_12197600_12200700
ENSMUSG00000021311.10_3	chr13	-	4530	33	FSM	ENSMUSG00000021311.10	ENSMUST00000099856.6	8294	33	-66	3830	-48	-4	multi-exon	FALSE	canonical	3	145	junction_5	17.0824917221552	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCAGTTGAATACAAGG	5895	False	NA	42	True	ATTAAA	-11	NA	12273047	12201427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_12201978_12202926_12203040_12204232_12204426_12205089_12205291_12208499_12208697_12210123_12210280_12212798_12212875_12213931_12214031_12215082_12215165_12219628_12219750_12220175_12220244_12227273_12227375_12227556_12227665_12230298_12230452_12231695_12231786_12236307_12236449_12237040_12237158_12240347_12240528_12242569_12242756_12245830_12245972_12247787_12247901_12250342_12250423_12252866_12252935_12254534_12254597_12256450_12256552_12258820_12258916_12259440_12259504_12262204_12262312_12262778_12262872_12264730_12264801_12265487_12265578_12268649_12268865_12272747
ENSMUSG00000021314.14_0	chr13	+	3219	21	FSM	ENSMUSG00000021314.14	ENSMUST00000200466.5	3224	21	6	-1	6	1	multi-exon	FALSE	canonical	3	27	junction_16	10.4957134107215	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACATGGGTTCTTTTT	NA	False	NA	11	True	AATAAA	-16	NA	19132526	19335083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305502_19309195_19309319_19321705_19321913_19323341_19323603_19326134_19326237_19333905
ENSMUSG00000021314.14_1	chr13	+	3207	21	FSM	ENSMUSG00000021314.14	ENSMUST00000003345.10	3367	21	152	8	6	1	multi-exon	FALSE	canonical	3	40	junction_16	8.61669890387264	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACATGGGTTCTTTTT	NA	False	NA	11	True	AATAAA	-16	NA	19132526	19335083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305490_19309195_19309319_19321705_19321913_19323341_19323603_19326134_19326237_19333905
ENSMUSG00000021314.14_14	chr13	+	1806	4	ISM	ENSMUSG00000021314.14	ENSMUST00000222698.2	3082	20	72666	-6	17694	-3	3prime_fragment	FALSE	canonical	3	65	junction_2	3.29983164553722	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGGTTCTTTTTCAAGA	NA	False	NA	16	True	AATAAA	-21	NA	19321652	19335088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_19321913_19323341_19323603_19326134_19326237_19333905
ENSMUSG00000021314.14_2	chr13	+	3091	20	NIC	ENSMUSG00000021314.14	novel	3760	21	NA	NA	15	-4	combination_of_known_junctions	FALSE	canonical	2	3	junction_16	15.1494859717337	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGGGTTCTTTTTCAAG	NA	False	NA	15	True	AATAAA	-20	NA	19132535	19335087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305502_19321705_19321913_19323341_19323603_19326134_19326237_19333905
ENSMUSG00000021314.14_4	chr13	+	3084	20	NIC	ENSMUSG00000021314.14	novel	3367	21	NA	NA	6	1	combination_of_known_splicesites	FALSE	canonical	3	8	junction_16	14.1794982896135	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACATGGGTTCTTTTT	NA	False	NA	11	True	AATAAA	-16	NA	19132526	19335083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305490_19321705_19321913_19323341_19323603_19326134_19326237_19333905
ENSMUSG00000021318.16_1	chr13	+	8209	15	NIC	ENSMUSG00000021318.16	novel	2004	12	NA	NA	-2	-5	combination_of_known_junctions	FALSE	canonical	2	12	junction_10	4.81970868795353	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATATTCTACTGGATTT	NA	False	NA	NA	False	AATAAA	-14	NA	15637817	15904606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_15637994_15652584_15652750_15722984_15723228_15788363_15788470_15815653_15815860_15818878_15819026_15823105_15823308_15834546_15834761_15835465_15835580_15836974_15837116_15888083_15888234_15889534_15889700_15894639_15894931_15898024_15898353_15899045
ENSMUSG00000021318.16_4	chr13	+	3421	1	ISM	ENSMUSG00000021318.16	ENSMUST00000110510.4	8170	15	262621	5	262621	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATATTCTACTGGATTT	NA	False	NA	NA	False	AATAAA	-14	NA	15901185	15904606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_15901200_15904600
ENSMUSG00000021318.16_8	chr13	+	7605	4	ISM	ENSMUSG00000021318.16	ENSMUST00000110510.4	8170	15	249708	7	249708	-7	3prime_fragment	FALSE	canonical	3	15	junction_2	4.98887651569859	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAATATTCTACTGGAT	NA	False	NA	NA	False	AATAAA	-12	NA	15888272	15904604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_15889700_15894639_15894931_15898024_15898353_15899045
ENSMUSG00000021319.8_1	chr13	+	1835	6	FSM	ENSMUSG00000021319.8	ENSMUST00000002883.7	1764	6	-79	8	-8	-4	multi-exon	FALSE	canonical	2	8	junction_1	1.72046505340853	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATCTTCATGTGTTTG	NA	False	NA	NA	False	GATAAA	-20	NA	19807265	19816991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_19808048_19809197_19809279_19809363_19809430_19811275_19811475_19814235_19814300_19816348
ENSMUSG00000021319.8_2	chr13	+	3893	5	FSM	ENSMUSG00000021319.8	ENSMUST00000222464.2	4049	5	-28	184	-28	-15	multi-exon	FALSE	canonical	3	8	junction_1	1.80277563773199	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGATACTTAAAAGATCT	NA	False	NA	NA	False	ATTAAA	-36	NA	19807245	19816980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_19808048_19809197_19809279_19809363_19809430_19811275_19811475_19814235
ENSMUSG00000021322.9_1	chr13	+	1850	11	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74238	-5	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_6	9.14549069213894	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTGGTGTGGGCATAA	NA	False	NA	18	True	AATAAA	-42	NA	21120564	21208417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21179665_21184067_21184241_21186824_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
ENSMUSG00000021322.9_16	chr13	+	3594	5	ISM	ENSMUSG00000021322.9	ENSMUST00000021757.5	2921	21	206280	5	-10240	-5	3prime_fragment	FALSE	canonical	3	57	junction_2	6.44204936336256	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTGGTGTGGGCATAA	694	False	NA	18	True	AATAAA	-42	NA	21184562	21208417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
ENSMUSG00000021326.14_0	chr13	+	2067	8	FSM	ENSMUSG00000021326.14	ENSMUST00000021761.13	4204	8	275	1862	-18	-2	multi-exon	TRUE	canonical	3	719	junction_6	36.2209771220141	1105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATACGTTTTGTTTTTGTT	1204	False	NA	19	True	AATAAA	-21	NA	21364375	21377031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_21365085_21366153_21366250_21367901_21368133_21372210_21372234_21374024_21374141_21374261_21374295_21375389_21375417_21376199
ENSMUSG00000021326.14_2	chr13	+	1528	1	FSM	ENSMUSG00000021326.14	ENSMUST00000124052.3	1750	1	216	6	-50	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGTATTCATCTGAGAAA	1172	False	NA	12	True	AATAAA	-13	NA	21364343	21365871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_21364300_21365900
ENSMUSG00000021327.20_0	chr13	-	1696	1	NIC	ENSMUSG00000021327.20	novel	2561	6	NA	NA	6056	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTCAGCCTGTTGGTTC	NA	False	NA	-7	True	AATAAA	-14	NA	21572877	21571181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_21571200_21572900
ENSMUSG00000021327.20_1	chr13	-	2543	6	FSM	ENSMUSG00000021327.20	ENSMUST00000116434.11	2600	6	48	9	6	-9	multi-exon	FALSE	canonical	3	29	junction_5	29.6486087363303	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTCAGCCTGTTGGTTC	NA	False	NA	-7	True	AATAAA	-14	NA	21586877	21571181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580745_21586841
ENSMUSG00000021327.20_15	chr13	-	3069	4	ISM	ENSMUSG00000021327.20	ENSMUST00000070785.16	2561	6	6769	10	-1181	-10	3prime_fragment	FALSE	canonical	3	99	junction_2	7.07106781186548	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGCTCAGCCTGTTGGTT	NA	False	NA	-8	True	AATAAA	-13	NA	21580114	21571182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928
ENSMUSG00000021327.20_2	chr13	-	2798	6	NIC	ENSMUSG00000021327.20	novel	2561	6	NA	NA	-10	-10	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	37.8386046254351	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGCTCAGCCTGTTGGTT	NA	False	NA	-8	True	AATAAA	-13	NA	21586850	21571182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586561
ENSMUSG00000021327.20_3	chr13	-	2545	6	FSM	ENSMUSG00000021327.20	ENSMUST00000070785.16	2561	6	7	9	7	-9	multi-exon	FALSE	canonical	3	51	junction_5	21.2452347598232	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTCAGCCTGTTGGTTC	NA	False	NA	-7	True	AATAAA	-14	NA	21586876	21571181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586841
ENSMUSG00000021327.20_5	chr13	-	2497	5	ISM	ENSMUSG00000021327.20	ENSMUST00000070785.16	2561	6	6149	9	-1801	-9	3prime_fragment	FALSE	canonical	3	91	junction_4	8.31790237980706	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTCAGCCTGTTGGTTC	NA	False	NA	-7	True	AATAAA	-14	NA	21580734	21571181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269
ENSMUSG00000021338.18_0	chr13	-	5313	37	NIC	ENSMUSG00000021338.18	novel	4988	38	NA	NA	-167	-5	combination_of_known_junctions	FALSE	canonical	3	145	junction_10	17.5664523143855	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGAACTTGACTTCTTC	NA	False	NA	-6	True	AATAAA	-11	NA	24464945	24196471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_24197444_24206478_24206620_24208305_24208519_24209836_24209919_24220167_24220592_24225655_24225769_24228156_24228354_24228998_24229066_24248559_24248710_24251114_24251203_24253613_24253790_24257922_24258055_24259594_24259724_24265911_24266011_24272960_24273055_24276488_24276558_24278380_24278554_24282788_24282844_24282943_24283044_24283564_24283647_24290291_24290362_24292472_24292578_24295792_24295870_24295996_24296075_24299457_24299562_24305821_24305909_24321119_24321215_24323271_24323361_24325638_24325715_24338660_24338735_24338966_24339038_24339372_24339471_24348783_24348906_24357598_24357659_24362189_24362241_24460439_24460538_24464543
ENSMUSG00000021338.18_1	chr13	-	5189	36	NIC	ENSMUSG00000021338.18	novel	4988	38	NA	NA	-178	1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	32.6455797551678	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGACTTCTTCCAGTTC	NA	False	NA	0	True	AATAAA	-17	NA	24464956	24196465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_24197444_24208305_24208519_24209836_24209919_24220167_24220592_24225655_24225769_24228156_24228354_24228998_24229066_24248559_24248710_24251114_24251203_24253613_24253790_24257922_24258055_24259594_24259724_24265911_24266011_24272960_24273055_24276488_24276558_24278380_24278554_24282788_24282844_24282943_24283044_24283564_24283647_24290291_24290362_24292472_24292578_24295792_24295870_24295996_24296075_24299457_24299562_24305821_24305909_24321119_24321215_24323271_24323361_24325638_24325715_24338660_24338735_24338966_24339038_24339372_24339471_24348783_24348906_24357598_24357659_24362189_24362241_24460439_24460538_24464543
ENSMUSG00000021338.18_4	chr13	-	2308	9	ISM	ENSMUSG00000021338.18	ENSMUST00000072889.12	4988	38	216126	-176	-5350	1	3prime_fragment	FALSE	canonical	3	158	junction_2	14.2038727113418	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGACTTCTTCCAGTTC	9150	False	NA	0	True	AATAAA	-17	NA	24248652	24196465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_24197444_24206478_24206620_24208305_24208519_24209836_24209919_24220167_24220592_24225655_24225769_24228156_24228354_24228998_24229066_24248559
ENSMUSG00000021338.18_5	chr13	-	4679	34	NIC	ENSMUSG00000021338.18	novel	4988	38	NA	NA	-23049	1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	33.2502822126013	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGACTTCTTCCAGTTC	NA	False	NA	0	True	AATAAA	-17	NA	24362241	24196465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_24197444_24208305_24208519_24209836_24209919_24220167_24220592_24225655_24225769_24228156_24228354_24228998_24229066_24248559_24248710_24251114_24251203_24253613_24253790_24257922_24258055_24259594_24259724_24265911_24266011_24272960_24273055_24276488_24276558_24278380_24278554_24282788_24282844_24282943_24283044_24283564_24283647_24290291_24290362_24292472_24292578_24295792_24295870_24295996_24296075_24299457_24299562_24305821_24305909_24321119_24321215_24323271_24323361_24325638_24325715_24338660_24338735_24338966_24339038_24339372_24339471_24348783_24348906_24357598_24357659_24362189
ENSMUSG00000021339.5_0	chr13	-	3177	11	FSM	ENSMUSG00000021339.5	ENSMUST00000021772.4	7035	11	63	3795	63	2338	multi-exon	FALSE	canonical	3	167	junction_5	19.2792634714089	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAAGATGTTTGGATTT	NA	False	NA	NA	False	AATACA	-16	NA	25204299	25175260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_25177172_25177652_25177767_25178707_25178826_25179327_25179481_25181010_25181128_25182907_25183039_25185609_25185784_25188925_25189039_25190421_25190459_25202502_25202577_25204064
ENSMUSG00000021339.5_1	chr13	-	3587	1	ISM	ENSMUSG00000021339.5	ENSMUST00000021772.4	7035	11	29301	9	3721	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATCAGCAGTCTGGAC	NA	False	NA	-8	True	AATAAA	-8	NA	25175061	25171474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_25171500_25175100
ENSMUSG00000021340.14_0	chr13	+	2778	19	ISM	ENSMUSG00000021340.14	ENSMUST00000021773.13	5224	26	15650	1748	2948	-1748	3prime_fragment	FALSE	canonical	0	0	junction_4	1.63771144144263	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTTTATCTTGGGTAT	NA	False	NA	NA	False	NA	NA	NA	25142784	25174736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_25142948_25146302_25146411_25146609_25146638_25146720_25146861_25150620_25150684_25152293_25152418_25155374_25155515_25159581_25159769_25163361_25163473_25163654_25163730_25163820_25163978_25164939_25165082_25166490_25166600_25166680_25166775_25168010_25168191_25168690_25168852_25170874_25170902_25170991_25171043_25174018
ENSMUSG00000021357.15_0	chr13	-	4254	28	FSM	ENSMUSG00000021357.15	ENSMUST00000021785.8	4256	28	1	1	1	-1	multi-exon	FALSE	canonical	3	102	junction_19	19.2909994862811	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTGTGTTTGTGTCTTC	NA	False	NA	-3	True	AATAAA	-19	NA	31158036	30997902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31157978
ENSMUSG00000021357.15_12	chr13	-	4301	29	NIC	ENSMUSG00000021357.15	novel	4375	29	NA	NA	13	-1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_28	35.6224533640437	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTGTGTTTGTGTCTTC	NA	False	NA	-3	True	AATAAA	-19	NA	31158024	30997902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31130347_31130407_31157978
ENSMUSG00000021357.15_27	chr13	-	4198	27	ISM	ENSMUSG00000021357.15	ENSMUST00000102946.8	4375	29	9525	2	9525	-2	3prime_fragment	FALSE	canonical	3	102	junction_19	19.0090682190425	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGTTGTGTTTGTGTCTT	NA	False	NA	-4	True	AATAAA	-18	NA	31124756	30997903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592
ENSMUSG00000021359.17_4	chr13	-	1131	4	ISM	ENSMUSG00000021359.17	ENSMUST00000225180.2	1828	6	5790	-126	5790	7	3prime_fragment	FALSE	canonical	2	9	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATACAGAAGTTCTATG	NA	False	NA	NA	False	AATAAA	-8	NA	40876630	40870073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_40870880_40872667_40872810_40874744_40874864_40876566
ENSMUSG00000021360.17_0	chr13	+	4006	3	FSM	ENSMUSG00000021360.17	ENSMUST00000110191.10	4352	3	348	-2	348	2	multi-exon	FALSE	canonical	3	38	junction_1	71.5	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGAATAGTGGATATTTA	NA	False	NA	17	True	AATAAA	-22	NA	41013577	41114365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_41014750_41107051_41107148_41111627
ENSMUSG00000021360.17_10	chr13	+	3984	3	FSM	ENSMUSG00000021360.17	ENSMUST00000067778.8	4038	3	51	3	2	2	multi-exon	FALSE	canonical	3	123	junction_1	29	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGAATAGTGGATATTTA	NA	False	NA	17	True	AATAAA	-22	NA	41071127	41114365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_41072278_41107051_41107148_41111627
ENSMUSG00000021360.17_18	chr13	+	1944	1	ISM	ENSMUSG00000021360.17	ENSMUST00000069958.15	3929	3	71753	2	5531	2	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGAATAGTGGATATTTA	NA	False	NA	17	True	AATAAA	-22	NA	41112421	41114365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_41112400_41114400
ENSMUSG00000021360.17_5	chr13	+	4251	3	FSM	ENSMUSG00000021360.17	ENSMUST00000069958.15	3929	3	-324	2	-324	2	multi-exon	FALSE	canonical	3	51	junction_1	65	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGAATAGTGGATATTTA	NA	False	NA	17	True	AATAAA	-22	NA	41040344	41114365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_41041762_41107051_41107148_41111627
ENSMUSG00000021361.8_0	chr13	+	894	6	FSM	ENSMUSG00000021361.8	ENSMUST00000021790.7	914	6	9	11	9	-11	multi-exon	FALSE	canonical	3	613	junction_2	43.7154434954056	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACACTTCTCTGGTGTC	NA	False	NA	4	True	AATAAA	-11	NA	41169776	41176051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_41169875_41170590_41170650_41171181_41171259_41171831_41171934_41174594_41174683_41175581
ENSMUSG00000021361.8_3	chr13	+	835	5	NIC	ENSMUSG00000021361.8	novel	914	6	NA	NA	9	-11	combination_of_known_splicesites	FALSE	canonical	3	108	junction_1	251.069089097005	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACACTTCTCTGGTGTC	NA	False	NA	4	True	AATAAA	-11	NA	41169776	41176051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_41169875_41171181_41171259_41171831_41171934_41174594_41174683_41175581
ENSMUSG00000021361.8_9	chr13	+	737	4	ISM	ENSMUSG00000021361.8	ENSMUST00000021790.7	914	6	1414	11	1414	-11	3prime_fragment	FALSE	canonical	3	639	junction_2	42.1215173304835	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACACTTCTCTGGTGTC	NA	False	NA	4	True	AATAAA	-11	NA	41171181	41176051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_41171259_41171831_41171934_41174594_41174683_41175581
ENSMUSG00000021362.8_0	chr13	-	2722	4	ISM	ENSMUSG00000021362.8	ENSMUST00000021791.8	3073	5	4315	-1	-185	0	3prime_fragment	FALSE	canonical	3	9	junction_3	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAATCTCTTCAAGAGT	NA	False	NA	NA	False	NA	NA	NA	41259344	41254902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_41257166_41258044_41258171_41258886_41259000_41259124
ENSMUSG00000021362.8_1	chr13	-	922	1	ISM	ENSMUSG00000021362.8	ENSMUST00000225420.2	2662	3	3329	6	3329	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGAAGTTAATCTCTTC	NA	False	NA	NA	False	NA	NA	NA	41255830	41254908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_41254900_41255800
ENSMUSG00000021363.15_6	chr13	-	3409	13	NIC	ENSMUSG00000021363.15	novel	3562	15	NA	NA	4	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	2.20321734440038	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTCGTTGTGGTTGTTT	1985	False	NA	NA	False	ATTAAA	-17	NA	41233114	41178485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_41180039_41188229_41188362_41193104_41193254_41195494_41195662_41199494_41199807_41201528_41201697_41202783_41202956_41204845_41204979_41206770_41206851_41209169_41209292_41210078_41210134_41223612_41223942_41233077
ENSMUSG00000021363.15_8	chr13	-	1638	10	ISM	ENSMUSG00000021363.15	ENSMUST00000165087.8	3562	15	77	16827	13	7442	5prime_fragment	FALSE	canonical	1	1	junction_3	2.00616334280753	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGGATCAGTTATTTCTT	1994	False	NA	NA	False	ATTAAA	-8	NA	41233105	41195422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_41195662_41199494_41199807_41201528_41201697_41202783_41202956_41204845_41204979_41206770_41206851_41209169_41209292_41210078_41210134_41223612_41223942_41233077
ENSMUSG00000021364.17_0	chr13	-	3719	8	FSM	ENSMUSG00000021364.17	ENSMUST00000021793.15	3840	8	0	121	0	-3	multi-exon	FALSE	canonical	3	52	junction_4	7.79848232226067	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAAACATCTTGCAACTT	7559	False	NA	NA	False	AATAAA	-12	NA	41373881	41335977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122_41348311_41350610_41350675_41373830
ENSMUSG00000021364.17_19	chr13	-	3604	6	ISM	ENSMUSG00000021364.17	ENSMUST00000117096.2	3797	8	25326	5	25326	-5	3prime_fragment	FALSE	canonical	3	52	junction_4	9.06421535489973	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACTAAAACATCTTGCAAC	NA	False	NA	NA	False	AATAAA	-10	NA	41348312	41335979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122
ENSMUSG00000021364.17_2	chr13	-	3675	7	ISM	ENSMUSG00000021364.17	ENSMUST00000117096.2	3797	8	22963	-3	22963	3	3prime_fragment	FALSE	canonical	3	52	junction_4	8.28653526310404	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTTGCAACTTTTCTTA	9204	False	NA	NA	False	AATAAA	-18	NA	41350675	41335971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122_41348311_41350610
ENSMUSG00000021364.17_4	chr13	-	3974	8	FSM	ENSMUSG00000021364.17	ENSMUST00000117096.2	3797	8	-182	5	61	-5	multi-exon	FALSE	canonical	1	1	junction_7	22.3533771360785	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACTAAAACATCTTGCAAC	7620	False	NA	NA	False	AATAAA	-10	NA	41373820	41335979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122_41348311_41350610_41350675_41373512
ENSMUSG00000021365.16_0	chr13	-	4310	7	FSM	ENSMUSG00000021365.16	ENSMUST00000163623.3	4626	7	252	64	252	-64	multi-exon	FALSE	canonical	1	1	junction_3	1.46249406456535	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCACTGGGTTTCTTTTCC	NA	False	NA	NA	False	ATTAAA	-22	NA	41512471	41463459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_41465647_41467841_41467932_41469249_41470492_41471337_41471440_41471919_41472022_41492052_41492497_41512328
ENSMUSG00000021366.9_1	chr13	+	8883	9	FSM	ENSMUSG00000021366.9	ENSMUST00000060148.6	8753	9	-130	0	-130	0	multi-exon	FALSE	canonical	1	3	junction_2	8.24526379202024	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGGTGCTTACGTCTC	NA	False	NA	2	True	AGTAAA	-15	NA	42205366	42338502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_42205567_42208875_42209019_42276635_42276690_42307855_42313795_42316826_42316961_42317692_42317869_42321037_42321140_42334907_42335408_42336867
ENSMUSG00000021366.9_2	chr13	+	4864	6	ISM	ENSMUSG00000021366.9	ENSMUST00000060148.6	8753	9	105977	4	864	-4	3prime_fragment	FALSE	canonical	3	15	junction_2	3.32264954516723	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTTACTGGTGCTTACG	4196	False	NA	-2	True	AGTAAA	-11	NA	42311473	42338498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_42313795_42316826_42316961_42317692_42317869_42321037_42321140_42334907_42335408_42336867
ENSMUSG00000021366.9_4	chr13	+	2521	5	ISM	ENSMUSG00000021366.9	ENSMUST00000060148.6	8753	9	111352	4	-949	-4	3prime_fragment	FALSE	canonical	3	15	junction_1	3.69966214673719	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTTACTGGTGCTTACG	9571	False	NA	-2	True	AGTAAA	-11	NA	42316848	42338498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_42316961_42317692_42317869_42321037_42321140_42334907_42335408_42336867
ENSMUSG00000021366.9_9	chr13	+	8491	8	ISM	ENSMUSG00000021366.9	ENSMUST00000060148.6	8753	9	3375	196	2992	-196	3prime_fragment	FALSE	canonical	1	3	junction_1	7.75386671149252	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATGTTGCACTGTTAAA	NA	False	NA	NA	False	AATAAA	-14	NA	42208871	42338306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_42209019_42276635_42276690_42307855_42313795_42316826_42316961_42317692_42317869_42321037_42321140_42334907_42335408_42336867
ENSMUSG00000021367.9_0	chr13	+	2181	5	FSM	ENSMUSG00000021367.9	ENSMUST00000021796.9	2139	5	-44	2	-44	-2	multi-exon	FALSE	canonical	1	1	junction_4	2.44948974278318	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGACTTGTGAATTATTT	NA	False	NA	NA	False	AATAAA	-16	NA	42454907	42461464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_42455435_42457032_42457202_42458421_42458581_42458730_42458845_42460252
ENSMUSG00000021368.16_0	chr13	-	1206	8	FSM	ENSMUSG00000021368.16	ENSMUST00000179852.9	1246	8	34	6	20	-2	multi-exon	FALSE	canonical	3	148	junction_7	48.9393627307283	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAATGCCTGGCGTGGCC	NA	False	NA	-23	True	AGTAAA	-10	NA	43324926	43305221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324784
ENSMUSG00000021368.16_1	chr13	-	1204	8	FSM	ENSMUSG00000021368.16	ENSMUST00000021797.9	1239	8	31	4	0	-4	multi-exon	FALSE	canonical	1	7	junction_7	94.4833426632246	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAAAATGCCTGGCGTGG	NA	False	NA	-25	True	AGTAAA	-8	NA	43324946	43305223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324804
ENSMUSG00000021371.6_0	chr13	-	2914	1	ISM	ENSMUSG00000021371.6	ENSMUST00000021800.6	4339	9	18836	19	4795	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAATTTTCTTTCTTAAC	NA	False	NA	NA	False	AATAAA	-10	NA	43694801	43691887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_43691900_43694800
ENSMUSG00000021371.6_1	chr13	-	1367	9	FSM	ENSMUSG00000021371.6	ENSMUST00000021800.6	4339	9	7	2965	7	341	multi-exon	FALSE	canonical	3	180	junction_1	32.5720355519885	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGCAGTTTGTAAGGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	43713630	43694833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_43695206_43697931_43698047_43699163_43699218_43702126_43702199_43703007_43703050_43704472_43704575_43705072_43705177_43708371_43708492_43713244
ENSMUSG00000021373.17_0	chr13	+	2832	13	FSM	ENSMUSG00000021373.17	ENSMUST00000021802.16	3713	13	229	652	-48	-6	multi-exon	FALSE	canonical	3	12	junction_1	4.58257569495584	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATACTGAGATGAATTC	NA	False	NA	NA	False	AGTAAA	-26	NA	46655552	46803105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_46655688_46678890_46679013_46684452_46684554_46713979_46714058_46763071_46763216_46763539_46763626_46768725_46768832_46789096_46789287_46791324_46791498_46793298_46793423_46793515_46793599_46800001_46800143_46801756
ENSMUSG00000021374.11_11	chr13	-	3285	7	ISM	ENSMUSG00000021374.11	ENSMUST00000021803.10	6109	22	34145	201	310	-201	3prime_fragment	TRUE	canonical	3	290	junction_5	17.3877351409933	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATTTGTTAACAGTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	46847271	46833581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_46834719_46834999_46835169_46836472_46836746_46837358_46837713_46840098_46840975_46842534_46842727_46846987
ENSMUSG00000021374.11_15	chr13	-	2404	5	ISM	ENSMUSG00000021374.11	ENSMUST00000021803.10	6109	22	40845	203	-3081	-203	3prime_fragment	FALSE	canonical	3	327	junction_2	5.76085931090146	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAAATTTGTTAACAGTT	NA	False	NA	NA	False	AATAAA	-9	NA	46840571	46833583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_46834719_46834999_46835169_46836472_46836746_46837358_46837713_46840098
ENSMUSG00000021374.11_2	chr13	-	5933	22	FSM	ENSMUSG00000021374.11	ENSMUST00000021803.10	6109	22	-27	203	-27	-203	multi-exon	TRUE	canonical	3	242	junction_11	30.6722857910241	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAAATTTGTTAACAGTT	NA	False	NA	NA	False	AATAAA	-9	NA	46881443	46833583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_46834719_46834999_46835169_46836472_46836746_46837358_46837713_46840098_46840975_46842534_46842727_46846987_46847594_46850121_46850245_46853124_46853210_46854464_46854564_46855079_46855215_46858115_46858243_46858644_46858692_46861222_46861370_46863104_46863159_46863241_46863287_46863387_46863505_46866108_46866238_46866316_46866457_46867096_46867346_46870576_46870800_46880835
ENSMUSG00000021375.12_2	chr13	-	1924	2	ISM	ENSMUSG00000021375.12	ENSMUST00000223881.2	3917	16	34167	-1	72	1	3prime_fragment	FALSE	canonical	3	55	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAAAGTGTTGATCGTCT	NA	False	NA	-5	True	AATACA	-17	NA	46905947	46902569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_46904103_46905556
ENSMUSG00000021375.12_22	chr13	-	7023	39	NIC	ENSMUSG00000021375.12	novel	6866	38	NA	NA	-62	-2	combination_of_known_junctions	FALSE	canonical	3	30	junction_28	14.9840404478914	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTCCAAAGTGTTGATCG	NA	False	NA	-8	True	AATACA	-14	NA	47083256	46902572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_46904103_46905556_46906349_46914138_46914244_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988_46940122_46941533_46941686_46944809_46944984_46947366_46947529_46951817_46951968_46952668_46952810_46954756_46954920_46955991_46956206_46962366_46962534_46962633_46962721_46964166_46964298_46966204_46966340_46967635_46967747_46968685_46968899_46969762_46969875_46977424_46977538_46978681_46978817_46980168_46980257_46984269_46984451_46986199_46986293_47001801_47001863_47018294_47018308_47082691_47082783_47083042
ENSMUSG00000021375.12_43	chr13	-	3990	16	FSM	ENSMUSG00000021375.12	ENSMUST00000223881.2	3917	16	-75	2	-75	-2	multi-exon	FALSE	canonical	3	34	junction_2	16.4059609762902	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTCCAAAGTGTTGATCG	NA	False	NA	-8	True	AATACA	-14	NA	46940189	46902572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_46904103_46905556_46906349_46914138_46914244_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988
ENSMUSG00000021375.12_53	chr13	-	6139	37	ISM	ENSMUSG00000021375.12	ENSMUST00000056978.8	6866	38	-61	2242	-61	-816	5prime_fragment	FALSE	canonical	3	23	junction_1	15.8397404190602	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAATAAATAAATTTT	NA	False	NA	NA	False	NA	NA	NA	47083255	46904804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_46906349_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988_46940122_46941533_46941686_46944809_46944984_46947366_46947529_46951817_46951968_46952668_46952810_46954756_46954920_46955991_46956206_46962366_46962534_46962633_46962721_46964166_46964298_46966204_46966340_46967635_46967747_46968685_46968899_46969762_46969875_46977424_46977538_46978681_46978817_46980168_46980257_46984269_46984451_46986199_46986293_47001801_47001863_47018294_47018308_47082691_47082783_47083042
ENSMUSG00000021375.12_60	chr13	-	2467	14	ISM	ENSMUSG00000021375.12	ENSMUST00000223881.2	3917	16	-100	10794	-100	-9376	5prime_fragment	FALSE	canonical	3	46	junction_1	14.0830167558924	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAACCTATGAAATGC	NA	False	NA	-29	True	AATAAA	-12	NA	46940214	46913364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_46914244_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988
ENSMUSG00000021375.12_73	chr13	-	3313	23	ISM	ENSMUSG00000021375.12	ENSMUST00000056978.8	6866	38	-61	38758	-61	-10	5prime_fragment	FALSE	canonical	3	30	junction_12	8.75941052396066	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTATATGGGAAAAAAATC	NA	False	NA	NA	False	AATAAA	-5	NA	47083255	46941320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_46941686_46944809_46944984_46947366_46947529_46951817_46951968_46952668_46952810_46954756_46954920_46955991_46956206_46962366_46962534_46962633_46962721_46964166_46964298_46966204_46966340_46967635_46967747_46968685_46968899_46969762_46969875_46977424_46977538_46978681_46978817_46980168_46980257_46984269_46984451_46986199_46986293_47001801_47001863_47018294_47018308_47082691_47082783_47083042
ENSMUSG00000021375.12_8	chr13	-	1386	1	ISM	ENSMUSG00000021375.12	ENSMUST00000056978.8	6866	38	179236	10	2061	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTCCAAAGTGTTGATCG	NA	False	NA	-8	True	AATACA	-14	NA	46903958	46902572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_46902600_46904000
ENSMUSG00000021376.12_1	chr13	-	967	8	ISM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	1629	1636	0	0	3prime_fragment	FALSE	canonical	3	106	junction_1	10.9935045757549	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTAGCCATGGTTTC	NA	False	NA	-2	True	ATTAAA	-17	NA	47195057	47178654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874
ENSMUSG00000021376.12_11	chr13	-	630	6	ISM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	7244	1636	5615	0	3prime_fragment	FALSE	canonical	3	106	junction_1	11.0815161417561	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTAGCCATGGTTTC	NA	False	NA	-2	True	ATTAAA	-17	NA	47189442	47178654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370
ENSMUSG00000021376.12_2	chr13	-	1006	9	NIC	ENSMUSG00000021376.12	novel	2708	9	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_8	30.2438010177292	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTAGCCATGGTTTC	NA	False	NA	-2	True	ATTAAA	-17	NA	47196643	47178654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196602
ENSMUSG00000021376.12_3	chr13	-	1004	9	FSM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	68	1636	2	0	multi-exon	FALSE	canonical	3	68	junction_8	22.6436387314407	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTAGCCATGGTTTC	NA	False	NA	-2	True	ATTAAA	-17	NA	47196618	47178654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196579
ENSMUSG00000021377.16_0	chr13	-	2535	10	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	353	3	-7	-3	3prime_fragment	FALSE	canonical	3	1428	junction_1	93.7092956902645	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGTCTTGTATTTAATC	NA	False	NA	-18	True	AATAAA	-17	NA	47259313	47238260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
ENSMUSG00000021377.16_1	chr13	-	2545	11	FSM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	8	3	1	-3	multi-exon	FALSE	canonical	3	1333	junction_10	113.482333426838	2010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGTCTTGTATTTAATC	NA	False	NA	-18	True	AATAAA	-17	NA	47259658	47238260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
ENSMUSG00000021379.3_0	chr13	+	2439	3	FSM	ENSMUSG00000021379.3	ENSMUST00000021810.3	3849	3	-111	1521	-111	-1521	multi-exon	FALSE	canonical	3	109	junction_1	7	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTACTGTGACTTCTG	NA	False	NA	-5	True	ATTAAA	-14	NA	48414592	48417981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_48415415_48415760_48415824_48416427
ENSMUSG00000021384.15_0	chr13	-	944	4	NIC	ENSMUSG00000021384.15	novel	1418	5	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	5.8878405775519	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGGTAGCCACCTTAT	NA	False	NA	0	True	AATAAA	-12	NA	49401628	49384308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_49384808_49390899_49391089_49392264_49392413_49401520
ENSMUSG00000021384.15_1	chr13	-	1133	5	FSM	ENSMUSG00000021384.15	ENSMUST00000058196.13	1418	5	142	143	2	-4	multi-exon	FALSE	canonical	2	5	junction_4	5.02493781056044	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGGTAGCCACCTTAT	NA	False	NA	0	True	AATAAA	-12	NA	49401628	49384308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_49384808_49390899_49391089_49392264_49392413_49393958_49394148_49401520
ENSMUSG00000021385.11_0	chr13	+	2822	13	FSM	ENSMUSG00000021385.11	ENSMUST00000220447.2	4421	13	8	1591	8	-8	multi-exon	FALSE	canonical	3	101	junction_9	16.41053184865	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAACATCCTATAGAGTT	NA	False	NA	3	True	NA	NA	NA	49574732	49616458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_49574943_49584344_49584393_49585845_49585942_49587304_49587372_49588945_49589068_49590186_49590277_49595428_49595488_49596897_49596971_49599778_49600053_49602712_49602864_49603456_49603560_49612088_49612169_49615009
ENSMUSG00000021391.11_0	chr13	-	3080	7	NIC	ENSMUSG00000021391.11	novel	1144	8	NA	NA	1	1598	intron_retention	FALSE	canonical	3	162	junction_5	23.8793262514298	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAATTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49806242	49615900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801131_49803596_49803776_49806058
ENSMUSG00000021391.11_1	chr13	-	1121	8	FSM	ENSMUSG00000021391.11	ENSMUST00000021818.9	1144	8	19	4	1	-4	multi-exon	FALSE	canonical	3	162	junction_6	22.1387092889263	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGTATAGTGCTTTGTAC	NA	False	NA	-8	True	AATAAA	-17	NA	49806242	49617502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801131_49803596_49803776_49806058
ENSMUSG00000021391.11_3	chr13	-	1028	7	NIC	ENSMUSG00000021391.11	novel	1144	8	NA	NA	5	-4	combination_of_known_splicesites	FALSE	canonical	3	20	junction_5	68.711959172573	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGTATAGTGCTTTGTAC	NA	False	NA	-8	True	AATAAA	-17	NA	49806238	49617502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49803596_49803776_49806058
ENSMUSG00000021392.9_36	chr13	+	2369	11	ISM	ENSMUSG00000021392.9	ENSMUST00000021824.8	4242	18	8739	37	-4428	-1	3prime_fragment	FALSE	canonical	3	121	junction_7	23.7	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGTTTATTCCTAATT	817	False	NA	6	True	AATAAA	-12	NA	49815564	49832454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
ENSMUSG00000021392.9_5	chr13	+	4349	17	FSM	ENSMUSG00000021392.9	ENSMUST00000222197.2	4368	17	256	-237	1	-4	multi-exon	FALSE	canonical	3	121	junction_13	21.5653077882046	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTGTGTTTATTCCTA	NA	False	NA	3	True	AATAAA	-9	NA	49806809	49832451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
ENSMUSG00000021395.12_1	chr13	+	4439	6	FSM	ENSMUSG00000021395.12	ENSMUST00000095797.6	4434	6	-6	1	-6	-1	multi-exon	FALSE	canonical	3	703	junction_1	64.2227374066226	1375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTTGTGGCTGTGAACTT	NA	False	NA	NA	False	AATAAA	-12	NA	51254909	51306581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_51255027_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
ENSMUSG00000021395.12_28	chr13	+	2622	1	ISM	ENSMUSG00000021395.12	ENSMUST00000095797.6	4434	6	49045	0	15606	0	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTGGCTGTGAACTTT	NA	False	NA	NA	False	AATAAA	-13	NA	51303960	51306582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_51304000_51306600
ENSMUSG00000021396.6_0	chr13	+	1199	2	FSM	ENSMUSG00000021396.6	ENSMUST00000021828.6	1167	2	-39	7	-39	-7	multi-exon	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGAGCAGCTCTGATGT	NA	False	NA	NA	False	AATAAA	-12	NA	51325018	51329217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_51325661_51328660
ENSMUSG00000021400.9_0	chr13	+	2613	7	FSM	ENSMUSG00000021400.9	ENSMUST00000021832.7	2633	7	14	6	14	-4	multi-exon	FALSE	canonical	3	161	junction_2	20.5081284697881	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTACTCTTCAGTTCTTC	NA	False	NA	8	True	AATAAA	-9	NA	32986034	33006586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_32987028_32989320_32989513_32990741_32990984_33000235_33000466_33004201_33004358_33005021_33005102_33005866
ENSMUSG00000021403.4_0	chr13	+	1825	7	FSM	ENSMUSG00000021403.4	ENSMUST00000006392.3	3253	7	124	1304	-11	-1304	multi-exon	FALSE	canonical	3	32	junction_4	6.66874967458085	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTGACATGCCATGGTC	NA	False	NA	4	True	AATAAA	-17	NA	33211522	33224563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_33211584_33213434_33213613_33216898_33217037_33217509_33217628_33219498_33219642_33221954_33222111_33223532
ENSMUSG00000021408.16_0	chr13	+	4683	12	Fusion	ENSMUSG00000091462.3_ENSMUSG00000021408.16	novel	3266	11	NA	NA	9	128	multi-exon	FALSE	canonical	3	30	junction_11	5.53277238352834	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATACTGCTCATGTTGGC	NA	False	NA	NA	False	AATAAA	-10	NA	34186391	34219147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr13_+_34186690_34193583_34193804_34194527_34194685_34197232_34197371_34199108_34199341_34200979_34201130_34205363_34205441_34210724_34210816_34211700_34212235_34214022_34214164_34216478_34217402_34217425
ENSMUSG00000021408.16_2	chr13	+	4702	11	FSM	ENSMUSG00000091462.3_ENSMUSG00000021408.16	ENSMUST00000021844.15	3266	11	46	-1482	9	123	multi-exon	FALSE	canonical	3	34	junction_7	4.38634243989226	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACTATACTGCTCATG	NA	False	NA	NA	False	AATAAA	-5	NA	34186391	34219142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_34186690_34193583_34193804_34194527_34194685_34197232_34197371_34199108_34199341_34200979_34201130_34205363_34205441_34210724_34210816_34211700_34212235_34214022_34214164_34216478
ENSMUSG00000021411.17_0	chr13	-	1870	5	FSM	ENSMUSG00000021411.17	ENSMUST00000053459.15	2684	5	807	7	2	0	multi-exon	FALSE	canonical	2	3	junction_4	2.06155281280883	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGAGAGGATGTTTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	34836662	34811823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_34812872_34814333_34814446_34822147_34822266_34822989_34823082_34836162
ENSMUSG00000021413.10_0	chr13	+	4041	19	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	25	-4	intron_retention	FALSE	canonical	3	35	junction_16	53.2687108493866	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATACCGTCTACTGGCAT	NA	False	NA	10	True	AATAAA	-15	NA	35059511	35090043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35086115_35086612_35086659_35087169_35087257_35088026_35088073_35089865
ENSMUSG00000021413.10_1	chr13	+	4421	15	FSM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	228	3195	26	194	multi-exon	FALSE	canonical	3	139	junction_7	21.2239035437088	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGCATTTGTAGCCAT	NA	False	NA	4	True	AATAAA	-11	NA	35059512	35086852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375
ENSMUSG00000021413.10_50	chr13	+	3640	14	ISM	ENSMUSG00000021413.10	ENSMUST00000222509.2	3648	16	8236	-194	-4354	194	intron_retention	FALSE	canonical	3	139	junction_6	21.9819721724807	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGCATTTGTAGCCAT	NA	False	NA	4	True	AATAAA	-11	NA	35067829	35086852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375
ENSMUSG00000021413.10_76	chr13	+	2551	1	ISM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	28208	4	356	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATACCGTCTACTGGCAT	NA	False	NA	10	True	AATAAA	-15	NA	35087492	35090043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_35087500_35090000
ENSMUSG00000021416.12_0	chr13	-	1187	9	FSM	ENSMUSG00000021416.12	ENSMUST00000021853.12	1347	9	-21	181	-21	-181	multi-exon	TRUE	canonical	2	6	junction_1	1.69096865730859	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACAAAGCCTTATGAG	NA	False	NA	NA	False	AATAAA	-8	NA	35147814	35130777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_35131074_35132054_35132199_35132727_35132818_35136963_35137085_35138064_35138165_35140843_35140914_35143856_35144046_35144383_35144483_35147736
ENSMUSG00000021417.16_0	chr13	-	1546	10	FSM	ENSMUSG00000021417.16	ENSMUST00000021854.14	1746	10	197	3	38	-2	multi-exon	FALSE	canonical	3	47	junction_9	45.5959170795038	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGCCTTAAGAATTCATG	NA	False	NA	NA	False	AATAAA	-13	NA	35178067	35161734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177812
ENSMUSG00000021417.16_1	chr13	-	1395	10	FSM	ENSMUSG00000021417.16	ENSMUST00000110251.9	1395	10	7	-7	-2	0	multi-exon	FALSE	canonical	3	29	junction_9	51.0630208542878	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTAAGAATTCATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	35178108	35161732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177996
ENSMUSG00000021417.16_2	chr13	-	1672	10	NIC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	7	2	combination_of_known_junctions	FALSE	canonical	2	11	junction_9	56.5674512702303	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAAGCCTTAAGAATTC	NA	False	NA	NA	False	AATAAA	-10	NA	35178098	35161737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177812
ENSMUSG00000021417.16_3	chr13	-	1388	10	FSM	ENSMUSG00000021417.16	ENSMUST00000171229.8	1426	10	34	4	12	-2	multi-exon	FALSE	canonical	3	71	junction_9	38.39206450927	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGCCTTAAGAATTCATG	NA	False	NA	NA	False	AATAAA	-13	NA	35178093	35161734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177996
ENSMUSG00000021417.16_5	chr13	-	1461	10	NIC	ENSMUSG00000021417.16	novel	1414	10	NA	NA	39	0	combination_of_known_junctions	TRUE	canonical	3	26	junction_9	51.9781530555072	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTAAGAATTCATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	35178066	35161732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177996
ENSMUSG00000021417.16_8	chr13	-	1528	10	NIC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	43	2	combination_of_known_junctions	FALSE	canonical	3	23	junction_9	52.8942574306115	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAAGCCTTAAGAATTC	NA	False	NA	NA	False	AATAAA	-10	NA	35178062	35161737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177812
ENSMUSG00000021418.16_2	chr13	-	1130	8	FSM	ENSMUSG00000021418.16	ENSMUST00000171686.9	4380	8	15	3235	0	-3	multi-exon	FALSE	canonical	3	464	junction_5	45.6195446836425	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACACCTTGCTTGTTTGTT	NA	False	NA	-9	True	CATAAA	-20	NA	36090327	36080689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
ENSMUSG00000021420.14_0	chr13	+	1660	7	FSM	ENSMUSG00000021420.14	ENSMUST00000021857.13	2125	7	460	5	0	-2	multi-exon	FALSE	canonical	3	195	junction_1	25.2300526268883	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATTGACATAGCATTTG	NA	False	NA	4	True	AATAAA	-15	NA	36301854	36721562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_36301989_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUSG00000021420.14_1	chr13	+	1656	7	NIC	ENSMUSG00000021420.14	novel	2125	7	NA	NA	10	-2	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	85.194711625129	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATTGACATAGCATTTG	NA	False	NA	4	True	AATAAA	-15	NA	36301646	36721562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_36301777_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUSG00000021420.14_3	chr13	+	1737	8	FSM	ENSMUSG00000021420.14	ENSMUST00000224611.2	1750	8	4	9	-1	-2	multi-exon	FALSE	canonical	0	0	junction_2	107.637524751798	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATTGACATAGCATTTG	NA	False	NA	4	True	AATAAA	-15	NA	36301861	36721562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_36301989_36332343_36332428_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUSG00000021427.11_3	chr13	-	2485	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	52	6796	-8	-6796	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	1581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAGCTGTATAATCTGT	5898	False	NA	-45	True	AATATA	-16	NA	38178141	38162172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
ENSMUSG00000021427.11_7	chr13	-	1700	1	ISM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	14892	6225	14379	-6225	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACATTGTTTTCAGAATT	NA	False	NA	-3	True	AATATA	-14	NA	38163301	38161601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_38161600_38163300
ENSMUSG00000021428.10_1	chr13	+	2474	17	FSM	ENSMUSG00000021428.10	ENSMUST00000021866.10	2738	17	260	4	10	2	multi-exon	FALSE	canonical	3	187	junction_3	18.4889113727661	301	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGTAGTTTGCATTCTT	4748	False	NA	14	True	AATAAA	-15	NA	38221230	38245405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
ENSMUSG00000021431.16_0	chr13	+	4360	8	NIC	ENSMUSG00000021431.16	novel	1785	9	NA	NA	0	68	intron_retention	FALSE	canonical	3	101	junction_4	51.7734468228489	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGTCAAAATTGTACACT	NA	False	NA	4	True	AATAAA	-12	NA	38388920	38411024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38400300_38400490_38401349_38404753_38405210_38405370_38410849
ENSMUSG00000021431.16_19	chr13	+	3251	1	NIC	ENSMUSG00000021431.16	novel	6689	8	NA	NA	-3608	148	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAACAGCAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-41	NA	38396303	38399554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_38396300_38399600
ENSMUSG00000021431.16_2	chr13	+	1162	9	FSM	ENSMUSG00000021431.16	ENSMUST00000091641.13	1785	9	6	617	0	68	multi-exon	FALSE	canonical	1	67	junction_6	66.7082032062025	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGTCAAAATTGTACACT	NA	False	NA	4	True	AATAAA	-12	NA	38388926	38411024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38400300_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
ENSMUSG00000021431.16_22	chr13	+	2053	3	ISM	ENSMUSG00000021431.16	ENSMUST00000178564.2	847	9	14110	-129	-2058	71	3prime_fragment	FALSE	canonical	3	213	junction_2	17	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCAAAATTGTACACTACA	NA	False	NA	7	True	AATAAA	-15	NA	38403036	38411027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_38404753_38405210_38405370_38410849
ENSMUSG00000021431.16_3	chr13	+	2882	9	NIC	ENSMUSG00000021431.16	novel	6689	8	NA	NA	0	68	intron_retention	FALSE	canonical	1	67	junction_6	66.5450974903486	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGTCAAAATTGTACACT	NA	False	NA	4	True	AATAAA	-12	NA	38388926	38411024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
ENSMUSG00000021431.16_6	chr13	+	1406	5	ISM	ENSMUSG00000021431.16	ENSMUST00000223557.2	871	6	13	-152	0	152	intron_retention	FALSE	canonical	3	102	junction_4	60.6356949329353	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-45	NA	38388926	38399558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580
ENSMUSG00000021431.16_7	chr13	+	4869	4	FSM	ENSMUSG00000021431.16	ENSMUST00000223814.2	3740	4	12	-1141	0	152	multi-exon	FALSE	canonical	3	222	junction_2	12.8149218578274	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-45	NA	38388926	38399558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042
ENSMUSG00000021432.16_0	chr13	-	1571	9	FSM	ENSMUSG00000021432.16	ENSMUST00000224645.2	802	9	-33	-736	-3	-34	multi-exon	FALSE	canonical	3	22	junction_7	12.4473892845046	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATGTATTAATAAA	NA	False	NA	NA	False	AATAAA	-18	NA	39144516	39116149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139796_39139913_39144407
ENSMUSG00000021432.16_11	chr13	-	3357	8	NIC	ENSMUSG00000021432.16	novel	802	9	NA	NA	2	-40	intron_retention	FALSE	canonical	3	22	junction_6	13.1955465585777	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTTTAAAAAAAATGTATT	NA	False	NA	NA	False	AATAAA	-12	NA	39144487	39116155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139796_39139913_39144407
ENSMUSG00000021432.16_14	chr13	-	3418	8	NIC	ENSMUSG00000021432.16	novel	1701	10	NA	NA	1	-3	intron_retention	FALSE	canonical	3	39	junction_5	8.54280936441489	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGTGTTTTAATAGAAT	NA	False	NA	NA	False	AATAAA	-21	NA	39144504	39116283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139624_39139913_39144407
ENSMUSG00000021432.16_15	chr13	-	3692	9	NIC	ENSMUSG00000021432.16	novel	2216	10	NA	NA	0	-34	intron_retention	FALSE	canonical	3	16	junction_5	15.7950743904548	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATGTATTAATAAA	NA	False	NA	NA	False	AATAAA	-18	NA	39144489	39116149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144407
ENSMUSG00000021432.16_2	chr13	-	1710	9	NIC	ENSMUSG00000021432.16	novel	1778	10	NA	NA	26	-3	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	16.3205200591158	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAATCAAGGTGGGAAG	NA	False	NA	NA	False	AATAAA	-12	NA	39144430	39116118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139624_39139913_39144385
ENSMUSG00000021432.16_30	chr13	-	1750	10	FSM	ENSMUSG00000021432.16	ENSMUST00000167513.3	1778	10	25	3	3	-3	multi-exon	FALSE	canonical	2	5	junction_9	18.3127830951868	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGTGTTTTAATAGAAT	NA	False	NA	NA	False	AATAAA	-21	NA	39144480	39116283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144385
ENSMUSG00000021432.16_4	chr13	-	1887	10	FSM	ENSMUSG00000021432.16	ENSMUST00000225432.2	2216	10	294	35	-1	-35	multi-exon	FALSE	canonical	3	16	junction_6	14.9004929904357	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAATGTATTAATAA	NA	False	NA	NA	False	AATAAA	-17	NA	39144506	39116150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144407
ENSMUSG00000021432.16_8	chr13	-	1990	1	NIC	ENSMUSG00000021432.16	novel	2090	10	NA	NA	8989	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATGTATTAATAAA	NA	False	NA	NA	False	AATAAA	-18	NA	39118139	39116149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_39116100_39118100
ENSMUSG00000021432.16_9	chr13	-	1723	9	NIC	ENSMUSG00000021432.16	novel	2216	10	NA	NA	-7	-34	combination_of_known_junctions	FALSE	canonical	3	39	junction_6	8.40293847412915	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATGTATTAATAAA	NA	False	NA	NA	False	AATAAA	-18	NA	39144496	39116149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139624_39139913_39144407
ENSMUSG00000021451.17_11	chr13	-	4507	17	FSM	ENSMUSG00000021451.17	ENSMUST00000110040.9	4472	17	-38	3	36	1	multi-exon	FALSE	canonical	3	16	junction_15	57.0268234583516	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGGCCAGCCTTTGCC	NA	False	NA	-7	True	AATAAA	-17	NA	51947747	51855284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_51857568_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51888542_51888607_51917287_51917357_51947532
ENSMUSG00000021451.17_13	chr13	-	4268	15	NIC	ENSMUSG00000021451.17	novel	4415	15	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_14	49.7949366330123	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTGGGCCAGCCTTTGC	NA	False	NA	-8	True	AATAAA	-16	NA	51910702	51855285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_51857568_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51910592
ENSMUSG00000021451.17_6	chr13	-	4431	16	FSM	ENSMUSG00000021451.17	ENSMUST00000021900.14	4482	16	49	2	-25	-2	multi-exon	TRUE	canonical	3	95	junction_9	25.4317387005555	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGGCCAGCCTTTGCCT	NA	False	NA	-6	True	AATAAA	-18	NA	51947734	51855283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_51857568_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51917287_51917357_51947532
ENSMUSG00000021451.17_7	chr13	-	1800	1	ISM	ENSMUSG00000021451.17	ENSMUST00000110040.9	4472	17	90625	3	1923	1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGGCCAGCCTTTGCC	NA	False	NA	-7	True	AATAAA	-17	NA	51857084	51855284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_51855300_51857100
ENSMUSG00000021451.17_9	chr13	-	4368	15	NIC	ENSMUSG00000021451.17	novel	4482	16	NA	NA	-31	-2	combination_of_known_splicesites	FALSE	canonical	1	5	junction_14	50.6785085069578	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGGCCAGCCTTTGCCT	NA	False	NA	-6	True	AATAAA	-18	NA	51947740	51855283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_51857568_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51947532
ENSMUSG00000021453.3_0	chr13	+	1070	4	FSM	ENSMUSG00000021453.3	ENSMUST00000021903.3	1071	4	1	0	1	0	multi-exon	FALSE	canonical	3	52	junction_3	4.02768199119819	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAACTTAATGCCTTTT	NA	False	NA	NA	False	AATAAA	-8	NA	52000714	52002504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_52000869_52001387_52001490_52001591_52001806_52001904
ENSMUSG00000021453.3_1	chr13	+	1589	3	NIC	ENSMUSG00000021453.3	novel	1071	4	NA	NA	1	0	intron_retention	FALSE	canonical	3	52	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAACTTAATGCCTTTT	NA	False	NA	NA	False	AATAAA	-8	NA	52000714	52002504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_52001490_52001591_52001806_52001904
ENSMUSG00000021456.9_0	chr13	-	1319	7	FSM	ENSMUSG00000021456.9	ENSMUST00000021907.9	1354	7	27	8	27	-8	multi-exon	FALSE	canonical	3	121	junction_2	7.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGAATTCTTGTTATGG	NA	False	NA	-6	True	AATAAA	-12	NA	63006209	62984698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62985095_62988084_62988205_62989599_62989738_62997190_62997332_63001787_63001881_63002717_63002881_63005941
ENSMUSG00000021456.9_4	chr13	-	888	4	ISM	ENSMUSG00000021456.9	ENSMUST00000021907.9	1354	7	16	12288	16	4809	5prime_fragment	FALSE	canonical	3	131	junction_2	4.02768199119819	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTCAGATGTTTATCAT	NA	False	NA	NA	False	AGTAAA	-42	NA	63006220	62996978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_62997332_63001787_63001881_63002717_63002881_63005941
ENSMUSG00000021456.9_6	chr13	-	1038	6	ISM	ENSMUSG00000021456.9	ENSMUST00000021907.9	1354	7	3370	7	1257	-7	3prime_fragment	FALSE	canonical	3	121	junction_2	7.5736384915046	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAATTCTTGTTATGGG	706	False	NA	-5	True	AATAAA	-13	NA	63002866	62984697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_62985095_62988084_62988205_62989599_62989738_62997190_62997332_63001787_63001881_63002717
ENSMUSG00000021457.15_13	chr13	+	3892	14	NIC	ENSMUSG00000021457.15	novel	5363	14	NA	NA	-60	-1285	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	26.5171597897212	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACCATGAAGTTATTTTG	NA	False	NA	18	True	NA	NA	NA	52737412	52801533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_52737642_52750993_52751091_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
ENSMUSG00000021457.15_14	chr13	+	3456	12	NIC	ENSMUSG00000021457.15	novel	5363	14	NA	NA	13949	-1283	combination_of_known_junctions	FALSE	canonical	3	43	junction_5	14.599332034986	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATGAAGTTATTTTGTT	NA	False	NA	20	True	NA	NA	NA	52764943	52801535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
ENSMUSG00000021457.15_19	chr13	+	2289	5	ISM	ENSMUSG00000021457.15	ENSMUST00000055087.7	5122	14	41327	1283	41221	-1283	3prime_fragment	FALSE	canonical	3	54	junction_4	15.1904575309633	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATGAAGTTATTTTGTT	NA	False	NA	20	True	NA	NA	NA	52792215	52801535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
ENSMUSG00000021457.15_2	chr13	+	3727	13	NIC	ENSMUSG00000021457.15	novel	5363	14	NA	NA	12	-1281	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	14.4575528127458	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGAAGTTATTTTGTTGC	NA	False	NA	22	True	NA	NA	NA	52737484	52801537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
ENSMUSG00000021457.15_23	chr13	+	1889	2	ISM	ENSMUSG00000021457.15	ENSMUST00000055087.7	5122	14	46188	1283	46082	-1283	3prime_fragment	FALSE	canonical	3	54	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATGAAGTTATTTTGTT	NA	False	NA	20	True	NA	NA	NA	52797076	52801535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_52797189_52799758
ENSMUSG00000021457.15_24	chr13	+	1782	1	ISM	ENSMUSG00000021457.15	ENSMUST00000120135.8	5363	14	63824	14	50038	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAGTCTTGTGATGACCT	NA	False	NA	NA	False	AATAAA	-8	NA	52801032	52802814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_52801000_52802800
ENSMUSG00000021457.15_3	chr13	+	2412	13	ISM	ENSMUSG00000021457.15	ENSMUST00000120135.8	5363	14	258	5263	-6	-85	5prime_fragment	FALSE	canonical	3	17	junction_6	23.0487104965886	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGAGTTTGTGATCCCTGG	NA	False	NA	NA	False	NA	NA	NA	52737466	52797565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52778743_52778813_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075
ENSMUSG00000021457.15_4	chr13	+	3791	14	FSM	ENSMUSG00000021457.15	ENSMUST00000120135.8	5363	14	286	1286	22	-1276	multi-exon	FALSE	canonical	3	17	junction_6	22.2489943925403	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTATTTTGTTGCTACAT	NA	False	NA	27	True	NA	NA	NA	52737494	52801542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52778743_52778813_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
ENSMUSG00000021457.15_6	chr13	+	2390	12	NIC	ENSMUSG00000021457.15	novel	2519	13	NA	NA	22	-10	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	14.5124625838599	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGGATGAACAATCTCTG	NA	False	NA	NA	False	ATTAAA	-21	NA	52737494	52797640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075
ENSMUSG00000021457.15_7	chr13	+	3932	15	NIC	ENSMUSG00000021457.15	novel	5363	14	NA	NA	-6	-1260	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	29.2302610878744	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGTCACTGTAATTTTG	NA	False	NA	43	True	NA	NA	NA	52737466	52801558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_52737642_52750993_52751091_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52778743_52778813_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
ENSMUSG00000021458.18_13	chr13	+	1402	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220885.2	894	6	303	-242	-12	1	3prime_fragment	FALSE	canonical	3	17	junction_1	48.7769156466458	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTTTGCTTCTGAATTT	NA	False	NA	6	True	AATAAA	-20	NA	63420617	63450099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_63421164_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ENSMUSG00000021458.18_14	chr13	+	2033	5	FSM	ENSMUSG00000021458.18	ENSMUST00000223007.2	918	5	-454	-661	-12	-14	multi-exon	FALSE	canonical	2	25	junction_1	45.3231453012696	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCTTCCTGCTCTCAGAA	NA	False	NA	12	True	AATAAA	-12	NA	63420617	63450671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_63421223_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ENSMUSG00000021458.18_15	chr13	+	1760	4	FSM	ENSMUSG00000021458.18	ENSMUST00000223204.2	1754	4	-3	-3	-3	-1	multi-exon	FALSE	canonical	2	25	junction_1	47.8632310744781	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTGTGTAATGTTTATT	NA	False	NA	NA	False	ATTAAA	-34	NA	63420626	63447485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_63421223_63429955_63430073_63444671_63444759_63446525
ENSMUSG00000021458.18_23	chr13	+	1857	6	NIC	ENSMUSG00000021458.18	novel	918	5	NA	NA	-12	-11	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	57.1398284911672	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCTGCTCTCAGAAGCA	NA	False	NA	15	True	AATAAA	-15	NA	63420617	63450674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_63420920_63421039_63421164_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ENSMUSG00000021458.18_28	chr13	+	1015	1	FSM	ENSMUSG00000021458.18	ENSMUST00000221108.2	1599	1	1	583	1	4	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGCTTCTGAATTTGAT	NA	False	NA	9	True	AATAAA	-23	NA	63449087	63450102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_63449100_63450100
ENSMUSG00000021458.18_5	chr13	+	1348	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220884.2	772	7	-61	1561	2	-1	5prime_fragment	FALSE	canonical	3	67	junction_1	29.0387671914632	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTGTGTAATGTTTATT	NA	False	NA	NA	False	ATTAAA	-34	NA	63387860	63447485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525
ENSMUSG00000021458.18_6	chr13	+	1051	6	FSM	ENSMUSG00000021458.18	ENSMUST00000222929.2	1055	6	8	-4	5	2	multi-exon	FALSE	canonical	3	67	junction_1	29.9933325924279	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTTGCTTCTGAATTTG	NA	False	NA	7	True	AATAAA	-21	NA	63387850	63450100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ENSMUSG00000021460.18_0	chr13	-	1310	10	FSM	ENSMUSG00000021460.18	ENSMUST00000021913.16	1320	10	5	5	-2	-5	multi-exon	FALSE	canonical	3	269	junction_3	77.7090172246741	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTGAAGTTATACCA	NA	False	NA	-19	True	AATAAA	-17	NA	53083692	52989159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083490
ENSMUSG00000021460.18_29	chr13	-	2633	4	FSM	ENSMUSG00000021460.18	ENSMUST00000119311.8	2627	4	-6	0	1	0	multi-exon	FALSE	canonical	3	17	junction_1	210.944437128727	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGGCTGCTCTCTCA	NA	False	NA	-24	True	AATAAA	-17	NA	53083696	53061080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_53063352_53073036_53073125_53073234_53073303_53083490
ENSMUSG00000021460.18_3	chr13	-	1164	8	NIC	ENSMUSG00000021460.18	novel	1320	10	NA	NA	1	-5	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	139.021948054314	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTGAAGTTATACCA	NA	False	NA	-19	True	AATAAA	-17	NA	53083696	52989159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53052685_53052773_53073036_53073125_53073234_53073303_53083490
ENSMUSG00000021460.18_33	chr13	-	579	4	FSM	ENSMUSG00000021460.18	ENSMUST00000110031.4	3235	4	25	2631	-2	8	multi-exon	FALSE	canonical	3	117	junction_1	164.004742478855	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCAGTGTGGCGCTCATG	NA	False	NA	-2	True	AATAAA	-23	NA	53083692	53066876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_53067098_53073036_53073125_53073234_53073303_53083490
ENSMUSG00000021461.18_0	chr13	-	2509	15	FSM	ENSMUSG00000021461.18	ENSMUST00000161977.8	3111	15	5	597	3	-1	multi-exon	FALSE	canonical	3	59	junction_14	18.8014599954148	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGAGTCCTTGTCCTCC	NA	False	NA	-2	True	AGTAAA	-17	NA	63579533	63459949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63579263
ENSMUSG00000021461.18_3	chr13	-	2658	16	NNC	ENSMUSG00000021461.18	novel	2995	16	NA	NA	-13	1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_15	36.5910735927038	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGAGTCCTTGTCCTCCTG	NA	False	NA	0	True	AGTAAA	-19	NA	63579521	63459947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63553910_63554070_63579263
ENSMUSG00000021461.18_4	chr13	-	2532	15	NIC	ENSMUSG00000021461.18	novel	3111	15	NA	NA	-11	-3	combination_of_known_splicesites	FALSE	canonical	2	5	junction_14	30.5478046240141	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGTGAGTCCTTGTCCT	NA	False	NA	-4	True	AGTAAA	-15	NA	63579519	63459951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550892_63579263
ENSMUSG00000021461.18_6	chr13	-	2304	14	FSM	ENSMUSG00000021461.18	ENSMUST00000099444.10	2288	14	-11	-5	-11	5	multi-exon	TRUE	canonical	3	11	junction_13	30.2197082916227	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCCTTGTCCTCCTGCACT	NA	False	NA	4	True	AGTAAA	-23	NA	63579519	63459943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63579263
ENSMUSG00000021464.16_0	chr13	-	3963	9	FSM	ENSMUSG00000021464.16	ENSMUST00000021918.10	3985	9	15	7	15	-7	multi-exon	FALSE	canonical	3	114	junction_5	5.12195031213697	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAACTGTGTGTATTAT	NA	False	NA	-35	True	NA	NA	NA	53440145	53263359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_53265705_53267083_53267287_53271170_53271417_53272726_53273042_53275699_53275828_53284952_53284984_53285785_53286074_53300669_53300748_53439816
ENSMUSG00000021464.16_12	chr13	-	2653	3	ISM	ENSMUSG00000021464.16	ENSMUST00000130235.9	3730	9	168240	82	158349	-77	3prime_fragment	FALSE	canonical	3	122	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTAATTTATATGGTTT	NA	False	NA	-11	True	AAAAAG	-18	NA	53271345	53263429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_53265705_53267083_53267287_53271170
ENSMUSG00000021464.16_15	chr13	-	2973	4	ISM	ENSMUSG00000021464.16	ENSMUST00000130235.9	3730	9	166680	12	156789	-7	3prime_fragment	FALSE	canonical	3	122	junction_1	3.77123616632825	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAACTGTGTGTATTAT	NA	False	NA	-35	True	NA	NA	NA	53272905	53263359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_53265705_53267083_53267287_53271170_53271417_53272726
ENSMUSG00000021464.16_2	chr13	-	3750	9	NNC	ENSMUSG00000021464.16	novel	3730	9	NA	NA	115220	-7	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_8	35.4788669492136	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAACTGTGTGTATTAT	NA	False	NA	-35	True	NA	NA	NA	53314474	53263359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_53265705_53267083_53267287_53271170_53271417_53272726_53273042_53275699_53275828_53284952_53284984_53285785_53286074_53300669_53300748_53314358
ENSMUSG00000021464.16_3	chr13	-	1714	1	ISM	ENSMUSG00000021464.16	ENSMUST00000130235.9	3730	9	174517	7	164626	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGTGTATTATCTCTG	NA	False	NA	-30	True	NA	NA	NA	53265068	53263354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_53263400_53265100
ENSMUSG00000021464.16_9	chr13	-	3468	7	ISM	ENSMUSG00000021464.16	ENSMUST00000130235.9	3730	9	153597	15	143706	-10	3prime_fragment	FALSE	canonical	3	114	junction_5	5.5502752684489	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAATTTAACTGTGTGTAT	216	False	NA	-38	True	NA	NA	NA	53285988	53263362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_53265705_53267083_53267287_53271170_53271417_53272726_53273042_53275699_53275828_53284952_53284984_53285785
ENSMUSG00000021466.13_0	chr13	-	6808	23	NNC	ENSMUSG00000021466.13	novel	7002	24	NA	NA	716	0	intron_retention	FALSE	canonical	3	40	junction_22	16.0224532536208	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGCTTGTTTCTAGAAT	NA	False	NA	-2	True	AATAAA	-21	NA	63710913	63656143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082_63668221_63670813_63671095_63672758_63672943_63674960_63675104_63680350_63680661_63681077_63681481_63682103_63682223_63687046_63687173_63687627_63687727_63688495_63688652_63688970_63689103_63689978_63690127_63690897_63691020_63691303_63691503_63692849_63692942_63693050_63693121_63695809_63696000_63710842
ENSMUSG00000021466.13_1	chr13	-	4160	7	ISM	ENSMUSG00000021466.13	ENSMUST00000192155.6	7002	24	41340	-7	-11166	0	3prime_fragment	FALSE	canonical	3	79	junction_3	10.1598337694188	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCTTGTTTCTAGAATG	NA	False	NA	-1	True	AATAAA	-22	NA	63671009	63656142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082_63668221_63670813
ENSMUSG00000021466.13_10	chr13	-	7559	24	FSM	ENSMUSG00000021466.13	ENSMUST00000192155.6	7002	24	-550	-7	189	0	multi-exon	FALSE	canonical	2	4	junction_23	22.4059470906355	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCTTGTTTCTAGAATG	NA	False	NA	-1	True	AATAAA	-22	NA	63712899	63656142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082_63668221_63670813_63671095_63672758_63672943_63674960_63675104_63680350_63680661_63681077_63681481_63682103_63682223_63687046_63687173_63687627_63687727_63688495_63688652_63688970_63689103_63689978_63690127_63690897_63691020_63691303_63691503_63692849_63692942_63693050_63693121_63695809_63696000_63711436_63711630_63712271
ENSMUSG00000021466.13_12	chr13	-	7736	24	NIC	ENSMUSG00000021466.13	novel	7002	24	NA	NA	-431	0	intron_retention	FALSE	canonical	3	23	junction_23	19.6234881059468	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCTTGTTTCTAGAATG	NA	False	NA	-1	True	AATAAA	-22	NA	63713980	63656142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082_63668221_63670813_63671095_63672758_63672943_63674960_63675104_63680350_63680661_63681077_63681481_63682103_63682223_63687046_63687173_63687627_63687727_63688495_63688652_63688970_63689103_63689978_63690127_63690897_63691020_63691303_63691503_63692849_63692942_63693050_63693121_63695809_63696000_63711436_63711630_63713175
ENSMUSG00000021466.13_15	chr13	-	2010	1	ISM	ENSMUSG00000021466.13	ENSMUST00000021921.11	7725	23	55396	2	1690	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGCTTGTTTCTAGAAT	NA	False	NA	-2	True	AATAAA	-21	NA	63658153	63656143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_63656100_63658200
ENSMUSG00000021466.13_2	chr13	-	5248	11	ISM	ENSMUSG00000021466.13	ENSMUST00000192155.6	7002	24	30906	-7	6049	0	3prime_fragment	FALSE	canonical	3	67	junction_8	14.2070405081424	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCTTGTTTCTAGAATG	NA	False	NA	-1	True	AATAAA	-22	NA	63681443	63656142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082_63668221_63670813_63671095_63672758_63672943_63674960_63675104_63680350_63680661_63681077
ENSMUSG00000021466.13_20	chr13	-	3805	5	ISM	ENSMUSG00000021466.13	ENSMUST00000192155.6	7002	24	46302	-7	-6204	0	3prime_fragment	FALSE	canonical	3	79	junction_3	8.64580823289529	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCTTGTTTCTAGAATG	NA	False	NA	-1	True	AATAAA	-22	NA	63666047	63656142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925
ENSMUSG00000021466.13_24	chr13	-	6983	23	ISM	ENSMUSG00000021466.13	ENSMUST00000192155.6	7002	24	668	-7	-52	0	3prime_fragment	FALSE	canonical	3	49	junction_22	14.8897463193483	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCTTGTTTCTAGAATG	NA	False	NA	-1	True	AATAAA	-22	NA	63711681	63656142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082_63668221_63670813_63671095_63672758_63672943_63674960_63675104_63680350_63680661_63681077_63681481_63682103_63682223_63687046_63687173_63687627_63687727_63688495_63688652_63688970_63689103_63689978_63690127_63690897_63691020_63691303_63691503_63692849_63692942_63693050_63693121_63695809_63696000_63711436
ENSMUSG00000021466.13_4	chr13	-	2915	2	ISM	ENSMUSG00000021466.13	ENSMUST00000195258.7	10383	22	52152	0	366	0	3prime_fragment	FALSE	canonical	3	93	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGCTTGTTTCTAGAAT	NA	False	NA	-2	True	AATAAA	-21	NA	63659477	63656143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_63658927_63659345
ENSMUSG00000021466.13_5	chr13	-	3462	3	ISM	ENSMUSG00000021466.13	ENSMUST00000195258.7	10383	22	50121	-1	-1665	0	3prime_fragment	FALSE	canonical	3	93	junction_1	5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCTTGTTTCTAGAATG	NA	False	NA	-1	True	AATAAA	-22	NA	63661508	63656142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_63658927_63659345_63659890_63661374
ENSMUSG00000021466.13_7	chr13	-	6121	18	ISM	ENSMUSG00000021466.13	ENSMUST00000192155.6	7002	24	21396	-7	2177	0	3prime_fragment	TRUE	canonical	3	67	junction_8	12.3918155822949	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCTTGTTTCTAGAATG	NA	False	NA	-1	True	AATAAA	-22	NA	63690953	63656142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082_63668221_63670813_63671095_63672758_63672943_63674960_63675104_63680350_63680661_63681077_63681481_63682103_63682223_63687046_63687173_63687627_63687727_63688495_63688652_63688970_63689103_63689978_63690127_63690897
ENSMUSG00000021466.13_9	chr13	-	3927	6	ISM	ENSMUSG00000021466.13	ENSMUST00000192155.6	7002	24	44166	-7	-8340	0	3prime_fragment	FALSE	canonical	3	79	junction_3	9.91160935469109	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCTTGTTTCTAGAATG	NA	False	NA	-1	True	AATAAA	-22	NA	63668183	63656142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082
ENSMUSG00000021468.9_18	chr13	-	2571	3	ISM	ENSMUSG00000021468.9	ENSMUST00000021920.8	2606	15	38510	13	38461	-13	3prime_fragment	FALSE	canonical	3	189	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTCCTGAAAAGGAGTCT	NA	False	NA	-31	True	AATAAA	-14	NA	53492923	53486796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_53488014_53489376_53489451_53491643
ENSMUSG00000021468.9_4	chr13	-	2559	15	FSM	ENSMUSG00000021468.9	ENSMUST00000021920.8	2606	15	34	13	2	-13	multi-exon	FALSE	canonical	3	146	junction_11	13.0690864412232	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTCCTGAAAAGGAGTCT	1863	False	NA	-31	True	AATAAA	-14	NA	53531399	53486796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_53488014_53489376_53489451_53491643_53491762_53496207_53496263_53497163_53497261_53497814_53497911_53498836_53498945_53505636_53505727_53508186_53508317_53512796_53512930_53521347_53521421_53521901_53521996_53527364_53527460_53527997_53528106_53531328
ENSMUSG00000021469.10_0	chr13	-	2215	2	FSM	ENSMUSG00000021469.10	ENSMUST00000021922.10	2453	2	238	0	238	0	multi-exon	FALSE	canonical	3	8	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGTCTGTCCCAACTC	NA	False	NA	NA	False	ATTAAA	-18	NA	53626872	53620919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_53622630_53626367
ENSMUSG00000021470.20_0	chr13	+	5552	19	FSM	ENSMUSG00000021470.20	ENSMUST00000238465.2	4614	19	-147	-791	-6	-8	multi-exon	FALSE	canonical	3	68	junction_14	17.5231768921923	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAAACCTCTTTCATCG	NA	False	NA	1	True	AATAAA	-12	NA	63963141	64048108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_63963332_63967444_63967870_63972622_63972743_63982409_63982604_63989237_63989400_63989775_63989984_63992359_63992501_63995154_63995269_63996554_63996675_64000764_64000837_64001441_64001588_64006044_64006141_64013771_64013872_64016839_64016993_64018502_64018584_64019609_64020742_64025192_64025348_64042451_64042634_64046347
ENSMUSG00000021470.20_1	chr13	+	1927	11	ISM	ENSMUSG00000021470.20	ENSMUST00000067821.13	2743	14	21	15851	-10	-6	5prime_fragment	TRUE	canonical	3	89	junction_9	12.0979337078693	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCATCTGGTTGTTTTCT	NA	False	NA	2	True	AATAAA	-18	NA	63963137	64001618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_63963332_63967444_63967870_63972622_63972743_63982409_63982604_63989237_63989400_63989775_63989984_63992359_63992501_63995154_63995269_63996554_63996675_64000764_64000837_64001441
ENSMUSG00000021470.20_38	chr13	+	2667	4	ISM	ENSMUSG00000021470.20	ENSMUST00000095724.11	5879	19	57062	3	1855	-3	3prime_fragment	FALSE	canonical	3	92	junction_3	11.2644968324772	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTCTTTCATCGAATTT	NA	False	NA	6	True	AATAAA	-17	NA	64020177	64048113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_64020742_64025192_64025348_64042451_64042634_64046347
ENSMUSG00000021470.20_39	chr13	+	871	1	ISM	ENSMUSG00000021470.20	ENSMUST00000095724.11	5879	19	84125	5	5400	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACCTCTTTCATCGAAT	NA	False	NA	4	True	AATAAA	-15	NA	64047240	64048111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_64047200_64048100
ENSMUSG00000021474.10_0	chr13	+	2771	11	FSM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	2	10	2	-10	multi-exon	FALSE	canonical	3	779	junction_1	55.358919787149	1492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATGAAAACAAACTGTCT	NA	False	NA	NA	False	AATAAA	-8	NA	54225889	54262351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUSG00000021474.10_1	chr13	+	2765	11	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	1	-10	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	264.208800004845	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATGAAAACAAACTGTCT	NA	False	NA	NA	False	AATAAA	-8	NA	54225888	54262351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_54225945_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUSG00000021474.10_42	chr13	+	2710	10	ISM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	13579	10	-498	-10	3prime_fragment	FALSE	canonical	3	858	junction_8	32.8299020579685	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATGAAAACAAACTGTCT	NA	False	NA	NA	False	AATAAA	-8	NA	54239466	54262351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUSG00000021476.10_0	chr13	+	2546	8	FSM	ENSMUSG00000021476.10	ENSMUST00000021929.10	2564	8	10	8	10	-8	multi-exon	FALSE	canonical	3	140	junction_6	9.99183340002612	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGTATGACTGCCTTAT	NA	False	NA	NA	False	ATTAAA	-11	NA	64309692	64334343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_64310149_64317827_64317991_64321876_64322036_64322603_64322673_64323818_64323903_64329920_64330093_64332386_64332573_64333086
ENSMUSG00000021476.10_4	chr13	+	4840	7	FSM	ENSMUSG00000021476.10	ENSMUST00000221904.2	4903	7	55	8	10	-8	multi-exon	FALSE	canonical	3	144	junction_5	8.22090830342568	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGTATGACTGCCTTAT	NA	False	NA	NA	False	ATTAAA	-11	NA	64309692	64334343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_64310149_64317827_64317991_64321876_64322036_64322603_64322673_64323818_64323903_64329920_64332573_64333086
ENSMUSG00000021476.10_6	chr13	+	1293	2	FSM	ENSMUSG00000021476.10	ENSMUST00000221264.2	471	2	-367	-455	10	455	multi-exon	FALSE	canonical	3	21	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAACCCAGGGTTTTATT	NA	False	NA	NA	False	AATAAA	-16	NA	64309692	64311887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_64310149_64311050
ENSMUSG00000021477.10_2	chr13	-	196	1	ISM	ENSMUSG00000021477.10	ENSMUST00000222517.2	6168	9	8843	2515	5008	1362	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	64509861	64509665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_64509700_64509900
ENSMUSG00000021477.10_3	chr13	-	1385	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	2	584	2	-584	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGGGACTTCAGTGTGT	NA	False	NA	-8	True	AATAAA	-20	NA	64518118	64511611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
ENSMUSG00000021481.12_0	chr13	+	3335	7	FSM	ENSMUSG00000021481.12	ENSMUST00000021937.12	3333	7	-2	0	-2	0	multi-exon	FALSE	canonical	3	43	junction_4	9.82202739877171	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATCCGATGTGTGCGCT	17	False	NA	11	True	NA	NA	NA	55253137	55282638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55263292_55263438_55270142_55270329_55278346_55278441_55280119
ENSMUSG00000021481.12_1	chr13	+	3394	7	NIC	ENSMUSG00000021481.12	novel	3333	7	NA	NA	2	2	intron_retention	FALSE	canonical	3	20	junction_4	17.8013732304249	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCCGATGTGTGCGCTCT	8	False	NA	13	True	NA	NA	NA	55253128	55282640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_55253332_55260848_55260953_55261490_55261584_55263292_55263438_55270094_55270329_55278346_55278441_55280119
ENSMUSG00000021481.12_16	chr13	+	3424	3	FSM	ENSMUSG00000021481.12	ENSMUST00000160310.2	644	3	-307	-2473	-307	4	multi-exon	FALSE	canonical	3	60	junction_1	7.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGATGTGTGCGCTCTTC	4320	False	NA	15	True	NA	NA	NA	55269521	55282642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55270329_55278346_55278441_55280119
ENSMUSG00000021481.12_19	chr13	+	2120	1	ISM	ENSMUSG00000021481.12	ENSMUST00000021937.12	3333	7	27379	0	2482	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATCCGATGTGTGCGCT	7572	False	NA	11	True	NA	NA	NA	55280518	55282638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_55280500_55282600
ENSMUSG00000021481.12_3	chr13	+	3192	6	FSM	ENSMUSG00000021481.12	ENSMUST00000162476.8	1112	6	-7	-2073	-1	3	multi-exon	FALSE	canonical	2	4	junction_3	25.663982543635	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCGATGTGTGCGCTCTT	18	False	NA	14	True	NA	NA	NA	55253138	55282641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55270142_55270329_55278346_55278441_55280119
ENSMUSG00000021482.11_1	chr13	-	2980	6	FSM	ENSMUSG00000021482.11	ENSMUST00000222570.2	3011	6	1	30	1	-9	multi-exon	TRUE	canonical	3	150	junction_1	21.3672646822189	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAAAATTAAAATTTTT	NA	False	NA	-30	True	AATAAA	-18	NA	64460523	64437640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_64440043_64445068_64445201_64456635_64456742_64456906_64456961_64460080_64460150_64460306
ENSMUSG00000021482.11_3	chr13	-	1646	1	ISM	ENSMUSG00000021482.11	ENSMUST00000222570.2	3011	6	21236	32	-11750	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAATTTAAAATTAAAATTT	NA	False	NA	-32	True	AATAAA	-16	NA	64439288	64437642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_64437600_64439300
ENSMUSG00000021482.11_5	chr13	-	2932	5	FSM	ENSMUSG00000021482.11	ENSMUST00000021938.11	791	5	-136	-2005	0	-4	multi-exon	FALSE	canonical	2	5	junction_3	76.095334942426	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAAAATTTTTTGTTT	NA	False	NA	-25	True	AATAAA	-23	NA	64460524	64437635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_64440043_64445068_64445201_64456635_64456742_64460080_64460150_64460306
ENSMUSG00000021483.9_0	chr13	+	1875	8	FSM	ENSMUSG00000021483.9	ENSMUST00000021939.8	4118	8	188	2055	-40	-2	multi-exon	TRUE	canonical	3	37	junction_1	3.65892813567591	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCAGCTTGTGTTTTAT	NA	False	NA	13	True	AATAAA	-13	NA	64580315	64587532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_64580485_64580790_64580905_64583931_64584121_64584306_64584429_64584579_64584643_64585202_64585327_64585690_64585847_64586594
ENSMUSG00000021483.9_1	chr13	+	2720	6	NIC	ENSMUSG00000021483.9	novel	4118	8	NA	NA	11	-4	intron_retention	TRUE	canonical	3	37	junction_1	3.72021504754765	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGCCAGCTTGTGTTTT	NA	False	NA	11	True	AATAAA	-11	NA	64580179	64587530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_64580485_64580790_64580905_64583931_64584121_64584306_64585327_64585690_64585847_64586594
ENSMUSG00000021483.9_7	chr13	+	1822	7	ISM	ENSMUSG00000021483.9	ENSMUST00000222562.2	1107	8	-121	-492	-121	-4	intron_retention	FALSE	canonical	3	38	junction_3	3.43592135468138	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGCCAGCTTGTGTTTT	NA	False	NA	11	True	AATAAA	-11	NA	64580672	64587530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_64580905_64583931_64584121_64584306_64584429_64584579_64584643_64585202_64585327_64585690_64585847_64586594
ENSMUSG00000021484.9_3	chr13	-	1231	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	171	2913	-1	-153	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	2124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGCTTCTTGCCCAGCT	3010	False	NA	-7	True	ATTAAA	-13	NA	55510425	55494558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
ENSMUSG00000021485.15_1	chr13	-	1024	6	FSM	ENSMUSG00000021485.15	ENSMUST00000021941.8	1327	6	-10	313	-10	1	multi-exon	FALSE	canonical	3	87	junction_2	5.62138772902208	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCCTGTCCATGGTTTT	6145	False	NA	-2	True	ATTAAA	-13	NA	55477581	55473293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55473712_55473825_55474010_55476182_55476298_55476426_55476457_55477081_55477188_55477410
ENSMUSG00000021485.15_11	chr13	-	983	5	NIC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	1	1	combination_of_known_splicesites	FALSE	canonical	1	4	junction_3	39.2006058626649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCCTGTCCATGGTTTT	6156	False	NA	-2	True	ATTAAA	-13	NA	55477570	55473293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_55473712_55473825_55474010_55476182_55476298_55477081_55477188_55477410
ENSMUSG00000021485.15_16	chr13	-	361	1	ISM	ENSMUSG00000021485.15	ENSMUST00000021941.8	1327	6	4223	7	3817	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCTTGGAGCGTACAGTC	9445	False	NA	-14	True	NA	NA	NA	55473348	55472987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_55473000_55473300
ENSMUSG00000021485.15_4	chr13	-	1759	4	FSM	ENSMUSG00000021485.15	ENSMUST00000146181.8	1742	4	-16	-1	9	1	multi-exon	FALSE	canonical	3	87	junction_2	6.23609564462324	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCCTGTCCATGGTTTT	6164	False	NA	-2	True	ATTAAA	-13	NA	55477562	55473293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55473712_55473825_55474010_55476182_55477188_55477410
ENSMUSG00000021485.15_8	chr13	-	1120	5	NIC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	-2	1	intron_retention	FALSE	canonical	3	87	junction_2	5.87367006223537	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCCTGTCCATGGTTTT	6178	False	NA	-2	True	ATTAAA	-13	NA	55477548	55473293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_55473712_55473825_55474010_55476182_55476457_55477081_55477188_55477410
ENSMUSG00000021486.8_0	chr13	+	1108	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	1535	1	16	-1	multi-exon	FALSE	canonical	3	1299	junction_2	62.1248742453456	691	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCTGGAGTCAGATAGCT	5569	False	NA	17	True	NA	NA	NA	55469847	55473084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
ENSMUSG00000021488.9_124	chr13	+	3869	1	ISM	ENSMUSG00000021488.9	ENSMUST00000099490.3	12784	23	104674	1	23488	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCCTTGCCCTGTGTTT	NA	False	NA	14	True	AGTAAA	-17	NA	55462268	55466137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_55462300_55466100
ENSMUSG00000021488.9_2	chr13	+	7730	24	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	0	-1741	combination_of_known_junctions	FALSE	canonical	3	116	junction_1	35.0361951650663	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATGGAATTCGATTCCA	NA	False	NA	21	True	AATAAA	-18	NA	55357594	55461827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
ENSMUSG00000021488.9_41	chr13	+	7816	24	NIC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	-2	-1745	combination_of_known_junctions	FALSE	canonical	3	116	junction_1	35.0361951650663	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAAGAATGGAATTCGAT	NA	False	NA	17	True	AATAAA	-14	NA	55359629	55461823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
ENSMUSG00000021488.9_90	chr13	+	5508	19	ISM	ENSMUSG00000021488.9	ENSMUST00000224973.2	9905	21	37347	1745	-16296	-1745	3prime_fragment	FALSE	canonical	3	160	junction_18	24.9002950054417	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAAGAATGGAATTCGAT	NA	False	NA	17	True	AATAAA	-14	NA	55394941	55461823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
ENSMUSG00000021493.16_0	chr13	-	1684	13	FSM	ENSMUSG00000021493.16	ENSMUST00000046246.13	1697	13	14	-1	2	1	multi-exon	FALSE	canonical	3	56	junction_4	33.4015967682185	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTCTGTGCCTCCCCGCT	NA	False	NA	-6	True	AATAAA	-16	NA	55661245	55646227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55646548_55646706_55646823_55646913_55647035_55652470_55652652_55653746_55653982_55654118_55654181_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ENSMUSG00000021493.16_15	chr13	-	1003	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	2	1	1	0	multi-exon	FALSE	canonical	3	62	junction_1	27.1751687376246	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGCCTCTGTCTCCC	NA	False	NA	-3	True	AATAAA	-16	NA	55661249	55654586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ENSMUSG00000021494.10_1	chr13	-	2070	17	FSM	ENSMUSG00000021494.10	ENSMUST00000224765.2	2199	17	128	1	-9	-1	multi-exon	FALSE	canonical	3	642	junction_9	44.9861089671023	1037	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTTCTTCCTCTCTCAC	NA	False	NA	-6	True	ATTAAA	-20	NA	55684343	55678229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
ENSMUSG00000021495.11_1	chr13	-	3301	5	FSM	ENSMUSG00000021495.11	ENSMUST00000224486.2	4786	5	1487	-2	1487	-1	multi-exon	FALSE	canonical	3	92	junction_4	31.8943568676341	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAGTATGATGGTGATTT	NA	False	NA	-5	True	GATAAA	-18	NA	55698655	55687129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55696930
ENSMUSG00000021495.11_11	chr13	-	5160	10	NIC	ENSMUSG00000021495.11	novel	4341	11	NA	NA	24	0	intron_retention	FALSE	canonical	3	48	junction_8	45.9511280910437	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTAGTATGATGGTGAT	NA	False	NA	-7	True	GATAAA	-16	NA	55718889	55687131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55696930_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55712332_55712394_55717517
ENSMUSG00000021495.11_13	chr13	-	4292	11	FSM	ENSMUSG00000021495.11	ENSMUST00000021957.8	4341	11	44	5	24	-2	multi-exon	FALSE	canonical	3	48	junction_9	46.3227805728456	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTAGTATGATGGTG	NA	False	NA	-9	True	GATAAA	-14	NA	55718889	55687133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55696930_55697171_55698036_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55712332_55712394_55717517
ENSMUSG00000021495.11_16	chr13	-	1874	5	NIC	ENSMUSG00000021495.11	novel	2950	9	NA	NA	24	-2	combination_of_known_splicesites	FALSE	canonical	3	20	junction_4	62.8589691293136	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTAGTATGATGGTG	NA	False	NA	-9	True	GATAAA	-14	NA	55718889	55687133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55718587
ENSMUSG00000021495.11_35	chr13	-	1379	4	ISM	ENSMUSG00000021495.11	ENSMUST00000224486.2	4786	5	8731	4	-131	-4	3prime_fragment	FALSE	canonical	3	159	junction_3	6.0184900284226	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGAGTTAGTATGATGG	NA	False	NA	-11	True	GATAAA	-12	NA	55691411	55687135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596
ENSMUSG00000021495.11_43	chr13	-	184	1	ISM	ENSMUSG00000021495.11	ENSMUST00000225703.2	1234	3	3820	1	3429	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAGTATGATGGTGATTT	NA	False	NA	-5	True	GATAAA	-18	NA	55687313	55687129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_55687100_55687300
ENSMUSG00000021495.11_7	chr13	-	4334	12	NNC	ENSMUSG00000021495.11	novel	4341	11	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	51.3880070904416	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTAGTATGATGGTGAT	NA	False	NA	-7	True	GATAAA	-16	NA	55718883	55687131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55696930_55697171_55697774_55697821_55698036_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55712332_55712394_55717517
ENSMUSG00000021495.11_9	chr13	-	3161	10	NIC	ENSMUSG00000021495.11	novel	4341	11	NA	NA	24	-2	combination_of_known_junctions	FALSE	canonical	3	32	junction_9	48.4171686720963	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTAGTATGATGGTG	NA	False	NA	-9	True	GATAAA	-14	NA	55718889	55687133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55696930_55697171_55698036_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55718587
ENSMUSG00000021496.13_0	chr13	+	548	4	FSM	ENSMUSG00000021496.13	ENSMUST00000021958.6	544	4	-4	0	-4	0	multi-exon	FALSE	canonical	3	322	junction_3	31.7210060089875	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGAGTTATTTGTCAT	NA	False	NA	13	True	AATACA	-16	NA	55875176	55924641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55875288_55880748_55880881_55923179_55923261_55924417
ENSMUSG00000021496.13_1	chr13	+	356	3	NNC	ENSMUSG00000021496.13	novel	544	4	NA	NA	-4	-36260	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	178.5	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAATTTCACATTTGTA	NA	False	NA	20	True	ATTAAA	-26	NA	55875176	55888381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_55875288_55880748_55880881_55888268
ENSMUSG00000021496.13_3	chr13	+	362	3	NIC	ENSMUSG00000021496.13	novel	544	4	NA	NA	-9	-59	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	152	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTTACATGTATACATTG	NA	False	NA	-46	True	AATAAA	-18	NA	55875171	55924582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_55875288_55923179_55923261_55924417
ENSMUSG00000021497.11_0	chr13	+	1454	5	FSM	ENSMUSG00000021497.11	ENSMUST00000021959.11	1527	5	67	6	67	-6	multi-exon	FALSE	canonical	3	237	junction_2	13.4257215820976	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATTCAAAGTGGTTTC	NA	False	NA	12	True	AATAAA	-8	NA	55862529	55874034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55862658_55865604_55866081_55869391_55869556_55872320_55872452_55873479
ENSMUSG00000021497.11_1	chr13	+	1461	5	NNC	ENSMUSG00000021497.11	novel	1527	5	NA	NA	54	-6	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	106.534912118047	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATTCAAAGTGGTTTC	NA	False	NA	12	True	AATAAA	-8	NA	55862516	55874034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_55862658_55865610_55866081_55869391_55869556_55872320_55872452_55873479
ENSMUSG00000021497.11_4	chr13	+	1162	4	ISM	ENSMUSG00000021497.11	ENSMUST00000021959.11	1527	5	3306	6	117	-6	3prime_fragment	FALSE	canonical	3	237	junction_1	14.4299072146089	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATTCAAAGTGGTTTC	NA	False	NA	12	True	AATAAA	-8	NA	55865768	55874034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_55866081_55869391_55869556_55872320_55872452_55873479
ENSMUSG00000021500.18_2	chr13	+	3550	23	FSM	ENSMUSG00000021500.18	ENSMUST00000172272.8	5676	23	-11	2137	-11	-2137	multi-exon	FALSE	non_canonical	0	0	junction_19	81.8265778520354	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGACCTGTCCTTTCAGT	NA	False	NA	12	True	AATAAA	-21	NA	55782828	55826932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821931_55823708_55823928_55824582_55824728_55825333_55825408_55826596
ENSMUSG00000021500.18_6	chr13	+	3569	23	NIC	ENSMUSG00000021500.18	novel	5676	23	NA	NA	-11	-2115	intron_retention	FALSE	canonical	3	86	junction_19	66.2512279630466	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTGGTGTGCTCATCAC	NA	False	NA	34	True	AATAAA	-43	NA	55782828	55826954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821928_55823708_55823928_55824582_55824728_55825333_55825408_55826596
ENSMUSG00000021501.5_1	chr13	+	1368	4	FSM	ENSMUSG00000021501.5	ENSMUST00000021963.5	1382	4	13	1	13	-1	multi-exon	FALSE	canonical	3	82	junction_2	4.49691252107735	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAATAGAAGTCTGTACAT	NA	False	NA	NA	False	AATAAA	-20	NA	55770830	55780223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55771070_55772523_55772985_55776389_55776456_55779621
ENSMUSG00000021501.5_3	chr13	+	1296	3	NIC	ENSMUSG00000021501.5	novel	1382	4	NA	NA	11	-9	combination_of_known_splicesites	FALSE	canonical	2	2	junction_2	42.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGATTGACTAATAGAAGT	NA	False	NA	NA	False	AATAAA	-12	NA	55770828	55780215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_55771070_55772523_55772985_55779621
ENSMUSG00000021501.5_6	chr13	+	965	3	ISM	ENSMUSG00000021501.5	ENSMUST00000021963.5	1382	4	1864	7	1671	-7	3prime_fragment	FALSE	canonical	3	82	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTGACTAATAGAAGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	55772681	55780217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_55772985_55776389_55776456_55779621
ENSMUSG00000021504.15_0	chr13	+	2119	6	FSM	ENSMUSG00000021504.15	ENSMUST00000064701.8	2130	6	8	3	8	-3	multi-exon	FALSE	canonical	3	87	junction_4	8.85437744847146	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATACACTGGCAAGGAAC	NA	False	NA	2	True	AATAAA	-15	NA	55747885	55758252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55748006_55751832_55752196_55755009_55755236_55756154_55756239_55756510_55756616_55757031
ENSMUSG00000021504.15_1	chr13	+	3054	5	NIC	ENSMUSG00000021504.15	novel	2130	6	NA	NA	-5	0	intron_retention	FALSE	canonical	3	87	junction_3	9.49670995661129	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACTGGCAAGGAACTGG	NA	False	NA	5	True	AATAAA	-18	NA	55747872	55758255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_55748006_55751832_55752196_55755009_55756239_55756510_55756616_55757031
ENSMUSG00000021504.15_15	chr13	+	1220	1	ISM	ENSMUSG00000021504.15	ENSMUST00000100764.10	2195	5	9323	5	9154	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTATACACTGGCAAGGAA	NA	False	NA	1	True	AATAAA	-14	NA	55757031	55758251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_55757000_55758300
ENSMUSG00000021504.15_2	chr13	+	2017	6	NIC	ENSMUSG00000021504.15	novel	2130	6	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	32.2391066873758	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACTGGCAAGGAACTGG	NA	False	NA	5	True	AATAAA	-18	NA	55747890	55758255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_55748006_55751932_55752196_55755009_55755236_55756154_55756239_55756510_55756616_55757031
ENSMUSG00000021504.15_3	chr13	+	2930	5	NIC	ENSMUSG00000021504.15	novel	2130	6	NA	NA	15	-4	intron_retention	FALSE	canonical	3	17	junction_1	35.4356811702555	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTATACACTGGCAAGGAA	NA	False	NA	1	True	AATAAA	-14	NA	55747892	55758251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_55748006_55751932_55752196_55755009_55756239_55756510_55756616_55757031
ENSMUSG00000021506.8_0	chr13	-	2282	3	FSM	ENSMUSG00000021506.8	ENSMUST00000021968.7	2451	3	164	5	164	-5	multi-exon	FALSE	canonical	2	5	junction_1	0.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACCACTGAGCCCTAGC	NA	False	NA	NA	False	ATTAAA	-20	NA	55979074	55972868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55974425_55976252_55976489_55978584
ENSMUSG00000021508.12_0	chr13	-	1656	4	FSM	ENSMUSG00000021508.12	ENSMUST00000021970.11	1827	4	164	7	-82	-7	multi-exon	FALSE	canonical	3	62	junction_2	5.8878405775519	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAAATTCTGTACTCCTG	NA	False	NA	-5	True	AATAAA	-15	NA	56444200	56436462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_56437621_56440273_56440388_56443638_56443745_56443922
ENSMUSG00000021508.12_2	chr13	-	4287	3	NIC	ENSMUSG00000021508.12	novel	1827	4	NA	NA	-57	-4	intron_retention	FALSE	canonical	3	62	junction_1	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTCTGTACTCCTGGGC	NA	False	NA	-2	True	AATAAA	-18	NA	56444175	56436459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_56440388_56443638_56443745_56443922
ENSMUSG00000021509.6_0	chr13	+	2116	9	NNC	ENSMUSG00000021509.6	novel	3374	8	NA	NA	-570	-2505	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	5.67340285895511	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTCTTGGTGAAGCGTC	NA	False	NA	NA	False	AATAAA	-30	NA	56585597	56619547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_56585844_56585944_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56618964
ENSMUSG00000021509.6_3	chr13	+	3715	10	NNC	ENSMUSG00000021509.6	novel	3374	8	NA	NA	-568	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	7.67390962214756	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAGTGTGACGTCGTGC	NA	False	NA	24	True	AATAAA	-14	NA	56585599	56622040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_56585844_56585944_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56619742_56620237_56620350
ENSMUSG00000021509.6_5	chr13	+	1812	8	NNC	ENSMUSG00000021509.6	novel	3374	8	NA	NA	1	-2339	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_7	4.23300925429402	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAATCAATGTGTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	56586168	56619713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56618964
ENSMUSG00000021509.6_7	chr13	+	3250	9	NNC	ENSMUSG00000021509.6	novel	3374	8	NA	NA	1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	7.40671148351277	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGACGTCGTGCATC	NA	False	NA	27	True	AATAAA	-17	NA	56586168	56622043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56619742_56620237_56620350
ENSMUSG00000021510.12_0	chr13	-	2887	1	ISM	ENSMUSG00000021510.12	ENSMUST00000012314.10	9455	4	17904	4238	-1034	26	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTAGCCTATTTTATTT	NA	False	NA	-2	True	NA	NA	NA	67768006	67765119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67765100_67768000
ENSMUSG00000021510.12_1	chr13	-	4223	5	NIC	ENSMUSG00000021510.12	novel	9455	4	NA	NA	6	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	13.2382022948737	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTAATTCTGTTGAAA	NA	False	NA	NA	False	NA	NA	NA	67785904	67764436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_67764668_67766338_67769969_67771586_67771683_67772153_67772281_67785765
ENSMUSG00000021510.12_2	chr13	-	5211	4	FSM	ENSMUSG00000021510.12	ENSMUST00000012314.10	9455	4	4	4240	4	24	multi-exon	FALSE	canonical	3	9	junction_2	10.6144555520604	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGAGTAGCCTATTTTAT	NA	False	NA	-4	True	NA	NA	NA	67785906	67765121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67769969_67771586_67771683_67772153_67772281_67785765
ENSMUSG00000021514.19_13	chr13	+	9112	7	ISM	ENSMUSG00000021514.19	ENSMUST00000126879.8	2909	8	486	-6416	397	-9	3prime_fragment	FALSE	canonical	3	32	junction_6	11.0554159678513	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAACTTTTTTTTTCTGCT	NA	False	NA	16	True	AATAAA	-9	NA	65427113	65452025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65443876
ENSMUSG00000021514.19_21	chr13	+	1535	8	FSM	ENSMUSG00000021514.19	ENSMUST00000130799.8	1580	8	21	24	-17	-23	multi-exon	FALSE	canonical	1	4	junction_7	17.3980998258724	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACTATTGTGTGGAAC	NA	False	NA	2	True	ACTAAA	-17	NA	65426648	65452011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65451631
ENSMUSG00000021514.19_4	chr13	+	9293	8	FSM	ENSMUSG00000021514.19	ENSMUST00000126879.8	2909	8	34	-6418	-4	-7	multi-exon	FALSE	canonical	3	28	junction_1	11.5564276663752	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTTTTTTTTCTGCTGT	NA	False	NA	18	True	AATAAA	-11	NA	65426661	65452027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65443876
ENSMUSG00000021514.19_5	chr13	+	9381	8	NIC	ENSMUSG00000021514.19	novel	2909	8	NA	NA	-1	-27	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	15.7829667938676	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATAAACTATTGTGTG	NA	False	NA	-2	True	ACTAAA	-13	NA	65426664	65452007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_65426913_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65443876
ENSMUSG00000021514.19_7	chr13	+	9153	7	NIC	ENSMUSG00000021514.19	novel	2909	8	NA	NA	-11	-27	combination_of_known_splicesites	FALSE	canonical	2	5	junction_6	18.4722013366632	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATAAACTATTGTGTG	NA	False	NA	-2	True	ACTAAA	-13	NA	65426654	65452007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443876
ENSMUSG00000021514.19_9	chr13	+	1398	7	NIC	ENSMUSG00000021514.19	novel	1580	8	NA	NA	-7	-23	combination_of_known_splicesites	FALSE	canonical	3	17	junction_6	15.1840559652405	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACTATTGTGTGGAAC	NA	False	NA	2	True	ACTAAA	-17	NA	65426658	65452011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65451631
ENSMUSG00000021518.5_0	chr13	+	2465	13	FSM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	562	397	-56	-122	multi-exon	FALSE	canonical	3	153	junction_7	19.2476549798209	355	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGATCTGTCTTTGTTAGA	8420	False	NA	24	True	ATTAAA	-10	NA	67081455	67146068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_67081751_67093340_67093433_67101583_67101629_67104445_67104571_67111376_67111536_67114453_67114606_67120557_67120700_67122508_67122622_67124809_67124876_67135817_67135918_67142016_67142086_67143410_67143481_67145031
ENSMUSG00000021519.12_10	chr13	-	3672	7	NIC	ENSMUSG00000021519.12	novel	1479	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	328	junction_5	16.739839372653	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAATGTTTCTGGTTT	424	False	NA	NA	False	AATAAA	-10	NA	67081105	67060189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021519.12_21	chr13	-	1417	8	NIC	ENSMUSG00000021519.12	novel	1479	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_4	109.238178270405	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAATGTTTCTGGTTT	426	False	NA	NA	False	AATAAA	-10	NA	67081103	67060189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065233_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021519.12_26	chr13	-	2354	4	FSM	ENSMUSG00000021519.12	ENSMUST00000174011.8	2353	4	-3	2	0	-2	multi-exon	FALSE	canonical	3	328	junction_2	10.2306728354819	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGCATGGTCATTACTG	424	False	NA	NA	False	AATAAA	-13	NA	67081105	67069254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021519.12_3	chr13	-	1386	8	NIC	ENSMUSG00000021519.12	novel	784	5	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	116.048898912379	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCTATGTATCAGCAACTA	425	False	NA	NA	False	AATAAA	-18	NA	67081104	67055031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_67055248_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021519.12_5	chr13	-	1424	8	FSM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	47	8	0	0	multi-exon	FALSE	canonical	3	328	junction_6	16.4005973012185	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAATGTTTCTGGTTT	424	False	NA	NA	False	AATAAA	-10	NA	67081105	67060189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021519.12_9	chr13	-	4635	2	ISM	ENSMUSG00000021519.12	ENSMUST00000173891.8	397	3	-1953	5158	1077	0	5prime_fragment	FALSE	canonical	3	371	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAATGTTTCTGGTTT	NA	False	NA	NA	False	AATAAA	-10	NA	67066648	67060189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67062853_67064676
ENSMUSG00000021520.5_0	chr13	-	479	4	FSM	ENSMUSG00000021520.5	ENSMUST00000021993.5	535	4	53	3	53	-3	multi-exon	FALSE	canonical	3	4784	junction_3	381.861231339344	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTGGATTATTTGAATT	7765	False	NA	-28	True	AATAAA	-15	NA	67053389	67048683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67048891_67049465_67049633_67050793_67050866_67053356
ENSMUSG00000021520.5_1	chr13	-	447	3	ISM	ENSMUSG00000021520.5	ENSMUST00000021993.5	535	4	2576	3	-16	-3	3prime_fragment	FALSE	canonical	3	5540	junction_1	49.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTGGATTATTTGAATT	NA	False	NA	-28	True	AATAAA	-15	NA	67050866	67048683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67048891_67049465_67049633_67050793
ENSMUSG00000021532.12_0	chr13	+	2282	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	45.0175891550551	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTTAATTGTCCGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	68730359	68740397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_68730384_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ENSMUSG00000021532.12_17	chr13	+	1895	6	ISM	ENSMUSG00000021532.12	ENSMUST00000051784.10	2421	7	1653	61	-923	-1	3prime_fragment	FALSE	canonical	3	140	junction_3	7.47261667690776	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATGTTAATTGTCCGTC	NA	False	NA	NA	False	AATAAA	-13	NA	68732019	68740396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ENSMUSG00000021532.12_2	chr13	+	2592	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-4	-6	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	39.5010548382361	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGTAAATGTTAATTGT	NA	False	NA	NA	False	AATAAA	-8	NA	68730377	68740391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ENSMUSG00000021532.12_3	chr13	+	2753	7	NIC	ENSMUSG00000021532.12	novel	2501	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_4	59.418478233253	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGTGTGTACTCTTGTT	NA	False	NA	NA	False	AATAAA	-12	NA	68730377	68740455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737341_68737509_68738224_68738340_68740049
ENSMUSG00000021532.12_4	chr13	+	2342	7	FSM	ENSMUSG00000021532.12	ENSMUST00000051784.10	2421	7	15	64	0	-4	multi-exon	FALSE	canonical	3	43	junction_1	41.7053154086303	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTAAATGTTAATTGTCC	NA	False	NA	NA	False	AATAAA	-10	NA	68730381	68740393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_68730470_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ENSMUSG00000021537.10_0	chr13	+	799	5	FSM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	188	239	-13	0	multi-exon	FALSE	canonical	3	1314	junction_2	32.392128673491	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCATGTGGTGTATGTTA	NA	False	NA	21	True	TATAAA	-14	NA	81931383	81945035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
ENSMUSG00000021537.10_2	chr13	+	5294	4	ISM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	194	244	-7	-5	intron_retention	FALSE	canonical	3	1314	junction_2	35.311313893551	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCAAATCATGTGGTGTA	NA	False	NA	16	True	TATAAA	-9	NA	81931389	81945030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074
ENSMUSG00000021540.17_1	chr13	+	6497	7	FSM	ENSMUSG00000021540.17	ENSMUST00000069557.14	6584	7	82	5	26	-5	multi-exon	FALSE	canonical	3	51	junction_1	16.5495887830752	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTACAGTGTCTTTGTTTA	NA	False	NA	8	True	AATAAA	-12	NA	56850904	56890185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_56850945_56871241_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
ENSMUSG00000021540.17_10	chr13	+	1503	5	ISM	ENSMUSG00000021540.17	ENSMUST00000109876.8	4570	7	319	6754	-297	-8	5prime_fragment	FALSE	canonical	3	10	junction_1	34.4855042010408	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAGATACAACTAGTC	NA	False	NA	NA	False	ATTAAA	-11	NA	56851183	56881019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_56851390_56871241_56871810_56875216_56875469_56876322_56876443_56880662
ENSMUSG00000021540.17_12	chr13	+	2363	7	FSM	ENSMUSG00000021540.17	ENSMUST00000109876.8	4570	7	356	1851	-260	-884	multi-exon	FALSE	canonical	3	10	junction_1	28.5856413062378	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATTTCTCATTTACTCA	NA	False	NA	NA	False	TTTAAA	-7	NA	56851220	56885922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_56851390_56871241_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
ENSMUSG00000021540.17_13	chr13	+	6460	6	ISM	ENSMUSG00000021540.17	ENSMUST00000069557.14	6584	7	20417	4	-9590	-4	3prime_fragment	FALSE	canonical	3	56	junction_4	14.3303872941383	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACAGTGTCTTTGTTTAT	NA	False	NA	9	True	AATAAA	-13	NA	56871239	56890186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
ENSMUSG00000021540.17_18	chr13	+	3131	1	ISM	ENSMUSG00000021540.17	ENSMUST00000069557.14	6584	7	36233	4	6226	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACAGTGTCTTTGTTTAT	NA	False	NA	9	True	AATAAA	-13	NA	56887055	56890186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_56887100_56890200
ENSMUSG00000021540.17_5	chr13	+	1332	5	FSM	ENSMUSG00000021540.17	ENSMUST00000138677.8	1398	5	55	11	28	-11	multi-exon	FALSE	canonical	3	51	junction_1	17.4696164811939	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAATAAAGATACAACTA	NA	False	NA	NA	False	ATTAAA	-8	NA	56850906	56881016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_56850945_56871241_56871810_56875216_56875469_56876322_56876443_56880662
ENSMUSG00000021541.15_0	chr13	-	1843	7	ISM	ENSMUSG00000021541.15	ENSMUST00000173067.9	2022	8	77549	-649	77549	-2	3prime_fragment	FALSE	canonical	0	0	junction_4	2.21108319357027	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAAGAGCCTGGGGGTCT	NA	False	NA	NA	False	AATAAA	-7	NA	56958380	56920927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_56921747_56923929_56924006_56930323_56930405_56931435_56931658_56937414_56937611_56952325_56952591_56958196
ENSMUSG00000021546.19_0	chr13	-	2023	16	FSM	ENSMUSG00000021546.19	ENSMUST00000224182.2	2754	16	15	716	1	-1	multi-exon	FALSE	canonical	3	4568	junction_3	976.692573035253	3626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGGTGGTCTTTTTTT	4766	False	NA	-6	True	AATAAA	-13	NA	58550315	58539764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_10	chr13	-	1906	16	NIC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	1429	junction_15	1716.40976718524	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGGTGGTCTTTTTTT	5152	False	NA	-6	True	AATAAA	-13	NA	58549929	58539764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUSG00000021546.19_3	chr13	-	1968	16	FSM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	24	712	-1	-1	multi-exon	FALSE	canonical	3	1429	junction_15	1661.36162897252	848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGGTGGTCTTTTTTT	5150	False	NA	-6	True	AATAAA	-13	NA	58549931	58539764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUSG00000021546.19_7	chr13	-	1963	16	FSM	ENSMUSG00000021546.19	ENSMUST00000043269.14	2676	16	1	712	1	-1	multi-exon	FALSE	canonical	3	4513	junction_1	1087.93485507584	2673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGGTGGTCTTTTTTT	4766	False	NA	-6	True	AATAAA	-13	NA	58550315	58539764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021548.11_0	chr13	+	1193	9	FSM	ENSMUSG00000021548.11	ENSMUST00000022030.11	2045	9	33	819	6	-1	multi-exon	FALSE	canonical	3	824	junction_5	83.2840583485219	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATATTTTCTTTGTGATT	NA	False	NA	9	True	ATTAAA	-16	NA	85337559	85361023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUSG00000021548.11_1	chr13	+	1089	9	FSM	ENSMUSG00000021548.11	ENSMUST00000163600.8	1055	9	-37	3	5	2	multi-exon	FALSE	canonical	3	111	junction_4	292.63455772516	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTCTTTGTGATTGTT	NA	False	NA	12	True	ATTAAA	-19	NA	85337558	85361026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350559_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUSG00000021548.11_4	chr13	+	1011	9	NIC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	4	-5	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	310.456921327259	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTATATATTTTCTTTGT	NA	False	NA	5	True	ATTAAA	-12	NA	85337557	85361019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_85337772_85338872_85338996_85344370_85344445_85345649_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUSG00000021549.15_2	chr13	-	4314	25	FSM	ENSMUSG00000021549.15	ENSMUST00000109552.3	4563	25	-48	297	-48	-297	multi-exon	TRUE	canonical	3	186	junction_11	23.7235232534199	445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAACTGATTAGCTTACT	NA	False	NA	-9	True	AATAAA	-15	NA	85437196	85363195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_85364307_85364995_85365131_85366300_85366379_85367524_85367614_85369589_85369658_85371576_85371664_85372321_85372438_85373600_85373744_85374652_85374813_85375070_85375244_85376349_85376427_85376726_85376885_85377723_85377802_85378506_85378595_85381707_85381865_85382478_85382600_85386257_85386337_85392306_85392458_85394709_85394763_85398550_85398583_85400544_85400663_85403502_85403574_85404457_85404594_85406436_85406590_85436514
ENSMUSG00000021550.7_0	chr13	-	1165	4	FSM	ENSMUSG00000021550.7	ENSMUST00000022032.7	3051	4	21	1865	21	-1865	multi-exon	TRUE	canonical	3	402	junction_2	21.2289111041209	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTGGTGCACGCCTTT	NA	False	NA	-17	True	TATAAA	-19	NA	58533018	58529495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_58529824_58530221_58530418_58531963_58532224_58532637
ENSMUSG00000021552.8_0	chr13	-	1650	12	FSM	ENSMUSG00000021552.8	ENSMUST00000091579.6	1523	12	-132	5	-132	-5	multi-exon	FALSE	canonical	0	0	junction_5	54.7743681383791	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCTGTGTGATCTTCA	NA	False	NA	-3	True	AATAAA	-17	NA	58422134	58381164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755_58412014_58421887
ENSMUSG00000021552.8_10	chr13	-	1554	11	NIC	ENSMUSG00000021552.8	novel	1523	12	NA	NA	-138	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	57.4174189597547	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCTGTGTGATCTTCA	NA	False	NA	-3	True	AATAAA	-17	NA	58422140	58381164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755_58412014_58421887
ENSMUSG00000021552.8_3	chr13	-	1802	13	NIC	ENSMUSG00000021552.8	novel	1523	12	NA	NA	-96	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	67.3916826388011	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCTGTGTGATCTTCA	NA	False	NA	-3	True	AATAAA	-17	NA	58422098	58381164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755_58412014_58421447_58421636_58421887
ENSMUSG00000021552.8_8	chr13	-	2569	6	ISM	ENSMUSG00000021552.8	ENSMUST00000091579.6	1523	12	28441	5	-1796	-5	3prime_fragment	FALSE	canonical	0	0	junction_5	66.2299026120377	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCTGTGTGATCTTCA	8972	False	NA	-3	True	AATAAA	-17	NA	58393561	58381164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615
ENSMUSG00000021553.15_1	chr13	-	4559	18	FSM	ENSMUSG00000021553.15	ENSMUST00000022036.14	4567	18	3	5	3	-5	multi-exon	FALSE	canonical	0	0	junction_1	1.22545097976469	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGTTGGGATTATTTGT	3621	False	NA	NA	False	NA	NA	NA	58758688	58701123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_58703631_58706022_58706135_58706366_58706466_58707022_58707105_58710828_58711027_58711830_58712000_58714038_58714170_58717090_58717217_58719258_58719340_58720370_58720452_58721257_58721336_58722054_58722169_58724538_58724684_58726218_58726409_58728328_58728421_58730427_58730514_58735995_58736086_58758510
ENSMUSG00000021555.16_1	chr13	+	2546	23	FSM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	102	1145	3	25	multi-exon	FALSE	canonical	3	649	junction_6	70.4314478267713	980	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	1312	False	NA	46	True	AATAAA	-8	NA	59733210	59782591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
ENSMUSG00000021556.13_0	chr13	-	3549	10	FSM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	31	374	0	-4	multi-exon	TRUE	canonical	3	421	junction_9	46.3947102135844	1101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTTTAGGGTTGTTTG	NA	False	NA	-9	True	AATAAA	-18	NA	59823594	59782813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
ENSMUSG00000021556.13_6	chr13	-	1768	1	ISM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	39046	372	39007	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTTAGGGTTGTTTGGT	NA	False	NA	-7	True	AATAAA	-20	NA	59784579	59782811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_59782800_59784600
ENSMUSG00000021557.16_0	chr13	-	3411	1	ISM	ENSMUSG00000021557.16	ENSMUST00000022040.14	8174	26	107695	464	612	-464	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATGGTGTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59597430	59594019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_59594000_59597400
ENSMUSG00000021557.16_1	chr13	-	4378	26	FSM	ENSMUSG00000021557.16	ENSMUST00000022040.14	8174	26	1	3795	1	0	multi-exon	FALSE	canonical	2	7	junction_25	6.92242731995071	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTCTTGTCATCTTT	1056	False	NA	-3	True	AATAAA	-17	NA	59705124	59597350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807_59624953_59630330_59630419_59643146_59643296_59643376_59643464_59644789_59644874_59647827_59648517_59652007_59652125_59655772_59655871_59660137_59660316_59661900_59662110_59665466_59665505_59672959_59673054_59676200_59676333_59678870_59679018_59679826_59679891_59680985_59681054_59684062_59684188_59692200_59692266_59705036
ENSMUSG00000021557.16_13	chr13	-	3427	18	FSM	ENSMUSG00000021557.16	ENSMUST00000109830.9	2879	18	-32	-516	1	516	multi-exon	FALSE	canonical	2	4	junction_1	6.94416685335233	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCATTTGTATCGTGGGT	1048	False	NA	NA	False	AAGAAA	-5	NA	59705132	59640697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_59641685_59643146_59643296_59643376_59643464_59644789_59644874_59647827_59648517_59652007_59652125_59655772_59655871_59660137_59660316_59661900_59662110_59665466_59665505_59672959_59673054_59676200_59676333_59678870_59679018_59679826_59679891_59680985_59681054_59684062_59684188_59692200_59692266_59705036
ENSMUSG00000021557.16_15	chr13	-	3010	18	FSM	ENSMUSG00000021557.16	ENSMUST00000171606.9	3037	18	31	-4	1	4	multi-exon	FALSE	canonical	2	4	junction_1	7.14554571249893	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGACTTTATGCATATG	1078	False	NA	NA	False	ATTAAA	-23	NA	59705102	59641209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_59641685_59643146_59643296_59643376_59643464_59644789_59644874_59647827_59648517_59652007_59652125_59655772_59655871_59660137_59660316_59661900_59662110_59665466_59665505_59672959_59673054_59676200_59676333_59678870_59679018_59679826_59679891_59680985_59681054_59684062_59684188_59692200_59692266_59704911
ENSMUSG00000021557.16_2	chr13	-	1969	9	NNC	ENSMUSG00000021557.16	novel	4143	25	NA	NA	-3320	0	intron_retention	FALSE	canonical	2	7	junction_8	8.08451451851006	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTCTTGTCATCTTT	NA	False	NA	-3	True	AATAAA	-17	NA	59625715	59597350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807_59624953_59625604
ENSMUSG00000021557.16_21	chr13	-	2669	8	ISM	ENSMUSG00000021557.16	ENSMUST00000169745.8	4143	25	78963	-333	-3378	-10	3prime_fragment	FALSE	canonical	3	18	junction_3	5.31075151298317	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGAGTCTGCATTTCTCT	NA	False	NA	-13	True	AATAAA	-7	NA	59625773	59597360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807
ENSMUSG00000021557.16_3	chr13	-	4270	25	NIC	ENSMUSG00000021557.16	novel	8174	26	NA	NA	-16	0	intron_retention	FALSE	canonical	2	7	junction_24	6.95708571649557	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTCTTGTCATCTTT	1003	False	NA	-3	True	AATAAA	-17	NA	59705177	59597350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_59598129_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807_59624953_59630330_59630419_59643146_59643296_59643376_59643464_59644789_59644874_59647827_59648517_59652007_59652125_59655772_59655871_59660137_59660316_59661900_59662110_59665466_59665505_59672959_59673054_59676200_59676333_59678870_59679018_59679826_59679891_59680985_59681054_59684062_59684188_59692200_59692266_59705036
ENSMUSG00000021557.16_4	chr13	-	1942	9	NNC	ENSMUSG00000021557.16	novel	4143	25	NA	NA	-3303	-5	intron_retention	FALSE	canonical	2	3	junction_8	9.16429893663449	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGCATTTCTCTTGTCA	NA	False	NA	-8	True	AATAAA	-12	NA	59625698	59597355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807_59624953_59625609
ENSMUSG00000021559.15_1	chr13	+	5375	27	FSM	ENSMUSG00000021559.15	ENSMUST00000226059.2	5009	27	12	-378	2	-11	multi-exon	TRUE	canonical	3	16	junction_26	11.2282004438423	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCACTTGATTGTCTAGT	9833	False	NA	NA	False	AATAAA	-10	NA	60749772	60910994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_60749925_60750238_60750411_60844044_60844267_60864491_60864631_60865827_60865958_60866115_60866165_60866250_60866278_60867423_60867577_60867924_60867971_60869587_60869678_60870833_60870927_60873110_60873231_60873629_60873729_60874375_60874475_60876241_60876341_60877190_60877389_60878638_60878837_60884057_60884157_60887868_60887947_60895914_60896138_60897006_60897196_60898944_60899143_60900027_60900167_60901922_60902044_60905162_60905352_60908448_60909678_60910170
ENSMUSG00000021559.15_2	chr13	+	5868	26	FSM	ENSMUSG00000021559.15	ENSMUST00000077453.13	5491	26	7	-384	7	-6	multi-exon	FALSE	canonical	3	41	junction_19	8.36334861165072	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATTGTCTAGTCCTTG	9838	False	NA	NA	False	AATAAA	-15	NA	60749777	60910999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_60749925_60750238_60750411_60844044_60844267_60864491_60864631_60865827_60865958_60866115_60866165_60866250_60866278_60867423_60867577_60867924_60867971_60869587_60869678_60870833_60870927_60873110_60873231_60873629_60873729_60874375_60874475_60876241_60876341_60877190_60877389_60878638_60878837_60884057_60884157_60887868_60887947_60895914_60896138_60897006_60897196_60898944_60899143_60900027_60900167_60901922_60902044_60905162_60905352_60908448
ENSMUSG00000021559.15_28	chr13	+	1964	1	NIC	ENSMUSG00000021559.15	novel	5304	27	NA	NA	7226	-6	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATTGTCTAGTCCTTG	6501	False	NA	NA	False	AATAAA	-15	NA	60909035	60910999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_60909000_60911000
ENSMUSG00000021567.16_3	chr13	-	2396	10	FSM	ENSMUSG00000021567.16	ENSMUST00000022051.14	4016	10	21	1599	1	-439	multi-exon	FALSE	canonical	2	3	junction_1	1.49897084035912	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGGCACACATACCCTT	NA	False	NA	NA	False	AATAAA	-17	NA	73995729	73968251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_73969657_73970808_73970937_73971390_73971476_73972367_73972513_73973184_73973281_73973802_73973931_73974995_73975057_73995031_73995136_73995388_73995425_73995521
ENSMUSG00000021569.11_0	chr13	-	2218	13	FSM	ENSMUSG00000021569.11	ENSMUST00000022053.11	3399	13	66	1115	66	-4	multi-exon	FALSE	canonical	3	435	junction_6	23.4319345243955	644	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTCTCTTATTTTTATT	NA	False	NA	-24	True	ATTAAA	-10	NA	74085837	74060580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068554_74069291_74069356_74076029_74076103_74077777_74077869_74078278_74078335_74080976_74081107_74084225_74084392_74085608
ENSMUSG00000021572.10_1	chr13	-	3504	11	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	16	-13	intron_retention	FALSE	canonical	3	100	junction_7	14.9946657181812	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACCTCCCCACTTCTG	NA	False	NA	-13	True	NA	NA	NA	74210402	74185764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ENSMUSG00000021572.10_2	chr13	-	2248	12	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	17	-3	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	25.7267908724551	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACTTCTGGTTCACTCTT	NA	False	NA	-3	True	NA	NA	NA	74210401	74185754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ENSMUSG00000021572.10_6	chr13	-	2313	12	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	30.6737026303942	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCTGGTTCACTCTTTT	NA	False	NA	-1	True	NA	NA	NA	74210401	74185752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198355_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ENSMUSG00000021572.10_7	chr13	-	2486	12	FSM	ENSMUSG00000021572.10	ENSMUST00000036456.8	3641	12	17	1138	17	-5	multi-exon	FALSE	canonical	3	27	junction_5	28.6590098045136	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCACTTCTGGTTCACTC	NA	False	NA	-5	True	NA	NA	NA	74210401	74185756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198178_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ENSMUSG00000021576.7_0	chr13	-	1063	6	FSM	ENSMUSG00000021576.7	ENSMUST00000022060.7	1131	6	56	12	19	-4	multi-exon	FALSE	canonical	3	601	junction_2	85.1666601435092	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTTGCCTAGTTTTGGC	NA	False	NA	-11	True	AATAAA	-13	NA	74465384	74451639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74452168_74453659_74453770_74457802_74457962_74459786_74459832_74464448_74464511_74465225
ENSMUSG00000021576.7_2	chr13	-	1059	6	FSM	ENSMUSG00000021576.7	ENSMUST00000222759.2	1376	6	313	4	17	-4	multi-exon	FALSE	canonical	3	148	junction_2	263.104085867172	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTTGCCTAGTTTTGGC	NA	False	NA	-11	True	AATAAA	-13	NA	74465386	74451639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74452168_74453659_74453770_74457808_74457962_74459786_74459832_74464448_74464511_74465225
ENSMUSG00000021577.15_0	chr13	-	2840	15	FSM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	54	6	9	-6	multi-exon	FALSE	canonical	3	1480	junction_7	176.694897308026	2946	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTGCTTTTGGTCAAGG	NA	False	NA	-14	True	NA	NA	NA	74498345	74470378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
ENSMUSG00000021578.18_0	chr13	+	3303	3	FSM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	42	6214	0	-1126	multi-exon	FALSE	canonical	3	416	junction_2	9.5	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGAGTTTAGCCACACT	4392	False	NA	-89	True	AATAAA	-4	NA	74498469	74507688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_74498528_74500974_74501106_74504574
ENSMUSG00000021578.18_12	chr13	+	2607	1	ISM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	6750	6118	6694	-1030	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACGTGATGATTTGTTTCT	NA	False	NA	7	True	AATAAA	-18	NA	74505177	74507784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_74505200_74507800
ENSMUSG00000021578.18_13	chr13	+	1446	1	ISM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	7913	6116	7857	-1028	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGATGATTTGTTTCTCA	NA	False	NA	9	True	AATAAA	-20	NA	74506340	74507786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_74506300_74507800
ENSMUSG00000021578.18_2	chr13	+	3383	3	NNC	ENSMUSG00000021578.18	novel	9559	3	NA	NA	0	-1045	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAACGAGTCTTTCTTACG	4392	False	NA	-8	True	AATAAA	-3	NA	74498469	74507769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_74498528_74500975_74501106_74504574
ENSMUSG00000021583.8_0	chr13	+	2971	19	FSM	ENSMUSG00000021583.8	ENSMUST00000169114.3	5644	19	291	2382	4	-2382	multi-exon	TRUE	canonical	1	4	junction_16	2.26077666104176	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACTGAAGATATTTTCTT	NA	False	NA	NA	False	ACTAAA	-17	NA	74787977	74838938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_74788013_74794289_74794834_74805751_74805891_74808388_74808524_74810427_74810549_74811527_74811683_74812227_74812342_74814217_74814350_74814562_74814695_74814836_74814909_74816076_74816232_74817518_74817599_74819426_74819611_74820862_74821020_74821713_74821899_74822740_74822903_74823381_74823523_74823943_74824026_74838692
ENSMUSG00000021585.11_1	chr13	-	2829	30	NIC	ENSMUSG00000021585.11	novel	2857	30	NA	NA	13	-6	combination_of_known_junctions	FALSE	canonical	3	49	junction_27	26.473283146802	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCCTTTCCTGCCTGAA	NA	False	NA	NA	False	AATAAA	-39	NA	74918755	74842379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74918664
ENSMUSG00000021585.11_10	chr13	-	3029	31	NIC	ENSMUSG00000021585.11	novel	5141	32	NA	NA	-122	2	combination_of_known_junctions	TRUE	canonical	3	30	junction_7	33.9593875091999	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCCTGAACTCTACTT	NA	False	NA	NA	False	NA	NA	NA	74956762	74842371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852322_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74928621_74928694_74946774_74946838_74956554
ENSMUSG00000021585.11_11	chr13	-	2769	29	NIC	ENSMUSG00000021585.11	novel	2857	30	NA	NA	13	-6	combination_of_known_junctions	FALSE	canonical	3	30	junction_7	26.471658891913	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCCTTTCCTGCCTGAA	NA	False	NA	NA	False	AATAAA	-39	NA	74918755	74842379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852322_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74918664
ENSMUSG00000021585.11_26	chr13	-	3002	32	NIC	ENSMUSG00000021585.11	novel	5141	32	NA	NA	-11	-9	combination_of_known_junctions	FALSE	canonical	3	15	junction_31	37.1226557681413	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAATCTCCTTTCCTGCCT	NA	False	NA	NA	False	AATAAA	-36	NA	74956069	74842382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74928621_74928694_74946774_74946838_74955937
ENSMUSG00000021585.11_3	chr13	-	2767	29	FSM	ENSMUSG00000021585.11	ENSMUST00000222588.2	4765	29	105	1893	18	-6	multi-exon	FALSE	canonical	3	102	junction_28	16.6207701385947	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCCTTTCCTGCCTGAA	NA	False	NA	NA	False	AATAAA	-39	NA	74918750	74842379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74918664
ENSMUSG00000021585.11_33	chr13	-	2953	31	FSM	ENSMUSG00000021585.11	ENSMUST00000065629.6	2910	31	-16	-27	-16	-6	multi-exon	FALSE	canonical	3	15	junction_30	32.8517883835873	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCCTTTCCTGCCTGAA	NA	False	NA	NA	False	AATAAA	-39	NA	74956074	74842379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74928621_74928694_74946774_74946838_74955937
ENSMUSG00000021585.11_5	chr13	-	3093	32	FSM	ENSMUSG00000021585.11	ENSMUST00000223206.2	5141	32	155	1893	-134	-6	multi-exon	FALSE	canonical	3	49	junction_27	33.4677691410694	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCCTTTCCTGCCTGAA	NA	False	NA	NA	False	AATAAA	-39	NA	74956774	74842379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74928621_74928694_74946774_74946838_74956554
ENSMUSG00000021585.11_8	chr13	-	3037	31	NIC	ENSMUSG00000021585.11	novel	5141	32	NA	NA	-135	-6	combination_of_known_junctions	FALSE	canonical	3	58	junction_30	28.2737609022138	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCCTTTCCTGCCTGAA	NA	False	NA	NA	False	AATAAA	-39	NA	74956775	74842379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74928621_74928694_74946774_74946838_74956554
ENSMUSG00000021587.6_0	chr13	+	2564	14	FSM	ENSMUSG00000021587.6	ENSMUST00000022075.6	5040	14	113	2363	23	-2363	multi-exon	FALSE	canonical	1	7	junction_5	4.93268293596351	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTCAGTGTTTAAGAGTA	NA	False	NA	NA	False	AATGAA	-17	NA	75238057	75280617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_75238361_75241201_75241307_75244408_75244520_75246019_75246167_75247395_75247473_75254069_75254159_75258936_75259110_75260660_75260874_75263355_75263457_75273968_75274203_75274842_75275001_75275928_75276063_75278160_75278323_75280060
ENSMUSG00000021587.6_4	chr13	+	1138	5	ISM	ENSMUSG00000021587.6	ENSMUST00000022075.6	5040	14	36131	2363	15139	-2363	3prime_fragment	FALSE	canonical	1	9	junction_1	3.24037034920393	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTCAGTGTTTAAGAGTA	NA	False	NA	NA	False	AATGAA	-17	NA	75274075	75280617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_75274203_75274842_75275001_75275928_75276063_75278160_75278323_75280060
ENSMUSG00000021587.6_6	chr13	+	488	4	ISM	ENSMUSG00000021587.6	ENSMUST00000135349.2	1419	6	3165	7204	3165	-7204	internal_fragment	FALSE	canonical	3	15	junction_2	3.85861230093008	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTTGTTTTGGAGACTT	NA	False	NA	NA	False	AATAAA	-17	NA	75241199	75247518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_75241307_75244408_75244520_75246019_75246167_75247395
ENSMUSG00000021589.14_0	chr13	-	4997	12	FSM	ENSMUSG00000021589.14	ENSMUST00000022078.12	4980	12	-27	10	-27	-10	multi-exon	FALSE	canonical	3	85	junction_5	11.3494456849386	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAACAAGTTCAATGAA	6619	False	NA	NA	False	AATAAA	-10	NA	76092013	76017665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_76020581_76024289_76024387_76025491_76025659_76026915_76027090_76041024_76041146_76050296_76050410_76058748_76059115_76061461_76061574_76065811_76065967_76087570_76087758_76091325_76091552_76091649
ENSMUSG00000021589.14_6	chr13	-	2415	1	ISM	ENSMUSG00000021589.14	ENSMUST00000022078.12	4980	12	71906	10	5434	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAACAAGTTCAATGAA	NA	False	NA	NA	False	AATAAA	-10	NA	76020080	76017665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_76017700_76020100
ENSMUSG00000021591.9_0	chr13	+	1299	3	FSM	ENSMUSG00000021591.9	ENSMUST00000022082.8	1345	3	40	6	-2	-6	multi-exon	FALSE	canonical	3	287	junction_1	16	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAATGACTTTTGTCCGG	NA	False	NA	24	True	ATTAAA	-16	NA	75988026	75998264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_75988295_75995288_75995418_75997362
ENSMUSG00000021591.9_1	chr13	+	1293	3	NNC	ENSMUSG00000021591.9	novel	1345	3	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	128	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTAATGACTTTTGTCC	NA	False	NA	22	True	ATTAAA	-14	NA	75988026	75998262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_75988295_75995288_75995418_75997366
ENSMUSG00000021592.19_1	chr13	-	3182	8	FSM	ENSMUSG00000021592.19	ENSMUST00000239063.2	3657	8	15	460	15	-460	multi-exon	TRUE	canonical	3	9	junction_3	7.18558647997674	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTAAAATATTCTTTAA	9791	False	NA	NA	False	AATAAA	-11	NA	76246764	76209000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_76210722_76213398_76213624_76214753_76214979_76220218_76220391_76222893_76223171_76239776_76239937_76242006_76242137_76246492
ENSMUSG00000021592.19_2	chr13	-	1103	1	ISM	ENSMUSG00000021592.19	ENSMUST00000239063.2	3657	8	36694	442	15414	-442	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTTTATCAATCTCTA	NA	False	NA	NA	False	AATAAA	-29	NA	76210085	76208982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_76209000_76210100
ENSMUSG00000021592.19_3	chr13	-	2590	5	NIC	ENSMUSG00000021592.19	novel	3657	8	NA	NA	-16	-447	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	14.6372811683044	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTAAAATGTTTATCAAT	9817	False	NA	NA	False	AATAAA	-24	NA	76246738	76208987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_76210722_76213398_76213624_76214753_76214979_76239776_76239937_76246492
ENSMUSG00000021594.12_0	chr13	-	2641	5	FSM	ENSMUSG00000021594.12	ENSMUST00000091514.6	2644	5	0	3	0	-3	multi-exon	FALSE	canonical	2	14	junction_3	7.15454401062709	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCTATTGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	69759561	69721570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_69723316_69734703_69734855_69743034_69743137_69748349_69748517_69759085
ENSMUSG00000021594.12_1	chr13	-	2037	4	ISM	ENSMUSG00000021594.12	ENSMUST00000091514.6	2644	5	11173	3	-5440	-3	3prime_fragment	FALSE	canonical	2	14	junction_3	7.87400787401181	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCTATTGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	69748388	69721570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_69723316_69734703_69734855_69743034_69743137_69748349
ENSMUSG00000021595.19_0	chr13	+	2804	19	FSM	ENSMUSG00000021595.19	ENSMUST00000109699.11	2834	19	26	4	-7	-4	multi-exon	FALSE	canonical	3	1529	junction_7	132.889457914055	3557	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATCTTGGCATGAGACT	NA	False	NA	27	True	AATAAA	-15	NA	69760160	69782449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_69760308_69760419_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
ENSMUSG00000021597.17_10	chr13	-	3441	19	NIC	ENSMUSG00000021597.17	novel	3747	21	NA	NA	-1	-6	combination_of_known_splicesites	FALSE	canonical	2	3	junction_13	34.6410161513775	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATGTTTCATAGTCTT	NA	False	NA	-8	True	AATAAA	-16	NA	77283580	77191212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ENSMUSG00000021597.17_6	chr13	-	3576	20	NIC	ENSMUSG00000021597.17	novel	3747	21	NA	NA	8	-6	combination_of_known_splicesites	FALSE	canonical	3	7	junction_14	34.3358836872922	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATGTTTCATAGTCTT	NA	False	NA	-8	True	AATAAA	-16	NA	77283571	77191212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77251599_77251744_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ENSMUSG00000021597.17_8	chr13	-	3583	20	NIC	ENSMUSG00000021597.17	novel	3747	21	NA	NA	1	-6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_13	35.2448499214194	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATGTTTCATAGTCTT	NA	False	NA	-8	True	AATAAA	-16	NA	77283578	77191212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77252652_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ENSMUSG00000021597.17_9	chr13	-	3736	21	FSM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	5	6	-3	-6	multi-exon	FALSE	canonical	3	56	junction_14	27.7961777947976	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATGTTTCATAGTCTT	NA	False	NA	-8	True	AATAAA	-16	NA	77283587	77191212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77251599_77251744_77252652_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ENSMUSG00000021598.10_0	chr13	+	875	4	FSM	ENSMUSG00000021598.10	ENSMUST00000022089.10	913	4	33	5	-17	-1	multi-exon	FALSE	canonical	3	786	junction_3	16.1314048434171	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCATTTCATGTAATTCTT	-1	True	NA	22	True	AATAAA	-18	NA	69957992	69964218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_69958172_69959725_69959810_69961822_69961926_69963709
ENSMUSG00000021598.10_1	chr13	+	1342	1	NIC	ENSMUSG00000021598.10	novel	913	4	NA	NA	3173	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCATTTCATGTAATTCTT	2983	False	NA	22	True	AATAAA	-18	NA	69962876	69964218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_69962900_69964200
ENSMUSG00000021598.10_3	chr13	+	2656	3	FSM	ENSMUSG00000021598.10	ENSMUST00000221893.2	815	3	-40	-1801	-17	-4	multi-exon	FALSE	canonical	3	811	junction_1	7	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCTCATTTCATGTAATT	-1	True	NA	19	True	AATAAA	-15	NA	69957992	69964215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_69958172_69959725_69959810_69961822
ENSMUSG00000021598.10_5	chr13	+	4210	2	FSM	ENSMUSG00000021598.10	ENSMUST00000221045.2	4197	2	-17	4	-17	-4	multi-exon	FALSE	canonical	3	825	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCTCATTTCATGTAATT	-1	True	NA	19	True	AATAAA	-15	NA	69957992	69964215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_69959810_69961822
ENSMUSG00000021598.10_6	chr13	+	2413	3	FSM	ENSMUSG00000021598.10	ENSMUST00000220649.2	451	3	-1693	-269	1	1	multi-exon	FALSE	canonical	3	786	junction_2	19.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTCATGTAATTCTTAA	17	False	NA	24	True	AATAAA	-20	NA	69958010	69964220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_69959810_69961822_69961926_69963709
ENSMUSG00000021606.9_0	chr13	-	488	4	FSM	ENSMUSG00000021606.9	ENSMUST00000022097.6	568	4	75	5	-5	0	multi-exon	FALSE	canonical	3	2374	junction_2	33.95094500403	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATAGTGAGTTGTTTCT	NA	False	NA	-8	True	AATAAA	-14	NA	73476586	73467997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476457
ENSMUSG00000021606.9_1	chr13	-	552	4	FSM	ENSMUSG00000021606.9	ENSMUST00000147407.2	534	4	-15	-3	-5	-2	multi-exon	FALSE	canonical	3	341	junction_3	967.204333231723	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGTGAGTTGTTTCTTCC	NA	False	NA	-5	True	AATAAA	-17	NA	73476586	73467994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476396
ENSMUSG00000021607.10_2	chr13	+	1143	3	FSM	ENSMUSG00000021607.10	ENSMUST00000221730.2	717	3	13	-439	13	-3	multi-exon	FALSE	canonical	3	17	junction_1	303	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTGGAGTAGTAGTGT	9296	False	NA	10	True	ATTAAA	-23	NA	73476644	73480294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_73476740_73478978_73479211_73479478
ENSMUSG00000021607.10_3	chr13	+	891	2	FSM	ENSMUSG00000021607.10	ENSMUST00000022098.10	923	2	29	3	-9	-3	multi-exon	FALSE	canonical	3	623	junction_1	0	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTGGAGTAGTAGTGT	NA	False	NA	10	True	ATTAAA	-23	NA	73479135	73480294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_73479211_73479478
ENSMUSG00000021607.10_5	chr13	+	894	2	FSM	ENSMUSG00000021607.10	ENSMUST00000222030.2	680	2	-13	-201	-13	-6	multi-exon	FALSE	canonical	3	30	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACACTCTGGAGTAGTAG	NA	False	NA	7	True	ATTAAA	-20	NA	73479131	73480291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_73479213_73479478
ENSMUSG00000021607.10_6	chr13	+	1133	1	NIC	ENSMUSG00000021607.10	novel	923	2	NA	NA	17	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTGGAGTAGTAGTGT	NA	False	NA	10	True	ATTAAA	-23	NA	73479161	73480294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_73479200_73480300
ENSMUSG00000021608.16_1	chr13	+	3610	14	FSM	ENSMUSG00000021608.16	ENSMUST00000022099.15	3675	14	55	10	21	-10	multi-exon	FALSE	canonical	3	461	junction_10	74.6226800557192	1209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTTTTACAGGCTCGAG	NA	False	NA	13	True	AATAAA	-13	NA	73615370	73664531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_73615637_73632379_73632523_73637005_73637221_73642920_73643034_73644298_73644360_73647417_73647477_73649474_73649510_73651159_73651215_73653620_73653704_73658114_73658241_73658966_73659121_73659418_73659518_73661938_73662081_73662472
ENSMUSG00000021608.16_46	chr13	+	1610	1	ISM	ENSMUSG00000021608.16	ENSMUST00000022099.15	3675	14	47607	9	1401	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTTTACAGGCTCGAGT	NA	False	NA	14	True	AATAAA	-14	NA	73662922	73664532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_73662900_73664500
ENSMUSG00000021609.7_2	chr13	+	3917	15	FSM	ENSMUSG00000021609.7	ENSMUST00000022100.7	3456	15	-484	23	-484	-23	multi-exon	FALSE	canonical	0	0	junction_9	1.57790871674104	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAGAAATATATGTTG	NA	False	NA	NA	False	TATAAA	-2	NA	73684381	73726768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_73684980_73686591_73686921_73688963_73689096_73692799_73693032_73705160_73705300_73706268_73706404_73709001_73709106_73710419_73710545_73714389_73714503_73715632_73715762_73716303_73716404_73717986_73718088_73719568_73719737_73720918_73720991_73725328
ENSMUSG00000021610.9_0	chr13	+	2294	17	FSM	ENSMUSG00000021610.9	ENSMUST00000022102.9	2340	17	44	2	44	-2	multi-exon	FALSE	canonical	3	235	junction_7	20.082544503872	459	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTTTCTTAACCTCTA	NA	False	NA	19	True	AATAAA	-14	NA	73752168	73768722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_73752519_73753048_73753150_73754340_73754531_73755838_73755988_73757022_73757102_73759262_73759381_73759740_73759836_73760512_73760598_73761776_73761881_73762725_73762792_73763291_73763343_73764081_73764165_73764933_73764969_73765696_73765753_73765837_73765883_73766520_73766637_73768151
ENSMUSG00000021611.10_13	chr13	+	3285	15	ISM	ENSMUSG00000021611.10	ENSMUST00000223303.2	3730	17	1053	3	1032	-3	3prime_fragment	FALSE	canonical	3	21	junction_1	5.49953615854862	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGTCTGTCATACTAAT	3255	False	NA	NA	False	AATAAA	-13	NA	73776161	73797959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_73776794_73782270_73782467_73783538_73783720_73784475_73784656_73785324_73785484_73787274_73787377_73788104_73788191_73790094_73790209_73790483_73790556_73792367_73792557_73794299_73794427_73794895_73794958_73796065_73796191_73796406_73796536_73797028
ENSMUSG00000021611.10_2	chr13	+	4311	16	FSM	ENSMUSG00000021611.10	ENSMUST00000022104.9	4313	16	-4	6	1	-6	multi-exon	FALSE	canonical	3	21	junction_2	5.35163526410386	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAATTGTCTGTCATACT	2124	False	NA	NA	False	AATAAA	-10	NA	73775030	73797956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_73775368_73775469_73776794_73782270_73782467_73783538_73783720_73784475_73784656_73785324_73785484_73787274_73787377_73788104_73788191_73790094_73790209_73790483_73790556_73792367_73792557_73794299_73794427_73794895_73794958_73796065_73796191_73796406_73796536_73797028
ENSMUSG00000021614.17_0	chr13	-	5048	8	ISM	ENSMUSG00000021614.17	ENSMUST00000109546.9	12427	15	52017	5	-11584	-5	3prime_fragment	FALSE	canonical	3	44	junction_4	6.41108733494768	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACATTGTGACTTGTCT	NA	False	NA	-6	True	AAGAAA	-18	NA	89838611	89803435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89836403
ENSMUSG00000021614.17_1	chr13	-	1748	1	ISM	ENSMUSG00000021614.17	ENSMUST00000109546.9	12427	15	85446	4	21058	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACATTGTGACTTGTCTG	NA	False	NA	-5	True	AAGAAA	-19	NA	89805182	89803434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_89803400_89805200
ENSMUSG00000021614.17_13	chr13	-	6403	1	NIC	ENSMUSG00000021614.17	novel	12427	15	NA	NA	16485	11599	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCGATGCAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-8	NA	89853605	89847202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_89847200_89853600
ENSMUSG00000021614.17_14	chr13	-	3750	6	FSM	ENSMUSG00000021614.17	ENSMUST00000159337.8	2273	6	-206	-1271	-15	728	multi-exon	FALSE	canonical	3	48	junction_2	6.6932802122726	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTTATCTTGTTCTAAT	2591	False	NA	NA	False	AATAAA	-7	NA	89890643	89858073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
ENSMUSG00000021614.17_15	chr13	-	2822	3	ISM	ENSMUSG00000021614.17	ENSMUST00000159337.8	2273	6	-241	12179	-50	2029	5prime_fragment	FALSE	canonical	3	54	junction_2	6.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTAGCAATGGATTTGCCT	2556	False	NA	NA	False	TTTAAA	-2	NA	89890678	89871523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_89873783_89879577_89879654_89890191
ENSMUSG00000021614.17_3	chr13	-	1979	2	ISM	ENSMUSG00000021614.17	ENSMUST00000109543.9	2321	13	83103	-37	18980	-2	3prime_fragment	FALSE	canonical	3	59	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCATTTTCAGCCTATCT	NA	False	NA	-5	True	AATAAA	-25	NA	89807260	89805137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_89805478_89805621
ENSMUSG00000021614.17_5	chr13	-	7895	14	FSM	ENSMUSG00000021614.17	ENSMUST00000159910.8	8332	14	-241	678	-54	-1	multi-exon	FALSE	canonical	3	34	junction_8	8.56786344567119	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATTTTCAGCCTATCTA	2552	False	NA	-4	True	AATAAA	-26	NA	89890682	89805136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89836403_89841621_89860323_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
ENSMUSG00000021614.17_6	chr13	-	4395	13	FSM	ENSMUSG00000021614.17	ENSMUST00000109543.9	2321	13	-334	-1740	-69	-4	multi-exon	TRUE	canonical	3	4	junction_7	15.55813470682	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACATTGTGACTTGTCTG	2537	False	NA	-5	True	AAGAAA	-19	NA	89890697	89803434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89860323_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
ENSMUSG00000021615.14_1	chr13	-	1467	8	FSM	ENSMUSG00000021615.14	ENSMUST00000022115.14	1540	8	73	0	1	0	multi-exon	FALSE	canonical	3	129	junction_1	13.6993966796993	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATGTTATTTAACTG	NA	False	NA	-7	True	AATAAA	-14	NA	90237654	89997039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237615
ENSMUSG00000021615.14_2	chr13	-	1528	8	NIC	ENSMUSG00000021615.14	novel	1540	8	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_7	49.108792180095	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATGTTATTTAACTG	NA	False	NA	-7	True	AATAAA	-14	NA	90237228	89997039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237128
ENSMUSG00000021615.14_6	chr13	-	2763	8	NNC	ENSMUSG00000021615.14	novel	424	4	NA	NA	1	-89609	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	51.1380684110803	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGATTGTGTTAGTTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	90237654	90086648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_90088488_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237615
ENSMUSG00000021619.7_2	chr13	-	1235	8	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6066	35	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	7.14856914468389	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTCAGGAGCAATGGATT	4946	False	NA	NA	False	AATAAA	-33	NA	91366012	91083952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365852
ENSMUSG00000021621.16_0	chr13	-	1523	6	FSM	ENSMUSG00000021621.16	ENSMUST00000022121.13	1541	6	18	0	18	0	multi-exon	FALSE	canonical	3	84	junction_2	29.1108227296997	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	AATAAA	-16	NA	91955806	91944651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_91945374_91946941_91947011_91948729_91948823_91948984_91949136_91953869_91954280_91955728
ENSMUSG00000021621.16_1	chr13	-	695	1	ISM	ENSMUSG00000021621.16	ENSMUST00000022121.13	1541	6	10478	0	3753	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	AATAAA	-16	NA	91945346	91944651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_91944700_91945300
ENSMUSG00000021621.16_14	chr13	-	1454	5	NIC	ENSMUSG00000021621.16	novel	1541	6	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	56.3427013906859	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	AATAAA	-16	NA	91955806	91944651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_91945374_91948729_91948823_91948984_91949136_91953869_91954280_91955728
ENSMUSG00000021621.16_4	chr13	-	1446	5	ISM	ENSMUSG00000021621.16	ENSMUST00000022121.13	1541	6	1544	0	1500	0	3prime_fragment	FALSE	canonical	3	84	junction_2	32.5451609306207	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	AATAAA	-16	NA	91954280	91944651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_91945374_91946941_91947011_91948729_91948823_91948984_91949136_91953869
ENSMUSG00000021621.16_5	chr13	-	4971	3	NIC	ENSMUSG00000021621.16	novel	3421	4	NA	NA	18	0	intron_retention	FALSE	canonical	3	139	junction_2	8.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTTTGTTGAACTGATC	NA	False	NA	NA	False	AATAAA	-15	NA	91955806	91944652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_91949136_91953869_91954280_91955728
ENSMUSG00000021629.11_2	chr13	-	3165	16	FSM	ENSMUSG00000021629.11	ENSMUST00000067246.6	3179	16	3	11	3	-2	multi-exon	FALSE	canonical	3	198	junction_14	28.3666470818577	402	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTGGTAGTATTTGCA	NA	False	NA	-15	True	AATAAA	-8	NA	100969932	100939166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100939970_100940369_100940499_100943041_100943269_100945591_100945788_100947813_100947944_100949155_100949314_100949805_100950015_100950190_100950480_100951103_100951275_100953516_100953594_100954633_100954722_100957626_100957715_100961423_100961510_100962959_100963027_100965407_100965531_100969608
ENSMUSG00000021635.15_0	chr13	-	2701	17	FSM	ENSMUSG00000021635.15	ENSMUST00000177848.3	2392	17	3	-312	3	-3	multi-exon	FALSE	canonical	3	174	junction_16	17.1335516968899	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTTGTTCTTCTTATCC	NA	False	NA	-9	True	ATTAAA	-12	NA	100787552	100753674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787457
ENSMUSG00000021635.15_3	chr13	-	2827	17	FSM	ENSMUSG00000021635.15	ENSMUST00000022136.14	2839	17	11	1	7	-1	multi-exon	FALSE	canonical	3	38	junction_16	42.8397723354128	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTGTTCTTCTTATCCTT	NA	False	NA	-7	True	ATTAAA	-14	NA	100787548	100753672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787329
ENSMUSG00000021636.16_1	chr13	-	3351	7	FSM	ENSMUSG00000021636.16	ENSMUST00000225754.2	3111	7	-240	0	-12	0	multi-exon	FALSE	canonical	1	3	junction_4	3.97562014729219	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTGTGCTCCTTA	NA	False	NA	-3	True	ATTAAA	-16	NA	100753450	100732466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100733920_100734309_100734361_100736968_100737141_100737396_100737546_100744284_100744321_100747940_100749093_100753112
ENSMUSG00000021636.16_2	chr13	-	3016	6	ISM	ENSMUSG00000021636.16	ENSMUST00000225754.2	3111	7	4115	0	4115	0	3prime_fragment	FALSE	canonical	1	3	junction_4	4.35430821141545	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTGTGCTCCTTA	NA	False	NA	-3	True	ATTAAA	-16	NA	100749095	100732466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_100733920_100734309_100734361_100736968_100737141_100737396_100737546_100744284_100744321_100747940
ENSMUSG00000021636.16_3	chr13	-	3042	7	FSM	ENSMUSG00000021636.16	ENSMUST00000022137.14	3061	7	16	3	16	-1	multi-exon	FALSE	canonical	1	3	junction_4	4.71404520791032	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGTGTGTGCTCCTT	NA	False	NA	-4	True	ATTAAA	-15	NA	100753463	100732467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100733920_100734309_100734361_100736968_100737141_100737396_100737546_100744284_100744321_100747940_100749093_100753433
ENSMUSG00000021638.13_0	chr13	-	2727	9	NIC	ENSMUSG00000021638.13	novel	4052	9	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_8	21.5638586528478	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTGCTCATTTGATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	100688970	100634274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100688923
ENSMUSG00000021638.13_10	chr13	-	2213	7	ISM	ENSMUSG00000021638.13	ENSMUST00000022140.12	2839	9	13135	4	12877	0	3prime_fragment	FALSE	canonical	3	66	junction_5	5.29150262212918	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTGCTCATTTGATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	100676091	100634274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768
ENSMUSG00000021638.13_2	chr13	-	2753	9	FSM	ENSMUSG00000021638.13	ENSMUST00000069756.11	4052	9	39	1260	1	0	multi-exon	FALSE	canonical	3	42	junction_8	12.8640730330638	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTGCTCATTTGATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	100688967	100634274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100688894
ENSMUSG00000021638.13_5	chr13	-	2759	9	FSM	ENSMUSG00000021638.13	ENSMUST00000022140.12	2839	9	76	4	-19	0	multi-exon	FALSE	canonical	3	16	junction_8	20.6272726020674	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTGCTCATTTGATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	100689150	100634274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100689071
ENSMUSG00000021638.13_7	chr13	-	1963	7	NIC	ENSMUSG00000021638.13	novel	1950	7	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	28.3705637746043	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTGCTCATTTGATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	100688967	100634274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100688894
ENSMUSG00000021638.13_9	chr13	-	2769	9	FSM	ENSMUSG00000021638.13	ENSMUST00000160859.8	2443	9	21	-347	0	0	multi-exon	FALSE	canonical	0	0	junction_8	25.6706909723911	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTGCTCATTTGATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	100688968	100634274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100688879
ENSMUSG00000021639.18_1	chr13	-	1972	17	NIC	ENSMUSG00000021639.18	novel	1630	18	NA	NA	6	436	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	76.8251871133419	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACAACTGT	NA	False	NA	NA	False	NA	NA	NA	100629081	100596289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_100596929_100605422_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
ENSMUSG00000021639.18_12	chr13	-	1461	16	ISM	ENSMUSG00000021639.18	ENSMUST00000145266.8	1630	18	-37	8585	-1	5	5prime_fragment	FALSE	canonical	3	30	junction_15	76.4776219992925	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAGCACTTTGAAAGAA	NA	False	NA	-14	True	AATAAA	-37	NA	100628883	100605310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628750
ENSMUSG00000021639.18_8	chr13	-	1456	16	FSM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	-20	220	-2	8	multi-exon	FALSE	canonical	3	225	junction_10	29.724213848122	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCACTTTGAAAGAAGAT	NA	False	NA	-11	True	AATAAA	-40	NA	100629089	100605307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
ENSMUSG00000021643.16_0	chr13	+	532	3	FSM	ENSMUSG00000021643.16	ENSMUST00000022145.15	601	3	62	7	-11	0	multi-exon	FALSE	canonical	3	69	junction_1	3	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTATTGGTGAATATTA	NA	False	NA	NA	False	AATAAA	-18	NA	100244581	100250739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_100244738_100245530_100245640_100250472
ENSMUSG00000021645.17_0	chr13	+	1202	9	FSM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	20	0	14	0	multi-exon	TRUE	canonical	3	544	junction_6	97.8154352594722	465	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTGACTTTATAGATA	NA	False	NA	17	True	AATAAA	-13	NA	100261379	100274198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
ENSMUSG00000021646.10_2	chr13	-	2102	17	FSM	ENSMUSG00000021646.10	ENSMUST00000022148.7	2123	17	21	0	0	0	multi-exon	FALSE	canonical	2	186	junction_5	41.3428878405948	309	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTAGGGTTGTTGAGA	690	False	NA	-6	True	AATAAA	-15	NA	100152126	100085040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100085465_100088663_100088750_100090643_100090759_100091122_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127719_100127822_100130074_100130160_100136757_100136825_100151893
ENSMUSG00000021650.8_0	chr13	-	1676	10	FSM	ENSMUSG00000021650.8	ENSMUST00000022153.8	1704	10	23	5	23	-5	multi-exon	FALSE	canonical	3	306	junction_5	28.5894740191448	346	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGACTCGGGTTGTGTTTC	NA	False	NA	-16	True	AATAAA	-11	NA	99481190	99456159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_99456902_99458068_99458183_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
ENSMUSG00000021660.15_0	chr13	-	858	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	26	4	-13	-3	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	2271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATATGGTTTATCATTTT	NA	False	NA	-21	True	AATAAA	-32	NA	98453488	98446408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
ENSMUSG00000021660.15_1	chr13	-	889	6	FSM	ENSMUSG00000021660.15	ENSMUST00000022163.15	1091	6	197	5	197	-3	multi-exon	FALSE	canonical	3	579	junction_5	2432.68485422999	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATATGGTTTATCATTTT	NA	False	NA	-21	True	AATAAA	-32	NA	98453278	98446408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453132
ENSMUSG00000021661.17_0	chr13	+	1843	9	FSM	ENSMUSG00000021661.17	ENSMUST00000022164.16	1755	9	-94	6	-9	-6	multi-exon	FALSE	canonical	3	142	junction_1	23.3559414282533	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTAGCTCTGATTATATG	NA	False	NA	8	True	AATAAA	-18	NA	98399655	98410420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
ENSMUSG00000021661.17_1	chr13	+	2371	8	FSM	ENSMUSG00000021661.17	ENSMUST00000123924.8	2328	8	-51	8	4	-8	multi-exon	TRUE	canonical	3	142	junction_1	24.7839645327212	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTCTAGCTCTGATTATA	NA	False	NA	6	True	AATAAA	-16	NA	98399650	98410418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
ENSMUSG00000021661.17_2	chr13	+	1465	8	FSM	ENSMUSG00000021661.17	ENSMUST00000226100.2	1476	8	5	6	5	-6	multi-exon	FALSE	canonical	3	36	junction_1	57.4651624722247	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTAGCTCTGATTATATG	NA	False	NA	8	True	AATAAA	-18	NA	98399651	98410420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_98399985_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
ENSMUSG00000021661.17_5	chr13	+	3153	7	NIC	ENSMUSG00000021661.17	novel	2328	8	NA	NA	8	-5	intron_retention	FALSE	canonical	3	142	junction_1	23.1276650116022	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGCTCTGATTATATGC	NA	False	NA	9	True	AATAAA	-19	NA	98399654	98410421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_98399985_98402658_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
ENSMUSG00000021665.10_0	chr13	-	1782	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	33	90	-29	-90	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	2584	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATCTTTCTATCCCTG	NA	False	NA	-24	True	AATAAA	-15	NA	97334832	97312928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021666.17_0	chr13	+	3120	21	FSM	ENSMUSG00000021666.17	ENSMUST00000161639.8	3157	21	23	14	-1	-4	multi-exon	FALSE	canonical	3	138	junction_1	31.6045487232455	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTAAAAAAAAAACAGCCT	NA	False	NA	NA	False	AATAAA	-11	NA	97274508	97312945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
ENSMUSG00000021666.17_1	chr13	+	3103	21	NIC	ENSMUSG00000021666.17	novel	3157	21	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	50	junction_1	43.0145033680502	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTAAAAAAAAAACAGCCT	NA	False	NA	NA	False	AATAAA	-11	NA	97274492	97312945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_97274535_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
ENSMUSG00000021666.17_5	chr13	+	3046	20	NIC	ENSMUSG00000021666.17	novel	3157	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_10	51.7295331347379	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAACAGCCTAACA	NA	False	NA	NA	False	AATAAA	-15	NA	97274505	97312949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
ENSMUSG00000021668.16_1	chr13	-	3308	14	NIC	ENSMUSG00000021668.16	novel	4225	15	NA	NA	-3	-5	combination_of_known_junctions	FALSE	canonical	3	4	junction_2	10.888352171828	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTACACTTATTGACTGT	NA	False	NA	NA	False	AATAAA	-15	NA	96678996	96617202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_96618763_96618965_96619000_96623315_96623488_96625689_96625787_96627444_96627478_96630336_96630504_96631915_96632041_96633110_96633351_96638026_96638181_96641018_96641151_96644719_96644873_96653146_96653267_96655536_96655696_96678834
ENSMUSG00000021668.16_10	chr13	-	1496	1	ISM	ENSMUSG00000021668.16	ENSMUST00000022172.12	4225	15	60299	1	7605	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACTTATTGACTGTCATA	NA	False	NA	NA	False	AATAAA	-19	NA	96618694	96617198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_96617200_96618700
ENSMUSG00000021668.16_29	chr13	-	2533	13	NIC	ENSMUSG00000021668.16	novel	4225	15	NA	NA	-1	-31	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	11.6749970259335	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAAATAGTGAAGGTAAT	NA	False	NA	NA	False	AATAAA	-17	NA	96678994	96620055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_96620914_96623352_96623488_96625689_96625787_96627444_96627478_96630336_96630504_96631915_96632041_96633110_96633351_96638026_96638181_96641018_96641151_96644719_96644873_96653146_96653267_96655536_96655696_96678834
ENSMUSG00000021668.16_4	chr13	-	4235	15	FSM	ENSMUSG00000021668.16	ENSMUST00000022172.12	4225	15	-11	1	-11	-1	multi-exon	FALSE	canonical	3	26	junction_7	5.85191404236116	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACTTATTGACTGTCATA	NA	False	NA	NA	False	AATAAA	-19	NA	96679004	96617198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_96618763_96618965_96619000_96619998_96620914_96623315_96623488_96625689_96625787_96627444_96627478_96630336_96630504_96631915_96632041_96633110_96633351_96638026_96638181_96641018_96641151_96644719_96644873_96653146_96653267_96655536_96655696_96678834
ENSMUSG00000021668.16_5	chr13	-	4192	15	NIC	ENSMUSG00000021668.16	novel	4225	15	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	11.022240966263	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTATTGACTGTCATAT	NA	False	NA	NA	False	AATAAA	-20	NA	96678997	96617197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_96618763_96618965_96619000_96619998_96620914_96623352_96623488_96625689_96625787_96627444_96627478_96630336_96630504_96631915_96632041_96633110_96633351_96638026_96638181_96641018_96641151_96644719_96644873_96653146_96653267_96655536_96655696_96678834
ENSMUSG00000021668.16_8	chr13	-	2807	6	ISM	ENSMUSG00000021668.16	ENSMUST00000091387.4	2382	14	28193	-1473	-1176	-7	3prime_fragment	FALSE	canonical	3	35	junction_4	2.48193472919817	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCTACACTTATTGACT	NA	False	NA	NA	False	AATAAA	-13	NA	96627475	96617204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_96618763_96618965_96619000_96619998_96620914_96623315_96623488_96625689_96625787_96627444
ENSMUSG00000021668.16_9	chr13	-	2350	3	ISM	ENSMUSG00000021668.16	ENSMUST00000091387.4	2382	14	34919	-1480	5550	0	3prime_fragment	FALSE	canonical	3	41	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTATTGACTGTCATAT	NA	False	NA	NA	False	AATAAA	-20	NA	96620749	96617197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_96618763_96618965_96619000_96619998
ENSMUSG00000021669.16_0	chr13	+	3116	17	FSM	ENSMUSG00000021669.16	ENSMUST00000109444.3	5285	17	12	2157	1	-5	multi-exon	FALSE	canonical	3	32	junction_10	9.39081998549647	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAATCAGACTGTTTG	NA	False	NA	NA	False	AATATA	-15	NA	96679254	96774518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_96679768_96685704_96685840_96708418_96708536_96734712_96734821_96735897_96736037_96739580_96739665_96746281_96746440_96748768_96748862_96751281_96751369_96752964_96753058_96761202_96761299_96765520_96765654_96767268_96767340_96770580_96770710_96771361_96771492_96772257_96772395_96773625
ENSMUSG00000021669.16_1	chr13	+	3199	18	FSM	ENSMUSG00000021669.16	ENSMUST00000077672.12	2746	18	12	-465	1	0	multi-exon	FALSE	canonical	3	25	junction_11	11.3473012507266	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAGACTGTTTGAATTT	NA	False	NA	NA	False	AATATA	-20	NA	96679254	96774523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_96679768_96685704_96685840_96708418_96708536_96734712_96734821_96735897_96736037_96739580_96739665_96746281_96746440_96748768_96748862_96751281_96751369_96752964_96753058_96753501_96753580_96761202_96761299_96765520_96765654_96767268_96767340_96770580_96770710_96771361_96771492_96772257_96772395_96773625
ENSMUSG00000021669.16_9	chr13	+	1173	1	ISM	ENSMUSG00000021669.16	ENSMUST00000109444.3	5285	17	96250	10	4685	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGCTCACTTGCTTGAT	NA	False	NA	NA	False	ATTAAA	-39	NA	96775492	96776665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_96775500_96776700
ENSMUSG00000021670.15_1	chr13	-	4354	20	FSM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	64	7	3	-7	multi-exon	FALSE	canonical	3	390	junction_19	35.2932314809179	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACATTGAAAAGTGTAAGC	NA	False	NA	-12	True	AGTAAA	-15	NA	96807380	96785481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
ENSMUSG00000021670.15_4	chr13	-	4290	19	ISM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	4226	11	0	-11	3prime_fragment	FALSE	canonical	3	414	junction_4	30.4311102185872	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTTAACATTGAAAAGTGT	NA	False	NA	-16	True	AGTAAA	-11	NA	96803218	96785485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028
ENSMUSG00000021671.10_19	chr13	+	1523	1	NIC	ENSMUSG00000021671.10	novel	5183	13	NA	NA	-483	-1614	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGTGATGTAAGTAGAAT	7479	False	NA	6	True	AATAAA	-18	NA	96550557	96552080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_96550600_96552100
ENSMUSG00000021671.10_3	chr13	+	2279	13	FSM	ENSMUSG00000021671.10	ENSMUST00000099295.6	5183	13	31	2873	31	-2322	multi-exon	FALSE	canonical	3	109	junction_9	14.0798812337163	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATGTACAGCCTGCCAG	NA	False	NA	NA	False	ATTAAA	-24	NA	96524832	96551372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_96525040_96526730_96526871_96528095_96528184_96529734_96529853_96530999_96531078_96533147_96533339_96535201_96535379_96537257_96537363_96538083_96538264_96539387_96539542_96540913_96541192_96547097_96547275_96550986
ENSMUSG00000021676.11_0	chr13	-	5843	36	FSM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	-2	6	-2	-6	multi-exon	FALSE	canonical	3	39	junction_26	10.4750042618471	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAATGTGGTAGAGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	96028505	95763687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_95764629_95765454_95765564_95766496_95766635_95768531_95768693_95771971_95772185_95774225_95774314_95783269_95783412_95784685_95784789_95794310_95794444_95796625_95796859_95797506_95797592_95798094_95798236_95800570_95800796_95802100_95802265_95804875_95805026_95807736_95807946_95809492_95809563_95810192_95810265_95811821_95811906_95818660_95818832_95819417_95819561_95821361_95821530_95826208_95826300_95844385_95844550_95852564_95852690_95858020_95858182_95861053_95861218_95865970_95866059_95867787_95867967_95869398_95869513_95870391_95870460_95882945_95883023_95886500_95886579_95899753_95899911_95974331_95974432_96028171
ENSMUSG00000021676.11_1	chr13	-	3914	22	ISM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	207003	6	-2055	-6	3prime_fragment	FALSE	canonical	3	48	junction_11	9.63906450989153	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAATGTGGTAGAGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	95821500	95763687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_95764629_95765454_95765564_95766496_95766635_95768531_95768693_95771971_95772185_95774225_95774314_95783269_95783412_95784685_95784789_95794310_95794444_95796625_95796859_95797506_95797592_95798094_95798236_95800570_95800796_95802100_95802265_95804875_95805026_95807736_95807946_95809492_95809563_95810192_95810265_95811821_95811906_95818660_95818832_95819417_95819561_95821361
ENSMUSG00000021678.10_1	chr13	-	2737	2	FSM	ENSMUSG00000021678.10	ENSMUST00000022185.10	2741	2	4	0	4	0	multi-exon	FALSE	canonical	3	40	junction_1	0	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACAAGTT	9830	False	NA	NA	False	AATAAA	-16	NA	95661731	95648239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_95650790_95661544
ENSMUSG00000021678.10_2	chr13	-	1385	1	ISM	ENSMUSG00000021678.10	ENSMUST00000022185.10	2741	2	12111	0	12111	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACAAGTT	9719	False	NA	NA	False	AATAAA	-16	NA	95649624	95648239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_95648200_95649600
ENSMUSG00000021680.9_0	chr13	-	1376	6	ISM	ENSMUSG00000021680.9	ENSMUST00000045583.9	1701	7	634	0	634	0	3prime_fragment	FALSE	canonical	1	1	junction_1	0.748331477354788	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTCTCGACTGTCTGATG	NA	False	NA	NA	False	AATAAA	-16	NA	95580705	95567884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_95568603_95572912_95573031_95576575_95576725_95578575_95578787_95580244_95580403_95580683
ENSMUSG00000021681.9_0	chr13	-	3225	14	FSM	ENSMUSG00000021681.9	ENSMUST00000022189.9	3249	14	13	11	-5	-11	multi-exon	FALSE	canonical	3	209	junction_4	22.6835706778766	591	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAACATATTGGTCTTC	NA	False	NA	16	True	AATAAA	-39	NA	95511847	95487201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_95488211_95489254_95489355_95490457_95490586_95492900_95492984_95493704_95493871_95495217_95495320_95498976_95499029_95499344_95499457_95501188_95501511_95504887_95505077_95505904_95506067_95507264_95507468_95508048_95508152_95511353
ENSMUSG00000021684.18_0	chr13	-	2405	4	ISM	ENSMUSG00000021684.18	ENSMUST00000162882.2	2060	9	12897	-867	1084	-4	3prime_fragment	TRUE	canonical	1	2	junction_3	2.44948974278318	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCAAATTTGGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	95169677	95160970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_95162738_95164125_95164256_95166820_95166989_95169337
ENSMUSG00000021686.7_0	chr13	+	3979	27	FSM	ENSMUSG00000021686.7	ENSMUST00000022196.5	4021	27	34	8	34	-4	multi-exon	FALSE	canonical	3	310	junction_8	45.9393251760748	853	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGCATTTGCCTCTCCTA	NA	False	NA	1	True	AATAAA	-11	NA	94495501	94702817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
ENSMUSG00000021687.15_0	chr13	-	1608	1	ISM	ENSMUSG00000021687.15	ENSMUST00000022197.15	4259	9	82787	125	43516	-125	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTGTTTGTATAATTT	NA	False	NA	-3	True	AATAAA	-14	NA	94339550	94337942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_94337900_94339600
ENSMUSG00000021687.15_2	chr13	-	3684	9	FSM	ENSMUSG00000021687.15	ENSMUST00000022197.15	4259	9	450	125	450	-125	multi-exon	FALSE	canonical	3	91	junction_5	9.45300878027732	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTGTTTGTATAATTT	NA	False	NA	-3	True	AATAAA	-14	NA	94421887	94337942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_94340672_94344643_94344762_94347084_94347187_94361402_94361563_94366221_94366351_94368579_94368689_94369589_94369689_94389500_94389579_94421727
ENSMUSG00000021690.11_0	chr13	-	3218	1	ISM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	66488	2	66417	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAACTTGATTTTGTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	93569828	93566610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_93566600_93569800
ENSMUSG00000021690.11_2	chr13	-	4053	11	FSM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	1462	3261	1391	-3261	multi-exon	TRUE	canonical	0	0	junction_8	1.62788205960997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCCATTGTGTTGTACT	2949	False	NA	NA	False	AATATA	-8	NA	93634854	93569869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_93571928_93575946_93576258_93577522_93578130_93579093_93579190_93589314_93589402_93589895_93590084_93590435_93590602_93596127_93596298_93601074_93601226_93609128_93609303_93634809
ENSMUSG00000021690.11_4	chr13	-	5527	2	ISM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	60161	1	60090	-1	3prime_fragment	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAACTTGATTTTGTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	93576155	93566609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_93571928_93575946
ENSMUSG00000021692.10_0	chr13	+	1220	12	FSM	ENSMUSG00000021692.10	ENSMUST00000022203.10	2051	12	-13	844	-9	-844	multi-exon	FALSE	canonical	3	504	junction_4	50.5395680025492	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGACCTAGTGTTTTATA	NA	False	NA	11	True	NA	NA	NA	107083653	107095424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUSG00000021692.10_2	chr13	+	2057	10	FSM	ENSMUSG00000021692.10	ENSMUST00000223870.2	3338	10	-32	1313	-9	-849	multi-exon	FALSE	canonical	3	551	junction_4	41.347966346456	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGTAGACCTAGTGTT	NA	False	NA	6	True	NA	NA	NA	107083653	107095419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_107083792_107084093_107084168_107085208_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUSG00000021692.10_5	chr13	+	1296	11	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	-10	-844	intron_retention	TRUE	canonical	3	551	junction_5	39.2372272210971	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGACCTAGTGTTTTATA	NA	False	NA	11	True	NA	NA	NA	107083652	107095424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUSG00000021693.21_0	chr13	-	578	1	ISM	ENSMUSG00000021693.21	ENSMUST00000022204.16	5304	20	60959	1586	15959	678	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATAATGTACTTCAATA	NA	False	NA	3	True	AATAAA	-22	NA	107097667	107097089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_107097100_107097700
ENSMUSG00000021693.21_1	chr13	-	2900	12	ISM	ENSMUSG00000021693.21	ENSMUST00000117423.9	2023	20	14126	-1528	-5512	665	3prime_fragment	FALSE	canonical	3	95	junction_4	18.0797133013179	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAAACGAATTTAGAAATA	NA	False	NA	-10	True	AATAAA	-9	NA	107119138	107097102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107113163_107113369_107113493_107113637_107114531_107114624_107115479_107115544_107115984_107116076_107119031
ENSMUSG00000021693.21_10	chr13	-	2275	7	ISM	ENSMUSG00000021693.21	ENSMUST00000117423.9	2023	20	20024	-1528	386	665	3prime_fragment	FALSE	canonical	3	95	junction_4	19.5419776094665	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAAACGAATTTAGAAATA	NA	False	NA	-10	True	AATAAA	-9	NA	107113240	107097102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107113163
ENSMUSG00000021693.21_12	chr13	-	1771	2	ISM	ENSMUSG00000021693.21	ENSMUST00000117423.9	2023	20	32278	-1531	12640	668	3prime_fragment	FALSE	canonical	3	138	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACGAATTTAGAAATAATG	NA	False	NA	-7	True	AATAAA	-12	NA	107100986	107097099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_107098733_107100848
ENSMUSG00000021693.21_13	chr13	-	2529	8	ISM	ENSMUSG00000021693.21	ENSMUST00000117423.9	2023	20	19648	-1531	10	668	3prime_fragment	FALSE	canonical	3	95	junction_4	20.1474158975026	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACGAATTTAGAAATAATG	NA	False	NA	-7	True	AATAAA	-12	NA	107113616	107097099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107113163_107113369_107113493
ENSMUSG00000021693.21_2	chr13	-	3094	20	NIC	ENSMUSG00000021693.21	novel	5304	20	NA	NA	-212	-109	combination_of_known_junctions	FALSE	canonical	3	22	junction_15	27.307624781206	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTAAAATATGAATTAGTTG	NA	False	NA	NA	False	NA	NA	NA	107158846	107097876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107113163_107113369_107113493_107113637_107114531_107114624_107115479_107115544_107115984_107116076_107119031_107119195_107119699_107119755_107121571_107121668_107123776_107123878_107124517_107124584_107126545_107126601_107129670_107129788_107130355_107130451_107158519
ENSMUSG00000021693.21_3	chr13	-	2685	20	FSM	ENSMUSG00000021693.21	ENSMUST00000022204.16	5304	20	-237	2856	-229	0	multi-exon	FALSE	canonical	3	48	junction_15	23.883141169724	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCTTGCCAATTTTATT	NA	False	NA	-2	True	AATAAA	-17	NA	107158863	107098359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107113163_107113369_107113493_107113637_107114531_107114624_107115479_107115544_107115984_107116076_107119031_107119195_107119699_107119755_107121571_107121668_107123776_107123878_107124460_107124584_107126545_107126601_107129670_107129788_107130355_107130451_107158519
ENSMUSG00000021693.21_5	chr13	-	1794	14	ISM	ENSMUSG00000021693.21	ENSMUST00000117423.9	2023	20	11653	-271	-7985	0	3prime_fragment	FALSE	canonical	3	85	junction_12	19.440700306377	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCTTGCCAATTTTATT	NA	False	NA	-2	True	AATAAA	-17	NA	107121611	107098359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107113163_107113369_107113493_107113637_107114531_107114624_107115479_107115544_107115984_107116076_107119031_107119195_107119699_107119755_107121571
ENSMUSG00000021694.19_0	chr13	+	1634	12	FSM	ENSMUSG00000021694.19	ENSMUST00000054835.15	2111	12	3	474	3	-466	multi-exon	FALSE	canonical	3	49	junction_3	12.8281714780819	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAGAACTTGTCTCCTTG	NA	False	NA	10	True	AATATA	-19	NA	108295274	108331045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUSG00000021694.19_16	chr13	+	841	4	ISM	ENSMUSG00000021694.19	ENSMUST00000152634.8	2095	12	19836	478	19786	-470	3prime_fragment	FALSE	canonical	3	72	junction_1	3.09120616516523	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAATCAGAACTTGTCTC	NA	False	NA	6	True	AATATA	-15	NA	108315123	108331041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUSG00000021694.19_5	chr13	+	1631	12	FSM	ENSMUSG00000021694.19	ENSMUST00000152634.8	2095	12	-14	478	2	-470	multi-exon	FALSE	canonical	0	0	junction_7	31.8161038282489	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAATCAGAACTTGTCTC	NA	False	NA	6	True	AATATA	-15	NA	108295273	108331041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108312338_108312441_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUSG00000021694.19_6	chr13	+	1737	13	NIC	ENSMUSG00000021694.19	novel	2111	12	NA	NA	2	-466	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	29.7918706286724	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAGAACTTGTCTCCTTG	NA	False	NA	10	True	AATATA	-19	NA	108295273	108331045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108312338_108312441_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUSG00000021694.19_7	chr13	+	1534	11	FSM	ENSMUSG00000021694.19	ENSMUST00000123657.8	2395	11	10	851	3	-464	multi-exon	FALSE	canonical	3	37	junction_2	15.1489273547667	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACTTGTCTCCTTGAG	NA	False	NA	12	True	AATATA	-21	NA	108295274	108331047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUSG00000021696.10_0	chr13	+	3378	8	FSM	ENSMUSG00000021696.10	ENSMUST00000022207.10	4013	8	8	627	2	-627	multi-exon	FALSE	canonical	0	0	junction_3	37.4045724586758	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGGACATGTGTGTGTG	NA	False	NA	10	True	AATAAA	-11	NA	108350945	108421590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_108351035_108393200_108393333_108403723_108403915_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
ENSMUSG00000021696.10_10	chr13	+	2286	1	ISM	ENSMUSG00000021696.10	ENSMUST00000022207.10	4013	8	68985	9	68979	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAATAATTTTGTCA	NA	False	NA	NA	False	NA	NA	NA	108419922	108422208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_108419900_108422200
ENSMUSG00000021696.10_2	chr13	+	3348	8	FSM	ENSMUSG00000021696.10	ENSMUST00000225550.2	2351	8	-11	-986	-5	-624	multi-exon	FALSE	canonical	3	9	junction_3	34.299997025049	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGACATGTGTGTGTGTGT	NA	False	NA	13	True	AATAAA	-14	NA	108350932	108421593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_108351035_108393200_108393333_108403723_108403869_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
ENSMUSG00000021697.13_0	chr13	+	2508	11	FSM	ENSMUSG00000021697.13	ENSMUST00000051594.12	2563	11	29	26	-7	-26	multi-exon	FALSE	canonical	3	89	junction_3	8.78009111570034	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATATATATATATATAT	2876	False	NA	13	True	AATAAA	-20	NA	108452894	108526093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_108453004_108460439_108460706_108493927_108494064_108498768_108498897_108500066_108500198_108505346_108505395_108510246_108510388_108519289_108519457_108521259_108521437_108523368_108523555_108525074
ENSMUSG00000021699.18_0	chr13	+	2932	15	FSM	ENSMUSG00000021699.18	ENSMUST00000135275.8	2123	15	-161	-648	-161	538	multi-exon	TRUE	canonical	1	3	junction_1	7.84544583871199	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAAACAAAACTCT	NA	False	NA	NA	False	ATTAAA	-21	NA	109769152	110088546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_109769445_109876920_109877113_109894110_109894148_109906067_109906142_109909164_109909215_110040110_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500_110074666_110075795_110075896_110084773_110084929_110085947_110086071_110086742_110086926_110087464
ENSMUSG00000021699.18_3	chr13	+	3366	15	FSM	ENSMUSG00000021699.18	ENSMUST00000074103.12	2167	15	-637	-562	-637	562	multi-exon	FALSE	canonical	2	10	junction_1	6.47640931002824	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTCATCTACCACTGG	NA	False	NA	NA	False	ATTAAA	-45	NA	109822052	110088570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_109822755_109876920_109877113_109894110_109894148_109906067_109906142_109909164_109909215_110040110_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500_110074666_110075795_110075896_110084773_110084929_110085947_110086071_110086742_110086926_110087464
ENSMUSG00000021699.18_5	chr13	+	2815	10	FSM	ENSMUSG00000021699.18	ENSMUST00000120664.8	4207	10	-27	1419	-23	568	multi-exon	FALSE	canonical	3	22	junction_7	3.99382239013587	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTACCACTGGTTTTTG	NA	False	NA	NA	False	TTTAAA	-28	NA	110039612	110088576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500_110074666_110075795_110075896_110084773_110084929_110085947_110086071_110086742_110086926_110087464
ENSMUSG00000021699.18_6	chr13	+	3152	11	FSM	ENSMUSG00000021699.18	ENSMUST00000119672.8	2051	11	-452	-649	-452	562	multi-exon	FALSE	canonical	3	11	junction_1	6.78896162899747	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTCATCTACCACTGG	NA	False	NA	NA	False	ATTAAA	-45	NA	110039183	110088570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_110040025_110040110_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500_110074666_110075795_110075896_110084773_110084929_110085947_110086071_110086742_110086926_110087464
ENSMUSG00000021701.9_0	chr13	+	2788	14	FSM	ENSMUSG00000021701.9	ENSMUST00000022212.9	2800	14	3	9	1	-9	multi-exon	FALSE	canonical	3	65	junction_2	11.0769230769231	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGAAACAGTGGTCTCC	NA	False	NA	-3	True	AATAAA	-8	NA	110531582	110537369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_110531972_110532548_110532657_110532809_110532927_110533124_110533255_110533440_110533529_110534004_110534101_110534221_110534421_110534507_110534656_110534906_110535005_110535212_110535343_110535554_110535796_110535913_110536044_110536296_110536408_110536566
ENSMUSG00000021703.10_0	chr13	+	5360	12	FSM	ENSMUSG00000021703.10	ENSMUST00000049488.9	5366	12	1	5	1	-5	multi-exon	FALSE	canonical	3	40	junction_8	5.03377025451168	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATCATGTTGTTTGTTT	NA	False	NA	0	True	AATAAA	-10	NA	92747599	92848450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_92747796_92797525_92797694_92819262_92819445_92819863_92819947_92821652_92821747_92825126_92825339_92827451_92827548_92829979_92830107_92838184_92838252_92842018_92842059_92842647_92842793_92844500
ENSMUSG00000021703.10_6	chr13	+	2518	1	ISM	ENSMUSG00000021703.10	ENSMUST00000049488.9	5366	12	98334	5	3643	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATCATGTTGTTTGTTT	1162	False	NA	0	True	AATAAA	-10	NA	92845932	92848450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_92845900_92848400
ENSMUSG00000021704.9_0	chr13	+	3560	1	ISM	ENSMUSG00000021704.9	ENSMUST00000076169.4	6275	9	9868	16	9457	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGACTGTTTGTTAATTCT	NA	False	NA	11	True	AATAAA	-12	NA	92991162	92994722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_92991200_92994700
ENSMUSG00000021706.15_0	chr13	-	5886	18	FSM	ENSMUSG00000021706.15	ENSMUST00000022217.9	6150	18	49	215	49	-215	multi-exon	FALSE	canonical	3	21	junction_14	7.96662588726756	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTATCAGGAAGTCACACT	NA	False	NA	NA	False	ATTAAA	-13	NA	92667327	92623830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_92625132_92629010_92629179_92630365_92630472_92631442_92631606_92636720_92636802_92640446_92640595_92640983_92641089_92642167_92642251_92644629_92644855_92645398_92645555_92646508_92646632_92647985_92648365_92650294_92650438_92653038_92653201_92655974_92656072_92657623_92659840_92660737_92660847_92667206
ENSMUSG00000021706.15_1	chr13	-	1766	1	Genic_Genomic	ENSMUSG00000021706.15	novel	NA	NA	NA	NA	21936	1213	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTATTCTAGGTTTGATAT	NA	False	NA	NA	False	AATAAA	-14	NA	92624168	92622402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_92622400_92624200
ENSMUSG00000021706.15_10	chr13	-	5850	18	NIC	ENSMUSG00000021706.15	novel	6150	18	NA	NA	50	-195	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	11.143604928202	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAACTCTGTGTAAGAAG	NA	False	NA	NA	False	ATTAAA	-33	NA	92667326	92623810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_92625132_92629010_92629179_92630365_92630472_92631442_92631606_92636720_92636802_92640446_92640595_92640983_92641089_92642167_92642251_92644629_92644800_92645398_92645555_92646508_92646632_92647985_92648365_92650294_92650438_92653038_92653201_92655974_92656072_92657623_92659840_92660737_92660847_92667206
ENSMUSG00000021706.15_2	chr13	-	5725	17	NIC	ENSMUSG00000021706.15	novel	6150	18	NA	NA	48	-215	combination_of_known_junctions	FALSE	canonical	2	7	junction_13	9.64931992422264	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTATCAGGAAGTCACACT	NA	False	NA	NA	False	ATTAAA	-13	NA	92667328	92623830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_92625132_92629010_92629179_92630365_92630472_92631442_92631606_92636720_92636802_92640446_92640595_92640983_92641089_92642167_92642251_92644629_92644855_92645398_92645555_92646508_92646632_92647985_92648365_92650294_92650438_92655974_92656072_92657623_92659840_92660737_92660847_92667206
ENSMUSG00000021706.15_4	chr13	-	4549	16	ISM	ENSMUSG00000021706.15	ENSMUST00000022217.9	6150	18	8828	31	-382	-31	3prime_fragment	FALSE	canonical	3	21	junction_14	8.3495841546484	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGATGTAATATAAAGAT	NA	False	NA	NA	False	AATAAA	-13	NA	92658548	92623646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_92625132_92629010_92629179_92630365_92630472_92631442_92631606_92636720_92636802_92640446_92640595_92640983_92641089_92642167_92642251_92644629_92644855_92645398_92645555_92646508_92646632_92647985_92648365_92650294_92650438_92653038_92653201_92655974_92656072_92657623
ENSMUSG00000021707.6_1	chr13	+	1531	6	FSM	ENSMUSG00000021707.6	ENSMUST00000022218.6	5347	6	422	3394	422	-3394	multi-exon	FALSE	canonical	3	1135	junction_5	174.184270242752	712	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAAAAAATGAGCAT	NA	False	NA	-11	True	ACTAAA	-7	NA	92491655	92522167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
ENSMUSG00000021709.15_12	chr13	-	1720	1	ISM	ENSMUSG00000021709.15	ENSMUST00000022222.12	6369	26	100002	6	68780	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCGAGTCTTGGTGTTGC	NA	False	NA	-7	True	NA	NA	NA	103957020	103955300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_103955300_103957000
ENSMUSG00000021709.15_15	chr13	-	3208	4	ISM	ENSMUSG00000021709.15	ENSMUST00000188997.7	5084	24	85772	-814	54769	-2	3prime_fragment	FALSE	canonical	3	24	junction_3	31.6262900483478	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCGAGTCTTGGTGTTGC	NA	False	NA	-7	True	NA	NA	NA	103971031	103955300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_103957315_103959318_103959394_103959821_103959915_103970005
ENSMUSG00000021709.15_18	chr13	-	3146	6	ISM	ENSMUSG00000021709.15	ENSMUST00000091269.11	6224	26	86158	2	55155	-2	3prime_fragment	FALSE	canonical	3	35	junction_5	23.8796984905589	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCGAGTCTTGGTGTTGC	NA	False	NA	-7	True	NA	NA	NA	103970645	103955300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_103957315_103959318_103959394_103959821_103959915_103961227_103961435_103964414_103964532_103970005
ENSMUSG00000021709.15_3	chr13	-	6315	24	FSM	ENSMUSG00000021709.15	ENSMUST00000188997.7	5084	24	-417	-814	-198	-2	multi-exon	FALSE	canonical	3	24	junction_3	14.3384686218459	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCGAGTCTTGGTGTTGC	NA	False	NA	-7	True	NA	NA	NA	104057220	103955300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_103957315_103959318_103959394_103959821_103959915_103970005_103971537_103975814_103975999_103977661_103977777_103979964_103980142_103981321_103981496_103982011_103982134_103987252_103987353_103991326_103991397_103993502_103993619_103993918_103994049_103994358_103994432_103995883_103996029_103996578_103996654_103998787_103998852_104003156_104003214_104004550_104004641_104005327_104005407_104020650_104020769_104022648_104022847_104025745_104025794_104056753
ENSMUSG00000021709.15_7	chr13	-	6863	26	FSM	ENSMUSG00000021709.15	ENSMUST00000091269.11	6224	26	-641	2	-422	-2	multi-exon	FALSE	canonical	3	35	junction_5	14.0566852422611	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCGAGTCTTGGTGTTGC	NA	False	NA	-7	True	NA	NA	NA	104057444	103955300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_103957315_103959318_103959394_103959821_103959915_103961227_103961435_103964414_103964532_103970005_103971537_103975814_103975999_103977661_103977777_103979964_103980142_103981321_103981496_103982011_103982134_103987252_103987353_103991326_103991397_103993502_103993619_103993918_103994049_103994358_103994432_103995883_103996029_103996578_103996654_103998787_103998852_104003156_104003214_104004550_104004641_104005327_104005407_104020650_104020769_104022648_104022847_104025745_104025794_104056753
ENSMUSG00000021709.15_8	chr13	-	6446	25	NIC	ENSMUSG00000021709.15	novel	6224	26	NA	NA	-122	-2	combination_of_known_splicesites	FALSE	canonical	3	6	junction_4	17.3060181407766	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCGAGTCTTGGTGTTGC	NA	False	NA	-7	True	NA	NA	NA	104057144	103955300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_103957315_103959318_103959394_103959821_103959915_103961227_103961435_103970005_103971537_103975814_103975999_103977661_103977777_103979964_103980142_103981321_103981496_103982011_103982134_103987252_103987353_103991326_103991397_103993502_103993619_103993918_103994049_103994358_103994432_103995883_103996029_103996578_103996654_103998787_103998852_104003156_104003214_104004550_104004641_104005327_104005407_104020650_104020769_104022648_104022847_104025745_104025794_104056753
ENSMUSG00000021710.12_2	chr13	-	2528	13	FSM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	9	1625	9	-97	multi-exon	TRUE	canonical	3	279	junction_1	22.4276614920058	521	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTTGATTTTTTTACTG	NA	False	NA	-2	True	CATAAA	-40	NA	104246113	104161189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
ENSMUSG00000021711.18_0	chr13	-	1805	13	FSM	ENSMUSG00000021711.18	ENSMUST00000022224.16	2342	13	6	531	6	106	multi-exon	TRUE	canonical	3	258	junction_6	196.200152905139	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAAAAAGCAGTCAGCGA	NA	False	NA	81	True	NA	NA	NA	104314925	104280355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUSG00000021711.18_1	chr13	-	1687	12	FSM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	52	1799	6	6	multi-exon	FALSE	canonical	3	331	junction_5	157.730704704606	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTCTTTATTTTCTGTA	NA	False	NA	-19	True	AAAACA	-39	NA	104314925	104280455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUSG00000021711.18_3	chr13	-	1679	12	NIC	ENSMUSG00000021711.18	novel	3502	13	NA	NA	6	1	combination_of_known_junctions	FALSE	canonical	3	331	junction_5	173.024051258921	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACATTTCTTTATTTT	NA	False	NA	23	True	AAAACA	-34	NA	104314925	104280460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUSG00000021711.18_5	chr13	-	1695	13	FSM	ENSMUSG00000021711.18	ENSMUST00000141557.8	3502	13	10	1797	-8	1	multi-exon	FALSE	canonical	3	258	junction_6	206.169209766045	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACATTTCTTTATTTT	NA	False	NA	23	True	AAAACA	-34	NA	104314923	104280460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUSG00000021712.16_1	chr13	+	3722	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	44	-350	2	-5	multi-exon	FALSE	canonical	3	141	junction_1	34.1	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTATAAGGAGTTGTTAT	NA	False	NA	-3	True	AATAAA	-7	NA	104315348	104339875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUSG00000021712.16_17	chr13	+	3907	10	NNC	ENSMUSG00000021712.16	novel	3416	11	NA	NA	4474	-5	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	55.184538897533	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTATAAGGAGTTGTTAT	NA	False	NA	-3	True	AATAAA	-7	NA	104320079	104339875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_104320549_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUSG00000021712.16_18	chr13	+	4592	9	ISM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	4780	-355	4479	0	3prime_fragment	FALSE	canonical	3	204	junction_4	17.8308020010318	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGGAGTTGTTATTCTAA	NA	False	NA	2	True	AATAAA	-12	NA	104320084	104339880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUSG00000021712.16_19	chr13	+	3176	10	NNC	ENSMUSG00000021712.16	novel	3416	11	NA	NA	4476	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	72.45228314783	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATCTGACTGTGACGT	NA	False	NA	8	True	AATATA	-22	NA	104320081	104339522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_104320173_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUSG00000021712.16_20	chr13	+	3581	11	NNC	ENSMUSG00000021712.16	novel	3416	11	NA	NA	4477	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	80.9177977950463	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTATAAGGAGTTGTTAT	NA	False	NA	-3	True	AATAAA	-7	NA	104320082	104339875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_104320173_104320495_104320549_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUSG00000021712.16_42	chr13	+	1856	1	ISM	ENSMUSG00000021712.16	ENSMUST00000069187.12	3546	10	22677	1	22418	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAGGAGTTGTTATTCTA	NA	False	NA	1	True	AATAAA	-11	NA	104338023	104339879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_104338000_104339900
ENSMUSG00000021713.10_0	chr13	-	2332	11	FSM	ENSMUSG00000021713.10	ENSMUST00000022226.6	2342	11	10	0	10	0	multi-exon	FALSE	canonical	3	267	junction_6	27.1368752806951	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATACGTGTCAAATGAC	NA	False	NA	-13	True	TATAAA	-11	NA	104365320	104341631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
ENSMUSG00000021714.16_0	chr13	+	986	10	NIC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	3	-7	combination_of_known_junctions	FALSE	canonical	3	409	junction_5	30.3205101100449	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAAGGGCATAGTTTGT	NA	False	NA	3	True	AATAAA	-14	NA	104365465	104386118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ENSMUSG00000021714.16_1	chr13	+	999	10	FSM	ENSMUSG00000021714.16	ENSMUST00000224500.2	1353	10	347	7	3	-7	multi-exon	FALSE	canonical	3	57	junction_4	127.2119840616	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAAGGGCATAGTTTGT	NA	False	NA	3	True	AATAAA	-14	NA	104365465	104386118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370741_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ENSMUSG00000021715.13_0	chr13	-	1850	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	27	194	27	-194	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTTAACCATTTGCAGA	NA	False	NA	-14	True	AATAAA	-20	NA	104953434	104767841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ENSMUSG00000021715.13_8	chr13	-	1855	14	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	31	-194	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_5	188.393143005155	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTTAACCATTTGCAGA	NA	False	NA	-14	True	AATAAA	-20	NA	104953430	104767841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929168_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ENSMUSG00000021716.15_0	chr13	+	1696	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	60	609	-2	-4	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGATTTAAGTGTCTCTG	NA	False	NA	13	True	TATAAA	-23	NA	104953744	104975173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
ENSMUSG00000021716.15_1	chr13	+	1788	1	ISM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	20307	3	3438	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAATAAAAGTCATTT	NA	False	NA	NA	False	AATAAA	-15	NA	104973991	104975779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_104974000_104975800
ENSMUSG00000021720.12_0	chr13	-	2574	7	ISM	ENSMUSG00000021720.12	ENSMUST00000226044.2	3279	8	23361	567	-2	8	3prime_fragment	FALSE	canonical	0	0	junction_3	1.95078331845327	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTTTTTGACTTAATGT	NA	False	NA	NA	False	AATAAA	-20	NA	105407549	105267075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_105268072_105304035_105304162_105317957_105318184_105383170_105383207_105386118_105387076_105388759_105388856_105407412
ENSMUSG00000021720.12_2	chr13	-	2584	8	FSM	ENSMUSG00000021720.12	ENSMUST00000226044.2	3279	8	122	573	122	2	multi-exon	FALSE	canonical	0	0	junction_3	1.8070158058105	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTATTGTTTTTTGACT	NA	False	NA	NA	False	AATAAA	-14	NA	105430788	105267081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_105268072_105304035_105304162_105317957_105318184_105383170_105383207_105386118_105387076_105388759_105388856_105407412_105407548_105430770
ENSMUSG00000021728.9_0	chr13	+	2179	9	FSM	ENSMUSG00000021728.9	ENSMUST00000022242.9	2923	9	424	320	-20	-320	multi-exon	FALSE	canonical	3	356	junction_8	42.5617198900608	407	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAAATGTCCCTTGTGCTG	NA	False	NA	NA	False	AATAAA	-20	NA	117357231	117410631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
ENSMUSG00000021731.11_0	chr13	-	1427	5	FSM	ENSMUSG00000021731.11	ENSMUST00000022245.10	3319	5	1	1891	1	-1891	multi-exon	FALSE	canonical	3	1748	junction_3	110.939172522604	1503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACCAGATTTCTTATGT	NA	False	NA	-15	True	ATTAAA	-15	NA	118523787	118516807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_118517206_118519411_118519589_118521102_118521209_118521769_118521916_118523187
ENSMUSG00000021731.11_6	chr13	-	2699	4	ISM	ENSMUSG00000021731.11	ENSMUST00000022245.10	3319	5	1	1891	1	-1891	intron_retention	FALSE	canonical	3	1748	junction_3	125.151463790436	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACCAGATTTCTTATGT	NA	False	NA	-15	True	ATTAAA	-15	NA	118523787	118516807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_118517206_118519411_118519589_118521102_118521209_118521769
ENSMUSG00000021732.15_0	chr13	+	4107	3	FSM	ENSMUSG00000021732.15	ENSMUST00000022246.9	4114	3	-2	9	-2	-9	multi-exon	FALSE	canonical	3	7	junction_2	4	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAATAAAAGTACTG	NA	False	NA	NA	False	AATAAA	-19	NA	118851232	118928642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_118852248_118918041_118918146_118925654
ENSMUSG00000021732.15_1	chr13	+	2240	1	ISM	ENSMUSG00000021732.15	ENSMUST00000022246.9	4114	3	75168	9	75168	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAATAAAAGTACTG	NA	False	NA	NA	False	AATAAA	-19	NA	118926402	118928642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_118926400_118928600
ENSMUSG00000021733.12_0	chr14	-	7349	25	FSM	ENSMUSG00000021733.12	ENSMUST00000057015.8	8132	25	779	4	-7	-4	multi-exon	FALSE	canonical	3	66	junction_19	12.4782449576141	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCACGGCCTTGGCTGTTGT	NA	False	NA	-9	True	AATAAA	-10	NA	7766705	7669826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_7673687_7675705_7675814_7678598_7678697_7683339_7683472_7687540_7687715_7690868_7690938_7694334_7694587_7694710_7694873_7696412_7696527_7697065_7697228_7698448_7698555_7702777_7703024_7704052_7704187_7707240_7707416_7709421_7709529_7712331_7712479_7719240_7719329_7721139_7721298_7723679_7723796_7729849_7730039_7731418_7731580_7732255_7732395_7735894_7736042_7740479_7740562_7766482
ENSMUSG00000021733.12_2	chr14	-	4567	7	ISM	ENSMUSG00000021733.12	ENSMUST00000224952.3	7297	26	56522	1	-10621	-1	3prime_fragment	FALSE	canonical	3	81	junction_1	12.8927197372091	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCCTTGGCTGTTGTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	7694457	7669823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_7673687_7675705_7675814_7678598_7678697_7683339_7683472_7687540_7687715_7690868_7690938_7694334
ENSMUSG00000021733.12_3	chr14	-	2492	1	ISM	ENSMUSG00000021733.12	ENSMUST00000224952.3	7297	26	78664	1	11521	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCCTTGGCTGTTGTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	7672315	7669823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_7669800_7672300
ENSMUSG00000021733.12_4	chr14	-	7309	25	FSM	ENSMUSG00000021733.12	ENSMUST00000225630.3	3663	25	-20	-3626	-6	-4	multi-exon	TRUE	canonical	0	0	junction_19	22.1114208172057	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCACGGCCTTGGCTGTTGT	NA	False	NA	-9	True	AATAAA	-10	NA	7766704	7669826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_7673687_7675705_7675814_7678598_7678697_7683339_7683472_7687540_7687715_7690868_7690938_7694334_7694587_7694710_7694873_7696412_7696527_7697065_7697228_7698448_7698555_7702777_7703024_7704052_7704187_7707240_7707416_7709421_7709529_7712331_7712479_7719240_7719329_7721139_7721298_7723679_7723796_7729888_7730039_7731418_7731580_7732255_7732395_7735894_7736042_7740479_7740562_7766482
ENSMUSG00000021737.5_0	chr14	+	1325	8	FSM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	51	11	0	-11	multi-exon	FALSE	canonical	3	1151	junction_1	36.7689975886408	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTTAATTTTTTTTC	NA	False	NA	14	True	AATAAA	-16	NA	8348829	8357578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
ENSMUSG00000021737.5_5	chr14	+	1872	7	NIC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	-1	-11	intron_retention	FALSE	canonical	3	1215	junction_2	21.7025344142107	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTTAATTTTTTTTC	NA	False	NA	14	True	AATAAA	-16	NA	8348828	8357578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
ENSMUSG00000021738.6_13	chr14	-	4685	3	ISM	ENSMUSG00000021738.6	ENSMUST00000223714.2	2954	13	105268	-3790	4431	-5	3prime_fragment	TRUE	canonical	1	2	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATACGGCTGGCTGCAT	9423	False	NA	NA	False	AATAAA	-15	NA	8369488	8362465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_8366457_8368094_8368162_8368861
ENSMUSG00000021738.6_15	chr14	-	5067	4	ISM	ENSMUSG00000021738.6	ENSMUST00000022257.4	6853	12	83352	74	-1	-74	3prime_fragment	FALSE	canonical	3	13	junction_1	4.64279609239471	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAAGTTGTGTTTTGCTTT	4991	False	NA	NA	False	AATAAA	-22	NA	8373920	8362534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_8366457_8368861_8369829_8373447_8373570_8373864
ENSMUSG00000021738.6_2	chr14	-	6653	12	FSM	ENSMUSG00000021738.6	ENSMUST00000022257.4	6853	12	193	7	193	-7	multi-exon	FALSE	canonical	3	10	junction_11	5.78399044384977	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAAATACGGCTGGCTGC	NA	False	NA	NA	False	AATAAA	-13	NA	8457079	8362467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_8366457_8368861_8369829_8373447_8373570_8373864_8374064_8374161_8374407_8379653_8379737_8380307_8380568_8382230_8382481_8416739_8416845_8456107_8456177_8456393_8456691_8457012
ENSMUSG00000021738.6_3	chr14	-	4535	2	ISM	ENSMUSG00000021738.6	ENSMUST00000022257.4	6853	12	87866	6	4513	-6	3prime_fragment	FALSE	canonical	3	13	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATACGGCTGGCTGCA	9505	False	NA	NA	False	AATAAA	-14	NA	8369406	8362466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_8366457_8368861
ENSMUSG00000021738.6_4	chr14	-	6609	11	ISM	ENSMUSG00000021738.6	ENSMUST00000022257.4	6853	12	560	6	-93	-6	3prime_fragment	FALSE	canonical	3	12	junction_7	5.07937003968012	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATACGGCTGGCTGCA	NA	False	NA	NA	False	AATAAA	-14	NA	8456712	8362466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_8366457_8368861_8369829_8373447_8373570_8373864_8374064_8374161_8374407_8379653_8379737_8380307_8380568_8382230_8382481_8416739_8416845_8456107_8456177_8456393
ENSMUSG00000021738.6_7	chr14	-	2559	1	ISM	ENSMUSG00000021738.6	ENSMUST00000022257.4	6853	12	92176	77	8823	-77	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAAAGTTGTGTTTTGC	3057	False	NA	NA	False	AATAAA	-19	NA	8365096	8362537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_8362500_8365100
ENSMUSG00000021738.6_8	chr14	-	5917	8	ISM	ENSMUSG00000021738.6	ENSMUST00000022257.4	6853	12	74988	9	10	-9	3prime_fragment	FALSE	canonical	3	12	junction_7	4.80645824036021	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAATAAATACGGCTGGCT	NA	False	NA	NA	False	AATAAA	-11	NA	8382284	8362469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_8366457_8368861_8369829_8373447_8373570_8373864_8374064_8374161_8374407_8379653_8379737_8380307_8380568_8382230
ENSMUSG00000021747.13_0	chr14	+	2685	16	FSM	ENSMUSG00000021747.13	ENSMUST00000102996.4	2681	16	-6	2	-6	-2	multi-exon	FALSE	canonical	3	111	junction_15	21.4813614300605	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGAGTGCTTCCTTTTGT	NA	False	NA	12	True	AATAAA	-12	NA	13803526	14038579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13987152_13987357_13996360_13996423_14026822_14026918_14038054
ENSMUSG00000021747.13_1	chr14	+	2833	14	ISM	ENSMUSG00000021747.13	ENSMUST00000102996.4	2681	16	-13	41398	-13	29831	5prime_fragment	FALSE	canonical	3	123	junction_12	20.0638035531091	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCACTTGTTAACATAATT	NA	False	NA	NA	False	ATTAAA	-18	NA	13803519	13997183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13987152_13987357_13996360
ENSMUSG00000021747.13_6	chr14	+	3538	12	ISM	ENSMUSG00000021747.13	ENSMUST00000225744.2	2390	13	-2	6697	-1	-6697	5prime_fragment	FALSE	canonical	3	126	junction_9	19.2418277168334	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAGTGAAGACTTTCAGC	NA	False	NA	NA	False	AATAAA	-23	NA	13803531	13960655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579
ENSMUSG00000021748.10_1	chr14	+	1431	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	79	3	-9	-3	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	1681	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGAAGTCTTGGAGTACT	NA	False	NA	NA	False	AATAAA	-13	NA	14296826	14303774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
ENSMUSG00000021752.15_0	chr14	-	1633	3	FSM	ENSMUSG00000021752.15	ENSMUST00000022272.14	1650	3	12	5	12	-3	multi-exon	FALSE	canonical	3	225	junction_1	7.5	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATATTAAAGGTTGTAT	NA	False	NA	NA	False	AATAAA	-10	NA	14255621	14246214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_14247587_14249552_14249623_14255430
ENSMUSG00000021752.15_1	chr14	-	3375	3	NNC	ENSMUSG00000021752.15	novel	3052	3	NA	NA	37	-2	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	103.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATATTAAAGGTTGTATT	NA	False	NA	NA	False	AATAAA	-11	NA	14255596	14246213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_14247587_14249552_14249623_14253664
ENSMUSG00000021752.15_5	chr14	-	5883	2	ISM	ENSMUSG00000021752.15	ENSMUST00000022272.14	1650	3	1570	5	1570	-3	3prime_fragment	FALSE	canonical	3	225	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATATTAAAGGTTGTAT	NA	False	NA	NA	False	AATAAA	-10	NA	14254063	14246214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_14247587_14249552
ENSMUSG00000021752.15_6	chr14	-	1057	1	ISM	ENSMUSG00000021752.15	ENSMUST00000022272.14	1650	3	8362	5	8362	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATATTAAAGGTTGTAT	NA	False	NA	NA	False	AATAAA	-10	NA	14247271	14246214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_14246200_14247300
ENSMUSG00000021754.18_0	chr13	-	6958	20	FSM	ENSMUSG00000021754.18	ENSMUST00000109267.9	6978	20	8	12	8	-12	multi-exon	TRUE	canonical	3	32	junction_8	9.29659038560826	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGTTAACTGGTATT	NA	False	NA	NA	False	AATAAA	-9	NA	111945519	111882973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_111885584_111886976_111887109_111887752_111887896_111888898_111889031_111890272_111890436_111891176_111891330_111891644_111892897_111893146_111893337_111893627_111893720_111894599_111894722_111896485_111896765_111899587_111899772_111900032_111900115_111900615_111900738_111904496_111904646_111905010_111905128_111905820_111906022_111909129_111909331_111912401_111912553_111945036
ENSMUSG00000021754.18_1	chr13	-	1837	1	ISM	ENSMUSG00000021754.18	ENSMUST00000109267.9	6978	20	60717	12	3097	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGTTAACTGGTATT	NA	False	NA	NA	False	AATAAA	-9	NA	111884810	111882973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_111883000_111884800
ENSMUSG00000021754.18_2	chr13	-	3129	5	ISM	ENSMUSG00000021754.18	ENSMUST00000109267.9	6978	20	55143	12	854	-12	3prime_fragment	FALSE	canonical	3	56	junction_1	4.55521678957215	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGTTAACTGGTATT	NA	False	NA	NA	False	AATAAA	-9	NA	111890384	111882973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_111885584_111886976_111887109_111887752_111887896_111888898_111889031_111890272
ENSMUSG00000021754.18_22	chr13	-	1615	3	ISM	ENSMUSG00000021754.18	ENSMUST00000109267.9	6978	20	15	25381	15	-3825	5prime_fragment	FALSE	canonical	3	52	junction_2	6.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGATTTGAGGTTCCTAA	NA	False	NA	NA	False	NA	NA	NA	111945512	111908342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_111909331_111912401_111912553_111945036
ENSMUSG00000021754.18_3	chr13	-	4001	7	ISM	ENSMUSG00000021754.18	ENSMUST00000109267.9	6978	20	53215	12	-1074	-12	3prime_fragment	TRUE	canonical	3	53	junction_6	6.04611904907235	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGTTAACTGGTATT	NA	False	NA	NA	False	AATAAA	-9	NA	111892312	111882973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_111885584_111886976_111887109_111887752_111887896_111888898_111889031_111890272_111890436_111891176_111891330_111891644
ENSMUSG00000021754.18_4	chr13	-	5154	11	ISM	ENSMUSG00000021754.18	ENSMUST00000109267.9	6978	20	48877	12	-5412	-12	3prime_fragment	FALSE	canonical	3	32	junction_8	10.463746938836	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGTTAACTGGTATT	NA	False	NA	NA	False	AATAAA	-9	NA	111896650	111882973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_111885584_111886976_111887109_111887752_111887896_111888898_111889031_111890272_111890436_111891176_111891330_111891644_111892897_111893146_111893337_111893627_111893720_111894599_111894722_111896485
ENSMUSG00000021754.18_7	chr13	-	2693	2	ISM	ENSMUSG00000021754.18	ENSMUST00000175936.2	544	3	848	-2353	848	-12	3prime_fragment	FALSE	canonical	3	56	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGTTAACTGGTATT	NA	False	NA	NA	False	AATAAA	-9	NA	111887059	111882973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_111885584_111886976
ENSMUSG00000021756.13_0	chr13	+	5386	17	FSM	ENSMUSG00000021756.13	ENSMUST00000183663.8	8678	17	47	3245	5	-19	multi-exon	FALSE	canonical	3	291	junction_16	42.4389267065038	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCGTATTCTTTCGTGTG	NA	False	NA	16	True	AATAAA	-17	NA	112600650	112643375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112624242_112624404_112625037_112625193_112627016_112627177_112630122_112630206_112631112_112631324_112631723_112631907_112633818_112633921_112634255_112634403_112635282_112635424_112637646_112637744_112639324_112639407_112640238
ENSMUSG00000021756.13_59	chr13	+	2114	1	ISM	ENSMUSG00000021756.13	ENSMUST00000183663.8	8678	17	40665	3238	29689	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTTTCGTGTGTAAAAAT	1797	False	NA	23	True	AATAAA	-24	NA	112641268	112643382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_112641300_112643400
ENSMUSG00000021758.15_0	chr13	-	2891	22	NNC	ENSMUSG00000021758.15	novel	3012	22	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	13.8457652522171	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCCAACAGCATTTT	NA	False	NA	-1	True	AATAAA	-22	NA	112788873	112734868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761372_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112777683_112777762_112781042_112781101_112787865_112787953_112788809
ENSMUSG00000021758.15_16	chr13	-	2813	21	ISM	ENSMUSG00000021758.15	ENSMUST00000099166.10	3012	22	1055	1	881	-1	3prime_fragment	FALSE	canonical	3	36	junction_3	9.28372231381357	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTTTCCAACAGCATTT	NA	False	NA	-2	True	AATAAA	-21	NA	112787954	112734869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761357_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112777683_112777762_112781042_112781101_112787865
ENSMUSG00000021758.15_3	chr13	-	2876	22	FSM	ENSMUSG00000021758.15	ENSMUST00000099166.10	3012	22	135	1	-39	-1	multi-exon	FALSE	canonical	3	36	junction_3	9.06389513461723	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTTTCCAACAGCATTT	NA	False	NA	-2	True	AATAAA	-21	NA	112788874	112734869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761357_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112777683_112777762_112781042_112781101_112787865_112787953_112788809
ENSMUSG00000021758.15_4	chr13	-	2904	22	NNC	ENSMUSG00000021758.15	novel	3012	22	NA	NA	-52	-1	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_19	12.5835079052629	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTTTCCAACAGCATTT	NA	False	NA	-2	True	AATAAA	-21	NA	112788887	112734869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761357_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112777683_112777777_112781042_112781101_112787865_112787953_112788809
ENSMUSG00000021759.15_2	chr13	+	1556	6	FSM	ENSMUSG00000021759.15	ENSMUST00000016144.12	1598	6	27	15	27	-15	multi-exon	FALSE	canonical	3	199	junction_2	66.7730484551964	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAACACTGGGAAGCGTT	9664	False	NA	-1	True	AATAAA	-14	NA	112937352	113004413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_112937801_112971392_112971548_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000021759.15_5	chr13	+	1407	5	NIC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	23	-13	combination_of_known_splicesites	FALSE	canonical	3	68	junction_1	115.720298565118	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACACTGGGAAGCGTTTG	9660	False	NA	1	True	AATAAA	-16	NA	112937348	113004415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_112937801_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000021759.15_6	chr13	+	1562	6	FSM	ENSMUSG00000021759.15	ENSMUST00000070951.8	1272	6	-53	-237	18	-15	multi-exon	FALSE	canonical	3	38	junction_1	139.137342219837	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAACACTGGGAAGCGTT	9655	False	NA	-1	True	AATAAA	-14	NA	112937343	113004413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_112937801_112987936_112988089_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000021760.6_0	chr13	-	1014	3	FSM	ENSMUSG00000021760.6	ENSMUST00000022282.6	1042	3	24	4	7	-4	multi-exon	FALSE	canonical	3	23	junction_2	4	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATAAAGTGCATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	113182920	113179296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_113179834_113181965_113182228_113182705
ENSMUSG00000021760.6_1	chr13	-	752	2	FSM	ENSMUSG00000021760.6	ENSMUST00000231962.2	769	2	7	10	7	-4	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATAAAGTGCATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	113182920	113179296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_113179834_113182705
ENSMUSG00000021763.18_15	chr13	+	5257	8	ISM	ENSMUSG00000021763.18	ENSMUST00000136755.10	8274	10	26979	204	-22410	-201	3prime_fragment	FALSE	canonical	3	29	junction_7	5.89015089373951	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGTATTTGAATTGTC	NA	False	NA	6	True	AATAAA	-14	NA	113456671	113506845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_113457754_113459268_113459740_113464108_113464286_113478903_113479103_113483044_113483177_113488130_113488301_113502617_113502802_113504003
ENSMUSG00000021763.18_17	chr13	+	3874	7	ISM	ENSMUSG00000021763.18	ENSMUST00000136755.10	8274	10	29877	204	-19512	-201	3prime_fragment	FALSE	canonical	3	29	junction_6	5.33593686452737	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGTATTTGAATTGTC	NA	False	NA	6	True	AATAAA	-14	NA	113459569	113506845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_113459740_113464108_113464286_113478903_113479103_113483044_113483177_113488130_113488301_113502617_113502802_113504003
ENSMUSG00000021763.18_19	chr13	+	3002	2	ISM	ENSMUSG00000021763.18	ENSMUST00000078163.14	3546	6	23560	201	14505	-201	intron_retention	FALSE	canonical	3	29	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGTATTTGAATTGTC	NA	False	NA	6	True	AATAAA	-14	NA	113502641	113506845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_113502802_113504003
ENSMUSG00000021763.18_20	chr13	+	2166	1	ISM	ENSMUSG00000021763.18	ENSMUST00000136755.10	8274	10	75188	3	16744	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGGTCTCTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	113504880	113507046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_113504900_113507000
ENSMUSG00000021763.18_4	chr13	+	8016	10	FSM	ENSMUSG00000021763.18	ENSMUST00000136755.10	8274	10	54	204	54	-201	multi-exon	FALSE	canonical	3	29	junction_9	5.32870169256969	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGTATTTGAATTGTC	NA	False	NA	6	True	AATAAA	-14	NA	113429746	113506845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_113429869_113453617_113453782_113454198_113457754_113459268_113459740_113464108_113464286_113478903_113479103_113483044_113483177_113488130_113488301_113502617_113502802_113504003
ENSMUSG00000021763.18_6	chr13	+	5150	4	ISM	ENSMUSG00000021763.18	ENSMUST00000136755.10	8274	10	15	46511	15	-46508	5prime_fragment	FALSE	canonical	3	41	junction_1	2.35702260395516	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATAGACTCTCTGGGTTG	NA	False	NA	NA	False	NA	NA	NA	113429707	113460538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_113429869_113453617_113453782_113454198_113457754_113459268
ENSMUSG00000021764.9_0	chr13	-	581	4	FSM	ENSMUSG00000021764.9	ENSMUST00000232101.2	716	4	-21	156	-8	-3	multi-exon	FALSE	canonical	3	49	junction_1	693.907454604399	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGTACACTTGGCAGTTT	NA	False	NA	-21	True	AATAAA	-16	NA	114524607	114425186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_114425403_114453392_114453566_114487983_114488063_114524494
ENSMUSG00000021764.9_1	chr13	-	657	5	FSM	ENSMUSG00000021764.9	ENSMUST00000022286.8	1698	5	185	856	7	-3	multi-exon	FALSE	canonical	3	1521	junction_3	83.4187478927849	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGTACACTTGGCAGTTT	NA	False	NA	-21	True	AATAAA	-16	NA	114524609	114425186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983_114488063_114524494
ENSMUSG00000021764.9_3	chr13	-	576	4	FSM	ENSMUSG00000021764.9	ENSMUST00000225035.2	571	4	-8	3	-8	-3	multi-exon	FALSE	canonical	3	165	junction_3	707.770364517256	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGTACACTTGGCAGTTT	NA	False	NA	-21	True	AATAAA	-16	NA	114524607	114425186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114524494
ENSMUSG00000021764.9_4	chr13	-	217	1	NIC	ENSMUSG00000021764.9	novel	1698	5	NA	NA	99182	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGTACACTTGGCAGTTT	NA	False	NA	-21	True	AATAAA	-16	NA	114425403	114425186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_114425200_114425400
ENSMUSG00000021765.10_0	chr13	-	2324	6	FSM	ENSMUSG00000021765.10	ENSMUST00000022287.8	1851	6	207	-680	-156	0	multi-exon	FALSE	canonical	3	13	junction_1	3.32264954516723	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAAAAAAATGT	NA	False	NA	NA	False	TATAAA	-36	NA	114595278	114588825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_114590042_114590815_114591047_114591656_114591882_114592219_114592439_114592898_114593091_114595037
ENSMUSG00000021765.10_1	chr13	-	2326	6	FSM	ENSMUSG00000021765.10	ENSMUST00000231252.2	1113	6	-144	-1069	-144	17	multi-exon	FALSE	canonical	2	2	junction_2	7.29383301152419	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAAAGCCAGCGGTCTCA	NA	False	NA	NA	False	AATAAA	-8	NA	114595266	114588808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_114590042_114590815_114591044_114591656_114591882_114592219_114592439_114592898_114593091_114595037
ENSMUSG00000021765.10_3	chr13	-	988	1	Genic_Genomic	ENSMUSG00000021765.10	novel	NA	NA	NA	NA	1294	20	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCCAGCGGTCTCAGTT	NA	False	NA	NA	False	AATAAA	-11	NA	114589793	114588805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_114588800_114589800
ENSMUSG00000021765.10_6	chr13	-	2582	6	FSM	ENSMUSG00000021765.10	ENSMUST00000223640.3	2833	6	251	0	-114	0	multi-exon	FALSE	canonical	1	3	junction_1	6.97423830966508	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAAAAAAATGT	NA	False	NA	NA	False	TATAAA	-36	NA	114595236	114588825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_114590342_114590815_114591047_114591656_114591882_114592219_114592439_114592898_114593091_114595037
ENSMUSG00000021767.20_0	chr14	+	6916	17	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	97	junction_7	37.2808177887771	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGCCTCTCGTGTCCTGTC	NA	False	NA	7	True	AATAAA	-17	NA	21531503	21722198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ENSMUSG00000021767.20_3	chr14	+	7245	17	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	25	junction_7	47.1299732123836	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCTCGTGTCCTGTCAT	NA	False	NA	9	True	AATAAA	-19	NA	21531503	21722200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21675284_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ENSMUSG00000021767.20_37	chr14	+	6255	16	ISM	ENSMUSG00000021767.20	ENSMUST00000182405.9	6977	17	17380	7	290	-7	3prime_fragment	FALSE	canonical	3	97	junction_6	36.2544096934735	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTAGCCTCTCGTGTCC	6275	False	NA	3	True	AATAAA	-13	NA	21567232	21722194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ENSMUSG00000021767.20_51	chr14	+	5434	10	ISM	ENSMUSG00000021767.20	ENSMUST00000238837.2	6165	16	109841	-1259	964	-1	3prime_fragment	FALSE	canonical	3	166	junction_5	13.1412083928645	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCTCGTGTCCTGTCAT	NA	False	NA	9	True	AATAAA	-19	NA	21676783	21722200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ENSMUSG00000021767.20_65	chr14	+	4711	5	ISM	ENSMUSG00000021767.20	ENSMUST00000238837.2	6165	16	143948	-1255	35071	-5	3prime_fragment	FALSE	canonical	3	181	junction_1	9.8836987003854	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTAGCCTCTCGTGTCCTG	NA	False	NA	5	True	AATAAA	-15	NA	21710890	21722196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
ENSMUSG00000021767.20_66	chr14	+	4547	4	ISM	ENSMUSG00000021767.20	ENSMUST00000238837.2	6165	16	144568	-1258	35691	-2	3prime_fragment	FALSE	canonical	3	185	junction_3	8.60232526704263	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTCTCGTGTCCTGTCA	NA	False	NA	8	True	AATAAA	-18	NA	21711510	21722199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_21711656_21712225_21712535_21714524_21714817_21718398
ENSMUSG00000021767.20_70	chr14	+	4194	3	ISM	ENSMUSG00000021767.20	ENSMUST00000238837.2	6165	16	145490	-1257	36613	-3	3prime_fragment	FALSE	canonical	3	185	junction_2	10.5	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGCCTCTCGTGTCCTGTC	NA	False	NA	7	True	AATAAA	-17	NA	21712432	21722198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_21712535_21714524_21714817_21718398
ENSMUSG00000021767.20_71	chr14	+	3921	2	ISM	ENSMUSG00000021767.20	ENSMUST00000238837.2	6165	16	147751	-1255	38874	-5	3prime_fragment	FALSE	canonical	3	185	junction_1	0	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTAGCCTCTCGTGTCCTG	NA	False	NA	5	True	AATAAA	-15	NA	21714693	21722196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_21714817_21718398
ENSMUSG00000021767.20_72	chr14	+	3343	1	ISM	ENSMUSG00000021767.20	ENSMUST00000182405.9	6977	17	169005	1	43038	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	300	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCTCGTGTCCTGTCAT	NA	False	NA	9	True	AATAAA	-19	NA	21718857	21722200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_21718900_21722200
ENSMUSG00000021770.12_0	chr14	+	5173	6	FSM	ENSMUSG00000021770.12	ENSMUST00000144061.2	1613	6	10	-3570	10	-1854	multi-exon	FALSE	canonical	3	25	junction_2	6.01331855134916	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	2641	False	NA	NA	False	NA	NA	NA	21800625	21846940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_21800905_21825030_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004
ENSMUSG00000021770.12_1	chr14	+	5117	6	FSM	ENSMUSG00000021770.12	ENSMUST00000022292.10	1574	6	27	-3570	10	-1854	multi-exon	FALSE	canonical	3	20	junction_1	7.55248303539968	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	2641	False	NA	NA	False	NA	NA	NA	21800625	21846940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_21800849_21825030_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004
ENSMUSG00000021770.12_4	chr14	+	4797	5	ISM	ENSMUSG00000021770.12	ENSMUST00000119430.3	6801	6	23508	1854	-16812	-1854	3prime_fragment	FALSE	canonical	3	25	junction_1	6.60965203320114	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21825127	21846940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004
ENSMUSG00000021770.12_5	chr14	+	3475	1	ISM	ENSMUSG00000021770.12	ENSMUST00000119430.3	6801	6	43695	5	3375	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATGTGGCTTGTTATAA	6883	False	NA	9	True	AATAAA	-13	NA	21845314	21848789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_21845300_21848800
ENSMUSG00000021771.15_1	chr14	+	1325	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	269	360	-28	0	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	1682	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTGTGCATGTTTGTT	NA	False	NA	22	True	AATAGA	-18	NA	21881605	21895587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
ENSMUSG00000021772.16_0	chr14	-	973	4	FSM	ENSMUSG00000021772.16	ENSMUST00000133460.2	619	4	60	-414	8	19	multi-exon	FALSE	canonical	2	6	junction_3	47.8493004709113	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGCTTGTCAGGACTCTC	NA	False	NA	-20	True	AATAAA	-33	NA	4198450	4189239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_4189750_4191150_4191393_4192727_4192871_4198372
ENSMUSG00000021772.16_4	chr14	-	934	4	FSM	ENSMUSG00000021772.16	ENSMUST00000132374.9	4598	4	99	3565	-3	1	multi-exon	FALSE	canonical	3	85	junction_3	10.6144555520604	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACCATGGGAACTCTTC	NA	False	NA	-38	True	AATAAA	-15	NA	4198461	4189257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_4189750_4191150_4191393_4192889_4193001_4198372
ENSMUSG00000021772.16_8	chr14	-	3179	1	ISM	ENSMUSG00000021772.16	ENSMUST00000132374.9	4598	4	9621	68	9493	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGAATGCCTAGTTAA	NA	False	NA	NA	False	AATAAA	-13	NA	4188939	4185760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_4185800_4188900
ENSMUSG00000021773.12_2	chr14	-	919	7	FSM	ENSMUSG00000021773.12	ENSMUST00000124549.9	2314	7	69	1326	-14	-2	multi-exon	FALSE	canonical	3	244	junction_3	15.9661099415815	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTTCTGAGCATCCTCTT	NA	False	NA	-12	True	AATAAA	-15	NA	21898976	21897248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_21897496_21897681_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUSG00000021773.12_3	chr14	-	475	3	ISM	ENSMUSG00000021773.12	ENSMUST00000177527.2	714	6	715	-88	-162	-2	3prime_fragment	FALSE	canonical	3	266	junction_1	8.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGCGACCTTCTGAGCAT	NA	False	NA	-18	True	AATAAA	-9	NA	21898040	21897254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_21897496_21897681_21897816_21897940
ENSMUSG00000021773.12_5	chr14	-	971	6	FSM	ENSMUSG00000021773.12	ENSMUST00000022295.4	981	6	9	1	9	-1	multi-exon	FALSE	canonical	3	266	junction_1	9.09065454189081	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTCTGAGCATCCTCTTC	NA	False	NA	-11	True	AATAAA	-16	NA	21898953	21897247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_21897496_21897681_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUSG00000021773.12_6	chr14	-	1179	5	NIC	ENSMUSG00000021773.12	novel	981	6	NA	NA	-13	-1	intron_retention	FALSE	canonical	3	276	junction_4	6.05702071979286	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTCTGAGCATCCTCTTC	NA	False	NA	-11	True	AATAAA	-16	NA	21898975	21897247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUSG00000021773.12_7	chr14	-	773	4	ISM	ENSMUSG00000021773.12	ENSMUST00000022295.4	981	6	542	1	335	-1	3prime_fragment	FALSE	canonical	3	266	junction_1	11.1455023315337	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTCTGAGCATCCTCTTC	NA	False	NA	-11	True	AATAAA	-16	NA	21898420	21897247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_21897496_21897681_21897816_21897940_21898189_21898277
ENSMUSG00000021773.12_9	chr14	-	1298	4	NIC	ENSMUSG00000021773.12	novel	981	6	NA	NA	4	10	intron_retention	FALSE	canonical	3	276	junction_3	6.94422221866655	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTCTTCCAGCGTTCACT	NA	False	NA	0	True	AATAAA	-27	NA	21898958	21897236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUSG00000021774.14_0	chr14	+	1361	6	FSM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	34	13	34	-13	multi-exon	FALSE	canonical	3	247	junction_1	27.2073519475895	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACAACTACTGACCCTG	NA	False	NA	11	True	AATAAA	-8	NA	4137870	4186961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_4138010_4138561_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
ENSMUSG00000021774.14_9	chr14	+	430	1	ISM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	48701	7	44133	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTACTGACCCTGCTGTGT	NA	False	NA	17	True	AATAAA	-14	NA	4186537	4186967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_4186500_4187000
ENSMUSG00000021775.12_0	chr14	+	4634	8	FSM	ENSMUSG00000021775.12	ENSMUST00000090543.6	4663	8	23	6	23	-6	multi-exon	FALSE	canonical	3	94	junction_5	14.9229312653721	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGAGTTTATTGTTTTGT	NA	False	NA	22	True	TATAAA	-12	NA	4230591	4265636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_4230886_4247442_4247710_4249639_4249729_4252901_4253047_4254202_4254823_4257731_4257918_4261566_4261778_4262814
ENSMUSG00000021775.12_1	chr14	+	7543	7	NIC	ENSMUSG00000021775.12	novel	4663	8	NA	NA	20	-9	intron_retention	FALSE	canonical	3	101	junction_6	13.5328817658653	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATGAGTTTATTGTTT	NA	False	NA	19	True	TATAAA	-9	NA	4230588	4265633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_4230886_4247442_4247710_4249639_4249729_4252901_4253047_4254202_4257918_4261566_4261778_4262814
ENSMUSG00000021775.12_19	chr14	+	3518	4	ISM	ENSMUSG00000021775.12	ENSMUST00000090543.6	4663	8	23957	4	-2798	-4	3prime_fragment	FALSE	canonical	3	94	junction_1	8.28653526310404	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTTTATTGTTTTGTTC	NA	False	NA	24	True	TATAAA	-14	NA	4254525	4265638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_4254823_4257731_4257918_4261566_4261778_4262814
ENSMUSG00000021775.12_23	chr14	+	2234	1	ISM	ENSMUSG00000021775.12	ENSMUST00000090543.6	4663	8	32835	5	6080	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGTTTATTGTTTTGTT	NA	False	NA	23	True	TATAAA	-13	NA	4263403	4265637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_4263400_4265600
ENSMUSG00000021782.15_1	chr14	-	2625	8	ISM	ENSMUSG00000021782.15	ENSMUST00000042009.13	6336	27	30668	2	-933	0	3prime_fragment	FALSE	canonical	3	95	junction_6	24.3125901708626	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCTGTGTGTAGACCCT	NA	False	NA	-6	True	AATAAA	-14	NA	24197189	24184022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369_24194564_24196219_24196391_24197140
ENSMUSG00000021782.15_12	chr14	-	3281	12	ISM	ENSMUSG00000021782.15	ENSMUST00000042009.13	6336	27	27189	3	-54	-1	3prime_fragment	FALSE	canonical	3	90	junction_11	27.0936545283666	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCCCTGTGTGTAGACCC	NA	False	NA	-7	True	AATAAA	-13	NA	24200668	24184023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369_24194564_24196219_24196391_24197140_24197290_24198275_24198460_24199430_24199581_24200206_24200341_24200579
ENSMUSG00000021782.15_14	chr14	-	4499	18	ISM	ENSMUSG00000021782.15	ENSMUST00000042009.13	6336	27	19535	2	-989	0	3prime_fragment	FALSE	canonical	3	79	junction_16	26.924474658573	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCTGTGTGTAGACCCT	NA	False	NA	-6	True	AATAAA	-14	NA	24208322	24184022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369_24194564_24196219_24196391_24197140_24197290_24198275_24198460_24199430_24199581_24200206_24200341_24200579_24200743_24204298_24204450_24204667_24204758_24205208_24205322_24206539_24206685_24207013_24207138_24207802
ENSMUSG00000021782.15_15	chr14	-	2473	6	ISM	ENSMUSG00000021782.15	ENSMUST00000042009.13	6336	27	33226	2	1625	0	3prime_fragment	TRUE	canonical	3	145	junction_4	6.05309838016862	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCTGTGTGTAGACCCT	NA	False	NA	-6	True	AATAAA	-14	NA	24194631	24184022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369
ENSMUSG00000021782.15_16	chr14	-	1200	1	ISM	ENSMUSG00000021782.15	ENSMUST00000166007.8	2334	6	11034	2	11034	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCTGTGTGTAGACCCT	NA	False	NA	-6	True	AATAAA	-14	NA	24185222	24184022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_24184000_24185200
ENSMUSG00000021782.15_26	chr14	-	2185	5	ISM	ENSMUSG00000021782.15	ENSMUST00000042009.13	6336	27	39064	2	7463	0	3prime_fragment	FALSE	canonical	3	145	junction_4	6.49519052838329	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCTGTGTGTAGACCCT	NA	False	NA	-6	True	AATAAA	-14	NA	24188793	24184022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675
ENSMUSG00000021782.15_3	chr14	-	2814	9	ISM	ENSMUSG00000021782.15	ENSMUST00000042009.13	6336	27	29492	3	467	-1	3prime_fragment	FALSE	canonical	3	95	junction_6	25.2871014550897	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCCCTGTGTGTAGACCC	NA	False	NA	-7	True	AATAAA	-13	NA	24198365	24184023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369_24194564_24196219_24196391_24197140_24197290_24198275
ENSMUSG00000021782.15_4	chr14	-	7610	32	FSM	ENSMUSG00000021782.15	ENSMUST00000090398.11	7851	32	241	0	241	0	multi-exon	FALSE	canonical	3	63	junction_27	24.1232527147577	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCTGTGTGTAGACCCT	NA	False	NA	-6	True	AATAAA	-14	NA	24295747	24184022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369_24194564_24196219_24196391_24197140_24197290_24198275_24198460_24199430_24199581_24200206_24200341_24200579_24200743_24204298_24204450_24204667_24204758_24205208_24205322_24206539_24206685_24207013_24207138_24207802_24208823_24210312_24210406_24214098_24214203_24214465_24214642_24215312_24215441_24216228_24216362_24220497_24220624_24222087_24222273_24226463_24226777_24227795_24228056_24240385_24240570_24241215_24241360_24242859_24243023_24252365_24252435_24295214
ENSMUSG00000021782.15_51	chr14	-	5807	25	ISM	ENSMUSG00000021782.15	ENSMUST00000090398.11	7851	32	73853	0	5722	0	3prime_fragment	FALSE	canonical	3	74	junction_24	24.3154900332187	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCTGTGTGTAGACCCT	NA	False	NA	-6	True	AATAAA	-14	NA	24222135	24184022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369_24194564_24196219_24196391_24197140_24197290_24198275_24198460_24199430_24199581_24200206_24200341_24200579_24200743_24204298_24204450_24204667_24204758_24205208_24205322_24206539_24206685_24207013_24207138_24207802_24208823_24210312_24210406_24214098_24214203_24214465_24214642_24215312_24215441_24216228_24216362_24220497_24220624_24222087
ENSMUSG00000021782.15_8	chr14	-	7469	31	NIC	ENSMUSG00000021782.15	novel	7851	32	NA	NA	238	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_28	29.5535107897522	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCTGTGTGTAGACCCT	NA	False	NA	-6	True	AATAAA	-14	NA	24295750	24184022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369_24194564_24196219_24196391_24197140_24197290_24198275_24198460_24199430_24199581_24200206_24200341_24200579_24200743_24204298_24204450_24204667_24204758_24205208_24205322_24206539_24206685_24207013_24207138_24207802_24208823_24210312_24210406_24214098_24214203_24214465_24214642_24215312_24215441_24216228_24216362_24220497_24220624_24222087_24222273_24226463_24226777_24227795_24228056_24240385_24240570_24242859_24243023_24252365_24252435_24295214
ENSMUSG00000021785.9_0	chr14	-	2500	12	FSM	ENSMUSG00000021785.9	ENSMUST00000022310.7	2935	12	45	390	-2	4	multi-exon	FALSE	canonical	3	40	junction_2	12.9506373690434	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCAGTGCTTACC	NA	False	NA	-2	True	AATAAA	-19	NA	6220438	6158226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_6158905_6159271_6159450_6175089_6175276_6178827_6178993_6186289_6186401_6187877_6188024_6188948_6189071_6191741_6191965_6199122_6199289_6208962_6209200_6215006_6215122_6220265
ENSMUSG00000021785.9_6	chr14	-	3020	4	ISM	ENSMUSG00000021785.9	ENSMUST00000153109.2	3296	5	0	10328	0	1986	5prime_fragment	FALSE	canonical	3	70	junction_2	8.52447456836295	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTCTCACAGTCAATCAA	NA	False	NA	NA	False	ATTAAA	-12	NA	6220436	6196791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_6199289_6208962_6209200_6215006_6215122_6220265
ENSMUSG00000021786.14_0	chr14	+	3488	3	FSM	ENSMUSG00000021786.14	ENSMUST00000112624.3	1586	3	-27	-1875	-27	16	multi-exon	FALSE	canonical	1	1	junction_1	10	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGATAAACAACAAAAAAAG	NA	False	NA	NA	False	AATAAA	-9	NA	6220561	6231092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_6220642_6226964_6227973_6228692
ENSMUSG00000021786.14_1	chr14	+	3436	3	FSM	ENSMUSG00000021786.14	ENSMUST00000112625.9	3434	3	8	-10	8	10	multi-exon	FALSE	canonical	3	8	junction_1	6.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTTGTAAGATAAACAACAA	NA	False	NA	NA	False	AATAAA	-3	NA	6226439	6231086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_6226474_6226964_6227973_6228692
ENSMUSG00000021786.14_2	chr14	+	1074	2	ISM	ENSMUSG00000021786.14	ENSMUST00000112625.9	3434	3	949	1902	905	-43	3prime_fragment	FALSE	canonical	3	21	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTGGTATTTGTATAGT	NA	False	NA	NA	False	NA	NA	NA	6227380	6229174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_6227973_6228692
ENSMUSG00000021786.14_3	chr14	+	1540	1	ISM	ENSMUSG00000021786.14	ENSMUST00000022311.12	3759	3	9603	14	3082	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAACAAAAAAAGTCTTC	NA	False	NA	NA	False	AATAAA	-14	NA	6229557	6231097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_6229600_6231100
ENSMUSG00000021792.16_1	chr14	-	1573	6	FSM	ENSMUSG00000021792.16	ENSMUST00000118466.8	1567	6	-4	-2	-4	2	multi-exon	FALSE	canonical	3	166	junction_5	66.6111101844129	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCACCTCTGTGCACAAG	NA	False	NA	-20	True	AATAAA	-13	NA	40735749	40715694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726178_40735654
ENSMUSG00000021792.16_11	chr14	-	1644	6	NIC	ENSMUSG00000021792.16	novel	1567	6	NA	NA	-5	0	combination_of_known_junctions	TRUE	canonical	3	17	junction_5	123.38816799029	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735750	40715696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726178_40735582
ENSMUSG00000021792.16_2	chr14	-	1557	6	FSM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	-18	-2	-5	2	multi-exon	FALSE	canonical	3	150	junction_5	72.4911029023562	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCACCTCTGTGCACAAG	NA	False	NA	-20	True	AATAAA	-13	NA	40735750	40715694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735654
ENSMUSG00000021792.16_3	chr14	-	1617	6	NIC	ENSMUSG00000021792.16	novel	1537	6	NA	NA	-6	2	combination_of_known_junctions	TRUE	canonical	3	24	junction_5	120.659852477947	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCACCTCTGTGCACAAG	NA	False	NA	-20	True	AATAAA	-13	NA	40735738	40715694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735582
ENSMUSG00000021794.17_0	chr14	+	2980	13	FSM	ENSMUSG00000021794.17	ENSMUST00000022322.17	3390	13	48	362	48	-362	multi-exon	FALSE	canonical	3	1379	junction_7	93.7817723938577	3128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGTATGTTTCTTTTCT	NA	False	NA	12	True	ATTAAA	-15	NA	34032731	34066860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_34033300_34041838_34041920_34043724_34043781_34047469_34047534_34051245_34051341_34056068_34056249_34057258_34057397_34058049_34058188_34058452_34058534_34060716_34060841_34061883_34061976_34064075_34064139_34065560
ENSMUSG00000021796.16_0	chr14	-	1985	1	ISM	ENSMUSG00000021796.16	ENSMUST00000049005.15	5956	13	89636	333	47505	-333	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCAGTGATGTGTTTTGT	NA	False	NA	-6	True	AGTAAA	-18	NA	34135008	34133023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_34133000_34135000
ENSMUSG00000021796.16_1	chr14	-	5503	13	FSM	ENSMUSG00000021796.16	ENSMUST00000049005.15	5956	13	115	338	-44	-338	multi-exon	FALSE	canonical	3	65	junction_12	20.5622361516338	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATACTTCAGTGATGTGT	NA	False	NA	-11	True	AGTAAA	-13	NA	34224529	34133028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_34136627_34136716_34136848_34137663_34137840_34144516_34144815_34146902_34147096_34151612_34151758_34156335_34156436_34156594_34156692_34163055_34163159_34165775_34165939_34169728_34169936_34182455_34182570_34224351
ENSMUSG00000021796.16_12	chr14	-	2252	5	ISM	ENSMUSG00000021796.16	ENSMUST00000049005.15	5956	13	77595	2436	35464	1316	3prime_fragment	FALSE	canonical	3	104	junction_4	13.6633634219397	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACAGATCTGGTTCAA	5430	False	NA	NA	False	AATAAA	-19	NA	34147049	34135126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_34136627_34136716_34136848_34137663_34137840_34144516_34144815_34146902
ENSMUSG00000021796.16_2	chr14	-	5499	13	NNC	ENSMUSG00000021796.16	novel	5956	13	NA	NA	-37	-338	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_12	27.8581476212775	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATACTTCAGTGATGTGT	NA	False	NA	-11	True	AGTAAA	-13	NA	34224522	34133028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_34136627_34136716_34136848_34137663_34137840_34144516_34144815_34146902_34147096_34151612_34151758_34156335_34156436_34156594_34156692_34163055_34163159_34165775_34165939_34169728_34169936_34182455_34182573_34224351
ENSMUSG00000021796.16_7	chr14	-	5698	14	NNC	ENSMUSG00000021796.16	novel	5956	13	NA	NA	-11	-330	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_13	41.8421943828145	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGATGTGTTTTGTGAT	NA	False	NA	-3	True	AGTAAA	-21	NA	34224496	34133020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_34136627_34136716_34136848_34137663_34137840_34144516_34144815_34146902_34147096_34151612_34151758_34156335_34156436_34156594_34156692_34163055_34163159_34165775_34165939_34169728_34169936_34182455_34182570_34223318_34223539_34224351
ENSMUSG00000021798.15_0	chr14	-	3074	3	ISM	ENSMUSG00000021798.15	ENSMUST00000090040.12	4981	15	46671	-11	35005	11	3prime_fragment	FALSE	canonical	2	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATATACAAATGGCGATGT	NA	False	NA	NA	False	AATAAA	-16	NA	34263946	34248670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_34251507_34258521_34258638_34263824
ENSMUSG00000021798.15_2	chr14	-	2055	1	ISM	ENSMUSG00000021798.15	ENSMUST00000022327.13	5119	14	59887	120	48217	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGATATACAAA	1843	False	NA	NA	False	AATAAA	-7	NA	34250734	34248679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_34248700_34250700
ENSMUSG00000021798.15_3	chr14	-	3968	7	ISM	ENSMUSG00000021798.15	ENSMUST00000090040.12	4981	15	33172	12	21506	-12	3prime_fragment	FALSE	canonical	2	3	junction_5	1.46249406456535	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAATTCAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34277445	34248693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_34251507_34258521_34258638_34263824_34263946_34264383_34264565_34265929_34266375_34274133_34274280_34277299
ENSMUSG00000021803.11_0	chr14	-	4156	16	NIC	ENSMUSG00000021803.11	novel	4332	17	NA	NA	74	-6	combination_of_known_splicesites	FALSE	canonical	2	3	junction_15	5.55937646383717	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGATAAACTGACCTCCC	NA	False	NA	NA	False	AATAAA	-12	NA	36820230	36799819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_36801899_36802418_36802677_36803289_36803519_36804100_36804169_36804720_36804886_36806880_36807034_36807468_36807673_36809333_36809435_36810894_36810974_36811323_36811468_36812539_36812657_36813899_36813987_36815958_36816049_36817011_36817063_36818153_36818300_36820045
ENSMUSG00000021803.11_1	chr14	-	3478	10	ISM	ENSMUSG00000021803.11	ENSMUST00000022337.11	4332	17	8844	1	8844	-1	3prime_fragment	FALSE	canonical	3	8	junction_3	6.0205409707307	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGACCTCCCGGTCC	NA	False	NA	NA	False	AATAAA	-17	NA	36811460	36799814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_36801899_36802418_36802677_36803289_36803519_36804100_36804169_36804720_36804886_36806880_36807034_36807468_36807673_36809333_36809435_36810894_36810974_36811323
ENSMUSG00000021803.11_2	chr14	-	4252	17	FSM	ENSMUSG00000021803.11	ENSMUST00000022337.11	4332	17	74	6	74	-6	multi-exon	TRUE	canonical	2	4	junction_16	5.32351798625683	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGATAAACTGACCTCCC	NA	False	NA	NA	False	AATAAA	-12	NA	36820230	36799819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_36801899_36802418_36802677_36803289_36803519_36804100_36804169_36804720_36804886_36806880_36807034_36807468_36807673_36809333_36809435_36810894_36810974_36811323_36811468_36812539_36812657_36813899_36813987_36815958_36816049_36817011_36817063_36818153_36818300_36819218_36819315_36820045
ENSMUSG00000021803.11_3	chr14	-	4066	16	ISM	ENSMUSG00000021803.11	ENSMUST00000022337.11	4332	17	996	1	996	-1	3prime_fragment	FALSE	canonical	3	8	junction_3	5.1406873729752	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGACCTCCCGGTCC	NA	False	NA	NA	False	AATAAA	-17	NA	36819308	36799814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_36801899_36802418_36802677_36803289_36803519_36804100_36804169_36804720_36804886_36806880_36807034_36807468_36807673_36809333_36809435_36810894_36810974_36811323_36811468_36812539_36812657_36813899_36813987_36815958_36816049_36817011_36817063_36818153_36818300_36819218
ENSMUSG00000021806.5_0	chr14	+	4855	21	FSM	ENSMUSG00000021806.5	ENSMUST00000022340.5	4876	21	19	2	0	-2	multi-exon	FALSE	canonical	3	1309	junction_14	132.834897523204	3195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTGGTCTAAATATCT	NA	False	NA	22	True	AATAAA	-14	NA	19801351	19861853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
ENSMUSG00000021806.5_117	chr14	+	3655	18	ISM	ENSMUSG00000021806.5	ENSMUST00000022340.5	4876	21	17321	2	349	-2	3prime_fragment	FALSE	canonical	3	1309	junction_11	128.366446693356	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTGGTCTAAATATCT	7369	False	NA	22	True	AATAAA	-14	NA	19818653	19861853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
ENSMUSG00000021807.7_0	chr14	-	985	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	7	570	7	-570	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	1237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGGCTTGTTTGTTTTGC	1695	False	NA	-28	True	AATAAA	-12	NA	19873885	19861988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
ENSMUSG00000021809.11_0	chr14	+	2007	11	NIC	ENSMUSG00000021809.11	novel	1589	10	NA	NA	5	-2	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	5.35163526410386	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCGTGTGAAGGTATATT	NA	False	NA	NA	False	NA	NA	NA	20344769	20366828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_20344861_20345155_20345335_20350654_20350748_20354020_20354161_20356299_20356435_20357300_20357433_20357760_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
ENSMUSG00000021809.11_10	chr14	+	1342	5	ISM	ENSMUSG00000021809.11	ENSMUST00000223663.2	1633	10	12654	-27	-3139	-1	3prime_fragment	FALSE	canonical	3	14	junction_3	1.08972473588517	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTGACTGATGAGATGC	9104	False	NA	NA	False	NA	NA	NA	20357418	20366591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
ENSMUSG00000021809.11_12	chr14	+	1869	10	NIC	ENSMUSG00000021809.11	novel	1633	10	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	5.20920363099157	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCGTGTGAAGGTATATT	NA	False	NA	NA	False	NA	NA	NA	20344775	20366828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_20344861_20345155_20345335_20350654_20350748_20354020_20354161_20356299_20356435_20357760_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
ENSMUSG00000021809.11_20	chr14	+	1705	2	FSM	ENSMUSG00000021809.11	ENSMUST00000225728.2	375	2	-773	-557	166	-4	multi-exon	FALSE	canonical	3	17	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTCGTGTGAAGGTATA	NA	False	NA	NA	False	NA	NA	NA	20360723	20366826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20361694_20366091
ENSMUSG00000021809.11_3	chr14	+	1730	9	NIC	ENSMUSG00000021809.11	novel	2494	9	NA	NA	-7	-2	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	4.29934588047996	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCGTGTGAAGGTATATT	NA	False	NA	NA	False	NA	NA	NA	20344774	20366828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_20344861_20354020_20354161_20356299_20356435_20357300_20357433_20357760_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
ENSMUSG00000021809.11_5	chr14	+	1666	9	FSM	ENSMUSG00000021809.11	ENSMUST00000022343.6	2494	9	1	827	0	-11	multi-exon	FALSE	canonical	2	6	junction_1	3.70809924354783	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTTCGAATTCGTGTGA	NA	False	NA	NA	False	NA	NA	NA	20344790	20366819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20344861_20350654_20350748_20354020_20354161_20356299_20356435_20357760_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
ENSMUSG00000021810.4_1	chr14	-	2663	14	FSM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	61	408	6	-408	multi-exon	FALSE	canonical	3	477	junction_8	30.9081479462529	955	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTAGTGTTCAGTCTG	NA	False	NA	-9	True	AATAGA	-8	NA	20398128	20370327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
ENSMUSG00000021811.8_0	chr14	-	511	1	ISM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	3537	225	3028	-225	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTCTGGTGGATTATTT	NA	False	NA	-19	True	AATAAA	-12	NA	20435441	20434930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20434900_20435400
ENSMUSG00000021811.8_1	chr14	-	1358	5	FSM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	41	232	7	-232	multi-exon	TRUE	canonical	3	896	junction_2	62.1711347813437	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACAAAGGTCTGGTGG	NA	False	NA	-26	True	AATAAA	-5	NA	20438937	20434937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20435547_20435867_20435955_20438024_20438280_20438367_20438509_20438671
ENSMUSG00000021814.18_1	chr14	-	1749	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	192	910	0	359	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCTGTTTAATGTTAAAA	8170	False	NA	-20	True	AATAAA	-17	NA	20530009	20506237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
ENSMUSG00000021814.18_3	chr14	-	1705	12	ISM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	6579	893	-1869	359	3prime_fragment	FALSE	canonical	3	720	junction_8	88.8280910076656	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCTGTTTAATGTTAAAA	8456	False	NA	-20	True	AATAAA	-17	NA	20523400	20506237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342
ENSMUSG00000021814.18_5	chr14	-	1798	13	FSM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	36	893	33	359	multi-exon	FALSE	canonical	3	93	junction_12	241.43268845696	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCTGTTTAATGTTAAAA	8236	False	NA	-20	True	AATAAA	-17	NA	20529943	20506237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
ENSMUSG00000021816.12_0	chr14	-	3110	13	NIC	ENSMUSG00000021816.12	novel	3074	13	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	55.7529271777625	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTGTGTTGGGTTTTAT	NA	False	NA	-1	True	AATAAA	-25	NA	20596619	20550097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_20551731_20558691_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ENSMUSG00000021816.12_1	chr14	-	3136	14	FSM	ENSMUSG00000021816.12	ENSMUST00000161445.8	3298	14	0	162	0	0	multi-exon	FALSE	canonical	3	82	junction_1	49.8631262652749	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTGTGTTGGGTTTTAT	NA	False	NA	-1	True	AATAAA	-25	NA	20596615	20550097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20551731_20553314_20553345_20558691_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ENSMUSG00000021816.12_13	chr14	-	3107	13	FSM	ENSMUSG00000021816.12	ENSMUST00000022355.11	3074	13	-33	0	2	0	multi-exon	FALSE	canonical	3	28	junction_1	56.1047507396259	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTGTGTTGGGTTTTAT	NA	False	NA	-1	True	AATAAA	-25	NA	20596613	20550097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20551731_20558691_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ENSMUSG00000021816.12_3	chr14	-	1241	1	ISM	ENSMUSG00000021816.12	ENSMUST00000159027.8	3831	14	45303	666	2500	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTGTGTTGGGTTTTAT	NA	False	NA	-1	True	AATAAA	-25	NA	20551338	20550097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20550100_20551300
ENSMUSG00000021816.12_34	chr14	-	2429	12	FSM	ENSMUSG00000021816.12	ENSMUST00000161989.2	2322	12	-113	6	-6	-6	multi-exon	FALSE	canonical	3	102	junction_2	32.8535442821749	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTCCTGTAATCTGG	NA	False	NA	-13	True	AATAAA	-13	NA	20596621	20557744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ENSMUSG00000021816.12_35	chr14	-	2418	12	ISM	ENSMUSG00000021816.12	ENSMUST00000161445.8	3298	14	2	7809	2	-6	5prime_fragment	FALSE	canonical	3	105	junction_2	32.0745515869534	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTCCTGTAATCTGG	NA	False	NA	-13	True	AATAAA	-13	NA	20596613	20557744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ENSMUSG00000021816.12_5	chr14	-	3141	14	FSM	ENSMUSG00000021816.12	ENSMUST00000159027.8	3831	14	24	666	-2	0	multi-exon	FALSE	canonical	3	82	junction_1	50.211858850582	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTGTGTTGGGTTTTAT	NA	False	NA	-1	True	AATAAA	-25	NA	20596617	20550097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20551731_20553314_20553345_20558691_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
ENSMUSG00000021819.12_0	chr14	+	6054	26	FSM	ENSMUSG00000021819.12	ENSMUST00000022358.9	6073	26	17	2	17	-1	multi-exon	FALSE	canonical	3	22	junction_9	13.1390106172421	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTCTGGGTCTTTGCCT	NA	False	NA	15	True	TATAAA	-23	NA	20757636	20773685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20758125_20760704_20760859_20761095_20761191_20761525_20761699_20761858_20761967_20762104_20762187_20762309_20762431_20763043_20763246_20763397_20763574_20763950_20764936_20766019_20766152_20766289_20766470_20766566_20766751_20766977_20767077_20767935_20768061_20768494_20768736_20768827_20768987_20769064_20769294_20769447_20769741_20769880_20770105_20771238_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772895_20773075_20773206
ENSMUSG00000021819.12_16	chr14	+	5143	22	ISM	ENSMUSG00000021819.12	ENSMUST00000022358.9	6073	26	4240	2	-307	-1	3prime_fragment	FALSE	canonical	3	22	junction_5	12.9306540460627	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTCTGGGTCTTTGCCT	NA	False	NA	15	True	TATAAA	-23	NA	20761859	20773685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20761967_20762104_20762187_20762309_20762431_20763043_20763246_20763397_20763574_20763950_20764936_20766019_20766152_20766289_20766470_20766566_20766751_20766977_20767077_20767935_20768061_20768494_20768736_20768827_20768987_20769064_20769294_20769447_20769741_20769880_20770105_20771238_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772895_20773075_20773206
ENSMUSG00000021819.12_18	chr14	+	4123	17	ISM	ENSMUSG00000021819.12	ENSMUST00000022358.9	6073	26	6663	2	-1060	-1	3prime_fragment	FALSE	canonical	3	24	junction_1	11.5174799218405	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTCTGGGTCTTTGCCT	NA	False	NA	15	True	TATAAA	-23	NA	20764282	20773685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20764936_20766019_20766152_20766289_20766470_20766566_20766751_20766977_20767077_20767935_20768061_20768494_20768736_20768827_20768987_20769064_20769294_20769447_20769741_20769880_20770105_20771238_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772895_20773075_20773206
ENSMUSG00000021819.12_20	chr14	+	5329	6	NIC	ENSMUSG00000021819.12	novel	4288	15	NA	NA	-880	0	intron_retention	FALSE	canonical	3	49	junction_3	5.2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCTGGGTCTTTGCCTT	NA	False	NA	16	True	TATAAA	-24	NA	20767788	20773686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_20768736_20768827_20768987_20769064_20769294_20769447_20772098_20772210_20773075_20773206
ENSMUSG00000021819.12_23	chr14	+	2455	10	ISM	ENSMUSG00000021819.12	ENSMUST00000223840.2	5674	27	10961	6	39	-5	3prime_fragment	FALSE	canonical	3	31	junction_3	9.79795897113271	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTATTTTCTGGGTCTTT	NA	False	NA	11	True	TATAAA	-19	NA	20768877	20773681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20768987_20769064_20769294_20769447_20769741_20769880_20770105_20771238_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772895_20773075_20773206
ENSMUSG00000021819.12_25	chr14	+	1972	7	ISM	ENSMUSG00000021819.12	ENSMUST00000223782.2	4288	15	4390	5	894	-5	3prime_fragment	FALSE	canonical	3	49	junction_1	5.85234995535981	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTATTTTCTGGGTCTTT	NA	False	NA	11	True	TATAAA	-19	NA	20769732	20773681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20770105_20771238_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772895_20773075_20773206
ENSMUSG00000021819.12_29	chr14	+	1550	6	ISM	ENSMUSG00000021819.12	ENSMUST00000223782.2	4288	15	5951	0	55	0	3prime_fragment	FALSE	canonical	3	49	junction_3	5.56417109729742	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCTGGGTCTTTGCCTT	NA	False	NA	16	True	TATAAA	-24	NA	20771293	20773686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772895_20773075_20773206
ENSMUSG00000021819.12_30	chr14	+	6095	26	NIC	ENSMUSG00000021819.12	novel	6073	26	NA	NA	-4	-5	intron_retention	TRUE	canonical	2	6	junction_22	14.5428470390086	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTATTTTCTGGGTCTTT	NA	False	NA	11	True	TATAAA	-19	NA	20757615	20773681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_20758125_20760704_20760859_20761095_20761191_20761525_20761699_20761858_20761967_20762104_20762187_20762309_20762431_20763043_20763246_20763397_20763574_20763950_20764936_20766019_20766152_20766289_20766470_20766566_20766751_20766977_20767077_20767935_20768061_20768494_20768736_20768827_20768987_20769064_20769294_20769447_20769741_20769880_20770105_20771238_20771728_20771937_20772122_20772210_20772388_20772527_20772648_20772895_20773075_20773206
ENSMUSG00000021819.12_34	chr14	+	5262	23	ISM	ENSMUSG00000021819.12	ENSMUST00000022358.9	6073	26	3957	6	-590	-5	3prime_fragment	FALSE	canonical	3	22	junction_6	12.8204382282212	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTATTTTCTGGGTCTTT	NA	False	NA	11	True	TATAAA	-19	NA	20761576	20773681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20761699_20761858_20761967_20762104_20762187_20762309_20762431_20763043_20763246_20763397_20763574_20763950_20764936_20766019_20766152_20766289_20766470_20766566_20766751_20766977_20767077_20767935_20768061_20768494_20768736_20768827_20768987_20769064_20769294_20769447_20769741_20769880_20770105_20771238_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772895_20773075_20773206
ENSMUSG00000021819.12_9	chr14	+	5952	27	FSM	ENSMUSG00000021819.12	ENSMUST00000223840.2	5674	27	-279	1	18	0	multi-exon	FALSE	canonical	1	2	junction_10	14.9155909058611	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCTGGGTCTTTGCCTT	NA	False	NA	16	True	TATAAA	-24	NA	20757637	20773686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20758125_20760704_20760859_20761095_20761191_20761525_20761699_20761858_20761967_20762104_20762187_20762309_20762431_20763043_20763246_20763397_20763574_20763950_20764637_20764738_20764936_20766019_20766152_20766289_20766470_20766566_20766751_20766977_20767077_20767935_20768061_20768494_20768736_20768827_20768987_20769064_20769294_20769447_20769741_20769880_20770105_20771238_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772895_20773075_20773206
ENSMUSG00000021820.19_0	chr14	-	3559	19	FSM	ENSMUSG00000021820.19	ENSMUST00000100837.11	3564	19	-3	8	0	0	multi-exon	FALSE	canonical	3	16	junction_6	6.2610396328366	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCCATTGTGTTATT	NA	False	NA	-8	True	AATAAA	-10	NA	20844122	20784950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
ENSMUSG00000021820.19_1	chr14	-	3679	20	NIC	ENSMUSG00000021820.19	novel	1937	22	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	10.4229131778775	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATTGTGTTATTGCTGTT	NA	False	NA	-2	True	AATAAA	-16	NA	20844122	20784944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20791445_20791560_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
ENSMUSG00000021820.19_10	chr14	-	2132	2	ISM	ENSMUSG00000021820.19	ENSMUST00000223863.2	663	4	1981	-1730	1951	-4	3prime_fragment	FALSE	canonical	3	28	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCATTGTGTTATTGCTG	6569	False	NA	-4	True	AATAAA	-14	NA	20787484	20784946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20786921_20787326
ENSMUSG00000021820.19_14	chr14	-	3335	6	ISM	ENSMUSG00000021820.19	ENSMUST00000080440.14	3604	20	48527	0	-6106	0	3prime_fragment	FALSE	canonical	3	28	junction_1	2.24499443206436	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCCATTGTGTTATT	NA	False	NA	-8	True	AATAAA	-10	NA	20795571	20784950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671
ENSMUSG00000021820.19_15	chr14	-	3612	20	NIC	ENSMUSG00000021820.19	novel	3604	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	11.2212698705149	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCCATTGTGTTATT	NA	False	NA	-8	True	AATAAA	-10	NA	20844098	20784950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_20786921_20787326_20787572_20788908_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
ENSMUSG00000021820.19_2	chr14	-	1188	1	ISM	ENSMUSG00000021820.19	ENSMUST00000100837.11	3564	19	57989	0	3305	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTTATTGCTGTTGG	7923	False	NA	0	True	AATAAA	-18	NA	20786130	20784942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20784900_20786100
ENSMUSG00000021820.19_3	chr14	-	3611	20	FSM	ENSMUSG00000021820.19	ENSMUST00000080440.14	3604	20	-7	0	-7	0	multi-exon	FALSE	canonical	2	6	junction_6	9.18507762457831	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCCATTGTGTTATT	NA	False	NA	-8	True	AATAAA	-10	NA	20844105	20784950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
ENSMUSG00000021820.19_4	chr14	-	3707	20	NIC	ENSMUSG00000021820.19	novel	1937	22	NA	NA	15	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	12.0912962904471	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGTGTTATTGCTGTTG	NA	False	NA	-1	True	AATAAA	-17	NA	20844141	20784943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_20786921_20787326_20787572_20788908_20789012_20789394_20789471_20791445_20791560_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
ENSMUSG00000021820.19_7	chr14	-	3710	21	NIC	ENSMUSG00000021820.19	novel	1937	22	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	11.7867510366513	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTTTAAACAGTCCATTG	NA	False	NA	-15	True	AATAAA	-3	NA	20844097	20784957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20791445_20791560_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
ENSMUSG00000021823.11_0	chr14	+	5231	21	FSM	ENSMUSG00000021823.11	ENSMUST00000022369.9	5267	21	28	8	28	-8	multi-exon	TRUE	canonical	3	265	junction_11	15.7968351260624	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATAATGCTCTAATTGA	NA	False	NA	NA	False	AATAAA	-11	NA	20979493	21083736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20979757_21017605_21017677_21032641_21032793_21033435_21033545_21035694_21035818_21037025_21037187_21045079_21045171_21045912_21046061_21051198_21051353_21053162_21053339_21057181_21057373_21058928_21059129_21060105_21060235_21064978_21065129_21069347_21069457_21070546_21070850_21072070_21072196_21074173_21074360_21079243_21079448_21079849_21079955_21081654
ENSMUSG00000021823.11_38	chr14	+	1485	1	ISM	ENSMUSG00000021823.11	ENSMUST00000022369.9	5267	21	102784	10	10179	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAATAATGCTCTAATT	5226	False	NA	NA	False	AATAAA	-9	NA	21082249	21083734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_21082200_21083700
ENSMUSG00000021824.14_0	chr14	-	3108	9	FSM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	251	3373	-4	1199	multi-exon	FALSE	canonical	3	207	junction_8	42.1092329543059	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACCAAATGATTTTTAAAG	NA	False	NA	-16	True	AATAAA	-9	NA	21102267	21084882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
ENSMUSG00000021824.14_15	chr14	-	3305	9	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-32	1199	combination_of_known_junctions	FALSE	canonical	3	5	junction_8	101.806188417011	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACCAAATGATTTTTAAAG	NA	False	NA	-16	True	AATAAA	-9	NA	21102220	21084882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21101963
ENSMUSG00000021824.14_2	chr14	-	3084	9	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	18	1199	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	95.1609656056516	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACCAAATGATTTTTAAAG	NA	False	NA	-16	True	AATAAA	-9	NA	21102558	21084882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102522
ENSMUSG00000021824.14_4	chr14	-	1445	1	ISM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	16191	3373	15818	1199	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACCAAATGATTTTTAAAG	NA	False	NA	-16	True	AATAAA	-9	NA	21086327	21084882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_21084900_21086300
ENSMUSG00000021824.14_9	chr14	-	2661	7	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-7	1197	combination_of_known_junctions	FALSE	canonical	3	34	junction_6	106.531163932855	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAACCAAATGATTTTTAA	NA	False	NA	-18	True	AATAAA	-7	NA	21102270	21084884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21102207
ENSMUSG00000021830.15_10	chr14	-	3470	21	NIC	ENSMUSG00000021830.15	novel	5045	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_20	9.22212014669078	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATATTCTTTTGCA	NA	False	NA	NA	False	ATTAAA	-41	NA	45456882	45372363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_45373428_45377874_45378066_45379429_45379591_45382398_45382538_45385285_45385371_45388794_45388932_45389214_45389384_45398790_45398851_45399696_45399841_45400388_45400513_45402803_45402865_45403183_45403351_45406694_45406846_45409970_45410062_45420502_45420625_45442798_45442874_45444185_45444260_45448612_45448696_45450742_45450982_45456452_45456507_45456803
ENSMUSG00000021830.15_15	chr14	-	3869	22	NIC	ENSMUSG00000021830.15	novel	4069	24	NA	NA	5	-1	intron_retention	FALSE	canonical	2	4	junction_20	9.63859400177566	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAAATATTCTTTTGC	NA	False	NA	NA	False	ATTAAA	-40	NA	45456877	45372364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_45373431_45377874_45378066_45379429_45379591_45382398_45382538_45385285_45385371_45388794_45388932_45389214_45389384_45398790_45398851_45399696_45399841_45400388_45400513_45402803_45402865_45403183_45403351_45406694_45406846_45409970_45410062_45420502_45420625_45442798_45442874_45444185_45444260_45448612_45448696_45450742_45450982_45455227_45455500_45456452_45456507_45456673
ENSMUSG00000021830.15_3	chr14	-	3584	21	FSM	ENSMUSG00000021830.15	ENSMUST00000022377.11	4028	21	-15	459	-7	0	multi-exon	TRUE	canonical	3	11	junction_1	7.23100961138899	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATATTCTTTTGCA	NA	False	NA	NA	False	ATTAAA	-41	NA	45456866	45372363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_45373428_45377874_45378066_45379429_45379591_45382398_45382538_45385285_45385371_45388794_45388932_45389214_45389384_45398790_45398851_45399696_45399841_45400388_45400513_45402803_45402865_45403183_45403351_45406694_45406846_45409970_45410062_45420502_45420625_45442798_45442874_45444185_45444260_45448612_45448696_45450742_45450982_45456452_45456507_45456673
ENSMUSG00000021830.15_4	chr14	-	3587	21	FSM	ENSMUSG00000021830.15	ENSMUST00000139526.9	5045	21	16	1442	-7	0	multi-exon	FALSE	canonical	3	25	junction_19	5.21152568831815	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATATTCTTTTGCA	NA	False	NA	NA	False	ATTAAA	-41	NA	45456866	45372363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_45373431_45377874_45378066_45379429_45379591_45382398_45382538_45385285_45385371_45388794_45388932_45389214_45389384_45398790_45398851_45399696_45399841_45400388_45400513_45402803_45402865_45403183_45403351_45406694_45406846_45409970_45410062_45420502_45420625_45442798_45442874_45444185_45444260_45448612_45448696_45450742_45450982_45456452_45456507_45456673
ENSMUSG00000021831.10_0	chr14	-	4271	16	FSM	ENSMUSG00000021831.10	ENSMUST00000022378.9	4418	16	35	112	35	-112	multi-exon	FALSE	canonical	2	315	junction_8	121.531596257471	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCTTCACATGACAGCTG	NA	False	NA	-23	True	NA	NA	NA	45555994	45520655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_45523546_45525189_45525324_45525432_45525520_45529818_45529889_45530387_45530635_45531760_45531854_45531967_45531995_45533428_45533441_45536502_45536541_45537298_45537420_45539149_45539224_45539305_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45555833
ENSMUSG00000021831.10_1	chr14	-	2091	1	ISM	ENSMUSG00000021831.10	ENSMUST00000022378.9	4418	16	33296	99	13789	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGTTCTGACTGCAGG	7533	False	NA	-10	True	NA	NA	NA	45522733	45520642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_45520600_45522700
ENSMUSG00000021831.10_5	chr14	-	4257	15	NIC	ENSMUSG00000021831.10	novel	4418	16	NA	NA	35	-114	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	176.639737711466	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCTTCACATGACAGC	NA	False	NA	-25	True	NA	NA	NA	45555994	45520657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_45523546_45525189_45525324_45525432_45525520_45529818_45529889_45530387_45530635_45531760_45531854_45531967_45531995_45536502_45536541_45537298_45537420_45539149_45539224_45539305_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45555833
ENSMUSG00000021832.9_0	chr14	+	1556	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	43	635	3	-635	multi-exon	FALSE	canonical	3	1632	junction_5	93.5359944006622	1083	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATATACTCTTGTCTTTT	NA	False	NA	27	True	AATAAA	-19	NA	45567287	45586527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
ENSMUSG00000021835.16_0	chr14	-	1979	4	FSM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	76	9	-43	-9	multi-exon	FALSE	canonical	3	24	junction_3	6.0184900284226	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGATAAACTAAGACCTTT	6441	False	NA	NA	False	AATAAA	-16	NA	46628050	46620985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_46622170_46623171_46623552_46624612_46624738_46627760
ENSMUSG00000021835.16_1	chr14	-	1700	3	ISM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	3378	9	13	-9	3prime_fragment	FALSE	canonical	3	35	junction_2	1.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGATAAACTAAGACCTTT	9743	False	NA	NA	False	AATAAA	-16	NA	46624748	46620985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_46622170_46623171_46623552_46624612
ENSMUSG00000021835.16_4	chr14	-	1187	1	ISM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	5960	3	2595	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAAGACCTTTCTATCT	NA	False	NA	NA	False	AATAAA	-22	NA	46622166	46620979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_46621000_46622200
ENSMUSG00000021840.18_0	chr14	+	2270	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	18	2254	18	-2254	multi-exon	FALSE	canonical	3	218	junction_2	12.2836838484589	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAGGTAGAGGAACTCC	9648	False	NA	NA	False	ATTAAA	-45	NA	47535743	47558298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
ENSMUSG00000021840.18_1	chr14	+	4484	5	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	18	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	99.1548662446781	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCATGGTTTCTTTGTGT	9648	False	NA	3	True	AAGAAA	-14	NA	47535743	47560548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868_47557354_47557389
ENSMUSG00000021840.18_38	chr14	+	2082	1	ISM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	22741	4	10062	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCATGGTTTCTTTGTGT	NA	False	NA	3	True	AAGAAA	-14	NA	47558466	47560548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_47558500_47560500
ENSMUSG00000021840.18_6	chr14	+	4482	5	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	18	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	99.1548662446781	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCATGGTTTCTTTGTGT	9648	False	NA	3	True	AAGAAA	-14	NA	47535743	47560548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868_47557354_47557391
ENSMUSG00000021843.18_11	chr14	+	4312	40	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	20	-4	combination_of_known_junctions	FALSE	canonical	3	405	junction_36	132.185085310088	118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAACATGACTCACTCTG	NA	False	NA	13	True	AATAAA	-13	NA	47886792	47974010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ENSMUSG00000021843.18_14	chr14	+	4237	39	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	256	junction_23	152.220744725066	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886787	47974014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ENSMUSG00000021843.18_15	chr14	+	4316	40	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	19	-4	combination_of_known_junctions	FALSE	canonical	3	256	junction_23	152.349273439967	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAACATGACTCACTCTG	NA	False	NA	13	True	AATAAA	-13	NA	47886791	47974010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ENSMUSG00000021843.18_22	chr14	+	4234	39	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	15	0	combination_of_known_junctions	TRUE	canonical	3	354	junction_31	131.105569523613	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886787	47974014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ENSMUSG00000021843.18_26	chr14	+	4164	38	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	3	256	junction_23	141.712210556787	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886788	47974014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ENSMUSG00000021843.18_3	chr14	+	4303	40	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	16	-2	combination_of_known_junctions	FALSE	canonical	3	329	junction_35	142.357057734826	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACATGACTCACTCTGAT	NA	False	NA	15	True	AATAAA	-15	NA	47886788	47974012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ENSMUSG00000021843.18_33	chr14	+	4229	39	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	34	-4	combination_of_known_junctions	FALSE	canonical	3	256	junction_23	142.486178072921	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAACATGACTCACTCTG	NA	False	NA	13	True	AATAAA	-13	NA	47886806	47974010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ENSMUSG00000021843.18_43	chr14	+	4392	41	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	3	329	junction_36	142.740216389776	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886788	47974014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ENSMUSG00000021846.10_0	chr14	+	1818	6	FSM	ENSMUSG00000021846.10	ENSMUST00000073150.6	5900	6	20	4062	20	2	multi-exon	FALSE	canonical	3	56	junction_4	6.58483105326173	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTCAACTGCCATGCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	48358299	48494283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_48358691_48405653_48405784_48477666_48477769_48487966_48488162_48490033_48490223_48493472
ENSMUSG00000021846.10_1	chr14	+	1697	5	FSM	ENSMUSG00000021846.10	ENSMUST00000226828.2	3527	5	-42	1872	4	-5	multi-exon	FALSE	canonical	0	0	junction_1	29.5972971738975	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATTGGATCTCAACTGC	NA	False	NA	NA	False	ATTAAA	-16	NA	48358283	48494276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_48358691_48477666_48477769_48487966_48488162_48490033_48490223_48493472
ENSMUSG00000021846.10_13	chr14	+	3438	1	ISM	ENSMUSG00000021846.10	ENSMUST00000073150.6	5900	6	136404	224	58511	-224	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAAGTTGTCTTTAGACT	NA	False	NA	5	True	ATTAAA	-16	NA	48494683	48498121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_48494700_48498100
ENSMUSG00000021848.17_1	chr14	-	736	1	ISM	ENSMUSG00000021848.17	ENSMUST00000226501.2	2592	6	9101	2	3518	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGGGTCTAGTTTAAT	NA	False	NA	-3	True	ATTAAA	-14	NA	48895871	48895135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_48895100_48895900
ENSMUSG00000021848.17_2	chr14	-	2050	4	NNC	ENSMUSG00000021848.17	novel	2144	4	NA	NA	-86	-2	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	13.7194104181711	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTTGGGTCTAGTTTA	NA	False	NA	-5	True	ATTAAA	-12	NA	48900415	48895137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_48896784_48898755_48898908_48899900_48900117_48900379
ENSMUSG00000021848.17_3	chr14	-	2105	3	FSM	ENSMUSG00000021848.17	ENSMUST00000122009.8	1737	3	122	-490	122	-2	multi-exon	FALSE	canonical	3	33	junction_2	5.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTTGGGTCTAGTTTA	NA	False	NA	-5	True	ATTAAA	-12	NA	48900207	48895137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_48896784_48898755_48898908_48899900
ENSMUSG00000021848.17_4	chr14	-	2175	4	FSM	ENSMUSG00000021848.17	ENSMUST00000118578.9	2144	4	-31	0	-31	0	multi-exon	FALSE	canonical	2	4	junction_3	16.8720676464584	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGGGTCTAGTTTAAT	NA	False	NA	-3	True	ATTAAA	-14	NA	48902594	48895135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_48896784_48898755_48898908_48899900_48900117_48902435
ENSMUSG00000021848.17_6	chr14	-	2127	3	ISM	ENSMUSG00000021848.17	ENSMUST00000119070.8	1708	5	4765	-490	124	-2	3prime_fragment	FALSE	canonical	3	9	junction_2	17.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTTGGGTCTAGTTTA	NA	False	NA	-5	True	ATTAAA	-12	NA	48900205	48895137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_48896784_48898755_48898932_48899900
ENSMUSG00000021848.17_9	chr14	-	1917	2	ISM	ENSMUSG00000021848.17	ENSMUST00000135279.2	737	3	363	-1235	363	-2	3prime_fragment	FALSE	canonical	3	44	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTTGGGTCTAGTTTA	NA	False	NA	-5	True	ATTAAA	-12	NA	48899026	48895137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_48896784_48898755
ENSMUSG00000021866.16_0	chr14	+	2341	15	FSM	ENSMUSG00000021866.16	ENSMUST00000022416.15	2394	15	36	17	9	-17	multi-exon	TRUE	canonical	3	387	junction_6	25.4603533329122	560	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTCTGGAAATGTCTTT	11	True	NA	9	True	AATAAA	-17	NA	25842615	25887211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
ENSMUSG00000021868.8_0	chr14	+	1555	6	FSM	ENSMUSG00000021868.8	ENSMUST00000022419.7	1549	6	-12	6	4	-2	multi-exon	FALSE	canonical	3	443	junction_3	21.4532048887806	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAATGGCTGTCTCTGGT	380	False	NA	NA	False	AATAAA	-12	NA	25694581	25700886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_25694848_25695896_25695928_25696427_25696517_25697996_25698094_25698689_25698766_25699890
ENSMUSG00000021868.8_1	chr14	+	978	1	ISM	ENSMUSG00000021868.8	ENSMUST00000125881.2	3637	4	5333	0	5293	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGGCTGTCTCTGGTTT	5709	False	NA	NA	False	AATAAA	-14	NA	25699910	25700888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_25699900_25700900
ENSMUSG00000021868.8_3	chr14	+	1459	5	NIC	ENSMUSG00000021868.8	novel	1549	6	NA	NA	3	-2	combination_of_known_splicesites	FALSE	canonical	3	49	junction_3	185.642633842552	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAATGGCTGTCTCTGGT	379	False	NA	NA	False	AATAAA	-12	NA	25694580	25700886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_25694848_25695896_25695928_25696427_25696517_25698689_25698766_25699890
ENSMUSG00000021870.18_0	chr14	-	5505	25	NIC	ENSMUSG00000021870.18	novel	5476	24	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	61.4828340993556	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATGTTTGAGTTGTAC	NA	False	NA	-5	True	AATAAA	-17	NA	26256058	26134328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26174692_26174756_26180564_26180616_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
ENSMUSG00000021870.18_1	chr14	-	5437	24	FSM	ENSMUSG00000021870.18	ENSMUST00000102956.8	5476	24	32	7	-4	0	multi-exon	FALSE	canonical	3	93	junction_11	42.4199902941944	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCATGTTTGAGTTGTA	NA	False	NA	-6	True	AATAAA	-16	NA	26256054	26134329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26180564_26180616_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
ENSMUSG00000021870.18_2	chr14	-	5384	23	NIC	ENSMUSG00000021870.18	novel	5476	24	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	49.6311394187157	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCATGTTTGAGTTGTA	NA	False	NA	-6	True	AATAAA	-16	NA	26256052	26134329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
ENSMUSG00000021870.18_26	chr14	-	1099	1	ISM	ENSMUSG00000021870.18	ENSMUST00000102956.8	5476	24	120659	6	15829	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATGTTTGAGTTGTAC	NA	False	NA	-5	True	AATAAA	-17	NA	26135427	26134328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_26134300_26135400
ENSMUSG00000021870.18_3	chr14	-	5333	22	NIC	ENSMUSG00000021870.18	novel	5476	24	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	90	junction_11	32.5658586159231	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCATGTTTGAGTTGTA	NA	False	NA	-6	True	AATAAA	-16	NA	26256052	26134329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
ENSMUSG00000021870.18_5	chr14	-	5056	21	NIC	ENSMUSG00000021870.18	novel	4501	23	NA	NA	498	0	combination_of_known_junctions	FALSE	canonical	3	90	junction_11	33.3543100663168	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCATGTTTGAGTTGTA	NA	False	NA	-6	True	AATAAA	-16	NA	26255552	26134329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482
ENSMUSG00000021871.20_0	chr14	+	1662	5	ISM	ENSMUSG00000115338.3	ENSMUST00000048615.13	2942	6	260	1401	1	1117	intron_retention	FALSE	canonical	3	117	junction_1	42.0081837265074	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGTGTGTGGTTCGGT	9290	False	NA	4	True	AATAAA	-16	NA	51182018	51189468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_51182051_51185308_51185479_51187714_51187819_51187999_51188176_51188288
ENSMUSG00000021876.16_0	chr14	+	1300	2	FSM	ENSMUSG00000021876.16	ENSMUST00000022428.13	1518	2	51	167	51	-167	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAACATATTGCCAAAAT	NA	False	NA	NA	False	NA	NA	NA	51328584	51343437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_51328711_51342263
ENSMUSG00000021876.16_1	chr14	+	1146	1	ISM	ENSMUSG00000021876.16	ENSMUST00000022428.13	1518	2	13755	170	8473	-170	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAACAACATATTGCCAA	NA	False	NA	NA	False	NA	NA	NA	51342288	51343434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_51342300_51343400
ENSMUSG00000021877.13_0	chr14	+	1676	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	66	423	66	21	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	1671	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACATGATTGTGTGTT	1752	False	NA	-1	True	AATAAA	-9	NA	26359294	26377990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
ENSMUSG00000021884.19_1	chr14	-	1989	17	FSM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	-3	658	-3	112	multi-exon	FALSE	canonical	3	36	junction_9	6.10199762372946	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACTTTGGTTTTGTTTTG	6942	False	NA	NA	False	AGTAAA	-28	NA	31362924	31329813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
ENSMUSG00000021884.19_10	chr14	-	2442	8	ISM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	56	17405	3	1822	5prime_fragment	FALSE	canonical	3	46	junction_3	2.77010277566647	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTACTGTTTGTTGTTTGGT	7001	False	NA	NA	False	ACTAAA	-18	NA	31362865	31346560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
ENSMUSG00000021884.19_13	chr14	-	982	6	ISM	ENSMUSG00000021884.19	ENSMUST00000165955.8	1500	14	21721	-154	-4846	112	3prime_fragment	FALSE	canonical	3	47	junction_3	3.07245829914744	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACTTTGGTTTTGTTTTG	NA	False	NA	NA	False	AGTAAA	-28	NA	31341114	31329813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928
ENSMUSG00000021884.19_3	chr14	-	1929	17	NIC	ENSMUSG00000021884.19	novel	2644	17	NA	NA	4	114	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	13.265910259006	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTGGTTTTGTTTTGTT	6627	False	NA	NA	False	AGTAAA	-30	NA	31363239	31329811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31363122
ENSMUSG00000021884.19_6	chr14	-	2157	15	NIC	ENSMUSG00000021884.19	novel	1699	16	NA	NA	-3	109	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	13.7716434482347	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATAACTTTGGTTTTGTT	6649	False	NA	NA	False	AGTAAA	-25	NA	31363217	31329816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31362450_31362556_31362745
ENSMUSG00000021890.7_0	chr14	+	3998	6	FSM	ENSMUSG00000021890.7	ENSMUST00000022446.7	4918	6	740	180	-57	-180	multi-exon	FALSE	canonical	3	223	junction_4	16.2357629940819	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATATTTAATGTCTTGTT	6342	False	NA	NA	False	AATAAA	-14	NA	31217095	31231635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_31217329_31219665_31219761_31222076_31222214_31224219_31224411_31226243_31226478_31228527
ENSMUSG00000021890.7_19	chr14	+	2195	1	ISM	ENSMUSG00000021890.7	ENSMUST00000022446.7	4918	6	13085	180	1255	-180	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATATTTAATGTCTTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	31229440	31231635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_31229400_31231600
ENSMUSG00000021891.9_14	chr14	-	3080	5	NIC	ENSMUSG00000021891.9	novel	3946	6	NA	NA	2	780	intron_retention	FALSE	canonical	3	247	junction_4	13.3603892158874	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGCACACTAACCGGGTG	NA	False	NA	-11	True	NA	NA	NA	31216976	31200761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31215922_31216858
ENSMUSG00000021891.9_3	chr14	-	2376	5	FSM	ENSMUSG00000021891.9	ENSMUST00000228727.2	2388	5	9	3	0	-2	multi-exon	FALSE	canonical	3	247	junction_4	24.3823706804732	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGAGACCTCTTTATAT	NA	False	NA	NA	False	NA	NA	NA	31216978	31203307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ENSMUSG00000021891.9_6	chr14	-	1765	6	FSM	ENSMUSG00000021891.9	ENSMUST00000055303.5	3946	6	19	2162	0	603	multi-exon	FALSE	canonical	3	247	junction_5	24.3359815910516	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGGAAAGTCTTGTGGC	NA	False	NA	14	True	AATAAA	-44	NA	31216978	31200938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ENSMUSG00000021891.9_7	chr14	-	1808	5	FSM	ENSMUSG00000021891.9	ENSMUST00000228181.2	793	5	-31	-984	-2	786	multi-exon	FALSE	canonical	3	35	junction_1	108.841628065736	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTAACCGGGTGAATGTG	NA	False	NA	-5	True	NA	NA	NA	31216980	31200755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31201768_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ENSMUSG00000021891.9_9	chr14	-	1618	5	FSM	ENSMUSG00000021891.9	ENSMUST00000227595.2	1027	5	-8	-583	1	583	multi-exon	FALSE	canonical	3	12	junction_3	105.354164606816	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAGAATTGTAAGTCC	NA	False	NA	-6	True	AATAAA	-24	NA	31216986	31200958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31215553_31215922_31216858
ENSMUSG00000021892.15_0	chr14	-	2709	9	FSM	ENSMUSG00000021892.15	ENSMUST00000091903.5	2684	9	-25	0	-12	0	multi-exon	FALSE	canonical	1	5	junction_3	1.69096865730859	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGAAAGTCCACTGTTGT	5883	False	NA	NA	False	AATAAA	-26	NA	31158047	31095741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31097159_31097560_31097822_31099347_31099568_31100234_31100278_31101345_31101477_31109675_31109841_31133497_31133627_31156039_31156103_31157767
ENSMUSG00000021893.15_0	chr14	+	3614	21	FSM	ENSMUSG00000021893.15	ENSMUST00000022451.14	3648	21	27	7	-10	-7	multi-exon	TRUE	canonical	3	214	junction_6	22.7354348979737	416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAACTATGTAGTTTAA	NA	False	NA	8	True	AATAAA	-13	NA	31058621	31093934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_31058941_31061991_31062101_31066398_31066557_31067415_31067484_31069614_31069816_31071755_31071843_31074323_31074451_31076051_31076138_31077221_31077316_31080562_31080710_31081163_31081271_31082081_31082203_31085435_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658_31092752_31092834
ENSMUSG00000021895.11_15	chr14	+	3791	13	NNC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	26934	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	17.3773479628573	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACACCTTTTCCTCCTG	NA	False	NA	NA	False	AATAAA	-8	NA	26863789	27125861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_26863950_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
ENSMUSG00000021895.11_18	chr14	+	3630	12	ISM	ENSMUSG00000021895.11	ENSMUST00000225949.2	3198	14	38061	-593	38061	-3	3prime_fragment	FALSE	canonical	3	34	junction_1	11.660486359872	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAAACACCTTTTCCTC	NA	False	NA	NA	False	AATAAA	-5	NA	26874916	27125858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
ENSMUSG00000021895.11_19	chr14	+	3637	10	FSM	ENSMUSG00000021895.11	ENSMUST00000224981.2	3618	10	-26	7	-26	0	multi-exon	FALSE	canonical	3	20	junction_1	14.3716112484489	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACACCTTTTCCTCCTG	NA	False	NA	NA	False	AATAAA	-8	NA	27057996	27125861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_27058227_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
ENSMUSG00000021895.11_20	chr14	+	1172	7	ISM	ENSMUSG00000021895.11	ENSMUST00000224981.2	3618	10	-27	9554	-27	-8951	5prime_fragment	FALSE	canonical	3	20	junction_1	15.4775823549919	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTAAGGTCCATTTGGTT	NA	False	NA	NA	False	TATAAA	-20	NA	27057995	27116314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_27058227_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889
ENSMUSG00000021895.11_27	chr14	+	2021	1	ISM	ENSMUSG00000021895.11	ENSMUST00000049206.6	3585	11	163842	3	40492	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAAACACCTTTTCCTC	8658	False	NA	NA	False	AATAAA	-5	NA	27123837	27125858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_27123800_27125900
ENSMUSG00000021895.11_3	chr14	+	3689	13	NIC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	-33	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	15.3622914957372	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACACCTTTTCCTCCTG	NA	False	NA	NA	False	AATAAA	-8	NA	26836822	27125861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_26836881_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
ENSMUSG00000021895.11_5	chr14	+	3819	14	NNC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	17.0588955433745	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACACCTTTTCCTCCTG	NA	False	NA	NA	False	AATAAA	-8	NA	26836810	27125861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_26836881_26837154_26837273_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
ENSMUSG00000021895.11_8	chr14	+	3965	13	NNC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	83	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	13.9363633069112	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACACCTTTTCCTCCTG	NA	False	NA	NA	False	AATAAA	-8	NA	26836938	27125861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_26837273_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
ENSMUSG00000021900.11_1	chr14	+	1919	4	FSM	ENSMUSG00000021900.11	ENSMUST00000090147.7	2324	4	9	396	9	-396	multi-exon	FALSE	canonical	1	3	junction_2	7.40870359029762	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATCCGCAGAATACTGG	NA	False	NA	1	True	AATAAA	-17	NA	31363022	31390140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_31363093_31384026_31384283_31387838_31387989_31388697
ENSMUSG00000021901.11_0	chr14	+	3389	17	FSM	ENSMUSG00000021901.11	ENSMUST00000022458.11	3460	17	48	23	-5	-9	multi-exon	TRUE	canonical	3	305	junction_12	31.9899886683318	733	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGATCTTCTGGTTG	NA	False	NA	2	True	AATAAA	-9	NA	30973454	30981878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978617_30978749_30979245_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
ENSMUSG00000021902.8_0	chr14	-	1984	10	FSM	ENSMUSG00000021902.8	ENSMUST00000226565.2	1971	10	-20	7	-18	0	multi-exon	FALSE	canonical	3	15	junction_2	5.27280467453541	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGGGTCTCCTTGTGAAT	NA	False	NA	-4	True	AATAAA	-13	NA	30973292	30959652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_30960111_30960293_30960440_30961587_30961695_30962230_30962391_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
ENSMUSG00000021902.8_6	chr14	-	2096	11	FSM	ENSMUSG00000021902.8	ENSMUST00000022459.5	2084	11	-13	1	-13	0	multi-exon	FALSE	canonical	3	5	junction_2	8.85945822271317	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGGGTCTCCTTGTGAAT	NA	False	NA	-4	True	AATAAA	-13	NA	30973287	30959652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_30960111_30960293_30960440_30961076_30961194_30961587_30961695_30962230_30962391_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
ENSMUSG00000021902.8_9	chr14	-	6192	1	Genic_Genomic	ENSMUSG00000021902.8	novel	NA	NA	NA	NA	-6	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAACCATTGTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30973280	30967088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_-_30967100_30973300
ENSMUSG00000021905.15_0	chr14	-	641	3	FSM	ENSMUSG00000021905.15	ENSMUST00000067955.12	2953	3	7	2305	7	2	multi-exon	FALSE	canonical	3	570	junction_1	6	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGAGTGTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	31807559	31804830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31805204_31806863_31806939_31807366
ENSMUSG00000021905.15_1	chr14	-	1919	2	FSM	ENSMUSG00000021905.15	ENSMUST00000124303.9	809	2	125	-1235	5	-954	multi-exon	FALSE	canonical	3	69	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCATTGAAGGTTTGAATT	NA	False	NA	NA	False	AATAAA	-13	NA	31807561	31803479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31805204_31807366
ENSMUSG00000021905.15_2	chr14	-	2283	2	FSM	ENSMUSG00000021905.15	ENSMUST00000112000.2	486	2	25	-1822	25	2	multi-exon	FALSE	canonical	3	582	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGAGTGTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	31807541	31804830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31806939_31807366
ENSMUSG00000021905.15_3	chr14	-	259	1	ISM	ENSMUSG00000021905.15	ENSMUST00000067955.12	2953	3	2477	2305	2154	2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGAGTGTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	31805089	31804830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_31804800_31805100
ENSMUSG00000021905.15_5	chr14	-	740	2	FSM	ENSMUSG00000021905.15	ENSMUST00000144149.2	751	2	13	-2	13	2	multi-exon	FALSE	canonical	3	570	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGAGTGTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	31807230	31804830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_31805204_31806863
ENSMUSG00000021906.15_1	chr14	+	2081	9	NIC	ENSMUSG00000021906.15	novel	2376	8	NA	NA	-3	-55	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	64.0858798800485	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTGTGTCTAGGGAAT	NA	False	NA	-35	True	CATAAA	-6	NA	31807327	31825104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_31807524_31807805_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821345_31821589_31822942_31823052_31824213
ENSMUSG00000021906.15_14	chr14	+	1822	8	NIC	ENSMUSG00000021906.15	novel	2376	8	NA	NA	-7	-88	combination_of_known_junctions	FALSE	canonical	2	23	junction_5	70.5948486297777	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTTCTTTAAATTATTG	NA	False	NA	21	True	ATTAAA	-26	NA	31807775	31825071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821405_31821589_31822942_31823052_31824213
ENSMUSG00000021906.15_2	chr14	+	1960	8	FSM	ENSMUSG00000021906.15	ENSMUST00000022462.14	2376	8	410	6	-3	-6	multi-exon	FALSE	canonical	3	171	junction_6	23.2422908000191	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGTCTTCATGTTTAATG	NA	False	NA	14	True	AATACA	-13	NA	31807779	31825153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821345_31821589_31822942_31823052_31824213
ENSMUSG00000021906.15_23	chr14	+	808	1	ISM	ENSMUSG00000021906.15	ENSMUST00000022462.14	2376	8	16948	34	1543	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATTTTAAATACAGTCT	NA	False	NA	-14	True	CATAAA	-27	NA	31824317	31825125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_31824300_31825100
ENSMUSG00000021906.15_6	chr14	+	1727	8	NIC	ENSMUSG00000021906.15	novel	2376	8	NA	NA	-2	-93	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	74.5727969223116	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGAATACTTCTTTAAAT	NA	False	NA	16	True	ATTAAA	-21	NA	31807780	31825066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821490_31821589_31822942_31823052_31824213
ENSMUSG00000021906.15_9	chr14	+	1722	7	NIC	ENSMUSG00000021906.15	novel	2376	8	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	2	7	junction_5	81.7851181790156	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATGTTTAATGTTTCA	NA	False	NA	19	True	AATACA	-18	NA	31807779	31825158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31822942_31823052_31824213
ENSMUSG00000021908.11_0	chr12	+	3310	1	FSM	ENSMUSG00000021908.11	ENSMUST00000022467.11	1878	1	-15	-1417	-15	1417	mono-exon	FALSE	NA	NA	NA	NA	NA	272	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-11	NA	119224697	119228007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_119224700_119228000
ENSMUSG00000021910.16_1	chr14	-	5434	21	FSM	ENSMUSG00000021910.16	ENSMUST00000022469.13	5559	21	119	6	18	-6	multi-exon	FALSE	canonical	3	883	junction_8	71.9902076674321	2013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAACATGAGTCTTCAAG	9440	False	NA	-10	True	AATAAA	-11	NA	30928639	30892892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_30894136_30894393_30894556_30895020_30895150_30895543_30895701_30896212_30896844_30898286_30899670_30901792_30901843_30902778_30902907_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
ENSMUSG00000021910.16_10	chr14	-	3334	6	ISM	ENSMUSG00000021910.16	ENSMUST00000168206.8	4990	17	14191	4	-751	-4	3prime_fragment	FALSE	canonical	3	963	junction_4	34.7931027647722	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACATGAGTCTTCAAGGT	NA	False	NA	-8	True	AATAAA	-13	NA	30899296	30892890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_30894136_30894393_30894556_30895020_30895150_30895543_30895701_30896212_30896844_30898286
ENSMUSG00000021910.16_93	chr14	-	2630	14	FSM	ENSMUSG00000021910.16	ENSMUST00000172142.8	2780	14	144	6	18	-6	multi-exon	TRUE	canonical	3	57	junction_1	267.283529621824	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGTGCACATCTTTT	9440	False	NA	-3	True	AATAAA	-14	NA	30928639	30905275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_30906355_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
ENSMUSG00000021911.17_1	chr14	+	4061	18	FSM	ENSMUSG00000021911.17	ENSMUST00000022470.15	4413	18	17	335	-5	-5	multi-exon	FALSE	canonical	1	134	junction_15	83.8243756407233	668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTCCCATGCCACTTA	NA	False	NA	10	True	AATAAA	-23	NA	31923922	32019172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_31924423_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
ENSMUSG00000021911.17_14	chr14	+	4081	18	NIC	ENSMUSG00000021911.17	novel	4413	18	NA	NA	-5	-5	combination_of_known_junctions	FALSE	canonical	1	20	junction_2	123.492375400293	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTCCCATGCCACTTA	NA	False	NA	10	True	AATAAA	-23	NA	31923922	32019172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_31924423_31930113_31930181_31930648_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
ENSMUSG00000021911.17_2	chr14	+	3783	18	NIC	ENSMUSG00000021911.17	novel	4413	18	NA	NA	-7	-5	combination_of_known_junctions	FALSE	canonical	1	134	junction_15	101.735663996062	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTCCCATGCCACTTA	NA	False	NA	10	True	AATAAA	-23	NA	31923920	32019172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_31924143_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
ENSMUSG00000021911.17_65	chr14	+	3110	16	ISM	ENSMUSG00000021911.17	ENSMUST00000022470.15	4413	18	7147	335	-5303	-5	3prime_fragment	FALSE	canonical	1	134	junction_13	83.8871199224821	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTCCCATGCCACTTA	1424	False	NA	10	True	AATAAA	-23	NA	31931052	32019172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
ENSMUSG00000021913.9_2	chr14	+	3720	24	FSM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	-4	7	-4	-7	multi-exon	TRUE	canonical	3	463	junction_11	40.4855688541514	1032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAAGCCCTGCTGGCCTCC	NA	False	NA	5	True	AATAAA	-11	NA	32043971	32070101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
ENSMUSG00000021913.9_3	chr14	+	3859	23	NIC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-4	-5	intron_retention	FALSE	canonical	3	463	junction_11	41.2351651260815	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCCCTGCTGGCCTCCTT	NA	False	NA	7	True	AATAAA	-13	NA	32043971	32070103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068811_32069462
ENSMUSG00000021916.17_13	chr14	+	1879	11	NIC	ENSMUSG00000021916.17	novel	2018	10	NA	NA	-17	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	49.4368283772331	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTATTTGCTTCCCCAT	3785	False	NA	6	True	AATAAA	-17	NA	30723615	30733945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_30723955_30726674_30726748_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
ENSMUSG00000021916.17_15	chr14	+	1659	10	NNC	ENSMUSG00000021916.17	novel	2018	10	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	35.7536150291732	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGACCTATTTGCTTCCC	3809	False	NA	3	True	AATAAA	-14	NA	30723639	30733942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_30723835_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
ENSMUSG00000021916.17_2	chr14	+	1492	10	FSM	ENSMUSG00000021916.17	ENSMUST00000168584.9	1498	10	1	5	1	-2	multi-exon	TRUE	canonical	3	45	junction_1	28.2055944017416	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGACCTATTTGCTTCCC	3527	False	NA	3	True	AATAAA	-14	NA	30723357	30733942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30723386_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
ENSMUSG00000021916.17_5	chr14	+	1593	11	NIC	ENSMUSG00000021916.17	novel	1498	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	48.6193377165917	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTATTTGCTTCCCCATTT	3527	False	NA	8	True	AATAAA	-19	NA	30723357	30733947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_30723386_30726651_30726748_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
ENSMUSG00000021916.17_8	chr14	+	1779	10	FSM	ENSMUSG00000021916.17	ENSMUST00000022476.9	2018	10	233	6	7	-2	multi-exon	FALSE	canonical	3	31	junction_1	32.2321823686655	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGACCTATTTGCTTCCC	3809	False	NA	3	True	AATAAA	-14	NA	30723639	30733942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30723955_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
ENSMUSG00000021917.17_0	chr14	-	701	4	FSM	ENSMUSG00000021917.17	ENSMUST00000228736.2	702	4	1	0	1	0	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	428	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATTTGTTTTCTTTTT	NA	False	NA	-5	True	AATAAA	-16	NA	30723319	30721783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
ENSMUSG00000021918.11_0	chr14	+	4127	15	FSM	ENSMUSG00000021918.11	ENSMUST00000228328.2	4245	15	87	31	6	-28	multi-exon	FALSE	canonical	3	18	junction_8	13.7241408043027	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACACAAGTAAATTTTCA	NA	False	NA	-4	True	NA	NA	NA	30673420	30710747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097_30681253_30685889_30686032_30692119_30692522_30696171_30696316_30697179_30697330_30697717_30697785_30699402_30699537_30701946_30702036_30704270_30704474_30706300_30706435_30709068
ENSMUSG00000021918.11_17	chr14	+	1800	2	ISM	ENSMUSG00000021918.11	ENSMUST00000226146.2	2132	13	27442	-1346	27442	-28	3prime_fragment	FALSE	canonical	3	38	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACACAAGTAAATTTTCA	NA	False	NA	-4	True	NA	NA	NA	30706313	30710747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_30706435_30709068
ENSMUSG00000021918.11_2	chr14	+	4010	14	FSM	ENSMUSG00000021918.11	ENSMUST00000226551.2	4098	14	86	2	5	-2	multi-exon	FALSE	canonical	3	11	junction_7	14.1684707054141	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATTTTGTGTGTATGGT	NA	False	NA	22	True	AGTAAA	-13	NA	30673419	30710773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097_30681253_30685889_30686032_30692119_30692522_30697179_30697330_30697717_30697785_30699402_30699537_30701946_30702036_30704270_30704474_30706300_30706435_30709068
ENSMUSG00000021918.11_6	chr14	+	1215	5	FSM	ENSMUSG00000021918.11	ENSMUST00000226833.2	1252	5	18	19	-3	-19	multi-exon	FALSE	canonical	3	44	junction_4	6.25999201277446	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTTCTGGGCTGGCG	NA	False	NA	NA	False	NA	NA	NA	30673452	30681516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097
ENSMUSG00000021918.11_8	chr14	+	2324	9	ISM	ENSMUSG00000021918.11	ENSMUST00000228328.2	4245	15	19146	349	13608	-346	3prime_fragment	FALSE	canonical	3	18	junction_2	11.1551557586616	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATATGTTTGGCCCAGGG	NA	False	NA	NA	False	AATAAA	-19	NA	30692479	30710429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_30692522_30696171_30696316_30697179_30697330_30697717_30697785_30699402_30699537_30701946_30702036_30704270_30704474_30706300_30706435_30709068
ENSMUSG00000021918.11_9	chr14	+	174	1	ISM	ENSMUSG00000021918.11	ENSMUST00000228392.2	6686	12	25251	10752	19747	-10579	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAATAGTTTCTTAATT	NA	False	NA	NA	False	NA	NA	NA	30698618	30698792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_30698600_30698800
ENSMUSG00000021928.10_1	chr14	-	832	4	FSM	ENSMUSG00000021928.10	ENSMUST00000022494.10	10092	4	7	9253	7	-1230	multi-exon	FALSE	canonical	3	296	junction_1	24.8506650928211	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTTGGGGTGTGACTTA	NA	False	NA	-9	True	ATTAAA	-14	NA	61597881	61578443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_61578854_61579536_61579676_61584820_61584891_61597668
ENSMUSG00000021929.10_0	chr14	-	4040	17	FSM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	20	9	20	-9	multi-exon	FALSE	canonical	2	379	junction_16	73.5790391347971	1319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATATGATAAAACATTGAA	6566	False	NA	-21	True	AATAAA	-13	NA	61677303	61602668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677171
ENSMUSG00000021929.10_7	chr14	-	4033	17	NNC	ENSMUSG00000021929.10	novel	4069	17	NA	NA	26	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	154.858188655783	100	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATATGATAAAACATTGAA	6572	False	NA	-21	True	AATAAA	-13	NA	61677297	61602668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608320_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677171
ENSMUSG00000021929.10_8	chr14	-	1828	1	ISM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	72827	9	6044	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATATGATAAAACATTGAA	5372	False	NA	-21	True	AATAAA	-13	NA	61604496	61602668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_61602700_61604500
ENSMUSG00000021930.15_3	chr14	-	1557	5	FSM	ENSMUSG00000021930.15	ENSMUST00000022497.15	4002	5	129	2316	1	-4	multi-exon	FALSE	canonical	3	133	junction_1	8.67467578644874	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAATATTCAGTATTATA	NA	False	NA	NA	False	AATAAA	-9	NA	61794206	61771757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_61772691_61777585_61777689_61783130_61783298_61787192_61787310_61793969
ENSMUSG00000021930.15_6	chr14	-	917	4	FSM	ENSMUSG00000021930.15	ENSMUST00000100496.5	1459	4	1	541	1	-541	multi-exon	FALSE	canonical	3	20	junction_1	60.8075287736277	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTAATTGAGTGATTATTT	NA	False	NA	-5	True	TATAAA	-44	NA	61794206	61772294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_61772691_61783130_61783298_61787192_61787310_61793969
ENSMUSG00000021932.14_0	chr14	+	1102	11	NIC	ENSMUSG00000021932.14	novel	362	5	NA	NA	-137	-486	combination_of_known_junctions	TRUE	canonical	2	10	junction_1	256.284704966957	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTTGCCTCTTGCCTA	NA	False	NA	10	True	AATAAA	-19	NA	62529900	62609955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_62530104_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000021932.14_10	chr14	+	4617	9	NIC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	-23	-492	intron_retention	FALSE	canonical	3	753	junction_1	49.7160688309122	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACAGAAACTTGCCTCT	NA	False	NA	4	True	AATAAA	-13	NA	62569550	62609949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_62569626_62584016_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000021932.14_5	chr14	+	978	11	FSM	ENSMUSG00000021932.14	ENSMUST00000022499.13	1494	11	26	490	26	-490	multi-exon	FALSE	canonical	3	538	junction_2	112.951139879153	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAAACTTGCCTCTTG	NA	False	NA	6	True	AATAAA	-15	NA	62569542	62609951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000021932.14_6	chr14	+	870	10	NIC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	26	-490	combination_of_known_splicesites	FALSE	canonical	3	239	junction_2	190.414168473765	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAAACTTGCCTCTTG	NA	False	NA	6	True	AATAAA	-15	NA	62569542	62609951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_62569626_62584016_62584092_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000021932.14_9	chr14	+	2783	10	ISM	ENSMUSG00000021932.14	ENSMUST00000022499.13	1494	11	26	492	26	-492	intron_retention	FALSE	canonical	3	538	junction_2	119.060623628324	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACAGAAACTTGCCTCT	NA	False	NA	4	True	AATAAA	-13	NA	62569542	62609949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920
ENSMUSG00000021936.15_0	chr14	-	3449	1	ISM	ENSMUSG00000021936.15	ENSMUST00000111945.9	5756	12	65806	6	7876	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAGTAAGAGTTCTTCA	8947	False	NA	-6	True	AATAAA	-15	NA	33103309	33099860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_33099900_33103300
ENSMUSG00000021938.13_7	chr14	-	2368	9	FSM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	1	1745	1	1531	multi-exon	FALSE	canonical	3	306	junction_8	29.8556422640679	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCTTAAAAAAAATGTTTG	NA	False	NA	-14	True	AATAAA	-8	NA	57015772	56959911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57009161_57009464_57015247
ENSMUSG00000021938.13_8	chr14	-	1670	8	ISM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	6482	1746	6093	1530	3prime_fragment	FALSE	canonical	3	316	junction_7	27.5518064891638	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATCTTAAAAAAAATGTTT	NA	False	NA	-15	True	AATAAA	-7	NA	57009291	56959912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57009161
ENSMUSG00000021938.13_9	chr14	-	696	1	ISM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	55172	1739	38723	1537	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATGTTTGAAAGTA	NA	False	NA	-8	True	AATAAA	-14	NA	56960601	56959905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_56959900_56960600
ENSMUSG00000021939.9_2	chr14	+	1900	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	54	2789	2	1271	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	8156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGGCAGGGTGCACGGT	NA	False	NA	25	True	AATAAA	-20	NA	63359964	63380583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
ENSMUSG00000021944.16_1	chr14	-	3407	7	FSM	ENSMUSG00000021944.16	ENSMUST00000067417.10	3400	7	-7	0	-7	0	multi-exon	FALSE	canonical	2	7	junction_5	3.90156663690654	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCGAAGTCTTTTCTAA	NA	False	NA	NA	False	AATAAA	-19	NA	63482727	63436370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_63438001_63438926_63439082_63440759_63440848_63441107_63441234_63442037_63442208_63477984_63479095_63482599
ENSMUSG00000021944.16_2	chr14	-	3407	7	FSM	ENSMUSG00000021944.16	ENSMUST00000118022.8	3374	7	-33	0	-10	0	multi-exon	FALSE	canonical	2	8	junction_5	3.67045259092421	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCGAAGTCTTTTCTAA	NA	False	NA	NA	False	AATAAA	-19	NA	63482730	63436370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_63438001_63438926_63439082_63440759_63440848_63441107_63441234_63442037_63442205_63477984_63479095_63482599
ENSMUSG00000021944.16_3	chr14	-	2697	6	ISM	ENSMUSG00000021944.16	ENSMUST00000118022.8	3374	7	4182	0	4182	0	3prime_fragment	FALSE	canonical	2	8	junction_5	3.97994974842648	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCGAAGTCTTTTCTAA	NA	False	NA	NA	False	AATAAA	-19	NA	63478515	63436370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_63438001_63438926_63439082_63440759_63440848_63441107_63441234_63442037_63442205_63477984
ENSMUSG00000021945.10_27	chr14	+	4753	25	NNC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	194	-6	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_1	35.7067531739057	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGGCTGGGTTTTTTGTTT	NA	False	NA	15	True	AATAAA	-11	NA	57124303	57197803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_57124414_57125251_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57183947_57184074_57185403_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
ENSMUSG00000021945.10_3	chr14	+	4943	25	NIC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	-66	182	combination_of_known_junctions	TRUE	canonical	2	100	junction_12	26.7082683306541	197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACTTGTGACTTTCTGC	NA	False	NA	21	True	ATTAAA	-15	NA	57124043	57197991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_57124156_57125251_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57183947_57184074_57185403_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
ENSMUSG00000021945.10_61	chr14	+	3300	2	ISM	ENSMUSG00000021945.10	ENSMUST00000224922.2	2829	18	36340	-1464	7551	-885	3prime_fragment	FALSE	canonical	3	199	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACCGTGTCTTGCTATT	NA	False	NA	NA	False	CATAAA	-20	NA	57194561	57199273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_57195760_57197171
ENSMUSG00000021945.10_62	chr14	+	2081	1	ISM	ENSMUSG00000021945.10	ENSMUST00000022511.10	6974	24	72453	349	10718	-349	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAAGACGCTCAGTCTTT	NA	False	NA	9	True	ATTAAA	-11	NA	57197728	57199809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_57197700_57199800
ENSMUSG00000021947.12_0	chr14	-	1426	8	FSM	ENSMUSG00000021947.12	ENSMUST00000022517.9	1497	8	29	42	-4	-42	multi-exon	TRUE	canonical	3	19	junction_7	4.40778532015472	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGGTGCTTATTCT	NA	False	NA	-5	True	AATAAA	-13	NA	57635957	57512491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_57513020_57513373_57513481_57523821_57523928_57541049_57541245_57550424_57550587_57600378_57600506_57620214_57620323_57635864
ENSMUSG00000021948.18_0	chr14	-	2764	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112210.11	2777	18	8	5	6	-1	multi-exon	FALSE	canonical	3	76	junction_17	15.936508975905	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCTGGCTGTGGGGAC	5429	False	NA	-8	True	AATAAA	-12	NA	30348159	30317315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
ENSMUSG00000021948.18_1	chr14	-	2275	15	FSM	ENSMUSG00000021948.18	ENSMUST00000112207.8	2139	15	97	-233	97	-1	multi-exon	TRUE	canonical	3	87	junction_13	15.3483363453968	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCTGGCTGTGGGGAC	520	False	NA	-8	True	AATAAA	-12	NA	30329682	30317315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564
ENSMUSG00000021948.18_20	chr14	-	2848	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112211.9	2851	18	0	3	0	-1	multi-exon	FALSE	canonical	3	7	junction_8	28.1631431086409	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCTGGCTGTGGGGAC	5423	False	NA	-8	True	AATAAA	-12	NA	30348165	30317315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324615_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
ENSMUSG00000021948.18_4	chr14	-	3016	17	NIC	ENSMUSG00000021948.18	novel	2777	18	NA	NA	0	-1	intron_retention	FALSE	canonical	3	76	junction_16	15.7806002341483	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCTGGCTGTGGGGAC	5423	False	NA	-8	True	AATAAA	-12	NA	30348165	30317315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
ENSMUSG00000021950.16_0	chr14	+	1868	12	FSM	ENSMUSG00000021950.16	ENSMUST00000022519.15	1880	12	7	5	7	-5	multi-exon	FALSE	canonical	2	6	junction_2	1.55345522642137	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTGTCTGTGGATTTG	NA	False	NA	NA	False	CATAAA	-14	NA	33807944	33822523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_33808034_33811467_33811559_33812563_33812659_33813757_33813872_33814486_33814578_33815334_33815415_33815840_33815901_33816354_33816449_33816679_33816776_33818486_33818546_33819813_33819937_33821647
ENSMUSG00000021951.8_0	chr14	-	830	5	FSM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	6	0	6	0	multi-exon	FALSE	canonical	3	133	junction_4	52.3115665986023	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGTCATGAGGTTGAG	NA	False	NA	-9	True	AATAAA	-19	NA	57809020	57787054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
ENSMUSG00000021951.8_1	chr14	-	811	4	ISM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	5484	-1	3844	0	3prime_fragment	FALSE	canonical	3	213	junction_3	22.6421435969889	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTCATGAGGTTGAGA	NA	False	NA	-8	True	AATAAA	-20	NA	57803542	57787053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378
ENSMUSG00000021952.17_0	chr14	-	2371	1	ISM	ENSMUSG00000021952.17	ENSMUST00000174545.9	8680	23	85528	11	68755	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATTACATTTTTGGT	8835	False	NA	-29	True	ACTAAA	-2	NA	57817359	57814988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_57815000_57817400
ENSMUSG00000021952.17_1	chr14	-	3490	23	FSM	ENSMUSG00000021952.17	ENSMUST00000174545.9	8680	23	460	4730	-3	20	multi-exon	FALSE	canonical	2	168	junction_17	47.2351467755642	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTAGATCCTTTCTGCAA	NA	False	NA	NA	False	AATAAA	-20	NA	57902427	57819707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855701_57866813_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57885875_57885982_57902344
ENSMUSG00000021952.17_30	chr14	-	2708	4	FSM	ENSMUSG00000021952.17	ENSMUST00000172539.8	707	4	-6	-1995	-3	1995	multi-exon	FALSE	canonical	3	7	junction_1	139.907906217705	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAATTTTCTAGTTCTTG	NA	False	NA	NA	False	AATAAA	-13	NA	57902427	57877240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_57879618_57880538_57880681_57885875_57885982_57902344
ENSMUSG00000021952.17_7	chr14	-	3846	24	NIC	ENSMUSG00000021952.17	novel	8680	23	NA	NA	64	20	combination_of_known_junctions	FALSE	canonical	2	67	junction_22	80.9376057852328	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTAGATCCTTTCTGCAA	NA	False	NA	NA	False	AATAAA	-20	NA	57902628	57819707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855701_57866813_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57880791_57880947_57885875_57885982_57902344
ENSMUSG00000021953.15_1	chr14	-	1463	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	308	110	-28	-110	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	2594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAGACTTATTCTCTTG	NA	False	NA	-11	True	ATTAAA	-18	NA	63746233	63729905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUSG00000021953.15_4	chr14	-	1439	8	ISM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	8827	4	-6	-4	3prime_fragment	FALSE	canonical	3	2964	junction_2	198.16711150348	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTTGCTTTTTACTTAG	NA	False	NA	-20	True	ATTAAA	-14	NA	63737714	63729799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569
ENSMUSG00000021953.15_6	chr14	-	1462	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-30	-112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1076.04849304063	220	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCTGAGACTTATTCTCT	NA	False	NA	-13	True	ATTAAA	-16	NA	63746235	63729907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737570_63737770_63746158
ENSMUSG00000021957.8_0	chr14	+	2066	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	48	1109	-2	-13	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	2646	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAATTAATCCTCAG	NA	False	NA	25	True	AATATA	-8	NA	30271135	30295568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
ENSMUSG00000021958.6_0	chr14	+	1318	7	FSM	ENSMUSG00000021958.6	ENSMUST00000022528.6	1295	7	-42	19	-42	-19	multi-exon	FALSE	canonical	3	56	junction_4	11.9443152447793	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATAGATTCTTTTTTAAG	4045	False	NA	NA	False	AATAAA	-20	NA	64097770	64157285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64156545
ENSMUSG00000021958.6_3	chr14	+	1243	6	NIC	ENSMUSG00000021958.6	novel	1295	7	NA	NA	-43	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	33.5440009539709	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTGAGCCTTTCACAT	4044	False	NA	NA	False	AATAAA	-37	NA	64097769	64157302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64115560_64115638_64156545
ENSMUSG00000021958.6_5	chr14	+	635	1	FSM	ENSMUSG00000021958.6	ENSMUST00000225564.2	1210	1	546	29	546	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACAAATAGATTCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	64156644	64157279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_64156600_64157300
ENSMUSG00000021959.17_0	chr14	-	5170	8	FSM	ENSMUSG00000021959.17	ENSMUST00000022531.14	5191	8	19	2	1	-2	multi-exon	FALSE	canonical	2	5	junction_5	7.14856914468389	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCTCTTCATTTGTGGTG	NA	False	NA	NA	False	ATTAAA	-12	NA	57983561	57927120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_57929228_57931770_57931878_57933576_57933760_57934372_57934956_57936714_57938016_57940378_57940512_57971334_57971876_57983346
ENSMUSG00000021959.17_1	chr14	-	4074	5	ISM	ENSMUSG00000021959.17	ENSMUST00000022531.14	5191	8	45773	1	-460	-1	3prime_fragment	FALSE	canonical	2	7	junction_4	6.41774882649672	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTTCATTTGTGGTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	57937807	57927119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_57929228_57931770_57931878_57933576_57933760_57934372_57934956_57936714
ENSMUSG00000021962.10_0	chr14	+	5523	10	FSM	ENSMUSG00000021962.10	ENSMUST00000022535.9	5576	10	45	8	-20	-1	multi-exon	FALSE	canonical	3	125	junction_5	16.6332999331662	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAAAATTCTAATTGTGT	NA	False	NA	NA	False	AATAAA	-26	NA	30201613	30249012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30234940_30235055_30240875_30241635_30243546_30243613_30244684_30244904_30245182
ENSMUSG00000021962.10_1	chr14	+	5409	9	NIC	ENSMUSG00000021962.10	novel	5576	10	NA	NA	-20	-1	intron_retention	FALSE	canonical	3	24	junction_5	46.725093632865	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAAAATTCTAATTGTGT	NA	False	NA	NA	False	AATAAA	-26	NA	30201613	30249012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30240875_30241635_30243546_30243613_30244684_30244904_30245182
ENSMUSG00000021962.10_24	chr14	+	4448	4	ISM	ENSMUSG00000021962.10	ENSMUST00000223754.2	1841	5	6076	-3315	-4133	-5	3prime_fragment	FALSE	canonical	3	136	junction_2	8.25967446224258	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTACTAAAAATTCTAATT	NA	False	NA	NA	False	AATAAA	-22	NA	30241297	30249008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_30241635_30243546_30243613_30244684_30244904_30245182
ENSMUSG00000021962.10_27	chr14	+	2440	1	NIC	ENSMUSG00000021962.10	novel	3194	11	NA	NA	909	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAAAATTCTAATTGTGT	NA	False	NA	NA	False	AATAAA	-26	NA	30246572	30249012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_30246600_30249000
ENSMUSG00000021963.18_0	chr14	+	705	4	FSM	ENSMUSG00000021963.18	ENSMUST00000128764.9	5125	4	38	4382	0	-71	multi-exon	FALSE	canonical	3	2836	junction_1	125.222468697381	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTATGTAAAATATGAAGAAA	NA	False	NA	-75	True	ATTAAA	-20	NA	58035674	58039713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378
ENSMUSG00000021963.18_1	chr14	+	3497	3	NIC	ENSMUSG00000021963.18	novel	5125	4	NA	NA	0	5	intron_retention	FALSE	canonical	3	2836	junction_1	140.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGCCATTAAGCCTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	58035674	58039609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_58035812_58035944_58039074_58039378
ENSMUSG00000021965.4_0	chr14	-	2263	9	FSM	ENSMUSG00000021965.4	ENSMUST00000022536.3	2260	9	-4	1	-4	-1	multi-exon	FALSE	canonical	3	155	junction_3	28.547110186497	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTTTATGTTGCCAACT	NA	False	NA	-8	True	AATAAA	-18	NA	58063624	58044018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_58044989_58045431_58045536_58047399_58047601_58049036_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
ENSMUSG00000021965.4_11	chr14	-	3492	2	ISM	ENSMUSG00000021965.4	ENSMUST00000224108.2	518	3	-201	-909	-201	0	intron_retention	FALSE	canonical	3	253	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTTATGTTGCCAACTC	NA	False	NA	-7	True	AATAAA	-19	NA	58047952	58044017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_58044989_58045431
ENSMUSG00000021967.5_0	chr14	+	517	2	FSM	ENSMUSG00000021967.5	ENSMUST00000022538.5	2877	2	12	2348	12	0	multi-exon	FALSE	canonical	3	956	junction_1	0	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTGTCTCATACGGAA	NA	False	NA	25	True	ATTAAA	-17	NA	58063702	58064405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_58063780_58063965
ENSMUSG00000021967.5_1	chr14	+	508	2	NNC	ENSMUSG00000021967.5	novel	2877	2	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	155	junction_1	0	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTGTCTCATACGGAA	NA	False	NA	25	True	ATTAAA	-17	NA	58063702	58064405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_58063771_58063965
ENSMUSG00000021967.5_2	chr14	+	682	1	FSM	ENSMUSG00000021967.5	ENSMUST00000224313.2	519	1	-163	0	33	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTGTCTCATACGGAA	NA	False	NA	25	True	ATTAAA	-17	NA	58063723	58064405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_58063700_58064400
ENSMUSG00000021969.9_1	chr14	-	2501	1	ISM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	55000	73	3885	-73	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCTTGTTTTTTAATGG	NA	False	NA	-15	True	AATAAA	-12	NA	58072733	58070232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_58070200_58072700
ENSMUSG00000021969.9_2	chr14	-	2830	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	2	2354	2	635	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	58127731	58072513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ENSMUSG00000021969.9_3	chr14	-	6735	12	NIC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-5	-79	intron_retention	FALSE	canonical	3	200	junction_2	22.070510597096	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATATTGTCTTGTTTTT	NA	False	NA	-21	True	AATAAA	-6	NA	58127738	58070238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_58074104_58075047_58075125_58076546_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ENSMUSG00000021969.9_4	chr14	-	2746	12	NIC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	9	635	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	61.0282416672129	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	58127724	58072513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_58074104_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ENSMUSG00000021972.15_1	chr14	-	3398	11	FSM	ENSMUSG00000021972.15	ENSMUST00000022544.14	3396	11	-6	4	0	-4	multi-exon	FALSE	canonical	3	23	junction_3	9.87167665596883	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAAGGCTGTCCGGGAT	7679	False	NA	NA	False	AATAAA	-10	NA	65187305	65049052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_65050869_65054465_65054586_65063049_65063145_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
ENSMUSG00000021972.15_3	chr14	-	2289	1	NIC	ENSMUSG00000021972.15	novel	3396	11	NA	NA	8404	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAAGGCTGTCCGGGAT	NA	False	NA	NA	False	AATAAA	-10	NA	65051341	65049052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_65049100_65051300
ENSMUSG00000021972.15_5	chr14	-	3389	11	NIC	ENSMUSG00000021972.15	novel	3396	11	NA	NA	1	-9	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	11.4873843846195	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTGAGCAAGGCTGTCC	7680	False	NA	NA	False	AATAAA	-5	NA	65187304	65049057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_65050869_65054465_65054586_65063049_65063142_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
ENSMUSG00000021973.10_0	chr14	-	2298	12	FSM	ENSMUSG00000021973.10	ENSMUST00000022543.10	2329	12	11	20	11	-20	multi-exon	FALSE	canonical	3	153	junction_3	66.5872943480589	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGGGTGATATTGCTA	NA	False	NA	-21	True	NA	NA	NA	58236708	58153737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_58154833_58156279_58156438_58156800_58156910_58161396_58161569_58164653_58164752_58169694_58169761_58181044_58181128_58182841_58182890_58191592_58191669_58192455_58192488_58209107_58209247_58236486
ENSMUSG00000021973.10_10	chr14	-	908	9	ISM	ENSMUSG00000021973.10	ENSMUST00000022543.10	2329	12	8	7710	8	-25	5prime_fragment	FALSE	canonical	3	228	junction_1	35.692261065951	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGTGAGAGAAAAGTTGT	NA	False	NA	-9	True	AATAAA	-15	NA	58236711	58161427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_58161569_58164653_58164752_58169694_58169761_58181044_58181128_58182841_58182890_58191592_58191669_58192455_58192488_58209107_58209247_58236486
ENSMUSG00000021975.10_0	chr14	+	2401	17	FSM	ENSMUSG00000021975.10	ENSMUST00000043914.8	2674	17	268	5	0	-5	multi-exon	FALSE	canonical	3	162	junction_12	28.2795752266543	327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTGCCCAGTTCTATT	NA	False	NA	12	True	AATAAA	-12	NA	65187761	65277276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
ENSMUSG00000021978.10_1	chr14	-	5938	7	NIC	ENSMUSG00000021978.10	novel	5977	7	NA	NA	-34	-6	combination_of_known_junctions	FALSE	canonical	3	28	junction_6	49.9355139710763	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCATGCAGTTTGGAGGT	NA	False	NA	-9	True	NA	NA	NA	65387338	65289517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313032_65315639_65317828_65317925_65387258
ENSMUSG00000021978.10_10	chr14	-	1924	1	ISM	ENSMUSG00000021978.10	ENSMUST00000022550.8	5977	7	44114	9	44113	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCATGCAGTTTGGAGGT	7926	False	NA	-9	True	NA	NA	NA	65291441	65289517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_65289500_65291400
ENSMUSG00000021978.10_11	chr14	-	5841	6	NIC	ENSMUSG00000021978.10	novel	5977	7	NA	NA	30	-6	combination_of_known_splicesites	FALSE	canonical	3	35	junction_5	51.808879547815	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCATGCAGTTTGGAGGT	NA	False	NA	-9	True	NA	NA	NA	65335524	65289517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313032_65315639_65335445
ENSMUSG00000021978.10_4	chr14	-	3974	5	ISM	ENSMUSG00000021978.10	ENSMUST00000225633.2	6013	7	21704	6	21704	-6	3prime_fragment	FALSE	canonical	3	155	junction_1	9.54921462739214	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCATGCAGTTTGGAGGT	NA	False	NA	-9	True	NA	NA	NA	65313850	65289517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313032
ENSMUSG00000021978.10_5	chr14	-	5949	7	FSM	ENSMUSG00000021978.10	ENSMUST00000022550.8	5977	7	19	9	18	-6	multi-exon	FALSE	canonical	3	124	junction_6	16.5797734872612	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCATGCAGTTTGGAGGT	NA	False	NA	-9	True	NA	NA	NA	65335536	65289517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313032_65315639_65317828_65317925_65335445
ENSMUSG00000021981.11_0	chr14	+	3033	11	FSM	ENSMUSG00000021981.11	ENSMUST00000022553.6	3037	11	0	4	0	-4	multi-exon	FALSE	canonical	3	224	junction_1	43.2892596379287	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTTTTGGTCTCATTC	NA	False	NA	1	True	AATAAA	-8	NA	59678429	59786348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
ENSMUSG00000021981.11_17	chr14	+	2992	10	ISM	ENSMUSG00000021981.11	ENSMUST00000022553.6	3037	11	18116	4	-41	-4	3prime_fragment	FALSE	canonical	3	235	junction_8	36.7967389859482	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTTTTGGTCTCATTC	NA	False	NA	1	True	AATAAA	-8	NA	59696545	59786348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
ENSMUSG00000021981.11_2	chr14	+	3034	11	NIC	ENSMUSG00000021981.11	novel	3037	11	NA	NA	0	-7	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	93.0002150535148	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACATACTTTTGGTCTCA	NA	False	NA	-2	True	AATAAA	-5	NA	59678429	59786345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_59678472_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
ENSMUSG00000021982.15_0	chr14	-	2228	10	FSM	ENSMUSG00000021982.15	ENSMUST00000056997.15	2202	10	2	-28	2	28	multi-exon	FALSE	canonical	3	30	junction_1	34.1362556619393	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATGTGGTGTTGTTGTTG	NA	False	NA	-4	True	NA	NA	NA	59835391	59801396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_59802045_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ENSMUSG00000021982.15_10	chr14	-	2802	9	ISM	ENSMUSG00000021982.15	ENSMUST00000056997.15	2202	10	-6	3758	-4	-5	5prime_fragment	FALSE	canonical	3	45	junction_4	30.7954440623934	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGGAACAGCTTCATAGT	NA	False	NA	NA	False	AATAAA	-24	NA	59835399	59805182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ENSMUSG00000021982.15_15	chr14	-	1883	10	FSM	ENSMUSG00000021982.15	ENSMUST00000171683.3	1892	10	2	7	2	-7	multi-exon	FALSE	canonical	3	10	junction_1	37.821543276319	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATGGAACAGCTTCATA	NA	False	NA	NA	False	AATAAA	-22	NA	59835391	59805184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_59805488_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ENSMUSG00000021982.15_20	chr14	-	1373	5	FSM	ENSMUSG00000021982.15	ENSMUST00000225103.2	2579	5	4	1202	2	-1202	multi-exon	FALSE	canonical	3	110	junction_3	7.29297607290741	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACACAAAAAGAAAACTAAAT	NA	False	NA	NA	False	AGTAAA	-5	NA	59835391	59823223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ENSMUSG00000021982.15_3	chr14	-	596	1	NIC	ENSMUSG00000021982.15	novel	3189	11	NA	NA	33294	29	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTGGTGTTGTTGTTGT	NA	False	NA	-3	True	NA	NA	NA	59801991	59801395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_59801400_59802000
ENSMUSG00000021987.10_0	chr14	+	3806	14	FSM	ENSMUSG00000021987.10	ENSMUST00000022563.9	3813	14	3	4	3	-4	multi-exon	FALSE	canonical	3	64	junction_3	13.0256915000032	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTACTTTGAGTGTTTTTC	NA	False	NA	5	True	ATTAAA	-9	NA	60502679	60539815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_60502811_60514577_60514695_60517531_60517695_60519385_60519544_60522365_60522495_60526991_60527127_60529442_60529576_60530366_60530477_60530832_60530959_60533568_60533619_60534022_60534224_60535511_60535644_60536363_60536491_60537721
ENSMUSG00000021987.10_14	chr14	+	1747	1	ISM	ENSMUSG00000021987.10	ENSMUST00000022563.9	3813	14	35393	3	4366	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTTTGAGTGTTTTTCT	NA	False	NA	6	True	ATTAAA	-10	NA	60538069	60539816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_60538100_60539800
ENSMUSG00000021990.17_0	chr14	+	7518	13	NIC	ENSMUSG00000021990.17	novel	7517	13	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	3.66192875711997	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGGTTCTAGTGATGCA	NA	False	NA	4	True	ATTAAA	-12	NA	60872139	61001998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_60872314_60928302_60929998_60944162_60944499_60946873_60947019_60983093_60983231_60984162_60984343_60984889_60985076_60987411_60987592_60989083_60989317_60991229_60991360_60993660_60994034_60997031_60997107_60998324
ENSMUSG00000021990.17_1	chr14	+	7518	13	FSM	ENSMUSG00000021990.17	ENSMUST00000022566.14	7517	13	-10	9	-10	-2	multi-exon	FALSE	canonical	2	7	junction_3	4.19242040936842	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGCTGGTTCTAGTGATG	NA	False	NA	2	True	ATTAAA	-10	NA	60872167	61001996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_60872314_60928302_60929998_60944162_60944529_60946873_60947019_60983093_60983231_60984162_60984343_60984889_60985076_60987411_60987592_60989083_60989317_60991229_60991360_60993660_60994034_60997031_60997107_60998324
ENSMUSG00000021990.17_12	chr14	+	3490	1	ISM	ENSMUSG00000021990.17	ENSMUST00000160973.8	7467	13	126817	0	9983	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGGTTCTAGTGATGCA	NA	False	NA	4	True	ATTAAA	-12	NA	60998508	61001998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_60998500_61002000
ENSMUSG00000021990.17_13	chr14	+	7806	14	NIC	ENSMUSG00000021990.17	novel	7517	13	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	5.61064077809553	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGGTTCTAGTGATGCA	NA	False	NA	4	True	ATTAAA	-12	NA	60872130	61001998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_60872314_60873816_60874096_60928302_60929998_60944162_60944499_60946873_60947019_60983093_60983231_60984162_60984343_60984889_60985076_60987411_60987592_60989083_60989317_60991229_60991360_60993660_60994034_60997031_60997107_60998324
ENSMUSG00000021990.17_17	chr14	+	4836	7	ISM	ENSMUSG00000021990.17	ENSMUST00000162945.2	5469	10	14550	0	-3621	0	3prime_fragment	FALSE	canonical	3	13	junction_6	2.60874597374975	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGGTTCTAGTGATGCA	NA	False	NA	4	True	ATTAAA	-12	NA	60984904	61001998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_60985076_60987411_60987592_60989083_60989317_60991229_60991360_60993660_60994034_60997031_60997107_60998324
ENSMUSG00000021990.17_7	chr14	+	5813	12	NIC	ENSMUSG00000021990.17	novel	1208	7	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	3.46648653907957	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTGGTTCTAGTGATGC	NA	False	NA	3	True	ATTAAA	-11	NA	60940406	61001997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_60940572_60944162_60944499_60946873_60947019_60983093_60983231_60984162_60984343_60984889_60985076_60987411_60987592_60989083_60989317_60991229_60991360_60993660_60994034_60997031_60997107_60998324
ENSMUSG00000021990.17_8	chr14	+	5842	12	NIC	ENSMUSG00000021990.17	novel	1208	7	NA	NA	5	-2	combination_of_known_junctions	FALSE	canonical	3	7	junction_2	4.14010819517662	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGCTGGTTCTAGTGATG	NA	False	NA	2	True	ATTAAA	-10	NA	60940406	61001996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_60940572_60944162_60944529_60946873_60947019_60983093_60983231_60984162_60984343_60984889_60985076_60987411_60987592_60989083_60989317_60991229_60991360_60993660_60994034_60997031_60997107_60998324
ENSMUSG00000021993.11_0	chr14	+	2361	19	FSM	ENSMUSG00000021993.11	ENSMUST00000063562.9	3015	19	31	623	19	-623	multi-exon	FALSE	canonical	3	187	junction_10	24.3726850752595	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTACACCGTGTCTCACCT	NA	False	NA	NA	False	AATAAA	-13	NA	61022052	61141055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_61022320_61024743_61024918_61025602_61025692_61028335_61028423_61033620_61033685_61039569_61039753_61040261_61040419_61046416_61046466_61048547_61048609_61052401_61052455_61064747_61064902_61066835_61066914_61068561_61068767_61071433_61071544_61080656_61080732_61083832_61083953_61109466_61109589_61112682_61112757_61140816
ENSMUSG00000021993.11_1	chr14	+	2458	10	ISM	ENSMUSG00000021993.11	ENSMUST00000223709.2	2821	17	-63	48488	2	17133	5prime_fragment	FALSE	canonical	3	207	junction_1	12.2836838484589	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATAATGTAAGTAGC	NA	False	NA	NA	False	AATAAA	-4	NA	61022023	61053699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_61022320_61024743_61024918_61025602_61025692_61028335_61028423_61033620_61033685_61039569_61039753_61040261_61040419_61046416_61046466_61048547_61048609_61052401
ENSMUSG00000021996.17_1	chr14	+	1041	9	FSM	ENSMUSG00000021996.17	ENSMUST00000022573.17	1988	9	30	917	6	0	multi-exon	FALSE	canonical	3	1089	junction_1	102.16133074701	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969766	74987288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
ENSMUSG00000021996.17_11	chr14	+	981	8	ISM	ENSMUSG00000021996.17	ENSMUST00000176957.8	1117	9	3574	0	-9	0	3prime_fragment	FALSE	canonical	3	1233	junction_7	72.2252711723422	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74973397	74987288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
ENSMUSG00000021996.17_2	chr14	+	1052	9	NIC	ENSMUSG00000021996.17	novel	1988	9	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	441.393514196799	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTTTAAATTGTTATTT	NA	False	NA	12	True	AATAAA	-13	NA	74969758	74987287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983162_74987084
ENSMUSG00000021996.17_9	chr14	+	1123	9	FSM	ENSMUSG00000021996.17	ENSMUST00000176957.8	1117	9	-6	0	-6	0	multi-exon	FALSE	canonical	3	49	junction_1	425.971756692859	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969817	74987288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_74969962_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
ENSMUSG00000021998.17_1	chr14	+	3584	17	NIC	ENSMUSG00000021998.17	novel	692	3	NA	NA	412	-15	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	6.34921254960015	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCTTTCCGAATAA	NA	False	NA	NA	False	AATAAA	-8	NA	75414059	75468241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_75414155_75414254_75414374_75435516_75435604_75436719_75436884_75437819_75437950_75440075_75440209_75442004_75442087_75443558_75443725_75445859_75446003_75447878_75447975_75449770_75449967_75451924_75452004_75452548_75452664_75453767_75453902_75461510_75461635_75464406_75464532_75466645
ENSMUSG00000021998.17_2	chr14	+	3476	16	ISM	ENSMUSG00000021998.17	ENSMUST00000145303.8	3841	17	40532	5	656	-5	3prime_fragment	FALSE	canonical	2	7	junction_1	5.24679796532027	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTATTTCTGCATATGCTT	NA	False	NA	NA	False	AATAAA	-44	NA	75414303	75468277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_75414374_75435516_75435604_75436719_75436884_75437819_75437950_75440075_75440209_75442004_75442087_75443558_75443725_75445859_75446003_75447878_75447975_75449770_75449967_75451924_75452004_75452548_75452664_75453767_75453902_75461510_75461635_75464406_75464532_75466645
ENSMUSG00000021998.17_3	chr14	+	3497	15	ISM	ENSMUSG00000021998.17	ENSMUST00000131802.2	3594	16	7636	0	65	0	3prime_fragment	FALSE	canonical	2	7	junction_11	4.86396579606663	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATGTCCCCCAATTC	NA	False	NA	NA	False	AATAAA	-23	NA	75435404	75468256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_75435604_75436719_75436884_75437819_75437950_75440075_75440209_75442004_75442087_75443558_75443725_75445859_75446003_75447878_75447975_75449770_75449967_75451924_75452004_75452548_75452664_75453767_75453902_75461510_75461635_75464406_75464532_75466645
ENSMUSG00000022000.12_0	chr14	+	6155	19	FSM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	-11	0	-2	0	multi-exon	FALSE	canonical	3	74	junction_1	25.8044043517888	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75521814	75581866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573361_75573515_75574809_75575011_75576748_75576913_75581033
ENSMUSG00000022000.12_1	chr14	+	6158	19	NIC	ENSMUSG00000022000.12	novel	6151	19	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_1	26.5676402070797	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75521808	75581866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573364_75573515_75574809_75575011_75576748_75576913_75581033
ENSMUSG00000022000.12_3	chr14	+	6151	19	NIC	ENSMUSG00000022000.12	novel	6151	19	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	32.4925442540095	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75521815	75581866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_75522106_75529011_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573361_75573515_75574809_75575011_75576748_75576913_75581033
ENSMUSG00000022000.12_51	chr14	+	4241	10	ISM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	39199	1	-14487	-1	3prime_fragment	FALSE	canonical	3	83	junction_6	25.0687942359509	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTTGTAGATTTTCCT	NA	False	NA	13	True	AATAAA	-14	NA	75561024	75581865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573361_75573515_75574809_75575011_75576748_75576913_75581033
ENSMUSG00000022000.12_54	chr14	+	3491	8	ISM	ENSMUSG00000022000.12	ENSMUST00000022577.6	6151	19	43437	0	-10262	0	3prime_fragment	FALSE	canonical	3	74	junction_4	27.7995742149158	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75565249	75581866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573364_75573515_75574809_75575011_75576748_75576913_75581033
ENSMUSG00000022000.12_56	chr14	+	3534	8	ISM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	43384	0	-10302	0	3prime_fragment	FALSE	canonical	3	83	junction_4	24.9440189551053	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75565209	75581866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573361_75573515_75574809_75575011_75576748_75576913_75581033
ENSMUSG00000022000.12_6	chr14	+	6177	19	FSM	ENSMUSG00000022000.12	ENSMUST00000022577.6	6151	19	-26	0	-26	0	multi-exon	FALSE	canonical	3	23	junction_1	33.0591034510565	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75521786	75581866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_75522106_75529011_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573364_75573515_75574809_75575011_75576748_75576913_75581033
ENSMUSG00000022000.12_63	chr14	+	2694	6	ISM	ENSMUSG00000022000.12	ENSMUST00000022577.6	6151	19	46054	0	-7645	0	3prime_fragment	FALSE	canonical	3	74	junction_2	30.4538995860957	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75567866	75581866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_75568700_75569145_75569659_75573364_75573515_75574809_75575011_75576748_75576913_75581033
ENSMUSG00000022000.12_64	chr14	+	2685	6	ISM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	46053	0	-7633	0	3prime_fragment	FALSE	canonical	3	83	junction_2	27.0747114481392	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75567878	75581866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_75568700_75569145_75569659_75573361_75573515_75574809_75575011_75576748_75576913_75581033
ENSMUSG00000022000.12_65	chr14	+	1583	5	ISM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	47600	1	-6086	-1	3prime_fragment	FALSE	canonical	3	83	junction_1	30.2107182966576	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTTGTAGATTTTCCT	NA	False	NA	13	True	AATAAA	-14	NA	75569425	75581865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_75569659_75573361_75573515_75574809_75575011_75576748_75576913_75581033
ENSMUSG00000022003.8_0	chr14	-	1855	1	ISM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	25065	1	10356	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATATGGCTTACAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	75999412	75997557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_75997600_75999400
ENSMUSG00000022003.8_1	chr14	-	3552	10	FSM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	32	4	0	-4	multi-exon	FALSE	canonical	3	23	junction_9	8.56348838577675	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATAATATGGCTTACAGT	NA	False	NA	NA	False	AATAAA	-13	NA	76024445	75997560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76014435_76014567_76024364
ENSMUSG00000022003.8_2	chr14	-	2761	3	ISM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	20023	6	5314	-6	3prime_fragment	FALSE	canonical	3	43	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGATAATATGGCTTACA	6443	False	NA	NA	False	AATAAA	-11	NA	76004454	75997562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_76000131_76000768_76000850_76004342
ENSMUSG00000022003.8_3	chr14	-	2896	4	ISM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	18120	0	3411	0	3prime_fragment	FALSE	canonical	3	40	junction_3	2.86744175568088	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATGGCTTACAGTCATT	4540	False	NA	NA	False	AATAAA	-17	NA	76006357	75997556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255
ENSMUSG00000022003.8_6	chr14	-	3369	9	ISM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	10016	1	-4693	-1	3prime_fragment	FALSE	canonical	3	26	junction_8	7.22841614740048	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATATGGCTTACAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	76014461	75997557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76014435
ENSMUSG00000022003.8_8	chr14	-	2608	2	ISM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	23672	3	8963	-3	3prime_fragment	FALSE	canonical	3	43	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATATGGCTTACAGTC	9819	False	NA	NA	False	AATAAA	-14	NA	76000805	75997559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_76000131_76000768
ENSMUSG00000022003.8_9	chr14	-	3340	8	ISM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	11895	4	-2814	-4	3prime_fragment	FALSE	canonical	3	30	junction_4	5.473498303048	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATAATATGGCTTACAGT	NA	False	NA	NA	False	AATAAA	-13	NA	76012582	75997560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434
ENSMUSG00000022008.5_0	chr14	-	5426	8	FSM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	-41	4	-41	-4	multi-exon	FALSE	canonical	3	101	junction_3	16.688013540214	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGAAGTTGGAATCTTC	NA	False	NA	-13	True	AATAAA	-13	NA	76348241	76323679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_76328187_76332446_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
ENSMUSG00000022008.5_2	chr14	-	2686	1	ISM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	21839	0	21839	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTTGGAATCTTCCTTT	NA	False	NA	-9	True	AATAAA	-17	NA	76326361	76323675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_76323700_76326400
ENSMUSG00000022009.2_0	chr14	+	1660	10	FSM	ENSMUSG00000022009.2	ENSMUST00000022586.2	3974	10	20	2294	20	-2294	multi-exon	FALSE	canonical	3	441	junction_7	36.4295362461713	481	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATAGTGTGTCTGTGTCA	NA	False	NA	23	True	AATAAA	-19	NA	76348350	76372525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_76348767_76349363_76349438_76351614_76351714_76352417_76352481_76353223_76353301_76361925_76362019_76363577_76363772_76368252_76368370_76370411_76370639_76372225
ENSMUSG00000022010.20_32	chr14	+	1718	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	38	6	-14	-3	multi-exon	FALSE	canonical	3	2255	junction_1	40	2623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	6577	False	NA	25	True	AATAAA	-15	NA	76741955	76745199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_76742282_76742688_76742738_76743856
ENSMUSG00000022010.20_33	chr14	+	1035	1	ISM	ENSMUSG00000022010.20	ENSMUST00000110888.8	4999	5	91764	3	1627	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	8786	False	NA	25	True	AATAAA	-15	NA	76744164	76745199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_76744200_76745200
ENSMUSG00000022013.5_0	chr14	-	615	6	FSM	ENSMUSG00000022013.5	ENSMUST00000226459.2	6193	6	12	5566	12	-32	multi-exon	FALSE	canonical	3	520	junction_3	59.8618409339372	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTGGTCTGGCAGGGAC	NA	False	NA	-39	True	AATAAA	-17	NA	78112354	78063686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78094378_78094431_78112237
ENSMUSG00000022016.18_0	chr14	-	6665	12	FSM	ENSMUSG00000022016.18	ENSMUST00000123853.9	9364	12	-14	2713	-14	-134	multi-exon	FALSE	canonical	3	18	junction_4	17.0725239604508	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAGAATTTTGTCTTTTT	NA	False	NA	-6	True	AATAAA	-18	NA	78774262	78732398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_78733387_78736274_78736436_78739629_78739677_78740378_78740463_78745164_78745321_78747319_78751761_78752246_78752512_78753762_78753898_78755612_78755661_78756219_78756337_78760030_78760143_78774151
ENSMUSG00000022016.18_1	chr14	-	6687	12	NNC	ENSMUSG00000022016.18	novel	9364	12	NA	NA	-30	-131	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_4	12.2271882389781	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATTTTGTCTTTTTTAT	NA	False	NA	-3	True	AATAAA	-21	NA	78774278	78732395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_78733387_78736274_78736436_78739629_78739677_78740378_78740466_78745164_78745321_78747319_78751761_78752246_78752512_78753762_78753898_78755612_78755661_78756219_78756337_78760030_78760143_78774151
ENSMUSG00000022016.18_11	chr14	-	5431	6	FSM	ENSMUSG00000022016.18	ENSMUST00000227722.2	760	6	-1182	-3489	-1050	-13	multi-exon	FALSE	canonical	3	18	junction_4	17.6476627347646	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAATGTCAAGCCATGG	NA	False	NA	NA	False	AATAAA	-4	NA	78748614	78729698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_78733387_78736274_78736436_78739629_78739677_78740378_78740463_78745164_78745321_78747319
ENSMUSG00000022016.18_2	chr14	-	2401	1	ISM	ENSMUSG00000022016.18	ENSMUST00000123853.9	9364	12	42160	2	9323	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCATGGTTTTCCTTCTT	702	False	NA	NA	False	AATAAA	-15	NA	78732088	78729687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_78729700_78732100
ENSMUSG00000022016.18_3	chr14	-	6248	6	NNC	ENSMUSG00000022016.18	novel	760	6	NA	NA	-1868	-17	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_4	9.98799279134702	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAAGAAATGTCAAGCC	NA	False	NA	NA	False	NA	NA	NA	78749432	78729702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_78733387_78736274_78736436_78739629_78739677_78740378_78740466_78745164_78745321_78747319
ENSMUSG00000022016.18_5	chr14	-	2661	5	FSM	ENSMUSG00000022016.18	ENSMUST00000226416.2	682	5	-1061	-918	-1061	-131	multi-exon	FALSE	canonical	2	4	junction_3	25.3512820188644	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATTTTGTCTTTTTTAT	NA	False	NA	-3	True	AATAAA	-21	NA	78748625	78732395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_78733387_78736274_78736436_78739629_78739677_78745164_78745321_78747319
ENSMUSG00000022016.18_7	chr14	-	9290	11	NIC	ENSMUSG00000022016.18	novel	9364	12	NA	NA	-14	-4	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	21.5566695015719	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGCCATGGTTTTCCTTC	NA	False	NA	NA	False	AATAAA	-13	NA	78774262	78729689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_78733387_78736274_78736436_78739629_78739677_78745164_78745321_78747319_78751761_78752246_78752512_78753762_78753898_78755612_78755661_78756219_78756337_78760030_78760143_78774151
ENSMUSG00000022018.8_0	chr14	-	904	5	FSM	ENSMUSG00000022018.8	ENSMUST00000022595.8	918	5	13	1	13	-1	multi-exon	FALSE	canonical	3	129	junction_2	11.7046999107196	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTACTTTGAAAGCTGC	NA	False	NA	-12	True	AATAAA	-13	NA	79539072	79526196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_79526560_79527683_79527747_79529110_79529219_79538154_79538341_79538888
ENSMUSG00000022019.17_0	chr14	+	5289	12	FSM	ENSMUSG00000022019.17	ENSMUST00000169504.8	5280	12	-16	7	-16	-7	multi-exon	FALSE	canonical	3	80	junction_9	9.05812269605902	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGAACTTTTGTTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	87654058	87752195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724597_87724724_87743194_87744043_87749080
ENSMUSG00000022019.17_1	chr14	+	2668	14	FSM	ENSMUSG00000022019.17	ENSMUST00000168275.9	2657	14	-16	5	-16	-3	multi-exon	FALSE	canonical	3	57	junction_12	16.6232175269033	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGTTGCTCTGGTTCAC	NA	False	NA	2	True	AATAAA	-16	NA	87654058	87782935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724597_87724724_87743194_87744043_87749080_87749207_87776832_87776958_87782692
ENSMUSG00000022019.17_18	chr14	+	3542	2	ISM	ENSMUSG00000022019.17	ENSMUST00000169504.8	5280	12	89330	218	-33130	-218	3prime_fragment	FALSE	canonical	3	97	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTAAGTGTTAATGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	87743404	87751984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_87744043_87749080
ENSMUSG00000022019.17_22	chr14	+	2634	2	FSM	ENSMUSG00000022019.17	ENSMUST00000227304.2	669	2	-1965	0	-1965	0	multi-exon	FALSE	canonical	3	58	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGCTCTGGTTCACTTG	NA	False	NA	5	True	AATAAA	-19	NA	87774569	87782938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_87776958_87782692
ENSMUSG00000022020.16_1	chr14	-	2816	20	FSM	ENSMUSG00000022020.16	ENSMUST00000022597.15	13223	20	42	10365	42	2	multi-exon	FALSE	canonical	3	151	junction_14	26.2237337258888	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGGGTTTTTTGTTTGTTT	NA	False	NA	-8	True	AATAAA	-13	NA	79628176	79573073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
ENSMUSG00000022020.16_12	chr14	-	4062	21	NIC	ENSMUSG00000022020.16	novel	13223	20	NA	NA	-33	-315	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	55.2484388919723	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCATGCAGAGTTGCTTG	NA	False	NA	-30	True	AATAAA	-3	NA	79628165	79571958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588128_79588271_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
ENSMUSG00000022021.15_0	chr14	-	4549	28	FSM	ENSMUSG00000022021.15	ENSMUST00000022599.14	4582	28	30	3	-24	-3	multi-exon	FALSE	non_canonical	0	0	junction_5	42.6759570646689	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAAGACGTATGTCTCT	NA	False	NA	NA	False	AATAAA	-21	NA	87378630	86892805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
ENSMUSG00000022021.15_24	chr14	-	4519	27	NIC	ENSMUSG00000022021.15	novel	4582	28	NA	NA	27	-3	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_5	54.2548773473531	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAAGACGTATGTCTCT	NA	False	NA	NA	False	AATAAA	-21	NA	87378633	86892805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87378433
ENSMUSG00000022021.15_51	chr14	-	3352	27	ISM	ENSMUSG00000022021.15	ENSMUST00000022599.14	4582	28	39	116694	-15	0	5prime_fragment	FALSE	non_canonical	0	0	junction_4	43.0116951207432	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTATTCTTACCTGCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	87378621	87009496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
ENSMUSG00000022022.4_0	chr14	+	1769	11	FSM	ENSMUSG00000022022.4	ENSMUST00000022600.4	1799	11	31	-1	31	1	multi-exon	FALSE	canonical	3	73	junction_10	10.5683489722851	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGATGTGCCTACAGAGTT	NA	False	NA	2	True	AATAAA	-13	NA	79635242	79661028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_79635477_79637131_79637240_79638861_79639288_79640264_79640357_79644016_79644099_79644285_79644394_79649081_79649255_79650426_79650545_79653317_79653455_79656627_79656727_79660836
ENSMUSG00000022023.7_0	chr14	-	2208	10	FSM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	480	1016	-78	-3	multi-exon	FALSE	canonical	3	326	junction_1	16.1780219761789	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAACCATAAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	79718480	79698392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_79699570_79703622_79703790_79704712_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
ENSMUSG00000022024.11_0	chr14	+	1090	13	FSM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	82	6220	-36	0	multi-exon	FALSE	canonical	3	1684	junction_8	86.763527603609	936	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCGTGTGTTCGAGAGAG	NA	False	NA	30	True	AATAAA	-19	NA	79825212	79866416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
ENSMUSG00000022031.7_1	chr14	-	2770	15	FSM	ENSMUSG00000022031.7	ENSMUST00000225355.2	2771	15	-8	9	-8	-3	multi-exon	FALSE	canonical	3	153	junction_14	90.9467493893531	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATAAAAGAGTCGTCGTG	3459	False	NA	NA	False	AATAAA	-7	NA	65830509	65767906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
ENSMUSG00000022031.7_2	chr14	-	2815	15	FSM	ENSMUSG00000022031.7	ENSMUST00000022609.7	2851	15	27	9	2	-3	multi-exon	FALSE	canonical	3	390	junction_14	46.0192949772602	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATAAAAGAGTCGTCGTG	3471	False	NA	NA	False	AATAAA	-7	NA	65830497	65767906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
ENSMUSG00000022032.15_0	chr14	+	3785	9	FSM	ENSMUSG00000022032.15	ENSMUST00000022610.15	3794	9	2	7	2	-7	multi-exon	FALSE	canonical	3	27	junction_2	7.61474720525902	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGATGTTGCTGATAAG	820	False	NA	NA	False	AATAAA	-12	NA	65903853	66002268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_65904196_65908005_65908124_65927216_65927346_65967969_65968645_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
ENSMUSG00000022032.15_10	chr14	+	2870	6	ISM	ENSMUSG00000022032.15	ENSMUST00000022610.15	3794	9	64444	7	54370	-7	3prime_fragment	FALSE	canonical	3	43	junction_1	1.72046505340853	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGATGTTGCTGATAAG	NA	False	NA	NA	False	AATAAA	-12	NA	65968295	66002268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_65968645_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
ENSMUSG00000022032.15_12	chr14	+	2244	2	ISM	ENSMUSG00000022032.15	ENSMUST00000022610.15	3794	9	93237	1	83163	-1	3prime_fragment	FALSE	canonical	3	48	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGCTGATAAGTGGTCC	NA	False	NA	NA	False	AATAAA	-18	NA	65997088	66002274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_65997229_66000170
ENSMUSG00000022032.15_13	chr14	+	1712	1	ISM	ENSMUSG00000022032.15	ENSMUST00000022610.15	3794	9	96705	7	86631	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGATGTTGCTGATAAG	NA	False	NA	NA	False	AATAAA	-12	NA	66000556	66002268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_66000600_66002300
ENSMUSG00000022032.15_3	chr14	+	3106	8	NIC	ENSMUSG00000022032.15	novel	3794	9	NA	NA	6	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	15.7829667938676	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGATGTTGCTGATAAG	824	False	NA	NA	False	AATAAA	-12	NA	65903857	66002268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_65904196_65908005_65908124_65927216_65927346_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
ENSMUSG00000022032.15_8	chr14	+	3510	8	NIC	ENSMUSG00000022032.15	novel	3179	8	NA	NA	97	-7	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	14.8172541453592	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGATGTTGCTGATAAG	NA	False	NA	NA	False	AATAAA	-12	NA	65914022	66002268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_65914208_65927216_65927346_65967969_65968645_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
ENSMUSG00000022033.10_1	chr14	+	1664	8	FSM	ENSMUSG00000022033.10	ENSMUST00000022612.10	1720	8	51	5	-49	-5	multi-exon	FALSE	canonical	3	729	junction_5	59.6342594316319	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCACCTCAGCATTATCTG	NA	False	NA	20	True	AATAAA	-36	NA	66043336	66055266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
ENSMUSG00000022033.10_13	chr14	+	1486	8	NIC	ENSMUSG00000022033.10	novel	451	5	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	250.309767272148	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCACCTCAGCATTATCTG	NA	False	NA	20	True	AATAAA	-36	NA	66043682	66055266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_66043752_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
ENSMUSG00000022034.11_0	chr14	-	2835	11	FSM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	76	2	-10	-2	multi-exon	FALSE	canonical	3	933	junction_8	61.5078043828586	1555	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCATTGTTCAGTGGCT	6420	False	NA	-13	True	ATTAAA	-12	NA	66071367	66056488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
ENSMUSG00000022035.7_0	chr14	+	2159	9	FSM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	66	5	8	-5	multi-exon	FALSE	canonical	3	231	junction_2	11.4229757506527	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGGGCATTGATATCTG	NA	False	NA	26	True	AATAAA	-15	NA	66074816	66104051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
ENSMUSG00000022035.7_17	chr14	+	1176	1	ISM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	28127	3	28069	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGGCATTGATATCTGAA	NA	False	NA	28	True	AATAAA	-17	NA	66102877	66104053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_66102900_66104100
ENSMUSG00000022037.16_0	chr14	+	1643	9	FSM	ENSMUSG00000022037.16	ENSMUST00000022616.14	1810	9	161	6	2	-6	multi-exon	TRUE	canonical	3	13	junction_1	2.72717802865893	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTGTCCCTTGGGTCTGT	NA	False	NA	7	True	AATAAA	-14	NA	66206092	66218990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_66206138_66209180_66209302_66210773_66210923_66212291_66212463_66213029_66213442_66214354_66214460_66217099_66217330_66218302_66218479_66218756
ENSMUSG00000022040.9_2	chr14	-	2031	19	FSM	ENSMUSG00000022040.9	ENSMUST00000070515.2	2035	19	2	2	2	-2	multi-exon	FALSE	canonical	3	171	junction_15	18.7001188350354	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCAGTTTCTTGTGTTCT	NA	False	NA	-7	True	AATAAA	-14	NA	66361947	66321827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66361783
ENSMUSG00000022043.20_0	chr14	+	3637	6	FSM	ENSMUSG00000022043.20	ENSMUST00000022623.13	3678	6	35	6	0	-6	multi-exon	FALSE	canonical	3	340	junction_4	10.4957134107215	992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCAGTGAGTTGTTTTTT	NA	False	NA	25	True	NA	NA	NA	66534514	66548867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_66534999_66540629_66540726_66541453_66541685_66544474_66544498_66545260_66545380_66546183
ENSMUSG00000022043.20_2	chr14	+	1055	1	FSM	ENSMUSG00000022043.20	ENSMUST00000223737.2	1057	1	-3	5	-3	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAGAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-11	NA	66534511	66535566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_66534500_66535600
ENSMUSG00000022043.20_20	chr14	+	1779	1	ISM	ENSMUSG00000022043.20	ENSMUST00000022623.13	3678	6	12609	6	12550	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCAGTGAGTTGTTTTTT	NA	False	NA	25	True	NA	NA	NA	66547088	66548867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_66547100_66548900
ENSMUSG00000022048.9_1	chr14	-	2048	1	ISM	ENSMUSG00000022048.9	ENSMUST00000022629.9	4520	14	63776	1	63776	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTGTGTCTGTATTGAG	NA	False	NA	-2	True	AATAAA	-19	NA	67042361	67040313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_67040300_67042400
ENSMUSG00000022051.16_0	chr14	-	1758	1	ISM	ENSMUSG00000022051.16	ENSMUST00000111115.8	3259	7	21851	9	2836	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACCTGCCTGTCCATA	NA	False	NA	-21	True	ATTAAA	-7	NA	67224454	67222696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_67222700_67224500
ENSMUSG00000022051.16_1	chr14	-	2301	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	26	911	5	-911	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATTTTGTGAGTTAT	NA	False	NA	NA	False	GATAAA	-11	NA	67246300	67223598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
ENSMUSG00000022052.10_0	chr14	-	2394	10	FSM	ENSMUSG00000022052.10	ENSMUST00000089230.7	4010	10	1	1615	1	3	multi-exon	FALSE	canonical	3	602	junction_4	68.1900032498157	1031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTGGTTTTCTTTTTC	NA	False	NA	-2	True	AATAAA	-16	NA	67309892	67253119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538
ENSMUSG00000022052.10_2	chr14	-	2467	11	NIC	ENSMUSG00000022052.10	novel	2192	11	NA	NA	1	5	combination_of_known_junctions	FALSE	canonical	3	23	junction_8	281.93305943078	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGTTTTCTTTTTCTT	NA	False	NA	0	True	AATAAA	-18	NA	67309892	67253117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67275386_67275458_67276323_67276422_67307683_67307759_67309538
ENSMUSG00000022054.12_1	chr14	-	3064	3	FSM	ENSMUSG00000022054.12	ENSMUST00000022638.6	3334	3	0	270	0	-270	multi-exon	FALSE	canonical	3	13	junction_2	6.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATAAGCCAAATGTGTG	NA	False	NA	-11	True	AATAAA	-12	NA	68362295	68357001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_68358834_68360269_68360395_68361188
ENSMUSG00000022054.12_3	chr14	-	2006	2	ISM	ENSMUSG00000022054.12	ENSMUST00000022638.6	3334	3	1858	264	1858	-264	3prime_fragment	FALSE	canonical	3	26	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCAAATGTGTGGTGATG	NA	False	NA	-5	True	AATAAA	-18	NA	68360437	68356995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_68358834_68360269
ENSMUSG00000022054.12_5	chr14	-	1494	1	ISM	ENSMUSG00000022054.12	ENSMUST00000022638.6	3334	3	3800	270	3800	-270	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATAAGCCAAATGTGTG	NA	False	NA	-11	True	AATAAA	-12	NA	68358495	68357001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_68357000_68358500
ENSMUSG00000022055.8_0	chr14	+	2173	4	FSM	ENSMUSG00000022055.8	ENSMUST00000022639.8	3380	4	1	1206	1	-1206	multi-exon	FALSE	canonical	3	158	junction_3	13.589211407093	386	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGCTGTGGTTTTTA	NA	False	NA	13	True	AATAAA	-27	NA	68321312	68325338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_68322459_68323422_68323548_68323935_68324256_68324756
ENSMUSG00000022064.11_0	chr14	+	2536	17	ISM	ENSMUSG00000022064.11	ENSMUST00000022650.9	2797	18	-5	11417	-5	-4	5prime_fragment	FALSE	canonical	2	66	junction_8	17.3285124505827	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATATTTGTTTTAAACT	NA	False	NA	NA	False	AATATA	-14	NA	99337337	99480512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274
ENSMUSG00000022064.11_1	chr14	+	4333	16	ISM	ENSMUSG00000022064.11	ENSMUST00000022650.9	2797	18	-5	30815	-5	0	5prime_fragment	FALSE	canonical	2	66	junction_8	17.8940089291236	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGTCTGTCAACTCT	NA	False	NA	NA	False	AATAAA	-16	NA	99337337	99461114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994
ENSMUSG00000022064.11_3	chr14	+	2794	18	FSM	ENSMUSG00000022064.11	ENSMUST00000022650.9	2797	18	1	2	1	-2	multi-exon	FALSE	canonical	2	66	junction_8	18.7005171736119	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTAGACTGTAGAGTTTT	NA	False	NA	13	True	AATAAA	-15	NA	99337343	99491927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274_99480446_99491596
ENSMUSG00000022064.11_6	chr14	+	2653	18	NNC	ENSMUSG00000022064.11	novel	2797	18	NA	NA	1	-4615	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_17	29.8465510402214	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99337343	99487314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274_99480446_99487124
ENSMUSG00000022066.17_0	chr14	+	3007	13	FSM	ENSMUSG00000022066.17	ENSMUST00000185072.8	3589	13	-6	588	-6	466	multi-exon	FALSE	canonical	3	83	junction_8	35.9663229826026	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGACTTGACATTTTA	NA	False	NA	NA	False	AATAAA	-12	NA	69792866	69822381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69812849_69814520_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218
ENSMUSG00000022066.17_1	chr14	+	2982	13	NNC	ENSMUSG00000022066.17	novel	3589	13	NA	NA	-5	466	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_8	28.7614711414806	123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGACTTGACATTTTA	NA	False	NA	NA	False	AATAAA	-12	NA	69792867	69822381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69812825_69814520_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218
ENSMUSG00000022066.17_2	chr14	+	4680	12	NIC	ENSMUSG00000022066.17	novel	3589	13	NA	NA	-7	466	intron_retention	FALSE	canonical	3	160	junction_8	20.520499728099	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGACTTGACATTTTA	NA	False	NA	NA	False	AATAAA	-12	NA	69792865	69822381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218
ENSMUSG00000022070.8_0	chr14	+	2678	12	FSM	ENSMUSG00000022070.8	ENSMUST00000022656.8	2726	12	45	3	-32	-2	multi-exon	FALSE	canonical	3	218	junction_1	51.3357124417381	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGTCGTTTTCCTTGTTC	NA	False	NA	2	True	AATAAA	-13	NA	99283857	99311973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
ENSMUSG00000022070.8_2	chr14	+	2707	12	NNC	ENSMUSG00000022070.8	novel	2726	12	NA	NA	-34	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	93.6248006982398	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGTCGTTTTCCTTGTTC	NA	False	NA	2	True	AATAAA	-13	NA	99283855	99311973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310212_99311081
ENSMUSG00000022074.7_0	chr14	+	1847	8	FSM	ENSMUSG00000022074.7	ENSMUST00000022663.7	3179	8	14	1318	1	419	multi-exon	FALSE	canonical	0	0	junction_5	19.7556501863572	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAGCCACTGCTGTTTA	NA	False	NA	NA	False	AATAAA	-28	NA	70004934	70020542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015169_70015265_70017952_70018023_70019680
ENSMUSG00000022074.7_10	chr14	+	2327	3	ISM	ENSMUSG00000022074.7	ENSMUST00000022663.7	3179	8	10249	18	252	-18	3prime_fragment	FALSE	canonical	3	46	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCTTTTTAAAAAAGAGA	NA	False	NA	-14	True	NA	NA	NA	70015169	70021842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_70015265_70017952_70018023_70019680
ENSMUSG00000022074.7_12	chr14	+	1560	1	ISM	ENSMUSG00000022074.7	ENSMUST00000022663.7	3179	8	15358	22	5361	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATCTTTTTAAAAAA	NA	False	NA	-18	True	NA	NA	NA	70020278	70021838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_70020300_70021800
ENSMUSG00000022074.7_3	chr14	+	3164	8	NNC	ENSMUSG00000022074.7	novel	3179	8	NA	NA	3	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	19.7556501863572	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAGAGCAGTGTACG	NA	False	NA	-4	True	NA	NA	NA	70004936	70021852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015160_70015265_70017952_70018023_70019680
ENSMUSG00000022074.7_7	chr14	+	2685	6	FSM	ENSMUSG00000022074.7	ENSMUST00000224533.2	2787	6	25	77	25	-77	multi-exon	FALSE	canonical	0	0	junction_5	22.5831795812724	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATGTAATGCTGACCTTT	NA	False	NA	NA	False	NA	NA	NA	70004958	70017058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015169
ENSMUSG00000022075.8_0	chr14	-	3111	5	ISM	ENSMUSG00000022075.8	ENSMUST00000022665.4	5322	10	9722	-4	4908	4	3prime_fragment	FALSE	canonical	3	93	junction_1	13.6267200749116	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTTGTACTGTTTTATA	NA	False	NA	0	True	AATACA	-23	NA	70033363	70022434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_70025185_70025306_70025413_70026080_70026170_70031352_70031504_70033348
ENSMUSG00000022075.8_3	chr14	-	4051	10	FSM	ENSMUSG00000022075.8	ENSMUST00000022665.4	5322	10	-7	1278	-7	-1278	multi-exon	FALSE	canonical	3	83	junction_6	15.5737988261228	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACTGGAGAACAGGCTAC	NA	False	NA	NA	False	ATTAAA	-14	NA	70043092	70023716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70025185_70025306_70025413_70026080_70026170_70031352_70031504_70033348_70033468_70033722_70034742_70035587_70035774_70037126_70037231_70038066_70038269_70042485
ENSMUSG00000022075.8_4	chr14	-	1994	1	ISM	ENSMUSG00000022075.8	ENSMUST00000022665.4	5322	10	18647	6	13833	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAATGACAAGTCTTGTA	NA	False	NA	-10	True	AATACA	-13	NA	70024438	70022444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_70022400_70024400
ENSMUSG00000022075.8_5	chr14	-	3618	6	ISM	ENSMUSG00000022075.8	ENSMUST00000022665.4	5322	10	8950	6	4136	-6	3prime_fragment	FALSE	canonical	3	88	junction_5	16.3511467487758	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAATGACAAGTCTTGTA	NA	False	NA	-10	True	AATACA	-13	NA	70034135	70022444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_70025185_70025306_70025413_70026080_70026170_70031352_70031504_70033348_70033468_70033722
ENSMUSG00000022075.8_6	chr14	-	3595	8	ISM	ENSMUSG00000022075.8	ENSMUST00000022665.4	5322	10	5879	901	1065	-901	3prime_fragment	FALSE	canonical	3	83	junction_6	17.1785343034942	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAAATGCAACCTACA	NA	False	NA	NA	False	ATTAAA	-9	NA	70037206	70023339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_70025185_70025306_70025413_70026080_70026170_70031352_70031504_70033348_70033468_70033722_70034742_70035587_70035774_70037126
ENSMUSG00000022089.10_0	chr14	+	1504	9	FSM	ENSMUSG00000022089.10	ENSMUST00000022680.9	1767	9	13	250	-5	-250	multi-exon	FALSE	canonical	3	54	junction_3	8.98523093748847	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACAACAGTGTACTTTA	NA	False	NA	NA	False	AGTAAA	-10	NA	70337566	70375405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_70337646_70356052_70356102_70361289_70361331_70361631_70361694_70366298_70366436_70366966_70367008_70371898_70372041_70372184_70372320_70374587
ENSMUSG00000022089.10_1	chr14	+	921	8	ISM	ENSMUSG00000022089.10	ENSMUST00000022680.9	1767	9	11	3103	-7	577	5prime_fragment	FALSE	canonical	3	54	junction_3	8.9511143987546	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAACTCTTCGCCCCTT	NA	False	NA	NA	False	NA	NA	NA	70337564	70372552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_70337646_70356052_70356102_70361289_70361331_70361631_70361694_70366298_70366436_70366966_70367008_70371898_70372041_70372184
ENSMUSG00000022089.10_2	chr14	+	1674	9	NIC	ENSMUSG00000022089.10	novel	1767	9	NA	NA	3	-250	combination_of_known_junctions	FALSE	canonical	2	2	junction_3	25.3250740374041	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACAACAGTGTACTTTA	NA	False	NA	NA	False	AGTAAA	-10	NA	70337557	70375405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_70337646_70356052_70356102_70361289_70361492_70361631_70361694_70366298_70366436_70366966_70367008_70371898_70372041_70372184_70372320_70374587
ENSMUSG00000022091.7_1	chr14	-	1891	10	NNC	ENSMUSG00000022091.7	novel	3061	21	NA	NA	12658	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	7.37027731190089	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCCTGTCTGCTTCATT	-22	False	NA	NA	False	AATAAA	-15	NA	70429414	70417917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_70418681_70421114_70421222_70421455_70421557_70422276_70422586_70424307_70424434_70428176_70428292_70428464_70428512_70428596_70428650_70428881_70429025_70429287
ENSMUSG00000022091.7_2	chr14	-	1922	10	ISM	ENSMUSG00000022091.7	ENSMUST00000227259.2	2481	21	12380	-463	12380	-1	3prime_fragment	FALSE	canonical	3	14	junction_5	4.24554959434284	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCCTGTCTGCTTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	70429692	70417917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_70418681_70421114_70421222_70421455_70421557_70422276_70422586_70424307_70424434_70428176_70428292_70428464_70428512_70428596_70428650_70428881_70429025_70429534
ENSMUSG00000022091.7_6	chr14	-	2891	21	FSM	ENSMUSG00000022091.7	ENSMUST00000227653.2	3061	21	168	2	168	-2	multi-exon	FALSE	canonical	0	0	junction_11	10.3990384170845	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGCCTGTCTGCTTCAT	156	False	NA	NA	False	AATAAA	-14	NA	70443303	70417918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70418681_70421114_70421222_70421455_70421557_70422276_70422586_70424307_70424434_70428176_70428292_70428464_70428512_70428596_70428650_70428881_70429025_70429534_70429597_70430055_70430143_70430854_70430909_70431009_70431097_70431309_70431401_70432861_70432956_70433371_70433411_70436730_70436795_70438797_70438992_70440379_70440498_70440720_70440866_70443210
ENSMUSG00000022092.12_0	chr14	-	1992	14	FSM	ENSMUSG00000022092.12	ENSMUST00000078434.8	1970	14	8	-30	8	-3	multi-exon	TRUE	canonical	2	11	junction_1	4.03827838412513	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCCCCTTGTCCTAATT	9194	False	NA	NA	False	NA	NA	NA	70526912	70455316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70455727_70457465_70457496_70461758_70461857_70462415_70462498_70472588_70472658_70473926_70474053_70478177_70478273_70478352_70478431_70483301_70483442_70485022_70485169_70493808_70493921_70504078_70504204_70504757_70504956_70526629
ENSMUSG00000022092.12_2	chr14	-	2490	13	FSM	ENSMUSG00000022092.12	ENSMUST00000228265.2	2494	13	2	2	2	-2	multi-exon	FALSE	canonical	2	5	junction_1	4.93006648591635	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTTTTAAAAGCCTGT	9209	False	NA	NA	False	AATAAA	-15	NA	70526897	70460427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70461381_70461758_70461857_70462415_70462498_70472588_70472658_70473926_70474053_70478177_70478273_70478352_70478431_70483301_70483442_70485022_70485169_70493808_70493921_70504078_70504204_70504757_70504956_70526629
ENSMUSG00000022092.12_3	chr14	-	1197	8	ISM	ENSMUSG00000022092.12	ENSMUST00000228265.2	2494	13	-18	17737	3	-17737	5prime_fragment	FALSE	canonical	2	12	junction_1	4.29047354790892	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCTTAGTGTGAATTGT	9189	False	NA	NA	False	AATAAA	-17	NA	70526917	70478162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_70478273_70478352_70478431_70483301_70483442_70485022_70485169_70493808_70493921_70504078_70504204_70504757_70504956_70526629
ENSMUSG00000022094.16_11	chr14	-	4841	9	NIC	ENSMUSG00000022094.16	novel	4926	10	NA	NA	-5	8	combination_of_known_junctions	TRUE	canonical	0	0	junction_8	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCCAAGTGTCGGCTTGC	NA	False	NA	8	True	AATAAA	-21	NA	70588879	70540909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_70544262_70546098_70546284_70547206_70547415_70547531_70547721_70548304_70548425_70551049_70551220_70553886_70554074_70556110_70556390_70588728
ENSMUSG00000022094.16_2	chr14	-	4231	6	NIC	ENSMUSG00000022094.16	novel	4926	10	NA	NA	-2697	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	4.4988887516808	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGTGAGTCCCAAGTGT	NA	False	NA	0	True	AATAAA	-13	NA	70554071	70540917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_70544262_70546098_70546284_70547206_70547415_70547531_70547721_70548304_70548425_70553886
ENSMUSG00000022094.16_3	chr14	-	2641	1	ISM	ENSMUSG00000022094.16	ENSMUST00000068044.14	4926	10	45316	0	5131	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGTGAGTCCCAAGTGT	NA	False	NA	0	True	AATAAA	-13	NA	70543558	70540917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_70540900_70543600
ENSMUSG00000022094.16_5	chr14	-	3643	3	ISM	ENSMUSG00000022094.16	ENSMUST00000152067.8	2075	10	38560	-2814	1369	0	3prime_fragment	FALSE	canonical	3	10	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGTGAGTCCCAAGTGT	NA	False	NA	0	True	AATAAA	-13	NA	70547320	70540917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_70544262_70546098_70546284_70547206
ENSMUSG00000022094.16_6	chr14	-	4915	10	FSM	ENSMUSG00000022094.16	ENSMUST00000068044.14	4926	10	10	1	0	-1	multi-exon	FALSE	canonical	2	7	junction_9	2.18298696715428	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGAGTCCCAAGTG	NA	False	NA	-1	True	AATAAA	-12	NA	70588864	70540918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70544262_70546098_70546284_70547206_70547415_70547531_70547721_70548304_70548425_70551049_70551220_70553886_70554074_70556110_70556390_70568717_70568816_70588728
ENSMUSG00000022096.15_1	chr14	+	3319	15	ISM	ENSMUSG00000022096.15	ENSMUST00000163060.2	5278	18	3890	9	3890	-9	3prime_fragment	FALSE	canonical	0	0	junction_2	5.67845911838623	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATAAATAGAACATCTGT	NA	False	NA	NA	False	AATAAA	-8	NA	70797229	70810975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_70797504_70799251_70799417_70800768_70800859_70801006_70801123_70802741_70802824_70803468_70803633_70803749_70803987_70804219_70804386_70804588_70804659_70804941_70805073_70805215_70805336_70805416_70805533_70808817_70808983_70809347_70809477_70809681
ENSMUSG00000022096.15_3	chr14	+	2867	12	ISM	ENSMUSG00000022096.15	ENSMUST00000163060.2	5278	18	7593	6	7593	-6	3prime_fragment	FALSE	canonical	2	7	junction_11	3.66804381851491	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATAGAACATCTGTTCC	NA	False	NA	NA	False	AATAAA	-11	NA	70800932	70810978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_70801123_70802741_70802824_70803468_70803633_70803749_70803987_70804219_70804386_70804588_70804659_70804941_70805073_70805215_70805336_70805416_70805533_70808817_70808983_70809347_70809477_70809681
ENSMUSG00000022096.15_7	chr14	+	5719	19	FSM	ENSMUSG00000022096.15	ENSMUST00000161069.8	5607	19	526	-638	157	-6	multi-exon	FALSE	canonical	0	0	junction_1	6.15539510420646	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATAGAACATCTGTTCC	NA	False	NA	NA	False	AATAAA	-11	NA	70791652	70810978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_70792548_70793787_70794441_70795068_70795850_70797078_70797230_70797312_70797504_70799251_70799417_70800768_70800859_70801006_70801123_70802741_70802824_70803468_70803633_70803749_70803987_70804219_70804386_70804588_70804659_70804941_70805073_70805215_70805336_70805416_70805533_70808817_70808983_70809347_70809477_70809681
ENSMUSG00000022098.11_0	chr14	-	3753	20	FSM	ENSMUSG00000022098.11	ENSMUST00000022693.9	3684	20	-72	3	-26	-1	multi-exon	FALSE	canonical	1	1	junction_3	1.84885979686845	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATATCCTGTGCCAGATGC	8921	False	NA	NA	False	AATAAA	-17	NA	70757700	70712000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70712690_70715292_70715544_70716984_70717199_70717593_70717722_70723586_70723713_70727459_70727641_70727986_70728148_70728790_70728917_70729515_70729712_70729844_70729991_70730218_70730336_70732152_70732256_70742121_70742238_70742771_70742897_70744892_70744999_70745438_70745618_70745895_70746014_70746189_70746355_70749020_70749135_70757308
ENSMUSG00000022099.18_10	chr14	-	2660	14	NIC	ENSMUSG00000022099.18	novel	4176	15	NA	NA	20	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	54.765773443168	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTATTGTTTCTATCCA	NA	False	NA	-3	True	ATTAAA	-19	NA	70864474	70841112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_70842295_70842407_70842489_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
ENSMUSG00000022099.18_14	chr14	-	2445	14	NNC	ENSMUSG00000022099.18	novel	4176	15	NA	NA	81	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	67.7670042417792	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTAAATCTATTGTTTCT	NA	False	NA	-8	True	ATTAAA	-14	NA	70873337	70841117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_70842295_70842407_70842497_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70873259
ENSMUSG00000022099.18_2	chr14	-	2638	14	NNC	ENSMUSG00000022099.18	novel	4176	15	NA	NA	50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	54.765773443168	147	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTATTGTTTCTATCCA	NA	False	NA	-3	True	ATTAAA	-19	NA	70864444	70841112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_70842295_70842407_70842497_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
ENSMUSG00000022099.18_3	chr14	-	2688	15	NIC	ENSMUSG00000022099.18	novel	5418	16	NA	NA	58	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	59.4984565054474	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTATTGTTTCTATCCA	NA	False	NA	-3	True	ATTAAA	-19	NA	70864436	70841112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_70842295_70842407_70842489_70842736_70842803_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
ENSMUSG00000022099.18_5	chr14	-	807	1	ISM	ENSMUSG00000022099.18	ENSMUST00000022694.17	5418	16	22829	2410	12913	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTATTGTTTCTATCCA	NA	False	NA	-3	True	ATTAAA	-19	NA	70841919	70841112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_70841100_70841900
ENSMUSG00000022099.18_8	chr14	-	2488	15	NIC	ENSMUSG00000022099.18	novel	5418	16	NA	NA	101	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	70.0381820064992	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTATTGTTTCTATCCA	NA	False	NA	-3	True	ATTAAA	-19	NA	70873317	70841112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_70842295_70842407_70842489_70842736_70842803_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70873259
ENSMUSG00000022100.15_0	chr14	-	4804	28	FSM	ENSMUSG00000022100.15	ENSMUST00000022696.8	4472	28	-55	-277	19	277	multi-exon	FALSE	canonical	0	0	junction_12	88.8509332544799	911	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACCTGGTTTCAGCAGT	NA	False	NA	-17	True	AATAAA	-15	NA	71004049	70901980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70903535_70904461_70904590_70906099_70906199_70906756_70906918_70907990_70908130_70908491_70908707_70909088_70909172_70914146_70914255_70915518_70915608_70918678_70918786_70919772_70919882_70920232_70920297_70921095_70921177_70922299_70922374_70922861_70922998_70925067_70925174_70925566_70925761_70928421_70928595_70930090_70930238_70931356_70931477_70933053_70933128_70933990_70934157_70936381_70936487_70939159_70939226_70940662_70940830_70942103_70942198_70944726_70944874_71003951
ENSMUSG00000022101.7_0	chr14	-	1612	5	FSM	ENSMUSG00000022101.7	ENSMUST00000227123.2	1336	5	28	-304	28	-2	multi-exon	FALSE	canonical	3	35	junction_3	9.90896059130321	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGGGTCCGCTGAAGAAA	NA	False	NA	-2	True	AATAAA	-14	NA	70879666	70873644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70874464_70875906_70876014_70876241_70876387_70878971_70879009_70879162
ENSMUSG00000022101.7_6	chr14	-	1693	5	FSM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	-6	2	-6	-2	multi-exon	FALSE	canonical	3	21	junction_3	15.3195136998535	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGGGTCCGCTGAAGAAA	NA	False	NA	-2	True	AATAAA	-14	NA	70879714	70873644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162
ENSMUSG00000022101.7_7	chr14	-	4287	4	NIC	ENSMUSG00000022101.7	novel	1689	5	NA	NA	-48	-2	intron_retention	FALSE	canonical	3	49	junction_3	6.37704215656966	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGGGTCCGCTGAAGAAA	NA	False	NA	-2	True	AATAAA	-14	NA	70879756	70873644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_70874464_70875906_70876014_70876241_70879009_70879162
ENSMUSG00000022102.14_2	chr14	+	3846	4	NIC	ENSMUSG00000022102.14	novel	1795	5	NA	NA	-69	-6	intron_retention	FALSE	canonical	1	3	junction_1	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTACTCTTCTGTGGCCTG	NA	False	NA	NA	False	ATTAAA	-10	NA	71010642	71015929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_71013188_71013423_71013512_71014255_71014438_71014898
ENSMUSG00000022102.14_4	chr14	+	1706	5	NIC	ENSMUSG00000022102.14	novel	404	3	NA	NA	-32	-8	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	2.38484800354236	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAACTACTCTTCTGTGGCC	NA	False	NA	NA	False	ATTAAA	-8	NA	71010679	71015927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_71010805_71012905_71013188_71013423_71013512_71014255_71014438_71014898
ENSMUSG00000022103.11_0	chr14	+	3454	9	FSM	ENSMUSG00000022103.11	ENSMUST00000022699.10	3472	9	10	8	10	7	multi-exon	FALSE	canonical	0	0	junction_6	2.43669858620224	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTTCACTCCCGTGTGT	NA	False	NA	18	True	AATAAA	-23	NA	71127569	71217270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_71128335_71133211_71133527_71138928_71139013_71163157_71163513_71203646_71203757_71204436_71204578_71205683_71205857_71214695_71214750_71215813
ENSMUSG00000022105.7_0	chr14	-	4643	27	FSM	ENSMUSG00000022105.7	ENSMUST00000022701.7	4656	27	4	9	4	-9	multi-exon	FALSE	canonical	3	21	junction_3	9.67129896490844	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCTTACTGGTGTGATA	NA	False	NA	-22	True	AATAAA	-11	NA	73563258	73432950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_73434725_73435971_73436022_73436621_73436765_73440264_73440296_73443183_73443348_73443449_73443564_73444654_73444760_73449043_73449190_73450423_73450570_73454103_73454220_73499968_73500166_73501732_73501810_73501889_73501922_73502012_73502070_73502955_73503073_73506550_73506639_73510072_73510151_73511076_73511187_73515853_73515932_73517561_73517705_73520307_73520419_73525042_73525111_73526148_73526188_73532350_73532471_73535493_73535610_73559456_73559584_73562962
ENSMUSG00000022105.7_5	chr14	-	2541	17	ISM	ENSMUSG00000022105.7	ENSMUST00000022701.7	4656	27	-166	66510	-166	388	5prime_fragment	FALSE	canonical	3	27	junction_5	7.88194138521722	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTTTTATCTGTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	73563428	73499451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_73500166_73501732_73501810_73501889_73501922_73502012_73502070_73502955_73503073_73506550_73506639_73510072_73510151_73511076_73511187_73515853_73515932_73517561_73517705_73520307_73520419_73525042_73525111_73526148_73526188_73532350_73532471_73535493_73535610_73559456_73559584_73562962
ENSMUSG00000022105.7_8	chr14	-	230	1	ISM	ENSMUSG00000022105.7	ENSMUST00000022701.7	4656	27	130090	1	7534	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGTGTGATATGATCTCT	NA	False	NA	-14	True	AATAAA	-19	NA	73433172	73432942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_73432900_73433200
ENSMUSG00000022106.15_11	chr14	+	1906	14	NIC	ENSMUSG00000022106.15	novel	3573	16	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	11.7940913900129	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAAGCCATTGACGAA	NA	False	NA	NA	False	NA	NA	NA	73380492	73420121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ENSMUSG00000022106.15_2	chr14	+	2128	15	NIC	ENSMUSG00000022106.15	novel	3573	16	NA	NA	5	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_9	6.89720440261332	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAAAAAGCCATTGACGA	NA	False	NA	NA	False	NA	NA	NA	73380436	73420120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ENSMUSG00000022106.15_3	chr14	+	2024	16	FSM	ENSMUSG00000022106.15	ENSMUST00000169513.8	3622	16	55	1543	-3	-7	multi-exon	FALSE	canonical	1	2	junction_5	12.7774106227444	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTACCAAAAAAAGCCATT	NA	False	NA	NA	False	NA	NA	NA	73380593	73420115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73395827_73395886_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ENSMUSG00000022106.15_5	chr14	+	1467	10	ISM	ENSMUSG00000022106.15	ENSMUST00000169479.8	3351	14	10913	1368	458	-3	3prime_fragment	FALSE	canonical	3	22	junction_4	7.22820265212915	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAAAAAAAGCCATTGACG	NA	False	NA	NA	False	NA	NA	NA	73399837	73420119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ENSMUSG00000022106.15_6	chr14	+	1241	9	ISM	ENSMUSG00000022106.15	ENSMUST00000169479.8	3351	14	13312	1401	2857	-36	3prime_fragment	FALSE	canonical	3	22	junction_3	7.54983443527075	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGATAAATAAATAAATGA	NA	False	NA	NA	False	NA	NA	NA	73402236	73420086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ENSMUSG00000022106.15_8	chr14	+	2115	15	NIC	ENSMUSG00000022106.15	novel	3573	16	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_3	10.9274042327218	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGCCATTGACGAAC	NA	False	NA	NA	False	NA	NA	NA	73380453	73420122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_73380629_73388972_73389056_73391754_73391851_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ENSMUSG00000022106.15_9	chr14	+	2024	14	NIC	ENSMUSG00000022106.15	novel	3573	16	NA	NA	4	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	11.9089246033007	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTACCAAAAAAAGCCATT	NA	False	NA	NA	False	NA	NA	NA	73380452	73420115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_73380629_73391754_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ENSMUSG00000022108.9_0	chr14	-	1114	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	18	664	18	-5	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	537	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAACAAAACCTTTCTTTT	NA	False	NA	-24	True	ATTAAA	-20	NA	73622711	73600329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
ENSMUSG00000022109.7_0	chr14	+	1315	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	12	1	-1	-1	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAATTTTTTTCAATTTT	NA	False	NA	14	True	AATAAA	-16	NA	73747476	73755984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
ENSMUSG00000022109.7_1	chr14	+	2290	6	NIC	ENSMUSG00000022109.7	novel	1328	7	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	317	junction_5	16.1170716943246	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAATTTTTTTCAATTTT	NA	False	NA	14	True	AATAAA	-16	NA	73747470	73755984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
ENSMUSG00000022109.7_10	chr14	+	1601	5	ISM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	3282	-3	3269	3	3prime_fragment	FALSE	canonical	3	317	junction_4	18.0138835346518	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTTTCAATTTTTTAA	NA	False	NA	18	True	AATAAA	-20	NA	73750746	73755988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
ENSMUSG00000022110.14_0	chr14	+	1606	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	125	498	24	-139	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	1337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTACGGTGGTCTCTTT	NA	False	NA	11	True	TATAAA	-14	NA	73790229	73833084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022110.14_7	chr14	+	1425	10	NIC	ENSMUSG00000022110.14	novel	2229	11	NA	NA	24	-139	combination_of_known_splicesites	FALSE	canonical	3	74	junction_1	503.772435397836	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTACGGTGGTCTCTTT	NA	False	NA	11	True	TATAAA	-14	NA	73790229	73833084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_73790338_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022111.10_0	chr14	+	886	9	FSM	ENSMUSG00000022111.10	ENSMUST00000002289.8	903	9	8	9	8	-8	multi-exon	FALSE	canonical	3	3225	junction_5	471.372729376658	1260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCTGTATTTTGTGTTGT	125	False	NA	13	True	AATAAA	-9	NA	101891437	101933552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_101891542_101891643_101891656_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
ENSMUSG00000022111.10_15	chr14	+	1165	5	ISM	ENSMUSG00000022111.10	ENSMUST00000002289.8	903	9	8	28371	8	-68	5prime_fragment	FALSE	canonical	3	4015	junction_1	248.252895249985	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTAAGAATTTTCTCGT	125	False	NA	NA	False	AGTAAA	-11	NA	101891437	101905190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_101891542_101891643_101891656_101903196_101903326_101903947_101904105_101904427
ENSMUSG00000022111.10_4	chr14	+	869	8	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	10	-11	combination_of_known_splicesites	FALSE	canonical	3	44	junction_1	1518.39837745338	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTACCTGTATTTTGTGT	127	False	NA	10	True	AATAAA	-6	NA	101891439	101933549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_101891542_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
ENSMUSG00000022113.7_0	chr14	+	3051	1	FSM	ENSMUSG00000022113.7	ENSMUST00000022708.7	3075	1	26	-2	25	2	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGACATGCTTATATTA	NA	False	NA	NA	False	AATAAA	-17	NA	106343657	106346708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_106343700_106346700
ENSMUSG00000022114.6_0	chr14	-	2384	2	FSM	ENSMUSG00000022114.6	ENSMUST00000022709.6	2087	2	-304	7	-304	-7	multi-exon	FALSE	canonical	3	119	junction_1	0	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTAAGCTGAGCTTGTTT	NA	False	NA	-11	True	TATAAA	-23	NA	106134557	106129387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_106131236_106134021
ENSMUSG00000022114.6_1	chr14	-	1623	1	ISM	ENSMUSG00000022114.6	ENSMUST00000022709.6	2087	2	3243	7	3243	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTAAGCTGAGCTTGTTT	NA	False	NA	-11	True	TATAAA	-23	NA	106131010	106129387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_106129400_106131000
ENSMUSG00000022119.16_13	chr14	-	6343	21	Fusion	ENSMUSG00000091509.8_ENSMUSG00000022119.16	novel	4212	21	NA	NA	-25	-8	multi-exon	FALSE	canonical	3	18	junction_1	48.0837550530322	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAACAGTTGTTAATG	NA	False	NA	NA	False	AATAAA	-9	NA	105414725	105344194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_-_105347239_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ENSMUSG00000022119.16_2	chr14	-	2907	1	ISM	ENSMUSG00000022119.16	ENSMUST00000172122.8	3664	6	20672	8	20672	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAACAGTTGTTAATG	NA	False	NA	NA	False	AATAAA	-9	NA	105347101	105344194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_105344200_105347100
ENSMUSG00000022119.16_33	chr14	-	4075	21	FSM	ENSMUSG00000091509.8_ENSMUSG00000022119.16	ENSMUST00000100327.10	3634	21	27	-468	27	447	multi-exon	FALSE	canonical	3	161	junction_11	26.8445059555955	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105414732	105351953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ENSMUSG00000022119.16_34	chr14	-	4070	21	Fusion	ENSMUSG00000091509.8_ENSMUSG00000022119.16	novel	3634	21	NA	NA	23	447	multi-exon	FALSE	canonical	3	56	junction_9	41.0393408816467	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105414736	105351953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_-_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105377751_105377875_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ENSMUSG00000022119.16_36	chr14	-	4140	22	FSM	ENSMUSG00000091509.8_ENSMUSG00000022119.16	ENSMUST00000022715.14	3633	22	31	-538	27	440	multi-exon	FALSE	canonical	3	64	junction_9	46.4492994023159	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTGATTTAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105414732	105351960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105376526_105376599_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ENSMUSG00000022119.16_57	chr14	-	4132	22	Fusion	ENSMUSG00000091509.8_ENSMUSG00000022119.16	novel	3633	22	NA	NA	-26	447	multi-exon	FALSE	canonical	3	56	junction_10	54.4124252183322	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105414726	105351953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_-_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105376526_105376599_105377751_105377875_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
ENSMUSG00000022120.5_1	chr14	-	3432	6	FSM	ENSMUSG00000022120.5	ENSMUST00000022716.4	3420	6	-18	6	-5	-6	multi-exon	FALSE	canonical	3	75	junction_2	11.8490505948789	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTACATGCTTTTGATGT	NA	False	NA	-7	True	AATAAA	-12	NA	104760086	104714977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_104717734_104740782_104740872_104743528_104743778_104745374_104745467_104747737_104747874_104759976
ENSMUSG00000022120.5_16	chr14	-	3290	5	NIC	ENSMUSG00000022120.5	novel	3420	6	NA	NA	1	-6	combination_of_known_splicesites	FALSE	canonical	2	2	junction_4	35.6405667743935	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTACATGCTTTTGATGT	NA	False	NA	-7	True	AATAAA	-12	NA	104760080	104714977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_104717734_104740782_104740872_104743528_104743778_104745374_104745467_104759976
ENSMUSG00000022120.5_7	chr14	-	1916	1	ISM	ENSMUSG00000022120.5	ENSMUST00000022716.4	3420	6	43173	8	43163	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACTACATGCTTTTGAT	NA	False	NA	-9	True	AATAAA	-10	NA	104716895	104714979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_104715000_104716900
ENSMUSG00000022124.16_0	chr14	-	3351	5	FSM	ENSMUSG00000022124.16	ENSMUST00000145693.8	3352	5	-4	5	-4	-5	multi-exon	FALSE	canonical	3	110	junction_4	32.5451609306207	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATGTGGTTGTATTTTT	9918	False	NA	-9	True	AATAAA	-8	NA	103336439	103318474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336204
ENSMUSG00000022124.16_1	chr14	-	3489	5	FSM	ENSMUSG00000022124.16	ENSMUST00000022720.15	4309	5	22	798	22	-3	multi-exon	FALSE	canonical	3	60	junction_4	52.2894587847302	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTGGTTGTATTTTTAT	9835	False	NA	-7	True	AATAAA	-10	NA	103336968	103318472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336597
ENSMUSG00000022124.16_2	chr14	-	3207	5	FSM	ENSMUSG00000022124.16	ENSMUST00000132004.8	2534	5	-28	-645	-4	-5	multi-exon	FALSE	canonical	3	39	junction_3	61.6050931336038	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATGTGGTTGTATTTTT	9918	False	NA	-9	True	AATAAA	-8	NA	103336439	103318474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332772_103332978_103336204
ENSMUSG00000022124.16_3	chr14	-	5884	3	ISM	ENSMUSG00000022124.16	ENSMUST00000145693.8	3352	5	3456	5	205	-5	intron_retention	FALSE	canonical	3	170	junction_2	15	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATGTGGTTGTATTTTT	NA	False	NA	-9	True	AATAAA	-8	NA	103332979	103318474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_103320947_103326737_103326910_103329739
ENSMUSG00000022124.16_4	chr14	-	1547	1	ISM	ENSMUSG00000022124.16	ENSMUST00000022720.15	4309	5	16972	797	7235	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTTGTATTTTTATA	NA	False	NA	-6	True	AATAAA	-11	NA	103320018	103318471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_103318500_103320000
ENSMUSG00000022124.16_6	chr14	-	3338	5	NIC	ENSMUSG00000022124.16	novel	4309	5	NA	NA	-19	-3	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	68.9759922001851	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTGGTTGTATTTTTAT	9842	False	NA	-7	True	AATAAA	-10	NA	103336961	103318472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_103320947_103326737_103326910_103329739_103329863_103332772_103332978_103336597
ENSMUSG00000022124.16_9	chr14	-	3303	5	NIC	ENSMUSG00000022124.16	novel	4309	5	NA	NA	15	-2	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	68.4945253286713	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTTGTATTTTTATA	9828	False	NA	-6	True	AATAAA	-11	NA	103336975	103318471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336791
ENSMUSG00000022125.8_0	chr14	+	2306	4	FSM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	102	37	102	-37	multi-exon	FALSE	canonical	3	248	junction_2	4.96655480858378	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAACAAAAAAAATAA	NA	False	NA	-31	True	NA	NA	NA	103307753	103315027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_103307904_103309069_103309236_103310622_103310849_103313263
ENSMUSG00000022125.8_1	chr14	+	3693	3	NIC	ENSMUSG00000022125.8	novel	2445	4	NA	NA	111	-28	intron_retention	FALSE	canonical	3	258	junction_1	0.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATAAACTCAAGAA	NA	False	NA	-22	True	NA	NA	NA	103307762	103315036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_103307904_103309069_103310849_103313263
ENSMUSG00000022125.8_11	chr14	+	1002	1	ISM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	6362	49	4848	-49	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAACATAAACAAAA	NA	False	NA	-43	True	NA	NA	NA	103314013	103315015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_103314000_103315000
ENSMUSG00000022130.11_10	chr14	-	3663	11	NIC	ENSMUSG00000022130.11	novel	1682	12	NA	NA	1	0	intron_retention	FALSE	canonical	3	141	junction_7	15.395129099816	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGTCTTTTTATTTTG	251	False	NA	-2	True	ATTAAA	-22	NA	118370158	118349885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_118350570_118351724_118351823_118352528_118352588_118353490_118353657_118354381_118354426_118355148_118355209_118357051_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
ENSMUSG00000022130.11_3	chr14	-	1681	12	FSM	ENSMUSG00000022130.11	ENSMUST00000022727.10	1682	12	3	-2	0	0	multi-exon	FALSE	canonical	3	141	junction_8	15.4084875183551	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGTCTTTTTATTTTG	253	False	NA	-2	True	ATTAAA	-22	NA	118370156	118349885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_118350570_118351724_118351823_118352528_118352588_118353490_118353657_118354381_118354426_118355148_118355209_118357051_118357151_118359130_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
ENSMUSG00000022131.4_0	chr14	+	1875	9	FSM	ENSMUSG00000022131.4	ENSMUST00000022728.4	1875	9	-4	4	-4	-4	multi-exon	FALSE	canonical	3	145	junction_5	22.6463987203264	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACGAATTAGCATTTGTT	NA	False	NA	1	True	AATAAA	-20	NA	118374565	118400669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_118374753_118377148_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395308_118395467_118397404_118397597_118398968_118399047_118400000
ENSMUSG00000022131.4_1	chr14	+	1845	9	NNC	ENSMUSG00000022131.4	novel	1875	9	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	53.8678939629164	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGAATTAGCATTTGTTT	NA	False	NA	2	True	AATAAA	-21	NA	118374571	118400670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_118374753_118377173_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395308_118395467_118397404_118397597_118398968_118399047_118400000
ENSMUSG00000022136.9_18	chr14	+	2693	1	ISM	ENSMUSG00000022136.9	ENSMUST00000022734.9	5141	12	41028	1	41028	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCACTACTTGCTTCTTAT	NA	False	NA	14	True	AATAAA	-16	NA	119216415	119219108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_119216400_119219100
ENSMUSG00000022136.9_3	chr14	+	5147	12	FSM	ENSMUSG00000022136.9	ENSMUST00000022734.9	5141	12	-9	3	-9	-3	multi-exon	FALSE	canonical	3	143	junction_10	14.8340684499182	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCCACTACTTGCTTCTT	2320	False	NA	12	True	AATAAA	-14	NA	119175378	119219106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_119175583_119190520_119190632_119195279_119195405_119198197_119198273_119205400_119205554_119207511_119207694_119208094_119208215_119209774_119209881_119210104_119210226_119212543_119212677_119214121_119214271_119215438
ENSMUSG00000022139.18_0	chr14	+	4539	9	FSM	ENSMUSG00000022139.18	ENSMUST00000088419.13	4552	9	7	6	7	-4	multi-exon	FALSE	canonical	3	31	junction_3	5.41842920042331	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGATTGTGTTGCGGTC	6836	False	NA	1	True	AATAAA	-11	NA	120513087	120669103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_120513318_120562205_120562825_120616561_120616727_120622802_120623004_120626311_120626576_120633123_120633178_120633862_120634017_120642049_120642145_120666346
ENSMUSG00000022139.18_1	chr14	+	4449	8	NIC	ENSMUSG00000022139.18	novel	4552	9	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	1	1	junction_7	13.4952750612795	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAAGGATTGTGTTGCGG	6829	False	NA	-1	True	AATAAA	-9	NA	120513080	120669101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_120513318_120562205_120562825_120616561_120616727_120622802_120623004_120626311_120626576_120633123_120633178_120633862_120634017_120666346
ENSMUSG00000022139.18_12	chr14	+	2942	3	ISM	ENSMUSG00000022139.18	ENSMUST00000227594.2	2334	9	90063	-2065	28	-4	3prime_fragment	FALSE	canonical	3	32	junction_1	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGATTGTGTTGCGGTC	NA	False	NA	1	True	AATAAA	-11	NA	120633926	120669103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_120634017_120642049_120642145_120666346
ENSMUSG00000022139.18_22	chr14	+	1902	1	ISM	ENSMUSG00000022139.18	ENSMUST00000088419.13	4552	9	154121	6	33303	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGATTGTGTTGCGGTC	NA	False	NA	1	True	AATAAA	-11	NA	120667201	120669103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_120667200_120669100
ENSMUSG00000022139.18_9	chr14	+	4100	8	ISM	ENSMUSG00000022139.18	ENSMUST00000227594.2	2334	9	18551	-2065	18547	-4	3prime_fragment	FALSE	canonical	3	31	junction_2	2.32992949004287	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGATTGTGTTGCGGTC	NA	False	NA	1	True	AATAAA	-11	NA	120562414	120669103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_120562825_120616561_120616727_120622802_120623004_120626311_120626576_120633123_120633178_120633862_120634017_120642049_120642145_120666346
ENSMUSG00000022141.8_0	chr15	-	9446	47	FSM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	-30	7	-30	-7	multi-exon	TRUE	canonical	2	7	junction_43	23.7522658356028	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTACTTGTCTGTTTCC	NA	False	NA	-7	True	AATAAA	-15	NA	8473977	8320107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_8321075_8321620_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482_8356627_8357228_8357362_8357875_8357959_8359661_8359801_8361872_8361974_8362491_8362573_8363064_8363217_8364333_8364566_8364667_8364755_8366337_8366442_8367992_8368083_8368164_8368237_8368358_8368557_8372958_8373142_8379687_8381296_8388123_8388751_8390399_8390497_8391201_8391363_8395275_8395428_8396113_8396214_8398944_8399073_8401514_8401681_8403443_8403587_8473608
ENSMUSG00000022141.8_1	chr15	-	4058	18	NIC	ENSMUSG00000022141.8	novel	9423	47	NA	NA	120988	-4	intron_retention	FALSE	canonical	3	42	junction_16	15.1504565007108	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACTTGTCTGTTTCCATT	8800	False	NA	-4	True	AATAAA	-18	NA	8352959	8320104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892
ENSMUSG00000022141.8_10	chr15	-	4584	27	ISM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	114164	1	114164	-1	3prime_fragment	FALSE	canonical	3	23	junction_25	18.4160095646159	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTGTTTCCATTTGA	1976	False	NA	-1	True	AATAAA	-21	NA	8359783	8320101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_8321075_8321620_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482_8356627_8357228_8357362_8357875_8357959_8359661
ENSMUSG00000022141.8_20	chr15	-	4793	23	NIC	ENSMUSG00000022141.8	novel	9423	47	NA	NA	117320	-1	intron_retention	FALSE	canonical	3	34	junction_21	17.0061364714608	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTGTTTCCATTTGA	5132	False	NA	-1	True	AATAAA	-21	NA	8356627	8320101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482
ENSMUSG00000022141.8_34	chr15	-	4483	24	ISM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	117390	-305	117390	305	3prime_fragment	FALSE	canonical	3	34	junction_22	17.234071849513	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTATTCCTTGTATGCTT	5202	False	NA	NA	False	TATAAA	-11	NA	8356557	8319795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_8321075_8321620_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482
ENSMUSG00000022141.8_36	chr15	-	9843	46	NIC	ENSMUSG00000022141.8	novel	9423	47	NA	NA	-149	-275	intron_retention	FALSE	canonical	2	7	junction_42	24.0098333764612	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAACCTAGCAGCGGATGG	NA	False	NA	-8	True	AATAAA	-13	NA	8474096	8320375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482_8356627_8357228_8357362_8357875_8357959_8359661_8359801_8361872_8361974_8362491_8362573_8363064_8363217_8364333_8364566_8364667_8364755_8366337_8366442_8367992_8368083_8368164_8368237_8368358_8368557_8372958_8373142_8379687_8381296_8388123_8388751_8390399_8390497_8391201_8391363_8395275_8395428_8396113_8396214_8398944_8399073_8401514_8401681_8403443_8403587_8473608
ENSMUSG00000022141.8_37	chr15	-	3570	19	ISM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	120933	1	120933	-1	3prime_fragment	FALSE	canonical	3	42	junction_1	16.0065572982828	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTGTTTCCATTTGA	8745	False	NA	-1	True	AATAAA	-21	NA	8353014	8320101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_8321075_8321620_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892
ENSMUSG00000022141.8_42	chr15	-	6113	38	ISM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	93775	274	93775	-274	3prime_fragment	FALSE	canonical	3	23	junction_25	19.169803683532	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCTAGCAGCGGATGGC	6907	False	NA	-7	True	AATAAA	-14	NA	8380172	8320374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_8321075_8321620_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482_8356627_8357228_8357362_8357875_8357959_8359661_8359801_8361872_8361974_8362491_8362573_8363064_8363217_8364333_8364566_8364667_8364755_8366337_8366442_8367992_8368083_8368164_8368237_8368358_8368557_8372958_8373142_8379687
ENSMUSG00000022142.9_0	chr15	+	4334	35	FSM	ENSMUSG00000022142.9	ENSMUST00000163765.3	7832	35	78	3420	15	791	multi-exon	TRUE	canonical	3	205	junction_4	36.1069753346922	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCAGGTGTTGTATATCT	NA	False	NA	15	True	AATAAA	-18	NA	8138834	8187311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_8139087_8141766_8141905_8143127_8143225_8144962_8145034_8145913_8146007_8146717_8146885_8147465_8147572_8148662_8148737_8149917_8150010_8150946_8151045_8151539_8151693_8153706_8153808_8157891_8158063_8159608_8159720_8160945_8161041_8163558_8163648_8164146_8164210_8165241_8165390_8166116_8166184_8167337_8167454_8169334_8169433_8170712_8170844_8172451_8172644_8173534_8173674_8174971_8175108_8176626_8176781_8176981_8177087_8177780_8177936_8180241_8180372_8181196_8181311_8182599_8182721_8183123_8183235_8184399_8184537_8186169_8186277_8187109
ENSMUSG00000022142.9_74	chr15	+	1700	1	ISM	ENSMUSG00000022142.9	ENSMUST00000163765.3	7832	35	48885	1390	4816	1033	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTAGTTGTGTTTCCATT	NA	False	NA	10	True	AATGAA	-20	NA	8187641	8189341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_8187600_8189300
ENSMUSG00000022150.17_0	chr15	+	3539	15	FSM	ENSMUSG00000022150.17	ENSMUST00000080880.12	4663	15	22	1102	22	-25	multi-exon	FALSE	canonical	2	3	junction_9	4.17230910471721	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAATAAAGTATAAT	8136	False	NA	NA	False	AATAAA	-23	NA	6416100	6469084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_6416414_6446286_6446476_6447710_6447851_6449219_6449319_6451715_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6454115_6454179_6458776_6459431_6460434_6460589_6464645_6465282_6465871_6465979_6466463_6466532_6468262
ENSMUSG00000022150.17_1	chr15	+	2764	13	FSM	ENSMUSG00000022150.17	ENSMUST00000161812.8	2710	13	-99	45	-70	-25	multi-exon	FALSE	canonical	0	0	junction_8	4.76678321535836	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAATAAAGTATAAT	8194	False	NA	NA	False	AATAAA	-23	NA	6416158	6469084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_6416414_6446286_6446476_6447710_6447851_6449219_6449319_6451715_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6460434_6460589_6464645_6465282_6465871_6465979_6466463_6466532_6468262
ENSMUSG00000022150.17_3	chr15	+	2871	14	FSM	ENSMUSG00000022150.17	ENSMUST00000110663.9	2754	14	-145	28	33	-28	multi-exon	FALSE	canonical	3	5	junction_9	3.86610211480894	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACTAAAAAATAATAAAGTAT	8147	False	NA	NA	False	AATAAA	-20	NA	6416111	6469081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_6416414_6446286_6446476_6447710_6447851_6449219_6449319_6451715_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6454115_6454179_6460434_6460589_6464645_6465282_6465871_6465979_6466463_6466532_6468262
ENSMUSG00000022150.17_5	chr15	+	3406	14	FSM	ENSMUSG00000022150.17	ENSMUST00000110664.9	4450	14	-31	1075	-31	2	multi-exon	FALSE	canonical	0	0	junction_8	4.6651166769404	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGGTGATCTCTCCCAG	8233	False	NA	NA	False	AATAAA	-15	NA	6416197	6469111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_6416414_6446286_6446476_6447710_6447851_6449219_6449319_6451715_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6458776_6459431_6460434_6460589_6464645_6465282_6465871_6465979_6466463_6466532_6468262
ENSMUSG00000022151.17_0	chr15	+	1649	5	FSM	ENSMUSG00000022151.17	ENSMUST00000118193.8	1671	5	16	6	16	-6	multi-exon	FALSE	canonical	3	51	junction_1	36.9323706252388	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAAGTTTCTTTCCTTTT	NA	False	NA	25	True	AGTAAA	-25	NA	5215021	5247811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_5215054_5219062_5219285_5237849_5237932_5241479_5241612_5246630
ENSMUSG00000022151.17_1	chr15	+	1655	5	FSM	ENSMUSG00000022151.17	ENSMUST00000022751.15	1832	5	162	15	-5	-15	multi-exon	FALSE	canonical	3	41	junction_1	41.1430431543414	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCTGGTCAAAAAAGTTTC	NA	False	NA	16	True	AGTAAA	-16	NA	5215202	5247802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_5215250_5219062_5219285_5237849_5237932_5241479_5241612_5246630
ENSMUSG00000022151.17_5	chr15	+	3591	4	ISM	ENSMUSG00000022151.17	ENSMUST00000022751.15	1832	5	4021	-1967	2227	1967	3prime_fragment	FALSE	canonical	3	119	junction_1	10.4986771653491	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGGATTTGTGTTGTTC	NA	False	NA	NA	False	ATTAAA	-10	NA	5219061	5249784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_5219285_5237849_5237932_5241479_5241612_5246630
ENSMUSG00000022151.17_6	chr15	+	1314	2	ISM	ENSMUSG00000022151.17	ENSMUST00000081640.12	1583	4	26271	6	24644	-6	3prime_fragment	FALSE	canonical	3	143	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAAGTTTCTTTCCTTTT	3960	False	NA	25	True	AGTAAA	-25	NA	5241478	5247811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_5241612_5246630
ENSMUSG00000022151.17_7	chr15	+	2706	1	Genic_Genomic	ENSMUSG00000022151.17	novel	NA	NA	NA	NA	30244	1967	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGGATTTGTGTTGTTC	4967	False	NA	NA	False	ATTAAA	-10	NA	5247078	5249784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_5247100_5249800
ENSMUSG00000022159.17_1	chr14	-	2652	8	FSM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	242	12	-5	0	multi-exon	FALSE	canonical	3	132	junction_5	9.75202752335772	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTACTTTTATTTCATGT	NA	False	NA	-11	True	ATTAAA	-15	NA	52516760	52499227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
ENSMUSG00000022159.17_2	chr14	-	2487	4	ISM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	10645	12	206	0	3prime_fragment	FALSE	canonical	3	133	junction_2	4.18993502999218	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTACTTTTATTTCATGT	NA	False	NA	-11	True	ATTAAA	-15	NA	52506357	52499227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098
ENSMUSG00000022159.17_3	chr14	-	2588	7	ISM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	516	12	212	0	3prime_fragment	FALSE	canonical	3	132	junction_5	7.58653778449403	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTACTTTTATTTCATGT	NA	False	NA	-11	True	ATTAAA	-15	NA	52516486	52499227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370
ENSMUSG00000022159.17_7	chr14	-	1906	1	ISM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	15873	8	5434	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTATTTCATGTGTCA	NA	False	NA	-7	True	ATTAAA	-19	NA	52501129	52499223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52499200_52501100
ENSMUSG00000022160.19_12	chr14	-	2313	10	ISM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	23	669	2	-3	5prime_fragment	FALSE	canonical	3	126	junction_6	20.5666636652858	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGACACTGCCATATTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	52542562	52532966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
ENSMUSG00000022160.19_2	chr14	-	1979	11	NIC	ENSMUSG00000022160.19	novel	2025	11	NA	NA	6	0	intron_retention	FALSE	canonical	3	18	junction_10	47.2699693251434	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTCTGAAGTGAAATTAT	NA	False	NA	-32	True	AATAAA	-23	NA	52542550	52532313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542339
ENSMUSG00000022160.19_3	chr14	-	1995	11	FSM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	13	17	-8	-1	multi-exon	FALSE	canonical	3	126	junction_7	19.5910693939866	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTCTGAAGTGAAATTA	NA	False	NA	-33	True	AATAAA	-22	NA	52542572	52532314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
ENSMUSG00000022160.19_5	chr14	-	1799	10	NIC	ENSMUSG00000022160.19	novel	2025	11	NA	NA	5	0	intron_retention	FALSE	canonical	3	11	junction_7	51.3181795814656	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTCTGAAGTGAAATTAT	NA	False	NA	-32	True	AATAAA	-23	NA	52542551	52532313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52537157_52537563_52537640_52537859_52542344
ENSMUSG00000022174.9_0	chr14	-	642	3	FSM	ENSMUSG00000022174.9	ENSMUST00000022781.8	878	3	228	8	38	-8	multi-exon	FALSE	canonical	3	1530	junction_1	8	429	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGCCATTCGTTCCTTCA	NA	False	NA	-19	True	ATTAAA	-16	NA	54491333	54472943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54473171_54480155_54480326_54491088
ENSMUSG00000022175.10_0	chr14	+	2972	7	FSM	ENSMUSG00000022175.10	ENSMUST00000022782.10	4228	7	38	1218	38	536	multi-exon	TRUE	canonical	3	169	junction_1	20.8306664959782	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTTGGTAAATCAGCTG	NA	False	NA	3	True	AATAAA	-16	NA	54701631	54707736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_54702069_54702360_54702406_54703030_54703167_54704916_54705108_54705220_54706239_54706492_54706623_54706721
ENSMUSG00000022175.10_13	chr14	+	1682	3	ISM	ENSMUSG00000022175.10	ENSMUST00000022782.10	4228	7	4108	1218	-568	536	3prime_fragment	FALSE	canonical	3	186	junction_1	24	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTTGGTAAATCAGCTG	NA	False	NA	3	True	AATAAA	-16	NA	54705701	54707736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_54706239_54706492_54706623_54706721
ENSMUSG00000022176.12_3	chr14	+	1789	5	FSM	ENSMUSG00000022176.12	ENSMUST00000164766.8	1884	5	79	16	-61	-16	multi-exon	FALSE	canonical	1	2	junction_4	2.29128784747792	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTCTATTGCACTA	NA	False	NA	NA	False	AATAAA	-1	NA	54713635	54717872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_54713832_54714927_54715273_54715484_54715559_54716410_54716619_54716906
ENSMUSG00000022177.10_0	chr14	-	1543	10	FSM	ENSMUSG00000022177.10	ENSMUST00000022784.9	1587	10	42	2	42	-2	multi-exon	FALSE	canonical	3	401	junction_5	37.1423687391577	402	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTTTTAGTCATTTTTC	NA	False	NA	-3	True	AATAAA	-18	NA	54791776	54779243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
ENSMUSG00000022178.12_0	chr14	-	3367	8	FSM	ENSMUSG00000022178.12	ENSMUST00000054487.10	3397	8	25	5	25	-2	multi-exon	TRUE	canonical	3	297	junction_5	54.835933399886	774	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTTTGTGAGTGTATT	NA	False	NA	-11	True	AGTAAA	-13	NA	54814990	54804933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54806514_54806932_54807002_54807701_54807754_54807833_54807965_54809057_54809121_54809222_54809291_54810848_54810951_54813688
ENSMUSG00000022179.6_0	chr14	-	1962	6	ISM	ENSMUSG00000022179.6	ENSMUST00000022786.6	2670	7	10559	0	-9935	0	3prime_fragment	FALSE	canonical	3	21	junction_1	3.96988664825584	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTGTTGGGCTTAGT	NA	False	NA	-1	True	NA	NA	NA	54832891	54821119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_54822164_54822435_54822549_54823108_54823213_54823392_54823455_54828578_54828897_54832570
ENSMUSG00000022179.6_1	chr14	-	2596	7	FSM	ENSMUSG00000022179.6	ENSMUST00000022786.6	2670	7	74	0	74	0	multi-exon	FALSE	canonical	3	19	junction_6	4.10960933531265	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTGTTGGGCTTAGT	NA	False	NA	-1	True	NA	NA	NA	54843376	54821119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54822164_54822435_54822549_54823108_54823213_54823392_54823455_54828578_54828897_54832570_54833409_54843259
ENSMUSG00000022180.8_0	chr14	-	4064	11	FSM	ENSMUSG00000022180.8	ENSMUST00000022787.8	4084	11	13	7	13	-7	multi-exon	FALSE	canonical	0	0	junction_10	10.5375518978556	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGGAGTGATGGAGTTAA	NA	False	NA	NA	False	AATAAA	-12	NA	55019374	54959672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54961709_54962194_54962373_54964191_54964342_54966789_54966887_54970636_54970741_54972510_54972635_54973180_54973335_54974996_54975123_54995895_54996048_54996997_54997203_55018636
ENSMUSG00000022180.8_1	chr14	-	3035	9	NNC	ENSMUSG00000022180.8	novel	4084	11	NA	NA	27182	-13	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_7	6.32331993497087	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAGATGGAGTGATGG	2344	False	NA	NA	False	AATAAA	-6	NA	54992205	54959678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_54961709_54962194_54962373_54964191_54964342_54966789_54966887_54970636_54970741_54972510_54972635_54973180_54973335_54974996_54975123_54992133
ENSMUSG00000022180.8_4	chr14	-	2457	4	ISM	ENSMUSG00000022180.8	ENSMUST00000022787.8	4084	11	52499	13	52499	-13	3prime_fragment	FALSE	canonical	3	25	junction_1	2.49443825784929	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAGATGGAGTGATGG	9187	False	NA	NA	False	AATAAA	-6	NA	54966888	54959678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_54961709_54962194_54962373_54964191_54964342_54966789
ENSMUSG00000022180.8_5	chr14	-	3254	10	ISM	ENSMUSG00000022180.8	ENSMUST00000022787.8	4084	11	22251	13	22251	-13	3prime_fragment	FALSE	canonical	1	1	junction_9	9.66091783079296	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAGATGGAGTGATGG	NA	False	NA	NA	False	AATAAA	-6	NA	54997136	54959678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_54961709_54962194_54962373_54964191_54964342_54966789_54966887_54970636_54970741_54972510_54972635_54973180_54973335_54974996_54975123_54995895_54996048_54996997
ENSMUSG00000022180.8_9	chr14	-	2493	5	NNC	ENSMUSG00000022180.8	novel	4084	11	NA	NA	52346	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	12.1732288239399	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAGATGGAGTGATGG	9034	False	NA	NA	False	AATAAA	-6	NA	54967041	54959678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_54961709_54962194_54962373_54964191_54964342_54966789_54966887_54967003
ENSMUSG00000022184.9_0	chr15	-	1811	11	Fusion	ENSMUSG00000041935.11_ENSMUSG00000022184.9	novel	1565	7	NA	NA	25	-28	multi-exon	FALSE	canonical	1	1	junction_6	103.370982388676	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCAAAACAAAATTTTGTGG	2205	False	NA	NA	False	NA	NA	NA	4025201	3994954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr15_-_3995275_3998388_3998565_4000818_4000995_4001110_4001187_4005238_4005460_4007243_4007480_4018072_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4025096
ENSMUSG00000022184.9_1	chr15	-	1428	7	FSM	ENSMUSG00000022184.9	ENSMUST00000022791.9	1565	7	110	27	110	-27	multi-exon	FALSE	canonical	3	8	junction_6	2.40947204913349	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAACAAAATTTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	4008945	3994953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_3995275_3998388_3998565_4000818_4000995_4001110_4001187_4005238_4005460_4007243_4007480_4008723
ENSMUSG00000022185.20_0	chr14	-	2426	12	FSM	ENSMUSG00000022185.20	ENSMUST00000126166.8	2369	12	-64	7	1	-1	multi-exon	FALSE	canonical	3	94	junction_11	105.5899600787	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATTTGAGTGCCTTT	3759	False	NA	-7	True	AATAAA	-18	NA	54891137	54879624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890991
ENSMUSG00000022185.20_11	chr14	-	4731	19	FSM	ENSMUSG00000022185.20	ENSMUST00000022793.15	4735	19	-3	7	-3	-1	multi-exon	FALSE	canonical	3	51	junction_16	154.301732625911	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATTTGAGTGCCTTT	2627	False	NA	-7	True	AATAAA	-18	NA	54924391	54879624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
ENSMUSG00000022185.20_13	chr14	-	4612	18	NIC	ENSMUSG00000022185.20	novel	4048	18	NA	NA	-4	2	intron_retention	FALSE	canonical	3	59	junction_15	155.599365775564	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATTTGAGTGCCTTTCCT	2626	False	NA	-4	True	AATAAA	-21	NA	54924392	54879621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884291_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916697_54916810_54922467_54922534_54923925
ENSMUSG00000022185.20_15	chr14	-	2532	13	NIC	ENSMUSG00000022185.20	novel	2494	13	NA	NA	1	1	intron_retention	FALSE	canonical	3	25	junction_12	135.990706381805	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATTTGAGTGCCTTTCC	3759	False	NA	-5	True	AATAAA	-20	NA	54891137	54879622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890775_54890991
ENSMUSG00000022185.20_19	chr14	-	613	1	ISM	ENSMUSG00000022185.20	ENSMUST00000126166.8	2369	12	10837	6	1431	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATTTGAGTGCCTTTC	NA	False	NA	-6	True	AATAAA	-19	NA	54880236	54879623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_54879600_54880200
ENSMUSG00000022185.20_22	chr14	-	4301	18	NIC	ENSMUSG00000022185.20	novel	4383	19	NA	NA	-27	-1	intron_retention	FALSE	canonical	3	59	junction_15	155.382305619572	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATTTGAGTGCCTTT	2901	False	NA	-7	True	AATAAA	-18	NA	54924117	54879624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884025_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916697_54916810_54922467_54922534_54923925
ENSMUSG00000022185.20_24	chr14	-	4612	18	FSM	ENSMUSG00000022185.20	ENSMUST00000111484.9	4048	18	-4	-560	-4	-1	multi-exon	FALSE	canonical	3	59	junction_15	148.725217469731	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATTTGAGTGCCTTT	2626	False	NA	-7	True	AATAAA	-18	NA	54924392	54879624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916697_54916810_54922467_54922534_54923925
ENSMUSG00000022185.20_28	chr14	-	2281	11	ISM	ENSMUSG00000022185.20	ENSMUST00000126166.8	2369	12	1757	7	1380	-1	3prime_fragment	FALSE	canonical	3	314	junction_9	54.4140606828786	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATTTGAGTGCCTTT	5580	False	NA	-7	True	AATAAA	-18	NA	54889316	54879624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173
ENSMUSG00000022185.20_3	chr14	-	2491	13	FSM	ENSMUSG00000022185.20	ENSMUST00000150371.8	2494	13	2	1	1	-1	multi-exon	FALSE	canonical	3	46	junction_12	131.761437412047	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATTTGAGTGCCTTT	3759	False	NA	-7	True	AATAAA	-18	NA	54891137	54879624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890736_54890991
ENSMUSG00000022185.20_38	chr14	-	2385	12	FSM	ENSMUSG00000022185.20	ENSMUST00000167015.8	1746	12	-79	-560	-79	-1	multi-exon	FALSE	canonical	3	134	junction_11	95.7414735214897	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATTTGAGTGCCTTT	4121	False	NA	-7	True	AATAAA	-18	NA	54890775	54879624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670
ENSMUSG00000022185.20_4	chr14	-	2298	12	NIC	ENSMUSG00000022185.20	novel	2373	13	NA	NA	0	1	intron_retention	FALSE	canonical	2	44	junction_11	118.32012885626	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATTTGAGTGCCTTTCC	3744	False	NA	-5	True	AATAAA	-20	NA	54891152	54879622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54891136
ENSMUSG00000022185.20_42	chr14	-	1142	3	FSM	ENSMUSG00000022185.20	ENSMUST00000152773.2	844	3	436	-734	110	-1	multi-exon	FALSE	canonical	3	362	junction_2	64	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATTTGAGTGCCTTT	NA	False	NA	-7	True	AATAAA	-18	NA	54881557	54879624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54880506_54881180_54881282_54881397
ENSMUSG00000022185.20_49	chr14	-	4731	19	NIC	ENSMUSG00000022185.20	novel	4735	19	NA	NA	-6	-1	intron_retention	FALSE	canonical	3	51	junction_16	159.626386707628	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATTTGAGTGCCTTT	2624	False	NA	-7	True	AATAAA	-18	NA	54924394	54879624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884291_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
ENSMUSG00000022185.20_58	chr14	-	2294	12	NIC	ENSMUSG00000022185.20	novel	2365	13	NA	NA	-1	-1	intron_retention	FALSE	canonical	2	44	junction_11	142.865538124038	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATTTGAGTGCCTTT	3743	False	NA	-7	True	AATAAA	-18	NA	54891153	54879624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884291_54885544_54885588_54889173_54889316_54891136
ENSMUSG00000022186.15_1	chr15	+	3228	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	294	5	-7	-5	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	447	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACGAATGTGTGTGTCC	NA	False	NA	11	True	AATAAA	-15	NA	4056158	4184821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ENSMUSG00000022191.17_0	chr15	+	4457	35	FSM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	14	48	-13	-47	multi-exon	FALSE	canonical	3	495	junction_3	95.4793814587056	856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGGTTGTTGTCTTA	67	False	NA	-18	True	AATAAA	-10	NA	12824962	12935329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
ENSMUSG00000022191.17_81	chr15	+	4480	32	ISM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	8712	48	-3775	-47	3prime_fragment	FALSE	canonical	3	538	junction_3	90.1454368888601	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGGTTGTTGTCTTA	48	False	NA	-18	True	AATAAA	-10	NA	12833660	12935329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
ENSMUSG00000022193.8_1	chr14	-	882	3	FSM	ENSMUSG00000022193.8	ENSMUST00000022803.6	899	3	16	1	2	1	multi-exon	FALSE	canonical	3	1854	junction_2	4.5	881	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGGAGTCCACAGTTAT	8640	False	NA	-18	True	AATAAA	-17	NA	54855463	54851576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54851939_54853971_54854279_54855250
ENSMUSG00000022194.16_1	chr14	+	1777	7	FSM	ENSMUSG00000022194.16	ENSMUST00000022808.14	1030	7	0	-747	0	747	multi-exon	FALSE	canonical	3	2071	junction_6	205.041797906887	1701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAAATTGGCCCTTTGG	NA	False	NA	11	True	AATAAA	-10	NA	55131604	55136373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
ENSMUSG00000022194.16_3	chr14	+	2525	6	FSM	ENSMUSG00000022194.16	ENSMUST00000116476.9	1761	6	-2	-762	-2	749	multi-exon	FALSE	canonical	3	2245	junction_1	149.688209288507	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGCCCTTTGGAT	NA	False	NA	13	True	AATAAA	-12	NA	55131602	55136375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577
ENSMUSG00000022194.16_6	chr14	+	2604	5	FSM	ENSMUSG00000022194.16	ENSMUST00000150975.8	1775	5	-7	-822	0	749	multi-exon	FALSE	canonical	3	2245	junction_1	156.472641378613	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGCCCTTTGGAT	NA	False	NA	13	True	AATAAA	-12	NA	55131604	55136375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408
ENSMUSG00000022195.8_2	chr15	-	3695	9	FSM	ENSMUSG00000022195.8	ENSMUST00000057256.5	3966	9	30	241	-8	228	multi-exon	FALSE	canonical	3	264	junction_8	28.8809517675578	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACATTTTTAATTTTTT	NA	False	NA	-12	True	AATAAA	-11	NA	12824705	12808503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
ENSMUSG00000022195.8_3	chr15	-	3551	8	FSM	ENSMUSG00000022195.8	ENSMUST00000227299.2	3206	8	11	-356	-8	230	multi-exon	FALSE	canonical	3	60	junction_7	97.0238767163074	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATTTTTAATTTTTTAT	NA	False	NA	-10	True	AATAAA	-13	NA	12824705	12808501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12824552
ENSMUSG00000022195.8_4	chr15	-	2136	1	ISM	ENSMUSG00000022195.8	ENSMUST00000057256.5	3966	9	14096	241	7347	228	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACATTTTTAATTTTTT	3073	False	NA	-12	True	AATAAA	-11	NA	12810639	12808503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_12808500_12810600
ENSMUSG00000022197.17_0	chr15	-	1719	1	ISM	ENSMUSG00000022197.17	ENSMUST00000075317.12	10756	24	231127	0	50951	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTCATTGTTGTGCG	NA	False	NA	NA	False	AATAAA	-18	NA	12361515	12359796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_12359800_12361500
ENSMUSG00000022197.17_1	chr15	-	5977	6	ISM	ENSMUSG00000022197.17	ENSMUST00000075317.12	10756	24	217288	0	37112	0	3prime_fragment	TRUE	canonical	0	0	junction_5	1.35646599662505	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTCATTGTTGTGCG	NA	False	NA	NA	False	AATAAA	-18	NA	12375354	12359796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_12362326_12365713_12365849_12367895_12368167_12368704_12368807_12371674_12371793_12372532
ENSMUSG00000022197.17_3	chr15	-	2706	3	ISM	ENSMUSG00000022197.17	ENSMUST00000075317.12	10756	24	224699	6	44523	-6	3prime_fragment	FALSE	canonical	1	2	junction_2	1	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGCTTTGTCTCATTGT	NA	False	NA	NA	False	AATAAA	-12	NA	12367943	12359802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_12362326_12365713_12365849_12367895
ENSMUSG00000022199.13_10	chr14	-	2157	9	NIC	ENSMUSG00000022199.13	novel	2340	10	NA	NA	7	-6	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	2.93417364857638	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATGAGCATATCATAG	NA	False	NA	-27	True	AATAAA	-11	NA	55150544	55144213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_55144817_55144975_55145088_55145342_55145561_55145717_55145824_55145958_55146105_55147127_55147283_55149505_55149610_55149698_55150191_55150323
ENSMUSG00000022199.13_4	chr14	-	2336	8	NIC	ENSMUSG00000022199.13	novel	2348	10	NA	NA	2	-1	intron_retention	FALSE	canonical	1	1	junction_4	3.06394436993246	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCATAGCCTGGACTTCC	NA	False	NA	-16	True	AATAAA	-22	NA	55150558	55144202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_55144817_55144975_55145088_55145342_55145824_55145958_55146105_55147127_55147283_55149505_55149610_55149698_55150188_55150323
ENSMUSG00000022199.13_5	chr14	-	2339	8	NIC	ENSMUSG00000022199.13	novel	2340	10	NA	NA	2	-1	intron_retention	FALSE	canonical	1	1	junction_4	3.10365156891435	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCATAGCCTGGACTTCC	NA	False	NA	-16	True	AATAAA	-22	NA	55150558	55144202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_55144817_55144975_55145088_55145342_55145824_55145958_55146105_55147127_55147283_55149505_55149610_55149698_55150191_55150323
ENSMUSG00000022200.9_0	chr15	+	2649	4	FSM	ENSMUSG00000022200.9	ENSMUST00000059680.7	2652	4	3	0	3	0	multi-exon	TRUE	canonical	3	392	junction_2	32.4174164437712	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAGAGCAAGCATGCCAT	-2	True	NA	18	True	AATAAA	-26	NA	12321538	12351351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_12322043_12339713_12339846_12343122_12343238_12349453
ENSMUSG00000022200.9_12	chr15	+	1242	1	ISM	ENSMUSG00000022200.9	ENSMUST00000059680.7	2652	4	28574	0	28389	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAGAGCAAGCATGCCAT	24	False	NA	18	True	AATAAA	-26	NA	12350109	12351351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_12350100_12351400
ENSMUSG00000022201.17_3	chr15	+	4599	20	FSM	ENSMUSG00000022201.17	ENSMUST00000122941.8	4850	20	11	240	-9	-240	multi-exon	TRUE	canonical	1	184	junction_8	102.146464828737	1043	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAATGACTTACTTGTGT	51	False	NA	12	True	AATAAA	-12	NA	12117927	12185529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
ENSMUSG00000022201.17_6	chr15	+	4623	21	NIC	ENSMUSG00000022201.17	novel	4850	20	NA	NA	-9	-240	combination_of_known_splicesites	FALSE	canonical	1	46	junction_3	185.137489450408	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAATGACTTACTTGTGT	51	False	NA	12	True	AATAAA	-12	NA	12117927	12185529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_12118034_12118324_12118425_12135352_12135377_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
ENSMUSG00000022203.8_0	chr14	-	3431	6	FSM	ENSMUSG00000022203.8	ENSMUST00000022813.8	2705	6	-828	102	-616	-4	multi-exon	FALSE	canonical	3	20	junction_2	3.32264954516723	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGACTCTGCTTCTTGA	NA	False	NA	NA	False	AATAAA	-14	NA	55164199	55154093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55154990_55156785_55156876_55157151_55157872_55157961_55158103_55158359_55158639_55162894
ENSMUSG00000022203.8_4	chr14	-	3172	7	NIC	ENSMUSG00000022203.8	novel	2705	6	NA	NA	-437	2	combination_of_known_junctions	TRUE	canonical	1	1	junction_5	9.58586922969894	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGCTTCTTGAAAGCTT	NA	False	NA	NA	False	AATAAA	-20	NA	55164020	55154087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_55154990_55156785_55156876_55157151_55157872_55157961_55158103_55158359_55158472_55158557_55158639_55162894
ENSMUSG00000022204.10_0	chr14	+	1087	11	FSM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	107	6	107	-6	multi-exon	FALSE	canonical	3	1001	junction_1	176.552230232303	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAAGACATTTTTTGCC	NA	False	NA	12	True	AATAAA	-17	NA	55253017	55261588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022204.10_21	chr14	+	1060	10	ISM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	714	6	714	-6	3prime_fragment	FALSE	canonical	3	1280	junction_6	108.708580873616	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAAGACATTTTTTGCC	NA	False	NA	12	True	AATAAA	-17	NA	55253624	55261588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022205.16_0	chr15	-	678	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	55	2639	9	63	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	1908	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGTGGTACCCTTTTTT	864	False	NA	76	True	AATAAA	-19	NA	11996089	11984063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
ENSMUSG00000022206.8_0	chr15	-	2410	8	FSM	ENSMUSG00000022206.8	ENSMUST00000066529.5	6892	8	-6	4488	-6	-1	multi-exon	FALSE	canonical	3	12	junction_2	7.24498419034627	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGGAGGAGGTGTGTGACA	1474	False	NA	NA	False	ATTAAA	-21	NA	11905731	11844469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_11845375_11846383_11846472_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11904971
ENSMUSG00000022206.8_2	chr15	-	3545	1	ISM	ENSMUSG00000022206.8	ENSMUST00000066529.5	6892	8	62192	7	47541	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAACAGTTTCCTGTCT	NA	False	NA	-8	True	ATTAAA	-11	NA	11843533	11839988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_11840000_11843500
ENSMUSG00000022206.8_3	chr15	-	2428	8	FSM	ENSMUSG00000022206.8	ENSMUST00000228603.2	2437	8	7	2	7	-2	multi-exon	FALSE	canonical	3	16	junction_2	6.17433793856409	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGGAGGAGGTGTGTGAC	1452	False	NA	NA	False	ATTAAA	-20	NA	11905753	11844470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_11845375_11846383_11846469_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11904971
ENSMUSG00000022206.8_6	chr15	-	1810	8	ISM	ENSMUSG00000022206.8	ENSMUST00000228489.2	1969	9	512	0	426	0	3prime_fragment	FALSE	canonical	1	1	junction_7	10.9897911810954	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGAGGAGGTGTGTGACAA	344	False	NA	NA	False	ATTAAA	-22	NA	11906861	11844468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_11845375_11846383_11846469_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11906699
ENSMUSG00000022206.8_7	chr15	-	6363	8	NIC	ENSMUSG00000022206.8	novel	1969	9	NA	NA	-16	-5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	10.9897911810954	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACAGTTTCCTGTCTAT	NA	False	NA	-6	True	ATTAAA	-13	NA	11907389	11839986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_11845375_11846383_11846469_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11907156
ENSMUSG00000022208.13_0	chr14	-	2517	4	ISM	ENSMUSG00000022208.13	ENSMUST00000124493.2	3200	5	1836	-436	1836	-15	3prime_fragment	FALSE	canonical	0	0	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCCAAAAAGGGGGGGAC	NA	False	NA	-14	True	NA	NA	NA	55351173	55344297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55345853_55346742_55347276_55347533_55347653_55350863
ENSMUSG00000022210.8_0	chr14	+	1244	8	FSM	ENSMUSG00000022210.8	ENSMUST00000022821.8	1392	8	145	3	-3	-1	multi-exon	FALSE	canonical	3	56	junction_3	11.5987332172483	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCAGTGCGTGTTTATTT	NA	False	NA	8	True	AATAAA	-23	NA	55716359	55727794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716_55724769_55725040_55725176_55725616_55725673_55727275
ENSMUSG00000022210.8_2	chr14	+	1335	7	NIC	ENSMUSG00000022210.8	novel	1392	8	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	56	junction_3	11.6285090283416	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAATCAGTGCGTGTT	NA	False	NA	3	True	AATAAA	-18	NA	55716359	55727789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724769_55725040_55725176_55725616_55725673_55727275
ENSMUSG00000022210.8_3	chr14	+	887	4	ISM	ENSMUSG00000022210.8	ENSMUST00000226168.2	828	5	31	6	0	0	intron_retention	FALSE	canonical	3	56	junction_3	6.12825877028341	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCCTAGTCTCTGGG	NA	False	NA	NA	False	AATAAA	-15	NA	55716362	55725028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549
ENSMUSG00000022210.8_5	chr14	+	2063	5	NIC	ENSMUSG00000022210.8	novel	1392	8	NA	NA	-12	0	intron_retention	FALSE	canonical	3	56	junction_3	10.4043260233424	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAGTGCGTGTTTATTTC	NA	False	NA	9	True	AATAAA	-24	NA	55716350	55727795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55725673_55727275
ENSMUSG00000022214.16_0	chr14	+	2505	15	FSM	ENSMUSG00000022214.16	ENSMUST00000117236.8	2538	15	26	7	7	-3	multi-exon	TRUE	canonical	3	9	junction_1	36.2303430166213	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGCTCTGTGTCTGTG	NA	False	NA	7	True	AATAAA	-12	NA	55797488	55807515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55797579_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000022214.16_10	chr14	+	2663	15	NIC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	3	-3	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	27.5910366989435	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGCTCTGTGTCTGTG	NA	False	NA	7	True	AATAAA	-12	NA	55797971	55807515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55798085_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000022214.16_12	chr14	+	2849	15	NIC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	37.1563848991732	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGCTCTGTGTCTGTG	NA	False	NA	7	True	AATAAA	-12	NA	55797976	55807515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55798276_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000022214.16_17	chr14	+	2713	15	NIC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	37.1563848991732	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAACTGGCTCTGTGTCTGT	NA	False	NA	6	True	AATAAA	-11	NA	55797976	55807514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55798276_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000022214.16_21	chr14	+	2613	15	FSM	ENSMUSG00000022214.16	ENSMUST00000072530.11	2601	15	-10	-2	-10	0	multi-exon	FALSE	canonical	3	17	junction_1	34.3960278912243	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55798375	55807521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55798433_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000022214.16_23	chr14	+	2465	15	NIC	ENSMUSG00000022214.16	novel	2601	15	NA	NA	-3	-3	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	37.8544473433898	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGCTCTGTGTCTGTG	NA	False	NA	7	True	AATAAA	-12	NA	55798382	55807515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55798433_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000022214.16_28	chr14	+	2477	13	ISM	ENSMUSG00000022214.16	ENSMUST00000128490.9	2660	14	1626	6	1530	-3	3prime_fragment	FALSE	canonical	3	111	junction_12	13.0583625823965	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGCTCTGTGTCTGTG	NA	False	NA	7	True	AATAAA	-12	NA	55800053	55807515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000022214.16_5	chr14	+	2532	15	NIC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	6	-3	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	39.769296432996	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGCTCTGTGTCTGTG	NA	False	NA	7	True	AATAAA	-12	NA	55797944	55807515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55798085_55798666_55798877_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000022214.16_6	chr14	+	2536	15	NIC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	-5	-3	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	31.9189023390625	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGCTCTGTGTCTGTG	NA	False	NA	7	True	AATAAA	-12	NA	55797963	55807515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55798085_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000022214.16_7	chr14	+	2639	15	FSM	ENSMUSG00000022214.16	ENSMUST00000152681.8	2624	15	-14	-1	2	0	multi-exon	FALSE	canonical	3	32	junction_2	36.5692661191033	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTGTGTCTGTGTCAC	NA	False	NA	11	True	AATAAA	-16	NA	55797976	55807519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55798085_55798531_55798877_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000022214.16_8	chr14	+	2643	14	FSM	ENSMUSG00000022214.16	ENSMUST00000128490.9	2660	14	11	6	-2	-3	multi-exon	FALSE	canonical	3	97	junction_1	16.6800735031656	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGCTCTGTGTCTGTG	NA	False	NA	7	True	AATAAA	-12	NA	55798438	55807515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000022216.18_1	chr14	+	996	11	FSM	ENSMUSG00000022216.18	ENSMUST00000174259.8	1112	11	114	2	-1	-2	multi-exon	FALSE	canonical	1	117	junction_4	54.1775783881118	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCCATGTCTTTATTGTA	NA	False	NA	12	True	AATAAA	-16	NA	55815930	55818983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUSG00000022216.18_11	chr14	+	183	1	ISM	ENSMUSG00000022216.18	ENSMUST00000174259.8	1112	11	2982	4	594	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCCATGTCTTTATTG	NA	False	NA	10	True	AATAAA	-14	NA	55818798	55818981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55818800_55819000
ENSMUSG00000022217.15_0	chr14	-	839	5	FSM	ENSMUSG00000022217.15	ENSMUST00000022828.9	855	5	17	-1	17	0	multi-exon	FALSE	canonical	3	89	junction_1	3.69966214673719	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATGTATTTATTGTGTT	NA	False	NA	-4	True	AATAAA	-18	NA	55822742	55818977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55819201_55819337_55819433_55819512_55819583_55822135_55822213_55822368
ENSMUSG00000022218.17_0	chr14	-	2724	15	FSM	ENSMUSG00000022218.17	ENSMUST00000178034.9	2730	15	-1	7	-1	-7	multi-exon	FALSE	canonical	3	107	junction_14	38.2803834241775	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAAAGATGCTGTTTAG	395	False	NA	-30	True	AATAAA	-15	NA	55950952	55937497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950843
ENSMUSG00000022218.17_1	chr14	-	1611	9	ISM	ENSMUSG00000022218.17	ENSMUST00000002389.9	2791	15	3538	22	3538	-7	3prime_fragment	FALSE	canonical	3	193	junction_5	15.0312175155574	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAAAGATGCTGTTTAG	4340	False	NA	-30	True	AATAAA	-15	NA	55947007	55937497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850
ENSMUSG00000022218.17_12	chr14	-	2071	12	ISM	ENSMUSG00000022218.17	ENSMUST00000002389.9	2791	15	1935	22	1935	-7	3prime_fragment	FALSE	canonical	3	144	junction_11	30.7425997276829	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAAAGATGCTGTTTAG	2737	False	NA	-30	True	AATAAA	-15	NA	55948610	55937497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395
ENSMUSG00000022218.17_4	chr14	-	2819	15	FSM	ENSMUSG00000022218.17	ENSMUST00000168729.8	2852	15	1	32	1	-7	multi-exon	FALSE	canonical	3	23	junction_14	53.0521499304684	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAAAGATGCTGTTTAG	399	False	NA	-30	True	AATAAA	-15	NA	55950948	55937497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950744
ENSMUSG00000022218.17_5	chr14	-	2474	14	ISM	ENSMUSG00000022218.17	ENSMUST00000002389.9	2791	15	475	22	475	-7	3prime_fragment	FALSE	canonical	3	136	junction_12	33.637116720994	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAAAGATGCTGTTTAG	1277	False	NA	-30	True	AATAAA	-15	NA	55950070	55937497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890
ENSMUSG00000022218.17_7	chr14	-	1556	8	ISM	ENSMUSG00000022218.17	ENSMUST00000002389.9	2791	15	3965	22	3965	-7	3prime_fragment	FALSE	canonical	3	193	junction_5	14.0610911992735	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAAAGATGCTGTTTAG	4767	False	NA	-30	True	AATAAA	-15	NA	55946580	55937497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339
ENSMUSG00000022221.15_0	chr14	-	2082	9	ISM	ENSMUSG00000022221.15	ENSMUST00000178399.3	1865	10	35	0	-34	0	intron_retention	FALSE	canonical	3	118	junction_2	9.25928587959136	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTCTGAGGTGTCAA	NA	False	NA	-3	True	AATAAA	-18	NA	56026279	56022453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694
ENSMUSG00000022221.15_2	chr14	-	1845	10	FSM	ENSMUSG00000022221.15	ENSMUST00000022830.14	1892	10	45	2	-32	0	multi-exon	FALSE	canonical	3	118	junction_2	8.73194786861711	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTCTGAGGTGTCAA	NA	False	NA	-3	True	AATAAA	-18	NA	56026277	56022453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694_56025839_56026073
ENSMUSG00000022223.10_0	chr14	-	1204	6	FSM	ENSMUSG00000022223.10	ENSMUST00000111325.5	1255	6	48	3	-1	-3	multi-exon	FALSE	canonical	3	98	junction_5	35.4547599061113	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCACTGGCTTCCGCTGT	NA	False	NA	-9	True	AATAAA	-17	NA	56137667	56134742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137646
ENSMUSG00000022223.10_1	chr14	-	2230	4	FSM	ENSMUSG00000022223.10	ENSMUST00000228151.2	385	4	2	-1847	-1	-4	multi-exon	FALSE	canonical	3	98	junction_3	32.0312347560939	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCACTGGCTTCCGCTG	NA	False	NA	-10	True	AATAAA	-16	NA	56137667	56134743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_56136763_56137103_56137187_56137270_56137378_56137646
ENSMUSG00000022223.10_14	chr14	-	728	1	NIC	ENSMUSG00000022223.10	novel	543	5	NA	NA	1841	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCACTGGCTTCCGCTG	NA	False	NA	-10	True	AATAAA	-16	NA	56135471	56134743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_56134700_56135500
ENSMUSG00000022223.10_2	chr14	-	1346	6	FSM	ENSMUSG00000022223.10	ENSMUST00000227163.2	792	6	-5	-549	-5	-3	multi-exon	FALSE	canonical	2	4	junction_5	71.6753793153549	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCACTGGCTTCCGCTGT	NA	False	NA	-9	True	AATAAA	-17	NA	56137646	56134742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137483
ENSMUSG00000022223.10_3	chr14	-	1448	5	FSM	ENSMUSG00000022223.10	ENSMUST00000227139.2	867	5	42	-623	-2	-4	multi-exon	FALSE	canonical	3	161	junction_3	15.0499169432924	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCACTGGCTTCCGCTG	NA	False	NA	-10	True	AATAAA	-16	NA	56137643	56134743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270
ENSMUSG00000022223.10_6	chr14	-	1288	5	NIC	ENSMUSG00000022223.10	novel	1255	6	NA	NA	0	-4	intron_retention	FALSE	canonical	3	98	junction_4	39.4778418863038	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCACTGGCTTCCGCTG	NA	False	NA	-10	True	AATAAA	-16	NA	56137668	56134743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137378_56137646
ENSMUSG00000022228.15_0	chr13	-	3920	4	FSM	ENSMUSG00000022228.15	ENSMUST00000032820.15	3918	4	-69	67	1	-67	multi-exon	FALSE	canonical	1	2	junction_2	8.64098759787715	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAGAAAGTAAAGATTT	NA	False	NA	NA	False	AATAAA	-35	NA	21637899	21626416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_21630000_21631955_21632065_21633610_21633687_21637747
ENSMUSG00000022228.15_1	chr13	-	2077	1	ISM	ENSMUSG00000022228.15	ENSMUST00000032820.15	3918	4	9338	66	9338	-66	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAGTAAAGATTTT	NA	False	NA	NA	False	AATAAA	-36	NA	21628492	21626415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_21626400_21628500
ENSMUSG00000022228.15_2	chr13	-	3801	3	ISM	ENSMUSG00000022228.15	ENSMUST00000110485.3	4366	6	5522	0	5452	0	3prime_fragment	FALSE	canonical	3	12	junction_2	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCATTATTGAGGATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	21632378	21626349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_21630000_21631955_21632065_21632336
ENSMUSG00000022228.15_4	chr13	-	4290	6	FSM	ENSMUSG00000022228.15	ENSMUST00000110485.3	4366	6	8	68	8	-68	multi-exon	FALSE	canonical	2	8	junction_3	4.81663783151692	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAAGAAAGTAAAGATT	NA	False	NA	NA	False	AATAAA	-34	NA	21637892	21626417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_21630000_21631955_21632065_21632336_21632655_21633443_21633504_21633610_21633687_21637747
ENSMUSG00000022228.15_5	chr13	-	2436	5	NIC	ENSMUSG00000022228.15	novel	4366	6	NA	NA	19	-1593	intron_retention	FALSE	canonical	3	7	junction_2	5.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTAAACTATGCAAGAGAC	NA	False	NA	NA	False	TATAAA	-11	NA	21637881	21627942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_21630000_21631955_21632065_21633443_21633504_21633610_21633687_21637747
ENSMUSG00000022228.15_6	chr13	-	3671	2	ISM	ENSMUSG00000022228.15	ENSMUST00000032820.15	3918	4	5786	68	5786	-68	3prime_fragment	FALSE	canonical	3	22	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAAGAAAGTAAAGATT	NA	False	NA	NA	False	AATAAA	-34	NA	21632044	21626417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_21630000_21631955
ENSMUSG00000022229.4_1	chr14	+	4045	24	NNC	ENSMUSG00000022229.4	novel	3950	23	NA	NA	-238	-2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	2.5956194011477	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCCAAGTGTCATTGTGG	NA	False	NA	3	True	AGTAAA	-12	NA	56602286	56626005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_56602417_56602557_56602747_56603405_56603556_56605839_56605900_56608232_56608434_56609195_56609310_56610035_56610171_56610299_56610418_56610644_56610914_56611883_56612083_56612216_56612327_56613594_56613730_56615739_56615933_56617404_56617581_56618219_56618357_56619953_56620105_56621523_56621693_56621782_56621938_56623249_56623374_56623568_56623715_56624304_56624439_56624606_56624709_56625096_56625189_56625349
ENSMUSG00000022229.4_2	chr14	+	4022	23	FSM	ENSMUSG00000022229.4	ENSMUST00000007340.4	3950	23	-74	2	-74	-2	multi-exon	FALSE	canonical	2	6	junction_18	2.50989776223246	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCCAAGTGTCATTGTGG	NA	False	NA	3	True	AGTAAA	-12	NA	56602450	56626005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_56602747_56603405_56603556_56605839_56605900_56608232_56608434_56609195_56609310_56610035_56610171_56610299_56610418_56610644_56610914_56611883_56612083_56612216_56612327_56613594_56613730_56615739_56615933_56617404_56617581_56618219_56618357_56619953_56620105_56621523_56621693_56621782_56621938_56623249_56623374_56623568_56623715_56624304_56624439_56624606_56624709_56625096_56625189_56625349
ENSMUSG00000022229.4_5	chr14	+	3694	22	ISM	ENSMUSG00000022229.4	ENSMUST00000007340.4	3950	23	913	2	913	-2	3prime_fragment	FALSE	canonical	2	6	junction_17	2.56171002977386	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCCAAGTGTCATTGTGG	NA	False	NA	3	True	AGTAAA	-12	NA	56603437	56626005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56603556_56605839_56605900_56608232_56608434_56609195_56609310_56610035_56610171_56610299_56610418_56610644_56610914_56611883_56612083_56612216_56612327_56613594_56613730_56615739_56615933_56617404_56617581_56618219_56618357_56619953_56620105_56621523_56621693_56621782_56621938_56623249_56623374_56623568_56623715_56624304_56624439_56624606_56624709_56625096_56625189_56625349
ENSMUSG00000022231.11_0	chr15	+	4856	23	FSM	ENSMUSG00000022231.11	ENSMUST00000067458.7	10809	23	-31	5984	-28	721	multi-exon	TRUE	canonical	0	0	junction_1	0.868407871570127	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTAAAAAAAATTGTGTG	58	False	NA	NA	False	AATGAA	-25	NA	32244927	32690503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_32245446_32347365_32347463_32417457_32417656_32460364_32460465_32474523_32474570_32538810_32538874_32548860_32548960_32550394_32550609_32562636_32562923_32568857_32568994_32574961_32575167_32609368_32609577_32618954_32619073_32628287_32628470_32631399_32631544_32641112_32641261_32669550_32669777_32673462_32673682_32679240_32679412_32681611_32681768_32682452_32682501_32686782_32686995_32689441
ENSMUSG00000022234.16_0	chr15	-	1727	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	43	83	-21	-83	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	6612	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCGTCTGCAGTTACTG	NA	False	NA	-30	True	AATAAA	-45	NA	31601907	31591028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
ENSMUSG00000022237.18_0	chr15	-	4039	1	ISM	ENSMUSG00000022237.18	ENSMUST00000123325.9	7466	4	72209	1	12677	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGGTATTTTCCTGTCA	NA	False	NA	NA	False	AATAAA	-36	NA	31295663	31291624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_31291600_31295700
ENSMUSG00000022237.18_1	chr15	-	4852	4	FSM	ENSMUSG00000022237.18	ENSMUST00000123325.9	7466	4	172	2442	-11	175	multi-exon	FALSE	canonical	2	3	junction_2	1.88561808316413	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCCACATAGCTCTTC	61	False	NA	NA	False	AATAAA	-18	NA	31367700	31294065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_31298131_31305137_31305279_31325231_31325362_31367184
ENSMUSG00000022237.18_3	chr15	-	4266	3	ISM	ENSMUSG00000022237.18	ENSMUST00000110410.10	2070	4	42225	-2571	-69	2	3prime_fragment	FALSE	canonical	2	3	junction_2	2	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGCTTCTTCTGTTTGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	31325464	31294238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_31298131_31305137_31305279_31325231
ENSMUSG00000022237.18_4	chr15	-	1594	2	FSM	ENSMUSG00000022237.18	ENSMUST00000076942.5	1641	2	37	10	1	-10	multi-exon	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGTTTTGCCTAGTGT	84	False	NA	NA	False	NA	NA	NA	31367677	31324101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_31325203_31367184
ENSMUSG00000022237.18_6	chr15	-	1357	1	NIC	ENSMUSG00000022237.18	novel	7466	4	NA	NA	-68	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGTATGTTTTGCCT	NA	False	NA	NA	False	NA	NA	NA	31325463	31324106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_31324100_31325500
ENSMUSG00000022237.18_8	chr15	-	1771	2	ISM	ENSMUSG00000022237.18	ENSMUST00000156679.2	5661	5	-22	30775	-11	-15	5prime_fragment	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGTATGTTTTGCCT	61	False	NA	NA	False	NA	NA	NA	31367700	31324106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_31325362_31367184
ENSMUSG00000022240.11_1	chr15	+	5069	22	FSM	ENSMUSG00000022240.11	ENSMUST00000226119.2	4111	22	-372	-586	86	218	multi-exon	FALSE	canonical	0	0	junction_3	16.3558778189685	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATCCTTGCTAAGAATG	70	False	NA	NA	False	AATAAA	-17	NA	30172824	31028773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_30173310_30332155_30332293_30480927_30481041_30619367_30619400_30619968_30620086_30634789_30634963_30646914_30647471_30669557_30669753_30683360_30683617_30775244_30775378_30806831_30807046_30847373_30847558_30881268_30881387_30887239_30887426_30905805_30905980_30922000_30922152_30966901_30967113_30972938_30973024_31005094_31005222_31009178_31009311_31020846_31020921_31027557
ENSMUSG00000022240.11_3	chr15	+	5033	23	FSM	ENSMUSG00000022240.11	ENSMUST00000081728.7	5944	23	197	714	-177	218	multi-exon	FALSE	canonical	0	0	junction_3	16.7776538711909	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATCCTTGCTAAGAATG	5	True	NA	NA	False	AATAAA	-17	NA	30172935	31028773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_30173310_30332155_30332293_30480927_30481041_30619367_30619400_30619968_30620086_30634789_30634963_30646914_30647471_30669557_30669753_30683360_30683617_30775244_30775378_30806831_30807046_30847373_30847558_30881268_30881387_30887239_30887426_30905805_30905980_30920857_30920933_30922000_30922152_30966901_30967113_30972938_30973024_31005094_31005222_31009178_31009311_31020846_31020921_31027557
ENSMUSG00000022240.11_5	chr15	+	4055	17	ISM	ENSMUSG00000022240.11	ENSMUST00000081728.7	5944	23	474206	716	267	216	3prime_fragment	FALSE	canonical	2	8	junction_10	13.4530433359891	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCCATCCTTGCTAAGAA	-2	True	NA	NA	False	AATAAA	-15	NA	30646944	31028771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_30647471_30669557_30669753_30683360_30683617_30775244_30775378_30806831_30807046_30847373_30847558_30881268_30881387_30887239_30887426_30905805_30905980_30920857_30920933_30922000_30922152_30966901_30967113_30972938_30973024_31005094_31005222_31009178_31009311_31020846_31020921_31027557
ENSMUSG00000022240.11_6	chr15	+	3985	16	ISM	ENSMUSG00000022240.11	ENSMUST00000226119.2	4111	22	473745	-586	264	218	3prime_fragment	FALSE	canonical	3	23	junction_10	10.715720538847	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATCCTTGCTAAGAATG	-5	True	NA	NA	False	AATAAA	-17	NA	30646941	31028773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_30647471_30669557_30669753_30683360_30683617_30775244_30775378_30806831_30807046_30847373_30847558_30881268_30881387_30887239_30887426_30905805_30905980_30922000_30922152_30966901_30967113_30972938_30973024_31005094_31005222_31009178_31009311_31020846_31020921_31027557
ENSMUSG00000022240.11_8	chr15	+	2339	10	ISM	ENSMUSG00000022240.11	ENSMUST00000226119.2	4111	22	473658	105924	177	-98659	internal_fragment	FALSE	canonical	3	25	junction_9	11.0933190883099	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAACCATTTGAATGTTA	-25	True	NA	NA	False	AATAAA	-16	NA	30646854	30922263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_30647471_30669557_30669753_30683360_30683617_30775244_30775378_30806831_30807046_30847373_30847558_30881268_30881387_30887239_30887426_30905805_30905980_30922000
ENSMUSG00000022240.11_9	chr15	+	2053	9	ISM	ENSMUSG00000022240.11	ENSMUST00000226119.2	4111	22	473805	122084	324	99057	internal_fragment	FALSE	canonical	3	29	junction_3	10.3795170889594	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGAAAAACCAATTATATT	55	False	NA	NA	False	AATAAA	-15	NA	30647001	30906103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_30647471_30669557_30669753_30683360_30683617_30775244_30775378_30806831_30807046_30847373_30847558_30881268_30881387_30887239_30887426_30905805
ENSMUSG00000022241.7_0	chr15	-	2555	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	41	1409	-23	295	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	4976	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACAGAGTTGAATTATG	NA	False	NA	-13	True	AATAAA	-24	NA	11399710	11383795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
ENSMUSG00000022244.8_0	chr15	+	1541	5	FSM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	12	1024	12	595	multi-exon	FALSE	canonical	3	110	junction_2	9.36416040016402	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGTGAGCAGTGGTTTT	61	False	NA	30	True	AATAAA	-40	NA	10981853	10995688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_10982140_10983435_10983580_10984771_10984933_10988844_10989032_10994925
ENSMUSG00000022244.8_3	chr15	+	1353	4	NIC	ENSMUSG00000022244.8	novel	2577	5	NA	NA	39	595	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	57.3313953160822	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGTGAGCAGTGGTTTT	88	False	NA	30	True	AATAAA	-40	NA	10981880	10995688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_10982140_10983435_10983580_10988844_10989032_10994925
ENSMUSG00000022244.8_6	chr15	+	1137	4	ISM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	1686	1050	36	569	3prime_fragment	FALSE	canonical	3	110	junction_1	9.97775303139718	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATAAAACTCTTGTTT	1735	False	NA	4	True	AATAAA	-14	NA	10983527	10995662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_10983580_10984771_10984933_10988844_10989032_10994925
ENSMUSG00000022246.15_0	chr15	-	4815	17	NIC	ENSMUSG00000022246.15	novel	4759	18	NA	NA	-96	-10	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	36.5957114119947	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCTTTTATGGATTTGTG	1	True	NA	-13	True	AATAAA	-16	NA	10714806	10569064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
ENSMUSG00000022246.15_1	chr15	-	4892	18	FSM	ENSMUSG00000022246.15	ENSMUST00000169385.3	4759	18	-143	10	-86	-10	multi-exon	FALSE	canonical	3	80	junction_8	29.2639816641101	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCTTTTATGGATTTGTG	8754	False	NA	-13	True	AATAAA	-16	NA	10714796	10569064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10589344_10589432_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
ENSMUSG00000022246.15_4	chr15	-	2962	4	ISM	ENSMUSG00000022246.15	ENSMUST00000090339.11	4909	18	138279	10	24826	-10	3prime_fragment	FALSE	canonical	3	179	junction_3	8.60232526704263	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCTTTTATGGATTTGTG	NA	False	NA	-13	True	AATAAA	-16	NA	10575347	10569064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397
ENSMUSG00000022246.15_7	chr15	-	4725	16	NIC	ENSMUSG00000022246.15	novel	4759	18	NA	NA	-93	-10	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	41.6628798279182	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCTTTTATGGATTTGTG	4	True	NA	-13	True	AATAAA	-16	NA	10714803	10569064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
ENSMUSG00000022247.13_1	chr15	-	1222	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	39	1403	1	-1403	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	1551	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCTACTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-13	NA	10485994	10476267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
ENSMUSG00000022248.15_11	chr15	+	1654	5	NIC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	-2	intron_retention	FALSE	canonical	3	683	junction_1	74.1598779664584	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTATCCGACTTACTG	35	False	NA	10	True	AATAAA	-15	NA	10486134	10493758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
ENSMUSG00000022248.15_2	chr15	+	1456	6	FSM	ENSMUSG00000022248.15	ENSMUST00000022856.15	1514	6	41	17	-10	-2	multi-exon	FALSE	canonical	3	345	junction_1	183.88039590995	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTATCCGACTTACTG	45	False	NA	10	True	AATAAA	-15	NA	10486144	10493758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_10486351_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
ENSMUSG00000022248.15_5	chr15	+	1395	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	324.625639091486	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATCCGACTTACTGTA	44	False	NA	12	True	AATAAA	-17	NA	10486143	10493760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_10486368_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
ENSMUSG00000022248.15_6	chr15	+	1573	6	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	2	0	intron_retention	FALSE	canonical	0	0	junction_5	316.528039832177	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATCCGACTTACTGTA	37	False	NA	12	True	AATAAA	-17	NA	10486136	10493760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
ENSMUSG00000022253.18_0	chr15	+	3204	12	NIC	ENSMUSG00000022253.18	novel	4135	13	NA	NA	137	303	combination_of_known_junctions	FALSE	canonical	3	231	junction_7	43.3900243705397	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTTTGTTTTCTTATTT	44	False	NA	-1	True	AATAAA	-19	NA	9071476	9110251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_9071846_9083349_9083439_9084241_9084331_9085804_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
ENSMUSG00000022253.18_1	chr15	+	3267	13	FSM	ENSMUSG00000022253.18	ENSMUST00000190591.10	4135	13	138	730	138	301	multi-exon	FALSE	canonical	3	112	junction_7	89.5046553724069	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTACTTTGTTTTCTTAT	45	False	NA	-3	True	AATAAA	-17	NA	9071477	9110249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_9071846_9083349_9083439_9084241_9084331_9085804_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9098897_9098964_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
ENSMUSG00000022253.18_45	chr15	+	1791	1	ISM	ENSMUSG00000022253.18	ENSMUST00000190591.10	4135	13	37122	727	5386	304	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTTGTTTTCTTATTTC	NA	False	NA	0	True	AATAAA	-20	NA	9108461	9110252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_9108500_9110300
ENSMUSG00000022255.17_0	chr15	+	4832	12	FSM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	-3	2090	-3	-2090	multi-exon	FALSE	canonical	3	477	junction_6	48.3699585751527	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTTACATTCTCTGTG	49	False	NA	22	True	AATAAA	-23	NA	34082861	34143680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436_34134545_34136832_34136974_34139886_34140044_34140837
ENSMUSG00000022255.17_10	chr15	+	4729	11	NIC	ENSMUSG00000022255.17	novel	6919	12	NA	NA	-2	-2093	combination_of_known_junctions	FALSE	canonical	3	78	junction_6	155.039865841015	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATTGTTACATTCTCT	50	False	NA	19	True	AATAAA	-20	NA	34082862	34143677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34131309_34131435_34134436_34134545_34136832_34136974_34139886_34140044_34140837
ENSMUSG00000022255.17_2	chr15	+	4923	13	NIC	ENSMUSG00000022255.17	novel	6919	12	NA	NA	-5	-2091	combination_of_known_junctions	TRUE	canonical	3	44	junction_6	197.527406677881	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTGTTACATTCTCTGT	47	False	NA	21	True	AATAAA	-22	NA	34082859	34143679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34121568_34121659_34123813_34123913_34131309_34131435_34134436_34134545_34136832_34136974_34139886_34140044_34140837
ENSMUSG00000022255.17_3	chr15	+	4675	11	NIC	ENSMUSG00000022255.17	novel	6919	12	NA	NA	-3	-2090	combination_of_known_junctions	FALSE	canonical	3	69	junction_10	158.303032188269	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTTACATTCTCTGTG	49	False	NA	22	True	AATAAA	-23	NA	34082861	34143680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436_34134545_34136832_34136974_34140837
ENSMUSG00000022255.17_71	chr15	+	2295	1	ISM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	58521	2090	7750	-2090	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTTACATTCTCTGTG	239	False	NA	22	True	AATAAA	-23	NA	34141385	34143680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_34141400_34143700
ENSMUSG00000022257.5_0	chr15	+	1773	7	FSM	ENSMUSG00000022257.5	ENSMUST00000022867.5	1902	7	122	7	1	0	multi-exon	FALSE	canonical	3	358	junction_4	34.9698282650757	428	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACAGTCGTGGCTCC	112	False	NA	NA	False	ATTAAA	-15	NA	34238295	34284441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
ENSMUSG00000022261.7_0	chr15	+	3221	5	FSM	ENSMUSG00000022261.7	ENSMUST00000022871.7	3527	5	94	212	94	-212	multi-exon	FALSE	canonical	3	85	junction_1	11.0227038425243	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTAACTCATTGTATAGA	120	False	NA	NA	False	AATAAA	-14	NA	32920962	33034869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_32921452_33017247_33017360_33023794_33023932_33028192_33028329_33032522
ENSMUSG00000022261.7_4	chr15	+	1967	1	ISM	ENSMUSG00000022261.7	ENSMUST00000022871.7	3527	5	112038	208	112038	-208	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCATTGTATAGACTCA	NA	False	NA	NA	False	AATAAA	-18	NA	33032906	33034873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_33032900_33034900
ENSMUSG00000022263.11_0	chr15	-	2682	3	ISM	ENSMUSG00000022263.11	ENSMUST00000227999.2	3132	8	6781	1	980	-1	3prime_fragment	FALSE	canonical	3	13	junction_1	2	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGGTGTTAGGCTTTTT	NA	False	NA	-1	True	ATTAAA	-13	NA	27735628	27730737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_27733117_27733591_27733731_27735464
ENSMUSG00000022263.11_17	chr15	-	2781	4	ISM	ENSMUSG00000022263.11	ENSMUST00000227999.2	3132	8	5814	2	13	-2	3prime_fragment	FALSE	canonical	3	13	junction_1	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATACTGGTGTTAGGCTTTT	NA	False	NA	-2	True	ATTAAA	-12	NA	27736595	27730738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_27733117_27733591_27733731_27735464_27735666_27736532
ENSMUSG00000022263.11_18	chr15	-	4225	10	ISM	ENSMUSG00000022263.11	ENSMUST00000227030.2	2335	11	-98	-1475	-98	-3	intron_retention	FALSE	canonical	2	9	junction_9	3.4029761846919	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACTGGTGTTAGGCTTT	6740	False	NA	-3	True	ATTAAA	-11	NA	27748735	27730739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_27733117_27733591_27733731_27735464_27735666_27736532_27736612_27740660_27740783_27741001_27741165_27741337_27741366_27742457_27742597_27744038_27744287_27748006
ENSMUSG00000022263.11_2	chr15	-	7002	31	ISM	ENSMUSG00000022263.11	ENSMUST00000090247.7	11495	57	195628	1	-6437	-1	3prime_fragment	FALSE	canonical	1	1	junction_30	4.26367082323306	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGGTGTTAGGCTTTTT	NA	False	NA	-1	True	ATTAAA	-13	NA	27830306	27730737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_27733117_27733591_27733731_27735464_27735666_27736532_27736612_27740660_27740783_27741001_27741165_27741337_27741366_27742457_27742597_27744038_27744287_27748006_27748816_27749864_27750043_27752675_27752868_27753797_27753876_27754098_27754150_27755223_27755317_27756551_27756642_27758425_27758496_27764039_27764144_27765804_27765872_27767970_27768120_27770395_27770492_27772995_27773167_27773966_27774260_27805715_27805960_27818149_27818250_27818985_27819129_27821425_27821528_27824066_27824258_27825748_27825861_27828351_27828445_27830228
ENSMUSG00000022263.11_3	chr15	-	8000	40	ISM	ENSMUSG00000022263.11	ENSMUST00000090247.7	11495	57	179065	1	-5042	-1	3prime_fragment	FALSE	canonical	1	1	junction_30	3.91880108864772	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGGTGTTAGGCTTTTT	9606	False	NA	-1	True	ATTAAA	-13	NA	27846869	27730737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_27733117_27733591_27733731_27735464_27735666_27736532_27736612_27740660_27740783_27741001_27741165_27741337_27741366_27742457_27742597_27744038_27744287_27748006_27748816_27749864_27750043_27752675_27752868_27753797_27753876_27754098_27754150_27755223_27755317_27756551_27756642_27758425_27758496_27764039_27764144_27765804_27765872_27767970_27768120_27770395_27770492_27772995_27773167_27773966_27774260_27805715_27805960_27818149_27818250_27818985_27819129_27821425_27821528_27824066_27824258_27825748_27825861_27828351_27828445_27830228_27830319_27830797_27830868_27831439_27831550_27832099_27832167_27832836_27832953_27833047_27833243_27838866_27838990_27841812_27841929_27844895_27845011_27846795
ENSMUSG00000022263.11_5	chr15	-	2061	1	ISM	ENSMUSG00000022263.11	ENSMUST00000227999.2	3132	8	9609	3	3808	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACTGGTGTTAGGCTTT	NA	False	NA	-3	True	ATTAAA	-11	NA	27732800	27730739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_27730700_27732800
ENSMUSG00000022263.11_8	chr15	-	4825	15	NIC	ENSMUSG00000022263.11	novel	11495	57	NA	NA	-6619	-3	intron_retention	FALSE	canonical	0	0	junction_7	4.7186127328325	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACTGGTGTTAGGCTTT	7799	False	NA	-3	True	ATTAAA	-11	NA	27755256	27730739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_27733117_27733591_27733731_27735464_27735666_27736532_27736612_27740660_27740783_27741001_27741165_27741337_27741366_27742469_27742597_27744038_27744287_27748006_27748816_27749864_27750043_27752675_27752868_27753797_27753876_27754098_27754150_27755223
ENSMUSG00000022263.11_9	chr15	-	3337	9	ISM	ENSMUSG00000022263.11	ENSMUST00000227030.2	2335	11	4510	-1475	-38	-3	3prime_fragment	FALSE	canonical	2	10	junction_8	3.17952433549423	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACTGGTGTTAGGCTTT	NA	False	NA	-3	True	ATTAAA	-11	NA	27744127	27730739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_27733117_27733591_27733731_27735464_27735666_27736532_27736612_27740660_27740783_27741001_27741165_27741337_27741366_27742457_27742597_27744038
ENSMUSG00000022265.8_19	chr15	+	1681	1	ISM	ENSMUSG00000022265.8	ENSMUST00000022875.7	3498	12	126547	5	21777	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATGTGTGGCTATTTTC	NA	False	NA	18	True	ATTAAA	-14	NA	27593309	27594990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_27593300_27595000
ENSMUSG00000022265.8_3	chr15	+	3492	12	FSM	ENSMUSG00000022265.8	ENSMUST00000022875.7	3498	12	-5	11	-5	-11	multi-exon	FALSE	canonical	3	63	junction_1	12.2109556553338	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTTAAAATGTGTGGCT	47	False	NA	12	True	ATTAAA	-8	NA	27466757	27594984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_27467186_27544336_27544554_27553774_27553894_27557249_27557334_27562809_27562981_27564987_27565123_27567600_27567694_27571644_27571741_27590428_27590559_27591003_27591128_27591522_27591623_27593189
ENSMUSG00000022270.17_0	chr15	+	3095	9	FSM	ENSMUSG00000022270.17	ENSMUST00000022881.15	3248	9	138	15	138	4	multi-exon	FALSE	canonical	3	25	junction_6	4.98591766879478	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTACCAGTATTCCT	46	False	NA	6	True	TATAAA	-2	NA	25843403	25973758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_25843699_25889566_25889674_25895198_25895230_25964309_25964437_25966718_25966804_25968492_25968631_25969881_25969947_25970183_25970311_25971638
ENSMUSG00000022270.17_2	chr15	+	2782	7	NIC	ENSMUSG00000022270.17	novel	579	6	NA	NA	-34	-4	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	10.719919153924	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTCCTTTTTATGTGTA	40	False	NA	17	True	TATAAA	-13	NA	25933603	25973769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_25933713_25964309_25964437_25966718_25966804_25968492_25968631_25969881_25969947_25970183_25970311_25971638
ENSMUSG00000022270.17_3	chr15	+	2517	5	ISM	ENSMUSG00000022270.17	ENSMUST00000228306.2	1430	7	23980	-1343	23980	-7	3prime_fragment	FALSE	canonical	3	25	junction_2	5.78791845139511	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTATTCCTTTTTATGT	NA	False	NA	14	True	TATAAA	-10	NA	25966744	25973766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_25966804_25968492_25968631_25969881_25969947_25970183_25970311_25971638
ENSMUSG00000022270.17_6	chr15	+	2212	2	ISM	ENSMUSG00000022270.17	ENSMUST00000228306.2	1430	7	27465	-1346	27465	-4	3prime_fragment	FALSE	canonical	3	27	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTCCTTTTTATGTGTA	NA	False	NA	17	True	TATAAA	-13	NA	25970229	25973769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_25970311_25971638
ENSMUSG00000022270.17_7	chr15	+	1703	1	ISM	ENSMUSG00000022270.17	ENSMUST00000022881.15	3248	9	128803	2	29304	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCTTTTTATGTGTATG	83	False	NA	19	True	TATAAA	-15	NA	25972068	25973771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_25972100_25973800
ENSMUSG00000022272.18_0	chr15	+	8070	41	FSM	ENSMUSG00000022272.18	ENSMUST00000110457.8	8125	41	49	6	25	-4	multi-exon	FALSE	canonical	3	32	junction_1	332.593497192895	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGTGTTTGCTTTCCTT	86	False	NA	10	True	AATAAA	-11	NA	25622659	25813753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_25623117_25666511_25666611_25701647_25701807_25714114_25714303_25722255_25722391_25723969_25724095_25725157_25725172_25725281_25725367_25726505_25726610_25732055_25732186_25734073_25734193_25736031_25736179_25736486_25736588_25736680_25736748_25737535_25737629_25738042_25738112_25739372_25739456_25742426_25742536_25744261_25744343_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ENSMUSG00000022272.18_132	chr15	+	989	1	ISM	ENSMUSG00000022272.18	ENSMUST00000110457.8	8125	41	190156	4	32491	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTGCTTTCCTTGA	47	False	NA	12	True	AATAAA	-13	NA	25812766	25813755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_25812800_25813800
ENSMUSG00000022272.18_26	chr15	+	5820	23	NIC	ENSMUSG00000022272.18	novel	5880	21	NA	NA	229	-2	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	149.870088371328	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTGCTTTCCTTGA	58	False	NA	12	True	AATAAA	-13	NA	25753293	25813755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_25753407_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ENSMUSG00000022272.18_46	chr15	+	5886	23	NIC	ENSMUSG00000022272.18	novel	748	4	NA	NA	188	-2	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	157.493040643832	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTGCTTTCCTTGA	272	False	NA	12	True	AATAAA	-13	NA	25759058	25813755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_25759238_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ENSMUSG00000022272.18_57	chr15	+	5998	23	NIC	ENSMUSG00000022272.18	novel	1030	7	NA	NA	31	-2	combination_of_known_junctions	FALSE	canonical	3	400	junction_1	95.5578769711826	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTGCTTTCCTTGA	21	False	NA	12	True	AATAAA	-13	NA	25774103	25813755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ENSMUSG00000022272.18_99	chr15	+	5006	17	ISM	ENSMUSG00000022272.18	ENSMUST00000022882.12	5880	21	28142	1	862	-1	3prime_fragment	FALSE	canonical	3	658	junction_13	51.5299897511148	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTTTGCTTTCCTTGAG	1121	False	NA	13	True	AATAAA	-14	NA	25781137	25813756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
ENSMUSG00000022280.10_0	chr15	-	4274	10	FSM	ENSMUSG00000022280.10	ENSMUST00000022890.10	4277	10	-3	6	-3	-6	multi-exon	FALSE	canonical	3	142	junction_2	15.6946165182307	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGATTTGGTGTGTGCCC	NA	False	NA	-5	True	AATAAA	-11	NA	36283296	36240084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_36242212_36244232_36244377_36245561_36245776_36247267_36247430_36247896_36248012_36253146_36253310_36254528_36254674_36260160_36260370_36265421_36266178_36283057
ENSMUSG00000022280.10_7	chr15	-	781	1	FSM	ENSMUSG00000098457.3	ENSMUST00000185150.3	119	1	-555	-107	-555	107	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGATTTGGTGTGTGCCC	NA	False	NA	-5	True	AATAAA	-11	NA	36240865	36240084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_36240100_36240900
ENSMUSG00000022283.16_2	chr15	-	2809	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	1	7	1	-7	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	8860	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGTAGATGGTTATGCT	378	False	NA	-14	True	AATAAA	-9	NA	36609216	36595911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ENSMUSG00000022285.18_0	chr15	-	2811	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	242	-931	-76	-3	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	6663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCATGAGTCTCAGTGG	682	False	NA	-42	True	NA	NA	NA	36793839	36771016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
ENSMUSG00000022285.18_1	chr15	-	1574	1	ISM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	22194	1	20070	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	247	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATGAGTCTCAGTGGTG	NA	False	NA	-40	True	NA	NA	NA	36772588	36771014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_36771000_36772600
ENSMUSG00000022285.18_5	chr15	-	2617	5	ISM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	3627	3	1503	-3	3prime_fragment	FALSE	canonical	3	3946	junction_3	159.548386077704	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCATGAGTCTCAGTGG	3366	False	NA	-42	True	NA	NA	NA	36791155	36771016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927
ENSMUSG00000022285.18_7	chr15	-	3004	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	278	6	271	-6	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGAGGCATGAGTCTCAG	17	True	NA	-45	True	NA	NA	NA	36794504	36771019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
ENSMUSG00000022286.17_5	chr15	+	3006	3	ISM	ENSMUSG00000022286.17	ENSMUST00000161933.2	3617	9	29337	0	12003	0	3prime_fragment	FALSE	canonical	3	68	junction_1	5	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAAACAGCTCTCTAGTA	218	False	NA	13	True	AATAAA	-14	NA	37347983	37363806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_37348099_37358613_37358679_37360980
ENSMUSG00000022286.17_6	chr15	+	5301	2	ISM	ENSMUSG00000022286.17	ENSMUST00000159221.2	717	7	12009	-2621	12009	-1	intron_retention	FALSE	canonical	3	68	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCAAACAGCTCTCTAGT	224	False	NA	12	True	AATAAA	-13	NA	37347989	37363805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_37348099_37358613
ENSMUSG00000022286.17_9	chr15	+	2299	1	ISM	ENSMUSG00000022286.17	ENSMUST00000022895.15	4947	16	128228	7	25527	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAAACAGCTCTCTAGTA	NA	False	NA	13	True	AATAAA	-14	NA	37361507	37363806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_37361500_37363800
ENSMUSG00000022292.17_0	chr15	-	4451	9	FSM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	100	10	-74	-10	multi-exon	FALSE	canonical	3	32	junction_4	8.71779788708135	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAAATAAATTGTGTAGTT	7208	False	NA	NA	False	AATAAA	-6	NA	37961247	37924205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_37927642_37929281_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
ENSMUSG00000022292.17_1	chr15	-	2606	1	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	34536	10	21875	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAAATAAATTGTGTAGTT	NA	False	NA	NA	False	AATAAA	-6	NA	37926811	37924205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_37924200_37926800
ENSMUSG00000022292.17_10	chr15	-	200	1	ISM	ENSMUSG00000022292.17	ENSMUST00000127362.2	1782	3	468	9423	468	-7719	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAATCATGAAAAATGCA	6169	False	NA	NA	False	AATACA	-5	NA	37954914	37954714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_37954700_37954900
ENSMUSG00000022292.17_11	chr15	-	4296	8	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	7347	7	1382	-7	3prime_fragment	FALSE	canonical	3	32	junction_4	8.19158353533226	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATTGTGTAGTTATA	7083	False	NA	NA	False	AATAAA	-9	NA	37954000	37924202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_37927642_37929281_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842
ENSMUSG00000022295.9_2	chr15	+	2038	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	21	12	10	-9	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	1421	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAAACTATGCAGTGCTA	205	False	NA	19	True	AATAAA	-5	NA	38662197	38692678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
ENSMUSG00000022297.16_0	chr15	+	4039	7	FSM	ENSMUSG00000022297.16	ENSMUST00000179165.9	4325	7	284	2	-15	0	multi-exon	FALSE	canonical	2	8	junction_1	5.64702478203247	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGATTGTATTGTGTG	NA	False	NA	NA	False	AATAAA	-12	NA	38869712	38901581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_38869828_38870619_38870959_38889060_38889258_38894209_38895228_38897244_38897394_38898202_38898623_38899780
ENSMUSG00000022297.16_10	chr15	+	2947	4	ISM	ENSMUSG00000022297.16	ENSMUST00000022906.8	4081	7	24925	-2	23871	0	3prime_fragment	FALSE	canonical	3	13	junction_2	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTGTATTGTGTGCT	NA	False	NA	NA	False	AATAAA	-14	NA	38894652	38901583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_38895228_38897244_38897394_38898202_38898623_38899780
ENSMUSG00000022297.16_3	chr15	+	4082	7	FSM	ENSMUSG00000022297.16	ENSMUST00000022906.8	4081	7	1	-2	1	0	multi-exon	FALSE	canonical	2	5	junction_1	6.28269227499025	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTGTATTGTGTGCT	NA	False	NA	NA	False	AATAAA	-14	NA	38869728	38901583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_38869885_38870619_38870959_38889060_38889258_38894209_38895228_38897244_38897394_38898202_38898623_38899780
ENSMUSG00000022297.16_5	chr15	+	3883	6	NIC	ENSMUSG00000022297.16	novel	4325	7	NA	NA	-14	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	8.51821577561874	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGTATAAAAGATTGTAT	NA	False	NA	NA	False	AATAAA	-6	NA	38869713	38901575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_38869828_38870619_38870959_38889060_38889258_38894209_38895228_38898202_38898623_38899780
ENSMUSG00000022299.10_0	chr15	-	2307	7	FSM	ENSMUSG00000022299.10	ENSMUST00000022908.10	5905	7	42	3556	-1	181	multi-exon	FALSE	canonical	3	83	junction_3	10.9392260542813	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGGTGTTTGCTATAA	NA	False	NA	NA	False	AATAAA	-26	NA	38976069	38958181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_38959504_38960914_38961061_38961523_38961638_38963267_38963429_38965377_38965464_38969226_38969378_38975742
ENSMUSG00000022299.10_1	chr15	-	3652	1	ISM	ENSMUSG00000022299.10	ENSMUST00000022908.10	5905	7	17827	7	17743	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAAGTCTCAATTTGG	NA	False	NA	NA	False	AATAAA	-9	NA	38958284	38954632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_38954600_38958300
ENSMUSG00000022299.10_10	chr15	-	2208	7	FSM	ENSMUSG00000022299.10	ENSMUST00000227323.2	979	7	51	-1280	10	179	multi-exon	FALSE	canonical	2	3	junction_3	37.5307281511504	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAATGGTGTTTGCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	38976017	38958183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_38959504_38960914_38961061_38961523_38961593_38963267_38963429_38965377_38965464_38969226_38969378_38975742
ENSMUSG00000022299.10_2	chr15	-	2399	7	NNC	ENSMUSG00000022299.10	novel	5905	7	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	35.1267546022813	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAAGTCTCAATTTGG	NA	False	NA	NA	False	AATAAA	-9	NA	38976065	38954632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_38956051_38960914_38961061_38961523_38961638_38963267_38963429_38965377_38965464_38969226_38969378_38975742
ENSMUSG00000022300.11_0	chr15	+	1505	11	FSM	ENSMUSG00000022300.11	ENSMUST00000022909.10	1551	11	40	6	40	-3	multi-exon	FALSE	canonical	2	478	junction_2	96.4514903980234	632	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAACACTGCAGTTGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	38976299	39010245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_38976447_38982105_38982306_38982739_38982848_38986607_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
ENSMUSG00000022303.10_0	chr15	+	1935	4	FSM	ENSMUSG00000022303.10	ENSMUST00000227368.2	1825	4	-112	2	-110	-2	multi-exon	FALSE	canonical	1	2	junction_1	9.0921211313239	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTTGCCTTGATCATGT	NA	False	NA	4	True	NA	NA	NA	39609215	39624328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_39609364_39617579_39618622_39622877_39623019_39623724
ENSMUSG00000022303.10_1	chr15	+	1870	3	ISM	ENSMUSG00000022303.10	ENSMUST00000227368.2	1825	4	8169	2	8157	-2	3prime_fragment	FALSE	canonical	3	10	junction_1	7	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTTGCCTTGATCATGT	NA	False	NA	4	True	NA	NA	NA	39617496	39624328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_39618622_39622877_39623019_39623724
ENSMUSG00000022303.10_2	chr15	+	1937	3	ISM	ENSMUSG00000022303.10	ENSMUST00000022913.6	1997	4	8270	6	8258	-2	3prime_fragment	FALSE	canonical	3	14	junction_1	5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTTGCCTTGATCATGT	NA	False	NA	4	True	NA	NA	NA	39617597	39624328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_39618622_39622709_39623019_39623724
ENSMUSG00000022303.10_5	chr15	+	4967	2	ISM	ENSMUSG00000022303.10	ENSMUST00000227368.2	1825	4	9330	0	9318	0	3prime_fragment	FALSE	canonical	3	24	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGCCTTGATCATGTGA	NA	False	NA	6	True	NA	NA	NA	39618657	39624330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_39623019_39623724
ENSMUSG00000022304.14_2	chr15	-	709	2	ISM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	72605	1	8386	-1	3prime_fragment	FALSE	canonical	3	216	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTAGTGTCTGAGTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	39648261	39646093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_39646506_39647964
ENSMUSG00000022304.14_3	chr15	-	2086	10	FSM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	23	1	20	-1	multi-exon	FALSE	canonical	0	0	junction_5	67.0043300609265	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTAGTGTCTGAGTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	39720843	39646093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_39646506_39647964_39648111_39656622_39656831_39687561_39687705_39690259_39690402_39691370_39691528_39705318_39705509_39707253_39707434_39710004_39710164_39720494
ENSMUSG00000022305.14_0	chr15	-	4272	7	FSM	ENSMUSG00000022305.14	ENSMUST00000022916.13	4109	7	-177	14	29	0	multi-exon	FALSE	canonical	3	34	junction_6	6.95221787153807	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTACTTTTTAAATCAAAG	NA	False	NA	-16	True	ATTAAA	-22	NA	39807361	39733998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_39736275_39739482_39739616_39741190_39742296_39743515_39743719_39748401_39748538_39767934_39767992_39806999
ENSMUSG00000022305.14_1	chr15	-	4217	6	FSM	ENSMUSG00000022305.14	ENSMUST00000110305.3	4244	6	27	0	27	0	multi-exon	FALSE	canonical	3	14	junction_5	13.6733317081098	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTACTTTTTAAATCAAAG	NA	False	NA	-16	True	ATTAAA	-22	NA	39807363	39733998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_39736275_39739482_39739616_39741190_39742296_39743515_39743719_39748401_39748538_39806999
ENSMUSG00000022305.14_12	chr15	-	1545	1	ISM	ENSMUSG00000022305.14	ENSMUST00000022916.13	4109	7	71645	10	71547	4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTTTAAATCAAAGTTGT	NA	False	NA	-12	True	ATTAAA	-26	NA	39735539	39733994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_39734000_39735500
ENSMUSG00000022305.14_7	chr15	-	2775	3	ISM	ENSMUSG00000022305.14	ENSMUST00000022916.13	4109	7	65628	14	65530	0	3prime_fragment	FALSE	canonical	3	41	junction_1	2.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTACTTTTTAAATCAAAG	NA	False	NA	-16	True	ATTAAA	-22	NA	39741556	39733998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_39736275_39739482_39739616_39741190
ENSMUSG00000022307.17_13	chr15	+	2983	9	ISM	ENSMUSG00000022307.17	ENSMUST00000170127.9	4346	14	1	34018	1	0	5prime_fragment	FALSE	canonical	3	180	junction_7	41.0662574384372	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCTAGTTTCATTTATA	NA	False	NA	NA	False	NA	NA	NA	41652337	41690425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_41652629_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285
ENSMUSG00000022307.17_14	chr15	+	4335	14	FSM	ENSMUSG00000022307.17	ENSMUST00000170127.9	4346	14	1	10	1	-8	multi-exon	FALSE	canonical	3	180	junction_7	35.9990137931977	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATGCAAATGAGTTTGG	NA	False	NA	NA	False	AATAAA	-10	NA	41652337	41724433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_41652629_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285_41689449_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
ENSMUSG00000022307.17_2	chr15	+	4537	16	FSM	ENSMUSG00000022307.17	ENSMUST00000090096.11	4515	16	-30	8	-30	-8	multi-exon	FALSE	canonical	3	24	junction_1	96.1974820645299	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATGCAAATGAGTTTGG	NA	False	NA	NA	False	AATAAA	-10	NA	41310847	41724433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_41310986_41398965_41399124_41516860_41517058_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285_41689449_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
ENSMUSG00000022307.17_37	chr15	+	3041	8	ISM	ENSMUSG00000022307.17	ENSMUST00000090095.13	4158	14	30686	8	-10731	-6	3prime_fragment	FALSE	canonical	3	180	junction_1	39.2298303824619	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCAAATGAGTTTGGAT	NA	False	NA	NA	False	AATAAA	-12	NA	41683596	41724435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_41683975_41686722_41686892_41689285_41689449_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
ENSMUSG00000022312.12_1	chr15	-	1249	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	40	6	-29	-6	multi-exon	FALSE	canonical	3	1820	junction_5	77.7200628104822	1121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTTGTGTGTATTT	NA	False	NA	-18	True	AATAAA	-18	NA	51728879	51649959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
ENSMUSG00000022313.11_0	chr15	+	944	3	FSM	ENSMUSG00000022313.11	ENSMUST00000137116.3	2921	3	46	1931	-3	0	multi-exon	FALSE	canonical	3	321	junction_1	13	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGCATCTTCAGTTGTT	NA	False	NA	21	True	AGTAAA	-18	NA	51740870	51746079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_51741107_51744411_51744587_51745546
ENSMUSG00000022314.11_0	chr15	-	3550	14	FSM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	40	366	40	-366	multi-exon	FALSE	canonical	3	565	junction_13	70.6746022859982	1506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATTTTGGAACATACTCA	NA	False	NA	-23	True	AATAAA	-18	NA	51855103	51826001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
ENSMUSG00000022314.11_1	chr15	-	1174	1	ISM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	27968	366	27731	-366	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATTTTGGAACATACTCA	NA	False	NA	-23	True	AATAAA	-18	NA	51827175	51826001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_51826000_51827200
ENSMUSG00000022314.11_2	chr15	-	2838	9	ISM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	18494	366	18257	-366	3prime_fragment	FALSE	canonical	3	643	junction_7	53.2488262781444	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATTTTGGAACATACTCA	NA	False	NA	-23	True	AATAAA	-18	NA	51836649	51826001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481
ENSMUSG00000022322.9_0	chr8	-	2145	13	FSM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	8	3	5	-3	multi-exon	FALSE	canonical	3	204	junction_9	39.0672497112351	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTTGTGTGAAATGTGG	NA	False	NA	-8	True	TATAAA	-12	NA	4829546	4785978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
ENSMUSG00000022322.9_27	chr8	-	950	4	ISM	ENSMUSG00000022322.9	ENSMUST00000208856.2	2365	12	4	28321	4	61	5prime_fragment	FALSE	canonical	3	272	junction_2	23.7205958328763	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTTTACAAAAGATAAAGAA	NA	False	NA	NA	False	ATTAAA	-11	NA	4829547	4814550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_4815090_4817906_4818023_4818143_4818312_4829420
ENSMUSG00000022322.9_4	chr8	-	2612	12	FSM	ENSMUSG00000022322.9	ENSMUST00000208856.2	2365	12	5	-252	5	-2	multi-exon	TRUE	canonical	3	204	junction_8	40.3396734765956	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTGTGTGAAATGTGGA	NA	False	NA	-7	True	TATAAA	-13	NA	4829546	4785977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
ENSMUSG00000022323.12_3	chr15	-	954	6	FSM	ENSMUSG00000022323.12	ENSMUST00000022946.6	1004	6	47	3	-37	0	multi-exon	FALSE	canonical	3	250	junction_4	17.7245592328836	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTGGTTTTTAATTTTG	NA	False	NA	-13	True	AATAAA	-18	NA	34495354	34484169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_34484682_34485745_34485802_34486756_34486826_34487887_34487943_34488719_34488826_34495198
ENSMUSG00000022324.16_0	chr15	+	3248	3	FSM	ENSMUSG00000022324.16	ENSMUST00000226766.2	3252	3	-1	5	-1	-5	multi-exon	FALSE	canonical	0	0	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAACCCTCTTGTCAGCTT	49	False	NA	NA	False	ATTAAA	-17	NA	34306824	34347989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_34307055_34316636_34316802_34345136
ENSMUSG00000022324.16_1	chr15	+	3569	19	FSM	ENSMUSG00000022324.16	ENSMUST00000227759.2	3569	19	-7	7	1	-7	multi-exon	FALSE	canonical	0	0	junction_1	1.0137937550497	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCAGAAAATAGTGTTGA	48	False	NA	NA	False	ATTAAA	-8	NA	34306823	34436377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_34307055_34316636_34316802_34345136_34345707_34355708_34355832_34378800_34378924_34388869_34388993_34399195_34399319_34402980_34403104_34409898_34410022_34410259_34410383_34422487_34422611_34423839_34423963_34426308_34426432_34428579_34428994_34431617_34431771_34432825_34432898_34433178_34433314_34433632_34433732_34435877
ENSMUSG00000022324.16_2	chr15	+	3517	19	FSM	ENSMUSG00000022324.16	ENSMUST00000022947.7	3551	19	-3	37	1	-2	multi-exon	FALSE	canonical	0	0	junction_1	1.03040205505508	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAATAGTGTTGAGTAAA	48	False	NA	NA	False	ATTAAA	-13	NA	34306823	34436382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_34307055_34316636_34316802_34345136_34345707_34355708_34355832_34378800_34378924_34388869_34388993_34399195_34399319_34402980_34403104_34409898_34410022_34410259_34410383_34422487_34422611_34423839_34423963_34426308_34426432_34428579_34428994_34431617_34431771_34432825_34432898_34433235_34433314_34433632_34433732_34435877
ENSMUSG00000022324.16_3	chr15	+	166	1	ISM	ENSMUSG00000022324.16	ENSMUST00000226766.2	3252	3	39106	1897	39101	-1897	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTTTTAAAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	34345931	34346097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_34345900_34346100
ENSMUSG00000022324.16_4	chr15	+	4124	10	ISM	ENSMUSG00000022324.16	ENSMUST00000228570.2	2798	14	-7	16509	1	-16509	5prime_fragment	TRUE	canonical	0	0	junction_1	1.15470053837925	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATCAAGTACAAGTGAGC	48	False	NA	NA	False	AATAAA	-6	NA	34306823	34412679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_34307055_34316636_34316802_34345136_34345707_34355708_34355832_34378800_34378924_34388869_34388993_34399195_34399319_34402980_34403104_34409898_34410022_34410259
ENSMUSG00000022325.15_0	chr15	+	3284	16	FSM	ENSMUSG00000022325.15	ENSMUST00000079028.6	3275	16	0	-9	0	-2	multi-exon	FALSE	canonical	3	39	junction_3	10.1552394796425	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGATGATTTGTTTTTAAT	94	False	NA	7	True	ATTAAA	-17	NA	34495468	34530792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_34495562_34499434_34499579_34502456_34502625_34505104_34505281_34506564_34506814_34508265_34508354_34508749_34508938_34509908_34510166_34510477_34510572_34512059_34512172_34512877_34512998_34515987_34516104_34517972_34518165_34526308_34526464_34529028_34529377_34530008
ENSMUSG00000022325.15_10	chr15	+	2580	12	ISM	ENSMUSG00000022325.15	ENSMUST00000079028.6	3275	16	11219	-9	-3365	-2	3prime_fragment	FALSE	canonical	3	42	junction_6	10.2020902087807	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGATGATTTGTTTTTAAT	NA	False	NA	7	True	ATTAAA	-17	NA	34506687	34530792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_34506814_34508265_34508354_34508749_34508938_34509908_34510166_34510477_34510572_34512059_34512172_34512877_34512998_34515987_34516104_34517972_34518165_34526308_34526464_34529028_34529377_34530008
ENSMUSG00000022325.15_13	chr15	+	2994	3	ISM	ENSMUSG00000022325.15	ENSMUST00000079028.6	3275	16	29128	-4	-1694	4	3prime_fragment	FALSE	canonical	3	55	junction_1	4	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGATGATGATTTGTTT	NA	False	NA	2	True	ATTAAA	-12	NA	34524596	34530787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_34526464_34529028_34529377_34530008
ENSMUSG00000022325.15_7	chr15	+	3077	15	ISM	ENSMUSG00000022325.15	ENSMUST00000079028.6	3275	16	4078	-7	4078	-4	3prime_fragment	FALSE	canonical	3	39	junction_2	10.4226989336364	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGATGATTTGTTTTTA	3299	False	NA	5	True	ATTAAA	-15	NA	34499546	34530790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_34499579_34502456_34502625_34505104_34505281_34506564_34506814_34508265_34508354_34508749_34508938_34509908_34510166_34510477_34510572_34512059_34512172_34512877_34512998_34515987_34516104_34517972_34518165_34526308_34526464_34529028_34529377_34530008
ENSMUSG00000022325.15_9	chr15	+	2767	13	ISM	ENSMUSG00000022325.15	ENSMUST00000079028.6	3275	16	9748	-9	-4836	-2	3prime_fragment	FALSE	canonical	3	42	junction_7	10.3235841106124	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGATGATTTGTTTTTAAT	8969	False	NA	7	True	ATTAAA	-17	NA	34505216	34530792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_34505281_34506564_34506814_34508265_34508354_34508749_34508938_34509908_34510166_34510477_34510572_34512059_34512172_34512877_34512998_34515987_34516104_34517972_34518165_34526308_34526464_34529028_34529377_34530008
ENSMUSG00000022329.16_0	chr15	-	2811	11	FSM	ENSMUSG00000022329.16	ENSMUST00000018476.14	2914	11	99	4	-38	-4	multi-exon	FALSE	canonical	3	204	junction_2	35.5343495789637	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTTGGCGTTGTTGTTA	NA	False	NA	-2	True	AATAAA	-17	NA	35155853	34875645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
ENSMUSG00000022330.6_0	chr15	+	1805	4	NIC	ENSMUSG00000022330.6	novel	1724	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	14.8548533034381	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCTTGAGATTCATC	117	False	NA	12	True	AATAAA	-15	NA	35296243	35303450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_35296614_35300334_35301102_35302057_35302158_35302882
ENSMUSG00000022330.6_1	chr15	+	1721	4	FSM	ENSMUSG00000022330.6	ENSMUST00000022952.6	1724	4	2	1	2	0	multi-exon	FALSE	canonical	3	27	junction_3	10.1434160364686	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCTTGAGATTCATC	119	False	NA	12	True	AATAAA	-15	NA	35296245	35303450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_35296614_35300334_35301102_35302057_35302158_35302964
ENSMUSG00000022330.6_2	chr15	+	954	3	FSM	ENSMUSG00000022330.6	ENSMUST00000228684.2	579	3	-11	-364	2	0	multi-exon	FALSE	canonical	2	8	junction_1	9.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCTTGAGATTCATC	119	False	NA	12	True	AATAAA	-15	NA	35296245	35303450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_35296614_35302057_35302158_35302964
ENSMUSG00000022332.9_0	chr15	+	1898	9	FSM	ENSMUSG00000022332.9	ENSMUST00000022954.7	1887	9	-11	0	-11	0	multi-exon	FALSE	canonical	3	281	junction_5	27.0277635034792	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAATTTTGTGTGTGTG	NA	False	NA	7	True	AATAAA	-7	NA	68800257	68965361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_68800683_68866900_68867020_68885206_68885324_68889176_68889324_68896548_68896689_68901563_68901760_68921227_68921311_68962982_68963042_68964749
ENSMUSG00000022335.18_0	chr15	-	4465	16	NIC	ENSMUSG00000022335.18	novel	4388	16	NA	NA	-17	39	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	5.94194132137525	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAAGCATCTGTGCCT	NA	False	NA	NA	False	AATAAA	-42	NA	68130722	67955573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_67956411_67973319_67973451_67976804_67976929_67982325_67982412_67990784_67990924_68018351_68018441_68037601_68037776_68040563_68040714_68041984_68042073_68050559_68050793_68051565_68053008_68056269_68056421_68058899_68059086_68084441_68084694_68096615_68096793_68130516
ENSMUSG00000022335.18_13	chr15	-	2715	11	ISM	ENSMUSG00000022335.18	ENSMUST00000162054.9	4388	16	78476	-39	78407	39	3prime_fragment	FALSE	canonical	3	24	junction_2	4.07921561087423	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAAGCATCTGTGCCT	NA	False	NA	NA	False	AATAAA	-42	NA	68052229	67955573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_67956411_67973319_67973451_67976804_67976929_67982325_67982412_67990784_67990924_68018351_68018441_68037601_68037776_68040563_68040714_68041984_68042073_68050559_68050793_68051565
ENSMUSG00000022335.18_19	chr15	-	1247	4	ISM	ENSMUSG00000022335.18	ENSMUST00000160248.8	3866	16	-62	102330	-44	-6754	5prime_fragment	FALSE	canonical	3	15	junction_1	5.31245915016974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAGTTTCTATCTATTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	68130749	68058500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_68059086_68084441_68084694_68096615_68096793_68130516
ENSMUSG00000022335.18_4	chr15	-	3372	10	ISM	ENSMUSG00000022335.18	ENSMUST00000162054.9	4388	16	78602	-49	78533	49	intron_retention	FALSE	canonical	3	24	junction_2	4.2716406192758	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGTGCCTGTTCCTTGTC	NA	False	NA	NA	False	AATAAA	-4	NA	68052103	67955563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_67956411_67973319_67973451_67976804_67976929_67982325_67982412_67990784_67990924_68018351_68018441_68037601_68037776_68040563_68040714_68041984_68042073_68050559
ENSMUSG00000022335.18_5	chr15	-	4445	16	FSM	ENSMUSG00000022335.18	ENSMUST00000162054.9	4388	16	-18	-39	-18	39	multi-exon	FALSE	canonical	3	9	junction_13	6.94742158406028	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAAGCATCTGTGCCT	NA	False	NA	NA	False	AATAAA	-42	NA	68130723	67955573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_67956411_67973319_67973451_67976804_67976929_67982325_67982412_67990784_67990924_68018351_68018441_68037601_68037776_68040563_68040714_68041984_68042073_68050559_68050793_68051565_68053008_68056269_68056421_68058899_68059086_68084462_68084694_68096615_68096793_68130516
ENSMUSG00000022336.4_1	chr15	-	1494	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	10	2	10	-2	multi-exon	TRUE	canonical	3	2495	junction_1	136.260065887095	1769	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTTTATTTTGCTTGAA	2673	False	NA	-24	True	AATAAA	-14	NA	43146105	43113455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
ENSMUSG00000022337.8_0	chr15	+	1194	11	FSM	ENSMUSG00000022337.8	ENSMUST00000022962.8	1231	11	36	1	24	-1	multi-exon	FALSE	canonical	3	590	junction_9	74.0384359640315	352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTATGAAAATTCTAGTTT	NA	False	NA	9	True	AATAAA	-19	NA	43340660	43391158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
ENSMUSG00000022338.9_0	chr15	+	2018	4	NIC	ENSMUSG00000022338.9	novel	3000	5	NA	NA	2	0	intron_retention	FALSE	canonical	3	627	junction_1	155.701280948131	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAATTTTTTTATTTTG	9618	False	NA	13	True	AATAAA	-15	NA	44291489	44299263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_44291639_44292955_44293033_44295833_44297370_44299007
ENSMUSG00000022338.9_1	chr15	+	566	5	NIC	ENSMUSG00000022338.9	novel	558	5	NA	NA	1	11	combination_of_known_junctions	FALSE	canonical	3	93	junction_3	380.98777867538	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTTGGAATAAATGGG	9617	False	NA	24	True	AATAAA	-26	NA	44291488	44299274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_44291567_44292955_44293033_44295833_44295905_44297296_44297370_44299007
ENSMUSG00000022338.9_11	chr15	+	3292	3	NIC	ENSMUSG00000022338.9	novel	2708	5	NA	NA	9	0	intron_retention	FALSE	canonical	3	895	junction_1	50.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCAATTTTTTTATTTT	9660	False	NA	12	True	AATAAA	-14	NA	44291531	44299262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_44293033_44295833_44297370_44299007
ENSMUSG00000022338.9_13	chr15	+	654	6	FSM	ENSMUSG00000022338.9	ENSMUST00000228130.2	654	6	-9	9	3	-9	multi-exon	FALSE	canonical	3	35	junction_2	414.684747730128	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAATAAATGGGACTCTGT	9642	False	NA	31	True	AATAAA	-33	NA	44291513	44299281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_44291567_44292955_44293033_44294086_44294191_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000022338.9_14	chr15	+	1450	4	ISM	ENSMUSG00000022338.9	ENSMUST00000226827.2	558	5	496	1	441	0	3prime_fragment	FALSE	canonical	3	895	junction_1	43.5150037981793	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCAATTTTTTTATTTT	NA	False	NA	12	True	AATAAA	-14	NA	44291983	44299262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000022338.9_3	chr15	+	547	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226827.2	558	5	10	1	-6	0	multi-exon	FALSE	canonical	3	313	junction_1	272.243457221657	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCAATTTTTTTATTTT	9626	False	NA	12	True	AATAAA	-14	NA	44291497	44299262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_44291567_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000022338.9_4	chr15	+	1930	4	NIC	ENSMUSG00000022338.9	novel	558	5	NA	NA	1	0	intron_retention	FALSE	canonical	3	313	junction_1	301.000922848345	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCAATTTTTTTATTTT	9633	False	NA	12	True	AATAAA	-14	NA	44291504	44299262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_44291567_44292955_44293033_44295833_44297370_44299007
ENSMUSG00000022338.9_5	chr15	+	595	5	FSM	ENSMUSG00000022338.9	ENSMUST00000060652.5	3000	5	14	2391	-2	-1	multi-exon	FALSE	canonical	3	627	junction_1	138.867742834684	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTCAATTTTTTTATTT	9649	False	NA	11	True	AATAAA	-13	NA	44291520	44299261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000022338.9_6	chr15	+	603	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226336.2	2547	5	1	1943	1	0	multi-exon	FALSE	canonical	3	93	junction_3	350.174510066053	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCAATTTTTTTATTTT	9640	False	NA	12	True	AATAAA	-14	NA	44291511	44299262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297296_44297370_44299007
ENSMUSG00000022339.10_0	chr15	+	1453	7	FSM	ENSMUSG00000022339.10	ENSMUST00000227691.2	1945	7	1	491	1	-2	multi-exon	FALSE	canonical	3	53	junction_1	13.0894359440479	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTTGTATATCCTTA	NA	False	NA	10	True	ATTAAA	-20	NA	44482571	44504420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_44482766_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ENSMUSG00000022339.10_1	chr15	+	1591	7	FSM	ENSMUSG00000022339.10	ENSMUST00000226165.2	1931	7	133	207	-18	-5	multi-exon	FALSE	canonical	2	3	junction_1	30.3076814612328	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAATATTTTGTATATCC	NA	False	NA	7	True	ATTAAA	-17	NA	44482968	44504417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_44483304_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ENSMUSG00000022339.10_3	chr15	+	1600	7	FSM	ENSMUSG00000022339.10	ENSMUST00000022964.9	1613	7	8	5	8	-5	multi-exon	FALSE	canonical	3	4	junction_1	29.9467119322899	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAATATTTTGTATATCC	NA	False	NA	7	True	ATTAAA	-17	NA	44482994	44504417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_44483339_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ENSMUSG00000022339.10_5	chr15	+	1262	6	ISM	ENSMUSG00000022339.10	ENSMUST00000022964.9	1613	7	4849	2	4849	-2	3prime_fragment	FALSE	canonical	3	68	junction_3	8.20731381147328	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTTGTATATCCTTA	NA	False	NA	10	True	ATTAAA	-20	NA	44487835	44504420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ENSMUSG00000022342.7_0	chr15	-	2730	3	FSM	ENSMUSG00000022342.7	ENSMUST00000022967.7	4389	3	144	1515	144	-1515	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAATGTTACTCTCCCT	NA	False	NA	NA	False	AATAAA	-34	NA	44978079	44971194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_44972882_44976285_44976816_44977566
ENSMUSG00000022346.18_1	chr15	+	2161	3	FSM	ENSMUSG00000022346.18	ENSMUST00000161976.8	2338	3	160	17	-13	-17	multi-exon	FALSE	canonical	3	22	junction_2	2	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAAATAATTGGA	NA	False	NA	NA	False	TTTAAA	-44	NA	61857399	61862182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_61857801_61859355_61860128_61861194
ENSMUSG00000022346.18_2	chr15	+	2158	3	FSM	ENSMUSG00000022346.18	ENSMUST00000159327.2	2186	3	-13	41	-13	-17	multi-exon	FALSE	canonical	3	8	junction_1	7	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAAATAATTGGA	NA	False	NA	NA	False	TTTAAA	-44	NA	61857399	61862182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_61857801_61859358_61860128_61861194
ENSMUSG00000022346.18_3	chr15	+	2219	2	FSM	ENSMUSG00000022346.18	ENSMUST00000160009.2	1765	2	-367	-87	21	-10	multi-exon	FALSE	canonical	3	22	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAATAATTGGAAAAAATA	NA	False	NA	NA	False	TTTAAA	-33	NA	61858903	61862189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_61860128_61861194
ENSMUSG00000022350.8_0	chr15	-	4047	29	FSM	ENSMUSG00000022350.8	ENSMUST00000022976.6	4033	29	-18	4	-18	-4	multi-exon	FALSE	canonical	3	371	junction_18	44.6203943487363	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACTGAGTTGCCCTGCTT	NA	False	NA	-7	True	AGTAAA	-12	NA	59246034	59203849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_59204209_59205466_59205555_59206936_59207091_59209041_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111_59231284_59232971_59233086_59235042_59235196_59238011_59238205_59239243_59239345_59240224_59240310_59241001_59241148_59241728_59242035_59245889
ENSMUSG00000022350.8_3	chr15	-	4248	30	NNC	ENSMUSG00000022350.8	novel	4033	29	NA	NA	-16	787	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.1580698835967	108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACCAAAAGAACATAAG	NA	False	NA	NA	False	TATAAA	-13	NA	59246032	59203058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_59203228_59203815_59204209_59205466_59205555_59206936_59207091_59209041_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111_59231284_59232971_59233086_59235042_59235196_59238011_59238205_59239243_59239345_59240224_59240310_59241001_59241148_59241728_59242035_59245889
ENSMUSG00000022351.15_0	chr15	+	2776	11	FSM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	-19	1	-15	-1	multi-exon	FALSE	canonical	3	657	junction_1	53.8835782033822	1440	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTCTTTTGGTTTTTGT	NA	False	NA	12	True	AATAAA	-17	NA	59186910	59203040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
ENSMUSG00000022353.11_1	chr15	-	1839	1	ISM	ENSMUSG00000022353.11	ENSMUST00000080371.8	4938	15	138907	10	10498	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAAAGAGTTCTCAGGT	8706	False	NA	NA	False	AATAAA	-9	NA	58814931	58813092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_58813100_58814900
ENSMUSG00000022353.11_14	chr15	-	3028	14	NNC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	-55	-6	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	15.5323674264364	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAACCTTGATCTTTTAA	2674	False	NA	-4	True	ATTAAA	-18	NA	58953909	58815096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_58815980_58817165_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
ENSMUSG00000022353.11_2	chr15	-	2977	14	NIC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	-49	-6	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	8.88386610227084	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAACCTTGATCTTTTAA	2680	False	NA	-4	True	ATTAAA	-18	NA	58953903	58815096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_58815980_58817210_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
ENSMUSG00000022353.11_9	chr15	-	2784	13	NIC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	-51	-6	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	20.5324945716134	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAACCTTGATCTTTTAA	2678	False	NA	-4	True	ATTAAA	-18	NA	58953905	58815096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_58815980_58817210_58817374_58817694_58817869_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
ENSMUSG00000022354.5_0	chr15	+	653	4	FSM	ENSMUSG00000022354.5	ENSMUST00000022980.5	704	4	53	-2	1	2	multi-exon	FALSE	canonical	3	3308	junction_3	178.75557489364	833	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTGCCTGAAGTGTTC	2869	False	NA	15	True	AATAAA	-16	NA	58805657	58811339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_58805788_58808116_58808310_58809200_58809315_58811123
ENSMUSG00000022358.8_0	chr15	-	2730	9	FSM	ENSMUSG00000022358.8	ENSMUST00000022986.8	6976	9	38	4208	38	-4208	multi-exon	FALSE	canonical	0	0	junction_1	0.7806247497998	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAGCAGAAATAGGAAT	NA	False	NA	NA	False	AATAAA	-25	NA	58078290	58043482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_58044952_58046230_58046375_58047477_58047661_58054680_58054866_58055666_58055761_58068608_58068702_58069594_58069645_58071350_58071464_58077891
ENSMUSG00000022359.11_1	chr15	+	1381	6	NIC	ENSMUSG00000022359.11	novel	1383	6	NA	NA	2	-8	combination_of_known_junctions	FALSE	canonical	3	26	junction_2	16.2283702200806	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAATTTTGCTTTTGA	2662	False	NA	19	True	AATAAA	-9	NA	58004774	58022042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_58004978_58011729_58011838_58014001_58014053_58015992_58016142_58016975_58017101_58021297
ENSMUSG00000022359.11_2	chr15	+	1371	6	FSM	ENSMUSG00000022359.11	ENSMUST00000067563.9	1383	6	-1	13	-1	-13	multi-exon	FALSE	canonical	3	37	junction_4	11.5516232625549	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTAAAATTAATTTTGCT	2659	False	NA	14	True	AATAAA	-4	NA	58004771	58022037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58021297
ENSMUSG00000022359.11_3	chr15	+	1221	5	FSM	ENSMUSG00000022359.11	ENSMUST00000228761.2	798	5	-15	-408	0	-13	multi-exon	FALSE	canonical	3	22	junction_3	18.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTAAAATTAATTTTGCT	2660	False	NA	14	True	AATAAA	-4	NA	58004772	58022037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58016975_58017101_58021297
ENSMUSG00000022359.11_4	chr15	+	1233	5	NIC	ENSMUSG00000022359.11	novel	798	5	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	21.3131414859471	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAATTTTGCTTTTGA	2661	False	NA	19	True	AATAAA	-9	NA	58004773	58022042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_58004978_58011729_58011838_58014001_58014053_58016975_58017101_58021297
ENSMUSG00000022360.9_2	chr15	-	5661	28	FSM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	15	8	15	-8	multi-exon	TRUE	canonical	3	283	junction_25	31.7407623492731	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGTTACTCGTTTCTA	NA	False	NA	-19	True	AATAAA	-12	NA	57998463	57957449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_57958968_57959972_57960102_57960647_57960782_57961754_57962145_57963106_57963251_57963362_57963486_57965772_57965933_57966593_57966791_57967826_57967963_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
ENSMUSG00000022360.9_5	chr15	-	190	1	ISM	ENSMUSG00000022360.9	ENSMUST00000226649.2	2209	4	4540	3	4540	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTCGTTTCTAGTTCTTG	NA	False	NA	-12	True	AATAAA	-19	NA	57957632	57957442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_57957400_57957600
ENSMUSG00000022361.15_0	chr15	-	4729	4	FSM	ENSMUSG00000022361.15	ENSMUST00000070143.13	4764	4	28	7	28	-7	multi-exon	FALSE	canonical	3	28	junction_2	5.18544972870135	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCATTGCTAATGTGGT	NA	False	NA	-8	True	ATTAAA	-14	NA	57939837	57910707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_57912182_57915619_57918479_57932714_57932826_57939552
ENSMUSG00000022361.15_1	chr15	-	3434	2	ISM	ENSMUSG00000022361.15	ENSMUST00000070143.13	4764	4	22292	1	22037	-1	3prime_fragment	FALSE	canonical	3	39	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCTAATGTGGTCTGAGT	NA	False	NA	-2	True	ATTAAA	-20	NA	57917573	57910701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_57912182_57915619
ENSMUSG00000022361.15_2	chr15	-	4858	5	FSM	ENSMUSG00000022361.15	ENSMUST00000110168.8	5212	5	45	309	25	-7	multi-exon	FALSE	canonical	1	2	junction_2	17.7816619020833	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCATTGCTAATGTGGT	NA	False	NA	-8	True	ATTAAA	-14	NA	57939840	57910707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_57912182_57915619_57918479_57927450_57927577_57932714_57932826_57939552
ENSMUSG00000022361.15_4	chr15	-	1478	1	ISM	ENSMUSG00000022361.15	ENSMUST00000175805.9	4839	3	27752	13	27721	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATAATGGGCTCTTTTG	1020	False	NA	NA	False	AATAAA	-5	NA	57911889	57910411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_57910400_57911900
ENSMUSG00000022364.15_0	chr15	+	3262	21	FSM	ENSMUSG00000022364.15	ENSMUST00000022992.13	3311	21	44	5	4	-5	multi-exon	FALSE	canonical	3	200	junction_2	36.9403234961471	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTATCAAAGCTGAACTG	NA	False	NA	3	True	AATAAA	-10	NA	57775638	57833452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
ENSMUSG00000022364.15_11	chr15	+	3540	17	ISM	ENSMUSG00000022364.15	ENSMUST00000110175.9	3468	18	9	4	4	-4	intron_retention	FALSE	canonical	3	200	junction_2	25.2003689209107	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTACCTTTTCTGCATGTA	NA	False	NA	-2	True	AATAAA	-12	NA	57775638	57822794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732
ENSMUSG00000022364.15_17	chr15	+	3147	20	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	3	-5	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	59.3076396586785	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTATCAAAGCTGAACTG	NA	False	NA	3	True	AATAAA	-10	NA	57775637	57833452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_57775788_57779365_57779513_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
ENSMUSG00000022364.15_4	chr15	+	3464	22	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	3	77	junction_18	60.8888806130719	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTATCAAAGCTGAACTG	NA	False	NA	3	True	AATAAA	-10	NA	57775631	57833452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57831304_57831401_57833119
ENSMUSG00000022364.15_7	chr15	+	3173	20	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	2	-5	combination_of_known_splicesites	FALSE	canonical	3	57	junction_19	47.7117383072465	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTATCAAAGCTGAACTG	NA	False	NA	3	True	AATAAA	-10	NA	57775631	57833452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57833119
ENSMUSG00000022364.15_79	chr15	+	2553	16	ISM	ENSMUSG00000022364.15	ENSMUST00000022992.13	3311	21	23858	5	20044	-5	3prime_fragment	FALSE	canonical	3	200	junction_4	37.4619214076848	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTATCAAAGCTGAACTG	NA	False	NA	3	True	AATAAA	-10	NA	57799452	57833452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
ENSMUSG00000022365.7_0	chr15	-	2902	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	-4	277	-4	-277	multi-exon	TRUE	canonical	3	365	junction_5	42.5977866628236	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGAAGGCTGTCTGTGT	NA	False	NA	-11	True	ATTAAA	-7	NA	57755848	57733174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
ENSMUSG00000022365.7_3	chr15	-	1879	1	ISM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	20795	273	18741	-273	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGCTGTCTGTGTTAAG	NA	False	NA	-7	True	ATTAAA	-11	NA	57735049	57733170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_57733200_57735000
ENSMUSG00000022369.14_0	chr15	+	2953	22	FSM	ENSMUSG00000022369.14	ENSMUST00000022998.14	3144	22	187	4	0	-2	multi-exon	FALSE	canonical	3	131	junction_14	23.9707872097639	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTTCTTGGATTGCATG	NA	False	NA	NA	False	AATAAA	-13	NA	55420990	55489815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
ENSMUSG00000022370.14_1	chr15	-	791	7	FSM	ENSMUSG00000022370.14	ENSMUST00000172387.8	1223	7	430	2	31	-2	multi-exon	FALSE	canonical	3	905	junction_4	55.6070039553372	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCAATGTCTCTTACTGA	NA	False	NA	-2	True	AATAAA	-18	NA	55420714	55397491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653
ENSMUSG00000022370.14_3	chr15	-	700	6	FSM	ENSMUSG00000022370.14	ENSMUST00000164542.8	730	6	29	1	29	-1	multi-exon	FALSE	canonical	3	91	junction_4	366.126754007407	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAATGTCTCTTACTGAA	NA	False	NA	-1	True	AATAAA	-19	NA	55420716	55397490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55418715_55418840_55420653
ENSMUSG00000022377.17_0	chr15	-	4475	28	FSM	ENSMUSG00000022377.17	ENSMUST00000177371.8	6164	28	5	1684	5	0	multi-exon	TRUE	canonical	3	82	junction_19	14.5305128081956	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCTTGTTTCTGGTC	NA	False	NA	-3	True	ATTAAA	-20	NA	64184517	63960389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030730_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197
ENSMUSG00000022377.17_13	chr15	-	4439	28	FSM	ENSMUSG00000022377.17	ENSMUST00000177083.8	4415	28	-29	5	5	0	multi-exon	FALSE	canonical	3	46	junction_19	18.359240953674	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCTTGTTTCTGGTC	NA	False	NA	-3	True	ATTAAA	-20	NA	64184517	63960389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030766_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197
ENSMUSG00000022377.17_14	chr15	-	4293	27	ISM	ENSMUSG00000022377.17	ENSMUST00000177035.8	3228	28	37193	-906	-20	0	3prime_fragment	FALSE	canonical	3	36	junction_5	23.2403508003955	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCTTGTTTCTGGTC	NA	False	NA	-3	True	ATTAAA	-20	NA	64184542	63960389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030766_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197
ENSMUSG00000022377.17_4	chr15	-	4434	30	NIC	ENSMUSG00000022377.17	novel	4580	31	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_28	23.6466758642573	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCTTGTTTCTGGTC	NA	False	NA	-3	True	ATTAAA	-20	NA	64254631	63960389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030730_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197_64184325_64221676_64221763_64254565
ENSMUSG00000022377.17_6	chr15	-	2187	1	ISM	ENSMUSG00000022377.17	ENSMUST00000177371.8	6164	28	223625	5	13494	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCAAGCATCTGACATCA	2775	False	NA	-13	True	AATAAA	-15	NA	63960897	63958710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_63958700_63960900
ENSMUSG00000022377.17_7	chr15	-	4304	27	ISM	ENSMUSG00000022377.17	ENSMUST00000175799.8	4237	29	70088	0	5	0	3prime_fragment	FALSE	canonical	3	36	junction_5	20.3393183224631	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCTTGTTTCTGGTC	NA	False	NA	-3	True	ATTAAA	-20	NA	64184517	63960389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030730_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197
ENSMUSG00000022377.17_8	chr15	-	4437	30	FSM	ENSMUSG00000022377.17	ENSMUST00000110115.9	4535	30	98	0	-65	0	multi-exon	FALSE	canonical	3	31	junction_28	25.7623364351316	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCTTGTTTCTGGTC	NA	False	NA	-3	True	ATTAAA	-20	NA	64254670	63960389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030766_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197_64184325_64221676_64221763_64254565
ENSMUSG00000022378.15_0	chr15	-	2037	13	FSM	ENSMUSG00000022378.15	ENSMUST00000228226.2	1896	13	-141	0	-6	0	multi-exon	FALSE	canonical	3	743	junction_12	159.721024150096	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	NA	False	NA	-6	True	AATAAA	-20	NA	63932333	63802792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932043
ENSMUSG00000022378.15_1	chr15	-	2122	14	NIC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_10	363.626149130341	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	NA	False	NA	-6	True	AATAAA	-20	NA	63932335	63802792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63829433_63829517_63842778_63842818_63894418_63894470_63932043
ENSMUSG00000022378.15_14	chr15	-	1999	12	NIC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	-8	-1	combination_of_known_splicesites	FALSE	canonical	3	50	junction_10	331.600900217103	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTGGCTTGGTTTACT	NA	False	NA	-7	True	AATAAA	-19	NA	63932335	63802793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63894418_63894470_63932043
ENSMUSG00000022378.15_2	chr15	-	1882	12	FSM	ENSMUSG00000022378.15	ENSMUST00000164532.3	1770	12	-114	2	-114	0	multi-exon	FALSE	canonical	3	316	junction_11	247.062410558028	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	8625	False	NA	-6	True	AATAAA	-20	NA	63869932	63802792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63869746
ENSMUSG00000022378.15_42	chr15	-	1966	13	NIC	ENSMUSG00000022378.15	novel	1770	12	NA	NA	-116	-1	combination_of_known_junctions	FALSE	canonical	3	121	junction_10	411.541310198624	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTGGCTTGGTTTACT	8623	False	NA	-7	True	AATAAA	-19	NA	63869934	63802793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63829433_63829517_63842778_63842818_63869746
ENSMUSG00000022378.15_5	chr15	-	2002	12	FSM	ENSMUSG00000022378.15	ENSMUST00000063838.11	3797	12	-52	1847	-22	0	multi-exon	FALSE	canonical	3	62	junction_11	317.474070002523	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	NA	False	NA	-6	True	AATAAA	-20	NA	63932349	63802792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63932043
ENSMUSG00000022378.15_7	chr15	-	1843	11	NIC	ENSMUSG00000022378.15	novel	1770	12	NA	NA	-114	0	combination_of_known_splicesites	FALSE	canonical	3	52	junction_10	335.160260174144	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	8625	False	NA	-6	True	AATAAA	-20	NA	63869932	63802792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63869746
ENSMUSG00000022382.16_0	chr15	-	3452	4	FSM	ENSMUSG00000022382.16	ENSMUST00000109424.4	3134	4	-326	8	-87	2	multi-exon	FALSE	canonical	1	1	junction_1	2.86744175568088	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAAGTGTGTGTGACG	NA	False	NA	NA	False	AATAAA	-13	NA	85466109	85419645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_85422070_85427869_85428142_85443103_85443331_85465580
ENSMUSG00000022382.16_1	chr15	-	3386	4	FSM	ENSMUSG00000022382.16	ENSMUST00000023015.15	3365	4	-31	10	-31	-4	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAGAAAAGCAAGTGTGT	NA	False	NA	NA	False	AATAAA	-7	NA	85466053	85419651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_85422070_85427869_85428142_85443107_85443331_85465580
ENSMUSG00000022382.16_2	chr15	-	1603	1	ISM	ENSMUSG00000022382.16	ENSMUST00000109424.4	3134	4	44534	9	29974	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGCAAGTGTGTGTGAC	NA	False	NA	NA	False	AATAAA	-12	NA	85421249	85419646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_85419600_85421200
ENSMUSG00000022382.16_5	chr15	-	2538	2	ISM	ENSMUSG00000022382.16	ENSMUST00000229191.2	2521	4	34282	-959	23234	-4	3prime_fragment	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAGAAAAGCAAGTGTGT	NA	False	NA	NA	False	AATAAA	-7	NA	85427989	85419651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_85422070_85427869
ENSMUSG00000022385.12_0	chr15	+	2698	12	FSM	ENSMUSG00000022385.12	ENSMUST00000170629.3	2641	12	-17	-40	-17	-3	multi-exon	FALSE	canonical	3	528	junction_1	58.9672832668062	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATTTGGACGTGTAGAG	7120	False	NA	27	True	ATTAAA	-38	NA	85743928	85760771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
ENSMUSG00000022385.12_25	chr15	+	2632	11	FSM	ENSMUSG00000022385.12	ENSMUST00000231074.2	2692	11	57	3	57	-3	multi-exon	FALSE	canonical	3	556	junction_6	54.9377829913076	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATTTGGACGTGTAGAG	7395	False	NA	27	True	ATTAAA	-38	NA	85744203	85760771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
ENSMUSG00000022386.13_1	chr15	+	1517	11	FSM	ENSMUSG00000022386.13	ENSMUST00000023019.12	1526	11	9	0	9	0	multi-exon	FALSE	canonical	3	28	junction_4	10.36532681588	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATGTGTCTGGGGCTTG	NA	False	NA	NA	False	AATAAA	-14	NA	85763529	85781593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776767_85776941_85778026_85778081_85778154_85778222_85779126_85779228_85780560_85780706_85781035_85781119_85781225
ENSMUSG00000022386.13_11	chr15	+	1446	11	NIC	ENSMUSG00000022386.13	novel	1526	11	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	15.6745015869724	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATGTGTCTGGGGCTTG	NA	False	NA	NA	False	AATAAA	-14	NA	85763545	85781593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776822_85776941_85778026_85778081_85778154_85778222_85779126_85779228_85780560_85780706_85781035_85781119_85781225
ENSMUSG00000022386.13_13	chr15	+	2489	9	NIC	ENSMUSG00000022386.13	novel	1526	11	NA	NA	15	-1	intron_retention	FALSE	canonical	3	28	junction_4	9.2736184954957	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCATGTGTCTGGGGCTT	NA	False	NA	NA	False	AATAAA	-13	NA	85763535	85781592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776767_85776941_85778026_85779228_85780560_85780706_85781035_85781119_85781225
ENSMUSG00000022386.13_18	chr15	+	3802	8	NIC	ENSMUSG00000022386.13	novel	1526	11	NA	NA	-24	1	intron_retention	FALSE	canonical	3	28	junction_4	9.55969429961235	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGTGTCTGGGGCTTGC	NA	False	NA	NA	False	AATAAA	-15	NA	85763557	85781594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776767_85776941_85778026_85780706_85781035_85781119_85781225
ENSMUSG00000022386.13_19	chr15	+	3747	8	NIC	ENSMUSG00000022386.13	novel	1526	11	NA	NA	-25	0	intron_retention	FALSE	canonical	2	3	junction_4	17.3369959500321	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATGTGTCTGGGGCTTG	NA	False	NA	NA	False	AATAAA	-14	NA	85763556	85781593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776822_85776941_85778026_85780706_85781035_85781119_85781225
ENSMUSG00000022386.13_4	chr15	+	1698	11	NIC	ENSMUSG00000022386.13	novel	1526	11	NA	NA	7	-1	intron_retention	FALSE	canonical	3	7	junction_6	17.8504901893477	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCATGTGTCTGGGGCTT	NA	False	NA	NA	False	AATAAA	-13	NA	85763527	85781592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776767_85776941_85778026_85778222_85778378_85778485_85779126_85779228_85780560_85780706_85781035_85781119_85781225
ENSMUSG00000022386.13_8	chr15	+	1527	10	NIC	ENSMUSG00000022386.13	novel	1526	11	NA	NA	17	-1	intron_retention	FALSE	canonical	2	3	junction_4	16.2237442208391	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCATGTGTCTGGGGCTT	NA	False	NA	NA	False	AATAAA	-13	NA	85763537	85781592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776822_85776941_85778026_85778222_85779126_85779228_85780560_85780706_85781035_85781119_85781225
ENSMUSG00000022387.18_1	chr15	-	4746	13	NIC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	7	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	187.247756254173	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTTTGTCCCGTGTTT	NA	False	NA	-8	True	NA	NA	NA	88618426	88571239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88596818_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526_88614908_88618131
ENSMUSG00000022387.18_4	chr15	-	4880	13	FSM	ENSMUSG00000022387.18	ENSMUST00000109381.9	5152	13	10	262	7	-262	multi-exon	FALSE	canonical	0	0	junction_12	202.393524819568	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCTCTCATTCCTGCAT	NA	False	NA	-2	True	AATAAA	-19	NA	88618426	88571498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88596818_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526_88614908_88618131
ENSMUSG00000022387.18_6	chr15	-	2474	6	ISM	ENSMUSG00000022387.18	ENSMUST00000109380.8	3259	12	29499	-1260	-408	-2	3prime_fragment	FALSE	canonical	3	571	junction_1	43.1212244724103	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTTGTCCCGTGTTTG	NA	False	NA	-7	True	NA	NA	NA	88585475	88571238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975
ENSMUSG00000022387.18_9	chr15	-	3828	12	FSM	ENSMUSG00000022387.18	ENSMUST00000109380.8	3259	12	690	-1259	690	-3	multi-exon	FALSE	canonical	3	347	junction_6	96.407622893971	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTTTGTCCCGTGTTT	NA	False	NA	-8	True	NA	NA	NA	88614284	88571239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88596818_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526
ENSMUSG00000022387.18_95	chr15	-	4115	6	ISM	ENSMUSG00000022387.18	ENSMUST00000088911.4	4702	8	7	12057	7	1992	5prime_fragment	FALSE	canonical	0	0	junction_5	248.421094112396	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAAGGAAAGTAATAATG	NA	False	NA	1	True	AATAAA	-22	NA	88618426	88595110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526_88614908_88618131
ENSMUSG00000022389.16_0	chr15	+	4107	4	FSM	ENSMUSG00000022389.16	ENSMUST00000109553.10	4403	4	289	7	3	-7	multi-exon	FALSE	canonical	2	3	junction_1	32.8870119584549	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAGAACTTGGCAGTGGTC	NA	False	NA	10	True	ATTAAA	-10	NA	81686910	81711057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81687088_81699144_81699463_81705399_81705621_81707666
ENSMUSG00000022389.16_2	chr15	+	4179	4	FSM	ENSMUSG00000022389.16	ENSMUST00000023024.8	4079	4	58	-158	58	-7	multi-exon	FALSE	canonical	3	69	junction_3	7.84573486395988	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAGAACTTGGCAGTGGTC	NA	False	NA	10	True	ATTAAA	-10	NA	81695672	81711057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81695922_81699144_81699463_81705399_81705621_81707666
ENSMUSG00000022389.16_8	chr15	+	3734	2	FSM	ENSMUSG00000022389.16	ENSMUST00000168632.2	791	2	137	-3080	137	-4	multi-exon	FALSE	canonical	3	69	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTTGGCAGTGGTCTTT	NA	False	NA	13	True	ATTAAA	-13	NA	81705280	81711060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81705621_81707666
ENSMUSG00000022389.16_9	chr15	+	2758	1	ISM	ENSMUSG00000022389.16	ENSMUST00000109553.10	4403	4	21680	5	3158	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAACTTGGCAGTGGTCTT	NA	False	NA	12	True	ATTAAA	-12	NA	81708301	81711059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81708300_81711100
ENSMUSG00000022390.12_1	chr15	+	5714	23	FSM	ENSMUSG00000022390.12	ENSMUST00000109554.3	5740	23	21	5	21	-5	multi-exon	FALSE	canonical	3	112	junction_21	52.4698457282257	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCTTCTTTTAGCCTTT	1969	False	NA	-1	True	AATAAA	-10	NA	81629278	81680456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81629548_81652195_81652255_81653033_81653068_81653184_81653383_81655938_81656098_81656628_81656710_81657486_81657544_81660006_81660050_81660478_81660673_81660981_81661304_81662073_81662133_81662810_81662911_81663309_81663472_81664604_81664811_81666159_81666261_81667225_81667408_81670082_81670169_81676132_81676267_81676430_81676537_81676663_81676773_81676980_81677115_81677220_81677385_81677701
ENSMUSG00000022390.12_3	chr15	+	2336	18	NNC	ENSMUSG00000022390.12	novel	5740	23	NA	NA	18	2184	at_least_one_novel_splicesite	TRUE	canonical	3	50	junction_17	51.2595674249711	115	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAATAGGGCATGATGGCA	1966	False	NA	NA	False	NA	NA	NA	81629275	81670841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_81629548_81652195_81652255_81653033_81653068_81653184_81653383_81655938_81656098_81656628_81656710_81657486_81657544_81660006_81660050_81660478_81660673_81660981_81661304_81662073_81662133_81662810_81662911_81663309_81663472_81664604_81664811_81666159_81666261_81667225_81667408_81670082_81670169_81670820
ENSMUSG00000022390.12_38	chr15	+	2260	1	ISM	ENSMUSG00000022390.12	ENSMUST00000109554.3	5740	23	48942	2	15332	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTCTTTTAGCCTTTGTT	NA	False	NA	2	True	AATAAA	-13	NA	81678199	81680459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81678200_81680500
ENSMUSG00000022391.17_0	chr15	-	2898	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	132	3	9	-3	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	1654	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGGCCCGGAAGCTTCT	NA	False	NA	-12	True	AATAAA	-17	NA	81614072	81588456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
ENSMUSG00000022394.15_0	chr15	+	3427	17	FSM	ENSMUSG00000022394.15	ENSMUST00000023029.15	3487	17	50	10	5	0	multi-exon	FALSE	canonical	3	631	junction_15	40.713125570877	1518	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAACAATGTGATGATA	NA	False	NA	7	True	AATAAA	-14	NA	81548139	81572506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
ENSMUSG00000022400.10_0	chr15	+	511	5	FSM	ENSMUSG00000022400.10	ENSMUST00000023036.7	1675	5	55	1109	7	-126	multi-exon	FALSE	canonical	3	4160	junction_1	231.400491572512	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGGTTGCTGTTTCATGT	NA	False	NA	14	True	AATAAA	-14	NA	81350551	81359461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUSG00000022400.10_8	chr15	+	476	5	FSM	ENSMUSG00000022400.10	ENSMUST00000230062.2	651	5	49	126	49	-126	multi-exon	FALSE	canonical	3	348	junction_1	1851.90407081468	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGGTTGCTGTTTCATGT	NA	False	NA	14	True	AATAAA	-14	NA	81350890	81359461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81350956_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUSG00000022401.13_0	chr15	+	6024	10	FSM	ENSMUSG00000022401.13	ENSMUST00000163754.9	6058	10	13	21	1	-21	multi-exon	FALSE	canonical	3	30	junction_9	9.02397355744309	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAACAATACCGAGTGGT	NA	False	NA	3	True	AATATA	-3	NA	81284351	81341662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81284489_81298632_81298750_81311476_81311885_81314890_81315094_81320914_81320978_81322267_81322382_81326579_81326666_81332519_81332698_81335101_81335223_81337065
ENSMUSG00000022401.13_11	chr15	+	6173	11	NIC	ENSMUSG00000022401.13	novel	1641	11	NA	NA	0	-21	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	16.5060594934103	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAACAATACCGAGTGGT	NA	False	NA	3	True	AATATA	-3	NA	81284350	81341662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_81284489_81298632_81298750_81300047_81300196_81311476_81311885_81314890_81315094_81320914_81320978_81322267_81322382_81326579_81326666_81332519_81332698_81335101_81335223_81337065
ENSMUSG00000022401.13_13	chr15	+	2910	1	ISM	ENSMUSG00000022401.13	ENSMUST00000163754.9	6058	10	54416	19	54357	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAATACCGAGTGGTCT	NA	False	NA	5	True	AATATA	-5	NA	81338754	81341664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81338800_81341700
ENSMUSG00000022403.16_0	chr15	-	1920	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	360	1066	-89	715	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	2838	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAAAAGAGTGCTTTCT	NA	False	NA	-8	True	AATAAA	-22	NA	81283884	81248935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
ENSMUSG00000022404.9_0	chr15	-	1667	9	FSM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	45	12	6	-12	multi-exon	FALSE	canonical	3	302	junction_6	19.7638400873919	287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAAACATTCATGAAAG	6893	False	NA	-22	True	AATAAA	-15	NA	81244968	81203123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
ENSMUSG00000022407.11_3	chr15	+	1854	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	30	1827	1	0	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	1197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAACAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	80832720	80853320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
ENSMUSG00000022408.8_0	chr15	+	1857	4	ISM	ENSMUSG00000022408.8	ENSMUST00000023044.7	2993	5	11	7478	11	-7478	5prime_fragment	FALSE	canonical	0	0	junction_2	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGCCACCTTGTTCCT	NA	False	NA	NA	False	AATAAA	-16	NA	80556058	80577148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_80556589_80574117_80574286_80574733_80574856_80576111
ENSMUSG00000022412.15_10	chr15	+	4986	6	FSM	ENSMUSG00000022412.15	ENSMUST00000228788.3	4394	6	-12	-580	-4	-5	multi-exon	FALSE	canonical	3	57	junction_4	71.0785480999718	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTCTGACGTGTCTAT	2824	False	NA	11	True	AATAAA	-13	NA	80118289	80137567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132527_80132705_80133529
ENSMUSG00000022412.15_13	chr15	+	5040	7	NNC	ENSMUSG00000022412.15	novel	5148	6	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_6	65.64149263656	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTCTGACGTGTCTAT	2829	False	NA	11	True	AATAAA	-13	NA	80118294	80137567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529_80135053_80135079
ENSMUSG00000022412.15_20	chr15	+	5166	7	ISM	ENSMUSG00000022412.15	ENSMUST00000229138.2	4097	8	14	-17	1	-5	intron_retention	FALSE	canonical	3	52	junction_1	78.4488509936393	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTCTGACGTGTCTAT	2829	False	NA	11	True	AATAAA	-13	NA	80118294	80137567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_80118383_80118882_80118982_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
ENSMUSG00000022412.15_3	chr15	+	5067	6	FSM	ENSMUSG00000022412.15	ENSMUST00000023048.12	5148	6	76	5	1	-5	multi-exon	FALSE	canonical	3	146	junction_1	35.3361005205724	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTCTGACGTGTCTAT	2829	False	NA	11	True	AATAAA	-13	NA	80118294	80137567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
ENSMUSG00000022412.15_74	chr15	+	2306	1	ISM	ENSMUSG00000022412.15	ENSMUST00000023048.12	5148	6	17043	5	3430	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTCTGACGTGTCTAT	22	False	NA	11	True	AATAAA	-13	NA	80135261	80137567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_80135300_80137600
ENSMUSG00000022412.15_8	chr15	+	5081	7	NIC	ENSMUSG00000022412.15	novel	4097	8	NA	NA	0	-5	intron_retention	FALSE	canonical	3	52	junction_1	85.8344660119439	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTCTGACGTGTCTAT	2828	False	NA	11	True	AATAAA	-13	NA	80118293	80137567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_80118383_80118882_80118982_80120005_80120355_80130937_80131089_80132074_80132253_80132527_80132705_80133529
ENSMUSG00000022414.9_1	chr15	+	4218	9	NIC	ENSMUSG00000022414.9	novel	2964	11	NA	NA	0	-10	intron_retention	FALSE	canonical	3	54	junction_1	6.76387462923434	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAGTAAAGATGTCATCT	4993	False	NA	5	True	AATAGA	-13	NA	80017327	80045898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_80017390_80032427_80034070_80034627_80034767_80036865_80036980_80037832_80037945_80039957_80040103_80041804_80042028_80042951_80043109_80044274
ENSMUSG00000022414.9_15	chr15	+	5278	9	NIC	ENSMUSG00000022414.9	novel	2964	11	NA	NA	13007	-10	intron_retention	FALSE	canonical	3	51	junction_1	7.38981562692873	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAGTAAAGATGTCATCT	5877	False	NA	5	True	AATAGA	-13	NA	80030364	80045898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_80033042_80033982_80034070_80034627_80034767_80036865_80036980_80037832_80037945_80039957_80040103_80041804_80042028_80042951_80043109_80044274
ENSMUSG00000022414.9_2	chr15	+	2939	11	FSM	ENSMUSG00000022414.9	ENSMUST00000023050.9	2964	11	19	6	-11	-6	multi-exon	FALSE	canonical	3	51	junction_3	7.29109045342327	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGATGTCATCTTGTC	5012	False	NA	9	True	AATAGA	-17	NA	80017346	80045902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_80017390_80032427_80032565_80032887_80033042_80033982_80034070_80034627_80034767_80036865_80036980_80037832_80037945_80039957_80040103_80041804_80042028_80042951_80043109_80044274
ENSMUSG00000022414.9_23	chr15	+	1384	1	ISM	ENSMUSG00000022414.9	ENSMUST00000023050.9	2964	11	27191	6	27161	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGATGTCATCTTGTC	2082	False	NA	9	True	AATAGA	-17	NA	80044518	80045902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_80044500_80045900
ENSMUSG00000022415.13_0	chr15	+	783	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	31	5	21	-5	multi-exon	FALSE	canonical	3	1267	junction_2	72.7232195840274	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATTTTGTGCCTGTGTG	NA	False	NA	13	True	NA	NA	NA	79975565	79997637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_79997366
ENSMUSG00000022415.13_1	chr15	+	4158	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009727.12	4180	4	16	6	16	-6	multi-exon	FALSE	canonical	3	37	junction_3	626.014554321401	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAGTGGGCTGTGTCAC	NA	False	NA	14	True	AATAAA	-14	NA	79975560	80003696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_80000055
ENSMUSG00000022415.13_12	chr15	+	2357	1	ISM	ENSMUSG00000022415.13	ENSMUST00000009727.12	4180	4	25797	4	1668	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGGGCTGTGTCACTG	NA	False	NA	16	True	AATAAA	-16	NA	80001341	80003698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_80001300_80003700
ENSMUSG00000022415.13_3	chr15	+	3129	2	ISM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	26	2	16	-2	intron_retention	FALSE	canonical	3	1445	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGCCTGTGTGGAT	NA	False	NA	16	True	NA	NA	NA	79975560	79997640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_79975694_79994644
ENSMUSG00000022415.13_5	chr15	+	1700	3	NIC	ENSMUSG00000022415.13	novel	819	4	NA	NA	24	-2	intron_retention	FALSE	canonical	3	1362	junction_2	41.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGCCTGTGTGGAT	NA	False	NA	16	True	NA	NA	NA	79975568	79997640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_79975694_79994644_79995946_79997366
ENSMUSG00000022419.17_0	chr15	+	8397	9	FSM	ENSMUSG00000022419.17	ENSMUST00000096433.10	8547	9	142	8	35	-8	multi-exon	FALSE	canonical	3	28	junction_7	6.05702071979286	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTACCAAGTGCTGAC	NA	False	NA	2	True	AATAAA	-13	NA	54975854	55122659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_54976016_55012736_55012916_55015183_55015308_55044260_55044440_55072126_55072313_55075587_55075723_55078883_55078955_55081564_55081670_55115402
ENSMUSG00000022419.17_9	chr15	+	3645	1	ISM	ENSMUSG00000022419.17	ENSMUST00000096433.10	8547	9	143302	8	122166	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTACCAAGTGCTGAC	6546	False	NA	2	True	AATAAA	-13	NA	55119014	55122659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_55119000_55122700
ENSMUSG00000022420.17_0	chr15	-	1489	5	ISM	ENSMUSG00000022420.17	ENSMUST00000162713.9	1357	7	2545	-674	-11	-10	3prime_fragment	FALSE	canonical	3	63	junction_3	39.8591269347436	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTAAACTTAGTCTGT	283	False	NA	NA	False	ATTAAA	-7	NA	79658628	79645663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79646727_79647710_79647795_79649016_79649223_79649987_79650055_79658559
ENSMUSG00000022420.17_1	chr15	-	1423	4	FSM	ENSMUSG00000022420.17	ENSMUST00000023055.8	1472	4	39	10	-12	-10	multi-exon	FALSE	canonical	3	65	junction_3	38.6091526281874	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTAAACTTAGTCTGT	282	False	NA	NA	False	ATTAAA	-7	NA	79658629	79645663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79646727_79647710_79647795_79649016_79649223_79658559
ENSMUSG00000022420.17_5	chr15	-	634	1	NIC	ENSMUSG00000022420.17	novel	1011	5	NA	NA	2785	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTAAACTTAGTCTGT	NA	False	NA	NA	False	ATTAAA	-7	NA	79646297	79645663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79645700_79646300
ENSMUSG00000022421.21_0	chr15	-	4960	5	FSM	ENSMUSG00000022421.21	ENSMUST00000175858.10	4948	5	-14	2	-14	-2	multi-exon	FALSE	canonical	3	12	junction_4	7.59522876548166	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGAGGCTCTTCTGTCAT	NA	False	NA	-4	True	AATAAA	-14	NA	79688924	79670554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79674118_79674466_79674647_79676803_79677052_79678456_79678677_79688175
ENSMUSG00000022421.21_1	chr15	-	2991	1	ISM	ENSMUSG00000022421.21	ENSMUST00000023057.10	5006	5	15424	1	1639	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGGCTCTTCTGTCATAT	NA	False	NA	-2	True	AATAAA	-16	NA	79673543	79670552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79670600_79673500
ENSMUSG00000022422.14_0	chr15	-	1303	9	FSM	ENSMUSG00000022422.14	ENSMUST00000023059.13	1324	9	18	3	7	0	multi-exon	FALSE	canonical	3	218	junction_7	27.4268914571083	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTATCCCTGACTTC	NA	False	NA	-8	True	AATAAA	-14	NA	54953869	54939497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
ENSMUSG00000022422.14_1	chr15	-	1498	10	FSM	ENSMUSG00000022422.14	ENSMUST00000110231.2	1499	10	1	0	1	0	multi-exon	FALSE	canonical	3	26	junction_5	97.4314573887145	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTATCCCTGACTTC	NA	False	NA	-8	True	AATAAA	-14	NA	54953875	54939497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54946800_54946990_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
ENSMUSG00000022426.7_0	chr15	-	3360	4	FSM	ENSMUSG00000022426.7	ENSMUST00000023061.7	3440	4	76	4	76	-4	multi-exon	FALSE	canonical	3	116	junction_1	10.9848380355227	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACACAAGTCTACTTGTC	NA	False	NA	-7	True	ATTAAA	-11	NA	79572044	79558455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79560381_79561297_79561493_79561599_79561729_79570933
ENSMUSG00000022426.7_1	chr15	-	1570	1	ISM	ENSMUSG00000022426.7	ENSMUST00000023061.7	3440	4	12096	3	12096	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACACAAGTCTACTTGTCT	NA	False	NA	-6	True	ATTAAA	-12	NA	79560024	79558454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79558500_79560000
ENSMUSG00000022427.5_0	chr15	+	1013	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	18	538	-2	182	multi-exon	FALSE	canonical	3	903	junction_3	55.9305124437656	356	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTGTTATTGCTGTGT	8196	False	NA	16	True	ATTAAA	-12	NA	79555079	79557063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
ENSMUSG00000022428.9_0	chr15	+	1108	5	FSM	ENSMUSG00000022428.9	ENSMUST00000023064.9	1147	5	34	5	34	-5	multi-exon	FALSE	canonical	3	177	junction_3	15.1224171348366	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATCTCTGTGTAGCAAA	9593	False	NA	NA	False	ATTAAA	-9	NA	79543433	79551856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79543495_79545571_79545726_79549846_79549953_79550031_79550151_79551188
ENSMUSG00000022428.9_3	chr15	+	1189	4	NIC	ENSMUSG00000022428.9	novel	1147	5	NA	NA	26	-11	intron_retention	FALSE	canonical	3	203	junction_3	5.71547606649408	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTCAATAATCTCTGTGT	9585	False	NA	NA	False	ATTAAA	-3	NA	79543425	79551850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_79543495_79545571_79545726_79549846_79550151_79551188
ENSMUSG00000022429.12_0	chr15	-	2196	14	FSM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	9	14	0	-14	multi-exon	FALSE	canonical	3	26	junction_6	20.9451241307391	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTACTACTAAAGGTTTT	NA	False	NA	NA	False	AGTAAA	-2	NA	79489300	79445711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79472951_79473025_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUSG00000022429.12_11	chr15	-	1710	5	ISM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	19671	9	-187	-9	3prime_fragment	FALSE	canonical	3	62	junction_2	10.5475115548645	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACTAAAGGTTTTTGATT	NA	False	NA	NA	False	AGTAAA	-7	NA	79469638	79445706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298
ENSMUSG00000022429.12_13	chr15	-	2017	12	NIC	ENSMUSG00000022429.12	novel	2219	14	NA	NA	0	6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_6	30.287602133137	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGGTGATCTTTTATATT	NA	False	NA	NA	False	ATTAAA	-19	NA	79489300	79445764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79475805_79475848_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUSG00000022429.12_15	chr15	-	1918	11	NIC	ENSMUSG00000022429.12	novel	2219	14	NA	NA	12	2	combination_of_known_splicesites	FALSE	canonical	1	4	junction_6	24.8927700346908	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATATAAGACTATTTAAA	NA	False	NA	NA	False	AATAAA	-12	NA	79489288	79445809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUSG00000022429.12_2	chr15	-	905	1	ISM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	42704	3	22846	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTTTTGATTCTGCAT	8939	False	NA	NA	False	AGTAAA	-13	NA	79446605	79445700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79445700_79446600
ENSMUSG00000022429.12_22	chr15	-	818	4	ISM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	-16	38047	-6	-37275	5prime_fragment	FALSE	canonical	3	81	junction_3	2.82842712474619	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACTTTACCTTTATACTA	NA	False	NA	NA	False	ATTAAA	-15	NA	79489316	79483858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUSG00000022429.12_25	chr15	-	1381	7	ISM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	2	29203	2	-28431	5prime_fragment	FALSE	canonical	3	43	junction_3	20.0201287597147	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGATTTTATTTGTAT	NA	False	NA	NA	False	AATAAA	-14	NA	79489298	79475014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUSG00000022429.12_7	chr15	-	1375	4	ISM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	20132	4	274	-4	3prime_fragment	FALSE	canonical	3	62	junction_2	7.40870359029762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTTTTTGATTCTGCA	NA	False	NA	NA	False	AGTAAA	-12	NA	79469177	79445701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062
ENSMUSG00000022429.12_8	chr15	-	1933	12	FSM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	0	-2	0	2	multi-exon	FALSE	canonical	3	19	junction_5	21.834085113127	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATATAAGACTATTTAAA	NA	False	NA	NA	False	AATAAA	-12	NA	79489300	79445809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUSG00000022429.12_9	chr15	-	3240	6	ISM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	16782	871	-2430	15	3prime_fragment	FALSE	canonical	3	59	junction_5	11.0742945599257	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTATCTTAAAAGTTCC	NA	False	NA	11	True	ATTAAA	-30	NA	79472527	79446568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869
ENSMUSG00000022432.8_0	chr15	-	4061	25	FSM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	-16	2	-16	-2	multi-exon	FALSE	canonical	3	89	junction_19	18.7071269098764	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCTTTACTCTGGTCTT	NA	False	NA	-8	True	TATAAA	-15	NA	85016181	84948891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_84949307_84950419_84950531_84951937_84952008_84953845_84953998_84954980_84955136_84955782_84955940_84970293_84970390_84973792_84973947_84975072_84975219_84976143_84976286_84980846_84980954_84981705_84981823_84982096_84982235_84991118_84991266_84994852_84995033_84996887_84997074_84998879_84999088_85000039_85000123_85004818_85004960_85005789_85006049_85007921_85008161_85011668_85011873_85011959_85012073_85013871_85014061_85016029
ENSMUSG00000022432.8_4	chr15	-	3876	24	NIC	ENSMUSG00000022432.8	novel	4047	25	NA	NA	-17	-2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_15	32.4523789545692	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCTTTACTCTGGTCTT	NA	False	NA	-8	True	TATAAA	-15	NA	85016182	84948891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_84949307_84950419_84950531_84951937_84952008_84953845_84953998_84954980_84955136_84955782_84955940_84970293_84970390_84973792_84973947_84975072_84975219_84976143_84976286_84980846_84980954_84981705_84981823_84982096_84982235_84991118_84991266_84994852_84995033_84998879_84999088_85000039_85000123_85004818_85004960_85005789_85006049_85007921_85008161_85011668_85011873_85011959_85012073_85013871_85014061_85016029
ENSMUSG00000022432.8_6	chr15	-	3854	24	NIC	ENSMUSG00000022432.8	novel	4047	25	NA	NA	-13	-2	combination_of_known_splicesites	FALSE	canonical	2	7	junction_21	32.0725194338633	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCTTTACTCTGGTCTT	NA	False	NA	-8	True	TATAAA	-15	NA	85016178	84948891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_84949307_84950419_84950531_84951937_84952008_84953845_84953998_84954980_84955136_84955782_84955940_84970293_84970390_84973792_84973947_84975072_84975219_84976143_84976286_84980846_84980954_84981705_84981823_84982096_84982235_84991118_84991266_84994852_84995033_84996887_84997074_84998879_84999088_85000039_85000123_85004818_85004960_85005789_85006049_85007921_85008161_85011959_85012073_85013871_85014061_85016029
ENSMUSG00000022433.22_10	chr15	-	2622	10	ISM	ENSMUSG00000022433.22	ENSMUST00000117786.9	2695	11	3140	5	158	-5	3prime_fragment	TRUE	canonical	3	402	junction_1	63.5343787563128	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAGATACCCTCTGTCTG	5171	False	NA	-9	True	AATAAA	-19	NA	79323060	79302060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971
ENSMUSG00000022433.22_2	chr15	-	2756	11	FSM	ENSMUSG00000022433.22	ENSMUST00000120859.9	1392	11	-60	-1304	-60	-6	multi-exon	FALSE	canonical	3	332	junction_10	81.5738315883225	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATAGATACCCTCTGTCT	8093	False	NA	-10	True	AATAAA	-18	NA	79326263	79302061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326127
ENSMUSG00000022433.22_3	chr15	-	2751	11	FSM	ENSMUSG00000022433.22	ENSMUST00000117786.9	2695	11	-62	6	-59	-6	multi-exon	FALSE	canonical	3	59	junction_10	149.550794046705	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATAGATACCCTCTGTCT	8094	False	NA	-10	True	AATAAA	-18	NA	79326262	79302061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323056_79326127
ENSMUSG00000022433.22_49	chr15	-	1554	9	NIC	ENSMUSG00000022433.22	novel	3174	9	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	217.31684098339	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACGTGTACCTCTCTTT	8088	False	NA	-1	True	ATTAAA	-18	NA	79326268	79307843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79308256_79308351_79308456_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326127
ENSMUSG00000022433.22_5	chr15	-	2644	11	NIC	ENSMUSG00000022433.22	novel	1392	11	NA	NA	20	-7	combination_of_known_junctions	FALSE	canonical	3	24	junction_10	159.216487839671	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATAGATACCCTCTGTC	8039	False	NA	-11	True	AATAAA	-17	NA	79326317	79302062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326292
ENSMUSG00000022433.22_8	chr15	-	2682	11	NIC	ENSMUSG00000022433.22	novel	1392	11	NA	NA	15	-6	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	155.61375260561	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATAGATACCCTCTGTCT	8444	False	NA	-10	True	AATAAA	-18	NA	79339752	79302061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
ENSMUSG00000022434.9_0	chr15	+	2447	9	FSM	ENSMUSG00000022434.9	ENSMUST00000023069.9	2518	9	63	8	27	-8	multi-exon	FALSE	canonical	3	157	junction_8	15.0742951742362	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCAACCCTGTGTGCTC	NA	False	NA	0	True	AATAAA	-7	NA	84921352	84947023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
ENSMUSG00000022434.9_1	chr15	+	2655	10	NIC	ENSMUSG00000022434.9	novel	2518	9	NA	NA	12	-8	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	65.1689163199833	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCAACCCTGTGTGCTC	NA	False	NA	0	True	AATAAA	-7	NA	84921337	84947023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_84921446_84922972_84923166_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
ENSMUSG00000022434.9_4	chr15	+	2469	9	NNC	ENSMUSG00000022434.9	novel	2518	9	NA	NA	8	-8	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_8	55.8635334990546	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCAACCCTGTGTGCTC	NA	False	NA	0	True	AATAAA	-7	NA	84921333	84947023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945729
ENSMUSG00000022434.9_6	chr15	+	2566	10	NIC	ENSMUSG00000022434.9	novel	2518	9	NA	NA	15	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	67.2724330384562	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTGTGTGCTCAGTTTT	NA	False	NA	6	True	AATAAA	-13	NA	84921340	84947029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84944289_84944391_84945732
ENSMUSG00000022435.7_0	chr15	+	1093	6	FSM	ENSMUSG00000022435.7	ENSMUST00000023070.7	1093	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.85472369909914	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTCCAGAGTGAAAGGAG	NA	False	NA	NA	False	AATAAA	-13	NA	84901341	84906748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_84901473_84902226_84902383_84903510_84903791_84904741_84904825_84905463_84905597_84906438
ENSMUSG00000022436.17_0	chr15	+	2461	18	FSM	ENSMUSG00000022436.17	ENSMUST00000001226.11	2375	18	-93	7	42	-7	multi-exon	FALSE	canonical	3	356	junction_17	50.4832700370451	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAACAGGAGTAACTGG	4440	False	NA	76	True	AATAAA	-9	NA	78784009	78796240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
ENSMUSG00000022436.17_17	chr15	+	3704	17	ISM	ENSMUSG00000022436.17	ENSMUST00000061239.14	1917	18	38	11	38	-7	intron_retention	FALSE	canonical	3	401	junction_16	46.1503995107301	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAACAGGAGTAACTGG	4436	False	NA	76	True	AATAAA	-9	NA	78784005	78796240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207
ENSMUSG00000022437.8_0	chr15	+	1659	15	FSM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	1	2969	1	-2969	multi-exon	FALSE	canonical	3	1573	junction_6	135.39963524504	1710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCAGCGGTGTCCTGGAT	NA	False	NA	22	True	AATAAA	-8	NA	84076442	84098499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
ENSMUSG00000022437.8_37	chr15	+	1370	13	ISM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	4799	2969	1241	-2969	3prime_fragment	FALSE	canonical	3	1573	junction_4	139.621785748341	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCAGCGGTGTCCTGGAT	NA	False	NA	22	True	AATAAA	-8	NA	84081240	84098499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
ENSMUSG00000022438.7_0	chr15	+	1612	13	FSM	ENSMUSG00000022438.7	ENSMUST00000023072.7	3784	13	19	2153	-4	-2153	multi-exon	FALSE	canonical	3	64	junction_4	7.38052994182818	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCTGAGTCTCAGAAGAT	NA	False	NA	19	True	AGTAAA	-22	NA	84116262	84197736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_84116388_84155431_84155522_84157699_84157771_84166962_84167066_84174587_84174729_84176982_84177099_84179757_84179817_84182166_84182187_84187608_84187671_84188035_84188105_84193053_84193156_84196903_84196977_84197155
ENSMUSG00000022438.7_5	chr15	+	169	1	ISM	ENSMUSG00000022438.7	ENSMUST00000131158.2	438	2	2427	20	2427	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAAAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	84157918	84158087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_84157900_84158100
ENSMUSG00000022438.7_7	chr15	+	1406	1	ISM	ENSMUSG00000022438.7	ENSMUST00000023072.7	3784	13	82239	1	42991	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCTGTGCTTTGATCAGAC	6185	False	NA	78	True	AATAAA	-15	NA	84198482	84199888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_84198500_84199900
ENSMUSG00000022439.10_0	chr15	+	2857	13	FSM	ENSMUSG00000022439.10	ENSMUST00000023074.9	2619	13	-241	3	-241	-3	multi-exon	TRUE	canonical	2	3	junction_2	5.54464205837992	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGCATGACTTAATGACA	NA	False	NA	NA	False	AATAAA	-17	NA	84208679	84227140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_84209033_84211188_84211285_84212495_84212561_84213064_84213168_84214223_84214365_84215179_84215296_84216491_84216548_84216891_84216915_84218542_84218602_84218786_84218856_84221985_84222088_84225054_84225128_84225539
ENSMUSG00000022439.10_3	chr15	+	1155	1	ISM	ENSMUSG00000022439.10	ENSMUST00000023074.9	2619	13	17060	8	15661	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTAAATGCATGACTTAA	NA	False	NA	NA	False	AATAAA	-12	NA	84225980	84227135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_84226000_84227100
ENSMUSG00000022440.10_0	chr15	-	2397	3	FSM	ENSMUSG00000022440.10	ENSMUST00000023075.9	2402	3	3	2	3	0	multi-exon	FALSE	canonical	1	2	junction_2	2.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCAGCCTGGTACTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	78413822	78407547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_78409599_78411427_78411669_78413717
ENSMUSG00000022440.10_1	chr15	-	1168	1	ISM	ENSMUSG00000022440.10	ENSMUST00000023075.9	2402	3	5110	2	5077	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCAGCCTGGTACTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	78408715	78407547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_78407500_78408700
ENSMUSG00000022442.17_0	chr15	-	2038	12	FSM	ENSMUSG00000022442.17	ENSMUST00000016897.12	2060	12	16	6	-3	-6	multi-exon	FALSE	canonical	3	63	junction_11	7.21110255092798	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACATCTGACTTTATCTT	NA	False	NA	NA	False	NA	NA	NA	83395078	83367975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83394934
ENSMUSG00000022443.18_0	chr15	-	7371	41	FSM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	60	2	-10	-2	multi-exon	TRUE	canonical	3	307	junction_27	78.3427565254121	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTGGTGTCTGGGTGT	NA	False	NA	-4	True	AATAAA	-15	NA	77726315	77644788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756_77658895_77659273_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
ENSMUSG00000022443.18_1	chr15	-	4033	17	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	68792	2	-3604	-2	3prime_fragment	FALSE	canonical	3	405	junction_16	58.0042765125986	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTGGTGTCTGGGTGT	2263	False	NA	-4	True	AATAAA	-15	NA	77657583	77644788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471
ENSMUSG00000022443.18_10	chr15	-	2725	10	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	74636	2	-349	-2	3prime_fragment	FALSE	canonical	3	493	junction_9	40.0900221569309	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTGGTGTCTGGGTGT	8107	False	NA	-4	True	AATAAA	-15	NA	77651739	77644788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650
ENSMUSG00000022443.18_17	chr15	-	3659	15	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	70955	2	-1441	-2	3prime_fragment	FALSE	canonical	3	454	junction_14	45.5752349507529	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTGGTGTCTGGGTGT	4426	False	NA	-4	True	AATAAA	-15	NA	77655420	77644788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324
ENSMUSG00000022443.18_26	chr15	-	3455	14	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	72310	2	-86	-2	3prime_fragment	TRUE	canonical	3	473	junction_13	42.7314442929437	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTGGTGTCTGGGTGT	5781	False	NA	-4	True	AATAAA	-15	NA	77654065	77644788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966
ENSMUSG00000022443.18_29	chr15	-	901	1	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	80686	2	5701	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTGGTGTCTGGGTGT	NA	False	NA	-4	True	AATAAA	-15	NA	77645689	77644788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_77644800_77645700
ENSMUSG00000022443.18_7	chr15	-	2515	9	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	74953	2	-32	-2	3prime_fragment	FALSE	canonical	3	518	junction_1	37.367892300744	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTGGTGTCTGGGTGT	8424	False	NA	-4	True	AATAAA	-15	NA	77651422	77644788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330
ENSMUSG00000022443.18_8	chr15	-	3018	11	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	73215	2	819	-2	3prime_fragment	FALSE	canonical	3	492	junction_10	41.4709536905049	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTGGTGTCTGGGTGT	6686	False	NA	-4	True	AATAAA	-15	NA	77653160	77644788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991
ENSMUSG00000022443.18_9	chr15	-	2395	8	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	75328	2	343	-2	3prime_fragment	FALSE	canonical	3	518	junction_1	37.2251834879868	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTGGTGTCTGGGTGT	8799	False	NA	-4	True	AATAAA	-15	NA	77651047	77644788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913
ENSMUSG00000022450.7_0	chr15	-	486	3	FSM	ENSMUSG00000022450.7	ENSMUST00000023085.7	590	3	78	26	-7	-2	multi-exon	FALSE	canonical	3	3916	junction_1	175	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAAAATTGCACTGGTGAA	6290	False	NA	-39	True	AATAAA	-24	NA	82238445	82234366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_82234573_82235179_82235296_82238281
ENSMUSG00000022450.7_1	chr15	-	3462	2	FSM	ENSMUSG00000022450.7	ENSMUST00000230589.2	440	2	-3026	4	4	-1	multi-exon	FALSE	canonical	3	3916	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATTGCACTGGTGAAC	6301	False	NA	-38	True	AATAAA	-25	NA	82238434	82234365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_82234573_82235179
ENSMUSG00000022451.13_0	chr15	-	2986	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	41	-2	41	2	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	906	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTGTATGTTGGCTTTC	NA	False	NA	-10	True	AATAAA	-14	NA	94487719	94475829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
ENSMUSG00000022451.13_1	chr15	-	2908	8	NIC	ENSMUSG00000022451.13	novel	3025	9	NA	NA	41	2	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	174.476242462043	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTGTATGTTGGCTTTC	NA	False	NA	-10	True	AATAAA	-14	NA	94487719	94475829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94487632
ENSMUSG00000022451.13_12	chr15	-	2901	8	ISM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	1572	-2	1572	2	3prime_fragment	FALSE	canonical	3	505	junction_2	19.025224930956	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTGTATGTTGGCTTTC	NA	False	NA	-10	True	AATAAA	-14	NA	94486188	94475829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108
ENSMUSG00000022451.13_4	chr15	-	1894	1	Genic_Genomic	ENSMUSG00000022451.13	novel	NA	NA	NA	NA	1544	2	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTGTATGTTGGCTTTC	NA	False	NA	-10	True	AATAAA	-14	NA	94477723	94475829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_94475800_94477700
ENSMUSG00000022452.17_0	chr15	+	559	3	NNC	ENSMUSG00000022452.17	novel	705	3	NA	NA	-13	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	801.5	182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGAGGTCGTCCCCATTT	NA	False	NA	32	True	AATAAA	-14	NA	82230264	82233262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_82230471_82232100_82232242_82233050
ENSMUSG00000022452.17_1	chr15	+	516	3	FSM	ENSMUSG00000022452.17	ENSMUST00000161892.2	597	3	51	30	-12	2	multi-exon	FALSE	canonical	3	88	junction_1	632.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGAGGTCGTCCCCATTT	NA	False	NA	32	True	AATAAA	-14	NA	82230265	82233262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82230422_82232100_82232242_82233043
ENSMUSG00000022452.17_2	chr15	+	565	3	FSM	ENSMUSG00000022452.17	ENSMUST00000023086.15	705	3	111	29	-12	2	multi-exon	FALSE	canonical	3	1353	junction_2	125	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGAGGTCGTCCCCATTT	NA	False	NA	32	True	AATAAA	-14	NA	82230265	82233262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82230471_82232100_82232242_82233043
ENSMUSG00000022453.9_0	chr15	-	1888	10	FSM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	10	15	-9	-15	multi-exon	FALSE	canonical	3	252	junction_2	15.084944665313	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGTTTTCTAATCAACCA	1354	False	NA	-15	True	AATAAA	-16	NA	82223017	82213747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
ENSMUSG00000022453.9_11	chr15	-	1696	8	ISM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	1354	15	864	-15	3prime_fragment	FALSE	canonical	3	252	junction_2	16.050939320215	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGTTTTCTAATCAACCA	2698	False	NA	-15	True	AATAAA	-16	NA	82221673	82213747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587
ENSMUSG00000022453.9_5	chr15	-	1810	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-8	-15	combination_of_known_splicesites	FALSE	canonical	2	29	junction_8	84.7758072801433	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGTTTTCTAATCAACCA	1355	False	NA	-15	True	AATAAA	-16	NA	82223016	82213747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222952
ENSMUSG00000022453.9_6	chr15	-	1727	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-1	-15	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	86.2554346113913	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGTTTTCTAATCAACCA	1343	False	NA	-15	True	AATAAA	-16	NA	82223028	82213747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
ENSMUSG00000022454.18_1	chr15	-	3395	21	NNC	ENSMUSG00000022454.18	novel	3220	21	NA	NA	-58507	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	3.2542280190546	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCCATGCGAGCCCGCGT	NA	False	NA	-2	True	AATAAA	-20	NA	95484947	95117332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_95118036_95126964_95127190_95129177_95129355_95130364_95130559_95139417_95139559_95194039_95194136_95196738_95196862_95244642_95244769_95272608_95272738_95281506_95281610_95282945_95283038_95327758_95327862_95329419_95329549_95330475_95330559_95330731_95330805_95332942_95333040_95333137_95333312_95371389_95371541_95425157_95425287_95425681_95425768_95484686
ENSMUSG00000022455.5_1	chr15	+	3894	6	FSM	ENSMUSG00000022455.5	ENSMUST00000023089.5	1413	6	13	-2494	13	2494	multi-exon	FALSE	canonical	3	14	junction_3	3.32264954516723	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCGTGCATGGTCAGTAA	2013	False	NA	-1	True	AATAAA	-12	NA	82183167	82201318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82183270_82189871_82189981_82190244_82190387_82190546_82190640_82192723_82192829_82197975
ENSMUSG00000022455.5_2	chr15	+	3592	4	ISM	ENSMUSG00000022455.5	ENSMUST00000023089.5	1413	6	7175	-2488	7175	2488	3prime_fragment	FALSE	canonical	3	14	junction_1	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAACATGCCGTGCATGGT	9175	False	NA	-7	True	AATAAA	-6	NA	82190329	82201312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_82190387_82190546_82190640_82192723_82192829_82197975
ENSMUSG00000022456.19_0	chr15	+	4791	10	FSM	ENSMUSG00000022456.19	ENSMUST00000116423.3	2397	10	109	-2503	9	-5	multi-exon	FALSE	canonical	2	4	junction_1	12.7017059221718	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAATGGCCTGGTCTTTGT	NA	False	NA	NA	False	ACTAAA	-16	NA	82159202	82178770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82159255_82163615_82163808_82167259_82167389_82167877_82167960_82168572_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938
ENSMUSG00000022456.19_13	chr15	+	3470	1	NIC	ENSMUSG00000022456.19	novel	6022	12	NA	NA	6673	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGCCTGGTCTTTGTCTT	4078	False	NA	NA	False	ACTAAA	-19	NA	82175303	82178773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_82175300_82178800
ENSMUSG00000022456.19_2	chr15	+	4995	10	FSM	ENSMUSG00000022456.19	ENSMUST00000023095.14	4992	10	-11	8	-11	-8	multi-exon	FALSE	canonical	3	32	junction_7	5.9087714668037	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGGCCTGGTCTT	NA	False	NA	NA	False	ACTAAA	-13	NA	82159428	82178767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82159688_82163615_82163808_82167259_82167389_82167877_82167960_82168572_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938
ENSMUSG00000022456.19_3	chr15	+	2580	11	NIC	ENSMUSG00000022456.19	novel	1888	12	NA	NA	-10	-8	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	9.47048045243746	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGGCCTGGTCTT	NA	False	NA	NA	False	ACTAAA	-13	NA	82159429	82178767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_82159688_82163615_82163808_82167259_82167389_82167877_82167960_82168572_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938_82175033_82177446
ENSMUSG00000022456.19_4	chr15	+	4575	11	ISM	ENSMUSG00000022456.19	ENSMUST00000230365.2	1888	12	-49	-711	-12	-8	intron_retention	FALSE	canonical	1	1	junction_10	13.0938917056771	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGGCCTGGTCTT	NA	False	NA	NA	False	ACTAAA	-13	NA	82159427	82178767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_82159688_82163615_82163808_82167259_82167389_82167877_82167960_82168572_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938_82175033_82175453
ENSMUSG00000022456.19_7	chr15	+	2546	12	FSM	ENSMUSG00000022456.19	ENSMUST00000230365.2	1888	12	53	-711	53	-8	multi-exon	FALSE	canonical	1	1	junction_10	16.125028028677	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGGCCTGGTCTT	NA	False	NA	NA	False	ACTAAA	-13	NA	82159529	82178767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82159688_82163615_82163808_82167259_82167389_82167877_82167960_82168572_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938_82175033_82175453_82175520_82177446
ENSMUSG00000022462.8_0	chr15	-	4637	16	FSM	ENSMUSG00000022462.8	ENSMUST00000023099.8	4660	16	21	2	21	-2	multi-exon	FALSE	canonical	3	252	junction_15	32.8196418153655	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTCAGTAGGATTTTTT	NA	False	NA	-10	True	AATAAA	-14	NA	96597590	96585274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316_96593391_96595802_96595919_96596062_96596145_96596495_96596699_96597288
ENSMUSG00000022462.8_1	chr15	-	4337	15	ISM	ENSMUSG00000022462.8	ENSMUST00000023099.8	4660	16	911	2	-128	-2	3prime_fragment	FALSE	canonical	3	258	junction_12	29.2041547225943	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTCAGTAGGATTTTTT	864	False	NA	-10	True	AATAAA	-14	NA	96596700	96585274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316_96593391_96595802_96595919_96596062_96596145_96596495
ENSMUSG00000022462.8_19	chr15	-	4521	15	NIC	ENSMUSG00000022462.8	novel	4660	16	NA	NA	21	-2	combination_of_known_splicesites	FALSE	canonical	3	14	junction_12	84.1414018792418	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTCAGTAGGATTTTTT	NA	False	NA	-10	True	AATAAA	-14	NA	96597590	96585274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316_96593391_96596062_96596145_96596495_96596699_96597288
ENSMUSG00000022462.8_4	chr15	-	2070	1	ISM	ENSMUSG00000022462.8	ENSMUST00000023099.8	4660	16	10267	2	9228	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTCAGTAGGATTTTTT	NA	False	NA	-10	True	AATAAA	-14	NA	96587344	96585274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_96585300_96587300
ENSMUSG00000022463.9_0	chr15	+	1975	4	FSM	ENSMUSG00000022463.9	ENSMUST00000230105.2	1981	4	4	2	4	-2	multi-exon	FALSE	canonical	3	662	junction_2	39.6176167324027	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	2247	False	NA	NA	False	NA	NA	NA	82031455	82058093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953
ENSMUSG00000022463.9_1	chr15	+	4996	19	FSM	ENSMUSG00000022463.9	ENSMUST00000023100.8	5077	19	75	6	5	-6	multi-exon	FALSE	canonical	3	437	junction_18	78.7541886011292	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAACACAAGGCTGTGTG	2248	False	NA	19	True	AATAAA	-15	NA	82031456	82089574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897
ENSMUSG00000022463.9_61	chr15	+	182	1	ISM	ENSMUSG00000022463.9	ENSMUST00000230105.2	1981	4	26460	2	-21261	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	82057911	82058093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_82057900_82058100
ENSMUSG00000022463.9_71	chr15	+	3210	11	ISM	ENSMUSG00000022463.9	ENSMUST00000023100.8	5077	19	32278	6	-15513	-6	3prime_fragment	FALSE	canonical	3	437	junction_10	91.6211765914409	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAACACAAGGCTGTGTG	4508	False	NA	19	True	AATAAA	-15	NA	82063659	82089574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897
ENSMUSG00000022463.9_83	chr15	+	1229	1	ISM	ENSMUSG00000022463.9	ENSMUST00000023100.8	5077	19	56966	4	9175	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACACAAGGCTGTGTGAG	5927	False	NA	21	True	AATAAA	-17	NA	82088347	82089576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_82088300_82089600
ENSMUSG00000022464.15_0	chr15	-	3919	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	8	5	8	-5	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	3059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGATGTGGCTATGATCT	NA	False	NA	-17	True	AATAAA	-11	NA	96953829	96892708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
ENSMUSG00000022464.15_5	chr15	-	1801	1	ISM	ENSMUSG00000022464.15	ENSMUST00000231039.2	3923	15	23328	3	23328	0	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGCTATGATCTTCTTT	NA	False	NA	-12	True	AATAAA	-16	NA	96894504	96892703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_96892700_96894500
ENSMUSG00000022466.7_0	chr15	-	2245	17	FSM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	19	7	19	-7	multi-exon	FALSE	canonical	3	236	junction_16	35.978292066189	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTATAAGGGTCGATAT	NA	False	NA	-10	True	AATAAA	-18	NA	97603687	97572984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082_97601251_97603630
ENSMUSG00000022466.7_3	chr15	-	2189	16	ISM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	2455	7	2455	-7	3prime_fragment	FALSE	canonical	3	254	junction_7	32.2446205677095	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTATAAGGGTCGATAT	NA	False	NA	-10	True	AATAAA	-18	NA	97601251	97572984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082
ENSMUSG00000022469.18_19	chr15	-	3585	29	NIC	ENSMUSG00000022469.18	novel	4005	28	NA	NA	60	-1	combination_of_known_junctions	TRUE	canonical	2	4	junction_28	11.2217900278241	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGTGTGTTCTACCGCCT	113	False	NA	-19	True	CATAAA	-12	NA	97665793	97642834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_97643548_97644938_97645011_97645103_97645159_97646093_97646159_97646463_97646552_97647376_97647428_97647531_97647623_97647886_97648069_97648149_97648276_97648671_97648770_97651657_97651805_97652118_97652201_97654481_97654522_97655059_97655143_97655230_97655391_97655563_97655643_97655897_97655987_97656271_97656385_97656722_97656870_97657042_97657120_97657205_97657267_97657845_97657931_97658459_97658629_97658988_97659111_97659355_97659463_97659559_97659614_97664642_97664856_97665275_97665423_97665724
ENSMUSG00000022469.18_3	chr15	-	3447	27	FSM	ENSMUSG00000022469.18	ENSMUST00000177352.8	3395	27	1	-53	1	-7	multi-exon	FALSE	canonical	3	28	junction_8	8.251232649531	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGATACGTGTGTGTT	964	False	NA	-28	True	CATAAA	-3	NA	97664942	97642843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_97643548_97644938_97645011_97645103_97645159_97646093_97646159_97646463_97646552_97647376_97647428_97647531_97647623_97647886_97648069_97648149_97648276_97648671_97648770_97651657_97651805_97652118_97652201_97654481_97654522_97655059_97655143_97655230_97655391_97655563_97655643_97655897_97655987_97656271_97656385_97656722_97656870_97657042_97657120_97657205_97657267_97657845_97657931_97658459_97658629_97658988_97659111_97659355_97659463_97659559_97659614_97664642
ENSMUSG00000022469.18_6	chr15	-	3667	28	FSM	ENSMUSG00000022469.18	ENSMUST00000126854.9	4005	28	145	193	-35	-7	multi-exon	FALSE	canonical	3	28	junction_8	8.12572672702261	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGATACGTGTGTGTT	324	False	NA	-28	True	CATAAA	-3	NA	97665582	97642843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_97643548_97644938_97645011_97645103_97645159_97646093_97646159_97646463_97646552_97647376_97647428_97647531_97647623_97647886_97648069_97648149_97648276_97648671_97648770_97651657_97651805_97652118_97652201_97654481_97654522_97655059_97655143_97655230_97655391_97655563_97655643_97655897_97655987_97656271_97656385_97656722_97656870_97657042_97657120_97657205_97657267_97657845_97657931_97658459_97658629_97658988_97659111_97659355_97659463_97659559_97659614_97664642_97664856_97665275
ENSMUSG00000022471.15_0	chr15	+	2080	13	FSM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	32	2	32	-1	multi-exon	TRUE	canonical	3	579	junction_9	64.3868516598433	814	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGCACTTTTCAGT	NA	False	NA	27	True	AATAAA	-13	NA	81900601	81924284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
ENSMUSG00000022472.17_1	chr15	-	2936	6	FSM	ENSMUSG00000022472.17	ENSMUST00000152227.8	2934	6	-17	15	-17	-15	multi-exon	FALSE	canonical	3	162	junction_5	9.30806102257608	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATGTCTGCCTGCTGCTG	NA	False	NA	-24	True	AATAAA	-1	NA	81900381	81876738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81879047_81882310_81882434_81883705_81883816_81886741_81886812_81887958_81887981_81900078
ENSMUSG00000022472.17_3	chr15	-	1651	1	ISM	ENSMUSG00000022472.17	ENSMUST00000146628.8	2854	5	21980	0	21838	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGTAAGTTGCTTGA	NA	False	NA	-9	True	AATAAA	-16	NA	81878374	81876723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_81876700_81878400
ENSMUSG00000022472.17_5	chr15	-	3033	6	NIC	ENSMUSG00000022472.17	novel	2934	6	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	70.4198835557117	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGTAAGTTGCTTGA	NA	False	NA	-9	True	AATAAA	-16	NA	81900396	81876723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_81879047_81882310_81882501_81883705_81883816_81886741_81886812_81887958_81887981_81900078
ENSMUSG00000022474.16_0	chr15	-	1222	8	FSM	ENSMUSG00000022474.16	ENSMUST00000023112.12	1300	8	74	4	2	-4	multi-exon	FALSE	canonical	3	940	junction_3	83.919543587405	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGTGTGGTGTTTGCTC	NA	False	NA	-7	True	ATTAAA	-10	NA	81845057	81835312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ENSMUSG00000022474.16_1	chr15	-	4067	7	NIC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	2	-7	intron_retention	FALSE	canonical	3	1009	junction_2	63.2308381162933	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACAAGGTGTGGTGTTTG	NA	False	NA	-10	True	ATTAAA	-7	NA	81845057	81835315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_81835814_81836124_81836241_81836925_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ENSMUSG00000022474.16_32	chr15	-	629	5	FSM	ENSMUSG00000022474.16	ENSMUST00000230229.2	612	5	-26	9	-1	-9	multi-exon	FALSE	canonical	3	1051	junction_1	37.9300342736465	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACTTGGACACCTACTGTG	NA	False	NA	-13	True	NA	NA	NA	81845060	81839752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ENSMUSG00000022475.20_0	chr15	-	4049	25	NIC	ENSMUSG00000022475.20	novel	4069	26	NA	NA	5	0	combination_of_known_junctions	TRUE	canonical	2	7	junction_20	5.27029806241228	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATATATGTTTTATTTG	2268	False	NA	-24	True	NA	NA	NA	97729370	97690568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563_97700698_97704346_97704549_97705474_97705670_97705845_97706043_97706233_97706415_97706540_97706652_97706847_97706940_97707281_97707408_97707804_97707921_97708733_97708846_97709143_97709235_97709318_97709510_97729239
ENSMUSG00000022475.20_13	chr15	-	2662	15	ISM	ENSMUSG00000022475.20	ENSMUST00000079838.14	3985	25	23748	21	-113	2	3prime_fragment	FALSE	canonical	2	9	junction_9	5.10501953863018	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATATGTTTTATTTGCTT	187	False	NA	-21	True	NA	NA	NA	97705627	97690565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563_97700698_97704346_97704549_97705474
ENSMUSG00000022475.20_15	chr15	-	2149	12	ISM	ENSMUSG00000022475.20	ENSMUST00000121514.8	3767	23	12332	2	5102	0	3prime_fragment	FALSE	canonical	2	9	junction_9	5.47420698811804	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACAATATATGTTTTATT	5402	False	NA	-26	True	NA	NA	NA	97700412	97690570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310
ENSMUSG00000022475.20_24	chr15	-	2189	13	ISM	ENSMUSG00000022475.20	ENSMUST00000121514.8	3767	23	12162	0	4932	0	3prime_fragment	FALSE	canonical	2	9	junction_9	5.26518966631044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATATATGTTTTATTTG	5232	False	NA	-24	True	NA	NA	NA	97700582	97690568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563
ENSMUSG00000022475.20_4	chr15	-	3965	25	NIC	ENSMUSG00000022475.20	novel	4069	26	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_23	7.0443781761692	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAGTGAAAA	2261	False	NA	-61	True	NA	NA	NA	97729377	97690605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563_97700698_97704346_97704549_97705474_97705670_97705845_97706043_97706233_97706415_97706847_97706940_97707281_97707408_97707804_97707921_97708733_97708846_97709143_97709235_97709318_97709510_97724615_97724673_97729239
ENSMUSG00000022475.20_7	chr15	-	3907	24	FSM	ENSMUSG00000022475.20	ENSMUST00000088402.12	4223	24	272	44	-1	0	multi-exon	FALSE	canonical	2	7	junction_19	5.55841976156414	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAGTGAAAA	2262	False	NA	-61	True	NA	NA	NA	97729376	97690605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563_97700698_97704346_97704549_97705474_97705670_97705845_97706043_97706233_97706415_97706847_97706940_97707281_97707408_97707804_97707921_97708733_97708846_97709143_97709235_97709318_97709510_97729239
ENSMUSG00000022476.9_0	chr15	-	1452	6	FSM	ENSMUSG00000022476.9	ENSMUST00000023113.7	2542	6	32	1058	32	314	multi-exon	FALSE	canonical	3	251	junction_5	12.0432553738597	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGGAACCTCCCCTTTTC	460	False	NA	-6	True	AATAAA	-13	NA	81810409	81800287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809986
ENSMUSG00000022476.9_1	chr15	-	2007	6	FSM	ENSMUSG00000022476.9	ENSMUST00000230765.2	1290	6	-236	-481	33	312	multi-exon	FALSE	canonical	1	4	junction_5	105.973581613532	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCAGGAACCTCCCCTTT	461	False	NA	-8	True	AATAAA	-11	NA	81810408	81800289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809428
ENSMUSG00000022477.14_0	chr15	+	2734	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	175	9	0	-9	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	3768	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTATTAATGTTCTGCCTG	NA	False	NA	10	True	AAAAAG	-7	NA	81756684	81799325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
ENSMUSG00000022479.16_0	chr15	-	4005	7	ISM	ENSMUSG00000022479.16	ENSMUST00000023119.15	4370	10	31444	77	-17168	-77	3prime_fragment	FALSE	canonical	0	0	junction_4	0.957427107756338	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAGATGCTCACACTT	NA	False	NA	NA	False	AATAAA	-26	NA	97774747	97752382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_97755513_97756669_97756787_97756978_97757131_97764997_97765170_97767198_97767305_97767526_97767712_97774604
ENSMUSG00000022483.18_1	chr15	-	5063	54	FSM	ENSMUSG00000022483.18	ENSMUST00000023123.15	5104	54	15	26	15	-26	multi-exon	TRUE	canonical	0	0	junction_47	3.47415827516495	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATCATTGG	8070	False	NA	NA	False	ATTAAA	-5	NA	97902561	97873508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_97874068_97874522_97874766_97875062_97875251_97875601_97875891_97876218_97876327_97876758_97876813_97877045_97877154_97877265_97877320_97877512_97877621_97877755_97877810_97878026_97878135_97878328_97878437_97878605_97878768_97879395_97879450_97879884_97879939_97880409_97880518_97880796_97880851_97881118_97881173_97881532_97881587_97881841_97881896_97882242_97882351_97882600_97882700_97882884_97882930_97883162_97883217_97883443_97883498_97883743_97883798_97884188_97884243_97884622_97884722_97885173_97885228_97885365_97885465_97885548_97885603_97885964_97886073_97886443_97886498_97886642_97886742_97886828_97886874_97887166_97887266_97888793_97888848_97889224_97889270_97891897_97891952_97892424_97892470_97892748_97892803_97892896_97892951_97893240_97893295_97893983_97894038_97894369_97894424_97894528_97894574_97895192_97895271_97896179_97896285_97896425_97896480_97896579_97896613_97896734_97896768_97897155_97897173_97898283_97898488_97902289
ENSMUSG00000022483.18_3	chr15	-	4259	45	ISM	ENSMUSG00000022483.18	ENSMUST00000088355.12	4862	53	8071	33	2879	-33	3prime_fragment	FALSE	canonical	1	1	junction_18	3.34353638191512	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-16	NA	97894467	97873515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_97874068_97874522_97874766_97875062_97875251_97875601_97875891_97876218_97876327_97876758_97876813_97877045_97877154_97877265_97877320_97877512_97877621_97877755_97877810_97878026_97878135_97878328_97878437_97878605_97878768_97879395_97879450_97879884_97879939_97880409_97880518_97880796_97880851_97881118_97881173_97881532_97881587_97881841_97881896_97882242_97882351_97882600_97882700_97882884_97882930_97883162_97883217_97883443_97883498_97883743_97883798_97884188_97884243_97884622_97884722_97885173_97885228_97885365_97885465_97885548_97885603_97885964_97886073_97886443_97886498_97886642_97886742_97886828_97886874_97887166_97887266_97888793_97888848_97889224_97889270_97891897_97891952_97892424_97892470_97892748_97892803_97892896_97892951_97893240_97893295_97893983_97894038_97894369
ENSMUSG00000022483.18_5	chr15	-	4337	46	ISM	ENSMUSG00000022483.18	ENSMUST00000088355.12	4862	53	7888	33	2696	-33	3prime_fragment	FALSE	canonical	1	1	junction_18	3.3767542308854	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-16	NA	97894650	97873515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_97874068_97874522_97874766_97875062_97875251_97875601_97875891_97876218_97876327_97876758_97876813_97877045_97877154_97877265_97877320_97877512_97877621_97877755_97877810_97878026_97878135_97878328_97878437_97878605_97878768_97879395_97879450_97879884_97879939_97880409_97880518_97880796_97880851_97881118_97881173_97881532_97881587_97881841_97881896_97882242_97882351_97882600_97882700_97882884_97882930_97883162_97883217_97883443_97883498_97883743_97883798_97884188_97884243_97884622_97884722_97885173_97885228_97885365_97885465_97885548_97885603_97885964_97886073_97886443_97886498_97886642_97886742_97886828_97886874_97887166_97887266_97888793_97888848_97889224_97889270_97891897_97891952_97892424_97892470_97892748_97892803_97892896_97892951_97893240_97893295_97893983_97894038_97894369_97894424_97894528
ENSMUSG00000022484.8_1	chr15	+	1736	2	FSM	ENSMUSG00000022484.8	ENSMUST00000001699.8	1909	2	168	5	168	-5	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCTCAAATGGATGGGTT	NA	False	NA	NA	False	AATAAA	-14	NA	102875398	102880323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102876044_102879232
ENSMUSG00000022487.15_0	chr15	-	780	10	FSM	ENSMUSG00000022487.15	ENSMUST00000141364.8	700	10	-23	-57	7	1	multi-exon	FALSE	canonical	3	29	junction_9	37.8499310957182	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAAGTACTTTTTTTTTT	8430	False	NA	2	True	AGTAAA	-20	NA	103338829	103310883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603_103338685_103338782
ENSMUSG00000022487.15_1	chr15	-	701	9	FSM	ENSMUSG00000022487.15	ENSMUST00000023129.15	819	9	62	56	1	0	multi-exon	FALSE	canonical	3	70	junction_8	17.7019596372831	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCAAGTACTTTTTT	8424	False	NA	-2	True	AGTAAA	-16	NA	103338835	103310887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338782
ENSMUSG00000022487.15_5	chr15	-	751	9	FSM	ENSMUSG00000022487.15	ENSMUST00000153930.8	799	9	70	-22	-35	0	multi-exon	FALSE	canonical	3	33	junction_8	29.634228520412	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCAAGTACTTTTTT	8553	False	NA	-2	True	AGTAAA	-16	NA	103338706	103310887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603
ENSMUSG00000022487.15_7	chr15	-	595	8	NIC	ENSMUSG00000022487.15	novel	819	9	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	42.4446818860521	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCAAGTACTTTTTT	8429	False	NA	-2	True	AGTAAA	-16	NA	103338830	103310887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103336766_103336812_103338782
ENSMUSG00000022488.10_11	chr15	+	3018	23	ISM	ENSMUSG00000022488.10	ENSMUST00000047405.9	4725	31	10679	870	10679	2	3prime_fragment	FALSE	canonical	3	15	junction_1	3.55970330270737	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTCCCGCTGGAGCTGC	NA	False	NA	3	True	ATTAAA	-16	NA	103372932	103406367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_103373090_103379655_103379713_103379953_103380051_103381194_103381305_103381465_103381599_103381943_103382026_103382226_103382286_103382479_103382626_103384028_103384162_103384404_103384525_103386704_103386851_103387150_103387283_103390386_103390606_103391941_103392073_103394758_103394857_103394972_103395067_103395219_103395303_103395535_103395617_103398418_103398513_103399337_103399455_103399892_103400003_103401647_103401738_103405838
ENSMUSG00000022488.10_9	chr15	+	4728	31	FSM	ENSMUSG00000022488.10	ENSMUST00000047405.9	4725	31	-6	3	-6	-2	multi-exon	TRUE	canonical	3	15	junction_9	3.63027394130097	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTGTGCGTGGATGTTTG	NA	False	NA	7	True	ATTAAA	-21	NA	103362247	103407234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_103362409_103363397_103363509_103364266_103364360_103368611_103368669_103369965_103370109_103370928_103371020_103371106_103371245_103372792_103372842_103372932_103373090_103379655_103379713_103379953_103380051_103381194_103381305_103381465_103381599_103381943_103382026_103382226_103382286_103382479_103382626_103384028_103384162_103384404_103384525_103386704_103386851_103387150_103387283_103390386_103390606_103391941_103392073_103394758_103394857_103394972_103395067_103395219_103395303_103395535_103395617_103398418_103398513_103399337_103399455_103399892_103400003_103401647_103401738_103405838
ENSMUSG00000022489.7_0	chr15	+	3087	16	FSM	ENSMUSG00000022489.7	ENSMUST00000023132.5	3218	16	131	0	-112	0	multi-exon	FALSE	canonical	2	9	junction_2	5.10163372525573	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103411591	103438479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_103411800_103411887_103412011_103428375_103428490_103429732_103429916_103430079_103430147_103430471_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
ENSMUSG00000022489.7_10	chr15	+	2319	11	NNC	ENSMUSG00000022489.7	novel	923	3	NA	NA	-1087	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	6.31268564083465	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103431057	103438479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_103431102_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
ENSMUSG00000022489.7_11	chr15	+	1494	3	ISM	ENSMUSG00000022489.7	ENSMUST00000227955.2	3258	15	12623	1	3825	0	3prime_fragment	FALSE	canonical	3	17	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATGTGTGTGGTGTTCA	NA	False	NA	8	True	AATAAA	-14	NA	103435969	103438478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_103436103_103436648_103436772_103437240
ENSMUSG00000022489.7_16	chr15	+	2479	13	ISM	ENSMUSG00000022489.7	ENSMUST00000227955.2	3258	15	6549	0	-2249	0	3prime_fragment	FALSE	canonical	2	10	junction_1	4.11214326382511	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103429895	103438479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_103429916_103430079_103430147_103430471_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
ENSMUSG00000022489.7_18	chr15	+	2269	10	ISM	ENSMUSG00000022489.7	ENSMUST00000227955.2	3258	15	9388	6	590	-5	3prime_fragment	FALSE	canonical	2	14	junction_7	3.2659863237109	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGGCTGGATGTGTGTGGT	NA	False	NA	3	True	AATAAA	-9	NA	103432734	103438473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
ENSMUSG00000022489.7_3	chr15	+	3867	15	FSM	ENSMUSG00000022489.7	ENSMUST00000227955.2	3258	15	-609	0	-609	0	multi-exon	FALSE	canonical	2	3	junction_1	6.01740672328781	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103422737	103438479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_103423849_103428375_103428490_103429732_103429916_103430079_103430147_103430471_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
ENSMUSG00000022489.7_7	chr15	+	2674	11	ISM	ENSMUSG00000022489.7	ENSMUST00000227955.2	3258	15	6843	0	-1955	0	3prime_fragment	FALSE	canonical	2	14	junction_8	3.36005952328229	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103430189	103438479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
ENSMUSG00000022490.8_0	chr15	-	741	7	FSM	ENSMUSG00000022490.8	ENSMUST00000023133.8	1306	7	4	561	4	-146	multi-exon	FALSE	canonical	3	176	junction_5	12.4688500761787	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGAGCTTTTCTTCTTTC	2056	False	NA	-38	True	GATAAA	-15	NA	103446426	103439266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103439377_103439780_103439888_103440752_103440909_103441464_103441529_103441883_103441922_103442776_103442838_103446221
ENSMUSG00000022490.8_8	chr15	-	1208	6	FSM	ENSMUSG00000022490.8	ENSMUST00000228813.2	821	6	19	-406	19	-9	multi-exon	FALSE	canonical	1	3	junction_5	80.2331602269286	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGACAAGATTCTTTCAC	2080	False	NA	NA	False	ATTAAA	-12	NA	103446402	103438714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103439377_103439780_103439888_103440752_103440909_103441464_103441529_103441883_103441922_103446221
ENSMUSG00000022498.17_1	chr16	-	2971	11	NIC	ENSMUSG00000022498.17	novel	3095	12	NA	NA	1	-10	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	28.318898283655	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATGAACTCGAATGTC	8535	False	NA	NA	False	AATAAA	-19	NA	10952513	10892784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_10893507_10897567_10897649_10902071_10902182_10902614_10902758_10905640_10906434_10909449_10909651_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
ENSMUSG00000022498.17_2	chr16	-	3078	12	FSM	ENSMUSG00000022498.17	ENSMUST00000038424.14	3095	12	7	10	7	-10	multi-exon	FALSE	canonical	3	63	junction_7	19.5329769897639	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATGAACTCGAATGTC	8541	False	NA	NA	False	AATAAA	-19	NA	10952507	10892784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_10893507_10897567_10897649_10902071_10902182_10902614_10902758_10905640_10906434_10909449_10909651_10911679_10911793_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
ENSMUSG00000022498.17_22	chr16	-	4275	8	FSM	ENSMUSG00000022498.17	ENSMUST00000118362.8	4248	8	-38	11	1	-11	multi-exon	FALSE	canonical	3	63	junction_3	22.088874288812	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAAAAGCTTCTGGTCT	8535	False	NA	NA	False	AATAAA	-3	NA	10952513	10903393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_10906434_10909449_10909651_10911679_10911793_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
ENSMUSG00000022498.17_23	chr16	-	4162	7	FSM	ENSMUSG00000022498.17	ENSMUST00000145225.8	2381	7	-76	-1705	1	-11	multi-exon	FALSE	canonical	3	19	junction_2	35.2120560162125	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAAAAGCTTCTGGTCT	8535	False	NA	NA	False	AATAAA	-3	NA	10952513	10903393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_10906434_10909449_10909651_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
ENSMUSG00000022498.17_24	chr16	-	1131	5	NIC	ENSMUSG00000022498.17	novel	1145	5	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	43.4798804046193	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGAACTCTTTATCTC	8546	False	NA	NA	False	TTTAAA	-6	NA	10952502	10923820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_10924136_10934658_10934789_10940533_10940632_10946350_10946568_10952131
ENSMUSG00000022500.16_0	chr16	-	1985	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	22	228	22	-228	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTTTATGAAGAAAGGCC	NA	False	NA	5	True	AATAAA	-32	NA	10810963	10777366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
ENSMUSG00000022500.16_5	chr16	-	1934	3	ISM	ENSMUSG00000022500.16	ENSMUST00000117360.8	763	4	8929	-1323	8929	-226	3prime_fragment	FALSE	canonical	3	340	junction_2	14	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTATGAAGAAAGGCCTT	8635	False	NA	7	True	AATAAA	-34	NA	10784514	10777364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_10778916_10781120_10781278_10784288
ENSMUSG00000022503.11_0	chr16	+	1228	11	FSM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	-5	898	-5	184	multi-exon	FALSE	canonical	3	699	junction_1	76.2262422004391	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCTTAGGGCCTGCTTCC	NA	False	NA	16	True	AATAAA	-18	NA	10229806	10241394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
ENSMUSG00000022504.11_2	chr16	+	2515	9	ISM	ENSMUSG00000022504.11	ENSMUST00000230146.2	3953	19	23388	-1135	23386	-857	3prime_fragment	TRUE	canonical	0	0	junction_7	1.4790199457749	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGATGGCTGCCATCTTT	NA	False	NA	NA	False	NA	NA	NA	10331032	10345425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_10331152_10332300_10332373_10335551_10335633_10336157_10336251_10338831_10338919_10341582_10341667_10341776_10341861_10343030_10343128_10343627
ENSMUSG00000022504.11_3	chr16	+	1314	7	ISM	ENSMUSG00000022504.11	ENSMUST00000230146.2	3953	19	27778	4	27776	-4	3prime_fragment	FALSE	canonical	0	0	junction_5	1.60727512683216	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGCTCTGGGGCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	10335422	10344286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_10335633_10336157_10336251_10338831_10338919_10341582_10341667_10341776_10341861_10343030_10343128_10343627
ENSMUSG00000022505.10_0	chr16	-	3406	5	FSM	ENSMUSG00000022505.10	ENSMUST00000078357.5	3440	5	24	10	24	-10	multi-exon	FALSE	canonical	3	117	junction_1	14.2894191624432	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATTTGGATAATTGTA	NA	False	NA	-15	True	ATTAAA	-21	NA	10131808	10099622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_10102480_10103318_10103466_10105918_10106025_10110125_10110289_10131675
ENSMUSG00000022505.10_3	chr16	-	2146	1	ISM	ENSMUSG00000022505.10	ENSMUST00000078357.5	3440	5	30064	10	29967	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATTTGGATAATTGTA	NA	False	NA	-15	True	ATTAAA	-21	NA	10101768	10099622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_10099600_10101800
ENSMUSG00000022507.7_0	chr16	+	1789	3	ISM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	37	14796	37	-5	5prime_fragment	FALSE	canonical	3	177	junction_1	10	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGGCTTCCGTGTCAT	9981	False	NA	3	True	AATAAA	-14	NA	8648000	8661990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_8648550_8649184_8649266_8660831
ENSMUSG00000022507.7_10	chr16	+	2608	2	ISM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	12942	723	11721	-723	3prime_fragment	FALSE	canonical	3	157	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCACTGGTTACTTTTTTC	NA	False	NA	20	True	ATTAAA	-15	NA	8660905	8676063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_8661108_8673657
ENSMUSG00000022507.7_12	chr16	+	1984	1	ISM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	26117	722	24896	-722	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGGTTACTTTTTTCC	NA	False	NA	21	True	ATTAAA	-16	NA	8674080	8676064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_8674100_8676100
ENSMUSG00000022507.7_2	chr16	+	3311	4	FSM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	38	723	38	-723	multi-exon	FALSE	canonical	3	157	junction_3	16.3299316185545	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCACTGGTTACTTTTTTC	9982	False	NA	20	True	ATTAAA	-15	NA	8648001	8676063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_8648550_8649184_8649266_8660831_8661108_8673657
ENSMUSG00000022508.6_1	chr16	-	3297	10	FSM	ENSMUSG00000022508.6	ENSMUST00000023151.6	3525	10	221	7	221	-7	multi-exon	FALSE	canonical	0	0	junction_5	2.06080411011016	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTCGAGCTGGCTCTTT	NA	False	NA	-8	True	AATAAA	-7	NA	23807381	23783808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_23785019_23786809_23786948_23787056_23787188_23788655_23788824_23790164_23790350_23790994_23791970_23793562_23793785_23796264_23796437_23797300_23797340_23807324
ENSMUSG00000022514.15_0	chr16	+	1914	8	FSM	ENSMUSG00000022514.15	ENSMUST00000174202.8	2306	8	-23	415	-12	-415	multi-exon	FALSE	canonical	3	10	junction_5	3.88087934491604	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTACAAATCCTTCTTG	NA	False	NA	NA	False	AATAAA	-3	NA	26400479	26520691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_26400637_26442904_26442970_26495458_26495745_26498852_26499040_26511494_26511661_26513971_26514044_26517576_26517704_26519837
ENSMUSG00000022514.15_1	chr16	+	4547	11	FSM	ENSMUSG00000022514.15	ENSMUST00000023156.13	4520	11	-31	4	-16	-4	multi-exon	FALSE	canonical	1	2	junction_10	6.68505796534331	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTTATTTTGTGCATG	NA	False	NA	NA	False	AATAAA	-18	NA	26400475	26536490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_26400637_26442904_26442970_26495458_26495745_26498852_26499040_26511494_26511661_26513971_26514044_26517576_26517704_26519837_26519987_26529230_26529381_26530866_26531011_26533450
ENSMUSG00000022515.7_0	chr16	-	2416	17	FSM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	-20	2	-1	-2	multi-exon	TRUE	canonical	3	59	junction_1	12.8608842522589	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGTGGGGGCTCATTT	8203	False	NA	-7	True	AATAAA	-11	NA	4782057	4759301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
ENSMUSG00000022515.7_1	chr16	-	2328	16	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	20.4717691793683	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGTGGGGGCTCATTT	8202	False	NA	-7	True	AATAAA	-11	NA	4782058	4759301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_4759662_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
ENSMUSG00000022515.7_17	chr16	-	3144	1	NIC	ENSMUSG00000022515.7	novel	1289	9	NA	NA	-340	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGTGGGGGCTCATTT	7287	False	NA	-7	True	AATAAA	-11	NA	4762445	4759301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_4759300_4762400
ENSMUSG00000022515.7_8	chr16	-	2048	15	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	2	6	junction_14	24.9154693362356	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGTGGGGGCTCATTT	8200	False	NA	-7	True	AATAAA	-11	NA	4782060	4759301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4781983
ENSMUSG00000022516.11_0	chr16	+	1255	3	FSM	ENSMUSG00000022516.11	ENSMUST00000230931.2	1618	3	358	5	-3	-2	multi-exon	FALSE	canonical	3	527	junction_2	18	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCATGTTGCTTCTGAG	102	False	NA	7	True	AATAAA	-13	NA	4756982	4758878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4757158_4757241_4757503_4758059
ENSMUSG00000022516.11_3	chr16	+	1810	2	FSM	ENSMUSG00000022516.11	ENSMUST00000230224.2	660	2	-7	-1143	-1	-2	multi-exon	FALSE	canonical	3	563	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCATGTTGCTTCTGAG	104	False	NA	7	True	AATAAA	-13	NA	4756984	4758878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4757158_4757241
ENSMUSG00000022517.18_3	chr16	+	3130	17	FSM	ENSMUSG00000022517.18	ENSMUST00000070658.16	3138	17	1	7	1	-6	multi-exon	FALSE	canonical	3	137	junction_15	100.835804033091	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATATTCTATGTGTGCC	2928	False	NA	7	True	AATAAA	-8	NA	4704116	4756153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759
ENSMUSG00000022517.18_5	chr16	+	3082	16	FSM	ENSMUSG00000022517.18	ENSMUST00000023159.10	3095	16	7	6	4	-6	multi-exon	TRUE	canonical	3	266	junction_15	54.4223810169636	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATATTCTATGTGTGCC	2931	False	NA	7	True	AATAAA	-8	NA	4704119	4756153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759
ENSMUSG00000022517.18_6	chr16	+	3201	18	NIC	ENSMUSG00000022517.18	novel	3138	17	NA	NA	-1	-3	combination_of_known_junctions	FALSE	canonical	3	83	junction_12	136.27729719254	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTCTATGTGTGCCTTT	2926	False	NA	10	True	AATAAA	-11	NA	4704114	4756156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4744172_4744239_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759
ENSMUSG00000022517.18_7	chr16	+	3148	17	NIC	ENSMUSG00000022517.18	novel	2519	17	NA	NA	4	-6	combination_of_known_junctions	FALSE	canonical	3	83	junction_12	118.010592744889	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATATTCTATGTGTGCC	2931	False	NA	7	True	AATAAA	-8	NA	4704119	4756153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4744172_4744239_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759
ENSMUSG00000022517.18_9	chr16	+	3085	16	NIC	ENSMUSG00000022517.18	novel	2250	17	NA	NA	4	-6	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	107.073474254312	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATATTCTATGTGTGCC	2931	False	NA	7	True	AATAAA	-8	NA	4704119	4756153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_4704338_4725228_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759
ENSMUSG00000022519.15_0	chr16	-	3744	6	NIC	ENSMUSG00000022519.15	novel	5000	7	NA	NA	11	2	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	3.76297754444536	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGCCTTGGCCTTCTTGAT	NA	False	NA	-1	True	AATAAA	-17	NA	4359667	4298077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311745_4359543
ENSMUSG00000022519.15_10	chr16	-	2107	1	ISM	ENSMUSG00000022519.15	ENSMUST00000090500.10	3698	6	40753	0	40741	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACGCCTTGGCCTTCTTG	NA	False	NA	-3	True	AATAAA	-15	NA	4300186	4298079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_4298100_4300200
ENSMUSG00000022519.15_2	chr16	-	3804	6	NNC	ENSMUSG00000022519.15	novel	3698	6	NA	NA	27006	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_5	11.1821285987955	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACGCCTTGGCCTTCTTG	6789	False	NA	-3	True	AATAAA	-15	NA	4313921	4298079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311745_4313735
ENSMUSG00000022519.15_5	chr16	-	3730	6	NIC	ENSMUSG00000022519.15	novel	3698	6	NA	NA	22	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	11.9498953970317	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGCCTTGGCCTTCTTGAT	NA	False	NA	-1	True	AATAAA	-17	NA	4359656	4298077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311742_4359543
ENSMUSG00000022519.15_6	chr16	-	3707	6	NNC	ENSMUSG00000022519.15	novel	5000	7	NA	NA	27011	2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	10.4192130221049	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGCCTTGGCCTTCTTGAT	6794	False	NA	-1	True	AATAAA	-17	NA	4313916	4298077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311745_4313829
ENSMUSG00000022521.11_0	chr16	-	2392	1	ISM	ENSMUSG00000022521.11	ENSMUST00000023165.9	10820	31	128806	1472	3404	901	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGTATTCTGTTCTTTA	5607	False	NA	-22	True	TATAAA	-38	NA	3903055	3900663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3900700_3903100
ENSMUSG00000022521.11_11	chr16	-	3666	3	ISM	ENSMUSG00000022521.11	ENSMUST00000205765.2	7749	30	125009	-725	191	725	3prime_fragment	FALSE	canonical	3	49	junction_2	7.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAAGGGTGGTCCTTCTTG	2394	False	NA	-3	True	AATAAA	-16	NA	3906268	3900839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3904063_3905544_3905827_3906107
ENSMUSG00000022521.11_14	chr16	-	3981	5	ISM	ENSMUSG00000022521.11	ENSMUST00000205765.2	7749	30	121078	-725	2309	725	3prime_fragment	FALSE	canonical	3	49	junction_2	6.59545297913646	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAAGGGTGGTCCTTCTTG	NA	False	NA	-3	True	AATAAA	-16	NA	3910199	3900839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3904063_3905544_3905827_3906107_3906270_3909655_3909824_3910053
ENSMUSG00000022521.11_15	chr16	-	5510	16	ISM	ENSMUSG00000022521.11	ENSMUST00000205765.2	7749	30	98448	-898	11637	898	3prime_fragment	FALSE	canonical	3	34	junction_9	9.13211670728947	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACATGTATTCTGTTCT	NA	False	NA	-25	True	TATAAA	-35	NA	3932829	3900666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3904063_3905544_3905827_3906107_3906270_3909655_3909824_3910053_3910220_3911335_3911450_3912037_3912185_3912499_3912651_3913926_3913995_3914304_3914383_3917538_3917596_3919421_3919503_3925291_3925381_3925899_3926140_3926963_3927083_3932637
ENSMUSG00000022521.11_18	chr16	-	4691	10	ISM	ENSMUSG00000022521.11	ENSMUST00000205765.2	7749	30	116918	-880	-369	880	3prime_fragment	FALSE	canonical	3	34	junction_9	10.1980390271856	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAATTACTGAAGTTTT	NA	False	NA	-43	True	TATAAA	-17	NA	3914359	3900684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3904063_3905544_3905827_3906107_3906270_3909655_3909824_3910053_3910220_3911335_3911450_3912037_3912185_3912499_3912651_3913926_3913995_3914304
ENSMUSG00000022521.11_21	chr16	-	3872	4	ISM	ENSMUSG00000022521.11	ENSMUST00000205765.2	7749	30	121572	-880	-2098	880	3prime_fragment	FALSE	canonical	3	49	junction_2	6.48074069840786	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAATTACTGAAGTTTT	NA	False	NA	-43	True	TATAAA	-17	NA	3909705	3900684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3904063_3905544_3905827_3906107_3906270_3909655
ENSMUSG00000022521.11_23	chr16	-	5239	28	ISM	ENSMUSG00000022521.11	ENSMUST00000023165.9	10820	31	207	10523	207	-12	5prime_fragment	FALSE	canonical	3	32	junction_27	7.60459755529851	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAGAAGAAGAAGAAAGG	6219	False	NA	NA	False	AAGAAA	-16	NA	4031654	3909714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3909824_3910053_3910220_3911335_3911450_3912037_3912185_3912499_3912651_3913926_3913995_3914304_3914383_3917538_3917596_3919421_3919503_3925291_3925381_3925899_3926140_3926963_3927083_3932637_3932828_3933641_3933822_3935118_3935533_3936896_3937086_3937595_3937721_3942033_3942079_3942499_3942672_3943508_3943627_3944330_3944478_3944733_3944837_3946307_3946551_3955229_3955344_3956608_3956850_3972720_3972898_3997287_3997998_4031002
ENSMUSG00000022521.11_4	chr16	-	5102	14	ISM	ENSMUSG00000022521.11	ENSMUST00000205765.2	7749	30	105238	-901	-12049	901	3prime_fragment	FALSE	canonical	3	34	junction_9	9.64395754655542	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGTATTCTGTTCTTTA	3183	False	NA	-22	True	TATAAA	-38	NA	3926039	3900663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3904063_3905544_3905827_3906107_3906270_3909655_3909824_3910053_3910220_3911335_3911450_3912037_3912185_3912499_3912651_3913926_3913995_3914304_3914383_3917538_3917596_3919421_3919503_3925291_3925381_3925899
ENSMUSG00000022521.11_5	chr16	-	4370	8	ISM	ENSMUSG00000022521.11	ENSMUST00000205765.2	7749	30	118663	-718	-106	718	3prime_fragment	FALSE	canonical	3	35	junction_7	9.06214372980212	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGACAAAAAGGGTGGTC	NA	False	NA	-10	True	AATAAA	-9	NA	3912614	3900846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3904063_3905544_3905827_3906107_3906270_3909655_3909824_3910053_3910220_3911335_3911450_3912037_3912185_3912499
ENSMUSG00000022521.11_6	chr16	-	9334	31	FSM	ENSMUSG00000022521.11	ENSMUST00000023165.9	10820	31	13	1473	13	900	multi-exon	FALSE	canonical	3	32	junction_30	8.09416799649943	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACATGTATTCTGTTCTTT	6025	False	NA	-23	True	TATAAA	-37	NA	4031848	3900664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_3904063_3905544_3905827_3906107_3906270_3909655_3909824_3910053_3910220_3911335_3911450_3912037_3912185_3912499_3912651_3913926_3913995_3914304_3914383_3917538_3917596_3919421_3919503_3925291_3925381_3925899_3926140_3926963_3927083_3932637_3932828_3933641_3933822_3935118_3935533_3936896_3937086_3937595_3937721_3942033_3942079_3942499_3942672_3943508_3943627_3944330_3944478_3944733_3944837_3946307_3946551_3955229_3955344_3956608_3956850_3972720_3972898_3997287_3997998_4031002
ENSMUSG00000022521.11_8	chr16	-	3493	2	ISM	ENSMUSG00000022521.11	ENSMUST00000205765.2	7749	30	125618	-880	800	880	3prime_fragment	FALSE	canonical	3	64	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAATTACTGAAGTTTT	3003	False	NA	-43	True	TATAAA	-17	NA	3905659	3900684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3904063_3905544
ENSMUSG00000022526.9_0	chr15	-	3999	4	FSM	ENSMUSG00000022526.9	ENSMUST00000080406.7	4036	4	29	8	2	-8	multi-exon	FALSE	canonical	3	11	junction_3	4.24264068711928	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAATATCAGTCTGTA	NA	False	NA	NA	False	ATTAAA	-9	NA	76755606	76735816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76738815_76754006_76754121_76754481_76754615_76754852
ENSMUSG00000022526.9_1	chr15	-	4243	3	FSM	ENSMUSG00000022526.9	ENSMUST00000229494.2	2855	3	0	-1388	0	-13	multi-exon	FALSE	canonical	3	20	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTGAAAATCAATATCAGT	NA	False	NA	NA	False	ATTAAA	-4	NA	76755617	76735821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76738815_76754006_76754121_76754481
ENSMUSG00000022526.9_8	chr15	-	3865	3	FSM	ENSMUSG00000022526.9	ENSMUST00000230315.2	3337	3	3	-531	3	-8	multi-exon	FALSE	canonical	0	0	junction_2	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAATATCAGTCTGTA	NA	False	NA	NA	False	ATTAAA	-9	NA	76755605	76735816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76738815_76754006_76754121_76754852
ENSMUSG00000022528.9_4	chr16	+	1117	1	NIC	ENSMUSG00000022528.9	novel	1468	4	NA	NA	340	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCTTAGAACTGATTAT	NA	False	NA	14	True	AATAAA	-15	NA	29885495	29886612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_29885500_29886600
ENSMUSG00000022528.9_5	chr16	+	1463	4	FSM	ENSMUSG00000022528.9	ENSMUST00000023171.8	1468	4	4	1	4	-1	multi-exon	FALSE	canonical	3	729	junction_2	50.3388517946129	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTTAGAACTGATTATT	NA	False	NA	15	True	AATAAA	-16	NA	29884161	29886613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_29884517_29884648_29884745_29884980_29885069_29885689
ENSMUSG00000022529.12_0	chr16	+	3220	6	FSM	ENSMUSG00000022529.12	ENSMUST00000023176.5	3241	6	21	0	21	0	multi-exon	FALSE	canonical	3	89	junction_1	57.158026557956	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACATGAATATGTATAAAT	NA	False	NA	3	True	AATAAA	-12	NA	3561977	3568645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_3562632_3563640_3563822_3564285_3564360_3564634_3564759_3566012_3566130_3566575
ENSMUSG00000022529.12_2	chr16	+	3962	6	FSM	ENSMUSG00000022529.12	ENSMUST00000161630.8	3856	6	-115	9	24	0	multi-exon	FALSE	canonical	2	13	junction_1	76.2532622252976	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACATGAATATGTATAAAT	NA	False	NA	3	True	AATAAA	-12	NA	3561980	3568645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_3563377_3563640_3563822_3564285_3564360_3564634_3564759_3566012_3566130_3566575
ENSMUSG00000022529.12_8	chr16	+	1598	1	ISM	ENSMUSG00000022529.12	ENSMUST00000023176.5	3241	6	5091	0	1297	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACATGAATATGTATAAAT	3219	False	NA	3	True	AATAAA	-12	NA	3567047	3568645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_3567000_3568600
ENSMUSG00000022533.15_0	chr16	-	7497	33	FSM	ENSMUSG00000022533.15	ENSMUST00000061350.13	7220	33	-295	18	12	-18	multi-exon	TRUE	canonical	3	211	junction_18	25.9578986052415	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTTTAATGAATTAAATA	NA	False	NA	NA	False	AATAAA	-1	NA	30207643	30131258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_30134720_30141689_30141771_30147773_30147863_30151016_30151205_30152576_30152746_30155007_30155081_30156319_30156417_30157249_30157360_30157444_30157488_30158430_30158511_30158593_30158717_30159040_30159217_30159970_30160096_30162251_30162373_30162460_30162615_30162707_30162726_30163339_30163457_30166443_30166595_30166867_30166930_30168502_30168692_30169780_30169939_30170046_30170227_30171085_30171218_30173049_30173123_30174570_30174706_30176022_30176093_30178486_30178568_30180237_30180309_30180631_30180803_30181393_30181568_30185652_30185754_30206424_30206471_30207165
ENSMUSG00000022533.15_2	chr16	-	2428	1	ISM	ENSMUSG00000022533.15	ENSMUST00000061350.13	7220	33	73673	7	18991	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAATATGTCAATATTT	NA	False	NA	NA	False	AATAAA	-12	NA	30133675	30131247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_30131200_30133700
ENSMUSG00000022533.15_3	chr16	-	7579	34	FSM	ENSMUSG00000022533.15	ENSMUST00000100013.9	7310	34	-295	26	12	-26	multi-exon	FALSE	canonical	3	161	junction_1	36.4499984569475	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAAATTTTAATGA	NA	False	NA	NA	False	ATTAAA	-8	NA	30207643	30131266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_30134720_30140623_30140714_30141689_30141771_30147773_30147863_30151016_30151205_30152576_30152746_30155007_30155081_30156319_30156417_30157249_30157360_30157444_30157488_30158430_30158511_30158593_30158717_30159040_30159217_30159970_30160096_30162251_30162373_30162460_30162615_30162707_30162726_30163339_30163457_30166443_30166595_30166867_30166930_30168502_30168692_30169780_30169939_30170046_30170227_30171085_30171218_30173049_30173123_30174570_30174706_30176022_30176093_30178486_30178568_30180237_30180309_30180631_30180803_30181393_30181568_30185652_30185754_30206424_30206471_30207165
ENSMUSG00000022536.15_0	chr16	-	3294	16	FSM	ENSMUSG00000022536.15	ENSMUST00000115844.3	3292	16	-2	0	-2	0	multi-exon	FALSE	canonical	3	744	junction_6	120.52477845747	1567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8114	False	NA	-8	True	AATAAA	-13	NA	4867723	4831772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
ENSMUSG00000022536.15_5	chr16	-	3277	16	FSM	ENSMUSG00000022536.15	ENSMUST00000023189.15	3280	16	3	0	-3	0	multi-exon	FALSE	canonical	3	303	junction_6	221.604291976086	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8113	False	NA	-8	True	AATAAA	-13	NA	4867724	4831772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
ENSMUSG00000022537.19_0	chr16	-	2146	11	NIC	ENSMUSG00000022537.19	novel	4331	12	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	5.46260011349907	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGTCTCACGGTGGAG	NA	False	NA	NA	False	AATAAA	-18	NA	30369383	30332787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_30333641_30337117_30337151_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30359728_30362219_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
ENSMUSG00000022537.19_1	chr16	-	2372	10	FSM	ENSMUSG00000022537.19	ENSMUST00000140402.8	2405	10	32	1	-7	-1	multi-exon	FALSE	canonical	3	16	junction_1	4.30618275001691	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGGCTCTCGGCTCTCT	NA	False	NA	NA	False	NA	NA	NA	30369364	30332509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_30333641_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30359728_30362219_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
ENSMUSG00000022537.19_12	chr16	-	4574	9	NIC	ENSMUSG00000022537.19	novel	2405	10	NA	NA	-7	-12	intron_retention	FALSE	canonical	3	16	junction_1	4.29934588047996	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGAATGAGTTAAAACCGT	NA	False	NA	NA	False	AATAAA	-6	NA	30369364	30332799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_30333641_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
ENSMUSG00000022537.19_3	chr16	-	1819	1	ISM	ENSMUSG00000022537.19	ENSMUST00000144491.8	4579	10	36271	2	27234	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCTGGTTTATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	30332493	30330674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_30330700_30332500
ENSMUSG00000022537.19_4	chr16	-	4882	6	ISM	ENSMUSG00000022537.19	ENSMUST00000089775.11	4331	12	8360	5	1287	-5	3prime_fragment	FALSE	canonical	3	13	junction_1	5.42586398650021	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAATGCCTGGTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	30361028	30330677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_30333641_30337117_30337151_30348229_30348389_30356271_30356377_30358206_30358357_30359556
ENSMUSG00000022537.19_8	chr16	-	4639	10	NIC	ENSMUSG00000022537.19	novel	4331	12	NA	NA	0	-4	intron_retention	FALSE	canonical	3	13	junction_1	5.43650214343336	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAAAACCGTCTCACGGT	NA	False	NA	NA	False	AATAAA	-14	NA	30369388	30332791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_30333641_30337117_30337151_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
ENSMUSG00000022538.21_0	chr16	-	2267	14	FSM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	34	879	5	-2	multi-exon	FALSE	canonical	2	298	junction_4	64.525303508774	651	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGTTGATATTCTTATTG	NA	False	NA	-10	True	ATTAAA	-12	NA	30406376	30380190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
ENSMUSG00000022540.17_0	chr16	-	1373	11	FSM	ENSMUSG00000022540.17	ENSMUST00000202281.4	1355	11	-18	0	1	0	multi-exon	FALSE	canonical	3	412	junction_7	47.5572286829247	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831399	4826593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ENSMUSG00000022540.17_1	chr16	-	1921	10	NIC	ENSMUSG00000022540.17	novel	1431	11	NA	NA	1	0	intron_retention	FALSE	canonical	3	413	junction_6	42.8808282580778	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831399	4826593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4830160_4830290_4830374_4831166_4831239_4831326
ENSMUSG00000022544.15_0	chr16	-	2127	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	35	8	-7	-8	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAGATTATGTGCGCAT	NA	False	NA	-10	True	NA	NA	NA	5073812	5062023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000022544.15_1	chr16	-	1385	8	NNC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	-7	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	166.156061384151	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACTGTCCTGTCAGACA	NA	False	NA	-4	True	AATAAA	-18	NA	5073812	5062741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_5063250_5065340_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000022544.15_11	chr16	-	1164	7	FSM	ENSMUSG00000022544.15	ENSMUST00000139584.2	987	7	8	-185	-7	185	multi-exon	FALSE	canonical	3	438	junction_1	22.2517165380311	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGCACCTGAGATGTATC	NA	False	NA	NA	False	NA	NA	NA	5073812	5065053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000022544.15_6	chr16	-	1491	7	NIC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	-7	2	intron_retention	FALSE	canonical	3	270	junction_1	79.2199820471802	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTGTCCTGTCAGACAG	NA	False	NA	-3	True	AATAAA	-19	NA	5073812	5062740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_5063250_5065316_5065464_5066428_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000022545.14_18	chr16	+	5487	10	NIC	ENSMUSG00000022545.14	novel	3480	11	NA	NA	114	-2	intron_retention	FALSE	canonical	3	54	junction_5	8.2192186706253	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTGGTTTCTCAGTGT	NA	False	NA	9	True	AATAAA	-12	NA	12927661	12966596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12950815_12962264_12962378_12965389
ENSMUSG00000022545.14_2	chr16	+	3411	11	FSM	ENSMUSG00000022545.14	ENSMUST00000023206.14	3480	11	65	4	65	-4	multi-exon	FALSE	canonical	0	0	junction_8	21.466252583998	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTCTTGGTTTCTCAGT	NA	False	NA	7	True	AATAAA	-10	NA	12927612	12966594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12948599_12950721_12950815_12962264_12962378_12965389
ENSMUSG00000022545.14_26	chr16	+	4566	2	ISM	ENSMUSG00000022545.14	ENSMUST00000129049.2	5130	10	29359	1887	8762	-4	3prime_fragment	FALSE	canonical	3	66	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTCTTGGTTTCTCAGT	NA	False	NA	7	True	AATAAA	-10	NA	12959016	12966594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_12962378_12965389
ENSMUSG00000022545.14_6	chr16	+	2413	8	ISM	ENSMUSG00000022545.14	ENSMUST00000023206.14	3480	11	-21	17673	-21	3431	5prime_fragment	FALSE	canonical	3	54	junction_5	9.19183310979738	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCACCCTGTAAAATCT	NA	False	NA	NA	False	AATATA	-32	NA	12927526	12948925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997
ENSMUSG00000022545.14_8	chr16	+	3699	11	NIC	ENSMUSG00000022545.14	novel	3480	11	NA	NA	65	-4	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	14.2270868416553	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTCTTGGTTTCTCAGT	NA	False	NA	7	True	AATAAA	-10	NA	12927612	12966594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12948887_12950721_12950815_12962264_12962378_12965389
ENSMUSG00000022546.6_5	chr15	+	995	6	FSM	ENSMUSG00000022546.6	ENSMUST00000229140.2	982	6	-15	2	-15	-2	multi-exon	FALSE	canonical	3	10	junction_4	4.40908153700972	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGAGGTGGCTGCCTGG	5974	False	NA	0	True	AATAAA	-16	NA	76582395	76583846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76582583_76582655_76582793_76582914_76583090_76583195_76583352_76583435_76583549_76583619
ENSMUSG00000022548.15_0	chr16	-	802	4	ISM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	3445	-34	199	0	3prime_fragment	FALSE	canonical	3	139	junction_3	14.7044966667419	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	NA	False	NA	-4	True	AATAAA	-12	NA	31129967	31115939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831
ENSMUSG00000022548.15_1	chr16	-	916	6	FSM	ENSMUSG00000022548.15	ENSMUST00000130560.8	2074	6	230	928	16	2	multi-exon	FALSE	canonical	3	43	junction_5	47.7887015935775	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGTTTCCTGTGGATT	8726	False	NA	-2	True	AATAAA	-14	NA	31133396	31115937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216_31133287_31133369
ENSMUSG00000022548.15_2	chr16	-	947	5	FSM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	65	-33	65	-1	multi-exon	FALSE	canonical	3	104	junction_4	27.2614654778499	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCAGCTGTGTTTCCTGTGG	8775	False	NA	-5	True	AATAAA	-11	NA	31133347	31115940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216
ENSMUSG00000022548.15_3	chr16	-	917	3	FSM	ENSMUSG00000022548.15	ENSMUST00000155682.2	422	3	-102	-393	-102	2	multi-exon	FALSE	canonical	3	168	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGTTTCCTGTGGATT	NA	False	NA	-2	True	AATAAA	-14	NA	31122598	31115937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31116395_31119212_31119302_31122227
ENSMUSG00000022548.15_4	chr16	-	649	2	ISM	ENSMUSG00000022548.15	ENSMUST00000155682.2	422	3	3090	-391	2857	0	3prime_fragment	FALSE	canonical	3	168	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	NA	False	NA	-4	True	AATAAA	-12	NA	31119406	31115939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_31116395_31119212
ENSMUSG00000022548.15_5	chr16	-	3112	5	Fusion	ENSMUSG00000116617.2_ENSMUSG00000022548.15	novel	362	2	NA	NA	124	228	multi-exon	FALSE	canonical	2	3	junction_1	63.3423239232663	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGATGTTGCTATTATCA	8834	False	NA	NA	False	NA	NA	NA	31133288	31103013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr16_-_31105692_31119212_31119302_31122227_31122350_31129831_31129983_31133216
ENSMUSG00000022550.19_0	chr15	+	1978	15	FSM	ENSMUSG00000022550.19	ENSMUST00000162503.8	2040	15	55	7	0	0	multi-exon	FALSE	canonical	3	114	junction_10	17.9268638913668	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAATCGTTTTCTTTGT	3157	False	NA	NA	False	NA	NA	NA	76460612	76480009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
ENSMUSG00000022550.19_10	chr15	+	1943	15	FSM	ENSMUSG00000022550.19	ENSMUST00000161732.8	2026	15	73	10	19	-10	multi-exon	FALSE	canonical	2	13	junction_4	36.3298381892508	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTCGTCTGAAAGAAATC	3176	False	NA	NA	False	NA	NA	NA	76460631	76479998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477635_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
ENSMUSG00000022550.19_17	chr15	+	2043	14	NIC	ENSMUSG00000022550.19	novel	2040	15	NA	NA	13	0	intron_retention	FALSE	canonical	3	114	junction_9	18.1199161407206	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAATCGTTTTCTTTGT	3170	False	NA	NA	False	NA	NA	NA	76460625	76480009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
ENSMUSG00000022550.19_20	chr15	+	641	4	FSM	ENSMUSG00000022550.19	ENSMUST00000159949.8	747	4	10	96	2	-96	multi-exon	FALSE	canonical	1	2	junction_3	73.1619208787376	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATTTGTAGATTGATTAT	3159	False	NA	NA	False	NA	NA	NA	76460614	76475927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76475620
ENSMUSG00000022551.9_0	chr15	+	1176	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	14	330	4	-2	multi-exon	FALSE	canonical	3	4240	junction_5	258.32822575596	2499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACACATTTTAGCTGGT	NA	False	NA	23	True	AATAAA	-13	NA	76227736	76230130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
ENSMUSG00000022551.9_3	chr15	+	1785	6	FSM	ENSMUSG00000022551.9	ENSMUST00000229710.2	1791	6	7	-1	7	1	multi-exon	FALSE	canonical	3	4240	junction_4	274.648866737149	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACATTTTAGCTGGTCAA	NA	False	NA	26	True	AATAAA	-16	NA	76227739	76230133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
ENSMUSG00000022552.17_0	chr15	-	1348	9	FSM	ENSMUSG00000022552.17	ENSMUST00000023211.16	1734	9	384	2	-15	-1	multi-exon	FALSE	canonical	3	126	junction_7	14.1862609591111	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTGTGTTCTGTTCTTG	8497	False	NA	-5	True	ATTAAA	-14	NA	76234927	76231241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
ENSMUSG00000022552.17_3	chr15	-	1143	8	NIC	ENSMUSG00000022552.17	novel	1734	9	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	47.1584389833563	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGTTCTGTTCTTGG	8528	False	NA	-4	True	ATTAAA	-15	NA	76234896	76231240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234680
ENSMUSG00000022552.17_9	chr15	-	1789	7	NIC	ENSMUSG00000022552.17	novel	1734	9	NA	NA	27	0	intron_retention	FALSE	canonical	3	126	junction_5	15.2096460620664	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGTTCTGTTCTTGG	8204	False	NA	-4	True	ATTAAA	-15	NA	76235220	76231240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76231386_76231458_76231588_76231681_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
ENSMUSG00000022553.17_0	chr15	+	1666	8	FSM	ENSMUSG00000022553.17	ENSMUST00000023212.15	1686	8	17	3	-4	-2	multi-exon	FALSE	canonical	3	425	junction_1	86.5157765487702	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGATGGAACCTGGGAGTT	NA	False	NA	21	True	AATAAA	-13	NA	76235522	76238570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76235860_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ENSMUSG00000022553.17_1	chr15	+	1621	8	FSM	ENSMUSG00000022553.17	ENSMUST00000160853.8	1651	8	28	2	-5	-1	multi-exon	FALSE	canonical	3	203	junction_1	163.413086179455	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATGGAACCTGGGAGTTT	NA	False	NA	22	True	AATAAA	-14	NA	76235521	76238571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76235860_76236666_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ENSMUSG00000022553.17_2	chr15	+	1723	9	FSM	ENSMUSG00000022553.17	ENSMUST00000161527.8	1743	9	20	0	5	0	multi-exon	FALSE	canonical	3	22	junction_1	277.590075471008	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAACCTGGGAGTTTG	NA	False	NA	23	True	AATAAA	-15	NA	76235513	76238572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76235860_76236195_76236242_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ENSMUSG00000022553.17_8	chr15	+	1670	8	NIC	ENSMUSG00000022553.17	novel	1686	8	NA	NA	4	-4	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	221.621114443879	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGATGGAACCTGGGAG	NA	False	NA	19	True	AATAAA	-11	NA	76235512	76238568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76235860_76236623_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ENSMUSG00000022554.8_0	chr15	+	2303	6	NNC	ENSMUSG00000022554.8	novel	1993	6	NA	NA	22	413	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	42.1454623892063	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACATTCACCGTGTAGAC	3566	False	NA	NA	False	NA	NA	NA	76253119	76256050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_76253741_76253851_76253901_76254055_76254155_76254361_76254454_76254531_76254655_76254731
ENSMUSG00000022554.8_1	chr15	+	1984	6	FSM	ENSMUSG00000022554.8	ENSMUST00000023213.8	1993	6	19	-10	19	10	multi-exon	FALSE	canonical	3	77	junction_1	14.4858551697855	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCAAGAGATTCTCCTGC	3563	False	NA	NA	False	NA	NA	NA	76253116	76255647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76253770_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
ENSMUSG00000022554.8_2	chr15	+	1958	6	NIC	ENSMUSG00000022554.8	novel	1993	6	NA	NA	21	15	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	27.9184526791869	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGATTCTCCTGCGTGTT	3565	False	NA	NA	False	NA	NA	NA	76253118	76255652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76253741_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
ENSMUSG00000022555.13_0	chr15	-	1798	17	FSM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	88	2	-37	0	multi-exon	FALSE	canonical	3	155	junction_16	22.0368122411115	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCAGGGGTTGTGGAG	NA	False	NA	-7	True	AATAAA	-16	NA	76396063	76386216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018_76387085_76387158_76387272_76387353_76387399_76387473_76387516_76387589_76387629_76387717_76387822_76387905_76387981_76388064_76388173_76388314_76388421_76388548_76388602_76388685_76388772_76388865_76388907_76390765_76390854_76395754
ENSMUSG00000022555.13_8	chr15	-	1738	17	NIC	ENSMUSG00000022555.13	novel	1888	17	NA	NA	-53	-6	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	48.5218620185788	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTCTTGCAGGGGTT	NA	False	NA	-13	True	AATAAA	-10	NA	76396079	76386222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018_76387085_76387158_76387202_76387353_76387399_76387473_76387516_76387589_76387629_76387717_76387822_76387905_76387981_76388064_76388173_76388314_76388421_76388548_76388602_76388685_76388772_76388865_76388907_76390765_76390854_76395754
ENSMUSG00000022556.12_15	chr15	+	2018	12	FSM	ENSMUSG00000022556.12	ENSMUST00000072838.6	2018	12	-5	5	5	-1	multi-exon	FALSE	canonical	3	46	junction_10	77.0148638653497	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACATACATACATACATAC	7139	False	NA	7	True	NA	NA	NA	76361639	76385167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384466_76384537_76384616
ENSMUSG00000022556.12_2	chr15	+	2085	13	FSM	ENSMUSG00000022556.12	ENSMUST00000227478.2	2084	13	-6	5	4	-1	multi-exon	FALSE	canonical	3	205	junction_11	40.4687808343941	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACATACATACATACATAC	7138	False	NA	7	True	NA	NA	NA	76361638	76385167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384397_76384466_76384537_76384616
ENSMUSG00000022556.12_4	chr15	+	2169	14	NIC	ENSMUSG00000022556.12	novel	2102	13	NA	NA	4	-1	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	103.530403161092	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACATACATACATACATAC	7138	False	NA	7	True	NA	NA	NA	76361638	76385167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76383331_76383416_76384147_76384254_76384330_76384397_76384466_76384537_76384616
ENSMUSG00000022556.12_6	chr15	+	2159	12	NIC	ENSMUSG00000022556.12	novel	2084	13	NA	NA	4	1	intron_retention	FALSE	canonical	3	226	junction_10	34.6941774713456	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACATACATACATACATAT	7138	False	NA	11	True	NA	NA	NA	76361638	76385171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384537_76384616
ENSMUSG00000022557.12_0	chr15	-	2456	16	FSM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	26	9	26	-9	multi-exon	FALSE	canonical	3	559	junction_11	43.9047453775405	1021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTCTTGACCCTGGCTGG	NA	False	NA	-43	True	AATAAA	-11	NA	76361451	76337197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
ENSMUSG00000022557.12_16	chr15	-	2528	15	NIC	ENSMUSG00000022557.12	novel	2491	16	NA	NA	28	-7	intron_retention	FALSE	canonical	3	559	junction_10	44.3286082592729	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTGACCCTGGCTGGCA	NA	False	NA	-41	True	AATAAA	-13	NA	76361449	76337195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
ENSMUSG00000022558.17_1	chr15	+	5248	44	FSM	ENSMUSG00000022558.17	ENSMUST00000096385.11	5268	44	19	1	0	0	multi-exon	FALSE	canonical	3	62	junction_5	19.8740490552834	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGGTGACATTGTATCAA	NA	False	NA	9	True	AATAAA	-15	NA	76264731	76337237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76264777_76274230_76274328_76276580_76276660_76278002_76278149_76285775_76285908_76286332_76286496_76286682_76286782_76292091_76292244_76292587_76292729_76293082_76293176_76297101_76297181_76298418_76298533_76305339_76305414_76307915_76308036_76311308_76311417_76311711_76311857_76312101_76312143_76312443_76312586_76312848_76312902_76313352_76313461_76313987_76314108_76314376_76314500_76316348_76316496_76316571_76316599_76317473_76317597_76317737_76317818_76318026_76318142_76318262_76318359_76318882_76318988_76319969_76320106_76320204_76320318_76321437_76321591_76327449_76327605_76330715_76330882_76331368_76331566_76334285_76334424_76334838_76334954_76335261_76335409_76335546_76335736_76336004_76336161_76336243_76336379_76336446_76336550_76336627_76336694_76337025
ENSMUSG00000022558.17_27	chr15	+	5203	43	ISM	ENSMUSG00000022558.17	ENSMUST00000096385.11	5268	44	9516	3	-2	0	3prime_fragment	FALSE	canonical	3	62	junction_4	19.7459488080737	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGGGTGACATTGTATC	2	True	NA	7	True	AATAAA	-13	NA	76274228	76337235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76274328_76276580_76276660_76278002_76278149_76285775_76285908_76286332_76286496_76286682_76286782_76292091_76292244_76292587_76292729_76293082_76293176_76297101_76297181_76298418_76298533_76305339_76305414_76307915_76308036_76311308_76311417_76311711_76311857_76312101_76312143_76312443_76312586_76312848_76312902_76313352_76313461_76313987_76314108_76314376_76314500_76316348_76316496_76316571_76316599_76317473_76317597_76317737_76317818_76318026_76318142_76318262_76318359_76318882_76318988_76319969_76320106_76320204_76320318_76321437_76321591_76327449_76327605_76330715_76330882_76331368_76331566_76334285_76334424_76334838_76334954_76335261_76335409_76335546_76335736_76336004_76336161_76336243_76336379_76336446_76336550_76336627_76336694_76337025
ENSMUSG00000022559.9_1	chr15	-	1961	8	FSM	ENSMUSG00000022559.9	ENSMUST00000230513.2	1953	8	-11	3	0	0	multi-exon	FALSE	canonical	3	133	junction_7	19.025224930956	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGATTTATTTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	76422946	76419929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116
ENSMUSG00000022559.9_2	chr15	-	1712	9	FSM	ENSMUSG00000022559.9	ENSMUST00000023219.9	1710	9	-11	9	0	0	multi-exon	FALSE	canonical	3	128	junction_8	22.8988946239769	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGATTTATTTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	76422946	76419929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422524
ENSMUSG00000022559.9_3	chr15	-	2087	7	FSM	ENSMUSG00000022559.9	ENSMUST00000229813.2	2091	7	4	0	4	0	multi-exon	TRUE	canonical	3	158	junction_6	11.5325625946708	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGATTTATTTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	76422942	76419929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922
ENSMUSG00000022560.10_1	chr15	+	2168	3	FSM	ENSMUSG00000022560.10	ENSMUST00000230994.2	2889	3	-21	742	-21	-742	multi-exon	FALSE	canonical	3	120	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGGTTGTTAATCCCATG	NA	False	NA	3	True	AATAAA	-13	NA	76423142	76425588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76423396_76423582_76423803_76423893
ENSMUSG00000022560.10_2	chr15	+	2031	5	FSM	ENSMUSG00000022560.10	ENSMUST00000023220.10	5289	5	38	3220	38	-742	multi-exon	FALSE	canonical	3	110	junction_4	5.2618912949623	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGGTTGTTAATCCCATG	NA	False	NA	3	True	AATAAA	-13	NA	76423069	76425588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76423396_76423582_76423803_76423893_76424780_76424871_76424996_76425113
ENSMUSG00000022560.10_3	chr15	+	2169	4	ISM	ENSMUSG00000022560.10	ENSMUST00000023220.10	5289	5	18	3220	18	-742	intron_retention	FALSE	canonical	3	120	junction_1	1.69967317119759	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGGTTGTTAATCCCATG	NA	False	NA	3	True	AATAAA	-13	NA	76423049	76425588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76423396_76423582_76423803_76423893_76424780_76424871
ENSMUSG00000022561.14_0	chr15	+	2223	11	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	-25	1	intron_retention	FALSE	non_canonical	3	197	junction_5	31.0741049750431	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGGGATCCTGGCCCGC	4801	False	NA	16	True	AATAAA	-19	NA	76215518	76219099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76215664_76216095_76216276_76216359_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
ENSMUSG00000022561.14_1	chr15	+	1996	12	FSM	ENSMUSG00000022561.14	ENSMUST00000023221.13	2107	12	103	8	-10	1	multi-exon	FALSE	non_canonical	3	197	junction_6	31.5777932223483	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGGGATCCTGGCCCGC	4816	False	NA	16	True	AATAAA	-19	NA	76215533	76219099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
ENSMUSG00000022561.14_2	chr15	+	2083	11	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	-20	1	intron_retention	FALSE	non_canonical	3	245	junction_2	20.9035882087263	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGGGATCCTGGCCCGC	4806	False	NA	16	True	AATAAA	-19	NA	76215523	76219099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
ENSMUSG00000022561.14_21	chr15	+	2259	11	ISM	ENSMUSG00000022561.14	ENSMUST00000164972.8	2237	12	159	-1	-10	1	3prime_fragment	FALSE	non_canonical	3	197	junction_5	30.9497980607305	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGGGATCCTGGCCCGC	4985	False	NA	16	True	AATAAA	-19	NA	76215702	76219099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
ENSMUSG00000022561.14_4	chr15	+	2303	10	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	-28	1	intron_retention	TRUE	non_canonical	3	245	junction_2	19.9208309609022	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGGGATCCTGGCCCGC	4798	False	NA	16	True	AATAAA	-19	NA	76215515	76219099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76215664_76216095_76216276_76216359_76216832_76216909_76217012_76217102_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
ENSMUSG00000022561.14_6	chr15	+	2259	10	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	-19	1	intron_retention	FALSE	canonical	3	245	junction_2	21.6800528449085	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGGGATCCTGGCCCGC	4807	False	NA	16	True	AATAAA	-19	NA	76215524	76219099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217574_76217663_76218091_76218213_76218405_76218489_76218661_76218781
ENSMUSG00000022562.16_2	chr15	-	4492	26	ISM	ENSMUSG00000022562.16	ENSMUST00000023222.13	3970	27	5	2	5	-2	intron_retention	FALSE	canonical	2	7	junction_11	7.11550419857933	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTTATTGGGTTATTGG	9188	False	NA	-21	True	AATAAA	-15	NA	76191440	76180804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_76180982_76181120_76181219_76181316_76181478_76181558_76181717_76181818_76181969_76182105_76182241_76182335_76182483_76182586_76182772_76185025_76185201_76185292_76185395_76185486_76185648_76186245_76186398_76186581_76186695_76186830_76186970_76187055_76187194_76187377_76187549_76187635_76187749_76188286_76188553_76188665_76188734_76188833_76188973_76189092_76189259_76189339_76189536_76189647_76189772_76189860_76189961_76190398_76190591_76190674
ENSMUSG00000022562.16_3	chr15	-	3996	27	FSM	ENSMUSG00000022562.16	ENSMUST00000023222.13	3970	27	-27	1	-27	-1	multi-exon	TRUE	canonical	2	7	junction_11	7.05305339056621	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTATTGGGTTATTGGG	9156	False	NA	-20	True	AATAAA	-16	NA	76191472	76180803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76180982_76181120_76181219_76181316_76181478_76181558_76181717_76181818_76181969_76182105_76182241_76182335_76182483_76182586_76182772_76185025_76185201_76185292_76185395_76185486_76185648_76186245_76186398_76186581_76186695_76186830_76186970_76187055_76187194_76187377_76187549_76187635_76187749_76188286_76188553_76188665_76188734_76188833_76188973_76189092_76189259_76189339_76189536_76189647_76189772_76189860_76189961_76190398_76190591_76190674_76190899_76191427
ENSMUSG00000022564.8_0	chr15	+	1715	7	FSM	ENSMUSG00000022564.8	ENSMUST00000023225.8	1725	7	11	-1	11	1	multi-exon	FALSE	canonical	3	70	junction_1	10.0567832276971	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGCTTCTCCTTGTCTC	NA	False	NA	14	True	AATAAA	-15	NA	76130985	76134105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76131101_76132050_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
ENSMUSG00000022564.8_2	chr15	+	1922	7	NIC	ENSMUSG00000022564.8	novel	1725	7	NA	NA	15	1	intron_retention	FALSE	canonical	3	13	junction_1	29.8533452434099	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGCTTCTCCTTGTCTC	NA	False	NA	14	True	AATAAA	-15	NA	76130989	76134105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76131101_76131839_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
ENSMUSG00000022564.8_7	chr15	+	1642	6	ISM	ENSMUSG00000022564.8	ENSMUST00000023225.8	1725	7	1034	-1	-255	1	3prime_fragment	FALSE	canonical	3	82	junction_5	6.71118469422501	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGCTTCTCCTTGTCTC	NA	False	NA	14	True	AATAAA	-15	NA	76132008	76134105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
ENSMUSG00000022565.16_1	chr15	-	4011	1	ISM	ENSMUSG00000022565.16	ENSMUST00000054449.14	15018	33	24850	1	13058	0	mono-exon	FALSE	NA	NA	NA	NA	NA	224	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGGGTCTTGCCTTGTGC	NA	False	NA	-8	True	AATAAA	-17	NA	76059185	76055174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_76055200_76059200
ENSMUSG00000022565.16_3	chr15	-	9190	2	ISM	ENSMUSG00000022565.16	ENSMUST00000023226.13	15001	32	15411	1	7744	-1	3prime_fragment	FALSE	canonical	3	60	junction_1	0	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACCTGGGTCTTGCCTTGT	7067	False	NA	-10	True	AATAAA	-15	NA	76064499	76055176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_76062586_76062718
ENSMUSG00000022568.18_15	chr15	-	5496	37	NIC	ENSMUSG00000022568.18	novel	5599	38	NA	NA	22	-6	combination_of_known_junctions	FALSE	canonical	3	96	junction_9	77.9983529028374	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTCTCTTGTCCTTTTGT	NA	False	NA	-7	True	AATAAA	-15	NA	75941581	75919012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921305_75921390_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
ENSMUSG00000022568.18_4	chr15	-	5413	36	FSM	ENSMUSG00000022568.18	ENSMUST00000063747.12	5440	36	21	6	21	-6	multi-exon	FALSE	canonical	3	271	junction_30	52.1302607094253	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTCTCTTGTCCTTTTGT	NA	False	NA	-7	True	AATAAA	-15	NA	75941582	75919012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
ENSMUSG00000022570.8_0	chr15	-	1324	11	FSM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	8	3	-1	-3	multi-exon	FALSE	canonical	3	182	junction_10	87.2147349935778	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCTGGACTCAGAAGCT	8927	False	NA	-32	True	AATAAA	-12	NA	75801594	75796534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
ENSMUSG00000022570.8_1	chr15	-	1270	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229641.2	1355	11	75	10	-4	-3	multi-exon	FALSE	canonical	3	225	junction_10	74.8304750753328	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCTGGACTCAGAAGCT	8915	False	NA	-32	True	AATAAA	-12	NA	75801606	75796534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
ENSMUSG00000022571.10_0	chr15	-	1273	6	FSM	ENSMUSG00000022571.10	ENSMUST00000053918.9	1339	6	67	-1	67	1	multi-exon	FALSE	canonical	3	236	junction_1	15.2525407719501	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGGACTTTAGTAGAGT	NA	False	NA	-12	True	NA	NA	NA	75793342	75788324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75788929_75789085_75789179_75790100_75790314_75790521_75790702_75791077_75791143_75793224
ENSMUSG00000022574.8_2	chr15	-	1714	13	FSM	ENSMUSG00000022574.8	ENSMUST00000023237.8	1898	13	173	11	-18	0	multi-exon	FALSE	canonical	3	20	junction_8	7.1351049201972	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTTGTCAGCCATGTGT	NA	False	NA	NA	False	CATAAA	-19	NA	75766157	75762815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75762910_75762997_75763106_75763195_75763351_75763428_75763532_75763632_75763714_75763811_75763897_75764190_75764332_75764405_75764603_75764953_75765070_75765154_75765286_75765401_75765485_75765568_75765697_75765865
ENSMUSG00000022575.6_0	chr15	+	1654	10	NIC	ENSMUSG00000022575.6	novel	1792	11	NA	NA	-59	-4	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	13.1740485635797	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGCTGTGTTGAGGGGT	NA	False	NA	11	True	AATAAA	-16	NA	75734116	75739253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_75734331_75735253_75735478_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
ENSMUSG00000022575.6_10	chr15	+	1875	8	NIC	ENSMUSG00000022575.6	novel	1792	11	NA	NA	-405	4	intron_retention	FALSE	canonical	3	41	junction_1	5.49582401762038	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAATGCTGTGTTGAGGGG	NA	False	NA	10	True	AATAAA	-15	NA	75736137	75739252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
ENSMUSG00000022575.6_2	chr15	+	2450	10	NIC	ENSMUSG00000022575.6	novel	1792	11	NA	NA	-52	0	intron_retention	FALSE	canonical	3	31	junction_2	6.87992248018343	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCATAATGCTGTGTTGA	NA	False	NA	6	True	AATAAA	-11	NA	75734123	75739248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_75734331_75735253_75736286_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
ENSMUSG00000022575.6_3	chr15	+	1793	11	FSM	ENSMUSG00000022575.6	ENSMUST00000023238.6	1792	11	-12	11	-12	-2	multi-exon	FALSE	canonical	3	30	junction_2	7.7614431647729	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGCATAATGCTGTGTT	NA	False	NA	4	True	AATAAA	-9	NA	75734163	75739246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_75734331_75735253_75735478_75736092_75736286_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
ENSMUSG00000022575.6_6	chr15	+	2897	9	NIC	ENSMUSG00000022575.6	novel	1792	11	NA	NA	1	0	intron_retention	FALSE	canonical	3	41	junction_1	5.42995165724337	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCATAATGCTGTGTTGA	NA	False	NA	6	True	AATAAA	-11	NA	75734188	75739248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_75734331_75735253_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
ENSMUSG00000022580.14_0	chr15	+	2283	15	FSM	ENSMUSG00000022580.14	ENSMUST00000121137.9	3360	15	-4	1081	-4	-1	multi-exon	FALSE	canonical	1	1	junction_2	2.36578502309703	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGGTGAGTCTGAGTCGG	NA	False	NA	NA	False	ATTAAA	-13	NA	75576124	75586253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_75576324_75580019_75580136_75580837_75580967_75581085_75581162_75581862_75581941_75582303_75582429_75582514_75582682_75582836_75583031_75583402_75583560_75583639_75583748_75584105_75584301_75584850_75584928_75585067_75585215_75585298_75585461_75585900
ENSMUSG00000022587.15_0	chr15	+	1129	4	FSM	ENSMUSG00000022587.15	ENSMUST00000190810.7	924	4	471	-676	-4	0	multi-exon	FALSE	canonical	3	397	junction_1	104.416899441081	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8383	False	NA	27	True	AATAAA	-15	NA	74827497	74831180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_74827567_74829625_74829727_74830117_74830238_74830341
ENSMUSG00000022587.15_1	chr15	+	1126	4	FSM	ENSMUSG00000022587.15	ENSMUST00000191436.7	1122	4	-4	0	-4	0	multi-exon	FALSE	canonical	3	296	junction_1	144.768781165001	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8383	False	NA	27	True	AATAAA	-15	NA	74827497	74831180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_74827567_74829628_74829727_74830117_74830238_74830341
ENSMUSG00000022587.15_3	chr15	+	1237	3	ISM	ENSMUSG00000022587.15	ENSMUST00000191127.7	575	5	385	-671	-8	0	intron_retention	FALSE	canonical	3	397	junction_1	126.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8379	False	NA	27	True	AATAAA	-15	NA	74827493	74831180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_74827567_74829625_74829727_74830117
ENSMUSG00000022594.15_0	chr15	-	3982	4	FSM	ENSMUSG00000022594.15	ENSMUST00000023259.15	4023	4	30	11	-2	-11	multi-exon	FALSE	canonical	2	4	junction_2	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGACATGTGGCTCTCTTT	9970	False	NA	-15	True	AATAAA	-7	NA	74624865	74619711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_74623277_74623391_74623494_74623703_74623887_74624733
ENSMUSG00000022601.12_0	chr16	+	4968	11	FSM	ENSMUSG00000022601.12	ENSMUST00000050248.9	4920	11	-57	9	-57	-9	multi-exon	FALSE	canonical	3	98	junction_1	21.3485362495886	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAAAGCTTTGGCGTT	NA	False	NA	-3	True	AATAAA	-18	NA	55794188	55829267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_55794735_55800957_55801194_55802537_55802770_55810621_55811458_55811804_55811982_55818368_55818615_55820941_55821087_55823071_55823190_55826272_55826432_55826537_55826714_55827170
ENSMUSG00000022601.12_21	chr16	+	3694	8	ISM	ENSMUSG00000022601.12	ENSMUST00000050248.9	4920	11	16636	9	1553	-9	3prime_fragment	FALSE	canonical	3	106	junction_1	17.3452340098698	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAAAGCTTTGGCGTT	NA	False	NA	-3	True	AATAAA	-18	NA	55810881	55829267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_55811458_55811804_55811982_55818368_55818615_55820941_55821087_55823071_55823190_55826272_55826432_55826537_55826714_55827170
ENSMUSG00000022601.12_29	chr16	+	1507	1	ISM	ENSMUSG00000022601.12	ENSMUST00000050248.9	4920	11	33515	9	2206	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAAAGCTTTGGCGTT	7361	False	NA	-3	True	AATAAA	-18	NA	55827760	55829267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_55827800_55829300
ENSMUSG00000022602.15_0	chr15	-	3049	3	FSM	ENSMUSG00000022602.15	ENSMUST00000023268.14	3055	3	-1	7	-1	-7	multi-exon	FALSE	canonical	3	30	junction_2	11.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTATTGGAGTATGTGC	NA	False	NA	-7	True	AATAAA	-7	NA	74544418	74540938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_74541843_74542028_74542169_74542413
ENSMUSG00000022602.15_1	chr15	-	3046	3	FSM	ENSMUSG00000022602.15	ENSMUST00000110009.4	3054	3	1	7	-1	-7	multi-exon	FALSE	canonical	3	15	junction_2	19	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTATTGGAGTATGTGC	NA	False	NA	-7	True	AATAAA	-7	NA	74544418	74540938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_74541843_74542028_74542166_74542413
ENSMUSG00000022604.19_0	chr16	-	2831	11	FSM	ENSMUSG00000022604.19	ENSMUST00000023270.14	7911	11	29	5051	7	12	multi-exon	FALSE	canonical	3	23	junction_5	7.29383301152419	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATGTTTCCTTTACATC	NA	False	NA	NA	False	ATTAAA	-35	NA	55755189	55725301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_55726233_55731917_55731994_55735219_55735995_55738900_55739026_55739765_55739931_55742433_55742601_55743289_55743404_55745331_55745434_55748083_55748243_55750828_55750972_55755115
ENSMUSG00000022604.19_1	chr16	-	3304	1	ISM	ENSMUSG00000022604.19	ENSMUST00000023270.14	7911	11	30441	1223	29819	-1223	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTATACTATCTCTCT	NA	False	NA	NA	False	CATAAA	-24	NA	55724777	55721473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_55721500_55724800
ENSMUSG00000022604.19_16	chr16	-	2838	8	ISM	ENSMUSG00000022604.19	ENSMUST00000023270.14	7911	11	45	16845	-13	7628	5prime_fragment	FALSE	canonical	3	23	junction_2	7.38172039015075	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTAAAAAAAAAATGAGTG	NA	False	NA	NA	False	NA	NA	NA	55755173	55737095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_55739026_55739765_55739931_55742433_55742601_55743289_55743404_55745331_55745434_55748083_55748243_55750828_55750972_55755115
ENSMUSG00000022604.19_3	chr16	-	5497	11	NNC	ENSMUSG00000022604.19	novel	7911	11	NA	NA	5	-2406	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_8	12.1753850041795	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55755191	55722656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_55726233_55731917_55731994_55735219_55735995_55738900_55739026_55739765_55739931_55742433_55742601_55743289_55743404_55745331_55745434_55748064_55748243_55750828_55750972_55755115
ENSMUSG00000022604.19_4	chr16	-	5033	9	ISM	ENSMUSG00000022604.19	ENSMUST00000117468.8	2887	11	6465	-2569	6465	-2521	3prime_fragment	FALSE	canonical	3	23	junction_5	6.23999198717434	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACAGGCAGATCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	55748131	55722771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_55726233_55731917_55731994_55735219_55735995_55738900_55739026_55739765_55739931_55742433_55742601_55743289_55743404_55745331_55745434_55748083
ENSMUSG00000022604.19_7	chr16	-	2437	6	ISM	ENSMUSG00000022604.19	ENSMUST00000023270.14	7911	11	22	20512	0	3961	5prime_fragment	FALSE	canonical	3	32	junction_2	5.5281099844341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCCCAATACTCAACAGT	NA	False	NA	NA	False	AATAAA	-16	NA	55755196	55740762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_55742601_55743289_55743404_55745331_55745434_55748083_55748243_55750828_55750972_55755115
ENSMUSG00000022604.19_8	chr16	-	615	5	FSM	ENSMUSG00000022604.19	ENSMUST00000121703.3	609	5	-10	4	-10	-4	multi-exon	FALSE	canonical	3	9	junction_1	14.2653426176871	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCATAGTATCGAGTTT	NA	False	NA	NA	False	NA	NA	NA	55755206	55744922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_55745043_55745331_55745434_55748083_55748243_55750828_55750972_55755115
ENSMUSG00000022604.19_9	chr16	-	5591	3	ISM	ENSMUSG00000022604.19	ENSMUST00000023270.14	7911	11	19250	1216	18628	-1216	3prime_fragment	FALSE	canonical	3	35	junction_1	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTATCTCTCTTGGTAAT	NA	False	NA	NA	False	CATAAA	-31	NA	55735968	55721466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_55726233_55731917_55731994_55735219
ENSMUSG00000022607.19_12	chr15	-	4309	33	NIC	ENSMUSG00000022607.19	novel	4417	32	NA	NA	30	-233	combination_of_known_junctions	FALSE	canonical	3	34	junction_31	46.9187191954075	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCCACTGGAGCTAACTG	1707	False	NA	-12	True	ATTAAA	-16	NA	73295010	73077183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73236889_73237045_73266496_73266594_73294857
ENSMUSG00000022607.19_2	chr15	-	4057	31	NIC	ENSMUSG00000022607.19	novel	4417	32	NA	NA	30	-233	combination_of_known_junctions	FALSE	canonical	1	6	junction_30	42.3057784337895	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCCACTGGAGCTAACTG	1707	False	NA	-12	True	ATTAAA	-16	NA	73295010	73077183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73294857
ENSMUSG00000022607.19_4	chr15	-	4178	33	NIC	ENSMUSG00000022607.19	novel	4540	35	NA	NA	29	-231	combination_of_known_junctions	FALSE	canonical	3	18	junction_17	54.0647398379942	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACTGGAGCTAACTGAC	1706	False	NA	-10	True	ATTAAA	-18	NA	73295011	73077181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73147469_73147491_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73266496_73266594_73294857
ENSMUSG00000022607.19_5	chr15	-	4159	32	NNC	ENSMUSG00000022607.19	novel	4417	32	NA	NA	29	-233	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	46.9541587944639	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCCACTGGAGCTAACTG	1706	False	NA	-12	True	ATTAAA	-16	NA	73295011	73077183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087823_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73266496_73266594_73294857
ENSMUSG00000022607.19_6	chr15	-	4147	32	FSM	ENSMUSG00000022607.19	ENSMUST00000110036.11	4417	32	37	233	-26	-233	multi-exon	FALSE	canonical	3	91	junction_30	29.7827373894676	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCCACTGGAGCTAACTG	1714	False	NA	-12	True	ATTAAA	-16	NA	73295003	73077183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73266496_73266594_73294857
ENSMUSG00000022610.11_0	chr15	-	1841	12	FSM	ENSMUSG00000022610.11	ENSMUST00000088827.8	1808	12	-35	2	-4	-1	multi-exon	FALSE	canonical	2	7	junction_5	1.87634249459548	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTGGTTGTGTGGCCCC	NA	False	NA	NA	False	AATAAA	-18	NA	89024859	89014788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89015422_89016697_89016872_89016955_89017035_89017103_89017184_89017281_89017354_89018814_89018930_89019325_89019374_89019629_89019660_89019779_89019892_89021603_89021663_89024330_89024461_89024550
ENSMUSG00000022610.11_1	chr15	-	1958	11	NIC	ENSMUSG00000022610.11	novel	1808	12	NA	NA	-2	-2	intron_retention	FALSE	canonical	2	7	junction_4	1.96214168703486	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTCTGGTTGTGTGGCCC	NA	False	NA	NA	False	AATAAA	-17	NA	89024908	89014789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89015422_89016697_89016872_89016955_89017184_89017281_89017354_89018814_89018930_89019325_89019374_89019629_89019660_89019779_89019892_89021603_89021663_89024330_89024461_89024550
ENSMUSG00000022610.11_2	chr15	-	1930	11	FSM	ENSMUSG00000022610.11	ENSMUST00000230266.2	1928	11	-2	0	-2	0	multi-exon	FALSE	canonical	2	7	junction_5	1.79164728671689	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGTTGTGTGGCCCCA	NA	False	NA	NA	False	AATAAA	-19	NA	89024857	89014787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89015422_89016697_89016872_89016955_89017035_89017103_89017184_89017281_89017354_89018814_89018930_89019325_89019374_89019629_89019660_89019779_89019892_89021603_89021663_89024330
ENSMUSG00000022614.9_0	chr15	-	3023	11	ISM	ENSMUSG00000022614.9	ENSMUST00000231067.2	3262	13	471	5	6	-1	intron_retention	FALSE	canonical	3	177	junction_4	26.2442374627269	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATTTACTAGTGGTTTT	NA	False	NA	-8	True	AATAAA	-16	NA	89239344	89235346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285
ENSMUSG00000022614.9_1	chr15	-	2721	14	FSM	ENSMUSG00000022614.9	ENSMUST00000023283.6	2906	14	44	141	0	-2	multi-exon	FALSE	canonical	0	0	junction_12	66.7675469479281	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCATTTACTAGTGGTTT	NA	False	NA	-9	True	AATAAA	-15	NA	89239818	89235347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558
ENSMUSG00000022614.9_18	chr15	-	3219	13	FSM	ENSMUSG00000022614.9	ENSMUST00000231067.2	3262	13	38	5	0	-1	multi-exon	FALSE	canonical	0	0	junction_12	69.3126471544375	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATTTACTAGTGGTTTT	NA	False	NA	-8	True	AATAAA	-16	NA	89239777	89235346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766
ENSMUSG00000022614.9_2	chr15	-	2567	15	NIC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	0	1	combination_of_known_junctions	TRUE	canonical	0	0	junction_12	79.1957340120936	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTACTAGTGGTTTTTC	NA	False	NA	-6	True	AATAAA	-18	NA	89239836	89235344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558_89239614_89239788
ENSMUSG00000022614.9_22	chr15	-	3383	12	ISM	ENSMUSG00000022614.9	ENSMUST00000231067.2	3262	13	-18	5	3	-1	intron_retention	FALSE	canonical	3	165	junction_11	31.5424415642593	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATTTACTAGTGGTTTT	NA	False	NA	-8	True	AATAAA	-16	NA	89239833	89235346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629
ENSMUSG00000022615.8_0	chr15	-	1332	4	ISM	ENSMUSG00000022615.8	ENSMUST00000023285.5	2037	11	2928	-296	2928	296	3prime_fragment	FALSE	canonical	3	35	junction_3	10.6770782520313	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCATGTGCTCTGTACCA	NA	False	NA	-5	True	ATTAAA	-16	NA	89258314	89255837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89256669_89257625_89257806_89257885_89258027_89258134
ENSMUSG00000022615.8_1	chr15	-	1203	3	FSM	ENSMUSG00000091780.4	ENSMUST00000167643.4	1145	3	-54	-4	-26	4	multi-exon	FALSE	canonical	3	56	junction_2	1.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTGCTCTGTACCAGC	NA	False	NA	-3	True	ATTAAA	-18	NA	89258075	89255835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89256669_89257625_89257806_89257885
ENSMUSG00000022615.8_4	chr15	-	910	2	FSM	ENSMUSG00000091780.4	ENSMUST00000228977.2	1250	2	348	-8	320	5	multi-exon	FALSE	canonical	3	59	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGCTCTGTACCAGCA	NA	False	NA	-2	True	ATTAAA	-19	NA	89257701	89255834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89256669_89257625
ENSMUSG00000022617.16_0	chr15	-	1355	9	FSM	ENSMUSG00000022617.16	ENSMUST00000170334.8	2063	9	701	7	-66	0	multi-exon	FALSE	canonical	3	290	junction_3	35.8355619462009	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1920	False	NA	NA	False	AATAAA	-23	NA	89313362	89310569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251
ENSMUSG00000022617.16_1	chr15	-	1240	11	NNC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_8	106.87300875338	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1661	False	NA	NA	False	AATAAA	-23	NA	89313621	89310569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312762_89312916_89313031_89313251_89313361_89313579
ENSMUSG00000022617.16_10	chr15	-	1374	10	NIC	ENSMUSG00000022617.16	novel	1416	10	NA	NA	5	0	intron_retention	FALSE	canonical	3	62	junction_3	105.224627451097	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1654	False	NA	NA	False	AATAAA	-23	NA	89313628	89310569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89310865_89311013_89311096_89311526_89311603_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
ENSMUSG00000022617.16_19	chr15	-	132	1	NIC	ENSMUSG00000116461.2	novel	4296	27	NA	NA	3197	-9963	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAACAAATACAGACTTAAG	4580	False	NA	NA	False	AATAAA	-22	NA	89310702	89310570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89310600_89310700
ENSMUSG00000022617.16_2	chr15	-	1237	11	FSM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	470	0	1	0	multi-exon	FALSE	canonical	3	146	junction_8	79.2225346729073	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1650	False	NA	NA	False	AATAAA	-23	NA	89313632	89310569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
ENSMUSG00000022617.16_4	chr15	-	1186	10	ISM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	740	0	-66	0	3prime_fragment	FALSE	canonical	3	146	junction_8	78.7223594447169	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1920	False	NA	NA	False	AATAAA	-23	NA	89313362	89310569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251
ENSMUSG00000022617.16_6	chr15	-	1400	10	FSM	ENSMUSG00000022617.16	ENSMUST00000171140.8	1416	10	16	0	7	0	multi-exon	FALSE	canonical	3	259	junction_9	49.0736408087093	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1656	False	NA	NA	False	AATAAA	-23	NA	89313626	89310569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
ENSMUSG00000022617.16_9	chr15	-	1264	11	NIC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_8	112.30422966211	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1657	False	NA	NA	False	AATAAA	-23	NA	89313625	89310569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312782_89312916_89313031_89313251_89313361_89313579
ENSMUSG00000022619.6_0	chr15	+	3243	12	FSM	ENSMUSG00000022619.6	ENSMUST00000023291.6	5558	12	293	2022	293	-2022	multi-exon	FALSE	canonical	3	60	junction_1	12.5005784990103	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGGCTGTTTTTAAGGT	1551	False	NA	15	True	AATAAA	-15	NA	89338408	89346649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_89338489_89339386_89339493_89340727_89341007_89341122_89341220_89341337_89342574_89342944_89343021_89343118_89343292_89343384_89343495_89344578_89344687_89344854_89344926_89345562_89345662_89345841
ENSMUSG00000022619.6_13	chr15	+	3318	11	ISM	ENSMUSG00000022619.6	ENSMUST00000023291.6	5558	12	1116	2022	-13	-2022	3prime_fragment	FALSE	canonical	3	72	junction_10	9.60416576283438	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGGCTGTTTTTAAGGT	2374	False	NA	15	True	AATAAA	-15	NA	89339231	89346649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_89339493_89340727_89341007_89341122_89341220_89341337_89342574_89342944_89343021_89343118_89343292_89343384_89343495_89344578_89344687_89344854_89344926_89345562_89345662_89345841
ENSMUSG00000022619.6_15	chr15	+	2939	10	ISM	ENSMUSG00000022619.6	ENSMUST00000023291.6	5558	12	2729	2023	1600	-2023	3prime_fragment	FALSE	canonical	3	72	junction_9	9.68389269755597	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCTGGCTGTTTTTAAGG	3987	False	NA	14	True	AATAAA	-14	NA	89340844	89346648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_89341007_89341122_89341220_89341337_89342574_89342944_89343021_89343118_89343292_89343384_89343495_89344578_89344687_89344854_89344926_89345562_89345662_89345841
ENSMUSG00000022619.6_16	chr15	+	2456	8	ISM	ENSMUSG00000022619.6	ENSMUST00000023291.6	5558	12	3447	2022	2318	-2022	3prime_fragment	FALSE	canonical	3	72	junction_7	10.8326792057879	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGGCTGTTTTTAAGGT	4705	False	NA	15	True	AATAAA	-15	NA	89341562	89346649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_89342574_89342944_89343021_89343118_89343292_89343384_89343495_89344578_89344687_89344854_89344926_89345562_89345662_89345841
ENSMUSG00000022619.6_21	chr15	+	2606	1	ISM	ENSMUSG00000022619.6	ENSMUST00000023291.6	5558	12	7946	4	6817	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGTGTGTTGCTTATCT	9204	False	NA	7	True	AATAAA	-14	NA	89346061	89348667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_89346100_89348700
ENSMUSG00000022620.15_0	chr15	-	2666	8	ISM	ENSMUSG00000022620.15	ENSMUST00000165199.8	3492	9	1270	50	-42	2	3prime_fragment	FALSE	canonical	3	62	junction_5	9.89743318610787	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	89360358	89356728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742_89358913_89358989_89359209_89359324_89359566_89359710
ENSMUSG00000022620.15_1	chr15	-	1537	5	ISM	ENSMUSG00000022620.15	ENSMUST00000023292.9	2699	7	1453	-30	-389	-22	3prime_fragment	FALSE	canonical	3	68	junction_4	5.91607978309962	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGTTGTCTACAAA	NA	False	NA	NA	False	NA	NA	NA	89358863	89356700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742
ENSMUSG00000022620.15_10	chr15	-	2887	6	ISM	ENSMUSG00000022620.15	ENSMUST00000023292.9	2699	7	-32	-11	-32	11	intron_retention	FALSE	canonical	3	68	junction_4	8	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAATAAAAATAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	89360348	89356719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742_89359209_89359324
ENSMUSG00000022620.15_14	chr15	-	2777	7	NIC	ENSMUSG00000022620.15	novel	3492	9	NA	NA	-42	2	intron_retention	FALSE	canonical	3	62	junction_4	10.6301458127346	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	89360358	89356728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89357975_89358209_89358338_89358430_89358556_89358742_89358913_89358989_89359209_89359324_89359566_89359710
ENSMUSG00000022620.15_20	chr15	-	3437	9	FSM	ENSMUSG00000022620.15	ENSMUST00000165199.8	3492	9	22	33	8	19	multi-exon	FALSE	canonical	3	8	junction_8	23.5358768691545	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAAATAAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	89361606	89356711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742_89358913_89358989_89359209_89359324_89359566_89359710_89360859_89361352
ENSMUSG00000022620.15_3	chr15	-	3538	8	NIC	ENSMUSG00000022620.15	novel	3492	9	NA	NA	24	25	intron_retention	FALSE	canonical	3	8	junction_7	24.7831410768016	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAATAAAGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	89361590	89356705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89357975_89358209_89358338_89358430_89358556_89358742_89358913_89358989_89359209_89359324_89359566_89359710_89360859_89361352
ENSMUSG00000022621.17_0	chr15	-	1597	9	FSM	ENSMUSG00000022621.17	ENSMUST00000023294.15	1640	9	40	3	3	1	multi-exon	FALSE	canonical	3	40	junction_3	5.95818764390649	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACTAAGGGTCTCAGTT	1358	False	NA	-7	True	AATAAA	-14	NA	89476086	89466738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89467634_89467801_89467886_89468112_89468211_89468481_89468594_89470461_89470542_89471116_89471197_89472390_89472421_89474475_89474630_89476022
ENSMUSG00000022621.17_12	chr15	-	1354	6	ISM	ENSMUSG00000022621.17	ENSMUST00000023294.15	1640	9	4930	-2	-2451	2	3prime_fragment	FALSE	canonical	3	40	junction_3	4.63033476111609	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGGGTCTCAGTTACCTT	6248	False	NA	-2	True	AATAAA	-19	NA	89471196	89466733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89467634_89467801_89467886_89468112_89468211_89468481_89468594_89470461_89470542_89471116
ENSMUSG00000022621.17_7	chr15	-	269	1	Genic_Genomic	ENSMUSG00000022621.17	novel	NA	NA	NA	NA	1517	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAGGGTCTCAGTTACCT	9502	False	NA	-3	True	AATAAA	-18	NA	89467003	89466734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_89466700_89467000
ENSMUSG00000022623.18_1	chr15	+	3614	2	ISM	ENSMUSG00000022623.18	ENSMUST00000229559.2	4161	11	25024	-1927	1159	-9	3prime_fragment	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAATGAAATCATGTCTC	2926	False	NA	NA	False	NA	NA	NA	89432987	89444453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_89434086_89441937
ENSMUSG00000022623.18_2	chr15	+	3087	1	NIC	ENSMUSG00000022623.18	novel	7365	22	NA	NA	462	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAATGAAATCATGTCTC	NA	False	NA	NA	False	NA	NA	NA	89441366	89444453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_89441400_89444500
ENSMUSG00000022623.18_3	chr15	+	2586	2	NNC	ENSMUSG00000022623.18	novel	7365	22	NA	NA	262	-5	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	0	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAATCATGTCTCAGTT	NA	False	NA	NA	False	NA	NA	NA	89441166	89444457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_89441233_89441937
ENSMUSG00000022629.18_0	chr15	-	6099	33	NIC	ENSMUSG00000022629.18	novel	6439	37	NA	NA	-2	-1	combination_of_known_splicesites	FALSE	canonical	2	8	junction_4	3.77478786655621	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATACTAGTCTTTTTCT	9586	False	NA	NA	False	AATAAA	-21	NA	90934043	90817482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_90818747_90819837_90820038_90821363_90821535_90823187_90823306_90824633_90824799_90826316_90826498_90827967_90828105_90836913_90837022_90840497_90840713_90843279_90843335_90843890_90843952_90849669_90849836_90850539_90850642_90851398_90851594_90852263_90852418_90852559_90852775_90852965_90853035_90853980_90854089_90854881_90855082_90855285_90855475_90855867_90855992_90856827_90856919_90864997_90865202_90868936_90869001_90869444_90869635_90869987_90870184_90875912_90876029_90877903_90878072_90878543_90878679_90879686_90879837_90881745_90881929_90882035_90882259_90933861
ENSMUSG00000022629.18_18	chr15	-	7032	25	ISM	ENSMUSG00000022629.18	ENSMUST00000109288.9	6142	33	119	19731	9	-10762	5prime_fragment	FALSE	canonical	2	8	junction_12	3.93678344449995	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCATGTATTATTTTCC	9597	False	NA	NA	False	AATAAA	-6	NA	90934032	90837209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_90840713_90843279_90843335_90843890_90843952_90849669_90849836_90850539_90850642_90851398_90851594_90852263_90852418_90852559_90852775_90852965_90853035_90853980_90854089_90854881_90855082_90855285_90855475_90855867_90855992_90856827_90856919_90864997_90865202_90868936_90869001_90869444_90869635_90869987_90870184_90875912_90876029_90877903_90878072_90878543_90878679_90879686_90879837_90881745_90881929_90882035_90882259_90933861
ENSMUSG00000022629.18_2	chr15	-	6228	34	NIC	ENSMUSG00000022629.18	novel	6333	37	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_7	4.67826186397814	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATACTAGTCTTTTTCTA	9587	False	NA	NA	False	AATAAA	-22	NA	90934042	90817481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_90818747_90819837_90820038_90821363_90821535_90823187_90823306_90824633_90824799_90826316_90826498_90827967_90828105_90835448_90835578_90836913_90837022_90840497_90840713_90843279_90843335_90843890_90843952_90849669_90849836_90850539_90850642_90851398_90851594_90852263_90852418_90852559_90852775_90852965_90853035_90853980_90854089_90854881_90855082_90855285_90855475_90855867_90855992_90856827_90856919_90864997_90865202_90868936_90869001_90869444_90869635_90869987_90870184_90875912_90876029_90877903_90878072_90878543_90878679_90879686_90879837_90881745_90881929_90882035_90882259_90933861
ENSMUSG00000022629.18_20	chr15	-	3219	15	NIC	ENSMUSG00000022629.18	novel	6439	37	NA	NA	-1735	0	combination_of_known_splicesites	TRUE	canonical	2	8	junction_4	3.26155715909454	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTAGTCTTTTTCTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	90852340	90817478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_90818747_90819837_90820038_90821363_90821535_90823187_90823306_90824633_90824799_90826316_90826498_90827967_90828105_90836913_90837022_90840497_90840713_90843279_90843335_90843890_90843952_90849669_90849836_90850539_90850642_90851398_90851594_90852263
ENSMUSG00000022629.18_3	chr15	-	6121	34	NIC	ENSMUSG00000022629.18	novel	6333	37	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_11	4.40385506050544	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATACTAGTCTTTTTCTA	9586	False	NA	NA	False	AATAAA	-22	NA	90934043	90817481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_90818747_90819837_90820038_90821363_90821535_90823187_90823306_90824633_90824799_90826316_90826498_90827967_90828105_90836913_90837022_90840497_90840713_90843279_90843335_90843890_90843952_90849177_90849199_90849669_90849836_90850539_90850642_90851398_90851594_90852263_90852418_90852559_90852775_90852965_90853035_90853980_90854089_90854881_90855082_90855285_90855475_90855867_90855992_90856827_90856919_90864997_90865202_90868936_90869001_90869444_90869635_90869987_90870184_90875912_90876029_90877903_90878072_90878543_90878679_90879686_90879837_90881745_90881929_90882035_90882259_90933861
ENSMUSG00000022629.18_6	chr15	-	3336	16	NIC	ENSMUSG00000022629.18	novel	6333	37	NA	NA	-1997	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_4	3.18747549010185	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATACTAGTCTTTTTCTA	NA	False	NA	NA	False	AATAAA	-22	NA	90852602	90817481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_90818747_90819837_90820038_90821363_90821535_90823187_90823306_90824633_90824799_90826316_90826498_90827967_90828105_90836913_90837022_90840497_90840713_90843279_90843335_90843890_90843952_90849669_90849836_90850539_90850642_90851398_90851594_90852263_90852418_90852559
ENSMUSG00000022634.10_0	chr15	-	1851	5	FSM	ENSMUSG00000022634.10	ENSMUST00000133736.2	1870	5	15	4	15	-4	multi-exon	TRUE	canonical	3	44	junction_2	48.2875501552937	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTACAGTTTTGCATTTTG	NA	False	NA	-8	True	AATAAA	-13	NA	93234801	93182165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_93183504_93184290_93184444_93215419_93215490_93234220_93234347_93234637
ENSMUSG00000022634.10_1	chr15	-	1779	4	FSM	ENSMUSG00000022634.10	ENSMUST00000080299.7	1676	4	-110	7	17	-4	multi-exon	FALSE	canonical	3	129	junction_3	11.0453610171873	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTACAGTTTTGCATTTTG	NA	False	NA	-8	True	AATAAA	-13	NA	93234799	93182165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_93183504_93184290_93184444_93234220_93234347_93234637
ENSMUSG00000022634.10_6	chr15	-	1640	3	ISM	ENSMUSG00000022634.10	ENSMUST00000080299.7	1676	4	317	10	317	-7	3prime_fragment	FALSE	canonical	3	141	junction_2	7.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTTACAGTTTTGCATT	NA	False	NA	-11	True	AATAAA	-10	NA	93234372	93182168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_93183504_93184290_93184444_93234220
ENSMUSG00000022635.10_0	chr15	-	843	8	FSM	ENSMUSG00000022635.10	ENSMUST00000076070.9	877	8	27	7	-6	0	multi-exon	FALSE	canonical	3	583	junction_1	44.8289265214016	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296188	93283993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
ENSMUSG00000022635.10_10	chr15	-	839	8	FSM	ENSMUSG00000022635.10	ENSMUST00000162160.8	850	8	-5	16	-5	0	multi-exon	FALSE	canonical	3	32	junction_1	229.028917165408	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296187	93283993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_93284165_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
ENSMUSG00000022635.10_9	chr15	-	901	9	NIC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-5	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	285.365965691426	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCAGTTGTGGAATAGTG	NA	False	NA	-13	True	AATAAA	-15	NA	93296187	93283992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93291587_93291646_93293467_93293497_93295050_93295137_93296043
ENSMUSG00000022637.12_0	chr16	+	6405	19	FSM	ENSMUSG00000022637.12	ENSMUST00000226593.2	3864	19	-13	-2528	-13	-7	multi-exon	FALSE	canonical	3	31	junction_16	12.3923761908006	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATGCCTTTTGTATGT	NA	False	NA	NA	False	TATAAA	-10	NA	51851955	52028404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_51852049_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52006711_52006844_52009375_52009517_52014521_52014642_52024795
ENSMUSG00000022637.12_1	chr16	+	6346	19	FSM	ENSMUSG00000022637.12	ENSMUST00000227062.2	3728	19	31	-2649	-12	-15	multi-exon	FALSE	canonical	3	23	junction_2	15.6067609597354	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGTTAACAAATGCCTT	NA	False	NA	NA	False	TATAAA	-2	NA	51851956	52028396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_51852049_51852540_51852623_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52009375_52009517_52014521_52014642_52024795
ENSMUSG00000022637.12_10	chr16	+	6522	20	NIC	ENSMUSG00000022637.12	novel	3866	19	NA	NA	-9	-7	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	17.7907193584424	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATGCCTTTTGTATGT	NA	False	NA	NA	False	TATAAA	-10	NA	51851959	52028404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_51852049_51852540_51852662_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52006711_52006844_52009375_52009517_52014521_52014642_52024795
ENSMUSG00000022637.12_17	chr16	+	3167	1	Genic_Genomic	ENSMUSG00000022637.12	novel	NA	NA	NA	NA	254	2168	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51870269	51873436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_+_51870300_51873400
ENSMUSG00000022637.12_2	chr16	+	6491	20	NIC	ENSMUSG00000022637.12	novel	3864	19	NA	NA	-17	-7	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	15.1180030632521	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATGCCTTTTGTATGT	NA	False	NA	NA	False	TATAAA	-10	NA	51851951	52028404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_51852049_51852540_51852623_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52006711_52006844_52009375_52009517_52014521_52014642_52024795
ENSMUSG00000022637.12_23	chr16	+	2541	1	ISM	ENSMUSG00000022637.12	ENSMUST00000114471.3	6648	18	174276	7	52975	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATGCCTTTTGTATGT	NA	False	NA	NA	False	TATAAA	-10	NA	52025863	52028404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_52025900_52028400
ENSMUSG00000022637.12_5	chr16	+	6412	19	NIC	ENSMUSG00000022637.12	novel	3728	19	NA	NA	12	-7	combination_of_known_junctions	TRUE	canonical	1	2	junction_2	18.3743648584276	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATGCCTTTTGTATGT	NA	False	NA	NA	False	TATAAA	-10	NA	51851937	52028404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_51852049_51852540_51852662_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52009375_52009517_52014521_52014642_52024795
ENSMUSG00000022637.12_6	chr16	+	6270	18	FSM	ENSMUSG00000022637.12	ENSMUST00000114471.3	6648	18	370	8	-11	-8	multi-exon	FALSE	canonical	3	25	junction_15	12.7088776425873	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAAATGCCTTTTGTATG	NA	False	NA	NA	False	TATAAA	-9	NA	51851957	52028403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_51852049_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52009375_52009517_52014521_52014642_52024795
ENSMUSG00000022641.16_0	chr16	-	2706	1	ISM	ENSMUSG00000022641.16	ENSMUST00000138166.8	8743	17	237833	8	136436	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGATATTATTCAAATAC	NA	False	NA	-9	True	AATAAA	-27	NA	50014920	50012214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_50012200_50014900
ENSMUSG00000022641.16_1	chr16	-	8720	17	NNC	ENSMUSG00000022641.16	novel	8743	17	NA	NA	-6	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5.13413819447821	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATTTTAAAGATATTAT	9724	False	NA	-17	True	AATAAA	-19	NA	50252743	50012222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_50018010_50020770_50020955_50022740_50022939_50029447_50029508_50040807_50040960_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252604
ENSMUSG00000022641.16_10	chr16	-	7051	7	ISM	ENSMUSG00000022641.16	ENSMUST00000114488.8	3293	15	106169	-5299	106169	-16	3prime_fragment	FALSE	canonical	2	8	junction_5	3.685557397916	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATTTTAAAGATATTAT	1101	False	NA	-17	True	AATAAA	-19	NA	50045187	50012222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_50018010_50020770_50020955_50022740_50022939_50029447_50029508_50040807_50040957_50043612_50043749_50044650
ENSMUSG00000022641.16_3	chr16	-	4795	17	FSM	ENSMUSG00000022641.16	ENSMUST00000138166.8	8743	17	1	3947	0	-11	multi-exon	FALSE	canonical	1	5	junction_15	4.24079886342184	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGAAAAACATAGAGGTTT	9715	False	NA	NA	False	NA	NA	NA	50252752	50016153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_50018010_50020770_50020955_50022740_50022939_50029447_50029508_50040807_50040957_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252604
ENSMUSG00000022641.16_5	chr16	-	3993	17	NIC	ENSMUSG00000022641.16	novel	8743	17	NA	NA	20	-8	combination_of_known_junctions	FALSE	canonical	1	2	junction_16	4.8541219597369	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATATAAACAAACAAAAAAAA	9815	False	NA	NA	False	NA	NA	NA	50252652	50016986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_50018010_50020770_50020955_50022740_50022939_50029447_50029508_50040807_50040957_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252473
ENSMUSG00000022652.8_0	chr16	+	3414	28	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	63	623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	346.731012546799	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATTTTGATGTATAATG	NA	False	NA	12	True	ATTAAA	-16	NA	48251662	48451886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
ENSMUSG00000022652.8_113	chr16	+	974	8	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17046	5	at_least_one_novel_splicesite	FALSE	canonical	3	485	junction_1	244.404064898224	123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACATTTCCTTTTGAT	741	False	NA	16	True	AATAAA	-21	NA	48432075	48451268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_48432222_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ENSMUSG00000022652.8_115	chr16	+	1396	9	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17051	623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	424.555061211146	95	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATTTTGATGTATAATG	746	False	NA	12	True	ATTAAA	-16	NA	48432080	48451886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_48432222_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
ENSMUSG00000022652.8_2	chr16	+	2987	27	FSM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	63	-5	63	5	multi-exon	FALSE	canonical	0	0	junction_19	334.347850609362	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACATTTCCTTTTGAT	NA	False	NA	16	True	AATAAA	-21	NA	48251662	48451268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ENSMUSG00000022652.8_4	chr16	+	3312	27	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	63	623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	351.484057816864	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATTTTGATGTATAATG	NA	False	NA	12	True	ATTAAA	-16	NA	48251662	48451886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
ENSMUSG00000022652.8_5	chr16	+	2885	26	NIC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	63	5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_19	338.451806909049	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACATTTCCTTTTGAT	NA	False	NA	16	True	AATAAA	-21	NA	48251662	48451268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ENSMUSG00000022656.16_4	chr16	-	3088	6	FSM	ENSMUSG00000022656.16	ENSMUST00000023334.15	3062	6	-33	7	-33	-7	multi-exon	FALSE	canonical	3	205	junction_1	19.3328735577513	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATATCATGAGATTTTT	NA	False	NA	-14	True	ATTAAA	-6	NA	46317363	46267538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_46269332_46274986_46275139_46278476_46278595_46279177_46279475_46284180_46284523_46316977
ENSMUSG00000022656.16_5	chr16	-	2657	5	ISM	ENSMUSG00000022656.16	ENSMUST00000023334.15	3062	6	32859	1	-15598	-1	3prime_fragment	FALSE	canonical	3	205	junction_1	21.2779228309532	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGAGATTTTTGGGGGT	NA	False	NA	-8	True	ATTAAA	-12	NA	46284471	46267532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_46269332_46274986_46275139_46278476_46278595_46279177_46279475_46284180
ENSMUSG00000022658.11_0	chr16	-	1046	4	FSM	ENSMUSG00000022658.11	ENSMUST00000096057.5	1240	4	194	0	194	0	multi-exon	FALSE	canonical	3	70	junction_1	1.63299316185545	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGAGTATAACTTTATT	NA	False	NA	-9	True	AATAAA	-15	NA	45544777	45531592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_45532073_45533294_45533398_45543285_45543461_45544489
ENSMUSG00000022658.11_1	chr16	-	359	1	ISM	ENSMUSG00000022658.11	ENSMUST00000096057.5	1240	4	13020	0	13020	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGAGTATAACTTTATT	61	False	NA	-9	True	AATAAA	-15	NA	45531951	45531592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_45531600_45532000
ENSMUSG00000022658.11_3	chr16	-	2555	3	ISM	ENSMUSG00000022658.11	ENSMUST00000096057.5	1240	4	-286	0	-286	0	intron_retention	FALSE	canonical	3	70	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGAGTATAACTTTATT	NA	False	NA	-9	True	AATAAA	-15	NA	45545257	45531592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_45532073_45533294_45533398_45543285
ENSMUSG00000022661.15_1	chr16	-	2209	5	NIC	ENSMUSG00000022661.15	novel	2347	6	NA	NA	16	6	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	11.6270159542335	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTTTTTTTCTCTATG	NA	False	NA	NA	False	AATAAA	-13	NA	45229354	45202491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_45203821_45212607_45212752_45214955_45215229_45217331_45217659_45229218
ENSMUSG00000022661.15_2	chr16	-	2305	6	FSM	ENSMUSG00000022661.15	ENSMUST00000163230.8	2347	6	48	-6	2	6	multi-exon	FALSE	canonical	3	12	junction_1	7.98498591107085	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTTTTTTTCTCTATG	NA	False	NA	NA	False	AATAAA	-13	NA	45229368	45202491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_45203821_45212607_45212752_45214955_45215229_45217331_45217659_45220584_45220667_45229218
ENSMUSG00000022661.15_6	chr16	-	261	2	FSM	ENSMUSG00000022661.15	ENSMUST00000172091.2	281	2	27	-7	16	7	multi-exon	FALSE	canonical	3	15	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTATCCTTTGACTCCC	NA	False	NA	NA	False	AATAAA	-24	NA	45229354	45227549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_45227675_45229218
ENSMUSG00000022663.4_0	chr16	+	1398	12	FSM	ENSMUSG00000022663.4	ENSMUST00000023343.4	2057	12	14	645	14	-1	multi-exon	FALSE	canonical	3	353	junction_3	33.1011472673263	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCTTATTTGTTTAATAAA	NA	False	NA	14	True	AATAAA	-16	NA	44979161	45008256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_44979535_44982768_44982811_44987342_44987393_44990228_44990300_44992008_44992117_44995611_44995662_44998592_44998675_45003018_45003054_45003183_45003340_45004044_45004173_45006528_45006598_45008022
ENSMUSG00000022663.4_9	chr16	+	1319	11	NIC	ENSMUSG00000022663.4	novel	2057	12	NA	NA	43	-1	combination_of_known_splicesites	FALSE	canonical	3	33	junction_2	116.159201099181	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCTTATTTGTTTAATAAA	NA	False	NA	14	True	AATAAA	-16	NA	44979190	45008256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_44979535_44982768_44982811_44990228_44990300_44992008_44992117_44995611_44995662_44998592_44998675_45003018_45003054_45003183_45003340_45004044_45004173_45006528_45006598_45008022
ENSMUSG00000022664.12_1	chr16	-	2947	7	FSM	ENSMUSG00000022664.12	ENSMUST00000023344.10	4233	7	47	1239	-4	1134	multi-exon	FALSE	canonical	3	47	junction_3	4.7404875511093	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAATCTGTACTATGT	NA	False	NA	-12	True	ATTAAA	-18	NA	44979022	44961174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_44962576_44963983_44964765_44967630_44967699_44971815_44971950_44972939_44973039_44977823_44978010_44978744
ENSMUSG00000022664.12_3	chr16	-	1954	2	ISM	ENSMUSG00000022664.12	ENSMUST00000181177.2	865	4	14393	-1134	7748	1134	3prime_fragment	FALSE	canonical	3	54	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAATCTGTACTATGT	NA	False	NA	-12	True	ATTAAA	-18	NA	44964536	44961174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_44962576_44963983
ENSMUSG00000022664.12_6	chr16	-	2942	7	NNC	ENSMUSG00000022664.12	novel	4233	7	NA	NA	-4	1132	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	20.6027236602888	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTGAATCTGTACTAT	NA	False	NA	-14	True	ATTAAA	-16	NA	44979022	44961176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_44962576_44963983_44964765_44967630_44967699_44971815_44971947_44972939_44973039_44977823_44978010_44978744
ENSMUSG00000022668.11_1	chr16	-	1174	6	FSM	ENSMUSG00000022668.11	ENSMUST00000162512.8	3415	6	18	2223	14	151	multi-exon	FALSE	canonical	3	89	junction_4	12.4739729036101	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTATAAATGTCTACTGT	NA	False	NA	79	True	TATAAA	-24	NA	44566708	44559353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566361
ENSMUSG00000022668.11_2	chr16	-	1883	1	Genic_Genomic	ENSMUSG00000022668.11	novel	NA	NA	NA	NA	7634	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGTCATGGTGTT	446	False	NA	NA	False	NA	NA	NA	44559012	44557129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_-_44557100_44559000
ENSMUSG00000022668.11_4	chr16	-	1192	6	NIC	ENSMUSG00000022668.11	novel	836	6	NA	NA	14	258	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	48.4520381408254	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATAACTCTTCTTCTAG	NA	False	NA	NA	False	AATAGA	-17	NA	44566708	44559246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565645_44565857_44566562
ENSMUSG00000022668.11_5	chr16	-	3505	6	NIC	ENSMUSG00000022668.11	novel	3415	6	NA	NA	14	-4	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	40.3187301387333	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGTCATG	NA	False	NA	NA	False	NA	NA	NA	44566708	44557134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565645_44565857_44566361
ENSMUSG00000022668.11_6	chr16	-	3295	5	FSM	ENSMUSG00000022668.11	ENSMUST00000161436.2	739	5	-63	-2493	13	-4	multi-exon	FALSE	canonical	0	0	junction_4	49.7562810105418	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGTCATG	NA	False	NA	NA	False	NA	NA	NA	44566709	44557134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44566361
ENSMUSG00000022668.11_7	chr16	-	2976	2	NIC	ENSMUSG00000022668.11	novel	583	3	NA	NA	13	942	intron_retention	FALSE	canonical	3	112	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATATAATAATTTGA	NA	False	NA	NA	False	NA	NA	NA	44566709	44563228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_44565857_44566361
ENSMUSG00000022668.11_8	chr16	-	3264	5	NIC	ENSMUSG00000022668.11	novel	3415	6	NA	NA	12	-4	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	47.3675785743793	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGTCATG	NA	False	NA	NA	False	NA	NA	NA	44566710	44557134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_44559732_44560391_44560511_44562866_44562967_44565757_44565857_44566361
ENSMUSG00000022671.14_0	chr16	-	621	3	FSM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	407	7	-218	2	multi-exon	FALSE	canonical	3	566	junction_1	21	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGTTCTATGTGGAGTC	NA	False	NA	-9	True	ATTAAA	-15	NA	15680804	15666311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_15666594_15680261_15680408_15680611
ENSMUSG00000022671.14_1	chr16	-	981	4	NNC	ENSMUSG00000022671.14	novel	758	4	NA	NA	-13	2	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_3	257.016644510731	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGTTCTATGTGGAGTC	NA	False	NA	-9	True	ATTAAA	-15	NA	15681187	15666311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_15666594_15680261_15680408_15680611_15680797_15680819
ENSMUSG00000022671.14_2	chr16	-	712	4	FSM	ENSMUSG00000022671.14	ENSMUST00000117136.2	758	4	50	-4	-9	0	multi-exon	FALSE	canonical	3	85	junction_3	237.265439727089	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTATGTGGAGTCCT	NA	False	NA	-7	True	ATTAAA	-17	NA	15681183	15666309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_15666594_15680261_15680408_15680611_15680797_15681086
ENSMUSG00000022672.9_1	chr16	+	12653	86	FSM	ENSMUSG00000022672.9	ENSMUST00000023352.9	12647	86	-14	8	9	-8	multi-exon	TRUE	canonical	3	25	junction_36	18.5618353107608	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATATTTCTTCCTTGTT	3511	False	NA	12	True	AATAAA	-8	NA	15455738	15660091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_15455907_15466583_15466661_15466751_15466845_15468514_15468590_15469295_15469405_15470102_15470216_15470314_15470415_15472545_15472602_15472684_15472716_15474119_15474278_15480846_15480994_15482071_15482237_15485452_15485622_15487145_15487196_15488376_15488503_15490120_15490274_15491832_15491946_15492302_15492463_15493143_15493231_15494767_15494888_15496066_15496227_15502000_15502108_15505222_15505314_15507135_15507297_15508125_15508276_15514986_15515095_15516660_15516888_15518506_15518602_15519918_15520019_15523034_15523169_15524587_15524843_15526574_15526796_15531443_15531653_15532011_15532145_15532779_15532939_15533729_15533931_15534869_15535056_15535594_15535700_15537208_15537377_15543196_15543325_15544365_15544574_15545447_15545627_15547702_15547872_15548303_15548370_15549413_15549487_15551844_15551994_15552763_15552902_15554616_15554737_15555683_15555825_15557295_15557448_15558062_15558195_15570599_15570712_15577348_15577474_15577565_15577716_15585731_15585906_15586414_15586514_15587657_15587866_15589887_15590078_15591462_15591679_15593720_15593834_15594892_15595025_15597241_15597422_15600920_15601127_15603773_15603913_15605008_15605198_15608313_15608539_15609736_15609846_15612891_15613004_15617730_15617918_15623785_15623961_15625897_15626092_15627459_15627656_15628568_15628715_15633755_15633968_15634434_15634523_15634614_15634759_15647479_15647685_15649134_15649203_15651539_15651761_15652010_15652104_15653015_15653106_15653753_15653826_15653895_15654098_15655826_15656016_15656948_15657089_15659634
ENSMUSG00000022672.9_27	chr16	+	5060	30	ISM	ENSMUSG00000022672.9	ENSMUST00000023352.9	12647	86	131926	25	131926	-25	3prime_fragment	FALSE	canonical	3	51	junction_2	15.3766813896516	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAAGAATATGACA	NA	False	NA	-5	True	NA	NA	NA	15587678	15660074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_15587866_15589887_15590078_15591462_15591679_15593720_15593834_15594892_15595025_15597241_15597422_15600920_15601127_15603773_15603913_15605008_15605198_15608313_15608539_15609736_15609846_15612891_15613004_15617730_15617918_15623785_15623961_15625897_15626092_15627459_15627656_15628568_15628715_15633755_15633968_15634434_15634523_15634614_15634759_15647479_15647685_15649134_15649203_15651539_15651761_15652010_15652104_15653015_15653106_15653753_15653826_15653895_15654098_15655826_15656016_15656948_15657089_15659634
ENSMUSG00000022672.9_28	chr16	+	4788	29	ISM	ENSMUSG00000022672.9	ENSMUST00000023352.9	12647	86	134243	2	134243	-2	3prime_fragment	FALSE	canonical	3	51	junction_1	15.3285031951617	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTCCTTGTTTCAAAG	NA	False	NA	18	True	AATAAA	-14	NA	15589995	15660097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_15590078_15591462_15591679_15593720_15593834_15594892_15595025_15597241_15597422_15600920_15601127_15603773_15603913_15605008_15605198_15608313_15608539_15609736_15609846_15612891_15613004_15617730_15617918_15623785_15623961_15625897_15626092_15627459_15627656_15628568_15628715_15633755_15633968_15634434_15634523_15634614_15634759_15647479_15647685_15649134_15649203_15651539_15651761_15652010_15652104_15653015_15653106_15653753_15653826_15653895_15654098_15655826_15656016_15656948_15657089_15659634
ENSMUSG00000022672.9_34	chr16	+	4672	19	ISM	ENSMUSG00000022672.9	ENSMUST00000023352.9	12647	86	155663	3	155663	-3	3prime_fragment	FALSE	canonical	3	60	junction_2	11.9222015118387	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTTCCTTGTTTCAAA	6931	False	NA	17	True	AATAAA	-13	NA	15611415	15660096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_15613004_15617730_15617918_15623785_15623961_15625897_15626092_15627459_15627656_15628568_15628715_15633755_15633968_15634434_15634523_15634614_15634759_15647479_15647685_15649134_15649203_15651539_15651761_15652010_15652104_15653015_15653106_15653753_15653826_15653895_15654098_15655826_15656016_15656948_15657089_15659634
ENSMUSG00000022672.9_39	chr16	+	2630	16	ISM	ENSMUSG00000022672.9	ENSMUST00000023352.9	12647	86	170234	6	170234	-6	3prime_fragment	FALSE	canonical	3	63	junction_1	10.0323919824182	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATATTTCTTCCTTGTTTC	NA	False	NA	14	True	AATAAA	-10	NA	15625986	15660093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_15626092_15627459_15627656_15628568_15628715_15633755_15633968_15634434_15634523_15634614_15634759_15647479_15647685_15649134_15649203_15651539_15651761_15652010_15652104_15653015_15653106_15653753_15653826_15653895_15654098_15655826_15656016_15656948_15657089_15659634
ENSMUSG00000022672.9_76	chr16	+	4547	28	ISM	ENSMUSG00000022672.9	ENSMUST00000023352.9	12647	86	135873	-2	135873	2	3prime_fragment	FALSE	canonical	3	51	junction_5	15.0045260661287	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCTTGTTTCAAAGAATC	NA	False	NA	22	True	AATAAA	-18	NA	15591625	15660101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_15591679_15593720_15593834_15594892_15595025_15597241_15597422_15600920_15601127_15603773_15603913_15605008_15605198_15608313_15608539_15609736_15609846_15612891_15613004_15617730_15617918_15623785_15623961_15625897_15626092_15627459_15627656_15628568_15628715_15633755_15633968_15634434_15634523_15634614_15634759_15647479_15647685_15649134_15649203_15651539_15651761_15652010_15652104_15653015_15653106_15653753_15653826_15653895_15654098_15655826_15656016_15656948_15657089_15659634
ENSMUSG00000022672.9_81	chr16	+	2443	15	ISM	ENSMUSG00000022672.9	ENSMUST00000023352.9	12647	86	171793	2	171793	-2	3prime_fragment	FALSE	canonical	3	73	junction_1	8.50600028311348	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTCCTTGTTTCAAAG	NA	False	NA	18	True	AATAAA	-14	NA	15627545	15660097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_15627656_15628568_15628715_15633755_15633968_15634434_15634523_15634614_15634759_15647479_15647685_15649134_15649203_15651539_15651761_15652010_15652104_15653015_15653106_15653753_15653826_15653895_15654098_15655826_15656016_15656948_15657089_15659634
ENSMUSG00000022673.6_0	chr16	-	4110	17	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	54	1498	at_least_one_novel_splicesite	TRUE	non_canonical	3	128	junction_1	350.692479023645	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGACTAAATAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	15455210	15440262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_15440367_15441289_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
ENSMUSG00000022673.6_5	chr16	-	3319	16	FSM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	54	216	54	-3	multi-exon	FALSE	canonical	3	1276	junction_6	130.715909088714	2624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAGTAATACTTGGTTT	NA	False	NA	-11	True	AATAAA	-5	NA	15455210	15441976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
ENSMUSG00000022674.16_0	chr16	-	1181	4	FSM	ENSMUSG00000022674.16	ENSMUST00000115777.10	4207	4	27	2999	-7	-171	multi-exon	FALSE	canonical	3	110	junction_1	627.165050046636	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGACTGTGCTATTTCTG	NA	False	NA	NA	False	AATAAA	-17	NA	15412361	15373539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15412323
ENSMUSG00000022674.16_1	chr16	-	2428	1	ISM	ENSMUSG00000022674.16	ENSMUST00000115777.10	4207	4	38654	766	38602	-766	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACTTTTCTAGAATTTT	NA	False	NA	-1	True	AATAAA	-27	NA	15373734	15371306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_15371300_15373700
ENSMUSG00000022674.16_2	chr16	-	1055	3	FSM	ENSMUSG00000022674.16	ENSMUST00000115776.2	1236	3	10	171	-7	-171	multi-exon	FALSE	canonical	3	117	junction_1	698.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGACTGTGCTATTTCTG	NA	False	NA	NA	False	AATAAA	-17	NA	15412361	15373539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_15374408_15398922_15399072_15412323
ENSMUSG00000022674.16_4	chr16	-	3186	3	ISM	ENSMUSG00000022674.16	ENSMUST00000115777.10	4207	4	13317	956	13265	-956	3prime_fragment	FALSE	canonical	3	110	junction_1	621	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTTCAAGAGATTTTAA	NA	False	NA	-112	True	TATAAA	-25	NA	15399071	15371496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_15374408_15394878_15395005_15398922
ENSMUSG00000022676.8_0	chr16	+	2013	3	FSM	ENSMUSG00000022676.8	ENSMUST00000023356.8	2021	3	0	8	0	-8	multi-exon	FALSE	canonical	2	2	junction_2	2	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAAAGTAGTTACTCAT	NA	False	NA	NA	False	AATAAA	-9	NA	14523715	14527241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_14523917_14524574_14525124_14525978
ENSMUSG00000022677.16_0	chr16	-	1152	3	FSM	ENSMUSG00000022677.16	ENSMUST00000230495.2	1147	3	-3	-2	0	-2	multi-exon	FALSE	canonical	3	67	junction_2	185.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTATGGTCATGGT	NA	False	NA	-6	True	NA	NA	NA	14135211	14117109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_14118074_14122317_14122452_14135157
ENSMUSG00000022677.16_1	chr16	-	1432	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	31	2	0	-2	multi-exon	FALSE	canonical	3	293	junction_3	56.7384349449295	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTATGGTCATGGT	NA	False	NA	-6	True	NA	NA	NA	14135208	14117109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
ENSMUSG00000022677.16_2	chr16	-	1240	4	NIC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	-3	-2	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	177.216126680264	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTATGGTCATGGT	NA	False	NA	-6	True	NA	NA	NA	14135214	14117109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_14118074_14122317_14122452_14128910_14128996_14135157
ENSMUSG00000022678.17_0	chr16	+	3732	8	ISM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	30	10	1	0	intron_retention	FALSE	canonical	3	242	junction_7	27.7378397699251	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981168	14010782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950
ENSMUSG00000022678.17_1	chr16	+	2253	9	NNC	ENSMUSG00000022678.17	novel	2335	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	99.5386231570439	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981161	14010782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008101_14009586
ENSMUSG00000022678.17_2	chr16	+	2250	9	FSM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	27	10	-2	0	multi-exon	FALSE	canonical	3	240	junction_8	30.8696857774743	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981165	14010782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
ENSMUSG00000022678.17_7	chr16	+	2375	9	FSM	ENSMUSG00000022678.17	ENSMUST00000115795.9	2335	9	-40	0	1	0	multi-exon	FALSE	canonical	3	25	junction_8	91.5818452260054	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981168	14010782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009453
ENSMUSG00000022679.14_11	chr16	+	2226	4	FSM	ENSMUSG00000022679.14	ENSMUST00000143697.8	580	4	-1	-1645	-1	-58	multi-exon	FALSE	canonical	3	17	junction_2	74.5311269798659	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAGGTATATCCCTGTAT	527	False	NA	-49	True	AATAGA	-16	NA	13758564	13766388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13758888_13762529_13762601_13764392_13764452_13764615
ENSMUSG00000022679.14_19	chr16	+	187	1	ISM	ENSMUSG00000022679.14	ENSMUST00000128757.8	3089	4	46006	266	8073	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	8993	False	NA	NA	False	NA	NA	NA	13767030	13767217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_13767000_13767200
ENSMUSG00000022679.14_5	chr16	+	2301	5	FSM	ENSMUSG00000022679.14	ENSMUST00000148966.2	2315	5	1	13	1	-13	multi-exon	FALSE	canonical	3	36	junction_1	78.6431815226215	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTACTTACTGGCAGGAT	522	False	NA	-4	True	NA	NA	NA	13758559	13766433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13758888_13759983_13760038_13762529_13762601_13764421_13764452_13764615
ENSMUSG00000022679.14_6	chr16	+	2254	4	FSM	ENSMUSG00000022679.14	ENSMUST00000023360.14	3087	4	33	800	3	-4	multi-exon	FALSE	canonical	3	154	junction_1	20.3960780543711	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGCAGGATTTGGGTATT	524	False	NA	5	True	NA	NA	NA	13758561	13766442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615
ENSMUSG00000022679.14_9	chr16	+	3063	5	NNC	ENSMUSG00000022679.14	novel	2315	5	NA	NA	1	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	80.7635437558308	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	522	False	NA	NA	False	NA	NA	NA	13758559	13767476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615_13767023_13767249
ENSMUSG00000022680.15_0	chr16	-	3180	24	NNC	ENSMUSG00000022680.15	novel	4228	24	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_22	39.8562160573743	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTGTTGCTGTTTGTC	9736	False	NA	-12	True	NA	NA	NA	13720953	13652018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_13652711_13654249_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702493_13705560_13705635_13720778
ENSMUSG00000022680.15_11	chr16	-	2958	23	FSM	ENSMUSG00000022680.15	ENSMUST00000115804.9	2880	23	-73	-5	33	0	multi-exon	FALSE	canonical	3	10	junction_1	45.2457020469238	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTGTTGCTGTTTGTC	9731	False	NA	-12	True	NA	NA	NA	13720958	13652018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_13652711_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
ENSMUSG00000022680.15_2	chr16	-	3173	24	FSM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	48	1007	-24	0	multi-exon	TRUE	canonical	3	113	junction_1	25.0911382243075	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTGTTGCTGTTTGTC	9746	False	NA	-12	True	NA	NA	NA	13720943	13652018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_13652711_13654249_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
ENSMUSG00000022680.15_9	chr16	-	3299	23	FSM	ENSMUSG00000022680.15	ENSMUST00000154150.8	3178	23	-121	0	24	0	multi-exon	FALSE	canonical	3	195	junction_15	13.5268328374224	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTAACTTTTGAATAA	9722	False	NA	NA	False	NA	NA	NA	13720967	13653455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
ENSMUSG00000022681.16_0	chr16	+	1091	10	FSM	ENSMUSG00000022681.16	ENSMUST00000023362.15	1175	10	75	9	1	-6	multi-exon	FALSE	canonical	3	538	junction_1	69.8729004852541	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCAATTTGTTTAGATG	NA	False	NA	NA	False	AATAAA	-14	NA	13637189	13653306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022681.16_1	chr16	+	988	9	FSM	ENSMUSG00000022681.16	ENSMUST00000136618.8	1014	9	20	6	1	-6	multi-exon	FALSE	canonical	3	118	junction_1	197.353743313878	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCAATTTGTTTAGATG	NA	False	NA	NA	False	AATAAA	-14	NA	13637189	13653306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13637301_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022681.16_14	chr16	+	1033	9	NIC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	5	-6	combination_of_known_splicesites	FALSE	canonical	3	44	junction_5	218.732963622313	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCAATTTGTTTAGATG	NA	False	NA	NA	False	AATAAA	-14	NA	13637193	13653306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022681.16_15	chr16	+	923	8	NIC	ENSMUSG00000022681.16	novel	1014	9	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	230.175975270741	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTTGTTTAGATGACTTT	NA	False	NA	NA	False	AATAAA	-19	NA	13637193	13653311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_13637301_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022682.9_0	chr16	+	3550	18	FSM	ENSMUSG00000022682.9	ENSMUST00000023363.8	3582	18	31	1	31	-1	multi-exon	FALSE	canonical	3	873	junction_12	92.1558406284578	2112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTACTGTGTTGAATTTT	NA	False	NA	26	True	AATAAA	-19	NA	13598607	13632702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
ENSMUSG00000022682.9_6	chr16	+	3548	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	31	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	259.913759985419	169	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTACTGTGTTGAATTT	NA	False	NA	25	True	AATAAA	-18	NA	13598607	13632701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607397_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
ENSMUSG00000022683.14_0	chr16	-	754	3	NIC	ENSMUSG00000022683.14	novel	1423	4	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_2	25	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGTGTAAGAGGTAAAT	NA	False	NA	0	True	AATAAA	-20	NA	13548327	13532920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_13533461_13542972_13543080_13548220
ENSMUSG00000022683.14_1	chr16	-	936	4	FSM	ENSMUSG00000022683.14	ENSMUST00000023364.7	1423	4	487	0	-53	0	multi-exon	FALSE	canonical	3	37	junction_3	8.17856276425687	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCTTGTGTAAGAGGTAA	NA	False	NA	-2	True	AATAAA	-18	NA	13548360	13532922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_13533461_13542972_13543080_13545826_13545978_13548220
ENSMUSG00000022684.16_0	chr16	+	2865	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	126	12	-3	-2	multi-exon	TRUE	canonical	3	82	junction_1	10.7760126660835	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAAATACAACCTTTATA	NA	False	NA	NA	False	AATAAA	-12	NA	13489847	13521464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
ENSMUSG00000022684.16_1	chr16	+	1563	7	ISM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	135	4294	6	29	5prime_fragment	FALSE	canonical	3	82	junction_1	11.6105794668292	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATTCTACCTTGGCT	NA	False	NA	NA	False	AATAAA	-8	NA	13489856	13517182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736
ENSMUSG00000022685.10_0	chr16	-	2883	24	FSM	ENSMUSG00000022685.10	ENSMUST00000058884.10	2906	24	19	4	-2	-4	multi-exon	FALSE	canonical	1	121	junction_21	52.0035988284976	458	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTCTGCCTTTAACTGT	NA	False	NA	-11	True	ATTAAA	-12	NA	13486015	13355827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
ENSMUSG00000022686.15_0	chr16	+	4132	4	FSM	ENSMUSG00000022686.15	ENSMUST00000079780.10	4258	4	118	8	-47	-8	multi-exon	FALSE	canonical	3	73	junction_1	15.8954920234218	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCATCAGTAATGT	NA	False	NA	-1	True	AATAAA	-7	NA	19579101	19591205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_19579228_19579390_19579578_19583857_19583965_19587493
ENSMUSG00000022686.15_14	chr16	+	4052	3	FSM	ENSMUSG00000022686.15	ENSMUST00000119468.2	2229	3	9	-1832	9	-7	multi-exon	FALSE	canonical	3	9	junction_1	50.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATCATCAGTAATGTG	NA	False	NA	0	True	AATAAA	-8	NA	19579812	19591206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_19580045_19583857_19583965_19587493
ENSMUSG00000022686.15_15	chr16	+	2456	1	ISM	ENSMUSG00000022686.15	ENSMUST00000164397.8	4872	6	9775	289	8955	1	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAGTAATGTGAATTTAAA	NA	False	NA	8	True	AATAAA	-16	NA	19588758	19591214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_19588800_19591200
ENSMUSG00000022686.15_2	chr16	+	4037	3	NIC	ENSMUSG00000022686.15	novel	4872	6	NA	NA	-47	4	combination_of_known_splicesites	TRUE	canonical	1	7	junction_2	33	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAATGTGAATTTAAAATC	NA	False	NA	11	True	AATAAA	-19	NA	19579101	19591217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_19579228_19579390_19579578_19587493
ENSMUSG00000022686.15_3	chr16	+	4240	5	FSM	ENSMUSG00000022686.15	ENSMUST00000121344.8	4175	5	157	-222	-34	-8	multi-exon	FALSE	canonical	2	7	junction_3	34.3829536253068	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCATCAGTAATGT	NA	False	NA	-1	True	AATAAA	-7	NA	19579114	19591205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_19579228_19579390_19579578_19583857_19583965_19584250_19584372_19587493
ENSMUSG00000022686.15_4	chr16	+	4327	5	NIC	ENSMUSG00000022686.15	novel	4872	6	NA	NA	-39	-8	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	44.4690903887183	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCATCAGTAATGT	NA	False	NA	-1	True	AATAAA	-7	NA	19579109	19591205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_19579228_19579390_19579578_19582900_19583104_19583857_19583965_19587493
ENSMUSG00000022686.15_8	chr16	+	4078	3	FSM	ENSMUSG00000022686.15	ENSMUST00000131557.8	444	3	-15	-3619	-15	-6	multi-exon	FALSE	canonical	3	81	junction_1	14.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCATCAGTAATGTGA	NA	False	NA	1	True	AATAAA	-9	NA	19579320	19591207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_19579578_19583857_19583965_19587493
ENSMUSG00000022687.13_0	chr16	-	4391	19	NNC	ENSMUSG00000022687.13	novel	4451	19	NA	NA	56	-1	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	2.77332977207749	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTAGTCACGAGTGAGTC	NA	False	NA	-6	True	AATAAA	-25	NA	44379204	44305412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_44306163_44307074_44307266_44307712_44307790_44307979_44308216_44308872_44309095_44310502_44310626_44310939_44311046_44311534_44311717_44312055_44312263_44312670_44312782_44313175_44313336_44316614_44316923_44319763_44320037_44320712_44321007_44322008_44322153_44323891_44324039_44340587_44340867_44341521_44341699_44378800
ENSMUSG00000022687.13_1	chr16	-	4439	19	FSM	ENSMUSG00000022687.13	ENSMUST00000114634.3	4451	19	11	1	11	-1	multi-exon	FALSE	canonical	2	4	junction_3	3.24132269906996	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTAGTCACGAGTGAGTC	NA	False	NA	-6	True	AATAAA	-25	NA	44379249	44305412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_44306163_44307074_44307266_44307712_44307793_44307979_44308216_44308872_44309095_44310502_44310626_44310939_44311046_44311534_44311717_44312055_44312263_44312670_44312782_44313175_44313336_44316614_44316923_44319763_44320037_44320712_44321007_44322008_44322153_44323891_44324039_44340587_44340867_44341521_44341699_44378800
ENSMUSG00000022687.13_2	chr16	-	4261	19	NNC	ENSMUSG00000022687.13	novel	4451	19	NA	NA	182	-8	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	3.04138126514911	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTCATCTTAGTCACGA	NA	False	NA	-13	True	AATAAA	-18	NA	44379078	44305419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_44306163_44307074_44307266_44307712_44307790_44307979_44308216_44308872_44309095_44310502_44310626_44310939_44311046_44311534_44311717_44312055_44312263_44312670_44312782_44313175_44313339_44316614_44316923_44319763_44320037_44320712_44321007_44322008_44322153_44323891_44324039_44340587_44340867_44341521_44341699_44378800
ENSMUSG00000022698.18_0	chr16	+	3609	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	-15	893	8	1	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	1743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGATCTGTCTGTAACTG	NA	False	NA	18	True	AATAAA	-18	NA	43960200	43982836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
ENSMUSG00000022698.18_1	chr16	+	3606	5	FSM	ENSMUSG00000022698.18	ENSMUST00000063520.15	3557	5	-48	-1	8	1	multi-exon	FALSE	canonical	3	375	junction_1	525.255652040033	744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGATCTGTCTGTAACTG	NA	False	NA	18	True	AATAAA	-18	NA	43960200	43982836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_43960475_43976775_43976910_43977436_43977557_43978242_43978310_43979825
ENSMUSG00000022698.18_23	chr16	+	1762	1	ISM	ENSMUSG00000022698.18	ENSMUST00000159514.8	3756	6	20883	0	20821	0	mono-exon	FALSE	NA	NA	NA	NA	NA	228	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATCTGTCTGTAACTGT	NA	False	NA	19	True	AATAAA	-19	NA	43981075	43982837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_43981100_43982800
ENSMUSG00000022701.19_10	chr16	+	3041	17	NIC	ENSMUSG00000022701.19	novel	3745	16	NA	NA	-16	-622	combination_of_known_junctions	FALSE	canonical	1	3	junction_9	27.1545777678461	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGCCTGCCTGGAC	NA	False	NA	11	True	AATAAA	-11	NA	43710286	43784055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43762150_43762193_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
ENSMUSG00000022701.19_20	chr16	+	1756	9	ISM	ENSMUSG00000022701.19	ENSMUST00000132859.8	3779	17	49210	626	7	-626	3prime_fragment	FALSE	canonical	1	27	junction_3	19.502804285538	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGATGAATGTGCCTGCCT	NA	False	NA	7	True	AATAAA	-7	NA	43759372	43784051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
ENSMUSG00000022701.19_23	chr16	+	2001	6	ISM	ENSMUSG00000022701.19	ENSMUST00000122440.2	2310	10	6600	619	6600	-619	3prime_fragment	FALSE	canonical	3	56	junction_1	14.3749782608531	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGCCTGCCTGGACTTA	4031	False	NA	14	True	AATAAA	-14	NA	43766086	43784058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
ENSMUSG00000022701.19_3	chr16	+	3053	17	NIC	ENSMUSG00000022701.19	novel	3779	17	NA	NA	10	-622	combination_of_known_junctions	FALSE	canonical	1	11	junction_1	25.4014640326104	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGCCTGCCTGGAC	NA	False	NA	11	True	AATAAA	-11	NA	43710271	43784055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_43710402_43712515_43712555_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
ENSMUSG00000022701.19_4	chr16	+	3014	16	FSM	ENSMUSG00000022701.19	ENSMUST00000178400.9	3745	16	109	622	10	-622	multi-exon	FALSE	canonical	1	27	junction_10	16.0949957716331	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGCCTGCCTGGAC	NA	False	NA	11	True	AATAAA	-11	NA	43710271	43784055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
ENSMUSG00000022701.19_7	chr16	+	4326	8	FSM	ENSMUSG00000022701.19	ENSMUST00000122014.8	1822	8	10	-2514	10	-1469	multi-exon	FALSE	canonical	3	61	junction_7	9.64682458064808	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTCTTTACCATGTCA	NA	False	NA	NA	False	AATAAA	-11	NA	43710271	43762444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276
ENSMUSG00000022701.19_9	chr16	+	1728	7	ISM	ENSMUSG00000022701.19	ENSMUST00000122014.8	1822	8	-22	7645	-22	-7645	5prime_fragment	FALSE	canonical	3	68	junction_1	8.29993306532582	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTAAATACATTTTCCC	NA	False	NA	NA	False	AATAAA	-22	NA	43710239	43752285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556
ENSMUSG00000022702.17_1	chr16	+	4041	25	FSM	ENSMUSG00000022702.17	ENSMUST00000004222.14	4218	25	171	6	-33	-6	multi-exon	TRUE	canonical	3	33	junction_15	30.9156277902725	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAACCATTTGCCTTCCC	NA	False	NA	1	True	AATAAA	-17	NA	18695986	18789053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18696270_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767_18753930_18765095_18765298_18766163_18766269_18767885_18768035_18769924_18770087_18770406_18770466_18770813_18770920_18772744_18772868_18773359_18773524_18774918_18775008_18788189
ENSMUSG00000022702.17_10	chr16	+	4171	26	NIC	ENSMUSG00000022702.17	novel	4218	25	NA	NA	-16	-3	combination_of_known_junctions	FALSE	canonical	2	15	junction_3	36.3301747862572	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATTTGCCTTCCCTGC	NA	False	NA	4	True	AATAAA	-20	NA	18696003	18789056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_18696270_18713523_18713587_18714652_18714797_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767_18753930_18765095_18765298_18766163_18766269_18767885_18768035_18769924_18770087_18770406_18770466_18770813_18770920_18772744_18772868_18773359_18773524_18774918_18775008_18788189
ENSMUSG00000022702.17_12	chr16	+	2358	13	NIC	ENSMUSG00000022702.17	novel	1911	16	NA	NA	-34	-1	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	28.1553231596127	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCTTGCTGATTATCCAG	NA	False	NA	6	True	AATAAA	-15	NA	18695985	18746760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_18696270_18713523_18713587_18715203_18715524_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187
ENSMUSG00000022702.17_3	chr16	+	2135	13	ISM	ENSMUSG00000022702.17	ENSMUST00000004222.14	4218	25	180	42303	-24	-5	5prime_fragment	FALSE	canonical	3	103	junction_2	13.4109718762909	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCATTGCTTGCTGATTAT	NA	False	NA	2	True	AATAAA	-11	NA	18695995	18746756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_18696270_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187
ENSMUSG00000022702.17_4	chr16	+	4253	25	NIC	ENSMUSG00000022702.17	novel	4218	25	NA	NA	-33	-3	combination_of_known_junctions	FALSE	canonical	3	33	junction_15	33.301547344764	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATTTGCCTTCCCTGC	NA	False	NA	4	True	AATAAA	-20	NA	18695986	18789056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_18696270_18713523_18713587_18715203_18715524_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767_18753930_18765095_18765298_18766163_18766269_18767885_18768035_18769924_18770087_18770406_18770466_18770813_18770920_18772744_18772868_18773359_18773524_18774918_18775008_18788189
ENSMUSG00000022702.17_48	chr16	+	771	1	ISM	ENSMUSG00000022702.17	ENSMUST00000004222.14	4218	25	92470	3	27990	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATTTGCCTTCCCTGC	NA	False	NA	4	True	AATAAA	-20	NA	18788285	18789056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_18788300_18789100
ENSMUSG00000022702.17_8	chr16	+	4045	26	NIC	ENSMUSG00000022702.17	novel	4218	25	NA	NA	-14	-8	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	36.1651766206112	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCAAACCATTTGCCTTC	NA	False	NA	-1	True	AATAAA	-15	NA	18696005	18789051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_18696270_18713523_18713587_18714652_18714678_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767_18753930_18765095_18765298_18766163_18766269_18767885_18768035_18769924_18770087_18770406_18770466_18770813_18770920_18772744_18772868_18773359_18773524_18774918_18775008_18788189
ENSMUSG00000022704.17_0	chr16	-	2231	4	ISM	ENSMUSG00000022704.17	ENSMUST00000239112.2	1303	8	9518	-1620	-2300	-9	3prime_fragment	FALSE	canonical	1	31	junction_3	48.3758433747901	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAAAACCCCGCTGTGC	7371	False	NA	NA	False	AATAAA	-11	NA	43692058	43681778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983
ENSMUSG00000022704.17_1	chr16	-	679	1	ISM	ENSMUSG00000022704.17	ENSMUST00000156568.8	3856	9	27555	8	5462	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAACCCCGCTGTGCA	NA	False	NA	NA	False	AATAAA	-12	NA	43682456	43681777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_43681800_43682500
ENSMUSG00000022704.17_3	chr16	-	3007	9	NIC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	2	-12	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	35.9374456521328	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAAAAAAAACCCCGCTG	NA	False	NA	NA	False	AATAAA	-8	NA	43710016	43681781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701355_43701577_43709929
ENSMUSG00000022704.17_4	chr16	-	3036	9	NIC	ENSMUSG00000022704.17	novel	1457	9	NA	NA	1	-9	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	44.3163344603319	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAAAACCCCGCTGTGC	NA	False	NA	NA	False	AATAAA	-11	NA	43710017	43681778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701330_43701577_43709929
ENSMUSG00000022706.17_2	chr16	-	751	4	FSM	ENSMUSG00000022706.17	ENSMUST00000023391.16	1280	4	326	203	3	5	multi-exon	FALSE	canonical	3	1642	junction_3	87.6711025493704	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATCTGTCTTTTGTTTTG	NA	False	NA	-19	True	AATAAA	-12	NA	18695286	18690970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18691413_18692286_18692446_18694073_18694158_18695220
ENSMUSG00000022706.17_4	chr16	-	992	4	FSM	ENSMUSG00000022706.17	ENSMUST00000119273.2	778	4	-16	-198	-16	-10	multi-exon	FALSE	canonical	3	71	junction_3	827.835061403471	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAAAAGTATCTGTCGTT	NA	False	NA	-17	True	AATAAA	-5	NA	18695305	18690777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18691413_18692286_18692446_18694073_18694187_18695220
ENSMUSG00000022707.17_0	chr16	+	2794	16	NIC	ENSMUSG00000022707.17	novel	2846	17	NA	NA	-3	-6	intron_retention	TRUE	canonical	1	5	junction_14	8.94278107376745	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCATTGACTAATGTG	NA	False	NA	NA	False	AATAAA	-13	NA	70111018	70366596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_70111184_70157745_70157916_70198621_70198738_70230432_70230559_70231401_70231538_70233815_70233907_70237997_70238208_70275193_70275310_70280708_70280837_70284915_70285015_70288821_70288933_70292115_70292288_70324004_70324190_70325767_70325899_70357911_70358030_70365876
ENSMUSG00000022708.17_1	chr16	+	2766	11	NIC	ENSMUSG00000022708.17	novel	563	8	NA	NA	-55	-266	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	4.83838816136118	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCAAACAAACAGACAAAAAG	NA	False	NA	NA	False	NA	NA	NA	42696188	43439166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_42696288_42845300_42845351_42892786_42892833_42967259_42967307_43053121_43053184_43122931_43122979_43283309_43283350_43390043_43390145_43397923_43398112_43429689_43431295_43438685
ENSMUSG00000022708.17_15	chr16	+	6027	13	NIC	ENSMUSG00000022708.17	novel	563	8	NA	NA	15	2763	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	4.14996653266291	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAAGAAAAGAAAAG	NA	False	NA	NA	False	AAAAAG	-45	NA	42696258	43442263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_42696288_42845300_42845351_42892786_42892833_42967259_42967307_43013827_43013902_43122931_43122979_43283309_43283350_43390043_43390145_43392096_43392155_43397392_43397557_43397923_43398112_43429689_43431295_43438685
ENSMUSG00000022708.17_19	chr16	+	2653	8	ISM	ENSMUSG00000022708.17	ENSMUST00000079441.13	3086	9	55282	300	55282	-300	3prime_fragment	FALSE	canonical	1	5	junction_3	2.41593350361254	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACCAAACAAAACGACAACA	NA	False	NA	NA	False	NA	NA	NA	43122928	43439132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_43122979_43283309_43283350_43390043_43390145_43392096_43392155_43397392_43397557_43397923_43398112_43429689_43431295_43438685
ENSMUSG00000022708.17_3	chr16	+	2887	12	NIC	ENSMUSG00000022708.17	novel	563	8	NA	NA	-5	-270	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	4.20546672953468	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAGCAAACAAACAGACAA	NA	False	NA	NA	False	NA	NA	NA	42696238	43439162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_42696288_42845300_42845351_42892786_42892833_43053121_43053184_43122931_43122979_43283309_43283350_43390043_43390145_43392096_43392155_43397392_43397557_43397923_43398112_43429689_43431295_43438685
ENSMUSG00000022708.17_4	chr16	+	2888	12	NIC	ENSMUSG00000022708.17	novel	563	8	NA	NA	-3	-252	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	3.84836554336668	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGCTATGGCACTAGAA	NA	False	NA	NA	False	NA	NA	NA	42696240	43439180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_42696288_42845300_42845351_42892786_42892833_42967259_42967307_43122931_43122979_43283309_43283350_43390043_43390145_43392096_43392155_43397392_43397557_43397923_43398112_43429689_43431295_43438685
ENSMUSG00000022708.17_6	chr16	+	742	1	Genic_Genomic	ENSMUSG00000022708.17	novel	NA	NA	NA	NA	67709	7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGGAAAGG	NA	False	NA	NA	False	AAAAAG	-36	NA	43398379	43399121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_+_43398400_43399100
ENSMUSG00000022708.17_8	chr16	+	2976	1	ISM	ENSMUSG00000022708.17	ENSMUST00000114694.9	26901	15	727441	4534	124785	-4534	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGCGTGTTAAAAGTTG	NA	False	NA	NA	False	ATTAAA	-17	NA	43455455	43458431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_43455500_43458400
ENSMUSG00000022708.17_9	chr16	+	2411	1	FSM	ENSMUSG00000076372.4	ENSMUST00000102417.4	83	1	-467	-1861	-467	1861	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43460550	43462961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_43460600_43463000
ENSMUSG00000022710.18_1	chr16	-	4710	32	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8925	-11	at_least_one_novel_splicesite	FALSE	canonical	2	100	junction_31	169.206103657901	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTATAATCCGATGAC	NA	False	NA	NA	False	AATAAA	-10	NA	8601247	8507474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8601193
ENSMUSG00000022710.18_3	chr16	-	5113	31	FSM	ENSMUSG00000022710.18	ENSMUST00000161046.9	4003	31	-577	-533	-499	-13	multi-exon	FALSE	canonical	2	328	junction_30	128.088897081502	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAATTATAATCCGATG	6033	False	NA	NA	False	AATAAA	-8	NA	8556783	8507476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8556067
ENSMUSG00000022710.18_4	chr16	-	4758	32	FSM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	-31	18	-31	-13	multi-exon	FALSE	canonical	2	419	junction_31	128.599831855963	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAATTATAATCCGATG	NA	False	NA	NA	False	AATAAA	-8	NA	8610203	8507476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
ENSMUSG00000022711.17_0	chr16	+	1770	9	FSM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	68	4	4	-4	multi-exon	FALSE	canonical	3	143	junction_5	22.2528088114737	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACATGATTGTGGCCGAA	NA	False	NA	13	True	AATAAA	-20	NA	8455605	8475391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
ENSMUSG00000022711.17_11	chr16	+	3979	6	NIC	ENSMUSG00000022711.17	novel	1842	9	NA	NA	-2280	-1	intron_retention	FALSE	canonical	3	143	junction_2	19.8433868076999	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGATTGTGGCCGAATCA	NA	False	NA	16	True	AATAAA	-23	NA	8461554	8475394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
ENSMUSG00000022711.17_16	chr16	+	870	1	ISM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	18987	1	8069	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGATTGTGGCCGAATCA	3739	False	NA	16	True	AATAAA	-23	NA	8474524	8475394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_8474500_8475400
ENSMUSG00000022711.17_2	chr16	+	1696	8	NIC	ENSMUSG00000022711.17	novel	1842	9	NA	NA	4	-1	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	59.2149319282333	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGATTGTGGCCGAATCA	NA	False	NA	16	True	AATAAA	-23	NA	8455605	8475394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_8455693_8460601_8460714_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
ENSMUSG00000022711.17_3	chr16	+	5015	7	NIC	ENSMUSG00000022711.17	novel	1842	9	NA	NA	7	-2	intron_retention	FALSE	canonical	3	143	junction_3	22.0636704914562	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGATTGTGGCCGAATC	NA	False	NA	15	True	AATAAA	-22	NA	8455608	8475393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_8455693_8460601_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
ENSMUSG00000022718.13_21	chr16	-	4407	12	FSM	ENSMUSG00000022718.13	ENSMUST00000115633.3	3436	12	12	-983	12	-9	multi-exon	FALSE	canonical	3	159	junction_9	19.9238218644403	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGGAATGGCTGGTTTC	NA	False	NA	-9	True	CATAAA	-8	NA	18102387	18071820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18073470_18074535_18074650_18076057_18076186_18077412_18077520_18077742_18077844_18090584_18090668_18095029_18095129_18095902_18096005_18096182_18096381_18098083_18098367_18098477_18098621_18100987
ENSMUSG00000022718.13_3	chr16	-	4286	14	FSM	ENSMUSG00000022718.13	ENSMUST00000009321.11	4320	14	25	9	10	-9	multi-exon	FALSE	canonical	3	133	junction_13	25.6660390814434	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGGAATGGCTGGTTTC	NA	False	NA	-9	True	CATAAA	-8	NA	18107085	18071820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18073470_18074535_18074650_18076057_18076186_18077412_18077520_18077742_18077844_18090584_18090668_18095029_18095129_18095902_18096005_18096182_18096381_18098083_18098367_18098477_18098621_18100987_18101148_18101560_18102561_18106966
ENSMUSG00000022718.13_4	chr16	-	3779	13	ISM	ENSMUSG00000022718.13	ENSMUST00000009321.11	4320	14	4938	9	227	-9	3prime_fragment	TRUE	canonical	3	159	junction_9	20.9528239942337	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGGAATGGCTGGTTTC	NA	False	NA	-9	True	CATAAA	-8	NA	18102172	18071820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_18073470_18074535_18074650_18076057_18076186_18077412_18077520_18077742_18077844_18090584_18090668_18095029_18095129_18095902_18096005_18096182_18096381_18098083_18098367_18098477_18098621_18100987_18101148_18101560
ENSMUSG00000022721.20_0	chr16	+	2252	12	NNC	ENSMUSG00000022721.20	novel	2367	12	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	80.6614186759067	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTCTGTGGTGAACCA	385	False	NA	4	True	AATAAA	-18	NA	18066862	18071362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_18067121_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ENSMUSG00000022721.20_2	chr16	+	2250	12	FSM	ENSMUSG00000022721.20	ENSMUST00000115640.8	2367	12	113	4	-6	0	multi-exon	FALSE	canonical	3	222	junction_1	22.0168980933485	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTCTGTGGTGAACCA	382	False	NA	4	True	AATAAA	-18	NA	18066859	18071362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ENSMUSG00000022721.20_3	chr16	+	2567	11	FSM	ENSMUSG00000022721.20	ENSMUST00000127239.8	2805	11	234	4	30	0	multi-exon	FALSE	canonical	3	250	junction_9	16.6400120192264	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTCTGTGGTGAACCA	299	False	NA	4	True	AATAAA	-18	NA	18066776	18071362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ENSMUSG00000022722.19_0	chr16	-	1299	8	FSM	ENSMUSG00000022722.19	ENSMUST00000023405.16	1696	8	14	383	14	-4	multi-exon	FALSE	canonical	3	88	junction_5	9.94064014692275	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACACCAACTAGAGTGT	NA	False	NA	NA	False	AATAAA	-6	NA	59459516	59433694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_59434208_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
ENSMUSG00000022722.19_2	chr16	-	1196	7	ISM	ENSMUSG00000022722.19	ENSMUST00000023405.16	1696	8	33	5417	-5	2853	5prime_fragment	FALSE	canonical	3	88	junction_4	10.7341614587364	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGATATCTTGTTTATTTC	NA	False	NA	NA	False	ATTAAA	-8	NA	59459497	59438728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
ENSMUSG00000022723.17_3	chr16	-	10494	22	FSM	ENSMUSG00000022723.17	ENSMUST00000172910.3	10454	22	-43	3	-43	-3	multi-exon	FALSE	canonical	1	1	junction_14	2.60559314672466	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCAGAGTCTGGGATGCC	NA	False	NA	NA	False	AATAAA	-19	NA	59421385	59312453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_59314049_59315029_59315190_59315972_59316132_59323487_59323612_59326543_59326684_59342446_59342577_59345223_59345334_59349585_59349619_59350466_59350594_59350693_59350840_59357060_59357188_59360167_59360302_59362422_59362459_59363538_59363654_59364391_59364529_59370764_59370913_59372534_59372651_59372892_59372938_59374469_59380606_59385575_59386007_59398160_59398228_59421107
ENSMUSG00000022723.17_6	chr16	-	5023	19	FSM	ENSMUSG00000022723.17	ENSMUST00000044604.16	6544	19	207	1314	207	-1	multi-exon	FALSE	canonical	1	1	junction_14	2.56519919569227	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAGTCTGGGATGCCTA	NA	False	NA	NA	False	AATAAA	-21	NA	59375908	59312451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_59314049_59315029_59315190_59315972_59316132_59323487_59323612_59326543_59326684_59342446_59342577_59345223_59345334_59349585_59349619_59350466_59350594_59350693_59350840_59357060_59357188_59360167_59360302_59362422_59362459_59363538_59363654_59364391_59364529_59370764_59370913_59372534_59372651_59372892_59372938_59374469
ENSMUSG00000022724.16_0	chr16	+	1957	10	FSM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	28	174	-1	-4	multi-exon	FALSE	canonical	3	227	junction_9	29.2042614850793	335	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAATGAAAATATACATATC	NA	False	NA	NA	False	AATAAA	-18	NA	59292165	59312650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
ENSMUSG00000022738.8_0	chr16	-	1113	3	FSM	ENSMUSG00000022738.8	ENSMUST00000012279.6	1172	3	52	7	52	-7	multi-exon	FALSE	canonical	3	24	junction_2	2.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAACAGTCCAGGATTTC	NA	False	NA	NA	False	AATAAA	-18	NA	17732871	17730977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17731583_17732229_17732484_17732617
ENSMUSG00000022742.7_0	chr16	+	3039	7	FSM	ENSMUSG00000022742.7	ENSMUST00000060077.7	3097	7	51	7	15	-7	multi-exon	FALSE	canonical	3	129	junction_2	26.4916129285394	311	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAAGAAAAGTATTTGT	NA	False	NA	NA	False	AATAAA	-10	NA	58490705	58500742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_58491314_58492890_58493035_58493698_58493810_58494742_58494885_58495604_58495824_58498307_58498413_58499032
ENSMUSG00000022744.13_0	chr16	+	2004	5	FSM	ENSMUSG00000022744.13	ENSMUST00000023426.12	2147	5	114	29	1	-29	multi-exon	FALSE	canonical	3	351	junction_1	33.101170674162	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAATCATGTAGA	NA	False	NA	-5	True	AATAAA	-2	NA	58548386	58554585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201
ENSMUSG00000022744.13_13	chr16	+	1932	4	ISM	ENSMUSG00000022744.13	ENSMUST00000023426.12	2147	5	1527	41	1389	-41	3prime_fragment	FALSE	canonical	3	371	junction_3	31.3723161756065	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAATAAAAAAGA	NA	False	NA	-17	True	AAAAAG	-45	NA	58549799	58554573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_58550111_58551664_58551776_58552943_58553082_58553201
ENSMUSG00000022744.13_4	chr16	+	2054	6	NIC	ENSMUSG00000022744.13	novel	1540	6	NA	NA	-5	-29	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	183.063486255452	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAATCATGTAGA	NA	False	NA	-5	True	AATAAA	-2	NA	58548380	58554585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_58548448_58549542_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201
ENSMUSG00000022747.18_0	chr16	-	2398	11	FSM	ENSMUSG00000022747.18	ENSMUST00000137035.8	4123	11	98	1627	16	1	multi-exon	FALSE	canonical	1	1	junction_6	1.74355957741627	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTTAAGAGTTGAGCT	NA	False	NA	NA	False	AGTAAA	-12	NA	58343691	58290114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_58291091_58292673_58292827_58293771_58293910_58294016_58294204_58296212_58296309_58305125_58305190_58306757_58306862_58309266_58309345_58314042_58314225_58327810_58327978_58343438
ENSMUSG00000022747.18_1	chr16	-	1404	11	ISM	ENSMUSG00000022747.18	ENSMUST00000114357.10	1918	12	630	335	-2	-335	3prime_fragment	FALSE	canonical	1	1	junction_6	1.78885438199983	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATTATGTGTATTAAG	NA	False	NA	NA	False	AATATA	-13	NA	58343918	58290909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_58291091_58292673_58292827_58293771_58293910_58294016_58294204_58296212_58296309_58305125_58305190_58306757_58306862_58309266_58309345_58314042_58314225_58327810_58327978_58343864
ENSMUSG00000022748.9_7	chr16	-	495	2	FSM	ENSMUSG00000022748.9	ENSMUST00000232413.2	529	2	29	5	11	-5	multi-exon	FALSE	canonical	3	94	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAGATTATTTATGTTTT	NA	False	NA	-6	True	AATAAA	-12	NA	57427198	57381800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_57382126_57427028
ENSMUSG00000022748.9_8	chr16	-	1127	10	NNC	ENSMUSG00000022748.9	novel	1150	10	NA	NA	10	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	76.7556649294723	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTCTTGTTGAGCAGAC	NA	False	NA	-25	True	AATAAA	-16	NA	57427199	57122378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826_57143910_57427028
ENSMUSG00000022748.9_9	chr16	-	1131	10	NNC	ENSMUSG00000022748.9	novel	1150	10	NA	NA	12	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	76.7556649294723	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAGACAGTTTCTCTTT	NA	False	NA	-14	True	AATAAA	-27	NA	57427197	57122367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826_57143905_57427028
ENSMUSG00000022749.9_0	chr16	-	3574	18	FSM	ENSMUSG00000022749.9	ENSMUST00000023431.8	3690	18	112	4	-19	-4	multi-exon	FALSE	canonical	3	134	junction_12	18.4520326427881	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTCTGCCCTGGAGGA	NA	False	NA	-8	True	AATAAA	-18	NA	57051755	56989228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032939_57034526_57034633_57038671_57038784_57051676
ENSMUSG00000022749.9_7	chr16	-	3487	18	NIC	ENSMUSG00000022749.9	novel	3690	18	NA	NA	-17	-4	combination_of_known_junctions	TRUE	canonical	3	26	junction_15	37.195732165794	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTCTGCCCTGGAGGA	NA	False	NA	-8	True	AATAAA	-18	NA	57051753	56989228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032854_57034526_57034633_57038671_57038784_57051676
ENSMUSG00000022750.19_1	chr16	+	2560	7	NIC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	-2	-6	combination_of_known_junctions	FALSE	canonical	3	178	junction_1	113.988912716203	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAATGTGGCTACAGTCT	NA	False	NA	13	True	AATAAA	-22	NA	17577524	17611240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ENSMUSG00000022750.19_12	chr16	+	3107	7	NNC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	149.069335098358	183	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAATGTGGCTACAGTCT	NA	False	NA	13	True	AATAAA	-22	NA	17577537	17611240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_17578119_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ENSMUSG00000022750.19_13	chr16	+	3204	7	NIC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	-4	-6	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	164.993350034344	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAATGTGGCTACAGTCT	NA	False	NA	13	True	AATAAA	-22	NA	17577536	17611240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_17578215_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ENSMUSG00000022750.19_33	chr16	+	2532	6	ISM	ENSMUSG00000022750.19	ENSMUST00000120488.3	2596	7	1590	3	288	-3	3prime_fragment	FALSE	canonical	3	453	junction_5	19.2707031527134	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGGCTACAGTCTGAG	1057	False	NA	16	True	AATAAA	-25	NA	17582244	17611243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ENSMUSG00000022750.19_4	chr16	+	2565	7	FSM	ENSMUSG00000022750.19	ENSMUST00000165790.9	2544	7	-6	-15	-6	-3	multi-exon	FALSE	canonical	0	0	junction_1	179.822520527572	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGGCTACAGTCTGAG	NA	False	NA	16	True	AATAAA	-25	NA	17577534	17611243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17577571_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ENSMUSG00000022750.19_43	chr16	+	1718	4	ISM	ENSMUSG00000022750.19	ENSMUST00000120488.3	2596	7	13990	6	12688	-6	3prime_fragment	FALSE	canonical	3	453	junction_3	24.1798814444295	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAATGTGGCTACAGTCT	NA	False	NA	13	True	AATAAA	-22	NA	17594644	17611240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_17594985_17602066_17602260_17607000_17607235_17610289
ENSMUSG00000022750.19_6	chr16	+	3078	4	FSM	ENSMUSG00000022750.19	ENSMUST00000144116.2	3266	4	-2	190	-2	-190	multi-exon	FALSE	canonical	3	178	junction_1	142.007824510561	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTAATTAGTTGATAAAG	NA	False	NA	NA	False	TATAAA	-7	NA	17577524	17596880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265
ENSMUSG00000022751.10_0	chr16	-	1061	10	FSM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	-18	243	-9	-103	multi-exon	TRUE	canonical	3	674	junction_8	39.9499687108764	354	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTGCTTGGTAACAAT	NA	False	NA	-32	True	ATTAAA	-17	NA	56987713	56977270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
ENSMUSG00000022752.10_0	chr16	+	3763	12	FSM	ENSMUSG00000022752.10	ENSMUST00000166897.3	5964	12	20	2181	20	-1361	multi-exon	FALSE	canonical	3	1304	junction_5	122.457278770872	2795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCAAGCTTTTCTATCC	NA	False	NA	21	True	AATAAA	-5	NA	56942085	56974887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_56942558_56953439_56953614_56955015_56955143_56957060_56957171_56958392_56958542_56960941_56961150_56963083_56963219_56965053_56965162_56966392_56966510_56968095_56968194_56970182_56970306_56972945
ENSMUSG00000022752.10_56	chr16	+	1417	1	ISM	ENSMUSG00000022752.10	ENSMUST00000166897.3	5964	12	31411	2175	-146	-1355	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTTTCTATCCATTTTT	NA	False	NA	27	True	AATAAA	-11	NA	56973476	56974893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_56973500_56974900
ENSMUSG00000022753.16_0	chr16	-	176	1	ISM	ENSMUSG00000022753.16	ENSMUST00000023434.15	2973	7	1159	25107	1159	-22208	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAGAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	57112055	57111879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_57111900_57112100
ENSMUSG00000022754.7_1	chr16	-	1571	6	FSM	ENSMUSG00000022754.7	ENSMUST00000023435.6	2701	6	15	1115	15	214	multi-exon	FALSE	canonical	1	3	junction_5	1.32664991614216	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACCAAAAATCCTCATT	6317	False	NA	NA	False	AATAAA	-22	NA	56706514	56626638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_56627140_56631888_56632035_56642587_56642773_56643750_56643958_56646028_56646222_56706175
ENSMUSG00000022756.18_0	chr16	-	2413	6	NIC	ENSMUSG00000022756.18	novel	1920	7	NA	NA	4	-2	intron_retention	FALSE	canonical	1	1	junction_4	6.71118469422501	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTCATGTACACTGTGG	NA	False	NA	NA	False	NA	NA	NA	17394531	17390821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815_17393833_17393944_17394068_17394503
ENSMUSG00000022756.18_2	chr16	-	2287	5	FSM	ENSMUSG00000022756.18	ENSMUST00000172164.10	3281	5	54	940	4	-2	multi-exon	FALSE	canonical	3	3	junction_4	5.33853912601566	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTCATGTACACTGTGG	NA	False	NA	NA	False	NA	NA	NA	17394531	17390821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815_17393830_17394503
ENSMUSG00000022756.18_4	chr16	-	2099	4	ISM	ENSMUSG00000022756.18	ENSMUST00000232385.2	1714	6	890	11	412	-1	intron_retention	FALSE	canonical	3	13	junction_2	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCTGTCATGTACACTG	NA	False	NA	NA	False	NA	NA	NA	17393672	17390824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815
ENSMUSG00000022756.18_6	chr16	-	2285	5	NIC	ENSMUSG00000022756.18	novel	1714	6	NA	NA	-4	1	intron_retention	FALSE	canonical	1	2	junction_4	5.76085931090146	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATGTACACTGTGGTAT	NA	False	NA	NA	False	NA	NA	NA	17394523	17390818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815_17393833_17394503
ENSMUSG00000022756.18_7	chr16	-	2695	5	NIC	ENSMUSG00000022756.18	novel	2577	4	NA	NA	0	-1	intron_retention	FALSE	canonical	1	1	junction_3	7.25861557047899	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCTGTCATGTACACTG	NA	False	NA	NA	False	NA	NA	NA	17394535	17390824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17391317_17391419_17392451_17392815_17393833_17393944_17394068_17394503
ENSMUSG00000022757.20_0	chr16	-	1809	8	FSM	ENSMUSG00000022757.20	ENSMUST00000065515.14	1945	8	133	3	-6	-3	multi-exon	FALSE	canonical	3	474	junction_2	54.3950027716757	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGTGGTCTTGTTGCCT	NA	False	NA	-3	True	AATAAA	-13	NA	56537680	56510697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_56511517_56514762_56514853_56517821_56517960_56521431_56521600_56524789_56524937_56525973_56526058_56532973_56533204_56537547
ENSMUSG00000022757.20_2	chr16	-	1775	8	NNC	ENSMUSG00000022757.20	novel	1945	8	NA	NA	15	-4	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_2	169.645368402465	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAACTGTGGTCTTGTTGCC	NA	False	NA	-4	True	AATAAA	-12	NA	56537659	56510698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_56511517_56514762_56514853_56517833_56517960_56521431_56521600_56524789_56524937_56525973_56526058_56532973_56533204_56537547
ENSMUSG00000022760.18_0	chr16	-	1073	5	FSM	ENSMUSG00000022760.18	ENSMUST00000100125.12	1248	5	72	103	-9	-7	multi-exon	FALSE	canonical	3	43	junction_4	27.8118679703468	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGACTGCTGTTTGGCT	7258	False	NA	-6	True	AATAAA	-12	NA	17348928	17345948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348888
ENSMUSG00000022760.18_1	chr16	-	1286	3	ISM	ENSMUSG00000022760.18	ENSMUST00000231424.2	895	4	73	-166	34	-7	intron_retention	FALSE	canonical	3	101	junction_1	8.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGACTGCTGTTTGGCT	7604	False	NA	-6	True	AATAAA	-12	NA	17348582	17345948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_17346605_17346798_17346940_17348093
ENSMUSG00000022760.18_11	chr16	-	2963	1	NIC	ENSMUSG00000022760.18	novel	1248	5	NA	NA	0	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGACTGCTGTTTGGCT	7275	False	NA	-6	True	AATAAA	-12	NA	17348911	17345948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17345900_17348900
ENSMUSG00000022760.18_14	chr16	-	1453	4	NIC	ENSMUSG00000022760.18	novel	1120	5	NA	NA	1	-9	intron_retention	FALSE	canonical	3	43	junction_3	32.1074584619974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGAGACTGCTGTTTGG	7268	False	NA	-8	True	AATAAA	-10	NA	17348918	17345950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17346605_17346798_17346940_17348093_17348722_17348888
ENSMUSG00000022760.18_17	chr16	-	885	2	FSM	ENSMUSG00000022760.18	ENSMUST00000232041.2	766	2	44	-163	30	-9	multi-exon	FALSE	canonical	3	19	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGAGACTGCTGTTTGG	7314	False	NA	-8	True	AATAAA	-10	NA	17348872	17345950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17346605_17348641
ENSMUSG00000022760.18_18	chr16	-	1589	3	NIC	ENSMUSG00000022760.18	novel	734	4	NA	NA	5	418	intron_retention	FALSE	canonical	2	5	junction_1	40.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTTTCCCTGCTGTTCCT	7289	False	NA	NA	False	NA	NA	NA	17348897	17345427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17346605_17348093_17348250_17348641
ENSMUSG00000022760.18_19	chr16	-	1011	4	FSM	ENSMUSG00000022760.18	ENSMUST00000231424.2	895	4	48	-164	9	-9	multi-exon	FALSE	canonical	3	18	junction_3	43.6882898116494	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGAGACTGCTGTTTGG	7579	False	NA	-8	True	AATAAA	-10	NA	17348607	17345950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348547
ENSMUSG00000022760.18_2	chr16	-	2778	2	FSM	ENSMUSG00000022760.18	ENSMUST00000231699.2	454	2	-1904	-420	0	-3	multi-exon	FALSE	canonical	3	101	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTGCTGTTTGGCTTGGC	7270	False	NA	-2	True	AATAAA	-16	NA	17348916	17345944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17346605_17346798
ENSMUSG00000022760.18_3	chr16	-	778	2	NIC	ENSMUSG00000022760.18	novel	1248	5	NA	NA	2	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAAATCTCTGTTTGCA	7277	False	NA	95	True	NA	NA	NA	17348909	17345847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17346605_17348888
ENSMUSG00000022760.18_4	chr16	-	1120	5	FSM	ENSMUSG00000022760.18	ENSMUST00000231548.2	1110	5	-17	7	-9	-7	multi-exon	FALSE	canonical	3	10	junction_4	41.2757495389242	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGACTGCTGTTTGGCT	7258	False	NA	-6	True	AATAAA	-12	NA	17348928	17345948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348841
ENSMUSG00000022760.18_5	chr16	-	2872	2	NIC	ENSMUSG00000022760.18	novel	1248	5	NA	NA	-5	-1	intron_retention	FALSE	canonical	3	43	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTTTGGCTTGGCTG	7205	False	NA	0	True	AATAAA	-18	NA	17348981	17345942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17348722_17348888
ENSMUSG00000022760.18_7	chr16	-	1215	4	FSM	ENSMUSG00000022760.18	ENSMUST00000231288.2	734	4	16	-497	-1	-7	multi-exon	FALSE	canonical	3	86	junction_3	13.0724477007517	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGACTGCTGTTTGGCT	7283	False	NA	-6	True	AATAAA	-12	NA	17348903	17345948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641
ENSMUSG00000022760.18_8	chr16	-	1089	5	NIC	ENSMUSG00000022760.18	novel	1248	5	NA	NA	-11	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	51.0067397507427	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGACTGCTGTTTGGCT	7256	False	NA	-6	True	AATAAA	-12	NA	17348930	17345948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17346605_17346798_17346940_17348093_17348250_17348547_17348642_17348888
ENSMUSG00000022760.18_9	chr16	-	1069	3	NIC	ENSMUSG00000022760.18	novel	734	4	NA	NA	1	-9	intron_retention	FALSE	canonical	3	9	junction_2	46	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGAGACTGCTGTTTGG	7271	False	NA	-8	True	AATAAA	-10	NA	17348915	17345950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_17346605_17346798_17346940_17348641
ENSMUSG00000022761.13_0	chr16	+	3084	21	FSM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	284	26	-1	-24	multi-exon	FALSE	canonical	2	77	junction_5	14.8690113995518	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGAACAGCCCTCTCAAT	NA	False	NA	6	True	NA	NA	NA	17326835	17344171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
ENSMUSG00000022763.19_0	chr16	+	2689	21	FSM	ENSMUSG00000022763.19	ENSMUST00000023448.15	2688	21	-8	7	-8	-3	multi-exon	FALSE	canonical	1	3	junction_11	2.45916652547159	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAACTGTGTCCTAGTG	4240	False	NA	NA	False	ATTAAA	-12	NA	17307518	17325342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17307756_17309156_17309348_17309784_17309968_17317411_17317626_17317864_17317975_17318152_17318263_17318353_17318399_17318610_17318708_17318789_17318903_17319316_17319404_17319954_17320047_17320129_17320261_17320359_17320476_17320576_17320649_17320757_17320822_17321329_17321407_17321507_17321626_17322781_17322881_17323547_17323624_17324093_17324199_17324990
ENSMUSG00000022765.11_0	chr16	+	1898	5	FSM	ENSMUSG00000022765.11	ENSMUST00000023449.11	3447	5	44	1505	44	-1505	multi-exon	FALSE	canonical	3	88	junction_2	7.59522876548166	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCACAGAACACCTGACTA	1428	False	NA	NA	False	AATAAA	-9	NA	17223893	17247186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17224224_17237127_17237325_17240329_17240416_17244900_17245006_17246006
ENSMUSG00000022765.11_2	chr16	+	2650	1	ISM	ENSMUSG00000022765.11	ENSMUST00000023449.11	3447	5	22175	17	22175	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATCTACTT	NA	False	NA	NA	False	TATAAA	-36	NA	17246024	17248674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_17246000_17248700
ENSMUSG00000022768.18_1	chr16	-	4719	3	FSM	ENSMUSG00000022768.18	ENSMUST00000115711.10	2103	3	-2616	0	216	0	multi-exon	FALSE	canonical	1	1	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-18	NA	16964877	16958899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16960067_16960194_16960744_16961874
ENSMUSG00000022769.10_0	chr16	-	1062	3	FSM	ENSMUSG00000022769.10	ENSMUST00000023453.10	1108	3	43	3	43	-3	multi-exon	FALSE	canonical	2	125	junction_1	37.5	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGTGAGTGCATGAGAT	NA	False	NA	-13	True	AATAAA	-15	NA	16950204	16948004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16948653_16949460_16949658_16949987
ENSMUSG00000022769.10_1	chr16	-	813	2	ISM	ENSMUSG00000022769.10	ENSMUST00000023453.10	1108	3	623	2	623	-2	3prime_fragment	FALSE	canonical	2	125	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTGAGTGCATGAGATG	NA	False	NA	-12	True	AATAAA	-16	NA	16949624	16948003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_16948653_16949460
ENSMUSG00000022770.18_10	chr16	+	4663	25	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	-2	-4	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	72.0681462806789	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCCATATGTTAAATGT	NA	False	NA	12	True	AATAAA	-10	NA	31482750	31692160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665654_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ENSMUSG00000022770.18_105	chr16	+	1227	1	ISM	ENSMUSG00000022770.18	ENSMUST00000115205.9	6143	26	208678	1782	4639	1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATATGTTAAATGTGTCTT	NA	False	NA	17	True	AATAAA	-15	NA	31690938	31692165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_31690900_31692200
ENSMUSG00000022770.18_17	chr16	+	4704	26	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	-9	-4	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	76.3517753559143	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCCATATGTTAAATGT	NA	False	NA	12	True	AATAAA	-10	NA	31482763	31692160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31590574_31590674_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615784_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665654_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ENSMUSG00000022770.18_26	chr16	+	4602	25	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	-6	-4	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	76.7834142789531	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCCATATGTTAAATGT	NA	False	NA	12	True	AATAAA	-10	NA	31482766	31692160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615784_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665654_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ENSMUSG00000022770.18_3	chr16	+	4608	25	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	-9	-4	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	72.3319772338318	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCCATATGTTAAATGT	NA	False	NA	12	True	AATAAA	-10	NA	31482763	31692160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615784_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ENSMUSG00000022770.18_4	chr16	+	4654	25	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	10	-4	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	67.2157466463196	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCCATATGTTAAATGT	NA	False	NA	12	True	AATAAA	-10	NA	31482762	31692160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ENSMUSG00000022770.18_5	chr16	+	4769	26	FSM	ENSMUSG00000022770.18	ENSMUST00000064477.14	4663	26	-110	4	-6	-4	multi-exon	FALSE	canonical	1	100	junction_1	67.3545841053154	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCCATATGTTAAATGT	NA	False	NA	12	True	AATAAA	-10	NA	31482746	31692160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31590574_31590674_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ENSMUSG00000022770.18_7	chr16	+	4707	26	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	-9	-4	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	72.1576052817719	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCCATATGTTAAATGT	NA	False	NA	12	True	AATAAA	-10	NA	31482763	31692160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31590574_31590674_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615784_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ENSMUSG00000022770.18_9	chr16	+	4752	26	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	8	-4	combination_of_known_junctions	FALSE	canonical	1	100	junction_1	71.9072291219735	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCCATATGTTAAATGT	NA	False	NA	12	True	AATAAA	-10	NA	31482760	31692160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31590574_31590674_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665654_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
ENSMUSG00000022771.18_30	chr16	-	1740	20	FSM	ENSMUSG00000022771.18	ENSMUST00000231712.2	3088	20	11	1337	1	-2	multi-exon	FALSE	canonical	3	631	junction_7	49.1072657119735	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACCTGGGTCCAGTTTGA	NA	False	NA	-37	True	AATAAA	-11	NA	16929095	16906516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ENSMUSG00000022771.18_5	chr16	-	2178	21	FSM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	26	129	1	-128	multi-exon	FALSE	canonical	3	214	junction_1	124.441592725262	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAAAATCTCATTTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	16929095	16904547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ENSMUSG00000022772.13_0	chr16	-	6196	10	FSM	ENSMUSG00000022772.13	ENSMUST00000231360.2	6332	10	131	5	7	-5	multi-exon	FALSE	canonical	3	47	junction_4	8.64670064815276	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACATGTGTTCTGTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	31821974	31778494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31782356_31783087_31783139_31784562_31784647_31787617_31787756_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757_31809284_31821809
ENSMUSG00000022772.13_1	chr16	-	5148	9	ISM	ENSMUSG00000022772.13	ENSMUST00000231360.2	6332	10	13707	3	-403	-3	3prime_fragment	FALSE	canonical	3	47	junction_4	8.35071104756954	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTGTTCTGTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	31808398	31778492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_31782356_31783087_31783139_31784562_31784647_31787617_31787756_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757
ENSMUSG00000022772.13_13	chr16	-	2282	7	NIC	ENSMUSG00000022772.13	novel	2804	6	NA	NA	1	6	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	18.8826787176914	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTTTTTAATTTTTATT	NA	False	NA	NA	False	ATTAAA	-21	NA	31821980	31794633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_31794848_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757_31809284_31821809
ENSMUSG00000022772.13_18	chr16	-	3802	2	ISM	ENSMUSG00000022772.13	ENSMUST00000144320.2	2804	6	19	9872	4	-9872	5prime_fragment	FALSE	canonical	3	70	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTTGTGCAAGTCTGT	NA	False	NA	-2	True	AATAAA	-15	NA	31821977	31805649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_31809284_31821809
ENSMUSG00000022772.13_3	chr16	-	4667	9	NIC	ENSMUSG00000022772.13	novel	6332	10	NA	NA	10	-5	combination_of_known_splicesites	FALSE	canonical	2	4	junction_8	20.0234237831596	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACATGTGTTCTGTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	31821971	31778494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_31782356_31783087_31783139_31784562_31784647_31787617_31787756_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31821809
ENSMUSG00000022772.13_4	chr16	-	2850	1	ISM	ENSMUSG00000022772.13	ENSMUST00000231360.2	6332	10	40763	3	26653	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTGTTCTGTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	31781342	31778492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_31778500_31781300
ENSMUSG00000022772.13_6	chr16	-	6197	10	FSM	ENSMUSG00000022772.13	ENSMUST00000023457.13	3370	10	3	-2830	3	-4	multi-exon	FALSE	canonical	3	6	junction_9	18.3168275866621	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACATGTGTTCTGTTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	31821978	31778493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31782356_31783087_31783139_31784562_31784647_31787617_31787756_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757_31809284_31821813
ENSMUSG00000022773.20_0	chr16	+	2441	5	FSM	ENSMUSG00000022773.20	ENSMUST00000035682.16	3322	5	480	401	18	-6	multi-exon	FALSE	canonical	0	0	junction_2	19.0705925445435	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTTTTTTGGATTTTGC	NA	False	NA	NA	False	TATAAA	-14	NA	16888039	16904199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16888228_16895638_16895919_16899461_16899506_16899931_16900041_16902379
ENSMUSG00000022773.20_4	chr16	+	1024	6	NIC	ENSMUSG00000022773.20	novel	694	5	NA	NA	10	182	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	21.8942914934464	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCGTTTTTGGAAGTCTG	NA	False	NA	NA	False	NA	NA	NA	16888031	16902648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_16888228_16892490_16892617_16895638_16895919_16899461_16899506_16899931_16900041_16902379
ENSMUSG00000022773.20_8	chr16	+	603	4	FSM	ENSMUSG00000022773.20	ENSMUST00000239090.2	459	4	21	-165	21	165	multi-exon	FALSE	canonical	0	0	junction_1	22.0151463012778	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCCCTGTCGTGTACAAT	NA	False	NA	NA	False	NA	NA	NA	16895720	16902631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16895919_16899461_16899506_16899931_16900041_16902379
ENSMUSG00000022773.20_9	chr16	+	2212	4	FSM	ENSMUSG00000022773.20	ENSMUST00000231518.2	2185	4	-25	-2	-25	2	multi-exon	FALSE	canonical	3	5	junction_1	19.6694913225759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGATTTTGCGTTGGCCT	NA	False	NA	NA	False	TATAAA	-22	NA	16887996	16904207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16888228_16899461_16899506_16899931_16900041_16902379
ENSMUSG00000022774.14_0	chr16	+	1696	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	83	291	-5	-291	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCATCGGAGTCTCGCT	NA	False	NA	NA	False	AATAAA	-18	NA	31767413	31776999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
ENSMUSG00000022774.14_6	chr16	+	1166	1	ISM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	8504	290	8371	-290	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATCGGAGTCTCGCTA	NA	False	NA	NA	False	AATAAA	-19	NA	31775834	31777000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_31775800_31777000
ENSMUSG00000022779.17_1	chr16	+	2851	18	NIC	ENSMUSG00000022779.17	novel	2950	19	NA	NA	3	-2	combination_of_known_junctions	TRUE	canonical	3	287	junction_1	39.4304608859032	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAGAGCCTGGGACCT	NA	False	NA	NA	False	ATTAAA	-25	NA	16688633	16710847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUSG00000022779.17_101	chr16	+	380	1	ISM	ENSMUSG00000022779.17	ENSMUST00000232581.2	2950	19	21847	2	1102	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAGAGCCTGGGACCT	NA	False	NA	NA	False	ATTAAA	-25	NA	16710467	16710847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_16710500_16710800
ENSMUSG00000022779.17_2	chr16	+	2935	19	FSM	ENSMUSG00000022779.17	ENSMUST00000232581.2	2950	19	13	2	3	-2	multi-exon	FALSE	canonical	3	71	junction_1	102.489023802552	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAGAGCCTGGGACCT	NA	False	NA	NA	False	ATTAAA	-25	NA	16688633	16710847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16688694_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUSG00000022779.17_63	chr16	+	2923	18	FSM	ENSMUSG00000022779.17	ENSMUST00000023465.16	3073	18	143	7	-41	-2	multi-exon	FALSE	canonical	3	41	junction_1	94.325542449951	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAGAGCCTGGGACCT	NA	False	NA	NA	False	ATTAAA	-25	NA	16688787	16710847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16688920_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUSG00000022779.17_69	chr16	+	2976	19	NIC	ENSMUSG00000022779.17	novel	3073	18	NA	NA	-10	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	112.156209957803	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAGAGCCTGGGACCT	NA	False	NA	NA	False	ATTAAA	-25	NA	16688818	16710847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_16688920_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUSG00000022779.17_7	chr16	+	2938	19	NIC	ENSMUSG00000022779.17	novel	2950	19	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	108.44980917969	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAGAGCCTGGGACCT	NA	False	NA	NA	False	ATTAAA	-25	NA	16688633	16710847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_16688694_16692932_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUSG00000022780.6_0	chr16	+	3562	16	FSM	ENSMUSG00000022780.6	ENSMUST00000023464.6	4133	16	49	522	49	-522	multi-exon	FALSE	canonical	1	2	junction_8	1.29957257930786	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGAAACAGGAGCAAACA	1774	False	NA	NA	False	AATAAA	-9	NA	31697676	31717316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_31697794_31698940_31699096_31700685_31700786_31702578_31702762_31703761_31703919_31705017_31705086_31706229_31706418_31706927_31707109_31707695_31707848_31709533_31709631_31710384_31710580_31711303_31711461_31711557_31711626_31713508_31713697_31715246_31715446_31715959
ENSMUSG00000022780.6_2	chr16	+	3650	12	ISM	ENSMUSG00000022780.6	ENSMUST00000023464.6	4133	16	6010	3	6010	-3	3prime_fragment	FALSE	canonical	1	2	junction_4	1.43739893644017	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTCTGCCACCTGACT	7735	False	NA	NA	False	AATAAA	-42	NA	31703637	31717835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_31703919_31705017_31705086_31706229_31706418_31706927_31707109_31707695_31707848_31709533_31709631_31710384_31710580_31711303_31711461_31711557_31711626_31713508_31713697_31715246_31715446_31715959
ENSMUSG00000022780.6_3	chr16	+	3603	8	NIC	ENSMUSG00000022780.6	novel	4133	16	NA	NA	9397	-3	intron_retention	FALSE	canonical	2	3	junction_2	1.24539969815448	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTCTGCCACCTGACT	NA	False	NA	NA	False	AATAAA	-42	NA	31707024	31717835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_31707848_31709533_31709631_31710384_31710580_31711303_31711461_31711557_31711626_31713508_31713697_31715246_31715446_31715959
ENSMUSG00000022781.9_2	chr16	-	2732	1	ISM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	60311	10	24969	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCTTTTCTTAAATTTC	NA	False	NA	-20	True	AATAAA	-12	NA	31837849	31835117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_31835100_31837800
ENSMUSG00000022781.9_3	chr16	-	4137	15	FSM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	23	1581	23	-1581	multi-exon	FALSE	canonical	3	184	junction_8	23.9404021925877	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACAATTGTATGAATTG	NA	False	NA	-6	True	ATTAAA	-18	NA	31898137	31836688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31839085_31840591_31840730_31841906_31842104_31846529_31846630_31850401_31850520_31852604_31852718_31853712_31853762_31856062_31856127_31858616_31858750_31860285_31860394_31861963_31861996_31862670_31862819_31863298_31863400_31870993_31871202_31897905
ENSMUSG00000022783.12_0	chr16	-	2406	11	FSM	ENSMUSG00000022783.12	ENSMUST00000023468.6	2416	11	0	10	0	-10	multi-exon	FALSE	canonical	1	1	junction_3	2.24722050542442	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCAGCATTAGAATGGT	NA	False	NA	NA	False	AATAAA	-6	NA	16647177	16570889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16571742_16580885_16581032_16584832_16584950_16595186_16595379_16598484_16598638_16599608_16599783_16601598_16601805_16605078_16605263_16610360_16610528_16646883_16646980_16647058
ENSMUSG00000022787.11_0	chr16	+	1137	3	FSM	ENSMUSG00000022787.11	ENSMUST00000178573.8	1153	3	16	0	-10	0	multi-exon	FALSE	canonical	3	50	junction_1	36.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCAACAGTAATTTTG	NA	False	NA	9	True	AATAAA	-10	NA	32066060	32075892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32066086_32070640_32071137_32075276
ENSMUSG00000022787.11_1	chr16	+	5278	2	ISM	ENSMUSG00000022787.11	ENSMUST00000178573.8	1153	3	15	0	-11	0	intron_retention	FALSE	canonical	3	50	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCAACAGTAATTTTG	NA	False	NA	9	True	AATAAA	-10	NA	32066059	32075892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32066086_32070640
ENSMUSG00000022787.11_2	chr16	+	1379	3	FSM	ENSMUSG00000022787.11	ENSMUST00000023474.4	1394	3	6	9	6	0	multi-exon	FALSE	canonical	3	19	junction_1	52	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCAACAGTAATTTTG	NA	False	NA	9	True	AATAAA	-10	NA	32066076	32075892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32066344_32070640_32071137_32075276
ENSMUSG00000022787.11_4	chr16	+	595	2	ISM	ENSMUSG00000022787.11	ENSMUST00000023474.4	1394	3	4	4935	4	-12	5prime_fragment	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGAAAGTCTGCTGGCT	NA	False	NA	NA	False	ATTAAA	-3	NA	32066074	32070966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32066344_32070640
ENSMUSG00000022787.11_5	chr16	+	1115	2	ISM	ENSMUSG00000022787.11	ENSMUST00000023474.4	1394	3	4567	9	4419	0	3prime_fragment	FALSE	canonical	3	123	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCAACAGTAATTTTG	NA	False	NA	9	True	AATAAA	-10	NA	32070637	32075892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32071137_32075276
ENSMUSG00000022787.11_6	chr16	+	473	1	ISM	ENSMUSG00000022787.11	ENSMUST00000178573.8	1153	3	9375	0	9201	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCAACAGTAATTTTG	NA	False	NA	9	True	AATAAA	-10	NA	32075419	32075892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32075400_32075900
ENSMUSG00000022788.17_0	chr16	-	3358	17	FSM	ENSMUSG00000022788.17	ENSMUST00000162671.8	2714	17	-64	-580	-3	580	multi-exon	FALSE	canonical	2	6	junction_7	4.09219913371771	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAATTTGCCTGTATAT	NA	False	NA	NA	False	AATAAA	-14	NA	16417906	16239846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16240685_16241779_16241921_16243630_16243772_16253804_16253931_16254396_16254490_16254873_16254905_16271855_16272029_16279457_16279605_16279864_16279924_16287567_16287707_16292090_16292248_16292879_16293026_16295287_16295378_16301953_16302462_16308286_16308471_16321960_16322081_16417641
ENSMUSG00000022788.17_2	chr16	-	3245	17	FSM	ENSMUSG00000022788.17	ENSMUST00000069284.14	2637	17	4	-612	4	573	multi-exon	FALSE	canonical	2	6	junction_7	4.02919036532155	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATACAAATCAATTTGCC	NA	False	NA	NA	False	AATAAA	-7	NA	16345271	16239853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16240685_16241779_16241921_16243630_16243772_16253804_16253931_16254396_16254490_16254873_16254905_16271855_16272029_16279457_16279605_16279864_16279924_16287567_16287707_16292090_16292248_16292879_16293026_16295287_16295378_16301953_16302462_16308286_16308471_16321960_16322081_16345112
ENSMUSG00000022788.17_3	chr16	-	3090	1	ISM	ENSMUSG00000022788.17	ENSMUST00000161861.8	8342	17	140213	0	84216	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGAGCCTTGGCTGTTA	NA	False	NA	NA	False	AATAAA	-17	NA	16237870	16234780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_16234800_16237900
ENSMUSG00000022788.17_7	chr16	-	6283	4	ISM	ENSMUSG00000022788.17	ENSMUST00000069284.14	2637	17	91379	-5690	68190	5	3prime_fragment	TRUE	canonical	3	17	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTTGGCTGTTATTTCC	NA	False	NA	NA	False	AATAAA	-22	NA	16253896	16234775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_16240685_16241779_16241921_16243630_16243772_16253804
ENSMUSG00000022788.17_8	chr16	-	174	1	ISM	ENSMUSG00000022788.17	ENSMUST00000162045.8	3171	11	107258	61	51269	-61	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACAAAACCAC	NA	False	NA	NA	False	NA	NA	NA	16270817	16270643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_16270600_16270800
ENSMUSG00000022789.16_1	chr16	-	3967	19	NIC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	332	junction_5	248.085384544699	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGCCAGTAAGTGAATTC	NA	False	NA	-22	True	AATAAA	-14	NA	16176821	16130108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_2	chr16	-	4048	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-1	1	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGCCAGTAAGTGAATTC	NA	False	NA	-22	True	AATAAA	-14	NA	16176824	16130108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_3	chr16	-	4016	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-2	1	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGCCAGTAAGTGAATTC	NA	False	NA	-22	True	AATAAA	-14	NA	16176825	16130108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_8	chr16	-	3931	18	FSM	ENSMUSG00000022789.16	ENSMUST00000023477.15	3951	18	5	15	-3	1	multi-exon	FALSE	canonical	3	164	junction_4	261.707977990631	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGCCAGTAAGTGAATTC	NA	False	NA	-22	True	AATAAA	-14	NA	16176818	16130108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022790.15_0	chr16	+	3429	7	FSM	ENSMUSG00000022790.15	ENSMUST00000023478.8	3443	7	6	8	6	-8	multi-exon	FALSE	canonical	0	0	junction_1	0.763762615825973	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAAACATGCTGTCATT	9723	False	NA	NA	False	AATAAA	-10	NA	38722683	38847513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_38722922_38827495_38827660_38829146_38829355_38831578_38831735_38842727_38842851_38843591_38843743_38845124
ENSMUSG00000022791.20_2	chr16	+	4928	15	FSM	ENSMUSG00000022791.20	ENSMUST00000115123.9	4226	15	-704	2	-169	-1	multi-exon	FALSE	canonical	3	77	junction_4	34.8270508281674	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCTCGCGTGCCCGCCTG	NA	False	NA	24	True	AATAAA	-20	NA	32462939	32502309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32463927_32482556_32482738_32484703_32484775_32487038_32487261_32488204_32488358_32488770_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32498276_32499626_32499717_32499814_32499969_32500098_32501502
ENSMUSG00000022791.20_3	chr16	+	4811	16	FSM	ENSMUSG00000022791.20	ENSMUST00000115124.9	4516	16	-297	2	-7	-1	multi-exon	FALSE	canonical	3	42	junction_11	42.4157203561761	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCTCGCGTGCCCGCCTG	NA	False	NA	24	True	AATAAA	-20	NA	32463101	32502309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32463927_32482556_32482738_32484703_32484775_32487038_32487261_32488204_32488358_32488770_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32497486_32497532_32498276_32499626_32499717_32499814_32499969_32500098_32501502
ENSMUSG00000022791.20_44	chr16	+	3216	10	ISM	ENSMUSG00000022791.20	ENSMUST00000238856.2	4267	15	8800	1	659	0	3prime_fragment	FALSE	canonical	3	87	junction_6	30.5468674516899	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTCGCGTGCCCGCCTGT	757	False	NA	25	True	AATAAA	-21	NA	32488869	32502310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32498276_32499626_32499717_32499814_32499969_32500098_32501502
ENSMUSG00000022791.20_50	chr16	+	2972	9	ISM	ENSMUSG00000022791.20	ENSMUST00000238856.2	4267	15	9604	2	1463	-1	3prime_fragment	FALSE	canonical	3	87	junction_5	31.1247489949718	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCTCGCGTGCCCGCCTG	1561	False	NA	24	True	AATAAA	-20	NA	32489673	32502309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32498276_32499626_32499717_32499814_32499969_32500098_32501502
ENSMUSG00000022791.20_61	chr16	+	2647	6	ISM	ENSMUSG00000022791.20	ENSMUST00000115120.9	2796	7	2387	3	2342	-2	3prime_fragment	FALSE	canonical	3	87	junction_2	37.7232024091275	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTCTCGCGTGCCCGCCT	6246	False	NA	23	True	AATAAA	-19	NA	32494358	32502308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32494535_32496711_32496804_32498276_32499626_32499717_32499814_32499969_32500098_32501502
ENSMUSG00000022791.20_64	chr16	+	2225	3	ISM	ENSMUSG00000022791.20	ENSMUST00000238806.2	4189	14	18283	3	-192	-2	3prime_fragment	FALSE	canonical	3	16	junction_1	93	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTCTCGCGTGCCCGCCT	2056	False	NA	23	True	AATAAA	-19	NA	32498334	32502308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32499626_32499969_32500098_32501502
ENSMUSG00000022791.20_68	chr16	+	2141	4	ISM	ENSMUSG00000022791.20	ENSMUST00000115120.9	2796	7	6544	2	-11	-1	3prime_fragment	FALSE	canonical	3	138	junction_1	26.1958436058513	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCTCGCGTGCCCGCCTG	2237	False	NA	24	True	AATAAA	-20	NA	32498515	32502309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32499626_32499717_32499814_32499969_32500098_32501502
ENSMUSG00000022791.20_7	chr16	+	4854	14	FSM	ENSMUSG00000022791.20	ENSMUST00000115125.8	4313	14	-544	3	-192	-2	multi-exon	TRUE	canonical	3	16	junction_12	42.5358880846272	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTCTCGCGTGCCCGCCT	NA	False	NA	23	True	AATAAA	-19	NA	32462916	32502308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32463927_32482556_32482738_32484703_32484775_32487038_32487261_32488204_32488358_32488770_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32498276_32499626_32499969_32500098_32501502
ENSMUSG00000022791.20_71	chr16	+	582	1	ISM	ENSMUSG00000022791.20	ENSMUST00000115126.9	4540	15	38405	1	2097	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTCGCGTGCCCGCCTGT	5450	False	NA	25	True	AATAAA	-21	NA	32501728	32502310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32501700_32502300
ENSMUSG00000022792.17_0	chr16	+	1528	5	FSM	ENSMUSG00000022792.17	ENSMUST00000159683.2	1528	5	-5	5	2	-5	multi-exon	FALSE	canonical	3	45	junction_2	137.095769446034	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCATTTCTTTACACAAG	9517	False	NA	11	True	AATAAA	-16	NA	16120839	16127491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16121612_16122399_16122568_16124361_16124483_16125073_16125245_16127195
ENSMUSG00000022792.17_1	chr16	+	1564	5	FSM	ENSMUSG00000022792.17	ENSMUST00000059955.15	1574	5	-3	13	1	-5	multi-exon	FALSE	canonical	3	300	junction_2	32.9952648117878	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCATTTCTTTACACAAG	9516	False	NA	11	True	AATAAA	-16	NA	16120838	16127491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16121612_16122399_16122568_16124326_16124483_16125073_16125245_16127195
ENSMUSG00000022792.17_7	chr16	+	3478	4	FSM	ENSMUSG00000022792.17	ENSMUST00000159962.8	2805	4	11	-684	2	-6	multi-exon	FALSE	canonical	3	45	junction_2	149.404001136367	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTCATTTCTTTACACAA	9517	False	NA	10	True	AATAAA	-15	NA	16120839	16127490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16121612_16122399_16122568_16124361_16124483_16125073
ENSMUSG00000022793.18_0	chr16	+	2090	7	FSM	ENSMUSG00000022793.18	ENSMUST00000023482.13	2304	7	13	201	11	0	multi-exon	FALSE	canonical	3	15	junction_1	6.0184900284226	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTTGGTCTTGTTTTTT	3925	False	NA	7	True	AGTAAA	-17	NA	38562638	38589210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
ENSMUSG00000022793.18_2	chr16	+	2037	7	FSM	ENSMUSG00000022793.18	ENSMUST00000154902.2	2009	7	-28	0	2	0	multi-exon	TRUE	canonical	2	4	junction_5	9.26312882106017	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTTGGTCTTGTTTTTT	3916	False	NA	7	True	AGTAAA	-17	NA	38562629	38589210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583492_38586276_38586382_38588259
ENSMUSG00000022793.18_3	chr16	+	2161	7	FSM	ENSMUSG00000022793.18	ENSMUST00000114712.8	2168	7	7	0	7	0	multi-exon	FALSE	canonical	3	9	junction_1	7.60847480700888	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTTGGTCTTGTTTTTT	3921	False	NA	7	True	AGTAAA	-17	NA	38562634	38589210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_38562798_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
ENSMUSG00000022797.17_10	chr16	+	4714	18	NIC	ENSMUSG00000022797.17	novel	4890	19	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	3	20	junction_5	103.076851767224	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGACTTGTCGGACTC	8022	False	NA	10	True	AATAAA	-11	NA	32427802	32451604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
ENSMUSG00000022797.17_2	chr16	+	4819	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	63	8	0	-4	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGACTTGTCGGACTC	8020	False	NA	10	True	AATAAA	-11	NA	32427800	32451604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
ENSMUSG00000022797.17_3	chr16	+	6036	17	NIC	ENSMUSG00000022797.17	novel	4890	19	NA	NA	-1	-4	intron_retention	FALSE	canonical	3	399	junction_7	25.2140059044571	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGACTTGTCGGACTC	8019	False	NA	10	True	AATAAA	-11	NA	32427799	32451604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
ENSMUSG00000022797.17_53	chr16	+	1925	1	ISM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	21942	8	6420	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGACTTGTCGGACTC	NA	False	NA	10	True	AATAAA	-11	NA	32449679	32451604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32449700_32451600
ENSMUSG00000022800.15_1	chr16	+	3435	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	34	843	2	-843	multi-exon	FALSE	canonical	3	485	junction_4	65.3632876697615	947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTTATTCTGAGCTATAA	NA	False	NA	-5	True	AATAAA	-18	NA	32698184	32728402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
ENSMUSG00000022800.15_28	chr16	+	2052	1	ISM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	28201	842	3883	-842	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTATTCTGAGCTATAAA	NA	False	NA	-4	True	AATAAA	-19	NA	32726351	32728403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32726400_32728400
ENSMUSG00000022801.14_0	chr16	+	5501	21	FSM	ENSMUSG00000022801.14	ENSMUST00000023491.13	5536	21	25	10	-2	-10	multi-exon	FALSE	canonical	3	40	junction_20	10.2853050513828	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTAAAGCATGGTTTT	NA	False	NA	6	True	AATAAA	-15	NA	32734494	32836007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32734774_32770661_32770807_32772426_32772554_32775669_32775776_32779764_32779902_32782004_32782115_32794249_32794344_32796098_32796220_32799765_32799915_32802197_32802275_32806345_32806398_32807108_32807259_32808800_32808852_32810634_32810689_32814131_32814204_32815317_32815367_32816175_32816284_32817751_32817859_32818873_32819012_32826033_32826112_32832710
ENSMUSG00000022801.14_26	chr16	+	2710	1	ISM	ENSMUSG00000022801.14	ENSMUST00000023491.13	5536	21	98827	11	26924	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGCCTAAAGCATGGTTT	NA	False	NA	5	True	AATAAA	-14	NA	32833296	32836006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32833300_32836000
ENSMUSG00000022801.14_31	chr16	+	5350	20	NIC	ENSMUSG00000022801.14	novel	5536	21	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	3	9	junction_11	16.4029927679418	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTAAAGCATGGTTTTCT	NA	False	NA	8	True	AATAAA	-17	NA	32734497	32836009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_32734774_32770661_32770807_32772426_32772554_32775669_32775776_32779764_32779902_32782004_32782115_32794249_32794344_32796098_32796220_32799765_32799915_32802197_32802275_32806345_32806398_32808800_32808852_32810634_32810689_32814131_32814204_32815317_32815367_32816175_32816284_32817751_32817859_32818873_32819012_32826033_32826112_32832710
ENSMUSG00000022802.3_2	chr16	+	6111	18	NNC	ENSMUSG00000022802.3	novel	6147	17	NA	NA	-1	-7	intron_retention	FALSE	canonical	0	0	junction_17	5.38548606976311	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAACTTGTAGCTTGTC	4778	False	NA	NA	False	AATAAA	-7	NA	32882889	32948058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_32883105_32886680_32886779_32887655_32887687_32889410_32889494_32890250_32890369_32894374_32894554_32901300_32901407_32903388_32903484_32908471_32908590_32909634_32909743_32911655_32911733_32917270_32917382_32925078_32925212_32927383_32927544_32930147_32930279_32937370_32937582_32943891_32944197_32944226
ENSMUSG00000022802.3_4	chr16	+	6141	17	FSM	ENSMUSG00000022802.3	ENSMUST00000023497.3	6147	17	-1	7	-1	-7	multi-exon	FALSE	canonical	2	5	junction_12	4.16645832812474	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAACTTGTAGCTTGTC	4778	False	NA	NA	False	AATAAA	-7	NA	32882889	32948058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32883105_32886680_32886779_32887655_32887687_32889410_32889494_32890250_32890369_32894374_32894554_32901300_32901407_32903388_32903484_32908471_32908590_32909634_32909743_32911655_32911733_32917270_32917382_32925078_32925212_32927383_32927544_32930147_32930279_32937370_32937582_32943891
ENSMUSG00000022802.3_9	chr16	+	3329	1	ISM	ENSMUSG00000022802.3	ENSMUST00000023497.3	6147	17	61827	19	120	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAAATGGAAACTAAC	NA	False	NA	NA	False	AAAACA	-8	NA	32944717	32948046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32944700_32948000
ENSMUSG00000022805.18_1	chr16	-	1086	4	ISM	ENSMUSG00000022805.18	ENSMUST00000023501.16	3048	17	37062	0	36731	0	3prime_fragment	FALSE	canonical	3	28	junction_1	8.01387685344754	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACGTTGTTTGTAAAGCT	NA	False	NA	-3	True	AATAAA	-16	NA	38125443	38118115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_38118658_38122329_38122422_38122978_38123128_38125140
ENSMUSG00000022805.18_2	chr16	-	1964	10	ISM	ENSMUSG00000022805.18	ENSMUST00000023501.16	3048	17	17713	-3	17382	3	3prime_fragment	FALSE	canonical	1	2	junction_7	16.0215903712675	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTGTTTGTAAAGCTTTT	NA	False	NA	0	True	AATAAA	-19	NA	38144792	38118112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_38118658_38122329_38122422_38122978_38123128_38125140_38125363_38127077_38127225_38128443_38128516_38131353_38131471_38140610_38140754_38141732_38141916_38144498
ENSMUSG00000022805.18_3	chr16	-	1499	8	NNC	ENSMUSG00000022805.18	novel	3048	17	NA	NA	23173	-2	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_6	14.2571142284282	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACGTTGTTTGTAAAG	NA	False	NA	-5	True	AATAAA	-14	NA	38139001	38118117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_38118658_38122329_38122422_38122978_38123128_38125140_38125363_38127077_38127225_38128443_38128516_38131353_38131471_38138841
ENSMUSG00000022805.18_6	chr16	-	2093	9	FSM	ENSMUSG00000022805.18	ENSMUST00000114740.3	2529	9	-41	477	-41	-477	multi-exon	FALSE	canonical	0	0	junction_4	3.3166247903554	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	38162215	38143019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_38144022_38144498_38144657_38148569_38148748_38152529_38152712_38153115_38153173_38154103_38154188_38155865_38156024_38156705_38156783_38162018
ENSMUSG00000022807.10_1	chr16	+	4500	13	FSM	ENSMUSG00000022807.10	ENSMUST00000039733.10	4521	13	14	7	14	-7	multi-exon	FALSE	canonical	3	140	junction_5	9.04118662320138	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCAGTGTTGGCGTCTC	NA	False	NA	-2	True	AATAAA	-8	NA	33005454	33063675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_33006371_33016443_33016513_33025041_33025218_33026292_33026373_33030295_33030473_33034711_33034914_33037083_33037230_33044909_33045051_33047226_33047726_33049331_33049519_33054792_33054976_33056624_33056779_33062105
ENSMUSG00000022807.10_6	chr16	+	4324	12	NIC	ENSMUSG00000022807.10	novel	4521	13	NA	NA	16	-4	combination_of_known_splicesites	FALSE	canonical	3	9	junction_4	44.2104284470426	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGTGTTGGCGTCTCTTT	NA	False	NA	1	True	AATAAA	-11	NA	33005456	33063678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_33006371_33016443_33016513_33025041_33025218_33026292_33026373_33034711_33034914_33037083_33037230_33044909_33045051_33047226_33047726_33049331_33049519_33054792_33054976_33056624_33056779_33062105
ENSMUSG00000022808.6_0	chr16	+	2459	14	FSM	ENSMUSG00000022808.6	ENSMUST00000023502.6	3161	14	-6	708	-4	-4	multi-exon	FALSE	canonical	3	473	junction_8	41.4737387501677	851	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGATTTGTATTATTTTA	9277	False	NA	22	True	AATAAA	-22	NA	33071807	33119931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_33071972_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33101002_33101076_33104779_33104842_33106356_33106423_33108061_33108152_33110468_33110569_33112110_33112257_33115010_33115126_33118800
ENSMUSG00000022811.18_0	chr16	+	4080	9	FSM	ENSMUSG00000022811.18	ENSMUST00000165418.9	9830	9	29	5721	2	-1	multi-exon	FALSE	canonical	3	136	junction_3	9.03811374126261	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATACCACGAATGTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	33201234	33319012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_33201398_33241690_33241773_33247563_33247700_33254995_33255345_33277245_33277372_33287224_33287349_33288469_33288554_33315714_33315834_33316115
ENSMUSG00000022811.18_18	chr16	+	3784	1	ISM	ENSMUSG00000022811.18	ENSMUST00000165418.9	9830	9	117632	2112	98023	-2112	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGGTAGGCTGCTAGGA	NA	False	NA	NA	False	AATAAA	-17	NA	33318837	33322621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_33318800_33322600
ENSMUSG00000022812.15_0	chr16	+	2387	11	FSM	ENSMUSG00000022812.15	ENSMUST00000023507.13	8303	11	497	5419	497	-114	multi-exon	FALSE	canonical	3	30	junction_5	7.11407056473296	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAACAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	37909859	38061027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_37910976_37964621_37964816_37991025_37991110_38004796_38004908_38008172_38008304_38011889_38011997_38014258_38014357_38028356_38028453_38040333_38040521_38049039_38049139_38060863
ENSMUSG00000022812.15_2	chr16	+	3504	8	ISM	ENSMUSG00000022812.15	ENSMUST00000114750.2	1750	12	-957	31289	330	0	5prime_fragment	FALSE	canonical	3	30	junction_5	7.55658923167897	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37909692	38029852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_37910976_37964621_37964816_37991025_37991110_38004796_38004908_38008172_38008304_38011889_38011997_38014258_38014357_38028356
ENSMUSG00000022812.15_7	chr16	+	2246	1	ISM	ENSMUSG00000022812.15	ENSMUST00000023507.13	8303	11	154223	615	35186	-615	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTCACCAGTGTGTGGT	NA	False	NA	12	True	AATAAA	-27	NA	38063585	38065831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_38063600_38065800
ENSMUSG00000022814.7_0	chr16	-	1633	6	FSM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	37	1814	2	-1802	multi-exon	FALSE	canonical	3	1087	junction_1	75.962095811003	1447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGACTGGTATTTGTTT	8677	False	NA	NA	False	NA	NA	NA	33787371	33776965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
ENSMUSG00000022814.7_1	chr16	-	2816	5	FSM	ENSMUSG00000022814.7	ENSMUST00000131990.2	3283	5	2	465	2	-465	multi-exon	FALSE	canonical	3	47	junction_4	482.354123025812	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCCTTGGCCAAATCAGT	8677	False	NA	NA	False	ATTAAA	-11	NA	33787371	33775628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33787195
ENSMUSG00000022816.12_0	chr16	+	3585	11	FSM	ENSMUSG00000022816.12	ENSMUST00000114763.3	3789	11	183	21	1	-21	multi-exon	FALSE	canonical	3	116	junction_9	10.1607086367044	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAAAATAAAATAA	5334	False	NA	NA	False	NA	NA	NA	37597417	37656855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_37597515_37597655_37597713_37636067_37636173_37639265_37639396_37641517_37641551_37642962_37643094_37647087_37647207_37649068_37649182_37649475_37649587_37651918_37651996_37654243
ENSMUSG00000022816.12_10	chr16	+	1480	1	ISM	ENSMUSG00000022816.12	ENSMUST00000114763.3	3789	11	58141	21	12312	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	37655375	37656855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_37655400_37656900
ENSMUSG00000022817.16_0	chr16	+	3068	15	FSM	ENSMUSG00000022817.16	ENSMUST00000115028.11	3282	15	20	194	8	-1	multi-exon	FALSE	canonical	3	194	junction_1	15.8688823983111	298	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTAGATCTGATTAC	NA	False	NA	13	True	AATAAA	-14	NA	33650054	33769514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_33650401_33665355_33665442_33685817_33686023_33696171_33696422_33705322_33705492_33719610_33719773_33720879_33720976_33723163_33723254_33730834_33730970_33740154_33740585_33760859_33761083_33764473_33764575_33766860_33766981_33768084_33768252_33769026
ENSMUSG00000022818.14_1	chr16	-	2269	9	FSM	ENSMUSG00000022818.14	ENSMUST00000182741.2	1497	9	-115	-657	-115	551	multi-exon	TRUE	canonical	2	3	junction_8	1.5612494995996	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACATACCTGCTAAATTC	NA	False	NA	NA	False	NA	NA	NA	20135615	20127868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20128732_20128831_20128974_20130978_20131167_20131777_20131920_20132477_20132652_20132947_20133109_20133704_20133855_20134622_20134786_20135329
ENSMUSG00000022818.14_2	chr16	-	488	1	ISM	ENSMUSG00000022818.14	ENSMUST00000023513.12	2720	8	13459	732	4604	551	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACATACCTGCTAAATTC	NA	False	NA	NA	False	NA	NA	NA	20128356	20127868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_20127900_20128400
ENSMUSG00000022818.14_3	chr16	-	2136	8	NIC	ENSMUSG00000022818.14	novel	1497	9	NA	NA	-145	551	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	2.06031501455085	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACATACCTGCTAAATTC	NA	False	NA	NA	False	NA	NA	NA	20135645	20127868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_20128732_20128831_20128974_20130978_20131167_20131777_20131920_20132477_20132652_20132947_20133109_20133704_20133855_20135329
ENSMUSG00000022820.5_0	chr16	-	449	3	FSM	ENSMUSG00000022820.5	ENSMUST00000023514.4	971	3	86	436	-1	-5	multi-exon	FALSE	canonical	3	6062	junction_1	348	960	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGAACAGTTTCTTTTTCT	NA	False	NA	-7	True	AATAAA	-18	NA	37474729	37467967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_37468082_37469375_37469523_37474541
ENSMUSG00000022822.17_10	chr16	-	5270	25	ISM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	26103	3	-5	0	3prime_fragment	FALSE	canonical	3	244	junction_20	68.1710343955228	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTCTTGTTGTATAAAA	NA	False	NA	-6	True	AATAAA	-17	NA	20219041	20150055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555
ENSMUSG00000022822.17_102	chr16	-	4544	5	FSM	ENSMUSG00000022822.17	ENSMUST00000134962.2	4526	5	-20	2	9	-1	multi-exon	FALSE	canonical	3	182	junction_2	11.3578166916005	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTGGTATTTACTGCT	NA	False	NA	-10	True	AATAAA	-16	NA	20245094	20219511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ENSMUSG00000022822.17_35	chr16	-	3375	15	ISM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	51259	3	1507	0	3prime_fragment	TRUE	canonical	3	346	junction_14	55.0241598142607	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTCTTGTTGTATAAAA	NA	False	NA	-6	True	AATAAA	-17	NA	20193885	20150055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740
ENSMUSG00000022822.17_4	chr16	-	5732	30	FSM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	76	3	6	0	multi-exon	FALSE	canonical	3	160	junction_25	98.9917903368873	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTCTTGTTGTATAAAA	NA	False	NA	-6	True	AATAAA	-17	NA	20245068	20150055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ENSMUSG00000022822.17_5	chr16	-	2182	7	ISM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	64138	4	1750	-1	3prime_fragment	FALSE	canonical	3	439	junction_6	35.3949933684915	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCTCTTGTTGTATAAA	NA	False	NA	-7	True	AATAAA	-16	NA	20181006	20150056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931
ENSMUSG00000022827.15_0	chr16	+	2007	8	FSM	ENSMUSG00000022827.15	ENSMUST00000023524.13	2031	8	17	7	2	-4	multi-exon	FALSE	canonical	3	98	junction_4	11.0896163971859	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATATACACAGTGTCATTT	NA	False	NA	NA	False	ATTAAA	-13	NA	37360263	37392740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37383977_37384129_37387681_37387754_37390749_37390789_37391391
ENSMUSG00000022827.15_11	chr16	+	1981	3	ISM	ENSMUSG00000022827.15	ENSMUST00000130028.2	1960	8	26900	3	3066	-3	3prime_fragment	FALSE	canonical	3	103	junction_2	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACACAGTGTCATTTC	2664	False	NA	NA	False	ATTAAA	-14	NA	37387161	37392741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_37387754_37390749_37390789_37391391
ENSMUSG00000022827.15_5	chr16	+	1941	8	FSM	ENSMUSG00000022827.15	ENSMUST00000130028.2	1960	8	8	11	3	-11	multi-exon	FALSE	canonical	3	12	junction_4	38.0767216904748	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGTATGAATATACACAGT	NA	False	NA	NA	False	ATTAAA	-6	NA	37360269	37392733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37384030_37384129_37387681_37387754_37390749_37390789_37391391
ENSMUSG00000022828.11_0	chr16	-	3008	5	FSM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	64	12	51	-12	multi-exon	FALSE	canonical	3	285	junction_4	13.7204227340122	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGACTAAAGAGGTGGT	NA	False	NA	NA	False	AATAAA	-24	NA	37360087	37330163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37360014
ENSMUSG00000022828.11_3	chr16	-	2794	4	ISM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	3737	12	3724	-12	3prime_fragment	FALSE	canonical	3	294	junction_2	12.5521135891752	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGACTAAAGAGGTGGT	NA	False	NA	NA	False	AATAAA	-24	NA	37356414	37330163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082
ENSMUSG00000022828.11_4	chr16	-	1253	1	ISM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	28735	12	28722	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGACTAAAGAGGTGGT	NA	False	NA	NA	False	AATAAA	-24	NA	37331416	37330163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_37330200_37331400
ENSMUSG00000022833.8_0	chr16	+	4006	13	FSM	ENSMUSG00000022833.8	ENSMUST00000231609.2	3999	13	-21	14	1	-6	multi-exon	FALSE	canonical	3	110	junction_6	18.9487613198213	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATTCATACGTGAATTTG	NA	False	NA	1	True	AATATA	-10	NA	34511080	34545558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34517636_34517757_34525198_34525418_34525530_34525626_34526756_34527268_34529893_34530036_34535707_34535779_34541808_34542028_34542106_34542240_34543379
ENSMUSG00000022833.8_15	chr16	+	3182	10	NIC	ENSMUSG00000022833.8	novel	4107	13	NA	NA	3	-3	combination_of_known_splicesites	FALSE	canonical	3	12	junction_5	45.3352396113364	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATACGTGAATTTGTTT	NA	False	NA	4	True	AATATA	-13	NA	34511082	34545561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34517636_34517757_34529893_34530036_34535707_34535779_34541808_34542028_34542106_34542240_34543379
ENSMUSG00000022833.8_33	chr16	+	1956	1	ISM	ENSMUSG00000022833.8	ENSMUST00000023532.7	4107	13	32620	3	19193	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATACGTGAATTTGTTT	NA	False	NA	4	True	AATATA	-13	NA	34543605	34545561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_34543600_34545600
ENSMUSG00000022837.15_0	chr16	+	2261	15	FSM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	-4	0	-3	0	multi-exon	FALSE	canonical	3	136	junction_14	52.2779073016196	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTGTCATGTTATT	NA	False	NA	44	True	AATAAA	-11	NA	36648765	36693075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
ENSMUSG00000022837.15_1	chr16	+	1652	13	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	-3	-9	combination_of_known_junctions	FALSE	canonical	3	130	junction_12	42.1751473685102	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATTTCAAGTCT	NA	False	NA	6	True	NA	NA	NA	36648765	36679925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
ENSMUSG00000022837.15_2	chr16	+	2212	15	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	69.4050518657669	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTGTCATGTTATT	NA	False	NA	44	True	AATAAA	-11	NA	36648761	36693075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
ENSMUSG00000022837.15_3	chr16	+	1602	13	NIC	ENSMUSG00000022837.15	novel	2797	14	NA	NA	-6	-9	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	67.3747294366862	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATTTCAAGTCT	NA	False	NA	6	True	NA	NA	NA	36648762	36679925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
ENSMUSG00000022837.15_32	chr16	+	178	1	ISM	ENSMUSG00000022837.15	ENSMUST00000129123.2	546	4	8134	9	7793	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATTTCAAGTCT	NA	False	NA	6	True	NA	NA	NA	36679747	36679925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_36679700_36679900
ENSMUSG00000022838.15_1	chr16	-	3682	3	NIC	ENSMUSG00000022838.15	novel	1030	6	NA	NA	-25	-11027	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	5.5	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	8175	False	NA	NA	False	NA	NA	NA	36648648	36625213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_36628523_36630833_36630971_36648412
ENSMUSG00000022838.15_2	chr16	-	3744	4	ISM	ENSMUSG00000022838.15	ENSMUST00000023537.6	849	6	-19	11096	15	-11020	5prime_fragment	FALSE	canonical	2	12	junction_2	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8215	False	NA	NA	False	NA	NA	NA	36648608	36625206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_36628523_36630833_36630971_36645019_36645115_36648412
ENSMUSG00000022840.10_0	chr16	+	4378	21	FSM	ENSMUSG00000022840.10	ENSMUST00000114913.3	7008	21	1285	1345	1285	-1345	multi-exon	FALSE	canonical	1	2	junction_2	1.74570902500961	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTTTAGACTATGCTAGT	NA	False	NA	NA	False	AATAAA	-22	NA	34976531	35124763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_34977606_35069170_35069321_35073510_35073633_35087549_35087662_35089325_35089454_35091207_35091367_35092448_35092591_35094794_35094936_35098864_35098888_35099565_35099711_35100708_35100807_35103891_35103980_35109874_35109992_35110396_35110562_35111871_35112048_35113387_35113418_35114331_35114465_35118716_35118981_35119822_35120028_35122636_35122762_35123982
ENSMUSG00000022841.16_0	chr16	+	1892	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	38	150	-3	-150	multi-exon	FALSE	canonical	3	142	junction_4	799.773617969485	3538	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGCTGGCTAAATGTTAA	1391	False	NA	NA	False	AATAAA	-12	NA	20354265	20362656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
ENSMUSG00000022842.19_0	chr16	+	3779	18	ISM	ENSMUSG00000022842.19	ENSMUST00000003898.12	3152	19	0	-4	0	4	intron_retention	TRUE	canonical	3	20	junction_17	7.06715194956219	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGTCTCTTCCTTCAGT	NA	False	NA	17	True	AATAAA	-17	NA	20448577	20464669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090
ENSMUSG00000022842.19_15	chr16	+	3216	18	NIC	ENSMUSG00000022842.19	novel	3152	19	NA	NA	1	0	intron_retention	FALSE	canonical	3	19	junction_17	7.16005837868374	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCCTGTCTCTTCCTT	NA	False	NA	13	True	AATAAA	-13	NA	20448595	20464665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463187_20463809
ENSMUSG00000022842.19_18	chr16	+	2998	18	NIC	ENSMUSG00000022842.19	novel	3152	19	NA	NA	5	4	combination_of_known_splicesites	FALSE	canonical	2	6	junction_2	9.1079644982311	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGTCTCTTCCTTCAGT	NA	False	NA	17	True	AATAAA	-17	NA	20448605	20464669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_20448798_20449101_20449189_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090_20463187_20463809
ENSMUSG00000022842.19_2	chr16	+	3111	19	FSM	ENSMUSG00000022842.19	ENSMUST00000003898.12	3152	19	41	0	18	0	multi-exon	FALSE	canonical	3	19	junction_18	7.37781124490401	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCCTGTCTCTTCCTT	NA	False	NA	13	True	AATAAA	-13	NA	20448618	20464665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090_20463187_20463809
ENSMUSG00000022842.19_25	chr16	+	1759	1	NIC	ENSMUSG00000022842.19	novel	2495	19	NA	NA	5506	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTGATGACTCCAGCTAT	NA	False	NA	NA	False	GATAAA	-12	NA	20463461	20465220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_20463500_20465200
ENSMUSG00000022842.19_7	chr16	+	3845	17	ISM	ENSMUSG00000022842.19	ENSMUST00000003898.12	3152	19	12	0	-5	0	intron_retention	FALSE	canonical	3	21	junction_7	6.73580683734324	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCCTGTCTCTTCCTT	NA	False	NA	13	True	AATAAA	-13	NA	20448589	20464665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817
ENSMUSG00000022843.18_0	chr16	-	3148	24	FSM	ENSMUSG00000022843.18	ENSMUST00000007207.15	3128	24	-40	20	7	4	multi-exon	TRUE	canonical	3	159	junction_10	37.9003269459341	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCACTCATGTATAGAACA	NA	False	NA	-19	True	AATAAA	-27	NA	20534907	20521733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
ENSMUSG00000022843.18_4	chr16	-	3931	21	NIC	ENSMUSG00000022843.18	novel	3128	24	NA	NA	7	0	intron_retention	FALSE	canonical	3	164	junction_14	30.921634820947	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAGCCACTCATGTATAG	NA	False	NA	-23	True	AATAAA	-23	NA	20534907	20521737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
ENSMUSG00000022843.18_6	chr16	-	3008	23	NIC	ENSMUSG00000022843.18	novel	3128	24	NA	NA	21	-1	combination_of_known_splicesites	FALSE	canonical	3	23	junction_10	55.8162014750864	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACACCTAATTAGCCA	NA	False	NA	-34	True	AATAAA	-12	NA	20534893	20521748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
ENSMUSG00000022843.18_70	chr16	-	3078	23	NIC	ENSMUSG00000022843.18	novel	3128	24	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	59.9737718155622	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAGCCACTCATGTATAG	NA	False	NA	-23	True	AATAAA	-23	NA	20534901	20521737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
ENSMUSG00000022844.9_0	chr16	-	1798	17	FSM	ENSMUSG00000022844.9	ENSMUST00000023550.9	1809	17	10	1	10	-1	multi-exon	FALSE	canonical	3	428	junction_7	56.9566378374812	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAGTGGTAGAGTATGTT	NA	False	NA	-11	True	AATAAA	-13	NA	35311233	35217682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311098
ENSMUSG00000022844.9_1	chr16	-	1725	17	NNC	ENSMUSG00000022844.9	novel	1809	17	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_16	132.890697567587	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAGTGGTAGAGTATGTT	NA	False	NA	-11	True	AATAAA	-13	NA	35311251	35217682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311189
ENSMUSG00000022847.16_1	chr16	-	1527	6	FSM	ENSMUSG00000022847.16	ENSMUST00000076422.13	1558	6	22	9	22	-9	multi-exon	FALSE	canonical	3	14	junction_1	5.38887743412299	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTCTATATGTGCTTTC	NA	False	NA	-7	True	TATAAA	-14	NA	20549326	20543916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20544833_20545055_20545224_20547131_20547219_20547468_20547597_20547813_20547968_20549252
ENSMUSG00000022847.16_10	chr16	-	1940	4	NIC	ENSMUSG00000022847.16	novel	1620	6	NA	NA	10	-1	intron_retention	FALSE	canonical	3	18	junction_2	4.49691252107735	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTGCTTTCATACATTA	NA	False	NA	1	True	TATAAA	-22	NA	20549291	20543908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_20545224_20547131_20547219_20547468_20547968_20549252
ENSMUSG00000022847.16_7	chr16	-	1583	6	FSM	ENSMUSG00000022847.16	ENSMUST00000232217.2	1620	6	79	-42	3	-12	multi-exon	FALSE	canonical	0	0	junction_4	9.9196774141098	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAATTCTCTATATGTGCT	NA	False	NA	-10	True	TATAAA	-11	NA	20549298	20543919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20544833_20545055_20545224_20547131_20547219_20547468_20547684_20547813_20547968_20549252
ENSMUSG00000022848.9_0	chr16	-	2089	9	FSM	ENSMUSG00000022848.9	ENSMUST00000023554.9	5395	9	-7	3313	-7	173	multi-exon	FALSE	canonical	3	128	junction_5	11.439378261077	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTAACCAGGTTGGAAG	NA	False	NA	-7	True	AATAAA	-23	NA	35589733	35517744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_35518391_35525123_35525307_35539681_35539810_35543122_35543191_35550655_35550765_35554306_35554437_35555755_35556022_35570865_35570960_35589268
ENSMUSG00000022849.6_0	chr16	+	1570	8	FSM	ENSMUSG00000022849.6	ENSMUST00000231579.2	1703	8	28	105	-4	-105	multi-exon	TRUE	canonical	3	531	junction_3	35.6118531058502	485	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATATGATATACGTGT	5432	False	NA	2	True	AATATA	-8	NA	35590772	35645813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35637521_35637694_35639048_35639133_35645058_35645170_35645252
ENSMUSG00000022853.8_0	chr16	-	2974	7	FSM	ENSMUSG00000022853.8	ENSMUST00000023559.7	2981	7	5	2	5	-2	multi-exon	FALSE	canonical	3	14	junction_3	3.35410196624968	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTCATTGTGTAAAAAAC	NA	False	NA	NA	False	AATAAA	-17	NA	21606552	21580038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_21582087_21584975_21585318_21589165_21589271_21592244_21592357_21594094_21594262_21596548_21596653_21606456
ENSMUSG00000022853.8_2	chr16	-	1006	1	ISM	ENSMUSG00000022853.8	ENSMUST00000023559.7	2981	7	25511	4	25511	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCTTTCATTGTGTAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	21581046	21580040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_21580000_21581000
ENSMUSG00000022855.10_0	chr16	+	3079	17	FSM	ENSMUSG00000022855.10	ENSMUST00000023561.8	4499	17	26	1394	-2	-6	multi-exon	FALSE	canonical	3	339	junction_11	50.6099900587819	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTATATTCTGATAATTT	2228	False	NA	16	True	AATAAA	-16	NA	21828259	21866625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_21828493_21830243_21830303_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
ENSMUSG00000022855.10_1	chr16	+	4385	18	NNC	ENSMUSG00000022855.10	novel	4499	17	NA	NA	1	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	116.378930066064	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATACACACTGCTGGT	2231	False	NA	-1	True	AGTAAA	-6	NA	21828262	21867983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_21828493_21830243_21830303_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382_21867656_21867704
ENSMUSG00000022855.10_8	chr16	+	3145	17	FSM	ENSMUSG00000022855.10	ENSMUST00000231724.2	2135	17	-6	-1004	-6	-11	multi-exon	FALSE	canonical	3	37	junction_2	111.888616489793	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTAGAGTATATTCTGAT	2224	False	NA	11	True	AATAAA	-11	NA	21828255	21866620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_21828493_21830243_21830370_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
ENSMUSG00000022856.10_0	chr16	-	1334	5	FSM	ENSMUSG00000022856.10	ENSMUST00000023562.9	1360	5	25	1	4	0	multi-exon	FALSE	canonical	3	143	junction_1	14.1244468918255	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGCAGGTTCTGAATG	9215	False	NA	-3	True	ATTAAA	-15	NA	21766277	21753076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21764750_21764905_21766117
ENSMUSG00000022856.10_3	chr16	-	1170	4	FSM	ENSMUSG00000022856.10	ENSMUST00000232635.2	1184	4	9	5	9	-5	multi-exon	FALSE	canonical	2	6	junction_3	70.6304938866115	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCAGCCTTGCAGGTTCT	9220	False	NA	-8	True	ATTAAA	-10	NA	21766272	21753081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21766117
ENSMUSG00000022858.17_1	chr16	-	2279	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	2	-594	2	580	multi-exon	TRUE	canonical	3	442	junction_8	660.884723143114	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAAGTGTTGGTTTTC	NA	False	NA	-25	True	AATAAA	-33	NA	22084674	22064617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
ENSMUSG00000022858.17_2	chr16	-	2003	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	81	1319	2	580	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	1473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAAGTGTTGGTTTTC	NA	False	NA	-25	True	AATAAA	-33	NA	22084674	22064617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
ENSMUSG00000022858.17_7	chr16	-	2000	9	NNC	ENSMUSG00000022858.17	novel	3403	9	NA	NA	2	580	at_least_one_novel_splicesite	TRUE	canonical	3	309	junction_2	620.677741968407	174	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAAGTGTTGGTTTTC	NA	False	NA	-25	True	AATAAA	-33	NA	22084674	22064617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_22065617_22065939_22066011_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
ENSMUSG00000022858.17_8	chr16	-	2400	10	NIC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	2	580	combination_of_known_junctions	FALSE	canonical	3	119	junction_8	731.055553444622	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAAGTGTTGGTTTTC	NA	False	NA	-25	True	AATAAA	-33	NA	22084674	22064617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077614_22078012_22084490
ENSMUSG00000022863.16_1	chr16	-	1382	5	FSM	ENSMUSG00000022863.16	ENSMUST00000023570.14	1414	5	25	7	25	-7	multi-exon	FALSE	canonical	3	648	junction_4	83.7895429036345	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACAATGTGTGGTTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	78173673	78156754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_78157427_78161689_78161898_78166000_78166139_78170132_78170312_78173488
ENSMUSG00000022864.15_0	chr16	-	3061	1	ISM	ENSMUSG00000022864.15	ENSMUST00000231973.2	5687	5	33231	5	16841	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTATCTCCGAGCCTCGGT	NA	False	NA	-8	True	AATAAA	-15	NA	78340291	78337230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_78337200_78340300
ENSMUSG00000022864.15_1	chr16	-	2044	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114218.2	1271	5	1	-774	1	502	multi-exon	FALSE	canonical	3	62	junction_4	107.072405408677	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGAGTTCCCGTAATCT	3244	False	NA	0	True	AATAAA	-21	NA	78373544	78341074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373311
ENSMUSG00000022864.15_2	chr16	-	2275	5	FSM	ENSMUSG00000022864.15	ENSMUST00000232052.2	6127	5	3	3849	3	502	multi-exon	FALSE	canonical	3	120	junction_4	82.0381009043969	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGAGTTCCCGTAATCT	3246	False	NA	0	True	AATAAA	-21	NA	78373542	78341074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373078
ENSMUSG00000022864.15_5	chr16	-	1239	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114220.9	2644	5	-9	1414	1	-2	multi-exon	FALSE	canonical	3	46	junction_4	113.984648089118	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTTACTCAATCATTTG	3244	False	NA	0	True	AATAAA	-17	NA	78373544	78341844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373346
ENSMUSG00000022864.15_7	chr16	-	1983	5	NIC	ENSMUSG00000022864.15	novel	6127	5	NA	NA	3	502	combination_of_known_junctions	FALSE	canonical	3	59	junction_4	108.368295640376	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGAGTTCCCGTAATCT	3246	False	NA	0	True	AATAAA	-21	NA	78373542	78341074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373370
ENSMUSG00000022864.15_8	chr16	-	1320	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114219.8	1576	5	3	253	3	13	multi-exon	FALSE	canonical	3	32	junction_4	120.034370077907	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGGCTTCATCGGGGGAC	3246	False	NA	15	True	AATAAA	-32	NA	78373542	78341829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373278
ENSMUSG00000022864.15_9	chr16	-	5325	3	ISM	ENSMUSG00000022864.15	ENSMUST00000231973.2	5687	5	28739	5	12349	-5	3prime_fragment	FALSE	canonical	3	299	junction_1	10.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTATCTCCGAGCCTCGGT	NA	False	NA	-8	True	AATAAA	-15	NA	78344783	78337230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_78342173_78343393_78343457_78344463
ENSMUSG00000022865.15_0	chr16	+	5505	7	FSM	ENSMUSG00000022865.15	ENSMUST00000023572.15	5742	7	223	14	-37	-14	multi-exon	FALSE	canonical	3	63	junction_4	8.97527467855751	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCAGTCCCCTGCCTTGC	NA	False	NA	6	True	AATAAA	-7	NA	78098606	78137634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_78098763_78122044_78122212_78125841_78126047_78130249_78130406_78131056_78131180_78131709_78131849_78133075
ENSMUSG00000022865.15_1	chr16	+	1710	8	FSM	ENSMUSG00000022865.15	ENSMUST00000114229.4	1657	8	-50	-3	-50	3	multi-exon	FALSE	canonical	3	10	junction_7	23.9965983983955	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGAACATTTTAGATTA	NA	False	NA	NA	False	AATAAA	-18	NA	78098593	78156665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_78098763_78122044_78122212_78125841_78126047_78130249_78130406_78131056_78131180_78131709_78131849_78133075_78133260_78156098
ENSMUSG00000022865.15_5	chr16	+	3313	1	ISM	ENSMUSG00000022865.15	ENSMUST00000023572.15	5742	7	35943	9	8414	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCCCTGCCTTGCGGTGT	NA	False	NA	11	True	AATAAA	-12	NA	78134326	78137639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_78134300_78137600
ENSMUSG00000022867.12_0	chr16	+	4759	24	FSM	ENSMUSG00000022867.12	ENSMUST00000023580.8	4776	24	14	3	14	-3	multi-exon	FALSE	canonical	3	45	junction_20	12.0225056756949	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGCTGTGTGTCTATTGC	NA	False	NA	NA	False	AGTAAA	-9	NA	76810607	76913665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_76811029_76830790_76830869_76834235_76834381_76845329_76845454_76847285_76847449_76852041_76852129_76856050_76856189_76859283_76859361_76865940_76866015_76868531_76868681_76871746_76871875_76872158_76872255_76873247_76873410_76873891_76874122_76877211_76877283_76878344_76878574_76880636_76880838_76890490_76890631_76904772_76904952_76906061_76906141_76907953_76908034_76910620_76910745_76911771_76911968_76912277
ENSMUSG00000022867.12_2	chr16	+	2900	18	ISM	ENSMUSG00000022867.12	ENSMUST00000239066.2	4986	26	13	22852	13	0	5prime_fragment	TRUE	canonical	3	54	junction_8	11.7334879931088	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTAAAAAGACTCAGACTAC	NA	False	NA	NA	False	AATAAA	-28	NA	76810606	76890816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_76811029_76830790_76830869_76834235_76834381_76845329_76845454_76847285_76847449_76852041_76852129_76856050_76856189_76859283_76859361_76865940_76866015_76868531_76868681_76871746_76871875_76872158_76872255_76873247_76873410_76873891_76874122_76877211_76877283_76878344_76878574_76880636_76880838_76890490
ENSMUSG00000022868.7_0	chr16	+	1251	6	ISM	ENSMUSG00000022868.7	ENSMUST00000232556.2	1336	7	1853	7	-499	-7	3prime_fragment	FALSE	canonical	3	93	junction_1	9.66643677887566	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAAATGTGGTCATGTTC	NA	False	NA	15	True	AATAAA	-40	NA	22713009	22718186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_22713186_22713544_22713630_22713943_22714108_22715257_22715360_22716877_22716962_22717546
ENSMUSG00000022868.7_1	chr16	+	1100	5	ISM	ENSMUSG00000022868.7	ENSMUST00000231932.2	848	6	2283	-538	-431	-5	3prime_fragment	FALSE	canonical	3	13	junction_1	40.6540280907071	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGGTCATGTTCCT	NA	False	NA	17	True	AATAAA	-42	NA	22713077	22718188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_22713186_22713943_22714108_22715257_22715360_22716877_22716962_22717546
ENSMUSG00000022868.7_4	chr16	+	1660	4	ISM	ENSMUSG00000022868.7	ENSMUST00000231932.2	848	6	2481	-538	-233	-5	3prime_fragment	FALSE	canonical	3	93	junction_2	10.8730042868667	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGGTCATGTTCCT	NA	False	NA	17	True	AATAAA	-42	NA	22713275	22718188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_22714108_22715257_22715360_22716877_22716962_22717546
ENSMUSG00000022871.14_19	chr16	+	1566	8	FSM	ENSMUSG00000022871.14	ENSMUST00000023587.12	1544	8	-19	-3	-19	-2	multi-exon	FALSE	canonical	0	0	junction_2	202.97702694982	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGCTTCAACCTGTTG	NA	False	NA	12	True	AATAAA	-18	NA	22738967	22758505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_22739246_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUSG00000022871.14_28	chr16	+	606	2	ISM	ENSMUSG00000022871.14	ENSMUST00000167399.2	1421	8	16085	4	16085	1	3prime_fragment	FALSE	canonical	3	505	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTGGCTTCAACCTGT	NA	False	NA	10	True	AATAAA	-16	NA	22756579	22758503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_22756708_22758025
ENSMUSG00000022871.14_6	chr16	+	1616	8	FSM	ENSMUSG00000022871.14	ENSMUST00000170805.9	1520	8	-119	23	-71	-2	multi-exon	TRUE	canonical	0	0	junction_2	163.600059877241	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGCTTCAACCTGTTG	NA	False	NA	12	True	AATAAA	-18	NA	22737012	22758505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_22737341_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUSG00000022871.14_7	chr16	+	1381	7	NIC	ENSMUSG00000022871.14	novel	1520	8	NA	NA	-71	-2	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	163.643582893501	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGCTTCAACCTGTTG	NA	False	NA	12	True	AATAAA	-18	NA	22737012	22758505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_22737341_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUSG00000022871.14_8	chr16	+	1620	8	FSM	ENSMUSG00000022871.14	ENSMUST00000231768.2	1572	8	-71	23	-71	-2	multi-exon	FALSE	canonical	0	0	junction_2	190.973018716129	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGCTTCAACCTGTTG	NA	False	NA	12	True	AATAAA	-18	NA	22737012	22758505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_22737345_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUSG00000022881.16_0	chr16	-	1200	11	FSM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	20	8	0	0	multi-exon	FALSE	canonical	2	1237	junction_10	165.436271718145	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946467	22932700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUSG00000022881.16_6	chr16	-	1167	10	ISM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	196	8	150	0	3prime_fragment	FALSE	canonical	2	1242	junction_3	141.821048778181	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946291	22932700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149
ENSMUSG00000022883.12_0	chr16	+	7556	29	FSM	ENSMUSG00000022883.12	ENSMUST00000023600.8	7563	29	0	7	0	-7	multi-exon	FALSE	canonical	0	0	junction_6	15.2815414865151	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACATCATCCTTCCTTG	NA	False	NA	NA	False	ATTAAA	-10	NA	72460036	72842976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_72461083_72539013_72539341_72701517_72701676_72730100_72730222_72730561_72730701_72732546_72732675_72756968_72757094_72759041_72759214_72767054_72767261_72768867_72768950_72769095_72769265_72769358_72769526_72774573_72774696_72775447_72775680_72776732_72776855_72780596_72780769_72786486_72786685_72790554_72790582_72792004_72792048_72798806_72798962_72801297_72801634_72803711_72803820_72806499_72806645_72809762_72810012_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
ENSMUSG00000022883.12_18	chr16	+	3315	7	NNC	ENSMUSG00000022883.12	novel	6601	29	NA	NA	5181	-7	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	22.5585657542515	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACATCATCCTTCCTTG	NA	False	NA	NA	False	ATTAAA	-10	NA	72808489	72842976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_72808749_72809762_72810012_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
ENSMUSG00000022883.12_19	chr16	+	2935	6	NNC	ENSMUSG00000022883.12	novel	6601	29	NA	NA	17403	-7	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	19.2727787306346	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACATCATCCTTCCTTG	NA	False	NA	NA	False	ATTAAA	-10	NA	72820711	72842976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_72820840_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
ENSMUSG00000022883.12_2	chr16	+	7389	29	NNC	ENSMUSG00000022883.12	novel	7563	29	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	15.4296874596358	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACATCATCCTTCCTTG	NA	False	NA	NA	False	ATTAAA	-10	NA	72460038	72842976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_72461083_72539013_72539341_72701517_72701676_72730100_72730222_72730561_72730701_72732546_72732675_72756968_72757094_72759041_72759214_72767054_72767261_72768867_72768950_72769095_72769265_72769358_72769526_72774573_72774696_72775447_72775680_72776732_72776855_72780596_72780769_72786486_72786685_72790554_72790582_72792004_72792048_72798806_72798962_72801462_72801634_72803711_72803820_72806499_72806645_72809762_72810012_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
ENSMUSG00000022883.12_21	chr16	+	2760	5	ISM	ENSMUSG00000022883.12	ENSMUST00000023600.8	7563	29	361030	7	17758	-7	3prime_fragment	FALSE	canonical	3	62	junction_4	4.74341649025257	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACATCATCCTTCCTTG	NA	False	NA	NA	False	ATTAAA	-10	NA	72821066	72842976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
ENSMUSG00000022883.12_24	chr16	+	1808	2	ISM	ENSMUSG00000022883.12	ENSMUST00000023600.8	7563	29	379973	6	36701	-6	3prime_fragment	FALSE	canonical	3	62	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACATCATCCTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-11	NA	72840009	72842977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_72840076_72841235
ENSMUSG00000022883.12_25	chr16	+	1585	1	ISM	ENSMUSG00000022883.12	ENSMUST00000232205.2	6601	29	480804	7	38083	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACATCATCCTTCCTTG	NA	False	NA	NA	False	ATTAAA	-10	NA	72841391	72842976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_72841400_72843000
ENSMUSG00000022883.12_5	chr16	+	7360	28	NNC	ENSMUSG00000022883.12	novel	7563	29	NA	NA	4	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	15.9410780633455	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACATCATCCTTCCTTG	NA	False	NA	NA	False	ATTAAA	-10	NA	72460040	72842976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_72461083_72539013_72539341_72701517_72701676_72730100_72730222_72730561_72730701_72732546_72732675_72756968_72757094_72759041_72759214_72767054_72767261_72768867_72768950_72769095_72769265_72769358_72769526_72774573_72774696_72775447_72775680_72776732_72776855_72780596_72780769_72786486_72786685_72792004_72792048_72798806_72798962_72801462_72801634_72803711_72803820_72806499_72806645_72809762_72810012_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
ENSMUSG00000022883.12_6	chr16	+	7527	28	NIC	ENSMUSG00000022883.12	novel	7563	29	NA	NA	2	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	15.7919428676021	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACATCATCCTTCCTTG	NA	False	NA	NA	False	ATTAAA	-10	NA	72460038	72842976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_72461083_72539013_72539341_72701517_72701676_72730100_72730222_72730561_72730701_72732546_72732675_72756968_72757094_72759041_72759214_72767054_72767261_72768867_72768950_72769095_72769265_72769358_72769526_72774573_72774696_72775447_72775680_72776732_72776855_72780596_72780769_72786486_72786685_72792004_72792048_72798806_72798962_72801297_72801634_72803711_72803820_72806499_72806645_72809762_72810012_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
ENSMUSG00000022884.17_11	chr16	+	1896	11	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	441	junction_1	507.107927368524	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6053	False	NA	NA	False	AATAAA	-17	NA	22926507	22932696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022884.17_12	chr16	+	2000	12	FSM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	-19	-16	0	0	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6053	False	NA	NA	False	AATAAA	-17	NA	22926507	22932696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
ENSMUSG00000022884.17_15	chr16	+	2569	10	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	563	junction_3	575.550128674544	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6053	False	NA	NA	False	AATAAA	-17	NA	22926507	22932696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ENSMUSG00000022884.17_16	chr16	+	3163	10	ISM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	-1	0	0	0	intron_retention	FALSE	canonical	3	1315	junction_4	273.717210111296	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6053	False	NA	NA	False	AATAAA	-17	NA	22926507	22932696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
ENSMUSG00000022884.17_18	chr16	+	3023	9	ISM	ENSMUSG00000022884.17	ENSMUST00000147117.8	1947	10	4	190	0	0	intron_retention	FALSE	canonical	3	563	junction_3	488.360122629807	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6053	False	NA	NA	False	AATAAA	-17	NA	22926507	22932696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
ENSMUSG00000022884.17_2	chr16	+	1752	10	FSM	ENSMUSG00000022884.17	ENSMUST00000147117.8	1947	10	4	191	0	-1	multi-exon	FALSE	canonical	3	563	junction_3	486.088189935799	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6053	False	NA	NA	False	AATAAA	-16	NA	22926507	22932695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022884.17_39	chr16	+	1401	1	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	1847	0	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	1650	False	NA	NA	False	AATAAA	-17	NA	22931295	22932696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_22931300_22932700
ENSMUSG00000022884.17_4	chr16	+	1892	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	314	2	0	-1	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6053	False	NA	NA	False	AATAAA	-16	NA	22926507	22932695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022884.17_6	chr16	+	2709	11	FSM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	-1	0	0	0	multi-exon	FALSE	canonical	3	675	junction_10	433.482883168413	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6053	False	NA	NA	False	AATAAA	-17	NA	22926507	22932696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ENSMUSG00000022885.17_0	chr16	+	4329	8	FSM	ENSMUSG00000022885.17	ENSMUST00000023601.14	4506	8	172	5	172	-5	multi-exon	FALSE	canonical	2	4	junction_2	3.46410161513775	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATCTGCTGCTTCTCTT	NA	False	NA	NA	False	AATAAA	-11	NA	23043661	23179093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_23043980_23075708_23075852_23136313_23136449_23139782_23140429_23147091_23147190_23173615_23173715_23174958_23175134_23176378
ENSMUSG00000022885.17_4	chr16	+	1965	1	ISM	ENSMUSG00000022885.17	ENSMUST00000023601.14	4506	8	133641	3	67911	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGCTGCTTCTCTTTA	1701	False	NA	NA	False	AATAAA	-13	NA	23177130	23179095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_23177100_23179100
ENSMUSG00000022885.17_8	chr16	+	2830	2	ISM	ENSMUSG00000022885.17	ENSMUST00000115335.2	2289	7	65799	-1748	65799	-5	3prime_fragment	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATCTGCTGCTTCTCTT	NA	False	NA	NA	False	AATAAA	-11	NA	23175018	23179093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_23175134_23176378
ENSMUSG00000022887.10_0	chr16	-	2720	4	NNC	ENSMUSG00000022887.10	novel	3786	11	NA	NA	38259	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.44948974278318	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACAACCCTGGCTTGAGA	NA	False	NA	-5	True	AATAAA	-12	NA	23301087	23287117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_23289481_23293623_23293699_23295016_23295155_23300943
ENSMUSG00000022889.8_1	chr16	-	1076	10	FSM	ENSMUSG00000022889.8	ENSMUST00000116584.2	2294	10	509	709	-3	-709	multi-exon	FALSE	canonical	3	703	junction_1	110.666443551761	517	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATGTGTGTTTGTCCCTG	NA	False	NA	NA	False	AATAAA	-11	NA	84532121	84515172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_84515273_84517157_84517206_84520725_84520880_84522012_84522079_84524371_84524485_84527306_84527375_84527715_84527816_84529229_84529370_84531294_84531502_84532041
ENSMUSG00000022890.14_0	chr16	-	475	4	ISM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	770	1	-23	-1	3prime_fragment	FALSE	canonical	3	5740	junction_3	655.078790850553	1088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAATGTCCTTTAAATTC	NA	False	NA	-3	True	AATAAA	-17	NA	84631743	84624759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696
ENSMUSG00000022890.14_1	chr16	-	470	4	NNC	ENSMUSG00000022890.14	novel	809	5	NA	NA	-23	-1	at_least_one_novel_splicesite	FALSE	canonical	3	545	junction_3	2933.80515144866	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAATGTCCTTTAAATTC	NA	False	NA	-3	True	AATAAA	-17	NA	84631743	84624759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_84624884_84625312_84625438_84628216_84628391_84631696
ENSMUSG00000022890.14_2	chr16	-	530	5	ISM	ENSMUSG00000022890.14	ENSMUST00000114191.8	742	6	648	1	-23	-1	3prime_fragment	FALSE	canonical	3	198	junction_4	3188.04854103572	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAATGTCCTTTAAATTC	NA	False	NA	-3	True	AATAAA	-17	NA	84631743	84624759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84630707_84630763_84631696
ENSMUSG00000022890.14_3	chr16	-	3740	3	FSM	ENSMUSG00000022890.14	ENSMUST00000146103.2	526	3	-3213	-1	12	1	multi-exon	FALSE	canonical	3	6096	junction_1	588.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCAAATGTCCTTTAAATT	NA	False	NA	-4	True	AATAAA	-16	NA	84631708	84624760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_84624884_84625312_84625438_84628216
ENSMUSG00000022892.12_0	chr16	-	3269	17	FSM	ENSMUSG00000022892.12	ENSMUST00000226232.2	3120	17	40	-189	9	-5	multi-exon	FALSE	canonical	3	10	junction_10	13.879925927396	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAACTCCAGGCAAGAC	7394	False	NA	-18	True	AATAAA	-7	NA	84970583	84751342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84840463_84840632_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
ENSMUSG00000022892.12_1	chr16	-	3104	16	FSM	ENSMUSG00000022892.12	ENSMUST00000005406.12	3176	16	56	16	2	-9	multi-exon	FALSE	canonical	2	2	junction_10	15.6480740738987	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAATAACTCCAGGCA	7387	False	NA	-22	True	AATAAA	-3	NA	84970590	84751346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
ENSMUSG00000022892.12_2	chr16	-	3329	18	FSM	ENSMUSG00000022892.12	ENSMUST00000227723.2	8167	18	64	4774	2	-9	multi-exon	FALSE	canonical	3	25	junction_10	12.3870677065552	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAATAACTCCAGGCA	7387	False	NA	-22	True	AATAAA	-3	NA	84970590	84751346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84837138_84837196_84840463_84840632_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
ENSMUSG00000022892.12_5	chr16	-	2531	13	ISM	ENSMUSG00000022892.12	ENSMUST00000226232.2	3120	17	93840	-194	-52270	0	3prime_fragment	FALSE	canonical	3	10	junction_10	15.8526198325562	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCCAGGCAAGACGTTTC	NA	False	NA	-13	True	AATAAA	-12	NA	84876783	84751337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84840463_84840632_84853211_84853415_84876727
ENSMUSG00000022895.17_0	chr16	+	3530	10	FSM	ENSMUSG00000022895.17	ENSMUST00000023612.17	3890	10	354	6	-26	0	multi-exon	FALSE	canonical	3	115	junction_1	14.5890200552621	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGCCTCTTTGTAATGT	NA	False	NA	15	True	AATAAA	-15	NA	95503295	95522089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_95503512_95507287_95507360_95510815_95510928_95512699_95512820_95513129_95513331_95515380_95515465_95516010_95516230_95517077_95517342_95518891_95519011_95519966
ENSMUSG00000022895.17_16	chr16	+	1960	1	FSM	ENSMUSG00000022895.17	ENSMUST00000233578.2	3312	1	1352	0	1352	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGCCTCTTTGTAATGT	NA	False	NA	15	True	AATAAA	-15	NA	95520129	95522089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_95520100_95522100
ENSMUSG00000022897.16_0	chr16	+	5851	12	FSM	ENSMUSG00000022897.16	ENSMUST00000119878.8	5759	12	-312	220	-312	-220	multi-exon	FALSE	canonical	3	100	junction_3	29.752977488337	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATTTGTCCTCAGAGTC	NA	False	NA	2	True	GATAAA	-7	NA	94370556	94495706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_94371394_94412277_94412364_94460355_94460553_94464600_94464721_94466774_94466964_94469663_94469812_94472161_94472449_94474195_94474343_94478310_94478452_94485893_94486201_94487337_94487463_94492439
ENSMUSG00000022897.16_18	chr16	+	3437	11	NIC	ENSMUSG00000022897.16	novel	5759	12	NA	NA	-262	368	combination_of_known_junctions	FALSE	canonical	2	15	junction_1	49.351393090773	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGCCCCATAAGGGTGT	NA	False	NA	14	True	AATAAA	-24	NA	94370606	94493428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_94371394_94460355_94460553_94464600_94464721_94466774_94466964_94469663_94469812_94472161_94472449_94474195_94474343_94478310_94478452_94485893_94486201_94487337_94487463_94492439
ENSMUSG00000022897.16_2	chr16	+	5735	12	NIC	ENSMUSG00000022897.16	novel	5759	12	NA	NA	-237	-234	combination_of_known_junctions	FALSE	canonical	3	59	junction_3	37.2933424142936	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGATAAACAGTTGAATAAT	NA	False	NA	-12	True	AAAAAG	-36	NA	94370631	94495692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_94371394_94412277_94412364_94460355_94460553_94464627_94464721_94466774_94466964_94469663_94469812_94472161_94472449_94474195_94474343_94478310_94478452_94485893_94486201_94487337_94487463_94492439
ENSMUSG00000022897.16_29	chr16	+	3625	3	ISM	ENSMUSG00000022897.16	ENSMUST00000023614.5	5754	12	114216	656	16227	-206	3prime_fragment	FALSE	canonical	3	142	junction_1	17	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTCTTTACTATGCTTTT	NA	False	NA	16	True	GATAAA	-21	NA	94485981	94495720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_94486201_94487337_94487463_94492439
ENSMUSG00000022897.16_3	chr16	+	5666	11	FSM	ENSMUSG00000022897.16	ENSMUST00000122284.9	2311	11	-702	-2653	-233	-213	multi-exon	FALSE	canonical	2	15	junction_1	53.9285638599805	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTCAGAGTCTTTACTA	NA	False	NA	9	True	GATAAA	-14	NA	94370635	94495713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_94371394_94460355_94460553_94464627_94464721_94466774_94466964_94469663_94469812_94472161_94472449_94474195_94474343_94478310_94478452_94485893_94486201_94487337_94487463_94492439
ENSMUSG00000022897.16_32	chr16	+	2449	1	ISM	ENSMUSG00000022897.16	ENSMUST00000119878.8	5759	12	122399	210	23513	-210	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGAGTCTTTACTATGC	NA	False	NA	12	True	GATAAA	-17	NA	94493267	94495716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_94493300_94495700
ENSMUSG00000022898.14_0	chr16	-	2132	8	FSM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	404	11	6	-11	multi-exon	FALSE	canonical	3	328	junction_4	18.1490428150369	499	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTTTAATGGTTTGGA	NA	False	NA	-24	True	AATAAA	-12	NA	94327285	94298652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
ENSMUSG00000022900.15_0	chr16	+	2531	8	FSM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	21	490	18	-427	multi-exon	FALSE	canonical	3	17	junction_1	99.4786409235671	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGAGTTTCTACTTCTA	NA	False	NA	19	True	AATAAA	-15	NA	36514360	36546676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ENSMUSG00000022900.15_11	chr16	+	2272	7	NIC	ENSMUSG00000022900.15	novel	3042	8	NA	NA	-7264	-427	combination_of_known_junctions	FALSE	canonical	3	53	junction_3	91.299263718584	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGAGTTTCTACTTCTA	NA	False	NA	19	True	AATAAA	-15	NA	36528635	36546676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_36528783_36529840_36529991_36535862_36535964_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ENSMUSG00000022900.15_31	chr16	+	2278	6	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	15369	488	-6191	-425	3prime_fragment	FALSE	canonical	3	275	junction_3	16.2061716639063	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGTTTCTACTTCTATT	NA	False	NA	21	True	AATAAA	-17	NA	36529708	36546678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ENSMUSG00000022900.15_6	chr16	+	2299	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14292	486	-7268	-423	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTCTACTTCTATTCA	NA	False	NA	23	True	AATAAA	-19	NA	36528631	36546680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ENSMUSG00000022900.15_7	chr16	+	2258	7	ISM	ENSMUSG00000022900.15	ENSMUST00000119464.2	2878	8	14232	423	-7268	-423	3prime_fragment	FALSE	canonical	0	0	junction_6	113.338235188111	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTCTACTTCTATTCA	NA	False	NA	23	True	AATAAA	-19	NA	36528631	36546680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543001_36545878
ENSMUSG00000022905.13_0	chr16	+	4984	14	FSM	ENSMUSG00000022905.13	ENSMUST00000004054.13	5039	14	32	23	-7	-23	multi-exon	FALSE	canonical	3	400	junction_10	42.2312596300516	1008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCAAACGTGGGGCTGTA	NA	False	NA	3	True	AATAAA	-16	NA	35803716	35857478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090
ENSMUSG00000022905.13_39	chr16	+	2726	1	ISM	ENSMUSG00000022905.13	ENSMUST00000004054.13	5039	14	51073	18	12744	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTGGGGCTGTATTGTA	NA	False	NA	8	True	AATAAA	-21	NA	35854757	35857483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_35854800_35857500
ENSMUSG00000022906.16_0	chr16	+	3220	11	FSM	ENSMUSG00000022906.16	ENSMUST00000114878.8	3548	11	323	5	-218	-5	multi-exon	FALSE	canonical	3	21	junction_5	7.49399759807808	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGGCTGTGAATCGT	NA	False	NA	8	True	AATAAA	-14	NA	35759162	35792970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_35759431_35761402_35761506_35763738_35763773_35767870_35768725_35773932_35774149_35777176_35777396_35780373_35780432_35784344_35784735_35788019_35788157_35789960_35790136_35792204
ENSMUSG00000022906.16_1	chr16	+	3301	11	NIC	ENSMUSG00000022906.16	novel	3548	11	NA	NA	-191	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	11.3859562619922	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGGCTGTGAATCGT	NA	False	NA	8	True	AATAAA	-14	NA	35759189	35792970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_35759431_35761402_35761506_35763738_35763881_35767870_35768725_35773932_35774149_35777176_35777396_35780373_35780432_35784344_35784735_35788019_35788157_35789960_35790136_35792204
ENSMUSG00000022906.16_2	chr16	+	3720	12	NIC	ENSMUSG00000022906.16	novel	3548	11	NA	NA	9	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	13.4465578255319	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGGCTGTGAATCGTGA	NA	False	NA	10	True	AATAAA	-16	NA	35758848	35792972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_35759431_35761402_35761506_35763738_35763773_35766138_35766323_35767870_35768725_35773932_35774149_35777176_35777396_35780373_35780432_35784344_35784735_35788019_35788157_35789960_35790136_35792204
ENSMUSG00000022906.16_8	chr16	+	1428	4	ISM	ENSMUSG00000022906.16	ENSMUST00000023622.13	2973	10	25004	5	15731	-5	3prime_fragment	FALSE	canonical	3	23	junction_2	8.37987005998436	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGGCTGTGAATCGT	8591	False	NA	8	True	AATAAA	-14	NA	35784384	35792970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_35784735_35788019_35788157_35789960_35790136_35792204
ENSMUSG00000022911.12_0	chr16	-	3420	9	NIC	ENSMUSG00000022911.12	novel	3528	10	NA	NA	-13	-5	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	12.6830349285965	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATACCATTTATCTAATTT	NA	False	NA	NA	False	AATAAA	-13	NA	62667369	62614052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_62616072_62623082_62623200_62624199_62624426_62626904_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
ENSMUSG00000022911.12_1	chr16	-	3481	10	FSM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	41	6	-6	-6	multi-exon	FALSE	canonical	3	30	junction_2	10.3494497975067	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATACCATTTATCTAATT	NA	False	NA	NA	False	AATAAA	-12	NA	62667362	62614053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_62616072_62622084_62622154_62623082_62623200_62624199_62624426_62626904_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
ENSMUSG00000022911.12_17	chr16	-	3415	9	NIC	ENSMUSG00000022911.12	novel	3528	10	NA	NA	-13	-8	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	18.450948485105	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATATACCATTTATCTAA	NA	False	NA	NA	False	AATAAA	-10	NA	62667369	62614055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_62616072_62622084_62622154_62623082_62623200_62624199_62624426_62626904_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62667047
ENSMUSG00000022911.12_3	chr16	-	2722	1	NIC	ENSMUSG00000022911.12	novel	3528	10	NA	NA	6427	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCATTTATCTAATTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	62616772	62614050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_62614000_62616800
ENSMUSG00000022911.12_7	chr16	-	2346	4	ISM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	43062	6	-1142	-6	3prime_fragment	FALSE	canonical	3	30	junction_2	9.03081145609604	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATACCATTTATCTAATT	NA	False	NA	NA	False	AATAAA	-12	NA	62624341	62614053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_62616072_62622084_62622154_62623082_62623200_62624199
ENSMUSG00000022912.9_0	chr16	+	3278	15	FSM	ENSMUSG00000022912.9	ENSMUST00000023629.9	3303	15	19	6	19	-6	multi-exon	FALSE	canonical	3	266	junction_5	24.011476847711	582	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATGAGCAATTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	62674688	62749703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_62674868_62705763_62705922_62709343_62709369_62719238_62719326_62720688_62720812_62720915_62721048_62723854_62723981_62728024_62728147_62730360_62730477_62734160_62734351_62738437_62738606_62739875_62740045_62744878_62745028_62746690_62746917_62748395
ENSMUSG00000022913.17_0	chr16	-	986	7	FSM	ENSMUSG00000022913.17	ENSMUST00000023630.16	1044	7	49	9	-21	-9	multi-exon	FALSE	canonical	3	1101	junction_3	73.0062782688357	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTAATTGTAACTTTA	NA	False	NA	-19	True	AATAAA	-7	NA	95792111	95781141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_95781312_95783301_95783439_95784992_95785192_95788492_95788556_95789159_95789312_95790691_95790799_95791953
ENSMUSG00000022913.17_2	chr16	-	2148	6	ISM	ENSMUSG00000022913.17	ENSMUST00000023630.16	1044	7	42	9	-28	-9	intron_retention	FALSE	canonical	3	1101	junction_3	74.082116600432	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTAATTGTAACTTTA	NA	False	NA	-19	True	AATAAA	-7	NA	95792118	95781141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_95781312_95783301_95783439_95784992_95785192_95788492_95788556_95789159_95789312_95790691
ENSMUSG00000022914.18_12	chr16	-	3373	5	NIC	ENSMUSG00000022914.18	novel	1193	4	NA	NA	128	-2272	combination_of_known_junctions	FALSE	canonical	3	128	junction_1	36.1144015594887	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTACATGTTTGGAGTGC	NA	False	NA	NA	False	TATAAA	-28	NA	95810085	95802742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_95804555_95805059_95805909_95806162_95806331_95809036_95809415_95809919
ENSMUSG00000022914.18_15	chr16	-	8959	44	NIC	ENSMUSG00000022914.18	novel	9843	41	NA	NA	2	-2277	combination_of_known_junctions	TRUE	canonical	3	75	junction_31	102.463997291444	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATTTTACATGTTTGG	NA	False	NA	NA	False	TATAAA	-23	NA	95883645	95802747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_95804555_95805059_95805909_95806162_95806331_95809036_95809415_95809919_95810769_95811019_95811188_95812909_95813137_95814908_95815076_95817307_95817461_95818780_95818925_95820618_95820661_95820878_95820955_95822415_95822542_95824602_95824724_95824920_95825077_95828544_95828607_95829376_95829489_95831834_95831918_95832726_95832852_95834784_95834893_95834967_95835094_95837061_95837252_95839090_95839186_95842451_95842584_95844200_95844295_95845663_95845848_95847544_95847734_95848134_95848361_95848518_95848648_95853724_95853860_95855031_95855183_95857314_95857414_95858662_95858704_95859882_95859984_95860781_95860853_95862198_95862300_95865949_95866172_95867224_95867386_95867695_95867795_95869676_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
ENSMUSG00000022914.18_3	chr16	-	3394	1	NIC	ENSMUSG00000022914.18	novel	8547	42	NA	NA	13373	-155	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAAATGAAAATATATCAG	NA	False	NA	NA	False	AAGAAA	-5	NA	95796840	95793446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_95793400_95796800
ENSMUSG00000022914.18_50	chr16	-	2296	5	FSM	ENSMUSG00000022914.18	ENSMUST00000113827.4	2382	5	79	7	0	-7	multi-exon	FALSE	canonical	3	425	junction_4	11.1214882097676	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATACGTAAGTATTCTA	NA	False	NA	38	True	AATAAA	-10	NA	95883647	95867874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
ENSMUSG00000022914.18_7	chr16	-	3283	1	Genic_Genomic	ENSMUSG00000022914.18	novel	NA	NA	NA	NA	7010	550	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAGCAAAAAAAA	5517	False	NA	NA	False	ATTAAA	-8	NA	95803203	95799920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_-_95799900_95803200
ENSMUSG00000022938.9_2	chr16	-	1156	8	FSM	ENSMUSG00000022938.9	ENSMUST00000231414.2	806	8	0	-350	0	225	multi-exon	FALSE	canonical	3	14	junction_7	10.770329614269	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATCTTCTGGGGAATGA	NA	False	NA	NA	False	AATACA	-13	NA	97313730	97271939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313657
ENSMUSG00000022940.18_0	chr16	-	94	1	ISM	ENSMUSG00000022940.18	ENSMUST00000113917.8	805	4	11406	27	6634	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTAAATAAAAAATAAAATT	NA	False	NA	1	True	NA	NA	NA	94159742	94159648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_94159600_94159700
ENSMUSG00000022940.18_1	chr16	-	790	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	163	13	-22	-8	multi-exon	FALSE	canonical	3	214	junction_4	95.9283586850104	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTATAGTCAACCTTGAG	NA	False	NA	NA	False	AATAAA	-15	NA	94171390	94165318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171224
ENSMUSG00000022940.18_10	chr16	-	885	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113914.8	912	5	12	15	12	-10	multi-exon	FALSE	canonical	3	19	junction_4	179.103845575688	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATACTATAGTCAACCTTG	NA	False	NA	NA	False	AATAAA	-13	NA	94171862	94165320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171599
ENSMUSG00000022940.18_3	chr16	-	711	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113906.9	745	5	21	13	3	-8	multi-exon	TRUE	canonical	3	162	junction_4	117.933243828871	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTATAGTCAACCTTGAG	NA	False	NA	NA	False	AATAAA	-15	NA	94171550	94165318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171463
ENSMUSG00000022940.18_5	chr16	-	1134	4	FSM	ENSMUSG00000022940.18	ENSMUST00000138514.2	695	4	-193	-246	-8	-8	multi-exon	FALSE	canonical	3	395	junction_3	26.0298973404728	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTATAGTCAACCTTGAG	NA	False	NA	NA	False	AATAAA	-15	NA	94171561	94165318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947
ENSMUSG00000022940.18_6	chr16	-	331	1	NIC	ENSMUSG00000022940.18	novel	966	5	NA	NA	727	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTATAGTCAACCTTGAG	NA	False	NA	NA	False	AATAAA	-15	NA	94165649	94165318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_94165300_94165600
ENSMUSG00000022940.18_8	chr16	-	3595	3	ISM	ENSMUSG00000022940.18	ENSMUST00000113906.9	745	5	4	13	4	-8	intron_retention	FALSE	canonical	3	435	junction_1	11.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTATAGTCAACCTTGAG	NA	False	NA	NA	False	AATAAA	-15	NA	94171567	94165318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_94165647_94166213_94166333_94168419
ENSMUSG00000022941.9_0	chr16	+	1510	4	FSM	ENSMUSG00000022941.9	ENSMUST00000023660.9	1531	4	15	6	15	-6	multi-exon	FALSE	canonical	3	15	junction_3	1.63299316185545	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATGTTTGACAATCAT	NA	False	NA	1	True	AATAAA	-9	NA	94129293	94137788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_94129457_94130204_94130281_94134114_94134183_94136585
ENSMUSG00000022941.9_1	chr16	+	175	1	ISM	ENSMUSG00000022941.9	ENSMUST00000023660.9	1531	4	8034	307	8034	-307	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAAAAAAAAGAAGTAAG	NA	False	NA	NA	False	NA	NA	NA	94137312	94137487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_94137300_94137500
ENSMUSG00000022945.13_0	chr16	+	1891	14	FSM	ENSMUSG00000022945.13	ENSMUST00000023666.11	1922	14	22	9	-1	-4	multi-exon	FALSE	canonical	3	827	junction_1	52.2487224157954	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAAAAAGTGTGTGTGCT	4388	False	NA	12	True	AATAAA	-20	NA	93680810	93702994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
ENSMUSG00000022945.13_20	chr16	+	1841	13	ISM	ENSMUSG00000022945.13	ENSMUST00000117099.8	1894	14	539	-29	261	-4	3prime_fragment	FALSE	canonical	3	863	junction_6	46.2174810602607	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAAAAAGTGTGTGTGCT	4928	False	NA	12	True	AATAAA	-20	NA	93681350	93702994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
ENSMUSG00000022946.11_0	chr16	+	784	4	FSM	ENSMUSG00000022946.11	ENSMUST00000226335.2	1189	4	-1	406	-1	-406	multi-exon	FALSE	canonical	3	21	junction_1	5.24933858267454	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGACTTAAACTTCTTT	NA	False	NA	NA	False	NA	NA	NA	93508817	93537156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_93508957_93513037_93513201_93536041_93536224_93536856
ENSMUSG00000022946.11_13	chr16	+	5166	24	ISM	ENSMUSG00000022946.11	ENSMUST00000045004.11	7319	37	50416	11	-357	-6	3prime_fragment	FALSE	canonical	3	25	junction_5	15.3218773127066	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAACCACACGTAATTGT	NA	False	NA	9	True	AATAAA	-12	NA	93559207	93607465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_93559600_93560045_93560318_93560779_93560933_93562325_93562427_93563013_93563205_93566281_93567915_93568633_93568746_93570808_93570998_93573774_93573898_93574246_93574382_93577644_93577701_93579088_93579194_93579299_93579367_93589974_93590120_93595793_93595874_93596794_93596905_93596988_93597136_93598448_93598511_93600349_93600479_93603222_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
ENSMUSG00000022946.11_17	chr16	+	2850	19	ISM	ENSMUSG00000022946.11	ENSMUST00000045004.11	7319	37	58705	3	-3298	-1	3prime_fragment	FALSE	canonical	3	26	junction_8	14.5181878269217	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACGTAATTGTCATGTGTA	NA	False	NA	17	True	AATAAA	-20	NA	93567496	93607473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_93567915_93568633_93568746_93570808_93570998_93573774_93573898_93574246_93574382_93577644_93577701_93579088_93579194_93579299_93579367_93589974_93590120_93595793_93595874_93596794_93596905_93596988_93597136_93598448_93598511_93600349_93600479_93603222_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
ENSMUSG00000022946.11_2	chr16	+	7286	37	NIC	ENSMUSG00000022946.11	novel	7319	37	NA	NA	-1	-2	combination_of_known_junctions	TRUE	canonical	3	19	junction_4	15.285831210715	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCACACGTAATTGTCATG	NA	False	NA	13	True	AATAAA	-16	NA	93508820	93607469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_93508957_93513037_93513201_93536041_93536224_93536856_93537028_93544351_93544542_93546011_93546111_93546777_93546902_93549011_93549122_93549722_93549838_93552337_93552459_93553963_93554084_93556514_93556618_93557179_93557372_93558920_93559600_93560045_93560318_93560779_93560933_93562325_93562427_93563013_93563205_93566281_93567915_93568633_93568746_93570808_93570998_93573774_93573898_93574246_93574382_93577644_93577701_93579088_93579194_93579299_93579367_93589974_93590120_93595790_93595874_93596794_93596905_93596988_93597136_93598448_93598511_93600349_93600479_93603222_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
ENSMUSG00000022946.11_27	chr16	+	1259	8	ISM	ENSMUSG00000022946.11	ENSMUST00000227278.2	1573	10	1313	6	-42	-3	3prime_fragment	FALSE	canonical	3	48	junction_2	9.96319758523583	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCACACGTAATTGTCAT	5862	False	NA	12	True	AATAAA	-15	NA	93597034	93607468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_93597136_93598448_93598511_93600349_93600479_93603222_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
ENSMUSG00000022946.11_33	chr16	+	686	3	ISM	ENSMUSG00000022946.11	ENSMUST00000227278.2	1573	10	9076	5	-1524	-2	3prime_fragment	FALSE	canonical	3	68	junction_1	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCACACGTAATTGTCATG	958	False	NA	13	True	AATAAA	-16	NA	93604797	93607469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_93604868_93606179_93606310_93606983
ENSMUSG00000022946.11_4	chr16	+	7273	37	FSM	ENSMUSG00000022946.11	ENSMUST00000045004.11	7319	37	36	10	6	-5	multi-exon	FALSE	canonical	3	19	junction_4	15.0894452523839	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAACCACACGTAATTGTC	NA	False	NA	10	True	AATAAA	-13	NA	93508827	93607466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_93508957_93513037_93513201_93536041_93536224_93536856_93537028_93544351_93544542_93546011_93546111_93546777_93546902_93549011_93549122_93549722_93549838_93552337_93552459_93553963_93554084_93556514_93556618_93557179_93557372_93558920_93559600_93560045_93560318_93560779_93560933_93562325_93562427_93563013_93563205_93566281_93567915_93568633_93568746_93570808_93570998_93573774_93573898_93574246_93574382_93577644_93577701_93579088_93579194_93579299_93579367_93589974_93590120_93595793_93595874_93596794_93596905_93596988_93597136_93598448_93598511_93600349_93600479_93603222_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
ENSMUSG00000022947.9_0	chr16	+	1181	3	FSM	ENSMUSG00000022947.9	ENSMUST00000039620.7	1170	3	-15	4	-15	-4	multi-exon	FALSE	canonical	3	122	junction_2	11	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATTATTTGGTTTTTGT	NA	False	NA	16	True	ATTAAA	-18	NA	93480087	93487874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_93480502_93481934_93482043_93487215
ENSMUSG00000022947.9_1	chr16	+	2611	2	NIC	ENSMUSG00000022947.9	novel	1170	3	NA	NA	-22	-14	intron_retention	FALSE	canonical	3	122	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATTTTATGTATTATT	NA	False	NA	6	True	ATTAAA	-8	NA	93480080	93487864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_93482043_93487215
ENSMUSG00000022947.9_2	chr16	+	1069	2	NIC	ENSMUSG00000022947.9	novel	1170	3	NA	NA	-11	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATTATTTGGTTTTTGT	NA	False	NA	16	True	ATTAAA	-18	NA	93480091	93487874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_93480502_93487215
ENSMUSG00000022948.17_0	chr16	-	1722	11	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_10	28.7090578041147	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCATTTGCAGACTGTCT	NA	False	NA	-7	True	AATAAA	-15	NA	93400677	93380350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400453
ENSMUSG00000022948.17_1	chr16	-	1639	10	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_6	39.6842475822944	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCATTTGCAGACTGTCT	NA	False	NA	-7	True	AATAAA	-15	NA	93400683	93380350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93393185_93393224_93396099_93396196_93398525_93398687_93400453
ENSMUSG00000022948.17_3	chr16	-	2172	11	ISM	ENSMUSG00000022948.17	ENSMUST00000233931.2	1826	12	5	3	5	0	intron_retention	FALSE	canonical	3	18	junction_10	35.1153812452606	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCATTTGCAGACTGTCT	NA	False	NA	-7	True	AATAAA	-15	NA	93400698	93380350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024
ENSMUSG00000022948.17_4	chr16	-	1783	12	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	-4	-5	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	40.1213036710482	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAATCATTTGCAGAC	NA	False	NA	-12	True	AATAAA	-10	NA	93400683	93380355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400085_93400453
ENSMUSG00000022948.17_42	chr16	-	3228	10	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	-5	0	intron_retention	FALSE	canonical	3	56	junction_9	27.1051906103737	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCAGACTGTCTTAGTC	NA	False	NA	-2	True	AATAAA	-20	NA	93400684	93380345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400453
ENSMUSG00000022948.17_5	chr16	-	1586	11	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	2	0	combination_of_known_splicesites	TRUE	canonical	3	12	junction_10	36.3512035564161	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCATTTGCAGACTGTCT	NA	False	NA	-7	True	AATAAA	-15	NA	93400949	93380350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400861
ENSMUSG00000022948.17_6	chr16	-	2693	7	ISM	ENSMUSG00000022948.17	ENSMUST00000232870.2	1311	9	4451	8	-1340	-5	3prime_fragment	FALSE	canonical	3	69	junction_6	27.1702451630864	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAATCATTTGCAGAC	NA	False	NA	-12	True	AATAAA	-10	NA	93391718	93380355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134
ENSMUSG00000022951.17_0	chr16	-	2315	4	FSM	ENSMUSG00000022951.17	ENSMUST00000232239.2	2319	4	5	-1	5	-1	multi-exon	FALSE	canonical	3	250	junction_3	18.4932420089069	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACGTTGTTGGTCGTTTTC	NA	False	NA	-4	True	AATAAA	-23	NA	92263026	92188841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92262720
ENSMUSG00000022951.17_2	chr16	-	2187	4	FSM	ENSMUSG00000022951.17	ENSMUST00000023672.10	2190	4	3	0	3	0	multi-exon	FALSE	canonical	3	20	junction_3	123.764112551077	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACGTTGTTGGTCGTTTT	NA	False	NA	-5	True	AATAAA	-22	NA	92196962	92188842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92196783
ENSMUSG00000022951.17_3	chr16	-	1249	1	ISM	ENSMUSG00000022951.17	ENSMUST00000060005.15	2324	4	72944	1	430	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACGTTGTTGGTCGTTTTC	NA	False	NA	-4	True	AATAAA	-23	NA	92190090	92188841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_92188800_92190100
ENSMUSG00000022952.18_0	chr16	-	6476	6	FSM	ENSMUSG00000022952.18	ENSMUST00000168195.8	1985	6	-1196	-3295	4	-637	multi-exon	FALSE	canonical	0	0	junction_3	1.62480768092719	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATAATAAACAAGCATG	NA	False	NA	NA	False	TTTAAA	-31	NA	92494209	92398990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_92403013_92410486_92410649_92441041_92441234_92465595_92465701_92485863_92486021_92492371
ENSMUSG00000022956.12_0	chr16	-	715	7	FSM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	114	9	-22	-2	multi-exon	FALSE	canonical	3	5653	junction_6	394.832348387684	1546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGGGCGTGAGGAGCC	925	False	NA	-10	True	AATAAA	-11	NA	91728461	91722110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
ENSMUSG00000022957.21_3	chr16	+	5375	29	FSM	ENSMUSG00000022957.21	ENSMUST00000056482.14	5364	29	-23	12	-5	-8	multi-exon	FALSE	canonical	3	117	junction_18	26.3675937468704	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAAGTTAGATGGAAA	NA	False	NA	-3	True	ATTAAA	-7	NA	91526235	91668531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081_91625222_91633948_91634077_91636503_91636731_91638376_91638499_91645609_91645858_91647693_91647854_91650582_91650789_91651460_91651544_91655096_91655264_91658081_91658128_91660144_91660267_91664907_91665026_91666505_91666698_91667080
ENSMUSG00000022957.21_4	chr16	+	3477	21	ISM	ENSMUSG00000022957.21	ENSMUST00000056482.14	5364	29	-29	20209	-11	130	5prime_fragment	FALSE	canonical	3	117	junction_18	19.7557586541241	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAACAGCAAATGCCCG	NA	False	NA	NA	False	AATAAA	-20	NA	91526229	91648334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081_91625222_91633948_91634077_91636503_91636731_91638376_91638499_91645609_91645858_91647693
ENSMUSG00000022957.21_5	chr16	+	3410	22	NIC	ENSMUSG00000022957.21	novel	5147	27	NA	NA	-33	-6	combination_of_known_junctions	FALSE	canonical	3	8	junction_21	40.4725488557906	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTATGTGGAGAGAGCAG	NA	False	NA	NA	False	AATAAA	-12	NA	91526207	91650142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081_91625222_91633948_91634077_91636503_91636731_91638376_91638499_91645609_91645858_91647693_91647854_91649750
ENSMUSG00000022957.21_6	chr16	+	3760	16	FSM	ENSMUSG00000022957.21	ENSMUST00000095909.10	6103	16	-28	2371	-11	1672	multi-exon	FALSE	canonical	3	154	junction_12	15.0928975202098	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCAAATCATAGCTGTG	NA	False	NA	NA	False	AGTAAA	-12	NA	91526229	91626870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081
ENSMUSG00000022960.14_0	chr16	-	2362	10	FSM	ENSMUSG00000022960.14	ENSMUST00000023682.12	2365	10	1	2	1	-2	multi-exon	FALSE	canonical	3	157	junction_4	21.061344850545	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAATTGGGTAAGAAACAA	NA	False	NA	-3	True	AATAAA	-17	NA	91485657	91476154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_91476915_91478044_91478258_91478982_91479182_91479403_91479509_91479630_91479710_91480520_91480700_91481189_91481369_91483054_91483259_91484682_91484764_91485294
ENSMUSG00000022960.14_4	chr16	-	2229	10	NIC	ENSMUSG00000022960.14	novel	2365	10	NA	NA	1	-9	combination_of_known_junctions	FALSE	canonical	3	18	junction_8	57.8676651219545	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCACAAGAATTGGGTAA	NA	False	NA	-10	True	AATAAA	-10	NA	91485652	91476161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_91476915_91478044_91478258_91478982_91479182_91479403_91479509_91479630_91479710_91480520_91480700_91481189_91481369_91483054_91483138_91484682_91484764_91485294
ENSMUSG00000022961.19_1	chr16	+	7524	7	FSM	ENSMUSG00000022961.19	ENSMUST00000119368.8	7529	7	-1	6	-1	-6	multi-exon	FALSE	canonical	3	68	junction_6	146.545120090101	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAACTTGTTGTGCAAAA	NA	False	NA	2	True	AATAAA	-13	NA	91444765	91462590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91461807
ENSMUSG00000022961.19_11	chr16	+	363	3	ISM	ENSMUSG00000022961.19	ENSMUST00000114036.9	7945	5	-2	9334	-1	-9334	5prime_fragment	FALSE	canonical	3	478	junction_2	6	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGCACAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	91444765	91451587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_91444873_91448517_91448685_91451498
ENSMUSG00000022961.19_2	chr16	+	8342	12	FSM	ENSMUSG00000022961.19	ENSMUST00000117633.8	8731	12	371	18	-2	-3	multi-exon	FALSE	canonical	3	185	junction_11	92.9729366114073	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGTTGTGTCTTATT	NA	False	NA	8	True	AATACA	-12	NA	91444764	91476077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91475041
ENSMUSG00000022961.19_3	chr16	+	7942	5	FSM	ENSMUSG00000022961.19	ENSMUST00000114036.9	7945	5	-3	6	-2	-6	multi-exon	FALSE	canonical	3	129	junction_4	147.892697588488	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACTGAGCAGCCATTGT	NA	False	NA	-2	True	NA	NA	NA	91444764	91460915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91459379
ENSMUSG00000022961.19_32	chr16	+	4568	10	ISM	ENSMUSG00000022961.19	ENSMUST00000114037.9	8399	12	10284	6	-1780	-3	3prime_fragment	FALSE	canonical	3	171	junction_9	68.3299908848303	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGTTGTGTCTTATT	NA	False	NA	8	True	AATACA	-12	NA	91455050	91476077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91474988
ENSMUSG00000022961.19_33	chr16	+	4141	10	ISM	ENSMUSG00000022961.19	ENSMUST00000117633.8	8731	12	11031	18	-1406	-3	3prime_fragment	FALSE	canonical	3	185	junction_9	65.5491522296413	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGTTGTGTCTTATT	NA	False	NA	8	True	AATACA	-12	NA	91455424	91476077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91475041
ENSMUSG00000022961.19_34	chr16	+	5136	5	ISM	ENSMUSG00000022961.19	ENSMUST00000119368.8	7529	7	8846	6	-3218	-6	3prime_fragment	FALSE	canonical	3	68	junction_4	133.965247359157	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAACTTGTTGTGCAAAA	NA	False	NA	2	True	AATAAA	-13	NA	91453612	91462590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91461807
ENSMUSG00000022961.19_35	chr16	+	3984	3	ISM	ENSMUSG00000022961.19	ENSMUST00000114036.9	7945	5	10418	2	-1645	-2	3prime_fragment	FALSE	canonical	3	129	junction_2	152	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGCAGCCATTGTGTGT	NA	False	NA	2	True	NA	NA	NA	91455185	91460919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_91457469_91458988_91459150_91459379
ENSMUSG00000022961.19_63	chr16	+	2769	4	ISM	ENSMUSG00000022961.19	ENSMUST00000114037.9	8399	12	26178	6	-50	-3	3prime_fragment	FALSE	canonical	3	171	junction_3	71.6767434776131	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGTTGTGTCTTATT	5765	False	NA	8	True	AATACA	-12	NA	91470944	91476077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_91472437_91474292_91474365_91474476_91474593_91474988
ENSMUSG00000022961.19_9	chr16	+	8392	12	FSM	ENSMUSG00000022961.19	ENSMUST00000114037.9	8399	12	1	6	0	-3	multi-exon	FALSE	canonical	3	171	junction_11	95.0516171212009	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGTTGTGTCTTATT	NA	False	NA	8	True	AATACA	-12	NA	91444767	91476077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91474988
ENSMUSG00000022962.16_0	chr16	-	3276	22	FSM	ENSMUSG00000022962.16	ENSMUST00000232289.2	3276	22	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_21	338.409230453656	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAACTTATCTAGCA	NA	False	NA	NA	False	AATAAA	-12	NA	91443819	91418291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
ENSMUSG00000022962.16_1	chr16	-	3279	22	FSM	ENSMUSG00000022962.16	ENSMUST00000023684.14	3518	22	21	218	0	0	multi-exon	FALSE	canonical	3	1247	junction_21	231.829967404665	2381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAACTTATCTAGCA	NA	False	NA	NA	False	AATAAA	-12	NA	91443819	91418291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ENSMUSG00000022962.16_120	chr16	-	1856	11	FSM	ENSMUSG00000022962.16	ENSMUST00000120450.2	1865	11	4	5	0	-5	multi-exon	FALSE	canonical	3	1247	junction_10	242.657701299588	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGAGTGTTTTGATTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	91443819	91430297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ENSMUSG00000022962.16_123	chr16	-	1853	11	FSM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	-6	5	0	-5	multi-exon	FALSE	canonical	3	460	junction_10	453.295984981116	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGAGTGTTTTGATTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	91443819	91430297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
ENSMUSG00000022964.15_0	chr16	-	2224	7	FSM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	116	7	-20	-7	multi-exon	FALSE	canonical	3	77	junction_3	6.43989302878722	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTCGACATGGAATCTGA	NA	False	NA	-13	True	AATAAA	-17	NA	91394572	91371397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_91373047_91374861_91374920_91377089_91377183_91378582_91378651_91380163_91380277_91383829_91383970_91394469
ENSMUSG00000022964.15_2	chr16	-	1286	1	ISM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	22005	7	21869	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTCGACATGGAATCTGA	3	True	NA	-13	True	AATAAA	-17	NA	91372683	91371397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_91371400_91372700
ENSMUSG00000022964.15_5	chr16	-	2134	6	NIC	ENSMUSG00000022964.15	novel	2347	7	NA	NA	-43	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	35.8251308441435	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTCGACATGGAATCTGA	NA	False	NA	-13	True	AATAAA	-17	NA	91394595	91371397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_91373047_91374861_91374920_91377089_91377183_91378582_91378651_91383829_91383970_91394469
ENSMUSG00000022965.9_0	chr16	+	2079	7	FSM	ENSMUSG00000022965.9	ENSMUST00000023687.9	3708	7	6	1623	6	-1169	multi-exon	FALSE	canonical	3	18	junction_6	4.14996653266291	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATATTTGTATCTAAAC	NA	False	NA	NA	False	AATAAA	-11	NA	91343965	91360888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91344121_91351835_91351969_91354772_91354967_91356864_91357014_91357432_91357593_91358507_91358666_91359758
ENSMUSG00000022967.14_1	chr16	+	3897	11	FSM	ENSMUSG00000022967.14	ENSMUST00000023689.11	3909	11	8	4	-3	0	multi-exon	FALSE	canonical	3	156	junction_4	11.4908659377786	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATTGGATATTTTCTTTA	NA	False	NA	20	True	NA	NA	NA	91282133	91304325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91282305_91286583_91286708_91289518_91289698_91292036_91292192_91292278_91292421_91293031_91293150_91296291_91296492_91296743_91296878_91298509_91298658_91300272_91300416_91301942
ENSMUSG00000022967.14_21	chr16	+	1326	1	ISM	ENSMUSG00000022967.14	ENSMUST00000023689.11	3909	11	20872	6	806	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTATTGGATATTTTCTT	NA	False	NA	18	True	NA	NA	NA	91302997	91304323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_91303000_91304300
ENSMUSG00000022967.14_5	chr16	+	3722	10	NIC	ENSMUSG00000022967.14	novel	3433	13	NA	NA	4	0	intron_retention	FALSE	canonical	3	7	junction_2	50.8296598551245	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATTGGATATTTTCTTTA	NA	False	NA	20	True	NA	NA	NA	91282129	91304325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_91282305_91286583_91286708_91292036_91292192_91292278_91292421_91293031_91293150_91296291_91296492_91296743_91296878_91298509_91298658_91300272_91300416_91301942
ENSMUSG00000022969.14_0	chr16	+	1785	7	FSM	ENSMUSG00000022969.14	ENSMUST00000023691.12	1850	7	44	21	-41	-9	multi-exon	FALSE	canonical	3	23	junction_1	1.63299316185545	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGGAAGAAAGGAAATTT	NA	False	NA	NA	False	NA	NA	NA	91203166	91222701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91203261_91204505_91204630_91208770_91208929_91211500_91211668_91216219_91216368_91218620_91218779_91221765
ENSMUSG00000022971.19_0	chr16	+	1148	7	FSM	ENSMUSG00000022971.19	ENSMUST00000117836.8	1099	7	-49	0	18	0	multi-exon	FALSE	canonical	3	47	junction_6	3.19722101554181	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGGCTCTGTCTCTAAT	NA	False	NA	8	True	AATAAA	-20	NA	91169688	91190928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644
ENSMUSG00000022971.19_3	chr16	+	3019	9	FSM	ENSMUSG00000022971.19	ENSMUST00000023693.14	3047	9	20	8	20	-8	multi-exon	FALSE	canonical	1	3	junction_7	21.683807322516	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAGACTTTATAGTCTT	NA	False	NA	1	True	AATACA	-13	NA	91169690	91202469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644_91190802_91196105_91196234_91200597
ENSMUSG00000022972.11_1	chr16	-	1096	7	FSM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	289	45	1	-45	multi-exon	FALSE	canonical	3	724	junction_4	16.7994708911389	375	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGAATGTTTTAGGAC	NA	False	NA	-43	True	AATAAA	-10	NA	90731713	90722741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
ENSMUSG00000022973.19_0	chr16	-	6795	28	NIC	ENSMUSG00000022973.19	novel	7012	33	NA	NA	17	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_27	11.5384488762197	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGCTGACTTCTTTACT	2465	False	NA	-21	True	AATAAA	-12	NA	90807932	90732989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90735923_90741242_90741464_90741686_90741796_90743679_90743751_90747238_90747374_90748687_90748898_90752196_90752360_90754481_90754561_90757131_90757348_90757447_90757566_90758261_90758419_90760705_90760865_90761100_90761294_90761392_90761534_90764187_90764273_90766070_90766263_90770797_90770964_90773486_90773640_90775576_90775659_90776638_90776809_90777836_90777934_90778695_90778758_90784227_90784312_90785029_90785256_90788267_90788536_90790828_90790916_90806911_90807058_90807860
ENSMUSG00000022973.19_1	chr16	-	6773	28	NIC	ENSMUSG00000022973.19	novel	7090	32	NA	NA	-31	2	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	10.2247715554318	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACCAGCTGACTTCTTTA	2365	False	NA	-23	True	AATAAA	-10	NA	90808032	90732991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90735923_90741242_90741464_90741686_90741796_90743679_90743751_90747238_90747374_90748687_90748898_90752196_90752360_90754481_90754561_90757131_90757348_90757447_90757566_90758261_90758419_90760705_90760865_90761100_90761294_90761392_90761534_90764187_90764273_90766070_90766263_90770797_90770964_90773486_90773640_90775576_90775659_90776638_90776809_90777836_90777934_90778695_90778758_90784227_90784312_90785029_90785256_90788267_90788536_90790828_90790916_90806911_90807058_90807980
ENSMUSG00000022973.19_10	chr16	-	2620	1	ISM	ENSMUSG00000022973.19	ENSMUST00000121759.8	7090	32	72588	9	6151	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCTGACTTCTTTACTC	NA	False	NA	-20	True	AATAAA	-13	NA	90735608	90732988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_90733000_90735600
ENSMUSG00000022973.19_5	chr16	-	6825	29	NIC	ENSMUSG00000022973.19	novel	7012	33	NA	NA	24	2	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	15.5596285565024	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACCAGCTGACTTCTTTA	2472	False	NA	-23	True	AATAAA	-10	NA	90807925	90732991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90735923_90741242_90741464_90741686_90741796_90743679_90743751_90743902_90743942_90747238_90747374_90748687_90748898_90752196_90752360_90754481_90754561_90757131_90757348_90757447_90757566_90758261_90758419_90760705_90760865_90761100_90761294_90761392_90761534_90764187_90764273_90766070_90766263_90770797_90770964_90773486_90773640_90775576_90775659_90776638_90776809_90777836_90777934_90778695_90778758_90784227_90784312_90785029_90785256_90788267_90788536_90790828_90790916_90806911_90807058_90807860
ENSMUSG00000022973.19_6	chr16	-	6816	29	NIC	ENSMUSG00000022973.19	novel	6910	33	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	14.7490487413769	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCTGACTTCTTTACTC	2364	False	NA	-20	True	AATAAA	-13	NA	90808033	90732988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90735923_90741242_90741464_90741686_90741796_90743679_90743751_90743902_90743942_90747238_90747374_90748687_90748898_90752196_90752360_90754481_90754561_90757131_90757348_90757447_90757566_90758261_90758419_90760705_90760865_90761100_90761294_90761392_90761534_90764187_90764273_90766070_90766263_90770797_90770964_90773486_90773640_90775576_90775659_90776638_90776809_90777836_90777934_90778695_90778758_90784227_90784312_90785029_90785256_90788267_90788536_90790828_90790916_90806911_90807058_90807980
ENSMUSG00000022974.13_0	chr16	-	2998	18	FSM	ENSMUSG00000022974.13	ENSMUST00000118522.8	3973	18	90	885	90	-6	multi-exon	FALSE	canonical	3	98	junction_10	93.8519042470415	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCTTGAGAATGAAAGGA	NA	False	NA	1	True	AATACA	-35	NA	90841341	90811809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827320_90827445_90830985_90831176_90831687_90831906_90832806_90832911_90833355_90833578_90834129_90834307_90839440_90839570_90840893
ENSMUSG00000022974.13_13	chr16	-	3448	17	NIC	ENSMUSG00000022974.13	novel	3973	18	NA	NA	-58	-27	intron_retention	FALSE	canonical	3	98	junction_10	90.7771137181614	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCGTGTCCTTAAATGT	NA	False	NA	-20	True	AATATA	-34	NA	90841300	90811830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827320_90827445_90830985_90831906_90832806_90832911_90833355_90833578_90834129_90834307_90839440_90839570_90840893
ENSMUSG00000022974.13_21	chr16	-	3507	17	NIC	ENSMUSG00000022974.13	novel	2732	18	NA	NA	89	-27	intron_retention	FALSE	canonical	3	97	junction_10	90.8908815214706	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCGTGTCCTTAAATGT	NA	False	NA	-20	True	AATATA	-34	NA	90841342	90811830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827303_90827445_90830985_90831906_90832806_90832911_90833355_90833578_90834129_90834307_90839440_90839570_90840893
ENSMUSG00000022974.13_3	chr16	-	3116	18	FSM	ENSMUSG00000022974.13	ENSMUST00000023698.12	2732	18	-288	-96	91	96	multi-exon	FALSE	canonical	3	97	junction_10	93.9504028766883	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAACTTCGTTTACGTA	NA	False	NA	NA	False	NA	NA	NA	90841340	90811707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827303_90827445_90830985_90831176_90831687_90831906_90832806_90832911_90833355_90833578_90834129_90834307_90839440_90839570_90840893
ENSMUSG00000022974.13_41	chr16	-	2495	10	ISM	ENSMUSG00000022974.13	ENSMUST00000023698.12	2732	18	15705	27	-821	-27	3prime_fragment	FALSE	canonical	3	305	junction_4	23.8083915074673	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCGTGTCCTTAAATGT	NA	False	NA	-20	True	AATATA	-34	NA	90825347	90811830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117
ENSMUSG00000022974.13_6	chr16	-	3546	11	ISM	ENSMUSG00000022974.13	ENSMUST00000023698.12	2732	18	11719	-124	-1629	124	3prime_fragment	FALSE	canonical	3	97	junction_10	76.0959920100921	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGATGAGTGTTTAGTGT	NA	False	NA	NA	False	ATTAAA	-26	NA	90829333	90811679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827303
ENSMUSG00000022974.13_9	chr16	-	7006	16	NIC	ENSMUSG00000022974.13	novel	2732	18	NA	NA	-58	-27	intron_retention	FALSE	canonical	3	97	junction_10	88.458402025409	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCGTGTCCTTAAATGT	NA	False	NA	-20	True	AATATA	-34	NA	90841300	90811830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827303_90831906_90832806_90832911_90833355_90833578_90834129_90834307_90839440_90839570_90840893
ENSMUSG00000022978.12_0	chr16	-	1272	5	FSM	ENSMUSG00000022978.12	ENSMUST00000099554.5	1333	5	50	11	50	-11	multi-exon	FALSE	canonical	3	276	junction_1	13.865424623862	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAACGTTCATTTGTTTG	NA	False	NA	-11	True	AATAAA	-14	NA	90524242	90516210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_90516867_90517541_90517639_90518523_90518647_90523180_90523248_90523913
ENSMUSG00000022978.12_1	chr16	-	592	1	ISM	ENSMUSG00000022978.12	ENSMUST00000099554.5	1333	5	7490	11	7225	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAACGTTCATTTGTTTG	NA	False	NA	-11	True	AATAAA	-14	NA	90516802	90516210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_90516200_90516800
ENSMUSG00000022978.12_3	chr16	-	2828	3	FSM	ENSMUSG00000022978.12	ENSMUST00000147546.2	493	3	-211	-2124	54	-11	multi-exon	FALSE	canonical	3	279	junction_2	16	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAACGTTCATTTGTTTG	NA	False	NA	-11	True	AATAAA	-14	NA	90524238	90516210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_90518647_90523180_90523248_90523913
ENSMUSG00000022978.12_6	chr16	-	1931	4	NIC	ENSMUSG00000022978.12	novel	1333	5	NA	NA	66	-11	intron_retention	FALSE	canonical	3	279	junction_3	14.0554457615387	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAACGTTCATTTGTTTG	NA	False	NA	-11	True	AATAAA	-14	NA	90524226	90516210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90517639_90518523_90518647_90523180_90523248_90523913
ENSMUSG00000022982.11_2	chr16	+	363	3	FSM	ENSMUSG00000022982.11	ENSMUST00000232505.2	3970	3	3600	7	3600	-7	multi-exon	FALSE	canonical	3	735	junction_1	39	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGTAACTGTGTGAC	NA	False	NA	12	True	ATTAAA	-11	NA	90021241	90023210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_90021314_90022032_90022151_90023037
ENSMUSG00000022982.11_5	chr16	+	425	4	ISM	ENSMUSG00000022982.11	ENSMUST00000023707.11	641	5	2059	7	2059	-7	3prime_fragment	FALSE	canonical	3	621	junction_1	78.8416133777081	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGTAACTGTGTGAC	NA	False	NA	12	True	ATTAAA	-11	NA	90019700	90023210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_90019765_90021243_90021314_90022032_90022151_90023037
ENSMUSG00000022982.11_6	chr16	+	291	2	ISM	ENSMUSG00000022982.11	ENSMUST00000023707.11	641	5	4391	7	4391	-7	3prime_fragment	FALSE	canonical	3	813	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGTAACTGTGTGAC	NA	False	NA	12	True	ATTAAA	-11	NA	90022032	90023210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_90022151_90023037
ENSMUSG00000022982.11_8	chr16	+	139	1	ISM	ENSMUSG00000022982.11	ENSMUST00000023707.11	641	5	5430	7	5430	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGTAACTGTGTGAC	NA	False	NA	12	True	ATTAAA	-11	NA	90023071	90023210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_90023100_90023200
ENSMUSG00000022983.17_0	chr16	-	4399	20	FSM	ENSMUSG00000022983.17	ENSMUST00000039280.9	4266	20	-35	-98	-35	0	multi-exon	FALSE	canonical	3	105	junction_2	46.4080420960757	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACGTTAATGTGTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	90081348	90025844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_90027133_90039414_90039607_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ENSMUSG00000022983.17_1	chr16	-	917	1	NIC	ENSMUSG00000022983.17	novel	574	2	NA	NA	335	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACGTTAATGTGTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	90026761	90025844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90025800_90026800
ENSMUSG00000022983.17_12	chr16	-	4333	20	NIC	ENSMUSG00000022983.17	novel	4367	20	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	106	junction_9	44.5324743781235	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACGTTAATGTGTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	90081348	90025844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90027133_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ENSMUSG00000022983.17_14	chr16	-	4336	20	NIC	ENSMUSG00000022983.17	novel	4367	20	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_10	58.24796549893	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACGTTAATGTGTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	90081348	90025844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90027133_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046941_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ENSMUSG00000022983.17_19	chr16	-	4391	20	NIC	ENSMUSG00000022983.17	novel	4367	20	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_10	59.2634383465366	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACGTTAATGTGTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	90081349	90025844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90027133_90039414_90039607_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046526_90046601_90046941_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ENSMUSG00000022983.17_7	chr16	-	4314	20	FSM	ENSMUSG00000022983.17	ENSMUST00000163419.9	4175	20	-145	6	-28	0	multi-exon	TRUE	canonical	3	110	junction_9	44.050650776067	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACGTTAATGTGTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	90081341	90025844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_90027133_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046526_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ENSMUSG00000022983.17_8	chr16	-	4388	20	NIC	ENSMUSG00000022983.17	novel	4367	20	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_2	45.9499908819345	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACGTTAATGTGTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	90081349	90025844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90027133_90039414_90039607_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046526_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ENSMUSG00000022983.17_9	chr16	-	4415	20	NIC	ENSMUSG00000022983.17	novel	4367	20	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_10	59.596240748535	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACGTTAATGTGTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	90081361	90025844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_90027133_90039414_90039607_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046941_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
ENSMUSG00000022992.18_11	chr15	-	2117	10	NIC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	1	77	junction_9	343.824388135198	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGTGTAAAGTGATCT	NA	False	NA	-22	True	ATTAAA	-13	NA	98432168	98416701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
ENSMUSG00000022992.18_2	chr15	-	2317	10	FSM	ENSMUSG00000022992.18	ENSMUST00000116400.4	2324	10	-6	13	-6	0	multi-exon	FALSE	canonical	1	217	junction_2	304.537941847467	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGTGTAAAGTGATCT	NA	False	NA	-22	True	ATTAAA	-13	NA	98432131	98416701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98417429_98418198_98418307_98422441_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
ENSMUSG00000022992.18_3	chr15	-	2422	10	FSM	ENSMUSG00000022992.18	ENSMUST00000230542.2	3596	10	11	1163	-9	0	multi-exon	FALSE	canonical	1	385	junction_5	229.121025758101	1074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGTGTAAAGTGATCT	NA	False	NA	-22	True	ATTAAA	-13	NA	98432134	98416701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
ENSMUSG00000022992.18_9	chr15	-	2301	9	NIC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	1	91	junction_6	351.279247003008	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGTGTAAAGTGATCT	NA	False	NA	-22	True	ATTAAA	-13	NA	98432128	98416701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429600_98429780_98431398_98431658_98431782
ENSMUSG00000022994.10_1	chr15	-	126	1	ISM	ENSMUSG00000022994.10	ENSMUST00000096224.6	6038	22	17530	5	4131	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGCCCTGTTCTCTGCA	NA	False	NA	NA	False	AATAAA	-31	NA	98487984	98487858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98487900_98488000
ENSMUSG00000022994.10_2	chr15	-	5473	21	FSM	ENSMUSG00000022994.10	ENSMUST00000228566.2	3707	21	384	-2150	384	-2	multi-exon	FALSE	canonical	0	0	junction_2	1.02469507659596	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-15	NA	98502228	98487874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98490357_98490553_98490679_98491341_98491547_98492211_98492476_98492793_98492924_98493007_98493044_98493920_98494100_98494397_98494557_98494774_98494892_98495044_98495133_98495260_98495359_98495607_98495756_98495978_98496005_98496237_98496367_98496502_98496645_98496738_98496898_98497780_98497909_98498058_98498171_98498275_98498398_98498791_98498942_98501754
ENSMUSG00000022994.10_4	chr15	-	2858	4	NIC	ENSMUSG00000022994.10	novel	3963	8	NA	NA	-16	-2	intron_retention	FALSE	canonical	0	0	junction_2	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-15	NA	98492131	98487874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_98490357_98490553_98490679_98491341_98491547_98492085
ENSMUSG00000022995.17_10	chr1	-	4409	15	ISM	ENSMUSG00000022995.17	ENSMUST00000111024.10	3572	16	22	-826	12	826	intron_retention	FALSE	canonical	3	22	junction_3	127.62077113264	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAAAAGAA	5655	False	NA	10	True	NA	NA	NA	181847533	181731138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_181733463_181733951_181734010_181735862_181735942_181739161_181739225_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181749334_181751124_181751406_181758242_181758328_181783958_181784137_181789318_181789485_181847094
ENSMUSG00000022995.17_11	chr1	-	4486	14	NIC	ENSMUSG00000022995.17	novel	11229	14	NA	NA	10	772	intron_retention	FALSE	canonical	3	25	junction_9	101.725526984315	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAACGTTTTGTGCCTTG	5653	False	NA	-44	True	NA	NA	NA	181847535	181731192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181749526_181751124_181751406_181758242_181758328_181783958_181784137_181789318_181789485_181847094
ENSMUSG00000022995.17_27	chr1	-	3937	10	ISM	ENSMUSG00000022995.17	ENSMUST00000193703.6	11229	14	95975	6577	78	1439	3prime_fragment	FALSE	canonical	3	260	junction_9	59.695523748063	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTTTCTTGTTTGTGAC	NA	False	NA	-25	True	AATAAA	-13	NA	181751251	181730525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181749334_181751124
ENSMUSG00000022995.17_4	chr1	-	4339	14	FSM	ENSMUSG00000022995.17	ENSMUST00000193703.6	11229	14	-300	7190	19	826	multi-exon	FALSE	canonical	3	260	junction_9	54.2155461448742	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAAAAGAA	5662	False	NA	10	True	NA	NA	NA	181847526	181731138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181749334_181751124_181751406_181758242_181758328_181783958_181784137_181789318_181789485_181847094
ENSMUSG00000022995.17_6	chr1	-	2013	1	ISM	ENSMUSG00000022995.17	ENSMUST00000193703.6	11229	14	114690	6575	1867	1441	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTCTTGTTTGTGACAC	NA	False	NA	-23	True	AATAAA	-15	NA	181732536	181730523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_181730500_181732500
ENSMUSG00000022999.16_0	chr15	-	2280	15	NIC	ENSMUSG00000022999.16	novel	2304	17	NA	NA	13	1	intron_retention	FALSE	canonical	3	43	junction_7	10.3275439125334	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGAGCTTGTCCCTGTGTC	NA	False	NA	-6	True	AATAAA	-32	NA	98815923	98801800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
ENSMUSG00000022999.16_1	chr15	-	2127	17	FSM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	173	4	-3	0	multi-exon	FALSE	canonical	3	43	junction_9	10.4395581803063	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGAGCTTGTCCCTGTGT	NA	False	NA	-7	True	AATAAA	-31	NA	98815939	98801801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
ENSMUSG00000022999.16_4	chr15	-	2235	16	NIC	ENSMUSG00000022999.16	novel	2304	17	NA	NA	-31	1	intron_retention	FALSE	canonical	3	43	junction_8	10.5189775591019	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGAGCTTGTCCCTGTGTC	NA	False	NA	-6	True	AATAAA	-32	NA	98815967	98801800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
ENSMUSG00000023004.9_0	chr15	-	1604	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	128	11	1	-11	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	15544	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAAGAGTTTTGTTTCT	159	False	NA	NA	False	AGTAAA	-7	NA	98832318	98829316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
ENSMUSG00000023007.16_0	chr15	+	3186	26	NIC	ENSMUSG00000023007.16	novel	2619	25	NA	NA	-17	4	combination_of_known_junctions	FALSE	canonical	3	102	junction_21	28.1893596947501	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACTCCTTTGTCCTCTTC	NA	False	NA	40	True	TTTAAA	-21	NA	99193102	99214895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99193155_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213363_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
ENSMUSG00000023007.16_10	chr15	+	3246	25	NIC	ENSMUSG00000023007.16	novel	3308	26	NA	NA	-6	4	combination_of_known_splicesites	TRUE	canonical	3	25	junction_1	39.2925061769629	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACTCCTTTGTCCTCTTC	NA	False	NA	40	True	TTTAAA	-21	NA	99192961	99214895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99193155_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213363_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
ENSMUSG00000023007.16_20	chr15	+	3244	25	NIC	ENSMUSG00000023007.16	novel	3308	26	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	39.0095919472236	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACAACTCCTTTGTCCT	NA	False	NA	36	True	TTTAAA	-17	NA	99192962	99214891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99193155_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213360_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
ENSMUSG00000023007.16_3	chr15	+	3185	26	NIC	ENSMUSG00000023007.16	novel	3129	25	NA	NA	-13	4	combination_of_known_junctions	FALSE	canonical	3	106	junction_21	27.793351723029	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACTCCTTTGTCCTCTTC	NA	False	NA	40	True	TTTAAA	-21	NA	99193106	99214895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99193155_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213360_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
ENSMUSG00000023007.16_59	chr15	+	3293	26	NIC	ENSMUSG00000023007.16	novel	3308	26	NA	NA	-1	4	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	40.2403976123497	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACTCCTTTGTCCTCTTC	NA	False	NA	40	True	TTTAAA	-21	NA	99193150	99214895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99193310_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213363_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
ENSMUSG00000023007.16_6	chr15	+	3326	26	NIC	ENSMUSG00000023007.16	novel	3308	26	NA	NA	7	4	combination_of_known_junctions	FALSE	canonical	3	14	junction_22	42.0526527106198	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACTCCTTTGTCCTCTTC	NA	False	NA	40	True	TTTAAA	-21	NA	99192974	99214895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99193155_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213363_99213463_99213603_99213782_99213967_99214030_99214123_99214262_99214341
ENSMUSG00000023008.19_1	chr15	-	4465	28	NIC	ENSMUSG00000023008.19	novel	4423	27	NA	NA	5	-3	combination_of_known_junctions	FALSE	canonical	2	4	junction_21	12.2696051230895	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGTCTTGCACCAAGC	NA	False	NA	-20	True	CATAAA	-14	NA	99268325	99215108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_99216254_99216798_99216899_99217011_99217136_99217442_99217536_99217865_99217968_99218233_99218395_99218916_99219047_99219135_99219217_99219314_99219384_99219511_99219747_99220075_99220279_99220483_99220609_99220692_99220762_99221200_99221481_99222621_99222724_99223121_99223272_99223523_99223635_99223734_99223810_99225395_99225490_99225701_99225779_99225938_99226048_99226974_99227058_99227160_99227314_99229867_99229952_99232734_99232812_99233568_99233650_99235510_99235595_99268057
ENSMUSG00000023008.19_3	chr15	-	4364	27	FSM	ENSMUSG00000023008.19	ENSMUST00000088233.13	4423	27	56	3	23	-3	multi-exon	FALSE	canonical	3	33	junction_13	7.49447528272084	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGTCTTGCACCAAGC	NA	False	NA	-20	True	CATAAA	-14	NA	99268307	99215108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99216254_99216798_99216899_99217011_99217136_99217442_99217536_99217865_99217968_99218233_99218395_99218916_99219047_99219135_99219217_99219314_99219384_99219511_99219747_99220075_99220279_99220483_99220609_99220692_99220762_99221200_99221481_99222621_99222724_99223121_99223272_99223523_99223635_99223734_99223810_99225395_99225490_99225701_99225779_99225938_99226048_99227160_99227314_99229867_99229952_99232734_99232812_99233568_99233650_99235510_99235595_99268057
ENSMUSG00000023009.15_0	chr15	-	4833	13	FSM	ENSMUSG00000023009.15	ENSMUST00000023747.14	4853	13	19	1	-17	-1	multi-exon	TRUE	canonical	3	12	junction_6	8.3877390676312	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTTGTGTGGCAGCCCC	NA	False	NA	-2	True	AATAAA	-24	NA	99355610	99319916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99320790_99321016_99321160_99321246_99321556_99321833_99321916_99321998_99322159_99323433_99326049_99327234_99327349_99330585_99330706_99331325_99331365_99331450_99331520_99331920_99332071_99333907_99333969_99355512
ENSMUSG00000023009.15_2	chr15	-	3691	6	ISM	ENSMUSG00000023009.15	ENSMUST00000023747.14	4853	13	30071	2	-3140	-2	3prime_fragment	FALSE	canonical	3	19	junction_2	7.31026675299883	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTTGTGTGGCAGCCC	NA	False	NA	-3	True	AATAAA	-23	NA	99325558	99319917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_99320790_99321016_99321160_99321246_99321556_99321833_99321916_99321998_99322159_99323433
ENSMUSG00000023009.15_5	chr15	-	4229	7	ISM	ENSMUSG00000023009.15	ENSMUST00000023747.14	4853	13	28347	2	-4864	-2	3prime_fragment	FALSE	canonical	3	12	junction_6	9.56846672960488	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTTGTGTGGCAGCCC	NA	False	NA	-3	True	AATAAA	-23	NA	99327282	99319917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_99320790_99321016_99321160_99321246_99321556_99321833_99321916_99321998_99322159_99323433_99326049_99327234
ENSMUSG00000023010.16_0	chr15	+	2344	10	FSM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	106	2	2	-2	multi-exon	FALSE	canonical	3	1506	junction_9	135.383406171756	2003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGTGTCTCAGTGTTAA	NA	False	NA	13	True	AATAAA	-18	NA	99290868	99307928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUSG00000023010.16_27	chr15	+	2437	10	FSM	ENSMUSG00000023010.16	ENSMUST00000159209.8	944	10	19	-1512	19	-2	multi-exon	FALSE	canonical	3	114	junction_1	555.512064964378	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGTGTCTCAGTGTTAA	NA	False	NA	13	True	AATAAA	-18	NA	99291118	99307928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99291265_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUSG00000023010.16_4	chr15	+	2557	11	FSM	ENSMUSG00000023010.16	ENSMUST00000161250.8	1148	11	2	-1411	2	-4	multi-exon	FALSE	canonical	3	52	junction_1	709.276455269735	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGGTGTCTCAGTGTT	NA	False	NA	11	True	AATAAA	-16	NA	99290868	99307926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99290922_99297537_99297753_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUSG00000023015.15_1	chr15	-	2883	17	FSM	ENSMUSG00000023015.15	ENSMUST00000023756.12	2933	17	42	8	-2	-8	multi-exon	FALSE	canonical	3	453	junction_16	66.1194172974173	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAAAGTGATGTTGGT	NA	False	NA	-9	True	AATAAA	-11	NA	99549495	99518385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
ENSMUSG00000023015.15_2	chr15	-	3011	18	FSM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	32	9	1	-8	multi-exon	FALSE	canonical	3	159	junction_16	174.822975218819	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAAAGTGATGTTGGT	NA	False	NA	-9	True	AATAAA	-11	NA	99549492	99518385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99549387
ENSMUSG00000023015.15_23	chr15	-	2992	18	NIC	ENSMUSG00000023015.15	novel	3052	18	NA	NA	-9	-8	combination_of_known_junctions	FALSE	canonical	3	24	junction_16	197.839524637143	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAAAGTGATGTTGGT	NA	False	NA	-9	True	AATAAA	-11	NA	99549502	99518385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541302_99541405_99549387
ENSMUSG00000023015.15_4	chr15	-	2878	17	NIC	ENSMUSG00000023015.15	novel	2933	17	NA	NA	-11	-8	combination_of_known_junctions	FALSE	canonical	3	35	junction_15	170.527387371501	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAAAGTGATGTTGGT	NA	False	NA	-9	True	AATAAA	-11	NA	99549504	99518385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537687_99540763_99540853_99549387
ENSMUSG00000023015.15_7	chr15	-	2875	17	NIC	ENSMUSG00000023015.15	novel	2933	17	NA	NA	2	-8	combination_of_known_junctions	FALSE	canonical	3	57	junction_16	157.969921484281	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAAAGTGATGTTGGT	NA	False	NA	-9	True	AATAAA	-11	NA	99549491	99518385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540849_99549387
ENSMUSG00000023017.11_1	chr15	+	3867	12	FSM	ENSMUSG00000023017.11	ENSMUST00000023758.9	4114	12	237	10	237	-10	multi-exon	FALSE	canonical	2	3	junction_5	2.84299923111125	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCAACCATCTCTTCAGT	NA	False	NA	-8	True	AATAAA	-5	NA	99568485	99598999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99568776_99569664_99570043_99570748_99570945_99592574_99592726_99593353_99593482_99594392_99594544_99594852_99594910_99595319_99595474_99595927_99596020_99596510_99596591_99596675_99596781_99596914
ENSMUSG00000023018.6_0	chr15	+	3147	13	FSM	ENSMUSG00000023018.6	ENSMUST00000023759.6	3307	13	152	8	-10	-8	multi-exon	FALSE	canonical	3	247	junction_12	25.0281785638153	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCAGGTCCCTGCTGT	7693	False	NA	18	True	AATAAA	-9	NA	99600161	99611864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99600380_99600986_99601175_99601471_99601515_99601618_99601742_99602211_99602335_99603507_99603625_99605191_99605294_99605520_99605683_99605765_99605864_99607161_99607298_99608973_99609097_99610039_99610142_99610252
ENSMUSG00000023018.6_24	chr15	+	1082	1	ISM	ENSMUSG00000023018.6	ENSMUST00000023759.6	3307	13	10780	1	5029	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCCCTGCTGTCTGGAGG	9412	False	NA	25	True	AATAAA	-16	NA	99610789	99611871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_99610800_99611900
ENSMUSG00000023020.4_1	chr15	+	585	2	FSM	ENSMUSG00000023020.4	ENSMUST00000023761.4	2090	2	21	1484	-9	478	multi-exon	FALSE	canonical	3	1440	junction_1	0	309	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTAGTGGTTCTGTG	NA	False	NA	20	True	ATTAAA	-15	NA	99623548	99625929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99623730_99625525
ENSMUSG00000023021.16_0	chr15	-	1943	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	153	0	14	0	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670329	99633472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
ENSMUSG00000023021.16_14	chr15	-	2032	11	FSM	ENSMUSG00000023021.16	ENSMUST00000109035.11	2775	11	32	711	32	0	multi-exon	FALSE	canonical	2	12	junction_1	103.150569557322	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670311	99633472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99634318_99635427_99635535_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
ENSMUSG00000023021.16_5	chr15	-	1841	10	NIC	ENSMUSG00000023021.16	novel	2096	10	NA	NA	25	0	intron_retention	FALSE	canonical	3	38	junction_2	75.4335616434901	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670318	99633472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_99634318_99636545_99636612_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
ENSMUSG00000023021.16_8	chr15	-	4882	8	ISM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	22123	0	-3408	0	3prime_fragment	FALSE	canonical	3	244	junction_2	12.5746749055231	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	3246	False	NA	-3	True	ATTAAA	-15	NA	99648359	99633472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917
ENSMUSG00000023022.15_0	chr15	-	4191	11	FSM	ENSMUSG00000023022.15	ENSMUST00000073691.5	4243	11	49	3	9	-3	multi-exon	FALSE	canonical	3	692	junction_4	128.449367456597	2133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTCCAGTGTCCACACT	7287	False	NA	-6	True	AATAAA	-12	NA	99773288	99676353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555_99741705_99773213
ENSMUSG00000023022.15_1	chr15	-	2130	1	ISM	ENSMUSG00000023022.15	ENSMUST00000109024.9	4109	8	39541	3	3371	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTCCAGTGTCCACACT	NA	False	NA	-6	True	AATAAA	-12	NA	99678483	99676353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_99676400_99678500
ENSMUSG00000023025.17_2	chr15	+	6445	16	NIC	ENSMUSG00000023025.17	novel	6530	16	NA	NA	6	-25	combination_of_known_junctions	FALSE	canonical	3	302	junction_1	90.2603641325102	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAAATTATTGAA	NA	False	NA	NA	False	ATTAAA	-14	NA	99870723	99914214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99870865_99882797_99882937_99883918_99884075_99885283_99885360_99888173_99888311_99889605_99889710_99891203_99891315_99892544_99892599_99894347_99894558_99895253_99895358_99898716_99898930_99899682_99899732_99903121_99903284_99905487_99905610_99908172_99908342_99909716
ENSMUSG00000023025.17_3	chr15	+	6443	16	FSM	ENSMUSG00000023025.17	ENSMUST00000100206.4	6530	16	62	25	5	-25	multi-exon	FALSE	canonical	3	323	junction_1	85.9835643209406	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAAATTATTGAA	NA	False	NA	NA	False	ATTAAA	-14	NA	99870722	99914214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99870865_99882800_99882937_99883918_99884075_99885283_99885360_99888173_99888311_99889605_99889710_99891203_99891315_99892544_99892599_99894347_99894558_99895253_99895358_99898716_99898930_99899682_99899732_99903121_99903284_99905487_99905610_99908172_99908342_99909716
ENSMUSG00000023025.17_60	chr15	+	3346	1	ISM	ENSMUSG00000023025.17	ENSMUST00000100206.4	6530	16	40208	25	9731	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAAATTATTGAA	7922	False	NA	NA	False	ATTAAA	-14	NA	99910868	99914214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_99910900_99914200
ENSMUSG00000023026.17_0	chr15	+	8830	38	NIC	ENSMUSG00000023026.17	novel	8914	38	NA	NA	78	-3	combination_of_known_junctions	FALSE	canonical	3	37	junction_7	7.50183809957063	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTATGTTTAATTCTTA	4935	False	NA	6	True	AATAAA	-10	NA	99936622	100117351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99936791_100013725_100013798_100029782_100029909_100039902_100040029_100049031_100049245_100052037_100052188_100052914_100053035_100055050_100055249_100055757_100055850_100058322_100058434_100059858_100059983_100060559_100060670_100065736_100065840_100067147_100067213_100069000_100069095_100069483_100069604_100071097_100071213_100072307_100072448_100073081_100073219_100076322_100076404_100079189_100079318_100080887_100081003_100084021_100084224_100087912_100088023_100088136_100088218_100088867_100088992_100091720_100091843_100093671_100093784_100096821_100096932_100097340_100097472_100100068_100100238_100101012_100101184_100102963_100103026_100104277_100104336_100105638_100105714_100107459_100107638_100109864_100109989_100113058
ENSMUSG00000023026.17_19	chr15	+	4886	7	ISM	ENSMUSG00000023026.17	ENSMUST00000023768.14	4320	33	48814	-3807	74	0	3prime_fragment	FALSE	canonical	3	50	junction_5	4.6785562825394	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGTTTAATTCTTAAAC	NA	False	NA	9	True	AATAAA	-13	NA	100101090	100117354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100101184_100102963_100103026_100104277_100104336_100105638_100105714_100107459_100107638_100109864_100109989_100113058
ENSMUSG00000023026.17_2	chr15	+	8842	38	FSM	ENSMUSG00000023026.17	ENSMUST00000100203.10	8914	38	65	7	65	-7	multi-exon	FALSE	canonical	2	4	junction_7	10.5011043281662	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTTGATTATGTTTAATT	4922	False	NA	2	True	AATAAA	-6	NA	99936609	100117347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99936791_100013725_100013798_100029782_100029909_100039902_100040029_100049031_100049245_100052037_100052188_100052914_100053038_100055050_100055249_100055757_100055850_100058322_100058434_100059858_100059983_100060559_100060670_100065736_100065840_100067147_100067213_100069000_100069095_100069483_100069604_100071097_100071213_100072307_100072448_100073081_100073219_100076322_100076404_100079189_100079318_100080887_100081003_100084021_100084224_100087912_100088023_100088136_100088218_100088867_100088992_100091720_100091843_100093671_100093784_100096821_100096932_100097340_100097472_100100068_100100238_100101012_100101184_100102963_100103026_100104277_100104336_100105638_100105714_100107459_100107638_100109864_100109989_100113058
ENSMUSG00000023026.17_20	chr15	+	4792	6	ISM	ENSMUSG00000023026.17	ENSMUST00000023768.14	4320	33	50688	-3807	1948	0	3prime_fragment	FALSE	canonical	3	50	junction_4	5.11468474101777	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGTTTAATTCTTAAAC	NA	False	NA	9	True	AATAAA	-13	NA	100102964	100117354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100103026_100104277_100104336_100105638_100105714_100107459_100107638_100109864_100109989_100113058
ENSMUSG00000023026.17_22	chr15	+	2398	1	ISM	ENSMUSG00000023026.17	ENSMUST00000100203.10	8914	38	178412	0	13940	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGTTTAATTCTTAAAC	NA	False	NA	9	True	AATAAA	-13	NA	100114956	100117354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100115000_100117400
ENSMUSG00000023026.17_32	chr15	+	5093	8	ISM	ENSMUSG00000023026.17	ENSMUST00000023768.14	4320	33	47832	-3807	-908	0	3prime_fragment	FALSE	canonical	3	50	junction_6	6.45233702322069	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGTTTAATTCTTAAAC	NA	False	NA	9	True	AATAAA	-13	NA	100100108	100117354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100100238_100101012_100101184_100102963_100103026_100104277_100104336_100105638_100105714_100107459_100107638_100109864_100109989_100113058
ENSMUSG00000023026.17_34	chr15	+	8652	37	NIC	ENSMUSG00000023026.17	novel	8914	38	NA	NA	-38549	-11	combination_of_known_junctions	FALSE	canonical	3	37	junction_6	7.58587665938209	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGCTTGATTATGTTT	8575	False	NA	-2	True	AATAAA	-2	NA	100013727	100117343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_100013798_100029782_100029909_100039902_100040029_100049031_100049245_100052037_100052188_100052914_100053035_100055050_100055249_100055757_100055850_100058322_100058434_100059858_100059983_100060559_100060670_100065736_100065840_100067147_100067213_100069000_100069095_100069483_100069604_100071097_100071213_100072307_100072448_100073081_100073219_100076322_100076404_100079189_100079318_100080887_100081003_100084021_100084224_100087912_100088023_100088136_100088218_100088867_100088992_100091720_100091843_100093671_100093784_100096821_100096932_100097340_100097472_100100068_100100238_100101012_100101184_100102963_100103026_100104277_100104336_100105638_100105714_100107459_100107638_100109864_100109989_100113058
ENSMUSG00000023027.14_0	chr15	+	2281	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-16	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	110.684143362257	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGATTAAGTTTTCGGAA	NA	False	NA	7	True	ATTAAA	-10	NA	100125735	100159119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158179_100158220
ENSMUSG00000023027.14_1	chr15	+	2325	7	FSM	ENSMUSG00000023027.14	ENSMUST00000023769.11	2365	7	36	4	-16	-4	multi-exon	FALSE	canonical	3	255	junction_1	32.1334024895521	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTAAGTTTTCGGAATG	NA	False	NA	9	True	ATTAAA	-12	NA	100125735	100159121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695
ENSMUSG00000023030.17_16	chr15	-	2124	17	FSM	ENSMUSG00000023030.17	ENSMUST00000023774.12	3025	17	36	865	-17	-865	multi-exon	FALSE	canonical	1	67	junction_1	39.2515923243886	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATGCCTTTCAGGTGAG	NA	False	NA	-9	True	TATAAA	-16	NA	100320900	100286643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
ENSMUSG00000023030.17_19	chr15	-	4028	16	FSM	ENSMUSG00000023030.17	ENSMUST00000138843.8	4415	16	-14	401	-14	-401	multi-exon	FALSE	canonical	1	68	junction_8	31.7016648704063	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGATTGTCACTGAAAAC	NA	False	NA	NA	False	ATTAAA	-15	NA	100320897	100290844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
ENSMUSG00000023030.17_2	chr15	-	2834	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	-14	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	53.8380244062904	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAGCTTTTGTCTAGGGG	NA	False	NA	NA	False	AATAAA	-17	NA	100320897	100285783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_100286361_100286507_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
ENSMUSG00000023030.17_20	chr15	-	2167	1	ISM	ENSMUSG00000023030.17	ENSMUST00000138843.8	4415	16	28177	96	8418	-96	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTTTGGTTTTCTTTC	NA	False	NA	-16	True	ATTAAA	-16	NA	100292706	100290539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100290500_100292700
ENSMUSG00000023031.9_0	chr15	-	722	4	FSM	ENSMUSG00000023031.9	ENSMUST00000229235.2	456	4	-67	-199	-67	0	multi-exon	FALSE	canonical	3	11	junction_3	10.8730042868667	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGTGCTTGCATTTA	5887	False	NA	-2	True	AATAAA	-16	NA	100581067	100572305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580934
ENSMUSG00000023031.9_1	chr15	-	1064	6	ISM	ENSMUSG00000023031.9	ENSMUST00000023775.9	1108	8	2577	3	20	1	3prime_fragment	FALSE	canonical	2	9	junction_4	10.6695829346793	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGCTTGCATTTAT	8462	False	NA	-1	True	AATAAA	-17	NA	100583225	100572304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767_100580905_100582460_100582587_100583014
ENSMUSG00000023031.9_2	chr15	-	557	3	FSM	ENSMUSG00000023031.9	ENSMUST00000230740.2	887	3	327	3	327	0	multi-exon	FALSE	canonical	3	29	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGTGCTTGCATTTA	7817	False	NA	-2	True	AATAAA	-16	NA	100579137	100572305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100572599_100573204_100573355_100579023
ENSMUSG00000023031.9_3	chr15	-	736	4	ISM	ENSMUSG00000023031.9	ENSMUST00000023775.9	1108	8	4888	4	86	0	3prime_fragment	FALSE	canonical	2	12	junction_3	10.4243305140746	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGTGCTTGCATTTA	6040	False	NA	-2	True	AATAAA	-16	NA	100580914	100572305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767
ENSMUSG00000023032.13_0	chr15	+	3739	25	FSM	ENSMUSG00000023032.13	ENSMUST00000023776.13	11790	25	18	8033	18	0	multi-exon	FALSE	canonical	3	11	junction_2	8.52355804031783	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATTTTCTCTGATACTC	NA	False	NA	11	True	ATTAAA	-19	NA	100659645	100713816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_100659856_100672510_100672593_100680826_100680977_100681667_100681804_100682595_100682757_100685044_100685234_100686040_100686127_100686890_100687049_100687715_100687804_100688786_100688934_100689477_100689579_100693643_100693819_100694385_100694520_100695873_100696120_100697527_100697634_100698360_100698523_100701115_100701230_100704130_100704293_100705081_100705334_100707175_100707245_100708474_100708649_100709423_100709556_100710987_100711080_100712330_100712427_100713499
ENSMUSG00000023032.13_11	chr15	+	3627	24	NNC	ENSMUSG00000023032.13	novel	374	2	NA	NA	-992	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	9.13643695054198	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATTTTCTCTGATACTC	3523	False	NA	11	True	ATTAAA	-19	NA	100678142	100713816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_100678323_100680826_100680977_100681667_100681804_100682595_100682757_100685044_100685234_100686040_100686127_100686890_100687049_100687715_100687804_100688786_100688934_100689477_100689579_100693643_100693819_100694385_100694520_100695873_100696120_100697527_100697634_100698360_100698523_100701115_100701230_100704130_100704293_100705081_100705334_100707175_100707245_100708474_100708649_100709423_100709556_100710987_100711080_100712330_100712427_100713499
ENSMUSG00000023032.13_12	chr15	+	3771	24	FSM	ENSMUSG00000023032.13	ENSMUST00000162049.2	3532	24	-239	0	-239	0	multi-exon	FALSE	canonical	3	7	junction_1	9.00556433744809	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATTTTCTCTGATACTC	4276	False	NA	11	True	ATTAAA	-19	NA	100678895	100713816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_100679220_100680826_100680977_100681667_100681804_100682595_100682757_100685044_100685234_100686040_100686127_100686890_100687049_100687715_100687804_100688786_100688934_100689477_100689579_100693643_100693819_100694385_100694520_100695873_100696120_100697527_100697634_100698360_100698523_100701115_100701230_100704130_100704293_100705081_100705334_100707175_100707245_100708474_100708649_100709423_100709556_100710987_100711080_100712330_100712427_100713499
ENSMUSG00000023032.13_35	chr15	+	3853	7	NIC	ENSMUSG00000023032.13	novel	3532	24	NA	NA	82	0	intron_retention	FALSE	canonical	3	30	junction_2	9.0921211313239	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATTTTCTCTGATACTC	4898	False	NA	11	True	ATTAAA	-19	NA	100700710	100713816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_100701230_100704130_100705334_100707175_100707245_100708474_100708649_100709423_100709556_100710987_100712427_100713499
ENSMUSG00000023032.13_39	chr15	+	2346	1	ISM	ENSMUSG00000023032.13	ENSMUST00000023776.13	11790	25	55410	4466	2803	3472	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTTGCCTCATCCATGA	NA	False	NA	NA	False	NA	NA	NA	100715037	100717383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100715000_100717400
ENSMUSG00000023033.15_2	chr15	+	3263	15	ISM	ENSMUSG00000023033.15	ENSMUST00000201549.4	7120	27	-2	29958	-2	671	5prime_fragment	FALSE	canonical	0	0	junction_3	20.6487880753228	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGGTTTTCTTCGTTT	6967	False	NA	NA	False	AATAAA	-17	NA	100768823	100909616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100768950_100834151_100834482_100853290_100853410_100854909_100855000_100855341_100855471_100857220_100857313_100866901_100867124_100868084_100868149_100869400_100869543_100870634_100870842_100872303_100872598_100881569_100881927_100899914_100900048_100905933_100906173_100908897
ENSMUSG00000023033.15_26	chr15	+	2229	1	NIC	ENSMUSG00000023033.15	novel	11436	27	NA	NA	2485	332	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100857449	100859678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_100857400_100859700
ENSMUSG00000023033.15_4	chr15	+	1876	11	ISM	ENSMUSG00000023033.15	ENSMUST00000201549.4	7120	27	-14	66928	-14	-2	5prime_fragment	FALSE	canonical	0	0	junction_3	21.4198506063885	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTGCTTGGCCTTGCAG	6955	False	NA	NA	False	AATAAA	-22	NA	100768811	100872646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100768950_100834151_100834482_100853290_100853410_100854909_100855000_100855341_100855471_100857220_100857313_100866901_100867124_100868084_100868149_100869400_100869543_100870634_100870842_100872303
ENSMUSG00000023033.15_5	chr15	+	1114	7	NIC	ENSMUSG00000023033.15	novel	7120	27	NA	NA	-4	132	combination_of_known_junctions	TRUE	canonical	0	0	junction_3	22.1560124771785	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAAAAAAAGCACAT	6965	False	NA	NA	False	NA	NA	NA	100768821	100857801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_100768950_100834151_100834482_100853290_100853410_100854909_100855000_100855341_100855471_100857220_100857313_100857575
ENSMUSG00000023034.8_1	chr15	+	2583	8	FSM	ENSMUSG00000023034.8	ENSMUST00000228985.2	2553	8	-35	5	-35	-5	multi-exon	FALSE	canonical	3	104	junction_1	37.8897433754997	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATTGAGTCTTTTTTTC	482	False	NA	14	True	AATAAA	-16	NA	101152114	101172671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_101152233_101156188_101156308_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
ENSMUSG00000023034.8_11	chr15	+	2469	7	FSM	ENSMUSG00000023034.8	ENSMUST00000023779.8	2477	7	3	5	3	-5	multi-exon	FALSE	canonical	3	74	junction_1	46.5895195653844	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATTGAGTCTTTTTTTC	NA	False	NA	14	True	AATAAA	-16	NA	101164729	101172671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_101164853_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
ENSMUSG00000023034.8_16	chr15	+	1670	6	ISM	ENSMUSG00000023034.8	ENSMUST00000023779.8	2477	7	3913	5	-2102	-5	3prime_fragment	FALSE	canonical	3	170	junction_2	16.6180624622728	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATTGAGTCTTTTTTTC	NA	False	NA	14	True	AATAAA	-16	NA	101168639	101172671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
ENSMUSG00000023036.15_1	chr18	+	4681	4	FSM	ENSMUSG00000023036.15	ENSMUST00000066140.13	5024	4	340	3	18	-3	multi-exon	FALSE	canonical	1	1	junction_1	104.233711757121	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTGACCGCGTCTGTT	NA	False	NA	14	True	AATAAA	-17	NA	37948471	37974923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37951037_37958073_37958133_37966317_37966407_37972955
ENSMUSG00000023039.18_0	chr15	+	1549	9	FSM	ENSMUSG00000023039.18	ENSMUST00000068904.9	4094	9	24	2521	-23	3	multi-exon	FALSE	canonical	3	14	junction_1	16.0078105935821	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGCATCGGCTAGCTAGG	NA	False	NA	9	True	AATAAA	-16	NA	101310306	101325673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_101310661_101311849_101312062_101314101_101314163_101316198_101316295_101317383_101317549_101318354_101318481_101321150_101321372_101324969_101325005_101325394
ENSMUSG00000023039.18_2	chr15	+	1008	8	NNC	ENSMUSG00000023039.18	novel	3563	8	NA	NA	2701	3	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	10.6885404971485	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGCATCGGCTAGCTAGG	NA	False	NA	9	True	AATAAA	-16	NA	101313030	101325673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_101313056_101314101_101314163_101316198_101316295_101317383_101317549_101318354_101318481_101321150_101321372_101324969_101325005_101325394
ENSMUSG00000023043.8_0	chr15	+	1378	7	FSM	ENSMUSG00000023043.8	ENSMUST00000023803.8	1437	7	48	11	48	-11	multi-exon	FALSE	canonical	3	28	junction_3	6.13731754650732	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGACATCACTTTGTGTC	NA	False	NA	1	True	AATAAA	-13	NA	101936662	101940451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_101937110_101937900_101937984_101938257_101938415_101939053_101939219_101939329_101939456_101939730_101939955_101940275
ENSMUSG00000023044.3_14	chr15	-	2260	15	FSM	ENSMUSG00000023044.3	ENSMUST00000023805.3	2279	15	15	4	15	-4	multi-exon	FALSE	canonical	3	91	junction_14	14.588400480225	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATATTTTGGTATGTTTT	2744	False	NA	NA	False	AATAAA	-13	NA	102097478	102085437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321
ENSMUSG00000023044.3_16	chr15	-	2277	15	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	24	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	34.0377941202339	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATATTTTGGTATGTTTT	6656	False	NA	NA	False	AATAAA	-13	NA	102112304	102085437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102112130
ENSMUSG00000023044.3_18	chr15	-	2294	16	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	22	junction_15	28.5420547418873	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATATTTTGGTATGTTTT	6272	False	NA	NA	False	AATAAA	-13	NA	102112688	102085437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102112573
ENSMUSG00000023044.3_3	chr15	-	2622	18	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	13	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	39.6618928436936	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTTGGTATGTTTTAAA	6645	False	NA	NA	False	AATAAA	-16	NA	102112315	102085434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102110878_102111010_102111571_102111696_102112130
ENSMUSG00000023044.3_31	chr15	-	383	1	ISM	ENSMUSG00000023044.3	ENSMUST00000023805.3	2279	15	11673	4	1634	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATATTTTGGTATGTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	102085820	102085437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_102085400_102085800
ENSMUSG00000023044.3_33	chr15	-	2211	15	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	2	2	junction_14	33.5556193779333	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATATTTTGGTATGTTTT	6279	False	NA	NA	False	AATAAA	-13	NA	102112681	102085437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102112573
ENSMUSG00000023044.3_5	chr15	-	2549	18	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	20	junction_17	36.7303839792948	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATTTTGGTATGTTTTA	6273	False	NA	NA	False	AATAAA	-14	NA	102112687	102085436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102110878_102111010_102111571_102111696_102112573
ENSMUSG00000023044.3_6	chr15	-	2488	17	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	13	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	39.7570257155889	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATATTTTGGTATGTTTT	6645	False	NA	NA	False	AATAAA	-13	NA	102112315	102085437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102111571_102111696_102112130
ENSMUSG00000023044.3_8	chr15	-	2368	16	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	9	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	33.4241429708128	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATATTTTGGTATGTTTT	6641	False	NA	NA	False	AATAAA	-13	NA	102112319	102085437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102112130
ENSMUSG00000023045.14_0	chr15	+	2201	15	FSM	ENSMUSG00000023045.14	ENSMUST00000023806.14	2208	15	-7	14	-7	-14	multi-exon	FALSE	canonical	3	11	junction_10	3.76408917893011	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACATAAAATAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	102058953	102071890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102059148_102059540_102059597_102061582_102061720_102062395_102062456_102062695_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
ENSMUSG00000023045.14_1	chr15	+	1912	12	NIC	ENSMUSG00000023045.14	novel	2208	15	NA	NA	-18	-9	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	5.85923019793528	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAATAAAATCTTGT	NA	False	NA	NA	False	NA	NA	NA	102058942	102071895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102059148_102059540_102059597_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
ENSMUSG00000023045.14_10	chr15	+	184	1	ISM	ENSMUSG00000023045.14	ENSMUST00000023806.14	2208	15	12754	6	12164	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATAAAATCTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	102071714	102071898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102071700_102071900
ENSMUSG00000023045.14_11	chr15	+	2010	11	NIC	ENSMUSG00000023045.14	novel	2208	15	NA	NA	2894	-9	intron_retention	FALSE	canonical	3	11	junction_6	3.84837628097877	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAATAAAATCTTGT	NA	False	NA	NA	False	NA	NA	NA	102062444	102071895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
ENSMUSG00000023045.14_5	chr15	+	2135	14	ISM	ENSMUSG00000023045.14	ENSMUST00000023806.14	2208	15	457	9	-133	-9	3prime_fragment	FALSE	canonical	3	11	junction_9	3.75113395084203	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAATAAAATCTTGT	NA	False	NA	NA	False	NA	NA	NA	102059417	102071895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102059597_102061582_102061720_102062395_102062456_102062695_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
ENSMUSG00000023045.14_6	chr15	+	2517	13	NIC	ENSMUSG00000023045.14	novel	2208	15	NA	NA	-151	-9	intron_retention	FALSE	canonical	3	11	junction_9	3.90423559170749	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAATAAAATCTTGT	NA	False	NA	NA	False	NA	NA	NA	102059399	102071895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102059597_102061582_102061720_102062395_102062456_102062695_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069586_102070443_102070580_102070988_102071135_102071331
ENSMUSG00000023047.12_10	chr15	+	1465	3	NIC	ENSMUSG00000023047.12	novel	1938	11	NA	NA	-176	0	intron_retention	FALSE	canonical	3	123	junction_1	16	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360417	102363065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102361328_102361466_102361604_102362647
ENSMUSG00000023047.12_2	chr15	+	1157	5	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	6616	0	-176	0	3prime_fragment	FALSE	canonical	3	32	junction_1	46.916814683011	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360417	102363065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
ENSMUSG00000023047.12_5	chr15	+	835	4	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	7061	0	105	0	3prime_fragment	FALSE	canonical	3	123	junction_2	13.3666251038423	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360862	102363065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102360995_102361179_102361328_102361466_102361604_102362647
ENSMUSG00000023047.12_6	chr15	+	640	2	ISM	ENSMUSG00000023047.12	ENSMUST00000162893.2	611	3	179	-85	15	0	3prime_fragment	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360772	102363065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102360995_102362647
ENSMUSG00000023047.12_7	chr15	+	723	3	NIC	ENSMUSG00000023047.12	novel	1938	11	NA	NA	69	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	69.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360826	102363065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102360995_102361466_102361604_102362647
ENSMUSG00000023047.12_8	chr15	+	704	3	ISM	ENSMUSG00000023047.12	ENSMUST00000229278.2	1735	10	6986	3	99	0	3prime_fragment	FALSE	canonical	1	2	junction_2	65.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360856	102363065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102360995_102361179_102361328_102362647
ENSMUSG00000023047.12_9	chr15	+	2020	2	FSM	ENSMUSG00000023047.12	ENSMUST00000161376.2	364	2	101	-1757	101	-2	multi-exon	FALSE	canonical	3	133	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACTCTTCATCAATGTG	NA	False	NA	11	True	AATAAA	-11	NA	102360858	102363063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102360995_102361179
ENSMUSG00000023048.14_1	chr15	+	1042	4	FSM	ENSMUSG00000023048.14	ENSMUST00000164957.8	1055	4	14	-1	14	1	multi-exon	FALSE	canonical	3	427	junction_1	130.244215056008	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACCTGTGCCATTACCT	2419	False	NA	17	True	AATAAA	-20	NA	102367650	102371218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102367691_102368542_102368582_102368804_102369155_102370605
ENSMUSG00000023048.14_2	chr15	+	1025	3	FSM	ENSMUSG00000023048.14	ENSMUST00000164688.2	1020	3	2	-7	2	1	multi-exon	FALSE	canonical	3	623	junction_2	60	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACCTGTGCCATTACCT	3288	False	NA	17	True	AATAAA	-20	NA	102368519	102371218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102368582_102368804_102369155_102370605
ENSMUSG00000023048.14_3	chr15	+	1160	5	FSM	ENSMUSG00000023048.14	ENSMUST00000023810.12	1224	5	41	23	14	1	multi-exon	FALSE	canonical	3	129	junction_1	259.364969685576	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACCTGTGCCATTACCT	2419	False	NA	17	True	AATAAA	-20	NA	102367650	102371218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102367691_102367898_102368017_102368542_102368582_102368804_102369155_102370605
ENSMUSG00000023048.14_4	chr15	+	2117	2	NIC	ENSMUSG00000023048.14	novel	1020	3	NA	NA	14	1	intron_retention	FALSE	canonical	3	623	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACCTGTGCCATTACCT	2419	False	NA	17	True	AATAAA	-20	NA	102367650	102371218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102369155_102370605
ENSMUSG00000023048.14_5	chr15	+	1121	4	FSM	ENSMUSG00000023048.14	ENSMUST00000171245.8	1353	4	230	2	230	0	multi-exon	FALSE	canonical	3	222	junction_1	222.770933671538	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCACCTGTGCCATTACC	2665	False	NA	16	True	AATAAA	-19	NA	102367896	102371217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102368017_102368542_102368582_102368804_102369155_102370605
ENSMUSG00000023050.10_13	chr15	-	3735	17	NIC	ENSMUSG00000023050.10	novel	4318	16	NA	NA	29	-422	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	18.6906351885108	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTGTCGAGGGTTTTCT	NA	False	NA	-4	True	AATATA	-17	NA	102419106	102407881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102416762_102416899_102417724_102417814_102418353_102418441_102419018
ENSMUSG00000023050.10_24	chr15	-	3553	16	FSM	ENSMUSG00000023050.10	ENSMUST00000169377.8	4210	16	235	422	7	-422	multi-exon	FALSE	canonical	2	4	junction_15	20.3004105048806	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTGTCGAGGGTTTTCT	NA	False	NA	-4	True	AATATA	-17	NA	102425264	102407881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102417724_102417814_102418353_102418441_102425222
ENSMUSG00000023050.10_39	chr15	-	3762	17	NIC	ENSMUSG00000023050.10	novel	4318	16	NA	NA	23	-420	combination_of_known_junctions	FALSE	canonical	3	13	junction_15	21.6347521363199	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTCGAGGGTTTTCTTG	NA	False	NA	-2	True	AATATA	-19	NA	102419112	102407879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102416762_102416899_102417724_102417833_102418353_102418441_102419018
ENSMUSG00000023050.10_4	chr15	-	3633	16	FSM	ENSMUSG00000023050.10	ENSMUST00000171565.8	4318	16	14	671	14	-422	multi-exon	FALSE	canonical	3	13	junction_14	18.4094178796253	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTGTCGAGGGTTTTCT	NA	False	NA	-4	True	AATATA	-17	NA	102419121	102407881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102417724_102417833_102418353_102418441_102419018
ENSMUSG00000023050.10_8	chr15	-	3439	14	NIC	ENSMUSG00000023050.10	novel	4318	16	NA	NA	15	-420	combination_of_known_splicesites	FALSE	canonical	2	3	junction_13	20.1934431915163	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTCGAGGGTTTTCTTG	NA	False	NA	-2	True	AATATA	-19	NA	102419120	102407879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102419018
ENSMUSG00000023050.10_9	chr15	-	3598	16	NIC	ENSMUSG00000023050.10	novel	4318	16	NA	NA	31	-421	combination_of_known_junctions	FALSE	canonical	3	33	junction_13	14.0437411919569	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGTCGAGGGTTTTCTT	NA	False	NA	-3	True	AATATA	-18	NA	102419104	102407880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102417724_102417814_102418353_102418441_102419018
ENSMUSG00000023051.12_0	chr15	+	1540	9	FSM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	-19	2	1	0	multi-exon	FALSE	canonical	3	312	junction_3	28.7706447616316	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102426874	102432109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_11	chr15	+	1433	8	NIC	ENSMUSG00000023051.12	novel	1523	9	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	125.715584408876	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102426878	102432109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102427038_102427556_102427727_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_14	chr15	+	1544	9	FSM	ENSMUSG00000023051.12	ENSMUST00000154948.8	951	9	-138	-455	-8	0	multi-exon	TRUE	canonical	3	32	junction_3	117.676463237132	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102426853	102432109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429572_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_15	chr15	+	2231	7	NIC	ENSMUSG00000023051.12	novel	1819	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	365	junction_3	15.4209453522005	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102426860	102432109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102427038_102427556_102427727_102428909_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
ENSMUSG00000023051.12_33	chr15	+	1723	8	ISM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	316	3	-24	-1	3prime_fragment	FALSE	canonical	3	312	junction_2	30.5647522750088	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCCCTTGTTCTTTTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	102427209	102432108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_34	chr15	+	1456	9	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	96.5083383703191	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102427200	102432109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_8	chr15	+	1677	8	ISM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	-22	2	-2	0	intron_retention	FALSE	canonical	3	312	junction_3	28	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102426871	102432109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
ENSMUSG00000023055.11_0	chr15	-	2737	15	FSM	ENSMUSG00000023055.11	ENSMUST00000023818.11	2824	15	84	3	37	-3	multi-exon	FALSE	canonical	3	88	junction_14	14.2851785613836	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCATTGTCATGACGTAT	NA	False	NA	-9	True	AATATA	-16	NA	102630529	102615214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
ENSMUSG00000023055.11_28	chr15	-	2929	14	FSM	ENSMUSG00000023055.11	ENSMUST00000171838.2	2968	14	46	-7	46	7	multi-exon	FALSE	canonical	3	88	junction_13	14.4115338424578	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGTCTGTCTTTCCTCA	NA	False	NA	NA	False	AATAAA	-24	NA	102630520	102616012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
ENSMUSG00000023055.11_4	chr15	-	2545	16	NNC	ENSMUSG00000023055.11	novel	2824	15	NA	NA	37	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.0315389771043	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATTGTCATGACGTATG	NA	False	NA	-8	True	AATATA	-17	NA	102630529	102615213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_102615225_102615417_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
ENSMUSG00000023064.5_0	chr14	-	775	5	FSM	ENSMUSG00000023064.5	ENSMUST00000023826.5	852	5	74	3	74	-3	multi-exon	FALSE	canonical	3	10	junction_4	6.72681202353685	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCAGTGCTTCTTCTTTG	6028	False	NA	NA	False	AATAAA	-16	NA	34096672	34092233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_34092523_34092813_34092874_34095212_34095341_34095627_34095670_34096416
ENSMUSG00000023066.11_0	chr18	+	7041	49	FSM	ENSMUSG00000023066.11	ENSMUST00000023828.9	7271	49	222	8	204	-5	multi-exon	TRUE	canonical	3	17	junction_17	5.75166038828982	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTATATTTTTAAAAGTG	NA	False	NA	NA	False	AATAAA	-13	NA	88990135	89149132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_88990203_88990495_88990684_88991641_88991820_88992453_88992544_88993811_88993903_88995796_88995912_88997689_88997841_89001933_89002100_89004017_89004200_89007558_89007675_89013640_89013812_89027365_89027579_89028975_89029089_89031095_89031223_89032665_89032792_89033248_89033366_89035302_89035443_89038220_89038393_89039787_89039888_89045082_89045172_89047015_89047134_89055114_89055212_89056010_89056080_89060259_89060449_89060982_89061223_89064139_89064285_89066489_89066645_89071643_89071864_89078484_89078614_89078875_89078987_89082224_89082384_89083970_89084043_89091668_89091859_89093550_89093643_89100017_89100109_89108550_89108741_89109939_89110031_89113616_89113771_89119754_89119893_89121967_89122186_89126172_89126279_89127374_89127473_89128797_89128876_89131448_89131576_89133568_89133769_89138955_89139224_89146879_89146984_89147873_89147944_89148722
ENSMUSG00000023066.11_1	chr18	+	1829	13	FSM	ENSMUSG00000023066.11	ENSMUST00000235272.2	3260	13	210	1221	210	-1221	multi-exon	FALSE	canonical	3	19	junction_9	4.44331582892276	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGTAATATTTCCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	88990141	89029082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_88990203_88990495_88990684_88991641_88991820_88992453_88992544_88993811_88993903_88995796_88995912_88997689_88997841_89001933_89002100_89004017_89004200_89007558_89007675_89013640_89013812_89027365_89027579_89028975
ENSMUSG00000023066.11_10	chr18	+	6111	42	ISM	ENSMUSG00000023066.11	ENSMUST00000023828.9	7271	49	12068	10	-2036	-7	3prime_fragment	FALSE	canonical	3	17	junction_10	5.90576403020708	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACTATATTTTTAAAAG	7374	False	NA	NA	False	AATAAA	-11	NA	89001981	89149130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_89002100_89004017_89004200_89007558_89007675_89013640_89013812_89027365_89027579_89028975_89029089_89031095_89031223_89032665_89032792_89033248_89033366_89035302_89035443_89038220_89038393_89039787_89039888_89045082_89045172_89047015_89047134_89055114_89055212_89056010_89056080_89060259_89060449_89060982_89061223_89064139_89064285_89066489_89066645_89071643_89071864_89078484_89078614_89078875_89078987_89082224_89082384_89083970_89084043_89091668_89091859_89093550_89093643_89100017_89100109_89108550_89108741_89109939_89110031_89113616_89113771_89119754_89119893_89121967_89122186_89126172_89126279_89127374_89127473_89128797_89128876_89131448_89131576_89133568_89133769_89138955_89139224_89146879_89146984_89147873_89147944_89148722
ENSMUSG00000023066.11_12	chr18	+	5515	38	ISM	ENSMUSG00000023066.11	ENSMUST00000023828.9	7271	49	37461	10	-3721	-7	3prime_fragment	FALSE	canonical	3	17	junction_6	5.98354207378219	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACTATATTTTTAAAAG	NA	False	NA	NA	False	AATAAA	-11	NA	89027374	89149130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_89027579_89028975_89029089_89031095_89031223_89032665_89032792_89033248_89033366_89035302_89035443_89038220_89038393_89039787_89039888_89045082_89045172_89047015_89047134_89055114_89055212_89056010_89056080_89060259_89060449_89060982_89061223_89064139_89064285_89066489_89066645_89071643_89071864_89078484_89078614_89078875_89078987_89082224_89082384_89083970_89084043_89091668_89091859_89093550_89093643_89100017_89100109_89108550_89108741_89109939_89110031_89113616_89113771_89119754_89119893_89121967_89122186_89126172_89126279_89127374_89127473_89128797_89128876_89131448_89131576_89133568_89133769_89138955_89139224_89146879_89146984_89147873_89147944_89148722
ENSMUSG00000023066.11_17	chr18	+	2611	17	ISM	ENSMUSG00000023066.11	ENSMUST00000023828.9	7271	49	101774	3	9350	0	3prime_fragment	FALSE	canonical	3	25	junction_14	5.06789835632089	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTTAAAAGTGTATTT	NA	False	NA	NA	False	AATAAA	-18	NA	89091687	89149137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_89091859_89093550_89093643_89100017_89100109_89108550_89108741_89109939_89110031_89113616_89113771_89119754_89119893_89121967_89122186_89126172_89126279_89127374_89127473_89128797_89128876_89131448_89131576_89133568_89133769_89138955_89139224_89146879_89146984_89147873_89147944_89148722
ENSMUSG00000023066.11_19	chr18	+	6778	3	ISM	ENSMUSG00000023066.11	ENSMUST00000236676.2	2844	20	58345	8	14452	-8	3prime_fragment	FALSE	canonical	3	37	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAACTATATTTTTAAAA	NA	False	NA	NA	False	AATAAA	-10	NA	89140682	89149129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_89146984_89147873_89147944_89148722
ENSMUSG00000023066.11_24	chr18	+	4497	31	ISM	ENSMUSG00000023066.11	ENSMUST00000023828.9	7271	49	49893	10	-3	-7	3prime_fragment	FALSE	canonical	3	21	junction_3	5.6494837522261	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACTATATTTTTAAAAG	NA	False	NA	NA	False	AATAAA	-11	NA	89039806	89149130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_89039888_89045082_89045172_89047015_89047134_89055114_89055212_89056010_89056080_89060259_89060449_89060982_89061223_89064139_89064285_89066489_89066645_89071643_89071864_89078484_89078614_89078875_89078987_89082224_89082384_89083970_89084043_89091668_89091859_89093550_89093643_89100017_89100109_89108550_89108741_89109939_89110031_89113616_89113771_89119754_89119893_89121967_89122186_89126172_89126279_89127374_89127473_89128797_89128876_89131448_89131576_89133568_89133769_89138955_89139224_89146879_89146984_89147873_89147944_89148722
ENSMUSG00000023066.11_29	chr18	+	5150	13	NIC	ENSMUSG00000023066.11	novel	7271	49	NA	NA	-12902	-7	intron_retention	FALSE	canonical	3	25	junction_10	5.71729831301464	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACTATATTTTTAAAAG	NA	False	NA	NA	False	AATAAA	-11	NA	89106849	89149130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_89110031_89113616_89113771_89119754_89119893_89121967_89122186_89126172_89126279_89127374_89127473_89128797_89128876_89131448_89131576_89133568_89133769_89138955_89139224_89146879_89146984_89147873_89147944_89148722
ENSMUSG00000023067.15_0	chr17	+	1927	3	FSM	ENSMUSG00000023067.15	ENSMUST00000119901.9	922	3	13	-1018	13	-3	multi-exon	FALSE	canonical	3	83	junction_1	538	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATAATGTCTTGTCATT	1870	False	NA	21	True	NA	NA	NA	29309965	29319693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29310076_29317370_29317812_29318317
ENSMUSG00000023067.15_2	chr17	+	1905	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	5	3	5	-3	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	1416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATAATGTCTTGTCATT	4652	False	NA	21	True	NA	NA	NA	29312747	29319693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29312836_29317370_29317812_29318317
ENSMUSG00000023067.15_3	chr17	+	2414	2	ISM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	5	0	5	0	intron_retention	FALSE	canonical	3	1306	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4652	False	NA	24	True	NA	NA	NA	29312747	29319696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29312836_29317370
ENSMUSG00000023067.15_9	chr17	+	883	1	ISM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	6068	3	1937	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATAATGTCTTGTCATT	NA	False	NA	21	True	NA	NA	NA	29318810	29319693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29318800_29319700
ENSMUSG00000023068.17_0	chr10	+	2407	5	FSM	ENSMUSG00000023068.17	ENSMUST00000023830.16	4605	5	22	2176	22	-2176	multi-exon	FALSE	canonical	3	398	junction_2	27.0370116691915	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGGTCCAGTCACATT	NA	False	NA	12	True	AATAAA	-13	NA	52293664	52314103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_52294265_52305288_52305415_52306162_52306313_52309440_52309541_52312672
ENSMUSG00000023068.17_1	chr10	+	1854	5	NNC	ENSMUSG00000023068.17	novel	4605	5	NA	NA	10	-2165	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	165.410663199202	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACATTACTTTGCACTT	NA	False	NA	23	True	AATAAA	-24	NA	52293652	52314114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_52293689_52305288_52305415_52306162_52306313_52309440_52309541_52312672
ENSMUSG00000023068.17_18	chr10	+	1948	1	ISM	ENSMUSG00000023068.17	ENSMUST00000023830.16	4605	5	19707	982	8323	-982	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGACTGTAGTAGTATGTG	NA	False	NA	4	True	AATAAA	-17	NA	52313349	52315297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_52313300_52315300
ENSMUSG00000023072.15_0	chr7	+	2503	17	ISM	ENSMUSG00000023072.15	ENSMUST00000141704.8	2825	20	43	8235	23	-2122	5prime_fragment	FALSE	canonical	2	50	junction_16	33.5018073206506	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTGATATTGTCTGTACTC	NA	False	NA	10	True	AATAAA	-16	NA	35096502	35129877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339
ENSMUSG00000023072.15_1	chr7	+	2590	19	FSM	ENSMUSG00000023072.15	ENSMUST00000079414.12	2610	19	15	5	15	-3	multi-exon	FALSE	canonical	2	65	junction_12	24.7032386540712	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACTTTTGCATGTTTAT	NA	False	NA	5	True	AATAAA	-15	NA	35096494	35138109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35131942_35132033_35134898_35135069_35137752
ENSMUSG00000023072.15_2	chr7	+	2583	19	NNC	ENSMUSG00000023072.15	novel	2610	19	NA	NA	23	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	36.9808091706169	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACTTTTGCATGTTTAT	NA	False	NA	5	True	AATAAA	-15	NA	35096502	35138109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122833_35124084_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35131942_35132033_35134898_35135069_35137752
ENSMUSG00000023072.15_41	chr7	+	1071	3	ISM	ENSMUSG00000023072.15	ENSMUST00000079414.12	2610	19	35011	3	3744	-1	3prime_fragment	FALSE	canonical	3	122	junction_2	6	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTTTGCATGTTTATTT	NA	False	NA	7	True	AATAAA	-17	NA	35131490	35138111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_35132033_35134898_35135069_35137752
ENSMUSG00000023072.15_5	chr7	+	2507	17	NNC	ENSMUSG00000023072.15	novel	2825	20	NA	NA	21	-2121	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	44.1628732647685	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGATATTGTCTGTACTCA	NA	False	NA	11	True	AATAAA	-17	NA	35096500	35129878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122833_35124084_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339
ENSMUSG00000023074.12_0	chrX	-	2169	6	FSM	ENSMUSG00000023074.12	ENSMUST00000096447.9	1773	6	11	-407	11	-3	multi-exon	FALSE	canonical	3	89	junction_3	3.77359245282264	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCTCTGTTCTCTCTCCG	NA	False	NA	-7	True	CATAAA	-15	NA	52459368	52433477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_52434867_52436580_52436743_52444532_52444751_52446286_52446363_52446450_52446705_52459298
ENSMUSG00000023074.12_1	chrX	-	1992	5	NIC	ENSMUSG00000023074.12	novel	1773	6	NA	NA	27	-2	intron_retention	FALSE	canonical	1	2	junction_1	40.4436336151934	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTCTGTTCTCTCTCCGT	NA	False	NA	-6	True	CATAAA	-16	NA	52459352	52433476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_52434867_52444532_52444751_52446286_52446363_52446450_52446705_52459298
ENSMUSG00000023074.12_11	chrX	-	2155	6	FSM	ENSMUSG00000023074.12	ENSMUST00000023836.4	1763	6	29	-421	29	-2	multi-exon	FALSE	canonical	0	0	junction_2	37.7804182083788	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTCTGTTCTCTCTCCGT	NA	False	NA	-6	True	CATAAA	-16	NA	52459350	52433476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_52434867_52436580_52436743_52444529_52444751_52446286_52446363_52446450_52446705_52459298
ENSMUSG00000023074.12_3	chrX	-	2292	7	NNC	ENSMUSG00000023074.12	novel	1782	7	NA	NA	11	-3	intron_retention	FALSE	canonical	1	3	junction_2	42.1056871323683	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCTCTGTTCTCTCTCCG	NA	False	NA	-7	True	CATAAA	-15	NA	52459368	52433477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_52434867_52436580_52436743_52440547_52440671_52444532_52444751_52446286_52446363_52446450_52446705_52459298
ENSMUSG00000023074.12_6	chrX	-	2082	5	ISM	ENSMUSG00000023074.12	ENSMUST00000096447.9	1773	6	12693	-408	12693	-2	3prime_fragment	FALSE	canonical	3	89	junction_3	2.9474565306379	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTCTGTTCTCTCTCCGT	NA	False	NA	-6	True	CATAAA	-16	NA	52446686	52433476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_52434867_52436580_52436743_52444532_52444751_52446286_52446363_52446450
ENSMUSG00000023074.12_7	chrX	-	590	1	NIC	ENSMUSG00000023074.12	novel	1782	7	NA	NA	25311	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGCTCTGTTCTCTCTCC	NA	False	NA	-8	True	CATAAA	-14	NA	52434068	52433478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_52433500_52434100
ENSMUSG00000023075.10_0	chr4	-	2168	5	FSM	ENSMUSG00000023075.10	ENSMUST00000102636.4	3052	5	84	800	-30	-800	multi-exon	FALSE	canonical	3	473	junction_3	40.3198152277512	848	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGCCTTCTTGATGCT	NA	False	NA	-14	True	AATAAA	-19	NA	123644054	123629151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_123630658_123631801_123631874_123632935_123633071_123637225_123637367_123643740
ENSMUSG00000023079.15_0	chr5	-	3497	30	FSM	ENSMUSG00000023079.15	ENSMUST00000171794.9	3524	30	4	23	4	0	multi-exon	FALSE	canonical	3	127	junction_8	45.8592169193566	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATGAAAAAGAACA	NA	False	NA	NA	False	TTTAAA	-6	NA	134485566	134386532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
ENSMUSG00000023079.15_12	chr5	-	3438	30	FSM	ENSMUSG00000023079.15	ENSMUST00000111244.5	3461	30	0	23	0	0	multi-exon	FALSE	canonical	3	55	junction_29	53.0244374146404	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATGAAAAAGAACA	NA	False	NA	NA	False	TTTAAA	-6	NA	134485110	134386532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134484965
ENSMUSG00000023079.15_2	chr5	-	3579	31	FSM	ENSMUSG00000023079.15	ENSMUST00000073161.12	3572	31	-25	18	3	0	multi-exon	FALSE	canonical	3	65	junction_9	54.133743840808	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATGAAAAAGAACA	NA	False	NA	NA	False	TTTAAA	-6	NA	134485567	134386532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
ENSMUSG00000023079.15_21	chr5	-	3519	31	NIC	ENSMUSG00000023079.15	novel	3572	31	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_30	59.8322562577151	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATGAAAAAGAACA	NA	False	NA	NA	False	TTTAAA	-6	NA	134485110	134386532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134484965
ENSMUSG00000023079.15_25	chr5	-	3593	30	NIC	ENSMUSG00000023079.15	novel	3524	30	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_12	58.3892999172587	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATGAAAAAGAACA	NA	False	NA	NA	False	TTTAAA	-6	NA	134485563	134386532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411540_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
ENSMUSG00000023079.15_54	chr5	-	4619	29	FSM	ENSMUSG00000023079.15	ENSMUST00000100650.10	3487	29	-157	-975	-27	0	multi-exon	FALSE	canonical	3	127	junction_7	45.9988353889841	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATGAAAAAGAACA	NA	False	NA	NA	False	TTTAAA	-6	NA	134485597	134386532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
ENSMUSG00000023087.16_0	chr3	+	2549	3	FSM	ENSMUSG00000023087.16	ENSMUST00000023849.15	3059	3	484	26	461	-6	multi-exon	FALSE	canonical	3	120	junction_1	3.5	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTGCTTTTAATATCT	9630	False	NA	1	True	AATAAA	-10	NA	51132351	51159039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_51132709_51155225_51155496_51157117
ENSMUSG00000023087.16_2	chr3	+	2066	2	FSM	ENSMUSG00000023087.16	ENSMUST00000144826.2	9797	2	7725	6	4523	-6	multi-exon	FALSE	canonical	3	127	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTGCTTTTAATATCT	NA	False	NA	1	True	AATAAA	-10	NA	51155351	51159039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_51155496_51157117
ENSMUSG00000023087.16_3	chr3	+	1111	1	ISM	ENSMUSG00000023087.16	ENSMUST00000023849.15	3059	3	26061	26	7100	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTGCTTTTAATATCT	NA	False	NA	1	True	AATAAA	-10	NA	51157928	51159039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_51157900_51159000
ENSMUSG00000023088.18_0	chr16	+	5893	31	NIC	ENSMUSG00000023088.18	novel	6792	31	NA	NA	-1	829	combination_of_known_junctions	FALSE	canonical	3	25	junction_20	25.3100770445291	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACGACCATTTTATTTTT	7164	False	NA	16	True	AGTAAA	-22	NA	14179429	14292735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_14179508_14207670_14207848_14209181_14209308_14211816_14211955_14214214_14214341_14221853_14221916_14222877_14223010_14228563_14228798_14229312_14229491_14231084_14231247_14237563_14237657_14240920_14241125_14254370_14254518_14255509_14255598_14257850_14257924_14261211_14261339_14263156_14263334_14265341_14265510_14266263_14266448_14275751_14275834_14276887_14276994_14277620_14277832_14278761_14279073_14282906_14283107_14283967_14284095_14284860_14284963_14285686_14285834_14288333_14288493_14289801_14289969_14290674_14290870_14291323
ENSMUSG00000023088.18_1	chr16	+	5916	31	FSM	ENSMUSG00000023088.18	ENSMUST00000100167.10	6792	31	10	866	3	829	multi-exon	FALSE	canonical	3	92	junction_2	17.5139626837814	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACGACCATTTTATTTTT	7168	False	NA	16	True	AGTAAA	-22	NA	14179433	14292735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_14179508_14207670_14207848_14209181_14209308_14211816_14211955_14214214_14214341_14221853_14221916_14222877_14223010_14228563_14228798_14229312_14229491_14231084_14231247_14237563_14237657_14240920_14241125_14254370_14254518_14255509_14255598_14257850_14257924_14261211_14261339_14263156_14263334_14265341_14265510_14266263_14266448_14275751_14275834_14276860_14276994_14277620_14277832_14278761_14279073_14282906_14283107_14283967_14284095_14284860_14284963_14285686_14285834_14288333_14288493_14289801_14289969_14290674_14290870_14291323
ENSMUSG00000023089.13_0	chr6	-	417	5	FSM	ENSMUSG00000023089.13	ENSMUST00000023851.9	875	5	458	0	15	0	multi-exon	FALSE	canonical	3	2597	junction_4	429.359042643799	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	11	True	NA	-31	True	ATTAAA	-27	NA	24527554	24518664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527524
ENSMUSG00000023089.13_1	chr6	-	389	4	ISM	ENSMUSG00000023089.13	ENSMUST00000141274.2	453	5	207	-1	207	0	3prime_fragment	FALSE	canonical	3	3472	junction_1	80.7148616358158	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	711	False	NA	-31	True	ATTAAA	-27	NA	24527318	24518664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271
ENSMUSG00000023092.17_0	chrX	+	2349	7	FSM	ENSMUSG00000023092.17	ENSMUST00000023854.10	2356	7	-1	8	-1	0	multi-exon	FALSE	canonical	3	131	junction_5	4.78423336480244	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCACGCCTCCTGTCT	NA	False	NA	4	True	AATAAA	-10	NA	55777145	55838698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55837203
ENSMUSG00000023092.17_1	chrX	+	2559	8	NIC	ENSMUSG00000023092.17	novel	2770	8	NA	NA	-13	-2	combination_of_known_junctions	FALSE	canonical	3	11	junction_6	57.513796037941	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGAGCACGCCTCCTGT	NA	False	NA	2	True	AATAAA	-8	NA	55777133	55838696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55836598_55836799_55837203
ENSMUSG00000023092.17_15	chrX	+	1788	3	ISM	ENSMUSG00000023092.17	ENSMUST00000114772.9	2283	6	10218	2	1943	0	3prime_fragment	FALSE	canonical	3	131	junction_1	4.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCACGCCTCCTGTCT	NA	False	NA	4	True	AATAAA	-10	NA	55835300	55838698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_55835407_55835823_55836011_55837203
ENSMUSG00000023092.17_17	chrX	+	1103	1	ISM	ENSMUSG00000023092.17	ENSMUST00000023854.10	2356	7	60449	8	4238	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCACGCCTCCTGTCT	NA	False	NA	4	True	AATAAA	-10	NA	55837595	55838698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_55837600_55838700
ENSMUSG00000023092.17_2	chrX	+	2157	6	NIC	ENSMUSG00000023092.17	novel	2356	7	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	48.3553513067582	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGAGCACGCCTCCTGT	NA	False	NA	2	True	AATAAA	-8	NA	55777148	55838696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55837203
ENSMUSG00000023092.17_5	chrX	+	2929	6	NIC	ENSMUSG00000023092.17	novel	2356	7	NA	NA	-25	-2	intron_retention	FALSE	canonical	3	131	junction_4	5.23832034148352	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGAGCACGCCTCCTGT	NA	False	NA	2	True	AATAAA	-8	NA	55777121	55838696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55835407_55835823_55836011_55837203
ENSMUSG00000023094.15_0	chr2	+	1176	5	FSM	ENSMUSG00000023094.15	ENSMUST00000023856.9	1196	5	15	5	15	-5	multi-exon	FALSE	canonical	3	137	junction_1	15.0996688705415	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACTTTTTTTGTCTCAG	4799	False	NA	14	True	AATAAA	-15	NA	19376461	19399782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_19376591_19382972_19383074_19388051_19388129_19398018_19398167_19399061
ENSMUSG00000023094.15_2	chr2	+	952	2	ISM	ENSMUSG00000023094.15	ENSMUST00000023856.9	1196	5	21489	5	21284	-5	3prime_fragment	FALSE	canonical	3	173	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACTTTTTTTGTCTCAG	8884	False	NA	14	True	AATAAA	-15	NA	19397935	19399782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_19398167_19399061
ENSMUSG00000023104.10_0	chr5	+	1442	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	75	3478	8	-1	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	1046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTTGCTATGCTTAATTG	NA	False	NA	18	True	GATAAA	-14	NA	134611618	134627181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
ENSMUSG00000023104.10_3	chr5	+	3412	10	NIC	ENSMUSG00000023104.10	novel	4995	11	NA	NA	7	-1	intron_retention	FALSE	canonical	3	1115	junction_6	101.321271211923	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTTGCTATGCTTAATTG	NA	False	NA	18	True	GATAAA	-14	NA	134611617	134627181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
ENSMUSG00000023106.16_0	chr5	+	987	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	107	1245	0	457	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGATTTTTTTTTTTCTC	9085	False	NA	9	True	AATAAA	-18	NA	124045344	124065653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023106.16_1	chr5	+	984	7	NIC	ENSMUSG00000023106.16	novel	2339	8	NA	NA	-3	458	combination_of_known_splicesites	FALSE	canonical	3	116	junction_2	529.179684879237	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGATTTTTTTTTTTCTCT	9069	False	NA	10	True	AATAAA	-19	NA	124045328	124065654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_124045430_124046162_124046278_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023110.13_0	chr14	-	2525	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	156	10	-8	-10	multi-exon	FALSE	canonical	3	685	junction_14	59.4941895797396	1203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGCTTTACCCTGCTT	4851	False	NA	-21	True	AATAAA	-15	NA	54754826	54744653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
ENSMUSG00000023118.16_0	chr7	+	4067	27	FSM	ENSMUSG00000023118.16	ENSMUST00000023882.14	4116	27	46	3	0	2	multi-exon	FALSE	canonical	3	103	junction_24	19.2187654844311	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCTGAGGATGTGCCTG	NA	False	NA	12	True	AATAAA	-26	NA	18758347	18788539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603_18764678_18768331_18768459_18769750_18770001_18770586_18770758_18771784_18772025_18774014_18774170_18774466_18774618_18776502_18776708_18777349_18777501_18778859_18779096_18779556_18779639_18779772_18779887_18780679_18780828_18781374_18781536_18782373_18782483_18782764_18782866_18783304_18783396_18783862_18783965_18786291_18786480_18787194_18787372_18787471_18787568_18787839_18788224_18788313
ENSMUSG00000023118.16_7	chr7	+	4713	22	ISM	ENSMUSG00000023118.16	ENSMUST00000023882.14	4116	27	41	2866	-2	-2	5prime_fragment	FALSE	canonical	3	129	junction_5	14.4793229693516	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACATGGCCAGTGGTGT	NA	False	NA	5	True	AATAAA	-18	NA	18758342	18785676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603_18764678_18768331_18768459_18769750_18770001_18770586_18770758_18771784_18772025_18774014_18774170_18774466_18774618_18776502_18776708_18777349_18777501_18778859_18779096_18779556_18779639_18779772_18779887_18780679_18780828_18781374_18781536_18782373_18782483_18782764_18782866_18783304_18783396_18783862
ENSMUSG00000023143.11_0	chr16	-	2124	10	FSM	ENSMUSG00000023143.11	ENSMUST00000023911.11	2143	10	15	4	5	-4	multi-exon	FALSE	canonical	3	106	junction_1	7.98764478027175	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAAGCCACCAGGGGGC	NA	False	NA	NA	False	AATAAA	-11	NA	5021861	5013156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_5013923_5015418_5015483_5015575_5015678_5016439_5016488_5016594_5016801_5017479_5017609_5017806_5017916_5019237_5019378_5021204_5021664_5021760
ENSMUSG00000023143.11_4	chr16	-	1819	9	FSM	ENSMUSG00000023143.11	ENSMUST00000147567.2	2230	9	407	4	-118	-4	multi-exon	FALSE	canonical	3	106	junction_1	8.42244026396151	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAAGCCACCAGGGGGC	NA	False	NA	NA	False	AATAAA	-11	NA	5021459	5013156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_5013923_5015418_5015483_5015575_5015678_5016439_5016488_5016594_5016801_5017479_5017609_5017806_5017916_5019237_5019378_5021204
ENSMUSG00000023147.18_0	chr16	+	2469	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	12	14	1	-8	multi-exon	FALSE	canonical	3	306	junction_2	29.2350389088163	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGGACTGGGTACTGT	NA	False	NA	16	True	AATAAA	-10	NA	95946618	95959038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
ENSMUSG00000023147.18_16	chr16	+	1648	1	ISM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	10784	14	4381	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGGACTGGGTACTGT	NA	False	NA	16	True	AATAAA	-10	NA	95957390	95959038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_95957400_95959000
ENSMUSG00000023147.18_2	chr16	+	2402	4	FSM	ENSMUSG00000023147.18	ENSMUST00000233566.2	2415	4	5	8	0	-8	multi-exon	FALSE	canonical	3	18	junction_2	163.242832069963	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGGACTGGGTACTGT	NA	False	NA	16	True	AATAAA	-10	NA	95946617	95959038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_95946779_95953012_95953179_95955280_95955396_95957078
ENSMUSG00000023150.15_12	chr1	+	2775	8	FSM	ENSMUSG00000023150.15	ENSMUST00000111887.10	2783	8	3	5	3	-5	multi-exon	TRUE	canonical	3	234	junction_7	396.626282743927	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGAGTTACGTCTGTAGCC	NA	False	NA	6	True	ATTAAA	-23	NA	151220262	151232545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917
ENSMUSG00000023150.15_2	chr1	+	3307	15	FSM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	40	164	-1	-157	multi-exon	FALSE	canonical	3	1145	junction_2	98.7764172879585	2259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCTTTTCAGAAGTGTTT	NA	False	NA	12	True	ATTAAA	-22	NA	151220267	151240009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ENSMUSG00000023150.15_5	chr1	+	4272	15	FSM	ENSMUSG00000023150.15	ENSMUST00000186745.2	3315	15	-64	-893	-4	-157	multi-exon	TRUE	canonical	3	234	junction_7	304.179802157895	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCTTTTCAGAAGTGTTT	NA	False	NA	12	True	ATTAAA	-22	NA	151220264	151240009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ENSMUSG00000023153.10_2	chr4	+	939	5	FSM	ENSMUSG00000023153.10	ENSMUST00000023920.3	932	5	-19	12	-2	-12	multi-exon	FALSE	canonical	1	2	junction_1	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTAAACATGTTCTCGGTC	142	False	NA	NA	False	AATAAA	-5	NA	155553568	155555302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155553668_155553759_155553804_155553918_155553961_155554445_155554625_155554727
ENSMUSG00000023156.5_0	chr14	-	1958	6	FSM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	-2	445	-2	-445	multi-exon	FALSE	canonical	3	219	junction_4	6.88767014308903	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAACAAAAAATGACA	NA	False	NA	-39	True	NA	NA	NA	14389408	14378383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
ENSMUSG00000023169.16_0	chr15	-	2508	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088454.13	6966	16	-114	4572	35	-3	multi-exon	FALSE	canonical	3	214	junction_15	70.2442089348929	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACAATGGTTTGTTTCC	NA	False	NA	-6	True	ATTAAA	-21	NA	96540245	96473870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
ENSMUSG00000023169.16_1	chr15	-	3481	1	ISM	ENSMUSG00000023169.16	ENSMUST00000088454.13	6966	16	67346	6	4680	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTACTTCCGAGTCTCGT	1960	False	NA	-23	True	ATTAAA	-10	NA	96472785	96469304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_96469300_96472800
ENSMUSG00000023169.16_3	chr15	-	2745	16	FSM	ENSMUSG00000023169.16	ENSMUST00000100262.4	3183	16	438	0	438	0	multi-exon	FALSE	canonical	3	92	junction_15	98.2259074220691	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGGTTTGTTTCCCTC	NA	False	NA	-3	True	ATTAAA	-24	NA	96539405	96473867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96538934
ENSMUSG00000023169.16_4	chr15	-	4081	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088452.11	7266	16	50	3135	50	1434	multi-exon	FALSE	canonical	3	128	junction_15	89.8033901859439	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATATGTGGGTTTCTTTTT	NA	False	NA	-98	True	NA	NA	NA	96540744	96472433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540371
ENSMUSG00000023169.16_51	chr15	-	3423	1	FSM	ENSMUSG00000023169.16	ENSMUST00000229253.2	3722	1	294	5	107	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAGCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96539986	96536563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_96536600_96540000
ENSMUSG00000023170.15_1	chr11	+	1161	11	FSM	ENSMUSG00000023170.15	ENSMUST00000116358.8	1159	11	-5	3	-5	-3	multi-exon	FALSE	canonical	3	122	junction_1	67.5763272159711	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCATGCCTGAGTGCTG	4086	False	NA	8	True	AATAAA	-18	NA	69804870	69807413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69804897_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ENSMUSG00000023170.15_3	chr11	+	1356	10	FSM	ENSMUSG00000023170.15	ENSMUST00000057884.6	1220	10	-138	2	4	-1	multi-exon	FALSE	canonical	3	266	junction_9	31.9443961352292	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATGCCTGAGTGCTGTT	4095	False	NA	10	True	AATAAA	-20	NA	69804879	69807415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ENSMUSG00000023175.16_0	chr10	+	1241	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	16	4	-1	-4	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	4630	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGTGTGTGTCACTACT	NA	False	NA	17	True	AATAAA	-11	NA	79540340	79547799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
ENSMUSG00000023186.15_1	chr9	+	3708	20	FSM	ENSMUSG00000023186.15	ENSMUST00000001544.12	4157	20	34	415	30	160	multi-exon	TRUE	canonical	2	10	junction_6	2.97449918967259	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCACATGGGTTCTTGGG	NA	False	NA	NA	False	NA	NA	NA	38629597	38654218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_38629684_38630553_38630630_38633668_38633727_38633841_38634045_38634322_38634546_38634662_38634839_38635141_38635257_38638238_38638409_38639049_38639139_38639289_38639435_38639917_38639998_38645160_38645276_38645992_38646158_38646854_38646956_38647247_38647502_38649038_38649105_38649198_38649298_38649781_38649913_38652393_38652521_38652989
ENSMUSG00000023186.15_2	chr9	+	3304	19	FSM	ENSMUSG00000023186.15	ENSMUST00000118144.8	3502	19	48	150	48	-150	multi-exon	FALSE	canonical	0	0	junction_1	4.43645114538998	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCTGGACTGCTCCTGA	NA	False	NA	NA	False	NA	NA	NA	38629615	38653908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_38629684_38633668_38633727_38633841_38634045_38634322_38634546_38634662_38634839_38635141_38635257_38638238_38638409_38639049_38639139_38639289_38639435_38639917_38639998_38645160_38645276_38645992_38646158_38646854_38646956_38647247_38647502_38649038_38649105_38649198_38649298_38649781_38649913_38652393_38652521_38652989
ENSMUSG00000023186.15_4	chr9	+	1695	6	ISM	ENSMUSG00000023186.15	ENSMUST00000118144.8	3502	19	17733	-2	18	2	3prime_fragment	FALSE	canonical	2	11	junction_2	2.57681974534503	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGGAGATTTTTGTATG	9992	False	NA	NA	False	NA	NA	NA	38647300	38654060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_38647502_38649038_38649105_38649198_38649298_38649781_38649913_38652393_38652521_38652989
ENSMUSG00000023191.10_2	chr6	-	2807	15	FSM	ENSMUSG00000023191.10	ENSMUST00000023958.10	2850	15	37	6	14	-6	multi-exon	FALSE	canonical	1	4	junction_14	4.42396073348629	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAAGGCCTGGTCTGCTC	5520	False	NA	NA	False	AATAAA	-21	NA	124834678	124818057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124818803_124819034_124819176_124821978_124822055_124822164_124822283_124822470_124822622_124822904_124823007_124827588_124827714_124827880_124827949_124828041_124828095_124830013_124830104_124831273_124831411_124831810_124831943_124832043_124832240_124832906_124833060_124834158
ENSMUSG00000023191.10_3	chr6	-	175	1	ISM	ENSMUSG00000023191.10	ENSMUST00000023958.10	2850	15	16391	98	1250	19	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAAGA	10004	False	NA	NA	False	NA	NA	NA	124818324	124818149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124818100_124818300
ENSMUSG00000023191.10_8	chr6	-	1379	7	ISM	ENSMUSG00000023191.10	ENSMUST00000023958.10	2850	15	7081	6	322	-6	3prime_fragment	FALSE	canonical	3	8	junction_4	3.85861230093008	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAAGGCCTGGTCTGCTC	1838	False	NA	NA	False	AATAAA	-21	NA	124827634	124818057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124818803_124819034_124819176_124821978_124822055_124822164_124822283_124822470_124822622_124822904_124823007_124827588
ENSMUSG00000023192.13_0	chr9	-	1074	3	ISM	ENSMUSG00000023192.13	ENSMUST00000201681.2	2111	7	8594	-348	615	348	3prime_fragment	FALSE	canonical	2	2	junction_2	2	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACGTTTTGTTAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	106524687	106521735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_106522291_106522495_106522677_106524349
ENSMUSG00000023192.13_2	chr9	-	708	2	ISM	ENSMUSG00000023192.13	ENSMUST00000201955.2	448	3	1164	-447	1164	348	3prime_fragment	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACGTTTTGTTAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	106522648	106521735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_106522291_106522495
ENSMUSG00000023224.13_0	chr2	-	1809	8	FSM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	-18	-23	-18	23	multi-exon	FALSE	canonical	3	11	junction_7	34.9080424626107	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCCTCTGTGTACTAGT	NA	False	NA	-3	True	AATAAA	-24	NA	84605766	84595707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083_84605159_84605706
ENSMUSG00000023224.13_2	chr2	-	1777	7	ISM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	562	-23	286	23	3prime_fragment	FALSE	canonical	3	78	junction_3	14.4270194041905	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCCTCTGTGTACTAGT	NA	False	NA	-3	True	AATAAA	-24	NA	84605186	84595707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083
ENSMUSG00000023232.18_1	chr4	-	1858	10	FSM	ENSMUSG00000023232.18	ENSMUST00000105996.8	1878	10	18	2	18	-2	multi-exon	FALSE	canonical	2	4	junction_9	3.01027048536535	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCCTCCCATGTCTTG	7814	False	NA	-3	True	AATAAA	-15	NA	130169361	130147289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_130147859_130149148_130149359_130152020_130152157_130152493_130152585_130154435_130154606_130156820_130156959_130157374_130157455_130158053_130158245_130158861_130159024_130169250
ENSMUSG00000023235.15_0	chr8	+	1911	3	FSM	ENSMUSG00000023235.15	ENSMUST00000153254.3	362	3	-41	-1508	-10	0	multi-exon	FALSE	canonical	3	5	junction_2	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGTCTTGGATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	4375199	4384807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4375289_4377756_4377894_4383122
ENSMUSG00000023235.15_12	chr8	+	5105	1	FSM	ENSMUSG00000023235.15	ENSMUST00000207839.2	2461	1	19	-2663	11	2663	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAACCAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	4375251	4380356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4375300_4380400
ENSMUSG00000023235.15_3	chr8	+	7113	2	ISM	ENSMUSG00000023235.15	ENSMUST00000153254.3	362	3	-14	-1508	0	0	intron_retention	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGTCTTGGATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	4375226	4384807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_4375289_4377756
ENSMUSG00000023235.15_6	chr8	+	998	6	FSM	ENSMUSG00000023235.15	ENSMUST00000024004.9	1058	6	16	44	16	-22	multi-exon	FALSE	canonical	2	8	junction_1	5.67097875150313	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAACTTAAAAA	7929	False	NA	NA	False	NA	NA	NA	4399603	4409976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4399656_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
ENSMUSG00000023235.15_8	chr8	+	1119	7	NIC	ENSMUSG00000023235.15	novel	867	8	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	6.71854812358213	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAAGTAATGACTGAC	NA	False	NA	NA	False	AATAAA	-14	NA	4375232	4409999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_4375289_4377756_4377851_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
ENSMUSG00000023243.10_0	chr14	-	3361	5	FSM	ENSMUSG00000023243.10	ENSMUST00000024011.10	3392	5	28	3	28	-3	multi-exon	FALSE	canonical	3	94	junction_3	12.5573683548744	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTGGTGTGTGGTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	20231849	20190127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20192526_20194702_20194872_20195023_20195191_20196568_20196681_20231334
ENSMUSG00000023243.10_1	chr14	-	1811	1	ISM	ENSMUSG00000023243.10	ENSMUST00000024011.10	3392	5	39939	3	3424	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTGGTGTGTGGTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	20191938	20190127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20190100_20191900
ENSMUSG00000023249.16_10	chr9	-	2220	11	FSM	ENSMUSG00000023249.16	ENSMUST00000123555.8	2495	11	262	13	-10	-13	multi-exon	FALSE	canonical	0	0	junction_10	2.9	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTAAAACTCATTTCTCC	NA	False	NA	NA	False	NA	NA	NA	106353313	106347838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106348602_106348958_106349115_106350227_106350406_106350631_106350719_106350879_106351033_106351256_106351484_106351595_106351720_106351878_106352068_106352221_106352348_106352997_106353182_106353280
ENSMUSG00000023259.18_0	chr9	+	2639	21	FSM	ENSMUSG00000023259.18	ENSMUST00000188557.8	2552	21	-73	-14	-12	0	multi-exon	FALSE	canonical	3	10	junction_1	9.81121806912883	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCAGGCTCTGCTGTGG	NA	False	NA	12	True	AATAAA	-12	NA	108731260	108742110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108731386_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
ENSMUSG00000023259.18_11	chr9	+	2956	18	FSM	ENSMUSG00000023259.18	ENSMUST00000193291.7	3046	18	24	66	-7	-13	multi-exon	FALSE	canonical	3	10	junction_1	8.63965269069984	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAGGCCAGCCCTCTTTG	NA	False	NA	NA	False	ACTAAA	-21	NA	108731265	108739597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108732034_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280
ENSMUSG00000023259.18_2	chr9	+	3253	21	FSM	ENSMUSG00000023259.18	ENSMUST00000239562.1	2659	21	-601	7	2	0	multi-exon	FALSE	canonical	3	10	junction_1	9.81121806912883	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCAGGCTCTGCTGTGG	NA	False	NA	12	True	AATAAA	-12	NA	108731294	108742110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108732034_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
ENSMUSG00000023259.18_6	chr9	+	3287	21	NNC	ENSMUSG00000023259.18	novel	2659	21	NA	NA	1	0	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_1	10.09405765785	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCAGGCTCTGCTGTGG	NA	False	NA	12	True	AATAAA	-12	NA	108731242	108742110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_108732016_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
ENSMUSG00000023262.14_0	chr9	-	1422	15	FSM	ENSMUSG00000023262.14	ENSMUST00000024031.13	1529	15	97	10	-20	0	multi-exon	FALSE	canonical	3	198	junction_14	78.143510052117	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTTAATACTGTGGAC	NA	False	NA	-17	True	AATAAA	-17	NA	106315421	106310189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
ENSMUSG00000023262.14_2	chr9	-	1418	15	NIC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	284	junction_14	59.3909565025326	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTTAATACTGTGGAC	NA	False	NA	-17	True	AATAAA	-17	NA	106315421	106310189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314933_106315331
ENSMUSG00000023266.12_16	chr17	+	1624	3	ISM	ENSMUSG00000023266.12	ENSMUST00000113296.8	2144	7	6450	1	-417	1	3prime_fragment	FALSE	canonical	3	46	junction_1	18	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGTGAGTGCTCTCGTC	NA	False	NA	NA	False	AATATA	-18	NA	48012572	48015210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_48012710_48013494_48013650_48013878
ENSMUSG00000023266.12_18	chr17	+	1047	1	ISM	ENSMUSG00000023266.12	ENSMUST00000113296.8	2144	7	8041	1	1174	1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGTGAGTGCTCTCGTC	NA	False	NA	NA	False	AATATA	-18	NA	48014163	48015210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_48014200_48015200
ENSMUSG00000023266.12_3	chr17	+	2158	7	FSM	ENSMUSG00000023266.12	ENSMUST00000113296.8	2144	7	-16	2	-16	0	multi-exon	FALSE	canonical	3	46	junction_5	11.8988794990677	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCAGTGAGTGCTCTCGT	NA	False	NA	NA	False	AATATA	-17	NA	48006106	48015209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_48006198_48008115_48008259_48009497_48009587_48010433_48010621_48012547_48012710_48013494_48013650_48013878
ENSMUSG00000023266.12_4	chr17	+	4231	6	NIC	ENSMUSG00000023266.12	novel	2144	7	NA	NA	-163	-1	intron_retention	FALSE	canonical	3	46	junction_4	12.5059985606908	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTCAGTGAGTGCTCTCG	NA	False	NA	NA	False	AATATA	-16	NA	48005959	48015208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_48006198_48008115_48008259_48009497_48009587_48010433_48012710_48013494_48013650_48013878
ENSMUSG00000023266.12_9	chr17	+	4057	6	NIC	ENSMUSG00000023266.12	novel	2144	7	NA	NA	4	1	intron_retention	FALSE	canonical	3	46	junction_4	13.0322676461159	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGTGAGTGCTCTCGTC	NA	False	NA	NA	False	AATATA	-18	NA	48006126	48015210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_48008259_48009497_48009587_48010433_48010621_48012547_48012710_48013494_48013650_48013878
ENSMUSG00000023272.5_0	chr15	+	1361	10	FSM	ENSMUSG00000023272.5	ENSMUST00000024042.5	1366	10	0	5	0	-5	multi-exon	FALSE	canonical	3	902	junction_1	99.7619388566824	756	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACAGGACGTGTTGGTT	NA	False	NA	12	True	AATAAA	-21	NA	88703848	88710881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_88704038_88704133_88704217_88704731_88704843_88705337_88705430_88706161_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710589
ENSMUSG00000023277.14_0	chr9	+	1570	9	FSM	ENSMUSG00000023277.14	ENSMUST00000024047.12	1596	9	19	7	-10	-3	multi-exon	FALSE	canonical	3	299	junction_8	33.0111250186963	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAATACTGAGCCTGGG	NA	False	NA	12	True	AATAAA	-9	NA	106080325	106092581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_106080484_106084087_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ENSMUSG00000023277.14_15	chr9	+	1447	7	ISM	ENSMUSG00000023277.14	ENSMUST00000188650.2	1508	8	4808	5	-113	-3	3prime_fragment	FALSE	canonical	3	299	junction_6	32.8705372974374	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAATACTGAGCCTGGG	NA	False	NA	12	True	AATAAA	-9	NA	106088804	106092581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ENSMUSG00000023277.14_17	chr9	+	1227	6	FSM	ENSMUSG00000023277.14	ENSMUST00000217523.2	819	6	0	-408	0	0	multi-exon	FALSE	canonical	3	299	junction_5	34.8906864363543	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTGAGCCTGGGTGCCT	NA	False	NA	17	True	AATAAA	-14	NA	106089387	106092586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ENSMUSG00000023284.16_0	chr5	+	4674	5	NNC	ENSMUSG00000023284.16	novel	3158	5	NA	NA	-57	1715	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	22.410934831015	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATACAAATTTGGTGA	2136	False	NA	-8	True	AATAAA	-6	NA	110258144	110279375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_110258172_110259762_110259933_110271625_110271747_110272218_110272312_110275112
ENSMUSG00000023284.16_1	chr5	+	2933	5	FSM	ENSMUSG00000023284.16	ENSMUST00000112528.8	3158	5	195	30	-49	-30	multi-exon	FALSE	canonical	3	28	junction_1	12.7744862910412	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTTGTCTAT	2144	False	NA	NA	False	NA	NA	NA	110258152	110277630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110258184_110259762_110259933_110271625_110271747_110272218_110272312_110275112
ENSMUSG00000023284.16_3	chr5	+	3113	5	FSM	ENSMUSG00000023284.16	ENSMUST00000147631.8	748	5	-19	-2346	-4	-30	multi-exon	FALSE	canonical	3	14	junction_1	18.0052075800308	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTTGTCTAT	2189	False	NA	NA	False	NA	NA	NA	110258197	110277630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110258409_110259762_110259933_110271625_110271747_110272218_110272312_110275112
ENSMUSG00000023284.16_5	chr5	+	2883	4	FSM	ENSMUSG00000023284.16	ENSMUST00000086686.7	2085	4	-136	-662	-136	-30	multi-exon	FALSE	canonical	3	44	junction_2	8.80656320908194	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTTGTCTAT	3773	False	NA	NA	False	NA	NA	NA	110259781	110277630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110259933_110271625_110271747_110272218_110272312_110275112
ENSMUSG00000023284.16_6	chr5	+	1835	1	ISM	ENSMUSG00000023284.16	ENSMUST00000112528.8	3158	5	17849	19	15889	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTCTATTTTAACCAGCA	NA	False	NA	NA	False	NA	NA	NA	110275806	110277641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110275800_110277600
ENSMUSG00000023286.17_0	chr4	+	1294	7	FSM	ENSMUSG00000023286.17	ENSMUST00000103175.8	1309	7	12	3	-7	-3	multi-exon	FALSE	canonical	3	344	junction_1	275.8918870379	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAATACTCTGTGTGTGT	769	False	NA	31	True	TATAAA	-13	NA	156028299	156042165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_156028471_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUSG00000023286.17_1	chr4	+	1580	8	FSM	ENSMUSG00000023286.17	ENSMUST00000024056.10	3483	8	7	1896	-4	-3	multi-exon	FALSE	canonical	3	207	junction_1	340.827324764495	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAATACTCTGTGTGTGT	783	False	NA	31	True	TATAAA	-13	NA	156028313	156042165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_156028608_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUSG00000023286.17_2	chr4	+	1450	8	FSM	ENSMUSG00000023286.17	ENSMUST00000105583.9	1434	8	-19	3	0	-3	multi-exon	FALSE	canonical	3	230	junction_1	334.708584793838	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAATACTCTGTGTGTGT	776	False	NA	31	True	TATAAA	-13	NA	156028306	156042165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_156028471_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUSG00000023286.17_3	chr4	+	1419	7	FSM	ENSMUSG00000023286.17	ENSMUST00000166489.8	3339	7	24	1896	5	-3	multi-exon	FALSE	canonical	3	339	junction_1	277.674519696873	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAATACTCTGTGTGTGT	781	False	NA	31	True	TATAAA	-13	NA	156028311	156042165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_156028608_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUSG00000023307.15_2	chr19	+	1649	6	FSM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	-3	163	-3	11	multi-exon	FALSE	canonical	3	653	junction_3	49.1747902893342	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATGTATGTCAGCATTG	NA	False	NA	4	True	AATAAA	-11	NA	37184938	37199387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
ENSMUSG00000023307.15_5	chr19	+	1320	5	FSM	ENSMUSG00000023307.15	ENSMUST00000112391.8	1293	5	-28	1	-3	-1	multi-exon	FALSE	canonical	3	653	junction_3	54.8475158963467	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATACTGTTTCCTGTCAT	NA	False	NA	11	True	AATAAA	-19	NA	37184938	37198474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037
ENSMUSG00000023330.13_0	chr2	+	1304	5	FSM	ENSMUSG00000023330.13	ENSMUST00000170908.8	1342	5	34	4	34	-4	multi-exon	FALSE	canonical	3	175	junction_1	15.4495145554804	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATACTCGCCCTTACCT	7313	False	NA	21	True	ATTAAA	-19	NA	125994094	126007192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_125994135_125996465_125996781_126000329_126000474_126001689_126001949_126006646
ENSMUSG00000023330.13_1	chr2	+	1170	4	NIC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	24	-4	combination_of_known_splicesites	FALSE	canonical	3	21	junction_2	74.5534856477028	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATACTCGCCCTTACCT	7303	False	NA	21	True	ATTAAA	-19	NA	125994084	126007192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_125994135_125996465_125996781_126001689_126001949_126006646
ENSMUSG00000023330.13_2	chr2	+	5368	4	ISM	ENSMUSG00000023330.13	ENSMUST00000170908.8	1342	5	30	642	30	-642	5prime_fragment	FALSE	canonical	3	175	junction_1	16.739839372653	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACATATTATTGTACCAG	7309	False	NA	NA	False	ATTAAA	-16	NA	125994090	126006554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_125994135_125996465_125996781_126000329_126000474_126001689
ENSMUSG00000023330.13_3	chr2	+	1613	5	NNC	ENSMUSG00000023330.13	novel	1276	4	NA	NA	88	-4	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	62.1867148191637	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATACTCGCCCTTACCT	7367	False	NA	21	True	ATTAAA	-19	NA	125994148	126007192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_125994498_125996465_125996781_126000329_126000474_126001689_126001949_126006646
ENSMUSG00000023330.13_4	chr2	+	1269	4	FSM	ENSMUSG00000023330.13	ENSMUST00000110437.4	1276	4	0	7	0	-4	multi-exon	FALSE	canonical	3	183	junction_3	13.6381816969859	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATACTCGCCCTTACCT	9679	False	NA	21	True	ATTAAA	-19	NA	125996460	126007192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_125996781_126000329_126000474_126001689_126001949_126006646
ENSMUSG00000023341.16_1	chr16	+	2372	14	FSM	ENSMUSG00000023341.16	ENSMUST00000188251.7	2421	14	1	48	1	-47	multi-exon	FALSE	canonical	0	0	junction_2	1.87477809337753	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGGGAGCTGCCTGTT	NA	False	NA	NA	False	AATAAA	-11	NA	97337281	97362052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_97337374_97339817_97339930_97345667_97345861_97346811_97346950_97347524_97347680_97347946_97348086_97348537_97348737_97352096_97352176_97352595_97352719_97353123_97353267_97357160_97357320_97357801_97357879_97359719_97359969_97361538
ENSMUSG00000023345.18_0	chr9	+	1396	11	FSM	ENSMUSG00000023345.18	ENSMUST00000072206.14	2337	11	296	645	-23	0	multi-exon	FALSE	canonical	3	282	junction_9	19.0265603827912	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGCCACATCTTACCCA	9853	False	NA	6	True	AATAAA	-18	NA	106158555	106227075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207071_106207216_106226880
ENSMUSG00000023345.18_2	chr9	+	1369	11	NIC	ENSMUSG00000023345.18	novel	2337	11	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	88.6248272212702	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGCCACATCTTACCCA	9852	False	NA	6	True	AATAAA	-18	NA	106158554	106227075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207099_106207216_106226880
ENSMUSG00000023348.12_0	chr5	-	1739	9	FSM	ENSMUSG00000023348.12	ENSMUST00000024119.11	2168	9	178	251	-19	-251	multi-exon	FALSE	canonical	3	95	junction_6	14.9248115565993	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCACTTCCAAGTCTGT	1705	False	NA	-8	True	NA	NA	NA	137312488	137308166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137308437_137308546_137308668_137308914_137309094_137310135_137310306_137310401_137310496_137310967_137311352_137311612_137311739_137311842_137311971_137312221
ENSMUSG00000023348.12_3	chr5	-	836	5	ISM	ENSMUSG00000023348.12	ENSMUST00000024119.11	2168	9	2169	251	1929	-251	3prime_fragment	FALSE	canonical	3	121	junction_2	6.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCACTTCCAAGTCTGT	3696	False	NA	-8	True	NA	NA	NA	137310497	137308166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137308437_137308546_137308668_137308914_137309094_137310135_137310306_137310401
ENSMUSG00000023348.12_9	chr5	-	3423	8	ISM	ENSMUSG00000037344.15_ENSMUSG00000023348.12	ENSMUST00000024119.11	2168	9	-1255	251	-1255	-251	intron_retention	FALSE	canonical	3	95	junction_6	15.9540155523585	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCACTTCCAAGTCTGT	272	False	NA	-8	True	NA	NA	NA	137313921	137308166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137308437_137308546_137308668_137308914_137309094_137310135_137310306_137310401_137310496_137310967_137311352_137311612_137311739_137311842
ENSMUSG00000023353.15_2	chr5	+	3121	16	NIC	ENSMUSG00000023353.15	novel	3207	18	NA	NA	-231	2	combination_of_known_junctions	FALSE	canonical	3	94	junction_11	24.1655402036316	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTCTCCTTTGGTGCC	NA	False	NA	13	True	AATAAA	-19	NA	24656943	24707037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_24657533_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24688338_24688432_24692786_24692892_24697955_24698125_24704655_24704811_24704912_24705004_24705120_24705344_24706007_24706264_24706394
ENSMUSG00000023353.15_3	chr5	+	3428	18	FSM	ENSMUSG00000023353.15	ENSMUST00000024123.9	3207	18	-230	9	-230	1	multi-exon	FALSE	canonical	3	41	junction_12	48.4543090880899	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTTTCTCCTTTGGTGC	NA	False	NA	12	True	AATAAA	-18	NA	24656944	24707036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24657533_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24688338_24688432_24692786_24692892_24697955_24698125_24701730_24701902_24703067_24703206_24704655_24704811_24704912_24705004_24705120_24705344_24706007_24706264_24706394
ENSMUSG00000023353.15_6	chr5	+	2299	9	FSM	ENSMUSG00000023353.15	ENSMUST00000199647.2	1061	9	-388	-850	-231	-4	multi-exon	FALSE	canonical	3	38	junction_8	47.1665930505904	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATACTCGTGTCTTGGTTCC	NA	False	NA	9	True	AATAAA	-9	NA	24656943	24688176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24657533_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24687263
ENSMUSG00000023367.15_0	chr6	+	1057	7	FSM	ENSMUSG00000023367.15	ENSMUST00000101426.11	1540	7	-39	522	-39	-14	multi-exon	FALSE	canonical	1	1	junction_2	2.11476292340825	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTTATTGCTGGCAGG	NA	False	NA	NA	False	AATAAA	-3	NA	48818406	48822281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48818524_48819137_48819336_48819522_48819634_48820718_48820776_48820894_48821114_48821601_48821713_48822037
ENSMUSG00000023387.9_0	chr14	-	2333	5	FSM	ENSMUSG00000023387.9	ENSMUST00000024155.9	916	5	-42	-1375	-42	-5	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCAGTGGATTGCAGGAG	NA	False	NA	NA	False	AATAAA	-19	NA	20319309	20311448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20313042_20313316_20313483_20314227_20314395_20315233_20315349_20319017
ENSMUSG00000023391.9_0	chr2	-	2181	3	FSM	ENSMUSG00000023391.9	ENSMUST00000024159.8	2473	3	290	2	290	-2	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGTGTGCTTTTTCCTTG	NA	False	NA	NA	False	AATAAA	-16	NA	71376808	71373753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_71375269_71375727_71375913_71376327
ENSMUSG00000023393.16_0	chr2	+	2116	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	56	-3	combination_of_known_splicesites	TRUE	canonical	3	57	junction_3	52.1550453966879	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGTTGTTTTATTCA	NA	False	NA	26	True	ATTAAA	-11	NA	180367111	180384070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_180367245_180373672_180373871_180374225_180374366_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
ENSMUSG00000023393.16_1	chr2	+	2213	13	FSM	ENSMUSG00000023393.16	ENSMUST00000094218.4	2275	13	55	7	55	-7	multi-exon	TRUE	canonical	3	124	junction_2	30.6879455161143	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAGATTGTTGTTTTA	NA	False	NA	22	True	ATTAAA	-7	NA	180367110	180384066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
ENSMUSG00000023393.16_12	chr2	+	2037	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-55	-7	combination_of_known_splicesites	FALSE	canonical	3	39	junction_2	65.9963685452239	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAGATTGTTGTTTTA	NA	False	NA	22	True	ATTAAA	-7	NA	180367116	180384066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_180367245_180373672_180373801_180374225_180374366_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
ENSMUSG00000023393.16_14	chr2	+	2557	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-45	-2	intron_retention	FALSE	canonical	3	182	junction_6	18.7713514794124	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGTTGTTTTATTCAA	NA	False	NA	27	True	ATTAAA	-12	NA	180367126	180384071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_180367245_180373672_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
ENSMUSG00000023393.16_26	chr2	+	2075	11	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-46	-7	combination_of_known_splicesites	FALSE	canonical	3	19	junction_7	65.8692644561938	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAGATTGTTGTTTTA	NA	False	NA	22	True	ATTAAA	-7	NA	180367125	180384066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180381611_180381728_180382318_180382375_180382505_180382536_180383075
ENSMUSG00000023393.16_40	chr2	+	1627	9	ISM	ENSMUSG00000023393.16	ENSMUST00000094218.4	2275	13	10594	7	-561	-7	3prime_fragment	FALSE	canonical	3	182	junction_3	17.4212513901843	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAGATTGTTGTTTTA	NA	False	NA	22	True	ATTAAA	-7	NA	180377649	180384066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
ENSMUSG00000023393.16_51	chr2	+	687	1	ISM	ENSMUSG00000023393.16	ENSMUST00000094218.4	2275	13	16329	2	3318	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGTTGTTTTATTCAA	NA	False	NA	27	True	ATTAAA	-12	NA	180383384	180384071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_180383400_180384100
ENSMUSG00000023393.16_6	chr2	+	2115	13	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-33	-7	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	51.5985437994351	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAGATTGTTGTTTTA	NA	False	NA	22	True	ATTAAA	-7	NA	180367138	180384066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_180367245_180373672_180373801_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
ENSMUSG00000023403.15_1	chr6	+	3175	24	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-51	-5	at_least_one_novel_splicesite	FALSE	canonical	2	90	junction_1	54.4319696453353	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACCTGAAAATCATTCATA	122	False	NA	NA	False	AATAAA	-16	NA	49372486	49446429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUSG00000023403.15_19	chr6	+	2460	20	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-39	-5	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	54.5748107857386	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACCTGAAAATCATTCATA	134	False	NA	NA	False	AATAAA	-16	NA	49372498	49446429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUSG00000023403.15_2	chr6	+	2641	22	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-51	-5	at_least_one_novel_splicesite	FALSE	canonical	2	62	junction_6	55.816430581886	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACCTGAAAATCATTCATA	122	False	NA	NA	False	AATAAA	-16	NA	49372486	49446429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUSG00000023403.15_20	chr6	+	3260	24	FSM	ENSMUSG00000023403.15	ENSMUST00000024171.14	3237	24	-29	6	-29	-5	multi-exon	FALSE	canonical	2	108	junction_8	52.5929548855327	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACCTGAAAATCATTCATA	144	False	NA	NA	False	AATAAA	-16	NA	49372508	49446429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUSG00000023403.15_21	chr6	+	2719	22	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-20	-3	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	53.746739604748	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTGAAAATCATTCATATT	153	False	NA	NA	False	AATAAA	-18	NA	49372517	49446431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUSG00000023403.15_3	chr6	+	2369	20	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-55	-5	at_least_one_novel_splicesite	TRUE	canonical	2	62	junction_6	56.8725064900417	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACCTGAAAATCATTCATA	118	False	NA	NA	False	AATAAA	-16	NA	49372482	49446429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUSG00000023403.15_35	chr6	+	3152	23	ISM	ENSMUSG00000023403.15	ENSMUST00000024171.14	3237	24	2456	5	2425	-4	3prime_fragment	FALSE	canonical	2	108	junction_7	49.3739316235495	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCTGAAAATCATTCATAT	2629	False	NA	NA	False	AATAAA	-17	NA	49374993	49446430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUSG00000023411.13_2	chr14	+	3224	10	FSM	ENSMUSG00000023411.13	ENSMUST00000024179.6	3267	10	43	0	43	0	multi-exon	FALSE	canonical	3	26	junction_9	7.13537527022325	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGGCTCCAGAGCTCTT	NA	False	NA	18	True	AATAAA	-18	NA	56062294	56071400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_56062594_56063614_56064711_56066059_56066223_56066821_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679_56070262_56071013
ENSMUSG00000023411.13_20	chr14	+	3360	8	ISM	ENSMUSG00000023411.13	ENSMUST00000226357.2	2680	10	670	-302	-567	-2	intron_retention	FALSE	canonical	3	29	junction_4	5.89015089373951	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCTCAGGCTCCAGAGC	NA	False	NA	14	True	AATAAA	-14	NA	56063927	56071396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56064711_56066059_56066223_56066821_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679
ENSMUSG00000023411.13_26	chr14	+	2398	6	ISM	ENSMUSG00000023411.13	ENSMUST00000226357.2	2680	10	3580	-302	-88	-2	intron_retention	FALSE	canonical	3	29	junction_2	5.62138772902208	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCTCAGGCTCCAGAGC	NA	False	NA	14	True	AATAAA	-14	NA	56066837	56071396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679
ENSMUSG00000023411.13_29	chr14	+	1971	3	FSM	ENSMUSG00000023411.13	ENSMUST00000226293.2	2969	3	1313	-315	1313	-2	multi-exon	FALSE	canonical	3	42	junction_1	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCTCAGGCTCCAGAGC	NA	False	NA	14	True	AATAAA	-14	NA	56069038	56071396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_56069166_56069404_56069532_56069679
ENSMUSG00000023411.13_3	chr14	+	3905	9	FSM	ENSMUSG00000023411.13	ENSMUST00000172271.9	3775	9	-132	2	110	-2	multi-exon	FALSE	canonical	3	29	junction_5	5.95818764390649	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCTCAGGCTCCAGAGC	NA	False	NA	14	True	AATAAA	-14	NA	56062361	56071396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_56062594_56063614_56064711_56066059_56066223_56066821_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679
ENSMUSG00000023411.13_32	chr14	+	572	1	NIC	ENSMUSG00000023411.13	novel	3267	10	NA	NA	3102	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCAGGCTCCAGAGCTCT	NA	False	NA	17	True	AATAAA	-17	NA	56070827	56071399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_56070800_56071400
ENSMUSG00000023411.13_8	chr14	+	3899	10	NNC	ENSMUSG00000023411.13	novel	3775	9	NA	NA	88	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	13.7688142885864	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCTCAGGCTCCAGAGC	NA	False	NA	14	True	AATAAA	-14	NA	56062339	56071396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_56062594_56063614_56064711_56066059_56066223_56066821_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679_56070413_56070440
ENSMUSG00000023443.14_0	chrX	-	1090	3	ISM	ENSMUSG00000023443.14	ENSMUST00000113066.9	1692	4	1366	4	1366	-4	3prime_fragment	FALSE	canonical	3	47	junction_1	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATATTGGCTTTGAGAGT	NA	False	NA	-5	True	AATAAA	-14	NA	136019554	136016149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_136016755_136018006_136018053_136019115
ENSMUSG00000023443.14_2	chrX	-	1329	4	FSM	ENSMUSG00000023443.14	ENSMUST00000113066.9	1692	4	359	4	359	-4	multi-exon	FALSE	canonical	3	42	junction_3	6.23609564462324	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATATTGGCTTTGAGAGT	NA	False	NA	-5	True	AATAAA	-14	NA	136020561	136016149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_136016755_136018006_136018053_136019115_136019552_136020319
ENSMUSG00000023443.14_4	chrX	-	1404	5	FSM	ENSMUSG00000023443.14	ENSMUST00000074698.3	1600	5	195	1	40	-1	multi-exon	FALSE	canonical	3	9	junction_4	18.0052075800308	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGGCTTTGAGAGTTAT	NA	False	NA	-2	True	AATAAA	-17	NA	136020880	136016146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_136016755_136018006_136018053_136019115_136019552_136020319_136020446_136020692
ENSMUSG00000023452.20_3	chr5	-	2140	8	FSM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	22	21	2	0	multi-exon	FALSE	canonical	3	685	junction_2	53.5235976948867	826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAAACAAAAACT	NA	False	NA	NA	False	NA	NA	NA	32942968	32893665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ENSMUSG00000023456.17_0	chr6	-	1338	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	139	124	1	-124	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	1365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTGTGGGTTGTCATAA	NA	False	NA	-8	True	AATAAA	-13	NA	124791120	124787678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUSG00000023460.14_0	chr17	-	2049	6	FSM	ENSMUSG00000023460.14	ENSMUST00000070538.12	2069	6	13	7	-6	-7	multi-exon	FALSE	canonical	3	199	junction_3	22.1720544830649	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACAGTTGAATTTGCCG	NA	False	NA	-11	True	AATAAA	-15	NA	66826711	66801513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_66802799_66804338_66804444_66805013_66805104_66807304_66807444_66813027_66813089_66826342
ENSMUSG00000023460.14_1	chr17	-	2237	7	NIC	ENSMUSG00000023460.14	novel	2069	6	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	101.840425284963	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGTTGAATTTGCCGTGT	NA	False	NA	-8	True	AATAAA	-18	NA	66826706	66801510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_66802799_66804338_66804444_66805013_66805104_66807304_66807444_66811983_66812174_66813027_66813089_66826342
ENSMUSG00000023460.14_4	chr17	-	1029	1	ISM	ENSMUSG00000023460.14	ENSMUST00000167962.2	2010	6	24127	3	4776	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGAATTTGCCGTGTG	NA	False	NA	-7	True	AATAAA	-19	NA	66802538	66801509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66801500_66802500
ENSMUSG00000023467.19_13	chr7	+	1313	8	ISM	ENSMUSG00000023467.19	ENSMUST00000085331.14	1525	10	1914	5	708	-3	3prime_fragment	FALSE	canonical	3	20	junction_3	22.1423963085686	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAACTCTGTTCTGTGCGT	1992	False	NA	12	True	AATAAA	-13	NA	45165939	45171801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45166111_45167203_45167392_45168009_45168310_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ENSMUSG00000023467.19_15	chr7	+	1455	9	ISM	ENSMUSG00000023467.19	ENSMUST00000210868.2	1664	11	1880	0	709	0	3prime_fragment	FALSE	canonical	3	4	junction_8	26.7111282988945	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAAAAAAGGCAGT	1993	False	NA	NA	False	AATAAA	-10	NA	45165940	45173056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45166111_45167203_45167392_45168009_45168310_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646_45171773_45172884
ENSMUSG00000023467.19_16	chr7	+	1012	7	NIC	ENSMUSG00000023467.19	novel	1675	10	NA	NA	709	-3	combination_of_known_splicesites	FALSE	canonical	2	2	junction_2	27.8532862613293	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAACTCTGTTCTGTGCGT	1993	False	NA	12	True	AATAAA	-13	NA	45165940	45171801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45166111_45167203_45167392_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ENSMUSG00000023467.19_17	chr7	+	1549	8	ISM	ENSMUSG00000023467.19	ENSMUST00000107758.10	1597	10	30153	-211	709	-1	3prime_fragment	FALSE	canonical	3	17	junction_3	22.8339167709362	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTTTAGTTAGTGTAC	1993	False	NA	NA	False	NA	NA	NA	45165940	45172017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45166111_45167203_45167392_45168009_45168331_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ENSMUSG00000023467.19_18	chr7	+	896	6	ISM	ENSMUSG00000023467.19	ENSMUST00000107758.10	1597	10	32301	5	2857	-3	3prime_fragment	FALSE	canonical	3	17	junction_1	22.9381777829016	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAACTCTGTTCTGTGCGT	4141	False	NA	12	True	AATAAA	-13	NA	45168088	45171801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45168331_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ENSMUSG00000023467.19_19	chr7	+	976	6	ISM	ENSMUSG00000023467.19	ENSMUST00000210868.2	1664	11	4915	0	3744	0	3prime_fragment	FALSE	canonical	3	4	junction_5	28.0756121927911	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAAAAAAGGCAGT	5028	False	NA	NA	False	AATAAA	-10	NA	45168975	45173056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646_45171773_45172884
ENSMUSG00000023467.19_21	chr7	+	771	5	ISM	ENSMUSG00000023467.19	ENSMUST00000085331.14	1525	10	5014	3	3808	-1	3prime_fragment	FALSE	canonical	3	69	junction_2	4.38748219369606	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTCTGTTCTGTGCGTTT	5092	False	NA	14	True	AATAAA	-15	NA	45169039	45171803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ENSMUSG00000023473.14_2	chr9	+	3928	12	ISM	ENSMUSG00000023473.14	ENSMUST00000213524.3	11571	36	16825	8	-90	-8	3prime_fragment	FALSE	canonical	1	2	junction_4	2.83717936987768	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACACTTGTTCCTCTT	NA	False	NA	1	True	AATAAA	-8	NA	108720343	108730160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108720500_108720742_108720918_108721124_108721238_108721661_108721742_108722240_108722368_108722900_108723018_108723112_108723262_108723518_108723629_108723906_108724066_108724743_108724945_108725794_108726675_108728499
ENSMUSG00000023473.14_3	chr9	+	3940	11	ISM	ENSMUSG00000023473.14	ENSMUST00000024238.11	11547	35	17051	10	118	-10	3prime_fragment	FALSE	canonical	0	0	junction_3	3.22645316098034	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAAAACACTTGTTCCTC	NA	False	NA	-1	True	AATAAA	-6	NA	108720569	108730158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108720918_108721124_108721238_108721661_108721742_108722243_108722368_108722900_108723018_108723112_108723262_108723518_108723629_108723906_108724066_108724743_108724945_108725794_108726675_108728499
ENSMUSG00000023473.14_4	chr9	+	3265	7	ISM	ENSMUSG00000023473.14	ENSMUST00000024238.11	11547	35	19394	8	2461	-8	3prime_fragment	FALSE	canonical	3	5	junction_4	1.7950549357115	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACACTTGTTCCTCTT	NA	False	NA	1	True	AATAAA	-8	NA	108722912	108730160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108723018_108723112_108723262_108723518_108723629_108723906_108724066_108724743_108724945_108725794_108726675_108728499
ENSMUSG00000023484.15_0	chr15	+	1762	9	FSM	ENSMUSG00000023484.15	ENSMUST00000024249.5	1757	9	-8	3	-1	-3	multi-exon	FALSE	canonical	3	16	junction_2	6.35290287978653	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCCTTACTGTGTTGGT	-9	True	NA	3	True	AATAAA	-15	NA	98953053	98956851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_98953645_98953984_98954046_98954221_98954318_98954649_98954818_98954913_98955040_98955138_98955360_98955448_98955499_98955696_98955777_98956482
ENSMUSG00000023484.15_2	chr15	+	1874	8	FSM	ENSMUSG00000023484.15	ENSMUST00000047104.15	1863	8	-22	11	-21	-7	multi-exon	FALSE	canonical	3	16	junction_2	6.60859057498307	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAACTCCTTACTGTGT	NA	False	NA	-1	True	AATAAA	-11	NA	98953033	98956847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_98953645_98953984_98954046_98954221_98954318_98954649_98955040_98955138_98955360_98955448_98955499_98955696_98955777_98956482
ENSMUSG00000023484.15_3	chr15	+	1337	8	ISM	ENSMUSG00000023484.15	ENSMUST00000024249.5	1757	9	755	5	-34	-5	3prime_fragment	FALSE	canonical	3	16	junction_1	6.19743198956682	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTCCTTACTGTGTTG	60	False	NA	1	True	AATAAA	-13	NA	98953816	98956849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98954046_98954221_98954318_98954649_98954818_98954913_98955040_98955138_98955360_98955448_98955499_98955696_98955777_98956482
ENSMUSG00000023484.15_5	chr15	+	932	6	ISM	ENSMUSG00000023484.15	ENSMUST00000024249.5	1757	9	1673	0	884	0	3prime_fragment	FALSE	canonical	3	19	junction_5	5.95315042645489	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTACTGTGTTGGTCTG	978	False	NA	6	True	AATAAA	-18	NA	98954734	98956854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98954818_98954913_98955040_98955138_98955360_98955448_98955499_98955696_98955777_98956482
ENSMUSG00000023495.14_3	chr9	+	2027	13	FSM	ENSMUSG00000023495.14	ENSMUST00000024260.14	2035	13	3	5	0	-5	multi-exon	FALSE	canonical	3	316	junction_11	32.902212016148	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGCTGTGCAGTAATAC	1603	False	NA	22	True	AATAAA	-15	NA	106331043	106341206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
ENSMUSG00000023495.14_7	chr9	+	1829	13	NIC	ENSMUSG00000023495.14	novel	2035	13	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	3	30	junction_12	99.8749217771909	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGAAAGCTGTGCAGTAA	1601	False	NA	19	True	AATAAA	-12	NA	106331041	106341203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340526
ENSMUSG00000023505.14_0	chr6	+	1013	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	537	426	8	-257	multi-exon	FALSE	canonical	0	0	junction_3	347.474660946665	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGATGCTTTAAGAAGTT	1352	False	NA	26	True	ATTAAA	-13	NA	124807187	124810238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_1	chr6	+	1157	6	NIC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	3	-257	intron_retention	FALSE	canonical	0	0	junction_3	431.365552634885	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGATGCTTTAAGAAGTT	1347	False	NA	26	True	ATTAAA	-13	NA	124807182	124810238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_124807237_124807326_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_2	chr6	+	1669	5	FSM	ENSMUSG00000023505.14	ENSMUST00000134637.8	1917	5	-9	257	9	-257	multi-exon	FALSE	canonical	3	695	junction_1	91.4969261778777	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGATGCTTTAAGAAGTT	1353	False	NA	26	True	ATTAAA	-13	NA	124807188	124810238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124807237_124807465_124807614_124808324_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_24	chr6	+	965	5	ISM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	814	426	127	-257	3prime_fragment	FALSE	canonical	0	0	junction_2	388.333941344302	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGATGCTTTAAGAAGTT	1629	False	NA	26	True	ATTAAA	-13	NA	124807464	124810238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_31	chr6	+	194	1	ISM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	3399	421	2712	-252	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCTTTAAGAAGTTAGAGC	307	False	NA	31	True	ATTAAA	-18	NA	124810049	124810243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_124810000_124810200
ENSMUSG00000023571.5_1	chr4	+	1301	8	FSM	ENSMUSG00000023571.5	ENSMUST00000024338.5	1315	8	8	6	8	2	multi-exon	FALSE	canonical	3	21	junction_4	2.37332110369088	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGCTCTTGGGTGCACTCT	NA	False	NA	4	True	AATAAA	-18	NA	156046782	156051080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_156047195_156048999_156049117_156049224_156049346_156049436_156049589_156050050_156050160_156050322_156050414_156050538_156050618_156050860
ENSMUSG00000023571.5_4	chr4	+	738	1	NIC	ENSMUSG00000023571.5	novel	1315	8	NA	NA	786	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATCGCTCTTGGGTGCAC	NA	False	NA	1	True	AATAAA	-15	NA	156050339	156051077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_156050300_156051100
ENSMUSG00000023572.17_0	chr2	+	1506	11	FSM	ENSMUSG00000023572.17	ENSMUST00000060455.15	1569	11	50	13	5	-13	multi-exon	FALSE	canonical	3	138	junction_6	15.0811140172071	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAATGTGTCATTTAATG	NA	False	NA	8	True	AATAAA	-17	NA	120838933	120847372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120839091_120839198_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
ENSMUSG00000023572.17_7	chr2	+	1606	10	FSM	ENSMUSG00000023572.17	ENSMUST00000099489.9	1632	10	13	13	-6	-13	multi-exon	FALSE	canonical	3	138	junction_5	15.8464857653396	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAATGTGTCATTTAATG	NA	False	NA	8	True	AATAAA	-17	NA	120838941	120847372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
ENSMUSG00000023707.14_1	chr5	+	1562	7	FSM	ENSMUSG00000023707.14	ENSMUST00000024470.13	1596	7	25	9	1	-2	multi-exon	FALSE	canonical	3	59	junction_5	17.423642940939	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACCCCTCTGTTTGCT	NA	False	NA	3	True	TATAAA	-8	NA	124250384	124253537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252450_124252709_124252777
ENSMUSG00000023707.14_10	chr5	+	1826	5	FSM	ENSMUSG00000023707.14	ENSMUST00000131094.8	708	5	-18	-1100	1	-2	multi-exon	FALSE	canonical	3	73	junction_4	13.2759180473518	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACCCCTCTGTTTGCT	NA	False	NA	3	True	TATAAA	-8	NA	124250384	124253537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127
ENSMUSG00000023707.14_11	chr5	+	1762	6	NIC	ENSMUSG00000023707.14	novel	1596	7	NA	NA	1	3	intron_retention	FALSE	canonical	3	73	junction_4	13.9914259459142	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCTCTGTTTGCTATTAT	NA	False	NA	8	True	TATAAA	-13	NA	124250384	124253542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252709_124252777
ENSMUSG00000023707.14_15	chr5	+	1813	5	NIC	ENSMUSG00000023707.14	novel	818	6	NA	NA	-4	0	intron_retention	FALSE	canonical	3	23	junction_3	31.4841229828623	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCCTCTGTTTGCTAT	NA	False	NA	5	True	TATAAA	-10	NA	124250379	124253539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_124250530_124250851_124251395_124251491_124251592_124252450_124252709_124252777
ENSMUSG00000023707.14_2	chr5	+	1038	6	FSM	ENSMUSG00000023707.14	ENSMUST00000198770.2	818	6	-114	-106	-4	-12	multi-exon	FALSE	canonical	3	23	junction_4	30.8506077735918	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGACACGCAGACTTTT	NA	False	NA	13	True	AATAAA	-28	NA	124250379	124253136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252450_124252709_124252777
ENSMUSG00000023707.14_4	chr5	+	2032	6	NIC	ENSMUSG00000023707.14	novel	1596	7	NA	NA	-71	0	intron_retention	TRUE	canonical	3	59	junction_4	16.2308348522188	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCCTCTGTTTGCTAT	NA	False	NA	5	True	TATAAA	-10	NA	124250288	124253539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_124250530_124250851_124251395_124251491_124251592_124252127_124252256_124252450_124252709_124252777
ENSMUSG00000023707.14_5	chr5	+	1082	7	FSM	ENSMUSG00000023707.14	ENSMUST00000119269.6	1474	7	-11	403	-11	-12	multi-exon	FALSE	canonical	2	14	junction_5	31.3421973277773	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGACACGCAGACTTTT	NA	False	NA	13	True	AATAAA	-28	NA	124250372	124253136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252541_124252709_124252777
ENSMUSG00000023707.14_6	chr5	+	2762	3	NIC	ENSMUSG00000023707.14	novel	818	6	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	94	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACCCCTCTGTTTGCT	NA	False	NA	3	True	TATAAA	-8	NA	124250356	124253537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_124250530_124250851_124251395_124251491
ENSMUSG00000023707.14_7	chr5	+	2302	5	NIC	ENSMUSG00000023707.14	novel	818	6	NA	NA	-3	3	intron_retention	FALSE	canonical	3	76	junction_4	12.0701077045733	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCTCTGTTTGCTATTAT	NA	False	NA	8	True	TATAAA	-13	NA	124250380	124253542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124252709_124252777
ENSMUSG00000023707.14_8	chr5	+	1631	6	ISM	ENSMUSG00000023707.14	ENSMUST00000024470.13	1596	7	25	9	1	-2	intron_retention	FALSE	canonical	3	59	junction_5	18.5105375394665	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACCCCTCTGTTTGCT	NA	False	NA	3	True	TATAAA	-8	NA	124250384	124253537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252450
ENSMUSG00000023723.18_1	chr11	+	1290	5	FSM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	35	7	-1	-7	multi-exon	FALSE	canonical	3	245	junction_1	23.6999472573253	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGATTTGGCTCTCTAT	NA	False	NA	12	True	AATAAA	-12	NA	88095248	88102326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_88095312_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUSG00000023723.18_10	chr11	+	1201	4	ISM	ENSMUSG00000023723.18	ENSMUST00000118784.8	1404	5	804	7	771	-7	3prime_fragment	FALSE	canonical	3	277	junction_2	16.0485374896143	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGATTTGGCTCTCTAT	NA	False	NA	12	True	AATAAA	-12	NA	88096040	88102326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUSG00000023723.18_11	chr11	+	780	1	ISM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	6337	3	6281	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTGGCTCTCTATTTGT	2253	False	NA	16	True	AATAAA	-16	NA	88101550	88102330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_88101600_88102300
ENSMUSG00000023723.18_4	chr11	+	1391	5	FSM	ENSMUSG00000023723.18	ENSMUST00000118784.8	1404	5	12	1	-1	-1	multi-exon	FALSE	canonical	3	37	junction_1	110.143939915004	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGCTCTCTATTTGTGG	NA	False	NA	18	True	AATAAA	-18	NA	88095248	88102332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_88095407_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUSG00000023755.11_0	chr15	-	1124	8	FSM	ENSMUSG00000023755.11	ENSMUST00000024518.11	1261	8	136	1	-10	-1	multi-exon	FALSE	canonical	3	165	junction_2	21.3388598283861	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTGTGTCTGGAGAGAG	NA	False	NA	-23	True	AATAAA	-19	NA	98779225	98775659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
ENSMUSG00000023755.11_1	chr15	-	1626	7	ISM	ENSMUSG00000023755.11	ENSMUST00000229352.2	1604	8	12535	1	-39	-1	3prime_fragment	FALSE	canonical	3	176	junction_2	18.3212081115484	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTGTGTCTGGAGAGAG	NA	False	NA	-23	True	AATAAA	-19	NA	98779254	98775659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98776179_98776333_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
ENSMUSG00000023755.11_10	chr15	-	3378	2	ISM	ENSMUSG00000023755.11	ENSMUST00000229348.2	1069	8	-37	3	21	-3	intron_retention	FALSE	canonical	3	177	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGTTTGTGTCTGGAGAG	NA	False	NA	-25	True	AATAAA	-17	NA	98779194	98775661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98776179_98776333
ENSMUSG00000023755.11_11	chr15	-	1102	7	NIC	ENSMUSG00000023755.11	novel	1261	8	NA	NA	-38	-3	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	74.1117774416155	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGTTTGTGTCTGGAGAG	NA	False	NA	-25	True	AATAAA	-17	NA	98779253	98775661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_98776179_98776333_98776416_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
ENSMUSG00000023755.11_2	chr15	-	1261	8	FSM	ENSMUSG00000023755.11	ENSMUST00000147015.2	1038	8	44	-267	44	-1	multi-exon	FALSE	canonical	3	19	junction_7	64.8753907620649	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTGTGTCTGGAGAGAG	NA	False	NA	-23	True	AATAAA	-19	NA	98778927	98775659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98778595
ENSMUSG00000023755.11_24	chr15	-	2572	4	NIC	ENSMUSG00000023755.11	novel	1604	8	NA	NA	15	-5	intron_retention	FALSE	canonical	3	177	junction_1	19.3964487013015	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACGTTTGTGTCTGGAG	NA	False	NA	-27	True	AATAAA	-15	NA	98779142	98775663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_98776179_98776333_98777197_98777285_98777726_98778388
ENSMUSG00000023755.11_4	chr15	-	1721	7	ISM	ENSMUSG00000023755.11	ENSMUST00000024518.11	1261	8	109	1	-37	-1	intron_retention	FALSE	canonical	3	165	junction_2	22.4028767993954	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTGTGTCTGGAGAGAG	NA	False	NA	-23	True	AATAAA	-19	NA	98779252	98775659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388
ENSMUSG00000023755.11_5	chr15	-	1128	8	FSM	ENSMUSG00000023755.11	ENSMUST00000229348.2	1069	8	-60	1	-2	-1	multi-exon	FALSE	canonical	3	5	junction_5	69.0784824290016	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTGTGTCTGGAGAGAG	NA	False	NA	-23	True	AATAAA	-19	NA	98779217	98775659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777645_98777726_98778388_98778461_98779030
ENSMUSG00000023764.19_1	chr11	-	3876	33	FSM	ENSMUSG00000023764.19	ENSMUST00000081318.13	3969	33	-7	100	-3	-60	multi-exon	FALSE	canonical	0	0	junction_15	28.2531628483874	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTTGTTTTGTTTTGTT	8028	False	NA	-64	True	NA	NA	NA	3143414	3081949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3082132_3082215_3082328_3082886_3082966_3083071_3083208_3084317_3084502_3084625_3084731_3085282_3085543_3085653_3085831_3085942_3086018_3086624_3086700_3086945_3087107_3090136_3090234_3092307_3092411_3093259_3093337_3093694_3093791_3094216_3094293_3094791_3094971_3095240_3095323_3096161_3096293_3103431_3103499_3105398_3105497_3106771_3106865_3107865_3107937_3109984_3110147_3114556_3114714_3115575_3115679_3120586_3120705_3127426_3127522_3129396_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ENSMUSG00000023764.19_17	chr11	-	658	5	ISM	ENSMUSG00000023764.19	ENSMUST00000138126.8	2916	22	-11	44350	7	6286	5prime_fragment	FALSE	canonical	3	72	junction_1	15.833114033569	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTTTTAAAAATCCTTTT	8010	False	NA	NA	False	AGTAAA	-18	NA	3143432	3129281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ENSMUSG00000023764.19_2	chr11	-	3854	32	FSM	ENSMUSG00000023764.19	ENSMUST00000066391.14	3898	32	37	7	-2	0	multi-exon	TRUE	canonical	2	8	junction_15	27.928964448237	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCTCCTACTTTTCAT	8016	False	NA	-2	True	AATGAA	-15	NA	3143426	3081887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3082132_3082215_3082328_3082886_3082966_3083071_3083208_3084317_3084502_3084625_3084731_3085282_3085543_3085653_3085831_3085942_3086018_3086624_3086700_3086945_3087107_3090136_3090234_3092307_3092411_3093259_3093337_3094216_3094293_3094791_3094971_3095240_3095323_3096161_3096293_3103431_3103499_3105398_3105497_3106771_3106865_3107865_3107937_3109984_3110147_3114556_3114714_3115575_3115679_3120586_3120705_3127426_3127522_3129396_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ENSMUSG00000023764.19_20	chr11	-	820	5	FSM	ENSMUSG00000023764.19	ENSMUST00000118627.2	831	5	11	0	-2	0	multi-exon	FALSE	canonical	3	18	junction_1	37.5724300518346	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACACTCTGCACTTTGTT	8029	False	NA	NA	False	NA	NA	NA	3143413	3135567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3135975_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ENSMUSG00000023764.19_23	chr11	-	4866	31	NIC	ENSMUSG00000023764.19	novel	3898	32	NA	NA	2	0	intron_retention	FALSE	canonical	2	8	junction_15	28.0733364996436	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCTCCTACTTTTCAT	8005	False	NA	-2	True	AATGAA	-15	NA	3143437	3081887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_3082132_3082215_3082328_3082886_3082966_3083071_3083208_3084317_3084502_3084625_3084731_3085282_3085543_3085653_3085831_3085942_3086018_3086624_3086700_3086945_3087107_3090136_3090234_3092307_3092411_3093259_3093337_3094216_3094293_3094791_3094971_3095240_3095323_3096161_3096293_3103431_3103499_3105398_3105497_3106771_3107937_3109984_3110147_3114556_3114714_3115575_3115679_3120586_3120705_3127426_3127522_3129396_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ENSMUSG00000023764.19_8	chr11	-	1842	14	ISM	ENSMUSG00000023764.19	ENSMUST00000081318.13	3969	33	50113	39	-916	0	3prime_fragment	FALSE	canonical	3	10	junction_6	17.5526258592899	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGTCTCCTACTTTTCA	7990	False	NA	-3	True	AATGAA	-14	NA	3093294	3081888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_3082132_3082215_3082328_3082886_3082966_3083071_3083208_3084317_3084502_3084625_3084731_3085282_3085543_3085653_3085831_3085942_3086018_3086624_3086700_3086945_3087107_3090136_3090234_3092307_3092411_3093259
ENSMUSG00000023791.19_0	chr16	-	982	6	FSM	ENSMUSG00000023791.19	ENSMUST00000096109.11	993	6	13	-2	2	-2	multi-exon	FALSE	canonical	3	398	junction_3	17.8258239641258	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAACTGGTTAGTTTGTC	NA	False	NA	-6	True	AATAAA	-24	NA	31918543	31903239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918287
ENSMUSG00000023791.19_1	chr16	-	962	6	FSM	ENSMUSG00000023791.19	ENSMUST00000189013.8	982	6	14	6	-2	0	multi-exon	FALSE	canonical	3	94	junction_5	129.408500493592	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTAACTGGTTAGTTTG	NA	False	NA	-8	True	AATAAA	-22	NA	31918531	31903241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918293
ENSMUSG00000023791.19_10	chr16	-	756	5	FSM	ENSMUSG00000023791.19	ENSMUST00000147688.8	713	5	-8	-35	-4	0	multi-exon	FALSE	canonical	3	25	junction_2	176.233332545237	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTAACTGGTTAGTTTG	NA	False	NA	-8	True	AATAAA	-22	NA	31918533	31903241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31915817_31915882_31918287
ENSMUSG00000023791.19_11	chr16	-	1144	7	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_5	171.687377391454	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTAACTGGTTAGTTTG	NA	False	NA	-8	True	AATAAA	-22	NA	31918551	31903241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31914370_31914527_31915817_31915882_31918287
ENSMUSG00000023791.19_12	chr16	-	914	5	NIC	ENSMUSG00000023791.19	novel	982	6	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_4	167.537309277665	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGTTAGTTTGTCTTCA	NA	False	NA	-2	True	AATAAA	-28	NA	31918535	31903235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31918287
ENSMUSG00000023805.18_6	chr17	+	5300	25	ISM	ENSMUSG00000023805.18	ENSMUST00000080283.13	4793	26	34316	-606	-21	-7	3prime_fragment	FALSE	canonical	2	9	junction_23	3.86198531270583	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCATACTGGCCCATC	NA	False	NA	NA	False	TATAAA	-14	NA	6025993	6089436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_6026157_6036246_6036518_6040410_6040637_6047152_6047237_6053373_6053436_6055597_6055695_6058212_6058386_6060006_6060089_6060670_6060821_6060934_6061101_6063782_6063975_6066540_6066623_6067761_6067903_6069560_6069754_6072373_6072533_6073933_6074091_6075258_6075377_6076430_6076650_6076751_6076831_6077421_6077591_6078693_6078862_6082971_6083085_6084089_6084199_6085685_6085835_6087658
ENSMUSG00000023805.18_8	chr17	+	4668	25	NIC	ENSMUSG00000023805.18	novel	4808	26	NA	NA	-5	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	4.82974004361403	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTGTTCTGACCCACTT	NA	False	NA	NA	False	ATTAAA	-18	NA	6026009	6088831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6026157_6036246_6036518_6040410_6040637_6047152_6047237_6053373_6053436_6055597_6055695_6058212_6058375_6060006_6060089_6060670_6060821_6060934_6061101_6063782_6063975_6066540_6066623_6067761_6067903_6069560_6069754_6072373_6072533_6073933_6074091_6075258_6075377_6076430_6076650_6076751_6076831_6077421_6077591_6078693_6078862_6082971_6083085_6084089_6084199_6085685_6085835_6087658
ENSMUSG00000023805.18_9	chr17	+	3772	25	NIC	ENSMUSG00000023805.18	novel	4072	26	NA	NA	75	9	combination_of_known_junctions	FALSE	canonical	0	0	junction_24	4.84320113377735	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAACTCTGACTCCCTG	NA	False	NA	NA	False	AATAAA	-24	NA	6026089	6094574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6026157_6036246_6036518_6040410_6040637_6047152_6047237_6053373_6053436_6055597_6055695_6058212_6058386_6060006_6060089_6060670_6060821_6060934_6061101_6063782_6063975_6066540_6066623_6067761_6067903_6069560_6069754_6072373_6072533_6073933_6074091_6075258_6075377_6076430_6076650_6076751_6076831_6077421_6077591_6078693_6078862_6082971_6083085_6084089_6084199_6085685_6085835_6094228
ENSMUSG00000023806.11_0	chr17	-	1565	8	FSM	ENSMUSG00000023806.11	ENSMUST00000024572.10	1614	8	7	42	7	-42	multi-exon	FALSE	canonical	2	7	junction_1	24.1119836409624	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAATAAAATAAA	NA	False	NA	NA	False	ACTAAA	-39	NA	7215748	7172156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_7172520_7172831_7172919_7175430_7175594_7177506_7177711_7178676_7178823_7181355_7181498_7209067_7209156_7215376
ENSMUSG00000023806.11_1	chr17	-	2408	7	NIC	ENSMUSG00000023806.11	novel	2243	8	NA	NA	72	-25	intron_retention	TRUE	canonical	2	7	junction_1	26.0346990678893	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGACACTTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	7215608	7172139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_7172520_7172831_7172919_7175430_7175594_7177506_7178823_7181355_7181498_7209067_7209156_7215376
ENSMUSG00000023806.11_6	chr17	-	1895	1	Genic_Genomic	ENSMUSG00000023806.11	novel	NA	NA	NA	NA	-41	-25960	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAAAGCATTTGAATAC	NA	False	NA	NA	False	AATAAA	-12	NA	7216122	7214227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_7214200_7216100
ENSMUSG00000023809.11_1	chr17	+	5386	21	FSM	ENSMUSG00000023809.11	ENSMUST00000024575.8	5406	21	12	8	0	-8	multi-exon	FALSE	canonical	3	147	junction_19	15.0827716285834	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTAATATTTTTCTGGG	NA	False	NA	NA	False	AATAAA	-14	NA	7437525	7570706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_7437843_7495311_7495429_7503444_7503527_7514100_7514182_7516690_7516771_7518938_7519046_7521810_7521849_7523229_7523373_7528402_7528474_7529526_7529616_7538990_7539056_7544861_7544965_7549167_7549299_7550142_7550269_7556313_7556404_7558028_7558188_7560144_7560307_7562601_7562679_7563413_7563532_7566681_7566820_7567614
ENSMUSG00000023809.11_39	chr17	+	2083	1	ISM	ENSMUSG00000023809.11	ENSMUST00000024575.8	5406	21	131115	3	40594	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATTTTTCTGGGATAAT	NA	False	NA	NA	False	AATAAA	-19	NA	7568628	7570711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_7568600_7570700
ENSMUSG00000023826.17_1	chr17	+	2119	3	NNC	ENSMUSG00000023826.17	novel	3202	12	NA	NA	14777	-4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	0.5	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAGAATCAAAAGCGT	NA	False	NA	NA	False	AATAAA	-14	NA	12263579	12282241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_12263767_12269512_12269631_12280427
ENSMUSG00000023827.9_16	chr17	+	1776	8	ISM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	32410	5	-78	-5	3prime_fragment	FALSE	canonical	3	218	junction_2	26.7146676825252	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTGTGGCAAGTGTTTA	NA	False	NA	23	True	ATTAAA	-14	NA	12370580	12438527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
ENSMUSG00000023827.9_2	chr17	+	1838	9	NIC	ENSMUSG00000023827.9	novel	967	7	NA	NA	77	-5	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	85.5599205235722	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTGTGGCAAGTGTTTA	NA	False	NA	23	True	ATTAAA	-14	NA	12337667	12438527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_12337728_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
ENSMUSG00000023827.9_3	chr17	+	1878	9	FSM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	32	5	-13	-5	multi-exon	FALSE	canonical	3	218	junction_3	26.473748790075	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTGTGGCAAGTGTTTA	NA	False	NA	23	True	ATTAAA	-14	NA	12338202	12438527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
ENSMUSG00000023830.15_0	chr17	-	3793	14	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	72151	7	3766	-7	3prime_fragment	FALSE	canonical	3	174	junction_10	27.2989151658224	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGGTGTAAGTGACTCA	-2	True	NA	-7	True	AATAAA	-12	NA	12916400	12901299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769_12911005_12911525_12911673_12911960_12912169_12912889_12913052_12914172_12914323_12916211
ENSMUSG00000023830.15_14	chr17	-	3010	10	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	76953	7	8568	-7	3prime_fragment	FALSE	canonical	3	195	junction_5	18.5079228947103	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGGTGTAAGTGACTCA	5213	False	NA	-7	True	AATAAA	-12	NA	12911598	12901299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769_12911005_12911525
ENSMUSG00000023830.15_15	chr17	-	3217	11	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	76458	7	8073	-7	3prime_fragment	TRUE	canonical	3	174	junction_10	25.9932683593272	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGGTGTAAGTGACTCA	4718	False	NA	-7	True	AATAAA	-12	NA	12912093	12901299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769_12911005_12911525_12911673_12911960
ENSMUSG00000023830.15_16	chr17	-	4442	18	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	69208	7	823	-7	3prime_fragment	FALSE	canonical	3	160	junction_16	30.1679267804132	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGGTGTAAGTGACTCA	NA	False	NA	-7	True	AATAAA	-12	NA	12919343	12901299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769_12911005_12911525_12911673_12911960_12912169_12912889_12913052_12914172_12914323_12916211_12916431_12916972_12917230_12917411_12917532_12918066_12918194_12919228
ENSMUSG00000023830.15_19	chr17	-	2866	9	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	77618	7	9233	-7	3prime_fragment	FALSE	canonical	3	195	junction_5	19.536824204563	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGGTGTAAGTGACTCA	5878	False	NA	-7	True	AATAAA	-12	NA	12910933	12901299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769
ENSMUSG00000023830.15_21	chr17	-	5465	25	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	64666	8	-3719	-8	3prime_fragment	FALSE	canonical	3	128	junction_23	35.4435192320903	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTAGGTGTAAGTGACTC	NA	False	NA	-8	True	AATAAA	-11	NA	12923885	12901300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769_12911005_12911525_12911673_12911960_12912169_12912889_12913052_12914172_12914323_12916211_12916431_12916972_12917230_12917411_12917532_12918066_12918194_12919228_12919420_12920106_12920244_12920819_12920918_12921083_12921215_12922247_12922464_12923158_12923247_12923519_12923696_12923783
ENSMUSG00000023830.15_3	chr17	-	5031	22	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	66157	7	-2228	-7	3prime_fragment	FALSE	canonical	3	153	junction_21	31.0574042424129	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGGTGTAAGTGACTCA	NA	False	NA	-7	True	AATAAA	-12	NA	12922394	12901299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769_12911005_12911525_12911673_12911960_12912169_12912889_12913052_12914172_12914323_12916211_12916431_12916972_12917230_12917411_12917532_12918066_12918194_12919228_12919420_12920106_12920244_12920819_12920918_12921083_12921215_12922247
ENSMUSG00000023830.15_4	chr17	-	8909	48	FSM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	-30	8	-30	-8	multi-exon	FALSE	canonical	3	127	junction_32	38.5858675109275	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTAGGTGTAAGTGACTC	5588	False	NA	-8	True	AATAAA	-11	NA	12988581	12901300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769_12911005_12911525_12911673_12911960_12912169_12912889_12913052_12914172_12914323_12916211_12916431_12916972_12917230_12917411_12917532_12918066_12918194_12919228_12919420_12920106_12920244_12920819_12920918_12921083_12921215_12922247_12922464_12923158_12923247_12923519_12923696_12923783_12923928_12924574_12924740_12928265_12928462_12929523_12929629_12930905_12931008_12932847_12933028_12933759_12933929_12934264_12934381_12934759_12934935_12935455_12935604_12936159_12936298_12937538_12937683_12938699_12938838_12941014_12941180_12944201_12944306_12945076_12945243_12945557_12945721_12950294_12950401_12952683_12952814_12954853_12954987_12958173_12958273_12959168_12959294_12967530_12967671_12988286
ENSMUSG00000023830.15_5	chr17	-	4041	15	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	71361	7	2976	-7	3prime_fragment	FALSE	canonical	3	174	junction_10	26.4868084224612	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGGTGTAAGTGACTCA	NA	False	NA	-7	True	AATAAA	-12	NA	12917190	12901299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769_12911005_12911525_12911673_12911960_12912169_12912889_12913052_12914172_12914323_12916211_12916431_12916972
ENSMUSG00000023830.15_6	chr17	-	2520	7	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	79460	10	11075	-10	3prime_fragment	FALSE	canonical	3	195	junction_5	18.0408487112503	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAACTAGGTGTAAGTGAC	7720	False	NA	-10	True	AATAAA	-9	NA	12909091	12901302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018
ENSMUSG00000023830.15_8	chr17	-	1332	1	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	85920	7	17535	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGGTGTAAGTGACTCA	7302	False	NA	-7	True	AATAAA	-12	NA	12902631	12901299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_12901300_12902600
ENSMUSG00000023832.15_1	chr17	-	2174	8	FSM	ENSMUSG00000023832.15	ENSMUST00000159697.2	1800	8	28	-402	28	-3	multi-exon	FALSE	canonical	3	922	junction_2	94.6542580734146	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGCTTCTTGTCAGTGA	NA	False	NA	-3	True	NA	NA	NA	13179230	13161927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881
ENSMUSG00000023832.15_2	chr17	-	2062	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	37	151	10	-3	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	1001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGCTTCTTGTCAGTGA	NA	False	NA	-3	True	NA	NA	NA	13179597	13161927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
ENSMUSG00000023845.8_0	chr17	-	3907	1	ISM	ENSMUSG00000023845.8	ENSMUST00000041047.4	12052	18	99722	9	50234	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACAAATATTGTATGGA	NA	False	NA	NA	False	AATAAA	-8	NA	17745587	17741680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_17741700_17745600
ENSMUSG00000023845.8_1	chr17	-	4716	18	FSM	ENSMUSG00000023845.8	ENSMUST00000041047.4	12052	18	560	6776	2	-1121	multi-exon	FALSE	canonical	3	25	junction_8	4.93557105021248	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGCCTGCTTTAATCC	NA	False	NA	NA	False	AATAAA	-22	NA	17844749	17748447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_17750143_17750738_17750821_17751399_17751541_17757175_17757338_17758781_17758967_17765072_17765230_17766645_17766830_17773131_17773221_17773423_17773585_17783014_17783147_17786944_17787077_17788582_17788697_17791135_17791291_17791887_17792009_17794208_17794341_17795510_17795650_17798793_17799635_17844655
ENSMUSG00000023852.15_11	chr17	+	4909	24	ISM	ENSMUSG00000023852.15	ENSMUST00000024627.14	7916	36	19	16486	12	776	5prime_fragment	FALSE	canonical	3	287	junction_10	32.2930227676305	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATTAGCTTCTA	NA	False	NA	NA	False	AATAAA	-10	NA	15925247	15976386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010_15951280_15952115_15952342_15952800_15952902_15953246_15953426_15954492_15954621_15955889_15956107_15957121_15957212_15958743_15958935_15959767_15959957_15962418_15962582_15963339_15963493_15967396_15967469_15968029_15968180_15969634_15969784_15970109_15970207_15970300_15970397_15972583_15972761_15975182
ENSMUSG00000023852.15_3	chr17	+	6779	36	FSM	ENSMUSG00000023852.15	ENSMUST00000024627.14	7916	36	7	1130	0	-1130	multi-exon	TRUE	canonical	3	278	junction_29	37.9898375240279	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAAAGGATATGTGGGC	NA	False	NA	NA	False	ATTAAA	-5	NA	15925235	15991742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010_15951280_15952115_15952342_15952800_15952902_15953246_15953426_15954492_15954621_15955889_15956107_15957121_15957212_15958743_15958935_15959767_15959957_15962418_15962582_15963339_15963493_15967396_15967469_15968029_15968180_15969634_15969784_15970109_15970207_15970300_15970397_15972583_15972761_15975182_15975344_15977021_15977064_15977878_15978010_15978536_15978676_15978843_15978995_15980589_15980713_15981540_15981670_15982643_15982785_15985104_15985284_15986592_15986690_15987711_15987767_15988827_15989039_15990239
ENSMUSG00000023861.18_0	chr17	+	901	4	NIC	ENSMUSG00000023861.18	novel	958	5	NA	NA	18	-1	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	472.094858641307	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGAGTGTGACTATATA	2173	False	NA	3	True	AATAAA	-17	NA	8502645	8516492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_8502794_8515366_8515464_8515655_8515789_8515969
ENSMUSG00000023861.18_4	chr17	+	968	5	FSM	ENSMUSG00000023861.18	ENSMUST00000124023.8	555	5	-27	-386	-27	0	multi-exon	FALSE	canonical	3	18	junction_2	407.512576493045	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATTTGAGTGTGACTAT	2184	False	NA	0	True	AATAAA	-14	NA	8502656	8516489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_8502794_8512246_8512328_8515366_8515464_8515655_8515789_8515969
ENSMUSG00000023868.18_1	chr17	+	3537	22	FSM	ENSMUSG00000023868.18	ENSMUST00000089085.10	7769	22	-16	4248	-16	0	multi-exon	FALSE	canonical	1	1	junction_6	1.87476377952662	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAGCAAGCAAATCTTGT	NA	False	NA	NA	False	AATAAA	-20	NA	9020508	9201232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_9020978_9117692_9117822_9139335_9139365_9147923_9148045_9149341_9149392_9159972_9160114_9161703_9161860_9163201_9163253_9163767_9163827_9165627_9165680_9168181_9168325_9170328_9170422_9172568_9172756_9180691_9180835_9181719_9181804_9183396_9183548_9186250_9186407_9188359_9188533_9193554_9193667_9195967_9196049_9197736_9197826_9200364
ENSMUSG00000023873.14_0	chr17	+	1844	10	FSM	ENSMUSG00000023873.14	ENSMUST00000151609.2	1853	10	8	1	4	-1	multi-exon	FALSE	canonical	1	1	junction_6	3.01027048536535	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGTTGCGTGCTCACTG	NA	False	NA	NA	False	AATAAA	-17	NA	9207196	9227149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_9207254_9210877_9211585_9212427_9212551_9214029_9214090_9215810_9215936_9219959_9220019_9220601_9220778_9224023_9224078_9224524_9224587_9226728
ENSMUSG00000023873.14_2	chr17	+	1667	9	NIC	ENSMUSG00000023873.14	novel	1853	10	NA	NA	3	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	3.27633560552029	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGGTTGCGTGCTCAC	NA	False	NA	NA	False	AATAAA	-15	NA	9207195	9227147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_9207254_9210877_9211585_9212427_9212551_9214029_9214090_9215810_9215936_9219959_9220019_9224023_9224078_9224524_9224587_9226728
ENSMUSG00000023882.16_0	chr17	+	2081	5	NIC	ENSMUSG00000023882.16	novel	2832	5	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	8.22724133595217	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCGTTTTGTTTTCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	21643509	21655416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_21643580_21647593_21647634_21647998_21648091_21650456_21650584_21653664
ENSMUSG00000023882.16_2	chr17	+	2325	5	FSM	ENSMUSG00000023882.16	ENSMUST00000165230.8	2832	5	18	489	12	-3	multi-exon	FALSE	canonical	2	4	junction_1	11.7340317027013	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACCGTTTTGTTTTC	NA	False	NA	NA	False	AATAAA	-17	NA	21643506	21655413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21643824_21647593_21647634_21647998_21648091_21650456_21650584_21653664
ENSMUSG00000023882.16_3	chr17	+	2040	4	FSM	ENSMUSG00000023882.16	ENSMUST00000167749.2	822	4	-12	-1206	-12	-3	multi-exon	FALSE	canonical	3	11	junction_1	10.1980390271856	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACCGTTTTGTTTTC	NA	False	NA	NA	False	AATAAA	-17	NA	21643507	21655413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21643580_21647998_21648091_21650456_21650584_21653664
ENSMUSG00000023882.16_7	chr17	+	2284	4	FSM	ENSMUSG00000023882.16	ENSMUST00000007884.15	2300	4	13	3	-12	-3	multi-exon	FALSE	canonical	2	3	junction_1	13.8884444373331	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACCGTTTTGTTTTC	NA	False	NA	NA	False	AATAAA	-17	NA	21643507	21655413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21643824_21647998_21648091_21650456_21650584_21653664
ENSMUSG00000023883.14_0	chr17	-	1676	12	NNC	ENSMUSG00000023883.14	novel	1663	12	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	3	223	junction_9	206.573981704752	159	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGATGACCTTAAACATCA	NA	False	NA	-19	True	AATAAA	-16	NA	15181554	15165270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_15165447_15166460_15166650_15166916_15167026_15170821_15170978_15172881_15173036_15174276_15174387_15175053_15175204_15175294_15175429_15176245_15176324_15176995_15177127_15179680_15179788_15181372
ENSMUSG00000023883.14_1	chr17	-	1684	12	FSM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	-22	1	-22	-1	multi-exon	FALSE	canonical	3	756	junction_1	72.874056420468	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACGATGACCTTAAACATC	NA	False	NA	-20	True	AATAAA	-15	NA	15181557	15165271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_15165447_15166460_15166650_15166916_15167026_15170821_15170978_15172881_15173036_15174276_15174387_15175053_15175204_15175294_15175429_15176245_15176330_15176995_15177127_15179680_15179788_15181372
ENSMUSG00000023883.14_30	chr17	-	4025	9	ISM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	-14	2729	-14	0	5prime_fragment	FALSE	canonical	3	797	junction_6	66.6966078597705	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCTCTGTCATCTTTTG	NA	False	NA	-2	True	AATAAA	-20	NA	15181549	15167999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_15170978_15172881_15173036_15174276_15174387_15175053_15175204_15175294_15175429_15176245_15176330_15176995_15177127_15179680_15179788_15181372
ENSMUSG00000023885.10_0	chr17	-	5750	22	FSM	ENSMUSG00000023885.10	ENSMUST00000170872.3	5895	22	145	0	145	0	multi-exon	FALSE	canonical	0	0	junction_8	0.843811673650921	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGAATCTCTCTCCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	14914352	14885761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_14887783_14888986_14889127_14890233_14890332_14890855_14891128_14891534_14891763_14893405_14893641_14894307_14894427_14896468_14896629_14897247_14897356_14898947_14899167_14899943_14900097_14900172_14900301_14900554_14900729_14901500_14901678_14901926_14902098_14903550_14903648_14904333_14904475_14906007_14906205_14908067_14908153_14909988_14910546_14911624_14911774_14914231
ENSMUSG00000023892.9_1	chr17	+	2562	5	FSM	ENSMUSG00000023892.9	ENSMUST00000039577.8	2574	5	12	0	12	0	multi-exon	FALSE	canonical	3	80	junction_1	22.3271135617661	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTCTCTCTCTCTGT	NA	False	NA	2	True	AATAAA	-18	NA	21670647	21685849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21670684_21672698_21672790_21676558_21676651_21681922_21682050_21683633
ENSMUSG00000023892.9_10	chr17	+	2526	4	ISM	ENSMUSG00000023892.9	ENSMUST00000039577.8	2574	5	2061	2	2061	-2	3prime_fragment	FALSE	canonical	3	124	junction_2	4.78423336480244	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAAGCTTCTCTCTCTCT	NA	False	NA	0	True	AATAAA	-16	NA	21672696	21685847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_21672790_21676558_21676651_21681922_21682050_21683633
ENSMUSG00000023892.9_14	chr17	+	1992	1	ISM	ENSMUSG00000023892.9	ENSMUST00000039577.8	2574	5	13220	2	13220	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAAGCTTCTCTCTCTCT	3869	False	NA	0	True	AATAAA	-16	NA	21683855	21685847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_21683900_21685800
ENSMUSG00000023892.9_3	chr17	+	2551	5	NNC	ENSMUSG00000023892.9	novel	2574	5	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	49.3931928508373	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAAGCTTCTCTCTCTCT	NA	False	NA	0	True	AATAAA	-16	NA	21670642	21685847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_21670670_21672698_21672790_21676558_21676651_21681922_21682050_21683633
ENSMUSG00000023902.19_1	chr17	+	2688	6	FSM	ENSMUSG00000023902.19	ENSMUST00000095595.9	2698	6	10	0	4	0	multi-exon	FALSE	canonical	3	153	junction_1	55.9335319821661	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	889	False	NA	28	True	AGTAAA	-12	NA	23819839	23829986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240
ENSMUSG00000023902.19_2	chr17	+	4046	4	NIC	ENSMUSG00000023902.19	novel	2698	6	NA	NA	2	0	intron_retention	FALSE	canonical	3	153	junction_1	60.5768566001535	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	881	False	NA	28	True	AGTAAA	-12	NA	23819831	23829986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_23819934_23824478_23826619_23827081_23827140_23828240
ENSMUSG00000023902.19_21	chr17	+	2574	5	ISM	ENSMUSG00000023902.19	ENSMUST00000095595.9	2698	6	4669	0	10	0	3prime_fragment	FALSE	canonical	3	169	junction_1	52.3473972609909	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	26	False	NA	28	True	AGTAAA	-12	NA	23824498	23829986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240
ENSMUSG00000023902.19_22	chr17	+	3447	3	ISM	ENSMUSG00000023902.19	ENSMUST00000118369.2	1006	4	488	-1314	487	0	3prime_fragment	FALSE	canonical	3	281	junction_2	0.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	503	False	NA	28	True	AGTAAA	-12	NA	23824975	23829986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_23826619_23827081_23827140_23828240
ENSMUSG00000023902.19_27	chr17	+	544	1	ISM	ENSMUSG00000023902.19	ENSMUST00000095595.9	2698	6	9613	0	2979	0	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	187	False	NA	28	True	AGTAAA	-12	NA	23829442	23829986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_23829400_23830000
ENSMUSG00000023902.19_3	chr17	+	2593	7	FSM	ENSMUSG00000023902.19	ENSMUST00000120967.8	2609	7	9	7	3	0	multi-exon	FALSE	canonical	3	46	junction_6	80.8484521943508	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	888	False	NA	28	True	AGTAAA	-12	NA	23819838	23829986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240_23828441_23828536
ENSMUSG00000023902.19_7	chr17	+	2418	5	NIC	ENSMUSG00000023902.19	novel	2698	6	NA	NA	9	0	intron_retention	FALSE	canonical	3	18	junction_2	109.005733794145	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	894	False	NA	28	True	AGTAAA	-12	NA	23819844	23829986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_23819934_23824478_23824939_23826553_23826619_23827081_23827140_23828240
ENSMUSG00000023904.11_0	chr17	+	666	4	FSM	ENSMUSG00000023904.11	ENSMUST00000179928.2	597	4	-18	-51	1	-2	multi-exon	FALSE	canonical	2	24	junction_1	165.748805928328	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTTCTCAGCAGCCTTT	NA	False	NA	9	True	AATAAA	-17	NA	23892582	23894199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_23892678_23892942_23893043_23893520_23893650_23893857
ENSMUSG00000023904.11_1	chr17	+	851	4	NNC	ENSMUSG00000023904.11	novel	597	4	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	146.645453011298	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGATTTCTCAGCAGCCT	NA	False	NA	7	True	AATAAA	-15	NA	23892582	23894197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_23892865_23892942_23893043_23893520_23893650_23893857
ENSMUSG00000023904.11_2	chr17	+	577	3	ISM	ENSMUSG00000023904.11	ENSMUST00000179928.2	597	4	334	-49	334	-4	3prime_fragment	FALSE	canonical	3	343	junction_1	29	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGATTTCTCAGCAGCCT	NA	False	NA	7	True	AATAAA	-15	NA	23892934	23894197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_23893043_23893520_23893650_23893857
ENSMUSG00000023905.16_0	chr17	-	981	4	FSM	ENSMUSG00000023905.16	ENSMUST00000024698.10	984	4	0	3	0	-3	multi-exon	FALSE	canonical	3	66	junction_1	6.34209919681348	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATATGGCCTGATCCCT	NA	False	NA	-4	True	AATAAA	-15	NA	23896442	23894421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896300
ENSMUSG00000023905.16_2	chr17	-	780	1	NIC	ENSMUSG00000023905.16	novel	984	4	NA	NA	327	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATGGCCTGATCCCTA	NA	False	NA	-3	True	AATAAA	-16	NA	23895200	23894420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_23894400_23895200
ENSMUSG00000023906.4_0	chr17	+	1495	3	FSM	ENSMUSG00000023906.4	ENSMUST00000024699.4	1622	3	122	5	-1	-1	multi-exon	FALSE	canonical	2	3	junction_1	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAATGTGTCTGATGTCTC	NA	False	NA	4	True	AATAAA	-18	NA	23898344	23901415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_23898382_23898731_23898796_23900021
ENSMUSG00000023906.4_2	chr17	+	1517	2	FSM	ENSMUSG00000023906.4	ENSMUST00000233364.2	1078	2	40	-479	40	-1	multi-exon	FALSE	canonical	3	11	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAATGTGTCTGATGTCTC	NA	False	NA	4	True	AATAAA	-18	NA	23898672	23901415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_23898796_23900021
ENSMUSG00000023906.4_3	chr17	+	839	1	ISM	ENSMUSG00000023906.4	ENSMUST00000024699.4	1622	3	2351	8	1941	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTACAATGTGTCTGATGT	1854	False	NA	1	True	AATAAA	-15	NA	23900573	23901412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_23900600_23901400
ENSMUSG00000023908.9_0	chr17	+	1926	8	FSM	ENSMUSG00000023908.9	ENSMUST00000024701.9	2040	8	113	1	-20	-1	multi-exon	FALSE	canonical	3	384	junction_2	52.6761379583211	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATAGCTCTTCTTGTCCC	3051	False	NA	28	True	AATAAA	-42	NA	23945422	23955703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
ENSMUSG00000023908.9_1	chr17	+	3708	5	NIC	ENSMUSG00000023908.9	novel	2902	7	NA	NA	-25	-1	intron_retention	FALSE	canonical	3	451	junction_4	39.6925685739787	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTTCTTGTCCCTTT	3046	False	NA	31	True	AATAAA	-45	NA	23945417	23955706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_23945616_23951310_23954347_23954536_23954695_23955297_23955376_23955468
ENSMUSG00000023908.9_4	chr17	+	2911	7	FSM	ENSMUSG00000023908.9	ENSMUST00000233954.2	2902	7	-7	-2	-7	-1	multi-exon	FALSE	canonical	3	419	junction_2	45.7484061653154	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATAGCTCTTCTTGTCCC	3064	False	NA	28	True	AATAAA	-42	NA	23945435	23955703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_23945616_23951310_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
ENSMUSG00000023908.9_6	chr17	+	1513	8	NNC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_3	138.628412436607	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATAGCTCTTCTTGTCCC	3063	False	NA	28	True	AATAAA	-42	NA	23945434	23955703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_23945616_23951310_23951799_23952796_23952890_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
ENSMUSG00000023908.9_7	chr17	+	2711	6	NIC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	-26	-1	intron_retention	TRUE	canonical	3	384	junction_2	57.1615255219803	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTTCTTGTCCCTTT	3045	False	NA	31	True	AATAAA	-45	NA	23945416	23955706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_23945616_23951310_23951799_23952796_23954347_23954536_23954695_23955297_23955376_23955468
ENSMUSG00000023909.5_0	chr17	-	2508	3	FSM	ENSMUSG00000023909.5	ENSMUST00000024702.5	2575	3	47	20	47	-20	multi-exon	FALSE	canonical	3	32	junction_1	3.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGGCAGCTGACAAGTTC	NA	False	NA	NA	False	AATAAA	-1	NA	23959325	23955179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23956974_23957113_23957336_23958833
ENSMUSG00000023909.5_2	chr17	-	1531	1	ISM	ENSMUSG00000023909.5	ENSMUST00000024702.5	2575	3	2674	8	2674	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTTCTCCCGCCTGACC	NA	False	NA	NA	False	AATAAA	-13	NA	23956698	23955167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_23955200_23956700
ENSMUSG00000023911.13_0	chr17	-	684	3	FSM	ENSMUSG00000023911.13	ENSMUST00000024704.10	694	3	9	1	9	-1	multi-exon	FALSE	canonical	3	11	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTAGTTTTTGTTGTTG	NA	False	NA	-1	True	AATAAA	-25	NA	24005046	23995890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23996074_23998601_23999031_24004974
ENSMUSG00000023912.11_0	chr17	-	3921	1	NIC	ENSMUSG00000023912.11	novel	2895	9	NA	NA	21310	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAAAAAAATGGCTCAGC	NA	False	NA	NA	False	AGTAAA	-37	NA	43956713	43952792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_43952800_43956700
ENSMUSG00000023915.6_0	chr17	+	3623	6	FSM	ENSMUSG00000023915.6	ENSMUST00000024708.6	3627	6	3	1	3	-1	multi-exon	FALSE	canonical	3	155	junction_1	28.3450171987953	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTGTGGTTTTGGTATA	NA	False	NA	20	True	AATAAA	-16	NA	43327448	43400079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_43327984_43348485_43349138_43350585_43351081_43375858_43376125_43396226_43396456_43398633
ENSMUSG00000023915.6_10	chr17	+	2229	4	ISM	ENSMUSG00000023915.6	ENSMUST00000024708.6	3627	6	23347	1	23334	-1	3prime_fragment	FALSE	canonical	3	212	junction_1	11.8977121983832	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTGTGGTTTTGGTATA	NA	False	NA	20	True	AATAAA	-16	NA	43350792	43400079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_43351081_43375858_43376125_43396226_43396456_43398633
ENSMUSG00000023915.6_3	chr17	+	3306	6	NNC	ENSMUSG00000023915.6	novel	3627	6	NA	NA	19769	-1	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_1	56.2899635814414	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTGTGGTTTTGGTATA	NA	False	NA	20	True	AATAAA	-16	NA	43347227	43400079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_43347446_43348485_43349138_43350585_43351081_43375858_43376125_43396226_43396456_43398633
ENSMUSG00000023919.9_0	chr17	-	1408	9	FSM	ENSMUSG00000023919.10	ENSMUST00000087114.5	1942	9	520	14	520	-14	multi-exon	FALSE	canonical	3	128	junction_2	14.1283181943216	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGTAATAGTTTCTGAT	NA	False	NA	-15	True	AATAAA	-13	NA	41245418	41233955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
ENSMUSG00000023921.10_0	chr17	+	3308	13	FSM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	31	335	31	-335	multi-exon	FALSE	canonical	3	278	junction_5	30.8112533554436	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAACTCTTGTAGTGTG	NA	False	NA	9	True	AATAAA	-10	NA	41245606	41272544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
ENSMUSG00000023921.10_15	chr17	+	3086	12	ISM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	2511	341	2511	-341	3prime_fragment	FALSE	canonical	3	278	junction_4	32.142760068068	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTCTGAAGAACTCTTGT	NA	False	NA	3	True	AATAAA	-4	NA	41248086	41272538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
ENSMUSG00000023923.11_0	chr17	-	2604	1	ISM	ENSMUSG00000023923.11	ENSMUST00000024717.10	5435	22	443422	19	248880	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTACTGAGAACTGGGAT	NA	False	NA	NA	False	AATAAA	-1	NA	51042774	51040170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_51040200_51042800
ENSMUSG00000023923.11_1	chr17	-	4762	22	FSM	ENSMUSG00000023923.11	ENSMUST00000024717.10	5435	22	-123	796	-2	84	multi-exon	FALSE	canonical	2	15	junction_3	5.14990698460791	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTCGTCTGCTTTTTTAT	NA	False	NA	NA	False	AATACA	-33	NA	51486319	51040947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_51043273_51048503_51048648_51049084_51049165_51063654_51063755_51089288_51089453_51106894_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
ENSMUSG00000023923.11_13	chr17	-	3355	8	ISM	ENSMUSG00000023923.11	ENSMUST00000224977.2	5578	22	306810	697	132058	175	3prime_fragment	FALSE	canonical	3	15	junction_3	5.22943006220661	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGGTCGGTTCAGTGC	NA	False	NA	NA	False	AGTAAA	-16	NA	51159596	51040856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_51043273_51048503_51048648_51049084_51049165_51063654_51063755_51089288_51089453_51106894_51107224_51120783_51120870_51159560
ENSMUSG00000023923.11_16	chr17	-	5511	18	NNC	ENSMUSG00000023923.11	novel	4764	23	NA	NA	11	2727	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	7.23505499365732	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATCATGTTTGGCTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	51486306	51102027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_51105603_51106894_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
ENSMUSG00000023923.11_2	chr17	-	2638	3	ISM	ENSMUSG00000023923.11	ENSMUST00000224977.2	5578	22	417139	802	242387	70	3prime_fragment	FALSE	canonical	3	20	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGATTAAGCCCTACTGTC	NA	False	NA	NA	False	AATACA	-19	NA	51049267	51040961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_51043273_51048503_51048648_51049084
ENSMUSG00000023923.11_34	chr17	-	3980	17	FSM	ENSMUSG00000023923.11	ENSMUST00000225252.2	4150	17	159	11	-25	-11	multi-exon	FALSE	canonical	2	18	junction_7	4.02919036532155	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGCCTCCAACTCTGGC	NA	False	NA	NA	False	AATAAA	-2	NA	51486221	51104765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
ENSMUSG00000023923.11_5	chr17	-	5581	23	FSM	ENSMUSG00000023923.11	ENSMUST00000224528.2	4764	23	61	-878	-7	-2	multi-exon	TRUE	canonical	0	0	junction_5	8.62834556027041	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCACATCCACTTCTTCCA	NA	False	NA	NA	False	AATAAA	-18	NA	51486278	51040153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_51043273_51048503_51048648_51049084_51049165_51063654_51063755_51089288_51089453_51102953_51103020_51106894_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
ENSMUSG00000023923.11_6	chr17	-	3561	9	ISM	ENSMUSG00000023923.11	ENSMUST00000224977.2	5578	22	284678	697	109926	175	3prime_fragment	FALSE	canonical	3	15	junction_3	5.77575752607396	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGGTCGGTTCAGTGC	NA	False	NA	NA	False	AGTAAA	-16	NA	51181728	51040856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_51043273_51048503_51048648_51049084_51049165_51063654_51063755_51089288_51089453_51106894_51107224_51120783_51120870_51159560_51159668_51181593
ENSMUSG00000023923.11_8	chr17	-	3976	15	ISM	ENSMUSG00000023923.11	ENSMUST00000224977.2	5578	22	195667	795	20915	77	3prime_fragment	FALSE	canonical	2	15	junction_3	5.74278606921194	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCTACTGTCGTCTGCT	NA	False	NA	NA	False	AATACA	-26	NA	51270739	51040954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_51043273_51048503_51048648_51049084_51049165_51063654_51063755_51089288_51089453_51106894_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720
ENSMUSG00000023927.16_10	chr17	-	2984	10	FSM	ENSMUSG00000023927.16	ENSMUST00000176669.8	4407	10	1777	-354	-10	-204	multi-exon	FALSE	canonical	3	34	junction_1	10.077477638554	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAAACAAAGTGTCTTAA	NA	False	NA	NA	False	NA	NA	NA	52116170	52046125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_52047442_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070
ENSMUSG00000023927.16_11	chr17	-	4776	11	NIC	ENSMUSG00000023927.16	novel	5993	11	NA	NA	-648	-115	combination_of_known_splicesites	FALSE	canonical	3	8	junction_1	18.0055546984812	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTAGAAGCTTCGGTCTC	NA	False	NA	NA	False	TATAAA	-25	NA	52120356	52046036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_52047439_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070_52116316_52118795
ENSMUSG00000023927.16_13	chr17	-	3743	11	FSM	ENSMUSG00000023927.16	ENSMUST00000144331.8	6243	11	26	2474	26	233	multi-exon	FALSE	canonical	3	5	junction_10	18.7245827723877	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACATGGCAGGGTTTGTC	NA	False	NA	NA	False	ATTAAA	-15	NA	52139674	52045688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_52047442_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070_52116316_52139497
ENSMUSG00000023927.16_2	chr17	-	3812	11	NIC	ENSMUSG00000023927.16	novel	6243	11	NA	NA	-46	233	combination_of_known_splicesites	FALSE	canonical	3	5	junction_10	22.6232181618796	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACATGGCAGGGTTTGTC	NA	False	NA	NA	False	ATTAAA	-15	NA	52139746	52045688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_52047439_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070_52116316_52139497
ENSMUSG00000023927.16_3	chr17	-	5100	11	FSM	ENSMUSG00000023927.16	ENSMUST00000152830.9	5993	11	1698	-805	-626	228	multi-exon	FALSE	canonical	3	34	junction_1	11.1821285987955	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTATGACATGGCAGGGT	NA	False	NA	NA	False	ATTAAA	-10	NA	52120334	52045693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_52047442_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070_52116316_52118795
ENSMUSG00000023927.16_4	chr17	-	5229	12	NIC	ENSMUSG00000023927.16	novel	3748	12	NA	NA	-654	233	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	21.6577434475448	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACATGGCAGGGTTTGTC	NA	False	NA	NA	False	ATTAAA	-15	NA	52120362	52045688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_52047442_52049074_52049171_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070_52116316_52118795
ENSMUSG00000023927.16_7	chr17	-	3043	8	ISM	ENSMUSG00000023927.16	ENSMUST00000176669.8	4407	10	6580	-791	4793	233	3prime_fragment	FALSE	canonical	3	34	junction_1	11.2884264372219	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACATGGCAGGGTTTGTC	NA	False	NA	NA	False	ATTAAA	-15	NA	52111367	52045688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_52047442_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341
ENSMUSG00000023931.6_12	chr17	-	1800	2	ISM	ENSMUSG00000023931.6	ENSMUST00000233544.2	3656	9	61824	28	61824	-28	3prime_fragment	FALSE	canonical	3	29	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATACAAAATTAAAAACA	NA	False	NA	NA	False	AAAAAG	-41	NA	53708510	53706203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_53707956_53708462
ENSMUSG00000023931.6_13	chr17	-	3950	12	ISM	ENSMUSG00000023931.6	ENSMUST00000024725.5	2661	13	50	287	35	-28	5prime_fragment	FALSE	canonical	2	16	junction_3	7.09440473277333	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATACAAAATTAAAAACA	NA	False	NA	NA	False	AAAAAG	-41	NA	53770299	53706203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53769458
ENSMUSG00000023931.6_19	chr17	-	2991	10	ISM	ENSMUSG00000023931.6	ENSMUST00000024725.5	2661	13	11682	287	11667	-28	internal_fragment	FALSE	canonical	2	16	junction_3	6.09391520035648	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATACAAAATTAAAAACA	NA	False	NA	NA	False	AAAAAG	-41	NA	53758667	53706203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578
ENSMUSG00000023931.6_2	chr17	-	2186	13	FSM	ENSMUSG00000023931.6	ENSMUST00000024725.5	2661	13	471	4	456	-4	multi-exon	TRUE	canonical	2	7	junction_1	9.14998482087387	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAAAATGTCCTGGTTTT	NA	False	NA	-8	True	ATTAAA	-10	NA	53769878	53705920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_53706148_53707773_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53769458
ENSMUSG00000023931.6_20	chr17	-	2021	11	ISM	ENSMUSG00000023931.6	ENSMUST00000024725.5	2661	13	495	2278	480	-2019	5prime_fragment	FALSE	canonical	2	16	junction_2	7.44043009509531	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTTGGATGTCTGTGTT	NA	False	NA	NA	False	AATAAA	-44	NA	53769854	53708194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53769458
ENSMUSG00000023932.10_4	chr17	-	2832	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	187	8	-9	-8	multi-exon	TRUE	canonical	3	561	junction_9	75.0022221893014	1251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTGAGTGTAGCCTTT	2371	False	NA	-10	True	AATAAA	-12	NA	45744476	45702817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
ENSMUSG00000023935.11_10	chr17	-	1099	8	FSM	ENSMUSG00000023935.11	ENSMUST00000024731.9	1160	8	87	-26	13	26	multi-exon	TRUE	canonical	2	8	junction_7	6.20730313782869	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCCGTGCTTTTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	45785777	45759836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_45760118_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
ENSMUSG00000023938.9_1	chr17	+	3329	22	FSM	ENSMUSG00000023938.9	ENSMUST00000024733.9	3349	22	1	19	1	-19	multi-exon	TRUE	canonical	3	146	junction_8	22.4045468336421	380	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACAATAATTTGGTGTAT	NA	False	NA	0	True	AATACA	-14	NA	45817767	45831750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
ENSMUSG00000023939.8_0	chr17	+	584	3	FSM	ENSMUSG00000023939.8	ENSMUST00000024734.8	645	3	54	7	19	-7	multi-exon	FALSE	canonical	3	814	junction_1	143	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTATACTGTCTGAGCT	NA	False	NA	30	True	AATAAA	-19	NA	45997301	46009414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_45997354_46006407_46006499_46008973
ENSMUSG00000023939.8_4	chr17	+	675	2	FSM	ENSMUSG00000023939.8	ENSMUST00000148537.2	510	2	-72	-93	-72	-2	multi-exon	FALSE	canonical	3	1100	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTCTGAGCTGTGAT	NA	False	NA	35	True	AATAAA	-24	NA	46006269	46009419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46006499_46008973
ENSMUSG00000023940.15_1	chr17	-	2309	9	FSM	ENSMUSG00000023940.15	ENSMUST00000024736.14	3628	9	49	1270	2	-1270	multi-exon	FALSE	canonical	3	305	junction_7	54.3666660279992	684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTATGTGTGTATGTA	NA	False	NA	-5	True	AATAAA	-22	NA	53996312	53983083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238
ENSMUSG00000023940.15_2	chr17	-	2312	9	NIC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	22	-1270	combination_of_known_junctions	FALSE	canonical	3	16	junction_8	149.294538999255	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTATGTGTGTATGTA	NA	False	NA	-5	True	AATAAA	-22	NA	53996284	53983083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996207
ENSMUSG00000023940.15_4	chr17	-	3437	8	NIC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	2	-11	combination_of_known_splicesites	FALSE	canonical	3	13	junction_7	157.427275078925	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGACATAGTCAGTTGC	NA	False	NA	-11	True	AATAAA	-19	NA	53996312	53981824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53996238
ENSMUSG00000023940.15_5	chr17	-	2501	3	ISM	ENSMUSG00000023940.15	ENSMUST00000024736.14	3628	9	10026	13	9971	-13	3prime_fragment	FALSE	canonical	3	426	junction_1	28.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGAGACATAGTCAGTT	4317	False	NA	-13	True	AATAAA	-17	NA	53986335	53981826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_53983740_53983934_53984125_53985937
ENSMUSG00000023942.16_16	chr17	-	1962	13	FSM	ENSMUSG00000023942.16	ENSMUST00000051574.13	1996	13	34	0	3	0	multi-exon	FALSE	canonical	3	154	junction_12	699.864927444337	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906464	45896128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ENSMUSG00000023942.16_2	chr17	-	2045	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	11	-4	combination_of_known_junctions	FALSE	canonical	3	1453	junction_5	311.5369990469	1540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCATAGCTCTGTGCATCC	NA	False	NA	-8	True	AATAAA	-11	NA	45906456	45896132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ENSMUSG00000023942.16_3	chr17	-	2051	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	11	-4	combination_of_known_junctions	FALSE	canonical	3	1063	junction_5	395.007197897117	1296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCATAGCTCTGTGCATCC	NA	False	NA	-8	True	AATAAA	-11	NA	45906456	45896132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ENSMUSG00000023942.16_8	chr17	-	1948	13	FSM	ENSMUSG00000023942.16	ENSMUST00000064889.13	1988	13	40	0	11	0	multi-exon	FALSE	canonical	3	154	junction_12	659.372555287727	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906456	45896128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ENSMUSG00000023944.15_0	chr17	-	2510	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	5	5	5	-5	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	17645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	-29	True	AATAAA	-14	NA	45884192	45878705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
ENSMUSG00000023944.15_1	chr17	-	2152	9	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	1763	5	74	-5	3prime_fragment	FALSE	canonical	3	9221	junction_4	999.412296052035	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	-29	True	AATAAA	-14	NA	45882434	45878705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338
ENSMUSG00000023944.15_4	chr17	-	1674	6	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	2793	5	-742	-5	3prime_fragment	TRUE	canonical	3	9221	junction_4	1117.92046228701	836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	-29	True	AATAAA	-14	NA	45881404	45878705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183
ENSMUSG00000023947.9_0	chr17	+	2429	6	FSM	ENSMUSG00000023947.9	ENSMUST00000024742.9	2435	6	-1	7	-1	-4	multi-exon	FALSE	canonical	3	12	junction_2	2.44948974278318	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAATATGTGGTTATAC	NA	False	NA	NA	False	ATTAAA	-10	NA	45866627	45874088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_45867241_45869420_45869524_45870133_45870357_45871049_45871139_45871333_45871574_45872927
ENSMUSG00000023949.8_0	chr17	+	2615	3	ISM	ENSMUSG00000023949.8	ENSMUST00000233588.2	2885	4	1631	11	1631	-10	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACCAAGAAAAGAAACCAAAG	NA	False	NA	NA	False	NA	NA	NA	45845609	45853595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_45846238_45850565_45851016_45852058
ENSMUSG00000023951.19_0	chr17	-	4218	6	NIC	ENSMUSG00000023951.19	novel	3451	7	NA	NA	-4	-63	intron_retention	FALSE	canonical	3	338	junction_2	76.7984374841051	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACAGATATATCTTAAA	NA	False	NA	-64	True	TTTAAA	-12	NA	46343299	46327981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_46329806_46331916_46332049_46334990_46335021_46335369_46336470_46339276_46339326_46342216
ENSMUSG00000023951.19_1	chr17	-	3446	7	FSM	ENSMUSG00000023951.19	ENSMUST00000071648.12	3451	7	-4	9	-4	-9	multi-exon	FALSE	canonical	3	338	junction_2	72.4463402955748	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCAAAGCTCTCCCTGG	NA	False	NA	-10	True	ATTAAA	-13	NA	46343299	46327927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46329806_46331916_46332049_46334990_46335021_46335369_46335447_46336272_46336470_46339276_46339326_46342216
ENSMUSG00000023951.19_10	chr17	-	5233	7	NIC	ENSMUSG00000023951.19	novel	1973	8	NA	NA	-4	-10	intron_retention	FALSE	canonical	3	122	junction_2	146.247981942392	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTCAAAGCTCTCCCTG	NA	False	NA	-11	True	ATTAAA	-12	NA	46343299	46327928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_46329806_46331916_46332049_46333202_46335021_46335369_46335447_46336272_46336470_46339276_46339326_46342216
ENSMUSG00000023951.19_2	chr17	-	3315	6	FSM	ENSMUSG00000023951.19	ENSMUST00000024747.14	2765	6	-558	8	-4	-8	multi-exon	FALSE	canonical	3	41	junction_1	191.124671353543	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAAAGCTCTCCCTGGT	NA	False	NA	-9	True	ATTAAA	-14	NA	46343299	46327926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46329806_46334990_46335021_46335369_46335447_46336272_46336470_46339276_46339326_46342216
ENSMUSG00000023951.19_3	chr17	-	3519	8	FSM	ENSMUSG00000023951.19	ENSMUST00000142351.9	1973	8	-4	-1542	-4	-8	multi-exon	FALSE	canonical	3	122	junction_2	174.18943476478	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAAAGCTCTCCCTGGT	NA	False	NA	-9	True	ATTAAA	-14	NA	46343299	46327926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46329806_46331916_46332049_46333202_46333275_46334990_46335021_46335369_46335447_46336272_46336470_46339276_46339326_46342216
ENSMUSG00000023951.19_4	chr17	-	3001	2	FSM	ENSMUSG00000023951.19	ENSMUST00000143985.2	550	2	-740	-1711	-740	-8	multi-exon	FALSE	canonical	3	464	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAAAGCTCTCCCTGGT	NA	False	NA	-9	True	ATTAAA	-14	NA	46333038	46327926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46329806_46331916
ENSMUSG00000023951.19_5	chr17	-	1270	1	ISM	ENSMUSG00000023951.19	ENSMUST00000024747.14	2765	6	13545	8	3102	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAAAGCTCTCCCTGGT	NA	False	NA	-9	True	ATTAAA	-14	NA	46329196	46327926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_46327900_46329200
ENSMUSG00000023952.14_1	chr17	+	2879	12	FSM	ENSMUSG00000023952.14	ENSMUST00000024748.14	2966	12	84	3	5	-1	multi-exon	FALSE	canonical	3	39	junction_1	11.1762735698931	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTGCTTATTCTTAAG	NA	False	NA	2	True	AATAAA	-15	NA	46472041	46480293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46472253_46474408_46474436_46475119_46475305_46475650_46475760_46475911_46476110_46476380_46476556_46476703_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071
ENSMUSG00000023952.14_2	chr17	+	3136	11	ISM	ENSMUSG00000023952.14	ENSMUST00000172170.8	2587	13	47	-30	2	-2	intron_retention	TRUE	canonical	3	39	junction_1	11.6464586892325	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTCTGCTTATTCTTAA	NA	False	NA	1	True	AATAAA	-14	NA	46472038	46480292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46472253_46474408_46474436_46475119_46475305_46475650_46475760_46475911_46476110_46476380_46476556_46476703_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651
ENSMUSG00000023952.14_27	chr17	+	2797	12	NIC	ENSMUSG00000023952.14	novel	826	5	NA	NA	51	-2	intron_retention	FALSE	canonical	2	6	junction_1	17.4616462828993	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTCTGCTTATTCTTAA	NA	False	NA	1	True	AATAAA	-14	NA	46474009	46480292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_46474140_46474408_46474436_46475119_46475305_46475650_46475760_46475911_46476110_46476380_46476556_46476703_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071
ENSMUSG00000023952.14_35	chr17	+	1906	6	ISM	ENSMUSG00000023952.14	ENSMUST00000172170.8	2587	13	4775	-26	63	-6	intron_retention	FALSE	canonical	3	41	junction_1	12.8778880256042	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGACACTCTGCTTATTC	NA	False	NA	-3	True	AATAAA	-10	NA	46476766	46480288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071
ENSMUSG00000023953.10_0	chr17	-	3228	11	FSM	ENSMUSG00000023953.10	ENSMUST00000024749.9	3238	11	9	1	9	-1	multi-exon	TRUE	canonical	3	10	junction_7	5.44426303552648	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGCTTGCATACTTT	7132	False	NA	-13	True	AATAAA	-14	NA	46513562	46482281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46484023_46486076_46486247_46492391_46492458_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46505127_46505343_46509559_46509695_46510317_46510461_46513322
ENSMUSG00000023953.10_1	chr17	-	2977	10	FSM	ENSMUSG00000023953.10	ENSMUST00000233438.2	2130	10	22	-869	22	-1	multi-exon	FALSE	canonical	2	4	junction_7	6.99382443638054	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGCTTGCATACTTT	7168	False	NA	-13	True	AATAAA	-14	NA	46513526	46482281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46484023_46486076_46486247_46492391_46492458_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46509559_46509695_46510317_46510461_46513322
ENSMUSG00000023953.10_4	chr17	-	1977	3	ISM	ENSMUSG00000023953.10	ENSMUST00000024749.9	3238	11	21114	1	13958	-1	3prime_fragment	FALSE	canonical	3	18	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGCTTGCATACTTT	NA	False	NA	-13	True	AATAAA	-14	NA	46492457	46482281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_46484023_46486076_46486247_46492391
ENSMUSG00000023960.14_0	chr17	+	3333	3	ISM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	24	1461	-10	-1461	5prime_fragment	FALSE	canonical	3	19	junction_2	5.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGATAACCTTTGCACTT	NA	False	NA	NA	False	AATAAA	-6	NA	44389759	44395989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_44389874_44391537_44392402_44393634
ENSMUSG00000023960.14_1	chr17	+	2490	4	FSM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	38	6	4	-6	multi-exon	FALSE	canonical	3	12	junction_3	7.40870359029762	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTTAAAAAAAATAGTGT	NA	False	NA	NA	False	ATTAAA	-12	NA	44389773	44397444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_44389874_44391537_44392402_44393634_44393812_44396095
ENSMUSG00000023960.14_4	chr17	+	1679	3	ISM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	2508	11	2474	-11	3prime_fragment	FALSE	canonical	3	12	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTGAAATTTAAAAAAAAT	NA	False	NA	NA	False	ATTAAA	-7	NA	44392243	44397439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_44392402_44393634_44393812_44396095
ENSMUSG00000023961.17_0	chr17	-	4515	4	FSM	ENSMUSG00000023961.17	ENSMUST00000024757.14	4560	4	37	8	-8	0	multi-exon	FALSE	canonical	3	12	junction_3	10.2740233382816	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATATCAGCCTTC	NA	False	NA	NA	False	AATAAA	-9	NA	44416663	44407206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_44410569_44412201_44412373_44412697_44413556_44416539
ENSMUSG00000023961.17_1	chr17	-	2222	1	ISM	ENSMUSG00000023961.17	ENSMUST00000024757.14	4560	4	7272	8	7227	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATATCAGCCTTC	NA	False	NA	NA	False	AATAAA	-9	NA	44409428	44407206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_44407200_44409400
ENSMUSG00000023961.17_2	chr17	-	4487	4	FSM	ENSMUSG00000023961.17	ENSMUST00000143137.2	4445	4	-42	0	3	0	multi-exon	FALSE	canonical	2	9	junction_3	11.5854314646552	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATATCAGCCTTC	NA	False	NA	NA	False	AATAAA	-9	NA	44416697	44407206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_44410569_44412201_44412373_44412697_44413556_44416601
ENSMUSG00000023961.17_7	chr17	-	3871	3	ISM	ENSMUSG00000023961.17	ENSMUST00000143137.2	4445	4	3616	4	3616	-4	3prime_fragment	FALSE	canonical	3	27	junction_1	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCCAAACAAATATATCAGC	NA	False	NA	NA	False	AATAAA	-5	NA	44413039	44407210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_44410569_44412201_44412373_44412697
ENSMUSG00000023963.11_0	chr17	+	2491	12	FSM	ENSMUSG00000023963.11	ENSMUST00000170988.2	3053	12	-24	586	-24	-10	multi-exon	FALSE	canonical	3	74	junction_8	14.3492448040404	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATAAATGCGCATCTG	NA	False	NA	-6	True	NA	NA	NA	43978291	44061736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_43978686_43987721_43987858_43991014_43991190_43993838_43993989_43996076_43996168_44002524_44002630_44012367_44012459_44036405_44036540_44041862_44041959_44042815_44042905_44057415_44057504_44060794
ENSMUSG00000023965.14_0	chr17	-	3227	9	FSM	ENSMUSG00000023965.14	ENSMUST00000024761.13	4925	9	-322	2020	-322	-534	multi-exon	FALSE	canonical	3	52	junction_1	4.68874983337776	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAACACTGTGTTCGCTTT	NA	False	NA	-12	True	AATAAA	-19	NA	63807334	63366466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_63367407_63387415_63387559_63532019_63532097_63663742_63663874_63691939_63692048_63778402_63778535_63794706_63794965_63797759_63797883_63806019
ENSMUSG00000023966.9_0	chr17	-	946	5	FSM	ENSMUSG00000023966.9	ENSMUST00000024762.3	966	5	20	0	20	0	multi-exon	FALSE	canonical	1	1	junction_4	1.22474487139159	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTGTCTTGATTGTTGT	NA	False	NA	NA	False	CATAAA	-21	NA	46455122	46440196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46440425_46445898_46446046_46447667_46447798_46452472_46452639_46454847
ENSMUSG00000023967.10_0	chr17	+	859	6	FSM	ENSMUSG00000023967.10	ENSMUST00000024763.10	884	6	23	2	13	-2	multi-exon	FALSE	canonical	3	1040	junction_5	46.4732180938656	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGTGTGGTCAGTGCTTAG	NA	False	NA	17	True	AATAAA	-17	NA	46421934	46439834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568_46436639_46439430
ENSMUSG00000023967.10_1	chr17	+	3651	5	FSM	ENSMUSG00000023967.10	ENSMUST00000123646.2	621	5	13	-3043	13	-2	multi-exon	FALSE	canonical	3	1063	junction_2	42.9905512874632	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGTGTGGTCAGTGCTTAG	NA	False	NA	17	True	AATAAA	-17	NA	46421934	46439834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568
ENSMUSG00000023971.10_0	chr17	-	2179	8	NNC	ENSMUSG00000023971.10	novel	1289	7	NA	NA	-17	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	153.326382569461	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTGCATCAGCCTGC	NA	False	NA	-3	True	NA	NA	NA	46985230	46977249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_46978168_46978366_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUSG00000023971.10_9	chr17	-	1257	7	FSM	ENSMUSG00000023971.10	ENSMUST00000024766.7	1195	7	-49	-13	-17	13	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGGCTGGTGAGATGGC	NA	False	NA	NA	False	NA	NA	NA	46985230	46978370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUSG00000023972.11_0	chr17	-	4194	20	FSM	ENSMUSG00000023972.11	ENSMUST00000044442.10	4235	20	38	3	38	-3	multi-exon	FALSE	canonical	3	399	junction_15	41.2008794247642	1159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCTGTTTGTTAGACCC	NA	False	NA	-23	True	AATAAA	-14	NA	46940392	46875399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46876422_46877028_46877208_46878850_46879003_46882528_46882610_46883447_46883681_46884345_46884502_46885197_46885402_46887189_46887318_46887417_46887569_46887686_46887837_46889975_46890096_46890218_46890355_46890492_46890627_46897126_46897394_46897639_46897789_46900937_46901089_46901186_46901378_46901684_46901788_46902440_46902729_46940193
ENSMUSG00000023973.14_1	chr17	-	1830	6	FSM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	19	59	0	-8	multi-exon	FALSE	canonical	3	416	junction_4	48.1730214954387	564	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTGTAATTTTGCTACT	NA	False	NA	-26	True	NA	NA	NA	47063121	47046689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346_47058471_47062898
ENSMUSG00000023977.16_0	chr17	-	5699	47	FSM	ENSMUSG00000023977.16	ENSMUST00000113335.4	5691	47	-1	-7	-1	1	multi-exon	FALSE	canonical	3	75	junction_37	17.7419541657098	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCCCAGTTTTATTTTT	NA	False	NA	-4	True	AATAAA	-17	NA	47321459	47241167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47241427_47243378_47243481_47245000_47245172_47246359_47246438_47249575_47249633_47250227_47250337_47251929_47252061_47253645_47253737_47254262_47254399_47255433_47255502_47255716_47255814_47255971_47256028_47256943_47257093_47259498_47259578_47262807_47262912_47264823_47264986_47265795_47265890_47266707_47266908_47267483_47267663_47268039_47268121_47268230_47268341_47270389_47270493_47272424_47272580_47274072_47274122_47274613_47274717_47275682_47275736_47277066_47277192_47277957_47278022_47278115_47278239_47279309_47279376_47280116_47280228_47281026_47281089_47283789_47283974_47284842_47284972_47286665_47286766_47286852_47287017_47291245_47291345_47292279_47292369_47293191_47293300_47294146_47294268_47296914_47296978_47297570_47297710_47299578_47299710_47301917_47302032_47303916_47303996_47311511_47311772_47321067
ENSMUSG00000023977.16_1	chr17	-	1323	1	ISM	ENSMUSG00000023977.16	ENSMUST00000113337.10	7633	47	80902	1	3457	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGAGTTTTGCCTCCATCT	NA	False	NA	-5	True	AATAAA	-16	NA	47240544	47239221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_47239200_47240500
ENSMUSG00000023977.16_14	chr17	-	5695	47	FSM	ENSMUSG00000023977.16	ENSMUST00000113337.10	7633	47	-8	1946	4	2	multi-exon	FALSE	canonical	3	27	junction_37	23.6319046780947	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCCAGTTTTATTTTTC	NA	False	NA	-3	True	AATAAA	-18	NA	47321454	47241166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47241427_47243378_47243481_47245000_47245172_47246359_47246438_47249575_47249633_47250227_47250337_47251929_47252061_47253645_47253737_47254262_47254399_47255433_47255502_47255716_47255814_47255971_47256028_47256943_47257093_47259498_47259578_47262807_47262912_47264823_47264986_47265795_47265890_47266707_47266908_47267483_47267663_47268039_47268121_47268230_47268341_47270389_47270493_47272424_47272580_47274072_47274122_47274613_47274717_47275682_47275736_47277066_47277192_47277957_47278022_47278115_47278239_47279309_47279376_47280116_47280228_47281026_47281089_47283789_47283974_47284842_47284972_47286665_47286766_47286852_47287017_47291414_47291514_47292279_47292369_47293191_47293300_47294146_47294268_47296914_47296978_47297570_47297710_47299578_47299710_47301917_47302032_47303916_47303996_47311511_47311772_47321067
ENSMUSG00000023979.15_0	chr17	+	1634	4	FSM	ENSMUSG00000023979.15	ENSMUST00000024774.14	1668	4	28	6	17	-6	multi-exon	FALSE	canonical	3	16	junction_3	4.64279609239471	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAACTTATTGTCCTGGA	1158	False	NA	NA	False	ATTAAA	-9	NA	47696345	47703886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47696622_47700034_47700185_47701905_47702027_47702799
ENSMUSG00000023979.15_1	chr17	+	2407	3	FSM	ENSMUSG00000023979.15	ENSMUST00000145462.2	1556	3	21	-872	21	-2	multi-exon	FALSE	canonical	3	24	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTATTGTCCTGGAGGTG	1162	False	NA	NA	False	ATTAAA	-13	NA	47696349	47703890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47696622_47700034_47700185_47701905
ENSMUSG00000023980.8_0	chr17	-	1263	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233174.2	1263	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	61.3926805449135	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATTTATTATTATA	NA	False	NA	NA	False	AATAAA	-19	NA	47813212	47794288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47794760_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUSG00000023980.8_10	chr17	-	2436	8	ISM	ENSMUSG00000023980.8	ENSMUST00000067103.4	2784	9	883	255	863	-23	3prime_fragment	FALSE	canonical	3	80	junction_1	54.5527267879434	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAACTTTGTAAATGA	NA	False	NA	-27	True	AATAAA	-8	NA	47812334	47799229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_47800822_47801067_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208
ENSMUSG00000023980.8_11	chr17	-	2401	8	NIC	ENSMUSG00000023980.8	novel	2793	8	NA	NA	0	-6	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	67.8948767265564	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCAGACATAGGGCCTC	NA	False	NA	-10	True	AATAAA	-25	NA	47813212	47799212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_47800822_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUSG00000023980.8_19	chr17	-	1304	7	FSM	ENSMUSG00000023980.8	ENSMUST00000233274.2	1692	7	2	386	0	-386	multi-exon	FALSE	canonical	3	187	junction_3	14.5535409971442	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTACTATTCTGGTAG	NA	False	NA	-10	True	AATAAA	-15	NA	47813212	47803974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUSG00000023980.8_2	chr17	-	2529	9	FSM	ENSMUSG00000023980.8	ENSMUST00000067103.4	2784	9	5	250	0	-18	multi-exon	FALSE	canonical	3	80	junction_1	52.1152568831815	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTTTGTAAATGACTCAG	NA	False	NA	-22	True	AATAAA	-13	NA	47813212	47799224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47800822_47801067_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUSG00000023980.8_3	chr17	-	1770	1	NIC	ENSMUSG00000023980.8	novel	2784	9	NA	NA	12201	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTTTGTAAATGACTC	NA	False	NA	-24	True	AATAAA	-11	NA	47800996	47799226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_47799200_47801000
ENSMUSG00000023980.8_7	chr17	-	2770	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233121.2	2793	8	0	23	0	-23	multi-exon	FALSE	canonical	3	89	junction_1	41.4984632122636	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAACTTTGTAAATGA	NA	False	NA	-27	True	AATAAA	-8	NA	47813212	47799229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUSG00000023982.9_0	chr17	-	510	3	ISM	ENSMUSG00000023982.9	ENSMUST00000059348.9	873	4	4881	3	4881	-3	3prime_fragment	FALSE	canonical	3	65	junction_1	4	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTCAGAGTCTCAGCTTT	6717	False	NA	-3	True	NA	NA	NA	47706628	47705485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_47705746_47706032_47706127_47706472
ENSMUSG00000023984.18_1	chr17	+	2601	8	NIC	ENSMUSG00000023984.18	novel	4807	9	NA	NA	6	-2792	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	76.6638567955951	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCCTTTTGTCAGTTGC	NA	False	NA	19	True	TATAAA	-16	NA	47922528	47991994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_47922618_47923887_47924043_47960874_47960949_47982968_47984344_47985640_47985846_47989768_47989878_47990588_47990795_47991606
ENSMUSG00000023984.18_11	chr17	+	969	4	ISM	ENSMUSG00000090115.8	ENSMUST00000024779.15	8252	7	43956	5678	1345	4	3prime_fragment	FALSE	canonical	3	71	junction_3	22.7596133534821	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTATGAAGATCCTTTT	NA	False	NA	10	True	TATAAA	-7	NA	47985570	47991985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_47985846_47989768_47989878_47990588_47990795_47991606
ENSMUSG00000023984.18_17	chr17	+	587	3	FSM	ENSMUSG00000023984.18	ENSMUST00000146105.8	599	3	14	-2	5	2	multi-exon	FALSE	canonical	3	27	junction_2	122	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGTTTATTGTCCAGA	NA	False	NA	NA	False	AATAAA	-14	NA	47922527	47961216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47922618_47923887_47924043_47960874
ENSMUSG00000023984.18_3	chr17	+	5257	8	NIC	ENSMUSG00000023984.18	novel	4807	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	25	junction_7	81.5645481211297	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATTGTGGTTTGCATG	NA	False	NA	20	True	CATAAA	-15	NA	47922513	47994786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_47922618_47923887_47924043_47960874_47960949_47982968_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47991606
ENSMUSG00000023984.18_5	chr17	+	1020	1	NIC	ENSMUSG00000023984.18	novel	2168	4	NA	NA	37661	4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTTATTGTCCAGAAC	NA	False	NA	NA	False	AATAAA	-16	NA	47960198	47961218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_47960200_47961200
ENSMUSG00000023984.18_6	chr17	+	1672	5	ISM	ENSMUSG00000090115.8	ENSMUST00000024779.15	8252	7	41964	5670	-66	12	3prime_fragment	FALSE	canonical	3	71	junction_4	30.9141957682874	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGATCCTTTTGTCAGTTG	NA	False	NA	18	True	TATAAA	-15	NA	47983578	47991993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990795_47991606
ENSMUSG00000023987.15_0	chr17	+	1386	9	FSM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	0	2	0	-2	multi-exon	FALSE	canonical	3	26	junction_3	162.479181358721	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCAGCCTGTTGAGTCAT	NA	False	NA	14	True	AATAAA	-14	NA	48037766	48045405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_48037890_48039666_48039827_48040176_48040295_48041018_48041138_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_15	chr17	+	631	4	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	5798	-1	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	164.050805138733	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAGCCTGTTGAGTCATT	NA	False	NA	15	True	AATAAA	-15	NA	48043566	48045406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_48043651_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_16	chr17	+	783	3	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	5884	0	5882	0	3prime_fragment	FALSE	canonical	3	421	junction_1	1	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48043650	48045407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_3	chr17	+	945	6	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	3294	0	3292	0	3prime_fragment	FALSE	canonical	3	54	junction_1	149.361842516755	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48041060	48045407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_48041138_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_6	chr17	+	689	5	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	3932	4	3930	-4	3prime_fragment	FALSE	canonical	3	133	junction_1	119.423615755009	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGACCAGCCTGTTGAGTC	NA	False	NA	12	True	AATAAA	-12	NA	48041698	48045403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_7	chr17	+	998	4	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	5211	2	5209	-2	3prime_fragment	FALSE	canonical	3	283	junction_1	65.5303152916436	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCAGCCTGTTGAGTCAT	NA	False	NA	14	True	AATAAA	-14	NA	48042977	48045405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023988.9_0	chr17	-	1807	7	FSM	ENSMUSG00000023988.9	ENSMUST00000024783.9	3854	7	259	1788	259	-1788	multi-exon	FALSE	canonical	3	435	junction_6	15.1180539605981	565	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACAGAAACCTCACCCCAC	2600	False	NA	NA	False	NA	NA	NA	47922158	47912043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47912824_47913316_47913420_47913562_47913724_47914780_47914915_47915179_47915319_47917763_47917927_47921831
ENSMUSG00000023990.19_0	chr17	+	2280	9	FSM	ENSMUSG00000023990.19	ENSMUST00000086932.10	2342	9	58	4	58	0	multi-exon	FALSE	canonical	3	431	junction_4	27.2370955683604	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATGTTGTCCTGGCTCTG	NA	False	NA	14	True	AGTAAA	-14	NA	48048012	48103340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_48048242_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
ENSMUSG00000023990.19_19	chr17	+	2155	9	NIC	ENSMUSG00000023990.19	novel	2296	8	NA	NA	962	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	141.519378090069	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATGTTGTCCTGGCTCTG	NA	False	NA	14	True	AGTAAA	-14	NA	48050789	48103340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_48050894_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
ENSMUSG00000023991.17_2	chr17	-	3355	17	FSM	ENSMUSG00000023991.17	ENSMUST00000113265.8	3999	17	2	642	2	-7	multi-exon	FALSE	canonical	3	59	junction_11	26.5099480148491	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCAAAACTTTTTGTT	NA	False	NA	-14	True	NA	NA	NA	48235568	48178699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186614_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189420_48189531_48189680_48191187_48191275_48191694_48191818_48199049_48199146_48215220_48215460_48235130
ENSMUSG00000023991.17_29	chr17	-	3241	17	FSM	ENSMUSG00000023991.17	ENSMUST00000097311.9	3197	17	-55	11	-14	-7	multi-exon	TRUE	canonical	3	24	junction_7	35.8812603422734	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCAAAACTTTTTGTT	NA	False	NA	-14	True	NA	NA	NA	48235415	48178699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186650_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189423_48189531_48189680_48191187_48191275_48191694_48191818_48199049_48199146_48215220_48215460_48235130
ENSMUSG00000023991.17_6	chr17	-	3251	17	NIC	ENSMUSG00000023991.17	novel	3999	17	NA	NA	-27	-7	combination_of_known_junctions	TRUE	canonical	3	24	junction_7	39.6781977287275	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCAAAACTTTTTGTT	NA	False	NA	-14	True	NA	NA	NA	48235428	48178699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186650_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189420_48189531_48189680_48191187_48191275_48191694_48191818_48199049_48199146_48215220_48215460_48235130
ENSMUSG00000023991.17_9	chr17	-	3355	17	FSM	ENSMUSG00000023991.17	ENSMUST00000113262.2	3198	17	-164	7	5	-7	multi-exon	FALSE	canonical	3	96	junction_11	19.4871752699051	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCAAAACTTTTTGTT	NA	False	NA	-14	True	NA	NA	NA	48235565	48178699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186614_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189423_48189531_48189680_48191187_48191275_48191694_48191818_48199049_48199146_48215220_48215460_48235130
ENSMUSG00000023994.14_0	chr17	-	3595	10	NIC	ENSMUSG00000023994.14	novel	3653	10	NA	NA	5	0	combination_of_known_junctions	TRUE	canonical	3	15	junction_8	14.6245185633537	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGTGACTGGATTTT	NA	False	NA	-15	True	AATAAA	-15	NA	48716764	48693923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706094_48707465_48707609_48716653
ENSMUSG00000023994.14_1	chr17	-	2844	4	ISM	ENSMUSG00000023994.14	ENSMUST00000159237.8	805	6	765	-2215	-313	2	3prime_fragment	TRUE	canonical	3	28	junction_1	12.328828005938	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGACTGGATTTTTG	NA	False	NA	-13	True	AATAAA	-17	NA	48699486	48693921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367
ENSMUSG00000023994.14_10	chr17	-	3638	10	NIC	ENSMUSG00000023994.14	novel	3645	10	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_7	17.1601030242382	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGTGACTGGATTTT	NA	False	NA	-15	True	AATAAA	-15	NA	48716789	48693923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706012_48706097_48707465_48707609_48716653
ENSMUSG00000023994.14_14	chr17	-	3599	10	NIC	ENSMUSG00000023994.14	novel	3653	10	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	1	4	junction_7	17.0235856721139	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACTAGAAAAAGTGACTGG	NA	False	NA	-20	True	AATAAA	-10	NA	48716776	48693928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48706012_48706094_48707465_48707609_48716653
ENSMUSG00000023994.14_2	chr17	-	1772	1	ISM	ENSMUSG00000023994.14	ENSMUST00000078800.13	3653	10	21089	20	3469	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATACTAGAAAAAGTGA	NA	False	NA	-24	True	AATAAA	-6	NA	48695704	48693932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_48693900_48695700
ENSMUSG00000023994.14_3	chr17	-	3514	9	NIC	ENSMUSG00000023994.14	novel	1407	10	NA	NA	2	-9	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	13.067134345372	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATACTAGAAAAAGTGA	NA	False	NA	-24	True	AATAAA	-6	NA	48716776	48693932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48707465_48707609_48716653
ENSMUSG00000023994.14_5	chr17	-	3594	10	FSM	ENSMUSG00000023994.14	ENSMUST00000160319.8	1407	10	-5	-2182	-5	-3	multi-exon	FALSE	canonical	3	12	junction_8	15.1053910742547	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAGAAAAAGTGACTGGAT	NA	False	NA	-18	True	AATAAA	-12	NA	48716763	48693926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
ENSMUSG00000023994.14_6	chr17	-	3532	9	FSM	ENSMUSG00000023994.14	ENSMUST00000162460.8	3706	9	158	16	2	-9	multi-exon	FALSE	canonical	3	22	junction_4	12.5492778676703	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATACTAGAAAAAGTGA	NA	False	NA	-24	True	AATAAA	-6	NA	48716776	48693932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48707465_48707609_48716653
ENSMUSG00000023994.14_7	chr17	-	3615	10	FSM	ENSMUSG00000023994.14	ENSMUST00000046719.14	3645	10	30	0	-5	0	multi-exon	FALSE	canonical	3	12	junction_8	14.7832070227182	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGTGACTGGATTTT	NA	False	NA	-15	True	AATAAA	-15	NA	48716763	48693923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
ENSMUSG00000023994.14_8	chr17	-	3610	10	FSM	ENSMUSG00000023994.14	ENSMUST00000078800.13	3653	10	30	13	-5	-2	multi-exon	FALSE	canonical	3	15	junction_8	14.2837212013545	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAAAAAGTGACTGGATT	NA	False	NA	-17	True	AATAAA	-13	NA	48716763	48693925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706094_48707465_48707609_48716653
ENSMUSG00000023995.13_1	chr17	-	947	5	FSM	ENSMUSG00000023995.13	ENSMUST00000024794.12	956	5	7	2	2	-2	multi-exon	FALSE	canonical	3	26	junction_4	2.06155281280883	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGGCCTGGTGTAAGGTG	NA	False	NA	-3	True	AATAAA	-17	NA	48758543	48755464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_48755829_48756047_48756190_48756910_48757099_48757899_48758090_48758480
ENSMUSG00000024002.19_0	chr17	-	1317	1	ISM	ENSMUSG00000024002.19	ENSMUST00000003726.16	5957	20	86505	2	987	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCTGTCTCCCTGAA	8721	False	NA	-6	True	AATAAA	-17	NA	32416566	32415249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32415200_32416600
ENSMUSG00000024002.19_10	chr17	-	5916	19	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	2	-2	intron_retention	FALSE	canonical	3	148	junction_18	43.3756203926174	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCTGTCTCCCTGAA	NA	False	NA	-6	True	AATAAA	-17	NA	32503694	32415249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503491
ENSMUSG00000024002.19_11	chr17	-	5804	20	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	15	-2	combination_of_known_junctions	FALSE	canonical	3	140	junction_5	48.2561838501388	112	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCTGTCTCCCTGAA	NA	False	NA	-6	True	AATAAA	-17	NA	32503681	32415249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418033_32418131_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503491
ENSMUSG00000024002.19_2	chr17	-	1839	3	ISM	ENSMUSG00000024002.19	ENSMUST00000003726.16	5957	20	85691	2	173	-2	3prime_fragment	FALSE	canonical	3	271	junction_2	34.5	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCTGTCTCCCTGAA	7907	False	NA	-6	True	AATAAA	-17	NA	32417380	32415249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32416795_32417004_32417249_32417330
ENSMUSG00000024002.19_25	chr17	-	1726	2	ISM	ENSMUSG00000024002.19	ENSMUST00000230565.2	747	3	610	-1469	368	-2	3prime_fragment	FALSE	canonical	3	340	junction_1	0	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCTGTCTCCCTGAA	8102	False	NA	-6	True	AATAAA	-17	NA	32417185	32415249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32416795_32417004
ENSMUSG00000024002.19_29	chr17	-	5977	21	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	87	junction_20	62.1417733895646	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCTGTCTCCCTGAA	NA	False	NA	-6	True	AATAAA	-17	NA	32503694	32415249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418033_32418131_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503491
ENSMUSG00000024002.19_32	chr17	-	6076	20	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	2	-2	intron_retention	FALSE	canonical	3	87	junction_19	60.2163228715122	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCTGTCTCCCTGAA	NA	False	NA	-6	True	AATAAA	-17	NA	32503694	32415249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503491
ENSMUSG00000024002.19_9	chr17	-	5676	20	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	9	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_19	65.4612866922249	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCTGTCTCCCTGAA	NA	False	NA	-6	True	AATAAA	-17	NA	32503098	32415249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418033_32418131_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503036
ENSMUSG00000024006.18_0	chr17	-	3285	14	FSM	ENSMUSG00000024006.18	ENSMUST00000009138.13	3351	14	51	15	1	-15	multi-exon	FALSE	canonical	3	678	junction_3	53.1740471465247	1283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGATAATCGAACTGTG	NA	False	NA	-13	True	AATAAA	-6	NA	29226918	29189868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
ENSMUSG00000024006.18_1	chr17	-	1487	1	ISM	ENSMUSG00000024006.18	ENSMUST00000009138.13	3351	14	35620	9	702	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCGAACTGTGGTGGAT	NA	False	NA	-7	True	AATAAA	-12	NA	29191349	29189862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_29189900_29191300
ENSMUSG00000024006.18_6	chr17	-	3288	14	FSM	ENSMUSG00000024006.18	ENSMUST00000119274.3	3354	14	51	15	1	-15	multi-exon	FALSE	canonical	3	151	junction_13	173.563487011723	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGATAATCGAACTGTG	NA	False	NA	-13	True	AATAAA	-6	NA	29226918	29189868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219119_29226684
ENSMUSG00000024006.18_8	chr17	-	3056	8	ISM	ENSMUSG00000024006.18	ENSMUST00000232836.2	2778	13	17984	-823	-521	-15	3prime_fragment	FALSE	canonical	3	678	junction_3	46.4296703166659	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGATAATCGAACTGTG	NA	False	NA	-13	True	AATAAA	-6	NA	29201681	29189868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005
ENSMUSG00000024007.16_0	chr17	-	1189	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	241	32	3	-3	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	1004	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCACTGTTGTGGTCTAG	9930	False	NA	-31	True	AATAAA	-16	NA	29482919	29469808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
ENSMUSG00000024008.17_0	chr17	-	2434	14	NNC	ENSMUSG00000024008.17	novel	5708	21	NA	NA	-4999	1	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_8	10.3443664455472	117	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAGACCCCCCCTCTCCT	3125	False	NA	-8	True	AGTAAA	-15	NA	29408076	29376888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29408003
ENSMUSG00000024008.17_10	chr17	-	1463	3	ISM	ENSMUSG00000024008.17	ENSMUST00000126993.8	2332	12	23722	-1	-876	1	3prime_fragment	FALSE	canonical	3	90	junction_1	5	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAGACCCCCCCTCTCCT	NA	False	NA	-8	True	AGTAAA	-15	NA	29379355	29376888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_29378215_29378925_29379000_29379292
ENSMUSG00000024008.17_16	chr17	-	2770	18	ISM	ENSMUSG00000024008.17	ENSMUST00000024805.15	5708	21	26351	2360	25896	0	3prime_fragment	FALSE	canonical	1	3	junction_14	42.3035659903717	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATAGACCCCCCCTCTCC	6530	False	NA	-9	True	AGTAAA	-14	NA	29430790	29376889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29421478_29421543_29423662_29423723_29428397_29428475_29428663_29428704_29430621
ENSMUSG00000024008.17_2	chr17	-	2315	13	NNC	ENSMUSG00000024008.17	novel	5708	21	NA	NA	-1315	1	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_12	27.4969695299925	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAGACCCCCCCTCTCCT	6809	False	NA	-8	True	AGTAAA	-15	NA	29404392	29376888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29404334
ENSMUSG00000024008.17_4	chr17	-	2590	14	ISM	ENSMUSG00000024008.17	ENSMUST00000024805.15	5708	21	35434	2359	-18630	1	3prime_fragment	FALSE	canonical	3	19	junction_13	23.8741770823823	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAGACCCCCCCTCTCCT	8840	False	NA	-8	True	AGTAAA	-15	NA	29421707	29376888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29421478
ENSMUSG00000024008.17_5	chr17	-	3344	22	NIC	ENSMUSG00000024008.17	novel	5708	21	NA	NA	53	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_15	46.8986943138577	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGATAGACCCCCCCTCT	8400	False	NA	-11	True	AGTAAA	-12	NA	29457088	29376891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29421478_29421543_29421828_29421880_29423662_29423723_29428397_29428475_29428663_29428704_29430621_29430726_29444164_29444212_29445166_29445208_29456586
ENSMUSG00000024011.18_0	chr17	+	1932	7	FSM	ENSMUSG00000024011.18	ENSMUST00000114701.10	3994	7	366	1696	-2	-1	multi-exon	TRUE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGTCTCAGTGCTTTGC	NA	False	NA	NA	False	AATAAA	-12	NA	29538163	29547871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29538366_29541159_29541382_29544846_29544957_29545247_29545337_29545821_29546608_29546811_29546945_29547481
ENSMUSG00000024012.19_0	chr17	-	1721	12	FSM	ENSMUSG00000024012.19	ENSMUST00000118366.9	1897	12	174	2	10	-2	multi-exon	FALSE	canonical	3	643	junction_4	160.665917948029	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCTGTGCAAGCCTCTT	NA	False	NA	-11	True	AATAAA	-19	NA	29566734	29551051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
ENSMUSG00000024012.19_1	chr17	-	1772	12	FSM	ENSMUSG00000024012.19	ENSMUST00000095427.12	1952	12	174	6	10	-2	multi-exon	FALSE	canonical	3	492	junction_4	200.604458475704	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCTGTGCAAGCCTCTT	NA	False	NA	-11	True	AATAAA	-19	NA	29566734	29551051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555140_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
ENSMUSG00000024013.16_0	chr17	+	2380	16	FSM	ENSMUSG00000024013.16	ENSMUST00000024810.8	2640	16	1	259	1	0	multi-exon	TRUE	canonical	0	0	junction_1	0.894427190999916	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACAATGTTGTAGCTTA	NA	False	NA	NA	False	NA	NA	NA	29579888	29598268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29580132_29582684_29582917_29583884_29583966_29584435_29584585_29585944_29586102_29586244_29586384_29586894_29586954_29587157_29587305_29588218_29588312_29592191_29592272_29592357_29592389_29592984_29593078_29593820_29593953_29595801_29595949_29597286_29597434_29597818
ENSMUSG00000024014.9_0	chr17	+	2654	6	FSM	ENSMUSG00000024014.9	ENSMUST00000024811.9	2698	6	40	4	40	0	multi-exon	FALSE	canonical	3	1677	junction_4	112.874443520223	3791	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTGAGTTTTCCATT	NA	False	NA	13	True	AATAAA	-14	NA	29709766	29715082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29710200_29710298_29710406_29710493_29710545_29710638_29711006_29712695_29712873_29713563
ENSMUSG00000024018.19_1	chr17	-	4597	5	FSM	ENSMUSG00000024018.19	ENSMUST00000129091.9	7117	5	6	2514	5	1601	multi-exon	FALSE	canonical	3	16	junction_1	115.181107391794	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAATTGTGACTGAACTTG	NA	False	NA	NA	False	AATAAA	-20	NA	29935977	29914947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29919227_29923343_29923444_29924244_29924298_29924462_29924558_29935907
ENSMUSG00000024018.19_2	chr17	-	920	1	ISM	ENSMUSG00000024018.19	ENSMUST00000129091.9	7117	5	20112	2518	20066	1597	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTCTAATTGTGACTGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29915871	29914951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_29915000_29915900
ENSMUSG00000024018.19_3	chr17	-	413	4	FSM	ENSMUSG00000024018.19	ENSMUST00000128751.3	1397	4	41	943	5	138	multi-exon	FALSE	canonical	3	251	junction_3	23.9072281027215	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATTTCCTGCTGACAAG	NA	False	NA	-4	True	AATAAA	-25	NA	29935977	29923248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29923444_29924244_29924298_29924462_29924558_29935907
ENSMUSG00000024018.19_4	chr17	-	4711	5	NIC	ENSMUSG00000024018.19	novel	7117	5	NA	NA	5	1600	intron_retention	FALSE	canonical	3	10	junction_1	117.737791299141	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAATTGTGACTGAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	29935977	29914948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_29919227_29923228_29923444_29924244_29924298_29924462_29924558_29935907
ENSMUSG00000024019.19_1	chr17	+	3699	24	FSM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	60	2621	34	0	multi-exon	FALSE	canonical	3	368	junction_15	33.7979652859003	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTGGCTCTGTGCTGGG	NA	False	NA	15	True	ATTAAA	-15	NA	29879628	29922332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
ENSMUSG00000024019.19_8	chr17	+	3698	24	NNC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	96.7806750070509	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTGGCTCTGTGCTGGG	NA	False	NA	15	True	ATTAAA	-15	NA	29879628	29922332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917045_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
ENSMUSG00000024026.14_1	chr17	-	1894	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	39	7932	-8	-1	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	2646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAAGGTCTGGGCAGCA	NA	False	NA	-19	True	AATAAA	-17	NA	30831594	30811841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000024026.14_8	chr17	-	855	7	FSM	ENSMUSG00000024026.14	ENSMUST00000167624.2	895	7	40	0	-7	0	multi-exon	FALSE	canonical	3	704	junction_1	947.318613537998	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGGTCTGGGCAGCAAG	NA	False	NA	-17	True	AATAAA	-19	NA	30831593	30811839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_30812049_30813088_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000024027.9_0	chr17	+	4625	13	FSM	ENSMUSG00000024027.9	ENSMUST00000114574.3	5811	13	3	1183	3	-1183	multi-exon	TRUE	canonical	0	0	junction_2	2.40947204913349	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCAAAATCCATCGGTG	5256	False	NA	NA	False	NA	NA	NA	31120793	31158582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_31120929_31127094_31127192_31128197_31128306_31137853_31137973_31138329_31138437_31143474_31143629_31144491_31144652_31148910_31148972_31149500_31149571_31149691_31149781_31150122_31150262_31151586_31151629_31155238
ENSMUSG00000024027.9_4	chr17	+	3669	1	ISM	ENSMUSG00000024027.9	ENSMUST00000114574.3	5811	13	35221	85	35179	-85	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAATCTAAAAGAA	3142	False	NA	NA	False	AATAAA	-13	NA	31156011	31159680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_31156000_31159700
ENSMUSG00000024030.8_1	chr17	+	3573	15	FSM	ENSMUSG00000024030.8	ENSMUST00000024829.8	5832	15	28	2231	-12	1269	multi-exon	FALSE	canonical	3	27	junction_11	5.07947048501744	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAACACCAAAAA	NA	False	NA	NA	False	TATAAA	-18	NA	31276688	31334731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_31276831_31283358_31283603_31311282_31311401_31313619_31313753_31317226_31317278_31323010_31323157_31324490_31324615_31325033_31325149_31327279_31327429_31327588_31327691_31328456_31328626_31329930_31330032_31330194_31330354_31331902_31332022_31333030
ENSMUSG00000024030.8_14	chr17	+	1964	3	ISM	ENSMUSG00000024030.8	ENSMUST00000024829.8	5832	15	53549	2231	271	1269	3prime_fragment	FALSE	canonical	3	40	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAACACCAAAAA	4641	False	NA	NA	False	TATAAA	-18	NA	31330209	31334731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_31330354_31331902_31332022_31333030
ENSMUSG00000024030.8_8	chr17	+	1220	1	ISM	ENSMUSG00000024030.8	ENSMUST00000024829.8	5832	15	56851	2231	3573	1269	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAACACCAAAAA	7943	False	NA	NA	False	TATAAA	-18	NA	31333511	31334731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_31333500_31334700
ENSMUSG00000024033.11_0	chr17	-	1121	9	FSM	ENSMUSG00000024033.11	ENSMUST00000024832.9	1191	9	65	5	20	1	multi-exon	FALSE	canonical	3	52	junction_8	7.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATGAGCCTCTGATGTC	NA	False	NA	-6	True	AATAAA	-21	NA	31496292	31473997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31474194_31477071_31477201_31477761_31477922_31480728_31480801_31484787_31484924_31485316_31485408_31492290_31492397_31492498_31492613_31496175
ENSMUSG00000024033.11_5	chr17	-	1029	8	FSM	ENSMUSG00000024033.11	ENSMUST00000235144.2	1026	8	0	-3	0	-3	multi-exon	FALSE	canonical	3	5	junction_7	21.3101489666213	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAGCCTCTGATGTCGC	NA	False	NA	-4	True	AATAAA	-23	NA	31496312	31473995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31474194_31477071_31477201_31477761_31477922_31480728_31480801_31484787_31484924_31485316_31485408_31492290_31492397_31496175
ENSMUSG00000024036.17_7	chr17	+	3347	20	FSM	ENSMUSG00000024036.17	ENSMUST00000165149.3	3389	20	7	35	7	-3	multi-exon	FALSE	canonical	3	70	junction_8	17.4641698891444	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTAAAAAAAAAAAAAGCC	NA	False	NA	NA	False	AATAAA	-10	NA	31515195	31569666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_31515890_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
ENSMUSG00000024036.17_9	chr17	+	2711	20	NIC	ENSMUSG00000024036.17	novel	3389	20	NA	NA	-6	-3	combination_of_known_junctions	TRUE	canonical	3	25	junction_1	25.6401693159089	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTAAAAAAAAAAAAAGCC	NA	False	NA	NA	False	AATAAA	-10	NA	31515171	31569666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_31515230_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
ENSMUSG00000024037.14_0	chr17	-	1893	11	FSM	ENSMUSG00000024037.14	ENSMUST00000171171.9	4154	11	462	1799	-6	1	multi-exon	FALSE	canonical	3	400	junction_7	39.3020355706928	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGGAATGTTCAGCAGC	NA	False	NA	-16	True	AATAAA	-18	NA	31731263	31715094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728742_31728887_31729551_31729621_31731140
ENSMUSG00000024037.14_8	chr17	-	1949	11	NIC	ENSMUSG00000024037.14	novel	4154	11	NA	NA	-1	1	combination_of_known_junctions	FALSE	canonical	3	9	junction_8	142.866686109814	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGGAATGTTCAGCAGC	NA	False	NA	-16	True	AATAAA	-18	NA	31731258	31715094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722702_31728742_31728887_31729551_31729621_31731140
ENSMUSG00000024038.18_0	chr17	+	448	3	FSM	ENSMUSG00000024038.18	ENSMUST00000064798.16	493	3	37	8	2	-3	multi-exon	FALSE	canonical	3	3604	junction_2	48.5	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTCACTATGTGGTTAT	NA	False	NA	23	True	AATAAA	-13	NA	31739125	31750297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_31739236_31740542_31740667_31750083
ENSMUSG00000024038.18_2	chr17	+	1540	4	FSM	ENSMUSG00000024038.18	ENSMUST00000046288.16	1582	4	32	10	0	-5	multi-exon	FALSE	canonical	3	77	junction_3	1707.19269237216	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCTCACTATGTGGTT	NA	False	NA	21	True	AATAAA	-11	NA	31739123	31750295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_31739236_31740542_31740667_31746283_31747376_31750083
ENSMUSG00000024039.16_0	chr17	-	2391	16	FSM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	7	5	7	-1	multi-exon	FALSE	canonical	3	223	junction_1	29.2615789047686	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGGTCGTGTCGACC	1952	False	NA	-22	True	NA	NA	NA	31856132	31831619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
ENSMUSG00000024039.16_2	chr17	-	2432	17	FSM	ENSMUSG00000024039.16	ENSMUST00000236853.2	6226	17	41	3753	7	1	multi-exon	FALSE	canonical	3	120	junction_2	62.6156118212543	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTGTGGTCGTGTCGAC	1952	False	NA	-23	True	NA	NA	NA	31856132	31831620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
ENSMUSG00000024039.16_7	chr17	-	2433	17	FSM	ENSMUSG00000024039.16	ENSMUST00000067801.14	2533	17	78	22	5	0	multi-exon	FALSE	canonical	3	42	junction_16	84.4695766237762	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGGTCGTGTCGACCT	1950	False	NA	-21	True	NA	NA	NA	31856134	31831618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852126_31856056
ENSMUSG00000024039.16_9	chr17	-	2385	16	FSM	ENSMUSG00000024039.16	ENSMUST00000118504.9	2474	16	80	9	7	-1	multi-exon	FALSE	canonical	3	42	junction_15	69.6264317626575	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATACCTGTGGTCGTGTCG	1952	False	NA	-25	True	NA	NA	NA	31856132	31831622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852126_31856056
ENSMUSG00000024042.8_0	chr17	-	3450	14	FSM	ENSMUSG00000024042.8	ENSMUST00000024839.6	4521	14	-9	1080	-9	-1080	multi-exon	FALSE	canonical	2	135	junction_9	20.6380472449028	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTACTTATTTTTTTCTA	NA	False	NA	-26	True	TATAAA	-11	NA	32074787	32064303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32065618_32066006_32066236_32066868_32067151_32067605_32067823_32067932_32068056_32068492_32068649_32068901_32069126_32069699_32069824_32069914_32070040_32070208_32070371_32070506_32070571_32073181_32073299_32073867_32074039_32074645
ENSMUSG00000024042.8_3	chr17	-	2744	9	ISM	ENSMUSG00000024042.8	ENSMUST00000024839.6	4521	14	4808	1061	579	-1061	3prime_fragment	FALSE	canonical	3	153	junction_2	18.155147341732	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTATACATTTTTGTG	NA	False	NA	-7	True	TATAAA	-30	NA	32069970	32064284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32065618_32066006_32066236_32066868_32067151_32067605_32067823_32067932_32068056_32068492_32068649_32068901_32069126_32069699_32069824_32069914
ENSMUSG00000024043.14_0	chr17	-	2775	1	ISM	ENSMUSG00000024043.14	ENSMUST00000024840.12	5322	18	158628	5	27556	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGATTAAAAGTGTTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	68152487	68149712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_68149700_68152500
ENSMUSG00000024043.14_1	chr17	-	5326	18	FSM	ENSMUSG00000024043.14	ENSMUST00000024840.12	5322	18	-11	7	-11	-7	multi-exon	FALSE	canonical	3	21	junction_17	5.76530609120275	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAGATTAAAAGTGTTT	NA	False	NA	NA	False	AATAAA	-11	NA	68311126	68149714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_68152813_68156047_68156113_68159905_68160031_68162428_68162486_68164410_68164525_68165148_68165347_68168267_68168351_68171457_68171621_68175945_68176024_68178683_68178776_68178877_68179044_68180017_68180161_68182568_68182654_68188430_68188521_68191713_68191804_68203043_68203262_68208276_68208501_68310889
ENSMUSG00000024043.14_4	chr17	-	5312	18	NIC	ENSMUSG00000024043.14	novel	5322	18	NA	NA	4	-3	combination_of_known_junctions	FALSE	canonical	2	3	junction_8	10.197699720269	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTAAAAGTGTTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	68311111	68149710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_68152813_68156047_68156113_68159905_68160031_68162428_68162486_68164410_68164525_68165148_68165347_68168267_68168351_68171457_68171618_68175945_68176024_68178683_68178776_68178877_68179044_68180017_68180161_68182568_68182654_68188430_68188521_68191713_68191804_68203043_68203262_68208276_68208501_68310889
ENSMUSG00000024043.14_5	chr17	-	4339	12	ISM	ENSMUSG00000024043.14	ENSMUST00000164647.8	2754	18	77822	-2394	-70	-3	3prime_fragment	FALSE	canonical	3	33	junction_10	3.73723723474445	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTAAAAGTGTTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	68180113	68149710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_68152813_68156047_68156113_68159905_68160031_68162428_68162486_68164410_68164525_68165148_68165347_68168267_68168351_68171457_68171621_68175945_68176024_68178683_68178776_68178877_68179044_68180017
ENSMUSG00000024044.20_0	chr17	+	4027	20	NIC	ENSMUSG00000024044.20	novel	2703	18	NA	NA	-29	-2	combination_of_known_junctions	TRUE	canonical	1	4	junction_1	15.2069746354206	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGCTCTCGTCTTCCA	NA	False	NA	14	True	AATAAA	-15	NA	69382717	69596978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_69382991_69514880_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69594606_69594724_69595845
ENSMUSG00000024044.20_10	chr17	+	3879	20	FSM	ENSMUSG00000024044.20	ENSMUST00000225977.2	3188	20	-34	-657	1	-4	multi-exon	FALSE	canonical	3	30	junction_19	11.3154222706638	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAAAAGCTCTCGTCTTC	NA	False	NA	12	True	AATAAA	-13	NA	69463805	69596976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69594606_69594724_69595845
ENSMUSG00000024044.20_13	chr17	+	1967	12	ISM	ENSMUSG00000024044.20	ENSMUST00000225316.2	3966	13	4	10259	4	-2892	5prime_fragment	FALSE	canonical	3	33	junction_11	5.96130774936545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGGAGTGTGTTTTGCA	NA	False	NA	NA	False	NA	NA	NA	69463776	69569584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120
ENSMUSG00000024044.20_17	chr17	+	3715	19	NIC	ENSMUSG00000024044.20	novel	3188	20	NA	NA	-6	-4	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	13.0085442007252	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAAAAGCTCTCGTCTTC	NA	False	NA	12	True	AATAAA	-13	NA	69463798	69596976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569174_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69595845
ENSMUSG00000024044.20_2	chr17	+	3921	19	NIC	ENSMUSG00000024044.20	novel	2703	18	NA	NA	27	-4	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	15.4121364715371	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAAAAGCTCTCGTCTTC	NA	False	NA	12	True	AATAAA	-13	NA	69382704	69596976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_69382991_69514880_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69595845
ENSMUSG00000024044.20_20	chr17	+	3834	20	NIC	ENSMUSG00000024044.20	novel	3188	20	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	12.9826220947193	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGCTCTCGTCTTCCA	NA	False	NA	14	True	AATAAA	-15	NA	69463798	69596978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569174_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69594606_69594724_69595845
ENSMUSG00000024044.20_22	chr17	+	1729	9	ISM	ENSMUSG00000024044.20	ENSMUST00000225316.2	3966	13	46	18758	14	366	5prime_fragment	FALSE	canonical	3	49	junction_1	2.6809513236909	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAATTAATAAATA	NA	False	NA	NA	False	NA	NA	NA	69463818	69561085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390
ENSMUSG00000024044.20_32	chr17	+	1818	6	ISM	ENSMUSG00000024044.20	ENSMUST00000238898.2	4368	20	127795	14	2939	-10	3prime_fragment	FALSE	canonical	3	30	junction_5	17.9041894538681	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCATTGAAAAGCTCTC	NA	False	NA	6	True	AATAAA	-7	NA	69591647	69596970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69594606_69594724_69595845
ENSMUSG00000024044.20_40	chr17	+	2944	18	NIC	ENSMUSG00000024044.20	novel	3188	20	NA	NA	-2	63	combination_of_known_junctions	FALSE	canonical	2	4	junction_13	15.4433891972	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTCTAATCTGGTTTT	NA	False	NA	NA	False	AGTAAA	-15	NA	69463837	69596382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69577660_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69595845
ENSMUSG00000024044.20_45	chr17	+	3053	1	NIC	ENSMUSG00000024044.20	novel	4692	22	NA	NA	-3228	1752	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATACTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69578542	69581595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_69578500_69581600
ENSMUSG00000024044.20_6	chr17	+	3765	19	NIC	ENSMUSG00000024044.20	novel	4073	22	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	29	junction_18	11.188066835078	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGCTCTCGTCTTCCA	NA	False	NA	14	True	AATAAA	-15	NA	69463804	69596978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69595845
ENSMUSG00000024045.7_21	chr17	-	2071	6	ISM	ENSMUSG00000024045.7	ENSMUST00000236267.2	1881	10	2848	4	2848	-3	3prime_fragment	FALSE	canonical	3	540	junction_5	30.2562390260257	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTGTTTGTTTTGTT	NA	False	NA	-13	True	AATAAA	-10	NA	32531856	32523669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259
ENSMUSG00000024045.7_3	chr17	-	2683	14	FSM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	31	1017	5	3	multi-exon	TRUE	canonical	3	426	junction_6	74.0811964579343	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTTTGTTTTTGGTT	NA	False	NA	-6	True	AATAAA	-17	NA	32540128	32523662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
ENSMUSG00000024048.16_0	chr17	-	941	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	354	642	-13	-4	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	1187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCTTAGTTGTTTAGC	2281	False	NA	22	True	ATTAAA	-10	NA	71309195	71301292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
ENSMUSG00000024050.19_0	chr17	-	4160	9	FSM	ENSMUSG00000024050.19	ENSMUST00000169488.10	3578	9	1	-583	1	-5	multi-exon	FALSE	canonical	3	73	junction_5	52.6413276333339	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATCCCAGGGCAAACAG	NA	False	NA	-21	True	ATTAAA	-13	NA	32583436	32573039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576959_32577916_32578469_32579011_32579402_32580434_32580939_32581766_32581938_32583155
ENSMUSG00000024050.19_11	chr17	-	4157	9	NIC	ENSMUSG00000024050.19	novel	3578	9	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	2	10	junction_4	72.0797084830398	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATCCCAGGGCAAACAG	NA	False	NA	-21	True	ATTAAA	-13	NA	32583436	32573039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576956_32577916_32578469_32579011_32579402_32580434_32580939_32581766_32581938_32583155
ENSMUSG00000024050.19_12	chr17	-	3095	6	NIC	ENSMUSG00000024050.19	novel	3578	9	NA	NA	1	-5	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	77.8870977762042	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATCCCAGGGCAAACAG	NA	False	NA	-21	True	ATTAAA	-13	NA	32583436	32573039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576959_32577916_32578469_32583155
ENSMUSG00000024050.19_2	chr17	-	3765	8	NIC	ENSMUSG00000024050.19	novel	3578	9	NA	NA	6	-5	combination_of_known_junctions	FALSE	canonical	3	128	junction_5	27.8384552703043	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATCCCAGGGCAAACAG	NA	False	NA	-21	True	ATTAAA	-13	NA	32583431	32573039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576959_32577916_32578469_32580434_32580939_32581766_32581938_32583155
ENSMUSG00000024052.18_0	chr17	+	5718	20	NIC	ENSMUSG00000024052.18	novel	1112	11	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	3	15	junction_7	6.20606440967734	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATTGCATTGGGCTC	NA	False	NA	NA	False	AATAAA	-8	NA	71490551	71556805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_71490740_71521958_71522160_71529049_71529146_71531934_71532237_71536302_71536411_71537266_71537391_71538177_71538515_71540822_71540923_71544380_71544569_71545602_71545697_71546078_71546149_71547806_71547897_71548638_71548722_71549620_71549766_71550282_71550432_71550919_71551007_71551766_71551920_71552113_71552229_71553410_71553515_71553821
ENSMUSG00000024052.18_10	chr17	+	3505	6	ISM	ENSMUSG00000024052.18	ENSMUST00000126681.8	4167	20	38694	-1563	970	-12	3prime_fragment	FALSE	canonical	3	24	junction_1	6.84105255059483	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATAAACTGATTGCATTG	NA	False	NA	NA	False	AATAAA	-3	NA	71550364	71556800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_71550432_71550919_71551007_71551766_71551920_71552113_71552229_71553410_71553515_71553821
ENSMUSG00000024052.18_11	chr17	+	3161	3	ISM	ENSMUSG00000024052.18	ENSMUST00000126681.8	4167	20	40483	-1566	-872	-9	3prime_fragment	FALSE	canonical	3	27	junction_1	5.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACTGATTGCATTGGGC	65	False	NA	NA	False	AATAAA	-6	NA	71552153	71556803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_71552229_71553410_71553515_71553821
ENSMUSG00000024052.18_12	chr17	+	2061	1	ISM	ENSMUSG00000024052.18	ENSMUST00000129635.8	5640	20	63778	1	1725	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCATTGGGCTCCTTCCT	2662	False	NA	NA	False	AATAAA	-14	NA	71554750	71556811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_71554800_71556800
ENSMUSG00000024053.12_0	chr17	-	1146	4	ISM	ENSMUSG00000024053.12	ENSMUST00000233148.2	758	5	12208	-841	-43	-2	3prime_fragment	FALSE	canonical	2	7	junction_2	4.49691252107735	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATGTTCCTTTTCTGTAT	NA	False	NA	-9	True	AATAAA	-13	NA	71563384	71559170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_71560089_71562113_71562243_71562974_71563008_71563318
ENSMUSG00000024054.15_2	chr17	-	7195	48	FSM	ENSMUSG00000024054.15	ENSMUST00000127430.2	7052	48	-151	8	-151	-8	multi-exon	TRUE	canonical	3	108	junction_42	32.1184571856639	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAAATTAGTGGTTTCC	NA	False	NA	NA	False	AATAAA	-21	NA	71782489	71651491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71652361_71655880_71655996_71656584_71656744_71660380_71660553_71665131_71665203_71665342_71665453_71667021_71667213_71668835_71668959_71670014_71670101_71672083_71672204_71672340_71672468_71676802_71676956_71677218_71677351_71677903_71677992_71684008_71684074_71685142_71685259_71686536_71686695_71687123_71687204_71688326_71688453_71693939_71694108_71696737_71696857_71697421_71697511_71698346_71698496_71701711_71701940_71705546_71705685_71707053_71707194_71710092_71710166_71714161_71714259_71718764_71718910_71722029_71722150_71722595_71722674_71733149_71733264_71733434_71733518_71734431_71734539_71735166_71735281_71736456_71736652_71738216_71738401_71743700_71743822_71747898_71748110_71748870_71748962_71750876_71751044_71755507_71755628_71755726_71755842_71762599_71762731_71763412_71763496_71770756_71770919_71772588_71772665_71781973
ENSMUSG00000024054.15_3	chr17	-	3682	24	ISM	ENSMUSG00000024054.15	ENSMUST00000127430.2	7052	48	80531	8	-88	-8	3prime_fragment	FALSE	canonical	3	151	junction_16	30.6191311262465	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAAATTAGTGGTTTCC	NA	False	NA	NA	False	AATAAA	-21	NA	71701807	71651491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_71652361_71655880_71655996_71656584_71656744_71660380_71660553_71665131_71665203_71665342_71665453_71667021_71667213_71668835_71668959_71670014_71670101_71672083_71672204_71672340_71672468_71676802_71676956_71677218_71677351_71677903_71677992_71684008_71684074_71685142_71685259_71686536_71686695_71687123_71687204_71688326_71688453_71693939_71694108_71696737_71696857_71697421_71697511_71698346_71698496_71701711
ENSMUSG00000024055.16_0	chr17	-	1722	13	FSM	ENSMUSG00000024055.16	ENSMUST00000075253.13	1752	13	24	6	1	-6	multi-exon	FALSE	canonical	2	129	junction_12	13.5285192587117	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGACTATGAGCATCAGAC	NA	False	NA	-13	True	AATAAA	-23	NA	33166352	33143667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33151386_33151515_33151602_33151657_33160029_33160175_33165778_33165978_33166286
ENSMUSG00000024055.16_3	chr17	-	1806	12	NIC	ENSMUSG00000024055.16	novel	1752	13	NA	NA	1	3	intron_retention	FALSE	canonical	2	129	junction_11	13.6369696835023	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGTGACTATGAGCATC	NA	False	NA	-17	True	AATAAA	-19	NA	33166352	33143671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33151386_33151657_33160029_33160175_33165778_33165978_33166286
ENSMUSG00000024056.11_0	chr17	-	2147	17	FSM	ENSMUSG00000024056.11	ENSMUST00000024851.10	2201	17	50	4	0	-1	multi-exon	TRUE	canonical	3	248	junction_10	48.8427003246135	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTCCCCTCCCATT	NA	False	NA	-15	True	AATAAA	-15	NA	71833802	71803098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
ENSMUSG00000024059.11_0	chr17	+	4096	16	NNC	ENSMUSG00000024059.11	novel	3357	14	NA	NA	63	-2	at_least_one_novel_splicesite	FALSE	canonical	1	20	junction_1	14.2289220330362	51	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGCGGTGCTGTGTCTTTT	NA	False	NA	1	True	AATAAA	-14	NA	72089674	72165343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_72089842_72096862_72097011_72105951_72106092_72107793_72107888_72108769_72108932_72110550_72110670_72113499_72113737_72117841_72117978_72131684_72131826_72134686_72134777_72135501_72135646_72138199_72138335_72141178_72141303_72144688_72144754_72156886_72156960_72163222
ENSMUSG00000024059.11_24	chr17	+	344	1	ISM	ENSMUSG00000024059.11	ENSMUST00000230160.2	2920	8	47122	0	1721	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGTGCTGTGTCTTTTAC	NA	False	NA	3	True	AATAAA	-16	NA	72165001	72165345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_72165000_72165300
ENSMUSG00000024059.11_5	chr17	+	2167	15	NNC	ENSMUSG00000024059.11	novel	3357	14	NA	NA	64	-5	at_least_one_novel_splicesite	FALSE	canonical	1	20	junction_1	12.538308644848	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCAGCCCACTGTGTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	72089675	72157152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_72089842_72096862_72097011_72105951_72106092_72107793_72107888_72108769_72108932_72110550_72110670_72113499_72113737_72117841_72117978_72131684_72131826_72134686_72134777_72135501_72135646_72138199_72138335_72141178_72141303_72144688_72144754_72156886
ENSMUSG00000024063.14_0	chr17	+	686	3	FSM	ENSMUSG00000024063.14	ENSMUST00000024857.14	3069	3	2	2381	2	221	multi-exon	FALSE	canonical	2	4	junction_1	4	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGAAAATCACCGAGTCG	NA	False	NA	NA	False	NA	NA	NA	73225301	73246561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_73225574_73228182_73228286_73246250
ENSMUSG00000024065.9_0	chr17	+	3635	6	FSM	ENSMUSG00000024065.9	ENSMUST00000024860.9	3659	6	23	1	23	-1	multi-exon	FALSE	canonical	1	2	junction_5	1.35646599662505	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTTTGGTGACTGAGCA	NA	False	NA	2	True	AATACA	-19	NA	74111858	74139088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_74112465_74123225_74123403_74127472_74127571_74134144_74134558_74135040_74135206_74136912
ENSMUSG00000024065.9_1	chr17	+	2156	1	ISM	ENSMUSG00000024065.9	ENSMUST00000024860.9	3659	6	25096	2	25096	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTTTTGGTGACTGAGC	NA	False	NA	1	True	AATACA	-18	NA	74136931	74139087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74136900_74139100
ENSMUSG00000024065.9_2	chr17	+	3242	1	FSM	ENSMUSG00000024065.9	ENSMUST00000233212.2	3528	1	721	-435	14	435	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74111849	74115091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_74111800_74115100
ENSMUSG00000024067.15_0	chr17	-	668	5	FSM	ENSMUSG00000024067.15	ENSMUST00000233581.2	734	5	59	7	4	1	multi-exon	FALSE	canonical	3	1923	junction_4	306.562391692132	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATAGTTGTTGTATAT	NA	False	NA	-17	True	AATAAA	-17	NA	74623399	74606475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623339
ENSMUSG00000024067.15_1	chr17	-	625	4	FSM	ENSMUSG00000024067.15	ENSMUST00000232687.2	694	4	70	-1	70	1	multi-exon	FALSE	canonical	3	2414	junction_1	149.934059580278	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATAGTTGTTGTATAT	NA	False	NA	-17	True	AATAAA	-17	NA	74623128	74606475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038
ENSMUSG00000024067.15_5	chr17	-	749	5	FSM	ENSMUSG00000024067.15	ENSMUST00000112571.5	622	5	48	-175	34	1	multi-exon	FALSE	canonical	3	140	junction_4	1057.76707620345	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATAGTTGTTGTATAT	NA	False	NA	-17	True	AATAAA	-17	NA	74623355	74606475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623214
ENSMUSG00000024068.9_0	chr17	+	4814	17	FSM	ENSMUSG00000024068.9	ENSMUST00000024869.8	4672	17	-146	4	-120	-4	multi-exon	FALSE	canonical	3	114	junction_1	37.2180546744453	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTTTTATAGTCTTCGA	9721	False	NA	29	True	AATAAA	-20	NA	74645861	74698106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_74646441_74658944_74659032_74663080_74663165_74666248_74666345_74674242_74674431_74675822_74675957_74676186_74676281_74678424_74678500_74679253_74679326_74680278_74680355_74680657_74680750_74681117_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
ENSMUSG00000024068.9_1	chr17	+	4809	17	FSM	ENSMUSG00000024068.9	ENSMUST00000224711.2	2066	17	-118	-2625	-118	-4	multi-exon	FALSE	canonical	3	146	junction_1	31.4552633711753	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTTTTATAGTCTTCGA	9723	False	NA	29	True	AATAAA	-20	NA	74645863	74698106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_74646441_74658947_74659032_74663080_74663165_74666248_74666345_74674242_74674431_74675822_74675957_74676186_74676281_74678424_74678500_74679253_74679326_74680278_74680355_74680657_74680750_74681117_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
ENSMUSG00000024068.9_15	chr17	+	4715	16	NIC	ENSMUSG00000024068.9	novel	4672	17	NA	NA	-118	-5	combination_of_known_junctions	FALSE	canonical	3	21	junction_3	64.0070829413954	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTTTTATAGTCTTCG	9723	False	NA	28	True	AATAAA	-19	NA	74645863	74698105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_74646441_74658944_74659032_74663080_74663165_74674242_74674431_74675822_74675957_74676186_74676281_74678424_74678500_74679253_74679326_74680278_74680355_74680657_74680750_74681117_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
ENSMUSG00000024068.9_2	chr17	+	4714	16	FSM	ENSMUSG00000024068.9	ENSMUST00000233611.2	1746	16	-169	-2799	-119	-4	multi-exon	FALSE	canonical	3	21	junction_3	61.0152622072726	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTTTTATAGTCTTCGA	9722	False	NA	29	True	AATAAA	-20	NA	74645862	74698106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_74646441_74658947_74659032_74663080_74663165_74674242_74674431_74675822_74675957_74676186_74676281_74678424_74678500_74679253_74679326_74680278_74680355_74680657_74680750_74681117_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
ENSMUSG00000024069.15_0	chr17	+	1582	14	FSM	ENSMUSG00000024069.15	ENSMUST00000024870.9	2148	14	14	552	1	2	multi-exon	FALSE	canonical	3	152	junction_5	21.3572043468894	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTGGCAGTGAGGTCT	NA	False	NA	16	True	TATAAA	-19	NA	74702616	74730664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
ENSMUSG00000024069.15_17	chr17	+	1802	13	ISM	ENSMUSG00000024069.15	ENSMUST00000024870.9	2148	14	6303	286	-1	-74	3prime_fragment	FALSE	canonical	3	152	junction_4	20.162361799485	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTTAATTGCTACATTT	6180	False	NA	-65	True	AGTAAA	-20	NA	74708905	74730930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
ENSMUSG00000024069.15_2	chr17	+	1480	13	NIC	ENSMUSG00000024069.15	novel	2148	14	NA	NA	1	-4	combination_of_known_splicesites	TRUE	canonical	1	1	junction_7	55.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATGTTCTTGTGGCAGT	NA	False	NA	9	True	TATAAA	-12	NA	74702616	74730657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
ENSMUSG00000024070.16_0	chr17	-	2032	1	ISM	ENSMUSG00000024070.16	ENSMUST00000003191.14	5517	18	61861	9	34003	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACCATACTTTCCTATGT	NA	False	NA	-8	True	AATAAA	-13	NA	79258874	79256842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_79256800_79258900
ENSMUSG00000024070.16_1	chr17	-	5868	19	FSM	ENSMUSG00000024070.16	ENSMUST00000119284.8	4743	19	9	-1134	9	-10	multi-exon	FALSE	canonical	3	97	junction_5	36.6411106225551	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCACCATACTTTCCTATG	NA	False	NA	-9	True	AATAAA	-12	NA	79328236	79256843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_79259460_79260105_79260192_79261902_79262171_79263950_79264050_79264570_79264733_79266460_79266568_79268539_79268613_79269955_79270009_79273603_79273881_79275468_79275547_79278788_79278913_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
ENSMUSG00000024070.16_29	chr17	-	3604	9	NIC	ENSMUSG00000024070.16	novel	5884	19	NA	NA	3	-549	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	42.4941172399192	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGTATGAAGTGTTTAA	NA	False	NA	-8	True	NA	NA	NA	79328242	79277596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_79279270_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
ENSMUSG00000024070.16_4	chr17	-	5327	18	ISM	ENSMUSG00000024070.16	ENSMUST00000119284.8	4743	19	7694	-1135	184	-9	3prime_fragment	FALSE	canonical	3	97	junction_5	36.2608771415235	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACCATACTTTCCTATGT	NA	False	NA	-8	True	AATAAA	-13	NA	79320551	79256842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_79259460_79260105_79260192_79261902_79262171_79263950_79264050_79264570_79264733_79266460_79266568_79268539_79268613_79269955_79270009_79273603_79273881_79275468_79275547_79278788_79278913_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052
ENSMUSG00000024070.16_5	chr17	-	4721	19	FSM	ENSMUSG00000024070.16	ENSMUST00000168887.8	5884	19	6	1157	6	-13	multi-exon	FALSE	canonical	2	15	junction_8	47.0699505726698	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAAACA	NA	False	NA	NA	False	AATATA	-35	NA	79328239	79257990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_79259460_79260105_79260192_79261902_79262171_79263950_79264050_79264570_79264733_79266460_79266568_79268539_79268613_79269955_79270006_79273603_79273881_79275468_79275547_79278788_79278913_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
ENSMUSG00000024072.10_0	chr17	+	1778	6	FSM	ENSMUSG00000024072.10	ENSMUST00000024873.7	2133	6	38	317	-19	0	multi-exon	FALSE	canonical	3	391	junction_2	44.687358391384	352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTTTTACAATACCT	NA	False	NA	5	True	AATAAA	-17	NA	74796525	74806955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_74796790_74799340_74799501_74800922_74801095_74803584_74803663_74805303_74805418_74805965
ENSMUSG00000024073.17_10	chr17	+	7337	37	ISM	ENSMUSG00000024073.17	ENSMUST00000183224.8	14562	73	96554	-165	-10616	165	3prime_fragment	TRUE	canonical	3	23	junction_20	9.20895129483359	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGAGTGTAAACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	74932100	75009543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74932235_74933956_74934111_74936399_74936517_74937954_74938110_74938605_74938733_74941790_74941902_74942757_74942892_74945337_74945466_74946774_74947338_74948627_74948804_74949255_74949353_74949486_74949682_74950289_74950491_74953463_74953744_74954198_74954456_74954711_74954821_74955112_74955335_74956617_74957399_74958902_74959047_74959611_74959742_74961383_74961516_74962166_74962335_74965172_74965347_74966153_74966351_74967376_74967678_74969595_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74996212_74996359_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
ENSMUSG00000024073.17_14	chr17	+	6801	29	ISM	ENSMUSG00000024073.17	ENSMUST00000180037.8	15768	73	111483	286	4056	1	3prime_fragment	FALSE	canonical	3	23	junction_12	9.93415824315276	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTGGGCCTCTGAAT	NA	False	NA	6	True	AATAAA	-24	NA	74946772	75010065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74947338_74948627_74948804_74949255_74949353_74949486_74949682_74950289_74950491_74953463_74953744_74954198_74954456_74954711_74954821_74955112_74955335_74956617_74957399_74958902_74959047_74959611_74959742_74961383_74961516_74962166_74962335_74965172_74965347_74966153_74966351_74967376_74967678_74969595_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74996212_74996359_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
ENSMUSG00000024073.17_23	chr17	+	4574	20	ISM	ENSMUSG00000024073.17	ENSMUST00000180037.8	15768	73	121448	291	-2889	-4	3prime_fragment	FALSE	canonical	3	23	junction_3	9.42590289730182	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCAAACATTTGGGCCTC	6385	False	NA	1	True	AATAAA	-19	NA	74956737	75010060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74957399_74958902_74959047_74959611_74959742_74961383_74961516_74962166_74962335_74965172_74965347_74966153_74966351_74967376_74967678_74969595_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74996212_74996359_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
ENSMUSG00000024073.17_26	chr17	+	3850	19	ISM	ENSMUSG00000024073.17	ENSMUST00000180037.8	15768	73	123681	286	-656	1	3prime_fragment	FALSE	canonical	3	23	junction_2	9.04242401675377	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTGGGCCTCTGAAT	8618	False	NA	6	True	AATAAA	-24	NA	74958970	75010065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74959047_74959611_74959742_74961383_74961516_74962166_74962335_74965172_74965347_74966153_74966351_74967376_74967678_74969595_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74996212_74996359_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
ENSMUSG00000024073.17_28	chr17	+	3774	18	ISM	ENSMUSG00000024073.17	ENSMUST00000180037.8	15768	73	124322	286	-15	1	3prime_fragment	FALSE	canonical	3	23	junction_1	5.48669356064048	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTGGGCCTCTGAAT	9259	False	NA	6	True	AATAAA	-24	NA	74959611	75010065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74959742_74961383_74961516_74962166_74962335_74965172_74965347_74966153_74966351_74967376_74967678_74969595_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74996212_74996359_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
ENSMUSG00000024073.17_29	chr17	+	3440	16	ISM	ENSMUSG00000024073.17	ENSMUST00000180037.8	15768	73	126949	286	855	1	3prime_fragment	FALSE	canonical	3	23	junction_8	5.41438413446585	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTGGGCCTCTGAAT	NA	False	NA	6	True	AATAAA	-24	NA	74962238	75010065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74962335_74965172_74965347_74966153_74966351_74967376_74967678_74969595_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74996212_74996359_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
ENSMUSG00000024073.17_33	chr17	+	1315	5	ISM	ENSMUSG00000024073.17	ENSMUST00000183249.2	4094	18	37909	279	-5058	-1	3prime_fragment	FALSE	canonical	3	26	junction_1	5.11737237261468	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAACATTTGGGCCTCTGA	NA	False	NA	4	True	AATAAA	-22	NA	74999292	75010063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
ENSMUSG00000024073.17_35	chr17	+	834	2	FSM	ENSMUSG00000024073.17	ENSMUST00000182157.2	1030	2	84	112	84	-112	multi-exon	FALSE	canonical	3	40	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATAGCTGGAGACTTGCA	NA	False	NA	72	True	AATAAA	-16	NA	75004434	75009952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_75004515_75009198
ENSMUSG00000024073.17_37	chr17	+	7604	31	ISM	ENSMUSG00000024073.17	ENSMUST00000182944.8	14610	73	-183	86254	-10	602	5prime_fragment	FALSE	canonical	2	12	junction_13	9.07138357694128	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATTGCATTGAAGTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	74835279	74923124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74835797_74853231_74853414_74855707_74855846_74864895_74865090_74868145_74868258_74869013_74869097_74872785_74873170_74880567_74880627_74886159_74887558_74892947_74893098_74896589_74896816_74900083_74900245_74901358_74901449_74901864_74901997_74903851_74904034_74905033_74905168_74905977_74906140_74906231_74906364_74906864_74906963_74909959_74910108_74911488_74911623_74912983_74913119_74915091_74915280_74916053_74916384_74916631_74916732_74917989_74918205_74918342_74918552_74918993_74919341_74920371_74920592_74921293_74921428_74922214
ENSMUSG00000024073.17_38	chr17	+	3602	13	ISM	ENSMUSG00000024073.17	ENSMUST00000183224.8	14562	73	-192	107989	65	-11942	5prime_fragment	FALSE	canonical	3	10	junction_12	9.20258115965298	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGTCCCTGGTTGATTTGA	NA	False	NA	NA	False	NA	NA	NA	74835354	74901389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74835797_74853231_74853414_74855707_74855846_74864895_74865090_74868145_74868258_74869013_74869097_74872785_74873170_74880567_74880627_74886159_74887558_74892947_74893098_74896589_74896816_74900083_74900245_74901316
ENSMUSG00000024073.17_50	chr17	+	2379	11	ISM	ENSMUSG00000024073.17	ENSMUST00000180037.8	15768	73	140534	291	-1378	-4	3prime_fragment	FALSE	canonical	3	23	junction_3	5.9194594347795	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCAAACATTTGGGCCTC	NA	False	NA	1	True	AATAAA	-19	NA	74975823	75010060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_74975919_74977208_74977378_74984160_74984375_74996212_74996359_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
ENSMUSG00000024073.17_53	chr17	+	625	1	ISM	ENSMUSG00000024073.17	ENSMUST00000180037.8	15768	73	174146	291	5085	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCAAACATTTGGGCCTC	3620	False	NA	1	True	AATAAA	-19	NA	75009435	75010060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_75009400_75010100
ENSMUSG00000024074.9_0	chr17	+	6032	17	FSM	ENSMUSG00000024074.9	ENSMUST00000112498.3	5995	17	-48	11	-48	-11	multi-exon	FALSE	canonical	2	7	junction_5	3.24458683810435	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCACCAGAGTTCTGTAG	NA	False	NA	NA	False	AATAAA	-20	NA	78507628	78684010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_78508529_78545170_78545345_78587401_78587645_78588674_78588796_78610415_78610538_78620552_78620736_78622977_78623176_78642655_78642785_78651778_78651936_78653289_78653412_78654505_78654716_78658112_78658329_78662384_78662607_78675220_78675416_78677423_78677547_78680006_78680198_78681484
ENSMUSG00000024074.9_6	chr17	+	2032	1	ISM	ENSMUSG00000024074.9	ENSMUST00000112498.3	5995	17	174302	11	23661	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCACCAGAGTTCTGTAG	NA	False	NA	NA	False	AATAAA	-20	NA	78681978	78684010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_78682000_78684000
ENSMUSG00000024077.16_0	chr17	-	5474	18	FSM	ENSMUSG00000024077.16	ENSMUST00000145910.9	8629	18	607	2548	607	2135	multi-exon	FALSE	canonical	3	23	junction_11	6.14755134531242	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAACCTGGCTATTCAA	NA	False	NA	NA	False	ATTAAA	-11	NA	79044018	78959889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_78963089_78963177_78963265_78964336_78964445_78965312_78965454_78967472_78967641_78969190_78969313_78970489_78970538_78972047_78972224_78974550_78974688_78977179_78977324_78980004_78980116_78984710_78984847_78990256_78990393_78991658_78991827_78995020_78995100_78999822_78999897_79008278_79008383_79043682
ENSMUSG00000024077.16_12	chr17	-	5597	19	NIC	ENSMUSG00000024077.16	novel	8629	18	NA	NA	574	2138	combination_of_known_junctions	FALSE	canonical	1	1	junction_11	12.5589965786176	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTGGCTATTCAAATG	NA	False	NA	NA	False	ATTAAA	-14	NA	79044051	78959886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_78963089_78963177_78963265_78964336_78964445_78965312_78965454_78967472_78967641_78969190_78969313_78970489_78970538_78972047_78972224_78974550_78974688_78977179_78977324_78977783_78977871_78980004_78980116_78984710_78984847_78990256_78990393_78991658_78991827_78995020_78995100_78999822_78999897_79008278_79008383_79043682
ENSMUSG00000024077.16_14	chr17	-	2002	1	ISM	ENSMUSG00000024077.16	ENSMUST00000145910.9	8629	18	82734	2548	29890	2135	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAACCTGGCTATTCAA	4451	False	NA	NA	False	ATTAAA	-11	NA	78961891	78959889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_78959900_78961900
ENSMUSG00000024077.16_4	chr17	-	1402	1	ISM	ENSMUSG00000024077.16	ENSMUST00000145910.9	8629	18	85875	7	33031	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATAGTTCATGTGCTCC	7592	False	NA	-17	True	AATAAA	-7	NA	78958750	78957348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_78957300_78958800
ENSMUSG00000024078.8_0	chr17	+	2708	21	NNC	ENSMUSG00000024078.8	novel	2838	20	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.5724964966845	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTCCTTATTTTGTGAT	NA	False	NA	3	True	AATAAA	-14	NA	75024746	75170558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_75024780_75024882_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170328
ENSMUSG00000024078.8_1	chr17	+	2802	20	FSM	ENSMUSG00000024078.8	ENSMUST00000024882.8	2838	20	29	7	-1	-3	multi-exon	FALSE	canonical	3	124	junction_5	16.0728948897983	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTCCTTATTTTGTGAT	NA	False	NA	3	True	AATAAA	-14	NA	75024755	75170558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170328
ENSMUSG00000024078.8_2	chr17	+	2799	20	FSM	ENSMUSG00000024078.8	ENSMUST00000234568.2	2651	20	-151	3	-1	-3	multi-exon	FALSE	canonical	3	41	junction_19	29.4919116570221	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTCCTTATTTTGTGAT	NA	False	NA	3	True	AATAAA	-14	NA	75024755	75170558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170331
ENSMUSG00000024079.5_0	chr17	-	2347	16	FSM	ENSMUSG00000024079.5	ENSMUST00000024884.5	4313	16	26	1940	1	850	multi-exon	FALSE	canonical	3	40	junction_8	9.77525219907679	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCAATAGGGTTTTTTTT	NA	False	NA	-2	True	ATTAAA	-24	NA	79189976	79161932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_79162691_79162771_79162829_79163995_79164098_79165929_79166062_79171267_79171449_79172730_79172851_79173743_79173867_79176185_79176237_79176904_79176940_79177915_79177965_79178082_79178163_79178577_79178699_79181371_79181509_79183610_79183732_79185570_79185703_79189828
ENSMUSG00000024079.5_14	chr17	-	1701	14	ISM	ENSMUSG00000024079.5	ENSMUST00000024884.5	4313	16	37	3823	12	-1033	5prime_fragment	FALSE	canonical	3	40	junction_6	9.48184188034092	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATACGTGTGTAGCCCGT	NA	False	NA	NA	False	ATTAAA	-17	NA	79189965	79163815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_79164098_79165929_79166062_79171267_79171449_79172730_79172851_79173743_79173867_79176185_79176237_79176904_79176940_79177915_79177965_79178082_79178163_79178577_79178699_79181371_79181509_79183610_79183732_79185570_79185703_79189828
ENSMUSG00000024079.5_3	chr17	-	5165	5	ISM	ENSMUSG00000091549.2_ENSMUSG00000024079.5	ENSMUST00000024884.5	4313	16	18610	-2051	-4983	279	3prime_fragment	FALSE	canonical	3	50	junction_3	8.5146931829632	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGAAATCTGTGTTGGT	NA	False	NA	-7	True	ATTAAA	-9	NA	79171392	79157941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_79162691_79162771_79162829_79163995_79164098_79165929_79166062_79171267
ENSMUSG00000024081.10_0	chr17	-	3308	16	FSM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	15	747	-10	92	multi-exon	FALSE	canonical	3	465	junction_13	57.736720454914	1383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAAGTACTGTCATTTA	NA	False	NA	-45	True	AATAAA	-7	NA	79244480	79227181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
ENSMUSG00000024081.10_1	chr17	-	2645	15	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	1485	747	1456	92	3prime_fragment	FALSE	canonical	3	465	junction_13	59.7598937244636	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAAGTACTGTCATTTA	NA	False	NA	-45	True	AATAAA	-7	NA	79243010	79227181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003
ENSMUSG00000024082.6_0	chr17	+	1391	10	FSM	ENSMUSG00000024082.6	ENSMUST00000024887.6	1749	10	17	341	5	-15	multi-exon	FALSE	canonical	3	388	junction_6	40.441391826191	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAGTAACATAAGTTTT	NA	False	NA	9	True	AATAAA	-18	NA	79244581	79254587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79254303
ENSMUSG00000024082.6_25	chr17	+	1541	9	ISM	ENSMUSG00000024082.6	ENSMUST00000024887.6	1749	10	154	343	-26	-17	3prime_fragment	FALSE	canonical	3	388	junction_5	38.719948024242	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTGAAGTAACATAAGTT	NA	False	NA	7	True	AATAAA	-16	NA	79244718	79254585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79254303
ENSMUSG00000024082.6_9	chr17	+	2878	8	NIC	ENSMUSG00000024082.6	novel	1749	10	NA	NA	-3	-17	intron_retention	FALSE	canonical	3	397	junction_1	39.3550038309058	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTGAAGTAACATAAGTT	NA	False	NA	7	True	AATAAA	-16	NA	79244584	79254585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79251374_79252369_79252514_79253724_79253899_79254303
ENSMUSG00000024083.17_0	chr17	-	4679	10	FSM	ENSMUSG00000024083.17	ENSMUST00000172818.8	4740	10	46	15	-5	0	multi-exon	FALSE	canonical	3	104	junction_6	24	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCATTTCTAATATTTAA	NA	False	NA	-18	True	AATAAA	-15	NA	64638865	64588014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64604718_64604905_64615616_64616662_64618165_64618367_64619995_64620114_64638790
ENSMUSG00000024083.17_1	chr17	-	4493	9	FSM	ENSMUSG00000024083.17	ENSMUST00000172733.2	4488	9	-5	0	-5	0	multi-exon	FALSE	canonical	3	36	junction_5	42.6614580154031	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCATTTCTAATATTTAA	NA	False	NA	-18	True	AATAAA	-15	NA	64638865	64588014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64615616_64616662_64618165_64618367_64619995_64620114_64638790
ENSMUSG00000024083.17_5	chr17	-	1610	1	ISM	ENSMUSG00000024083.17	ENSMUST00000172818.8	4740	10	49287	15	30402	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCATTTCTAATATTTAA	NA	False	NA	-18	True	AATAAA	-15	NA	64589624	64588014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_64588000_64589600
ENSMUSG00000024084.9_0	chr17	+	1551	7	FSM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	348	160	66	-3	multi-exon	TRUE	canonical	3	226	junction_1	6.47216261298253	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGTGAATTTATTTTCA	NA	False	NA	8	True	ATTAAA	-17	NA	79359682	79397647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUSG00000024084.9_10	chr17	+	1229	5	ISM	ENSMUSG00000024084.9	ENSMUST00000233916.2	1473	6	18525	3	-6289	-3	3prime_fragment	FALSE	canonical	3	230	junction_3	5.2618912949623	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGTGAATTTATTTTCA	NA	False	NA	8	True	ATTAAA	-17	NA	79378141	79397647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUSG00000024084.9_5	chr17	+	1401	6	FSM	ENSMUSG00000024084.9	ENSMUST00000233916.2	1473	6	69	3	69	-3	multi-exon	FALSE	canonical	3	32	junction_1	82.0351144327842	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGTGAATTTATTTTCA	NA	False	NA	8	True	ATTAAA	-17	NA	79359685	79397647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_79359818_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUSG00000024085.14_0	chr17	+	6993	22	FSM	ENSMUSG00000024085.14	ENSMUST00000086723.10	6991	22	-4	2	-4	-2	multi-exon	FALSE	canonical	3	46	junction_3	8.61970531560628	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGTCTTCTGGAGTAA	NA	False	NA	7	True	AATAAA	-17	NA	64907726	65062103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_64908866_64931522_64931775_64932301_64932447_64943478_64943651_64958190_64958319_64965895_64966070_64973731_64973919_64976406_64976585_64978842_64979046_64982059_64982243_64986746_64986862_64988549_64988621_65017698_65017865_65019246_65019469_65020556_65020680_65021592_65021708_65038198_65038333_65040718_65040861_65041928_65042063_65047674_65047879_65057778_65057890_65059408
ENSMUSG00000024085.14_10	chr17	+	4525	14	ISM	ENSMUSG00000024085.14	ENSMUST00000086723.10	6991	22	71205	2	-41479	-2	3prime_fragment	FALSE	canonical	3	51	junction_1	8.64555158044746	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGTCTTCTGGAGTAA	NA	False	NA	7	True	AATAAA	-17	NA	64978935	65062103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_64979046_64982059_64982243_64986746_64986862_64988549_64988621_65017698_65017865_65019246_65019469_65020556_65020680_65021592_65021708_65038198_65038333_65040718_65040861_65041928_65042063_65047674_65047879_65057778_65057890_65059408
ENSMUSG00000024085.14_13	chr17	+	3790	9	ISM	ENSMUSG00000024085.14	ENSMUST00000086723.10	6991	22	111607	1	-1077	-1	3prime_fragment	FALSE	canonical	3	55	junction_2	7.06996287118964	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTGTCTTCTGGAGTAAT	NA	False	NA	8	True	AATAAA	-18	NA	65019337	65062104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_65019469_65020556_65020680_65021592_65021708_65038198_65038333_65040718_65040861_65041928_65042063_65047674_65047879_65057778_65057890_65059408
ENSMUSG00000024085.14_15	chr17	+	3094	4	ISM	ENSMUSG00000024085.14	ENSMUST00000086723.10	6991	22	134249	1	21366	-1	3prime_fragment	FALSE	canonical	3	63	junction_1	4.10960933531265	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTGTCTTCTGGAGTAAT	NA	False	NA	8	True	AATAAA	-18	NA	65041979	65062104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_65042063_65047674_65047879_65057778_65057890_65059408
ENSMUSG00000024085.14_16	chr17	+	2923	3	ISM	ENSMUSG00000024085.14	ENSMUST00000086723.10	6991	22	140031	2	27148	-2	3prime_fragment	FALSE	canonical	3	69	junction_1	2	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGTCTTCTGGAGTAA	NA	False	NA	7	True	AATAAA	-17	NA	65047761	65062103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_65047879_65057778_65057890_65059408
ENSMUSG00000024085.14_18	chr17	+	1666	1	ISM	ENSMUSG00000024085.14	ENSMUST00000086723.10	6991	22	152707	2	39824	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGTCTTCTGGAGTAA	NA	False	NA	7	True	AATAAA	-17	NA	65060437	65062103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_65060400_65062100
ENSMUSG00000024085.14_6	chr17	+	5700	21	ISM	ENSMUSG00000024085.14	ENSMUST00000086723.10	6991	22	23946	2	23946	-2	3prime_fragment	FALSE	canonical	3	46	junction_2	8.76627058674326	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGTCTTCTGGAGTAA	NA	False	NA	7	True	AATAAA	-17	NA	64931676	65062103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_64931775_64932301_64932447_64943478_64943651_64958190_64958319_64965895_64966070_64973731_64973919_64976406_64976585_64978842_64979046_64982059_64982243_64986746_64986862_64988549_64988621_65017698_65017865_65019246_65019469_65020556_65020680_65021592_65021708_65038198_65038333_65040718_65040861_65041928_65042063_65047674_65047879_65057778_65057890_65059408
ENSMUSG00000024085.14_8	chr17	+	4957	16	ISM	ENSMUSG00000024085.14	ENSMUST00000086723.10	6991	22	66029	0	-46655	0	3prime_fragment	FALSE	canonical	3	51	junction_1	8.51404069105198	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTCTTCTGGAGTAATT	NA	False	NA	9	True	AATAAA	-19	NA	64973759	65062105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_64973919_64976406_64976585_64978842_64979046_64982059_64982243_64986746_64986862_64988549_64988621_65017698_65017865_65019246_65019469_65020556_65020680_65021592_65021708_65038198_65038333_65040718_65040861_65041928_65042063_65047674_65047879_65057778_65057890_65059408
ENSMUSG00000024091.10_0	chr17	-	1610	6	FSM	ENSMUSG00000024091.10	ENSMUST00000024897.10	3369	6	29	1730	29	363	multi-exon	FALSE	canonical	3	3309	junction_3	105.717737395387	3252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATAGCTTGTTTGTGTCTGT	2992	False	NA	-9	True	AATAAA	-22	NA	65920521	65887051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_65887843_65889574_65889749_65899285_65899367_65900434_65900539_65901896_65902050_65920214
ENSMUSG00000024095.16_0	chr17	-	2646	13	FSM	ENSMUSG00000024095.16	ENSMUST00000184635.8	3009	13	10	353	10	-3	multi-exon	FALSE	canonical	0	0	junction_9	159.429974178843	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAATGTGTTCATCTTC	3580	False	NA	NA	False	TATAAA	-12	NA	80369646	80337268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
ENSMUSG00000024095.16_1	chr17	-	2640	13	FSM	ENSMUSG00000024095.16	ENSMUST00000061331.14	3116	13	117	359	10	-9	multi-exon	FALSE	non_canonical	0	0	junction_9	159.429974178843	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATAAGTTAATGTGTTC	3580	False	NA	NA	False	TATAAA	-6	NA	80369646	80337274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356290_80357234_80357322_80358056_80358295_80360951_80361071_80369085
ENSMUSG00000024096.18_1	chr17	-	3645	10	FSM	ENSMUSG00000024096.18	ENSMUST00000166543.10	3799	10	487	-333	-357	-15	multi-exon	FALSE	canonical	1	126	junction_9	189.388163682976	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	AATAAA	-16	NA	66192306	66155427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66192180
ENSMUSG00000024096.18_2	chr17	-	1390	1	ISM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	35132	15	9223	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	AATAAA	-16	NA	66156817	66155427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66155400_66156800
ENSMUSG00000024096.18_5	chr17	-	3680	10	FSM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	116	15	116	-15	multi-exon	FALSE	canonical	1	202	junction_3	142.261973611371	831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	AATAAA	-16	NA	66191833	66155427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66191672
ENSMUSG00000024096.18_8	chr17	-	3767	10	NIC	ENSMUSG00000024096.18	novel	3811	10	NA	NA	-66	-15	combination_of_known_junctions	FALSE	canonical	1	23	junction_9	213.995384743125	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	AATAAA	-16	NA	66191464	66155427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66191216
ENSMUSG00000024097.12_0	chr17	-	2267	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	4	17	2	-17	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGATTGAACAAATAATCC	NA	False	NA	-28	True	AATAAA	-6	NA	80514730	80507525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_3	chr17	-	1918	7	FSM	ENSMUSG00000024097.12	ENSMUST00000235036.2	1921	7	4	-1	2	-1	multi-exon	FALSE	canonical	3	1059	junction_3	429.146601472685	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTGATTTTTGTGTTC	NA	False	NA	-8	True	AATAAA	-15	NA	80514730	80508739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_4	chr17	-	2234	8	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	2	-17	combination_of_known_junctions	FALSE	canonical	3	229	junction_3	678.209978922608	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGATTGAACAAATAATCC	NA	False	NA	-28	True	AATAAA	-6	NA	80514730	80507525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_5	chr17	-	1927	7	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	2	-1	intron_retention	FALSE	canonical	3	759	junction_3	536.547735268934	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTGATTTTTGTGTTC	NA	False	NA	-8	True	AATAAA	-15	NA	80514730	80508739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_6	chr17	-	2258	8	FSM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	2	-1220	2	-17	multi-exon	FALSE	canonical	3	1059	junction_3	412.241508371597	680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGATTGAACAAATAATCC	NA	False	NA	-28	True	AATAAA	-6	NA	80514730	80507525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_7	chr17	-	3302	6	NIC	ENSMUSG00000024097.12	novel	1921	7	NA	NA	2	-1	intron_retention	FALSE	canonical	3	1956	junction_1	145.974792344432	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTTTTGATTTTTGTGT	NA	False	NA	-10	True	AATAAA	-13	NA	80514730	80508741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_80509032_80509597_80509634_80510119_80511662_80511741_80512868_80513276_80513458_80514603
ENSMUSG00000024098.7_0	chr17	-	4008	5	FSM	ENSMUSG00000024098.7	ENSMUST00000024906.6	4086	5	57	21	-32	-21	multi-exon	FALSE	canonical	3	222	junction_1	25.0636689253589	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAGAAATGACTGTG	8751	False	NA	-20	True	NA	NA	NA	66258164	66230080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_66233462_66236541_66236809_66244795_66244896_66255652_66255810_66258061
ENSMUSG00000024098.7_3	chr17	-	3909	4	NIC	ENSMUSG00000024098.7	novel	4086	5	NA	NA	-33	-21	intron_retention	FALSE	canonical	2	11	junction_2	115.274551494344	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAGAAATGACTGTG	8750	False	NA	-20	True	NA	NA	NA	66258165	66230080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_66233462_66236541_66236809_66255652_66255810_66258061
ENSMUSG00000024098.7_4	chr17	-	2676	1	ISM	ENSMUSG00000024098.7	ENSMUST00000024906.6	4086	5	25474	12	657	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGACTGTGAGTCATGTT	NA	False	NA	-11	True	AATAAA	-7	NA	66232747	66230071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66230100_66232700
ENSMUSG00000024099.16_1	chr17	-	833	8	FSM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	61	803	-3	0	multi-exon	FALSE	canonical	3	4006	junction_3	144.496027768297	1139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAGCTTTATTCGGTTT	5513	False	NA	-11	True	AATAAA	-15	NA	66408493	66386435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
ENSMUSG00000024101.16_15	chr17	+	1986	11	NIC	ENSMUSG00000024101.16	novel	1831	11	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	39.5182236442885	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGAGCTGTCCTTTT	NA	False	NA	24	True	AATAAA	-32	NA	66418654	66426442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_66418897_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
ENSMUSG00000024101.16_16	chr17	+	1745	10	ISM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	2217	0	-1823	0	3prime_fragment	FALSE	canonical	3	104	junction_7	14.5381575411521	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGAGCTGTCCTTTT	NA	False	NA	24	True	AATAAA	-32	NA	66420856	66426442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
ENSMUSG00000024101.16_2	chr17	+	1779	11	FSM	ENSMUSG00000024101.16	ENSMUST00000072383.14	2905	11	68	1058	-32	-2	multi-exon	FALSE	canonical	3	38	junction_1	29.1082462542833	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGTGGGAGCTGTCCTT	NA	False	NA	22	True	AATAAA	-30	NA	66418607	66426440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_66418645_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
ENSMUSG00000024101.16_6	chr17	+	1818	11	FSM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	13	0	5	0	multi-exon	FALSE	canonical	0	0	junction_1	39.5182236442885	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGAGCTGTCCTTTT	NA	False	NA	24	True	AATAAA	-32	NA	66418652	66426442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_66418727_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
ENSMUSG00000024104.12_20	chr6	+	4212	29	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	3	101	junction_25	57.5563942616992	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	10	True	AATAAA	-13	NA	116185088	116239626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233576_116233790_116235602_116236218_116237451_116237630_116239295
ENSMUSG00000024104.12_25	chr6	+	4261	30	ISM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	104	21	5	0	3prime_fragment	FALSE	canonical	3	196	junction_26	50.0417661468529	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	10	True	AATAAA	-13	NA	116185102	116239626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
ENSMUSG00000024104.12_3	chr6	+	4172	30	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	101	junction_26	58.2477793996823	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	10	True	AATAAA	-13	NA	116185049	116239626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233576_116233790_116235602_116236218_116237451_116237630_116239295
ENSMUSG00000024104.12_4	chr6	+	4239	31	FSM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	47	21	-10	0	multi-exon	TRUE	canonical	3	196	junction_27	51.0355975983648	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	10	True	AATAAA	-13	NA	116185045	116239626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
ENSMUSG00000024105.4_0	chr17	-	2006	2	ISM	ENSMUSG00000024105.4	ENSMUST00000024914.4	2544	4	34809	20	34809	-20	3prime_fragment	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTCCTGGGAGACCGAC	NA	False	NA	NA	False	NA	NA	NA	66866807	66861519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66863260_66866541
ENSMUSG00000024114.16_1	chr17	-	2132	3	FSM	ENSMUSG00000024114.16	ENSMUST00000141788.2	903	3	-35	-1194	-12	0	multi-exon	FALSE	canonical	3	22	junction_1	4.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGGATGCCTTTAA	NA	False	NA	-6	True	NA	NA	NA	24063158	24060025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24061500_24062415_24062846_24062930
ENSMUSG00000024114.16_3	chr17	-	1735	5	FSM	ENSMUSG00000024114.16	ENSMUST00000151797.3	1799	5	11	53	-6	-53	multi-exon	FALSE	canonical	3	18	junction_2	4.71036092035419	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGCTTCGTTCACATA	NA	False	NA	-32	True	NA	NA	NA	24063135	24060078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24061500_24062415_24062585_24062812_24062846_24062930_24062958_24063050
ENSMUSG00000024114.16_6	chr17	-	1665	3	NIC	ENSMUSG00000024114.16	novel	1799	5	NA	NA	1	-56	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	9	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTCTGGCTTCGTTCAC	NA	False	NA	-35	True	NA	NA	NA	24063128	24060081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24061500_24062415_24062585_24063050
ENSMUSG00000024114.16_8	chr17	-	1800	4	NIC	ENSMUSG00000024114.16	novel	1799	5	NA	NA	5	-56	intron_retention	FALSE	canonical	3	18	junction_2	2.49443825784929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTCTGGCTTCGTTCAC	NA	False	NA	-35	True	NA	NA	NA	24063118	24060081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24061500_24062415_24062585_24062812_24062958_24063050
ENSMUSG00000024114.16_9	chr17	-	1983	4	NIC	ENSMUSG00000024114.16	novel	1799	5	NA	NA	-7	-51	intron_retention	FALSE	canonical	3	22	junction_1	3.85861230093008	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTTCGTTCACATACC	NA	False	NA	-30	True	NA	NA	NA	24063153	24060076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24061500_24062415_24062846_24062930_24062958_24063050
ENSMUSG00000024118.15_0	chr17	-	1948	10	FSM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	18	200	18	-15	multi-exon	FALSE	canonical	3	183	junction_7	23.2426810463471	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTATGAGCTGGAGAGA	3355	False	NA	-15	True	AATAAA	-6	NA	24439746	24434227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439490_24439590_24439664
ENSMUSG00000024118.15_1	chr17	-	2078	9	FSM	ENSMUSG00000024118.15	ENSMUST00000137648.8	2160	9	76	6	15	-6	multi-exon	FALSE	canonical	3	185	junction_8	21.2485293608758	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGGAGAGATGGCTTGAC	3352	False	NA	-6	True	AATAAA	-15	NA	24439749	24434218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439285_24439490_24439590_24439664
ENSMUSG00000024118.15_10	chr17	-	2240	9	NIC	ENSMUSG00000024118.15	novel	2160	9	NA	NA	-10	-12	intron_retention	FALSE	canonical	3	19	junction_7	69.7222166888001	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTCAAAAGTACCGGG	3364	False	NA	NA	False	NA	NA	NA	24439737	24434039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439285_24439495_24439590_24439664
ENSMUSG00000024118.15_12	chr17	-	2111	10	NIC	ENSMUSG00000024118.15	novel	2166	10	NA	NA	1	-12	intron_retention	FALSE	canonical	3	19	junction_8	65.8383729904126	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTCAAAAGTACCGGG	3375	False	NA	NA	False	NA	NA	NA	24439726	24434039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439495_24439590_24439664
ENSMUSG00000024118.15_33	chr17	-	1560	7	ISM	ENSMUSG00000024118.15	ENSMUST00000137648.8	2160	9	872	9	636	-9	3prime_fragment	FALSE	canonical	3	199	junction_1	19.0233774311737	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGCTGGAGAGATGGCTT	4148	False	NA	-9	True	AATAAA	-12	NA	24438953	24434221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704
ENSMUSG00000024120.13_2	chr17	-	4384	38	FSM	ENSMUSG00000024120.13	ENSMUST00000112308.9	4393	38	0	9	0	-9	multi-exon	FALSE	canonical	3	476	junction_25	55.1799102769645	1272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTAAGTGTTTATGTA	NA	False	NA	-15	True	AATAAA	-7	NA	85097986	85012683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_85012901_85013326_85013470_85014521_85014607_85015515_85015591_85017718_85017835_85017962_85018103_85020120_85020323_85024054_85024144_85030124_85030252_85033730_85033840_85033957_85034101_85038572_85038664_85039176_85039246_85047497_85047605_85047971_85048097_85056388_85056597_85057935_85058022_85058651_85058783_85059736_85059851_85060156_85060202_85060541_85060620_85060832_85060940_85061968_85062027_85063685_85063714_85069379_85069447_85071879_85071974_85074420_85074540_85077022_85077131_85077427_85077534_85077781_85077928_85078270_85078416_85078851_85078979_85079520_85079608_85080471_85080531_85080635_85080758_85082816_85082940_85084368_85084563_85097792
ENSMUSG00000024121.14_0	chr17	-	1148	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	34	1	34	-1	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	773	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGGCTTGTGTTCTGGCG	NA	False	NA	NA	False	AATAAA	-14	NA	24388401	24382840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24383583_24383672_24383857_24388179
ENSMUSG00000024122.17_1	chr17	-	7142	14	FSM	ENSMUSG00000024122.17	ENSMUST00000102927.10	7161	14	15	4	-4	-1	multi-exon	FALSE	canonical	3	123	junction_7	13.9033008723802	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACTTTGTTTGCCATGGA	NA	False	NA	-7	True	AATAAA	-14	NA	24360554	24292657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24298117_24298465_24298619_24299351_24299410_24306977_24307196_24310394_24310569_24312164_24312262_24312513_24312583_24317067_24317144_24319784_24319883_24320575_24320721_24325800_24325939_24326202_24326246_24329821_24330092_24360410
ENSMUSG00000024122.17_3	chr17	-	3730	1	ISM	ENSMUSG00000024122.17	ENSMUST00000102927.10	7161	14	64183	3	16386	0	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTTGTTTGCCATGGAG	NA	False	NA	-6	True	AATAAA	-15	NA	24296386	24292656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_24292700_24296400
ENSMUSG00000024127.16_0	chr17	-	2750	15	FSM	ENSMUSG00000024127.16	ENSMUST00000171795.9	2734	15	-22	6	-5	-6	multi-exon	FALSE	canonical	3	148	junction_9	21.6455679584736	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTCTCTTTGTGTA	NA	False	NA	-9	True	NA	NA	NA	85397674	85371963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
ENSMUSG00000024127.16_2	chr17	-	2617	14	ISM	ENSMUSG00000024127.16	ENSMUST00000171795.9	2734	15	1347	0	1344	0	3prime_fragment	FALSE	canonical	3	148	junction_9	20.4317307466053	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTTTGTGTAATTTTG	NA	False	NA	-3	True	TTTAAA	-4	NA	85396305	85371957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767
ENSMUSG00000024127.16_5	chr17	-	2204	14	FSM	ENSMUSG00000024127.16	ENSMUST00000072406.5	3255	14	-15	1066	5	-6	multi-exon	FALSE	canonical	3	23	junction_13	48.4489605166915	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTCTCTTTGTGTA	NA	False	NA	-9	True	NA	NA	NA	85397664	85371963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85397533
ENSMUSG00000024130.17_0	chr17	+	6391	32	FSM	ENSMUSG00000024130.17	ENSMUST00000079594.12	6380	32	-17	6	6	-6	multi-exon	FALSE	canonical	3	9	junction_1	6.38937724033029	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGACCAGTCTTTGAGTC	NA	False	NA	4	True	AATAAA	-11	NA	24571002	24629169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24571226_24579861_24580064_24583450_24583561_24583666_24583932_24585059_24585188_24585741_24585908_24593217_24593478_24595337_24595455_24595638_24595760_24596659_24596834_24600872_24601055_24602873_24603018_24603420_24603551_24604371_24604527_24604790_24604947_24605155_24605367_24606409_24606561_24611861_24611961_24615423_24615611_24616259_24616564_24617308_24617583_24618858_24619064_24619381_24619602_24619767_24619927_24621238_24621412_24623998_24624128_24624218_24624414_24626531_24626720_24627082_24627254_24627510_24627702_24627798_24627873_24628242
ENSMUSG00000024130.17_1	chr17	+	6422	33	FSM	ENSMUSG00000024130.17	ENSMUST00000039013.15	6476	33	48	6	1	-6	multi-exon	FALSE	canonical	3	19	junction_1	5.69230566203186	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGACCAGTCTTTGAGTC	NA	False	NA	4	True	AATAAA	-11	NA	24571044	24629169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24571226_24576892_24576966_24579861_24580064_24583450_24583561_24583666_24583932_24585059_24585188_24585741_24585908_24593217_24593478_24595337_24595455_24595638_24595760_24596659_24596834_24600872_24601055_24602873_24603018_24603420_24603551_24604371_24604527_24604790_24604947_24605155_24605367_24606409_24606561_24611861_24611961_24615423_24615611_24616259_24616564_24617308_24617583_24618858_24619064_24619381_24619602_24619767_24619927_24621238_24621412_24623998_24624128_24624218_24624414_24626531_24626720_24627082_24627254_24627510_24627702_24627798_24627873_24628242
ENSMUSG00000024130.17_10	chr17	+	3912	18	ISM	ENSMUSG00000024130.17	ENSMUST00000079594.12	6380	32	33876	3	21440	-3	3prime_fragment	FALSE	canonical	3	20	junction_3	5.85641339513113	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCAGTCTTTGAGTCATA	NA	False	NA	7	True	AATAAA	-14	NA	24604895	24629172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24604947_24605155_24605367_24606409_24606561_24611861_24611961_24615423_24615611_24616259_24616564_24617308_24617583_24618858_24619064_24619381_24619602_24619767_24619927_24621238_24621412_24623998_24624128_24624218_24624414_24626531_24626720_24627082_24627254_24627510_24627702_24627798_24627873_24628242
ENSMUSG00000024130.17_13	chr17	+	2846	12	ISM	ENSMUSG00000024130.17	ENSMUST00000079594.12	6380	32	46348	7	33912	-7	3prime_fragment	FALSE	canonical	3	22	junction_5	5.66998768345915	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGACCAGTCTTTGAGT	NA	False	NA	3	True	AATAAA	-10	NA	24617367	24629168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24617583_24618858_24619064_24619381_24619602_24619767_24619927_24621238_24621412_24623998_24624128_24624218_24624414_24626531_24626720_24627082_24627254_24627510_24627702_24627798_24627873_24628242
ENSMUSG00000024130.17_16	chr17	+	1539	5	ISM	ENSMUSG00000024130.17	ENSMUST00000117337.2	5202	27	43093	1	43093	-1	3prime_fragment	FALSE	canonical	3	22	junction_3	6.49519052838329	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGTCTTTGAGTCATACA	NA	False	NA	9	True	AATAAA	-16	NA	24626548	24629174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24626720_24627082_24627254_24627510_24627702_24627798_24627873_24628242
ENSMUSG00000024130.17_5	chr17	+	5621	29	ISM	ENSMUSG00000024130.17	ENSMUST00000079594.12	6380	32	12887	1	451	-1	3prime_fragment	FALSE	canonical	3	19	junction_6	5.6635020174836	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGTCTTTGAGTCATACA	NA	False	NA	9	True	AATAAA	-16	NA	24583906	24629174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24583932_24585059_24585188_24585741_24585908_24593217_24593478_24595337_24595455_24595638_24595760_24596659_24596834_24600872_24601055_24602873_24603018_24603420_24603551_24604371_24604527_24604790_24604947_24605155_24605367_24606409_24606561_24611861_24611961_24615423_24615611_24616259_24616564_24617308_24617583_24618858_24619064_24619381_24619602_24619767_24619927_24621238_24621412_24623998_24624128_24624218_24624414_24626531_24626720_24627082_24627254_24627510_24627702_24627798_24627873_24628242
ENSMUSG00000024130.17_7	chr17	+	4896	24	ISM	ENSMUSG00000024130.17	ENSMUST00000079594.12	6380	32	24645	4	12209	-4	3prime_fragment	FALSE	canonical	3	19	junction_1	6.14844717359618	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCAGTCTTTGAGTCAT	2519	False	NA	6	True	AATAAA	-13	NA	24595664	24629171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24595760_24596659_24596834_24600872_24601055_24602873_24603018_24603420_24603551_24604371_24604527_24604790_24604947_24605155_24605367_24606409_24606561_24611861_24611961_24615423_24615611_24616259_24616564_24617308_24617583_24618858_24619064_24619381_24619602_24619767_24619927_24621238_24621412_24623998_24624128_24624218_24624414_24626531_24626720_24627082_24627254_24627510_24627702_24627798_24627873_24628242
ENSMUSG00000024130.17_8	chr17	+	5710	21	NIC	ENSMUSG00000024130.17	novel	6380	32	NA	NA	17509	-648	intron_retention	FALSE	canonical	3	20	junction_2	5.80064651569116	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTGTGTCTGTCAGTG	7819	False	NA	NA	False	AAAACA	-25	NA	24600964	24628527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24603018_24603420_24603551_24604371_24604527_24604790_24604947_24605155_24605367_24606409_24606561_24611861_24611961_24615423_24615611_24616259_24616564_24617308_24617583_24618858_24619064_24619381_24619602_24619767_24619927_24621238_24621412_24623998_24624128_24624218_24624414_24626531_24626720_24627082_24627254_24627510_24627702_24627798_24627873_24628242
ENSMUSG00000024132.7_0	chr17	+	999	7	FSM	ENSMUSG00000024132.7	ENSMUST00000234304.2	1137	7	53	85	-8	15	multi-exon	FALSE	canonical	3	455	junction_1	41.5508390074403	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTACAGCTGCCACATAT	4893	False	NA	9	True	NA	NA	NA	24645667	24658209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24645717_24645826_24645914_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
ENSMUSG00000024132.7_8	chr17	+	1051	6	ISM	ENSMUSG00000024132.7	ENSMUST00000234304.2	1137	7	111	85	48	15	3prime_fragment	FALSE	canonical	3	503	junction_1	25.350345165303	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTACAGCTGCCACATAT	4951	False	NA	9	True	NA	NA	NA	24645725	24658209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24645914_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
ENSMUSG00000024135.11_0	chr17	-	3514	21	FSM	ENSMUSG00000024135.11	ENSMUST00000095187.4	3530	21	13	3	13	-3	multi-exon	FALSE	canonical	3	77	junction_9	11.0027269347194	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGGTGTGCTGTTCA	NA	False	NA	-4	True	AATAAA	-12	NA	86452590	86292095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86452548
ENSMUSG00000024135.11_12	chr17	-	3005	18	ISM	ENSMUSG00000024135.11	ENSMUST00000095187.4	3530	21	8846	3	8846	-3	3prime_fragment	FALSE	canonical	3	77	junction_9	11.5390116096369	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGGTGTGCTGTTCA	1127	False	NA	-4	True	AATAAA	-12	NA	86443757	86292095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591
ENSMUSG00000024135.11_16	chr17	-	2496	15	ISM	ENSMUSG00000024135.11	ENSMUST00000095187.4	3530	21	18984	3	-5920	-3	3prime_fragment	FALSE	canonical	3	77	junction_9	12.1875228937514	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGGTGTGCTGTTCA	NA	False	NA	-4	True	AATAAA	-12	NA	86433619	86292095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538
ENSMUSG00000024135.11_3	chr17	-	668	1	ISM	ENSMUSG00000024135.11	ENSMUST00000234761.2	1474	5	55096	3	55029	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGGTGTGCTGTTCA	NA	False	NA	-4	True	AATAAA	-12	NA	86292763	86292095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_86292100_86292800
ENSMUSG00000024135.11_8	chr17	-	3542	22	NNC	ENSMUSG00000024135.11	novel	3530	21	NA	NA	28	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	28.8156231245209	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGGTGTGCTGTTCAT	NA	False	NA	-3	True	AATAAA	-13	NA	86452575	86292094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_86292912_86295752_86295938_86304933_86304976_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86452548
ENSMUSG00000024137.10_0	chr17	-	2556	14	FSM	ENSMUSG00000024137.10	ENSMUST00000056032.9	2574	14	0	18	0	-15	multi-exon	FALSE	canonical	3	30	junction_6	25.0001183429152	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACATAAAAAACCTGCAG	NA	False	NA	-19	True	NA	NA	NA	24674285	24662770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664526_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
ENSMUSG00000024137.10_1	chr17	-	2546	14	NIC	ENSMUSG00000024137.10	novel	2574	14	NA	NA	-12	-15	combination_of_known_junctions	FALSE	canonical	3	73	junction_6	16.2546306556464	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACATAAAAAACCTGCAG	NA	False	NA	-19	True	NA	NA	NA	24674272	24662770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
ENSMUSG00000024137.10_13	chr17	-	2457	14	NIC	ENSMUSG00000024137.10	novel	2574	14	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_6	31.9209452485688	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTTGTTGTGATTGGG	NA	False	NA	-4	True	AATAAA	-13	NA	24674264	24662755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664526_24664919_24665130_24665487_24665655_24665755_24665816_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
ENSMUSG00000024137.10_21	chr17	-	2463	14	NIC	ENSMUSG00000024137.10	novel	2574	14	NA	NA	0	-18	combination_of_known_junctions	FALSE	canonical	3	30	junction_9	26.3685755236784	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAACATAAAAAACCTG	NA	False	NA	-22	True	NA	NA	NA	24674285	24662773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665816_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
ENSMUSG00000024137.10_5	chr17	-	2633	13	FSM	ENSMUSG00000024137.10	ENSMUST00000226941.2	2642	13	83	-74	2	-15	multi-exon	FALSE	canonical	3	73	junction_5	15.7797338380595	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACATAAAAAACCTGCAG	NA	False	NA	-19	True	NA	NA	NA	24674283	24662770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
ENSMUSG00000024140.11_16	chr17	+	5423	18	NNC	ENSMUSG00000024140.11	novel	5516	16	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	32.1640474996088	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGCTCGTGCCTCTTGT	NA	False	NA	9	True	ATTAAA	-14	NA	87061125	87140837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_87061737_87104543_87104735_87112620_87112773_87113184_87113270_87116785_87116905_87117011_87117218_87125782_87125890_87131107_87131256_87131834_87132050_87133007_87133199_87133932_87134044_87134919_87135426_87136117_87136245_87136413_87136529_87136737_87136912_87138378_87139003_87139058_87139212_87139249
ENSMUSG00000024140.11_2	chr17	+	5419	18	NNC	ENSMUSG00000024140.11	novel	5516	16	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	32.1640474996088	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGCTCGTGCCTCTTG	NA	False	NA	8	True	ATTAAA	-13	NA	87061124	87140836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_87061737_87104543_87104735_87112620_87112773_87113184_87113270_87116785_87116905_87117011_87117218_87125782_87125890_87131107_87131256_87131834_87132050_87133007_87133199_87133932_87134044_87134919_87135426_87136117_87136245_87136413_87136529_87136737_87136912_87138378_87139003_87139058_87139208_87139249
ENSMUSG00000024140.11_3	chr17	+	5516	16	FSM	ENSMUSG00000024140.11	ENSMUST00000024954.11	5516	16	-2	2	-2	-2	multi-exon	FALSE	canonical	3	64	junction_3	13.5078577954545	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGCTCGTGCCTCTTG	NA	False	NA	8	True	ATTAAA	-13	NA	87061125	87140836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_87061737_87104543_87104735_87112620_87112773_87113184_87113270_87116785_87116905_87117011_87117218_87125782_87125890_87131107_87131256_87131834_87132050_87133007_87133199_87133932_87134044_87134919_87135426_87136117_87136245_87136413_87136529_87136737_87136912_87138378
ENSMUSG00000024140.11_51	chr17	+	1485	1	ISM	ENSMUSG00000024140.11	ENSMUST00000024954.11	5516	16	78224	2	7591	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGCTCGTGCCTCTTG	NA	False	NA	8	True	ATTAAA	-13	NA	87139351	87140836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_87139400_87140800
ENSMUSG00000024140.11_8	chr17	+	5419	18	NNC	ENSMUSG00000024140.11	novel	5516	16	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	32.1640474996088	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGCTCGTGCCTCTTGT	NA	False	NA	9	True	ATTAAA	-14	NA	87061127	87140837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_87061737_87104543_87104735_87112620_87112773_87113184_87113270_87116785_87116905_87117011_87117218_87125782_87125890_87131107_87131256_87131834_87132050_87133007_87133199_87133932_87134044_87134919_87135426_87136117_87136245_87136413_87136529_87136737_87136912_87138378_87139003_87139058_87139210_87139249
ENSMUSG00000024142.16_0	chr17	-	3325	9	FSM	ENSMUSG00000024142.16	ENSMUST00000070888.14	3358	9	31	2	0	0	multi-exon	FALSE	canonical	3	60	junction_8	10.0374299499424	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGTGAGGCCGATTGC	9618	False	NA	-4	True	AATAAA	-13	NA	24698021	24692528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697453_24697985
ENSMUSG00000024142.16_11	chr17	-	3260	8	FSM	ENSMUSG00000024142.16	ENSMUST00000234686.2	3855	8	594	1	29	0	multi-exon	FALSE	canonical	3	68	junction_2	8.85483840989242	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGTGAGGCCGATTGC	NA	False	NA	-4	True	AATAAA	-13	NA	24697423	24692528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293
ENSMUSG00000024142.16_15	chr17	-	3680	8	NIC	ENSMUSG00000024142.16	novel	3358	9	NA	NA	-2	0	intron_retention	FALSE	canonical	3	60	junction_7	10.3509833901353	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGTGAGGCCGATTGC	9620	False	NA	-4	True	AATAAA	-13	NA	24698019	24692528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24697000_24697084_24697137_24697293_24697453_24697985
ENSMUSG00000024142.16_2	chr17	-	1866	1	ISM	ENSMUSG00000024142.16	ENSMUST00000234941.2	3223	9	3636	3	2501	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGAGGCCGATTGCT	2184	False	NA	-3	True	AATAAA	-14	NA	24694393	24692527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_24692500_24694400
ENSMUSG00000024142.16_3	chr17	-	3305	9	FSM	ENSMUSG00000024142.16	ENSMUST00000179163.3	3340	9	31	4	0	0	multi-exon	FALSE	canonical	3	12	junction_8	23.0813777751676	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGTGAGGCCGATTGC	9618	False	NA	-4	True	AATAAA	-13	NA	24698021	24692528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697433_24697985
ENSMUSG00000024143.16_1	chr17	+	3957	5	FSM	ENSMUSG00000024143.16	ENSMUST00000024956.15	4151	5	171	23	-39	-23	multi-exon	FALSE	canonical	3	30	junction_4	3.74165738677394	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTTTTATGTAAAGCACT	NA	False	NA	7	True	AATAAA	-17	NA	87270680	87307474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_87271176_87271727_87271787_87301986_87302152_87302431_87302528_87304332
ENSMUSG00000024143.16_7	chr17	+	2685	1	ISM	ENSMUSG00000024143.16	ENSMUST00000024956.15	4151	5	34288	15	2775	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTAAAGCACTGGACTTCT	NA	False	NA	15	True	AATAAA	-25	NA	87304797	87307482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_87304800_87307500
ENSMUSG00000024145.7_1	chr17	-	944	6	FSM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	41	3	41	-3	multi-exon	FALSE	canonical	3	301	junction_5	28.3760462362183	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTGGCTTCAGATGCT	NA	False	NA	-15	True	AATAAA	-12	NA	87332793	87304686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
ENSMUSG00000024145.7_10	chr17	-	1366	5	ISM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	42	10815	42	-10815	5prime_fragment	FALSE	canonical	3	301	junction_4	30.5971812427223	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGCTTTGCCACGTCT	NA	False	NA	NA	False	ATTAAA	-25	NA	87332792	87315498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
ENSMUSG00000024145.7_3	chr17	-	878	5	ISM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	1490	4	1490	-4	3prime_fragment	FALSE	canonical	3	302	junction_2	26.5741886047345	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTGTGGCTTCAGATGC	688	False	NA	-16	True	AATAAA	-11	NA	87331344	87304687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092
ENSMUSG00000024145.7_7	chr17	-	835	5	NIC	ENSMUSG00000024145.7	novel	988	6	NA	NA	41	-3	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	138.539705499904	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTGGCTTCAGATGCT	NA	False	NA	-15	True	AATAAA	-12	NA	87332793	87304686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_87304996_87327828_87327946_87329286_87329379_87331092_87331342_87332725
ENSMUSG00000024146.10_0	chr17	+	1151	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	31	2	-29	-2	multi-exon	FALSE	canonical	3	592	junction_4	35.4427355039083	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGTTGTGTCTTCAATG	NA	False	NA	2	True	AATAAA	-12	NA	87333008	87343236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
ENSMUSG00000024146.10_1	chr17	+	1141	5	FSM	ENSMUSG00000024146.10	ENSMUST00000160269.2	763	5	-43	-335	18	-3	multi-exon	FALSE	canonical	2	8	junction_1	278.799210902757	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTGTTGTGTCTTCAAT	NA	False	NA	1	True	AATAAA	-11	NA	87332995	87343235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_87333082_87335126_87335193_87338435_87338491_87341683_87341788_87342405
ENSMUSG00000024150.13_0	chr17	-	1774	4	FSM	ENSMUSG00000024150.13	ENSMUST00000024963.11	2038	4	40	224	0	-9	multi-exon	FALSE	canonical	3	165	junction_3	69.8108555710038	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAAGCAGCTGTTGA	NA	False	NA	-11	True	AATAAA	-8	NA	87573323	87562094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87573262
ENSMUSG00000024150.13_1	chr17	-	1909	5	FSM	ENSMUSG00000024150.13	ENSMUST00000129616.8	813	5	25	-1121	8	-9	multi-exon	FALSE	canonical	2	8	junction_4	139.054620563288	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAAGCAGCTGTTGA	NA	False	NA	-11	True	AATAAA	-8	NA	87573283	87562094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573219
ENSMUSG00000024150.13_2	chr17	-	1906	5	FSM	ENSMUSG00000024150.13	ENSMUST00000151155.8	603	5	0	-1303	0	-9	multi-exon	FALSE	canonical	3	42	junction_4	129.331695651143	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAAGCAGCTGTTGA	NA	False	NA	-11	True	AATAAA	-8	NA	87573323	87562094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573262
ENSMUSG00000024150.13_3	chr17	-	1999	5	FSM	ENSMUSG00000024150.13	ENSMUST00000144236.9	2017	5	9	9	0	-9	multi-exon	FALSE	canonical	3	15	junction_4	147.031246679065	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAAGCAGCTGTTGA	NA	False	NA	-11	True	AATAAA	-8	NA	87573323	87562094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87571568_87571794_87573262
ENSMUSG00000024150.13_4	chr17	-	1041	1	ISM	ENSMUSG00000024150.13	ENSMUST00000024963.11	2038	4	10228	224	10156	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAAGCAGCTGTTGA	NA	False	NA	-11	True	AATAAA	-8	NA	87563135	87562094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_87562100_87563100
ENSMUSG00000024150.13_5	chr17	-	1751	4	NNC	ENSMUSG00000024150.13	novel	2038	4	NA	NA	15	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	147.196769288218	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAAGCAGCTGTTGA	NA	False	NA	-11	True	AATAAA	-8	NA	87573348	87562094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_87563486_87564574_87564735_87565355_87565518_87573310
ENSMUSG00000024150.13_8	chr17	-	1713	3	ISM	ENSMUSG00000024150.13	ENSMUST00000144236.9	2017	5	7814	10	7773	-10	3prime_fragment	FALSE	canonical	3	299	junction_2	12.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGCAAGCAGCTGTTG	NA	False	NA	-12	True	AATAAA	-7	NA	87565518	87562095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_87563486_87564574_87564735_87565355
ENSMUSG00000024151.14_0	chr17	+	3067	16	FSM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	215	1	5	-1	multi-exon	FALSE	canonical	3	1624	junction_8	132.693531618287	3310	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGGGGGTACCTTGTAT	4876	False	NA	18	True	AATAAA	-15	NA	87979972	88031140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
ENSMUSG00000024155.9_0	chr17	+	2389	11	ISM	ENSMUSG00000024155.9	ENSMUST00000234372.2	1665	13	4	3436	4	-3435	5prime_fragment	FALSE	canonical	0	0	junction_3	0.8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGCAAGTGTTTCACAG	6682	False	NA	NA	False	AGTAAA	-12	NA	25023266	25055326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_25023387_25031977_25032056_25035505_25035564_25038845_25038919_25042505_25042702_25046905_25047007_25047925_25047979_25048063_25048160_25051398_25051498_25052868_25053023_25053965
ENSMUSG00000024155.9_1	chr17	+	1658	13	FSM	ENSMUSG00000024155.9	ENSMUST00000234372.2	1665	13	6	1	6	0	multi-exon	FALSE	canonical	0	0	junction_3	0.862006702732383	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATATGAATGATTTCTTTG	6684	False	NA	NA	False	AATAAA	-20	NA	25023268	25058761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25023387_25031977_25032056_25035505_25035564_25038845_25038919_25042505_25042702_25046905_25047007_25047925_25047979_25048063_25048160_25051398_25051498_25052868_25053023_25053965_25054150_25055409_25055497_25058400
ENSMUSG00000024158.18_1	chr17	+	1122	9	FSM	ENSMUSG00000024158.18	ENSMUST00000118788.8	1191	9	65	4	-21	0	multi-exon	FALSE	canonical	3	330	junction_6	27.6812210713328	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTCTGCTTATGGACT	NA	False	NA	7	True	AAAAAG	-20	NA	25069528	25083420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25069643_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
ENSMUSG00000024158.18_2	chr17	+	4051	8	NIC	ENSMUSG00000024158.18	novel	1191	9	NA	NA	-9	0	intron_retention	FALSE	canonical	3	330	junction_5	26.7154316026203	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTCTGCTTATGGACT	NA	False	NA	7	True	AAAAAG	-20	NA	25069540	25083420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25069643_25071704_25071881_25072605_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
ENSMUSG00000024160.17_0	chr17	+	1567	7	FSM	ENSMUSG00000024160.17	ENSMUST00000117890.8	1641	7	64	10	5	2	multi-exon	FALSE	canonical	3	99	junction_1	37.7388688519174	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCCCAAGCTGCCTGTG	NA	False	NA	NA	False	ATTAAA	-12	NA	25105680	25111113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25105735_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUSG00000024160.17_19	chr17	+	1516	6	ISM	ENSMUSG00000024160.17	ENSMUST00000024976.5	1947	7	612	10	-87	2	3prime_fragment	FALSE	canonical	3	176	junction_3	15.3753048750261	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCCCAAGCTGCCTGTG	NA	False	NA	NA	False	ATTAAA	-12	NA	25106750	25111113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUSG00000024160.17_20	chr17	+	1812	7	FSM	ENSMUSG00000024160.17	ENSMUST00000120943.8	1949	7	128	9	49	3	multi-exon	FALSE	canonical	3	47	junction_1	56.1921307262463	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCCAAGCTGCCTGTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	25105781	25111114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25106080_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUSG00000024160.17_24	chr17	+	1905	7	NNC	ENSMUSG00000024160.17	novel	1953	7	NA	NA	106	2	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	67.8052767530342	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCCCAAGCTGCCTGTG	NA	False	NA	NA	False	ATTAAA	-12	NA	25105838	25111113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_25106231_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUSG00000024160.17_29	chr17	+	2228	7	FSM	ENSMUSG00000024160.17	ENSMUST00000024976.5	1947	7	-293	12	113	0	multi-exon	FALSE	canonical	2	4	junction_1	71.820957944043	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATGCCCAAGCTGCCTG	NA	False	NA	NA	False	ATTAAA	-10	NA	25105845	25111111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25106563_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUSG00000024163.18_2	chr17	-	5442	32	NIC	ENSMUSG00000024163.18	novel	5418	33	NA	NA	2	-3	combination_of_known_junctions	TRUE	canonical	0	0	junction_22	16.9783482121344	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTTTTGTCTTGAAACT	NA	False	NA	-29	True	AATAAA	-10	NA	25155932	25116510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_25118044_25118118_25118269_25118369_25118550_25118648_25118688_25118809_25118924_25119135_25119308_25119471_25119621_25119761_25119830_25119912_25119994_25120079_25120200_25120313_25120504_25120578_25120762_25121251_25121418_25121977_25122137_25122262_25122359_25122898_25123026_25123622_25123794_25123880_25123938_25124141_25124273_25125120_25125203_25125782_25125936_25126302_25126361_25128123_25128136_25131721_25131841_25132503_25132607_25133432_25133680_25137061_25137114_25139445_25139470_25142789_25142882_25143120_25143192_25146802_25146924_25155510
ENSMUSG00000024163.18_3	chr17	-	1096	1	ISM	ENSMUSG00000024163.18	ENSMUST00000115229.10	5603	32	38348	28	1088	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTGTCTTGAAACTTCA	NA	False	NA	-26	True	AATAAA	-13	NA	25117603	25116507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_25116500_25117600
ENSMUSG00000024163.18_31	chr17	-	5432	31	NIC	ENSMUSG00000024163.18	novel	5418	33	NA	NA	2	-1	combination_of_known_splicesites	FALSE	canonical	2	18	junction_22	11.8369008706765	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTGTCTTGAAACTTC	NA	False	NA	-27	True	AATAAA	-12	NA	25155932	25116508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_25118044_25118118_25118269_25118369_25118550_25118648_25118688_25118809_25118924_25119135_25119308_25119471_25119621_25119761_25119830_25119912_25119994_25120079_25120200_25120313_25120504_25120578_25120762_25121251_25121418_25121977_25122137_25122262_25122359_25122898_25123026_25123622_25123794_25123880_25123938_25124141_25124273_25125120_25125203_25125782_25125936_25126302_25126361_25131721_25131841_25132503_25132607_25133432_25133680_25137061_25137114_25139445_25139470_25142789_25142882_25143120_25143192_25146802_25146924_25155510
ENSMUSG00000024163.18_32	chr17	-	2751	11	ISM	ENSMUSG00000024163.18	ENSMUST00000115228.9	5424	31	35413	1	237	0	3prime_fragment	FALSE	canonical	3	51	junction_10	7.51598296964542	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTGTCTTGAAACTTCA	8888	False	NA	-26	True	AATAAA	-13	NA	25120455	25116507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_25118044_25118118_25118269_25118369_25118550_25118648_25118688_25118809_25118924_25119135_25119308_25119471_25119621_25119761_25119830_25119912_25119994_25120079_25120200_25120313
ENSMUSG00000024163.18_41	chr17	-	5459	33	FSM	ENSMUSG00000024163.18	ENSMUST00000117509.8	5418	33	-46	5	2	-4	multi-exon	FALSE	canonical	0	0	junction_23	18.6942661246036	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACTTTTGTCTTGAAAC	NA	False	NA	-30	True	AATAAA	-9	NA	25155932	25116511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25118044_25118118_25118269_25118369_25118550_25118648_25118688_25118809_25118924_25119135_25119308_25119471_25119621_25119761_25119830_25119912_25119994_25120079_25120200_25120313_25120504_25120578_25120762_25121251_25121418_25121977_25122137_25122262_25122359_25122898_25123026_25123622_25123794_25123880_25123938_25124141_25124273_25125120_25125203_25125782_25125936_25126302_25126361_25127384_25127403_25128123_25128136_25131721_25131841_25132503_25132607_25133432_25133680_25137061_25137114_25139445_25139470_25142789_25142882_25143120_25143192_25146802_25146924_25155510
ENSMUSG00000024163.18_61	chr17	-	1177	6	ISM	ENSMUSG00000024163.18	ENSMUST00000115229.10	5603	32	16	20190	-1	-2342	5prime_fragment	FALSE	canonical	3	49	junction_1	8.77724330299668	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCAGCTAGAATGCATTG	NA	False	NA	NA	False	AATAAA	-18	NA	25155935	25136669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_25137114_25139445_25139470_25142789_25142882_25143120_25143192_25146802_25146924_25155510
ENSMUSG00000024165.10_2	chr17	-	2935	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	47	-310	3	310	multi-exon	TRUE	canonical	3	1697	junction_3	70.6872513258225	2937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACATACAGCCTGTGTG	4820	False	NA	-12	True	ATTAAA	-7	NA	25179616	25161133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
ENSMUSG00000024165.10_5	chr17	-	1829	1	Genic_Genomic	ENSMUSG00000024165.10	novel	NA	NA	NA	NA	16652	314	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACAGCCTGTGTGTATT	NA	False	NA	-8	True	ATTAAA	-11	NA	25162958	25161129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_25161100_25163000
ENSMUSG00000024169.17_13	chr17	+	5191	30	NIC	ENSMUSG00000024169.17	novel	5489	30	NA	NA	-10	-3	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	15.4415779815037	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTTCTCTCAAAAGGCTG	7173	False	NA	12	True	AATAAA	-17	NA	25235354	25318458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25235574_25237734_25237913_25239491_25239714_25244523_25244646_25244777_25244921_25247777_25247954_25251058_25251151_25252056_25252164_25252859_25253006_25254676_25254881_25255244_25255318_25255931_25256024_25264022_25264151_25264478_25264597_25267373_25267505_25269247_25269417_25270745_25270878_25274531_25274732_25305816_25305995_25306846_25307038_25307502_25307599_25307773_25307907_25308372_25308517_25309615_25309745_25309867_25310051_25311262_25311470_25311741_25311955_25312036_25312204_25313613_25313756_25317702
ENSMUSG00000024169.17_21	chr17	+	4757	28	ISM	ENSMUSG00000024169.17	ENSMUST00000024983.12	5489	30	4166	1	4158	-1	3prime_fragment	FALSE	canonical	3	43	junction_8	11.2034435231497	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTCTCAAAAGGCTGTA	NA	False	NA	14	True	AATAAA	-19	NA	25239530	25318460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_25239714_25244523_25244646_25244777_25244921_25247777_25247954_25251058_25251151_25252056_25252164_25252859_25253006_25254676_25254881_25255244_25255318_25255931_25256024_25264022_25264151_25264478_25264597_25267373_25267505_25269247_25269417_25270745_25270878_25274531_25274732_25305816_25305995_25306846_25307038_25307502_25307599_25307773_25307907_25308372_25308517_25309615_25309745_25309867_25310051_25311262_25311470_25311741_25311955_25312036_25312204_25313613_25313756_25317702
ENSMUSG00000024169.17_5	chr17	+	5033	30	NIC	ENSMUSG00000024169.17	novel	6942	29	NA	NA	-11	-5	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	15.5658243289342	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTAGTTCTCTCAAAAGGC	6866	False	NA	10	True	AATAAA	-15	NA	25235047	25318456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25235111_25237734_25237913_25239491_25239714_25244523_25244646_25244777_25244921_25247777_25247954_25251058_25251151_25252056_25252164_25252859_25253006_25254676_25254881_25255244_25255318_25255931_25256024_25264022_25264151_25264478_25264597_25267373_25267505_25269247_25269417_25270745_25270878_25274531_25274732_25305816_25305995_25306846_25307038_25307502_25307599_25307773_25307907_25308372_25308517_25309615_25309745_25309867_25310051_25311262_25311470_25311741_25311955_25312036_25312204_25313613_25313756_25317702
ENSMUSG00000024169.17_6	chr17	+	5497	30	FSM	ENSMUSG00000024169.17	ENSMUST00000024983.12	5489	30	-13	5	-13	-5	multi-exon	FALSE	canonical	3	43	junction_2	11.5756314625783	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTAGTTCTCTCAAAAGGC	7170	False	NA	10	True	AATAAA	-15	NA	25235351	25318456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25235879_25237734_25237913_25239491_25239714_25244523_25244646_25244777_25244921_25247777_25247954_25251058_25251151_25252056_25252164_25252859_25253006_25254676_25254881_25255244_25255318_25255931_25256024_25264022_25264151_25264478_25264597_25267373_25267505_25269247_25269417_25270745_25270878_25274531_25274732_25305816_25305995_25306846_25307038_25307502_25307599_25307773_25307907_25308372_25308517_25309615_25309745_25309867_25310051_25311262_25311470_25311741_25311955_25312036_25312204_25313613_25313756_25317702
ENSMUSG00000024170.16_1	chr17	-	3497	21	FSM	ENSMUSG00000024170.16	ENSMUST00000115181.9	3530	21	25	8	12	-1	multi-exon	FALSE	canonical	3	51	junction_18	13.9207578816672	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACACAGGCTGCTTCTGT	NA	False	NA	-9	True	AATAAA	-13	NA	25334916	25318551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334386
ENSMUSG00000024170.16_48	chr17	-	166	1	ISM	ENSMUSG00000024170.16	ENSMUST00000156698.2	4644	10	7213	6	489	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGGAGCAAGCAGAGGT	NA	False	NA	NA	False	NA	NA	NA	25319911	25319745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_25319700_25319900
ENSMUSG00000024170.16_9	chr17	-	3471	21	FSM	ENSMUSG00000024170.16	ENSMUST00000024987.6	3434	21	-37	0	12	0	multi-exon	TRUE	canonical	3	21	junction_20	19.5787512369916	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACAGGCTGCTTCTGTG	NA	False	NA	-8	True	AATAAA	-14	NA	25334916	25318550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334413
ENSMUSG00000024174.10_0	chr17	-	2262	17	FSM	ENSMUSG00000024174.10	ENSMUST00000086876.7	3523	17	-21	1282	8	-1282	multi-exon	FALSE	canonical	1	2	junction_7	6.91804705101086	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATATGTTGAAATGTGTT	NA	False	NA	NA	False	NA	NA	NA	56019599	55960232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_55960519_55961766_55961873_55969462_55969555_55971316_55971406_55972647_55972784_55973411_55973618_55976739_55976897_55979830_55979894_55981051_55981141_55994788_55994959_55999721_55999878_56002026_56002318_56005456_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
ENSMUSG00000024177.10_0	chr17	-	865	5	FSM	ENSMUSG00000024177.10	ENSMUST00000025007.7	1006	5	131	10	2	-4	multi-exon	FALSE	canonical	3	296	junction_2	23.847169643377	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGAAATGGTCTACTT	NA	False	NA	-10	True	ATTAAA	-12	NA	26314445	26310717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26311127_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ENSMUSG00000024177.10_1	chr17	-	916	6	FSM	ENSMUSG00000024177.10	ENSMUST00000236547.2	926	6	2	8	2	-4	multi-exon	FALSE	canonical	3	25	junction_1	147.011019995101	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGAAATGGTCTACTT	NA	False	NA	-10	True	ATTAAA	-12	NA	26314445	26310717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26311127_26311480_26311532_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ENSMUSG00000024177.10_11	chr17	-	2652	2	FSM	ENSMUSG00000024177.10	ENSMUST00000150280.3	995	2	3	-1660	3	-1	multi-exon	FALSE	canonical	3	319	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGTCTACTTACTAGTT	NA	False	NA	-3	True	ATTAAA	-19	NA	26314456	26310710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26313245_26314338
ENSMUSG00000024177.10_3	chr17	-	1006	4	NIC	ENSMUSG00000024177.10	novel	1006	5	NA	NA	-6	0	intron_retention	FALSE	canonical	3	304	junction_1	22.7596133534821	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATGGTCTACTTACTA	NA	False	NA	-6	True	ATTAAA	-16	NA	26314453	26310713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26311127_26312590_26312935_26313110_26313245_26314338
ENSMUSG00000024177.10_9	chr17	-	1187	3	FSM	ENSMUSG00000024177.10	ENSMUST00000236112.2	1176	3	-15	4	1	-4	multi-exon	FALSE	canonical	3	304	junction_1	7.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGAAATGGTCTACTT	NA	False	NA	-10	True	ATTAAA	-12	NA	26314462	26310717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26311127_26312590_26313245_26314338
ENSMUSG00000024180.15_0	chr17	+	3433	13	FSM	ENSMUSG00000024180.15	ENSMUST00000025010.14	3464	13	16	15	-11	-10	multi-exon	FALSE	canonical	3	294	junction_7	42.026446699932	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTTCAAATCAAATGAGT	NA	False	NA	5	True	NA	NA	NA	26332305	26342213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26332542_26335732_26335908_26335992_26336201_26336384_26336513_26336712_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26339512_26339660_26340513_26340631_26340911
ENSMUSG00000024180.15_10	chr17	+	2391	13	NIC	ENSMUSG00000024180.15	novel	3464	13	NA	NA	-11	-1	combination_of_known_junctions	FALSE	canonical	3	35	junction_12	107.829694683587	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCTTGGCTTCTTTCTCCA	NA	False	NA	11	True	AATAAA	-12	NA	26332305	26341320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26332542_26335732_26335908_26335992_26336201_26336384_26336513_26336712_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26339512_26339660_26340513_26340631_26341060
ENSMUSG00000024181.10_0	chr17	+	1023	5	FSM	ENSMUSG00000024181.10	ENSMUST00000025014.10	1068	5	43	2	-1	-2	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGGAGTCCTGTGAGT	NA	False	NA	19	True	AGTAAA	-19	NA	26342516	26345585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345244
ENSMUSG00000024181.10_2	chr17	+	1571	4	NIC	ENSMUSG00000024181.10	novel	1068	5	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	1395	junction_2	20.2703943940144	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGGAGTCCTGTGAGT	NA	False	NA	19	True	AGTAAA	-19	NA	26342516	26345585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26342824_26343529_26344366_26344451_26344539_26345244
ENSMUSG00000024182.17_32	chr17	+	2879	9	ISM	ENSMUSG00000024182.18	ENSMUST00020183805.1	2890	10	4103	-516	435	-1	3prime_fragment	FALSE	canonical	3	227	junction_7	45.5382737375935	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGATATGTGATATACTA	1635	False	NA	10	True	AATAAA	-18	NA	26362026	26414784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_26362551_26392613_26392755_26401463_26401561_26403150_26403289_26406677_26407196_26407547_26407719_26408959_26409206_26412912_26413081_26413908
ENSMUSG00000024182.17_4	chr17	+	3761	11	FSM	ENSMUSG00000024182.18	ENSMUST00000074370.11	3777	11	15	1	15	-1	multi-exon	FALSE	canonical	3	153	junction_9	74.468852549237	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGATATGTGATATACTA	NA	False	NA	10	True	AATAAA	-18	NA	26357676	26414784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26358016_26361591_26362551_26392613_26392755_26401463_26401561_26403150_26403289_26406677_26407196_26407547_26407719_26408959_26409206_26411489_26411598_26412912_26413081_26413908
ENSMUSG00000024182.17_5	chr17	+	3654	10	FSM	ENSMUSG00000024182.18	ENSMUST00020183805.1	2890	10	-248	-516	14	-1	multi-exon	FALSE	canonical	3	227	junction_8	47.4952889151735	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGATATGTGATATACTA	NA	False	NA	10	True	AATAAA	-18	NA	26357675	26414784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26358016_26361591_26362551_26392613_26392755_26401463_26401561_26403150_26403289_26406677_26407196_26407547_26407719_26408959_26409206_26412912_26413081_26413908
ENSMUSG00000024187.16_18	chr17	-	2777	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234262.2	2774	13	-23	20	-23	-1	multi-exon	FALSE	canonical	3	26	junction_11	57.1286924408392	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCAGCGTGAGCCTGCAG	1951	False	NA	-18	True	AATAAA	-30	NA	26463165	26431684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444901_26444998_26462979
ENSMUSG00000024187.16_2	chr17	-	2677	12	FSM	ENSMUSG00000024187.16	ENSMUST00000118487.8	2629	12	-46	-2	-19	-1	multi-exon	FALSE	canonical	3	29	junction_11	57.0232662389834	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCAGCGTGAGCCTGCAG	1955	False	NA	-18	True	AATAAA	-30	NA	26463161	26431684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26462979
ENSMUSG00000024187.16_4	chr17	-	2789	13	FSM	ENSMUSG00000024187.16	ENSMUST00000114988.8	3714	13	36	889	-19	-1	multi-exon	FALSE	canonical	3	154	junction_12	26.8089951736767	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCAGCGTGAGCCTGCAG	1955	False	NA	-18	True	AATAAA	-30	NA	26463161	26431684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462979
ENSMUSG00000024187.16_6	chr17	-	2800	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234687.2	2833	13	32	1	-14	-1	multi-exon	FALSE	canonical	3	90	junction_12	40.5798253103956	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCAGCGTGAGCCTGCAG	1960	False	NA	-18	True	AATAAA	-30	NA	26463156	26431684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462963
ENSMUSG00000024187.16_7	chr17	-	2694	12	FSM	ENSMUSG00000024187.16	ENSMUST00000234175.2	2749	12	54	1	-20	-1	multi-exon	FALSE	canonical	3	10	junction_11	62.3582027847616	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCAGCGTGAGCCTGCAG	1954	False	NA	-18	True	AATAAA	-30	NA	26463162	26431684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26462963
ENSMUSG00000024187.16_9	chr17	-	2765	13	NIC	ENSMUSG00000024187.16	novel	3714	13	NA	NA	-4	8	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	58.4886028783956	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCTGCAGTCTGTCTGG	1970	False	NA	-9	True	AATAAA	-39	NA	26463146	26431675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26432692_26432777_26432881_26433319_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462979
ENSMUSG00000024188.17_0	chr17	+	4936	10	FSM	ENSMUSG00000024188.17	ENSMUST00000114976.9	4934	10	-6	4	-6	-4	multi-exon	FALSE	canonical	3	213	junction_9	132.110877487879	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCTCTTGTCAGGTGTT	NA	False	NA	13	True	NA	NA	NA	26471918	26504474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
ENSMUSG00000024188.17_1	chr17	+	3576	8	NIC	ENSMUSG00000024188.17	novel	2670	9	NA	NA	2	-6	intron_retention	FALSE	canonical	3	531	junction_1	36.4159642049966	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTATTATATGTTTACA	NA	False	NA	7	True	ATTAAA	-19	NA	26471926	26499687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ENSMUSG00000024188.17_2	chr17	+	1645	9	FSM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	49	6	-6	-6	multi-exon	FALSE	canonical	3	393	junction_1	74.6521098161331	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTATTATATGTTTACA	NA	False	NA	7	True	ATTAAA	-19	NA	26471918	26499687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ENSMUSG00000024188.17_3	chr17	+	2702	9	FSM	ENSMUSG00000024188.17	ENSMUST00000133032.8	2670	9	-39	7	-6	-6	multi-exon	FALSE	canonical	3	162	junction_1	146.829354609356	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTATTATATGTTTACA	NA	False	NA	7	True	ATTAAA	-19	NA	26471918	26499687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26472066_26472947_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ENSMUSG00000024188.17_4	chr17	+	1716	10	FSM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	-54	10	-6	-6	multi-exon	FALSE	canonical	3	95	junction_2	196.74976273379	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTATTATATGTTTACA	NA	False	NA	7	True	ATTAAA	-19	NA	26471918	26499687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ENSMUSG00000024188.17_47	chr17	+	2781	1	ISM	ENSMUSG00000024188.17	ENSMUST00000114976.9	4934	10	29773	0	15449	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGTCAGGTGTTTTGT	NA	False	NA	17	True	NA	NA	NA	26501697	26504478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_26501700_26504500
ENSMUSG00000024188.17_6	chr17	+	4994	11	NIC	ENSMUSG00000024188.17	novel	4934	10	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	3	95	junction_2	204.37027670383	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCTCTTGTCAGGTGTT	NA	False	NA	13	True	NA	NA	NA	26471931	26504474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
ENSMUSG00000024188.17_7	chr17	+	2440	10	NIC	ENSMUSG00000024188.17	novel	4934	10	NA	NA	2	2	intron_retention	FALSE	canonical	3	162	junction_1	172.384010028715	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGTTGGGGTATCTGC	NA	False	NA	12	True	AATAAA	-21	NA	26471941	26500944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26472066_26472947_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
ENSMUSG00000024190.8_0	chr17	-	1936	4	NNC	ENSMUSG00000024190.8	novel	1990	4	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	237.31132856791	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGCTCTCCGTGCTTTC	NA	False	NA	-6	True	AATAAA	-14	NA	26727446	26724569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_26725625_26725958_26726179_26726548_26726694_26726930
ENSMUSG00000024190.8_1	chr17	-	1937	4	FSM	ENSMUSG00000024190.8	ENSMUST00000025025.7	1990	4	47	6	0	-5	multi-exon	FALSE	canonical	3	466	junction_2	22.365648262955	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGCTCTCCGTGCTTTC	NA	False	NA	-6	True	AATAAA	-14	NA	26727446	26724569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26725625_26725958_26726179_26726547_26726694_26726930
ENSMUSG00000024191.16_0	chr17	+	1079	6	FSM	ENSMUSG00000024191.16	ENSMUST00000015725.16	1098	6	17	2	1	-1	multi-exon	FALSE	canonical	3	79	junction_1	9.09945053286186	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGAGTGGTAAATGCTTA	2011	False	NA	13	True	AATAAA	-13	NA	27000056	27011493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
ENSMUSG00000024191.16_1	chr17	+	2997	4	ISM	ENSMUSG00000024191.16	ENSMUST00000126505.3	1139	7	3513	2	-1764	-1	3prime_fragment	FALSE	canonical	3	87	junction_2	6.12825877028341	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGAGTGGTAAATGCTTA	5520	False	NA	13	True	AATAAA	-13	NA	27003565	27011493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27005763_27008668_27008771_27009899_27010019_27010914
ENSMUSG00000024191.16_4	chr17	+	6843	1	NIC	ENSMUSG00000024191.16	novel	1098	6	NA	NA	1	1988	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGAAGGAAGGAAGGAAG	2008	False	NA	NA	False	NA	NA	NA	27000053	27006896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_27000100_27006900
ENSMUSG00000024191.16_5	chr17	+	3346	5	NIC	ENSMUSG00000024191.16	novel	1139	7	NA	NA	1	-5	intron_retention	FALSE	canonical	3	87	junction_3	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAATAGAGTGGTAAATG	2008	False	NA	9	True	AATAAA	-9	NA	27000053	27011489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
ENSMUSG00000024193.9_10	chr17	+	2573	14	FSM	ENSMUSG00000024193.9	ENSMUST00000237189.2	2526	14	-48	1	-30	-1	multi-exon	TRUE	canonical	3	8	junction_1	5.73992557113158	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTAGGCATGAGTCATTT	NA	False	NA	2	True	AATAAA	-12	NA	27152074	27156862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27152509_27153167_27153343_27153427_27153510_27153604_27153701_27154027_27154129_27154222_27154372_27154513_27154610_27154723_27154793_27154892_27155017_27155097_27155166_27155260_27155655_27155744_27155840_27156027_27156109_27156253
ENSMUSG00000024193.9_16	chr17	+	987	4	ISM	ENSMUSG00000024193.9	ENSMUST00000237189.2	2526	14	3331	0	3020	0	3prime_fragment	FALSE	canonical	3	17	junction_1	6.12825877028341	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGGCATGAGTCATTTT	NA	False	NA	3	True	AATAAA	-13	NA	27155453	27156863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27155655_27155744_27155840_27156027_27156109_27156253
ENSMUSG00000024193.9_18	chr17	+	408	1	ISM	ENSMUSG00000024193.9	ENSMUST00000073724.7	2522	15	4430	19	4022	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGGCATGAGTCATTTT	NA	False	NA	3	True	AATAAA	-13	NA	27156455	27156863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27156500_27156900
ENSMUSG00000024193.9_8	chr17	+	2447	15	FSM	ENSMUSG00000024193.9	ENSMUST00000073724.7	2522	15	51	24	-28	-5	multi-exon	FALSE	canonical	2	7	junction_11	6.30718734816859	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTAGTAGGCATGAGTC	NA	False	NA	-2	True	AATAAA	-8	NA	27152076	27156858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27152509_27153167_27153343_27153427_27153510_27153604_27153701_27154027_27154129_27154222_27154372_27154513_27154610_27154723_27154793_27154892_27155017_27155097_27155166_27155260_27155366_27155485_27155655_27155744_27155840_27156027_27156109_27156253
ENSMUSG00000024194.17_1	chr17	-	646	7	FSM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	94	1	-11	0	multi-exon	FALSE	canonical	3	300	junction_6	250.570959122472	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9346	False	NA	-18	True	AATAAA	-17	NA	27158449	27156946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290_27158343_27158424
ENSMUSG00000024194.17_11	chr17	-	602	6	FSM	ENSMUSG00000024194.17	ENSMUST00000114935.9	662	6	60	0	-19	0	multi-exon	FALSE	canonical	3	227	junction_5	278.895392575783	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9338	False	NA	-18	True	AATAAA	-17	NA	27158457	27156946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158424
ENSMUSG00000024194.17_17	chr17	-	791	5	FSM	ENSMUSG00000024194.17	ENSMUST00000237609.2	785	5	-6	0	5	0	multi-exon	FALSE	canonical	3	511	junction_4	189.078026221981	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9392	False	NA	-18	True	AATAAA	-17	NA	27158403	27156946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290
ENSMUSG00000024194.17_2	chr17	-	674	6	ISM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	148	1	2	0	3prime_fragment	FALSE	canonical	3	511	junction_5	169.834507683215	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9400	False	NA	-18	True	AATAAA	-17	NA	27158395	27156946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290
ENSMUSG00000024194.17_38	chr17	-	703	5	NIC	ENSMUSG00000024194.17	novel	662	6	NA	NA	-11	0	intron_retention	FALSE	canonical	3	227	junction_4	311.485954739536	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9346	False	NA	-18	True	AATAAA	-17	NA	27158449	27156946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158424
ENSMUSG00000024194.17_5	chr17	-	769	5	ISM	ENSMUSG00000024194.17	ENSMUST00000236623.2	622	6	99	-125	-87	0	3prime_fragment	FALSE	canonical	3	797	junction_3	67.913547985656	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9529	False	NA	-18	True	AATAAA	-17	NA	27158266	27156946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857
ENSMUSG00000024194.17_8	chr17	-	862	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236326.2	937	6	76	-1	-5	1	multi-exon	FALSE	canonical	3	300	junction_5	250.477144665936	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGCCTTTTCTCTGTGAC	9352	False	NA	-20	True	AATAAA	-15	NA	27158443	27156948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158343_27158424
ENSMUSG00000024197.11_0	chr17	-	2150	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	2	1493	2	-1493	multi-exon	FALSE	canonical	3	548	junction_7	40.8821102534533	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCCAAGTGGATGGTGT	NA	False	NA	-12	True	AATAAA	-14	NA	56597509	56585968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
ENSMUSG00000024197.11_1	chr17	-	529	1	ISM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	11016	1491	11016	-1491	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCAAGTGGATGGTGTAT	NA	False	NA	-10	True	AATAAA	-16	NA	56586495	56585966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56586000_56586500
ENSMUSG00000024197.11_10	chr17	-	1593	4	ISM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	6217	1493	6217	-1493	3prime_fragment	FALSE	canonical	3	629	junction_3	16.9705627484771	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCCAAGTGGATGGTGT	NA	False	NA	-12	True	AATAAA	-14	NA	56591294	56585968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132
ENSMUSG00000024197.11_4	chr17	-	2197	7	ISM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	2534	1491	2534	-1491	3prime_fragment	TRUE	canonical	3	572	junction_5	31.4536696322279	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCAAGTGGATGGTGTAT	NA	False	NA	-10	True	AATAAA	-16	NA	56594977	56585966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793
ENSMUSG00000024201.13_11	chr17	+	4564	23	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	46	junction_12	29.4305457780414	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGGTCATGGCTGTGT	4900	False	NA	11	True	ATTAAA	-27	NA	56633064	56709863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701789_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ENSMUSG00000024201.13_17	chr17	+	4673	24	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	40.7135319325118	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGGTCATGGCTGTGT	4900	False	NA	11	True	ATTAAA	-27	NA	56633064	56709863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_56633230_56651333_56651443_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701789_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ENSMUSG00000024201.13_2	chr17	+	4584	23	FSM	ENSMUSG00000024201.13	ENSMUST00000025036.11	4577	23	-8	1	4	-1	multi-exon	FALSE	canonical	3	94	junction_12	23.0595707170123	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGGTCATGGCTGTGT	4901	False	NA	11	True	ATTAAA	-27	NA	56633065	56709863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701768_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ENSMUSG00000024201.13_30	chr17	+	4561	23	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	2	17	junction_13	35.4617708255333	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCCACCTGGTCATGGCT	4902	False	NA	7	True	ATTAAA	-23	NA	56633066	56709859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701768_56701890_56703221_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ENSMUSG00000024201.13_6	chr17	+	4693	24	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	37.0128981759057	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCTGGTCATGGCTGTG	4900	False	NA	10	True	ATTAAA	-26	NA	56633064	56709862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_56633230_56651333_56651443_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701768_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
ENSMUSG00000024205.8_0	chr11	+	348	1	FSM	ENSMUSG00000024205.8	ENSMUST00000136893.3	311	1	-8	-29	-8	29	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	76492136	76492484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_76492100_76492500
ENSMUSG00000024206.16_0	chr17	-	3424	18	FSM	ENSMUSG00000024206.16	ENSMUST00000002444.15	3350	18	-77	3	-72	-3	multi-exon	FALSE	canonical	3	81	junction_12	62.8192882463543	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATACCTGGTGTCCGTGT	NA	False	NA	-7	True	NA	NA	NA	57138085	57082902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57106249_57106325_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
ENSMUSG00000024206.16_14	chr17	-	3330	17	NIC	ENSMUSG00000024206.16	novel	3350	18	NA	NA	-70	-3	combination_of_known_junctions	FALSE	canonical	3	62	junction_16	78.7249960304858	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATACCTGGTGTCCGTGT	NA	False	NA	-7	True	NA	NA	NA	57138083	57082902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57106249_57106325_57110477_57110740_57111325_57111397_57112357_57112448_57137882
ENSMUSG00000024206.16_3	chr17	-	3349	17	FSM	ENSMUSG00000024206.16	ENSMUST00000086801.7	3283	17	-72	6	-72	-3	multi-exon	FALSE	canonical	3	178	junction_12	29.2883695986991	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATACCTGGTGTCCGTGT	NA	False	NA	-7	True	NA	NA	NA	57138085	57082902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
ENSMUSG00000024206.16_9	chr17	-	3251	16	NIC	ENSMUSG00000024206.16	novel	3283	17	NA	NA	-66	-3	combination_of_known_junctions	TRUE	canonical	3	62	junction_15	59.2522292126353	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATACCTGGTGTCCGTGT	NA	False	NA	-7	True	NA	NA	NA	57138079	57082902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57137882
ENSMUSG00000024207.9_0	chr17	-	2447	14	ISM	ENSMUSG00000024207.9	ENSMUST00000043062.5	2609	15	1460	1	1460	-1	3prime_fragment	TRUE	canonical	1	2	junction_3	2.01767339209292	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCTTGAGTCTTCATTC	NA	False	NA	NA	False	NA	NA	NA	57179987	57150103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_57150378_57152403_57152514_57153092_57153340_57153521_57153662_57154610_57154829_57156714_57156949_57157034_57157217_57160736_57160914_57163878_57164029_57168538_57168623_57169870_57169992_57171459_57171549_57175225_57175456_57179796
ENSMUSG00000024208.17_0	chr17	-	464	4	FSM	ENSMUSG00000024208.17	ENSMUST00000025045.15	500	4	30	6	16	-1	multi-exon	TRUE	canonical	3	2713	junction_1	153.559977424675	466	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTCCTGGTTTGGAACTC	1977	False	NA	-4	True	AATAAA	-18	NA	27352860	27341642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27341815_27344120_27344191_27344857_27344933_27352713
ENSMUSG00000024209.10_0	chr17	+	2291	12	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1754	5	1728	-5	3prime_fragment	FALSE	canonical	3	15	junction_6	15.5260378474249	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGATGGCTCGCACCCC	NA	False	NA	11	True	ATTAAA	-11	NA	57184230	57195899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
ENSMUSG00000024209.10_18	chr17	+	870	4	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	9272	5	9246	-5	3prime_fragment	FALSE	canonical	3	55	junction_1	8.99382504215469	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGATGGCTCGCACCCC	NA	False	NA	11	True	ATTAAA	-11	NA	57191748	57195899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_57191969_57192083_57192224_57193440_57193688_57195636
ENSMUSG00000024209.10_2	chr17	+	2680	11	NIC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	1668	-5	intron_retention	TRUE	canonical	3	25	junction_5	13.5606047062806	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGATGGCTCGCACCCC	NA	False	NA	11	True	ATTAAA	-11	NA	57184170	57195899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
ENSMUSG00000024209.10_23	chr17	+	2435	10	NIC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	1695	-5	intron_retention	FALSE	canonical	3	8	junction_7	17.8788791871206	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGATGGCTCGCACCCC	NA	False	NA	11	True	ATTAAA	-11	NA	57184197	57195899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57190498_57190626_57190861_57192083_57192224_57193440_57193688_57195636
ENSMUSG00000024209.10_5	chr17	+	1953	10	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1741	3522	1715	-3522	internal_fragment	FALSE	canonical	3	15	junction_6	11.0699236617306	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGAGGACCTAAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	57184217	57192382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083
ENSMUSG00000024209.10_9	chr17	+	2899	11	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1732	1368	1706	-1368	internal_fragment	FALSE	canonical	3	15	junction_6	15.5244967712322	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57184208	57194536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440
ENSMUSG00000024212.10_0	chr17	-	3679	12	FSM	ENSMUSG00000024212.10	ENSMUST00000025053.10	3636	12	-47	4	-47	-4	multi-exon	FALSE	canonical	3	105	junction_9	16.3510052260045	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGTGGGTGGCCTGCCTT	5987	False	NA	-7	True	AATAAA	-11	NA	57242462	57199614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57201591_57201666_57201739_57201830_57201903_57201998_57202099_57203208_57203318_57204379_57204468_57206768_57207297_57209562_57209689_57212711_57212856_57226899_57226983_57233991_57234173_57242262
ENSMUSG00000024212.10_1	chr17	-	3560	11	NIC	ENSMUSG00000024212.10	novel	3636	12	NA	NA	-51	-1	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	40.9921943789302	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGGTGGCCTGCCTTCAA	5983	False	NA	-4	True	AATAAA	-14	NA	57242466	57199611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_57201591_57201666_57201739_57201830_57201903_57201998_57202099_57203208_57203318_57204379_57204468_57206768_57207297_57212711_57212856_57226899_57226983_57233991_57234173_57242262
ENSMUSG00000024212.10_6	chr17	-	2542	7	ISM	ENSMUSG00000024212.10	ENSMUST00000025053.10	3636	12	35525	1	-3216	-1	3prime_fragment	FALSE	canonical	3	130	junction_3	10.4363148029688	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGGTGGCCTGCCTTCAA	8997	False	NA	-4	True	AATAAA	-14	NA	57206890	57199611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_57201591_57201666_57201739_57201830_57201903_57201998_57202099_57203208_57203318_57204379_57204468_57206768
ENSMUSG00000024213.15_0	chr17	-	2183	5	FSM	ENSMUSG00000024213.15	ENSMUST00000025050.13	2223	5	31	9	31	-4	multi-exon	FALSE	canonical	3	316	junction_4	16.1458198924675	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTTTGCTCTTTGTT	NA	False	NA	-27	True	AATAAA	-14	NA	27842438	27798364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27799929_27800981_27801067_27802185_27802231_27815697_27815809_27842060
ENSMUSG00000024213.15_1	chr17	-	1219	1	ISM	ENSMUSG00000024213.15	ENSMUST00000025050.13	2223	5	42885	10	2709	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAAGCTTTTGCTCTTTGT	NA	False	NA	-28	True	AATAAA	-13	NA	27799584	27798365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27798400_27799600
ENSMUSG00000024213.15_3	chr17	-	1751	6	NIC	ENSMUSG00000024213.15	novel	1523	6	NA	NA	42	-4	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	132.091786270002	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTTTGCTCTTTGTT	NA	False	NA	-27	True	AATAAA	-14	NA	27842427	27798364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_27799329_27799749_27799929_27800981_27801067_27802185_27802231_27815697_27815809_27842060
ENSMUSG00000024217.11_1	chr17	+	728	6	FSM	ENSMUSG00000024217.11	ENSMUST00000071006.9	758	6	30	0	-18	0	multi-exon	FALSE	canonical	3	1664	junction_1	167.935225607971	527	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGTCCCTGTCCCTT	NA	False	NA	18	True	AATAAA	-20	NA	28059090	28070939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
ENSMUSG00000024218.14_0	chr17	-	2166	5	FSM	ENSMUSG00000024218.14	ENSMUST00000025057.5	1220	5	-946	0	469	0	multi-exon	FALSE	canonical	3	141	junction_3	9.9373034571759	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACAGGGTTTCTCTGTGT	NA	False	NA	-9	True	AATAAA	-19	NA	28127644	28120101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474
ENSMUSG00000024218.14_12	chr17	-	450	1	ISM	ENSMUSG00000024218.14	ENSMUST00000114848.8	2207	6	7656	15	1685	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTTCAAGACAGGGTT	NA	False	NA	-18	True	AATAAA	-10	NA	28120560	28120110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_28120100_28120600
ENSMUSG00000024218.14_13	chr17	-	2099	6	NIC	ENSMUSG00000024218.14	novel	2207	6	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_5	59.2702286143727	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACAGGGTTTCTCTGTGT	NA	False	NA	-9	True	AATAAA	-19	NA	28128103	28120101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474_28127218_28127743
ENSMUSG00000024218.14_3	chr17	-	2191	6	NNC	ENSMUSG00000024218.14	novel	3457	6	NA	NA	28	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	61.2483469164679	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACAGGGTTTCTCTGTG	NA	False	NA	-10	True	AATAAA	-18	NA	28128188	28120102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474_28127226_28127743
ENSMUSG00000024219.17_1	chr17	+	5561	24	FSM	ENSMUSG00000024219.17	ENSMUST00000233525.2	5717	24	-7	163	-7	1	multi-exon	FALSE	canonical	3	31	junction_22	7.82125454670221	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTGTTTGAATTATAAA	4259	False	NA	15	True	CATAAA	-16	NA	28128299	28281574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28128621_28193878_28193960_28195534_28195692_28204039_28204337_28205225_28205302_28205524_28205627_28205718_28205821_28207693_28207891_28210281_28210375_28214907_28215029_28226822_28227407_28257053_28257121_28261543_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28278267_28278366_28279535
ENSMUSG00000024219.17_13	chr17	+	6719	23	ISM	ENSMUSG00000024219.17	ENSMUST00000233525.2	5717	24	4	164	4	0	intron_retention	FALSE	canonical	3	31	junction_22	7.69686530590149	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATTTTGTTTGAATTATAA	4270	False	NA	14	True	CATAAA	-15	NA	28128310	28281573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28128621_28193878_28193960_28195534_28195692_28204039_28204337_28205225_28205302_28205524_28205627_28205718_28205821_28207693_28207891_28210281_28210375_28214907_28215029_28226822_28227407_28257053_28257121_28261543_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28278267
ENSMUSG00000024219.17_2	chr17	+	5721	26	NIC	ENSMUSG00000024219.17	novel	6846	25	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_3	15.1100496359211	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATTTTGTTTGAATTATAA	4260	False	NA	14	True	CATAAA	-15	NA	28128300	28281573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28128621_28193878_28193960_28195534_28195692_28197400_28197464_28204039_28204337_28205225_28205302_28205524_28205627_28205718_28205821_28207693_28207891_28210281_28210375_28214907_28215029_28226822_28227407_28257053_28257121_28261543_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28277721_28277821_28278267_28278366_28279535
ENSMUSG00000024219.17_30	chr17	+	3966	14	FSM	ENSMUSG00000024219.17	ENSMUST00000139173.3	4517	14	549	2	549	0	multi-exon	FALSE	canonical	3	31	junction_12	9.06061115798559	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGATTTTGTTTGAATTAT	4652	False	NA	12	True	CATAAA	-13	NA	28226867	28281571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28227407_28257053_28257121_28261543_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28278267_28278366_28279535
ENSMUSG00000024219.17_4	chr17	+	1356	7	ISM	ENSMUSG00000024219.17	ENSMUST00000088027.7	6838	24	13	75529	-3	10239	5prime_fragment	FALSE	canonical	3	39	junction_4	6.71854812358212	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTAATTCCAGCACTTGAA	4263	False	NA	NA	False	ATTAAA	-18	NA	28128303	28206044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28128621_28193878_28193960_28195534_28195692_28204039_28204337_28205225_28205302_28205524_28205627_28205718
ENSMUSG00000024219.17_42	chr17	+	2426	4	ISM	ENSMUSG00000024219.17	ENSMUST00000139173.3	4517	14	50001	0	-95	0	3prime_fragment	FALSE	canonical	3	31	junction_2	12.4721912892465	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATTTTGTTTGAATTATAA	4121	False	NA	14	True	CATAAA	-15	NA	28276319	28281573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28276439_28277263_28277435_28278267_28278366_28279535
ENSMUSG00000024219.17_45	chr17	+	1890	1	ISM	ENSMUSG00000024219.17	ENSMUST00000114842.9	5819	25	151404	176	3269	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATTTTGTTTGAATTATAA	7485	False	NA	14	True	CATAAA	-15	NA	28279683	28281573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28279700_28281600
ENSMUSG00000024219.17_47	chr17	+	5625	25	FSM	ENSMUSG00000024219.17	ENSMUST00000114842.9	5819	25	18	176	7	0	multi-exon	FALSE	canonical	2	10	junction_3	13.4574948139194	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATTTTGTTTGAATTATAA	4257	False	NA	14	True	CATAAA	-15	NA	28128297	28281573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28128621_28193878_28193960_28195534_28195692_28197400_28197464_28204039_28204337_28205225_28205302_28205524_28205627_28205718_28205821_28207693_28207891_28210281_28210375_28214907_28215029_28226822_28227407_28257053_28257121_28261543_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28278267_28278366_28279535
ENSMUSG00000024219.17_7	chr17	+	5639	25	NIC	ENSMUSG00000024219.17	novel	6846	25	NA	NA	14	1	combination_of_known_junctions	FALSE	canonical	3	18	junction_23	11.2395012740285	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTGTTTGAATTATAAA	4280	False	NA	15	True	CATAAA	-16	NA	28128320	28281574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28128621_28193878_28193960_28195534_28195692_28204039_28204337_28205225_28205302_28205524_28205627_28205718_28205821_28207693_28207891_28210281_28210375_28214907_28215029_28226822_28227407_28257053_28257121_28261543_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28277721_28277821_28278267_28278366_28279535
ENSMUSG00000024220.15_0	chr17	+	2715	14	NIC	ENSMUSG00000024220.15	novel	2864	14	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	23.9854492379845	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGGGCTCCTCCATCAT	NA	False	NA	2	True	AATAAA	-14	NA	28396139	28424858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28396390_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421088_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
ENSMUSG00000024220.15_1	chr17	+	2578	14	FSM	ENSMUSG00000024220.15	ENSMUST00000073534.10	2864	14	284	2	-5	0	multi-exon	FALSE	canonical	3	64	junction_10	10.6092512939298	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGGGCTCCTCCATCAT	NA	False	NA	2	True	AATAAA	-14	NA	28396386	28424858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28396500_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421088_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
ENSMUSG00000024220.15_12	chr17	+	2354	13	NIC	ENSMUSG00000024220.15	novel	2864	14	NA	NA	2	1	combination_of_known_splicesites	FALSE	canonical	3	11	junction_9	22.220486043289	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGGCTCCTCCATCATT	NA	False	NA	3	True	AATAAA	-15	NA	28396377	28424859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28396500_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421408_28421573_28422059_28422225_28423428_28423543_28424084
ENSMUSG00000024220.15_17	chr17	+	2447	13	ISM	ENSMUSG00000024220.15	ENSMUST00000233613.2	2491	14	3627	3	3627	-1	3prime_fragment	FALSE	canonical	3	64	junction_9	10.1417043275116	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGGCTCCTCCATCA	NA	False	NA	1	True	AATAAA	-13	NA	28408787	28424857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421088_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
ENSMUSG00000024220.15_3	chr17	+	2597	14	NIC	ENSMUSG00000024220.15	novel	2710	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	2	11	junction_4	21.8653761585803	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGGCTCCTCCATCATT	NA	False	NA	3	True	AATAAA	-15	NA	28396391	28424859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28396500_28408770_28408927_28413939_28414021_28414121_28414200_28416724_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421088_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
ENSMUSG00000024220.15_9	chr17	+	3248	13	NIC	ENSMUSG00000024220.15	novel	2710	15	NA	NA	0	1	intron_retention	FALSE	canonical	3	64	junction_9	9.71646655025489	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGGCTCCTCCATCATT	NA	False	NA	3	True	AATAAA	-15	NA	28396391	28424859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28396500_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
ENSMUSG00000024222.18_1	chr17	-	3474	11	FSM	ENSMUSG00000024222.18	ENSMUST00000079413.11	3543	11	58	11	2	0	multi-exon	FALSE	canonical	2	296	junction_7	83.3980815127063	1193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTGGTTTTTCATTGT	NA	False	NA	-22	True	AATAAA	-7	NA	28705065	28618078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28647325_28647441_28648194_28648338_28656965_28657111_28659901_28660028_28704925
ENSMUSG00000024222.18_3	chr17	-	1768	1	ISM	ENSMUSG00000024222.18	ENSMUST00000079413.11	3543	11	85283	5	17638	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTTCATTGTTCATGG	2650	False	NA	-16	True	AATAAA	-13	NA	28619840	28618072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_28618100_28619800
ENSMUSG00000024222.18_5	chr17	-	2930	7	NIC	ENSMUSG00000024222.18	novel	1414	7	NA	NA	-9	-2	combination_of_known_junctions	FALSE	canonical	3	57	junction_6	192.900377282046	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTTCATTGTTCATGG	NA	False	NA	-16	True	AATAAA	-13	NA	28637487	28618072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637368
ENSMUSG00000024227.15_0	chr17	-	1141	7	ISM	ENSMUSG00000024227.15	ENSMUST00000025064.14	4174	13	58886	4	-38994	-4	3prime_fragment	FALSE	canonical	0	0	junction_4	1.06718737290547	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTCACATTCTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	59239484	59185806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_59186173_59187601_59187738_59190899_59191087_59192854_59192898_59195002_59195161_59229563_59229743_59239412
ENSMUSG00000024228.13_1	chr17	-	3542	7	FSM	ENSMUSG00000024228.13	ENSMUST00000025065.12	4113	7	70	501	-34	-8	multi-exon	FALSE	canonical	3	48	junction_4	5.17740818900302	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAAATGTATTTTGTTT	NA	False	NA	-21	True	AATAAA	-17	NA	59320297	59307113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_59309287_59310323_59310524_59313498_59313613_59314618_59314787_59316849_59317440_59318037_59318250_59320212
ENSMUSG00000024228.13_10	chr17	-	3164	5	ISM	ENSMUSG00000024228.13	ENSMUST00000025065.12	4113	7	3009	501	2905	-8	3prime_fragment	FALSE	canonical	3	48	junction_4	5.16599457994296	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAAATGTATTTTGTTT	NA	False	NA	-21	True	AATAAA	-17	NA	59317358	59307113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_59309287_59310323_59310524_59313498_59313613_59314618_59314787_59316849
ENSMUSG00000024228.13_8	chr17	-	1039	1	ISM	ENSMUSG00000024228.13	ENSMUST00000025065.12	4113	7	12214	502	2549	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAAATGTATTTTGTT	NA	False	NA	-22	True	AATAAA	-16	NA	59308153	59307114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_59307100_59308200
ENSMUSG00000024231.16_16	chr18	+	2816	21	FSM	ENSMUSG00000024231.16	ENSMUST00000162301.8	3828	21	20	992	-5	0	multi-exon	FALSE	canonical	3	782	junction_1	80.8420682565705	1393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	8	True	NA	72	True	ATTAAA	-28	NA	3383251	3435385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
ENSMUSG00000024231.16_2	chr18	+	2821	21	NIC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	34	0	combination_of_known_junctions	FALSE	canonical	3	200	junction_1	171.970666103263	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	-1	True	NA	72	True	ATTAAA	-28	NA	3383021	3435385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
ENSMUSG00000024232.3_1	chr18	+	1410	3	FSM	ENSMUSG00000024232.3	ENSMUST00000025075.3	5074	3	12	3652	12	-3652	multi-exon	FALSE	canonical	3	117	junction_2	19.5	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAATTTAGTGGTGTCTTT	4	True	NA	19	True	AATATA	-14	NA	3507934	3512752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_3508286_3511256_3511545_3511981
ENSMUSG00000024232.3_2	chr18	+	1004	2	ISM	ENSMUSG00000024232.3	ENSMUST00000025075.3	5074	3	3384	3657	3384	-3657	3prime_fragment	FALSE	canonical	3	117	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCGAAAATTTAGTGGTG	3298	False	NA	14	True	AATATA	-9	NA	3511306	3512747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_3511545_3511981
ENSMUSG00000024234.8_0	chr18	+	2090	9	FSM	ENSMUSG00000024234.8	ENSMUST00000025077.7	2651	9	15	546	3	-1	multi-exon	FALSE	canonical	3	181	junction_2	18.3711730708738	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTCTAGTATCTATTTTC	3	True	NA	17	True	AATAAA	-19	NA	4375606	4396784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUSG00000024234.8_1	chr18	+	2065	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234422.2	2626	9	17	544	9	-1	multi-exon	FALSE	canonical	3	50	junction_2	58.5340445809103	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTCTAGTATCTATTTTC	9	True	NA	17	True	AATAAA	-19	NA	4375612	4396784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_4375779_4379568_4379742_4380672_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUSG00000024234.8_2	chr18	+	2087	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234186.2	2110	9	22	1	10	-1	multi-exon	FALSE	canonical	3	50	junction_3	58.8005102018681	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTCTAGTATCTATTTTC	10	True	NA	17	True	AATAAA	-19	NA	4375613	4396784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383184_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUSG00000024234.8_29	chr18	+	3312	3	ISM	ENSMUSG00000024234.8	ENSMUST00000234924.2	1880	7	9263	546	9263	-1	3prime_fragment	FALSE	canonical	3	221	junction_2	2	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTCTAGTATCTATTTTC	NA	False	NA	17	True	AATAAA	-19	NA	4392508	4396784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_4395067_4395155_4395230_4396104
ENSMUSG00000024234.8_3	chr18	+	2069	9	NIC	ENSMUSG00000024234.8	novel	2110	9	NA	NA	9	-1	intron_retention	FALSE	canonical	3	50	junction_2	76.754376911027	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTCTAGTATCTATTTTC	9	True	NA	17	True	AATAAA	-19	NA	4375612	4396784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_4375779_4379568_4379742_4380672_4380888_4383184_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUSG00000024235.12_1	chr18	-	2492	8	FSM	ENSMUSG00000024235.12	ENSMUST00000025078.10	2569	8	58	19	0	-5	multi-exon	FALSE	canonical	2	4	junction_5	7.63450812336422	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGAGTATTTTGTCTTA	-4	True	NA	NA	False	AATAAA	-7	NA	4352957	4331345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_4332437_4333817_4334065_4334616_4334770_4339496_4339604_4340546_4340809_4343021_4343190_4348980_4349339_4352851
ENSMUSG00000024235.12_4	chr18	-	470	2	FSM	ENSMUSG00000024235.12	ENSMUST00000172805.2	2048	2	66	1512	8	-1512	multi-exon	FALSE	canonical	3	28	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTTGAGTGCTGTGTGC	4	True	NA	NA	False	ATTAAA	-19	NA	4352949	4348966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_4349339_4352851
ENSMUSG00000024236.19_3	chr18	+	6689	34	NIC	ENSMUSG00000024236.19	novel	7907	38	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	17.6671084720473	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTCATTGATCAGTTCA	-7	True	NA	9	True	AATAAA	-15	NA	4920540	5119286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_4920875_5037107_5037166_5040147_5040240_5046588_5046647_5046763_5046916_5048884_5049495_5058124_5058160_5058712_5058775_5059229_5059370_5062161_5062406_5063193_5063771_5064470_5064691_5073880_5074005_5082782_5082931_5086534_5086625_5086709_5086797_5088636_5088815_5090786_5090960_5092844_5093001_5094537_5094675_5095171_5095320_5095435_5095582_5097426_5097603_5098907_5099053_5099433_5099711_5103574_5103727_5105765_5105872_5106663_5106872_5108574_5108709_5114530_5114687_5115977_5116122_5116972_5117098_5118099_5118256_5118345
ENSMUSG00000024236.19_32	chr18	+	5740	29	ISM	ENSMUSG00000024236.19	ENSMUST00000143254.8	6594	36	127347	80	2498	1	3prime_fragment	FALSE	canonical	3	62	junction_11	15.5361658390863	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCATTGTAAACATTACAC	NA	False	NA	3	True	AATAAA	-19	NA	5049072	5119219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_5049495_5058124_5058160_5058712_5058775_5059229_5059370_5062161_5062406_5063193_5063771_5064470_5064691_5073880_5074005_5082782_5082931_5086534_5086625_5086709_5086797_5088636_5088815_5090786_5090960_5092844_5093001_5094537_5094675_5095171_5095320_5095435_5095582_5097426_5097603_5098907_5099053_5099433_5099711_5103574_5103727_5105765_5105872_5106663_5106872_5108574_5108709_5114530_5114687_5115977_5116122_5116972_5117098_5118099_5118256_5118345
ENSMUSG00000024236.19_47	chr18	+	2633	12	ISM	ENSMUSG00000024236.19	ENSMUST00000025079.16	7433	35	50939	2	3133	-2	3prime_fragment	FALSE	canonical	3	84	junction_4	14.518156201947	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTCATTGATCAGTTCA	NA	False	NA	9	True	AATAAA	-15	NA	5097513	5119286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_5097603_5098907_5099053_5099433_5099711_5103574_5103727_5105765_5105872_5106663_5106872_5108574_5108709_5114530_5114687_5115977_5116122_5116972_5117098_5118099_5118256_5118345
ENSMUSG00000024236.19_49	chr18	+	2431	11	ISM	ENSMUSG00000024236.19	ENSMUST00000025079.16	7433	35	52379	69	4573	1	3prime_fragment	FALSE	canonical	3	84	junction_3	14.226735395023	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCATTGTAAACATTACAC	NA	False	NA	3	True	AATAAA	-19	NA	5098953	5119219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_5099053_5099433_5099711_5103574_5103727_5105765_5105872_5106663_5106872_5108574_5108709_5114530_5114687_5115977_5116122_5116972_5117098_5118099_5118256_5118345
ENSMUSG00000024236.19_5	chr18	+	6793	35	NIC	ENSMUSG00000024236.19	novel	7907	38	NA	NA	-4	-11	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	19.7669816616964	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAATCCCAATTCATTG	-12	True	NA	0	True	AATAAA	-6	NA	4920535	5119277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_4920875_4971089_4971198_5037107_5037166_5040147_5040240_5046588_5046647_5046763_5046916_5048884_5049495_5058124_5058160_5058712_5058775_5059229_5059370_5062161_5062406_5063193_5063771_5064470_5064691_5073880_5074005_5082782_5082931_5086534_5086625_5086709_5086797_5088636_5088815_5090786_5090960_5092844_5093001_5094537_5094675_5095171_5095320_5095435_5095582_5097426_5097603_5098907_5099053_5099433_5099711_5103574_5103727_5105765_5105872_5106663_5106872_5108574_5108709_5114530_5114687_5115977_5116122_5116972_5117098_5118099_5118256_5118345
ENSMUSG00000024238.16_0	chr18	+	5213	8	FSM	ENSMUSG00000024238.16	ENSMUST00000025081.13	5801	8	29	559	2	-559	multi-exon	FALSE	canonical	3	32	junction_5	9.45666809339164	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCTGCTGTCGTTCTTTG	7	True	NA	NA	False	AATAAA	-15	NA	5591892	5774908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_5591968_5705042_5705244_5748693_5748856_5758964_5759168_5761327_5761434_5766220_5768026_5770383_5770565_5772428
ENSMUSG00000024238.16_10	chr18	+	2106	1	ISM	ENSMUSG00000024238.16	ENSMUST00000025081.13	5801	8	180940	558	41723	-558	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTGCTGTCGTTCTTTGG	103	False	NA	NA	False	AATAAA	-16	NA	5772803	5774909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_5772800_5774900
ENSMUSG00000024238.16_5	chr18	+	2205	4	NIC	ENSMUSG00000024238.16	novel	266	3	NA	NA	2	706	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	1.69967317119759	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACTTGTGTTTGGGTTT	7	True	NA	NA	False	AGTAAA	-10	NA	5591892	5643579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_5591968_5633203_5633358_5641381_5641519_5641740
ENSMUSG00000024238.16_9	chr18	+	3533	3	ISM	ENSMUSG00000024238.16	ENSMUST00000177030.2	2768	7	36073	-2104	36073	-559	3prime_fragment	FALSE	canonical	3	53	junction_1	5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCTGCTGTCGTTCTTTG	NA	False	NA	NA	False	AATAAA	-15	NA	5767153	5774908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_5768026_5770383_5770565_5772428
ENSMUSG00000024240.14_0	chr18	-	3954	14	FSM	ENSMUSG00000024240.14	ENSMUST00000028100.13	3965	14	4	7	4	-7	multi-exon	FALSE	canonical	3	46	junction_13	6.05888266692776	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACTAACGTGCAGTGGT	-14	True	NA	-8	True	AATAAA	-20	NA	6490852	6435959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6490462
ENSMUSG00000024240.14_1	chr18	-	2283	5	ISM	ENSMUSG00000024240.14	ENSMUST00000028100.13	3965	14	41651	1	-7311	-1	3prime_fragment	FALSE	canonical	3	51	junction_3	5.53962995154008	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGCAGTGGTCTTTGC	NA	False	NA	-2	True	AATAAA	-26	NA	6449205	6435953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904
ENSMUSG00000024240.14_30	chr18	-	825	2	FSM	ENSMUSG00000024240.14	ENSMUST00000050542.6	565	2	6	-266	6	266	multi-exon	FALSE	canonical	3	18	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTTGTCTTTTTGTTT	-12	True	NA	NA	False	ATTAAA	-15	NA	6490850	6488893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_6489331_6490462
ENSMUSG00000024240.14_5	chr18	-	3802	14	FSM	ENSMUSG00000024240.14	ENSMUST00000115870.9	3817	14	8	7	8	-5	multi-exon	FALSE	canonical	1	5	junction_13	15.1118120655772	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAACGTGCAGTGGTCT	-3	True	NA	-6	True	AATAAA	-22	NA	6516100	6435957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6515864
ENSMUSG00000024240.14_6	chr18	-	1284	1	ISM	ENSMUSG00000024240.14	ENSMUST00000115870.9	3817	14	78867	7	4653	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAACGTGCAGTGGTCT	NA	False	NA	-6	True	AATAAA	-22	NA	6437241	6435957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_6436000_6437200
ENSMUSG00000024241.8_0	chr17	-	5536	22	FSM	ENSMUSG00000024241.8	ENSMUST00000068714.7	8436	22	-457	3357	27	-3357	multi-exon	FALSE	canonical	3	87	junction_5	16.1956574342597	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAGAAAATGGTTGATTC	NA	False	NA	NA	False	AATAAA	-42	NA	80787855	80704536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80706102_80707169_80707289_80714119_80714388_80715674_80715792_80715996_80716170_80721027_80721146_80722371_80722535_80726437_80726558_80727691_80727915_80730110_80730215_80730544_80730668_80731558_80731641_80740925_80741582_80742323_80742452_80752858_80752958_80753030_80753142_80756686_80756831_80759409_80759620_80761184_80761350_80762480_80762613_80767350_80767477_80787265
ENSMUSG00000024241.8_2	chr17	-	3604	1	ISM	ENSMUSG00000024241.8	ENSMUST00000068714.7	8436	22	82338	277	82338	-277	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATAGCCTATAAGTGTG	NA	False	NA	-11	True	AATAAA	-11	NA	80705060	80701456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_80701500_80705100
ENSMUSG00000024241.8_3	chr17	-	3479	13	ISM	ENSMUSG00000024241.8	ENSMUST00000068714.7	8436	22	46173	3353	46173	-3353	3prime_fragment	FALSE	canonical	3	87	junction_5	16.3220624377626	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAATGGTTGATTCTTAT	NA	False	NA	NA	False	ATTAAA	-12	NA	80741225	80704532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_80706102_80707169_80707289_80714119_80714388_80715674_80715792_80715996_80716170_80721027_80721146_80722371_80722535_80726437_80726558_80727691_80727915_80730110_80730215_80730544_80730668_80731558_80731641_80740925
ENSMUSG00000024242.16_15	chr17	-	4142	32	NIC	ENSMUSG00000024242.16	novel	4220	34	NA	NA	-43	-4	combination_of_known_splicesites	TRUE	canonical	3	18	junction_16	55.8979298721861	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGCTGTTGCGTAGTTG	NA	False	NA	-8	True	AATAAA	-11	NA	81035565	80887949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925985_80926025_80931484_80931544_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222
ENSMUSG00000024242.16_5	chr17	-	4197	33	FSM	ENSMUSG00000024242.16	ENSMUST00000234133.2	4088	33	-113	4	-44	-4	multi-exon	FALSE	canonical	3	111	junction_19	35.3232837516559	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGCTGTTGCGTAGTTG	NA	False	NA	-8	True	AATAAA	-11	NA	81035566	80887949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925722_80925777_80925985_80926025_80931484_80931544_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222
ENSMUSG00000024242.16_7	chr17	-	4259	34	FSM	ENSMUSG00000024242.16	ENSMUST00000025089.9	4220	34	-43	4	-43	-4	multi-exon	FALSE	canonical	3	139	junction_19	37.8671982269756	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGCTGTTGCGTAGTTG	NA	False	NA	-8	True	AATAAA	-11	NA	81035565	80887949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925722_80925777_80925985_80926025_80931484_80931544_80936714_80936778_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222
ENSMUSG00000024245.5_0	chr17	+	1753	4	FSM	ENSMUSG00000024245.5	ENSMUST00000025092.5	1696	4	-65	8	-65	-8	multi-exon	FALSE	canonical	2	2	junction_2	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTAGCTGTGCCTTTT	NA	False	NA	14	True	ATTAAA	-15	NA	81251995	81309237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_81252518_81293608_81293723_81297133_81297272_81308258
ENSMUSG00000024246.10_1	chr17	-	1830	10	FSM	ENSMUSG00000024246.10	ENSMUST00000025093.6	1833	10	-8	11	7	-11	multi-exon	FALSE	canonical	3	99	junction_3	16.3940669785982	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTAACCTATAATTTG	8156	False	NA	NA	False	ATTAAA	-11	NA	81372504	81333771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
ENSMUSG00000024246.10_2	chr17	-	1846	10	NNC	ENSMUSG00000024246.10	novel	2239	11	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	38.2954724461854	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTATAATTTGCTTATAG	8159	False	NA	NA	False	ATTAAA	-18	NA	81372501	81333764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_81334400_81340060_81340170_81344926_81345042_81345521_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
ENSMUSG00000024246.10_6	chr17	-	2241	11	FSM	ENSMUSG00000024246.10	ENSMUST00000234801.2	2239	11	-1	-1	-1	1	multi-exon	FALSE	canonical	2	2	junction_1	48.9983673197383	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTTGCTTATAGACTCT	8148	False	NA	NA	False	ATTAAA	-23	NA	81372512	81333759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_81334400_81338052_81338444_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
ENSMUSG00000024248.15_1	chr17	-	1062	3	FSM	ENSMUSG00000024248.15	ENSMUST00000025095.9	1076	3	0	14	0	2	multi-exon	TRUE	canonical	0	0	junction_1	644	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATGTTTTTAGTTTGT	9947	False	NA	-37	True	AATAAA	-9	NA	83821759	83809360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_83810167_83811528_83811658_83821632
ENSMUSG00000024248.15_2	chr17	-	363	1	ISM	ENSMUSG00000024248.15	ENSMUST00000025095.9	1076	3	12038	12	2214	4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTTTTTAGTTTGTTT	NA	False	NA	-35	True	AATAAA	-11	NA	83809721	83809358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_83809400_83809700
ENSMUSG00000024251.11_0	chr17	-	6482	38	FSM	ENSMUSG00000024251.11	ENSMUST00000047524.10	7784	38	-90	1392	-1	69	multi-exon	FALSE	canonical	2	39	junction_31	15.529655412283	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGGGTATGTTTGATT	NA	False	NA	-48	True	TATAAA	-16	NA	84773634	84498895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_84499760_84500727_84500898_84530101_84530234_84533315_84533470_84536564_84536638_84537169_84537289_84538218_84538593_84559761_84559857_84580133_84580253_84617314_84617484_84641453_84641586_84644220_84644311_84693938_84694031_84700787_84700911_84702490_84702605_84705622_84705756_84723705_84723816_84730459_84730618_84733566_84733726_84736113_84736251_84736496_84736633_84739606_84739815_84742983_84743139_84744022_84744147_84747422_84747546_84748366_84748523_84749088_84749241_84751245_84751938_84753932_84754154_84755372_84755468_84759136_84759325_84762036_84762086_84762299_84762333_84762446_84762596_84765267_84765399_84766233_84766329_84771784_84771930_84773521
ENSMUSG00000024251.11_15	chr17	-	6435	38	NNC	ENSMUSG00000024251.11	novel	7784	38	NA	NA	-1	69	at_least_one_novel_splicesite	FALSE	canonical	2	26	junction_37	16.4770908096234	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGGGTATGTTTGATT	NA	False	NA	-48	True	TATAAA	-16	NA	84773634	84498895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_84499760_84500727_84500898_84530101_84530234_84533315_84533470_84536564_84536638_84537169_84537289_84538218_84538593_84559761_84559857_84580133_84580253_84617314_84617484_84641453_84641586_84644220_84644311_84693938_84694031_84700787_84700911_84702490_84702605_84705622_84705756_84723705_84723816_84730459_84730618_84733566_84733726_84736113_84736251_84736496_84736633_84739606_84739815_84742983_84743139_84744022_84744147_84747422_84747546_84748366_84748523_84749088_84749241_84751245_84751938_84753932_84754154_84755372_84755468_84759136_84759325_84762036_84762086_84762299_84762333_84762446_84762596_84765267_84765399_84766233_84766329_84771784_84771883_84773521
ENSMUSG00000024251.11_19	chr17	-	4917	28	ISM	ENSMUSG00000024251.11	ENSMUST00000047524.10	7784	38	21956	1389	-8472	72	3prime_fragment	TRUE	canonical	3	46	junction_12	14.8191660276761	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGTATGTTTGATTCTG	NA	False	NA	-45	True	TATAAA	-19	NA	84751588	84498892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_84499760_84500727_84500898_84530101_84530234_84533315_84533470_84536564_84536638_84537169_84537289_84538218_84538593_84559761_84559857_84580133_84580253_84617314_84617484_84641453_84641586_84644220_84644311_84693938_84694031_84700787_84700911_84702490_84702605_84705622_84705756_84723705_84723816_84730459_84730618_84733566_84733726_84736113_84736251_84736496_84736633_84739606_84739815_84742983_84743139_84744022_84744147_84747422_84747546_84748366_84748523_84749088_84749241_84751245
ENSMUSG00000024251.11_2	chr17	-	2590	13	NNC	ENSMUSG00000024251.11	novel	2556	13	NA	NA	13770	69	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	23.3789732214417	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGGGTATGTTTGATT	NA	False	NA	-48	True	TATAAA	-16	NA	84662438	84498895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_84499760_84500727_84500898_84530101_84530234_84533315_84533470_84536564_84536638_84537169_84537289_84538218_84538593_84559761_84559857_84580133_84580253_84617314_84617484_84641453_84641586_84644220_84644311_84662339
ENSMUSG00000024251.11_5	chr17	-	1838	1	ISM	ENSMUSG00000024251.11	ENSMUST00000047524.10	7784	38	274201	2	37945	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAACCATCTCACATTG	NA	False	NA	-41	True	AATAAA	-15	NA	84499343	84497505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_84497500_84499300
ENSMUSG00000024251.11_52	chr17	-	176	1	ISM	ENSMUSG00000024251.11	ENSMUST00000234313.2	2397	11	22657	1	-7860	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84750976	84750800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_84750800_84751000
ENSMUSG00000024253.10_0	chr17	+	1356	13	FSM	ENSMUSG00000024253.10	ENSMUST00000025101.10	1354	13	-9	7	-9	-7	multi-exon	FALSE	canonical	3	61	junction_6	7.6412622575651	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTGCAACATCTAAGTAT	NA	False	NA	9	True	AATAAA	-17	NA	84933914	84963009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_84934005_84935712_84935831_84939063_84939099_84940946_84941017_84943659_84943749_84950299_84950487_84951532_84951602_84952146_84952225_84954672_84954750_84955073_84955145_84956643_84956742_84957136_84957230_84962728
ENSMUSG00000024258.5_0	chr18	+	1030	4	FSM	ENSMUSG00000024258.5	ENSMUST00000025106.5	1015	4	-15	0	-15	0	multi-exon	FALSE	canonical	3	694	junction_1	16.2138486760204	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAATTGTATTTATTT	NA	False	NA	21	True	AATAAA	-20	NA	31922196	31929754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_31922298_31924892_31925074_31928340_31928437_31929102
ENSMUSG00000024258.5_3	chr18	+	930	3	FSM	ENSMUSG00000024258.5	ENSMUST00000234146.2	706	3	-12	-212	-11	0	multi-exon	FALSE	canonical	3	63	junction_2	315.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAATTGTATTTATTT	NA	False	NA	21	True	AATAAA	-20	NA	31922200	31929754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_31922298_31924892_31925074_31929102
ENSMUSG00000024259.10_0	chr18	-	2945	8	FSM	ENSMUSG00000024259.10	ENSMUST00000060396.7	4371	8	2	1424	2	-1424	multi-exon	FALSE	canonical	3	132	junction_7	28.1852472628023	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCTGTATTTTATGGTT	NA	False	NA	-20	True	AATAAA	-12	NA	31742953	31714644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_31716823_31727629_31727688_31730091_31730149_31733184_31733286_31735775_31735854_31738805_31738864_31740274_31740318_31742581
ENSMUSG00000024259.10_5	chr18	-	1562	1	ISM	ENSMUSG00000024259.10	ENSMUST00000060396.7	4371	8	26751	1422	26751	-1422	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTATTTTATGGTTAA	NA	False	NA	-18	True	AATAAA	-14	NA	31716204	31714642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_31714600_31716200
ENSMUSG00000024259.10_8	chr18	-	2836	7	NIC	ENSMUSG00000024259.10	novel	4371	8	NA	NA	7	-1427	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	63.5883025581138	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACATTCTGTATTTTATG	NA	False	NA	-23	True	AATAAA	-9	NA	31742948	31714647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_31716823_31727629_31727688_31730091_31730149_31735775_31735854_31738805_31738864_31740274_31740318_31742581
ENSMUSG00000024260.15_0	chr18	+	4037	21	FSM	ENSMUSG00000024260.15	ENSMUST00000235017.2	4030	21	-6	-1	-6	1	multi-exon	FALSE	canonical	3	64	junction_13	32.249767441022	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGAGCAGTTTGCCTCTT	6799	False	NA	9	True	AATAAA	-21	NA	31767417	31856115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_31767543_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815059_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
ENSMUSG00000024260.15_2	chr18	+	4034	21	FSM	ENSMUSG00000024260.15	ENSMUST00000025109.8	4015	21	-18	-1	-6	1	multi-exon	FALSE	canonical	3	84	junction_13	29.4439722184355	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGAGCAGTTTGCCTCTT	6799	False	NA	9	True	AATAAA	-21	NA	31767417	31856115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_31767543_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815062_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
ENSMUSG00000024260.15_28	chr18	+	3951	21	NIC	ENSMUSG00000024260.15	novel	400	3	NA	NA	5	1	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	41.2439086411557	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGAGCAGTTTGCCTCTT	7524	False	NA	9	True	AATAAA	-21	NA	31768142	31856115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_31768185_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815062_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
ENSMUSG00000024260.15_29	chr18	+	3966	21	NIC	ENSMUSG00000024260.15	novel	400	3	NA	NA	-7	1	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	43.0866568672948	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGAGCAGTTTGCCTCTT	7512	False	NA	9	True	AATAAA	-21	NA	31768130	31856115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_31768185_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815059_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
ENSMUSG00000024260.15_56	chr18	+	2540	3	ISM	ENSMUSG00000024260.15	ENSMUST00000025109.8	4015	21	79527	-1	78731	1	3prime_fragment	FALSE	canonical	3	176	junction_1	1.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGAGCAGTTTGCCTCTT	NA	False	NA	9	True	AATAAA	-21	NA	31846962	31856115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_31848498_31853709_31853824_31855224
ENSMUSG00000024260.15_58	chr18	+	675	1	Genic_Genomic	ENSMUSG00000024260.15	novel	NA	NA	NA	NA	87209	1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGAGCAGTTTGCCTCTT	NA	False	NA	9	True	AATAAA	-21	NA	31855440	31856115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_+_31855400_31856100
ENSMUSG00000024266.9_0	chr8	+	1973	10	NNC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_8	9.71571210608852	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTGCGTGTTGGGA	4271	False	NA	7	True	AATAAA	-12	NA	120339475	120343663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120342916_120343110_120343269_120343352
ENSMUSG00000024266.9_1	chr8	+	2167	9	NIC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	-8	1	intron_retention	FALSE	canonical	3	28	junction_5	5.50993421013355	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTCTGCGTGTTGGGAT	4273	False	NA	8	True	AATAAA	-13	NA	120339477	120343664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120343269_120343352
ENSMUSG00000024266.9_13	chr8	+	1870	2	NIC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	2225	1	intron_retention	FALSE	canonical	3	45	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTCTGCGTGTTGGGAT	6506	False	NA	8	True	AATAAA	-13	NA	120341710	120343664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_120343269_120343352
ENSMUSG00000024266.9_2	chr8	+	2272	8	NIC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	-21	1	intron_retention	FALSE	canonical	3	28	junction_5	5.55124549363584	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTCTGCGTGTTGGGAT	4260	False	NA	8	True	AATAAA	-13	NA	120339464	120343664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120343269_120343352
ENSMUSG00000024266.9_4	chr8	+	1934	10	FSM	ENSMUSG00000024266.9	ENSMUST00000098361.4	1926	10	-8	0	-8	0	multi-exon	FALSE	canonical	3	9	junction_8	9.71571210608852	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTGCGTGTTGGGA	4273	False	NA	7	True	AATAAA	-12	NA	120339477	120343663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120342916_120343147_120343269_120343352
ENSMUSG00000024266.9_6	chr8	+	2240	8	NIC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	-4	1	intron_retention	FALSE	canonical	3	29	junction_4	5.13888735674427	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTCTGCGTGTTGGGAT	4277	False	NA	8	True	AATAAA	-13	NA	120339481	120343664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342247_120342349_120342580_120342671_120343269_120343352
ENSMUSG00000024266.9_7	chr8	+	1667	6	NIC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	2073	1	intron_retention	FALSE	canonical	3	28	junction_2	6.71118469422501	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTCTGCGTGTTGGGAT	6354	False	NA	8	True	AATAAA	-13	NA	120341558	120343664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120343269_120343352
ENSMUSG00000024268.17_0	chr18	-	2304	2	ISM	ENSMUSG00000024268.17	ENSMUST00000115816.3	3995	13	266966	0	-120	0	3prime_fragment	FALSE	canonical	3	39	junction_1	0	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACCAAAAACCT	NA	False	NA	NA	False	AATAAA	-10	NA	25620074	25610688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_25612769_25619850
ENSMUSG00000024268.17_13	chr18	-	1021	6	ISM	ENSMUSG00000024268.17	ENSMUST00000223704.2	2492	13	248927	18121	-3817	7021	internal_fragment	FALSE	canonical	3	20	junction_1	5.17687164221791	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTGTCTGCATCCCAC	NA	False	NA	NA	False	AGTAAA	-14	NA	25638113	25630255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
ENSMUSG00000024268.17_4	chr18	-	1634	1	ISM	ENSMUSG00000024268.17	ENSMUST00000115816.3	3995	13	274711	7	3845	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAGTTTAAAAAAAAAACCA	NA	False	NA	NA	False	AATAAA	-3	NA	25612329	25610695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_25610700_25612300
ENSMUSG00000024268.17_5	chr18	-	3238	10	ISM	ENSMUSG00000024268.17	ENSMUST00000115816.3	3995	13	248921	0	-3823	0	3prime_fragment	FALSE	canonical	3	7	junction_2	9.7410927974683	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACCAAAAACCT	NA	False	NA	NA	False	AATAAA	-10	NA	25638119	25610688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_25612769_25619850_25620023_25624137_25624282_25629278_25629360_25630521_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
ENSMUSG00000024268.17_6	chr18	-	3185	10	ISM	ENSMUSG00000024268.17	ENSMUST00000223704.2	2492	13	248913	-1445	-3831	-1	3prime_fragment	FALSE	canonical	2	4	junction_2	10.3064165558269	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAACCAAAAACC	NA	False	NA	NA	False	AATAAA	-9	NA	25638127	25610689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_25612769_25619850_25620023_25624197_25624282_25629278_25629360_25630521_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
ENSMUSG00000024269.12_3	chr18	-	1286	7	FSM	ENSMUSG00000024269.12	ENSMUST00000115817.3	4159	7	297	2576	-16	-2576	multi-exon	FALSE	canonical	3	238	junction_5	17.5823459438406	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATCAGTATCGACTAGT	NA	False	NA	-7	True	AATAAA	-19	NA	25301767	25271669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_25272197_25273502_25273664_25274577_25274695_25282170_25282300_25284256_25284345_25291300_25291381_25301583
ENSMUSG00000024270.12_0	chr18	-	3868	10	FSM	ENSMUSG00000024270.12	ENSMUST00000070726.10	3882	10	9	5	9	-5	multi-exon	FALSE	canonical	3	75	junction_5	10.1153837126587	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCAGGCCTTGTTCTCTTT	NA	False	NA	-5	True	ATTAAA	-13	NA	24736865	24712942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_24714135_24715373_24715565_24717076_24717158_24718182_24718561_24722803_24722910_24729322_24729542_24730799_24730970_24732286_24732471_24733871_24734697_24736343
ENSMUSG00000024270.12_6	chr18	-	2808	9	ISM	ENSMUSG00000024270.12	ENSMUST00000070726.10	3882	10	2718	3	-1679	-3	3prime_fragment	FALSE	canonical	3	75	junction_5	10.7055768177151	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGCCTTGTTCTCTTTCT	NA	False	NA	-3	True	ATTAAA	-15	NA	24734156	24712940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_24714135_24715373_24715565_24717076_24717158_24718182_24718561_24722803_24722910_24729322_24729542_24730799_24730970_24732286_24732471_24733871
ENSMUSG00000024271.9_1	chr18	+	2764	22	FSM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	3	699	1	-2	multi-exon	FALSE	canonical	3	667	junction_5	86.0279973411599	1303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTTTGTCTGATTTTGC	NA	False	NA	88	True	TTTAAA	-8	NA	24737020	24771865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
ENSMUSG00000024273.9_0	chr18	+	1013	4	NIC	ENSMUSG00000024273.9	novel	1146	5	NA	NA	5	-39	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	89.4886709154976	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTAAGACAGTTTTTAT	349	False	NA	8	True	AATAAA	-18	NA	24603915	24610816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_24604038_24606006_24606207_24608581_24608782_24610325
ENSMUSG00000024273.9_1	chr18	+	1034	5	FSM	ENSMUSG00000024273.9	ENSMUST00000097646.5	1065	5	-8	39	7	-39	multi-exon	FALSE	canonical	3	162	junction_2	17.066048165876	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTAAGACAGTTTTTAT	351	False	NA	8	True	AATAAA	-18	NA	24603917	24610816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_24604038_24604118_24604142_24606006_24606207_24608581_24608782_24610325
ENSMUSG00000024273.9_2	chr18	+	2989	3	NIC	ENSMUSG00000024273.9	novel	1065	5	NA	NA	1	-39	intron_retention	FALSE	canonical	3	195	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTAAGACAGTTTTTAT	342	False	NA	8	True	AATAAA	-18	NA	24603908	24610816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_24606207_24608581_24608782_24610325
ENSMUSG00000024273.9_6	chr18	+	1104	4	FSM	ENSMUSG00000024273.9	ENSMUST00000234559.2	1023	4	32	-113	14	-28	multi-exon	FALSE	canonical	3	162	junction_1	19.3620476419435	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTTATGATAAAGGTAT	373	False	NA	-11	True	AATAAA	-29	NA	24603939	24610827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_24604142_24606006_24606207_24608581_24608782_24610325
ENSMUSG00000024273.9_7	chr18	+	280	1	NIC	ENSMUSG00000024273.9	novel	1146	5	NA	NA	14	-2110	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	373	False	NA	NA	False	NA	NA	NA	24603939	24604219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_24603900_24604200
ENSMUSG00000024273.9_9	chr18	+	2854	4	NIC	ENSMUSG00000024273.9	novel	1146	5	NA	NA	-5	60	intron_retention	FALSE	canonical	3	181	junction_1	11.0252236056942	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGCCCTGCAGCAGATGA	354	False	NA	-34	True	NA	NA	NA	24603920	24610774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_24604038_24604118_24606207_24608581_24608782_24610325
ENSMUSG00000024276.8_0	chr18	+	5808	4	NIC	ENSMUSG00000024276.8	novel	5472	4	NA	NA	-10	-9	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	35.3647658929996	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAAACATTTTGTGTGGA	NA	False	NA	13	True	GATAAA	-15	NA	24087738	24097721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_24088241_24089395_24089911_24090111_24090254_24093072
ENSMUSG00000024276.8_1	chr18	+	5512	4	NNC	ENSMUSG00000024276.8	novel	5472	4	NA	NA	-10	-12	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	31.5946549628608	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGCAAACATTTTGTGT	NA	False	NA	10	True	GATAAA	-12	NA	24087738	24097718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_24087948_24089395_24089911_24090111_24090254_24093072
ENSMUSG00000024276.8_2	chr18	+	5642	4	NIC	ENSMUSG00000024276.8	novel	5472	4	NA	NA	-4	-9	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	24.0554914035583	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAAACATTTTGTGTGGA	NA	False	NA	13	True	GATAAA	-15	NA	24087744	24097721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_24088081_24089395_24089911_24090111_24090254_24093072
ENSMUSG00000024276.8_3	chr18	+	5486	4	FSM	ENSMUSG00000024276.8	ENSMUST00000060762.6	5472	4	-26	12	-13	-12	multi-exon	FALSE	canonical	3	23	junction_1	32.0659043568433	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGCAAACATTTTGTGT	NA	False	NA	10	True	GATAAA	-12	NA	24087735	24097718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_24087919_24089395_24089911_24090111_24090254_24093072
ENSMUSG00000024276.8_6	chr18	+	5251	3	ISM	ENSMUSG00000024276.8	ENSMUST00000060762.6	5472	4	1689	9	1535	-9	3prime_fragment	FALSE	canonical	3	90	junction_1	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAAACATTTTGTGTGGA	460	False	NA	13	True	GATAAA	-15	NA	24089450	24097721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_24089911_24090111_24090254_24093072
ENSMUSG00000024276.8_9	chr18	+	3129	1	ISM	ENSMUSG00000024276.8	ENSMUST00000060762.6	5472	4	6834	6	6680	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACATTTTGTGTGGATCT	5605	False	NA	16	True	GATAAA	-18	NA	24094595	24097724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_24094600_24097700
ENSMUSG00000024277.15_1	chr18	+	2519	7	FSM	ENSMUSG00000024277.15	ENSMUST00000025127.5	4026	7	14	1493	14	0	multi-exon	FALSE	canonical	3	115	junction_6	13.0596920161065	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGCTTTGAAATTTCTT	NA	False	NA	NA	False	AATAAA	-18	NA	23937054	24025421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_23937279_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
ENSMUSG00000024283.16_0	chr18	+	3075	14	FSM	ENSMUSG00000024283.16	ENSMUST00000074919.11	3070	14	-1	-4	-1	4	multi-exon	FALSE	canonical	3	146	junction_1	117.532571338518	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACATTTTGTTACTTTT	6	True	NA	NA	False	AATAAA	-12	NA	7868848	7927071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ENSMUSG00000024283.16_18	chr18	+	2939	13	FSM	ENSMUSG00000024283.16	ENSMUST00000092112.11	3094	13	-293	448	3	4	multi-exon	FALSE	canonical	3	106	junction_6	129.708862029118	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACATTTTGTTACTTTT	15	True	NA	NA	False	AATAAA	-12	NA	7869199	7927071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_7869616_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ENSMUSG00000024283.16_21	chr18	+	3266	14	NIC	ENSMUSG00000024283.16	novel	5208	14	NA	NA	1	2	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	152.096862628069	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACACATTTTGTTACTT	13	True	NA	NA	False	AATAAA	-10	NA	7869197	7927069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_7869616_7869990_7870028_7871530_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ENSMUSG00000024283.16_3	chr18	+	2765	13	NIC	ENSMUSG00000024283.16	novel	3070	14	NA	NA	1	0	combination_of_known_junctions	TRUE	canonical	3	106	junction_6	160.217733794428	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAACACATTTTGTTAC	3	True	NA	NA	False	AATAAA	-8	NA	7868845	7927067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ENSMUSG00000024283.16_33	chr18	+	3212	14	NIC	ENSMUSG00000024283.16	novel	5208	14	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	144.918748914632	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACATTTTGTTACTTT	12	True	NA	NA	False	AATAAA	-11	NA	7869196	7927070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_7869578_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ENSMUSG00000024283.16_4	chr18	+	3251	14	FSM	ENSMUSG00000024283.16	ENSMUST00000167020.8	5208	14	0	1957	0	4	multi-exon	FALSE	canonical	3	380	junction_6	70.7547644077099	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACATTTTGTTACTTTT	12	True	NA	NA	False	AATAAA	-12	NA	7869196	7927071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_7869616_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ENSMUSG00000024286.9_0	chr18	-	3051	1	ISM	ENSMUSG00000024286.9	ENSMUST00000053917.6	5757	10	134783	13	71442	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAATGTTAACCATGAC	8	False	NA	-13	True	AATAAA	-11	NA	9315367	9312316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_9312300_9315400
ENSMUSG00000024286.9_1	chr18	-	1981	10	FSM	ENSMUSG00000024286.9	ENSMUST00000053917.6	5757	10	142	3634	-38	13	multi-exon	FALSE	canonical	3	51	junction_9	12.9995251575197	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATTTTCTCTAGCCTTCT	-13	True	NA	-6	True	AATAAA	-24	NA	9450008	9315937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_9316673_9319408_9319572_9332783_9332951_9345193_9345314_9345413_9345472_9349387_9349424_9353406_9353508_9377793_9377829_9386734_9386810_9449517
ENSMUSG00000024286.9_3	chr18	-	4631	3	ISM	ENSMUSG00000024286.9	ENSMUST00000234779.2	1341	7	53916	-3636	53916	-11	3prime_fragment	FALSE	canonical	3	74	junction_1	9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTTAACCATGACTT	NA	False	NA	-11	True	AATAAA	-13	NA	9332893	9312314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_9316673_9319408_9319572_9332783
ENSMUSG00000024287.9_0	chr18	+	2095	21	FSM	ENSMUSG00000024287.9	ENSMUST00000025137.9	4134	21	271	1768	0	-4	multi-exon	FALSE	canonical	0	0	junction_17	177.913574524262	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCTATTGTACAGTTGG	10	True	NA	10	True	AATAAA	-10	NA	9958176	9993721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
ENSMUSG00000024287.9_3	chr18	+	2291	20	NIC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	0	-5	intron_retention	FALSE	canonical	0	0	junction_16	182.47716815401	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGCTATTGTACAGTTG	10	True	NA	9	True	AATAAA	-9	NA	9958176	9993720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
ENSMUSG00000024287.9_9	chr18	+	1974	20	NIC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	0	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_16	237.141378171329	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACAGCTATTGTACAGTT	10	True	NA	8	True	AATAAA	-8	NA	9958176	9993719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
ENSMUSG00000024290.10_0	chr18	-	1037	1	ISM	ENSMUSG00000024290.10	ENSMUST00000067947.7	6440	33	116426	182	2291	-182	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCTGTGCTCATTTAAT	220	False	NA	2	True	AATAAA	-24	NA	10065619	10064582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_10064600_10065600
ENSMUSG00000024290.10_1	chr18	-	6301	33	FSM	ENSMUSG00000024290.10	ENSMUST00000067947.7	6440	33	-50	189	-50	-189	multi-exon	TRUE	canonical	3	139	junction_22	28.5588755906111	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTAATGACTCTGTGCTC	6	True	NA	-5	True	AATAAA	-17	NA	10182095	10064589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_10066052_10067470_10067679_10070218_10070481_10070621_10070701_10072831_10072921_10073114_10073186_10079114_10079275_10080350_10080540_10083121_10083211_10084317_10084412_10090812_10090979_10092128_10092224_10093907_10093978_10095412_10095598_10097482_10097644_10099256_10099408_10100921_10101029_10104073_10104321_10104417_10104510_10106321_10106458_10112343_10112393_10116773_10116863_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
ENSMUSG00000024290.10_3	chr18	-	6298	33	NIC	ENSMUSG00000024290.10	novel	6440	33	NA	NA	-50	-189	combination_of_known_junctions	TRUE	canonical	3	26	junction_22	39.4484310326469	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTAATGACTCTGTGCTC	6	True	NA	-5	True	AATAAA	-17	NA	10182095	10064589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_10066052_10067470_10067679_10070218_10070481_10070621_10070701_10072831_10072921_10073114_10073186_10079114_10079275_10080350_10080540_10083121_10083211_10084317_10084412_10090812_10090979_10092128_10092224_10093907_10093978_10095412_10095598_10097482_10097644_10099256_10099408_10100921_10101029_10104073_10104321_10104417_10104510_10106321_10106458_10112343_10112393_10116773_10116860_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
ENSMUSG00000024293.17_0	chr18	-	4210	11	FSM	ENSMUSG00000024293.17	ENSMUST00000025142.13	4545	11	226	109	3	3	multi-exon	FALSE	canonical	3	113	junction_3	14.2393820090621	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGATAAATGTACTTGAT	8	True	NA	-34	True	AATAAA	-28	NA	10610126	10566615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745_10595876_10596338_10596442_10610025
ENSMUSG00000024293.17_1	chr18	-	2666	9	ISM	ENSMUSG00000024293.17	ENSMUST00000025142.13	4545	11	15924	2	15635	-2	3prime_fragment	FALSE	canonical	3	113	junction_3	15.8113883008419	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTCTCACTAGCTTGCAA	513	False	NA	-8	True	ATTAAA	-19	NA	10594428	10566508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745
ENSMUSG00000024293.17_12	chr18	-	4297	12	FSM	ENSMUSG00000024293.17	ENSMUST00000127099.9	4572	12	261	14	-16	3	multi-exon	FALSE	canonical	1	1	junction_5	52.6252932305684	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGATAAATGTACTTGAT	-9	True	NA	-34	True	AATAAA	-28	NA	10610091	10566615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10577637_10577760_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745_10595876_10596338_10596442_10610025
ENSMUSG00000024293.17_9	chr18	-	4049	10	NIC	ENSMUSG00000024293.17	novel	4545	11	NA	NA	-8	-1	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	42.0954236391324	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGATACAATGTTATATT	-6	True	NA	-21	True	AATAAA	-41	NA	10610140	10566602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_10567647_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745_10595876_10596338_10596442_10610025
ENSMUSG00000024294.15_0	chr18	+	9306	21	FSM	ENSMUSG00000024294.15	ENSMUST00000052838.11	10231	21	77	848	-30	102	multi-exon	FALSE	canonical	3	73	junction_1	10.1237344888139	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATAAAATCTGTGGTGT	-1	True	NA	9	True	AATAAA	-15	NA	10725624	10817730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_10726534_10740982_10741155_10743268_10743399_10747355_10747461_10749322_10749390_10751822_10752028_10755503_10755688_10760803_10760949_10763188_10763323_10768123_10768232_10775528_10775727_10778148_10778301_10792894_10793028_10794477_10794565_10795689_10795852_10798351_10798534_10800055_10800249_10802260_10802340_10804686_10804801_10808033_10808135_10811984
ENSMUSG00000024294.15_28	chr18	+	3290	1	ISM	ENSMUSG00000024294.15	ENSMUST00000052838.11	10231	21	88896	845	16079	105	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATCTGTGGTGTAAT	1830	False	NA	12	True	AATAAA	-18	NA	10814443	10817733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_10814400_10817700
ENSMUSG00000024294.15_3	chr18	+	9314	22	NNC	ENSMUSG00000024294.15	novel	3216	22	NA	NA	12	102	intron_retention	FALSE	non_canonical	2	25	junction_1	17.5479905627145	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATAAAATCTGTGGTGT	12	True	NA	9	True	AATAAA	-15	NA	10725559	10817730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_10725780_10725836_10726534_10740982_10741155_10743268_10743399_10747355_10747461_10749322_10749390_10751822_10752028_10755503_10755688_10760803_10760949_10763188_10763323_10768123_10768232_10775528_10775727_10778148_10778301_10792894_10793028_10794477_10794565_10795689_10795852_10798351_10798534_10800055_10800249_10802260_10802340_10804686_10804801_10808033_10808135_10811984
ENSMUSG00000024295.10_0	chr17	-	779	4	NIC	ENSMUSG00000024295.10	novel	897	4	NA	NA	10	23	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAAGCTGGAATTGGTC	NA	False	NA	NA	False	ATTAAA	-36	NA	33184659	33174947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_33175278_33176622_33176849_33179548_33179752_33184639
ENSMUSG00000024295.10_1	chr17	-	577	3	NIC	ENSMUSG00000024295.10	novel	897	4	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCTGATATTCATTGTT	NA	False	NA	NA	False	ATTAAA	-12	NA	33184684	33174971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_33175278_33176622_33176849_33184639
ENSMUSG00000024298.16_0	chr17	-	3634	1	ISM	ENSMUSG00000024298.16	ENSMUST00000159086.10	10851	4	19155	3	18415	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGGTCTTTGGTGCTGT	NA	False	NA	-8	True	NA	NA	NA	32988106	32984472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32984500_32988100
ENSMUSG00000024298.16_1	chr17	-	10809	4	FSM	ENSMUSG00000024298.16	ENSMUST00000159086.10	10851	4	35	7	-2	-7	multi-exon	FALSE	canonical	3	18	junction_3	1.24721912892465	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAAATTGGTCTTTGGTG	NA	False	NA	-12	True	NA	NA	NA	33007226	32984476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32994983_32996130_32996192_32996374_32996502_33007111
ENSMUSG00000024299.18_16	chr17	+	5961	15	NIC	ENSMUSG00000024299.18	novel	4121	24	NA	NA	22	0	intron_retention	FALSE	canonical	2	3	junction_5	7.40380486848568	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTCTGCTCCTGACCGG	NA	False	NA	2	True	AATAAA	-15	NA	33750736	33772741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_33750772_33756060_33756150_33756252_33756918_33757041_33757385_33757544_33757670_33762171_33764032_33764277_33764412_33764515_33764640_33767796_33767878_33767970_33768135_33768232_33768360_33768453_33769645_33769987_33770165_33770241_33770405_33772058
ENSMUSG00000024299.18_2	chr17	+	711	3	FSM	ENSMUSG00000024299.18	ENSMUST00000234715.2	2533	3	6	1816	6	-1816	multi-exon	FALSE	canonical	3	35	junction_2	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGTAAGGCTGAAAGCA	NA	False	NA	NA	False	ATTAAA	-15	NA	33743189	33748134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33743233_33747257_33747445_33747653
ENSMUSG00000024299.18_6	chr17	+	1130	5	FSM	ENSMUSG00000024299.18	ENSMUST00000174170.3	1798	5	-28	696	-10	-2	multi-exon	FALSE	canonical	3	25	junction_4	5.3851648071345	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCACGAGTGATGGGCAG	NA	False	NA	NA	False	AATAAA	-37	NA	33743167	33750927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33743233_33747257_33747445_33747653_33748001_33749106_33749264_33750553
ENSMUSG00000024299.18_9	chr17	+	4214	25	FSM	ENSMUSG00000024299.18	ENSMUST00000087623.13	4043	25	-172	1	-172	0	multi-exon	TRUE	canonical	2	2	junction_9	8.74483974822994	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTCTGCTCCTGACCGG	NA	False	NA	2	True	AATAAA	-15	NA	33743005	33772741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33743233_33747257_33747445_33747653_33748001_33749106_33749264_33750553_33750772_33756065_33756150_33756252_33756399_33756873_33756918_33757041_33757148_33757237_33757385_33757544_33757687_33762171_33762280_33762609_33762756_33762845_33762910_33763928_33764032_33764277_33764412_33764515_33764640_33767796_33767878_33767970_33768135_33768232_33768360_33768453_33768584_33769439_33769645_33769987_33770165_33770241_33770405_33772058
ENSMUSG00000024300.18_0	chr17	+	2286	15	ISM	ENSMUSG00000024300.18	ENSMUST00000173426.2	3667	18	3547	10	3547	-4	3prime_fragment	FALSE	canonical	1	4	junction_4	23.6147869620987	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTAAAAGCAAGAAGTAAA	NA	False	NA	NA	False	AATAAA	-9	NA	33805123	33826728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33805258_33807076_33807163_33809801_33809884_33811894_33812002_33812994_33813094_33813196_33813342_33816914_33817030_33817116_33817287_33820024_33820171_33820632_33820780_33820915_33821065_33821499_33821584_33823230_33823427_33823523_33823694_33826272
ENSMUSG00000024300.18_1	chr17	+	1294	7	ISM	ENSMUSG00000024300.18	ENSMUST00000173426.2	3667	18	18502	10	2964	-4	3prime_fragment	FALSE	canonical	3	43	junction_3	8.43932593411478	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTAAAAGCAAGAAGTAAA	2228	False	NA	NA	False	AATAAA	-9	NA	33820078	33826728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33820171_33820632_33820780_33820915_33821065_33821499_33821584_33823230_33823427_33823523_33823694_33826272
ENSMUSG00000024300.18_3	chr17	+	1217	4	ISM	ENSMUSG00000024300.18	ENSMUST00000173426.2	3667	18	19616	6	4078	0	3prime_fragment	FALSE	canonical	3	62	junction_3	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGCAAGAAGTAAATTAC	3342	False	NA	NA	False	AATAAA	-13	NA	33821192	33826732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33821584_33823230_33823427_33823523_33823694_33826272
ENSMUSG00000024300.18_5	chr17	+	2590	16	ISM	ENSMUSG00000024300.18	ENSMUST00000173426.2	3667	18	2807	10	2807	-4	3prime_fragment	FALSE	canonical	1	1	junction_1	23.8854674552447	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTAAAAGCAAGAAGTAAA	NA	False	NA	NA	False	AATAAA	-9	NA	33804383	33826728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33804654_33805089_33805258_33807076_33807163_33809801_33809884_33811894_33812002_33812994_33813094_33813196_33813342_33816914_33817030_33817116_33817287_33820024_33820171_33820632_33820780_33820915_33821065_33821499_33821584_33823230_33823427_33823523_33823694_33826272
ENSMUSG00000024301.11_0	chr17	+	2308	11	FSM	ENSMUSG00000024301.11	ENSMUST00000078961.6	2631	11	27	296	-3	-296	multi-exon	FALSE	canonical	3	91	junction_5	121.140785865042	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTTTTCTTAATCTTAG	NA	False	NA	7	True	AATAAA	-20	NA	27136091	27151261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27136260_27139770_27139906_27139993_27140094_27140780_27140835_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
ENSMUSG00000024301.11_24	chr17	+	1689	6	ISM	ENSMUSG00000024301.11	ENSMUST00000078961.6	2631	11	5928	296	5846	-296	3prime_fragment	FALSE	canonical	3	122	junction_1	108.627804912002	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTTTTCTTAATCTTAG	NA	False	NA	7	True	AATAAA	-20	NA	27141992	27151261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
ENSMUSG00000024301.11_25	chr17	+	1123	5	ISM	ENSMUSG00000024301.11	ENSMUST00000078961.6	2631	11	7200	296	7118	-296	3prime_fragment	FALSE	canonical	3	266	junction_2	59.8931339971453	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTTTTCTTAATCTTAG	NA	False	NA	7	True	AATAAA	-20	NA	27143264	27151261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
ENSMUSG00000024301.11_7	chr17	+	2252	10	NIC	ENSMUSG00000024301.11	novel	2631	11	NA	NA	-2	-297	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	138.283926920103	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCCTTTTCTTAATCTTA	NA	False	NA	6	True	AATAAA	-19	NA	27136092	27151260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_27136260_27139770_27139906_27139993_27140094_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
ENSMUSG00000024302.17_1	chr18	+	6148	20	NIC	ENSMUSG00000024302.17	novel	3860	25	NA	NA	696	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	3.4472679776448	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACTATTATCTTAGTG	NA	False	NA	8	True	ATTAAA	-11	NA	23630587	23792763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_23630761_23668218_23668287_23678742_23678824_23702618_23702833_23716140_23716227_23723245_23723401_23726028_23726135_23728515_23728683_23730490_23730616_23735647_23735732_23754443_23754532_23755023_23755122_23758138_23758253_23764388_23764486_23776203_23776364_23779253_23779344_23779944_23780111_23784572_23784706_23786385_23786435_23788869
ENSMUSG00000024302.17_2	chr18	+	1505	11	NIC	ENSMUSG00000024302.17	novel	3860	25	NA	NA	700	-17	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	3.43656805548792	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCACTGAACATCTACCC	NA	False	NA	NA	False	AATAAA	-5	NA	23630591	23737271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_23630761_23668218_23668287_23678742_23678824_23702618_23702833_23716140_23716227_23723245_23723401_23726028_23726135_23728515_23728683_23730490_23730616_23735647_23735732_23737021
ENSMUSG00000024302.17_3	chr18	+	2847	15	NIC	ENSMUSG00000024302.17	novel	3860	25	NA	NA	700	-1365	combination_of_known_junctions	FALSE	canonical	1	3	junction_12	2.58429321644651	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATTATTTTGTATATTAT	NA	False	NA	NA	False	AATAAA	-11	NA	23630591	23767469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_23630761_23668218_23668287_23678742_23678824_23702618_23702833_23716140_23716227_23723245_23723401_23726028_23726135_23728515_23728683_23730490_23730616_23735647_23735732_23754443_23754532_23755023_23755122_23758138_23758253_23764388_23764486_23766274
ENSMUSG00000024304.15_0	chr18	-	4077	16	FSM	ENSMUSG00000024304.15	ENSMUST00000025166.14	4843	16	760	6	-24	-6	multi-exon	FALSE	canonical	2	10	junction_5	4.09009644004746	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGTGACTGGTTTGAAC	NA	False	NA	-7	True	AATAAA	-14	NA	16941543	16721939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_16723411_16734678_16734844_16755184_16755325_16757207_16757442_16757776_16758011_16760624_16760768_16762515_16762770_16765260_16765447_16766064_16766203_16773478_16773652_16776986_16777132_16779528_16779685_16781543_16781691_16783328_16783556_16907564_16907677_16941391
ENSMUSG00000024304.15_1	chr18	-	3735	14	ISM	ENSMUSG00000024304.15	ENSMUST00000115850.2	3785	15	19649	-140	19649	-6	3prime_fragment	FALSE	canonical	2	10	junction_5	4.31181121761277	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGTGACTGGTTTGAAC	NA	False	NA	-7	True	AATAAA	-14	NA	16783477	16721939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_16723411_16734678_16734844_16755184_16755325_16757207_16757442_16757776_16758011_16760624_16760768_16762515_16762770_16765260_16765447_16766064_16766203_16773478_16773652_16776986_16777132_16779528_16779685_16781543_16781691_16783328
ENSMUSG00000024304.15_6	chr18	-	3003	10	ISM	ENSMUSG00000024304.15	ENSMUST00000115850.2	3785	15	29610	-140	29610	-6	3prime_fragment	FALSE	canonical	2	10	junction_5	4.61345322045038	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGTGACTGGTTTGAAC	NA	False	NA	-7	True	AATAAA	-14	NA	16773516	16721939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_16723411_16734678_16734844_16755184_16755325_16757207_16757442_16757776_16758011_16760624_16760768_16762515_16762770_16765260_16765447_16766064_16766203_16773478
ENSMUSG00000024308.16_11	chr17	+	2594	8	FSM	ENSMUSG00000024308.16	ENSMUST00000234247.2	2589	8	-6	1	-6	-1	multi-exon	FALSE	canonical	3	105	junction_6	40.4101421902563	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCGGGCCTCTCATTCTC	591	False	NA	11	True	AATAAA	-16	NA	34138604	34148264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145603_34145681_34147113
ENSMUSG00000024308.16_12	chr17	+	2602	8	FSM	ENSMUSG00000024308.16	ENSMUST00000025161.10	2898	8	294	2	-11	-1	multi-exon	FALSE	canonical	3	116	junction_6	36.6951033823983	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCGGGCCTCTCATTCTC	586	False	NA	11	True	AATAAA	-16	NA	34138599	34148264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113
ENSMUSG00000024308.16_3	chr17	+	5494	9	Fusion	ENSMUSG00000024308.16_ENSMUSG00000051390.11	novel	2589	8	NA	NA	2	-1	multi-exon	FALSE	canonical	3	105	junction_7	48.9117508887179	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCGGGCCTCTCATTCTC	NA	False	NA	11	True	AATAAA	-16	NA	34135161	34148264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_+_34135248_34135790_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145603_34145681_34147113
ENSMUSG00000024308.16_5	chr17	+	5497	9	Fusion	ENSMUSG00000024308.16_ENSMUSG00000051390.11	novel	2898	8	NA	NA	2	-1	multi-exon	FALSE	canonical	3	107	junction_1	46.628853728137	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCGGGCCTCTCATTCTC	NA	False	NA	11	True	AATAAA	-16	NA	34135161	34148264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_+_34135248_34135790_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113
ENSMUSG00000024309.16_0	chr17	-	685	4	FSM	ENSMUSG00000024309.16	ENSMUST00000025163.14	807	4	18	104	0	-2	multi-exon	FALSE	canonical	3	1067	junction_1	64.8194072447099	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAAGCCTACTTTACAGC	NA	False	NA	-21	True	AATAAA	-11	NA	34159299	34157898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997
ENSMUSG00000024309.16_1	chr17	-	555	5	FSM	ENSMUSG00000024309.16	ENSMUST00000174048.8	560	5	-3	8	2	-4	multi-exon	FALSE	canonical	3	138	junction_4	444.939602642876	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACCAAGCCTACTTTACA	NA	False	NA	-23	True	AATAAA	-9	NA	34159302	34157900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159140_34159270
ENSMUSG00000024309.16_5	chr17	-	182	1	NIC	ENSMUSG00000024309.16	novel	807	4	NA	NA	1192	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAACCAAGCCTACTT	NA	False	NA	-27	True	AATAAA	-5	NA	34158086	34157904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34157900_34158100
ENSMUSG00000024312.11_0	chr17	+	2205	15	FSM	ENSMUSG00000024312.11	ENSMUST00000025170.11	2229	15	21	3	21	-3	multi-exon	FALSE	canonical	3	240	junction_8	25.4498305996527	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGTGTCTGGACCATCCT	2000	False	NA	10	True	ATTAAA	-13	NA	34159654	34168668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163455_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
ENSMUSG00000024312.11_3	chr17	+	2360	15	NNC	ENSMUSG00000024312.11	novel	2229	15	NA	NA	21	-3	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_9	68.8412844808956	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGTGTCTGGACCATCCT	2000	False	NA	10	True	ATTAAA	-13	NA	34159654	34168668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163300_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
ENSMUSG00000024313.9_1	chr18	+	419	3	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-276	-16613	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_2	15	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATGTCTTGGTTCCA	NA	False	NA	NA	False	NA	NA	NA	21194703	21200629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_21194811_21194905_21195074_21200485
ENSMUSG00000024313.9_2	chr18	+	2684	17	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-273	-7	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_6	16.5481069536669	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTCAAATTGGTGATCT	NA	False	NA	2	True	AATAAA	-14	NA	21194706	21233249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_21194811_21194905_21195074_21200485_21200594_21203810_21203948_21208707_21208759_21209403_21209445_21213486_21213566_21217135_21217254_21219218_21219398_21221601_21221821_21222381_21222535_21224130_21224347_21226277_21226722_21227980_21228161_21229185_21229319_21230344_21230550_21233100
ENSMUSG00000024313.9_6	chr18	+	2550	16	NIC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-44	-7	combination_of_known_junctions	FALSE	canonical	3	34	junction_5	9.33428566569981	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTCAAATTGGTGATCT	NA	False	NA	2	True	AATAAA	-14	NA	21194935	21233249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_21195074_21200485_21200594_21203810_21203948_21208707_21208759_21209403_21209445_21213486_21213566_21217135_21217254_21219218_21219398_21221601_21221821_21222381_21222535_21224130_21224347_21226277_21226722_21227980_21228161_21229185_21229319_21230344_21230550_21233100
ENSMUSG00000024317.16_0	chr18	+	2462	8	FSM	ENSMUSG00000024317.16	ENSMUST00000234107.2	2422	8	-47	7	-47	1	multi-exon	FALSE	canonical	3	116	junction_1	133.739008703443	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGCAGTTTTGTAAAAA	NA	False	NA	3	True	AATAAA	-14	NA	21134350	21160585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ENSMUSG00000024317.16_1	chr18	+	2342	7	FSM	ENSMUSG00000024317.16	ENSMUST00000072847.12	3002	7	-30	690	-30	-2	multi-exon	FALSE	canonical	3	116	junction_1	148.868416917611	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGTTTTGTAAAAAACCTT	NA	False	NA	8	True	AATAAA	-19	NA	21134367	21160590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
ENSMUSG00000024317.16_10	chr18	+	2068	5	FSM	ENSMUSG00000024317.16	ENSMUST00000234545.2	1769	5	-155	-144	32	2	multi-exon	FALSE	canonical	3	50	junction_3	174.891930917353	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGCAGTTTTGTAAAAAA	NA	False	NA	4	True	AATAAA	-15	NA	21134996	21160586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21159142
ENSMUSG00000024317.16_18	chr18	+	2158	6	NIC	ENSMUSG00000024317.16	novel	2422	8	NA	NA	-34	1	combination_of_known_junctions	FALSE	canonical	3	50	junction_3	152.012367917877	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGCAGTTTTGTAAAAA	NA	False	NA	3	True	AATAAA	-14	NA	21135013	21160585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21157465_21157574_21159142
ENSMUSG00000024317.16_33	chr18	+	974	1	ISM	ENSMUSG00000024317.16	ENSMUST00000234107.2	2422	8	25215	6	15832	2	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGCAGTTTTGTAAAAAA	NA	False	NA	4	True	AATAAA	-15	NA	21159612	21160586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_21159600_21160600
ENSMUSG00000024317.16_8	chr18	+	2216	7	FSM	ENSMUSG00000024317.16	ENSMUST00000234536.2	2271	7	49	6	-34	2	multi-exon	FALSE	canonical	3	249	junction_6	95.8227530391399	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGCAGTTTTGTAAAAAA	NA	False	NA	4	True	AATAAA	-15	NA	21135013	21160586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ENSMUSG00000024317.16_9	chr18	+	2117	6	FSM	ENSMUSG00000024317.16	ENSMUST00000052396.7	2769	6	-43	695	40	2	multi-exon	FALSE	canonical	3	201	junction_5	108.138799697426	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGCAGTTTTGTAAAAAA	NA	False	NA	4	True	AATAAA	-15	NA	21135004	21160586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
ENSMUSG00000024319.19_0	chr17	+	3412	18	NIC	ENSMUSG00000024319.19	novel	3383	20	NA	NA	7	516	intron_retention	FALSE	canonical	2	228	junction_9	32.0626549248569	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGACCGTGTCCTCTCCT	NA	False	NA	13	True	NA	NA	NA	34174895	34185463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
ENSMUSG00000024319.19_1	chr17	+	2575	20	FSM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	262	546	129	516	multi-exon	FALSE	canonical	2	228	junction_10	32.2850016205651	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGACCGTGTCCTCTCCT	NA	False	NA	13	True	NA	NA	NA	34175047	34185463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
ENSMUSG00000024319.19_6	chr17	+	2971	19	NIC	ENSMUSG00000024319.19	novel	3383	20	NA	NA	0	516	intron_retention	FALSE	canonical	2	228	junction_10	32.0886599714826	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGACCGTGTCCTCTCCT	NA	False	NA	13	True	NA	NA	NA	34174888	34185463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
ENSMUSG00000024325.9_0	chr17	-	1710	7	FSM	ENSMUSG00000024325.9	ENSMUST00000025183.9	2034	7	29	295	1	-3	multi-exon	FALSE	canonical	3	63	junction_3	8.5764535535124	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTGCAGTTCTCTGTGT	NA	False	NA	-1	True	NA	NA	NA	34243625	34240060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34240458_34240656_34240931_34241269_34241660_34241952_34242169_34242266_34242428_34243262_34243393_34243483
ENSMUSG00000024325.9_10	chr17	-	2092	5	NIC	ENSMUSG00000024325.9	novel	2034	7	NA	NA	1	-5	intron_retention	FALSE	canonical	3	78	junction_2	4.12310562561766	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACCTGCAGTTCTCTGT	NA	False	NA	-3	True	NA	NA	NA	34243625	34240062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34240458_34240656_34240931_34241269_34242169_34242266_34242428_34243262
ENSMUSG00000024325.9_11	chr17	-	1804	6	ISM	ENSMUSG00000024325.9	ENSMUST00000025183.9	2034	7	26	295	-2	-3	intron_retention	FALSE	canonical	3	63	junction_3	8.8090862182181	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTGCAGTTCTCTGTGT	NA	False	NA	-1	True	NA	NA	NA	34243628	34240060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_34240458_34240656_34240931_34241269_34241660_34241952_34242169_34242266_34242428_34243262
ENSMUSG00000024325.9_3	chr17	-	2343	5	NIC	ENSMUSG00000024325.9	novel	2034	7	NA	NA	0	-3	intron_retention	FALSE	canonical	3	80	junction_2	3.11247489949718	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTGCAGTTCTCTGTGT	NA	False	NA	-1	True	NA	NA	NA	34243626	34240060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34240458_34240656_34242169_34242266_34242428_34243262_34243393_34243483
ENSMUSG00000024325.9_7	chr17	-	2000	6	NIC	ENSMUSG00000024325.9	novel	2034	7	NA	NA	4	-3	intron_retention	FALSE	canonical	3	78	junction_2	4.01995024844836	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTGCAGTTCTCTGTGT	NA	False	NA	-1	True	NA	NA	NA	34243622	34240060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34240458_34240656_34240931_34241269_34242169_34242266_34242428_34243262_34243393_34243483
ENSMUSG00000024325.9_9	chr17	-	2049	6	NIC	ENSMUSG00000024325.9	novel	2034	7	NA	NA	1	-3	intron_retention	FALSE	canonical	3	63	junction_2	9.32523458149981	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTGCAGTTCTCTGTGT	NA	False	NA	-1	True	NA	NA	NA	34243625	34240060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34240458_34240656_34241660_34241952_34242169_34242266_34242428_34243262_34243393_34243483
ENSMUSG00000024327.17_0	chr17	-	2355	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	-39	4	3	0	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250633	34247246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
ENSMUSG00000024327.17_1	chr17	-	2073	8	FSM	ENSMUSG00000024327.17	ENSMUST00000169397.9	1550	8	0	-523	0	0	multi-exon	FALSE	canonical	3	49	junction_7	197.419371296905	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250636	34247246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797_34250237_34250521
ENSMUSG00000024327.17_2	chr17	-	2440	6	FSM	ENSMUSG00000024327.17	ENSMUST00000170491.8	2433	6	-7	0	7	0	multi-exon	FALSE	canonical	3	568	junction_4	31.8282893036996	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250629	34247246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539
ENSMUSG00000024327.17_5	chr17	-	1653	7	NIC	ENSMUSG00000024327.17	novel	1550	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	218.983763984659	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250655	34247246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34250521
ENSMUSG00000024331.12_0	chr18	-	4398	17	FSM	ENSMUSG00000024331.12	ENSMUST00000039247.11	4630	17	220	12	144	-12	multi-exon	FALSE	canonical	2	2	junction_1	4.14907745770069	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAAATGGTCGTGTGCA	NA	False	NA	NA	False	AATAAA	-5	NA	20192391	20163701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_20165461_20165546_20165593_20166118_20166380_20167641_20167767_20168332_20168570_20171109_20171335_20174491_20174635_20174753_20175011_20176782_20176969_20177197_20177333_20178460_20178628_20179291_20179437_20180121_20180278_20181331_20181452_20183062_20183263_20184232_20184318_20192240
ENSMUSG00000024331.12_3	chr18	-	4294	16	FSM	ENSMUSG00000024331.12	ENSMUST00000075214.9	4508	16	206	8	206	-8	multi-exon	FALSE	canonical	2	8	junction_1	3.07245829914744	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGTCGTGTGCAGGTG	NA	False	NA	NA	False	AATAAA	-9	NA	20192329	20163697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_20165461_20166118_20166380_20167641_20167767_20168332_20168570_20171109_20171335_20174491_20174635_20174753_20175011_20176782_20176969_20177197_20177333_20178460_20178628_20179291_20179437_20180121_20180278_20181331_20181452_20183062_20183263_20184232_20184318_20192240
ENSMUSG00000024334.10_1	chr17	+	1261	3	ISM	ENSMUSG00000024334.10	ENSMUST00000174670.2	1231	4	1274	0	1274	0	3prime_fragment	FALSE	canonical	2	15	junction_1	2	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCGTGTGTCCTTTTCAC	555	False	NA	NA	False	ACTAAA	-15	NA	34312669	34314207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34313564_34313656_34313793_34313976
ENSMUSG00000024334.10_2	chr17	+	1035	4	ISM	ENSMUSG00000024334.10	ENSMUST00000025192.8	1088	5	1356	1	1274	0	3prime_fragment	FALSE	canonical	2	3	junction_1	6.79869268479038	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCGTGTGTCCTTTTCAC	555	False	NA	NA	False	ACTAAA	-15	NA	34312669	34314207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34313056_34313281_34313564_34313656_34313793_34313976
ENSMUSG00000024335.21_0	chr17	-	3641	12	ISM	ENSMUSG00000024335.21	ENSMUST00000114242.9	4483	13	2415	9	-843	-2	3prime_fragment	TRUE	canonical	3	318	junction_10	50.8649158990899	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTGAGTTAGTTTTCT	9362	False	NA	-18	True	AATAAA	-14	NA	34338306	34331005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579
ENSMUSG00000024335.21_1	chr17	-	4403	13	FSM	ENSMUSG00000024335.21	ENSMUST00000025193.14	4657	13	244	10	244	-3	multi-exon	FALSE	canonical	3	100	junction_12	100.678634774216	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTTTGAGTTAGTTTTC	6338	False	NA	-19	True	AATAAA	-13	NA	34341330	34331006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579_34338875_34341135
ENSMUSG00000024335.21_2	chr17	-	3733	13	ISM	ENSMUSG00000024335.21	ENSMUST00000154232.9	4520	14	1079	2	-843	-2	3prime_fragment	FALSE	canonical	3	88	junction_10	131.526586877162	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTGAGTTAGTTTTCT	9362	False	NA	-18	True	AATAAA	-14	NA	34338306	34331005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335571_34335664_34335881_34336186_34337579
ENSMUSG00000024335.21_8	chr17	-	4535	14	NIC	ENSMUSG00000024335.21	novel	4520	14	NA	NA	205	-2	combination_of_known_junctions	FALSE	canonical	3	88	junction_10	145.754555786584	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTGAGTTAGTTTTCT	6299	False	NA	-18	True	AATAAA	-14	NA	34341369	34331005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335571_34335664_34335881_34336186_34337579_34338875_34341135
ENSMUSG00000024339.13_0	chr17	+	2455	12	FSM	ENSMUSG00000024339.13	ENSMUST00000025197.6	3442	12	981	6	-59	-3	multi-exon	FALSE	canonical	1	1	junction_4	2.62221910942836	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAATGTATGTTATGGTT	6127	False	NA	NA	False	AATAAA	-19	NA	34423481	34435289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34423598_34424260_34424759_34424843_34424959_34427727_34427859_34428063_34428270_34430843_34431042_34431203_34431333_34432988_34433178_34433296_34433471_34433619_34433780_34434307_34434445_34434887
ENSMUSG00000024346.7_1	chr18	-	679	4	FSM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	17	413	17	116	multi-exon	FALSE	canonical	3	3024	junction_2	66.9792671072342	780	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTATGGCATGTGCTTTT	NA	False	NA	-29	True	AATAAA	-14	NA	36587560	36537141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_36537514_36565358_36565444_36584132_36584300_36587505
ENSMUSG00000024349.11_0	chr18	-	1849	8	FSM	ENSMUSG00000024349.11	ENSMUST00000115728.5	2299	8	95	355	3	-3	multi-exon	TRUE	canonical	2	5	junction_4	3.35638289270592	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTCTAGAATGGCCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	35873512	35867088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872274_35872403_35872631_35872977_35873068_35873359
ENSMUSG00000024350.7_0	chr18	-	2433	1	ISM	ENSMUSG00000024350.7	ENSMUST00000025208.7	5146	8	29582	4	13204	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCGACTTTATGACTC	NA	False	NA	-8	True	ATTAAA	-14	NA	35806592	35804159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_35804200_35806600
ENSMUSG00000024350.7_1	chr18	-	1195	8	FSM	ENSMUSG00000024350.7	ENSMUST00000025208.7	5146	8	30	3921	30	7	multi-exon	FALSE	canonical	3	57	junction_2	8.80630571852711	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTCTCTGCTGACTTTGT	NA	False	NA	-3	True	AATACA	-21	NA	35836144	35808076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35836078
ENSMUSG00000024350.7_2	chr18	-	5198	9	NIC	ENSMUSG00000024350.7	novel	5146	8	NA	NA	32	-10	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	22.8250821466211	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATACAAAATTCGACTTTA	NA	False	NA	-14	True	ATTAAA	-8	NA	35836142	35804165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35835464_35835559_35836078
ENSMUSG00000024350.7_4	chr18	-	3555	9	NIC	ENSMUSG00000024350.7	novel	5146	8	NA	NA	-6	-1781	combination_of_known_junctions	FALSE	canonical	2	2	junction_8	26.5329983228432	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCGGCCCTGTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	35836180	35805936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35835464_35835649_35836078
ENSMUSG00000024352.13_0	chr18	-	655	6	FSM	ENSMUSG00000024352.13	ENSMUST00000025209.12	702	6	40	7	10	-3	multi-exon	FALSE	canonical	3	154	junction_2	20.7980768341691	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTAGCTGTAATGCCCA	NA	False	NA	-14	True	AATAAA	-19	NA	35795199	35789748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35793844_35793911_35795064
ENSMUSG00000024352.13_1	chr18	-	789	2	ISM	ENSMUSG00000024352.13	ENSMUST00000236539.2	484	5	3245	-3	3245	-1	3prime_fragment	TRUE	canonical	3	164	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTAATGCCCAACCTCT	NA	False	NA	-8	True	AATAAA	-25	NA	35790635	35789742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_35789898_35790001
ENSMUSG00000024352.13_3	chr18	-	1803	5	ISM	ENSMUSG00000024352.13	ENSMUST00000025209.12	702	6	48	5	-7	-1	intron_retention	FALSE	canonical	3	154	junction_2	14.7203091000155	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGCTGTAATGCCCAAC	NA	False	NA	-12	True	AATAAA	-21	NA	35795191	35789746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35793844
ENSMUSG00000024352.13_6	chr18	-	657	4	FSM	ENSMUSG00000024352.13	ENSMUST00000096573.4	710	4	30	23	0	17	multi-exon	FALSE	canonical	3	181	junction_2	13.2748718344933	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATACAACCTTCTTAGT	NA	False	NA	-24	True	NA	NA	NA	35795209	35793091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35793407_35793496_35793628_35793844_35793911_35795064
ENSMUSG00000024352.13_8	chr18	-	584	5	NIC	ENSMUSG00000024352.13	novel	702	6	NA	NA	-8	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	65.5820097282784	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGCTGTAATGCCCAAC	NA	False	NA	-12	True	AATAAA	-21	NA	35795192	35789746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35795064
ENSMUSG00000024353.6_0	chr18	-	899	4	FSM	ENSMUSG00000024353.6	ENSMUST00000025211.6	904	4	0	5	0	-5	multi-exon	TRUE	canonical	2	5	junction_1	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGAGTAGTGTTGGCTG	NA	False	NA	-6	True	AATAAA	-11	NA	35782420	35780324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35780780_35780876_35780988_35781311_35781437_35782212
ENSMUSG00000024354.14_0	chr18	-	3044	17	NNC	ENSMUSG00000024354.14	novel	3026	15	NA	NA	-2619	-134	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	2.34437491668888	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	35762916	35747790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_35748741_35752440_35752706_35754819_35754916_35755339_35755484_35755564_35755695_35755911_35756018_35756503_35756652_35757123_35757281_35757480_35757602_35757734_35757917_35758052_35758121_35758240_35758330_35758860_35759019_35759411_35759547_35760154_35760217_35760630_35760691_35762743
ENSMUSG00000024354.14_2	chr18	-	3173	17	NNC	ENSMUSG00000024354.14	novel	3026	15	NA	NA	-2632	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	2.25	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAAAAGTTTGAGTCAAGCA	NA	False	NA	NA	False	ATTAAA	-8	NA	35762929	35747677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_35748741_35752440_35752706_35754819_35754916_35755339_35755484_35755564_35755695_35755911_35756018_35756503_35756652_35757123_35757281_35757480_35757602_35757734_35757917_35758052_35758121_35758240_35758330_35758860_35759019_35759411_35759547_35760154_35760217_35760630_35760694_35762743
ENSMUSG00000024357.11_2	chr18	-	1656	10	FSM	ENSMUSG00000024357.11	ENSMUST00000025215.10	1703	10	43	4	8	-4	multi-exon	FALSE	canonical	3	128	junction_3	10.8423039781937	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATGGTCTGTCTCTTGTG	NA	False	NA	-6	True	ATTAAA	-14	NA	35631939	35399452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35631843
ENSMUSG00000024357.11_3	chr18	-	1747	11	NIC	ENSMUSG00000024357.11	novel	1703	10	NA	NA	8	-2	combination_of_known_splicesites	TRUE	canonical	0	0	junction_9	58.245686535571	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGTCTGTCTCTTGTGTC	NA	False	NA	-4	True	ATTAAA	-16	NA	35631939	35399450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35626197_35626287_35631843
ENSMUSG00000024359.11_3	chr18	-	2811	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	14	224	14	-224	multi-exon	TRUE	canonical	3	5978	junction_5	267.479905787332	10039	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGATCTCCTTTGTGAATG	213	False	NA	-16	True	AATAAA	-14	NA	35087396	35070690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
ENSMUSG00000024360.9_0	chr18	-	1060	1	ISM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	28156	7	28156	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATATATTTTGTGTGCT	NA	False	NA	NA	False	ATTAAA	-9	NA	35036904	35035844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_35035800_35036900
ENSMUSG00000024360.9_1	chr18	-	2309	11	FSM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	34	1366	34	-1366	multi-exon	FALSE	canonical	3	901	junction_10	88.1591742248077	1267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTTAAGTGGAACCAAAAA	NA	False	NA	-34	True	AATAAA	-7	NA	35065026	35037203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
ENSMUSG00000024360.9_2	chr18	-	1844	10	ISM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	337	1689	337	-1689	3prime_fragment	FALSE	canonical	3	1038	junction_9	65.5033690585812	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTTGGTCTCTGTTTA	NA	False	NA	-2	True	AATATA	-21	NA	35064723	35037526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621
ENSMUSG00000024366.9_0	chr18	-	1929	8	FSM	ENSMUSG00000024366.9	ENSMUST00000025224.9	1997	8	63	5	63	-5	multi-exon	FALSE	canonical	0	0	junction_2	0.903507902905251	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGCTCTTTCCTAATTT	9413	False	NA	NA	False	ATTAAA	-15	NA	34853377	34822955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_34823677_34823868_34823958_34824317_34824453_34824601_34824706_34828616_34828930_34837533_34837627_34844168_34844457_34853191
ENSMUSG00000024369.17_0	chr17	+	1260	11	FSM	ENSMUSG00000024369.17	ENSMUST00000165953.3	1381	11	4	117	4	1	multi-exon	TRUE	canonical	3	201	junction_1	101.735146335964	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCCGTCAGCCTCTAGT	8	False	NA	31	True	AGTAAA	-21	NA	35069387	35075231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35069439_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUSG00000024369.17_1	chr17	+	1376	11	FSM	ENSMUSG00000024369.17	ENSMUST00000173357.8	1399	11	25	-2	15	2	multi-exon	FALSE	canonical	3	266	junction_1	84.0802592764794	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCCGTCAGCCTCTAGTC	19	False	NA	32	True	AGTAAA	-22	NA	35069398	35075232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35069565_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUSG00000024369.17_4	chr17	+	1445	11	FSM	ENSMUSG00000024369.17	ENSMUST00000097343.11	1607	11	49	113	32	2	multi-exon	FALSE	canonical	3	52	junction_1	144.013228559046	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCCGTCAGCCTCTAGTC	6	True	NA	32	True	AGTAAA	-22	NA	35069415	35075232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35069651_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUSG00000024369.17_5	chr17	+	1216	10	ISM	ENSMUSG00000024369.17	ENSMUST00000173357.8	1399	11	510	-5	500	5	3prime_fragment	FALSE	canonical	3	434	junction_4	41.3533404386163	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGTCAGCCTCTAGTCTTT	147	False	NA	35	True	AGTAAA	-25	NA	35069883	35075235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUSG00000024370.18_0	chr18	-	2070	17	FSM	ENSMUSG00000024370.18	ENSMUST00000025228.12	2084	17	14	0	1	0	multi-exon	FALSE	canonical	3	73	junction_1	259.182247655969	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTACTGTTCTTTCTA	NA	False	NA	NA	False	AATAAA	-14	NA	34784774	34764003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_34764355_34767135_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
ENSMUSG00000024370.18_1	chr18	-	3013	16	FSM	ENSMUSG00000024370.18	ENSMUST00000133181.2	4133	16	14	1106	1	889	multi-exon	FALSE	canonical	3	906	junction_9	78.8679909722569	1969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTATTCCATATAATATT	NA	False	NA	-14	True	AATAAA	-14	NA	34784774	34765841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
ENSMUSG00000024371.15_0	chr17	-	2564	18	FSM	ENSMUSG00000024371.15	ENSMUST00000025230.15	2641	18	74	3	0	-2	multi-exon	TRUE	canonical	1	4	junction_13	3.65842630716852	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCTGTCTGTCTTATGT	NA	False	NA	-3	True	AATAAA	-15	NA	35101002	35081583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35082008_35082154_35082205_35082320_35082451_35082599_35082692_35082838_35082916_35083020_35083187_35083283_35083402_35083487_35083583_35083704_35083846_35085493_35085584_35091342_35091484_35092437_35092577_35094863_35094998_35095129_35095232_35095309_35095487_35098857_35099044_35100547_35100773_35100925
ENSMUSG00000024376.8_0	chr18	-	3055	24	FSM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	-123	634	-76	-44	multi-exon	FALSE	canonical	3	87	junction_23	34.3352756377329	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTAAGTGTCCTTGTCTT	NA	False	NA	-6	True	NA	NA	NA	34140095	33930013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037_34139476_34139821
ENSMUSG00000024376.8_3	chr18	-	2901	23	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	377	634	377	-44	3prime_fragment	FALSE	canonical	3	125	junction_9	28.0317116763164	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTAAGTGTCCTTGTCTT	NA	False	NA	-6	True	NA	NA	NA	34139595	33930013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037
ENSMUSG00000024378.10_0	chr18	-	1992	1	Genic_Genomic	ENSMUSG00000024378.10	novel	NA	NA	NA	NA	12484	64	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCACTGGTCATTGACCTT	NA	False	NA	-16	True	AATAAA	-18	NA	33334335	33332343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_-_33332300_33334300
ENSMUSG00000024378.10_1	chr18	-	5235	6	FSM	ENSMUSG00000024378.10	ENSMUST00000119991.8	941	6	-42	-4252	13	202	multi-exon	FALSE	canonical	1	1	junction_2	21.0959711793508	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTATGCTAATCTGCCAAT	NA	False	NA	-27	True	AATAAA	-6	NA	33346861	33332205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_33336869_33338273_33338379_33339172_33339300_33341229_33341280_33342095_33342211_33346686
ENSMUSG00000024378.10_2	chr18	-	5110	6	FSM	ENSMUSG00000024378.10	ENSMUST00000025236.9	5097	6	43	-56	2	56	multi-exon	FALSE	canonical	3	38	junction_1	4.66476151587624	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCTTTGTCACTGGTCA	NA	False	NA	-24	True	AATAAA	-10	NA	33346872	33332351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_33336869_33338103_33338219_33339172_33339300_33341229_33341280_33342095_33342211_33346686
ENSMUSG00000024378.10_5	chr18	-	4999	5	FSM	ENSMUSG00000024378.10	ENSMUST00000118990.2	648	5	-45	-4306	4	62	multi-exon	FALSE	canonical	0	0	junction_1	19.6643713349804	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCACTGGTCATTGACC	NA	False	NA	-18	True	AATAAA	-16	NA	33346870	33332345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_33336869_33339172_33339300_33341229_33341280_33342095_33342211_33346686
ENSMUSG00000024381.17_0	chr18	+	2086	15	FSM	ENSMUSG00000024381.17	ENSMUST00000091967.13	2091	15	-8	13	7	-7	multi-exon	FALSE	canonical	3	7	junction_10	7.8846919627173	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACCACCCAGAACGAG	NA	False	NA	3	True	AAAAAG	-10	NA	32510289	32568777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32559276_32559406_32564723_32564796_32565035_32565147_32565376_32565479_32568187
ENSMUSG00000024381.17_1	chr18	+	2135	15	NIC	ENSMUSG00000024381.17	novel	2406	19	NA	NA	-13	1	combination_of_known_splicesites	FALSE	canonical	2	5	junction_7	10.3903408834104	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGAACGAGGCGTGTCT	NA	False	NA	11	True	AAAAAG	-18	NA	32510269	32568785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32547997_32548091_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32559276_32559406_32565035_32565147_32565376_32565479_32568187
ENSMUSG00000024381.17_3	chr18	+	1984	14	NIC	ENSMUSG00000024381.17	novel	2091	15	NA	NA	22	-1	combination_of_known_splicesites	FALSE	canonical	3	6	junction_11	8.76518125122715	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACGAGGCGTGTCTTTCT	NA	False	NA	15	True	AAAAAG	-22	NA	32510331	32568789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32559276_32559406_32565035_32565147_32565376_32565479_32568187
ENSMUSG00000024381.17_4	chr18	+	1867	13	FSM	ENSMUSG00000024381.17	ENSMUST00000234496.2	1886	13	21	-2	9	2	multi-exon	FALSE	canonical	3	6	junction_10	7.81024967590665	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACGAGGCGTGTCTTTC	NA	False	NA	14	True	AAAAAG	-21	NA	32510318	32568788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32565035_32565147_32565376_32565479_32568187
ENSMUSG00000024381.17_5	chr18	+	1939	14	NIC	ENSMUSG00000024381.17	novel	2406	19	NA	NA	19	-7	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	10.0660540325881	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACCACCCAGAACGAG	NA	False	NA	3	True	AAAAAG	-10	NA	32510328	32568777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32547997_32548091_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32565035_32565147_32565376_32565479_32568187
ENSMUSG00000024381.17_6	chr18	+	1959	14	FSM	ENSMUSG00000024381.17	ENSMUST00000234857.2	1530	14	13	-442	-2	1	multi-exon	FALSE	canonical	2	3	junction_10	8.17631157710597	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGAACGAGGCGTGTCT	NA	False	NA	11	True	AAAAAG	-18	NA	32510295	32568785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32564723_32564796_32565035_32565147_32565376_32565479_32568187
ENSMUSG00000024381.17_8	chr18	+	1012	3	ISM	ENSMUSG00000024381.17	ENSMUST00000234373.2	2682	6	3742	7	3742	-5	3prime_fragment	FALSE	canonical	3	29	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCACCCAGAACGAGGC	6355	False	NA	5	True	AAAAAG	-12	NA	32564828	32568779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_32565147_32565376_32565479_32568187
ENSMUSG00000024382.14_0	chr18	+	2668	15	FSM	ENSMUSG00000024382.14	ENSMUST00000025241.7	2708	15	33	7	-21	-7	multi-exon	FALSE	canonical	3	78	junction_6	14.4393524078881	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACCACATTTGTCTCTAT	NA	False	NA	NA	False	TATAAA	-17	NA	32373385	32403197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_32373475_32373682_32373889_32376016_32376254_32377851_32377902_32378541_32378678_32378804_32378973_32379619_32379825_32381215_32381531_32387133_32387319_32390242_32390446_32394354_32394452_32397600_32397719_32398670_32398790_32400216_32400370_32402810
ENSMUSG00000024382.14_11	chr18	+	2450	14	ISM	ENSMUSG00000024382.14	ENSMUST00000025241.7	2708	15	462	4	408	-4	3prime_fragment	FALSE	canonical	3	78	junction_5	14.8511350750625	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACATTTGTCTCTATTTT	NA	False	NA	NA	False	TATAAA	-20	NA	32373814	32403200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_32373889_32376016_32376254_32377851_32377902_32378541_32378678_32378804_32378973_32379619_32379825_32381215_32381531_32387133_32387319_32390242_32390446_32394354_32394452_32397600_32397719_32398670_32398790_32400216_32400370_32402810
ENSMUSG00000024383.10_0	chr18	+	9132	17	FSM	ENSMUSG00000024383.10	ENSMUST00000096575.5	10684	17	-116	1668	-9	-1668	multi-exon	FALSE	canonical	2	7	junction_15	3.53055856062465	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTATGATTATCAATTTG	NA	False	NA	NA	False	AATAAA	-36	NA	32296132	32368136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_32296604_32324953_32325024_32329892_32330012_32331703_32331745_32332991_32333092_32336078_32336193_32336852_32336941_32340460_32340592_32341694_32341775_32342781_32342850_32342996_32343090_32345014_32345222_32350196_32350346_32351412_32351545_32353557_32353688_32359604_32359783_32361175
ENSMUSG00000024383.10_3	chr18	+	7129	2	ISM	ENSMUSG00000024383.10	ENSMUST00000096575.5	10684	17	63443	1591	63443	-1591	3prime_fragment	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTATTATTTTTGGCAA	NA	False	NA	NA	False	ATTAAA	-12	NA	32359691	32368213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_32359783_32361175
ENSMUSG00000024383.10_4	chr18	+	4807	1	ISM	ENSMUSG00000024383.10	ENSMUST00000096575.5	10684	17	68746	3	68746	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTGTGTGTATGGATAT	NA	False	NA	5	True	AATAAA	-21	NA	32364994	32369801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_32365000_32369800
ENSMUSG00000024384.5_0	chr18	+	2766	14	FSM	ENSMUSG00000024384.5	ENSMUST00000025243.5	9613	14	36	6811	9	-2	multi-exon	FALSE	canonical	3	171	junction_3	17.4029855290822	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGGTTGTCTCATCATT	NA	False	NA	15	True	AATAAA	-16	NA	32200829	32230570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_32201093_32203159_32203276_32212723_32213631_32216318_32216512_32217231_32217290_32217705_32217804_32219325_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32230202
ENSMUSG00000024384.5_22	chr18	+	1795	12	ISM	ENSMUSG00000024384.5	ENSMUST00000025243.5	9613	14	12525	6808	-3000	1	3prime_fragment	FALSE	canonical	3	171	junction_1	17.4308551351849	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTTGTCTCATCATTGTC	NA	False	NA	18	True	AATAAA	-19	NA	32213318	32230573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_32213631_32216318_32216512_32217231_32217290_32217705_32217804_32219325_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32230202
ENSMUSG00000024384.5_8	chr18	+	2763	14	NIC	ENSMUSG00000024384.5	novel	9613	14	NA	NA	8	-3	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	55.8815314941366	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGGGTTGTCTCATCAT	NA	False	NA	14	True	AATAAA	-15	NA	32200828	32230569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_32201093_32203159_32203276_32212723_32213631_32216321_32216512_32217231_32217290_32217705_32217804_32219325_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32230202
ENSMUSG00000024386.10_0	chr18	-	1186	5	ISM	ENSMUSG00000024386.10	ENSMUST00000234651.2	1575	9	4727	1	2274	-1	3prime_fragment	FALSE	canonical	3	7	junction_1	1.78535710713571	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCCCCGAGTACCTGTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	32266525	32256179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_32256870_32258147_32258266_32260445_32260592_32266199_32266335_32266428
ENSMUSG00000024387.14_1	chr17	-	911	7	FSM	ENSMUSG00000024387.14	ENSMUST00000025246.13	961	7	49	1	49	-1	multi-exon	TRUE	canonical	3	826	junction_1	47.9780042195264	349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGCTGTCTCCTACTGTG	NA	False	NA	-10	True	AATAAA	-14	NA	35340213	35335174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
ENSMUSG00000024391.8_0	chr17	-	874	6	FSM	ENSMUSG00000024391.8	ENSMUST00000025249.7	1013	6	136	3	136	-3	multi-exon	FALSE	canonical	3	28	junction_5	5.65685424949238	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCTCCTGGGTTTTGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	35350890	35347975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35348112_35349055_35349155_35349383_35349483_35349814_35349895_35350170_35350326_35350585
ENSMUSG00000024392.18_1	chr17	+	3903	26	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	-5	1	combination_of_known_junctions	FALSE	canonical	3	434	junction_1	113.385261828864	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGCCTAGTAGTTTCG	8533	False	NA	17	True	AATAAA	-18	NA	35354198	35366283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ENSMUSG00000024392.18_100	chr17	+	3676	25	NIC	ENSMUSG00000024392.18	novel	1722	12	NA	NA	-11	1	combination_of_known_junctions	FALSE	canonical	3	186	junction_11	154.706302168191	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGCCTAGTAGTTTCG	8809	False	NA	17	True	AATAAA	-18	NA	35354474	35366283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ENSMUSG00000024392.18_2	chr17	+	3800	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	-10	1	combination_of_known_junctions	FALSE	canonical	3	186	junction_11	147.653539437202	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGCCTAGTAGTTTCG	8528	False	NA	17	True	AATAAA	-18	NA	35354193	35366283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ENSMUSG00000024392.18_23	chr17	+	3758	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	-7	1	combination_of_known_junctions	FALSE	canonical	3	160	junction_24	156.645809781884	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGCCTAGTAGTTTCG	8531	False	NA	17	True	AATAAA	-18	NA	35354196	35366283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
ENSMUSG00000024392.18_5	chr17	+	3798	25	FSM	ENSMUSG00000024392.18	ENSMUST00000025250.14	3858	25	45	15	-5	1	multi-exon	FALSE	canonical	3	186	junction_11	162.018431736091	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGCCTAGTAGTTTCG	8533	False	NA	17	True	AATAAA	-18	NA	35354198	35366283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ENSMUSG00000024392.18_9	chr17	+	3908	26	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	-7	1	combination_of_known_junctions	FALSE	canonical	3	276	junction_13	131.268238351857	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGCCTAGTAGTTTCG	8531	False	NA	17	True	AATAAA	-18	NA	35354196	35366283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ENSMUSG00000024392.18_98	chr17	+	3788	26	NIC	ENSMUSG00000024392.18	novel	1722	12	NA	NA	-12	1	combination_of_known_junctions	FALSE	canonical	3	276	junction_13	138.874711880889	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGCCTAGTAGTTTCG	8808	False	NA	17	True	AATAAA	-18	NA	35354473	35366283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ENSMUSG00000024392.18_99	chr17	+	3783	26	NIC	ENSMUSG00000024392.18	novel	1722	12	NA	NA	-10	1	combination_of_known_junctions	FALSE	canonical	3	346	junction_1	122.303229720233	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGCCTAGTAGTTTCG	8810	False	NA	17	True	AATAAA	-18	NA	35354475	35366283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ENSMUSG00000024393.15_12	chr17	-	3118	16	ISM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	8751	18	-2887	-6	3prime_fragment	FALSE	canonical	3	318	junction_15	67.144090498635	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTTTAAAAAAAAAAAAGG	5144	False	NA	-19	True	AATAAA	-3	NA	35375122	35368069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369882_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341
ENSMUSG00000024393.15_15	chr17	-	1679	11	ISM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	11181	36	-457	-24	3prime_fragment	FALSE	canonical	3	322	junction_7	59.9436401964379	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAATAATAAAAGAA	7574	False	NA	5	True	NA	NA	NA	35372692	35368087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369882_35371593_35371762_35372027_35372100_35372200_35372342_35372482
ENSMUSG00000024393.15_19	chr17	-	2176	15	ISM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	9980	36	-1658	-24	3prime_fragment	FALSE	canonical	3	322	junction_7	62.8472800703809	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAATAATAAAAGAA	6373	False	NA	5	True	NA	NA	NA	35373893	35368087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369882_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767
ENSMUSG00000024393.15_2	chr17	-	6846	31	FSM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	28	14	28	-2	multi-exon	FALSE	canonical	3	176	junction_20	122.598119434553	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAAAAAGGGGGG	NA	False	NA	-15	True	AATAAA	-7	NA	35383845	35368065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369882_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341_35376184_35376323_35376535_35376854_35377156_35377368_35377560_35377911_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847_35382023_35383710
ENSMUSG00000024393.15_3	chr17	-	6839	31	NIC	ENSMUSG00000024393.15	novel	6888	31	NA	NA	28	-6	combination_of_known_junctions	FALSE	canonical	3	143	junction_7	126.312839146832	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTTTAAAAAAAAAAAAGG	NA	False	NA	-19	True	AATAAA	-3	NA	35383845	35368069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369879_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341_35376184_35376323_35376535_35376854_35377156_35377368_35377560_35377911_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847_35382023_35383710
ENSMUSG00000024393.15_5	chr17	-	3175	16	NIC	ENSMUSG00000024393.15	novel	6888	31	NA	NA	-2947	-6	combination_of_known_junctions	FALSE	canonical	3	143	junction_7	94.6922500642065	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTTTAAAAAAAAAAAAGG	5084	False	NA	-19	True	AATAAA	-3	NA	35375182	35368069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369879_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341
ENSMUSG00000024395.10_0	chr18	+	1835	10	NIC	ENSMUSG00000024395.10	novel	685	5	NA	NA	-9	-5	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	2.62936879248872	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTCGGAGTGTCTGTG	NA	False	NA	NA	False	AATGAA	-10	NA	32055333	32091667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_32055530_32074792_32074953_32077191_32077259_32077488_32077610_32087488_32087639_32088310_32088462_32089310_32089404_32090005_32090055_32090290_32090367_32090895
ENSMUSG00000024399.6_0	chr17	+	1129	3	NNC	ENSMUSG00000024399.6	novel	1160	3	NA	NA	-7546	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCGGCCCTTGCCAGTGT	5185	False	NA	NA	False	AATAAA	-12	NA	35405868	35415278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_35406083_35414025_35414342_35414679
ENSMUSG00000024400.17_0	chr18	+	1159	6	FSM	ENSMUSG00000024400.17	ENSMUST00000234344.2	2416	6	-78	1335	0	-1335	multi-exon	FALSE	canonical	3	387	junction_4	31.1088411870323	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAACTGAATAAAATCTAAA	5655	False	NA	NA	False	AATAAA	-20	NA	31937150	31967140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635
ENSMUSG00000024400.17_2	chr18	+	4545	22	FSM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	0	30	0	-30	multi-exon	FALSE	canonical	3	169	junction_7	93.6872299310541	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATACAGAATGTGATTT	5655	False	NA	9	True	NA	NA	NA	31937150	32040420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749_32020903_32021122_32022194_32026042_32026152_32029653_32030090_32035376_32035541_32035634_32035731_32037288_32037505_32039818
ENSMUSG00000024400.17_47	chr18	+	2190	7	ISM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	84476	30	6432	-30	3prime_fragment	FALSE	canonical	3	203	junction_2	27.4469184669852	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATACAGAATGTGATTT	NA	False	NA	9	True	NA	NA	NA	32021626	32040420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_32022194_32026042_32026152_32029653_32030090_32035376_32035541_32035634_32035731_32037288_32037505_32039818
ENSMUSG00000024400.17_5	chr18	+	3387	16	ISM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	0	17792	0	3235	5prime_fragment	FALSE	canonical	3	169	junction_7	105.765442791532	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAATGTGCGTGTGTGTG	5655	False	NA	NA	False	TTTAAA	-25	NA	31937150	32022658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749_32020903_32021122
ENSMUSG00000024404.8_0	chr18	+	3074	13	FSM	ENSMUSG00000024404.8	ENSMUST00000025270.8	3790	13	21	695	2	-9	multi-exon	FALSE	canonical	3	378	junction_8	18.23058327829	591	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAGAATTGGTTCATTG	5526	False	NA	1	True	ATTAAA	-13	NA	12261818	12289749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
ENSMUSG00000024406.17_0	chr17	+	1329	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	29	4	29	-4	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	3064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATAGCTGAATTTTGTTT	3065	False	NA	-4	True	AATAAA	-16	NA	35816943	35821665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
ENSMUSG00000024406.17_22	chr17	+	400	1	ISM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	4352	3	1549	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAGCTGAATTTTGTTTT	7388	False	NA	-3	True	AATAAA	-17	NA	35821266	35821666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35821300_35821700
ENSMUSG00000024410.16_0	chr18	+	2123	20	FSM	ENSMUSG00000024410.16	ENSMUST00000025276.15	2170	20	17	30	-5	0	multi-exon	FALSE	canonical	3	252	junction_9	24.4724957266604	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATGTAATAAAGTAC	NA	False	NA	NA	False	AATAAA	-15	NA	12301790	12323024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
ENSMUSG00000024410.16_3	chr18	+	2041	19	NIC	ENSMUSG00000024410.16	novel	2170	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	65.1417258325602	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATGTAATAAAGTAC	NA	False	NA	NA	False	AATAAA	-15	NA	12301795	12323024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_12301960_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
ENSMUSG00000024413.15_1	chr18	-	5194	25	FSM	ENSMUSG00000024413.15	ENSMUST00000025279.6	5224	25	29	1	-13	-1	multi-exon	FALSE	canonical	3	21	junction_11	10.5137971521024	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGAGGTCTTTTATTGC	NA	False	NA	-27	True	AATAAA	-15	NA	12369428	12322750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_12324060_12324740_12324904_12326350_12326465_12327119_12327352_12328065_12328267_12329540_12329671_12330238_12330355_12331015_12331207_12331564_12331655_12332429_12332571_12332655_12332784_12333834_12333950_12334620_12334804_12335177_12335368_12337827_12337931_12341363_12341465_12343438_12343666_12344542_12344914_12345251_12345326_12346313_12346564_12347387_12347556_12352234_12352411_12354862_12354970_12356089_12356213_12369237
ENSMUSG00000024413.15_12	chr18	-	4103	18	ISM	ENSMUSG00000024413.15	ENSMUST00000025279.6	5224	25	24546	1	700	-1	3prime_fragment	FALSE	canonical	3	21	junction_11	8.83176086632785	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGAGGTCTTTTATTGC	NA	False	NA	-27	True	AATAAA	-15	NA	12344911	12322750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_12324060_12324740_12324904_12326350_12326465_12327119_12327352_12328065_12328267_12329540_12329671_12330238_12330355_12331015_12331207_12331564_12331655_12332429_12332571_12332655_12332784_12333834_12333950_12334620_12334804_12335177_12335368_12337827_12337931_12341363_12341465_12343438_12343666_12344542
ENSMUSG00000024413.15_15	chr18	-	723	1	ISM	ENSMUSG00000024413.15	ENSMUST00000234044.2	2219	5	4990	3	3853	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGAGGTCTTTTATTG	NA	False	NA	-28	True	AATAAA	-14	NA	12323474	12322751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_12322800_12323500
ENSMUSG00000024413.15_18	chr18	-	2409	8	ISM	ENSMUSG00000024413.15	ENSMUST00000025279.6	5224	25	38296	3	-2697	-3	3prime_fragment	FALSE	canonical	3	36	junction_4	4.73372615022311	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTTGAGGTCTTTTATT	NA	False	NA	-29	True	AATAAA	-13	NA	12331161	12322752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_12324060_12324740_12324904_12326350_12326465_12327119_12327352_12328065_12328267_12329540_12329671_12330238_12330355_12331015
ENSMUSG00000024413.15_3	chr18	-	3092	13	ISM	ENSMUSG00000024413.15	ENSMUST00000025279.6	5224	25	34675	1	-6318	-1	3prime_fragment	FALSE	canonical	3	21	junction_11	8.42450130406674	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGAGGTCTTTTATTGC	NA	False	NA	-27	True	AATAAA	-15	NA	12334782	12322750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_12324060_12324740_12324904_12326350_12326465_12327119_12327352_12328065_12328267_12329540_12329671_12330238_12330355_12331015_12331207_12331564_12331655_12332429_12332571_12332655_12332784_12333834_12333950_12334620
ENSMUSG00000024413.15_5	chr18	-	4522	21	ISM	ENSMUSG00000024413.15	ENSMUST00000025279.6	5224	25	21977	1	-1869	-1	3prime_fragment	FALSE	canonical	3	21	junction_11	9.03548559846121	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGAGGTCTTTTATTGC	NA	False	NA	-27	True	AATAAA	-15	NA	12347480	12322750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_12324060_12324740_12324904_12326350_12326465_12327119_12327352_12328065_12328267_12329540_12329671_12330238_12330355_12331015_12331207_12331564_12331655_12332429_12332571_12332655_12332784_12333834_12333950_12334620_12334804_12335177_12335368_12337827_12337931_12341363_12341465_12343438_12343666_12344542_12344914_12345251_12345326_12346313_12346564_12347387
ENSMUSG00000024413.15_8	chr18	-	5184	25	NNC	ENSMUSG00000024413.15	novel	5224	25	NA	NA	-13	-8	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_19	11.8670294888354	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCCATTTTGAGGTCTT	NA	False	NA	-34	True	AATAAA	-8	NA	12369428	12322757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_12324060_12324740_12324904_12326350_12326465_12327119_12327352_12328065_12328267_12329540_12329671_12330238_12330355_12331015_12331207_12331564_12331655_12332429_12332571_12332655_12332784_12333834_12333950_12334620_12334804_12335177_12335368_12337827_12337931_12341363_12341465_12343438_12343666_12344542_12344914_12345251_12345323_12346313_12346564_12347387_12347556_12352234_12352411_12354862_12354970_12356089_12356213_12369237
ENSMUSG00000024414.14_0	chr11	+	730	4	FSM	ENSMUSG00000024414.14	ENSMUST00000025278.8	756	4	16	10	7	-10	multi-exon	FALSE	canonical	3	766	junction_3	47.8632310744781	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAGATGGAAAGG	NA	False	NA	9	True	NA	NA	NA	94544608	94550905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_94544668_94547312_94547445_94547808_94547877_94550434
ENSMUSG00000024414.14_10	chr11	+	162	1	ISM	ENSMUSG00000024414.14	ENSMUST00000025278.8	756	4	6151	10	5887	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAGATGGAAAGG	NA	False	NA	9	True	NA	NA	NA	94550743	94550905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94550700_94550900
ENSMUSG00000024414.14_6	chr11	+	821	4	FSM	ENSMUSG00000024414.14	ENSMUST00000125148.2	439	4	-20	-362	0	-10	multi-exon	FALSE	canonical	3	93	junction_1	344.111416065592	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAGATGGAAAGG	NA	False	NA	9	True	NA	NA	NA	94544836	94550905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_94544987_94547312_94547445_94547808_94547877_94550434
ENSMUSG00000024414.14_8	chr11	+	670	3	ISM	ENSMUSG00000024414.14	ENSMUST00000025278.8	756	4	2721	10	2457	-10	3prime_fragment	FALSE	canonical	3	766	junction_2	51.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAGATGGAAAGG	NA	False	NA	9	True	NA	NA	NA	94547313	94550905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94547445_94547808_94547877_94550434
ENSMUSG00000024420.10_0	chr18	-	4880	8	FSM	ENSMUSG00000024420.10	ENSMUST00000025288.9	6206	8	120	1206	-19	-3	multi-exon	FALSE	canonical	0	0	junction_3	3.11022015101103	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGCTGTGAGTGTATTTG	NA	False	NA	NA	False	AATAAA	-12	NA	14105724	13821275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_13822082_13848197_13848314_13850672_13850805_13950294_13950380_13976838_13980192_14072018_14072199_14104420_14104462_14105557
ENSMUSG00000024421.17_0	chr18	+	5680	38	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	-1360	-3	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	19.91739698612	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATGATGTTTTATAAG	NA	False	NA	NA	False	AATAAA	-16	NA	12635895	12716067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_12636222_12639977_12640092_12643506_12643617_12646700_12646782_12649538_12649646_12651793_12651845_12652915_12653068_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
ENSMUSG00000024421.17_1	chr18	+	5557	38	NNC	ENSMUSG00000024421.17	novel	5551	38	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	20.7911806329277	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATGATGTTTTATAAG	NA	False	NA	NA	False	AATAAA	-16	NA	12637249	12716067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_12637453_12639977_12640092_12643506_12643617_12646700_12646782_12649538_12649646_12651793_12651845_12652915_12653068_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
ENSMUSG00000024421.17_11	chr18	+	4852	32	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	19808	-4	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	16.1479888600645	47	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATTATGATGTTTTATAA	5010	False	NA	NA	False	AATAAA	-15	NA	12657063	12716066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_12657178_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
ENSMUSG00000024421.17_17	chr18	+	4915	31	NNC	ENSMUSG00000024421.17	novel	5551	38	NA	NA	20131	-3	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_10	12.4134335835551	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATGATGTTTTATAAG	5333	False	NA	NA	False	AATAAA	-16	NA	12657386	12716067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
ENSMUSG00000024421.17_27	chr18	+	3462	22	ISM	ENSMUSG00000024421.17	ENSMUST00000188815.2	5551	38	27890	3	27890	-3	3prime_fragment	FALSE	canonical	3	53	junction_1	12.7627931460511	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATGATGTTTTATAAG	3137	False	NA	NA	False	AATAAA	-16	NA	12665145	12716067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
ENSMUSG00000024422.15_0	chr17	+	3324	20	FSM	ENSMUSG00000024422.15	ENSMUST00000025292.15	3351	20	-16	43	-16	2	multi-exon	TRUE	canonical	3	278	junction_2	372.558080768229	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGCATGGGAACTCTGGA	NA	False	NA	9	True	AATAAA	-16	NA	36190694	36203519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36191011_36192169_36192415_36192521_36192688_36192913_36192971_36193333_36193589_36193736_36193941_36194024_36194217_36194706_36194818_36194911_36195028_36196386_36196598_36196775_36196875_36196981_36197135_36198290_36198432_36198726_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ENSMUSG00000024422.15_64	chr17	+	952	7	ISM	ENSMUSG00000024422.15	ENSMUST00000174366.8	3275	20	8116	-2	-1	2	3prime_fragment	FALSE	canonical	3	1011	junction_1	73.3325757536626	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGCATGGGAACTCTGGA	7387	False	NA	9	True	AATAAA	-16	NA	36198832	36203519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ENSMUSG00000024422.15_73	chr17	+	990	6	ISM	ENSMUSG00000024422.15	ENSMUST00000025292.15	3351	20	8196	17	-11	-13	3prime_fragment	FALSE	canonical	3	1016	junction_3	64.0387382761403	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGTGACGTGAAAACCT	7461	False	NA	35	True	AATAAA	-42	NA	36198906	36203545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ENSMUSG00000024423.7_3	chr18	+	3411	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	349	3	0	-3	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	1447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTCTTATGGCTACATT	NA	False	NA	13	True	NA	NA	NA	13105328	13126004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
ENSMUSG00000024423.7_53	chr18	+	1874	1	ISM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	19152	2	1410	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCTTATGGCTACATTG	NA	False	NA	14	True	NA	NA	NA	13124131	13126005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_13124100_13126000
ENSMUSG00000024424.16_0	chr18	+	1973	14	FSM	ENSMUSG00000024424.16	ENSMUST00000169401.8	1950	14	-30	7	0	-7	multi-exon	FALSE	canonical	1	3	junction_1	13.7926315977239	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTCACCCTGTGACCT	NA	False	NA	-5	True	AATAAA	-9	NA	12732952	12870100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_12733061_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
ENSMUSG00000024424.16_1	chr18	+	2551	14	NIC	ENSMUSG00000024424.16	novel	4385	14	NA	NA	-6	1	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	13.1886628739371	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGTGACCTTGCAGGAG	NA	False	NA	3	True	AATAAA	-17	NA	12776394	12870108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_12777101_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828620_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
ENSMUSG00000024424.16_2	chr18	+	2145	14	FSM	ENSMUSG00000024424.16	ENSMUST00000234966.2	4385	14	424	1816	406	-3	multi-exon	FALSE	canonical	3	26	junction_4	8.52563138615225	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCACCCTGTGACCTTGCA	NA	False	NA	-1	True	AATAAA	-13	NA	12776824	12870104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_12777101_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
ENSMUSG00000024425.5_0	chr18	+	1724	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236085.2	1796	8	59	13	-3	-13	multi-exon	FALSE	canonical	3	612	junction_4	51.8734724387826	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTTACTGTAGATTAGT	9126	False	NA	31	True	AATAAA	-16	NA	38552018	38598237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
ENSMUSG00000024425.5_3	chr18	+	1752	8	FSM	ENSMUSG00000024425.5	ENSMUST00000025293.5	1392	8	-15	-345	12	-13	multi-exon	FALSE	canonical	3	22	junction_7	234.910230357323	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTTACTGTAGATTAGT	9114	False	NA	31	True	AATAAA	-16	NA	38552006	38598237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597313
ENSMUSG00000024426.18_0	chr17	-	1420	13	FSM	ENSMUSG00000024426.18	ENSMUST00000061052.12	1452	13	17	15	-1	-1	multi-exon	FALSE	canonical	3	70	junction_5	27.2308801424657	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTACCGACAAAAAGTGAC	NA	False	NA	-13	True	AATAAA	-23	NA	36220950	36208501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUSG00000024426.18_11	chr17	-	1317	11	NIC	ENSMUSG00000024426.18	novel	1388	12	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	44.8905335232274	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGCTACCGACAAAAAGT	NA	False	NA	-16	True	AATAAA	-20	NA	36220948	36208504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36208808_36209148_36209243_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUSG00000024426.18_2	chr17	-	1350	12	FSM	ENSMUSG00000024426.18	ENSMUST00000077494.13	1340	12	-12	2	-1	1	multi-exon	TRUE	canonical	3	28	junction_5	34.4359508470988	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGCTACCGACAAAAAGTGA	NA	False	NA	-14	True	AATAAA	-22	NA	36220950	36208502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUSG00000024426.18_20	chr17	-	954	9	ISM	ENSMUSG00000024426.18	ENSMUST00000056034.13	1930	10	-14	1485	-2	647	5prime_fragment	FALSE	canonical	3	28	junction_2	36.2299513524377	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTGATGAAGTTAGCAGT	NA	False	NA	NA	False	AATAAA	-24	NA	36220951	36212228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUSG00000024426.18_31	chr17	-	1775	10	NIC	ENSMUSG00000024426.18	novel	1340	12	NA	NA	-1	0	intron_retention	FALSE	canonical	3	28	junction_3	35.5965041979	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTATAGCTACCGACAAAAA	NA	False	NA	-18	True	AATAAA	-18	NA	36220950	36208506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36209360_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUSG00000024426.18_33	chr17	-	1999	11	FSM	ENSMUSG00000024426.18	ENSMUST00000141662.8	2034	11	0	35	0	0	multi-exon	FALSE	canonical	3	5	junction_1	41.2200194080498	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGACATTTTCAGCGAA	NA	False	NA	NA	False	AATAAA	-24	NA	36220937	36210743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36211765_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUSG00000024426.18_4	chr17	-	1385	12	FSM	ENSMUSG00000024426.18	ENSMUST00000149277.8	1388	12	5	-2	5	-1	multi-exon	FALSE	canonical	3	11	junction_2	38.3140567174602	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTACCGACAAAAAGTGAC	NA	False	NA	-13	True	AATAAA	-23	NA	36220944	36208501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36208808_36209148_36209243_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUSG00000024426.18_5	chr17	-	1836	11	NIC	ENSMUSG00000024426.18	novel	1452	13	NA	NA	0	-1	intron_retention	FALSE	canonical	3	70	junction_3	26.6390690528029	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTACCGACAAAAAGTGAC	NA	False	NA	-13	True	AATAAA	-23	NA	36220937	36208501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUSG00000024426.18_6	chr17	-	1364	12	NIC	ENSMUSG00000024426.18	novel	1452	13	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	38.0604130471848	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTACCGACAAAAAGTGAC	NA	False	NA	-13	True	AATAAA	-23	NA	36220937	36208501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36208808_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUSG00000024427.8_0	chr18	-	4648	2	FSM	ENSMUSG00000024427.8	ENSMUST00000025295.8	4755	2	82	25	82	-25	multi-exon	FALSE	canonical	2	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATACACATGGCTGCCA	NA	False	NA	NA	False	TATAAA	-12	NA	38734386	38719324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_38723809_38734222
ENSMUSG00000024429.10_0	chr17	+	2031	12	FSM	ENSMUSG00000024429.10	ENSMUST00000087200.4	2848	12	221	596	221	-596	multi-exon	FALSE	canonical	3	575	junction_1	37.9601792225955	810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCTTCCCCAGGTGGCC	NA	False	NA	22	True	AATAAA	-16	NA	36290963	36299758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36291140_36291508_36291675_36291953_36292091_36292198_36292351_36292449_36292522_36293416_36293625_36293838_36293935_36294286_36294482_36298356_36298536_36298616_36298780_36299004_36299146_36299412
ENSMUSG00000024429.10_13	chr17	+	1815	11	ISM	ENSMUSG00000024429.10	ENSMUST00000087200.4	2848	12	806	596	269	-596	3prime_fragment	FALSE	canonical	3	585	junction_6	35.9699874895725	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCTTCCCCAGGTGGCC	NA	False	NA	22	True	AATAAA	-16	NA	36291548	36299758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_36291675_36291953_36292091_36292198_36292351_36292449_36292522_36293416_36293625_36293838_36293935_36294286_36294482_36298356_36298536_36298616_36298780_36299004_36299146_36299412
ENSMUSG00000024431.16_0	chr18	-	6167	9	FSM	ENSMUSG00000024431.16	ENSMUST00000115567.8	6436	9	3	266	3	-264	multi-exon	FALSE	canonical	3	29	junction_8	14.4649360523993	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAAGTTGTAGTTTT	NA	False	NA	-37	True	ATTAAA	-20	NA	39623724	39543863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050_39620299_39623620
ENSMUSG00000024431.16_1	chr18	-	6387	9	NIC	ENSMUSG00000024431.16	novel	6436	9	NA	NA	36	-14	combination_of_known_junctions	FALSE	canonical	1	4	junction_6	23.7421039505769	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGTGACTCCCAACATG	NA	False	NA	-27	True	AATAAA	-16	NA	39623691	39543613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561666_39561834_39619050_39620299_39623620
ENSMUSG00000024431.16_13	chr18	-	6479	9	NIC	ENSMUSG00000024431.16	novel	6436	9	NA	NA	-2	-265	combination_of_known_junctions	FALSE	canonical	1	4	junction_6	24.9236333627343	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAAGTTGTAGTTT	NA	False	NA	-38	True	ATTAAA	-19	NA	39622943	39543864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561666_39561834_39619050_39620299_39622529
ENSMUSG00000024431.16_3	chr18	-	2957	1	ISM	ENSMUSG00000024431.16	ENSMUST00000115567.8	6436	9	77157	16	73715	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGTGACTCCCAACATG	NA	False	NA	-27	True	AATAAA	-16	NA	39546570	39543613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_39543600_39546600
ENSMUSG00000024431.16_4	chr18	-	5282	9	NIC	ENSMUSG00000024431.16	novel	4989	9	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_8	16.8221394299298	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGGAAAAAA	NA	False	NA	NA	False	AATAGA	-6	NA	39622924	39545039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050_39620299_39622529
ENSMUSG00000024431.16_5	chr18	-	6358	9	NIC	ENSMUSG00000024431.16	novel	6436	9	NA	NA	183	-14	combination_of_known_junctions	FALSE	canonical	2	2	junction_8	22.6770809408971	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGTGACTCCCAACATG	NA	False	NA	-27	True	AATAAA	-16	NA	39624169	39543613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050_39620299_39624124
ENSMUSG00000024431.16_6	chr18	-	5974	8	FSM	ENSMUSG00000024431.16	ENSMUST00000115571.8	6327	8	338	15	325	-15	multi-exon	FALSE	canonical	3	54	junction_5	7.56738436465659	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTATGTGACTCCCAACAT	NA	False	NA	-28	True	AATAAA	-15	NA	39619960	39543614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050
ENSMUSG00000024436.17_0	chr17	-	1065	7	FSM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	7	7	-5	0	multi-exon	FALSE	canonical	3	1264	junction_4	57.4071714451542	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGTTCTTGACTCCCTTT	4303	False	NA	-13	True	AATAAA	-14	NA	36227274	36221277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ENSMUSG00000024436.17_5	chr17	-	2546	6	ISM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	15	5	3	2	intron_retention	FALSE	canonical	3	1264	junction_4	57.164324538999	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTCTTGACTCCCTTTGG	4311	False	NA	-11	True	AATAAA	-16	NA	36227266	36221275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587
ENSMUSG00000024437.7_0	chr5	-	2060	1	FSM	ENSMUSG00000024437.7	ENSMUST00000025307.7	771	1	17	-1306	17	975	mono-exon	FALSE	NA	NA	NA	NA	NA	783	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAAAAAGAAGTA	NA	False	NA	NA	False	ATTAAA	-13	NA	149093002	149090942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_149090900_149093000
ENSMUSG00000024442.7_0	chr18	+	2383	13	FSM	ENSMUSG00000024442.7	ENSMUST00000025314.7	2394	13	5	6	-3	-6	multi-exon	FALSE	canonical	3	315	junction_6	27.9179104200551	553	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTCGGTCTTGCCCTTG	3972	False	NA	14	True	AATAAA	-15	NA	38383316	38395676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
ENSMUSG00000024446.14_0	chr17	-	2054	2	FSM	ENSMUSG00000024446.14	ENSMUST00000173122.2	533	2	-1515	-6	-9	0	multi-exon	FALSE	canonical	3	770	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTGGTATCTCAACT	NA	False	NA	-16	True	AATAAA	-20	NA	36568757	36566558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36566691_36566835
ENSMUSG00000024446.14_1	chr17	-	502	5	FSM	ENSMUSG00000024446.14	ENSMUST00000025319.7	729	5	221	6	-5	0	multi-exon	FALSE	canonical	3	621	junction_3	61.4262769505038	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTTCTGTGGTATC	NA	False	NA	-22	True	AATAAA	-14	NA	36568740	36566564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497_36568599_36568674
ENSMUSG00000024446.14_2	chr17	-	396	4	FSM	ENSMUSG00000024446.14	ENSMUST00000077535.5	437	4	13	28	0	0	multi-exon	FALSE	canonical	3	63	junction_3	333.755399456948	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTTCTGTGGTATC	NA	False	NA	-22	True	AATAAA	-14	NA	36568735	36566564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568674
ENSMUSG00000024446.14_3	chr17	-	594	4	NIC	ENSMUSG00000024446.14	novel	729	5	NA	NA	-3	0	intron_retention	FALSE	canonical	3	710	junction_3	28.7672653471886	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTTCTGTGGTATC	NA	False	NA	-22	True	AATAAA	-14	NA	36568751	36566564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36566691_36566835_36566962_36568333_36568599_36568674
ENSMUSG00000024446.14_4	chr17	-	573	4	FSM	ENSMUSG00000024446.14	ENSMUST00000173486.8	579	4	0	6	0	0	multi-exon	FALSE	canonical	3	621	junction_3	70.7153920067383	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTTCTGTGGTATC	NA	False	NA	-22	True	AATAAA	-14	NA	36568735	36566564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497
ENSMUSG00000024446.14_5	chr17	-	1952	3	NIC	ENSMUSG00000024446.14	novel	729	5	NA	NA	-2	0	intron_retention	FALSE	canonical	3	710	junction_2	30	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTTCTGTGGTATC	NA	False	NA	-22	True	AATAAA	-14	NA	36568737	36566564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36566691_36566835_36568599_36568674
ENSMUSG00000024454.17_0	chr18	-	1894	15	FSM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	40	98	-2	-98	multi-exon	FALSE	canonical	3	500	junction_2	40.0044002681746	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTCTGGGATTTTAATT	NA	False	NA	2	True	AATAAA	-27	NA	38088029	38070122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
ENSMUSG00000024454.17_12	chr18	-	2272	14	NIC	ENSMUSG00000024454.17	novel	2032	15	NA	NA	-2	-97	intron_retention	FALSE	canonical	3	500	junction_2	40.7767772406081	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCTGGGATTTTAATTC	NA	False	NA	3	True	AATAAA	-28	NA	38088029	38070121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
ENSMUSG00000024456.17_1	chr18	-	1554	1	ISM	ENSMUSG00000024456.17	ENSMUST00000115634.8	5666	27	90314	8	8245	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCTCCCTCTAGC	8957	False	NA	-28	True	AATAAA	-7	NA	37978215	37976661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_37976700_37978200
ENSMUSG00000024456.17_10	chr18	-	2058	3	ISM	ENSMUSG00000024456.17	ENSMUST00000115629.9	5416	26	53033	4	24	-4	3prime_fragment	FALSE	canonical	3	94	junction_2	4.5	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCTCCCTCTAGC	736	False	NA	-28	True	AATAAA	-7	NA	37986436	37976661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_37978552_37984603_37984691_37986355
ENSMUSG00000024456.17_14	chr18	-	3042	10	ISM	ENSMUSG00000024456.17	ENSMUST00000115629.9	5416	26	45930	4	-4342	-4	3prime_fragment	FALSE	canonical	0	0	junction_4	29.0610256163912	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCTCCCTCTAGC	5989	False	NA	-28	True	AATAAA	-7	NA	37993539	37976661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_37978552_37984603_37984691_37986355_37986492_37986596_37986762_37987532_37987658_37988526_37988657_37988765_37989006_37989226_37989329_37989505_37989601_37993467
ENSMUSG00000024456.17_4	chr18	-	1953	2	ISM	ENSMUSG00000024456.17	ENSMUST00000115629.9	5416	26	54803	4	1794	-4	3prime_fragment	FALSE	canonical	3	103	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCTCCCTCTAGC	2506	False	NA	-28	True	AATAAA	-7	NA	37984666	37976661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_37978552_37984603
ENSMUSG00000024456.17_5	chr18	-	3491	12	NIC	ENSMUSG00000024456.17	novel	5666	27	NA	NA	7159	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	32.2981973756897	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCTCCCTCTAGC	NA	False	NA	-28	True	AATAAA	-7	NA	38023836	37976661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_37978552_37984603_37984691_37986355_37986492_37986596_37986762_37987532_37987658_37988526_37988657_37988765_37989006_37989226_37989329_37989505_37989601_37993467_37993567_38022750_38022866_38023529
ENSMUSG00000024456.17_6	chr18	-	5601	27	NIC	ENSMUSG00000024456.17	novel	5741	29	NA	NA	10	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	21.3577930845813	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCTCCCTCTAGC	NA	False	NA	-28	True	AATAAA	-7	NA	38068454	37976661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_37978552_37984603_37984691_37986355_37986492_37986596_37986762_37987532_37987658_37988526_37988657_37988765_37989006_37989226_37989329_37989505_37989601_37993467_37993567_38022750_38022866_38023529_38024223_38024845_38025026_38026402_38026468_38027146_38027263_38028234_38028352_38029147_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
ENSMUSG00000024456.17_9	chr18	-	2202	4	ISM	ENSMUSG00000024456.17	ENSMUST00000115629.9	5416	26	52784	4	-225	-4	3prime_fragment	FALSE	canonical	3	87	junction_3	6.54896090146283	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCTCCCTCTAGC	487	False	NA	-28	True	AATAAA	-7	NA	37986685	37976661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_37978552_37984603_37984691_37986355_37986492_37986596
ENSMUSG00000024457.17_0	chr17	+	3149	10	FSM	ENSMUSG00000024457.17	ENSMUST00000130367.8	3187	10	20	18	-10	0	multi-exon	FALSE	canonical	3	108	junction_1	52.5084355362939	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGAAATTTCAAGACAGT	NA	False	NA	13	True	AATAAA	-20	NA	37148054	37170272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_37148157_37148388_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
ENSMUSG00000024457.17_1	chr17	+	3124	9	NIC	ENSMUSG00000024457.17	novel	3187	10	NA	NA	-11	-8	intron_retention	FALSE	canonical	3	63	junction_5	72.172969316774	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGTGGTCAGAAATTTC	NA	False	NA	5	True	AATAAA	-12	NA	37148053	37170264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_37148157_37148388_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37167093_37167117_37167547_37167664_37167880_37167914_37168291
ENSMUSG00000024457.17_2	chr17	+	3181	10	FSM	ENSMUSG00000024457.17	ENSMUST00000053434.15	3198	10	17	0	-10	0	multi-exon	FALSE	canonical	3	153	junction_5	42.9366458349457	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGAAATTTCAAGACAGT	NA	False	NA	13	True	AATAAA	-20	NA	37148054	37170272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_37148157_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
ENSMUSG00000024457.17_3	chr17	+	3154	9	NIC	ENSMUSG00000024457.17	novel	3203	10	NA	NA	-10	-9	intron_retention	FALSE	canonical	3	63	junction_5	65.2246119191215	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCAGTGGTCAGAAATTT	NA	False	NA	4	True	AATAAA	-11	NA	37148054	37170263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_37148157_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37167093_37167117_37167547_37167664_37167880_37167914_37168291
ENSMUSG00000024457.17_31	chr17	+	3347	4	ISM	ENSMUSG00000024457.17	ENSMUST00000156872.2	2249	5	374	18	374	0	3prime_fragment	FALSE	canonical	3	225	junction_1	19.6015872373189	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGAAATTTCAAGACAGT	NA	False	NA	13	True	AATAAA	-20	NA	37165899	37170272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_37167117_37167547_37167664_37167880_37167914_37168291
ENSMUSG00000024457.17_7	chr17	+	3077	9	NIC	ENSMUSG00000024457.17	novel	3187	10	NA	NA	-11	3	intron_retention	FALSE	canonical	3	29	junction_1	72.8807887923834	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATTTCAAGACAGTCAT	NA	False	NA	16	True	AATAAA	-23	NA	37148053	37170275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_37148157_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
ENSMUSG00000024459.19_1	chr17	-	2507	8	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	275	1836	multi-exon	FALSE	canonical	3	28	junction_5	76.1799695136592	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCATGTTGGGTAT	NA	False	NA	-9	True	NA	NA	NA	37299662	37278250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_-_37279193_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37282006_37298307_37298416_37298546_37298823_37299396
ENSMUSG00000024459.19_11	chr17	-	1702	8	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	275	1079	multi-exon	FALSE	canonical	3	13	junction_5	79.6415438712992	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGAATTTGGATTC	NA	False	NA	NA	False	NA	NA	NA	37299662	37279007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_-_37279193_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281958_37298307_37298416_37298546_37298823_37299396
ENSMUSG00000024459.19_27	chr17	-	1937	4	FSM	ENSMUSG00000024459.19	ENSMUST00000145260.2	2459	4	794	-272	302	272	multi-exon	FALSE	canonical	3	146	junction_1	46.3680924774785	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGTGTTAAGTGAGAC	NA	False	NA	-11	True	NA	NA	NA	37299635	37294680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_37295995_37298307_37298416_37298546_37298823_37299396
ENSMUSG00000024459.19_29	chr17	-	1942	4	NIC	ENSMUSG00000024459.19	novel	2459	4	NA	NA	10	272	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	95.5033449094265	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGTGTTAAGTGAGAC	NA	False	NA	-11	True	NA	NA	NA	37300070	37294680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_37295995_37298307_37298416_37298546_37298823_37299826
ENSMUSG00000024462.18_11	chr17	+	1447	3	FSM	ENSMUSG00000024462.18	ENSMUST00000172789.2	1460	3	2	11	2	-11	multi-exon	FALSE	canonical	3	67	junction_1	4.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAAAACCAATTGTTTT	NA	False	NA	5	True	NA	NA	NA	37357461	37360348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_37357669_37358345_37358550_37359312
ENSMUSG00000024462.18_17	chr17	+	6481	19	NIC	ENSMUSG00000024462.18	novel	4204	21	NA	NA	13	0	intron_retention	FALSE	canonical	3	39	junction_6	19.2332177928361	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCAGCACCTCATCCAC	NA	False	NA	26	True	AATAAA	-14	NA	37357472	37385182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_37357669_37358345_37358550_37359312_37362052_37365022_37365158_37365628_37365800_37366737_37366840_37367187_37367254_37367679_37367872_37373425_37373669_37374221_37374286_37375551_37375630_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
ENSMUSG00000024462.18_2	chr17	+	1559	4	FSM	ENSMUSG00000024462.18	ENSMUST00000174456.8	1595	4	25	11	25	-11	multi-exon	FALSE	canonical	3	45	junction_1	13.0213499897497	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAAAACCAATTGTTTT	NA	False	NA	5	True	NA	NA	NA	37356944	37360348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_37357182_37357586_37357669_37358345_37358550_37359312
ENSMUSG00000024462.18_28	chr17	+	4984	16	NIC	ENSMUSG00000024462.18	novel	4036	18	NA	NA	-558	2	intron_retention	FALSE	canonical	3	39	junction_4	20.5279213647061	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGCACCTCATCCACTG	NA	False	NA	28	True	AATAAA	-16	NA	37360964	37385184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_37362052_37365022_37365158_37365628_37365800_37366737_37366840_37367187_37367254_37367679_37367872_37373425_37374286_37375551_37375630_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
ENSMUSG00000024462.18_30	chr17	+	4463	17	ISM	ENSMUSG00000024462.18	ENSMUST00000173823.8	4204	21	4022	-3	-589	3	3prime_fragment	FALSE	canonical	3	39	junction_4	20.2623419179521	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCACCTCATCCACTGT	NA	False	NA	29	True	AATAAA	-17	NA	37360933	37385185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_37362052_37365022_37365158_37365628_37365800_37366737_37366840_37367187_37367254_37367679_37367872_37373425_37373669_37374221_37374286_37375551_37375630_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
ENSMUSG00000024462.18_46	chr17	+	2652	10	ISM	ENSMUSG00000024462.18	ENSMUST00000173823.8	4204	21	17093	-2	129	2	3prime_fragment	FALSE	canonical	3	64	junction_6	12.0646407139026	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGCACCTCATCCACTG	NA	False	NA	28	True	AATAAA	-16	NA	37374004	37385184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_37374286_37375551_37375630_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
ENSMUSG00000024462.18_51	chr17	+	2207	8	ISM	ENSMUSG00000024462.18	ENSMUST00000172792.8	4036	18	17229	14	-2584	0	3prime_fragment	FALSE	canonical	3	64	junction_4	12.9062554047031	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCAGCACCTCATCCAC	NA	False	NA	26	True	AATAAA	-14	NA	37378751	37385182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
ENSMUSG00000024462.18_58	chr17	+	1123	1	ISM	ENSMUSG00000024462.18	ENSMUST00000025338.16	5248	23	27204	775	2726	2	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGCACCTCATCCACTG	NA	False	NA	28	True	AATAAA	-16	NA	37384061	37385184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_37384100_37385200
ENSMUSG00000024472.10_1	chr18	+	389	2	FSM	ENSMUSG00000024472.10	ENSMUST00000202306.2	398	2	8	1	8	-1	multi-exon	FALSE	canonical	3	169	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCCCCTTTTTGTTTTT	NA	False	NA	12	True	AATAAA	-13	NA	44513576	44529151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_44513754_44528939
ENSMUSG00000024472.10_11	chr18	+	2672	1	ISM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	41765	6	41765	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAATTTTGTGGTTTTTT	NA	False	NA	9	True	AATAAA	-14	NA	44555358	44558030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_44555400_44558000
ENSMUSG00000024472.10_2	chr18	+	2986	11	FSM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	-7	5637	-7	-5637	multi-exon	FALSE	canonical	2	46	junction_10	33.3472637558166	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTGAGCCATATTTATAA	NA	False	NA	NA	False	AATACA	-18	NA	44513586	44552399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_44513754_44528939_44529092_44532690_44532819_44533383_44533483_44538276_44538430_44538523_44538637_44538719_44538828_44543249_44543386_44545582_44545694_44548443_44548496_44550632
ENSMUSG00000024474.8_0	chr18	+	1947	20	FSM	ENSMUSG00000024474.8	ENSMUST00000007042.6	1996	20	45	4	6	0	multi-exon	FALSE	non_canonical	0	0	junction_14	168.043095646503	746	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877753	36890688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUSG00000024477.5_1	chr18	-	3476	1	ISM	ENSMUSG00000024477.5	ENSMUST00000236216.2	7477	9	42029	138	9941	-138	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTTAAAAAGATTATCTAT	NA	False	NA	-13	True	NA	NA	NA	46372031	46368555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_46368600_46372000
ENSMUSG00000024477.5_10	chr18	-	5118	9	NIC	ENSMUSG00000024477.5	novel	1278	10	NA	NA	1	-2196	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	40.5308524460071	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46413893	46370613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_46374769_46379628_46379738_46381937_46382123_46387345_46387392_46391151_46391285_46392670_46392823_46395956_46396025_46407652_46407776_46413746
ENSMUSG00000024477.5_2	chr18	-	5114	9	FSM	ENSMUSG00000024477.5	ENSMUST00000236216.2	7477	9	167	2196	1	-2196	multi-exon	FALSE	canonical	3	105	junction_2	12.5642100826116	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46413893	46370613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_46374769_46379628_46379738_46381937_46382123_46387345_46387392_46391151_46391285_46392670_46392823_46395956_46396025_46407656_46407776_46413746
ENSMUSG00000024479.4_0	chr15	+	2729	4	FSM	ENSMUSG00000024479.4	ENSMUST00000025356.4	2950	4	207	14	207	-14	multi-exon	FALSE	canonical	1	1	junction_1	0.942809041582063	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGATAACCTTTTGGGTC	NA	False	NA	-3	True	AATAAA	-7	NA	54434794	54466229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_54435034_54451709_54451881_54461806_54461963_54464066
ENSMUSG00000024480.10_0	chr18	+	1251	7	NIC	ENSMUSG00000024480.10	novel	978	7	NA	NA	-3	-101	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	269.615157833037	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTTCTGTTTTGCTTGGT	NA	False	NA	NA	False	AATAAA	-27	NA	46874961	46923589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_46875149_46887437_46887530_46890448_46890503_46891069_46891182_46912254_46912327_46913727_46913836_46922963
ENSMUSG00000024480.10_1	chr18	+	1196	6	FSM	ENSMUSG00000024480.10	ENSMUST00000025357.9	1520	6	20	304	-2	-101	multi-exon	FALSE	canonical	3	541	junction_4	49.1064150595419	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTTCTGTTTTGCTTGGT	NA	False	NA	NA	False	AATAAA	-27	NA	46874962	46923589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_46875149_46887437_46887530_46891069_46891182_46912254_46912327_46913727_46913836_46922963
ENSMUSG00000024483.20_1	chr18	+	8272	36	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8223	34	NA	NA	-4	-9	multi-exon	FALSE	canonical	3	51	junction_13	31.0697700706796	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36693659	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr18_+_36694109_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747815_36747871_36757561_36758321_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000024483.20_11	chr18	+	8318	36	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8223	34	NA	NA	-2	-9	multi-exon	FALSE	canonical	3	51	junction_13	31.0697700706796	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36693661	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr18_+_36694109_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747767_36747871_36757561_36758321_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000024483.20_13	chr18	+	7402	33	NIC	ENSMUSG00000024483.20	novel	8223	34	NA	NA	-5	-19	combination_of_known_junctions	FALSE	canonical	3	27	junction_32	33.7814089959256	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAAAATGAACAGTGT	NA	False	NA	-9	True	NA	NA	NA	36693658	36791942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_36694109_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747815_36747871_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36791452
ENSMUSG00000024483.20_20	chr18	+	7504	35	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8223	34	NA	NA	5	-9	multi-exon	FALSE	canonical	3	51	junction_13	32.6766823734335	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36693668	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr18_+_36694109_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747815_36747871_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000024483.20_3	chr18	+	7572	35	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8223	34	NA	NA	-15	-9	multi-exon	FALSE	canonical	3	51	junction_13	32.6766823734335	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36693648	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr18_+_36694109_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747767_36747871_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000024483.20_4	chr18	+	7453	35	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8200	34	NA	NA	5	-9	multi-exon	FALSE	canonical	3	35	junction_29	36.6347349687202	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36693668	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr18_+_36694109_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747815_36747871_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788526_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000024483.20_51	chr18	+	5533	22	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8223	34	NA	NA	10599	-9	multi-exon	FALSE	canonical	3	95	junction_1	27.7189490431081	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	4519	False	NA	24	True	AGTAAA	-6	NA	36757963	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr18_+_36758321_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000024483.20_66	chr18	+	3511	11	NIC	ENSMUSG00000117942.2	novel	2235	8	NA	NA	-3416	-9	combination_of_known_splicesites	FALSE	canonical	3	120	junction_5	25.7379097830418	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36777496	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000024483.20_7	chr18	+	8260	36	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8200	34	NA	NA	5	-9	multi-exon	FALSE	canonical	3	35	junction_30	35.0868310664516	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36693668	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr18_+_36694109_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747767_36747871_36757561_36758321_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788526_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000024486.7_0	chr18	-	2339	6	FSM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	30	6	0	-6	multi-exon	FALSE	canonical	3	29	junction_4	10.9068785635488	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCATGTTCTGTTTCATTT	NA	False	NA	-16	True	AATAAA	-16	NA	36648828	36637985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_36639418_36639687_36639779_36640501_36640658_36645609_36645788_36648139_36648314_36648520
ENSMUSG00000024486.7_2	chr18	-	280	1	ISM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	10593	6	10155	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCATGTTCTGTTTCATTT	NA	False	NA	-16	True	AATAAA	-16	NA	36638265	36637985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_36638000_36638300
ENSMUSG00000024486.7_4	chr18	-	2177	3	ISM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	7703	6	7265	-6	3prime_fragment	FALSE	canonical	3	51	junction_1	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCATGTTCTGTTTCATTT	NA	False	NA	-16	True	AATAAA	-16	NA	36641155	36637985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_36639418_36639687_36639779_36640501
ENSMUSG00000024487.6_11	chr18	-	1844	1	NIC	ENSMUSG00000024487.6	novel	3328	6	NA	NA	12064	-1535	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTGCTGTGAAGTTTAC	NA	False	NA	-8	True	ATTAAA	-13	NA	40340327	40338483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_40338500_40340300
ENSMUSG00000024487.6_2	chr18	-	1707	6	FSM	ENSMUSG00000024487.6	ENSMUST00000025364.6	3328	6	85	1536	-1	-1536	multi-exon	FALSE	canonical	3	266	junction_2	22.8962879087419	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTCTGCTGTGAAGTTTA	NA	False	NA	-9	True	ATTAAA	-12	NA	40352397	40338484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_40339454_40340739_40340922_40343800_40343947_40345095_40345269_40351798_40351919_40352280
ENSMUSG00000024491.17_0	chr18	+	6125	20	FSM	ENSMUSG00000024491.17	ENSMUST00000091920.6	6266	20	26	115	7	-4	multi-exon	FALSE	canonical	3	13	junction_8	26.3045239044415	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAATGGTTCACAATTGG	NA	False	NA	-2	True	AATAAA	-9	NA	42408443	42474492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_42408658_42421172_42421292_42425047_42425173_42431497_42431590_42432207_42432402_42433314_42433576_42434787_42435082_42438744_42438880_42450665_42450816_42452866_42453012_42453828_42453983_42454976_42455274_42457119_42457264_42458969_42459090_42460228_42460304_42460418_42460584_42465844_42465950_42466273_42466463_42470027_42470139_42471456
ENSMUSG00000024491.17_1	chr18	+	6303	21	FSM	ENSMUSG00000024491.17	ENSMUST00000236240.2	6301	21	6	-8	6	8	multi-exon	TRUE	canonical	3	82	junction_6	14.1470845052965	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATTGGGGGGAAAAGAGA	NA	False	NA	10	True	AATAAA	-21	NA	42408442	42474504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_42408658_42421172_42421292_42425047_42425173_42431497_42431590_42432207_42432402_42433314_42433576_42434787_42435082_42438744_42438880_42447035_42447201_42450665_42450816_42452866_42453012_42453828_42453983_42454976_42455274_42457119_42457264_42458969_42459090_42460228_42460304_42460418_42460584_42465844_42465950_42466273_42466463_42470027_42470139_42471456
ENSMUSG00000024491.17_21	chr18	+	4449	10	ISM	ENSMUSG00000024491.17	ENSMUST00000091920.6	6266	20	45450	23	21682	-8	3prime_fragment	FALSE	canonical	3	101	junction_5	9.58908844906285	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATTATAACAATCACTA	NA	False	NA	-4	True	TTTAAA	-30	NA	42453867	42474584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_42453983_42454976_42455274_42457119_42457264_42458969_42459090_42460228_42460304_42460418_42460584_42465844_42465950_42466273_42466463_42470027_42470139_42471456
ENSMUSG00000024491.17_28	chr18	+	3337	3	ISM	ENSMUSG00000024491.17	ENSMUST00000237798.2	5565	16	34179	8	34179	-8	3prime_fragment	FALSE	canonical	3	127	junction_2	3.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATTATAACAATCACTA	NA	False	NA	-4	True	TTTAAA	-30	NA	42466364	42474584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_42466463_42470027_42470139_42471456
ENSMUSG00000024491.17_29	chr18	+	2199	1	ISM	ENSMUSG00000024491.17	ENSMUST00000091920.6	6266	20	63977	14	40209	1	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAATCACTAAAAGAGCTG	NA	False	NA	5	True	TTTAAA	-39	NA	42472394	42474593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_42472400_42474600
ENSMUSG00000024493.10_2	chr18	-	3836	32	FSM	ENSMUSG00000024493.10	ENSMUST00000097590.5	3980	32	92	52	-11	-3	multi-exon	FALSE	canonical	1	536	junction_20	328.950941881023	3397	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTGGGCCATGTTATTT	NA	False	NA	-11	True	AATAAA	-15	NA	42395167	42335414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
ENSMUSG00000024497.5_0	chr18	+	2576	2	FSM	ENSMUSG00000024497.5	ENSMUST00000025374.4	2360	2	-189	-27	-189	27	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTCAACCTGAATTGTA	3183	False	NA	NA	False	AATAAA	-7	NA	42527414	42530341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_42527828_42528178
ENSMUSG00000024498.17_0	chr18	+	4096	21	FSM	ENSMUSG00000024498.17	ENSMUST00000025375.15	4101	21	6	-1	6	1	multi-exon	FALSE	canonical	3	254	junction_5	111.046881991346	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGATTGTAAATGATTATT	NA	False	NA	11	True	AATAAA	-18	NA	42644571	42708620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
ENSMUSG00000024498.17_1	chr18	+	4159	22	FSM	ENSMUSG00000024498.17	ENSMUST00000237602.2	4417	22	21	237	7	2	multi-exon	FALSE	canonical	3	436	junction_6	86.5887404766016	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTGTAAATGATTATTG	NA	False	NA	12	True	AATAAA	-19	NA	42644572	42708621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
ENSMUSG00000024498.17_3	chr18	+	4251	23	FSM	ENSMUSG00000024498.17	ENSMUST00000173642.2	3526	23	-16	-709	6	-1	multi-exon	FALSE	canonical	3	105	junction_21	184.268556260818	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGATTGTAAATGATTA	NA	False	NA	9	True	AATAAA	-16	NA	42644571	42708618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707224_42707319_42707582
ENSMUSG00000024501.21_0	chr18	-	5138	14	FSM	ENSMUSG00000024501.21	ENSMUST00000025379.14	2106	14	259	-3291	259	-13	multi-exon	FALSE	canonical	1	1	junction_3	2.11223541811477	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTACCGTTACTGTTCT	NA	False	NA	NA	False	ATTAAA	-9	NA	43526183	43454061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_43457486_43458789_43458953_43461389_43461570_43462755_43462927_43465936_43466079_43466945_43467103_43475306_43475428_43478170_43478240_43486945_43487027_43487807_43487870_43491298_43491464_43494026_43494212_43496567_43496657_43526054
ENSMUSG00000024501.21_2	chr18	-	2811	1	ISM	ENSMUSG00000024501.21	ENSMUST00000121805.9	5479	14	114477	15	21749	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATTACCGTTACTGTT	NA	False	NA	NA	False	ATTAAA	-7	NA	43456874	43454063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_43454100_43456900
ENSMUSG00000024505.17_1	chr18	-	2262	5	FSM	ENSMUSG00000024505.17	ENSMUST00000237137.2	1484	5	-11	-767	-11	661	multi-exon	FALSE	canonical	3	24	junction_2	81.4996165635152	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTGCTATGATTGCTCT	NA	False	NA	-1	True	AATAAA	-15	NA	49888645	49829878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_49831568_49833325_49833455_49857179_49857275_49861435_49861527_49888387
ENSMUSG00000024505.17_4	chr18	-	2444	6	FSM	ENSMUSG00000024505.17	ENSMUST00000163590.9	3145	6	24	677	-10	651	multi-exon	FALSE	canonical	3	168	junction_3	20.6145579627602	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCTTTTGAGTGCTA	NA	False	NA	-11	True	AATAAA	-5	NA	49888644	49829888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_49831568_49833325_49833455_49856688_49856882_49857179_49857275_49861435_49861527_49888387
ENSMUSG00000024505.17_6	chr18	-	905	1	ISM	ENSMUSG00000024505.17	ENSMUST00000163590.9	3145	6	57884	668	36389	660	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGTGCTATGATTGCTC	NA	False	NA	-2	True	AATAAA	-14	NA	49830784	49829879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_49829900_49830800
ENSMUSG00000024505.17_7	chr18	-	2159	4	FSM	ENSMUSG00000024505.17	ENSMUST00000025383.10	1389	4	-13	-757	-13	651	multi-exon	FALSE	canonical	3	19	junction_2	94.5597988341534	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCTTTTGAGTGCTA	NA	False	NA	-11	True	AATAAA	-5	NA	49888647	49829888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_49831568_49833325_49833455_49861435_49861527_49888387
ENSMUSG00000024507.7_0	chr18	+	2627	24	FSM	ENSMUSG00000024507.7	ENSMUST00000025385.7	2684	24	38	19	38	-19	multi-exon	FALSE	canonical	3	285	junction_3	18.279183363144	510	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTACCGCTTGTCTCCC	NA	False	NA	-5	True	AATAAA	-4	NA	50261305	50329317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
ENSMUSG00000024513.17_0	chr18	+	1703	7	FSM	ENSMUSG00000024513.17	ENSMUST00000074058.11	1953	7	244	6	99	-6	multi-exon	FALSE	canonical	3	48	junction_4	103.071846570999	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGACTGATTGGAACTTCT	NA	False	NA	12	True	AATAAA	-12	NA	70701503	70759196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_70702039_70713723_70713884_70726273_70726412_70749635_70749727_70750906_70751085_70755653_70755793_70758734
ENSMUSG00000024513.17_1	chr18	+	1193	3	FSM	ENSMUSG00000024513.17	ENSMUST00000114946.4	1290	3	97	0	97	0	multi-exon	FALSE	canonical	3	203	junction_2	64.5	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGAAGTGCCTGGTGT	NA	False	NA	13	True	AATAAA	-30	NA	70701501	70715983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_70702039_70713723_70713884_70715487
ENSMUSG00000024513.17_3	chr18	+	2787	2	ISM	ENSMUSG00000024513.17	ENSMUST00000114946.4	1290	3	105	2	105	-2	intron_retention	FALSE	canonical	3	332	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTATGGAAGTGCCTGGT	NA	False	NA	11	True	AATAAA	-28	NA	70701509	70715981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_70702039_70713723
ENSMUSG00000024513.17_4	chr18	+	1111	3	NNC	ENSMUSG00000024513.17	novel	1290	3	NA	NA	109	-7	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_2	140	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACACTGTATGGAAGTGC	NA	False	NA	6	True	AATAAA	-23	NA	70701513	70715976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_70702039_70713723_70713884_70715550
ENSMUSG00000024515.14_0	chr18	-	3389	12	FSM	ENSMUSG00000024515.14	ENSMUST00000025393.14	3384	12	-7	2	-7	-2	multi-exon	FALSE	canonical	3	347	junction_11	31.2441730104581	889	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGGAATTCTAGATTTGG	NA	False	NA	-12	True	AATAAA	-17	NA	73836858	73772081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_73773541_73774853_73774993_73781955_73782125_73782796_73782981_73790265_73790317_73791638_73791756_73791849_73791970_73795728_73795939_73808231_73808262_73808841_73809017_73810733_73811111_73836500
ENSMUSG00000024516.14_0	chr18	+	784	6	FSM	ENSMUSG00000024516.14	ENSMUST00000025394.14	860	6	47	29	7	-1	multi-exon	FALSE	canonical	3	349	junction_3	14.5244621242922	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGATGGCTTCCTTTTG	NA	False	NA	NA	False	AATAAA	-11	NA	65933632	65950726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_65933783_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
ENSMUSG00000024516.14_1	chr18	+	2804	5	FSM	ENSMUSG00000024516.14	ENSMUST00000139538.9	2829	5	14	11	-7	-2	multi-exon	FALSE	canonical	3	355	junction_1	12.6565200588471	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGATGGCTTCCTTTT	NA	False	NA	NA	False	AATAAA	-10	NA	65933634	65950725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_65933783_65942515_65942626_65945735_65948029_65949891_65949950_65950530
ENSMUSG00000024516.14_5	chr18	+	2429	3	ISM	ENSMUSG00000024516.14	ENSMUST00000139538.9	2829	5	12232	11	-1232	-2	3prime_fragment	FALSE	canonical	3	364	junction_2	10	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGATGGCTTCCTTTT	NA	False	NA	NA	False	AATAAA	-10	NA	65945852	65950725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_65948029_65949891_65949950_65950530
ENSMUSG00000024518.5_0	chr18	-	1598	3	FSM	ENSMUSG00000024518.5	ENSMUST00000025396.5	1672	3	71	3	51	-3	multi-exon	FALSE	canonical	2	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCGTGCTCATCGACTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	66072089	66067709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_66068561_66071090_66071345_66071596
ENSMUSG00000024518.5_1	chr18	-	925	1	NIC	ENSMUSG00000024518.5	novel	2323	2	NA	NA	2250	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGCGTGCTCATCGACT	NA	False	NA	NA	False	ATTAAA	-18	NA	66068636	66067711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_66067700_66068600
ENSMUSG00000024521.9_0	chr18	+	2506	3	FSM	ENSMUSG00000024521.9	ENSMUST00000236933.2	1012	3	-28	-1466	-10	-14	multi-exon	FALSE	canonical	2	7	junction_1	46	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAAAAATGCCACTGGTC	NA	False	NA	8	True	AATAAA	-20	NA	66591635	66598617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_66591709_66593913_66594070_66596340
ENSMUSG00000024521.9_1	chr18	+	2650	3	FSM	ENSMUSG00000024521.9	ENSMUST00000025399.9	2727	3	63	14	3	-14	multi-exon	FALSE	canonical	3	99	junction_2	7	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAAAAATGCCACTGGTC	NA	False	NA	8	True	AATAAA	-20	NA	66591666	66598617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_66591884_66593913_66594070_66596340
ENSMUSG00000024521.9_5	chr18	+	2016	1	ISM	ENSMUSG00000024521.9	ENSMUST00000025399.9	2727	3	4989	23	4929	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTAACTATTGAAAAATG	NA	False	NA	-1	True	AATAAA	-11	NA	66596592	66598608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_66596600_66598600
ENSMUSG00000024524.18_1	chr18	+	5429	12	FSM	ENSMUSG00000024524.18	ENSMUST00000076605.9	3470	12	586	-2545	-142	-12	multi-exon	FALSE	canonical	2	7	junction_3	2.38452309974618	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGATGAAACTTGGGTT	NA	False	NA	-2	True	AAGAAA	-41	NA	67266678	67359851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_67267042_67267283_67267357_67268382_67268438_67268589_67268710_67324440_67324539_67344118_67344174_67345295_67345370_67346142_67346202_67346558_67346680_67350140_67350272_67351574_67351643_67355639
ENSMUSG00000024524.18_5	chr18	+	1165	4	ISM	ENSMUSG00000024524.18	ENSMUST00000076605.9	3470	12	80514	774	79786	746	3prime_fragment	FALSE	canonical	3	7	junction_2	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTATCTTCTTTCTGTT	2814	False	NA	NA	False	TATAAA	-36	NA	67346606	67356532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_67346680_67350140_67350272_67351574_67351643_67355639
ENSMUSG00000024525.8_0	chr18	+	1361	8	FSM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	61	3632	-5	1931	multi-exon	FALSE	canonical	3	959	junction_6	106.526800307122	870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGGGTCTTCCTCCAG	NA	False	NA	NA	False	AATAAA	-18	NA	67422316	67451910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
ENSMUSG00000024525.8_40	chr18	+	2145	2	NIC	ENSMUSG00000024525.8	novel	5054	8	NA	NA	6746	1931	intron_retention	FALSE	canonical	3	1255	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGGGTCTTCCTCCAG	NA	False	NA	NA	False	AATAAA	-18	NA	67448404	67451910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_67450104_67451464
ENSMUSG00000024525.8_44	chr18	+	2132	1	ISM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	29986	1169	10583	-1169	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATTTCTTTTATGAGAAA	NA	False	NA	13	True	NA	NA	NA	67452241	67454373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_67452200_67454400
ENSMUSG00000024526.10_1	chr18	+	922	5	FSM	ENSMUSG00000024526.10	ENSMUST00000025404.10	1115	5	188	5	188	-5	multi-exon	FALSE	canonical	1	47	junction_1	40.4042077016738	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACTTCCTTGCAACTGG	6396	False	NA	23	True	AATAAA	-21	NA	67476861	67500850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_67476911_67491779_67491925_67493165_67493313_67499444_67499627_67500451
ENSMUSG00000024527.11_0	chr18	-	3088	17	FSM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	0	6	0	-6	multi-exon	FALSE	canonical	3	685	junction_14	36.0532917186489	1538	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATATGAAGGGTTGCCAT	NA	False	NA	-8	True	AATAAA	-25	NA	67582242	67537839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_67538585_67540335_67540531_67542467_67542669_67547147_67547264_67548568_67548680_67554055_67554182_67554277_67554386_67556014_67556169_67558958_67559097_67562050_67562325_67564723_67564849_67567224_67567300_67573251_67573405_67573511_67573616_67575379_67575458_67575820_67575921_67581957
ENSMUSG00000024528.9_1	chr18	+	1595	8	FSM	ENSMUSG00000024528.9	ENSMUST00000025406.9	2656	8	1	1060	1	-1060	multi-exon	FALSE	canonical	3	351	junction_5	82.8179710360657	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGAATTTTAGGTTTTCTC	NA	False	NA	NA	False	CATAAA	-15	NA	52598765	52623943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515
ENSMUSG00000024528.9_3	chr18	+	2588	9	NNC	ENSMUSG00000024528.9	novel	2656	8	NA	NA	1	-2	at_least_one_novel_splicesite	TRUE	canonical	3	36	junction_8	183.6769837922	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTCTATGTGGCCTGCA	NA	False	NA	0	True	ATTAAA	-11	NA	52598765	52625001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515_52624796_52624860
ENSMUSG00000024528.9_5	chr18	+	2592	9	NNC	ENSMUSG00000024528.9	novel	2656	8	NA	NA	1	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	194.53691005822	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTCTATGTGGCCTGCA	NA	False	NA	0	True	ATTAAA	-11	NA	52598765	52625001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515_52624796_52624856
ENSMUSG00000024530.9_6	chr18	+	2119	7	FSM	ENSMUSG00000024530.9	ENSMUST00000025411.9	1404	7	22	-737	-3	737	multi-exon	FALSE	canonical	3	4	junction_6	3.34995854037363	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGTAACTATTTTTGTG	NA	False	NA	NA	False	ATTAAA	-9	NA	67597957	67613642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_67598027_67605926_67606096_67606810_67606901_67609864_67609936_67610033_67610137_67611019_67611132_67612137
ENSMUSG00000024533.18_1	chr18	-	4904	16	NIC	ENSMUSG00000024533.18	novel	5405	17	NA	NA	-110	-7	combination_of_known_junctions	FALSE	canonical	3	61	junction_15	10.4234777732237	204	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGACTTAATGACCTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	67743970	67621850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_67624620_67628209_67628347_67628432_67628461_67629631_67629703_67630246_67630385_67636500_67636644_67638720_67638815_67639623_67639797_67652360_67652491_67652873_67652961_67661933_67662099_67663476_67663555_67678684_67678811_67685643_67685878_67720894_67720930_67743474
ENSMUSG00000024533.18_3	chr18	-	2195	1	ISM	ENSMUSG00000024533.18	ENSMUST00000045105.13	5033	15	62005	313	6271	252	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATTGAAGGACCATGAAGA	7875	False	NA	NA	False	AATAAA	-14	NA	67623786	67621591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_67621600_67623800
ENSMUSG00000024533.18_5	chr18	-	3774	15	NIC	ENSMUSG00000024533.18	novel	5405	17	NA	NA	-96	-1088	combination_of_known_splicesites	FALSE	canonical	1	3	junction_14	23.13227271187	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCATGTTAGTAGTTCAT	NA	False	NA	NA	False	AATAAA	-21	NA	67743956	67622931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_67624620_67628209_67628347_67628432_67628461_67629631_67629703_67630246_67630385_67636500_67636644_67638720_67638815_67639623_67639797_67652360_67652491_67652873_67652961_67661933_67662099_67663476_67663555_67678684_67678811_67685643_67685878_67743474
ENSMUSG00000024535.17_0	chr18	+	1891	7	FSM	ENSMUSG00000024535.17	ENSMUST00000165032.9	1977	7	66	20	0	-20	multi-exon	TRUE	canonical	3	19	junction_3	2.70801280154532	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAACAAACAAAAGT	NA	False	NA	NA	False	TTTAAA	-30	NA	53378799	53523972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_53378925_53460483_53460568_53473201_53473307_53516141_53516237_53517688_53517722_53518249_53518315_53522588
ENSMUSG00000024537.6_0	chr18	+	1056	7	FSM	ENSMUSG00000024537.6	ENSMUST00000025418.4	1059	7	3	0	1	0	multi-exon	FALSE	canonical	3	396	junction_3	27.1871088733041	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774671	67787232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_67774806_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
ENSMUSG00000024537.6_1	chr18	+	986	6	NIC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	8	3	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	169.713169789501	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTTTTATCTGGAAAGTAT	NA	False	NA	29	True	AATAAA	-35	NA	67774685	67787235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_67774806_67777378_67777551_67781197_67781317_67781842_67782017_67786222_67786344_67786955
ENSMUSG00000024537.6_2	chr18	+	3130	6	NIC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	2	-1	intron_retention	FALSE	canonical	3	414	junction_3	24.7434839907399	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCGGTTTTATCTGGAAA	NA	False	NA	25	True	AATAAA	-31	NA	67774672	67787231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_67774806_67777378_67777551_67779062_67781317_67781842_67782017_67786222_67786344_67786955
ENSMUSG00000024538.9_0	chr18	-	1313	5	FSM	ENSMUSG00000024538.9	ENSMUST00000025419.9	1403	5	84	6	84	-6	multi-exon	FALSE	canonical	3	373	junction_3	12.8354976529934	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGACTTTTTTTTGCAAG	NA	False	NA	-17	True	ATTAAA	-14	NA	53551103	53539409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_53540138_53542196_53542382_53544058_53544153_53544577_53544692_53550911
ENSMUSG00000024538.9_1	chr18	-	1626	2	ISM	ENSMUSG00000024538.9	ENSMUST00000025419.9	1403	5	8093	6	8093	-6	3prime_fragment	FALSE	canonical	3	395	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGACTTTTTTTTGCAAG	NA	False	NA	-17	True	ATTAAA	-14	NA	53543094	53539409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_53540138_53542196
ENSMUSG00000024538.9_2	chr18	-	3410	3	NIC	ENSMUSG00000024538.9	novel	1403	5	NA	NA	84	-11	intron_retention	FALSE	canonical	3	375	junction_2	10	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCAATGGACTTTTTTTT	NA	False	NA	-22	True	ATTAAA	-9	NA	53551103	53539414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_53540138_53542196_53544692_53550911
ENSMUSG00000024539.18_0	chr18	-	1549	10	FSM	ENSMUSG00000024539.18	ENSMUST00000025420.14	1568	10	12	7	-3	-7	multi-exon	FALSE	canonical	0	0	junction_7	132.404915801473	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGACTATGTTGGTTTG	NA	False	NA	-22	True	ATTAAA	-11	NA	67857646	67798588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
ENSMUSG00000024539.18_20	chr18	-	2644	9	FSM	ENSMUSG00000024539.18	ENSMUST00000122412.2	2667	9	19	4	-3	-4	multi-exon	FALSE	canonical	0	0	junction_6	140.12890271104	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTACATTGTCCCTTAC	NA	False	NA	NA	False	AATAAA	-17	NA	67857646	67804285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
ENSMUSG00000024542.10_10	chr18	+	8067	46	NNC	ENSMUSG00000024542.10	novel	8093	46	NA	NA	-6	-6	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_43	31.5891370608143	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAACTTGTCCTTTTT	128	False	NA	2	True	AATAAA	-11	NA	67933197	68018233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67940327_67940477_67943146_67943200_67945396_67945518_67946942_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345_67956411_67957652_67957863_67961421_67961546_67962903_67963035_67967566_67968390_67968479_67968595_67970987_67971157_67974054_67974932_67976206_67976356_67980422_67980654_67983182_67983309_67983480_67983625_67983745_67983807_67984735_67984876_67985027_67985121_67985974_67986094_67987121_67987299_67988355_67988447_67989218_67989396_67991060_67991322_67991925_67992042_67993604_67993715_67995479_67995625_67998660_67998852_67999501_67999626_68001511_68001618_68002400_68002609_68003642_68003723_68004532_68004629_68011026_68011147_68011609_68011732_68013818_68013949_68014354_68014414_68017809
ENSMUSG00000024542.10_13	chr18	+	1422	4	FSM	ENSMUSG00000024542.10	ENSMUST00000224387.2	1425	4	-2	5	-2	-5	multi-exon	FALSE	canonical	3	112	junction_2	11.1455023315337	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAACCAAAAAAAAAAAA	111	False	NA	NA	False	NA	NA	NA	67933180	67938442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435
ENSMUSG00000024542.10_47	chr18	+	5598	30	ISM	ENSMUSG00000024542.10	ENSMUST00000025425.7	8093	46	34573	8	-6331	-6	3prime_fragment	FALSE	canonical	3	122	junction_1	26.1785236610118	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAACTTGTCCTTTTT	NA	False	NA	2	True	AATAAA	-11	NA	67967749	68018233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_67968390_67968479_67968595_67970987_67971157_67974054_67974932_67976206_67976356_67980422_67980654_67983182_67983309_67983480_67983625_67983745_67983807_67984735_67984876_67985027_67985121_67985974_67986094_67987121_67987299_67988355_67988447_67989218_67989396_67991060_67991322_67991925_67992042_67993604_67993715_67995479_67995625_67998660_67998852_67999501_67999626_68001511_68001618_68002400_68002609_68003642_68003723_68004532_68004629_68011026_68011147_68011609_68011732_68013821_68013949_68014354_68014414_68017809
ENSMUSG00000024542.10_5	chr18	+	8076	46	FSM	ENSMUSG00000024542.10	ENSMUST00000025425.7	8093	46	9	8	3	-6	multi-exon	FALSE	canonical	3	91	junction_4	30.2980747463157	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAACTTGTCCTTTTT	116	False	NA	2	True	AATAAA	-11	NA	67933185	68018233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67940327_67940477_67943146_67943200_67945396_67945518_67946942_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345_67956411_67957652_67957863_67961421_67961546_67962903_67963035_67967566_67968390_67968479_67968595_67970987_67971157_67974054_67974932_67976206_67976356_67980422_67980654_67983182_67983309_67983480_67983625_67983745_67983807_67984735_67984876_67985027_67985121_67985974_67986094_67987121_67987299_67988355_67988447_67989218_67989396_67991060_67991322_67991925_67992042_67993604_67993715_67995479_67995625_67998660_67998852_67999501_67999626_68001511_68001618_68002400_68002609_68003642_68003723_68004532_68004629_68011026_68011147_68011609_68011732_68013821_68013949_68014354_68014414_68017809
ENSMUSG00000024542.10_54	chr18	+	4363	27	ISM	ENSMUSG00000024542.10	ENSMUST00000025425.7	8093	46	41189	8	285	-6	3prime_fragment	FALSE	canonical	3	128	junction_5	24.7102738377399	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAACTTGTCCTTTTT	2020	False	NA	2	True	AATAAA	-11	NA	67974365	68018233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_67974932_67976206_67976356_67980422_67980654_67983182_67983309_67983480_67983625_67983745_67983807_67984735_67984876_67985027_67985121_67985974_67986094_67987121_67987299_67988355_67988447_67989218_67989396_67991060_67991322_67991925_67992042_67993604_67993715_67995479_67995625_67998660_67998852_67999501_67999626_68001511_68001618_68002400_68002609_68003642_68003723_68004532_68004629_68011026_68011147_68011609_68011732_68013821_68013949_68014354_68014414_68017809
ENSMUSG00000024544.10_2	chr18	+	1846	6	FSM	ENSMUSG00000024544.10	ENSMUST00000063775.5	2495	6	-242	891	-242	-891	multi-exon	FALSE	canonical	0	0	junction_1	10.7070070514593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACGGTCTTCGTTTCTG	6382	False	NA	NA	False	AGTAAA	-12	NA	68066085	68387731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_68066460_68197287_68197758_68239621_68239763_68368725_68368881_68383641_68383696_68387079
ENSMUSG00000024544.10_3	chr18	+	1904	7	NNC	ENSMUSG00000024544.10	novel	2495	6	NA	NA	-211	-891	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	4.61880215351701	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACGGTCTTCGTTTCTG	6413	False	NA	NA	False	AGTAAA	-12	NA	68066116	68387731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_68066460_68138755_68138845_68197287_68197758_68239621_68239763_68368725_68368881_68383641_68383696_68387079
ENSMUSG00000024556.5_0	chr18	-	1970	16	FSM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	0	668	0	-668	multi-exon	FALSE	canonical	3	442	junction_8	47.5095312074909	611	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTACGGTGTCATCTGTGG	371	False	NA	-5	True	AAAAAG	-14	NA	73948509	73903641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
ENSMUSG00000024558.13_0	chr18	-	4614	6	FSM	ENSMUSG00000024558.13	ENSMUST00000091851.10	4594	6	-25	5	-25	-5	multi-exon	FALSE	canonical	3	19	junction_5	8.45221864364617	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTCGTCAGGAATTGT	9793	False	NA	NA	False	AATAAA	-14	NA	74198025	74061561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_74064166_74066967_74067170_74068076_74068239_74070200_74070346_74102961_74104348_74197910
ENSMUSG00000024558.13_1	chr18	-	4812	6	NIC	ENSMUSG00000024558.13	novel	4594	6	NA	NA	3	-8	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	6.68131723539603	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAAATTCGTCAGGAAT	9391	False	NA	NA	False	AATAAA	-11	NA	74198427	74061564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_74064166_74066967_74067170_74068076_74068239_74070200_74070346_74102961_74104348_74198111
ENSMUSG00000024558.13_10	chr18	-	3703	5	ISM	ENSMUSG00000024558.13	ENSMUST00000091851.10	4594	6	94451	3	93914	-3	3prime_fragment	FALSE	canonical	3	32	junction_4	3.89711431702997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCGTCAGGAATTGTCA	NA	False	NA	NA	False	AATAAA	-16	NA	74103549	74061559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_74064166_74066967_74067170_74068076_74068239_74070200_74070346_74102961
ENSMUSG00000024558.13_13	chr18	-	2962	3	ISM	ENSMUSG00000024558.13	ENSMUST00000162863.8	4828	5	129228	8	129228	-8	3prime_fragment	FALSE	canonical	3	38	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAAATTCGTCAGGAAT	NA	False	NA	NA	False	AATAAA	-11	NA	74068235	74061564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_74064166_74066967_74067170_74068076
ENSMUSG00000024558.13_2	chr18	-	2740	2	ISM	ENSMUSG00000024558.13	ENSMUST00000162863.8	4828	5	130362	3	130362	-3	3prime_fragment	FALSE	canonical	3	38	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCGTCAGGAATTGTCA	NA	False	NA	NA	False	AATAAA	-16	NA	74067101	74061559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_74064166_74066967
ENSMUSG00000024558.13_3	chr18	-	2356	1	ISM	ENSMUSG00000024558.13	ENSMUST00000162863.8	4828	5	133548	3	133548	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCGTCAGGAATTGTCA	1754	False	NA	NA	False	AATAAA	-16	NA	74063915	74061559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_74061600_74063900
ENSMUSG00000024560.8_0	chr18	+	2523	15	FSM	ENSMUSG00000024560.8	ENSMUST00000025444.8	2620	15	91	6	91	-6	multi-exon	TRUE	canonical	3	205	junction_6	27.3663729300567	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAACAAGGCTCTCTCTC	NA	False	NA	8	True	AATAAA	-11	NA	74349292	74354558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352310_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
ENSMUSG00000024560.8_1	chr18	+	2531	15	NNC	ENSMUSG00000024560.8	novel	2620	15	NA	NA	92	-9	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_8	60.669605408377	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACCAACAAGGCTCTCT	NA	False	NA	5	True	AATAAA	-8	NA	74349293	74354555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352322_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
ENSMUSG00000024561.12_0	chr18	+	2925	16	FSM	ENSMUSG00000024561.12	ENSMUST00000224047.2	2838	16	-88	1	28	-1	multi-exon	FALSE	canonical	3	24	junction_11	21.6794833886788	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74401273	74415755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
ENSMUSG00000024561.12_2	chr18	+	4669	16	NIC	ENSMUSG00000024561.12	novel	2838	16	NA	NA	34	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	19.7033556081755	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTATGTTAGTGTTTC	NA	False	NA	NA	False	TTTAAA	-17	NA	74401279	74414305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749
ENSMUSG00000024561.12_3	chr18	+	2735	15	FSM	ENSMUSG00000024561.12	ENSMUST00000097530.5	2833	15	49	49	49	-2	multi-exon	FALSE	canonical	3	25	junction_10	20.6853245819645	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74401294	74415754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
ENSMUSG00000024561.12_40	chr18	+	3348	1	NIC	ENSMUSG00000024561.12	novel	2908	16	NA	NA	2703	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74412407	74415755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_74412400_74415800
ENSMUSG00000024561.12_6	chr18	+	4480	15	NIC	ENSMUSG00000024561.12	novel	2833	15	NA	NA	55	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_10	18.2702222320409	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTATGTTAGTGTTTC	NA	False	NA	NA	False	TTTAAA	-17	NA	74401300	74414305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749
ENSMUSG00000024563.17_0	chr18	+	2096	11	FSM	ENSMUSG00000024563.17	ENSMUST00000168423.9	8089	11	317	5676	-149	-7	multi-exon	FALSE	canonical	3	248	junction_5	13.3850663054017	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAAGTGGATTAACTTG	NA	False	NA	2	True	AATAAA	-15	NA	76374967	76438358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
ENSMUSG00000024563.17_20	chr18	+	1960	11	NIC	ENSMUSG00000024563.17	novel	1305	8	NA	NA	-24	-143	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	75.1644197742522	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCCGTTATTTTTGTGTC	NA	False	NA	18	True	TATAAA	-29	NA	76375220	76438222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_76375304_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
ENSMUSG00000024563.17_31	chr18	+	3167	1	Genic_Genomic	ENSMUSG00000024563.17	novel	NA	NA	NA	NA	46077	772	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTACCATGTCATTATGGG	NA	False	NA	2	True	ATTAAA	-17	NA	76441639	76444806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_+_76441600_76444800
ENSMUSG00000024563.17_6	chr18	+	2010	10	FSM	ENSMUSG00000024563.17	ENSMUST00000091831.13	1645	10	191	-556	-154	-8	multi-exon	FALSE	canonical	3	36	junction_2	75.1282031834933	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGACAAGTGGATTAACTT	NA	False	NA	1	True	AATAAA	-14	NA	76374962	76438357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_76375051_76395510_76395799_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
ENSMUSG00000024563.17_9	chr18	+	7954	12	NNC	ENSMUSG00000024563.17	novel	8089	11	NA	NA	-153	776	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	78.3213342899537	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGTCATTATGGGATCC	NA	False	NA	6	True	ATTAAA	-21	NA	76374963	76444810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677_76440877_76441474
ENSMUSG00000024565.11_0	chr18	-	5030	3	FSM	ENSMUSG00000024565.11	ENSMUST00000238808.2	4214	3	-137	-679	98	679	multi-exon	FALSE	canonical	3	38	junction_2	5.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTGGTTGCAAATCTT	NA	False	NA	-3	True	AATAAA	-15	NA	81029888	81011757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_81013120_81014395_81017845_81029669
ENSMUSG00000024565.11_1	chr18	-	3298	3	FSM	ENSMUSG00000024565.11	ENSMUST00000235746.2	4254	3	1701	-745	1701	681	multi-exon	FALSE	canonical	3	26	junction_2	11.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGGTTGCAAATCTTAA	NA	False	NA	-1	True	AATAAA	-17	NA	81016545	81011755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_81013120_81014395_81014737_81014952
ENSMUSG00000024565.11_2	chr18	-	4814	4	FSM	ENSMUSG00000024565.11	ENSMUST00000057950.9	7079	4	100	2165	100	681	multi-exon	FALSE	canonical	3	26	junction_2	9.39266853573691	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGGTTGCAAATCTTAA	NA	False	NA	-1	True	AATAAA	-17	NA	81029886	81011755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_81013120_81014395_81014737_81014952_81017845_81029669
ENSMUSG00000024565.11_3	chr18	-	3195	2	ISM	ENSMUSG00000024565.11	ENSMUST00000235746.2	4254	3	3560	-2285	3560	-625	3prime_fragment	FALSE	canonical	3	49	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTCTGAATCGTGTTC	NA	False	NA	-10	True	AATAAA	-15	NA	81014686	81010215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_81013120_81014395
ENSMUSG00000024565.11_4	chr18	-	2522	1	ISM	ENSMUSG00000024565.11	ENSMUST00000057950.9	7079	4	17243	631	5503	-631	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTATTATTTCTGAATC	NA	False	NA	-16	True	AATAAA	-9	NA	81012743	81010221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_81010200_81012700
ENSMUSG00000024565.11_7	chr18	-	8482	2	NIC	ENSMUSG00000024565.11	novel	4214	3	NA	NA	87	-2	intron_retention	FALSE	canonical	3	38	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81029899	81009592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_81017845_81029669
ENSMUSG00000024566.11_7	chr18	-	4438	29	FSM	ENSMUSG00000024566.11	ENSMUST00000225980.2	5150	29	24	688	-2	-3	multi-exon	FALSE	canonical	3	102	junction_24	14.8266772117982	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCCTTTGACCTGAGCG	9770	False	NA	-33	True	AATAAA	-21	NA	80977249	80778292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_80779365_80781867_80782072_80782961_80783020_80793033_80793143_80795972_80796038_80796206_80796363_80797163_80797229_80797459_80797605_80799668_80799759_80801509_80801609_80805276_80805448_80806088_80806173_80808237_80808331_80808985_80809148_80820012_80820262_80822077_80822191_80838504_80838648_80851826_80851988_80879569_80879647_80887741_80887818_80890386_80890468_80901758_80901854_80912956_80913009_80920529_80920589_80935029_80935139_80952806_80952921_80956011_80956163_80960919_80961094_80977038
ENSMUSG00000024566.11_8	chr18	-	4471	30	FSM	ENSMUSG00000024566.11	ENSMUST00000091790.5	5357	30	-51	937	-2	-3	multi-exon	FALSE	canonical	3	35	junction_1	27.0288523341592	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCCTTTGACCTGAGCG	9770	False	NA	-33	True	AATAAA	-21	NA	80977249	80778292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_80779365_80780026_80780060_80781867_80782072_80782961_80783020_80793033_80793143_80795972_80796038_80796206_80796363_80797163_80797229_80797459_80797605_80799668_80799759_80801509_80801609_80805276_80805448_80806088_80806173_80808237_80808331_80808985_80809148_80820012_80820262_80822077_80822191_80838504_80838648_80851826_80851988_80879569_80879647_80887741_80887818_80890386_80890468_80901758_80901854_80912956_80913009_80920529_80920589_80935029_80935139_80952806_80952921_80956011_80956163_80960919_80961094_80977038
ENSMUSG00000024570.8_0	chr18	-	1355	6	FSM	ENSMUSG00000024570.8	ENSMUST00000025462.7	1377	6	22	0	22	0	multi-exon	FALSE	canonical	3	236	junction_3	30.0026665481587	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTTGTGTATACGCAC	NA	False	NA	-3	True	AATAAA	-20	NA	80243851	80235479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_80236098_80236446_80236515_80238233_80238319_80240464_80240578_80240878_80241099_80243600
ENSMUSG00000024571.16_0	chr18	+	1619	4	FSM	ENSMUSG00000024571.16	ENSMUST00000125127.8	1683	4	43	21	-5	-12	multi-exon	FALSE	canonical	3	1096	junction_3	900.996608699993	1032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATATAAAAA	NA	False	NA	NA	False	ATTAAA	-18	NA	80250055	80255926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80250117_80250368_80250559_80253276_80253346_80254627
ENSMUSG00000024571.16_10	chr18	+	1610	4	FSM	ENSMUSG00000024571.16	ENSMUST00000025463.14	1650	4	28	12	0	-12	multi-exon	FALSE	canonical	3	109	junction_1	503.796475661441	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATATAAAAA	NA	False	NA	NA	False	ATTAAA	-18	NA	80250109	80255926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80250162_80250368_80250559_80253276_80253346_80254627
ENSMUSG00000024571.16_2	chr18	+	2902	3	FSM	ENSMUSG00000024571.16	ENSMUST00000145116.8	968	3	10	-1944	-6	-12	multi-exon	FALSE	canonical	3	1244	junction_2	916.5	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATATAAAAA	NA	False	NA	NA	False	ATTAAA	-18	NA	80250054	80255926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80250117_80250368_80250559_80253276
ENSMUSG00000024571.16_26	chr18	+	1069	1	ISM	ENSMUSG00000024571.16	ENSMUST00000156400.9	1649	4	4878	30	4383	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATATAAAAA	1558	False	NA	NA	False	ATTAAA	-18	NA	80254857	80255926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_80254900_80255900
ENSMUSG00000024576.15_0	chr18	+	2283	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165123.8	4083	10	43	1757	-1	0	multi-exon	FALSE	canonical	0	0	junction_9	613.012254927549	1329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTGAAATTTTTTTA	471	False	NA	27	True	ATTAAA	-20	NA	61688387	61721375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
ENSMUSG00000024576.15_1	chr18	+	2336	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165721.8	2323	10	5	-18	0	18	multi-exon	FALSE	canonical	3	816	junction_9	364.192494210831	979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACAACAAAATGCCTTGG	472	False	NA	45	True	ATTAAA	-38	NA	61688388	61721393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
ENSMUSG00000024576.15_130	chr18	+	1391	1	ISM	ENSMUSG00000024576.15	ENSMUST00000165123.8	4083	10	33397	0	5827	0	mono-exon	FALSE	NA	NA	NA	NA	NA	373	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGAGAGGCTGGTTGTCT	NA	False	NA	13	True	AATAAA	-16	NA	61721741	61723132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_61721700_61723100
ENSMUSG00000024576.15_5	chr18	+	2404	11	FSM	ENSMUSG00000024576.15	ENSMUST00000170862.8	2259	11	-23	-122	-2	0	multi-exon	TRUE	canonical	3	229	junction_5	708.334701959462	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTGAAATTTTTTTA	470	False	NA	27	True	ATTAAA	-20	NA	61688386	61721375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
ENSMUSG00000024576.15_8	chr18	+	2366	11	FSM	ENSMUSG00000024576.15	ENSMUST00000167187.8	1222	11	-371	-773	0	0	multi-exon	FALSE	canonical	0	0	junction_10	819.69914602859	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTGAAATTTTTTTA	472	False	NA	27	True	ATTAAA	-20	NA	61688388	61721375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
ENSMUSG00000024579.8_1	chr18	-	1994	6	FSM	ENSMUSG00000024579.8	ENSMUST00000025472.7	2017	6	18	5	-4	-5	multi-exon	FALSE	canonical	3	53	junction_4	12.1061967603372	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTACTTCTGACTTATTC	NA	False	NA	-6	True	TATAAA	-11	NA	61840688	61829912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_61831048_61831434_61831576_61832363_61832576_61835266_61835442_61836582_61836790_61840564
ENSMUSG00000024579.8_3	chr18	-	2033	7	NNC	ENSMUSG00000024579.8	novel	2017	6	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	34.3693177121688	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGACTTATTCTTTTT	NA	False	NA	-1	True	TATAAA	-16	NA	61840680	61829907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_61831048_61831434_61831576_61832363_61832576_61835266_61835442_61836423_61836466_61836582_61836790_61840564
ENSMUSG00000024579.8_6	chr18	-	653	1	ISM	ENSMUSG00000024579.8	ENSMUST00000025472.7	2017	6	10146	0	10124	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGACTTATTCTTTTT	NA	False	NA	-1	True	TATAAA	-16	NA	61830560	61829907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_61829900_61830600
ENSMUSG00000024580.9_1	chr18	-	2889	1	ISM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	10995	16	3894	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAGAAAAACACCTC	NA	False	NA	-18	True	AATATA	-30	NA	61848399	61845510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_61845500_61848400
ENSMUSG00000024580.9_2	chr18	-	3361	4	FSM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	10	667	10	-667	multi-exon	FALSE	canonical	3	248	junction_1	10.9645894689324	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGATTTGCCCAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	61859384	61846161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_61849199_61851824_61851907_61852772_61852927_61859296
ENSMUSG00000024581.14_0	chr18	+	3639	13	FSM	ENSMUSG00000024581.14	ENSMUST00000150267.2	1129	13	2	-2512	2	-6	multi-exon	FALSE	canonical	2	11	junction_10	86.248671487353	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAATGGTGTCAGTTTTA	NA	False	NA	0	True	AATAAA	-12	NA	63110973	63132515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63125411_63125562_63127382_63127463_63128033_63128164_63129887
ENSMUSG00000024581.14_1	chr18	+	3491	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	72	4	2	-4	multi-exon	FALSE	canonical	3	194	junction_8	19.1691039293584	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGGTGTCAGTTTTATT	NA	False	NA	2	True	AATAAA	-14	NA	63110973	63132517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
ENSMUSG00000024581.14_33	chr18	+	2408	1	ISM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	19208	4	7063	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGGTGTCAGTTTTATT	NA	False	NA	2	True	AATAAA	-14	NA	63130109	63132517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_63130100_63132500
ENSMUSG00000024583.4_2	chr18	-	1245	8	FSM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	84	3014	-31	-2	multi-exon	FALSE	canonical	3	853	junction_1	53.8088074120031	691	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTTAAGTCTTCGTCATT	NA	False	NA	-9	True	AATAAA	-17	NA	63825424	63797178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
ENSMUSG00000024587.11_2	chr18	-	2574	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	153	18	0	-7	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	4154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAACCAAAACACT	NA	False	NA	NA	False	AATAAA	-13	NA	64649570	64632735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
ENSMUSG00000024587.11_4	chr18	-	2571	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	109	7	0	-7	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	2556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAACCAAAACACT	NA	False	NA	NA	False	AATAAA	-13	NA	64649570	64632735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ENSMUSG00000024588.11_1	chr18	-	2187	11	FSM	ENSMUSG00000024588.11	ENSMUST00000236586.3	6571	11	36	4348	-1	0	multi-exon	FALSE	canonical	3	260	junction_4	29.1315979650963	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTGTACGCCTTCAT	NA	False	NA	-2	True	AATAAA	-18	NA	64622135	64590332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64616404_64616529_64621971
ENSMUSG00000024588.11_5	chr18	-	2062	10	FSM	ENSMUSG00000024588.11	ENSMUST00000025484.9	2059	10	-4	1	-4	-1	multi-exon	FALSE	canonical	3	22	junction_9	95.9785212597583	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTGCTGTGTACGCCT	NA	False	NA	-6	True	AATAAA	-14	NA	64622138	64590336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64621971
ENSMUSG00000024589.19_0	chr18	+	3513	30	FSM	ENSMUSG00000024589.19	ENSMUST00000236736.2	4802	30	-247	1536	6	0	multi-exon	TRUE	canonical	3	102	junction_13	18.1799042339286	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATGAATGGAATTAATCA	NA	False	NA	NA	False	AATAAA	-22	NA	65020781	65346262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_65021167_65130418_65130493_65207794_65207877_65210768_65210808_65213088_65213143_65276866_65276918_65288326_65288389_65288716_65288820_65290915_65291083_65294585_65294722_65296065_65296243_65298642_65298718_65305345_65305478_65305986_65306107_65307115_65307314_65311989_65312068_65314398_65314454_65319396_65319456_65324507_65324574_65326146_65326377_65328130_65328253_65328985_65329057_65331701_65331798_65336946_65337021_65338703_65338765_65341119_65341180_65341462_65341571_65342723_65342821_65343333_65343407_65345854
ENSMUSG00000024590.9_0	chr18	+	2828	11	FSM	ENSMUSG00000024590.9	ENSMUST00000025486.9	2843	11	11	4	11	-4	multi-exon	FALSE	canonical	3	1085	junction_1	118.73230394463	2365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCTACTGTTCTTTTTA	NA	False	NA	16	True	AATAAA	-15	NA	56840895	56886492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_56841547_56861472_56861630_56862358_56862485_56864041_56864213_56866283_56866410_56872892_56873114_56873758_56873985_56876282_56876388_56881048_56881169_56882770_56882882_56885678
ENSMUSG00000024592.16_0	chr18	-	2304	5	FSM	ENSMUSG00000024592.16	ENSMUST00000025488.15	2400	5	8	88	-6	-88	multi-exon	FALSE	canonical	3	74	junction_4	15.0228991875736	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGACACTGTTGTATGGC	NA	False	NA	NA	False	NA	NA	NA	57108432	57088992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455_57106557_57108405
ENSMUSG00000024592.16_1	chr18	-	1105	4	ISM	ENSMUSG00000024592.16	ENSMUST00000025488.15	2400	5	1882	1262	1760	519	3prime_fragment	FALSE	canonical	3	83	junction_1	12.0277457017791	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGTGTTTTTGTACTC	NA	False	NA	NA	False	TATAAA	-6	NA	57106558	57090166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455
ENSMUSG00000024592.16_16	chr18	-	1359	1	ISM	ENSMUSG00000024592.16	ENSMUST00000025488.15	2400	5	18170	7	18048	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCACCAAAAACTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	57090270	57088911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_57088900_57090300
ENSMUSG00000024592.16_2	chr18	-	2311	5	NIC	ENSMUSG00000024592.16	novel	726	6	NA	NA	9	-90	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	31.2329953734828	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATGGACACTGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	57108417	57088994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455_57106557_57108381
ENSMUSG00000024592.16_8	chr18	-	1717	4	NIC	ENSMUSG00000024592.16	novel	726	6	NA	NA	15	502	intron_retention	FALSE	canonical	3	31	junction_3	36.0585942907128	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTTATATAAAGTATTAAA	NA	False	NA	NA	False	CATAAA	-6	NA	57108411	57090183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_57091652_57095472_57095591_57106455_57106557_57108381
ENSMUSG00000024594.10_1	chr18	+	1669	9	FSM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	6	3355	1	366	multi-exon	FALSE	canonical	3	500	junction_4	197.841121547064	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAATAGATCCTCTTT	NA	False	NA	NA	False	AATAAA	-25	NA	57487818	57522673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_57487964_57495504_57495622_57496147_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ENSMUSG00000024594.10_32	chr18	+	4017	5	FSM	ENSMUSG00000024594.10	ENSMUST00000238057.2	523	5	-12	-3482	-12	-236	multi-exon	FALSE	canonical	3	123	junction_1	350.033123432626	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-36	NA	57506951	57525789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ENSMUSG00000024594.10_33	chr18	+	4067	5	NIC	ENSMUSG00000024594.10	novel	523	5	NA	NA	-12	-242	combination_of_known_junctions	FALSE	canonical	3	294	junction_1	276.069284781918	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATTTGGCAAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-30	NA	57506951	57525783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ENSMUSG00000024594.10_45	chr18	+	3227	1	ISM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	34752	237	8692	-234	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-38	NA	57522564	57525791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_57522600_57525800
ENSMUSG00000024597.12_0	chr18	+	6695	27	FSM	ENSMUSG00000024597.12	ENSMUST00000115366.3	6520	27	-191	16	-191	-16	multi-exon	TRUE	canonical	3	112	junction_7	17.8975139591274	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTTTAATACTTACTCT	NA	False	NA	9	True	AATAAA	-16	NA	58011558	58079877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_58012617_58029353_58029474_58030415_58030492_58031130_58031227_58032331_58032472_58033093_58033205_58034427_58034537_58037195_58037324_58037409_58037495_58039024_58039177_58043312_58043421_58044961_58045086_58045908_58046011_58047177_58047334_58048480_58048581_58052527_58052640_58054817_58054959_58059478_58059586_58063226_58063307_58065551_58065678_58068022_58068071_58069379_58069503_58070731_58070844_58073206_58073294_58074080_58074217_58074824_58074893_58076987
ENSMUSG00000024597.12_46	chr18	+	2176	1	ISM	ENSMUSG00000024597.12	ENSMUST00000115366.3	6520	27	65956	12	17429	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAATACTTACTCTTGCC	NA	False	NA	13	True	AATAAA	-20	NA	58077705	58079881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_58077700_58079900
ENSMUSG00000024598.10_0	chr18	-	3971	16	ISM	ENSMUSG00000024598.10	ENSMUST00000025497.8	11041	65	171143	1	-3366	-1	3prime_fragment	FALSE	canonical	0	0	junction_12	2.50333111406914	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTACGGCTGCGTTTCC	NA	False	NA	NA	False	AATAAA	-15	NA	58172416	58141695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_58143705_58145285_58145464_58146723_58146956_58151808_58151929_58153441_58153571_58154145_58154263_58156244_58156368_58158097_58158224_58159403_58159611_58160888_58161015_58168344_58168477_58168918_58169042_58170033_58170154_58170773_58170900_58171271_58171338_58172379
ENSMUSG00000024598.10_3	chr18	-	3921	15	ISM	ENSMUSG00000024598.10	ENSMUST00000025497.8	11041	65	172257	-21	-2252	21	3prime_fragment	FALSE	canonical	0	0	junction_12	2.57638411383878	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCCAATGGCTGGTCCA	NA	False	NA	NA	False	AATAAA	-37	NA	58171302	58141673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_58143705_58145285_58145464_58146723_58146956_58151808_58151929_58153441_58153571_58154145_58154263_58156244_58156368_58158097_58158224_58159403_58159611_58160888_58161015_58168344_58168477_58168918_58169042_58170033_58170154_58170773_58170900_58171271
ENSMUSG00000024601.10_0	chr18	+	3359	5	FSM	ENSMUSG00000024601.10	ENSMUST00000025503.10	3377	5	10	8	-4	-8	multi-exon	FALSE	canonical	3	445	junction_3	47.2175814713121	1074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTAAACAAGAAGGGTCC	NA	False	NA	NA	False	AATAAA	-10	NA	58792547	58813432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_58792870_58804279_58804400_58804519_58804724_58806321_58806439_58810836
ENSMUSG00000024601.10_1	chr18	+	4957	4	NIC	ENSMUSG00000024601.10	novel	3377	5	NA	NA	-4	-8	intron_retention	FALSE	canonical	3	482	junction_3	34.7658836600865	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTAAACAAGAAGGGTCC	NA	False	NA	NA	False	AATAAA	-10	NA	58792547	58813432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_58792870_58804279_58804400_58804519_58806439_58810836
ENSMUSG00000024601.10_16	chr18	+	2114	1	ISM	ENSMUSG00000024601.10	ENSMUST00000025503.10	3377	5	18785	4	18771	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACAAGAAGGGTCCTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	58811322	58813436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_58811300_58813400
ENSMUSG00000024603.9_0	chr18	+	3708	13	FSM	ENSMUSG00000024603.9	ENSMUST00000025505.7	3738	13	13	17	0	-17	multi-exon	FALSE	canonical	3	145	junction_9	21.4333592534835	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTCGTGTGTCTTCTGT	NA	False	NA	17	True	AATAAA	-7	NA	60659285	60691821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110_60677219_60678819_60678894_60679292_60679406_60679838_60679949_60683257_60683332_60684959_60685015_60685916_60686025_60688178_60688277_60689299
ENSMUSG00000024603.9_16	chr18	+	2019	1	ISM	ENSMUSG00000024603.9	ENSMUST00000025505.7	3738	13	30537	10	1586	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTTCTGTTTGGTTT	NA	False	NA	24	True	AATAAA	-14	NA	60689809	60691828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_60689800_60691800
ENSMUSG00000024604.8_0	chr18	+	2089	11	FSM	ENSMUSG00000024604.8	ENSMUST00000025506.7	2210	11	33	88	1	-88	multi-exon	FALSE	canonical	3	519	junction_10	72.8288404411329	776	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTGCTGGACTTATGT	NA	False	NA	15	True	ATTAAA	-16	NA	60693840	60705794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689_60698791_60699424_60699598_60700442_60700644_60702428_60702594_60703852_60703942_60704071_60704204_60704894
ENSMUSG00000024608.12_2	chr18	+	538	5	FSM	ENSMUSG00000024608.12	ENSMUST00000025511.11	597	5	57	2	-12	-1	multi-exon	FALSE	canonical	3	20921	junction_1	2863.01274883644	4420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTGGTTCTGGTGTTGT	NA	False	NA	66	True	AATAAA	-16	NA	60907724	60911616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUSG00000024608.12_5	chr18	+	506	4	FSM	ENSMUSG00000024608.12	ENSMUST00000122279.2	667	4	160	1	160	-1	multi-exon	FALSE	canonical	3	24831	junction_3	1445.1337500576	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTGGTTCTGGTGTTGT	NA	False	NA	66	True	AATAAA	-16	NA	60909470	60911616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUSG00000024610.16_0	chr18	+	1364	8	FSM	ENSMUSG00000024610.16	ENSMUST00000050487.16	1224	8	-144	4	-144	2	multi-exon	FALSE	canonical	3	17	junction_2	5.45108115095397	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTCTTGCTTCTGCCTC	NA	False	NA	3	True	AATAAA	-13	NA	60936775	60945720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_60937083_60940979_60941150_60941303_60941384_60942099_60942163_60943053_60943147_60943399_60943491_60944930_60944994_60945223
ENSMUSG00000024610.16_1	chr18	+	1559	9	FSM	ENSMUSG00000024610.16	ENSMUST00000097563.9	1410	9	-149	0	-149	0	multi-exon	FALSE	canonical	1	2	junction_6	11.7020297384685	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACACTCTTGCTTCTGCC	NA	False	NA	1	True	AATAAA	-11	NA	60936770	60945718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_60937083_60940979_60941150_60941303_60941384_60942099_60942163_60943053_60943147_60943399_60943491_60944365_60944558_60944930_60944994_60945223
ENSMUSG00000024610.16_3	chr18	+	1261	8	ISM	ENSMUSG00000024610.16	ENSMUST00000167610.2	1345	10	4025	13	3976	-13	intron_retention	FALSE	canonical	1	2	junction_5	12.4408806040441	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGGAAGAAAGTAGAACAC	NA	False	NA	-12	True	NA	NA	NA	60940952	60945705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_60941150_60941303_60941384_60942099_60942163_60943053_60943147_60943399_60943491_60944365_60944558_60944930_60944994_60945223
ENSMUSG00000024613.17_0	chr18	-	4481	25	FSM	ENSMUSG00000024613.17	ENSMUST00000176630.8	4529	25	39	9	-3	-9	multi-exon	FALSE	canonical	2	677	junction_9	198.19802369656	1048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATAAAGGTTTGCCTTC	NA	False	NA	-27	True	AATAAA	-8	NA	60982004	60946835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
ENSMUSG00000024613.17_1	chr18	-	4591	26	FSM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	-5	9	-5	-9	multi-exon	FALSE	canonical	2	549	junction_9	234.649375878139	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATAAAGGTTTGCCTTC	NA	False	NA	-27	True	AATAAA	-8	NA	60982006	60946835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
ENSMUSG00000024614.8_1	chr18	+	3558	16	FSM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	62	991	12	-991	multi-exon	FALSE	canonical	3	189	junction_13	15.4033185457622	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTCATGTGCTTTTCTT	4804	False	NA	112	True	CATAAA	-19	NA	90528339	90560400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555329_90556622_90556692_90558062
ENSMUSG00000024614.8_36	chr18	+	2670	1	ISM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	30426	18	3526	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACATCATTGCATAATT	NA	False	NA	7	True	AATAAA	-7	NA	90558703	90561373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_90558700_90561400
ENSMUSG00000024619.9_0	chr18	-	1767	3	FSM	ENSMUSG00000024619.9	ENSMUST00000025521.9	1750	3	-20	3	-20	-3	multi-exon	FALSE	canonical	3	995	junction_1	57.5	1426	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCGCTGCCATCCTTTCT	7734	False	NA	-8	True	ATTAAA	-19	NA	61169291	61151936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_61153014_61153445_61153592_61168747
ENSMUSG00000024620.12_1	chr18	+	5417	23	NNC	ENSMUSG00000024620.12	novel	5407	23	NA	NA	-17	1	at_least_one_novel_splicesite	TRUE	canonical	1	5	junction_6	4.07370118225601	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAACCGATTTCTCAGG	NA	False	NA	NA	False	ATTAAA	-16	NA	61178204	61218129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_61178645_61193215_61193262_61194276_61194598_61196938_61197206_61197868_61197997_61198076_61198252_61198786_61198980_61199569_61199686_61201167_61201292_61201816_61202029_61204732_61204828_61205701_61205835_61206312_61206418_61206699_61206811_61209590_61209751_61210689_61210851_61211600_61211720_61211949_61212073_61212695_61212808_61213367_61213468_61214026_61214133_61214888_61215122_61216292
ENSMUSG00000024620.12_11	chr18	+	3029	10	ISM	ENSMUSG00000024620.12	ENSMUST00000115274.2	5423	24	28448	12	28448	-12	3prime_fragment	FALSE	canonical	1	8	junction_3	4.21637021355784	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGCTTCTCACTGAATAA	NA	False	NA	NA	False	ATTAAA	-3	NA	61206719	61218116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_61206811_61209590_61209751_61210689_61210851_61211600_61211720_61211949_61212073_61212695_61212808_61213367_61213468_61214026_61214133_61214888_61215122_61216292
ENSMUSG00000024620.12_3	chr18	+	5399	23	FSM	ENSMUSG00000024620.12	ENSMUST00000025522.11	5407	23	4	4	4	1	multi-exon	FALSE	canonical	1	5	junction_6	4.00748267062652	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAACCGATTTCTCAGG	NA	False	NA	NA	False	ATTAAA	-16	NA	61178225	61218129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_61178645_61193215_61193262_61194276_61194598_61196938_61197206_61197868_61197997_61198076_61198252_61198786_61198980_61199569_61199686_61201167_61201292_61201813_61202029_61204732_61204828_61205701_61205835_61206312_61206418_61206699_61206811_61209590_61209751_61210689_61210851_61211600_61211720_61211949_61212073_61212695_61212808_61213367_61213468_61214026_61214133_61214888_61215122_61216292
ENSMUSG00000024620.12_4	chr18	+	4053	17	NNC	ENSMUSG00000024620.12	novel	5407	23	NA	NA	20500	-1	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	4.09219913371771	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAATAACCGATTTCTCA	NA	False	NA	NA	False	ATTAAA	-14	NA	61198771	61218127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_61198980_61199569_61199686_61201167_61201292_61201816_61202029_61204732_61204828_61205701_61205835_61206312_61206418_61206699_61206811_61209590_61209751_61210689_61210851_61211600_61211720_61211949_61212073_61212695_61212808_61213367_61213468_61214026_61214133_61214888_61215122_61216292
ENSMUSG00000024620.12_5	chr18	+	4053	17	ISM	ENSMUSG00000024620.12	ENSMUST00000115274.2	5423	24	20503	1	20503	-1	3prime_fragment	FALSE	canonical	1	6	junction_3	3.98434436262731	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAATAACCGATTTCTCA	NA	False	NA	NA	False	ATTAAA	-14	NA	61198774	61218127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_61198980_61199569_61199686_61201167_61201292_61201813_61202029_61204732_61204828_61205701_61205835_61206312_61206418_61206699_61206811_61209590_61209751_61210689_61210851_61211600_61211720_61211949_61212073_61212695_61212808_61213367_61213468_61214026_61214133_61214888_61215122_61216292
ENSMUSG00000024622.9_0	chr18	-	5173	20	FSM	ENSMUSG00000024622.9	ENSMUST00000235480.2	5131	20	-32	-10	-1	-5	multi-exon	FALSE	canonical	3	101	junction_18	18.508813502905	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGCAAGAGCCTGTTCA	5845	False	NA	-10	True	AATAAA	-24	NA	61310101	61264353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_61265668_61266923_61267134_61268542_61268660_61269298_61269433_61270474_61270695_61273862_61274048_61274730_61274863_61279500_61279629_61280318_61280621_61283440_61283591_61285256_61285356_61288099_61288198_61288331_61288505_61290414_61290834_61295968_61296101_61298556_61298656_61300267_61300766_61304279_61304455_61305222_61305359_61309649
ENSMUSG00000024622.9_3	chr18	-	5076	21	FSM	ENSMUSG00000024622.9	ENSMUST00000091884.6	5103	21	22	5	0	-5	multi-exon	FALSE	canonical	3	70	junction_14	23.3398264775041	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGCAAGAGCCTGTTCA	5846	False	NA	-10	True	AATAAA	-24	NA	61310100	61264353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_61265668_61266923_61267134_61268542_61268660_61269298_61269433_61270474_61270695_61273862_61274048_61274730_61274863_61279500_61279629_61280318_61280621_61283440_61283591_61285256_61285356_61288099_61288198_61288331_61288505_61290414_61290591_61290686_61290834_61295968_61296101_61298556_61298656_61300267_61300766_61304279_61304455_61305222_61305359_61309649
ENSMUSG00000024639.6_0	chr19	+	5646	7	FSM	ENSMUSG00000024639.6	ENSMUST00000025541.6	5644	7	-13	11	-13	-11	multi-exon	FALSE	canonical	3	23	junction_6	6.07590871118606	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTAATGTATATCGCTGC	NA	False	NA	9	True	AATAAA	-13	NA	16110181	16364816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_16110826_16196951_16197137_16293380_16293536_16309440_16309570_16312344_16312475_16355520_16355675_16360567
ENSMUSG00000024639.6_3	chr19	+	9861	4	ISM	ENSMUSG00000024639.6	ENSMUST00000025541.6	5644	7	194056	2	107255	-2	3prime_fragment	FALSE	canonical	3	23	junction_3	5.43650214343336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCGCTGCTCTTCTTAA	NA	False	NA	18	True	AATAAA	-22	NA	16304250	16364825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_16309570_16312344_16312475_16355520_16355675_16360567
ENSMUSG00000024639.6_4	chr19	+	4504	3	ISM	ENSMUSG00000024639.6	ENSMUST00000025541.6	5644	7	202175	15	115374	-15	3prime_fragment	FALSE	canonical	3	23	junction_2	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATTGTAATGTATATCG	NA	False	NA	5	True	AATAAA	-9	NA	16312369	16364812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_16312475_16355520_16355675_16360567
ENSMUSG00000024639.6_5	chr19	+	4314	2	ISM	ENSMUSG00000024639.6	ENSMUST00000025541.6	5644	7	245419	7	158618	-7	3prime_fragment	FALSE	canonical	3	23	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTATATCGCTGCTCTT	5992	False	NA	13	True	AATAAA	-17	NA	16355613	16364820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_16355675_16360567
ENSMUSG00000024639.6_6	chr19	+	2413	1	ISM	ENSMUSG00000024639.6	ENSMUST00000025541.6	5644	7	252214	6	165413	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTATATCGCTGCTCTTC	3098	False	NA	14	True	AATAAA	-18	NA	16362408	16364821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_16362400_16364800
ENSMUSG00000024640.10_1	chr19	-	2085	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	77	455	-52	-3	multi-exon	TRUE	canonical	3	2829	junction_2	225.154079188008	4438	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCATTCATTGCCTGTG	NA	False	NA	-20	True	ATTAAA	-14	NA	15902346	15882496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
ENSMUSG00000024642.18_2	chr19	-	4543	20	FSM	ENSMUSG00000024642.18	ENSMUST00000052011.15	4545	20	2	0	2	0	multi-exon	FALSE	canonical	3	109	junction_14	23.8865044942308	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGATTATTTTCTAATT	NA	False	NA	-16	True	ATTAAA	-15	NA	14575413	14425513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_14427206_14429006_14429084_14429427_14429579_14429783_14429932_14430942_14431191_14432104_14432355_14441672_14441750_14442107_14442302_14442649_14442783_14443912_14444066_14444543_14444598_14445515_14445636_14493722_14493740_14495135_14495338_14522151_14522227_14541752_14541816_14571747_14571793_14572953_14573018_14574120_14574219_14574731
ENSMUSG00000024642.18_3	chr19	-	4546	20	NNC	ENSMUSG00000024642.18	novel	4545	20	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_14	32.1687896093519	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGATTATTTTCTAATT	NA	False	NA	-16	True	ATTAAA	-15	NA	14575413	14425513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_14427206_14429006_14429084_14429427_14429579_14429783_14429932_14430942_14431191_14432104_14432355_14441672_14441750_14442107_14442302_14442649_14442783_14443912_14444066_14444543_14444598_14445515_14445636_14493722_14493740_14495135_14495341_14522151_14522227_14541752_14541816_14571747_14571793_14572953_14573018_14574120_14574219_14574731
ENSMUSG00000024642.18_9	chr19	-	4471	19	NNC	ENSMUSG00000024642.18	novel	4545	20	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_14	39.6848697728604	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGATTATTTTCTAATT	NA	False	NA	-16	True	ATTAAA	-15	NA	14575413	14425513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_14427206_14429006_14429084_14429427_14429579_14429783_14429932_14430942_14431191_14432104_14432355_14441672_14441750_14442107_14442302_14442649_14442783_14443912_14444066_14444543_14444598_14445515_14445636_14493722_14493740_14495135_14495341_14541752_14541816_14571747_14571793_14572953_14573018_14574120_14574219_14574731
ENSMUSG00000024644.18_0	chr18	-	2055	12	FSM	ENSMUSG00000024644.18	ENSMUST00000025546.17	2124	12	64	5	-11	-1	multi-exon	FALSE	canonical	3	418	junction_11	64.2627612178223	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACTGCCGTGGTCTGAC	NA	False	NA	-3	True	AATAAA	-20	NA	84703763	84685594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962_84700053_84703727
ENSMUSG00000024644.18_1	chr18	-	2020	11	FSM	ENSMUSG00000024644.18	ENSMUST00000168419.3	2152	11	131	1	131	-1	multi-exon	FALSE	canonical	3	554	junction_9	38.6638073655454	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACTGCCGTGGTCTGAC	NA	False	NA	-3	True	AATAAA	-20	NA	84700053	84685594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962
ENSMUSG00000024645.6_0	chr18	-	2586	3	NIC	ENSMUSG00000024645.6	novel	2503	4	NA	NA	2	0	intron_retention	FALSE	canonical	3	61	junction_2	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGTTAAAAGCATTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	84969636	84965412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_84965871_84965958_84967578_84969127
ENSMUSG00000024645.6_1	chr18	-	1302	6	FSM	ENSMUSG00000024645.6	ENSMUST00000025547.4	2418	6	17	1099	0	0	multi-exon	FALSE	canonical	3	52	junction_4	6.15142259969188	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGATGTTAAAAGCATTT	NA	False	NA	NA	False	AATAAA	-12	NA	84969632	84965414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_84965871_84965958_84966065_84966147_84966222_84967318_84967417_84967514_84967578_84969127
ENSMUSG00000024645.6_2	chr18	-	490	2	FSM	ENSMUSG00000024645.6	ENSMUST00000235629.2	673	2	189	-6	189	0	multi-exon	FALSE	canonical	3	66	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAGCATTTTTATTTAC	NA	False	NA	NA	False	AATAAA	-20	NA	84965984	84965406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_84965871_84965958
ENSMUSG00000024645.6_6	chr18	-	491	1	NIC	ENSMUSG00000024645.6	novel	2418	6	NA	NA	75	55	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAACCATGAAATG	NA	False	NA	NA	False	NA	NA	NA	84966098	84965607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_84965600_84966100
ENSMUSG00000024646.15_1	chr18	+	793	5	FSM	ENSMUSG00000024646.15	ENSMUST00000160180.9	833	5	32	8	-7	1	multi-exon	FALSE	canonical	3	946	junction_4	54.2425110038243	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCATATGTGTCTGTCTG	NA	False	NA	11	True	AATATA	-16	NA	84869494	84897988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_84869733_84889629_84889759_84891264_84891295_84895951_84895987_84897627
ENSMUSG00000024654.9_0	chr19	-	1975	7	FSM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	42	2178	42	-2178	multi-exon	FALSE	canonical	3	393	junction_3	31.0344790336311	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAAAAGAGTGTGGTTA	NA	False	NA	NA	False	AATAAA	-12	NA	9112958	9089409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_9090573_9091547_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
ENSMUSG00000024659.16_0	chr19	-	1393	13	FSM	ENSMUSG00000024659.16	ENSMUST00000025561.8	1674	13	274	7	3	-5	multi-exon	FALSE	canonical	3	18	junction_4	3.1446603773522	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACAATTGGTGTGTCATT	7279	False	NA	-5	True	AATAAA	-16	NA	20368034	20350798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_20351135_20352588_20352712_20354015_20354075_20354970_20355067_20355759_20355854_20357012_20357070_20357703_20357784_20359413_20359505_20360225_20360340_20361120_20361216_20361838_20361948_20362056_20362137_20367975
ENSMUSG00000024660.10_0	chr19	-	3063	18	FSM	ENSMUSG00000024660.10	ENSMUST00000025562.9	3236	18	66	107	4	-61	multi-exon	FALSE	canonical	3	363	junction_14	47.6890156590894	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGAATGACTTTTAGTTT	NA	False	NA	-27	True	AATAAA	-17	NA	9876849	9849766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
ENSMUSG00000024660.10_13	chr19	-	3075	19	NIC	ENSMUSG00000024660.10	novel	3236	18	NA	NA	4	-61	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	145.134516148908	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGAATGACTTTTAGTTT	NA	False	NA	-27	True	AATAAA	-17	NA	9876849	9849766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9860555_9860568_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
ENSMUSG00000024660.10_3	chr19	-	2193	15	ISM	ENSMUSG00000024660.10	ENSMUST00000025562.9	3236	18	6000	107	1909	-61	3prime_fragment	FALSE	canonical	3	363	junction_14	48.9816708742429	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGAATGACTTTTAGTTT	NA	False	NA	-27	True	AATAAA	-17	NA	9870915	9849766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636
ENSMUSG00000024661.8_0	chr19	+	863	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	60	6	2	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	1955	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTTTCTTTGTGATT	4929	False	NA	17	True	AATAAA	-15	NA	9960069	9962456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
ENSMUSG00000024663.21_0	chr19	+	2164	10	FSM	ENSMUSG00000024663.21	ENSMUST00000113161.10	5146	10	60	2922	-12	0	multi-exon	FALSE	canonical	3	20	junction_4	9.36897954837013	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCTAGGCGGCAGTGGC	4027	False	NA	2	True	AATAAA	-17	NA	9995616	10012819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
ENSMUSG00000024663.21_1	chr19	+	1947	9	FSM	ENSMUSG00000024663.21	ENSMUST00000117641.8	2004	9	57	0	-14	0	multi-exon	FALSE	canonical	3	22	junction_4	8.51377560192891	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCTAGGCGGCAGTGGC	4025	False	NA	2	True	AATAAA	-17	NA	9995614	10012819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
ENSMUSG00000024663.21_8	chr19	+	2291	10	FSM	ENSMUSG00000024663.21	ENSMUST00000149967.9	2305	10	7	7	7	-1	multi-exon	FALSE	canonical	0	0	junction_1	15.1787700993327	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGCTAGGCGGCAGTGG	825	False	NA	1	True	AATAAA	-16	NA	9992414	10012818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_9992650_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
ENSMUSG00000024664.6_0	chr19	+	1755	12	FSM	ENSMUSG00000024664.6	ENSMUST00000115995.4	3687	12	69	1863	-27	3	multi-exon	TRUE	canonical	0	0	junction_1	0.642824346533225	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTTGGACTTTCATGAA	731	False	NA	NA	False	NA	NA	NA	10019001	10035611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10019321_10029565_10029677_10030199_10030398_10031383_10031486_10031590_10031714_10031969_10032031_10032470_10032548_10032960_10033059_10033354_10033452_10033580_10033661_10033788_10033915_10035248
ENSMUSG00000024665.9_0	chr19	-	1290	1	ISM	ENSMUSG00000024665.9	ENSMUST00000025567.9	3150	12	37665	27	7106	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTAATTTT	NA	False	NA	-31	True	NA	NA	NA	10041445	10040155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10040200_10041400
ENSMUSG00000024665.9_1	chr19	-	2974	12	FSM	ENSMUSG00000024665.9	ENSMUST00000025567.9	3150	12	145	31	145	-31	multi-exon	TRUE	canonical	3	359	junction_1	25.8738196920081	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAAAAAAAAGTAA	10016	False	NA	-35	True	NA	NA	NA	10078965	10040159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
ENSMUSG00000024666.7_0	chr19	-	1605	5	FSM	ENSMUSG00000024666.7	ENSMUST00000025568.3	1590	5	-22	7	-22	-5	multi-exon	FALSE	canonical	3	102	junction_4	27.5896266738062	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTCTGTCTTGGTGTCT	1488	False	NA	-11	True	AATAAA	-8	NA	10554748	10547848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554447
ENSMUSG00000024666.7_1	chr19	-	1306	4	ISM	ENSMUSG00000024666.7	ENSMUST00000236099.2	1529	5	1574	7	1568	-5	3prime_fragment	FALSE	canonical	3	144	junction_3	12.0277457017791	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTCTGTCTTGGTGTCT	3359	False	NA	-11	True	AATAAA	-8	NA	10552877	10547848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603
ENSMUSG00000024666.7_10	chr19	-	5069	2	NIC	ENSMUSG00000024666.7	novel	1593	4	NA	NA	-18	-5	intron_retention	FALSE	canonical	3	102	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTCTGTCTTGGTGTCT	1747	False	NA	-11	True	AATAAA	-8	NA	10554489	10547848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_10552876_10554447
ENSMUSG00000024666.7_2	chr19	-	1526	5	FSM	ENSMUSG00000024666.7	ENSMUST00000236099.2	1529	5	3	0	3	0	multi-exon	FALSE	canonical	3	12	junction_4	65.3543227338483	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1788	False	NA	-4	True	AATAAA	-15	NA	10554448	10547841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554233
ENSMUSG00000024666.7_3	chr19	-	1416	5	NIC	ENSMUSG00000024666.7	novel	1529	5	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	43	junction_4	52.1464284491278	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTCTGTCTTGGTGTCT	1792	False	NA	-11	True	AATAAA	-8	NA	10554444	10547848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554332
ENSMUSG00000024666.7_4	chr19	-	1538	5	FSM	ENSMUSG00000024666.7	ENSMUST00000235990.2	1260	5	-283	5	-28	-5	multi-exon	FALSE	canonical	3	27	junction_3	58.8175143983491	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTCTGTCTTGGTGTCT	1482	False	NA	-11	True	AATAAA	-8	NA	10554754	10547848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10548633_10548892_10548969_10552200_10552300_10552603_10552876_10554447
ENSMUSG00000024666.7_7	chr19	-	1605	4	NIC	ENSMUSG00000024666.7	novel	1260	5	NA	NA	2	-8	intron_retention	FALSE	canonical	3	27	junction_2	63.9739530329857	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTCTGTCTGTCTTGGTG	1787	False	NA	-14	True	AATAAA	-5	NA	10554449	10547851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_10548969_10552200_10552300_10552603_10552876_10554332
ENSMUSG00000024667.13_1	chr19	-	1003	5	FSM	ENSMUSG00000024667.13	ENSMUST00000154383.2	927	5	8	-84	-7	2	multi-exon	FALSE	canonical	3	49	junction_4	15.1224171348366	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGGGCTGGTTGATTTT	NA	False	NA	-8	True	AATAAA	-12	NA	10533107	10527829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533076
ENSMUSG00000024667.13_2	chr19	-	1006	5	FSM	ENSMUSG00000024667.13	ENSMUST00000059582.9	999	5	19	-26	4	2	multi-exon	FALSE	canonical	3	35	junction_4	20.6079474960511	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGGGCTGGTTGATTTT	NA	False	NA	-8	True	AATAAA	-12	NA	10533096	10527829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
ENSMUSG00000024667.13_3	chr19	-	879	6	NIC	ENSMUSG00000024667.13	novel	876	6	NA	NA	-7	2	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	28.4717403753266	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGGGCTGGTTGATTTT	NA	False	NA	-8	True	AATAAA	-12	NA	10533107	10527829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
ENSMUSG00000024668.9_0	chr19	-	1905	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	-33	1109	8	-2	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATATTATTGTTTGATCT	NA	False	NA	NA	False	AATAAA	-15	NA	10502512	10479006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
ENSMUSG00000024668.9_3	chr19	-	1744	4	FSM	ENSMUSG00000024668.9	ENSMUST00000235243.2	997	4	-47	-700	-17	-3	multi-exon	FALSE	canonical	3	36	junction_2	80.2426874480715	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATATTATTGTTTGATC	NA	False	NA	NA	False	AATAAA	-14	NA	10502503	10479007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10480494_10494343_10494454_10494683_10494751_10502422
ENSMUSG00000024668.9_5	chr19	-	2002	5	FSM	ENSMUSG00000024668.9	ENSMUST00000235853.2	2025	5	20	3	-14	-3	multi-exon	FALSE	canonical	2	8	junction_4	101.25802437338	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATATTATTGTTTGATC	NA	False	NA	NA	False	AATAAA	-14	NA	10502500	10479007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10498312_10498423_10502422
ENSMUSG00000024670.18_0	chr19	-	2164	9	FSM	ENSMUSG00000024670.18	ENSMUST00000025572.8	2173	9	8	1	8	-1	multi-exon	TRUE	canonical	1	1	junction_4	1.11102430216445	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAACTAGGCGTGTCTTG	8164	False	NA	NA	False	ATTAAA	-12	NA	10776100	10766710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10767608_10767932_10768035_10768279_10768535_10768745_10768818_10770191_10770309_10771505_10771602_10771927_10772069_10773689_10773753_10775679
ENSMUSG00000024670.18_2	chr19	-	1951	7	NIC	ENSMUSG00000024670.18	novel	2173	9	NA	NA	10	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	1.34370962471642	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTAGGCGTGTCTTGAC	8166	False	NA	NA	False	ATTAAA	-14	NA	10776098	10766708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_10767608_10767932_10768035_10768279_10768535_10768745_10768818_10771927_10772069_10773689_10773753_10775679
ENSMUSG00000024683.7_0	chr19	+	996	4	FSM	ENSMUSG00000024683.7	ENSMUST00000167199.3	1162	4	8	158	8	9	multi-exon	FALSE	canonical	3	302	junction_3	22.4499443206436	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTTCTCTTTGGTCAGT	169	False	NA	34	True	ATTAAA	-22	NA	11747762	11752166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511
ENSMUSG00000024687.12_0	chr19	+	4587	14	FSM	ENSMUSG00000024687.12	ENSMUST00000025590.11	4488	14	-106	7	-106	-7	multi-exon	FALSE	canonical	3	144	junction_3	15.1325504406969	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGCTATATTGTCTGAT	NA	False	NA	2	True	ATTAAA	-9	NA	11943198	11971469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_11943661_11948050_11948260_11951021_11951273_11955165_11955365_11955600_11955704_11955994_11956050_11956232_11956365_11961267_11961514_11961755_11961877_11965712_11965817_11966568_11966665_11967964_11968147_11968958_11969180_11969263
ENSMUSG00000024687.12_26	chr19	+	1530	1	ISM	ENSMUSG00000024687.12	ENSMUST00000025590.11	4488	14	26640	2	26640	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATATTGTCTGATTTGCT	4029	False	NA	7	True	ATTAAA	-14	NA	11969944	11971474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_11969900_11971500
ENSMUSG00000024691.14_0	chr19	+	3256	4	FSM	ENSMUSG00000024691.14	ENSMUST00000025595.5	3267	4	9	2	9	0	multi-exon	FALSE	canonical	3	71	junction_1	5.90668171555645	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGTTTTCTTTAGTTA	NA	False	NA	2	True	AATAAA	-11	NA	12550895	12567124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_12550945_12554453_12554535_12561286_12561487_12564198
ENSMUSG00000024691.14_4	chr19	+	2247	1	ISM	ENSMUSG00000024691.14	ENSMUST00000144662.8	3912	5	19318	6	13993	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTTTTCTTTAGTTATT	347	False	NA	4	True	AATAAA	-13	NA	12564879	12567126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_12564900_12567100
ENSMUSG00000024695.17_0	chr19	-	4858	11	FSM	ENSMUSG00000024695.17	ENSMUST00000038627.9	5531	11	673	0	673	0	multi-exon	FALSE	canonical	3	113	junction_5	14.0003571383019	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCTTGTTTCCTTTTAA	NA	False	NA	-4	True	AATAAA	-18	NA	12772817	12744383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_12747914_12748366_12748467_12752183_12752299_12753358_12753438_12753775_12753827_12754223_12754359_12755305_12755411_12755987_12756025_12756256_12756464_12767623_12767653_12772347
ENSMUSG00000024695.17_1	chr19	-	4001	6	ISM	ENSMUSG00000024695.17	ENSMUST00000038627.9	5531	11	19217	-76	13400	76	3prime_fragment	FALSE	canonical	3	113	junction_5	18.1813090837816	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGCAACTGGTCTTCCT	NA	False	NA	-7	True	AATAAA	-12	NA	12754273	12744307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_12747914_12748366_12748467_12752183_12752299_12753358_12753438_12753775_12753827_12754223
ENSMUSG00000024695.17_14	chr19	-	3584	2	ISM	ENSMUSG00000024695.17	ENSMUST00000038627.9	5531	11	25070	0	19253	0	3prime_fragment	FALSE	canonical	3	151	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCTTGTTTCCTTTTAA	NA	False	NA	-4	True	AATAAA	-18	NA	12748420	12744383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_12747914_12748366
ENSMUSG00000024695.17_2	chr19	-	2193	1	ISM	ENSMUSG00000024695.17	ENSMUST00000038627.9	5531	11	26914	0	21097	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCTTGTTTCCTTTTAA	NA	False	NA	-4	True	AATAAA	-18	NA	12746576	12744383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_12744400_12746600
ENSMUSG00000024697.5_0	chr19	+	2615	7	FSM	ENSMUSG00000024697.5	ENSMUST00000025602.4	3290	7	599	76	599	-76	multi-exon	FALSE	canonical	1	2	junction_2	2.3392781412697	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACCAACGATGATGTGCT	NA	False	NA	NA	False	AATACA	-14	NA	16413724	16588108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_16414182_16511076_16511262_16576303_16576459_16580627_16580757_16582326_16582457_16585346_16585501_16586703
ENSMUSG00000024712.10_0	chr19	+	2400	4	FSM	ENSMUSG00000024712.10	ENSMUST00000025617.4	2482	4	70	12	70	-12	multi-exon	FALSE	canonical	3	326	junction_3	47.0744091837593	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCCTGTCAACCTGAATC	1394	False	NA	7	True	AATAAA	-22	NA	17371476	17378701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_17371757_17372561_17372714_17375941_17376045_17376836
ENSMUSG00000024712.10_5	chr19	+	1425	1	ISM	ENSMUSG00000024712.10	ENSMUST00000025617.4	2482	4	5872	10	2478	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGTCAACCTGAATCCT	7196	False	NA	9	True	AATAAA	-24	NA	17377278	17378703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_17377300_17378700
ENSMUSG00000024713.17_0	chr19	-	3283	21	FSM	ENSMUSG00000024713.17	ENSMUST00000050715.10	5768	21	-2	2487	-2	2067	multi-exon	FALSE	canonical	0	0	junction_6	1.83303027798234	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAAAGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	17814998	17538024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_17538194_17541145_17541262_17542073_17542204_17542631_17542730_17545632_17545718_17549787_17549982_17553169_17553273_17558499_17558644_17563373_17563511_17571903_17572093_17573024_17573143_17595014_17595119_17619856_17619958_17632051_17632265_17652784_17652958_17655832_17655922_17689278_17689356_17692121_17692266_17729426_17729541_17770992_17771098_17814318
ENSMUSG00000024725.14_0	chr19	-	1229	10	FSM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	1	1496	1	-15	multi-exon	FALSE	canonical	3	989	junction_2	42.8315679128904	584	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGATTTTATTATCTGT	NA	False	NA	-17	True	AATAAA	-6	NA	18609152	18558187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
ENSMUSG00000024726.11_3	chr19	+	2079	8	FSM	ENSMUSG00000024726.11	ENSMUST00000025632.11	4518	8	27	2412	27	566	multi-exon	FALSE	canonical	3	696	junction_5	231.025928397305	1139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTTCGAATTAGAAATT	NA	False	NA	NA	False	AATAAA	-20	NA	18648154	18682152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_18648567_18655051_18655248_18656467_18656632_18667593_18667735_18668780_18668960_18671012_18671127_18680724_18680829_18681383
ENSMUSG00000024732.8_0	chr19	-	1654	4	FSM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	2	1347	2	-1347	multi-exon	FALSE	canonical	3	231	junction_1	21.483844059096	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAATCAAAA	NA	False	NA	-123	True	NA	NA	NA	10926628	10920191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641
ENSMUSG00000024732.8_2	chr19	-	1527	5	NNC	ENSMUSG00000024732.8	novel	3003	4	NA	NA	2	-1354	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	114.6799895361	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CGTATCTAAAAAAAAAAAAA	NA	False	NA	-130	True	NA	NA	NA	10926628	10920198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641_10926169_10926288
ENSMUSG00000024735.14_0	chr19	+	2093	16	FSM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	33	8	-13	-8	multi-exon	FALSE	canonical	3	125	junction_6	13.7346277707115	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTAAACAGTCAGCTTCT	NA	False	NA	7	True	ATTAAA	-13	NA	10872627	10882888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ENSMUSG00000024735.14_2	chr19	+	2153	16	FSM	ENSMUSG00000024735.14	ENSMUST00000179297.3	6035	16	-153	4035	-16	-8	multi-exon	FALSE	canonical	3	14	junction_3	36.1106940146852	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTAAACAGTCAGCTTCT	NA	False	NA	7	True	ATTAAA	-13	NA	10872624	10882888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876289_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ENSMUSG00000024735.14_22	chr19	+	326	1	ISM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	9973	3	4922	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTCAGCTTCTTGTGT	NA	False	NA	12	True	ATTAAA	-18	NA	10882567	10882893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_10882600_10882900
ENSMUSG00000024736.16_1	chr19	-	2709	8	ISM	ENSMUSG00000024736.16	ENSMUST00000025645.14	3657	11	4463	2	1661	-2	3prime_fragment	FALSE	canonical	3	47	junction_6	7.06818107248742	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTGTGACACTCTCTG	2671	False	NA	-1	True	AATAAA	-25	NA	10842841	10835187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10836516_10836927_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619
ENSMUSG00000024736.16_14	chr19	-	3162	10	ISM	ENSMUSG00000024736.16	ENSMUST00000025645.14	3657	11	2879	10	77	2	3prime_fragment	FALSE	canonical	3	39	junction_8	10.088497300281	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTGGTACTGCTGTGAC	1087	False	NA	-9	True	AATAAA	-17	NA	10844425	10835195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10836516_10836927_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619_10842952_10843832_10844052_10844293
ENSMUSG00000024736.16_2	chr19	-	3480	11	FSM	ENSMUSG00000024736.16	ENSMUST00000025645.14	3657	11	165	12	3	0	multi-exon	FALSE	canonical	3	39	junction_8	9.57131129992124	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATAGCTGGTACTGCTGTG	NA	False	NA	-11	True	AATAAA	-15	NA	10847139	10835197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10836516_10836927_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
ENSMUSG00000024736.16_20	chr19	-	1532	3	ISM	ENSMUSG00000024736.16	ENSMUST00000025645.14	3657	11	9796	11	364	1	3prime_fragment	FALSE	canonical	3	54	junction_1	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGCTGGTACTGCTGTGA	8004	False	NA	-10	True	AATAAA	-16	NA	10837508	10835196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10836516_10836927_10837120_10837487
ENSMUSG00000024736.16_3	chr19	-	3472	11	NNC	ENSMUSG00000024736.16	novel	3657	11	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_6	16.1496129984591	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATAGCTGGTACTGCTGTG	NA	False	NA	-11	True	AATAAA	-15	NA	10847128	10835197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_10836516_10836927_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841028_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
ENSMUSG00000024736.16_4	chr19	-	3907	10	FSM	ENSMUSG00000024736.16	ENSMUST00000120524.2	3895	10	-11	-1	-11	1	multi-exon	FALSE	canonical	3	39	junction_7	10.088497300281	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGCTGGTACTGCTGTGA	NA	False	NA	-10	True	AATAAA	-16	NA	10847153	10835196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
ENSMUSG00000024736.16_5	chr19	-	920	1	ISM	ENSMUSG00000024736.16	ENSMUST00000025645.14	3657	11	11189	10	1757	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTGGTACTGCTGTGAC	9397	False	NA	-9	True	AATAAA	-17	NA	10836115	10835195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10835200_10836100
ENSMUSG00000024738.7_0	chr19	-	1337	7	NIC	ENSMUSG00000024738.7	novel	1417	9	NA	NA	33	-1	intron_retention	FALSE	canonical	3	9	junction_1	1.82574185835055	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATACTAACGTCTGCTC	NA	False	NA	NA	False	AATAAA	-19	NA	10654148	10646320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_10646626_10646718_10647037_10649151_10649269_10651001_10651202_10652190_10652310_10652407_10652526_10653988
ENSMUSG00000024738.7_1	chr19	-	1281	8	ISM	ENSMUSG00000024738.7	ENSMUST00000025647.7	1417	9	1269	1	15	-1	3prime_fragment	FALSE	canonical	3	9	junction_1	1.72614942479922	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATACTAACGTCTGCTC	NA	False	NA	NA	False	AATAAA	-19	NA	10654166	10646320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10646626_10646718_10646818_10646891_10647037_10649151_10649269_10651001_10651202_10652190_10652310_10652407_10652526_10653988
ENSMUSG00000024740.11_5	chr19	+	4191	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	262	6	2	-6	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	6776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGAAACTCTTATTGGT	632	False	NA	50	True	AATAAA	-10	NA	10582952	10607177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
ENSMUSG00000024740.11_7	chr19	+	4227	28	NIC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	3	145	junction_5	848.081981892655	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGAAACTCTTATTGGT	632	False	NA	50	True	AATAAA	-10	NA	10582952	10607177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10587155_10587192_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
ENSMUSG00000024742.16_0	chr19	-	2172	2	FSM	ENSMUSG00000024742.16	ENSMUST00000025651.6	2341	2	159	10	-15	-6	multi-exon	FALSE	canonical	3	832	junction_1	0	1196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAGTGACCAGAATGTG	2189	False	NA	NA	False	AATAAA	-4	NA	10181273	10176511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10178462_10181051
ENSMUSG00000024742.16_1	chr19	-	2161	2	FSM	ENSMUSG00000024742.16	ENSMUST00000142241.2	2152	2	-15	6	-15	-6	multi-exon	FALSE	canonical	3	104	junction_1	0	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAGTGACCAGAATGTG	2189	False	NA	NA	False	AATAAA	-4	NA	10181273	10176511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10178462_10181062
ENSMUSG00000024742.16_2	chr19	-	2066	2	FSM	ENSMUSG00000024742.16	ENSMUST00000116542.9	2100	2	24	10	24	-6	multi-exon	FALSE	canonical	3	443	junction_1	0	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAGTGACCAGAATGTG	2179	False	NA	NA	False	AATAAA	-4	NA	10181283	10176511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10178462_10181167
ENSMUSG00000024743.17_0	chr19	+	4810	9	FSM	ENSMUSG00000024743.17	ENSMUST00000073899.6	1605	9	-40	-3165	-40	-1571	multi-exon	FALSE	canonical	3	41	junction_5	10.6418983268964	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTAGGGCCTTGGCTG	NA	False	NA	9	True	AATAAA	-9	NA	10366413	10428973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10366878_10390703_10390808_10395326_10395407_10412913_10413050_10416515_10416787_10420191_10420362_10420740_10420856_10421348_10421549_10425703
ENSMUSG00000024743.17_1	chr19	+	4959	10	FSM	ENSMUSG00000024743.17	ENSMUST00000223586.2	1344	10	-450	-3165	-57	-1571	multi-exon	FALSE	canonical	2	4	junction_3	24.2827988705514	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTAGGGCCTTGGCTG	NA	False	NA	9	True	AATAAA	-9	NA	10366396	10428973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10366878_10390703_10390808_10395326_10395407_10399120_10399253_10412913_10413050_10416515_10416787_10420191_10420362_10420740_10420856_10421348_10421549_10425703
ENSMUSG00000024743.17_12	chr19	+	2445	1	ISM	ENSMUSG00000024743.17	ENSMUST00000076968.11	6624	12	59734	1571	45147	-1571	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTAGGGCCTTGGCTG	378	False	NA	9	True	AATAAA	-9	NA	10426528	10428973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_10426500_10429000
ENSMUSG00000024750.12_13	chr19	+	1187	1	ISM	ENSMUSG00000024750.12	ENSMUST00000237651.2	7385	6	8560	4816	4798	-266	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTTCTTGTTTATTGG	NA	False	NA	15	True	AATAAA	-15	NA	21258201	21259388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_21258200_21259400
ENSMUSG00000024750.12_2	chr19	+	2555	6	FSM	ENSMUSG00000024750.12	ENSMUST00000237651.2	7385	6	12	4818	12	-268	multi-exon	FALSE	canonical	3	349	junction_1	12.0166551086398	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAGACTTCTTGTTTATT	NA	False	NA	13	True	AATAAA	-13	NA	21249653	21259386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_21250107_21253789_21253950_21254341_21254454_21255018_21255123_21256988_21257115_21257786
ENSMUSG00000024750.12_5	chr19	+	2947	5	NIC	ENSMUSG00000024750.12	novel	7385	6	NA	NA	12	-268	intron_retention	FALSE	canonical	3	349	junction_1	13.0096118312577	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAGACTTCTTGTTTATT	NA	False	NA	13	True	AATAAA	-13	NA	21249653	21259386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_21250107_21253789_21254454_21255018_21255123_21256988_21257115_21257786
ENSMUSG00000024754.14_1	chr19	+	6572	24	FSM	ENSMUSG00000024754.14	ENSMUST00000025663.8	6602	24	-9	39	5	-6	multi-exon	FALSE	canonical	3	56	junction_1	16.2129029807244	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTATGTATGTGTATTTG	NA	False	NA	14	True	AATAAA	-20	NA	21755712	21835685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_21756151_21770001_21770345_21774690_21774832_21775230_21775793_21779225_21779396_21784722_21784912_21786632_21786803_21789130_21789341_21789574_21789781_21789914_21789985_21792794_21792924_21795286_21795376_21801151_21801284_21802453_21802490_21803403_21803560_21807163_21807342_21809390_21809607_21812781_21812991_21819404_21819588_21821983_21822204_21825300_21825400_21829588_21829744_21833022_21833127_21833518
ENSMUSG00000024754.14_14	chr19	+	6063	23	ISM	ENSMUSG00000024754.14	ENSMUST00000096194.9	6667	25	14363	10	14317	-10	3prime_fragment	FALSE	canonical	3	59	junction_3	15.2811124167783	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTTTATGTATGTGTA	NA	False	NA	10	True	AATAAA	-16	NA	21770068	21835681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_21770345_21774690_21774832_21775230_21775793_21779225_21779396_21784722_21784912_21786632_21786803_21789130_21789341_21789574_21789781_21789914_21789985_21792794_21792924_21795286_21795376_21801151_21801284_21802453_21802490_21803403_21803560_21807163_21807342_21809390_21809607_21812781_21812991_21819404_21819588_21821983_21822204_21825300_21825400_21829588_21829744_21833022_21833127_21833518
ENSMUSG00000024754.14_18	chr19	+	5442	21	ISM	ENSMUSG00000024754.14	ENSMUST00000096194.9	6667	25	19732	7	19686	-7	3prime_fragment	FALSE	canonical	3	59	junction_1	15.8316139417306	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATGTATGTGTATTT	NA	False	NA	13	True	AATAAA	-19	NA	21775437	21835684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_21775793_21779225_21779396_21784722_21784912_21786632_21786803_21789130_21789341_21789574_21789781_21789914_21789985_21792794_21792924_21795286_21795376_21801151_21801284_21802453_21802490_21803403_21803560_21807163_21807342_21809390_21809607_21812781_21812991_21819404_21819588_21821983_21822204_21825300_21825400_21829588_21829744_21833022_21833127_21833518
ENSMUSG00000024754.14_2	chr19	+	6649	25	FSM	ENSMUSG00000024754.14	ENSMUST00000096194.9	6667	25	12	6	-4	-6	multi-exon	FALSE	canonical	3	20	junction_2	23.4529301059709	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTATGTATGTGTATTTG	NA	False	NA	14	True	AATAAA	-20	NA	21755717	21835685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_21756151_21757534_21757617_21770001_21770345_21774690_21774832_21775230_21775793_21779225_21779396_21784722_21784912_21786632_21786803_21789130_21789341_21789574_21789781_21789914_21789985_21792794_21792924_21795286_21795376_21801151_21801284_21802453_21802490_21803403_21803560_21807163_21807342_21809390_21809607_21812781_21812991_21819404_21819588_21821983_21822204_21825300_21825400_21829588_21829744_21833022_21833127_21833518
ENSMUSG00000024754.14_30	chr19	+	2831	6	ISM	ENSMUSG00000024754.14	ENSMUST00000096194.9	6667	25	63801	1	63755	-1	3prime_fragment	FALSE	canonical	3	96	junction_5	7.83326241102646	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATGTGTATTTGTGAAT	NA	False	NA	19	True	AATAAA	-25	NA	21819506	21835690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_21819588_21821983_21822204_21825300_21825400_21829588_21829744_21833022_21833127_21833518
ENSMUSG00000024754.14_34	chr19	+	1798	1	ISM	ENSMUSG00000024754.14	ENSMUST00000096194.9	6667	25	78187	1	78141	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATGTGTATTTGTGAAT	NA	False	NA	19	True	AATAAA	-25	NA	21833892	21835690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_21833900_21835700
ENSMUSG00000024758.16_1	chr19	-	2803	7	FSM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	-47	6	18	-6	multi-exon	FALSE	canonical	3	635	junction_1	35.2735343029618	896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTCTCATCAGTCTGCAA	8992	False	NA	-24	True	AATAAA	-11	NA	7460614	7403271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
ENSMUSG00000024758.16_5	chr19	-	1366	1	ISM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	55936	0	55936	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	NA	False	NA	-18	True	AATAAA	-17	NA	7404631	7403265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_7403300_7404600
ENSMUSG00000024759.15_0	chr19	+	1902	13	FSM	ENSMUSG00000024759.15	ENSMUST00000170373.9	7540	13	164	5474	9	0	multi-exon	TRUE	canonical	2	6	junction_1	12.0355376559033	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGCTTGGAAGCAGTTC	NA	False	NA	NA	False	AATAAA	-32	NA	7471568	7511565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_7471727_7486712_7486928_7487347_7487492_7494242_7494348_7495910_7495962_7498151_7498209_7498474_7498568_7499433_7499573_7506306_7506435_7506972_7507030_7507884_7507957_7509380_7509813_7511314
ENSMUSG00000024759.15_1	chr19	+	1973	13	FSM	ENSMUSG00000024759.15	ENSMUST00000025668.9	4368	13	-5	2400	-5	0	multi-exon	FALSE	canonical	3	31	junction_6	6.18409698788397	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGCTTGGAAGCAGTTC	NA	False	NA	NA	False	AATAAA	-32	NA	7471797	7511565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_7472027_7486712_7486928_7487347_7487492_7494242_7494348_7495910_7495962_7498151_7498209_7498474_7498568_7499433_7499573_7506306_7506435_7506972_7507030_7507884_7507957_7509380_7509813_7511314
ENSMUSG00000024759.15_10	chr19	+	1840	1	ISM	ENSMUSG00000024759.15	ENSMUST00000170373.9	7540	13	42729	1066	42234	-1066	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTGTGTTGTTACTG	NA	False	NA	6	True	ATTAAA	-18	NA	7514133	7515973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_7514100_7516000
ENSMUSG00000024764.11_0	chr19	-	3108	8	FSM	ENSMUSG00000024764.11	ENSMUST00000025675.11	3231	8	122	1	-5	-1	multi-exon	FALSE	canonical	3	441	junction_1	30.7431757816732	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTGGGATGGCATCCA	NA	False	NA	-21	True	AATAAA	-15	NA	7218426	7203038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212427_7212524_7218302
ENSMUSG00000024764.11_2	chr19	-	3322	6	FSM	ENSMUSG00000024764.11	ENSMUST00000237834.2	1569	6	2	-1755	2	-1	multi-exon	TRUE	canonical	3	441	junction_1	33.2060235499525	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTGGGATGGCATCCA	NA	False	NA	-21	True	AATAAA	-15	NA	7218417	7203038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_7205457_7205716_7205795_7207086_7207649_7211468_7211522_7212427_7212524_7218302
ENSMUSG00000024764.11_30	chr19	-	5625	1	FSM	ENSMUSG00000024764.11	ENSMUST00000235323.2	4520	1	18	-1123	-2	1123	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	7218401	7212776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_7212800_7218400
ENSMUSG00000024764.11_4	chr19	-	1847	1	ISM	ENSMUSG00000024764.11	ENSMUST00000236628.2	3993	7	13514	6	13514	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTGGGATGGCATCCA	1396	False	NA	-21	True	AATAAA	-15	NA	7204885	7203038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_7203000_7204900
ENSMUSG00000024766.16_3	chr19	-	2741	11	FSM	ENSMUSG00000024766.16	ENSMUST00000112508.9	2839	11	93	5	93	-2	multi-exon	FALSE	canonical	3	39	junction_5	12.3109707172099	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGTTTTCTGTTTCTTA	NA	False	NA	-6	True	NA	NA	NA	33567615	33532564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_33533880_33534506_33534579_33535664_33535737_33536911_33537056_33556761_33556899_33557864_33557975_33559452_33559652_33560446_33560565_33562269_33562376_33565600_33565744_33567290
ENSMUSG00000024766.16_7	chr19	-	2603	10	NIC	ENSMUSG00000024766.16	novel	2839	11	NA	NA	93	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	21.3148067702788	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCAGTTTTCTGTTTCTT	NA	False	NA	-7	True	NA	NA	NA	33567615	33532565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_33533880_33534506_33534579_33535664_33535737_33536911_33537056_33557864_33557975_33559452_33559652_33560446_33560565_33562269_33562376_33565600_33565744_33567290
ENSMUSG00000024767.12_2	chr19	-	1024	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	44	645	-38	-637	multi-exon	TRUE	canonical	3	1089	junction_1	76.373351955305	705	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGAGTGTGCGCTTCCC	NA	False	NA	-8	True	ATTAAA	-17	NA	7183637	7176211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
ENSMUSG00000024769.8_1	chr19	+	6188	37	FSM	ENSMUSG00000024769.8	ENSMUST00000025681.8	5995	37	-201	8	-201	-8	multi-exon	TRUE	canonical	1	1	junction_14	6.99001713203715	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAAGCTGCTGGCTTCCCTG	9866	False	NA	0	True	AATAAA	-10	NA	6356284	6375674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6356906_6359155_6359248_6359328_6359413_6359756_6359853_6360247_6360397_6360824_6360919_6361051_6361253_6361351_6361601_6362147_6362228_6363248_6363347_6363444_6363526_6363718_6363826_6363920_6364101_6364314_6364396_6364525_6364648_6364734_6364811_6365019_6365127_6365201_6365317_6365668_6365818_6365893_6365983_6366228_6366282_6366370_6366470_6366548_6366609_6366858_6366965_6367190_6367325_6367404_6367545_6367633_6367716_6368387_6368605_6370108_6370172_6370272_6370873_6371686_6371785_6371856_6371942_6372056_6372178_6372283_6372402_6372584_6372709_6372822_6372912_6374546
ENSMUSG00000024769.8_10	chr19	+	3025	14	ISM	ENSMUSG00000024769.8	ENSMUST00000025681.8	5995	37	10447	14	-4905	-14	3prime_fragment	FALSE	canonical	3	10	junction_6	6.47343227691361	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTATAAGCTGCTGGCT	2309	False	NA	-6	True	AATAAA	-4	NA	6366932	6375668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6366965_6367190_6367325_6367404_6367545_6367633_6367716_6368387_6368605_6370108_6370172_6370272_6370873_6371686_6371785_6371856_6371942_6372056_6372178_6372283_6372402_6372584_6372709_6372822_6372912_6374546
ENSMUSG00000024769.8_18	chr19	+	459	1	Genic_Genomic	ENSMUSG00000024769.8	novel	NA	NA	NA	NA	3389	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTGCCTAGGTCTGT	445	False	NA	11	True	AATAAA	-21	NA	6375226	6375685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_6375200_6375700
ENSMUSG00000024769.8_26	chr19	+	2859	8	NIC	ENSMUSG00000024769.8	novel	5995	37	NA	NA	-2053	0	intron_retention	FALSE	canonical	3	12	junction_3	7.35679610833356	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTTCCCTGCCTAGGTC	5161	False	NA	8	True	AATAAA	-18	NA	6369784	6375682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6370873_6371686_6371785_6371856_6371942_6372056_6372178_6372283_6372402_6372584_6372709_6372822_6372912_6374546
ENSMUSG00000024772.10_0	chr19	+	3176	5	FSM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	162	15	-38	-15	multi-exon	FALSE	canonical	3	357	junction_1	38.2687862363049	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTGCCAAAGCCTCTCA	NA	False	NA	1	True	ATTAAA	-9	NA	6326916	6350111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103
ENSMUSG00000024772.10_7	chr19	+	2391	3	ISM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	17690	9	234	-9	3prime_fragment	FALSE	canonical	3	389	junction_1	32.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAAGCCTCTCATGCTCC	657	False	NA	7	True	ATTAAA	-15	NA	6344444	6350117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6344657_6347562_6347728_6348103
ENSMUSG00000024772.10_9	chr19	+	1761	1	ISM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	21598	13	409	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGCCAAAGCCTCTCATG	1934	False	NA	3	True	ATTAAA	-11	NA	6348352	6350113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6348400_6350100
ENSMUSG00000024773.16_0	chr19	+	6282	40	FSM	ENSMUSG00000024773.16	ENSMUST00000045351.13	6371	40	48	41	48	-1	multi-exon	FALSE	canonical	3	75	junction_9	16.8787297726361	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCAGGCCACGTCCAGGT	8992	False	NA	14	True	AATAAA	-14	NA	6291745	6312324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6291997_6294456_6294620_6294716_6294870_6295075_6295179_6295488_6295724_6296333_6296431_6296517_6296680_6296781_6296923_6297668_6297907_6297992_6298141_6298226_6298320_6299801_6299958_6300053_6300298_6300442_6300540_6300625_6300786_6301288_6301432_6301517_6301634_6301735_6301894_6302456_6302608_6302719_6302914_6303017_6303099_6303363_6303471_6303553_6303647_6304388_6304460_6304619_6304697_6305130_6305296_6305438_6305569_6305648_6305858_6306197_6306407_6306581_6306718_6307468_6307673_6307806_6307909_6307992_6308075_6308163_6308297_6308390_6308464_6308580_6308664_6308893_6309016_6310018_6310174_6311401_6311555_6311630
ENSMUSG00000024773.16_39	chr19	+	176	1	ISM	ENSMUSG00000024773.16	ENSMUST00000135018.2	706	2	632	0	632	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAACAGAAGCACGTG	2373	False	NA	NA	False	NA	NA	NA	6302149	6302325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6302100_6302300
ENSMUSG00000024773.16_7	chr19	+	6300	40	NIC	ENSMUSG00000024773.16	novel	6371	40	NA	NA	36	-1	combination_of_known_junctions	TRUE	canonical	3	12	junction_26	22.3891821346849	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCAGGCCACGTCCAGGT	8980	False	NA	14	True	AATAAA	-14	NA	6291733	6312324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6291997_6294456_6294620_6294716_6294870_6295075_6295179_6295488_6295724_6296333_6296431_6296517_6296680_6296781_6296923_6297668_6297907_6297992_6298141_6298226_6298320_6299801_6299958_6300053_6300298_6300442_6300540_6300625_6300786_6301288_6301432_6301517_6301634_6301735_6301894_6302456_6302608_6302719_6302914_6303017_6303099_6303363_6303471_6303553_6303647_6304388_6304460_6304619_6304697_6305130_6305302_6305438_6305569_6305648_6305858_6306197_6306407_6306581_6306718_6307468_6307673_6307806_6307909_6307992_6308075_6308163_6308297_6308390_6308464_6308580_6308664_6308893_6309016_6310018_6310174_6311401_6311555_6311630
ENSMUSG00000024776.19_1	chr19	+	1975	11	FSM	ENSMUSG00000024776.19	ENSMUST00000054956.15	2024	11	38	11	38	-9	multi-exon	FALSE	canonical	3	23	junction_1	15.5630973780928	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAACAAGCTGTCCGGTT	NA	False	NA	NA	False	AATAAA	-10	NA	34169666	34217722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_34170032_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
ENSMUSG00000024776.19_2	chr19	+	1942	11	FSM	ENSMUSG00000024776.19	ENSMUST00000239240.2	1988	11	35	11	35	-9	multi-exon	FALSE	canonical	3	29	junction_1	14.1918990977247	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAACAAGCTGTCCGGTT	NA	False	NA	NA	False	AATAAA	-10	NA	34169663	34217722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_34169996_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
ENSMUSG00000024777.11_0	chr19	-	2708	14	FSM	ENSMUSG00000024777.11	ENSMUST00000025695.10	2742	14	30	4	1	-4	multi-exon	TRUE	canonical	3	82	junction_11	13.4199357135648	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGCATTGCTTGCTTTAT	NA	False	NA	-4	True	AATAAA	-10	NA	6285872	6277798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6278562_6278971_6279074_6279251_6279380_6280185_6280306_6280415_6280467_6280531_6280586_6280936_6281046_6281145_6281206_6282299_6282431_6282557_6282651_6282796_6282899_6283806_6284004_6284662_6285130_6285541
ENSMUSG00000024777.11_10	chr19	-	2338	14	NIC	ENSMUSG00000024777.11	novel	2742	14	NA	NA	4	-2	combination_of_known_junctions	FALSE	canonical	2	2	junction_13	30.6883552496545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATTGCTTGCTTTATTG	NA	False	NA	-2	True	AATAAA	-12	NA	6285869	6277796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6278562_6278971_6279074_6279251_6279380_6280185_6280306_6280415_6280467_6280531_6280586_6280936_6281046_6281145_6281206_6282299_6282431_6282557_6282651_6282796_6282899_6283806_6284004_6284662_6284761_6285541
ENSMUSG00000024778.14_0	chr19	+	1442	9	FSM	ENSMUSG00000024778.14	ENSMUST00000025691.13	1481	9	31	8	15	-2	multi-exon	FALSE	canonical	1	1	junction_8	3.55096817783545	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTATTGCTCTGTTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	34268096	34305164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_34268145_34284524_34284679_34292578_34292717_34293968_34294078_34295989_34296052_34296182_34296237_34296709_34296790_34297960_34297986_34304392
ENSMUSG00000024780.8_1	chr19	+	2542	7	FSM	ENSMUSG00000024780.8	ENSMUST00000050148.5	5179	7	-35	2672	-20	973	multi-exon	FALSE	canonical	3	145	junction_6	22.9449825064702	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTATATGGCAGTGCTCA	3934	False	NA	17	True	AATAAA	-11	NA	28967864	28994965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993405
ENSMUSG00000024780.8_11	chr19	+	5500	6	FSM	ENSMUSG00000024780.8	ENSMUST00000225210.2	4163	6	118	-1455	0	-1	multi-exon	FALSE	canonical	3	165	junction_5	18.3019124683734	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGTGACCTACTTTACTA	3954	False	NA	NA	False	AATAAA	-6	NA	28967884	28993991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288
ENSMUSG00000024780.8_18	chr19	+	3844	1	ISM	ENSMUSG00000024780.8	ENSMUST00000050148.5	5179	7	25865	29	4456	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAGTAAAATAAAAT	3278	False	NA	-18	True	TTTAAA	-26	NA	28993764	28997608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_28993800_28997600
ENSMUSG00000024780.8_4	chr19	+	3665	7	FSM	ENSMUSG00000024780.8	ENSMUST00000225310.2	4079	7	117	297	-16	-297	multi-exon	FALSE	canonical	3	25	junction_6	62.7147421974203	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATGTAGTTTTTAAGT	3938	False	NA	NA	False	AATACA	-24	NA	28967868	28992874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28990187
ENSMUSG00000024781.17_0	chr19	-	2951	10	FSM	ENSMUSG00000024781.17	ENSMUST00000178114.2	2965	10	14	0	-8	0	multi-exon	FALSE	canonical	0	0	junction_9	13.9283882771841	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCGGTGTGGTGTTTGC	5929	False	NA	-2	True	AATAAA	-20	NA	34504860	34469717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_34471614_34472459_34472532_34477496_34477569_34478902_34479050_34484408_34484546_34486388_34486499_34488222_34488422_34500821_34500940_34502137_34502243_34504765
ENSMUSG00000024781.17_1	chr19	-	2956	10	FSM	ENSMUSG00000024781.17	ENSMUST00000049572.15	2969	10	13	0	-9	0	multi-exon	FALSE	canonical	3	30	junction_9	6.37704215656966	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCGGTGTGGTGTTTGC	5928	False	NA	-2	True	AATAAA	-20	NA	34504861	34469717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_34471614_34472459_34472532_34477496_34477569_34478902_34479050_34484408_34484546_34486388_34486499_34488222_34488422_34500821_34500940_34502137_34502247_34504765
ENSMUSG00000024781.17_2	chr19	-	2435	6	ISM	ENSMUSG00000024781.17	ENSMUST00000178114.2	2965	10	18374	1	1880	-1	3prime_fragment	FALSE	canonical	3	36	junction_5	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACATCGGTGTGGTGTTTG	8623	False	NA	-3	True	AATAAA	-19	NA	34486500	34469718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_34471614_34472459_34472532_34477496_34477569_34478902_34479050_34484408_34484546_34486388
ENSMUSG00000024781.17_6	chr19	-	1107	1	ISM	ENSMUSG00000024781.17	ENSMUST00000178114.2	2965	10	34050	0	8429	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCGGTGTGGTGTTTGC	4323	False	NA	-2	True	AATAAA	-20	NA	34470824	34469717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_34469700_34470800
ENSMUSG00000024782.8_0	chr19	-	2770	5	FSM	ENSMUSG00000024782.8	ENSMUST00000025696.5	2809	5	32	7	32	-7	multi-exon	FALSE	canonical	3	26	junction_1	7.58287544405155	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTACCCGGGCTGTCT	NA	False	NA	-8	True	AATAAA	-9	NA	29025329	28998239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_29000347_29003611_29003731_29004570_29004744_29015271_29015392_29025078
ENSMUSG00000024782.8_1	chr19	-	3762	1	NIC	ENSMUSG00000024782.8	novel	2809	5	NA	NA	2643	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTACCCGGGCTGTCT	1862	False	NA	-8	True	AATAAA	-9	NA	29002001	28998239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_28998200_29002000
ENSMUSG00000024782.8_2	chr19	-	6027	4	NIC	ENSMUSG00000024782.8	novel	2809	5	NA	NA	40	-7	intron_retention	FALSE	canonical	3	29	junction_3	6.37704215656966	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTACCCGGGCTGTCT	NA	False	NA	-8	True	AATAAA	-9	NA	29025321	28998239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_29003731_29004570_29004744_29015271_29015392_29025078
ENSMUSG00000024785.8_2	chr19	+	1759	9	FSM	ENSMUSG00000024785.8	ENSMUST00000064393.6	1803	9	45	-1	45	1	multi-exon	TRUE	canonical	3	369	junction_1	16.9958634673264	431	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGCACTGTAGTGTAAAT	NA	False	NA	28	True	CATAAA	-20	NA	29078819	29121244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541
ENSMUSG00000024786.10_0	chr19	+	1566	10	NIC	ENSMUSG00000024786.10	novel	1562	11	NA	NA	-39	3	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.54062594260057	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGCCCTGAGGTTTAAGC	7999	False	NA	13	True	AATAAA	-29	NA	6234378	6274258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6234613_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
ENSMUSG00000024786.10_1	chr19	+	1674	11	FSM	ENSMUSG00000024786.10	ENSMUST00000113528.2	1562	11	-120	8	-41	-2	multi-exon	FALSE	canonical	3	12	junction_2	3.41906419945575	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGAATTCTACTGCCCT	7997	False	NA	2	True	AATAAA	-18	NA	6234376	6274247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6234613_6245693_6245811_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
ENSMUSG00000024787.15_0	chr19	-	1565	8	FSM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	63	7	-52	-7	multi-exon	FALSE	canonical	3	79	junction_5	6.49018096662888	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAACCAGGTCCATTTG	NA	False	NA	-6	True	NA	NA	NA	6178271	6169435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812_6171961_6172069_6172186_6173859_6173981_6174182_6174219_6178078
ENSMUSG00000024787.15_11	chr19	-	1663	9	NIC	ENSMUSG00000024787.15	novel	1635	8	NA	NA	-41	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	39.0846437235905	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAACCAGGTCCATTTG	NA	False	NA	-6	True	NA	NA	NA	6178260	6169435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6169985_6170515_6170774_6171130_6171240_6171408_6171553_6171812_6171961_6172069_6172186_6173859_6173981_6174182_6174219_6178078
ENSMUSG00000024787.15_2	chr19	-	1505	7	NIC	ENSMUSG00000024787.15	novel	1635	8	NA	NA	-28	-7	combination_of_known_junctions	FALSE	canonical	2	7	junction_6	30.1740322499699	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAACCAGGTCCATTTG	NA	False	NA	-6	True	NA	NA	NA	6178247	6169435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812_6171961_6172069_6172186_6173859_6173981_6178078
ENSMUSG00000024787.15_6	chr19	-	3245	7	NIC	ENSMUSG00000024787.15	novel	1635	8	NA	NA	57	-7	intron_retention	FALSE	canonical	3	86	junction_3	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAACCAGGTCCATTTG	NA	False	NA	-6	True	NA	NA	NA	6178277	6169435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812_6171961_6172069_6173981_6174182_6174219_6178078
ENSMUSG00000024787.15_9	chr19	-	1101	4	ISM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	6372	7	-290	-7	3prime_fragment	FALSE	canonical	3	86	junction_3	2.49443825784929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAACCAGGTCCATTTG	NA	False	NA	-6	True	NA	NA	NA	6171962	6169435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812
ENSMUSG00000024789.14_0	chr19	+	5061	25	FSM	ENSMUSG00000024789.14	ENSMUST00000065796.10	5030	25	-58	27	-58	-27	multi-exon	FALSE	canonical	3	14	junction_12	5.21749194749951	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTATACAAGATTTTAAA	NA	False	NA	NA	False	AATAAA	-18	NA	29229169	29290453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_29229519_29229836_29229920_29239582_29239834_29248750_29248875_29252401_29252520_29254149_29254296_29259716_29260039_29260941_29261062_29262236_29262395_29263700_29263813_29265300_29265488_29266073_29266202_29268566_29268702_29272255_29272344_29273041_29273170_29273909_29274049_29275692_29275845_29275987_29276139_29276878_29277016_29278308_29278499_29279011_29279137_29279298_29279472_29286994_29287113_29288327_29288442_29289140
ENSMUSG00000024789.14_11	chr19	+	1718	4	ISM	ENSMUSG00000024789.14	ENSMUST00000025705.7	4947	24	50072	26	49459	-26	3prime_fragment	FALSE	canonical	3	25	junction_3	5.09901951359278	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTATACAAGATTTTAAAT	4229	False	NA	NA	False	AATAAA	-19	NA	29279299	29290454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_29279472_29286994_29287113_29288327_29288442_29289140
ENSMUSG00000024789.14_20	chr19	+	1315	1	NIC	ENSMUSG00000024789.14	novel	4947	24	NA	NA	59299	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTATACAAGATTTTAAAT	1097	False	NA	NA	False	AATAAA	-19	NA	29289139	29290454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_29289100_29290500
ENSMUSG00000024789.14_4	chr19	+	4248	24	NIC	ENSMUSG00000024789.14	novel	5030	25	NA	NA	-89	-11	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	6.89456101899261	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATTAAATACCTTTTC	NA	False	NA	NA	False	ATTAAA	-7	NA	29229138	29289729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_29229519_29229836_29229920_29239582_29239834_29248750_29248875_29252401_29252520_29254149_29254296_29259716_29260039_29262236_29262395_29263700_29263813_29265300_29265488_29266073_29266202_29268566_29268702_29272255_29272344_29273041_29273170_29273909_29274049_29275692_29275845_29275987_29276139_29276878_29277016_29278308_29278499_29279011_29279137_29279298_29279472_29286994_29287113_29288327_29288442_29289140
ENSMUSG00000024790.9_0	chr19	-	1319	2	FSM	ENSMUSG00000024790.9	ENSMUST00000113533.3	1442	2	119	4	119	-4	multi-exon	FALSE	canonical	3	283	junction_1	0	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAACAGGAACTTTT	NA	False	NA	-13	True	AATAAA	-21	NA	6168561	6166033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6166618_6167826
ENSMUSG00000024791.11_0	chr19	+	1932	6	FSM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	86	6	86	-6	multi-exon	FALSE	canonical	3	368	junction_5	42.0218990527558	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACGTTTGCAGACTGCTT	NA	False	NA	29	True	AATAAA	-14	NA	6135098	6141801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080_6140555_6140677
ENSMUSG00000024791.11_17	chr19	+	855	1	ISM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	5934	6	5090	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACGTTTGCAGACTGCTT	NA	False	NA	29	True	AATAAA	-14	NA	6140946	6141801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6140900_6141800
ENSMUSG00000024792.10_3	chr19	-	1265	8	FSM	ENSMUSG00000024792.10	ENSMUST00000025707.9	1287	8	19	3	3	0	multi-exon	FALSE	canonical	3	219	junction_7	142.172789382555	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTTCTGAAGCAGCTTT	6459	False	NA	NA	False	AATAAA	-15	NA	6134954	6130794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134893
ENSMUSG00000024792.10_4	chr19	-	1328	8	FSM	ENSMUSG00000024792.10	ENSMUST00000160977.8	922	8	-3	-403	-3	0	multi-exon	FALSE	canonical	3	381	junction_7	88.3658905474556	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTTCTGAAGCAGCTTT	6465	False	NA	NA	False	AATAAA	-15	NA	6134948	6130794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134824
ENSMUSG00000024792.10_6	chr19	-	1270	8	NIC	ENSMUSG00000024792.10	novel	1287	8	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_7	201.730978669866	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTTCTGAAGCAGCTTT	6672	False	NA	NA	False	AATAAA	-15	NA	6134741	6130794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134675
ENSMUSG00000024793.15_1	chr4	+	1657	7	FSM	ENSMUSG00000024793.15	ENSMUST00000035275.8	1603	7	-64	10	-64	-10	multi-exon	FALSE	canonical	1	1	junction_3	3.13138237134266	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAAGCAGCTGCTTGGT	718	False	NA	NA	False	ATTAAA	-7	NA	152200735	152204558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152201181_152201387_152201523_152201834_152202000_152202857_152202957_152203146_152203185_152203616_152203801_152203967
ENSMUSG00000024793.15_3	chr4	+	2690	6	NIC	ENSMUSG00000024793.15	novel	1661	10	NA	NA	27	-12	intron_retention	FALSE	canonical	0	0	junction_2	3.84707681233427	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAAAAGCAGCTGCTTG	865	False	NA	NA	False	ATTAAA	-5	NA	152200882	152204556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_152202000_152202096_152202760_152202857_152202957_152203146_152203185_152203616_152203801_152203967
ENSMUSG00000024795.12_0	chr19	+	5543	32	NNC	ENSMUSG00000024795.12	novel	5564	32	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.5072624775909	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCGGTGTACTTTATAAG	NA	False	NA	2	True	AATAAA	-13	NA	34899784	34953134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_34899834_34902020_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918612_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
ENSMUSG00000024795.12_11	chr19	+	5318	31	NNC	ENSMUSG00000024795.12	novel	5423	32	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	78.6026646424209	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACCGGTGTACTTTAT	NA	False	NA	-1	True	AATAAA	-10	NA	34899784	34953131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_34899834_34902020_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34950258_34950410_34951827_34951971_34952892
ENSMUSG00000024795.12_112	chr19	+	2560	14	ISM	ENSMUSG00000024795.12	ENSMUST00000224728.2	4352	24	14581	11	-2625	-2	3prime_fragment	FALSE	canonical	3	212	junction_11	51.2752174933864	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACCGGTGTACTTTATA	5253	False	NA	0	True	AATAAA	-11	NA	34927666	34953132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
ENSMUSG00000024795.12_114	chr19	+	2406	13	NIC	ENSMUSG00000024795.12	novel	4352	24	NA	NA	-2574	-3	combination_of_known_junctions	FALSE	canonical	3	140	junction_10	62.9035306375299	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACCGGTGTACTTTAT	5304	False	NA	-1	True	AATAAA	-10	NA	34927717	34953131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34950258_34950410_34951827_34951971_34952892
ENSMUSG00000024795.12_2	chr19	+	5537	32	FSM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	26	1	-5	0	multi-exon	FALSE	canonical	3	97	junction_15	68.2854387453211	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCGGTGTACTTTATAAG	NA	False	NA	2	True	AATAAA	-13	NA	34899786	34953134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918612_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
ENSMUSG00000024795.12_3	chr19	+	5435	32	FSM	ENSMUSG00000024795.12	ENSMUST00000223907.2	5423	32	-23	11	8	0	multi-exon	FALSE	canonical	3	103	junction_1	62.1311593110583	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCGGTGTACTTTATAAG	NA	False	NA	2	True	AATAAA	-13	NA	34899768	34953134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
ENSMUSG00000024795.12_4	chr19	+	5422	32	NNC	ENSMUSG00000024795.12	novel	5423	32	NA	NA	-8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.3937691101489	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACCGGTGTACTTTATA	NA	False	NA	0	True	AATAAA	-11	NA	34899783	34953132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_34899834_34902020_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
ENSMUSG00000024795.12_7	chr19	+	5445	31	NIC	ENSMUSG00000024795.12	novel	5564	32	NA	NA	13	-3	combination_of_known_junctions	FALSE	canonical	3	97	junction_15	72.6510763092254	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACCGGTGTACTTTAT	NA	False	NA	-1	True	AATAAA	-10	NA	34899773	34953131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918612_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34950258_34950410_34951827_34951971_34952892
ENSMUSG00000024795.12_8	chr19	+	5318	31	NIC	ENSMUSG00000024795.12	novel	5423	32	NA	NA	-11	-3	combination_of_known_junctions	FALSE	canonical	3	103	junction_1	66.7043226985078	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACCGGTGTACTTTAT	NA	False	NA	-1	True	AATAAA	-10	NA	34899780	34953131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34950258_34950410_34951827_34951971_34952892
ENSMUSG00000024797.15_16	chr19	-	2556	10	NIC	ENSMUSG00000024797.15	novel	2675	10	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	45.903548909307	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTTGCCTGCAGGGG	1023	False	NA	-4	True	AATAAA	-17	NA	6127225	6118020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6118472_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
ENSMUSG00000024797.15_23	chr19	-	2854	9	NIC	ENSMUSG00000024797.15	novel	2675	10	NA	NA	4	-1	intron_retention	FALSE	canonical	3	124	junction_6	17.2753437013566	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTTGCCTGCAGGGG	1024	False	NA	-4	True	AATAAA	-17	NA	6127224	6118020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
ENSMUSG00000024797.15_24	chr19	-	852	2	FSM	ENSMUSG00000024797.15	ENSMUST00000160590.2	840	2	-13	1	-10	-1	multi-exon	FALSE	canonical	3	178	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGTGGTAACTTTTGTTT	1005	False	NA	0	True	ATTAAA	-19	NA	6127243	6125933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6126523_6126980
ENSMUSG00000024797.15_34	chr19	-	1621	6	ISM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	6202	149	-1331	-1	3prime_fragment	FALSE	canonical	3	134	junction_3	10.303397497913	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTTGCCTGCAGGGG	7189	False	NA	-4	True	AATAAA	-17	NA	6121059	6118020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468
ENSMUSG00000024797.15_5	chr19	-	2489	10	FSM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	37	149	4	-1	multi-exon	FALSE	canonical	3	124	junction_7	16.3026923475166	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTTGCCTGCAGGGG	1024	False	NA	-4	True	AATAAA	-17	NA	6127224	6118020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
ENSMUSG00000024799.17_0	chr19	-	1454	10	FSM	ENSMUSG00000024799.17	ENSMUST00000025713.12	1471	10	16	1	1	0	multi-exon	FALSE	canonical	3	192	junction_3	30.8704981223334	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTTTTTCTTCTATC	-5	True	NA	-1	True	AATAAA	-14	NA	6117856	6112851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
ENSMUSG00000024799.17_13	chr19	-	1270	9	NIC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_8	79.8254932649965	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTTTTTCTTCTATC	9964	False	NA	-1	True	AATAAA	-14	NA	6117869	6112851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117698
ENSMUSG00000024799.17_14	chr19	-	1349	10	NIC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	76.3254888416287	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	9953	False	NA	0	True	AATAAA	-15	NA	6117880	6112850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116594_6116997_6117053_6117152_6117350_6117698
ENSMUSG00000024799.17_2	chr19	-	1742	9	NIC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	192	junction_3	32.6410401182315	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	9964	False	NA	0	True	AATAAA	-15	NA	6117869	6112850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6117053_6117152_6117350_6117698
ENSMUSG00000024799.17_3	chr19	-	1126	9	NIC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	101.258873067993	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTTTTTCTTCTATC	-4	True	NA	-1	True	AATAAA	-14	NA	6117855	6112851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116594_6116997_6117053_6117698
ENSMUSG00000024799.17_35	chr19	-	880	5	FSM	ENSMUSG00000024799.17	ENSMUST00000160354.8	1443	5	-45	608	6	-6	multi-exon	FALSE	canonical	3	213	junction_4	26.5988721565408	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAGAGAGAGAGAGAGCG	0	True	NA	-16	True	TATAAA	-7	NA	6117851	6116164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
ENSMUSG00000024800.9_1	chr19	+	997	11	FSM	ENSMUSG00000024800.9	ENSMUST00000025714.9	1145	11	-10	158	5	141	multi-exon	FALSE	canonical	3	930	junction_4	72.6416547168359	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACTAACAGCTTAATTA	NA	False	NA	24	True	AATAAA	-20	NA	36061120	36082019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024800.9_9	chr19	+	952	11	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	5	145	combination_of_known_junctions	FALSE	canonical	3	67	junction_7	297.230701644362	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAACAGCTTAATTAATTT	NA	False	NA	28	True	AATAAA	-24	NA	36061120	36082023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077640_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024805.17_0	chr19	+	1627	9	FSM	ENSMUSG00000024805.17	ENSMUST00000225920.2	6443	9	20	4796	20	-18	multi-exon	FALSE	canonical	3	10	junction_1	36.9382931386928	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAATAAACAACCAA	NA	False	NA	-24	True	NA	NA	NA	36325728	36433574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_36325970_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
ENSMUSG00000024805.17_1	chr19	+	1941	10	NIC	ENSMUSG00000024805.17	novel	6443	9	NA	NA	21	225	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	38.9580337679114	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAACATTTGTTACTGT	NA	False	NA	NA	False	AATAAA	-15	NA	36325729	36433829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_36325970_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36427963_36428024_36433020
ENSMUSG00000024805.17_10	chr19	+	779	1	ISM	ENSMUSG00000024805.17	ENSMUST00000225920.2	6443	9	107344	4539	15999	227	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAACATTTGTTACTGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	36433052	36433831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_36433100_36433800
ENSMUSG00000024805.17_11	chr19	+	2160	1	ISM	ENSMUSG00000024805.17	ENSMUST00000225920.2	6443	9	110495	7	19150	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTATTGTTGGCCTGTT	NA	False	NA	NA	False	ATTAAA	-12	NA	36436203	36438363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_36436200_36438400
ENSMUSG00000024805.17_2	chr19	+	1553	9	FSM	ENSMUSG00000024805.17	ENSMUST00000062389.6	1566	9	0	13	0	-13	multi-exon	FALSE	canonical	3	71	junction_8	19.6580136331217	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAATAAACAACCAAAAAAA	NA	False	NA	-19	True	NA	NA	NA	36387147	36433579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
ENSMUSG00000024805.17_3	chr19	+	1630	10	FSM	ENSMUSG00000024805.17	ENSMUST00000225411.2	1626	10	-21	17	-21	-17	multi-exon	FALSE	canonical	3	44	junction_8	28.4843470118477	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAATAAACAACCAAA	NA	False	NA	-23	True	NA	NA	NA	36387126	36433575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36427963_36428024_36433020
ENSMUSG00000024805.17_4	chr19	+	1573	9	NIC	ENSMUSG00000024805.17	novel	1566	9	NA	NA	-28	-18	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	39.0736484091261	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAATAAACAACCAA	NA	False	NA	-24	True	NA	NA	NA	36387119	36433574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414705_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
ENSMUSG00000024805.17_5	chr19	+	1617	10	NIC	ENSMUSG00000024805.17	novel	1626	10	NA	NA	-5	-11	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	41.0365690573664	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAACAACCAAAAAAAAA	NA	False	NA	-17	True	AAAAAG	-1	NA	36387142	36433581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414705_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36427963_36428024_36433020
ENSMUSG00000024806.5_0	chr19	+	453	3	ISM	ENSMUSG00000024806.5	ENSMUST00000235954.2	739	5	6719	-22	6719	22	3prime_fragment	FALSE	canonical	3	41	junction_1	3.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTCTGGGCAGTAATGC	NA	False	NA	26	True	AATAAA	-17	NA	29682052	29685848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_29682117_29684207_29684322_29685573
ENSMUSG00000024807.19_0	chr19	+	3247	16	NIC	ENSMUSG00000024807.19	novel	3464	16	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	31.1593752611741	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGATTGGTAGAACGTGTC	804	False	NA	8	True	AATAAA	-11	NA	6096670	6103737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6097012_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179_6099284_6099800_6099928_6100021_6100122_6100199_6100266_6100354_6100472_6100551_6100716_6100970_6101100_6101184_6101341_6101422_6101610_6102357_6102510_6102577
ENSMUSG00000024807.19_1	chr19	+	2979	16	FSM	ENSMUSG00000024807.19	ENSMUST00000138532.8	3464	16	480	5	-5	-2	multi-exon	FALSE	canonical	3	88	junction_11	13.9593059362642	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGATTGGTAGAACGTGTC	1219	False	NA	8	True	AATAAA	-11	NA	6097085	6103737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6097159_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179_6099284_6099800_6099928_6100021_6100122_6100199_6100266_6100354_6100472_6100551_6100716_6100970_6101100_6101184_6101341_6101422_6101610_6102357_6102510_6102577
ENSMUSG00000024807.19_6	chr19	+	3051	15	ISM	ENSMUSG00000024807.19	ENSMUST00000156550.8	3363	16	390	2	-9	-2	intron_retention	FALSE	canonical	3	88	junction_11	13.7605247289602	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGATTGGTAGAACGTGTC	1215	False	NA	8	True	AATAAA	-11	NA	6097081	6103737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6097159_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179_6099284_6099800_6099928_6100021_6100122_6100199_6100266_6100354_6100472_6100551_6100716_6100970_6101100_6101184_6101341_6101422_6101610_6102357
ENSMUSG00000024811.12_0	chr19	+	5863	27	FSM	ENSMUSG00000024811.12	ENSMUST00000025729.12	6481	27	21	597	21	-597	multi-exon	FALSE	canonical	3	663	junction_17	101.711420291683	1313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGGTAGCATGGTAATT	NA	False	NA	25	True	AATAAA	-14	NA	36811652	36870280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_36812137_36822933_36823159_36826688_36826785_36828899_36828937_36829877_36829954_36830201_36830297_36832290_36832358_36835202_36835390_36836454_36836577_36839485_36839578_36839686_36839766_36843351_36843524_36845039_36845120_36849012_36849159_36849822_36849989_36851196_36851417_36852663_36852774_36853584_36853774_36856634_36856888_36857909_36857993_36859076_36859198_36861465_36861564_36862882_36862958_36864465_36864572_36866108_36866296_36867291_36867449_36868140
ENSMUSG00000024811.12_1	chr19	+	5671	26	NIC	ENSMUSG00000024811.12	novel	6481	27	NA	NA	25	-596	combination_of_known_junctions	FALSE	canonical	3	243	junction_17	153.021912156397	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGGTAGCATGGTAATTC	NA	False	NA	26	True	AATAAA	-15	NA	36811656	36870281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_36812137_36822933_36823159_36826688_36826785_36828899_36828937_36829877_36829954_36830201_36830297_36832290_36832358_36835202_36835390_36836454_36836577_36839485_36839578_36839686_36839766_36843351_36843524_36845039_36845120_36849012_36849159_36849822_36849989_36851196_36851417_36852663_36852774_36856634_36856888_36857909_36857993_36859076_36859198_36861465_36861564_36862882_36862958_36864465_36864572_36866108_36866296_36867291_36867449_36868140
ENSMUSG00000024811.12_132	chr19	+	1510	1	ISM	ENSMUSG00000024811.12	ENSMUST00000025729.12	6481	27	57142	594	10801	-594	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTAGCATGGTAATTCAT	NA	False	NA	28	True	AATAAA	-17	NA	36868773	36870283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_36868800_36870300
ENSMUSG00000024812.12_1	chr19	-	4720	24	NIC	ENSMUSG00000024812.12	novel	4728	24	NA	NA	3	-7	combination_of_known_junctions	TRUE	canonical	0	0	junction_23	82.6461699898347	706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAGACATAAAAATGTG	NA	False	NA	NA	False	ATTAAA	-9	NA	24202387	24071875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24171072_24171194_24202214
ENSMUSG00000024812.12_24	chr19	-	3877	19	ISM	ENSMUSG00000024812.12	ENSMUST00000233027.2	4668	23	42984	6	11877	-6	3prime_fragment	FALSE	canonical	3	322	junction_16	32.6369857601184	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGACATAAAAATGTGT	NA	False	NA	NA	False	ATTAAA	-10	NA	24108569	24071874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218
ENSMUSG00000024812.12_5	chr19	-	4599	23	FSM	ENSMUSG00000024812.12	ENSMUST00000099558.5	4591	23	3	-11	3	-7	multi-exon	FALSE	canonical	0	0	junction_22	84.2977309185516	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAGACATAAAAATGTG	NA	False	NA	NA	False	ATTAAA	-9	NA	24202387	24071875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24202214
ENSMUSG00000024816.13_1	chr19	-	2904	11	NIC	ENSMUSG00000024816.13	novel	4504	11	NA	NA	-2	-1581	combination_of_known_junctions	FALSE	canonical	3	16	junction_10	59.3	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTCCTATCACTGGAC	4368	False	NA	-4	True	AATAAA	-17	NA	5925269	5901310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924837_5925118
ENSMUSG00000024816.13_2	chr19	-	2871	11	FSM	ENSMUSG00000024816.13	ENSMUST00000025728.13	4504	11	52	1581	17	-1581	multi-exon	FALSE	canonical	3	167	junction_1	18.6118241986109	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTCCTATCACTGGAC	4387	False	NA	-4	True	AATAAA	-17	NA	5925250	5901310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924823_5925118
ENSMUSG00000024817.14_0	chr19	+	3317	15	NIC	ENSMUSG00000024817.14	novel	3536	16	NA	NA	-46	-5	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	68.3643077301933	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAGAAAATGACGCATCCA	4039	False	NA	20	True	AATAAA	-10	NA	30007866	30071117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_30008332_30016463_30016698_30048642_30048862_30051293_30051404_30052483_30052671_30055413_30055538_30055939_30056048_30057238_30057344_30060133_30060241_30063645_30063809_30064575_30064717_30065878_30065976_30066585_30066744_30069440_30069540_30070117
ENSMUSG00000024817.14_1	chr19	+	3572	16	FSM	ENSMUSG00000024817.14	ENSMUST00000025739.14	3536	16	-38	2	-38	-2	multi-exon	FALSE	canonical	3	216	junction_4	27.709124048868	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATGACGCATCCAGCT	4047	False	NA	23	True	AATAAA	-13	NA	30007874	30071120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_30008332_30016463_30016698_30033634_30033895_30048642_30048862_30051293_30051404_30052483_30052671_30055413_30055538_30055939_30056048_30057238_30057344_30060133_30060241_30063645_30063809_30064575_30064717_30065878_30065976_30066585_30066744_30069440_30069540_30070117
ENSMUSG00000024817.14_4	chr19	+	3944	3	FSM	ENSMUSG00000024817.14	ENSMUST00000134518.8	3231	3	-37	-676	-37	676	multi-exon	FALSE	canonical	3	253	junction_1	21.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAAAAACAATGTA	4048	False	NA	NA	False	NA	NA	NA	30007875	30036888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_30008332_30016463_30016698_30033634
ENSMUSG00000024818.16_0	chr19	+	2046	6	FSM	ENSMUSG00000024818.16	ENSMUST00000025732.14	2480	6	435	-1	-376	1	multi-exon	FALSE	canonical	1	1	junction_4	2.63818119165458	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATGATCCCTTTCTGTC	3301	False	NA	NA	False	AATAAA	-18	NA	5928279	5935795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5928720_5929876_5929921_5930112_5930185_5930467_5930654_5934372_5934632_5934750
ENSMUSG00000024824.8_1	chr19	-	2073	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	2	6	2	-6	multi-exon	FALSE	canonical	3	334	junction_4	40.0660704337224	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTAACGCTGTGTGTTCCC	6000	False	NA	-6	True	AATAAA	-9	NA	4251633	4245200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ENSMUSG00000024824.8_13	chr19	-	2152	10	FSM	ENSMUSG00000024824.8	ENSMUST00000237467.2	2101	10	-33	-18	-4	-6	multi-exon	FALSE	canonical	3	364	junction_3	31.4889751429854	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTAACGCTGTGTGTTCCC	5994	False	NA	-6	True	AATAAA	-9	NA	4251639	4245200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ENSMUSG00000024826.16_1	chr19	-	2373	11	FSM	ENSMUSG00000024826.16	ENSMUST00000136983.8	3314	11	72	869	-7	2	multi-exon	FALSE	canonical	3	642	junction_2	68.1739686390634	1183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCTGGACAGTTTGTCT	1344	False	NA	-24	True	AATAAA	-16	NA	5962827	5947412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
ENSMUSG00000024827.11_0	chr19	-	3759	25	FSM	ENSMUSG00000024827.11	ENSMUST00000025778.9	3767	25	3	5	3	-5	multi-exon	FALSE	canonical	1	455	junction_4	183.478351735445	2694	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAATGCGAATTTCCCATT	NA	False	NA	-12	True	AATAAA	-11	NA	30152826	30075851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_30076511_30077236_30077318_30078142_30078316_30080378_30080475_30088072_30088185_30091121_30091264_30092587_30092701_30093798_30093949_30095942_30096069_30102121_30102198_30109071_30109215_30110879_30110922_30111094_30111180_30111589_30111688_30113903_30113985_30114492_30114633_30116674_30116781_30120759_30120857_30122546_30122744_30123017_30123166_30124568_30124647_30128821_30128987_30135913_30136050_30151823_30151903_30152390
ENSMUSG00000024829.13_1	chr19	+	796	7	FSM	ENSMUSG00000024829.13	ENSMUST00000025743.7	802	7	-1	7	-1	-1	multi-exon	FALSE	canonical	3	1715	junction_6	72.3058703625708	496	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGAGCCTGTGACTTGC	7370	False	NA	6	True	NA	NA	NA	3333058	3341194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983_3339088_3340976
ENSMUSG00000024830.18_1	chr19	-	1860	14	NIC	ENSMUSG00000024830.18	novel	1979	15	NA	NA	-5	0	intron_retention	FALSE	canonical	3	79	junction_5	10.8698595277881	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2782	False	NA	-2	True	AGTAAA	-14	NA	4213320	4206793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ENSMUSG00000024830.18_10	chr19	-	1627	14	NIC	ENSMUSG00000024830.18	novel	4586	15	NA	NA	7	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	27.2692036454243	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCAGAGTGGCTTTTGCCG	2794	False	NA	-4	True	AGTAAA	-12	NA	4213308	4206795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208827_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ENSMUSG00000024830.18_14	chr19	-	2001	15	FSM	ENSMUSG00000024830.18	ENSMUST00000130469.8	1979	15	-22	0	-6	0	multi-exon	FALSE	canonical	1	2	junction_9	32.5877935079116	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2781	False	NA	-2	True	AGTAAA	-14	NA	4213321	4206793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4209564_4209705_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ENSMUSG00000024830.18_3	chr19	-	1749	15	FSM	ENSMUSG00000024830.18	ENSMUST00000025749.15	4586	15	33	2804	-5	0	multi-exon	FALSE	canonical	2	38	junction_6	17.8245416691225	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2782	False	NA	-2	True	AGTAAA	-14	NA	4213320	4206793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208717_4208827_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ENSMUSG00000024830.18_4	chr19	-	2345	13	NIC	ENSMUSG00000024830.18	novel	2090	14	NA	NA	3	-2	intron_retention	FALSE	canonical	3	84	junction_12	10.3772587902586	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCAGAGTGGCTTTTGCCG	2776	False	NA	-4	True	AGTAAA	-12	NA	4213326	4206795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ENSMUSG00000024831.15_0	chr19	-	3630	15	FSM	ENSMUSG00000024831.15	ENSMUST00000025751.11	5569	15	89	1850	51	-2	multi-exon	FALSE	canonical	3	43	junction_2	8.84936294259626	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATTTGCTTGTGTTGGAG	NA	False	NA	-2	True	ATTAAA	-15	NA	3332928	3310925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_3311636_3311974_3312145_3314810_3315666_3316335_3316460_3317241_3317337_3318297_3318417_3318659_3318843_3321525_3321701_3322887_3323036_3324355_3324557_3326755_3326920_3329532_3329631_3329806_3329997_3331418_3331589_3332700
ENSMUSG00000024831.15_4	chr19	-	1339	3	ISM	ENSMUSG00000024831.15	ENSMUST00000025751.11	5569	15	17749	1849	2448	-1	3prime_fragment	FALSE	canonical	3	43	junction_2	16.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTGCTTGTGTTGGAGG	8452	False	NA	-1	True	ATTAAA	-16	NA	3315268	3310924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_3311636_3311974_3312145_3314810
ENSMUSG00000024831.15_5	chr19	-	2933	15	NNC	ENSMUSG00000024831.15	novel	5569	15	NA	NA	43	-1	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	16	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTGCTTGTGTTGGAGG	NA	False	NA	-1	True	ATTAAA	-16	NA	3332936	3310924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_3311636_3311974_3312145_3315516_3315666_3316335_3316460_3317241_3317337_3318297_3318417_3318659_3318843_3321525_3321701_3322887_3323036_3324355_3324557_3326755_3326920_3329532_3329631_3329806_3329997_3331418_3331589_3332700
ENSMUSG00000024833.16_0	chr19	-	2380	18	FSM	ENSMUSG00000024833.16	ENSMUST00000025752.15	2421	18	33	8	0	-8	multi-exon	FALSE	canonical	3	334	junction_17	37.0964328301216	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTGATTTTAATCTTTT	1659	False	NA	-8	True	AATAAA	-13	NA	6014197	5990577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
ENSMUSG00000024833.16_47	chr19	-	2350	18	FSM	ENSMUSG00000024833.16	ENSMUST00000165143.3	2391	18	41	0	2	0	multi-exon	FALSE	canonical	3	24	junction_1	92.2413338358681	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	1667	False	NA	NA	False	NA	NA	NA	6014189	5991134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5991581_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
ENSMUSG00000024833.16_6	chr19	-	2351	18	NIC	ENSMUSG00000024833.16	novel	2421	18	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	37	junction_17	91.7598792094124	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTGATTTTAATCTTTT	1659	False	NA	-8	True	AATAAA	-13	NA	6014197	5990577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011215_6013853
ENSMUSG00000024835.16_0	chr19	+	1841	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	-2	-5	combination_of_known_junctions	TRUE	canonical	3	402	junction_1	75.9439925208044	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCAGGTTTGACCTACT	3608	False	NA	11	True	AATAAA	-12	NA	4198650	4204027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ENSMUSG00000024835.16_3	chr19	+	1848	11	FSM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	33	7	-2	-5	multi-exon	FALSE	canonical	3	251	junction_1	114.751906302248	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCAGGTTTGACCTACT	3608	False	NA	11	True	AATAAA	-12	NA	4198650	4204027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ENSMUSG00000024835.16_5	chr19	+	1834	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	-2	-5	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	140.317354593079	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCAGGTTTGACCTACT	3608	False	NA	11	True	AATAAA	-12	NA	4198650	4204027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_4198722_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ENSMUSG00000024837.16_0	chr19	+	2256	5	FSM	ENSMUSG00000024837.16	ENSMUST00000025755.11	2340	5	82	2	-6	-2	multi-exon	FALSE	canonical	3	122	junction_3	4.08503365959205	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCTTGTGTGTATATT	NA	False	NA	10	True	AATAAA	-18	NA	25483063	25581691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_25483566_25487043_25487228_25523182_25523467_25537230_25537376_25580550
ENSMUSG00000024837.16_9	chr19	+	831	1	ISM	ENSMUSG00000024837.16	ENSMUST00000025755.11	2340	5	97880	1	97791	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTTGTGTGTATATTT	NA	False	NA	11	True	AATAAA	-19	NA	25580861	25581692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_25580900_25581700
ENSMUSG00000024841.9_0	chr19	+	1024	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	253	1279	-28	-1279	multi-exon	TRUE	canonical	3	703	junction_2	59.7581793564697	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGGTGTCTGAGTGGCT	2045	False	NA	21	True	ATTAAA	-21	NA	5417021	5420275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUSG00000024841.9_9	chr19	+	792	5	ISM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	1332	1279	1051	-1279	3prime_fragment	FALSE	canonical	3	703	junction_1	61.8036204441131	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGGTGTCTGAGTGGCT	3124	False	NA	21	True	ATTAAA	-21	NA	5418100	5420275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUSG00000024843.16_1	chr19	+	2534	11	FSM	ENSMUSG00000024843.16	ENSMUST00000072055.13	2549	11	12	3	-1	1	multi-exon	FALSE	canonical	3	55	junction_2	49.9220392211696	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCAGACTGTTACCCTT	5756	False	NA	3	True	AATAAA	-14	NA	3901808	3944366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3902414_3914647_3914760_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
ENSMUSG00000024843.16_2	chr19	+	2622	13	FSM	ENSMUSG00000024843.16	ENSMUST00000128694.8	2683	13	61	0	2	0	multi-exon	FALSE	canonical	3	10	junction_2	76.2468123195251	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTCAGACTGTTACCCT	5781	False	NA	2	True	AATAAA	-13	NA	3901833	3944365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3902414_3914647_3914760_3921002_3921063_3925734_3925789_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
ENSMUSG00000024843.16_20	chr19	+	2762	14	NIC	ENSMUSG00000024843.16	novel	2683	13	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	87.0287308881383	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTGTTCTCAGACTGTT	5759	False	NA	-3	True	AATAAA	-8	NA	3901811	3944360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_3902414_3914647_3914760_3921002_3921063_3925734_3925789_3931997_3932121_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
ENSMUSG00000024843.16_3	chr19	+	2584	12	FSM	ENSMUSG00000024843.16	ENSMUST00000025760.13	2319	12	-262	-3	4	0	multi-exon	FALSE	canonical	3	76	junction_2	51.157187679149	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGACTGTTACCCTTC	5761	False	NA	4	True	AATAAA	-15	NA	3901813	3944367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3902414_3914647_3914760_3925734_3925789_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
ENSMUSG00000024843.16_34	chr19	+	4948	10	ISM	ENSMUSG00000024843.16	ENSMUST00000025760.13	2319	12	20583	-3	-2005	0	3prime_fragment	FALSE	canonical	3	87	junction_1	43.04892422051	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGACTGTTACCCTTC	9608	False	NA	4	True	AATAAA	-15	NA	3922658	3944367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_3925789_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
ENSMUSG00000024843.16_37	chr19	+	3743	11	NIC	ENSMUSG00000024843.16	novel	2683	13	NA	NA	-679	0	intron_retention	FALSE	canonical	3	16	junction_1	75.6357058537831	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTCAGACTGTTACCCT	NA	False	NA	2	True	AATAAA	-13	NA	3923984	3944365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_3925789_3931997_3932121_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
ENSMUSG00000024844.16_0	chr19	-	728	3	FSM	ENSMUSG00000024844.16	ENSMUST00000025762.16	1261	3	530	3	-32	0	multi-exon	FALSE	canonical	3	4588	junction_2	727	1067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTGTTCTGTGTCA	8711	False	NA	-9	True	AATAAA	-14	NA	5416666	5414668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5415187_5415845_5415985_5416595
ENSMUSG00000024844.16_5	chr19	-	741	3	FSM	ENSMUSG00000024844.16	ENSMUST00000170010.3	758	3	17	0	17	0	multi-exon	FALSE	canonical	3	1351	junction_2	2345.5	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTGTTCTGTGTCA	9003	False	NA	-9	True	AATAAA	-14	NA	5416374	5414668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5415187_5415845_5415985_5416290
ENSMUSG00000024845.20_0	chr19	+	925	7	FSM	ENSMUSG00000024845.20	ENSMUST00000140267.10	938	7	13	0	-3	0	multi-exon	FALSE	canonical	3	568	junction_2	70.8411760364142	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4383	False	NA	NA	False	AATAAA	-16	NA	4175971	4181726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUSG00000024845.20_1	chr19	+	937	7	FSM	ENSMUSG00000024845.20	ENSMUST00000148807.11	937	7	-8	8	-4	0	multi-exon	FALSE	canonical	3	163	junction_2	194.337907321815	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4382	False	NA	NA	False	AATAAA	-16	NA	4175970	4181726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUSG00000024845.20_3	chr19	+	882	6	FSM	ENSMUSG00000024845.20	ENSMUST00000150627.11	1472	6	10	580	-5	0	multi-exon	FALSE	canonical	3	226	junction_4	186.716255318063	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4381	False	NA	NA	False	AATAAA	-16	NA	4175969	4181726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181227_4181282_4181360
ENSMUSG00000024845.20_4	chr19	+	1000	5	FSM	ENSMUSG00000024845.20	ENSMUST00000139718.10	1012	5	13	-1	-3	0	multi-exon	FALSE	canonical	3	226	junction_3	207.505421615918	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4383	False	NA	NA	False	AATAAA	-16	NA	4175971	4181726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181227_4181282_4181360
ENSMUSG00000024845.20_5	chr19	+	892	6	FSM	ENSMUSG00000024845.20	ENSMUST00000140405.10	874	6	-18	0	-4	0	multi-exon	FALSE	canonical	3	163	junction_2	248.896283620306	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4382	False	NA	NA	False	AATAAA	-16	NA	4175970	4181726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181227_4181282_4181360
ENSMUSG00000024845.20_9	chr19	+	1046	6	FSM	ENSMUSG00000024845.20	ENSMUST00000130619.11	1615	6	11	558	-4	0	multi-exon	FALSE	canonical	3	568	junction_2	76.3952878127964	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4382	False	NA	NA	False	AATAAA	-16	NA	4175970	4181726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUSG00000024847.16_0	chr19	-	1232	6	FSM	ENSMUSG00000024847.16	ENSMUST00000025767.14	1261	6	30	-1	30	1	multi-exon	FALSE	canonical	3	269	junction_5	15.3310143173894	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTTTGCAGAACTAATCT	3932	False	NA	-20	True	TATAAA	-18	NA	4171545	4164462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335
ENSMUSG00000024851.15_1	chr19	+	4191	24	FSM	ENSMUSG00000024851.15	ENSMUST00000049658.14	4206	24	14	1	14	-1	multi-exon	FALSE	canonical	1	1	junction_9	2.52323793539946	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGGGCCTTCCTGTCTG	1321	False	NA	NA	False	AATAAA	-13	NA	4150011	4163964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4150214_4151143_4151263_4152672_4152888_4152974_4153097_4153260_4153486_4154813_4155141_4155229_4155326_4155414_4155523_4156563_4156626_4156711_4156963_4157785_4157976_4158085_4158194_4158422_4158581_4158664_4158868_4159825_4159997_4160494_4160660_4160841_4160991_4161078_4161190_4161581_4161699_4161865_4162015_4162100_4162251_4162326_4162511_4162747_4162877_4163484
ENSMUSG00000024851.15_8	chr19	+	4989	23	FSM	ENSMUSG00000024851.15	ENSMUST00000151957.8	4981	23	-20	12	-20	-12	multi-exon	FALSE	canonical	1	1	junction_9	2.56526382900408	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGCACTCTACTGTGGGC	1335	False	NA	NA	False	AATAAA	-2	NA	4150025	4163953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4150214_4151143_4151263_4152672_4152888_4152974_4153097_4153260_4153486_4154813_4155141_4155229_4155326_4155414_4155523_4156563_4156626_4156711_4157976_4158085_4158194_4158422_4158581_4158664_4158868_4159825_4159997_4160494_4160660_4160841_4160991_4161078_4161190_4161581_4161699_4161865_4162015_4162100_4162251_4162326_4162511_4162747_4162877_4163484
ENSMUSG00000024853.11_0	chr19	-	3174	21	FSM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	45	3	-2	-3	multi-exon	TRUE	canonical	3	1448	junction_15	340.757138589935	2748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTACTGGCTAACTACTT	3911	False	NA	-28	True	AATAAA	-15	NA	5345438	5323962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ENSMUSG00000024853.11_10	chr19	-	673	2	ISM	ENSMUSG00000024853.11	ENSMUST00000237781.2	1894	8	9537	3	9537	-3	3prime_fragment	FALSE	canonical	3	3092	junction_1	0	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTACTGGCTAACTACTT	NA	False	NA	-28	True	AATAAA	-15	NA	5324899	5323962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5324556_5324819
ENSMUSG00000024853.11_7	chr19	-	3171	21	NIC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	3	100	junction_16	496.484226839081	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTACTGGCTAACTACTT	3911	False	NA	-28	True	AATAAA	-15	NA	5345438	5323962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338439_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ENSMUSG00000024854.5_0	chr19	+	870	4	FSM	ENSMUSG00000024854.5	ENSMUST00000025773.5	913	4	40	3	40	0	multi-exon	FALSE	canonical	3	47	junction_3	2.16024689946929	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCTGACCTTACATCTC	NA	False	NA	3	True	AATAAA	-15	NA	4281992	4283685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4282243_4282516_4282607_4282801_4282914_4283267
ENSMUSG00000024855.11_2	chr19	-	4316	24	FSM	ENSMUSG00000024855.11	ENSMUST00000025786.9	4869	24	20	533	3	-533	multi-exon	FALSE	canonical	3	55	junction_19	9.30455099331212	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAACTGCCTTGGGCTCCT	NA	False	NA	-9	True	AATAAA	-14	NA	5323127	5183718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5185054_5185147_5185268_5186720_5186948_5188957_5189094_5189307_5189351_5191187_5191231_5191634_5191738_5192271_5192383_5192543_5192699_5193378_5193486_5193802_5193908_5194827_5194964_5195098_5195215_5197154_5197236_5202301_5202396_5202687_5202849_5203691_5203752_5205716_5205798_5205883_5205976_5206384_5206530_5209995_5210122_5210745_5210836_5217951_5218040_5322566
ENSMUSG00000024856.11_0	chr19	+	902	4	FSM	ENSMUSG00000024856.11	ENSMUST00000025779.11	1080	4	171	7	-48	0	multi-exon	FALSE	canonical	3	620	junction_3	36.1754981536767	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCAGCCTTTCTGTG	7047	False	NA	27	True	AATAAA	-16	NA	4147352	4149010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4147508_4147816_4147918_4148004_4148138_4148497
ENSMUSG00000024856.11_1	chr19	+	844	4	FSM	ENSMUSG00000024856.11	ENSMUST00000174799.2	843	4	-1	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	272.140078309356	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCAGCCTTTCTGTG	7095	False	NA	27	True	AATAAA	-16	NA	4147400	4149010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4147508_4147816_4147908_4148004_4148138_4148497
ENSMUSG00000024856.11_2	chr19	+	1664	1	NIC	ENSMUSG00000024856.11	novel	1080	4	NA	NA	-54	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCAGCCTTTCTGTG	7041	False	NA	27	True	AATAAA	-16	NA	4147346	4149010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_4147300_4149000
ENSMUSG00000024856.11_3	chr19	+	1264	3	FSM	ENSMUSG00000024856.11	ENSMUST00000174514.2	669	3	-54	-541	-54	-4	multi-exon	FALSE	canonical	3	655	junction_1	26.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATTCTCTCAGCCTTTC	7041	False	NA	23	True	AATAAA	-12	NA	4147346	4149006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4147508_4147816_4147918_4148004
ENSMUSG00000024856.11_4	chr19	+	1077	4	FSM	ENSMUSG00000024856.11	ENSMUST00000172914.2	1089	4	3	9	2	0	multi-exon	TRUE	canonical	3	90	junction_1	272.960721635102	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCAGCCTTTCTGTG	7098	False	NA	27	True	AATAAA	-16	NA	4147403	4149010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4147734_4147816_4147918_4148004_4148138_4148497
ENSMUSG00000024858.15_0	chr19	-	3455	21	FSM	ENSMUSG00000024858.15	ENSMUST00000088737.11	3376	21	-81	2	-81	-2	multi-exon	FALSE	canonical	3	202	junction_18	28.8679753360017	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCTCGCTGTCTCAGA	NA	False	NA	-11	True	TATAAA	-11	NA	4356331	4336031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4337293_4337380_4337495_4337585_4337723_4337850_4338014_4338439_4338536_4338619_4338687_4339340_4339442_4339700_4339768_4339925_4340034_4340101_4340197_4340422_4340554_4340631_4340711_4340799_4340900_4341266_4341359_4341617_4341670_4342197_4342260_4342389_4342465_4342571_4342674_4342794_4342869_4344877_4344955_4355929
ENSMUSG00000024858.15_6	chr19	-	859	1	ISM	ENSMUSG00000024858.15	ENSMUST00000025791.12	3182	22	19095	1	989	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTCGCTGTCTCAGACT	NA	False	NA	-9	True	TATAAA	-13	NA	4336888	4336029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4336000_4336900
ENSMUSG00000024858.15_7	chr19	-	2337	22	NNC	ENSMUSG00000024858.15	novel	3376	21	NA	NA	-80	-396	at_least_one_novel_splicesite	FALSE	non_canonical	2	17	junction_21	56.2832164460662	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCGGAAAATGTTTTATT	NA	False	NA	-7	True	TATAAA	-44	NA	4356330	4337042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_4337293_4337380_4337495_4337585_4337723_4337850_4338014_4338439_4338536_4338619_4338687_4339340_4339442_4339700_4339768_4339925_4340034_4340101_4340197_4340422_4340554_4340631_4340711_4340799_4340900_4341266_4341359_4341617_4341670_4342197_4342260_4342389_4342465_4342571_4342674_4342794_4342869_4344877_4344955_4355929_4356054_4356159
ENSMUSG00000024862.17_1	chr19	-	2931	16	NIC	ENSMUSG00000024862.17	novel	2940	16	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_15	17.0507738501479	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGGGCTTGTTTTGAGGA	NA	False	NA	-3	True	AATAAA	-16	NA	5168315	5157775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167498_5168149
ENSMUSG00000024862.17_10	chr19	-	2892	16	FSM	ENSMUSG00000024862.17	ENSMUST00000116563.8	3169	16	273	4	10	-2	multi-exon	FALSE	canonical	3	42	junction_15	16.0036107036992	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCGGGCTTGTTTTGAG	NA	False	NA	-5	True	AATAAA	-14	NA	5168315	5157777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167461_5168149
ENSMUSG00000024862.17_2	chr19	-	3344	15	ISM	ENSMUSG00000024862.17	ENSMUST00000116563.8	3169	16	512	2	249	0	3prime_fragment	FALSE	canonical	3	60	junction_9	12.2101078903455	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGGGCTTGTTTTGAGGA	NA	False	NA	-3	True	AATAAA	-16	NA	5168076	5157775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221
ENSMUSG00000024862.17_9	chr19	-	2649	15	NIC	ENSMUSG00000024862.17	novel	3169	16	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	25.1344344658552	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGGGCTTGTTTTGAGGA	NA	False	NA	-3	True	AATAAA	-16	NA	5168309	5157775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5168149
ENSMUSG00000024866.11_0	chr19	+	1277	8	FSM	ENSMUSG00000024866.11	ENSMUST00000236510.2	1284	8	5	2	4	-2	multi-exon	FALSE	canonical	3	15	junction_1	10.3332236114429	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGACAGTTCTTGTTC	NA	False	NA	1	True	TATAAA	-15	NA	4036574	4040003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4036612_4036822_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
ENSMUSG00000024866.11_1	chr19	+	1272	8	NIC	ENSMUSG00000024866.11	novel	1284	8	NA	NA	4	-2	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	12.795088343356	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGACAGTTCTTGTTC	NA	False	NA	1	True	TATAAA	-15	NA	4036574	4040003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_4036612_4036827_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
ENSMUSG00000024866.11_2	chr19	+	1146	7	FSM	ENSMUSG00000024866.11	ENSMUST00000235612.2	1142	7	-8	4	4	-4	multi-exon	FALSE	canonical	1	7	junction_1	13.4752860204648	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAATTGACAGTTCTTGT	NA	False	NA	-1	True	TATAAA	-13	NA	4036574	4040001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4036612_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
ENSMUSG00000024866.11_3	chr19	+	1243	7	ISM	ENSMUSG00000024866.11	ENSMUST00000236510.2	1284	8	250	2	159	-2	3prime_fragment	FALSE	canonical	3	28	junction_3	7.71722460186015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGACAGTTCTTGTTC	NA	False	NA	1	True	TATAAA	-15	NA	4036819	4040003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
ENSMUSG00000024867.15_0	chr19	-	2895	15	FSM	ENSMUSG00000024867.15	ENSMUST00000025800.15	2573	15	-324	2	-324	-2	multi-exon	FALSE	canonical	3	28	junction_9	5.473498303048	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGGTCATACATTGAT	NA	False	NA	-2	True	AATAAA	-14	NA	24533560	24272159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_24272919_24281395_24281511_24323600_24323746_24327497_24327654_24332481_24332567_24335393_24335443_24335574_24335659_24337303_24337516_24356165_24356466_24359051_24359205_24367707_24367826_24374379_24374511_24416416_24416486_24420965_24421053_24533128
ENSMUSG00000024867.15_11	chr19	-	2494	14	ISM	ENSMUSG00000024867.15	ENSMUST00000025800.15	2573	15	-142	8698	-142	-8095	5prime_fragment	FALSE	canonical	3	28	junction_8	5.63694491094193	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCCCTGTGCAGCTCAAA	NA	False	NA	NA	False	ATTAAA	-21	NA	24533378	24280855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_24281511_24323600_24323746_24327497_24327654_24332481_24332567_24335393_24335443_24335574_24335659_24337303_24337516_24356165_24356466_24359051_24359205_24367707_24367826_24374379_24374511_24416416_24416486_24420965_24421053_24533128
ENSMUSG00000024867.15_12	chr19	-	3478	7	ISM	ENSMUSG00000024867.15	ENSMUST00000025800.15	2573	15	-339	81835	-339	19532	5prime_fragment	FALSE	canonical	3	28	junction_1	6.34209919681348	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAGAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	24533575	24353992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_24356466_24359051_24359205_24367707_24367826_24374379_24374511_24416416_24416486_24420965_24421053_24533128
ENSMUSG00000024867.15_16	chr19	-	405	1	ISM	ENSMUSG00000024867.15	ENSMUST00000112673.9	2387	14	260642	2	22142	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGGTCATACATTGAT	8019	False	NA	-2	True	AATAAA	-14	NA	24272564	24272159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_24272200_24272600
ENSMUSG00000024867.15_6	chr19	-	2811	14	NIC	ENSMUSG00000024867.15	novel	2573	15	NA	NA	-355	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	11.5783924444472	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGGTCATACATTGAT	NA	False	NA	-2	True	AATAAA	-14	NA	24533591	24272159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_24272919_24323600_24323746_24327497_24327654_24332481_24332567_24335393_24335443_24335574_24335659_24337303_24337516_24356165_24356466_24359051_24359205_24367707_24367826_24374379_24374511_24416416_24416486_24420965_24421053_24533128
ENSMUSG00000024867.15_7	chr19	-	2477	14	NIC	ENSMUSG00000024867.15	novel	2573	15	NA	NA	-6	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	11.6659622216178	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTCTGGTCATACATTGA	NA	False	NA	-3	True	AATAAA	-13	NA	24533212	24272160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_24272919_24281395_24281511_24323600_24323746_24327497_24327654_24332481_24332567_24335393_24335443_24335574_24335659_24337303_24337516_24356165_24356466_24359051_24359205_24367707_24367826_24374379_24374511_24420965_24421053_24533128
ENSMUSG00000024869.11_1	chr19	+	1076	1	NIC	ENSMUSG00000024869.11	novel	3904	9	NA	NA	4083	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGACAGAATAAGATAAAAAA	7642	False	NA	NA	False	NA	NA	NA	4054708	4055784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_4054700_4055800
ENSMUSG00000024870.7_0	chr19	-	1830	6	FSM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	77	6	10	-6	multi-exon	FALSE	canonical	3	994	junction_1	78.6628247649422	1292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCGGTGGTGACTGA	1578	False	NA	-6	True	AATAAA	-37	NA	5157023	5149238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5150601_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
ENSMUSG00000024870.7_3	chr19	-	1123	1	ISM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	6739	6	5912	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCGGTGGTGACTGA	8240	False	NA	-6	True	AATAAA	-37	NA	5150361	5149238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5149200_5150400
ENSMUSG00000024873.8_0	chr19	-	1325	6	FSM	ENSMUSG00000024873.8	ENSMUST00000025805.8	1343	6	7	11	7	-11	multi-exon	FALSE	canonical	3	9	junction_5	5.2687759489278	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACACACAAGCCCCAATT	NA	False	NA	-11	True	AATAAA	-7	NA	5148542	5142906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5143526_5143699_5143844_5143947_5144061_5144311_5144360_5144759_5144829_5148210
ENSMUSG00000024875.6_0	chr19	+	1099	8	FSM	ENSMUSG00000024875.6	ENSMUST00000025811.6	1488	8	11	378	1	2	multi-exon	FALSE	canonical	3	484	junction_7	32.2509294281512	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGGCTTGACCCTGGTT	NA	False	NA	24	True	NA	NA	NA	5138583	5142531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142156_5142251_5142329
ENSMUSG00000024878.10_1	chr19	-	1413	15	FSM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	1	515	1	-515	multi-exon	FALSE	canonical	3	171	junction_14	17.2858618647773	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATATCCTCTGGAGGT	NA	False	NA	-36	True	AGTAAA	-28	NA	24938964	24897794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938747
ENSMUSG00000024878.10_7	chr19	-	1480	15	NIC	ENSMUSG00000024878.10	novel	1929	15	NA	NA	1	-515	combination_of_known_junctions	FALSE	canonical	3	7	junction_14	49.7256247331498	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATATCCTCTGGAGGT	NA	False	NA	-36	True	AGTAAA	-28	NA	24938964	24897794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938680
ENSMUSG00000024883.9_1	chr19	+	4370	10	NIC	ENSMUSG00000024883.9	novel	4184	10	NA	NA	91	-5	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	8.35330939076111	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGACTGAAGCTTGATAAC	NA	False	NA	-1	True	NA	NA	NA	5100599	5107094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5100900_5101101_5101283_5101381_5101497_5101585_5101659_5101768_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883_5104036_5104816
ENSMUSG00000024883.9_10	chr19	+	2739	8	NIC	ENSMUSG00000024883.9	novel	4184	10	NA	NA	100	279	intron_retention	FALSE	canonical	2	8	junction_1	9.37647947509825	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCACTTTTTGTCTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	5100608	5104438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5100900_5101101_5101283_5101381_5101497_5101585_5101659_5101768_5101861_5102003_5103304_5103626_5103759_5103883
ENSMUSG00000024883.9_11	chr19	+	4966	9	ISM	ENSMUSG00000024883.9	ENSMUST00000025818.8	4184	10	-4	3	-1	-3	intron_retention	FALSE	canonical	3	10	junction_1	8.3357288223646	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTGAAGCTTGATAACTA	NA	False	NA	1	True	NA	NA	NA	5100856	5107096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5100970_5101101_5101283_5101381_5101497_5101585_5101659_5101768_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883
ENSMUSG00000024883.9_17	chr19	+	3579	5	ISM	ENSMUSG00000024883.9	ENSMUST00000025818.8	4184	10	1175	3	-1097	-3	3prime_fragment	FALSE	canonical	3	24	junction_2	5.52268050859363	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTGAAGCTTGATAACTA	NA	False	NA	1	True	NA	NA	NA	5102035	5107096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5102745_5102997_5103304_5103626_5103759_5103883_5104036_5104816
ENSMUSG00000024883.9_18	chr19	+	1328	1	ISM	ENSMUSG00000024883.9	ENSMUST00000225427.2	4503	10	5262	1	2638	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGAAGCTTGATAACTAGA	NA	False	NA	3	True	NA	NA	NA	5105770	5107098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5105800_5107100
ENSMUSG00000024883.9_20	chr19	+	5154	9	NIC	ENSMUSG00000024883.9	novel	4184	10	NA	NA	88	-5	intron_retention	FALSE	canonical	2	8	junction_1	8.83795083715677	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGACTGAAGCTTGATAAC	NA	False	NA	-1	True	NA	NA	NA	5100596	5107094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5100900_5101101_5101283_5101381_5101497_5101585_5101659_5101768_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883
ENSMUSG00000024883.9_21	chr19	+	4074	9	ISM	ENSMUSG00000024883.9	ENSMUST00000025818.8	4184	10	241	1	241	-1	3prime_fragment	FALSE	canonical	3	23	junction_2	5.58877222652704	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGAAGCTTGATAACTAGA	NA	False	NA	3	True	NA	NA	NA	5101101	5107098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5101283_5101381_5101497_5101585_5101659_5101768_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883_5104036_5104816
ENSMUSG00000024883.9_6	chr19	+	4437	10	NIC	ENSMUSG00000024883.9	novel	4184	10	NA	NA	87	-1	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	9.88826464946088	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGAAGCTTGATAACTAGA	NA	False	NA	3	True	NA	NA	NA	5100595	5107098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5100970_5101112_5101283_5101381_5101497_5101585_5101659_5101768_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883_5104036_5104816
ENSMUSG00000024883.9_7	chr19	+	4390	10	FSM	ENSMUSG00000024883.9	ENSMUST00000025818.8	4184	10	-211	5	141	-5	multi-exon	FALSE	canonical	3	10	junction_1	7.87557562074193	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGACTGAAGCTTGATAAC	NA	False	NA	-1	True	NA	NA	NA	5100649	5107094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5100970_5101101_5101283_5101381_5101497_5101585_5101659_5101768_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883_5104036_5104816
ENSMUSG00000024885.10_1	chr19	-	1903	10	NNC	ENSMUSG00000024885.10	novel	1924	10	NA	NA	-1048	-49	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_7	2.58198889747161	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGCCTATCGTCGTGG	NA	False	NA	NA	False	AATAAA	-12	NA	3980856	3963539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_3964085_3965293_3965394_3968041_3968209_3968602_3968990_3970796_3970879_3971182_3971269_3971472_3971594_3971696_3971808_3973738_3973902_3980715
ENSMUSG00000024885.10_4	chr19	-	1805	10	FSM	ENSMUSG00000024885.10	ENSMUST00000051803.8	1924	10	67	52	-14	-52	multi-exon	FALSE	canonical	2	3	junction_9	3.58322566591047	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACAGCCTATCGTCG	NA	False	NA	NA	False	AATAAA	-9	NA	3979741	3963542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_3964085_3965293_3965394_3968041_3968209_3968602_3968990_3970796_3970879_3971182_3971269_3971472_3971594_3971696_3971808_3973738_3973902_3979695
ENSMUSG00000024889.6_0	chr19	-	1413	8	FSM	ENSMUSG00000024889.6	ENSMUST00000025823.6	1425	8	11	1	11	-1	multi-exon	FALSE	canonical	3	266	junction_6	48.136286113662	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATGGTCTTGGAACCTT	NA	False	NA	-14	True	ATTAAA	-16	NA	4675657	4672623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220_4675324_4675460
ENSMUSG00000024889.6_1	chr19	-	1404	8	NIC	ENSMUSG00000024889.6	novel	1425	8	NA	NA	16	-1	combination_of_known_junctions	FALSE	canonical	3	108	junction_6	91.2554163894295	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATGGTCTTGGAACCTT	NA	False	NA	-14	True	ATTAAA	-16	NA	4675652	4672623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675121_4675220_4675324_4675460
ENSMUSG00000024889.6_15	chr19	-	1424	8	NIC	ENSMUSG00000024889.6	novel	1455	8	NA	NA	-16	-1	combination_of_known_junctions	TRUE	canonical	3	51	junction_4	128.932983699728	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATGGTCTTGGAACCTT	NA	False	NA	-14	True	ATTAAA	-16	NA	4675647	4672623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674687_4674792_4675040_4675121_4675220_4675324_4675460
ENSMUSG00000024889.6_3	chr19	-	1440	8	FSM	ENSMUSG00000024889.6	ENSMUST00000225476.2	1455	8	11	4	10	0	multi-exon	FALSE	canonical	3	51	junction_4	109.573011722592	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGTCTTGGAACCTTG	NA	False	NA	-13	True	ATTAAA	-17	NA	4675658	4672622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674687_4674792_4675040_4675125_4675220_4675324_4675460
ENSMUSG00000024889.6_9	chr19	-	1549	7	FSM	ENSMUSG00000024889.6	ENSMUST00000224675.3	862	7	-308	-379	13	0	multi-exon	FALSE	canonical	3	266	junction_6	51.0315806361338	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGTCTTGGAACCTTG	NA	False	NA	-13	True	ATTAAA	-17	NA	4675655	4672622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220
ENSMUSG00000024891.7_0	chr19	+	2360	12	FSM	ENSMUSG00000024891.7	ENSMUST00000236152.2	2619	12	251	8	-3	0	multi-exon	FALSE	canonical	3	72	junction_1	10.4311992290135	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	4309	False	NA	13	True	ATTAAA	-14	NA	5074138	5081992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ENSMUSG00000024891.7_19	chr19	+	1675	7	ISM	ENSMUSG00000024891.7	ENSMUST00000237371.2	2362	12	3229	0	1166	0	3prime_fragment	FALSE	canonical	3	79	junction_3	8.67307455417179	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	7541	False	NA	13	True	ATTAAA	-14	NA	5077370	5081992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ENSMUSG00000024891.7_3	chr19	+	2226	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	23.4795655837156	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	4308	False	NA	13	True	ATTAAA	-14	NA	5074137	5081992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ENSMUSG00000024891.7_6	chr19	+	2278	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	24.5063257139866	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	4309	False	NA	13	True	ATTAAA	-14	NA	5074138	5081992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5074306_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ENSMUSG00000024892.18_1	chr19	+	4027	21	FSM	ENSMUSG00000024892.18	ENSMUST00000224726.3	4061	21	31	3	-9	-3	multi-exon	FALSE	canonical	3	75	junction_8	10.9748576300561	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTAGGTCATGTACAGTC	1732	False	NA	7	True	AATAAA	-22	NA	4560544	4671704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4560610_4565681_4565719_4651627_4651764_4651892_4652078_4652237_4652404_4652501_4652648_4652785_4652904_4653087_4653240_4654492_4654612_4657559_4657723_4659891_4660075_4667607_4667753_4667992_4668083_4668169_4668549_4668985_4669227_4669347_4669598_4669807_4670053_4670141_4670322_4670394_4670644_4670847_4670989_4671067
ENSMUSG00000024892.18_14	chr19	+	3570	17	ISM	ENSMUSG00000024892.18	ENSMUST00000113825.4	4044	20	7898	22	7836	-3	3prime_fragment	FALSE	canonical	3	75	junction_4	11.8610114977602	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTAGGTCATGTACAGTC	NA	False	NA	7	True	AATAAA	-22	NA	4652271	4671704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4652404_4652501_4652648_4652785_4652904_4653087_4653240_4654492_4654612_4657559_4657723_4659891_4660075_4667607_4667753_4667992_4668083_4668169_4668549_4668985_4669227_4669347_4669598_4669807_4670053_4670141_4670322_4670394_4670644_4670847_4670989_4671067
ENSMUSG00000024896.10_0	chr19	+	2445	5	FSM	ENSMUSG00000024896.10	ENSMUST00000025827.10	2613	5	157	11	3	-11	multi-exon	FALSE	canonical	3	240	junction_4	28.9687331445474	556	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACCAAGTCATCTCTGCA	NA	False	NA	12	True	AATAAA	-19	NA	32463325	32492753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_32463960_32468737_32468936_32471270_32471369_32475783_32475918_32491372
ENSMUSG00000024900.6_19	chr19	+	4222	18	ISM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	25905	4	7563	-4	3prime_fragment	FALSE	canonical	3	314	junction_9	25.902665825853	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACATCATCTGTCCCTGT	9603	False	NA	14	True	AATAAA	-16	NA	3399189	3435729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_3399343_3402484_3402625_3406316_3406489_3408175_3408278_3412084_3412223_3414477_3414556_3415674_3415783_3416329_3416418_3418854_3419051_3420706_3420896_3421571_3421678_3425092_3425210_3426410_3426576_3428367_3428503_3430016_3430170_3431609_3431724_3431931_3432025_3433754
ENSMUSG00000024900.6_3	chr19	+	4250	19	FSM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	63	4	0	-4	multi-exon	TRUE	canonical	3	230	junction_1	37.3718386086055	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACATCATCTGTCCCTGT	NA	False	NA	14	True	AATAAA	-16	NA	3373347	3435729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3373375_3399188_3399343_3402484_3402625_3406316_3406489_3408175_3408278_3412084_3412223_3414477_3414556_3415674_3415783_3416329_3416418_3418854_3419051_3420706_3420896_3421571_3421678_3425092_3425210_3426410_3426576_3428367_3428503_3430016_3430170_3431609_3431724_3431931_3432025_3433754
ENSMUSG00000024900.6_43	chr19	+	1458	1	ISM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	60987	4	7928	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACATCATCTGTCCCTGT	NA	False	NA	14	True	AATAAA	-16	NA	3434271	3435729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_3434300_3435700
ENSMUSG00000024901.16_0	chr19	-	5541	6	NIC	ENSMUSG00000024901.16	novel	4110	7	NA	NA	4	-4	intron_retention	FALSE	canonical	1	3	junction_3	4.35430821141545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGCCGCTGGTAAAGGAC	8770	False	NA	NA	False	NA	NA	NA	4993091	4979748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4984584_4984930_4985126_4986145_4986248_4988076_4988207_4991787_4991941_4992965
ENSMUSG00000024901.16_2	chr19	-	4037	7	FSM	ENSMUSG00000024901.16	ENSMUST00000025834.15	4110	7	70	3	10	-3	multi-exon	FALSE	canonical	1	2	junction_1	5.01386965216377	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCCGCTGGTAAAGGACT	8776	False	NA	NA	False	NA	NA	NA	4993085	4979747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4982896_4984394_4984584_4984930_4985126_4986145_4986248_4988076_4988207_4991787_4991941_4992965
ENSMUSG00000024901.16_3	chr19	-	3003	1	ISM	ENSMUSG00000024901.16	ENSMUST00000025834.15	4110	7	10406	2	5907	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCGCTGGTAAAGGACTT	7219	False	NA	NA	False	NA	NA	NA	4982749	4979746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4979700_4982700
ENSMUSG00000024902.6_0	chr19	+	811	5	FSM	ENSMUSG00000024902.6	ENSMUST00000025836.6	3045	5	181	2053	-2	2	multi-exon	FALSE	canonical	3	572	junction_2	14.5859521458148	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCTCAGCTTCTCTCCTG	3724	False	NA	12	True	AATAAA	-15	NA	5012355	5014974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013694_5014701
ENSMUSG00000024902.6_4	chr19	+	1801	4	FSM	ENSMUSG00000024902.6	ENSMUST00000236354.2	687	4	-20	-1094	-5	-1	multi-exon	FALSE	canonical	3	572	junction_2	16.5730705262081	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAACTCTCAGCTTCTCTC	3739	False	NA	9	True	AATAAA	-12	NA	5012370	5014971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533
ENSMUSG00000024902.6_5	chr19	+	838	5	FSM	ENSMUSG00000024902.6	ENSMUST00000236917.2	813	5	-26	1	-8	-1	multi-exon	FALSE	canonical	2	9	junction_4	253.71871728353	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAACTCTCAGCTTCTCTC	3718	False	NA	9	True	AATAAA	-12	NA	5012349	5014971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013718_5014701
ENSMUSG00000024905.16_0	chr19	+	1760	9	FSM	ENSMUSG00000024905.16	ENSMUST00000025840.16	2234	9	31	443	3	91	multi-exon	FALSE	canonical	1	2	junction_6	4.715334028465	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTTGTTATGTGTTTGC	NA	False	NA	NA	False	CATAAA	-17	NA	3438887	3457380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3439334_3442102_3442262_3443924_3444046_3445919_3445994_3446962_3447055_3452485_3452577_3454048_3454187_3454932_3455109_3456917
ENSMUSG00000024906.11_1	chr19	-	1977	16	FSM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	79	11	-12	-3	multi-exon	FALSE	canonical	3	74	junction_15	11.5573930163049	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAAGCAATGCCAAGGT	NA	False	NA	-9	True	AATAAA	-28	NA	5538351	5532870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
ENSMUSG00000024906.11_2	chr19	-	1838	15	NIC	ENSMUSG00000024906.11	novel	2067	16	NA	NA	-11	-1	combination_of_known_junctions	FALSE	canonical	1	7	junction_3	25.7285674625205	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCGGCTGTTAAGGAAGCAA	NA	False	NA	-18	True	AATAAA	-19	NA	5538350	5532879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5533058_5533135_5533220_5533482_5533587_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
ENSMUSG00000024906.11_4	chr19	-	1704	15	ISM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	449	10	-18	-2	3prime_fragment	FALSE	canonical	3	83	junction_4	10.1992896911541	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGCAATGCCAAGGTC	NA	False	NA	-8	True	AATAAA	-29	NA	5537981	5532869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789
ENSMUSG00000024907.8_0	chr19	-	716	6	FSM	ENSMUSG00000024907.8	ENSMUST00000237521.2	788	6	72	0	-25	0	multi-exon	FALSE	canonical	1	1	junction_2	1.72046505340853	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGACTGTTTGGTTCTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	3464472	3459914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_3460166_3461128_3461207_3461557_3461648_3463294_3463350_3464031_3464113_3464311
ENSMUSG00000024908.16_0	chr19	-	4684	22	NIC	ENSMUSG00000024908.16	novel	4952	24	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	106	junction_9	104.600590087781	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTTCCTCGTGAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	3625716	3504932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
ENSMUSG00000024908.16_1	chr19	-	4771	23	NIC	ENSMUSG00000024908.16	novel	4952	24	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	145	junction_22	86.8173369782787	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTTCCTCGTGAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	3625716	3504932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
ENSMUSG00000024908.16_10	chr19	-	4914	24	NIC	ENSMUSG00000024908.16	novel	4952	24	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_22	106.049298376747	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTTCCTCGTGAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	3625716	3504932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576930_3594107_3594256_3625640
ENSMUSG00000024908.16_11	chr19	-	4867	24	NIC	ENSMUSG00000024908.16	novel	4952	24	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_9	100.351876189837	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTTCCTCGTGAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	3625715	3504932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523816_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
ENSMUSG00000024908.16_17	chr19	-	4720	23	NIC	ENSMUSG00000024908.16	novel	4952	24	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_9	114.748638336148	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTTCCTCGTGAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	3625716	3504932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523816_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
ENSMUSG00000024908.16_2	chr19	-	4919	24	FSM	ENSMUSG00000024908.16	ENSMUST00000113997.9	4952	24	33	0	0	0	multi-exon	FALSE	canonical	3	249	junction_9	67.9031613363524	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTTCCTCGTGAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	3625716	3504932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
ENSMUSG00000024908.16_5	chr19	-	4832	23	FSM	ENSMUSG00000024908.16	ENSMUST00000025846.16	4841	23	4	5	0	0	multi-exon	FALSE	canonical	3	106	junction_9	88.0225482945391	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTTCCTCGTGAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	3625716	3504932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
ENSMUSG00000024908.16_7	chr19	-	1375	1	ISM	ENSMUSG00000024908.16	ENSMUST00000025846.16	4841	23	119413	5	14698	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTTCCTCGTGAGCCT	4588	False	NA	NA	False	AATAAA	-19	NA	3506307	3504932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_3504900_3506300
ENSMUSG00000024909.16_0	chr19	+	1976	11	FSM	ENSMUSG00000024909.16	ENSMUST00000166303.9	2634	11	-7	665	-7	-1	multi-exon	FALSE	canonical	2	4	junction_1	23.5805004187782	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCCTGGCTGAGGTGGGTG	NA	False	NA	9	True	AATAAA	-14	NA	5523974	5531880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5524482_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ENSMUSG00000024909.16_1	chr19	+	1835	11	NIC	ENSMUSG00000024909.16	novel	2634	11	NA	NA	-6	-11	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	23.0008695487801	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAAGGAGTCCTGGCT	NA	False	NA	-1	True	AATAAA	-4	NA	5523975	5531870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5524352_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ENSMUSG00000024909.16_2	chr19	+	2557	10	FSM	ENSMUSG00000024909.16	ENSMUST00000070118.14	1781	10	-785	9	-8	-9	multi-exon	FALSE	canonical	3	69	junction_4	6.34209919681348	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGGAGTCCTGGCTGA	NA	False	NA	1	True	AATAAA	-6	NA	5523992	5531872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ENSMUSG00000024909.16_20	chr19	+	1253	8	ISM	ENSMUSG00000024909.16	ENSMUST00000070118.14	1781	10	1355	11	800	-11	3prime_fragment	FALSE	canonical	3	69	junction_2	5.96246764420263	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAAGGAGTCCTGGCT	NA	False	NA	-1	True	AATAAA	-4	NA	5526132	5531870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ENSMUSG00000024909.16_4	chr19	+	1883	11	FSM	ENSMUSG00000024909.16	ENSMUST00000235523.2	2215	11	-335	667	7	-3	multi-exon	FALSE	canonical	1	3	junction_1	23.8706933288499	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCCTGGCTGAGGTGGG	NA	False	NA	7	True	AATAAA	-12	NA	5524007	5531878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5524424_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ENSMUSG00000024909.16_6	chr19	+	1551	11	FSM	ENSMUSG00000024909.16	ENSMUST00000165485.8	1557	11	4	2	4	-2	multi-exon	FALSE	canonical	3	63	junction_1	7.8873316146844	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCCTGGCTGAGGTGGGT	NA	False	NA	8	True	AATAAA	-13	NA	5524719	5531879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ENSMUSG00000024909.16_8	chr19	+	1447	10	NIC	ENSMUSG00000024909.16	novel	1557	11	NA	NA	-16	-9	combination_of_known_junctions	FALSE	canonical	1	3	junction_5	25.2938288477205	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGGAGTCCTGGCTGA	NA	False	NA	1	True	AATAAA	-6	NA	5524699	5531872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ENSMUSG00000024910.6_0	chr19	-	1233	10	FSM	ENSMUSG00000024910.6	ENSMUST00000025844.6	1241	10	8	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_5	1.15470053837925	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGTGGATTCAGCT	NA	False	NA	NA	False	CATAAA	-17	NA	5518527	5515267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5515480_5515557_5515759_5515832_5515898_5516047_5516174_5516258_5516340_5516416_5516514_5516608_5516764_5517050_5517165_5517865_5517951_5518430
ENSMUSG00000024911.8_0	chr19	+	1222	10	FSM	ENSMUSG00000024911.8	ENSMUST00000025847.7	1215	10	-6	-1	-6	0	multi-exon	FALSE	canonical	3	40	junction_5	35.2423706830007	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGGTCCTTGTTCCAG	NA	False	NA	16	True	AATAAA	-16	NA	5510650	5515078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513354_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
ENSMUSG00000024911.8_1	chr19	+	1201	10	FSM	ENSMUSG00000024911.8	ENSMUST00000225141.2	1209	10	7	1	-6	0	multi-exon	FALSE	canonical	3	126	junction_5	12.1837779216647	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGGTCCTTGTTCCAG	NA	False	NA	16	True	AATAAA	-16	NA	5510650	5515078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
ENSMUSG00000024911.8_7	chr19	+	1480	9	NIC	ENSMUSG00000024911.8	novel	1209	10	NA	NA	6	0	intron_retention	FALSE	canonical	3	126	junction_5	11.4455231422596	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGGTCCTTGTTCCAG	NA	False	NA	16	True	AATAAA	-16	NA	5510649	5515078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631_5513741_5513814_5514244_5514361_5514460_5514952
ENSMUSG00000024913.17_0	chr19	-	3143	15	ISM	ENSMUSG00000024913.17	ENSMUST00000025856.17	5161	23	66350	8	-4414	0	3prime_fragment	FALSE	canonical	2	72	junction_10	16.5183880223569	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATACCTGCCATTCCT	NA	False	NA	-8	True	TATAAA	-12	NA	3670206	3634835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615_3641853_3643515_3643627_3647243_3647481_3650672_3650799_3652234_3652445_3654001_3654193_3655285_3655495_3660038_3660239_3662197_3662522_3664225_3664411_3665652_3665880_3670014
ENSMUSG00000024913.17_10	chr19	-	2109	11	ISM	ENSMUSG00000024913.17	ENSMUST00000177294.2	2835	14	5660	0	5660	0	3prime_fragment	TRUE	canonical	2	72	junction_10	14.3819331106774	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATACCTGCCATTCCT	NA	False	NA	-8	True	TATAAA	-12	NA	3660132	3634835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615_3641853_3643515_3643627_3647243_3647481_3650672_3650799_3652234_3652445_3654001_3654193_3655285_3655495_3660038
ENSMUSG00000024913.17_14	chr19	-	4813	22	ISM	ENSMUSG00000024913.17	ENSMUST00000025856.17	5161	23	27054	8	27054	0	3prime_fragment	FALSE	canonical	2	72	junction_10	14.9772313969392	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATACCTGCCATTCCT	NA	False	NA	-8	True	TATAAA	-12	NA	3709502	3634835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615_3641853_3643515_3643627_3647243_3647481_3650672_3650799_3652234_3652445_3654001_3654193_3655285_3655495_3660038_3660239_3662197_3662522_3664225_3664411_3665652_3665880_3670014_3670305_3672509_3672727_3678272_3678445_3680073_3680471_3697527_3697660_3699403_3699601_3702132_3702331_3709243
ENSMUSG00000024913.17_4	chr19	-	5153	23	FSM	ENSMUSG00000024913.17	ENSMUST00000025856.17	5161	23	0	8	0	0	multi-exon	FALSE	canonical	2	72	junction_10	15.3130555220533	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATACCTGCCATTCCT	7827	False	NA	-8	True	TATAAA	-12	NA	3736556	3634835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615_3641853_3643515_3643627_3647243_3647481_3650672_3650799_3652234_3652445_3654001_3654193_3655285_3655495_3660038_3660239_3662197_3662522_3664225_3664411_3665652_3665880_3670014_3670305_3672509_3672727_3678272_3678445_3680073_3680471_3697527_3697660_3699403_3699601_3702132_3702331_3709243_3709641_3736354
ENSMUSG00000024913.17_8	chr19	-	2829	14	ISM	ENSMUSG00000024913.17	ENSMUST00000025856.17	5161	23	70799	8	35	0	3prime_fragment	TRUE	canonical	2	72	junction_10	17.1032368298861	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATACCTGCCATTCCT	NA	False	NA	-8	True	TATAAA	-12	NA	3665757	3634835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615_3641853_3643515_3643627_3647243_3647481_3650672_3650799_3652234_3652445_3654001_3654193_3655285_3655495_3660038_3660239_3662197_3662522_3664225_3664411_3665652
ENSMUSG00000024913.17_9	chr19	-	3875	18	ISM	ENSMUSG00000024913.17	ENSMUST00000025856.17	5161	23	56238	8	-14526	0	3prime_fragment	FALSE	canonical	2	72	junction_10	15.6326780443202	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATACCTGCCATTCCT	6249	False	NA	-8	True	TATAAA	-12	NA	3680318	3634835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615_3641853_3643515_3643627_3647243_3647481_3650672_3650799_3652234_3652445_3654001_3654193_3655285_3655495_3660038_3660239_3662197_3662522_3664225_3664411_3665652_3665880_3670014_3670305_3672509_3672727_3678272_3678445_3680073
ENSMUSG00000024914.17_0	chr19	-	948	7	FSM	ENSMUSG00000024914.17	ENSMUST00000025853.16	992	7	29	15	-29	1	multi-exon	TRUE	canonical	3	999	junction_1	76.7282361469506	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	5474978	5472853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388_5474462_5474700
ENSMUSG00000024914.17_4	chr19	-	827	7	FSM	ENSMUSG00000024914.17	ENSMUST00000113674.8	939	7	113	-1	-21	1	multi-exon	FALSE	canonical	3	65	junction_3	385.460655147405	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	5474836	5472853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5473054_5473358_5473448_5473587_5473703_5473799_5473920_5474209_5474304_5474388_5474462_5474700
ENSMUSG00000024921.18_0	chr19	+	5816	33	FSM	ENSMUSG00000024921.18	ENSMUST00000025862.15	5921	33	57	48	-10	0	multi-exon	FALSE	canonical	2	6	junction_1	7.35245494715881	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGTGGTGTTGGTACT	NA	False	NA	15	True	AATAAA	-16	NA	26582508	26755673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_26582634_26597083_26597345_26601280_26601411_26608069_26608532_26617787_26618050_26624420_26624548_26626383_26626558_26628948_26629123_26631740_26631912_26641450_26641505_26646152_26646284_26646513_26646572_26648483_26648585_26650098_26650247_26654033_26654198_26655715_26655783_26656473_26656585_26659270_26659514_26661208_26661323_26668744_26668853_26669580_26669668_26673575_26673623_26675745_26675913_26683467_26683632_26687857_26688086_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUSG00000024921.18_13	chr19	+	2498	11	ISM	ENSMUSG00000024921.18	ENSMUST00000176769.9	5703	33	93295	2	362	0	3prime_fragment	FALSE	canonical	3	18	junction_1	5.95734840344259	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGTGGTGTTGGTACT	NA	False	NA	15	True	AATAAA	-16	NA	26675744	26755673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_26675913_26683467_26683632_26687857_26688086_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUSG00000024921.18_15	chr19	+	2017	9	NNC	ENSMUSG00000024921.18	novel	876	7	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	7.69740215917033	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGTGGTGTTGGTACT	NA	False	NA	15	True	AATAAA	-16	NA	26693313	26755673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_26693393_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUSG00000024921.18_16	chr19	+	1939	8	ISM	ENSMUSG00000024921.18	ENSMUST00000176769.9	5703	33	111062	4	-3	-2	3prime_fragment	FALSE	canonical	3	26	junction_1	3.44045559394066	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGAATGTGGTGTTGGTA	NA	False	NA	13	True	AATAAA	-14	NA	26693511	26755671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUSG00000024921.18_19	chr19	+	5880	34	FSM	ENSMUSG00000024921.18	ENSMUST00000176030.8	5862	34	-20	2	-20	0	multi-exon	FALSE	canonical	2	6	junction_1	7.73172777101398	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGTGGTGTTGGTACT	NA	False	NA	15	True	AATAAA	-16	NA	26582498	26755673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_26582634_26597083_26597345_26601280_26601411_26608069_26608532_26617787_26618050_26624420_26624548_26626383_26626558_26628948_26629123_26631740_26631912_26641450_26641505_26646152_26646284_26646513_26646572_26648483_26648585_26650098_26650247_26654033_26654198_26655715_26655783_26656473_26656585_26659270_26659514_26661208_26661323_26668744_26668853_26669580_26669668_26673575_26673623_26675745_26675913_26683467_26683632_26687857_26688086_26693514_26693593_26698128_26698348_26729223_26729442_26737277_26737332_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUSG00000024921.18_25	chr19	+	3931	24	ISM	ENSMUSG00000024921.18	ENSMUST00000025862.15	5921	33	58997	49	-7049	-1	3prime_fragment	FALSE	canonical	2	10	junction_1	7.04830752318589	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAATGTGGTGTTGGTAC	NA	False	NA	14	True	AATAAA	-15	NA	26641448	26755672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_26641505_26646152_26646284_26646513_26646572_26648483_26648585_26650098_26650247_26654033_26654198_26655715_26655783_26656473_26656585_26659270_26659514_26661208_26661323_26668744_26668853_26669580_26669668_26673575_26673623_26675745_26675913_26683467_26683632_26687857_26688086_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUSG00000024921.18_7	chr19	+	5997	34	NIC	ENSMUSG00000024921.18	novel	5913	33	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_28	7.35034340758079	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGTGGTGTTGGTACT	NA	False	NA	15	True	AATAAA	-16	NA	26584691	26755673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_26584944_26597083_26597345_26601280_26601411_26608069_26608532_26617787_26618050_26624420_26624548_26626383_26626558_26628948_26629123_26631740_26631912_26641450_26641505_26646152_26646284_26646513_26646572_26648483_26648585_26650098_26650247_26654033_26654198_26655715_26655783_26656473_26656585_26659270_26659514_26661208_26661323_26668744_26668853_26669580_26669668_26673575_26673623_26675745_26675913_26683467_26683632_26687857_26688086_26693514_26693593_26698128_26698348_26729223_26729442_26737277_26737332_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUSG00000024921.18_8	chr19	+	5901	33	NIC	ENSMUSG00000024921.18	novel	5913	33	NA	NA	64	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_10	6.89535339467819	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGTGGTGTTGGTACT	NA	False	NA	15	True	AATAAA	-16	NA	26584733	26755673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_26584944_26597083_26597345_26601280_26601411_26608069_26608532_26617787_26618050_26624420_26624548_26626383_26626558_26628948_26629123_26631740_26631912_26641450_26641505_26646152_26646284_26646513_26646572_26648483_26648585_26650098_26650247_26654033_26654198_26655715_26655783_26656473_26656585_26659270_26659514_26661208_26661323_26668744_26668853_26669580_26669668_26673575_26673623_26675745_26675913_26683467_26683632_26687857_26688086_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUSG00000024924.15_0	chr19	+	3320	19	NIC	ENSMUSG00000024924.15	novel	7971	19	NA	NA	-165	1	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	9.07309140559716	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGGTTTTGATTATTC	NA	False	NA	NA	False	ATTAAA	-12	NA	27194254	27227156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_27194349_27194942_27195097_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
ENSMUSG00000024924.15_13	chr19	+	7342	16	ISM	ENSMUSG00000024924.15	ENSMUST00000172302.8	3855	18	17845	-4359	-3909	-10	3prime_fragment	FALSE	canonical	3	20	junction_2	7.29809716448214	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAACTGTTGCAAAGTCTA	NA	False	NA	3	True	AATAAA	-14	NA	27212264	27231621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
ENSMUSG00000024924.15_18	chr19	+	3375	1	ISM	ENSMUSG00000024924.15	ENSMUST00000167487.8	7971	19	33489	11	12072	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAACTGTTGCAAAGTCT	NA	False	NA	2	True	AATAAA	-13	NA	27228245	27231620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_27228200_27231600
ENSMUSG00000024924.15_3	chr19	+	3175	18	NIC	ENSMUSG00000024924.15	novel	4895	17	NA	NA	-174	1	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	9.17496216863305	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGGTTTTGATTATTC	NA	False	NA	NA	False	ATTAAA	-12	NA	27194245	27227156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_27194349_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
ENSMUSG00000024924.15_7	chr19	+	3833	19	FSM	ENSMUSG00000024924.15	ENSMUST00000167487.8	7971	19	-339	4477	-2	-1	multi-exon	FALSE	canonical	3	7	junction_15	10.2837820299492	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCATGGTTTTGATTAT	NA	False	NA	NA	False	ATTAAA	-10	NA	27194417	27227154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_27195097_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27223992_27224077_27224409_27224491_27225256_27225427_27226504
ENSMUSG00000024924.15_8	chr19	+	3697	18	FSM	ENSMUSG00000024924.15	ENSMUST00000172302.8	3855	18	52	106	52	1	multi-exon	FALSE	canonical	3	20	junction_4	6.92020760934247	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGGTTTTGATTATTC	NA	False	NA	NA	False	ATTAAA	-12	NA	27194471	27227156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_27195097_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
ENSMUSG00000024924.15_9	chr19	+	3340	19	NIC	ENSMUSG00000024924.15	novel	7971	19	NA	NA	-1	1	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	9.38675189355248	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGGTTTTGATTATTC	NA	False	NA	NA	False	ATTAAA	-12	NA	27194418	27227156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_27194533_27194942_27195097_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
ENSMUSG00000024925.12_0	chr19	+	608	4	FSM	ENSMUSG00000024925.12	ENSMUST00000025864.11	1126	4	13	505	-1	0	multi-exon	FALSE	canonical	3	228	junction_3	35.9845645921816	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGAGTCTGTGGGCA	5058	False	NA	4	True	AATAAA	-13	NA	5651913	5652962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5652109_5652220_5652403_5652477_5652598_5652851
ENSMUSG00000024925.12_1	chr19	+	1099	3	NNC	ENSMUSG00000024925.12	novel	771	3	NA	NA	-2	-55	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	155	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAAAGATCCTTTTTTTA	5057	False	NA	NA	False	NA	NA	NA	5651912	5656992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_5652109_5652220_5652420_5656288
ENSMUSG00000024925.12_2	chr19	+	959	2	FSM	ENSMUSG00000024925.12	ENSMUST00000127071.2	869	2	-23	-67	-9	0	multi-exon	FALSE	canonical	3	310	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGAGTCTGTGGGCA	5036	False	NA	4	True	AATAAA	-13	NA	5651891	5652962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5652109_5652220
ENSMUSG00000024925.12_3	chr19	+	850	3	FSM	ENSMUSG00000024925.12	ENSMUST00000155639.2	771	3	-77	-2	11	0	multi-exon	FALSE	canonical	3	241	junction_2	34.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGAGTCTGTGGGCA	5070	False	NA	4	True	AATAAA	-13	NA	5651925	5652962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5652109_5652220_5652403_5652477
ENSMUSG00000024925.12_5	chr19	+	1493	5	NNC	ENSMUSG00000024925.12	novel	1126	4	NA	NA	11	77	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	116.677707810875	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTTCTTTAAATGCCT	5070	False	NA	NA	False	NA	NA	NA	5651925	5657124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_5652109_5652220_5652403_5652477_5652598_5652851_5653024_5656288
ENSMUSG00000024926.11_1	chr19	-	1803	13	FSM	ENSMUSG00000024926.11	ENSMUST00000236229.2	1386	13	-16	-401	-1	0	multi-exon	FALSE	canonical	3	222	junction_9	61.0948147463342	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCAGGAGTTCTTA	3632	False	NA	-6	True	AATAAA	-15	NA	5660073	5653044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879_5659947_5660045
ENSMUSG00000024926.11_2	chr19	-	1959	14	FSM	ENSMUSG00000024926.11	ENSMUST00000113641.4	2154	14	191	4	-2	-1	multi-exon	FALSE	canonical	3	118	junction_10	96.4922046702747	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGCTATCAGGAGTTCTT	3631	False	NA	-7	True	AATAAA	-14	NA	5660074	5653045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879_5659947_5660045
ENSMUSG00000024926.11_4	chr19	-	1900	12	FSM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	5	0	1	0	multi-exon	FALSE	canonical	3	222	junction_9	58.4797768251612	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCAGGAGTTCTTA	3634	False	NA	-6	True	AATAAA	-15	NA	5660071	5653044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
ENSMUSG00000024926.11_8	chr19	-	2054	13	ISM	ENSMUSG00000024926.11	ENSMUST00000113641.4	2154	14	196	3	3	0	intron_retention	FALSE	canonical	3	118	junction_10	98.9692362414817	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCAGGAGTTCTTA	3636	False	NA	-6	True	AATAAA	-15	NA	5660069	5653044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879
ENSMUSG00000024927.9_1	chr19	+	2452	11	FSM	ENSMUSG00000024927.9	ENSMUST00000025867.6	2716	11	263	1	27	-1	multi-exon	FALSE	canonical	3	73	junction_5	8.59069263796581	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAGAGAGTAGCTGTCTT	NA	False	NA	9	True	AATAAA	-15	NA	5687773	5698157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5687870_5688459_5688487_5688578_5688731_5688882_5689032_5689886_5689979_5690330_5690463_5691208_5691314_5691491_5691705_5695352_5695434_5695540_5695616_5696827
ENSMUSG00000024927.9_16	chr19	+	1012	1	ISM	ENSMUSG00000024927.9	ENSMUST00000025867.6	2716	11	9634	2	5971	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCAGAGAGTAGCTGTCT	4281	False	NA	8	True	AATAAA	-14	NA	5697144	5698156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5697100_5698200
ENSMUSG00000024927.9_5	chr19	+	2529	11	NIC	ENSMUSG00000024927.9	novel	786	5	NA	NA	18	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	26.9287949971773	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAGAGTAGCTGTCTTT	NA	False	NA	10	True	AATAAA	-16	NA	5688004	5698158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5688177_5688459_5688487_5688578_5688731_5688882_5689032_5689886_5689979_5690330_5690463_5691208_5691314_5691491_5691705_5695352_5695434_5695540_5695616_5696827
ENSMUSG00000024935.12_0	chr19	+	3729	12	FSM	ENSMUSG00000024935.12	ENSMUST00000025875.5	3800	12	63	8	2	-8	multi-exon	FALSE	canonical	3	74	junction_8	5.75246982529323	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTTATCTTTCTGCCTC	NA	False	NA	9	True	AATAAA	-19	NA	28812536	28891352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_28812733_28856412_28856554_28870234_28870328_28871853_28871969_28873483_28873527_28874906_28875003_28878841_28879027_28880085_28880194_28882011_28882135_28882732_28882928_28886830_28886966_28889053
ENSMUSG00000024937.16_0	chr19	-	2812	18	FSM	ENSMUSG00000024937.16	ENSMUST00000235730.2	2815	18	3	0	-2	0	multi-exon	TRUE	canonical	2	5	junction_10	4.01295480019072	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAACCAGCGCCTGCCCT	NA	False	NA	NA	False	AATAAA	-11	NA	5776300	5758082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5758454_5758583_5758699_5758785_5758860_5760238_5760339_5760601_5760726_5760820_5760877_5760996_5761067_5765823_5766523_5766923_5766973_5767066_5767225_5770713_5770755_5770836_5770906_5771469_5771613_5771694_5771874_5771984_5772039_5772673_5772770_5772977_5773036_5775944
ENSMUSG00000024937.16_1	chr19	-	3157	19	FSM	ENSMUSG00000024937.16	ENSMUST00000236215.2	3160	19	-2	5	-2	0	multi-exon	FALSE	canonical	2	6	junction_10	3.83655259347101	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAACCAGCGCCTGCCCT	NA	False	NA	NA	False	AATAAA	-11	NA	5776300	5758082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5758454_5758583_5758699_5758785_5758860_5760238_5760339_5760601_5760726_5760820_5760877_5760996_5761067_5765823_5766523_5766923_5766973_5767066_5767225_5770212_5770436_5770591_5770755_5770836_5770906_5771469_5771613_5771694_5771874_5771984_5772039_5772673_5772770_5772977_5773036_5775944
ENSMUSG00000024937.16_2	chr19	-	3396	19	NIC	ENSMUSG00000024937.16	novel	6404	19	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	4.54368371790941	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAACCAGCGCCTGCCCT	NA	False	NA	NA	False	AATAAA	-11	NA	5776302	5758082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5758454_5758583_5758699_5758785_5758860_5760238_5760339_5760601_5760726_5760820_5760877_5760996_5761067_5765823_5766523_5766923_5766973_5767066_5767225_5769975_5770436_5770591_5770755_5770836_5770906_5771469_5771613_5771694_5771874_5771984_5772039_5772673_5772770_5772977_5773036_5775944
ENSMUSG00000024937.16_3	chr19	-	5680	19	FSM	ENSMUSG00000024937.16	ENSMUST00000049295.15	6404	19	43	681	1	-2	multi-exon	FALSE	canonical	1	1	junction_10	4.40398248502365	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAAACCAGCGCCTGCC	NA	False	NA	NA	False	AATAAA	-9	NA	5776302	5758084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5758454_5758583_5758699_5758785_5758860_5760238_5760339_5760601_5760726_5760820_5760877_5760996_5761067_5765823_5766523_5766923_5766973_5767066_5767225_5767689_5770436_5770591_5770755_5770836_5770906_5771469_5771613_5771694_5771874_5771984_5772039_5772673_5772770_5772977_5773036_5775944
ENSMUSG00000024939.7_0	chr19	-	1012	1	NIC	ENSMUSG00000024939.7	novel	1189	2	NA	NA	534	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGATTGCCTGGTTAAT	NA	False	NA	-2	True	AATAAA	-16	NA	5779127	5778115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5778100_5779100
ENSMUSG00000024939.7_1	chr19	-	1151	2	FSM	ENSMUSG00000024939.7	ENSMUST00000161368.2	1160	2	5	4	3	-4	multi-exon	FALSE	canonical	3	14	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGTGATTGCCTGGTT	NA	False	NA	-5	True	AATAAA	-13	NA	5779676	5778118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5778858_5779264
ENSMUSG00000024939.7_3	chr19	-	1215	2	FSM	ENSMUSG00000024939.7	ENSMUST00000116558.3	1189	2	-35	9	-15	-9	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTGTATTGTGATTGCC	NA	False	NA	-10	True	AATAAA	-8	NA	5779696	5778123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5778907_5779264
ENSMUSG00000024940.12_0	chr19	+	4029	27	ISM	ENSMUSG00000024940.12	ENSMUST00000081496.6	5190	28	1510	0	-45	0	3prime_fragment	FALSE	canonical	0	0	junction_1	2.52707235245772	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGGTTGGAAGCCCAG	NA	False	NA	NA	False	AATAAA	-21	NA	5792441	5808560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5792591_5795467_5795798_5795945_5796149_5796326_5796433_5796670_5796764_5796928_5797052_5797440_5797600_5797698_5797885_5798602_5798620_5798693_5798767_5798897_5798997_5800976_5801103_5801199_5801332_5801426_5801556_5801781_5801905_5802046_5802170_5803660_5803784_5803956_5804077_5805573_5805703_5805959_5806128_5806274_5806359_5806611_5806741_5806821_5806960_5807338_5807501_5807574_5807656_5807738_5807871_5807968
ENSMUSG00000024940.12_1	chr19	+	3486	25	ISM	ENSMUSG00000024940.12	ENSMUST00000081496.6	5190	28	5071	7	242	-6	3prime_fragment	FALSE	canonical	0	0	junction_2	2.3090251670829	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTCTCCAGTGGTTGGA	NA	False	NA	NA	False	AATAAA	-14	NA	5796002	5808553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5796149_5796326_5796433_5796670_5796764_5796928_5797052_5797440_5797600_5797698_5797885_5798602_5798620_5798693_5798767_5798897_5798997_5800976_5801103_5801199_5801332_5801426_5801556_5801781_5801905_5802046_5802170_5803660_5803784_5803956_5804077_5805573_5805703_5805959_5806128_5806274_5806359_5806611_5806741_5806821_5806960_5807338_5807501_5807574_5807656_5807738_5807871_5807968
ENSMUSG00000024941.10_0	chr19	-	2617	17	FSM	ENSMUSG00000024941.10	ENSMUST00000236773.2	2395	17	11	-233	11	-3	multi-exon	FALSE	canonical	3	43	junction_4	63.7916224417439	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCCTGGGTCCCAGCTCA	9921	False	NA	-14	True	AATAAA	-10	NA	5821415	5808457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809368_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
ENSMUSG00000024941.10_2	chr19	-	2620	17	FSM	ENSMUSG00000024941.10	ENSMUST00000236978.2	2731	17	32	79	11	-3	multi-exon	FALSE	canonical	3	227	junction_12	26.041358331508	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCCTGGGTCCCAGCTCA	9921	False	NA	-14	True	AATAAA	-10	NA	5821415	5808457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
ENSMUSG00000024941.10_4	chr19	-	2570	17	FSM	ENSMUSG00000024941.10	ENSMUST00000025890.10	2586	17	15	1	12	-1	multi-exon	FALSE	canonical	3	22	junction_5	68.5770552007011	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGGGTCCCAGCTCAGT	9922	False	NA	-12	True	AATAAA	-12	NA	5821414	5808455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809782_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
ENSMUSG00000024942.20_1	chr19	-	3022	22	FSM	ENSMUSG00000024942.20	ENSMUST00000164843.10	3122	22	96	4	-12	-4	multi-exon	FALSE	canonical	2	39	junction_21	51.1945734794372	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTACATCTGTCTCTGGGT	1999	False	NA	-11	True	AATAAA	-9	NA	6065831	6038577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065765
ENSMUSG00000024942.20_3	chr19	-	3023	22	FSM	ENSMUSG00000024942.20	ENSMUST00000025891.11	3062	22	34	5	31	-4	multi-exon	TRUE	canonical	2	82	junction_11	40.0795693849892	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTACATCTGTCTCTGGGT	2628	False	NA	-11	True	AATAAA	-9	NA	6065202	6038577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065135
ENSMUSG00000024943.10_1	chr19	-	5242	25	FSM	ENSMUSG00000024943.10	ENSMUST00000087556.7	5683	25	-37	478	-37	-478	multi-exon	FALSE	canonical	2	93	junction_7	95.2415696910872	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGGTTAAAAATATTTTTAA	NA	False	NA	-12	True	AATAAA	-15	NA	23251219	23184292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192008_23192105_23192518_23192564_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
ENSMUSG00000024943.10_2	chr19	-	5207	24	FSM	ENSMUSG00000024943.10	ENSMUST00000223934.2	3448	24	27	-1786	27	-486	multi-exon	FALSE	canonical	2	185	junction_5	71.1727842464471	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCTGACGGTTAAAAAT	NA	False	NA	-20	True	AATAAA	-7	NA	23251234	23184300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
ENSMUSG00000024943.10_3	chr19	-	1684	1	ISM	ENSMUSG00000024943.10	ENSMUST00000087556.7	5683	25	65679	5	6802	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATAGGTTATTTAAGATGA	NA	False	NA	-16	True	AATAAA	-18	NA	23185503	23183819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_23183800_23185500
ENSMUSG00000024943.10_5	chr19	-	5204	24	NIC	ENSMUSG00000024943.10	novel	5683	25	NA	NA	27	-486	combination_of_known_junctions	FALSE	canonical	2	204	junction_5	69.1008413551705	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCTGACGGTTAAAAAT	NA	False	NA	-20	True	AATAAA	-7	NA	23251234	23184300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192008_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
ENSMUSG00000024943.10_6	chr19	-	5252	25	NIC	ENSMUSG00000024943.10	novel	5683	25	NA	NA	27	-486	combination_of_known_junctions	FALSE	canonical	2	93	junction_7	96.5628753139056	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCTGACGGTTAAAAAT	NA	False	NA	-20	True	AATAAA	-7	NA	23251234	23184300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23192518_23192564_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
ENSMUSG00000024944.7_0	chr19	-	870	5	FSM	ENSMUSG00000024944.7	ENSMUST00000025893.7	1286	5	412	4	4	-1	multi-exon	FALSE	canonical	3	648	junction_1	48.4890451545501	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCTGGCTGAGCCATTT	NA	False	NA	-12	True	AATAAA	-14	NA	6191166	6184416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6184832_6186008_6186090_6187507_6187671_6187759_6187871_6191066
ENSMUSG00000024944.7_3	chr19	-	3461	3	NIC	ENSMUSG00000024944.7	novel	2305	4	NA	NA	4	-5	intron_retention	FALSE	canonical	3	728	junction_2	28	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGTTCCTGGCTGAGCC	NA	False	NA	-16	True	AATAAA	-10	NA	6191166	6184420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6187671_6187759_6187871_6191066
ENSMUSG00000024947.18_0	chr19	+	2589	10	FSM	ENSMUSG00000024947.18	ENSMUST00000113502.10	2652	10	63	0	2	0	multi-exon	TRUE	canonical	3	66	junction_1	106.997403914508	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAGAGAGATGTAT	617	False	NA	12	True	GATAAA	-12	NA	6385071	6390910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6385101_6385474_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
ENSMUSG00000024947.18_1	chr19	+	2590	10	FSM	ENSMUSG00000024947.18	ENSMUST00000079327.12	2639	10	40	9	6	0	multi-exon	FALSE	canonical	3	89	junction_1	99.9901229690114	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAGAGAGATGTAT	628	False	NA	12	True	GATAAA	-12	NA	6385082	6390910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6385113_6385474_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
ENSMUSG00000024947.18_4	chr19	+	2947	9	FSM	ENSMUSG00000024947.18	ENSMUST00000056391.15	2975	9	19	9	-6	0	multi-exon	FALSE	canonical	3	360	junction_3	26.9153766460735	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAGAGAGATGTAT	633	False	NA	12	True	GATAAA	-12	NA	6385087	6390910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
ENSMUSG00000024948.16_0	chr19	+	2848	32	FSM	ENSMUSG00000024948.16	ENSMUST00000025897.13	4644	32	49	1747	1	0	multi-exon	FALSE	canonical	3	17	junction_1	5.41455240361839	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCACTAGTCTCTCTGAG	1440	False	NA	10	True	ATTAAA	-14	NA	6391238	6403898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6391376_6391488_6391547_6391773_6391865_6391932_6391998_6392284_6392341_6392639_6392688_6392773_6392817_6393133_6393207_6393284_6393417_6393490_6393554_6393831_6393914_6394001_6394110_6394436_6394516_6394619_6394679_6395348_6395393_6395473_6395513_6395606_6395641_6395757_6395867_6395945_6396035_6396113_6396156_6396238_6396324_6396417_6396498_6396574_6396636_6396721_6396840_6401209_6401269_6401344_6401449_6401526_6401705_6402613_6402683_6402804_6402892_6403149_6403221_6403307_6403364_6403469
ENSMUSG00000024948.16_13	chr19	+	552	3	ISM	ENSMUSG00000024948.16	ENSMUST00000128170.8	1080	9	6432	-30	349	0	3prime_fragment	FALSE	canonical	3	31	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCACTAGTCTCTCTGAG	1458	False	NA	10	True	ATTAAA	-14	NA	6403153	6403898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6403221_6403307_6403364_6403469
ENSMUSG00000024948.16_15	chr19	+	932	1	ISM	ENSMUSG00000024948.16	ENSMUST00000133696.8	5086	29	13546	0	1906	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTACTCTGTTTGTGAG	3015	False	NA	NA	False	NA	NA	NA	6404710	6405642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6404700_6405600
ENSMUSG00000024948.16_17	chr19	+	2926	31	FSM	ENSMUSG00000024948.16	ENSMUST00000123468.9	2875	31	-51	0	8	0	multi-exon	FALSE	canonical	3	17	junction_1	5.4793551932078	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCACTAGTCTCTCTGAG	1430	False	NA	10	True	ATTAAA	-14	NA	6391228	6403898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6391376_6391488_6391547_6391773_6391998_6392284_6392341_6392639_6392688_6392773_6392817_6393133_6393207_6393284_6393417_6393490_6393554_6393831_6393914_6394001_6394110_6394436_6394516_6394619_6394679_6395348_6395393_6395473_6395513_6395606_6395641_6395757_6395867_6395945_6396035_6396113_6396156_6396238_6396324_6396417_6396498_6396574_6396636_6396721_6396840_6401209_6401269_6401344_6401449_6401526_6401705_6402613_6402683_6402804_6402892_6403149_6403221_6403307_6403364_6403469
ENSMUSG00000024948.16_24	chr19	+	3378	15	ISM	ENSMUSG00000024948.16	ENSMUST00000025897.13	4644	32	4569	5	379	-2	3prime_fragment	FALSE	canonical	3	22	junction_3	5.36665821607481	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGAGCTACTCTGTTTGTG	1878	False	NA	NA	False	NA	NA	NA	6395758	6405640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6395867_6395945_6396035_6396113_6396156_6396238_6396324_6396417_6396498_6396574_6396636_6396721_6396840_6401209_6401269_6401344_6401449_6401526_6401705_6402613_6402683_6402804_6402892_6403149_6403221_6403307_6403364_6403469
ENSMUSG00000024949.18_0	chr19	+	3284	13	FSM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	235	834	3	0	multi-exon	FALSE	canonical	3	714	junction_12	157.964724437663	1009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	837	False	NA	15	True	AATAAA	-15	NA	6413954	6427226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687
ENSMUSG00000024949.18_11	chr19	+	2643	13	NIC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	160	junction_10	355.987622678093	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	835	False	NA	15	True	AATAAA	-15	NA	6413952	6427226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424583_6424639_6424748_6424929_6426325
ENSMUSG00000024949.18_2	chr19	+	3273	13	NIC	ENSMUSG00000024949.18	novel	4353	13	NA	NA	9	0	intron_retention	FALSE	canonical	3	160	junction_10	310.864777229943	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	843	False	NA	15	True	AATAAA	-15	NA	6413960	6427226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424583_6424639_6424748_6424929_6425687
ENSMUSG00000024949.18_3	chr19	+	2646	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113487.8	2649	13	3	0	3	0	multi-exon	FALSE	canonical	3	364	junction_12	242.538814190407	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	837	False	NA	15	True	AATAAA	-15	NA	6413954	6427226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
ENSMUSG00000024949.18_5	chr19	+	3283	13	NIC	ENSMUSG00000024949.18	novel	4353	13	NA	NA	8	0	intron_retention	FALSE	canonical	3	98	junction_10	326.079521231657	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	842	False	NA	15	True	AATAAA	-15	NA	6413959	6427226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424318_6424578_6424639_6424748_6424929_6425687
ENSMUSG00000024953.18_0	chr19	-	1222	6	FSM	ENSMUSG00000024953.18	ENSMUST00000025904.12	1262	6	39	1	39	-1	multi-exon	FALSE	canonical	3	493	junction_5	11.3912246927185	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGGTACAGGGTTGTC	NA	False	NA	-10	True	AATAAA	-20	NA	6887435	6884074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6886826
ENSMUSG00000024955.16_0	chr19	-	2226	7	FSM	ENSMUSG00000024955.16	ENSMUST00000025906.12	2241	7	11	4	11	-4	multi-exon	FALSE	canonical	3	79	junction_4	9.26762584963856	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTACACGGTGGTCGGTGA	9696	False	NA	-5	True	AATATA	-12	NA	6899165	6888349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6889379_6889722_6889993_6890083_6890252_6891187_6891317_6891446_6891564_6897430_6897768_6898989
ENSMUSG00000024955.16_1	chr19	-	758	1	ISM	ENSMUSG00000024955.16	ENSMUST00000172975.3	1975	6	9312	5	9312	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTACACGGTGGTCGGTGA	NA	False	NA	-5	True	AATATA	-12	NA	6889107	6888349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_6888300_6889100
ENSMUSG00000024955.16_2	chr19	-	1892	6	ISM	ENSMUSG00000024955.16	ENSMUST00000025906.12	2241	7	1567	4	810	-4	3prime_fragment	FALSE	canonical	3	79	junction_4	8.97997772825746	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTACACGGTGGTCGGTGA	9317	False	NA	-5	True	AATATA	-12	NA	6897609	6888349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_6889379_6889722_6889993_6890083_6890252_6891187_6891317_6891446_6891564_6897430
ENSMUSG00000024955.16_4	chr19	-	1964	6	NIC	ENSMUSG00000024955.16	novel	2274	7	NA	NA	-8	-4	combination_of_known_junctions	FALSE	canonical	2	2	junction_5	37.3876985116763	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTACACGGTGGTCGGTGA	9718	False	NA	-5	True	AATATA	-12	NA	6899143	6888349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6889379_6889722_6889993_6890083_6890252_6891187_6891317_6891446_6891661_6898989
ENSMUSG00000024955.16_5	chr19	-	2320	7	NIC	ENSMUSG00000024955.16	novel	2274	7	NA	NA	17	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	35.8457342882897	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACGGTGGTCGGTGAGTC	9702	False	NA	-2	True	AATATA	-15	NA	6899159	6888346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6889379_6889722_6889993_6890083_6890252_6891187_6891317_6891446_6891661_6897430_6897768_6898989
ENSMUSG00000024957.10_4	chr19	-	1786	7	FSM	ENSMUSG00000024957.10	ENSMUST00000025908.8	1763	7	-25	2	-25	-2	multi-exon	FALSE	canonical	0	0	junction_5	1.25830573921179	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGGTGTGCGAGTGCTT	9911	False	NA	NA	False	AATAAA	-41	NA	6911908	6903031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6903744_6904458_6904599_6904985_6905173_6905361_6905523_6905649_6905777_6910070_6910337_6911715
ENSMUSG00000024958.14_1	chr19	-	2132	7	FSM	ENSMUSG00000024958.14	ENSMUST00000166115.9	1858	7	-287	13	-1	0	multi-exon	FALSE	canonical	3	22	junction_3	2.47767812455308	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTGTCACTCGTCT	6526	False	NA	-12	True	AATAAA	-19	NA	6918848	6915437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917123_6917719_6917770_6917850
ENSMUSG00000024958.14_11	chr19	-	1816	7	NIC	ENSMUSG00000024958.14	novel	1858	7	NA	NA	29	3	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	8.95203266799719	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTCACTCGTCTGTTC	6842	False	NA	-8	True	AATAAA	-23	NA	6918532	6915433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6915898_6916123_6916243_6916379_6916505_6916628_6916779_6916896_6917123_6917719_6917770_6917850
ENSMUSG00000024958.14_2	chr19	-	2213	6	FSM	ENSMUSG00000024958.14	ENSMUST00000238183.2	1255	6	-958	0	-1	0	multi-exon	FALSE	canonical	3	22	junction_3	2.68328157299975	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTGTCACTCGTCT	6526	False	NA	-12	True	AATAAA	-19	NA	6918848	6915437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917123_6917719
ENSMUSG00000024959.15_0	chr19	+	1403	4	FSM	ENSMUSG00000024959.15	ENSMUST00000025910.13	1452	4	43	6	43	0	multi-exon	FALSE	canonical	2	8	junction_1	43.6526695123626	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	8724	False	NA	10	True	AATAAA	-15	NA	6919271	6929261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6919809_6920234_6920415_6928007_6928199_6928766
ENSMUSG00000024959.15_2	chr19	+	912	4	FSM	ENSMUSG00000024959.15	ENSMUST00000113423.10	990	4	78	0	15	0	multi-exon	FALSE	canonical	3	67	junction_1	15.9234278833282	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9399	False	NA	10	True	AATAAA	-15	NA	6919946	6929261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6919993_6920234_6920415_6928007_6928199_6928766
ENSMUSG00000024959.15_3	chr19	+	865	3	FSM	ENSMUSG00000024959.15	ENSMUST00000235240.2	1169	3	302	2	-13	-1	multi-exon	FALSE	canonical	3	98	junction_1	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCGCGCCTCTATCCTT	9686	False	NA	8	True	AATAAA	-13	NA	6920233	6929259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6920415_6928007_6928199_6928766
ENSMUSG00000024959.15_4	chr19	+	606	2	ISM	ENSMUSG00000024959.15	ENSMUST00000235240.2	1169	3	8156	0	-47	0	3prime_fragment	FALSE	canonical	3	103	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	975	False	NA	10	True	AATAAA	-15	NA	6928087	6929261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6928199_6928766
ENSMUSG00000024959.15_5	chr19	+	1262	1	FSM	ENSMUSG00000024959.15	ENSMUST00000237244.2	1107	1	155	-310	-137	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCGCGCCTCTATCCTT	885	False	NA	8	True	AATAAA	-13	NA	6927997	6929259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6928000_6929300
ENSMUSG00000024960.10_2	chr19	-	4226	31	FSM	ENSMUSG00000024960.10	ENSMUST00000025912.10	4257	31	28	3	-26	-2	multi-exon	FALSE	canonical	3	577	junction_24	50.7714377272191	1348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCCTGTGTACAGTGTAG	4339	False	NA	-11	True	AATAAA	-13	NA	6947154	6931083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6932726_6933081_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6946914
ENSMUSG00000024962.14_1	chr19	-	1192	7	FSM	ENSMUSG00000024962.14	ENSMUST00000130048.8	1158	7	-37	3	-15	-3	multi-exon	FALSE	canonical	3	113	junction_2	60.459352736639	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATGGCTGCTTCTGTCAT	4743	False	NA	-4	True	GATAAA	-14	NA	6965034	6959843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6960236_6962728_6962864_6963172_6963209_6963388_6963463_6963657_6963855_6964141_6964185_6964719
ENSMUSG00000024962.14_3	chr19	-	1301	7	FSM	ENSMUSG00000024962.14	ENSMUST00000025914.7	1281	7	-23	3	-23	-3	multi-exon	FALSE	canonical	3	141	junction_2	52.2323867176508	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATGGCTGCTTCTGTCAT	4735	False	NA	-4	True	GATAAA	-14	NA	6965042	6959843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6960236_6962728_6962965_6963172_6963209_6963388_6963463_6963657_6963855_6964141_6964185_6964719
ENSMUSG00000024962.14_5	chr19	-	1152	6	NIC	ENSMUSG00000024962.14	novel	1158	7	NA	NA	-18	-3	combination_of_known_splicesites	FALSE	canonical	3	28	junction_5	103.315826473973	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATGGCTGCTTCTGTCAT	4740	False	NA	-4	True	GATAAA	-14	NA	6965037	6959843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6960236_6962728_6962864_6963172_6963209_6963388_6963463_6963657_6963855_6964719
ENSMUSG00000024962.14_6	chr19	-	1252	6	NIC	ENSMUSG00000024962.14	novel	1281	7	NA	NA	-19	-5	combination_of_known_splicesites	FALSE	canonical	3	28	junction_5	99.8651090221204	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTATGGCTGCTTCTGTC	4739	False	NA	-6	True	GATAAA	-12	NA	6965038	6959845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6960236_6962728_6962965_6963172_6963209_6963388_6963463_6963657_6963855_6964719
ENSMUSG00000024963.13_0	chr19	-	869	7	NNC	ENSMUSG00000024963.13	novel	840	6	NA	NA	-6	-1	at_least_one_novel_splicesite	TRUE	canonical	3	37	junction_3	78.2788817838715	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCGATTCGGTCCTTCA	9939	False	NA	-5	True	AATAAA	-16	NA	6969946	6965279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_6965477_6965556_6965644_6966790_6966953_6967048_6967234_6968085_6968180_6969526_6969641_6969916
ENSMUSG00000024963.13_12	chr19	-	1141	5	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	21	-1	intron_retention	FALSE	canonical	3	188	junction_2	20.6942020865749	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTGTCCGATTCGGTCC	9297	False	NA	-9	True	AATAAA	-12	NA	6969850	6965283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6965477_6965556_6965644_6966790_6967234_6968085_6968180_6969526
ENSMUSG00000024963.13_13	chr19	-	1051	6	FSM	ENSMUSG00000024963.13	ENSMUST00000025915.13	1074	6	20	3	20	1	multi-exon	FALSE	canonical	3	154	junction_3	27.3978101314685	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTCCGATTCGGTCCTT	9296	False	NA	-7	True	AATAAA	-14	NA	6969851	6965281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526
ENSMUSG00000024963.13_19	chr19	-	911	7	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	1	3	junction_6	75.5882486457606	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTGTCCGATTCGGTCC	9945	False	NA	-9	True	AATAAA	-12	NA	6969940	6965283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969690_6969916
ENSMUSG00000024963.13_25	chr19	-	1999	4	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-6	0	intron_retention	FALSE	canonical	3	13	junction_3	98.1370923193106	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9939	False	NA	-4	True	AATAAA	-17	NA	6969946	6965278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6965477_6965556_6967234_6968085_6968180_6969916
ENSMUSG00000024963.13_27	chr19	-	880	5	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	22	-3	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	88.1061149977685	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACGCCTGTCCGATTCGGT	9298	False	NA	-11	True	AATAAA	-10	NA	6969849	6965285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6965477_6965556_6965644_6967048_6967234_6968085_6968180_6969526
ENSMUSG00000024963.13_5	chr19	-	862	7	NNC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_6	60.0194412947449	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTGTCCGATTCGGTCC	9945	False	NA	-9	True	AATAAA	-12	NA	6969940	6965283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969641_6969916
ENSMUSG00000024963.13_8	chr19	-	1045	6	FSM	ENSMUSG00000024963.13	ENSMUST00000179118.2	840	6	-210	5	21	-1	multi-exon	FALSE	canonical	3	37	junction_3	69.5097115516961	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTGTCCGATTCGGTCC	9297	False	NA	-9	True	AATAAA	-12	NA	6969850	6965283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6965477_6965556_6965644_6966790_6966953_6967048_6967234_6968085_6968180_6969526
ENSMUSG00000024965.10_0	chr19	-	1803	11	ISM	ENSMUSG00000024965.10	ENSMUST00000040772.9	2587	15	5285	20	5161	1	3prime_fragment	FALSE	canonical	3	13	junction_3	4.73392015141785	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTTTCTTCTTCCTCCTC	7883	False	NA	-7	True	AATAAA	-18	NA	6991552	6976345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215_6991319_6991427
ENSMUSG00000024965.10_2	chr19	-	2548	15	FSM	ENSMUSG00000024965.10	ENSMUST00000040772.9	2587	15	20	19	-19	2	multi-exon	FALSE	canonical	0	0	junction_12	9.77945576717032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTTCTTCTTCCTCCTCT	5452	False	NA	-6	True	AATAAA	-19	NA	6996817	6976344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215_6991319_6991427_6991597_6991695_6991816_6991984_6992219_6996033_6996208_6996645
ENSMUSG00000024965.10_4	chr19	-	1837	10	ISM	ENSMUSG00000024965.10	ENSMUST00000040772.9	2587	15	5360	20	5236	1	intron_retention	FALSE	canonical	3	13	junction_3	4.57043640026736	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTTTCTTCTTCCTCCTC	7958	False	NA	-7	True	AATAAA	-18	NA	6991477	6976345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215
ENSMUSG00000024965.10_7	chr19	-	1924	12	ISM	ENSMUSG00000024965.10	ENSMUST00000040772.9	2587	15	5064	21	4940	0	3prime_fragment	FALSE	canonical	2	3	junction_11	6.80179849818541	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATCTTTCTTCTTCCTCCT	7662	False	NA	-8	True	AATAAA	-17	NA	6991773	6976346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215_6991319_6991427_6991597_6991695
ENSMUSG00000024965.10_9	chr19	-	2147	13	ISM	ENSMUSG00000024965.10	ENSMUST00000040772.9	2587	15	4672	21	4548	0	3prime_fragment	FALSE	canonical	0	0	junction_12	8.38152730712011	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATCTTTCTTCTTCCTCCT	7270	False	NA	-8	True	AATAAA	-17	NA	6992165	6976346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215_6991319_6991427_6991597_6991695_6991816_6991984
ENSMUSG00000024966.10_2	chr19	-	2092	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	15	1	15	-1	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	4586	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	3778	False	NA	-9	True	AATAAA	-28	NA	7017320	6998070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
ENSMUSG00000024968.15_1	chr19	+	2301	13	NIC	ENSMUSG00000024968.15	novel	2823	12	NA	NA	44	-5	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	300.802676184904	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATGAGTCTTCCATGT	NA	False	NA	16	True	AATAAA	-11	NA	7244733	7252584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_7244790_7246215_7246454_7247129_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
ENSMUSG00000024968.15_3	chr19	+	2807	12	FSM	ENSMUSG00000024968.15	ENSMUST00000066646.12	2823	12	10	6	10	-5	multi-exon	FALSE	canonical	3	1016	junction_11	65.835633045581	2054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATGAGTCTTCCATGT	NA	False	NA	16	True	AATAAA	-11	NA	7245653	7252584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_7246454_7247129_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
ENSMUSG00000024969.16_0	chr19	-	4036	18	NIC	ENSMUSG00000024969.16	novel	3018	18	NA	NA	-15	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	83.0892712064523	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGCTGCCTACTGTTC	3886	False	NA	-4	True	AATAAA	-17	NA	7319199	7252763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
ENSMUSG00000024969.16_1	chr19	-	4448	19	FSM	ENSMUSG00000024969.16	ENSMUST00000171721.8	2660	19	-427	-1361	-15	-2	multi-exon	FALSE	canonical	0	0	junction_4	113.063799863202	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGCTGCCTACTGTTCC	4101	False	NA	-3	True	AATAAA	-18	NA	7318984	7252762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_7254816_7255406_7255452_7257350_7257378_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
ENSMUSG00000024969.16_11	chr19	-	1582	1	ISM	ENSMUSG00000024969.16	ENSMUST00000032557.15	4488	18	64839	3	1114	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGCTGCCTACTGTTC	7089	False	NA	-4	True	AATAAA	-17	NA	7254345	7252763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_7252800_7254300
ENSMUSG00000024969.16_14	chr19	-	4056	19	NIC	ENSMUSG00000024969.16	novel	2660	19	NA	NA	-12	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	110.626498734355	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGAGCTGCTGCCTACT	3889	False	NA	-8	True	AATAAA	-13	NA	7319196	7252767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_7254816_7255406_7255452_7257350_7257378_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
ENSMUSG00000024969.16_2	chr19	-	4217	20	NIC	ENSMUSG00000024969.16	novel	2660	19	NA	NA	-5	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	120.360883937729	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGAGCTGCTGCCTACT	3896	False	NA	-8	True	AATAAA	-13	NA	7319189	7252767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_7254816_7255406_7255452_7256475_7256644_7257350_7257378_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
ENSMUSG00000024969.16_7	chr19	-	4428	18	FSM	ENSMUSG00000024969.16	ENSMUST00000165965.8	2874	18	-194	-1360	15	-3	multi-exon	FALSE	canonical	0	0	junction_3	87.3120720397554	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGCTGCCTACTGTTC	4093	False	NA	-4	True	AATAAA	-17	NA	7318992	7252763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
ENSMUSG00000024970.6_0	chr19	-	184	1	Genic_Genomic	ENSMUSG00000024970.6	novel	NA	NA	NA	NA	20096	20	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATATTAAAAAAAAAAAAA	10003	False	NA	NA	False	NA	NA	NA	7331606	7331422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_-_7331400_7331600
ENSMUSG00000024970.6_1	chr19	-	1919	6	FSM	ENSMUSG00000024970.6	ENSMUST00000025924.4	3152	6	2	1231	2	-8	multi-exon	FALSE	canonical	3	309	junction_2	10.2293694820355	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAAGTTCTGTGTGGG	NA	False	NA	NA	False	AATAAA	-13	NA	7360357	7335058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_7335853_7351021_7351220_7351386_7351513_7351660_7351811_7351885_7352216_7360036
ENSMUSG00000024970.6_3	chr19	-	1994	5	NIC	ENSMUSG00000024970.6	novel	3152	6	NA	NA	2	-8	intron_retention	FALSE	canonical	3	309	junction_2	11.4345966260293	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAAGTTCTGTGTGGG	NA	False	NA	NA	False	AATAAA	-13	NA	7360357	7335058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_7335853_7351021_7351220_7351386_7351513_7351660_7352216_7360036
ENSMUSG00000024972.17_0	chr19	-	2444	10	FSM	ENSMUSG00000024972.17	ENSMUST00000159983.8	2470	10	25	1	10	0	multi-exon	FALSE	canonical	2	3	junction_8	5.03322295684717	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTACTCATATGTTAGTGG	NA	False	NA	NA	False	ATTAAA	-16	NA	7584533	7574025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_7575537_7576124_7576276_7578012_7578102_7578610_7578638_7579407_7579447_7580373_7580494_7581333_7581548_7581668_7581758_7584026_7584189_7584491
ENSMUSG00000024972.17_2	chr19	-	2579	3	ISM	ENSMUSG00000024972.17	ENSMUST00000079902.6	2590	8	5539	-53	5539	0	intron_retention	FALSE	canonical	2	5	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTACTCATATGTTAGTGG	4405	False	NA	NA	False	ATTAAA	-16	NA	7578929	7574025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_7575537_7576124_7576276_7578012
ENSMUSG00000024972.17_3	chr19	-	2476	9	FSM	ENSMUSG00000024972.17	ENSMUST00000099729.10	2757	9	285	-4	210	3	multi-exon	FALSE	canonical	2	3	junction_8	5.3253521010352	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCATATGTTAGTGGTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	7584258	7574021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_7575537_7576124_7576276_7578012_7578102_7578610_7578638_7579407_7579447_7580373_7580494_7581333_7581548_7581668_7581758_7584026
ENSMUSG00000024972.17_4	chr19	-	2349	9	NIC	ENSMUSG00000024972.17	novel	2470	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	5.1234753829798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTACTCATATGTTAGTGG	NA	False	NA	NA	False	ATTAAA	-16	NA	7584558	7574025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_7575537_7576124_7576276_7578012_7578102_7578610_7578638_7579407_7579447_7581333_7581548_7581668_7581758_7584026_7584189_7584491
ENSMUSG00000024974.11_0	chr19	+	4151	29	FSM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	13	687	13	338	multi-exon	FALSE	non_canonical	3	891	junction_13	92.0610586535271	1934	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGAAAGTGTTGCTTTCA	NA	False	NA	70	True	ATTAAA	-13	NA	53588841	53633577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281_53616386_53616483_53616584_53617097_53617259_53617674_53617817_53619917_53620069_53622389_53622543_53624101_53624254_53624811_53624971_53627128_53627237_53627757_53627867_53629192_53629441_53629528_53629742_53629955_53630148_53630291_53630470_53632274_53632382_53633137
ENSMUSG00000024975.14_0	chr19	+	2305	12	FSM	ENSMUSG00000024975.14	ENSMUST00000025931.14	2381	12	67	9	-9	0	multi-exon	FALSE	canonical	3	114	junction_5	6.73954654285478	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTTTAGTGGGAGTGCA	535	False	NA	13	True	AATAAA	-18	NA	53891796	53918282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_53891920_53895879_53895987_53897542_53897846_53899358_53899454_53901242_53901357_53908045_53908268_53909648_53909747_53910447_53910563_53914636_53914745_53914965_53915077_53915624_53915765_53917513
ENSMUSG00000024975.14_9	chr19	+	1329	6	ISM	ENSMUSG00000024975.14	ENSMUST00000165617.3	1733	13	17814	2	17814	0	intron_retention	FALSE	canonical	3	115	junction_1	6.88767014308903	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTTTAGTGGGAGTGCA	2289	False	NA	13	True	AATAAA	-18	NA	53909660	53918282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_53909747_53910447_53910563_53914636_53914745_53914965_53915077_53915624_53915765_53917513
ENSMUSG00000024976.15_1	chr19	+	3946	9	FSM	ENSMUSG00000024976.15	ENSMUST00000169861.9	3664	9	-40	-242	-40	-22	multi-exon	FALSE	canonical	3	14	junction_1	127.929668177479	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATTTATTACAGTTCTAC	3318	False	NA	-1	True	TATAAA	-2	NA	53932696	54021540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_53932834_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ENSMUSG00000024976.15_14	chr19	+	3953	9	FSM	ENSMUSG00000024976.15	ENSMUST00000025932.9	3965	9	7	5	2	-5	multi-exon	FALSE	canonical	3	29	junction_1	123.021784148174	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTAGAGCTTGTGTGTGT	3939	False	NA	16	True	TATAAA	-19	NA	53933317	54021557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_53933445_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ENSMUSG00000024976.15_19	chr19	+	3828	8	ISM	ENSMUSG00000024976.15	ENSMUST00000025932.9	3965	9	42572	5	-513	-5	3prime_fragment	FALSE	canonical	3	368	junction_1	19.5333310115854	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTAGAGCTTGTGTGTGT	NA	False	NA	16	True	TATAAA	-19	NA	53975882	54021557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ENSMUSG00000024976.15_4	chr19	+	3863	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	-14	-5	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	403	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTAGAGCTTGTGTGTGT	3911	False	NA	16	True	TATAAA	-19	NA	53933289	54021557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ENSMUSG00000024978.12_0	chr19	-	5917	21	FSM	ENSMUSG00000024978.12	ENSMUST00000061856.6	3832	21	-8	-2077	-8	-21	multi-exon	FALSE	canonical	3	55	junction_4	9.97045635866283	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACCAGAAAAAAAAAACCC	8995	False	NA	-21	True	NA	NA	NA	55087891	55056088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_55059479_55061143_55061203_55063002_55063193_55063973_55064112_55064722_55064801_55066257_55066401_55066754_55067020_55067647_55067719_55068815_55068932_55069823_55069910_55070033_55070148_55071632_55071846_55072129_55072230_55075816_55075954_55076542_55076640_55077229_55077377_55079567_55079682_55082350_55082425_55084552_55084676_55085928_55086060_55087760
ENSMUSG00000024978.12_4	chr19	-	2615	1	NIC	ENSMUSG00000024978.12	novel	3304	23	NA	NA	29185	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAAAACCCGACTG	NA	False	NA	-16	True	AATAAA	-3	NA	55058698	55056083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_55056100_55058700
ENSMUSG00000024981.7_2	chr19	+	2601	22	FSM	ENSMUSG00000024981.7	ENSMUST00000043150.6	4243	22	546	1096	546	946	multi-exon	TRUE	canonical	3	56	junction_1	11.2473730871055	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGTTGTGCCTGCAGTC	NA	False	NA	NA	False	AATAAA	-12	NA	55242346	55285056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_55242599_55257075_55257261_55261200_55261310_55266338_55266404_55266512_55266615_55267895_55267996_55268872_55269052_55269767_55269801_55269881_55269934_55270904_55270979_55271739_55271818_55272834_55272970_55276259_55276395_55277236_55277333_55279577_55279651_55279849_55279939_55280204_55280322_55282018_55282163_55282633_55282736_55283264_55283337_55283804_55283955_55284797
ENSMUSG00000024981.7_7	chr19	+	2349	21	ISM	ENSMUSG00000024981.7	ENSMUST00000043150.6	4243	22	15271	1100	-4230	942	3prime_fragment	FALSE	canonical	3	63	junction_3	10.3483090406114	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATATTATGTTGTGCCTGC	3085	False	NA	NA	False	AATAAA	-8	NA	55257071	55285052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_55257261_55261200_55261310_55266338_55266404_55266512_55266615_55267895_55267996_55268872_55269052_55269767_55269801_55269881_55269934_55270904_55270979_55271739_55271818_55272834_55272970_55276259_55276395_55277236_55277333_55279577_55279651_55279849_55279939_55280204_55280322_55282018_55282163_55282633_55282736_55283264_55283337_55283804_55283955_55284797
ENSMUSG00000024982.11_3	chr19	-	2140	11	FSM	ENSMUSG00000024982.11	ENSMUST00000224897.2	2168	11	9	19	3	0	multi-exon	FALSE	canonical	3	431	junction_6	59.8815497461447	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTATAGTTTTCACCA	7448	False	NA	-26	True	AATAAA	-19	NA	55304455	55286751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
ENSMUSG00000024982.11_6	chr19	-	2249	11	FSM	ENSMUSG00000024982.11	ENSMUST00000076891.7	2263	11	14	0	-6	0	multi-exon	FALSE	canonical	3	26	junction_10	157.939355450122	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTATAGTTTTCACCA	7455	False	NA	-26	True	AATAAA	-19	NA	55304448	55286751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304111
ENSMUSG00000024983.11_0	chr19	+	2627	8	NNC	ENSMUSG00000024983.11	novel	3405	8	NA	NA	-4	-817	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_7	37.8940520883353	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCAACCTCAGTCTGCC	NA	False	NA	NA	False	ATTAAA	-7	NA	55304754	55614176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487748_55612248
ENSMUSG00000024983.11_12	chr19	+	2420	1	ISM	ENSMUSG00000024983.11	ENSMUST00000223690.2	4175	9	308536	4	243872	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATGATTTGTTTATCGCT	NA	False	NA	10	True	ATTAAA	-14	NA	55613317	55615737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_55613300_55615700
ENSMUSG00000024983.11_2	chr19	+	3402	8	FSM	ENSMUSG00000024983.11	ENSMUST00000095950.3	3405	8	-39	42	-15	-42	multi-exon	FALSE	canonical	3	70	junction_7	16.8219972606327	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCCAGAATCAAAAGCAATT	NA	False	NA	3	True	AATAAA	-16	NA	55304743	55614951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55612248
ENSMUSG00000024983.11_3	chr19	+	2793	6	NIC	ENSMUSG00000024983.11	novel	1244	8	NA	NA	5	1413	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	45.5042855124657	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATTTGTGAACTCAGAAC	NA	False	NA	NA	False	AATAAA	-20	NA	55304731	55436824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55434609
ENSMUSG00000024985.21_11	chr19	+	3538	12	NIC	ENSMUSG00000024985.21	novel	2135	14	NA	NA	249	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_11	27.6605755185341	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAAGGCTGGCCGCTTGC	NA	False	NA	16	True	AATAAA	-17	NA	55731022	55922085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55914408_55914482_55919865
ENSMUSG00000024985.21_12	chr19	+	3089	12	NIC	ENSMUSG00000024985.21	novel	2318	15	NA	NA	-234	-5	combination_of_known_splicesites	FALSE	canonical	3	18	junction_10	23.2787634217602	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATGAAAAAGAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	55731042	55921656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55915115_55915189_55919865
ENSMUSG00000024985.21_14	chr19	+	3034	11	NIC	ENSMUSG00000024985.21	novel	3715	14	NA	NA	244	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	22.9235686576065	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55731017	55921661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899102_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55919865
ENSMUSG00000024985.21_18	chr19	+	3340	10	ISM	ENSMUSG00000024985.21	ENSMUST00000041717.14	3590	12	1125	-400	100	-2	3prime_fragment	FALSE	canonical	3	39	junction_9	14.3947864361792	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAAAGGCTGGCCGCTTG	NA	False	NA	15	True	AATAAA	-16	NA	55731376	55922084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55919865
ENSMUSG00000024985.21_2	chr19	+	3978	12	FSM	ENSMUSG00000024985.21	ENSMUST00000041717.14	3590	12	12	-400	12	-2	multi-exon	FALSE	canonical	3	39	junction_11	15.7312133791442	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAAAGGCTGGCCGCTTG	NA	False	NA	15	True	AATAAA	-16	NA	55730263	55922084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55919865
ENSMUSG00000024985.21_23	chr19	+	1308	1	ISM	ENSMUSG00000024985.21	ENSMUST00000111662.11	3715	14	190097	5	33608	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATGAAAAAGAAAAAAAGA	838	False	NA	NA	False	NA	NA	NA	55920348	55921656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_55920300_55921700
ENSMUSG00000024985.21_29	chr19	+	3747	15	NIC	ENSMUSG00000024985.21	novel	3629	15	NA	NA	12	-5	combination_of_known_junctions	FALSE	canonical	2	10	junction_13	28.0025509042097	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATGAAAAAGAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	55730263	55921656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55912961_55913013_55914408_55914482_55915115_55915189_55919865
ENSMUSG00000024985.21_3	chr19	+	4046	13	NIC	ENSMUSG00000024985.21	novel	2318	15	NA	NA	19	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_11	22.7173147376377	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAAGGCTGGCCGCTTGCT	NA	False	NA	17	True	AATAAA	-18	NA	55730270	55922086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55915115_55915189_55919865
ENSMUSG00000024985.21_34	chr19	+	3612	13	NIC	ENSMUSG00000024985.21	novel	2318	15	NA	NA	247	-2	combination_of_known_junctions	FALSE	canonical	3	10	junction_11	27.9135570407404	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAAAGGCTGGCCGCTTG	NA	False	NA	15	True	AATAAA	-16	NA	55731020	55922084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55914408_55914482_55915115_55915189_55919865
ENSMUSG00000024985.21_35	chr19	+	3463	11	ISM	ENSMUSG00000024985.21	ENSMUST00000041717.14	3590	12	766	-394	244	-8	3prime_fragment	FALSE	canonical	3	39	junction_10	16.2098735343617	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGCAGAAAGGCTGGC	NA	False	NA	9	True	AATAAA	-10	NA	55731017	55922078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55919865
ENSMUSG00000024985.21_4	chr19	+	3623	13	NIC	ENSMUSG00000024985.21	novel	3715	14	NA	NA	12	-5	combination_of_known_junctions	FALSE	canonical	3	9	junction_12	26.9602330603181	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATGAAAAAGAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	55730263	55921656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55914408_55914482_55919865
ENSMUSG00000024985.21_46	chr19	+	4148	14	NIC	ENSMUSG00000024985.21	novel	2318	15	NA	NA	-12	-2	combination_of_known_junctions	FALSE	canonical	3	10	junction_12	27.3960650221565	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAAAGGCTGGCCGCTTG	NA	False	NA	15	True	AATAAA	-16	NA	55730239	55922084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55914408_55914482_55915115_55915189_55919865
ENSMUSG00000024985.21_5	chr19	+	4031	13	FSM	ENSMUSG00000024985.21	ENSMUST00000061496.17	3193	13	-437	-401	12	0	multi-exon	FALSE	canonical	2	5	junction_12	25.9758167447254	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAAGGCTGGCCGCTTGCT	NA	False	NA	17	True	AATAAA	-18	NA	55730263	55922086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55912961_55913013_55919865
ENSMUSG00000024985.21_6	chr19	+	3959	12	NIC	ENSMUSG00000024985.21	novel	3590	12	NA	NA	19	-2	combination_of_known_junctions	FALSE	canonical	3	21	junction_6	22.2725417431976	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAAAGGCTGGCCGCTTG	NA	False	NA	15	True	AATAAA	-16	NA	55730270	55922084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899102_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55919865
ENSMUSG00000024986.13_0	chr19	+	3939	3	NIC	ENSMUSG00000024986.13	novel	1435	4	NA	NA	-241	0	intron_retention	FALSE	canonical	3	37	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACCCTGTTTGAATTCTCA	NA	False	NA	20	True	AATGAA	-33	NA	37423016	37429120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_37425816_37426014_37426066_37428031
ENSMUSG00000024986.13_1	chr19	+	1710	4	FSM	ENSMUSG00000024986.13	ENSMUST00000025944.9	1802	4	31	61	31	-2	multi-exon	FALSE	canonical	3	34	junction_1	4.18993502999218	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGACCCTGTTTGAATTCT	NA	False	NA	18	True	AATGAA	-31	NA	37423288	37429118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_37423682_37425636_37425816_37426014_37426066_37428031
ENSMUSG00000024986.13_3	chr19	+	3707	3	ISM	ENSMUSG00000024986.13	ENSMUST00000025944.9	1802	4	-5	66	-5	-7	intron_retention	FALSE	canonical	3	34	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGAACGACCCTGTTTGA	NA	False	NA	13	True	AATGAA	-26	NA	37423252	37429113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_37423682_37425636_37425816_37426014
ENSMUSG00000024986.13_4	chr19	+	931	1	ISM	ENSMUSG00000024986.13	ENSMUST00000025944.9	1802	4	4927	64	2998	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACGACCCTGTTTGAAT	NA	False	NA	15	True	AATGAA	-28	NA	37428184	37429115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_37428200_37429100
ENSMUSG00000024989.16_1	chr19	+	2533	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-8	-1	combination_of_known_junctions	FALSE	canonical	3	96	junction_2	88.367917758024	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGTGTCTAGTATGTG	NA	False	NA	NA	False	AATAAA	-15	NA	38043476	38062868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_38043530_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_2	chr19	+	2424	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	90.951078967938	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043472	38062869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_38043530_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_22	chr19	+	2616	10	NNC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-19	1	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	109.160432391962	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTCTAGTATGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	38043517	38062870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_38043766_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_25	chr19	+	2641	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-19	-2	combination_of_known_junctions	FALSE	canonical	3	35	junction_2	120.180419924933	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACTGTGTCTAGTATGT	NA	False	NA	NA	False	AATAAA	-14	NA	38043517	38062867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_38043766_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_32	chr19	+	2704	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	103.855669079738	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGTGTCTAGTATGTG	NA	False	NA	NA	False	AATAAA	-15	NA	38043517	38062868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_38043766_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_36	chr19	+	2726	10	FSM	ENSMUSG00000024989.16	ENSMUST00000169673.3	2757	10	28	3	-19	-3	multi-exon	FALSE	canonical	3	91	junction_1	107.147988119351	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTACTGTGTCTAGTATG	NA	False	NA	NA	False	AATAAA	-13	NA	38043517	38062866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_38043766_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_38	chr19	+	2705	8	ISM	ENSMUSG00000024989.16	ENSMUST00000096096.12	2366	9	2367	1	2318	-1	3prime_fragment	FALSE	canonical	3	299	junction_1	30.684703361906	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGTGTCTAGTATGTG	NA	False	NA	NA	False	AATAAA	-15	NA	38045854	38062868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_4	chr19	+	2510	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_2	84.0640555296898	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043476	38062869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_38043530_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_5	chr19	+	2448	10	FSM	ENSMUSG00000024989.16	ENSMUST00000236044.2	2442	10	-8	2	-8	0	multi-exon	FALSE	canonical	3	35	junction_2	104.602716958317	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043476	38062869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_38043530_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_52	chr19	+	2459	9	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	2318	-1	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	81.2564420523075	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGTGTCTAGTATGTG	NA	False	NA	NA	False	AATAAA	-15	NA	38045854	38062868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUSG00000024989.16_72	chr19	+	897	1	ISM	ENSMUSG00000024989.16	ENSMUST00000236044.2	2442	10	18487	3	18435	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGTGTCTAGTATGTG	6905	False	NA	NA	False	AATAAA	-15	NA	38061971	38062868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_38062000_38062900
ENSMUSG00000024990.14_0	chr19	-	916	6	FSM	ENSMUSG00000024990.14	ENSMUST00000112335.4	937	6	21	0	21	0	multi-exon	FALSE	canonical	3	6	junction_5	4.31740662898458	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTCCTATGAGTTGAAGA	5230	False	NA	-5	True	ATTAAA	-13	NA	38113255	38105077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_38105358_38106719_38106933_38112476_38112584_38112743_38112881_38112966_38113096_38113205
ENSMUSG00000024991.9_0	chr19	-	5126	22	FSM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-7	6	-7	-6	multi-exon	FALSE	canonical	0	0	junction_17	309.066534016512	2250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGGTGTTAGTGTTTTGT	8747	False	NA	-37	True	AATAAA	-11	NA	60779088	60749560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
ENSMUSG00000024991.9_21	chr19	-	3179	11	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	17789	6	-703	-6	3prime_fragment	FALSE	canonical	3	964	junction_7	191.949889294055	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGGTGTTAGTGTTTTGT	9761	False	NA	-37	True	AATAAA	-11	NA	60761292	60749560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129
ENSMUSG00000024991.9_3	chr19	-	1936	4	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	23962	2	5470	-2	3prime_fragment	FALSE	canonical	3	1353	junction_3	61.4292727903852	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGTGTTTTGTCAAT	9081	False	NA	-33	True	AATAAA	-15	NA	60755119	60749556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771
ENSMUSG00000024993.16_0	chr19	+	2316	9	FSM	ENSMUSG00000024993.16	ENSMUST00000025957.9	2307	9	-11	2	4	-2	multi-exon	FALSE	canonical	3	273	junction_1	50.1458809375207	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAGAACTACTTGATG	NA	False	NA	NA	False	ATTAAA	-11	NA	60800037	60824663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ENSMUSG00000024993.16_1	chr19	+	2333	9	NIC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	88.7623230881211	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800042	60824665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_60800112_60803029_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ENSMUSG00000024993.16_2	chr19	+	2252	8	FSM	ENSMUSG00000024993.16	ENSMUST00000119633.8	2267	8	14	1	-6	-1	multi-exon	FALSE	canonical	3	56	junction_2	141.985771060601	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAGAACTACTTGATGT	NA	False	NA	NA	False	ATTAAA	-12	NA	60800042	60824664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_60800112_60803029_60803247_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ENSMUSG00000024997.8_1	chr19	-	1408	7	FSM	ENSMUSG00000024997.8	ENSMUST00000025961.7	1478	7	31	39	31	-39	multi-exon	FALSE	canonical	3	658	junction_4	52.5148127251308	533	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAACATTAAAA	1478	False	NA	-40	True	NA	NA	NA	60862963	60852527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60859857_60860000_60861565_60861702_60862869
ENSMUSG00000024998.18_1	chr19	+	7964	33	FSM	ENSMUSG00000024998.18	ENSMUST00000182481.8	8357	33	-82	475	-70	160	multi-exon	FALSE	canonical	1	8	junction_11	5.14743564797074	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTACATTGGAACCTCA	NA	False	NA	-3	True	NA	NA	NA	38469486	38771399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_38469805_38512358_38513897_38608886_38609176_38640238_38640556_38686893_38687040_38690263_38690523_38693683_38693890_38705007_38705684_38707999_38708183_38709417_38709536_38710255_38710365_38713144_38713268_38713353_38713491_38715211_38715451_38717126_38717189_38717270_38717437_38724874_38724983_38726366_38726484_38727691_38727851_38734209_38734340_38737735_38737858_38738884_38739003_38747258_38747391_38748422_38748711_38753743_38753908_38755575_38755838_38757894_38758014_38758790_38758920_38761263_38761474_38766300_38766460_38768209_38768429_38769003_38769227_38770980
ENSMUSG00000024998.18_17	chr19	+	5884	25	ISM	ENSMUSG00000024998.18	ENSMUST00000169713.9	9439	32	195367	398	-2806	-398	3prime_fragment	FALSE	canonical	1	8	junction_3	4.82596420993314	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAATAATAAATGAAA	NA	False	NA	NA	False	NA	NA	NA	38708007	38773076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_38708183_38709417_38709536_38710255_38710365_38713144_38713268_38713353_38713491_38715211_38715451_38717126_38717189_38717270_38717437_38724874_38724983_38726366_38726484_38727691_38727851_38734209_38734340_38737735_38737858_38738884_38739003_38747258_38747391_38748422_38748711_38753743_38753908_38755575_38755838_38757894_38758014_38758790_38758920_38761263_38761474_38766300_38766460_38768209_38768429_38769003_38769227_38770980
ENSMUSG00000024998.18_23	chr19	+	2281	11	ISM	ENSMUSG00000024998.18	ENSMUST00000182589.8	6769	22	36492	629	23948	164	3prime_fragment	FALSE	canonical	3	15	junction_1	4.43734154646676	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACATTGGAACCTCAGAGA	NA	False	NA	1	True	NA	NA	NA	38747305	38771403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_38747391_38748422_38748711_38753743_38753908_38755575_38755838_38757894_38758014_38758790_38758920_38761263_38761474_38766300_38766460_38768209_38768429_38769003_38769227_38770980
ENSMUSG00000024998.18_39	chr19	+	5012	27	ISM	ENSMUSG00000024998.18	ENSMUST00000169713.9	9439	32	181128	2075	-17045	160	3prime_fragment	FALSE	canonical	1	8	junction_5	4.96854008060158	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTACATTGGAACCTCA	NA	False	NA	-3	True	NA	NA	NA	38693768	38771399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_38693890_38705007_38705684_38707999_38708183_38709417_38709536_38710255_38710365_38713144_38713268_38713353_38713491_38715211_38715451_38717126_38717189_38717270_38717437_38724874_38724983_38726366_38726484_38727691_38727851_38734209_38734340_38737735_38737858_38738884_38739003_38747258_38747391_38748422_38748711_38753743_38753908_38755575_38755838_38757894_38758014_38758790_38758920_38761263_38761474_38766300_38766460_38768209_38768429_38769003_38769227_38770980
ENSMUSG00000024998.18_5	chr19	+	7694	32	FSM	ENSMUSG00000024998.18	ENSMUST00000169713.9	9439	32	331	1414	319	28	multi-exon	FALSE	canonical	1	8	junction_10	4.96145391734978	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGGTAGAGATGCAGAGCC	NA	False	NA	NA	False	AATAAA	-18	NA	38512971	38772060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_38513897_38608886_38609176_38640238_38640556_38686893_38687040_38690263_38690523_38693683_38693890_38705007_38705684_38707999_38708183_38709417_38709536_38710255_38710365_38713144_38713268_38713353_38713491_38715211_38715451_38717126_38717189_38717270_38717437_38724874_38724983_38726366_38726484_38727691_38727851_38734209_38734340_38737735_38737858_38738884_38739003_38747258_38747391_38748422_38748711_38753743_38753908_38755575_38755838_38757894_38758014_38758790_38758920_38761263_38761474_38766300_38766460_38768209_38768429_38769003_38769227_38770980
ENSMUSG00000024998.18_9	chr19	+	2502	5	ISM	ENSMUSG00000024998.18	ENSMUST00000182267.2	7234	33	276	80194	276	-48522	5prime_fragment	FALSE	canonical	3	15	junction_3	5.21416340365355	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGTTAGGGAGATTTT	NA	False	NA	NA	False	AATAAA	-10	NA	38512928	38691045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_38513897_38608886_38609176_38640238_38640556_38686893_38687040_38690263
ENSMUSG00000024999.8_0	chr19	-	2941	21	FSM	ENSMUSG00000024999.8	ENSMUST00000025963.8	3977	21	31	1005	31	-1005	multi-exon	FALSE	canonical	3	233	junction_1	18.6711006638602	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTCATGGTTTTTTTTT	2319	False	NA	-7	True	AATAAA	-22	NA	38807650	38777576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_38778142_38778731_38778817_38781144_38781243_38782548_38782678_38783415_38783598_38783929_38784002_38784081_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
ENSMUSG00000024999.8_4	chr19	-	3828	22	NNC	ENSMUSG00000024999.8	novel	3977	21	NA	NA	31	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	60.4590526898511	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTAGTCTTACGAGGT	2319	False	NA	NA	False	AATAAA	-16	NA	38807650	38776572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_38776582_38776698_38778142_38778731_38778817_38781144_38781243_38782548_38782678_38783415_38783598_38783929_38784002_38784081_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
ENSMUSG00000025001.12_3	chr19	+	3044	22	FSM	ENSMUSG00000025001.12	ENSMUST00000025965.12	5868	22	46	2778	46	-2778	multi-exon	TRUE	canonical	3	1554	junction_5	143.18806117019	3092	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGATCTGGTCACATTA	NA	False	NA	10	True	AATAAA	-11	NA	38919404	38956717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
ENSMUSG00000025006.19_0	chr19	-	5285	23	NIC	ENSMUSG00000025006.19	novel	2688	24	NA	NA	-13	2712	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	16.9725105892581	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTGTGTTCTCTTCCTT	9875	False	NA	-2	True	AATAAA	-22	NA	40502208	40280484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ENSMUSG00000025006.19_1	chr19	-	5253	22	NIC	ENSMUSG00000025006.19	novel	2688	24	NA	NA	-12	2711	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	18.3974759187614	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTCTGTGTTCTCTTCCT	9876	False	NA	-3	True	AATAAA	-21	NA	40502207	40280485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ENSMUSG00000025006.19_11	chr19	-	5601	23	NIC	ENSMUSG00000025006.19	novel	3589	29	NA	NA	-3	2707	intron_retention	FALSE	canonical	3	22	junction_3	19.7447032336554	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCACCTCTGTGTTCTCT	9896	False	NA	-7	True	AATAAA	-17	NA	40502187	40280489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40361919_40362062_40365088_40365461_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ENSMUSG00000025006.19_14	chr19	-	5307	23	NIC	ENSMUSG00000025006.19	novel	2688	24	NA	NA	-7	2710	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	20.7997139204739	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTCTGTGTTCTCTTCC	9881	False	NA	-4	True	AATAAA	-20	NA	40502202	40280486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40288686_40288747_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ENSMUSG00000025006.19_16	chr19	-	3594	6	ISM	ENSMUSG00000025006.19	ENSMUST00000099466.10	2223	22	87624	-3006	-2895	2710	3prime_fragment	FALSE	canonical	3	22	junction_3	14.7864803114196	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTCTGTGTTCTCTTCC	2346	False	NA	-4	True	AATAAA	-20	NA	40303087	40280486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060
ENSMUSG00000025006.19_18	chr19	-	5711	25	NIC	ENSMUSG00000025006.19	novel	3589	29	NA	NA	-11	2708	intron_retention	FALSE	canonical	3	14	junction_4	20.5040223018693	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCACCTCTGTGTTCTCTT	9877	False	NA	-6	True	AATAAA	-18	NA	40502206	40280488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40288686_40288747_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40365088_40365461_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ENSMUSG00000025006.19_21	chr19	-	2980	24	NIC	ENSMUSG00000025006.19	novel	3589	29	NA	NA	-11	7	intron_retention	FALSE	canonical	3	14	junction_4	21.6767801513871	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTACCCACTCCCATT	9877	False	NA	NA	False	NA	NA	NA	40502206	40283189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40288686_40288747_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40361919_40362062_40365088_40365461_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ENSMUSG00000025006.19_3	chr19	-	5644	24	NIC	ENSMUSG00000025006.19	novel	3589	29	NA	NA	-11	2701	intron_retention	FALSE	canonical	3	22	junction_3	18.4479034520711	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCGTGGCACCTCTGTG	9877	False	NA	-13	True	AATAAA	-11	NA	40502206	40280495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40365088_40365461_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ENSMUSG00000025006.19_35	chr19	-	5443	24	NIC	ENSMUSG00000025006.19	novel	2582	24	NA	NA	-11	2710	combination_of_known_junctions	FALSE	canonical	2	5	junction_17	22.0621222930981	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTCTGTGTTCTCTTCC	9877	False	NA	-4	True	AATAAA	-20	NA	40502206	40280486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40361919_40362062_40365088_40365248_40365427_40365461_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ENSMUSG00000025006.19_6	chr19	-	5339	24	NIC	ENSMUSG00000025006.19	novel	2688	24	NA	NA	-7	2712	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	19.5313716914923	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTGTGTTCTCTTCCTT	9881	False	NA	-2	True	AATAAA	-22	NA	40502202	40280484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40288686_40288747_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ENSMUSG00000025006.19_7	chr19	-	5444	24	NIC	ENSMUSG00000025006.19	novel	3589	29	NA	NA	-13	2712	combination_of_known_junctions	FALSE	canonical	2	4	junction_18	20.5163957671444	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTGTGTTCTCTTCCTT	9875	False	NA	-2	True	AATAAA	-22	NA	40502208	40280484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40365088_40365248_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
ENSMUSG00000025006.19_8	chr19	-	5949	3	FSM	ENSMUSG00000025006.19	ENSMUST00000225306.2	575	3	-2397	-2977	-2397	2711	multi-exon	FALSE	canonical	3	38	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTCTGTGTTCTCTTCCT	9040	False	NA	-3	True	AATAAA	-21	NA	40290667	40280485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_40283561_40284975_40285089_40287906
ENSMUSG00000025007.14_0	chr19	-	3436	19	FSM	ENSMUSG00000025007.14	ENSMUST00000176939.8	3427	19	-12	3	1	-3	multi-exon	FALSE	canonical	3	185	junction_12	241.939820085925	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGCACAGTTCGTTTT	NA	False	NA	-14	True	AATAAA	-15	NA	40576825	40538703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562660_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
ENSMUSG00000025007.14_1	chr19	-	3442	19	FSM	ENSMUSG00000025007.14	ENSMUST00000025979.13	3527	19	82	3	1	-3	multi-exon	FALSE	canonical	3	945	junction_12	98.5252364738204	1998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGCACAGTTCGTTTT	NA	False	NA	-14	True	AATAAA	-15	NA	40576825	40538703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
ENSMUSG00000025007.14_2	chr19	-	3377	18	NIC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	88	junction_17	265.434357090177	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCACAGTTCGTTTTC	NA	False	NA	-13	True	AATAAA	-16	NA	40576825	40538702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40576753
ENSMUSG00000025008.16_1	chr19	-	2717	14	FSM	ENSMUSG00000025008.16	ENSMUST00000025981.15	2743	14	24	2	-6	-2	multi-exon	FALSE	canonical	3	33	junction_10	4.39337855732112	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGACTTGACTTTTTTTCT	NA	False	NA	-3	True	CATAAA	-15	NA	40600653	40584891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_40585987_40591248_40591387_40593749_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
ENSMUSG00000025008.16_8	chr19	-	2048	13	ISM	ENSMUSG00000025008.16	ENSMUST00000025981.15	2743	14	3	5954	3	2698	5prime_fragment	FALSE	canonical	3	33	junction_9	4.56131072780134	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAACATATGTCTCTGGT	NA	False	NA	NA	False	AATAAA	-14	NA	40600674	40590843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_40591387_40593749_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
ENSMUSG00000025008.16_9	chr19	-	1704	12	FSM	ENSMUSG00000025008.16	ENSMUST00000135795.8	1686	12	-18	0	12	0	multi-exon	FALSE	canonical	3	33	junction_8	4.71501908359634	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGTTCTCAACCCATG	NA	False	NA	NA	False	AATAAA	-15	NA	40600665	40593541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
ENSMUSG00000025010.15_0	chr19	+	3802	6	FSM	ENSMUSG00000025010.15	ENSMUST00000025983.13	3819	6	10	7	10	-7	multi-exon	FALSE	canonical	3	13	junction_4	5.32916503778969	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAATGGTCTTGCTGCT	NA	False	NA	NA	False	AATAAA	-11	NA	40819732	40837009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_40819887_40820422_40820533_40825360_40825572_40833103_40833404_40833488_40833649_40834142
ENSMUSG00000025010.15_2	chr19	+	3802	6	NNC	ENSMUSG00000025010.15	novel	3819	6	NA	NA	-23	-7	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	8.01498596380555	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAATGGTCTTGCTGCT	NA	False	NA	NA	False	AATAAA	-11	NA	40819699	40837009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_40819887_40820422_40820533_40825360_40825572_40833103_40833404_40833521_40833649_40834142
ENSMUSG00000025010.15_7	chr19	+	1602	1	ISM	ENSMUSG00000025010.15	ENSMUST00000025983.13	3819	6	15688	4	15659	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGGTCTTGCTGCTTTT	3419	False	NA	NA	False	AATAAA	-14	NA	40835410	40837012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_40835400_40837000
ENSMUSG00000025016.12_0	chr19	-	3187	15	FSM	ENSMUSG00000025016.12	ENSMUST00000237871.2	3170	15	-23	6	-6	-6	multi-exon	TRUE	canonical	3	1017	junction_13	71.1689926176006	2053	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTGTTTTGTGACAG	NA	False	NA	-35	True	AATAAA	-9	NA	41252442	41202236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_41203579_41205539_41205617_41205786_41205871_41206608_41206756_41209675_41209745_41211522_41211663_41220781_41220913_41223119_41223215_41227116_41227284_41229015_41229148_41233882_41233961_41235081_41235243_41236344_41236468_41244583_41244780_41252197
ENSMUSG00000025017.11_0	chr19	-	1340	1	Genic_Genomic	ENSMUSG00000025017.11	novel	NA	NA	NA	NA	111395	15	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAAGTGCTTTTTGAGGA	2214	False	NA	NA	False	AGTAAA	-6	NA	41262140	41260800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_-_41260800_41262100
ENSMUSG00000025017.11_1	chr19	-	3007	6	ISM	ENSMUSG00000025017.11	ENSMUST00000059672.9	4482	17	88200	0	88200	0	3prime_fragment	FALSE	canonical	2	5	junction_4	1.6	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAGTAAACAAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	41285335	41260815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_41262793_41270309_41270447_41271518_41271590_41275908_41276065_41281191_41281265_41284742
ENSMUSG00000025019.18_1	chr19	+	6029	6	NIC	ENSMUSG00000025019.18	novel	4833	8	NA	NA	18	788	intron_retention	FALSE	canonical	1	3	junction_5	36.9918910032996	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGGATGAGTGACTCTTG	NA	False	NA	3	True	NA	NA	NA	41471093	41575763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313_41534447_41570216
ENSMUSG00000025019.18_17	chr19	+	3513	1	Genic_Genomic	ENSMUSG00000025019.18	novel	NA	NA	NA	NA	1442	788	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGGATGAGTGACTCTTG	NA	False	NA	3	True	NA	NA	NA	41572250	41575763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_41572200_41575800
ENSMUSG00000025019.18_22	chr19	+	6467	8	FSM	ENSMUSG00000025019.18	ENSMUST00000238398.2	5764	8	88	-791	88	791	multi-exon	FALSE	canonical	2	2	junction_1	34.4413135875021	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGAGTGACTCTTGTTT	NA	False	NA	6	True	NA	NA	NA	41471555	41575766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_41471738_41471965_41472040_41516459_41516526_41516999_41517080_41534313_41534447_41540887_41541176_41544046_41544141_41570216
ENSMUSG00000025019.18_4	chr19	+	6409	8	NIC	ENSMUSG00000025019.18	novel	4833	8	NA	NA	20	788	intron_retention	FALSE	canonical	3	26	junction_7	29.110626434836	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGGATGAGTGACTCTTG	NA	False	NA	3	True	NA	NA	NA	41471095	41575763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313_41534447_41540887_41541176_41544046_41544141_41570216
ENSMUSG00000025019.18_6	chr19	+	5902	5	NIC	ENSMUSG00000025019.18	novel	4833	8	NA	NA	15	791	intron_retention	FALSE	canonical	1	3	junction_4	41.0510353097215	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGAGTGACTCTTGTTT	NA	False	NA	6	True	NA	NA	NA	41471090	41575766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41570216
ENSMUSG00000025019.18_9	chr19	+	6259	6	NIC	ENSMUSG00000025019.18	novel	4833	8	NA	NA	24	788	intron_retention	FALSE	canonical	1	2	junction_2	35.1590671093532	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGGATGAGTGACTCTTG	NA	False	NA	3	True	NA	NA	NA	41471099	41575763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_41471223_41471965_41472040_41534313_41534447_41540887_41541176_41544046_41544141_41570216
ENSMUSG00000025024.8_0	chr19	-	1279	2	ISM	ENSMUSG00000025024.8	ENSMUST00000235830.2	1992	6	8105	10	8105	-4	3prime_fragment	FALSE	canonical	3	266	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTCCAGTGTGTTAAC	NA	False	NA	-12	True	AATAAA	-13	NA	53369748	53367830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_53369033_53369671
ENSMUSG00000025024.8_1	chr19	-	1963	6	FSM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	-19	4	-19	-4	multi-exon	FALSE	canonical	3	184	junction_4	26.9102211064867	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTCCAGTGTGTTAAC	NA	False	NA	-12	True	AATAAA	-13	NA	53379028	53367830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53377733_53377854_53378846
ENSMUSG00000025024.8_11	chr19	-	1391	3	ISM	ENSMUSG00000025024.8	ENSMUST00000235830.2	1992	6	5831	10	5831	-4	3prime_fragment	FALSE	canonical	3	218	junction_2	24	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTCCAGTGTGTTAAC	NA	False	NA	-12	True	AATAAA	-13	NA	53372022	53367830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_53369033_53369671_53369826_53371987
ENSMUSG00000025024.8_13	chr19	-	1980	6	FSM	ENSMUSG00000025024.8	ENSMUST00000236962.2	1478	6	-23	-479	-19	-4	multi-exon	FALSE	canonical	3	22	junction_3	83.1903840596977	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTCCAGTGTGTTAAC	NA	False	NA	-12	True	AATAAA	-13	NA	53379028	53367830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_53369033_53369671_53369826_53371987_53372167_53372884_53373028_53377733_53377854_53378846
ENSMUSG00000025024.8_4	chr19	-	727	1	ISM	ENSMUSG00000025024.8	ENSMUST00000235830.2	1992	6	9302	4	9302	2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGTGTGTTAACAAAGGG	NA	False	NA	-6	True	AATAAA	-19	NA	53368551	53367824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_53367800_53368600
ENSMUSG00000025025.15_0	chr19	+	2624	6	FSM	ENSMUSG00000025025.15	ENSMUST00000003870.15	2627	6	-3	6	-3	-6	multi-exon	FALSE	canonical	3	46	junction_1	71.8843515655528	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCAGTCGAGTTGTGTGT	NA	False	NA	12	True	AATAAA	-17	NA	53298945	53361718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_53299405_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
ENSMUSG00000025025.15_13	chr19	+	1403	1	ISM	ENSMUSG00000025025.15	ENSMUST00000003870.15	2627	6	61367	6	1862	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCAGTCGAGTTGTGTGT	3068	False	NA	12	True	AATAAA	-17	NA	53360315	53361718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_53360300_53361700
ENSMUSG00000025025.15_3	chr19	+	2404	6	FSM	ENSMUSG00000025025.15	ENSMUST00000111737.3	2340	6	69	-133	21	-6	multi-exon	FALSE	canonical	3	157	junction_1	29.7859027058103	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCAGTCGAGTTGTGTGT	4483	False	NA	12	True	AATAAA	-17	NA	53317912	53361718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_53318152_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
ENSMUSG00000025025.15_6	chr19	+	2340	6	FSM	ENSMUSG00000025025.15	ENSMUST00000025998.15	5036	6	173	2523	-65	-6	multi-exon	FALSE	canonical	3	12	junction_1	85.2478738737806	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCAGTCGAGTTGTGTGT	4632	False	NA	12	True	AATAAA	-17	NA	53318061	53361718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_53318237_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
ENSMUSG00000025026.16_0	chr19	+	4226	15	FSM	ENSMUSG00000025026.16	ENSMUST00000237430.2	4054	15	-179	7	-1	-7	multi-exon	TRUE	canonical	3	178	junction_5	22.1124214791929	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATATGCATTTGGTATA	2522	False	NA	1	True	AATAAA	-10	NA	53131225	53235511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_53131521_53205231_53205447_53215021_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53232740_53232837_53233428
ENSMUSG00000025026.16_13	chr19	+	3842	14	ISM	ENSMUSG00000025026.16	ENSMUST00000236296.2	4075	16	21937	7	18844	-7	3prime_fragment	FALSE	canonical	3	178	junction_4	22.8910462845192	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATATGCATTTGGTATA	7275	False	NA	1	True	AATAAA	-10	NA	53205320	53235511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_53205447_53215021_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53232740_53232837_53233428
ENSMUSG00000025026.16_14	chr19	+	3651	13	ISM	ENSMUSG00000025026.16	ENSMUST00000236296.2	4075	16	31703	7	28610	-7	3prime_fragment	FALSE	canonical	3	178	junction_3	23.4514865674273	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATATGCATTTGGTATA	NA	False	NA	1	True	AATAAA	-10	NA	53215086	53235511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53232740_53232837_53233428
ENSMUSG00000025026.16_25	chr19	+	1349	1	ISM	ENSMUSG00000025026.16	ENSMUST00000111741.10	4426	14	105289	319	47686	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATATGCATTTGGTATA	NA	False	NA	1	True	AATAAA	-10	NA	53234162	53235511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_53234200_53235500
ENSMUSG00000025027.19_0	chr19	-	2357	20	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	3	690	junction_19	186.942819408855	1119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTCTGCTTTGTCTGCCT	5117	False	NA	-4	True	AATAAA	-13	NA	53027014	52979614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
ENSMUSG00000025027.19_1	chr19	-	2444	21	FSM	ENSMUSG00000025027.19	ENSMUST00000183108.8	4078	21	1632	2	-18	-2	multi-exon	FALSE	canonical	3	790	junction_19	199.189727395767	1296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGCTCTGCTTTGTCTGCC	5118	False	NA	-5	True	AATAAA	-12	NA	53027013	52979615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
ENSMUSG00000025034.10_1	chr19	+	3150	6	FSM	ENSMUSG00000025034.10	ENSMUST00000026008.9	3580	6	0	430	0	-430	multi-exon	FALSE	canonical	0	0	junction_1	429.31275312993	1301	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAGAGAAATAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	46490140	46504857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46491453_46501161_46501258_46501546_46501781_46502891_46502924_46503060_46503177_46503497
ENSMUSG00000025035.10_0	chr19	-	855	6	FSM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	-25	13	-25	-2	multi-exon	FALSE	canonical	3	254	junction_1	35.3870032639103	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAGTTGAAATAGTATTAA	NA	False	NA	-34	True	AATAAA	-22	NA	46561557	46519547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_46519826_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
ENSMUSG00000025035.10_2	chr19	-	572	4	ISM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	21462	15	6761	-4	3prime_fragment	FALSE	canonical	3	254	junction_1	37.7918274528002	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATAGTTGAAATAGTATT	NA	False	NA	-36	True	AATAAA	-20	NA	46540070	46519549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_46519826_46530790_46530977_46531920_46531972_46540011
ENSMUSG00000025036.8_0	chr19	+	1558	12	FSM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	21	1626	21	-1626	multi-exon	FALSE	canonical	3	36	junction_10	6.85384611817119	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAACCAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	46561826	46583708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110
ENSMUSG00000025036.8_14	chr19	+	1190	1	ISM	ENSMUSG00000025036.8	ENSMUST00000237310.2	5253	10	22338	5	4582	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGAAACACTGTCTGCA	NA	False	NA	12	True	AATAAA	-12	NA	46584141	46585331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46584100_46585300
ENSMUSG00000025036.8_20	chr19	+	1316	11	ISM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	0	4213	0	2132	5prime_fragment	FALSE	canonical	3	36	junction_10	6.8622153857191	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGCTTACTCTGGCTCA	NA	False	NA	NA	False	TTTAAA	-17	NA	46561805	46581121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738
ENSMUSG00000025036.8_3	chr19	+	1408	13	NIC	ENSMUSG00000025036.8	novel	3205	12	NA	NA	-3	-3	combination_of_known_junctions	FALSE	canonical	2	5	junction_12	13.4440713906002	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGAAACACTGTCTGCA	NA	False	NA	12	True	AATAAA	-12	NA	46561800	46585331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110_46583308_46585106
ENSMUSG00000025037.7_0	chrX	+	1948	15	FSM	ENSMUSG00000025037.7	ENSMUST00000026013.6	4167	15	134	2085	134	-2085	multi-exon	FALSE	canonical	3	197	junction_7	23.3440330181188	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTACTGTGACTTTTGTGT	NA	False	NA	-1	True	AATAAA	-9	NA	16486070	16551972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_16486153_16500420_16500516_16505302_16505441_16524806_16524912_16525683_16525776_16528555_16528698_16530889_16531040_16531890_16532051_16539085_16539183_16543793_16543848_16547052_16547111_16548439_16548538_16550202_16550315_16551220_16551284_16551470
ENSMUSG00000025038.8_0	chrX	-	2275	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68062	-6	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATTGTTGACCATTTT	NA	False	NA	-15	True	ATTAAA	-11	NA	17117545	16998293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
ENSMUSG00000025038.8_8	chrX	-	2122	13	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68064	-6	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_12	30.7679486912382	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATTGTTGACCATTTT	NA	False	NA	-15	True	ATTAAA	-11	NA	17117543	16998293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17117502
ENSMUSG00000025040.14_1	chrX	-	1845	5	FSM	ENSMUSG00000025040.14	ENSMUST00000026016.13	1983	5	130	8	58	-8	multi-exon	FALSE	canonical	3	209	junction_3	21.435951110226	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGAAGTGATTGTGCTT	NA	False	NA	-17	True	AATAAA	-13	NA	17438434	17422810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541_17437699_17438391
ENSMUSG00000025040.14_10	chrX	-	1805	4	FSM	ENSMUSG00000025040.14	ENSMUST00000177213.8	1032	4	179	-952	162	-8	multi-exon	TRUE	canonical	3	209	junction_3	16.9901932498329	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGAAGTGATTGTGCTT	NA	False	NA	-17	True	AATAAA	-13	NA	17437701	17422810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541
ENSMUSG00000025040.14_3	chrX	-	884	1	ISM	ENSMUSG00000025040.14	ENSMUST00000026016.13	1983	5	14875	3	14174	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGATTGTGCTTATATA	NA	False	NA	-12	True	AATAAA	-18	NA	17423689	17422805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_17422800_17423700
ENSMUSG00000025041.18_10	chr19	-	2335	18	FSM	ENSMUSG00000025041.18	ENSMUST00000172239.3	3148	18	-18	831	-18	349	multi-exon	FALSE	canonical	3	36	junction_17	29.5968295318789	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCAGTTTTGTGTATCTG	NA	False	NA	-22	True	TTTAAA	-18	NA	47003610	46877097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_47003136
ENSMUSG00000025041.18_6	chr19	-	1897	18	FSM	ENSMUSG00000025041.18	ENSMUST00000168536.9	3728	18	1	1830	1	349	multi-exon	TRUE	canonical	3	118	junction_5	15.8666589126981	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCAGTTTTGTGTATCTG	7193	False	NA	-22	True	TTTAAA	-18	NA	46950746	46877097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950710
ENSMUSG00000025047.10_0	chr19	+	6028	36	FSM	ENSMUSG00000025047.10	ENSMUST00000072141.4	6761	36	11	722	11	-108	multi-exon	FALSE	canonical	3	156	junction_7	35.2497097976186	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGTGTGTGTGTGTAA	NA	False	NA	23	True	NA	NA	NA	47079217	47119582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_47079307_47081220_47081340_47082189_47082322_47083646_47083815_47085293_47085456_47086559_47086684_47087129_47087312_47089501_47089610_47091005_47091213_47092190_47092316_47092471_47092533_47093094_47093242_47094735_47094988_47095449_47095591_47095992_47096188_47096861_47097033_47097992_47098213_47099399_47099550_47100476_47100593_47101579_47102155_47102993_47103057_47105735_47105842_47107974_47108065_47108231_47108335_47108685_47108864_47112869_47112927_47113483_47113607_47114744_47114868_47115313_47115549_47115689_47115807_47116384_47116532_47116713_47116962_47117580_47117750_47118067_47118222_47118386_47118553_47119077
ENSMUSG00000025047.10_61	chr19	+	2897	17	ISM	ENSMUSG00000025047.10	ENSMUST00000072141.4	6761	36	22635	722	-12747	-108	3prime_fragment	FALSE	canonical	3	226	junction_5	22.5041662809356	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGTGTGTGTGTGTAA	9011	False	NA	23	True	NA	NA	NA	47101841	47119582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_47102155_47102993_47103057_47105735_47105842_47107974_47108065_47108231_47108335_47108685_47108864_47112869_47112927_47113483_47113607_47114744_47114868_47115313_47115549_47115689_47115807_47116384_47116532_47116713_47116962_47117580_47117750_47118067_47118222_47118386_47118553_47119077
ENSMUSG00000025049.7_0	chr19	+	3250	11	FSM	ENSMUSG00000025049.7	ENSMUST00000026027.7	3260	11	5	5	5	-5	multi-exon	FALSE	canonical	3	160	junction_3	39.3161544406367	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAATTTATTGTACAAATT	NA	False	NA	10	True	AATAAA	-22	NA	47056189	47071913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_47056766_47059419_47059658_47063251_47063568_47064174_47064339_47064435_47064572_47065712_47065834_47067206_47067337_47068979_47069145_47070247_47070426_47070582_47070761_47070865
ENSMUSG00000025049.7_1	chr19	+	804	2	ISM	ENSMUSG00000025049.7	ENSMUST00000026027.7	3260	11	5	12271	5	-12271	5prime_fragment	FALSE	canonical	3	300	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTGAGAAGTATGTGAAT	NA	False	NA	14	True	AATGAA	-11	NA	47056189	47059647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_47056766_47059419
ENSMUSG00000025049.7_3	chr19	+	3086	10	NIC	ENSMUSG00000025049.7	novel	3260	11	NA	NA	5	-4	combination_of_known_splicesites	FALSE	canonical	3	13	junction_7	71.9305220334178	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTTATTGTACAAATTG	NA	False	NA	11	True	AATAAA	-23	NA	47056189	47071914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_47056766_47059419_47059658_47063251_47063568_47064174_47064339_47064435_47064572_47065712_47065834_47067206_47067337_47070247_47070426_47070582_47070761_47070865
ENSMUSG00000025050.9_1	chr19	-	2142	10	FSM	ENSMUSG00000025050.9	ENSMUST00000026032.7	2159	10	13	4	-1	-2	multi-exon	FALSE	canonical	3	486	junction_3	49.2396507895471	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATTTTGAGGTGTGTTGA	NA	False	NA	-23	True	AATAAA	-13	NA	47039330	47022059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_47023125_47025676_47025764_47028482_47028582_47031204_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
ENSMUSG00000025050.9_14	chr19	-	2162	11	NIC	ENSMUSG00000025050.9	novel	2068	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_4	203.669830853762	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGAGGTGTGTTGACA	NA	False	NA	-21	True	AATAAA	-15	NA	47039330	47022057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_47023125_47025676_47025764_47028482_47028582_47030560_47030579_47031204_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
ENSMUSG00000025050.9_4	chr19	-	2140	10	NNC	ENSMUSG00000025050.9	novel	2159	10	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_2	147.016585945974	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTTGAGGTGTGTTGAC	NA	False	NA	-22	True	AATAAA	-14	NA	47039331	47022058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_47023125_47025676_47025760_47028482_47028582_47031204_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
ENSMUSG00000025050.9_9	chr19	-	4764	9	NIC	ENSMUSG00000025050.9	novel	2159	10	NA	NA	1	-1	intron_retention	FALSE	canonical	3	493	junction_6	49.5654554604313	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTTGAGGTGTGTTGAC	NA	False	NA	-22	True	AATAAA	-14	NA	47039328	47022058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_47023125_47025676_47025764_47028482_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
ENSMUSG00000025056.5_0	chrX	+	1792	2	FSM	ENSMUSG00000025056.5	ENSMUST00000026036.5	1808	2	13	3	13	-3	multi-exon	FALSE	canonical	3	839	junction_1	0	1060	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGGACTGGAGAGTTTTC	NA	False	NA	8	True	AATAAA	-45	NA	85235382	85239550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_85236581_85238956
ENSMUSG00000025059.17_0	chrX	-	3579	20	FSM	ENSMUSG00000025059.17	ENSMUST00000156390.8	4245	20	5	661	5	-661	multi-exon	FALSE	canonical	3	125	junction_19	13.2977827073068	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCTGCATTTCTCATTTC	NA	False	NA	-8	True	AATAAA	-16	NA	84820238	84746203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
ENSMUSG00000025059.17_1	chrX	-	1417	1	ISM	ENSMUSG00000025059.17	ENSMUST00000142152.2	4229	20	72612	659	8463	-659	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCATTTCTCATTTCCA	NA	False	NA	-6	True	AATAAA	-18	NA	84747618	84746201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_84746200_84747600
ENSMUSG00000025059.17_11	chrX	-	3661	21	NIC	ENSMUSG00000025059.17	novel	4279	21	NA	NA	-5	-660	combination_of_known_junctions	FALSE	canonical	3	6	junction_17	45.7159436083299	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGCATTTCTCATTTCC	NA	False	NA	-7	True	AATAAA	-17	NA	84820235	84746202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84793217_84793302_84797937_84798016_84804180_84804288_84804939_84805014_84820031
ENSMUSG00000025059.17_3	chrX	-	3604	21	FSM	ENSMUSG00000025059.17	ENSMUST00000113978.9	4279	21	16	659	0	-659	multi-exon	FALSE	canonical	3	8	junction_12	44.8534000940843	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCATTTCTCATTTCCA	NA	False	NA	-6	True	AATAAA	-18	NA	84820243	84746201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84782827_84782846_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
ENSMUSG00000025059.17_4	chrX	-	3497	19	FSM	ENSMUSG00000025059.17	ENSMUST00000026039.15	4340	19	184	659	2	-659	multi-exon	TRUE	canonical	3	19	junction_1	33.6576812358314	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCATTTCTCATTTCCA	NA	False	NA	-6	True	AATAAA	-18	NA	84820241	84746201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_84748003_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
ENSMUSG00000025060.16_0	chr19	+	7306	18	FSM	ENSMUSG00000025060.16	ENSMUST00000026043.12	7278	18	-34	6	-34	-6	multi-exon	FALSE	canonical	3	226	junction_7	39.0368471130284	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTATTTTGGGGAATTTT	NA	False	NA	15	True	AATAAA	-11	NA	47568082	47633679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_47568783_47597343_47597509_47600013_47600063_47600340_47600491_47603634_47603708_47603844_47604040_47604960_47605043_47607629_47607759_47608041_47609392_47610674_47610806_47611009_47611134_47613743_47613924_47623907_47624038_47624781_47624907_47625648_47625838_47626080_47626207_47627314_47627429_47630385
ENSMUSG00000025060.16_2	chr19	+	6075	17	NIC	ENSMUSG00000025060.16	novel	7278	18	NA	NA	-31	1353	intron_retention	FALSE	canonical	3	226	junction_7	40.0169885798519	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAGTGTATTTAATGACT	NA	False	NA	3	True	GATAAA	-16	NA	47568085	47632247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_47568783_47597343_47597509_47600013_47600063_47600340_47600491_47603634_47603708_47603844_47604040_47604960_47605043_47607629_47607759_47608041_47609392_47610674_47611134_47613743_47613924_47623907_47624038_47624781_47624907_47625648_47625838_47626080_47626207_47627314_47627429_47630385
ENSMUSG00000025060.16_37	chr19	+	5195	10	ISM	ENSMUSG00000025060.16	ENSMUST00000026043.12	7278	18	40493	6	-499	-6	3prime_fragment	FALSE	canonical	3	287	junction_7	29.5639085940615	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTATTTTGGGGAATTTT	NA	False	NA	15	True	AATAAA	-11	NA	47608609	47633679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_47609392_47610674_47610806_47611009_47611134_47613743_47613924_47623907_47624038_47624781_47624907_47625648_47625838_47626080_47626207_47627314_47627429_47630385
ENSMUSG00000025060.16_48	chr19	+	2368	1	ISM	ENSMUSG00000025060.16	ENSMUST00000026043.12	7278	18	63199	2	7747	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGGGGAATTTTCTTT	5877	False	NA	19	True	AATAAA	-15	NA	47631315	47633683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_47631300_47633700
ENSMUSG00000025066.11_1	chr19	+	1472	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	76	-60	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	527	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTCTCCAATTTGTTTT	NA	False	NA	8	True	ATTAAA	-14	NA	47720196	47723967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_47720261_47721068_47721192_47721240_47721428_47721957_47722351_47723262
ENSMUSG00000025066.11_2	chr19	+	1424	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	76	-60	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	623	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTCTCCAATTTGTTTT	NA	False	NA	8	True	ATTAAA	-14	NA	47720196	47723967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_47720261_47721068_47721144_47721240_47721428_47721957_47722351_47723262
ENSMUSG00000025068.9_0	chr19	+	1132	6	FSM	ENSMUSG00000025068.9	ENSMUST00000026050.8	1182	6	39	11	-21	-10	multi-exon	FALSE	canonical	3	277	junction_4	32.103582354622	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCATCGAAAACTGAGTCCA	8507	False	NA	10	True	ATTAAA	-19	NA	47843447	47853218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847970_47851817_47851922_47852735
ENSMUSG00000025068.9_1	chr19	+	989	4	ISM	ENSMUSG00000025068.9	ENSMUST00000237472.2	1138	6	-8	4794	0	4270	5prime_fragment	FALSE	canonical	3	347	junction_3	6.68331255192114	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCCGTGTTGAGATATTC	8528	False	NA	NA	False	AATATA	-20	NA	47843468	47848434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870
ENSMUSG00000025069.16_1	chr19	+	1321	9	FSM	ENSMUSG00000025069.16	ENSMUST00000056159.11	1351	9	6	24	-4	2	multi-exon	FALSE	canonical	0	0	junction_7	0.992156741649222	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATAGTCTAATTATCA	102	False	NA	NA	False	AATAAA	-12	NA	47854211	47874739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_47854369_47858124_47858200_47858647_47858763_47860092_47860243_47860454_47860564_47863268_47863492_47864834_47864937_47873094_47873202_47874456
ENSMUSG00000025076.13_0	chr19	+	2349	7	FSM	ENSMUSG00000025076.13	ENSMUST00000026062.10	2350	7	-4	5	-4	-5	multi-exon	FALSE	canonical	3	21	junction_1	6.36177822799744	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTCCTGACTGGTCCG	NA	False	NA	9	True	AATAAA	-42	NA	56385556	56430771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_56385750_56392847_56392958_56421673_56421811_56422233_56422363_56424658_56424835_56425150_56425281_56429297
ENSMUSG00000025076.13_3	chr19	+	1699	4	ISM	ENSMUSG00000025076.13	ENSMUST00000237055.3	842	6	6622	-1210	-2876	-168	3prime_fragment	FALSE	canonical	3	21	junction_1	2.86744175568088	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTCCAAGATTTTTTT	5104	False	NA	NA	False	AATACA	-15	NA	56422251	56430579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_56422363_56424658_56424835_56425150_56425281_56429297
ENSMUSG00000025076.13_4	chr19	+	1720	3	ISM	ENSMUSG00000025076.13	ENSMUST00000237055.3	842	6	9089	-1402	-409	-5	3prime_fragment	FALSE	canonical	3	25	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTCCTGACTGGTCCG	7571	False	NA	9	True	AATAAA	-42	NA	56424718	56430771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_56424835_56425150_56425281_56429297
ENSMUSG00000025076.13_5	chr19	+	1029	1	ISM	ENSMUSG00000025076.13	ENSMUST00000026062.10	2350	7	44182	5	4615	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTCCTGACTGGTCCG	3979	False	NA	9	True	AATAAA	-42	NA	56429742	56430771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_56429700_56430800
ENSMUSG00000025077.14_2	chr19	-	4082	10	FSM	ENSMUSG00000025077.15	ENSMUST00000182059.3	4109	10	24	3	24	-3	multi-exon	FALSE	canonical	3	154	junction_5	33.6088612653799	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCAGAGCATATTTGGAT	8189	False	NA	-13	True	AATAAA	-15	NA	56536460	56517603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068_56536136_56536405
ENSMUSG00000025077.14_3	chr19	-	2328	8	ISM	ENSMUSG00000025077.15	ENSMUST00000182059.3	4109	10	3035	6	2138	-6	3prime_fragment	FALSE	canonical	3	154	junction_5	16.4093054734943	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTACCAGAGCATATTTG	1723	False	NA	-16	True	AATAAA	-12	NA	56533449	56517606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446
ENSMUSG00000025077.14_4	chr19	-	4030	9	ISM	ENSMUSG00000025077.15	ENSMUST00000182059.3	4109	10	347	2	347	-2	3prime_fragment	FALSE	canonical	3	154	junction_5	17.1518949390439	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAGAGCATATTTGGATG	8512	False	NA	-12	True	AATAAA	-16	NA	56536137	56517602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068
ENSMUSG00000025077.14_5	chr19	-	4069	10	NNC	ENSMUSG00000025077.15	novel	4087	10	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_9	51.9973883484712	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAGCATATTTGGATGG	7982	False	NA	-11	True	AATAAA	-17	NA	56536667	56517601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068_56536136_56536627
ENSMUSG00000025077.14_6	chr19	-	4077	10	FSM	ENSMUSG00000025077.15	ENSMUST00000182276.3	4087	10	8	2	8	-2	multi-exon	FALSE	canonical	3	30	junction_9	50.5063252364383	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAGAGCATATTTGGATG	7982	False	NA	-12	True	AATAAA	-16	NA	56536667	56517602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068_56536136_56536618
ENSMUSG00000025077.14_8	chr19	-	264	1	ISM	ENSMUSG00000025077.15	ENSMUST00000183143.9	4156	10	18714	3	7949	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAGCATATTTGGATGG	NA	False	NA	-11	True	AATAAA	-17	NA	56517865	56517601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_56517600_56517900
ENSMUSG00000025078.10_0	chr19	+	2514	11	FSM	ENSMUSG00000025078.10	ENSMUST00000071423.7	8591	11	226	5851	226	-5851	multi-exon	FALSE	canonical	3	84	junction_1	12.4338248338956	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAACAAATTTCTTCATTT	NA	False	NA	NA	False	AATAAA	-28	NA	56536918	56586084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_56537293_56540190_56540344_56558847_56559304_56563189_56563312_56564586_56564717_56576601_56576702_56580007_56580240_56580824_56580948_56582091_56582299_56583231_56583452_56585687
ENSMUSG00000025078.10_15	chr19	+	2951	11	NIC	ENSMUSG00000025078.10	novel	8591	11	NA	NA	217	-5364	combination_of_known_junctions	FALSE	canonical	2	14	junction_3	27.9399355761605	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTACCTTTAACTGTAT	NA	False	NA	NA	False	TATAAA	-32	NA	56536909	56586571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_56537293_56540190_56540344_56558847_56559304_56563248_56563312_56564586_56564717_56576601_56576702_56580007_56580240_56580824_56580948_56582091_56582299_56583231_56583452_56585687
ENSMUSG00000025078.10_32	chr19	+	1783	4	ISM	ENSMUSG00000025078.10	ENSMUST00000071423.7	8591	11	44166	4981	21630	-4981	3prime_fragment	FALSE	canonical	3	99	junction_2	10.8423039781937	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTATGTGTTTTC	NA	False	NA	NA	False	TTTAAA	-36	NA	56580858	56586954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_56580948_56582091_56582299_56583231_56583452_56585687
ENSMUSG00000025078.10_35	chr19	+	3278	1	ISM	ENSMUSG00000025078.10	ENSMUST00000071423.7	8591	11	51962	3	29426	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTGTGTTTCTGTCTTG	5799	False	NA	14	True	ATTAAA	-14	NA	56588654	56591932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_56588700_56591900
ENSMUSG00000025082.9_0	chr19	+	4047	14	FSM	ENSMUSG00000025082.9	ENSMUST00000026068.8	4049	14	-2	4	-2	-4	multi-exon	TRUE	canonical	0	0	junction_13	1.44729905555591	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCGTTTGCCTAGGCAG	NA	False	NA	NA	False	AATAAA	-13	NA	56862678	56900506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_56863011_56869556_56869619_56873454_56873530_56875309_56875444_56882197_56882308_56886305_56886498_56889959_56890094_56890667_56890801_56891898_56891955_56893910_56894019_56894821_56895395_56897263_56897816_56898121_56898248_56899046
ENSMUSG00000025082.9_1	chr19	+	3137	8	ISM	ENSMUSG00000025082.9	ENSMUST00000026068.8	4049	14	27283	5	27283	-5	3prime_fragment	FALSE	canonical	0	0	junction_7	1.59078981795143	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATCGTTTGCCTAGGCA	NA	False	NA	NA	False	AATAAA	-12	NA	56889963	56900505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_56890094_56890667_56890801_56891898_56891955_56893910_56894019_56894821_56895395_56897263_56897816_56898121_56898248_56899046
ENSMUSG00000025083.19_0	chr19	-	3293	16	NNC	ENSMUSG00000025083.19	novel	3531	19	NA	NA	-750	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	3.28227563335765	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGGGTTTCCCTTGTAT	NA	False	NA	NA	False	AATAAA	-12	NA	56926420	56900791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_56901841_56902556_56902686_56902801_56902996_56904103_56904260_56904493_56904675_56904755_56905005_56905557_56905670_56906413_56906560_56908808_56909021_56911366_56911472_56911964_56912050_56913498_56913589_56916680_56916861_56918487_56918694_56925666_56925758_56926312
ENSMUSG00000025083.19_2	chr19	-	3575	19	FSM	ENSMUSG00000025083.19	ENSMUST00000118800.8	3531	19	-44	0	-14	0	multi-exon	FALSE	canonical	0	0	junction_18	3.34257976810918	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGGGTTTCCCTTGTA	NA	False	NA	NA	False	AATAAA	-11	NA	56996674	56900792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_56901841_56902556_56902686_56902801_56902996_56904103_56904260_56904493_56904675_56904755_56905005_56905557_56905670_56906413_56906560_56908808_56909021_56911366_56911472_56911964_56912050_56913498_56913589_56916680_56916861_56918487_56918694_56925666_56925758_56931876_56931972_56933136_56933212_56938569_56938699_56996582
ENSMUSG00000025085.17_0	chr19	-	5525	16	NIC	ENSMUSG00000025085.17	novel	5927	17	NA	NA	10	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	19.9193931188232	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGAGAGTGGCAGTCCTT	NA	False	NA	-7	True	AATAAA	-18	NA	57107429	57021703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035498_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57107183
ENSMUSG00000025085.17_10	chr19	-	5530	16	NIC	ENSMUSG00000025085.17	novel	5927	17	NA	NA	10	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	24.5351448606552	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCGAGAGTGGCAGTCCT	NA	False	NA	-8	True	AATAAA	-17	NA	57107429	57021704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035504_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57107183
ENSMUSG00000025085.17_3	chr19	-	5407	15	NIC	ENSMUSG00000025085.17	novel	5927	17	NA	NA	4	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	26.4856526428625	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGAGAGTGGCAGTCCTT	NA	False	NA	-7	True	AATAAA	-18	NA	57107452	57021703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57107183
ENSMUSG00000025085.17_4	chr19	-	2098	1	ISM	ENSMUSG00000025085.17	ENSMUST00000079360.12	7152	26	180663	539	9573	2	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGAGAGTGGCAGTCCTT	NA	False	NA	-7	True	AATAAA	-18	NA	57023801	57021703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_57021700_57023800
ENSMUSG00000025085.17_6	chr19	-	6031	21	NIC	ENSMUSG00000025085.17	novel	3184	23	NA	NA	-18	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	32.2897429534519	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGAGAGTGGCAGTCCTTT	7782	False	NA	-6	True	AATAAA	-19	NA	57170758	57021702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035498_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57121293_57121388_57123013_57123141_57140704_57140815_57143583_57143768_57161756_57161892_57170657
ENSMUSG00000025085.17_7	chr19	-	5629	17	NIC	ENSMUSG00000025085.17	novel	3184	23	NA	NA	-125	-1	combination_of_known_splicesites	TRUE	canonical	0	0	junction_3	27.0848637388118	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTGGCAGTCCTTTGAA	8091	False	NA	-3	True	AATAAA	-22	NA	57123265	57021699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035498_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57121293_57121388_57123013
ENSMUSG00000025086.14_0	chr19	+	1662	8	FSM	ENSMUSG00000025086.14	ENSMUST00000026073.14	3789	8	28	2099	1	1889	multi-exon	FALSE	canonical	3	146	junction_6	27.9131305507436	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGCTCTCCTGCCTGTT	NA	False	NA	9	True	TATAAA	-22	NA	57441371	57477338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57475696_57475754_57476440
ENSMUSG00000025086.14_2	chr19	+	4398	6	FSM	ENSMUSG00000025086.14	ENSMUST00000237166.2	2513	6	0	-1885	0	1885	multi-exon	FALSE	canonical	3	178	junction_4	16.6901168360201	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAAAATGCTCTCCTGCC	NA	False	NA	5	True	TATAAA	-18	NA	57441370	57477334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504
ENSMUSG00000025086.14_20	chr19	+	1751	1	NIC	ENSMUSG00000025086.14	novel	3789	8	NA	NA	34199	1889	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGCTCTCCTGCCTGTT	NA	False	NA	9	True	TATAAA	-22	NA	57475587	57477338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_57475600_57477300
ENSMUSG00000025089.16_0	chr19	-	4497	10	NIC	ENSMUSG00000025089.16	novel	4641	11	NA	NA	26	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	2.51415744421884	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGATGGCATAGGTTA	NA	False	NA	NA	False	AATAAA	-13	NA	58443707	58224041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_58226979_58227685_58227740_58252343_58252526_58255430_58255566_58258485_58258596_58288673_58289011_58440400_58440485_58441595_58441890_58442740_58443027_58443629
ENSMUSG00000025089.16_1	chr19	-	3866	8	NNC	ENSMUSG00000025089.16	novel	3224	10	NA	NA	12790	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2.9485382057929	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATATAGACATTAA	NA	False	NA	NA	False	NA	NA	NA	58430108	58224056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_58226979_58227685_58227740_58252343_58252526_58255430_58255566_58258485_58258596_58288673_58289011_58381004_58381020_58429997
ENSMUSG00000025090.10_1	chr19	+	845	5	ISM	ENSMUSG00000025090.10	ENSMUST00000235305.2	855	7	-8	25340	-8	-25283	5prime_fragment	FALSE	canonical	3	10	junction_1	12.8135670287395	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATATGGTTTTGTTATGA	NA	False	NA	NA	False	AATAAA	-18	NA	58500415	58516177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_58500459_58500742_58500868_58501047_58501134_58514279_58514397_58515703
ENSMUSG00000025090.10_10	chr19	+	828	4	NIC	ENSMUSG00000025090.10	novel	855	7	NA	NA	-1	0	intron_retention	FALSE	canonical	1	2	junction_2	18.5172592164415	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTAAGTTGGTCTGTCC	NA	False	NA	NA	False	ACTAAA	-5	NA	58500451	58541517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_58500868_58501047_58501134_58539855_58539948_58541283
ENSMUSG00000025090.10_13	chr19	+	1052	6	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	0	-1	intron_retention	FALSE	canonical	2	6	junction_4	13.1969693490589	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAAGAGGTCCTTGTACA	NA	False	NA	NA	False	AATACA	-13	NA	58500452	58541459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58539855_58539948_58541283
ENSMUSG00000025090.10_18	chr19	+	3082	8	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	2	1773	intron_retention	FALSE	canonical	2	13	junction_5	11.9608203936768	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAAAGATAAAGAGCATTT	NA	False	NA	NA	False	AATAAA	-10	NA	58500454	58543290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58524992_58525095_58525693_58525797_58539859_58539948_58541283
ENSMUSG00000025090.10_19	chr19	+	2128	2	ISM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	12287	25286	12287	-25286	internal_fragment	FALSE	canonical	3	35	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATATATGGTTTTGTTA	744	False	NA	NA	False	AATAAA	-15	NA	58512739	58516174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_58514397_58515703
ENSMUSG00000025090.10_20	chr19	+	813	6	ISM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	13824	-57	13824	0	3prime_fragment	FALSE	canonical	2	13	junction_3	10.7256701422335	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTAAGTTGGTCTGTCC	2281	False	NA	NA	False	ACTAAA	-5	NA	58514276	58541517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_58514397_58515703_58515870_58524992_58525095_58525693_58525797_58539859_58539948_58541283
ENSMUSG00000025090.10_22	chr19	+	892	7	NIC	ENSMUSG00000025090.10	novel	855	7	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	16.3851219776425	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTAAGTTGGTCTGTCC	NA	False	NA	NA	False	ACTAAA	-5	NA	58500425	58541517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58539855_58539948_58541283
ENSMUSG00000025090.10_23	chr19	+	857	5	ISM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	-13	25286	-13	-25286	5prime_fragment	FALSE	canonical	0	0	junction_1	16.7089048115069	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATATATGGTTTTGTTA	NA	False	NA	NA	False	AATAAA	-15	NA	58500439	58516174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703
ENSMUSG00000025090.10_3	chr19	+	4411	9	FSM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	-2	-3400	-2	3343	multi-exon	FALSE	canonical	0	0	junction_1	14.1686273153048	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAACCCTCTTAATCT	NA	False	NA	NA	False	AATAAA	-38	NA	58500450	58544860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58524992_58525095_58525693_58525797_58539859_58539948_58541283
ENSMUSG00000025090.10_5	chr19	+	2826	9	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	5	1775	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	12.4172259381876	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGATAAAGAGCATTTGC	NA	False	NA	NA	False	AATAAA	-12	NA	58500428	58543292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_58500459_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58524992_58525095_58525693_58525797_58539859_58539948_58541283
ENSMUSG00000025090.10_7	chr19	+	1094	4	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	-2	-25283	intron_retention	FALSE	canonical	3	27	junction_2	7.36357401145817	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATATGGTTTTGTTATGA	NA	False	NA	NA	False	AATAAA	-18	NA	58500450	58516177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_58500868_58501047_58501134_58514279_58514397_58515703
ENSMUSG00000025090.10_8	chr19	+	1684	3	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	-4	-26002	intron_retention	FALSE	canonical	3	27	junction_2	9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAATTTCTACTTCATTA	NA	False	NA	NA	False	AGTAAA	-15	NA	58500448	58515458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_58500868_58501047_58501134_58514279
ENSMUSG00000025092.8_0	chr19	-	5737	12	FSM	ENSMUSG00000025092.8	ENSMUST00000066285.6	5734	12	-4	1	-4	-1	multi-exon	TRUE	canonical	2	6	junction_2	4.33704016068239	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGGCCTAGAATCGTTTT	NA	False	NA	-2	True	AATAAA	-18	NA	58849420	58784182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_58788431_58789244_58789349_58792897_58793157_58793832_58793938_58794457_58794545_58797881_58798054_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58816684_58816771_58849278
ENSMUSG00000025092.8_1	chr19	-	2427	1	ISM	ENSMUSG00000025092.8	ENSMUST00000066285.6	5734	12	62807	1	3082	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGGCCTAGAATCGTTTT	7836	False	NA	-2	True	AATAAA	-18	NA	58786609	58784182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_58784200_58786600
ENSMUSG00000025102.15_0	chr7	-	754	5	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	2	1893	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	126.089254102005	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCTAAGCCTACAAC	NA	False	NA	NA	False	NA	NA	NA	81439211	81430036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439102
ENSMUSG00000025102.15_1	chr7	-	859	5	NNC	ENSMUSG00000025102.15	novel	504	4	NA	NA	0	1893	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_4	96.0325465662553	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCTAAGCCTACAAC	NA	False	NA	NA	False	NA	NA	NA	81439213	81430036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81438999
ENSMUSG00000025102.15_10	chr7	-	866	5	FSM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	13	8	0	-8	multi-exon	FALSE	canonical	0	0	junction_4	120.296508677517	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGCAATGGCTAGCAGTT	NA	False	NA	93	True	AATAAA	-9	NA	81439213	81431937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439102
ENSMUSG00000025102.15_11	chr7	-	878	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	2	-97	combination_of_known_junctions	FALSE	canonical	3	98	junction_4	83.5852857864349	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCAGTTATTTTTGGA	NA	False	NA	4	True	AGTAAA	-22	NA	81439211	81432026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81438999
ENSMUSG00000025102.15_14	chr7	-	780	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	16	-5	combination_of_known_junctions	FALSE	canonical	3	35	junction_4	106.699051073569	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATGGCTAGCAGTTTCG	NA	False	NA	96	True	AATAAA	-12	NA	81439197	81431934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439175
ENSMUSG00000025103.9_0	chr7	-	3032	8	FSM	ENSMUSG00000025103.9	ENSMUST00000026093.9	3001	8	-33	2	-33	-2	multi-exon	FALSE	canonical	3	689	junction_4	90.4076933695809	1100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTATTTGTCACCTCTCT	NA	False	NA	-6	True	AATAAA	-16	NA	81479212	81441823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_81443475_81443905_81444053_81446743_81446832_81450705_81450899_81455489_81455688_81465662_81465769_81467942_81468100_81478720
ENSMUSG00000025104.14_0	chr7	-	2046	1	ISM	ENSMUSG00000025104.14	ENSMUST00000107305.8	5887	6	51169	8	50719	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAACAATGCTCTTGTGAC	NA	False	NA	-10	True	AATAAA	-6	NA	81533052	81531006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_81531000_81533100
ENSMUSG00000025104.14_1	chr7	-	3046	6	FSM	ENSMUSG00000025104.14	ENSMUST00000107305.8	5887	6	28	2813	14	-2813	multi-exon	FALSE	canonical	3	38	junction_1	4.22374241638857	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACACCAAAAATAATTTTA	NA	False	NA	NA	False	AATAAA	-13	NA	81584193	81533811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_81535832_81543546_81543694_81549421_81549578_81550032_81550172_81555307_81555385_81583686
ENSMUSG00000025104.14_5	chr7	-	4067	4	FSM	ENSMUSG00000025104.14	ENSMUST00000149288.2	2320	4	-337	-1410	99	1410	multi-exon	FALSE	canonical	3	39	junction_3	4.10960933531265	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCGGTTTTCCGAGAC	NA	False	NA	NA	False	AATAAA	-13	NA	81584108	81546148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_81549578_81550032_81550172_81555307_81555385_81583686
ENSMUSG00000025130.12_0	chr11	-	2471	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	381	9	-31	-2	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	3472	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCCATTGTCACTGCTG	3748	False	NA	-13	True	AATAAA	-12	NA	120463698	120451132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
ENSMUSG00000025132.14_0	chr11	-	1820	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	40	7	40	-2	multi-exon	TRUE	canonical	3	3168	junction_5	160.793780974265	4137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGATTGTGTGGTCTGT	NA	False	NA	-17	True	AATAAA	-15	NA	120472410	120468936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
ENSMUSG00000025133.10_0	chr7	+	3170	23	FSM	ENSMUSG00000025133.10	ENSMUST00000026126.10	3240	23	64	6	7	-6	multi-exon	FALSE	canonical	3	369	junction_9	43.027187253819	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACCTAGCTGTTCTAG	997	False	NA	19	True	AATAAA	-7	NA	97130226	97190595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
ENSMUSG00000025133.10_10	chr7	+	3161	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	13	-6	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_1	91.9439732384675	88	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACCTAGCTGTTCTAG	1003	False	NA	19	True	AATAAA	-7	NA	97130232	97190595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_97130358_97134126_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
ENSMUSG00000025134.3_4	chr11	-	1144	6	FSM	ENSMUSG00000025134.3	ENSMUST00000026125.3	3527	6	-9	2392	-9	-4	multi-exon	FALSE	canonical	3	3672	junction_5	281.391257859941	2576	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGGAGCTGTCTGGTC	4297	False	NA	-11	True	AATAAA	-15	NA	120489200	120485338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120485694_120485805_120485981_120486080_120486145_120486745_120486894_120488460_120488593_120488930
ENSMUSG00000025135.13_1	chr11	+	632	3	FSM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	74	2523	-37	-101	multi-exon	FALSE	canonical	3	903	junction_1	470.5	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGTGCTGGAGGCCTCTG	3974	False	NA	28	True	AGTAAA	-17	NA	120489320	120496501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120489431_120490067_120490195_120496106
ENSMUSG00000025135.13_3	chr11	+	723	3	FSM	ENSMUSG00000025135.13	ENSMUST00000093140.5	962	3	138	101	138	-101	multi-exon	FALSE	canonical	3	1006	junction_1	419	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGTGCTGGAGGCCTCTG	4149	False	NA	28	True	AGTAAA	-17	NA	120489495	120496501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120489697_120490067_120490195_120496106
ENSMUSG00000025135.13_9	chr11	+	361	1	ISM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	6894	2523	1371	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGTGCTGGAGGCCTCTG	4174	False	NA	28	True	AGTAAA	-17	NA	120496140	120496501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120496100_120496500
ENSMUSG00000025137.16_0	chr11	-	2403	13	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	12	-1	intron_retention	FALSE	canonical	3	48	junction_6	110.81174601799	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTAGGCTCCCGACCC	NA	False	NA	-7	True	AATAAA	-15	NA	120508722	120500913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503671_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ENSMUSG00000025137.16_17	chr11	-	2651	12	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	8	-1	intron_retention	FALSE	canonical	3	226	junction_6	61.2106510474516	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTAGGCTCCCGACCC	NA	False	NA	-7	True	AATAAA	-15	NA	120508726	120500913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ENSMUSG00000025137.16_21	chr11	-	2188	13	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	0	-5	intron_retention	FALSE	canonical	3	184	junction_6	81.3758000472704	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACTCTGTAGGCTCCCG	NA	False	NA	-11	True	AATAAA	-11	NA	120508695	120500917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ENSMUSG00000025137.16_3	chr11	-	1844	14	FSM	ENSMUSG00000025137.16	ENSMUST00000026129.16	1881	14	36	1	8	-1	multi-exon	FALSE	canonical	3	184	junction_7	79.5574296680368	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTAGGCTCCCGACCC	NA	False	NA	-7	True	AATAAA	-15	NA	120508726	120500913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ENSMUSG00000025137.16_4	chr11	-	1795	13	FSM	ENSMUSG00000025137.16	ENSMUST00000106188.4	1486	13	20	-329	3	-1	multi-exon	FALSE	canonical	3	99	junction_7	91.5034911295131	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTAGGCTCCCGACCC	NA	False	NA	-7	True	AATAAA	-15	NA	120508731	120500913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ENSMUSG00000025137.16_40	chr11	-	2031	14	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	48	junction_7	107.105710100324	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACTCTGTAGGCTCCCG	NA	False	NA	-11	True	AATAAA	-11	NA	120508733	120500917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503671_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ENSMUSG00000025138.15_1	chr11	-	1698	10	FSM	ENSMUSG00000025138.15	ENSMUST00000080202.12	1727	10	28	1	-2	-1	multi-exon	FALSE	canonical	2	54	junction_9	11.3376897945103	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGTCCCGATGACTG	NA	False	NA	-2	True	ATTAAA	-14	NA	120515812	120509198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
ENSMUSG00000025138.15_19	chr11	-	1846	9	NIC	ENSMUSG00000025138.15	novel	1727	10	NA	NA	-1	0	intron_retention	FALSE	canonical	2	54	junction_8	11.7260393995586	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515817	120509197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120509876_120510988_120511096_120511249_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
ENSMUSG00000025138.15_2	chr11	-	1838	11	NIC	ENSMUSG00000025138.15	novel	1727	10	NA	NA	1	0	intron_retention	FALSE	canonical	2	6	junction_2	26.3286915740224	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515809	120509197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120509876_120509974_120510117_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
ENSMUSG00000025138.15_23	chr11	-	6775	11	Fusion	ENSMUSG00000025138.15_ENSMUSG00000051510.14	novel	1727	10	NA	NA	-1	0	intron_retention	FALSE	canonical	2	56	junction_8	105.806238001358	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	7401	False	NA	-1	True	ATTAAA	-15	NA	120524383	120509197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120520563_120520643_120520708_120524187
ENSMUSG00000025138.15_32	chr11	-	2868	9	NIC	ENSMUSG00000025138.15	novel	1727	10	NA	NA	0	0	intron_retention	FALSE	canonical	2	9	junction_1	22.3047080231955	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515825	120509197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120509876_120509974_120511096_120511249_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
ENSMUSG00000025138.15_4	chr11	-	1904	8	FSM	ENSMUSG00000025138.15	ENSMUST00000133625.8	1925	8	23	-2	-7	0	multi-exon	FALSE	canonical	2	54	junction_7	11.9965981572669	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515802	120509197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120509876_120510988_120511096_120511249_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
ENSMUSG00000025138.15_5	chr11	-	1760	9	ISM	ENSMUSG00000025138.15	ENSMUST00000080202.12	1727	10	31	2	1	0	intron_retention	FALSE	canonical	2	56	junction_8	11.0113577727726	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGTGTCCCGATGACT	NA	False	NA	-3	True	ATTAAA	-13	NA	120515809	120509199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498
ENSMUSG00000025138.15_6	chr11	-	1901	8	NIC	ENSMUSG00000025138.15	novel	1868	10	NA	NA	-2	-4	intron_retention	FALSE	canonical	2	56	junction_7	11.5599590423679	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCTTTGGTGTCCCGAT	NA	False	NA	-7	True	ATTAAA	-9	NA	120515812	120509203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120509876_120510988_120511096_120511249_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498
ENSMUSG00000025139.15_0	chr7	-	3702	6	FSM	ENSMUSG00000025139.15	ENSMUST00000001950.12	3788	6	84	2	12	-2	multi-exon	FALSE	canonical	3	274	junction_2	12.1556571192182	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATTTTTGTTCTTGAGT	2781	False	NA	-7	True	AATAAA	-19	NA	141456140	141435321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141456012
ENSMUSG00000025139.15_1	chr7	-	2120	1	ISM	ENSMUSG00000025139.15	ENSMUST00000001950.12	3788	6	18783	2	18604	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATTTTTGTTCTTGAGT	6561	False	NA	-7	True	AATAAA	-19	NA	141437441	141435321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_141435300_141437400
ENSMUSG00000025139.15_10	chr7	-	4808	5	NIC	ENSMUSG00000025139.15	novel	3788	6	NA	NA	11	-1	intron_retention	FALSE	canonical	3	286	junction_1	8.33666600026653	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTTTTGTTCTTGAGTA	2780	False	NA	-6	True	AATAAA	-20	NA	141456141	141435320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_141438319_141443243_141444592_141445720_141445904_141446476_141446627_141456012
ENSMUSG00000025139.15_5	chr7	-	3789	7	FSM	ENSMUSG00000025139.15	ENSMUST00000130439.3	1892	7	-93	-1804	14	-2	multi-exon	FALSE	canonical	3	12	junction_6	128.120602905578	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATTTTTGTTCTTGAGT	2783	False	NA	-7	True	AATAAA	-19	NA	141456138	141435321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141452431_141452521_141456012
ENSMUSG00000025140.16_1	chr11	-	1508	9	NIC	ENSMUSG00000025140.16	novel	2914	8	NA	NA	-12	-1060	combination_of_known_junctions	FALSE	canonical	2	46	junction_1	319.603269695415	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATGATTAGACTACTTCC	NA	False	NA	-14	True	NA	NA	NA	120534542	120527597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120528061_120531025_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
ENSMUSG00000025140.16_15	chr11	-	1821	8	FSM	ENSMUSG00000025140.16	ENSMUST00000026133.15	1861	8	22	18	-22	-18	multi-exon	FALSE	canonical	3	750	junction_7	93.9428832116752	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAAAAAAGAAAAAAAAA	NA	False	NA	-34	True	NA	NA	NA	120534552	120530259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
ENSMUSG00000025140.16_22	chr11	-	1774	7	ISM	ENSMUSG00000025140.16	ENSMUST00000026133.15	1861	8	461	18	356	-18	3prime_fragment	FALSE	canonical	3	976	junction_6	20.9735282889858	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAAAAAAGAAAAAAAAA	NA	False	NA	-34	True	NA	NA	NA	120534113	120530259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984
ENSMUSG00000025140.16_27	chr11	-	1819	8	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	1	-18	combination_of_known_junctions	FALSE	canonical	3	34	junction_7	343.012048339592	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAAAAAAGAAAAAAAAA	NA	False	NA	-34	True	NA	NA	NA	120534573	120530259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534528
ENSMUSG00000025140.16_33	chr11	-	1700	7	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	14	-18	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	364.341148132107	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAAAAAAGAAAAAAAAA	NA	False	NA	-34	True	NA	NA	NA	120534560	120530259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120534505
ENSMUSG00000025142.19_2	chr11	+	1757	16	FSM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	60	3	-4	0	multi-exon	FALSE	canonical	3	887	junction_3	62.8477525453377	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120563877	120600270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025142.19_5	chr11	+	2048	14	NIC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	-4	0	intron_retention	FALSE	canonical	3	887	junction_3	62.6465618847222	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120563877	120600270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120600073_120600169
ENSMUSG00000025142.19_53	chr11	+	2301	15	ISM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	385	3	3	0	3prime_fragment	FALSE	canonical	3	887	junction_2	62.0699079215344	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120564202	120600270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025142.19_61	chr11	+	1873	16	NIC	ENSMUSG00000025142.19	novel	870	8	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	238.262376383683	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120564205	120600270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_120564441_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025142.19_64	chr11	+	2072	16	NIC	ENSMUSG00000025142.19	novel	870	8	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	243.577411833601	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120564193	120600270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_120564628_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025144.18_1	chr11	-	604	5	FSM	ENSMUSG00000025144.18	ENSMUST00000055424.13	606	5	1	1	1	0	multi-exon	FALSE	canonical	3	556	junction_4	137.848422189012	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604563	120601768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120604518
ENSMUSG00000025144.18_12	chr11	-	561	4	ISM	ENSMUSG00000025144.18	ENSMUST00000106154.8	873	6	1835	1	86	0	3prime_fragment	FALSE	canonical	3	724	junction_3	77.8559924190525	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120602723	120601768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669
ENSMUSG00000025144.18_2	chr11	-	2481	3	ISM	ENSMUSG00000025144.18	ENSMUST00000106154.8	873	6	2	1	2	0	intron_retention	FALSE	canonical	3	880	junction_2	8.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604556	120601768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120602133_120602215_120602305_120602528
ENSMUSG00000025144.18_3	chr11	-	552	4	NIC	ENSMUSG00000025144.18	novel	692	4	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	126	junction_3	359.512942125253	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604563	120601768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120602133_120602215_120602305_120602528_120602583_120604518
ENSMUSG00000025144.18_6	chr11	-	874	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106154.8	873	6	-2	1	-2	0	multi-exon	FALSE	canonical	3	17	junction_5	397.451380674417	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604560	120601768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603539_120604518
ENSMUSG00000025144.18_9	chr11	-	2571	2	NIC	ENSMUSG00000025144.18	novel	692	4	NA	NA	1	0	intron_retention	FALSE	canonical	3	880	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604563	120601768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120602305_120602528
ENSMUSG00000025145.14_0	chr11	+	2459	18	FSM	ENSMUSG00000025145.14	ENSMUST00000026139.14	2492	18	28	5	2	0	multi-exon	FALSE	canonical	3	36	junction_12	7.88805763716247	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTCTCGTCCAGTTCC	6092	False	NA	NA	False	AATACA	-19	NA	120604778	120611949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609547_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
ENSMUSG00000025145.14_17	chr11	+	2778	17	NIC	ENSMUSG00000025145.14	novel	2390	17	NA	NA	2	0	intron_retention	FALSE	canonical	3	36	junction_12	7.30154093325512	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTCTCGTCCAGTTCC	6092	False	NA	NA	False	AATACA	-19	NA	120604778	120611949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
ENSMUSG00000025145.14_26	chr11	+	2221	17	ISM	ENSMUSG00000025145.14	ENSMUST00000026139.14	2492	18	484	6	431	-1	3prime_fragment	FALSE	canonical	3	36	junction_11	8.06128866869311	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAATTCTCGTCCAGTTC	6548	False	NA	NA	False	AATACA	-18	NA	120605234	120611948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609547_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
ENSMUSG00000025145.14_36	chr11	+	2573	18	NIC	ENSMUSG00000025145.14	novel	2492	18	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	12.9044934637937	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTCTCGTCCAGTTCC	6083	False	NA	NA	False	AATACA	-19	NA	120604769	120611949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_120604880_120604993_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609547_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
ENSMUSG00000025145.14_8	chr11	+	2876	16	NIC	ENSMUSG00000025145.14	novel	2390	17	NA	NA	2	2	intron_retention	FALSE	canonical	3	45	junction_11	6.07581727470104	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTCGTCCAGTTCCTT	6092	False	NA	NA	False	AATACA	-21	NA	120604778	120611951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
ENSMUSG00000025147.8_1	chr7	-	1461	5	FSM	ENSMUSG00000025147.8	ENSMUST00000084418.4	1490	5	26	3	6	-3	multi-exon	FALSE	canonical	3	149	junction_3	10.8857705285386	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCTGTGTCCTCTCAGC	NA	False	NA	-37	True	AATAAA	-15	NA	141614776	141562289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570081_141570243_141614721
ENSMUSG00000025147.8_6	chr7	-	1426	5	FSM	ENSMUSG00000025147.8	ENSMUST00000210684.2	958	5	29	-497	9	0	multi-exon	FALSE	canonical	2	4	junction_3	69.7006994226026	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGCCATTTCATATTAT	NA	False	NA	-20	True	AATAAA	-32	NA	141614773	141562272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570130_141570243_141614721
ENSMUSG00000025147.8_7	chr7	-	1459	5	NNC	ENSMUSG00000025147.8	novel	1490	5	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	65.2241328037407	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGTGTCCTCTCAGCCT	NA	False	NA	-35	True	AATAAA	-17	NA	141614776	141562287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_141563312_141563989_141564115_141569815_141569910_141570081_141570243_141614721
ENSMUSG00000025147.8_8	chr7	-	1422	4	ISM	ENSMUSG00000025147.8	ENSMUST00000209732.2	977	5	9569	-690	9445	-2	3prime_fragment	FALSE	canonical	3	149	junction_3	12.2836838484589	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCTGCCATTTCATATT	NA	False	NA	-22	True	AATAAA	-30	NA	141570243	141562274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570081
ENSMUSG00000025151.17_0	chrX	-	2692	13	FSM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	121	8	-19	-6	multi-exon	FALSE	canonical	3	1240	junction_10	166.264514821681	2345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAATTAAGTGTGCTT	NA	False	NA	-10	True	AATAAA	-13	NA	93585628	93579087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
ENSMUSG00000025151.17_1	chrX	-	2914	12	FSM	ENSMUSG00000025151.17	ENSMUST00000153386.8	2884	12	-32	2	-19	-2	multi-exon	TRUE	canonical	3	1240	junction_9	165.668493041908	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTAAGTGTGCTTCTCA	NA	False	NA	-6	True	AATAAA	-17	NA	93585628	93579083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
ENSMUSG00000025151.17_6	chrX	-	2618	12	NIC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-19	-6	combination_of_known_splicesites	FALSE	canonical	3	123	junction_11	424.670839962022	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAATTAAGTGTGCTT	NA	False	NA	-10	True	AATAAA	-13	NA	93585628	93579087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93585497
ENSMUSG00000025153.10_1	chr11	-	2882	12	ISM	ENSMUSG00000025153.10	ENSMUST00000206589.2	8333	43	12670	-27	-1724	27	3prime_fragment	TRUE	canonical	3	550	junction_10	52.5128870448495	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTGCCTTCGGTTCAG	8887	False	NA	-13	True	ATTAAA	-13	NA	120702251	120697903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116
ENSMUSG00000025153.10_10	chr11	-	4799	22	ISM	ENSMUSG00000025153.10	ENSMUST00000055655.9	10050	43	9845	1233	753	26	3prime_fragment	FALSE	canonical	3	495	junction_21	59.4655715100035	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCACTGCCTTCGGTTCA	8208	False	NA	-14	True	ATTAAA	-12	NA	120705528	120697904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704155_120704231_120704397_120704479_120704867_120705302
ENSMUSG00000025153.10_15	chr11	-	4421	21	ISM	ENSMUSG00000025153.10	ENSMUST00000206589.2	8333	43	10207	-26	1567	26	3prime_fragment	FALSE	canonical	3	530	junction_19	54.773419648585	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCACTGCCTTCGGTTCA	9022	False	NA	-14	True	ATTAAA	-12	NA	120704714	120697904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704155_120704231_120704397_120704479
ENSMUSG00000025153.10_2	chr11	-	3465	16	ISM	ENSMUSG00000025153.10	ENSMUST00000206589.2	8333	43	11721	-24	-2673	24	3prime_fragment	FALSE	canonical	3	550	junction_10	50.9057516942394	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGCACTGCCTTCGGTT	7938	False	NA	-16	True	ATTAAA	-10	NA	120703200	120697906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125
ENSMUSG00000025153.10_27	chr11	-	3302	15	ISM	ENSMUSG00000025153.10	ENSMUST00000206589.2	8333	43	11966	-24	-2428	24	3prime_fragment	FALSE	canonical	3	550	junction_10	51.349194695909	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGCACTGCCTTCGGTT	8183	False	NA	-16	True	ATTAAA	-10	NA	120702955	120697906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864
ENSMUSG00000025153.10_37	chr11	-	3792	18	ISM	ENSMUSG00000025153.10	ENSMUST00000206589.2	8333	43	11082	-27	2442	27	3prime_fragment	FALSE	canonical	3	550	junction_10	51.8507306592317	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTGCCTTCGGTTCAG	9897	False	NA	-13	True	ATTAAA	-13	NA	120703839	120697903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795
ENSMUSG00000025153.10_4	chr11	-	8376	43	FSM	ENSMUSG00000025153.10	ENSMUST00000055655.9	10050	43	439	1235	-13	24	multi-exon	FALSE	canonical	3	375	junction_39	98.8392726301593	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGCACTGCCTTCGGTT	NA	False	NA	-16	True	ATTAAA	-10	NA	120714934	120697906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704155_120704231_120704397_120704479_120704867_120705302_120705590_120705837_120706042_120706116_120706297_120706436_120706617_120706707_120706789_120706865_120707058_120707130_120707304_120707447_120707564_120707672_120707877_120707950_120708086_120708298_120708394_120708811_120709002_120709258_120709447_120709563_120710027_120710628_120710764_120710854_120710971_120711070_120711194_120711357_120711559_120711724_120711899_120712903_120713057_120713542_120713679_120714855
ENSMUSG00000025153.10_42	chr11	-	5014	23	ISM	ENSMUSG00000025153.10	ENSMUST00000055655.9	10050	43	9380	1235	288	24	3prime_fragment	FALSE	canonical	3	495	junction_21	62.8051723142409	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGCACTGCCTTCGGTT	7743	False	NA	-16	True	ATTAAA	-10	NA	120705993	120697906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704155_120704231_120704397_120704479_120704867_120705302_120705590_120705837
ENSMUSG00000025153.10_7	chr11	-	2084	7	ISM	ENSMUSG00000025153.10	ENSMUST00000206589.2	8333	43	14112	-28	-282	28	3prime_fragment	FALSE	canonical	3	670	junction_5	14.996295838936	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGCCTTCGGTTCAGT	NA	False	NA	-12	True	ATTAAA	-14	NA	120700809	120697902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629
ENSMUSG00000025153.10_9	chr11	-	7108	35	ISM	ENSMUSG00000025153.10	ENSMUST00000055655.9	10050	43	5498	1235	-3594	24	3prime_fragment	FALSE	canonical	3	397	junction_28	90.0666467958695	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGCACTGCCTTCGGTT	3861	False	NA	-16	True	ATTAAA	-10	NA	120709875	120697906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704155_120704231_120704397_120704479_120704867_120705302_120705590_120705837_120706042_120706116_120706297_120706436_120706617_120706707_120706789_120706865_120707058_120707130_120707304_120707447_120707564_120707672_120707877_120707950_120708086_120708298_120708394_120708811_120709002_120709258_120709447_120709563
ENSMUSG00000025154.16_1	chr19	-	5098	12	FSM	ENSMUSG00000025154.16	ENSMUST00000026150.15	5103	12	2	3	2	-3	multi-exon	FALSE	canonical	3	296	junction_2	42.9826026693522	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCTGTGGGTTCTGACTG	4529	False	NA	NA	False	ATTAAA	-14	NA	41790484	41755029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_41758636_41761488_41761568_41762504_41762616_41767548_41767648_41769596_41769789_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790410
ENSMUSG00000025154.16_12	chr19	-	5056	12	FSM	ENSMUSG00000025154.16	ENSMUST00000177495.2	1652	12	-1	-3403	-1	-3	multi-exon	FALSE	canonical	3	21	junction_5	104.114844409653	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCTGTGGGTTCTGACTG	4526	False	NA	NA	False	ATTAAA	-14	NA	41790487	41755029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_41758636_41761488_41761568_41762504_41762616_41767548_41767648_41769596_41769744_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790410
ENSMUSG00000025154.16_4	chr19	-	2567	1	ISM	ENSMUSG00000025154.16	ENSMUST00000026150.15	5103	12	32890	3	32890	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCTGTGGGTTCTGACTG	NA	False	NA	NA	False	ATTAAA	-14	NA	41757596	41755029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_41755000_41757600
ENSMUSG00000025155.16_13	chr11	-	2100	14	NIC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	197.871304777721	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCATTTGCAGAGATCT	NA	False	NA	-23	True	AATAAA	-10	NA	120687214	120680033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686764
ENSMUSG00000025155.16_22	chr11	-	1899	14	FSM	ENSMUSG00000025155.16	ENSMUST00000167023.8	1909	14	6	4	0	0	multi-exon	FALSE	canonical	1	70	junction_13	260.320262471546	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATTTGCAGAGATCTCT	NA	False	NA	-21	True	AATAAA	-12	NA	120687215	120680031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686968
ENSMUSG00000025155.16_9	chr11	-	1822	14	NIC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	178.060258399514	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCATTTGCAGAGATCTC	NA	False	NA	-22	True	AATAAA	-11	NA	120687215	120680032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
ENSMUSG00000025156.18_0	chr11	+	1841	14	FSM	ENSMUSG00000025156.18	ENSMUST00000116305.8	1827	14	-16	2	4	-1	multi-exon	FALSE	canonical	3	682	junction_1	155.049677093711	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCAAGGCTCCTTTCCTT	1408	False	NA	0	True	ATTAAA	-17	NA	120675114	120679926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ENSMUSG00000025156.18_1	chr11	+	1913	13	FSM	ENSMUSG00000025156.18	ENSMUST00000100134.10	1925	13	14	-2	4	2	multi-exon	FALSE	canonical	3	682	junction_1	150.079122650539	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCAAGGCTCCTTTCCT	1408	False	NA	-1	True	ATTAAA	-16	NA	120675114	120679925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
ENSMUSG00000025156.18_44	chr11	+	2013	14	FSM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	-15	2	-15	-1	multi-exon	FALSE	canonical	3	238	junction_1	255.452956564905	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCAAGGCTCCTTTCCTT	1619	False	NA	0	True	ATTAAA	-17	NA	120675325	120679926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ENSMUSG00000025156.18_6	chr11	+	1841	14	FSM	ENSMUSG00000025156.18	ENSMUST00000208737.2	1843	14	1	1	1	-1	multi-exon	TRUE	canonical	3	121	junction_6	299.627579489159	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCAAGGCTCCTTTCCTT	1405	False	NA	0	True	ATTAAA	-17	NA	120675111	120679926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677837_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ENSMUSG00000025157.9_0	chr19	+	1803	11	FSM	ENSMUSG00000025157.9	ENSMUST00000026154.9	1821	11	9	9	9	0	multi-exon	FALSE	canonical	3	323	junction_7	37.0513157661101	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATATGTAGCTTCTC	4148	False	NA	9	True	AATAAA	-15	NA	41921937	41932534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ENSMUSG00000025157.9_1	chr19	+	1859	12	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_8	134.380796050282	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATATGTAGCTTCTC	4140	False	NA	9	True	AATAAA	-15	NA	41921929	41932534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ENSMUSG00000025157.9_15	chr19	+	1891	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	121.95691862293	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATATGTAGCTTCTC	4148	False	NA	9	True	AATAAA	-15	NA	41921937	41932534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ENSMUSG00000025158.8_1	chr11	-	2115	8	FSM	ENSMUSG00000025158.8	ENSMUST00000026156.8	2118	8	4	-1	4	-1	multi-exon	FALSE	canonical	3	122	junction_3	23.1137382947714	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGGCTCCTCTTGTCA	NA	False	NA	-5	True	AGTAAA	-18	NA	120675029	120671572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120672730_120672804_120672891_120673208_120673375_120673454_120673544_120673832_120673987_120674093_120674197_120674560_120674610_120674718
ENSMUSG00000025158.8_4	chr11	-	2504	6	FSM	ENSMUSG00000025158.8	ENSMUST00000123273.2	2467	6	-38	1	-16	-1	multi-exon	FALSE	canonical	3	152	junction_3	12.2081939696255	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGGCTCCTCTTGTCA	NA	False	NA	-5	True	AGTAAA	-18	NA	120675049	120671572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120672730_120672804_120672891_120673208_120673987_120674093_120674197_120674560_120674610_120674718
ENSMUSG00000025158.8_5	chr11	-	2045	7	NIC	ENSMUSG00000025158.8	novel	2118	8	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	56.0518113494609	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGTGGCTCCTCTTGTC	NA	False	NA	-6	True	AGTAAA	-17	NA	120675049	120671573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120672730_120672804_120672891_120673208_120673375_120673832_120673987_120674093_120674197_120674560_120674610_120674718
ENSMUSG00000025159.9_0	chr19	-	3469	31	FSM	ENSMUSG00000025159.9	ENSMUST00000171561.8	6607	31	22	3116	1	3	multi-exon	FALSE	canonical	3	95	junction_15	35.2197703317643	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCACGTGTACTGCCTT	NA	False	NA	-5	True	AATAAA	-19	NA	41969574	41932640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942457_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
ENSMUSG00000025159.9_1	chr19	-	3466	31	NIC	ENSMUSG00000025159.9	novel	6607	31	NA	NA	1	3	combination_of_known_junctions	FALSE	canonical	3	137	junction_15	29.8713723971445	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCACGTGTACTGCCTT	NA	False	NA	-5	True	AATAAA	-19	NA	41969574	41932640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
ENSMUSG00000025161.17_0	chr11	+	2208	6	FSM	ENSMUSG00000025161.17	ENSMUST00000168579.8	4335	6	29	2098	29	-5	multi-exon	FALSE	canonical	3	280	junction_1	37.4197808652055	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAAGTGGTTCTGGCCCTC	NA	False	NA	17	True	NA	NA	NA	120839935	120849596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120839977_120844999_120845095_120846051_120846296_120846624_120846769_120847180_120847949_120848680
ENSMUSG00000025161.17_1	chr11	+	2113	5	FSM	ENSMUSG00000025161.17	ENSMUST00000100130.10	2386	5	43	230	29	-5	multi-exon	FALSE	canonical	3	33	junction_1	128.437484793186	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAAGTGGTTCTGGCCCTC	NA	False	NA	17	True	NA	NA	NA	120839935	120849596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120839977_120846051_120846296_120846624_120846769_120847180_120847949_120848680
ENSMUSG00000025161.17_17	chr11	+	2028	4	ISM	ENSMUSG00000025161.17	ENSMUST00000100130.10	2386	5	6203	230	44	-5	3prime_fragment	FALSE	canonical	3	287	junction_3	28.7170100579198	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAAGTGGTTCTGGCCCTC	NA	False	NA	17	True	NA	NA	NA	120846095	120849596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120846296_120846624_120846769_120847180_120847949_120848680
ENSMUSG00000025162.19_2	chr11	-	3651	9	FSM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	18	6	18	-6	multi-exon	FALSE	canonical	3	400	junction_1	79.8474130764423	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTTCTTCCCTCCCCTTT	794	False	NA	-17	True	AATAAA	-16	NA	120882138	120852580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ENSMUSG00000025162.19_3	chr11	-	3714	10	FSM	ENSMUSG00000025162.19	ENSMUST00000070575.14	3500	10	-220	6	18	-6	multi-exon	TRUE	canonical	3	176	junction_1	174.428237039028	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTTCTTCCCTCCCCTTT	794	False	NA	-17	True	AATAAA	-16	NA	120882138	120852580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120854733_120855773_120855837_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ENSMUSG00000025162.19_6	chr11	-	1521	1	ISM	ENSMUSG00000025162.19	ENSMUST00000070575.14	3500	10	27817	6	2411	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTTCTTCCCTCCCCTTT	2140	False	NA	-17	True	AATAAA	-16	NA	120854101	120852580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120852600_120854100
ENSMUSG00000025163.7_0	chr11	-	1008	4	FSM	ENSMUSG00000025163.7	ENSMUST00000026159.6	982	4	-32	6	-32	-6	multi-exon	FALSE	canonical	3	9	junction_2	2.49443825784929	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAGCACTTGTTTTTGT	7864	False	NA	NA	False	AATAAA	-16	NA	120930276	120927578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120927977_120928505_120928643_120928861_120929177_120930118
ENSMUSG00000025169.7_0	chr11	-	1267	9	FSM	ENSMUSG00000025169.7	ENSMUST00000026169.7	1308	9	24	17	24	-17	multi-exon	FALSE	canonical	3	143	junction_7	19.9483708607996	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAACAGCTAACCCAAGTG	NA	False	NA	-24	True	AGTAAA	-24	NA	121095513	121068433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_121068765_121074236_121074361_121085905_121086060_121087562_121087620_121088256_121088322_121090591_121090635_121091736_121091813_121093716_121093935_121095314
ENSMUSG00000025171.3_0	chr19	+	1755	3	FSM	ENSMUSG00000025171.3	ENSMUST00000026170.3	1529	3	-227	1	-227	-1	multi-exon	FALSE	canonical	3	94	junction_1	5.5	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCCTAGCACATGACTTC	NA	False	NA	9	True	AATAAA	-15	NA	41969974	42023081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_41970448_42020327_42020556_42022027
ENSMUSG00000025171.3_5	chr19	+	871	1	Genic_Genomic	ENSMUSG00000025171.3	novel	NA	NA	NA	NA	16625	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTAGCACATGACTTCCT	4	True	NA	11	True	AATAAA	-17	NA	42022212	42023083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_42022200_42023100
ENSMUSG00000025173.14_0	chr11	-	2250	10	FSM	ENSMUSG00000025173.14	ENSMUST00000026173.13	2321	10	57	14	5	-14	multi-exon	FALSE	canonical	3	419	junction_4	31.7350139610984	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTATCTGTAAAGAGCAG	NA	False	NA	-13	True	AATAAA	-19	NA	121245214	121218063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
ENSMUSG00000025173.14_1	chr11	-	2219	10	NNC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	2	-14	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_4	138.714023252567	97	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTATCTGTAAAGAGCAG	NA	False	NA	-13	True	AATAAA	-19	NA	121245217	121218063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221025_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
ENSMUSG00000025178.10_0	chr19	+	3537	9	FSM	ENSMUSG00000025178.10	ENSMUST00000066778.6	3604	9	8	59	8	3	multi-exon	FALSE	canonical	3	416	junction_8	28.6135348218286	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCTCTGTCCAGTTTC	NA	False	NA	16	True	TTTAAA	-34	NA	42078917	42110467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_42079376_42089075_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42103576_42104323_42104458_42104945_42105006_42108231
ENSMUSG00000025178.10_3	chr19	+	4296	8	FSM	ENSMUSG00000025178.10	ENSMUST00000235988.2	4267	8	-26	-3	-2	3	multi-exon	FALSE	canonical	3	416	junction_7	29.3445402215868	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCTCTGTCCAGTTTC	NA	False	NA	16	True	TTTAAA	-34	NA	42078906	42110467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_42079376_42089075_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42104458_42104945_42105006_42108231
ENSMUSG00000025178.10_47	chr19	+	1570	1	NIC	ENSMUSG00000025178.10	novel	1939	10	NA	NA	5781	3	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCTCTGTCCAGTTTC	2727	False	NA	16	True	TTTAAA	-34	NA	42108897	42110467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_42108900_42110500
ENSMUSG00000025178.10_5	chr19	+	1928	10	FSM	ENSMUSG00000025178.10	ENSMUST00000235932.2	1939	10	8	3	7	3	multi-exon	FALSE	canonical	3	49	junction_9	126.842081267405	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCTCTGTCCAGTTTC	NA	False	NA	16	True	TTTAAA	-34	NA	42078916	42110467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_42079376_42089075_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42103576_42104323_42104458_42104945_42105006_42108231_42108424_42110033
ENSMUSG00000025184.11_0	chr19	+	3084	7	FSM	ENSMUSG00000025184.11	ENSMUST00000026188.10	4112	7	47	981	8	352	multi-exon	FALSE	canonical	3	76	junction_3	8.08290376865476	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATAAATCATTATGGTGT	NA	False	NA	NA	False	ATTAAA	-12	NA	42507244	42579801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_42507297_42550990_42552781_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42579043
ENSMUSG00000025184.11_7	chr19	+	2764	6	ISM	ENSMUSG00000025184.11	ENSMUST00000026188.10	4112	7	44064	978	-1418	355	3prime_fragment	FALSE	canonical	3	76	junction_2	7.93977329651168	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATCATTATGGTGTTTA	323	False	NA	NA	False	ATTAAA	-15	NA	42551261	42579804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_42552781_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42579043
ENSMUSG00000025185.15_0	chr19	-	3721	15	FSM	ENSMUSG00000025185.15	ENSMUST00000026190.14	3738	15	38	-21	-3	21	multi-exon	TRUE	canonical	1	2	junction_12	2.28124563181019	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAACTGATTTTACAGCA	NA	False	NA	NA	False	AATAAA	-18	NA	42601214	42582399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_42583844_42585936_42586049_42586383_42586521_42587139_42587256_42588315_42588560_42590611_42590775_42591625_42591794_42592293_42592449_42592570_42592755_42593245_42593466_42593684_42593724_42595008_42595215_42595992_42596172_42596690_42596987_42601156
ENSMUSG00000025188.16_0	chr19	-	2724	20	FSM	ENSMUSG00000025188.16	ENSMUST00000162004.8	2847	20	28	95	9	-2	multi-exon	FALSE	canonical	3	80	junction_19	17.2102848848348	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTCAAGCCTGTCCCTG	NA	False	NA	-7	True	AATAAA	-15	NA	42768389	42743638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
ENSMUSG00000025188.16_11	chr19	-	2879	20	NIC	ENSMUSG00000025188.16	novel	2952	20	NA	NA	30	-2	combination_of_known_junctions	FALSE	canonical	3	15	junction_19	27.100714999103	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTCAAGCCTGTCCCTG	NA	False	NA	-7	True	AATAAA	-15	NA	42768368	42743638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768176
ENSMUSG00000025188.16_12	chr19	-	2742	20	NIC	ENSMUSG00000025188.16	novel	2952	20	NA	NA	18	-1	combination_of_known_junctions	FALSE	canonical	2	8	junction_12	28.8133740876661	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAAGCCTGTCCCTGGCC	NA	False	NA	-4	True	AATAAA	-18	NA	42768380	42743635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755124_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
ENSMUSG00000025188.16_17	chr19	-	2688	19	ISM	ENSMUSG00000025188.16	ENSMUST00000162004.8	2847	20	1331	95	0	-2	3prime_fragment	FALSE	canonical	3	94	junction_5	15.7405664478368	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTCAAGCCTGTCCCTG	407	False	NA	-7	True	AATAAA	-15	NA	42767086	42743638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992
ENSMUSG00000025189.10_1	chr19	+	4568	11	FSM	ENSMUSG00000025189.10	ENSMUST00000165311.3	5037	11	464	5	464	-5	multi-exon	FALSE	canonical	2	3	junction_6	3.04795013082563	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGACTAGCTGCTTTGCTT	NA	False	NA	NA	False	AATAAA	-39	NA	43429338	43485644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_43430457_43453559_43453704_43456679_43456821_43458047_43458218_43460287_43460388_43460815_43460864_43473283_43473448_43479859_43480044_43480202_43480353_43482148_43482251_43483397
ENSMUSG00000025189.10_2	chr19	+	2296	1	NIC	ENSMUSG00000025189.10	novel	2931	12	NA	NA	8	-34837	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACACCAGAAAACTTGCA	NA	False	NA	NA	False	AAGAAA	-16	NA	43428882	43431178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_43428900_43431200
ENSMUSG00000025189.10_4	chr19	+	1469	1	ISM	ENSMUSG00000025189.10	ENSMUST00000165311.3	5037	11	55250	56	2170	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACTCAATAAATTGTAAA	NA	False	NA	NA	False	AATAAA	-10	NA	43484124	43485593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_43484100_43485600
ENSMUSG00000025190.14_0	chr19	-	1966	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	82	10	-38	-10	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	1059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTGAAATGGAGTTTGT	8399	False	NA	-13	True	NA	NA	NA	43512962	43488200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
ENSMUSG00000025190.14_1	chr19	-	1601	7	ISM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	16611	8	-3198	-8	3prime_fragment	FALSE	canonical	3	761	junction_5	48.6746568783204	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAAATGGAGTTTGTGA	8156	False	NA	-11	True	NA	NA	NA	43496433	43488198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308
ENSMUSG00000025192.14_0	chr19	+	3011	13	FSM	ENSMUSG00000025192.14	ENSMUST00000081079.6	5911	13	144	2756	7	-2756	multi-exon	FALSE	canonical	2	4	junction_9	3.63623737154524	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTTTTTGTTTGTT	2783	False	NA	NA	False	AATAAA	-20	NA	43678254	43719380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_43678344_43678617_43678721_43679456_43679640_43692637_43692844_43693318_43693470_43700173_43700278_43704712_43704770_43705888_43706023_43710187_43710355_43713652_43713978_43715281_43715368_43716428_43716591_43718136
ENSMUSG00000025192.14_1	chr19	+	1993	9	FSM	ENSMUSG00000025192.14	ENSMUST00000144314.2	1829	9	-19	-145	12	145	multi-exon	FALSE	canonical	2	6	junction_1	3.11247489949718	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAATGCCATGTCATCA	2788	False	NA	NA	False	AATAAA	-42	NA	43678259	43711158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_43678344_43678617_43678721_43679456_43679640_43692637_43692844_43693318_43693470_43700173_43700278_43704712_43704770_43705888_43706023_43710187
ENSMUSG00000025193.15_0	chr19	+	1265	9	FSM	ENSMUSG00000025193.15	ENSMUST00000112047.10	1233	9	-38	6	-38	1	multi-exon	FALSE	canonical	3	18	junction_1	5.45435605731786	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGTTATAGTCTCAGGT	9236	False	NA	10	True	AATAAA	-13	NA	43741498	43757071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751311_43751446_43753398_43753427_43755639_43755746_43756613
ENSMUSG00000025193.15_1	chr19	+	1213	9	FSM	ENSMUSG00000025193.15	ENSMUST00000026199.14	1298	9	86	-1	-16	1	multi-exon	FALSE	canonical	3	9	junction_5	8.4400459121974	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGTTATAGTCTCAGGT	9258	False	NA	10	True	AATAAA	-13	NA	43741520	43757071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751341_43751446_43753398_43753427_43755639_43755746_43756613
ENSMUSG00000025193.15_4	chr19	+	1202	9	NNC	ENSMUSG00000025193.15	novel	1298	9	NA	NA	13	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.0616903873379	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGTTATAGTCTCAGGT	9185	False	NA	10	True	AATAAA	-13	NA	43741447	43757071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_43741576_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751341_43751446_43753398_43753427_43755639_43755746_43756613
ENSMUSG00000025194.6_0	chr19	+	1843	12	ISM	ENSMUSG00000025194.6	ENSMUST00000026208.6	8027	32	15822	27319	28	20	internal_fragment	FALSE	canonical	0	0	junction_2	0.616575453011388	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCATGACTCTGTCTTCT	3406	False	NA	NA	False	AGTAAA	-14	NA	43786452	43801860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_43786635_43786845_43786954_43787528_43787585_43788975_43789208_43792081_43792246_43793374_43793553_43795448_43795704_43797088_43797155_43798909_43799048_43799554_43799702_43800869_43800955_43801628
ENSMUSG00000025194.6_1	chr19	+	4595	29	ISM	ENSMUSG00000025194.6	ENSMUST00000026208.6	8027	32	15777	2982	-17	-2970	3prime_fragment	FALSE	canonical	0	0	junction_2	0.859372101108284	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATCAGGTACCTTAGAAA	3361	False	NA	NA	False	AATACA	-37	NA	43786407	43826197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_43786635_43786845_43786954_43787528_43787585_43788975_43789208_43792081_43792246_43793374_43793553_43795448_43795704_43797088_43797155_43798909_43799048_43799554_43799702_43800869_43800955_43801628_43801696_43803126_43803254_43805235_43805413_43806452_43806621_43807793_43807975_43810057_43810185_43810445_43810582_43811413_43811634_43811776_43811932_43814273_43814430_43815022_43815223_43816319_43816447_43818250_43818353_43818849_43818994_43820483_43820643_43822303_43822471_43825022_43825218_43825866
ENSMUSG00000025195.10_0	chr19	-	4785	14	FSM	ENSMUSG00000025195.10	ENSMUST00000212048.2	4186	14	342	-941	342	0	multi-exon	FALSE	canonical	3	36	junction_13	12.8730717519697	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGAGTGTGTTTCCTTC	999	False	NA	-6	True	AATAAA	-14	NA	43878788	43835260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43877748
ENSMUSG00000025195.10_13	chr19	-	3258	9	ISM	ENSMUSG00000025195.10	ENSMUST00000212592.2	3901	14	10791	0	10791	0	3prime_fragment	FALSE	canonical	3	52	junction_1	5.47151715705982	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGAGTGTGTTTCCTTC	NA	False	NA	-6	True	AATAAA	-14	NA	43857416	43835260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243
ENSMUSG00000025195.10_14	chr19	-	2660	5	ISM	ENSMUSG00000025195.10	ENSMUST00000212592.2	3901	14	24699	0	24699	0	3prime_fragment	TRUE	canonical	3	52	junction_1	5.31507290636732	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGAGTGTGTTTCCTTC	NA	False	NA	-6	True	AATAAA	-14	NA	43843508	43835260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235
ENSMUSG00000025195.10_18	chr19	-	6103	17	NIC	ENSMUSG00000025195.10	novel	5074	16	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_13	22.3025187759141	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGAGTGTGTTTCCTTC	NA	False	NA	-6	True	AATAAA	-14	NA	43928646	43835260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43889508_43891498_43899163_43899287_43900673_43900829_43928555
ENSMUSG00000025195.10_4	chr19	-	3854	14	FSM	ENSMUSG00000025195.10	ENSMUST00000212592.2	3901	14	47	0	47	0	multi-exon	FALSE	canonical	3	34	junction_13	13.2052526755398	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGAGTGTGTTTCCTTC	NA	False	NA	-6	True	AATAAA	-14	NA	43868160	43835260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43868051
ENSMUSG00000025195.10_7	chr19	-	5153	14	ISM	ENSMUSG00000025195.10	ENSMUST00000212032.2	5074	16	9915	-941	9915	0	3prime_fragment	FALSE	canonical	3	14	junction_13	17.0952777312935	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGAGTGTGTTTCCTTC	NA	False	NA	-6	True	AATAAA	-14	NA	43890916	43835260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43889508
ENSMUSG00000025196.5_1	chr19	-	1441	9	FSM	ENSMUSG00000025196.5	ENSMUST00000026210.5	1828	9	382	5	382	-5	multi-exon	FALSE	canonical	3	15	junction_8	10.3191266587827	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTGGTGCCACTTGCA	6244	False	NA	-2	True	ATTAAA	-17	NA	43974613	43944750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_43945076_43948424_43948544_43952169_43952270_43954613_43954754_43956891_43957004_43958440_43958624_43962371_43962528_43969241_43969439_43974504
ENSMUSG00000025196.5_2	chr19	-	1330	8	ISM	ENSMUSG00000025196.5	ENSMUST00000026210.5	1828	9	5559	5	5559	-5	3prime_fragment	FALSE	canonical	3	24	junction_2	8.50929863533453	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTGGTGCCACTTGCA	NA	False	NA	-2	True	ATTAAA	-17	NA	43969436	43944750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_43945076_43948424_43948544_43952169_43952270_43954613_43954754_43956891_43957004_43958440_43958624_43962371_43962528_43969241
ENSMUSG00000025198.17_0	chr19	-	3037	11	FSM	ENSMUSG00000025198.17	ENSMUST00000170801.8	3172	11	128	7	-3	-7	multi-exon	FALSE	canonical	3	157	junction_6	17.066048165876	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTGATTGTGTGTGTTC	NA	False	NA	-9	True	AATAAA	-12	NA	44057837	44023389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710
ENSMUSG00000025198.17_1	chr19	-	3100	12	FSM	ENSMUSG00000025198.17	ENSMUST00000112028.10	3136	12	29	7	0	-7	multi-exon	FALSE	canonical	3	111	junction_11	27.8217466521579	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTGATTGTGTGTGTTC	NA	False	NA	-9	True	AATAAA	-12	NA	44058195	44023389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058129
ENSMUSG00000025198.17_3	chr19	-	1350	1	ISM	ENSMUSG00000025198.17	ENSMUST00000170801.8	3172	11	33229	4	31386	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGATTGTGTGTGTTCTAT	4471	False	NA	-6	True	AATAAA	-15	NA	44024736	44023386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_44023400_44024700
ENSMUSG00000025198.17_5	chr19	-	3203	12	FSM	ENSMUSG00000025198.17	ENSMUST00000071698.13	3228	12	19	6	0	-6	multi-exon	TRUE	canonical	3	64	junction_11	39.5783562189201	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGATTGTGTGTGTTCT	NA	False	NA	-8	True	AATAAA	-13	NA	44058195	44023388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058027
ENSMUSG00000025199.17_2	chr19	-	3450	21	FSM	ENSMUSG00000025199.17	ENSMUST00000026217.11	3502	21	45	7	34	-6	multi-exon	FALSE	canonical	3	185	junction_2	31.5901883501824	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTATTTTGAATCTCTA	NA	False	NA	-8	True	ATTAAA	-8	NA	44095874	44061780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44062980_44063869_44063970_44065684_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
ENSMUSG00000025199.17_4	chr19	-	3431	21	FSM	ENSMUSG00000025199.17	ENSMUST00000119591.2	3481	21	44	6	36	-6	multi-exon	FALSE	canonical	3	113	junction_2	45.2515193115104	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTATTTTGAATCTCTA	NA	False	NA	-8	True	ATTAAA	-8	NA	44095872	44061780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44062980_44063869_44063970_44065701_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
ENSMUSG00000025200.8_0	chr19	-	2175	14	FSM	ENSMUSG00000025200.8	ENSMUST00000026218.7	3581	14	19	1387	4	-3	multi-exon	FALSE	canonical	3	133	junction_12	11.4813973542901	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGACAGATGTCTTATGTT	NA	False	NA	-6	True	AATAGA	-21	NA	44124296	44098462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850_44119953_44120524_44120604_44121438_44121524_44124204
ENSMUSG00000025200.8_10	chr19	-	1175	3	ISM	ENSMUSG00000025200.8	ENSMUST00000235288.2	1470	7	8249	10	-1122	0	3prime_fragment	FALSE	canonical	3	162	junction_2	0.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAAGGCTGACAGATGTC	4910	False	NA	-13	True	AATAGA	-14	NA	44102559	44098469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_44099100_44101387_44101486_44102112
ENSMUSG00000025200.8_12	chr19	-	2156	14	NIC	ENSMUSG00000025200.8	novel	3581	14	NA	NA	4	4	combination_of_known_junctions	FALSE	canonical	3	20	junction_12	38.4159730092643	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCTGACAGATGTCTTAT	NA	False	NA	-9	True	AATAGA	-18	NA	44124296	44098465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850_44119953_44120524_44120588_44121438_44121524_44124204
ENSMUSG00000025202.9_0	chr19	+	3021	5	ISM	ENSMUSG00000025202.9	ENSMUST00000026220.7	3489	6	12320	2	12320	-2	3prime_fragment	FALSE	canonical	3	12	junction_1	133.013157243936	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCATCTGGCTCCAGAGT	753	False	NA	NA	False	NA	NA	NA	44204027	44232453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_44204124_44222661_44222793_44224209_44224416_44226814_44227048_44230098
ENSMUSG00000025202.9_1	chr19	+	748	3	FSM	ENSMUSG00000025202.9	ENSMUST00000237324.2	655	3	-91	-2	-91	2	multi-exon	FALSE	canonical	3	31	junction_1	4	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGAAATTCTCCTGTTC	NA	False	NA	9	True	ATTAAA	-27	NA	44226162	44230459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_44226317_44226814_44227048_44230098
ENSMUSG00000025202.9_2	chr19	+	163	1	ISM	ENSMUSG00000025202.9	ENSMUST00000026220.7	3489	6	39228	1357	4682	641	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAAAAATGTTCTT	1305	False	NA	NA	False	NA	NA	NA	44230935	44231098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_44230900_44231100
ENSMUSG00000025203.7_2	chr19	+	5041	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	410	4	8	-4	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	6740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTCTCGTGGTGTTTT	1477	False	NA	18	True	AATAAA	-19	NA	44282522	44295299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
ENSMUSG00000025203.7_82	chr19	+	4594	5	ISM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	1348	5	946	-5	3prime_fragment	FALSE	canonical	3	2619	junction_4	98.1325634027768	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTCTCGTGGTGTTT	2415	False	NA	17	True	AATAAA	-18	NA	44283460	44295298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
ENSMUSG00000025203.7_97	chr19	+	2759	1	ISM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	10428	4	10026	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1445	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTCTCGTGGTGTTTT	NA	False	NA	18	True	AATAAA	-19	NA	44292540	44295299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_44292500_44295300
ENSMUSG00000025204.11_3	chr19	-	650	5	FSM	ENSMUSG00000025204.11	ENSMUST00000026222.11	680	5	18	12	1	1	multi-exon	FALSE	canonical	3	4404	junction_1	502.944517317765	1006	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCTCTGGTTTCTGTGTC	1992	False	NA	-19	True	AATAAA	-17	NA	44543861	44538690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543497_44543755
ENSMUSG00000025207.17_0	chr19	+	4362	15	FSM	ENSMUSG00000025207.17	ENSMUST00000026225.15	4548	15	183	3	-7	0	multi-exon	FALSE	canonical	1	6	junction_7	2.98037800643215	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTGAGTGTCTGCTT	NA	False	NA	1	True	AATAAA	-15	NA	44977722	44991833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_44977797_44980576_44981078_44981172_44981322_44981558_44981622_44984907_44985007_44985118_44985213_44985358_44985473_44985730_44985895_44985967_44986138_44986402_44986548_44986670_44986894_44987109_44987226_44987316_44987478_44987617_44987680_44989606
ENSMUSG00000025207.17_1	chr19	+	4256	16	NIC	ENSMUSG00000025207.17	novel	4552	16	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_15	3.47307100736829	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTGAGTGTCTGCTT	NA	False	NA	1	True	AATAAA	-15	NA	44977700	44991833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_44977797_44980576_44981078_44981172_44981322_44981558_44981622_44984907_44985007_44985118_44985213_44985358_44985473_44985730_44985895_44985967_44986138_44986402_44986548_44986670_44986894_44987109_44987226_44987316_44987478_44987617_44987680_44989606_44990658_44990785
ENSMUSG00000025207.17_8	chr19	+	3852	14	NIC	ENSMUSG00000025207.17	novel	4552	16	NA	NA	384	1	intron_retention	FALSE	canonical	2	3	junction_13	3.58497852237878	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTTGAGTGTCTGCTTG	NA	False	NA	2	True	AATAAA	-16	NA	44980958	44991834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_44981078_44981172_44981322_44981558_44981622_44984907_44985007_44985118_44985213_44985358_44985473_44985730_44986138_44986402_44986548_44986670_44986894_44987109_44987226_44987316_44987478_44987617_44987680_44989606_44990658_44990785
ENSMUSG00000025207.17_9	chr19	+	1908	1	ISM	ENSMUSG00000025207.17	ENSMUST00000026225.15	4548	15	12388	1	9353	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTGAGTGTCTGCTTGG	603	False	NA	3	True	AATAAA	-17	NA	44989927	44991835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_44989900_44991800
ENSMUSG00000025208.10_0	chr19	-	1347	2	FSM	ENSMUSG00000025208.10	ENSMUST00000235259.2	515	2	30	-862	30	-121	multi-exon	FALSE	canonical	3	515	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAAGCAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	44994829	44993388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44994609_44994702
ENSMUSG00000025208.10_2	chr19	-	778	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	26	594	4	389	multi-exon	FALSE	canonical	3	460	junction_1	27.5	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAAGAGTCTGGAGGCTG	NA	False	NA	-3	True	AAAACA	-2	NA	44994855	44993861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44994380_44994501_44994609_44994702
ENSMUSG00000025209.6_2	chr19	+	3540	5	FSM	ENSMUSG00000025209.6	ENSMUST00000026227.3	3488	5	-55	3	-55	-3	multi-exon	FALSE	canonical	3	97	junction_1	30.3593066455741	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTCTGTGCGTTTTTTC	2498	False	NA	23	True	AATGAA	-16	NA	44994941	45001198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_44996815_44997718_44997960_44998570_44998679_44998856_44998999_45000022
ENSMUSG00000025209.6_3	chr19	+	4444	4	ISM	ENSMUSG00000025209.6	ENSMUST00000236685.2	2195	5	840	3	-55	-3	3prime_fragment	FALSE	canonical	3	153	junction_1	12.2836838484589	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTCTGTGCGTTTTTTC	2498	False	NA	23	True	AATGAA	-16	NA	44994941	45001198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_44997960_44998570_44998679_44998856_44998999_45000022
ENSMUSG00000025212.18_13	chr19	+	2649	10	ISM	ENSMUSG00000025212.18	ENSMUST00000062213.13	2867	11	1431	0	1227	0	3prime_fragment	FALSE	canonical	3	75	junction_1	14.3681747081682	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTTCAGTTATTCC	NA	False	NA	7	True	AATAAA	-18	NA	45037543	45044821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_45037707_45038182_45038354_45038666_45038766_45039088_45039165_45039314_45039401_45040534_45040663_45040849_45040900_45042108_45042159_45042740_45042789_45043043
ENSMUSG00000025212.18_16	chr19	+	1568	1	ISM	ENSMUSG00000025212.18	ENSMUST00000111954.11	2867	10	7238	2	6936	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGATCTTCAGTTATTC	NA	False	NA	6	True	AATAAA	-17	NA	45043252	45044820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_45043300_45044800
ENSMUSG00000025212.18_2	chr19	+	2751	11	FSM	ENSMUSG00000025212.18	ENSMUST00000062213.13	2867	11	114	2	-16	-2	multi-exon	FALSE	canonical	3	75	junction_2	13.7767920794356	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTGATCTTCAGTTATT	NA	False	NA	5	True	AATAAA	-16	NA	45036226	45044819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_45036330_45037542_45037707_45038182_45038354_45038666_45038766_45039088_45039165_45039314_45039401_45040534_45040663_45040849_45040900_45042108_45042159_45042740_45042789_45043043
ENSMUSG00000025212.18_7	chr19	+	2893	11	NIC	ENSMUSG00000025212.18	novel	2867	11	NA	NA	-29	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	32.2248351431004	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTTCAGTTATTCC	NA	False	NA	7	True	AATAAA	-18	NA	45036083	45044821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_45036330_45037545_45037707_45038182_45038354_45038666_45038766_45039088_45039165_45039314_45039401_45040534_45040663_45040849_45040900_45042108_45042159_45042740_45042789_45043043
ENSMUSG00000025213.12_0	chr19	+	2501	5	FSM	ENSMUSG00000025213.12	ENSMUST00000026234.5	1380	5	-1150	29	-252	-29	multi-exon	FALSE	canonical	1	1	junction_1	1.6583123951777	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACCAATAAAAAAATATATAA	4705	False	NA	NA	False	NA	NA	NA	45063427	45067699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_45064676_45065102_45065653_45066734_45066896_45066999_45067148_45067305
ENSMUSG00000025216.10_1	chr19	-	2537	3	NNC	ENSMUSG00000025216.10	novel	2484	2	NA	NA	-1049	-7	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGAATGGACCGCGATCG	NA	False	NA	NA	False	AATAAA	-15	NA	45225300	45221129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_45222697_45223341_45224081_45225069
ENSMUSG00000025217.16_0	chr19	+	2242	15	FSM	ENSMUSG00000025217.16	ENSMUST00000065601.13	2978	15	16	720	10	0	multi-exon	FALSE	canonical	3	261	junction_1	116.411041625118	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTCTCTTGCTTTGCC	NA	False	NA	17	True	TATAAA	-19	NA	45352205	45517732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_45352326_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUSG00000025217.16_1	chr19	+	2143	14	FSM	ENSMUSG00000025217.16	ENSMUST00000111936.4	2064	14	-75	-4	1	0	multi-exon	FALSE	canonical	3	132	junction_1	132.758623339525	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTCTCTTGCTTTGCC	NA	False	NA	17	True	TATAAA	-19	NA	45352196	45517732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_45352326_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUSG00000025217.16_3	chr19	+	2166	15	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	20	0	combination_of_known_splicesites	FALSE	canonical	3	79	junction_2	163.999393353781	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTCTCTTGCTTTGCC	NA	False	NA	17	True	TATAAA	-19	NA	45352215	45517732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_45352326_45394983_45395026_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUSG00000025217.16_5	chr19	+	2173	14	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	92	junction_2	165.00869620261	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTCTCTTGCTTTGCC	NA	False	NA	17	True	TATAAA	-19	NA	45352196	45517732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_45352326_45411571_45411680_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUSG00000025217.16_7	chr19	+	2279	16	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	157	junction_2	153.826684580046	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTCTCTTGCTTTGCC	NA	False	NA	17	True	TATAAA	-19	NA	45352210	45517732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_45352326_45394983_45395026_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUSG00000025218.7_0	chr19	-	2457	9	NNC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	17	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	20.2113829314077	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTGCTGTCTGTGA	NA	False	NA	-1	True	AATAAA	-16	NA	45548953	45540716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_45541763_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
ENSMUSG00000025218.7_1	chr19	-	2303	9	FSM	ENSMUSG00000025218.7	ENSMUST00000026239.7	2324	9	17	4	17	-4	multi-exon	FALSE	canonical	3	33	junction_8	11.9973955507018	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTGCCTGCTGTCTGTG	NA	False	NA	-2	True	AATAAA	-15	NA	45548953	45540717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_45541610_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
ENSMUSG00000025218.7_10	chr19	-	2682	8	NIC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	-23	-3	intron_retention	FALSE	canonical	3	33	junction_7	11.0176111340908	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTGCTGTCTGTGA	NA	False	NA	-1	True	AATAAA	-16	NA	45548993	45540716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
ENSMUSG00000025218.7_2	chr19	-	518	1	ISM	ENSMUSG00000025218.7	ENSMUST00000026239.7	2324	9	7736	3	7736	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTGCTGTCTGTGA	NA	False	NA	-1	True	AATAAA	-16	NA	45541234	45540716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_45540700_45541200
ENSMUSG00000025218.7_20	chr19	-	3342	7	NIC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	15	-7	intron_retention	FALSE	canonical	3	33	junction_6	11.8988794990677	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAAATTGCCTGCTGTCT	NA	False	NA	-5	True	AATAAA	-12	NA	45548955	45540720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_45542117_45543529_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
ENSMUSG00000025218.7_5	chr19	-	2276	8	ISM	ENSMUSG00000025218.7	ENSMUST00000026239.7	2324	9	814	3	814	-3	3prime_fragment	FALSE	canonical	3	37	junction_1	9.87679200996777	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTGCTGTCTGTGA	NA	False	NA	-1	True	AATAAA	-16	NA	45548156	45540716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_45541610_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018
ENSMUSG00000025218.7_8	chr19	-	3011	8	NIC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	12	-3	intron_retention	FALSE	canonical	3	33	junction_7	12.7775312999988	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTGCTGTCTGTGA	NA	False	NA	-1	True	AATAAA	-16	NA	45548958	45540716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_45541610_45541947_45542117_45543529_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
ENSMUSG00000025220.9_0	chr19	-	5035	16	FSM	ENSMUSG00000025220.9	ENSMUST00000026243.5	5057	16	15	7	15	-3	multi-exon	FALSE	canonical	3	653	junction_7	84.8678973464054	1466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGAATGTGTGCTGTGCT	5491	False	NA	-19	True	AATAAA	-6	NA	45771975	45738704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45750623_45750710_45753888_45754064_45755832_45756447_45758489_45758649_45760120_45760406_45762100_45762200_45764486_45764659_45765325_45765457_45767025_45767124_45767470_45767523_45771370
ENSMUSG00000025220.9_12	chr19	-	3228	8	ISM	ENSMUSG00000025220.9	ENSMUST00000026243.5	5057	16	15753	4	4088	0	3prime_fragment	FALSE	canonical	3	653	junction_7	102.460345739118	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTGTGCTGTGCTGCT	NA	False	NA	-16	True	AATAAA	-9	NA	45756237	45738701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45750623_45750710_45753888_45754064_45755832
ENSMUSG00000025220.9_4	chr19	-	1620	1	ISM	ENSMUSG00000025220.9	ENSMUST00000026243.5	5057	16	31670	3	7411	1	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTGTGCTGTGCTGCTT	9249	False	NA	-15	True	AATAAA	-10	NA	45740320	45738700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_45738700_45740300
ENSMUSG00000025221.17_11	chr19	-	2374	8	NIC	ENSMUSG00000025221.17	novel	2395	10	NA	NA	1	-6	intron_retention	FALSE	canonical	3	6	junction_7	7.36234212955721	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCCGCTGTCTCTGCCT	NA	False	NA	-6	True	AATAAA	-15	NA	45785482	45780790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018_45784144_45784717_45784772_45785353
ENSMUSG00000025221.17_2	chr19	-	2564	6	NIC	ENSMUSG00000025221.17	novel	2113	8	NA	NA	-367	0	intron_retention	TRUE	canonical	3	19	junction_1	3.87814388593306	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTCTCTGCCTCTTTAT	NA	False	NA	0	True	AATAAA	-21	NA	45784510	45780784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018
ENSMUSG00000025221.17_3	chr19	-	2003	8	FSM	ENSMUSG00000025221.17	ENSMUST00000086993.11	1005	8	-1	-997	-1	-6	multi-exon	FALSE	canonical	3	6	junction_7	6.66394502268034	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCCGCTGTCTCTGCCT	NA	False	NA	-6	True	AATAAA	-15	NA	45800731	45780790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_45782157_45782439_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018_45784144_45800636
ENSMUSG00000025221.17_4	chr19	-	2274	7	ISM	ENSMUSG00000025221.17	ENSMUST00000239049.2	2113	8	7506	4	-364	-4	3prime_fragment	FALSE	canonical	3	16	junction_1	4.2687494916219	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCGCTGTCTCTGCCTCT	NA	False	NA	-4	True	AATAAA	-17	NA	45784507	45780788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_45782157_45782439_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018
ENSMUSG00000025223.16_0	chr19	-	2765	10	NIC	ENSMUSG00000025223.16	novel	3133	11	NA	NA	25	-9	intron_retention	TRUE	canonical	3	657	junction_1	53.8023359904074	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGTCACTCATG	6747	False	NA	-40	True	ATTAAA	-11	NA	46033624	46021041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
ENSMUSG00000025223.16_2	chr19	-	2092	11	FSM	ENSMUSG00000025223.16	ENSMUST00000185355.7	2088	11	7	-11	6	-11	multi-exon	FALSE	canonical	3	350	junction_1	132.738992010637	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAAAGTCACTCA	6728	False	NA	-42	True	ATTAAA	-9	NA	46033643	46021043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_46021781_46022470_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
ENSMUSG00000025223.16_3	chr19	-	2076	11	FSM	ENSMUSG00000025223.16	ENSMUST00000152946.8	2108	11	17	15	13	8	multi-exon	FALSE	canonical	3	192	junction_1	177.433255056655	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTAAAAAAAAAAGTCAC	6735	False	NA	-45	True	ATTAAA	-6	NA	46033636	46021046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_46021781_46022476_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
ENSMUSG00000025224.17_0	chr19	+	6415	40	FSM	ENSMUSG00000025224.17	ENSMUST00000026254.14	6450	40	32	3	-7	-2	multi-exon	FALSE	canonical	3	37	junction_33	16.0207377114128	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTCCTTCCCGCTGATT	9083	False	NA	16	True	AATAAA	-16	NA	46140979	46274946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46141232_46151958_46152065_46159095_46159163_46234527_46234660_46240552_46240672_46242425_46242535_46242995_46243057_46244091_46244147_46247542_46247691_46248011_46248236_46249151_46249318_46250059_46250272_46250872_46250972_46253217_46253413_46253616_46253807_46254025_46254167_46254463_46254553_46255641_46255845_46256431_46256556_46256829_46256956_46257217_46257301_46258183_46258421_46258696_46258791_46259112_46259290_46259993_46260059_46260145_46260270_46260424_46260497_46260613_46260709_46260939_46261094_46267648_46267875_46268350_46268512_46268615_46268863_46268976_46269183_46271473_46271625_46271758_46271890_46272060_46272163_46272443_46272558_46272688_46272870_46273143_46273273_46274098
ENSMUSG00000025224.17_1	chr19	+	6400	40	NIC	ENSMUSG00000025224.17	novel	6450	40	NA	NA	-7	-5	combination_of_known_junctions	FALSE	canonical	3	63	junction_11	14.1633654350608	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCATTTCCTTCCCGCTG	9083	False	NA	13	True	AATAAA	-13	NA	46140979	46274943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_46141232_46151958_46152065_46159095_46159163_46234527_46234660_46240552_46240672_46242425_46242535_46242995_46243057_46244091_46244147_46247542_46247691_46248011_46248236_46249151_46249318_46250059_46250272_46250872_46250972_46253217_46253413_46253616_46253807_46254025_46254167_46254463_46254553_46255641_46255845_46256431_46256556_46256829_46256956_46257217_46257301_46258183_46258421_46258696_46258791_46259112_46259290_46259993_46260059_46260145_46260270_46260424_46260497_46260613_46260709_46260939_46261094_46267648_46267875_46268350_46268512_46268615_46268863_46268976_46269171_46271473_46271625_46271758_46271890_46272060_46272163_46272443_46272558_46272688_46272870_46273143_46273273_46274098
ENSMUSG00000025224.17_38	chr19	+	2255	10	ISM	ENSMUSG00000025224.17	ENSMUST00000176992.8	5981	37	33824	5	39	-5	3prime_fragment	FALSE	canonical	3	81	junction_3	10.760008261046	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCATTTCCTTCCCGCTG	504	False	NA	13	True	AATAAA	-13	NA	46268350	46274943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46268512_46268615_46268863_46268976_46269171_46271473_46271625_46271758_46271890_46272060_46272163_46272443_46272558_46272688_46272870_46273143_46273273_46274098
ENSMUSG00000025225.16_1	chr19	+	2986	23	FSM	ENSMUSG00000025225.16	ENSMUST00000073116.13	2979	23	-7	0	-7	0	multi-exon	FALSE	canonical	3	47	junction_13	7.7085334275273	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAACCCCAATGTGCTG	NA	False	NA	23	True	AATAAA	-28	NA	46293175	46300461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46293260_46294368_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
ENSMUSG00000025225.16_16	chr19	+	1708	11	ISM	ENSMUSG00000025225.16	ENSMUST00000236820.2	2827	21	2870	-128	2747	0	3prime_fragment	FALSE	canonical	3	47	junction_1	8.63712915267567	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAACCCCAATGTGCTG	NA	False	NA	23	True	AATAAA	-28	NA	46297306	46300461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
ENSMUSG00000025225.16_7	chr19	+	3096	22	FSM	ENSMUSG00000025225.16	ENSMUST00000111881.4	3141	22	40	5	40	0	multi-exon	FALSE	canonical	3	47	junction_12	7.7415743094745	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAACCCCAATGTGCTG	NA	False	NA	23	True	AATAAA	-28	NA	46294174	46300461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
ENSMUSG00000025226.12_0	chr19	+	1231	5	NNC	ENSMUSG00000025226.12	novel	1243	5	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	10.9772492000501	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCGTGGTGCATAGGG	6315	False	NA	6	True	AATAAA	-15	NA	46316624	46318882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_46316730_46316841_46316966_46317113_46317268_46317526_46318033_46318540
ENSMUSG00000025226.12_1	chr19	+	1339	4	FSM	ENSMUSG00000025226.12	ENSMUST00000026256.9	1348	4	3	6	0	-5	multi-exon	FALSE	canonical	3	21	junction_3	4.08248290463863	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTCTTGCGTGGTGCATA	6316	False	NA	3	True	AATAAA	-12	NA	46316625	46318879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46316966_46317113_46317268_46317526_46318033_46318540
ENSMUSG00000025226.12_3	chr19	+	1112	3	ISM	ENSMUSG00000025226.12	ENSMUST00000177667.2	1243	5	377	3	377	-3	3prime_fragment	FALSE	canonical	3	21	junction_2	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGCGTGGTGCATAGG	6693	False	NA	5	True	AATAAA	-14	NA	46317002	46318881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46317268_46317526_46318033_46318540
ENSMUSG00000025227.15_1	chr19	+	2425	10	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	82.6896622735489	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4242	False	NA	13	True	AGTAAA	-13	NA	46345362	46363691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_46345424_46350784_46350976_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
ENSMUSG00000025227.15_2	chr19	+	2234	9	FSM	ENSMUSG00000025227.15	ENSMUST00000086969.13	2278	9	44	0	-11	0	multi-exon	FALSE	canonical	3	169	junction_1	30.2561977122044	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4242	False	NA	13	True	AGTAAA	-13	NA	46345362	46363691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
ENSMUSG00000025227.15_4	chr19	+	2062	8	FSM	ENSMUSG00000025227.15	ENSMUST00000142994.8	2051	8	-11	0	-11	0	multi-exon	FALSE	canonical	3	15	junction_6	80.873294701764	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4242	False	NA	13	True	AGTAAA	-13	NA	46345362	46363691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360620_46360815_46362884
ENSMUSG00000025228.6_0	chr19	-	2742	11	FSM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	10	5	1	-2	multi-exon	FALSE	canonical	3	273	junction_3	19.222122671547	527	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACATCAGTCTGACCTCTT	NA	False	NA	-7	True	AATAAA	-14	NA	46384176	46365254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
ENSMUSG00000025229.16_1	chr19	-	1516	4	FSM	ENSMUSG00000025229.16	ENSMUST00000026259.16	1380	4	-139	3	-139	-3	multi-exon	FALSE	canonical	3	5	junction_1	2.62466929133727	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCCTGATGATTCAGAC	NA	False	NA	NA	False	AATAAA	-16	NA	46136904	46124126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_46125045_46125421_46125625_46125803_46125934_46136639
ENSMUSG00000025231.18_0	chr19	+	4465	12	FSM	ENSMUSG00000025231.18	ENSMUST00000111867.9	1747	12	29	-2747	29	-9	multi-exon	FALSE	canonical	3	32	junction_6	20.0218888484042	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGTGCCTGAGTTGTGTG	NA	False	NA	10	True	ATTAAA	-10	NA	46385385	46477234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441597_46441755_46443173_46443286_46462010_46462146_46463946_46464086_46472038_46472108_46474293
ENSMUSG00000025231.18_1	chr19	+	1788	7	ISM	ENSMUSG00000025231.18	ENSMUST00000118440.3	2681	10	-80	22918	28	-7	5prime_fragment	FALSE	canonical	3	63	junction_6	13.5123400391395	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATACCTGACTTGGT	NA	False	NA	NA	False	AATAAA	-16	NA	46385384	46442475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600
ENSMUSG00000025231.18_12	chr19	+	1978	1	ISM	ENSMUSG00000025231.18	ENSMUST00000039922.13	4522	12	89922	9	3721	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGTGCCTGAGTTGTGTG	NA	False	NA	10	True	ATTAAA	-10	NA	46475256	46477234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46475300_46477200
ENSMUSG00000025231.18_2	chr19	+	4461	12	FSM	ENSMUSG00000025231.18	ENSMUST00000039922.13	4522	12	52	9	30	-9	multi-exon	FALSE	canonical	3	63	junction_6	14.4473967456865	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGTGCCTGAGTTGTGTG	NA	False	NA	10	True	ATTAAA	-10	NA	46385386	46477234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600_46441755_46443173_46443286_46462010_46462146_46463946_46464086_46472038_46472108_46474293
ENSMUSG00000025231.18_4	chr19	+	1811	7	ISM	ENSMUSG00000025231.18	ENSMUST00000111867.9	1747	12	8	32012	8	-7	5prime_fragment	FALSE	canonical	3	32	junction_6	24.709422404329	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATACCTGACTTGGT	NA	False	NA	NA	False	AATAAA	-16	NA	46385364	46442475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441597
ENSMUSG00000025231.18_5	chr19	+	2749	10	ISM	ENSMUSG00000025231.18	ENSMUST00000111867.9	1747	12	20	9117	20	-23	5prime_fragment	FALSE	canonical	3	32	junction_6	20.7691604233623	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTCCCACTTGGTAACG	NA	False	NA	NA	False	TATAAA	-9	NA	46385376	46465370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441597_46441755_46443173_46443286_46462010_46462146_46463946
ENSMUSG00000025232.9_0	chr9	+	1835	14	FSM	ENSMUSG00000025232.9	ENSMUST00000026262.8	1996	14	158	3	158	-3	multi-exon	FALSE	canonical	3	1100	junction_8	84.5408762866438	1527	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGAGTTTGGGTTGCTTG	NA	False	NA	29	True	AATAAA	-21	NA	59446980	59472389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
ENSMUSG00000025234.12_0	chr9	-	2556	1	ISM	ENSMUSG00000025234.12	ENSMUST00000171975.8	6971	14	93949	1852	13129	-1852	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCATTAGTTACTTATGT	NA	False	NA	-9	True	AATAAA	-19	NA	59299948	59297392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_59297400_59299900
ENSMUSG00000025234.12_1	chr9	-	5149	14	FSM	ENSMUSG00000025234.12	ENSMUST00000171975.8	6971	14	-47	1869	-43	-1869	multi-exon	TRUE	canonical	3	295	junction_6	43.7741649239926	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTTTATTTTGTTATT	NA	False	NA	-26	True	AATAAA	-2	NA	59393944	59297409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_59300662_59302160_59302274_59303633_59303895_59310650_59310709_59313007_59313139_59315158_59315231_59315657_59315701_59319707_59319815_59322052_59322120_59333405_59333462_59333896_59333990_59344053_59344199_59361684_59361753_59393261
ENSMUSG00000025234.12_6	chr9	-	4747	13	NIC	ENSMUSG00000025234.12	novel	6971	14	NA	NA	-49	-2209	combination_of_known_splicesites	FALSE	canonical	3	22	junction_12	108.59593173268	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACACACAAATAGATCCAA	NA	False	NA	NA	False	AATAAA	-25	NA	59393950	59297749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_59300662_59302160_59302274_59303633_59303895_59310650_59310709_59313007_59313139_59315158_59315231_59315657_59315701_59319707_59319815_59322052_59322120_59333405_59333462_59333896_59333990_59344053_59344199_59393261
ENSMUSG00000025235.9_0	chr9	-	2444	16	FSM	ENSMUSG00000025235.9	ENSMUST00000026265.8	2518	16	62	12	3	-12	multi-exon	FALSE	canonical	3	108	junction_2	13.5581054068119	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAAACTATGATC	NA	False	NA	-30	True	ATTAAA	-9	NA	59260729	59229284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_59230266_59230670_59230873_59231319_59231462_59232072_59232143_59234469_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082_59253135_59260692
ENSMUSG00000025235.9_20	chr9	-	167	1	ISM	ENSMUSG00000025235.9	ENSMUST00000214225.2	3757	2	11118	30	11108	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAGTGTATAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	59249614	59249447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_59249400_59249600
ENSMUSG00000025235.9_7	chr9	-	2408	15	ISM	ENSMUSG00000025235.9	ENSMUST00000026265.8	2518	16	7656	12	7587	-12	3prime_fragment	TRUE	canonical	3	108	junction_2	14.0336694257425	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAAACTATGATC	NA	False	NA	-30	True	ATTAAA	-9	NA	59253135	59229284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_59230266_59230670_59230873_59231319_59231462_59232072_59232143_59234469_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082
ENSMUSG00000025236.12_0	chr9	+	2443	7	FSM	ENSMUSG00000025236.12	ENSMUST00000026266.9	2464	7	21	0	10	0	multi-exon	FALSE	canonical	3	314	junction_6	118.522032644662	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCCTAAGTCTAATTGA	NA	False	NA	15	True	ATTAAA	-16	NA	59198875	59223479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59220322_59220520_59221035_59221135_59222016
ENSMUSG00000025236.12_12	chr9	+	5142	6	NIC	ENSMUSG00000025236.12	novel	2484	7	NA	NA	5	0	intron_retention	FALSE	canonical	3	305	junction_5	131.862655820365	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCCTAAGTCTAATTGA	NA	False	NA	15	True	ATTAAA	-16	NA	59198870	59223479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59220520_59221035_59221135_59222013
ENSMUSG00000025236.12_17	chr9	+	2236	6	NIC	ENSMUSG00000025236.12	novel	2484	7	NA	NA	23	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_4	227.97315631451	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCCTAAGTCTAATTGA	NA	False	NA	15	True	ATTAAA	-16	NA	59198888	59223479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59221035_59221135_59222013
ENSMUSG00000025236.12_2	chr9	+	2446	7	FSM	ENSMUSG00000025236.12	ENSMUST00000217570.2	2484	7	35	3	10	0	multi-exon	FALSE	canonical	3	305	junction_6	121.65205391699	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCCTAAGTCTAATTGA	NA	False	NA	15	True	ATTAAA	-16	NA	59198875	59223479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59220322_59220520_59221035_59221135_59222013
ENSMUSG00000025236.12_24	chr9	+	2243	6	NIC	ENSMUSG00000025236.12	novel	2464	7	NA	NA	13	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_4	226.796825374607	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCCTAAGTCTAATTGA	NA	False	NA	15	True	ATTAAA	-16	NA	59198878	59223479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59221035_59221135_59222016
ENSMUSG00000025236.12_4	chr9	+	5141	6	FSM	ENSMUSG00000025236.12	ENSMUST00000214361.2	5148	6	4	3	4	1	multi-exon	FALSE	canonical	3	314	junction_5	128.284059804794	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCCTAAGTCTAATTGAT	NA	False	NA	16	True	ATTAAA	-17	NA	59198869	59223480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59220520_59221035_59221135_59222016
ENSMUSG00000025236.12_57	chr9	+	1306	1	ISM	ENSMUSG00000025236.12	ENSMUST00000217570.2	2484	7	23333	3	3243	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCCTAAGTCTAATTGA	NA	False	NA	15	True	ATTAAA	-16	NA	59222173	59223479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_59222200_59223500
ENSMUSG00000025237.17_0	chr9	+	2561	22	NIC	ENSMUSG00000025237.17	novel	2709	24	NA	NA	-20	-7	combination_of_known_junctions	FALSE	canonical	3	4	junction_18	14.7021833416448	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGAAGGTGCTGTGGA	NA	False	NA	4	True	NA	NA	NA	59524546	59557543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ENSMUSG00000025237.17_2	chr9	+	2408	22	NIC	ENSMUSG00000025237.17	novel	2709	24	NA	NA	-28	-1	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	13.3884913519139	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTGCTGTGGACTGGAT	NA	False	NA	10	True	AATAAA	-4	NA	59524538	59557549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_59524692_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ENSMUSG00000025237.17_22	chr9	+	5895	4	ISM	ENSMUSG00000025237.17	ENSMUST00000214956.2	514	5	5889	-142	-4677	-1	3prime_fragment	FALSE	canonical	3	52	junction_2	6.59966329107444	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGATATGATCACTGTGG	5971	False	NA	23	True	AATAAA	-17	NA	59550802	59557562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_59556193_59556572_59556637_59556801_59556887_59557206
ENSMUSG00000025237.17_3	chr9	+	2572	23	NIC	ENSMUSG00000025237.17	novel	2709	24	NA	NA	-16	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	12.3533546820621	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGATATGATCACTGTGG	NA	False	NA	23	True	AATAAA	-17	NA	59524627	59557562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ENSMUSG00000025237.17_39	chr9	+	2538	24	FSM	ENSMUSG00000025237.17	ENSMUST00000050483.15	2631	24	72	21	-3	-19	multi-exon	FALSE	canonical	0	0	junction_10	16.9215916701203	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAACAATAAAATGGA	NA	False	NA	-8	True	NA	NA	NA	59524640	59557531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538053_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59549023_59549094_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ENSMUSG00000025237.17_4	chr9	+	2720	24	FSM	ENSMUSG00000025237.17	ENSMUST00000026267.16	2709	24	-18	7	-18	-2	multi-exon	FALSE	canonical	3	6	junction_19	14.9962818328102	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGATATGATCACTGTG	NA	False	NA	22	True	AATAAA	-16	NA	59524548	59557561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59549023_59549094_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ENSMUSG00000025237.17_43	chr9	+	2361	22	NIC	ENSMUSG00000025237.17	novel	2484	23	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	15.8625044560765	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGCTGTGGACTGGATA	NA	False	NA	11	True	AATAAA	-5	NA	59524526	59557550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_59524692_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538053_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ENSMUSG00000025237.17_8	chr9	+	2487	23	FSM	ENSMUSG00000025237.17	ENSMUST00000216351.2	2484	23	-3	0	-3	0	multi-exon	FALSE	canonical	0	0	junction_10	14.9016056597828	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGCTGTGGACTGGATA	NA	False	NA	11	True	AATAAA	-5	NA	59524640	59557550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538053_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ENSMUSG00000025237.17_9	chr9	+	2473	22	NIC	ENSMUSG00000025237.17	novel	2484	23	NA	NA	6	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	16.9245357188034	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGAAGGTGCTGTGGA	NA	False	NA	4	True	NA	NA	NA	59524574	59557543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538053_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59556112_59556193_59556572_59556637_59556801_59556887_59557206
ENSMUSG00000025239.4_0	chr9	+	4845	8	FSM	ENSMUSG00000025239.4	ENSMUST00000026269.4	4848	8	-1	4	-1	-4	multi-exon	FALSE	canonical	3	33	junction_2	3.69776545872708	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCCCCAAGACTGTCTT	NA	False	NA	3	True	AATAAA	-19	NA	123307769	123350613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_123309687_123329195_123329298_123339572_123339641_123340280_123340344_123345839_123345971_123346427_123346480_123347160_123347230_123348170
ENSMUSG00000025239.4_3	chr9	+	1976	1	ISM	ENSMUSG00000025239.4	ENSMUST00000026269.4	4848	8	40867	4	1834	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCCCCAAGACTGTCTT	NA	False	NA	3	True	AATAAA	-19	NA	123348637	123350613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_123348600_123350600
ENSMUSG00000025240.11_1	chr9	+	3519	20	FSM	ENSMUSG00000025240.11	ENSMUST00000026270.9	3558	20	37	2	37	0	multi-exon	FALSE	canonical	3	209	junction_14	24.7475900502736	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCGCTGTTGGTACTGTTT	NA	False	NA	17	True	AATAAA	-18	NA	123358860	123421663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_123358987_123371408_123371507_123376048_123376124_123377926_123378055_123381732_123381883_123388289_123388350_123389630_123389665_123395455_123395558_123397988_123398075_123399013_123399101_123399561_123399631_123406041_123406122_123408013_123408113_123411312_123411452_123414151_123414222_123414349_123414423_123415408_123415503_123415626_123415720_123416609_123416668_123419865
ENSMUSG00000025240.11_32	chr9	+	1120	1	ISM	ENSMUSG00000025240.11	ENSMUST00000026270.9	3558	20	61719	3	4990	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCGCTGTTGGTACTGTT	NA	False	NA	16	True	AATAAA	-17	NA	123420542	123421662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_123420500_123421700
ENSMUSG00000025241.17_1	chr9	-	7428	19	NNC	ENSMUSG00000025241.17	novel	7692	18	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.37638878602347	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGAGTAGCATTGTCTT	9337	False	NA	-7	True	AATAAA	-15	NA	123680937	123618574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_123620862_123621098_123621815_123623789_123623900_123626581_123626793_123630286_123630383_123648111_123648257_123651382_123651595_123652242_123652393_123654570_123654739_123655610_123655730_123656149_123656243_123657240_123659545_123660351_123660443_123662162_123662307_123663857_123663965_123667936_123668063_123669606_123669714_123672523_123672674_123680845
ENSMUSG00000025241.17_45	chr9	-	1604	1	NIC	ENSMUSG00000091661.3	novel	2371	3	NA	NA	-174	-17325	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGAGTAGCATTGTCTT	NA	False	NA	-7	True	AATAAA	-15	NA	123620178	123618574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_123618600_123620200
ENSMUSG00000025241.17_53	chr9	-	4601	18	FSM	ENSMUSG00000025241.17	ENSMUST00000167595.9	7692	18	14	3077	1	-3077	multi-exon	FALSE	canonical	3	23	junction_5	6.23584903191129	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTCATCCACAAAATTTTAA	9324	False	NA	NA	False	ATTAAA	-14	NA	123680950	123621651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_123621815_123623789_123623900_123626581_123626793_123630286_123630383_123648111_123648257_123651382_123651595_123652242_123652393_123654570_123654739_123655610_123655730_123656149_123656243_123657240_123659545_123660351_123660443_123662162_123662307_123663857_123663965_123667936_123668063_123669606_123669714_123672523_123672674_123680845
ENSMUSG00000025245.15_1	chr9	-	3421	10	FSM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	63	586	-9	-586	multi-exon	FALSE	canonical	3	87	junction_9	8.45905169363301	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATACATTAGATTATAAAA	NA	False	NA	NA	False	ATTAAA	-13	NA	123546627	123526662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123544364_123544490_123546590
ENSMUSG00000025245.15_2	chr9	-	1554	1	ISM	ENSMUSG00000025245.15	ENSMUST00000165754.8	6541	9	18507	3149	9051	-553	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCTCTGGTTATGCATAA	1408	False	NA	NA	False	TATAAA	-15	NA	123528183	123526629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_123526600_123528200
ENSMUSG00000025245.15_5	chr9	-	1328	9	ISM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	2200	2643	2103	398	3prime_fragment	FALSE	canonical	3	93	junction_4	7.36439916082772	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTAATTTATCTAATC	NA	False	NA	0	True	AATAAA	-18	NA	123544490	123528719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123544364
ENSMUSG00000025246.14_4	chrX	+	5223	16	FSM	ENSMUSG00000025246.14	ENSMUST00000088217.12	5234	16	7	4	7	-4	multi-exon	TRUE	canonical	3	377	junction_1	40.4669412401448	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGAGAACATAGTGACTG	NA	False	NA	8	True	AATAAA	-16	NA	76554625	76706585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_76554876_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
ENSMUSG00000025246.14_48	chrX	+	2347	1	ISM	ENSMUSG00000025246.14	ENSMUST00000088217.12	5234	16	149623	1	149422	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAACATAGTGACTGTGT	NA	False	NA	11	True	AATAAA	-19	NA	76704241	76706588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_76704200_76706600
ENSMUSG00000025246.14_8	chrX	+	5281	17	NIC	ENSMUSG00000025246.14	novel	5234	16	NA	NA	15	-4	combination_of_known_junctions	FALSE	canonical	3	50	junction_1	145.192921228964	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGAGAACATAGTGACTG	NA	False	NA	8	True	AATAAA	-16	NA	76554633	76706585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_76554876_76628399_76628466_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
ENSMUSG00000025257.6_0	chrX	-	1494	8	FSM	ENSMUSG00000025257.6	ENSMUST00000026288.5	1508	8	12	2	12	-2	multi-exon	FALSE	canonical	3	80	junction_7	14.6816559150582	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGTGTGTCGTAAGAG	NA	False	NA	-4	True	AATAAA	-15	NA	150799279	150787579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799158
ENSMUSG00000025257.6_3	chrX	-	1531	8	NIC	ENSMUSG00000025257.6	novel	1508	8	NA	NA	12	-4	combination_of_known_splicesites	FALSE	canonical	3	12	junction_7	33.0126753640761	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACTGTGTGTCGTAAG	NA	False	NA	-6	True	AATAAA	-13	NA	150799279	150787581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799119
ENSMUSG00000025257.6_6	chrX	-	1858	7	NIC	ENSMUSG00000025257.6	novel	1508	8	NA	NA	44	-6	intron_retention	FALSE	canonical	3	80	junction_6	15.7126983325236	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCAACTGTGTGTCGTA	NA	False	NA	-8	True	AATAAA	-11	NA	150799222	150787583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_150787807_150787914_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799158
ENSMUSG00000025260.11_0	chrX	+	902	6	FSM	ENSMUSG00000025260.11	ENSMUST00000026289.10	962	6	57	3	57	-3	multi-exon	FALSE	canonical	3	1359	junction_1	187.651165730459	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTGTGTGCAGTCTTGT	NA	False	NA	13	True	AATAAA	-13	NA	150784897	150787435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786648_150786778_150786857_150786967_150787134
ENSMUSG00000025260.11_11	chrX	+	827	5	FSM	ENSMUSG00000025260.11	ENSMUST00000151200.8	1001	5	170	4	170	-4	multi-exon	FALSE	canonical	3	1649	junction_4	99.7180399927716	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTGTGTGCAGTCTTG	NA	False	NA	12	True	AATAAA	-12	NA	150785314	150787434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_150785439_150786356_150786522_150786648_150786778_150786857_150786967_150787134
ENSMUSG00000025261.19_154	chrX	+	5289	24	ISM	ENSMUSG00000025261.19	ENSMUST00000112622.8	14168	81	79038	533	5441	-533	3prime_fragment	FALSE	canonical	3	293	junction_3	112.876130310845	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTCACTTTTCACAACG	NA	False	NA	23	True	AATAAA	-12	NA	150697281	150717880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150697430_150698587_150698844_150699036_150699168_150699821_150700037_150700114_150700404_150700546_150700650_150701376_150701924_150702571_150703182_150704041_150704158_150704257_150704415_150705327_150705461_150705691_150705895_150706474_150706603_150707657_150707758_150710626_150710786_150711148_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
ENSMUSG00000025261.19_172	chrX	+	4410	20	ISM	ENSMUSG00000025261.19	ENSMUST00000112622.8	14168	81	82000	533	-4034	-533	3prime_fragment	FALSE	canonical	3	344	junction_9	98.2875818883678	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTCACTTTTCACAACG	NA	False	NA	23	True	AATAAA	-12	NA	150700243	150717880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150700404_150700546_150700650_150701376_150701924_150702571_150703182_150704041_150704158_150704257_150704415_150705327_150705461_150705691_150705895_150706474_150706603_150707657_150707758_150710626_150710786_150711148_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
ENSMUSG00000025261.19_177	chrX	+	3859	18	ISM	ENSMUSG00000025261.19	ENSMUST00000112622.8	14168	81	83421	533	-2613	-533	3prime_fragment	FALSE	canonical	3	344	junction_7	92.6057237388929	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTCACTTTTCACAACG	NA	False	NA	23	True	AATAAA	-12	NA	150701664	150717880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150701924_150702571_150703182_150704041_150704158_150704257_150704415_150705327_150705461_150705691_150705895_150706474_150706603_150707657_150707758_150710626_150710786_150711148_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
ENSMUSG00000025261.19_179	chrX	+	3446	17	ISM	ENSMUSG00000025261.19	ENSMUST00000112622.8	14168	81	84482	533	-1552	-533	3prime_fragment	FALSE	canonical	3	344	junction_6	88.4742194088199	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTCACTTTTCACAACG	NA	False	NA	23	True	AATAAA	-12	NA	150702725	150717880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150703182_150704041_150704158_150704257_150704415_150705327_150705461_150705691_150705895_150706474_150706603_150707657_150707758_150710626_150710786_150711148_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
ENSMUSG00000025261.19_201	chrX	+	1450	6	ISM	ENSMUSG00000025261.19	ENSMUST00000112622.8	14168	81	94854	533	5844	-533	3prime_fragment	FALSE	canonical	3	567	junction_3	37.6063824370279	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTCACTTTTCACAACG	NA	False	NA	23	True	AATAAA	-12	NA	150713097	150717880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
ENSMUSG00000025262.9_0	chrX	+	1152	1	NIC	ENSMUSG00000025262.9	novel	5463	16	NA	NA	1	-126515	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACCTTTGTTCTATAATT	NA	False	NA	14	True	AATAAA	-15	NA	150127171	150128323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_150127200_150128300
ENSMUSG00000025262.9_1	chrX	+	7702	16	FSM	ENSMUSG00000025262.9	ENSMUST00000073364.6	5463	16	42	-2281	42	2281	multi-exon	FALSE	canonical	2	7	junction_7	3.8262252939418	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATGCAAAATGATTTT	NA	False	NA	-5	True	AATAAA	-19	NA	150127212	150257119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_150127933_150159743_150159991_150164906_150164990_150182670_150182800_150211912_150212013_150212832_150212910_150213386_150213665_150214465_150214740_150215597_150215770_150219140_150219391_150240717_150240833_150246964_150247175_150248278_150248481_150250295_150250435_150250794_150250853_150252471
ENSMUSG00000025264.13_0	chrX	-	1378	5	FSM	ENSMUSG00000025264.13	ENSMUST00000112683.9	3796	5	25	2393	5	-6	multi-exon	FALSE	canonical	3	302	junction_1	26.3201443765037	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACAGTATCCATTGTC	NA	False	NA	-9	True	AATAAA	-15	NA	149879514	149872482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879160_149879252_149879424
ENSMUSG00000025264.13_1	chrX	-	1287	4	FSM	ENSMUSG00000025264.13	ENSMUST00000166010.2	1318	4	25	6	5	-6	multi-exon	FALSE	canonical	3	44	junction_3	140.42158745087	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACAGTATCCATTGTC	NA	False	NA	-9	True	AATAAA	-15	NA	149879514	149872482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879424
ENSMUSG00000025264.13_3	chrX	-	1389	5	FSM	ENSMUSG00000025264.13	ENSMUST00000026295.10	3804	5	23	2392	3	-6	multi-exon	FALSE	canonical	3	72	junction_1	125.415310070182	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACAGTATCCATTGTC	NA	False	NA	-9	True	AATAAA	-15	NA	149879516	149872482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149873411_149873591_149873778_149874671_149874764_149879160_149879252_149879424
ENSMUSG00000025264.13_5	chrX	-	644	1	ISM	ENSMUSG00000025264.13	ENSMUST00000112683.9	3796	5	6413	2393	6393	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACAGTATCCATTGTC	NA	False	NA	-9	True	AATAAA	-15	NA	149873126	149872482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_149872500_149873100
ENSMUSG00000025265.15_0	chrX	+	4241	18	FSM	ENSMUSG00000025265.15	ENSMUST00000026296.8	4001	18	-247	7	-247	-7	multi-exon	FALSE	canonical	3	331	junction_3	37.9662935558211	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTAACTTTCAGAGCACT	NA	False	NA	13	True	AATACA	-16	NA	149829918	149872510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_149830978_149849176_149849351_149849705_149849884_149850008_149850448_149851872_149851963_149852637_149852787_149855168_149855326_149855429_149855569_149861954_149862014_149862153_149862301_149862874_149862968_149863112_149863193_149868626_149868658_149869109_149869212_149869515_149869642_149869815_149869978_149870963_149871108_149871598
ENSMUSG00000025265.15_45	chrX	+	2594	15	ISM	ENSMUSG00000025265.15	ENSMUST00000026296.8	4001	18	20083	3	-130	-3	3prime_fragment	FALSE	canonical	3	362	junction_3	32.3366380946645	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTCAGAGCACTGCTA	NA	False	NA	17	True	AATACA	-20	NA	149850248	149872514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_149850448_149851872_149851963_149852637_149852787_149855168_149855326_149855429_149855569_149861954_149862014_149862153_149862301_149862874_149862968_149863112_149863193_149868626_149868658_149869109_149869212_149869515_149869642_149869815_149869978_149870963_149871108_149871598
ENSMUSG00000025266.12_28	chrX	-	2043	1	ISM	ENSMUSG00000025266.12	ENSMUST00000112691.9	4869	16	32132	7	8782	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCCTTGTGTGAGACT	NA	False	NA	-23	True	NA	NA	NA	149768186	149766143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_149766100_149768200
ENSMUSG00000025266.12_3	chrX	-	4804	16	FSM	ENSMUSG00000025266.12	ENSMUST00000112691.9	4869	16	58	7	58	-7	multi-exon	FALSE	canonical	3	473	junction_8	38.4461528201024	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCCTTGTGTGAGACT	NA	False	NA	-23	True	NA	NA	NA	149800260	149766143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
ENSMUSG00000025268.16_0	chrX	-	2071	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112699.9	2183	13	59	53	-5	1	multi-exon	FALSE	canonical	3	26	junction_12	47.4332864839309	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTATTGCCATTTTTGT	NA	False	NA	-2	True	NA	NA	NA	149597282	149589418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149597224
ENSMUSG00000025268.16_1	chrX	-	2085	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	21	1	21	-1	multi-exon	FALSE	canonical	3	63	junction_12	38.0929965858409	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTATTGCCATTTTTGTT	NA	False	NA	-1	True	NA	NA	NA	149596682	149589417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149596611
ENSMUSG00000025268.16_2	chrX	-	2220	12	ISM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	763	2	14	1	3prime_fragment	FALSE	canonical	3	154	junction_9	18.0545546095372	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTATTGCCATTTTTGT	NA	False	NA	-2	True	NA	NA	NA	149595940	149589418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
ENSMUSG00000025268.16_3	chrX	-	1879	11	ISM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	1461	1	215	-1	3prime_fragment	FALSE	canonical	3	154	junction_9	18.7573985403094	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTATTGCCATTTTTGTT	NA	False	NA	-1	True	NA	NA	NA	149595242	149589417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818
ENSMUSG00000025268.16_5	chrX	-	2148	13	NIC	ENSMUSG00000025268.16	novel	2183	13	NA	NA	4	-1	intron_retention	FALSE	canonical	3	35	junction_12	45.1259810604342	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTATTGCCATTTTTGTT	NA	False	NA	-1	True	NA	NA	NA	149595950	149589417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149595816
ENSMUSG00000025269.17_0	chrX	-	3294	6	ISM	ENSMUSG00000025269.17	ENSMUST00000112725.8	3613	7	1714	88	19	-88	3prime_fragment	FALSE	canonical	3	13	junction_1	30.3539124331609	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAGGAAGACTTTCTATA	NA	False	NA	NA	False	AATAAA	-10	NA	149371126	149302602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_149305207_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918
ENSMUSG00000025269.17_4	chrX	-	1872	6	FSM	ENSMUSG00000025269.17	ENSMUST00000026303.16	1884	6	9	3	9	-3	multi-exon	FALSE	canonical	3	78	junction_1	8.28009661779378	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGACCATGTTGAGTGGA	NA	False	NA	-7	True	AATAAA	-18	NA	149371136	149354506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918
ENSMUSG00000025269.17_6	chrX	-	3538	1	ISM	ENSMUSG00000025269.17	ENSMUST00000112720.8	4742	7	17444	1	13807	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTGGATCAGATTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	149355396	149351858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_149351900_149355400
ENSMUSG00000025271.14_0	chrX	+	1894	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-9	-9	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	10.2058806577385	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTTATTTCTTCTTTC	NA	False	NA	10	True	AATAAA	-28	NA	149371242	149426865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_149371339_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025271.14_1	chrX	+	2051	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-9	-9	combination_of_known_junctions	FALSE	canonical	3	14	junction_2	17.6227126175286	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTTATTTCTTCTTTC	NA	False	NA	10	True	AATAAA	-28	NA	149371242	149426865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_149371339_149371940_149372041_149372791_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025271.14_13	chrX	+	2068	15	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	427	-1	combination_of_known_junctions	FALSE	canonical	3	50	junction_1	10.561771651014	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTCTTTCATTGTTCT	NA	False	NA	18	True	AATAAA	-36	NA	149371678	149426873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025271.14_2	chrX	+	1916	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	9	-9	at_least_one_novel_splicesite	TRUE	canonical	3	16	junction_2	17.171552702718	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTTATTTCTTCTTTC	NA	False	NA	10	True	AATAAA	-28	NA	149371233	149426865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_149371339_149371940_149372041_149372935_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025271.14_3	chrX	+	1965	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-9	-9	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	17.7330827049958	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTTATTTCTTCTTTC	NA	False	NA	10	True	AATAAA	-28	NA	149371242	149426865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_149371410_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025271.14_7	chrX	+	2122	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-9	-9	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	22.4049597683688	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTTATTTCTTCTTTC	NA	False	NA	10	True	AATAAA	-28	NA	149371242	149426865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_149371410_149371940_149372041_149372791_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025272.17_12	chrX	-	6560	13	FSM	ENSMUSG00000025272.17	ENSMUST00000112709.8	6610	13	39	11	2	-7	multi-exon	FALSE	canonical	3	18	junction_12	3.93964888452427	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAACCTGAGCTTATTC	NA	False	NA	-28	True	ATTAAA	-7	NA	149440393	149428310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149428518_149428689_149432652_149433429_149433545_149433972_149434036_149434411_149434455_149434548_149434629_149435279_149435372_149435836_149435917_149436115_149436180_149436287_149436393_149436984_149438611_149438879_149438950_149440340
ENSMUSG00000025272.17_24	chrX	-	6642	13	NIC	ENSMUSG00000025272.17	novel	6610	13	NA	NA	2	-12	intron_retention	FALSE	canonical	1	1	junction_12	7.62488615579858	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCCAAAGGAACCTGAGCT	NA	False	NA	-33	True	ATTAAA	-2	NA	149440393	149428315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_149428518_149428689_149432652_149433429_149433545_149433972_149434036_149434411_149434455_149434548_149434629_149435279_149435372_149435836_149435917_149436115_149436180_149436287_149436393_149436984_149438611_149438879_149438950_149440253
ENSMUSG00000025272.17_31	chrX	-	2602	12	ISM	ENSMUSG00000025272.17	ENSMUST00000151403.9	2715	13	2	4137	2	20	5prime_fragment	FALSE	canonical	3	18	junction_11	3.69498207870938	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGGCCTGGAGCAGATTT	NA	False	NA	NA	False	NA	NA	NA	149440393	149432440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_149432652_149433429_149433545_149433972_149434036_149434411_149434455_149434548_149434629_149435279_149435372_149435836_149435917_149436115_149436180_149436287_149436393_149436984_149438611_149438879_149438950_149440340
ENSMUSG00000025272.17_7	chrX	-	2982	2	ISM	ENSMUSG00000025272.17	ENSMUST00000087253.11	3224	14	8933	5	3205	-5	3prime_fragment	FALSE	canonical	3	31	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTGAGCTTATTCTG	NA	False	NA	-26	True	ATTAAA	-9	NA	149431462	149428308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_149428518_149428689
ENSMUSG00000025277.15_1	chr14	-	2107	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	17	102	0	-4	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAATTCTGTGAATTCAG	NA	False	NA	NA	False	AGTAAA	-14	NA	14466854	14413111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
ENSMUSG00000025277.15_2	chr14	-	1950	8	FSM	ENSMUSG00000025277.15	ENSMUST00000225234.2	1958	8	-8	16	-8	-16	multi-exon	FALSE	canonical	3	7	junction_7	23.7589940005541	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGGTTTGTTAATGAATT	NA	False	NA	NA	False	AGTAAA	-2	NA	14466862	14413123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14466809
ENSMUSG00000025278.10_1	chr14	-	9005	46	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	57	-5	at_least_one_novel_splicesite	FALSE	canonical	3	255	junction_40	115.220754303303	220	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACGCTCCCTGTCATTC	NA	False	NA	NA	False	AATAAA	-12	NA	14651759	14518189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14547059_14547099_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
ENSMUSG00000025278.10_13	chr14	-	3305	13	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	109430	5	42646	-5	3prime_fragment	TRUE	canonical	3	510	junction_11	42.6363010434379	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACGCTCCCTGTCATTC	NA	False	NA	NA	False	AATAAA	-12	NA	14542386	14518189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253
ENSMUSG00000025278.10_19	chr14	-	910	1	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	132717	5	65933	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACGCTCCCTGTCATTC	NA	False	NA	NA	False	AATAAA	-12	NA	14519099	14518189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_14518200_14519100
ENSMUSG00000025278.10_23	chr14	-	8966	45	NIC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	57	-5	combination_of_known_splicesites	FALSE	canonical	3	69	junction_16	126.962452557849	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACGCTCCCTGTCATTC	NA	False	NA	NA	False	AATAAA	-12	NA	14651759	14518189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
ENSMUSG00000025278.10_30	chr14	-	9038	46	FSM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	57	5	57	-5	multi-exon	FALSE	canonical	3	76	junction_16	125.273027256567	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACGCTCCCTGTCATTC	NA	False	NA	NA	False	AATAAA	-12	NA	14651759	14518189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14547026_14547099_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
ENSMUSG00000025278.10_5	chr14	-	1705	3	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	127835	5	61051	-5	3prime_fragment	FALSE	canonical	3	634	junction_2	5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACGCTCCCTGTCATTC	NA	False	NA	NA	False	AATAAA	-12	NA	14523981	14518189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_14519469_14521125_14521330_14523759
ENSMUSG00000025278.10_9	chr14	-	2335	8	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	115955	5	49171	-5	3prime_fragment	FALSE	canonical	3	557	junction_4	33.1206822368854	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACGCTCCCTGTCATTC	NA	False	NA	NA	False	AATAAA	-12	NA	14535861	14518189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792
ENSMUSG00000025280.9_0	chr14	-	4658	31	FSM	ENSMUSG00000025280.9	ENSMUST00000026322.9	4687	31	24	5	-19	4	multi-exon	FALSE	canonical	3	105	junction_23	15.9947560851118	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGGATATTAAGTGTTTT	NA	False	NA	-8	True	AATACA	-21	NA	24537096	24498768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_24499291_24500762_24500896_24502260_24502393_24502578_24502744_24503238_24503404_24504637_24504731_24504922_24505017_24505931_24506103_24507084_24507168_24507286_24507374_24510031_24510146_24511767_24511939_24513621_24513760_24514319_24514439_24515328_24515441_24517002_24517176_24519332_24519498_24520601_24520741_24520887_24521016_24521805_24521876_24524240_24524382_24525807_24525950_24526080_24526185_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
ENSMUSG00000025283.16_0	chrX	-	1051	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	102	9	-2	-9	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTCAGCCTGAGCATT	NA	False	NA	-16	True	AATAAA	-15	NA	153999343	153996136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
ENSMUSG00000025283.16_8	chrX	-	2516	5	NIC	ENSMUSG00000025283.16	novel	1352	6	NA	NA	-1	-9	intron_retention	FALSE	canonical	3	1003	junction_1	114.726577130149	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTCAGCCTGAGCATT	NA	False	NA	-16	True	AATAAA	-15	NA	153999342	153996136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_153996664_153996892_153996934_153997028_153998681_153998780_153998833_153999098
ENSMUSG00000025287.16_0	chrX	+	1659	15	FSM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	70	23	8	-15	multi-exon	FALSE	canonical	2	666	junction_2	111.349262068796	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACCTTTTACAGTACTA	NA	False	NA	3	True	ATTAAA	-4	NA	154045508	154080627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025289.16_0	chrX	-	956	7	FSM	ENSMUSG00000025289.16	ENSMUST00000026328.11	990	7	31	3	31	-3	multi-exon	FALSE	canonical	3	951	junction_2	71.6488349909163	372	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCGTTTGCCATTGTAA	NA	False	NA	-4	True	AATAAA	-19	NA	154121432	154106916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_154107025_154109590_154109626_154111441_154111573_154113298_154113422_154115351_154115469_154117833_154117952_154121108
ENSMUSG00000025290.18_2	chr14	+	540	6	FSM	ENSMUSG00000025290.18	ENSMUST00000169826.3	519	6	-13	-8	-13	-5	multi-exon	FALSE	canonical	3	4464	junction_5	3607.86166031903	946	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACACGTCTGCTCTGCTG	NA	False	NA	12	True	AATAAA	-11	NA	24540772	24545921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
ENSMUSG00000025290.18_27	chr14	+	467	4	ISM	ENSMUSG00000025290.18	ENSMUST00000225023.2	1613	5	1031	1106	600	-5	3prime_fragment	FALSE	canonical	3	4092	junction_3	4109.62828813832	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACACGTCTGCTCTGCTG	NA	False	NA	12	True	AATAAA	-11	NA	24541816	24545921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_24541884_24541974_24542185_24543450_24543562_24545842
ENSMUSG00000025290.18_3	chr14	+	521	5	FSM	ENSMUSG00000025290.18	ENSMUST00000225023.2	1613	5	-13	1105	-13	-4	multi-exon	FALSE	canonical	3	4092	junction_4	3560.754932244	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACACGTCTGCTCTGCTGC	NA	False	NA	13	True	AATAAA	-12	NA	24540772	24545922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545842
ENSMUSG00000025290.18_35	chr14	+	2052	1	ISM	ENSMUSG00000025290.18	ENSMUST00000225994.2	4059	3	3084	5	2653	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACACGTCTGCTCTGCTG	NA	False	NA	12	True	AATAAA	-11	NA	24543869	24545921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_24543900_24545900
ENSMUSG00000025290.18_4	chr14	+	2806	4	FSM	ENSMUSG00000025290.18	ENSMUST00000223939.2	2769	4	-27	-10	-16	-3	multi-exon	FALSE	canonical	3	9630	junction_1	1522.07774659071	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACACGTCTGCTCTGCTGCT	NA	False	NA	14	True	AATAAA	-13	NA	24540769	24545923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450
ENSMUSG00000025290.18_5	chr14	+	487	5	ISM	ENSMUSG00000025290.18	ENSMUST00000224568.2	714	6	982	-30	600	-5	3prime_fragment	FALSE	canonical	3	4464	junction_4	4015.85559843727	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACACGTCTGCTCTGCTG	NA	False	NA	12	True	AATAAA	-11	NA	24541816	24545921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
ENSMUSG00000025314.17_0	chr2	-	7572	23	NIC	ENSMUSG00000025314.17	novel	7634	24	NA	NA	47	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	15.2967884059756	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACATTATGTCTTCGATT	NA	False	NA	NA	False	TATAAA	-9	NA	90410944	90263238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90266913_90270200_90270337_90270968_90271130_90274763_90274884_90276499_90276635_90276727_90276802_90278402_90278494_90280119_90280208_90281158_90281201_90282403_90282492_90283392_90283518_90283626_90283838_90285436_90285569_90288481_90288773_90289785_90290059_90290819_90291081_90293424_90293683_90294807_90295072_90298593_90298807_90299877_90300106_90301436_90301680_90305314_90305334_90410499
ENSMUSG00000025314.17_1	chr2	-	2704	1	ISM	ENSMUSG00000025314.17	ENSMUST00000111493.8	7124	22	35738	6	-5153	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACATTATGTCTTCGATT	NA	False	NA	NA	False	TATAAA	-9	NA	90265942	90263238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_90263200_90265900
ENSMUSG00000025314.17_10	chr2	-	6191	18	NIC	ENSMUSG00000025314.17	novel	7124	22	NA	NA	6831	-17	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	17.2050527703477	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATATGTCAACACATTA	NA	False	NA	NA	False	TTTAAA	-21	NA	90294849	90263249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90266913_90270200_90270337_90270968_90271130_90274763_90274884_90276499_90276635_90276727_90276802_90278402_90278494_90280119_90280208_90281158_90281201_90282403_90282492_90283392_90283518_90283626_90283838_90285436_90285569_90288481_90288773_90289785_90290059_90290819_90291081_90293424_90293683_90294807
ENSMUSG00000025314.17_15	chr2	-	4842	12	NIC	ENSMUSG00000025314.17	novel	7124	22	NA	NA	17940	-12	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	20.6145258903995	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCAACACATTATGTCT	NA	False	NA	NA	False	TATAAA	-3	NA	90283740	90263244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90266913_90270200_90270337_90270968_90271130_90274763_90274884_90276499_90276635_90276727_90276802_90278402_90278494_90280119_90280208_90281158_90281201_90282403_90282492_90283392_90283518_90283626
ENSMUSG00000025314.17_26	chr2	-	5197	14	NIC	ENSMUSG00000025314.17	novel	7124	22	NA	NA	13079	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	19.2372296840569	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACATTATGTCTTCGATT	NA	False	NA	NA	False	TATAAA	-9	NA	90288601	90263238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90266913_90270200_90270337_90270968_90271130_90274763_90274884_90276499_90276635_90276727_90276802_90278402_90278494_90280119_90280208_90281158_90281201_90282403_90282492_90283392_90283518_90283626_90283838_90285436_90285569_90288481
ENSMUSG00000025314.17_27	chr2	-	4169	5	ISM	ENSMUSG00000025314.17	ENSMUST00000111493.8	7124	22	25104	5	-15787	-5	3prime_fragment	FALSE	canonical	3	61	junction_3	4.7169905660283	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATTATGTCTTCGATTG	NA	False	NA	NA	False	TATAAA	-10	NA	90276576	90263237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_90266913_90270200_90270337_90270968_90271130_90274763_90274884_90276499
ENSMUSG00000025314.17_4	chr2	-	7589	23	NNC	ENSMUSG00000025314.17	novel	7634	24	NA	NA	33	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	18.6830899810409	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACATTATGTCTTCGATT	NA	False	NA	NA	False	TATAAA	-9	NA	90410958	90263238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_90266913_90270200_90270337_90270968_90271130_90274763_90274884_90276499_90276635_90276727_90276802_90278402_90278494_90280119_90280208_90281158_90281201_90282403_90282492_90283392_90283518_90283626_90283838_90285436_90285569_90288481_90288773_90289785_90290059_90290819_90291081_90293424_90293683_90294807_90295072_90298593_90298810_90299877_90300106_90301436_90301680_90305314_90305334_90410499
ENSMUSG00000025314.17_7	chr2	-	4368	7	ISM	ENSMUSG00000025314.17	ENSMUST00000111493.8	7124	22	23204	12	-17687	-12	3prime_fragment	FALSE	canonical	3	61	junction_3	6.15539510420646	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCAACACATTATGTCT	NA	False	NA	NA	False	TATAAA	-3	NA	90278476	90263244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_90266913_90270200_90270337_90270968_90271130_90274763_90274884_90276499_90276635_90276727_90276802_90278402
ENSMUSG00000025316.17_10	chr8	+	2219	13	FSM	ENSMUSG00000025316.17	ENSMUST00000026354.15	1970	13	-11	-238	-6	-2	multi-exon	FALSE	non_canonical	0	0	junction_8	72.3410134171635	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGAGGCTCAGTGTTGT	NA	False	NA	5	True	AATAAA	-13	NA	122677307	122752914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ENSMUSG00000025316.17_15	chr8	+	2086	12	NIC	ENSMUSG00000025316.17	novel	2289	13	NA	NA	-7	-1	combination_of_known_junctions	FALSE	canonical	3	31	junction_10	73.218342099741	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGCTCAGTGTTGTT	NA	False	NA	6	True	AATAAA	-14	NA	122677306	122752915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122750741_122750886_122752302
ENSMUSG00000025316.17_3	chr8	+	2329	14	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	94	junction_9	50.3807984461442	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677307	122752916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ENSMUSG00000025316.17_4	chr8	+	2211	13	FSM	ENSMUSG00000025316.17	ENSMUST00000093078.13	2289	13	77	1	-6	-1	multi-exon	FALSE	canonical	3	61	junction_4	55.5245191084283	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGCTCAGTGTTGTT	NA	False	NA	6	True	AATAAA	-14	NA	122677307	122752915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ENSMUSG00000025316.17_5	chr8	+	2338	14	FSM	ENSMUSG00000025316.17	ENSMUST00000170857.8	5444	14	25	3081	-6	0	multi-exon	FALSE	non_canonical	0	0	junction_9	67.0446287820338	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677307	122752916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ENSMUSG00000025316.17_6	chr8	+	2211	13	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	-6	-1	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_9	80.1271125566538	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGCTCAGTGTTGTT	NA	False	NA	6	True	AATAAA	-14	NA	122677307	122752915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122750741_122750886_122752302
ENSMUSG00000025316.17_8	chr8	+	2204	13	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	-9	-2	combination_of_known_junctions	FALSE	canonical	3	31	junction_11	67.3046040195039	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGAGGCTCAGTGTTGT	NA	False	NA	5	True	AATAAA	-13	NA	122677304	122752914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122750741_122750886_122752302
ENSMUSG00000025317.8_1	chr8	-	1439	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20954	-654	3524	654	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAAAACAAAAATCCAAA	NA	False	NA	NA	False	NA	NA	NA	122650689	122642210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
ENSMUSG00000025317.8_2	chr8	-	1557	3	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20973	-642	3543	642	intron_retention	FALSE	canonical	3	94	junction_1	2	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTATCCCAACACAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	122650670	122642222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_122643247_122644726_122644883_122650293
ENSMUSG00000025318.14_0	chr8	+	4080	5	FSM	ENSMUSG00000025318.14	ENSMUST00000026357.12	3637	5	-454	11	-454	-11	multi-exon	FALSE	canonical	2	10	junction_1	1.08972473588517	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCAGCGACGCTCAGC	NA	False	NA	4	True	AATAAA	-15	NA	122456847	122517549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_122457744_122479705_122480484_122508899_122509025_122511298_122512168_122516137
ENSMUSG00000025323.11_0	chr12	-	5665	6	FSM	ENSMUSG00000025323.11	ENSMUST00000222314.2	2677	6	-65	-2923	7	-98	multi-exon	FALSE	canonical	2	11	junction_4	4.07921561087423	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAACAATTGCAAGTAACC	NA	False	NA	NA	False	AATAAA	-24	NA	118265168	118198765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_118202130_118218144_118218345_118225461_118225691_118262372_118263928_118264433_118264544_118264961
ENSMUSG00000025323.11_4	chr12	-	4076	4	ISM	ENSMUSG00000025323.11	ENSMUST00000222314.2	2677	6	2252	-2727	2252	-294	3prime_fragment	FALSE	canonical	3	21	junction_2	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAATGGAAAAAA	NA	False	NA	NA	False	TATAAA	-38	NA	118262851	118198961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_118202130_118218144_118218345_118225461_118225691_118262372
ENSMUSG00000025323.11_6	chr12	-	3229	1	ISM	ENSMUSG00000025323.11	ENSMUST00000026367.11	5694	6	63111	98	63109	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAACAATTGCAAGTAACC	NA	False	NA	NA	False	AATAAA	-24	NA	118201994	118198765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_118198800_118202000
ENSMUSG00000025324.9_0	chr7	+	5046	21	FSM	ENSMUSG00000025324.9	ENSMUST00000168747.3	5419	21	-27	400	-27	-400	multi-exon	FALSE	canonical	1	3	junction_4	4.04474968323134	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGTGTCTAGATTTAT	NA	False	NA	NA	False	TATAAA	-23	NA	58307966	58478768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_58308664_58389939_58390145_58423702_58423789_58434479_58434587_58434973_58435106_58436202_58436334_58437941_58438195_58440731_58440950_58444217_58444413_58447047_58447649_58453211_58453316_58453416_58453544_58457122_58457308_58463273_58463599_58465904_58465982_58469357_58469484_58474047_58474249_58476820_58476902_58476993_58477099_58477522_58477711_58477866
ENSMUSG00000025326.13_0	chr7	+	4352	11	FSM	ENSMUSG00000025326.13	ENSMUST00000107537.5	4911	11	54	505	3	-505	multi-exon	FALSE	canonical	3	99	junction_1	51.6876194073591	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTAAGGAGAGACATACTG	NA	False	NA	1	True	AATAAA	-17	NA	58878552	58955970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_58879020_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
ENSMUSG00000025326.13_1	chr7	+	3841	12	NIC	ENSMUSG00000025326.13	novel	9856	13	NA	NA	3	647	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	67.1986078171415	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGTTGTCTTCATGTGT	NA	False	NA	1	True	ATTAAA	-15	NA	58878552	58955339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_58879020_58893097_58893218_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
ENSMUSG00000025326.13_2	chr7	+	3907	13	FSM	ENSMUSG00000025326.13	ENSMUST00000200758.4	9856	13	2	5947	2	645	multi-exon	FALSE	canonical	3	50	junction_1	78.4443805083151	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTATGTTGTCTTCATGT	NA	False	NA	-1	True	ATTAAA	-13	NA	58878551	58955337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_58879020_58890714_58890782_58893097_58893218_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
ENSMUSG00000025326.13_22	chr7	+	3845	8	ISM	ENSMUSG00000025326.13	ENSMUST00000107537.5	4911	11	47227	0	-957	0	3prime_fragment	FALSE	canonical	3	221	junction_3	26.2281979431859	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATTTGTGTTCTTCAG	NA	False	NA	7	True	AATAAA	-7	NA	58925725	58956475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
ENSMUSG00000025326.13_31	chr7	+	3706	1	ISM	ENSMUSG00000025326.13	ENSMUST00000200758.4	9856	13	78325	704	3616	-704	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATATGGAGTGTCTTTC	NA	False	NA	5	True	NA	NA	NA	58956874	58960580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_58956900_58960600
ENSMUSG00000025328.10_0	chr4	-	3084	16	FSM	ENSMUSG00000025328.10	ENSMUST00000026377.9	3072	16	-22	10	-22	-6	multi-exon	FALSE	canonical	2	14	junction_8	5.0710507348631	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCACAAAAGCCCTGGGTG	NA	False	NA	-10	True	AATAAA	-4	NA	140537981	140512685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_140513946_140516147_140516274_140517023_140517104_140518473_140518577_140518668_140518814_140520288_140520441_140521147_140521256_140522923_140523036_140523123_140523228_140523647_140523827_140525359_140525486_140526215_140526334_140527391_140527454_140528855_140528929_140530777_140530959_140537826
ENSMUSG00000025328.10_2	chr4	-	1444	3	NNC	ENSMUSG00000025328.10	novel	3310	15	NA	NA	14869	-6	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	15.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCACAAAAGCCCTGGGTG	3369	False	NA	-10	True	AATAAA	-4	NA	140516464	140512685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_140513946_140516147_140516274_140516406
ENSMUSG00000025328.10_7	chr4	-	1978	7	ISM	ENSMUSG00000025328.10	ENSMUST00000172098.2	3310	15	10078	2	10078	-2	3prime_fragment	FALSE	canonical	2	15	junction_6	6.49786289653931	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAAGCCCTGGGTGTTGG	NA	False	NA	-6	True	AATAAA	-8	NA	140521255	140512681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_140513946_140516147_140516274_140517023_140517104_140518473_140518577_140518668_140518814_140520288_140520441_140521147
ENSMUSG00000025330.7_1	chr4	-	2446	16	FSM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	33	-163	33	163	multi-exon	TRUE	canonical	3	76	junction_4	15.9114214743163	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140501514	140473012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477891_140478037_140479841_140479997_140483683_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
ENSMUSG00000025330.7_25	chr4	-	1680	10	ISM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	28	10011	28	27	5prime_fragment	FALSE	canonical	3	81	junction_8	13.5810325249756	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCCACACGCCTTCAGAT	NA	False	NA	NA	False	AATAAA	-19	NA	140501519	140483186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
ENSMUSG00000025332.15_0	chrX	+	5705	26	FSM	ENSMUSG00000025332.15	ENSMUST00000112588.9	6449	26	14	730	-11	33	multi-exon	FALSE	canonical	3	451	junction_24	43.2417205948144	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAAGCCTATTTTAATT	NA	False	NA	13	True	AAAAAG	-19	NA	151016238	151056801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151053689_151053828_151054007_151054590_151054855_151054926_151055070_151055271_151055704
ENSMUSG00000025332.15_2	chrX	+	5569	25	NIC	ENSMUSG00000025332.15	novel	6449	26	NA	NA	12	33	intron_retention	FALSE	canonical	3	39	junction_21	110.865502850175	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAAGCCTATTTTAATT	NA	False	NA	13	True	AAAAAG	-19	NA	151016236	151056801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151054007_151054590_151054855_151054926_151055070_151055271_151055704
ENSMUSG00000025332.15_3	chrX	+	5713	26	FSM	ENSMUSG00000025332.15	ENSMUST00000112584.8	5900	26	224	-37	-10	33	multi-exon	FALSE	canonical	3	193	junction_24	80.1180528969595	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAAGCCTATTTTAATT	NA	False	NA	13	True	AAAAAG	-19	NA	151016239	151056801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151053689_151053828_151054007_151054590_151054855_151054935_151055070_151055271_151055704
ENSMUSG00000025333.11_1	chrX	+	1658	9	FSM	ENSMUSG00000025333.11	ENSMUST00000026383.4	1586	9	-69	-3	-4	3	multi-exon	FALSE	canonical	3	18	junction_8	3.91910385164772	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCCATTTTGACATGGAT	NA	False	NA	NA	False	AATAAA	-13	NA	151564912	151591645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_151565289_151568038_151568149_151569121_151569217_151573479_151573573_151576324_151576435_151578551_151578661_151580695_151580814_151581373_151581612_151591236
ENSMUSG00000025337.11_1	chr5	-	1443	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	99	6	-26	-6	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAGCTCTGGCTTGCATT	NA	False	NA	-6	True	AATAAA	-11	NA	130284272	130274577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
ENSMUSG00000025337.11_2	chr5	-	1387	5	NIC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	-26	-3	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	356.535411985962	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTCTGGCTTGCATTTCT	NA	False	NA	-3	True	AATAAA	-14	NA	130284272	130274574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282851_130284050
ENSMUSG00000025340.15_0	chr5	+	2643	9	FSM	ENSMUSG00000025340.15	ENSMUST00000119797.8	2690	9	40	7	14	-2	multi-exon	FALSE	canonical	3	81	junction_3	33.6962535009458	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGATTGGTTTTGTTTT	NA	False	NA	14	True	AATAAA	-36	NA	130200678	130243176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_130200736_130216241_130216428_130219717_130219885_130226790_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
ENSMUSG00000025340.15_1	chr5	+	2645	9	NIC	ENSMUSG00000025340.15	novel	2690	9	NA	NA	15	-2	intron_retention	FALSE	canonical	3	67	junction_3	37.9637985454564	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGATTGGTTTTGTTTT	NA	False	NA	14	True	AATAAA	-36	NA	130200679	130243176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_130200736_130216241_130216428_130219717_130219885_130226787_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
ENSMUSG00000025340.15_15	chr5	+	2504	8	FSM	ENSMUSG00000025340.15	ENSMUST00000026390.8	2828	8	323	1	264	-1	multi-exon	FALSE	canonical	3	81	junction_2	35.7839320913503	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGATTGGTTTTGTTTTG	2580	False	NA	15	True	AATAAA	-37	NA	130216324	130243177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_130216428_130219717_130219885_130226790_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
ENSMUSG00000025340.15_21	chr5	+	1359	1	ISM	ENSMUSG00000025340.15	ENSMUST00000119797.8	2690	9	41180	6	-188	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGATTGGTTTTGTTTTG	NA	False	NA	15	True	AATAAA	-37	NA	130241818	130243177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_130241800_130243200
ENSMUSG00000025351.15_25	chr10	+	807	7	ISM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	693	-1	-230	1	3prime_fragment	FALSE	canonical	3	3705	junction_4	220.245065526765	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGGAGATGGTCTCAG	1047	False	NA	29	True	ATTAAA	-21	NA	128746260	128748685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ENSMUSG00000025351.15_5	chr10	+	857	8	FSM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	206	0	-17	0	multi-exon	FALSE	canonical	3	3700	junction_1	227.971623726484	1154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAGGAGATGGTCTCA	560	False	NA	28	True	ATTAAA	-20	NA	128745773	128748684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ENSMUSG00000025352.7_0	chr10	-	2046	1	Genic_Genomic	ENSMUSG00000025352.7	novel	NA	NA	NA	NA	7753	375	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	1387	False	NA	NA	False	NA	NA	NA	128719834	128717788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_128717800_128719800
ENSMUSG00000025353.6_0	chr10	-	999	4	FSM	ENSMUSG00000025353.6	ENSMUST00000026409.5	1573	4	-19	593	-7	-13	multi-exon	FALSE	canonical	3	462	junction_3	176.577335905703	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACAGAGAGATTTTCTC	NA	False	NA	-6	True	AATAAA	-32	NA	128657482	128654363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128654885_128655822_128655975_128656129_128656384_128657410
ENSMUSG00000025353.6_2	chr10	-	920	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219524.2	724	4	32	-228	-7	-13	multi-exon	FALSE	canonical	3	322	junction_3	240.049994792751	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACAGAGAGATTTTCTC	NA	False	NA	-6	True	AATAAA	-32	NA	128657482	128654363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128654885_128655822_128655975_128656129_128656305_128657410
ENSMUSG00000025353.6_4	chr10	-	746	3	FSM	ENSMUSG00000025353.6	ENSMUST00000217685.2	666	3	-23	-57	-8	-13	multi-exon	FALSE	canonical	3	26	junction_2	430	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACAGAGAGATTTTCTC	NA	False	NA	-6	True	AATAAA	-32	NA	128657483	128654363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128654885_128655822_128655975_128657410
ENSMUSG00000025353.6_5	chr10	-	2011	3	ISM	ENSMUSG00000025353.6	ENSMUST00000219215.2	1051	4	2	19	2	-19	intron_retention	FALSE	canonical	3	748	junction_2	69	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGCAAGGACAGAGAGAT	NA	False	NA	-12	True	AATAAA	-26	NA	128657473	128654369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128654885_128655822_128655975_128656129
ENSMUSG00000025354.6_1	chr10	+	3002	7	FSM	ENSMUSG00000025354.6	ENSMUST00000217745.2	4133	7	19	1112	-10	644	multi-exon	FALSE	canonical	3	291	junction_3	32.4242707448191	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTACATCTTCCTTCTCT	4035	False	NA	NA	False	TATAAA	-13	NA	128641441	128654016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128641553_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
ENSMUSG00000025354.6_12	chr10	+	2495	6	ISM	ENSMUSG00000025354.6	ENSMUST00000219508.2	2298	7	888	-644	684	644	3prime_fragment	FALSE	canonical	3	291	junction_2	34.2776895370735	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTACATCTTCCTTCTCT	5026	False	NA	NA	False	TATAAA	-13	NA	128642432	128654016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
ENSMUSG00000025354.6_5	chr10	+	3031	7	FSM	ENSMUSG00000025354.6	ENSMUST00000026410.2	4229	7	-101	1299	-8	644	multi-exon	FALSE	canonical	3	32	junction_1	125.746658890892	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTACATCTTCCTTCTCT	4037	False	NA	NA	False	TATAAA	-13	NA	128641443	128654016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128641584_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
ENSMUSG00000025355.8_0	chr10	+	3089	7	ISM	ENSMUSG00000025355.8	ENSMUST00000026411.8	3402	9	3608	0	3607	0	3prime_fragment	FALSE	canonical	1	1	junction_5	1.89296944860009	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCTCCTTGTTTCAGAGT	NA	False	NA	NA	False	AATAAA	-15	NA	128630437	128636693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128630526_128630688_128630905_128631428_128631675_128632257_128632384_128633995_128634161_128634304_128634433_128634573
ENSMUSG00000025357.9_0	chr10	-	2803	24	FSM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	24	7	24	-5	multi-exon	FALSE	canonical	3	46	junction_14	14.5196561901106	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAAGCCCTCCCGCAAG	9766	False	NA	-17	True	AATAAA	-9	NA	128579920	128556009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572513_128572588_128572877_128573014_128579664
ENSMUSG00000025357.9_10	chr10	-	2097	19	ISM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	9961	10	-3067	-8	3prime_fragment	FALSE	canonical	3	46	junction_14	15.6240555270106	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAACAAAAGCCCTCCCGC	8504	False	NA	-20	True	AATAAA	-6	NA	128569983	128556012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956
ENSMUSG00000025357.9_15	chr10	-	852	4	ISM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	22594	7	9566	-5	3prime_fragment	FALSE	canonical	3	88	junction_2	12.5521135891752	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAAGCCCTCCCGCAAG	8883	False	NA	-17	True	AATAAA	-9	NA	128557350	128556009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046
ENSMUSG00000025357.9_30	chr10	-	2484	23	ISM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	6938	63	-6090	-61	3prime_fragment	FALSE	canonical	3	46	junction_14	14.3929505242458	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTACCCCTCTACAGAC	5481	False	NA	-73	True	AATAAA	-16	NA	128573006	128556065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572513_128572588_128572877
ENSMUSG00000025357.9_8	chr10	-	1635	14	ISM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	12930	4	-98	-2	3prime_fragment	FALSE	canonical	3	55	junction_10	15.9692752333752	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCCCTCCCGCAAGGTT	1662	False	NA	-14	True	AATAAA	-12	NA	128567014	128556006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936
ENSMUSG00000025358.17_1	chr10	-	2407	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	-2	1	-1	-1	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	1059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTAGAGTGAATCTCTT	8246	False	NA	-22	True	ATTAAA	-14	NA	128540901	128533813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ENSMUSG00000025358.17_2	chr10	-	2261	7	FSM	ENSMUSG00000025358.17	ENSMUST00000026415.9	2240	7	-27	6	0	-1	multi-exon	FALSE	canonical	3	439	junction_2	273.112309011024	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTAGAGTGAATCTCTT	8248	False	NA	-22	True	ATTAAA	-14	NA	128540899	128533813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ENSMUSG00000025358.17_3	chr10	-	3112	7	ISM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	1	1	1	-1	intron_retention	FALSE	canonical	3	682	junction_2	229.276155662894	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTAGAGTGAATCTCTT	8249	False	NA	-22	True	ATTAAA	-14	NA	128540898	128533813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794
ENSMUSG00000025359.11_10	chr10	+	513	3	ISM	ENSMUSG00000025359.11	ENSMUST00000054125.9	2130	11	12361	114	12361	-114	3prime_fragment	FALSE	canonical	3	76	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGAGGGCTTTTGTTGCTG	NA	False	NA	4	True	AATAAA	-15	NA	128554487	128555993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128554673_128554768_128554857_128555753
ENSMUSG00000025359.11_2	chr10	+	2170	12	NIC	ENSMUSG00000025359.11	novel	2130	11	NA	NA	-27	-114	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	18.002295537739	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGAGGGCTTTTGTTGCTG	NA	False	NA	4	True	AATAAA	-15	NA	128541021	128555993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_128541154_128542104_128542228_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
ENSMUSG00000025359.11_5	chr10	+	2016	11	FSM	ENSMUSG00000025359.11	ENSMUST00000054125.9	2130	11	0	114	0	-114	multi-exon	FALSE	canonical	3	48	junction_3	12.3385574521497	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGAGGGCTTTTGTTGCTG	NA	False	NA	4	True	AATAAA	-15	NA	128542126	128555993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128542228_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
ENSMUSG00000025359.11_7	chr10	+	1436	7	ISM	ENSMUSG00000025359.11	ENSMUST00000054125.9	2130	11	9353	116	9353	-116	3prime_fragment	FALSE	canonical	3	56	junction_2	10.2699670020026	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGGAGGGCTTTTGTTGC	NA	False	NA	2	True	AATAAA	-13	NA	128551479	128555991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
ENSMUSG00000025359.11_8	chr10	+	1457	6	ISM	ENSMUSG00000025359.11	ENSMUST00000054125.9	2130	11	9570	116	9570	-116	3prime_fragment	FALSE	canonical	3	56	junction_1	10.8811764069884	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGGAGGGCTTTTGTTGC	NA	False	NA	2	True	AATAAA	-13	NA	128551696	128555991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
ENSMUSG00000025362.7_0	chr10	-	435	4	FSM	ENSMUSG00000025362.7	ENSMUST00000026420.7	681	4	246	0	23	0	multi-exon	FALSE	canonical	3	11844	junction_3	3964.03030036631	3023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462370	128460405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128460506_128461075_128461207_128461931_128462110_128462344
ENSMUSG00000025362.7_1	chr10	-	410	3	FSM	ENSMUSG00000025362.7	ENSMUST00000219591.2	596	3	183	3	183	0	multi-exon	FALSE	canonical	3	15147	junction_1	3128	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462110	128460405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128460506_128461075_128461207_128461931
ENSMUSG00000025364.14_0	chr10	-	1598	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	10	875	10	-875	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	1853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCACCGTCGTCAAGC	-4	True	NA	-17	True	AATAAA	-11	NA	128401846	128394511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ENSMUSG00000025364.14_5	chr10	-	3055	11	ISM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	534	877	469	-875	3prime_fragment	FALSE	canonical	3	1884	junction_8	103.450906230927	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCACCGTCGTCAAGC	9279	False	NA	-17	True	AATAAA	-11	NA	128401269	128394511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445
ENSMUSG00000025366.9_0	chr10	-	3702	31	FSM	ENSMUSG00000025366.9	ENSMUST00000026427.8	3981	31	-21	300	-20	-9	multi-exon	FALSE	canonical	3	144	junction_22	28.253790306199	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATATACAGAAAACAG	8298	False	NA	-22	True	AATACA	-29	NA	128361760	128346133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128346529_128346848_128346899_128347334_128347441_128347523_128347656_128347737_128347837_128347926_128348088_128348195_128348334_128351554_128351642_128351733_128351806_128352013_128352110_128352227_128352318_128352401_128352451_128352544_128352628_128352822_128353000_128353117_128353265_128353483_128353634_128354796_128354884_128355010_128355083_128355296_128355390_128355467_128355555_128355657_128355707_128356141_128356225_128356512_128356690_128356775_128356900_128357482_128357539_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942_128358985_128361332
ENSMUSG00000025369.16_0	chr10	+	4547	28	FSM	ENSMUSG00000025369.16	ENSMUST00000026433.9	4533	28	-19	5	-19	-5	multi-exon	FALSE	canonical	3	73	junction_11	16.862633913377	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCCATCTTGTGGGTGCC	2648	False	NA	41	True	TATAAA	-14	NA	128295143	128326036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128323887_128324764
ENSMUSG00000025369.16_15	chr10	+	4628	29	FSM	ENSMUSG00000025369.16	ENSMUST00000099131.11	4562	29	-23	-43	-9	-7	multi-exon	FALSE	canonical	1	3	junction_18	29.4428493449771	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTCCATCTTGTGGGTG	2658	False	NA	39	True	TATAAA	-12	NA	128295153	128326034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317550_128317644_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128323887_128324764
ENSMUSG00000025369.16_2	chr10	+	4067	28	FSM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	-44	9	-17	-9	multi-exon	FALSE	canonical	3	31	junction_27	21.277769719239	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAAAAGAACTTTTTTA	2650	False	NA	NA	False	AAAAAG	-15	NA	128295145	128325216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128324229_128324764
ENSMUSG00000025369.16_33	chr10	+	3797	15	ISM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	15202	-790	322	24	3prime_fragment	FALSE	canonical	3	31	junction_14	24.434940690139	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAATTAATTTGCTTT	7003	False	NA	20	True	NA	NA	NA	128310391	128326015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128324229_128324764
ENSMUSG00000025369.16_34	chr10	+	3485	15	ISM	ENSMUSG00000025369.16	ENSMUST00000026433.9	4533	28	15220	5	313	-5	3prime_fragment	FALSE	canonical	3	76	junction_14	15.1489206189209	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCCATCTTGTGGGTGCC	6994	False	NA	41	True	TATAAA	-14	NA	128310382	128326036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128323887_128324764
ENSMUSG00000025371.13_0	chr11	+	1532	8	FSM	ENSMUSG00000025371.13	ENSMUST00000026434.13	1557	8	22	3	2	-3	multi-exon	FALSE	canonical	3	311	junction_5	11.6303613925986	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTTGAGTTTAGTGTCTT	NA	False	NA	15	True	ATTAAA	-30	NA	119804657	119810371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119804764_119806238_119806349_119806457_119806546_119806850_119806938_119807506_119807573_119807754_119807836_119808809_119808865_119809432
ENSMUSG00000025371.13_2	chr11	+	2109	7	ISM	ENSMUSG00000025371.13	ENSMUST00000026434.13	1557	8	12	4	-8	-4	intron_retention	FALSE	canonical	3	311	junction_5	12.2667119564381	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTTGAGTTTAGTGTCT	NA	False	NA	14	True	ATTAAA	-29	NA	119804647	119810370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119804764_119806238_119806349_119806457_119806546_119806850_119806938_119807506_119807573_119807754_119807836_119808809
ENSMUSG00000025372.17_0	chr11	+	2062	14	FSM	ENSMUSG00000025372.17	ENSMUST00000026436.10	2394	14	329	3	-24	-3	multi-exon	FALSE	canonical	3	19	junction_13	8.07215976759687	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTAGTGTGTGGTCTGT	NA	False	NA	7	True	AATAAA	-13	NA	119833917	119897605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119897184
ENSMUSG00000025372.17_1	chr11	+	2110	15	FSM	ENSMUSG00000025372.17	ENSMUST00000106233.2	2442	15	329	3	-24	-3	multi-exon	FALSE	canonical	2	2	junction_13	13.1158495799579	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTAGTGTGTGGTCTGT	NA	False	NA	7	True	AATAAA	-13	NA	119833917	119897605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119893863_119893912_119897184
ENSMUSG00000025372.17_14	chr11	+	2427	1	NIC	ENSMUSG00000025372.17	novel	4005	13	NA	NA	1358	-744	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAATCTTTAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	119889854	119892281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_119889900_119892300
ENSMUSG00000025372.17_2	chr11	+	1943	14	NIC	ENSMUSG00000025372.17	novel	2394	14	NA	NA	-28	-6	combination_of_known_junctions	TRUE	canonical	1	2	junction_8	11.5282005657441	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTGTAGTGTGTGGTC	NA	False	NA	4	True	AATAAA	-10	NA	119833913	119897602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887834_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119897184
ENSMUSG00000025372.17_3	chr11	+	3191	14	FSM	ENSMUSG00000025372.17	ENSMUST00000075180.12	3518	14	326	1	-27	-1	multi-exon	FALSE	canonical	2	3	junction_13	10.9230769230769	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGTTGGTCTGTGCCTC	NA	False	NA	NA	False	AATAAA	-16	NA	119833914	119893446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119891899
ENSMUSG00000025372.17_6	chr11	+	2510	13	FSM	ENSMUSG00000025372.17	ENSMUST00000106231.8	4005	13	330	1165	-23	-743	multi-exon	FALSE	canonical	3	21	junction_12	7.16278964898143	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATCTTTAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	119833918	119892282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377
ENSMUSG00000025373.15_1	chr10	+	2282	7	FSM	ENSMUSG00000025373.15	ENSMUST00000096386.13	3144	7	-72	934	17	-13	multi-exon	FALSE	canonical	3	111	junction_5	11.6535640709422	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATCAAGAAAACTTAAAACC	243	False	NA	NA	False	AAGAAA	-16	NA	128247542	128275273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271454_128272336_128272473_128273176_128273281_128273951
ENSMUSG00000025373.15_21	chr10	+	948	1	NIC	ENSMUSG00000025373.15	novel	3283	8	NA	NA	23268	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAACATCAAGAA	2376	False	NA	NA	False	AAGAAA	-5	NA	128274314	128275262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_128274300_128275300
ENSMUSG00000025373.15_7	chr10	+	2282	7	NNC	ENSMUSG00000025373.15	novel	3144	7	NA	NA	15	1	intron_retention	FALSE	canonical	3	10	junction_4	45.9190108294545	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTTCTTATGCCCTT	241	False	NA	NA	False	AAGAAA	-30	NA	128247540	128275287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271438_128272336_128272473_128273176_128273281_128273951
ENSMUSG00000025374.14_1	chr10	-	1068	7	FSM	ENSMUSG00000025374.14	ENSMUST00000026439.14	1130	7	61	1	61	-1	multi-exon	FALSE	canonical	3	274	junction_1	32.5444140965679	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGAGTCTGTGTTTCT	NA	False	NA	-8	True	AATAAA	-12	NA	128245682	128237264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245604
ENSMUSG00000025374.14_5	chr10	-	1393	6	FSM	ENSMUSG00000025374.14	ENSMUST00000164199.8	1371	6	-23	1	-15	-1	multi-exon	FALSE	canonical	3	274	junction_1	33.0732520324204	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGAGTCTGTGTTTCT	NA	False	NA	-8	True	AATAAA	-12	NA	128245620	128237264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115
ENSMUSG00000025377.15_10	chr11	-	2740	13	NIC	ENSMUSG00000025377.15	novel	2770	13	NA	NA	13	-2	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	21.0797098335501	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTGCCACTTGGGCTG	NA	False	NA	-10	True	AATAAA	-14	NA	119989513	119981358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119984939_119985144_119986169_119986242_119986359_119986436_119986629_119986698_119987390_119987501_119987703_119987796_119988334_119988408_119989451
ENSMUSG00000025377.15_13	chr11	-	798	1	ISM	ENSMUSG00000025377.15	ENSMUST00000093901.12	2770	13	7403	0	5932	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCACTTGGGCTGGT	NA	False	NA	-8	True	AATAAA	-16	NA	119982154	119981356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_119981400_119982200
ENSMUSG00000025377.15_3	chr11	-	2732	13	FSM	ENSMUSG00000025377.15	ENSMUST00000093901.12	2770	13	38	0	7	0	multi-exon	FALSE	canonical	3	76	junction_11	8.42944574426786	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCACTTGGGCTGGT	NA	False	NA	-8	True	AATAAA	-16	NA	119989519	119981356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119984939_119985144_119986169_119986242_119986359_119986436_119986629_119986698_119987406_119987501_119987703_119987796_119988334_119988408_119989451
ENSMUSG00000025377.15_4	chr11	-	3274	12	NIC	ENSMUSG00000025377.15	novel	2770	13	NA	NA	5	1	intron_retention	FALSE	canonical	3	79	junction_8	7.84877734332705	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCCACTTGGGCTGGTT	NA	False	NA	-7	True	AATAAA	-17	NA	119989521	119981355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119984939_119985144_119986169_119986242_119986359_119986436_119986629_119986698_119987406_119987501_119987703_119988408_119989451
ENSMUSG00000025381.4_0	chr10	+	930	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	81	372	-5	-6	multi-exon	FALSE	canonical	3	1395	junction_2	667.271938567778	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTACAAACTGTGTTGTC	NA	False	NA	27	True	AATGAA	-23	NA	128158408	128163050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUSG00000025381.4_1	chr10	+	812	6	FSM	ENSMUSG00000025381.4	ENSMUST00000026446.4	763	6	-61	12	-52	-12	multi-exon	FALSE	canonical	3	76	junction_1	1015.96602305392	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCGAAAGTACAAACTGT	NA	False	NA	21	True	AATGAA	-17	NA	128158275	128163044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128158400_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUSG00000025381.4_6	chr10	+	389	3	ISM	ENSMUSG00000025381.4	ENSMUST00000026446.4	763	6	3672	6	3293	-6	3prime_fragment	FALSE	canonical	3	2499	junction_1	261.5	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTACAAACTGTGTTGTC	NA	False	NA	27	True	AATGAA	-23	NA	128162008	128163050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128162137_128162445_128162543_128162886
ENSMUSG00000025383.3_0	chr10	-	1370	4	FSM	ENSMUSG00000025383.3	ENSMUST00000026449.3	1360	4	-12	2	-12	-2	multi-exon	FALSE	canonical	2	12	junction_1	5.73488351136175	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTGGGTCTAAATTTCT	NA	False	NA	NA	False	NA	NA	NA	128133965	128132009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128132845_128132946_128133094_128133358_128133461_128133679
ENSMUSG00000025384.16_0	chr11	-	3161	10	FSM	ENSMUSG00000025384.16	ENSMUST00000026448.10	3193	10	30	2	1	-2	multi-exon	FALSE	canonical	1	16	junction_4	19.8612470857816	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTGTGTTGTGCTC	NA	False	NA	-5	True	NA	NA	NA	120269560	120260389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707_120265478_120266242_120266400_120267531_120268488_120269153_120269273_120269367
ENSMUSG00000025384.16_1	chr11	-	4037	9	NIC	ENSMUSG00000025384.16	novel	3193	10	NA	NA	1	-6	intron_retention	FALSE	canonical	3	28	junction_8	14.9994791576241	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTCTGCCTCTGTGTTGT	NA	False	NA	-9	True	NA	NA	NA	120269560	120260393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120264070_120264707_120265478_120266242_120266400_120267531_120268488_120269153_120269273_120269367
ENSMUSG00000025384.16_11	chr11	-	4284	9	NIC	ENSMUSG00000025384.16	novel	3193	10	NA	NA	6	-6	intron_retention	FALSE	canonical	1	16	junction_4	21.0237960416286	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTCTGCCTCTGTGTTGT	NA	False	NA	-9	True	NA	NA	NA	120269555	120260393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707_120265478_120266242_120268488_120269153_120269273_120269367
ENSMUSG00000025384.16_12	chr11	-	3035	9	NIC	ENSMUSG00000025384.16	novel	3193	10	NA	NA	8	-2	combination_of_known_junctions	FALSE	canonical	1	16	junction_4	21.8274483162829	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTGTGTTGTGCTC	NA	False	NA	-5	True	NA	NA	NA	120269553	120260389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707_120265478_120266242_120266400_120267531_120268488_120269367
ENSMUSG00000025384.16_18	chr11	-	2137	1	NIC	ENSMUSG00000025384.16	novel	3766	9	NA	NA	160	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAGAGAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-21	NA	120269140	120267003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120267000_120269100
ENSMUSG00000025384.16_2	chr11	-	2344	8	ISM	ENSMUSG00000025384.16	ENSMUST00000026448.10	3193	10	1610	0	1320	0	3prime_fragment	FALSE	canonical	1	16	junction_4	19.219462924391	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTGTGTTGTGCTCTG	NA	False	NA	-3	True	NA	NA	NA	120267980	120260387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707_120265478_120266242_120266400_120267531
ENSMUSG00000025384.16_5	chr11	-	1555	6	ISM	ENSMUSG00000025384.16	ENSMUST00000026448.10	3193	10	4290	6	-307	-6	3prime_fragment	FALSE	canonical	1	16	junction_4	22.547727158186	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTCTGCCTCTGTGTTGT	NA	False	NA	-9	True	NA	NA	NA	120265300	120260393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707
ENSMUSG00000025384.16_8	chr11	-	3240	9	FSM	ENSMUSG00000025384.16	ENSMUST00000135635.8	3766	9	13	513	13	-6	multi-exon	FALSE	canonical	1	16	junction_4	18.3809514171601	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTCTGCCTCTGTGTTGT	NA	False	NA	-9	True	NA	NA	NA	120269548	120260393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707_120265478_120266242_120266400_120267531_120268488_120269153
ENSMUSG00000025393.13_0	chr10	+	1761	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	36	119	3	0	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	10013	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATGTCTGTTTATGTTG	NA	False	NA	21	True	AATAAA	-14	NA	127919177	127926141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ENSMUSG00000025395.15_1	chr10	+	1509	13	FSM	ENSMUSG00000025395.15	ENSMUST00000026461.8	1583	13	28	46	4	8	multi-exon	FALSE	canonical	2	393	junction_7	89.7794751970998	491	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTTTGTAAAATGTATT	1012	False	NA	10	True	AATAAA	-20	NA	127851068	127865860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
ENSMUSG00000025400.12_0	chr10	+	672	6	NNC	ENSMUSG00000025400.12	novel	514	3	NA	NA	-13	-5	at_least_one_novel_splicesite	TRUE	canonical	3	36	junction_5	3.96988664825584	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAGTGACTGATGCAAT	NA	False	NA	1	True	AATAAA	-11	NA	127563702	127567631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_127563897_127564039_127564146_127564315_127564346_127564982_127565037_127565344_127565419_127567417
ENSMUSG00000025401.10_2	chr10	+	3029	24	ISM	ENSMUSG00000025401.10	ENSMUST00000079590.7	3439	27	1644	5	1644	0	3prime_fragment	FALSE	canonical	2	6	junction_6	3.36837286056462	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATACATATGCGTATTTAT	NA	False	NA	17	True	AATAAA	-23	NA	127542682	127556804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127542794_127542995_127543043_127543222_127543287_127543486_127543586_127546018_127546123_127546242_127546391_127546746_127546866_127546952_127547040_127548452_127548519_127548631_127548737_127549589_127549653_127549853_127550055_127550194_127550422_127550749_127550951_127551118_127551213_127551500_127551651_127551745_127551815_127552156_127552232_127554380_127554516_127555119_127555227_127555501_127555635_127555736_127555890_127556021_127556150_127556461
ENSMUSG00000025401.10_3	chr10	+	2278	19	ISM	ENSMUSG00000025401.10	ENSMUST00000079590.7	3439	27	1642	2183	1642	-2178	internal_fragment	FALSE	canonical	2	6	junction_6	3.4029761846919	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTTGGACCGTTGGCA	NA	False	NA	NA	False	CATAAA	-15	NA	127542680	127554626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127542794_127542995_127543043_127543222_127543287_127543486_127543586_127546018_127546123_127546242_127546391_127546746_127546866_127546952_127547040_127548452_127548519_127548631_127548737_127549589_127549653_127549853_127550055_127550194_127550422_127550749_127550951_127551118_127551213_127551500_127551651_127551745_127551815_127552156_127552232_127554380
ENSMUSG00000025401.10_8	chr10	+	2811	21	ISM	ENSMUSG00000025401.10	ENSMUST00000079590.7	3439	27	2444	5	2444	0	3prime_fragment	FALSE	canonical	2	6	junction_3	3.278719262151	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATACATATGCGTATTTAT	NA	False	NA	17	True	AATAAA	-23	NA	127543482	127556804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127543586_127546018_127546123_127546242_127546391_127546746_127546866_127546952_127547040_127548452_127548519_127548631_127548737_127549589_127549653_127549853_127550055_127550194_127550422_127550749_127550951_127551118_127551213_127551500_127551651_127551745_127551815_127552156_127552232_127554380_127554516_127555119_127555227_127555501_127555635_127555736_127555890_127556021_127556150_127556461
ENSMUSG00000025402.13_0	chr10	-	2397	6	FSM	ENSMUSG00000025402.13	ENSMUST00000099157.4	2311	6	-89	3	-11	-3	multi-exon	FALSE	canonical	3	27	junction_1	16.4851448279959	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATCCATGGCCCCCTTCC	NA	False	NA	-5	True	AATAAA	-17	NA	127502590	127496790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127497649_127499000_127499134_127499218_127499271_127499608_127499743_127500133_127501008_127502244
ENSMUSG00000025402.13_1	chr10	-	2585	7	FSM	ENSMUSG00000025402.13	ENSMUST00000026469.9	2582	7	-7	4	-7	-3	multi-exon	FALSE	canonical	3	47	junction_1	9.00771274458111	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATCCATGGCCCCCTTCC	NA	False	NA	-5	True	AATAAA	-17	NA	127502586	127496790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127497649_127498599_127498792_127499000_127499134_127499218_127499271_127499608_127499743_127500133_127501008_127502244
ENSMUSG00000025402.13_2	chr10	-	1720	6	ISM	ENSMUSG00000025402.13	ENSMUST00000026469.9	2582	7	2097	2	868	-1	3prime_fragment	FALSE	canonical	3	47	junction_1	9.57914401186244	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCCATGGCCCCCTTCCCC	NA	False	NA	-3	True	AATAAA	-19	NA	127500482	127496788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127497649_127498599_127498792_127499000_127499134_127499218_127499271_127499608_127499743_127500133
ENSMUSG00000025403.6_0	chr10	-	2053	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	58	178	0	-178	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_12	chr10	-	2016	13	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	664.696672676091	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_127353627_127353654_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ENSMUSG00000025403.6_14	chr10	-	2044	12	FSM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	0	194	0	-178	multi-exon	FALSE	canonical	3	625	junction_11	417.657853565126	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ENSMUSG00000025403.6_2	chr10	-	2025	13	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.432940509673	954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_127353627_127353654_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025404.16_2	chr10	+	4127	25	NIC	ENSMUSG00000025404.16	novel	4281	27	NA	NA	-17	-4	combination_of_known_junctions	FALSE	canonical	3	158	junction_11	25.3408705892718	281	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATATAAAAAAAGCAAAAA	NA	False	NA	-18	True	NA	NA	NA	127216513	127335214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_127216806_127226179_127226297_127235994_127236063_127280144_127280345_127287860_127287903_127288560_127288648_127290498_127290626_127293518_127293598_127294007_127294068_127294678_127294820_127295335_127295445_127298056_127298153_127300850_127300883_127307636_127307870_127312388_127312568_127319844_127320088_127320374_127320502_127320730_127320892_127321284_127321440_127323643_127323745_127328437_127328608_127330889_127331038_127333030_127333129_127333409_127333495_127334237
ENSMUSG00000025404.16_5	chr10	+	4038	24	NIC	ENSMUSG00000025404.16	novel	4281	27	NA	NA	-24	-4	combination_of_known_junctions	TRUE	canonical	3	40	junction_11	41.0995379862634	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATATAAAAAAAGCAAAAA	NA	False	NA	-18	True	NA	NA	NA	127216506	127335214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_127216806_127226179_127226297_127235994_127236063_127280144_127280345_127287860_127287903_127288560_127288648_127290498_127290626_127293518_127293598_127294007_127294068_127294678_127294820_127295335_127295445_127300850_127300883_127307636_127307870_127312388_127312568_127319844_127320088_127320374_127320502_127320730_127320892_127321284_127321440_127323643_127323745_127328437_127328608_127330889_127331038_127333030_127333129_127333409_127333495_127334237
ENSMUSG00000025407.8_0	chr10	-	4189	12	NIC	ENSMUSG00000025407.8	novel	4057	13	NA	NA	59	-5	intron_retention	FALSE	canonical	2	10	junction_11	7.80972057996892	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGCATCACCTGTCATG	2885	False	NA	NA	False	AATAAA	-12	NA	127177696	127165755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127167670_127168269_127168535_127169436_127169668_127170067_127170233_127171831_127171982_127172280_127172419_127172507_127173027_127173258_127173464_127173940_127174034_127174289_127174416_127177073_127177188_127177427
ENSMUSG00000025407.8_10	chr10	-	2784	5	ISM	ENSMUSG00000025407.8	ENSMUST00000026474.5	4057	13	5801	7	882	-7	3prime_fragment	FALSE	canonical	3	24	junction_2	4.81534007106456	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAAGCATCACCTGTCA	8539	False	NA	NA	False	AATAAA	-10	NA	127172042	127165757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127167670_127168269_127168535_127169436_127169668_127170067_127170233_127171831
ENSMUSG00000025407.8_11	chr10	-	4350	11	NIC	ENSMUSG00000025407.8	novel	4057	13	NA	NA	197	-5	intron_retention	FALSE	canonical	2	10	junction_10	7.95298686029343	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGCATCACCTGTCATG	3023	False	NA	NA	False	AATAAA	-12	NA	127177558	127165755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127167670_127168269_127168535_127169436_127169668_127170067_127170233_127171831_127172419_127172507_127173027_127173258_127173464_127173940_127174034_127174289_127174416_127177073_127177188_127177427
ENSMUSG00000025407.8_2	chr10	-	3207	7	ISM	ENSMUSG00000025407.8	ENSMUST00000026474.5	4057	13	4995	2	76	-2	3prime_fragment	FALSE	canonical	3	18	junction_5	6.25610812637449	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCATCACCTGTCATGTTG	7733	False	NA	NA	False	AATAAA	-15	NA	127172848	127165752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127167670_127168269_127168535_127169436_127169668_127170067_127170233_127171831_127171982_127172280_127172419_127172507
ENSMUSG00000025407.8_22	chr10	-	3142	8	ISM	ENSMUSG00000025407.8	ENSMUST00000026474.5	4057	13	4769	9	-150	-9	3prime_fragment	FALSE	canonical	2	12	junction_7	7.54848275064166	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAACAAGCATCACCTGT	7507	False	NA	NA	False	AATAAA	-8	NA	127173074	127165759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127167670_127168269_127168535_127169436_127169668_127170067_127170233_127171831_127171982_127172280_127172419_127172507_127172598_127172881
ENSMUSG00000025407.8_3	chr10	-	4010	13	FSM	ENSMUSG00000025407.8	ENSMUST00000026474.5	4057	13	42	5	42	-5	multi-exon	FALSE	canonical	2	10	junction_12	8.16964231503164	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGCATCACCTGTCATG	2780	False	NA	NA	False	AATAAA	-12	NA	127177801	127165755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127167670_127168269_127168535_127169436_127169668_127170067_127170233_127171831_127171982_127172280_127172419_127172507_127172598_127172881_127173027_127173258_127173464_127173940_127174034_127174289_127174416_127177073_127177188_127177427
ENSMUSG00000025407.8_7	chr10	-	1351	1	ISM	ENSMUSG00000025407.8	ENSMUST00000026474.5	4057	13	10737	5	5818	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGCATCACCTGTCATG	9909	False	NA	NA	False	AATAAA	-12	NA	127167106	127165755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127165800_127167100
ENSMUSG00000025408.16_0	chr10	+	861	4	FSM	ENSMUSG00000025408.16	ENSMUST00000026475.15	890	4	25	4	5	-4	multi-exon	FALSE	canonical	0	0	junction_1	321.555593949165	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCCTCTCACTTTTTCT	NA	False	NA	25	True	AGTAAA	-14	NA	127126667	127132153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127126761_127129580_127129629_127131189_127131348_127131591
ENSMUSG00000025408.16_4	chr10	+	714	2	ISM	ENSMUSG00000025408.16	ENSMUST00000026475.15	890	4	4553	4	4533	-4	3prime_fragment	FALSE	canonical	3	714	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCCTCTCACTTTTTCT	1549	False	NA	25	True	AGTAAA	-14	NA	127131195	127132153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127131348_127131591
ENSMUSG00000025408.16_7	chr10	+	420	1	ISM	ENSMUSG00000025408.16	ENSMUST00000026475.15	890	4	5091	4	5071	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCCTCTCACTTTTTCT	2087	False	NA	25	True	AGTAAA	-14	NA	127131733	127132153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127131700_127132200
ENSMUSG00000025408.16_8	chr10	+	815	3	FSM	ENSMUSG00000025408.16	ENSMUST00000139091.2	600	3	4	-219	3	-4	multi-exon	FALSE	canonical	0	0	junction_1	357	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCCTCTCACTTTTTCT	NA	False	NA	25	True	AGTAAA	-14	NA	127126665	127132153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127126761_127131189_127131348_127131591
ENSMUSG00000025409.15_13	chr10	-	4258	13	NIC	ENSMUSG00000025409.15	novel	4287	13	NA	NA	30	-2	intron_retention	FALSE	canonical	3	41	junction_4	23.7748408103094	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCTGACTCTGTACTCA	NA	False	NA	-8	True	NA	NA	NA	127124857	127117826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119812_127119911_127120082_127120203_127120355_127120566_127121226_127121400_127122442_127122662_127122826_127122936_127123040_127123264_127123408_127123495_127123560_127124577
ENSMUSG00000025409.15_19	chr10	-	1546	5	ISM	ENSMUSG00000025409.15	ENSMUST00000119078.8	4287	13	4911	2	251	-2	3prime_fragment	FALSE	canonical	3	53	junction_4	29.227555491351	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCTGACTCTGTACTCA	1161	False	NA	-8	True	NA	NA	NA	127119976	127117826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119809_127119911
ENSMUSG00000025409.15_2	chr10	-	4248	13	NIC	ENSMUSG00000025409.15	novel	4287	13	NA	NA	40	-2	intron_retention	FALSE	canonical	3	40	junction_5	24.2206294073645	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCTGACTCTGTACTCA	NA	False	NA	-8	True	NA	NA	NA	127124847	127117826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119809_127119911_127120085_127120203_127120355_127120566_127121226_127121400_127122442_127122662_127122826_127122936_127123040_127123264_127123408_127123495_127123560_127124577
ENSMUSG00000025409.15_26	chr10	-	2289	7	ISM	ENSMUSG00000025409.15	ENSMUST00000026476.13	4165	13	3712	2	722	-2	3prime_fragment	FALSE	canonical	3	40	junction_5	35.1899606895679	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCTGACTCTGTACTCA	90	False	NA	-8	True	NA	NA	NA	127121047	127117826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119812_127119911_127120085_127120203_127120355_127120566
ENSMUSG00000025409.15_3	chr10	-	4256	13	FSM	ENSMUSG00000025409.15	ENSMUST00000119078.8	4287	13	31	0	31	0	multi-exon	FALSE	canonical	3	53	junction_4	21.7579806558932	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGACTCTGTACTCATT	NA	False	NA	-6	True	NA	NA	NA	127124856	127117824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119809_127119911_127120082_127120203_127120355_127120566_127121226_127121400_127122442_127122662_127122826_127122936_127123040_127123264_127123408_127123495_127123560_127124577
ENSMUSG00000025409.15_5	chr10	-	4245	13	FSM	ENSMUSG00000025409.15	ENSMUST00000026476.13	4165	13	-80	0	48	0	multi-exon	FALSE	canonical	3	40	junction_5	25.9994658064781	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGACTCTGTACTCATT	NA	False	NA	-6	True	NA	NA	NA	127124839	127117824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119812_127119911_127120085_127120203_127120355_127120566_127121226_127121400_127122442_127122662_127122826_127122936_127123040_127123264_127123408_127123495_127123560_127124577
ENSMUSG00000025409.15_53	chr10	-	2937	8	NIC	ENSMUSG00000025409.15	novel	4165	13	NA	NA	-104	-2	intron_retention	FALSE	canonical	3	40	junction_5	30.3617643540997	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCTGACTCTGTACTCA	NA	False	NA	-8	True	NA	NA	NA	127121873	127117826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119809_127119911_127120085_127120203_127120355_127120566_127121226_127121400
ENSMUSG00000025409.15_8	chr10	-	1201	4	ISM	ENSMUSG00000025409.15	ENSMUST00000026476.13	4165	13	5233	0	11	0	3prime_fragment	FALSE	canonical	3	104	junction_2	11.6714276000077	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGACTCTGTACTCATT	1611	False	NA	-6	True	NA	NA	NA	127119526	127117824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394
ENSMUSG00000025410.11_0	chr10	+	1640	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	0	144	0	-144	multi-exon	FALSE	canonical	3	604	junction_8	36.9826442582377	711	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTCTGCTGTGTTCCTGG	9216	False	NA	22	True	ATTAAA	-17	NA	127102255	127117675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
ENSMUSG00000025413.14_0	chr4	-	2066	10	FSM	ENSMUSG00000025413.14	ENSMUST00000026480.13	2121	10	46	9	3	-5	multi-exon	FALSE	canonical	3	276	junction_4	15.561903466677	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGAGATCTTGTGTTGT	NA	False	NA	-8	True	ATTAAA	-32	NA	106536095	106519461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_106520429_106522852_106522936_106524692_106524775_106525233_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
ENSMUSG00000025413.14_3	chr4	-	2526	9	NIC	ENSMUSG00000025413.14	novel	2121	10	NA	NA	4	-3	intron_retention	TRUE	canonical	3	276	junction_3	16.3893067272536	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGATCTTGTGTTGTTT	NA	False	NA	-6	True	ATTAAA	-34	NA	106536094	106519459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_106520429_106522852_106522936_106524692_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
ENSMUSG00000025417.9_0	chr10	-	3321	10	FSM	ENSMUSG00000025417.9	ENSMUST00000013970.9	3307	10	-20	6	10	-6	multi-exon	FALSE	canonical	3	316	junction_3	43.7148447820759	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCATTCACAGAAGTTTT	NA	False	NA	-10	True	AATAAA	-17	NA	127047444	127032941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
ENSMUSG00000025417.9_1	chr10	-	1497	1	ISM	ENSMUSG00000025417.9	ENSMUST00000013970.9	3307	10	12986	6	12986	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCATTCACAGAAGTTTT	NA	False	NA	-10	True	AATAAA	-17	NA	127034438	127032941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127032900_127034400
ENSMUSG00000025418.8_0	chr4	-	1590	1	ISM	ENSMUSG00000025418.8	ENSMUST00000054472.4	2756	4	7232	6	7232	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAAGGTCACCTTTATTC	NA	False	NA	NA	False	NA	NA	NA	106342248	106340658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_106340700_106342200
ENSMUSG00000025418.8_1	chr4	-	2796	4	FSM	ENSMUSG00000025418.8	ENSMUST00000054472.4	2756	4	-50	10	-50	-10	multi-exon	FALSE	canonical	2	6	junction_2	0.942809041582063	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTCAAAAGGTCACCTTT	NA	False	NA	NA	False	NA	NA	NA	106349530	106340662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_106342643_106343780_106344036_106345175_106345268_106349061
ENSMUSG00000025420.14_2	chr18	-	1938	16	NNC	ENSMUSG00000025420.14	novel	1942	16	NA	NA	14044	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	8.22732574345327	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTCCTGTGTTTCTCCT	NA	False	NA	NA	False	TATAAA	-10	NA	77120895	77064848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_77065222_77066125_77066229_77067694_77067858_77082089_77082201_77085294_77085387_77090126_77090246_77090432_77090497_77092418_77092518_77095203_77095282_77095480_77095580_77098642_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
ENSMUSG00000025420.14_5	chr18	-	1587	6	NNC	ENSMUSG00000025420.14	novel	1674	14	NA	NA	13997	-3	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	3.26190128606002	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTATTTCTGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	77120942	77097739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
ENSMUSG00000025421.16_0	chr18	+	1536	7	FSM	ENSMUSG00000025421.16	ENSMUST00000097522.11	5477	7	34	3907	-1	-5	multi-exon	FALSE	canonical	0	0	junction_2	128.264050562372	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATGTTTTAATTAGACA	NA	False	NA	14	True	NA	NA	NA	77031821	77059096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUSG00000025421.16_10	chr18	+	1584	7	FSM	ENSMUSG00000025421.16	ENSMUST00000150990.9	3126	7	40	1502	-13	-5	multi-exon	FALSE	canonical	0	0	junction_2	156.505235979148	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATGTTTTAATTAGACA	NA	False	NA	14	True	NA	NA	NA	77032119	77059096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_77032228_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUSG00000025421.16_11	chr18	+	1585	7	FSM	ENSMUSG00000025421.16	ENSMUST00000148955.3	3069	7	-18	1502	-18	-5	multi-exon	FALSE	canonical	0	0	junction_2	159.414292542001	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATGTTTTAATTAGACA	NA	False	NA	14	True	NA	NA	NA	77032114	77059096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_77032224_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUSG00000025423.17_16	chr18	+	2904	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26648	98	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	731	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTATGTTTAAGAATAC	6437	False	NA	16	True	AGTAAA	-24	NA	77126255	77241130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ENSMUSG00000025423.17_17	chr18	+	2151	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26651	-133	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	307	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGAAAAGAGCTTGATTC	6434	False	NA	10	True	AATAAA	-20	NA	77126252	77234500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ENSMUSG00000025423.17_70	chr18	+	2667	14	FSM	ENSMUSG00000025423.17	ENSMUST00000114777.10	3060	14	26	367	-11	97	multi-exon	FALSE	canonical	3	372	junction_1	299.077338556217	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAATTATGTTTAAGAATA	7925	False	NA	15	True	AGTAAA	-23	NA	77152929	77241129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ENSMUSG00000025423.17_72	chr18	+	1905	13	NIC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-4	-133	combination_of_known_junctions	FALSE	canonical	3	372	junction_1	338.465163150754	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGAAAAGAGCTTGATTC	7932	False	NA	10	True	AATAAA	-20	NA	77152936	77234500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ENSMUSG00000025427.16_2	chr18	-	1862	8	FSM	ENSMUSG00000025427.16	ENSMUST00000026494.14	7300	8	-168	5606	-143	1177	multi-exon	FALSE	canonical	3	20	junction_2	6.65168384389875	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGCGAAAAGAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	77653000	77549411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_77550146_77550579_77550687_77554372_77554469_77554630_77554736_77555936_77556067_77563169_77563281_77571844_77572161_77652737
ENSMUSG00000025428.16_0	chr18	+	1848	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	270	353	7	-139	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	7251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTGTGGGGGTGGGCT	NA	False	NA	31	True	AATAAA	-19	NA	77861698	77870216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ENSMUSG00000025429.10_0	chr18	+	3315	17	NNC	ENSMUSG00000025429.10	novel	2267	15	NA	NA	5	875	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	10.3493659226061	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTAATTTGTATTCTTG	2215	False	NA	NA	False	AATAAA	-17	NA	77877618	77971454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_77877687_77882004_77882171_77882305_77882451_77922824_77922926_77934078_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
ENSMUSG00000025429.10_12	chr18	+	2637	9	ISM	ENSMUSG00000025429.10	ENSMUST00000114741.4	2267	15	75718	-876	75718	876	3prime_fragment	FALSE	canonical	3	30	junction_2	5.23061898822692	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAATTTGTATTCTTGT	9111	False	NA	NA	False	AATAAA	-18	NA	77957962	77971455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
ENSMUSG00000025429.10_22	chr18	+	2890	13	ISM	ENSMUSG00000025429.10	ENSMUST00000114741.4	2267	15	51780	-876	51780	876	3prime_fragment	FALSE	canonical	3	30	junction_3	4.83045891539648	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAATTTGTATTCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	77934024	77971455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
ENSMUSG00000025429.10_3	chr18	+	3005	15	NIC	ENSMUSG00000025429.10	novel	1056	14	NA	NA	5	876	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	7.97860659923186	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAATTTGTATTCTTGT	2215	False	NA	NA	False	AATAAA	-18	NA	77877618	77971455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_77877687_77922824_77922926_77934078_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
ENSMUSG00000025436.13_0	chr10	-	882	6	FSM	ENSMUSG00000025436.13	ENSMUST00000026504.13	903	6	18	3	11	-3	multi-exon	FALSE	canonical	3	15	junction_1	67.2767418949521	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATCTGTTTGACACATT	NA	False	NA	-29	True	AATAAA	-16	NA	126737206	126704298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_126704595_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
ENSMUSG00000025436.13_1	chr10	-	1032	6	FSM	ENSMUSG00000025436.13	ENSMUST00000168520.3	1043	6	6	5	6	-5	multi-exon	FALSE	canonical	3	157	junction_1	12.3515181253156	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTATACTTATTTTTTGG	NA	False	NA	-5	True	AATAAA	-20	NA	126737211	126723122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_126723564_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
ENSMUSG00000025437.16_4	chr3	+	3868	24	FSM	ENSMUSG00000025437.16	ENSMUST00000197748.5	4183	24	24	291	1	-7	multi-exon	FALSE	canonical	3	245	junction_13	66.1683137664235	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGTATAAACTGAATGT	NA	False	NA	NA	False	AATAAA	-10	NA	152052149	152098963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
ENSMUSG00000025437.16_6	chr3	+	3843	24	FSM	ENSMUSG00000025437.16	ENSMUST00000117492.9	3886	24	36	7	-1	-7	multi-exon	FALSE	canonical	3	273	junction_13	62.1055263911158	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGTATAAACTGAATGT	NA	False	NA	NA	False	AATAAA	-10	NA	152052150	152098963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
ENSMUSG00000025439.6_0	chr7	+	1461	7	FSM	ENSMUSG00000025439.6	ENSMUST00000026506.5	1504	7	39	4	-22	-4	multi-exon	FALSE	canonical	3	1088	junction_4	64.1950153828161	981	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATATCGCTGTGATTTTG	NA	False	NA	7	True	AATAAA	-13	NA	97345879	97368082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425
ENSMUSG00000025451.16_1	chr13	+	1619	11	FSM	ENSMUSG00000025451.16	ENSMUST00000109203.9	1525	11	-102	8	-102	-8	multi-exon	FALSE	canonical	3	93	junction_1	94.7694043454954	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAATTTTGCTAGCTG	NA	False	NA	101	True	AATAAA	-28	NA	119565034	119593919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_119565177_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ENSMUSG00000025451.16_13	chr13	+	2099	11	NNC	ENSMUSG00000025451.16	novel	1731	11	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	104.451376247515	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAATTTTGCTAGCTG	NA	False	NA	101	True	AATAAA	-28	NA	119565464	119593919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_119566087_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ENSMUSG00000025451.16_7	chr13	+	1715	11	FSM	ENSMUSG00000025451.16	ENSMUST00000026520.14	2551	11	1	835	1	-8	multi-exon	FALSE	canonical	3	177	junction_1	70.3985795311241	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAATTTTGCTAGCTG	NA	False	NA	101	True	AATAAA	-28	NA	119565458	119593919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_119565697_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ENSMUSG00000025451.16_9	chr13	+	1959	11	FSM	ENSMUSG00000025451.16	ENSMUST00000126957.9	1731	11	-202	-26	9	-8	multi-exon	FALSE	canonical	3	84	junction_1	97.4055953218294	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAATTTTGCTAGCTG	NA	False	NA	101	True	AATAAA	-28	NA	119565466	119593919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_119565949_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ENSMUSG00000025453.19_1	chr13	-	3329	17	NNC	ENSMUSG00000025453.19	novel	3464	17	NA	NA	3	-87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	55.0277983727316	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGATGTAGCTTCGTC	NA	False	NA	NA	False	AATAAA	-10	NA	119545530	119472070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511266_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
ENSMUSG00000025453.19_22	chr13	-	3354	17	NNC	ENSMUSG00000025453.19	novel	3464	17	NA	NA	3	-87	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	55.0277983727316	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGATGTAGCTTCGTC	NA	False	NA	NA	False	AATAAA	-10	NA	119545530	119472070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511291_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
ENSMUSG00000025453.19_57	chr13	-	3329	17	NNC	ENSMUSG00000025453.19	novel	3464	17	NA	NA	3	-89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	55.0277983727316	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTGATGTAGCTTCG	NA	False	NA	NA	False	AATAAA	-8	NA	119545530	119472072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511268_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
ENSMUSG00000025453.19_6	chr13	-	3348	17	NNC	ENSMUSG00000025453.19	novel	3464	17	NA	NA	3	-88	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	55.0277983727316	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTGATGTAGCTTCGT	NA	False	NA	NA	False	AATAAA	-9	NA	119545530	119472071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511286_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
ENSMUSG00000025453.19_68	chr13	-	1886	4	FSM	ENSMUSG00000025453.19	ENSMUST00000144599.2	1885	4	0	-1	0	1	multi-exon	FALSE	canonical	3	169	junction_3	27.3536509852382	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCGTTGAGACTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	119545533	119530006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_119531365_119533282_119533513_119541087_119541291_119545438
ENSMUSG00000025453.19_7	chr13	-	3344	17	NNC	ENSMUSG00000025453.19	novel	3464	17	NA	NA	3	-88	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	55.0277983727316	107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTGATGTAGCTTCGT	NA	False	NA	NA	False	AATAAA	-9	NA	119545530	119472071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511282_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
ENSMUSG00000025453.19_8	chr13	-	2267	10	ISM	ENSMUSG00000116207.2	ENSMUST00000223268.2	3339	17	34176	8	34176	-8	3prime_fragment	FALSE	canonical	3	169	junction_9	19.0496427496394	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTGATGTAGCTTCGT	NA	False	NA	NA	False	AATAAA	-9	NA	119511312	119472071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164
ENSMUSG00000025464.16_0	chr7	+	1736	7	FSM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	27	2892	-24	-2	multi-exon	FALSE	canonical	3	213	junction_2	25.7552583627758	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTTGTGTAGAGTACTT	NA	False	NA	20	True	CATAAA	-12	NA	139705596	139714245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_139705796_139706238_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
ENSMUSG00000025464.16_3	chr7	+	1554	6	ISM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	652	2892	601	-2	3prime_fragment	FALSE	canonical	3	213	junction_1	25.4165300542777	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTTGTGTAGAGTACTT	NA	False	NA	20	True	CATAAA	-12	NA	139706221	139714245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
ENSMUSG00000025465.14_0	chr7	-	1486	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	61	10	0	-2	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	1443	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCCGTAACTATTTGTGT	NA	False	NA	-11	True	NA	NA	NA	139696328	139685632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
ENSMUSG00000025466.20_0	chr7	-	777	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	162.288138814887	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTCATGAACTTGTCTTG	1594	False	NA	-11	True	NA	NA	NA	139682231	139679393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681993
ENSMUSG00000025466.20_2	chr7	-	529	6	FSM	ENSMUSG00000025466.20	ENSMUST00000142105.8	536	6	3	4	2	0	multi-exon	FALSE	canonical	3	39	junction_1	173.251262621662	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTGTCTTGTGGTGAG	1539	False	NA	-4	True	NA	NA	NA	139682286	139679386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_139679536_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
ENSMUSG00000025466.20_3	chr7	-	620	6	FSM	ENSMUSG00000025466.20	ENSMUST00000026539.14	685	6	54	11	-11	-7	multi-exon	FALSE	canonical	3	247	junction_5	86.8506764510214	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTCATGAACTTGTCTTG	1525	False	NA	-11	True	NA	NA	NA	139682300	139679393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
ENSMUSG00000025466.20_5	chr7	-	721	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-10	-7	combination_of_known_junctions	FALSE	canonical	3	140	junction_5	128.971934931597	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTCATGAACTTGTCTTG	1936	False	NA	-11	True	NA	NA	NA	139681889	139679393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681707
ENSMUSG00000025466.20_7	chr7	-	893	5	NIC	ENSMUSG00000025466.20	novel	1685	6	NA	NA	-10	-7	combination_of_known_junctions	FALSE	canonical	3	140	junction_4	143.095029613191	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTCATGAACTTGTCTTG	1936	False	NA	-11	True	NA	NA	NA	139681889	139679393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681707
ENSMUSG00000025466.20_9	chr7	-	834	5	ISM	ENSMUSG00000025466.20	ENSMUST00000120034.8	680	6	-26	2711	12	-7	5prime_fragment	FALSE	canonical	3	247	junction_4	96.9278081873308	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTCATGAACTTGTCTTG	1483	False	NA	-11	True	NA	NA	NA	139682342	139679393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
ENSMUSG00000025467.9_0	chr7	+	615	5	FSM	ENSMUSG00000025467.9	ENSMUST00000026540.9	620	5	2	3	2	-3	multi-exon	FALSE	canonical	3	31	junction_4	1.08972473588517	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAGGAATGCGTGTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	139673309	139677110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_139673382_139674944_139675012_139676062_139676116_139676586_139676694_139676794
ENSMUSG00000025468.16_0	chr7	-	647	2	ISM	ENSMUSG00000025468.16	ENSMUST00000211044.2	1029	6	11417	5	11417	1	3prime_fragment	FALSE	canonical	3	34	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGGGTCGTGGTTTCTCT	9456	False	NA	-6	True	AGTAAA	-12	NA	139650723	139649798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_139649947_139650224
ENSMUSG00000025470.12_0	chr7	+	1064	6	FSM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	10	2	10	1	multi-exon	FALSE	canonical	3	304	junction_1	28.032837887021	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCATCTGTTCTTCTTCA	NA	False	NA	17	True	AATAAA	-14	NA	139616334	139620513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
ENSMUSG00000025470.12_10	chr7	+	997	5	NIC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	2	11	junction_1	147.438758472798	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCATCTGTTCTTCTT	NA	False	NA	15	True	AATAAA	-12	NA	139616325	139620511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_139616520_139617132_139617335_139617428_139617554_139619238_139619359_139620155
ENSMUSG00000025470.12_11	chr7	+	902	5	ISM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	385	2	8	1	3prime_fragment	FALSE	canonical	3	319	junction_3	26.6176633084123	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCATCTGTTCTTCTTCA	NA	False	NA	17	True	AATAAA	-14	NA	139616709	139620513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
ENSMUSG00000025470.12_5	chr7	+	1005	6	NNC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_4	120.382058463876	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCATCTGTTCTTCTTCA	NA	False	NA	17	True	AATAAA	-14	NA	139616334	139620513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617495_139619238_139619359_139620155
ENSMUSG00000025470.12_6	chr7	+	1861	5	FSM	ENSMUSG00000025470.12	ENSMUST00000210882.2	1757	5	-108	4	8	-1	multi-exon	FALSE	canonical	3	304	junction_1	31.3318926973779	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCATCTGTTCTTCTT	NA	False	NA	15	True	AATAAA	-12	NA	139616332	139620511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238
ENSMUSG00000025474.10_1	chr7	-	2806	18	FSM	ENSMUSG00000025474.10	ENSMUST00000211638.2	3060	18	300	-46	21	-6	multi-exon	FALSE	canonical	3	194	junction_17	64.0289186395126	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGCTGTTGTGCATTA	NA	False	NA	NA	False	NA	NA	NA	139616282	139575914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259
ENSMUSG00000025474.10_2	chr7	-	2994	18	FSM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	-40	6	23	-6	multi-exon	FALSE	canonical	3	147	junction_17	73.93539684464	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGCTGTTGTGCATTA	NA	False	NA	NA	False	NA	NA	NA	139616219	139575914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
ENSMUSG00000025474.10_4	chr7	-	2789	17	ISM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	2466	2	-23	-2	3prime_fragment	FALSE	canonical	3	352	junction_11	31.5017360632712	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTTGTGCATTATTAC	NA	False	NA	NA	False	NA	NA	NA	139613713	139575910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525
ENSMUSG00000025477.15_0	chr7	+	2830	16	FSM	ENSMUSG00000025477.15	ENSMUST00000106098.8	2826	16	-10	6	-10	-6	multi-exon	TRUE	canonical	3	132	junction_13	16.0850517216728	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGTTCCTGCTGCTTA	NA	False	NA	13	True	AATAAA	-14	NA	138969014	139159562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_138969381_139033969_139034012_139057910_139058012_139061547_139061636_139091323_139091388_139096546_139096651_139103752_139103806_139105577_139105698_139118094_139118180_139138789_139138886_139138979_139139055_139147279_139147354_139154859_139154972_139157265_139157335_139158097_139158186_139158269
ENSMUSG00000025477.15_7	chr7	+	2777	16	FSM	ENSMUSG00000025477.15	ENSMUST00000026550.14	2774	16	-9	6	-8	-6	multi-exon	FALSE	canonical	3	14	junction_15	41.2685513839938	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGTTCCTGCTGCTTA	NA	False	NA	13	True	AATAAA	-14	NA	138969016	139159562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_138969381_139033969_139034012_139057910_139058012_139061547_139061636_139091323_139091388_139096546_139096651_139103752_139103806_139105577_139105698_139118094_139118180_139138789_139138886_139138979_139139055_139147279_139147354_139154859_139154972_139157265_139157335_139158097_139158135_139158269
ENSMUSG00000025478.16_0	chr7	+	2602	14	FSM	ENSMUSG00000025478.16	ENSMUST00000026551.15	3552	14	11	939	10	-12	multi-exon	FALSE	canonical	1	1	junction_6	3.36181128975572	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	138665927	138681681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_138666078_138669425_138669515_138670074_138670260_138671777_138671943_138673521_138673584_138673676_138673758_138674309_138674379_138674772_138674894_138676083_138676241_138676582_138676725_138677737_138677909_138678385_138678566_138679655_138679822_138680817
ENSMUSG00000025479.10_0	chr7	+	176	1	ISM	ENSMUSG00000025479.10	ENSMUST00000026552.9	1833	9	11061	6	10319	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATGCCAAGCATATGG	1146	False	NA	NA	False	NA	NA	NA	140354712	140354888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140354700_140354900
ENSMUSG00000025480.6_0	chr7	-	1447	13	FSM	ENSMUSG00000025480.6	ENSMUST00000026553.6	1460	13	11	2	-4	-2	multi-exon	FALSE	canonical	3	141	junction_11	16.7779617355625	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGGTCTATATTGTGTG	NA	False	NA	-2	True	AATAAA	-16	NA	140367754	140357143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140361939_140362003_140367648
ENSMUSG00000025480.6_10	chr7	-	1411	12	NIC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	2	4	junction_8	48.9449007127926	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGTCTATATTGTGTGT	NA	False	NA	-1	True	AATAAA	-17	NA	140367765	140357142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140360369_140360445_140360787_140360848_140361939_140362003_140367648
ENSMUSG00000025480.6_15	chr7	-	1200	9	NIC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-5	-4	combination_of_known_splicesites	FALSE	canonical	3	17	junction_8	52.9526616422631	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTGGTCTATATTGTG	NA	False	NA	-4	True	AATAAA	-14	NA	140367755	140357145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140367648
ENSMUSG00000025480.6_7	chr7	-	1384	12	NIC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	14	junction_11	47.3902385596844	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGGTCTATATTGTGTG	NA	False	NA	-2	True	AATAAA	-16	NA	140367754	140357143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140367648
ENSMUSG00000025481.13_0	chr7	+	674	4	FSM	ENSMUSG00000025481.13	ENSMUST00000106050.8	719	4	123	-78	123	-1	multi-exon	FALSE	canonical	3	242	junction_1	5.43650214343336	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAATCTGAACCTATCAT	NA	False	NA	26	True	AATAAA	-16	NA	140415053	140417878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140415172_140415524_140415665_140416659_140416796_140417598
ENSMUSG00000025481.13_1	chr7	+	812	4	NIC	ENSMUSG00000025481.13	novel	719	4	NA	NA	88	-1	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	111.547697819762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAATCTGAACCTATCAT	NA	False	NA	26	True	AATAAA	-16	NA	140415018	140417878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140415172_140415524_140415665_140416659_140416796_140417495
ENSMUSG00000025481.13_3	chr7	+	889	3	FSM	ENSMUSG00000025481.13	ENSMUST00000026554.11	890	3	0	1	0	-1	multi-exon	FALSE	canonical	3	251	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAATCTGAACCTATCAT	NA	False	NA	26	True	AATAAA	-16	NA	140415191	140417878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140415665_140416659_140416796_140417598
ENSMUSG00000025484.10_0	chr7	-	1547	5	ISM	ENSMUSG00000025484.10	ENSMUST00000211624.2	769	7	1083	-962	5	-16	3prime_fragment	FALSE	canonical	1	1	junction_4	52.5404605994276	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGAAGTTCCGTGCCC	NA	False	NA	-26	True	CATAAA	-15	NA	140436192	140433322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_140434537_140434677_140434735_140434986_140435079_140435718_140435844_140436133
ENSMUSG00000025484.10_1	chr7	-	2168	4	NIC	ENSMUSG00000110136.2	novel	988	5	NA	NA	71	-35323	intron_retention	FALSE	canonical	1	1	junction_3	50.2460612054982	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGAAGTTCCGTGCCC	NA	False	NA	-26	True	CATAAA	-15	NA	140436173	140433322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140434537_140434677_140434735_140434986_140435844_140436133
ENSMUSG00000025484.10_2	chr7	-	2873	1	FSM	ENSMUSG00000025484.10	ENSMUST00000210157.2	1882	1	-13	-978	1	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTATGAAGTTCCGTGCC	NA	False	NA	-27	True	CATAAA	-14	NA	140436196	140433323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140433300_140436200
ENSMUSG00000025484.10_3	chr7	-	1538	4	FSM	ENSMUSG00000025484.10	ENSMUST00000209320.2	386	4	38	-1190	5	-16	multi-exon	FALSE	canonical	0	0	junction_2	52.0917993119412	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGAAGTTCCGTGCCC	NA	False	NA	-26	True	CATAAA	-15	NA	140436192	140433322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140434537_140434677_140434851_140434986_140435079_140436133
ENSMUSG00000025484.10_4	chr7	-	1589	5	NIC	ENSMUSG00000025484.10	novel	769	7	NA	NA	262	-3	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	46.2439185190875	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCCCGTCTCTATGTCTG	NA	False	NA	-13	True	CATAAA	-28	NA	140436760	140433309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140434537_140434677_140434735_140434986_140435079_140436133_140436263_140436676
ENSMUSG00000025485.14_0	chr7	+	2355	10	FSM	ENSMUSG00000025485.14	ENSMUST00000026558.7	3406	10	463	588	-2	-1	multi-exon	FALSE	canonical	3	213	junction_2	23.6648408268052	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGTTTAACATTCATGA	NA	False	NA	8	True	ATTAAA	-15	NA	140437332	140443055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140437468_140437757_140437806_140437894_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
ENSMUSG00000025485.14_4	chr7	+	2645	9	NIC	ENSMUSG00000025485.14	novel	3406	10	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	213	junction_1	24.9446261747896	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGTTTAACATTCATGA	NA	False	NA	8	True	ATTAAA	-15	NA	140437332	140443055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140437806_140437894_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
ENSMUSG00000025486.18_1	chr7	-	1373	7	FSM	ENSMUSG00000025486.18	ENSMUST00000106048.10	1416	7	38	5	-4	-5	multi-exon	FALSE	canonical	3	125	junction_6	42.0135560133737	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTTGGCATCCTGTCT	NA	False	NA	-19	True	AATAAA	-9	NA	140461744	140443587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140461675
ENSMUSG00000025486.18_2	chr7	-	3649	6	ISM	ENSMUSG00000025486.18	ENSMUST00000106048.10	1416	7	1386	-2	1344	-2	3prime_fragment	FALSE	canonical	3	226	junction_4	7.05974503788912	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCATCCTGTCTCTTTGGG	NA	False	NA	-12	True	AATAAA	-16	NA	140460396	140443580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869
ENSMUSG00000025486.18_3	chr7	-	1373	7	NIC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	-12	-5	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	62.3475919520732	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTTGGCATCCTGTCT	NA	False	NA	-19	True	AATAAA	-9	NA	140461752	140443587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458051_140461675
ENSMUSG00000025486.18_5	chr7	-	1411	7	FSM	ENSMUSG00000025486.18	ENSMUST00000026559.14	1461	7	45	5	25	-5	multi-exon	FALSE	canonical	3	24	junction_6	79.4187215543875	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTTGGCATCCTGTCT	NA	False	NA	-19	True	AATAAA	-9	NA	140462177	140443587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140462070
ENSMUSG00000025486.18_6	chr7	-	1280	7	NIC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	-5	-5	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	76.8188706561668	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTTGGCATCCTGTCT	NA	False	NA	-19	True	AATAAA	-9	NA	140461745	140443587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140457965_140461675
ENSMUSG00000025486.18_7	chr7	-	2365	2	ISM	ENSMUSG00000025486.18	ENSMUST00000106048.10	1416	7	14939	5	10116	-5	3prime_fragment	FALSE	canonical	3	237	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTTGGCATCCTGTCT	NA	False	NA	-19	True	AATAAA	-9	NA	140446843	140443587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_140443997_140444887
ENSMUSG00000025487.16_0	chr7	+	1542	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	447	0	1	0	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	1078	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	28	True	AATAAA	-16	NA	140462327	140478555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
ENSMUSG00000025491.15_1	chr7	+	593	2	FSM	ENSMUSG00000025491.15	ENSMUST00000026564.9	736	2	130	13	130	-13	multi-exon	FALSE	canonical	3	1139	junction_1	0	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTCTGCCCCTGGACTAG	NA	False	NA	11	True	AATAAA	-15	NA	140548082	140549725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140548352_140549401
ENSMUSG00000025492.7_0	chr7	-	627	2	FSM	ENSMUSG00000025492.7	ENSMUST00000026565.7	678	2	46	5	46	-5	multi-exon	FALSE	canonical	3	1854	junction_1	0	431	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCTATGACTGCTTTTAT	NA	False	NA	-3	True	AATAAA	-18	NA	140590637	140589503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140589803_140590309
ENSMUSG00000025494.9_15	chr7	-	1925	9	FSM	ENSMUSG00000025494.9	ENSMUST00000210167.2	1897	9	-28	0	-6	0	multi-exon	FALSE	canonical	3	23	junction_8	41.6921380478382	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140680465	140671087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
ENSMUSG00000025494.9_2	chr7	-	2071	9	NIC	ENSMUSG00000025494.9	novel	1897	9	NA	NA	-100	0	intron_retention	FALSE	canonical	3	90	junction_8	21.1527185014125	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676752	140671087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
ENSMUSG00000025494.9_26	chr7	-	1825	10	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-95	0	combination_of_known_junctions	TRUE	canonical	3	15	junction_9	41.7703894176098	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676747	140671087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676472
ENSMUSG00000025494.9_4	chr7	-	1629	10	FSM	ENSMUSG00000025494.9	ENSMUST00000209294.2	1612	10	-15	-2	-11	0	multi-exon	FALSE	canonical	3	23	junction_9	39.3474550920669	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140680470	140671087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
ENSMUSG00000025494.9_9	chr7	-	1768	10	NIC	ENSMUSG00000025494.9	novel	1612	10	NA	NA	-99	-1	combination_of_known_splicesites	FALSE	canonical	3	90	junction_9	19.9616917069288	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGGCTTATTTCTGTCT	NA	False	NA	-31	True	AATAAA	-16	NA	140676751	140671088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
ENSMUSG00000025495.16_0	chr7	+	2128	12	FSM	ENSMUSG00000025495.16	ENSMUST00000026568.10	3624	12	44	1452	-14	552	multi-exon	FALSE	canonical	3	293	junction_1	17.146910185967	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	6854	False	NA	11	True	AATAAA	-16	NA	140711242	140736067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
ENSMUSG00000025495.16_6	chr7	+	2002	12	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	-15	552	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	88.9139243899021	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	6853	False	NA	11	True	AATAAA	-16	NA	140711241	140736067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734850_140734910_140735246
ENSMUSG00000025496.6_0	chr7	+	1299	4	FSM	ENSMUSG00000025496.6	ENSMUST00000026569.6	2799	4	-7	1507	-7	864	multi-exon	FALSE	canonical	1	2	junction_1	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATGAAGGCTGGGGGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	140871911	140874870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140872227_140873625_140873739_140873825_140874398_140874571
ENSMUSG00000025499.19_0	chr7	-	1196	5	FSM	ENSMUSG00000025499.19	ENSMUST00000097957.11	1199	5	0	3	0	1	multi-exon	FALSE	canonical	3	437	junction_1	76.3392919799496	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGTCTCTGGCTGGAA	NA	False	NA	-5	True	AGTAAA	-15	NA	140773918	140770841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
ENSMUSG00000025499.19_1	chr7	-	1271	6	FSM	ENSMUSG00000025499.19	ENSMUST00000168550.8	2272	6	6	995	-4	1	multi-exon	FALSE	canonical	3	72	junction_2	252.24797323269	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGTCTCTGGCTGGAA	NA	False	NA	-5	True	AGTAAA	-15	NA	140773911	140770841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140771381_140771867_140771950_140772043_140772204_140772354_140772534_140772742_140772895_140773752
ENSMUSG00000025499.19_2	chr7	-	1134	7	NIC	ENSMUSG00000025499.19	novel	2272	6	NA	NA	-3	1	combination_of_known_junctions	FALSE	canonical	3	72	junction_3	236.49154318918	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGTCTCTGGCTGGAA	NA	False	NA	-5	True	AGTAAA	-15	NA	140773921	140770841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140771108_140771254_140771381_140771867_140771950_140772043_140772204_140772354_140772534_140772742_140772895_140773752
ENSMUSG00000025499.19_3	chr7	-	1051	6	FSM	ENSMUSG00000025499.19	ENSMUST00000026572.11	2828	6	-47	1824	-2	1	multi-exon	FALSE	canonical	3	237	junction_1	141.994366085419	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGTCTCTGGCTGGAA	NA	False	NA	-5	True	AGTAAA	-15	NA	140773920	140770841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140771108_140771254_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
ENSMUSG00000025499.19_4	chr7	-	1052	6	NIC	ENSMUSG00000025499.19	novel	2828	6	NA	NA	-15	1	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	225.486496269732	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGTCTCTGGCTGGAA	NA	False	NA	-5	True	AGTAAA	-15	NA	140773888	140770841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140771141_140771254_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
ENSMUSG00000025503.6_1	chr7	+	1243	8	FSM	ENSMUSG00000025503.6	ENSMUST00000026576.5	1229	8	-15	1	-15	-1	multi-exon	FALSE	canonical	3	3267	junction_3	222.11993450864	2101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTGTTTCATTTCACCGT	3825	False	NA	17	True	ATTAAA	-16	NA	140972096	140982880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140972232_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
ENSMUSG00000025503.6_32	chr7	+	196	1	ISM	ENSMUSG00000025503.6	ENSMUST00000211654.2	1362	9	10572	0	2617	0	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTGTTTCATTTCACCG	6285	False	NA	16	True	ATTAAA	-15	NA	140982683	140982879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140982700_140982900
ENSMUSG00000025504.15_0	chr7	+	3076	21	FSM	ENSMUSG00000025504.15	ENSMUST00000026577.13	3191	21	110	5	3	-5	multi-exon	TRUE	canonical	3	69	junction_6	10.2434125173206	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAACTTAGATATCTGTTT	NA	False	NA	2	True	AATAAA	-14	NA	140918902	140942928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140918972_140921805_140921888_140921967_140922024_140922838_140922904_140934858_140935021_140935557_140935708_140935782_140935863_140936004_140936154_140936237_140936309_140936449_140936577_140936959_140937049_140937154_140937230_140937455_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
ENSMUSG00000025504.15_22	chr7	+	2344	14	ISM	ENSMUSG00000025504.15	ENSMUST00000026577.13	3191	21	17280	5	-1836	-5	3prime_fragment	FALSE	canonical	3	76	junction_12	9.1954452321653	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAACTTAGATATCTGTTT	NA	False	NA	2	True	AATAAA	-14	NA	140936072	140942928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140936154_140936237_140936309_140936449_140936577_140936959_140937049_140937154_140937230_140937455_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
ENSMUSG00000025504.15_5	chr7	+	3300	20	FSM	ENSMUSG00000025504.15	ENSMUST00000140025.8	3341	20	39	2	8	-2	multi-exon	FALSE	canonical	3	69	junction_6	10.3329610036278	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAGATATCTGTTTCTT	NA	False	NA	5	True	AATAAA	-17	NA	140918907	140942931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140918972_140921805_140921888_140921967_140922024_140922838_140922904_140934858_140935021_140935557_140935708_140935782_140935863_140936004_140936154_140936237_140936309_140936449_140936577_140936959_140937049_140937154_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
ENSMUSG00000025505.17_0	chr7	+	1888	2	FSM	ENSMUSG00000025505.17	ENSMUST00000155657.2	905	2	-346	-637	-346	596	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTGATGAGC	232	False	NA	NA	False	NA	NA	NA	140907305	140913836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140908180_140912822
ENSMUSG00000025505.17_2	chr7	+	172	1	ISM	ENSMUSG00000025505.17	ENSMUST00000134221.2	749	2	92	2226	92	594	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAAAGTGATGA	6589	False	NA	NA	False	NA	NA	NA	140913662	140913834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140913700_140913800
ENSMUSG00000025507.14_10	chr7	-	3301	15	FSM	ENSMUSG00000025507.14	ENSMUST00000106005.9	2900	15	-7	-394	-6	-4	multi-exon	FALSE	canonical	3	24	junction_13	13.1049531063017	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGAATACCTTTGCAGA	NA	False	NA	-9	True	NA	NA	NA	141023275	141018033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141021735_141022063_141022478_141022880
ENSMUSG00000025507.14_19	chr7	-	3408	15	NIC	ENSMUSG00000025507.14	novel	3357	16	NA	NA	0	3	intron_retention	FALSE	canonical	3	24	junction_12	13.4416729400983	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACAGAATACCTTTGCAG	NA	False	NA	-10	True	NA	NA	NA	141023921	141018034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141021735_141022063_141022478_141022880_141023267_141023881
ENSMUSG00000025507.14_4	chr7	-	3332	16	FSM	ENSMUSG00000025507.14	ENSMUST00000026580.12	3357	16	17	8	0	-4	multi-exon	FALSE	canonical	3	24	junction_13	13.4154140201983	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGAATACCTTTGCAGA	NA	False	NA	-9	True	NA	NA	NA	141023921	141018033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141021735_141022063_141022478_141022880_141023267_141023881
ENSMUSG00000025507.14_5	chr7	-	3291	16	NIC	ENSMUSG00000025507.14	novel	3357	16	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_13	16.7668986067456	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATACCTTTGCAGAGATC	NA	False	NA	-5	True	NA	NA	NA	141023913	141018029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141021698_141022063_141022478_141022880_141023267_141023881
ENSMUSG00000025508.14_1	chr7	+	441	5	FSM	ENSMUSG00000025508.14	ENSMUST00000084434.11	964	5	281	242	-18	-6	multi-exon	FALSE	canonical	3	11307	junction_1	1806.73116428538	1938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTGAGTGGCCTTTAAAC	2398	False	NA	20	True	AATAAA	-13	NA	141027563	141031256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_141027621_141027820_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUSG00000025508.14_11	chr7	+	377	4	FSM	ENSMUSG00000025508.14	ENSMUST00000106003.2	449	4	65	7	65	-6	multi-exon	FALSE	canonical	3	11523	junction_3	1651.02843370091	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTGAGTGGCCTTTAAAC	2662	False	NA	20	True	AATAAA	-13	NA	141027827	141031256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUSG00000025509.16_0	chr7	+	1981	9	FSM	ENSMUSG00000025509.16	ENSMUST00000164016.8	2625	9	-13	657	-13	-6	multi-exon	FALSE	canonical	3	56	junction_3	8.3132048573339	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTGCCTTCCTCACTT	9932	False	NA	11	True	AATAAA	-12	NA	141035097	141039999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_141035387_141037185_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
ENSMUSG00000025509.16_3	chr7	+	1693	8	ISM	ENSMUSG00000025509.16	ENSMUST00000026583.15	2048	10	2066	6	254	-6	3prime_fragment	FALSE	canonical	3	56	junction_2	8.8109393972053	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTGCCTTCCTCACTT	NA	False	NA	11	True	AATAAA	-12	NA	141037184	141039999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
ENSMUSG00000025509.16_6	chr7	+	1378	6	ISM	ENSMUSG00000025509.16	ENSMUST00000164924.8	1957	10	2791	17	1002	-6	3prime_fragment	FALSE	canonical	3	59	junction_1	8.16333265278342	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTGCCTTCCTCACTT	NA	False	NA	11	True	AATAAA	-12	NA	141037932	141039999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
ENSMUSG00000025509.16_7	chr7	+	1145	5	ISM	ENSMUSG00000025509.16	ENSMUST00000164924.8	1957	10	3225	31	1436	-20	3prime_fragment	FALSE	canonical	3	63	junction_1	6.42261628933256	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCACAGCTCAGCTTC	NA	False	NA	-3	True	NA	NA	NA	141038366	141039985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
ENSMUSG00000025509.16_9	chr7	+	1633	1	NIC	ENSMUSG00000025509.16	novel	2625	9	NA	NA	1436	-6	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTGCCTTCCTCACTT	NA	False	NA	11	True	AATAAA	-12	NA	141038366	141039999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_141038400_141040000
ENSMUSG00000025510.15_0	chr7	+	1739	8	FSM	ENSMUSG00000025510.15	ENSMUST00000177840.9	1708	8	-20	-11	9	1	multi-exon	FALSE	canonical	3	214	junction_1	29.0537854500854	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCGAATCAGCTTGCTGAC	NA	False	NA	9	True	NA	NA	NA	141047314	141051387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_141047380_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
ENSMUSG00000025510.15_16	chr7	+	1642	7	FSM	ENSMUSG00000025510.15	ENSMUST00000058746.7	1619	7	-18	-5	-18	4	multi-exon	FALSE	canonical	3	37	junction_1	95.130465969402	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATCAGCTTGCTGACAGG	692	False	NA	12	True	NA	NA	NA	141048716	141051390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_141048810_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
ENSMUSG00000025510.15_2	chr7	+	1850	8	FSM	ENSMUSG00000025510.15	ENSMUST00000106000.10	1865	8	16	-1	-13	1	multi-exon	FALSE	canonical	3	98	junction_1	68.1968938187848	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCGAATCAGCTTGCTGAC	NA	False	NA	9	True	NA	NA	NA	141047321	141051387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_141047498_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
ENSMUSG00000025510.15_23	chr7	+	589	1	ISM	ENSMUSG00000025510.15	ENSMUST00000106000.10	1865	8	3489	3	499	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACTCGAATCAGCTTGC	2770	False	NA	5	True	NA	NA	NA	141050794	141051383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_141050800_141051400
ENSMUSG00000025511.16_0	chr7	+	1294	8	FSM	ENSMUSG00000025511.16	ENSMUST00000026585.14	1466	8	166	6	-104	0	multi-exon	FALSE	canonical	3	56	junction_1	68.6787850082111	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACTGAGGAAGTTCTT	3657	False	NA	39	True	NA	NA	NA	141055318	141073334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_141055411_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ENSMUSG00000025511.16_5	chr7	+	1642	7	FSM	ENSMUSG00000025511.16	ENSMUST00000239217.2	1157	7	-20	-465	-20	-3	multi-exon	FALSE	canonical	3	206	junction_2	25.1241362482817	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTCAACTGAGGAAGTT	634	False	NA	36	True	NA	NA	NA	141061956	141073331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ENSMUSG00000025512.16_0	chr7	-	1571	13	FSM	ENSMUSG00000025512.16	ENSMUST00000153191.8	4182	13	8	2603	-4	309	multi-exon	FALSE	canonical	3	145	junction_12	22.800310670398	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTCAGCATCACCCTTAA	NA	False	NA	NA	False	NA	NA	NA	141119721	141075651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314_141095417_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141110213_141112731_141112887_141119685
ENSMUSG00000025512.16_11	chr7	-	2401	12	NIC	ENSMUSG00000025512.16	novel	4182	13	NA	NA	-4	78	intron_retention	FALSE	canonical	3	145	junction_11	23.7190860136371	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGAGACAGCTGCTATG	NA	False	NA	-6	True	AATATA	-17	NA	141119721	141075882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314_141095417_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141109615_141110062_141110213_141112731_141112887_141119685
ENSMUSG00000025512.16_3	chr7	-	1917	12	ISM	ENSMUSG00000025512.16	ENSMUST00000153191.8	4182	13	6841	2223	-41	-10	3prime_fragment	FALSE	canonical	3	185	junction_5	13.5207217764205	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTGAAGAATGGCTGACCT	4926	False	NA	-32	True	NA	NA	NA	141112888	141075271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314_141095417_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141110213_141112731
ENSMUSG00000025519.6_0	chr8	+	6340	2	FSM	ENSMUSG00000025519.6	ENSMUST00000183187.2	5485	2	0	-855	0	855	multi-exon	FALSE	canonical	3	13	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGACAGTTGAATAAAATAGA	NA	False	NA	NA	False	AATAAA	-10	NA	66964410	66971842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_66966353_66967444
ENSMUSG00000025519.6_1	chr8	+	2296	1	FSM	ENSMUSG00000025519.6	ENSMUST00000002025.5	2021	1	4	-279	1	279	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGATCAACTTTAGCAA	NA	False	NA	NA	False	TATAAA	-16	NA	66964411	66966707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_66964400_66966700
ENSMUSG00000025519.6_2	chr8	+	3142	1	Genic_Genomic	ENSMUSG00000025519.6	novel	NA	NA	NA	NA	4295	860	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTGAATAAAATAGAGGTGA	NA	False	NA	NA	False	AATAAA	-15	NA	66968705	66971847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_66968700_66971800
ENSMUSG00000025521.16_0	chr8	+	1083	6	FSM	ENSMUSG00000025521.16	ENSMUST00000026595.13	1122	6	38	1	4	1	multi-exon	FALSE	canonical	3	529	junction_4	36.201657420621	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTTTTGTATGTTGTG	NA	False	NA	24	True	TATAAA	-16	NA	65399874	65421684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65416849_65416985_65418190_65418294_65421362
ENSMUSG00000025525.13_0	chrX	+	976	9	FSM	ENSMUSG00000025525.13	ENSMUST00000026599.10	1359	9	57	326	25	-1	multi-exon	FALSE	canonical	3	334	junction_1	40.3205902734571	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAAGTGGTAAAATCATA	NA	False	NA	7	True	AATAAA	-15	NA	111221087	111282126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158_111274268_111281890
ENSMUSG00000025529.15_0	chrX	+	4150	9	NNC	ENSMUSG00000025529.15	novel	4330	9	NA	NA	163	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	3.70809924354783	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTCAAAGTTTTATAATTT	NA	False	NA	NA	False	AATAAA	-14	NA	111510385	111544759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_111510603_111512361_111512480_111513964_111514070_111524589_111525133_111533648_111533805_111534435_111534574_111537800_111537846_111541522_111541667_111542075
ENSMUSG00000025529.15_1	chrX	+	4217	9	FSM	ENSMUSG00000025529.15	ENSMUST00000113409.8	4330	9	118	-5	118	-3	multi-exon	TRUE	canonical	2	5	junction_6	4.35889894354067	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTTTATAATTTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	111510340	111544764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_111510603_111513964_111514070_111524589_111525133_111533648_111533805_111534435_111534574_111536866_111537002_111537800_111537846_111541522_111541667_111542075
ENSMUSG00000025529.15_2	chrX	+	4224	10	NNC	ENSMUSG00000025529.15	novel	4330	9	NA	NA	229	-3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	4.24264068711928	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTTTATAATTTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	111510451	111544764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_111510603_111512361_111512480_111513964_111514070_111524589_111525133_111533648_111533805_111534435_111534574_111536866_111537002_111537800_111537846_111541522_111541667_111542075
ENSMUSG00000025529.15_3	chrX	+	4045	8	NIC	ENSMUSG00000025529.15	novel	4330	9	NA	NA	150	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	4.0607629724434	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTCAAAGTTTTATAATTT	NA	False	NA	NA	False	AATAAA	-14	NA	111510372	111544759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_111510603_111513964_111514070_111524589_111525133_111533648_111533805_111534435_111534574_111537800_111537846_111541522_111541667_111542075
ENSMUSG00000025529.15_6	chrX	+	2266	1	ISM	ENSMUSG00000025529.15	ENSMUST00000071814.13	3817	7	28528	3	17501	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTTTATAATTTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	111542498	111544764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_111542500_111544800
ENSMUSG00000025529.15_7	chrX	+	3971	6	ISM	ENSMUSG00000025529.15	ENSMUST00000071814.13	3817	7	10356	10	-671	-2	3prime_fragment	FALSE	canonical	2	6	junction_3	3.8262252939418	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTTCAAAGTTTTATAAT	NA	False	NA	NA	False	AATAAA	-12	NA	111524326	111544757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_111525133_111533648_111533805_111534435_111534574_111537800_111537846_111541522_111541667_111542075
ENSMUSG00000025531.15_0	chrX	-	4862	15	FSM	ENSMUSG00000025531.15	ENSMUST00000026607.15	4868	15	6	0	-2	0	multi-exon	TRUE	canonical	3	145	junction_7	16.3001189428489	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCACTGTAATGGCTTATT	NA	False	NA	-9	True	AATAAA	-16	NA	112095208	111950289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_111953333_111957032_111957194_111962758_111962858_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112022245_112022363_112025712_112026128_112049032_112049158_112050410_112050484_112069200_112069268_112095137
ENSMUSG00000025531.15_1	chrX	-	2128	1	ISM	ENSMUSG00000025531.15	ENSMUST00000026607.15	4868	15	142797	0	4859	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCACTGTAATGGCTTATT	NA	False	NA	-9	True	AATAAA	-16	NA	111952417	111950289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_111950300_111952400
ENSMUSG00000025532.14_0	chr5	+	1439	6	FSM	ENSMUSG00000025532.14	ENSMUST00000026608.11	1492	6	25	28	4	-28	multi-exon	FALSE	canonical	3	269	junction_4	51.2382669496149	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAATAAACCAAC	NA	False	NA	-23	True	NA	NA	NA	130058155	130089602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
ENSMUSG00000025532.14_2	chr5	+	1362	5	FSM	ENSMUSG00000025532.14	ENSMUST00000202163.4	931	5	12	-443	3	-11	multi-exon	FALSE	canonical	3	60	junction_3	138.212472302611	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAAACAGCATGTGCC	NA	False	NA	-6	True	NA	NA	NA	130058154	130089619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130077766_130077825_130088545
ENSMUSG00000025532.14_4	chr5	+	1494	6	FSM	ENSMUSG00000025532.14	ENSMUST00000156729.2	669	6	4	-829	4	-28	multi-exon	FALSE	canonical	3	25	junction_1	131.765549367048	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAATAAACCAAC	NA	False	NA	-23	True	NA	NA	NA	130058187	130089602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_130058336_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
ENSMUSG00000025533.16_1	chr5	-	1709	16	FSM	ENSMUSG00000025533.16	ENSMUST00000160129.8	2413	16	700	4	-2	-4	multi-exon	FALSE	canonical	1	102	junction_3	47.1472398155207	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGAGACAAGCATATGCTT	NA	False	NA	-14	True	AATAAA	-17	NA	130053160	130040348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882
ENSMUSG00000025533.16_11	chr5	-	1583	17	NIC	ENSMUSG00000025533.16	novel	1824	17	NA	NA	-6	-6	combination_of_known_junctions	FALSE	canonical	1	7	junction_16	77.2141654345237	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCGAGACAAGCATATGC	NA	False	NA	-16	True	AATAAA	-15	NA	130053147	130040350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053048
ENSMUSG00000025533.16_2	chr5	-	1534	17	FSM	ENSMUSG00000025533.16	ENSMUST00000161094.8	1824	17	38	252	2	-6	multi-exon	FALSE	canonical	1	102	junction_3	46.3975686324187	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCGAGACAAGCATATGC	NA	False	NA	-16	True	AATAAA	-15	NA	130053184	130040350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053134
ENSMUSG00000025534.18_0	chr5	-	2483	12	FSM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	188	16	4	-4	multi-exon	FALSE	canonical	3	83	junction_6	16.6092675514317	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATCTAAAAAAAAAAACTGT	NA	False	NA	NA	False	NA	NA	NA	130031702	130017867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
ENSMUSG00000025534.18_1	chr5	-	2289	11	FSM	ENSMUSG00000025534.18	ENSMUST00000201801.4	2272	11	-16	-1	-16	1	multi-exon	TRUE	canonical	3	14	junction_9	32.1249124512426	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAACTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	130031685	130017862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029597_130029784_130031447
ENSMUSG00000025534.18_15	chr5	-	1091	4	FSM	ENSMUSG00000025534.18	ENSMUST00000111308.8	2038	4	0	947	0	-7	multi-exon	FALSE	canonical	3	115	junction_2	11.5854314646552	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGCAGTTGTTCGCTATT	NA	False	NA	NA	False	AATAAA	-8	NA	130031706	130028446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_130028911_130029201_130029384_130029597_130029784_130031447
ENSMUSG00000025537.13_0	chr5	-	2349	8	ISM	ENSMUSG00000025537.13	ENSMUST00000026617.13	2374	10	4979	12	1	-12	3prime_fragment	FALSE	canonical	3	15	junction_6	2.74791200881019	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGGATTTAT	NA	False	NA	NA	False	NA	NA	NA	129902945	129892273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_129893531_129893815_129893942_129894757_129894912_129895036_129895128_129895702_129895867_129898301_129898368_129902056_129902112_129902509
ENSMUSG00000025537.13_1	chr5	-	1595	9	NNC	ENSMUSG00000025537.13	novel	2374	10	NA	NA	-7	-662	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	4.49305018890286	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGCAGCTGAGACCGTGAT	NA	False	NA	NA	False	NA	NA	NA	129902953	129892923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_129893531_129893815_129893942_129894757_129894912_129895036_129895128_129895702_129895867_129898301_129898368_129902056_129902112_129902509_129902689_129902800
ENSMUSG00000025537.13_14	chr5	-	2246	7	NIC	ENSMUSG00000025537.13	novel	2374	10	NA	NA	-4	-695	intron_retention	FALSE	canonical	3	15	junction_5	2.96741563579414	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAGATAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	129902950	129892956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_129893531_129893815_129893942_129894757_129894912_129895036_129895867_129898301_129898368_129902056_129902112_129902509
ENSMUSG00000025537.13_4	chr5	-	175	1	ISM	ENSMUSG00000025537.13	ENSMUST00000026617.13	2374	10	15476	12	6480	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGGATTTAT	NA	False	NA	NA	False	NA	NA	NA	129892448	129892273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_129892300_129892400
ENSMUSG00000025537.13_8	chr5	-	726	1	FSM	ENSMUSG00000025537.13	ENSMUST00000200832.2	2119	1	1392	1	-498	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129899426	129898700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_129898700_129899400
ENSMUSG00000025537.13_9	chr5	-	185	1	FSM	ENSMUSG00000025537.13	ENSMUST00000200832.2	2119	1	645	1289	645	-1289	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGTTTAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	129900173	129899988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_129900000_129900200
ENSMUSG00000025538.16_0	chr5	+	1625	9	FSM	ENSMUSG00000025538.16	ENSMUST00000171300.8	2264	9	20	619	-5	-1	multi-exon	FALSE	canonical	3	460	junction_6	14.1371629049113	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGATTTATTTATTTATTA	NA	False	NA	15	True	AATAAA	-15	NA	129875846	129892272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
ENSMUSG00000025538.16_4	chr5	+	1465	8	NIC	ENSMUSG00000025538.16	novel	1656	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	161.455749924471	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	16	True	AATAAA	-16	NA	129875850	129892273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_129875928_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
ENSMUSG00000025544.14_2	chr14	+	2772	17	FSM	ENSMUSG00000025544.14	ENSMUST00000026624.11	3107	17	62	273	-38	-273	multi-exon	TRUE	canonical	3	817	junction_12	125.603480743967	1529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCATTGTATCACTCCCT	NA	False	NA	29	True	AATAAA	-14	NA	122344511	122396743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
ENSMUSG00000025544.14_50	chr14	+	184	2	ISM	ENSMUSG00000025544.14	ENSMUST00000171318.2	1494	13	48165	-49	48165	49	3prime_fragment	FALSE	canonical	3	1385	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGACCTGTTTTGTGAC	8773	False	NA	10	True	AATAAA	-15	NA	122392844	122396177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_122392912_122396060
ENSMUSG00000025545.11_2	chr14	+	1216	8	FSM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	8	7	8	0	multi-exon	FALSE	canonical	3	643	junction_7	45.2372430997437	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTAAGCTTATGGTTTTG	NA	False	NA	5	True	AATAAA	-15	NA	122419123	122639639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
ENSMUSG00000025545.11_22	chr14	+	1235	8	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	19458	-3	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	209.063900005989	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTTATGGTTTTGCTAT	NA	False	NA	9	True	AATAAA	-19	NA	122514910	122639643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_122514996_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
ENSMUSG00000025545.11_4	chr14	+	1661	3	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	14	29584	14	-29577	5prime_fragment	FALSE	canonical	3	648	junction_1	10.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122419129	122610062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_122419194_122548655_122548843_122608652
ENSMUSG00000025555.15_1	chr14	+	4684	27	NIC	ENSMUSG00000025555.15	novel	797	8	NA	NA	-33	-11	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	30.9907649920569	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCAAAACCACCACCTGTG	NA	False	NA	24	True	AATAAA	-37	NA	121272578	121521145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_121272751_121339400_121339595_121444665_121444771_121456788_121456832_121460051_121460131_121468040_121468139_121471141_121471257_121472477_121472626_121474547_121474644_121476039_121476204_121477385_121477455_121479798_121479875_121480764_121481021_121492819_121493008_121494128_121494219_121495244_121495379_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
ENSMUSG00000025555.15_2	chr14	+	4868	27	FSM	ENSMUSG00000025555.15	ENSMUST00000026635.8	4885	27	10	7	10	-7	multi-exon	FALSE	canonical	3	58	junction_13	25.8768133172464	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCACCACCTGTGTCTT	NA	False	NA	28	True	AATAAA	-41	NA	121272985	121521149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_121273338_121339400_121339595_121444665_121444771_121456788_121456832_121460051_121460131_121468040_121468139_121471141_121471257_121472477_121472626_121474547_121474644_121476039_121476204_121477385_121477455_121479798_121479875_121480764_121481021_121492819_121493008_121494128_121494219_121495244_121495379_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
ENSMUSG00000025555.15_3	chr14	+	4831	27	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	17	-7	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_13	30.1476887355345	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCACCACCTGTGTCTT	NA	False	NA	28	True	AATAAA	-41	NA	121272992	121521149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_121273338_121339400_121339595_121444665_121444771_121456788_121456832_121460051_121460131_121468040_121468139_121471141_121471257_121472477_121472626_121474547_121474644_121476039_121476204_121477385_121477455_121479798_121479875_121480764_121481021_121492849_121493008_121494128_121494219_121495244_121495379_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
ENSMUSG00000025555.15_31	chr14	+	2048	14	ISM	ENSMUSG00000025555.15	ENSMUST00000026635.8	4885	27	219942	934	598	-934	3prime_fragment	FALSE	canonical	3	68	junction_3	24.085891669498	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTCCAATCTTTCTA	NA	False	NA	25	True	AGTAAA	-22	NA	121492917	121520222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_121493008_121494128_121494219_121495244_121495379_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
ENSMUSG00000025555.15_38	chr14	+	2749	12	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	11497	-22	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	36.2427536216917	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAAGTCTGAGGCAAAAC	NA	False	NA	13	True	AATAAA	-26	NA	121503816	121521134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_121503920_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
ENSMUSG00000025555.15_46	chr14	+	1226	1	ISM	ENSMUSG00000025555.15	ENSMUST00000026635.8	4885	27	246948	7	27604	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCACCACCTGTGTCTT	NA	False	NA	28	True	AATAAA	-41	NA	121519923	121521149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_121519900_121521100
ENSMUSG00000025557.11_0	chr14	-	3176	23	FSM	ENSMUSG00000025557.11	ENSMUST00000088386.8	3121	23	-55	0	-55	0	multi-exon	FALSE	canonical	3	25	junction_3	5.65119017669934	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATATGTGTTTGTGTGT	3083	False	NA	-6	True	AATAAA	-12	NA	121742719	121697032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_121698186_121699878_121699987_121702314_121702459_121703293_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048_121724140_121724405_121724506_121727201_121727322_121728404_121728547_121728640_121728723_121729085_121729103_121742630
ENSMUSG00000025557.11_1	chr14	-	1014	1	ISM	ENSMUSG00000025557.11	ENSMUST00000088386.8	3121	23	44618	0	31835	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATATGTGTTTGTGTGT	414	False	NA	-6	True	AATAAA	-12	NA	121698046	121697032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_121697000_121698000
ENSMUSG00000025557.11_3	chr14	-	2569	17	ISM	ENSMUSG00000025557.11	ENSMUST00000088386.8	3121	23	18582	0	5799	0	3prime_fragment	FALSE	canonical	3	25	junction_3	5.20479046168047	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATATGTGTTTGTGTGT	NA	False	NA	-6	True	AATAAA	-12	NA	121724082	121697032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_121698186_121699878_121699987_121702314_121702459_121703293_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048
ENSMUSG00000025558.20_14	chr14	-	7885	54	NIC	ENSMUSG00000025558.20	novel	7803	54	NA	NA	-39	-81	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	12.5739676944609	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCACTGCCCTGCTGTAA	NA	False	NA	-1	True	AATAAA	-18	NA	122035288	121779638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605_121787797_121792527_121792739_121796398_121796546_121798001_121798116_121799466_121799590_121813324_121813432_121814758_121814837_121815566_121815625_121817896_121818113_121818743_121818858_121820769_121820953_121821073_121821212_121823638_121823755_121829223_121829361_121831747_121831796_121832953_121833021_121835053_121835166_121837099_121837234_121842583_121842702_121844222_121844337_121844512_121844692_121846567_121846680_121847173_121847258_121847434_121847582_121856874_121856947_121858706_121858833_121859693_121859764_121860257_121860374_121862567_121862658_121863314_121863402_121864228_121864351_121864706_121864831_121865203_121865297_121865920_121865987_121866136_121866325_121866413_121866494_121871915_121872039_121872568_121872652_121876878_121877002_121877373_121877572_121878889_121879031_121880532_121880608_121889161_121889230_121890382_121890558_121894913_121895049_121896121_121896218_121897844_121897915_121899922_121900006_121905821_121905912_121918758_121918876_122034901
ENSMUSG00000025558.20_15	chr14	-	7688	53	NIC	ENSMUSG00000025558.20	novel	6996	56	NA	NA	15	-80	combination_of_known_junctions	FALSE	canonical	3	15	junction_16	11.1448737121231	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACTGCCCTGCTGTAAT	NA	False	NA	0	True	AATAAA	-19	NA	122035234	121779637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605_121787797_121792527_121792739_121796398_121796546_121798001_121798116_121799466_121799590_121813324_121813432_121815566_121815625_121817896_121818113_121818743_121818858_121820769_121820953_121821073_121821212_121823638_121823755_121829223_121829292_121831747_121831796_121832953_121833021_121835053_121835169_121837099_121837234_121842583_121842702_121844222_121844337_121844512_121844692_121846567_121846680_121847173_121847258_121847434_121847582_121856874_121856947_121858706_121858833_121859693_121859764_121860257_121860374_121862567_121862658_121863314_121863402_121864228_121864351_121864706_121864831_121865203_121865297_121865920_121865987_121866136_121866325_121866413_121866494_121871915_121872039_121872568_121872652_121876878_121877002_121877373_121877572_121878889_121879031_121880532_121880608_121889161_121889230_121890382_121890558_121894913_121895049_121896121_121896218_121897844_121897915_121899922_121900006_121905821_121905912_121918758_121918876_122034901
ENSMUSG00000025558.20_16	chr14	-	7871	54	NIC	ENSMUSG00000025558.20	novel	7803	54	NA	NA	-21	-80	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	12.5346085513012	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACTGCCCTGCTGTAAT	NA	False	NA	0	True	AATAAA	-19	NA	122035270	121779637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605_121787797_121792527_121792739_121796398_121796546_121798001_121798116_121799466_121799590_121813324_121813432_121814758_121814837_121815566_121815625_121817896_121818113_121818743_121818858_121820769_121820953_121821073_121821212_121823638_121823755_121829223_121829361_121831747_121831796_121832953_121833021_121835053_121835169_121837099_121837234_121842583_121842702_121844222_121844337_121844512_121844692_121846567_121846680_121847173_121847258_121847434_121847582_121856874_121856947_121858706_121858833_121859693_121859764_121860257_121860374_121862567_121862658_121863314_121863402_121864228_121864351_121864706_121864831_121865203_121865297_121865920_121865987_121866136_121866325_121866413_121866494_121871915_121872039_121872568_121872652_121876878_121877002_121877373_121877572_121878889_121879031_121880532_121880608_121889161_121889230_121890382_121890558_121894913_121895049_121896121_121896218_121897844_121897915_121899922_121900006_121905821_121905912_121918758_121918876_122034901
ENSMUSG00000025558.20_5	chr14	-	7791	53	NIC	ENSMUSG00000025558.20	novel	7803	54	NA	NA	-22	-80	combination_of_known_junctions	FALSE	canonical	3	31	junction_19	9.91970351126884	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACTGCCCTGCTGTAAT	NA	False	NA	0	True	AATAAA	-19	NA	122035271	121779637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605_121787797_121792527_121792739_121796398_121796546_121798001_121798116_121799466_121799590_121813324_121813432_121815566_121815625_121817896_121818113_121818743_121818858_121820769_121820953_121821073_121821212_121823638_121823755_121829223_121829361_121831747_121831796_121832953_121833021_121835053_121835166_121837099_121837234_121842583_121842702_121844222_121844337_121844512_121844692_121846567_121846680_121847173_121847258_121847434_121847582_121856874_121856947_121858706_121858833_121859693_121859764_121860257_121860374_121862567_121862658_121863314_121863402_121864228_121864351_121864706_121864831_121865203_121865297_121865920_121865987_121866136_121866325_121866413_121866494_121871915_121872039_121872568_121872652_121876878_121877002_121877373_121877572_121878889_121879031_121880532_121880608_121889161_121889230_121890382_121890558_121894913_121895049_121896121_121896218_121897844_121897915_121899922_121900006_121905821_121905912_121918758_121918876_122034901
ENSMUSG00000025558.20_6	chr14	-	7784	53	NIC	ENSMUSG00000025558.20	novel	8107	55	NA	NA	-22	-18	combination_of_known_junctions	FALSE	canonical	3	15	junction_16	11.191448552804	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTCTGGTAATAAACACT	NA	False	NA	-50	True	ATTAAA	-39	NA	122035271	121779575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605_121787797_121792527_121792739_121796398_121796546_121798001_121798116_121799466_121799590_121813324_121813432_121815566_121815625_121817896_121818113_121818743_121818858_121820769_121820953_121821073_121821212_121823638_121823755_121829223_121829292_121831747_121831796_121832953_121833021_121835053_121835166_121837099_121837234_121842583_121842702_121844222_121844337_121844512_121844692_121846567_121846680_121847173_121847258_121847434_121847582_121856874_121856947_121858706_121858833_121859693_121859764_121860257_121860374_121862567_121862658_121863314_121863402_121864228_121864351_121864706_121864831_121865203_121865297_121865920_121865987_121866136_121866325_121866413_121866494_121871915_121872039_121872568_121872652_121876878_121877002_121877373_121877572_121878889_121879031_121880532_121880608_121889161_121889230_121890382_121890558_121894913_121895049_121896121_121896218_121897844_121897915_121899922_121900006_121905821_121905912_121918758_121918876_122034901
ENSMUSG00000025558.20_7	chr14	-	7924	54	NIC	ENSMUSG00000025558.20	novel	7803	54	NA	NA	-42	-11	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	13.5083271392276	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCTAAAAAAGGACAGGGT	NA	False	NA	-11	True	AATAAA	-24	NA	122035291	121779536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605_121787797_121792527_121792739_121796398_121796546_121798001_121798116_121799466_121799590_121813324_121813432_121814758_121814837_121815566_121815625_121817896_121818113_121818743_121818858_121820769_121820953_121821073_121821212_121823638_121823755_121829223_121829292_121831747_121831796_121832953_121833021_121835053_121835169_121837099_121837234_121842583_121842702_121844222_121844337_121844512_121844692_121846567_121846680_121847173_121847258_121847434_121847582_121856874_121856947_121858706_121858833_121859693_121859764_121860257_121860374_121862567_121862658_121863314_121863402_121864228_121864351_121864706_121864831_121865203_121865297_121865920_121865987_121866136_121866325_121866413_121866494_121871915_121872039_121872568_121872652_121876878_121877002_121877373_121877572_121878889_121879031_121880532_121880608_121889161_121889230_121890382_121890558_121894913_121895049_121896121_121896218_121897844_121897915_121899922_121900006_121905821_121905912_121918758_121918876_122034901
ENSMUSG00000025558.20_9	chr14	-	7703	53	NIC	ENSMUSG00000025558.20	novel	7368	53	NA	NA	69	-80	combination_of_known_junctions	FALSE	canonical	3	32	junction_19	9.86634048450655	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACTGCCCTGCTGTAAT	NA	False	NA	0	True	AATAAA	-19	NA	122035180	121779637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605_121787797_121792527_121792739_121796398_121796546_121798001_121798116_121799466_121799590_121813324_121813432_121815566_121815625_121817896_121818113_121818743_121818858_121820769_121820953_121821073_121821212_121823638_121823755_121829223_121829361_121831747_121831796_121832953_121833021_121835053_121835169_121837099_121837234_121842583_121842702_121844222_121844337_121844512_121844692_121846567_121846680_121847173_121847258_121847434_121847582_121856874_121856947_121858706_121858833_121859693_121859764_121860257_121860374_121862567_121862658_121863314_121863402_121864228_121864351_121864706_121864831_121865203_121865297_121865920_121865987_121866136_121866325_121866413_121866494_121871915_121872039_121872568_121872652_121876878_121877002_121877373_121877572_121878889_121879031_121880532_121880608_121889161_121889230_121890382_121890558_121894913_121895049_121896121_121896218_121897844_121897915_121899922_121900006_121905821_121905912_121918758_121918876_122034901
ENSMUSG00000025571.14_26	chr11	+	3035	1	NIC	ENSMUSG00000025571.14	novel	8724	22	NA	NA	265	-24984	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATACAAGTTGTATTTTT	NA	False	NA	NA	False	TATAAA	-12	NA	117612108	117615143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117612100_117615100
ENSMUSG00000025571.14_27	chr11	+	4763	17	NIC	ENSMUSG00000025571.14	novel	6612	18	NA	NA	1305	-394	combination_of_known_splicesites	FALSE	canonical	3	46	junction_6	21.6274384463348	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTCATGTGTAAATGTT	NA	False	NA	27	True	AGTAAA	-26	NA	117613148	117652696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117614377_117622993_117623207_117624435_117624603_117626797_117626879_117629116_117629175_117630692_117630836_117633752_117633891_117638002_117638123_117640069_117640154_117640402_117640644_117643802_117643971_117646156_117646349_117646788_117646933_117648762_117648958_117649729_117649801_117650449_117650590_117651316
ENSMUSG00000025571.14_28	chr11	+	5005	18	FSM	ENSMUSG00000025571.14	ENSMUST00000138299.2	6612	18	1587	20	1587	-20	multi-exon	FALSE	canonical	3	68	junction_6	17.8043966421889	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATTTTAAAAATGTT	NA	False	NA	NA	False	AATAAA	-6	NA	117613430	117653070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117614377_117622993_117623207_117624435_117624603_117626797_117626879_117629116_117629175_117630692_117630836_117632494_117632645_117633752_117633891_117638002_117638123_117640069_117640154_117640402_117640644_117643802_117643971_117646156_117646349_117646788_117646933_117648762_117648958_117649729_117649801_117650449_117650590_117651316
ENSMUSG00000025571.14_3	chr11	+	4191	5	ISM	ENSMUSG00000025571.14	ENSMUST00000106344.8	8847	22	0	39267	0	-25129	5prime_fragment	FALSE	canonical	3	93	junction_3	5.40832691319598	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGGCTTTTCTTTAATT	NA	False	NA	NA	False	GATAAA	-15	NA	117545638	117614998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_117546158_117591550_117591651_117593204_117593227_117604951_117605279_117611775
ENSMUSG00000025571.14_4	chr11	+	7465	21	NIC	ENSMUSG00000025571.14	novel	8847	22	NA	NA	0	-33	combination_of_known_splicesites	FALSE	canonical	3	46	junction_10	19.6913051878234	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAATTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117545638	117653057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117546158_117591550_117591651_117593204_117593227_117604951_117605279_117611775_117614377_117622993_117623207_117624435_117624603_117626797_117626879_117629116_117629175_117630692_117630836_117633752_117633891_117638002_117638123_117640069_117640154_117640402_117640644_117643802_117643971_117646156_117646349_117646788_117646933_117648762_117648958_117649729_117649801_117650449_117650590_117651316
ENSMUSG00000025571.14_48	chr11	+	1378	1	ISM	ENSMUSG00000025571.14	ENSMUST00000026658.13	8724	22	106898	873	11956	300	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-30	NA	117652012	117653390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_117652000_117653400
ENSMUSG00000025571.14_8	chr11	+	7422	22	NIC	ENSMUSG00000025571.14	novel	8847	22	NA	NA	2	-224	combination_of_known_junctions	FALSE	canonical	3	68	junction_10	16.4620087603641	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAGAAAAACAAACTCTT	NA	False	NA	NA	False	TATAAA	-4	NA	117545640	117652866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117546158_117591550_117591651_117593204_117593227_117604951_117605279_117611775_117614377_117622993_117623207_117624435_117624603_117626797_117626879_117629116_117629175_117630692_117630836_117632494_117632645_117633752_117633891_117638002_117638123_117640069_117640154_117640402_117640644_117643802_117643971_117646156_117646349_117646788_117646933_117648762_117648958_117649729_117649801_117650449_117650590_117651316
ENSMUSG00000025572.19_0	chr11	-	2898	20	FSM	ENSMUSG00000025572.19	ENSMUST00000026659.10	2865	20	-36	3	-17	-3	multi-exon	TRUE	canonical	3	224	junction_9	41.6618095045227	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGTTTGTGCTTCAGG	NA	False	NA	-7	True	ATTAAA	-12	NA	117671501	117656816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
ENSMUSG00000025572.19_2	chr11	-	2886	20	NNC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	-17	-3	at_least_one_novel_splicesite	TRUE	canonical	3	72	junction_9	62.8793418727409	102	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGTTTGTGCTTCAGG	NA	False	NA	-7	True	ATTAAA	-12	NA	117671501	117656816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664200_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
ENSMUSG00000025574.14_1	chr11	-	1194	7	FSM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	245	1	0	-1	multi-exon	FALSE	canonical	3	796	junction_5	107.729084074615	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACGTGTTTCTCCTTAGC	NA	False	NA	-18	True	ATTAAA	-15	NA	117716673	117706352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
ENSMUSG00000025574.14_2	chr11	-	1162	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	149	junction_5	366.911215418662	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACGTGTTTCTCCTTAGC	NA	False	NA	-18	True	ATTAAA	-15	NA	117716673	117706352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716539
ENSMUSG00000025574.14_3	chr11	-	1120	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	0	15	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	399.354178643469	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGGGTTTCCCTAACT	NA	False	NA	-2	True	ATTAAA	-31	NA	117716673	117706336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_117706966_117707272_117707393_117712922_117713017_117715496_117715608_117716426_117716459_117716539
ENSMUSG00000025574.14_4	chr11	-	2086	5	ISM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	255	-1	0	1	intron_retention	FALSE	canonical	3	985	junction_3	61.9732805328232	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTGTTTCTCCTTAGCCT	NA	False	NA	-16	True	ATTAAA	-17	NA	117716663	117706350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496
ENSMUSG00000025575.15_0	chr11	-	2820	5	FSM	ENSMUSG00000025575.15	ENSMUST00000106288.8	2873	5	47	6	18	-5	multi-exon	FALSE	canonical	3	81	junction_4	37.662979170533	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTTCTCTTGTCTAT	9039	False	NA	-7	True	AATAAA	-11	NA	118309831	118297120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308481_118309755
ENSMUSG00000025575.15_1	chr11	-	2796	5	FSM	ENSMUSG00000025575.15	ENSMUST00000106287.8	1476	5	29	-1349	0	-5	multi-exon	FALSE	canonical	3	11	junction_4	67.913547985656	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTTCTCTTGTCTAT	9021	False	NA	-7	True	AATAAA	-11	NA	118309849	118297120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308481_118309797
ENSMUSG00000025575.15_10	chr11	-	1557	1	ISM	ENSMUSG00000025575.15	ENSMUST00000106288.8	2873	5	11201	6	7943	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTTCTCTTGTCTAT	5200	False	NA	-7	True	AATAAA	-11	NA	118298677	118297120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_118297100_118298700
ENSMUSG00000025575.15_2	chr11	-	2990	5	FSM	ENSMUSG00000025575.15	ENSMUST00000092378.10	2995	5	0	5	0	-5	multi-exon	TRUE	canonical	3	9	junction_4	68.7786304021823	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTTCTCTTGTCTAT	9021	False	NA	-7	True	AATAAA	-11	NA	118309849	118297120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308633_118309755
ENSMUSG00000025575.15_3	chr11	-	2231	3	ISM	ENSMUSG00000025575.15	ENSMUST00000164927.2	1379	4	4715	-1349	4715	-5	3prime_fragment	FALSE	canonical	3	163	junction_2	4.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTTCTCTTGTCTAT	8734	False	NA	-7	True	AATAAA	-11	NA	118301905	118297120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_118298921_118299506_118299711_118301678
ENSMUSG00000025575.15_4	chr11	-	4091	4	FSM	ENSMUSG00000025575.15	ENSMUST00000017620.10	4182	4	85	6	22	-5	multi-exon	FALSE	canonical	3	163	junction_2	3.68178700572909	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTTCTCTTGTCTAT	9043	False	NA	-7	True	AATAAA	-11	NA	118309827	118297120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399
ENSMUSG00000025575.15_5	chr11	-	1990	2	ISM	ENSMUSG00000025575.15	ENSMUST00000164927.2	1379	4	6922	-1347	6922	-7	3prime_fragment	FALSE	canonical	3	172	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGTGGTTCTCTTGTCT	4179	False	NA	-9	True	AATAAA	-9	NA	118299698	118297122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_118298921_118299506
ENSMUSG00000025577.8_0	chr11	+	3701	5	FSM	ENSMUSG00000025577.8	ENSMUST00000026662.8	3807	5	105	1	105	-1	multi-exon	TRUE	canonical	3	204	junction_1	10.9630059746403	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTGCTGTTCTCTTCCC	NA	False	NA	12	True	AATAAA	-14	NA	118913892	118922095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_118914007_118914083_118914128_118915000_118915067_118917275_118917382_118918724
ENSMUSG00000025577.8_10	chr11	+	2359	1	ISM	ENSMUSG00000025577.8	ENSMUST00000026662.8	3807	5	5949	1	5186	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTGCTGTTCTCTTCCC	NA	False	NA	12	True	AATAAA	-14	NA	118919736	118922095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_118919700_118922100
ENSMUSG00000025577.8_3	chr11	+	3764	4	NIC	ENSMUSG00000025577.8	novel	3807	5	NA	NA	119	-1	intron_retention	FALSE	canonical	3	213	junction_1	8.73053390247253	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTGCTGTTCTCTTCCC	NA	False	NA	12	True	AATAAA	-14	NA	118913906	118922095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_118914128_118915000_118915067_118917275_118917382_118918724
ENSMUSG00000025578.10_0	chr11	-	1383	5	FSM	ENSMUSG00000025578.10	ENSMUST00000026663.8	3580	5	61	2136	3	612	multi-exon	TRUE	canonical	3	19	junction_4	2.91547594742265	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAGTTCTTTTATTTAAA	NA	False	NA	-3	True	AATATA	-14	NA	118931734	118929266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_118930346_118930757_118930825_118930919_118930986_118931173_118931218_118931607
ENSMUSG00000025579.15_0	chr11	+	3360	20	FSM	ENSMUSG00000025579.15	ENSMUST00000026666.13	3363	20	-1	4	-1	-4	multi-exon	TRUE	canonical	3	38	junction_1	100.783495768854	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGTTCTCACGTCACCT	NA	False	NA	15	True	AATAAA	-16	NA	119158850	119176276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119158918_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
ENSMUSG00000025579.15_1	chr11	+	3453	20	FSM	ENSMUSG00000025579.15	ENSMUST00000106259.9	3633	20	176	4	35	-4	multi-exon	FALSE	canonical	3	393	junction_7	40.3001893687597	986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGTTCTCACGTCACCT	NA	False	NA	15	True	AATAAA	-16	NA	119158888	119176276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
ENSMUSG00000025579.15_42	chr11	+	3036	19	ISM	ENSMUSG00000025579.15	ENSMUST00000026666.13	3363	20	2319	4	-171	-4	3prime_fragment	FALSE	canonical	3	393	junction_6	41.3868008421842	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGTTCTCACGTCACCT	NA	False	NA	15	True	AATAAA	-16	NA	119161170	119176276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
ENSMUSG00000025580.16_0	chr11	-	1448	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	60	1	-11	0	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	1309	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGAGTGCAGATCTTTG	NA	False	NA	-11	True	ATTAAA	-19	NA	119190855	119179189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
ENSMUSG00000025582.5_0	chr11	-	5493	4	ISM	ENSMUSG00000025582.5	ENSMUST00000026670.5	5217	5	1	9	1	-9	intron_retention	FALSE	canonical	3	52	junction_3	8.17856276425687	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACTGTGGTCTCAT	NA	False	NA	NA	False	AGTAAA	-6	NA	119438578	119429553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_119433521_119434007_119434188_119435417_119435663_119437477
ENSMUSG00000025582.5_1	chr11	-	5207	5	FSM	ENSMUSG00000025582.5	ENSMUST00000026670.5	5217	5	1	9	1	-9	multi-exon	FALSE	canonical	3	52	junction_3	7.08872343937891	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACTGTGGTCTCAT	NA	False	NA	NA	False	AGTAAA	-6	NA	119438578	119429553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_119433521_119434007_119434188_119435417_119435663_119437477_119437686_119437971
ENSMUSG00000025582.5_2	chr11	-	3135	1	ISM	ENSMUSG00000025582.5	ENSMUST00000026670.5	5217	5	5891	9	5891	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACTGTGGTCTCAT	NA	False	NA	NA	False	AGTAAA	-6	NA	119432688	119429553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_119429600_119432700
ENSMUSG00000025582.5_3	chr11	-	7302	3	ISM	ENSMUSG00000025582.5	ENSMUST00000026670.5	5217	5	7	9	7	-9	intron_retention	FALSE	canonical	3	67	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACTGTGGTCTCAT	NA	False	NA	NA	False	AGTAAA	-6	NA	119438572	119429553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_119433521_119434007_119434188_119435417
ENSMUSG00000025583.16_0	chr11	+	6730	34	FSM	ENSMUSG00000025583.16	ENSMUST00000026671.13	6594	34	-137	1	-3	-1	multi-exon	TRUE	canonical	3	92	junction_14	15.8664073872836	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCGCTGCCCTTGCCA	2167	False	NA	7	True	AATAAA	-14	NA	119493837	119790232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119494798_119548489_119548593_119562103_119562187_119615835_119615995_119634692_119634840_119647064_119647241_119671368_119671429_119689594_119689696_119690147_119690293_119702770_119702847_119707903_119708006_119712486_119712571_119713736_119713848_119734507_119734583_119737183_119737250_119737578_119737771_119742152_119742294_119747092_119747211_119748138_119748280_119748661_119748821_119756377_119756497_119762320_119762425_119763041_119763226_119764979_119765091_119775749_119775856_119777862_119777978_119779367_119779493_119781939_119782045_119783377_119783485_119785081_119785210_119785744_119785832_119786728_119786846_119787245_119787376_119788239
ENSMUSG00000025583.16_3	chr11	+	3531	22	NIC	ENSMUSG00000025583.16	novel	6594	34	NA	NA	0	-20	combination_of_known_junctions	FALSE	canonical	1	1	junction_21	24.7230464333041	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAACAGTTATTACAGTTT	2170	False	NA	NA	False	ATTAAA	-5	NA	119493840	119758195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_119494798_119548489_119548593_119562103_119562187_119615835_119615995_119634692_119634840_119647064_119647241_119671368_119671429_119689594_119689696_119690147_119690293_119702770_119702847_119707903_119708006_119712486_119712571_119713736_119713848_119734507_119734583_119737183_119737250_119737578_119737771_119742152_119742294_119747092_119747211_119748138_119748280_119748661_119748821_119756377_119756497_119757979
ENSMUSG00000025583.16_34	chr11	+	4721	24	ISM	ENSMUSG00000025583.16	ENSMUST00000147781.8	6138	33	213379	170	5831	-1	3prime_fragment	FALSE	canonical	3	92	junction_4	16.7183948361654	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCGCTGCCCTTGCCA	NA	False	NA	7	True	AATAAA	-14	NA	119707902	119790232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119708006_119712486_119712571_119713736_119713848_119734507_119734583_119737183_119737250_119737578_119737771_119742152_119742294_119747092_119747211_119748138_119748280_119748661_119748821_119756377_119756497_119762320_119762425_119763041_119763226_119764979_119765091_119775749_119775856_119777862_119777978_119779367_119779493_119781939_119782045_119783377_119783485_119785081_119785210_119785744_119785832_119786728_119786846_119787245_119787376_119788239
ENSMUSG00000025583.16_51	chr11	+	1546	1	ISM	ENSMUSG00000025583.16	ENSMUST00000026671.13	6594	34	294712	1	40417	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCGCTGCCCTTGCCA	NA	False	NA	7	True	AATAAA	-14	NA	119788686	119790232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119788700_119790200
ENSMUSG00000025584.18_0	chr7	+	4055	22	FSM	ENSMUSG00000025584.18	ENSMUST00000026672.8	3802	22	-258	5	-258	-5	multi-exon	FALSE	canonical	3	151	junction_8	20.0953509362663	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTTATTTGTTGCCAT	849	False	NA	2	True	ATTAAA	-13	NA	80863085	80984276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_80863837_80930925_80930983_80932570_80932762_80941984_80942042_80942879_80942935_80945425_80945515_80950387_80950467_80951902_80952041_80956442_80956532_80958552_80958605_80958686_80958730_80964857_80964936_80966709_80966781_80967033_80967196_80968815_80968865_80969070_80969207_80970399_80970599_80973763_80973982_80975998_80976129_80977775_80977944_80982617_80982748_80983163
ENSMUSG00000025586.18_0	chr7	-	3099	12	NIC	ENSMUSG00000025586.18	novel	3111	12	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	3	45	junction_5	10.3116719552358	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGTAGTTTTGTCTCT	NA	False	NA	-3	True	AATAAA	-12	NA	81104512	80996776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006656_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104381
ENSMUSG00000025586.18_10	chr7	-	1371	1	ISM	ENSMUSG00000025586.18	ENSMUST00000098331.10	3111	12	106360	2	2112	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTAGTTTTGTCTCTG	NA	False	NA	-2	True	AATAAA	-13	NA	80998146	80996775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_80996800_80998100
ENSMUSG00000025586.18_11	chr7	-	5341	10	NIC	ENSMUSG00000025586.18	novel	3111	12	NA	NA	1	-1	intron_retention	FALSE	canonical	3	48	junction_6	9.89325746202314	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGTAGTTTTGTCTCT	NA	False	NA	-3	True	AATAAA	-12	NA	81104505	80996776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_80999621_81000092_81000188_81001491_81001691_81005622_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104381
ENSMUSG00000025586.18_12	chr7	-	4441	11	NIC	ENSMUSG00000025586.18	novel	2969	11	NA	NA	4	-1	intron_retention	FALSE	canonical	3	45	junction_4	10.8115678788971	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGTAGTTTTGTCTCT	NA	False	NA	-3	True	AATAAA	-12	NA	81104502	80996776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006656_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104381
ENSMUSG00000025586.18_14	chr7	-	3133	12	NIC	ENSMUSG00000025586.18	novel	1777	12	NA	NA	-40	-4	combination_of_known_junctions	FALSE	canonical	3	7	junction_10	18.5343103771633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAGTTGTAGTTTTGTC	NA	False	NA	-6	True	AATAAA	-9	NA	81104546	80996779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006656_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021952_81085950_81086126_81104381
ENSMUSG00000025586.18_20	chr7	-	3209	12	NIC	ENSMUSG00000025586.18	novel	2969	11	NA	NA	10	-4	combination_of_known_junctions	FALSE	canonical	3	9	junction_11	18.2548533114207	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAGTTGTAGTTTTGTC	NA	False	NA	-6	True	AATAAA	-9	NA	81105203	80996779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006656_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104959
ENSMUSG00000025586.18_3	chr7	-	3245	12	NIC	ENSMUSG00000025586.18	novel	3111	12	NA	NA	-8	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_11	19.84068780466	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGTAGTTTTGTCTCT	NA	False	NA	-3	True	AATAAA	-12	NA	81105221	80996776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006641_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104959
ENSMUSG00000025586.18_7	chr7	-	3107	12	FSM	ENSMUSG00000025586.18	ENSMUST00000098331.10	3111	12	1	3	1	-1	multi-exon	FALSE	canonical	3	28	junction_5	13.4250290487089	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGTAGTTTTGTCTCT	NA	False	NA	-3	True	AATAAA	-12	NA	81104505	80996776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006641_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104381
ENSMUSG00000025591.7_1	chr8	-	1050	7	FSM	ENSMUSG00000025591.7	ENSMUST00000143972.2	3150	7	-23	2123	1	-2123	multi-exon	FALSE	canonical	3	118	junction_5	270.629153804406	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGTATGTAAGAATTTGC	NA	False	NA	-13	True	AATAAA	-17	NA	66939172	66929104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935252_66936709_66936823_66939063
ENSMUSG00000025591.7_3	chr8	-	2504	6	NIC	ENSMUSG00000025591.7	novel	3150	7	NA	NA	1	-2127	intron_retention	FALSE	canonical	3	740	junction_4	84.295670114188	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATCTGTATGTAAGAAT	NA	False	NA	-17	True	AATAAA	-13	NA	66939172	66929108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66936823_66939063
ENSMUSG00000025591.7_4	chr8	-	990	7	FSM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	-1	3339	1	-2127	multi-exon	FALSE	canonical	3	650	junction_5	98.3165239870129	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATCTGTATGTAAGAAT	NA	False	NA	-17	True	AATAAA	-13	NA	66939172	66929108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
ENSMUSG00000025592.18_3	chrX	+	3765	9	ISM	ENSMUSG00000025592.18	ENSMUST00000113382.8	5155	12	406521	397	-19571	-397	3prime_fragment	FALSE	canonical	1	2	junction_4	2.80345768650073	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTTTTCAAAAACTG	NA	False	NA	NA	False	AATAAA	-8	NA	112614474	112743556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_112614565_112633941_112634115_112659967_112660104_112662516_112662601_112724539_112724689_112724813_112724962_112727319_112727467_112729645_112729712_112740784
ENSMUSG00000025602.14_0	chr9	+	3446	7	FSM	ENSMUSG00000025602.14	ENSMUST00000168691.2	3873	7	0	427	0	-12	multi-exon	FALSE	canonical	0	0	junction_3	1.25830573921179	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAGATATACATCTATG	NA	False	NA	NA	False	ATTAAA	-8	NA	40103611	40124473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_40103734_40118494_40118987_40119600_40119812_40120173_40120263_40121062_40121193_40121736_40121857_40122191
ENSMUSG00000025602.14_1	chr9	+	3465	7	FSM	ENSMUSG00000025602.14	ENSMUST00000026693.14	3461	7	-6	2	-5	-2	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATCTATGCCTGGTTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	40103606	40124483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_40103734_40118494_40118991_40119600_40119812_40120173_40120263_40121062_40121193_40121736_40121857_40122191
ENSMUSG00000025607.16_0	chr6	-	375	1	ISM	ENSMUSG00000025607.16	ENSMUST00000048774.13	3961	24	124894	853	124581	5	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGTTGCTATACTTGAAA	NA	False	NA	-9	True	AATAAA	-20	NA	30748780	30748405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_30748400_30748800
ENSMUSG00000025607.16_1	chr6	-	3115	24	FSM	ENSMUSG00000025607.16	ENSMUST00000048774.13	3961	24	-12	858	-3	0	multi-exon	FALSE	canonical	3	177	junction_15	22.2825132553629	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAAGTTGCTATACT	NA	False	NA	-14	True	AATAAA	-15	NA	30873686	30748410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
ENSMUSG00000025607.16_8	chr6	-	1802	11	ISM	ENSMUSG00000025607.16	ENSMUST00000048774.13	3961	24	80600	858	80287	0	3prime_fragment	FALSE	canonical	3	182	junction_6	22.113344387496	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAAGTTGCTATACT	NA	False	NA	-14	True	AATAAA	-15	NA	30793074	30748410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865
ENSMUSG00000025608.10_0	chr6	-	2223	1	ISM	ENSMUSG00000025608.10	ENSMUST00000026698.8	5379	8	42264	7	2594	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGGTTCAGGCCCTAGT	NA	False	NA	-6	True	AATAAA	-14	NA	31498652	31496429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_31496400_31498700
ENSMUSG00000025608.10_1	chr6	-	5312	8	FSM	ENSMUSG00000025608.10	ENSMUST00000026698.8	5379	8	59	8	59	-8	multi-exon	FALSE	canonical	3	33	junction_2	7.96164273891016	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTGGTTCAGGCCCTAG	NA	False	NA	-7	True	AATAAA	-13	NA	31540857	31496430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_31500155_31501239_31501408_31501604_31501667_31501873_31502028_31503136_31503209_31503481_31503691_31505392_31505972_31540513
ENSMUSG00000025608.10_10	chr6	-	2730	9	NIC	ENSMUSG00000025608.10	novel	5379	8	NA	NA	67	813	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	19.9808502071358	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCCGTCTGCTTCTGC	NA	False	NA	0	True	NA	NA	NA	31540849	31499113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_31500155_31500362_31500472_31501239_31501408_31501604_31501667_31501873_31502028_31503136_31503209_31503481_31503691_31505392_31505972_31540513
ENSMUSG00000025608.10_2	chr6	-	4736	7	ISM	ENSMUSG00000025608.10	ENSMUST00000026698.8	5379	8	35178	7	-4492	-7	3prime_fragment	FALSE	canonical	3	33	junction_2	8.24115687671741	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGGTTCAGGCCCTAGT	NA	False	NA	-6	True	AATAAA	-14	NA	31505738	31496429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_31500155_31501239_31501408_31501604_31501667_31501873_31502028_31503136_31503209_31503481_31503691_31505392
ENSMUSG00000025609.16_10	chr6	+	2449	18	NIC	ENSMUSG00000025609.16	novel	11395	18	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	1	20	junction_5	167.370359891596	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATTATGTATATTTTT	NA	False	NA	13	True	AATAAA	-21	NA	31375771	31484899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409870_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
ENSMUSG00000025609.16_49	chr6	+	3529	1	ISM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	109633	4915	15747	3928	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAATGTGTGTGCCATTT	NA	False	NA	NA	False	ATTAAA	-43	NA	31485302	31488831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_31485300_31488800
ENSMUSG00000025609.16_5	chr6	+	2443	18	FSM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	105	8847	4	-4	multi-exon	FALSE	canonical	1	225	junction_9	99.990726213583	897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATTATGTATATTTTT	NA	False	NA	13	True	AATAAA	-21	NA	31375774	31484899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
ENSMUSG00000025612.6_0	chr16	+	5826	5	FSM	ENSMUSG00000025612.6	ENSMUST00000026703.6	5867	5	35	6	15	-6	multi-exon	FALSE	canonical	1	4	junction_3	14.497844667398	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCGACTAGAGTTGTACAT	NA	False	NA	16	True	AATAAA	-19	NA	87495867	87530228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_87495945_87512218_87512513_87515694_87517039_87519289_87519497_87526324
ENSMUSG00000025612.6_1	chr16	+	2280	4	FSM	ENSMUSG00000025612.6	ENSMUST00000156958.2	2210	4	-78	8	-19	-8	multi-exon	FALSE	canonical	3	4	junction_3	14.0079342596338	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATACTTTATGATGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	87495813	87519800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_87495945_87512218_87512513_87515694_87517039_87519289
ENSMUSG00000025612.6_5	chr16	+	4969	3	ISM	ENSMUSG00000025612.6	ENSMUST00000026703.6	5867	5	20130	224	20071	-224	3prime_fragment	FALSE	canonical	1	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATGATTTTTTTGTATC	NA	False	NA	-61	True	NA	NA	NA	87515962	87530010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_87517039_87519289_87519497_87526324
ENSMUSG00000025612.6_6	chr16	+	1545	1	ISM	ENSMUSG00000025612.6	ENSMUST00000026703.6	5867	5	32699	158	32640	-158	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCCTGTCCTATTAAGC	NA	False	NA	5	True	AATAAA	-15	NA	87528531	87530076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_87528500_87530100
ENSMUSG00000025613.14_0	chr16	-	1830	15	FSM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	14	550	0	112	multi-exon	FALSE	canonical	3	4287	junction_9	381.591725405517	5020	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCCGTCTGTTTAATCAC	NA	False	NA	-25	True	AATAAA	-13	NA	87292747	87280763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
ENSMUSG00000025616.15_0	chr16	+	2872	18	FSM	ENSMUSG00000025616.15	ENSMUST00000026710.12	3205	18	325	8	1	-8	multi-exon	FALSE	canonical	3	153	junction_5	31.0441141639032	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAACTTGTTTTATTAGA	NA	False	NA	2	True	AATAAA	-10	NA	87251915	87280397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
ENSMUSG00000025616.15_4	chr16	+	2869	18	NIC	ENSMUSG00000025616.15	novel	3205	18	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	55.1537642982143	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAACTTGTTTTATTAGA	NA	False	NA	2	True	AATAAA	-10	NA	87251915	87280397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266565_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
ENSMUSG00000025626.17_0	chrX	+	4349	11	FSM	ENSMUSG00000025626.17	ENSMUST00000078944.13	4350	11	-2	3	-2	-3	multi-exon	FALSE	canonical	3	199	junction_10	29.4423164849507	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGTCTGTGTCTGCTTTG	NA	False	NA	14	True	AATAAA	-14	NA	52001140	52045817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_52001314_52005429_52005614_52006042_52006145_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
ENSMUSG00000025630.9_0	chrX	+	1309	9	FSM	ENSMUSG00000025630.9	ENSMUST00000026723.9	1289	9	-27	7	-27	-7	multi-exon	FALSE	canonical	3	2155	junction_4	129.05328356923	1339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCGCCACTTTTTGA	NA	False	NA	5	True	AATAAA	-9	NA	52076986	52110529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52101153_52101172_52105223_52105307_52108981_52109029_52109199_52109277_52109943
ENSMUSG00000025645.9_0	chr9	+	1509	4	FSM	ENSMUSG00000025645.9	ENSMUST00000026735.9	1526	4	13	4	13	-4	multi-exon	FALSE	canonical	3	70	junction_1	5.71547606649408	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGTAGTTATATCAGAC	NA	False	NA	10	True	ATTAAA	-24	NA	108911573	108921553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108911636_108918404_108918716_108919908_108920074_108920582
ENSMUSG00000025645.9_5	chr9	+	1435	3	ISM	ENSMUSG00000025645.9	ENSMUST00000026735.9	1526	4	6859	1	6859	-1	3prime_fragment	FALSE	canonical	3	81	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTAGTTATATCAGACTCA	3766	False	NA	13	True	ATTAAA	-27	NA	108918419	108921556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108918716_108919908_108920074_108920582
ENSMUSG00000025645.9_6	chr9	+	3897	1	NIC	ENSMUSG00000025645.9	novel	1526	4	NA	NA	6096	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGTAGTTATATCAGAC	3003	False	NA	10	True	ATTAAA	-24	NA	108917656	108921553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108917700_108921600
ENSMUSG00000025646.10_12	chr9	-	2536	13	NIC	ENSMUSG00000025646.10	novel	2572	13	NA	NA	22	-7	combination_of_known_junctions	FALSE	canonical	3	15	junction_4	38.7092976198513	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAAGCTTTGTTTCCTG	NA	False	NA	-6	True	ATTAAA	-19	NA	108903166	108888821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108888977_108889330_108889581_108889696_108889778_108890177_108890267_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
ENSMUSG00000025646.10_18	chr9	-	2707	8	ISM	ENSMUSG00000025646.10	ENSMUST00000161521.8	2381	12	-48	4462	20	3218	5prime_fragment	FALSE	canonical	3	126	junction_6	12.2407816210354	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAAAGTATAAGTTCC	NA	False	NA	NA	False	NA	NA	NA	108903168	108893314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
ENSMUSG00000025646.10_2	chr9	-	4097	14	NIC	ENSMUSG00000025646.10	novel	4215	14	NA	NA	15	-7	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	34.9887555902104	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCACTGACTGCTTGCCG	NA	False	NA	-9	True	AATAAA	-8	NA	108903173	108887010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108887997_108888256_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
ENSMUSG00000025646.10_6	chr9	-	2546	13	FSM	ENSMUSG00000025646.10	ENSMUST00000045011.9	2572	13	19	7	15	-7	multi-exon	FALSE	canonical	3	123	junction_2	14.834971819619	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAAGCTTTGTTTCCTG	NA	False	NA	-6	True	ATTAAA	-19	NA	108903173	108888821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
ENSMUSG00000025647.17_0	chr9	+	1809	6	FSM	ENSMUSG00000025647.17	ENSMUST00000026737.12	1834	6	19	6	2	-6	multi-exon	FALSE	canonical	3	153	junction_2	42.9678949914934	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGCTTCCCCTTTCTTCA	NA	False	NA	12	True	AATAAA	-12	NA	108867671	108886786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885162_108885354_108885574_108885717
ENSMUSG00000025647.17_1	chr9	+	1810	6	FSM	ENSMUSG00000025647.17	ENSMUST00000112059.10	1910	6	41	59	4	-6	multi-exon	FALSE	canonical	3	51	junction_2	78.9186923358465	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGCTTCCCCTTTCTTCA	NA	False	NA	12	True	AATAAA	-12	NA	108867673	108886786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108867833_108869937_108870095_108880431_108880522_108885045_108885162_108885354_108885574_108885717
ENSMUSG00000025647.17_8	chr9	+	1500	4	FSM	ENSMUSG00000025647.17	ENSMUST00000154184.5	1038	4	49	-511	-36	-6	multi-exon	FALSE	canonical	3	51	junction_1	98.8005847935909	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGCTTCCCCTTTCTTCA	NA	False	NA	12	True	AATAAA	-12	NA	108883979	108886786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108884076_108885045_108885162_108885354_108885574_108885717
ENSMUSG00000025648.19_11	chr9	+	3355	15	NNC	ENSMUSG00000025648.19	novel	3488	14	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	4.23300925429402	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAACAAACAAAC	NA	False	NA	NA	False	AATAAA	-7	NA	108821032	108861265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_108821181_108827926_108828044_108828180_108828278_108834639_108834707_108836351_108836427_108836759_108836817_108837416_108837539_108838654_108838740_108839516_108839725_108840225_108840373_108854114_108854220_108856587_108856718_108856812_108856876_108857961_108858027_108859396
ENSMUSG00000025648.19_3	chr9	+	3281	14	FSM	ENSMUSG00000025648.19	ENSMUST00000198140.5	3488	14	176	31	6	0	multi-exon	FALSE	canonical	3	8	junction_7	3.73057097014835	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAACAAACAAAC	NA	False	NA	NA	False	AATAAA	-7	NA	108821021	108861265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108821181_108827926_108828044_108828180_108828278_108834639_108834707_108836351_108836427_108836759_108836817_108837416_108837539_108839516_108839725_108840225_108840373_108854114_108854220_108856587_108856718_108856812_108856876_108857961_108858027_108859396
ENSMUSG00000025651.15_0	chr9	+	1581	13	FSM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	68	4	-13	0	multi-exon	FALSE	canonical	3	5755	junction_3	194.83802033142	5835	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGTGTTGTCCTTCCT	NA	False	NA	14	True	AATAAA	-10	NA	108765768	108778687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
ENSMUSG00000025656.18_0	chrX	-	2579	11	NIC	ENSMUSG00000025656.18	novel	4578	11	NA	NA	-11	-1	intron_retention	FALSE	canonical	0	0	junction_1	0.916515138991168	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTTTTTTTCGGAGAAG	2796	False	NA	NA	False	AATAAA	-20	NA	94210117	94095526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_94095761_94097834_94097897_94098548_94098618_94102422_94102667_94114778_94114911_94121044_94121175_94125083_94125317_94144562_94144743_94155960_94156153_94174441_94174622_94209194
ENSMUSG00000025658.17_0	chrX	-	5672	21	NIC	ENSMUSG00000025658.17	novel	5738	22	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_12	3.87298334620742	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATCCCTGTAAAGCAC	NA	False	NA	NA	False	AATAAA	-11	NA	156826314	156604431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_156606833_156609352_156609550_156636090_156636632_156639555_156639657_156643564_156643633_156648825_156648898_156649586_156649661_156654640_156654814_156655100_156655150_156671393_156671609_156689665_156689878_156693112_156693247_156702741_156702889_156717635_156717705_156722991_156723052_156728292_156728413_156744249_156744292_156773103_156773192_156776726_156776930_156779516_156779681_156825772
ENSMUSG00000025658.17_1	chrX	-	3943	21	NIC	ENSMUSG00000025658.17	novel	5738	22	NA	NA	-66	-1714	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	4.24381903478459	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTTAATGCTGTAGTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	156826356	156606145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_156606833_156609352_156609550_156636090_156636632_156639555_156639657_156643564_156643633_156648825_156648898_156649586_156649661_156654640_156654814_156655100_156655150_156671393_156671609_156673078_156673169_156689665_156689878_156693112_156693247_156717635_156717705_156722991_156723052_156728292_156728413_156744249_156744292_156773103_156773192_156776726_156776930_156779516_156779681_156825772
ENSMUSG00000025658.17_13	chrX	-	650	1	Genic_Genomic	ENSMUSG00000025658.17	novel	NA	NA	NA	NA	44790	4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCCTGTAAAGCACCGAC	NA	False	NA	NA	False	AATAAA	-15	NA	156605077	156604427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_156604400_156605100
ENSMUSG00000025658.17_4	chrX	-	5794	22	FSM	ENSMUSG00000025658.17	ENSMUST00000026750.15	5738	22	-63	7	-63	-7	multi-exon	FALSE	canonical	2	5	junction_13	3.75315438004534	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCTTAATGAATCCCTGT	NA	False	NA	NA	False	AATAAA	-4	NA	156826353	156604438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_156606833_156609352_156609550_156636090_156636632_156639555_156639657_156643564_156643633_156648825_156648898_156649586_156649661_156654640_156654814_156655100_156655150_156671393_156671609_156673078_156673169_156689665_156689878_156693112_156693247_156702741_156702889_156717635_156717705_156722991_156723052_156728292_156728413_156744249_156744292_156773103_156773192_156776726_156776930_156779516_156779681_156825772
ENSMUSG00000025658.17_5	chrX	-	2530	3	ISM	ENSMUSG00000025658.17	ENSMUST00000026750.15	5738	22	190140	128	13717	-128	3prime_fragment	FALSE	canonical	3	6	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTTATAAGACTAGCCTA	NA	False	NA	NA	False	ATTAAA	-23	NA	156636150	156604559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_156606833_156609352_156609550_156636090
ENSMUSG00000025658.17_9	chrX	-	3814	20	NIC	ENSMUSG00000025658.17	novel	5738	22	NA	NA	-31	-1718	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	4.36873809883098	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAAAGTTTAATGCTGTA	NA	False	NA	NA	False	ATTAAA	-27	NA	156826321	156606149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_156606833_156609352_156609550_156636090_156636632_156639555_156639657_156643564_156643633_156648825_156648898_156649586_156649661_156654640_156654814_156655100_156655150_156671393_156671609_156689665_156689878_156693112_156693247_156717635_156717705_156722991_156723052_156728292_156728413_156744249_156744292_156773103_156773192_156776726_156776930_156779516_156779681_156825772
ENSMUSG00000025665.17_0	chrX	-	4109	23	FSM	ENSMUSG00000025665.17	ENSMUST00000096348.10	4151	23	31	11	31	-10	multi-exon	FALSE	canonical	3	237	junction_4	39.3304500040447	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAACAGCATCATTTAGT	NA	False	NA	-17	True	ATTAAA	-20	NA	110372861	110297899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
ENSMUSG00000025665.17_2	chrX	-	4092	23	FSM	ENSMUSG00000025665.17	ENSMUST00000113428.9	4135	23	33	10	33	-10	multi-exon	FALSE	canonical	3	139	junction_4	54.455987232393	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAACAGCATCATTTAGT	NA	False	NA	-17	True	ATTAAA	-20	NA	110372859	110297899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
ENSMUSG00000025665.17_3	chrX	-	4244	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	-13	-10	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	62.1628144548264	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAACAGCATCATTTAGT	NA	False	NA	-17	True	ATTAAA	-20	NA	110373165	110297899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
ENSMUSG00000025665.17_6	chrX	-	4204	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	12	-10	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	71.6464486948656	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAACAGCATCATTTAGT	NA	False	NA	-17	True	ATTAAA	-20	NA	110373140	110297899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
ENSMUSG00000025666.17_0	chrX	+	4039	3	FSM	ENSMUSG00000025666.17	ENSMUST00000026760.3	4007	3	-40	8	-22	-8	multi-exon	TRUE	canonical	3	148	junction_2	10.5	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACAATGCTCTTACTTT	NA	False	NA	10	True	ATTAAA	-16	NA	80114281	80141470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_80114767_80127896_80128038_80138057
ENSMUSG00000025666.17_8	chrX	+	2694	1	ISM	ENSMUSG00000025666.17	ENSMUST00000026760.3	4007	3	24186	277	24186	-277	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATAGTTTCTTTCCTGCT	NA	False	NA	10	True	AATAAA	-23	NA	80138507	80141201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_80138500_80141200
ENSMUSG00000025701.13_1	chr6	-	2704	14	FSM	ENSMUSG00000025701.13	ENSMUST00000026795.13	2821	14	11	106	11	91	multi-exon	FALSE	canonical	0	0	junction_2	0.923076923076923	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACCTCCTCCAACTGACA	NA	False	NA	NA	False	AATAAA	-12	NA	116438128	116387143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_116387860_116389420_116389592_116390082_116390184_116390402_116390525_116390698_116390878_116391483_116391571_116392334_116392539_116397201_116397349_116400103_116400277_116401097_116401205_116404103_116404227_116425230_116425313_116431077_116431277_116437835
ENSMUSG00000025702.16_0	chr6	+	4441	8	FSM	ENSMUSG00000025702.16	ENSMUST00000079012.13	4450	8	0	9	0	-7	multi-exon	FALSE	canonical	2	9	junction_1	11.0564414690796	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGGAATTTTGTGATGA	NA	False	NA	1	True	AATAAA	-11	NA	116314984	116386492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_116315177_116315346_116315452_116353653_116353825_116369484_116369536_116377997_116378084_116380380_116380562_116382595_116382744_116382985
ENSMUSG00000025702.16_1	chr6	+	4605	7	FSM	ENSMUSG00000025702.16	ENSMUST00000101032.10	4611	7	-3	9	-3	-7	multi-exon	FALSE	canonical	3	24	junction_1	7.30296743340222	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGGAATTTTGTGATGA	NA	False	NA	1	True	AATAAA	-11	NA	116314990	116386492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_116315452_116353653_116353825_116369484_116369536_116377997_116378084_116380380_116380562_116382595_116382744_116382985
ENSMUSG00000025702.16_11	chr6	+	6722	7	NIC	ENSMUSG00000025702.16	novel	4450	8	NA	NA	-2	-5	intron_retention	FALSE	canonical	2	9	junction_1	11.8883696667513	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAATTTTGTGATGAGA	NA	False	NA	3	True	AATAAA	-13	NA	116315002	116386494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_116315177_116315346_116315452_116353653_116353825_116369484_116369536_116377997_116380562_116382595_116382744_116382985
ENSMUSG00000025702.16_17	chr6	+	2419	1	ISM	ENSMUSG00000025702.16	ENSMUST00000079012.13	4450	8	69091	7	1938	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAATTTTGTGATGAGA	NA	False	NA	3	True	AATAAA	-13	NA	116384075	116386494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_116384100_116386500
ENSMUSG00000025702.16_22	chr6	+	1543	1	FSM	ENSMUSG00000025702.16	ENSMUST00000205066.2	3107	1	1564	0	1016	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116328909	116330452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_116328900_116330500
ENSMUSG00000025702.16_5	chr6	+	4336	7	NIC	ENSMUSG00000025702.16	novel	4450	8	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	11.9256958799989	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGGAATTTTGTGATGA	NA	False	NA	1	True	AATAAA	-11	NA	116314984	116386492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_116315177_116353653_116353825_116369484_116369536_116377997_116378084_116380380_116380562_116382595_116382744_116382985
ENSMUSG00000025722.17_0	chr7	-	3137	7	FSM	ENSMUSG00000025722.17	ENSMUST00000152518.8	3142	7	-2	7	0	-7	multi-exon	FALSE	canonical	3	95	junction_6	17.3365381652611	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTATTTATTTTGTGT	NA	False	NA	-11	True	AATAAA	-8	NA	80550982	80540478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
ENSMUSG00000025722.17_1	chr7	-	1543	8	FSM	ENSMUSG00000025722.17	ENSMUST00000026816.15	2114	8	33	538	-2	0	multi-exon	FALSE	canonical	3	95	junction_7	16.071269840486	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGCAATTAGCAATTTA	NA	False	NA	-7	True	AATAAA	-20	NA	80550984	80541008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
ENSMUSG00000025722.17_10	chr7	-	2178	6	ISM	ENSMUSG00000025722.17	ENSMUST00000139990.8	2549	7	37	541	24	-4	intron_retention	FALSE	canonical	3	120	junction_4	8.3282651254628	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTAAGAAGCAATTAGCAA	NA	False	NA	-11	True	AATAAA	-16	NA	80550943	80541012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095
ENSMUSG00000025722.17_2	chr7	-	3011	6	FSM	ENSMUSG00000025722.17	ENSMUST00000135905.8	3080	6	65	4	50	-4	multi-exon	FALSE	canonical	3	120	junction_3	8.49941174435031	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTAAGAAGCAATTAGCAA	NA	False	NA	-11	True	AATAAA	-16	NA	80550917	80541012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391
ENSMUSG00000025722.17_3	chr7	-	1461	7	NIC	ENSMUSG00000025722.17	novel	2114	8	NA	NA	-2	7	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	46.1173021278951	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAGCAATTTACTTAGTT	NA	False	NA	0	True	AATAAA	-27	NA	80550984	80541001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80550095_80550185_80550391_80550460_80550932
ENSMUSG00000025722.17_5	chr7	-	2295	8	NIC	ENSMUSG00000025722.17	novel	2114	8	NA	NA	50	-7	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	45.3332332932069	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTATTTATTTTGTGT	NA	False	NA	-11	True	AATAAA	-8	NA	80550917	80540478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550643
ENSMUSG00000025722.17_6	chr7	-	1999	7	FSM	ENSMUSG00000025722.17	ENSMUST00000139990.8	2549	7	-2	552	0	-15	multi-exon	FALSE	canonical	3	120	junction_4	7.94599829404014	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAATACAAGTAAGAA	NA	False	NA	-22	True	AATAAA	-5	NA	80550982	80541023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391
ENSMUSG00000025722.17_7	chr7	-	1182	1	NIC	ENSMUSG00000025722.17	novel	2114	8	NA	NA	8592	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTATTTATTTTGTGT	NA	False	NA	-11	True	AATAAA	-8	NA	80541660	80540478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_80540500_80541700
ENSMUSG00000025723.13_0	chr7	-	707	3	FSM	ENSMUSG00000025723.13	ENSMUST00000026817.11	705	3	-9	7	-9	-1	multi-exon	FALSE	canonical	2	13	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAGAATGTCTGGGCCTC	NA	False	NA	NA	False	AATAAA	-14	NA	80554833	80551982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80552252_80553881_80554055_80554568
ENSMUSG00000025724.13_0	chr7	-	923	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	233	189	-2	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCCCAGTGTTTGTAT	1618	False	NA	-11	True	ATTAAA	-11	NA	80597295	80565313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ENSMUSG00000025726.12_0	chr7	+	2879	18	FSM	ENSMUSG00000025726.12	ENSMUST00000026820.11	2846	18	-34	1	-34	-1	multi-exon	FALSE	canonical	0	0	junction_4	56.988677318925	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTTGTGTGTACAGTGT	NA	False	NA	10	True	AATAAA	-19	NA	80764512	80820163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_80764626_80765270_80765383_80766232_80766322_80767348_80767441_80771794_80771979_80774615_80774758_80775908_80776023_80777459_80777538_80787909_80787991_80791711_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
ENSMUSG00000025726.12_12	chr7	+	1786	8	NIC	ENSMUSG00000025726.12	novel	2846	18	NA	NA	27067	-10	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	42.0490481340493	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCTTTACTATTTGTGT	NA	False	NA	1	True	AATAAA	-10	NA	80791664	80820154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_80791793_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
ENSMUSG00000025726.12_17	chr7	+	1725	7	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	46057	1	46057	-1	3prime_fragment	FALSE	canonical	3	109	junction_1	6.7433094413813	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTTGTGTGTACAGTGT	7138	False	NA	10	True	AATAAA	-19	NA	80810654	80820163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
ENSMUSG00000025726.12_22	chr7	+	1935	3	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	53265	2	53265	-2	3prime_fragment	FALSE	canonical	3	128	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTTGTGTGTACAGTG	NA	False	NA	9	True	AATAAA	-18	NA	80817862	80820162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_80818811_80818914_80819027_80819287
ENSMUSG00000025726.12_4	chr7	+	1956	9	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	27030	3	27030	-3	3prime_fragment	FALSE	canonical	3	108	junction_1	7.38135319572231	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTATTTGTGTGTACAGT	NA	False	NA	8	True	AATAAA	-17	NA	80791627	80820161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
ENSMUSG00000025728.17_2	chr17	-	3051	11	FSM	ENSMUSG00000025728.17	ENSMUST00000026823.16	3173	11	114	8	-1	-1	multi-exon	FALSE	canonical	3	238	junction_4	23.9309423132479	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACCAGCTTGGGTGTCC	NA	False	NA	-7	True	AATAAA	-16	NA	26160908	26145402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
ENSMUSG00000025728.17_26	chr17	-	2659	8	NIC	ENSMUSG00000025728.17	novel	3233	12	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	4	junction_4	100.888501802328	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACCAGCTTGGGTGTCC	NA	False	NA	-7	True	AATAAA	-16	NA	26160909	26145402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26153731_26153853_26153976_26154109_26155737_26156437_26160788
ENSMUSG00000025730.15_0	chr17	-	2452	7	FSM	ENSMUSG00000025730.15	ENSMUST00000026826.14	2466	7	9	5	6	-2	multi-exon	FALSE	canonical	3	152	junction_6	27.4104602904317	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGAGCTTGTGTCTGGCTT	NA	False	NA	-6	True	AGTAAA	-12	NA	26138679	26101092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338_26138524_26138625
ENSMUSG00000025730.15_1	chr17	-	2536	6	FSM	ENSMUSG00000025730.15	ENSMUST00000167626.8	2506	6	-35	5	3	-2	multi-exon	FALSE	canonical	3	194	junction_1	13.251415018782	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGAGCTTGTGTCTGGCTT	NA	False	NA	-6	True	AGTAAA	-12	NA	26138661	26101092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338
ENSMUSG00000025730.15_12	chr17	-	1360	1	ISM	ENSMUSG00000025730.15	ENSMUST00000166146.8	2900	8	36082	1	30158	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTGTCTGGCTTCATC	NA	False	NA	-2	True	AGTAAA	-16	NA	26102448	26101088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26101100_26102400
ENSMUSG00000025730.15_13	chr17	-	2455	7	NIC	ENSMUSG00000025730.15	novel	2466	7	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	2	3	junction_6	81.0337721090548	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGAGCTTGTGTCTGGCTT	NA	False	NA	-6	True	AGTAAA	-12	NA	26138669	26101092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338_26138537_26138625
ENSMUSG00000025731.17_1	chr17	+	792	6	FSM	ENSMUSG00000025731.17	ENSMUST00000026827.16	1243	6	441	10	14	-1	multi-exon	FALSE	canonical	3	287	junction_5	67.7542618585724	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACATTGCTTGCTGGGAA	7209	False	NA	29	True	AATAAA	-30	NA	26094488	26096133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634_26095714_26095923
ENSMUSG00000025731.17_2	chr17	+	1006	5	FSM	ENSMUSG00000025731.17	ENSMUST00000169308.8	1026	5	10	10	10	-1	multi-exon	FALSE	canonical	3	348	junction_1	48.8287824955732	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACATTGCTTGCTGGGAA	7205	False	NA	29	True	AATAAA	-30	NA	26094484	26096133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634
ENSMUSG00000025731.17_4	chr17	+	1648	1	NIC	ENSMUSG00000025731.17	novel	1243	6	NA	NA	9	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCACATTGCTTGCTGGG	7204	False	NA	27	True	AATAAA	-28	NA	26094483	26096131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26094500_26096100
ENSMUSG00000025731.17_5	chr17	+	838	4	FSM	ENSMUSG00000025731.17	ENSMUST00000110456.3	891	4	52	1	-14	-1	multi-exon	FALSE	canonical	3	16	junction_1	203.922098415601	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACATTGCTTGCTGGGAA	7210	False	NA	29	True	AATAAA	-30	NA	26094489	26096133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26094701_26095193_26095254_26095468_26095537_26095634
ENSMUSG00000025732.7_0	chr17	-	855	4	ISM	ENSMUSG00000025732.7	ENSMUST00000026828.7	842	5	67	1	25	0	intron_retention	FALSE	canonical	3	256	junction_1	25.0377492776186	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTCGGGTGTTGGTGATT	7829	False	NA	-5	True	AATAAA	-14	NA	26087671	26082672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26083014_26083224_26083327_26083567_26083696_26087387
ENSMUSG00000025732.7_1	chr17	-	816	5	FSM	ENSMUSG00000025732.7	ENSMUST00000026828.7	842	5	25	1	-2	0	multi-exon	FALSE	canonical	3	256	junction_1	22.6770809408971	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTCGGGTGTTGGTGATT	7787	False	NA	-5	True	AATAAA	-14	NA	26087713	26082672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26087387_26087518_26087598
ENSMUSG00000025732.7_12	chr17	-	1024	5	ISM	ENSMUSG00000025732.7	ENSMUST00000237080.2	945	6	1	1	1	0	intron_retention	FALSE	canonical	3	13	junction_4	135.241450746434	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTCGGGTGTTGGTGATT	7793	False	NA	-5	True	AATAAA	-14	NA	26087707	26082672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26083014_26083224_26083327_26083567_26083696_26084508_26084642_26087387
ENSMUSG00000025732.7_13	chr17	-	916	4	NIC	ENSMUSG00000025732.7	novel	842	5	NA	NA	9	-3	intron_retention	FALSE	canonical	3	19	junction_1	131.413681006034	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCTTTCGGGTGTTGGTG	7813	False	NA	-8	True	AATAAA	-11	NA	26087687	26082675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26083014_26083176_26083327_26083567_26083696_26087387
ENSMUSG00000025732.7_7	chr17	-	858	5	NIC	ENSMUSG00000025732.7	novel	945	6	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	117.099049953448	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCGGGTGTTGGTGAT	7792	False	NA	-6	True	AATAAA	-13	NA	26087708	26082673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26083014_26083176_26083327_26083567_26083696_26087387_26087518_26087598
ENSMUSG00000025733.18_0	chr17	-	2849	19	FSM	ENSMUSG00000025733.18	ENSMUST00000043897.16	3189	19	332	8	6	-8	multi-exon	FALSE	canonical	3	133	junction_18	11.3871272350258	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGCAATGTGACTGCTGT	6019	False	NA	-8	True	NA	NA	NA	26063493	26057438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26058469_26058662_26058866_26058958_26059082_26059228_26059310_26059411_26059543_26059624_26059726_26059809_26059953_26060025_26060111_26060335_26060457_26060532_26060642_26060730_26060830_26060963_26061066_26061153_26061263_26061339_26061393_26062080_26062135_26062914_26062959_26063062_26063145_26063228_26063288_26063373
ENSMUSG00000025735.14_3	chr17	-	2050	6	NIC	ENSMUSG00000025735.14	novel	1711	8	NA	NA	-82	-1	intron_retention	FALSE	canonical	2	2	junction_2	3.8262252939418	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGTAGCTGTCCTGGGG	2542	False	NA	NA	False	AATAAA	-14	NA	26056138	26053439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26054172_26054250_26054328_26054443_26054557_26054718_26054868_26054942_26055168_26055384
ENSMUSG00000025736.16_0	chr17	+	1998	9	FSM	ENSMUSG00000025736.16	ENSMUST00000026832.14	2091	9	17	76	-4	-1	multi-exon	FALSE	canonical	3	70	junction_1	9.19238815542512	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTGTCTGCTGGGGGA	NA	False	NA	15	True	AATAAA	-17	NA	26048033	26050740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048915_26049036_26049112_26049181_26049273_26049409_26049483
ENSMUSG00000025736.16_4	chr17	+	942	1	ISM	ENSMUSG00000025736.16	ENSMUST00000133595.9	2268	9	1959	76	987	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTCTGCTGGGGGAG	NA	False	NA	16	True	AATAAA	-18	NA	26049799	26050741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_26049800_26050700
ENSMUSG00000025736.16_6	chr17	+	1987	9	FSM	ENSMUSG00000025736.16	ENSMUST00000152434.9	1951	9	14	-50	2	-25	multi-exon	FALSE	canonical	1	4	junction_5	27.2855272992845	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGTGAGATATGAATGC	NA	False	NA	-8	True	NA	NA	NA	26048039	26050791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048971_26049036_26049112_26049181_26049273_26049409_26049483
ENSMUSG00000025736.16_7	chr17	+	2076	8	NIC	ENSMUSG00000025736.16	novel	2268	9	NA	NA	-6	-1	intron_retention	FALSE	canonical	3	78	junction_5	7.57277616039918	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTGTCTGCTGGGGGA	NA	False	NA	15	True	AATAAA	-17	NA	26048031	26050740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048915_26049036_26049112_26049181_26049273_26049409_26049483
ENSMUSG00000025737.6_0	chr17	+	3060	9	FSM	ENSMUSG00000025737.6	ENSMUST00000026833.6	3099	9	33	6	11	3	multi-exon	FALSE	canonical	3	89	junction_2	16.5529453572468	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCACTTGTCACTT	NA	False	NA	12	True	AATAAA	-14	NA	26042633	26047698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046331_26046401_26046507_26046626_26046968_26047127_26047313_26047388
ENSMUSG00000025737.6_10	chr17	+	3300	7	NIC	ENSMUSG00000025737.6	novel	3099	9	NA	NA	11	3	intron_retention	FALSE	canonical	3	91	junction_4	15.7020876177518	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCACTTGTCACTT	NA	False	NA	12	True	AATAAA	-14	NA	26042633	26047698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26043661_26044627_26045599_26046008_26046128_26046208_26046331_26046401_26046968_26047127_26047313_26047388
ENSMUSG00000025737.6_2	chr17	+	3261	7	NIC	ENSMUSG00000025737.6	novel	3139	8	NA	NA	1	3	intron_retention	FALSE	canonical	3	100	junction_2	13.3499895963339	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCACTTGTCACTT	NA	False	NA	12	True	AATAAA	-14	NA	26042623	26047698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26043661_26044627_26045599_26046008_26046128_26046208_26046507_26046626_26046968_26047127_26047313_26047388
ENSMUSG00000025737.6_3	chr17	+	3137	8	FSM	ENSMUSG00000025737.6	ENSMUST00000160349.2	3139	8	5	-3	5	3	multi-exon	FALSE	canonical	3	89	junction_2	15.8449116277055	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCACTTGTCACTT	NA	False	NA	12	True	AATAAA	-14	NA	26042627	26047698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046507_26046626_26046968_26047127_26047313_26047388
ENSMUSG00000025738.9_0	chr17	+	3503	6	FSM	ENSMUSG00000025738.9	ENSMUST00000045692.9	3489	6	-14	0	-14	0	multi-exon	FALSE	canonical	3	16	junction_5	4.22374241638857	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACAAGTGGGTTATT	NA	False	NA	-3	True	ATTAAA	-9	NA	26028044	26040229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26028361_26035390_26036038_26036653_26037163_26037471_26037557_26037869_26037934_26038347
ENSMUSG00000025738.9_15	chr17	+	2347	4	ISM	ENSMUSG00000025738.9	ENSMUST00000236165.2	2757	5	1554	-528	-186	0	3prime_fragment	FALSE	canonical	3	16	junction_3	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACAAGTGGGTTATT	NA	False	NA	-3	True	ATTAAA	-9	NA	26036846	26040229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_26037163_26037471_26037557_26037869_26037934_26038347
ENSMUSG00000025738.9_2	chr17	+	3530	6	NNC	ENSMUSG00000025738.9	novel	3489	6	NA	NA	-36	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	8.7086164228309	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACAAGTGGGTTATT	NA	False	NA	-3	True	ATTAAA	-9	NA	26028022	26040229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_26028366_26035390_26036038_26036653_26037163_26037471_26037557_26037869_26037934_26038347
ENSMUSG00000025738.9_6	chr17	+	2864	5	FSM	ENSMUSG00000025738.9	ENSMUST00000236165.2	2757	5	421	-528	421	0	multi-exon	FALSE	canonical	3	16	junction_4	2.9474565306379	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACAAGTGGGTTATT	NA	False	NA	-3	True	ATTAAA	-9	NA	26035713	26040229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26036038_26036653_26037163_26037471_26037557_26037869_26037934_26038347
ENSMUSG00000025738.9_7	chr17	+	895	1	ISM	ENSMUSG00000025738.9	ENSMUST00000045692.9	3489	6	11276	0	2302	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACAAGTGGGTTATT	NA	False	NA	-3	True	ATTAAA	-9	NA	26039334	26040229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_26039300_26040200
ENSMUSG00000025739.14_0	chr17	+	357	3	FSM	ENSMUSG00000025739.14	ENSMUST00000172002.8	719	3	39	323	39	-4	multi-exon	FALSE	canonical	2	6	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTGCTTTAGTCCAT	NA	False	NA	12	True	TATAAA	-14	NA	25936183	25938057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25936252_25937640_25937773_25937900
ENSMUSG00000025742.6_0	chrX	-	3649	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	44	6	5	-6	multi-exon	FALSE	canonical	3	187	junction_5	11.6535640709422	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATAGTTCTTGTCATC	NA	False	NA	-9	True	AATAAA	-18	NA	166165701	166129323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
ENSMUSG00000025742.6_1	chrX	-	1993	1	ISM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	34430	5	34391	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATAGTTCTTGTCATCC	NA	False	NA	-8	True	AATAAA	-19	NA	166131315	166129322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_166129300_166131300
ENSMUSG00000025742.6_4	chrX	-	3647	7	NNC	ENSMUSG00000025742.6	novel	3699	7	NA	NA	17	-5	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_5	70.4258869703148	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATAGTTCTTGTCATCC	NA	False	NA	-8	True	AATAAA	-19	NA	166165689	166129322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156989_166157183_166165465
ENSMUSG00000025743.15_0	chr4	+	4930	5	FSM	ENSMUSG00000025743.15	ENSMUST00000070478.4	4973	5	35	8	35	-8	multi-exon	FALSE	canonical	3	49	junction_4	11.1018016555873	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGTCGTGTGGTGGCC	NA	False	NA	2	True	AATAAA	-10	NA	130519882	130553622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_130520114_130544155_130544274_130545892_130546516_130548678_130548968_130549953
ENSMUSG00000025743.15_5	chr4	+	4322	3	ISM	ENSMUSG00000025743.15	ENSMUST00000070478.4	4973	5	26304	8	1996	-8	3prime_fragment	FALSE	canonical	3	49	junction_2	15.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGTCGTGTGGTGGCC	NA	False	NA	2	True	AATAAA	-10	NA	130546151	130553622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_130546516_130548678_130548968_130549953
ENSMUSG00000025743.15_6	chr4	+	2055	1	ISM	ENSMUSG00000025743.15	ENSMUST00000070478.4	4973	5	31720	8	7412	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGTCGTGTGGTGGCC	NA	False	NA	2	True	AATAAA	-10	NA	130551567	130553622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_130551600_130553600
ENSMUSG00000025745.13_0	chr5	-	2709	20	FSM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	182	1126	-4	-4	multi-exon	FALSE	canonical	3	340	junction_11	40.0253382350609	707	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGGCCTGTTTTC	NA	False	NA	-7	True	AATAAA	-19	NA	30359978	30324427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
ENSMUSG00000025747.13_5	chr5	-	986	7	FSM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	6	2171	3	66	multi-exon	FALSE	canonical	3	1628	junction_1	98.4757443344412	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGCTTTCAGTGATGCT	NA	False	NA	-23	True	ATTAAA	-17	NA	30278609	30265995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
ENSMUSG00000025747.13_7	chr5	-	995	7	NIC	ENSMUSG00000025747.13	novel	3884	8	NA	NA	4	66	combination_of_known_junctions	FALSE	canonical	3	80	junction_2	658.000105538661	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGCTTTCAGTGATGCT	NA	False	NA	-23	True	ATTAAA	-17	NA	30278608	30265995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_30266132_30266965_30267048_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
ENSMUSG00000025757.14_1	chr3	+	3772	19	FSM	ENSMUSG00000025757.14	ENSMUST00000204702.3	9479	19	38	5669	-16	850	multi-exon	FALSE	canonical	3	15	junction_16	4.58930587290297	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCCTTTTGAAAACTT	NA	False	NA	1	True	ATTAAA	-18	NA	40699899	40744869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_40700217_40705106_40705165_40707581_40707723_40711432_40711556_40714795_40714896_40715213_40715348_40721243_40721489_40721634_40721712_40722401_40722554_40723183_40723291_40724942_40725077_40726978_40727176_40733766_40733866_40735991_40736130_40738660_40738787_40739051_40739160_40739710_40739831_40741155_40741318_40743635
ENSMUSG00000025757.14_2	chr3	+	4160	1	ISM	ENSMUSG00000025757.14	ENSMUST00000204702.3	9479	19	46510	7	7930	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAACCATGAGTTTTGC	787	False	NA	2	True	AATAAA	-18	NA	40746371	40750531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_40746400_40750500
ENSMUSG00000025758.11_1	chr3	+	3452	16	FSM	ENSMUSG00000025758.11	ENSMUST00000026858.11	3479	16	23	4	0	-3	multi-exon	FALSE	canonical	3	256	junction_10	36.6472675955824	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACTTGGTTTATTGGCTA	7808	False	NA	23	True	AATAAA	-19	NA	40754476	40771314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442_40760356_40760921_40761023_40763181_40763544_40764711_40764817_40765096_40765200_40765668_40765819_40766314_40766449_40766528_40766621_40767165_40767311_40767900_40768027_40769416_40769524_40770749
ENSMUSG00000025758.11_35	chr3	+	2502	12	ISM	ENSMUSG00000025758.11	ENSMUST00000026858.11	3479	16	5364	30	3920	-29	3prime_fragment	FALSE	canonical	3	256	junction_6	41.6008184916301	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAACACAGTGGTAAG	NA	False	NA	-3	True	AATACA	-7	NA	40759817	40771288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_40760356_40760921_40761023_40763181_40763544_40764711_40764817_40765096_40765200_40765668_40765819_40766314_40766449_40766528_40766621_40767165_40767311_40767900_40768027_40769416_40769524_40770749
ENSMUSG00000025758.11_41	chr3	+	176	1	ISM	ENSMUSG00000025758.11	ENSMUST00000204594.3	3403	6	8210	0	-4500	0	mono-exon	FALSE	NA	NA	NA	NA	NA	273	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	40762672	40762848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_40762700_40762800
ENSMUSG00000025758.11_8	chr3	+	3448	16	FSM	ENSMUSG00000025758.11	ENSMUST00000203895.3	3320	16	1	-129	1	-2	multi-exon	FALSE	canonical	3	18	junction_4	89.82788480694	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTGGTTTATTGGCTAA	7809	False	NA	24	True	AATAAA	-20	NA	40754477	40771315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759446_40760356_40760921_40761023_40763181_40763544_40764711_40764817_40765096_40765200_40765668_40765819_40766314_40766449_40766528_40766621_40767165_40767311_40767900_40768027_40769416_40769524_40770749
ENSMUSG00000025759.12_1	chr3	-	2970	12	FSM	ENSMUSG00000025759.12	ENSMUST00000026859.11	3151	12	145	36	-46	-36	multi-exon	FALSE	canonical	3	17	junction_5	6.38308715692435	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCAAGACTGTAAGAATC	NA	False	NA	-20	True	NA	NA	NA	40801175	40772573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_40774156_40776297_40776546_40776629_40776734_40778261_40778397_40781308_40781418_40785058_40785115_40786447_40786593_40788378_40788493_40789603_40789845_40791523_40791568_40793848_40793941_40801075
ENSMUSG00000025759.12_2	chr3	-	2842	12	NIC	ENSMUSG00000025759.12	novel	3151	12	NA	NA	-11	-25	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	8.60616730621008	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAATCTGTCATATTTC	NA	False	NA	-9	True	AATAAA	-9	NA	40801140	40772562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_40774156_40776297_40776546_40776629_40776734_40778261_40778397_40781308_40781418_40785058_40785115_40786447_40786593_40788378_40788493_40789603_40789741_40791523_40791568_40793848_40793941_40801075
ENSMUSG00000025762.17_0	chr3	+	2506	10	FSM	ENSMUSG00000025762.17	ENSMUST00000048490.13	2497	10	2	-11	2	0	multi-exon	FALSE	canonical	3	71	junction_4	8.10273540155757	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGTTTTTAAGGGCTT	NA	False	NA	13	True	AATAAA	-26	NA	40904264	40932228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_40905120_40916042_40916102_40916603_40916664_40918402_40918578_40921799_40921941_40924325_40924470_40924885_40925052_40926795_40926941_40930935_40931111_40931642
ENSMUSG00000025762.17_3	chr3	+	2446	9	NIC	ENSMUSG00000025762.17	novel	1705	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	22.2920950114609	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGTTTTTAAGGGCTT	NA	False	NA	13	True	AATAAA	-26	NA	40904264	40932228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_40905120_40916042_40916102_40918402_40918578_40921799_40921941_40924325_40924470_40924885_40925052_40926795_40926941_40930935_40931111_40931642
ENSMUSG00000025764.15_0	chr3	+	5467	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	2	12	2	-6	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	1733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACATTTTAAGTGTCTGT	NA	False	NA	7	True	AATAAA	-16	NA	41510167	41571287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
ENSMUSG00000025764.15_2	chr3	+	3399	9	ISM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	2	10093	2	76	5prime_fragment	FALSE	canonical	3	683	junction_7	60.6727904418447	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGTCGTCATTTTGCG	NA	False	NA	8	True	ATTAAA	-13	NA	41510167	41561206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904
ENSMUSG00000025764.15_67	chr3	+	4150	3	ISM	ENSMUSG00000025764.15	ENSMUST00000168086.7	4790	11	39836	-740	2260	-6	3prime_fragment	FALSE	canonical	3	776	junction_1	7.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACATTTTAAGTGTCTGT	3390	False	NA	7	True	AATAAA	-16	NA	41559124	41571287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_41559427_41564237_41564356_41567557
ENSMUSG00000025764.15_70	chr3	+	2804	1	ISM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	58318	12	11619	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACATTTTAAGTGTCTGT	3481	False	NA	7	True	AATAAA	-16	NA	41568483	41571287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_41568500_41571300
ENSMUSG00000025766.15_2	chr3	+	3539	7	FSM	ENSMUSG00000025766.15	ENSMUST00000146165.8	3574	7	26	9	-10	0	multi-exon	TRUE	canonical	3	22	junction_1	8.72576007513895	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCTCATATTTTGTGC	NA	False	NA	3	True	ATTAAA	-13	NA	41697078	41713365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_41697125_41699130_41699248_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
ENSMUSG00000025766.15_3	chr3	+	3411	6	FSM	ENSMUSG00000025766.15	ENSMUST00000108065.9	3452	6	41	0	1	0	multi-exon	FALSE	canonical	3	14	junction_1	11.0199818511647	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCTCATATTTTGTGC	NA	False	NA	3	True	ATTAAA	-13	NA	41697089	41713365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_41697125_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
ENSMUSG00000025766.15_5	chr3	+	2512	1	ISM	ENSMUSG00000025766.15	ENSMUST00000143841.8	4129	8	13806	455	5227	4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCATATTTTGTGCTGTG	NA	False	NA	7	True	ATTAAA	-17	NA	41710857	41713369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_41710900_41713400
ENSMUSG00000025776.14_0	chr1	+	3221	15	FSM	ENSMUSG00000025776.14	ENSMUST00000095075.5	4472	15	317	934	317	-165	multi-exon	FALSE	canonical	0	0	junction_10	1.24539969815448	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAGAAATGAAGTA	NA	False	NA	NA	False	NA	NA	NA	17797628	17835634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_17797988_17798817_17799139_17815577_17815697_17816003_17816137_17816954_17817071_17817724_17817826_17819730_17819872_17820488_17820550_17820657_17820725_17820957_17821089_17823061_17823106_17823191_17823265_17826481_17826558_17832335_17832467_17834286
ENSMUSG00000025779.11_0	chr1	+	610	5	FSM	ENSMUSG00000025779.11	ENSMUST00000026881.11	632	5	12	10	12	-10	multi-exon	FALSE	canonical	2	6	junction_2	0.707106781186548	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAAAAAACTGTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	16758668	16779825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_16758844_16761907_16761998_16771018_16771148_16776396_16776450_16779662
ENSMUSG00000025781.15_0	chr2	-	1085	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	75	6	-8	-6	multi-exon	TRUE	canonical	3	3857	junction_2	289.314942238504	2170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATCAGTCTCATTATT	9579	False	NA	-8	True	AATAAA	-13	NA	10085246	10060846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUSG00000025782.13_0	chr2	-	4056	7	FSM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	-4	740	-4	-1	multi-exon	FALSE	canonical	3	96	junction_4	19.5078331845327	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCATTTGTGTTTATATTG	NA	False	NA	NA	False	AGTAAA	-17	NA	10053411	9920102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_9921278_9922913_9923021_9925862_9926113_9945737_9945821_9955924_9957757_10047237_10047481_10053045
ENSMUSG00000025782.13_1	chr2	-	2758	5	FSM	ENSMUSG00000025782.13	ENSMUST00000114909.2	4897	5	1744	395	1744	342	multi-exon	FALSE	canonical	3	96	junction_4	22.410934831015	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATACAAATATATGAATAGA	NA	False	NA	NA	False	NA	NA	NA	9956724	9919759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_9921278_9922913_9923021_9925862_9926113_9945737_9945821_9955924
ENSMUSG00000025785.6_0	chr9	+	1016	8	FSM	ENSMUSG00000025785.6	ENSMUST00000026891.5	1053	8	31	6	-1	-4	multi-exon	FALSE	canonical	3	1140	junction_3	103.377058995362	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCATTGGTGTTGTTAGC	NA	False	NA	9	True	AATAAA	-14	NA	122942310	122965188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_122942388_122947955_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
ENSMUSG00000025785.6_1	chr9	+	1010	8	NIC	ENSMUSG00000025785.6	novel	1053	8	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	451.937642438712	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCATTGGTGTTGTTAGC	NA	False	NA	9	True	AATAAA	-14	NA	122942312	122965188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_122942388_122947959_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
ENSMUSG00000025786.18_0	chr9	-	4768	7	FSM	ENSMUSG00000025786.18	ENSMUST00000238520.2	5376	7	-40	648	-7	-648	multi-exon	FALSE	canonical	3	33	junction_1	93.3196418529109	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAATTTCTGGGGTCCAG	8731	False	NA	NA	False	AATAAA	-7	NA	122942252	122895872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_122899684_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929327_122929658_122942060
ENSMUSG00000025786.18_10	chr9	-	2435	7	FSM	ENSMUSG00000025786.18	ENSMUST00000147563.9	6987	7	28	4524	1	-2	multi-exon	FALSE	canonical	3	232	junction_1	22.8454955443445	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTGCTCTGCTCTCTC	8741	False	NA	-3	True	AATAAA	-14	NA	122942242	122905898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929327_122929658_122942060
ENSMUSG00000025786.18_11	chr9	-	3471	1	ISM	ENSMUSG00000025786.18	ENSMUST00000147563.9	6987	7	35581	1844	22725	-1844	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCAGAGTACTTTGGTTG	NA	False	NA	-11	True	AATACA	-16	NA	122906689	122903218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_122903200_122906700
ENSMUSG00000025786.18_14	chr9	-	2487	8	FSM	ENSMUSG00000025786.18	ENSMUST00000026892.15	2492	8	5	0	3	0	multi-exon	FALSE	canonical	3	31	junction_6	109.785505158273	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCTCTGCTCTCTCCC	8743	False	NA	-1	True	AATAAA	-16	NA	122942240	122905896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122927987_122928040_122929327_122929658_122942060
ENSMUSG00000025786.18_21	chr9	-	2435	7	NIC	ENSMUSG00000025786.18	novel	6987	7	NA	NA	3	-4	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	97.6774738048077	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTTCTGCTCTGCTCTC	8743	False	NA	-5	True	AATAAA	-12	NA	122942240	122905900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929323_122929658_122942060
ENSMUSG00000025786.18_7	chr9	-	3156	1	ISM	ENSMUSG00000025786.18	ENSMUST00000140497.8	5380	7	43186	646	30388	-646	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTCTGGGGTCCAGCT	4106	False	NA	NA	False	AATAAA	-9	NA	122899026	122895870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_122895900_122899000
ENSMUSG00000025789.10_1	chr7	-	5364	6	FSM	ENSMUSG00000025789.10	ENSMUST00000026896.10	5368	6	-7	11	-7	-11	multi-exon	FALSE	canonical	2	7	junction_2	2.31516738055805	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGATTAAATCTTGGGTG	NA	False	NA	NA	False	NA	NA	NA	73663429	73588877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_73593213_73610439_73610734_73616488_73616747_73621665_73621795_73626405_73626469_73663144
ENSMUSG00000025789.10_2	chr7	-	2840	1	ISM	ENSMUSG00000025789.10	ENSMUST00000026896.10	5368	6	71711	5	71711	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATCTTGGGTGTCTATA	5634	False	NA	NA	False	NA	NA	NA	73591711	73588871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_73588900_73591700
ENSMUSG00000025790.15_0	chr7	-	2865	11	FSM	ENSMUSG00000025790.15	ENSMUST00000098371.9	2709	11	-156	0	-9	0	multi-exon	FALSE	canonical	0	0	junction_1	1.86815416922694	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGTCTCATGTTGTCAT	NA	False	NA	NA	False	ATTAAA	-19	NA	74204537	73925166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_73925837_73934174_73934418_73946968_73947034_73952869_73953046_73968206_73968346_73970232_73970432_73977607_73977773_73996395_73996660_74009568_74009668_74153924_74154391_74204158
ENSMUSG00000025790.15_1	chr7	-	4621	10	FSM	ENSMUSG00000025790.15	ENSMUST00000026897.14	4589	10	-152	120	14	-120	multi-exon	FALSE	canonical	0	0	junction_7	1.82574185835055	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTTTGTATCTTGGAT	NA	False	NA	NA	False	NA	NA	NA	74204514	73931725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_73934418_73946968_73947034_73952869_73953046_73968206_73968346_73970232_73970432_73977607_73977773_73996395_73996660_74009568_74009668_74153924_74154391_74204158
ENSMUSG00000025791.19_0	chr4	+	2310	11	FSM	ENSMUSG00000025791.19	ENSMUST00000058351.16	2371	11	56	5	56	-5	multi-exon	TRUE	canonical	3	174	junction_5	14.102836594104	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTTGCCTGTTGTCGCTTT	NA	False	NA	11	True	ATTAAA	-14	NA	99786666	99844486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_99787009_99818652_99818816_99819240_99819388_99820714_99820841_99821871_99822063_99824255_99824411_99827183_99827300_99836061_99836198_99839080_99839265_99841165_99841301_99843871
ENSMUSG00000025792.10_0	chr11	+	1964	11	FSM	ENSMUSG00000025792.10	ENSMUST00000026899.4	2023	11	57	2	9	-2	multi-exon	FALSE	canonical	3	77	junction_8	8.74356906531881	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTTGGGGGCTGGCAGA	NA	False	NA	21	True	AATAAA	-35	NA	120382722	120390011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120387933_120388209_120388288_120388745_120388803_120388896
ENSMUSG00000025793.18_0	chr11	+	2858	22	FSM	ENSMUSG00000025793.18	ENSMUST00000106205.9	2900	22	38	4	38	-4	multi-exon	FALSE	canonical	3	286	junction_14	47.8204313112466	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCTCATGATTGATTG	8220	False	NA	9	True	AATAAA	-10	NA	120358498	120374801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
ENSMUSG00000025793.18_1	chr11	+	3144	21	ISM	ENSMUSG00000025793.18	ENSMUST00000106205.9	2900	22	39	4	39	-4	intron_retention	FALSE	canonical	3	286	junction_14	46.7074940453885	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCTCATGATTGATTG	8221	False	NA	9	True	AATAAA	-10	NA	120358499	120374801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840
ENSMUSG00000025793.18_3	chr11	+	2861	22	FSM	ENSMUSG00000025793.18	ENSMUST00000106203.9	2903	22	38	4	38	-4	multi-exon	FALSE	canonical	3	105	junction_14	76.3896503775692	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCTCATGATTGATTG	8220	False	NA	9	True	AATAAA	-10	NA	120358498	120374801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369912_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
ENSMUSG00000025794.10_0	chr9	+	716	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	71	222	1	0	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	4018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCATGTGTGGACTCT	NA	False	NA	16	True	AATAAA	-20	NA	120400580	120403498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
ENSMUSG00000025794.10_6	chr9	+	688	5	FSM	ENSMUSG00000025794.10	ENSMUST00000213310.2	1271	5	582	1	1	-1	multi-exon	FALSE	canonical	3	14823	junction_3	1143.83114466253	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCTCATGTGTGGACTC	NA	False	NA	15	True	AATAAA	-19	NA	120401161	120403497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
ENSMUSG00000025795.9_0	chr10	-	3483	5	FSM	ENSMUSG00000025795.9	ENSMUST00000026902.9	3522	5	34	5	34	-5	multi-exon	FALSE	canonical	3	44	junction_2	3.60555127546399	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTTGTATGTCTTTAT	NA	False	NA	NA	False	ATTAAA	-19	NA	121312218	121246259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_121248991_121250262_121250373_121251970_121252194_121252989_121253098_121311907
ENSMUSG00000025795.9_3	chr10	-	1555	1	ISM	ENSMUSG00000025795.9	ENSMUST00000026902.9	3522	5	64438	5	50304	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTTGTATGTCTTTAT	NA	False	NA	NA	False	ATTAAA	-19	NA	121247814	121246259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_121246300_121247800
ENSMUSG00000025809.16_0	chr8	+	3701	16	FSM	ENSMUSG00000025809.16	ENSMUST00000090006.12	3815	16	104	10	1	-10	multi-exon	TRUE	canonical	3	487	junction_6	37.7685348169905	1303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTAAGTGATTTGTTTTG	NA	False	NA	6	True	AATAAA	-12	NA	129412238	129459671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_129412441_129431893_129431961_129433554_129433641_129436733_129436957_129439688_129439860_129440407_129440647_129442602_129442759_129443687_129443784_129444065_129444156_129446472_129446614_129446755_129446956_129448864_129449104_129449290_129449514_129450676_129450910_129452500_129452668_129458503
ENSMUSG00000025812.19_0	chr8	+	4678	16	FSM	ENSMUSG00000025812.19	ENSMUST00000162907.8	4682	16	0	4	0	-4	multi-exon	FALSE	canonical	3	39	junction_15	26.9315180906437	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATCACTTTGTATGTA	NA	False	NA	NA	False	AATAAA	-9	NA	127790819	128129054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128126878
ENSMUSG00000025812.19_1	chr8	+	5941	25	FSM	ENSMUSG00000025812.19	ENSMUST00000160272.8	5815	25	-128	2	35	-2	multi-exon	FALSE	canonical	3	28	junction_17	33.9451917311814	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGCTGTGTCTCTAGTT	NA	False	NA	11	True	AATAAA	-19	NA	127790677	128338765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
ENSMUSG00000025812.19_13	chr8	+	5849	25	NIC	ENSMUSG00000025812.19	novel	5815	25	NA	NA	-27	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_15	35.7828132239798	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGCTGTGTCTCTAGTT	NA	False	NA	11	True	AATAAA	-19	NA	127790778	128338765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125241_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
ENSMUSG00000025812.19_42	chr8	+	4185	14	FSM	ENSMUSG00000025812.19	ENSMUST00000160717.8	4214	14	25	4	-2	-4	multi-exon	FALSE	canonical	3	35	junction_1	34.055645380003	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATCACTTTGTATGTA	NA	False	NA	NA	False	AATAAA	-9	NA	128026090	128129054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_128026285_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128126878
ENSMUSG00000025812.19_75	chr8	+	2203	4	FSM	ENSMUSG00000025812.19	ENSMUST00000159940.2	746	4	-21	-1436	-21	-2	multi-exon	FALSE	canonical	3	17	junction_1	28.2410261066335	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGCTGTGTCTCTAGTT	NA	False	NA	11	True	AATAAA	-19	NA	128306183	128338765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_128306285_128319541_128319663_128329539_128329668_128336912
ENSMUSG00000025812.19_8	chr8	+	5799	24	FSM	ENSMUSG00000025812.19	ENSMUST00000026921.13	4050	24	-269	-1480	-30	-1	multi-exon	FALSE	canonical	3	7	junction_17	35.6545068165681	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCTGTGTCTCTAGTTT	NA	False	NA	12	True	AATAAA	-20	NA	127790775	128338766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136189_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
ENSMUSG00000025812.19_9	chr8	+	4759	16	NIC	ENSMUSG00000025812.19	novel	4682	16	NA	NA	-58	-4	combination_of_known_junctions	FALSE	canonical	3	20	junction_15	30.4321467457614	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATCACTTTGTATGTA	NA	False	NA	NA	False	AATAAA	-9	NA	127790747	128129054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125241_128126878
ENSMUSG00000025813.15_0	chr7	-	4380	1	ISM	ENSMUSG00000025813.15	ENSMUST00000098326.3	10982	9	85214	2891	11154	-2891	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	81257499	81253119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_81253100_81257500
ENSMUSG00000025813.15_1	chr7	-	2114	9	FSM	ENSMUSG00000025813.15	ENSMUST00000026922.15	1736	9	8	-386	8	386	multi-exon	FALSE	canonical	3	28	junction_5	3.99804639792987	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACATATAAGCAGAACTTA	NA	False	NA	NA	False	NA	NA	NA	81356684	81259091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_81260190_81261053_81261135_81262008_81262120_81264090_81264248_81268323_81268431_81273999_81274093_81286108_81286241_81299301_81299459_81356506
ENSMUSG00000025813.15_2	chr7	-	2148	9	FSM	ENSMUSG00000025813.15	ENSMUST00000207983.2	1634	9	-128	-386	7	386	multi-exon	FALSE	canonical	3	22	junction_5	5.73230974389905	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACATATAAGCAGAACTTA	NA	False	NA	NA	False	NA	NA	NA	81356685	81259091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_81260190_81261053_81261135_81262008_81262120_81264090_81264248_81268323_81268464_81273999_81274093_81286108_81286241_81299301_81299459_81356506
ENSMUSG00000025813.15_4	chr7	-	1354	4	ISM	ENSMUSG00000025813.15	ENSMUST00000098326.3	10982	9	78563	8859	4503	390	3prime_fragment	FALSE	canonical	3	34	junction_1	3.09120616516523	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAGCAGAACTTAGTGT	NA	False	NA	NA	False	NA	NA	NA	81264150	81259087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_81260190_81261053_81261135_81262008_81262120_81264090
ENSMUSG00000025813.15_7	chr7	-	1251	3	ISM	ENSMUSG00000025813.15	ENSMUST00000098326.3	10982	9	80633	8863	6573	386	3prime_fragment	FALSE	canonical	3	34	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACATATAAGCAGAACTTA	NA	False	NA	NA	False	NA	NA	NA	81262080	81259091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_81260190_81261053_81261135_81262008
ENSMUSG00000025815.14_11	chr2	-	3831	17	FSM	ENSMUSG00000025815.14	ENSMUST00000095147.9	5480	17	26	1623	-23	-560	multi-exon	FALSE	canonical	3	33	junction_14	8.78119439484174	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTAAGGTGGACTT	NA	False	NA	NA	False	AATAAA	-20	NA	5947577	5902548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_5903624_5904721_5904808_5907139_5907310_5907778_5907862_5908770_5908936_5915112_5915220_5916624_5916776_5918322_5918463_5919620_5919706_5922483_5922797_5924250_5924450_5926475_5926648_5928679_5928950_5934448_5934644_5935585_5935798_5937197_5937354_5947325
ENSMUSG00000025815.14_18	chr2	-	1046	1	Genic_Genomic	ENSMUSG00000025815.14	novel	NA	NA	NA	NA	14697	21	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAACCATTTTACTCAAA	NA	False	NA	-17	True	AATAAA	-14	NA	5901950	5900904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_5900900_5902000
ENSMUSG00000025816.16_1	chr2	-	2346	12	FSM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	63	39	-35	3	multi-exon	FALSE	canonical	3	221	junction_3	37.3630833845388	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGTTGCAGTTGTGAT	NA	False	NA	-56	True	AATAAA	-12	NA	5900180	5875836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
ENSMUSG00000025816.16_33	chr2	-	1339	6	ISM	ENSMUSG00000025816.16	ENSMUST00000026926.5	756	8	-55	3960	-40	-7	5prime_fragment	FALSE	canonical	3	245	junction_1	28.7193314685422	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5900185	5886625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
ENSMUSG00000025816.16_4	chr2	-	1994	2	ISM	ENSMUSG00000025816.16	ENSMUST00000124859.2	676	3	98	-1009	98	3	intron_retention	FALSE	canonical	3	339	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTTCTCTAAGAGTATT	NA	False	NA	-14	True	AATAAA	-13	NA	5879509	5875794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_5876833_5878553
ENSMUSG00000025816.16_7	chr2	-	2161	11	NIC	ENSMUSG00000025816.16	novel	2448	12	NA	NA	-3	0	combination_of_known_junctions	TRUE	canonical	3	23	junction_2	84.6070919013294	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTGTTCTCTAAGAGT	NA	False	NA	-17	True	AATAAA	-10	NA	5900148	5875797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_5876833_5878553_5878631_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
ENSMUSG00000025817.13_0	chr2	+	1367	9	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	239.550490502524	331	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAAAAGAAGACTTGGGG	1938	False	NA	NA	False	NA	NA	NA	5850065	5873543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ENSMUSG00000025817.13_11	chr2	+	1353	9	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	13	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	239.550490502524	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAAAAGAAGACTTGGGG	1949	False	NA	NA	False	NA	NA	NA	5850076	5873543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869268_5871164_5871219_5872899
ENSMUSG00000025817.13_2	chr2	+	1437	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	320.9755192388	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAAAAGAAGACTTGGGG	1938	False	NA	NA	False	NA	NA	NA	5850065	5873543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ENSMUSG00000025817.13_43	chr2	+	177	1	ISM	ENSMUSG00000025817.13	ENSMUST00000138549.8	1677	3	11117	874	8235	-874	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACCATT	8329	False	NA	NA	False	NA	NA	NA	5861180	5861357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_5861200_5861400
ENSMUSG00000025817.13_49	chr2	+	1250	1	ISM	ENSMUSG00000025817.13	ENSMUST00000026927.10	4764	10	24548	1079	21432	-1079	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTGGGTGGTGTCAAAT	NA	False	NA	4	True	AATAAA	-11	NA	5874377	5875627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_5874400_5875600
ENSMUSG00000025817.13_9	chr2	+	1345	9	NIC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	15	-2	combination_of_known_splicesites	FALSE	canonical	3	49	junction_7	223.812107302085	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAGAAGACTTGGGGGT	1951	False	NA	NA	False	NA	NA	NA	5850078	5873545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871164_5871219_5872899
ENSMUSG00000025821.10_0	chr6	+	3611	8	FSM	ENSMUSG00000025821.10	ENSMUST00000061890.8	5573	8	445	1517	-7	-1517	multi-exon	TRUE	canonical	3	24	junction_5	6.34388666033558	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGCATGTTCCCAAAGC	NA	False	NA	16	True	AATAAA	-16	NA	47854582	47883902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_47854771_47856933_47857354_47866999_47867127_47867537_47867658_47869788_47869909_47874748_47874863_47875827_47875942_47881494
ENSMUSG00000025821.10_3	chr6	+	3164	7	ISM	ENSMUSG00000025821.10	ENSMUST00000061890.8	5573	8	3055	1517	2603	-1517	3prime_fragment	FALSE	canonical	3	24	junction_4	6.81705377873919	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGCATGTTCCCAAAGC	NA	False	NA	16	True	AATAAA	-16	NA	47857192	47883902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_47857354_47866999_47867127_47867537_47867658_47869788_47869909_47874748_47874863_47875827_47875942_47881494
ENSMUSG00000025821.10_4	chr6	+	1703	1	ISM	ENSMUSG00000025821.10	ENSMUST00000061890.8	5573	8	28062	1517	27610	-1517	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGCATGTTCCCAAAGC	4524	False	NA	16	True	AATAAA	-16	NA	47882199	47883902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_47882200_47883900
ENSMUSG00000025823.10_0	chr6	-	2330	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	63	6	-3	-6	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	2653	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCATGTTGTTTGCCTTT	8953	False	NA	17	True	TTTAAA	-18	NA	47790301	47773080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
ENSMUSG00000025825.13_0	chr5	+	885	5	FSM	ENSMUSG00000025825.13	ENSMUST00000026937.12	957	5	54	18	-1	-3	multi-exon	FALSE	canonical	3	687	junction_1	28.9179874818425	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTTTCTGTACTGAACC	3649	False	NA	NA	False	AATAAA	-12	NA	113910862	113916331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831_113914911_113915893
ENSMUSG00000025825.13_2	chr5	+	1013	5	FSM	ENSMUSG00000025825.13	ENSMUST00000134881.2	489	5	-200	-324	7	-4	multi-exon	FALSE	canonical	3	53	junction_1	300.515390620847	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTTTTCTGTACTGAAC	3672	False	NA	NA	False	AATAAA	-11	NA	113910885	113916330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_113911158_113912323_113912438_113913278_113913390_113914831_113914911_113915893
ENSMUSG00000025825.13_23	chr5	+	167	1	ISM	ENSMUSG00000025825.13	ENSMUST00000112311.8	1395	4	4612	217	3568	-217	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATCTTATTAAAAA	8262	False	NA	NA	False	NA	NA	NA	113915475	113915642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_113915500_113915600
ENSMUSG00000025825.13_4	chr5	+	1397	4	FSM	ENSMUSG00000025825.13	ENSMUST00000112311.8	1395	4	-4	2	-4	-2	multi-exon	FALSE	canonical	3	687	junction_1	22.86676384819	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTGAAGCTGTCTACC	3646	False	NA	NA	False	AATAAA	-19	NA	113910859	113915857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831
ENSMUSG00000025838.13_0	chr2	+	1670	4	NIC	ENSMUSG00000025838.13	novel	1540	3	NA	NA	-32	-1	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	1.63299316185545	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATACCAGTGCATCTCCAT	NA	False	NA	NA	False	NA	NA	NA	87336876	87341215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_87336974_87338774_87339089_87339524_87340113_87340544
ENSMUSG00000025838.13_1	chr2	+	1708	5	NIC	ENSMUSG00000025838.13	novel	644	4	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	2.06155281280883	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATACCAGTGCATCTCCAT	NA	False	NA	NA	False	NA	NA	NA	87336902	87341215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_87336974_87337417_87337482_87338774_87339089_87339524_87340113_87340544
ENSMUSG00000025839.4_0	chr2	-	1570	2	ISM	ENSMUSG00000025839.4	ENSMUST00000026957.4	1861	3	1022	-2	1022	2	3prime_fragment	FALSE	canonical	3	30	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATTTATTTATTTATTT	NA	False	NA	-5	True	AATAAA	-18	NA	87321740	87319428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_87320426_87321167
ENSMUSG00000025839.4_1	chr2	-	1951	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-13	-2	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	7.40870359029762	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATTTATTTATTTATTT	NA	False	NA	-9	True	AATAAA	-14	NA	87327256	87319432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_87320426_87321167_87321750_87322478_87322789_87327190
ENSMUSG00000025839.4_2	chr2	-	1869	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	15	1	combination_of_known_junctions	FALSE	canonical	3	5	junction_3	11.1455023315337	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTATTTATTTATT	NA	False	NA	-6	True	AATAAA	-17	NA	87327422	87319429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_87320426_87321167_87321750_87322478_87322538_87327190
ENSMUSG00000025839.4_3	chr2	-	1832	3	FSM	ENSMUSG00000025839.4	ENSMUST00000026957.4	1861	3	31	-2	31	2	multi-exon	FALSE	canonical	3	27	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATTTATTTATTTATTT	NA	False	NA	-5	True	AATAAA	-18	NA	87322731	87319428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_87320426_87321167_87321750_87322478
ENSMUSG00000025839.4_6	chr2	-	1263	2	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-23	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATTTATTTATTTATTT	NA	False	NA	-9	True	AATAAA	-14	NA	87327460	87319432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_87320426_87327190
ENSMUSG00000025854.16_0	chr5	+	3062	10	FSM	ENSMUSG00000025854.16	ENSMUST00000026972.8	3582	10	506	14	-63	-14	multi-exon	TRUE	canonical	2	6	junction_4	3.46410161513775	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGGCTCTCTGAGGTG	NA	False	NA	3	True	AATAAA	-16	NA	138740774	138795818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138741981_138743555_138743735_138752383_138752463_138778941_138779035_138780748_138780865_138791961_138792143_138793005_138793116_138793228_138793311_138793790_138793851_138794862
ENSMUSG00000025855.14_0	chr5	-	2564	11	FSM	ENSMUSG00000025855.14	ENSMUST00000026973.14	2637	11	71	2	71	0	multi-exon	FALSE	canonical	1	2	junction_7	3.06757233003559	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGGAGCCTCTGTCTA	NA	False	NA	-4	True	ATTAAA	-24	NA	139115443	139003062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139004587_139005810_139005893_139022788_139022911_139028189_139028251_139036412_139036572_139048308_139048356_139049010_139049073_139092375_139092468_139094238_139094410_139113341_139113541_139115398
ENSMUSG00000025856.16_0	chr5	-	1647	6	FSM	ENSMUSG00000025856.16	ENSMUST00000076095.14	2060	6	38	375	38	127	multi-exon	FALSE	canonical	3	325	junction_5	43.6055042397173	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATTATTTCTGATGCGC	NA	False	NA	-14	True	AATAAA	-17	NA	138980754	138962143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463
ENSMUSG00000025856.16_2	chr5	-	2001	6	NNC	ENSMUSG00000025856.16	novel	2060	6	NA	NA	-324	123	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	152.901275338043	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTATCCATTATTTCTGAT	NA	False	NA	-18	True	AATAAA	-13	NA	138981116	138962147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979046_138979140_138980463
ENSMUSG00000025856.16_3	chr5	-	1864	7	FSM	ENSMUSG00000025856.16	ENSMUST00000110897.8	1287	7	-18	-559	-18	133	multi-exon	FALSE	canonical	3	66	junction_6	122.688969892706	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGATGCGCCTCTGC	NA	False	NA	-8	True	AATAAA	-23	NA	138981860	138962137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463_138980594_138981488
ENSMUSG00000025857.11_0	chr5	+	3431	13	FSM	ENSMUSG00000025857.11	ENSMUST00000026975.11	3450	13	12	7	6	-7	multi-exon	FALSE	canonical	3	278	junction_3	24.0323855569012	752	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTATTTGTGTGGCCATCT	NA	False	NA	4	True	ATTAAA	-12	NA	139135989	139172258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_139136591_139137237_139137423_139138594_139138720_139139112_139139232_139147455_139147689_139148953_139149167_139151814_139151959_139155928_139156098_139159880_139160029_139163669_139163821_139167171_139167329_139170282_139170475_139171264
ENSMUSG00000025858.13_0	chr5	+	1309	9	FSM	ENSMUSG00000025858.13	ENSMUST00000026976.12	2107	9	75	723	29	-1	multi-exon	FALSE	canonical	3	1098	junction_8	59.685503893324	870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTTGTCTCTGCTTCCTT	NA	False	NA	NA	False	AATAAA	-30	NA	139238153	139255083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_139238375_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
ENSMUSG00000025858.13_1	chr5	+	2111	8	NIC	ENSMUSG00000025858.13	novel	2107	9	NA	NA	26	-6	intron_retention	FALSE	canonical	3	1098	junction_7	56.9679465908287	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGACTTTGCAGTAGTCC	NA	False	NA	NA	False	AATAAA	-9	NA	139238150	139255800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_139238375_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139253058_139253157_139253231_139254735
ENSMUSG00000025858.13_2	chr5	+	1307	9	NIC	ENSMUSG00000025858.13	novel	2107	9	NA	NA	27	-2	combination_of_known_junctions	FALSE	canonical	3	131	junction_2	357.02973878236	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTTGTCTCTGCTTCCT	NA	False	NA	NA	False	AATAAA	-29	NA	139238151	139255082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_139238375_139248235_139248315_139248627_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
ENSMUSG00000025860.16_10	chrX	+	6386	8	NIC	ENSMUSG00000025860.16	novel	6542	8	NA	NA	72	3	combination_of_known_junctions	FALSE	canonical	3	15	junction_2	38.1292110421115	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTATCTTCTTTGTATTTG	NA	False	NA	21	True	AATAAA	-17	NA	41156866	41198536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_41156934_41157233_41157360_41183248_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
ENSMUSG00000025860.16_11	chrX	+	5482	7	NIC	ENSMUSG00000025860.16	novel	6542	8	NA	NA	71	-1	combination_of_known_splicesites	FALSE	canonical	3	10	junction_2	42.5535610208541	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTTATCTTCTTTGTA	NA	False	NA	17	True	AATAAA	-13	NA	41156865	41198532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_41156934_41157233_41157360_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
ENSMUSG00000025860.16_13	chrX	+	6320	7	ISM	ENSMUSG00000025860.16	ENSMUST00000115094.8	6542	8	521	1	-41	-1	3prime_fragment	FALSE	canonical	3	60	junction_1	23.6531651628745	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTTATCTTCTTTGTA	NA	False	NA	17	True	AATAAA	-13	NA	41157233	41198532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_41157360_41183243_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
ENSMUSG00000025860.16_14	chrX	+	6498	7	FSM	ENSMUSG00000025860.16	ENSMUST00000115095.9	6670	7	175	-3	163	3	multi-exon	FALSE	canonical	3	22	junction_1	35.08283847632	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTATCTTCTTTGTATTTG	NA	False	NA	21	True	AATAAA	-17	NA	41157449	41198536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_41157750_41183243_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
ENSMUSG00000025860.16_19	chrX	+	5772	6	FSM	ENSMUSG00000025860.16	ENSMUST00000026978.7	6834	6	1064	-2	1064	2	multi-exon	FALSE	canonical	3	86	junction_1	18.4347497948847	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTATCTTCTTTGTATTT	NA	False	NA	20	True	AATAAA	-16	NA	41183668	41198535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
ENSMUSG00000025860.16_23	chrX	+	3309	1	Genic_Genomic	ENSMUSG00000025860.16	novel	NA	NA	NA	NA	12623	3	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTATCTTCTTTGTATTTG	NA	False	NA	21	True	AATAAA	-17	NA	41195227	41198536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_41195200_41198500
ENSMUSG00000025860.16_9	chrX	+	6387	8	FSM	ENSMUSG00000025860.16	ENSMUST00000115094.8	6542	8	154	1	72	-1	multi-exon	FALSE	canonical	3	44	junction_1	28.7345344383332	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTTATCTTCTTTGTA	NA	False	NA	17	True	AATAAA	-13	NA	41156866	41198532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_41156934_41157233_41157360_41183243_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
ENSMUSG00000025862.15_1	chrX	+	6160	34	FSM	ENSMUSG00000025862.15	ENSMUST00000115073.9	6171	34	-16	27	-16	-17	multi-exon	FALSE	canonical	3	50	junction_1	38.2930798352529	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAATAAACCTACCGT	NA	False	NA	-8	True	NA	NA	NA	41238177	41366035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_41238563_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41355242_41355354_41358257_41358385_41360121_41360200_41364139
ENSMUSG00000025862.15_14	chrX	+	5918	34	NIC	ENSMUSG00000025862.15	novel	5825	33	NA	NA	-9	-17	combination_of_known_junctions	FALSE	canonical	3	63	junction_30	34.473955780863	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAATAAACCTACCGT	NA	False	NA	-8	True	NA	NA	NA	41239568	41366035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_41239712_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41355242_41355354_41358257_41358385_41360121_41360200_41364139
ENSMUSG00000025862.15_15	chrX	+	5822	33	FSM	ENSMUSG00000025862.15	ENSMUST00000069619.14	5825	33	-9	12	-9	-2	multi-exon	FALSE	canonical	3	102	junction_1	27.0432957264827	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGTGTGTTGTATGCTTTA	NA	False	NA	7	True	AATAAA	-10	NA	41239568	41366050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_41239712_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41358257_41358385_41360121_41360200_41364139
ENSMUSG00000025862.15_2	chrX	+	5061	33	FSM	ENSMUSG00000025862.15	ENSMUST00000115072.8	5955	33	-110	1004	-15	-1004	multi-exon	FALSE	canonical	3	50	junction_1	32.1178858854377	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGGTGCTGATTTTATA	NA	False	NA	NA	False	AATAAA	-16	NA	41238178	41365048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_41238563_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41358257_41358385_41360121_41360200_41364139
ENSMUSG00000025862.15_72	chrX	+	1084	1	ISM	ENSMUSG00000025862.15	ENSMUST00000115073.9	6171	34	126775	10	123912	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGTTGTATGCTTTATC	NA	False	NA	9	True	AATAAA	-12	NA	41364968	41366052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_41365000_41366100
ENSMUSG00000025868.7_1	chr13	+	613	2	FSM	ENSMUSG00000025868.7	ENSMUST00000026986.7	648	2	25	10	25	-10	multi-exon	FALSE	canonical	3	1416	junction_1	0	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGATGAACTATTTCTTA	6003	False	NA	13	True	AATAAA	-17	NA	54738044	54738961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_54738233_54738536
ENSMUSG00000025869.12_0	chr13	-	1084	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	21	651	-11	-300	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	556	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGACTAGGTGGGTTTT	NA	False	NA	-26	True	GATAAA	-19	NA	54737882	54732648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
ENSMUSG00000025870.11_0	chr13	+	2634	4	FSM	ENSMUSG00000025870.11	ENSMUST00000026988.11	1046	4	47	-1635	15	1635	multi-exon	FALSE	canonical	3	59	junction_3	14.6363322667334	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTGAAGTGACTTTACT	2721	False	NA	8	True	AATAAA	-14	NA	54722874	54730576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_54723091_54723562_54723762_54726605_54726782_54728533
ENSMUSG00000025870.11_1	chr13	+	4243	4	NIC	ENSMUSG00000025870.11	novel	1046	4	NA	NA	-12	1635	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	37.8623236946117	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTGAAGTGACTTTACT	2694	False	NA	8	True	AATAAA	-14	NA	54722847	54730576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_54723091_54723562_54723762_54726605_54726782_54726951
ENSMUSG00000025870.11_5	chr13	+	2192	2	ISM	ENSMUSG00000025870.11	ENSMUST00000026988.11	1046	4	3805	-1635	8	1635	3prime_fragment	FALSE	canonical	3	59	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTGAAGTGACTTTACT	6479	False	NA	8	True	AATAAA	-14	NA	54726632	54730576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_54726782_54728533
ENSMUSG00000025871.19_0	chr13	-	2633	9	FSM	ENSMUSG00000025871.19	ENSMUST00000026989.15	2727	9	87	7	-4	-2	multi-exon	FALSE	canonical	3	520	junction_7	24.8696602308918	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCAGGTCTGTCTTGTC	NA	False	NA	NA	False	AATAAA	-19	NA	54713161	54699037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
ENSMUSG00000025871.19_11	chr13	-	2544	8	FSM	ENSMUSG00000025871.19	ENSMUST00000153065.8	2502	8	-44	2	-3	-2	multi-exon	FALSE	canonical	3	41	junction_6	177.014469603419	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCAGGTCTGTCTTGTC	NA	False	NA	NA	False	AATAAA	-19	NA	54713160	54699037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54712327_54712435_54712994
ENSMUSG00000025871.19_8	chr13	-	2131	5	FSM	ENSMUSG00000025871.19	ENSMUST00000153708.2	946	5	-16	-1169	-5	-4	multi-exon	FALSE	canonical	3	31	junction_4	214.957408572024	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGCCCAGGTCTGTCTTG	NA	False	NA	NA	False	AATAAA	-17	NA	54713162	54699039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54712994
ENSMUSG00000025872.6_0	chr13	-	2306	6	FSM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	25	4	2	-4	multi-exon	FALSE	canonical	3	501	junction_3	36.0699320764539	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGAGGTGTCTAAAGTT	NA	False	NA	-7	True	AATAAA	-11	NA	54616637	54606653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615796_54616353
ENSMUSG00000025872.6_4	chr13	-	1118	1	ISM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	8892	3	8831	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAGGTGTCTAAAGTTA	3763	False	NA	-6	True	AATAAA	-12	NA	54607770	54606652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_54606700_54607800
ENSMUSG00000025873.17_2	chr13	+	4215	11	FSM	ENSMUSG00000025873.17	ENSMUST00000026991.16	1748	11	-11	-2456	9	-21	multi-exon	FALSE	canonical	3	159	junction_3	87.926617130423	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGTTTTATAACAAAAAAATT	NA	False	NA	NA	False	ATTAAA	-1	NA	54769625	54811855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_54769717_54786062_54786132_54789231_54789310_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUSG00000025873.17_3	chr13	+	4280	11	FSM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	27	15	7	-15	multi-exon	TRUE	canonical	0	0	junction_3	132.701770900015	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAACAAAAAAATTATAAAA	NA	False	NA	NA	False	ATTAAA	-7	NA	54769623	54811861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUSG00000025873.17_4	chr13	+	4276	11	NNC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	-10	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	132.701770900015	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAACAAAAAAATTATAAAA	NA	False	NA	NA	False	ATTAAA	-7	NA	54769626	54811861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_54769717_54786062_54786132_54789231_54789366_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUSG00000025873.17_42	chr13	+	2367	1	ISM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	39900	13	10243	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAATTATAAAACC	NA	False	NA	NA	False	ATTAAA	-9	NA	54809496	54811863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_54809500_54811900
ENSMUSG00000025873.17_7	chr13	+	4352	12	NIC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	-10	-15	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	187.610022816365	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAACAAAAAAATTATAAAA	NA	False	NA	NA	False	ATTAAA	-7	NA	54769626	54811861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_54769717_54777202_54777278_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUSG00000025873.17_8	chr13	+	4138	10	NIC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	-10	-15	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	175.481418945317	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAACAAAAAAATTATAAAA	NA	False	NA	NA	False	ATTAAA	-7	NA	54769626	54811861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUSG00000025875.15_1	chr13	+	1495	8	FSM	ENSMUSG00000025875.15	ENSMUST00000026993.14	1585	8	82	8	-4	0	multi-exon	FALSE	canonical	3	352	junction_3	20.9606044468071	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTGGTGGTTTATG	NA	False	NA	10	True	AATAAA	-11	NA	54937271	54944581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
ENSMUSG00000025875.15_17	chr13	+	1803	7	NIC	ENSMUSG00000025875.15	novel	1048	9	NA	NA	-4	0	intron_retention	FALSE	canonical	3	379	junction_1	14.3488288333539	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTGGTGGTTTATG	NA	False	NA	10	True	AATAAA	-11	NA	54937271	54944581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_54937495_54940421_54940473_54940552_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
ENSMUSG00000025875.15_3	chr13	+	1299	6	FSM	ENSMUSG00000025875.15	ENSMUST00000163796.8	712	6	-6	-581	-6	0	multi-exon	FALSE	canonical	2	9	junction_1	159.188441791482	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTGGTGGTTTATG	NA	False	NA	10	True	AATAAA	-11	NA	54937269	54944581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_54937495_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
ENSMUSG00000025875.15_5	chr13	+	1114	9	NIC	ENSMUSG00000025875.15	novel	1048	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_8	99.0959131347	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTGGTGGTTTATG	NA	False	NA	10	True	AATAAA	-11	NA	54937273	54944581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969_54944032_54944410
ENSMUSG00000025875.15_6	chr13	+	1488	8	NIC	ENSMUSG00000025875.15	novel	1048	9	NA	NA	-1	0	intron_retention	FALSE	canonical	3	33	junction_5	126.228493823943	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTGGTGGTTTATG	NA	False	NA	10	True	AATAAA	-11	NA	54937274	54944581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943227_54943272_54943778_54943896_54943969
ENSMUSG00000025876.16_0	chr13	+	3830	15	FSM	ENSMUSG00000025876.16	ENSMUST00000109994.9	3827	15	-9	6	-9	-6	multi-exon	TRUE	canonical	1	4	junction_1	2.26778683805536	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAACCGGAGTGTCGCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55097214	55153825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55097545_55138692_55138915_55143609_55143754_55143972_55144077_55144216_55144398_55145728_55145894_55147148_55147338_55147434_55147738_55150278_55150367_55150645_55150815_55150995_55151230_55151354_55151505_55151590_55151756_55152290_55152470_55152618
ENSMUSG00000025876.16_10	chr13	+	4077	14	NIC	ENSMUSG00000025876.16	novel	3827	15	NA	NA	10	-19	intron_retention	FALSE	canonical	1	4	junction_1	2.28190722679867	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATATATATTGCTAAC	NA	False	NA	NA	False	AATAAA	-2	NA	55097233	55153812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_55097545_55138692_55138915_55143609_55143754_55143972_55144077_55144216_55144398_55145728_55145894_55147148_55147338_55147434_55147738_55150278_55150815_55150995_55151230_55151354_55151505_55151590_55151756_55152290_55152470_55152618
ENSMUSG00000025878.17_0	chr13	-	2463	15	FSM	ENSMUSG00000025878.17	ENSMUST00000026997.12	2931	15	61	407	20	8	multi-exon	FALSE	canonical	0	0	junction_10	39.2030949423795	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTCAATAGATGGAAGT	NA	False	NA	NA	False	AATATA	-20	NA	55248047	55176099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223808_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
ENSMUSG00000025878.17_15	chr13	-	1721	10	ISM	ENSMUSG00000025878.17	ENSMUST00000026997.12	2931	15	24529	412	10426	3	3prime_fragment	FALSE	canonical	3	94	junction_9	14.7254713395816	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTATTTCAATAGATG	NA	False	NA	NA	False	AATATA	-15	NA	55223579	55176104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070
ENSMUSG00000025878.17_25	chr13	-	548	4	FSM	ENSMUSG00000025878.17	ENSMUST00000133187.2	2735	4	58	2129	13	192	multi-exon	FALSE	canonical	3	148	junction_3	8.65383665716478	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTCCATGTTGCTGATT	NA	False	NA	NA	False	AATAAA	-22	NA	55248054	55225077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55225341_55233422_55233508_55240939_55241095_55248009
ENSMUSG00000025878.17_28	chr13	-	2393	14	NIC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	21	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	49.8302443746553	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTATTTCAATAGATG	NA	False	NA	NA	False	AATATA	-15	NA	55248046	55176104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_55176532_55177228_55177272_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223808_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
ENSMUSG00000025878.17_6	chr13	-	1622	13	FSM	ENSMUSG00000025878.17	ENSMUST00000099496.4	1678	13	66	-10	20	10	multi-exon	FALSE	canonical	3	14	junction_9	37.4398591818339	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAATAGATGGAAGTGT	NA	False	NA	NA	False	AATATA	-22	NA	55248047	55176097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55225215_55225341_55233422_55233508_55240939_55241095_55248009
ENSMUSG00000025880.12_0	chr18	+	4423	4	FSM	ENSMUSG00000025880.12	ENSMUST00000026999.10	4278	4	-160	15	-160	-15	multi-exon	FALSE	canonical	3	1522	junction_2	99.0667563929607	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTATACTGCATCCCT	NA	False	NA	4	True	ATTAAA	-9	NA	75500439	75528991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_75502640_75503965_75504020_75508944_75509020_75526897
ENSMUSG00000025880.12_13	chr18	+	1752	1	ISM	ENSMUSG00000025880.12	ENSMUST00000026999.10	4278	4	26640	15	19255	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTATACTGCATCCCT	NA	False	NA	4	True	ATTAAA	-9	NA	75527239	75528991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_75527200_75529000
ENSMUSG00000025885.19_0	chr18	+	2909	13	FSM	ENSMUSG00000025885.19	ENSMUST00000120161.8	3400	13	-235	726	-167	-726	multi-exon	FALSE	canonical	0	0	junction_1	0.640095478989051	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAGGTGTAATGCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	74575440	74791405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_74575879_74702837_74702949_74710525_74710698_74713460_74713606_74749993_74750151_74758632_74758777_74760241_74760324_74767531_74767640_74771112_74771223_74776997_74777264_74786430_74786513_74787000_74787142_74790452
ENSMUSG00000025885.19_1	chr18	+	6208	39	FSM	ENSMUSG00000025885.19	ENSMUST00000074157.13	6745	39	-155	692	-155	-4	multi-exon	TRUE	canonical	0	0	junction_1	1.36943282434291	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTGCCTTTGTGGGTCT	NA	False	NA	NA	False	ATTAAA	-12	NA	74575452	74903872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_74575879_74702837_74702949_74710525_74710698_74713460_74713606_74749993_74750151_74758632_74758777_74760241_74760324_74767531_74767640_74771112_74771223_74776997_74777264_74786430_74786513_74787000_74787142_74794677_74794801_74795733_74795818_74809671_74809828_74810491_74810590_74815619_74815707_74828442_74828555_74831256_74831469_74833642_74833800_74834515_74834756_74840934_74841169_74846618_74846704_74847896_74848031_74849029_74849150_74850040_74850179_74853907_74853974_74855403_74855644_74856827_74856929_74864715_74864915_74866981_74867076_74869216_74869361_74873544_74873697_74875196_74875287_74877691_74877843_74892097_74892384_74893920_74894096_74895646_74895728_74903367
ENSMUSG00000025889.14_0	chr6	-	1129	6	FSM	ENSMUSG00000025889.14	ENSMUST00000114268.5	1280	6	145	6	13	-6	multi-exon	FALSE	canonical	2	14	junction_1	4.2614551505325	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCAAAATCTTTCCTGG	7719	False	NA	-12	True	AATAAA	-14	NA	60805843	60708568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_60709146_60710087_60710172_60792600_60792744_60795307_60795350_60804464_60804612_60805707
ENSMUSG00000025889.14_1	chr6	-	1118	6	FSM	ENSMUSG00000025889.14	ENSMUST00000163779.8	1188	6	60	10	60	-6	multi-exon	FALSE	canonical	2	3	junction_5	6.34350061086148	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCAAAATCTTTCCTGG	6783	False	NA	-12	True	AATAAA	-14	NA	60806779	60708568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_60709146_60710087_60710172_60792600_60792744_60795307_60795350_60804464_60804612_60806654
ENSMUSG00000025892.17_0	chr9	-	2969	11	FSM	ENSMUSG00000025892.17	ENSMUST00000163309.2	2338	11	51	-682	-41	682	multi-exon	FALSE	canonical	0	0	junction_1	0.6	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTATTCTTCCATAAATAT	-6	True	NA	0	True	AATAAA	-17	NA	4796183	4477580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_4478853_4480177_4480289_4502373_4502479_4503561_4503730_4513222_4513382_4519485_4519540_4537634_4537820_4664767_4665008_4793809_4793969_4795186_4795364_4795844
ENSMUSG00000025893.9_0	chr9	+	687	3	FSM	ENSMUSG00000025893.9	ENSMUST00000049648.9	2231	3	-117	1661	-117	-1640	multi-exon	TRUE	canonical	3	30	junction_1	14.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTTTGCATTTGTTATC	NA	False	NA	NA	False	AATAAA	-17	NA	4309715	4330071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_4309935_4316826_4317072_4329848
ENSMUSG00000025893.9_1	chr9	+	675	4	FSM	ENSMUSG00000025893.9	ENSMUST00000212221.2	2313	4	-2	1640	0	-1640	multi-exon	FALSE	canonical	3	18	junction_1	18.4571575998762	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTTTGCATTTGTTATC	-2	True	NA	NA	False	AATAAA	-17	NA	4309832	4330071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_4309935_4313701_4313807_4316826_4317072_4329848
ENSMUSG00000025894.12_2	chr9	-	1595	6	FSM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	1	1247	1	-1075	multi-exon	FALSE	canonical	3	643	junction_4	99.1576522513517	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATTCCATCGACTCAGA	2	True	NA	-40	True	CATAAA	-39	NA	4309466	4296039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309253
ENSMUSG00000025894.12_4	chr9	-	1544	5	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	1	-1004	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	350.365077454931	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAACTAAGTCTGTCG	2	True	NA	31	True	AGTAAA	-10	NA	4309466	4295968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4308693_4308920_4309253
ENSMUSG00000025894.12_6	chr9	-	1635	6	FSM	ENSMUSG00000025894.12	ENSMUST00000212066.2	2810	6	2	1173	0	-1002	multi-exon	FALSE	canonical	3	41	junction_5	303.486671865504	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACTAAGTCTGTCGTC	1	True	NA	33	True	AGTAAA	-12	NA	4309467	4295966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309287
ENSMUSG00000025894.12_7	chr9	-	1316	4	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	1	-1006	combination_of_known_splicesites	FALSE	canonical	3	71	junction_3	376.029549666276	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAAAAAACTAAGTCTGT	2	True	NA	29	True	AGTAAA	-8	NA	4309466	4295970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4309253
ENSMUSG00000025894.12_9	chr9	-	1921	5	ISM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	8	1248	8	-1076	intron_retention	FALSE	canonical	3	643	junction_4	110.637640520756	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGATTCCATCGACTCAG	9	True	NA	-41	True	CATAAA	-38	NA	4309459	4296040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693
ENSMUSG00000025898.7_1	chr9	+	3841	18	FSM	ENSMUSG00000025898.7	ENSMUST00000027027.7	4446	18	496	109	0	-109	multi-exon	TRUE	canonical	3	200	junction_7	32.0504576240346	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTACTGAATCTGTAG	9	True	NA	12	True	TATAAA	-13	NA	3404087	3479127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437_3431088_3441054_3441146_3442960_3443048_3447236_3447354_3450013_3450152_3454539_3454753_3456732_3456850_3458733_3458890_3460050_3460132_3475482_3475585_3477816
ENSMUSG00000025898.7_32	chr9	+	2828	11	ISM	ENSMUSG00000025898.7	ENSMUST00000027027.7	4446	18	27088	102	-9883	-102	3prime_fragment	FALSE	canonical	3	209	junction_5	24.7095123383688	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAATCTGTAGCATTTCT	NA	False	NA	19	True	TATAAA	-20	NA	3430679	3479134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_3431088_3441054_3441146_3442960_3443048_3447236_3447354_3450013_3450152_3454539_3454753_3456732_3456850_3458733_3458890_3460050_3460132_3475482_3475585_3477816
ENSMUSG00000025899.15_11	chr9	+	3487	11	NIC	ENSMUSG00000025899.15	novel	3603	12	NA	NA	0	35	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	20.4227813972534	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCATCATGTTCTTTAA	7	True	NA	NA	False	ATTAAA	-33	NA	3335492	3386964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_3335749_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
ENSMUSG00000025899.15_18	chr9	+	3387	11	FSM	ENSMUSG00000025899.15	ENSMUST00000165105.2	2256	11	77	-1208	77	121	multi-exon	FALSE	canonical	2	45	junction_5	9.88989383158384	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTGTTGTCTATTTTT	3002	False	NA	NA	False	TTTAAA	-38	NA	3338521	3387050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
ENSMUSG00000025899.15_2	chr9	+	3559	12	FSM	ENSMUSG00000025899.15	ENSMUST00000211933.2	7674	12	9	4106	-6	119	multi-exon	FALSE	canonical	2	35	junction_1	12.2683493875181	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACATTTTGTTGTCTATTT	1	True	NA	NA	False	TTTAAA	-36	NA	3335486	3387048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_3335595_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
ENSMUSG00000025899.15_24	chr9	+	3339	1	ISM	ENSMUSG00000025899.15	ENSMUST00000211933.2	7674	12	51884	454	8155	-454	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAATGGGACTATGGCAA	8083	False	NA	NA	False	AATAAA	-12	NA	3387361	3390700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_3387400_3390700
ENSMUSG00000025899.15_3	chr9	+	3706	12	FSM	ENSMUSG00000025899.15	ENSMUST00000053407.13	3603	12	14	-117	-1	117	multi-exon	FALSE	canonical	2	19	junction_1	15.6162661540793	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACATTTTGTTGTCTAT	6	True	NA	NA	False	AATGAA	-45	NA	3335491	3387046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_3335749_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
ENSMUSG00000025899.15_4	chr9	+	3434	11	NIC	ENSMUSG00000025899.15	novel	7674	12	NA	NA	2	123	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	19.3713706278105	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTTGTCTATTTTTTT	-6	True	NA	NA	False	TTTAAA	-40	NA	3335479	3387052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_3335595_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
ENSMUSG00000025902.14_0	chr1	-	1786	2	FSM	ENSMUSG00000025902.14	ENSMUST00000191939.2	840	2	132	-1078	1	3	multi-exon	FALSE	canonical	3	6	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCTCTCGCATCGATTT	NA	False	NA	NA	False	AATAAA	-16	NA	4563826	4561609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_4562892_4563322
ENSMUSG00000025903.15_0	chr1	+	2440	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	62	5	-11	-5	multi-exon	FALSE	canonical	3	734	junction_8	45.3636349403352	1054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGATTGCTTTATATAGTA	NA	False	NA	16	True	AATAAA	-17	NA	4878107	4916957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
ENSMUSG00000025903.15_32	chr1	+	966	1	ISM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	37946	5	8864	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGATTGCTTTATATAGTA	NA	False	NA	16	True	AATAAA	-17	NA	4915991	4916957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_4916000_4917000
ENSMUSG00000025903.15_4	chr1	+	2350	8	FSM	ENSMUSG00000025903.15	ENSMUST00000115529.8	930	8	-38	-1382	-23	-5	multi-exon	FALSE	canonical	3	36	junction_6	273.277312991617	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGATTGCTTTATATAGTA	NA	False	NA	16	True	AATAAA	-17	NA	4878095	4916957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4911178_4911356_4915185
ENSMUSG00000025907.15_1	chr1	+	5953	15	ISM	ENSMUSG00000025907.15	ENSMUST00000027040.13	7607	24	19	24785	1	605	5prime_fragment	FALSE	canonical	3	127	junction_3	10.2869542903344	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACACTTCAAATAATAT	NA	False	NA	NA	False	AATAAA	-6	NA	6284887	6322087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_6285182_6298163_6298274_6300182_6300298_6304184_6304312_6304452_6304624_6308485_6308689_6310175_6310603_6314328_6314500_6315018_6315204_6315381_6315569_6315648_6315731_6315821_6315884_6317929_6318034_6318289_6318417_6318499
ENSMUSG00000025907.15_4	chr1	+	6037	14	ISM	ENSMUSG00000025907.15	ENSMUST00000027040.13	7607	24	10	24793	-8	597	intron_retention	FALSE	canonical	3	127	junction_3	10.5572544395679	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAAAACACTTCA	NA	False	NA	NA	False	ATTAAA	-3	NA	6284878	6322079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_6285182_6298163_6298274_6300182_6300298_6304184_6304312_6304452_6304624_6308485_6308689_6310175_6310603_6314328_6314500_6315018_6315204_6315381_6315569_6315648_6315731_6315821_6315884_6317929_6318034_6318289
ENSMUSG00000025907.15_5	chr1	+	5438	24	FSM	ENSMUSG00000025907.15	ENSMUST00000027040.13	7607	24	19	2150	1	8	multi-exon	FALSE	canonical	3	76	junction_19	28.8457209021846	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAATGGTTTTGTTTTGT	NA	False	NA	17	True	AATAAA	-23	NA	6284887	6344722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_6285182_6298163_6298274_6300182_6300298_6304184_6304312_6304452_6304624_6308485_6308689_6310175_6310603_6314328_6314500_6315018_6315204_6315381_6315569_6315648_6315731_6315821_6315884_6317929_6318034_6318289_6318417_6318499_6320392_6331153_6331320_6333057_6333167_6333247_6333489_6334765_6334815_6335797_6335846_6338921_6338981_6340914_6341052_6342924_6342996_6344421
ENSMUSG00000025911.15_0	chr1	+	1612	11	NIC	ENSMUSG00000025911.15	novel	2022	13	NA	NA	8	-167	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	29.8410790689613	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATGTCTGTTTCATAA	NA	False	NA	NA	False	AATAAA	-19	NA	9618287	9646959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_9618377_9623147_9623202_9623542_9623698_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ENSMUSG00000025911.15_1	chr1	+	1543	10	NIC	ENSMUSG00000025911.15	novel	2022	13	NA	NA	-16	-169	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	26.6333124739176	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATATGTCTGTTTCAT	NA	False	NA	NA	False	AATAAA	-17	NA	9618300	9646957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_9618377_9623542_9623698_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ENSMUSG00000025911.15_13	chr1	+	1721	11	NIC	ENSMUSG00000025911.15	novel	2022	13	NA	NA	-9	-181	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	20.5642894358157	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTAAAACTCTTGAAAATA	NA	False	NA	NA	False	AATAAA	-5	NA	9618307	9646945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_9618377_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ENSMUSG00000025911.15_15	chr1	+	3032	8	ISM	ENSMUSG00000025911.15	ENSMUST00000027044.15	2022	13	5765	167	5701	-167	3prime_fragment	FALSE	canonical	3	51	junction_6	9.37212540963242	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATGTCTGTTTCATAA	NA	False	NA	NA	False	AATAAA	-19	NA	9624044	9646959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ENSMUSG00000025911.15_2	chr1	+	1805	12	NIC	ENSMUSG00000025911.15	novel	2022	13	NA	NA	11	-168	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	25.4879650744496	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATATGTCTGTTTCATA	NA	False	NA	NA	False	AATAAA	-18	NA	9618290	9646958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_9618377_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ENSMUSG00000025911.15_3	chr1	+	1879	14	FSM	ENSMUSG00000025911.15	ENSMUST00000144177.8	3239	14	124	1236	17	-167	multi-exon	FALSE	canonical	0	0	junction_4	25.1132346823944	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATGTCTGTTTCATAA	NA	False	NA	NA	False	AATAAA	-19	NA	9618296	9646959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_9618377_9620131_9620170_9621941_9621983_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ENSMUSG00000025911.15_4	chr1	+	1640	12	NIC	ENSMUSG00000025911.15	novel	2022	13	NA	NA	16	-169	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	26.0923344558392	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATATGTCTGTTTCAT	NA	False	NA	NA	False	AATAAA	-17	NA	9618295	9646957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_9618377_9620131_9620170_9623147_9623202_9623542_9623698_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ENSMUSG00000025911.15_5	chr1	+	1837	13	FSM	ENSMUSG00000025911.15	ENSMUST00000027044.15	2022	13	18	167	18	-167	multi-exon	FALSE	canonical	0	0	junction_3	21.4416197045735	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATGTCTGTTTCATAA	NA	False	NA	NA	False	AATAAA	-19	NA	9618297	9646959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_9618377_9620131_9620170_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ENSMUSG00000025912.17_1	chr1	-	5146	16	FSM	ENSMUSG00000025912.17	ENSMUST00000088658.11	4980	16	-166	0	-166	0	multi-exon	FALSE	canonical	1	5	junction_10	11.7158961339806	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCTGGCTTGGCATTGC	NA	False	NA	-8	True	AATAAA	-12	NA	9770600	9737639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_9740238_9741803_9741984_9742436_9742542_9742764_9742882_9743325_9743441_9743969_9744113_9746191_9746561_9748496_9748731_9752009_9752115_9753321_9753394_9755860_9756036_9757785_9758007_9760305_9760399_9762942_9763015_9763511_9763618_9770159
ENSMUSG00000025912.17_12	chr1	-	2983	5	ISM	ENSMUSG00000025912.17	ENSMUST00000115468.9	2493	15	26234	-2124	4820	2	3prime_fragment	FALSE	canonical	3	18	junction_1	9.44391338376205	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGGCTTGGCATTGCTC	4398	False	NA	-6	True	AATAAA	-14	NA	9744015	9737637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_9740238_9742436_9742542_9742764_9742882_9743325_9743441_9743969
ENSMUSG00000025912.17_27	chr1	-	2882	3	ISM	ENSMUSG00000025912.17	ENSMUST00000088658.11	4980	16	27896	-2	6297	2	3prime_fragment	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGGCTTGGCATTGCTC	5875	False	NA	-6	True	AATAAA	-14	NA	9742538	9737637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_9740238_9741803_9741984_9742436
ENSMUSG00000025912.17_5	chr1	-	1156	1	Genic_Genomic	ENSMUSG00000025912.17	novel	NA	NA	NA	NA	10042	2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGGCTTGGCATTGCTC	9620	False	NA	-6	True	AATAAA	-14	NA	9738793	9737637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_-_9737600_9738800
ENSMUSG00000025912.17_6	chr1	-	4963	15	FSM	ENSMUSG00000025912.17	ENSMUST00000115468.9	2493	15	-348	-2122	-163	0	multi-exon	FALSE	canonical	1	5	junction_9	10.6999904634709	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCTGGCTTGGCATTGC	NA	False	NA	-8	True	AATAAA	-12	NA	9770597	9737639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_9740238_9742436_9742542_9742764_9742882_9743325_9743441_9743969_9744113_9746191_9746561_9748496_9748731_9752009_9752115_9753321_9753394_9755860_9756036_9757785_9758007_9760305_9760399_9762942_9763015_9763511_9763618_9770159
ENSMUSG00000025912.17_8	chr1	-	3457	7	ISM	ENSMUSG00000025912.17	ENSMUST00000088658.11	4980	16	24047	-3	2448	3	3prime_fragment	FALSE	canonical	3	13	junction_1	11.4987922071069	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGCTTGGCATTGCTCA	2026	False	NA	-5	True	AATAAA	-15	NA	9746387	9737636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_9740238_9741803_9741984_9742436_9742542_9742764_9742882_9743325_9743441_9743969_9744113_9746191
ENSMUSG00000025912.17_9	chr1	-	3182	6	ISM	ENSMUSG00000025912.17	ENSMUST00000115468.9	2493	15	23954	-2122	2540	0	3prime_fragment	FALSE	canonical	3	18	junction_1	9.2217135067188	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCTGGCTTGGCATTGC	2118	False	NA	-8	True	AATAAA	-12	NA	9746295	9737639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_9740238_9742436_9742542_9742764_9742882_9743325_9743441_9743969_9744113_9746191
ENSMUSG00000025915.15_0	chr1	+	2845	17	FSM	ENSMUSG00000025915.15	ENSMUST00000166384.8	3706	17	-127	988	-127	2	multi-exon	TRUE	canonical	3	15	junction_1	31.0518090254014	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTGTGAATGTGTGTC	NA	False	NA	NA	False	AATAAA	-13	NA	9868204	9970080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_9868472_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
ENSMUSG00000025915.15_14	chr1	+	3382	17	FSM	ENSMUSG00000025915.15	ENSMUST00000097826.6	2728	17	16	-670	16	-247	multi-exon	FALSE	canonical	3	32	junction_1	27.8654692226777	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGCAATATTGTATTTT	9955	False	NA	NA	False	ATTAAA	-13	NA	9918637	9970748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_9918774_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
ENSMUSG00000025915.15_4	chr1	+	3311	17	FSM	ENSMUSG00000025915.15	ENSMUST00000171265.8	3680	17	49	320	0	-247	multi-exon	FALSE	canonical	3	97	junction_4	18.6899036915657	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGCAATATTGTATTTT	9863	False	NA	NA	False	ATTAAA	-13	NA	9918545	9970748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_9918611_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
ENSMUSG00000025915.15_7	chr1	+	3493	16	NIC	ENSMUSG00000025915.15	novel	3680	17	NA	NA	1	-5	combination_of_known_splicesites	FALSE	canonical	1	4	junction_9	34.1285152849572	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGAACAGTTGGACTATT	9864	False	NA	NA	False	ATTAAA	-9	NA	9918546	9971063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_9918611_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
ENSMUSG00000025917.10_0	chr1	-	1234	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	5	10	combination_of_known_junctions	FALSE	canonical	3	86	junction_7	318.204272730071	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTCCTTCTGTGGTTT	NA	False	NA	-15	True	AATAAA	-12	NA	10108369	10095057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10108143
ENSMUSG00000025917.10_1	chr1	-	1283	8	FSM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	183	232	1	10	multi-exon	FALSE	canonical	3	713	junction_7	104.105715501119	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTCCTTCTGTGGTTT	NA	False	NA	-15	True	AATAAA	-12	NA	10108169	10095057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
ENSMUSG00000025917.10_3	chr1	-	1297	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	-5	10	combination_of_known_junctions	FALSE	canonical	3	100	junction_7	313.343653036022	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTCCTTCTGTGGTTT	NA	False	NA	-15	True	AATAAA	-12	NA	10108175	10095057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107886
ENSMUSG00000025917.10_6	chr1	-	1617	7	ISM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	2355	232	-644	10	3prime_fragment	FALSE	canonical	3	939	junction_3	42.5976003497328	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTCCTTCTGTGGTTT	NA	False	NA	-15	True	AATAAA	-12	NA	10105997	10095057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153
ENSMUSG00000025920.20_1	chr1	-	2724	13	FSM	ENSMUSG00000025920.20	ENSMUST00000027052.13	2763	13	42	-3	-4	-3	multi-exon	TRUE	canonical	0	0	junction_2	35.7596140918774	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGAGTTGTTCCTTCAG	NA	False	NA	NA	False	AGTAAA	-16	NA	16589488	16299030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_16300091_16301226_16301316_16415927_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16579565_16579633_16589396
ENSMUSG00000025920.20_5	chr1	-	3119	12	FSM	ENSMUSG00000025920.20	ENSMUST00000128957.9	3907	12	-25	813	-2	0	multi-exon	FALSE	canonical	3	38	junction_10	22.8368268627019	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAAGACTTTGATTCA	NA	False	NA	NA	False	AATAAA	-10	NA	16589496	16414522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16556243_16556375_16579565_16579633_16589396
ENSMUSG00000025920.20_7	chr1	-	1013	1	ISM	ENSMUSG00000025920.20	ENSMUST00000159558.8	3901	12	174001	791	30185	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCACTGCTCATTTATAAA	NA	False	NA	NA	False	AATAAA	-16	NA	16415434	16414421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_16414400_16415400
ENSMUSG00000025920.20_8	chr1	-	2985	11	FSM	ENSMUSG00000025920.20	ENSMUST00000162007.8	2964	11	-29	8	1	0	multi-exon	FALSE	canonical	3	67	junction_9	11.3207773584679	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAAGACTTTGATTCA	NA	False	NA	NA	False	AATAAA	-10	NA	16589493	16414522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16579565_16579633_16589396
ENSMUSG00000025921.8_1	chr1	+	2832	6	FSM	ENSMUSG00000025921.8	ENSMUST00000027053.8	3587	6	-437	1192	-437	-5	multi-exon	FALSE	canonical	2	4	junction_1	4.02988833592198	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTGAGTTTGTGGTTAT	NA	False	NA	NA	False	ATTAAA	-8	NA	16175560	16202766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_16176531_16178018_16178255_16198388_16198488_16199419_16199566_16201298_16201431_16201517
ENSMUSG00000025921.8_4	chr1	+	4148	4	ISM	ENSMUSG00000025921.8	ENSMUST00000027053.8	3587	6	19867	1194	-4861	-7	3prime_fragment	FALSE	canonical	3	13	junction_1	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAACTGAGTTTGTGGTT	NA	False	NA	NA	False	ATTAAA	-6	NA	16195864	16202764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_16198488_16199419_16199566_16201298_16201431_16201517
ENSMUSG00000025925.15_3	chr1	+	1632	10	FSM	ENSMUSG00000025925.15	ENSMUST00000188371.7	2268	10	12	624	1	-42	multi-exon	FALSE	canonical	3	905	junction_7	69.1671798285292	750	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACGGTTTGTTCTATTC	NA	False	NA	9	True	ATTAAA	-14	NA	15875881	15913652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ENSMUSG00000025930.7_0	chr1	-	1736	2	FSM	ENSMUSG00000025930.7	ENSMUST00000027062.7	1741	2	-1	6	1	-6	multi-exon	FALSE	canonical	3	23	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAACATGCATTGTAAAA	NA	False	NA	-2	True	AATAAA	-15	NA	14826215	14823575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_14824550_14825453
ENSMUSG00000025930.7_1	chr1	-	2640	1	FSM	ENSMUSG00000025930.7	ENSMUST00000190471.2	1226	1	1	-1415	1	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAACATGCATTGTAAAA	NA	False	NA	-2	True	AATAAA	-15	NA	14826215	14823575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_14823600_14826200
ENSMUSG00000025930.7_2	chr1	-	1134	3	FSM	ENSMUSG00000025930.7	ENSMUST00000190719.2	741	3	1	-394	1	-6	multi-exon	FALSE	canonical	1	2	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAACATGCATTGTAAAA	NA	False	NA	-2	True	AATAAA	-15	NA	14825576	14823575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_14824550_14824729_14824767_14825453
ENSMUSG00000025930.7_3	chr1	-	600	1	FSM	ENSMUSG00000025930.7	ENSMUST00000188982.2	731	1	714	-583	714	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAACATGCATTGTAAAA	NA	False	NA	-2	True	AATAAA	-15	NA	14824175	14823575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_14823600_14824200
ENSMUSG00000025931.16_0	chr1	+	4772	3	FSM	ENSMUSG00000025931.16	ENSMUST00000189400.7	5330	3	-35	593	-35	2	multi-exon	FALSE	canonical	3	9	junction_2	2.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGATGTCAGGGTTACA	9065	False	NA	NA	False	AATAAA	-17	NA	20960794	21009281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_20960911_21002283_21002464_21004805
ENSMUSG00000025931.16_3	chr1	+	3119	1	ISM	ENSMUSG00000025931.16	ENSMUST00000189400.7	5330	3	45331	595	13678	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGATGTCAGGGTTA	NA	False	NA	NA	False	AATAAA	-15	NA	21006160	21009279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_21006200_21009300
ENSMUSG00000025932.15_0	chr1	-	1515	1	ISM	ENSMUSG00000025932.15	ENSMUST00000027066.13	4347	18	139732	0	61024	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCCTTGGATGTCAGTA	NA	False	NA	-11	True	AATAAA	-21	NA	14240692	14239177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_14239200_14240700
ENSMUSG00000025932.15_1	chr1	-	4035	18	FSM	ENSMUSG00000025932.15	ENSMUST00000027066.13	4347	18	307	5	-57	-1	multi-exon	FALSE	canonical	3	31	junction_13	8.24998689314257	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTATGCTCCTTGGATGT	NA	False	NA	-16	True	AATAAA	-16	NA	14380117	14239182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344432_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14379869
ENSMUSG00000025932.15_12	chr1	-	4022	18	NIC	ENSMUSG00000025932.15	novel	4347	18	NA	NA	-41	-1	combination_of_known_junctions	FALSE	canonical	3	18	junction_13	10.2268389688172	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTATGCTCCTTGGATGT	NA	False	NA	-16	True	AATAAA	-16	NA	14380101	14239182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344435_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14379869
ENSMUSG00000025932.15_21	chr1	-	3887	18	NIC	ENSMUSG00000025932.15	novel	4347	18	NA	NA	-41	-1	combination_of_known_junctions	FALSE	canonical	3	15	junction_17	12.8453672663576	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTATGCTCCTTGGATGT	NA	False	NA	-16	True	AATAAA	-16	NA	14374893	14239182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344435_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14374796
ENSMUSG00000025932.15_39	chr1	-	3967	17	FSM	ENSMUSG00000025932.15	ENSMUST00000190337.7	2199	17	-82	-1686	-24	1	multi-exon	FALSE	canonical	3	31	junction_13	8.4483726243579	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTCCTTGGATGTCA	NA	False	NA	-14	True	AATAAA	-18	NA	14374876	14239180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344432_14344757_14344828_14353344_14353423_14372993_14373122_14374648
ENSMUSG00000025932.15_4	chr1	-	4248	18	FSM	ENSMUSG00000025932.15	ENSMUST00000168081.9	4366	18	117	1	1	-1	multi-exon	FALSE	canonical	3	15	junction_12	12.3526610612498	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTATGCTCCTTGGATGT	NA	False	NA	-16	True	AATAAA	-16	NA	14380342	14239182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341052_14344288_14344435_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14379869
ENSMUSG00000025932.15_8	chr1	-	3885	18	NIC	ENSMUSG00000025932.15	novel	4347	18	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_17	11.4532297011906	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCCTTGGATGTCAGTA	NA	False	NA	-11	True	AATAAA	-21	NA	14374889	14239177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344432_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14374796
ENSMUSG00000025932.15_9	chr1	-	4038	18	NIC	ENSMUSG00000025932.15	novel	4347	18	NA	NA	-75	-1	combination_of_known_junctions	FALSE	canonical	3	15	junction_12	10.8439704675792	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTATGCTCCTTGGATGT	NA	False	NA	-16	True	AATAAA	-16	NA	14380135	14239182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341052_14344288_14344432_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14379869
ENSMUSG00000025933.16_0	chr1	+	1084	5	FSM	ENSMUSG00000025933.16	ENSMUST00000027064.8	1261	5	178	-1	178	1	multi-exon	FALSE	canonical	3	9	junction_4	35.5984550226551	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTCTCATTCATTTCT	NA	False	NA	15	True	AATAAA	-15	NA	21289063	21300389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299631
ENSMUSG00000025933.16_1	chr1	+	1041	5	FSM	ENSMUSG00000025933.16	ENSMUST00000027065.12	1168	5	125	2	38	1	multi-exon	FALSE	canonical	3	87	junction_4	3.08220700148449	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTCTCATTCATTTCT	NA	False	NA	15	True	AATAAA	-15	NA	21288923	21300389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299814
ENSMUSG00000025933.16_4	chr1	+	3937	4	ISM	ENSMUSG00000025933.16	ENSMUST00000027064.8	1261	5	52	0	52	0	intron_retention	FALSE	canonical	3	88	junction_3	2.94392028877595	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCTTCTCATTCATTTC	NA	False	NA	14	True	AATAAA	-14	NA	21288937	21300388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815
ENSMUSG00000025934.16_1	chr1	+	1033	6	NNC	ENSMUSG00000025934.16	novel	1457	7	NA	NA	3319	189	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	18.4867520132661	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCTGGAGTATTCGAAC	NA	False	NA	11	True	AATAAA	-17	NA	21327063	21335434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_21327270_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
ENSMUSG00000025934.16_3	chr1	+	1006	5	ISM	ENSMUSG00000025934.16	ENSMUST00000121676.8	894	8	16545	-189	3631	189	3prime_fragment	FALSE	canonical	3	69	junction_1	2	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCTGGAGTATTCGAAC	NA	False	NA	11	True	AATAAA	-17	NA	21327375	21335434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
ENSMUSG00000025935.11_1	chr1	-	2809	11	FSM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	46	83	11	-83	multi-exon	FALSE	canonical	3	1226	junction_5	62.5811473208985	1180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGCTGTTTCCTGAACAA	9702	False	NA	-8	True	AATAAA	-15	NA	13660088	13635004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_13636621_13639694_13639856_13640162_13640307_13642026_13642132_13642227_13642299_13646591_13646677_13648323_13648383_13649673_13649791_13649913_13650036_13651246_13651311_13659823
ENSMUSG00000025937.7_0	chr1	-	1864	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	33	2597	33	-2597	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	1625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGTGATTAATAATAAGTAA	NA	False	NA	1	True	AATATA	-16	NA	13730737	13696150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025937.7_1	chr1	-	1606	1	ISM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	34078	1533	11943	-1533	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAACAAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	13696692	13695086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_13695100_13696700
ENSMUSG00000025937.7_3	chr1	-	3364	6	NIC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	33	-1548	intron_retention	FALSE	canonical	3	2151	junction_4	166.606842596575	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	13730737	13695101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025938.17_0	chr1	-	8546	10	FSM	ENSMUSG00000025938.17	ENSMUST00000188454.7	8463	10	-90	7	-90	-4	multi-exon	FALSE	canonical	1	1	junction_1	2.330686329267	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAAATTTGGTTGTCTCT	NA	False	NA	NA	False	AATAAA	-10	NA	13062964	12936779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_12942553_12946533_12946599_12949361_12949604_12951516_12951677_12964650_12964850_12991261_12991427_13009212_13009425_13014203_13014337_13059803_13061188_13062751
ENSMUSG00000025938.17_1	chr1	-	1337	1	ISM	ENSMUSG00000025938.17	ENSMUST00000188454.7	8463	10	124762	3	57155	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGGTTGTCTCTAGAT	NA	False	NA	NA	False	AATAAA	-14	NA	12938112	12936775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_12936800_12938100
ENSMUSG00000025938.17_4	chr1	-	3721	4	ISM	ENSMUSG00000025938.17	ENSMUST00000188454.7	8463	10	-70	70641	-70	38629	5prime_fragment	FALSE	canonical	2	5	junction_2	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAAAAAGTAAAC	NA	False	NA	NA	False	NA	NA	NA	13062944	13007413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_13009425_13014203_13014337_13059803_13061188_13062751
ENSMUSG00000025939.20_12	chr1	-	1498	5	NIC	ENSMUSG00000025939.20	novel	2181	6	NA	NA	-8	-358	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	178.300834266136	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGAGTGTGGACATT	NA	False	NA	NA	False	AATACA	-25	NA	16689491	16640363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_16641507_16652150_16652227_16655499_16655656_16672485_16672578_16689460
ENSMUSG00000025939.20_4	chr1	-	1602	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	221	358	-9	-358	multi-exon	FALSE	canonical	3	378	junction_5	28.7888867447145	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGAGTGTGGACATT	NA	False	NA	NA	False	AATACA	-25	NA	16689492	16640363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
ENSMUSG00000025939.20_5	chr1	-	1522	6	NIC	ENSMUSG00000025939.20	novel	2181	6	NA	NA	-8	-358	combination_of_known_junctions	FALSE	canonical	3	127	junction_3	123.769139933992	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGAGTGTGGACATT	NA	False	NA	NA	False	AATACA	-25	NA	16689491	16640363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_16641507_16652150_16652227_16655499_16655577_16668174_16668278_16672485_16672578_16689460
ENSMUSG00000025939.20_7	chr1	-	1572	5	ISM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	17134	358	16904	-358	3prime_fragment	FALSE	canonical	3	429	junction_2	12.5772612281053	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGAGTGTGGACATT	NA	False	NA	NA	False	AATACA	-25	NA	16672579	16640363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485
ENSMUSG00000025940.7_0	chr1	+	1617	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	9	84	9	-4	multi-exon	FALSE	canonical	3	512	junction_1	10.5	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTACCCAGTATGTGTT	NA	False	NA	1	True	NA	NA	NA	16735442	16748415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_16735730_16737891_16737998_16747191
ENSMUSG00000025940.7_1	chr1	+	1263	3	FSM	ENSMUSG00000025940.7	ENSMUST00000177501.2	1636	3	18	355	-11	-355	multi-exon	FALSE	canonical	3	53	junction_1	240	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTCTGGTATATGTATG	NA	False	NA	29	True	AATAAA	-40	NA	16735448	16748064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_16735730_16737888_16737998_16747191
ENSMUSG00000025949.17_10	chr1	+	1633	8	NIC	ENSMUSG00000025949.17	novel	1790	10	NA	NA	0	-25	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	36.7101164947923	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAAAGAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	65225871	65248533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65247941
ENSMUSG00000025949.17_15	chr1	+	9481	42	FSM	ENSMUSG00000025949.17	ENSMUST00000097707.5	6641	42	-57	-2783	0	-1900	multi-exon	FALSE	canonical	3	51	junction_11	15.9367802178507	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTACTAGATTTCAGATC	NA	False	NA	20	True	AATAAA	-30	NA	65225851	65315954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092_65255232_65258912_65259071_65261428_65261541_65262663_65262812_65263320_65263489_65269952_65270013_65272888_65273019_65273412_65273594_65274168_65274244_65277593_65277702_65283554_65283696_65284868_65284996_65285220_65286378_65289344_65289446_65290763_65290836_65291570_65291743_65292510_65292690_65294200_65294315_65294680_65294790_65295097_65295253_65295706_65295798_65297067_65297129_65297941_65298080_65299157_65299279_65302038_65302135_65303505_65303590_65304407_65304506_65304920_65305086_65306984_65307045_65307856_65308034_65309031_65309136_65310426_65310556_65311605_65311868_65312191_65312267_65312801
ENSMUSG00000025949.17_17	chr1	+	9428	42	NIC	ENSMUSG00000025949.17	novel	6641	42	NA	NA	0	-1898	combination_of_known_junctions	FALSE	canonical	3	51	junction_11	16.2957131693522	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACTAGATTTCAGATCTC	NA	False	NA	22	True	AATAAA	-32	NA	65225851	65315956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092_65255232_65258912_65259071_65261428_65261541_65262663_65262812_65263320_65263489_65269952_65270013_65272888_65273019_65273412_65273594_65274168_65274244_65277593_65277702_65283554_65283696_65284868_65284996_65285220_65286378_65289344_65289446_65290763_65290836_65291570_65291743_65292510_65292690_65294200_65294315_65294680_65294790_65295097_65295253_65295706_65295798_65297067_65297129_65297941_65298080_65299157_65299279_65302038_65302135_65303505_65303590_65304407_65304506_65304920_65305086_65306984_65307045_65307856_65308034_65309031_65309136_65310426_65310556_65311605_65311868_65312191_65312267_65312801
ENSMUSG00000025949.17_2	chr1	+	4699	7	FSM	ENSMUSG00000025949.17	ENSMUST00000185317.7	1044	7	13	-3668	0	-25	multi-exon	FALSE	canonical	3	56	junction_1	20.9257948209593	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAAAGAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	65225854	65248533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747
ENSMUSG00000025949.17_3	chr1	+	4746	7	ISM	ENSMUSG00000025949.17	ENSMUST00000188799.7	4083	11	11	16743	0	-25	5prime_fragment	FALSE	canonical	3	73	junction_1	15.5536705207056	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAAAGAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	65225862	65248533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747
ENSMUSG00000025949.17_45	chr1	+	6369	23	ISM	ENSMUSG00000025949.17	ENSMUST00000081154.14	11237	42	59864	1900	49806	-1900	3prime_fragment	FALSE	canonical	3	62	junction_10	12.0439964812212	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTACTAGATTTCAGATC	NA	False	NA	20	True	AATAAA	-30	NA	65285724	65315954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_65286378_65289344_65289446_65290763_65290836_65291570_65291743_65292510_65292690_65294200_65294315_65294680_65294790_65295097_65295253_65295706_65295798_65297067_65297129_65297941_65298080_65299157_65299279_65302038_65302135_65303505_65303590_65304407_65304506_65304920_65305086_65306984_65307045_65307856_65308034_65309031_65309136_65310426_65310556_65311605_65311868_65312191_65312267_65312801
ENSMUSG00000025949.17_49	chr1	+	4818	15	ISM	ENSMUSG00000025949.17	ENSMUST00000081154.14	11237	42	69846	1896	59788	-1896	3prime_fragment	FALSE	canonical	3	62	junction_2	12.7471485406881	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGATTTCAGATCTCTT	NA	False	NA	24	True	AATAAA	-34	NA	65295706	65315958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_65295798_65297067_65297129_65297941_65298080_65299157_65299279_65302038_65302135_65303505_65303590_65304407_65304506_65304920_65305086_65306984_65307045_65307856_65308034_65309031_65309136_65310426_65310556_65311605_65311868_65312191_65312267_65312801
ENSMUSG00000025949.17_55	chr1	+	4048	8	ISM	ENSMUSG00000025949.17	ENSMUST00000081154.14	11237	42	79137	1900	69079	-1900	3prime_fragment	FALSE	canonical	3	77	junction_1	9.81044840765108	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTACTAGATTTCAGATC	NA	False	NA	20	True	AATAAA	-30	NA	65304997	65315954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_65305086_65306984_65307045_65307856_65308034_65309031_65309136_65310426_65310556_65311605_65311868_65312191_65312267_65312801
ENSMUSG00000025949.17_59	chr1	+	3438	3	ISM	ENSMUSG00000025949.17	ENSMUST00000081154.14	11237	42	85797	1900	75739	-1900	3prime_fragment	FALSE	canonical	3	102	junction_2	2.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTACTAGATTTCAGATC	202	False	NA	20	True	AATAAA	-30	NA	65311657	65315954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_65311868_65312191_65312267_65312801
ENSMUSG00000025949.17_60	chr1	+	2361	1	ISM	ENSMUSG00000025949.17	ENSMUST00000081154.14	11237	42	87735	1898	77677	-1898	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACTAGATTTCAGATCTC	2140	False	NA	22	True	AATAAA	-32	NA	65313595	65315956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_65313600_65316000
ENSMUSG00000025949.17_7	chr1	+	9317	41	NIC	ENSMUSG00000025949.17	novel	11237	42	NA	NA	0	-1896	combination_of_known_junctions	FALSE	canonical	3	18	junction_11	18.0099972237644	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGATTTCAGATCTCTT	NA	False	NA	24	True	AATAAA	-34	NA	65225851	65315958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092_65255232_65258912_65259071_65261428_65261541_65262663_65262812_65269952_65270013_65272888_65273019_65273412_65273594_65274168_65274244_65277593_65277702_65283554_65283696_65284868_65284996_65285220_65286378_65289344_65289446_65290763_65290836_65291570_65291743_65292510_65292690_65294200_65294315_65294680_65294790_65295097_65295253_65295706_65295798_65297067_65297129_65297941_65298080_65299157_65299279_65302038_65302135_65303505_65303590_65304407_65304506_65304920_65305086_65306984_65307045_65307856_65308034_65309031_65309136_65310426_65310556_65311605_65311868_65312191_65312267_65312801
ENSMUSG00000025950.17_0	chr1	-	2179	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	110	13	110	-11	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	1097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTCTTTGAAGTGTTTA	NA	False	NA	-19	True	ATTAAA	-15	NA	65218230	65197787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
ENSMUSG00000025950.17_7	chr1	-	2268	9	FSM	ENSMUSG00000025950.17	ENSMUST00000169032.8	2283	9	4	11	4	-11	multi-exon	FALSE	canonical	3	72	junction_8	288.761904516506	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTCTTTGAAGTGTTTA	NA	False	NA	-19	True	ATTAAA	-15	NA	65225634	65197787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225463
ENSMUSG00000025952.16_1	chr1	-	785	3	FSM	ENSMUSG00000025952.16	ENSMUST00000027089.15	783	3	-11	9	-11	-3	multi-exon	FALSE	canonical	3	19	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCTGACTTCTGTTATT	677	False	NA	-3	True	AATAAA	-23	NA	65112859	65110692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_65111031_65112320_65112564_65112655
ENSMUSG00000025956.11_0	chr1	-	1999	4	FSM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	20	11	20	-4	multi-exon	FALSE	canonical	3	40	junction_3	6.34209919681348	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAGAGTACCTGTCAGT	NA	False	NA	-11	True	ATTAAA	-9	NA	64656381	64645642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_64647297_64654256_64654369_64655431_64655604_64656320
ENSMUSG00000025956.11_1	chr1	-	2056	3	FSM	ENSMUSG00000025956.11	ENSMUST00000053469.2	2666	3	2	608	2	-608	multi-exon	FALSE	canonical	3	51	junction_1	2	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAAACTTGTAGGTTAGA	NA	False	NA	0	True	AATAAA	-24	NA	64656325	64646246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_64647297_64654256_64654369_64655431
ENSMUSG00000025956.11_3	chr1	-	1530	1	ISM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	9222	18	7611	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTGGATATAAGAGTACC	NA	False	NA	-18	True	ATTAAA	-2	NA	64647179	64645649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_64645600_64647200
ENSMUSG00000025956.11_4	chr1	-	1673	2	ISM	ENSMUSG00000025956.11	ENSMUST00000162806.8	487	3	517	-1474	517	-2	3prime_fragment	FALSE	canonical	3	51	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTACCTGTCAGTGT	NA	False	NA	-9	True	ATTAAA	-11	NA	64654273	64645640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_64647297_64654256
ENSMUSG00000025958.15_0	chr1	+	6517	7	FSM	ENSMUSG00000025958.15	ENSMUST00000171164.8	1287	7	56	-5286	-6	1600	multi-exon	FALSE	canonical	2	7	junction_1	32.4572368235841	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTGTCTTAAAGTGCT	NA	False	NA	9	True	ATTAAA	-21	NA	64572011	64642016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_64572180_64597661_64597809_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
ENSMUSG00000025958.15_1	chr1	+	6812	9	FSM	ENSMUSG00000025958.15	ENSMUST00000190348.2	1260	9	-67	-5485	-5	-1586	multi-exon	FALSE	canonical	3	25	junction_4	27.9773904251272	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTCTGTAAAGTCTCT	NA	False	NA	1	True	CATAAA	-10	NA	64571985	64642121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_64572180_64590007_64590130_64597661_64597809_64598885_64598928_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
ENSMUSG00000025958.15_2	chr1	+	6656	8	FSM	ENSMUSG00000025958.15	ENSMUST00000087366.11	8364	8	16	1692	3	1599	multi-exon	FALSE	canonical	3	58	junction_3	12.7375389286621	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATATTGTCTTAAAGTGC	NA	False	NA	8	True	ATTAAA	-20	NA	64571993	64642015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_64572180_64590007_64590130_64597661_64597809_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
ENSMUSG00000025958.15_21	chr1	+	1758	9	NIC	ENSMUSG00000025958.15	novel	1420	10	NA	NA	15	238	combination_of_known_junctions	FALSE	canonical	1	2	junction_6	37.3053280376946	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATTAGTGTGGTGTTGGG	NA	False	NA	NA	False	ATTAAA	-18	NA	64572032	64637092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_64572180_64590007_64590130_64597661_64597809_64605375_64605477_64609292_64609436_64613231_64613415_64614354_64614419_64615337_64615489_64636392
ENSMUSG00000025958.15_27	chr1	+	3621	1	ISM	ENSMUSG00000025958.15	ENSMUST00000087366.11	8364	8	66522	1587	22953	-1587	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACTCTGTAAAGTCTC	NA	False	NA	0	True	CATAAA	-9	NA	64638499	64642120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_64638500_64642100
ENSMUSG00000025959.14_0	chr1	-	2884	1	ISM	ENSMUSG00000025959.14	ENSMUST00000114086.8	7662	4	89147	14	89138	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCCTTGGAATGGTTCA	7478	False	NA	-19	True	AATAAA	-13	NA	64071503	64068619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_64068600_64071500
ENSMUSG00000025959.14_2	chr1	-	4201	4	FSM	ENSMUSG00000025959.14	ENSMUST00000114086.8	7662	4	30	3431	21	-3431	multi-exon	FALSE	canonical	3	7	junction_1	3.85861230093008	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAGAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	64160620	64072036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_64074924_64081472_64081597_64117865_64118494_64160058
ENSMUSG00000025959.14_3	chr1	-	1672	1	ISM	ENSMUSG00000025959.14	ENSMUST00000114086.8	7662	4	86944	3429	86935	-3429	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGGAAAAA	5275	False	NA	NA	False	NA	NA	NA	64073706	64072034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_64072000_64073700
ENSMUSG00000025959.14_4	chr1	-	3963	5	NIC	ENSMUSG00000025959.14	novel	7662	4	NA	NA	-3	-3431	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	5.02493781056044	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAGAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	64161444	64072036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_64074924_64081472_64081597_64117865_64118494_64160058_64160299_64161360
ENSMUSG00000025959.14_6	chr1	-	3722	4	NIC	ENSMUSG00000025959.14	novel	7662	4	NA	NA	-2	-3431	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.24264068711928	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAGAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	64161443	64072036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_64074924_64081472_64081597_64117865_64118494_64161360
ENSMUSG00000025962.16_0	chr1	+	2266	12	FSM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	29	2191	0	-1	multi-exon	FALSE	canonical	3	308	junction_4	54.5943720043143	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCGTGGATCAGCTGGCT	NA	False	NA	4	True	AATAAA	-15	NA	63769801	63791623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
ENSMUSG00000025962.16_29	chr1	+	2219	11	ISM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	784	2191	755	-1	3prime_fragment	FALSE	canonical	3	308	junction_3	51.2485121735256	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCGTGGATCAGCTGGCT	NA	False	NA	4	True	AATAAA	-15	NA	63770556	63791623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
ENSMUSG00000025964.16_1	chr1	+	3039	26	FSM	ENSMUSG00000025964.16	ENSMUST00000087374.10	6426	26	6	3381	6	-17	multi-exon	TRUE	canonical	2	14	junction_24	11.498591218058	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAACAACAACAACTT	NA	False	NA	-7	True	NA	NA	NA	63485059	63632054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_63485572_63486886_63487108_63516837_63516915_63554735_63554800_63567916_63568000_63569393_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007_63607128_63610068_63610238_63612045_63612158_63624523_63624615_63631766
ENSMUSG00000025964.16_2	chr1	+	2944	25	FSM	ENSMUSG00000025964.16	ENSMUST00000114103.8	2655	25	-306	17	-5	-17	multi-exon	FALSE	canonical	2	7	junction_24	11.7541363877667	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAACAACAACAACTT	NA	False	NA	-7	True	NA	NA	NA	63485063	63632054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_63485572_63486886_63487108_63516837_63516915_63554735_63554800_63567916_63568000_63569393_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007_63607128_63610068_63610238_63612045_63612158_63631766
ENSMUSG00000025964.16_23	chr1	+	2551	1	NIC	ENSMUSG00000025964.16	novel	6426	26	NA	NA	6391	1052	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTCAAATGCTGGAAGC	NA	False	NA	NA	False	AATAAA	-10	NA	63630572	63633123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_63630600_63633100
ENSMUSG00000025964.16_3	chr1	+	4933	22	FSM	ENSMUSG00000025964.16	ENSMUST00000114101.8	3496	22	-6	-1431	-6	1431	multi-exon	FALSE	canonical	2	25	junction_12	9.21868358195068	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAGACTAGGTGGAGTT	NA	False	NA	NA	False	NA	NA	NA	63485062	63609684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_63485572_63486886_63487108_63516837_63516915_63554735_63554800_63567916_63568000_63569393_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007
ENSMUSG00000025964.16_4	chr1	+	3020	26	FSM	ENSMUSG00000025964.16	ENSMUST00000114107.3	6110	26	-291	3381	10	-17	multi-exon	FALSE	canonical	2	8	junction_25	13.3899066464259	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAACAACAACAACTT	NA	False	NA	-7	True	NA	NA	NA	63485078	63632054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_63485572_63486886_63487108_63516837_63516915_63554735_63554800_63567916_63568000_63569393_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007_63607128_63610068_63610238_63612045_63612158_63620295_63620387_63631766
ENSMUSG00000025964.16_6	chr1	+	2816	24	FSM	ENSMUSG00000025964.16	ENSMUST00000182642.8	2889	24	42	31	-2	-31	multi-exon	FALSE	canonical	2	25	junction_12	8.88489723439638	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTAAGAAAAGTAAATATAC	NA	False	NA	NA	False	ATTAAA	-24	NA	63485091	63612345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_63485572_63486886_63487108_63516837_63516915_63554735_63554800_63567916_63568000_63569393_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007_63607128_63610068_63610238_63612045
ENSMUSG00000025967.17_0	chr1	+	795	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	306	838	0	-8	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATAACCCTTGGCTCTT	NA	False	NA	22	True	AATAAA	-7	NA	63216289	63218807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ENSMUSG00000025967.17_12	chr1	+	485	4	ISM	ENSMUSG00000025967.17	ENSMUST00000188524.2	681	5	1335	8	1242	-8	3prime_fragment	FALSE	canonical	3	3124	junction_3	191.521974370219	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATAACCCTTGGCTCTT	NA	False	NA	22	True	AATAAA	-7	NA	63217623	63218807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_63217725_63217990_63218058_63218406_63218533_63218616
ENSMUSG00000025967.17_17	chr1	+	167	1	ISM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	2657	838	2259	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATAACCCTTGGCTCTT	NA	False	NA	22	True	AATAAA	-7	NA	63218640	63218807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_63218600_63218800
ENSMUSG00000025967.17_8	chr1	+	260	2	ISM	ENSMUSG00000025967.17	ENSMUST00000188524.2	681	5	2175	8	2082	-8	3prime_fragment	FALSE	canonical	3	3124	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATAACCCTTGGCTCTT	NA	False	NA	22	True	AATAAA	-7	NA	63218463	63218807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_63218533_63218616
ENSMUSG00000025968.17_0	chr1	-	2670	19	FSM	ENSMUSG00000025968.17	ENSMUST00000168099.9	2590	19	52	-132	10	1	multi-exon	FALSE	canonical	3	212	junction_18	163.056757519704	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACACTGATATTAAAGT	NA	False	NA	NA	False	AATAAA	-24	NA	63215839	63182761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
ENSMUSG00000025968.17_2	chr1	-	2620	20	NIC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	6	1	combination_of_known_junctions	FALSE	canonical	3	163	junction_19	199.298478811329	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACACTGATATTAAAGT	NA	False	NA	NA	False	AATAAA	-24	NA	63215843	63182761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215744
ENSMUSG00000025968.17_3	chr1	-	2775	20	NIC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	9	1	combination_of_known_junctions	FALSE	canonical	3	123	junction_19	206.17340683078	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACACTGATATTAAAGT	NA	False	NA	NA	False	AATAAA	-24	NA	63215840	63182761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215586
ENSMUSG00000025968.17_4	chr1	-	2522	19	FSM	ENSMUSG00000025968.17	ENSMUST00000027111.15	2661	19	132	7	0	1	multi-exon	FALSE	canonical	3	367	junction_18	130.918608680223	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACACTGATATTAAAGT	NA	False	NA	NA	False	AATAAA	-24	NA	63215849	63182761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
ENSMUSG00000025969.16_0	chr1	+	4254	16	FSM	ENSMUSG00000025969.16	ENSMUST00000114155.8	6534	16	-335	2615	82	-282	multi-exon	FALSE	canonical	2	3	junction_2	5.28898225874632	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCCTTATCTAGCTCTG	4090	False	NA	NA	False	AATATA	-44	NA	62742525	62835858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_62743437_62758088_62758267_62777447_62777630_62783333_62783565_62784516_62784673_62786316_62786487_62788291_62788448_62799933_62800079_62801849_62802200_62804008_62804154_62808158_62808276_62810863_62811005_62822452_62822716_62824203_62824301_62825439_62825461_62834867
ENSMUSG00000025969.16_3	chr1	+	3280	15	ISM	ENSMUSG00000025969.16	ENSMUST00000027112.13	4216	16	-310	10638	107	-10638	5prime_fragment	FALSE	canonical	2	3	junction_2	4.95695759225642	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTTTTCTCTTTCCAT	4115	False	NA	NA	False	AAAAAG	-15	NA	62742550	62825502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_62743437_62758088_62758267_62777447_62777630_62783333_62783565_62784516_62784673_62786316_62786487_62788291_62788448_62799933_62800079_62801849_62802200_62804008_62804154_62808158_62808276_62810863_62811005_62822452_62822716_62824203_62824301_62825439
ENSMUSG00000025969.16_4	chr1	+	2090	13	ISM	ENSMUSG00000025969.16	ENSMUST00000027112.13	4216	16	34713	10638	34713	-10638	internal_fragment	FALSE	canonical	3	7	junction_6	4.29065522061867	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTTTTCTCTTTCCAT	6641	False	NA	NA	False	AAAAAG	-15	NA	62777573	62825502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_62777630_62783333_62783565_62784516_62784673_62786316_62786487_62788291_62788448_62799933_62800079_62801849_62802200_62804008_62804154_62808158_62808276_62810863_62811005_62822452_62822716_62824203_62824301_62825439
ENSMUSG00000025971.7_0	chr1	+	1064	5	FSM	ENSMUSG00000025971.7	ENSMUST00000027114.6	3540	5	427	2049	-4	-2049	multi-exon	FALSE	canonical	3	301	junction_4	18.5926732881531	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTGCTAGTGTTCTTTAA	NA	False	NA	9	True	AATAAA	-12	NA	57445913	57455063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_57446382_57449070_57449143_57450881_57451009_57452398_57452547_57454814
ENSMUSG00000025977.16_1	chr1	-	5234	11	NIC	ENSMUSG00000025977.16	novel	882	10	NA	NA	-70	3993	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	8.86848352312841	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAAATTCTCTAGCTTTG	NA	False	NA	NA	False	AATAAA	-21	NA	55402548	55283823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_55288124_55339245_55339345_55343656_55343786_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55402457
ENSMUSG00000025977.16_13	chr1	-	1057	10	FSM	ENSMUSG00000025977.16	ENSMUST00000087585.10	882	10	-68	-107	-68	107	multi-exon	FALSE	canonical	3	13	junction_5	6.71831842570265	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACAATAATTTCTGTTAA	NA	False	NA	NA	False	AATAAA	-8	NA	55402546	55339120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_55339345_55343656_55343786_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55402457
ENSMUSG00000025977.16_4	chr1	-	2681	11	NIC	ENSMUSG00000025977.16	novel	2635	10	NA	NA	-11	-4	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	8.66256313108309	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTGAGTTATGGGTGGA	NA	False	NA	NA	False	AATAAA	-17	NA	55402489	55308018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_55309825_55339245_55339345_55343656_55343786_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55402457
ENSMUSG00000025979.14_0	chr1	+	1961	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	58	821	2	140	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	337	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55170447	55193237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUSG00000025980.15_1	chr1	-	2229	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	188	6	188	-6	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	8733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTCTGGTTGTGTTAC	4643	False	NA	-12	True	AATAAA	-10	NA	55126995	55116999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
ENSMUSG00000025980.15_3	chr1	-	2264	12	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	-57	-6	combination_of_known_junctions	FALSE	canonical	2	335	junction_11	1793.34097000842	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTCTGGTTGTGTTAC	4398	False	NA	-12	True	AATAAA	-10	NA	55127240	55116999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
ENSMUSG00000025981.14_0	chr1	+	1656	5	FSM	ENSMUSG00000025981.14	ENSMUST00000027125.7	1733	5	69	8	-30	-8	multi-exon	FALSE	canonical	3	135	junction_4	22.7486263321547	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGACCTTGGTTATTT	3628	False	NA	14	True	AATAAA	-20	NA	55091997	55111853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_55092150_55100433_55100584_55103339_55103533_55106655_55106758_55110794
ENSMUSG00000025981.14_1	chr1	+	4794	4	NIC	ENSMUSG00000025981.14	novel	1733	5	NA	NA	47	-15	intron_retention	FALSE	canonical	3	135	junction_3	25.8499946271217	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGTATAGTGACCTTG	3606	False	NA	7	True	AATAAA	-13	NA	55091975	55111846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_55092150_55100433_55100584_55103339_55106758_55110794
ENSMUSG00000025982.14_2	chr1	-	4243	25	FSM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	88	1864	1	-1860	multi-exon	TRUE	canonical	2	1032	junction_2	157.733865172392	2558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCTAATTTGTGTGTG	NA	False	NA	-10	True	AATAAA	-12	NA	55066552	55026191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
ENSMUSG00000025982.14_25	chr1	-	6056	24	NIC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	1	-1860	intron_retention	FALSE	canonical	2	1032	junction_2	150.157661314426	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCTAATTTGTGTGTG	NA	False	NA	-10	True	AATAAA	-12	NA	55066552	55026191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55055650_55055937_55056043_55058392_55058560_55066497
ENSMUSG00000025983.12_1	chr1	+	3810	7	FSM	ENSMUSG00000025983.12	ENSMUST00000161988.2	1204	7	96	-2702	57	2702	multi-exon	FALSE	canonical	2	2	junction_2	2.3392781412697	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAAGTGCTGTGTGGCCC	NA	False	NA	NA	False	AATAAA	-8	NA	54289937	54320822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_54290045_54299082_54299247_54302602_54302824_54302932_54303112_54311636_54311706_54316812_54316930_54317869
ENSMUSG00000025983.12_3	chr1	+	2537	19	NIC	ENSMUSG00000025983.12	novel	3696	31	NA	NA	31008	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_3	1.04822012578407	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAGTAGACTCCTCTC	NA	False	NA	NA	False	AATAAA	-10	NA	54320888	54407886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_54320933_54324693_54324787_54327993_54328102_54329860_54329986_54339464_54339643_54340158_54340228_54344022_54344137_54392154_54392284_54393777_54393948_54394845_54394940_54395822_54395993_54400150_54400278_54403576_54403772_54404053_54404123_54404206_54404369_54405291_54405379_54406917_54407018_54407116_54407193_54407459
ENSMUSG00000025986.7_1	chr1	-	4971	10	FSM	ENSMUSG00000025986.7	ENSMUST00000027131.6	5498	10	521	6	521	-6	multi-exon	FALSE	canonical	3	237	junction_4	21.0736509753792	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGTGGTGTGTTTTC	449	False	NA	NA	False	AATAAA	-10	NA	46892685	46846709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286_46875312_46892630
ENSMUSG00000025986.7_2	chr1	-	4691	9	ISM	ENSMUSG00000025986.7	ENSMUST00000027131.6	5498	10	18120	6	-27	-6	3prime_fragment	TRUE	canonical	3	237	junction_4	22.155346420221	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGTGGTGTGTTTTC	NA	False	NA	NA	False	AATAAA	-10	NA	46875086	46846709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286
ENSMUSG00000025986.7_4	chr1	-	1691	1	ISM	ENSMUSG00000025986.7	ENSMUST00000027131.6	5498	10	44812	0	26665	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTGTGTTTTCATTGTC	5671	False	NA	NA	False	AATAAA	-16	NA	46848394	46846703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_46846700_46848400
ENSMUSG00000025991.9_0	chr1	+	2278	13	ISM	ENSMUSG00000025991.9	ENSMUST00000027144.8	5555	38	81478	1	81478	-1	3prime_fragment	FALSE	canonical	0	0	junction_2	3.27448045073142	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGCAGTTGAATTCTT	NA	False	NA	NA	False	AATAAA	-13	NA	67243662	67270417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_67243862_67244290_67244359_67245914_67245991_67248754_67248833_67251561_67251670_67253175_67253266_67254568_67254740_67257010_67257086_67259661_67259761_67266282_67266343_67267394_67267508_67268547_67268678_67269406
ENSMUSG00000025993.11_0	chr1	-	3257	8	FSM	ENSMUSG00000025993.11	ENSMUST00000027137.11	3370	8	0	113	0	-113	multi-exon	FALSE	canonical	0	0	junction_6	1.82946406783796	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTTTGTAGAATCTTC	NA	False	NA	NA	False	CATAAA	-13	NA	45964742	45947340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_45948880_45950051_45950691_45951395_45951642_45957468_45957596_45958044_45958161_45960315_45960476_45963876_45963945_45964380
ENSMUSG00000025995.17_0	chr1	+	2604	21	FSM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	340	9	-1	6	multi-exon	FALSE	canonical	3	530	junction_5	51.2145243070752	990	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGACAAAATATTAAAGCCT	NA	False	NA	-1	True	TATAAA	-15	NA	45834665	45862770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
ENSMUSG00000026000.17_0	chr1	-	1373	10	NIC	ENSMUSG00000026000.17	novel	4270	10	NA	NA	11	-2	combination_of_known_junctions	FALSE	canonical	3	85	junction_9	146.548774167089	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGTCGAGTTTTTATTT	NA	False	NA	-7	True	AATGAA	-14	NA	67078013	67042535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077960
ENSMUSG00000026000.17_2	chr1	-	1570	9	FSM	ENSMUSG00000026000.17	ENSMUST00000113979.10	4461	9	31	2860	-7	-2	multi-exon	FALSE	canonical	3	327	junction_5	113.959902487673	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGTCGAGTTTTTATTT	NA	False	NA	-7	True	AATGAA	-14	NA	67078000	67042535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653
ENSMUSG00000026000.17_4	chr1	-	1398	10	FSM	ENSMUSG00000026000.17	ENSMUST00000027149.12	4270	10	12	2860	12	-2	multi-exon	FALSE	canonical	3	56	junction_9	152.892845556037	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGTCGAGTTTTTATTT	NA	False	NA	-7	True	AATGAA	-14	NA	67078012	67042535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077934
ENSMUSG00000026000.17_6	chr1	-	225	2	ISM	ENSMUSG00000026000.17	ENSMUST00000119559.8	1385	10	34451	3	16682	-3	3prime_fragment	FALSE	canonical	3	697	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGGTCGAGTTTTTATT	NA	False	NA	-8	True	AATGAA	-13	NA	67043542	67042536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_67042717_67043497
ENSMUSG00000026003.6_0	chr1	-	1508	11	FSM	ENSMUSG00000026003.6	ENSMUST00000027153.6	1916	11	-32	440	-32	-440	multi-exon	FALSE	canonical	3	107	junction_4	12.5315601582564	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACACAGGGAGAGAGAAATT	NA	False	NA	-15	True	AATAAA	-18	NA	66902468	66870437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_66870687_66876120_66876208_66877437_66877566_66880780_66880895_66882239_66882342_66884326_66884492_66887558_66887626_66892285_66892451_66893782_66893921_66896557_66896714_66902331
ENSMUSG00000026004.16_11	chr1	-	5057	2	FSM	ENSMUSG00000026004.16	ENSMUST00000189846.2	1600	2	-31	-3426	-15	3426	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCAGTCTCTTGGTGTTA	6609	False	NA	NA	False	AGTAAA	-19	NA	66856736	66836474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_66841328_66856532
ENSMUSG00000026004.16_2	chr1	-	1113	7	NIC	ENSMUSG00000026004.16	novel	2342	8	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	4.42216638714053	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATGCAAATCCTTAAT	6628	False	NA	NA	False	AATAAA	-13	NA	66856717	66774700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_66774904_66777209_66777373_66801206_66801412_66812064_66812187_66812580_66812674_66817125_66817268_66856532
ENSMUSG00000026004.16_5	chr1	-	2283	6	NIC	ENSMUSG00000026004.16	novel	2342	8	NA	NA	2	15364	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	5.31413210223457	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAAATGTCAAGGTGA	6626	False	NA	NA	False	ATTAAA	-14	NA	66856719	66800792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_66801412_66812064_66812187_66812580_66812674_66817125_66817268_66840207_66841328_66856532
ENSMUSG00000026005.16_0	chr1	+	2349	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	38	305	-38	-305	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTATAAGCAAAAGTTT	NA	False	NA	5	True	NA	NA	NA	66740027	66758659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUSG00000026005.16_4	chr1	+	2336	6	NIC	ENSMUSG00000026005.16	novel	2713	7	NA	NA	-36	-305	combination_of_known_splicesites	FALSE	canonical	3	56	junction_1	305.506530208439	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTATAAGCAAAAGTTT	NA	False	NA	5	True	NA	NA	NA	66740029	66758659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_66740177_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUSG00000026014.16_1	chr1	-	3597	1	ISM	ENSMUSG00000026014.16	ENSMUST00000140485.8	10024	14	79736	1155	9238	-211	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTAAACAAAGGATTTCAA	NA	False	NA	NA	False	AATAAA	-24	NA	60526202	60522605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_60522600_60526200
ENSMUSG00000026014.16_10	chr1	-	4528	13	ISM	ENSMUSG00000026014.16	ENSMUST00000140485.8	10024	14	68	8644	54	-260	5prime_fragment	FALSE	canonical	3	25	junction_2	4.25163367294137	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTAAAGAATGCACCCCCTT	NA	False	NA	NA	False	AGTAAA	-6	NA	60605870	60530094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_60532840_60534573_60534695_60535383_60535483_60537582_60537694_60538638_60538783_60539713_60539780_60540914_60541037_60541983_60542144_60542676_60542755_60564750_60565260_60566542_60566649_60572445_60572566_60605723
ENSMUSG00000026014.16_11	chr1	-	1397	6	ISM	ENSMUSG00000026014.16	ENSMUST00000140485.8	10024	14	87	20237	73	-926	5prime_fragment	FALSE	canonical	3	28	junction_4	2.93938769133981	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGTTTACATTTTCAT	NA	False	NA	NA	False	AATAAA	-20	NA	60605851	60541687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_60542144_60542676_60542755_60564750_60565260_60566542_60566649_60572445_60572566_60605723
ENSMUSG00000026014.16_13	chr1	-	3741	10	ISM	ENSMUSG00000026014.16	ENSMUST00000140485.8	10024	14	41096	8641	-3392	-257	internal_fragment	FALSE	canonical	3	25	junction_2	4.30618275001691	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAATGCACCCCCTTACC	2252	False	NA	NA	False	AGTAAA	-9	NA	60564842	60530091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_60532840_60534573_60534695_60535383_60535483_60537582_60537694_60538638_60538783_60539713_60539780_60540914_60541037_60541983_60542144_60542676_60542755_60564750
ENSMUSG00000026014.16_2	chr1	-	2159	14	NIC	ENSMUSG00000026014.16	novel	2241	16	NA	NA	-15	-6	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	4.5573271518765	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACCTGGTTTTAAAGC	NA	False	NA	-11	True	NA	NA	NA	60605953	60522349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_60522500_60532696_60532840_60534573_60534695_60535383_60535483_60537582_60537694_60538638_60538783_60539713_60539780_60540914_60541037_60541983_60542144_60542676_60542755_60564750_60565260_60566542_60566649_60572445_60572566_60605723
ENSMUSG00000026014.16_3	chr1	-	8150	14	FSM	ENSMUSG00000026014.16	ENSMUST00000140485.8	10024	14	-51	1925	-51	-981	multi-exon	FALSE	canonical	3	5	junction_1	7.94731170356426	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACTTAATACCAAAACCT	NA	False	NA	NA	False	ATTAAA	-7	NA	60605989	60523375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_60529481_60532696_60532840_60534573_60534695_60535383_60535483_60537582_60537694_60538638_60538783_60539713_60539780_60540914_60541037_60541983_60542144_60542676_60542755_60564750_60565260_60566542_60566649_60572445_60572566_60605723
ENSMUSG00000026014.16_4	chr1	-	1843	13	NIC	ENSMUSG00000026014.16	novel	2241	16	NA	NA	-11029	-6	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	4.4992283288977	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACCTGGTTTTAAAGC	NA	False	NA	-11	True	NA	NA	NA	60572479	60522349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_60522500_60532696_60532840_60534573_60534695_60535383_60535483_60537582_60537694_60538638_60538783_60539713_60539780_60540914_60541037_60541983_60542144_60542676_60542755_60564750_60565260_60566542_60566649_60572445
ENSMUSG00000026017.14_0	chr1	+	5590	17	NIC	ENSMUSG00000026017.14	novel	2763	18	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3.04073901379254	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATGTGTTAGTTTTTGAA	NA	False	NA	NA	False	ATTAAA	-16	NA	60137421	60193108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_60137467_60141785_60141944_60144469_60144587_60147241_60147360_60148485_60148609_60164009_60164071_60165078_60165194_60167147_60167233_60171002_60171193_60175422_60175544_60178358_60178503_60180493_60180728_60183152_60183316_60185267_60185332_60186526_60186640_60186991_60187362_60189739
ENSMUSG00000026017.14_3	chr1	+	1973	1	ISM	ENSMUSG00000026017.14	ENSMUST00000187978.7	5463	15	46636	1	10532	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTAGTTTTTGAAAAT	9552	False	NA	NA	False	ATTAAA	-19	NA	60191138	60193111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_60191100_60193100
ENSMUSG00000026017.14_4	chr1	+	5472	16	NIC	ENSMUSG00000026017.14	novel	2763	18	NA	NA	-21	-1	combination_of_known_junctions	FALSE	canonical	2	3	junction_9	2.30554886210541	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTAGTTTTTGAAAAT	NA	False	NA	NA	False	ATTAAA	-19	NA	60137384	60193111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_60137467_60144469_60144587_60147241_60147360_60148485_60148609_60164009_60164071_60165078_60165194_60167147_60167233_60171002_60171193_60175422_60175544_60178358_60178503_60180493_60180728_60183152_60183316_60185267_60185332_60186526_60186640_60186991_60187362_60189739
ENSMUSG00000026018.13_3	chr1	-	3464	11	NIC	ENSMUSG00000026018.13	novel	3415	11	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	1.6	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGCAATGTGTTCTCTA	NA	False	NA	NA	False	AATAAA	-14	NA	60082342	60028235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_60030399_60036609_60036871_60042814_60042865_60045392_60045479_60046966_60047066_60049267_60049394_60052978_60053178_60054870_60054995_60061736_60061810_60067226_60067396_60082228
ENSMUSG00000026019.16_2	chr1	-	1505	14	FSM	ENSMUSG00000026019.16	ENSMUST00000117438.8	3251	14	470	1276	-29	-1276	multi-exon	FALSE	canonical	3	160	junction_13	218.809771208535	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCCTTGTTGGGTCTTGT	NA	False	NA	-23	True	AATGAA	-14	NA	60137334	60117302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137301
ENSMUSG00000026019.16_3	chr1	-	1637	13	FSM	ENSMUSG00000026019.16	ENSMUST00000027173.15	10012	13	15	8360	15	-1277	multi-exon	FALSE	canonical	3	863	junction_12	56.5618515923547	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCCTTGTTGGGTCTTG	NA	False	NA	-24	True	AATGAA	-13	NA	60137052	60117303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
ENSMUSG00000026020.10_3	chr1	+	1989	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-20	7538	4	-4	multi-exon	FALSE	canonical	3	1434	junction_3	210.570471503931	1691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGCAGTTTTGTGATCT	NA	False	NA	NA	False	AATAAA	-17	NA	59724147	59750665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
ENSMUSG00000026020.10_4	chr1	+	2101	16	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-9	-4	combination_of_known_junctions	FALSE	canonical	3	171	junction_3	590.490628394916	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGCAGTTTTGTGATCT	NA	False	NA	NA	False	AATAAA	-17	NA	59724152	59750665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
ENSMUSG00000026021.16_0	chr1	-	1169	5	FSM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	36	10	-6	-10	multi-exon	FALSE	canonical	3	3231	junction_1	432.6531520745	1546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACATTACTGAAGCTCC	625	False	NA	-10	True	AATAAA	-11	NA	59709957	59678602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
ENSMUSG00000026024.15_11	chr1	-	5407	31	ISM	ENSMUSG00000026024.15	ENSMUST00000027178.13	6342	34	21830	5	3725	-5	3prime_fragment	FALSE	canonical	2	89	junction_12	16.9856475361472	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAAGCTGTTCTATGACTG	NA	False	NA	-3	True	AATAAA	-15	NA	59254560	59202089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_59203375_59206341_59206439_59206621_59206772_59207309_59207372_59207547_59207594_59208995_59209173_59209595_59209719_59212314_59212473_59214082_59214201_59217690_59217859_59218218_59218353_59219264_59219343_59219707_59219820_59222322_59222488_59222939_59223039_59224371_59224438_59224555_59224759_59225170_59225238_59225614_59225686_59226479_59226609_59226893_59227026_59231047_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260
ENSMUSG00000026024.15_13	chr1	-	3928	24	ISM	ENSMUSG00000026024.15	ENSMUST00000027178.13	6342	34	40982	5	22877	-5	3prime_fragment	TRUE	canonical	2	89	junction_12	18.8528276799845	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAAGCTGTTCTATGACTG	1807	False	NA	-3	True	AATAAA	-15	NA	59235408	59202089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_59203375_59206341_59206439_59206621_59206772_59207309_59207372_59207547_59207594_59208995_59209173_59209595_59209719_59212314_59212473_59214082_59214201_59217690_59217859_59218218_59218353_59219264_59219343_59219707_59219820_59222322_59222488_59222939_59223039_59224371_59224438_59224555_59224759_59225170_59225238_59225614_59225686_59226479_59226609_59226893_59227026_59231047_59231211_59233191_59233258_59235349
ENSMUSG00000026024.15_18	chr1	-	4795	30	ISM	ENSMUSG00000026024.15	ENSMUST00000027178.13	6342	34	26054	6	7949	-6	3prime_fragment	FALSE	canonical	2	89	junction_12	17.2754146820727	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGAAGCTGTTCTATGACT	NA	False	NA	-4	True	AATAAA	-14	NA	59250336	59202090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_59203375_59206341_59206439_59206621_59206772_59207309_59207372_59207547_59207594_59208995_59209173_59209595_59209719_59212314_59212473_59214082_59214201_59217690_59217859_59218218_59218353_59219264_59219343_59219707_59219820_59222322_59222488_59222939_59223039_59224371_59224438_59224555_59224759_59225170_59225238_59225614_59225686_59226479_59226609_59226893_59227026_59231047_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289
ENSMUSG00000026024.15_45	chr1	-	2951	13	FSM	ENSMUSG00000026024.15	ENSMUST00000159166.8	2977	13	10	16	5	-16	multi-exon	FALSE	canonical	2	94	junction_2	9.94847838728226	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	59276380	59230783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
ENSMUSG00000026024.15_7	chr1	-	6306	34	FSM	ENSMUSG00000026024.15	ENSMUST00000027178.13	6342	34	30	6	25	-6	multi-exon	FALSE	canonical	2	89	junction_12	16.3968238094348	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGAAGCTGTTCTATGACT	NA	False	NA	-4	True	AATAAA	-14	NA	59276360	59202090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_59203375_59206341_59206439_59206621_59206772_59207309_59207372_59207547_59207594_59208995_59209173_59209595_59209719_59212314_59212473_59214082_59214201_59217690_59217859_59218218_59218353_59219264_59219343_59219707_59219820_59222322_59222488_59222939_59223039_59224371_59224438_59224555_59224759_59225170_59225238_59225614_59225686_59226479_59226609_59226893_59227026_59231047_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
ENSMUSG00000026027.14_0	chr1	+	2279	12	FSM	ENSMUSG00000026027.14	ENSMUST00000027185.11	2960	12	79	602	79	-9	multi-exon	FALSE	canonical	3	56	junction_7	10.2964328252857	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTAAACATCTCTTTTA	NA	False	NA	6	True	AATAAA	-8	NA	59012759	59034272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031362_59031535_59031809_59031915_59032051_59032297_59032719_59032763_59033451
ENSMUSG00000026027.14_8	chr1	+	2104	11	FSM	ENSMUSG00000026027.14	ENSMUST00000123301.8	2070	11	82	-116	82	-9	multi-exon	FALSE	canonical	1	4	junction_7	23.192455669894	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTAAACATCTCTTTTA	NA	False	NA	6	True	AATAAA	-8	NA	59012762	59034272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031809_59031915_59032051_59032297_59032719_59032763_59033451
ENSMUSG00000026027.14_9	chr1	+	1204	7	FSM	ENSMUSG00000026027.14	ENSMUST00000114296.8	1348	7	142	2	142	-2	multi-exon	FALSE	canonical	3	67	junction_2	9.28110386155057	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTCCAGCTTATGTCGTG	NA	False	NA	NA	False	AATAAA	-15	NA	59012822	59030669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171
ENSMUSG00000026028.13_0	chr1	-	6114	16	FSM	ENSMUSG00000026028.13	ENSMUST00000027186.12	6189	16	67	8	66	-8	multi-exon	FALSE	canonical	3	42	junction_7	7.62335592475883	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTCCTGTGTCTCCTT	1614	False	NA	-8	True	AATAAA	-33	NA	59012522	58939615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58943342_58945864_58945971_58947681_58947949_58949108_58949408_58950794_58950996_58951344_58951422_58954844_58954983_58957930_58958006_58958379_58958511_58960232_58960312_58960838_58961049_58962680_58962798_58965809_58965887_58974904_58975100_58985405_58985695_59012395
ENSMUSG00000026028.13_1	chr1	-	2636	1	ISM	ENSMUSG00000026028.13	ENSMUST00000027186.12	6189	16	70338	8	4120	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTCCTGTGTCTCCTT	NA	False	NA	-8	True	AATAAA	-33	NA	58942251	58939615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_58939600_58942300
ENSMUSG00000026028.13_11	chr1	-	4676	6	ISM	ENSMUSG00000026028.13	ENSMUST00000027186.12	6189	16	61167	9	-5051	-9	3prime_fragment	FALSE	canonical	3	50	junction_5	7.67854152818099	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTGTCCTGTGTCTCCT	NA	False	NA	-9	True	AATAAA	-32	NA	58951422	58939616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_58943342_58945864_58945971_58947681_58947949_58949108_58949408_58950794_58950996_58951344
ENSMUSG00000026028.13_2	chr1	-	6108	16	NNC	ENSMUSG00000026028.13	novel	6189	16	NA	NA	66	-8	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	13.2839083940767	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTCCTGTGTCTCCTT	1614	False	NA	-8	True	AATAAA	-33	NA	59012522	58939615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_58943342_58945864_58945971_58947687_58947949_58949108_58949408_58950794_58950996_58951344_58951422_58954844_58954983_58957930_58958006_58958379_58958511_58960232_58960312_58960838_58961049_58962680_58962798_58965809_58965887_58974904_58975100_58985405_58985695_59012395
ENSMUSG00000026028.13_3	chr1	-	3835	2	FSM	ENSMUSG00000026028.13	ENSMUST00000172685.2	1018	2	398	-3215	398	-8	multi-exon	FALSE	canonical	3	52	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTCCTGTGTCTCCTT	NA	False	NA	-8	True	AATAAA	-33	NA	58945973	58939615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58943342_58945864
ENSMUSG00000026028.13_9	chr1	-	4012	3	ISM	ENSMUSG00000026028.13	ENSMUST00000027186.12	6189	16	64728	8	-1490	-8	3prime_fragment	FALSE	canonical	3	51	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTCCTGTGTCTCCTT	NA	False	NA	-8	True	AATAAA	-33	NA	58947861	58939615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_58943342_58945864_58945971_58947681
ENSMUSG00000026029.15_0	chr1	+	2042	9	FSM	ENSMUSG00000026029.15	ENSMUST00000027189.15	2585	9	45	498	45	-3	multi-exon	FALSE	canonical	2	10	junction_6	4.14578098794425	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGTATGTATGTTTTG	2969	False	NA	0	True	AATATA	-13	NA	58834577	58886164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_58834898_58863073_58863407_58866365_58866472_58868031_58868171_58868254_58868309_58870764_58870827_58872791_58872934_58883502_58884005_58885780
ENSMUSG00000026031.16_3	chr1	+	3763	1	ISM	ENSMUSG00000026031.16	ENSMUST00000114313.8	6572	10	43558	4	24566	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGTCTGATGTCTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	58794276	58798039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_58794300_58798000
ENSMUSG00000026031.16_4	chr1	+	1800	6	ISM	ENSMUSG00000026031.16	ENSMUST00000097722.9	1771	11	-26	20750	-9	-1	5prime_fragment	FALSE	canonical	0	0	junction_1	1.54919333848297	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTTTGTGCATTTGCTT	1277	False	NA	NA	False	NA	NA	NA	58750683	58772385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_58750752_58752729_58752819_58765464_58765892_58768214_58768321_58770310_58770447_58771411
ENSMUSG00000026032.9_0	chr1	+	487	3	FSM	ENSMUSG00000026032.9	ENSMUST00000027193.9	763	3	234	42	234	-42	multi-exon	FALSE	canonical	3	979	junction_1	90.5	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTTGTAACTCTTAAAT	NA	False	NA	10	True	AATAAA	-15	NA	58625776	58635081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_58625830_58630248_58630409_58634807
ENSMUSG00000026034.18_10	chr1	-	1148	9	ISM	ENSMUSG00000026034.18	ENSMUST00000034868.14	1796	13	4354	2	686	-2	3prime_fragment	FALSE	canonical	3	153	junction_8	23.5743504682526	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAGGTCTATAGCTTGG	NA	False	NA	-14	True	AATAAA	-18	NA	58458871	58451160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825
ENSMUSG00000026034.18_12	chr1	-	886	7	ISM	ENSMUSG00000026034.18	ENSMUST00000034868.14	1796	13	6979	9	-322	-9	3prime_fragment	FALSE	canonical	3	188	junction_3	15.7656447871806	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATGTATAAAGGTCTAT	NA	False	NA	-21	True	AATAAA	-11	NA	58456246	58451167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171
ENSMUSG00000026034.18_2	chr1	-	1670	12	FSM	ENSMUSG00000026034.18	ENSMUST00000148330.8	1705	12	33	2	33	-2	multi-exon	FALSE	canonical	3	65	junction_9	47.751422461613	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAGGTCTATAGCTTGG	NA	False	NA	-14	True	AATAAA	-18	NA	58463192	58451160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
ENSMUSG00000026034.18_3	chr1	-	1521	11	FSM	ENSMUSG00000026034.18	ENSMUST00000151338.8	1538	11	16	1	16	-1	multi-exon	FALSE	canonical	3	9	junction_6	69.2961759406679	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGGTCTATAGCTTGGT	NA	False	NA	-13	True	AATAAA	-19	NA	58463209	58451159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
ENSMUSG00000026034.18_4	chr1	-	1750	13	FSM	ENSMUSG00000026034.18	ENSMUST00000034868.14	1796	13	44	2	44	-2	multi-exon	FALSE	canonical	3	45	junction_9	59.1577458063514	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAGGTCTATAGCTTGG	NA	False	NA	-14	True	AATAAA	-18	NA	58463181	58451160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58459279_58459371_58460241_58460468_58460932_58461094_58463078
ENSMUSG00000026034.18_6	chr1	-	3013	11	FSM	ENSMUSG00000026034.18	ENSMUST00000156931.8	4865	11	39	1813	39	-2	multi-exon	FALSE	canonical	3	126	junction_10	34.9097407609968	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAGGTCTATAGCTTGG	NA	False	NA	-14	True	AATAAA	-18	NA	58463186	58451160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58460468_58460932_58461094_58463078
ENSMUSG00000026034.18_7	chr1	-	2369	6	ISM	ENSMUSG00000026034.18	ENSMUST00000123580.8	2102	7	530	2	530	-2	3prime_fragment	FALSE	canonical	3	188	junction_3	15.3049011757672	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAGGTCTATAGCTTGG	NA	False	NA	-14	True	AATAAA	-18	NA	58455394	58451160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748
ENSMUSG00000026035.16_1	chr1	-	1035	7	FSM	ENSMUSG00000026035.16	ENSMUST00000114348.8	1033	7	-10	8	-5	-5	multi-exon	FALSE	canonical	3	104	junction_6	35.853482707015	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCACATGTGAGTGTCCT	NA	False	NA	-7	True	AATAGA	-20	NA	58484603	58470160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
ENSMUSG00000026035.16_13	chr1	-	1352	7	FSM	ENSMUSG00000026035.16	ENSMUST00000117069.8	1363	7	4	7	4	-4	multi-exon	FALSE	canonical	3	14	junction_6	68.4505092911822	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCACATGTGAGTGTCCTT	NA	False	NA	-6	True	AATAGA	-21	NA	58484584	58470159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58483969
ENSMUSG00000026035.16_16	chr1	-	658	6	FSM	ENSMUSG00000026035.16	ENSMUST00000114345.9	1175	6	-24	541	-24	87	multi-exon	FALSE	canonical	3	104	junction_5	38.958439393795	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGTCATCTCTTTCTT	NA	False	NA	0	True	AATATA	-17	NA	58484552	58473486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
ENSMUSG00000026035.16_2	chr1	-	673	5	ISM	ENSMUSG00000026035.16	ENSMUST00000117069.8	1363	7	2843	7	-1618	-4	3prime_fragment	FALSE	canonical	3	174	junction_2	14.247806848775	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCACATGTGAGTGTCCTT	NA	False	NA	-6	True	AATAGA	-21	NA	58481745	58470159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683
ENSMUSG00000026035.16_4	chr1	-	840	7	FSM	ENSMUSG00000026035.16	ENSMUST00000081677.12	896	7	51	5	-1	-5	multi-exon	FALSE	canonical	3	28	junction_6	63.3151289626386	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCACATGTGAGTGTCCT	NA	False	NA	-7	True	AATAGA	-20	NA	58484594	58470160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484490
ENSMUSG00000026035.16_7	chr1	-	795	7	NIC	ENSMUSG00000026035.16	novel	896	7	NA	NA	14	-5	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	60.3869467131212	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCACATGTGAGTGTCCT	NA	False	NA	-7	True	AATAGA	-20	NA	58484627	58470160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484568
ENSMUSG00000026036.18_0	chr1	+	2979	6	NIC	ENSMUSG00000026036.18	novel	3769	7	NA	NA	-81	139	intron_retention	FALSE	canonical	3	232	junction_2	24.6203168135587	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTGTTTTGTTTCTTG	NA	False	NA	15	True	ATTAAA	-15	NA	58484705	58500682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_58484794_58486792_58487249_58489545_58491375_58494755_58494895_58496938_58497023_58500299
ENSMUSG00000026036.18_1	chr1	+	1395	7	FSM	ENSMUSG00000026036.18	ENSMUST00000087521.13	3769	7	441	1933	-36	139	multi-exon	FALSE	canonical	3	215	junction_3	28.6787765119473	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTGTTTTGTTTCTTG	NA	False	NA	15	True	ATTAAA	-15	NA	58484750	58500682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_58484794_58486792_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
ENSMUSG00000026036.18_9	chr1	+	1346	6	FSM	ENSMUSG00000026036.18	ENSMUST00000171597.2	2098	6	9	743	9	139	multi-exon	FALSE	canonical	3	215	junction_2	29.7119504576862	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTGTTTTGTTTCTTG	NA	False	NA	15	True	ATTAAA	-15	NA	58486798	58500682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
ENSMUSG00000026037.15_0	chr1	-	2950	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	180	431	-4	-431	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGAAACCTGCTGGTCT	NA	False	NA	-6	True	AATAAA	-12	NA	58544088	58502360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
ENSMUSG00000026037.15_1	chr1	-	2942	18	NIC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	-2	-431	combination_of_known_junctions	FALSE	canonical	3	142	junction_17	104.64575272802	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGAAACCTGCTGGTCT	NA	False	NA	-6	True	AATAAA	-12	NA	58544086	58502360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541044_58543930
ENSMUSG00000026039.10_1	chr1	+	4880	9	FSM	ENSMUSG00000026039.10	ENSMUST00000027202.9	4939	9	50	9	50	-8	multi-exon	FALSE	canonical	0	0	junction_8	80.2616813928041	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATTTATTTATCTATCT	5189	False	NA	6	True	ATTAAA	-10	NA	58035179	58065049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_58035472_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517_58057143_58058747_58058902_58063942
ENSMUSG00000026039.10_24	chr1	+	3307	4	ISM	ENSMUSG00000026039.10	ENSMUST00000027202.9	4939	9	17577	783	-9168	-782	3prime_fragment	FALSE	canonical	0	0	junction_3	125.461813579538	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGTTATCTTGTATATCA	NA	False	NA	108	True	AATAAA	-13	NA	58052706	58064275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_58052902_58054517_58057143_58058747_58058902_58063942
ENSMUSG00000026039.10_25	chr1	+	3110	3	ISM	ENSMUSG00000026039.10	ENSMUST00000027202.9	4939	9	20164	9	-6581	-8	3prime_fragment	FALSE	canonical	0	0	junction_2	149.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATTTATTTATCTATCT	NA	False	NA	6	True	ATTAAA	-10	NA	58055293	58065049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_58057143_58058747_58058902_58063942
ENSMUSG00000026047.14_0	chr1	-	2101	9	FSM	ENSMUSG00000026047.14	ENSMUST00000141125.8	2085	9	-18	2	-6	0	multi-exon	FALSE	canonical	3	275	junction_5	36.3145976158349	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGTCTGTTTTGTTACAG	NA	False	NA	-7	True	AATAAA	-15	NA	44157931	44146046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
ENSMUSG00000026047.14_1	chr1	-	1986	10	FSM	ENSMUSG00000026047.14	ENSMUST00000065767.9	2359	10	32	341	-11	0	multi-exon	FALSE	canonical	3	275	junction_6	34.7545183135931	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGTCTGTTTTGTTACAG	NA	False	NA	-7	True	AATAAA	-15	NA	44157936	44146046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
ENSMUSG00000026048.17_3	chr1	+	3749	15	NNC	ENSMUSG00000026048.17	novel	3907	15	NA	NA	9	-90	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	38.3661202582887	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGAATGTATAGTTTTA	NA	False	NA	4	True	ATTAAA	-19	NA	44187077	44220330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_44187311_44196096_44196273_44197303_44197420_44197964_44198052_44200136_44200198_44200969_44201114_44203036_44203245_44205968_44207043_44212497_44212740_44213071_44213192_44213321_44213536_44214998_44215144_44217333_44217535_44218303_44218392_44219690
ENSMUSG00000026049.12_0	chr1	-	1185	6	FSM	ENSMUSG00000026049.12	ENSMUST00000150911.8	960	6	19	-244	1	-1	multi-exon	FALSE	canonical	3	213	junction_5	82.045353311446	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGGTGCCTTTGTTTTA	NA	False	NA	-4	True	ATTAAA	-16	NA	44141582	44125776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141487
ENSMUSG00000026049.12_2	chr1	-	1241	7	NIC	ENSMUSG00000026049.12	novel	1272	8	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	144	junction_6	127.50348579113	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGGTGCCTTTGTTTTA	NA	False	NA	-4	True	ATTAAA	-16	NA	44141580	44125776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059_44141118_44141487
ENSMUSG00000026049.12_3	chr1	-	1559	6	FSM	ENSMUSG00000026049.12	ENSMUST00000147571.8	1360	6	-6	-193	-6	-1	multi-exon	FALSE	canonical	3	149	junction_5	107.444125013888	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGGTGCCTTTGTTTTA	NA	False	NA	-4	True	ATTAAA	-16	NA	44141528	44125776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059
ENSMUSG00000026049.12_7	chr1	-	1177	7	FSM	ENSMUSG00000026049.12	ENSMUST00000133677.8	935	7	1	-243	1	-1	multi-exon	FALSE	canonical	3	15	junction_5	163.292596960861	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGGTGCCTTTGTTTTA	NA	False	NA	-4	True	ATTAAA	-16	NA	44141582	44125776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139096_44141059_44141118_44141487
ENSMUSG00000026049.12_8	chr1	-	957	5	NIC	ENSMUSG00000026049.12	novel	960	6	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_3	165.394981786026	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGGTGCCTTTGTTTTA	NA	False	NA	-4	True	ATTAAA	-16	NA	44141585	44125776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44139007_44139162_44141487
ENSMUSG00000026064.17_0	chr1	-	2836	6	FSM	ENSMUSG00000026064.17	ENSMUST00000232841.2	4236	6	110	1290	110	355	multi-exon	FALSE	canonical	1	3	junction_5	963.121093113426	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATCTGAAATGTTTCCT	NA	False	NA	NA	False	AATAAA	-12	NA	30988280	30980672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_30982405_30983012_30983088_30983616_30983748_30984018_30984112_30985118_30985721_30988077
ENSMUSG00000026073.14_0	chr1	+	1260	8	ISM	ENSMUSG00000026073.14	ENSMUST00000027243.13	1419	9	17716	12	16429	0	3prime_fragment	FALSE	canonical	1	2	junction_5	1.35526185435788	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATACGAGAGTGACCC	NA	False	NA	NA	False	AATAAA	-8	NA	40141573	40164379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_40141698_40144423_40144683_40151114_40151296_40154183_40154359_40157114_40157178_40160068_40160205_40162281_40162425_40164200
ENSMUSG00000026074.16_0	chr1	+	4135	29	NIC	ENSMUSG00000026074.16	novel	5632	30	NA	NA	-9	-6	combination_of_known_junctions	FALSE	canonical	3	15	junction_15	25.9180419391432	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCACCATCGGTGCTAGG	NA	False	NA	22	True	AATAAA	-32	NA	39940063	40064123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039690_40039910_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ENSMUSG00000026074.16_10	chr1	+	4266	30	NIC	ENSMUSG00000026074.16	novel	3918	31	NA	NA	-8	-6	combination_of_known_junctions	FALSE	canonical	1	3	junction_15	27.1539408587725	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCACCATCGGTGCTAGG	NA	False	NA	22	True	AATAAA	-32	NA	39940064	40064123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40042922_40043148_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ENSMUSG00000026074.16_15	chr1	+	4278	30	NIC	ENSMUSG00000026074.16	novel	3918	31	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	28	junction_19	24.4259661839409	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCGGTGCTAGGAGTGC	NA	False	NA	27	True	AATAAA	-37	NA	39940063	40064128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ENSMUSG00000026074.16_18	chr1	+	4440	31	NIC	ENSMUSG00000026074.16	novel	3960	32	NA	NA	-17	-9	combination_of_known_junctions	FALSE	canonical	3	13	junction_15	28.6189719514094	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTCCACCATCGGTGCT	NA	False	NA	19	True	AATAAA	-29	NA	39940055	40064120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40040589_40040752_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ENSMUSG00000026074.16_22	chr1	+	4360	30	NIC	ENSMUSG00000026074.16	novel	3918	31	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	28	junction_19	23.9127924112531	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATCGGTGCTAGGAGTG	NA	False	NA	26	True	AATAAA	-36	NA	39940073	40064127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039690_40039910_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ENSMUSG00000026074.16_24	chr1	+	4457	31	NIC	ENSMUSG00000026074.16	novel	3918	31	NA	NA	-8	-13	combination_of_known_junctions	FALSE	canonical	3	28	junction_19	26.6174754625603	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGACTCCACCATCGG	NA	False	NA	15	True	AATAAA	-25	NA	39940064	40064116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40050809_40051002_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ENSMUSG00000026074.16_39	chr1	+	4321	30	NIC	ENSMUSG00000026074.16	novel	4082	31	NA	NA	-6	-9	combination_of_known_junctions	FALSE	canonical	3	15	junction_15	27.9486534467889	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTCCACCATCGGTGCT	NA	False	NA	19	True	AATAAA	-29	NA	39940066	40064120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039690_40039910_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40050809_40051002_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ENSMUSG00000026074.16_76	chr1	+	928	1	ISM	ENSMUSG00000026074.16	ENSMUST00000168431.7	5632	30	124463	7	2166	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCATGGCTTCATGGTC	5186	False	NA	NA	False	AATAAA	-16	NA	40064535	40065463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_40064500_40065500
ENSMUSG00000026074.16_9	chr1	+	4567	31	NIC	ENSMUSG00000026074.16	novel	4082	31	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	3	28	junction_19	26.1908380927377	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATCGGTGCTAGGAGTG	NA	False	NA	26	True	AATAAA	-36	NA	39940058	40064127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039690_40039910_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40050809_40051002_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
ENSMUSG00000026078.11_0	chr1	+	1122	6	FSM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	2192	600	-41	-8	multi-exon	FALSE	canonical	3	825	junction_1	70.5532423067856	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAAATAACAGTGCAAA	NA	False	NA	NA	False	AATAAA	-18	NA	39026880	39035719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
ENSMUSG00000026078.11_11	chr1	+	1075	5	ISM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	5635	600	3378	-8	3prime_fragment	FALSE	canonical	3	894	junction_3	53.7959106252511	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAAATAACAGTGCAAA	NA	False	NA	NA	False	AATAAA	-18	NA	39030323	39035719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
ENSMUSG00000026080.14_0	chr1	-	3106	7	FSM	ENSMUSG00000026080.15	ENSMUST00000027249.13	2975	7	-141	10	2	0	multi-exon	FALSE	canonical	2	9	junction_6	2.75378527364305	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAACAAAAGTGTATCTGG	NA	False	NA	NA	False	ATTAAA	-16	NA	38937232	38902957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_38905117_38907061_38907168_38910681_38910917_38913029_38913122_38923430_38923563_38935017_38935138_38936970
ENSMUSG00000026080.14_1	chr1	-	3209	8	NIC	ENSMUSG00000026080.15	novel	2975	7	NA	NA	9	0	intron_retention	FALSE	canonical	1	1	junction_6	4.89064079103534	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAAAGTGTATCTGGGT	NA	False	NA	NA	False	ATTAAA	-18	NA	38937225	38902955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_38905117_38907061_38907168_38910681_38910917_38913029_38913122_38923430_38923563_38933644_38933753_38935017_38935138_38936970
ENSMUSG00000026080.14_2	chr1	-	2052	1	ISM	ENSMUSG00000026080.15	ENSMUST00000027249.13	2975	7	32084	8	5834	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAAAGTGTATCTGGGT	NA	False	NA	NA	False	ATTAAA	-18	NA	38905007	38902955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_38903000_38905000
ENSMUSG00000026082.12_1	chr1	-	4250	23	FSM	ENSMUSG00000026082.12	ENSMUST00000027251.12	4262	23	3	9	3	1	multi-exon	FALSE	canonical	3	101	junction_15	29.8629099122934	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTACAGGTTTTTTT	NA	False	NA	-9	True	AATAAA	-13	NA	38168740	38091875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_38092280_38092696_38092800_38092920_38093078_38093164_38093377_38093825_38093947_38094371_38094606_38095344_38095548_38095797_38095964_38096754_38096858_38098202_38098376_38102195_38102417_38106580_38106701_38110423_38110579_38113395_38113525_38118370_38118480_38122784_38122902_38124625_38124734_38127051_38127756_38131143_38131297_38137933_38138103_38146648_38146776_38147484_38147549_38168542
ENSMUSG00000026082.12_17	chr1	-	4830	23	NIC	ENSMUSG00000026082.12	novel	4262	23	NA	NA	4	2	intron_retention	FALSE	canonical	3	30	junction_14	42.6752100606313	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGTACAGGTTTTTTTT	NA	False	NA	-8	True	AATAAA	-14	NA	38168739	38091874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_38092280_38092696_38092800_38092920_38093078_38093164_38093377_38093825_38093947_38094371_38094606_38095344_38095548_38095797_38095964_38096754_38096858_38098202_38098376_38102195_38102417_38106580_38106701_38110423_38110579_38113395_38114105_38118370_38118480_38122784_38122902_38124625_38124734_38127051_38127756_38131143_38131297_38137933_38138103_38146648_38146776_38147484_38147549_38168542
ENSMUSG00000026082.12_4	chr1	-	4241	23	NIC	ENSMUSG00000026082.12	novel	4262	23	NA	NA	8	0	combination_of_known_splicesites	TRUE	canonical	3	48	junction_15	37.6965099114511	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTGTACAGGTTTTTT	NA	False	NA	-10	True	AATAAA	-12	NA	38168735	38091876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_38092280_38092696_38092800_38092920_38093078_38093164_38093377_38093825_38093947_38094371_38094606_38095344_38095548_38095797_38095964_38096754_38096858_38098202_38098376_38102195_38102417_38106580_38106701_38110423_38110579_38113395_38113525_38118370_38118477_38122784_38122902_38124625_38124734_38127051_38127756_38131143_38131297_38137933_38138103_38146648_38146776_38147484_38147549_38168542
ENSMUSG00000026082.12_49	chr1	-	5025	24	NIC	ENSMUSG00000026082.12	novel	4262	23	NA	NA	10	-4	intron_retention	TRUE	canonical	3	30	junction_14	57.1871203128697	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACAGGTTTTTTTTTTCT	NA	False	NA	-4	True	AATAAA	-18	NA	38168733	38091870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_38092280_38092696_38092800_38092920_38093078_38093164_38093377_38093825_38093947_38094371_38094606_38095344_38095548_38095797_38095964_38096754_38096858_38098202_38098376_38102195_38102417_38106580_38106701_38110423_38110579_38113395_38114105_38118370_38118477_38120239_38120440_38122784_38122902_38124625_38124734_38127051_38127756_38131143_38131297_38137933_38138103_38146648_38146776_38147484_38147549_38168542
ENSMUSG00000026082.12_87	chr1	-	1824	6	ISM	ENSMUSG00000026082.12	ENSMUST00000027251.12	4262	23	3	34776	3	4589	5prime_fragment	FALSE	canonical	3	163	junction_5	15.5769059828966	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGTAATCTTAGATTATT	NA	False	NA	NA	False	ATTAAA	-34	NA	38168740	38126642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_38127756_38131143_38131297_38137933_38138103_38146648_38146776_38147484_38147549_38168542
ENSMUSG00000026083.13_0	chr1	+	4117	24	FSM	ENSMUSG00000026083.13	ENSMUST00000027252.8	7797	24	119	3561	0	-3	multi-exon	FALSE	canonical	3	450	junction_9	76.9774965275217	1217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCAAGCTTCTACAGATT	1408	False	NA	34	True	ATTAAA	-21	NA	38037209	38091099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244_38061396_38071357_38071457_38072148_38072239_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404_38084588_38084728_38084891_38085692_38085825_38087873_38088006_38088097_38088175_38088256_38088422_38089267_38089407_38090203_38090366_38090686
ENSMUSG00000026083.13_54	chr1	+	3319	21	ISM	ENSMUSG00000026083.13	ENSMUST00000027252.8	7797	24	21246	3561	21127	-3	3prime_fragment	FALSE	canonical	3	450	junction_6	80.2442988629099	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCAAGCTTCTACAGATT	9083	False	NA	34	True	ATTAAA	-21	NA	38058336	38091099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_38058616_38060674_38060893_38061244_38061396_38071357_38071457_38072148_38072239_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404_38084588_38084728_38084891_38085692_38085825_38087873_38088006_38088097_38088175_38088256_38088422_38089267_38089407_38090203_38090366_38090686
ENSMUSG00000026087.12_0	chr1	+	694	6	FSM	ENSMUSG00000026087.12	ENSMUST00000027256.12	969	6	76	199	10	-2	multi-exon	FALSE	canonical	3	545	junction_1	191.904559612324	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCCGCTGATGGAGTCC	NA	False	NA	18	True	ATTAAA	-18	NA	37929633	37937417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_37929666_37932023_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUSG00000026087.12_1	chr1	+	624	5	FSM	ENSMUSG00000026087.12	ENSMUST00000193673.6	662	5	9	29	-2	-3	multi-exon	FALSE	canonical	3	190	junction_1	367.71796257458	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTCCGCTGATGGAGTC	NA	False	NA	17	True	ATTAAA	-17	NA	37929621	37937416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_37929666_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUSG00000026087.12_5	chr1	+	1221	4	FSM	ENSMUSG00000026087.12	ENSMUST00000195373.2	587	4	-637	3	365	-3	multi-exon	FALSE	canonical	3	1006	junction_1	22.6421435969889	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTCCGCTGATGGAGTC	NA	False	NA	17	True	ATTAAA	-17	NA	37932378	37937416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUSG00000026087.12_6	chr1	+	662	5	FSM	ENSMUSG00000026087.12	ENSMUST00000194857.6	501	5	9	-170	9	-3	multi-exon	FALSE	canonical	3	895	junction_1	64.9514241568266	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTCCGCTGATGGAGTC	NA	False	NA	17	True	ATTAAA	-17	NA	37932022	37937416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUSG00000026087.12_7	chr1	+	2266	6	NIC	ENSMUSG00000026087.12	novel	969	6	NA	NA	23	-5	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	395.588978612903	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCATCTCCGCTGATGGAG	NA	False	NA	15	True	ATTAAA	-15	NA	37929646	37937414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_37931254_37932023_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUSG00000026088.16_14	chr1	-	2606	5	NIC	ENSMUSG00000026088.16	novel	1231	7	NA	NA	44	-1	intron_retention	FALSE	canonical	3	173	junction_3	16.5906600230371	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTCTGGATCCACTCAC	NA	False	NA	-3	True	AATAAA	-16	NA	37929444	37917971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_37918445_37918640_37918702_37920013_37921780_37924295_37924398_37929240
ENSMUSG00000026088.16_2	chr1	-	1181	7	FSM	ENSMUSG00000026088.16	ENSMUST00000027257.10	1231	7	47	3	43	-1	multi-exon	FALSE	canonical	3	173	junction_5	18.2543754267908	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTCTGGATCCACTCAC	NA	False	NA	-3	True	AATAAA	-16	NA	37929445	37917971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_37918445_37918640_37918702_37920013_37920130_37920779_37920867_37921642_37921780_37924295_37924398_37929240
ENSMUSG00000026090.17_1	chr1	-	4147	9	ISM	ENSMUSG00000026090.17	ENSMUST00000162875.8	4634	10	75416	0	-19427	0	3prime_fragment	FALSE	canonical	1	1	junction_1	2.95539760438422	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCTCTGTGCGTCAAT	7774	False	NA	-1	True	AATAAA	-15	NA	37683750	37650757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_37651478_37652417_37652563_37653561_37653750_37662841_37665150_37667297_37667508_37670401_37670564_37670896_37671033_37676941_37677111_37683641
ENSMUSG00000026090.17_2	chr1	-	4363	10	NIC	ENSMUSG00000026090.17	novel	4634	10	NA	NA	-23	-7	combination_of_known_junctions	FALSE	canonical	1	2	junction_5	2.62466929133727	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTCTGCTCTGTG	NA	False	NA	-8	True	AATAAA	-8	NA	37758899	37650764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_37651481_37652417_37652563_37653561_37653750_37662841_37665150_37667297_37667508_37670401_37670564_37670896_37671033_37676941_37677111_37683641_37683722_37758650
ENSMUSG00000026090.17_4	chr1	-	4349	10	FSM	ENSMUSG00000026090.17	ENSMUST00000162875.8	4634	10	278	7	-12	-7	multi-exon	FALSE	canonical	1	1	junction_1	2.83278861866266	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTCTGCTCTGTG	NA	False	NA	-8	True	AATAAA	-8	NA	37758888	37650764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_37651478_37652417_37652563_37653561_37653750_37662841_37665150_37667297_37667508_37670401_37670564_37670896_37671033_37676941_37677111_37683641_37683722_37758650
ENSMUSG00000026094.15_1	chr1	-	2672	8	FSM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	21	600	21	-600	multi-exon	FALSE	canonical	3	57	junction_1	6.25316246521123	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTAGATATTCTTTCCTT	707	False	NA	-5	True	GATAAA	-22	NA	53824362	53795264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_53796930_53800140_53800321_53801747_53801797_53803190_53803318_53805079_53805225_53810768_53810982_53815675_53815839_53824232
ENSMUSG00000026094.15_3	chr1	-	3066	7	NIC	ENSMUSG00000026094.15	novel	3293	8	NA	NA	-11	-8	combination_of_known_junctions	TRUE	canonical	0	0	junction_6	25.4820198048219	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGAAGCTGCCTTAAGT	742	False	NA	NA	False	AATAAA	-18	NA	53824327	53794672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_53796930_53800140_53800321_53801747_53801797_53803190_53803318_53805079_53805225_53810768_53810982_53824232
ENSMUSG00000026094.15_5	chr1	-	932	1	ISM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	28778	9	6247	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTGAAGCTGCCTTAAG	NA	False	NA	NA	False	AATAAA	-17	NA	53795605	53794673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_53794700_53795600
ENSMUSG00000026094.15_6	chr1	-	2880	6	ISM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	13446	55	-9085	-55	3prime_fragment	FALSE	canonical	3	57	junction_1	7.29383301152419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTCCCATGTTGAAGTG	NA	False	NA	NA	False	AATAAA	-31	NA	53810937	53794719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_53796930_53800140_53800321_53801747_53801797_53803190_53803318_53805079_53805225_53810768
ENSMUSG00000026094.15_7	chr1	-	1781	2	ISM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	24117	610	1586	-610	3prime_fragment	FALSE	canonical	3	57	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAACTTCATGTTAGATA	NA	False	NA	-15	True	GATAAA	-12	NA	53800266	53795274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_53796930_53800140
ENSMUSG00000026095.16_0	chr1	-	2353	6	FSM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	62	27	62	1	multi-exon	FALSE	canonical	3	502	junction_1	45.94344349306	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGGGTGTAGTAGTTT	NA	False	NA	-29	True	AATAAA	-14	NA	53391849	53383802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_53384139_53385738_53385921_53386173_53387718_53389145_53389222_53390038_53390093_53391688
ENSMUSG00000026095.16_4	chr1	-	1520	3	ISM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	4738	25	3261	3	3prime_fragment	FALSE	canonical	3	502	junction_1	45	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGTGTAGTAGTTTCA	NA	False	NA	-27	True	AATAAA	-16	NA	53387173	53383800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_53384139_53385738_53385921_53386173
ENSMUSG00000026096.15_0	chr1	+	1860	10	Fusion	ENSMUSG00000100679.2_ENSMUSG00000026096.15	novel	1067	5	NA	NA	-9	-17	multi-exon	FALSE	canonical	2	9	junction_3	51.218486246016	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACCAGTCAAG	NA	False	NA	-6	True	AATAAA	-14	NA	53336260	53365309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr1_+_53336348_53338130_53338312_53344613_53344766_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
ENSMUSG00000026096.15_14	chr1	+	1640	8	NIC	ENSMUSG00000026096.15	novel	1868	8	NA	NA	0	-17	combination_of_known_junctions	FALSE	canonical	3	19	junction_2	46.6559268496949	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACCAGTCAAG	NA	False	NA	-6	True	AATAAA	-14	NA	53352812	53365309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_53353018_53354014_53354259_53357065_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
ENSMUSG00000026096.15_4	chr1	+	1645	8	FSM	ENSMUSG00000026096.15	ENSMUST00000027265.10	1868	8	30	193	0	-17	multi-exon	FALSE	canonical	3	122	junction_2	14.7537611946159	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACCAGTCAAG	NA	False	NA	-6	True	AATAAA	-14	NA	53352812	53365309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
ENSMUSG00000026096.15_6	chr1	+	5434	1	NIC	ENSMUSG00000026096.15	novel	1868	8	NA	NA	-2	446	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATGAAAAACCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53352829	53358263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_53352800_53358300
ENSMUSG00000026096.15_8	chr1	+	1257	7	NIC	ENSMUSG00000026096.15	novel	1868	8	NA	NA	0	-17	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	47.461387815079	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACCAGTCAAG	NA	False	NA	-6	True	AATAAA	-14	NA	53352812	53365309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_53353018_53354014_53354259_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
ENSMUSG00000026097.10_0	chr1	+	1827	4	FSM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	12	71	12	-71	multi-exon	FALSE	canonical	3	184	junction_2	12.7104506432917	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTATTTTAAGTTTTCC	NA	False	NA	22	True	AATAAA	-16	NA	53336265	53349397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_53336348_53338130_53338312_53344613_53344766_53347985
ENSMUSG00000026097.10_3	chr1	+	5047	3	ISM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	12	71	12	-71	intron_retention	FALSE	canonical	3	184	junction_2	6.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTATTTTAAGTTTTCC	NA	False	NA	22	True	AATAAA	-16	NA	53336265	53349397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_53336348_53338130_53338312_53344613
ENSMUSG00000026097.10_8	chr1	+	1513	2	ISM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	8411	71	8411	-71	3prime_fragment	FALSE	canonical	3	215	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTATTTTAAGTTTTCC	NA	False	NA	22	True	AATAAA	-16	NA	53344664	53349397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_53344766_53347985
ENSMUSG00000026097.10_9	chr1	+	1001	1	ISM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	12143	71	12143	-71	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTATTTTAAGTTTTCC	NA	False	NA	22	True	AATAAA	-16	NA	53348396	53349397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_53348400_53349400
ENSMUSG00000026098.14_0	chr1	-	3018	13	FSM	ENSMUSG00000026098.14	ENSMUST00000027267.14	3054	13	27	9	-16	-9	multi-exon	FALSE	canonical	3	136	junction_1	15.4495145554804	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATAAAATTTTGTTTTCA	6079	False	NA	NA	False	AATAAA	-9	NA	53336150	53228354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53336044
ENSMUSG00000026098.14_17	chr1	-	1702	5	ISM	ENSMUSG00000026098.14	ENSMUST00000027267.14	3054	13	89833	6	75223	-6	3prime_fragment	FALSE	canonical	3	136	junction_1	22.3313120975907	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATTTTGTTTTCACGT	NA	False	NA	NA	False	AATAAA	-12	NA	53246344	53228351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720
ENSMUSG00000026098.14_6	chr1	-	3152	13	NIC	ENSMUSG00000026098.14	novel	3054	13	NA	NA	4	-9	combination_of_known_junctions	FALSE	canonical	3	29	junction_12	39.2778563569857	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATAAAATTTTGTTTTCA	6099	False	NA	NA	False	AATAAA	-9	NA	53336130	53228354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53335890
ENSMUSG00000026102.10_0	chr1	-	1810	6	FSM	ENSMUSG00000026102.10	ENSMUST00000027271.9	5767	6	-38	3995	-38	246	multi-exon	FALSE	canonical	2	5	junction_1	1.49666295470958	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGTACAGTTCAAGTG	NA	False	NA	NA	False	AATAAA	-17	NA	52856885	52828580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_52829377_52830846_52831022_52833628_52833830_52836199_52836261_52838443_52838696_52856560
ENSMUSG00000026102.10_1	chr1	-	1097	1	ISM	ENSMUSG00000026102.10	ENSMUST00000027271.9	5767	6	31165	0	8525	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTATGGGTATAAAATA	NA	False	NA	NA	False	NA	NA	NA	52825682	52824585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_52824600_52825700
ENSMUSG00000026103.15_11	chr1	-	4460	15	NIC	ENSMUSG00000026103.15	novel	5596	15	NA	NA	7	-3	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	64.5226190366366	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTATTGTTTTTTTTA	NA	False	NA	-3	True	AATAAA	-13	NA	52272375	52224441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_52227013_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013_52239047_52246459_52246519_52251361_52251526_52253636_52253717_52254723_52254854_52258646_52258769_52259101_52259199_52271750
ENSMUSG00000026103.15_3	chr1	-	4950	18	FSM	ENSMUSG00000026103.15	ENSMUST00000114513.9	4966	18	7	9	7	-9	multi-exon	FALSE	canonical	3	13	junction_3	80.7225587298202	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAACTATGAGAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	52272375	52202615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_52205474_52207494_52207559_52207643_52207721_52208055_52208118_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013_52239047_52246459_52246519_52251361_52251526_52253636_52253717_52254723_52254854_52258646_52258769_52259101_52259199_52271750
ENSMUSG00000026103.15_6	chr1	-	4401	15	FSM	ENSMUSG00000026103.15	ENSMUST00000114510.8	5596	15	16	1179	7	-3	multi-exon	FALSE	canonical	3	106	junction_8	52.7471829211992	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTATTGTTTTTTTTA	NA	False	NA	-3	True	AATAAA	-13	NA	52272375	52224441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_52226954_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013_52239047_52246459_52246519_52251361_52251526_52253636_52253717_52254723_52254854_52258646_52258769_52259101_52259199_52271750
ENSMUSG00000026103.15_7	chr1	-	4492	8	ISM	ENSMUSG00000026103.15	ENSMUST00000114510.8	5596	15	31977	1179	-773	-3	3prime_fragment	FALSE	canonical	3	177	junction_1	21.4037952003749	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTATTGTTTTTTTTA	NA	False	NA	-3	True	AATAAA	-13	NA	52240414	52224441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_52226954_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013
ENSMUSG00000026103.15_9	chr1	-	1851	1	ISM	ENSMUSG00000026103.15	ENSMUST00000114510.8	5596	15	46099	1179	3776	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTATTGTTTTTTTTA	6928	False	NA	-3	True	AATAAA	-13	NA	52226292	52224441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_52224400_52226300
ENSMUSG00000026104.15_0	chr1	+	4165	25	FSM	ENSMUSG00000026104.15	ENSMUST00000070968.14	5151	25	37	949	0	-91	multi-exon	FALSE	canonical	3	19	junction_12	6.79038842777054	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTCTAGTGTTATGAG	3300	False	NA	NA	False	TATAAA	-8	NA	52158650	52200075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_52158783_52159070_52159232_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
ENSMUSG00000026104.15_1	chr1	+	2744	23	FSM	ENSMUSG00000026104.15	ENSMUST00000186574.7	2834	23	52	38	0	-38	multi-exon	FALSE	canonical	3	19	junction_12	6.78598458418965	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGCATGAAT	3300	False	NA	NA	False	NA	NA	NA	52158650	52194533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_52158783_52159070_52159232_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144
ENSMUSG00000026104.15_11	chr1	+	3033	16	ISM	ENSMUSG00000026104.15	ENSMUST00000186857.7	4241	25	19760	84	-10852	-84	3prime_fragment	FALSE	canonical	3	19	junction_3	6.91343297903115	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTATGAGTTGGTTT	1033	False	NA	NA	False	TATAAA	-15	NA	52178410	52200082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
ENSMUSG00000026104.15_12	chr1	+	2645	11	ISM	ENSMUSG00000026104.15	ENSMUST00000186857.7	4241	25	25657	95	-4955	-95	3prime_fragment	FALSE	canonical	3	20	junction_1	6.86731388535576	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAATGTCTAGTGTTA	6930	False	NA	NA	False	TATAAA	-4	NA	52184307	52200071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
ENSMUSG00000026104.15_16	chr1	+	4135	25	NIC	ENSMUSG00000026104.15	novel	4241	25	NA	NA	-13	-84	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	9.12414379544733	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTATGAGTTGGTTT	3285	False	NA	NA	False	TATAAA	-15	NA	52158635	52200082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_52158768_52159070_52159195_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
ENSMUSG00000026104.15_19	chr1	+	2719	23	NIC	ENSMUSG00000026104.15	novel	2834	23	NA	NA	0	-26	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	8.26085561774264	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCATGAATAAAAAAGAAAAA	3300	False	NA	NA	False	NA	NA	NA	52158650	52194545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_52158783_52159070_52159195_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144
ENSMUSG00000026104.15_23	chr1	+	3306	25	NIC	ENSMUSG00000026104.15	novel	3998	25	NA	NA	11	470	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	8.85757287422588	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCCATTAAGGGGGCCAG	3443	False	NA	NA	False	AATAAA	-12	NA	52158793	52199189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_52158953_52159070_52159232_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
ENSMUSG00000026104.15_3	chr1	+	4167	25	FSM	ENSMUSG00000026104.15	ENSMUST00000186857.7	4241	25	-8	82	-6	-82	multi-exon	FALSE	canonical	3	7	junction_1	8.12649558884736	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTATGAGTTGGTTTAA	3292	False	NA	NA	False	TATAAA	-17	NA	52158642	52200084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_52158768_52159070_52159232_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
ENSMUSG00000026104.15_5	chr1	+	2694	23	NIC	ENSMUSG00000026104.15	novel	2803	23	NA	NA	0	-38	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	9.40689478103628	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGCATGAAT	3298	False	NA	NA	False	NA	NA	NA	52158648	52194533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_52158768_52159070_52159195_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144
ENSMUSG00000026104.15_6	chr1	+	4128	25	NIC	ENSMUSG00000026104.15	novel	5151	25	NA	NA	0	-91	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	8.09663853432741	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTCTAGTGTTATGAG	3300	False	NA	NA	False	TATAAA	-8	NA	52158650	52200075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_52158783_52159070_52159195_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
ENSMUSG00000026107.12_0	chr1	-	1471	1	ISM	ENSMUSG00000026107.12	ENSMUST00000189542.7	4790	8	10921	146	5918	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGAGTCCTGTATCTGT	6540	False	NA	NA	False	AAAACA	-22	NA	51506637	51505166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_51505200_51506600
ENSMUSG00000026107.12_1	chr1	-	2652	6	FSM	ENSMUSG00000026107.12	ENSMUST00000185534.2	708	6	2	-1946	2	292	multi-exon	FALSE	canonical	1	1	junction_5	22.105203007437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGATACTGGGATTTAA	NA	False	NA	NA	False	AATAGA	-14	NA	51517556	51508354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51517459
ENSMUSG00000026107.12_10	chr1	-	2300	6	FSM	ENSMUSG00000026107.12	ENSMUST00000188204.7	972	6	-19	-1309	7	-10	multi-exon	FALSE	canonical	2	4	junction_5	20.9227149289952	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTTAAGATATAGGAG	NA	False	NA	-11	True	AATAAA	-22	NA	51517577	51508656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51517530
ENSMUSG00000026107.12_2	chr1	-	2826	6	FSM	ENSMUSG00000026107.12	ENSMUST00000027279.12	2838	6	2	10	2	-10	multi-exon	FALSE	canonical	3	37	junction_5	8.25590697622012	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTTAAGATATAGGAG	NA	False	NA	-11	True	AATAAA	-22	NA	51517556	51508656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51516983
ENSMUSG00000026107.12_3	chr1	-	3042	5	FSM	ENSMUSG00000026107.12	ENSMUST00000186684.7	2677	5	2	-367	2	-2	multi-exon	FALSE	canonical	3	52	junction_2	4.09267638593623	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGATATAGGAGTAACAGAA	NA	False	NA	-3	True	AATAAA	-30	NA	51517556	51508648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636
ENSMUSG00000026107.12_5	chr1	-	1851	1	NIC	ENSMUSG00000026107.12	novel	4790	8	NA	NA	2054	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGATATAGGAGTAACAG	2676	False	NA	-5	True	AATAAA	-28	NA	51510501	51508650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_51508600_51510500
ENSMUSG00000026110.16_0	chr1	-	2857	1	ISM	ENSMUSG00000026110.16	ENSMUST00000042161.15	7030	15	93989	50	53849	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCTATGTTGAATCAAG	7312	False	NA	-8	True	AATAAA	-9	NA	37481327	37478470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_37478500_37481300
ENSMUSG00000026110.16_1	chr1	-	7205	16	FSM	ENSMUSG00000026110.16	ENSMUST00000151952.8	7251	16	-4	50	-4	-50	multi-exon	FALSE	canonical	2	9	junction_15	49.471158825679	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCTATGTTGAATCAAG	NA	False	NA	-8	True	AATAAA	-9	NA	37580101	37478470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_37483767_37483887_37484001_37488176_37488244_37489409_37489489_37491311_37491506_37491602_37491711_37493824_37493956_37495670_37495786_37501972_37502049_37503501_37503616_37505617_37505665_37529340_37529475_37534953_37535095_37537653_37537822_37575119_37575486_37580045
ENSMUSG00000026110.16_5	chr1	-	7199	16	NIC	ENSMUSG00000026110.16	novel	7251	16	NA	NA	-19	-44	combination_of_known_junctions	FALSE	canonical	2	9	junction_15	53.3381664476761	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTGAATCAAGATTCCT	NA	False	NA	-2	True	AATAAA	-15	NA	37580116	37478464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_37483767_37483887_37484001_37488176_37488244_37489409_37489489_37491311_37491506_37491602_37491711_37493824_37493956_37495670_37495786_37501972_37502049_37503501_37503616_37505617_37505665_37529340_37529475_37534953_37535095_37537680_37537822_37575119_37575486_37580045
ENSMUSG00000026111.16_0	chr1	+	1048	6	FSM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	45	1	-2	-1	multi-exon	FALSE	canonical	3	315	junction_1	76.7739539166767	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCTGTGACTGTTTATT	NA	False	NA	NA	False	AATAAA	-12	NA	37469264	37478064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUSG00000026111.16_1	chr1	+	2247	5	ISM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	45	5	-2	-5	intron_retention	FALSE	canonical	3	315	junction_1	77.3413699128739	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAAAGCTGTGACTGTT	NA	False	NA	NA	False	AATAAA	-8	NA	37469264	37478060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457
ENSMUSG00000026111.16_2	chr1	+	1254	6	FSM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	15	145	-1	-5	multi-exon	FALSE	canonical	3	180	junction_1	129.498416978741	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAAAGCTGTGACTGTT	NA	False	NA	NA	False	AATAAA	-8	NA	37469265	37478060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUSG00000026111.16_3	chr1	+	1099	6	NIC	ENSMUSG00000026111.16	novel	1414	6	NA	NA	-2	-5	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	188.928134485047	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAAAGCTGTGACTGTT	NA	False	NA	NA	False	AATAAA	-8	NA	37469264	37478060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUSG00000026111.16_7	chr1	+	2457	5	ISM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	15	145	-1	-5	intron_retention	FALSE	canonical	3	180	junction_1	134.998148135447	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAAAGCTGTGACTGTT	NA	False	NA	NA	False	AATAAA	-8	NA	37469265	37478060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457
ENSMUSG00000026112.8_0	chr1	-	3779	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	76	8	-27	-8	multi-exon	FALSE	canonical	3	395	junction_2	27.5	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACATCTTTGTTCTGTTT	6348	False	NA	-11	True	NA	NA	NA	37469108	37456172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_37459709_37467422_37467507_37468949
ENSMUSG00000026112.8_1	chr1	-	2886	1	ISM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	10126	8	10023	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACATCTTTGTTCTGTTT	NA	False	NA	-11	True	NA	NA	NA	37459058	37456172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_37456200_37459100
ENSMUSG00000026113.18_11	chr1	+	426	1	ISM	ENSMUSG00000026113.18	ENSMUST00000027287.11	5691	26	110417	3	32636	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGAGTCTCACTTGATT	NA	False	NA	NA	False	AATAAA	-16	NA	37449388	37449814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_37449400_37449800
ENSMUSG00000026116.12_0	chr1	-	2547	11	ISM	ENSMUSG00000026116.12	ENSMUST00000027290.12	6546	41	131317	12	2326	-9	3prime_fragment	FALSE	canonical	3	291	junction_2	37.5584877224842	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAAGCCTTGAATTGTTT	NA	False	NA	-10	True	AATAAA	-13	NA	36847291	36831283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_36832287_36833124_36833280_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835406_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964
ENSMUSG00000026116.12_1	chr1	-	6627	41	FSM	ENSMUSG00000026116.12	ENSMUST00000027290.12	6546	41	-93	12	-93	-9	multi-exon	TRUE	canonical	3	231	junction_29	35.4925256216009	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAAGCCTTGAATTGTTT	7128	False	NA	-10	True	AATAAA	-13	NA	36978701	36831283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36832287_36833124_36833280_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835406_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245
ENSMUSG00000026116.12_12	chr1	-	6624	41	NNC	ENSMUSG00000026116.12	novel	6698	42	NA	NA	-93	-9	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_2	49.5943482163038	81	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAAGCCTTGAATTGTTT	7128	False	NA	-10	True	AATAAA	-13	NA	36978701	36831283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_36832287_36833124_36833277_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835406_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245
ENSMUSG00000026116.12_121	chr1	-	3255	26	NIC	ENSMUSG00000026116.12	novel	591	6	NA	NA	-89	-4	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	61.8143543200121	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGACATTTTCTTTTCAT	7132	False	NA	NA	False	AATAAA	-18	NA	36978697	36853226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36853499_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245
ENSMUSG00000026117.11_4	chr1	+	1973	12	NNC	ENSMUSG00000026117.11	novel	1338	6	NA	NA	305	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.0288908414713	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTATTCTCATCTTCC	NA	False	NA	2	True	AATAAA	-15	NA	36810377	36821897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_36810664_36810869_36811031_36817233_36817373_36817460_36817546_36817627_36817672_36817831_36817884_36818197_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
ENSMUSG00000026117.11_9	chr1	+	1187	6	FSM	ENSMUSG00000026117.11	ENSMUST00000190128.2	1338	6	152	-1	152	1	multi-exon	FALSE	canonical	3	25	junction_2	6.93974062915899	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTATTCTCATCTTCC	NA	False	NA	2	True	AATAAA	-15	NA	36818216	36821897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
ENSMUSG00000026121.14_0	chr1	-	3935	16	NIC	ENSMUSG00000026121.14	novel	3892	16	NA	NA	18	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	4.73568016938081	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGATATTTTGACTCAA	NA	False	NA	NA	False	AATAAA	-28	NA	36597313	36587726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36589450_36589586_36589658_36589748_36589910_36590806_36590920_36591007_36591231_36591332_36591478_36591799_36591976_36592059_36592212_36592304_36592422_36592551_36592649_36592796_36592896_36593006_36593070_36593332_36593482_36595012_36595159_36595883_36596167_36597096
ENSMUSG00000026121.14_1	chr1	-	3651	15	FSM	ENSMUSG00000026121.14	ENSMUST00000114991.8	3773	15	98	24	-1	-24	multi-exon	FALSE	canonical	2	8	junction_10	2.77102353446726	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAATTTAACCCTGCC	NA	False	NA	NA	False	AATAAA	-8	NA	36597332	36587746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36589450_36589586_36589658_36589748_36589910_36590806_36590920_36591007_36591231_36591332_36591478_36591799_36591976_36592059_36592212_36592304_36592422_36592551_36592649_36592796_36592896_36593006_36593070_36593332_36593482_36595012_36595159_36597096
ENSMUSG00000026121.14_2	chr1	-	3638	15	FSM	ENSMUSG00000026121.14	ENSMUST00000191677.6	3779	15	111	30	12	-27	multi-exon	FALSE	canonical	1	1	junction_14	3.99042220670383	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAATGAAATTTAACCCT	NA	False	NA	NA	False	AATAAA	-5	NA	36597319	36587749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36589450_36589586_36589658_36589748_36589910_36590806_36590920_36591007_36591231_36591332_36591478_36591799_36591976_36592059_36592212_36592304_36592422_36592551_36592649_36592796_36592896_36593006_36593070_36593332_36593482_36595012_36595162_36597096
ENSMUSG00000026123.12_0	chr1	+	3290	8	FSM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	-15	4	1	-1	multi-exon	FALSE	canonical	3	235	junction_4	21.365621823817	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACCGTGTCTCATTGTGA	NA	False	NA	14	True	ATTAAA	-14	NA	34889057	34918657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
ENSMUSG00000026123.12_16	chr1	+	3233	7	ISM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	11850	5	10005	-2	3prime_fragment	FALSE	canonical	3	235	junction_3	22.6764684689266	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAACCGTGTCTCATTGTG	NA	False	NA	13	True	ATTAAA	-13	NA	34900922	34918656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
ENSMUSG00000026123.12_23	chr1	+	2081	1	ISM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	27505	3	-159	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGTGTCTCATTGTGAC	NA	False	NA	15	True	ATTAAA	-15	NA	34916577	34918658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_34916600_34918700
ENSMUSG00000026124.5_0	chr1	+	549	3	ISM	ENSMUSG00000026124.5	ENSMUST00000027298.5	1040	6	1447	2	1447	-2	3prime_fragment	FALSE	canonical	3	21	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCCTCCTTGCTTGGCTG	NA	False	NA	NA	False	AATAAA	-14	NA	34576175	34583392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_34576328_34576406_34576517_34583105
ENSMUSG00000026126.16_1	chr1	+	1673	14	NIC	ENSMUSG00000026126.16	novel	1559	15	NA	NA	-35	-9	intron_retention	FALSE	canonical	0	0	junction_5	5.3659015466447	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAAATAGGGGCTTTG	402	False	NA	NA	False	AATAAA	-14	NA	34498807	34512856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34498998_34501782_34501892_34502187_34502446_34502546_34502586_34507373_34507443_34508920_34508984_34509280_34509424_34510573_34510641_34510721_34510800_34510892_34510983_34511183_34511273_34511843_34512050_34512415_34512491_34512659
ENSMUSG00000026126.16_2	chr1	+	4500	1	FSM	ENSMUSG00000026126.16	ENSMUST00000185610.2	1295	1	-13	-3192	-13	-2618	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGTCTCGAAAAACCAAAAA	424	False	NA	NA	False	NA	NA	NA	34498829	34503329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_34498800_34503300
ENSMUSG00000026126.16_4	chr1	+	850	7	ISM	ENSMUSG00000026126.16	ENSMUST00000027302.14	1559	15	11680	9	-1275	-9	3prime_fragment	FALSE	canonical	2	6	junction_1	3.74165738677394	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAAATAGGGGCTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	34510525	34512856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_34510641_34510721_34510800_34510892_34510983_34511183_34511273_34511843_34512050_34512415_34512491_34512659
ENSMUSG00000026127.14_0	chr1	+	1394	9	FSM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	41	4401	-6	441	multi-exon	FALSE	canonical	3	439	junction_1	56.5552826887109	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTAGCGTCTATTCCC	5654	False	NA	11	True	NA	NA	NA	34478972	34484036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438
ENSMUSG00000026127.14_1	chr1	+	5659	11	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	-7	-9	intron_retention	FALSE	non_canonical	0	0	junction_9	215.228808480649	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAAAGTGTGCTGAGG	5653	False	NA	43	True	AATAAA	-6	NA	34478971	34488428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438_34486993_34487037_34487947_34488029
ENSMUSG00000026127.14_22	chr1	+	1359	8	ISM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	189	4401	-1	441	3prime_fragment	FALSE	canonical	3	463	junction_5	50.0342739672374	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTAGCGTCTATTCCC	5802	False	NA	11	True	NA	NA	NA	34479120	34484036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438
ENSMUSG00000026127.14_6	chr1	+	5735	10	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	-4	-13	intron_retention	TRUE	non_canonical	0	0	junction_9	172.795604653748	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCCAGAAAAAAAGTGTGCT	5656	False	NA	39	True	AATAAA	-2	NA	34478974	34488424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438_34487006_34487050
ENSMUSG00000026131.21_18	chr1	+	8231	42	NIC	ENSMUSG00000026131.21	novel	16340	84	NA	NA	-8066	-60	combination_of_known_junctions	TRUE	canonical	3	43	junction_1	35.6811679542503	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34267610	34347425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34268328_34281699_34281862_34283424_34283596_34286729_34286897_34288559_34288720_34288884_34289212_34289690_34289776_34290776_34291019_34291891_34292099_34295312_34295433_34295622_34295731_34296802_34297022_34299244_34299449_34301100_34301333_34302344_34302572_34303605_34303729_34303830_34303933_34305937_34306040_34307309_34307484_34307815_34307972_34309908_34310107_34310435_34310565_34313248_34313420_34314285_34314442_34314753_34314961_34317100_34317221_34321503_34321674_34323339_34323500_34326267_34326463_34326971_34327101_34328604_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ENSMUSG00000026131.21_25	chr1	+	6710	37	NIC	ENSMUSG00000026131.21	novel	16340	84	NA	NA	-7890	-62	combination_of_known_junctions	FALSE	canonical	3	49	junction_3	32.423366440856	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34289026	34347423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34289212_34289690_34289776_34290776_34291019_34291891_34292099_34295312_34295433_34295622_34295731_34296802_34297022_34299244_34299449_34301100_34301333_34302344_34302572_34303605_34303729_34303830_34303933_34305937_34306040_34307309_34307484_34307815_34307972_34309908_34310107_34310435_34310565_34313248_34313420_34314285_34314442_34314753_34314961_34317100_34317221_34321503_34321674_34323339_34323500_34326267_34326463_34326971_34327101_34328604_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ENSMUSG00000026131.21_40	chr1	+	5034	28	NIC	ENSMUSG00000026131.21	novel	5729	32	NA	NA	5504	-60	combination_of_known_junctions	FALSE	canonical	3	65	junction_3	26.9306379289325	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34302420	34347425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34302572_34303605_34303729_34303830_34303933_34305937_34306040_34307309_34307484_34307815_34307972_34309908_34310107_34310435_34310565_34313248_34313420_34314285_34314442_34314753_34314961_34317100_34317221_34321503_34321674_34323339_34323500_34326267_34326463_34326971_34327101_34328604_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ENSMUSG00000026131.21_41	chr1	+	4868	27	NIC	ENSMUSG00000026131.21	novel	5729	32	NA	NA	-6032	-62	combination_of_known_junctions	FALSE	canonical	3	65	junction_2	26.8944903180457	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34303618	34347423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34303729_34303830_34303933_34305937_34306040_34307309_34307484_34307815_34307972_34309908_34310107_34310435_34310565_34313248_34313420_34314285_34314442_34314753_34314961_34317100_34317221_34321503_34321674_34323339_34323500_34326267_34326463_34326971_34327101_34328604_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ENSMUSG00000026131.21_49	chr1	+	4630	25	NIC	ENSMUSG00000026131.21	novel	5729	32	NA	NA	-3686	-61	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	24.4784131089688	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34305964	34347424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34306040_34307309_34307484_34307815_34307972_34309908_34310107_34310435_34310565_34313248_34313420_34314285_34314442_34314753_34314961_34317100_34317221_34321503_34321674_34323339_34323500_34326267_34326463_34326971_34327101_34328604_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ENSMUSG00000026131.21_52	chr1	+	4617	23	NIC	ENSMUSG00000026131.21	novel	5729	32	NA	NA	-1766	-2	combination_of_known_junctions	FALSE	canonical	3	93	junction_6	22.1682149048162	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACGTATGGAATACTTGG	109	False	NA	11	True	AATAAA	-12	NA	34307884	34347729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34307972_34309908_34310107_34310435_34310565_34313248_34313420_34314285_34314442_34314753_34314961_34317100_34317221_34321503_34321674_34323339_34323500_34326267_34326463_34326971_34327101_34328604_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ENSMUSG00000026131.21_72	chr1	+	2561	12	NIC	ENSMUSG00000026131.21	novel	5729	32	NA	NA	-3901	-60	combination_of_known_junctions	FALSE	canonical	3	119	junction_1	16.6376055174827	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34328634	34347425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ENSMUSG00000026131.21_74	chr1	+	2393	11	NIC	ENSMUSG00000026131.21	novel	5729	32	NA	NA	-3044	-62	combination_of_known_junctions	FALSE	canonical	3	119	junction_3	15.9862440867141	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34329491	34347423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ENSMUSG00000026131.21_75	chr1	+	2221	10	NIC	ENSMUSG00000026131.21	novel	5729	32	NA	NA	-1631	-60	combination_of_known_junctions	FALSE	canonical	3	119	junction_2	16.7862377493522	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34330904	34347425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ENSMUSG00000026131.21_76	chr1	+	2057	9	NIC	ENSMUSG00000026131.21	novel	5729	32	NA	NA	-64	-60	combination_of_known_junctions	FALSE	canonical	3	119	junction_1	17.7974717305577	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34332471	34347425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
ENSMUSG00000026131.21_82	chr1	+	1846	4	ISM	ENSMUSG00000026131.21	ENSMUST00000182018.8	5729	32	44601	60	7991	-60	3prime_fragment	FALSE	canonical	3	126	junction_3	20.0055547841649	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34341517	34347425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_34342114_34342501_34342613_34345608_34345733_34346410
ENSMUSG00000026131.21_83	chr1	+	2443	2	ISM	ENSMUSG00000026131.21	ENSMUST00000182018.8	5729	32	47388	60	10778	-60	3prime_fragment	FALSE	canonical	3	126	junction_1	0	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34344304	34347425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_34345733_34346410
ENSMUSG00000026131.21_84	chr1	+	281	1	ISM	ENSMUSG00000026131.21	ENSMUST00000097786.10	17212	93	296251	308	13618	-60	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34347144	34347425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_34347100_34347400
ENSMUSG00000026134.12_0	chr1	-	1948	14	FSM	ENSMUSG00000026134.12	ENSMUST00000027312.11	1975	14	23	4	23	-4	multi-exon	FALSE	canonical	3	132	junction_10	82.0868352460372	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATATCTGTGCAAGTGGG	NA	False	NA	-6	True	AATAAA	-14	NA	33708853	33492894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708704
ENSMUSG00000026134.12_3	chr1	-	1155	8	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	253	-2	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	107.409572788139	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGTGCAAGTGGGAG	8830	False	NA	-4	True	AATAAA	-16	NA	33660970	33492892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33660914
ENSMUSG00000026134.12_7	chr1	-	1371	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-14680	-2	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_9	88.3062851670253	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGTGCAAGTGGGAG	2986	False	NA	-4	True	AATAAA	-16	NA	33677085	33492892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33677047
ENSMUSG00000026135.18_0	chr1	-	2763	3	ISM	ENSMUSG00000026135.18	ENSMUST00000127921.2	5020	8	14229	-422	14229	-21	3prime_fragment	FALSE	canonical	3	42	junction_2	6.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGACTTGTTTGGATCCC	NA	False	NA	-7	True	NA	NA	NA	74610593	74605605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_74606507_74607709_74607816_74608837
ENSMUSG00000026135.18_1	chr1	-	3991	4	ISM	ENSMUSG00000026135.18	ENSMUST00000127921.2	5020	8	12051	-427	12051	-16	3prime_fragment	FALSE	canonical	3	42	junction_2	6.64997911442	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTTTGGATCCCTGTCC	NA	False	NA	-2	True	NA	NA	NA	74612771	74605600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697
ENSMUSG00000026135.18_13	chr1	-	4246	5	ISM	ENSMUSG00000026135.18	ENSMUST00000127921.2	5020	8	9485	-179	9485	-7	3prime_fragment	FALSE	canonical	3	42	junction_2	5.78791845139511	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAACACTGACTTCTTG	NA	False	NA	NA	False	TATAAA	-13	NA	74615337	74605848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938
ENSMUSG00000026135.18_14	chr1	-	5875	10	NIC	ENSMUSG00000026135.18	novel	7473	9	NA	NA	-36	-10	combination_of_known_junctions	FALSE	canonical	1	4	junction_9	18.891503087073	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAATTGCATGTGTCCTT	NA	False	NA	-72	True	NA	NA	NA	74627147	74605670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74618778_74624542_74624857_74626722_74626911_74627083
ENSMUSG00000026135.18_17	chr1	-	5691	8	NIC	ENSMUSG00000026135.18	novel	6480	9	NA	NA	274	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	16.5689653341691	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAACACTGACTTCTTG	NA	False	NA	NA	False	TATAAA	-13	NA	74626837	74605848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_74606507_74607709_74607816_74608837_74611743_74614938_74615764_74617281_74617447_74618483_74619087_74624542_74624857_74626722
ENSMUSG00000026135.18_18	chr1	-	6021	10	NIC	ENSMUSG00000026135.18	novel	6480	9	NA	NA	-31	-7	combination_of_known_junctions	FALSE	canonical	3	10	junction_9	14.8457085290125	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAACACTGACTTCTTG	NA	False	NA	NA	False	TATAAA	-13	NA	74627218	74605848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74619087_74624542_74624857_74626722_74626911_74627139
ENSMUSG00000026135.18_19	chr1	-	5827	7	ISM	ENSMUSG00000026135.18	ENSMUST00000127921.2	5020	8	5516	-346	5516	-21	3prime_fragment	FALSE	canonical	3	27	junction_6	9.95685135416256	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACAATTGTACTTAATTG	NA	False	NA	-83	True	NA	NA	NA	74619306	74605681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483
ENSMUSG00000026135.18_2	chr1	-	6183	9	FSM	ENSMUSG00000026135.18	ENSMUST00000027315.14	6480	9	36	261	36	-4	multi-exon	FALSE	canonical	3	25	junction_7	11.659223816361	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACTGACTTCTTGAGT	NA	False	NA	NA	False	TATAAA	-16	NA	74627148	74605845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74619087_74624542_74624857_74626722
ENSMUSG00000026135.18_3	chr1	-	6068	9	FSM	ENSMUSG00000026135.18	ENSMUST00000113737.8	7473	9	24	1381	21	-6	multi-exon	FALSE	canonical	1	5	junction_7	16.2307578381294	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCATGTGTCCTTGTGT	NA	False	NA	-68	True	NA	NA	NA	74627163	74605666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74618778_74624542_74624857_74626722
ENSMUSG00000026135.18_4	chr1	-	4960	6	ISM	ENSMUSG00000026135.18	ENSMUST00000127921.2	5020	8	7510	-436	7510	-7	3prime_fragment	FALSE	canonical	3	42	junction_2	5.54977477020464	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCCCTGTCCTATGGTTCC	NA	False	NA	7	True	NA	NA	NA	74617312	74605591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281
ENSMUSG00000026135.18_6	chr1	-	6243	10	NIC	ENSMUSG00000026135.18	novel	6480	9	NA	NA	-30	-21	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	16.1734426426033	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGACTTGTTTGGATCCC	NA	False	NA	-7	True	NA	NA	NA	74627141	74605605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74619087_74624542_74624857_74626722_74626911_74627083
ENSMUSG00000026135.18_7	chr1	-	5786	8	NIC	ENSMUSG00000026135.18	novel	7473	9	NA	NA	15	0	intron_retention	FALSE	canonical	2	5	junction_6	16.630436812406	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCCTTGTGTCTAGTG	NA	False	NA	-62	True	NA	NA	NA	74627169	74605660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74624542_74624857_74626722
ENSMUSG00000026142.16_0	chr1	+	3484	7	FSM	ENSMUSG00000026142.16	ENSMUST00000027322.14	3636	7	145	7	-45	-7	multi-exon	FALSE	canonical	3	170	junction_1	15.8893745069534	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAATCAGTGTGTTGCT	NA	False	NA	7	True	AATAAA	-13	NA	82294317	82423080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_82294370_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
ENSMUSG00000026142.16_16	chr1	+	3252	6	ISM	ENSMUSG00000026142.16	ENSMUST00000140020.2	3687	7	1453	4	1453	-4	3prime_fragment	FALSE	canonical	3	176	junction_3	13.1969693490589	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATCAGTGTGTTGCTCGA	1554	False	NA	10	True	AATAAA	-16	NA	82318222	82423083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
ENSMUSG00000026142.16_21	chr1	+	1813	1	ISM	ENSMUSG00000026142.16	ENSMUST00000027322.14	3636	7	127098	4	104501	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATCAGTGTGTTGCTCGA	NA	False	NA	10	True	AATAAA	-16	NA	82421270	82423083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_82421300_82423100
ENSMUSG00000026150.15_0	chr1	+	1694	8	FSM	ENSMUSG00000026150.15	ENSMUST00000073025.12	1706	8	8	4	2	-4	multi-exon	FALSE	canonical	3	146	junction_5	154.121870675152	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAAGCAATGTCTATGG	NA	False	NA	6	True	AATAAA	-6	NA	82702647	82730104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713136_82713229_82724803_82724864_82728240_82728326_82729305
ENSMUSG00000026150.15_1	chr1	+	1638	7	NIC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	326	junction_5	73.6809940818451	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAAGCAATGTCTATGG	NA	False	NA	6	True	AATAAA	-6	NA	82702640	82730104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
ENSMUSG00000026150.15_2	chr1	+	1698	8	FSM	ENSMUSG00000026150.15	ENSMUST00000160786.8	1645	8	-20	-33	1	-4	multi-exon	FALSE	canonical	3	146	junction_5	134.32947615198	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAAGCAATGTCTATGG	NA	False	NA	6	True	AATAAA	-6	NA	82702640	82730104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82724803_82724864_82728240_82728326_82729305
ENSMUSG00000026150.15_21	chr1	+	3666	3	FSM	ENSMUSG00000026150.15	ENSMUST00000162794.2	607	3	-2558	-501	2387	0	multi-exon	FALSE	canonical	3	223	junction_1	152.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAATGTCTATGGAAAG	3150	False	NA	10	True	AATAAA	-10	NA	82722085	82730108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_82724864_82728240_82728326_82729305
ENSMUSG00000026150.15_3	chr1	+	1857	9	FSM	ENSMUSG00000026150.15	ENSMUST00000078332.13	1894	9	30	7	1	-4	multi-exon	FALSE	canonical	3	24	junction_6	190.780264637095	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAAGCAATGTCTATGG	NA	False	NA	6	True	AATAAA	-6	NA	82702640	82730104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82719538_82719698_82724803_82724864_82728240_82728326_82729305
ENSMUSG00000026150.15_5	chr1	+	1641	7	NIC	ENSMUSG00000026150.15	novel	1706	8	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	164	junction_4	124.696520489636	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAAGCAATGTCTATGG	NA	False	NA	6	True	AATAAA	-6	NA	82702640	82730104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713136_82713229_82728240_82728326_82729305
ENSMUSG00000026153.16_0	chr1	-	5568	22	NIC	ENSMUSG00000026153.16	novel	5536	21	NA	NA	44	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_8	12.0657683733739	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTATTTCTCATGTTGA	NA	False	NA	-5	True	ATTAAA	-23	NA	24139370	24050763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_24051579_24053859_24053974_24059755_24059867_24060934_24061087_24063293_24063392_24063862_24063955_24065688_24065850_24067280_24069610_24069822_24069978_24071743_24071818_24083194_24083351_24085438_24085489_24088210_24088289_24092263_24092418_24093084_24093212_24094824_24094999_24096284_24096356_24096446_24096587_24106979_24107060_24124491_24124608_24125600_24125693_24139141
ENSMUSG00000026153.16_1	chr1	-	2505	8	ISM	ENSMUSG00000026153.16	ENSMUST00000188712.7	5122	21	57365	590	-75	-2	3prime_fragment	FALSE	canonical	3	41	junction_4	12.2989961428748	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTATTTCTCATGTTGA	NA	False	NA	-5	True	ATTAAA	-23	NA	24068242	24050763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_24051579_24053859_24053974_24059755_24059867_24060934_24061087_24063293_24063392_24063862_24063955_24065688_24065850_24067280
ENSMUSG00000026153.16_10	chr1	-	5541	22	NIC	ENSMUSG00000026153.16	novel	4976	22	NA	NA	-36	-3	combination_of_known_splicesites	FALSE	canonical	3	9	junction_20	16.6794508792302	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCGTGACTTGGCTGT	NA	False	NA	71	True	TATAAA	-14	NA	24139333	24050687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_24051579_24053859_24053974_24059755_24059867_24060934_24061087_24063293_24063392_24063862_24063955_24065688_24065850_24067280_24069610_24071743_24071818_24083194_24083351_24085438_24085489_24088210_24088289_24092263_24092418_24093084_24093212_24094824_24094999_24096284_24096356_24096446_24096587_24106979_24107060_24124491_24124608_24125600_24125693_24137711_24137801_24139141
ENSMUSG00000026153.16_16	chr1	-	5321	20	NIC	ENSMUSG00000026153.16	novel	5536	21	NA	NA	-36	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_19	15.966724400723	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACATTATTTCTCATGTT	NA	False	NA	-7	True	ATTAAA	-21	NA	24139333	24050765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_24051579_24053859_24053974_24059755_24059867_24060934_24061087_24063293_24063392_24063862_24063955_24065688_24065850_24067280_24069610_24069822_24069978_24071743_24071818_24083194_24083351_24085438_24085489_24088210_24088289_24092263_24092418_24093084_24093212_24094824_24094999_24096284_24096356_24096446_24096587_24106979_24107060_24139141
ENSMUSG00000026153.16_3	chr1	-	5375	21	NIC	ENSMUSG00000026153.16	novel	5536	21	NA	NA	-34	-1	combination_of_known_splicesites	FALSE	canonical	3	10	junction_8	13.6318560731839	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTATTTCTCATGTTGAC	NA	False	NA	-4	True	ATTAAA	-24	NA	24139331	24050762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_24051579_24053859_24053974_24059755_24059867_24060934_24061087_24063293_24063392_24063862_24063955_24065688_24065850_24067280_24069610_24071743_24071818_24083194_24083351_24085438_24085489_24088210_24088289_24092263_24092418_24093084_24093212_24094824_24094999_24096284_24096356_24096446_24096587_24106979_24107060_24124491_24124608_24125600_24125693_24139141
ENSMUSG00000026153.16_6	chr1	-	5002	22	NIC	ENSMUSG00000026153.16	novel	4976	22	NA	NA	22	-2	combination_of_known_junctions	FALSE	canonical	3	9	junction_8	13.5502759132153	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTATTTCTCATGTTGA	NA	False	NA	-5	True	ATTAAA	-23	NA	24139392	24050763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_24051579_24053859_24053974_24059755_24059867_24060934_24061087_24063293_24063392_24063862_24063955_24065688_24065850_24067280_24069022_24069822_24069978_24071743_24071818_24083194_24083351_24085438_24085489_24088210_24088289_24092263_24092418_24093084_24093212_24094824_24094999_24096284_24096356_24096446_24096587_24106979_24107060_24124491_24124608_24125600_24125693_24139141
ENSMUSG00000026153.16_9	chr1	-	5624	23	NIC	ENSMUSG00000026153.16	novel	4976	22	NA	NA	-40	-2	combination_of_known_junctions	FALSE	canonical	3	9	junction_21	15.3859439985746	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTATTTCTCATGTTGA	NA	False	NA	-5	True	ATTAAA	-23	NA	24139337	24050763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_24051579_24053859_24053974_24059755_24059867_24060934_24061087_24063293_24063392_24063862_24063955_24065688_24065850_24067280_24069610_24069822_24069978_24071743_24071818_24083194_24083351_24085438_24085489_24088210_24088289_24092263_24092418_24093084_24093212_24094824_24094999_24096284_24096356_24096446_24096587_24106979_24107060_24124491_24124608_24125600_24125693_24137711_24137801_24139141
ENSMUSG00000026154.5_0	chr1	-	642	3	FSM	ENSMUSG00000026154.5	ENSMUST00000027338.4	683	3	35	6	9	-6	multi-exon	FALSE	canonical	3	315	junction_1	0.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTAGATTTATTATTTTA	NA	False	NA	-7	True	AATAAA	-17	NA	24044702	24035025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_24035442_24042237_24042388_24044626
ENSMUSG00000026154.5_1	chr1	-	7442	2	FSM	ENSMUSG00000026154.5	ENSMUST00000155767.3	426	2	5	-7021	5	-6	multi-exon	FALSE	canonical	3	316	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTAGATTTATTATTTTA	NA	False	NA	-7	True	AATAAA	-17	NA	24044706	24035025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_24042388_24044626
ENSMUSG00000026154.5_3	chr1	-	94	1	ISM	ENSMUSG00000026154.5	ENSMUST00000027338.4	683	3	9618	6	9592	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTAGATTTATTATTTTA	NA	False	NA	-7	True	AATAAA	-17	NA	24035119	24035025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_24035000_24035100
ENSMUSG00000026155.14_0	chr1	-	2346	10	FSM	ENSMUSG00000026155.14	ENSMUST00000027339.14	2289	10	-62	5	-62	-5	multi-exon	FALSE	canonical	3	380	junction_6	35.0269737329517	559	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACCTTTTTATTTGTGG	NA	False	NA	-7	True	ATTAAA	-12	NA	23961460	23884710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_23885645_23887344_23887653_23888383_23888550_23892503_23892632_23898103_23898195_23905297_23905379_23915454_23915531_23916789_23916876_23930940_23931075_23961118
ENSMUSG00000026158.12_0	chr1	-	2217	7	FSM	ENSMUSG00000026158.12	ENSMUST00000027343.6	4844	7	-39	2666	-39	634	multi-exon	FALSE	canonical	3	39	junction_5	10.9201648339208	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCTCAGTATTGTTTAG	NA	False	NA	NA	False	AATAAA	-2	NA	23422295	23408170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_23409530_23414810_23414957_23415068_23415136_23415251_23415331_23417806_23417886_23418052_23418140_23421895
ENSMUSG00000026158.12_2	chr1	-	2435	1	ISM	ENSMUSG00000026158.12	ENSMUST00000027343.6	4844	7	14284	33	11910	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAACCTGTCATAGCC	NA	False	NA	NA	False	AATAAA	-10	NA	23407972	23405537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_23405500_23408000
ENSMUSG00000026158.12_3	chr1	-	1783	7	NNC	ENSMUSG00000026158.12	novel	4844	7	NA	NA	-45	191	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_5	17.2046505340853	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTCTGTATATAACAGTC	NA	False	NA	NA	False	AATAAA	-25	NA	23422301	23408613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_23409530_23414810_23414957_23415068_23415136_23415251_23415331_23417806_23417889_23418052_23418140_23421895
ENSMUSG00000026159.14_0	chr1	+	3237	13	FSM	ENSMUSG00002074851.1_ENSMUSG00000026159.14	ENSMUST00000186302.7	2352	13	-196	-689	-5	-17	multi-exon	FALSE	canonical	3	369	junction_12	56.7364154078607	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATCTTTGAACAATACCC	NA	False	NA	-3	True	ATTAAA	-3	NA	82817198	82874085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863831_82863909_82864095_82864189_82871144_82871304_82872196_82872289_82872719
ENSMUSG00000026159.14_13	chr1	+	3152	12	FSM	ENSMUSG00000026159.14	ENSMUST00000113444.8	3142	12	-19	9	-5	-9	multi-exon	FALSE	canonical	3	50	junction_9	136.075392326071	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAATACCCCTAAGTTA	NA	False	NA	5	True	ATTAAA	-11	NA	82817198	82874093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863831_82863909_82871144_82871304_82872196_82872289_82872719
ENSMUSG00000026159.14_15	chr1	+	2474	13	FSM	ENSMUSG00002074851.1_ENSMUSG00000026159.14	ENSMUST00000063380.11	2896	13	-190	612	-2	-8	multi-exon	FALSE	canonical	3	56	junction_7	129.211390106807	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATGCTATTGTTTTTG	NA	False	NA	7	True	AATAAA	-7	NA	82817201	82873388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860964_82861083_82863831_82863909_82864095_82864189_82871144_82871304_82872196_82872289_82872719
ENSMUSG00000026159.14_4	chr1	+	3138	13	FSM	ENSMUSG00000026159.14	ENSMUST00000189220.7	8044	13	-5	4911	-5	-8	multi-exon	FALSE	canonical	3	119	junction_11	113.067826251915	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTTATATGTAGTAAT	NA	False	NA	-96	True	AATGAA	-7	NA	82817198	82873992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863831_82863909_82864095_82864189_82871144_82871304_82872202_82872289_82872719
ENSMUSG00000026159.14_6	chr1	+	3244	13	Fusion	ENSMUSG00002074851.1_ENSMUSG00000026159.14	novel	2352	13	NA	NA	-5	-7	multi-exon	FALSE	canonical	3	110	junction_8	115.942843916973	107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATACCCCTAAGTTATG	NA	False	NA	7	True	ATTAAA	-13	NA	82817198	82874095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863834_82863909_82864095_82864189_82871144_82871304_82872196_82872289_82872719
ENSMUSG00000026159.14_73	chr1	+	4511	1	ISM	ENSMUSG00000026159.14	ENSMUST00000189220.7	8044	13	57006	183	56416	-183	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGATGGCCTCTTCAAT	NA	False	NA	7	True	AATAAA	-20	NA	82874209	82878720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_82874200_82878700
ENSMUSG00000026162.9_1	chr1	-	1925	7	NIC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	-33	-213	intron_retention	FALSE	canonical	3	10	junction_6	9.3526585643988	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTGAGGTTACCTGTGA	NA	False	NA	-6	True	AATAAA	-19	NA	75101877	75006510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_75006928_75007327_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097475_75101779
ENSMUSG00000026162.9_2	chr1	-	1391	8	FSM	ENSMUSG00000026162.9	ENSMUST00000152855.3	1586	8	-22	217	-22	-217	multi-exon	FALSE	canonical	3	10	junction_7	8.89622712968015	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGACTGTTGAGGTTACCT	NA	False	NA	-10	True	AATAAA	-15	NA	75101866	75006514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097475_75101779
ENSMUSG00000026162.9_5	chr1	-	1319	8	NNC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	-26	-215	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	8.89622712968015	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTGTTGAGGTTACCTGT	NA	False	NA	-8	True	AATAAA	-17	NA	75101870	75006512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097397_75101779
ENSMUSG00000026170.7_4	chr1	+	2181	9	FSM	ENSMUSG00000026170.7	ENSMUST00000027356.7	1892	9	-298	9	-298	-9	multi-exon	TRUE	canonical	1	2	junction_5	1.98431348329844	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCAAGTTTTTGGGGG	NA	False	NA	NA	False	AATAAA	-5	NA	74752434	74777042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74753051_74771077_74771269_74774435_74774636_74774712_74774911_74775022_74775196_74775839_74776007_74776175_74776258_74776337_74776551_74776701
ENSMUSG00000026171.13_0	chr1	-	1448	10	FSM	ENSMUSG00000026171.13	ENSMUST00000027357.12	1479	10	23	8	-2	-3	multi-exon	FALSE	canonical	3	94	junction_3	8.63384096891663	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATCTAGCCTATGTGGTA	NA	False	NA	NA	False	AATAAA	-22	NA	74640533	74632914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
ENSMUSG00000026171.13_13	chr1	-	1534	9	NIC	ENSMUSG00000026171.13	novel	1451	10	NA	NA	1	-6	intron_retention	FALSE	canonical	3	22	junction_3	29.3233588628588	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCATCTAGCCTATGTG	NA	False	NA	NA	False	AATAAA	-19	NA	74640530	74632917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637952_74638224_74638300_74640483
ENSMUSG00000026171.13_15	chr1	-	1546	9	NIC	ENSMUSG00000026171.13	novel	1479	10	NA	NA	-2	0	intron_retention	FALSE	canonical	3	94	junction_3	8.63767185067828	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGCCTATGTGGTATGA	NA	False	NA	NA	False	AATAAA	-25	NA	74640533	74632911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637952_74638224_74638300_74640483
ENSMUSG00000026171.13_3	chr1	-	1444	10	FSM	ENSMUSG00000026171.13	ENSMUST00000113721.8	1451	10	3	4	-2	-4	multi-exon	FALSE	canonical	3	22	junction_3	27.6463557752974	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATCTAGCCTATGTGGT	NA	False	NA	NA	False	AATAAA	-21	NA	74640533	74632915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
ENSMUSG00000026171.13_9	chr1	-	3897	8	ISM	ENSMUSG00000026171.13	ENSMUST00000113721.8	1451	10	5	6	0	-6	intron_retention	FALSE	canonical	3	22	junction_3	28.8139705344332	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCATCTAGCCTATGTG	NA	False	NA	NA	False	AATAAA	-19	NA	74640531	74632917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851
ENSMUSG00000026172.13_0	chr1	+	1448	7	ISM	ENSMUSG00000026172.13	ENSMUST00000113732.2	1679	8	1109	3	-783	-3	3prime_fragment	FALSE	canonical	3	106	junction_1	16.0381489649592	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGCAGGTACCTACAAGAT	2325	False	NA	10	True	AATAAA	-11	NA	74628641	74631345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ENSMUSG00000026172.13_1	chr1	+	1518	8	FSM	ENSMUSG00000026172.13	ENSMUST00000113733.10	1488	8	32	-62	21	-3	multi-exon	FALSE	canonical	3	89	junction_1	21.8136822818587	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGCAGGTACCTACAAGAT	1163	False	NA	10	True	AATAAA	-11	NA	74627479	74631345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74627553_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ENSMUSG00000026172.13_5	chr1	+	1569	8	FSM	ENSMUSG00000026172.13	ENSMUST00000027358.11	1890	8	63	258	-11	-4	multi-exon	FALSE	canonical	3	21	junction_1	42.4562199476696	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGCAGGTACCTACAAGA	1205	False	NA	9	True	AATAAA	-10	NA	74627521	74631344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74627647_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ENSMUSG00000026174.10_2	chr1	+	2989	8	FSM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	273	6	271	-6	multi-exon	FALSE	canonical	3	963	junction_5	46.4318680148337	1484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTTTGTTTTGTTT	1133	False	NA	32	True	AATAAA	-17	NA	74545489	74569995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
ENSMUSG00000026174.10_36	chr1	+	1492	1	ISM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	23287	6	5818	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTTTGTTTTGTTT	NA	False	NA	32	True	AATAAA	-17	NA	74568503	74569995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74568500_74570000
ENSMUSG00000026175.13_1	chr1	+	2588	16	ISM	ENSMUSG00000026175.13	ENSMUST00000027366.13	3124	20	10266	44	589	-44	3prime_fragment	FALSE	canonical	0	0	junction_5	2.74388208363422	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAAGGCTTTAATGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	74458800	74474674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74458837_74458953_74459065_74460411_74460615_74460719_74460799_74460937_74461037_74462085_74462240_74462833_74462935_74463021_74463160_74464695_74464855_74465710_74465891_74466398_74466545_74466637_74466783_74467225_74467415_74469775_74469845_74471449_74471591_74474036
ENSMUSG00000026176.14_0	chr1	+	2274	7	FSM	ENSMUSG00000026176.14	ENSMUST00000027367.14	2876	7	310	292	24	-289	multi-exon	FALSE	canonical	3	15	junction_2	3.53160335006952	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCGCCTCTGTGGTTTTT	3620	False	NA	13	True	ACTAAA	-22	NA	74430977	74436152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74431124_74432436_74432586_74432955_74433061_74433177_74433235_74433798_74433892_74433995_74434182_74434614
ENSMUSG00000026176.14_10	chr1	+	738	1	ISM	ENSMUSG00000026176.14	ENSMUST00000027367.14	2876	7	4747	292	4094	-289	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCGCCTCTGTGGTTTTT	3056	False	NA	13	True	ACTAAA	-22	NA	74435414	74436152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74435400_74436200
ENSMUSG00000026176.14_2	chr1	+	2226	7	NIC	ENSMUSG00000026176.14	novel	393	4	NA	NA	-22	-301	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	7.90393713425292	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCCCTCCTATTCCGCC	3941	False	NA	1	True	ACTAAA	-10	NA	74431298	74436140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_74431409_74432436_74432586_74432955_74433061_74433177_74433235_74433798_74433892_74433995_74434182_74434614
ENSMUSG00000026176.14_6	chr1	+	3093	6	ISM	ENSMUSG00000026176.14	ENSMUST00000027367.14	2876	7	803	293	150	-290	3prime_fragment	FALSE	canonical	3	15	junction_1	3.84707681233427	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTCCGCCTCTGTGGTTTT	4113	False	NA	12	True	ACTAAA	-21	NA	74431470	74436151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74432586_74432955_74433061_74433177_74433235_74433798_74433892_74433995_74434182_74434614
ENSMUSG00000026176.14_7	chr1	+	2074	3	ISM	ENSMUSG00000026176.14	ENSMUST00000141175.2	2957	6	2588	289	2221	-289	3prime_fragment	FALSE	canonical	3	20	junction_1	3.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCGCCTCTGTGGTTTTT	1183	False	NA	13	True	ACTAAA	-22	NA	74433541	74436152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74433892_74433995_74434182_74434614
ENSMUSG00000026176.14_9	chr1	+	1951	2	ISM	ENSMUSG00000026176.14	ENSMUST00000141175.2	2957	6	3080	24	2713	-24	3prime_fragment	FALSE	canonical	3	27	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAATAAAAAATACACA	1675	False	NA	NA	False	NA	NA	NA	74434033	74436417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74434182_74434614
ENSMUSG00000026177.12_0	chr1	+	2269	15	FSM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	20	26	-2	-15	multi-exon	FALSE	canonical	2	3	junction_1	14.5525087254426	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAATCTTAAAA	4991	False	NA	NA	False	NA	NA	NA	74414381	74425195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74414481_74414876_74415011_74415951_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
ENSMUSG00000026177.12_1	chr1	+	2411	15	NIC	ENSMUSG00000026177.12	novel	2315	15	NA	NA	3	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	14.8311929970008	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTAAAAAAAAAATCT	4974	False	NA	NA	False	NA	NA	NA	74414364	74425204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_74414481_74414760_74415011_74415951_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
ENSMUSG00000026177.12_2	chr1	+	2295	14	ISM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	399	17	30	-6	3prime_fragment	FALSE	canonical	2	4	junction_8	14.2151681635203	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTAAAAAAAAAATCT	5370	False	NA	NA	False	NA	NA	NA	74414760	74425204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74415011_74415951_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
ENSMUSG00000026177.12_5	chr1	+	2185	13	ISM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	1457	10	3	0	3prime_fragment	FALSE	canonical	2	4	junction_7	13.8774397254441	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCTTAAAGAG	6428	False	NA	NA	False	NA	NA	NA	74415818	74425211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
ENSMUSG00000026177.12_9	chr1	+	1133	5	ISM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	8447	10	50	0	3prime_fragment	FALSE	canonical	3	29	junction_1	7.87400787401181	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCTTAAAGAG	4371	False	NA	NA	False	NA	NA	NA	74422808	74425211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
ENSMUSG00000026179.15_0	chr1	+	606	3	FSM	ENSMUSG00000026179.15	ENSMUST00000113805.8	740	3	127	7	2	-7	multi-exon	FALSE	canonical	3	1381	junction_1	89	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGAAAGGAGGCCAGGTTG	NA	False	NA	-1	True	AATAAA	-17	NA	74324215	74326606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74324297_74325000_74325170_74326250
ENSMUSG00000026179.15_1	chr1	+	2925	10	FSM	ENSMUSG00000026179.15	ENSMUST00000027370.13	2937	10	12	0	2	0	multi-exon	FALSE	canonical	3	54	junction_2	408.826988068106	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAGGTCTGAGCTCTCA	NA	False	NA	3	True	NA	NA	NA	74324215	74392843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74324297_74325000_74325170_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
ENSMUSG00000026179.15_9	chr1	+	2841	9	FSM	ENSMUSG00000026179.15	ENSMUST00000087225.6	2859	9	14	4	14	-2	multi-exon	FALSE	canonical	3	63	junction_1	11.428445869846	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCAAGGTCTGAGCTCT	9377	False	NA	1	True	NA	NA	NA	74371782	74392841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74371951_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
ENSMUSG00000026181.14_0	chr16	+	4806	8	FSM	ENSMUSG00000026181.14	ENSMUST00000027373.12	4922	8	110	6	5	-6	multi-exon	FALSE	canonical	3	74	junction_7	6.62093155786084	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTCCTGAGTGCCACTT	NA	False	NA	29	True	AATAAA	-11	NA	16714442	16745222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16714489_16721187_16721456_16728802_16728946_16731897_16732101_16733023_16733213_16735523_16735668_16740326_16740421_16741503
ENSMUSG00000026181.14_3	chr16	+	4763	7	ISM	ENSMUSG00000026181.14	ENSMUST00000027373.12	4922	8	6852	6	6747	-6	3prime_fragment	FALSE	canonical	3	74	junction_6	6.91415617089718	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTCCTGAGTGCCACTT	NA	False	NA	29	True	AATAAA	-11	NA	16721184	16745222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_16721456_16728802_16728946_16731897_16732101_16733023_16733213_16735523_16735668_16740326_16740421_16741503
ENSMUSG00000026181.14_7	chr16	+	2427	1	ISM	ENSMUSG00000026181.14	ENSMUST00000027373.12	4922	8	28463	6	28358	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTCCTGAGTGCCACTT	NA	False	NA	29	True	AATAAA	-11	NA	16742795	16745222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_16742800_16745200
ENSMUSG00000026185.9_0	chr1	-	1878	4	FSM	ENSMUSG00000026185.9	ENSMUST00000027377.9	6006	4	734	3394	125	-3261	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGGCCTGCGTCCAGGC	NA	False	NA	NA	False	AATACA	-13	NA	72913309	72900484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_72901668_72902301_72902422_72903009_72903240_72912964
ENSMUSG00000026187.10_1	chr1	+	2456	21	FSM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	88	5	88	-5	multi-exon	FALSE	canonical	3	464	junction_5	74.8852455427636	901	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCATTTCTTGTGTGAAG	410	False	NA	17	True	TATAAA	-23	NA	72346673	72434106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
ENSMUSG00000026189.14_1	chr1	-	1160	8	FSM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	23	3	22	-3	multi-exon	FALSE	canonical	1	70	junction_5	66.3254191429636	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCGGTTATCTTTTAAGG	NA	False	NA	-9	True	AATAAA	-16	NA	72323450	72298333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
ENSMUSG00000026189.14_2	chr1	-	878	6	NIC	ENSMUSG00000026189.14	novel	1120	8	NA	NA	2	-3	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	98.9432160382914	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCGGTTATCTTTTAAGG	NA	False	NA	-9	True	AATAAA	-16	NA	72323416	72298333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72316445_72316580_72323251
ENSMUSG00000026189.14_6	chr1	-	1474	6	ISM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	5	7568	4	256	5prime_fragment	FALSE	canonical	1	70	junction_3	74.7786065663168	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTTGGTAGGAGAAC	NA	False	NA	NA	False	AATAAA	-13	NA	72323468	72305898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
ENSMUSG00000026192.14_0	chr1	+	2575	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	42	228	13	-228	multi-exon	TRUE	canonical	3	576	junction_4	38.3577313661217	1059	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTTTGTGGTTACTTTT	NA	False	NA	13	True	AATAAA	-13	NA	71596350	71618562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
ENSMUSG00000026193.16_0	chr1	-	8312	46	FSM	ENSMUSG00000026193.16	ENSMUST00000055226.13	8315	46	4	-1	1	0	multi-exon	TRUE	canonical	3	1514	junction_37	371.719226311845	1419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	NA	False	NA	-9	True	AATAAA	-15	NA	71692330	71624681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
ENSMUSG00000026193.16_10	chr1	-	2609	13	ISM	ENSMUSG00000026193.16	ENSMUST00000188894.7	8043	45	50758	3	-38	0	3prime_fragment	FALSE	canonical	3	2104	junction_10	253.313157091288	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	9979	False	NA	-9	True	AATAAA	-15	NA	71641573	71624681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468
ENSMUSG00000026193.16_18	chr1	-	4178	22	ISM	ENSMUSG00000026193.16	ENSMUST00000055226.13	8315	46	39292	-1	-4316	0	3prime_fragment	TRUE	canonical	3	1634	junction_21	308.530053075537	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	177	False	NA	-9	True	AATAAA	-15	NA	71653042	71624681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921
ENSMUSG00000026193.16_22	chr1	-	2838	14	ISM	ENSMUSG00000026193.16	ENSMUST00000188894.7	8043	45	49367	3	-961	0	3prime_fragment	FALSE	canonical	3	2104	junction_10	250.191453318473	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	9962	False	NA	-9	True	AATAAA	-15	NA	71642964	71624681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818
ENSMUSG00000026193.16_3	chr1	-	8039	45	FSM	ENSMUSG00000026193.16	ENSMUST00000188894.7	8043	45	1	3	1	0	multi-exon	FALSE	canonical	3	355	junction_21	441.858289425336	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	NA	False	NA	-9	True	AATAAA	-15	NA	71692330	71624681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
ENSMUSG00000026193.16_46	chr1	-	3670	19	ISM	ENSMUSG00000026193.16	ENSMUST00000188894.7	8043	45	43604	3	-1	0	3prime_fragment	FALSE	canonical	3	2032	junction_18	268.114017804385	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	4492	False	NA	-9	True	AATAAA	-15	NA	71648727	71624681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571
ENSMUSG00000026196.8_0	chr1	-	1531	1	ISM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	74080	38	74080	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGTATCTTCTGTAAAAA	746	False	NA	-6	True	ATTAAA	-16	NA	71068225	71066694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_71066700_71068200
ENSMUSG00000026196.8_14	chr1	-	2573	8	NIC	ENSMUSG00000026196.8	novel	5659	11	NA	NA	180	-2625	combination_of_known_splicesites	FALSE	canonical	2	2	junction_7	16.7575751984173	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTGTTAAATCCACGTG	NA	False	NA	NA	False	NA	NA	NA	71142125	71069281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_71070012_71070517_71070616_71085836_71085930_71086798_71086932_71092771_71092881_71104637_71104811_71113701_71114640_71141826
ENSMUSG00000026196.8_3	chr1	-	2604	11	FSM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	193	2862	193	-2862	multi-exon	FALSE	canonical	3	27	junction_8	5.88642506110457	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCATTTTGATGCCTAAA	NA	False	NA	-34	True	AATAAA	-21	NA	71142112	71069518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_71070012_71070517_71070616_71085836_71085930_71086798_71086932_71092771_71092881_71104637_71104811_71106266_71106348_71113701_71114640_71127267_71127411_71128629_71128687_71141826
ENSMUSG00000026196.8_6	chr1	-	2398	9	NIC	ENSMUSG00000026196.8	novel	5659	11	NA	NA	191	-2870	combination_of_known_splicesites	FALSE	canonical	2	2	junction_8	13.5917024319987	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTAGGAATTCATTTTGA	NA	False	NA	-42	True	AATAAA	-13	NA	71142114	71069526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_71070012_71070517_71070616_71085836_71085930_71086798_71086932_71092771_71092881_71104637_71104811_71106266_71106348_71113701_71114640_71141826
ENSMUSG00000026197.13_0	chr1	+	1177	10	FSM	ENSMUSG00000026197.13	ENSMUST00000160439.8	1206	10	22	7	2	-3	multi-exon	FALSE	canonical	3	87	junction_1	30.0361921605614	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTATGAGTGCTGTTT	2054	False	NA	9	True	AGTAAA	-15	NA	75145311	75148266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
ENSMUSG00000026197.13_1	chr1	+	1080	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	-3	-4	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	47.0130005660373	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATGTATGAGTGCTGTT	2049	False	NA	8	True	AGTAAA	-14	NA	75145306	75148265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
ENSMUSG00000026197.13_12	chr1	+	1223	9	FSM	ENSMUSG00000026197.13	ENSMUST00000027394.12	1316	9	89	4	-34	-4	multi-exon	FALSE	canonical	3	127	junction_8	17.9304210770411	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATGTATGAGTGCTGTT	2130	False	NA	8	True	AGTAAA	-14	NA	75145387	75148265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
ENSMUSG00000026197.13_14	chr1	+	1125	9	NIC	ENSMUSG00000026197.13	novel	1316	9	NA	NA	-36	-3	combination_of_known_junctions	FALSE	canonical	3	41	junction_8	44.3727112085795	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTATGAGTGCTGTTT	2128	False	NA	9	True	AGTAAA	-15	NA	75145385	75148266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
ENSMUSG00000026197.13_2	chr1	+	1174	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	43.344727846634	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTATGAGTGCTGTTT	2054	False	NA	9	True	AGTAAA	-15	NA	75145311	75148266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75145352_75145477_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
ENSMUSG00000026197.13_3	chr1	+	1092	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	3	-3	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	55.5417760689095	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTATGAGTGCTGTTT	2035	False	NA	9	True	AGTAAA	-15	NA	75145292	75148266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75145352_75145477_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
ENSMUSG00000026198.16_0	chr1	-	2868	19	FSM	ENSMUSG00000026198.16	ENSMUST00000027396.15	2966	19	94	4	-12	-2	multi-exon	TRUE	canonical	3	123	junction_18	16.1765910736914	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGACGGCTGTGGTTTGGT	NA	False	NA	-6	True	AATAAA	-11	NA	75156942	75148364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151_75152262_75152733_75152856_75153946_75154131_75154308_75154411_75154565_75154747_75155574_75155713_75156213
ENSMUSG00000026199.18_14	chr1	+	4836	9	NIC	ENSMUSG00000026199.18	novel	2770	13	NA	NA	2	-4	intron_retention	FALSE	canonical	3	90	junction_4	15.5999799679359	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGTGTGTGTACTTAC	78	False	NA	15	True	AATAAA	-11	NA	75168837	75176027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75170929_75171484_75171588_75171706_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
ENSMUSG00000026199.18_19	chr1	+	1159	4	ISM	ENSMUSG00000026199.18	ENSMUST00000127625.3	1167	5	6	3	6	-3	intron_retention	FALSE	canonical	3	96	junction_1	11.0855260988773	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAACACTTGGTTTCTT	82	False	NA	NA	False	NA	NA	NA	75168841	75172175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706
ENSMUSG00000026199.18_23	chr1	+	3037	12	NIC	ENSMUSG00000026199.18	novel	2770	13	NA	NA	9	-4	intron_retention	FALSE	canonical	3	76	junction_4	18.0906806746658	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGTGTGTGTACTTAC	85	False	NA	15	True	AATAAA	-11	NA	75168844	75176027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
ENSMUSG00000026199.18_3	chr1	+	2700	13	FSM	ENSMUSG00000026199.18	ENSMUST00000152233.9	2739	13	32	7	0	-7	multi-exon	TRUE	canonical	2	42	junction_4	25.5582124222768	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACTGTGTGTGTACT	76	False	NA	12	True	AATAAA	-8	NA	75168835	75176024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172243_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
ENSMUSG00000026199.18_7	chr1	+	3318	10	NIC	ENSMUSG00000026199.18	novel	2770	13	NA	NA	17	-7	intron_retention	FALSE	canonical	3	90	junction_5	16.0100277218474	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACTGTGTGTGTACT	93	False	NA	12	True	AATAAA	-8	NA	75168852	75176024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
ENSMUSG00000026200.14_4	chr1	-	3913	16	ISM	ENSMUSG00000026200.14	ENSMUST00000113623.8	2339	17	1314	-1801	30	690	3prime_fragment	FALSE	canonical	2	6	junction_6	4.27083130081252	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGATCCTGACATGAAGT	6548	False	NA	NA	False	TATAAA	-10	NA	75186108	75174189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_75176402_75176554_75176771_75176973_75177106_75177587_75177702_75177841_75177932_75178042_75178118_75178386_75178506_75178693_75178735_75178830_75178953_75179051_75179111_75179218_75179394_75179490_75179586_75184962_75185024_75185330_75185482_75185699_75185867_75186024
ENSMUSG00000026200.14_5	chr1	-	2544	3	ISM	ENSMUSG00000026200.14	ENSMUST00000189663.7	1279	11	2450	-1950	732	695	3prime_fragment	FALSE	canonical	3	10	junction_2	3	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGACATGAAGTGTTTT	3294	False	NA	NA	False	TATAAA	-15	NA	75177084	75174184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_75176402_75176554_75176771_75176973
ENSMUSG00000026201.13_0	chr1	+	1491	8	FSM	ENSMUSG00000026201.13	ENSMUST00000027401.11	2876	8	21	1364	11	0	multi-exon	FALSE	canonical	3	167	junction_4	30.7265756142723	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187502	75190886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
ENSMUSG00000026201.13_1	chr1	+	2110	5	NIC	ENSMUSG00000026201.13	novel	1500	8	NA	NA	-5	0	intron_retention	FALSE	canonical	3	176	junction_1	31.068472765812	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187508	75190886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75190342_75190457
ENSMUSG00000026201.13_16	chr1	+	1596	8	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	10	1	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	72.9262977118624	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATATTTTAGGTCAATGT	NA	False	NA	7	True	AATAAA	-15	NA	75187501	75190884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75187803_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
ENSMUSG00000026201.13_17	chr1	+	1957	6	NIC	ENSMUSG00000026201.13	novel	1500	8	NA	NA	-4	0	intron_retention	FALSE	canonical	3	167	junction_4	34.5913283931103	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187509	75190886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75190342_75190457
ENSMUSG00000026201.13_18	chr1	+	1389	7	NIC	ENSMUSG00000026201.13	novel	1500	8	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_5	75.900519687871	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187508	75190886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75190219_75190342_75190457
ENSMUSG00000026201.13_19	chr1	+	1459	8	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	11	-1	combination_of_known_junctions	FALSE	canonical	3	65	junction_1	57.8389742195996	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTATATTTTAGGTCAAT	NA	False	NA	5	True	AATAAA	-13	NA	75187502	75190882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75187669_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
ENSMUSG00000026201.13_3	chr1	+	1758	6	NIC	ENSMUSG00000026201.13	novel	1500	8	NA	NA	-10	-7	intron_retention	FALSE	canonical	3	176	junction_1	28.1666469427939	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGACCGTGTATATTTTAG	NA	False	NA	-1	True	AATAAA	-7	NA	75187503	75190876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189873_75190219_75190342_75190457
ENSMUSG00000026201.13_4	chr1	+	648	3	FSM	ENSMUSG00000026201.13	ENSMUST00000123825.8	636	3	-15	3	11	-3	multi-exon	FALSE	canonical	3	65	junction_1	98.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACATGCCCTGGTTTGGC	NA	False	NA	NA	False	CATAAA	-10	NA	75187502	75188875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75187669_75187883_75188059_75188568
ENSMUSG00000026201.13_6	chr1	+	1621	7	NIC	ENSMUSG00000026201.13	novel	1500	8	NA	NA	5	1	intron_retention	FALSE	canonical	3	167	junction_4	31.580584752872	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATATTTTAGGTCAATGT	NA	False	NA	7	True	AATAAA	-15	NA	75187496	75190884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189873_75190219_75190342_75190457
ENSMUSG00000026202.14_0	chr1	-	1473	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	43	1324	-8	60	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTCCCCTTTGTAAC	NA	False	NA	-17	True	AATAAA	-17	NA	75195895	75192195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
ENSMUSG00000026202.14_1	chr1	-	1416	3	ISM	ENSMUSG00000026202.14	ENSMUST00000079464.13	2083	4	1189	579	-1	61	3prime_fragment	FALSE	canonical	3	248	junction_2	2.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTCCCCTTTGTAACT	NA	False	NA	-16	True	AATAAA	-18	NA	75194079	75192194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_75193238_75193470_75193620_75193855
ENSMUSG00000026202.14_2	chr1	-	2279	3	FSM	ENSMUSG00000026202.14	ENSMUST00000187103.2	815	3	-8	-1456	-8	-7	multi-exon	FALSE	canonical	3	248	junction_1	30.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTCTGTTTGTGCTTTC	NA	False	NA	-9	True	ATTAAA	-13	NA	75195895	75191622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75193620_75193855_75194079_75195836
ENSMUSG00000026202.14_3	chr1	-	457	1	ISM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	3288	1322	1408	62	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTCCCCTTTGTAACTG	6	True	NA	-15	True	AATAAA	-19	NA	75192650	75192193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_75192200_75192600
ENSMUSG00000026202.14_4	chr1	-	1767	2	ISM	ENSMUSG00000026202.14	ENSMUST00000079464.13	2083	4	1648	5	438	-5	3prime_fragment	FALSE	canonical	3	253	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCTGTTTGTGCTTTCTT	NA	False	NA	-7	True	ATTAAA	-15	NA	75193620	75191620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_75193238_75193470
ENSMUSG00000026203.17_0	chr1	+	1892	10	FSM	ENSMUSG00000026203.17	ENSMUST00000188290.7	1855	10	-38	1	-16	1	multi-exon	FALSE	canonical	3	30	junction_9	6.24400947476761	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTCGGTGGCCTGTGTTC	2221	False	NA	3	True	AATAAA	-13	NA	75213092	75222333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
ENSMUSG00000026203.17_1	chr1	+	3025	9	FSM	ENSMUSG00000026203.17	ENSMUST00000188931.7	3066	9	41	0	-18	0	multi-exon	FALSE	canonical	3	35	junction_1	4.89738450603993	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTCGGTGGCCTGTGTT	2219	False	NA	2	True	AATAAA	-12	NA	75213090	75222332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101
ENSMUSG00000026203.17_16	chr1	+	1858	10	FSM	ENSMUSG00000026203.17	ENSMUST00000188346.7	1823	10	-39	4	24	0	multi-exon	FALSE	canonical	1	4	junction_1	13.4669233565562	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTCGGTGGCCTGTGTT	2202	False	NA	2	True	AATAAA	-12	NA	75213073	75222332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75213182_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
ENSMUSG00000026203.17_19	chr1	+	2042	11	NIC	ENSMUSG00000026203.17	novel	1855	10	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	15.1396829557293	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2228	False	NA	4	True	AATAAA	-14	NA	75213099	75222334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221078_75221235_75221437
ENSMUSG00000026203.17_21	chr1	+	2946	9	NIC	ENSMUSG00000026203.17	novel	3066	9	NA	NA	-29	0	intron_retention	FALSE	canonical	3	15	junction_8	10.4694496034892	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTCGGTGGCCTGTGTT	2357	False	NA	2	True	AATAAA	-12	NA	75213228	75222332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75221235_75221437
ENSMUSG00000026203.17_6	chr1	+	2713	10	NIC	ENSMUSG00000026203.17	novel	1855	10	NA	NA	2	0	intron_retention	FALSE	canonical	3	15	junction_9	10.0418875801733	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2330	False	NA	4	True	AATAAA	-14	NA	75213201	75222334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75221235_75221437
ENSMUSG00000026203.17_7	chr1	+	1912	11	NNC	ENSMUSG00000026203.17	novel	1855	10	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	13.7873130087048	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2230	False	NA	4	True	AATAAA	-14	NA	75213101	75222334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221206_75221235_75221437
ENSMUSG00000026203.17_8	chr1	+	2040	9	FSM	ENSMUSG00000026203.17	ENSMUST00000082158.13	1253	9	97	-884	6	0	multi-exon	FALSE	canonical	3	30	junction_8	6.09815545882523	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTCGGTGGCCTGTGTT	2334	False	NA	2	True	AATAAA	-12	NA	75213205	75222332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
ENSMUSG00000026204.16_0	chr1	-	1278	9	ISM	ENSMUSG00000026204.16	ENSMUST00000027404.12	3554	23	11134	16	4918	-16	3prime_fragment	TRUE	canonical	1	2	junction_1	1.71391365010026	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACGGATGCCTTTGAGGC	7149	False	NA	-7	True	AATAAA	-26	NA	75229723	75223686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_75224265_75224480_75224555_75224745_75224811_75225369_75225424_75228394_75228562_75228899_75229020_75229111_75229190_75229414_75229489_75229655
ENSMUSG00000026204.16_3	chr1	-	3506	23	FSM	ENSMUSG00000026204.16	ENSMUST00000027404.12	3554	23	24	24	19	-24	multi-exon	FALSE	canonical	0	0	junction_15	2.05553073719909	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCTGCAACACGGATGCC	NA	False	NA	-15	True	AATAAA	-18	NA	75240833	75223694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75224265_75224480_75224555_75224745_75224811_75225369_75225424_75228394_75228562_75228899_75229020_75229111_75229190_75229414_75229489_75229655_75229804_75229903_75230105_75230566_75230786_75231228_75231294_75231422_75231503_75231768_75231856_75232270_75232546_75233486_75233525_75233936_75234069_75234588_75234941_75235022_75235282_75237214_75237312_75238670_75238785_75238966_75239018_75240647
ENSMUSG00000026208.10_0	chr1	+	2033	9	FSM	ENSMUSG00000026208.10	ENSMUST00000027409.10	3028	9	137	858	137	-858	multi-exon	FALSE	canonical	2	4	junction_1	8.9154010005159	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCCCTGTCATCTTGACT	NA	False	NA	9	True	AATAAA	-20	NA	75337109	75344365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75337637_75338801_75338863_75338956_75339053_75339208_75339371_75339537_75339664_75340114_75340336_75341971_75342016_75343403_75343487_75343652
ENSMUSG00000026208.10_1	chr1	+	1634	8	ISM	ENSMUSG00000026208.10	ENSMUST00000027409.10	3028	9	1693	866	-8	-866	3prime_fragment	FALSE	canonical	3	24	junction_7	3.01695886884898	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTGCATGGCCCTGTCA	NA	False	NA	1	True	AATAAA	-12	NA	75338665	75344357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_75338863_75338956_75339053_75339208_75339371_75339537_75339664_75340114_75340336_75341971_75342016_75343403_75343487_75343652
ENSMUSG00000026209.16_2	chr1	-	1655	15	FSM	ENSMUSG00000026209.16	ENSMUST00000066668.14	2488	15	163	670	-27	-1	multi-exon	FALSE	canonical	3	522	junction_14	119.683362013511	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTCTGTGCTTTTTCTG	NA	False	NA	-2	True	ATTAAA	-16	NA	75294118	75285209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
ENSMUSG00000026209.16_3	chr1	-	1601	15	FSM	ENSMUSG00000026209.16	ENSMUST00000113605.10	1571	15	-31	1	17	-1	multi-exon	FALSE	canonical	3	252	junction_14	185.094639334056	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTCTGTGCTTTTTCTG	NA	False	NA	-2	True	ATTAAA	-16	NA	75293620	75285209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
ENSMUSG00000026209.16_5	chr1	-	1678	14	FSM	ENSMUSG00000026209.16	ENSMUST00000187836.7	1862	14	183	1	-21	-1	multi-exon	FALSE	canonical	3	848	junction_13	52.2384156632446	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTCTGTGCTTTTTCTG	NA	False	NA	-2	True	ATTAAA	-16	NA	75293610	75285209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353
ENSMUSG00000026211.19_10	chr1	-	3774	8	ISM	ENSMUSG00000026211.19	ENSMUST00000155084.8	4131	12	-739	5809	-19	-6	5prime_fragment	FALSE	canonical	3	33	junction_3	4.13546137889432	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAACCTCATGGTAAATA	NA	False	NA	NA	False	AATAAA	-19	NA	75483024	75472986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_75473925_75474718_75474992_75476545_75476819_75478602_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
ENSMUSG00000026211.19_11	chr1	-	3401	9	FSM	ENSMUSG00000026211.19	ENSMUST00000113565.3	3379	9	-29	7	-29	-6	multi-exon	FALSE	canonical	3	16	junction_1	8.70254991367473	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAACCTCATGGTAAATA	NA	False	NA	NA	False	AATAAA	-19	NA	75483034	75472986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75473269_75473651_75473925_75474718_75474992_75476545_75476819_75478602_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
ENSMUSG00000026211.19_17	chr1	-	4848	12	FSM	ENSMUSG00000026211.19	ENSMUST00000155084.8	4131	12	-724	7	-4	-7	multi-exon	FALSE	canonical	1	1	junction_1	17.2564516621159	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAACTCTCTGTATTTA	NA	False	NA	NA	False	CATAAA	-12	NA	75483009	75467184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75468102_75469149_75469438_75469513_75469790_75470428_75470702_75473651_75473925_75474718_75474992_75476545_75476819_75478602_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
ENSMUSG00000026213.16_0	chr1	+	4136	24	FSM	ENSMUSG00000026213.16	ENSMUST00000113553.2	4153	24	19	-2	19	-1	multi-exon	FALSE	canonical	3	37	junction_10	9.28136128468159	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCTGACTCTGGAAGTCA	2782	False	NA	17	True	AATAAA	-16	NA	75498214	75513578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75498494_75501326_75501533_75501731_75501807_75502062_75502159_75502495_75502604_75502730_75502803_75503701_75503829_75504006_75504111_75504219_75504316_75504445_75504488_75504612_75504763_75504952_75505038_75505554_75505906_75506054_75506261_75506577_75506695_75506816_75506995_75508946_75509160_75509270_75509375_75510203_75510302_75510396_75510576_75510815_75510898_75511047_75511119_75511821_75512070_75512729
ENSMUSG00000026213.16_1	chr1	+	4044	25	FSM	ENSMUSG00000026213.16	ENSMUST00000027414.16	4458	25	11	403	11	0	multi-exon	FALSE	canonical	3	17	junction_1	11.130538571376	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGCTGACTCTGGAAGT	2751	False	NA	15	True	AATAAA	-14	NA	75498183	75513576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75498287_75498407_75498494_75501326_75501533_75501731_75501807_75502062_75502159_75502495_75502604_75502730_75502803_75503701_75503829_75504006_75504111_75504219_75504316_75504445_75504488_75504612_75504763_75504952_75505038_75505554_75505906_75506054_75506261_75506577_75506695_75506816_75506995_75508946_75509160_75509270_75509375_75510203_75510302_75510396_75510576_75510815_75510898_75511047_75511119_75511821_75512070_75512729
ENSMUSG00000026213.16_20	chr1	+	2635	12	FSM	ENSMUSG00000026213.16	ENSMUST00000156838.8	2968	12	330	3	330	0	multi-exon	FALSE	canonical	3	40	junction_1	11.0378761880989	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGCTGACTCTGGAAGT	5	True	NA	15	True	AATAAA	-14	NA	75505613	75513576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75505906_75506054_75506261_75506577_75506695_75506816_75506995_75508946_75509160_75509270_75509375_75510203_75510302_75510396_75510576_75510815_75510898_75511047_75511119_75511821_75512070_75512729
ENSMUSG00000026219.15_0	chr1	-	5425	38	ISM	ENSMUSG00000026219.15	ENSMUST00000027421.13	9632	41	53172	3117	-1834	-42	3prime_fragment	TRUE	canonical	3	676	junction_25	186.064775826878	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTGGGCTGTGTGTATC	2189	False	NA	-25	True	AATAAA	-17	NA	84763853	84702026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811
ENSMUSG00000026219.15_3	chr1	-	6558	41	FSM	ENSMUSG00000026219.15	ENSMUST00000027421.13	9632	41	-43	3117	-36	-42	multi-exon	FALSE	canonical	3	439	junction_40	206.047323144466	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTGGGCTGTGTGTATC	7851	False	NA	-25	True	AATAAA	-17	NA	84817068	84702026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84816949
ENSMUSG00000026220.7_0	chr1	-	5687	5	NIC	ENSMUSG00000026220.7	novel	3207	5	NA	NA	-61	2272	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	3.96074487943871	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTGGTCAGTGATGTTT	NA	False	NA	-7	True	AATAAA	-14	NA	84912916	84881346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_84885151_84889916_84890895_84900574_84900719_84907007_84907286_84912433
ENSMUSG00000026220.7_1	chr1	-	3693	5	FSM	ENSMUSG00000026220.7	ENSMUST00000027422.7	3207	5	34	-520	34	520	multi-exon	FALSE	canonical	2	5	junction_3	2.59807621135332	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATAGTTCTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	84912821	84883098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_84885151_84889916_84890895_84900574_84900719_84907007_84907286_84912580
ENSMUSG00000026223.16_0	chr1	+	1913	6	FSM	ENSMUSG00000026223.16	ENSMUST00000027425.16	2230	6	300	17	-38	-17	multi-exon	FALSE	canonical	3	192	junction_3	14.9853261559434	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATTAAAAAAAAACAACA	NA	False	NA	-25	True	NA	NA	NA	85822301	85836379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_85822511_85830730_85830872_85832934_85833124_85834142_85834254_85834728_85834880_85835267
ENSMUSG00000026227.12_0	chr1	+	3240	3	FSM	ENSMUSG00000026227.12	ENSMUST00000027429.11	1225	3	79	-2094	79	-9	multi-exon	FALSE	canonical	1	2	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAAGCAGAATGGGTCTC	NA	False	NA	NA	False	AATAAA	-25	NA	85973663	85983169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_85974295_85976312_85976424_85980671
ENSMUSG00000026229.18_1	chr1	+	3205	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	42	-135	20	135	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	3003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGACCAGACTTTAGTT	NA	False	NA	16	True	AATAAA	-16	NA	85992382	86067008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
ENSMUSG00000026229.18_9	chr1	+	2645	22	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	37	6408	15	-6	5prime_fragment	FALSE	canonical	3	1352	junction_6	88.9904323630029	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGCTAAAAAAAAAGAAAA	NA	False	NA	24	True	NA	NA	NA	85992377	86060465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435
ENSMUSG00000026234.13_11	chr1	-	1850	12	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	2211	5777	1780	0	3prime_fragment	FALSE	canonical	3	5903	junction_8	870.888621888894	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	-29	True	AGTAAA	-15	NA	86284911	86278217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678
ENSMUSG00000026234.13_13	chr1	-	2225	13	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	1182	5777	751	0	3prime_fragment	FALSE	canonical	3	5903	junction_8	890.005816928556	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	-29	True	AGTAAA	-15	NA	86285940	86278217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828
ENSMUSG00000026234.13_3	chr1	-	2390	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	35	5777	-1	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	8564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	-29	True	AGTAAA	-15	NA	86287087	86278217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
ENSMUSG00000026235.15_0	chr1	-	6312	18	FSM	ENSMUSG00000026235.15	ENSMUST00000188952.7	6315	18	0	3	0	-3	multi-exon	FALSE	canonical	3	112	junction_15	30.5422731607683	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTGAAATCTGGTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	77491716	77343828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
ENSMUSG00000026235.15_1	chr1	-	2844	2	ISM	ENSMUSG00000026235.15	ENSMUST00000188952.7	6315	18	141806	3	4334	-3	3prime_fragment	FALSE	canonical	3	243	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTGAAATCTGGTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	77349910	77343828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_77346309_77349546
ENSMUSG00000026235.15_12	chr1	-	4643	11	ISM	ENSMUSG00000026235.15	ENSMUST00000188952.7	6315	18	116492	3	-20980	-3	3prime_fragment	TRUE	canonical	3	151	junction_7	26.1143638635905	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTGAAATCTGGTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	77375224	77343828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130
ENSMUSG00000026235.15_13	chr1	-	5152	14	ISM	ENSMUSG00000026235.15	ENSMUST00000188952.7	6315	18	88319	7	-49153	-7	3prime_fragment	FALSE	canonical	3	129	junction_12	26.9601941945142	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAACCTGAAATCTGGT	NA	False	NA	-14	True	AATAAA	-12	NA	77403397	77343832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187
ENSMUSG00000026235.15_14	chr1	-	3656	4	ISM	ENSMUSG00000026235.15	ENSMUST00000188952.7	6315	18	137580	7	108	-7	3prime_fragment	FALSE	canonical	3	180	junction_2	28.003967972811	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAACCTGAAATCTGGT	NA	False	NA	-14	True	AATAAA	-12	NA	77354136	77343832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050
ENSMUSG00000026235.15_2	chr1	-	3820	5	ISM	ENSMUSG00000026235.15	ENSMUST00000188952.7	6315	18	134164	3	-3308	-3	3prime_fragment	FALSE	canonical	3	170	junction_4	28.2964220353033	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTGAAATCTGGTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	77357552	77343828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050_77354245_77357500
ENSMUSG00000026235.15_37	chr1	-	3316	17	FSM	ENSMUSG00000026235.15	ENSMUST00000188797.7	3612	17	5	291	0	183	multi-exon	FALSE	canonical	3	112	junction_14	22.2548274257519	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTCGATGCTGTATTTCC	NA	False	NA	-7	True	AATAAA	-13	NA	77491720	77350066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
ENSMUSG00000026235.15_5	chr1	-	1762	1	ISM	ENSMUSG00000026235.15	ENSMUST00000027451.13	6328	18	146140	2	8659	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAATCTGGTTGTCTTTGT	NA	False	NA	-5	True	AATAAA	-21	NA	77345585	77343823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_77343800_77345600
ENSMUSG00000026235.15_6	chr1	-	5836	16	ISM	ENSMUSG00000026235.15	ENSMUST00000188952.7	6315	18	8137	3	8137	-3	3prime_fragment	FALSE	canonical	3	112	junction_15	30.6430343725218	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTGAAATCTGGTTGTC	5120	False	NA	-10	True	AATAAA	-16	NA	77483579	77343828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184
ENSMUSG00000026238.15_2	chr1	+	1203	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	17	-4	-17	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	12219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGGTGTCTCAAAGCC	NA	False	NA	40	True	AATAAA	-29	NA	86454443	86458417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
ENSMUSG00000026238.15_6	chr1	+	695	1	ISM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	3275	17	3194	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGGTGTCTCAAAGCC	NA	False	NA	40	True	AATAAA	-29	NA	86457722	86458417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_86457700_86458400
ENSMUSG00000026239.15_0	chr1	-	1113	5	FSM	ENSMUSG00000026239.15	ENSMUST00000027444.15	1159	5	21	25	-9	3	multi-exon	FALSE	canonical	3	312	junction_1	25.5391855782443	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGCCGATGCTTCCATC	NA	False	NA	-8	True	ATTAAA	-18	NA	86510248	86470740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475250_86475340_86510021
ENSMUSG00000026239.15_2	chr1	-	1001	4	NIC	ENSMUSG00000026239.15	novel	1159	5	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	164.641698511917	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGCATGCCGATGCTTCC	NA	False	NA	-11	True	ATTAAA	-15	NA	86510245	86470743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_86471306_86474378_86474505_86475250_86475340_86510021
ENSMUSG00000026240.13_5	chr1	+	1950	7	FSM	ENSMUSG00000026240.13	ENSMUST00000027446.11	2231	7	43	238	1	-64	multi-exon	FALSE	canonical	3	303	junction_3	30.6743649757687	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTGTGTCAATATTTG	NA	False	NA	29	True	AATACA	-19	NA	86514864	86533984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
ENSMUSG00000026240.13_8	chr1	+	1861	6	FSM	ENSMUSG00000026240.13	ENSMUST00000122884.2	2578	6	1	716	1	-64	multi-exon	FALSE	canonical	3	42	junction_3	130.042147013959	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTGTGTCAATATTTG	NA	False	NA	29	True	AATACA	-19	NA	86514864	86533984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_86514958_86516885_86517064_86520012_86520089_86526724_86526928_86528804_86528911_86532779
ENSMUSG00000026245.17_3	chr1	-	1890	17	FSM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	42	19	4	-2	multi-exon	FALSE	canonical	3	979	junction_9	154.241693455434	1404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCTTGCGTAGCTGCAT	NA	False	NA	-4	True	AATAAA	-17	NA	78465492	78401723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
ENSMUSG00000026245.17_4	chr1	-	1793	17	FSM	ENSMUSG00000026245.17	ENSMUST00000189529.7	1801	17	7	1	4	-1	multi-exon	FALSE	canonical	3	42	junction_15	338.950378927359	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTTGCGTAGCTGCATT	NA	False	NA	-3	True	AATAAA	-18	NA	78465492	78401722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456651_78458944_78459001_78465421
ENSMUSG00000026246.13_0	chr1	-	2108	11	FSM	ENSMUSG00000026246.13	ENSMUST00000027455.13	2092	11	-17	1	0	0	multi-exon	FALSE	canonical	0	0	junction_5	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGTCGTATCAGTTTTG	NA	False	NA	NA	False	AATAAA	-15	NA	87017650	87014416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_87015063_87015150_87015268_87015379_87015572_87015654_87015790_87015895_87015969_87016077_87016213_87016427_87016601_87016671_87016847_87016994_87017111_87017216_87017334_87017421
ENSMUSG00000026247.14_0	chr1	-	2873	18	FSM	ENSMUSG00000026247.14	ENSMUST00000160810.2	2898	18	27	-2	27	-2	multi-exon	FALSE	canonical	2	4	junction_8	3.05089470115057	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAGCCTTGGCCTCCAGA	6067	False	NA	NA	False	AATAAA	-14	NA	87083860	87075381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_87075809_87075947_87076025_87076346_87076443_87076855_87076922_87077217_87077343_87077505_87077574_87078198_87078251_87078327_87078387_87078621_87078726_87078856_87078932_87079170_87079270_87079704_87079928_87080540_87080666_87080841_87080935_87081022_87081134_87081239_87081309_87081925_87082811_87083741
ENSMUSG00000026247.14_2	chr1	-	3161	17	NIC	ENSMUSG00000026247.14	novel	2898	18	NA	NA	35	-2	intron_retention	FALSE	canonical	2	4	junction_7	3.07649861855974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAGCCTTGGCCTCCAGA	6075	False	NA	NA	False	AATAAA	-14	NA	87083852	87075381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_87075809_87075947_87076025_87076346_87076443_87076855_87077343_87077505_87077574_87078198_87078251_87078327_87078387_87078621_87078726_87078856_87078932_87079170_87079270_87079704_87079928_87080540_87080666_87080841_87080935_87081022_87081134_87081239_87081309_87081925_87082811_87083741
ENSMUSG00000026248.10_0	chr1	+	1316	4	FSM	ENSMUSG00000026248.10	ENSMUST00000027464.9	1424	4	107	1	9	-1	multi-exon	FALSE	canonical	3	315	junction_2	2.44948974278318	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTTTCCTTTCTTTA	NA	False	NA	12	True	AATAAA	-14	NA	79753841	79759161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_79754029_79755574_79756044_79757204_79757384_79758680
ENSMUSG00000026248.10_8	chr1	+	252	1	ISM	ENSMUSG00000026248.10	ENSMUST00000027464.9	1424	4	5175	1	5077	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTTTCCTTTCTTTA	NA	False	NA	12	True	AATAAA	-14	NA	79758909	79759161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_79758900_79759200
ENSMUSG00000026249.11_0	chr1	-	1787	8	NIC	ENSMUSG00000026249.11	novel	2210	9	NA	NA	-1	-82	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	19.9989795658046	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTGGTCTGTACTCTTT	NA	False	NA	37	True	NA	NA	NA	79836353	79771995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444_79794673_79836227
ENSMUSG00000026249.11_1	chr1	-	2016	9	FSM	ENSMUSG00000026249.11	ENSMUST00000027467.11	2210	9	62	132	1	-132	multi-exon	FALSE	canonical	3	45	junction_4	6.12244844812923	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTAACGTCTCGCTGGA	NA	False	NA	-13	True	AATAAA	-6	NA	79836351	79772045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444_79794673_79798993_79799275_79836227
ENSMUSG00000026251.14_0	chr1	+	2931	12	FSM	ENSMUSG00000026251.14	ENSMUST00000073252.9	2925	12	-7	1	-7	0	multi-exon	FALSE	canonical	0	0	junction_4	1.67628081041689	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGCTTGTGGTAATTTG	NA	False	NA	NA	False	AATAAA	-14	NA	87118351	87127791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87118465_87118696_87118852_87119241_87119287_87119935_87120046_87120207_87120364_87120567_87120678_87122521_87122723_87123206_87123319_87123404_87123520_87125004_87125210_87125296_87125416_87126301
ENSMUSG00000026254.18_0	chr1	+	958	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	50	799	-15	-7	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGCTTGTCTCATGCT	NA	False	NA	8	True	AATAAA	-8	NA	87141685	87155779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ENSMUSG00000026254.18_17	chr1	+	2976	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113230.8	1569	6	50	-1457	10	-7	multi-exon	FALSE	canonical	3	1076	junction_1	501.781067797501	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGCTTGTCTCATGCT	NA	False	NA	8	True	AATAAA	-8	NA	87141710	87155779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
ENSMUSG00000026254.18_2	chr1	+	3099	7	FSM	ENSMUSG00000026254.18	ENSMUST00000076362.12	3394	7	52	243	-13	-243	multi-exon	FALSE	canonical	3	212	junction_6	847.519796556727	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGAGAGCAGGCTGTGG	NA	False	NA	9	True	AATAAA	-12	NA	87141687	87167967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87165567
ENSMUSG00000026254.18_3	chr1	+	1114	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113231.4	1119	7	-2	7	-2	-7	multi-exon	FALSE	canonical	3	1076	junction_1	458.210801802935	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGCTTGTCTCATGCT	NA	False	NA	8	True	AATAAA	-8	NA	87142005	87155779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ENSMUSG00000026254.18_4	chr1	+	3554	7	NIC	ENSMUSG00000026254.18	novel	3394	7	NA	NA	9	-242	intron_retention	FALSE	canonical	3	212	junction_6	831.352646126914	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGAGAGCAGGCTGTGGA	NA	False	NA	10	True	AATAAA	-13	NA	87141709	87167968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87165567
ENSMUSG00000026254.18_47	chr1	+	2184	1	ISM	ENSMUSG00000026254.18	ENSMUST00000076362.12	3394	7	24148	243	23776	-243	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGAGAGCAGGCTGTGG	NA	False	NA	9	True	AATAAA	-12	NA	87165783	87167967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_87165800_87168000
ENSMUSG00000026255.16_0	chr1	+	1781	5	FSM	ENSMUSG00000026255.16	ENSMUST00000118687.8	1726	5	-53	-2	-53	-1	multi-exon	FALSE	canonical	2	6	junction_4	2.58602010819715	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCAGTGTGCCTTTTTGG	1355	False	NA	NA	False	AATAAA	-24	NA	87192031	87238560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87192477_87217189_87217338_87225350_87225486_87237382_87237569_87237693
ENSMUSG00000026255.16_1	chr1	+	1874	4	FSM	ENSMUSG00000026255.16	ENSMUST00000027472.7	1854	4	-23	3	-23	0	multi-exon	FALSE	canonical	3	11	junction_2	0.942809041582063	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATACCAGTGTGCCTTTTT	1385	False	NA	NA	False	AATAAA	-22	NA	87192061	87238558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87192477_87217189_87217338_87225350_87225486_87237382
ENSMUSG00000026255.16_2	chr1	+	1552	2	FSM	ENSMUSG00000026255.16	ENSMUST00000150831.2	353	2	-103	-1096	-103	-1	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCAGTGTGCCTTTTTGG	NA	False	NA	NA	False	AATAAA	-24	NA	87236844	87238560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87237219_87237382
ENSMUSG00000026259.15_0	chr1	-	2723	13	FSM	ENSMUSG00000026259.15	ENSMUST00000027477.15	2746	13	19	4	19	-4	multi-exon	FALSE	canonical	1	2	junction_2	3.91578004149024	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAAGAGGTAGAGACCT	NA	False	NA	NA	False	NA	NA	NA	87438065	87404559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_87405467_87406824_87406930_87407558_87407639_87408308_87408465_87408837_87409002_87410344_87410435_87412320_87412396_87413877_87414008_87415520_87415674_87417305_87417467_87430987_87431296_87436966_87437110_87437814
ENSMUSG00000026259.15_1	chr1	-	2417	12	ISM	ENSMUSG00000026259.15	ENSMUST00000027477.15	2746	13	79	1608	79	243	5prime_fragment	FALSE	canonical	1	2	junction_1	3.89107901073322	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAAAGGGTCCCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	87438005	87406163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_87406930_87407558_87407639_87408308_87408465_87408837_87409002_87410344_87410435_87412320_87412396_87413877_87414008_87415520_87415674_87417305_87417467_87430987_87431296_87436966_87437110_87437814
ENSMUSG00000026259.15_2	chr1	-	2137	11	ISM	ENSMUSG00000026259.15	ENSMUST00000027477.15	2746	13	6983	2	6983	-2	3prime_fragment	FALSE	canonical	1	2	junction_2	4.22018956920184	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAGGTAGAGACCTAT	NA	False	NA	NA	False	NA	NA	NA	87431101	87404557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_87405467_87406824_87406930_87407558_87407639_87408308_87408465_87408837_87409002_87410344_87410435_87412320_87412396_87413877_87414008_87415520_87415674_87417305_87417467_87430987
ENSMUSG00000026260.13_0	chr1	-	1449	10	FSM	ENSMUSG00000026260.13	ENSMUST00000027478.7	2020	10	94	477	1	-208	multi-exon	FALSE	canonical	3	1166	junction_5	87.5025220095095	979	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTGTGTCTGCGTGGCA	NA	False	NA	-21	True	AATAAA	-19	NA	92401488	92367208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
ENSMUSG00000026269.15_0	chr1	+	3020	11	FSM	ENSMUSG00000026269.15	ENSMUST00000027487.15	3337	11	48	269	6	0	multi-exon	FALSE	canonical	3	45	junction_1	7.72334124585985	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGACCTCCCTTCCTG	6705	False	NA	19	True	ATTAAA	-13	NA	92838552	92848294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_92839206_92842780_92842922_92843535_92843688_92844076_92844194_92844432_92844669_92844868_92844983_92845355_92845469_92845739_92845849_92846594_92846826_92846905_92847049_92847283
ENSMUSG00000026269.15_21	chr1	+	1785	3	ISM	ENSMUSG00000026269.15	ENSMUST00000179127.8	1844	7	1682	0	1057	0	3prime_fragment	FALSE	canonical	3	57	junction_2	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGACCTCCCTTCCTG	NA	False	NA	19	True	ATTAAA	-13	NA	92846194	92848294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_92846826_92846905_92847049_92847283
ENSMUSG00000026269.15_22	chr1	+	542	1	ISM	ENSMUSG00000026269.15	ENSMUST00000027487.15	3337	11	9248	269	417	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGACCTCCCTTCCTG	NA	False	NA	19	True	ATTAAA	-13	NA	92847752	92848294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_92847800_92848300
ENSMUSG00000026270.12_1	chr1	+	2537	12	FSM	ENSMUSG00000026270.12	ENSMUST00000027488.11	2902	12	364	1	-26	-1	multi-exon	FALSE	canonical	3	87	junction_4	15.6743724089108	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGATTAGTCTTGTTCCAA	2624	False	NA	NA	False	AATAAA	-13	NA	92862461	92875662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92872738_92873001_92874495_92874696_92874936_92874983_92875230
ENSMUSG00000026270.12_4	chr1	+	2448	3	ISM	ENSMUSG00000026270.12	ENSMUST00000117814.8	1268	4	-29	-388	-29	388	intron_retention	FALSE	canonical	3	122	junction_1	8.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	2621	False	NA	NA	False	NA	NA	NA	92862458	92869082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_92862737_92865666_92865799_92867044
ENSMUSG00000026270.12_5	chr1	+	1291	4	FSM	ENSMUSG00000026270.12	ENSMUST00000117814.8	1268	4	-23	0	-23	0	multi-exon	FALSE	canonical	3	122	junction_1	7.1336448530109	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCGGACCTGCTGTGGT	2627	False	NA	18	True	CATAAA	-18	NA	92862464	92868694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004
ENSMUSG00000026270.12_9	chr1	+	2181	11	ISM	ENSMUSG00000026270.12	ENSMUST00000027488.11	2902	12	3650	1	-2433	-1	3prime_fragment	FALSE	canonical	3	87	junction_3	15.8962259671911	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGATTAGTCTTGTTCCAA	553	False	NA	NA	False	AATAAA	-13	NA	92865747	92875662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92872738_92873001_92874495_92874696_92874936_92874983_92875230
ENSMUSG00000026273.14_0	chr1	-	1291	4	FSM	ENSMUSG00000026273.14	ENSMUST00000027492.14	1366	4	50	25	-1	-25	multi-exon	FALSE	canonical	3	72	junction_3	7.36357401145817	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCAGGGGGTGCAACC	NA	False	NA	-24	True	AATAAA	-14	NA	93233587	93228951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93229518_93230439_93230625_93232329_93232829_93233546
ENSMUSG00000026273.14_1	chr1	-	2211	3	FSM	ENSMUSG00000026273.14	ENSMUST00000112942.2	1525	3	1	-687	0	-25	multi-exon	FALSE	canonical	3	72	junction_2	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCAGGGGGTGCAACC	NA	False	NA	-24	True	AATAAA	-14	NA	93233585	93228951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93230625_93232329_93232829_93233546
ENSMUSG00000026273.14_2	chr1	-	1098	4	FSM	ENSMUSG00000026273.14	ENSMUST00000112944.8	3097	4	-20	2019	-4	-25	multi-exon	FALSE	canonical	3	13	junction_1	30.4448499567478	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCAGGGGGTGCAACC	NA	False	NA	-24	True	AATAAA	-14	NA	93233605	93228951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93229307_93230439_93230625_93232329_93232829_93233546
ENSMUSG00000026273.14_4	chr1	-	3915	2	FSM	ENSMUSG00000026273.14	ENSMUST00000152307.2	1664	2	17	-2268	1	-25	multi-exon	FALSE	canonical	3	72	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCAGGGGGTGCAACC	NA	False	NA	-24	True	AATAAA	-14	NA	93233584	93228951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93232829_93233546
ENSMUSG00000026273.14_7	chr1	-	1119	3	ISM	ENSMUSG00000026273.14	ENSMUST00000027492.14	1366	4	940	25	888	-25	3prime_fragment	FALSE	canonical	3	82	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCAGGGGGTGCAACC	NA	False	NA	-24	True	AATAAA	-14	NA	93232697	93228951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_93229518_93230439_93230625_93232329
ENSMUSG00000026273.14_8	chr1	-	967	3	ISM	ENSMUSG00000026273.14	ENSMUST00000112944.8	3097	4	827	2021	827	-27	3prime_fragment	FALSE	canonical	3	13	junction_1	34.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAATCCAGGGGGTGCAA	NA	False	NA	-26	True	AATAAA	-12	NA	93232758	93228953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_93229307_93230439_93230625_93232329
ENSMUSG00000026274.12_0	chr1	-	4683	18	NIC	ENSMUSG00000026274.12	novel	5779	18	NA	NA	-14	-3	combination_of_known_junctions	FALSE	canonical	3	33	junction_17	48.1779429495616	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACACAAGGAGTGTTTA	NA	False	NA	-12	True	ATTAAA	-24	NA	93271218	93237562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_93237972_93238489_93238637_93240517_93240652_93242002_93242203_93244506_93244642_93244742_93244869_93247681_93247850_93248215_93248398_93248496_93249945_93251923_93252078_93253085_93253255_93254937_93255199_93258476_93258612_93259280_93259422_93262264_93262436_93263331_93263568_93265066_93265303_93270987
ENSMUSG00000026274.12_2	chr1	-	4690	18	FSM	ENSMUSG00000026274.12	ENSMUST00000027493.4	5779	18	26	1063	26	-3	multi-exon	FALSE	canonical	3	108	junction_17	39.6765468974106	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACACAAGGAGTGTTTA	NA	False	NA	-12	True	ATTAAA	-24	NA	93270485	93237562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93237972_93238489_93238637_93240517_93240652_93242002_93242203_93244506_93244642_93244742_93244869_93247681_93247850_93248215_93248398_93248496_93249945_93251923_93252078_93253085_93253255_93254937_93255199_93258476_93258612_93259280_93259422_93262264_93262436_93263331_93263568_93265066_93265303_93270247
ENSMUSG00000026274.12_4	chr1	-	2279	9	ISM	ENSMUSG00000026274.12	ENSMUST00000027493.4	5779	18	21243	1057	-4133	3	3prime_fragment	FALSE	canonical	3	113	junction_6	44.039577370815	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGGAGTGTTTAAGTTCT	NA	False	NA	-6	True	ATTAAA	-30	NA	93249268	93237556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_93237972_93238489_93238637_93240517_93240652_93242002_93242203_93244506_93244642_93244742_93244869_93247681_93247850_93248215_93248398_93248496
ENSMUSG00000026275.14_0	chr1	+	1308	10	FSM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	792	8215	-9	-8215	multi-exon	FALSE	canonical	3	496	junction_6	62.1028617061949	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGATGAAAGTTATTGTA	NA	False	NA	24	True	ATTAAA	-25	NA	93271367	93292996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611
ENSMUSG00000026275.14_22	chr1	+	2249	1	ISM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	22512	5875	21659	-5875	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAGAATCTGATAGACTT	NA	False	NA	14	True	AATAAA	-16	NA	93293087	93295336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_93293100_93295300
ENSMUSG00000026276.21_1	chr1	+	3190	13	FSM	ENSMUSG00000026276.21	ENSMUST00000027495.15	3779	13	56	533	-1	-533	multi-exon	FALSE	canonical	3	766	junction_1	78.56892762975	1519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATGAGTAGTCCTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	93406741	93437449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUSG00000026276.21_10	chr1	+	3326	14	NIC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	-1	-533	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	343.313233551171	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATGAGTAGTCCTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	93406741	93437449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_93406791_93407185_93407322_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUSG00000026276.21_2	chr1	+	3184	13	FSM	ENSMUSG00000116048.2	ENSMUST00000179353.8	3219	13	27	8	27	-8	multi-exon	FALSE	canonical	3	41	junction_1	266.051999929838	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAAATGAGTAGTCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	93406741	93437447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_93406791_93416849_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUSG00000026276.21_45	chr1	+	3260	13	FSM	ENSMUSG00000116048.2	ENSMUST00000168776.8	3267	13	2	5	2	-5	multi-exon	FALSE	canonical	3	67	junction_1	258.994798317564	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATGAGTAGTCCTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	93406784	93437450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_93406903_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUSG00000026276.21_60	chr1	+	3140	12	ISM	ENSMUSG00000116048.2	ENSMUST00000168776.8	3267	13	10062	8	10062	-8	3prime_fragment	FALSE	canonical	3	896	junction_9	51.6805188930786	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAAATGAGTAGTCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	93416844	93437447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUSG00000026276.21_80	chr1	+	1317	1	ISM	ENSMUSG00000026276.21	ENSMUST00000027495.15	3779	13	29449	531	2845	-531	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGAGTAGTCCTCTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	93436134	93437451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_93436100_93437500
ENSMUSG00000026277.15_0	chr1	-	2851	11	FSM	ENSMUSG00000026277.15	ENSMUST00000151068.8	2821	11	-36	6	-36	-6	multi-exon	TRUE	canonical	3	161	junction_5	14.8354305633507	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTCTGATGTACAGAG	NA	False	NA	-42	True	AATAAA	-13	NA	93563387	93549629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
ENSMUSG00000026277.15_12	chr1	-	1912	11	ISM	ENSMUSG00000026277.15	ENSMUST00000027498.14	4249	12	338	2162	95	-11	3prime_fragment	FALSE	canonical	3	133	junction_7	20.3036942451368	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGAAATGTTCTGATGTA	NA	False	NA	-47	True	AATAAA	-8	NA	93563106	93549634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93553931_93554746_93554856_93555375_93555433_93556755_93556987_93563019
ENSMUSG00000026277.15_2	chr1	-	2035	12	FSM	ENSMUSG00000026277.15	ENSMUST00000027498.14	4249	12	57	2157	-36	-6	multi-exon	FALSE	canonical	3	133	junction_7	20.1461601451751	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTCTGATGTACAGAG	NA	False	NA	-42	True	AATAAA	-13	NA	93563387	93549629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93553931_93554746_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
ENSMUSG00000026277.15_4	chr1	-	3025	10	NIC	ENSMUSG00000026277.15	novel	2821	11	NA	NA	-36	-6	intron_retention	FALSE	canonical	3	169	junction_6	13.6137185711081	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTCTGATGTACAGAG	NA	False	NA	-42	True	AATAAA	-13	NA	93563387	93549629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553689_93553772_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
ENSMUSG00000026278.15_0	chr1	+	1374	5	FSM	ENSMUSG00000026278.15	ENSMUST00000027499.13	1468	5	91	3	49	-3	multi-exon	FALSE	canonical	3	42	junction_1	2.9474565306379	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGTGAGACTCTACTCT	NA	False	NA	3	True	AATAAA	-13	NA	93613472	93623483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_93613577_93614139_93614392_93616878_93617008_93621781_93621946_93622758
ENSMUSG00000026278.15_1	chr1	+	2105	4	NIC	ENSMUSG00000026278.15	novel	1468	5	NA	NA	-80	-6	intron_retention	FALSE	canonical	3	47	junction_2	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAGTGTGAGACTCTAC	NA	False	NA	0	True	AATAAA	-10	NA	93613301	93623480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_93614392_93616878_93617008_93621781_93621946_93622758
ENSMUSG00000026279.15_0	chr1	-	1971	6	FSM	ENSMUSG00000026279.15	ENSMUST00000190116.7	5558	6	125	3462	-5	-6	multi-exon	FALSE	canonical	3	370	junction_4	24.3770383763081	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTATCACTGTGTAGAC	NA	False	NA	-8	True	AATAAA	-31	NA	93682377	93633118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93677568_93678708_93682178
ENSMUSG00000026279.15_1	chr1	-	1337	5	ISM	ENSMUSG00000026279.15	ENSMUST00000190116.7	5558	6	4230	3462	-596	-6	3prime_fragment	FALSE	canonical	3	370	junction_4	26.4988207284777	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTATCACTGTGTAGAC	NA	False	NA	-8	True	AATAAA	-31	NA	93678272	93633118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93677568
ENSMUSG00000026280.18_0	chr1	+	1661	13	NIC	ENSMUSG00000026280.18	novel	513	6	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	2	16	junction_1	90.4551761309926	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACATGAATTTCTG	NA	False	NA	14	True	ATTAAA	-20	NA	93679234	93715901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_93679304_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
ENSMUSG00000026280.18_1	chr1	+	1650	13	FSM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	92	2431	9	0	multi-exon	FALSE	canonical	3	280	junction_10	29.445217495093	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACATGAATTTCTG	NA	False	NA	14	True	ATTAAA	-20	NA	93682718	93715901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
ENSMUSG00000026280.18_19	chr1	+	1595	12	ISM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	13145	2431	-27	0	3prime_fragment	FALSE	canonical	3	280	junction_9	28.3639277374311	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACATGAATTTCTG	2044	False	NA	14	True	ATTAAA	-20	NA	93695771	93715901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
ENSMUSG00000026281.16_1	chr1	-	942	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	46	15	18	-15	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAATATATCTCACGAGC	2356	False	NA	-35	True	AATAAA	-9	NA	93729610	93720312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
ENSMUSG00000026281.16_13	chr1	-	2583	3	FSM	ENSMUSG00000026281.16	ENSMUST00000112893.2	1040	3	-1410	-133	-1050	-15	multi-exon	FALSE	canonical	3	1366	junction_2	100	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAATATATCTCACGAGC	3833	False	NA	-35	True	AATAAA	-9	NA	93728133	93720312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93720666_93722447_93722646_93726101
ENSMUSG00000026281.16_38	chr1	-	605	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	18	432	18	-432	multi-exon	FALSE	canonical	3	2511	junction_1	0	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTGGTTTTTGGTTTTGT	2356	False	NA	-8	True	ATTAAA	-14	NA	93729610	93728218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93728633_93729419
ENSMUSG00000026281.16_4	chr1	-	2967	5	NIC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	19	-15	combination_of_known_junctions	FALSE	canonical	3	119	junction_3	852.002494127805	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAATATATCTCACGAGC	2357	False	NA	-35	True	AATAAA	-9	NA	93729609	93720312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_93720666_93722447_93722646_93726101_93726193_93726497_93728633_93729419
ENSMUSG00000026281.16_5	chr1	-	3274	4	NIC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	18	-14	intron_retention	FALSE	canonical	3	1366	junction_2	499.33845124213	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATATATCTCACGAGCT	2356	False	NA	-34	True	AATAAA	-10	NA	93729610	93720311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_93720666_93722447_93722646_93726101_93728633_93729419
ENSMUSG00000026283.14_22	chr1	+	3074	1	ISM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	15057	0	14677	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAACATTTGAAAGTAGA	NA	False	NA	NA	False	AATAAA	-12	NA	93746743	93749817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_93746700_93749800
ENSMUSG00000026283.14_3	chr1	+	4522	8	FSM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	11	0	-7	0	multi-exon	FALSE	canonical	0	0	junction_4	74.6873756509937	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAACATTTGAAAGTAGA	NA	False	NA	NA	False	AATAAA	-12	NA	93731697	93749817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
ENSMUSG00000026288.15_7	chr1	+	3903	23	FSM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	37	2	37	-2	multi-exon	FALSE	canonical	3	151	junction_20	86.0654661453124	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGGCCTCCTGACTGT	9407	False	NA	12	True	AATAAA	-13	NA	87603997	87648222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
ENSMUSG00000026288.15_8	chr1	+	4086	22	FSM	ENSMUSG00000026288.15	ENSMUST00000167032.2	4125	22	37	2	37	-2	multi-exon	FALSE	canonical	3	377	junction_4	52.3837661581916	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGGCCTCCTGACTGT	9407	False	NA	12	True	AATAAA	-13	NA	87603997	87648222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
ENSMUSG00000026289.16_1	chr1	+	3006	17	FSM	ENSMUSG00000026289.16	ENSMUST00000113186.8	3004	17	-4	2	-4	-2	multi-exon	FALSE	canonical	3	160	junction_8	19.4867743610891	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTCCTTGCGTCTTGA	7304	False	NA	15	True	AATAAA	-24	NA	87683793	87720142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
ENSMUSG00000026289.16_5	chr1	+	3058	18	FSM	ENSMUSG00000026289.16	ENSMUST00000027512.13	3130	18	64	8	1	-2	multi-exon	FALSE	canonical	3	20	junction_7	58.4556141318301	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTCCTTGCGTCTTGA	7309	False	NA	15	True	AATAAA	-24	NA	87683798	87720142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87702534_87702592_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
ENSMUSG00000026289.16_55	chr1	+	1019	1	ISM	ENSMUSG00000026289.16	ENSMUST00000027512.13	3130	18	35391	6	12946	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCCTTGCGTCTTGATT	2152	False	NA	17	True	AATAAA	-26	NA	87719125	87720144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_87719100_87720100
ENSMUSG00000026301.17_0	chr1	-	2059	12	FSM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	-2	3	-2	2	multi-exon	FALSE	canonical	3	59	junction_8	12	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGACTCAGTAATTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	90017868	89969859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
ENSMUSG00000026301.17_3	chr1	-	2069	12	NNC	ENSMUSG00000026301.17	novel	2060	12	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_11	22.6412919060188	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGACTCAGTAATTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	90017868	89969859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017643
ENSMUSG00000026301.17_7	chr1	-	2148	11	NNC	ENSMUSG00000026301.17	novel	3210	19	NA	NA	-4	-3977	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	25.3724259778209	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	90017870	89974324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_89974541_89974795_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
ENSMUSG00000026301.17_9	chr1	-	1341	10	ISM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	-2	5528	-2	-5037	5prime_fragment	FALSE	canonical	3	59	junction_6	13.200261875442	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAGTAGCTATGAAATAA	NA	False	NA	NA	False	NA	NA	NA	90017868	89975384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
ENSMUSG00000026303.7_0	chr1	+	2242	16	FSM	ENSMUSG00000026303.7	ENSMUST00000027528.7	4499	16	-18	2275	-18	-2275	multi-exon	FALSE	canonical	0	0	junction_5	0.718021974284601	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGATGTTCTCTGCCTAC	NA	False	NA	NA	False	AATACA	-20	NA	90842788	90876589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_90842976_90849566_90849701_90855704_90855927_90856044_90856158_90857811_90857916_90859215_90859339_90861038_90861244_90863034_90863175_90865375_90865460_90867080_90867234_90867441_90867598_90869409_90869503_90870593_90870681_90871416_90871472_90873335_90873437_90876304
ENSMUSG00000026304.14_0	chr1	-	1639	6	FSM	ENSMUSG00000026304.14	ENSMUST00000027529.12	1831	6	187	5	74	-3	multi-exon	FALSE	canonical	1	2	junction_1	1.2	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAACACTTCATGAGGTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	90897196	90885859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_90886722_90886889_90886984_90887723_90887850_90888832_90888985_90891865_90892026_90896951
ENSMUSG00000026305.16_1	chr1	+	3523	8	NIC	ENSMUSG00000026305.16	novel	2050	13	NA	NA	8	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	28.1163762288972	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCTACTGGTTGTTCT	NA	False	NA	3	True	AATAAA	-17	NA	90926466	91045036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_90926616_90996284_90996372_91028298_91028335_91028906_91029033_91032848_91033020_91035019_91035113_91039877_91040020_91042317
ENSMUSG00000026305.16_11	chr1	+	3803	10	NIC	ENSMUSG00000026305.16	novel	2760	23	NA	NA	6	-1	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	32.7395257022742	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCTACTGGTTGTTCT	NA	False	NA	3	True	AATAAA	-17	NA	90981181	91045036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91038076_91038170_91039877_91040020_91042317
ENSMUSG00000026305.16_12	chr1	+	2117	12	NIC	ENSMUSG00000026305.16	novel	2760	23	NA	NA	13	-3	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	27.2156979494562	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGAGCTGTGTGGGTTTTG	NA	False	NA	NA	False	AATGAA	-6	NA	90981188	91056659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
ENSMUSG00000026305.16_2	chr1	+	3596	9	NIC	ENSMUSG00000026305.16	novel	2050	13	NA	NA	7	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	25.5951045123867	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCTACTGGTTGTTCT	NA	False	NA	3	True	AATAAA	-17	NA	90926465	91045036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_90926616_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91042317
ENSMUSG00000026305.16_25	chr1	+	2197	1	ISM	ENSMUSG00000026305.16	ENSMUST00000097649.10	3645	8	61663	2	3884	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGCCTACTGGTTGTTC	NA	False	NA	2	True	AATAAA	-16	NA	91042838	91045035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_91042800_91045000
ENSMUSG00000026305.16_6	chr1	+	3634	8	FSM	ENSMUSG00000026305.16	ENSMUST00000097649.10	3645	8	10	1	10	-1	multi-exon	FALSE	canonical	3	45	junction_4	18.7823190848223	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCTACTGGTTGTTCT	NA	False	NA	3	True	AATAAA	-17	NA	90981185	91045036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91032848_91033020_91035019_91035113_91039877_91040020_91042317
ENSMUSG00000026305.16_7	chr1	+	3703	9	NIC	ENSMUSG00000026305.16	novel	2760	23	NA	NA	13	-1	combination_of_known_junctions	FALSE	canonical	3	55	junction_5	16.4088390814219	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCTACTGGTTGTTCT	NA	False	NA	3	True	AATAAA	-17	NA	90981188	91045036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91042317
ENSMUSG00000026305.16_9	chr1	+	2181	13	NIC	ENSMUSG00000026305.16	novel	2760	23	NA	NA	25	1	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	25.9117090649511	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTGGGTTTTGTTTT	NA	False	NA	NA	False	AATGAA	-10	NA	90981200	91056663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
ENSMUSG00000026307.13_1	chr1	+	2171	12	FSM	ENSMUSG00000026307.13	ENSMUST00000027532.13	2202	12	18	13	-4	-13	multi-exon	FALSE	canonical	3	51	junction_11	10.6693350656825	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGTCTGCACCTGCTG	NA	False	NA	2	True	ATTAAA	-11	NA	91226077	91248784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91226171_91228249_91228363_91230490_91230592_91232995_91233177_91236035_91236164_91236372_91236538_91237518_91237626_91243210_91243248_91244785_91244870_91245313_91245414_91246759_91246836_91247798
ENSMUSG00000026307.13_11	chr1	+	2203	12	NIC	ENSMUSG00000026307.13	novel	2202	12	NA	NA	6	-13	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	21.6283407585266	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGTCTGCACCTGCTG	NA	False	NA	2	True	ATTAAA	-11	NA	91226097	91248784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_91226223_91228249_91228363_91230490_91230592_91232995_91233177_91236035_91236164_91236372_91236538_91237518_91237626_91243210_91243248_91244785_91244870_91245313_91245414_91246759_91246836_91247798
ENSMUSG00000026308.9_0	chr1	+	3055	8	FSM	ENSMUSG00000026308.9	ENSMUST00000027533.9	3089	8	28	6	28	-6	multi-exon	TRUE	canonical	0	0	junction_1	0.728431359084683	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCATGCTCTGTCTGCT	NA	False	NA	NA	False	AATAAA	-19	NA	91278765	91290132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91278858_91281327_91282175_91283173_91283310_91285055_91285143_91285476_91285633_91286509_91286699_91287057_91287204_91288730
ENSMUSG00000026309.15_15	chr1	-	1325	11	NIC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_10	148.435305773256	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTTGAGTGACTGGTC	NA	False	NA	-9	True	AATAAA	-17	NA	91326529	91303553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91326372
ENSMUSG00000026309.15_2	chr1	-	1380	12	FSM	ENSMUSG00000026309.15	ENSMUST00000027534.13	1368	12	-13	1	-2	0	multi-exon	FALSE	canonical	3	426	junction_9	38.9197096809944	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTTGAGTGACTGGTC	NA	False	NA	-9	True	AATAAA	-17	NA	91326518	91303553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91318853_91318920_91326372
ENSMUSG00000026309.15_3	chr1	-	1358	12	NIC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_9	124.787157635487	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTTGAGTGACTGGTC	NA	False	NA	-9	True	AATAAA	-17	NA	91326514	91303553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316169_91318328_91318386_91318853_91318920_91326372
ENSMUSG00000026311.17_0	chr1	+	5186	5	FSM	ENSMUSG00000026311.17	ENSMUST00000027538.9	5826	5	11	629	-7	-629	multi-exon	FALSE	canonical	3	11	junction_1	8.86002257333467	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCTTCCCACATGCCTT	8966	False	NA	9	True	AATAAA	-18	NA	91468446	91486682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91468587_91471872_91472020_91474649_91474953_91479775_91480162_91482472
ENSMUSG00000026311.17_10	chr1	+	5043	2	ISM	ENSMUSG00000026311.17	ENSMUST00000027538.9	5826	5	11518	4	11152	-4	3prime_fragment	FALSE	canonical	3	28	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTGTCTGGCTCTCTA	NA	False	NA	3	True	AATAAA	-15	NA	91479953	91487307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_91480162_91482472
ENSMUSG00000026311.17_12	chr1	+	3492	1	ISM	ENSMUSG00000026311.17	ENSMUST00000027538.9	5826	5	15376	8	15010	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTTGAGTGTCTGGCTC	788	False	NA	-1	True	AATAAA	-11	NA	91483811	91487303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_91483800_91487300
ENSMUSG00000026311.17_3	chr1	+	5192	5	FSM	ENSMUSG00000026311.17	ENSMUST00000086843.11	2490	5	168	-2870	-2	-631	multi-exon	FALSE	canonical	3	23	junction_1	3.93700393700591	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTCCTTCCCACATGCC	8953	False	NA	7	True	AATAAA	-16	NA	91468433	91486680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91468587_91471877_91472020_91474649_91474953_91479775_91480162_91482472
ENSMUSG00000026311.17_6	chr1	+	1221	4	FSM	ENSMUSG00000026311.17	ENSMUST00000190484.7	735	4	-22	-464	-4	171	multi-exon	FALSE	canonical	1	2	junction_2	11.2644968324772	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGATATAGGGAGAAGGA	8951	False	NA	NA	False	AAAACA	-18	NA	91468431	91483010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91468587_91471877_91472020_91479775_91480162_91482472
ENSMUSG00000026311.17_9	chr1	+	4787	3	ISM	ENSMUSG00000026311.17	ENSMUST00000027538.9	5826	5	6324	631	5958	-631	3prime_fragment	FALSE	canonical	3	28	junction_2	2	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTCCTTCCCACATGCC	NA	False	NA	7	True	AATAAA	-16	NA	91474759	91486680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_91474953_91479775_91480162_91482472
ENSMUSG00000026313.17_0	chr1	-	2764	1	ISM	ENSMUSG00000026313.17	ENSMUST00000097644.9	8100	27	248797	2	3320	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTCTGCTACCTCCTTGT	NA	False	NA	-2	True	AATAAA	-21	NA	91859266	91856502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_91856500_91859300
ENSMUSG00000026313.17_10	chr1	-	4348	27	NNC	ENSMUSG00000026313.17	novel	8100	27	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_11	20.8533907392885	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACGAAAAAAAAAAAAAAA	6609	False	NA	NA	False	AAGAAA	-5	NA	92108008	91860483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896059_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909990_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977_92076217_92107723
ENSMUSG00000026313.17_16	chr1	-	4335	27	NIC	ENSMUSG00000026313.17	novel	8100	27	NA	NA	9	-5	combination_of_known_junctions	FALSE	canonical	3	55	junction_11	20.8533907392885	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACGAAAAAAAAAAAAAAA	6607	False	NA	NA	False	AAGAAA	-5	NA	92108010	91860483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896059_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909975_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977_92076217_92107723
ENSMUSG00000026313.17_17	chr1	-	4868	27	NIC	ENSMUSG00000026313.17	novel	8100	27	NA	NA	17	551	combination_of_known_junctions	FALSE	canonical	3	32	junction_11	23.5064198709189	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATATATATTCCACTGTA	6615	False	NA	NA	False	NA	NA	NA	92108002	91859927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896074_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909975_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977_92076217_92107723
ENSMUSG00000026313.17_2	chr1	-	4327	27	NNC	ENSMUSG00000026313.17	novel	8100	27	NA	NA	17	-5	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_11	23.5064198709189	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACGAAAAAAAAAAAAAAA	6615	False	NA	NA	False	AAGAAA	-5	NA	92108002	91860483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896074_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909990_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977_92076217_92107723
ENSMUSG00000026313.17_5	chr1	-	4654	27	NIC	ENSMUSG00000026313.17	novel	8100	27	NA	NA	-1	560	combination_of_known_junctions	FALSE	canonical	3	12	junction_26	27.7003460555574	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCACTGTATTCCAAGCT	6597	False	NA	NA	False	NA	NA	NA	92108020	91859918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896059_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909975_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977_92076217_92107979
ENSMUSG00000026313.17_62	chr1	-	4074	27	FSM	ENSMUSG00000026313.17	ENSMUST00000097644.9	8100	27	43	3983	-1	-5	multi-exon	FALSE	canonical	3	12	junction_26	29.6698799314714	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACGAAAAAAAAAAAAAAA	6597	False	NA	NA	False	AAGAAA	-5	NA	92108020	91860483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896074_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909975_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977_92076217_92107979
ENSMUSG00000026315.14_0	chr1	+	1706	7	FSM	ENSMUSG00000026315.14	ENSMUST00000112706.4	4581	7	1	2874	1	285	multi-exon	FALSE	canonical	0	0	junction_5	1.34370962471642	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGCCAAGGTGATTTC	6207	False	NA	NA	False	ATTAAA	-14	NA	107517736	107535340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_107518018_107525184_107525368_107526629_107526768_107530529_107530648_107532333_107532477_107533513_107533667_107534650
ENSMUSG00000026317.8_0	chr8	+	2327	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	748	3782	-145	2879	multi-exon	FALSE	canonical	3	162	junction_1	24.5	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGGAGGTATGATGCCTA	NA	False	NA	9	True	TATAAA	-17	NA	14938858	14947938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_14939119_14944571_14945231_14946530
ENSMUSG00000026317.8_1	chr8	+	2460	4	NIC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-147	2878	combination_of_known_junctions	FALSE	canonical	3	37	junction_2	81.7897032367495	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGGAGGTATGATGCCT	NA	False	NA	8	True	TATAAA	-16	NA	14938856	14947937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530
ENSMUSG00000026317.8_3	chr8	+	1923	2	ISM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	6599	3788	5351	2873	3prime_fragment	FALSE	canonical	3	211	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTATGAGGAGGTATGA	NA	False	NA	3	True	TATAAA	-11	NA	14944709	14947932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_14945231_14946530
ENSMUSG00000026317.8_4	chr8	+	4140	1	ISM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	9465	5	8217	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATTTATGTGCCATATA	NA	False	NA	1	True	NA	NA	NA	14947575	14951715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_14947600_14951700
ENSMUSG00000026319.14_1	chr1	+	913	2	FSM	ENSMUSG00000026319.14	ENSMUST00000191150.2	874	2	-48	9	6	-9	multi-exon	FALSE	canonical	3	51	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAATGAGATGTGTCTG	NA	False	NA	2	True	AATAAA	-4	NA	105591613	105592866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_105592359_105592698
ENSMUSG00000026319.14_16	chr1	+	5364	29	FSM	ENSMUSG00000026319.14	ENSMUST00000086721.10	5414	29	-21	71	9	-66	multi-exon	FALSE	canonical	2	6	junction_22	32.829491470385	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGTGTATTTTGTTT	NA	False	NA	17	True	AATAAA	-17	NA	105591616	105682845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006_105615121_105619630_105619835_105619936_105620029_105620608_105620903_105623152_105623229_105624225_105624322_105631655_105631769_105641573_105641665_105644502_105644575_105646499_105646641_105647176_105647342_105648992_105649141_105653373_105653531_105654067_105654192_105655664_105655714_105658925_105659006_105662242_105662350_105663647_105663748_105668737_105668821_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
ENSMUSG00000026319.14_38	chr1	+	1302	1	ISM	ENSMUSG00000026319.14	ENSMUST00000086721.10	5414	29	89906	71	12839	-66	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGTGTATTTTGTTT	3368	False	NA	17	True	AATAAA	-17	NA	105681543	105682845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_105681500_105682800
ENSMUSG00000026319.14_5	chr1	+	5363	29	FSM	ENSMUSG00000026319.14	ENSMUST00000039173.13	4328	29	8	-1043	8	-68	multi-exon	FALSE	canonical	3	86	junction_7	18.9304244376019	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGCTGTGTATTTTGT	NA	False	NA	15	True	AATAAA	-15	NA	105591615	105682843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006_105615121_105619630_105619835_105619936_105620029_105620608_105620903_105623152_105623229_105624225_105624322_105631655_105631769_105641573_105641665_105644502_105644575_105646499_105646641_105647176_105647342_105648992_105649141_105653373_105653531_105654067_105654192_105655664_105655714_105658925_105659006_105662242_105662350_105663647_105663748_105668159_105668243_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
ENSMUSG00000026319.14_6	chr1	+	5354	29	NNC	ENSMUSG00000026319.14	novel	4328	29	NA	NA	9	-67	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_19	26.82273631965	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGCTGTGTATTTTGTT	NA	False	NA	16	True	AATAAA	-16	NA	105591616	105682844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006_105615121_105619630_105619835_105619936_105620029_105620608_105620903_105623152_105623229_105624225_105624322_105631655_105631769_105641573_105641665_105644502_105644575_105646499_105646641_105647176_105647342_105648992_105649141_105653373_105653531_105654067_105654192_105655664_105655714_105658934_105659006_105662242_105662350_105663647_105663748_105668159_105668243_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
ENSMUSG00000026319.14_7	chr1	+	4921	5	ISM	ENSMUSG00000026319.14	ENSMUST00000191293.7	5109	22	-556	47262	2	4094	5prime_fragment	FALSE	canonical	3	95	junction_1	9.12071817347735	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105591609	105618960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006
ENSMUSG00000026321.9_3	chr1	+	1087	4	FSM	ENSMUSG00000026321.9	ENSMUST00000187812.2	1041	4	-52	6	-20	-6	multi-exon	FALSE	canonical	3	7	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGAAATGGTTGGCTTG	7016	False	NA	NA	False	CATAAA	-12	NA	105708422	105742122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_105708555_105735867_105735950_105737054_105737181_105741375
ENSMUSG00000026321.9_4	chr1	+	4640	10	FSM	ENSMUSG00000026321.9	ENSMUST00000027559.9	5029	10	-17	406	-17	-406	multi-exon	FALSE	canonical	1	2	junction_5	2.39340658094867	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTATCATCATCTCTCCAT	7019	False	NA	NA	False	AATAAA	-41	NA	105708425	105775303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_105708555_105735867_105735950_105737054_105737181_105741375_105741520_105745393_105745488_105747594_105747690_105749202_105749317_105752724_105752778_105754715_105755461_105772245
ENSMUSG00000026333.15_0	chr1	+	1828	8	FSM	ENSMUSG00000026333.15	ENSMUST00000112844.10	2046	8	14	204	7	-204	multi-exon	FALSE	canonical	3	41	junction_1	7.99744857273052	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCATGCGTAGAATTCAG	NA	False	NA	NA	False	AATAAA	-17	NA	97697910	97720490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710651_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ENSMUSG00000026333.15_1	chr1	+	1698	8	NIC	ENSMUSG00000026333.15	novel	2046	8	NA	NA	7	-123	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	18.8148877222268	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTTTCTATATGGGTAC	NA	False	NA	NA	False	AATAAA	-19	NA	97697910	97720571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_97697981_97703171_97703318_97705050_97705245_97710862_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ENSMUSG00000026333.15_10	chr1	+	1564	8	FSM	ENSMUSG00000026333.15	ENSMUST00000027571.13	2494	8	-18	948	0	-208	multi-exon	FALSE	canonical	3	8	junction_3	17.1939714162035	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTATACCATGCGTAGAAT	NA	False	NA	NA	False	AATAAA	-13	NA	97697903	97720486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710918_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ENSMUSG00000026333.15_6	chr1	+	1222	5	ISM	ENSMUSG00000026333.15	ENSMUST00000138142.8	1851	7	12913	241	5724	-204	3prime_fragment	FALSE	canonical	3	50	junction_3	5.16599457994296	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCATGCGTAGAATTCAG	NA	False	NA	NA	False	AATAAA	-17	NA	97710847	97720490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ENSMUSG00000026335.17_0	chr1	-	3715	24	NIC	ENSMUSG00000026335.17	novel	4095	26	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	5.92422216983633	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTCAGAGTGTATTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	98023339	97748819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_97749714_97753561_97753766_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375_97862464_97872344_97872403_97903509_97903631_97904581_97904985_98023209
ENSMUSG00000026335.17_1	chr1	-	3773	25	NIC	ENSMUSG00000026335.17	novel	4095	26	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_2	5.09884927105017	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTCAGAGTGTATTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	98023343	97748819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_97749714_97750660_97750715_97753561_97753766_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375_97862464_97872344_97872403_97903509_97903631_97904581_97904985_98023209
ENSMUSG00000026335.17_12	chr1	-	3473	23	NIC	ENSMUSG00000026335.17	novel	4095	26	NA	NA	42	2	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	5.87560441765162	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGCAGTCAGAGTGTATT	NA	False	NA	-10	True	AATAAA	-14	NA	98023304	97748822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_97749714_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375_97862464_97872344_97872403_97903509_97903631_97904581_97904985_98023209
ENSMUSG00000026335.17_4	chr1	-	3765	25	NIC	ENSMUSG00000026335.17	novel	4102	26	NA	NA	11	2	combination_of_known_junctions	TRUE	canonical	1	3	junction_3	6.28476442588653	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCAGAGTGTATTTTTGTG	NA	False	NA	-4	True	AATAAA	-20	NA	98023335	97748816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_97749714_97750660_97750715_97753561_97753763_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375_97862464_97872344_97872403_97903509_97903631_97904581_97904985_98023209
ENSMUSG00000026335.17_8	chr1	-	3749	24	FSM	ENSMUSG00000026335.17	ENSMUST00000161567.8	3630	24	-117	-2	-117	2	multi-exon	FALSE	canonical	1	5	junction_2	5.01867966278542	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGCAGTCAGAGTGTATT	5663	False	NA	-10	True	AATAAA	-14	NA	97905097	97748822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_97749714_97750660_97750715_97753561_97753766_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375_97862464_97872344_97872403_97903509_97903631_97904581
ENSMUSG00000026339.19_1	chr1	+	7231	24	FSM	ENSMUSG00000026339.19	ENSMUST00000036025.16	7274	24	35	8	9	-8	multi-exon	FALSE	canonical	3	57	junction_5	11.149101195474	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTAATTTGGTTTCATT	NA	False	NA	2	True	NA	NA	NA	121358812	121434181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121373368_121373468_121375952_121376010_121383799_121383901_121389192_121389230_121389615_121389709_121389961_121390013_121390827_121390915_121403760_121403878_121405563_121405627_121408543_121408618_121409724_121409807_121410329_121410396_121411015_121411070_121414331_121414395_121418850_121418960_121420633_121420717_121422124_121422163_121424712_121424798_121426936_121427051_121428918
ENSMUSG00000026339.19_15	chr1	+	3750	1	ISM	ENSMUSG00000026339.19	ENSMUST00000036025.16	7274	24	71660	2	11492	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGGTTTCATTTAAGAA	NA	False	NA	8	True	NA	NA	NA	121430437	121434187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_121430400_121434200
ENSMUSG00000026339.19_2	chr1	+	7219	24	FSM	ENSMUSG00000026339.19	ENSMUST00000112621.2	2338	24	-18	-4863	-3	-9	multi-exon	FALSE	canonical	2	9	junction_9	17.1308761805856	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTTTAATTTGGTTTCAT	NA	False	NA	1	True	NA	NA	NA	121358820	121434180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121373368_121373468_121375952_121376010_121383799_121383901_121389192_121389230_121389615_121389709_121389964_121390013_121390827_121390915_121403760_121403878_121405563_121405627_121408543_121408618_121409724_121409807_121410329_121410396_121411015_121411070_121414331_121414395_121418850_121418960_121420633_121420717_121422124_121422163_121424712_121424798_121426936_121427051_121428918
ENSMUSG00000026341.17_0	chr1	-	2522	13	FSM	ENSMUSG00000026341.17	ENSMUST00000027579.17	2554	13	25	7	5	-6	multi-exon	FALSE	canonical	3	364	junction_12	606.954190107366	1420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTTCCTGATGGTTTTTC	NA	False	NA	-10	True	AATAAA	-14	NA	125363439	125320648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
ENSMUSG00000026341.17_1	chr1	-	2622	12	FSM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	-64	7	-64	-7	multi-exon	FALSE	canonical	3	2308	junction_6	123.717286351378	2111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCTTCCTGATGGTTTTT	NA	False	NA	-11	True	AATAAA	-13	NA	125363348	125320649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
ENSMUSG00000026342.11_0	chr1	+	2593	16	NIC	ENSMUSG00000026342.11	novel	756	6	NA	NA	1	-93	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	24.987107786928	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGGGTGCTGCTTCCT	NA	False	NA	NA	False	TATAAA	-17	NA	125488332	125523464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_125488555_125490011_125490103_125490236_125490379_125494204_125494349_125496283_125496347_125498283_125498366_125500049_125500241_125502402_125502485_125503908_125503997_125506999_125507065_125512189_125512295_125512810_125512971_125515101_125515193_125517547_125517703_125518769_125518867_125522649
ENSMUSG00000026342.11_2	chr1	+	2626	16	FSM	ENSMUSG00000026342.11	ENSMUST00000027580.11	2733	16	14	93	14	-93	multi-exon	FALSE	canonical	3	89	junction_1	11.5808270669912	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGGGTGCTGCTTCCT	NA	False	NA	NA	False	TATAAA	-17	NA	125488766	125523464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_125489022_125490011_125490103_125490236_125490379_125494204_125494349_125496283_125496347_125498283_125498366_125500049_125500241_125502402_125502485_125503908_125503997_125506999_125507065_125512189_125512295_125512810_125512971_125515101_125515193_125517547_125517703_125518769_125518867_125522649
ENSMUSG00000026344.10_0	chr1	-	1721	3	FSM	ENSMUSG00000026344.10	ENSMUST00000159417.2	6464	3	72	4671	72	-9	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATATTAAGCCCCTTG	NA	False	NA	NA	False	AATAAA	-14	NA	125839879	125800029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_125801309_125838127_125838266_125839575
ENSMUSG00000026347.14_0	chr1	-	1733	8	FSM	ENSMUSG00000026347.14	ENSMUST00000185560.2	3488	8	1753	2	226	-2	multi-exon	FALSE	canonical	2	4	junction_7	2.65729646253404	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCCCGAATCTGCATATC	NA	False	NA	NA	False	AATAAA	-13	NA	127605532	127418636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_127419398_127423454_127423597_127427920_127428033_127447081_127447179_127479062_127479155_127480497_127480542_127596387_127596508_127605167
ENSMUSG00000026348.8_0	chr1	+	2485	7	ISM	ENSMUSG00000026348.8	ENSMUST00000038006.8	2717	10	16312	11	-11032	-11	3prime_fragment	FALSE	canonical	0	0	junction_4	1.10554159678513	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAACAACACTTGGAAG	NA	False	NA	NA	False	AATAAA	-5	NA	127673461	127695704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_127673563_127676725_127676963_127681524_127681619_127685740_127685837_127687395_127687569_127693616_127693716_127694019
ENSMUSG00000026349.15_0	chr1	+	4461	10	FSM	ENSMUSG00000026349.15	ENSMUST00000112570.2	4511	10	44	6	44	-6	multi-exon	FALSE	canonical	3	163	junction_9	104.758039851747	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTACAGGATTGTGTGA	NA	False	NA	21	True	ATTAAA	-15	NA	127701944	127733663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898_127731031_127731128
ENSMUSG00000026349.15_11	chr1	+	4869	9	NIC	ENSMUSG00000026349.15	novel	6738	9	NA	NA	49	-1	intron_retention	FALSE	canonical	3	50	junction_6	145.842166399159	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGGATTGTGTGAACTAT	NA	False	NA	26	True	ATTAAA	-20	NA	127701949	127733668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725934_127727126_127727291_127729342_127729414_127729898
ENSMUSG00000026349.15_2	chr1	+	4558	9	FSM	ENSMUSG00000026349.15	ENSMUST00000027587.15	6738	9	45	2135	45	-6	multi-exon	FALSE	canonical	3	399	junction_6	47.8289595851718	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTACAGGATTGTGTGA	NA	False	NA	21	True	ATTAAA	-15	NA	127701945	127733663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898
ENSMUSG00000026349.15_69	chr1	+	2131	1	ISM	ENSMUSG00000026349.15	ENSMUST00000027587.15	6738	9	30010	1757	7603	372	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCTATAAAAGAGTGACTC	545	False	NA	NA	False	ATTAAA	-19	NA	127731910	127734041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_127731900_127734000
ENSMUSG00000026349.15_7	chr1	+	4769	10	NIC	ENSMUSG00000026349.15	novel	4511	10	NA	NA	46	-6	combination_of_known_junctions	FALSE	canonical	3	50	junction_6	159.507575577672	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTACAGGATTGTGTGA	NA	False	NA	21	True	ATTAAA	-15	NA	127701946	127733663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725934_127727126_127727291_127729342_127729414_127729898_127731031_127731128
ENSMUSG00000026353.10_1	chr1	+	2179	13	FSM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	142	1792	142	566	multi-exon	FALSE	canonical	3	326	junction_2	38.8918550456119	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACCAGAATGATCTTA	236	False	NA	8	True	AATAAA	-11	NA	128172040	128205323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
ENSMUSG00000026353.10_3	chr1	+	2182	13	NNC	ENSMUSG00000026353.10	novel	4113	13	NA	NA	142	566	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_6	101.309858848979	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACCAGAATGATCTTA	236	False	NA	8	True	AATAAA	-11	NA	128172040	128205323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188567_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
ENSMUSG00000026355.12_0	chr1	-	2916	17	FSM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	-7	1	-7	-1	multi-exon	FALSE	canonical	3	2842	junction_6	235.478734443261	7019	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCTGTTGGATTCATTT	NA	False	NA	-22	True	AATAAA	-16	NA	128287408	128259327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
ENSMUSG00000026356.16_2	chr1	-	2139	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	33	3	33	-3	multi-exon	TRUE	canonical	3	1712	junction_8	135.919976456737	2831	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGATAGTGTTGTGTGAC	NA	False	NA	-7	True	AATAAA	-11	NA	128345063	128291446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
ENSMUSG00000026361.10_1	chr1	-	2798	17	FSM	ENSMUSG00000026361.10	ENSMUST00000018337.9	11586	17	81	8707	81	-1346	multi-exon	FALSE	canonical	3	314	junction_10	26.4054178862975	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTTATGTGTGTGTGTT	NA	False	NA	-7	True	GATAAA	-9	NA	143578550	143483244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_143484296_143485107_143485250_143491040_143491142_143493016_143493179_143503239_143503328_143503583_143503620_143510769_143510828_143543362_143543428_143545727_143545807_143547067_143547167_143553376_143553594_143561660_143561750_143567012_143567066_143567151_143567215_143571130_143571201_143574954_143575061_143578231
ENSMUSG00000026361.10_2	chr1	-	3383	1	ISM	ENSMUSG00000026361.10	ENSMUST00000018337.9	11586	17	95888	4823	29572	2538	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCAATGAGTTAAATCCT	NA	False	NA	-13	True	AATAAA	-16	NA	143482743	143479360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_143479400_143482700
ENSMUSG00000026365.16_0	chr1	-	4241	22	NIC	ENSMUSG00000026365.16	novel	4365	22	NA	NA	-14	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	2.84760312147163	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAACTTCTTGCCTATGT	NA	False	NA	NA	False	AATAAA	-8	NA	140111032	140013602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_140014261_140016395_140016579_140026607_140026785_140028545_140028723_140029322_140029497_140030074_140030285_140030445_140030623_140033132_140033310_140036229_140036410_140036495_140036682_140040170_140040345_140046324_140046502_140047608_140047792_140063884_140064062_140064433_140064629_140071668_140071843_140075392_140075564_140082206_140082399_140084997_140085075_140090283_140090390_140090688_140090875_140110902
ENSMUSG00000026365.16_2	chr1	-	550	3	ISM	ENSMUSG00000026365.16	ENSMUST00000148225.2	3415	6	114	17202	-17	-17202	5prime_fragment	FALSE	canonical	3	9	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTATTTGGATATC	NA	False	NA	NA	False	AATAAA	-12	NA	140111035	140090158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_140090390_140090688_140090875_140110902
ENSMUSG00000026365.16_4	chr1	-	4239	22	FSM	ENSMUSG00000026365.16	ENSMUST00000066859.13	4361	22	117	5	-14	-2	multi-exon	FALSE	canonical	1	1	junction_3	2.68361958163912	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTTCTTGCCTATGTA	NA	False	NA	NA	False	AATAAA	-9	NA	140111032	140013601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_140014261_140016395_140016579_140026607_140026785_140028545_140028723_140029322_140029497_140030074_140030285_140030445_140030623_140033132_140033310_140036229_140036410_140036495_140036679_140040170_140040345_140046324_140046502_140047608_140047792_140063884_140064062_140064433_140064629_140071668_140071843_140075392_140075564_140082206_140082399_140084997_140085075_140090283_140090390_140090688_140090875_140110902
ENSMUSG00000026374.15_1	chr1	-	1690	6	FSM	ENSMUSG00000026374.15	ENSMUST00000027623.9	7063	6	232	5141	52	-269	multi-exon	FALSE	canonical	0	0	junction_5	408.588007655633	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTCATGTGATTGGC	NA	False	NA	NA	False	AGTAAA	-11	NA	118238914	118227648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238730
ENSMUSG00000026374.15_2	chr1	-	2819	5	FSM	ENSMUSG00000026374.15	ENSMUST00000188512.7	656	5	-1193	-970	57	-269	multi-exon	FALSE	canonical	3	922	junction_2	75.9584590417684	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTCATGTGATTGGC	NA	False	NA	NA	False	AGTAAA	-11	NA	118238909	118227648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502
ENSMUSG00000026374.15_4	chr1	-	1656	1	ISM	ENSMUSG00000026374.15	ENSMUST00000027623.9	7063	6	11241	3742	9811	1130	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTAGTGTGCTGCTGTTT	NA	False	NA	-7	True	AATAAA	-21	NA	118227905	118226249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_118226200_118227900
ENSMUSG00000026377.13_0	chr1	+	1627	7	FSM	ENSMUSG00000026377.13	ENSMUST00000027626.13	1889	7	29	233	14	-233	multi-exon	FALSE	canonical	3	402	junction_6	29.1985539976821	377	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAAGCTTCCTTTTTGTCC	NA	False	NA	23	True	AATATA	-17	NA	118249597	118261319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_118249728_118251311_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
ENSMUSG00000026380.11_1	chr1	+	9222	16	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	472.572421257666	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACCCATGTGGCTGGAAC	NA	False	NA	11	True	AATAAA	-12	NA	118555677	118612890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117_118609404_118609440
ENSMUSG00000026380.11_106	chr1	+	3300	1	FSM	ENSMUSG00000088363.3	ENSMUST00000157738.3	130	1	40	-3210	40	3210	mono-exon	FALSE	NA	NA	NA	NA	NA	1380	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACCCATGTGGCTGGAAC	NA	False	NA	11	True	AATAAA	-12	NA	118609590	118612890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_118609600_118612900
ENSMUSG00000026380.11_107	chr1	+	4727	2	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	52451	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACCCATGTGGCTGGAAC	NA	False	NA	11	True	AATAAA	-12	NA	118608126	118612890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_118609404_118609440
ENSMUSG00000026380.11_2	chr1	+	9257	15	FSM	ENSMUSG00000026380.11	ENSMUST00000027629.10	9269	15	2	10	2	-10	multi-exon	FALSE	canonical	3	1477	junction_7	202.362891350955	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAACCCATGTGGCTGGA	NA	False	NA	9	True	AATAAA	-10	NA	118555677	118612888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117
ENSMUSG00000026383.15_0	chr1	-	6452	25	FSM	ENSMUSG00000026383.15	ENSMUST00000052404.13	6442	25	-13	3	-13	-3	multi-exon	FALSE	canonical	3	76	junction_7	8.61674322983393	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTCATGTTTTATGAGC	NA	False	NA	-14	True	AATAAA	-10	NA	119576679	119472769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
ENSMUSG00000026383.15_1	chr1	-	2752	1	ISM	ENSMUSG00000026383.15	ENSMUST00000052404.13	6442	25	101147	1	32635	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCATGTTTTATGAGCTG	NA	False	NA	-12	True	AATAAA	-12	NA	119475519	119472767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_119472800_119475500
ENSMUSG00000026383.15_3	chr1	-	5923	25	NNC	ENSMUSG00000026383.15	novel	6442	25	NA	NA	-13	-529	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_2	19.1973938480085	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGATGCTTTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	119576679	119473295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_119476926_119477616_119477745_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
ENSMUSG00000026384.14_0	chr1	-	3701	1	ISM	ENSMUSG00000026384.14	ENSMUST00000064091.12	10874	27	181439	7	31463	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTAATGACTTCGTTTCA	NA	False	NA	-7	True	AATAAA	-14	NA	119583904	119580203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_119580200_119583900
ENSMUSG00000026384.14_1	chr1	-	5154	27	FSM	ENSMUSG00000026384.14	ENSMUST00000064091.12	10874	27	138	5582	-128	-5	multi-exon	FALSE	canonical	3	29	junction_24	12.095832819514	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCAAACAGAAGTCCCCC	NA	False	NA	NA	False	AATAAA	-10	NA	119765205	119585778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_119587648_119595243_119595380_119603278_119603428_119606484_119606614_119607778_119607926_119610213_119610276_119610434_119610526_119612196_119612364_119615339_119615497_119619330_119619388_119619475_119619560_119620479_119620640_119633884_119634044_119635505_119635632_119643676_119643746_119649593_119649767_119653762_119653827_119669084_119669174_119671081_119671170_119692760_119692882_119693158_119693212_119693607_119693653_119700778_119700858_119700958_119701002_119711211_119711320_119730052_119730208_119764631
ENSMUSG00000026384.14_17	chr1	-	10428	24	NIC	ENSMUSG00000026384.14	novel	10874	27	NA	NA	-46	-7	combination_of_known_splicesites	FALSE	canonical	1	2	junction_19	16.2450515949704	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTAATGACTTCGTTTCA	NA	False	NA	-7	True	AATAAA	-14	NA	119765123	119580203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_119587648_119595243_119595380_119603278_119603428_119606484_119606614_119607778_119607926_119610213_119610276_119610434_119610526_119612196_119612364_119615339_119615497_119619330_119619388_119619475_119619560_119620479_119620640_119633884_119634044_119635505_119635632_119643676_119643746_119649593_119649767_119653762_119653827_119669084_119669174_119671081_119671170_119700778_119700858_119700958_119701002_119711211_119711320_119730052_119730208_119764631
ENSMUSG00000026384.14_3	chr1	-	10622	27	NIC	ENSMUSG00000026384.14	novel	10874	27	NA	NA	2	-3	combination_of_known_junctions	TRUE	canonical	1	1	junction_23	15.4919811286336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGACTTCGTTTCAAGGT	NA	False	NA	-3	True	AATAAA	-18	NA	119765075	119580199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_119587648_119595243_119595380_119603278_119603428_119606484_119606614_119607778_119607926_119610213_119610276_119610434_119610526_119612196_119612364_119615339_119615497_119619330_119619388_119619475_119619560_119620479_119620640_119633884_119634044_119635505_119635632_119643676_119643746_119649593_119649767_119653762_119653827_119669084_119669174_119671081_119671170_119692760_119692882_119693158_119693212_119693607_119693653_119700778_119700877_119700958_119701002_119711211_119711320_119730052_119730208_119764631
ENSMUSG00000026384.14_8	chr1	-	10679	26	NIC	ENSMUSG00000026384.14	novel	10874	27	NA	NA	84	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_24	15.3479119100938	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGACTTCGTTTCAAGGT	NA	False	NA	-3	True	AATAAA	-18	NA	119765259	119580199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_119587648_119595243_119595380_119603278_119603428_119606484_119606614_119607778_119607926_119610213_119610276_119610434_119610526_119612196_119612364_119615339_119615497_119619330_119619388_119619475_119619560_119620479_119620640_119633884_119634044_119635505_119635632_119643676_119643746_119649593_119649767_119653762_119653827_119669084_119669174_119671081_119671170_119692760_119692882_119693158_119693212_119693607_119693653_119700778_119700858_119700958_119701002_119730052_119730208_119764631
ENSMUSG00000026385.17_0	chr1	-	517	4	FSM	ENSMUSG00000026385.17	ENSMUST00000027634.13	569	4	40	12	9	-2	multi-exon	FALSE	canonical	3	2709	junction_1	24.2532930181083	497	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTGGGTTACTCTGTT	NA	False	NA	-13	True	ATTAAA	-17	NA	120048768	120041021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048674
ENSMUSG00000026388.16_0	chr1	+	498	6	FSM	ENSMUSG00000026388.16	ENSMUST00000112644.9	488	6	-17	7	-9	-7	multi-exon	FALSE	canonical	3	34	junction_1	7.2773621594641	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGCCTTGGTTTGATTT	NA	False	NA	8	True	AATAAA	-9	NA	120048907	120115912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120099130_120099213_120115770
ENSMUSG00000026388.16_4	chr1	+	187	1	Genic_Genomic	ENSMUSG00000026388.16	novel	NA	NA	NA	NA	12916	16	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAATTATTTAACTTGC	NA	False	NA	NA	False	NA	NA	NA	120101125	120101312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_+_120101100_120101300
ENSMUSG00000026389.17_3	chr1	-	2758	5	FSM	ENSMUSG00000026389.17	ENSMUST00000112640.8	2752	5	-1	-5	-1	5	multi-exon	FALSE	canonical	3	36	junction_4	6.57647321898295	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTAAAATTGTCCTTT	NA	False	NA	-16	True	NA	NA	NA	120193015	120154147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120192961
ENSMUSG00000026389.17_4	chr1	-	2826	5	ISM	ENSMUSG00000026389.17	ENSMUST00000112643.2	2873	6	2459	-235	177	5	3prime_fragment	FALSE	canonical	3	10	junction_4	16.3554272337961	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTAAAATTGTCCTTT	NA	False	NA	-16	True	NA	NA	NA	120197976	120154147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120197854
ENSMUSG00000026389.17_5	chr1	-	2034	3	ISM	ENSMUSG00000026389.17	ENSMUST00000112640.8	2752	5	23495	-5	23466	5	3prime_fragment	FALSE	canonical	3	38	junction_1	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTAAAATTGTCCTTT	NA	False	NA	-16	True	NA	NA	NA	120169519	120154147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_120155659_120161971_120162137_120169161
ENSMUSG00000026389.17_6	chr1	-	2335	4	ISM	ENSMUSG00000026389.17	ENSMUST00000112640.8	2752	5	21386	-5	21357	5	3prime_fragment	FALSE	canonical	3	38	junction_1	5.71547606649408	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTAAAATTGTCCTTT	NA	False	NA	-16	True	NA	NA	NA	120171628	120154147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497
ENSMUSG00000026393.11_0	chr1	-	3989	10	FSM	ENSMUSG00000026393.11	ENSMUST00000186017.7	5258	10	25	1244	-20	-7	multi-exon	FALSE	canonical	3	136	junction_1	7.19739321808962	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTAAGTTTTAGTATCTA	NA	False	NA	-19	True	AATAAA	-9	NA	138547462	138411856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_138414849_138426313_138426428_138430308_138430404_138443362_138443471_138444265_138444375_138460474_138460586_138462101_138462165_138471940_138472082_138489440_138489524_138547289
ENSMUSG00000026393.11_4	chr1	-	3784	8	FSM	ENSMUSG00000026393.11	ENSMUST00000027642.5	3737	8	-49	2	-19	-2	multi-exon	TRUE	canonical	2	8	junction_1	49.1424418587104	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTAGTATCTATCAGG	NA	False	NA	-14	True	AATAAA	-14	NA	138547461	138411851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_138414849_138443362_138443471_138444265_138444375_138460474_138460586_138462101_138462165_138471940_138472082_138489440_138489524_138547289
ENSMUSG00000026393.11_6	chr1	-	1650	1	ISM	ENSMUSG00000026393.11	ENSMUST00000186017.7	5258	10	133986	1239	133911	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTAGTATCTATCAGG	NA	False	NA	-14	True	AATAAA	-14	NA	138413501	138411851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_138411900_138413500
ENSMUSG00000026398.15_0	chr1	-	1677	1	ISM	ENSMUSG00000026398.15	ENSMUST00000027649.14	4733	9	116197	4	96332	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACTTTTTAAATCCTTTA	NA	False	NA	-18	True	AATAAA	-19	NA	136771989	136770312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_136770300_136772000
ENSMUSG00000026398.15_1	chr1	-	3093	9	FSM	ENSMUSG00000026398.15	ENSMUST00000192929.6	1756	9	27	-1364	27	177	multi-exon	FALSE	canonical	3	24	junction_8	13.3041346956501	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAATAAAATATAGTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	136881341	136771836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839_136879903_136881231
ENSMUSG00000026398.15_2	chr1	-	3210	9	NNC	ENSMUSG00000026398.15	novel	4733	9	NA	NA	824	179	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_8	15.8646619882051	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAATATAGTGTTTAC	NA	False	NA	NA	False	AATAAA	-21	NA	136880544	136771834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839_136879903_136880319
ENSMUSG00000026398.15_3	chr1	-	4950	7	FSM	ENSMUSG00000026398.15	ENSMUST00000168126.7	3446	7	192	-1696	192	-9	multi-exon	FALSE	canonical	3	44	junction_6	7.84042232422605	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGTAACTTTTTAAATC	NA	False	NA	-23	True	AATAAA	-14	NA	136877108	136770317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459
ENSMUSG00000026398.15_5	chr1	-	3320	3	ISM	ENSMUSG00000026398.15	ENSMUST00000168126.7	3446	7	58842	-1699	49863	-6	3prime_fragment	FALSE	canonical	3	51	junction_2	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAACTTTTTAAATCCTT	NA	False	NA	-20	True	AATAAA	-17	NA	136818458	136770314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_136773449_136810001_136810150_136818420
ENSMUSG00000026398.15_6	chr1	-	4697	8	ISM	ENSMUSG00000026398.15	ENSMUST00000192929.6	1756	9	1271	-2883	1271	-9	3prime_fragment	FALSE	canonical	3	37	junction_7	9.80420567815628	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGTAACTTTTTAAATC	NA	False	NA	-23	True	AATAAA	-14	NA	136880097	136770317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839
ENSMUSG00000026398.15_9	chr1	-	2364	4	ISM	ENSMUSG00000026398.15	ENSMUST00000168126.7	3446	7	8672	-179	-307	179	3prime_fragment	FALSE	canonical	3	51	junction_2	4.96655480858378	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAATATAGTGTTTAC	NA	False	NA	NA	False	AATAAA	-21	NA	136868628	136771834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146
ENSMUSG00000026399.13_1	chr1	-	2639	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-17	-9	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	25.6855990780826	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAATACACTGTTGTCT	NA	False	NA	NA	False	TTTAAA	-36	NA	130390205	130366772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_130368117_130375355_130375377_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
ENSMUSG00000026399.13_11	chr1	-	3334	8	NIC	ENSMUSG00000026399.13	novel	3133	8	NA	NA	-24	-15	intron_retention	FALSE	canonical	3	19	junction_7	19.4401226165613	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCTAATGCAAAAACATCT	NA	False	NA	NA	False	AATAAA	-9	NA	130390212	130374412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_130375377_130376064_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
ENSMUSG00000026399.13_12	chr1	-	3092	8	FSM	ENSMUSG00000026399.13	ENSMUST00000140725.8	3133	8	31	10	31	-10	multi-exon	FALSE	canonical	3	50	junction_7	10.5926428068095	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCAAAAACATCTCCTGA	NA	False	NA	NA	False	AATAAA	-14	NA	130390437	130374407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_130375377_130376064_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
ENSMUSG00000026399.13_14	chr1	-	2110	9	ISM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	13	7649	0	-15	5prime_fragment	FALSE	canonical	3	38	junction_2	13.7244080018047	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCTAATGCAAAAACATCT	NA	False	NA	NA	False	AATAAA	-9	NA	130390468	130374412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
ENSMUSG00000026399.13_15	chr1	-	2250	8	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-24	-10	combination_of_known_splicesites	FALSE	canonical	2	9	junction_1	27.0630405399191	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCAAAAACATCTCCTGA	NA	False	NA	NA	False	AATAAA	-14	NA	130390212	130374407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_130375377_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
ENSMUSG00000026399.13_19	chr1	-	2300	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-3	-20	combination_of_known_junctions	FALSE	canonical	3	19	junction_8	19.8793234291311	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCTAAGCTAATGCAAAAA	NA	False	NA	NA	False	AATAAA	-4	NA	130390191	130374417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
ENSMUSG00000026399.13_2	chr1	-	2710	10	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-19	-21	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	18.9912260443255	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAGAAATAAATAAAT	NA	False	NA	NA	False	TTTAAA	-24	NA	130390207	130366784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
ENSMUSG00000026399.13_22	chr1	-	3735	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-20	-5	intron_retention	FALSE	canonical	3	19	junction_8	18.3196445107431	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACACTGTTGTCTCCTG	NA	False	NA	NA	False	TTTAAA	-40	NA	130390208	130366768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_130368117_130375355_130375377_130376064_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
ENSMUSG00000026399.13_4	chr1	-	3470	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	34	-24	intron_retention	FALSE	canonical	3	50	junction_8	9.9373034571759	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAGAAATAAATA	NA	False	NA	NA	False	TTTAAA	-21	NA	130390434	130366787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_130368117_130375355_130375377_130376064_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
ENSMUSG00000026399.13_6	chr1	-	2476	10	FSM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	41	16	28	-16	multi-exon	FALSE	canonical	3	38	junction_3	13.0705587551887	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGAAATAAATAAATACACT	NA	False	NA	NA	False	TTTAAA	-29	NA	130390440	130366779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
ENSMUSG00000026399.13_7	chr1	-	2404	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	11	-24	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	21.5982493503525	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAGAAATAAATA	NA	False	NA	NA	False	TTTAAA	-21	NA	130390457	130366787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_130368117_130375355_130375377_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
ENSMUSG00000026404.13_0	chr1	+	2122	8	FSM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	35	9	35	-9	multi-exon	FALSE	canonical	3	59	junction_1	8.75750407085377	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCAATATCGTTATTTAT	NA	False	NA	1	True	AATAAA	-7	NA	136343043	136367887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136362243_136362373_136367490
ENSMUSG00000026404.13_1	chr1	+	1895	2	FSM	ENSMUSG00000026404.13	ENSMUST00000129218.7	1364	2	29	-560	29	560	multi-exon	FALSE	canonical	3	59	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTCACAAATACTGAATG	NA	False	NA	NA	False	AATAAA	-15	NA	136343037	136346090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_136343162_136344319
ENSMUSG00000026404.13_12	chr1	+	484	2	ISM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	19282	4	2151	-4	3prime_fragment	FALSE	canonical	3	87	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCGTTATTTATTTCAG	NA	False	NA	6	True	AATAAA	-12	NA	136362290	136367892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_136362373_136367490
ENSMUSG00000026404.13_2	chr1	+	2036	7	NIC	ENSMUSG00000026404.13	novel	2166	8	NA	NA	29	-11	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	25.5631027502966	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGCAATATCGTTATTT	NA	False	NA	-1	True	AATAAA	-5	NA	136343037	136367885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_136343162_136344319_136345135_136347147_136347316_136360049_136360302_136361450_136361604_136362243_136362373_136367490
ENSMUSG00000026404.13_3	chr1	+	1988	7	NIC	ENSMUSG00000026404.13	novel	2166	8	NA	NA	40	-9	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	23.4004985701872	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCAATATCGTTATTTAT	NA	False	NA	1	True	AATAAA	-7	NA	136343048	136367887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136367490
ENSMUSG00000026404.13_4	chr1	+	1918	6	NIC	ENSMUSG00000026404.13	novel	2166	8	NA	NA	25	-4	combination_of_known_splicesites	FALSE	canonical	2	4	junction_5	30.1396748489429	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCGTTATTTATTTCAG	NA	False	NA	6	True	AATAAA	-12	NA	136343033	136367892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_136343162_136344319_136345135_136347147_136347316_136360049_136360302_136361450_136361604_136367490
ENSMUSG00000026404.13_6	chr1	+	1758	7	ISM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	1559	7	1559	-7	3prime_fragment	FALSE	canonical	3	61	junction_5	8.55699843532896	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATATCGTTATTTATTT	NA	False	NA	3	True	AATAAA	-9	NA	136344567	136367889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136362243_136362373_136367490
ENSMUSG00000026409.15_2	chr1	-	3609	16	NIC	ENSMUSG00000026409.15	novel	4505	16	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	6.66199836552233	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGTACAATGAAATTTTCA	3921	False	NA	NA	False	AATAAA	-21	NA	130643549	130616924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_130618886_130625642_130625823_130626415_130626481_130626924_130626988_130627717_130627848_130628506_130628612_130629441_130629589_130629967_130630176_130633113_130633239_130634162_130634220_130634579_130634655_130634788_130634856_130635245_130635343_130635812_130635939_130642202_130642314_130643457
ENSMUSG00000026409.15_23	chr1	-	7295	15	FSM	ENSMUSG00000026409.15	ENSMUST00000169659.8	2849	15	-36	-4410	0	-1246	multi-exon	FALSE	canonical	3	18	junction_5	4.50679758695639	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTATTGGAAGGCTTCTG	3919	False	NA	-7	True	AATAAA	-17	NA	130643551	130619997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_130625823_130626415_130626481_130626924_130626988_130627717_130627848_130628506_130628612_130629441_130629589_130629967_130630176_130633113_130633239_130634162_130634220_130634579_130634655_130634788_130634856_130635245_130635343_130635812_130635939_130642202_130642314_130643457
ENSMUSG00000026409.15_26	chr1	-	1882	1	FSM	ENSMUSG00000026409.15	ENSMUST00000187522.2	3057	1	1175	0	1175	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGTACAATGAAATTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	130618807	130616925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_130616900_130618800
ENSMUSG00000026409.15_3	chr1	-	3441	15	NIC	ENSMUSG00000026409.15	novel	4505	16	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	7.01492577818678	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGTACAATGAAATTTTC	3908	False	NA	NA	False	AATAAA	-20	NA	130643562	130616925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_130618886_130626415_130626481_130626924_130626988_130627717_130627848_130628506_130628612_130629441_130629589_130629967_130630176_130633113_130633239_130634162_130634220_130634579_130634655_130634788_130634856_130635245_130635343_130635812_130635939_130642202_130642314_130643457
ENSMUSG00000026411.18_0	chr1	+	1424	6	FSM	ENSMUSG00000026411.18	ENSMUST00000063719.15	1806	6	66	316	-29	246	multi-exon	FALSE	canonical	3	317	junction_1	45.0759359303831	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGTTGCAGATCTCAAGG	NA	False	NA	20	True	ATTAAA	-15	NA	135945770	135962764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_135945801_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
ENSMUSG00000026411.18_10	chr1	+	1395	5	ISM	ENSMUSG00000026411.18	ENSMUST00000063719.15	1806	6	536	318	441	244	3prime_fragment	FALSE	canonical	3	407	junction_3	14.0066948278314	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAGTTGCAGATCTCAA	NA	False	NA	18	True	ATTAAA	-13	NA	135946240	135962762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
ENSMUSG00000026411.18_6	chr1	+	1576	6	FSM	ENSMUSG00000026411.18	ENSMUST00000117950.2	847	6	5	-734	5	246	multi-exon	FALSE	canonical	2	15	junction_1	164.577519728546	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGTTGCAGATCTCAAGG	NA	False	NA	20	True	ATTAAA	-15	NA	135945804	135962764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_135945987_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
ENSMUSG00000026414.14_2	chr1	+	1268	13	NIC	ENSMUSG00000026414.14	novel	1094	14	NA	NA	-7	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_1	6.17960354715414	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATGGAATAGTGTTTCT	610	False	NA	1	True	AATAAA	-16	NA	135768429	135779998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_135768651_135771511_135771553_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087_135777199_135778448_135778559_135779089_135779181_135779433_135779475_135779764
ENSMUSG00000026418.17_2	chr1	+	1008	7	NIC	ENSMUSG00000026418.17	novel	1038	9	NA	NA	-2539	-26	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	34.6862925215263	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATCCAG	1032	False	NA	17	True	NA	NA	NA	135730255	135738701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_135730362_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUSG00000026418.17_5	chr1	+	922	5	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	5604	26	380	-26	3prime_fragment	FALSE	canonical	3	46	junction_1	20.1912728672563	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATCCAG	3951	False	NA	17	True	NA	NA	NA	135733174	135738701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUSG00000026418.17_7	chr1	+	804	4	ISM	ENSMUSG00000026418.17	ENSMUST00000129217.2	721	5	318	3	318	-3	3prime_fragment	FALSE	canonical	3	46	junction_1	22.4845626053867	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATCAGTGGTCCTGGA	3889	False	NA	NA	False	AGTAAA	-13	NA	135733112	135737644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_135733369_135735258_135735349_135736370_135736548_135737363
ENSMUSG00000026418.17_9	chr1	+	722	4	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	7694	26	2470	-26	3prime_fragment	FALSE	canonical	3	71	junction_1	12.2565175405668	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATCCAG	6041	False	NA	17	True	NA	NA	NA	135735264	135738701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUSG00000026421.15_14	chr1	+	1694	5	ISM	ENSMUSG00000026421.15	ENSMUST00000027677.8	1823	6	10249	5	10249	-5	3prime_fragment	FALSE	canonical	3	436	junction_2	26.9478663348325	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAACTCTGCTTTCCTGTC	NA	False	NA	19	True	AATAAA	-12	NA	135667133	135679965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
ENSMUSG00000026421.15_18	chr1	+	656	1	ISM	ENSMUSG00000026421.15	ENSMUST00000097561.9	1828	6	31511	5	22425	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAACTCTGCTTTCCTGTC	5581	False	NA	19	True	AATAAA	-12	NA	135679309	135679965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_135679300_135680000
ENSMUSG00000026421.15_5	chr1	+	1741	6	FSM	ENSMUSG00000026421.15	ENSMUST00000027677.8	1823	6	77	5	77	-5	multi-exon	FALSE	canonical	3	392	junction_1	35.0884596413123	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAACTCTGCTTTCCTGTC	NA	False	NA	19	True	AATAAA	-12	NA	135656961	135679965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_135657013_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
ENSMUSG00000026425.16_0	chr1	-	2592	1	ISM	ENSMUSG00000026425.16	ENSMUST00000097588.9	8026	23	238263	1242	7296	-1242	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCGCTGTACGTCACCTCC	NA	False	NA	-9	True	AATAAA	-17	NA	131216822	131214230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_131214200_131216800
ENSMUSG00000026425.16_31	chr1	-	3528	22	FSM	ENSMUSG00000026425.16	ENSMUST00000186543.7	3533	22	2	3	2	0	multi-exon	FALSE	canonical	3	29	junction_1	23.367225143015	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGAGGTTGCCAGATCTC	NA	False	NA	-3	True	AATAAA	-23	NA	131455083	131222958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_131223278_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
ENSMUSG00000026425.16_33	chr1	-	4287	21	ISM	ENSMUSG00000026425.16	ENSMUST00000097588.9	8026	23	23	9970	23	0	5prime_fragment	FALSE	canonical	3	115	junction_11	8.98943824718764	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGAGGTTGCCAGATCTC	NA	False	NA	-3	True	AATAAA	-23	NA	131455062	131222958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
ENSMUSG00000026425.16_5	chr1	-	6767	23	FSM	ENSMUSG00000026425.16	ENSMUST00000097588.9	8026	23	16	1243	16	-1243	multi-exon	TRUE	canonical	3	89	junction_2	12.3013135091171	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCGCTGTACGTCACCTC	NA	False	NA	-10	True	AATAAA	-16	NA	131455069	131214231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_131217479_131220258_131220584_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
ENSMUSG00000026425.16_9	chr1	-	6330	22	ISM	ENSMUSG00000026425.16	ENSMUST00000097588.9	8026	23	2087	1248	2087	-1248	3prime_fragment	FALSE	canonical	3	89	junction_2	12.5103132058289	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTTGCCGCTGTACGTC	NA	False	NA	-15	True	AATAAA	-11	NA	131452998	131214236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_131217479_131220258_131220584_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675
ENSMUSG00000026426.11_1	chr1	+	1720	7	FSM	ENSMUSG00000026426.11	ENSMUST00000027684.11	1713	7	-9	2	-9	-2	multi-exon	FALSE	canonical	3	419	junction_3	43.3720980457354	479	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGGTGTGTATGGTGCTG	NA	False	NA	13	True	AATAAA	-17	NA	135074552	135084005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_135074839_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
ENSMUSG00000026427.17_0	chr1	+	1958	15	FSM	ENSMUSG00000026427.17	ENSMUST00000068805.14	2009	15	44	7	44	-7	multi-exon	FALSE	canonical	3	546	junction_5	43.4650340351123	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAAGCTTTTATTTCTA	NA	False	NA	34	True	AATAAA	-15	NA	131080961	131101208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
ENSMUSG00000026427.17_3	chr1	+	2196	14	ISM	ENSMUSG00000026427.17	ENSMUST00000112446.9	2153	15	34	732	34	-3	5prime_fragment	FALSE	canonical	3	546	junction_5	45.0821734931215	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGGTGTTTTGCTTGCA	NA	False	NA	22	True	ATTAAA	-15	NA	131080951	131099244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673
ENSMUSG00000026429.10_0	chr1	+	923	7	NNC	ENSMUSG00000026429.10	novel	1116	7	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	canonical	3	165	junction_1	233.142779333943	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGTGTGTTTATATGAAA	NA	False	NA	13	True	AATAAA	-15	NA	134890316	134901898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_134890348_134895464_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
ENSMUSG00000026429.10_2	chr1	+	1079	7	FSM	ENSMUSG00000026429.10	ENSMUST00000027687.8	1116	7	35	2	9	1	multi-exon	FALSE	canonical	3	373	junction_1	158.492902049272	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGTGTGTTTATATGAAA	NA	False	NA	13	True	AATAAA	-15	NA	134890337	134901898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_134890525_134895464_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
ENSMUSG00000026429.10_21	chr1	+	893	6	ISM	ENSMUSG00000026429.10	ENSMUST00000027687.8	1116	7	5161	2	-3553	1	3prime_fragment	FALSE	canonical	3	687	junction_5	56.6568618968612	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGTGTGTTTATATGAAA	NA	False	NA	13	True	AATAAA	-15	NA	134895463	134901898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
ENSMUSG00000026433.14_0	chr1	+	1279	5	FSM	ENSMUSG00000026433.14	ENSMUST00000112386.8	1202	5	68	-145	52	-3	multi-exon	FALSE	canonical	3	82	junction_1	6.13901457890434	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTGTGGGTTGTGATGCT	NA	False	NA	12	True	ATTAAA	-14	NA	131795029	131800622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
ENSMUSG00000026433.14_1	chr1	+	1196	6	FSM	ENSMUSG00000026433.14	ENSMUST00000027693.8	1226	6	26	4	26	-4	multi-exon	FALSE	canonical	3	23	junction_1	27.6506781110337	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGTGGGTTGTGATGC	NA	False	NA	11	True	ATTAAA	-13	NA	131795003	131800621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_131795149_131795256_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
ENSMUSG00000026434.13_2	chr1	+	2683	7	FSM	ENSMUSG00000026434.13	ENSMUST00000062264.8	5998	7	-39	3354	-17	288	multi-exon	FALSE	canonical	3	1163	junction_5	186.902306626275	1333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCACCTAGTAGCAGAGA	9265	False	NA	NA	False	TTTAAA	-43	NA	131838254	131860705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857350_131857501_131858771
ENSMUSG00000026434.13_3	chr1	+	2672	7	FSM	ENSMUSG00000026434.13	ENSMUST00000189946.7	2375	7	-17	-280	-17	280	multi-exon	FALSE	canonical	3	331	junction_5	461.648284832608	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAATAAAGCACCTAGT	9265	False	NA	NA	False	TTTAAA	-35	NA	131838254	131860697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857353_131857501_131858771
ENSMUSG00000026434.13_39	chr1	+	3400	1	ISM	ENSMUSG00000026434.13	ENSMUST00000062264.8	5998	7	22360	6	3753	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	442	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGATGTGTGCTTCGT	NA	False	NA	21	True	TATAAA	-12	NA	131860653	131864053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_131860700_131864100
ENSMUSG00000026435.16_1	chr1	+	3200	5	FSM	ENSMUSG00000026435.16	ENSMUST00000177943.8	3212	5	6	6	6	-1	multi-exon	FALSE	canonical	3	24	junction_4	4.65698400254929	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATATGTGTTTGTCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	131890710	131910701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_131890791_131904455_131904851_131905150_131905937_131906485_131906752_131909028
ENSMUSG00000026435.16_12	chr1	+	1394	1	ISM	ENSMUSG00000026435.16	ENSMUST00000177943.8	3212	5	18603	6	2606	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATATGTGTTTGTCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	131909307	131910701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_131909300_131910700
ENSMUSG00000026435.16_4	chr1	+	3180	5	NIC	ENSMUSG00000026435.16	novel	3212	5	NA	NA	-16	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	12.3895116933639	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATATGTGTTTGTCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	131890688	131910701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_131890791_131904455_131904851_131905192_131905937_131906485_131906752_131909028
ENSMUSG00000026435.16_5	chr1	+	2956	4	NIC	ENSMUSG00000026435.16	novel	3212	5	NA	NA	-16	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	16.2138486760204	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATATGTGTTTGTCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	131890688	131910701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_131890791_131904455_131904851_131905150_131905937_131909028
ENSMUSG00000026435.16_7	chr1	+	3519	4	NIC	ENSMUSG00000026435.16	novel	3212	5	NA	NA	-8	-1	intron_retention	FALSE	canonical	3	24	junction_3	2.94392028877595	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGTGTTTGTCTTTTCTG	NA	False	NA	NA	False	ATTAAA	-22	NA	131890696	131910706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_131890791_131904455_131905937_131906485_131906752_131909028
ENSMUSG00000026435.16_9	chr1	+	2516	3	ISM	ENSMUSG00000026435.16	ENSMUST00000027695.8	3340	5	7013	1	903	-1	3prime_fragment	FALSE	canonical	3	24	junction_2	2.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATATGTGTTTGTCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	131905359	131910701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_131905937_131906485_131906752_131909028
ENSMUSG00000026436.16_1	chr1	+	4422	5	FSM	ENSMUSG00000026436.16	ENSMUST00000086556.12	4433	5	4	7	4	-7	multi-exon	FALSE	canonical	3	11	junction_4	2.9474565306379	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTAAGTAACCTTTCAGT	47	False	NA	NA	False	NA	NA	NA	131935348	131954179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_131935679_131942120_131942337_131945330_131946201_131947087_131947205_131951290
ENSMUSG00000026437.12_0	chr1	-	2930	16	FSM	ENSMUSG00000026437.12	ENSMUST00000027697.12	4355	16	1	1424	1	925	multi-exon	FALSE	canonical	3	137	junction_4	13.6323145503616	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGCAGTGAGCAGTC	598	False	NA	-9	True	AATATA	-16	NA	132067421	132041398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_132042709_132043202_132043281_132043599_132043691_132044184_132044228_132044333_132044440_132044621_132044720_132045219_132045341_132045487_132045612_132046258_132046322_132046587_132046683_132046837_132046953_132047705_132047763_132049185_132049312_132049774_132049855_132050049_132050199_132067147
ENSMUSG00000026437.12_1	chr1	-	2885	15	NIC	ENSMUSG00000026437.12	novel	4355	16	NA	NA	3	925	intron_retention	FALSE	canonical	2	6	junction_3	40.998257802706	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGCAGTGAGCAGTC	600	False	NA	-9	True	AATATA	-16	NA	132067419	132041398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_132042709_132043202_132043281_132043599_132043691_132044333_132044440_132044621_132044720_132045219_132045341_132045487_132045612_132046258_132046322_132046587_132046683_132046837_132046953_132047705_132047763_132049185_132049312_132049774_132049855_132050049_132050199_132067147
ENSMUSG00000026439.15_16	chr1	+	3483	14	NIC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	277	junction_4	39.7596328248497	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCACAAGTATACATGC	NA	False	NA	5	True	AATAAA	-14	NA	132405129	132433393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
ENSMUSG00000026439.15_17	chr1	+	3598	14	FSM	ENSMUSG00000026439.15	ENSMUST00000190997.7	2856	14	24	-766	-15	0	multi-exon	FALSE	canonical	3	60	junction_13	83.2346081867393	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCACAAGTATACATGC	NA	False	NA	5	True	AATAAA	-14	NA	132405128	132433393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
ENSMUSG00000026439.15_35	chr1	+	3349	14	NIC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	94.1666657939292	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCACAAGTATACATGC	NA	False	NA	5	True	AATAAA	-14	NA	132405146	132433393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_132405266_132411789_132411816_132412483_132412540_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
ENSMUSG00000026439.15_70	chr1	+	1824	1	FSM	ENSMUSG00000026439.15	ENSMUST00000187834.2	1923	1	100	-1	100	1	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCACAAGTATACATGCT	NA	False	NA	6	True	AATAAA	-15	NA	132431570	132433394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_132431600_132433400
ENSMUSG00000026442.15_0	chr1	-	3625	1	ISM	ENSMUSG00000026442.15	ENSMUST00000094569.11	9739	30	173442	1	18825	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGCCATGATTTGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	132496053	132492428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_132492400_132496100
ENSMUSG00000026442.15_11	chr1	-	3164	22	NIC	ENSMUSG00000026442.15	novel	3903	28	NA	NA	0	-11	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	7.76117437404927	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAATGTATCATTAGCCA	NA	False	NA	NA	False	NA	NA	NA	132669501	132527583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_132527953_132529708_132529932_132531535_132531607_132532778_132532977_132533221_132533324_132534740_132534786_132536120_132536246_132537494_132537643_132538048_132538216_132538512_132538625_132539267_132539412_132547126_132547259_132548662_132548848_132549249_132549362_132555609_132555661_132559422_132559594_132561905_132562029_132562361_132562559_132564723_132564830_132570415_132570597_132593216_132593326_132669408
ENSMUSG00000026442.15_14	chr1	-	3754	19	NIC	ENSMUSG00000026442.15	novel	9739	30	NA	NA	3	-943	combination_of_known_junctions	FALSE	canonical	2	5	junction_18	5.69600249687835	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGCACTGCAGTGTGGGT	NA	False	NA	NA	False	AGTAAA	-12	NA	132669513	132530314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_132531607_132532778_132532977_132533221_132533324_132534740_132534786_132536120_132536246_132537494_132537643_132538048_132538216_132538512_132538625_132539267_132539412_132547126_132547259_132548662_132548848_132549249_132549362_132559422_132559594_132561905_132562029_132562361_132562559_132564723_132564830_132570415_132570597_132593216_132593326_132669408
ENSMUSG00000026442.15_4	chr1	-	4658	25	NIC	ENSMUSG00000026442.15	novel	9739	30	NA	NA	-4	-7	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	7.54143646057493	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGAGCCTATCTGTCCT	NA	False	NA	-8	True	NA	NA	NA	132669520	132496993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_132498390_132501507_132501578_132504023_132504156_132523221_132523396_132524263_132524387_132529708_132529932_132531535_132531607_132532778_132532977_132533221_132533324_132534740_132534786_132536120_132536246_132537494_132537643_132538048_132538216_132538512_132538625_132539267_132539412_132547126_132547259_132548662_132548848_132549249_132549362_132559422_132559594_132561905_132562029_132562361_132562559_132564723_132564830_132570415_132570597_132593216_132593326_132669408
ENSMUSG00000026442.15_7	chr1	-	3132	21	NIC	ENSMUSG00000026442.15	novel	4927	32	NA	NA	-4	-11	combination_of_known_junctions	FALSE	canonical	2	5	junction_20	5.90148286450109	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAATGTATCATTAGCCA	NA	False	NA	NA	False	NA	NA	NA	132669520	132527583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_132527953_132529708_132529932_132531535_132531607_132532778_132532977_132533221_132533324_132534740_132534786_132536120_132536246_132537494_132537643_132538048_132538216_132538512_132538625_132539267_132539412_132547126_132547259_132548662_132548848_132549249_132549362_132559422_132559594_132561905_132562029_132562361_132562559_132564723_132564830_132570415_132570597_132593216_132593326_132669408
ENSMUSG00000026443.4_0	chr1	+	3319	2	FSM	ENSMUSG00000026443.4	ENSMUST00000027706.4	3428	2	88	21	6	-21	multi-exon	FALSE	canonical	3	16	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACAGTGGGGAGAAGAT	NA	False	NA	1	True	AATAAA	-14	NA	132808098	132867722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_132808414_132864718
ENSMUSG00000026443.4_4	chr1	+	1893	1	ISM	ENSMUSG00000026443.4	ENSMUST00000027706.4	3428	2	57814	26	57732	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCAATAACAGTGGGGAG	7	False	NA	-4	True	AATAAA	-9	NA	132865824	132867717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_132865800_132867700
ENSMUSG00000026447.18_0	chr1	+	7917	33	FSM	ENSMUSG00000026447.18	ENSMUST00000077730.7	7928	33	6	5	6	-5	multi-exon	FALSE	canonical	1	8	junction_4	3.18795952569979	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACAAAGCTATCATTAT	NA	False	NA	NA	False	AATAAA	-10	NA	132973755	133036420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_132974162_132993949_132994968_132998055_132998157_132998911_132999067_132999339_132999461_133002248_133002361_133002516_133002597_133003548_133003613_133005063_133005211_133005956_133005991_133007381_133007578_133008698_133008822_133012555_133012724_133013238_133013351_133014674_133014818_133015925_133016115_133017703_133017798_133017908_133018004_133018418_133018600_133019298_133019407_133020009_133020103_133021393_133021524_133022435_133022573_133026368_133026539_133026890_133027048_133027342_133027453_133028462_133028665_133029067_133029193_133030017_133030136_133031090_133031173_133031538_133031646_133032724_133032854_133033710
ENSMUSG00000026447.18_17	chr1	+	3584	23	ISM	ENSMUSG00000026447.18	ENSMUST00000077730.7	7928	33	33677	2055	11110	-2055	3prime_fragment	FALSE	canonical	1	9	junction_13	3.15049517293881	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGGTTTTGTTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	133007426	133034370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_133007578_133008698_133008822_133012555_133012724_133013238_133013351_133014674_133014818_133015925_133016115_133017703_133017798_133017908_133018004_133018418_133018600_133019298_133019407_133020009_133020103_133021393_133021524_133022435_133022573_133026368_133026539_133026890_133027048_133027342_133027453_133028462_133028665_133029067_133029193_133030017_133030136_133031090_133031173_133031538_133031646_133032724_133032854_133033710
ENSMUSG00000026447.18_22	chr1	+	3586	8	ISM	ENSMUSG00000026447.18	ENSMUST00000077730.7	7928	33	53592	3	31025	-3	3prime_fragment	FALSE	canonical	2	16	junction_1	1.8516401995451	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTATCATTATTA	6976	False	NA	NA	False	AATAAA	-12	NA	133027341	133036422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_133027453_133028462_133028665_133029067_133029193_133030017_133030136_133031090_133031173_133031538_133031646_133032724_133032854_133033710
ENSMUSG00000026447.18_25	chr1	+	2060	2	FSM	ENSMUSG00000026447.18	ENSMUST00000145153.8	2234	2	4	170	4	-170	multi-exon	FALSE	canonical	3	15	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGGCAGTAAGTGCGGT	NA	False	NA	NA	False	ATTAAA	-12	NA	132973753	132995601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_132974162_132993949
ENSMUSG00000026447.18_3	chr1	+	7324	32	ISM	ENSMUSG00000026447.18	ENSMUST00000077730.7	7928	33	20385	7	-2182	-7	3prime_fragment	FALSE	canonical	1	8	junction_3	3.23836265972805	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAAACAAAGCTATCATT	NA	False	NA	NA	False	AATAAA	-8	NA	132994134	133036418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_132994968_132998055_132998157_132998911_132999067_132999339_132999461_133002248_133002361_133002516_133002597_133003548_133003613_133005063_133005211_133005956_133005991_133007381_133007578_133008698_133008822_133012555_133012724_133013238_133013351_133014674_133014818_133015925_133016115_133017703_133017798_133017908_133018004_133018418_133018600_133019298_133019407_133020009_133020103_133021393_133021524_133022435_133022573_133026368_133026539_133026890_133027048_133027342_133027453_133028462_133028665_133029067_133029193_133030017_133030136_133031090_133031173_133031538_133031646_133032724_133032854_133033710
ENSMUSG00000026447.18_5	chr1	+	5323	21	ISM	ENSMUSG00000026447.18	ENSMUST00000077730.7	7928	33	38843	5	16276	-5	3prime_fragment	FALSE	canonical	2	9	junction_11	3.18237332819391	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACAAAGCTATCATTAT	NA	False	NA	NA	False	AATAAA	-10	NA	133012592	133036420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_133012724_133013238_133013351_133014674_133014818_133015925_133016115_133017703_133017798_133017908_133018004_133018418_133018600_133019298_133019407_133020009_133020103_133021393_133021524_133022435_133022573_133026368_133026539_133026890_133027048_133027342_133027453_133028462_133028665_133029067_133029193_133030017_133030136_133031090_133031173_133031538_133031646_133032724_133032854_133033710
ENSMUSG00000026447.18_9	chr1	+	2554	1	ISM	ENSMUSG00000026447.18	ENSMUST00000077730.7	7928	33	60119	3	37552	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTATCATTATTA	NA	False	NA	NA	False	AATAAA	-12	NA	133033868	133036422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_133033900_133036400
ENSMUSG00000026452.16_0	chr1	+	5083	1	ISM	ENSMUSG00000026452.16	ENSMUST00000121990.2	6879	9	38746	21	-531	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAAGAGCTGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	134675783	134680866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_134675800_134680900
ENSMUSG00000026455.15_0	chr1	+	3356	12	Fusion	ENSMUSG00000101061.2_ENSMUSG00000026455.15	novel	937	3	NA	NA	10	-5	multi-exon	TRUE	canonical	3	12	junction_1	47.209573199224	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGCTTTAAGAGAATTT	NA	False	NA	12	True	ATTAAA	-13	NA	134363375	134418606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr1_+_134363609_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
ENSMUSG00000026455.15_26	chr1	+	1999	5	ISM	ENSMUSG00000026455.15	ENSMUST00000116528.2	3277	12	30342	5	10617	-5	3prime_fragment	FALSE	canonical	3	174	junction_3	9.17537465175128	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGCTTTAAGAGAATTT	5527	False	NA	12	True	ATTAAA	-13	NA	134413634	134418606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
ENSMUSG00000026455.15_27	chr1	+	1984	4	ISM	ENSMUSG00000026455.15	ENSMUST00000116528.2	3277	12	31453	5	11728	-5	3prime_fragment	FALSE	canonical	3	174	junction_2	10.3708994574027	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGCTTTAAGAGAATTT	6638	False	NA	12	True	ATTAAA	-13	NA	134414745	134418606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_134414907_134415381_134415481_134416672_134416860_134417069
ENSMUSG00000026455.15_3	chr1	+	3250	12	FSM	ENSMUSG00000026455.15	ENSMUST00000027725.11	3408	12	8	150	8	-5	multi-exon	FALSE	canonical	3	104	junction_1	24.9889231659096	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGCTTTAAGAGAATTT	NA	False	NA	12	True	ATTAAA	-13	NA	134383276	134418606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_134383404_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
ENSMUSG00000026455.15_4	chr1	+	3288	12	FSM	ENSMUSG00000026455.15	ENSMUST00000116528.2	3277	12	-16	5	8	-5	multi-exon	FALSE	canonical	3	46	junction_1	38.3780670833987	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGCTTTAAGAGAATTT	NA	False	NA	12	True	ATTAAA	-13	NA	134383276	134418606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_134383404_134386165_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
ENSMUSG00000026456.19_1	chr1	+	1826	8	NIC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	8	-11	intron_retention	FALSE	canonical	3	337	junction_4	39.0227563122351	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATCTCAAGGAATCATT	8226	False	NA	28	True	AATAAA	-16	NA	134333773	134339463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
ENSMUSG00000026456.19_19	chr1	+	2505	8	ISM	ENSMUSG00000026456.19	ENSMUST00000154237.8	2420	9	218	11	4	-11	intron_retention	FALSE	canonical	3	35	junction_5	138.679192265267	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATCTCAAGGAATCATT	8189	False	NA	28	True	AATAAA	-16	NA	134333736	134339463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230
ENSMUSG00000026456.19_2	chr1	+	1605	9	FSM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	217	15	3	-11	multi-exon	TRUE	canonical	3	291	junction_1	53.3666562565053	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATCTCAAGGAATCATT	8188	False	NA	28	True	AATAAA	-16	NA	134333735	134339463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
ENSMUSG00000026456.19_4	chr1	+	2192	9	FSM	ENSMUSG00000026456.19	ENSMUST00000154237.8	2420	9	217	11	3	-11	multi-exon	FALSE	canonical	3	35	junction_5	130.869925880624	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATCTCAAGGAATCATT	8188	False	NA	28	True	AATAAA	-16	NA	134333735	134339463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230_134338331_134338644
ENSMUSG00000026456.19_50	chr1	+	718	1	ISM	ENSMUSG00000026456.19	ENSMUST00000154237.8	2420	9	5227	11	4695	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATCTCAAGGAATCATT	NA	False	NA	28	True	AATAAA	-16	NA	134338745	134339463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_134338700_134339500
ENSMUSG00000026456.19_8	chr1	+	1923	8	ISM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	213	15	-1	-11	intron_retention	TRUE	canonical	3	291	junction_1	56.9597064885811	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATCTCAAGGAATCATT	8184	False	NA	28	True	AATAAA	-16	NA	134333731	134339463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230
ENSMUSG00000026457.15_0	chr1	+	2051	8	FSM	ENSMUSG00000026457.15	ENSMUST00000027727.15	3123	8	54	1018	-24	-1015	multi-exon	FALSE	canonical	3	879	junction_4	75.4485904170407	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACGCTTGGCATTCAAAG	NA	False	NA	4	True	AATAAA	-12	NA	134343169	134360071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_134343324_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
ENSMUSG00000026457.15_15	chr1	+	2153	8	FSM	ENSMUSG00000026457.15	ENSMUST00000112237.2	3446	8	278	1015	170	-1015	multi-exon	FALSE	canonical	3	124	junction_1	322.905874956825	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACGCTTGGCATTCAAAG	NA	False	NA	4	True	AATAAA	-12	NA	134343471	134360071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_134343728_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
ENSMUSG00000026458.14_0	chr1	-	1676	1	ISM	ENSMUSG00000026458.14	ENSMUST00000168515.8	6067	29	34464	6	6344	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTACAAATGGTGTCAGT	9229	False	NA	-6	True	AATAAA	-18	NA	134226202	134224526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_134224500_134226200
ENSMUSG00000026458.14_15	chr1	-	4453	28	NNC	ENSMUSG00000026458.14	novel	5238	28	NA	NA	-11782	4	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_26	16.5805180934407	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTGCTTGGACTAATTG	NA	False	NA	-2	True	AATAAA	-17	NA	134272448	134226114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553_134254701_134254995_134255188_134255737_134255828_134256030_134256106_134256381_134256547_134256883_134256986_134260027_134260667_134272330
ENSMUSG00000026458.14_18	chr1	-	3387	21	NIC	ENSMUSG00000026458.14	novel	6067	29	NA	NA	293	0	intron_retention	FALSE	canonical	2	11	junction_1	12.4638477205075	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTCCTGCTTGGACTA	NA	False	NA	-6	True	AATAAA	-13	NA	134254711	134226118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_134226875_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553
ENSMUSG00000026458.14_21	chr1	-	3801	5	FSM	ENSMUSG00000026458.14	ENSMUST00000189862.7	2985	5	-2402	1586	-2364	6	multi-exon	FALSE	canonical	3	39	junction_3	17.4499283666151	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCTTGGACTAATTGGC	483	False	NA	0	True	AATAAA	-19	NA	134234948	134226112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024
ENSMUSG00000026458.14_4	chr1	-	3079	21	ISM	ENSMUSG00000026458.14	ENSMUST00000186730.7	4674	22	298	1592	298	5	3prime_fragment	FALSE	canonical	2	30	junction_19	10.0641691162261	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTTGGACTAATTGG	NA	False	NA	-1	True	AATAAA	-18	NA	134254706	134226113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553
ENSMUSG00000026458.14_5	chr1	-	4227	25	NIC	ENSMUSG00000026458.14	novel	5238	28	NA	NA	-1545	-246	combination_of_known_junctions	TRUE	canonical	2	13	junction_22	14.4076922934321	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTCCATTATTTTAA	NA	False	NA	NA	False	AAGAAA	-15	NA	134256549	134225484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553_134254701_134254995_134255188_134255737_134255828_134256030_134256106_134256381
ENSMUSG00000026463.18_0	chr1	-	2297	1	ISM	ENSMUSG00000026463.18	ENSMUST00000143567.8	11725	21	96063	3225	-3097	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATGTGCTATCGTCTGGG	NA	False	NA	-9	True	AATAAA	-16	NA	133632716	133630419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133630400_133632700
ENSMUSG00000026463.18_10	chr1	-	4534	3	ISM	ENSMUSG00000026463.18	ENSMUST00000165602.9	8101	20	37197	12	1379	-12	3prime_fragment	FALSE	canonical	3	25	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTAATGTGCTATCGTC	4592	False	NA	-13	True	AATAAA	-12	NA	133644288	133630423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133634735_133642791_133642969_133644242
ENSMUSG00000026463.18_11	chr1	-	6714	16	ISM	ENSMUSG00000026463.18	ENSMUST00000165602.9	8101	20	15720	55	15254	-55	3prime_fragment	FALSE	canonical	3	15	junction_4	3.42928563989645	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGAAACCAATGCCATGC	4689	False	NA	-10	True	AATAAA	-15	NA	133665765	133630466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133634735_133642791_133642969_133644242_133644351_133645525_133645738_133646437_133646652_133647061_133647254_133654194_133654302_133655460_133655549_133656434_133656615_133657454_133657687_133658106_133658349_133659400_133659644_133659963_133660179_133662785_133662948_133664353_133664390_133665727
ENSMUSG00000026463.18_12	chr1	-	7760	19	NIC	ENSMUSG00000026463.18	novel	8101	20	NA	NA	184	-55	combination_of_known_splicesites	FALSE	canonical	3	8	junction_14	4.97555754056831	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGAAACCAATGCCATGC	8872	False	NA	-10	True	AATAAA	-15	NA	133681235	133630466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133634735_133642791_133642969_133644242_133644351_133645525_133645738_133646437_133646652_133647061_133647254_133654194_133654302_133655460_133655549_133656434_133656615_133657454_133657687_133658106_133658349_133659400_133659644_133659963_133660179_133662785_133662948_133665727_133665857_133666275_133666402_133666900_133667159_133667651_133667850_133680826
ENSMUSG00000026463.18_19	chr1	-	8027	21	FSM	ENSMUSG00000026463.18	ENSMUST00000048953.14	8292	21	258	7	192	-7	multi-exon	FALSE	canonical	3	6	junction_1	5.43943930934062	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGCTATCGTCTGGGT	8880	False	NA	-8	True	AATAAA	-17	NA	133681227	133630418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_133634735_133639369_133639561_133642791_133642969_133644242_133644351_133645525_133645738_133646437_133646652_133647061_133647254_133654194_133654302_133655460_133655549_133656434_133656615_133657454_133657687_133658106_133658349_133659400_133659644_133659963_133660179_133662785_133662948_133664353_133664390_133665727_133665857_133666275_133666402_133666900_133667159_133667651_133667850_133680826
ENSMUSG00000026463.18_2	chr1	-	8472	21	FSM	ENSMUSG00000026463.18	ENSMUST00000143567.8	11725	21	24	3229	19	-12	multi-exon	FALSE	canonical	2	6	junction_20	5.11346262331114	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTAATGTGCTATCGTC	9233	False	NA	-13	True	AATAAA	-12	NA	133728755	133630423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_133634735_133642791_133642969_133644242_133644351_133645525_133645738_133646437_133646652_133647061_133647254_133654194_133654302_133655460_133655549_133656434_133656615_133657454_133657687_133658106_133658349_133659400_133659644_133659963_133660179_133662785_133662948_133664353_133664390_133665727_133665857_133666275_133666402_133666900_133667159_133667651_133667850_133680826_133681488_133728374
ENSMUSG00000026463.18_5	chr1	-	8196	20	NIC	ENSMUSG00000026463.18	novel	11725	21	NA	NA	265	-6	combination_of_known_splicesites	FALSE	canonical	2	6	junction_19	5.67835956179418	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGCTATCGTCTGGGTC	9479	False	NA	-7	True	AATAAA	-18	NA	133728509	133630417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133634735_133642791_133642969_133644242_133644351_133645525_133645738_133646437_133646652_133647061_133647254_133654194_133654302_133655460_133655549_133656434_133656615_133657454_133657687_133658106_133658349_133659400_133659644_133659963_133660179_133662785_133662948_133665727_133665857_133666275_133666402_133666900_133667159_133667651_133667850_133680826_133681488_133728374
ENSMUSG00000026463.18_6	chr1	-	7793	20	FSM	ENSMUSG00000026463.18	ENSMUST00000165602.9	8101	20	253	55	187	-55	multi-exon	FALSE	canonical	3	10	junction_19	4.16554924998092	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGAAACCAATGCCATGC	8875	False	NA	-10	True	AATAAA	-15	NA	133681232	133630466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_133634735_133642791_133642969_133644242_133644351_133645525_133645738_133646437_133646652_133647061_133647254_133654194_133654302_133655460_133655549_133656434_133656615_133657454_133657687_133658106_133658349_133659400_133659644_133659963_133660179_133662785_133662948_133664353_133664390_133665727_133665857_133666275_133666402_133666900_133667159_133667651_133667850_133680826
ENSMUSG00000026463.18_8	chr1	-	4385	2	ISM	ENSMUSG00000026463.18	ENSMUST00000165602.9	8101	20	38597	35	2779	-35	3prime_fragment	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTGAGAATAAAAACCCATG	5992	False	NA	10	True	AATAAA	-35	NA	133642888	133630446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133634735_133642791
ENSMUSG00000026463.18_9	chr1	-	5676	10	ISM	ENSMUSG00000026463.18	ENSMUST00000165602.9	8101	20	23948	8	-11870	-8	3prime_fragment	FALSE	canonical	3	15	junction_4	3.79408246199197	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATGTGCTATCGTCTGGG	3856	False	NA	-9	True	AATAAA	-16	NA	133657537	133630419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133634735_133642791_133642969_133644242_133644351_133645525_133645738_133646437_133646652_133647061_133647254_133654194_133654302_133655460_133655549_133656434_133656615_133657454
ENSMUSG00000026466.17_0	chr1	-	1598	10	FSM	ENSMUSG00000026466.17	ENSMUST00000097527.10	4234	10	467	2169	90	-2	multi-exon	FALSE	canonical	3	47	junction_4	20.1935083078146	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGCCTAATTATCTGTG	NA	False	NA	NA	False	AGTAAA	-34	NA	155911706	155882528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
ENSMUSG00000026466.17_1	chr1	-	1652	11	FSM	ENSMUSG00000026466.17	ENSMUST00000136331.8	2723	11	521	550	91	-3	multi-exon	FALSE	canonical	2	47	junction_4	24.0865107477194	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCAGCCTAATTATCTGT	NA	False	NA	NA	False	AGTAAA	-33	NA	155911705	155882529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155895713_155895770_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
ENSMUSG00000026466.17_2	chr1	-	2847	1	ISM	ENSMUSG00000026466.17	ENSMUST00000169241.8	3716	10	27262	110	11064	-95	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATCTTTCAGAAAAAAAACA	NA	False	NA	NA	False	AATAAA	-8	NA	155883301	155880454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_155880500_155883300
ENSMUSG00000026469.15_0	chr1	-	2883	1	ISM	ENSMUSG00000026469.15	ENSMUST00000027741.12	7492	15	138743	3	13441	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTCTGGCCTTTTTCAT	4984	False	NA	-3	True	AAGAAA	-17	NA	155154332	155151449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_155151400_155154300
ENSMUSG00000026469.15_1	chr1	-	4497	15	FSM	ENSMUSG00000026469.15	ENSMUST00000027741.12	7492	15	-82	3077	-4	204	multi-exon	FALSE	canonical	2	7	junction_5	3.69569523436472	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCCTGTGAATTGTCAG	NA	False	NA	-2	True	AATAAA	-21	NA	155293157	155154523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_155156817_155158958_155159181_155165940_155166078_155168854_155169022_155183367_155183563_155184696_155184869_155188504_155188685_155188916_155189108_155200059_155200142_155204344_155204429_155206083_155206234_155207908_155208133_155221298_155221401_155260356_155260409_155292911
ENSMUSG00000026470.15_1	chr1	+	2449	8	FSM	ENSMUSG00000026470.15	ENSMUST00000027743.13	4589	8	-1	2141	-1	1271	multi-exon	TRUE	canonical	3	152	junction_7	29.3257565972304	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGGGTATTTTATCT	NA	False	NA	8	True	AATAAA	-18	NA	155034459	155079264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_155034674_155049731_155049902_155053599_155053695_155063523_155063587_155067174_155067301_155068964_155069072_155073086_155073182_155077685
ENSMUSG00000026473.17_0	chr1	+	1351	7	FSM	ENSMUSG00000026473.17	ENSMUST00000086199.12	2792	7	1	1440	1	101	multi-exon	FALSE	canonical	3	76	junction_3	27.7213315376845	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAGTTAATCTTGCTTT	NA	False	NA	20	True	NA	NA	NA	153775690	153784029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_153775806_153778679_153778859_153780282_153780445_153782094_153782242_153782765_153782894_153783031_153783232_153783609
ENSMUSG00000026478.15_0	chr1	-	7593	28	FSM	ENSMUSG00000026478.15	ENSMUST00000027752.15	7622	28	26	3	26	-3	multi-exon	TRUE	canonical	3	518	junction_2	111.881330429904	1268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATCTTGTGTGGCCTAA	NA	False	NA	-4	True	AATAAA	-21	NA	153208506	153094670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_153097476_153099404_153099505_153102129_153102289_153103256_153103457_153104480_153104596_153104787_153104938_153106467_153106613_153107479_153107618_153109230_153109311_153110193_153110400_153115000_153115158_153116062_153116242_153117622_153117766_153118374_153118529_153118976_153119223_153122683_153122873_153122982_153123205_153124785_153124899_153125310_153125501_153125590_153125714_153126132_153126270_153126357_153126457_153126822_153126941_153127697_153127887_153130934_153131102_153133821_153133953_153138135_153138441_153207873
ENSMUSG00000026478.15_12	chr1	-	3431	6	ISM	ENSMUSG00000026478.15	ENSMUST00000027752.15	7622	28	103692	4	50	-4	3prime_fragment	FALSE	canonical	3	518	junction_2	192.029789355714	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATATCTTGTGTGGCCTA	NA	False	NA	-5	True	AATAAA	-20	NA	153104840	153094671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_153097476_153099404_153099505_153102129_153102289_153103256_153103457_153104480_153104596_153104787
ENSMUSG00000026478.15_2	chr1	-	2261	1	NIC	ENSMUSG00000026478.15	novel	1447	3	NA	NA	7960	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTTGTGTGGCCTAAA	NA	False	NA	-3	True	AATAAA	-22	NA	153096930	153094669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_153094700_153096900
ENSMUSG00000026479.14_1	chr1	-	5012	23	FSM	ENSMUSG00000026479.14	ENSMUST00000185356.7	4916	23	-100	4	-100	-4	multi-exon	FALSE	canonical	3	71	junction_14	15.8534090501821	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCTGAGTTTCTGATTT	NA	False	NA	-5	True	AATAAA	-15	NA	153061893	152998505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007568_153007714_153009344_153009495_153010522_153010603_153012443_153012650_153012936_153013100_153015471_153015618_153017271_153017518_153019471_153019655_153020259_153020479_153021384_153021498_153024673_153024864_153026489_153026613_153027782_153027920_153030137_153030237_153034597_153034734_153041864_153042054_153061654
ENSMUSG00000026479.14_11	chr1	-	3456	13	ISM	ENSMUSG00000026479.14	ENSMUST00000185356.7	4916	23	44203	5	10242	-5	3prime_fragment	FALSE	canonical	3	81	junction_12	15.2014253717648	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGCTGAGTTTCTGATT	NA	False	NA	-6	True	AATAAA	-14	NA	153017590	152998506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007568_153007714_153009344_153009495_153010522_153010603_153012443_153012650_153012936_153013100_153015471_153015618_153017271
ENSMUSG00000026479.14_20	chr1	-	2204	4	ISM	ENSMUSG00000026479.14	ENSMUST00000185356.7	4916	23	56657	17	-2156	-17	3prime_fragment	FALSE	canonical	3	102	junction_3	16.0831174424198	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTTAGATGCTGGGGCT	NA	False	NA	-18	True	AATAAA	-2	NA	153005136	152998518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702
ENSMUSG00000026479.14_6	chr1	-	5055	24	FSM	ENSMUSG00000026479.14	ENSMUST00000027753.13	5164	24	92	17	92	-17	multi-exon	FALSE	canonical	1	4	junction_23	24.3679264856456	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTTAGATGCTGGGGCT	NA	False	NA	-18	True	AATAAA	-2	NA	153062101	152998518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007568_153007714_153009344_153009495_153010522_153010603_153012443_153012650_153012936_153013100_153015471_153015618_153017271_153017518_153019471_153019655_153020259_153020479_153021384_153021498_153024673_153024864_153026489_153026613_153027782_153027920_153030137_153030237_153034597_153034734_153041864_153042054_153061654_153061848_153061999
ENSMUSG00000026479.14_9	chr1	-	1773	3	FSM	ENSMUSG00000026479.14	ENSMUST00000189005.2	440	3	81	-1414	81	-3	multi-exon	FALSE	canonical	3	112	junction_2	14	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCTGAGTTTCTGATTTT	NA	False	NA	-4	True	AATAAA	-16	NA	153002899	152998504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_153000030_153002561_153002662_153002751
ENSMUSG00000026480.13_0	chr1	+	1957	15	FSM	ENSMUSG00000026480.13	ENSMUST00000027754.7	2596	15	-103	742	-50	-742	multi-exon	FALSE	canonical	0	0	junction_10	6.91382820210072	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCAATATGACAACTCAG	456	False	NA	NA	False	ATTAAA	-15	NA	152683537	152711999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_152683957_152686668_152686752_152692741_152692851_152697266_152697402_152699967_152700076_152701632_152701693_152703168_152703213_152706102_152706245_152706443_152706513_152707364_152707441_152709073_152709097_152709527_152709680_152709819_152709932_152710777_152710956_152711752
ENSMUSG00000026480.13_2	chr1	+	2040	5	ISM	ENSMUSG00000026480.13	ENSMUST00000027754.7	2596	15	24105	742	8426	-742	3prime_fragment	FALSE	canonical	0	0	junction_1	10.3531396204243	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCAATATGACAACTCAG	NA	False	NA	NA	False	ATTAAA	-15	NA	152707745	152711999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_152709097_152709527_152709680_152709819_152709932_152710777_152710956_152711752
ENSMUSG00000026482.14_0	chr1	-	2642	18	FSM	ENSMUSG00000026482.14	ENSMUST00000027760.14	4572	18	58	1872	58	-73	multi-exon	FALSE	canonical	2	3	junction_17	4.47368313925448	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATGCTCTTAGATCTGA	NA	False	NA	NA	False	ATTAAA	-15	NA	152500910	152394573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_152394948_152397045_152397161_152400395_152400651_152404023_152404211_152407256_152407347_152409256_152409379_152412017_152412051_152413481_152413569_152415687_152415778_152420101_152420187_152424817_152424922_152428171_152428388_152430046_152430172_152433153_152433339_152447348_152447427_152462157_152462367_152499568_152499680_152500734
ENSMUSG00000026483.14_3	chr1	+	3861	14	FSM	ENSMUSG00000026483.14	ENSMUST00000148810.8	6531	14	73	2597	-6	0	multi-exon	FALSE	canonical	3	182	junction_12	16.2156327524439	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTACCAATGTAGA	NA	False	NA	12	True	NA	NA	NA	151447196	151595093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_151447336_151512154_151512286_151517178_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847_151584956_151591410_151591523_151592979
ENSMUSG00000026483.14_34	chr1	+	3535	1	ISM	ENSMUSG00000026483.14	ENSMUST00000148810.8	6531	14	147027	5	41233	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATTCACAGTTGCTCAT	NA	False	NA	6	True	AATAAA	-14	NA	151594150	151597685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_151594200_151597700
ENSMUSG00000026483.14_6	chr1	+	3992	15	NIC	ENSMUSG00000026483.14	novel	4010	15	NA	NA	-47	1	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_1	53.6363416244727	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACTTTACCAATGTAGAA	NA	False	NA	13	True	NA	NA	NA	151446889	151595094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_151447017_151447193_151447336_151512154_151512286_151517178_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847_151584956_151591410_151591523_151592979
ENSMUSG00000026483.14_8	chr1	+	3857	14	NNC	ENSMUSG00000026483.14	novel	4010	15	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	55.3319193754848	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTACCAATGTAGA	NA	False	NA	12	True	NA	NA	NA	151447199	151595093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_151447336_151512154_151512286_151517179_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847_151584956_151591410_151591523_151592979
ENSMUSG00000026484.14_0	chr1	-	2903	7	FSM	ENSMUSG00000026484.14	ENSMUST00000076110.11	3160	7	145	112	1	-112	multi-exon	FALSE	canonical	3	460	junction_6	52.4404424085076	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAATTTTATCTAAGCA	NA	False	NA	-12	True	ATTAAA	-23	NA	151376561	151345268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
ENSMUSG00000026484.14_7	chr1	-	1535	1	ISM	ENSMUSG00000026484.14	ENSMUST00000187048.7	3201	8	29750	122	970	-121	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGGTTATTGAAATTTT	NA	False	NA	-21	True	ATTAAA	-14	NA	151346812	151345277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_151345300_151346800
ENSMUSG00000026489.14_0	chr1	-	2598	15	FSM	ENSMUSG00000026489.14	ENSMUST00000027766.13	4026	15	50	1378	2	403	multi-exon	FALSE	canonical	3	14	junction_5	4.06390281902126	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCCTATGCGTTCCGTG	3915	False	NA	-4	True	AATAAA	-20	NA	180023535	179994180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_179995022_179995886_179995974_179996135_179996202_179996337_179996446_179996644_179996787_179996980_179997075_179997197_179997280_179997626_179997768_179997907_179997994_179999128_179999252_180001815_180001891_180006141_180006209_180006447_180006850_180009626_180009813_180023437
ENSMUSG00000026490.19_1	chr1	+	6445	35	FSM	ENSMUSG00000026490.19	ENSMUST00000076687.12	4917	35	-1118	-410	-480	-12	multi-exon	FALSE	canonical	3	8	junction_12	17.6801894884082	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAAAGAAATGTGTTGT	NA	False	NA	NA	False	AAGAAA	-9	NA	179787556	179990141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_179788853_179826926_179827019_179859069_179859154_179864393_179864490_179867616_179867766_179889354_179889449_179892530_179892732_179894715_179894965_179896861_179896942_179899909_179900077_179902134_179902258_179911936_179912071_179921945_179922057_179928589_179928838_179933611_179933718_179936718_179936844_179938828_179938935_179939309_179939459_179941587_179941680_179945231_179945309_179961861_179961946_179964216_179964323_179965294_179965432_179965996_179966137_179967287_179967370_179968906_179969124_179969841_179969905_179971971_179972566_179974509_179974608_179976717_179976803_179977699_179977824_179978724_179978843_179987170_179987289_179989104_179989263_179989599
ENSMUSG00000026490.19_2	chr1	+	6661	36	FSM	ENSMUSG00000026490.19	ENSMUST00000097450.10	5160	36	-1087	-414	-449	-8	multi-exon	FALSE	canonical	3	39	junction_2	13.9494714990225	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGAAATGTGTTGTTTCT	NA	False	NA	NA	False	AAGAAA	-13	NA	179787587	179990145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_179788853_179826926_179827019_179859069_179859154_179864393_179864490_179867616_179867766_179889354_179889449_179892530_179892732_179894715_179894965_179896861_179896942_179899909_179900077_179902134_179902258_179911936_179912071_179921508_179921752_179921945_179922057_179928589_179928838_179933611_179933718_179936718_179936844_179938828_179938935_179939309_179939459_179941587_179941680_179945231_179945309_179961861_179961946_179964216_179964323_179965294_179965432_179965996_179966137_179967287_179967370_179968906_179969124_179969841_179969905_179971971_179972566_179974509_179974608_179976717_179976803_179977699_179977824_179978724_179978843_179987170_179987289_179989104_179989263_179989599
ENSMUSG00000026490.19_24	chr1	+	3571	22	ISM	ENSMUSG00000026490.19	ENSMUST00000076687.12	4917	35	139913	-410	-121	-12	3prime_fragment	FALSE	canonical	3	58	junction_3	11.6991772488205	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAAAGAAATGTGTTGT	NA	False	NA	NA	False	AAGAAA	-9	NA	179928587	179990141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_179928838_179933611_179933718_179936718_179936844_179938828_179938935_179939309_179939459_179941587_179941680_179945231_179945309_179961861_179961946_179964216_179964323_179965294_179965432_179965996_179966137_179967287_179967370_179968906_179969124_179969841_179969905_179971971_179972566_179974509_179974608_179976717_179976803_179977699_179977824_179978724_179978843_179987170_179987289_179989104_179989263_179989599
ENSMUSG00000026490.19_31	chr1	+	2437	1	ISM	ENSMUSG00000026490.19	ENSMUST00000111117.8	9161	37	202581	1	2159	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTGAGTATTCTATTTC	NA	False	NA	1	True	AATAAA	-14	NA	179990730	179993167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_179990700_179993200
ENSMUSG00000026490.19_4	chr1	+	6818	37	NIC	ENSMUSG00000026490.19	novel	9161	37	NA	NA	-447	-7	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	17.1587540196301	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAATGTGTTGTTTCTT	NA	False	NA	NA	False	AAGAAA	-14	NA	179787589	179990146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_179788853_179826926_179827019_179852209_179852368_179859069_179859154_179864393_179864490_179867616_179867766_179889354_179889449_179892530_179892732_179894715_179894965_179896861_179896942_179899909_179900077_179902134_179902258_179911936_179912071_179921508_179921752_179921945_179922057_179928589_179928838_179933611_179933718_179936718_179936844_179938828_179938935_179939309_179939459_179941587_179941680_179945231_179945309_179961861_179961946_179964216_179964323_179965294_179965432_179965996_179966137_179967287_179967370_179968906_179969124_179969841_179969905_179971971_179972566_179974509_179974608_179976717_179976803_179977699_179977824_179978724_179978843_179987170_179987289_179989104_179989263_179989599
ENSMUSG00000026490.19_49	chr1	+	3077	19	ISM	ENSMUSG00000026490.19	ENSMUST00000076687.12	4917	35	150168	-411	-61	-11	3prime_fragment	FALSE	canonical	3	61	junction_2	10.2632028788938	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAGAAATGTGTTGTT	NA	False	NA	NA	False	AAGAAA	-10	NA	179938842	179990142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_179938935_179939309_179939459_179941587_179941680_179945231_179945309_179961861_179961946_179964216_179964323_179965294_179965432_179965996_179966137_179967287_179967370_179968906_179969124_179969841_179969905_179971971_179972566_179974509_179974608_179976717_179976803_179977699_179977824_179978724_179978843_179987170_179987289_179989104_179989263_179989599
ENSMUSG00000026491.14_0	chr1	-	7290	36	FSM	ENSMUSG00000026491.14	ENSMUST00000027768.14	8506	36	18	1198	18	-1	multi-exon	FALSE	canonical	3	225	junction_19	31.9958415665383	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTGTGTCTGGTAGAT	NA	False	NA	-8	True	AATAAA	-13	NA	179631227	179573656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_179574094_179574744_179574822_179576121_179576256_179579875_179581638_179583013_179583220_179585499_179585595_179587826_179587927_179590109_179590528_179591034_179591239_179593442_179593636_179595859_179595968_179596553_179596705_179596873_179597025_179598153_179598286_179598363_179598509_179602896_179603085_179603572_179603720_179605067_179605125_179605264_179605389_179607168_179607263_179608420_179608526_179609207_179609349_179610511_179610602_179611654_179611746_179612572_179612702_179613634_179613697_179614259_179614442_179614532_179614666_179615753_179615905_179617213_179617299_179617863_179617981_179619910_179620119_179621207_179621389_179623241_179623496_179626775_179626904_179630917
ENSMUSG00000026491.14_7	chr1	-	2789	4	ISM	ENSMUSG00000026491.14	ENSMUST00000027768.14	8506	36	50403	24	303	-24	3prime_fragment	FALSE	canonical	3	310	junction_3	30.6412938514171	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAAACTGACAAGA	NA	False	NA	-25	True	AGTAAA	-33	NA	179580842	179572482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_179574094_179574744_179574822_179576121_179576256_179579875
ENSMUSG00000026492.12_0	chr1	-	2421	8	FSM	ENSMUSG00000026492.12	ENSMUST00000027769.6	2449	8	26	2	-24	-2	multi-exon	FALSE	canonical	3	69	junction_1	6.92820323027551	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTGTGTGTATATGTGT	7904	False	NA	NA	False	AATAAA	-13	NA	179373806	179355621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179372462_179372552_179373386
ENSMUSG00000026492.12_1	chr1	-	2333	7	NIC	ENSMUSG00000026492.12	novel	2449	8	NA	NA	-24	-1	combination_of_known_junctions	FALSE	canonical	2	8	junction_6	27.6008252694653	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTGTGTATATGTGTG	7904	False	NA	NA	False	AATAAA	-14	NA	179373806	179355620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179373386
ENSMUSG00000026492.12_10	chr1	-	1876	6	ISM	ENSMUSG00000026492.12	ENSMUST00000027769.6	2449	8	3847	1	3472	-1	3prime_fragment	FALSE	canonical	3	69	junction_1	7.41350119714026	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTGTGTATATGTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	179369985	179355620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871
ENSMUSG00000026492.12_11	chr1	-	2303	7	NIC	ENSMUSG00000026492.12	novel	2449	8	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	28.2867263727864	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTGTATATGTGTGT	7875	False	NA	NA	False	AATAAA	-15	NA	179373835	179355619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179369871_179370023_179372462_179372552_179373386
ENSMUSG00000026492.12_12	chr1	-	2929	2	ISM	ENSMUSG00000026492.12	ENSMUST00000139993.8	406	5	764	-1237	734	-1	intron_retention	FALSE	canonical	3	69	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTGTGTATATGTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	179360498	179355620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_179356920_179358868
ENSMUSG00000026492.12_2	chr1	-	2388	7	NIC	ENSMUSG00000026492.12	novel	2449	8	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	26.8886593194975	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTGTGTATATGTGTG	7875	False	NA	NA	False	AATAAA	-14	NA	179373835	179355620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_179356920_179358868_179359030_179361197_179361288_179365263_179365413_179369871_179370023_179372462_179372552_179373386
ENSMUSG00000026492.12_9	chr1	-	2682	9	NIC	ENSMUSG00000026492.12	novel	2449	8	NA	NA	-30	-5	combination_of_known_junctions	FALSE	canonical	1	4	junction_7	32.6726185054091	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAGTTTGTGTGTATATG	7848	False	NA	NA	False	AATAAA	-10	NA	179373862	179355624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179370489_179370698_179372462_179372552_179373386
ENSMUSG00000026495.9_0	chr1	+	3155	7	FSM	ENSMUSG00000026495.9	ENSMUST00000027775.9	3580	7	-45	470	-27	-470	multi-exon	FALSE	canonical	3	53	junction_5	10.1447851956888	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-6	NA	178233622	178311608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_178233699_178264966_178265052_178283380_178283454_178302446_178302527_178303249_178303293_178303389_178303457_178308877
ENSMUSG00000026495.9_5	chr1	+	2218	1	Genic_Genomic	ENSMUSG00000026495.9	novel	NA	NA	NA	NA	33653	141	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGCCTTTATTTGTATG	NA	False	NA	NA	False	AATATA	-29	NA	178310001	178312219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_+_178310000_178312200
ENSMUSG00000026496.12_0	chr1	+	3601	23	FSM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	19	253	19	-251	multi-exon	FALSE	canonical	3	1402	junction_6	226.960257925668	4299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGATTTTCTTTTTTATCT	3166	False	NA	17	True	AATAAA	-18	NA	180396512	180428566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
ENSMUSG00000026496.12_127	chr1	+	169	1	ISM	ENSMUSG00000026496.12	ENSMUST00000192411.2	553	2	1876	9	1876	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	1632	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	1233	False	NA	NA	False	NA	NA	NA	180420723	180420892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_180420700_180420900
ENSMUSG00000026497.8_0	chr1	-	2382	2	FSM	ENSMUSG00000026497.8	ENSMUST00000027778.8	2294	2	-99	11	-99	-11	multi-exon	FALSE	canonical	2	5	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAAATTTTTAAAA	NA	False	NA	NA	False	AATAAA	-7	NA	180524698	180520618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_180522487_180524184
ENSMUSG00000026499.6_0	chr1	+	3417	8	FSM	ENSMUSG00000026499.6	ENSMUST00000027780.6	3471	8	14	40	14	-40	multi-exon	FALSE	canonical	3	148	junction_3	19.761847389475	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTCGTCGATGTTTCTGT	NA	False	NA	15	True	ATTAAA	-12	NA	180553621	180581729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180553944_180560730_180560873_180561941_180562083_180564256_180564416_180566027_180566203_180572635_180572823_180574358_180574644_180579723
ENSMUSG00000026499.6_14	chr1	+	1319	1	ISM	ENSMUSG00000026499.6	ENSMUST00000027780.6	3471	8	26564	279	22750	-279	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTTCTTTCAGCCTTTG	871	False	NA	NA	False	AATAAA	-24	NA	180580171	180581490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_180580200_180581500
ENSMUSG00000026500.7_1	chr1	+	448	4	FSM	ENSMUSG00000026500.7	ENSMUST00000027781.7	471	4	17	6	17	-6	multi-exon	FALSE	canonical	3	422	junction_3	43.5150037981793	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTATTGTTTTACATG	NA	False	NA	14	True	ATTAAA	-17	NA	178146711	178150252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_178146774_178149309_178149425_178149506_178149571_178150045
ENSMUSG00000026500.7_2	chr1	+	2990	3	NIC	ENSMUSG00000026500.7	novel	471	4	NA	NA	11	-6	intron_retention	FALSE	canonical	3	422	junction_2	50.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTATTGTTTTACATG	NA	False	NA	14	True	ATTAAA	-17	NA	178146705	178150252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_178149425_178149506_178149571_178150045
ENSMUSG00000026502.14_0	chr1	+	3946	5	FSM	ENSMUSG00000026502.14	ENSMUST00000027783.14	8802	5	145	4711	145	1689	multi-exon	FALSE	canonical	3	163	junction_4	12.7573508221731	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAATGTTTTATAGTT	NA	False	NA	NA	False	ATTAAA	-11	NA	178015242	178080156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_178015524_178065477_178065551_178070177_178070272_178071906_178072049_178076800
ENSMUSG00000026502.14_1	chr1	+	4019	6	FSM	ENSMUSG00000026502.14	ENSMUST00000161075.8	2590	6	260	-1689	145	1689	multi-exon	FALSE	canonical	3	14	junction_1	77.2321176713419	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAATGTTTTATAGTT	NA	False	NA	NA	False	ATTAAA	-11	NA	178015242	178080156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_178015524_178025783_178025857_178065477_178065551_178070177_178070272_178071906_178072049_178076800
ENSMUSG00000026502.14_24	chr1	+	2274	1	ISM	ENSMUSG00000026502.14	ENSMUST00000027783.14	8802	5	62787	4709	-5784	1691	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTTTTATAGTTCT	NA	False	NA	NA	False	ATTAAA	-13	NA	178077884	178080158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_178077900_178080200
ENSMUSG00000026504.18_0	chr1	+	2557	18	FSM	ENSMUSG00000026504.18	ENSMUST00000027785.15	2776	18	214	5	214	-5	multi-exon	FALSE	canonical	1	6	junction_6	3.6941925807312	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGAGTTGTTCCGT	NA	False	NA	2	True	AATAAA	-12	NA	176642439	176847998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_176642622_176652317_176652471_176653764_176653851_176656435_176656550_176658622_176658749_176667850_176667992_176672389_176672455_176672746_176672936_176681329_176681469_176695777_176695931_176702129_176702265_176705555_176705673_176747109_176747253_176773673_176773802_176775846_176775956_176783357_176783490_176839454_176839582_176847680
ENSMUSG00000026509.16_0	chr1	-	3215	20	NNC	ENSMUSG00000026509.16	novel	3225	21	NA	NA	13	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	13.0719297068332	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCGCACCATGCCTTGT	NA	False	NA	-8	True	AATAAA	-11	NA	182345076	182294826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_182295801_182297743_182297803_182298243_182298361_182300085_182300165_182300488_182300558_182301446_182301512_182304815_182304874_182306112_182306179_182307270_182307308_182309011_182309224_182311750_182311938_182314108_182314270_182315279_182315355_182316558_182316645_182317529_182317614_182318431_182318601_182319626_182319761_182320316_182320436_182339771_182339842_182344682
ENSMUSG00000026510.11_0	chr1	+	4354	18	FSM	ENSMUSG00000026510.11	ENSMUST00000117245.2	4361	18	5	2	5	-2	multi-exon	FALSE	canonical	3	97	junction_1	10.65761582562	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTATTTCCTGGTTTTCC	NA	False	NA	6	True	AATAAA	-19	NA	182236741	182289995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_182237016_182256458_182256607_182259123_182259238_182262916_182263000_182264462_182264565_182268401_182268577_182269186_182269369_182269697_182269863_182270197_182270427_182271889_182271998_182272225_182272375_182273838_182274302_182275965_182276745_182280219_182280358_182281262_182281397_182283261_182283429_182286324_182286525_182289251
ENSMUSG00000026510.11_1	chr1	+	4309	18	NIC	ENSMUSG00000026510.11	novel	4361	18	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	2	8	junction_11	27.8886813369296	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTATTTCCTGGTTTTCC	NA	False	NA	6	True	AATAAA	-19	NA	182236738	182289995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_182237016_182256458_182256607_182259123_182259238_182262916_182263000_182264462_182264565_182268401_182268577_182269186_182269369_182269697_182269863_182270197_182270427_182271889_182271998_182272225_182272375_182273886_182274302_182275965_182276745_182280219_182280358_182281262_182281397_182283261_182283429_182286324_182286525_182289251
ENSMUSG00000026511.8_0	chr1	+	1308	3	FSM	ENSMUSG00000026511.8	ENSMUST00000027792.6	1367	3	40	19	9	-19	multi-exon	FALSE	canonical	3	1020	junction_2	65.5	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTGAAGTTTTGGAT	NA	False	NA	7	True	AATAAA	-15	NA	181952354	181959953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_181952541_181956248_181956318_181958900
ENSMUSG00000026511.8_1	chr1	+	1239	2	FSM	ENSMUSG00000026511.8	ENSMUST00000111018.2	823	2	53	-469	9	-19	multi-exon	FALSE	canonical	3	66	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTGAAGTTTTGGAT	NA	False	NA	7	True	AATAAA	-15	NA	181952354	181959953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_181952541_181958900
ENSMUSG00000026516.9_2	chr1	-	3075	23	FSM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	32	6285	32	-164	multi-exon	TRUE	canonical	3	480	junction_18	71.7805568876937	912	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGATATCTATTAACATC	NA	False	NA	-6	True	AATAAA	-17	NA	180971737	180920987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
ENSMUSG00000026519.17_1	chr1	+	3391	23	NIC	ENSMUSG00000026519.17	novel	3306	23	NA	NA	-28	0	combination_of_known_junctions	TRUE	canonical	1	4	junction_1	10.7857611983624	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180769880	180802668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_180770076_180774130_180774331_180776377_180776458_180779696_180779761_180780545_180780584_180782372_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
ENSMUSG00000026519.17_10	chr1	+	3524	23	NIC	ENSMUSG00000026519.17	novel	704	3	NA	NA	-236	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	11.3524490385799	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180773234	180802668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_180773563_180774130_180774331_180776377_180776458_180779696_180779761_180780545_180780584_180782372_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
ENSMUSG00000026519.17_11	chr1	+	3198	22	ISM	ENSMUSG00000026519.17	ENSMUST00000161523.8	3258	23	2529	0	602	0	3prime_fragment	FALSE	canonical	3	28	junction_4	8.29965985697586	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180774128	180802668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_180774331_180776377_180776458_180779696_180779761_180780545_180780584_180782372_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
ENSMUSG00000026519.17_13	chr1	+	2840	16	ISM	ENSMUSG00000026519.17	ENSMUST00000161523.8	3258	23	12164	0	-3868	0	3prime_fragment	FALSE	canonical	3	29	junction_7	8.40211613556701	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180783763	180802668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
ENSMUSG00000026519.17_15	chr1	+	2058	9	ISM	ENSMUSG00000026519.17	ENSMUST00000161523.8	3258	23	21255	0	5223	0	3prime_fragment	FALSE	canonical	3	35	junction_5	8.24621125123532	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180792854	180802668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
ENSMUSG00000026519.17_16	chr1	+	1921	10	NNC	ENSMUSG00000026519.17	novel	3306	23	NA	NA	5209	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	15.1836494255019	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACCCTGCCTCTCATGCT	NA	False	NA	5	True	AATAAA	-21	NA	180792840	180802667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_180792955_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
ENSMUSG00000026519.17_18	chr1	+	1474	5	ISM	ENSMUSG00000026519.17	ENSMUST00000161523.8	3258	23	26057	2	10025	-2	3prime_fragment	FALSE	canonical	3	35	junction_1	3.56195171219375	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCCTGCCTCTCATGC	NA	False	NA	4	True	AATAAA	-20	NA	180797656	180802666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
ENSMUSG00000026519.17_2	chr1	+	3224	23	FSM	ENSMUSG00000026519.17	ENSMUST00000027800.15	3306	23	73	9	-42	0	multi-exon	FALSE	canonical	3	13	junction_1	9.65307299163423	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180770096	180802668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180770125_180774130_180774331_180776377_180776458_180779696_180779761_180780545_180780584_180782372_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
ENSMUSG00000026519.17_28	chr1	+	5086	22	NIC	ENSMUSG00000026519.17	novel	3306	23	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	9.67358420093178	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180770023	180802668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_180770125_180774130_180774331_180776377_180776458_180779696_180779761_180780545_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
ENSMUSG00000026519.17_7	chr1	+	3324	23	NIC	ENSMUSG00000026519.17	novel	654	7	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	10.7857611983624	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180770126	180802668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_180770255_180774130_180774331_180776377_180776458_180779696_180779761_180780545_180780584_180782372_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
ENSMUSG00000026520.9_3	chr1	+	1549	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	30	1	0	0	multi-exon	FALSE	canonical	3	1025	junction_3	51.6120679255884	1090	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTAGTCTCACTGTGTA	46	False	NA	31	True	NA	NA	NA	180731887	180735652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
ENSMUSG00000026523.15_5	chr1	+	2495	5	ISM	ENSMUSG00000026523.15	ENSMUST00000194087.6	3225	27	65171	37857	-3080	33623	internal_fragment	FALSE	canonical	2	15	junction_2	2.91547594742265	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATCTGTGTGTGACTGC	NA	False	NA	NA	False	NA	NA	NA	175591523	175605075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_175591635_175594571_175594721_175597071_175597196_175599738_175599915_175603140
ENSMUSG00000026525.10_1	chr1	-	1783	4	FSM	ENSMUSG00000026525.10	ENSMUST00000027809.8	1913	4	121	9	121	-9	multi-exon	FALSE	canonical	3	10	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAAAGGCTGTTGTCA	NA	False	NA	NA	False	AATAAA	-21	NA	175520221	175489995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_175490721_175491092_175491345_175492875_175493196_175519735
ENSMUSG00000026526.15_0	chr1	-	1587	10	FSM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	37	1012	-25	-2	multi-exon	FALSE	canonical	3	699	junction_3	99.2506491566916	788	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAACAAGACCTTTTTAAA	829	False	NA	-24	True	AATAAA	-29	NA	175453164	175428951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
ENSMUSG00000026544.7_0	chr1	-	1444	2	FSM	ENSMUSG00000026544.7	ENSMUST00000027826.7	1410	2	-47	13	-47	-13	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGAATCTTGGCCATGT	NA	False	NA	NA	False	AATAAA	-11	NA	172460576	172458343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_172459394_172460182
ENSMUSG00000026546.17_1	chr1	+	1813	12	FSM	ENSMUSG00000026546.17	ENSMUST00000085894.12	1908	12	92	3	0	-3	multi-exon	TRUE	canonical	3	18	junction_1	6.26415751889171	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGACAGCTCCACTTCAC	5514	False	NA	3	True	ATTAAA	-16	NA	172348702	172373434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_172348749_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
ENSMUSG00000026546.17_15	chr1	+	1000	6	ISM	ENSMUSG00000026546.17	ENSMUST00000085894.12	1908	12	14170	3	-2403	-3	3prime_fragment	FALSE	canonical	3	24	junction_5	4.54312667664022	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGACAGCTCCACTTCAC	NA	False	NA	3	True	ATTAAA	-16	NA	172362780	172373434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
ENSMUSG00000026546.17_3	chr1	+	2695	10	ISM	ENSMUSG00000026546.17	ENSMUST00000085894.12	1908	12	95	3189	0	2115	5prime_fragment	FALSE	canonical	3	18	junction_1	6.58280588604383	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCCAAGCCCTACTTTTG	5517	False	NA	NA	False	AATAAA	-14	NA	172348705	172370248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_172348749_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751
ENSMUSG00000026546.17_4	chr1	+	1926	12	NIC	ENSMUSG00000026546.17	novel	1908	12	NA	NA	-7	-3	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	9.88362030903773	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGACAGCTCCACTTCAC	5552	False	NA	3	True	ATTAAA	-16	NA	172348740	172373434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_172348900_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
ENSMUSG00000026546.17_7	chr1	+	1884	12	NIC	ENSMUSG00000026546.17	novel	699	5	NA	NA	6	-10	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	9.63979355768114	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTCTAAGGGACAGCTCC	NA	False	NA	-4	True	ATTAAA	-9	NA	172353621	172373427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_172353746_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
ENSMUSG00000026547.16_0	chr1	+	1353	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	228	5	30	-5	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGATTCTGGCTGTTTCTA	NA	False	NA	24	True	AATAAA	-21	NA	172327841	172334942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
ENSMUSG00000026547.16_13	chr1	+	1252	4	ISM	ENSMUSG00000026547.16	ENSMUST00000111228.2	716	5	3908	-639	3908	-8	3prime_fragment	FALSE	canonical	3	984	junction_3	119.08633656115	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGATTCTGGCTGTTT	NA	False	NA	21	True	AATAAA	-18	NA	172332726	172334939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_172332895_172333327_172333503_172333752_172333856_172334133
ENSMUSG00000026548.5_1	chr1	+	1214	4	FSM	ENSMUSG00000026548.5	ENSMUST00000027830.5	1313	4	-74	173	-74	-173	multi-exon	FALSE	canonical	1	3	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCTATGGGGCACCGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	172302850	172305969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_172303107_172303699_172304042_172304772_172305046_172305626
ENSMUSG00000026553.18_0	chr1	+	4332	33	FSM	ENSMUSG00000026553.18	ENSMUST00000135192.8	4622	33	287	3	11	-3	multi-exon	FALSE	canonical	1	295	junction_11	137.915678495956	1988	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCCTGCTTGCCGTT	3051	False	NA	7	True	AATAAA	-12	NA	171910382	171949889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
ENSMUSG00000026554.16_1	chr1	+	2718	14	FSM	ENSMUSG00000026554.16	ENSMUST00000191689.6	2754	14	8	28	8	13	multi-exon	TRUE	canonical	3	418	junction_1	55.9704063816991	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTATTGTCAGAAGTTT	NA	False	NA	28	True	ATTAAA	-30	NA	171975692	172023046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ENSMUSG00000026554.16_13	chr1	+	2845	14	FSM	ENSMUSG00000026554.16	ENSMUST00000192704.6	2859	14	22	-8	-14	8	multi-exon	FALSE	canonical	3	161	junction_1	115.931269170995	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTTAAAATTATTGTCAGA	NA	False	NA	23	True	ATTAAA	-25	NA	171975730	172023041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ENSMUSG00000026554.16_63	chr1	+	3202	11	ISM	ENSMUSG00000026554.16	ENSMUST00000074144.11	4656	13	24385	5	-1391	-5	3prime_fragment	FALSE	canonical	3	475	junction_7	40.6083735207408	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTGCTGCTTTGTGTGGT	NA	False	NA	11	True	AGTAAA	-11	NA	172000129	172023951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ENSMUSG00000026556.16_0	chr1	-	2077	1	ISM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	24257	2	5991	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGGGGGTTTTCTGTTGC	NA	False	NA	-9	True	AATAAA	-13	NA	171830605	171828528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_171828500_171830600
ENSMUSG00000026556.16_1	chr1	-	2267	8	FSM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	11	3420	11	49	multi-exon	FALSE	canonical	3	70	junction_3	8.90768986749708	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACAATACCTGGGAACCA	NA	False	NA	-19	True	GATAAA	-6	NA	171854851	171831946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
ENSMUSG00000026556.16_19	chr1	-	1198	5	ISM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	17645	3420	-621	49	3prime_fragment	FALSE	canonical	3	70	junction_3	11.0989864402116	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACAATACCTGGGAACCA	8363	False	NA	-19	True	GATAAA	-6	NA	171837217	171831946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007
ENSMUSG00000026556.16_33	chr1	-	1878	7	ISM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	14067	3405	-4199	64	3prime_fragment	FALSE	canonical	3	70	junction_3	9.15453742990631	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCACCCTGCCCTCCAATT	8750	False	NA	-4	True	GATAAA	-21	NA	171840795	171831931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649
ENSMUSG00000026558.14_0	chr1	-	2565	1	ISM	ENSMUSG00000026558.14	ENSMUST00000053686.9	4731	7	59843	30	11358	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	246	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAATAAAAACAATGAATT	NA	False	NA	-30	True	AATAAA	-2	NA	167053046	167050481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_167050500_167053000
ENSMUSG00000026558.14_1	chr1	-	4474	7	FSM	ENSMUSG00000026558.14	ENSMUST00000053686.9	4731	7	219	38	-217	-38	multi-exon	FALSE	canonical	3	994	junction_5	17.625738755203	1468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAGACAAATAAAAAC	NA	False	NA	-38	True	NA	NA	NA	167112670	167050489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167112344
ENSMUSG00000026563.14_0	chr1	+	2019	8	FSM	ENSMUSG00000026563.14	ENSMUST00000027846.8	2215	8	191	5	-29	-5	multi-exon	FALSE	canonical	3	160	junction_4	12.2357789173508	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACCCTTTTCCTGTTTA	NA	False	NA	10	True	AATAAA	-10	NA	166206856	166221185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_166207046_166209695_166209788_166209965_166210032_166214234_166214333_166216130_166216341_166217404_166217557_166219391_166219555_166220136
ENSMUSG00000026564.10_0	chr1	-	3909	5	ISM	ENSMUSG00000026564.10	ENSMUST00000085992.4	4018	6	697	0	697	0	3prime_fragment	FALSE	canonical	3	43	junction_3	2.77263412660235	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTCTTCATTCTGGT	NA	False	NA	-6	True	ATTAAA	-14	NA	165954768	165925721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_165928956_165935541_165935760_165937620_165937853_165939599_165939695_165954638
ENSMUSG00000026564.10_13	chr1	-	3417	2	ISM	ENSMUSG00000026564.10	ENSMUST00000085992.4	4018	6	19741	0	19741	0	3prime_fragment	FALSE	canonical	3	49	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTCTTCATTCTGGT	NA	False	NA	-6	True	ATTAAA	-14	NA	165935724	165925721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_165928956_165935541
ENSMUSG00000026564.10_2	chr1	-	4013	6	FSM	ENSMUSG00000026564.10	ENSMUST00000192369.6	4045	6	26	6	0	-1	multi-exon	FALSE	canonical	1	3	junction_5	17.4768418199628	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATATTTCTTCATTCTGG	NA	False	NA	-7	True	ATTAAA	-13	NA	165955465	165925722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_165928956_165935541_165935760_165937620_165937853_165939599_165939695_165954638_165954769_165955360
ENSMUSG00000026564.10_3	chr1	-	4009	6	FSM	ENSMUSG00000026564.10	ENSMUST00000085992.4	4018	6	9	0	9	0	multi-exon	FALSE	canonical	2	3	junction_5	17.4768418199628	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTCTTCATTCTGGT	NA	False	NA	-6	True	ATTAAA	-14	NA	165955456	165925721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_165928956_165935541_165935760_165937620_165937853_165939599_165939695_165954638_165954773_165955360
ENSMUSG00000026564.10_5	chr1	-	2659	1	ISM	ENSMUSG00000026564.10	ENSMUST00000192369.6	4045	6	27111	5	27085	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTCTTCATTCTGGT	6647	False	NA	-6	True	ATTAAA	-14	NA	165928380	165925721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_165925700_165928400
ENSMUSG00000026565.19_0	chr1	-	3275	1	ISM	ENSMUSG00000026565.19	ENSMUST00000111427.9	13050	17	66520	0	11732	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACATTGTCTGTGTCTCT	5000	False	NA	-9	True	ATTAAA	-17	NA	165695997	165692722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_165692700_165696000
ENSMUSG00000026565.19_1	chr1	-	2638	17	FSM	ENSMUSG00000026565.19	ENSMUST00000160260.9	13022	17	62	10322	-1	12	multi-exon	FALSE	canonical	2	8	junction_3	5.36153837531729	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	9707	False	NA	3	True	NA	NA	NA	165830185	165703044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165710615_165710688_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
ENSMUSG00000026565.19_3	chr1	-	2538	16	ISM	ENSMUSG00000026565.19	ENSMUST00000111427.9	13050	17	3266	10322	3218	12	3prime_fragment	FALSE	canonical	2	8	junction_3	5.33499973966468	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	9992	False	NA	3	True	NA	NA	NA	165759251	165703044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_165703618_165704545_165704635_165707698_165708045_165710615_165710688_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230
ENSMUSG00000026565.19_4	chr1	-	2524	16	FSM	ENSMUSG00000026565.19	ENSMUST00000160908.8	2591	16	5	62	1	-31	multi-exon	FALSE	canonical	3	10	junction_7	5.03940031705713	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATTGCTTCATGGATTGG	9706	False	NA	-40	True	AATAAA	-14	NA	165830186	165703087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
ENSMUSG00000026566.16_0	chr1	-	2275	6	FSM	ENSMUSG00000026566.16	ENSMUST00000111435.9	2285	6	8	2	0	-2	multi-exon	TRUE	canonical	3	372	junction_2	205.630737002035	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGTGTTGTCTGCTTGTT	NA	False	NA	-3	True	AATACA	-17	NA	165462090	165419810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_165421247_165429318_165429425_165432178_165432312_165433177_165433392_165436006_165436174_165461871
ENSMUSG00000026566.16_1	chr1	-	2169	5	FSM	ENSMUSG00000026566.16	ENSMUST00000068705.13	2171	5	0	2	0	-2	multi-exon	FALSE	canonical	3	343	junction_1	201.827896981562	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGTGTTGTCTGCTTGTT	NA	False	NA	-3	True	AATACA	-17	NA	165462090	165419810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_165421247_165432178_165432312_165433177_165433392_165436006_165436174_165461871
ENSMUSG00000026566.16_3	chr1	-	1257	1	ISM	ENSMUSG00000026566.16	ENSMUST00000068705.13	2171	5	41022	3	12254	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGGTGTTGTCTGCTTGT	NA	False	NA	-4	True	AATACA	-16	NA	165421068	165419811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_165419800_165421100
ENSMUSG00000026568.7_0	chr1	+	735	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	195	95	8	0	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGTCTTTACATTTGCC	NA	False	NA	12	True	AATAAA	-17	NA	165288800	165308688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
ENSMUSG00000026568.7_3	chr1	+	676	4	NIC	ENSMUSG00000026568.7	novel	1025	5	NA	NA	23	-3	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	205.825708360793	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTCTGTCTTTACATTT	NA	False	NA	9	True	AATAAA	-14	NA	165288815	165308685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_165289081_165305789_165305875_165307035_165307148_165308471
ENSMUSG00000026571.13_0	chr1	-	3284	19	FSM	ENSMUSG00000026571.13	ENSMUST00000027856.13	4110	19	9	817	9	-10	multi-exon	FALSE	canonical	3	29	junction_4	5.55583332638924	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGATATCCTAAATTTGA	NA	False	NA	-12	True	ATTAAA	-14	NA	165288025	165157083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165165914_165167453_165167593_165178452_165178850_165179040_165179110_165179529_165179646_165184997_165185116_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165239032_165239169_165247679_165247794_165250424_165250611_165251870_165251964_165256822_165256885_165287699
ENSMUSG00000026571.13_14	chr1	-	3039	11	NIC	ENSMUSG00000026571.13	novel	2213	12	NA	NA	13	975	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	12.140840168621	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAAATCTAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	165288021	165193635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_165195075_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165239032_165239169_165247679_165247794_165250424_165250611_165251870_165251964_165256822_165256885_165287699
ENSMUSG00000026571.13_6	chr1	-	236	1	ISM	ENSMUSG00000026571.13	ENSMUST00000027856.13	4110	19	130717	815	22250	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATATCCTAAATTTGACT	3474	False	NA	-10	True	ATTAAA	-16	NA	165157317	165157081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_165157100_165157300
ENSMUSG00000026571.13_8	chr1	-	4775	18	NIC	ENSMUSG00000026571.13	novel	4110	19	NA	NA	15	-53	intron_retention	FALSE	canonical	3	37	junction_1	4.57766504902205	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGCATGTTTGTTGCTT	NA	False	NA	-7	True	AATAAA	-14	NA	165288019	165157126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165167593_165178452_165178850_165179040_165179110_165179529_165179646_165184997_165185116_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165239032_165239169_165247679_165247794_165250424_165250611_165251870_165251964_165256822_165256885_165287699
ENSMUSG00000026571.13_9	chr1	-	3300	20	NIC	ENSMUSG00000026571.13	novel	4110	19	NA	NA	10	-53	combination_of_known_junctions	FALSE	canonical	2	6	junction_10	12.1173852348907	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGCATGTTTGTTGCTT	NA	False	NA	-7	True	AATAAA	-14	NA	165288024	165157126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165165914_165167453_165167593_165178452_165178850_165179040_165179110_165179529_165179646_165184997_165185116_165195014_165195075_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165239032_165239169_165247679_165247794_165250424_165250611_165251870_165251964_165256822_165256885_165287699
ENSMUSG00000026575.16_0	chr1	+	1714	14	NIC	ENSMUSG00000026575.16	novel	1740	14	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	27.275061761302	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGTGACTTTGGTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	164135257	164264863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_164135324_164135628_164135820_164140424_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ENSMUSG00000026575.16_1	chr1	+	1714	14	FSM	ENSMUSG00000026575.16	ENSMUST00000193683.6	1740	14	20	6	20	0	multi-exon	FALSE	canonical	3	68	junction_2	20.0017750691572	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGTGACTTTGGTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	164135260	164264863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_164135324_164135628_164135820_164140421_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ENSMUSG00000026575.16_2	chr1	+	769	5	ISM	ENSMUSG00000026575.16	ENSMUST00000193683.6	1740	14	13	104375	13	-1312	5prime_fragment	FALSE	canonical	3	68	junction_2	26.0959767013998	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATTCAGGGATTGGTTC	NA	False	NA	NA	False	ATTAAA	-12	NA	164135253	164160494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_164135324_164135628_164135820_164140421_164140508_164155861_164155970_164160180
ENSMUSG00000026575.16_6	chr1	+	1649	13	FSM	ENSMUSG00000026575.16	ENSMUST00000191947.6	1635	13	-14	0	-14	0	multi-exon	FALSE	canonical	3	36	junction_1	28.2090411038731	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGTGACTTTGGTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	164135627	164264863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_164135820_164140424_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ENSMUSG00000026575.16_7	chr1	+	1652	13	ISM	ENSMUSG00000026575.16	ENSMUST00000193683.6	1740	14	387	6	-14	0	3prime_fragment	FALSE	canonical	3	68	junction_1	20.4443689612133	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGTGACTTTGGTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	164135627	164264863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_164135820_164140421_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ENSMUSG00000026576.13_0	chr1	-	2243	6	FSM	ENSMUSG00000026576.13	ENSMUST00000027863.13	2580	6	331	6	-2	-6	multi-exon	FALSE	canonical	3	1015	junction_5	105.155123508082	1786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCTCACGTGTGTGAC	NA	False	NA	-22	True	AATAAA	-10	NA	164285593	164264683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_164266109_164266867_164266952_164269025_164269211_164270763_164270920_164281057_164281187_164285329
ENSMUSG00000026576.13_3	chr1	-	1048	1	ISM	ENSMUSG00000026576.13	ENSMUST00000027863.13	2580	6	20195	4	5559	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTCACGTGTGTGACTC	NA	False	NA	-20	True	AATAAA	-12	NA	164265729	164264681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_164264700_164265700
ENSMUSG00000026576.13_5	chr1	-	1612	3	ISM	ENSMUSG00000026576.13	ENSMUST00000027863.13	2580	6	16796	6	2160	-6	3prime_fragment	FALSE	canonical	3	1267	junction_2	13	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCTCACGTGTGTGAC	NA	False	NA	-22	True	AATAAA	-10	NA	164269128	164264683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_164266109_164266867_164266952_164269025
ENSMUSG00000026577.14_0	chr1	-	2555	8	FSM	ENSMUSG00000026577.14	ENSMUST00000086032.4	1602	8	4	-957	-1	216	multi-exon	FALSE	canonical	3	8	junction_7	61.8978750747997	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTAGTGCCCTTTCCTTT	NA	False	NA	-21	True	AATAAA	-16	NA	164135054	164118741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715_164134924_164135010
ENSMUSG00000026577.14_1	chr1	-	2435	7	FSM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	211	-216	-6	216	multi-exon	FALSE	canonical	3	158	junction_1	15.0738920727933	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTAGTGCCCTTTCCTTT	NA	False	NA	-21	True	AATAAA	-16	NA	164134847	164118741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715
ENSMUSG00000026577.14_2	chr1	-	2101	5	ISM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	4893	-216	4676	216	3prime_fragment	FALSE	canonical	3	158	junction_1	18.2619823677497	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTAGTGCCCTTTCCTTT	NA	False	NA	-21	True	AATAAA	-16	NA	164130165	164118741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852
ENSMUSG00000026577.14_3	chr1	-	2429	8	ISM	ENSMUSG00000026577.14	ENSMUST00000027866.11	3948	9	235	1371	23	218	3prime_fragment	FALSE	canonical	3	12	junction_5	75.5604907018347	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTGCCCTTTCCTTTCA	NA	False	NA	-19	True	AATAAA	-18	NA	164134818	164118739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164131472_164131494_164134007_164134086_164134715
ENSMUSG00000026578.7_0	chr1	+	1872	6	FSM	ENSMUSG00000026578.7	ENSMUST00000027867.7	1909	6	32	5	32	-5	multi-exon	FALSE	canonical	2	28	junction_1	8.97552226892675	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAATGTGTGGTGTCATCT	NA	False	NA	15	True	AATAAA	-15	NA	164103185	164115411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_164103331_164105742_164105884_164107435_164108384_164109959_164110107_164113809_164113965_164115075
ENSMUSG00000026578.7_3	chr1	+	2524	4	ISM	ENSMUSG00000026578.7	ENSMUST00000027867.7	1909	6	30	4169	30	-4169	5prime_fragment	FALSE	canonical	2	28	junction_1	11.4406682011537	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCAAGACTCTGTAGGG	NA	False	NA	NA	False	AATAAA	-20	NA	164103183	164111247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_164103331_164105742_164105884_164107435_164108384_164109959
ENSMUSG00000026584.15_0	chr1	+	2918	14	NIC	ENSMUSG00000026584.15	novel	4368	14	NA	NA	239	214	combination_of_known_junctions	FALSE	canonical	3	27	junction_2	22.8377347864782	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAGCTCTTTTATGTGC	NA	False	NA	8	True	AATAAA	-17	NA	163757612	163781585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_163757756_163761047_163761263_163762261_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768675_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
ENSMUSG00000026584.15_1	chr1	+	2966	14	FSM	ENSMUSG00000026584.15	ENSMUST00000027876.11	4368	14	292	1110	252	214	multi-exon	FALSE	canonical	3	75	junction_8	12.9505203112215	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAGCTCTTTTATGTGC	NA	False	NA	8	True	AATAAA	-17	NA	163757625	163781585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_163757756_163761047_163761263_163762200_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768675_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
ENSMUSG00000026584.15_12	chr1	+	3032	14	FSM	ENSMUSG00000026584.15	ENSMUST00000162234.2	4336	14	211	1093	211	214	multi-exon	FALSE	canonical	3	18	junction_6	30.7224644598249	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAGCTCTTTTATGTGC	NA	False	NA	8	True	AATAAA	-17	NA	163757584	163781585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_163757756_163761047_163761263_163762261_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768589_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
ENSMUSG00000026584.15_18	chr1	+	3062	14	NIC	ENSMUSG00000026584.15	novel	4336	14	NA	NA	242	214	combination_of_known_junctions	FALSE	canonical	3	18	junction_6	25.1002722821696	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAGCTCTTTTATGTGC	NA	False	NA	8	True	AATAAA	-17	NA	163757615	163781585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_163757756_163761047_163761263_163762200_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768589_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
ENSMUSG00000026584.15_33	chr1	+	1167	2	FSM	ENSMUSG00000026584.15	ENSMUST00000162920.2	1825	2	874	-216	874	216	multi-exon	FALSE	canonical	3	111	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTCTTTTATGTGCTA	-15	True	NA	10	True	AATAAA	-19	NA	163779655	163781587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_163780186_163780950
ENSMUSG00000026584.15_34	chr1	+	1531	1	ISM	ENSMUSG00000026584.15	ENSMUST00000027876.11	4368	14	23815	16	2367	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGGTTACAATTATTTC	1310	False	NA	NA	False	AATAAA	-14	NA	163781148	163782679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_163781100_163782700
ENSMUSG00000026585.14_0	chr1	+	3846	20	FSM	ENSMUSG00000026585.14	ENSMUST00000027877.7	3946	20	90	10	90	-10	multi-exon	FALSE	canonical	3	150	junction_2	20.2454468052323	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGCACTGTCCAACTCT	NA	False	NA	8	True	ATTAAA	-15	NA	163607241	163744668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163743293
ENSMUSG00000026585.14_1	chr1	+	3915	21	FSM	ENSMUSG00000026585.14	ENSMUST00000077642.12	4012	21	87	10	87	-10	multi-exon	FALSE	canonical	3	16	junction_19	53.7530231707948	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGCACTGTCCAACTCT	NA	False	NA	8	True	ATTAAA	-15	NA	163607238	163744668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163739640_163739707_163743293
ENSMUSG00000026589.15_0	chr1	+	4650	28	FSM	ENSMUSG00000026589.15	ENSMUST00000086130.9	4661	28	6	5	6	-5	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCAAATGCTTGTCTCTG	NA	False	NA	NA	False	ATTAAA	-14	NA	157334303	157395987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_157334431_157334955_157335124_157352354_157352424_157356733_157357075_157358849_157358963_157359622_157359744_157360648_157360749_157362198_157362344_157362930_157363083_157363421_157363484_157365087_157365224_157365682_157365914_157371435_157371534_157373768_157373851_157378576_157378695_157380502_157380615_157382316_157382423_157384334_157384476_157385604_157385719_157387018_157387092_157388252_157388547_157389085_157389154_157392016_157392167_157392330_157392430_157392990_157393100_157393222_157393303_157394197_157394297_157394845
ENSMUSG00000026594.15_0	chr1	-	3916	1	ISM	ENSMUSG00000026594.15	ENSMUST00000172057.8	6863	19	131514	7	5480	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTATAGATTGTGTGGG	NA	False	NA	-6	True	AATAAA	-7	NA	156635658	156631742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_156631700_156635700
ENSMUSG00000026594.15_1	chr1	-	2988	20	FSM	ENSMUSG00000026594.15	ENSMUST00000063199.13	2947	20	-57	16	5	-10	multi-exon	FALSE	canonical	3	93	junction_5	55.0008310186526	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTGAAAATATAAAACCTT	NA	False	NA	-47	True	AATAAA	-22	NA	156767158	156635701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ENSMUSG00000026594.15_3	chr1	-	2910	19	FSM	ENSMUSG00000026594.15	ENSMUST00000027886.14	4237	19	-45	1372	5	-10	multi-exon	FALSE	canonical	3	179	junction_5	32.038605185342	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTGAAAATATAAAACCTT	NA	False	NA	-47	True	AATAAA	-22	NA	156767158	156635701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ENSMUSG00000026594.15_36	chr1	-	2315	20	FSM	ENSMUSG00000026594.15	ENSMUST00000192343.6	4398	20	14	2069	8	1	multi-exon	FALSE	canonical	3	20	junction_15	76.9001222942088	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTTAACTTTGTACTA	NA	False	NA	-5	True	AATAAA	-17	NA	156767155	156636398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156720477_156720583_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ENSMUSG00000026594.15_49	chr1	-	1588	12	ISM	ENSMUSG00000026594.15	ENSMUST00000190648.7	2498	15	11	9745	11	-70	5prime_fragment	FALSE	canonical	3	193	junction_3	27.825311029426	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCTACTGTTTATATT	NA	False	NA	NA	False	AATAAA	-10	NA	156767152	156656191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ENSMUSG00000026594.15_5	chr1	-	3090	21	NIC	ENSMUSG00000026594.15	novel	4398	20	NA	NA	8	-10	combination_of_known_junctions	FALSE	canonical	3	20	junction_16	84.0799619409999	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTGAAAATATAAAACCTT	NA	False	NA	-47	True	AATAAA	-22	NA	156767155	156635701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156720477_156720583_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ENSMUSG00000026596.14_0	chr1	+	2091	9	ISM	ENSMUSG00000026596.14	ENSMUST00000027888.13	3549	12	-261	7230	2	5493	5prime_fragment	FALSE	canonical	2	3	junction_2	3.46410161513775	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATGTTTGAAGGATGGC	NA	False	NA	NA	False	AATAAA	-15	NA	156386357	156463056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_156386776_156448408_156448472_156450054_156450226_156452857_156453154_156457422_156457696_156458914_156459000_156460649_156460828_156461322_156461508_156462634
ENSMUSG00000026596.14_4	chr1	+	3968	1	ISM	ENSMUSG00000026596.14	ENSMUST00000166172.9	10151	13	86610	4	29674	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTTTGCAAGTTGTGT	2396	False	NA	25	True	AATAAA	-38	NA	156473166	156477134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_156473200_156477100
ENSMUSG00000026600.13_0	chr1	-	2820	1	ISM	ENSMUSG00000026600.13	ENSMUST00000189661.7	8371	16	46976	11	5218	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAACCCTTCAGTGTG	NA	False	NA	NA	False	AATAAA	-10	NA	156254925	156252105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_156252100_156254900
ENSMUSG00000026600.13_1	chr1	-	3033	16	FSM	ENSMUSG00000026600.13	ENSMUST00000189661.7	8371	16	70	5268	3	0	multi-exon	FALSE	canonical	2	51	junction_13	9.26258903091115	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATGTACTCATATGT	1769	False	NA	-6	True	AATAAA	-20	NA	156301831	156257362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156258686_156259773_156259920_156260416_156260553_156261722_156261822_156263362_156263461_156265273_156265404_156266857_156266904_156267270_156267353_156268076_156268156_156268798_156269082_156269950_156270059_156272124_156272185_156274110_156274263_156285515_156285575_156294250_156294369_156301717
ENSMUSG00000026600.13_2	chr1	-	2914	15	NIC	ENSMUSG00000026600.13	novel	8371	16	NA	NA	8	4	combination_of_known_junctions	FALSE	canonical	1	3	junction_14	20.8683922696112	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGTACTCATATGTGACA	1774	False	NA	-2	True	AATAAA	-24	NA	156301826	156257358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_156258686_156259773_156259920_156260416_156260553_156261722_156261822_156263362_156263461_156265273_156265404_156266857_156266904_156267270_156267353_156268076_156268156_156268798_156269082_156269950_156270059_156272124_156272185_156274110_156274263_156285515_156285575_156301717
ENSMUSG00000026603.14_0	chr1	-	1637	12	NNC	ENSMUSG00000026603.14	novel	1680	12	NA	NA	42	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	98.8538448651751	293	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCTTGGTTTCTGAAT	NA	False	NA	-10	True	AATAAA	-13	NA	189654518	189612692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_189613064_189614305_189614415_189616020_189616199_189617495_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189632014_189632126_189642047_189642112_189654303
ENSMUSG00000026603.14_33	chr1	-	1091	9	ISM	ENSMUSG00000026603.14	ENSMUST00000027897.8	1680	12	38	4699	38	-145	5prime_fragment	FALSE	canonical	3	299	junction_4	18.6543393075177	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATGGTCTCCTGTGTGCT	NA	False	NA	NA	False	AGTAAA	-12	NA	189654522	189617387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189632014_189632126_189642047_189642112_189654303
ENSMUSG00000026604.18_0	chr1	+	3548	13	ISM	ENSMUSG00000026604.18	ENSMUST00000097442.9	10746	19	7	24719	0	0	5prime_fragment	FALSE	canonical	3	11	junction_2	5.22812904711937	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATATTGTTGGATTGTAG	NA	False	NA	2	True	AATAAA	-15	NA	189460471	189584173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_189460862_189518832_189519146_189530708_189530879_189554785_189554884_189557226_189557295_189564924_189564996_189565514_189565603_189568537_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220
ENSMUSG00000026604.18_1	chr1	+	4274	19	FSM	ENSMUSG00000026604.18	ENSMUST00000097442.9	10746	19	11	6461	4	166	multi-exon	FALSE	canonical	3	10	junction_17	4.78713553878169	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGTTCTGTGAGTTATT	NA	False	NA	NA	False	NA	NA	NA	189460475	189602431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_189460862_189518832_189519146_189530708_189530879_189554785_189554884_189557226_189557295_189564924_189564996_189565514_189565603_189568537_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220_189583705_189587121_189587266_189588830_189589050_189592654_189592784_189595400_189595636_189597568_189597733_189602123
ENSMUSG00000026604.18_10	chr1	+	2118	3	NNC	ENSMUSG00000026604.18	novel	3810	2	NA	NA	-376	-1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	10	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAATATTGTTGGATTGTA	NA	False	NA	1	True	AATAAA	-14	NA	189576863	189584172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_189576951_189578530_189578610_189582220
ENSMUSG00000026604.18_15	chr1	+	3741	1	ISM	ENSMUSG00000026604.18	ENSMUST00000097442.9	10746	19	144679	8	10288	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAAATACCTGTCTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	189605143	189608884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_189605100_189608900
ENSMUSG00000026604.18_18	chr1	+	2299	6	ISM	ENSMUSG00000026604.18	ENSMUST00000128275.2	3158	12	49750	6	-8657	-6	3prime_fragment	FALSE	canonical	3	13	junction_2	6.82934843158555	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATGAGAATATTGTTGGA	NA	False	NA	-4	True	AATAAA	-9	NA	189568582	189584167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220
ENSMUSG00000026604.18_19	chr1	+	2968	5	ISM	ENSMUSG00000026604.18	ENSMUST00000128275.2	3158	12	52129	0	-6278	0	3prime_fragment	FALSE	canonical	3	13	junction_1	7.22841614740048	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATATTGTTGGATTGTAG	NA	False	NA	2	True	AATAAA	-15	NA	189570961	189584173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220
ENSMUSG00000026604.18_6	chr1	+	3291	12	NNC	ENSMUSG00000026604.18	novel	3810	2	NA	NA	10558	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	6.79936798229642	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATATTGTTGGATTGTAG	NA	False	NA	2	True	AATAAA	-15	NA	189529426	189584173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_189529873_189530708_189530879_189554785_189554884_189557226_189557295_189564924_189564996_189565514_189565603_189568537_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220
ENSMUSG00000026604.18_9	chr1	+	2917	9	NNC	ENSMUSG00000026604.18	novel	3810	2	NA	NA	-376	234	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	6.18339510301582	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAACCACACGTTGACT	NA	False	NA	NA	False	AATATA	-10	NA	189576863	189602499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_189576951_189578530_189578610_189582220_189583705_189587121_189587266_189588830_189589050_189592654_189592784_189595400_189595636_189597568_189597733_189602123
ENSMUSG00000026605.15_0	chr1	-	176	1	ISM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	47295	10	8065	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAGAGAACAG	NA	False	NA	NA	False	NA	NA	NA	189372988	189372812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_189372800_189373000
ENSMUSG00000026605.15_1	chr1	-	9849	18	FSM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	5	1276	5	814	multi-exon	FALSE	canonical	3	128	junction_7	50.2666247525517	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATGATACATGTCTTT	NA	False	NA	49	True	AGTAAA	-9	NA	189420278	189374078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_189375000_189378998_189379178_189380807_189381285_189382758_189382919_189383344_189383498_189384457_189387290_189388841_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
ENSMUSG00000026605.15_3	chr1	-	3462	6	ISM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	34254	1276	-4976	814	3prime_fragment	FALSE	canonical	3	232	junction_3	17.993332098308	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATGATACATGTCTTT	NA	False	NA	49	True	AGTAAA	-9	NA	189386029	189374078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_189375000_189378998_189379178_189380807_189381285_189382758_189382919_189383344_189383498_189384457
ENSMUSG00000026605.15_5	chr1	-	6233	7	ISM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	29931	1276	-9299	814	3prime_fragment	FALSE	canonical	3	192	junction_6	31.7157514318814	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATGATACATGTCTTT	NA	False	NA	49	True	AGTAAA	-9	NA	189390352	189374078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_189375000_189378998_189379178_189380807_189381285_189382758_189382919_189383344_189383498_189384457_189387290_189388841
ENSMUSG00000026608.14_0	chr1	-	3699	18	FSM	ENSMUSG00000026608.14	ENSMUST00000085678.8	3706	18	2	5	2	-5	multi-exon	FALSE	canonical	3	162	junction_13	20.9446461104513	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGCAGTGTGTCTTCAG	NA	False	NA	-7	True	ATTAAA	-15	NA	188740035	188703296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_188704881_188706262_188706402_188706483_188706669_188708807_188708905_188710693_188710850_188713421_188713593_188715206_188715324_188715403_188715492_188719712_188719829_188724759_188724951_188727938_188728030_188728596_188728738_188729158_188729240_188729473_188729533_188732449_188732524_188733539_188733586_188734101_188734156_188739726
ENSMUSG00000026608.14_2	chr1	-	1199	1	ISM	ENSMUSG00000026608.14	ENSMUST00000193143.6	3934	18	35530	5	1441	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGCAGTGTGTCTTCAG	NA	False	NA	-7	True	ATTAAA	-15	NA	188704495	188703296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_188703300_188704500
ENSMUSG00000026608.14_8	chr1	-	3693	18	NIC	ENSMUSG00000026608.14	novel	3706	18	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	46.7422439581393	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGCAGTGTGTCTTCAG	NA	False	NA	-7	True	ATTAAA	-15	NA	188740035	188703296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_188704881_188706262_188706396_188706483_188706669_188708807_188708905_188710693_188710850_188713421_188713593_188715206_188715324_188715403_188715492_188719712_188719829_188724759_188724951_188727938_188728030_188728596_188728738_188729158_188729240_188729473_188729533_188732449_188732524_188733539_188733586_188734101_188734156_188739726
ENSMUSG00000026614.8_0	chr1	+	3443	3	FSM	ENSMUSG00000026614.8	ENSMUST00000238198.2	3506	3	56	7	56	-7	multi-exon	FALSE	canonical	3	7	junction_1	2	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGAACTGTATTGAGAGA	NA	False	NA	NA	False	AATAAA	-23	NA	185187100	185197950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_185188627_185194883_185195124_185196273
ENSMUSG00000026614.8_1	chr1	+	2802	4	FSM	ENSMUSG00000026614.8	ENSMUST00000061093.7	5836	4	17	3017	17	-15	multi-exon	FALSE	canonical	1	2	junction_1	3.68178700572909	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCACATAACTGAACTGTA	NA	False	NA	NA	False	AATAAA	-15	NA	185187061	185197942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_185187877_185188548_185188627_185194883_185195124_185196273
ENSMUSG00000026614.8_2	chr1	+	5770	4	FSM	ENSMUSG00000026614.8	ENSMUST00000238677.2	5684	4	-99	13	91	-13	multi-exon	FALSE	canonical	1	2	junction_1	3.68178700572909	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCAAAGCAAATGGGTTC	NA	False	NA	NA	False	ATTAAA	-6	NA	185187135	185200946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_185187877_185188510_185188627_185194883_185195124_185196273
ENSMUSG00000026614.8_4	chr1	+	3547	1	ISM	ENSMUSG00000026614.8	ENSMUST00000061093.7	5836	4	10341	27	10151	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATTAAACAGACAGCTCA	NA	False	NA	NA	False	NA	NA	NA	185197385	185200932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_185197400_185200900
ENSMUSG00000026615.15_1	chr1	+	4868	32	FSM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	26	12	12	-12	multi-exon	FALSE	canonical	3	1945	junction_14	331.30791485156	5290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTATTTTATCTATTTG	NA	False	NA	10	True	AATAAA	-12	NA	185095266	185160545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
ENSMUSG00000026617.17_2	chr1	+	2160	9	FSM	ENSMUSG00000026617.17	ENSMUST00000027916.13	2200	9	31	9	0	-9	multi-exon	FALSE	canonical	3	151	junction_6	39.6957176531676	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTGGGTAATTGCCTT	NA	False	NA	NA	False	ATTAAA	-12	NA	185064376	185089965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
ENSMUSG00000026617.17_3	chr1	+	2034	8	FSM	ENSMUSG00000026617.17	ENSMUST00000110965.2	1046	8	-1	-987	-1	-9	multi-exon	FALSE	canonical	3	19	junction_1	90.255872102482	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTGGGTAATTGCCTT	NA	False	NA	NA	False	ATTAAA	-12	NA	185064375	185089965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_185064461_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
ENSMUSG00000026617.17_38	chr1	+	1289	1	ISM	ENSMUSG00000026617.17	ENSMUST00000027916.13	2200	9	24331	9	24273	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTGGGTAATTGCCTT	NA	False	NA	NA	False	ATTAAA	-12	NA	185088676	185089965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_185088700_185090000
ENSMUSG00000026617.17_4	chr1	+	2205	10	FSM	ENSMUSG00000026617.17	ENSMUST00000210277.2	1226	10	8	-987	0	-9	multi-exon	FALSE	canonical	3	122	junction_7	59.2152382790481	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTGGGTAATTGCCTT	NA	False	NA	NA	False	ATTAAA	-12	NA	185064376	185089965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
ENSMUSG00000026617.17_5	chr1	+	2079	9	NIC	ENSMUSG00000026617.17	novel	1226	10	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	92.0101047439899	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGGGTAATTGCCTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	185064376	185089966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_185064461_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
ENSMUSG00000026618.12_2	chr1	-	3464	23	FSM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	30	1977	30	-1134	multi-exon	TRUE	canonical	3	288	junction_20	32.2887284275964	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAAGCTCTATGATATC	NA	False	NA	-3	True	ATTAAA	-16	NA	185061563	185018899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_185019389_185020236_185020382_185021549_185021741_185022682_185022829_185023515_185023623_185026940_185027073_185027751_185027878_185028607_185028711_185029669_185029779_185034904_185034999_185035495_185035599_185048090_185048252_185050003_185050156_185050760_185050852_185053033_185053204_185054596_185054713_185055017_185055109_185055189_185055300_185055382_185055433_185055863_185056013_185057699_185057860_185059816_185059940_185061217
ENSMUSG00000026618.12_45	chr1	-	2552	18	ISM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	30	9852	30	460	5prime_fragment	FALSE	canonical	3	288	junction_15	34.0313309744017	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGGATTTTTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	185061563	185026774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_185027073_185027751_185027878_185028607_185028711_185029669_185029779_185034904_185034999_185035495_185035599_185048090_185048252_185050003_185050156_185050760_185050852_185053033_185053204_185054596_185054713_185055017_185055109_185055189_185055300_185055382_185055433_185055863_185056013_185057699_185057860_185059816_185059940_185061217
ENSMUSG00000026620.12_0	chr1	-	3128	18	FSM	ENSMUSG00000026620.12	ENSMUST00000027929.10	4221	18	-358	1451	-358	-1451	multi-exon	FALSE	canonical	3	41	junction_17	8.12446431558567	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTTGTCTAGATCTCCAC	2898	False	NA	1	True	AATAAA	-23	NA	184732125	184630436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_184631076_184633005_184633051_184637599_184637852_184639279_184639445_184640525_184640627_184644192_184644387_184644678_184644833_184646713_184646827_184648275_184648376_184651506_184651627_184651714_184651952_184653748_184653806_184658012_184658084_184660230_184660297_184661518_184661568_184675402_184675457_184676993_184677198_184731618
ENSMUSG00000026620.12_1	chr1	-	3133	18	NNC	ENSMUSG00000026620.12	novel	4221	18	NA	NA	-361	-1452	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	12.8795323261824	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTGTCTAGATCTCCA	2895	False	NA	0	True	AATAAA	-22	NA	184732128	184630437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_184631076_184633005_184633051_184637599_184637855_184639279_184639445_184640525_184640627_184644192_184644387_184644678_184644833_184646713_184646827_184648275_184648376_184651506_184651627_184651714_184651952_184653748_184653806_184658012_184658084_184660230_184660297_184661518_184661568_184675402_184675457_184676993_184677198_184731618
ENSMUSG00000026620.12_3	chr1	-	2596	17	ISM	ENSMUSG00000026620.12	ENSMUST00000027929.10	4221	18	54586	1460	54491	-1460	3prime_fragment	FALSE	canonical	3	43	junction_16	7.62807315119618	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTGTATAGTTGTCTA	NA	False	NA	-8	True	AATAAA	-14	NA	184677181	184630445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_184631076_184633005_184633051_184637599_184637852_184639279_184639445_184640525_184640627_184644192_184644387_184644678_184644833_184646713_184646827_184648275_184648376_184651506_184651627_184651714_184651952_184653748_184653806_184658012_184658084_184660230_184660297_184661518_184661568_184675402_184675457_184676993
ENSMUSG00000026620.12_9	chr1	-	1927	11	ISM	ENSMUSG00000026620.12	ENSMUST00000027929.10	4221	18	80008	1452	79913	-1452	3prime_fragment	FALSE	canonical	3	46	junction_7	6.8854919940408	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTGTCTAGATCTCCA	NA	False	NA	0	True	AATAAA	-22	NA	184651759	184630437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_184631076_184633005_184633051_184637599_184637852_184639279_184639445_184640525_184640627_184644192_184644387_184644678_184644833_184646713_184646827_184648275_184648376_184651506_184651627_184651714
ENSMUSG00000026622.16_0	chr1	+	3148	8	FSM	ENSMUSG00000026622.16	ENSMUST00000027931.8	3227	8	71	8	5	-8	multi-exon	FALSE	canonical	3	373	junction_7	41.1061344049071	899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTATCACTGTGATGTT	NA	False	NA	21	True	TATAAA	-32	NA	191553626	191565154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248
ENSMUSG00000026622.16_1	chr1	+	3127	8	NNC	ENSMUSG00000026622.16	novel	3227	8	NA	NA	5	-8	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_7	134.022233915397	170	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTATCACTGTGATGTT	NA	False	NA	21	True	TATAAA	-32	NA	191553626	191565154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563269
ENSMUSG00000026622.16_31	chr1	+	1355	1	ISM	ENSMUSG00000026622.16	ENSMUST00000027931.8	3227	8	10244	8	4540	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTATCACTGTGATGTT	NA	False	NA	21	True	TATAAA	-32	NA	191563799	191565154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_191563800_191565200
ENSMUSG00000026623.17_1	chr1	+	5750	8	FSM	ENSMUSG00000026623.17	ENSMUST00000110855.8	7233	8	190	1293	-3	-1293	multi-exon	FALSE	canonical	3	33	junction_1	23.0757404197215	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAATGCTTTTAATTC	NA	False	NA	NA	False	AATAAA	-19	NA	191450135	191515074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_191450318_191451465_191451731_191481651_191481771_191488043_191488140_191492085_191492360_191495656_191495784_191508434_191508542_191510494
ENSMUSG00000026623.17_10	chr1	+	5763	8	FSM	ENSMUSG00000026623.17	ENSMUST00000110856.8	2792	8	14	-2985	14	-1293	multi-exon	FALSE	canonical	3	42	junction_1	20.3610271983372	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAATGCTTTTAATTC	NA	False	NA	NA	False	AATAAA	-19	NA	191450514	191515074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_191450710_191451465_191451731_191481651_191481771_191488043_191488140_191492085_191492360_191495656_191495784_191508434_191508542_191510494
ENSMUSG00000026623.17_14	chr1	+	5711	9	NNC	ENSMUSG00000026623.17	novel	2792	8	NA	NA	32	-1293	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	33.6823395861986	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAATGCTTTTAATTC	NA	False	NA	NA	False	AATAAA	-19	NA	191450532	191515074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_191450710_191451465_191451731_191481651_191481771_191488043_191488140_191492085_191492360_191495656_191495784_191508434_191508542_191510494_191513243_191513276
ENSMUSG00000026623.17_21	chr1	+	3343	1	ISM	ENSMUSG00000026623.17	ENSMUST00000110855.8	7233	8	63072	7	62385	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGAATTGGGTGGCCTTG	5138	False	NA	2	True	AATAAA	-11	NA	191513017	191516360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_191513000_191516400
ENSMUSG00000026623.17_3	chr1	+	5925	9	NIC	ENSMUSG00000026623.17	novel	7233	8	NA	NA	-9	-1293	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	32.5998466254061	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAATGCTTTTAATTC	NA	False	NA	NA	False	AATAAA	-19	NA	191450129	191515074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_191450318_191450540_191450710_191451465_191451731_191481651_191481771_191488043_191488140_191492085_191492360_191495656_191495784_191508434_191508542_191510494
ENSMUSG00000026623.17_4	chr1	+	5722	9	NNC	ENSMUSG00000026623.17	novel	7233	8	NA	NA	-9	-1293	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	34.8458659671416	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAATGCTTTTAATTC	NA	False	NA	NA	False	AATAAA	-19	NA	191450129	191515074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_191450318_191451465_191451731_191481651_191481771_191488043_191488140_191492085_191492360_191495656_191495784_191508434_191508542_191510494_191513243_191513276
ENSMUSG00000026626.12_0	chr1	-	3067	13	FSM	ENSMUSG00000026626.12	ENSMUST00000067976.9	3088	13	16	5	16	-5	multi-exon	FALSE	canonical	3	325	junction_3	33.6760506723827	688	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTATGTCATTTGCTCTTT	NA	False	NA	-9	True	AATAAA	-19	NA	191129222	191084176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191085307_191086070_191086173_191086727_191086856_191086938_191087059_191087219_191087271_191088530_191088585_191089083_191089193_191089988_191090049_191091121_191091253_191094445_191094539_191100837_191100940_191104666_191104864_191128432
ENSMUSG00000026627.8_1	chr1	+	2213	8	FSM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	30	3	30	-3	multi-exon	TRUE	canonical	3	75	junction_7	21.6248156769306	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTCCTGCTACCTTTG	NA	False	NA	3	True	AATAAA	-12	NA	191058138	191083108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564_191080673_191081885
ENSMUSG00000026627.8_16	chr1	+	1348	7	ISM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	2279	725	2279	-725	3prime_fragment	FALSE	canonical	3	75	junction_6	15.4560308258262	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAGAGCCTAGATTTGAC	NA	False	NA	-5	True	NA	NA	NA	191060387	191082386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564_191080673_191081885
ENSMUSG00000026628.14_0	chr1	-	1895	4	FSM	ENSMUSG00000026628.14	ENSMUST00000027941.14	1984	4	85	4	85	-4	multi-exon	FALSE	canonical	3	64	junction_2	6.37704215656966	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACGTTAGTGTGGCACTG	NA	False	NA	-4	True	AATAAA	-19	NA	190915452	190902496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_190903877_190904571_190904680_190909427_190909672_190915289
ENSMUSG00000026628.14_1	chr1	-	1003	1	ISM	ENSMUSG00000026628.14	ENSMUST00000027941.14	1984	4	12033	9	11801	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTAAACGTTAGTGTGG	8302	False	NA	-9	True	AATAAA	-14	NA	190903504	190902501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_190902500_190903500
ENSMUSG00000026630.10_0	chr1	+	748	3	FSM	ENSMUSG00000026630.10	ENSMUST00000027943.6	801	3	53	0	-5	0	multi-exon	FALSE	canonical	2	4	junction_2	4.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTCCTTTGTCCATCT	NA	False	NA	NA	False	AATAAA	-12	NA	190830574	190841140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_190830725_190832924_190833030_190840647
ENSMUSG00000026632.18_0	chr1	-	1184	10	FSM	ENSMUSG00000026632.18	ENSMUST00000027945.6	1196	10	22	-10	21	-6	multi-exon	FALSE	canonical	2	15	junction_3	9.99011857466179	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGGAATGATTTGTCT	NA	False	NA	6	True	TATAAA	-26	NA	190795080	190778028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_190778518_190781478_190781557_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ENSMUSG00000026632.18_1	chr1	-	1204	10	FSM	ENSMUSG00000026632.18	ENSMUST00000110893.10	1242	10	17	21	-10	-2	multi-exon	FALSE	canonical	2	9	junction_2	11.4309521329882	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTGTATTTTTAAAAA	NA	False	NA	-9	True	TATAAA	-11	NA	190795112	190778043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_190778518_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ENSMUSG00000026634.17_0	chr1	+	3138	9	FSM	ENSMUSG00000026634.17	ENSMUST00000066632.14	3714	9	99	477	99	-477	multi-exon	FALSE	canonical	3	110	junction_1	32.0263563334951	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATTTAAATTTTTACTC	NA	False	NA	5	True	AATAAA	-5	NA	190660787	190678682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_190660956_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
ENSMUSG00000026634.17_1	chr1	+	4019	8	NIC	ENSMUSG00000026634.17	novel	3714	9	NA	NA	50	-470	intron_retention	FALSE	canonical	3	110	junction_1	33.9861916738224	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTTACTCATTTATT	NA	False	NA	12	True	AATAAA	-12	NA	190660738	190678689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_190660956_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190674445_190675026_190675085_190675973_190676138_190677136
ENSMUSG00000026634.17_19	chr1	+	3028	9	NIC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	-1	-474	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	46.1652940530005	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTAAATTTTTACTCATT	NA	False	NA	8	True	AATAAA	-8	NA	190661046	190678685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_190661102_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
ENSMUSG00000026634.17_2	chr1	+	3149	9	FSM	ENSMUSG00000026634.17	ENSMUST00000110899.7	3673	9	50	474	50	-474	multi-exon	FALSE	canonical	3	10	junction_1	60.2136820000239	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTAAATTTTTACTCATT	NA	False	NA	8	True	AATAAA	-8	NA	190660738	190678685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_190660915_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
ENSMUSG00000026634.17_26	chr1	+	3360	9	NNC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	7	-474	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	58.9888760699846	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTAAATTTTTACTCATT	NA	False	NA	8	True	AATAAA	-8	NA	190661056	190678685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_190661444_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
ENSMUSG00000026634.17_3	chr1	+	2081	8	NIC	ENSMUSG00000026634.17	novel	3714	9	NA	NA	108	-1199	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	62.1285697861577	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	190660796	190677960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_190660956_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
ENSMUSG00000026637.15_0	chr1	-	2223	11	FSM	ENSMUSG00000026637.15	ENSMUST00000195815.3	2214	11	-12	3	-12	-3	multi-exon	FALSE	canonical	1	2	junction_6	1.02469507659596	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGGCCTGGGGCTCCTC	NA	False	NA	NA	False	NA	NA	NA	191776880	191729170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191729969_191731758_191731928_191733717_191733859_191738764_191738858_191741554_191741630_191742389_191742468_191743409_191743575_191746941_191747044_191751193_191751252_191754716_191754936_191776555
ENSMUSG00000026638.16_0	chr1	+	4093	8	FSM	ENSMUSG00000026638.16	ENSMUST00000076521.7	4113	8	17	3	17	-3	multi-exon	FALSE	canonical	3	26	junction_1	3.81190401832181	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAATATAAAGCTA	NA	False	NA	NA	False	AATAAA	-7	NA	192835435	192854328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_192835608_192839523_192839701_192843920_192844126_192844909_192845039_192848073_192848233_192849746_192850140_192850824_192850944_192851589
ENSMUSG00000026638.16_3	chr1	+	3097	3	ISM	ENSMUSG00000026638.16	ENSMUST00000076521.7	4113	8	14430	55	-962	-55	3prime_fragment	FALSE	canonical	3	28	junction_2	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTTGGAGATTTATTGC	8162	False	NA	NA	False	AATAAA	-14	NA	192849848	192854276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_192850140_192850824_192850944_192851589
ENSMUSG00000026638.16_4	chr1	+	1828	1	ISM	ENSMUSG00000026638.16	ENSMUST00000076521.7	4113	8	17082	3	1690	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAATATAAAGCTA	NA	False	NA	NA	False	AATAAA	-7	NA	192852500	192854328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_192852500_192854300
ENSMUSG00000026639.19_1	chr1	+	4028	23	FSM	ENSMUSG00000026639.19	ENSMUST00000016315.16	4056	23	15	13	15	-10	multi-exon	TRUE	canonical	0	0	junction_10	2.42405302290425	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGAAAATGATCTGGCT	NA	False	NA	NA	False	AATAAA	-28	NA	192984315	193026173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_192984450_192985795_192985856_192986743_192986899_193002739_193002855_193003360_193003435_193006044_193006237_193007867_193007932_193008196_193008382_193010201_193010323_193010942_193011132_193012347_193012504_193013055_193013253_193013603_193013716_193014430_193014810_193016487_193016649_193016723_193016942_193017156_193017355_193017664_193017810_193021113_193021322_193021696_193021839_193022192_193022370_193023055_193023210_193025681
ENSMUSG00000026640.13_0	chr1	+	6732	32	FSM	ENSMUSG00000026640.13	ENSMUST00000027952.12	11040	32	2	4306	2	-1664	multi-exon	TRUE	canonical	1	2	junction_18	4.73677577525654	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCCTCCCTGTCCATCCC	NA	False	NA	NA	False	NA	NA	NA	194302134	194494871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_194302706_194325993_194327256_194331763_194331947_194394491_194394627_194428437_194428539_194431619_194431744_194433683_194433838_194434360_194434458_194436627_194436743_194444706_194444908_194446789_194446887_194449678_194449870_194462820_194462973_194468874_194468993_194471086_194471224_194472028_194472197_194472418_194472513_194476036_194476277_194476680_194476825_194477130_194477366_194479214_194479358_194479847_194480117_194481817_194481885_194482082_194482230_194482808_194482969_194483350_194483455_194487210_194487311_194488589_194488781_194489809_194489980_194492369_194492583_194493164_194493316_194494373
ENSMUSG00000026640.13_1	chr1	+	5192	22	ISM	ENSMUSG00000026640.13	ENSMUST00000027952.12	11040	32	1	18801	1	11440	5prime_fragment	FALSE	canonical	1	2	junction_18	3.52252228741084	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTGTCTCTGCTTCCA	NA	False	NA	NA	False	CATAAA	-13	NA	194302133	194480376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_194302706_194325993_194327256_194331763_194331947_194394491_194394627_194428437_194428539_194431619_194431744_194433683_194433838_194434360_194434458_194436627_194436743_194444706_194444908_194446789_194446887_194449678_194449870_194462820_194462973_194468874_194468993_194471086_194471224_194472028_194472197_194472418_194472513_194476036_194476277_194476680_194476825_194477130_194477366_194479214_194479358_194479847
ENSMUSG00000026640.13_13	chr1	+	3152	1	ISM	ENSMUSG00000026640.13	ENSMUST00000027952.12	11040	32	193874	19	8989	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAAAAAATCTTAAAT	NA	False	NA	NA	False	AATAAA	-10	NA	194496006	194499158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_194496000_194499200
ENSMUSG00000026640.13_4	chr1	+	9835	31	ISM	ENSMUSG00000026640.13	ENSMUST00000027952.12	11040	32	24474	19	-557	-19	3prime_fragment	FALSE	canonical	1	2	junction_17	4.77307261857833	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAAAAAATCTTAAAT	NA	False	NA	NA	False	AATAAA	-10	NA	194326606	194499158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_194327256_194331763_194331947_194394491_194394627_194428437_194428539_194431619_194431744_194433683_194433838_194434360_194434458_194436627_194436743_194444706_194444908_194446789_194446887_194449678_194449870_194462820_194462973_194468874_194468993_194471086_194471224_194472028_194472197_194472418_194472513_194476036_194476277_194476680_194476825_194477130_194477366_194479214_194479358_194479847_194480117_194481817_194481885_194482082_194482230_194482808_194482969_194483350_194483455_194487210_194487311_194488589_194488781_194489809_194489980_194492369_194492583_194493164_194493316_194494373
ENSMUSG00000026641.14_0	chr1	+	1744	10	FSM	ENSMUSG00000026641.14	ENSMUST00000161241.8	2167	10	37	386	16	-1	multi-exon	FALSE	canonical	3	185	junction_1	10.3363197596069	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTGTCTGTCTTCCTCC	6774	False	NA	62	True	GATAAA	-14	NA	171238917	171246324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
ENSMUSG00000026641.14_1	chr1	+	1707	10	FSM	ENSMUSG00000026641.14	ENSMUST00000001284.13	1115	10	43	-635	-18	-1	multi-exon	FALSE	canonical	3	42	junction_4	49.4805111903093	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTGTCTGTCTTCCTCC	6780	False	NA	62	True	GATAAA	-14	NA	171238923	171246324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243368_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
ENSMUSG00000026641.14_16	chr1	+	1873	10	FSM	ENSMUSG00000026641.14	ENSMUST00000167546.2	1822	10	-38	-13	-38	-1	multi-exon	FALSE	canonical	3	12	junction_1	58.785863758031	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTGTCTGTCTTCCTCC	7067	False	NA	62	True	GATAAA	-14	NA	171239210	171246324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171239431_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
ENSMUSG00000026641.14_30	chr1	+	534	1	ISM	ENSMUSG00000026641.14	ENSMUST00000161241.8	2167	10	6910	386	763	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTGTCTGTCTTCCTCC	NA	False	NA	62	True	GATAAA	-14	NA	171245790	171246324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_171245800_171246300
ENSMUSG00000026641.14_8	chr1	+	1793	10	NIC	ENSMUSG00000026641.14	novel	2167	10	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	55.998015837865	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTGTCTGTCTTCCTCC	6789	False	NA	62	True	GATAAA	-14	NA	171238932	171246324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_171239009_171241940_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
ENSMUSG00000026643.17_0	chr2	+	4449	14	FSM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	3	9	3	-9	multi-exon	FALSE	canonical	3	230	junction_10	26.4695873268632	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCATTGTTTTGAGTGT	990	False	NA	12	True	AATAAA	-12	NA	3285251	3329905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
ENSMUSG00000026643.17_18	chr2	+	3982	10	ISM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	25303	7	25234	-7	3prime_fragment	FALSE	canonical	3	230	junction_6	28.2449602190865	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTGTTTTGAGTGTTT	NA	False	NA	14	True	AATAAA	-14	NA	3310551	3329907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
ENSMUSG00000026643.17_24	chr2	+	3461	6	ISM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	30578	7	30509	-7	3prime_fragment	FALSE	canonical	3	230	junction_2	29.2205407205274	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTGTTTTGAGTGTTT	NA	False	NA	14	True	AATAAA	-14	NA	3315826	3329907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
ENSMUSG00000026643.17_29	chr2	+	1812	1	ISM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	42847	7	42778	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTGTTTTGAGTGTTT	801	False	NA	14	True	AATAAA	-14	NA	3328095	3329907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_3328100_3329900
ENSMUSG00000026643.17_3	chr2	+	4348	12	FSM	ENSMUSG00000026643.17	ENSMUST00000102989.10	2162	12	-42	-2144	3	-17	multi-exon	TRUE	canonical	3	6	junction_2	78.3416969921083	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTTGTTAATCATTGTT	990	False	NA	4	True	AATAAA	-4	NA	3285251	3329897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_3285444_3305848_3305985_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
ENSMUSG00000026644.8_0	chr2	+	539	4	FSM	ENSMUSG00000026644.8	ENSMUST00000228935.2	534	4	-5	0	-5	0	multi-exon	FALSE	canonical	3	13	junction_2	3.77123616632825	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTCTGTGTATGGAT	1033	False	NA	NA	False	AATAAA	-16	NA	3337199	3342030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_3337259_3341369_3341491_3341591_3341655_3341734
ENSMUSG00000026646.17_0	chr2	-	2387	5	FSM	ENSMUSG00000026646.17	ENSMUST00000127540.2	2331	5	-34	-22	28	0	multi-exon	FALSE	canonical	3	69	junction_4	64.4995155020563	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTCTGGGTCTGGGAGT	NA	False	NA	-11	True	AATAAA	-17	NA	3476040	3458617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_3459767_3460793_3460924_3463517_3463665_3465303_3465964_3475739
ENSMUSG00000026646.17_1	chr2	-	2545	6	FSM	ENSMUSG00000026646.17	ENSMUST00000027956.9	4327	6	16	1766	16	0	multi-exon	FALSE	canonical	3	149	junction_5	33.2024095511154	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTCTGGGTCTGGGAGT	NA	False	NA	-11	True	AATAAA	-17	NA	3476052	3458617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_3459767_3460793_3460924_3463517_3463665_3465303_3465964_3473538_3473685_3475739
ENSMUSG00000026648.19_0	chr2	+	3691	14	NIC	ENSMUSG00000026648.19	novel	2469	14	NA	NA	-6	1257	intron_retention	FALSE	canonical	1	1	junction_5	8.54365746271681	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAGTACTTGAGTATGAT	1015	False	NA	6	True	AATAAA	-17	NA	3425180	3456386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438066_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
ENSMUSG00000026648.19_1	chr2	+	3624	13	NIC	ENSMUSG00000026648.19	novel	2469	14	NA	NA	2	1257	intron_retention	FALSE	canonical	1	1	junction_2	9.10433352249844	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAGTACTTGAGTATGAT	1038	False	NA	6	True	AATAAA	-17	NA	3425203	3456386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_3425364_3426400_3426453_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
ENSMUSG00000026648.19_2	chr2	+	3709	14	FSM	ENSMUSG00000026648.19	ENSMUST00000102988.10	2469	14	17	-1257	2	1257	multi-exon	FALSE	canonical	3	20	junction_5	4.46419019339905	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAGTACTTGAGTATGAT	1038	False	NA	6	True	AATAAA	-17	NA	3425203	3456386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
ENSMUSG00000026648.19_3	chr2	+	3654	13	NIC	ENSMUSG00000026648.19	novel	2469	14	NA	NA	3	1257	intron_retention	FALSE	canonical	0	0	junction_4	9.10547759440559	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAGTACTTGAGTATGAT	1024	False	NA	6	True	AATAAA	-17	NA	3425189	3456386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3438038_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
ENSMUSG00000026648.19_4	chr2	+	3664	13	NIC	ENSMUSG00000026648.19	novel	2469	14	NA	NA	6	1257	intron_retention	FALSE	canonical	0	0	junction_4	9.10547759440559	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAGTACTTGAGTATGAT	1027	False	NA	6	True	AATAAA	-17	NA	3425192	3456386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
ENSMUSG00000026648.19_8	chr2	+	4969	5	ISM	ENSMUSG00000026648.19	ENSMUST00000102988.10	2469	14	17413	-1257	734	1257	3prime_fragment	FALSE	canonical	3	27	junction_3	2.9474565306379	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAGTACTTGAGTATGAT	108	False	NA	6	True	AATAAA	-17	NA	3442599	3456386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
ENSMUSG00000026649.15_0	chr1	+	967	6	FSM	ENSMUSG00000026649.15	ENSMUST00000151340.8	793	6	-4	-170	-4	7	multi-exon	FALSE	canonical	0	0	junction_1	4.40908153700972	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGACCTGGGTTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	170941553	170954518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_170941666_170950614_170950763_170952602_170952666_170952838_170952920_170953602_170953780_170954132
ENSMUSG00000026655.16_0	chr2	+	3116	4	FSM	ENSMUSG00000026655.16	ENSMUST00000027965.11	3156	4	32	8	12	-8	multi-exon	FALSE	canonical	3	121	junction_1	8.49836585598797	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACGCAGCCATGTTTGTC	976	False	NA	11	True	AATAAA	-17	NA	3714526	3783171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_3714674_3773832_3774017_3779454_3779606_3780537
ENSMUSG00000026655.16_6	chr2	+	1702	1	ISM	ENSMUSG00000026655.16	ENSMUST00000226435.2	3602	5	209945	8	6487	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACGCAGCCATGTTTGTC	543	False	NA	11	True	AATAAA	-17	NA	3781469	3783171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_3781500_3783200
ENSMUSG00000026656.16_0	chr1	-	925	2	FSM	ENSMUSG00000026656.16	ENSMUST00000161503.2	802	2	44	-167	44	-9	multi-exon	FALSE	canonical	3	55	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAACCATCTTTCTA	NA	False	NA	NA	False	AGTAAA	-8	NA	170789155	170788135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_170788670_170788764
ENSMUSG00000026656.16_1	chr1	-	1450	4	NIC	ENSMUSG00000026656.16	novel	1462	7	NA	NA	-6966	-3	combination_of_known_splicesites	FALSE	canonical	2	11	junction_2	31.5418593124896	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATCTTTCTATTTACT	NA	False	NA	NA	False	AGTAAA	-14	NA	170796165	170788129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_170788670_170788764_170788803_170794014_170794270_170795548
ENSMUSG00000026656.16_19	chr1	-	626	3	ISM	ENSMUSG00000026656.16	ENSMUST00000159969.8	1578	10	13169	-202	-1748	-9	3prime_fragment	FALSE	canonical	2	8	junction_2	23.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAACCATCTTTCTA	NA	False	NA	NA	False	AGTAAA	-8	NA	170790947	170788135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_170788670_170788764_170788803_170790893
ENSMUSG00000026656.16_2	chr1	-	1414	7	FSM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	39	9	39	-9	multi-exon	FALSE	canonical	3	21	junction_6	22.7943706500823	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAACCATCTTTCTA	NA	False	NA	NA	False	AGTAAA	-8	NA	170803657	170788135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469
ENSMUSG00000026656.16_5	chr1	-	1664	9	NIC	ENSMUSG00000026656.16	novel	1578	10	NA	NA	-25	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	27.0297868101101	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAACCATCTTTCTA	NA	False	NA	NA	False	AGTAAA	-8	NA	170804141	170788135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469_170803617_170803759_170803915_170804005
ENSMUSG00000026656.16_7	chr1	-	1533	5	ISM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	7565	9	-6932	-9	3prime_fragment	FALSE	canonical	3	38	junction_2	18.6346451535842	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAACCATCTTTCTA	NA	False	NA	NA	False	AGTAAA	-8	NA	170796131	170788135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548
ENSMUSG00000026656.16_9	chr1	-	1497	8	NIC	ENSMUSG00000026656.16	novel	1578	10	NA	NA	-187	-9	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	25.2271314910218	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAACCATCTTTCTA	NA	False	NA	NA	False	AGTAAA	-8	NA	170803883	170788135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469_170803617_170803759
ENSMUSG00000026657.18_0	chr2	+	5758	12	FSM	ENSMUSG00000026657.18	ENSMUST00000176828.8	4355	12	43	-1446	24	-11	multi-exon	FALSE	canonical	3	30	junction_5	12.5901706380102	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAATGAAAACACCCCAGT	4476	False	NA	NA	False	ATTAAA	-8	NA	4564609	4618841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_4565102_4570862_4571002_4577108_4577251_4591171_4591306_4595430_4595554_4599349_4599579_4602148_4602206_4605925_4606167_4606925_4607091_4608187_4609063_4610780_4610878_4615777
ENSMUSG00000026657.18_11	chr2	+	3657	3	ISM	ENSMUSG00000026657.18	ENSMUST00000176828.8	4355	12	44001	-1447	37581	-10	3prime_fragment	FALSE	canonical	3	56	junction_1	1	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGAAAACACCCCAGTT	NA	False	NA	NA	False	ATTAAA	-9	NA	4608567	4618842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_4609063_4610780_4610878_4615777
ENSMUSG00000026657.18_12	chr2	+	1986	1	ISM	ENSMUSG00000026657.18	ENSMUST00000177457.8	6538	25	594301	11	45869	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAATGAAAACACCCCAGT	NA	False	NA	NA	False	ATTAAA	-8	NA	4616855	4618841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_4616900_4618800
ENSMUSG00000026657.18_7	chr2	+	4447	6	ISM	ENSMUSG00000026657.18	ENSMUST00000176828.8	4355	12	37527	-1339	31107	-19	3prime_fragment	FALSE	canonical	3	51	junction_3	8.23164625090267	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGGAAATCTGC	4815	False	NA	NA	False	NA	NA	NA	4602093	4618734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_4602206_4605925_4606167_4606925_4607091_4608187_4609063_4610780_4610878_4615777
ENSMUSG00000026659.14_1	chr1	-	1255	6	FSM	ENSMUSG00000026659.14	ENSMUST00000027970.14	1374	6	117	2	-16	-1	multi-exon	FALSE	canonical	3	209	junction_3	62.7917191992702	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTCCTGTGTTAGATGGT	NA	False	NA	-4	True	ATTAAA	-14	NA	170712992	170701758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708598_170712635
ENSMUSG00000026659.14_2	chr1	-	1264	6	FSM	ENSMUSG00000026659.14	ENSMUST00000166393.2	911	6	-23	-330	-12	-1	multi-exon	FALSE	canonical	3	124	junction_5	89.0002247188174	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTCCTGTGTTAGATGGT	NA	False	NA	-4	True	ATTAAA	-14	NA	170712988	170701758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708611_170712635
ENSMUSG00000026662.14_1	chr2	+	2996	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	251	2072	251	348	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGCAGAAACTATACTG	4343	False	NA	8	True	AATAAA	-17	NA	4886625	4913296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026662.14_27	chr2	+	2944	8	ISM	ENSMUSG00000026662.14	ENSMUST00000115019.2	2933	9	2086	-341	-53	341	3prime_fragment	FALSE	canonical	3	440	junction_1	51.033402426894	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCTCTGAGTGCAGAAAC	6859	False	NA	1	True	AATAAA	-10	NA	4889141	4913289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026662.14_3	chr2	+	2891	8	NIC	ENSMUSG00000026662.14	novel	5319	9	NA	NA	252	348	combination_of_known_junctions	FALSE	canonical	3	91	junction_2	174.392707205693	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGCAGAAACTATACTG	4344	False	NA	8	True	AATAAA	-17	NA	4886626	4913296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_4886672_4889142_4889417_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026662.14_44	chr2	+	1579	1	ISM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	25350	2065	22530	355	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTATACTGTTGGACT	NA	False	NA	15	True	AATAAA	-24	NA	4911724	4913303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_4911700_4913300
ENSMUSG00000026662.14_8	chr2	+	3411	9	FSM	ENSMUSG00000026662.14	ENSMUST00000115019.2	2933	9	-130	-348	-130	348	multi-exon	FALSE	canonical	3	45	junction_1	174.928378200908	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGCAGAAACTATACTG	4643	False	NA	8	True	AATAAA	-17	NA	4886925	4913296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_4887387_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026663.7_0	chr1	-	4507	16	FSM	ENSMUSG00000026663.7	ENSMUST00000027974.7	7246	16	7	2732	7	-2732	multi-exon	FALSE	canonical	3	52	junction_10	11.1705963234835	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAATGGCTCAGTGGTT	NA	False	NA	NA	False	AATAAA	-9	NA	170695333	170534974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_170537657_170574674_170574760_170614914_170615030_170616176_170616245_170621525_170621626_170622225_170622340_170627182_170627315_170642991_170643084_170646815_170647002_170662388_170662610_170668249_170668454_170669254_170669382_170676685_170676787_170680473_170680562_170682681_170682759_170695218
ENSMUSG00000026663.7_2	chr1	-	4426	1	ISM	ENSMUSG00000026663.7	ENSMUST00000027974.7	7246	16	158662	10	85262	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTTTGTTGTCTGTCTG	4138	False	NA	-8	True	AATAAA	-8	NA	170536678	170532252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_170532300_170536700
ENSMUSG00000026663.7_4	chr1	-	4502	16	NNC	ENSMUSG00000026663.7	novel	7246	16	NA	NA	9	-2732	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	17.5630926155453	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAATGGCTCAGTGGTT	NA	False	NA	NA	False	AATAAA	-9	NA	170695331	170534974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_170537657_170574674_170574760_170614914_170615027_170616176_170616245_170621525_170621626_170622225_170622340_170627182_170627315_170642991_170643084_170646815_170647002_170662388_170662610_170668249_170668454_170669254_170669382_170676685_170676787_170680473_170680562_170682681_170682759_170695218
ENSMUSG00000026663.7_7	chr1	-	3435	9	ISM	ENSMUSG00000026663.7	ENSMUST00000027974.7	7246	16	48488	2722	-24912	-2722	3prime_fragment	FALSE	canonical	3	53	junction_3	13.2570735835629	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTGGTTAACTTCGCTT	NA	False	NA	NA	False	AATAAA	-19	NA	170646852	170534964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_170537657_170574674_170574760_170614914_170615030_170616176_170616245_170621525_170621626_170622225_170622340_170627182_170627315_170642991_170643084_170646815
ENSMUSG00000026664.8_2	chr2	+	1419	9	FSM	ENSMUSG00000026664.8	ENSMUST00000027975.8	1438	9	13	6	13	-6	multi-exon	FALSE	canonical	3	390	junction_4	31.960669188864	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAGGCATATTAAGTCA	1004	False	NA	3	True	AATAAA	-14	NA	4923842	4943535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117
ENSMUSG00000026667.15_0	chr1	-	7853	8	FSM	ENSMUSG00000026667.15	ENSMUST00000027979.14	7864	8	-2	13	-2	-13	multi-exon	FALSE	canonical	3	88	junction_5	8.63311138842179	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAGAAAAGAAGTGCTCT	NA	False	NA	NA	False	AATAAA	-5	NA	170042968	170021001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_170027583_170032683_170032773_170034682_170034782_170034914_170034992_170036223_170036319_170038599_170038792_170039804_170040098_170042541
ENSMUSG00000026667.15_1	chr1	-	3777	1	ISM	ENSMUSG00000026667.15	ENSMUST00000150821.8	7676	8	17525	13	17525	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAGAAAAGAAGTGCTCT	NA	False	NA	NA	False	AATAAA	-5	NA	170024778	170021001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_170021000_170024800
ENSMUSG00000026669.15_1	chr2	-	3429	20	FSM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	62	3	-14	-3	multi-exon	FALSE	canonical	3	560	junction_19	72.612354435182	1203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAGGCTGTGAAACGTGA	NA	False	NA	-3	True	AATAAA	-35	NA	5017540	4995537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
ENSMUSG00000026669.15_3	chr2	-	3406	19	ISM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	2014	3	1567	-3	3prime_fragment	FALSE	canonical	3	627	junction_5	61.7022920117735	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAGGCTGTGAAACGTGA	NA	False	NA	-3	True	AATAAA	-35	NA	5015588	4995537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499
ENSMUSG00000026670.16_0	chr1	-	2219	10	FSM	ENSMUSG00000026670.16	ENSMUST00000111350.10	2311	10	26	66	15	-1	multi-exon	FALSE	canonical	3	102	junction_2	66.4981202741852	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCCTTGTTTCTACCTT	NA	False	NA	-6	True	AATAAA	-14	NA	170002500	169969572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_169970142_169970965_169971033_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
ENSMUSG00000026670.16_4	chr1	-	2267	11	FSM	ENSMUSG00000026670.16	ENSMUST00000027981.8	2283	11	15	1	15	-1	multi-exon	FALSE	canonical	3	59	junction_3	76.9519330491444	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCCTTGTTTCTACCTT	NA	False	NA	-6	True	AATAAA	-14	NA	170002500	169969572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_169970142_169970965_169971033_169975564_169975613_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
ENSMUSG00000026670.16_5	chr1	-	2270	11	FSM	ENSMUSG00000026670.16	ENSMUST00000111351.10	2287	11	15	2	15	-1	multi-exon	FALSE	canonical	3	181	junction_3	44.8905335232274	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCCTTGTTTCTACCTT	NA	False	NA	-6	True	AATAAA	-14	NA	170002500	169969572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_169970142_169970965_169971033_169975564_169975616_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
ENSMUSG00000026672.12_11	chr2	-	2000	12	ISM	ENSMUSG00000026672.12	ENSMUST00000027986.5	2411	15	17738	0	-9003	0	3prime_fragment	FALSE	canonical	3	32	junction_1	36.244349801893	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTGTTATCTGATTTA	NA	False	NA	-2	True	AGTAAA	-15	NA	5051011	5025454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
ENSMUSG00000026672.12_14	chr2	-	2539	15	FSM	ENSMUSG00000026672.12	ENSMUST00000027986.5	2411	15	-128	0	-15	0	multi-exon	FALSE	canonical	3	32	junction_1	40.4028817925511	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTGTTATCTGATTTA	NA	False	NA	-2	True	AGTAAA	-15	NA	5068877	5025454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
ENSMUSG00000026672.12_4	chr2	-	2094	11	ISM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	17845	2	-9003	0	3prime_fragment	FALSE	canonical	3	118	junction_4	15.7800506970035	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTGTTATCTGATTTA	NA	False	NA	-2	True	AGTAAA	-15	NA	5051011	5025454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
ENSMUSG00000026672.12_9	chr2	-	2631	14	FSM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	-19	2	-13	0	multi-exon	FALSE	canonical	3	74	junction_13	32.625179951441	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTGTTATCTGATTTA	NA	False	NA	-2	True	AGTAAA	-15	NA	5068875	5025454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
ENSMUSG00000026674.10_1	chr1	-	1735	1	ISM	ENSMUSG00000026674.10	ENSMUST00000194690.6	8590	18	136515	5	114898	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATACAGTCTTCTTTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	169801615	169799880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_169799900_169801600
ENSMUSG00000026674.10_6	chr1	-	3220	18	NIC	ENSMUSG00000026674.10	novel	8590	18	NA	NA	-10	276	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	3.09592879222136	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAGTGTGCAGATCCTA	NA	False	NA	NA	False	TATAAA	-15	NA	169938341	169805096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_169805559_169809545_169809696_169811940_169812176_169812445_169812635_169814585_169814714_169815977_169816202_169818001_169818213_169822153_169822285_169823120_169823184_169825499_169825744_169829397_169829582_169831732_169831839_169832223_169832372_169832641_169832874_169834330_169834434_169863481_169863591_169916363_169916514_169938190
ENSMUSG00000026675.13_0	chr1	-	4557	9	FSM	ENSMUSG00000026675.13	ENSMUST00000027989.13	4612	9	48	7	48	-7	multi-exon	FALSE	canonical	3	45	junction_1	8.48528137423857	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGGTTTTAGACTCAG	NA	False	NA	-8	True	AATAAA	-11	NA	169796762	169777110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_169780704_169783503_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
ENSMUSG00000026675.13_1	chr1	-	3210	1	ISM	ENSMUSG00000026675.13	ENSMUST00000027989.13	4612	9	16491	6	12973	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGGTTTTAGACTCAGT	NA	False	NA	-7	True	AATAAA	-12	NA	169780319	169777109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_169777100_169780300
ENSMUSG00000026675.13_10	chr1	-	1395	8	FSM	ENSMUSG00000026675.13	ENSMUST00000111353.4	1446	8	48	3	48	-3	multi-exon	FALSE	canonical	3	56	junction_5	6.15115718331742	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATACTTCTCTGTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	169796762	169783072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
ENSMUSG00000026675.13_2	chr1	-	4501	8	NIC	ENSMUSG00000026675.13	novel	4612	9	NA	NA	48	-6	combination_of_known_junctions	TRUE	canonical	2	2	junction_2	22.7093435773535	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGGTTTTAGACTCAGT	NA	False	NA	-7	True	AATAAA	-12	NA	169796762	169777109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_169780704_169783503_169783603_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
ENSMUSG00000026676.8_0	chr2	+	2691	3	FSM	ENSMUSG00000026676.8	ENSMUST00000027988.8	2670	3	-35	14	-35	-14	multi-exon	FALSE	canonical	3	30	junction_2	4	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAAAGTGAGT	4692	False	NA	NA	False	AATAAA	-28	NA	5142551	5235675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_5143119_5146041_5146217_5233726
ENSMUSG00000026676.8_1	chr2	+	1735	2	ISM	ENSMUSG00000026676.8	ENSMUST00000027988.8	2670	3	-47	88492	-47	-88492	5prime_fragment	FALSE	canonical	3	38	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTAACATTCCATGTTTTA	4680	False	NA	NA	False	AATAAA	-12	NA	5142539	5147197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_5143119_5146041
ENSMUSG00000026683.15_0	chr1	-	1988	14	FSM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	39	378	3	-1	multi-exon	FALSE	canonical	3	65	junction_13	32.5556419455247	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTGTTATCCAGGATGT	NA	False	NA	-10	True	AATAAA	-25	NA	169358994	169325880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
ENSMUSG00000026683.15_1	chr1	-	2055	15	FSM	ENSMUSG00000026683.15	ENSMUST00000028000.13	2068	15	12	1	2	-1	multi-exon	TRUE	canonical	3	87	junction_14	29.0531708199618	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTGTTATCCAGGATGT	NA	False	NA	-10	True	AATAAA	-25	NA	169358985	169325880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
ENSMUSG00000026683.15_25	chr1	-	1208	10	ISM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	41	12182	-5	1	5prime_fragment	FALSE	canonical	3	65	junction_9	38.1284379142101	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTAAAGTGTGGGTTTTTT	NA	False	NA	-2	True	AATACA	-16	NA	169358992	169337684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
ENSMUSG00000026687.15_0	chr1	+	2369	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	217	249	-28	-249	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	1052	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGCTGTGTTTTTCTGTC	NA	False	NA	13	True	AATAAA	-10	NA	167177776	167195852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
ENSMUSG00000026688.6_0	chr1	-	633	6	FSM	ENSMUSG00000026688.6	ENSMUST00000028005.3	1097	6	40	424	40	-424	multi-exon	FALSE	canonical	3	373	junction_1	22.7912263820971	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTAAAGCTCCTGCCTG	4996	False	NA	-9	True	AATAAA	-22	NA	167221370	167199958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_167200212_167201361_167201435_167203020_167203079_167204829_167204904_167205860_167205985_167221319
ENSMUSG00000026688.6_1	chr1	-	515	5	ISM	ENSMUSG00000026688.6	ENSMUST00000028005.3	1097	6	15497	420	15497	-420	3prime_fragment	FALSE	canonical	3	373	junction_1	25.1246890528022	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAGCTCCTGCCTGCATC	NA	False	NA	-5	True	AATAAA	-26	NA	167205913	167199954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_167200212_167201361_167201435_167203020_167203079_167204829_167204904_167205860
ENSMUSG00000026694.20_0	chr1	-	2964	8	FSM	ENSMUSG00000026694.20	ENSMUST00000028017.16	4541	8	30	1547	1	5	multi-exon	FALSE	canonical	3	51	junction_6	17.6704526812185	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGGTTTATCTCAAGT	NA	False	NA	-6	True	NA	NA	NA	162376090	162361242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373336_162374097_162375672
ENSMUSG00000026694.20_10	chr1	-	2072	7	ISM	ENSMUSG00000026694.20	ENSMUST00000028017.16	4541	8	2498	1547	474	5	3prime_fragment	FALSE	canonical	3	51	junction_6	18.8030730348939	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGGTTTATCTCAAGT	NA	False	NA	-6	True	NA	NA	NA	162373622	162361242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373336
ENSMUSG00000026694.20_2	chr1	-	1769	1	ISM	ENSMUSG00000026694.20	ENSMUST00000028017.16	4541	8	14654	2	10465	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACTTGCTTTTTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	162361466	162359697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_162359700_162361500
ENSMUSG00000026694.20_3	chr1	-	4287	7	NIC	ENSMUSG00000026694.20	novel	4541	8	NA	NA	18	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	36.1174780711807	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTCAACTTGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	162376073	162359702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162373336_162374097_162375672
ENSMUSG00000026694.20_4	chr1	-	6075	6	NIC	ENSMUSG00000026694.20	novel	4541	8	NA	NA	4	5	intron_retention	FALSE	canonical	3	82	junction_4	10.5565145763173	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGGTTTATCTCAAGT	NA	False	NA	-6	True	NA	NA	NA	162376087	162361242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162374097_162375672
ENSMUSG00000026694.20_5	chr1	-	2511	8	NIC	ENSMUSG00000026694.20	novel	4541	8	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	8	junction_6	30.8399422959306	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGGTTTATCTCAAGT	NA	False	NA	-6	True	NA	NA	NA	162376097	162361242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373796_162374097_162375672
ENSMUSG00000026694.20_6	chr1	-	2820	5	ISM	ENSMUSG00000026694.20	ENSMUST00000159817.9	2482	8	4833	-3	673	3	3prime_fragment	FALSE	canonical	3	82	junction_4	11.7765657133139	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGTTGGTTTATCTCAA	NA	False	NA	-8	True	NA	NA	NA	162371258	162361244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826
ENSMUSG00000026694.20_7	chr1	-	1742	6	ISM	ENSMUSG00000026694.20	ENSMUST00000159817.9	2482	8	4181	-5	21	5	3prime_fragment	FALSE	canonical	3	74	junction_5	13.1666244725062	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGGTTTATCTCAAGT	NA	False	NA	-6	True	NA	NA	NA	162371910	162361242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754
ENSMUSG00000026694.20_8	chr1	-	2310	7	NIC	ENSMUSG00000026694.20	novel	4541	8	NA	NA	1	5	combination_of_known_splicesites	FALSE	canonical	2	8	junction_5	33.2536547698979	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGGTTTATCTCAAGT	NA	False	NA	-6	True	NA	NA	NA	162376096	162361242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162373796_162374097_162375672
ENSMUSG00000026696.16_0	chr1	+	1325	8	FSM	ENSMUSG00000026696.16	ENSMUST00000135241.8	1461	8	41	95	4	-95	multi-exon	FALSE	canonical	3	271	junction_7	26.2336440784092	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGAGTGTTTGAAAACGA	NA	False	NA	21	True	AATAAA	-17	NA	162398199	162422839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162422114
ENSMUSG00000026696.16_2	chr1	+	2622	8	FSM	ENSMUSG00000026696.16	ENSMUST00000132158.8	2752	8	116	14	4	-8	multi-exon	FALSE	canonical	3	16	junction_7	107.103040220574	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAATGAAAAGTAAGCAC	NA	False	NA	59	True	AATAAA	-10	NA	162398199	162426639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162424617
ENSMUSG00000026698.9_0	chr1	+	1470	2	FSM	ENSMUSG00000026698.9	ENSMUST00000028021.7	2196	2	19	707	19	-707	multi-exon	FALSE	canonical	3	13	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCATTGTCTAGTATTTT	NA	False	NA	10	True	ATTAAA	-13	NA	161796775	161799192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_161796849_161797795
ENSMUSG00000026698.9_1	chr1	+	1456	2	FSM	ENSMUSG00000026698.9	ENSMUST00000111594.3	3290	2	22	1812	20	-707	multi-exon	FALSE	canonical	3	13	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCATTGTCTAGTATTTT	NA	False	NA	10	True	ATTAAA	-13	NA	161796776	161799192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_161796849_161797808
ENSMUSG00000026698.9_2	chr1	+	2309	1	FSM	ENSMUSG00000026698.9	ENSMUST00000193784.2	4207	1	87	1811	13	-707	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCATTGTCTAGTATTTT	NA	False	NA	10	True	ATTAAA	-13	NA	161796883	161799192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_161796900_161799200
ENSMUSG00000026698.9_3	chr1	+	1445	2	FSM	ENSMUSG00000026698.9	ENSMUST00000160881.2	704	2	10	-751	7	-707	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCATTGTCTAGTATTTT	NA	False	NA	10	True	ATTAAA	-13	NA	161796877	161799192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_161796939_161797808
ENSMUSG00000026701.16_1	chr1	-	1430	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	54	903	1	0	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	1111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACCGTTGTCATGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	161078735	161068584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
ENSMUSG00000026705.17_0	chr1	-	3991	12	FSM	ENSMUSG00000026705.17	ENSMUST00000111611.8	4072	12	60	21	-9	2	multi-exon	FALSE	canonical	3	70	junction_3	12.7525722571391	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTTTTAATTTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	160959021	160915965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_160918082_160921250_160921358_160923098_160923308_160925832_160925967_160926711_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
ENSMUSG00000026705.17_1	chr1	-	3470	10	ISM	ENSMUSG00000026705.17	ENSMUST00000111611.8	4072	12	22084	21	-5071	2	3prime_fragment	FALSE	canonical	3	70	junction_3	8.5374989832438	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTTTTAATTTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	160936997	160915965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_160918082_160921250_160921358_160923098_160923308_160925832_160925967_160926711_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791
ENSMUSG00000026705.17_15	chr1	-	2044	8	FSM	ENSMUSG00000026705.17	ENSMUST00000148952.8	4182	8	47	2091	-22	1583	multi-exon	FALSE	canonical	3	82	junction_4	11.5387545750335	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGACTGTATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	160959034	160926105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
ENSMUSG00000026705.17_5	chr1	-	1821	1	ISM	ENSMUSG00000026705.17	ENSMUST00000111611.8	4072	12	41295	21	5408	2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTTTTAATTTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	160917786	160915965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_160916000_160917800
ENSMUSG00000026707.16_1	chr2	-	2368	11	NIC	ENSMUSG00000026707.16	novel	1582	11	NA	NA	14	-474	combination_of_known_junctions	FALSE	canonical	1	1	junction_10	20.4257190815893	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTGAAAGGTGAAGTCTA	960	False	NA	-6	True	AATAAA	-20	NA	15054109	15000415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15041168_15042884_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15053805
ENSMUSG00000026707.16_2	chr2	-	2426	11	FSM	ENSMUSG00000026707.16	ENSMUST00000028034.15	2897	11	-7	478	-7	-478	multi-exon	FALSE	canonical	3	48	junction_2	8.53287759199674	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACTTTGAAAGGTGAAG	971	False	NA	-10	True	AATAAA	-16	NA	15054098	15000419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15041168_15042884_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15053732
ENSMUSG00000026707.16_4	chr2	-	4150	10	NIC	ENSMUSG00000026707.16	novel	3149	12	NA	NA	-14	-478	intron_retention	FALSE	canonical	3	48	junction_2	8.45905169363301	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACTTTGAAAGGTGAAG	964	False	NA	-10	True	AATAAA	-16	NA	15054105	15000419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15053732
ENSMUSG00000026708.17_0	chr1	+	1710	5	FSM	ENSMUSG00000026708.17	ENSMUST00000111620.10	1910	5	189	11	6	3	multi-exon	FALSE	canonical	3	79	junction_2	18.1710621593786	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTTTCCAATTGAAGTTA	NA	False	NA	9	True	AATAAA	-15	NA	160898525	160913897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477_160911021_160913557
ENSMUSG00000026708.17_1	chr1	+	1617	5	FSM	ENSMUSG00000026708.17	ENSMUST00000143486.7	1997	5	-15	395	1	5	multi-exon	FALSE	canonical	3	21	junction_2	42.0200844834943	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTCCAATTGAAGTTATT	NA	False	NA	11	True	AATAAA	-17	NA	160898520	160913899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160910477_160911021_160913557
ENSMUSG00000026708.17_11	chr1	+	825	2	ISM	ENSMUSG00000026708.17	ENSMUST00000192150.6	1756	6	12016	-3	6941	3	3prime_fragment	FALSE	canonical	3	102	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTTTCCAATTGAAGTTA	4048	False	NA	9	True	AATAAA	-15	NA	160910535	160913897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_160911021_160913557
ENSMUSG00000026708.17_12	chr1	+	1224	1	ISM	ENSMUSG00000026708.17	ENSMUST00000028035.14	4883	4	14398	386	9086	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTGAAGTTATTTATTC	6193	False	NA	16	True	AATAAA	-22	NA	160912680	160913904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_160912700_160913900
ENSMUSG00000026708.17_2	chr1	+	2158	6	FSM	ENSMUSG00000026708.17	ENSMUST00000192150.6	1756	6	-8	-394	-8	-2	multi-exon	FALSE	canonical	2	3	junction_3	51.3754805330325	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATAATGCTGGTCTTGTCT	NA	False	NA	6	True	NA	NA	NA	160898511	160914288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160907437_160907581_160910477_160911021_160913557
ENSMUSG00000026708.17_3	chr1	+	4157	4	ISM	ENSMUSG00000026708.17	ENSMUST00000143486.7	1997	5	-21	398	-5	2	intron_retention	FALSE	canonical	3	21	junction_2	48.0832611206852	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTTTCCAATTGAAGTT	NA	False	NA	8	True	AATAAA	-14	NA	160898514	160913896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_160898927_160902326_160902501_160905898_160906051_160910477
ENSMUSG00000026708.17_4	chr1	+	1384	4	FSM	ENSMUSG00000026708.17	ENSMUST00000028035.14	4883	4	246	3253	-7	-3	multi-exon	FALSE	canonical	3	79	junction_2	20.7417989148054	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTAGATTTTTTTCTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	160898528	160911037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477
ENSMUSG00000026708.17_8	chr1	+	1758	6	FSM	ENSMUSG00000026708.17	ENSMUST00000192850.6	1914	6	160	-4	36	4	multi-exon	FALSE	canonical	2	3	junction_3	49.9095181303126	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTCCAATTGAAGTTAT	NA	False	NA	10	True	AATAAA	-16	NA	160898621	160913898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160907437_160907581_160910477_160911021_160913557
ENSMUSG00000026709.11_1	chr1	-	2673	17	FSM	ENSMUSG00000026709.11	ENSMUST00000035430.4	3619	17	15	931	-1	-27	multi-exon	FALSE	canonical	3	321	junction_5	41.9044672439586	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAACAAAAAAAT	NA	False	NA	-43	True	NA	NA	NA	160898213	160869101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
ENSMUSG00000026709.11_16	chr1	-	2122	17	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	0	-27	combination_of_known_junctions	TRUE	canonical	3	27	junction_16	96.678510409501	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAACAAAAAAAT	NA	False	NA	-43	True	NA	NA	NA	160898212	160869101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160898112
ENSMUSG00000026718.18_1	chr2	+	2852	14	FSM	ENSMUSG00000026718.18	ENSMUST00000102960.11	5000	14	47	2101	37	-7	multi-exon	FALSE	canonical	3	181	junction_8	24.7443735759998	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAATTTATATTCTGAT	4729	False	NA	20	True	ATTAAA	-22	NA	14078955	14152344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029
ENSMUSG00000026718.18_27	chr2	+	1009	1	ISM	ENSMUSG00000026718.18	ENSMUST00000102960.11	5000	14	72739	1789	12715	305	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTGTGTGTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	14151647	14152656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_14151600_14152700
ENSMUSG00000026718.18_4	chr2	+	2918	15	NIC	ENSMUSG00000026718.18	novel	5000	14	NA	NA	37	-7	combination_of_known_junctions	FALSE	canonical	3	9	junction_8	78.2569029360532	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAATTTATATTCTGAT	4729	False	NA	20	True	ATTAAA	-22	NA	14078955	14152344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14138453_14138520_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029
ENSMUSG00000026718.18_5	chr2	+	6092	13	NIC	ENSMUSG00000026718.18	novel	5000	14	NA	NA	36	-2	intron_retention	TRUE	canonical	3	190	junction_9	22.0749984270793	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATATTCTGATTTTGT	4728	False	NA	25	True	ATTAAA	-27	NA	14078954	14152349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029
ENSMUSG00000026721.17_0	chr1	-	3259	1	ISM	ENSMUSG00000026721.17	ENSMUST00000028052.12	6338	9	129133	6	9429	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGCATGTGTCTAATTT	3095	False	NA	-15	True	AATAAA	-11	NA	160050008	160046749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_160046700_160050000
ENSMUSG00000026721.17_1	chr1	-	8335	26	NIC	ENSMUSG00000026721.17	novel	6338	9	NA	NA	102	-6	intron_retention	FALSE	canonical	1	4	junction_7	11.2214081112844	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGCATGTGTCTAATTT	NA	False	NA	-15	True	AATAAA	-11	NA	160620406	160046749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_160051939_160054054_160054253_160059365_160059438_160064195_160064280_160066100_160066206_160075028_160075140_160085012_160085106_160169605_160169735_160219751_160219794_160269392_160269537_160270760_160270887_160281320_160281396_160299567_160299682_160454784_160454936_160472877_160472972_160509610_160509753_160528281_160528449_160529927_160530031_160537716_160537784_160549702_160549814_160551601_160551760_160561098_160561274_160563117_160563329_160566465_160566659_160568321_160568502_160620305
ENSMUSG00000026721.17_2	chr1	-	5900	8	ISM	ENSMUSG00000026721.17	ENSMUST00000028052.12	6338	9	9492	2	9492	-2	3prime_fragment	FALSE	canonical	1	4	junction_7	5.20204041600946	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTGTCTAATTTTTTT	NA	False	NA	-11	True	AATAAA	-15	NA	160169649	160046745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_160051939_160054054_160054253_160059365_160059438_160064195_160064280_160066100_160066206_160075028_160075140_160085012_160085106_160169605
ENSMUSG00000026721.17_3	chr1	-	3900	27	NIC	ENSMUSG00000026721.17	novel	6338	9	NA	NA	89	2498	combination_of_known_junctions	FALSE	canonical	1	4	junction_7	11.0034959479669	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATCATTTGGCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	160620419	160051113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_160051939_160054054_160054253_160059365_160059438_160064195_160064280_160066100_160066206_160075028_160075140_160085012_160085106_160169605_160169735_160219751_160219794_160269392_160269537_160270760_160270887_160281320_160281396_160299567_160299682_160454784_160454936_160472877_160472972_160509610_160509753_160528281_160528449_160529927_160530031_160537716_160537784_160549702_160549814_160551601_160551760_160561098_160561274_160563117_160563329_160566465_160566659_160568321_160568370_160568453_160568502_160620305
ENSMUSG00000026723.11_10	chr2	-	1907	10	NIC	ENSMUSG00000026723.11	novel	3788	11	NA	NA	11	-1742	combination_of_known_junctions	FALSE	canonical	3	4	junction_9	11.4998658070539	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGATTCTTGATGATTG	9058	False	NA	NA	False	NA	NA	NA	13549450	13515566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13549379
ENSMUSG00000026723.11_5	chr2	-	2018	11	FSM	ENSMUSG00000026723.11	ENSMUST00000124488.7	3788	11	13	1757	-5	-1757	multi-exon	FALSE	canonical	3	23	junction_8	5.37028863283902	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATTGTATTAAATGATAAT	9042	False	NA	NA	False	NA	NA	NA	13549466	13515581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
ENSMUSG00000026723.11_9	chr2	-	1731	12	NIC	ENSMUSG00000026723.11	novel	3788	11	NA	NA	1	-2098	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	13.1840123565697	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATGATCCTTAGAAAATT	9035	False	NA	NA	False	TATAAA	-17	NA	13549473	13515922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13529761_13529809_13530428_13530506_13538194_13538305_13549379
ENSMUSG00000026727.11_0	chr2	-	1458	9	FSM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	110	-22	3	22	multi-exon	FALSE	canonical	3	310	junction_5	20.3588893361106	280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAAAATAACCTA	7153	False	NA	15	True	AATAAA	-34	NA	13276116	13081800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
ENSMUSG00000026728.10_0	chr2	+	1838	10	NIC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	14	-7	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	86.9850278020786	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATACTGTTTTGGTGTG	5	True	NA	6	True	AATAAA	-6	NA	13578776	13587629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_13578872_13579204_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
ENSMUSG00000026728.10_2	chr2	+	1826	9	FSM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	359	8	-11	-7	multi-exon	FALSE	canonical	3	229	junction_1	35.7786161694384	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATACTGTTTTGGTGTG	80	False	NA	6	True	AATAAA	-6	NA	13579121	13587629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
ENSMUSG00000026730.13_0	chr2	+	1836	6	FSM	ENSMUSG00000026730.13	ENSMUST00000154269.7	1232	6	29	-633	1	-1	multi-exon	FALSE	canonical	3	36	junction_1	7.33212111192934	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTATGTGTTTTCCACTTA	4741	False	NA	NA	False	AATAAA	-38	NA	12928880	13006424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_12929010_12979179_12979265_12982970_12983429_12985103_12985370_12999560_12999702_13005667
ENSMUSG00000026730.13_1	chr2	+	1774	5	FSM	ENSMUSG00000026730.13	ENSMUST00000134794.8	3571	5	-45	1842	6	-1	multi-exon	FALSE	canonical	2	8	junction_1	18.3490462967425	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTATGTGTTTTCCACTTA	4718	False	NA	NA	False	AATAAA	-38	NA	12928857	13006424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_12929010_12982970_12983429_12985103_12985370_12999560_12999702_13005667
ENSMUSG00000026730.13_3	chr2	+	1298	4	NIC	ENSMUSG00000026730.13	novel	3571	5	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	1	7	junction_1	21.1712593442672	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTATGTGTTTTCCACT	4734	False	NA	NA	False	AATAAA	-36	NA	12928873	13006422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_12929010_12985103_12985370_12999560_12999702_13005667
ENSMUSG00000026730.13_4	chr2	+	1612	6	NIC	ENSMUSG00000026730.13	novel	1232	6	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	18.9525723847714	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTATGTGTTTTCCACTTA	4761	False	NA	NA	False	AATAAA	-38	NA	12928900	13006424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_12929010_12979179_12979265_12982970_12983225_12985103_12985370_12999560_12999702_13005667
ENSMUSG00000026730.13_5	chr2	+	1364	4	ISM	ENSMUSG00000026730.13	ENSMUST00000154269.7	1232	6	54371	-627	473	-7	3prime_fragment	FALSE	canonical	3	46	junction_1	3.85861230093008	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTACCTATGTGTTTTC	NA	False	NA	NA	False	AATAAA	-32	NA	12983222	13006418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_12983429_12985103_12985370_12999560_12999702_13005667
ENSMUSG00000026737.13_1	chr2	-	2838	10	FSM	ENSMUSG00000026737.13	ENSMUST00000006912.12	3477	10	-121	760	-121	-760	multi-exon	FALSE	canonical	3	72	junction_7	14.3139403690559	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAACCTTCCAGCATC	NA	False	NA	NA	False	ATTAAA	-12	NA	19003058	18847825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_18849272_18850685_18850790_18852244_18852489_18857623_18857738_18870922_18870962_18877094_18877242_18893862_18894016_18911039_18911137_18912865_18912964_19002662
ENSMUSG00000026737.13_2	chr2	-	3406	8	NIC	ENSMUSG00000026737.13	novel	3477	10	NA	NA	-124	-9	combination_of_known_splicesites	FALSE	canonical	2	7	junction_4	32.7008706118891	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTTAGTTTGGCTTCT	NA	False	NA	-9	True	AATAAA	-12	NA	19003061	18847074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_18849272_18850685_18850790_18852244_18852489_18857623_18857738_18893862_18894016_18911039_18911137_18912865_18912964_19002662
ENSMUSG00000026737.13_3	chr2	-	1962	1	ISM	ENSMUSG00000026737.13	ENSMUST00000006912.12	3477	10	153909	1	21903	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGGCTTCTCTGTGCTG	NA	False	NA	-1	True	AATAAA	-20	NA	18849028	18847066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_18847100_18849000
ENSMUSG00000026737.13_5	chr2	-	2690	9	NIC	ENSMUSG00000026737.13	novel	3477	10	NA	NA	-122	-762	combination_of_known_splicesites	FALSE	canonical	3	18	junction_5	29.756301853557	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAAACCTTCCAGCA	NA	False	NA	NA	False	ATTAAA	-10	NA	19003059	18847827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_18849272_18850685_18850790_18852244_18852489_18857623_18857738_18870922_18870962_18893862_18894016_18911039_18911137_18912865_18912964_19002662
ENSMUSG00000026739.14_0	chr2	+	2956	10	FSM	ENSMUSG00000026739.14	ENSMUST00000028071.13	3594	10	141	497	-121	2	multi-exon	FALSE	canonical	3	69	junction_8	5.61303597347337	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACTATGCTCTTTAAT	4796	False	NA	3	True	AATAAA	-16	NA	18681969	18690943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_18682281_18686603_18686735_18687033_18687131_18687649_18687706_18687791_18687843_18687985_18688095_18688179_18688220_18688475_18688575_18688796_18688878_18688962
ENSMUSG00000026739.14_8	chr2	+	1404	1	ISM	ENSMUSG00000026739.14	ENSMUST00000028071.13	3594	10	7711	497	3622	2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACTATGCTCTTTAAT	NA	False	NA	3	True	AATAAA	-16	NA	18689539	18690943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_18689500_18690900
ENSMUSG00000026740.13_16	chr2	-	1147	7	ISM	ENSMUSG00000026740.13	ENSMUST00000166495.8	5497	12	57	80139	38	12750	5prime_fragment	FALSE	canonical	3	55	junction_5	4.48763733927875	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAAGTTGAATTTTCTG	NA	False	NA	NA	False	ATTAAA	-16	NA	18397584	18298698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_18298856_18311783_18311878_18312725_18312824_18313594_18313761_18321168_18321216_18321709_18321812_18397101
ENSMUSG00000026740.13_2	chr2	-	2100	13	FSM	ENSMUSG00000026740.13	ENSMUST00000091418.12	5070	13	85	2885	-84	11	multi-exon	FALSE	canonical	1	1	junction_1	17.4712064710928	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAAAAAACCAATCT	NA	False	NA	NA	False	TTTAAA	-4	NA	18397537	18214028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_18214232_18222055_18222137_18224261_18224711_18227523_18227573_18236514_18236635_18289433_18289598_18298764_18298856_18311783_18311878_18312725_18312824_18313594_18313761_18321168_18321216_18321709_18321812_18397101
ENSMUSG00000026740.13_3	chr2	-	2521	12	FSM	ENSMUSG00000026740.13	ENSMUST00000166495.8	5497	12	38	2938	19	448	multi-exon	FALSE	canonical	3	39	junction_5	8.9016666653772	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGAAAACGCTTTGGG	NA	False	NA	-11	True	AATACA	-40	NA	18397603	18221497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_18222137_18224261_18224711_18227523_18227573_18236514_18236635_18289433_18289598_18298764_18298856_18311783_18311878_18312725_18312824_18313594_18313761_18321168_18321216_18321709_18321812_18397101
ENSMUSG00000026740.13_7	chr2	-	1327	1	ISM	ENSMUSG00000026740.13	ENSMUST00000166495.8	5497	12	177751	4	1823	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTCTGTGTATGTATAA	NA	False	NA	NA	False	AATAAA	-17	NA	18219890	18218563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_18218600_18219900
ENSMUSG00000026743.17_123	chr2	+	3839	14	ISM	ENSMUSG00000026743.17	ENSMUST00000114671.8	5063	24	94968	1	-10647	0	3prime_fragment	FALSE	canonical	3	193	junction_1	26.2502747238371	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTGTGCCCTGCCTT	8209	False	NA	11	True	AATAAA	-15	NA	18164414	18217198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ENSMUSG00000026743.17_124	chr2	+	3437	13	ISM	ENSMUSG00000026743.17	ENSMUST00000114669.2	3865	16	36455	-1	-7640	0	3prime_fragment	FALSE	canonical	3	221	junction_7	21.9829479369806	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTGTGCCCTGCCTT	NA	False	NA	11	True	AATAAA	-15	NA	18167421	18217198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ENSMUSG00000026743.17_137	chr2	+	2135	4	ISM	ENSMUSG00000026743.17	ENSMUST00000114669.2	3865	16	80769	-1	36674	0	3prime_fragment	FALSE	canonical	3	256	junction_2	17.2819751957543	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTGTGCCCTGCCTT	NA	False	NA	11	True	AATAAA	-15	NA	18211735	18217198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_18211956_18212593_18212691_18213560_18213759_18215578
ENSMUSG00000026743.17_141	chr2	+	1216	1	ISM	ENSMUSG00000026743.17	ENSMUST00000028076.15	4917	23	155935	0	40921	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTGTGCCCTGCCTT	NA	False	NA	11	True	AATAAA	-15	NA	18215982	18217198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_18216000_18217200
ENSMUSG00000026743.17_15	chr2	+	4994	23	NIC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	102	junction_1	47.2740384433549	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTGTGCCCTGCCTT	4633	False	NA	11	True	AATAAA	-15	NA	18069437	18217198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ENSMUSG00000026743.17_17	chr2	+	5030	23	FSM	ENSMUSG00000026743.17	ENSMUST00000114680.9	3543	23	-70	-1417	-19	0	multi-exon	FALSE	canonical	3	88	junction_1	48.8940497317777	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTGTGCCCTGCCTT	4623	False	NA	11	True	AATAAA	-15	NA	18069427	18217198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_18069676_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ENSMUSG00000026743.17_37	chr2	+	4912	22	NIC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	59.0850112021047	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTCTGTGCCCTGCCTT	4660	False	NA	11	True	AATAAA	-15	NA	18069464	18217198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
ENSMUSG00000026748.14_2	chr2	+	2733	15	NNC	ENSMUSG00000026748.14	novel	6947	14	NA	NA	-254	-5	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	14.5140677711421	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGACACTTTTGGTTCAAA	4091	False	NA	9	True	AATAAA	-22	NA	16360860	16756495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_16360983_16361295_16362049_16516832_16517045_16552927_16553075_16570146_16570217_16643397_16643521_16654919_16655039_16665584_16665685_16674304_16674401_16674633_16674716_16708127_16708195_16716892_16717041_16718480_16718520_16734063_16734225_16756001
ENSMUSG00000026748.14_3	chr2	+	2771	14	FSM	ENSMUSG00000026748.14	ENSMUST00000028081.13	6947	14	21	4155	21	-5	multi-exon	FALSE	canonical	3	34	junction_8	9.12179261942059	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGACACTTTTGGTTCAAA	120	False	NA	9	True	AATAAA	-22	NA	16361135	16756495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_16362049_16516832_16517045_16552927_16553075_16570146_16570217_16643397_16643521_16654919_16655039_16665584_16665685_16674304_16674401_16674633_16674716_16708127_16708195_16716892_16717041_16718480_16718520_16734063_16734225_16756001
ENSMUSG00000026748.14_4	chr2	+	2761	14	FSM	ENSMUSG00000026748.14	ENSMUST00000114702.2	2146	14	-789	174	24	-6	multi-exon	FALSE	canonical	2	3	junction_10	16.8132801836092	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGACACTTTTGGTTCAA	123	False	NA	8	True	AATAAA	-21	NA	16361138	16756494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_16362049_16516832_16517045_16552927_16553075_16570146_16570217_16643397_16643521_16654919_16655039_16665584_16665685_16674304_16674401_16674633_16674716_16708127_16708189_16716892_16717041_16718480_16718520_16734063_16734225_16756001
ENSMUSG00000026748.14_9	chr2	+	3995	1	ISM	ENSMUSG00000026748.14	ENSMUST00000028081.13	6947	14	395533	8	113141	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAGTACATTGATTCGTG	1324	False	NA	NA	False	TATAAA	-15	NA	16756647	16760642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_16756600_16760600
ENSMUSG00000026749.12_1	chr2	+	2239	10	FSM	ENSMUSG00000026749.12	ENSMUST00000054234.10	10338	10	58	8041	33	799	multi-exon	FALSE	canonical	3	219	junction_1	27.0760246548697	397	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTAAGTGCTGGAGGAA	NA	False	NA	10	True	TATAAA	-14	NA	38401712	38476577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_38401806_38440564_38440684_38447827_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
ENSMUSG00000026750.7_0	chr2	-	960	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	169	31	2	-31	multi-exon	FALSE	canonical	3	1531	junction_5	118.933011500129	557	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAAAAGA	2382	False	NA	-49	True	AAAACA	-23	NA	38533930	38478078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ENSMUSG00000026753.6_0	chr2	-	3416	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	136	563	5	-563	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTGTCTACTTTGAATT	NA	False	NA	-16	True	AATAAA	-19	NA	39116327	39084928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
ENSMUSG00000026753.6_1	chr2	-	2425	1	ISM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	29651	22	4190	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGGAAGTTTGTGAAAAAT	NA	False	NA	NA	False	AATAAA	-7	NA	39086812	39084387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_39084400_39086800
ENSMUSG00000026754.17_0	chr2	-	2388	21	NIC	ENSMUSG00000026754.17	novel	4869	23	NA	NA	7	-1337	combination_of_known_junctions	FALSE	canonical	3	34	junction_8	7.86940277276491	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGAGGTAAAGGCTTTC	NA	False	NA	NA	False	TTTAAA	-18	NA	38955546	38909502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937147_38937608_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955436
ENSMUSG00000026754.17_1	chr2	-	4498	23	FSM	ENSMUSG00000026754.17	ENSMUST00000039165.15	4869	23	21	350	21	-2	multi-exon	FALSE	canonical	3	9	junction_22	11.0304799353113	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTACAGTGAGTTTTACTT	NA	False	NA	NA	False	ATTAAA	-15	NA	38955532	38906516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_38908502_38909001_38909089_38909494_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937147_38937608_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955392
ENSMUSG00000026754.17_12	chr2	-	348	1	ISM	ENSMUSG00000026754.17	ENSMUST00000039165.15	4869	23	47541	1498	406	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAGAGCTTCAAGTCT	NA	False	NA	NA	False	TATAAA	-16	NA	38908012	38907664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_38907700_38908000
ENSMUSG00000026754.17_2	chr2	-	4461	23	NIC	ENSMUSG00000026754.17	novel	4869	23	NA	NA	7	-9	intron_retention	FALSE	canonical	3	23	junction_1	8.80974291610907	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGCAACTACAGTGAGT	NA	False	NA	NA	False	ATTAAA	-8	NA	38955546	38906523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_38908502_38909001_38909089_38909494_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937147_38937608_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955436
ENSMUSG00000026754.17_24	chr2	-	3736	21	NIC	ENSMUSG00000026754.17	novel	4869	23	NA	NA	-21	-8	intron_retention	FALSE	canonical	3	9	junction_20	10.6648956863159	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCCAGCTCTGGCCAG	NA	False	NA	NA	False	ATTAAA	-45	NA	38955521	38908173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937147_38937608_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955392
ENSMUSG00000026754.17_4	chr2	-	4899	22	NIC	ENSMUSG00000026754.17	novel	4869	23	NA	NA	-5	8	intron_retention	FALSE	canonical	3	23	junction_1	8.93437906357799	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTACTTGATAAAGCTC	NA	False	NA	NA	False	ATTAAA	-25	NA	38955505	38906506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_38908502_38909001_38909089_38909494_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955436
ENSMUSG00000026755.15_0	chr2	+	1000	4	FSM	ENSMUSG00000026755.15	ENSMUST00000112862.7	1339	4	51	288	-14	196	multi-exon	FALSE	canonical	0	0	junction_1	449.53704580997	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCATCGCGGTGTGTTCTC	NA	False	NA	18	True	AATAAA	-20	NA	38898138	38905601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_38898357_38903126_38903200_38903734_38903912_38905069
ENSMUSG00000026755.15_4	chr2	+	995	4	NNC	ENSMUSG00000026755.15	novel	752	4	NA	NA	-10	196	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	449.53704580997	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCATCGCGGTGTGTTCTC	NA	False	NA	18	True	AATAAA	-20	NA	38898142	38905601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_38898358_38903128_38903200_38903734_38903912_38905069
ENSMUSG00000026761.13_2	chr2	-	1640	14	FSM	ENSMUSG00000026761.13	ENSMUST00000028098.11	4066	14	43	2383	-1	109	multi-exon	FALSE	canonical	3	352	junction_6	44.7134201423734	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGCATGGTCCATAAAATGA	NA	False	NA	-40	True	AATAAA	-14	NA	48839245	48795218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ENSMUSG00000026761.13_30	chr2	-	1592	14	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	0	109	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	120.796175338176	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGCATGGTCCATAAAATGA	NA	False	NA	-40	True	AATAAA	-14	NA	48839246	48795218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800258_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ENSMUSG00000026761.13_70	chr2	-	2130	10	FSM	ENSMUSG00000026761.13	ENSMUST00000141441.8	2133	10	-4	7	3	-7	multi-exon	FALSE	canonical	3	352	junction_2	49.1515670473473	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAACATTTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-8	NA	48839250	48801422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ENSMUSG00000026761.13_8	chr2	-	1601	14	FSM	ENSMUSG00000026761.13	ENSMUST00000154784.8	1477	14	-2	-122	-1	122	multi-exon	FALSE	canonical	3	68	junction_4	114.388107132055	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGATTTGATACTCTTT	NA	False	NA	-27	True	AATAAA	-27	NA	48839245	48795205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800255_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ENSMUSG00000026764.16_0	chr2	+	3613	17	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	8	34341	8	4853	5prime_fragment	FALSE	canonical	3	15	junction_6	6.86021136700612	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTAGGATGGATGATGT	NA	False	NA	NA	False	AATAAA	-13	NA	49509317	49630449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49509800_49561763_49561855_49570176_49570251_49578664_49578770_49583705_49583755_49584011_49584068_49584779_49584868_49587991_49588117_49590512_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094
ENSMUSG00000026764.16_1	chr2	+	1661	11	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	-18	63748	-18	-19221	5prime_fragment	TRUE	canonical	3	15	junction_6	6.56962708226274	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTGCCCCAGCTCAT	NA	False	NA	NA	False	ACTAAA	-16	NA	49509291	49601042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49509800_49561763_49561855_49570176_49570251_49578664_49578770_49583705_49583755_49584011_49584068_49584779_49584868_49587991_49588117_49590512_49590618_49590968_49591118_49600731
ENSMUSG00000026764.16_13	chr2	+	2425	1	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	153055	1	20163	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTCTGGTGTCCTTATT	NA	False	NA	16	True	AATAAA	-17	NA	49662364	49664789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49662400_49664800
ENSMUSG00000026764.16_3	chr2	+	6860	26	FSM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	-6	2	-6	-2	multi-exon	FALSE	canonical	3	10	junction_25	6.95056832208705	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGTCTGGTGTCCTTAT	NA	False	NA	15	True	AATAAA	-16	NA	49509303	49664788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_49509800_49561763_49561855_49570176_49570251_49578664_49578770_49583705_49583755_49584011_49584068_49584779_49584868_49587991_49588117_49590512_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094_49629213_49631344_49631422_49631950_49632061_49634376_49634479_49634697_49634759_49639310_49639383_49642260_49642366_49647350_49647568_49648821_49648935_49661175
ENSMUSG00000026764.16_5	chr2	+	3241	25	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	11	15845	11	25	5prime_fragment	FALSE	canonical	3	12	junction_19	6.58702428178984	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGGGGTATTTTCTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	49509320	49648945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49509800_49561763_49561855_49570176_49570251_49578664_49578770_49583705_49583755_49584011_49584068_49584779_49584868_49587991_49588117_49590512_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094_49629213_49631344_49631422_49631950_49632061_49634376_49634479_49634697_49634759_49639310_49639383_49642260_49642366_49647350_49647568_49648821
ENSMUSG00000026764.16_6	chr2	+	3281	23	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	-8	22063	-8	-4672	5prime_fragment	FALSE	canonical	3	12	junction_19	6.72435440386364	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAACAAAAACAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	49509301	49642727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49509800_49561763_49561855_49570176_49570251_49578664_49578770_49583705_49583755_49584011_49584068_49584779_49584868_49587991_49588117_49590512_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094_49629213_49631344_49631422_49631950_49632061_49634376_49634479_49634697_49634759_49639310_49639383_49642260
ENSMUSG00000026764.16_7	chr2	+	5905	18	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	81075	1	-206	-1	3prime_fragment	FALSE	canonical	3	10	junction_17	7.40616034613513	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTCTGGTGTCCTTATT	NA	False	NA	16	True	AATAAA	-17	NA	49590384	49664789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094_49629213_49631344_49631422_49631950_49632061_49634376_49634479_49634697_49634759_49639310_49639383_49642260_49642366_49647350_49647568_49648821_49648935_49661175
ENSMUSG00000026764.16_9	chr2	+	2660	9	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	81086	34341	-195	4853	internal_fragment	FALSE	canonical	3	18	junction_8	5.02493781056044	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTAGGATGGATGATGT	NA	False	NA	NA	False	AATAAA	-13	NA	49590395	49630449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094
ENSMUSG00000026766.17_0	chr2	-	1309	8	FSM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	28	5	-2	-5	multi-exon	FALSE	canonical	3	465	junction_7	76.2190720146573	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGGCTTGTGTTTTTTA	NA	False	NA	-5	True	AATAAA	-15	NA	50186701	50169897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186654
ENSMUSG00000026766.17_3	chr2	-	1638	7	ISM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	32	5	2	-5	intron_retention	FALSE	canonical	3	533	junction_6	61.03664655125	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGGCTTGTGTTTTTTA	NA	False	NA	-5	True	AATAAA	-15	NA	50186697	50169897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263
ENSMUSG00000026766.17_4	chr2	-	1273	8	NIC	ENSMUSG00000026766.17	novel	1351	9	NA	NA	11	-3	combination_of_known_junctions	FALSE	canonical	3	58	junction_6	203.005881085012	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGCTTGTGTTTTTTATT	NA	False	NA	-3	True	AATAAA	-17	NA	50186718	50169895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182911_50186263_50186322_50186654
ENSMUSG00000026766.17_5	chr2	-	1597	7	ISM	ENSMUSG00000026766.17	ENSMUST00000134480.8	803	8	3	-464	-3	-5	intron_retention	FALSE	canonical	3	69	junction_6	213.816445163187	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGGCTTGTGTTTTTTA	NA	False	NA	-5	True	AATAAA	-15	NA	50186696	50169897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182926_50186263
ENSMUSG00000026766.17_9	chr2	-	1270	8	FSM	ENSMUSG00000026766.17	ENSMUST00000134480.8	803	8	-3	-464	-3	-5	multi-exon	FALSE	canonical	3	69	junction_6	199.415574689068	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGGCTTGTGTTTTTTA	NA	False	NA	-5	True	AATAAA	-15	NA	50186702	50169897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182926_50186263_50186322_50186654
ENSMUSG00000026767.13_0	chr2	-	2050	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	37	257	-2	112	multi-exon	FALSE	canonical	3	102	junction_11	25.5990473355904	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATGTGGGAACTTCTAT	NA	False	NA	-2	True	AATAAA	-23	NA	12424244	12352330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
ENSMUSG00000026767.13_1	chr2	-	1389	8	NIC	ENSMUSG00000026767.13	novel	1843	10	NA	NA	-3	104	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	51.1843407175855	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGCTACTATGTGGGA	NA	False	NA	-10	True	AATAAA	-15	NA	12424224	12352338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
ENSMUSG00000026768.11_0	chr2	-	5817	30	FSM	ENSMUSG00000026768.11	ENSMUST00000028106.11	5812	30	-17	12	-17	-12	multi-exon	FALSE	canonical	0	0	junction_1	1.31577820885096	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACAGAAAATCGTGTTT	NA	False	NA	NA	False	AATAAA	-11	NA	12306750	12111454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_12114013_12115785_12115909_12124757_12124860_12137249_12137364_12145188_12145318_12160182_12160342_12165132_12165239_12178963_12179045_12183454_12183535_12187469_12187563_12194283_12194432_12195981_12196050_12196516_12196655_12198222_12198378_12199189_12199246_12204885_12204994_12209541_12209588_12234860_12235053_12237514_12237721_12247221_12247275_12249956_12250014_12252320_12252365_12254891_12254937_12258263_12258390_12260773_12260820_12261979_12262042_12266868_12266993_12270043_12270145_12305648_12305783_12306387
ENSMUSG00000026771.15_1	chr2	-	3159	1	ISM	ENSMUSG00000026771.15	ENSMUST00000132484.7	6595	11	62724	2	5843	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAATTTTCTTGCTTGGA	NA	False	NA	-4	True	AATAAA	-20	NA	23399392	23396233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_23396200_23399400
ENSMUSG00000026771.15_4	chr2	-	6578	12	NIC	ENSMUSG00000026771.15	novel	1516	12	NA	NA	13	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	14.5431816405973	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTAATTTTCTTGCTTG	NA	False	NA	-6	True	AATAAA	-18	NA	23462077	23396235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_23401473_23405016_23405071_23405159_23405303_23407840_23407964_23427339_23427396_23427472_23427651_23431530_23431628_23433208_23433337_23434757_23434839_23435164_23435287_23435455_23435592_23461854
ENSMUSG00000026771.15_5	chr2	-	2825	12	FSM	ENSMUSG00000026771.15	ENSMUST00000132827.8	1516	12	-98	-1211	2	613	multi-exon	FALSE	canonical	3	30	junction_7	7.08391263228297	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAGCTATTAGTTGATC	NA	False	NA	NA	False	AATAAA	-10	NA	23462088	23400070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_23401473_23405016_23405071_23405159_23405303_23407840_23407964_23427339_23427396_23427472_23427651_23431530_23431628_23433208_23433337_23434757_23434910_23435164_23435287_23435455_23435592_23461854
ENSMUSG00000026771.15_8	chr2	-	2734	11	FSM	ENSMUSG00000026771.15	ENSMUST00000132484.7	6595	11	27	3834	1	618	multi-exon	FALSE	canonical	3	29	junction_6	7.44580418759451	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTATTAGTTGATCACTCA	NA	False	NA	NA	False	AATAAA	-15	NA	23462089	23400065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_23401473_23405016_23405071_23405159_23405303_23407840_23407964_23427339_23427396_23427472_23427651_23433208_23433337_23434757_23434910_23435164_23435287_23435455_23435592_23461854
ENSMUSG00000026773.20_1	chr2	-	4571	15	FSM	ENSMUSG00000026773.20	ENSMUST00000114846.9	4634	15	59	4	-25	-2	multi-exon	FALSE	canonical	3	18	junction_2	9.41693004267163	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACACCTGCGGGACTCGCT	6367	False	NA	-9	True	AATAAA	-13	NA	11506853	11476640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11506435
ENSMUSG00000026773.20_11	chr2	-	4535	16	NIC	ENSMUSG00000026773.20	novel	4756	16	NA	NA	-44	-2	intron_retention	FALSE	canonical	2	5	junction_2	12.4988888395018	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACACCTGCGGGACTCGCT	NA	False	NA	-9	True	AATAAA	-13	NA	11558932	11476640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_11479355_11485008_11485183_11486057_11486145_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11558637
ENSMUSG00000026773.20_3	chr2	-	4401	15	FSM	ENSMUSG00000026773.20	ENSMUST00000192949.6	4801	15	7	393	7	0	multi-exon	FALSE	canonical	3	18	junction_2	9.7969174660571	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGACTCGCTTCTC	NA	False	NA	-5	True	AATAAA	-17	NA	11558881	11476636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11558637
ENSMUSG00000026773.20_4	chr2	-	1354	1	ISM	ENSMUSG00000026773.20	ENSMUST00000192949.6	4801	15	80898	393	8932	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGACTCGCTTCTC	6791	False	NA	-5	True	AATAAA	-17	NA	11477990	11476636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_11476600_11478000
ENSMUSG00000026775.10_0	chr2	+	2986	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	151	1570	2	-1570	multi-exon	TRUE	canonical	3	665	junction_5	65.7463325738674	1231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTAAACAAGTAACATTAT	7224	False	NA	87	True	NA	NA	NA	23046531	23087702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
ENSMUSG00000026779.7_17	chr2	-	3083	5	ISM	ENSMUSG00000026779.7	ENSMUST00000028119.7	5590	12	22703	956	22576	-956	3prime_fragment	FALSE	canonical	3	112	junction_2	10.3772587902586	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGATTATTTATCCTACA	2756	False	NA	NA	False	AAAAAG	-15	NA	23023333	23006573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636
ENSMUSG00000026779.7_2	chr2	-	4500	12	FSM	ENSMUSG00000026779.7	ENSMUST00000028119.7	5590	12	118	972	-9	-972	multi-exon	TRUE	canonical	3	112	junction_2	17.5310821963508	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTACTTCTCCTTTCAA	NA	False	NA	NA	False	TTTAAA	-8	NA	23045918	23006589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
ENSMUSG00000026779.7_20	chr2	-	3485	1	Genic_Genomic	ENSMUSG00000026779.7	novel	NA	NA	NA	NA	37958	1151	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCATTAAAAAAATACCATA	NA	False	NA	NA	False	AATAAA	-12	NA	23007951	23004466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_23004500_23008000
ENSMUSG00000026779.7_31	chr2	-	1212	7	FSM	ENSMUSG00000026779.7	ENSMUST00000136207.2	1201	7	-9	-2	-9	2	multi-exon	FALSE	canonical	3	131	junction_4	13.2759180473518	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTTGTGATACTGGTC	NA	False	NA	NA	False	TATAAA	-18	NA	23045918	23026693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
ENSMUSG00000026781.18_0	chr2	+	3561	13	FSM	ENSMUSG00000026781.18	ENSMUST00000028121.15	3630	13	59	10	-8	-7	multi-exon	FALSE	canonical	3	36	junction_1	26.6993289553627	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGAAATGCTAACTGT	NA	False	NA	NA	False	AATAAA	-10	NA	22958238	23004515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_22958299_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989573_22989777_23000256_23000299_23000665_23000776_23002516
ENSMUSG00000026781.18_1	chr2	+	3559	13	FSM	ENSMUSG00000026781.18	ENSMUST00000227809.2	1986	13	26	-1599	-8	-6	multi-exon	FALSE	canonical	3	36	junction_1	25.6850583457041	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGAAATGCTAACTGTA	NA	False	NA	NA	False	AATAAA	-11	NA	22958238	23004516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_22958299_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
ENSMUSG00000026781.18_17	chr2	+	3594	12	ISM	ENSMUSG00000026781.18	ENSMUST00000114526.9	3725	13	287	10	28	-7	3prime_fragment	FALSE	canonical	3	49	junction_8	20.3972936140278	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGAAATGCTAACTGT	NA	False	NA	NA	False	AATAAA	-10	NA	22959366	23004515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
ENSMUSG00000026781.18_22	chr2	+	1652	1	ISM	ENSMUSG00000026781.18	ENSMUST00000227663.2	4566	14	44685	915	13862	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGAAATGCTAACTGT	NA	False	NA	NA	False	AATAAA	-10	NA	23002863	23004515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_23002900_23004500
ENSMUSG00000026781.18_5	chr2	+	3743	14	NIC	ENSMUSG00000026781.18	novel	4566	14	NA	NA	-7	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	39.0328340013573	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGAAATGCTAACTGT	NA	False	NA	NA	False	AATAAA	-10	NA	22958239	23004515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_22958299_22958891_22959078_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
ENSMUSG00000026781.18_8	chr2	+	3632	13	FSM	ENSMUSG00000026781.18	ENSMUST00000114529.10	3630	13	87	-89	83	-6	multi-exon	FALSE	canonical	3	40	junction_1	26.0302975182553	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGAAATGCTAACTGTA	NA	False	NA	NA	False	AATAAA	-11	NA	22959166	23004516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_22959297_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989573_22989777_23000256_23000299_23000665_23000776_23002516
ENSMUSG00000026781.18_9	chr2	+	3700	13	FSM	ENSMUSG00000026781.18	ENSMUST00000114526.9	3725	13	15	10	11	-7	multi-exon	FALSE	canonical	3	40	junction_1	24.981103969912	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGAAATGCTAACTGT	NA	False	NA	NA	False	AATAAA	-10	NA	22959094	23004515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_22959297_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
ENSMUSG00000026782.16_0	chr1	+	5717	9	NNC	ENSMUSG00000026782.16	novel	5768	9	NA	NA	-35	-7	intron_retention	FALSE	canonical	3	27	junction_5	45.7295036054405	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATATTGCAGTGTCTTG	NA	False	NA	8	True	AATAAA	-10	NA	60448818	60520310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487239_60487362_60492762_60492922_60509824_60509999_60515898
ENSMUSG00000026782.16_2	chr1	+	5715	9	FSM	ENSMUSG00000026782.16	ENSMUST00000052332.15	5768	9	46	7	-30	-7	multi-exon	FALSE	canonical	3	110	junction_7	24.0559244262198	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATATTGCAGTGTCTTG	NA	False	NA	8	True	AATAAA	-10	NA	60448823	60520310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487236_60487362_60492762_60492922_60509824_60509999_60515898
ENSMUSG00000026782.16_27	chr1	+	2941	1	ISM	ENSMUSG00000026782.16	ENSMUST00000052332.15	5768	9	68596	3	39273	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGCAGTGTCTTGTAGA	NA	False	NA	12	True	AATAAA	-14	NA	60517373	60520314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_60517400_60520300
ENSMUSG00000026782.16_4	chr1	+	5820	10	FSM	ENSMUSG00000026782.16	ENSMUST00000187709.7	1671	10	-156	-3993	28	-7	multi-exon	TRUE	canonical	3	29	junction_7	51.9553464495364	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATATTGCAGTGTCTTG	NA	False	NA	8	True	AATAAA	-10	NA	60448805	60520310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487236_60487362_60492762_60492922_60503687_60503775_60509824_60509999_60515898
ENSMUSG00000026784.15_0	chr2	+	1559	11	FSM	ENSMUSG00000026784.15	ENSMUST00000053729.14	1642	11	74	9	1	2	multi-exon	FALSE	canonical	3	239	junction_4	19.641792178923	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCAAGTGGTTTGTCT	5682	False	NA	10	True	AATAAA	-12	NA	22785607	22830269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ENSMUSG00000026784.15_5	chr2	+	1446	10	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	-2	0	intron_retention	FALSE	canonical	3	31	junction_8	77.9635875755748	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAATTCAAGTGGTTTGT	5679	False	NA	8	True	AATAAA	-10	NA	22785604	22830267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22825570_22825652_22829834
ENSMUSG00000026784.15_6	chr2	+	1602	12	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	-3	0	intron_retention	FALSE	canonical	3	18	junction_1	98.1149604012836	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAATTCAAGTGGTTTGT	5702	False	NA	8	True	AATAAA	-10	NA	22785627	22830267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_22785775_22789930_22789996_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ENSMUSG00000026785.15_1	chr2	+	2972	22	NIC	ENSMUSG00000026785.15	novel	3460	21	NA	NA	-15	0	combination_of_known_junctions	TRUE	canonical	3	77	junction_7	19.7860437769826	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGCCAGGGGTTGTGT	1362	False	NA	15	True	AATAAA	-17	NA	29967739	29981025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29967812_29969545_29969775_29969937_29970084_29970586_29970699_29970767_29970896_29971064_29971249_29972827_29972975_29973052_29973163_29973250_29973395_29974702_29974779_29974861_29975025_29975194_29975292_29975371_29975440_29976448_29976513_29976643_29976736_29977036_29977214_29978531_29978595_29978707_29978785_29979850_29979994_29980079_29980188_29980342_29980424_29980534
ENSMUSG00000026785.15_8	chr2	+	3465	21	FSM	ENSMUSG00000026785.15	ENSMUST00000148650.8	3460	21	-9	4	-9	-4	multi-exon	FALSE	canonical	3	77	junction_6	20.1955440629858	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTAGCCAGGCCAGGGGTT	1368	False	NA	11	True	AATAAA	-13	NA	29967745	29981021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29967812_29969545_29969775_29969937_29970699_29970767_29970896_29971064_29971249_29972827_29972975_29973052_29973163_29973250_29973395_29974702_29974779_29974861_29975025_29975194_29975292_29975371_29975440_29976448_29976513_29976643_29976736_29977036_29977214_29978531_29978595_29978707_29978785_29979850_29979994_29980079_29980188_29980342_29980424_29980534
ENSMUSG00000026787.4_0	chr2	+	4566	11	ISM	ENSMUSG00000026787.4	ENSMUST00000028123.4	5744	16	7772	80	6673	-80	3prime_fragment	FALSE	canonical	0	0	junction_1	0.66332495807108	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAATATAAACTTGTGTA	NA	False	NA	-65	True	AATAAA	-28	NA	22519988	22583806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_22520073_22524941_22525058_22540240_22540321_22556246_22556302_22558258_22558376_22559712_22559778_22563955_22564035_22571299_22571450_22574970_22575079_22575391_22575482_22580184
ENSMUSG00000026788.14_1	chr2	-	4947	2	NIC	ENSMUSG00000026788.14	novel	4998	3	NA	NA	11	-6	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAAGTTGTGTTGTTTTC	NA	False	NA	-7	True	AATAAA	-19	NA	33358560	33340304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_33345136_33358444
ENSMUSG00000026788.14_2	chr2	-	5007	3	FSM	ENSMUSG00000026788.14	ENSMUST00000028125.12	4998	3	-14	5	13	-5	multi-exon	TRUE	canonical	3	44	junction_1	8.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGTTGTGTTGTTTTCA	NA	False	NA	-6	True	AATAAA	-20	NA	33358558	33340303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_33345136_33354925_33354987_33358444
ENSMUSG00000026788.14_3	chr2	-	3258	1	ISM	ENSMUSG00000026788.14	ENSMUST00000095035.3	4925	2	8804	5	8804	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGTTGTGTTGTTTTCA	NA	False	NA	-6	True	AATAAA	-20	NA	33343561	33340303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_33340300_33343600
ENSMUSG00000026788.14_5	chr2	-	5070	3	FSM	ENSMUSG00000026788.14	ENSMUST00000126442.2	487	3	13	-4596	13	-5	multi-exon	FALSE	canonical	3	37	junction_2	3.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGTTGTGTTGTTTTCA	NA	False	NA	-6	True	AATAAA	-20	NA	33358558	33340303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_33345136_33354925_33355050_33358444
ENSMUSG00000026788.14_6	chr2	-	5092	4	FSM	ENSMUSG00000026788.14	ENSMUST00000113156.2	1828	4	-34	-3230	-7	-5	multi-exon	FALSE	canonical	3	37	junction_1	10.6770782520313	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGTTGTGTTGTTTTCA	NA	False	NA	-6	True	AATAAA	-20	NA	33358551	33340303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_33345136_33352277_33352370_33354925_33354987_33358444
ENSMUSG00000026788.14_8	chr2	-	5152	4	NIC	ENSMUSG00000026788.14	novel	1828	4	NA	NA	-5	-6	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	1.4142135623731	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAAGTTGTGTTGTTTTC	NA	False	NA	-7	True	AATAAA	-19	NA	33358549	33340304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_33345136_33352277_33352370_33354925_33355050_33358444
ENSMUSG00000026790.20_16	chr2	+	3802	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113756.8	3826	21	21	3	1	-3	multi-exon	FALSE	canonical	3	577	junction_4	191.01803579767	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGTCAGACTCCTTTGA	7224	False	NA	10	True	AATAAA	-10	NA	29779827	29821754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ENSMUSG00000026790.20_17	chr2	+	3748	21	NIC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	193.045616370846	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGTCAGACTCCTTTGA	7221	False	NA	10	True	AATAAA	-10	NA	29779824	29821754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ENSMUSG00000026790.20_18	chr2	+	2304	17	FSM	ENSMUSG00000026790.20	ENSMUST00000113755.8	2305	17	-2	3	1	0	multi-exon	FALSE	canonical	3	577	junction_4	168.994082736645	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTGCGTGTTGCACAA	7224	False	NA	10	True	AATAAA	-14	NA	29779827	29812548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ENSMUSG00000026790.20_21	chr2	+	2247	17	NIC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	172.1394783308	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTGCGTGTTGCACAA	7224	False	NA	10	True	AATAAA	-14	NA	29779827	29812548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ENSMUSG00000026790.20_22	chr2	+	3592	20	NIC	ENSMUSG00000026790.20	novel	3082	21	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	269.578043114865	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGTCAGACTCCTTTGA	7223	False	NA	10	True	AATAAA	-10	NA	29779826	29821754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ENSMUSG00000026790.20_25	chr2	+	3648	20	NIC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	268.155761574078	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGTCAGACTCCTTTGA	7224	False	NA	10	True	AATAAA	-10	NA	29779827	29821754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ENSMUSG00000026791.15_1	chr2	-	2080	10	FSM	ENSMUSG00000026791.15	ENSMUST00000028129.13	2108	10	30	-2	16	2	multi-exon	FALSE	canonical	3	167	junction_4	8.32666399786453	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTCAGTGGAGCCAGAAG	3980	False	NA	-11	True	AATAAA	-17	NA	32872064	32862999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32863745_32864849_32864996_32865325_32865497_32865931_32866041_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871580_32871732_32871896_32871969
ENSMUSG00000026791.15_2	chr2	-	2781	7	NIC	ENSMUSG00000026791.15	novel	1339	9	NA	NA	17	8	intron_retention	FALSE	canonical	3	169	junction_5	8.47381587925744	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGAGCCAGAAGTCTTTT	3981	False	NA	-5	True	AATAAA	-23	NA	32872063	32862993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32863745_32864849_32864996_32865325_32866293_32866872_32867073_32870013_32870114_32871372_32871896_32871969
ENSMUSG00000026791.15_4	chr2	-	2228	9	NIC	ENSMUSG00000026791.15	novel	2108	10	NA	NA	21	2	intron_retention	FALSE	canonical	3	167	junction_4	8.8175960442742	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTCAGTGGAGCCAGAAG	3985	False	NA	-11	True	AATAAA	-17	NA	32872059	32862999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32863745_32864849_32864996_32865325_32865497_32865931_32866041_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871896_32871969
ENSMUSG00000026792.17_15	chr2	-	951	1	ISM	ENSMUSG00000026792.17	ENSMUST00000028132.14	3981	25	35081	8	12625	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCTTACACAGTTTGCA	8774	False	NA	-9	True	AATAAA	-17	NA	32816186	32815235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_32815200_32816200
ENSMUSG00000026792.17_17	chr2	-	2477	9	ISM	ENSMUSG00000026792.17	ENSMUST00000028132.14	3981	25	22371	8	-85	-4	3prime_fragment	FALSE	canonical	3	25	junction_4	2.8613807855649	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCTTACACAGTTTGCA	511	False	NA	-9	True	AATAAA	-17	NA	32828896	32815235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808
ENSMUSG00000026792.17_2	chr2	-	4026	26	FSM	ENSMUSG00000026792.17	ENSMUST00000113200.8	4030	26	0	4	0	-4	multi-exon	FALSE	canonical	3	22	junction_16	3.74165738677394	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCTTACACAGTTTGCA	NA	False	NA	-9	True	AATAAA	-17	NA	32851626	32815235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808_32828897_32830252_32830353_32831814_32831886_32834716_32834762_32835453_32835594_32835862_32835986_32836103_32836134_32837802_32837934_32841104_32841196_32843375_32843498_32844213_32844299_32845192_32845262_32846486_32846565_32847260_32847306_32848169_32848227_32849528_32849626_32851055_32851268_32851573
ENSMUSG00000026792.17_24	chr2	-	1912	3	ISM	ENSMUSG00000026792.17	ENSMUST00000028132.14	3981	25	32523	1	10067	-1	3prime_fragment	FALSE	canonical	3	27	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACAGTTTGCATAGATTC	6216	False	NA	-2	True	AATAAA	-24	NA	32818744	32815228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_32816914_32817996_32818143_32818663
ENSMUSG00000026792.17_27	chr2	-	3955	26	NIC	ENSMUSG00000026792.17	novel	4030	26	NA	NA	-1	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	8.1338797630651	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCTTACACAGTTTGCA	NA	False	NA	-9	True	AATAAA	-17	NA	32851627	32815235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808_32828897_32830247_32830353_32831814_32831886_32834716_32834762_32835453_32835594_32835862_32835986_32836103_32836134_32837802_32837934_32841104_32841196_32843375_32843498_32844213_32844299_32845192_32845262_32846486_32846565_32847260_32847306_32848169_32848227_32849528_32849626_32851055_32851191_32851573
ENSMUSG00000026792.17_3	chr2	-	3274	18	ISM	ENSMUSG00000026792.17	ENSMUST00000028132.14	3981	25	7834	0	6485	0	3prime_fragment	TRUE	canonical	3	22	junction_16	3.05089470115057	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGTTTGCATAGATTCT	3847	False	NA	-1	True	AATAAA	-25	NA	32843433	32815227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808_32828897_32830252_32830353_32831814_32831886_32834716_32834762_32835453_32835594_32835862_32835986_32836103_32836134_32837802_32837934_32841104_32841196_32843375
ENSMUSG00000026792.17_34	chr2	-	4029	26	NIC	ENSMUSG00000026792.17	novel	4030	26	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	3	3	junction_25	6.16389487256231	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGAAGCTTACACAGTTT	NA	False	NA	-12	True	AATAAA	-14	NA	32851610	32815238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808_32828897_32830252_32830353_32831814_32831886_32834716_32834762_32835453_32835594_32835862_32835986_32836103_32836134_32837802_32837934_32841104_32841196_32843375_32843498_32844213_32844299_32845192_32845262_32846486_32846565_32847260_32847306_32848169_32848227_32849528_32849626_32851055_32851268_32851551
ENSMUSG00000026792.17_6	chr2	-	3968	26	NIC	ENSMUSG00000026792.17	novel	4030	26	NA	NA	-17	-2	combination_of_known_splicesites	FALSE	canonical	1	3	junction_25	6.16389487256231	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTACACAGTTTGCATA	NA	False	NA	-7	True	AATAAA	-19	NA	32851643	32815233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808_32828897_32830252_32830353_32831814_32831886_32834716_32834762_32835453_32835594_32835862_32835986_32836103_32836134_32837802_32837934_32841104_32841196_32843375_32843498_32844213_32844299_32845192_32845262_32846486_32846565_32847260_32847306_32848169_32848227_32849528_32849626_32851055_32851191_32851573
ENSMUSG00000026792.17_7	chr2	-	4049	26	NIC	ENSMUSG00000026792.17	novel	4030	26	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_24	7.82304288624318	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGTTTGCATAGATTCT	NA	False	NA	-1	True	AATAAA	-25	NA	32851610	32815227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808_32828897_32830252_32830353_32831814_32831886_32834716_32834762_32835453_32835594_32835862_32835986_32836103_32836134_32837802_32837934_32841104_32841196_32843375_32843498_32844213_32844299_32845192_32845262_32846486_32846565_32847260_32847306_32848169_32848227_32849528_32849626_32850947_32851191_32851573
ENSMUSG00000026796.17_0	chr2	+	3637	14	FSM	ENSMUSG00000026796.17	ENSMUST00000028135.15	3714	14	69	8	69	-8	multi-exon	TRUE	canonical	3	292	junction_12	30.0169577319103	931	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTCATTTCCTCATGTG	8926	False	NA	11	True	AATAAA	-11	NA	32766194	32815258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32766417_32795780_32795912_32799860_32799990_32801352_32801459_32802431_32802600_32809004_32809121_32809507_32809613_32809714_32809878_32810964_32811153_32812080_32812237_32812569_32812687_32812867_32812976_32813058_32813171_32813442
ENSMUSG00000026797.17_0	chr2	-	3556	19	FSM	ENSMUSG00000026797.17	ENSMUST00000050000.16	3892	19	-26	362	-26	-3	multi-exon	FALSE	canonical	3	22	junction_3	6.44827472379863	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTCATGGTGCCTGGGCC	5123	False	NA	-26	True	AATAAA	-12	NA	32737283	32677975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32679650_32686027_32686183_32688116_32688203_32690591_32690694_32691831_32691942_32692765_32692905_32696080_32696162_32696732_32696799_32698013_32698075_32699112_32699221_32701116_32701248_32702032_32702118_32704890_32705040_32707297_32707402_32708438_32708518_32709845_32709923_32711846_32711929_32713547_32713598_32737066
ENSMUSG00000026797.17_1	chr2	-	1654	1	ISM	ENSMUSG00000026797.17	ENSMUST00000050000.16	3892	19	57630	360	27575	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCATGGTGCCTGGGCCCA	NA	False	NA	-24	True	AATAAA	-14	NA	32679627	32677973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_32678000_32679600
ENSMUSG00000026797.17_8	chr2	-	3530	20	FSM	ENSMUSG00000026797.17	ENSMUST00000077458.7	3616	20	-61	147	-18	-147	multi-exon	FALSE	canonical	2	2	junction_1	11.5751189843295	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATATTTAAAAAAAAGCTAG	5131	False	NA	NA	False	TATAAA	-15	NA	32737275	32678119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32679650_32684599_32684726_32686027_32686183_32688116_32688203_32690591_32690694_32691831_32691942_32692765_32692905_32696080_32696162_32696732_32696799_32698013_32698075_32699112_32699221_32701116_32701248_32702032_32702118_32704890_32705040_32707297_32707402_32708438_32708518_32709845_32709923_32711846_32711929_32713547_32713598_32737066
ENSMUSG00000026798.11_0	chr2	+	1240	7	FSM	ENSMUSG00000026798.11	ENSMUST00000028137.10	1991	7	12	739	0	18	multi-exon	FALSE	canonical	3	105	junction_3	15.3884877605162	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTAGCTCCCTTTGCCT	NA	False	NA	45	True	AATAAA	-35	NA	29678282	29687016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29678370_29678448_29678581_29679914_29680012_29680468_29680572_29685392_29685523_29685947_29686042_29686419
ENSMUSG00000026798.11_2	chr2	+	1236	7	NIC	ENSMUSG00000026798.11	novel	1991	7	NA	NA	0	17	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	46.5608920304011	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTTAGCTCCCTTTGCC	NA	False	NA	44	True	AATAAA	-34	NA	29678282	29687015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29678370_29678448_29678581_29679914_29680012_29680468_29680572_29685395_29685523_29685947_29686042_29686419
ENSMUSG00000026798.11_3	chr2	+	2186	6	NIC	ENSMUSG00000026798.11	novel	1991	7	NA	NA	8	-210	intron_retention	FALSE	canonical	3	105	junction_3	16.8475517509222	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTAAAGTGATGGTTTG	NA	False	NA	NA	False	AATAAA	-6	NA	29678290	29687545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29678370_29678448_29678581_29679914_29680012_29680468_29680572_29685392_29686042_29686419
ENSMUSG00000026799.16_1	chr2	+	3176	5	ISM	ENSMUSG00000026799.16	ENSMUST00000028139.11	1254	8	-6	22004	-6	2241	5prime_fragment	FALSE	canonical	3	144	junction_3	13.5738719604982	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29236824	29392801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_29237060_29239857_29240003_29303399_29303531_29361304_29361399_29390230
ENSMUSG00000026799.16_2	chr2	+	1236	8	FSM	ENSMUSG00000026799.16	ENSMUST00000028139.11	1254	8	13	5	-1	-5	multi-exon	FALSE	canonical	3	144	junction_3	14.0393034305954	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAAGGCTCTGTGTTCTGC	NA	False	NA	27	True	AATAAA	-15	NA	29236843	29414800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29237060_29239857_29240003_29303399_29303531_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
ENSMUSG00000026803.18_0	chr2	+	3934	13	NNC	ENSMUSG00000026803.18	novel	4160	12	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	11.9745099644574	104	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAATGTGTGTGAAATG	NA	False	NA	14	True	AATAAA	-16	NA	28950279	28977661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_28950316_28954630_28955921_28957014_28957242_28959903_28960090_28961309_28961389_28963900_28964032_28964585_28964821_28969400_28969491_28971023_28971090_28973544_28973631_28974648_28974827_28976118_28976918_28977130
ENSMUSG00000026803.18_11	chr2	+	3735	12	NNC	ENSMUSG00000026803.18	novel	4160	12	NA	NA	4516	-7	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_5	9.26826987340577	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAATGTGTGTGAAATG	NA	False	NA	14	True	AATAAA	-16	NA	28954793	28977661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_28955921_28957014_28957242_28959903_28960090_28961309_28961389_28963900_28964032_28964585_28964821_28969400_28969491_28971023_28971090_28973544_28973631_28974648_28974827_28976118_28976918_28977130
ENSMUSG00000026806.16_0	chr2	+	2763	20	FSM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	154	354	154	-354	multi-exon	FALSE	canonical	3	96	junction_10	16.137738156191	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCTTAGTCCATATGTT	NA	False	NA	9	True	GATAAA	-18	NA	28730624	28795229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28730873_28734849_28735107_28735209_28735286_28736005_28736050_28737452_28737524_28738297_28738363_28744782_28744828_28746206_28746249_28747131_28747197_28748747_28748868_28748999_28749107_28749880_28750090_28750727_28750905_28753727_28753788_28764142_28764194_28765701_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
ENSMUSG00000026807.9_1	chr2	+	1561	13	FSM	ENSMUSG00000026807.9	ENSMUST00000074156.7	1567	13	0	6	0	-6	multi-exon	FALSE	canonical	0	0	junction_4	2.54405625374562	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCTGATAGCCTTCTTT	NA	False	NA	NA	False	AATAAA	-13	NA	28590175	28703171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28590287_28592700_28592786_28599938_28599989_28602286_28602401_28606428_28606498_28623818_28623901_28624385_28624458_28625514_28625716_28629544_28629677_28632671_28632762_28649953_28650096_28699671_28699753_28702839
ENSMUSG00000026809.16_0	chr2	-	670	5	FSM	ENSMUSG00000026809.16	ENSMUST00000102877.8	671	5	1	0	1	0	multi-exon	FALSE	canonical	3	6	junction_1	1.22474487139159	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGCTTGGTTTCCTGG	NA	False	NA	NA	False	AATAAA	-18	NA	28589662	28582091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_28582165_28582923_28583072_28583635_28583839_28585918_28586096_28589593
ENSMUSG00000026809.16_2	chr2	-	1424	4	FSM	ENSMUSG00000026809.16	ENSMUST00000144209.8	574	4	78	-928	2	0	multi-exon	FALSE	canonical	3	6	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGGCTTGGTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	28589661	28582095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_28583072_28583635_28583839_28585918_28586096_28589593
ENSMUSG00000026810.13_0	chr2	+	2405	2	ISM	ENSMUSG00000026810.13	ENSMUST00000140592.8	1412	3	16	-8	7	-8	intron_retention	FALSE	canonical	3	274	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTCTCTGCCATCC	4789	False	NA	15	True	AATAAA	-16	NA	32460885	32463583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32460925_32461217
ENSMUSG00000026810.13_1	chr2	+	842	4	FSM	ENSMUSG00000026810.13	ENSMUST00000028151.7	869	4	18	9	9	7	multi-exon	FALSE	canonical	3	274	junction_1	58.5965490072202	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGTCTCTCTGCCATC	4791	False	NA	14	True	AATAAA	-15	NA	32460887	32463582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32460925_32461217_32461308_32462308_32462412_32462970
ENSMUSG00000026810.13_2	chr2	+	2685	1	NIC	ENSMUSG00000026810.13	novel	869	4	NA	NA	19	7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGTCTCTCTGCCATC	4801	False	NA	14	True	AATAAA	-15	NA	32460897	32463582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32460900_32463600
ENSMUSG00000026810.13_4	chr2	+	1848	3	NIC	ENSMUSG00000026810.13	novel	869	4	NA	NA	4	7	intron_retention	FALSE	canonical	3	274	junction_1	59.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGTCTCTCTGCCATC	4786	False	NA	14	True	AATAAA	-15	NA	32460882	32463582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32460925_32461217_32462412_32462970
ENSMUSG00000026810.13_6	chr2	+	2112	2	FSM	ENSMUSG00000026810.13	ENSMUST00000150419.2	851	2	-1146	-115	34	-8	multi-exon	FALSE	canonical	3	393	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTCTCTGCCATCC	4816	False	NA	15	True	AATAAA	-16	NA	32460912	32463583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32462412_32462970
ENSMUSG00000026810.13_7	chr2	+	1104	3	FSM	ENSMUSG00000026810.13	ENSMUST00000128039.2	655	3	39	-488	39	6	multi-exon	FALSE	canonical	3	393	junction_2	5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTTTGTCTCTCTGCCAT	4821	False	NA	13	True	AATAAA	-14	NA	32460917	32463581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32461308_32462308_32462412_32462970
ENSMUSG00000026811.19_0	chr2	+	2334	3	FSM	ENSMUSG00000026811.19	ENSMUST00000126636.8	438	3	-48	-1848	-16	-2	multi-exon	FALSE	canonical	3	48	junction_1	25.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GTAAAAAAAAAAAAAAAAAA	3338	False	NA	NA	False	NA	NA	NA	32497006	32506829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32497124_32502235_32502416_32504792
ENSMUSG00000026811.19_1	chr2	+	2280	5	NNC	ENSMUSG00000026811.19	novel	2402	6	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	39.7264080933577	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3331	False	NA	5	True	AATAAA	-14	NA	32496999	32510816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_32497124_32502235_32502416_32504792_32505200_32508508_32508617_32509355
ENSMUSG00000026811.19_23	chr2	+	1189	1	ISM	ENSMUSG00000026811.19	ENSMUST00000113290.8	2402	6	12655	0	10573	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	NA	False	NA	5	True	AATAAA	-14	NA	32509627	32510816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32509600_32510800
ENSMUSG00000026811.19_24	chr2	+	1846	2	ISM	ENSMUSG00000026811.19	ENSMUST00000081879.12	2345	6	9760	0	9181	0	3prime_fragment	FALSE	canonical	3	96	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	NA	False	NA	5	True	AATAAA	-14	NA	32508235	32510816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32508617_32509351
ENSMUSG00000026811.19_4	chr2	+	2270	5	NIC	ENSMUSG00000026811.19	novel	2402	6	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	26.3569250862084	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3345	False	NA	5	True	AATAAA	-14	NA	32497013	32510816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32497124_32502235_32502416_32504792_32505200_32508508_32508617_32509351
ENSMUSG00000026811.19_5	chr2	+	2361	6	NIC	ENSMUSG00000026811.19	novel	2536	7	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_2	41.0482642751189	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3309	False	NA	5	True	AATAAA	-14	NA	32496977	32510816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32497124_32498053_32498109_32502235_32502416_32504792_32505200_32508508_32508617_32509351
ENSMUSG00000026811.19_6	chr2	+	2355	6	FSM	ENSMUSG00000026811.19	ENSMUST00000113290.8	2402	6	47	0	-3	0	multi-exon	FALSE	canonical	3	16	junction_1	35.6202189774291	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3351	False	NA	5	True	AATAAA	-14	NA	32497019	32510816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32497124_32499237_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509351
ENSMUSG00000026811.19_7	chr2	+	2422	7	FSM	ENSMUSG00000026811.19	ENSMUST00000095044.10	2394	7	-30	2	-15	0	multi-exon	FALSE	canonical	3	38	junction_2	28.6225435627234	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3339	False	NA	5	True	AATAAA	-14	NA	32497007	32510816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32497124_32498053_32498109_32499237_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509351
ENSMUSG00000026812.17_0	chr2	+	3971	23	FSM	ENSMUSG00000026812.17	ENSMUST00000028155.12	7674	23	14	3689	1	-1070	multi-exon	FALSE	canonical	3	21	junction_1	11.5017066645932	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTGGGTCCAATATGCC	3466	False	NA	28	True	NA	NA	NA	28531262	28577490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28531303_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562796_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568963_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
ENSMUSG00000026812.17_12	chr2	+	3961	23	FSM	ENSMUSG00000026812.17	ENSMUST00000113867.9	7682	23	28	3693	17	-1074	multi-exon	FALSE	canonical	2	11	junction_16	12.8165698535106	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCTTTGGGTCCAATA	3486	False	NA	24	True	NA	NA	NA	28531282	28577486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28531332_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562796_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568978_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
ENSMUSG00000026812.17_17	chr2	+	3666	22	ISM	ENSMUSG00000026812.17	ENSMUST00000113867.9	7682	23	10925	3940	-6399	-1321	3prime_fragment	FALSE	canonical	2	11	junction_15	12.6162620465497	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCACGGTCTAGGCTTCT	1903	False	NA	NA	False	NA	NA	NA	28542179	28577239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562796_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568978_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
ENSMUSG00000026812.17_19	chr2	+	3635	22	ISM	ENSMUSG00000026812.17	ENSMUST00000028155.12	7674	23	10931	3986	-6399	-1367	3prime_fragment	FALSE	canonical	3	30	junction_9	10.3964497690535	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGTGTTCATTTGCGTC	1903	False	NA	NA	False	NA	NA	NA	28542179	28577193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562796_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568963_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
ENSMUSG00000026812.17_2	chr2	+	3974	23	NIC	ENSMUSG00000026812.17	novel	7702	23	NA	NA	0	-1093	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	10.8204734012935	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAATATGAGGCCAAAT	3469	False	NA	5	True	NA	NA	NA	28531265	28577467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_28531332_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562796_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568963_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
ENSMUSG00000026812.17_3	chr2	+	3932	23	NIC	ENSMUSG00000026812.17	novel	7674	23	NA	NA	-2	-1097	combination_of_known_junctions	FALSE	canonical	2	11	junction_16	13.3695101500725	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGTGCAATATGAGGCC	3463	False	NA	1	True	NA	NA	NA	28531259	28577463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_28531303_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562796_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568978_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
ENSMUSG00000026812.17_33	chr2	+	1561	1	ISM	ENSMUSG00000026812.17	ENSMUST00000028155.12	7674	23	48370	0	17329	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCGCAGTGTTGATGGAG	NA	False	NA	8	True	AATAAA	-16	NA	28579618	28581179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_28579600_28581200
ENSMUSG00000026814.17_0	chr2	+	2859	15	FSM	ENSMUSG00000026814.17	ENSMUST00000009705.14	3422	15	20	543	-7	-3	multi-exon	FALSE	canonical	3	154	junction_1	26.1475405640955	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCAGTGCCCCTCTGGGT	575	False	NA	22	True	AATAAA	-10	NA	32536626	32572127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32537037_32547527_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32568585_32568902_32569155_32570292_32570348_32571207_32571310_32571448
ENSMUSG00000026814.17_2	chr2	+	2857	15	FSM	ENSMUSG00000026814.17	ENSMUST00000167841.8	3403	15	-8	554	-8	-3	multi-exon	FALSE	canonical	3	45	junction_1	47.9038684475993	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCAGTGCCCCTCTGGGT	574	False	NA	22	True	AATAAA	-10	NA	32536625	32572127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32537037_32547530_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32568585_32568902_32569155_32570292_32570348_32571207_32571310_32571448
ENSMUSG00000026814.17_4	chr2	+	3188	14	NIC	ENSMUSG00000026814.17	novel	3422	15	NA	NA	-13	2	intron_retention	FALSE	canonical	3	154	junction_1	26.5080092842337	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCCCCTCTGGGTTGTAT	569	False	NA	27	True	AATAAA	-15	NA	32536620	32572132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32537037_32547527_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32569155_32570292_32570348_32571207_32571310_32571448
ENSMUSG00000026816.15_0	chr2	-	2453	12	FSM	ENSMUSG00000026816.15	ENSMUST00000028157.9	2739	12	279	7	-12	-7	multi-exon	TRUE	canonical	3	147	junction_7	20.5992858738452	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCAGCACTGGTGTTTG	NA	False	NA	-56	True	AATAAA	-15	NA	28473012	28456329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_28457190_28457619_28457797_28458496_28458640_28459303_28459387_28460430_28460529_28460624_28460706_28461124_28461240_28462207_28462313_28463388_28463585_28467887_28468087_28469529_28469750_28472836
ENSMUSG00000026817.15_0	chr2	+	2012	7	FSM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	51	0	50	0	multi-exon	FALSE	canonical	3	40	junction_1	98.788775790685	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	False	NA	13	True	AATAAA	-17	NA	32515499	32525066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32515551_32518462_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUSG00000026817.15_11	chr2	+	2035	6	FSM	ENSMUSG00000026817.15	ENSMUST00000068271.5	2034	6	1	-2	1	0	multi-exon	FALSE	canonical	3	94	junction_1	85.0895998345274	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	False	NA	13	True	AATAAA	-17	NA	32519516	32525066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32519629_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUSG00000026817.15_21	chr2	+	1882	4	ISM	ENSMUSG00000026817.15	ENSMUST00000068271.5	2034	6	732	2	715	-2	3prime_fragment	FALSE	canonical	3	270	junction_3	23.0120741254576	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTATAAGAAGTGAGTGTA	NA	False	NA	9	True	AATAAA	-13	NA	32520247	32525062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUSG00000026817.15_24	chr2	+	991	1	ISM	ENSMUSG00000026817.15	ENSMUST00000113278.9	2085	7	12306	4	4543	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	False	NA	13	True	AATAAA	-17	NA	32524075	32525066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32524100_32525100
ENSMUSG00000026817.15_4	chr2	+	1976	6	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2999	0	46	0	3prime_fragment	FALSE	canonical	3	200	junction_1	44.5268458348444	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	False	NA	13	True	AATAAA	-17	NA	32518447	32525066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUSG00000026817.15_9	chr2	+	1925	5	ISM	ENSMUSG00000026817.15	ENSMUST00000068271.5	2034	6	343	-2	326	0	3prime_fragment	FALSE	canonical	3	270	junction_4	19.9374020373769	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	False	NA	13	True	AATAAA	-17	NA	32519858	32525066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUSG00000026819.16_0	chr2	-	3259	10	FSM	ENSMUSG00000026819.16	ENSMUST00000113310.9	3278	10	20	-1	-3	1	multi-exon	FALSE	canonical	3	77	junction_4	7.53919797941661	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAATGGAGCCAGGGTTTT	8173	False	NA	-8	True	AATAAA	-15	NA	32341437	32304500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32306335_32306420_32306572_32307103_32307272_32307357_32307466_32307735_32307889_32309059_32309219_32310316_32310429_32311314_32311403_32311484_32311612_32341078
ENSMUSG00000026819.16_4	chr2	-	3307	11	FSM	ENSMUSG00000026819.16	ENSMUST00000028160.15	3294	11	-16	3	7	0	multi-exon	FALSE	canonical	3	9	junction_7	31.7200252206709	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAATGGAGCCAGGGTTT	8160	False	NA	-9	True	AATAAA	-14	NA	32341450	32304501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32306335_32306420_32306572_32307103_32307272_32307357_32307466_32307735_32307889_32309059_32309219_32310316_32310429_32310667_32310704_32311314_32311403_32311484_32311612_32341078
ENSMUSG00000026820.6_0	chr2	+	1570	7	FSM	ENSMUSG00000026820.6	ENSMUST00000028162.5	4978	7	370	3038	-174	1158	multi-exon	FALSE	canonical	3	184	junction_6	7.22649446289293	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTCTGGTCTGACAAT	7462	False	NA	14	True	AATAAA	-14	NA	32286277	32292746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32286563_32287549_32287748_32290061_32290121_32290414_32290565_32290889_32291091_32291498_32291617_32292187
ENSMUSG00000026821.17_0	chr2	+	3623	18	FSM	ENSMUSG00000026821.17	ENSMUST00000028170.15	3590	18	-45	12	-45	-1	multi-exon	FALSE	canonical	3	33	junction_3	10.8097738677858	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCCTGGTCACTGTGGT	NA	False	NA	13	True	ATTAAA	-14	NA	28403292	28443081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28403573_28430722_28430834_28432301_28432496_28432866_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426_28435531_28435872_28435958_28437163_28437233_28437545_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439301_28439545_28440460_28440576_28442103
ENSMUSG00000026821.17_1	chr2	+	3588	18	NIC	ENSMUSG00000026821.17	novel	3590	18	NA	NA	-46	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	12.5469361015481	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCCTGGTCACTGTGGT	NA	False	NA	13	True	ATTAAA	-14	NA	28403291	28443081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_28403573_28430722_28430834_28432301_28432496_28432902_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426_28435531_28435872_28435958_28437163_28437233_28437545_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439301_28439545_28440460_28440576_28442103
ENSMUSG00000026821.17_18	chr2	+	3443	18	NIC	ENSMUSG00000026821.17	novel	3590	18	NA	NA	-39	-1	combination_of_known_junctions	FALSE	canonical	2	3	junction_15	17.0647048685037	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCCTGGTCACTGTGGT	NA	False	NA	13	True	ATTAAA	-14	NA	28403298	28443081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_28403573_28430722_28430834_28432301_28432496_28432866_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426_28435531_28435872_28435958_28437163_28437233_28437545_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439475_28439545_28440460_28440576_28442103
ENSMUSG00000026825.18_1	chr2	-	3810	22	NIC	ENSMUSG00000026825.18	novel	2820	23	NA	NA	4	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	5.21553583622593	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCGTGTACCTCTGCTG	NA	False	NA	0	True	AATAAA	-22	NA	32243310	32198484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32199647_32200462_32200500_32202138_32202355_32202695_32202938_32204901_32205073_32205347_32205360_32205810_32205923_32206909_32207020_32210515_32210630_32213433_32213486_32213671_32213743_32217972_32218060_32223077_32223217_32225787_32225856_32225949_32226086_32226195_32226339_32227745_32227907_32228012_32228112_32229932_32230137_32230427_32230578_32230844_32230919_32243060
ENSMUSG00000026825.18_10	chr2	-	811	1	ISM	ENSMUSG00000026825.18	ENSMUST00000113352.9	4605	22	43980	2	1352	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCGTGTACCTCTGCTG	NA	False	NA	0	True	AATAAA	-22	NA	32199295	32198484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_32198500_32199300
ENSMUSG00000026825.18_13	chr2	-	3736	22	NIC	ENSMUSG00000026825.18	novel	4605	22	NA	NA	-4	-1	combination_of_known_splicesites	FALSE	canonical	1	4	junction_5	4.15351666425839	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGGAATTGCGTGTACCT	NA	False	NA	-6	True	AATAAA	-16	NA	32243267	32198490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32199647_32202138_32202355_32202695_32202938_32204901_32205073_32205347_32205360_32205810_32205923_32206909_32207020_32210515_32210630_32213190_32213203_32213433_32213486_32213671_32213743_32217972_32218060_32224693_32224833_32225787_32225856_32225949_32226086_32226195_32226339_32227745_32227907_32228012_32228112_32229932_32230137_32230427_32230578_32230844_32230919_32243060
ENSMUSG00000026825.18_2	chr2	-	3800	22	NIC	ENSMUSG00000026825.18	novel	4605	22	NA	NA	-8	-2	combination_of_known_junctions	TRUE	canonical	1	2	junction_1	4.35967919933204	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCGTGTACCTCTGCTG	NA	False	NA	0	True	AATAAA	-22	NA	32243322	32198484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32199650_32202138_32202355_32202695_32202938_32204901_32205073_32205347_32205360_32205810_32205923_32206909_32207020_32210515_32210630_32213190_32213203_32213433_32213486_32213671_32213743_32217972_32218060_32224693_32224833_32225787_32225856_32225949_32226086_32226195_32226339_32227745_32227907_32228012_32228112_32229932_32230137_32230427_32230578_32230844_32230919_32243060
ENSMUSG00000026825.18_7	chr2	-	3459	12	NIC	ENSMUSG00000026825.18	novel	2820	23	NA	NA	-8564	-2	combination_of_known_splicesites	TRUE	canonical	1	4	junction_5	4.85832335123178	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCGTGTACCTCTGCTG	NA	False	NA	0	True	AATAAA	-22	NA	32219157	32198484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32199647_32202138_32202355_32202695_32202938_32204901_32205073_32205347_32205360_32205810_32205923_32206909_32207020_32210515_32210630_32213190_32213203_32213433_32213486_32213671_32213743_32217972
ENSMUSG00000026826.14_1	chr2	-	3430	8	NIC	ENSMUSG00000026826.14	novel	3422	8	NA	NA	-136	-7	combination_of_known_junctions	FALSE	canonical	1	2	junction_5	1.27775312999988	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAACTCTGTCTTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	57014151	56996848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_56998425_56998572_56998631_56999074_56999278_57000125_57000290_57000648_57000779_57001587_57002454_57002962_57003085_57013840
ENSMUSG00000026826.14_2	chr2	-	3538	8	FSM	ENSMUSG00000026826.14	ENSMUST00000112629.8	3422	8	-128	12	-128	-12	multi-exon	FALSE	canonical	1	2	junction_5	1.27775312999988	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACAGAACTCTGTCT	NA	False	NA	NA	False	AATAAA	-7	NA	57014143	56996853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_56998425_56998572_56998752_56999074_56999278_57000125_57000290_57000648_57000779_57001587_57002454_57002962_57003085_57013840
ENSMUSG00000026826.14_3	chr2	-	3479	8	FSM	ENSMUSG00000026826.14	ENSMUST00000028166.9	3568	8	82	7	82	-7	multi-exon	TRUE	canonical	1	1	junction_7	1.49829835452879	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAACTCTGTCTTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	57004968	56996848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_56998425_56998572_56998752_56999074_56999278_57000125_57000290_57000648_57000779_57001587_57002454_57002962_57003085_57004729
ENSMUSG00000026827.13_0	chr2	+	5738	17	FSM	ENSMUSG00000026827.13	ENSMUST00000169687.8	5745	17	0	7	0	-7	multi-exon	TRUE	canonical	3	41	junction_1	44.6148447828747	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCGCTCCATTTGTTGGC	NA	False	NA	NA	False	AATAAA	-8	NA	57127689	57260724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_57128001_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
ENSMUSG00000026827.13_27	chr2	+	2631	1	ISM	ENSMUSG00000026827.13	ENSMUST00000169687.8	5745	17	130410	1	100711	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATTTGTTGGCATTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	57258099	57260730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_57258100_57260700
ENSMUSG00000026827.13_5	chr2	+	5551	17	FSM	ENSMUSG00000026827.13	ENSMUST00000028167.3	5620	17	62	7	62	-7	multi-exon	FALSE	canonical	3	146	junction_2	27.9815089612766	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCGCTCCATTTGTTGGC	NA	False	NA	NA	False	AATAAA	-8	NA	57128455	57260724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_57128580_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
ENSMUSG00000026829.10_0	chr2	+	3708	7	FSM	ENSMUSG00000063611.6_ENSMUSG00000026829.10	ENSMUST00000163121.8	1335	7	-17	-2356	-17	-2	multi-exon	FALSE	canonical	1	1	junction_1	2.21108319357027	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAAGTTGCCTTGGTCAT	4558	False	NA	6	True	NA	NA	NA	28386885	28397783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28387077_28387680_28387849_28388387_28388454_28392078_28392130_28392208_28392245_28393137_28393273_28394722
ENSMUSG00000026831.17_0	chr2	-	734	4	NNC	ENSMUSG00000026831.17	novel	812	3	NA	NA	18	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	63.8957484240279	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCTGCCACGCCTCTTA	NA	False	NA	-2	True	ATTAAA	-17	NA	28356310	28352014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_28352447_28355148_28355228_28356045_28356125_28356166
ENSMUSG00000026831.17_1	chr2	-	779	3	FSM	ENSMUSG00000026831.17	ENSMUST00000086370.11	812	3	29	4	13	-4	multi-exon	FALSE	canonical	3	128	junction_1	7	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTTCTGCCACGCCTCT	NA	False	NA	-4	True	ATTAAA	-15	NA	28356315	28352016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_28352447_28355148_28355228_28356045
ENSMUSG00000026831.17_4	chr2	-	92	1	ISM	ENSMUSG00000026831.17	ENSMUST00000126242.2	666	3	3758	2	3758	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCTGCCACGCCTCTTA	NA	False	NA	-2	True	ATTAAA	-17	NA	28352106	28352014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_28352000_28352100
ENSMUSG00000026833.19_0	chr2	+	1131	4	FSM	ENSMUSG00000026833.19	ENSMUST00000152415.2	1102	4	-29	0	-29	0	multi-exon	FALSE	canonical	2	4	junction_1	19.3045763140937	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGTGGTGTTCTGAG	6465	False	NA	3	True	AATAAA	-11	NA	28082974	28104437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28083475_28098089_28098240_28102543_28102700_28104112
ENSMUSG00000026833.19_1	chr2	+	2810	6	FSM	ENSMUSG00000026833.19	ENSMUST00000100244.10	2686	6	-130	6	-29	-6	multi-exon	FALSE	canonical	2	4	junction_1	17.749366185867	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAACCTCGATTTGCTTA	6465	False	NA	NA	False	AATAAA	-10	NA	28082974	28120742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28083475_28098089_28098240_28102543_28102700_28104620_28104841_28112562_28112670_28119065
ENSMUSG00000026833.19_10	chr2	+	1991	3	ISM	ENSMUSG00000026833.19	ENSMUST00000028177.11	2757	6	8963	6	8963	-6	3prime_fragment	FALSE	canonical	3	35	junction_1	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAACCTCGATTTGCTTA	9166	False	NA	NA	False	AATAAA	-10	NA	28104633	28120742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_28104841_28112562_28112670_28119065
ENSMUSG00000026833.19_11	chr2	+	1422	1	ISM	ENSMUSG00000026833.19	ENSMUST00000100244.10	2686	6	36171	51	23605	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTGTACTGTTCAGTTA	NA	False	NA	NA	False	AATAAA	-16	NA	28119275	28120697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_28119300_28120700
ENSMUSG00000026833.19_3	chr2	+	2745	6	FSM	ENSMUSG00000026833.19	ENSMUST00000028177.11	2757	6	6	6	6	-6	multi-exon	FALSE	canonical	3	35	junction_4	5.85149553533112	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAACCTCGATTTGCTTA	209	False	NA	NA	False	AATAAA	-10	NA	28095676	28120742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28096112_28098089_28098240_28102543_28102700_28104620_28104841_28112562_28112670_28119065
ENSMUSG00000026833.19_5	chr2	+	1072	4	FSM	ENSMUSG00000026833.19	ENSMUST00000102879.4	1072	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	11.7756811551038	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGTGGTGTTCTGAG	203	False	NA	3	True	AATAAA	-11	NA	28095670	28104437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28096112_28098089_28098240_28102543_28102700_28104112
ENSMUSG00000026836.16_0	chr2	-	3428	12	FSM	ENSMUSG00000026836.16	ENSMUST00000112601.9	3050	12	-383	5	-54	-5	multi-exon	FALSE	canonical	3	10	junction_10	14.1281034036818	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCAAATGATGATTTTCC	NA	False	NA	-10	True	AATAAA	-9	NA	58457223	58336457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892_58353169_58358525_58358673_58364184_58364285_58367616_58367829_58369676_58369941_58390495_58390570_58406035_58406313_58427789_58427886_58456798
ENSMUSG00000026836.16_1	chr2	-	3155	11	FSM	ENSMUSG00000026836.16	ENSMUST00000056376.12	2394	11	-54	-707	-54	-1	multi-exon	FALSE	canonical	3	23	junction_9	11.677328461596	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGATGATTTTCCTTCT	NA	False	NA	-6	True	AATAAA	-13	NA	58457223	58336453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892_58353169_58358525_58358673_58364184_58364285_58367616_58367829_58369676_58369941_58390495_58390570_58427789_58427886_58456798
ENSMUSG00000026836.16_2	chr2	-	1653	4	ISM	ENSMUSG00000026836.16	ENSMUST00000112599.8	2891	10	53299	9	53299	-2	3prime_fragment	FALSE	canonical	3	41	junction_1	12.0277457017791	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATGATGATTTTCCTTC	4812	False	NA	-7	True	AATAAA	-12	NA	58352985	58336454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892
ENSMUSG00000026836.16_4	chr2	-	2355	8	ISM	ENSMUSG00000026836.16	ENSMUST00000112599.8	2891	10	36545	12	36545	-5	3prime_fragment	FALSE	canonical	3	39	junction_6	9.62776596885385	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCAAATGATGATTTTCC	NA	False	NA	-10	True	AATAAA	-9	NA	58369739	58336457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892_58353169_58358525_58358673_58364184_58364285_58367616_58367829_58369676
ENSMUSG00000026837.17_0	chr2	+	6402	65	NIC	ENSMUSG00000026837.17	novel	8406	66	NA	NA	-55	95	combination_of_known_splicesites	TRUE	canonical	0	0	junction_63	12.7869791560595	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTAAGTAAATATTTGT	NA	False	NA	6	True	ATTAAA	-21	NA	27776381	27927536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_27776937_27812028_27812197_27818053_27818268_27819390_27819554_27839638_27839771_27840638_27840771_27841298_27841539_27842284_27842459_27842980_27843038_27848233_27848276_27848496_27848560_27850398_27850474_27852073_27852167_27854079_27854137_27855262_27855317_27855608_27855663_27856941_27856996_27858150_27858205_27859756_27859811_27861458_27861504_27863159_27863214_27863879_27863925_27864455_27864510_27864704_27864750_27865566_27865621_27870483_27870529_27871048_27871103_27875060_27875106_27876732_27876787_27879150_27879259_27880049_27880104_27882005_27882060_27885717_27885763_27885872_27885927_27886880_27886926_27887574_27887629_27888737_27888792_27891581_27891636_27892494_27892603_27893872_27893963_27894053_27894108_27895190_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27922602_27922837_27926881
ENSMUSG00000026837.17_1	chr2	+	6458	66	FSM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	-11	1959	-11	126	multi-exon	FALSE	canonical	2	10	junction_13	12.1052973880063	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAAGTGTGCCTG	NA	False	NA	37	True	AGTAAA	-19	NA	27776425	27927567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_27776937_27812028_27812197_27818053_27818268_27819390_27819554_27839638_27839771_27840638_27840771_27841298_27841539_27842284_27842459_27842980_27843038_27848233_27848276_27848496_27848560_27850398_27850474_27852073_27852167_27854079_27854137_27855262_27855317_27855608_27855663_27856941_27856996_27858150_27858205_27859756_27859811_27861458_27861504_27863159_27863214_27863879_27863925_27864455_27864510_27864704_27864750_27865566_27865621_27870483_27870529_27871048_27871103_27875060_27875106_27876732_27876787_27879150_27879259_27880049_27880104_27882005_27882060_27885717_27885763_27885872_27885927_27886880_27886926_27887574_27887629_27888737_27888792_27891581_27891636_27892494_27892603_27893872_27893963_27894053_27894108_27895190_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_10	chr2	+	3689	40	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	94623	1984	-36393	101	3prime_fragment	FALSE	canonical	3	23	junction_4	10.0764989797885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAATATTTGTATTGTA	NA	False	NA	12	True	ATTAAA	-27	NA	27871059	27927542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27871103_27875060_27875106_27876732_27876787_27879150_27879259_27880049_27880104_27882005_27882060_27885717_27885763_27885872_27885927_27886880_27886926_27887574_27887629_27888737_27888792_27891581_27891636_27892494_27892603_27893872_27893963_27894053_27894108_27895190_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_11	chr2	+	3518	37	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	102768	1959	-28248	126	3prime_fragment	FALSE	canonical	3	23	junction_1	10.2400207368617	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAAGTGTGCCTG	NA	False	NA	37	True	AGTAAA	-19	NA	27879204	27927567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27879259_27880049_27880104_27882005_27882060_27885717_27885763_27885872_27885927_27886880_27886926_27887574_27887629_27888737_27888792_27891581_27891636_27892494_27892603_27893872_27893963_27894053_27894108_27895190_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_14	chr2	+	3044	28	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	116058	1965	-14958	120	3prime_fragment	FALSE	canonical	3	25	junction_8	9.01986833004551	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGTTATAAATGTTAAGTG	6008	False	NA	31	True	AGTAAA	-13	NA	27892494	27927561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27892603_27893872_27893963_27894053_27894108_27895190_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_16	chr2	+	2682	24	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	121333	1957	-9683	128	3prime_fragment	FALSE	canonical	3	25	junction_4	8.94342647572249	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTAAGTGTGCCTGGC	2473	False	NA	39	True	AGTAAA	-21	NA	27897769	27927569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_18	chr2	+	2433	21	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	123752	1993	-7264	92	3prime_fragment	FALSE	canonical	3	25	junction_1	9.14549069213894	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAATTTTAAGTAAATATT	4892	False	NA	3	True	ATTAAA	-18	NA	27900188	27927533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_23	chr2	+	1859	1	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	150869	362	15008	-362	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGCCTCTGGCATCAT	NA	False	NA	NA	False	AATAAA	-19	NA	27927305	27929164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27927300_27929200
ENSMUSG00000026837.17_24	chr2	+	4829	59	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	65880	1996	-65136	89	3prime_fragment	FALSE	canonical	2	10	junction_6	12.5770869178392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAGAATTTTAAGTAAAT	NA	False	NA	0	True	ATTAAA	-15	NA	27842316	27927530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27842459_27842980_27843038_27848233_27848276_27848496_27848560_27850398_27850474_27852073_27852167_27854079_27854137_27855262_27855317_27855608_27855663_27856941_27856996_27858150_27858205_27859756_27859811_27861458_27861504_27863159_27863214_27863879_27863925_27864455_27864510_27864704_27864750_27865566_27865621_27870483_27870529_27871048_27871103_27875060_27875106_27876732_27876787_27879150_27879259_27880049_27880104_27882005_27882060_27885717_27885763_27885872_27885927_27886880_27886926_27887574_27887629_27888737_27888792_27891581_27891636_27892494_27892603_27893872_27893963_27894053_27894108_27895190_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_25	chr2	+	4684	58	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	66551	1992	-64465	93	3prime_fragment	FALSE	canonical	2	10	junction_5	12.4369013765902	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATTTTAAGTAAATATTT	NA	False	NA	4	True	ATTAAA	-19	NA	27842987	27927534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27843038_27848233_27848276_27848496_27848560_27850398_27850474_27852073_27852167_27854079_27854137_27855262_27855317_27855608_27855663_27856941_27856996_27858150_27858205_27859756_27859811_27861458_27861504_27863159_27863214_27863879_27863925_27864455_27864510_27864704_27864750_27865566_27865621_27870483_27870529_27871048_27871103_27875060_27875106_27876732_27876787_27879150_27879259_27880049_27880104_27882005_27882060_27885717_27885763_27885872_27885927_27886880_27886926_27887574_27887629_27888737_27888792_27891581_27891636_27892494_27892603_27893872_27893963_27894053_27894108_27895190_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_26	chr2	+	4382	53	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	77655	1959	-53361	126	3prime_fragment	FALSE	canonical	2	14	junction_2	11.6979205910216	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAAGTGTGCCTG	NA	False	NA	37	True	AGTAAA	-19	NA	27854091	27927567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27854137_27855262_27855317_27855608_27855663_27856941_27856996_27858150_27858205_27859756_27859811_27861458_27861504_27863159_27863214_27863879_27863925_27864455_27864510_27864704_27864750_27865566_27865621_27870483_27870529_27871048_27871103_27875060_27875106_27876732_27876787_27879150_27879259_27880049_27880104_27882005_27882060_27885717_27885763_27885872_27885927_27886880_27886926_27887574_27887629_27888737_27888792_27891581_27891636_27892494_27892603_27893872_27893963_27894053_27894108_27895190_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_30	chr2	+	2736	25	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	118791	1984	-12225	101	3prime_fragment	FALSE	canonical	3	25	junction_5	8.76070773396762	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAATATTTGTATTGTA	8741	False	NA	12	True	ATTAAA	-27	NA	27895227	27927542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_31	chr2	+	4128	22	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	123596	362	-7420	-362	3prime_fragment	FALSE	canonical	3	25	junction_2	9.11105580426773	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGCCTCTGGCATCAT	4736	False	NA	NA	False	AATAAA	-19	NA	27900032	27929164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_32	chr2	+	2274	19	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	124818	1996	-6198	89	3prime_fragment	FALSE	canonical	3	32	junction_17	7.08676387515643	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAGAATTTTAAGTAAAT	5958	False	NA	0	True	ATTAAA	-15	NA	27901254	27927530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_34	chr2	+	1795	12	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	130668	1992	-348	93	3prime_fragment	FALSE	canonical	3	32	junction_10	7.27840687318113	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATTTTAAGTAAATATTT	NA	False	NA	4	True	ATTAAA	-19	NA	27907104	27927534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_35	chr2	+	2857	5	ISM	ENSMUSG00000026837.17	ENSMUST00000145423.2	1049	7	7260	-2135	2415	-364	3prime_fragment	FALSE	canonical	3	32	junction_3	5.16599457994296	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAAATGCCTCTGGCATC	2822	False	NA	NA	False	AATAAA	-17	NA	27914712	27929162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_6	chr2	+	3933	45	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	87445	1992	-43571	93	3prime_fragment	FALSE	canonical	3	21	junction_1	10.2060132574659	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATTTTAAGTAAATATTT	NA	False	NA	4	True	ATTAAA	-19	NA	27863881	27927534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27863925_27864455_27864510_27864704_27864750_27865566_27865621_27870483_27870529_27871048_27871103_27875060_27875106_27876732_27876787_27879150_27879259_27880049_27880104_27882005_27882060_27885717_27885763_27885872_27885927_27886880_27886926_27887574_27887629_27888737_27888792_27891581_27891636_27892494_27892603_27893872_27893963_27894053_27894108_27895190_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026837.17_7	chr2	+	3923	44	ISM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	88019	1959	-42997	126	3prime_fragment	FALSE	canonical	3	23	junction_8	10.0717276141477	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAAGTGTGCCTG	NA	False	NA	37	True	AGTAAA	-19	NA	27864455	27927567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27864510_27864704_27864750_27865566_27865621_27870483_27870529_27871048_27871103_27875060_27875106_27876732_27876787_27879150_27879259_27880049_27880104_27882005_27882060_27885717_27885763_27885872_27885927_27886880_27886926_27887574_27887629_27888737_27888792_27891581_27891636_27892494_27892603_27893872_27893963_27894053_27894108_27895190_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
ENSMUSG00000026842.17_0	chr2	+	6333	11	FSM	ENSMUSG00000026842.17	ENSMUST00000075759.13	6327	11	-13	7	1	-7	multi-exon	FALSE	canonical	3	69	junction_1	36.9031163995671	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGACAGACTGCTTGGTCT	5741	False	NA	13	True	AATAAA	-14	NA	31578549	31693546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31579955_31668345_31668520_31668932_31669229_31674518_31674792_31680282_31680368_31680673_31680852_31682249_31682435_31684553_31684707_31686984_31687075_31687574_31687740_31690217
ENSMUSG00000026842.17_11	chr2	+	5068	11	FSM	ENSMUSG00000026842.17	ENSMUST00000028190.13	5794	11	33	693	33	-7	multi-exon	FALSE	canonical	3	93	junction_1	30.1131200641846	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGACAGACTGCTTGGTCT	NA	False	NA	13	True	AATAAA	-14	NA	31649987	31693546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31650128_31668345_31668520_31668932_31669229_31674518_31674792_31680282_31680368_31680673_31680852_31682249_31682435_31684553_31684707_31686984_31687075_31687574_31687740_31690217
ENSMUSG00000026842.17_27	chr2	+	3998	6	ISM	ENSMUSG00000026842.17	ENSMUST00000028190.13	5794	11	30821	693	593	-7	3prime_fragment	FALSE	canonical	3	170	junction_2	10.0478853496644	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGACAGACTGCTTGGTCT	497	False	NA	13	True	AATAAA	-14	NA	31680775	31693546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_31680852_31682249_31682435_31684553_31684707_31686984_31687075_31687574_31687740_31690217
ENSMUSG00000026842.17_34	chr2	+	2621	1	ISM	ENSMUSG00000026842.17	ENSMUST00000075759.13	6327	11	112364	6	4269	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGACAGACTGCTTGGTCTG	2384	False	NA	14	True	AATAAA	-15	NA	31690926	31693547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_31690900_31693500
ENSMUSG00000026843.16_0	chr2	+	3104	19	FSM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	152	12	-11	-4	multi-exon	FALSE	canonical	3	465	junction_18	67.3624112131124	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTTCTTAGTCTGTTT	645	False	NA	24	True	AATAAA	-25	NA	31462814	31507526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
ENSMUSG00000026843.16_1	chr2	+	3165	19	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	-11	-4	intron_retention	FALSE	canonical	3	154	junction_18	127.170586318894	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTTCTTAGTCTGTTT	645	False	NA	24	True	AATAAA	-25	NA	31462814	31507526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505699_31506190
ENSMUSG00000026843.16_111	chr2	+	1206	1	FSM	ENSMUSG00000026843.16	ENSMUST00000132534.4	2342	1	1134	2	1134	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTAGTCTGTTTTGTT	NA	False	NA	28	True	AATAAA	-29	NA	31506324	31507530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31506300_31507500
ENSMUSG00000026843.16_3	chr2	+	3110	19	NIC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	2	-4	intron_retention	TRUE	canonical	3	64	junction_2	150.483295492298	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTTCTTAGTCTGTTT	636	False	NA	24	True	AATAAA	-25	NA	31462805	31507526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31462966_31473166_31473273_31482477_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
ENSMUSG00000026843.16_4	chr2	+	3658	18	FSM	ENSMUSG00000026843.16	ENSMUST00000055244.13	3648	18	-15	5	10	-4	multi-exon	FALSE	canonical	3	582	junction_10	50.5976051514182	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTTCTTAGTCTGTTT	644	False	NA	24	True	AATAAA	-25	NA	31462813	31507526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509
ENSMUSG00000026843.16_6	chr2	+	3026	18	NIC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	-5	-4	intron_retention	FALSE	canonical	3	48	junction_16	158.982817726256	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTTCTTAGTCTGTTT	651	False	NA	24	True	AATAAA	-25	NA	31462820	31507526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31505509_31505638_31506190
ENSMUSG00000026848.15_0	chr2	+	2986	5	FSM	ENSMUSG00000026848.15	ENSMUST00000028199.12	3039	5	49	4	17	0	multi-exon	FALSE	canonical	1	21	junction_2	34.4990941910074	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTTTCCTGAGCTTTTC	NA	False	NA	9	True	AATAAA	-14	NA	30843019	30849023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30843236_30843763_30844030_30845789_30845966_30846459_30846588_30846823
ENSMUSG00000026848.15_11	chr2	+	2488	3	ISM	ENSMUSG00000026848.15	ENSMUST00000195010.2	892	4	542	-1900	542	0	3prime_fragment	FALSE	canonical	3	100	junction_1	0.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTTCCTGAGCTTTTCC	158	False	NA	10	True	AATAAA	-15	NA	30845806	30849024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30845966_30846459_30846588_30846823
ENSMUSG00000026848.15_18	chr2	+	1584	1	ISM	ENSMUSG00000026848.15	ENSMUST00000028199.12	3039	5	4471	2	2177	1	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTCCTGAGCTTTTCCT	1793	False	NA	11	True	AATAAA	-16	NA	30847441	30849025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30847400_30849000
ENSMUSG00000026848.15_3	chr2	+	2998	5	NIC	ENSMUSG00000026848.15	novel	2809	5	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	43.5918570377542	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTTCCTGAGCTTTTCC	NA	False	NA	10	True	AATAAA	-15	NA	30843018	30849024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_30843236_30843763_30844030_30845779_30845966_30846459_30846588_30846823
ENSMUSG00000026848.15_8	chr2	+	3140	4	FSM	ENSMUSG00000026848.15	ENSMUST00000155213.8	1324	4	208	-2024	193	-2	multi-exon	FALSE	canonical	1	21	junction_1	37.4788829431544	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTAACTTTCCTGAGCTTT	NA	False	NA	7	True	AATAAA	-12	NA	30843391	30849021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30844030_30845789_30845966_30846459_30846588_30846823
ENSMUSG00000026849.19_0	chr2	-	1346	5	FSM	ENSMUSG00000026849.19	ENSMUST00000028200.9	1401	5	41	14	-4	-14	multi-exon	FALSE	canonical	0	0	junction_3	220.841996685413	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAAGCTTTCAGCGGTG	NA	False	NA	-22	True	TTTAAA	-16	NA	30857904	30850652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101_30857368_30857685
ENSMUSG00000026849.19_1	chr2	-	4572	4	NIC	ENSMUSG00000026849.19	novel	1401	5	NA	NA	-10	-14	intron_retention	FALSE	canonical	3	466	junction_1	30.5759527879163	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAAGCTTTCAGCGGTG	NA	False	NA	-22	True	TTTAAA	-16	NA	30857910	30850652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30851210_30853486_30853615_30853705_30857368_30857685
ENSMUSG00000026851.10_3	chr2	-	1283	9	FSM	ENSMUSG00000026851.10	ENSMUST00000028205.10	1984	9	37	664	37	-664	multi-exon	FALSE	canonical	3	349	junction_7	16.1240309786356	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATATGTTGCCTGTCTTCT	NA	False	NA	NA	False	ATTAAA	-9	NA	30871916	30862852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871494_30871555_30871789
ENSMUSG00000026851.10_5	chr2	-	2715	8	NIC	ENSMUSG00000026851.10	novel	1984	9	NA	NA	37	-664	intron_retention	FALSE	canonical	3	354	junction_3	15.6973935182025	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATATGTTGCCTGTCTTCT	NA	False	NA	NA	False	ATTAAA	-9	NA	30871916	30862852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30871555_30871789
ENSMUSG00000026853.16_18	chr2	-	3302	14	NIC	ENSMUSG00000026853.16	novel	3833	14	NA	NA	-189	560	intron_retention	FALSE	canonical	1	2	junction_13	17.7570720972647	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGATTCAGCTGAGGGG	NA	False	NA	-6	True	AATAAA	-18	NA	30306014	30291949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30292806_30293500_30293639_30294539_30294603_30294949_30295086_30295177_30295301_30295396_30295517_30296379_30296481_30296967_30297147_30297717_30297893_30298067_30298234_30298752_30298807_30299968_30300088_30302994_30303259_30305206
ENSMUSG00000026853.16_2	chr2	-	2715	14	FSM	ENSMUSG00000026853.16	ENSMUST00000028207.13	3833	14	281	837	-8	560	multi-exon	TRUE	canonical	3	47	junction_2	7.8897731722819	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGATTCAGCTGAGGGG	NA	False	NA	-6	True	AATAAA	-18	NA	30305544	30291949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30292806_30293500_30293639_30294539_30294603_30294949_30295086_30295177_30295301_30295396_30295517_30296379_30296481_30296967_30297147_30297717_30297893_30298067_30298234_30298752_30298807_30299968_30300088_30302994_30303259_30305323
ENSMUSG00000026854.17_2	chr2	+	4052	25	FSM	ENSMUSG00000026854.17	ENSMUST00000102849.11	5088	25	90	946	6	-942	multi-exon	TRUE	canonical	1	7	junction_21	9.09889721645187	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTAGCTTGTACTGTGACA	NA	False	NA	19	True	AATAAA	-19	NA	30872380	30912652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30872411_30886059_30886160_30888784_30888881_30890068_30890123_30892567_30892631_30892927_30893060_30894415_30894513_30894943_30895014_30896395_30896510_30897790_30897870_30900177_30900626_30900990_30901135_30901392_30901509_30901634_30901808_30902318_30902414_30906299_30906334_30906504_30906551_30907140_30907322_30907396_30907524_30907693_30907864_30907944_30908027_30908726_30908836_30909796_30909900_30910840_30910913_30911335
ENSMUSG00000026854.17_22	chr2	+	1607	4	NNC	ENSMUSG00000026854.17	novel	622	2	NA	NA	-543	-943	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	12.5521135891752	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTAGCTTGTACTGTGAC	7657	False	NA	18	True	AATAAA	-18	NA	30909287	30912651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_30909404_30909796_30909900_30910840_30910913_30911335
ENSMUSG00000026856.15_0	chr2	+	2072	8	FSM	ENSMUSG00000026856.15	ENSMUST00000028209.15	2251	8	176	3	0	-1	multi-exon	FALSE	canonical	3	287	junction_6	27.7995742149158	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGCTGAGCATACATTAC	NA	False	NA	6	True	AATAAA	-13	NA	30282441	30290538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
ENSMUSG00000026856.15_25	chr2	+	1678	4	ISM	ENSMUSG00000026856.15	ENSMUST00000123202.8	2294	9	4040	2	858	-2	3prime_fragment	FALSE	canonical	3	287	junction_2	23.8932812499432	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGAGCATACATTA	43	False	NA	5	True	AATAAA	-12	NA	30286467	30290537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30286543_30287030_30287160_30287479_30287570_30289153
ENSMUSG00000026856.15_27	chr2	+	1199	1	ISM	ENSMUSG00000026856.15	ENSMUST00000028209.15	2251	8	7075	2	1908	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	2916	False	NA	7	True	AATAAA	-14	NA	30289340	30290539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30289300_30290500
ENSMUSG00000026857.10_1	chr2	+	1227	4	FSM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	144	16	13	0	multi-exon	FALSE	canonical	3	480	junction_2	33.3466640010661	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGCCCCAGGCAGTCT	NA	False	NA	11	True	AATAAA	-17	NA	30697981	30713029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30698096_30709640_30709845_30710460_30710714_30712373
ENSMUSG00000026857.10_2	chr2	+	1165	4	FSM	ENSMUSG00000026857.10	ENSMUST00000138889.8	1192	4	29	-2	13	2	multi-exon	FALSE	canonical	3	90	junction_2	216.499422632025	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCCCCAGGCAGTCTGT	NA	False	NA	13	True	AATAAA	-19	NA	30697981	30713031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30698096_30709640_30709781_30710460_30710714_30712373
ENSMUSG00000026858.19_0	chr2	+	3355	16	FSM	ENSMUSG00000026858.19	ENSMUST00000077977.14	3381	16	22	4	1	-2	multi-exon	TRUE	canonical	3	32	junction_1	8.28385310240484	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTCTCTGTGTCTTGCT	NA	False	NA	2	True	GATAAA	-12	NA	30254266	30275529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30254318_30257563_30257800_30258888_30259100_30260306_30260420_30261126_30261245_30261544_30261682_30265684_30265803_30266657_30266759_30267490_30267607_30267982_30268056_30268185_30268273_30271649_30271749_30271950_30272086_30272977_30273032_30273601_30273719_30273940
ENSMUSG00000026858.19_16	chr2	+	3294	15	ISM	ENSMUSG00000026858.19	ENSMUST00000100214.10	3586	16	3257	11	-142	-11	3prime_fragment	FALSE	canonical	3	43	junction_6	6.39036264181287	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGAAGCGACTCTTCTCTG	NA	False	NA	-7	True	GATAAA	-3	NA	30257564	30275520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30257800_30258888_30259100_30260306_30260420_30261126_30261245_30261544_30261682_30265684_30265803_30266657_30266759_30267490_30267607_30267982_30268056_30268185_30268273_30271649_30271749_30271950_30272086_30272977_30273032_30273601_30273719_30273940
ENSMUSG00000026858.19_21	chr2	+	3039	14	ISM	ENSMUSG00000026858.19	ENSMUST00000100214.10	3586	16	4602	10	483	-10	3prime_fragment	FALSE	canonical	3	43	junction_5	6.58040843321514	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAAGCGACTCTTCTCTGT	NA	False	NA	-6	True	GATAAA	-4	NA	30258909	30275521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30259100_30260306_30260420_30261126_30261245_30261544_30261682_30265684_30265803_30266657_30266759_30267490_30267607_30267982_30268056_30268185_30268273_30271649_30271749_30271950_30272086_30272977_30273032_30273601_30273719_30273940
ENSMUSG00000026858.19_27	chr2	+	1407	1	ISM	ENSMUSG00000026858.19	ENSMUST00000077977.14	3381	16	19880	2	2169	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCTCTGTGTCTTGCTGG	6740	False	NA	4	True	GATAAA	-14	NA	30274124	30275531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30274100_30275500
ENSMUSG00000026860.17_10	chr2	-	2944	4	ISM	ENSMUSG00000026860.17	ENSMUST00000151354.8	1823	9	10740	-321	-909	-3	3prime_fragment	FALSE	canonical	3	337	junction_1	18.8384948679264	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAATCAGGATCTCAGTCC	NA	False	NA	-15	True	AATAAA	-11	NA	30238577	30234825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_30235440_30235710_30236466_30236622_30236713_30237092
ENSMUSG00000026860.17_11	chr2	-	5273	8	NIC	ENSMUSG00000026860.17	novel	1823	9	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	286	junction_4	33.7463527885698	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATCAGGATCTCAGTCCA	NA	False	NA	-14	True	AATAAA	-12	NA	30249262	30234824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30235440_30235710_30236466_30236622_30236713_30237092_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUSG00000026860.17_13	chr2	-	4871	9	NIC	ENSMUSG00000026860.17	novel	1851	13	NA	NA	1	0	intron_retention	FALSE	canonical	3	236	junction_2	45.3782712319454	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249271	30234822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUSG00000026860.17_19	chr2	-	1307	10	FSM	ENSMUSG00000026860.17	ENSMUST00000113620.10	1694	10	6	381	1	-51	multi-exon	FALSE	canonical	3	12	junction_5	106.475639131188	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGGCCCCTCTGCTAGT	NA	False	NA	-7	True	ATTAAA	-21	NA	30249271	30235203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUSG00000026860.17_3	chr2	-	1758	11	FSM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	47	5	-4	-3	multi-exon	FALSE	canonical	3	213	junction_5	55.8	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAATCAGGATCTCAGTCC	NA	False	NA	-15	True	AATAAA	-11	NA	30249281	30234825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUSG00000026860.17_44	chr2	-	1766	12	FSM	ENSMUSG00000026860.17	ENSMUST00000100215.11	1749	12	-19	2	1	0	multi-exon	FALSE	canonical	3	26	junction_3	118.792269553979	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249271	30234822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUSG00000026864.14_0	chr2	+	2539	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	-2	76	-2	-76	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	1456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGTCTAATTTTTGTG	NA	False	NA	22	True	AATAAA	-13	NA	34662104	34666467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
ENSMUSG00000026864.14_1	chr2	+	2457	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	123	1092	-2	-76	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	3212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGTCTAATTTTTGTG	NA	False	NA	22	True	AATAAA	-13	NA	34662104	34666467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
ENSMUSG00000026867.20_1	chr2	-	6249	26	FSM	ENSMUSG00000026867.20	ENSMUST00000113099.10	5758	26	154	-645	4	-156	multi-exon	FALSE	canonical	2	81	junction_18	31.5772069695849	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGAAAATTTTGAATAGT	5934	False	NA	-9	True	AATAAA	-10	NA	34644419	34566351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34589837_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607264_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342_34619187_34620474_34620693_34644277
ENSMUSG00000026867.20_2	chr2	-	6182	26	FSM	ENSMUSG00000026867.20	ENSMUST00000028224.15	5695	26	158	-645	8	-156	multi-exon	FALSE	canonical	2	111	junction_18	27.1558465159899	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGAAAATTTTGAATAGT	5938	False	NA	-9	True	AATAAA	-10	NA	34644415	34566351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34589837_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607327_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342_34619187_34620474_34620693_34644277
ENSMUSG00000026867.20_24	chr2	-	4793	24	ISM	ENSMUSG00000026867.20	ENSMUST00000113099.10	5758	26	25836	2	125	-2	3prime_fragment	FALSE	canonical	2	81	junction_18	32.0358966902533	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34618737	34566998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34589837_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607264_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342
ENSMUSG00000026869.13_0	chr2	-	2004	10	FSM	ENSMUSG00000026869.13	ENSMUST00000028225.12	4397	10	25	2368	-4	0	multi-exon	FALSE	canonical	3	516	junction_4	38.498997902623	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGTTGGTATTCCG	NA	False	NA	-14	True	AATAAA	-14	NA	34760949	34742113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34756904_34757050_34760761
ENSMUSG00000026869.13_4	chr2	-	1854	9	NIC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	-4	-5	combination_of_known_splicesites	FALSE	canonical	3	104	junction_8	158.265945089271	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTTTGGCGTTGGTA	NA	False	NA	-19	True	AATAAA	-9	NA	34760949	34742118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34760761
ENSMUSG00000026870.20_0	chr2	+	2283	6	FSM	ENSMUSG00000026870.20	ENSMUST00000113068.9	2278	6	-6	1	-6	-1	multi-exon	FALSE	canonical	0	0	junction_5	0.8	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCATGAATTTACTTTTA	NA	False	NA	NA	False	AATAAA	-14	NA	34764401	34782070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_34764604_34772303_34772450_34775882_34775943_34777763_34777810_34778133_34778184_34780291
ENSMUSG00000026873.10_1	chr2	-	3786	15	NIC	ENSMUSG00000026873.10	novel	3741	15	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	2	4	junction_14	6.44125732434028	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAATGTAAGCGTGTCCT	3639	False	NA	-23	True	ATTAAA	-22	NA	34804036	34783774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_34786074_34787068_34787165_34788085_34788172_34788935_34789024_34789594_34789757_34791071_34791140_34793147_34793269_34793363_34793433_34794066_34794163_34795461_34795611_34796469_34796571_34797016_34797113_34801175_34801258_34801628_34801818_34803952
ENSMUSG00000026873.10_2	chr2	-	3797	15	FSM	ENSMUSG00000026873.10	ENSMUST00000028232.7	3741	15	-60	4	-10	-4	multi-exon	FALSE	canonical	3	18	junction_3	4.03871569806491	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTAAGCGTGTCCTTG	3627	False	NA	-21	True	ATTAAA	-24	NA	34804048	34783772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34786074_34787068_34787165_34788085_34788172_34788935_34789024_34789594_34789757_34791071_34791140_34793147_34793269_34793363_34793433_34794066_34794163_34795461_34795611_34796469_34796571_34797016_34797113_34801175_34801258_34801628_34801815_34803952
ENSMUSG00000026873.10_3	chr2	-	3888	15	NNC	ENSMUSG00000026873.10	novel	3741	15	NA	NA	-1019	-8	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	7.07863990164374	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTACAATGTAAGCGTGTC	2618	False	NA	-25	True	ATTAAA	-20	NA	34805057	34783776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_34786074_34787068_34787165_34788085_34788172_34788935_34789024_34789594_34789757_34791071_34791140_34793147_34793269_34793363_34793433_34794066_34794163_34795461_34795611_34796469_34796571_34797016_34797113_34801175_34801258_34801628_34801818_34804869
ENSMUSG00000026873.10_4	chr2	-	1880	1	ISM	ENSMUSG00000026873.10	ENSMUST00000028232.7	3741	15	18336	4	8512	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTAAGCGTGTCCTTG	4691	False	NA	-21	True	ATTAAA	-24	NA	34785652	34783772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_34783800_34785700
ENSMUSG00000026873.10_9	chr2	-	3652	14	ISM	ENSMUSG00000026873.10	ENSMUST00000028232.7	3741	15	2223	4	2223	-4	3prime_fragment	FALSE	canonical	3	18	junction_3	3.95836317854419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTAAGCGTGTCCTTG	5910	False	NA	-21	True	ATTAAA	-24	NA	34801765	34783772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_34786074_34787068_34787165_34788085_34788172_34788935_34789024_34789594_34789757_34791071_34791140_34793147_34793269_34793363_34793433_34794066_34794163_34795461_34795611_34796469_34796571_34797016_34797113_34801175_34801258_34801628
ENSMUSG00000026875.15_0	chr2	-	2095	11	FSM	ENSMUSG00000026875.15	ENSMUST00000113064.8	2325	11	199	31	9	-31	multi-exon	FALSE	canonical	1	1	junction_10	3.16385840391127	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GACAAAACAAATAACAAAAG	NA	False	NA	NA	False	NA	NA	NA	34851585	34833300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34834104_34835409_34835559_34836693_34836872_34838152_34838564_34839050_34839117_34846207_34846293_34847970_34848119_34848524_34848624_34849486_34849526_34850832_34850900_34851535
ENSMUSG00000026878.18_0	chr2	-	2925	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	143	13	-1	-13	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	1774	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTAAATTGAACATAGTT	9695	False	NA	NA	False	AATAAA	-13	NA	35090989	35070229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
ENSMUSG00000026879.15_0	chr2	+	2569	18	FSM	ENSMUSG00000026879.15	ENSMUST00000201185.4	2607	18	40	-2	11	0	multi-exon	FALSE	canonical	3	7	junction_1	7.49855810822468	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCCCAGGTGTCTCACT	NA	False	NA	NA	False	AATAAA	-17	NA	35146431	35197904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_35146486_35156831_35156916_35173916_35174122_35174685_35174841_35180344_35180507_35182598_35182749_35183489_35183580_35184946_35185080_35186136_35186226_35186377_35186594_35188806_35188941_35191477_35191569_35192502_35192674_35193179_35193355_35194275_35194401_35194592_35194671_35196557_35196619_35197508
ENSMUSG00000026879.15_2	chr2	+	2537	17	ISM	ENSMUSG00000026879.15	ENSMUST00000201185.4	2607	18	10418	-2	10349	0	3prime_fragment	FALSE	canonical	3	17	junction_1	5.90517516674992	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCCCAGGTGTCTCACT	5209	False	NA	NA	False	AATAAA	-17	NA	35156809	35197904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_35156916_35173916_35174122_35174685_35174841_35180344_35180507_35182598_35182749_35183489_35183580_35184946_35185080_35186136_35186226_35186377_35186594_35188806_35188941_35191477_35191569_35192502_35192674_35193179_35193355_35194275_35194401_35194592_35194671_35196557_35196619_35197508
ENSMUSG00000026879.15_5	chr2	+	1833	13	ISM	ENSMUSG00000026879.15	ENSMUST00000028239.8	2653	17	10285	-2	10152	2	3prime_fragment	FALSE	canonical	3	20	junction_6	5.42307313450798	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAGGTGTCTCACTGC	NA	False	NA	NA	False	AATAAA	-19	NA	35182676	35197906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_35182749_35183489_35183580_35184946_35185080_35186136_35186226_35186377_35186594_35188806_35188941_35191477_35191569_35192502_35192674_35193179_35193355_35194275_35194401_35194592_35194671_35196557_35196619_35197508
ENSMUSG00000026879.15_6	chr2	+	2646	17	FSM	ENSMUSG00000026879.15	ENSMUST00000028239.8	2653	17	8	-1	8	1	multi-exon	FALSE	canonical	1	1	junction_1	8.42591797669548	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCCAGGTGTCTCACTG	NA	False	NA	NA	False	AATAAA	-18	NA	35172399	35197905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_35172614_35173916_35174122_35174685_35174841_35180344_35180507_35182598_35182749_35183489_35183580_35184946_35185080_35186136_35186226_35186377_35186594_35188806_35188941_35191477_35191569_35192502_35192674_35193179_35193355_35194275_35194401_35194592_35194671_35196557_35196619_35197508
ENSMUSG00000026879.15_7	chr2	+	2380	16	ISM	ENSMUSG00000026879.15	ENSMUST00000028239.8	2653	17	1574	2	1441	0	3prime_fragment	FALSE	canonical	3	20	junction_9	5.40945674002688	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCCCCAGGTGTCTCA	NA	False	NA	NA	False	AATAAA	-15	NA	35173965	35197902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_35174122_35174685_35174841_35180344_35180507_35182598_35182749_35183489_35183580_35184946_35185080_35186136_35186226_35186377_35186594_35188806_35188941_35191477_35191569_35192502_35192674_35193179_35193355_35194275_35194401_35194592_35194671_35196557_35196619_35197508
ENSMUSG00000026879.15_8	chr2	+	1748	12	ISM	ENSMUSG00000026879.15	ENSMUST00000028239.8	2653	17	11107	2	10974	0	3prime_fragment	FALSE	canonical	3	20	junction_5	5.56108081533714	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCCCCAGGTGTCTCA	NA	False	NA	NA	False	AATAAA	-15	NA	35183498	35197902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_35183580_35184946_35185080_35186136_35186226_35186377_35186594_35188806_35188941_35191477_35191569_35192502_35192674_35193179_35193355_35194275_35194401_35194592_35194671_35196557_35196619_35197508
ENSMUSG00000026880.12_0	chr2	-	2805	7	FSM	ENSMUSG00000026880.12	ENSMUST00000028241.7	2787	7	-23	5	-23	-5	multi-exon	FALSE	canonical	3	37	junction_2	5.5876848714134	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCGACTCTGTGAGTCTTG	NA	False	NA	-5	True	AATAAA	-15	NA	35227011	35204002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_35206068_35210342_35210478_35211494_35211699_35213675_35213759_35215325_35215399_35216432_35216537_35226870
ENSMUSG00000026880.12_1	chr2	-	1608	1	ISM	ENSMUSG00000026880.12	ENSMUST00000028241.7	2787	7	21378	5	4907	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCGACTCTGTGAGTCTTG	NA	False	NA	-5	True	AATAAA	-15	NA	35205610	35204002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_35204000_35205600
ENSMUSG00000026883.18_26	chr2	+	6483	16	FSM	ENSMUSG00000026883.18	ENSMUST00000091010.12	6455	16	-23	-5	-23	0	multi-exon	FALSE	canonical	3	22	junction_1	68.7589670919769	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGACTTGCCTTTCTT	8499	False	NA	9	True	ATTAAA	-19	NA	35512025	35621004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_35512296_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
ENSMUSG00000026883.18_34	chr2	+	5283	15	ISM	ENSMUSG00000026883.18	ENSMUST00000112986.9	5580	17	103069	3	-15	-1	3prime_fragment	FALSE	canonical	3	47	junction_14	55.3541934698165	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTGACTTGCCTTTCT	NA	False	NA	8	True	ATTAAA	-18	NA	35551346	35621003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069_35618141_35619122
ENSMUSG00000026883.18_35	chr2	+	6202	14	NIC	ENSMUSG00000026883.18	novel	6219	15	NA	NA	-18	-1	intron_retention	FALSE	canonical	3	43	junction_9	57.3698681813714	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTGACTTGCCTTTCT	NA	False	NA	8	True	ATTAAA	-18	NA	35551343	35621003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609930_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
ENSMUSG00000026883.18_37	chr2	+	6260	14	ISM	ENSMUSG00000026883.18	ENSMUST00000091010.12	6455	16	39303	-4	-10	-1	3prime_fragment	FALSE	canonical	3	179	junction_9	30.3936695370762	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTGACTTGCCTTTCT	NA	False	NA	8	True	ATTAAA	-18	NA	35551351	35621003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
ENSMUSG00000026883.18_56	chr2	+	6459	14	FSM	ENSMUSG00000026883.18	ENSMUST00000065001.12	6392	14	-67	0	-67	0	multi-exon	FALSE	canonical	3	30	junction_1	58.8774677870724	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGACTTGCCTTTCTT	312	False	NA	9	True	ATTAAA	-19	NA	35581938	35621004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_35582423_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
ENSMUSG00000026883.18_72	chr2	+	3950	5	ISM	ENSMUSG00000026883.18	ENSMUST00000112983.8	6051	14	23429	1	9834	-1	3prime_fragment	FALSE	canonical	3	215	junction_1	9.23309265630969	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTGACTTGCCTTTCT	NA	False	NA	8	True	ATTAAA	-18	NA	35610172	35621003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
ENSMUSG00000026883.18_75	chr2	+	3161	3	ISM	ENSMUSG00000026883.18	ENSMUST00000156669.2	4014	11	12753	7	12753	0	intron_retention	FALSE	canonical	3	229	junction_2	2.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAGCCTGACTTGCCT	NA	False	NA	4	True	ATTAAA	-14	NA	35613091	35620999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_35613235_35617437_35617526_35618069
ENSMUSG00000026883.18_78	chr2	+	1839	1	ISM	ENSMUSG00000026883.18	ENSMUST00000112986.9	5580	17	170887	3	18826	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTGACTTGCCTTTCT	NA	False	NA	8	True	ATTAAA	-18	NA	35619164	35621003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_35619200_35621000
ENSMUSG00000026887.10_0	chr2	+	1289	7	FSM	ENSMUSG00000026887.10	ENSMUST00000028250.9	2623	7	273	1061	28	-1061	multi-exon	FALSE	canonical	3	141	junction_1	20.1941960858945	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAAGAAAGATAGAGTGG	NA	False	NA	16	True	AATAAA	-17	NA	36026673	36079598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_36026712_36031457_36031670_36037914_36038071_36043604_36043724_36049610_36049703_36067126_36067287_36079086
ENSMUSG00000026887.10_4	chr2	+	1247	6	ISM	ENSMUSG00000026887.10	ENSMUST00000028250.9	2623	7	5056	1066	4811	-1066	3prime_fragment	FALSE	canonical	3	148	junction_5	18.0288657435791	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACCACAGAAGAAAGATAG	NA	False	NA	11	True	AATAAA	-12	NA	36031456	36079593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_36031670_36037914_36038071_36043604_36043724_36049610_36049703_36067126_36067287_36079086
ENSMUSG00000026888.15_0	chr2	-	1980	14	FSM	ENSMUSG00000026888.15	ENSMUST00000028252.14	1986	14	-5	11	-5	-11	multi-exon	FALSE	canonical	1	2	junction_8	3.05182068075037	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAATAGACTCGTGT	NA	False	NA	NA	False	ATTAAA	-6	NA	64853131	64742830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_64743198_64745059_64745154_64747172_64747261_64747378_64747452_64747542_64747660_64753880_64753962_64760243_64760340_64760529_64760641_64763563_64763702_64766760_64766836_64768712_64768835_64783905_64784063_64851430_64851564_64852803
ENSMUSG00000026889.13_1	chr2	-	2431	6	FSM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	182	4	-15	-4	multi-exon	FALSE	canonical	3	240	junction_3	16.6300932047899	387	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCTATGTGGTCTTATT	NA	False	NA	-27	True	AATAAA	-12	NA	36026603	36006094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
ENSMUSG00000026890.20_0	chr2	-	2375	3	ISM	ENSMUSG00000026890.20	ENSMUST00000136821.9	825	5	2870	-1724	2870	-6	3prime_fragment	FALSE	canonical	3	7	junction_1	4	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCCAGAATGCCATGGAA	NA	False	NA	NA	False	AATAAA	-33	NA	35981415	35971971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_35974088_35980973_35981149_35981331
ENSMUSG00000026890.20_3	chr2	-	2472	4	ISM	ENSMUSG00000026890.20	ENSMUST00000112961.10	3292	9	12660	11	2873	-10	3prime_fragment	FALSE	canonical	1	1	junction_2	6.37704215656966	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAACCCAGAATGCCAT	NA	False	NA	NA	False	AATAAA	-29	NA	35981412	35971975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_35974088_35977379_35977484_35980973_35981149_35981331
ENSMUSG00000026893.5_0	chr2	+	2709	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	24	597	24	-597	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATTTGTTACATATAT	NA	False	NA	27	True	AATAAA	-35	NA	62494652	62523856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
ENSMUSG00000026893.5_17	chr2	+	1838	1	ISM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	27859	128	5946	-128	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATGTGCTTTTTTAAAT	NA	False	NA	0	True	AATAAA	-12	NA	62522487	62524325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_62522500_62524300
ENSMUSG00000026895.8_0	chr2	-	762	4	FSM	ENSMUSG00000026895.8	ENSMUST00000070112.6	861	4	91	8	91	-8	multi-exon	FALSE	canonical	3	1222	junction_2	59.9184631163235	420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAACAGTTGTGTTTT	NA	False	NA	-9	True	ATTAAA	-7	NA	35939327	35926345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_35926654_35929723_35929890_35934361_35934526_35939203
ENSMUSG00000026914.16_0	chr2	+	1471	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	64	6	-2	-6	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	1315	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCATGTCTCCCGAGGTC	8611	False	NA	25	True	AATAAA	-11	NA	61542101	61630714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
ENSMUSG00000026915.17_1	chr2	-	2715	18	FSM	ENSMUSG00000026915.17	ENSMUST00000072186.12	3144	18	-69	498	4	-498	multi-exon	FALSE	canonical	3	591	junction_8	55.9640270025228	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACTGCCTGGTTCCTGA	NA	False	NA	-1	True	AATAAA	-19	NA	37593356	37473665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_37474119_37476521_37476567_37480668_37480793_37486715_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593203
ENSMUSG00000026915.17_4	chr2	-	2753	18	NIC	ENSMUSG00000026915.17	novel	3144	18	NA	NA	1	-499	combination_of_known_junctions	FALSE	canonical	3	115	junction_17	145.431799495496	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTACTGCCTGGTTCCTG	NA	False	NA	-2	True	AATAAA	-18	NA	37593870	37473666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_37474119_37476521_37476567_37480668_37480793_37486715_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593678
ENSMUSG00000026917.16_0	chr2	+	2846	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	42	2	42	-2	multi-exon	FALSE	canonical	3	1324	junction_4	114.959164347413	2682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGTTCCATATAAGTT	NA	False	NA	31	True	AATAAA	-17	NA	27405210	27426545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
ENSMUSG00000026917.16_69	chr2	+	1193	1	ISM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	20184	2	7569	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGTTCCATATAAGTT	NA	False	NA	31	True	AATAAA	-17	NA	27425352	27426545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_27425400_27426500
ENSMUSG00000026918.17_0	chr2	-	5223	12	FSM	ENSMUSG00000026918.17	ENSMUST00000077737.13	5272	12	37	12	4	9	multi-exon	FALSE	canonical	3	192	junction_7	30.2258714644446	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAAAGAAGATTGTGTCT	NA	False	NA	14	True	AATAAA	-2	NA	27365661	27335602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
ENSMUSG00000026918.17_2	chr2	-	2018	1	ISM	ENSMUSG00000026918.17	ENSMUST00000028282.15	5419	12	27794	8	16512	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAGATTGTGTCTGTGT	NA	False	NA	-14	True	AATAAA	-6	NA	27337616	27335598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_27335600_27337600
ENSMUSG00000026918.17_4	chr2	-	5139	11	ISM	ENSMUSG00000026918.17	ENSMUST00000028282.15	5419	12	11217	11	-65	10	3prime_fragment	TRUE	canonical	3	192	junction_7	31.5949363031483	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAAAGAAGATTGTGTCTG	NA	False	NA	15	True	AATAAA	-3	NA	27354193	27335601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900
ENSMUSG00000026918.17_7	chr2	-	5268	13	FSM	ENSMUSG00000026918.17	ENSMUST00000113941.9	5289	13	26	-5	6	5	multi-exon	FALSE	canonical	2	24	junction_5	87.0507514805779	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGGGAAAGAAGATTGT	NA	False	NA	10	True	NA	NA	NA	27365659	27335606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27343411_27343463_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
ENSMUSG00000026921.21_0	chr2	+	1156	9	FSM	ENSMUSG00000026921.21	ENSMUST00000239075.2	1163	9	7	0	7	0	multi-exon	FALSE	canonical	3	256	junction_1	46.4239970273995	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	179	False	NA	12	True	AATAAA	-12	NA	26476648	26482693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
ENSMUSG00000026921.21_1	chr2	+	1116	8	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_6	112.260811487885	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	154	False	NA	12	True	AATAAA	-12	NA	26476623	26482693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26482129_26482293_26482429
ENSMUSG00000026921.21_15	chr2	+	1110	8	ISM	ENSMUSG00000026921.21	ENSMUST00000150404.10	892	9	501	-236	-291	-2	3prime_fragment	FALSE	canonical	3	262	junction_6	44.7227285502527	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTGTTGTCAATGGGGG	2586	False	NA	10	True	AATAAA	-10	NA	26479055	26482691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
ENSMUSG00000026921.21_2	chr2	+	1118	9	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	105.177751330783	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	178	False	NA	12	True	AATAAA	-12	NA	26476647	26482693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482254_26482429
ENSMUSG00000026921.21_7	chr2	+	1122	9	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	104.879692982007	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	182	False	NA	12	True	AATAAA	-12	NA	26476651	26482693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482262_26482429
ENSMUSG00000026922.14_0	chr2	-	1373	6	FSM	ENSMUSG00000026922.14	ENSMUST00000028286.12	1489	6	89	27	-32	-27	multi-exon	FALSE	canonical	0	0	junction_5	292.487674954006	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGACCAGAGGTCTCTT	9570	False	NA	-26	True	TATAAA	-18	NA	26494255	26483095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494040
ENSMUSG00000026922.14_1	chr2	-	1278	6	FSM	ENSMUSG00000026922.14	ENSMUST00000131940.8	1273	6	-32	27	-32	-27	multi-exon	FALSE	canonical	3	206	junction_5	210.357219985433	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGACCAGAGGTCTCTT	9570	False	NA	-26	True	TATAAA	-18	NA	26494255	26483095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494135
ENSMUSG00000026923.16_0	chr2	-	8167	34	FSM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	6	1315	6	-1315	multi-exon	FALSE	canonical	3	26	junction_31	9.72382644510991	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATGAACAAGGATTCA	NA	False	NA	NA	False	NA	NA	NA	26393828	26349229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721_26354018_26354817_26354984_26355074_26355163_26355361_26355579_26356478_26356628_26357640_26358043_26358243_26358816_26359616_26359730_26359812_26360071_26360285_26360419_26360833_26361019_26361163_26361318_26362082_26362285_26362795_26363025_26363692_26363846_26364132_26364253_26366085_26366200_26366359_26366506_26366958_26367152_26367891_26368003_26368081_26368316_26368618_26368733_26369458_26369573_26369882_26370069_26370235_26370392_26370985_26371220_26371582_26371706_26374279_26374619_26375198_26375462_26391892_26391972_26393509
ENSMUSG00000026923.16_1	chr2	-	3746	5	ISM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	38883	4	1224	-4	3prime_fragment	FALSE	canonical	3	49	junction_3	3.08220700148449	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTTGGAGTGTGGTTTG	5942	False	NA	-4	True	AATAAA	-30	NA	26354951	26347918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721_26354018_26354817
ENSMUSG00000026923.16_14	chr2	-	8740	31	ISM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	19290	7	-14034	-7	3prime_fragment	TRUE	canonical	3	30	junction_10	9.05790017363603	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAAACTTGGAGTGTGGT	6083	False	NA	-7	True	AATAAA	-27	NA	26374544	26347921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721_26354018_26354817_26354984_26355074_26355163_26355361_26355579_26356478_26356628_26357640_26358043_26358243_26358816_26359616_26359730_26359812_26360071_26360285_26360419_26360833_26361019_26361163_26361318_26362082_26362285_26362795_26363025_26363692_26363846_26364132_26364253_26366085_26366200_26366359_26366506_26366958_26367152_26367891_26368003_26368081_26368316_26368618_26368733_26369458_26369573_26369882_26370069_26370235_26370392_26370985_26371220_26371582_26371706_26374279
ENSMUSG00000026923.16_15	chr2	-	4792	10	ISM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	35433	4	-776	-4	3prime_fragment	FALSE	canonical	3	44	junction_6	5.62621728940985	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTTGGAGTGTGGTTTG	2492	False	NA	-4	True	AATAAA	-30	NA	26358401	26347918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721_26354018_26354817_26354984_26355074_26355163_26355361_26355579_26356478_26356628_26357640_26358043_26358243
ENSMUSG00000026923.16_16	chr2	-	4468	9	ISM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	35953	9	-256	-9	3prime_fragment	FALSE	canonical	3	44	junction_6	3.96665791315561	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCTAAACTTGGAGTGTG	3012	False	NA	-9	True	AATAAA	-25	NA	26357881	26347923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721_26354018_26354817_26354984_26355074_26355163_26355361_26355579_26356478_26356628_26357640
ENSMUSG00000026923.16_2	chr2	-	2627	1	ISM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	43289	4	2214	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTTGGAGTGTGGTTTG	6326	False	NA	-4	True	AATAAA	-30	NA	26350545	26347918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26347900_26350500
ENSMUSG00000026923.16_3	chr2	-	3427	4	ISM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	40003	3	-1072	-3	3prime_fragment	TRUE	canonical	3	49	junction_3	2.94392028877595	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGGAGTGTGGTTTGG	7062	False	NA	-3	True	AATAAA	-31	NA	26353831	26347917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721
ENSMUSG00000026923.16_34	chr2	-	4607	15	ISM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	32608	1355	-716	-1355	3prime_fragment	FALSE	canonical	3	30	junction_10	9.60362389084114	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATTTTCCTGGTCAGGGT	8324	False	NA	NA	False	AATAAA	-16	NA	26361226	26349269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721_26354018_26354817_26354984_26355074_26355163_26355361_26355579_26356478_26356628_26357640_26358043_26358243_26358816_26359616_26359730_26359812_26360071_26360285_26360419_26360833_26361019_26361163
ENSMUSG00000026923.16_5	chr2	-	3992	7	ISM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	38340	11	681	-11	3prime_fragment	FALSE	canonical	3	44	junction_6	3.90156663690654	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGCTAAACTTGGAGTG	5399	False	NA	-11	True	AATAAA	-23	NA	26355494	26347925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721_26354018_26354817_26354984_26355074_26355163_26355361
ENSMUSG00000026923.16_9	chr2	-	4183	8	ISM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	37247	13	79	-13	3prime_fragment	FALSE	canonical	3	44	junction_6	3.64215679542342	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTTGCTAAACTTGGAG	4306	False	NA	-13	True	AATAAA	-21	NA	26356587	26347927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721_26354018_26354817_26354984_26355074_26355163_26355361_26355579_26356478
ENSMUSG00000026924.18_0	chr2	-	8770	31	FSM	ENSMUSG00000026924.18	ENSMUST00000114082.9	8797	31	16	11	2	-9	multi-exon	FALSE	canonical	3	86	junction_3	26.343373613365	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAACTTAATTTATGGCT	NA	False	NA	-11	True	AATAAA	-16	NA	26335210	26299453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26300966_26302847_26302926_26303690_26303751_26304382_26304458_26305318_26305414_26305645_26305784_26306128_26306241_26306382_26306440_26306645_26306724_26309632_26309783_26311385_26311469_26312019_26312266_26313465_26313650_26313894_26314009_26314428_26314570_26315205_26315312_26315487_26315600_26315778_26315897_26316091_26316174_26316462_26316561_26318151_26318398_26318826_26318966_26319073_26319136_26319385_26319529_26320088_26320264_26320405_26320605_26321116_26321241_26323342_26323441_26325923_26326061_26328398_26332083_26335086
ENSMUSG00000026924.18_2	chr2	-	8709	30	FSM	ENSMUSG00000026924.18	ENSMUST00000091252.5	8737	30	19	9	3	-9	multi-exon	FALSE	canonical	3	97	junction_2	23.0104665219992	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAACTTAATTTATGGCT	NA	False	NA	-11	True	AATAAA	-16	NA	26335209	26299453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26300966_26302847_26302926_26304382_26304458_26305318_26305414_26305645_26305784_26306128_26306241_26306382_26306440_26306645_26306724_26309632_26309783_26311385_26311469_26312019_26312266_26313465_26313650_26313894_26314009_26314428_26314570_26315205_26315312_26315487_26315600_26315778_26315897_26316091_26316174_26316462_26316561_26318151_26318398_26318826_26318966_26319073_26319136_26319385_26319529_26320088_26320264_26320405_26320605_26321116_26321241_26323342_26323441_26325923_26326061_26328398_26332083_26335086
ENSMUSG00000026924.18_32	chr2	-	6570	30	ISM	ENSMUSG00000026924.18	ENSMUST00000114082.9	8797	31	5218	13	-241	-11	3prime_fragment	FALSE	canonical	3	86	junction_3	26.7850917769235	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGTAACTTAATTTATGG	NA	False	NA	-13	True	AATAAA	-14	NA	26330008	26299455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26300966_26302847_26302926_26303690_26303751_26304382_26304458_26305318_26305414_26305645_26305784_26306128_26306241_26306382_26306440_26306645_26306724_26309632_26309783_26311385_26311469_26312019_26312266_26313465_26313650_26313894_26314009_26314428_26314570_26315205_26315312_26315487_26315600_26315778_26315897_26316091_26316174_26316462_26316561_26318151_26318398_26318826_26318966_26319073_26319136_26319385_26319529_26320088_26320264_26320405_26320605_26321116_26321241_26323342_26323441_26325923_26326061_26328398
ENSMUSG00000026924.18_34	chr2	-	6641	29	ISM	ENSMUSG00000026924.18	ENSMUST00000091252.5	8737	30	5091	9	-370	-9	3prime_fragment	FALSE	canonical	3	97	junction_2	23.3889855029487	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAACTTAATTTATGGCT	NA	False	NA	-11	True	AATAAA	-16	NA	26330137	26299453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26300966_26302847_26302926_26304382_26304458_26305318_26305414_26305645_26305784_26306128_26306241_26306382_26306440_26306645_26306724_26309632_26309783_26311385_26311469_26312019_26312266_26313465_26313650_26313894_26314009_26314428_26314570_26315205_26315312_26315487_26315600_26315778_26315897_26316091_26316174_26316462_26316561_26318151_26318398_26318826_26318966_26319073_26319136_26319385_26319529_26320088_26320264_26320405_26320605_26321116_26321241_26323342_26323441_26325923_26326061_26328398
ENSMUSG00000026924.18_66	chr2	-	6063	3	ISM	ENSMUSG00000026924.18	ENSMUST00000114082.9	8797	31	17	24362	3	2189	5prime_fragment	FALSE	canonical	3	167	junction_2	25	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26335209	26323804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26326061_26328398_26332083_26335086
ENSMUSG00000026925.17_1	chr2	-	3320	10	FSM	ENSMUSG00000026925.17	ENSMUST00000145701.8	4147	10	19	808	3	-3	multi-exon	FALSE	canonical	3	30	junction_1	7.99228022593531	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCTTTCTGGCCAAAGA	1005	False	NA	0	True	AATAAA	-20	NA	26299193	26287068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26287984_26288567_26288705_26289244_26289361_26289424_26289587_26290047_26290156_26290384_26290505_26290897_26291023_26291612_26291711_26292111_26292236_26297778
ENSMUSG00000026925.17_21	chr2	-	3391	9	NIC	ENSMUSG00000026925.17	novel	4147	10	NA	NA	-4	-3	intron_retention	FALSE	canonical	3	30	junction_1	7.94414092271782	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCTTTCTGGCCAAAGA	998	False	NA	0	True	AATAAA	-20	NA	26299200	26287068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26287984_26288567_26288705_26289244_26289587_26290047_26290156_26290384_26290505_26290897_26291023_26291612_26291711_26292111_26292236_26297778
ENSMUSG00000026925.17_5	chr2	-	3107	11	NIC	ENSMUSG00000026925.17	novel	2790	11	NA	NA	24	-3	combination_of_known_junctions	FALSE	canonical	3	5	junction_10	12.6826653350153	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCTTTCTGGCCAAAGA	1026	False	NA	0	True	AATAAA	-20	NA	26299172	26287068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26287984_26288567_26288705_26289244_26289361_26289424_26289587_26290047_26290156_26290384_26290505_26290897_26291023_26291612_26291711_26292111_26292236_26297778_26298822_26299013
ENSMUSG00000026926.15_1	chr2	+	3114	13	FSM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	14	7	-1	-7	multi-exon	FALSE	canonical	3	1351	junction_8	105.114619979018	2304	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTAGAGTGGATGCCCC	658	False	NA	12	True	AATAAA	-9	NA	26279364	26287127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
ENSMUSG00000026927.18_1	chr2	-	1942	8	FSM	ENSMUSG00000026927.18	ENSMUST00000077983.13	1955	8	10	3	4	-2	multi-exon	FALSE	canonical	3	120	junction_7	82.5556089640708	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTAGACTGTCTTGTCA	NA	False	NA	-6	True	AATAAA	-10	NA	26279299	26272816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26279160
ENSMUSG00000026927.18_12	chr2	-	2239	9	ISM	ENSMUSG00000026927.18	ENSMUST00000114102.10	2193	10	29	8	4	-7	intron_retention	FALSE	canonical	3	96	junction_8	85.196739227508	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATCATTTAGACTGTCT	NA	False	NA	-11	True	AATAAA	-5	NA	26279299	26272821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26278927
ENSMUSG00000026927.18_13	chr2	-	2500	8	NIC	ENSMUSG00000026927.18	novel	2193	10	NA	NA	0	-3	intron_retention	FALSE	canonical	3	27	junction_7	113.093784451811	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGACTGTCTTGTC	NA	False	NA	-7	True	AATAAA	-9	NA	26279295	26272817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278597
ENSMUSG00000026927.18_3	chr2	-	2012	9	FSM	ENSMUSG00000026927.18	ENSMUST00000028293.12	2031	9	16	3	3	-2	multi-exon	FALSE	canonical	3	146	junction_8	70.8147892392543	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTAGACTGTCTTGTCA	NA	False	NA	-6	True	AATAAA	-10	NA	26279300	26272816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26279160
ENSMUSG00000026927.18_7	chr2	-	2162	10	FSM	ENSMUSG00000026927.18	ENSMUST00000114102.10	2193	10	28	3	3	-2	multi-exon	FALSE	canonical	3	51	junction_9	111.566621850404	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTAGACTGTCTTGTCA	NA	False	NA	-6	True	AATAAA	-10	NA	26279300	26272816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26278927_26279078_26279160
ENSMUSG00000026928.15_2	chr2	-	1093	9	ISM	ENSMUSG00000026928.15	ENSMUST00000100303.10	1947	12	2117	13	2117	-2	3prime_fragment	FALSE	canonical	3	13	junction_2	6.02987354759617	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGTTGGTTGGATATG	NA	False	NA	NA	False	AATAAA	-15	NA	26247642	26242200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26242424_26242496_26242574_26242952_26243027_26244368_26244418_26244841_26244884_26245344_26245537_26246769_26246896_26247196_26247341_26247476
ENSMUSG00000026928.15_3	chr2	-	1014	8	NIC	ENSMUSG00000026928.15	novel	1947	12	NA	NA	2118	-6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	9.74574737189174	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAGCCTGTTGGTTGGA	NA	False	NA	NA	False	AATAAA	-11	NA	26247641	26242204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26242424_26242496_26242574_26244368_26244418_26244841_26244884_26245344_26245537_26246769_26246896_26247196_26247341_26247476
ENSMUSG00000026930.16_0	chr2	+	3355	14	FSM	ENSMUSG00000026930.16	ENSMUST00000066936.9	3384	14	28	1	28	-1	multi-exon	FALSE	canonical	1	3	junction_2	5.66521619677599	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGGCTTCTGTTGGAAT	NA	False	NA	NA	False	AATAAA	-14	NA	26205554	26238248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26205733_26212425_26212648_26213519_26213656_26213900_26214044_26214424_26214549_26214809_26214926_26215348_26215505_26216225_26216335_26217303_26217428_26229647_26229719_26230416_26230597_26234613_26234771_26235162_26235372_26236818
ENSMUSG00000026930.16_1	chr2	+	3197	13	FSM	ENSMUSG00000026930.16	ENSMUST00000078616.12	3127	13	-76	6	1	-6	multi-exon	FALSE	canonical	1	3	junction_2	5.58954877924467	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGAGTGTGGCTTCTGTT	NA	False	NA	NA	False	AATAAA	-9	NA	26205527	26238243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26205733_26212425_26212648_26213519_26213656_26213900_26214044_26214424_26214549_26214809_26214926_26215348_26215505_26216225_26216335_26217303_26217428_26229647_26229719_26234613_26234771_26235162_26235372_26236818
ENSMUSG00000026930.16_14	chr2	+	2824	3	FSM	ENSMUSG00000026930.16	ENSMUST00000142057.2	834	3	-664	-1326	-664	-1	multi-exon	FALSE	canonical	3	17	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGGCTTCTGTTGGAAT	NA	False	NA	NA	False	AATAAA	-14	NA	26233585	26238248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26234771_26235162_26235372_26236818
ENSMUSG00000026930.16_22	chr2	+	1944	4	ISM	ENSMUSG00000026930.16	ENSMUST00000145884.8	2717	11	16841	6	984	-6	3prime_fragment	FALSE	canonical	2	7	junction_1	5.8878405775519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGAGTGTGGCTTCTGTT	NA	False	NA	NA	False	AATAAA	-9	NA	26230443	26238243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_26230597_26234613_26234771_26235162_26235372_26236818
ENSMUSG00000026930.16_7	chr2	+	1996	4	FSM	ENSMUSG00000026930.16	ENSMUST00000147873.8	977	4	-60	-959	-60	-3	multi-exon	FALSE	canonical	2	4	junction_1	7.25718035235908	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTGGCTTCTGTTGGA	NA	False	NA	NA	False	AATAAA	-12	NA	26232240	26238246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26232443_26234613_26234771_26235162_26235372_26236818
ENSMUSG00000026932.15_0	chr2	-	3405	1	ISM	ENSMUSG00000026932.15	ENSMUST00000114159.9	6675	6	33237	1	3550	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTCCTGACCTTTGCTT	NA	False	NA	-1	True	AATAAA	-15	NA	25948952	25945547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25945500_25949000
ENSMUSG00000026932.15_3	chr2	-	2796	7	NIC	ENSMUSG00000026932.15	novel	6378	6	NA	NA	-9	2049	intron_retention	FALSE	canonical	2	11	junction_5	12.0611866009204	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAGAGAAAAAAAAAAAAA	8920	False	NA	NA	False	NA	NA	NA	26012809	25949026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_25979554_25980173_25980253_25980495_26012700
ENSMUSG00000026932.15_4	chr2	-	2886	6	FSM	ENSMUSG00000026932.15	ENSMUST00000028300.6	6378	6	12	3480	12	2049	multi-exon	FALSE	canonical	3	39	junction_4	3.79473319220206	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAGAGAAAAAAAAAAAAA	8911	False	NA	NA	False	NA	NA	NA	26012818	25949026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_25979554_25980495_26012700
ENSMUSG00000026932.15_5	chr2	-	1952	5	NIC	ENSMUSG00000026932.15	novel	6378	6	NA	NA	9	2052	intron_retention	FALSE	canonical	2	7	junction_4	16.3458710382775	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAGAAAAAAAAAAAAAAAA	8908	False	NA	NA	False	NA	NA	NA	26012821	25949023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_26012700
ENSMUSG00000026933.18_0	chr2	-	6448	17	FSM	ENSMUSG00000026933.18	ENSMUST00000114167.9	7981	17	25	1508	25	185	multi-exon	FALSE	canonical	3	23	junction_4	28.655006107136	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCTGTGTGTCTTCATT	NA	False	NA	-104	True	ATTAAA	-23	NA	25873269	25818357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25820041_25823602_25823722_25824231_25824348_25825473_25825574_25825861_25826071_25826526_25826664_25827957_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25842689_25842832_25846258_25846340_25855674_25855837_25856697_25856961_25872793
ENSMUSG00000026933.18_1	chr2	-	3555	7	NIC	ENSMUSG00000026933.18	novel	5464	15	NA	NA	-3473	284	combination_of_known_junctions	FALSE	canonical	3	102	junction_4	19.2006944318862	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCATGTGTGTGGTTGTC	NA	False	NA	-5	True	AATAAA	-21	NA	25829046	25818258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25820041_25823602_25823722_25824231_25824348_25825473_25825577_25825861_25826071_25826526_25826664_25827957
ENSMUSG00000026933.18_11	chr2	-	2229	5	NIC	ENSMUSG00000026933.18	novel	5464	15	NA	NA	-396	285	combination_of_known_junctions	FALSE	canonical	3	102	junction_4	20.1370305656023	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATGTGTGTGGTTGTCA	NA	False	NA	-4	True	AATAAA	-22	NA	25825969	25818257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25820041_25823602_25823722_25824231_25824348_25825473_25825577_25825861
ENSMUSG00000026933.18_2	chr2	-	6547	17	NIC	ENSMUSG00000026933.18	novel	7981	17	NA	NA	27	283	combination_of_known_junctions	FALSE	canonical	3	81	junction_13	18.9348182919721	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACCATGTGTGTGGTTGT	NA	False	NA	-6	True	AATAAA	-20	NA	25873267	25818259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25820041_25823602_25823722_25824231_25824348_25825473_25825577_25825861_25826071_25826526_25826664_25827957_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25842689_25842832_25846258_25846340_25855674_25855837_25856697_25856961_25872793
ENSMUSG00000026933.18_3	chr2	-	1159	1	ISM	ENSMUSG00000026933.18	ENSMUST00000114167.9	7981	17	53878	1408	5210	285	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATGTGTGTGGTTGTCA	2698	False	NA	-4	True	AATAAA	-22	NA	25819416	25818257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25818300_25819400
ENSMUSG00000026933.18_5	chr2	-	2957	7	ISM	ENSMUSG00000026933.18	ENSMUST00000114167.9	7981	17	44191	2061	-3530	-368	3prime_fragment	FALSE	canonical	3	23	junction_4	42.9084943675362	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTTGGCTGCCGGTTCCT	NA	False	NA	NA	False	GATAAA	-31	NA	25829103	25818910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25820041_25823602_25823722_25824231_25824348_25825473_25825574_25825861_25826071_25826526_25826664_25827957
ENSMUSG00000026933.18_8	chr2	-	6395	16	NIC	ENSMUSG00000026933.18	novel	7981	17	NA	NA	29	275	combination_of_known_junctions	FALSE	canonical	2	13	junction_12	30.5170262130649	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCTGTTAACCATGTGT	NA	False	NA	-14	True	AATAAA	-12	NA	25873265	25818267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25820041_25823602_25823722_25824231_25824348_25825473_25825577_25825861_25826071_25826526_25826664_25827957_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25846258_25846340_25855674_25855837_25856697_25856961_25872793
ENSMUSG00000026939.13_0	chr2	-	755	5	FSM	ENSMUSG00000026939.13	ENSMUST00000142087.2	795	5	4	36	4	1	multi-exon	FALSE	canonical	3	29	junction_4	9.85837207656518	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGCTCTGAAGCAATT	NA	False	NA	-5	True	AATAAA	-19	NA	25512013	25510114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619_25511687_25511945
ENSMUSG00000026941.17_7	chr2	-	604	3	FSM	ENSMUSG00000036504.7	ENSMUST00000039156.7	937	3	332	1	-14	-1	multi-exon	FALSE	canonical	3	774	junction_2	2.5	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCCCTGACTTGTGTCTTG	5532	False	NA	-9	True	ATTAAA	-19	NA	25464904	25463442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25463712_25464199_25464325_25464694
ENSMUSG00000026942.14_0	chr2	-	2128	11	FSM	ENSMUSG00000026942.14	ENSMUST00000114234.2	2151	11	23	0	23	0	multi-exon	FALSE	canonical	3	14	junction_9	38.6141165896619	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGAGTGGTGTTCATC	NA	False	NA	-18	True	ATTAAA	-13	NA	25436899	25408877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428856_25429097_25436873
ENSMUSG00000026942.14_1	chr2	-	2107	11	FSM	ENSMUSG00000026942.14	ENSMUST00000028311.13	3044	11	53	884	23	0	multi-exon	FALSE	canonical	3	80	junction_10	20.6164982477626	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGAGTGGTGTTCATC	NA	False	NA	-18	True	ATTAAA	-13	NA	25436899	25408877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428877_25429097_25436873
ENSMUSG00000026942.14_4	chr2	-	2103	10	ISM	ENSMUSG00000026942.14	ENSMUST00000114234.2	2151	11	7825	0	55	0	3prime_fragment	FALSE	canonical	3	14	junction_9	39.0681582321757	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGAGTGGTGTTCATC	NA	False	NA	-18	True	ATTAAA	-13	NA	25429097	25408877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428856
ENSMUSG00000026942.14_5	chr2	-	2082	10	ISM	ENSMUSG00000026942.14	ENSMUST00000028311.13	3044	11	7855	884	55	0	3prime_fragment	FALSE	canonical	3	106	junction_2	15.0562730456342	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGAGTGGTGTTCATC	NA	False	NA	-18	True	ATTAAA	-13	NA	25429097	25408877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428877
ENSMUSG00000026944.19_0	chr2	+	8051	48	FSM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	-26	8	-26	-8	multi-exon	TRUE	canonical	3	27	junction_14	9.25265307651151	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACCTACCTGTGGG	NA	False	NA	3	True	AATAAA	-6	NA	25318688	25338544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25318848_25322007_25322102_25323109_25323222_25323305_25323470_25323693_25323822_25323975_25324087_25324320_25324540_25324901_25325270_25325510_25325671_25326379_25326509_25326600_25326766_25326841_25326939_25327256_25327431_25327499_25327603_25327676_25327792_25327904_25328096_25328242_25328394_25328469_25328675_25328812_25328978_25329078_25329260_25329338_25329552_25330536_25330734_25330821_25331005_25331199_25331385_25331490_25331612_25331886_25332124_25332202_25332410_25332661_25332765_25332846_25333167_25333240_25333455_25333540_25333647_25333737_25333850_25333938_25334000_25334081_25334257_25334336_25334453_25334533_25334682_25334825_25334950_25335083_25335217_25335319_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
ENSMUSG00000026944.19_11	chr2	+	5149	30	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	10155	8	-2450	-8	3prime_fragment	FALSE	canonical	3	28	junction_3	8.83956622433945	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACCTACCTGTGGG	NA	False	NA	3	True	AATAAA	-6	NA	25328869	25338544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25328978_25329078_25329260_25329338_25329552_25330536_25330734_25330821_25331005_25331199_25331385_25331490_25331612_25331886_25332124_25332202_25332410_25332661_25332765_25332846_25333167_25333240_25333455_25333540_25333647_25333737_25333850_25333938_25334000_25334081_25334257_25334336_25334453_25334533_25334682_25334825_25334950_25335083_25335217_25335319_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
ENSMUSG00000026944.19_15	chr2	+	4615	27	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	11854	8	-751	-8	3prime_fragment	FALSE	canonical	3	38	junction_5	6.95303347872085	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACCTACCTGTGGG	NA	False	NA	3	True	AATAAA	-6	NA	25330568	25338544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25330734_25330821_25331005_25331199_25331385_25331490_25331612_25331886_25332124_25332202_25332410_25332661_25332765_25332846_25333167_25333240_25333455_25333540_25333647_25333737_25333850_25333938_25334000_25334081_25334257_25334336_25334453_25334533_25334682_25334825_25334950_25335083_25335217_25335319_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
ENSMUSG00000026944.19_18	chr2	+	3627	22	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	13581	12	-664	-12	3prime_fragment	FALSE	canonical	3	44	junction_3	6.68025825400007	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAAAAAGCACCTACCTG	61	False	NA	-1	True	AATAAA	-2	NA	25332295	25338540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25332410_25332661_25332765_25332846_25333167_25333240_25333455_25333540_25333647_25333737_25333850_25333938_25334000_25334081_25334257_25334336_25334453_25334533_25334682_25334825_25334950_25335083_25335217_25335319_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
ENSMUSG00000026944.19_21	chr2	+	2420	14	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	15628	8	-831	-8	3prime_fragment	FALSE	canonical	3	45	junction_10	7.5799486345077	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACCTACCTGTGGG	1538	False	NA	3	True	AATAAA	-6	NA	25334342	25338544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25334453_25334533_25334682_25334825_25334950_25335083_25335217_25335319_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
ENSMUSG00000026944.19_22	chr2	+	2303	13	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	15826	8	-633	-8	3prime_fragment	FALSE	canonical	3	45	junction_9	7.88458411500991	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACCTACCTGTGGG	1736	False	NA	3	True	AATAAA	-6	NA	25334540	25338544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25334682_25334825_25334950_25335083_25335217_25335319_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
ENSMUSG00000026944.19_24	chr2	+	1040	3	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	18273	1	1133	-1	3prime_fragment	FALSE	canonical	3	53	junction_2	9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACCTGTGGGAGCCTGT	4183	False	NA	10	True	AATAAA	-13	NA	25336987	25338551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25337128_25337211_25337413_25337852
ENSMUSG00000026944.19_36	chr2	+	5288	31	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	9867	19	-2738	-19	3prime_fragment	FALSE	canonical	3	28	junction_4	8.70765946356042	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAGCAAAAAGCAC	NA	False	NA	-8	True	NA	NA	NA	25328581	25338533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25328675_25328812_25328978_25329078_25329260_25329338_25329552_25330536_25330734_25330821_25331005_25331199_25331385_25331490_25331612_25331886_25332124_25332202_25332410_25332661_25332765_25332846_25333167_25333240_25333455_25333540_25333647_25333737_25333850_25333938_25334000_25334081_25334257_25334336_25334453_25334533_25334682_25334825_25334950_25335083_25335217_25335319_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
ENSMUSG00000026944.19_45	chr2	+	5832	34	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	8990	16	-3615	-16	3prime_fragment	FALSE	canonical	3	28	junction_7	8.49609644066669	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAGCAAAAAGCACCTA	NA	False	NA	-5	True	NA	NA	NA	25327704	25338536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25327792_25327904_25328096_25328242_25328394_25328469_25328675_25328812_25328978_25329078_25329260_25329338_25329552_25330536_25330734_25330821_25331005_25331199_25331385_25331490_25331612_25331886_25332124_25332202_25332410_25332661_25332765_25332846_25333167_25333240_25333455_25333540_25333647_25333737_25333850_25333938_25334000_25334081_25334257_25334336_25334453_25334533_25334682_25334825_25334950_25335083_25335217_25335319_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
ENSMUSG00000026944.19_50	chr2	+	1876	10	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	16634	8	175	-8	3prime_fragment	FALSE	canonical	3	45	junction_6	7.48001452431415	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACCTACCTGTGGG	2544	False	NA	3	True	AATAAA	-6	NA	25335348	25338544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
ENSMUSG00000026944.19_7	chr2	+	6837	41	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	6414	8	-6191	-8	3prime_fragment	FALSE	canonical	3	27	junction_7	9.27038294786143	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACCTACCTGTGGG	NA	False	NA	3	True	AATAAA	-6	NA	25325128	25338544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25325270_25325510_25325671_25326379_25326509_25326600_25326766_25326841_25326939_25327256_25327431_25327499_25327603_25327676_25327792_25327904_25328096_25328242_25328394_25328469_25328675_25328812_25328978_25329078_25329260_25329338_25329552_25330536_25330734_25330821_25331005_25331199_25331385_25331490_25331612_25331886_25332124_25332202_25332410_25332661_25332765_25332846_25333167_25333240_25333455_25333540_25333647_25333737_25333850_25333938_25334000_25334081_25334257_25334336_25334453_25334533_25334682_25334825_25334950_25335083_25335217_25335319_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
ENSMUSG00000026946.10_0	chr2	-	1100	9	FSM	ENSMUSG00000026946.10	ENSMUST00000145481.8	1162	9	64	-2	30	2	multi-exon	FALSE	canonical	1	2	junction_3	2.57087047515039	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTCTTCTTACTCTTTGA	8706	False	NA	NA	False	CATAAA	-19	NA	51862952	51838510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862599_51862640_51862920
ENSMUSG00000026955.14_1	chr2	+	2970	6	NIC	ENSMUSG00000026955.14	novel	3121	7	NA	NA	1	679	intron_retention	FALSE	canonical	3	105	junction_2	6.41872261435249	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCCAGCACGTCTGCATC	6697	False	NA	1	True	NA	NA	NA	25262372	25267494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_25263011_25263427_25263530_25264963_25265844_25265979_25266088_25266175_25266287_25266363
ENSMUSG00000026955.14_10	chr2	+	1581	6	FSM	ENSMUSG00000026955.14	ENSMUST00000114293.9	1600	6	16	3	12	0	multi-exon	FALSE	canonical	3	11	junction_1	40.9536323175369	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGGCTGTATTTCTCA	6682	False	NA	3	True	AGTAAA	-12	NA	25262357	25266812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25263011_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
ENSMUSG00000026955.14_3	chr2	+	2741	5	NIC	ENSMUSG00000026955.14	novel	3121	7	NA	NA	-1	1	intron_retention	FALSE	canonical	3	105	junction_1	6.34428877022476	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTGTATTTCTCATAAT	6665	False	NA	7	True	AGTAAA	-16	NA	25262340	25266816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_25263530_25264963_25265844_25265979_25266088_25266175_25266287_25266363
ENSMUSG00000026955.14_4	chr2	+	2350	7	FSM	ENSMUSG00000026955.14	ENSMUST00000028329.13	3121	7	29	742	-10	668	multi-exon	FALSE	canonical	3	90	junction_3	10.077477638554	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCCACCACACCCAGC	6686	False	NA	-10	True	NA	NA	NA	25262361	25267483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25263011_25263427_25263530_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
ENSMUSG00000026955.14_5	chr2	+	1745	6	ISM	ENSMUSG00000026955.14	ENSMUST00000028329.13	3121	7	40	1413	1	0	intron_retention	FALSE	canonical	3	90	junction_3	9.97196068985433	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGGCTGTATTTCTCA	6697	False	NA	3	True	AGTAAA	-12	NA	25262372	25266812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25263011_25263427_25263530_25264963_25265077_25265696_25265844_25265979_25266088_25266175
ENSMUSG00000026956.16_0	chr2	-	1689	9	FSM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	53	1607	-14	-2	multi-exon	FALSE	canonical	3	362	junction_3	36.5288841192829	452	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGACTCTGATTGTCTGT	NA	False	NA	-22	True	NA	NA	NA	25255641	25251507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
ENSMUSG00000026958.14_2	chr2	-	1668	13	FSM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	12	2	-1	-2	multi-exon	FALSE	canonical	3	250	junction_10	27.0014145719977	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTCTAGTAGGATCCA	9013	False	NA	-19	True	AATAAA	-15	NA	25246359	25242303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
ENSMUSG00000026958.14_5	chr2	-	3538	2	FSM	ENSMUSG00000026958.14	ENSMUST00000149953.2	466	2	-3074	2	110	-2	multi-exon	FALSE	canonical	3	339	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTCTAGTAGGATCCA	9412	False	NA	-19	True	AATAAA	-15	NA	25245960	25242303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25242579_25242697
ENSMUSG00000026959.14_0	chr2	-	3487	17	ISM	ENSMUSG00000026959.14	ENSMUST00000114308.10	4165	20	7585	4	-6113	-4	3prime_fragment	FALSE	canonical	1	3	junction_1	6.67990222608086	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTTCCGGGTTTTGTCT	9879	False	NA	-8	True	NA	NA	NA	25201522	25181196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25182497_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
ENSMUSG00000026959.14_1	chr2	-	3126	17	ISM	ENSMUSG00000026959.14	ENSMUST00000114317.10	3809	20	7588	6	-6110	-6	3prime_fragment	FALSE	canonical	3	13	junction_1	5.11699069278028	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAATTTCCGGGTTTTGT	9882	False	NA	-10	True	NA	NA	NA	25201519	25181198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25182141_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
ENSMUSG00000026959.14_17	chr2	-	2639	16	ISM	ENSMUSG00000026959.14	ENSMUST00000114318.10	3920	21	7584	4160	-6114	-3283	internal_fragment	FALSE	canonical	3	19	junction_2	4.55289895439037	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCGTGTGGATTTGTGG	9878	False	NA	NA	False	NA	NA	NA	25201523	25185352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
ENSMUSG00000026959.14_19	chr2	-	3439	6	ISM	ENSMUSG00000026959.14	ENSMUST00000114318.10	3920	21	7586	9900	-6112	2400	internal_fragment	FALSE	canonical	3	22	junction_5	4.58693797647189	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	9880	False	NA	NA	False	NA	NA	NA	25201521	25191092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
ENSMUSG00000026959.14_3	chr2	-	3596	18	ISM	ENSMUSG00000026959.14	ENSMUST00000114310.10	4276	21	7585	6	-6113	-6	3prime_fragment	FALSE	canonical	2	8	junction_2	6.39852924277042	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAATTTCCGGGTTTTGT	9879	False	NA	-10	True	NA	NA	NA	25201522	25181198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25182497_25184449_25184561_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
ENSMUSG00000026959.14_7	chr2	-	3240	18	ISM	ENSMUSG00000026959.14	ENSMUST00000114318.10	3920	21	7585	6	-6113	-6	3prime_fragment	FALSE	canonical	0	0	junction_1	7.78428903043448	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAATTTCCGGGTTTTGT	9879	False	NA	-10	True	NA	NA	NA	25201522	25181198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25182141_25184449_25184561_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
ENSMUSG00000026960.7_1	chr2	+	1789	4	FSM	ENSMUSG00000026960.7	ENSMUST00000028336.7	2548	4	25	734	25	-734	multi-exon	FALSE	canonical	3	497	junction_2	8.2192186706253	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCTTGCTTGCTATT	NA	False	NA	51	True	TTTAAA	-5	NA	53082124	53108498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_53082535_53084295_53084350_53092930_53093064_53107306
ENSMUSG00000026960.7_13	chr2	+	1424	1	ISM	ENSMUSG00000026960.7	ENSMUST00000028336.7	2548	4	25703	6	25703	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTCTTTGTGTGTAATG	193	False	NA	18	True	ATTAAA	-11	NA	53107802	53109226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_53107800_53109200
ENSMUSG00000026960.7_2	chr2	+	1482	4	FSM	ENSMUSG00000026960.7	ENSMUST00000155517.2	582	4	31	-931	31	-755	multi-exon	FALSE	canonical	3	23	junction_1	228.30583776057	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATTAAGCTTTAAATGT	NA	False	NA	30	True	AATATA	-42	NA	53081768	53108477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_53081893_53084295_53084350_53092930_53093064_53107306
ENSMUSG00000026965.13_2	chr2	+	2671	13	FSM	ENSMUSG00000026965.13	ENSMUST00000028341.11	3004	13	24	309	24	-309	multi-exon	FALSE	canonical	3	410	junction_2	48.8355374929182	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATGTATTTTGTTGGA	NA	False	NA	29	True	ATTAAA	-16	NA	25162513	25175618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25162690_25162926_25163550_25163811_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
ENSMUSG00000026965.13_3	chr2	+	2933	12	NIC	ENSMUSG00000026965.13	novel	3004	13	NA	NA	23	-310	intron_retention	TRUE	canonical	3	416	junction_6	46.7767689745934	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCATGTATTTTGTTGG	NA	False	NA	28	True	ATTAAA	-15	NA	25162512	25175617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_25162690_25162926_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
ENSMUSG00000026965.13_7	chr2	+	2316	12	ISM	ENSMUSG00000026965.13	ENSMUST00000028341.11	3004	13	613	312	-387	-312	3prime_fragment	FALSE	canonical	3	410	junction_1	50.7055998015966	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTTTCATGTATTTTGTT	NA	False	NA	26	True	ATTAAA	-13	NA	25163102	25175615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25163550_25163811_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
ENSMUSG00000026966.7_0	chr2	-	848	3	FSM	ENSMUSG00000026966.7	ENSMUST00000028342.7	862	3	10	4	-2	-4	multi-exon	FALSE	canonical	3	707	junction_2	68	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTGTGTCTGCTAGCT	NA	False	NA	-10	True	AATAAA	-12	NA	25162418	25161054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25161594_25161940_25162141_25162309
ENSMUSG00000026966.7_2	chr2	-	975	2	FSM	ENSMUSG00000026966.7	ENSMUST00000141470.2	1006	2	74	-43	40	-4	multi-exon	FALSE	canonical	3	843	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTGTGTCTGCTAGCT	NA	False	NA	-10	True	AATAAA	-12	NA	25162376	25161054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25161594_25161940
ENSMUSG00000026966.7_3	chr2	-	834	3	FSM	ENSMUSG00000026966.7	ENSMUST00000133697.2	845	3	7	4	1	-4	multi-exon	FALSE	canonical	3	46	junction_2	398.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTGTGTCTGCTAGCT	NA	False	NA	-10	True	AATAAA	-12	NA	25162415	25161054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25161594_25161940_25162141_25162320
ENSMUSG00000026966.7_5	chr2	-	498	1	ISM	ENSMUSG00000026966.7	ENSMUST00000133697.2	845	3	870	4	864	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTGTGTCTGCTAGCT	NA	False	NA	-10	True	AATAAA	-12	NA	25161552	25161054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25161100_25161600
ENSMUSG00000026970.17_0	chr2	-	1531	1	ISM	ENSMUSG00000026970.17	ENSMUST00000028347.13	4436	14	211468	1	10597	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTCCTGTCGGTTTTTT	NA	False	NA	-1	True	AATAAA	-16	NA	60582068	60580537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_60580500_60582100
ENSMUSG00000026970.17_1	chr2	-	1817	15	FSM	ENSMUSG00000026970.17	ENSMUST00000112509.2	1806	15	25	-36	-7	36	multi-exon	FALSE	canonical	3	131	junction_6	64.9034211858871	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGCAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	60711789	60583029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60590102_60590151_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60711461
ENSMUSG00000026970.17_10	chr2	-	1964	14	FSM	ENSMUSG00000026970.17	ENSMUST00000028347.13	4436	14	-21	2493	-21	36	multi-exon	FALSE	canonical	3	25	junction_13	80.5716264093541	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGCAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	60793557	60583029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
ENSMUSG00000026970.17_2	chr2	-	1773	14	NIC	ENSMUSG00000026970.17	novel	2543	15	NA	NA	-11	36	combination_of_known_junctions	FALSE	canonical	3	198	junction_5	40.1883141188577	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGCAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	60711793	60583029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60711461
ENSMUSG00000026970.17_5	chr2	-	1696	15	NIC	ENSMUSG00000026970.17	novel	2543	15	NA	NA	295	36	combination_of_known_junctions	FALSE	canonical	3	25	junction_14	91.0514824095665	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGCAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	60793241	60583029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60590102_60590151_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
ENSMUSG00000026972.16_12	chr2	-	2241	6	NIC	ENSMUSG00000026972.16	novel	1590	7	NA	NA	-13	0	intron_retention	FALSE	canonical	3	75	junction_2	4.57820925690384	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGGCGAGTGGCTGG	9368	False	NA	-34	True	AATAAA	-14	NA	24825213	24815366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_24815689_24815767_24816461_24816556_24816740_24816889_24817045_24817137_24817852_24825039
ENSMUSG00000026972.16_2	chr2	-	1611	8	FSM	ENSMUSG00000026972.16	ENSMUST00000028349.14	1666	8	52	3	-12	0	multi-exon	FALSE	canonical	3	62	junction_2	7.55658923167897	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGGCGAGTGGCTGG	9369	False	NA	-34	True	AATAAA	-14	NA	24825212	24815366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_24815689_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
ENSMUSG00000026972.16_4	chr2	-	1499	7	NIC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	15	junction_6	24.8445164976097	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGGCGAGTGGCTGGCC	9372	False	NA	-32	True	AATAAA	-16	NA	24825209	24815364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_24815689_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24825039
ENSMUSG00000026972.16_6	chr2	-	1617	7	NIC	ENSMUSG00000026972.16	novel	1590	7	NA	NA	-2	-1	intron_retention	FALSE	canonical	0	0	junction_2	30.4940795711051	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGGCGAGTGGCTGGCC	9404	False	NA	-32	True	AATAAA	-16	NA	24825177	24815364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_24815689_24815767_24816461_24816594_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
ENSMUSG00000026972.16_7	chr2	-	1688	7	NIC	ENSMUSG00000026972.16	novel	1590	7	NA	NA	-12	0	intron_retention	FALSE	canonical	3	75	junction_2	4.41273409829124	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGGCGAGTGGCTGG	9369	False	NA	-34	True	AATAAA	-14	NA	24825212	24815366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_24815689_24815767_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
ENSMUSG00000026974.12_0	chr2	+	1247	6	FSM	ENSMUSG00000026974.12	ENSMUST00000028350.9	3903	6	-6	2662	-6	147	multi-exon	FALSE	canonical	3	842	junction_1	25.9028955910338	800	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGACTGTCGTGTAGTCAA	NA	False	NA	34	True	NA	NA	NA	24839797	24849425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_24840060_24841484_24841545_24842597_24842705_24843247_24843389_24848047_24848229_24848929
ENSMUSG00000026975.11_1	chr2	+	1617	9	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	-6	-15	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	28.4250659629841	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTAGAAATCTGTAATTA	NA	False	NA	19	True	ATTAAA	-22	NA	24852446	24862158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24852638_24853034_24853169_24853467_24853556_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026975.11_11	chr2	+	1790	9	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	-3	-24	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	36.416857360294	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTAATTTTAGAAAT	NA	False	NA	10	True	ATTAAA	-13	NA	24852449	24862149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24852823_24853034_24853169_24853467_24853556_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026975.11_16	chr2	+	4296	6	NIC	ENSMUSG00000026975.11	novel	2296	7	NA	NA	-4	-18	intron_retention	FALSE	canonical	3	99	junction_5	15.0917195839308	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATTTTAGAAATCTGTAA	NA	False	NA	16	True	ATTAAA	-19	NA	24852473	24862155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026975.11_2	chr2	+	1624	9	FSM	ENSMUSG00000026975.11	ENSMUST00000028351.9	1666	9	39	3	-2	-1	multi-exon	FALSE	canonical	3	62	junction_3	22.9945645751338	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTATGTGTATGCATCTG	NA	False	NA	33	True	ATTAAA	-36	NA	24852450	24862172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_24852638_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026975.11_27	chr2	+	1796	9	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	-4	-16	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	33.0924368247489	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTAGAAATCTGTAATT	NA	False	NA	18	True	ATTAAA	-21	NA	24852448	24862157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24852823_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026975.11_3	chr2	+	1397	7	NIC	ENSMUSG00000026975.11	novel	1554	8	NA	NA	1	-24	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	41.9076365356005	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTAATTTTAGAAAT	NA	False	NA	10	True	ATTAAA	-13	NA	24852435	24862149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24852638_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026975.11_30	chr2	+	1382	1	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	2	-2705	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24852454	24853836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24852500_24853800
ENSMUSG00000026975.11_4	chr2	+	1530	8	FSM	ENSMUSG00000026975.11	ENSMUST00000126909.8	1554	8	16	8	-3	-8	multi-exon	FALSE	canonical	3	9	junction_2	38.473950901346	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGTAATTATGTGTAT	NA	False	NA	26	True	ATTAAA	-29	NA	24852449	24862165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_24852638_24853034_24853169_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026975.11_5	chr2	+	1518	8	NIC	ENSMUSG00000026975.11	novel	1554	8	NA	NA	-4	-24	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	37.5004761874528	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTAATTTTAGAAAT	NA	False	NA	10	True	ATTAAA	-13	NA	24852448	24862149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24852638_24853034_24853169_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026975.11_7	chr2	+	1383	7	NIC	ENSMUSG00000026975.11	novel	1554	8	NA	NA	-4	-11	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	42.6122700117649	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAATCTGTAATTATGTG	NA	False	NA	23	True	ATTAAA	-26	NA	24852459	24862162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24852638_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026977.18_0	chr2	+	3550	10	FSM	ENSMUSG00000026977.18	ENSMUST00000102748.11	3594	10	37	7	11	-7	multi-exon	FALSE	canonical	3	327	junction_5	27.2519112479596	661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTAGTTTGAACTTTTT	NA	False	NA	20	True	AATAAA	-17	NA	60040267	60079548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
ENSMUSG00000026977.18_47	chr2	+	2319	6	ISM	ENSMUSG00000026977.18	ENSMUST00000067542.15	2244	10	9672	-1248	-2313	-6	3prime_fragment	FALSE	canonical	3	327	junction_1	33.2180673730426	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAGTTTGAACTTTTTC	NA	False	NA	21	True	AATAAA	-18	NA	60064784	60079549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
ENSMUSG00000026977.18_56	chr2	+	2412	3	ISM	ENSMUSG00000026977.18	ENSMUST00000067542.15	2244	10	17855	-1248	-445	-6	3prime_fragment	FALSE	canonical	3	332	junction_2	19.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAGTTTGAACTTTTTC	938	False	NA	21	True	AATAAA	-18	NA	60072967	60079549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_60074015_60075555_60075605_60078233
ENSMUSG00000026977.18_9	chr2	+	3647	11	FSM	ENSMUSG00000026977.18	ENSMUST00000102747.8	2271	11	-148	-1228	12	-10	multi-exon	FALSE	canonical	3	14	junction_1	141.271405457722	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATTTTAGTTTGAACTT	NA	False	NA	17	True	AATAAA	-14	NA	60040268	60079545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_60040429_60055113_60055215_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
ENSMUSG00000026979.17_1	chr2	+	3573	18	NIC	ENSMUSG00000026979.17	novel	4748	17	NA	NA	1	471	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	6.25413358117742	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGGCTCCACTTGCGGA	NA	False	NA	NA	False	NA	NA	NA	24275344	24297490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24275475_24276644_24276722_24284033_24285053_24286316_24286446_24286688_24286798_24287222_24287578_24290432_24290613_24291025_24291107_24291232_24291346_24291535_24291595_24291743_24291834_24292882_24292927_24293211_24293373_24294393_24294465_24294748_24294913_24295318_24295464_24295698_24295843_24296988
ENSMUSG00000026979.17_11	chr2	+	483	1	ISM	ENSMUSG00000026979.17	ENSMUST00000102942.8	11265	18	39380	7482	1361	465	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGAAATTGGCTCCACT	9920	False	NA	NA	False	NA	NA	NA	24297001	24297484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_24297000_24297500
ENSMUSG00000026979.17_16	chr2	+	3450	17	FSM	ENSMUSG00000026979.17	ENSMUST00000166388.2	4181	17	7	724	7	469	multi-exon	FALSE	canonical	1	3	junction_1	5.49857936198069	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATTGGCTCCACTTGCG	NA	False	NA	NA	False	NA	NA	NA	24276635	24297488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_24276722_24284033_24285053_24286316_24286446_24286688_24286798_24287222_24287578_24290432_24290613_24291025_24291107_24291232_24291346_24291535_24291595_24291743_24291834_24292882_24292927_24293211_24293373_24294393_24294465_24294748_24294913_24295318_24295464_24295698_24295843_24296988
ENSMUSG00000026979.17_17	chr2	+	2885	16	ISM	ENSMUSG00000026979.17	ENSMUST00000166388.2	4181	17	7884	724	-6535	469	3prime_fragment	FALSE	canonical	2	7	junction_4	4.71404520791032	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATTGGCTCCACTTGCG	7242	False	NA	NA	False	NA	NA	NA	24284512	24297488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_24285053_24286316_24286446_24286688_24286798_24287222_24287578_24290432_24290613_24291025_24291107_24291232_24291346_24291535_24291595_24291743_24291834_24292882_24292927_24293211_24293373_24294393_24294465_24294748_24294913_24295318_24295464_24295698_24295843_24296988
ENSMUSG00000026979.17_2	chr2	+	3496	17	FSM	ENSMUSG00000026979.17	ENSMUST00000056641.15	4748	17	1	1251	1	471	multi-exon	FALSE	canonical	2	7	junction_1	5.02338282435253	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGGCTCCACTTGCGGA	NA	False	NA	NA	False	NA	NA	NA	24275344	24297490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_24275475_24284033_24285053_24286316_24286446_24286688_24286798_24287222_24287578_24290432_24290613_24291025_24291107_24291232_24291346_24291535_24291595_24291743_24291834_24292882_24292927_24293211_24293373_24294393_24294465_24294748_24294913_24295318_24295464_24295698_24295843_24296988
ENSMUSG00000026979.17_3	chr2	+	5001	19	NIC	ENSMUSG00000026979.17	novel	4748	17	NA	NA	-4	11	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	6.87835215695313	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTTTTCATCCACTTA	NA	False	NA	NA	False	NA	NA	NA	24275339	24298752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24275475_24276370_24276532_24276644_24276722_24284033_24285053_24286316_24286446_24286688_24286798_24287222_24287578_24290432_24290613_24291025_24291107_24291232_24291346_24291535_24291595_24291743_24291834_24292882_24292927_24293211_24293373_24294393_24294465_24294748_24294913_24295318_24295464_24295698_24295843_24296988
ENSMUSG00000026979.17_4	chr2	+	3738	16	NIC	ENSMUSG00000026979.17	novel	4748	17	NA	NA	-1	11	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	6	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTTTTCATCCACTTA	NA	False	NA	NA	False	NA	NA	NA	24275345	24298752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24275475_24286316_24286446_24286688_24286798_24287222_24287578_24290432_24290613_24291025_24291107_24291232_24291346_24291535_24291595_24291743_24291834_24292882_24292927_24293211_24293373_24294393_24294465_24294748_24294913_24295318_24295464_24295698_24295843_24296988
ENSMUSG00000026979.17_7	chr2	+	3132	13	ISM	ENSMUSG00000026979.17	ENSMUST00000166388.2	4181	17	10652	-359	-3767	-170	3prime_fragment	FALSE	canonical	2	7	junction_1	4.65698400254929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAGTGGGTGAGTGTGA	199	False	NA	NA	False	AATAAA	-12	NA	24287280	24298571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_24287578_24290432_24290613_24291025_24291107_24291232_24291346_24291535_24291595_24291743_24291834_24292882_24292927_24293211_24293373_24294393_24294465_24294748_24294913_24295318_24295464_24295698_24295843_24296988
ENSMUSG00000026980.16_1	chr2	-	1442	1	ISM	ENSMUSG00000026980.16	ENSMUST00000112533.8	6901	35	89757	2	89685	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTAATCTCCTTGGCTC	1927	False	NA	-13	True	AATAAA	-18	NA	60123890	60122448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_60122400_60123900
ENSMUSG00000026980.16_2	chr2	-	6865	35	FSM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-42	-1651	30	-6	multi-exon	FALSE	canonical	0	0	junction_19	111.726541471596	862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATTTTAATCTCCTTG	NA	False	NA	-17	True	AATAAA	-14	NA	60213617	60122452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_60124283_60129390_60129559_60131298_60131422_60133921_60134072_60136673_60136843_60138482_60138710_60141952_60142148_60144500_60144618_60146432_60146601_60148651_60148818_60152041_60152269_60154162_60154293_60158130_60158292_60158733_60158840_60160319_60160460_60161069_60161153_60161420_60161489_60162662_60162839_60163268_60163305_60164793_60164909_60168638_60168708_60170496_60170579_60178696_60178840_60180201_60180402_60182399_60182570_60182697_60182787_60183265_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
ENSMUSG00000026987.17_16	chr2	-	3923	13	NIC	ENSMUSG00000026987.17	novel	7576	34	NA	NA	122	-9	combination_of_known_junctions	FALSE	canonical	3	146	junction_8	24.9937492185546	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTAACATTCTTTTTT	NA	False	NA	-13	True	AATAAA	-10	NA	59750773	59729715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737887_59738094_59742025_59742187_59742745_59742902_59743072_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638
ENSMUSG00000026987.17_19	chr2	-	6078	28	NIC	ENSMUSG00000026987.17	novel	7576	34	NA	NA	-2273	-9	combination_of_known_junctions	FALSE	canonical	3	67	junction_27	39.7420696336443	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTAACATTCTTTTTT	NA	False	NA	-13	True	AATAAA	-10	NA	59792660	59729715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737887_59738094_59742025_59742187_59742745_59742902_59743072_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638_59750883_59752486_59752562_59753884_59754100_59755004_59755260_59756363_59756505_59762448_59762515_59764014_59764060_59765558_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364
ENSMUSG00000026987.17_3	chr2	-	3202	10	NIC	ENSMUSG00000026987.17	novel	7576	34	NA	NA	-1275	-3	combination_of_known_junctions	FALSE	canonical	3	146	junction_8	25.6693120329882	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACATTCTTTTTTTTTTAG	NA	False	NA	-7	True	AATAAA	-16	NA	59744155	59729709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737887_59738094_59742025_59742187_59742745_59742902_59743072_59743350_59743883
ENSMUSG00000026987.17_36	chr2	-	2686	6	NIC	ENSMUSG00000026987.17	novel	7576	34	NA	NA	4431	-9	combination_of_known_junctions	FALSE	canonical	3	177	junction_5	23.007824755939	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTAACATTCTTTTTT	NA	False	NA	-13	True	AATAAA	-10	NA	59738449	59729715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737887
ENSMUSG00000026988.16_1	chr2	-	2043	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-4	-3	combination_of_known_splicesites	FALSE	canonical	3	16	junction_10	18.0765040867973	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCAATGCCTAAGTGT	NA	False	NA	-3	True	AATAAA	-17	NA	59712939	59682710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712821
ENSMUSG00000026988.16_10	chr2	-	2044	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-1	-3	combination_of_known_junctions	TRUE	canonical	3	4	junction_10	21.0570653225942	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCAATGCCTAAGTGT	NA	False	NA	-3	True	AATAAA	-17	NA	59712919	59682710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708876_59712744
ENSMUSG00000026988.16_18	chr2	-	1996	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-1	-5	combination_of_known_junctions	FALSE	canonical	3	33	junction_10	14.3488675511345	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATTGCAATGCCTAAGT	NA	False	NA	-5	True	AATAAA	-15	NA	59712931	59682712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
ENSMUSG00000026988.16_2	chr2	-	1810	10	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-126	-3	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	11.5181016954473	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCAATGCCTAAGTGT	NA	False	NA	-3	True	AATAAA	-17	NA	59708816	59682710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473
ENSMUSG00000026988.16_21	chr2	-	2028	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-6	-4	combination_of_known_junctions	FALSE	canonical	3	4	junction_10	23.1810267244572	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTGCAATGCCTAAGTG	NA	False	NA	-4	True	AATAAA	-16	NA	59712907	59682711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708876_59712744
ENSMUSG00000026988.16_27	chr2	-	2052	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-7	-3	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	18.5580171354593	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCAATGCCTAAGTGT	NA	False	NA	-3	True	AATAAA	-17	NA	59712908	59682710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
ENSMUSG00000026988.16_3	chr2	-	2041	11	FSM	ENSMUSG00000026988.16	ENSMUST00000028368.14	2072	11	28	3	1	-3	multi-exon	FALSE	canonical	3	14	junction_10	21.0228447171167	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCAATGCCTAAGTGT	NA	False	NA	-3	True	AATAAA	-17	NA	59712900	59682710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
ENSMUSG00000026988.16_4	chr2	-	1992	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	17.6150503831241	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCAATGCCTAAGTGT	NA	False	NA	-3	True	AATAAA	-17	NA	59712928	59682710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
ENSMUSG00000026988.16_6	chr2	-	2102	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-3	-3	combination_of_known_junctions	FALSE	canonical	3	9	junction_10	19.790149064623	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCAATGCCTAAGTGT	NA	False	NA	-3	True	AATAAA	-17	NA	59712921	59682710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712744
ENSMUSG00000026988.16_8	chr2	-	2022	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-3	-3	combination_of_known_splicesites	FALSE	canonical	3	16	junction_10	20.6164982477626	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCAATGCCTAAGTGT	NA	False	NA	-3	True	AATAAA	-17	NA	59712921	59682710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712821
ENSMUSG00000026991.21_12	chr2	+	4329	21	FSM	ENSMUSG00000026991.21	ENSMUST00000168631.8	4484	21	155	0	-3	0	multi-exon	FALSE	canonical	0	0	junction_9	23.7412615503052	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTGTTCTTGCAGTTC	NA	False	NA	20	True	AATAAA	-20	NA	58991348	59185548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_58991473_59045021_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59182605_59182680_59184546
ENSMUSG00000026991.21_2	chr2	+	4488	22	FSM	ENSMUSG00000026991.21	ENSMUST00000102754.11	4614	22	122	4	-36	-3	multi-exon	TRUE	canonical	0	0	junction_9	23.3372202787765	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAATGTGTTCTTGCAG	NA	False	NA	17	True	AATAAA	-17	NA	58991315	59185545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_58991473_59045021_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59180837_59180967_59182605_59182680_59184546
ENSMUSG00000026991.21_37	chr2	+	3813	17	ISM	ENSMUSG00000026991.21	ENSMUST00000102754.11	4614	22	144556	4	-17210	-3	3prime_fragment	FALSE	canonical	0	0	junction_4	23.6587061142405	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAATGTGTTCTTGCAG	NA	False	NA	17	True	AATAAA	-17	NA	59135749	59185545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59180837_59180967_59182605_59182680_59184546
ENSMUSG00000026991.21_40	chr2	+	3702	16	ISM	ENSMUSG00000026991.21	ENSMUST00000112577.8	4222	21	78283	4	-14584	-3	3prime_fragment	FALSE	canonical	0	0	junction_3	23.4789740453501	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAATGTGTTCTTGCAG	NA	False	NA	17	True	AATAAA	-17	NA	59138375	59185545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59180837_59180967_59182605_59182680_59184546
ENSMUSG00000026991.21_41	chr2	+	3465	15	ISM	ENSMUSG00000026991.21	ENSMUST00000168631.8	4484	21	147292	1	-14474	-1	3prime_fragment	FALSE	canonical	0	0	junction_3	24.3826845552833	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGTGTTCTTGCAGTT	NA	False	NA	19	True	AATAAA	-19	NA	59138485	59185547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59182605_59182680_59184546
ENSMUSG00000026991.21_49	chr2	+	2580	12	ISM	ENSMUSG00000026991.21	ENSMUST00000112577.8	4222	21	92808	3	-59	-2	3prime_fragment	FALSE	canonical	1	21	junction_7	20.751580642774	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAATGTGTTCTTGCAGT	NA	False	NA	18	True	AATAAA	-18	NA	59152900	59185546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59180837_59180967_59182605_59182680_59184546
ENSMUSG00000026991.21_63	chr2	+	660	1	ISM	ENSMUSG00000026991.21	ENSMUST00000168631.8	4484	21	193694	1	12347	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGTGTTCTTGCAGTT	NA	False	NA	19	True	AATAAA	-19	NA	59184887	59185547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_59184900_59185500
ENSMUSG00000026994.10_2	chr2	-	2971	11	FSM	ENSMUSG00000026994.10	ENSMUST00000028378.4	3885	11	238	676	238	644	multi-exon	FALSE	canonical	1	2	junction_3	1.86815416922694	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTAATAATGGTTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	65955100	65913785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_65914637_65915580_65915734_65921238_65921341_65921505_65921638_65923874_65924076_65925544_65925663_65926133_65926369_65928056_65928207_65932788_65932962_65937193_65937817_65954867
ENSMUSG00000026999.15_12	chr2	+	1402	8	ISM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	3850	-1	-1538	1	3prime_fragment	FALSE	canonical	3	149	junction_3	60.5060293841592	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTGTTTGGAAGGTT	NA	False	NA	13	True	AATAAA	-22	NA	80473009	80489247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
ENSMUSG00000026999.15_3	chr2	+	1525	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	35	-1	19	1	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTGTTTGGAAGGTT	NA	False	NA	13	True	AATAAA	-22	NA	80469194	80489247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
ENSMUSG00000027001.11_0	chr2	+	964	4	FSM	ENSMUSG00000027001.11	ENSMUST00000028384.5	1632	4	199	469	13	368	multi-exon	FALSE	canonical	3	97	junction_1	4.10960933531265	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTGTTATTTCAGTAT	NA	False	NA	7	True	AATACA	-17	NA	80447587	80461536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_80447951_80451537_80451585_80454551_80454705_80461135
ENSMUSG00000027001.11_2	chr2	+	645	4	FSM	ENSMUSG00000027001.11	ENSMUST00000147290.8	1324	4	143	536	12	370	multi-exon	FALSE	canonical	3	18	junction_1	41.0446910899164	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTTATTTCAGTATCT	NA	False	NA	9	True	AATACA	-19	NA	80447586	80461538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_80447629_80451537_80451585_80454551_80454705_80461135
ENSMUSG00000027001.11_3	chr2	+	3922	3	NIC	ENSMUSG00000027001.11	novel	1632	4	NA	NA	5	351	intron_retention	FALSE	canonical	3	97	junction_1	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAAGTTTTACCTTTT	NA	False	NA	-10	True	AATGAA	-29	NA	80447579	80461519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_80447951_80451537_80454705_80461135
ENSMUSG00000027001.11_4	chr2	+	2032	4	FSM	ENSMUSG00000027001.11	ENSMUST00000151204.2	1993	4	-39	0	1	0	multi-exon	FALSE	canonical	3	15	junction_2	40.1441845795323	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAAGTACATACTGCAAA	NA	False	NA	NA	False	AATAAA	-15	NA	80447570	80462705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_80447951_80451537_80451585_80454669_80454705_80461135
ENSMUSG00000027001.11_9	chr2	+	7198	2	ISM	ENSMUSG00000027001.11	ENSMUST00000028384.5	1632	4	182	3650	1	-2813	intron_retention	FALSE	canonical	3	97	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTTGGTACAAAGTAAAAA	NA	False	NA	NA	False	CATAAA	-8	NA	80447570	80458355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_80447951_80451537
ENSMUSG00000027002.14_0	chr2	-	4367	31	FSM	ENSMUSG00000027002.14	ENSMUST00000028386.12	4469	31	89	13	89	-7	multi-exon	TRUE	canonical	3	653	junction_15	66.8594213422628	1648	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACACCTTGAATGATTTC	NA	False	NA	-13	True	AATAAA	-12	NA	80411519	80330868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_80331756_80332568_80332659_80336516_80336627_80337164_80337282_80339055_80339150_80343020_80343102_80343457_80343541_80348238_80348333_80349902_80350001_80350182_80350314_80350715_80350935_80353719_80353852_80354881_80355022_80355902_80356023_80358878_80359012_80360501_80360648_80363988_80364048_80365817_80365900_80368447_80368581_80370462_80370570_80370853_80370951_80371806_80371864_80375333_80375491_80378244_80378294_80379173_80379312_80383480_80383572_80383650_80383794_80384545_80384603_80385041_80385135_80400462_80400574_80411201
ENSMUSG00000027006.14_0	chr2	+	3793	23	FSM	ENSMUSG00000027006.14	ENSMUST00000028392.8	4042	23	247	2	247	-2	multi-exon	FALSE	canonical	3	242	junction_19	21.5763108543292	544	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAATTCTTTTGAAGATG	NA	False	NA	10	True	AATAAA	-16	NA	80146056	80184385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
ENSMUSG00000027007.17_0	chr2	+	5120	18	FSM	ENSMUSG00000027007.17	ENSMUST00000111785.9	5168	18	43	5	-31	-5	multi-exon	FALSE	canonical	3	47	junction_14	7.70386143235054	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGTTAAATTTATTTT	NA	False	NA	14	True	AATAAA	-15	NA	79465738	79503305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_79466089_79466376_79466423_79469600_79469651_79470489_79470547_79472305_79472346_79472434_79472534_79473747_79473957_79474748_79475453_79481731_79481805_79485430_79485520_79487490_79488694_79490576_79490655_79490736_79490865_79491197_79491349_79491982_79492049_79492652_79493109_79501073_79501192_79502102
ENSMUSG00000027007.17_12	chr2	+	4014	11	ISM	ENSMUSG00000027007.17	ENSMUST00000133266.2	4804	16	5432	51	5432	-51	3prime_fragment	FALSE	canonical	3	47	junction_7	8.91291198206288	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAACAAAAAACCCCAT	NA	False	NA	-32	True	TATAAA	-32	NA	79474957	79503259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_79475453_79481731_79481805_79485430_79485520_79487490_79488694_79490576_79490655_79490736_79490865_79491197_79491349_79491982_79492049_79492652_79493109_79501073_79501192_79502102
ENSMUSG00000027007.17_14	chr2	+	2847	8	ISM	ENSMUSG00000027007.17	ENSMUST00000133266.2	4804	16	18521	5	18521	-5	3prime_fragment	FALSE	canonical	3	47	junction_4	9.82292196438348	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGTTAAATTTATTTT	NA	False	NA	14	True	AATAAA	-15	NA	79488046	79503305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_79488694_79490576_79490655_79490736_79490865_79491197_79491349_79491982_79492049_79492652_79493109_79501073_79501192_79502102
ENSMUSG00000027007.17_16	chr2	+	828	1	ISM	ENSMUSG00000027007.17	ENSMUST00000111785.9	5168	18	36783	4	32953	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTTAAATTTATTTTT	NA	False	NA	15	True	AATAAA	-16	NA	79502478	79503306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_79502500_79503300
ENSMUSG00000027010.17_0	chr2	-	2286	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5252	-56	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_15	22.4311291636323	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCATTCTCCTCCTGAT	NA	False	NA	-8	True	AATAAA	-13	NA	71164436	71105089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164384
ENSMUSG00000027010.17_11	chr2	-	2710	15	ISM	ENSMUSG00000027010.17	ENSMUST00000151937.8	6351	18	34029	3207	-4880	420	3prime_fragment	TRUE	canonical	3	76	junction_14	16.956727639639	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGAGTTGGTTTCCTT	NA	False	NA	-3	True	AATAAA	-17	NA	71164064	71104613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948
ENSMUSG00000027010.17_2	chr2	-	2390	17	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5252	-56	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_15	34.4382940017359	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCATTCTCCTCCTGAT	NA	False	NA	-8	True	AATAAA	-13	NA	71164436	71105089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71163948_71164065_71164384
ENSMUSG00000027010.17_5	chr2	-	2468	18	FSM	ENSMUSG00000027010.17	ENSMUST00000151937.8	6351	18	200	3683	-16	-56	multi-exon	FALSE	canonical	3	27	junction_16	36.6501273382513	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCATTCTCCTCCTGAT	NA	False	NA	-8	True	AATAAA	-13	NA	71197893	71105089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71174233_71174377_71196870_71196925_71197856
ENSMUSG00000027011.15_0	chr2	+	1520	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	29	700	29	296	multi-exon	FALSE	canonical	3	305	junction_4	9.66643677887566	287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAATGTTGAAAGTCTTG	NA	False	NA	19	True	AATAAA	-27	NA	78699419	78750937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
ENSMUSG00000027012.16_0	chr2	+	2476	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112138.8	2466	16	-9	-1	8	1	multi-exon	FALSE	canonical	3	270	junction_1	83.3153580613376	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCTCAAATTTTCACTT	NA	False	NA	13	True	AATAAA	-15	NA	71042092	71093636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUSG00000027012.16_10	chr2	+	2462	16	NIC	ENSMUSG00000027012.16	novel	2548	18	NA	NA	-3	1	combination_of_known_junctions	FALSE	canonical	3	42	junction_15	136.596664999146	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCTCAAATTTTCACTT	NA	False	NA	13	True	AATAAA	-15	NA	71042332	71093636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092994
ENSMUSG00000027012.16_30	chr2	+	206	1	ISM	ENSMUSG00000027012.16	ENSMUST00000149735.2	2248	4	18115	217	-4680	-217	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATGAGGGGTGG	4689	False	NA	NA	False	AATAAA	-2	NA	71060462	71060668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_71060500_71060700
ENSMUSG00000027012.16_9	chr2	+	2465	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	155	11	-3	1	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCTCAAATTTTCACTT	NA	False	NA	13	True	AATAAA	-15	NA	71042332	71093636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUSG00000027014.15_1	chr2	-	3105	20	NIC	ENSMUSG00000027014.15	novel	3388	20	NA	NA	-1	-2	combination_of_known_junctions	TRUE	canonical	3	102	junction_18	49.445736787175	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATCATTGTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-17	NA	77776528	77726113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77776493
ENSMUSG00000027014.15_14	chr2	-	3134	21	NIC	ENSMUSG00000027014.15	novel	3471	21	NA	NA	8	-4	combination_of_known_junctions	FALSE	canonical	3	27	junction_20	75.0276449050615	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATCATTGTCTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	77776516	77726115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77770645_77770707_77776493
ENSMUSG00000027014.15_18	chr2	-	3152	21	NIC	ENSMUSG00000027014.15	novel	3471	21	NA	NA	8	-4	combination_of_known_junctions	FALSE	canonical	3	27	junction_20	70.3935188778058	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATCATTGTCTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	77776516	77726115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77770645_77770707_77776493
ENSMUSG00000027014.15_2	chr2	-	3079	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111819.8	3090	20	5	6	2	-4	multi-exon	FALSE	canonical	3	78	junction_1	57.3448044097962	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATCATTGTCTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	77776522	77726115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77776493
ENSMUSG00000027014.15_24	chr2	-	3129	21	NIC	ENSMUSG00000027014.15	novel	3471	21	NA	NA	10	-4	combination_of_known_junctions	FALSE	canonical	3	27	junction_20	72.1889707642379	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATCATTGTCTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	77776514	77726115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77770645_77770707_77776493
ENSMUSG00000027014.15_3	chr2	-	3149	21	FSM	ENSMUSG00000027014.15	ENSMUST00000065889.10	3471	21	203	119	8	-4	multi-exon	FALSE	canonical	3	27	junction_20	67.1203955590251	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATCATTGTCTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	77776516	77726115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77770645_77770707_77776493
ENSMUSG00000027014.15_4	chr2	-	3100	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111821.9	3388	20	169	119	-1	-4	multi-exon	FALSE	canonical	3	143	junction_19	43.213763581536	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATCATTGTCTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	77776528	77726115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
ENSMUSG00000027014.15_5	chr2	-	3078	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111818.8	3255	20	173	4	0	-4	multi-exon	FALSE	canonical	3	78	junction_1	52.4085273558816	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATCATTGTCTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	77776524	77726115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
ENSMUSG00000027016.18_4	chr2	-	2627	8	FSM	ENSMUSG00000027016.18	ENSMUST00000111830.9	2642	8	12	3	8	-3	multi-exon	FALSE	canonical	1	2	junction_7	1.29362644830535	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACCAAAAAAAAAAAATCTGC	NA	False	NA	NA	False	AATAAA	-4	NA	77349950	77240980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_77242485_77244297_77244400_77244916_77245096_77246073_77246320_77280494_77280658_77307078_77307190_77333883_77334027_77349771
ENSMUSG00000027018.12_2	chr2	+	1473	11	FSM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	-9	112	-9	-112	multi-exon	FALSE	canonical	3	1873	junction_8	150.054156890104	1550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACCACCGCCCACTGCT	5109	False	NA	12	True	AATAAA	-13	NA	71219594	71271854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
ENSMUSG00000027018.12_24	chr2	+	1420	10	ISM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	642	112	642	-112	3prime_fragment	FALSE	canonical	3	1873	junction_7	142.306398700519	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACCACCGCCCACTGCT	5760	False	NA	12	True	AATAAA	-13	NA	71220245	71271854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
ENSMUSG00000027030.16_0	chr2	-	1983	18	FSM	ENSMUSG00000027030.16	ENSMUST00000102715.4	3536	18	261	1292	-67	3	multi-exon	FALSE	canonical	3	28	junction_11	9.06874933675377	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCACTCCGAGTTCTGCT	NA	False	NA	NA	False	NA	NA	NA	68302351	68042080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_68042338_68051247_68051313_68093578_68093648_68097382_68097436_68137384_68137453_68139335_68139399_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417_68196552_68198740_68198843_68199339_68199450_68221257_68221314_68222454_68222597_68228767_68228877_68240372_68240486_68301977
ENSMUSG00000027030.16_3	chr2	-	3195	17	NIC	ENSMUSG00000027030.16	novel	3536	18	NA	NA	-61	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	14.5768437941826	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACAGTGCACTCGAGTCT	NA	False	NA	NA	False	AATAAA	-8	NA	68302345	68040799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_68042338_68051247_68051313_68093578_68093648_68097382_68097436_68137384_68137453_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417_68196552_68198740_68198843_68199339_68199450_68221257_68221314_68222454_68222597_68228767_68228877_68240372_68240486_68301977
ENSMUSG00000027030.16_5	chr2	-	3167	17	NIC	ENSMUSG00000027030.16	novel	3536	18	NA	NA	-63	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	14.1287329138179	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCGAGTCTCCTCCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	68302347	68040790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_68042338_68051247_68051313_68093578_68093648_68097382_68097436_68137384_68137453_68139335_68139399_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417_68196552_68199339_68199450_68221257_68221314_68222454_68222597_68228767_68228877_68240372_68240486_68301977
ENSMUSG00000027030.16_7	chr2	-	898	11	FSM	ENSMUSG00000027030.16	ENSMUST00000126663.8	2578	11	352	1328	352	-29	multi-exon	FALSE	canonical	3	41	junction_5	6.62117814289874	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATAATAATAATA	NA	False	NA	NA	False	NA	NA	NA	68196511	68042119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_68042338_68051247_68051313_68093578_68093648_68097382_68097436_68137384_68137453_68139335_68139399_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417
ENSMUSG00000027030.16_8	chr2	-	1806	16	FSM	ENSMUSG00000027030.16	ENSMUST00000123781.8	2038	16	-75	307	-75	-307	multi-exon	FALSE	canonical	3	28	junction_9	9.19323422716704	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTGCATTAAGAATCATA	NA	False	NA	NA	False	CATAAA	-17	NA	68302359	68093441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_68093648_68097382_68097436_68137384_68137453_68139335_68139399_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417_68196552_68198740_68198843_68199339_68199450_68221257_68221314_68222454_68222597_68228767_68228877_68240372_68240486_68301977
ENSMUSG00000027035.11_0	chr2	+	3948	9	ISM	ENSMUSG00000027035.11	ENSMUST00000176018.2	1279	11	-117	706	-1	-706	intron_retention	TRUE	canonical	3	48	junction_8	6.78232998312527	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGCAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	68691812	68938282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68935346
ENSMUSG00000027035.11_1	chr2	+	6795	11	NNC	ENSMUSG00000027035.11	novel	1279	11	NA	NA	0	-6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	18.4759302878096	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTACAGCATGAGTGTCC	NA	False	NA	-1	True	AATAAA	-12	NA	68691813	68944620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68935346_68935504_68938785_68943365_68943572
ENSMUSG00000027035.11_2	chr2	+	2368	10	FSM	ENSMUSG00000027035.11	ENSMUST00000028426.9	7038	10	29	4641	0	997	multi-exon	FALSE	canonical	3	48	junction_8	6.54896090146283	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGACAATTAACCCCTTGC	NA	False	NA	NA	False	AATAAA	-12	NA	68691813	68939985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68935346_68935504_68938785
ENSMUSG00000027035.11_3	chr2	+	6898	11	NNC	ENSMUSG00000027035.11	novel	1279	11	NA	NA	0	-7	at_least_one_novel_splicesite	TRUE	canonical	3	48	junction_8	6.39140047250992	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGTACAGCATGAGTGTC	NA	False	NA	-2	True	AATAAA	-11	NA	68691813	68944619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68935346_68935504_68938785_68943469_68943572
ENSMUSG00000027067.17_0	chr2	+	2781	17	FSM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	-45	3	-45	0	multi-exon	FALSE	canonical	3	1260	junction_7	140.688874382447	2356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGATGTCCTTATGTCTC	NA	False	NA	20	True	AATAAA	-16	NA	84867532	84877450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ENSMUSG00000027067.17_62	chr2	+	2930	16	ISM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	271	3	-28	0	3prime_fragment	FALSE	canonical	3	1260	junction_6	129.702223059848	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGATGTCCTTATGTCTC	NA	False	NA	20	True	AATAAA	-16	NA	84867848	84877450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ENSMUSG00000027067.17_63	chr2	+	2689	17	FSM	ENSMUSG00000027067.17	ENSMUST00000168266.8	2721	17	32	0	28	0	multi-exon	FALSE	canonical	3	121	junction_1	374.603436149483	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGATGTCCTTATGTCTC	NA	False	NA	20	True	AATAAA	-16	NA	84867826	84877450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ENSMUSG00000027071.15_1	chr2	-	1839	12	FSM	ENSMUSG00000027071.15	ENSMUST00000028465.14	1812	12	-13	-14	-13	14	multi-exon	FALSE	canonical	2	7	junction_11	6.62452243717697	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTTCTGTGTCAGTTGCC	NA	False	NA	NA	False	AATGAA	-15	NA	84865844	84828912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84829471_84829949_84830028_84830667_84830734_84831000_84831095_84852072_84852210_84852691_84852834_84853497_84853576_84853826_84853921_84854453_84854518_84854725_84854798_84855199_84855336_84865524
ENSMUSG00000027071.15_2	chr2	-	1765	13	NIC	ENSMUSG00000027071.15	novel	1812	12	NA	NA	-23	16	combination_of_known_junctions	FALSE	canonical	2	3	junction_11	7.59751421336099	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTGTGTCAGTTGCCTT	NA	False	NA	NA	False	AATGAA	-17	NA	84863561	84828910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_84829471_84829949_84830028_84830667_84830734_84831000_84831095_84852072_84852210_84852691_84852834_84853497_84853576_84853826_84853921_84854453_84854518_84854725_84854798_84855199_84855336_84862864_84862892_84863344
ENSMUSG00000027074.15_0	chr2	+	2416	13	NIC	ENSMUSG00000027074.15	novel	2621	6	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	9.67923034130297	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCAACTACTGCTTCTAC	NA	False	NA	2	True	AATAAA	-13	NA	84766962	84788846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_84766989_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
ENSMUSG00000027074.15_1	chr2	+	2559	13	FSM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	20	4	-5	-4	multi-exon	FALSE	canonical	3	20	junction_9	6.42693982821961	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTACTGCTTCTACCTC	NA	False	NA	5	True	AATAAA	-16	NA	84767027	84788849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_84767194_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
ENSMUSG00000027074.15_4	chr2	+	2529	13	NIC	ENSMUSG00000027074.15	novel	2583	13	NA	NA	11	-4	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	10.5708587898787	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTACTGCTTCTACCTC	NA	False	NA	5	True	AATAAA	-16	NA	84767018	84788849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_84767194_84767905_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
ENSMUSG00000027074.15_5	chr2	+	914	4	ISM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	-26	17304	-8	2875	5prime_fragment	FALSE	canonical	3	24	junction_1	7.58653778449403	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGTGATAATTTTGA	NA	False	NA	NA	False	ATTAAA	-26	NA	84766981	84771549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_84767194_84767866_84768214_84768566_84768697_84771324
ENSMUSG00000027074.15_9	chr2	+	2266	12	ISM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	986	4	760	-4	3prime_fragment	FALSE	canonical	3	20	junction_8	6.24301262305069	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTACTGCTTCTACCTC	NA	False	NA	5	True	AATAAA	-16	NA	84767993	84788849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
ENSMUSG00000027075.17_1	chr2	+	2371	15	NIC	ENSMUSG00000027075.17	novel	3089	15	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	18.8209880674936	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGGCTGGTGTGTATC	NA	False	NA	9	True	AATAAA	-11	NA	84669735	84693922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_84669850_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
ENSMUSG00000027075.17_16	chr2	+	2401	15	FSM	ENSMUSG00000027075.17	ENSMUST00000111624.8	2556	15	152	3	152	0	multi-exon	FALSE	canonical	3	14	junction_1	20.7551321413303	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGGCTGGTGTGTATC	459	False	NA	9	True	AATAAA	-11	NA	84670694	84693922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_84670839_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
ENSMUSG00000027075.17_17	chr2	+	2478	14	FSM	ENSMUSG00000027075.17	ENSMUST00000111625.2	2487	14	-7	16	-7	0	multi-exon	FALSE	canonical	3	65	junction_5	11.2969598465759	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGGCTGGTGTGTATC	726	False	NA	9	True	AATAAA	-11	NA	84670961	84693922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
ENSMUSG00000027075.17_3	chr2	+	2517	15	FSM	ENSMUSG00000027075.17	ENSMUST00000028469.14	2539	15	9	13	0	-5	multi-exon	FALSE	canonical	3	43	junction_1	14.9196829314671	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAATCTGGCTGGTGT	NA	False	NA	4	True	AATAAA	-6	NA	84669760	84693917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
ENSMUSG00000027075.17_40	chr2	+	2092	14	ISM	ENSMUSG00000027075.17	ENSMUST00000028469.14	2539	15	8	1822	-1	-624	5prime_fragment	FALSE	canonical	3	43	junction_1	15.474353663458	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTGTATCTATGCTTGT	NA	False	NA	NA	False	ATTAAA	-27	NA	84669759	84692108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719
ENSMUSG00000027076.11_0	chr2	+	656	3	FSM	ENSMUSG00000027076.11	ENSMUST00000028470.10	690	3	32	2	32	-2	multi-exon	FALSE	canonical	3	373	junction_1	17.5	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGCAGTGTCTTTACTTGA	6449	False	NA	8	True	ATTAAA	-13	NA	84657372	84660555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_84657492_84657942_84658058_84660133
ENSMUSG00000027076.11_1	chr2	+	229	1	ISM	ENSMUSG00000027076.11	ENSMUST00000028470.10	690	3	2986	2	2599	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGCAGTGTCTTTACTTGA	1253	False	NA	8	True	ATTAAA	-13	NA	84660326	84660555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_84660300_84660600
ENSMUSG00000027077.8_0	chr2	-	587	3	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	6978	-3	6978	3	3prime_fragment	FALSE	canonical	3	139	junction_1	1.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGGCAGTTTGCCAGG	4747	False	NA	-16	True	AATAAA	-22	NA	84646018	84641516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84641884_84645634_84645787_84645950
ENSMUSG00000027077.8_1	chr2	-	920	4	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	6479	1	6479	-1	3prime_fragment	FALSE	canonical	3	109	junction_3	14.8996644257513	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATGTGTGGCAGTTTGC	4248	False	NA	-20	True	AATAAA	-18	NA	84646517	84641520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227
ENSMUSG00000027077.8_3	chr2	-	524	2	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	7200	2	7200	-2	3prime_fragment	FALSE	canonical	3	139	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATGTGTGGCAGTTTG	4969	False	NA	-21	True	AATAAA	-17	NA	84645796	84641521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84641884_84645634
ENSMUSG00000027077.8_4	chr2	-	857	5	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	5603	2	5603	-2	3prime_fragment	FALSE	canonical	3	6	junction_4	55.2222781130949	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATGTGTGGCAGTTTG	3372	False	NA	-21	True	AATAAA	-17	NA	84647393	84641521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321
ENSMUSG00000027077.8_5	chr2	-	1675	8	FSM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	83	3	83	-3	multi-exon	FALSE	canonical	2	2	junction_5	63.4909603078763	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCCATGTGTGGCAGTTT	NA	False	NA	-22	True	AATAAA	-16	NA	84652913	84641522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321_84647368_84647467_84647601_84648619_84649255_84652836
ENSMUSG00000027078.15_0	chr2	+	1358	4	FSM	ENSMUSG00000027078.15	ENSMUST00000102642.9	1560	4	24	178	18	-178	multi-exon	FALSE	canonical	3	170	junction_3	17.1075032271418	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCGTTTCTCGTGG	NA	False	NA	NA	False	NA	NA	NA	84629195	84640342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_84629277_84633122_84633219_84636680_84636868_84639348
ENSMUSG00000027078.15_3	chr2	+	1320	3	ISM	ENSMUSG00000027078.15	ENSMUST00000154709.2	1171	4	36	334	36	-175	5prime_fragment	FALSE	canonical	3	170	junction_2	20.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGACCGTTTCTCGTGGGTG	NA	False	NA	NA	False	NA	NA	NA	84633082	84640345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_84633219_84636680_84636868_84639348
ENSMUSG00000027079.16_0	chr2	-	1802	3	FSM	ENSMUSG00000027079.16	ENSMUST00000028475.9	1912	3	104	6	-4	-4	multi-exon	FALSE	canonical	3	238	junction_1	30.5	333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGTTGGTATGATTCT	NA	False	NA	-27	True	AATAAA	-11	NA	84557590	84553471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84554562_84555872_84556501_84557506
ENSMUSG00000027080.7_0	chr2	+	2028	5	FSM	ENSMUSG00000027080.7	ENSMUST00000102645.4	2059	5	23	8	23	-8	multi-exon	FALSE	canonical	3	447	junction_3	24.2525771826418	474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGTATAGAGGCTGGAG	3380	False	NA	4	True	AATAAA	-13	NA	84508768	84518551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84517209
ENSMUSG00000027082.16_1	chr2	-	1295	9	NIC	ENSMUSG00000027082.16	novel	1492	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_8	40.1230529122598	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84307119	84263203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307084
ENSMUSG00000027082.16_13	chr2	-	3033	8	FSM	ENSMUSG00000027082.16	ENSMUST00000111714.8	3614	8	0	581	0	2	multi-exon	FALSE	canonical	3	6	junction_1	78.6801844721492	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTTATGATTATTTG	NA	False	NA	NA	False	AATAAA	-23	NA	84307107	84271064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84273270_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
ENSMUSG00000027082.16_16	chr2	-	3382	8	NIC	ENSMUSG00000027082.16	novel	3576	8	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	78.900867794819	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTTATGATTATTTG	NA	False	NA	NA	False	AATAAA	-23	NA	84307119	84271064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_84273657_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307084
ENSMUSG00000027082.16_3	chr2	-	1331	9	NIC	ENSMUSG00000027082.16	novel	1492	9	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_8	41.6863286941894	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84307105	84263203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
ENSMUSG00000027082.16_4	chr2	-	1319	9	FSM	ENSMUSG00000027082.16	ENSMUST00000028487.10	1492	9	173	0	173	0	multi-exon	FALSE	canonical	3	41	junction_8	57.5972004527998	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84304345	84263203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286
ENSMUSG00000027082.16_7	chr2	-	4100	2	FSM	ENSMUSG00000027082.16	ENSMUST00000125677.2	679	2	-3418	-3	-3418	-2	multi-exon	FALSE	canonical	3	215	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATGTTGACTGTCCCCC	NA	False	NA	-4	True	AATAAA	-17	NA	84268357	84263200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84263529_84264585
ENSMUSG00000027086.17_1	chr2	-	3598	14	FSM	ENSMUSG00000027086.17	ENSMUST00000102706.4	2511	14	-969	-118	68	-4	multi-exon	FALSE	canonical	0	0	junction_12	76.1245475885547	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGACTATGGCCCACCA	7141	False	NA	NA	False	NA	NA	NA	69543774	69517162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532793_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470
ENSMUSG00000027086.17_2	chr2	-	3750	14	FSM	ENSMUSG00000027086.17	ENSMUST00000073152.13	2865	14	-896	11	-4	-11	multi-exon	FALSE	canonical	0	0	junction_12	59.5439273976854	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATAAAATGACTATGG	7069	False	NA	NA	False	NA	NA	NA	69543846	69517169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532706_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470
ENSMUSG00000027087.12_0	chr2	+	6990	30	FSM	ENSMUSG00000027087.12	ENSMUST00000028499.11	7054	30	61	3	1	-3	multi-exon	FALSE	canonical	3	32	junction_1	22.0930902622631	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCCTGTGTGGATTCTA	NA	False	NA	18	True	AATAAA	-18	NA	83554801	83637257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_83555264_83566853_83566985_83578196_83578289_83586149_83586265_83592211_83592274_83593995_83594042_83596111_83596238_83596970_83597016_83598638_83598683_83599035_83599093_83600396_83600450_83601478_83601682_83606711_83606904_83609357_83609404_83612282_83612391_83614148_83614208_83615676_83615832_83619260_83619399_83621538_83621607_83622236_83622385_83622894_83622988_83624577_83624658_83625262_83625344_83625782_83625889_83626429_83626589_83627694_83627797_83632113_83632228_83632321_83632430_83633223_83633347_83633583
ENSMUSG00000027087.12_1	chr2	+	6991	30	NIC	ENSMUSG00000027087.12	novel	7054	30	NA	NA	2	-3	intron_retention	FALSE	canonical	3	66	junction_1	18.5760640227655	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCCTGTGTGGATTCTA	NA	False	NA	18	True	AATAAA	-18	NA	83554797	83637257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_83555264_83566856_83566985_83578196_83578289_83586149_83586265_83592211_83592274_83593995_83594042_83596111_83596238_83596970_83597016_83598638_83598683_83599035_83599093_83600396_83600450_83601478_83601682_83606711_83606904_83609357_83609404_83612282_83612391_83614148_83614208_83615676_83615832_83619260_83619399_83621538_83621607_83622236_83622385_83622894_83622988_83624577_83624658_83625262_83625344_83625782_83625889_83626429_83626589_83627694_83627797_83632113_83632228_83632321_83632430_83633223_83633347_83633583
ENSMUSG00000027087.12_16	chr2	+	5609	19	ISM	ENSMUSG00000027087.12	ENSMUST00000111740.9	6788	28	46728	3	-30566	-3	3prime_fragment	FALSE	canonical	3	86	junction_1	17.2333297514145	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCCTGTGTGGATTCTA	NA	False	NA	18	True	AATAAA	-18	NA	83601626	83637257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_83601682_83606711_83606904_83609357_83609404_83612282_83612391_83614148_83614208_83615676_83615832_83619260_83619399_83621538_83621607_83622236_83622385_83622894_83622988_83624577_83624658_83625262_83625344_83625782_83625889_83626429_83626589_83627694_83627797_83632113_83632228_83632321_83632430_83633223_83633347_83633583
ENSMUSG00000027087.12_24	chr2	+	4937	13	ISM	ENSMUSG00000027087.12	ENSMUST00000111740.9	6788	28	64419	3	-12875	-3	3prime_fragment	FALSE	canonical	3	99	junction_1	16.1458198924675	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCCTGTGTGGATTCTA	NA	False	NA	18	True	AATAAA	-18	NA	83619317	83637257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_83619399_83621538_83621607_83622236_83622385_83622894_83622988_83624577_83624658_83625262_83625344_83625782_83625889_83626429_83626589_83627694_83627797_83632113_83632228_83632321_83632430_83633223_83633347_83633583
ENSMUSG00000027087.12_33	chr2	+	3741	2	ISM	ENSMUSG00000027087.12	ENSMUST00000131192.2	463	3	15	3	15	-3	intron_retention	FALSE	canonical	3	148	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCCTGTGTGGATTCTA	NA	False	NA	18	True	AATAAA	-18	NA	83633279	83637257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_83633347_83633583
ENSMUSG00000027087.12_34	chr2	+	2661	1	ISM	ENSMUSG00000027087.12	ENSMUST00000028499.11	7054	30	79856	3	1332	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCCTGTGTGGATTCTA	NA	False	NA	18	True	AATAAA	-18	NA	83634596	83637257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_83634600_83637300
ENSMUSG00000027088.11_0	chr2	+	2225	4	FSM	ENSMUSG00000027088.11	ENSMUST00000028494.9	2260	4	28	7	4	-6	multi-exon	FALSE	canonical	3	95	junction_2	4.49691252107735	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTATATGTCTTCTGAA	NA	False	NA	19	True	AATAAA	-9	NA	69620007	69627560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_69620301_69620629_69620666_69622680_69622836_69625819
ENSMUSG00000027088.11_1	chr2	+	2246	4	FSM	ENSMUSG00000027088.11	ENSMUST00000151298.8	667	4	-16	-1563	-16	-6	multi-exon	FALSE	canonical	3	8	junction_2	45.0653845971483	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTATATGTCTTCTGAA	NA	False	NA	19	True	AATAAA	-9	NA	69619950	69627560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_69620301_69620629_69620666_69622716_69622836_69625819
ENSMUSG00000027088.11_12	chr2	+	4267	3	NIC	ENSMUSG00000027088.11	novel	2260	4	NA	NA	1	-6	intron_retention	FALSE	canonical	3	101	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTATATGTCTTCTGAA	NA	False	NA	19	True	AATAAA	-9	NA	69619980	69627560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_69620301_69620629_69622836_69625819
ENSMUSG00000027088.11_2	chr2	+	2169	4	FSM	ENSMUSG00000027088.11	ENSMUST00000112266.8	2194	4	18	7	8	-6	multi-exon	FALSE	canonical	3	18	junction_1	37.7918274528002	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTATATGTCTTCTGAA	NA	False	NA	19	True	AATAAA	-9	NA	69620011	69627560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_69620249_69620629_69620666_69622680_69622836_69625819
ENSMUSG00000027088.11_6	chr2	+	2141	4	NIC	ENSMUSG00000027088.11	novel	2260	4	NA	NA	-20	-6	combination_of_known_junctions	FALSE	canonical	2	8	junction_2	45.0653845971483	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTATATGTCTTCTGAA	NA	False	NA	19	True	AATAAA	-9	NA	69620035	69627560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_69620301_69620629_69620666_69622736_69622836_69625819
ENSMUSG00000027088.11_7	chr2	+	1539	1	ISM	ENSMUSG00000027088.11	ENSMUST00000028494.9	2260	4	6042	7	4706	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTATATGTCTTCTGAA	NA	False	NA	19	True	AATAAA	-9	NA	69626021	69627560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_69626000_69627600
ENSMUSG00000027091.15_0	chr2	+	2001	10	FSM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	102	8	0	-8	multi-exon	FALSE	canonical	3	620	junction_6	95.2257875645245	992	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCAACTATGGGCCTTT	NA	False	NA	20	True	AATAAA	-28	NA	83474880	83494958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
ENSMUSG00000027099.10_0	chr2	+	1223	10	FSM	ENSMUSG00000027099.10	ENSMUST00000028511.8	2950	10	32	1695	5	232	multi-exon	FALSE	canonical	3	767	junction_7	57.1160827926797	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGTTTCATTTACTT	NA	False	NA	14	True	AATAAA	-12	NA	74656178	74707080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_74656388_74677581_74677630_74678642_74678690_74689748_74689822_74697214_74697292_74698663_74698757_74699226_74699266_74699647_74699774_74700751_74700829_74706646
ENSMUSG00000027099.10_8	chr2	+	2073	8	NIC	ENSMUSG00000027099.10	novel	2950	10	NA	NA	4	229	intron_retention	FALSE	canonical	3	792	junction_1	49.0946607513049	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGAGTTTGTTTCATTTA	NA	False	NA	11	True	AATAAA	-9	NA	74656177	74707077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_74656388_74677581_74677630_74678642_74678690_74689748_74689822_74697214_74697292_74698663_74699774_74700751_74700829_74706646
ENSMUSG00000027102.5_0	chr2	+	2668	2	FSM	ENSMUSG00000027102.5	ENSMUST00000019749.4	2634	2	-39	5	-39	-5	multi-exon	FALSE	canonical	2	3	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGAGCAGAGCTCTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	74535209	74538272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_74536463_74536857
ENSMUSG00000027102.5_2	chr2	+	2097	2	FSM	ENSMUSG00000027102.5	ENSMUST00000074721.6	1758	2	282	-621	282	-5	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGAGCAGAGCTCTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	74535777	74538272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_74536463_74536860
ENSMUSG00000027104.19_0	chr2	-	4136	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112017.8	2396	14	6	-1746	1	0	multi-exon	FALSE	canonical	3	231	junction_5	32.1212569481487	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTATAATTTGCTTGT	NA	False	NA	-10	True	AATAAA	-15	NA	73722893	73646863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
ENSMUSG00000027104.19_2	chr2	-	3741	11	NIC	ENSMUSG00000027104.19	novel	3943	12	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_5	101.64742987405	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATGTTTATAATTTGC	NA	False	NA	-14	True	AATAAA	-11	NA	73722893	73646867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73710628_73710726_73722818
ENSMUSG00000027104.19_5	chr2	-	4040	13	FSM	ENSMUSG00000027104.19	ENSMUST00000112010.9	4037	13	-13	10	1	1	multi-exon	FALSE	canonical	3	85	junction_9	68.6093510795398	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTATAATTTGCTTGTT	NA	False	NA	-9	True	AATAAA	-16	NA	73722893	73646862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73710628_73710726_73722818
ENSMUSG00000027104.19_6	chr2	-	2027	1	ISM	ENSMUSG00000027104.19	ENSMUST00000124737.8	3151	5	26960	10	26960	1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTATAATTTGCTTGTT	NA	False	NA	-9	True	AATAAA	-16	NA	73648889	73646862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_73646900_73648900
ENSMUSG00000027104.19_8	chr2	-	3843	12	FSM	ENSMUSG00000027104.19	ENSMUST00000112016.9	3943	12	89	11	0	0	multi-exon	FALSE	canonical	3	57	junction_5	77.3989343681314	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTATAATTTGCTTGT	NA	False	NA	-10	True	AATAAA	-15	NA	73722894	73646863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
ENSMUSG00000027104.19_9	chr2	-	4195	15	NIC	ENSMUSG00000027104.19	novel	4195	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_12	95.5978236025853	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATGTTTATAATTTGC	NA	False	NA	-14	True	AATAAA	-11	NA	73722893	73646867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722818
ENSMUSG00000027107.4_1	chr2	-	1773	9	FSM	ENSMUSG00000027107.4	ENSMUST00000028515.4	4386	9	29	2584	29	-2584	multi-exon	FALSE	canonical	0	0	junction_4	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGATCCGCCTACG	NA	False	NA	NA	False	AATAAA	-14	NA	73410653	73396142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_73396652_73397045_73397286_73398435_73398660_73400750_73400989_73401756_73401953_73403603_73403714_73404664_73404710_73404829_73404976_73410588
ENSMUSG00000027108.16_0	chr2	-	1709	11	FSM	ENSMUSG00000027108.16	ENSMUST00000028517.13	2175	11	61	405	26	-4	multi-exon	FALSE	canonical	3	336	junction_4	35.4120036145937	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCAGCCTTGGTGTGTT	NA	False	NA	-9	True	AATAAA	-10	NA	73044730	72923549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
ENSMUSG00000027108.16_12	chr2	-	981	8	FSM	ENSMUSG00000027108.16	ENSMUST00000100015.6	905	8	-78	2	1	-2	multi-exon	FALSE	canonical	3	49	junction_1	132.211333609089	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGCGTGTTTTGTTCAA	NA	False	NA	-3	True	AATAAA	-17	NA	73044755	72967872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_72968000_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
ENSMUSG00000027108.16_5	chr2	-	1126	7	ISM	ENSMUSG00000027108.16	ENSMUST00000152608.8	1654	10	57622	6	56156	-4	3prime_fragment	FALSE	canonical	3	336	junction_4	45.2575960475145	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCAGCCTTGGTGTGTT	9920	False	NA	-9	True	AATAAA	-10	NA	72987148	72923549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081
ENSMUSG00000027109.17_0	chr2	-	3881	5	FSM	ENSMUSG00000027109.17	ENSMUST00000133615.2	3870	5	-8	-3	-8	-1	multi-exon	FALSE	canonical	3	322	junction_4	47.8924576525365	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGTTGTAGTCCGAT	4037	False	NA	-3	True	AATAAA	-21	NA	72809638	72766992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809241
ENSMUSG00000027109.17_1	chr2	-	3870	6	ISM	ENSMUSG00000027109.17	ENSMUST00000102689.10	4181	7	704	224	-456	1	3prime_fragment	FALSE	canonical	3	117	junction_5	121.127370977826	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGTTTGTTGTAGTCCG	3589	False	NA	-5	True	AATAAA	-19	NA	72810086	72766994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809241_72809374_72809830
ENSMUSG00000027109.17_2	chr2	-	3969	7	FSM	ENSMUSG00000027109.17	ENSMUST00000102689.10	4181	7	-10	222	-10	-1	multi-exon	FALSE	canonical	3	107	junction_6	141.426561233109	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGTTGTAGTCCGAT	2875	False	NA	-3	True	AATAAA	-21	NA	72810800	72766992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809241_72809374_72809830_72809977_72810593
ENSMUSG00000027109.17_6	chr2	-	3833	6	FSM	ENSMUSG00000027109.17	ENSMUST00000066003.7	3808	6	-30	5	-10	-1	multi-exon	FALSE	canonical	2	7	junction_4	184.227685215876	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGAGTTTGTTGTAGTC	2875	False	NA	-7	True	AATAAA	-17	NA	72810800	72766996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809830_72809977_72810593
ENSMUSG00000027109.17_9	chr2	-	2854	4	ISM	ENSMUSG00000027109.17	ENSMUST00000133615.2	3870	5	8403	-4	-417	0	3prime_fragment	FALSE	canonical	3	407	junction_3	18.3545331972483	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTGTTGTAGTCCGATG	NA	False	NA	-2	True	AATAAA	-22	NA	72801227	72766991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498
ENSMUSG00000027111.17_1	chr2	+	5686	25	NIC	ENSMUSG00000027111.17	novel	4156	26	NA	NA	0	-190	intron_retention	FALSE	canonical	3	444	junction_20	38.1094686032516	1089	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATCGCTTGTTAACACAG	NA	False	NA	28	True	AATAAA	-16	NA	71617283	71688570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352_71664415_71668611_71668773_71668921_71669066_71670905_71671022_71671129_71671320_71671410_71671495_71671592_71671673_71671822_71671901_71671987_71672091_71673472_71673647_71676126_71676226_71676316_71676428_71676507_71676607_71679724_71679851_71686197
ENSMUSG00000027111.17_70	chr2	+	1839	1	ISM	ENSMUSG00000027111.17	ENSMUST00000126787.2	2721	3	7362	187	6954	-187	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGCTTGTTAACACAGCAT	NA	False	NA	31	True	AATAAA	-19	NA	71686734	71688573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_71686700_71688600
ENSMUSG00000027115.15_0	chr2	+	3283	17	FSM	ENSMUSG00000027115.15	ENSMUST00000028527.8	3369	17	83	3	-5	-3	multi-exon	FALSE	canonical	3	273	junction_13	41.1567126967157	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGTTTGGTTTTCCTGT	1459	False	NA	22	True	ATTAAA	-13	NA	109111165	109172089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169022_109171502
ENSMUSG00000027115.15_3	chr2	+	3279	17	NNC	ENSMUSG00000027115.15	novel	3369	17	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_16	78.8546923144083	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGTTTGGTTTTCCTGT	1459	False	NA	22	True	ATTAAA	-13	NA	109111165	109172089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169018_109171502
ENSMUSG00000027122.16_1	chr2	-	3198	5	FSM	ENSMUSG00000027122.16	ENSMUST00000028536.13	3337	5	43	96	16	-96	multi-exon	FALSE	canonical	3	150	junction_1	43.6863823176056	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACAATGCAGGCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	106804726	106792967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804616
ENSMUSG00000027122.16_2	chr2	-	3172	5	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	12	-96	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_4	54.0046294311886	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACAATGCAGGCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	106804730	106792967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
ENSMUSG00000027122.16_3	chr2	-	3741	4	NIC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	24	-96	intron_retention	FALSE	canonical	3	182	junction_3	33.9247533357118	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACAATGCAGGCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	106804718	106792967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804616
ENSMUSG00000027122.16_4	chr2	-	1745	1	ISM	ENSMUSG00000027122.16	ENSMUST00000028536.13	3337	5	10057	96	4910	-96	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACAATGCAGGCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	106794712	106792967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_106793000_106794700
ENSMUSG00000027122.16_5	chr2	-	3724	4	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	8	-99	intron_retention	FALSE	canonical	3	134	junction_3	55.0292851327566	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAATAAACAATGCAGGC	NA	False	NA	NA	False	AATAAA	-11	NA	106804734	106792970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804646
ENSMUSG00000027130.16_15	chr2	+	5988	24	NIC	ENSMUSG00000027130.16	novel	6060	25	NA	NA	29	2	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	19.8360958717408	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAAGTTGTGCTGTAGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	112114950	112193503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_112115151_112163727_112163823_112164713_112164846_112166120_112166268_112167702_112167758_112168203_112168335_112169590_112169833_112172175_112172391_112174173_112174333_112174483_112174583_112174832_112174891_112177243_112177419_112177661_112177781_112179620_112179720_112181623_112181744_112182788_112182894_112183236_112183406_112184518_112184715_112185319_112185490_112186804_112186937_112187828_112187937_112188112_112188298_112188850_112188985_112190760
ENSMUSG00000027130.16_16	chr2	+	6030	25	FSM	ENSMUSG00000027130.16	ENSMUST00000053666.8	6060	25	29	1	29	-1	multi-exon	FALSE	canonical	3	47	junction_1	14.1194679432336	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATAAGTTGTGCTGTAG	NA	False	NA	NA	False	AATAAA	-19	NA	112114950	112193500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_112115151_112146585_112146631_112163727_112163823_112164713_112164846_112166120_112166268_112167702_112167758_112168203_112168335_112169590_112169833_112172175_112172391_112174173_112174333_112174483_112174583_112174832_112174891_112177243_112177419_112177661_112177781_112179620_112179720_112181623_112181744_112182788_112182894_112183236_112183406_112184518_112184715_112185319_112185490_112186804_112186937_112187828_112187937_112188112_112188298_112188850_112188985_112190760
ENSMUSG00000027130.16_31	chr2	+	4882	17	ISM	ENSMUSG00000027130.16	ENSMUST00000053666.8	6060	25	57355	1	-5063	-1	3prime_fragment	FALSE	canonical	3	78	junction_3	9.51232752800281	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATAAGTTGTGCTGTAG	NA	False	NA	NA	False	AATAAA	-19	NA	112172276	112193500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_112172391_112174173_112174333_112174483_112174583_112174832_112174891_112177243_112177419_112177661_112177781_112179620_112179720_112181623_112181744_112182788_112182894_112183236_112183406_112184518_112184715_112185319_112185490_112186804_112186937_112187828_112187937_112188112_112188298_112188850_112188985_112190760
ENSMUSG00000027130.16_4	chr2	+	7190	25	FSM	ENSMUSG00000027130.16	ENSMUST00000028549.14	6105	25	-1086	1	-92	-1	multi-exon	FALSE	canonical	3	33	junction_1	16.1464112799787	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATAAGTTGTGCTGTAG	NA	False	NA	NA	False	AATAAA	-19	NA	112096077	112193500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_112097438_112146585_112146631_112163727_112163823_112164713_112164846_112166120_112166268_112167702_112167758_112168203_112168335_112169590_112169833_112172175_112172391_112174173_112174333_112174483_112174583_112174832_112174891_112177243_112177419_112177661_112177781_112179620_112179720_112181623_112181744_112182788_112182894_112183236_112183406_112184518_112184715_112185319_112185490_112186804_112186937_112187828_112187937_112188112_112188298_112188850_112188985_112190760
ENSMUSG00000027130.16_47	chr2	+	3276	5	ISM	ENSMUSG00000027130.16	ENSMUST00000053666.8	6060	25	71906	1	288	-1	3prime_fragment	FALSE	canonical	3	95	junction_1	5.40254569624358	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATAAGTTGTGCTGTAG	NA	False	NA	NA	False	AATAAA	-19	NA	112186827	112193500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_112186937_112187828_112187937_112188112_112188298_112188850_112188985_112190760
ENSMUSG00000027130.16_49	chr2	+	3018	3	ISM	ENSMUSG00000027130.16	ENSMUST00000137896.2	4464	4	1614	8	1614	-1	3prime_fragment	FALSE	canonical	3	102	junction_1	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATAAGTTGTGCTGTAG	NA	False	NA	NA	False	AATAAA	-19	NA	112188153	112193500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_112188298_112188850_112188985_112190760
ENSMUSG00000027130.16_50	chr2	+	1958	1	ISM	ENSMUSG00000027130.16	ENSMUST00000028549.14	6105	25	94379	1	5003	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATAAGTTGTGCTGTAG	NA	False	NA	NA	False	AATAAA	-19	NA	112191542	112193500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_112191500_112193500
ENSMUSG00000027130.16_7	chr2	+	7119	24	NIC	ENSMUSG00000027130.16	novel	6105	25	NA	NA	-66	-1	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	19.1293477952058	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATAAGTTGTGCTGTAG	NA	False	NA	NA	False	AATAAA	-19	NA	112096103	112193500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_112097438_112163727_112163823_112164713_112164846_112166120_112166268_112167702_112167758_112168203_112168335_112169590_112169833_112172175_112172391_112174173_112174333_112174483_112174583_112174832_112174891_112177243_112177419_112177661_112177781_112179620_112179720_112181623_112181744_112182788_112182894_112183236_112183406_112184518_112184715_112185319_112185490_112186804_112186937_112187828_112187937_112188112_112188298_112188850_112188985_112190760
ENSMUSG00000027131.4_0	chr2	-	944	5	FSM	ENSMUSG00000027131.4	ENSMUST00000028551.4	983	5	24	15	17	-15	multi-exon	FALSE	canonical	3	778	junction_3	24.5395089600424	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGCTTAATGTTTCAC	5021	False	NA	-20	True	AATAAA	-14	NA	112198348	112193370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_112193700_112194136_112194298_112194496_112194651_112197746_112197862_112198163
ENSMUSG00000027132.4_1	chr2	+	2860	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	21	5	6	-5	multi-exon	FALSE	canonical	3	424	junction_7	47.4201082523719	639	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGAATGTGGTGTGCAT	NA	False	NA	5	True	AATAAA	-15	NA	112209576	112244580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
ENSMUSG00000027133.4_0	chr2	+	461	2	FSM	ENSMUSG00000027133.4	ENSMUST00000028553.4	1109	2	42	606	42	-606	multi-exon	FALSE	canonical	3	3938	junction_1	0	747	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTCATTTTGTGTGTTG	NA	False	NA	21	True	ATTAAA	-15	NA	112092312	112093008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_112092423_112092657
ENSMUSG00000027134.5_1	chr2	+	1917	14	FSM	ENSMUSG00000027134.5	ENSMUST00000028554.4	2275	14	357	1	357	-1	multi-exon	FALSE	canonical	3	65	junction_5	5.67252278910358	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCCAGAGGGTGGAATCAT	NA	False	NA	NA	False	NA	NA	NA	112070169	112077455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_112070403_112071795_112071939_112072269_112072491_112072820_112072934_112073045_112073107_112073348_112073408_112073603_112073639_112074185_112074241_112074327_112074411_112074664_112074791_112075007_112075141_112076140_112076240_112076619_112076777_112077056
ENSMUSG00000027160.17_0	chr2	+	1399	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	17	654	17	-2	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	315	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTGTACTCTGTTA	NA	False	NA	31	True	AATAAA	-17	NA	109848178	109875007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
ENSMUSG00000027162.8_0	chr2	+	4139	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	15	74	-2	-74	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGAAACTTCAGATGTCT	NA	False	NA	21	True	AGTAAA	-25	NA	109721212	109731274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
ENSMUSG00000027162.8_15	chr2	+	2506	1	ISM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	7576	69	7559	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTCAGATGTCTGTATT	NA	False	NA	26	True	AGTAAA	-30	NA	109728773	109731279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_109728800_109731300
ENSMUSG00000027162.8_9	chr2	+	4120	4	ISM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	3611	40	3594	-40	3prime_fragment	FALSE	canonical	3	354	junction_3	23.7907545067406	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTCGTAAAATATAAGTAAA	NA	False	NA	-9	True	NA	NA	NA	109724808	109731308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_109724929_109725452_109725525_109726580_109726791_109727590
ENSMUSG00000027163.14_0	chr2	+	1181	6	FSM	ENSMUSG00000027163.14	ENSMUST00000028584.8	1191	6	5	5	-2	-5	multi-exon	FALSE	canonical	3	160	junction_2	9.72830920561225	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATGATGCTGGTCGTGG	NA	False	NA	24	True	AATAAA	-20	NA	101716602	101731986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_101716665_101725479_101725606_101727384_101727525_101729212_101729248_101730213_101730318_101731272
ENSMUSG00000027164.9_0	chr2	+	5431	8	FSM	ENSMUSG00000027164.9	ENSMUST00000004949.8	6169	8	9	729	9	-729	multi-exon	FALSE	canonical	3	72	junction_2	13.2603444409969	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCCCCAATAAATAAATAAAT	NA	False	NA	NA	False	TTTAAA	-13	NA	101508793	101531285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_101508966_101511169_101511373_101514823_101515142_101518808_101518960_101520400_101520560_101521772_101521845_101524599_101524678_101527007
ENSMUSG00000027164.9_1	chr2	+	5237	7	NIC	ENSMUSG00000027164.9	novel	6169	8	NA	NA	5	-724	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8426555195142	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	TTTAAA	-18	NA	101508789	101531290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_101508966_101514823_101515142_101518808_101518960_101520400_101520560_101521772_101521845_101524599_101524678_101527007
ENSMUSG00000027164.9_7	chr2	+	2889	1	ISM	ENSMUSG00000027164.9	ENSMUST00000004949.8	6169	8	19628	713	13853	-713	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAGAAAAGAAAA	NA	False	NA	NA	False	TTTAAA	-29	NA	101528412	101531301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_101528400_101531300
ENSMUSG00000027165.17_0	chr2	-	941	7	FSM	ENSMUSG00000027165.17	ENSMUST00000111231.10	2273	7	-11	1343	8	0	multi-exon	FALSE	canonical	3	119	junction_5	14.4299072146089	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCCTCTGTGGAAATGTA	NA	False	NA	-20	True	AATAAA	-15	NA	101459346	101392468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_101392700_101406356_101406497_101413865_101413933_101415588_101415661_101416656_101416815_101440868_101441021_101459225
ENSMUSG00000027165.17_4	chr2	-	1778	2	FSM	ENSMUSG00000027165.17	ENSMUST00000177007.2	1458	2	9	-329	9	329	multi-exon	FALSE	canonical	3	166	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	101459345	101439362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_101441021_101459225
ENSMUSG00000027166.15_11	chr2	-	1122	4	FSM	ENSMUSG00000027166.15	ENSMUST00000124163.8	697	4	25	-450	25	375	multi-exon	FALSE	canonical	3	9	junction_2	95.3496489534993	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAAAAAAGTGTGAGCCCA	NA	False	NA	NA	False	NA	NA	NA	105833583	105796678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_105797440_105800792_105800862_105832273_105832421_105833438
ENSMUSG00000027166.15_2	chr2	-	1194	4	NIC	ENSMUSG00000027166.15	novel	1197	5	NA	NA	25	377	combination_of_known_junctions	TRUE	canonical	3	14	junction_1	89.3395520223577	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAAGTGTGAGCCCAGT	NA	False	NA	NA	False	NA	NA	NA	105833583	105796676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_105797440_105811326_105811466_105832273_105832421_105833438
ENSMUSG00000027166.15_3	chr2	-	881	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	308	8	22	-8	multi-exon	FALSE	canonical	3	201	junction_2	6.37867541108654	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCAGGTAAGAGTATT	NA	False	NA	-7	True	TATAAA	-11	NA	105833586	105797061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
ENSMUSG00000027167.12_0	chr2	-	1573	10	FSM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	59	1416	-22	-1416	multi-exon	FALSE	canonical	3	175	junction_4	20.3548762623191	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACAGTTTGCCTTAGA	NA	False	NA	NA	False	AATAAA	-17	NA	105734850	105532787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105727246_105727283_105734613
ENSMUSG00000027170.13_0	chr2	-	1241	11	FSM	ENSMUSG00000027170.13	ENSMUST00000028592.12	1283	11	37	5	0	-2	multi-exon	FALSE	canonical	3	1722	junction_10	235.400531010446	1422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTTGACTAATCTAGC	2677	False	NA	-21	True	AGTAAA	-12	NA	104847388	104830005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
ENSMUSG00000027171.11_2	chr2	-	992	6	FSM	ENSMUSG00000027171.11	ENSMUST00000028593.11	2872	6	179	1701	179	-1701	multi-exon	FALSE	canonical	1	4	junction_1	3.61109401705356	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGAATTCACCACAGCTC	NA	False	NA	NA	False	AATAAA	-17	NA	104680042	104662786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_104663156_104669666_104669800_104672399_104672449_104675334_104675499_104679420_104679546_104679890
ENSMUSG00000027173.8_0	chr2	-	1728	9	FSM	ENSMUSG00000027173.8	ENSMUST00000028595.8	1801	9	68	5	68	-5	multi-exon	FALSE	canonical	3	114	junction_7	14.7394029729837	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTATTACTCAGAATG	NA	False	NA	-14	True	AATAAA	-19	NA	104573155	104552133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_104552464_104553220_104553300_104553383_104553510_104553652_104553796_104554914_104555127_104557466_104557657_104558427_104558556_104560528_104560920_104573026
ENSMUSG00000027175.11_0	chr2	-	5479	10	FSM	ENSMUSG00000027175.11	ENSMUST00000111118.8	5474	10	-6	1	0	-1	multi-exon	TRUE	canonical	1	1	junction_6	48.9330608530107	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCTGTAGAATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	104542507	104508362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_104512304_104514438_104514612_104515707_104515890_104518722_104518920_104520838_104520976_104527854_104528076_104528879_104529001_104530186_104530320_104536700_104536888_104542320
ENSMUSG00000027175.11_2	chr2	-	2441	1	ISM	ENSMUSG00000027175.11	ENSMUST00000111118.8	5474	10	31697	2	3807	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTCTGTAGAATTTTGT	NA	False	NA	NA	False	NA	NA	NA	104510804	104508363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_104508400_104510800
ENSMUSG00000027175.11_4	chr2	-	626	3	FSM	ENSMUSG00000027175.11	ENSMUST00000132600.2	630	3	11	-7	1	7	multi-exon	FALSE	canonical	3	159	junction_2	0.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAGAAAGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	104542500	104535287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_104535547_104536700_104536888_104542320
ENSMUSG00000027176.9_0	chr2	+	2817	21	FSM	ENSMUSG00000027176.9	ENSMUST00000028599.8	2817	21	-11	11	-11	-11	multi-exon	TRUE	canonical	3	179	junction_7	45.0891062231222	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGCCTCCTCCTGT	6889	False	NA	8	True	AATAAA	-9	NA	104420856	104495763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_104421048_104439215_104439318_104439435_104439532_104474633_104474667_104475323_104475422_104476744_104476812_104476953_104476989_104477068_104477196_104478514_104478593_104479797_104479961_104481986_104482097_104482789_104482907_104483348_104483424_104484505_104484650_104486033_104486137_104489610_104489681_104490863_104491060_104493638_104493793_104494413_104494509_104494641_104494703_104495061
ENSMUSG00000027176.9_1	chr2	+	620	3	FSM	ENSMUSG00000027176.9	ENSMUST00000122900.2	2589	3	-9	1978	0	-1	multi-exon	FALSE	canonical	3	327	junction_1	20.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGAGTGCTTTAGCCTTT	6900	False	NA	3	True	ATTAAA	-15	NA	104420867	104439773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_104421048_104439215_104439318_104439435
ENSMUSG00000027176.9_3	chr2	+	739	2	FSM	ENSMUSG00000027176.9	ENSMUST00000137961.2	644	2	-96	1	-1	-1	multi-exon	FALSE	canonical	3	327	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGAGTGCTTTAGCCTTT	6899	False	NA	3	True	ATTAAA	-15	NA	104420866	104439773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_104421048_104439215
ENSMUSG00000027177.15_0	chr2	-	7524	16	FSM	ENSMUSG00000027177.15	ENSMUST00000028600.14	7454	16	-75	5	-75	-5	multi-exon	FALSE	canonical	3	39	junction_7	6.77446184824546	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACAGCTTGCTGGCTTT	NA	False	NA	-6	True	ATTAAA	-15	NA	104324866	104256830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_104260677_104261071_104261200_104261496_104261733_104263512_104263654_104263899_104264191_104264682_104264845_104264934_104265063_104265280_104265403_104267341_104267466_104268195_104268353_104269574_104269760_104270550_104270638_104271589_104271710_104276856_104276981_104301093_104302193_104324292
ENSMUSG00000027177.15_1	chr2	-	7515	16	NNC	ENSMUSG00000027177.15	novel	7454	16	NA	NA	-69	-5	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_7	9.18114008897225	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACAGCTTGCTGGCTTT	NA	False	NA	-6	True	ATTAAA	-15	NA	104324860	104256830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_104260677_104261071_104261200_104261496_104261733_104263512_104263654_104263899_104264191_104264682_104264845_104264934_104265060_104265280_104265403_104267341_104267466_104268195_104268353_104269574_104269760_104270550_104270638_104271589_104271710_104276856_104276981_104301093_104302193_104324292
ENSMUSG00000027177.15_10	chr2	-	4570	5	ISM	ENSMUSG00000027177.15	ENSMUST00000028600.14	7454	16	60675	3	5481	-3	3prime_fragment	FALSE	canonical	3	46	junction_4	6.83282518435822	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCTTGCTGGCTTTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	104264116	104256828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_104260677_104261071_104261200_104261496_104261733_104263512_104263654_104263899
ENSMUSG00000027177.15_12	chr2	-	7544	16	FSM	ENSMUSG00000084516.3_ENSMUSG00000027177.15	ENSMUST00000111124.8	4125	16	-123	-3296	-123	-4	multi-exon	FALSE	canonical	2	5	junction_15	13.0833227176178	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACAGCTTGCTGGCTTTT	NA	False	NA	-5	True	ATTAAA	-16	NA	104324158	104256829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_104260677_104261071_104261200_104261496_104261733_104263512_104263654_104263899_104264191_104264682_104264845_104264934_104265063_104265280_104265403_104267341_104267466_104268195_104268353_104269574_104269760_104270550_104270638_104271589_104271710_104276856_104276981_104301093_104302193_104323565
ENSMUSG00000027177.15_14	chr2	-	4036	3	ISM	ENSMUSG00000027177.15	ENSMUST00000028600.14	7454	16	63227	11	8033	-11	3prime_fragment	FALSE	canonical	3	59	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCGGCAAACAGCTTGCT	NA	False	NA	-12	True	ATTAAA	-9	NA	104261564	104256836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_104260677_104261071_104261200_104261496
ENSMUSG00000027177.15_2	chr2	-	2692	1	FSM	ENSMUSG00000084516.3	ENSMUST00000122567.3	80	1	-235	-2377	-235	2377	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCTTGCTGGCTTTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	104259520	104256828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_104256800_104259500
ENSMUSG00000027177.15_7	chr2	-	4696	6	ISM	ENSMUSG00000027177.15	ENSMUST00000028600.14	7454	16	60057	3	4863	-3	3prime_fragment	FALSE	canonical	3	46	junction_4	6.11882341631134	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCTTGCTGGCTTTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	104264734	104256828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_104260677_104261071_104261200_104261496_104261733_104263512_104263654_104263899_104264191_104264682
ENSMUSG00000027180.13_0	chr2	+	2768	11	FSM	ENSMUSG00000027180.13	ENSMUST00000028603.10	4740	11	127	1845	0	-1608	multi-exon	FALSE	canonical	3	178	junction_10	68.8773547691838	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGCCCAAAGCATACACAG	NA	False	NA	26	True	ATTAAA	-22	NA	103858192	103891740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103890226
ENSMUSG00000027180.13_1	chr2	+	2748	11	NIC	ENSMUSG00000027180.13	novel	4740	11	NA	NA	1	3	combination_of_known_junctions	FALSE	canonical	3	77	junction_10	96.8347045227072	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTCTCAACTGTATTTA	NA	False	NA	3	True	NA	NA	NA	103858191	103887838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103886345
ENSMUSG00000027180.13_2	chr2	+	3718	10	FSM	ENSMUSG00000027180.13	ENSMUST00000102565.4	3720	10	-9	11	3	3	multi-exon	FALSE	canonical	3	344	junction_6	33.1058907144937	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTCTCAACTGTATTTA	NA	False	NA	3	True	NA	NA	NA	103858195	103887838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180
ENSMUSG00000027184.15_0	chr2	-	4064	19	FSM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	32	2073	-18	4	multi-exon	FALSE	canonical	3	761	junction_18	276.654863648277	1237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTGTGGTTATGGTA	NA	False	NA	-7	True	AATAAA	-21	NA	103627962	103595358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627286_103627807
ENSMUSG00000027184.15_2	chr2	-	3996	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	77	-4	-54	4	multi-exon	FALSE	canonical	3	1559	junction_1	126.714184008996	1835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTGTGGTTATGGTA	NA	False	NA	-7	True	AATAAA	-21	NA	103627372	103595358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
ENSMUSG00000027184.15_3	chr2	-	1353	1	ISM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	31283	2073	5427	4	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTGTGGTTATGGTA	9155	False	NA	-7	True	AATAAA	-21	NA	103596711	103595358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_103595400_103596700
ENSMUSG00000027184.15_55	chr2	-	3439	17	ISM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	77	2095	-54	-6	5prime_fragment	FALSE	canonical	3	1726	junction_3	108.266742354243	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATGAATGAGTACTGG	NA	False	NA	-15	True	NA	NA	NA	103627372	103597457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
ENSMUSG00000027184.15_64	chr2	-	3511	18	ISM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	28	4172	-22	-6	5prime_fragment	FALSE	canonical	3	761	junction_17	279.160307903274	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATGAATGAGTACTGG	NA	False	NA	-15	True	NA	NA	NA	103627966	103597457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627286_103627807
ENSMUSG00000027185.16_3	chr2	-	3815	29	FSM	ENSMUSG00000027185.16	ENSMUST00000028608.13	3879	29	56	8	-10	-4	multi-exon	FALSE	canonical	3	271	junction_25	29.5459474413003	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACCATTTGCCTGCAGT	NA	False	NA	-17	True	AATAAA	-12	NA	103591559	103551608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
ENSMUSG00000027185.16_4	chr2	-	4169	28	NIC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-7	-4	intron_retention	FALSE	canonical	3	271	junction_24	29.0992813585317	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACCATTTGCCTGCAGT	NA	False	NA	-17	True	AATAAA	-12	NA	103591556	103551608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
ENSMUSG00000027187.11_0	chr2	-	2411	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	44	158	9	-158	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	891	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGGACCGTGTTTGGTT	NA	False	NA	-13	True	AATAAA	-11	NA	103315461	103284351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
ENSMUSG00000027189.17_0	chr2	-	5629	5	FSM	ENSMUSG00000027189.17	ENSMUST00000102573.8	5612	5	-25	8	-25	-8	multi-exon	FALSE	canonical	3	89	junction_4	8.0156097709407	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACCATTTGTCTCTCAG	NA	False	NA	-8	True	AATAAA	-11	NA	102231270	102130471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_102134850_102177308_102177329_102187761_102188002_102211208_102211287_102230357
ENSMUSG00000027189.17_1	chr2	-	2289	1	ISM	ENSMUSG00000027189.17	ENSMUST00000102573.8	5612	5	98485	8	97842	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACCATTTGTCTCTCAG	5217	False	NA	-8	True	AATAAA	-11	NA	102132760	102130471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_102130500_102132800
ENSMUSG00000027193.13_0	chr2	-	3680	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	9	-52	at_least_one_novel_splicesite	FALSE	canonical	3	565	junction_1	211.688282609319	1286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTTTTGTGTCTTAA	NA	False	NA	-8	True	AATAAA	-43	NA	94268472	94242078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ENSMUSG00000027193.13_1	chr2	-	3675	14	FSM	ENSMUSG00000027193.13	ENSMUST00000028617.7	3736	14	9	52	9	-52	multi-exon	FALSE	canonical	3	777	junction_1	163.356364354585	1781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTTTTGTGTCTTAA	NA	False	NA	-8	True	AATAAA	-43	NA	94268472	94242078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ENSMUSG00000027194.17_1	chr2	-	4567	25	FSM	ENSMUSG00000027194.17	ENSMUST00000111238.8	4590	25	14	9	4	-9	multi-exon	TRUE	canonical	3	116	junction_1	40.2833497103814	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAAATCATTCCGTGGTG	NA	False	NA	-11	True	AATAAA	-12	NA	94237020	94131120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_94132213_94133889_94134034_94135288_94135409_94153433_94153518_94154706_94154867_94157042_94157164_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
ENSMUSG00000027194.17_28	chr2	-	3403	20	FSM	ENSMUSG00000027194.17	ENSMUST00000094801.5	3408	20	13	-8	4	8	multi-exon	FALSE	canonical	3	95	junction_1	34.6292592408193	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATATAAAAAGAAAGTGAT	NA	False	NA	NA	False	NA	NA	NA	94237020	94158273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_94158831_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
ENSMUSG00000027195.11_0	chr2	-	1828	11	FSM	ENSMUSG00000027195.11	ENSMUST00000028619.5	1902	11	66	8	-5	5	multi-exon	TRUE	canonical	3	670	junction_5	45.0653969249135	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAAGTGTATTTTTGA	NA	False	NA	NA	False	AATAAA	-23	NA	93988243	93863041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
ENSMUSG00000027195.11_2	chr2	-	618	1	ISM	ENSMUSG00000027195.11	ENSMUST00000145967.8	1330	6	33154	9	33154	4	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGAAAGTGTATTTTTG	5707	False	NA	NA	False	AATAAA	-22	NA	93863660	93863042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_93863000_93863700
ENSMUSG00000027198.17_0	chr2	-	2930	15	NIC	ENSMUSG00000027198.17	novel	2871	14	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	84	junction_13	124.260444885995	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCTGTCTAGAATGCTG	NA	False	NA	-13	True	ATTAAA	-17	NA	93652902	93525977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93651954_93652027_93652731
ENSMUSG00000027198.17_1	chr2	-	2858	14	FSM	ENSMUSG00000027198.17	ENSMUST00000028623.13	2871	14	11	2	-4	-2	multi-exon	FALSE	canonical	3	390	junction_9	31.3157237855525	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCTGTCTAGAATGCTG	NA	False	NA	-13	True	ATTAAA	-17	NA	93652902	93525977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93652731
ENSMUSG00000027198.17_9	chr2	-	3048	16	NIC	ENSMUSG00000027198.17	novel	2871	14	NA	NA	-2	-2	combination_of_known_junctions	TRUE	canonical	0	0	junction_13	164.700725222717	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCTGTCTAGAATGCTG	NA	False	NA	-13	True	ATTAAA	-17	NA	93652900	93525977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93650374_93650495_93651954_93652027_93652731
ENSMUSG00000027199.15_5	chr2	-	2352	9	FSM	ENSMUSG00000027199.15	ENSMUST00000028624.9	2389	9	31	6	31	-6	multi-exon	FALSE	canonical	2	6	junction_3	2.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTATGAGTTTGATTTCT	NA	False	NA	NA	False	AATAAA	-20	NA	122441753	122424953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_122426091_122427852_122427970_122428617_122428682_122430859_122431025_122431172_122431311_122432985_122433177_122434062_122434259_122440149_122440369_122441628
ENSMUSG00000027201.17_10	chr2	-	2892	15	NIC	ENSMUSG00000027201.17	novel	2942	16	NA	NA	-8	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	223.92901572068	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACAGCTTACTTGTTGCT	NA	False	NA	-10	True	NA	NA	NA	124965503	124929662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_124930958_124937627_124937680_124937831_124938041_124939896_124939996_124940369_124940439_124940716_124940768_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124957357_124957411_124958584_124958794_124965304
ENSMUSG00000027201.17_2	chr2	-	2836	14	NIC	ENSMUSG00000027201.17	novel	2928	15	NA	NA	-7	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	192.845739620923	324	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTATACAGCTTACTTGT	NA	False	NA	-14	True	NA	NA	NA	124965502	124929666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_124930958_124937627_124937680_124937831_124938041_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124957357_124957411_124958584_124958794_124965304
ENSMUSG00000027201.17_6	chr2	-	2911	15	NIC	ENSMUSG00000027201.17	novel	2999	16	NA	NA	-6	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	185.119500841583	422	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACAGCTTACTTGTTGCT	NA	False	NA	-10	True	NA	NA	NA	124965501	124929662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124957357_124957411_124958584_124958794_124965304
ENSMUSG00000027201.17_7	chr2	-	1521	3	ISM	ENSMUSG00000027201.17	ENSMUST00000089825.13	1631	15	20789	-1092	-7073	0	3prime_fragment	FALSE	canonical	3	668	junction_1	10	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGCTTACTTGTTGCTT	NA	False	NA	-9	True	NA	NA	NA	124938004	124929661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_124930958_124937627_124937680_124937831
ENSMUSG00000027201.17_9	chr2	-	2966	16	NIC	ENSMUSG00000027201.17	novel	2071	19	NA	NA	6	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	215.150634569261	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTATACAGCTTACTTGT	NA	False	NA	-14	True	NA	NA	NA	124965509	124929666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124940439_124940716_124940768_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124957357_124957411_124958584_124958794_124965304
ENSMUSG00000027203.16_0	chr2	+	941	7	FSM	ENSMUSG00000027203.16	ENSMUST00000082122.14	1020	7	60	19	60	-19	multi-exon	TRUE	canonical	3	52	junction_1	864.28364685572	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATATGATTTTACATAAAC	NA	False	NA	13	True	AATAAA	-14	NA	125089169	125099649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_125089322_125089683_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
ENSMUSG00000027203.16_1	chr2	+	836	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	235	879	-183	-19	multi-exon	FALSE	canonical	3	2160	junction_3	102.069780052668	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATATGATTTTACATAAAC	NA	False	NA	13	True	AATAAA	-14	NA	125089636	125099649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
ENSMUSG00000027203.16_16	chr2	+	502	3	ISM	ENSMUSG00000027203.16	ENSMUST00000082122.14	1020	7	9676	19	8966	-19	3prime_fragment	FALSE	canonical	3	2404	junction_2	25	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATATGATTTTACATAAAC	NA	False	NA	13	True	AATAAA	-14	NA	125098785	125099649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_125098844_125098989_125099061_125099276
ENSMUSG00000027203.16_18	chr2	+	238	1	ISM	ENSMUSG00000027203.16	ENSMUST00000082122.14	1020	7	10304	17	9594	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGATTTTACATAAACTG	NA	False	NA	15	True	AATAAA	-16	NA	125099413	125099651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_125099400_125099700
ENSMUSG00000027204.14_1	chr2	-	2352	8	ISM	ENSMUSG00000027204.14	ENSMUST00000028633.13	9847	66	193472	1	193159	-1	3prime_fragment	FALSE	canonical	0	0	junction_5	1.57790871674104	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCTGCTTTGTTATCTGT	NA	False	NA	NA	False	AATAAA	-19	NA	125154833	125142514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_125143896_125145005_125145181_125148189_125148422_125150389_125150510_125151300_125151430_125151676_125151794_125154419_125154543_125154758
ENSMUSG00000027204.14_3	chr2	-	9894	66	FSM	ENSMUSG00000027204.14	ENSMUST00000028633.13	9847	66	-53	6	-53	-6	multi-exon	TRUE	canonical	0	0	junction_5	1.38033526499434	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATCCCTGCTTTGTTA	NA	False	NA	NA	False	AATAAA	-14	NA	125348358	125142519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_125143896_125145005_125145181_125148189_125148422_125150389_125150510_125151300_125151430_125151676_125151794_125154419_125154543_125154758_125154885_125156513_125156721_125157278_125157405_125158886_125159019_125159331_125159455_125160916_125161037_125162782_125162900_125163115_125163182_125163535_125163686_125166745_125166872_125170012_125170133_125170910_125171040_125172452_125172570_125174177_125174304_125177284_125177408_125180352_125180479_125183175_125183248_125183922_125184082_125184719_125184843_125185724_125185851_125185944_125186014_125187774_125187940_125188249_125188373_125190026_125190150_125192165_125192292_125193601_125193725_125193872_125193996_125200725_125200852_125202027_125202154_125203103_125203227_125204381_125204508_125204594_125204721_125205531_125205661_125205781_125205908_125207403_125207632_125209502_125209629_125211253_125211305_125211713_125211852_125212065_125212186_125212695_125212822_125214310_125214437_125215830_125215885_125219706_125219860_125220926_125221050_125223904_125224028_125225530_125225657_125229185_125229306_125231090_125231232_125231799_125231986_125236531_125236691_125239697_125239824_125245023_125245150_125254525_125254724_125308522_125308619_125310462_125310559_125319416_125319516_125321109_125321193_125347359_125347710_125348258
ENSMUSG00000027206.14_0	chr2	-	3068	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	143	-1138	0	-160	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTATAAAAGTATGTGTA	NA	False	NA	66	True	AATAAA	-10	NA	125700916	125672383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUSG00000027206.14_2	chr2	-	3092	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	142	158	-1	-158	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATAAAAGTATGTGTATT	NA	False	NA	68	True	AATAAA	-12	NA	125700917	125672381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUSG00000027207.16_1	chr2	+	1837	10	FSM	ENSMUSG00000027207.16	ENSMUST00000028636.13	2605	10	49	719	35	-7	multi-exon	FALSE	canonical	3	11	junction_1	32.0916896284673	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGAACTGTGTGTTGCTC	NA	False	NA	1	True	ATTAAA	-8	NA	125701102	125825500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_125701298_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
ENSMUSG00000027207.16_3	chr2	+	1770	10	FSM	ENSMUSG00000027207.16	ENSMUST00000094604.9	1928	10	153	5	6	-5	multi-exon	FALSE	canonical	3	86	junction_4	15.4040238449986	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAACTGTGTGTTGCTCTT	NA	False	NA	3	True	ATTAAA	-10	NA	125708179	125825502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_125708306_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
ENSMUSG00000027210.21_13	chr2	-	3519	12	FSM	ENSMUSG00000027210.21	ENSMUST00000102538.11	2810	12	-714	5	78	-5	multi-exon	FALSE	canonical	0	0	junction_2	18.227216050694	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTAGGCTTTGGTGTTTTT	NA	False	NA	-1	True	AATAAA	-20	NA	115896242	115693549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_115694995_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
ENSMUSG00000027210.21_16	chr2	-	3602	12	FSM	ENSMUSG00000027210.21	ENSMUST00000028639.13	2831	12	-782	11	10	-11	multi-exon	FALSE	canonical	0	0	junction_2	18.227216050694	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTGTTAGGCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	115896310	115693555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_115694995_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
ENSMUSG00000027210.21_25	chr2	-	2562	11	ISM	ENSMUSG00000027210.21	ENSMUST00000028639.13	2831	12	1639	11	-878	-11	3prime_fragment	FALSE	canonical	0	0	junction_2	17.5809556054271	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTGTTAGGCTTTGGT	663	False	NA	-7	True	AATAAA	-14	NA	115893889	115693555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_115694995_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668
ENSMUSG00000027210.21_29	chr2	-	2244	9	ISM	ENSMUSG00000027210.21	ENSMUST00000110906.9	3229	13	5155	-69	-724	-12	3prime_fragment	FALSE	canonical	0	0	junction_3	20.0806965765633	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTTGTTAGGCTTTGG	4505	False	NA	-8	True	AATAAA	-13	NA	115890047	115693556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_115694995_115697290_115697386_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994
ENSMUSG00000027210.21_30	chr2	-	2381	11	ISM	ENSMUSG00000027210.21	ENSMUST00000074285.8	2844	13	2954	-225	802	-11	3prime_fragment	FALSE	canonical	0	0	junction_3	18.0930926046378	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTGTTAGGCTTTGGT	2513	False	NA	-7	True	AATAAA	-14	NA	115892039	115693555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_115694995_115697290_115697386_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931
ENSMUSG00000027210.21_35	chr2	-	2997	14	NNC	ENSMUSG00000027210.21	novel	2844	13	NA	NA	-68	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	19.7283324331205	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTGTTAGGCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	115895061	115693555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_115694995_115697290_115697386_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115894572_115894749_115894888
ENSMUSG00000027210.21_46	chr2	-	2859	12	NIC	ENSMUSG00000027210.21	novel	3229	13	NA	NA	92	-11	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	17.807046613375	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTGTTAGGCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	115894857	115693555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_115694995_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115894572
ENSMUSG00000027210.21_6	chr2	-	2688	12	NIC	ENSMUSG00000027210.21	novel	2844	13	NA	NA	242	-11	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	17.807046613375	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTGTTAGGCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	115894707	115693555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_115694995_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115894572
ENSMUSG00000027210.21_7	chr2	-	2912	13	FSM	ENSMUSG00000027210.21	ENSMUST00000074285.8	2844	13	163	-231	119	-5	multi-exon	FALSE	canonical	0	0	junction_3	17.4825309634758	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTAGGCTTTGGTGTTTTT	NA	False	NA	-1	True	AATAAA	-20	NA	115894830	115693549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_115694995_115697290_115697386_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115894572
ENSMUSG00000027210.21_9	chr2	-	3682	13	FSM	ENSMUSG00000027210.21	ENSMUST00000110908.9	3697	13	10	5	10	-5	multi-exon	FALSE	canonical	0	0	junction_3	17.8535710713571	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTAGGCTTTGGTGTTTTT	NA	False	NA	-1	True	AATAAA	-20	NA	115896310	115693549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_115694995_115697290_115697386_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
ENSMUSG00000027215.14_0	chr2	-	1763	10	FSM	ENSMUSG00000027215.14	ENSMUST00000028644.11	1824	10	60	1	1	-1	multi-exon	TRUE	canonical	2	9	junction_8	1.4229164972073	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAGTCTGAAGAGGCGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	93292787	93249456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93292674
ENSMUSG00000027217.14_1	chr2	-	3677	11	NNC	ENSMUSG00000027217.14	novel	3751	10	NA	NA	1	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	17.7932571498307	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCAGATTGTTTCTCATTG	NA	False	NA	-16	True	TATAAA	-11	NA	93164849	93032109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_93033536_93033621_93034768_93036044_93036129_93040138_93040322_93041168_93041268_93042162_93042238_93050363_93050559_93053056_93053130_93054841_93054924_93142291_93142373_93164616
ENSMUSG00000027217.14_2	chr2	-	3751	10	FSM	ENSMUSG00000027217.14	ENSMUST00000111265.9	3751	10	-3	3	-3	-3	multi-exon	FALSE	canonical	3	49	junction_2	5.53774924194538	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGATTGTTTCTCATTGGT	NA	False	NA	-14	True	TATAAA	-13	NA	93164835	93032107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_93034768_93036044_93036129_93040138_93040322_93041168_93041268_93042162_93042238_93050363_93050559_93053056_93053130_93054841_93054924_93142291_93142373_93164616
ENSMUSG00000027217.14_5	chr2	-	3694	11	NNC	ENSMUSG00000027217.14	novel	3751	10	NA	NA	-20	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	17.7932571498307	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTGTTTCTCATTGGTTG	NA	False	NA	-12	True	TATAAA	-15	NA	93164870	93032105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_93033472_93033565_93034768_93036044_93036129_93040138_93040322_93041168_93041268_93042162_93042238_93050363_93050559_93053056_93053130_93054841_93054924_93142291_93142373_93164616
ENSMUSG00000027220.3_1	chr2	+	2681	3	ISM	ENSMUSG00000027220.3	ENSMUST00000028648.3	3761	6	30923	340	30923	-340	3prime_fragment	FALSE	canonical	1	1	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCGGGTTGGCAGCCCAGT	NA	False	NA	1	True	AATAAA	-10	NA	92776365	92786063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_92776561_92781646_92781777_92783707
ENSMUSG00000027220.3_3	chr2	+	3381	6	FSM	ENSMUSG00000027220.3	ENSMUST00000028648.3	3761	6	40	340	40	-340	multi-exon	FALSE	canonical	1	1	junction_4	1.85472369909914	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCGGGTTGGCAGCCCAGT	NA	False	NA	1	True	AATAAA	-10	NA	92745482	92786063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_92745715_92771097_92771324_92773396_92773532_92776258_92776561_92781646_92781777_92783707
ENSMUSG00000027222.15_1	chr2	+	1194	11	FSM	ENSMUSG00000027222.15	ENSMUST00000028650.9	1392	11	196	2	9	-1	multi-exon	FALSE	canonical	3	202	junction_1	17.2869893272368	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCATGTGGCTCTGTGTCA	NA	False	NA	19	True	AATAAA	-19	NA	92205846	92211560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_92206021_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
ENSMUSG00000027222.15_2	chr2	+	1639	10	ISM	ENSMUSG00000027222.15	ENSMUST00000155891.8	1167	11	577	0	-53	0	3prime_fragment	FALSE	canonical	3	204	junction_5	16.4008430978711	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATGTGGCTCTGTGTCAT	NA	False	NA	20	True	AATAAA	-20	NA	92205597	92211561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
ENSMUSG00000027223.16_0	chr2	-	2605	10	ISM	ENSMUSG00000027223.16	ENSMUST00000111279.9	3274	12	3440	-1	3440	1	3prime_fragment	FALSE	canonical	3	69	junction_2	10.4822012578407	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAGTGGGTGTATTTAC	NA	False	NA	-5	True	ATTAAA	-19	NA	92219636	92214019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_92214767_92215068_92215168_92215268_92215340_92215491_92215609_92215757_92215868_92216139_92216313_92216707_92216784_92216915_92217729_92217898_92217981_92219319
ENSMUSG00000027223.16_1	chr2	-	2966	12	FSM	ENSMUSG00000027223.16	ENSMUST00000050312.3	2930	12	-31	-5	-31	1	multi-exon	FALSE	canonical	3	50	junction_10	15.2158030073021	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAGTGGGTGTATTTAC	NA	False	NA	-5	True	ATTAAA	-19	NA	92231639	92214019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_92214767_92215068_92215168_92215268_92215340_92215491_92215609_92215757_92215868_92216139_92216313_92216707_92216784_92216915_92217729_92217898_92217981_92219319_92219626_92221380_92221487_92231373
ENSMUSG00000027224.15_0	chr2	-	1480	9	NIC	ENSMUSG00000027224.15	novel	1506	10	NA	NA	6	-8	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	0.484122918275927	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGCTAAGGCTCTGAA	8869	False	NA	NA	False	AATAAA	-6	NA	122144205	122134040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_122134480_122135106_122135325_122135543_122135758_122136034_122136170_122136791_122136850_122137160_122137345_122138371_122138432_122143412_122143530_122144150
ENSMUSG00000027227.8_0	chr2	+	2283	9	FSM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	67	2	67	-2	multi-exon	FALSE	canonical	3	111	junction_3	10.5763592507063	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGTATGTGGTTTGTGC	NA	False	NA	14	True	AATAAA	-17	NA	122065296	122095819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_122065440_122076962_122076997_122079279_122079445_122083667_122083828_122087322_122087442_122089545_122089612_122090660_122090837_122093668_122093791_122094521
ENSMUSG00000027227.8_15	chr2	+	1556	3	ISM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	25471	2	25471	-2	3prime_fragment	FALSE	canonical	3	124	junction_2	7	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGTATGTGGTTTGTGC	NA	False	NA	14	True	AATAAA	-17	NA	122090700	122095819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_122090837_122093668_122093791_122094521
ENSMUSG00000027227.8_17	chr2	+	907	1	ISM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	29679	6	29679	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGACTCCGTATGTGGTTT	NA	False	NA	10	True	AATAAA	-13	NA	122094908	122095815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_122094900_122095800
ENSMUSG00000027229.6_0	chr2	+	2008	7	FSM	ENSMUSG00000027229.6	ENSMUST00000028661.6	2115	7	5	102	5	-102	multi-exon	FALSE	canonical	3	14	junction_3	42.3910367884533	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTACACTAAGTTGTTT	1950	False	NA	NA	False	ATTAAA	-11	NA	122016757	122036776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_122016834_122016944_122017027_122018390_122018531_122021087_122021150_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_1	chr2	+	1965	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	3	-7	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	38.5725290848293	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAACAAATGTTTCTCA	1948	False	NA	NA	False	AATAAA	-8	NA	122016755	122036871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_122016834_122016944_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_11	chr2	+	1861	4	NIC	ENSMUSG00000027229.6	novel	448	5	NA	NA	-51	-12	combination_of_known_splicesites	FALSE	canonical	3	63	junction_1	28.5228952870419	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTCCAACAAAACAAATGTT	2096	False	NA	NA	False	AATAAA	-3	NA	122016903	122036866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_122017027_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_12	chr2	+	2097	6	ISM	ENSMUSG00000027229.6	ENSMUST00000028661.6	2115	7	122	7	-80	-7	3prime_fragment	FALSE	canonical	3	14	junction_2	46.343931641586	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAACAAATGTTTCTCA	2067	False	NA	NA	False	AATAAA	-8	NA	122016874	122036871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_122017027_122018390_122018531_122021087_122021150_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_13	chr2	+	2038	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-88	-12	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	51.9055632856441	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTCCAACAAAACAAATGTT	2059	False	NA	NA	False	AATAAA	-3	NA	122016866	122036866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_122017027_122018390_122018531_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_14	chr2	+	1963	5	FSM	ENSMUSG00000027229.6	ENSMUST00000149861.2	448	5	-86	-1429	-86	-7	multi-exon	FALSE	canonical	3	28	junction_1	43.0486643230658	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAACAAATGTTTCTCA	2061	False	NA	NA	False	AATAAA	-8	NA	122016868	122036871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_2	chr2	+	1810	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	9	-94	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAGTTGTTTACATTGGT	1954	False	NA	NA	False	ATTAAA	-19	NA	122016761	122036784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_3	chr2	+	1960	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	2	-91	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	46.4439447075719	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGTTTACATTGGTATT	1947	False	NA	NA	False	ATTAAA	-22	NA	122016754	122036787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_122016834_122016944_122017027_122018390_122018531_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027230.10_0	chr2	-	2008	10	ISM	ENSMUSG00000027230.10	ENSMUST00000028663.5	2603	12	28915	13	28915	-13	3prime_fragment	FALSE	canonical	3	8	junction_9	4.13058451009802	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCAGCATCAACCTTGAC	NA	False	NA	NA	False	ATTAAA	-12	NA	91825932	91812685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_91813353_91813509_91813778_91816505_91816633_91817380_91817481_91821051_91821121_91821253_91821313_91821470_91821621_91822231_91822390_91823615_91823695_91825601
ENSMUSG00000027230.10_1	chr2	-	2603	12	FSM	ENSMUSG00000027230.10	ENSMUST00000028663.5	2603	12	-8	8	-8	-8	multi-exon	FALSE	canonical	2	4	junction_10	5.08603662934522	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATCAACCTTGACTCTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	91854855	91812680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91813353_91813509_91813778_91816505_91816633_91817380_91817481_91821051_91821121_91821253_91821313_91821470_91821621_91822231_91822390_91823615_91823695_91825601_91825787_91832189_91832419_91854348
ENSMUSG00000027233.5_17	chr2	-	2804	2	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	6	56390	6	-56390	5prime_fragment	FALSE	canonical	3	24	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	122016664	122006978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_122009730_122016611
ENSMUSG00000027233.5_2	chr2	-	1477	11	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	60052	7	60052	-7	3prime_fragment	FALSE	canonical	3	37	junction_10	25.8797217913949	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTGCTTCCGTGTTGCC	NA	False	NA	-7	True	AATAAA	-13	NA	121956618	121950595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199_121956354_121956581
ENSMUSG00000027233.5_3	chr2	-	1142	8	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	61033	7	61033	-7	3prime_fragment	FALSE	canonical	3	96	junction_6	12.4408806040441	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTGCTTCCGTGTTGCC	209	False	NA	-7	True	AATAAA	-13	NA	121955637	121950595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562
ENSMUSG00000027233.5_32	chr2	-	2560	8	NIC	ENSMUSG00000027233.5	novel	2434	18	NA	NA	60384	-6	intron_retention	FALSE	canonical	3	83	junction_7	12.4670995595837	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGCTTCCGTGTTGCCA	NA	False	NA	-6	True	AATAAA	-14	NA	121956286	121950594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199
ENSMUSG00000027233.5_4	chr2	-	1363	10	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	60394	7	60394	-7	3prime_fragment	FALSE	canonical	3	83	junction_9	15.8449275288675	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTGCTTCCGTGTTGCC	NA	False	NA	-7	True	AATAAA	-13	NA	121956276	121950595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199
ENSMUSG00000027236.9_0	chr2	+	1795	8	FSM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	40	3578	40	-3578	multi-exon	FALSE	canonical	3	888	junction_1	160.980921673524	716	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTTTGTGTTATATCC	NA	False	NA	NA	False	AATAAA	-18	NA	121859066	121883501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222_121882297_121882447
ENSMUSG00000027238.18_1	chr2	-	2897	1	Genic_Genomic	ENSMUSG00000027238.18	novel	NA	NA	NA	NA	3860	934	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTGTGCTCTATTAAT	2995	False	NA	NA	False	AATAAA	-15	NA	121377972	121375075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_121375100_121378000
ENSMUSG00000027238.18_3	chr2	-	5067	14	NNC	ENSMUSG00000027238.18	novel	2222	14	NA	NA	-10	-11	intron_retention	FALSE	non_canonical	0	0	junction_13	8.85250608050203	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACCGTAAGAGAATGGG	NA	False	NA	NA	False	AATAAA	-6	NA	121637548	121376020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_121379714_121383818_121383926_121384745_121384815_121386050_121386126_121387797_121387890_121388304_121388369_121393365_121393455_121399373_121399462_121404025_121404150_121406802_121406901_121416386_121416466_121416909_121416953_121422138_121422247_121637210
ENSMUSG00000027239.15_0	chr2	-	725	5	FSM	ENSMUSG00000027239.15	ENSMUST00000069423.13	773	5	48	0	-33	0	multi-exon	FALSE	canonical	3	1617	junction_4	477.436121381699	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762077	91760172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762038
ENSMUSG00000027239.15_1	chr2	-	858	5	FSM	ENSMUSG00000027239.15	ENSMUST00000090602.6	714	5	-6	-138	-6	0	multi-exon	FALSE	canonical	3	492	junction_4	939.630878324036	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762050	91760172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761878
ENSMUSG00000027239.15_2	chr2	-	1043	5	FSM	ENSMUSG00000027239.15	ENSMUST00000028672.13	1054	5	11	0	11	0	multi-exon	FALSE	canonical	3	113	junction_4	1100.19691419309	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762631	91760172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762274
ENSMUSG00000027239.15_3	chr2	-	686	4	ISM	ENSMUSG00000027239.15	ENSMUST00000111309.8	771	5	240	23	240	0	3prime_fragment	FALSE	canonical	3	2268	junction_3	242.697342383472	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91761793	91760172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716
ENSMUSG00000027242.15_1	chr2	+	3778	12	ISM	ENSMUSG00000027242.15	ENSMUST00000028676.12	2789	13	5	4146	5	-3751	5prime_fragment	FALSE	canonical	3	31	junction_10	7.93673330389714	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATTGGCTCAACAGTT	NA	False	NA	NA	False	NA	NA	NA	121337208	121369739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587
ENSMUSG00000027242.15_10	chr2	+	2574	9	ISM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	-6	10210	-6	10	5prime_fragment	FALSE	canonical	3	27	junction_1	9.78439446261239	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTTAAGTTTGCACTGG	NA	False	NA	NA	False	AATAAA	-21	NA	121340322	121363280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766
ENSMUSG00000027242.15_23	chr2	+	802	1	ISM	ENSMUSG00000027242.15	ENSMUST00000028676.12	2789	13	35683	197	32558	-197	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTGTTTTGCGTCAT	9221	False	NA	NA	False	NA	NA	NA	121372886	121373688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_121372900_121373700
ENSMUSG00000027242.15_24	chr2	+	832	1	ISM	ENSMUSG00000027242.15	ENSMUST00000110602.9	4170	13	37241	5	34176	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATAATGTCTTTGAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	121374504	121375336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_121374500_121375300
ENSMUSG00000027242.15_25	chr2	+	2563	9	FSM	ENSMUSG00000027242.15	ENSMUST00000132373.2	3155	9	12	580	-5	-4	multi-exon	FALSE	canonical	3	42	junction_4	5.85101486923423	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCAAAGAATAAAGCTCTT	NA	False	NA	NA	False	AATAAA	-7	NA	121337247	121363266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766
ENSMUSG00000027242.15_3	chr2	+	4198	13	FSM	ENSMUSG00000027242.15	ENSMUST00000028676.12	2789	13	44	-1453	-5	-3	multi-exon	FALSE	canonical	3	31	junction_10	8.00347146902865	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGTCTTTGAGTAAT	NA	False	NA	NA	False	AATAAA	-19	NA	121337247	121375338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781
ENSMUSG00000027242.15_5	chr2	+	3548	14	NNC	ENSMUSG00000027242.15	novel	2789	13	NA	NA	-5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.000197237362	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATAATGTCTTTGAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	121337247	121375336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374114_121374761
ENSMUSG00000027242.15_7	chr2	+	4174	13	FSM	ENSMUSG00000027242.15	ENSMUST00000110602.9	4170	13	-9	5	2	-5	multi-exon	FALSE	canonical	2	6	junction_1	14.1958033704801	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATAATGTCTTTGAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	121337254	121375336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121337330_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781
ENSMUSG00000027243.9_1	chr2	+	2081	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	34.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3393	False	NA	NA	False	NA	NA	NA	91541217	91551890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_91541321_91542424_91543211_91550698
ENSMUSG00000027243.9_13	chr2	+	3787	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	12.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3398	False	NA	NA	False	NA	NA	NA	91541222	91551890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_91541321_91542424_91543211_91548987
ENSMUSG00000027243.9_2	chr2	+	2137	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3427	False	NA	NA	False	NA	NA	NA	91541251	91551890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_91541411_91542424_91543211_91550698
ENSMUSG00000027243.9_3	chr2	+	2313	3	FSM	ENSMUSG00000027243.9	ENSMUST00000090608.6	2308	3	-5	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	26	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3437	False	NA	NA	False	NA	NA	NA	91541261	91551890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91541597_91542424_91543211_91550698
ENSMUSG00000027243.9_4	chr2	+	4057	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	21	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3404	False	NA	NA	False	NA	NA	NA	91541228	91551890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_91541597_91542424_91543211_91548987
ENSMUSG00000027243.9_5	chr2	+	3141	2	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	102	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3437	False	NA	NA	False	NA	NA	NA	91541261	91551890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_91543211_91550698
ENSMUSG00000027244.15_0	chr2	-	3513	16	FSM	ENSMUSG00000027244.15	ENSMUST00000076803.12	3551	16	30	8	-27	-7	multi-exon	TRUE	canonical	3	217	junction_4	20.2170445141937	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATAGCTTCCTATTCC	NA	False	NA	-8	True	AATAAA	-12	NA	91540891	91504970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
ENSMUSG00000027244.15_11	chr2	-	3632	17	FSM	ENSMUSG00000027244.15	ENSMUST00000028678.9	3604	17	-36	8	21	-8	multi-exon	FALSE	canonical	3	29	junction_7	76.9829526583646	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTCATAGCTTCCTATTC	NA	False	NA	-9	True	AATAAA	-11	NA	91540900	91504971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91512370_91512482_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
ENSMUSG00000027244.15_3	chr2	-	3436	15	NIC	ENSMUSG00000027244.15	novel	3551	16	NA	NA	-28	-7	combination_of_known_junctions	FALSE	canonical	3	44	junction_3	59.708176379208	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATAGCTTCCTATTCC	NA	False	NA	-8	True	AATAAA	-12	NA	91540892	91504970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
ENSMUSG00000027244.15_5	chr2	-	3446	16	NIC	ENSMUSG00000027244.15	novel	3551	16	NA	NA	-81	-9	combination_of_known_junctions	FALSE	canonical	3	28	junction_15	61.7638513479635	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTCATAGCTTCCTATT	NA	False	NA	-10	True	AATAAA	-10	NA	91536160	91504972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91535925
ENSMUSG00000027244.15_7	chr2	-	1369	1	ISM	ENSMUSG00000027244.15	ENSMUST00000076803.12	3551	16	34582	8	3701	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATAGCTTCCTATTCC	NA	False	NA	-8	True	AATAAA	-12	NA	91506339	91504970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_91505000_91506300
ENSMUSG00000027245.12_0	chr2	+	215	1	ISM	ENSMUSG00000027245.12	ENSMUST00000110612.8	4170	5	4929	77	1085	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCAGGCTCTTATATTG	NA	False	NA	9	True	TATAAA	-17	NA	121288699	121288914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_121288700_121288900
ENSMUSG00000027246.13_2	chr2	-	1673	11	FSM	ENSMUSG00000027246.13	ENSMUST00000116432.2	1674	11	1	0	1	0	multi-exon	FALSE	canonical	3	70	junction_5	7.95235814082842	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTGCGATCATTAGC	NA	False	NA	-17	True	ATTAAA	-15	NA	121273081	121269507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_121270031_121270107_121270153_121270328_121270501_121270596_121270640_121270714_121270908_121271576_121271653_121271742_121271823_121271907_121272095_121272191_121272305_121272626_121272663_121272876
ENSMUSG00000027246.13_5	chr2	-	1821	9	NIC	ENSMUSG00000027246.13	novel	1674	11	NA	NA	5	0	intron_retention	FALSE	canonical	3	70	junction_3	8.70254991367473	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTGCGATCATTAGC	NA	False	NA	-17	True	ATTAAA	-15	NA	121273077	121269507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121270153_121270328_121270501_121270596_121270908_121271576_121271653_121271742_121271823_121271907_121272095_121272191_121272305_121272626_121272663_121272876
ENSMUSG00000027246.13_9	chr2	-	1739	10	NIC	ENSMUSG00000027246.13	novel	1674	11	NA	NA	10	0	intron_retention	FALSE	canonical	3	70	junction_4	8.33259255966786	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTGCGATCATTAGC	NA	False	NA	-17	True	ATTAAA	-15	NA	121273072	121269507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121270031_121270107_121270153_121270328_121270501_121270596_121270908_121271576_121271653_121271742_121271823_121271907_121272095_121272191_121272305_121272626_121272663_121272876
ENSMUSG00000027247.17_0	chr2	+	2849	14	FSM	ENSMUSG00000027247.17	ENSMUST00000090614.11	2866	14	4	13	4	11	multi-exon	TRUE	canonical	3	46	junction_2	93.668116113923	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAAAACCCATTTG	NA	False	NA	NA	False	AATAAA	-6	NA	91480570	91502658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91480598_91482108_91482169_91484390_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ENSMUSG00000027247.17_1	chr2	+	2821	14	FSM	ENSMUSG00000027247.17	ENSMUST00000111329.8	3201	14	367	13	5	11	multi-exon	FALSE	canonical	3	195	junction_1	49.9501526672271	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAAAACCCATTTG	NA	False	NA	NA	False	AATAAA	-6	NA	91480571	91502658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91480598_91482108_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ENSMUSG00000027247.17_3	chr2	+	2767	13	FSM	ENSMUSG00000027247.17	ENSMUST00000111331.9	2883	13	103	13	-1	11	multi-exon	FALSE	canonical	3	77	junction_1	81.5357368819887	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAAAACCCATTTG	NA	False	NA	NA	False	AATAAA	-6	NA	91480565	91502658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91480598_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ENSMUSG00000027247.17_4	chr2	+	2835	14	NNC	ENSMUSG00000027247.17	novel	3201	14	NA	NA	6	11	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	87.3500066894048	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAAAACCCATTTG	NA	False	NA	NA	False	AATAAA	-6	NA	91480572	91502658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_91480598_91482093_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ENSMUSG00000027247.17_46	chr2	+	2797	13	ISM	ENSMUSG00000027247.17	ENSMUST00000111329.8	3201	14	1902	13	15	11	3prime_fragment	FALSE	canonical	3	316	junction_1	27.1625763791941	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAAAACCCATTTG	NA	False	NA	NA	False	AATAAA	-6	NA	91482106	91502658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ENSMUSG00000027248.14_0	chr2	+	1887	13	FSM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	175	708	67	-708	multi-exon	FALSE	canonical	3	3731	junction_4	277.160252481404	4417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGTCGTTTTTTTCCCC	NA	False	NA	4	True	AATAAA	-13	NA	121244430	121268460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
ENSMUSG00000027249.16_0	chr2	-	2158	12	ISM	ENSMUSG00000027249.16	ENSMUST00000028681.15	1988	14	785	3	766	-3	3prime_fragment	FALSE	canonical	2	11	junction_5	2.63165724111457	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATCTCAGTGTGCCCAA	NA	False	NA	NA	False	AATAAA	-12	NA	91465974	91455667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_91455919_91456046_91456118_91458666_91458849_91459004_91459179_91459495_91459664_91460294_91460422_91460497_91460612_91460853_91461172_91463320_91463458_91463535_91463642_91465243_91465295_91465515
ENSMUSG00000027249.16_4	chr2	-	1844	13	ISM	ENSMUSG00000027249.16	ENSMUST00000028681.15	1988	14	519	1	500	-1	3prime_fragment	FALSE	canonical	2	10	junction_12	3.05845821725043	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTCAGTGTGCCCAATG	NA	False	NA	NA	False	AATAAA	-14	NA	91466240	91455665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_91455919_91456046_91456118_91458666_91458849_91459004_91459179_91459495_91459664_91460294_91460422_91460497_91460612_91460853_91461172_91463320_91463458_91463535_91463642_91465243_91465295_91465515_91465541_91466122
ENSMUSG00000027253.16_0	chr2	+	2510	13	ISM	ENSMUSG00000027253.16	ENSMUST00000028689.4	7926	38	0	34490	0	2	5prime_fragment	FALSE	canonical	3	17	junction_6	4.83907704698599	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTGAACTGCCTAGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	91287855	91309634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_91288098_91301473_91301621_91303501_91303619_91303902_91304017_91304252_91304370_91304692_91304822_91305050_91305171_91305527_91305654_91306610_91306737_91306928_91307064_91307442_91307569_91307865_91308097_91308854
ENSMUSG00000027253.16_2	chr2	+	3327	12	FSM	ENSMUSG00000027253.16	ENSMUST00000143874.8	3266	12	-53	-8	-53	8	multi-exon	FALSE	canonical	3	17	junction_6	4.85151420513685	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGCCTAGTGTTTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	91287802	91309640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91288098_91301473_91301621_91303501_91303619_91303902_91304017_91304252_91304370_91304692_91304822_91305050_91305171_91305527_91305654_91306610_91306737_91306928_91307064_91307442_91307569_91307865
ENSMUSG00000027253.16_4	chr2	+	8110	38	FSM	ENSMUSG00000027253.16	ENSMUST00000028689.4	7926	38	-63	-121	-63	121	multi-exon	FALSE	canonical	0	0	junction_23	9.67152258747147	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGGCTGGCTTGGAGTC	NA	False	NA	5	True	TATAAA	-17	NA	91287792	91344245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91288098_91301473_91301621_91303501_91303619_91303902_91304017_91304252_91304370_91304692_91304822_91305050_91305171_91305527_91305654_91306610_91306737_91306928_91307064_91307442_91307569_91307865_91308097_91308854_91309012_91310657_91310876_91311037_91311215_91312202_91312326_91316098_91316308_91316432_91316515_91317383_91317490_91318776_91318979_91320702_91320893_91320979_91321112_91322301_91322443_91322689_91322777_91322881_91323054_91324086_91324250_91324365_91324592_91325101_91325406_91327234_91327454_91327600_91327736_91328684_91328794_91331333_91331479_91331725_91331840_91332255_91332392_91335937_91336006_91336345_91336434_91338813_91338956_91341773
ENSMUSG00000027254.14_0	chr2	+	2322	6	NIC	ENSMUSG00000027254.14	novel	11825	7	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	3.63318042491699	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTGTGGTGCTGCCTA	NA	False	NA	9	True	AATAAA	-14	NA	121120082	121139916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_121120354_121121200_121121303_121129077_121129161_121129386_121129528_121137995_121138217_121138412
ENSMUSG00000027254.14_1	chr2	+	4667	3	ISM	ENSMUSG00000027254.14	ENSMUST00000110639.8	10145	6	8976	4	8967	-4	3prime_fragment	FALSE	canonical	0	0	junction_1	3.5	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATGGTGTGGTGCTGCCT	NA	False	NA	8	True	AATAAA	-13	NA	121134910	121139915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_121137854_121137995_121138217_121138412
ENSMUSG00000027254.14_3	chr2	+	1274	1	ISM	ENSMUSG00000027254.14	ENSMUST00000094639.10	11825	7	18562	1397	12699	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTGTGGTGCTGCCTA	NA	False	NA	9	True	AATAAA	-14	NA	121138642	121139916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_121138600_121139900
ENSMUSG00000027255.15_0	chr2	+	2732	16	FSM	ENSMUSG00000027255.15	ENSMUST00000080008.13	3068	16	335	1	-15	-1	multi-exon	FALSE	canonical	3	197	junction_10	19.1619994317457	419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTCCTCTCCGTCCTGCC	5837	False	NA	NA	False	AATAAA	-24	NA	91095653	91107275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
ENSMUSG00000027257.14_0	chr2	+	1828	11	FSM	ENSMUSG00000027257.14	ENSMUST00000028694.12	1862	11	25	9	0	-9	multi-exon	FALSE	canonical	3	29	junction_1	20.1345474247622	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGTGTTGTGAGCGTCT	4775	False	NA	10	True	AATAAA	-7	NA	91087182	91095014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91087272_91090208_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
ENSMUSG00000027257.14_2	chr2	+	1756	10	NIC	ENSMUSG00000027257.14	novel	1862	11	NA	NA	-1	-18	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	17.8519286920123	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACCCCATCAAGTGTTG	4774	False	NA	1	True	ATTAAA	-14	NA	91087181	91095005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_91087272_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
ENSMUSG00000027257.14_3	chr2	+	1813	11	FSM	ENSMUSG00000027257.14	ENSMUST00000168916.8	1859	11	24	22	-1	-21	multi-exon	FALSE	canonical	3	10	junction_1	24.287651183266	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAACCCCATCAAGTG	4774	False	NA	-2	True	ATTAAA	-11	NA	91087181	91095002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91087272_91090212_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
ENSMUSG00000027259.16_0	chr2	+	2519	11	FSM	ENSMUSG00000027259.16	ENSMUST00000119031.8	2477	11	-61	19	-2	0	multi-exon	FALSE	canonical	3	35	junction_1	26.5369553641709	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACACTAAAACAATAAT	NA	False	NA	NA	False	NA	NA	NA	120970917	120987140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120971091_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
ENSMUSG00000027259.16_2	chr2	+	2569	11	NIC	ENSMUSG00000027259.16	novel	2477	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_1	16.3572613844739	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACACTAAAACAATAAT	NA	False	NA	NA	False	NA	NA	NA	120970924	120987140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_120971148_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
ENSMUSG00000027259.16_24	chr2	+	748	1	ISM	ENSMUSG00000027259.16	ENSMUST00000028702.10	2471	10	15497	4	5857	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATGCTTGAATTGCTC	8841	False	NA	NA	False	NA	NA	NA	120986409	120987157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_120986400_120987200
ENSMUSG00000027259.16_6	chr2	+	2391	10	NIC	ENSMUSG00000027259.16	novel	2477	11	NA	NA	-1	-3	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	40.8051679128399	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAACACTAAAACAAT	NA	False	NA	NA	False	NA	NA	NA	120970911	120987137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_120971091_120972573_120972785_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
ENSMUSG00000027263.13_14	chr2	+	3019	17	NIC	ENSMUSG00000027263.13	novel	4250	18	NA	NA	-1	615	combination_of_known_junctions	FALSE	canonical	3	61	junction_3	56.955266163455	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAATTTAGCTATTGTCG	NA	False	NA	24	True	NA	NA	NA	121001719	121028145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_121001953_121004038_121004168_121005820_121005944_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
ENSMUSG00000027263.13_2	chr2	+	3555	18	FSM	ENSMUSG00000027263.13	ENSMUST00000039541.12	4206	18	9	642	9	-641	multi-exon	FALSE	canonical	3	111	junction_12	42.7635326321784	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTATCTCCCTTTGTTT	NA	False	NA	12	True	AATAAA	-13	NA	121001704	121028609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020304_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
ENSMUSG00000027263.13_3	chr2	+	3488	17	NIC	ENSMUSG00000027263.13	novel	4206	18	NA	NA	-4	-642	combination_of_known_junctions	FALSE	canonical	3	61	junction_3	57.8950761615355	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTTATCTCCCTTTGTT	NA	False	NA	11	True	AATAAA	-12	NA	121001716	121028608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_121001953_121004038_121004168_121005820_121005944_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020304_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
ENSMUSG00000027263.13_4	chr2	+	2922	19	FSM	ENSMUSG00000027263.13	ENSMUST00000144076.8	2887	19	-38	3	-7	-3	multi-exon	FALSE	canonical	3	47	junction_18	58.617614173199	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACGTCTGGCCTTGTAGA	NA	False	NA	-1	True	AATAAA	-11	NA	121001682	121029247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020304_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
ENSMUSG00000027263.13_5	chr2	+	2895	19	FSM	ENSMUSG00000027263.13	ENSMUST00000138601.8	2915	19	13	7	7	-7	multi-exon	FALSE	canonical	3	47	junction_18	57.833947056195	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCACCACGTCTGGCCTTG	NA	False	NA	-5	True	AATAAA	-7	NA	121001702	121029243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
ENSMUSG00000027263.13_6	chr2	+	3553	18	FSM	ENSMUSG00000027263.13	ENSMUST00000110658.8	4250	18	55	642	8	-641	multi-exon	FALSE	canonical	3	119	junction_12	41.5047418810901	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTATCTCCCTTTGTTT	NA	False	NA	12	True	AATAAA	-13	NA	121001703	121028609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
ENSMUSG00000027272.6_1	chr2	-	1934	1	ISM	ENSMUSG00000027272.6	ENSMUST00000028728.6	7768	47	108498	15	9309	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAAAAGGGACTTC	203	False	NA	NA	False	AATAAA	-22	NA	120692698	120690764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120690800_120692700
ENSMUSG00000027272.6_3	chr2	-	2766	3	ISM	ENSMUSG00000027272.6	ENSMUST00000153868.2	822	6	4977	-2285	4977	-19	3prime_fragment	FALSE	canonical	3	95	junction_2	11	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTAAAAAGAAAAAAGGGA	NA	False	NA	NA	False	AATAAA	-18	NA	120697030	120690768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120693273_120694798_120694901_120696870
ENSMUSG00000027272.6_37	chr2	-	3437	29	ISM	ENSMUSG00000027272.6	ENSMUST00000028728.6	7768	47	85	46384	-17	-5059	5prime_fragment	FALSE	canonical	3	63	junction_1	8.50472557716339	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTATACTAGCTTTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	120801111	120737133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120737507_120739902_120739990_120741582_120741693_120742478_120742579_120745347_120745503_120745848_120745898_120746904_120747008_120748301_120748355_120751858_120751984_120754612_120754677_120756435_120756538_120756774_120756841_120759866_120759978_120760201_120760264_120761326_120761508_120764784_120764914_120765696_120765797_120771447_120771606_120772957_120773057_120775131_120775221_120776314_120776423_120776754_120776879_120777102_120777166_120778238_120778378_120780520_120780652_120786090_120786202_120791565_120791645_120793844_120794102_120801002
ENSMUSG00000027272.6_6	chr2	-	7665	47	FSM	ENSMUSG00000027272.6	ENSMUST00000028728.6	7768	47	84	19	-18	-19	multi-exon	FALSE	canonical	3	63	junction_19	10.4276243563166	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTAAAAAGAAAAAAGGGA	NA	False	NA	NA	False	AATAAA	-18	NA	120801112	120690768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120693273_120694798_120694901_120696870_120697042_120698706_120698785_120701469_120701527_120703604_120703714_120705846_120705981_120707439_120707540_120711511_120711663_120712701_120712770_120720256_120720354_120722552_120722609_120723548_120723698_120725552_120725647_120726976_120727075_120730981_120731132_120732082_120732177_120734474_120734681_120737324_120737507_120739902_120739990_120741582_120741693_120742478_120742579_120745347_120745503_120745848_120745898_120746904_120747008_120748301_120748355_120751858_120751984_120754612_120754677_120756435_120756538_120756774_120756841_120759866_120759978_120760201_120760264_120761326_120761508_120764784_120764914_120765696_120765797_120771447_120771606_120772957_120773057_120775131_120775221_120776314_120776423_120776754_120776879_120777102_120777166_120778238_120778378_120780520_120780652_120786090_120786202_120791565_120791645_120793844_120794102_120801002
ENSMUSG00000027274.17_0	chr2	-	2951	6	FSM	ENSMUSG00000027274.17	ENSMUST00000110089.9	3178	6	223	4	-12	-4	multi-exon	FALSE	canonical	3	83	junction_3	119.159389055164	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTGTATACAATCCTT	NA	False	NA	-4	True	AATAAA	-16	NA	136733086	136715703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136732962
ENSMUSG00000027274.17_3	chr2	-	1697	4	ISM	ENSMUSG00000027274.17	ENSMUST00000028730.13	2935	6	10646	3	10418	-3	3prime_fragment	FALSE	canonical	3	83	junction_3	5.43650214343336	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTGTATACAATCCTTA	NA	False	NA	-3	True	AATAAA	-17	NA	136722656	136715702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170
ENSMUSG00000027274.17_8	chr2	-	2949	6	FSM	ENSMUSG00000027274.17	ENSMUST00000028730.13	2935	6	-17	3	-10	-3	multi-exon	FALSE	canonical	3	17	junction_5	104.732802884292	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTGTATACAATCCTTA	NA	False	NA	-3	True	AATAAA	-17	NA	136733319	136715702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136733198
ENSMUSG00000027276.8_0	chr2	-	2638	5	ISM	ENSMUSG00000027276.8	ENSMUST00000028735.8	5612	26	31296	8	601	-8	3prime_fragment	FALSE	canonical	3	120	junction_2	17.9077497190462	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATGGAACAGTGTGGA	NA	False	NA	-9	True	AATAAA	-36	NA	136927268	136923383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_136925402_136926201_136926353_136926494_136926627_136926841_136927076_136927165
ENSMUSG00000027276.8_1	chr2	-	5361	26	FSM	ENSMUSG00000027276.8	ENSMUST00000028735.8	5612	26	243	8	243	-8	multi-exon	TRUE	canonical	3	87	junction_14	16.9906327133512	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATGGAACAGTGTGGA	NA	False	NA	-9	True	AATAAA	-36	NA	136958321	136923383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_136925402_136926201_136926353_136926494_136926627_136926841_136927076_136927165_136927276_136927837_136927952_136928996_136929083_136929535_136929564_136930031_136930149_136930315_136930430_136930516_136930631_136931131_136931246_136931684_136931850_136932774_136932926_136933355_136933530_136933869_136933917_136934416_136934531_136935126_136935241_136936372_136936487_136937366_136937487_136938112_136938244_136941975_136942037_136943500_136943756_136948786_136948839_136957323_136957630_136958096
ENSMUSG00000027281.17_10	chr2	+	4799	6	NIC	ENSMUSG00000027281.17	novel	5089	8	NA	NA	73	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	10.8185026690388	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAAGTAAGTTTGTTGT	NA	False	NA	8	True	AATAAA	-16	NA	136734160	136913863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_136734282_136747462_136747521_136842103_136842194_136885919_136885998_136908049_136908151_136909512
ENSMUSG00000027281.17_11	chr2	+	4571	9	NIC	ENSMUSG00000027281.17	novel	5089	8	NA	NA	85	-641	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	9.69535971483266	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAATAGCTTAAAGCGTT	NA	False	NA	NA	False	ATTAAA	-10	NA	136734172	136913229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_136734282_136747462_136747521_136788961_136789170_136842103_136842194_136846853_136846975_136885919_136885998_136888636_136888726_136908049_136908151_136909512
ENSMUSG00000027281.17_13	chr2	+	3114	1	ISM	ENSMUSG00000027281.17	ENSMUST00000135260.8	4906	8	177222	7	163287	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAAGTAAGTTTGTTGT	118	False	NA	8	True	AATAAA	-16	NA	136910749	136913863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_136910700_136913900
ENSMUSG00000027281.17_17	chr2	+	4820	7	NIC	ENSMUSG00000027281.17	novel	4906	8	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	8.41955396021006	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAAGTAAGTTTGTTGT	9752	False	NA	8	True	AATAAA	-16	NA	136733528	136913863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_136733582_136747462_136747521_136842103_136842194_136885919_136885998_136888636_136888726_136908049_136908151_136909512
ENSMUSG00000027281.17_19	chr2	+	4906	7	NIC	ENSMUSG00000027281.17	novel	5089	8	NA	NA	47	-47	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	9.28110386155057	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTACCTGTTTTATGA	NA	False	NA	-32	True	AATAAA	-16	NA	136734134	136913823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_136734282_136747462_136747521_136842103_136842194_136846853_136846975_136885919_136885998_136908049_136908151_136909512
ENSMUSG00000027281.17_2	chr2	+	5061	8	NIC	ENSMUSG00000027281.17	novel	2723	7	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	7.17990392750232	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGTAAGTTTGTTGTGCA	9363	False	NA	11	True	AATAAA	-19	NA	136733139	136913866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_136733310_136747462_136747521_136842103_136842194_136846853_136846975_136885919_136885998_136888636_136888726_136908049_136908151_136909512
ENSMUSG00000027281.17_3	chr2	+	5053	8	FSM	ENSMUSG00000027281.17	ENSMUST00000099311.9	5089	8	29	7	29	-7	multi-exon	FALSE	canonical	3	13	junction_4	4.68170560233541	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAAGTAAGTTTGTTGT	NA	False	NA	8	True	AATAAA	-16	NA	136734116	136913863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_136734282_136747462_136747521_136842103_136842194_136846853_136846975_136885919_136885998_136888636_136888726_136908049_136908151_136909512
ENSMUSG00000027281.17_5	chr2	+	4961	8	NIC	ENSMUSG00000027281.17	novel	2723	7	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	6.90164133096066	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAGTTTGTTGTGCAAT	9737	False	NA	13	True	AATAAA	-21	NA	136733513	136913868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_136733582_136747462_136747521_136842103_136842194_136846853_136846975_136885919_136885998_136888636_136888726_136908049_136908151_136909512
ENSMUSG00000027281.17_6	chr2	+	2780	9	NIC	ENSMUSG00000027281.17	novel	5089	8	NA	NA	14	-61	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	7.20134536041704	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTCAAATCTGTTCCAT	9765	False	NA	NA	False	NA	NA	NA	136733541	136911637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_136733582_136734203_136734282_136747462_136747521_136842103_136842194_136846853_136846975_136885919_136885998_136888636_136888726_136908049_136908151_136909512
ENSMUSG00000027281.17_8	chr2	+	4918	7	ISM	ENSMUSG00000027281.17	ENSMUST00000135260.8	4906	8	607	3	47	-3	3prime_fragment	FALSE	canonical	2	8	junction_3	6.76798016808232	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTAAGTTTGTTGTGCAA	NA	False	NA	12	True	AATAAA	-20	NA	136734134	136913867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_136734282_136747462_136747521_136842103_136842194_136885919_136885998_136888636_136888726_136908049_136908151_136909512
ENSMUSG00000027282.18_0	chr2	+	1086	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	84	1426	8	-4	multi-exon	FALSE	canonical	3	2037	junction_4	251.273534000079	935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGAGGTGATTGGTGT	180	False	NA	44	True	NA	NA	NA	90677582	90695728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_1	chr2	+	1059	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	-34	1256	8	-4	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGAGGTGATTGGTGT	180	False	NA	44	True	NA	NA	NA	90677582	90695728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027284.17_0	chr2	-	4333	28	NIC	ENSMUSG00000027284.17	novel	6384	28	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_26	17.8771144441848	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATGGCTGTTCTCCCTG	6110	False	NA	NA	False	AATAAA	-15	NA	120562003	120548666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560984_120561182_120561674_120561892
ENSMUSG00000027284.17_4	chr2	-	4332	28	NIC	ENSMUSG00000027284.17	novel	6384	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_26	16.0161955070022	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATGGCTGTTCTCCCTG	6114	False	NA	NA	False	AATAAA	-15	NA	120561999	120548666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560987_120561182_120561674_120561892
ENSMUSG00000027284.17_6	chr2	-	4524	27	NIC	ENSMUSG00000027284.17	novel	6384	28	NA	NA	-1	0	intron_retention	FALSE	canonical	3	36	junction_26	16.3125899757205	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATGGCTGTTCTCCCTG	6141	False	NA	NA	False	AATAAA	-15	NA	120561972	120548666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560987_120561182
ENSMUSG00000027284.17_9	chr2	-	4346	27	ISM	ENSMUSG00000027284.17	ENSMUST00000110700.2	5996	28	202	1664	174	0	3prime_fragment	TRUE	canonical	3	17	junction_26	18.2134370710426	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATGGCTGTTCTCCCTG	6316	False	NA	NA	False	AATAAA	-15	NA	120561797	120548666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560984_120561182
ENSMUSG00000027285.14_0	chr2	+	3103	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	44	7	44	-7	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAATGTGGCTCCAATA	NA	False	NA	NA	False	AATAAA	-9	NA	120439907	120452034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
ENSMUSG00000027285.14_1	chr2	+	3034	5	FSM	ENSMUSG00000027285.14	ENSMUST00000028741.14	1430	5	43	-1647	43	-7	multi-exon	FALSE	canonical	3	33	junction_2	111.162887242101	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAATGTGGCTCCAATA	NA	False	NA	NA	False	AATAAA	-9	NA	120439906	120452034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120440027_120442818_120442912_120446335_120446469_120448353_120448463_120449455
ENSMUSG00000027285.14_15	chr2	+	1679	1	ISM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	10492	7	10280	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAATGTGGCTCCAATA	NA	False	NA	NA	False	AATAAA	-9	NA	120450355	120452034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_120450400_120452000
ENSMUSG00000027286.17_0	chr2	-	1930	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102497.10	1962	6	26	6	-14	-6	multi-exon	FALSE	canonical	3	64	junction_5	44.5394207416307	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAACTTTGTCTGGAAGT	NA	False	NA	NA	False	AATAAA	-9	NA	120439810	120434724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439595
ENSMUSG00000027286.17_1	chr2	-	1791	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102499.8	1961	6	166	4	1	-4	multi-exon	FALSE	canonical	3	29	junction_5	57.8321709777525	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTTTGTCTGGAAGTAA	NA	False	NA	NA	False	AATAAA	-11	NA	120439835	120434722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439761
ENSMUSG00000027286.17_15	chr2	-	1833	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102496.8	1848	6	11	4	-2	-4	multi-exon	FALSE	canonical	1	2	junction_5	68.2800117164606	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTTTGTCTGGAAGTAA	NA	False	NA	NA	False	AATAAA	-11	NA	120439785	120434722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439669
ENSMUSG00000027286.17_3	chr2	-	1725	5	ISM	ENSMUSG00000027286.17	ENSMUST00000102496.8	1848	6	285	3	272	-3	3prime_fragment	FALSE	canonical	3	148	junction_3	17.7904468746572	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTTTGTCTGGAAGTAAT	NA	False	NA	NA	False	AATAAA	-12	NA	120439511	120434721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398
ENSMUSG00000027286.17_5	chr2	-	1792	6	NIC	ENSMUSG00000027286.17	novel	1962	6	NA	NA	5	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	69.0582362937253	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAACTTTGTCTGGAAGT	NA	False	NA	NA	False	AATAAA	-9	NA	120439831	120434724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439754
ENSMUSG00000027287.15_0	chr2	+	2018	8	FSM	ENSMUSG00000027287.15	ENSMUST00000110711.9	2723	8	28	677	2	-677	multi-exon	FALSE	canonical	3	373	junction_4	7.72221814385119	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCACTCCAATAGAAAGCT	NA	False	NA	13	True	AATAAA	-18	NA	120398179	120431059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
ENSMUSG00000027287.15_3	chr2	+	1994	8	FSM	ENSMUSG00000027287.15	ENSMUST00000028743.10	2658	8	-9	673	-9	-673	multi-exon	FALSE	canonical	3	42	junction_1	118.449334729914	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCCAATAGAAAGCTGTAT	NA	False	NA	17	True	AATAAA	-22	NA	120398162	120431063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120398243_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
ENSMUSG00000027288.17_0	chr2	-	2230	1	ISM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	54749	9	3807	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTCATTTTGTTATTT	NA	False	NA	-15	True	AATAAA	-12	NA	120339539	120337309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120337300_120339500
ENSMUSG00000027288.17_1	chr2	-	6732	20	NIC	ENSMUSG00000027288.17	novel	9085	22	NA	NA	4	-9	intron_retention	FALSE	canonical	3	389	junction_17	196.49011591164	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTCATTTTGTTATTT	9798	False	NA	-15	True	AATAAA	-12	NA	120394311	120337309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120376323_120376386_120385711_120385797_120394167
ENSMUSG00000027288.17_10	chr2	-	6236	17	ISM	ENSMUSG00000027288.17	ENSMUST00000171215.8	6391	19	7843	-2785	41	-9	3prime_fragment	FALSE	canonical	3	846	junction_10	115.745882756148	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTCATTTTGTTATTT	6295	False	NA	-15	True	AATAAA	-12	NA	120362498	120337309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075
ENSMUSG00000027288.17_126	chr2	-	4389	10	ISM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	-24	19449	3	-6	5prime_fragment	FALSE	canonical	3	679	junction_5	193.010522325585	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCATTTAAGTTTCATTG	9797	False	NA	-9	True	AATAAA	-37	NA	120394312	120356749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120363991_120366161_120369775_120369974_120376323_120376386_120385711_120385797_120394167
ENSMUSG00000027288.17_148	chr2	-	2755	5	ISM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	-19	26590	8	-1524	5prime_fragment	FALSE	canonical	3	681	junction_1	204.702680734767	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATACCCATTGTAGATG	9802	False	NA	NA	False	ATTAAA	-37	NA	120394307	120363890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120366161_120369775_120369974_120376323_120376386_120385711_120385797_120394167
ENSMUSG00000027288.17_2	chr2	-	7705	18	ISM	ENSMUSG00000027288.17	ENSMUST00000171215.8	6391	19	5086	-2785	-2716	-9	3prime_fragment	FALSE	canonical	3	679	junction_17	153.995079236532	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTCATTTTGTTATTT	3538	False	NA	-15	True	AATAAA	-12	NA	120365255	120337309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120363991
ENSMUSG00000027288.17_3	chr2	-	9098	22	FSM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	-23	10	4	-10	multi-exon	FALSE	canonical	3	679	junction_17	176.960671803312	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTTCATTTTGTTATT	9798	False	NA	-16	True	AATAAA	-11	NA	120394311	120337310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120363991_120366161_120369775_120369974_120376323_120376386_120385711_120385797_120394167
ENSMUSG00000027288.17_5	chr2	-	4780	12	ISM	ENSMUSG00000027288.17	ENSMUST00000171215.8	6391	19	15647	-2785	406	-9	3prime_fragment	FALSE	canonical	3	846	junction_10	124.495411313094	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTCATTTTGTTATTT	795	False	NA	-15	True	AATAAA	-12	NA	120354694	120337309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345
ENSMUSG00000027291.16_0	chr2	-	4196	25	FSM	ENSMUSG00000027291.16	ENSMUST00000028752.8	4339	25	5	138	1	-138	multi-exon	FALSE	canonical	3	237	junction_15	25.6031410833385	611	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGTGTGCATACTTAATT	NA	False	NA	-18	True	AATAAA	-18	NA	120183601	120147079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120148591_120149946_120150039_120151132_120151268_120151367_120151518_120152090_120152137_120152338_120152442_120153513_120153643_120154063_120154182_120154671_120154771_120155111_120155186_120155666_120155754_120155866_120156009_120156486_120156631_120159053_120159197_120163870_120164001_120168946_120169068_120169161_120169283_120169799_120169984_120172464_120172558_120173673_120173773_120174605_120174701_120176098_120176142_120176808_120176874_120180644_120180711_120183395
ENSMUSG00000027293.14_0	chr2	-	3385	6	FSM	ENSMUSG00000027293.14	ENSMUST00000028755.8	3730	6	26	319	26	-319	multi-exon	FALSE	canonical	3	216	junction_2	18.4217263034711	510	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTATGTCTCGTGAGTC	NA	False	NA	-16	True	AATATA	-6	NA	119985061	119919974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119922166_119927443_119927609_119932500_119932914_119958072_119958171_119967379_119967557_119984720
ENSMUSG00000027296.8_0	chr2	+	1820	7	FSM	ENSMUSG00000027296.8	ENSMUST00000028758.8	1818	7	-10	8	-10	-8	multi-exon	FALSE	canonical	3	153	junction_1	9.41039614232874	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGACTCCAGCCTCCT	NA	False	NA	15	True	AATAAA	-16	NA	119572807	119581736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119573343_119579670_119579768_119579842_119580060_119580153_119580359_119580574_119580677_119580957_119581030_119581144
ENSMUSG00000027296.8_1	chr2	+	3897	6	ISM	ENSMUSG00000027296.8	ENSMUST00000028758.8	1818	7	4238	11	4238	-11	3prime_fragment	FALSE	canonical	3	155	junction_3	8.97997772825746	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCTGTGACTCCAGCCT	NA	False	NA	12	True	AATAAA	-13	NA	119577055	119581733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119579768_119579842_119580060_119580153_119580359_119580574_119580677_119580957_119581030_119581144
ENSMUSG00000027297.16_3	chr2	-	2402	15	ISM	ENSMUSG00000027297.16	ENSMUST00000028759.13	3080	20	1919	2	7	0	3prime_fragment	FALSE	canonical	3	7	junction_14	8.0156097709407	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTCAGTTCTCTGAGT	NA	False	NA	-12	True	NA	NA	NA	119588993	119581808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119582416_119582546_119582638_119582711_119582847_119582977_119583080_119583175_119583269_119583406_119583505_119583594_119583725_119583907_119583973_119584095_119584187_119584652_119584846_119585058_119585155_119585611_119585765_119586095_119586195_119588459_119588643_119588727
ENSMUSG00000027297.16_9	chr2	-	2229	14	FSM	ENSMUSG00000027297.16	ENSMUST00000182203.3	2232	14	1	2	1	0	multi-exon	FALSE	canonical	3	10	junction_7	7.17243243134772	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTCTTCAGTTCTCTGA	NA	False	NA	-14	True	NA	NA	NA	119589005	119581810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119582416_119582546_119582638_119582711_119582847_119582977_119583080_119583175_119583269_119583406_119583505_119583594_119583725_119583907_119583973_119584095_119584187_119584652_119584846_119585058_119585155_119585611_119585765_119586095_119586195_119588727
ENSMUSG00000027298.18_49	chr2	+	1338	1	ISM	ENSMUSG00000027298.18	ENSMUST00000110783.8	4460	20	19001	33	5888	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAATAAAATTGAAAC	NA	False	NA	NA	False	NA	NA	NA	119647214	119648552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119647200_119648600
ENSMUSG00000027298.18_7	chr2	+	3671	19	NIC	ENSMUSG00000027298.18	novel	3529	8	NA	NA	20	-4	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	57.453819351064	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATAAAGAATCAAAGCT	NA	False	NA	NA	False	AATAAA	-5	NA	119629827	119648568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119629897_119632028_119632213_119632759_119632861_119633720_119633892_119635248_119635336_119636095_119636212_119638315_119638494_119639213_119639360_119639883_119640029_119640385_119640516_119640597_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124
ENSMUSG00000027298.18_9	chr2	+	3748	19	FSM	ENSMUSG00000027298.18	ENSMUST00000028763.10	3989	19	224	17	224	-4	multi-exon	FALSE	canonical	3	227	junction_12	19.4854329889133	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATAAAGAATCAAAGCT	NA	False	NA	NA	False	AATAAA	-5	NA	119630218	119648568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119630365_119632028_119632213_119632759_119632861_119633720_119633892_119635248_119635336_119636095_119636212_119638315_119638494_119639213_119639360_119639883_119640029_119640385_119640516_119640597_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124
ENSMUSG00000027300.11_0	chr2	-	2514	7	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	21	-1332	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_5	32.7078821624934	175	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACAAGGATTCCTCCTAG	NA	False	NA	NA	False	AATAAA	-15	NA	130471926	130433253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
ENSMUSG00000027300.11_1	chr2	-	2366	6	FSM	ENSMUSG00000027300.11	ENSMUST00000028761.5	3731	6	35	1330	24	-1330	multi-exon	TRUE	canonical	3	59	junction_5	36.0477461153953	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGATTCCTCCTAGCA	NA	False	NA	NA	False	AATAAA	-17	NA	130471923	130433251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130471835
ENSMUSG00000027303.19_0	chr2	+	2898	21	FSM	ENSMUSG00000027303.19	ENSMUST00000028769.14	5325	21	7	2420	7	-319	multi-exon	FALSE	canonical	3	182	junction_14	22.4438744427071	344	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTGGAAACTGGGCCAGA	NA	False	NA	18	True	ATTAAA	-36	NA	130292204	130395624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_130292479_130345393_130345473_130345913_130346256_130359650_130359736_130360869_130360944_130361291_130361429_130374008_130374100_130375003_130375081_130377242_130377280_130379471_130379570_130381554_130381675_130382402_130382570_130383214_130383351_130384226_130384377_130385989_130386084_130386340_130386418_130386868_130387004_130391404_130391531_130391610_130391763_130394116_130394253_130395313
ENSMUSG00000027304.10_2	chr2	+	2894	18	FSM	ENSMUSG00000027304.10	ENSMUST00000028767.9	4664	18	29	1741	25	-1741	multi-exon	FALSE	canonical	3	65	junction_14	16.8134482341515	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGGCCTGACTGCTGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	119505577	119564147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119505762_119522596_119522708_119531598_119531747_119535919_119536125_119541445_119541561_119542489_119542602_119550646_119550783_119551555_119551734_119555305_119555389_119557197_119557286_119557373_119557482_119558018_119558097_119558875_119558998_119559159_119559218_119560374_119560453_119561135_119561232_119562884_119562997_119563265
ENSMUSG00000027304.10_26	chr2	+	1459	1	ISM	ENSMUSG00000027304.10	ENSMUST00000028767.9	4664	18	58861	20	7245	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCATTTTAATAAGGGATCA	NA	False	NA	NA	False	AATAAA	-5	NA	119564409	119565868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119564400_119565900
ENSMUSG00000027305.10_0	chr2	-	1451	5	FSM	ENSMUSG00000027305.10	ENSMUST00000028768.2	1451	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	75.083287088406	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACCCTCAGCCTTTTTC	NA	False	NA	-6	True	AATAAA	-16	NA	119493279	119485931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493089
ENSMUSG00000027305.10_1	chr2	-	1466	5	NIC	ENSMUSG00000027305.10	novel	1451	5	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_4	131.115407180087	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACCCTCAGCCTTTTTC	NA	False	NA	-6	True	AATAAA	-16	NA	119493278	119485931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493073
ENSMUSG00000027305.10_2	chr2	-	1300	5	FSM	ENSMUSG00000027305.10	ENSMUST00000110802.8	1308	5	3	5	2	0	multi-exon	FALSE	canonical	3	109	junction_4	88.8453712919249	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACCCTCAGCCTTTTTC	NA	False	NA	-6	True	AATAAA	-16	NA	119493299	119485931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493260
ENSMUSG00000027305.10_3	chr2	-	1182	4	ISM	ENSMUSG00000027305.10	ENSMUST00000028768.2	1451	5	2215	3	2215	-3	3prime_fragment	FALSE	canonical	3	302	junction_2	10.9848380355227	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCTACCCTCAGCCTTT	NA	False	NA	-9	True	AATAAA	-13	NA	119491064	119485934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482
ENSMUSG00000027306.16_0	chr2	+	2144	11	FSM	ENSMUSG00000027306.16	ENSMUST00000068225.15	2960	11	432	384	1	-384	multi-exon	FALSE	canonical	3	927	junction_3	141.2501327433	1493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGTTCATTGTTTTAAGC	NA	False	NA	11	True	AATAAA	-14	NA	119449210	119480257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119464200_119464300_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
ENSMUSG00000027306.16_2	chr2	+	2044	10	FSM	ENSMUSG00000027306.16	ENSMUST00000028771.8	3526	10	13	1469	1	-385	multi-exon	FALSE	canonical	3	97	junction_4	379.300265433633	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGGTTCATTGTTTTAAG	NA	False	NA	10	True	AATAAA	-13	NA	119449210	119480256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
ENSMUSG00000027309.19_0	chr2	-	4959	37	FSM	ENSMUSG00000027309.19	ENSMUST00000044766.15	6628	37	14	1655	-9	1275	multi-exon	FALSE	canonical	3	25	junction_2	14.9720933822533	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130682040	130549774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130551239_130551857_130551952_130552731_130552798_130554179_130554383_130554871_130554947_130555316_130555424_130559180_130559268_130561759_130561896_130569067_130569106_130572708_130572835_130578386_130578546_130579298_130579388_130580900_130581019_130581290_130581390_130582320_130582410_130583736_130583884_130590604_130590709_130606372_130606461_130607607_130607659_130609529_130609601_130612591_130612710_130616978_130617025_130617646_130617692_130619124_130619202_130620336_130620425_130626343_130626381_130627378_130627461_130633771_130633908_130635908_130635965_130640086_130640186_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
ENSMUSG00000027309.19_20	chr2	-	1297	8	Fusion	ENSMUSG00000027309.19_ENSMUSG00000089662.2	novel	1984	7	NA	NA	7	106	multi-exon	TRUE	canonical	3	31	junction_1	16.7063473211928	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACAACATTTTTTTGGTG	NA	False	NA	-8	True	AATAAA	-23	NA	130682045	130645314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_-_130645843_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
ENSMUSG00000027309.19_21	chr2	-	1948	7	FSM	ENSMUSG00000027309.19	ENSMUST00000110243.8	1984	7	25	11	-9	-11	multi-exon	FALSE	canonical	3	61	junction_6	9.03081145609604	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAGAAAAAAGGAAAATAG	NA	False	NA	NA	False	NA	NA	NA	130682040	130647606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
ENSMUSG00000027309.19_3	chr2	-	2209	1	ISM	ENSMUSG00000027309.19	ENSMUST00000044766.15	6628	37	131721	5	11516	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTACCTCTGTCTCTGCCT	NA	False	NA	NA	False	AATAAA	-13	NA	130550333	130548124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_130548100_130550300
ENSMUSG00000027312.15_0	chr2	+	5112	29	FSM	ENSMUSG00000027312.15	ENSMUST00000028781.9	8745	29	-3	3636	-3	-3636	multi-exon	FALSE	canonical	3	35	junction_19	8.33811937392825	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGAAACTTGATTAATTT	NA	False	NA	16	True	TATAAA	-22	NA	130748411	130868617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_130748888_130775305_130775390_130777443_130777558_130786801_130786931_130787933_130788140_130789478_130789648_130798940_130799032_130799824_130800069_130802304_130802489_130803439_130803595_130806763_130806849_130811924_130812146_130814144_130814267_130815296_130815436_130817797_130817989_130821849_130822070_130823823_130824010_130824514_130824749_130828637_130828776_130836040_130836135_130836950_130837004_130841065_130841161_130844681_130844761_130846367_130846526_130855526_130855589_130860532_130860612_130862860_130862969_130864921_130865037_130867736
ENSMUSG00000027312.15_13	chr2	+	3068	1	ISM	ENSMUSG00000027312.15	ENSMUST00000028781.9	8745	29	120762	9	31080	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATGTGCGTGCGTTTCG	NA	False	NA	10	True	AATAAA	-13	NA	130869176	130872244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_130869200_130872200
ENSMUSG00000027312.15_6	chr2	+	3356	20	ISM	ENSMUSG00000027312.15	ENSMUST00000028781.9	8745	29	55084	3636	-21206	-3636	3prime_fragment	FALSE	canonical	3	35	junction_10	8.62836910792555	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGAAACTTGATTAATTT	NA	False	NA	16	True	TATAAA	-22	NA	130803498	130868617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_130803595_130806763_130806849_130811924_130812146_130814144_130814267_130815296_130815436_130817797_130817989_130821849_130822070_130823823_130824010_130824514_130824749_130828637_130828776_130836040_130836135_130836950_130837004_130841065_130841161_130844681_130844761_130846367_130846526_130855526_130855589_130860532_130860612_130862860_130862969_130864921_130865037_130867736
ENSMUSG00000027312.15_9	chr2	+	177	1	ISM	ENSMUSG00000027312.15	ENSMUST00000151364.2	4139	3	931	8159	931	2709	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACACCTATAACT	NA	False	NA	NA	False	NA	NA	NA	130839027	130839204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_130839000_130839200
ENSMUSG00000027313.4_0	chr2	+	1504	3	FSM	ENSMUSG00000027313.4	ENSMUST00000028780.4	1637	3	65	68	65	-68	multi-exon	FALSE	canonical	3	568	junction_2	33	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCTGCCAGAATATGGTT	7217	False	NA	13	True	CATAAA	-13	NA	119181774	119184794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119182118_119182837_119182874_119183669
ENSMUSG00000027313.4_6	chr2	+	932	1	ISM	ENSMUSG00000027313.4	ENSMUST00000028780.4	1637	3	2153	68	2153	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCTGCCAGAATATGGTT	9305	False	NA	13	True	CATAAA	-13	NA	119183862	119184794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119183900_119184800
ENSMUSG00000027315.14_1	chr2	+	2265	11	FSM	ENSMUSG00000027315.14	ENSMUST00000028783.14	2273	11	0	8	0	-8	multi-exon	TRUE	canonical	3	163	junction_1	46.3102580429002	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAAGTGTTGTGTTTG	NA	False	NA	5	True	ATTAAA	-5	NA	119067842	119079987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119067954_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
ENSMUSG00000027315.14_21	chr2	+	2117	10	FSM	ENSMUSG00000027315.14	ENSMUST00000110817.3	2323	10	185	21	185	-8	multi-exon	FALSE	canonical	3	281	junction_4	16.649620912898	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAAGTGTTGTGTTTG	NA	False	NA	5	True	ATTAAA	-5	NA	119068218	119079987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
ENSMUSG00000027315.14_6	chr2	+	2236	11	FSM	ENSMUSG00000027315.14	ENSMUST00000110816.8	1913	11	-14	-309	-14	-10	multi-exon	FALSE	canonical	3	41	junction_1	81.6752104374393	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATAAAGTGTTGTGTT	NA	False	NA	3	True	ATTAAA	-3	NA	119067943	119079985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119068028_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
ENSMUSG00000027316.16_0	chr2	-	1131	4	ISM	ENSMUSG00000027316.16	ENSMUST00000110239.8	810	6	1154	-571	-17	2	intron_retention	FALSE	canonical	3	10	junction_1	4.18993502999218	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCTGGTTTTCTGTCA	NA	False	NA	-3	True	AATAAA	-16	NA	130883448	130881556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_130882179_130882318_130882396_130882935_130883071_130883151
ENSMUSG00000027316.16_4	chr2	-	1117	4	FSM	ENSMUSG00000027316.16	ENSMUST00000156509.2	1125	4	10	-2	10	2	multi-exon	FALSE	canonical	2	5	junction_1	6.48074069840786	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCTGGTTTTCTGTCA	NA	False	NA	-3	True	AATAAA	-16	NA	130883367	130881556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130882246_130882318_130882396_130882935_130883071_130883151
ENSMUSG00000027317.9_1	chr2	-	752	4	FSM	ENSMUSG00000027317.9	ENSMUST00000076084.6	787	4	33	2	-8	-2	multi-exon	FALSE	canonical	3	35	junction_3	4.96655480858378	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGGGAGTGTGGTGTGT	NA	False	NA	NA	False	GATAAA	-16	NA	119060354	119048601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022
ENSMUSG00000027317.9_3	chr2	-	799	5	FSM	ENSMUSG00000027317.9	ENSMUST00000110820.3	790	5	8	-17	8	-4	multi-exon	FALSE	canonical	2	2	junction_4	21.0297408448131	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATAAGGGAGTGTGGTGT	NA	False	NA	NA	False	GATAAA	-14	NA	119060338	119048603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119058237_119058303_119060022
ENSMUSG00000027323.11_0	chr2	+	1767	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	34	1567	24	515	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	745	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGATGTGTTATTTGCTG	NA	False	NA	17	True	AATAAA	-13	NA	118943321	118966204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
ENSMUSG00000027324.2_0	chr2	+	3559	3	FSM	ENSMUSG00000027324.2	ENSMUST00000028796.2	2706	3	51	-904	51	904	multi-exon	FALSE	canonical	3	106	junction_2	2.5	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGACTATAAGCAAACAAACA	3306	False	NA	NA	False	AATAAA	-5	NA	118865321	118871154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118865950_118867398_118867696_118868520
ENSMUSG00000027324.2_5	chr2	+	1832	1	Genic_Genomic	ENSMUSG00000027324.2	novel	NA	NA	NA	NA	4070	922	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACAACCATCCATTGCAA	7325	False	NA	NA	False	AATAAA	-23	NA	118869340	118871172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_118869300_118871200
ENSMUSG00000027326.14_0	chr2	+	7396	24	NIC	ENSMUSG00000027326.14	novel	7800	23	NA	NA	4	569	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	11.4505594583524	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAAGTTGTGCTCTTCTC	7246	False	NA	7	True	TATAAA	-19	NA	118877634	118935171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603_118903101_118906712_118906852_118907416_118907485_118908378_118908478_118911990_118912107_118917040_118917132_118917956_118918074_118919279_118919368_118924486_118924565_118924746_118924787_118925608_118925711_118927898_118928000_118930242_118930312_118931193_118931304_118932462_118932582_118932979_118933103_118934458
ENSMUSG00000027326.14_17	chr2	+	3851	17	ISM	ENSMUSG00000027326.14	ENSMUST00000028802.3	7800	23	13663	809	13663	571	3prime_fragment	FALSE	canonical	3	50	junction_5	10.2528578333068	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGTTGTGCTCTTCTCTT	32	False	NA	9	True	TATAAA	-21	NA	118901424	118935173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_118903101_118906712_118906852_118907416_118907485_118908378_118908478_118911990_118912107_118917040_118917132_118917956_118918074_118919279_118919368_118924486_118924565_118924746_118924787_118925608_118925711_118927898_118928000_118930242_118930312_118931193_118931304_118932462_118932582_118932979_118933103_118934458
ENSMUSG00000027326.14_4	chr2	+	7057	24	NIC	ENSMUSG00000027326.14	novel	7800	23	NA	NA	3	563	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	14.2823274408149	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTCTAAAGTTGTGCT	7245	False	NA	1	True	TATAAA	-13	NA	118877633	118935165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_118877708_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603_118903101_118906712_118906852_118907416_118907485_118908378_118908478_118911990_118912107_118917040_118917132_118917956_118918074_118919279_118919368_118924486_118924565_118924746_118924787_118925608_118925711_118927898_118928000_118930242_118930312_118931193_118931304_118932462_118932582_118932979_118933103_118934458
ENSMUSG00000027326.14_7	chr2	+	7063	24	FSM	ENSMUSG00000027326.14	ENSMUST00000099542.9	6525	24	34	-572	3	572	multi-exon	FALSE	canonical	3	17	junction_1	14.4274470622304	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTGTGCTCTTCTCTTA	7245	False	NA	10	True	TATAAA	-22	NA	118877633	118935174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118877705_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603_118903101_118906712_118906852_118907416_118907485_118908378_118908478_118911990_118912107_118917040_118917132_118917956_118918074_118919279_118919368_118924486_118924565_118924746_118924787_118925608_118925711_118927898_118928000_118930242_118930312_118931193_118931304_118932462_118932582_118932979_118933103_118934458
ENSMUSG00000027327.17_0	chr2	-	1281	6	FSM	ENSMUSG00000027327.17	ENSMUST00000103188.10	1241	6	-34	-6	-12	5	multi-exon	FALSE	canonical	3	656	junction_1	33.1336686770421	511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTTAGCGGGGGTTTT	NA	False	NA	-9	True	AATAAA	-20	NA	131001974	130988238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995513_130995631_131001872
ENSMUSG00000027329.10_1	chr2	-	1508	7	FSM	ENSMUSG00000027329.10	ENSMUST00000110218.9	2600	7	370	722	-178	573	multi-exon	TRUE	canonical	0	0	junction_5	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCCTGTGCCTGCCTTCT	8402	False	NA	NA	False	ATTAAA	-17	NA	131016751	131012957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_131013711_131013821_131013946_131014123_131014179_131014289_131014330_131014542_131014700_131015115_131015228_131016484
ENSMUSG00000027330.17_0	chr2	+	3077	16	FSM	ENSMUSG00000027330.17	ENSMUST00000028804.15	3089	16	10	2	1	-2	multi-exon	FALSE	canonical	3	45	junction_7	16.6951756171922	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAATCTGTTTGTTATG	NA	False	NA	NA	False	AATAAA	-14	NA	131028878	131040413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033642_131033732_131033856_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
ENSMUSG00000027330.17_1	chr2	+	3001	15	FSM	ENSMUSG00000027330.17	ENSMUST00000079857.9	3004	15	1	2	1	0	multi-exon	FALSE	canonical	3	36	junction_6	17.0899481137484	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATCTGTTTGTTATGCA	NA	False	NA	NA	False	AATAAA	-16	NA	131028878	131040415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033687_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
ENSMUSG00000027330.17_11	chr2	+	2215	10	ISM	ENSMUSG00000027330.17	ENSMUST00000079857.9	3004	15	4749	2	-36	0	3prime_fragment	FALSE	canonical	3	36	junction_1	15.1143787316728	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATCTGTTTGTTATGCA	NA	False	NA	NA	False	AATAAA	-16	NA	131033626	131040415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_131033687_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
ENSMUSG00000027331.16_0	chr2	+	1343	9	FSM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	207	3052	-22	2	multi-exon	FALSE	canonical	3	391	junction_3	12.8038080273019	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATATTCTGACTAACACTA	NA	False	NA	23	True	AATAAA	-16	NA	118644690	118665125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
ENSMUSG00000027331.16_1	chr2	+	1398	8	FSM	ENSMUSG00000027331.16	ENSMUST00000110842.8	925	8	-23	-450	-22	-34	multi-exon	FALSE	canonical	3	391	junction_2	12.6813377263841	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTAGAGCTTTGGAAATAA	NA	False	NA	-13	True	AATAAA	-42	NA	118644690	118665089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
ENSMUSG00000027331.16_18	chr2	+	1866	1	ISM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	20423	1405	351	-852	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCAGCATCCCTCTCTCT	1164	False	NA	NA	False	TATAAA	-5	NA	118664906	118666772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_118664900_118666800
ENSMUSG00000027331.16_2	chr2	+	1334	9	NNC	ENSMUSG00000027331.16	novel	4602	9	NA	NA	-22	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	137.948303269739	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATATTAATATTCTGAC	NA	False	NA	15	True	AATAAA	-8	NA	118644690	118665117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_118644790_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
ENSMUSG00000027332.12_0	chr2	+	2063	12	FSM	ENSMUSG00000027332.12	ENSMUST00000028807.6	3665	12	42	1560	-32	334	multi-exon	FALSE	canonical	3	194	junction_8	15.0382432594562	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTTCTGCGCCCAAAG	NA	False	NA	42	True	ATTAAA	-14	NA	118692476	118711830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708141_118708247_118708355_118708429_118710933
ENSMUSG00000027332.12_1	chr2	+	1966	11	NIC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	-32	342	combination_of_known_splicesites	FALSE	canonical	3	32	junction_9	56.9639359595174	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGCCCAAAGCCGTGTTC	NA	False	NA	50	True	ATTAAA	-22	NA	118692476	118711838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708355_118708429_118710933
ENSMUSG00000027332.12_27	chr2	+	2131	1	ISM	ENSMUSG00000027332.12	ENSMUST00000028807.6	3665	12	18799	26	4320	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAGACAAAATAAAA	1358	False	NA	NA	False	AAGAAA	-8	NA	118711233	118713364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_118711200_118713400
ENSMUSG00000027333.19_0	chr2	+	2128	7	FSM	ENSMUSG00000027333.19	ENSMUST00000028806.12	2270	7	126	16	-33	0	multi-exon	FALSE	canonical	3	113	junction_6	10.8269211792745	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCTCCTTTGCTTCTCTC	NA	False	NA	15	True	AATAAA	-16	NA	131333809	131367087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366662
ENSMUSG00000027333.19_2	chr2	+	2218	8	FSM	ENSMUSG00000027333.19	ENSMUST00000110186.9	2170	8	-53	5	-33	0	multi-exon	FALSE	canonical	3	32	junction_6	48.183746942177	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCTCCTTTGCTTCTCTC	NA	False	NA	15	True	AATAAA	-16	NA	131333809	131367087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366163_131366254_131366662
ENSMUSG00000027333.19_8	chr2	+	1369	6	FSM	ENSMUSG00000027333.19	ENSMUST00000110179.9	1320	6	-56	7	-36	-2	multi-exon	FALSE	canonical	3	15	junction_4	49.3128786423993	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACGCTCCTTTGCTTCTC	NA	False	NA	13	True	AATAAA	-14	NA	131333806	131367085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131363978_131364140_131366662
ENSMUSG00000027338.17_0	chr2	+	3164	2	FSM	ENSMUSG00000027338.17	ENSMUST00000110172.9	3176	2	0	12	0	-12	multi-exon	FALSE	canonical	3	15	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATACAGACAGCCACGGT	NA	False	NA	NA	False	NA	NA	NA	131792781	131798038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131792836_131794928
ENSMUSG00000027338.17_1	chr2	+	1933	3	FSM	ENSMUSG00000027338.17	ENSMUST00000110171.9	1938	3	0	5	0	-5	multi-exon	FALSE	canonical	2	3	junction_2	6	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAGCCACGGTGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	131792781	131798045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131792836_131794928_131795503_131796740
ENSMUSG00000027338.17_3	chr2	+	1956	3	FSM	ENSMUSG00000027338.17	ENSMUST00000110170.8	1969	3	1	12	0	-12	multi-exon	FALSE	canonical	1	1	junction_2	7	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATACAGACAGCCACGGT	NA	False	NA	NA	False	NA	NA	NA	131792781	131798038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131792836_131794928_131795503_131796710
ENSMUSG00000027338.17_6	chr2	+	3166	2	ISM	ENSMUSG00000027338.17	ENSMUST00000110169.2	1918	3	-22	12	-22	-12	intron_retention	FALSE	canonical	1	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATACAGACAGCCACGGT	NA	False	NA	NA	False	NA	NA	NA	131792934	131798038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_131792991_131794928
ENSMUSG00000027339.16_1	chr2	-	4672	11	FSM	ENSMUSG00000027339.16	ENSMUST00000028814.15	8233	11	120	3441	120	-4	multi-exon	FALSE	canonical	1	8	junction_10	8.85494212290515	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGAGCCCCTGTGGATCT	NA	False	NA	-4	True	AATAAA	-11	NA	131871801	131834775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_131838374_131840164_131840263_131842352_131842475_131843605_131843658_131844801_131844904_131846218_131846380_131847227_131847317_131849285_131849438_131851605_131851682_131854481_131854573_131871670
ENSMUSG00000027339.16_2	chr2	-	4722	11	NIC	ENSMUSG00000027339.16	novel	8233	11	NA	NA	129	-4	combination_of_known_junctions	FALSE	canonical	1	3	junction_10	10.2156742312977	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGAGCCCCTGTGGATCT	NA	False	NA	-4	True	AATAAA	-11	NA	131871792	131834775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_131838374_131840164_131840263_131842352_131842475_131843605_131843658_131844801_131844904_131846218_131846380_131847227_131847317_131849285_131849438_131851605_131851682_131854481_131854573_131871611
ENSMUSG00000027339.16_4	chr2	-	1892	1	ISM	ENSMUSG00000027339.16	ENSMUST00000028814.15	8233	11	35254	3441	26426	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGAGCCCCTGTGGATCT	NA	False	NA	-4	True	AATAAA	-11	NA	131836667	131834775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_131834800_131836700
ENSMUSG00000027340.16_0	chr2	-	6350	16	FSM	ENSMUSG00000027340.16	ENSMUST00000028815.15	6364	16	11	3	11	-3	multi-exon	FALSE	canonical	3	134	junction_8	16.3644601363918	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGTTCTGTTGTCATTTGC	7610	False	NA	-4	True	AATAAA	-14	NA	131987017	131894418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_131898822_131900119_131900216_131902582_131902721_131903978_131904109_131907283_131907390_131908637_131908786_131913230_131913388_131913836_131913958_131917418_131917601_131919348_131919414_131920332_131920422_131931015_131931174_131933132_131933250_131936061_131936161_131943391_131943647_131986931
ENSMUSG00000027340.16_2	chr2	-	3057	1	ISM	ENSMUSG00000027340.16	ENSMUST00000028815.15	6364	16	89553	3	1130	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGTTCTGTTGTCATTTGC	NA	False	NA	-4	True	AATAAA	-14	NA	131897475	131894418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_131894400_131897500
ENSMUSG00000027340.16_5	chr2	-	6262	15	NIC	ENSMUSG00000027340.16	novel	6364	16	NA	NA	8	-5	intron_retention	FALSE	canonical	3	13	junction_10	41.8786512267459	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAGTTCTGTTGTCATTT	7607	False	NA	-6	True	AATAAA	-12	NA	131987020	131894420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_131898822_131900119_131900216_131902582_131902721_131903978_131904109_131907283_131907390_131908637_131908786_131913230_131913388_131913836_131913958_131917418_131917601_131919348_131919414_131931015_131931174_131933132_131933250_131936061_131936161_131943391_131943647_131986931
ENSMUSG00000027341.11_0	chr2	-	1559	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	51	2	0	0	multi-exon	FALSE	canonical	3	556	junction_2	26.7332502076846	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGTGTTGTTATTG	4921	False	NA	-4	True	TATAAA	-18	NA	132089676	132081413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
ENSMUSG00000027341.11_10	chr2	-	3053	3	FSM	ENSMUSG00000027341.11	ENSMUST00000110164.8	2957	3	-99	3	3	-1	multi-exon	FALSE	canonical	3	556	junction_2	10	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTGTGTGTTGTTATT	4924	False	NA	-5	True	TATAAA	-17	NA	132089673	132081414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_132082547_132085938_132086062_132087875
ENSMUSG00000027341.11_2	chr2	-	1539	4	FSM	ENSMUSG00000027341.11	ENSMUST00000110163.8	1551	4	10	2	0	0	multi-exon	FALSE	canonical	3	93	junction_3	223.123782287371	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGTGTTGTTATTG	4918	False	NA	-4	True	TATAAA	-18	NA	132089679	132081413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089515
ENSMUSG00000027342.15_0	chr2	-	1254	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	132	132	132	-132	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	1331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTCATAGAGCAGTGCC	8357	False	NA	-11	True	AATAAA	-13	NA	132095102	132091213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
ENSMUSG00000027346.16_0	chr2	-	3617	20	FSM	ENSMUSG00000027346.16	ENSMUST00000060955.12	3686	20	64	5	9	-4	multi-exon	TRUE	canonical	3	65	junction_16	14.3132737727671	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCTTTGGCTTCCTGAT	NA	False	NA	-5	True	NA	NA	NA	132420089	132371006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414175_132419987
ENSMUSG00000027346.16_17	chr2	-	3517	19	FSM	ENSMUSG00000027346.16	ENSMUST00000149854.8	3612	19	83	12	-19	-11	multi-exon	FALSE	canonical	3	23	junction_15	20.2402239776804	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCGCCACCACCTTTGGCT	NA	False	NA	-12	True	NA	NA	NA	132420072	132371013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132406546_132406632_132410539_132410637_132414104_132414175_132419987
ENSMUSG00000027346.16_2	chr2	-	3637	20	FSM	ENSMUSG00000027346.16	ENSMUST00000110142.8	3703	20	62	4	1	-4	multi-exon	FALSE	canonical	3	30	junction_19	19.1733598654971	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCTTTGGCTTCCTGAT	NA	False	NA	-5	True	NA	NA	NA	132420106	132371006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414178_132419987
ENSMUSG00000027346.16_24	chr2	-	3295	19	ISM	ENSMUSG00000027346.16	ENSMUST00000060955.12	3686	20	78	3644	-22	0	5prime_fragment	FALSE	canonical	3	65	junction_15	14.6118504248951	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTTTGTCTGGTCTAGT	NA	False	NA	NA	False	AATAAA	-13	NA	132420075	132374645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414175_132419987
ENSMUSG00000027346.16_25	chr2	-	3291	19	ISM	ENSMUSG00000027346.16	ENSMUST00000110142.8	3703	20	100	3643	-15	0	5prime_fragment	FALSE	canonical	3	30	junction_18	19.5632087297168	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTTTGTCTGGTCTAGT	NA	False	NA	NA	False	AATAAA	-13	NA	132420068	132374645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414178_132419987
ENSMUSG00000027347.19_0	chr2	-	5089	17	FSM	ENSMUSG00000027347.19	ENSMUST00000178884.8	5104	17	15	0	15	0	multi-exon	FALSE	non_canonical	0	0	junction_14	14.2390308658981	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTCAAAGTCGTGTGC	NA	False	NA	-8	True	CATAAA	-15	NA	117173343	117110474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_117113158_117115333_117115714_117116552_117116706_117117322_117117360_117118304_117118450_117119097_117119208_117119825_117119931_117120796_117120878_117122146_117122423_117124234_117124352_117125189_117125364_117128942_117129097_117130923_117131056_117132441_117132503_117136256_117136365_117168756_117168942_117173155
ENSMUSG00000027347.19_1	chr2	-	4988	16	ISM	ENSMUSG00000027347.19	ENSMUST00000178884.8	5104	17	4330	0	4162	0	3prime_fragment	FALSE	non_canonical	0	0	junction_14	12.4250642743699	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTCAAAGTCGTGTGC	NA	False	NA	-8	True	CATAAA	-15	NA	117169028	117110474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_117113158_117115333_117115714_117116552_117116706_117117322_117117360_117118304_117118450_117119097_117119208_117119825_117119931_117120796_117120878_117122146_117122423_117124234_117124352_117125189_117125364_117128942_117129097_117130923_117131056_117132441_117132503_117136256_117136365_117168756
ENSMUSG00000027347.19_17	chr2	-	4790	16	NNC	ENSMUSG00000027347.19	novel	5104	17	NA	NA	4153	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	15.2606975230128	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAACTTCAAAGTCGTGTG	NA	False	NA	-9	True	CATAAA	-14	NA	117169037	117110475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_117113158_117115333_117115714_117116552_117116706_117117322_117117360_117118304_117118450_117119097_117119208_117119825_117119931_117120796_117120878_117122146_117122423_117124234_117124352_117125189_117125364_117128942_117129097_117130923_117131056_117132441_117132503_117136256_117136365_117168962
ENSMUSG00000027347.19_2	chr2	-	4016	10	ISM	ENSMUSG00000027347.19	ENSMUST00000178884.8	5104	17	49084	-6	48916	5	3prime_fragment	FALSE	canonical	3	27	junction_6	5.90668171555645	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAAGTCGTGTGCTTCTTC	NA	False	NA	-2	True	CATAAA	-21	NA	117124274	117110468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_117113158_117115333_117115714_117116552_117116706_117117322_117117360_117118304_117118450_117119097_117119208_117119825_117119931_117120796_117120878_117122146_117122423_117124234
ENSMUSG00000027347.19_5	chr2	-	3813	9	ISM	ENSMUSG00000027347.19	ENSMUST00000178884.8	5104	17	51093	0	50925	0	3prime_fragment	FALSE	canonical	3	27	junction_6	5.84700778176325	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTCAAAGTCGTGTGC	616	False	NA	-8	True	CATAAA	-15	NA	117122265	117110474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_117113158_117115333_117115714_117116552_117116706_117117322_117117360_117118304_117118450_117119097_117119208_117119825_117119931_117120796_117120878_117122146
ENSMUSG00000027347.19_6	chr2	-	1803	1	ISM	ENSMUSG00000027347.19	ENSMUST00000102534.11	5229	17	61205	1	60913	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTCAAAGTCGTGTGC	NA	False	NA	-8	True	CATAAA	-15	NA	117112277	117110474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_117110500_117112300
ENSMUSG00000027349.6_1	chr2	+	561	1	ISM	ENSMUSG00000027349.6	ENSMUST00000028825.5	1861	8	21240	1	12197	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCACTGTGTCATGGCTT	NA	False	NA	43	True	ATTAAA	-21	NA	117101459	117102020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_117101500_117102000
ENSMUSG00000027351.15_0	chr2	+	4298	7	FSM	ENSMUSG00000027351.15	ENSMUST00000028829.13	6016	7	-286	2004	-286	-2004	multi-exon	FALSE	canonical	3	100	junction_4	10.1557318243881	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGAAATTGTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-8	NA	116951568	117010756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_116952238_116983472_116983648_116993978_116994148_116995426_116995477_117002408_117002568_117005824_117005927_117007782
ENSMUSG00000027351.15_11	chr2	+	6211	6	NIC	ENSMUSG00000027351.15	novel	6016	7	NA	NA	-313	-16	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	46.3404790652837	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTGAAATTTAAAAGGGC	NA	False	NA	0	True	ATTAAA	-5	NA	116951541	117012744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_116952238_116983472_116983648_116993978_116994148_116995426_116995477_117002408_117002568_117007782
ENSMUSG00000027351.15_6	chr2	+	3344	1	ISM	ENSMUSG00000027351.15	ENSMUST00000028829.13	6016	7	57552	10	57288	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTAAAAGGGCTTTTCT	NA	False	NA	6	True	ATTAAA	-11	NA	117009406	117012750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_117009400_117012800
ENSMUSG00000027353.15_0	chr2	+	2956	19	FSM	ENSMUSG00000027353.15	ENSMUST00000028831.15	3179	19	28	195	28	-195	multi-exon	FALSE	canonical	3	131	junction_1	21.8867032185704	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGAGTAAGAAGAGTAAA	NA	False	NA	29	True	AATAAA	-21	NA	132658088	132685620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_132658386_132658993_132659166_132659624_132659709_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
ENSMUSG00000027353.15_5	chr2	+	4780	18	NIC	ENSMUSG00000027353.15	novel	3179	19	NA	NA	18	-195	intron_retention	FALSE	canonical	3	131	junction_1	21.5536668256985	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGAGTAAGAAGAGTAAA	NA	False	NA	29	True	AATAAA	-21	NA	132658078	132685620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_132658386_132658993_132659166_132659624_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
ENSMUSG00000027356.9_0	chr2	-	4618	15	FSM	ENSMUSG00000027356.9	ENSMUST00000038280.5	4915	15	508	-211	231	211	multi-exon	FALSE	canonical	0	0	junction_1	0.494871659305393	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGCCTGCTGTCTTGTT	6216	False	NA	NA	False	AATATA	-16	NA	132787318	132746097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_132748762_132753097_132753240_132757110_132757236_132757820_132758043_132759383_132759491_132760425_132760551_132764716_132764767_132766876_132767009_132767606_132767715_132774975_132775079_132776740_132776955_132777935_132778083_132781201_132781436_132783856_132784026_132787242
ENSMUSG00000027357.17_0	chr2	+	1888	7	FSM	ENSMUSG00000027357.17	ENSMUST00000028835.13	1924	7	11	25	1	-25	multi-exon	FALSE	canonical	3	562	junction_2	81.1632442810305	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTGGAAAAAAATCCATGC	1633	False	NA	-12	True	AATAAA	-3	NA	132688596	132708680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_132689046_132691785_132691924_132696812_132696943_132703128_132703215_132704254_132704324_132706009_132706102_132707756
ENSMUSG00000027357.17_1	chr2	+	1670	5	NIC	ENSMUSG00000027357.17	novel	1772	6	NA	NA	3	-25	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	304.988012059491	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTGGAAAAAAATCCATGC	1635	False	NA	-12	True	AATAAA	-3	NA	132688598	132708680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_132689046_132691785_132691924_132704254_132704324_132706009_132706102_132707756
ENSMUSG00000027357.17_3	chr2	+	1606	4	NIC	ENSMUSG00000027357.17	novel	1772	6	NA	NA	4	-19	combination_of_known_splicesites	FALSE	canonical	3	107	junction_2	299.273564931263	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATCCATGCCTTGCA	1636	False	NA	-6	True	AATAAA	-9	NA	132688599	132708686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_132689046_132691785_132691924_132706009_132706102_132707756
ENSMUSG00000027359.17_1	chr2	+	2295	10	FSM	ENSMUSG00000027359.17	ENSMUST00000061491.14	2918	10	618	5	-565	-5	multi-exon	FALSE	canonical	3	61	junction_5	10.1592261783666	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACATACGAGGCTTCGC	NA	False	NA	11	True	AATAAA	-11	NA	126394944	126430158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_126395553_126403456_126403667_126406597_126406757_126409666_126409792_126416621_126416817_126419779_126419871_126420768_126420968_126422825_126422924_126428171_126428303_126429679
ENSMUSG00000027359.17_3	chr2	+	5251	9	NIC	ENSMUSG00000027359.17	novel	2918	10	NA	NA	-561	-8	intron_retention	FALSE	canonical	3	64	junction_1	9.58840445538255	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACTAACATACGAGGCTT	NA	False	NA	8	True	AATAAA	-8	NA	126394948	126430155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_126395553_126403456_126403667_126406597_126406757_126409666_126409792_126416621_126419871_126420768_126420968_126422825_126422924_126428171_126428303_126429679
ENSMUSG00000027359.17_5	chr2	+	2070	5	ISM	ENSMUSG00000027359.17	ENSMUST00000141482.3	1478	10	20657	-297	12025	-8	3prime_fragment	FALSE	canonical	3	66	junction_2	10.2316909648406	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACTAACATACGAGGCTT	NA	False	NA	8	True	AATAAA	-8	NA	126418704	126430155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_126419871_126420768_126420968_126422825_126422924_126428171_126428303_126429679
ENSMUSG00000027361.16_0	chr2	-	2616	9	FSM	ENSMUSG00000027361.16	ENSMUST00000110425.9	4153	9	62	1475	-4	-2	multi-exon	FALSE	canonical	3	222	junction_1	62.4468524026632	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAGCTCCATGCAGACTC	NA	False	NA	-14	True	ATTAAA	-10	NA	126517426	126470836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_126472303_126481148_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ENSMUSG00000027361.16_32	chr2	-	1352	8	FSM	ENSMUSG00000027361.16	ENSMUST00000103226.10	1338	8	-14	0	2	0	multi-exon	FALSE	canonical	3	353	junction_7	27.2074419591255	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTGAATGAGTGCAGA	NA	False	NA	-17	True	NA	NA	NA	126517420	126480940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ENSMUSG00000027361.16_4	chr2	-	2607	9	FSM	ENSMUSG00000027361.16	ENSMUST00000110424.9	2613	9	2	4	2	-2	multi-exon	FALSE	canonical	3	55	junction_3	121.804595048791	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAGCTCCATGCAGACTC	NA	False	NA	-14	True	ATTAAA	-10	NA	126517420	126470836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ENSMUSG00000027361.16_6	chr2	-	2751	10	NIC	ENSMUSG00000027361.16	novel	2751	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	154.912480269376	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCTCCATGCAGACTCAT	NA	False	NA	-12	True	ATTAAA	-12	NA	126517461	126470834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_126472303_126481148_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126504910_126505009_126517275
ENSMUSG00000027363.16_0	chr2	+	4113	19	FSM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	23	9	6	-2	multi-exon	TRUE	canonical	3	323	junction_9	42.2163738639668	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAATCATTTGAAAC	3599	False	NA	-3	True	ATTAAA	-11	NA	126549285	126601208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
ENSMUSG00000027363.16_9	chr2	+	3962	18	NIC	ENSMUSG00000027363.16	novel	4145	19	NA	NA	11	-3	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	96.2776406183958	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAATCATTTGAAA	3604	False	NA	-4	True	ATTAAA	-10	NA	126549290	126601207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_126549408_126559914_126560085_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
ENSMUSG00000027364.15_0	chr2	-	288	1	FSM	ENSMUSG00000074846.4	ENSMUST00000188689.2	204	1	82	-166	82	166	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1871	False	NA	NA	False	AGTAAA	-19	NA	126551395	126551107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_126551100_126551400
ENSMUSG00000027364.15_2	chr2	-	1042	6	ISM	ENSMUSG00000027364.15	ENSMUST00000028842.9	1361	7	2967	1	2961	0	3prime_fragment	FALSE	canonical	2	5	junction_2	2.41660919471891	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTACGTCTCACAGACAGC	NA	False	NA	NA	False	ATTAAA	-13	NA	126622397	126603341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_126603612_126611790_126611924_126617643_126617787_126619818_126620029_126621850_126622047_126622307
ENSMUSG00000027364.15_5	chr2	-	1926	4	ISM	ENSMUSG00000027364.15	ENSMUST00000028842.9	1361	7	2955	13028	2949	3240	internal_fragment	FALSE	canonical	3	6	junction_1	2.49443825784929	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGATGACTTAACTCAGT	NA	False	NA	NA	False	NA	NA	NA	126622409	126616368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_126617787_126619818_126620029_126621850_126622047_126622307
ENSMUSG00000027365.15_1	chr2	-	7089	39	FSM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	15	3	15	-3	multi-exon	FALSE	canonical	3	201	junction_33	52.8048791605273	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGATGTTTAATGAGTTTA	NA	False	NA	-19	True	ATTAAA	-32	NA	126718135	126633487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647008_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
ENSMUSG00000027365.15_11	chr2	-	3184	14	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	62882	1	4318	-1	3prime_fragment	FALSE	canonical	3	274	junction_11	35.7630267572564	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTAATGAGTTTACT	NA	False	NA	-17	True	ATTAAA	-34	NA	126655268	126633485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647008_126649208_126649300_126652082_126652151_126654615
ENSMUSG00000027365.15_2	chr2	-	7095	39	FSM	ENSMUSG00000027365.15	ENSMUST00000028843.12	6985	39	-107	-3	6	-3	multi-exon	FALSE	canonical	3	69	junction_11	63.1605262609672	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGATGTTTAATGAGTTTA	NA	False	NA	-19	True	ATTAAA	-32	NA	126718144	126633487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647005_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
ENSMUSG00000027366.13_1	chr2	-	1061	1	ISM	ENSMUSG00000027366.13	ENSMUST00000028844.11	5616	15	40575	1209	27685	-1209	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTGTGGCTTATCAAATA	NA	False	NA	NA	False	AATAAA	-21	NA	126734580	126733519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_126733500_126734600
ENSMUSG00000027366.13_2	chr2	-	2618	16	NIC	ENSMUSG00000027366.13	novel	5616	15	NA	NA	201	1022	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	7.10742960257473	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGTTTTTTTCTGAT	8480	False	NA	NA	False	ATTAAA	-16	NA	126774954	126735161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755219_126755274_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
ENSMUSG00000027366.13_5	chr2	-	2566	15	FSM	ENSMUSG00000027366.13	ENSMUST00000028844.11	5616	15	201	2849	201	1024	multi-exon	FALSE	canonical	3	8	junction_4	6.77630927178938	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGTTTTTTTCTGATCT	8480	False	NA	NA	False	ATTAAA	-18	NA	126774954	126735159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
ENSMUSG00000027367.17_1	chr2	+	3110	8	FSM	ENSMUSG00000027367.17	ENSMUST00000110375.9	3116	8	6	0	6	0	multi-exon	FALSE	canonical	3	326	junction_5	27.592515992122	863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAGAGTGTTCATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	127112154	127140852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_127112801_127126014_127126224_127126451_127126502_127132691_127132803_127132877_127132961_127134070_127134171_127137403_127137489_127139026
ENSMUSG00000027367.17_27	chr2	+	1275	1	ISM	ENSMUSG00000027367.17	ENSMUST00000110375.9	3116	8	27429	0	5547	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAGAGTGTTCATTTCT	4494	False	NA	9	True	AATAAA	-16	NA	127139577	127140852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_127139600_127140900
ENSMUSG00000027368.7_0	chr2	+	1686	4	FSM	ENSMUSG00000027368.7	ENSMUST00000028846.7	1617	4	-82	13	-82	-13	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAGCAGTACCACAT	NA	False	NA	NA	False	AATAAA	-16	NA	127177996	127180283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_127178558_127178696_127178819_127179168_127179389_127179500
ENSMUSG00000027371.11_1	chr2	-	1215	8	FSM	ENSMUSG00000027371.11	ENSMUST00000028848.4	1211	8	-5	1	2	0	multi-exon	FALSE	canonical	3	84	junction_6	10.321366781822	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAGCTTCCACTGTCTT	NA	False	NA	-5	True	AATAAA	-18	NA	127286475	127278135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127278327_127278465_127278554_127278656_127278766_127280032_127280193_127280429_127280490_127282305_127282523_127283793_127284045_127286336
ENSMUSG00000027371.11_11	chr2	-	2765	5	NIC	ENSMUSG00000027371.11	novel	1462	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	3	junction_3	42.6204176422522	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAGCTTCCACTGTCTT	NA	False	NA	-5	True	AATAAA	-18	NA	127286486	127278135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_127278554_127278656_127280490_127282305_127282419_127283793_127284045_127286336
ENSMUSG00000027371.11_2	chr2	-	1021	7	NIC	ENSMUSG00000027371.11	novel	1462	7	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	35.4044096437467	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAGCTTCCACTGTCTT	NA	False	NA	-5	True	AATAAA	-18	NA	127286441	127278135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_127278327_127278465_127278554_127278656_127278766_127280429_127280490_127282305_127282523_127283793_127284045_127286336
ENSMUSG00000027371.11_3	chr2	-	2609	6	NIC	ENSMUSG00000027371.11	novel	1462	7	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	3	junction_4	40.7499693251418	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTTTAGCTTCCACTGTC	NA	False	NA	-7	True	AATAAA	-16	NA	127286471	127278137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_127278327_127278465_127278554_127278656_127280490_127282305_127282419_127283793_127284045_127286336
ENSMUSG00000027371.11_4	chr2	-	336	3	ISM	ENSMUSG00000027371.11	ENSMUST00000123327.2	540	4	1526	-55	1526	0	3prime_fragment	FALSE	canonical	3	106	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAGCTTCCACTGTCTT	NA	False	NA	-5	True	AATAAA	-18	NA	127278713	127278135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_127278327_127278465_127278554_127278656
ENSMUSG00000027371.11_7	chr2	-	2719	6	NIC	ENSMUSG00000027371.11	novel	1462	7	NA	NA	1	-1	intron_retention	FALSE	canonical	3	84	junction_4	10.5754432531218	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTAGCTTCCACTGTCT	NA	False	NA	-6	True	AATAAA	-17	NA	127286476	127278136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_127278327_127278465_127278554_127278656_127280490_127282305_127282523_127283793_127284045_127286336
ENSMUSG00000027371.11_8	chr2	-	2838	5	NIC	ENSMUSG00000027371.11	novel	1462	7	NA	NA	15	0	intron_retention	FALSE	canonical	3	84	junction_3	9.49670995661129	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAGCTTCCACTGTCTT	NA	False	NA	-5	True	AATAAA	-18	NA	127286455	127278135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_127278554_127278656_127280490_127282305_127282523_127283793_127284045_127286336
ENSMUSG00000027371.11_9	chr2	-	1445	7	FSM	ENSMUSG00000027371.11	ENSMUST00000146757.8	1462	7	11	6	3	-6	multi-exon	FALSE	canonical	3	84	junction_5	9.94428926011753	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGCAGTTTAGCTTCCAC	NA	False	NA	-11	True	AATAAA	-12	NA	127286474	127278141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127278327_127278465_127278554_127278656_127278766_127280032_127280490_127282305_127282523_127283793_127284045_127286336
ENSMUSG00000027374.13_0	chr2	+	1443	12	FSM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	190	2848	-7	126	multi-exon	FALSE	canonical	3	1110	junction_4	149.07045314213	1130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAGCACATGGTATATAG	4157	False	NA	22	True	AATAAA	-19	NA	127429331	127445901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ENSMUSG00000027375.15_0	chr2	-	2307	4	FSM	ENSMUSG00000027375.15	ENSMUST00000028854.15	2778	4	465	6	-11	-6	multi-exon	FALSE	canonical	3	105	junction_3	8.83176086632785	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAATCTTTGTCTCACTC	NA	False	NA	-8	True	ATTAAA	-11	NA	127498150	127475151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127476975_127480508_127480635_127482140_127482309_127497960
ENSMUSG00000027375.15_1	chr2	-	1453	1	ISM	ENSMUSG00000027375.15	ENSMUST00000028854.15	2778	4	22011	6	21535	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAATCTTTGTCTCACTC	5955	False	NA	-8	True	ATTAAA	-11	NA	127476604	127475151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_127475200_127476600
ENSMUSG00000027377.3_0	chr2	-	1967	4	FSM	ENSMUSG00000027377.3	ENSMUST00000028856.3	2006	4	31	8	31	-8	multi-exon	FALSE	canonical	3	53	junction_2	4.54606056566195	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGGAAGTGTGGAGTCTA	NA	False	NA	-6	True	AATAAA	-13	NA	127571821	127546313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127547844_127550756_127550880_127554188_127554357_127571675
ENSMUSG00000027377.3_1	chr2	-	2186	5	NNC	ENSMUSG00000027377.3	novel	2006	4	NA	NA	-811	-4	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	23.2849200127464	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTGTGGAGTCTATCGC	NA	False	NA	-2	True	AATAAA	-17	NA	127572663	127546309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_127547844_127550756_127550880_127554188_127554357_127571675_127571900_127572526
ENSMUSG00000027377.3_4	chr2	-	820	2	ISM	ENSMUSG00000027377.3	ENSMUST00000028856.3	2006	4	20989	825	20989	-825	3prime_fragment	FALSE	canonical	3	64	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCAGCTGCTGGGTTTGG	NA	False	NA	NA	False	AATAAA	-11	NA	127550863	127547130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_127547844_127550756
ENSMUSG00000027377.3_6	chr2	-	1356	1	ISM	ENSMUSG00000027377.3	ENSMUST00000028856.3	2006	4	24181	10	24181	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGGGAAGTGTGGAGTC	NA	False	NA	-8	True	AATAAA	-11	NA	127547671	127546315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_127546300_127547700
ENSMUSG00000027378.17_0	chr2	-	2268	20	NNC	ENSMUSG00000027378.17	novel	2296	20	NA	NA	-15	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_12	19.8002490261068	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTGTTATATCTAAATT	2819	False	NA	0	True	AATAAA	-16	NA	127630789	127582655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608042_127610090_127610176_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
ENSMUSG00000027378.17_1	chr2	-	2266	20	FSM	ENSMUSG00000027378.17	ENSMUST00000028857.14	2260	20	-16	10	-16	-6	multi-exon	FALSE	canonical	3	19	junction_11	16.3928570350886	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGGAACATTGTTATATC	2818	False	NA	-6	True	AATAAA	-10	NA	127630790	127582661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608042_127610090_127610179_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
ENSMUSG00000027378.17_2	chr2	-	2267	20	NNC	ENSMUSG00000027378.17	novel	2296	20	NA	NA	20	-6	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_12	17.789940822269	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGGAACATTGTTATATC	2811	False	NA	-6	True	AATAAA	-10	NA	127630797	127582661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608039_127610090_127610176_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
ENSMUSG00000027378.17_3	chr2	-	2263	20	FSM	ENSMUSG00000027378.17	ENSMUST00000110357.2	2296	20	27	6	-16	-6	multi-exon	FALSE	canonical	3	41	junction_11	13.7437973922422	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGGAACATTGTTATATC	2818	False	NA	-6	True	AATAAA	-10	NA	127630790	127582661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608039_127610090_127610179_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
ENSMUSG00000027379.14_0	chr2	-	3390	25	FSM	ENSMUSG00000027379.15	ENSMUST00020183811.1	3418	25	18	10	18	-1	multi-exon	TRUE	canonical	0	0	junction_18	145.15221297161	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGTGACCTAGTTGTT	NA	False	NA	-9	True	AATAAA	-14	NA	127673761	127643045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
ENSMUSG00000027379.14_1	chr2	-	3394	25	FSM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	23	1	17	-1	multi-exon	FALSE	canonical	0	0	junction_18	145.15221297161	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGTGACCTAGTTGTT	NA	False	NA	-9	True	AATAAA	-14	NA	127673762	127643045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
ENSMUSG00000027380.11_1	chr2	+	2789	19	NIC	ENSMUSG00000027380.11	novel	531	6	NA	NA	-96	6	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	2.77999911182151	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACAGGCGGAAATGAATT	NA	False	NA	NA	False	AATAAA	-24	NA	127680699	127965799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_127680903_127691112_127691210_127709202_127709287_127713181_127713269_127714029_127714129_127719663_127719779_127720676_127720764_127722345_127722419_127726325_127726459_127753349_127753385_127814451_127814569_127820592_127820747_127851996_127852087_127876732_127876843_127886263_127886376_127917766_127917855_127928278_127928350_127947596_127947699_127964867
ENSMUSG00000027381.17_1	chr2	+	4861	5	FSM	ENSMUSG00000027381.17	ENSMUST00000103210.2	3538	5	-6	-1317	4	-2	multi-exon	FALSE	canonical	3	10	junction_1	9.78199877325692	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAACTGTTCGATGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	127967963	128004465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_127968173_127970539_127970677_127970844_127970935_127989004_127989115_128000150
ENSMUSG00000027381.17_10	chr2	+	2770	1	ISM	ENSMUSG00000027381.17	ENSMUST00000110341.9	5036	4	33738	1	31646	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACTGTTCGATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	128001696	128004466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_128001700_128004500
ENSMUSG00000027381.17_3	chr2	+	5035	4	FSM	ENSMUSG00000027381.17	ENSMUST00000110341.9	5036	4	-1	2	0	-2	multi-exon	FALSE	canonical	3	10	junction_1	11.2644968324772	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAACTGTTCGATGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	127967957	128004465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_127968173_127970539_127970935_127989004_127989115_128000150
ENSMUSG00000027381.17_31	chr2	+	4369	2	ISM	ENSMUSG00000027381.17	ENSMUST00000110341.9	5036	4	21103	1	19011	-1	3prime_fragment	FALSE	canonical	3	31	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACTGTTCGATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	127989061	128004466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_127989115_128000150
ENSMUSG00000027381.17_6	chr2	+	5099	4	NIC	ENSMUSG00000027381.17	novel	974	4	NA	NA	-50	-11	intron_retention	FALSE	canonical	3	31	junction_3	2.16024689946929	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGCTTTCATGAACTGTT	NA	False	NA	NA	False	AATAAA	-8	NA	127969444	128004456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_127969733_127970539_127970935_127989004_127989115_128000150
ENSMUSG00000027381.17_7	chr2	+	3362	5	NIC	ENSMUSG00000027381.17	novel	974	4	NA	NA	-50	6	intron_retention	FALSE	canonical	3	24	junction_2	4.32290411644765	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATTCTTCAAATTTCTT	NA	False	NA	11	True	AATAAA	-20	NA	127969444	128002887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_127969733_127970539_127970677_127970844_127970935_127989004_127989115_128000150
ENSMUSG00000027384.7_0	chr2	+	1075	11	FSM	ENSMUSG00000027384.7	ENSMUST00000044825.5	1166	11	38	53	-26	4	multi-exon	FALSE	canonical	3	226	junction_10	17.7042367810646	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTTTCCCAGAATTTT	NA	False	NA	15	True	AATAAA	-15	NA	140012606	140045556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
ENSMUSG00000027384.7_14	chr2	+	1573	3	ISM	ENSMUSG00000027384.7	ENSMUST00000125913.2	1200	11	30535	-4	30535	4	3prime_fragment	FALSE	canonical	3	226	junction_2	25	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTTTCCCAGAATTTT	NA	False	NA	15	True	AATAAA	-15	NA	140043484	140045556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_140044870_140045207_140045291_140045451
ENSMUSG00000027384.7_7	chr2	+	1042	11	NNC	ENSMUSG00000027384.7	novel	1166	11	NA	NA	-16	3	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_6	69.9549140518377	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATGTTTCCCAGAATTT	NA	False	NA	14	True	AATAAA	-14	NA	140012616	140045555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030656_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
ENSMUSG00000027386.10_0	chr2	+	1578	8	FSM	ENSMUSG00000027386.10	ENSMUST00000028864.3	2905	8	97	1230	97	-1230	multi-exon	FALSE	canonical	0	0	junction_3	1.27775312999988	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATTACTTGTTTTTTG	1138	False	NA	NA	False	GGGGCT	-40	NA	128705948	128737720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_128706068_128719279_128719440_128722175_128722347_128731620_128731747_128734362_128734504_128735686_128735825_128736685_128736825_128737136
ENSMUSG00000027387.12_0	chr2	-	1564	9	FSM	ENSMUSG00000027387.12	ENSMUST00000028866.9	1624	9	58	2	58	-2	multi-exon	FALSE	canonical	2	159	junction_3	33.6115214621415	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGTTTTCATACTTGA	NA	False	NA	-1	True	AATAAA	-20	NA	128785939	128768189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128781762_128781857_128785767
ENSMUSG00000027387.12_3	chr2	-	2370	8	NIC	ENSMUSG00000027387.12	novel	1624	9	NA	NA	87	-2	intron_retention	FALSE	canonical	3	222	junction_7	21.296737318382	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGTTTTCATACTTGA	NA	False	NA	-1	True	AATAAA	-20	NA	128785910	128768189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_128768732_128770806_128770849_128771766_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128781762_128781857_128785767
ENSMUSG00000027387.12_7	chr2	-	1552	9	NNC	ENSMUSG00000027387.12	novel	1624	9	NA	NA	58	-2	at_least_one_novel_splicesite	FALSE	canonical	2	42	junction_6	71.0922595997623	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGTTTTCATACTTGA	NA	False	NA	-1	True	AATAAA	-20	NA	128785939	128768189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777243_128777467_128781762_128781857_128785767
ENSMUSG00000027394.14_1	chr2	+	1977	7	FSM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	37	2553	-6	-2553	multi-exon	FALSE	canonical	3	70	junction_4	11.1118055338555	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAAAACAAAACCAT	NA	False	NA	NA	False	NA	NA	NA	128907898	128935650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_128908224_128910774_128910854_128917775_128918009_128923129_128923266_128923893_128924164_128930913_128931058_128934860
ENSMUSG00000027394.14_10	chr2	+	1979	1	ISM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	28353	10	18250	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTGTCCTTGGGTTTG	NA	False	NA	19	True	ATTAAA	-13	NA	128936214	128938193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_128936200_128938200
ENSMUSG00000027394.14_3	chr2	+	1848	6	ISM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	20	6502	20	0	5prime_fragment	FALSE	canonical	3	70	junction_4	9.64157663455516	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCACTGTTCAGTCCTCC	NA	False	NA	NA	False	ATTAAA	-14	NA	128907881	128931701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_128908224_128910774_128910854_128917775_128918009_128923129_128923266_128923893_128924164_128930913
ENSMUSG00000027394.14_6	chr2	+	1914	6	NIC	ENSMUSG00000027394.14	novel	4567	7	NA	NA	17	-2557	combination_of_known_splicesites	FALSE	canonical	3	3	junction_1	33.4687914332143	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAGAAAAACAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	128907878	128935646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_128908224_128917775_128918009_128923129_128923266_128923893_128924164_128930913_128931058_128934860
ENSMUSG00000027395.16_1	chr2	+	3968	15	FSM	ENSMUSG00000027395.16	ENSMUST00000103205.11	3998	15	25	5	-7	-5	multi-exon	FALSE	canonical	3	224	junction_10	36.5564282853179	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATATGTGTGATTTTT	NA	False	NA	10	True	AATAAA	-11	NA	128942939	128968509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133
ENSMUSG00000027395.16_52	chr2	+	3917	4	NIC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	1435	-5	intron_retention	FALSE	canonical	3	289	junction_2	22.3954360429878	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATATGTGTGATTTTT	NA	False	NA	10	True	AATAAA	-11	NA	128959026	128968509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_128961117_128964989_128965187_128965630_128965885_128967133
ENSMUSG00000027397.15_0	chr2	+	3275	11	FSM	ENSMUSG00000027397.15	ENSMUST00000028880.10	3316	11	33	8	-4	-1	multi-exon	FALSE	canonical	3	202	junction_5	146.125973050652	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAATTTCTCTTGTGCT	NA	False	NA	14	True	AATAAA	-16	NA	129040716	129053528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ENSMUSG00000027397.15_13	chr2	+	2670	10	FSM	ENSMUSG00000027397.15	ENSMUST00000110315.2	3219	10	548	1	548	-1	multi-exon	FALSE	canonical	3	202	junction_4	145.845428069888	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAATTTCTCTTGTGCT	NA	False	NA	14	True	AATAAA	-16	NA	129041777	129053528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ENSMUSG00000027397.15_17	chr2	+	2391	9	ISM	ENSMUSG00000027397.15	ENSMUST00000110315.2	3219	10	945	1	945	-1	3prime_fragment	FALSE	canonical	3	202	junction_3	145.556206927084	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAATTTCTCTTGTGCT	NA	False	NA	14	True	AATAAA	-16	NA	129042174	129053528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ENSMUSG00000027397.15_22	chr2	+	2863	6	ISM	ENSMUSG00000027397.15	ENSMUST00000110315.2	3219	10	6333	1	-677	-1	3prime_fragment	FALSE	canonical	3	303	junction_1	98.2677973702474	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAATTTCTCTTGTGCT	NA	False	NA	14	True	AATAAA	-16	NA	129047562	129053528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ENSMUSG00000027397.15_23	chr2	+	1561	4	ISM	ENSMUSG00000027397.15	ENSMUST00000110315.2	3219	10	8864	-1	814	1	3prime_fragment	FALSE	canonical	3	499	junction_3	37.1573231902766	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATTTCTCTTGTGCTTT	NA	False	NA	16	True	AATAAA	-18	NA	129050093	129053530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129050460_129050960_129051144_129051791_129051877_129052603
ENSMUSG00000027397.15_25	chr2	+	2837	5	ISM	ENSMUSG00000027397.15	ENSMUST00000110315.2	3219	10	7482	1	472	-1	3prime_fragment	FALSE	canonical	3	499	junction_4	37.3965239026303	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAATTTCTCTTGTGCT	NA	False	NA	14	True	AATAAA	-16	NA	129048711	129053528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ENSMUSG00000027397.15_31	chr2	+	752	1	ISM	ENSMUSG00000027397.15	ENSMUST00000028880.10	3316	11	12093	8	3497	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAATTTCTCTTGTGCT	NA	False	NA	14	True	AATAAA	-16	NA	129052776	129053528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129052800_129053500
ENSMUSG00000027397.15_4	chr2	+	5392	11	NIC	ENSMUSG00000027397.15	novel	3316	11	NA	NA	0	-1	intron_retention	FALSE	canonical	3	19	junction_5	173.636430509268	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAATTTCTCTTGTGCT	NA	False	NA	14	True	AATAAA	-16	NA	129040720	129053528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129046165_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ENSMUSG00000027401.10_0	chr2	+	2633	13	FSM	ENSMUSG00000027401.10	ENSMUST00000110299.3	4135	13	-6	1508	-6	-1508	multi-exon	FALSE	canonical	0	0	junction_1	2.16024689946929	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCACCAGTTCCAACCGG	NA	False	NA	NA	False	AATAAA	-21	NA	129854262	129890811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_129854330_129865608_129865783_129866264_129866505_129867177_129867297_129868604_129868734_129871544_129871723_129871820_129871957_129879392_129879497_129880282_129880529_129883676_129883986_129886422_129886581_129889607_129889742_129890172
ENSMUSG00000027404.17_0	chr2	-	1091	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	58	12	-11	-12	multi-exon	TRUE	canonical	3	3295	junction_4	264.518850409989	1744	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATACAGTTGATATATTCA	NA	False	NA	-23	True	AATAAA	-16	NA	130021265	130013566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
ENSMUSG00000027405.17_0	chr2	+	1839	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	22	0	11	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	1591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACACAAAACCAGATAG	NA	False	NA	9	True	GATAAA	-9	NA	130116365	130121211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
ENSMUSG00000027405.17_7	chr2	+	2329	12	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-10	intron_retention	FALSE	canonical	3	433	junction_11	590.287953263994	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACCAGATAGTATGTG	NA	False	NA	15	True	AATAAA	-4	NA	130116365	130121217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332
ENSMUSG00000027406.14_0	chr2	-	1203	12	FSM	ENSMUSG00000027406.14	ENSMUST00000239288.2	1233	12	27	3	0	-3	multi-exon	FALSE	canonical	3	48	junction_1	222.733469301557	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACATACTATCTGGTTTT	NA	False	NA	NA	False	AATAAA	-8	NA	130126354	130121239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130121358_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUSG00000027406.14_1	chr2	-	1486	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	113	17	0	-9	multi-exon	FALSE	canonical	3	745	junction_6	49.1089192551946	668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATACACACATACTATCT	NA	False	NA	NA	False	AATAAA	-2	NA	130126354	130121245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUSG00000027408.8_0	chr2	-	2361	14	FSM	ENSMUSG00000027408.8	ENSMUST00000028897.8	2366	14	2	3	2	-2	multi-exon	FALSE	canonical	3	131	junction_8	18.681383322448	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTCCTCTTGAGTTCCTA	NA	False	NA	-6	True	ATTAAA	-16	NA	130239492	130232697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130233063_130233157_130233261_130234990_130235131_130235303_130235602_130235685_130235866_130235951_130236149_130236229_130236354_130236656_130236746_130236841_130236993_130237555_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
ENSMUSG00000027411.18_1	chr2	+	2721	23	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-10	-4	intron_retention	FALSE	canonical	0	0	junction_14	85.518025261509	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAGTTGTTGTATGCTG	NA	False	NA	17	True	AATAAA	-17	NA	130266274	130285650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
ENSMUSG00000027411.18_2	chr2	+	2632	24	FSM	ENSMUSG00000027411.18	ENSMUST00000028900.11	3161	24	-10	539	-10	-4	multi-exon	FALSE	canonical	0	0	junction_15	83.6383654878219	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAGTTGTTGTATGCTG	NA	False	NA	17	True	AATAAA	-17	NA	130266274	130285650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
ENSMUSG00000027412.13_0	chr2	+	3395	20	FSM	ENSMUSG00000027412.13	ENSMUST00000040872.13	3458	20	57	6	-6	-1	multi-exon	TRUE	canonical	3	25	junction_3	8.54837950981163	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAGGTTGAGAACCACG	NA	False	NA	NA	False	NA	NA	NA	160730084	160747916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_160730138_160733915_160734309_160735913_160736010_160737242_160737494_160737670_160737752_160738669_160738791_160738934_160739287_160740549_160740650_160740788_160740950_160741489_160741584_160741679_160741750_160743577_160743671_160743752_160743797_160744482_160744622_160745522_160745672_160745843_160745931_160746402_160746556_160746719_160746835_160746922_160747027_160747177
ENSMUSG00000027412.13_17	chr2	+	3376	19	ISM	ENSMUSG00000027412.13	ENSMUST00000040872.13	3458	20	3847	13	3784	-8	3prime_fragment	FALSE	canonical	3	25	junction_2	8.64616521005157	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACTTTAAGAAGGTTGAG	1238	False	NA	NA	False	NA	NA	NA	160733874	160747909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_160734309_160735913_160736010_160737242_160737494_160737670_160737752_160738669_160738791_160738934_160739287_160740549_160740650_160740788_160740950_160741489_160741584_160741679_160741750_160743577_160743671_160743752_160743797_160744482_160744622_160745522_160745672_160745843_160745931_160746402_160746556_160746719_160746835_160746922_160747027_160747177
ENSMUSG00000027422.16_10	chr2	-	5115	25	NNC	ENSMUSG00000027422.16	novel	5177	24	NA	NA	31	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_23	88.5776397511747	163	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGGTTCTGTCTGATCT	9789	False	NA	-2	True	ATTAAA	-19	NA	143853152	143789315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_143789850_143790255_143790400_143791189_143791289_143791591_143791676_143792347_143792444_143794111_143794196_143795153_143795250_143795861_143795934_143796035_143796129_143796654_143796745_143796876_143796958_143797033_143797127_143798687_143798781_143799474_143799566_143805023_143805059_143805165_143805336_143806681_143806821_143809359_143809514_143810436_143810556_143811329_143811483_143815388_143815512_143816380_143816530_143830067_143830678_143830707_143832187_143852918
ENSMUSG00000027422.16_3	chr2	-	5147	24	FSM	ENSMUSG00000027422.16	ENSMUST00000016072.12	5177	24	29	1	29	-1	multi-exon	FALSE	canonical	3	227	junction_23	53.514586460919	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGGTTCTGTCTGATCT	9787	False	NA	-2	True	ATTAAA	-19	NA	143853154	143789315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_143789850_143790255_143790400_143791189_143791289_143791591_143791676_143792347_143792444_143794111_143794196_143795153_143795250_143795861_143795934_143796035_143796129_143796654_143796745_143796876_143796958_143797033_143797127_143798687_143798781_143799474_143799566_143805023_143805059_143805165_143805336_143806681_143806821_143809359_143809514_143810436_143810556_143811329_143811483_143815388_143815512_143816380_143816530_143830067_143832187_143852918
ENSMUSG00000027422.16_4	chr2	-	3326	23	ISM	ENSMUSG00000027422.16	ENSMUST00000016072.12	5177	24	22582	1	-5516	-1	3prime_fragment	FALSE	canonical	3	237	junction_15	46.7493757416225	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGGTTCTGTCTGATCT	NA	False	NA	-2	True	ATTAAA	-19	NA	143830601	143789315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_143789850_143790255_143790400_143791189_143791289_143791591_143791676_143792347_143792444_143794111_143794196_143795153_143795250_143795861_143795934_143796035_143796129_143796654_143796745_143796876_143796958_143797033_143797127_143798687_143798781_143799474_143799566_143805023_143805059_143805165_143805336_143806681_143806821_143809359_143809514_143810436_143810556_143811329_143811483_143815388_143815512_143816380_143816530_143830067
ENSMUSG00000027423.16_0	chr2	-	2015	13	FSM	ENSMUSG00000027423.16	ENSMUST00000028909.5	2419	13	-7	411	-7	-411	multi-exon	FALSE	canonical	3	1195	junction_10	117.133352305064	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATATGGAGTGCTTTTGT	NA	False	NA	-22	True	AATAAA	-14	NA	144112499	144092453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296
ENSMUSG00000027423.16_1	chr2	-	1988	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	113	411	-9	-411	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATATGGAGTGCTTTTGT	NA	False	NA	-22	True	AATAAA	-14	NA	144112713	144092453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
ENSMUSG00000027424.12_1	chr2	+	2042	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110028.8	2308	5	259	7	-19	-7	multi-exon	FALSE	canonical	3	74	junction_1	188.862383761299	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGATTCCTAGTCTTTCA	NA	False	NA	7	True	AATAAA	-9	NA	144112841	144122429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_144112935_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ENSMUSG00000027424.12_19	chr2	+	1938	4	ISM	ENSMUSG00000027424.12	ENSMUST00000110027.2	2359	5	970	22	970	-22	3prime_fragment	FALSE	canonical	3	504	junction_2	5.8878405775519	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAGATATTTAACTG	NA	False	NA	-8	True	NA	NA	NA	144113830	144122414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_144114405_144118234_144118452_144120913_144121047_144121400
ENSMUSG00000027424.12_2	chr2	+	1995	5	FSM	ENSMUSG00000027424.12	ENSMUST00000028910.9	2840	5	127	718	86	-7	multi-exon	FALSE	canonical	3	360	junction_1	65.1517459474418	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGATTCCTAGTCTTTCA	NA	False	NA	7	True	AATAAA	-9	NA	144112946	144122429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_144112993_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ENSMUSG00000027424.12_5	chr2	+	2253	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110027.2	2359	5	99	7	99	-7	multi-exon	FALSE	canonical	3	60	junction_1	194.922420465169	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGATTCCTAGTCTTTCA	NA	False	NA	7	True	AATAAA	-9	NA	144112959	144122429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_144113264_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ENSMUSG00000027425.19_1	chr2	+	3272	11	FSM	ENSMUSG00000027425.19	ENSMUST00000147747.8	3299	11	3	24	3	-23	multi-exon	FALSE	canonical	1	81	junction_2	109.46638753517	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCCAGGGCTGCAGCCTA	NA	False	NA	16	True	AATAAA	-22	NA	144210921	144249572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_144211078_144215110_144215290_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
ENSMUSG00000027425.19_2	chr2	+	3757	11	FSM	ENSMUSG00000027425.19	ENSMUST00000028911.15	3801	11	15	29	-1	-28	multi-exon	FALSE	canonical	1	121	junction_10	80.6347319707829	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCACAGCCAGGGCTGCA	NA	False	NA	11	True	AATAAA	-17	NA	144210917	144249567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_144211078_144215110_144215776_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
ENSMUSG00000027425.19_4	chr2	+	914	2	FSM	ENSMUSG00000098387.3	ENSMUST00000183618.3	693	2	6	-227	6	227	multi-exon	FALSE	canonical	3	459	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATCATCATTATTATTA	NA	False	NA	14	True	AATAAA	-15	NA	144210921	144215868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_144211078_144215110
ENSMUSG00000027425.19_70	chr2	+	3232	10	ISM	ENSMUSG00000027425.19	ENSMUST00000028911.15	3801	11	4573	29	-247	-28	3prime_fragment	FALSE	canonical	1	121	junction_9	71.4092707609963	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCACAGCCAGGGCTGCA	NA	False	NA	11	True	AATAAA	-17	NA	144215475	144249567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_144215776_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
ENSMUSG00000027427.14_0	chr2	+	4352	9	FSM	ENSMUSG00000027427.14	ENSMUST00000028914.9	4403	9	41	10	11	-10	multi-exon	FALSE	canonical	3	42	junction_5	6.30352084156148	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATATAACTTTCTGTTT	638	False	NA	-2	True	GATAAA	-14	NA	144369678	144383905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_144369846_144370622_144370741_144374273_144374342_144375077_144375146_144376218_144376332_144377860_144378005_144378202_144378311_144379085_144379278_144380531
ENSMUSG00000027427.14_6	chr2	+	3460	2	ISM	ENSMUSG00000027427.14	ENSMUST00000134051.2	690	3	1103	-3098	1103	-3	3prime_fragment	FALSE	canonical	3	55	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTTCTGTTTCTGGTAT	3842	False	NA	5	True	GATAAA	-21	NA	144379198	144383912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_144379278_144380531
ENSMUSG00000027427.14_7	chr2	+	2271	1	ISM	ENSMUSG00000027427.14	ENSMUST00000028914.9	4403	9	12003	4	3545	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACTTTCTGTTTCTGGTA	6284	False	NA	4	True	GATAAA	-20	NA	144381640	144383911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_144381600_144383900
ENSMUSG00000027427.14_8	chr2	+	3574	4	ISM	ENSMUSG00000027427.14	ENSMUST00000143292.8	835	7	2854	-2220	-727	-981	3prime_fragment	FALSE	canonical	3	55	junction_3	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCTATCAAAAGAAATTGT	1777	False	NA	NA	False	AATAAA	-9	NA	144377133	144382934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_144378005_144378202_144378311_144379085_144379278_144380531
ENSMUSG00000027428.10_0	chr2	-	2111	5	FSM	ENSMUSG00000027428.10	ENSMUST00000028915.6	2170	5	55	4	-24	-4	multi-exon	FALSE	canonical	3	248	junction_1	20.0873094266007	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATCTTCTGACTGCTGTG	NA	False	NA	-13	True	AATAAA	-16	NA	144392734	144384188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_144385930_144386293_144386380_144389913_144390020_144391023_144391067_144392599
ENSMUSG00000027429.17_0	chr2	+	2736	20	NIC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	12	-13	combination_of_known_junctions	FALSE	canonical	3	371	junction_1	64.9806278398403	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATACTAATGCAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	144398187	144432656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_144398245_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ENSMUSG00000027429.17_2	chr2	+	2749	20	FSM	ENSMUSG00000027429.17	ENSMUST00000028916.15	2779	20	17	13	-8	-13	multi-exon	FALSE	canonical	3	154	junction_1	107.06740569791	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATACTAATGCAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	144398192	144432656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_144398263_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ENSMUSG00000027429.17_46	chr2	+	2680	19	ISM	ENSMUSG00000027429.17	ENSMUST00000028916.15	2779	20	2950	13	2872	-13	3prime_fragment	FALSE	canonical	3	530	junction_8	42.0262998197939	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATACTAATGCAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	144401125	144432656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ENSMUSG00000027430.13_0	chr2	+	1215	6	FSM	ENSMUSG00000027430.13	ENSMUST00000028917.7	1350	6	92	43	92	-43	multi-exon	FALSE	canonical	3	290	junction_5	10.373041983912	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATGAACTACTTTATTAT	NA	False	NA	NA	False	AATAAA	-18	NA	144441908	144610635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_144442012_144445707_144445799_144459111_144459348_144477677_144477785_144588820_144588994_144610130
ENSMUSG00000027430.13_2	chr2	+	1127	5	NIC	ENSMUSG00000027430.13	novel	1350	6	NA	NA	91	-41	combination_of_known_splicesites	TRUE	canonical	3	12	junction_1	128.50753868937	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAACTACTTTATTATTA	NA	False	NA	NA	False	AATAAA	-20	NA	144441907	144610637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_144442012_144459111_144459348_144477677_144477785_144588820_144588994_144610130
ENSMUSG00000027433.6_0	chr2	+	3367	30	FSM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	43	24	43	-24	multi-exon	TRUE	canonical	3	956	junction_9	74.1082057489866	2213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAAGCTAAACTTTA	NA	False	NA	-14	True	ATTAAA	-42	NA	146854958	146919896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
ENSMUSG00000027438.15_1	chr2	-	4308	10	FSM	ENSMUSG00000027438.15	ENSMUST00000136513.2	4311	10	-2	5	-2	-5	multi-exon	FALSE	canonical	3	13	junction_4	1.6629588385662	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAACCTTTTGACTGTTTT	NA	False	NA	-5	True	AATAAA	-13	NA	148574335	148535909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_148539427_148540102_148540154_148540850_148540920_148542292_148542398_148544980_148545066_148545189_148545246_148548865_148548944_148551236_148551354_148554594_148554675_148574185
ENSMUSG00000027438.15_2	chr2	-	1559	1	ISM	ENSMUSG00000027438.15	ENSMUST00000136513.2	4311	10	36865	5	36843	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAACCTTTTGACTGTTTT	NA	False	NA	-5	True	AATAAA	-13	NA	148537468	148535909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_148535900_148537500
ENSMUSG00000027438.15_4	chr2	-	4077	8	ISM	ENSMUSG00000027438.15	ENSMUST00000028926.13	4412	11	25194	4	25118	-4	3prime_fragment	FALSE	canonical	1	1	junction_7	5.19418827505653	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACCTTTTGACTGTTTTT	NA	False	NA	-4	True	AATAAA	-14	NA	148549193	148535908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_148539427_148540102_148540154_148540850_148540920_148542292_148542398_148544980_148545066_148545189_148545246_148548865_148548944_148549078
ENSMUSG00000027439.10_14	chr2	+	1945	1	ISM	ENSMUSG00000027439.10	ENSMUST00000028928.8	4232	6	9978	4	6389	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATAATGTCTGCTTTGTA	NA	False	NA	NA	False	AATAAA	-14	NA	148532920	148534865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_148532900_148534900
ENSMUSG00000027439.10_2	chr2	+	4083	6	FSM	ENSMUSG00000027439.10	ENSMUST00000028928.8	4232	6	146	3	-42	-3	multi-exon	FALSE	canonical	3	53	junction_1	11.7983049630021	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAATGTCTGCTTTGTAA	517	False	NA	NA	False	AATAAA	-15	NA	148523088	148534866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_148523136_148525513_148526889_148528433_148528529_148529923_148530092_148531995_148532154_148532626
ENSMUSG00000027439.10_3	chr2	+	4077	6	NNC	ENSMUSG00000027439.10	novel	4232	6	NA	NA	-46	-3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	26.4423902096615	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAATGTCTGCTTTGTAA	513	False	NA	NA	False	AATAAA	-15	NA	148523084	148534866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_148523136_148525523_148526889_148528433_148528529_148529923_148530092_148531995_148532154_148532626
ENSMUSG00000027439.10_9	chr2	+	3836	5	ISM	ENSMUSG00000027439.10	ENSMUST00000028928.8	4232	6	2771	3	-818	-3	3prime_fragment	FALSE	canonical	3	65	junction_1	7.82224392358101	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAATGTCTGCTTTGTAA	3142	False	NA	NA	False	AATAAA	-15	NA	148525713	148534866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_148526889_148528433_148528529_148529923_148530092_148531995_148532154_148532626
ENSMUSG00000027447.7_0	chr2	-	753	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	105	2	-20	-2	multi-exon	FALSE	canonical	3	2071	junction_1	68	680	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTTTGAGTTGTTTCT	NA	False	NA	-8	True	ATTAAA	-18	NA	148717391	148713643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_148713964_148714736_148714851_148717072
ENSMUSG00000027452.12_1	chr2	-	2827	11	NIC	ENSMUSG00000027452.12	novel	3618	14	NA	NA	-19	-6	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	53.8924855615326	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGGGGATGTTTTTG	5035	False	NA	-11	True	AATAAA	-21	NA	150480054	150460030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150479992
ENSMUSG00000027452.12_2	chr2	-	3574	14	FSM	ENSMUSG00000027452.12	ENSMUST00000028944.4	3618	14	38	6	-6	-6	multi-exon	FALSE	canonical	3	167	junction_13	14.5093318267649	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGGGGATGTTTTTG	NA	False	NA	-11	True	AATAAA	-21	NA	150510140	150460030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150480283_150480460_150484631_150484832_150501755_150501853_150509804
ENSMUSG00000027452.12_3	chr2	-	3316	14	NNC	ENSMUSG00000027452.12	novel	3618	14	NA	NA	8022	-8	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_13	46.5577201092917	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTATGGGGATGTTTT	NA	False	NA	-13	True	AATAAA	-19	NA	150502112	150460032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150480283_150480460_150484631_150484832_150501755_150501853_150502032
ENSMUSG00000027452.12_4	chr2	-	3367	13	ISM	ENSMUSG00000027452.12	ENSMUST00000028944.4	3618	14	8197	6	8153	-6	3prime_fragment	FALSE	canonical	3	168	junction_11	14.0185888495716	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGGGGATGTTTTTG	NA	False	NA	-11	True	AATAAA	-21	NA	150501981	150460030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150480283_150480460_150484631_150484832_150501755
ENSMUSG00000027452.12_5	chr2	-	2876	10	ISM	ENSMUSG00000027452.12	ENSMUST00000028944.4	3618	14	30146	8	1	-8	3prime_fragment	FALSE	canonical	3	171	junction_6	13.5655700712511	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTATGGGGATGTTTT	5057	False	NA	-13	True	AATAAA	-19	NA	150480032	150460032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766
ENSMUSG00000027454.11_0	chr2	+	1075	7	FSM	ENSMUSG00000027454.11	ENSMUST00000028948.5	1087	7	-3	15	-3	-15	multi-exon	FALSE	canonical	3	394	junction_1	28.3058690419888	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGTTTTCACAATGGGA	2419	False	NA	8	True	AATAAA	-15	NA	150751510	150773185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769961_150770037_150772760
ENSMUSG00000027455.17_0	chr2	+	1332	9	FSM	ENSMUSG00000027455.17	ENSMUST00000028949.16	1364	9	-2	34	1	9	multi-exon	FALSE	canonical	3	1010	junction_3	133.71979799192	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAAAAACACA	NA	False	NA	-15	True	NA	NA	NA	151336210	151353191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ENSMUSG00000027455.17_1	chr2	+	3553	8	NIC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	1	9	intron_retention	FALSE	canonical	3	1303	junction_6	54.199179148841	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAAAAACACA	NA	False	NA	-15	True	NA	NA	NA	151336213	151353191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_151336333_151338503_151338602_151342634_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ENSMUSG00000027456.9_1	chr2	+	1537	10	Fusion	ENSMUSG00000032966.15_ENSMUSG00000027456.9	novel	783	6	NA	NA	-21	-8	multi-exon	FALSE	canonical	2	5	junction_2	640.533130570172	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCCAGCCCCGGTCATG	NA	False	NA	11	True	AATAAA	-11	NA	151384483	151431917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_151384665_151384737_151384786_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
ENSMUSG00000027456.9_2	chr2	+	1393	9	FSM	ENSMUSG00000027456.9	ENSMUST00000028950.9	1399	9	3	3	3	-3	multi-exon	FALSE	canonical	1	3	junction_1	9.20258115965298	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCCCGGTCATGAAAGT	NA	False	NA	16	True	AATAAA	-16	NA	151414544	151431922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_151414625_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
ENSMUSG00000027456.9_3	chr2	+	1430	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3379	-8	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	8.04285397107271	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCCAGCCCCGGTCATG	NA	False	NA	11	True	AATAAA	-11	NA	151417920	151431917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_151418043_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
ENSMUSG00000027456.9_4	chr2	+	1425	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3577	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.0987313559674	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCCAGCCCCGGTCATG	NA	False	NA	11	True	AATAAA	-11	NA	151418118	151431917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_151418236_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
ENSMUSG00000027456.9_5	chr2	+	7746	8	ISM	ENSMUSG00000027456.9	ENSMUST00000028950.9	1399	9	3633	8	3633	-8	3prime_fragment	FALSE	canonical	3	21	junction_5	4.42165358301205	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCCAGCCCCGGTCATG	NA	False	NA	11	True	AATAAA	-11	NA	151418174	151431917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
ENSMUSG00000027459.17_0	chr2	-	1694	2	FSM	ENSMUSG00000027459.17	ENSMUST00000062047.6	1754	2	58	2	58	-2	multi-exon	FALSE	canonical	3	86	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTTTGGACTCTTCTCT	NA	False	NA	-3	True	AATAAA	-20	NA	151822081	151811319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_151812845_151821912
ENSMUSG00000027463.15_0	chr2	+	2648	5	FSM	ENSMUSG00000027463.15	ENSMUST00000073228.12	2669	5	1	20	1	-8	multi-exon	FALSE	canonical	3	44	junction_1	24.8294180358703	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGGTGCTTATCCAGGTA	NA	False	NA	-2	True	NA	NA	NA	151838455	151851158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_151838572_151845971_151846599_151847451_151847940_151849400_151849525_151849865
ENSMUSG00000027463.15_3	chr2	+	2327	5	FSM	ENSMUSG00000027463.15	ENSMUST00000109861.8	2590	5	29	234	-3	-234	multi-exon	FALSE	canonical	3	48	junction_1	23.0976189249022	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGGCTGTGTACACACA	NA	False	NA	15	True	ATTAAA	-19	NA	151841813	151850908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_151841859_151845971_151846599_151847451_151847940_151849400_151849525_151849865
ENSMUSG00000027463.15_7	chr2	+	2504	4	ISM	ENSMUSG00000027463.15	ENSMUST00000109861.8	2590	5	4221	-22	4189	-2	3prime_fragment	FALSE	canonical	3	101	junction_2	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTATCCAGGTACTCTTG	3082	False	NA	4	True	NA	NA	NA	151846005	151851164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_151846599_151847451_151847940_151849400_151849525_151849865
ENSMUSG00000027465.14_0	chr2	+	3334	8	FSM	ENSMUSG00000027465.14	ENSMUST00000028963.14	3386	8	48	4	4	-4	multi-exon	FALSE	canonical	3	150	junction_1	23.7366503835013	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACTTGTCTTTGTATCA	NA	False	NA	24	True	AATAAA	-19	NA	152135795	152155912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152135961_152144071_152144258_152146865_152146947_152149908_152150096_152150249_152150352_152152305_152152448_152153236_152153425_152153629
ENSMUSG00000027465.14_16	chr2	+	3063	7	ISM	ENSMUSG00000027465.14	ENSMUST00000028963.14	3386	8	8429	5	-5942	-5	3prime_fragment	FALSE	canonical	3	152	junction_3	23.3523731841827	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCACTTGTCTTTGTATC	621	False	NA	23	True	AATAAA	-18	NA	152144176	152155911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_152144258_152146865_152146947_152149908_152150096_152150249_152150352_152152305_152152448_152153236_152153425_152153629
ENSMUSG00000027465.14_21	chr2	+	2061	1	ISM	ENSMUSG00000027465.14	ENSMUST00000028963.14	3386	8	18103	5	3732	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCACTTGTCTTTGTATC	NA	False	NA	23	True	AATAAA	-18	NA	152153850	152155911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_152153800_152155900
ENSMUSG00000027466.16_13	chr2	-	4184	10	NIC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	2	-4	intron_retention	FALSE	canonical	3	483	junction_1	61.0563390911204	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGGAAAGGTGTCATGC	NA	False	NA	-16	True	ATTAAA	-12	NA	152174302	152158257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ENSMUSG00000027466.16_18	chr2	-	3284	11	NIC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	2	-4	intron_retention	FALSE	canonical	3	483	junction_1	60.3850974993003	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGGAAAGGTGTCATGC	NA	False	NA	-16	True	ATTAAA	-12	NA	152174302	152158257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ENSMUSG00000027466.16_3	chr2	-	2350	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	30	4	2	-4	multi-exon	FALSE	canonical	3	444	junction_6	68.3604931579153	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGGAAAGGTGTCATGC	NA	False	NA	-16	True	ATTAAA	-12	NA	152174302	152158257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ENSMUSG00000027466.16_5	chr2	-	2188	11	NIC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	3	-4	combination_of_known_splicesites	FALSE	canonical	3	58	junction_5	166.375148384607	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGGAAAGGTGTCATGC	NA	False	NA	-16	True	ATTAAA	-12	NA	152174301	152158257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ENSMUSG00000027466.16_7	chr2	-	2207	13	FSM	ENSMUSG00000027466.16	ENSMUST00000028964.14	2252	13	41	4	41	-4	multi-exon	FALSE	canonical	3	72	junction_12	150.053231295505	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGGAAAGGTGTCATGC	NA	False	NA	-16	True	ATTAAA	-12	NA	152174532	152158257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
ENSMUSG00000027469.17_14	chr2	+	2975	18	FSM	ENSMUSG00000027469.17	ENSMUST00000164120.8	4365	18	87	1303	-31	-636	multi-exon	FALSE	canonical	3	159	junction_1	220.211647171926	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGGTTTCAGTCACAG	2781	False	NA	17	True	AATAAA	-16	NA	152689970	152735938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152690218_152696840_152696936_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027469.17_22	chr2	+	2956	18	NIC	ENSMUSG00000027469.17	novel	3654	18	NA	NA	-28	-636	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	218.393996520653	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGGTTTCAGTCACAG	2784	False	NA	17	True	AATAAA	-16	NA	152689973	152735938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_152690218_152696840_152696923_152709106_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027469.17_3	chr2	+	2792	18	FSM	ENSMUSG00000027469.17	ENSMUST00000109816.8	3483	18	55	636	38	-636	multi-exon	FALSE	canonical	3	597	junction_2	86.1429969118501	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGGTTTCAGTCACAG	2763	False	NA	17	True	AATAAA	-16	NA	152689952	152735938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027469.17_30	chr2	+	2964	18	FSM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	54	636	-33	-636	multi-exon	FALSE	canonical	3	159	junction_1	172.681016802699	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGGTTTCAGTCACAG	2779	False	NA	17	True	AATAAA	-16	NA	152689968	152735938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152690218_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027469.17_4	chr2	+	2803	18	NIC	ENSMUSG00000027469.17	novel	4365	18	NA	NA	40	-636	combination_of_known_junctions	FALSE	canonical	3	164	junction_2	166.868304785146	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGGTTTCAGTCACAG	2765	False	NA	17	True	AATAAA	-16	NA	152689954	152735938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_152690030_152696840_152696936_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027469.17_5	chr2	+	2787	18	FSM	ENSMUSG00000027469.17	ENSMUST00000178997.8	4161	18	71	1303	40	-636	multi-exon	FALSE	canonical	3	176	junction_2	164.31464036434	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGGTTTCAGTCACAG	2765	False	NA	17	True	AATAAA	-16	NA	152689954	152735938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152690030_152696840_152696923_152709106_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027472.15_1	chr2	-	1207	5	FSM	ENSMUSG00000027472.15	ENSMUST00000028972.9	1273	5	55	11	5	-11	multi-exon	FALSE	canonical	3	235	junction_2	13.6656503687164	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAACAACAGCTCTGAGT	8694	False	NA	NA	False	AATAAA	-10	NA	152857292	152850820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857153
ENSMUSG00000027472.15_10	chr2	-	796	1	ISM	ENSMUSG00000027472.15	ENSMUST00000028972.9	1273	5	5731	11	2794	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAACAACAGCTCTGAGT	NA	False	NA	NA	False	AATAAA	-10	NA	152851616	152850820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_152850800_152851600
ENSMUSG00000027472.15_2	chr2	-	1735	2	ISM	ENSMUSG00000027472.15	ENSMUST00000151392.2	458	3	1341	-576	1341	-4	3prime_fragment	FALSE	canonical	3	241	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTCTGAGTTGTCACC	NA	False	NA	NA	False	AATAAA	-17	NA	152853069	152850813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_152851657_152852177
ENSMUSG00000027472.15_5	chr2	-	3912	3	FSM	ENSMUSG00000027472.15	ENSMUST00000151392.2	458	3	-2885	-569	2	-11	multi-exon	FALSE	canonical	3	235	junction_2	3	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAACAACAGCTCTGAGT	8691	False	NA	NA	False	AATAAA	-10	NA	152857295	152850820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_152851657_152852177_152852259_152854300
ENSMUSG00000027472.15_8	chr2	-	2758	4	NIC	ENSMUSG00000027472.15	novel	1273	5	NA	NA	-3	-11	intron_retention	FALSE	canonical	3	235	junction_2	15.7480157480236	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAACAACAGCTCTGAGT	8697	False	NA	NA	False	AATAAA	-10	NA	152857289	152850820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_152851657_152852177_152852259_152854300_152856006_152857153
ENSMUSG00000027475.10_0	chr2	+	5607	9	FSM	ENSMUSG00000027475.10	ENSMUST00000028977.7	5635	9	23	5	23	-5	multi-exon	FALSE	canonical	3	30	junction_1	5.17052946998661	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAGGTGTCCTTGTCA	7836	False	NA	5	True	AATAAA	-24	NA	153133355	153175305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153133425_153158136_153159605_153162194_153162297_153162498_153162622_153162703_153162823_153164731_153164846_153165456_153165563_153171491_153171671_153171978
ENSMUSG00000027475.10_10	chr2	+	3397	2	ISM	ENSMUSG00000027475.10	ENSMUST00000028977.7	5635	9	38270	3	38270	-3	3prime_fragment	FALSE	canonical	3	41	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGGTGTCCTTGTCAGT	9635	False	NA	7	True	AATAAA	-26	NA	153171602	153175307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_153171671_153171978
ENSMUSG00000027475.10_11	chr2	+	2358	1	ISM	ENSMUSG00000027475.10	ENSMUST00000028977.7	5635	9	39615	5	39615	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAGGTGTCCTTGTCA	NA	False	NA	5	True	AATAAA	-24	NA	153172947	153175305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_153172900_153175300
ENSMUSG00000027475.10_6	chr2	+	4374	8	ISM	ENSMUSG00000027475.10	ENSMUST00000028977.7	5635	9	25967	6	25967	-6	3prime_fragment	FALSE	canonical	3	31	junction_1	4.89064079103534	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAAGAGGTGTCCTTGTC	NA	False	NA	4	True	AATAAA	-23	NA	153159299	153175304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_153159605_153162194_153162297_153162498_153162622_153162703_153162823_153164731_153164846_153165456_153165563_153171491_153171671_153171978
ENSMUSG00000027478.16_0	chr2	+	4084	22	NIC	ENSMUSG00000027478.16	novel	4318	24	NA	NA	45	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	25.7619487720775	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	22	True	ATTAAA	-14	NA	153491418	153529646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
ENSMUSG00000027478.16_10	chr2	+	4276	24	FSM	ENSMUSG00000027478.16	ENSMUST00000109774.9	4320	24	40	4	39	0	multi-exon	FALSE	canonical	3	28	junction_1	28.4266708280574	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	22	True	ATTAAA	-14	NA	153491412	153529646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
ENSMUSG00000027478.16_2	chr2	+	4276	24	FSM	ENSMUSG00000027478.16	ENSMUST00000056495.14	4318	24	42	0	42	0	multi-exon	FALSE	canonical	3	28	junction_1	26.7017412684545	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	22	True	ATTAAA	-14	NA	153491415	153529646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
ENSMUSG00000027478.16_4	chr2	+	4011	21	NIC	ENSMUSG00000027478.16	novel	4318	24	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	20.6421898063166	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	22	True	ATTAAA	-14	NA	153491376	153529646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
ENSMUSG00000027478.16_5	chr2	+	4080	22	FSM	ENSMUSG00000027478.16	ENSMUST00000088976.12	4130	22	46	4	46	0	multi-exon	FALSE	canonical	3	28	junction_1	27.8880983888474	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	22	True	ATTAAA	-14	NA	153491419	153529646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
ENSMUSG00000027478.16_6	chr2	+	4173	23	FSM	ENSMUSG00000027478.16	ENSMUST00000109771.2	3630	23	-133	-410	30	0	multi-exon	FALSE	canonical	3	48	junction_1	22.8903242036621	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	22	True	ATTAAA	-14	NA	153491403	153529646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
ENSMUSG00000027478.16_7	chr2	+	4157	23	FSM	ENSMUSG00000027478.16	ENSMUST00000072997.10	4208	23	47	4	43	0	multi-exon	FALSE	canonical	3	33	junction_15	25.158013034314	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	22	True	ATTAAA	-14	NA	153491416	153529646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
ENSMUSG00000027478.16_9	chr2	+	3971	21	FSM	ENSMUSG00000027478.16	ENSMUST00000109772.8	4015	21	40	4	40	0	multi-exon	FALSE	canonical	3	33	junction_15	23.6207535866238	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	22	True	ATTAAA	-14	NA	153491413	153529646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
ENSMUSG00000027479.15_0	chr2	+	2518	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	63	4755	63	-4755	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	1478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTGTCCTGTCTTCTGA	NA	False	NA	12	True	AATAAA	-13	NA	153583256	153610475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
ENSMUSG00000027479.15_33	chr2	+	4178	1	ISM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	27857	2	23738	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAAATGGCTGTGTTT	1224	False	NA	NA	False	AATAAA	-18	NA	153611050	153615228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_153611000_153615200
ENSMUSG00000027485.16_1	chr2	+	930	8	ISM	ENSMUSG00000027485.16	ENSMUST00000028987.7	1637	16	12431	5	12431	-4	3prime_fragment	FALSE	canonical	1	1	junction_4	2.49897938350513	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGCTCCTGTTGTCCGGG	NA	False	NA	NA	False	AATAAA	-9	NA	154054729	154062258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_154055034_154055384_154055439_154055913_154056073_154057180_154057249_154058135_154058182_154059090_154059155_154060123_154060201_154062100
ENSMUSG00000027487.12_1	chr2	-	1976	14	FSM	ENSMUSG00000027487.12	ENSMUST00000028990.10	1970	14	-6	0	-6	0	multi-exon	FALSE	canonical	3	80	junction_3	9.02265393460642	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTCCTTGTCTACTT	5674	False	NA	-15	True	AATAAA	-12	NA	154214645	154177305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600
ENSMUSG00000027487.12_14	chr2	-	1926	13	ISM	ENSMUSG00000027487.12	ENSMUST00000028990.10	1970	14	1762	7	-176	-7	3prime_fragment	FALSE	canonical	3	80	junction_3	9.22970747098737	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTAATGGCTTCCTTG	7442	False	NA	-22	True	AATAAA	-5	NA	154212877	154177312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555
ENSMUSG00000027487.12_9	chr2	-	2035	14	NIC	ENSMUSG00000027487.12	novel	1970	14	NA	NA	-1	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_13	25.3818180276853	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTAATGGCTTCCTTG	5707	False	NA	-22	True	AATAAA	-5	NA	154214612	154177312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214501
ENSMUSG00000027488.13_0	chr2	-	2078	8	FSM	ENSMUSG00000027488.13	ENSMUST00000109728.8	2131	8	42	11	24	-11	multi-exon	FALSE	canonical	3	100	junction_7	15.9808558939138	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCTGGCATCATGTCTG	NA	False	NA	-10	True	AATAAA	-19	NA	154249977	154218243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_154218829_154218926_154219115_154219927_154220125_154222593_154222725_154222830_154223039_154225699_154225905_154245641_154245828_154249599
ENSMUSG00000027489.16_1	chr2	-	1848	13	NNC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	-5	-8	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	11.513277359447	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGGTCTCTCTCTCTCCC	7320	False	NA	-23	True	AATAAA	-16	NA	154400777	154386326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388837_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
ENSMUSG00000027489.16_2	chr2	-	1809	13	FSM	ENSMUSG00000027489.16	ENSMUST00000000895.13	1829	13	13	7	-1	-7	multi-exon	TRUE	canonical	3	34	junction_6	10.0840220150494	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTCTCTCTCTCTCCCC	7324	False	NA	-22	True	AATAAA	-17	NA	154400773	154386325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
ENSMUSG00000027489.16_3	chr2	-	414	1	Genic_Genomic	ENSMUSG00000027489.16	novel	NA	NA	NA	NA	1990	8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTGTCTCTTGTCTGTC	NA	False	NA	-7	True	AATAAA	-32	NA	154386724	154386310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_154386300_154386700
ENSMUSG00000027489.16_7	chr2	-	1188	12	NIC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	-6	-74	intron_retention	FALSE	canonical	3	34	junction_5	10.4470328738723	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGCAGCCCTGCCTATC	7319	False	NA	NA	False	NA	NA	NA	154400778	154387038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
ENSMUSG00000027490.18_0	chr2	-	2463	7	FSM	ENSMUSG00000027490.18	ENSMUST00000103145.11	2732	7	39	230	39	-3	multi-exon	FALSE	canonical	0	0	junction_3	374.662255312108	935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGGGCTGGGTTTGAAAC	9541	False	NA	-24	True	AATAAA	-13	NA	154411773	154401556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406035_154406337_154406429_154411408
ENSMUSG00000027490.18_15	chr2	-	2886	7	FSM	ENSMUSG00000027490.18	ENSMUST00000000894.6	2755	7	-133	2	39	-2	multi-exon	FALSE	canonical	0	0	junction_3	459.079392794851	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGGGCTGGGTTTGAAACT	9541	False	NA	-23	True	AATAAA	-14	NA	154411773	154401555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406035_154406337_154406429_154410986
ENSMUSG00000027490.18_5	chr2	-	2767	6	NIC	ENSMUSG00000027490.18	novel	2732	7	NA	NA	39	-2	intron_retention	FALSE	canonical	0	0	junction_3	402.755806910341	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGGGCTGGGTTTGAAACT	9541	False	NA	-23	True	AATAAA	-14	NA	154411773	154401555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406429_154411408
ENSMUSG00000027495.5_0	chr2	+	1706	3	FSM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	45	1866	45	-1866	multi-exon	FALSE	canonical	3	138	junction_1	7.5	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGATGTCTTAATTAG	NA	False	NA	NA	False	AATACA	-9	NA	172187529	172195803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_172187768_172193374_172193545_172194505
ENSMUSG00000027495.5_3	chr2	+	411	2	ISM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	5990	2823	5990	-2823	3prime_fragment	FALSE	canonical	3	153	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCTGGTGTTTTAATT	NA	False	NA	NA	False	NA	NA	NA	172193474	172194846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_172193545_172194505
ENSMUSG00000027495.5_4	chr2	+	2680	1	ISM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	7498	7	7498	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTCTGCGGTCTGCCGT	NA	False	NA	NA	False	AATAAA	-10	NA	172194982	172197662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_172195000_172197700
ENSMUSG00000027496.16_0	chr2	-	1836	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	15	11	1	-5	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	1337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACCTGGAGTACGTGGG	NA	False	NA	-13	True	AATATA	-11	NA	172212440	172198120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
ENSMUSG00000027496.16_4	chr2	-	1914	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	-14	5	1	-5	multi-exon	FALSE	canonical	3	87	junction_8	405.788969169937	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACCTGGAGTACGTGGG	NA	False	NA	-13	True	AATATA	-11	NA	172212440	172198120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
ENSMUSG00000027498.15_0	chr2	+	1845	6	FSM	ENSMUSG00000027498.15	ENSMUST00000116375.2	3451	6	241	1365	241	-1365	multi-exon	FALSE	canonical	3	206	junction_1	74.6527963307471	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGTTCCTCCTTCTTCA	NA	False	NA	17	True	AATAAA	-17	NA	172212894	172223003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_172212948_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
ENSMUSG00000027498.15_1	chr2	+	4310	5	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	7	-1369	intron_retention	FALSE	canonical	3	132	junction_1	114.73120761153	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCACTGTTCCTCCTTC	NA	False	NA	13	True	AATAAA	-13	NA	172212607	172222999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971_172218170_172219535
ENSMUSG00000027498.15_11	chr2	+	4191	5	ISM	ENSMUSG00000027498.15	ENSMUST00000116375.2	3451	6	244	1369	244	-1369	intron_retention	FALSE	canonical	3	206	junction_1	83.4056353012193	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCACTGTTCCTCCTTC	NA	False	NA	13	True	AATAAA	-13	NA	172212897	172222999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_172212948_172214848_172215050_172217557_172217836_172217971_172218170_172219535
ENSMUSG00000027498.15_2	chr2	+	1954	6	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	10	-1369	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	102.721760109531	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCACTGTTCCTCCTTC	NA	False	NA	13	True	AATAAA	-13	NA	172212610	172222999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
ENSMUSG00000027498.15_24	chr2	+	1400	1	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	8946	-1369	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCACTGTTCCTCCTTC	NA	False	NA	13	True	AATAAA	-13	NA	172221599	172222999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_172221600_172223000
ENSMUSG00000027499.13_0	chr3	+	3651	3	FSM	ENSMUSG00000027499.13	ENSMUST00000028999.12	3617	3	-37	3	-36	-3	multi-exon	FALSE	canonical	2	5	junction_2	0.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTCTCTCAAGAGT	2637	False	NA	18	True	ATTAAA	-19	NA	7431692	7510423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_7431813_7502397_7502576_7507070
ENSMUSG00000027500.11_0	chr3	+	785	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	181	1107	26	-1076	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTTTTGCTTGATGTT	NA	False	NA	19	True	NA	NA	NA	8574600	8625559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
ENSMUSG00000027500.11_12	chr3	+	999	1	ISM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	51245	3	339	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAACGGTTTGGTCTGGT	NA	False	NA	20	True	AATAAA	-20	NA	8625664	8626663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_8625700_8626700
ENSMUSG00000027502.12_0	chr2	+	2140	9	FSM	ENSMUSG00000027502.12	ENSMUST00000029005.4	2173	9	24	9	-22	-9	multi-exon	FALSE	canonical	3	407	junction_4	19.7416912902618	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATATTTGGGGGGGTTG	NA	False	NA	7	True	AATAAA	-7	NA	172282499	172311819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348_172308445_172310515
ENSMUSG00000027506.16_2	chr3	-	2080	6	FSM	ENSMUSG00000027506.16	ENSMUST00000120143.8	6317	6	232	4005	-13	0	multi-exon	FALSE	canonical	0	0	junction_1	1105.06589848751	3439	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATAGGTTTCAATATTTA	NA	False	NA	-28	True	AATAAA	-15	NA	9069551	8994657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ENSMUSG00000027508.16_0	chr3	-	1282	1	ISM	ENSMUSG00000027508.16	ENSMUST00000161949.8	8256	9	144913	6	16236	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAACTTGTTAAAATTTG	7328	False	NA	NA	False	AATAAA	-14	NA	9753826	9752544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_9752500_9753800
ENSMUSG00000027508.16_1	chr3	-	8196	9	FSM	ENSMUSG00000027508.16	ENSMUST00000161949.8	8256	9	50	10	1	-10	multi-exon	FALSE	canonical	1	2	junction_6	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATAAAAACTTGTTAAAA	NA	False	NA	NA	False	AATAAA	-10	NA	9898689	9752548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_9759190_9761178_9761239_9764284_9764872_9767017_9767115_9769763_9769816_9771142_9771350_9817472_9817547_9852321_9852381_9898270
ENSMUSG00000027509.12_0	chr2	+	1629	12	FSM	ENSMUSG00000027509.12	ENSMUST00000029013.10	1742	12	51	62	44	-62	multi-exon	FALSE	canonical	3	1013	junction_10	106.078950794457	1154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCCTGCCCCTTCATCCC	NA	False	NA	23	True	AATAAA	-12	NA	172841960	172857470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_172842170_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
ENSMUSG00000027510.18_0	chr2	+	1740	4	FSM	ENSMUSG00000027510.18	ENSMUST00000029014.16	1768	4	28	0	17	0	multi-exon	FALSE	canonical	3	657	junction_1	63.0766729200793	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAAGGTGGTTTGAG	NA	False	NA	NA	False	AATAAA	-14	NA	172863722	172876518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_172864064_172864584_172864709_172865119_172865175_172875298
ENSMUSG00000027510.18_1	chr2	+	1876	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173720.2	620	4	-181	-1075	17	0	multi-exon	FALSE	canonical	3	8	junction_1	365.954763446097	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAAGGTGGTTTGAG	NA	False	NA	NA	False	AATAAA	-14	NA	172863722	172876518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_172864200_172864584_172864709_172865119_172865175_172875298
ENSMUSG00000027510.18_2	chr2	+	2260	3	FSM	ENSMUSG00000027510.18	ENSMUST00000155512.8	2281	3	18	3	18	0	multi-exon	FALSE	canonical	3	757	junction_2	26	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAAGGTGGTTTGAG	NA	False	NA	NA	False	AATAAA	-14	NA	172863723	172876518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_172864709_172865119_172865175_172875298
ENSMUSG00000027510.18_3	chr2	+	1717	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173878.8	936	4	31	-812	17	0	multi-exon	FALSE	canonical	0	0	junction_1	369.719713657071	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAAGGTGGTTTGAG	NA	False	NA	NA	False	AATAAA	-14	NA	172863722	172876518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_172864041_172864584_172864709_172865119_172865175_172875298
ENSMUSG00000027519.11_0	chr2	+	1898	7	FSM	ENSMUSG00000027519.11	ENSMUST00000029024.10	7155	7	96	5161	0	1028	multi-exon	FALSE	canonical	3	160	junction_6	19.3512847692917	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGCCTGACTAGTCCTTC	NA	False	NA	4	True	AATAAA	-17	NA	173501648	173543975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_173501935_173503224_173503305_173529939_173530022_173536902_173536975_173537051_173537159_173537682_173537793_173542814
ENSMUSG00000027519.11_4	chr2	+	1814	6	FSM	ENSMUSG00000027519.11	ENSMUST00000142820.8	7045	6	98	5133	2	1028	multi-exon	FALSE	canonical	3	18	junction_2	72.9191332916128	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGCCTGACTAGTCCTTC	NA	False	NA	4	True	AATAAA	-17	NA	173501650	173543975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_173501935_173503224_173503305_173536902_173536975_173537051_173537159_173537682_173537793_173542814
ENSMUSG00000027519.11_8	chr2	+	3421	1	ISM	ENSMUSG00000027519.11	ENSMUST00000029024.10	7155	7	44137	26	44041	2	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGCGTGTTTCAGCCTCC	NA	False	NA	1	True	AATAAA	-14	NA	173545689	173549110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_173545700_173549100
ENSMUSG00000027520.17_2	chr1	+	773	6	Fusion	ENSMUSG00000086730.3_ENSMUSG00000027520.17	novel	462	2	NA	NA	-122	7906	multi-exon	FALSE	canonical	3	22	junction_2	8.44748483277715	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGTTAATTCAGTCGG	NA	False	NA	NA	False	CATAAA	-16	NA	63239744	63342087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr1_+_63239834_63246673_63246774_63317089_63317143_63319925_63320037_63334074_63334206_63341798
ENSMUSG00000027520.17_3	chr1	+	2751	1	ISM	ENSMUSG00000027520.17	ENSMUST00000239483.2	12523	6	38555	6	21082	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATATATTATGTGTTTGT	NA	False	NA	NA	False	AATAAA	-10	NA	63350978	63353729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_63351000_63353700
ENSMUSG00000027522.16_0	chr2	+	4344	9	FSM	ENSMUSG00000027522.16	ENSMUST00000087908.10	3865	9	-594	115	6	-114	multi-exon	FALSE	canonical	1	10	junction_1	35.0633355515416	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATGACTTTTTTT	NA	False	NA	11	True	AATAAA	-20	NA	173918120	173941449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_173918983_173926438_173926451_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ENSMUSG00000027522.16_2	chr2	+	4292	9	NNC	ENSMUSG00000027522.16	novel	3865	9	NA	NA	7	-114	intron_retention	FALSE	canonical	1	4	junction_1	36.4245796132227	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATGACTTTTTTT	NA	False	NA	11	True	AATAAA	-20	NA	173918121	173941449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_173918932_173926438_173926451_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ENSMUSG00000027522.16_22	chr2	+	3353	6	ISM	ENSMUSG00000027522.16	ENSMUST00000044638.13	3731	9	14424	123	14416	-123	3prime_fragment	FALSE	canonical	3	84	junction_2	10.1311401135312	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGCTTCAATCCAAAATG	NA	False	NA	2	True	AATAAA	-11	NA	173933274	173941440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ENSMUSG00000027522.16_23	chr2	+	3055	4	ISM	ENSMUSG00000027522.16	ENSMUST00000044638.13	3731	9	16376	114	16368	-114	3prime_fragment	FALSE	canonical	3	88	junction_2	11.3431330181157	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATGACTTTTTTT	NA	False	NA	11	True	AATAAA	-20	NA	173935226	173941449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_173935319_173935721_173935866_173936852_173936934_173938711
ENSMUSG00000027522.16_25	chr2	+	4040	7	ISM	ENSMUSG00000027522.16	ENSMUST00000044638.13	3731	9	12993	114	12985	-114	3prime_fragment	FALSE	canonical	3	83	junction_1	10.0567832276971	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATGACTTTTTTT	NA	False	NA	11	True	AATAAA	-20	NA	173931843	173941449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ENSMUSG00000027522.16_26	chr2	+	3177	5	ISM	ENSMUSG00000027522.16	ENSMUST00000044638.13	3731	9	15388	114	15380	-114	3prime_fragment	FALSE	canonical	3	84	junction_1	11.3219918742243	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATGACTTTTTTT	NA	False	NA	11	True	AATAAA	-20	NA	173934238	173941449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ENSMUSG00000027522.16_29	chr2	+	2914	3	ISM	ENSMUSG00000027522.16	ENSMUST00000044638.13	3731	9	16920	114	16912	-114	3prime_fragment	FALSE	canonical	3	88	junction_1	12.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATGACTTTTTTT	NA	False	NA	11	True	AATAAA	-20	NA	173935770	173941449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_173935866_173936852_173936934_173938711
ENSMUSG00000027522.16_3	chr2	+	4326	8	NIC	ENSMUSG00000027522.16	novel	3865	9	NA	NA	12	-114	intron_retention	FALSE	canonical	3	11	junction_1	29.7787761703546	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATGACTTTTTTT	NA	False	NA	11	True	AATAAA	-20	NA	173918126	173941449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_173918983_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ENSMUSG00000027522.16_30	chr2	+	2921	2	ISM	ENSMUSG00000027522.16	ENSMUST00000044638.13	3731	9	18008	6	18000	-6	3prime_fragment	FALSE	canonical	3	113	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCATCCAGCATTCCTA	NA	False	NA	119	True	AATAAA	-17	NA	173936858	173941557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_173936934_173938711
ENSMUSG00000027522.16_31	chr2	+	2088	1	ISM	ENSMUSG00000027522.16	ENSMUST00000087908.10	3865	9	20647	115	20503	-114	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATGACTTTTTTT	NA	False	NA	11	True	AATAAA	-20	NA	173939361	173941449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_173939400_173941400
ENSMUSG00000027522.16_4	chr2	+	4123	8	NIC	ENSMUSG00000027522.16	novel	3865	9	NA	NA	0	-179	intron_retention	TRUE	canonical	1	9	junction_4	41.3309193940709	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTAATTGGTCAGATAAG	NA	False	NA	-54	True	AATAAA	-8	NA	173918110	173941384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_173918983_173926438_173926451_173932413_173932522_173933274_173933416_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ENSMUSG00000027522.16_5	chr2	+	4278	8	NNC	ENSMUSG00000027522.16	novel	3865	9	NA	NA	9	-114	intron_retention	FALSE	canonical	3	30	junction_1	23.5554058096468	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATGACTTTTTTT	NA	False	NA	11	True	AATAAA	-20	NA	173918123	173941449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_173918932_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ENSMUSG00000027522.16_9	chr2	+	3612	10	NIC	ENSMUSG00000027522.16	novel	3865	9	NA	NA	1	-114	combination_of_known_junctions	FALSE	canonical	1	10	junction_2	38.0966930939072	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATGACTTTTTTT	NA	False	NA	11	True	AATAAA	-20	NA	173918111	173941449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_173918176_173918916_173918983_173926438_173926451_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
ENSMUSG00000027523.21_10	chr2	+	1689	11	FSM	ENSMUSG00000027523.21	ENSMUST00000109085.8	1789	11	68	32	-15	0	multi-exon	FALSE	non_canonical	0	0	junction_2	262.324150622851	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCAATAAAAATTAA	NA	False	NA	-17	True	NA	NA	NA	174171866	174188505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_174172228_174176004_174176078_174183442_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUSG00000027523.21_11	chr2	+	1749	12	NIC	ENSMUSG00000027523.21	novel	1716	12	NA	NA	-19	11	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_3	251.140045221883	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATTAAAAATGAGCAAA	NA	False	NA	-6	True	ATTAAA	-9	NA	174171862	174188516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_174172228_174176004_174176078_174178539_174178585_174183442_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUSG00000027523.21_4	chr2	+	1607	12	NIC	ENSMUSG00000027523.21	novel	3903	13	NA	NA	14	8	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	236.631666212588	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAATTAAAAATGAGC	NA	False	NA	-9	True	ATTAAA	-6	NA	174169505	174188513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_174169735_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUSG00000027523.21_5	chr2	+	1743	12	FSM	ENSMUSG00000027523.21	ENSMUST00000109087.8	1716	12	-16	-11	-16	11	multi-exon	FALSE	canonical	3	678	junction_2	91.1435159288239	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATTAAAAATGAGCAAA	NA	False	NA	-6	True	ATTAAA	-9	NA	174171865	174188516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUSG00000027525.19_0	chr2	+	2273	13	FSM	ENSMUSG00000027525.19	ENSMUST00000108916.8	2656	13	-43	426	-43	-7	multi-exon	FALSE	canonical	0	0	junction_1	1.70579079087156	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGAATAAAGGCTTTCAC	1655	False	NA	NA	False	ATTAAA	-18	NA	177760928	177977858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_177761096_177897905_177898068_177901970_177902049_177911109_177911293_177920689_177920900_177924802_177924978_177925652_177925901_177944477_177944632_177969930_177969987_177973372_177973435_177974614_177974756_177975843_177975921_177977298
ENSMUSG00000027531.17_0	chr3	-	2119	9	FSM	ENSMUSG00000027531.17	ENSMUST00000065938.15	4185	9	60	2006	-7	-8	multi-exon	FALSE	canonical	3	306	junction_8	38.1901083397259	359	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTAAGACTTAGGAATACC	NA	False	NA	-20	True	ATTAAA	-9	NA	10396439	10379021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_10380362_10381162_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
ENSMUSG00000027533.11_0	chr3	+	670	4	FSM	ENSMUSG00000027533.11	ENSMUST00000029046.9	987	4	43	274	-14	-2	multi-exon	FALSE	canonical	3	202	junction_1	88.411914732499	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATGATATGTGTGTGG	NA	False	NA	NA	False	AATAAA	-13	NA	10077650	10081393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_10077779_10080030_10080204_10080531_10080634_10081126
ENSMUSG00000027533.11_4	chr3	+	317	2	FSM	ENSMUSG00000027533.11	ENSMUST00000123744.2	3238	2	2919	2	2919	-2	multi-exon	FALSE	canonical	3	417	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATGATATGTGTGTGG	NA	False	NA	NA	False	AATAAA	-13	NA	10080583	10081393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_10080634_10081126
ENSMUSG00000027534.17_1	chr3	-	2159	7	FSM	ENSMUSG00000027534.17	ENSMUST00000099223.11	2512	7	17	336	2	-7	multi-exon	FALSE	canonical	3	23	junction_1	44.7837396086273	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCAGTTGGGTGAGTTT	NA	False	NA	-6	True	ATTAAA	-13	NA	10505145	10483212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_10484284_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
ENSMUSG00000027534.17_4	chr3	-	1924	7	ISM	ENSMUSG00000027534.17	ENSMUST00000029047.12	2288	8	1993	1	1993	-1	3prime_fragment	FALSE	canonical	3	117	junction_2	13.2591687354659	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGGTGAGTTTCTTTAG	NA	False	NA	0	True	ATTAAA	-19	NA	10503154	10483206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_10484284_10485256_10485377_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870
ENSMUSG00000027534.17_5	chr3	-	2279	8	FSM	ENSMUSG00000027534.17	ENSMUST00000029047.12	2288	8	2	7	2	-7	multi-exon	FALSE	canonical	3	117	junction_2	14.2771402841703	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCAGTTGGGTGAGTTT	NA	False	NA	-6	True	ATTAAA	-13	NA	10505145	10483212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_10484284_10485256_10485377_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
ENSMUSG00000027536.7_0	chr3	+	1178	5	FSM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	64	4946	13	-4946	multi-exon	FALSE	canonical	3	174	junction_1	13.9709520076479	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACAGACTTGTTCTAGTG	NA	False	NA	1	True	AATAAA	-10	NA	10432030	10455451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971
ENSMUSG00000027536.7_9	chr3	+	3311	1	ISM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	25116	4	25065	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGAAATGTATCCTATTT	NA	False	NA	-3	True	ATTAAA	-12	NA	10457082	10460393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_10457100_10460400
ENSMUSG00000027540.14_0	chr2	+	1745	9	FSM	ENSMUSG00000027540.14	ENSMUST00000029053.8	4213	9	39	2429	-6	2219	multi-exon	FALSE	canonical	3	103	junction_4	11.7997616501351	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGGCAGGTTTTTGTTA	1099	False	NA	NA	False	AAAAAG	-31	NA	167774285	167818876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_167774477_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
ENSMUSG00000027540.14_13	chr2	+	2024	1	ISM	ENSMUSG00000027540.14	ENSMUST00000029053.8	4213	9	45027	8	26306	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACACAGGCGTGATGT	NA	False	NA	2	True	AATAAA	-8	NA	167819273	167821297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_167819300_167821300
ENSMUSG00000027540.14_4	chr2	+	1870	10	FSM	ENSMUSG00000027540.14	ENSMUST00000126839.8	4292	10	-7	2429	-7	2219	multi-exon	FALSE	canonical	1	2	junction_2	47.9021636666927	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGGCAGGTTTTTGTTA	1098	False	NA	NA	False	AAAAAG	-31	NA	167774284	167818876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_167774477_167793875_167794000_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
ENSMUSG00000027544.17_1	chr2	-	2427	7	FSM	ENSMUSG00000027544.17	ENSMUST00000029057.13	2310	7	-122	5	18	-5	multi-exon	FALSE	canonical	0	0	junction_2	1.10554159678513	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAGTGTGCATGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	168432233	168361022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168361473_168365157_168365299_168376837_168377011_168378122_168378326_168409058_168409231_168412517_168413554_168431981
ENSMUSG00000027546.16_0	chr2	-	3681	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109176.8	3691	28	8	2	8	-2	multi-exon	FALSE	canonical	3	157	junction_27	35.3190436202576	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTGCAGGCTTTTCATT	6469	False	NA	-25	True	GATAAA	-14	NA	168583874	168476359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168583601
ENSMUSG00000027546.16_1	chr2	-	3664	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109175.9	3729	28	63	2	63	-2	multi-exon	TRUE	canonical	3	71	junction_27	47.3339708993171	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTGCAGGCTTTTCATT	NA	False	NA	-25	True	GATAAA	-14	NA	168576196	168476359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168575940
ENSMUSG00000027546.16_4	chr2	-	3437	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109177.8	3456	28	16	3	16	-3	multi-exon	FALSE	canonical	2	6	junction_27	57.8025587882503	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGCAGGCTTTTCAT	6306	False	NA	-26	True	GATAAA	-13	NA	168584037	168476360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168584007
ENSMUSG00000027547.18_1	chr2	-	4981	4	FSM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	88	4	4	-4	multi-exon	FALSE	canonical	3	532	junction_3	46.1808040928985	1081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGGCGGGCTTGTGTGTA	NA	False	NA	-21	True	AATAAA	-18	NA	168609033	168590255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168592381_168594373_168594661_168596353_168598721_168608831
ENSMUSG00000027547.18_3	chr2	-	3663	3	ISM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	11517	4	259	-4	3prime_fragment	FALSE	canonical	3	593	junction_2	26	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGGCGGGCTTGTGTGTA	4158	False	NA	-21	True	AATAAA	-18	NA	168597604	168590255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_168592381_168594373_168594661_168596353
ENSMUSG00000027547.18_4	chr2	-	1470	1	ISM	ENSMUSG00000027547.18	ENSMUST00000075044.10	2534	3	17224	4	6138	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGGCGGGCTTGTGTGTA	9904	False	NA	-21	True	AATAAA	-18	NA	168591725	168590255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_168590300_168591700
ENSMUSG00000027547.18_5	chr2	-	5101	4	NIC	ENSMUSG00000027547.18	novel	5073	4	NA	NA	-169	-4	intron_retention	FALSE	canonical	3	69	junction_3	260.140133176119	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGGCGGGCTTGTGTGTA	NA	False	NA	-21	True	AATAAA	-18	NA	168607335	168590255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_168592381_168594373_168594661_168596353_168598721_168607013
ENSMUSG00000027547.18_7	chr2	-	3638	4	FSM	ENSMUSG00000027547.18	ENSMUST00000103074.2	3741	4	99	4	15	-4	multi-exon	FALSE	canonical	3	42	junction_2	261.72037665332	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGGCGGGCTTGTGTGTA	NA	False	NA	-21	True	AATAAA	-18	NA	168609022	168590255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168592381_168594373_168594661_168597685_168598721_168608831
ENSMUSG00000027550.15_0	chr3	+	3352	19	FSM	ENSMUSG00000027550.15	ENSMUST00000169079.8	5638	19	29	2257	-27	-59	multi-exon	FALSE	canonical	3	53	junction_7	12.3057750168542	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGATGGAGCTATCATAA	NA	False	NA	NA	False	AATAAA	-16	NA	14598911	14631104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
ENSMUSG00000027550.15_11	chr3	+	2613	2	NIC	ENSMUSG00000027550.15	novel	1518	10	NA	NA	-24	-14737	intron_retention	FALSE	canonical	3	64	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-30	NA	14598914	14601796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_14601265_14601533
ENSMUSG00000027550.15_13	chr3	+	3325	19	FSM	ENSMUSG00000027550.15	ENSMUST00000108370.9	3359	19	26	8	-9	-8	multi-exon	FALSE	canonical	2	3	junction_18	19.4050394371038	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATTTATAACAGTTTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	14598873	14637710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14637463
ENSMUSG00000027550.15_2	chr3	+	3305	19	FSM	ENSMUSG00000027550.15	ENSMUST00000091325.10	3391	19	27	59	27	-59	multi-exon	FALSE	canonical	2	8	junction_6	18.5947689444845	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGATGGAGCTATCATAA	NA	False	NA	NA	False	AATAAA	-16	NA	14598910	14631104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605127_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
ENSMUSG00000027550.15_31	chr3	+	1345	1	NIC	ENSMUSG00000027550.15	novel	5638	19	NA	NA	14322	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGATGGAGCTATCATAATA	NA	False	NA	NA	False	AATAAA	-18	NA	14629761	14631106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_14629800_14631100
ENSMUSG00000027551.16_0	chr2	-	1998	5	NIC	ENSMUSG00000027551.16	novel	2848	9	NA	NA	62	-8	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	9.69535971483266	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGGAGGGATGTGAGCG	NA	False	NA	NA	False	AATAAA	-14	NA	168754491	168735258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_168736454_168741704_168741957_168748003_168748067_168748759_168748910_168754153
ENSMUSG00000027551.16_24	chr2	-	977	6	FSM	ENSMUSG00000027551.16	ENSMUST00000109161.3	1009	6	24	8	1	-8	multi-exon	FALSE	canonical	3	129	junction_1	185.215982031789	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCACTGTTACTGTTG	NA	False	NA	-9	True	TATAAA	-11	NA	168797185	168776740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168776860_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
ENSMUSG00000027551.16_6	chr2	-	2429	6	FSM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	2	7	2	-7	multi-exon	FALSE	canonical	3	382	junction_1	95.1075181045116	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCGTATAGTTTGTATTGT	NA	False	NA	-7	True	AATAAA	-22	NA	168797190	168767287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
ENSMUSG00000027552.15_1	chr3	+	1747	8	FSM	ENSMUSG00000027552.15	ENSMUST00000165922.3	1751	8	-5	9	-5	-9	multi-exon	FALSE	non_canonical	0	0	junction_3	75.6598186837988	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGACTTTATTGATCTTTG	1947	False	NA	20	True	AATAAA	-13	NA	14643725	14671359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_14644084_14652369_14652480_14653199_14653362_14666059_14666107_14667707_14667773_14668697_14668966_14670184_14670230_14670667
ENSMUSG00000027552.15_3	chr3	+	4282	6	NIC	ENSMUSG00000027552.15	novel	1751	8	NA	NA	-14	-9	intron_retention	FALSE	non_canonical	0	0	junction_3	89.1636697315672	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGACTTTATTGATCTTTG	1938	False	NA	20	True	AATAAA	-13	NA	14643716	14671359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_14644084_14652369_14652480_14653199_14653362_14666059_14668966_14670184_14670230_14670667
ENSMUSG00000027552.15_9	chr3	+	2685	7	NIC	ENSMUSG00000027552.15	novel	1751	8	NA	NA	-15	-6	intron_retention	FALSE	non_canonical	0	0	junction_3	81.677040157494	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTATTGATCTTTGGGG	1937	False	NA	23	True	AATAAA	-16	NA	14643715	14671362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_14644084_14652369_14652480_14653199_14653362_14666059_14666107_14667707_14668966_14670184_14670230_14670667
ENSMUSG00000027555.9_1	chr3	+	1665	7	FSM	ENSMUSG00000027555.9	ENSMUST00000029071.9	2299	7	23	611	23	-611	multi-exon	FALSE	canonical	3	101	junction_4	16.344384016808	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATGCCTAAGCCATTCA	2202	False	NA	NA	False	ATTAAA	-20	NA	14706809	14727451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514
ENSMUSG00000027560.5_0	chr2	+	1692	8	FSM	ENSMUSG00000027560.5	ENSMUST00000029075.5	1768	8	66	10	66	-10	multi-exon	FALSE	canonical	0	0	junction_2	9.45666809339164	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCAGTATTCGTTAGTT	NA	False	NA	4	True	AATAAA	-5	NA	170573792	170721679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_170574109_170642769_170642878_170671759_170671875_170671988_170672109_170674801_170674992_170683339_170683476_170712730_170712852_170721093
ENSMUSG00000027560.5_2	chr2	+	991	3	NNC	ENSMUSG00000027560.5	novel	1768	8	NA	NA	131735	-1	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	4	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCGTTAGTTCTTTCTGCA	NA	False	NA	13	True	AATAAA	-14	NA	170705461	170721688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_170705737_170712730_170712852_170721093
ENSMUSG00000027560.5_4	chr2	+	707	2	ISM	ENSMUSG00000027560.5	ENSMUST00000029075.5	1768	8	139010	4	139010	-4	3prime_fragment	FALSE	canonical	3	28	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTCGTTAGTTCTTTCT	NA	False	NA	10	True	AATAAA	-11	NA	170712736	170721685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_170712852_170721093
ENSMUSG00000027560.5_5	chr2	+	700	2	NNC	ENSMUSG00000027560.5	novel	1768	8	NA	NA	144120	-1	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCGTTAGTTCTTTCTGCA	NA	False	NA	13	True	AATAAA	-14	NA	170717846	170721688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_170717952_170721093
ENSMUSG00000027562.13_0	chr3	+	1695	8	NIC	ENSMUSG00000027562.13	novel	1788	7	NA	NA	8	-2	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	37.7661980385333	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGGGTGCCTGATTGT	NA	False	NA	9	True	AATAAA	-12	NA	14951340	14965828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_14951432_14951669_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
ENSMUSG00000027562.13_1	chr3	+	1523	7	FSM	ENSMUSG00000027562.13	ENSMUST00000029078.9	1788	7	263	2	52	-2	multi-exon	FALSE	canonical	3	122	junction_4	9.4339811320566	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGGGTGCCTGATTGT	NA	False	NA	9	True	AATAAA	-12	NA	14951750	14965828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
ENSMUSG00000027566.16_0	chr2	-	906	7	FSM	ENSMUSG00000027566.16	ENSMUST00000029082.9	914	7	6	2	6	-2	multi-exon	FALSE	canonical	3	3926	junction_1	568.041078326794	1571	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTGTGATGAGAACCTG	NA	False	NA	-14	True	AATAAA	-15	NA	179684220	179678168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
ENSMUSG00000027569.16_0	chr2	+	1802	4	FSM	ENSMUSG00000027569.16	ENSMUST00000150757.8	1825	4	9	14	0	3	multi-exon	TRUE	canonical	3	65	junction_2	3.55902608401044	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCTATC	NA	False	NA	NA	False	ATTAAA	-6	NA	180224524	180228083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180224749_180225193_180225316_180226198_180226665_180227093
ENSMUSG00000027569.16_1	chr2	+	1486	5	FSM	ENSMUSG00000027569.16	ENSMUST00000029085.9	1510	5	24	0	4	0	multi-exon	FALSE	canonical	3	47	junction_3	10.4253297309965	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACTAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-3	NA	180224528	180228080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180224749_180225193_180225316_180226198_180226281_180226589_180226665_180227093
ENSMUSG00000027569.16_2	chr2	+	2651	3	FSM	ENSMUSG00000027569.16	ENSMUST00000149969.2	2673	3	7	15	7	2	multi-exon	FALSE	canonical	3	72	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAACCTAT	NA	False	NA	NA	False	ATTAAA	-5	NA	180224557	180228082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180224749_180225193_180226665_180227093
ENSMUSG00000027569.16_5	chr2	+	1561	5	NIC	ENSMUSG00000027569.16	novel	1510	5	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	27.8836869871974	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACTAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-3	NA	180224556	180228080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_180224749_180225193_180225316_180226198_180226281_180226486_180226665_180227093
ENSMUSG00000027569.16_7	chr2	+	1579	3	ISM	ENSMUSG00000027569.16	ENSMUST00000150757.8	1825	4	677	14	642	3	3prime_fragment	FALSE	canonical	3	65	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCTATC	NA	False	NA	NA	False	ATTAAA	-6	NA	180225192	180228083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_180225316_180226198_180226665_180227093
ENSMUSG00000027569.16_8	chr2	+	1043	2	FSM	ENSMUSG00000027569.16	ENSMUST00000130277.8	3150	2	2092	15	2060	2	multi-exon	FALSE	canonical	3	73	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAACCTAT	NA	False	NA	NA	False	ATTAAA	-5	NA	180226610	180228082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180226665_180227093
ENSMUSG00000027569.16_9	chr2	+	721	1	ISM	ENSMUSG00000027569.16	ENSMUST00000150757.8	1825	4	2847	14	2812	3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCTATC	NA	False	NA	NA	False	ATTAAA	-6	NA	180227362	180228083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_180227400_180228100
ENSMUSG00000027570.16_4	chr2	+	2160	22	ISM	ENSMUSG00000027570.16	ENSMUST00000103059.2	2846	32	6751	386	1788	197	3prime_fragment	FALSE	canonical	2	8	junction_11	3.68363421063118	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATTAGTACTGGTTATAG	NA	False	NA	NA	False	AATAAA	-18	NA	180246765	180263592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_180247068_180247519_180247574_180248267_180248322_180248600_180248655_180248875_180248930_180249419_180249474_180250224_180250279_180251118_180251173_180251273_180251328_180251848_180251894_180251982_180252037_180252452_180252507_180253052_180253107_180253221_180253294_180254746_180254783_180255939_180255985_180257080_180257114_180257269_180257417_180257595_180257651_180258173_180258357_180261485_180261564_180263022
ENSMUSG00000027573.12_0	chr2	+	1567	5	FSM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	71	17	71	-14	multi-exon	FALSE	canonical	3	169	junction_3	7.56224173112709	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTCCAGAATAACCACAAT	NA	False	NA	1	True	AATAAA	-12	NA	180351980	180360509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651_180358850_180359630
ENSMUSG00000027573.12_11	chr2	+	600	1	ISM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	8006	11	5577	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATAACCACAATGGCTTC	NA	False	NA	7	True	AATAAA	-18	NA	180359915	180360515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_180359900_180360500
ENSMUSG00000027573.12_6	chr2	+	2153	4	ISM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	65	218	65	-215	intron_retention	FALSE	canonical	3	169	junction_3	8.65383665716478	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGTTTGGATCGGTTT	NA	False	NA	47	True	TATAAA	-38	NA	180351974	180360308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651
ENSMUSG00000027574.16_0	chr2	-	943	7	FSM	ENSMUSG00000027574.16	ENSMUST00000103053.10	950	7	3	4	-2	-4	multi-exon	FALSE	canonical	3	96	junction_2	10.8576649832682	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAACAATTCGCATCCC	NA	False	NA	NA	False	NA	NA	NA	180596489	180576568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_180576823_180577735_180577821_180578943_180579005_180584822_180585021_180585533_180585615_180585869_180586008_180596363
ENSMUSG00000027574.16_2	chr2	-	2948	5	NIC	ENSMUSG00000027574.16	novel	865	6	NA	NA	31	-2	intron_retention	FALSE	canonical	3	100	junction_4	10.9857862713599	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACAATTCGCATCCCTG	NA	False	NA	NA	False	NA	NA	NA	180596456	180576566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_180579005_180584822_180585021_180585533_180585615_180585869_180586008_180596363
ENSMUSG00000027575.20_0	chr2	+	2613	14	FSM	ENSMUSG00000027575.20	ENSMUST00000029092.13	2714	14	31	70	0	-2	multi-exon	FALSE	canonical	3	201	junction_1	25.5745805752046	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGTTCTGTGGTTTGTGT	4065	False	NA	-45	True	NA	NA	NA	180609057	180624249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
ENSMUSG00000027575.20_1	chr2	+	2690	14	NIC	ENSMUSG00000027575.20	novel	2714	14	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	65.799947842644	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTCTGTGGTTTGTGTGT	4058	False	NA	-43	True	NA	NA	NA	180609050	180624251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_180609123_180609326_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
ENSMUSG00000027575.20_5	chr2	+	3284	13	NIC	ENSMUSG00000027575.20	novel	2714	14	NA	NA	-6	-2	intron_retention	FALSE	canonical	3	201	junction_1	24.4135379110307	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGTTCTGTGGTTTGTGT	4059	False	NA	-45	True	NA	NA	NA	180609051	180624249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
ENSMUSG00000027577.15_1	chr2	-	4477	6	FSM	ENSMUSG00000027577.15	ENSMUST00000067120.14	4565	6	87	1	7	-1	multi-exon	FALSE	canonical	0	0	junction_1	2.1540659228538	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCAGCGTGTGGCCCTGTCT	1623	False	NA	0	True	AATAAA	-23	NA	180681011	180664104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_180666673_180669990_180671366_180675712_180675823_180675901_180675947_180679211_180679364_180680784
ENSMUSG00000027580.18_0	chr2	-	1611	4	ISM	ENSMUSG00000027580.18	ENSMUST00000121484.2	10063	18	12377	-4	6168	0	3prime_fragment	FALSE	canonical	0	0	junction_1	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTCTGTTTTGTGGTAT	NA	False	NA	NA	False	TATAAA	-18	NA	180871379	180869407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_180870663_180870747_180870916_180871016_180871174_180871348
ENSMUSG00000027581.13_0	chr2	-	921	5	FSM	ENSMUSG00000027581.13	ENSMUST00000103045.4	1136	5	215	0	215	0	multi-exon	FALSE	canonical	3	148	junction_1	19.0312243431683	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACGTGTGGCTTTTCAT	NA	False	NA	-6	True	AATAAA	-16	NA	180956078	180948251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_180948617_180949008_180949201_180950513_180950690_180950939_180951036_180955986
ENSMUSG00000027581.13_5	chr2	-	821	4	ISM	ENSMUSG00000027581.13	ENSMUST00000103045.4	1136	5	5266	0	5266	0	3prime_fragment	FALSE	canonical	3	148	junction_1	19.3045763140937	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACGTGTGGCTTTTCAT	3665	False	NA	-6	True	AATAAA	-16	NA	180951027	180948251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_180948617_180949008_180949201_180950513_180950690_180950939
ENSMUSG00000027582.17_0	chr2	+	2056	6	FSM	ENSMUSG00000027582.17	ENSMUST00000108807.9	2072	6	18	-2	0	2	multi-exon	FALSE	canonical	3	135	junction_3	10.1074230147946	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTCTCAGTGGAGACTC	NA	False	NA	7	True	ATTAAA	-14	NA	181007215	181022577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167
ENSMUSG00000027582.17_10	chr2	+	3657	11	FSM	ENSMUSG00000027582.17	ENSMUST00000116366.9	3666	11	4	5	4	-3	multi-exon	FALSE	canonical	3	28	junction_6	46.2520269826091	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAAGGTTGGCTCTTGGTT	NA	False	NA	NA	False	ATTAAA	-10	NA	181007219	181025416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181023188_181023986_181024108_181024279_181024338_181024408_181024497_181024591_181024954_181025050
ENSMUSG00000027582.17_3	chr2	+	4427	10	NIC	ENSMUSG00000027582.17	novel	3666	11	NA	NA	4	-3	intron_retention	FALSE	canonical	3	53	junction_7	40.6748625620843	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAAGGTTGGCTCTTGGTT	NA	False	NA	NA	False	ATTAAA	-10	NA	181007248	181025416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181024108_181024279_181024338_181024408_181024497_181024591_181024954_181025050
ENSMUSG00000027582.17_4	chr2	+	4699	8	NIC	ENSMUSG00000027582.17	novel	3666	11	NA	NA	4	-3	intron_retention	FALSE	canonical	3	81	junction_6	30.513295864095	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAAGGTTGGCTCTTGGTT	NA	False	NA	NA	False	ATTAAA	-10	NA	181007219	181025416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181024497_181024591_181024954_181025050
ENSMUSG00000027582.17_50	chr2	+	1667	5	FSM	ENSMUSG00000090077.10	ENSMUST00000048077.12	1959	5	287	5	164	0	multi-exon	FALSE	canonical	3	53	junction_2	13.7386316640341	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAAGGTTGGCTCTTGGTT	9875	False	NA	NA	False	ATTAAA	-10	NA	181023314	181025416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181024108_181024279_181024338_181024408_181024497_181024591_181024954_181025050
ENSMUSG00000027582.17_6	chr2	+	4639	9	NIC	ENSMUSG00000027582.17	novel	3666	11	NA	NA	-7	-3	intron_retention	FALSE	canonical	3	53	junction_6	38.0944549770698	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAAGGTTGGCTCTTGGTT	NA	False	NA	NA	False	ATTAAA	-10	NA	181007208	181025416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181024338_181024408_181024497_181024591_181024954_181025050
ENSMUSG00000027583.14_1	chr2	-	2174	1	ISM	ENSMUSG00000027583.14	ENSMUST00000029106.13	5309	5	69489	2	34451	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGATGCCTCCTGTGTGGT	7573	False	NA	NA	False	AATAAA	-21	NA	181031730	181029556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181029600_181031700
ENSMUSG00000027583.14_2	chr2	-	5308	5	FSM	ENSMUSG00000027583.14	ENSMUST00000029106.13	5309	5	-3	4	-3	-4	multi-exon	FALSE	canonical	3	8	junction_1	10.688779163216	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGATGCCTCCTGTGTG	8535	False	NA	NA	False	AATAAA	-19	NA	181101222	181029558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181033262_181037242_181037419_181053488_181053774_181065211_181066182_181101048
ENSMUSG00000027583.14_3	chr2	-	4287	4	FSM	ENSMUSG00000027583.14	ENSMUST00000180222.8	2014	4	851	-3124	851	0	multi-exon	FALSE	canonical	3	8	junction_1	9.10433352249844	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGCCTCCTGTGTGGTTT	NA	False	NA	NA	False	AATAAA	-23	NA	181065330	181029554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181033262_181037242_181037419_181053488_181053774_181065211
ENSMUSG00000027583.14_5	chr2	-	2580	3	FSM	ENSMUSG00000027583.14	ENSMUST00000087409.10	2577	3	-7	4	-7	-4	multi-exon	FALSE	canonical	3	29	junction_1	2	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGATGTCTGCTCTCTT	8531	False	NA	-6	True	AATAAA	-13	NA	181101226	181052341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181053774_181065211_181066182_181101048
ENSMUSG00000027589.15_1	chr2	+	3506	7	FSM	ENSMUSG00000027589.15	ENSMUST00000029116.14	3569	7	46	17	-13	-2	multi-exon	FALSE	canonical	3	52	junction_6	11.3431330181157	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTATTCTCAGTATTG	NA	False	NA	9	True	AATAAA	-12	NA	181479692	181499237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181479778_181482947_181483132_181484167_181484499_181486188_181486292_181488260_181488433_181493378_181493503_181496730
ENSMUSG00000027589.15_12	chr2	+	2025	1	ISM	ENSMUSG00000027589.15	ENSMUST00000029116.14	3569	7	17566	17	3857	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTATTCTCAGTATTG	20	True	NA	9	True	AATAAA	-12	NA	181497212	181499237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_181497200_181499200
ENSMUSG00000027589.15_20	chr2	+	3075	2	FSM	ENSMUSG00000027589.15	ENSMUST00000137893.2	715	2	-1013	-1347	-408	-594	multi-exon	FALSE	canonical	3	52	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAGGTGGATTGATTGA	NA	False	NA	NA	False	AATAAA	-20	NA	181492342	181498645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181493503_181496730
ENSMUSG00000027589.15_7	chr2	+	3512	7	FSM	ENSMUSG00000027589.15	ENSMUST00000108754.8	3499	7	-13	0	-13	0	multi-exon	FALSE	canonical	2	2	junction_5	27.4028587316482	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTATTCTCAGTATTGCT	NA	False	NA	11	True	AATAAA	-14	NA	181479692	181499239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181479778_181482947_181483132_181484167_181484499_181486188_181486292_181488260_181488433_181493374_181493503_181496730
ENSMUSG00000027593.16_0	chr2	+	1578	10	FSM	ENSMUSG00000027593.16	ENSMUST00000029120.14	1802	10	221	3	0	-3	multi-exon	FALSE	canonical	3	28	junction_4	48.6369772452561	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCTCTGAGGTGGAA	NA	False	NA	3	True	AATAAA	-13	NA	154633273	154709161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027593.16_1	chr2	+	1527	9	FSM	ENSMUSG00000027593.16	ENSMUST00000058089.13	1747	9	200	20	3	-3	multi-exon	FALSE	canonical	3	129	junction_2	14.5945195193264	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCTCTGAGGTGGAA	NA	False	NA	3	True	AATAAA	-13	NA	154633276	154709161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027593.16_14	chr2	+	1253	7	ISM	ENSMUSG00000027593.16	ENSMUST00000058089.13	1747	9	66111	20	65553	-3	3prime_fragment	FALSE	canonical	3	130	junction_4	14.6363322667334	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCTCTGAGGTGGAA	4972	False	NA	3	True	AATAAA	-13	NA	154699187	154709161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027593.16_18	chr2	+	618	3	ISM	ENSMUSG00000027593.16	ENSMUST00000058089.13	1747	9	72672	20	72114	-3	3prime_fragment	FALSE	canonical	3	166	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCTCTGAGGTGGAA	NA	False	NA	3	True	AATAAA	-13	NA	154705748	154709161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_154705970_154707827_154707877_154708813
ENSMUSG00000027593.16_19	chr2	+	219	1	ISM	ENSMUSG00000027593.16	ENSMUST00000109701.10	1709	8	75927	4	75308	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCTCTGAGGTGGAA	NA	False	NA	3	True	AATAAA	-13	NA	154708942	154709161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_154708900_154709200
ENSMUSG00000027593.16_6	chr2	+	1492	9	FSM	ENSMUSG00000027593.16	ENSMUST00000116389.9	1759	9	247	20	3	-3	multi-exon	FALSE	canonical	3	28	junction_3	53.4051437129421	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCTCTGAGGTGGAA	NA	False	NA	3	True	AATAAA	-13	NA	154633276	154709161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027593.16_7	chr2	+	1444	8	FSM	ENSMUSG00000027593.16	ENSMUST00000109701.10	1709	8	261	4	3	-3	multi-exon	FALSE	canonical	3	70	junction_1	30.0557305480255	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCTCTGAGGTGGAA	NA	False	NA	3	True	AATAAA	-13	NA	154633276	154709161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027597.16_0	chr2	-	2498	10	FSM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	41	4	-9	-4	multi-exon	FALSE	canonical	0	0	junction_6	366.363443645113	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCTGGTCTAAGTACCC	NA	False	NA	-12	True	AATAAA	-26	NA	154916376	154901233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
ENSMUSG00000027597.16_1	chr2	-	1536	6	ISM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	9606	422	9556	-422	3prime_fragment	FALSE	canonical	3	939	junction_5	118.53438319745	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAATTTTGGCTCTATTA	NA	False	NA	-62	True	GATAAA	-19	NA	154906811	154901651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733
ENSMUSG00000027597.16_10	chr2	-	1234	4	ISM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	10441	418	10391	-418	3prime_fragment	FALSE	canonical	3	1013	junction_2	85.7943277068284	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTGGCTCTATTAAAAT	NA	False	NA	-58	True	GATAAA	-23	NA	154905976	154901647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908
ENSMUSG00000027597.16_2	chr2	-	486	1	ISM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	14280	422	14230	-422	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAATTTTGGCTCTATTA	NA	False	NA	-62	True	GATAAA	-19	NA	154902137	154901651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_154901700_154902100
ENSMUSG00000027597.16_3	chr2	-	2359	9	ISM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	5517	13	5467	-13	3prime_fragment	FALSE	canonical	0	0	junction_6	378.267576425736	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGGCTAAAAGCTGGTC	NA	False	NA	-21	True	AATAAA	-17	NA	154910900	154901242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747
ENSMUSG00000027597.16_5	chr2	-	3504	9	NIC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-4	-422	intron_retention	FALSE	canonical	0	0	junction_6	385.362309229899	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAATTTTGGCTCTATTA	NA	False	NA	-62	True	GATAAA	-19	NA	154916371	154901651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154910939_154916284
ENSMUSG00000027597.16_7	chr2	-	963	2	ISM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	12235	422	12185	-422	3prime_fragment	FALSE	canonical	3	1080	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAATTTTGGCTCTATTA	NA	False	NA	-62	True	GATAAA	-19	NA	154904182	154901651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_154902501_154904068
ENSMUSG00000027597.16_8	chr2	-	1356	5	ISM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	10238	422	10188	-422	3prime_fragment	FALSE	canonical	3	1013	junction_2	97.2763460456857	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAATTTTGGCTCTATTA	NA	False	NA	-62	True	GATAAA	-19	NA	154906179	154901651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073
ENSMUSG00000027598.17_0	chr2	+	5126	25	FSM	ENSMUSG00000027598.17	ENSMUST00000029126.15	5159	25	22	11	0	-9	multi-exon	FALSE	canonical	3	134	junction_8	21.5151351765836	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAATGAGCATTTGCCT	NA	False	NA	46	True	AATAAA	-6	NA	154975450	155068764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154975506_154980115_154980193_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
ENSMUSG00000027598.17_2	chr2	+	5330	26	FSM	ENSMUSG00000027598.17	ENSMUST00000109685.8	5309	26	-30	9	-2	-9	multi-exon	FALSE	canonical	3	73	junction_2	35.1837689851443	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAATGAGCATTTGCCT	NA	False	NA	46	True	AATAAA	-6	NA	154975448	155068764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154975506_154980115_154980193_154999693_154999896_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
ENSMUSG00000027598.17_44	chr2	+	185	1	ISM	ENSMUSG00000027598.17	ENSMUST00000138468.8	3711	6	43426	13	43389	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAATAATAATGTTTAAAAT	5310	False	NA	NA	False	NA	NA	NA	155018869	155019054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155018900_155019100
ENSMUSG00000027598.17_48	chr2	+	3930	15	ISM	ENSMUSG00000027598.17	ENSMUST00000109685.8	5309	26	51946	6	51944	-6	3prime_fragment	FALSE	canonical	3	176	junction_12	12.8430478295076	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGAGCATTTGCCTTTT	8272	False	NA	49	True	AATAAA	-9	NA	155027424	155068767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
ENSMUSG00000027598.17_60	chr2	+	1767	1	ISM	ENSMUSG00000027598.17	ENSMUST00000029126.15	5159	25	91561	19	91509	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAGAGTAAAATGAGC	NA	False	NA	38	True	NA	NA	NA	155066989	155068756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155067000_155068800
ENSMUSG00000027599.10_0	chr3	-	2926	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	-7	754	-7	-754	multi-exon	TRUE	canonical	3	251	junction_6	16.1761140780679	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAAAATCAAGCAGTTAT	NA	False	NA	-18	True	AATAAA	-8	NA	19217236	19186319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ENSMUSG00000027599.10_1	chr3	-	1554	1	ISM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	29356	754	29356	-754	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAAAATCAAGCAGTTAT	NA	False	NA	-18	True	AATAAA	-8	NA	19187873	19186319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_19186300_19187900
ENSMUSG00000027599.10_2	chr3	-	2900	7	NNC	ENSMUSG00000027599.10	novel	3673	7	NA	NA	-2	-757	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	91.40280204798	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAATGAAAATCAAGCAGT	NA	False	NA	-21	True	AATAAA	-5	NA	19217231	19186322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_19188370_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ENSMUSG00000027601.14_2	chr3	+	2767	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	143	43	-12	-43	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	1334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAGTAAGCTGTTGA	NA	False	NA	7	True	TATAAA	-13	NA	19242416	19274938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ENSMUSG00000027601.14_29	chr3	+	2738	7	ISM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	11914	38	-11548	-38	3prime_fragment	FALSE	canonical	3	975	junction_4	80.6948986409096	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAGCTGTTGAATTTT	NA	False	NA	12	True	TATAAA	-18	NA	19254187	19274943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ENSMUSG00000027602.10_0	chr2	+	957	4	FSM	ENSMUSG00000027602.10	ENSMUST00000029128.4	1112	4	154	1	-92	-1	multi-exon	FALSE	canonical	3	435	junction_1	22.4251842554055	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCCTCCAGCTGCTTG	NA	False	NA	10	True	AATAAA	-22	NA	155118370	155119992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_155118567_155118877_155118934_155119017_155119125_155119394
ENSMUSG00000027602.10_3	chr2	+	812	3	FSM	ENSMUSG00000027602.10	ENSMUST00000154596.2	826	3	16	-2	16	0	multi-exon	FALSE	canonical	3	438	junction_2	23	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTGCCTCCAGCTGCT	NA	False	NA	8	True	AATAAA	-20	NA	155118824	155119990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_155118934_155119017_155119125_155119394
ENSMUSG00000027602.10_4	chr2	+	488	1	ISM	ENSMUSG00000027602.10	ENSMUST00000029128.4	1112	4	1288	1	696	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCCTCCAGCTGCTTG	NA	False	NA	10	True	AATAAA	-22	NA	155119504	155119992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155119500_155120000
ENSMUSG00000027603.16_0	chr2	-	2409	14	ISM	ENSMUSG00000027603.16	ENSMUST00000029131.11	2614	15	8264	8	370	-8	3prime_fragment	FALSE	canonical	2	7	junction_10	4.74933816628712	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGACTCTGGCTTGAT	8971	False	NA	NA	False	ATTAAA	-16	NA	155348504	155332306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_155333037_155335528_155335629_155336765_155336904_155337561_155337680_155337793_155337944_155340682_155340772_155340933_155341062_155342622_155342711_155344555_155344753_155345047_155345122_155345331_155345400_155346623_155346742_155347874_155348027_155348245
ENSMUSG00000027605.19_2	chr2	+	2815	18	FSM	ENSMUSG00000027605.19	ENSMUST00000029135.15	2931	18	106	10	-3	-10	multi-exon	FALSE	canonical	2	49	junction_8	8.02030295659528	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACATAACTGCTTTTTT	2113	False	NA	9	True	AATAAA	-13	NA	155359973	155404656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_155360205_155363900_155364097_155391110_155391203_155391395_155391500_155391718_155391792_155392022_155392099_155392274_155392390_155397773_155397912_155398252_155398424_155398697_155398832_155399016_155399150_155399229_155399287_155399468_155399550_155400510_155400620_155402541_155402611_155402949_155403127_155403665_155403741_155403872
ENSMUSG00000027610.18_0	chr2	-	1869	13	FSM	ENSMUSG00000027610.18	ENSMUST00000079691.13	1963	13	88	6	5	2	multi-exon	FALSE	canonical	3	779	junction_12	109.121491925285	1009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAATGACTCATTGTTTC	8438	False	NA	-8	True	AATAAA	-13	NA	155434642	155405106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
ENSMUSG00000027610.18_5	chr2	-	1840	12	ISM	ENSMUSG00000027610.18	ENSMUST00000079691.13	1963	13	5234	6	0	2	3prime_fragment	FALSE	canonical	3	920	junction_8	92.5996447880662	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAATGACTCATTGTTTC	NA	False	NA	-8	True	AATAAA	-13	NA	155429496	155405106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361
ENSMUSG00000027613.16_0	chr2	-	1252	6	FSM	ENSMUSG00000027613.16	ENSMUST00000029142.15	1500	6	241	7	-21	-2	multi-exon	TRUE	canonical	3	1052	junction_5	244.745255316625	1062	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTCAGTGTGCTGTGTG	NA	False	NA	-10	True	ATTAAA	-15	NA	155668604	155661758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668246
ENSMUSG00000027615.15_0	chr3	-	3346	17	FSM	ENSMUSG00000027615.15	ENSMUST00000108321.2	3385	17	27	12	5	-12	multi-exon	FALSE	canonical	2	2	junction_16	13.1101106021269	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGATGTTCAAATCTGT	NA	False	NA	NA	False	AATAAA	-6	NA	20089439	20050342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_20051194_20056486_20056578_20057388_20057596_20062978_20063087_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084574_20089212
ENSMUSG00000027615.15_1	chr3	-	3744	17	FSM	ENSMUSG00000027615.15	ENSMUST00000012580.13	4016	17	36	236	1	-14	multi-exon	FALSE	canonical	3	23	junction_7	9.33324032691755	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATGATGTTCAAATCT	NA	False	NA	NA	False	AATAAA	-4	NA	20089443	20050344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_20051194_20056486_20056578_20057388_20057596_20062978_20063087_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
ENSMUSG00000027615.15_15	chr3	-	1768	6	ISM	ENSMUSG00000027615.15	ENSMUST00000108321.2	3385	17	23590	14	1218	-14	3prime_fragment	FALSE	canonical	3	43	junction_2	1.46969384566991	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATGATGTTCAAATCT	NA	False	NA	NA	False	AATAAA	-4	NA	20065876	20050344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_20051194_20056486_20056578_20057388_20057596_20062978_20063087_20064963_20065153_20065552
ENSMUSG00000027615.15_23	chr3	-	3762	17	NIC	ENSMUSG00000027615.15	novel	4016	17	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	6	junction_2	13.4395347296698	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAATCTGTCTAATAATTT	NA	False	NA	NA	False	AATAAA	-16	NA	20089445	20050332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_20051194_20056486_20056582_20057388_20057596_20062978_20063087_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
ENSMUSG00000027615.15_4	chr3	-	3667	16	NIC	ENSMUSG00000027615.15	novel	4016	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	6	junction_3	13.8490272422129	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGTCTAATAATTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	20089460	20050330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_20051194_20056486_20056578_20057388_20057596_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
ENSMUSG00000027615.15_41	chr3	-	2760	10	FSM	ENSMUSG00000027615.15	ENSMUST00000137408.8	3395	10	14	621	0	-621	multi-exon	FALSE	canonical	3	37	junction_6	8.31330927555995	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGGTATATCTTTTTCA	NA	False	NA	NA	False	ATTAAA	-19	NA	20089444	20067307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
ENSMUSG00000027618.18_0	chr2	-	2011	13	FSM	ENSMUSG00000027618.18	ENSMUST00000029147.16	2051	13	21	19	-12	-8	multi-exon	TRUE	canonical	3	228	junction_1	23.0952135493242	321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCCCATTTCCTGTCCT	3127	False	NA	-21	True	ATTAAA	-12	NA	155986085	155965577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
ENSMUSG00000027620.17_0	chr2	-	2717	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	-14	8	3	-8	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGCCACAAGAAAATT	NA	False	NA	NA	False	AATAAA	-9	NA	156022101	155989176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUSG00000027620.17_10	chr2	-	2727	17	NIC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	198	junction_12	654.785291025806	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGCCACAAGAAAATT	NA	False	NA	NA	False	AATAAA	-9	NA	156022096	155989176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009509_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUSG00000027620.17_2	chr2	-	2735	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	57	18	3	-8	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	1118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGCCACAAGAAAATT	NA	False	NA	NA	False	AATAAA	-9	NA	156022101	155989176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUSG00000027620.17_3	chr2	-	2790	18	NIC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	3	-8	combination_of_known_junctions	FALSE	canonical	3	383	junction_15	737.860411025805	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGCCACAAGAAAATT	NA	False	NA	NA	False	AATAAA	-9	NA	156022101	155989176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
ENSMUSG00000027620.17_5	chr2	-	2808	18	FSM	ENSMUSG00000027620.17	ENSMUST00000155837.8	2120	18	-5	-683	3	-8	multi-exon	FALSE	canonical	3	383	junction_15	717.627699835322	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGCCACAAGAAAATT	NA	False	NA	NA	False	AATAAA	-9	NA	156022101	155989176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
ENSMUSG00000027624.21_10	chr2	+	3517	21	NIC	ENSMUSG00000027624.21	novel	6251	22	NA	NA	9	851	combination_of_known_junctions	FALSE	canonical	3	98	junction_12	20.7663188841932	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCCAAGTTATAATTACC	7793	False	NA	16	True	AATAAA	-26	NA	156262980	156382757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
ENSMUSG00000027624.21_13	chr2	+	3513	21	FSM	ENSMUSG00000027624.21	ENSMUST00000109574.8	5904	21	12	2379	8	849	multi-exon	FALSE	canonical	3	16	junction_12	32.516303602962	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTCCAAGTTATAATTA	7792	False	NA	14	True	AATAAA	-24	NA	156262979	156382755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352655_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
ENSMUSG00000027624.21_15	chr2	+	3922	22	FSM	ENSMUSG00000027624.21	ENSMUST00000109577.9	6251	22	-51	2380	9	848	multi-exon	FALSE	canonical	3	36	junction_14	33.5816600417023	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATTTCCAAGTTATAATT	7793	False	NA	13	True	AATAAA	-23	NA	156262980	156382754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156366800_156367209_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
ENSMUSG00000027624.21_21	chr2	+	3482	21	NIC	ENSMUSG00000027624.21	novel	5904	21	NA	NA	9	840	combination_of_known_junctions	FALSE	canonical	3	23	junction_12	31.2878171178496	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAGCTGACATTTCCAAG	7793	False	NA	5	True	AATAAA	-15	NA	156262980	156382746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352676_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
ENSMUSG00000027624.21_22	chr2	+	5924	22	NIC	ENSMUSG00000027624.21	novel	6490	23	NA	NA	9	-4	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	40.1842694372323	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAACCATGGACTCCCTC	7793	False	NA	7	True	AATAAA	-22	NA	156262980	156385128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156353704_156353741_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
ENSMUSG00000027624.21_66	chr2	+	2594	1	ISM	ENSMUSG00000027624.21	ENSMUST00000103137.10	6490	23	119708	4	7110	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCATGGACTCCCTCAG	NA	False	NA	9	True	AATAAA	-24	NA	156382536	156385130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_156382500_156385100
ENSMUSG00000027628.11_0	chr2	+	2604	4	FSM	ENSMUSG00000027628.11	ENSMUST00000029158.4	3427	4	4	819	4	-3	multi-exon	FALSE	canonical	3	133	junction_3	2.16024689946929	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATCCCCCTGTGTGAGT	NA	False	NA	4	True	ATTAAA	-15	NA	156389519	156410073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156389804_156392568_156393370_156397746_156397977_156408784
ENSMUSG00000027628.11_2	chr2	+	2780	5	NIC	ENSMUSG00000027628.11	novel	2766	5	NA	NA	4	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	64.3481740222673	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATCCCCCTGTGTGAGT	NA	False	NA	4	True	ATTAAA	-15	NA	156389519	156410073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_156389804_156391771_156391948_156392568_156393370_156397746_156397977_156408784
ENSMUSG00000027628.11_3	chr2	+	2748	5	FSM	ENSMUSG00000027628.11	ENSMUST00000109570.8	2766	5	15	3	3	-3	multi-exon	FALSE	canonical	0	0	junction_2	64.1190299365173	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATCCCCCTGTGTGAGT	NA	False	NA	4	True	ATTAAA	-15	NA	156389518	156410073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156389804_156391804_156391948_156392568_156393370_156397746_156397977_156408784
ENSMUSG00000027628.11_5	chr2	+	2190	3	ISM	ENSMUSG00000027628.11	ENSMUST00000109570.8	2766	5	3195	3	3155	-3	3prime_fragment	FALSE	canonical	3	133	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATCCCCCTGTGTGAGT	NA	False	NA	4	True	ATTAAA	-15	NA	156392698	156410073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_156393370_156397746_156397977_156408784
ENSMUSG00000027630.14_0	chr3	+	6775	16	FSM	ENSMUSG00000027630.14	ENSMUST00000202747.4	4209	16	-30	-2536	-30	-6	multi-exon	TRUE	canonical	3	160	junction_1	26.4420540469575	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGTTGGCTGTGTAC	NA	False	NA	11	True	AATAAA	-11	NA	22130860	22269451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_22131119_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
ENSMUSG00000027630.14_2	chr3	+	6839	17	NIC	ENSMUSG00000027630.14	novel	8237	17	NA	NA	-13	-6	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	65.5017890977033	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGTTGGCTGTGTAC	NA	False	NA	11	True	AATAAA	-11	NA	22130877	22269451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_22131119_22157030_22157112_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
ENSMUSG00000027630.14_4	chr3	+	6884	17	FSM	ENSMUSG00000027630.14	ENSMUST00000193734.6	8237	17	46	1307	-29	-6	multi-exon	FALSE	canonical	3	32	junction_2	67.0932187333414	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGTTGGCTGTGTAC	NA	False	NA	11	True	AATAAA	-11	NA	22130861	22269451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_22131119_22143576_22143687_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
ENSMUSG00000027630.14_49	chr3	+	3144	1	ISM	ENSMUSG00000027630.14	ENSMUST00000193734.6	8237	17	135497	1302	8957	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTGGCTGTGTACATATA	NA	False	NA	16	True	AATAAA	-16	NA	22266312	22269456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_22266300_22269500
ENSMUSG00000027634.15_0	chr2	-	2590	16	FSM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	-5	1	-5	-1	multi-exon	FALSE	canonical	3	138	junction_4	17.2644786258439	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGCTGCTGGTGTTATT	5909	False	NA	-1	True	AATAAA	-21	NA	156833981	156769265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
ENSMUSG00000027634.15_2	chr2	-	2714	16	NIC	ENSMUSG00000027634.15	novel	2586	16	NA	NA	-21	-1	combination_of_known_junctions	FALSE	canonical	3	4	junction_15	44.4400220021948	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGCTGCTGGTGTTATT	6022	False	NA	-1	True	AATAAA	-21	NA	156833868	156769265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833681
ENSMUSG00000027634.15_3	chr2	-	1002	1	ISM	ENSMUSG00000027634.15	ENSMUST00000069600.13	2612	17	63694	3	6656	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCCGGCTGCTGGTGTTA	NA	False	NA	-3	True	AATAAA	-19	NA	156770269	156769267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_156769300_156770300
ENSMUSG00000027634.15_4	chr2	-	2615	17	FSM	ENSMUSG00000027634.15	ENSMUST00000069600.13	2612	17	-4	1	0	-1	multi-exon	FALSE	canonical	3	9	junction_1	53.8324948335111	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGCTGCTGGTGTTATT	5923	False	NA	-1	True	AATAAA	-21	NA	156833967	156769265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156770802_156771851_156771891_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
ENSMUSG00000027634.15_7	chr2	-	2548	15	NIC	ENSMUSG00000027634.15	novel	2586	16	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	12	junction_13	42.7715812574811	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGCTGCTGGTGTTATT	5915	False	NA	-1	True	AATAAA	-21	NA	156833975	156769265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156811956_156812059_156833918
ENSMUSG00000027635.16_0	chr2	-	2072	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	9	-1	9	1	multi-exon	FALSE	canonical	3	138	junction_10	28.450131809888	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTATGTGACAGTGTGTC	8143	False	NA	-5	True	AATAAA	-31	NA	156848986	156837183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
ENSMUSG00000027635.16_1	chr2	-	2540	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103130.8	2636	11	95	1	16	-1	multi-exon	FALSE	canonical	3	12	junction_10	60.8885046622103	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTTGAAGTGTACACTA	8150	False	NA	-19	True	AATAAA	-17	NA	156848979	156837197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156848283_156848894
ENSMUSG00000027635.16_2	chr2	-	2956	10	ISM	ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	224	1	179	-1	3prime_fragment	FALSE	canonical	3	171	junction_9	21.9027029168029	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACACTATGTGACAGTGTG	8358	False	NA	-7	True	AATAAA	-29	NA	156848771	156837185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767
ENSMUSG00000027635.16_3	chr2	-	3494	9	ISM	ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	31	12	-14	0	intron_retention	FALSE	canonical	3	177	junction_5	19.9421037004625	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTGAAGTGTACACTAT	8165	False	NA	-18	True	AATAAA	-18	NA	156848964	156837196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087
ENSMUSG00000027637.4_0	chr2	+	1029	4	FSM	ENSMUSG00000027637.4	ENSMUST00000029165.4	1045	4	11	5	0	-5	multi-exon	FALSE	canonical	3	1149	junction_1	99.8031395631754	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTGTGTTGGCATGCC	4653	False	NA	9	True	AATAAA	-13	NA	156705058	156715478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156705338_156707176_156707281_156714257_156714388_156714962
ENSMUSG00000027637.4_1	chr2	+	926	3	FSM	ENSMUSG00000027637.4	ENSMUST00000152551.2	765	3	0	-161	0	-4	multi-exon	FALSE	canonical	3	93	junction_1	636.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTGTGTTGGCATGCCT	4653	False	NA	10	True	AATAAA	-14	NA	156705058	156715479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156705338_156714257_156714388_156714962
ENSMUSG00000027639.17_0	chr2	-	1921	16	FSM	ENSMUSG00000027639.17	ENSMUST00000057725.10	3926	16	137	1868	-8	0	multi-exon	FALSE	canonical	3	122	junction_1	26.3435423248701	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAATATCTGCGGTTAG	NA	False	NA	-5	True	AGTAAA	-18	NA	156977048	156941320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
ENSMUSG00000027639.17_24	chr2	-	1554	7	FSM	ENSMUSG00000027639.17	ENSMUST00000149313.8	1375	7	-177	-2	6	2	multi-exon	FALSE	canonical	1	2	junction_1	78.9887474405198	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGTGTTGTTTTTATTC	NA	False	NA	NA	False	AATAAA	-13	NA	156977034	156961481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156962312_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
ENSMUSG00000027639.17_5	chr2	-	2043	17	FSM	ENSMUSG00000027639.17	ENSMUST00000139263.8	2036	17	-7	0	-7	0	multi-exon	FALSE	canonical	3	34	junction_1	54.3495630157226	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAATATCTGCGGTTAG	NA	False	NA	-5	True	AGTAAA	-18	NA	156977047	156941320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156941424_156943240_156943364_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
ENSMUSG00000027641.14_0	chr2	-	1194	1	ISM	ENSMUSG00000027641.14	ENSMUST00000029170.8	4862	22	57416	10	45287	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTAAACTATTGTACT	3054	False	NA	NA	False	NA	NA	NA	156989016	156987822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_156987800_156989000
ENSMUSG00000027641.14_18	chr2	-	2306	15	ISM	ENSMUSG00000027641.14	ENSMUST00000154721.8	2715	16	9	2820	1	-2820	5prime_fragment	FALSE	canonical	3	55	junction_2	35.4011991034087	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACATGATATAACTCTGT	NA	False	NA	NA	False	CATAAA	-28	NA	157046445	157011717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_157012051_157016694_157016828_157017447_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
ENSMUSG00000027641.14_2	chr2	-	2806	2	ISM	ENSMUSG00000027641.14	ENSMUST00000029170.8	4862	22	52812	10	40683	-10	3prime_fragment	FALSE	canonical	3	54	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTAAACTATTGTACT	NA	False	NA	NA	False	NA	NA	NA	156993620	156987822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_156989597_156992588
ENSMUSG00000027641.14_22	chr2	-	2380	13	FSM	ENSMUSG00000027641.14	ENSMUST00000124518.2	2383	13	3	0	3	0	multi-exon	FALSE	canonical	3	92	junction_1	21.3559450478992	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGGACTTGTATACATGT	NA	False	NA	-6	True	NA	NA	NA	157046443	157016905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
ENSMUSG00000027641.14_4	chr2	-	4864	22	FSM	ENSMUSG00000027641.14	ENSMUST00000029170.8	4862	22	-12	10	2	-10	multi-exon	TRUE	canonical	3	54	junction_1	43.0171615808876	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTAAACTATTGTACT	NA	False	NA	NA	False	NA	NA	NA	157046444	156987822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156989597_156992588_156992754_156994815_156994965_157001579_157001659_157003299_157003372_157005458_157005636_157009154_157009367_157011786_157012051_157016694_157016828_157017447_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
ENSMUSG00000027642.16_0	chr2	+	2276	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	217	263	130	0	multi-exon	TRUE	canonical	3	1870	junction_1	194.730412606121	3520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGATGGAGCCTTGCA	NA	False	NA	17	True	AATAAA	-18	NA	157121195	157167976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
ENSMUSG00000027642.16_84	chr2	+	2215	16	ISM	ENSMUSG00000027642.16	ENSMUST00000127252.8	2314	17	4157	2	0	-2	3prime_fragment	FALSE	canonical	3	2037	junction_7	165.421831153636	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTTGATGGAGCCTTG	NA	False	NA	15	True	AATAAA	-16	NA	157125502	157167974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
ENSMUSG00000027646.16_17	chr2	+	3881	14	FSM	ENSMUSG00000027646.16	ENSMUST00000029175.14	3906	14	-2	27	-2	0	multi-exon	FALSE	canonical	3	53	junction_1	27.1024791983727	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGGTCAGCAGTTTA	NA	False	NA	7	True	ATTAAA	-13	NA	157266197	157313755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_157266335_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ENSMUSG00000027646.16_18	chr2	+	3803	13	NIC	ENSMUSG00000027646.16	novel	3906	14	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	40.2881978858435	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGGTCAGCAGTTTA	NA	False	NA	7	True	ATTAAA	-13	NA	157266198	157313755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_157266335_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ENSMUSG00000027646.16_38	chr2	+	3603	12	ISM	ENSMUSG00000027646.16	ENSMUST00000029175.14	3906	14	31372	30	-19	-3	3prime_fragment	FALSE	canonical	3	126	junction_1	12.2501475788041	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCAGTTTGGTCAGCAGT	NA	False	NA	4	True	ATTAAA	-10	NA	157297571	157313752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ENSMUSG00000027646.16_39	chr2	+	3467	11	ISM	ENSMUSG00000027646.16	ENSMUST00000109531.8	3586	12	1429	3	15	0	3prime_fragment	FALSE	canonical	3	131	junction_4	11.2964596223773	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGGTCAGCAGTTTA	NA	False	NA	7	True	ATTAAA	-13	NA	157299019	157313755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ENSMUSG00000027646.16_47	chr2	+	2355	3	ISM	ENSMUSG00000027646.16	ENSMUST00000109531.8	3586	12	13470	1	12056	-1	3prime_fragment	FALSE	canonical	3	144	junction_1	12.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGGTCAGCAGTTTATT	NA	False	NA	9	True	ATTAAA	-15	NA	157311060	157313757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_157311199_157311309_157311442_157311672
ENSMUSG00000027646.16_49	chr2	+	1219	1	ISM	ENSMUSG00000027646.16	ENSMUST00000029175.14	3906	14	46339	25	13534	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGGTCAGCAGTTTATT	NA	False	NA	9	True	ATTAAA	-15	NA	157312538	157313757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_157312500_157313800
ENSMUSG00000027646.16_5	chr2	+	3976	15	NNC	ENSMUSG00000027646.16	novel	3586	12	NA	NA	2244	-1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	44.3039133112852	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGGTCAGCAGTTTATT	NA	False	NA	9	True	ATTAAA	-15	NA	157262607	157313757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_157262723_157263520_157263636_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ENSMUSG00000027646.16_6	chr2	+	3873	14	NNC	ENSMUSG00000027646.16	novel	3586	12	NA	NA	2232	-1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	38.5845724450749	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGGTCAGCAGTTTATT	NA	False	NA	9	True	ATTAAA	-15	NA	157262595	157313757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_157262723_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
ENSMUSG00000027649.16_0	chr2	+	1856	16	FSM	ENSMUSG00000027649.16	ENSMUST00000029178.7	2442	16	62	524	62	-524	multi-exon	FALSE	canonical	3	501	junction_9	43.3601968015214	599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGGGGCTGACATTGTA	NA	False	NA	13	True	ATTAAA	-13	NA	157579382	157733010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_157579480_157616330_157616520_157621731_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661523_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
ENSMUSG00000027650.13_0	chr2	-	3796	8	FSM	ENSMUSG00000027650.13	ENSMUST00000029179.11	3830	8	25	9	25	0	multi-exon	FALSE	canonical	3	173	junction_3	12.5746749055231	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTCTTGATGAGAGA	NA	False	NA	-17	True	NA	NA	NA	157870328	157823731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_157824381_157834887_157834976_157835273_157835479_157837300_157837442_157838996_157839146_157842539_157842729_157848938_157851279_157870293
ENSMUSG00000027650.13_4	chr2	-	2959	7	FSM	ENSMUSG00000027650.13	ENSMUST00000109522.2	3765	7	806	0	806	0	multi-exon	FALSE	canonical	3	173	junction_3	11.8977121983832	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTCTTGATGAGAGA	NA	False	NA	-17	True	NA	NA	NA	157850476	157823731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_157824381_157834887_157834976_157835273_157835479_157837300_157837442_157838996_157839146_157842539_157842729_157848938
ENSMUSG00000027650.13_5	chr2	-	5618	7	NIC	ENSMUSG00000027650.13	novel	3830	8	NA	NA	25	0	intron_retention	FALSE	canonical	3	176	junction_6	11.066716867356	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTCTTGATGAGAGA	NA	False	NA	-17	True	NA	NA	NA	157870328	157823731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_157824381_157834887_157834976_157835273_157837442_157838996_157839146_157842539_157842729_157848938_157851279_157870293
ENSMUSG00000027651.17_0	chr2	+	3604	7	FSM	ENSMUSG00000027651.17	ENSMUST00000029180.14	4283	7	-215	894	-2	-894	multi-exon	FALSE	canonical	3	131	junction_3	20.3749573960018	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACATTCTGTGATGTTT	NA	False	NA	3	True	AATAAA	-14	NA	157870425	157919233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889835_157889949_157892006_157892134_157900571_157900748_157916849
ENSMUSG00000027651.17_1	chr2	+	3589	7	FSM	ENSMUSG00000027651.17	ENSMUST00000103123.10	4504	7	21	894	10	-894	multi-exon	FALSE	canonical	3	106	junction_3	28.7807806241133	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACATTCTGTGATGTTT	NA	False	NA	3	True	AATAAA	-14	NA	157870437	157919233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889838_157889949_157892006_157892134_157900571_157900748_157916849
ENSMUSG00000027651.17_23	chr2	+	1825	1	ISM	ENSMUSG00000027651.17	ENSMUST00000103123.10	4504	7	46992	894	27530	-894	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACATTCTGTGATGTTT	2732	False	NA	3	True	AATAAA	-14	NA	157917408	157919233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_157917400_157919200
ENSMUSG00000027651.17_5	chr2	+	3493	6	NIC	ENSMUSG00000027651.17	novel	4283	7	NA	NA	-10	-894	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	65.3452370108182	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACATTCTGTGATGTTT	NA	False	NA	3	True	AATAAA	-14	NA	157870406	157919233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_157870966_157885325_157885460_157889835_157889949_157892006_157892134_157900571_157900748_157916849
ENSMUSG00000027651.17_8	chr2	+	3700	8	FSM	ENSMUSG00000027651.17	ENSMUST00000109518.8	4399	8	-195	894	-2	-894	multi-exon	FALSE	canonical	2	5	junction_6	76.3520310997764	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACATTCTGTGATGTTT	NA	False	NA	3	True	AATAAA	-14	NA	157870425	157919233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889835_157889949_157892006_157892134_157900571_157900748_157912480_157912577_157916849
ENSMUSG00000027652.16_0	chr2	+	5307	30	FSM	ENSMUSG00000027652.16	ENSMUST00000109486.9	8383	30	34	3042	0	-1435	multi-exon	FALSE	canonical	3	76	junction_9	18.0033026432432	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGTCCCTCTGATC	NA	False	NA	NA	False	ATTAAA	-28	NA	158251801	158338131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_158252024_158262733_158262950_158268084_158268288_158272336_158272501_158274653_158274841_158277377_158277510_158278409_158278589_158278922_158279072_158279179_158279397_158282689_158282892_158285157_158285326_158285746_158285862_158286492_158286641_158288048_158288114_158290239_158290370_158292096_158292231_158296043_158296227_158298370_158298523_158303990_158304179_158305991_158306099_158307738_158307892_158308655_158308866_158315042_158315202_158318024_158318191_158319560_158319684_158324284_158324422_158334283_158334393_158334854_158334934_158336544_158336694_158337370
ENSMUSG00000027652.16_34	chr2	+	3312	14	ISM	ENSMUSG00000027652.16	ENSMUST00000141497.2	7131	25	17599	2377	-11742	-770	3prime_fragment	FALSE	canonical	3	86	junction_10	18.1551498879966	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGGACTCCAGTGATTG	NA	False	NA	4	True	ATTAAA	-6	NA	158296072	158338796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_158296227_158298370_158298523_158303990_158304179_158305991_158306099_158307738_158307892_158308655_158308866_158315042_158315202_158318024_158318191_158319560_158319684_158324284_158324422_158334283_158334393_158334854_158334934_158336544_158336694_158337370
ENSMUSG00000027652.16_38	chr2	+	2037	6	ISM	ENSMUSG00000027652.16	ENSMUST00000141497.2	7131	25	41085	2365	-90	-758	3prime_fragment	FALSE	canonical	3	86	junction_2	21.8357505023299	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGATTGGTTTGAGGTTTC	6282	False	NA	16	True	ATTAAA	-18	NA	158319558	158338808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_158319684_158324284_158324422_158334283_158334393_158334854_158334934_158336544_158336694_158337370
ENSMUSG00000027652.16_45	chr2	+	2747	1	ISM	ENSMUSG00000027652.16	ENSMUST00000109486.9	8383	30	86650	9	18769	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAATAACTTGGTGTGTG	NA	False	NA	20	True	ATTAAA	-17	NA	158338417	158341164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_158338400_158341200
ENSMUSG00000027652.16_7	chr2	+	5295	30	FSM	ENSMUSG00000027652.16	ENSMUST00000046274.12	8366	30	28	3043	-1	-1436	multi-exon	FALSE	canonical	3	25	junction_15	22.7822239150626	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAAGTTGTCCCTCTGAT	NA	False	NA	NA	False	ATTAAA	-27	NA	158251800	158338130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_158252024_158262733_158262950_158268084_158268288_158272336_158272501_158274653_158274841_158277377_158277510_158278409_158278589_158278922_158279072_158279179_158279397_158282689_158282892_158285157_158285326_158285746_158285862_158286492_158286641_158288048_158288114_158290239_158290370_158292108_158292231_158296043_158296227_158298370_158298523_158303990_158304179_158305991_158306099_158307738_158307892_158308655_158308866_158315042_158315202_158318024_158318191_158319560_158319684_158324284_158324422_158334283_158334393_158334854_158334934_158336544_158336694_158337370
ENSMUSG00000027654.3_0	chr2	+	2260	4	FSM	ENSMUSG00000027654.3	ENSMUST00000029183.3	2266	4	1	5	1	-5	multi-exon	FALSE	canonical	3	282	junction_3	16.3571255285137	463	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTATTTGTGTGATTCTTT	407	False	NA	3	True	AATAAA	-11	NA	158610013	158628552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_158610508_158621764_158621933_158625052_158625178_158627079
ENSMUSG00000027655.15_1	chr2	+	3221	22	FSM	ENSMUSG00000027655.15	ENSMUST00000109478.9	3284	22	58	5	0	-5	multi-exon	FALSE	canonical	3	62	junction_9	12.5862106454921	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGACATGTTTCTCCTGTC	NA	False	NA	23	True	AGTAAA	-14	NA	158636784	158700129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_158636849_158643294_158643429_158648317_158648411_158648842_158648921_158657349_158657455_158659282_158659345_158660181_158660252_158662305_158662366_158668224_158668338_158669822_158669920_158671422_158671582_158673581_158673793_158676789_158676915_158678560_158678616_158682470_158682567_158684224_158684320_158684775_158684854_158685997_158686128_158688827_158688910_158691401_158691474_158693630_158693743_158698999
ENSMUSG00000027655.15_40	chr2	+	1091	1	ISM	ENSMUSG00000027655.15	ENSMUST00000029186.14	3212	21	62315	2	6493	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATGTTTCTCCTGTCTGT	NA	False	NA	26	True	AGTAAA	-17	NA	158699041	158700132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_158699000_158700100
ENSMUSG00000027655.15_7	chr2	+	3241	22	FSM	ENSMUSG00000027655.15	ENSMUST00000145692.8	3249	22	2	6	-1	-6	multi-exon	TRUE	canonical	3	5	junction_4	22.9958095364314	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGACATGTTTCTCCTGT	NA	False	NA	22	True	AGTAAA	-13	NA	158636783	158700128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_158636849_158643294_158643429_158648317_158648411_158648842_158648921_158657329_158657455_158659282_158659345_158660181_158660252_158662305_158662366_158668224_158668338_158669822_158669920_158671422_158671582_158673581_158673793_158676789_158676915_158678560_158678616_158682470_158682567_158684224_158684320_158684775_158684854_158685997_158686128_158688827_158688910_158691401_158691474_158693630_158693743_158698999
ENSMUSG00000027660.17_13	chr3	+	4261	2	ISM	ENSMUSG00000027660.17	ENSMUST00000118470.8	6578	7	22396	2	20621	-2	3prime_fragment	FALSE	canonical	3	81	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGTTTGGTTCAAGTC	7719	False	NA	12	True	AATAAA	-14	NA	31171602	31176720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_31171747_31172603
ENSMUSG00000027660.17_14	chr3	+	3050	1	ISM	ENSMUSG00000027660.17	ENSMUST00000118470.8	6578	7	24464	2	22689	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGTTTGGTTCAAGTC	9787	False	NA	12	True	AATAAA	-14	NA	31173670	31176720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_31173700_31176700
ENSMUSG00000027660.17_2	chr3	+	6629	7	FSM	ENSMUSG00000027660.17	ENSMUST00000118470.8	6578	7	-53	2	-53	-2	multi-exon	FALSE	canonical	0	0	junction_2	38.1113135725105	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGTTTGGTTCAAGTC	NA	False	NA	12	True	AATAAA	-14	NA	31149153	31176720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_31149307_31150851_31152569_31165773_31165872_31167556_31167652_31170964_31171189_31171521_31171747_31172603
ENSMUSG00000027660.17_3	chr3	+	6717	7	FSM	ENSMUSG00000027660.17	ENSMUST00000029194.12	6717	7	-6	6	-3	-2	multi-exon	FALSE	canonical	0	0	junction_2	41.5668805126817	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGTTTGGTTCAAGTC	NA	False	NA	12	True	AATAAA	-14	NA	31149203	31176720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_31149307_31150851_31152569_31165773_31165872_31167556_31167790_31170964_31171189_31171521_31171747_31172603
ENSMUSG00000027660.17_7	chr3	+	5382	6	ISM	ENSMUSG00000027660.17	ENSMUST00000118470.8	6578	7	2739	2	964	-2	3prime_fragment	FALSE	canonical	0	0	junction_1	40.2223818290265	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGTTTGGTTCAAGTC	1974	False	NA	12	True	AATAAA	-14	NA	31151945	31176720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_31152569_31165773_31165872_31167556_31167652_31170964_31171189_31171521_31171747_31172603
ENSMUSG00000027660.17_9	chr3	+	5176	6	FSM	ENSMUSG00000027660.17	ENSMUST00000118204.2	2904	6	1308	-3580	1308	-2	multi-exon	FALSE	canonical	0	0	junction_1	43.1249347825594	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGTTTGGTTCAAGTC	2318	False	NA	12	True	AATAAA	-14	NA	31152289	31176720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_31152569_31165773_31165872_31167556_31167790_31170964_31171189_31171521_31171747_31172603
ENSMUSG00000027661.5_2	chr2	+	3418	5	FSM	ENSMUSG00000027661.5	ENSMUST00000029196.5	3544	5	118	8	118	-8	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACGCATATGGTGATTT	NA	False	NA	NA	False	AATAAA	-12	NA	165345824	165361829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_165345969_165356345_165357618_165358152_165358276_165359536_165359673_165360086
ENSMUSG00000027663.13_0	chr3	-	3114	1	ISM	ENSMUSG00000027663.13	ENSMUST00000029199.11	7797	6	27767	6	27549	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGCGTTCGGTTCTGA	6161	False	NA	-6	True	AATAAA	-20	NA	32392060	32388946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_32388900_32392100
ENSMUSG00000027663.13_2	chr3	-	2367	6	FSM	ENSMUSG00000027663.13	ENSMUST00000029199.11	7797	6	-5	5435	-5	-5431	multi-exon	FALSE	canonical	3	71	junction_5	21.7568380055559	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGACTGATGGAGTGTT	NA	False	NA	-28	True	AATAAA	-19	NA	32419832	32394375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419652
ENSMUSG00000027663.13_4	chr3	-	2233	6	NIC	ENSMUSG00000027663.13	novel	7797	6	NA	NA	249	-5431	intron_retention	FALSE	canonical	3	21	junction_5	41.5855744219074	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGACTGATGGAGTGTT	NA	False	NA	-28	True	AATAAA	-19	NA	32419360	32394375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419314
ENSMUSG00000027665.14_0	chr3	+	4500	21	NNC	ENSMUSG00000027665.14	novel	8917	20	NA	NA	-455	943	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_2	13.8524366087703	182	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTATCATTAATATATAT	NA	False	NA	NA	False	ATTAAA	-40	NA	32451364	32517920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_32451642_32490278_32490707_32491266_32491477_32491965_32492217_32493852_32494099_32494775_32494862_32496874_32496981_32497727_32497881_32497963_32498099_32502103_32502229_32503671_32503754_32504057_32504223_32504410_32504515_32505904_32506077_32508009_32508117_32508527_32508650_32510241_32510321_32514010_32514182_32515628_32515747_32515845_32515998_32516709
ENSMUSG00000027665.14_1	chr3	+	4257	16	NNC	ENSMUSG00000027665.14	novel	8917	20	NA	NA	-447	-6832	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_2	14.0117411084022	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTCTTATGAGTTATCT	NA	False	NA	NA	False	ATTAAA	-13	NA	32451372	32510145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_32451642_32490278_32490707_32491266_32491477_32491965_32492217_32493852_32494099_32494775_32494862_32496874_32496981_32497727_32497881_32497963_32498099_32502103_32502229_32503671_32503754_32504057_32504223_32504410_32504515_32505904_32506077_32508009_32508117_32508527
ENSMUSG00000027665.14_30	chr3	+	2564	1	ISM	ENSMUSG00000027665.14	ENSMUST00000108243.8	6689	21	65855	18	1849	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTATTTTGTGTAAAGT	6972	False	NA	77	True	AAAACA	-9	NA	32517674	32520238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_32517700_32520200
ENSMUSG00000027667.14_1	chr3	+	1803	7	FSM	ENSMUSG00000027667.14	ENSMUST00000193287.6	2211	7	313	95	37	-5	multi-exon	FALSE	canonical	3	56	junction_1	65.8012580089131	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGGGCAAGCTGAAAT	3219	False	NA	17	True	AATAAA	-17	NA	32564720	32574887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_32564739_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUSG00000027667.14_10	chr3	+	1893	7	NNC	ENSMUSG00000027667.14	novel	1988	7	NA	NA	-47	-5	intron_retention	FALSE	canonical	3	23	junction_1	77.7488835218159	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGGGCAAGCTGAAAT	3264	False	NA	17	True	AATAAA	-17	NA	32564765	32574887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_32564882_32567157_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUSG00000027667.14_7	chr3	+	1890	7	FSM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	92	6	-37	-6	multi-exon	FALSE	canonical	3	110	junction_1	46.6455309280059	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATGGGCAAGCTGAAA	3274	False	NA	16	True	AATAAA	-16	NA	32564775	32574886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUSG00000027667.14_8	chr3	+	1786	6	ISM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	2465	5	0	-5	3prime_fragment	FALSE	canonical	3	192	junction_2	18.5752523536021	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGGGCAAGCTGAAAT	5647	False	NA	17	True	AATAAA	-17	NA	32567148	32574887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUSG00000027668.14_0	chr3	+	2967	18	FSM	ENSMUSG00000027668.14	ENSMUST00000091257.11	4562	18	32	1563	32	323	multi-exon	FALSE	canonical	3	429	junction_6	42.8432404539521	1011	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACGAGGCCTATCATTGTA	NA	False	NA	19	True	ATTAAA	-16	NA	32583645	32631825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_32583845_32586046_32586166_32588386_32588523_32592418_32592582_32596954_32597080_32598215_32598325_32600736_32600845_32608303_32608458_32609622_32609691_32615613_32615736_32617160_32617288_32617523_32617629_32617941_32618045_32618224_32618455_32622405_32622559_32623636_32623834_32628382_32628518_32631211
ENSMUSG00000027669.15_0	chr3	-	3906	1	ISM	ENSMUSG00000027669.15	ENSMUST00000155737.8	5997	10	32345	3	13938	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCACTGTACCTTGTT	NA	False	NA	NA	False	AATAAA	-13	NA	32638389	32634483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_32634500_32638400
ENSMUSG00000027669.15_1	chr3	-	2271	10	FSM	ENSMUSG00000027669.15	ENSMUST00000155737.8	5997	10	60	3666	0	0	multi-exon	TRUE	canonical	3	60	junction_8	7.61253028131584	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTTACTTTTCCATTTT	NA	False	NA	-2	True	TATAAA	-16	NA	32670674	32638146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_32639376_32641709_32641927_32643857_32644060_32644145_32644213_32645259_32645423_32647306_32647371_32650425_32650533_32652274_32652314_32656193_32656290_32670587
ENSMUSG00000027671.15_0	chr3	+	1791	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	215	4	-43	1	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	1477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCGTGCTGGATTTGTC	NA	False	NA	19	True	AATAAA	-16	NA	32762870	32781118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
ENSMUSG00000027673.13_0	chr3	+	660	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	83	336	2	0	multi-exon	FALSE	canonical	3	2813	junction_1	66.9226419084005	700	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAAGATTCTGTGGCTGG	NA	False	NA	23	True	AATAAA	-25	NA	32791221	32805379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
ENSMUSG00000027676.12_0	chr3	-	3563	20	FSM	ENSMUSG00000027676.12	ENSMUST00000029222.8	3606	20	43	0	43	0	multi-exon	FALSE	canonical	0	0	junction_3	3.55720952604543	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAATGTTTCTTCTCTGA	NA	False	NA	NA	False	AATAAA	-17	NA	33898407	33866510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_33867350_33868338_33868416_33868501_33868679_33868803_33868945_33869560_33869668_33870060_33870221_33870976_33871101_33873956_33874166_33875525_33875664_33879539_33879705_33880603_33880799_33884173_33884307_33884805_33884910_33886676_33886869_33890864_33890994_33891088_33891182_33891954_33892114_33893226_33893374_33895217_33895338_33898253
ENSMUSG00000027676.12_1	chr3	-	1805	11	ISM	ENSMUSG00000027676.12	ENSMUST00000029222.8	3606	20	43	12815	43	-591	5prime_fragment	FALSE	canonical	2	2	junction_3	3.52278299076171	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAGATGATTATACTTA	NA	False	NA	NA	False	NA	NA	NA	33898407	33879325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_33879705_33880603_33880799_33884173_33884307_33884805_33884910_33886676_33886869_33890864_33890994_33891088_33891182_33891954_33892114_33893226_33893374_33895217_33895338_33898253
ENSMUSG00000027676.12_3	chr3	-	1504	3	FSM	ENSMUSG00000027676.12	ENSMUST00000197230.2	1557	3	52	1	43	-1	multi-exon	FALSE	canonical	2	4	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTTCTCTCCTGTTCCT	NA	False	NA	NA	False	AATAAA	-16	NA	33898407	33892143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_33893374_33895217_33895338_33898253
ENSMUSG00000027677.18_1	chr3	+	4537	11	NIC	ENSMUSG00000027677.18	novel	9661	10	NA	NA	-1	79	intron_retention	FALSE	canonical	2	24	junction_2	64.0059372246044	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTCATTTTTAAGTGAT	NA	False	NA	4	True	ATTAAA	-10	NA	33854360	33864172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_33854586_33854730_33854824_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964
ENSMUSG00000027677.18_24	chr3	+	3317	12	NIC	ENSMUSG00000027677.18	novel	2684	12	NA	NA	5	86	combination_of_known_junctions	TRUE	canonical	3	14	junction_10	54.0434474740096	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTTAAGTGATAAATTAT	NA	False	NA	11	True	ATTAAA	-17	NA	33854344	33864179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861575_33861987_33862098_33862834
ENSMUSG00000027677.18_3	chr3	+	2825	12	FSM	ENSMUSG00000027677.18	ENSMUST00000108210.9	2684	12	-49	-92	-8	92	multi-exon	FALSE	canonical	3	43	junction_10	47.3543002489332	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTGATAAATTATGACTTA	NA	False	NA	17	True	ATTAAA	-23	NA	33854350	33864185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33861987_33862098_33862834
ENSMUSG00000027677.18_6	chr3	+	4447	10	FSM	ENSMUSG00000027677.18	ENSMUST00000099153.10	9661	10	379	4835	1	81	multi-exon	FALSE	canonical	3	147	junction_6	17.9285275124711	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCATTTTTAAGTGATAA	NA	False	NA	6	True	ATTAAA	-12	NA	33854359	33864174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964
ENSMUSG00000027677.18_64	chr3	+	2020	1	ISM	ENSMUSG00000027677.18	ENSMUST00000099153.10	9661	10	9049	3960	6341	956	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAGAAATTTCATAATCAC	NA	False	NA	NA	False	AATAAA	-8	NA	33863029	33865049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_33863000_33865000
ENSMUSG00000027677.18_8	chr3	+	2900	12	FSM	ENSMUSG00000027677.18	ENSMUST00000199222.5	2438	12	-2	-460	1	193	multi-exon	FALSE	canonical	3	25	junction_10	51.4495660937939	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTGGTTAATCAGAGCC	NA	False	NA	-6	True	NA	NA	NA	33854359	33864286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33862004_33862098_33862834
ENSMUSG00000027678.18_1	chr2	+	5212	23	FSM	ENSMUSG00000027678.18	ENSMUST00000109252.8	5757	23	12	533	11	-533	multi-exon	FALSE	canonical	3	143	junction_19	38.1274504699546	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCAGGTCCTGCACTCTG	NA	False	NA	14	True	AATAAA	-14	NA	165834567	165912857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910251_165910469_165911124_165911300_165911730_165911873_165912051
ENSMUSG00000027678.18_2	chr2	+	5215	23	FSM	ENSMUSG00000027678.18	ENSMUST00000088095.6	7531	23	10	2306	10	-534	multi-exon	FALSE	canonical	3	140	junction_19	38.5042929880864	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCAGGTCCTGCACTCT	NA	False	NA	13	True	AATAAA	-13	NA	165834566	165912856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910248_165910469_165911124_165911300_165911730_165911873_165912051
ENSMUSG00000027678.18_54	chr2	+	3032	12	ISM	ENSMUSG00000027678.18	ENSMUST00000109252.8	5757	23	62625	534	-5559	-534	3prime_fragment	FALSE	canonical	3	143	junction_8	48.3234624669362	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCAGGTCCTGCACTCT	NA	False	NA	13	True	AATAAA	-13	NA	165897180	165912856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910251_165910469_165911124_165911300_165911730_165911873_165912051
ENSMUSG00000027678.18_70	chr2	+	1308	1	ISM	ENSMUSG00000027678.18	ENSMUST00000109252.8	5757	23	77521	6	2727	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGTAGCCCACTCATC	NA	False	NA	10	True	ATTAAA	-16	NA	165912076	165913384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_165912100_165913400
ENSMUSG00000027679.14_0	chr3	-	552	6	FSM	ENSMUSG00000027679.14	ENSMUST00000108195.10	659	6	19	88	8	-13	multi-exon	FALSE	canonical	3	3089	junction_3	262.703330774469	463	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGGCAAAAGCTAAATCA	NA	False	NA	-17	True	AATAAA	-31	NA	34135451	34131515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
ENSMUSG00000027680.16_0	chr3	+	2131	17	FSM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	-10	8	0	0	multi-exon	FALSE	canonical	3	754	junction_15	164.164884719601	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGAAATGTTATTTTGTT	4849	False	NA	12	True	ATTAAA	-15	NA	34074246	34123486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
ENSMUSG00000027680.16_1	chr3	+	2035	16	FSM	ENSMUSG00000027680.16	ENSMUST00000200392.5	3014	16	-6	985	-3	0	multi-exon	FALSE	canonical	3	506	junction_15	191.49767622611	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGAAATGTTATTTTGTT	4853	False	NA	12	True	ATTAAA	-15	NA	34074250	34123486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
ENSMUSG00000027680.16_136	chr3	+	594	1	ISM	ENSMUSG00000027680.16	ENSMUST00000200392.5	3014	16	49270	351	22746	-351	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCTGATTTTTAACTTT	NA	False	NA	9	True	AATAAA	-13	NA	34123526	34124120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_34123500_34124100
ENSMUSG00000027680.16_19	chr3	+	2214	16	NIC	ENSMUSG00000027680.16	novel	2459	17	NA	NA	-3	0	intron_retention	FALSE	canonical	3	754	junction_14	169.31149465474	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGAAATGTTATTTTGTT	4853	False	NA	12	True	ATTAAA	-15	NA	34074250	34123486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
ENSMUSG00000027680.16_3	chr3	+	2120	15	FSM	ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	-2	9	-2	-1	multi-exon	FALSE	canonical	3	506	junction_14	198.096296929405	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGGAAATGTTATTTTGT	4854	False	NA	11	True	ATTAAA	-14	NA	34074251	34123485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
ENSMUSG00000027680.16_5	chr3	+	3046	15	ISM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	-6	3594	-3	-3586	5prime_fragment	FALSE	canonical	3	1060	junction_7	79.2243005391551	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAACCAATTTTTGCAT	4853	False	NA	0	True	AATAAA	-9	NA	34074250	34119900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267
ENSMUSG00000027692.17_1	chr3	+	7001	32	FSM	ENSMUSG00000027692.17	ENSMUST00000159680.9	4380	32	-268	-2353	19	-9	multi-exon	FALSE	canonical	0	0	junction_2	5.51754367825169	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTGAGCCATGCCTTT	4136	False	NA	2	True	AATAAA	-12	NA	28317443	28724725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_28317849_28413139_28413206_28548115_28548173_28559901_28560028_28587036_28587148_28593562_28593654_28596116_28596248_28609076_28609132_28611187_28611267_28618223_28618400_28625015_28625083_28631517_28631723_28648170_28648282_28649055_28649143_28650220_28650410_28658324_28658490_28661286_28661527_28666011_28666119_28675083_28675248_28677159_28677258_28684579_28684765_28692536_28692667_28700745_28700911_28703291_28703404_28704175_28704347_28705931_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828_28719989_28720237_28720378_28722047
ENSMUSG00000027692.17_11	chr3	+	3283	7	ISM	ENSMUSG00000027692.17	ENSMUST00000160934.8	7108	32	388635	168	1822	-168	3prime_fragment	FALSE	canonical	3	18	junction_2	2.6718699236469	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATAAGGTAGTTTGTGA	8034	False	NA	NA	False	AATAAA	-18	NA	28705997	28724566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828_28719989_28720237_28720378_28722047
ENSMUSG00000027692.17_12	chr3	+	2034	1	FSM	ENSMUSG00000027692.17	ENSMUST00000192205.2	1904	1	1538	-1668	1538	-168	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATAAGGTAGTTTGTGA	1006	False	NA	NA	False	AATAAA	-18	NA	28722532	28724566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_28722500_28724600
ENSMUSG00000027692.17_13	chr3	+	6919	31	FSM	ENSMUSG00000027692.17	ENSMUST00000159236.9	12276	31	75	5282	14	-9	multi-exon	FALSE	canonical	0	0	junction_2	5.59851170699261	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTGAGCCATGCCTTT	4131	False	NA	2	True	AATAAA	-12	NA	28317438	28724725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_28317849_28413139_28413206_28548115_28548173_28559901_28560028_28587036_28587148_28593562_28593654_28596116_28596248_28609076_28609132_28611187_28611267_28618223_28618400_28625015_28625083_28631517_28631723_28648170_28648282_28650220_28650410_28658324_28658490_28661286_28661527_28666011_28666119_28675083_28675248_28677159_28677258_28684579_28684765_28692536_28692667_28700745_28700911_28703291_28703404_28704175_28704347_28705931_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828_28719989_28720237_28720378_28722047
ENSMUSG00000027692.17_2	chr3	+	6410	30	NIC	ENSMUSG00000027692.17	novel	1340	13	NA	NA	-7	-168	combination_of_known_junctions	FALSE	canonical	1	1	junction_12	4.87318367639435	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATAAGGTAGTTTGTGA	NA	False	NA	NA	False	AATAAA	-18	NA	28463572	28724566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_28463699_28548115_28548173_28559901_28560028_28587036_28587148_28593562_28593654_28596116_28596248_28609076_28609132_28611187_28611267_28618223_28618400_28625015_28625083_28631517_28631723_28648170_28648282_28650220_28650410_28658324_28658490_28661286_28661527_28666011_28666119_28675083_28675248_28677159_28677258_28684579_28684765_28692536_28692667_28700745_28700911_28703291_28703404_28704175_28704347_28705931_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828_28719989_28720237_28720378_28722047
ENSMUSG00000027692.17_4	chr3	+	3915	29	NIC	ENSMUSG00000027692.17	novel	1340	13	NA	NA	3	-19	combination_of_known_junctions	FALSE	canonical	2	5	junction_13	4.64821119861595	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AAGAAA	-23	NA	28463582	28720075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_28463699_28548115_28548173_28559901_28560028_28587036_28587148_28593562_28593654_28596116_28596248_28609076_28609132_28611187_28611267_28618223_28618400_28625015_28625083_28631517_28631723_28648170_28648282_28649055_28649143_28650220_28650410_28658324_28658490_28661286_28661527_28666011_28666119_28675083_28675248_28677159_28677258_28684579_28684765_28692536_28692667_28700745_28700911_28703291_28703404_28704175_28704347_28705931_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828
ENSMUSG00000027692.17_5	chr3	+	6629	31	NIC	ENSMUSG00000027692.17	novel	1340	13	NA	NA	20	-9	combination_of_known_junctions	FALSE	canonical	2	5	junction_13	4.82171016226493	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTGAGCCATGCCTTT	NA	False	NA	2	True	AATAAA	-12	NA	28463599	28724725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_28463699_28548115_28548173_28559901_28560028_28587036_28587148_28593562_28593654_28596116_28596248_28609076_28609132_28611187_28611267_28618223_28618400_28625015_28625083_28631517_28631723_28648170_28648282_28649055_28649143_28650220_28650410_28658324_28658490_28661286_28661527_28666011_28666119_28675083_28675248_28677159_28677258_28684579_28684765_28692536_28692667_28700745_28700911_28703291_28703404_28704175_28704347_28705931_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828_28719989_28720237_28720378_28722047
ENSMUSG00000027692.17_9	chr3	+	4806	16	ISM	ENSMUSG00000027692.17	ENSMUST00000160934.8	7108	32	344004	3	-22654	-3	3prime_fragment	FALSE	canonical	3	13	junction_4	3.44867124170068	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCATGCCTTTTATATT	NA	False	NA	8	True	AATAAA	-18	NA	28661366	28724731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_28661527_28666011_28666119_28675083_28675248_28677159_28677258_28684579_28684765_28692536_28692667_28700745_28700911_28703291_28703404_28704175_28704347_28705931_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828_28719989_28720237_28720378_28722047
ENSMUSG00000027695.17_0	chr3	+	4880	27	FSM	ENSMUSG00000027695.17	ENSMUST00000120834.8	4849	27	-41	10	-41	-5	multi-exon	TRUE	canonical	1	4	junction_2	5.02258214078643	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGGCCAAGGATGGTGAA	8165	False	NA	NA	False	AATAAA	-14	NA	27992802	28187378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_27992900_28006661_28006812_28078311_28078503_28079361_28079490_28082744_28082891_28083315_28083422_28085385_28085452_28093924_28093984_28095333_28095427_28099092_28099246_28102161_28102312_28103357_28103442_28110611_28110694_28125314_28125426_28130539_28130741_28132352_28132567_28139934_28140064_28141320_28141440_28142794_28142909_28149919_28150031_28153808_28153898_28163883_28163998_28166391_28166442_28174842_28174978_28178721_28178876_28184461_28184580_28185662
ENSMUSG00000027695.17_3	chr3	+	3649	17	ISM	ENSMUSG00000027695.17	ENSMUST00000067757.11	4804	26	63892	-3	6797	-2	3prime_fragment	FALSE	canonical	1	9	junction_2	4.76969600708473	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGATGGTGAAATCATTTC	NA	False	NA	NA	False	AATAAA	-22	NA	28102211	28187386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_28102312_28103357_28103442_28110611_28110694_28125314_28125426_28130539_28130741_28132352_28132567_28139934_28140064_28141320_28141440_28142794_28142909_28149919_28150031_28153808_28153898_28163883_28163998_28166391_28166442_28174842_28174978_28178721_28178876_28184461_28184580_28185662
ENSMUSG00000027695.17_9	chr3	+	4953	28	NIC	ENSMUSG00000027695.17	novel	4849	27	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	6.00228580144678	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGGCCAAGGATGGTGAA	8206	False	NA	NA	False	AATAAA	-14	NA	27992843	28187378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_27992900_28006661_28006812_28078311_28078503_28079361_28079490_28082744_28082891_28083315_28083422_28085385_28085452_28093924_28093984_28095333_28095427_28099092_28099246_28102161_28102312_28103357_28103442_28110611_28110694_28125314_28125426_28130539_28130741_28132352_28132567_28133337_28133452_28139934_28140064_28141320_28141440_28142794_28142909_28149919_28150031_28153808_28153898_28163883_28163998_28166391_28166442_28174842_28174978_28178721_28178876_28184461_28184580_28185662
ENSMUSG00000027698.15_0	chr3	+	4441	5	FSM	ENSMUSG00000027698.15	ENSMUST00000046515.15	4480	5	36	3	-3	-3	multi-exon	FALSE	canonical	3	107	junction_3	11.2333209693305	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCATGCCTCTGGCCCTT	5604	False	NA	7	True	AATAAA	-14	NA	27237149	27299104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_27237365_27276816_27277046_27280221_27280292_27293680_27293853_27295349
ENSMUSG00000027698.15_6	chr3	+	4151	4	ISM	ENSMUSG00000027698.15	ENSMUST00000046515.15	4480	5	39779	2	34303	-2	3prime_fragment	FALSE	canonical	3	107	junction_2	11.5854314646552	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCATGCCTCTGGCCCTTC	NA	False	NA	8	True	AATAAA	-15	NA	27276892	27299105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_27277046_27280221_27280292_27293680_27293853_27295349
ENSMUSG00000027698.15_9	chr3	+	2718	1	ISM	ENSMUSG00000027698.15	ENSMUST00000046515.15	4480	5	59274	2	53798	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCATGCCTCTGGCCCTTC	NA	False	NA	8	True	AATAAA	-15	NA	27296387	27299105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_27296400_27299100
ENSMUSG00000027699.20_0	chr3	-	4057	25	NIC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	-2	-8	combination_of_known_junctions	FALSE	canonical	3	581	junction_24	64.5165784034529	1031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATACAAGTATCTTTTAT	1858	False	NA	NA	False	AATAAA	-8	NA	27207979	27151382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
ENSMUSG00000027699.20_2	chr3	-	4043	25	FSM	ENSMUSG00000027699.20	ENSMUST00000108300.8	4086	25	31	12	-2	-8	multi-exon	FALSE	canonical	3	272	junction_24	111.161098998506	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATACAAGTATCTTTTAT	1858	False	NA	NA	False	AATAAA	-8	NA	27207979	27151382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207865
ENSMUSG00000027702.8_0	chr3	-	1813	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	72	6	72	-6	multi-exon	TRUE	canonical	3	297	junction_6	40.0710618776194	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAATGACTGTCTTGAGT	NA	False	NA	-24	True	AATAAA	-13	NA	30701946	30678421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
ENSMUSG00000027703.17_0	chr3	+	2109	6	FSM	ENSMUSG00000027703.17	ENSMUST00000108265.3	2092	6	111	-128	111	-4	multi-exon	FALSE	canonical	3	7	junction_1	18.0177690072883	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAATGTTTGTGGGAAG	NA	False	NA	1	True	NA	NA	NA	30702145	30726576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_30702410_30704053_30705102_30709785_30709960_30713202_30713342_30714049_30714247_30726289
ENSMUSG00000027703.17_3	chr3	+	773	3	NNC	ENSMUSG00000027703.17	novel	2387	8	NA	NA	10846	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	6.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTTGTGGGAAGAATG	NA	False	NA	5	True	NA	NA	NA	30712880	30726580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_30713166_30714049_30714247_30726289
ENSMUSG00000027703.17_8	chr3	+	1968	5	NIC	ENSMUSG00000027703.17	novel	2092	6	NA	NA	113	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	21.2294017814916	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAATGTTTGTGGGAAG	NA	False	NA	1	True	NA	NA	NA	30702147	30726576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_30702410_30704053_30705102_30709785_30709960_30714049_30714247_30726289
ENSMUSG00000027706.9_0	chr3	+	2323	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	457	1187	-4	44	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATAAAAGAAAACACAGCA	NA	False	NA	-7	True	AATAAA	-3	NA	30847480	30874225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
ENSMUSG00000027706.9_1	chr3	+	1673	9	NNC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	-4	33	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_8	221.180356270624	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAAGGATATAAAAG	NA	False	NA	-18	True	NA	NA	NA	30847480	30874214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873724
ENSMUSG00000027706.9_2	chr3	+	1702	9	NIC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	-7	44	combination_of_known_junctions	FALSE	canonical	3	39	junction_8	236.604495942068	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATAAAAGAAAACACAGCA	NA	False	NA	-7	True	AATAAA	-3	NA	30847477	30874225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873709
ENSMUSG00000027706.9_24	chr3	+	1704	1	NIC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	-489	33	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAAGGATATAAAAG	8192	False	NA	-18	True	NA	NA	NA	30872510	30874214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_30872500_30874200
ENSMUSG00000027708.15_0	chr3	-	3008	7	FSM	ENSMUSG00000027708.15	ENSMUST00000108182.10	4980	7	635	1337	-1	64	multi-exon	FALSE	canonical	3	154	junction_3	19.8445346520284	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGAAAATTGATTTAATG	NA	False	NA	NA	False	ATTAAA	-20	NA	35986986	35947590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986933
ENSMUSG00000027708.15_1	chr3	-	3329	6	NIC	ENSMUSG00000027708.15	novel	4980	7	NA	NA	-1	516	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	59.8351067518058	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGACTAAATCTTCTCC	NA	False	NA	NA	False	AATAAA	-16	NA	35986986	35947138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_35949849_35951612_35951710_35951941_35952025_35973149_35973319_35975119_35975337_35986933
ENSMUSG00000027708.15_3	chr3	-	1836	1	ISM	ENSMUSG00000027708.15	ENSMUST00000178098.8	4434	7	37512	882	15023	519	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTAAATCTTCTCCCAT	NA	False	NA	NA	False	AATAAA	-19	NA	35948971	35947135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_35947100_35949000
ENSMUSG00000027708.15_5	chr3	-	2956	6	ISM	ENSMUSG00000027708.15	ENSMUST00000198389.5	3020	7	8886	-64	0	64	3prime_fragment	FALSE	canonical	3	154	junction_3	20.9513722700925	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGAAAATTGATTTAATG	NA	False	NA	NA	False	ATTAAA	-20	NA	35975337	35947590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119
ENSMUSG00000027709.10_2	chr3	-	2411	19	FSM	ENSMUSG00000027709.10	ENSMUST00000029259.10	2455	19	36	8	-1	-2	multi-exon	FALSE	canonical	3	210	junction_8	26.6884748788316	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATAAGACTGAGCTGTA	NA	False	NA	NA	False	TATAAA	-20	NA	36054791	36013989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
ENSMUSG00000027709.10_8	chr3	-	3897	18	NIC	ENSMUSG00000027709.10	novel	2455	19	NA	NA	-10	-2	intron_retention	FALSE	canonical	3	210	junction_7	27.4612025785256	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATAAGACTGAGCTGTA	NA	False	NA	NA	False	TATAAA	-20	NA	36054768	36013989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
ENSMUSG00000027710.15_0	chr3	+	2441	18	FSM	ENSMUSG00000027710.15	ENSMUST00000011492.15	3930	18	93	1396	0	85	multi-exon	FALSE	canonical	3	170	junction_2	13.4755962948483	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTAGTGCTCCTCCAC	NA	False	NA	8	True	AATAAA	-27	NA	36120220	36145606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36128606_36129391_36129493_36130124_36130204_36130870_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143042_36143480_36143610_36144230_36144304_36144979
ENSMUSG00000027710.15_4	chr3	+	2887	19	NNC	ENSMUSG00000027710.15	novel	3930	18	NA	NA	1	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	45.9398425748551	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATATTAAAGAAATTCC	NA	False	NA	-8	True	NA	NA	NA	36120221	36146989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36128606_36129391_36129493_36130124_36130204_36130870_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143042_36143480_36143610_36144230_36144304_36144979_36146006_36146941
ENSMUSG00000027712.14_0	chr3	-	1508	13	FSM	ENSMUSG00000027712.14	ENSMUST00000029266.14	1731	13	220	3	-15	-3	multi-exon	FALSE	canonical	3	95	junction_1	8.69985632065266	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCCTGTGTAGGTTTGTG	NA	False	NA	0	True	AATAAA	-18	NA	36529823	36503074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_36503556_36504460_36504584_36504786_36504846_36506335_36506432_36507619_36507714_36511141_36511199_36511607_36511688_36514591_36514683_36516029_36516144_36518116_36518212_36519399_36519485_36529578_36529610_36529721
ENSMUSG00000027712.14_3	chr3	-	1374	11	ISM	ENSMUSG00000027712.14	ENSMUST00000029266.14	1731	13	10560	3	10325	-3	3prime_fragment	FALSE	canonical	3	95	junction_1	8.86791971095815	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCCTGTGTAGGTTTGTG	2331	False	NA	0	True	AATAAA	-18	NA	36519483	36503074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_36503556_36504460_36504584_36504786_36504846_36506335_36506432_36507619_36507714_36511141_36511199_36511607_36511688_36514591_36514683_36516029_36516144_36518116_36518212_36519399
ENSMUSG00000027714.12_1	chr3	+	1585	12	FSM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	25	7	4	-7	multi-exon	FALSE	canonical	3	373	junction_11	43.5980892749872	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTAACATCTGAGAGCCG	NA	False	NA	8	True	AATAAA	-16	NA	36606779	36619869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617221_36617407_36619366_36619446_36619577
ENSMUSG00000027714.12_4	chr3	+	1723	11	ISM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	22	4	1	-4	intron_retention	FALSE	canonical	3	414	junction_7	34.2175393621458	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACATCTGAGAGCCGAAT	NA	False	NA	11	True	AATAAA	-19	NA	36606776	36619872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617221_36617407_36619366
ENSMUSG00000027715.10_1	chr3	-	2772	8	FSM	ENSMUSG00000027715.10	ENSMUST00000029270.10	2965	8	184	9	-2	-9	multi-exon	FALSE	canonical	3	973	junction_1	54.4767315990441	1577	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTTTACCCATTTGGTG	NA	False	NA	-16	True	AATAAA	-12	NA	36626115	36619022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_36620432_36620689_36620824_36621148_36621263_36621872_36622081_36622736_36622961_36623128_36623239_36624884_36625129_36625786
ENSMUSG00000027722.15_0	chr3	+	2878	16	FSM	ENSMUSG00000027722.15	ENSMUST00000108112.10	3295	16	411	6	-5	0	multi-exon	FALSE	canonical	3	324	junction_1	47.7393850912314	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCAGCTAGTTTTATCTT	NA	False	NA	5	True	AATAAA	-14	NA	37474455	37633239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37632900
ENSMUSG00000027722.15_1	chr3	+	2876	16	FSM	ENSMUSG00000027722.15	ENSMUST00000029277.13	2890	16	8	6	-6	0	multi-exon	FALSE	canonical	3	115	junction_1	86.3305276249369	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCAGCTAGTTTTATCTT	NA	False	NA	5	True	AATAAA	-14	NA	37474454	37633239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_37474650_37478662_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37632900
ENSMUSG00000027722.15_2	chr3	+	2915	17	FSM	ENSMUSG00000027722.15	ENSMUST00000198968.2	2916	17	-5	6	-5	0	multi-exon	FALSE	canonical	3	83	junction_15	114.842266146876	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCAGCTAGTTTTATCTT	NA	False	NA	5	True	AATAAA	-14	NA	37474455	37633239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37584131_37584169_37632900
ENSMUSG00000027722.15_6	chr3	+	2913	17	NIC	ENSMUSG00000027722.15	novel	2916	17	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	83	junction_15	130.436227233848	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCAGCTAGTTTTATCTT	NA	False	NA	5	True	AATAAA	-14	NA	37474454	37633239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_37474650_37478662_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37584131_37584169_37632900
ENSMUSG00000027737.11_0	chr3	-	4697	1	ISM	ENSMUSG00000027737.11	ENSMUST00000029297.6	9223	12	73927	50	1115	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATTAAGCATCATGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	50324133	50319436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_50319400_50324100
ENSMUSG00000027737.11_1	chr3	-	2310	12	FSM	ENSMUSG00000027737.11	ENSMUST00000029297.6	9223	12	26	6887	20	-1976	multi-exon	FALSE	canonical	2	3	junction_8	2.75740925238238	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACATTGGACTCTTTTCCC	8857	False	NA	NA	False	NA	NA	NA	50398034	50326273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_50326816_50332012_50332191_50333483_50333634_50335420_50335518_50336323_50336428_50338492_50338617_50372436_50372482_50378490_50378591_50382099_50382226_50389797_50389914_50393237_50393365_50397433
ENSMUSG00000027739.10_1	chr3	+	2905	2	FSM	ENSMUSG00000027739.10	ENSMUST00000054387.8	3492	2	256	331	256	-331	multi-exon	FALSE	canonical	3	63	junction_1	0	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGGAAGCGTTTCTTTCT	NA	False	NA	-1	True	AATAAA	-12	NA	51391642	51403322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_51392002_51400776
ENSMUSG00000027739.10_2	chr3	+	1880	1	ISM	ENSMUSG00000027739.10	ENSMUST00000054387.8	3492	2	10056	331	10056	-331	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGGAAGCGTTTCTTTCT	NA	False	NA	-1	True	AATAAA	-12	NA	51401442	51403322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_51401400_51403300
ENSMUSG00000027742.14_0	chr3	-	2912	19	FSM	ENSMUSG00000027742.14	ENSMUST00000036665.10	3182	19	19	251	0	-4	multi-exon	TRUE	canonical	3	106	junction_7	14.5610676585896	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTCTTTGTAGTATTTT	NA	False	NA	-5	True	ATTAAA	-14	NA	52924639	52889546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_52890613_52893821_52893902_52896530_52896585_52897379_52897488_52900175_52900344_52900860_52900993_52903428_52903547_52905677_52905770_52907901_52907967_52909666_52909759_52909833_52909963_52914666_52914761_52916473_52916545_52916893_52916977_52917996_52918109_52920326_52920386_52921235_52921308_52922889_52923034_52924466
ENSMUSG00000027746.14_0	chr3	-	1625	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	30	3235	30	1211	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTTACTGAATTCATAAA	NA	False	NA	NA	False	NA	NA	NA	53771221	53764031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
ENSMUSG00000027746.14_3	chr3	-	920	5	FSM	ENSMUSG00000027746.14	ENSMUST00000148338.8	381	5	27	-566	27	566	multi-exon	FALSE	canonical	3	324	junction_3	16.1012421881046	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGTCTTTTTGAGGAT	NA	False	NA	-6	True	AATAAA	-21	NA	53771083	53764676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034
ENSMUSG00000027751.14_1	chr3	+	3099	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	226	junction_20	93.1009504905751	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCGTGGTGTCTGTTCATT	NA	False	NA	34	True	TATAAA	-45	NA	54600242	54636183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ENSMUSG00000027751.14_18	chr3	+	2862	27	NIC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	198	junction_6	101.803856252742	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCGTGGTGTCTGTTCATT	NA	False	NA	34	True	TATAAA	-45	NA	54600245	54636183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ENSMUSG00000027751.14_4	chr3	+	2861	27	FSM	ENSMUSG00000027751.14	ENSMUST00000197502.5	2751	27	16	-126	0	0	multi-exon	FALSE	canonical	3	259	junction_20	89.4210256174979	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCGTGGTGTCTGTTCATT	NA	False	NA	34	True	TATAAA	-45	NA	54600243	54636183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ENSMUSG00000027751.14_92	chr3	+	2854	27	NIC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	116.599933013266	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCGTGGTGTCTGTTCA	NA	False	NA	32	True	TATAAA	-43	NA	54600283	54636181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ENSMUSG00000027752.16_0	chr3	-	938	11	FSM	ENSMUSG00000027752.16	ENSMUST00000029316.16	1300	11	355	7	-1	-3	multi-exon	FALSE	canonical	3	1645	junction_10	187.140588863026	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATATTTCTAGTCCTTA	NA	False	NA	-19	True	AATAAA	-20	NA	54642459	54636105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027752.16_1	chr3	-	907	10	ISM	ENSMUSG00000027752.16	ENSMUST00000029316.16	1300	11	1061	7	5	-3	3prime_fragment	FALSE	canonical	3	1829	junction_6	127.661976511856	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATATTTCTAGTCCTTA	NA	False	NA	-19	True	AATAAA	-20	NA	54641753	54636105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716
ENSMUSG00000027752.16_5	chr3	-	1832	9	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	1645	junction_8	201.288932569578	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATATTTCTAGTCCTTA	NA	False	NA	-19	True	AATAAA	-20	NA	54642459	54636105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027763.14_0	chr3	+	5624	10	NIC	ENSMUSG00000027763.14	novel	5655	10	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	38.8857141561281	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATATTTGTGTGCCTGA	NA	False	NA	21	True	AATAAA	-33	NA	60408641	60537164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_60408845_60436176_60437226_60503014_60503186_60511114_60511316_60520683_60520942_60522103_60522158_60523040_60523195_60529566_60529662_60532544_60532620_60533800
ENSMUSG00000027763.14_1	chr3	+	5618	9	FSM	ENSMUSG00000027763.14	ENSMUST00000194069.6	5460	9	-142	-16	-43	-1	multi-exon	FALSE	canonical	3	10	junction_7	45.5314108610748	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTGTGCCTGAGATT	NA	False	NA	25	True	AATAAA	-37	NA	60408556	60537168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_60408845_60436176_60437226_60503014_60503186_60511114_60511316_60520683_60520942_60522103_60522158_60523040_60523195_60532544_60532620_60533800
ENSMUSG00000027763.14_10	chr3	+	5091	10	NIC	ENSMUSG00000027763.14	novel	5655	10	NA	NA	-277	-5	combination_of_known_junctions	FALSE	canonical	3	50	junction_7	28.6373665938769	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGGTGGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60436174	60536796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_60437226_60503014_60503186_60511114_60511316_60520683_60520942_60522103_60522158_60523040_60523195_60528843_60528880_60529566_60529662_60532544_60532620_60533800
ENSMUSG00000027763.14_12	chr3	+	6353	3	ISM	ENSMUSG00000027763.14	ENSMUST00000193517.6	5151	9	90300	1	-3947	-1	3prime_fragment	FALSE	canonical	3	109	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTGTGCCTGAGATT	888	False	NA	25	True	AATAAA	-37	NA	60526751	60537168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_60529662_60532544_60532620_60533800
ENSMUSG00000027763.14_17	chr3	+	5267	10	NIC	ENSMUSG00000027763.14	novel	5151	9	NA	NA	182	-5	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	42.0505281010863	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGGTGGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60435730	60536796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_60435945_60436176_60437226_60503014_60503186_60511114_60511316_60520683_60520942_60522103_60522158_60523040_60523195_60529566_60529662_60532544_60532620_60533800
ENSMUSG00000027763.14_20	chr3	+	4239	8	ISM	ENSMUSG00000027763.14	ENSMUST00000193518.6	1343	9	7981	-2948	154	-5	3prime_fragment	FALSE	canonical	3	50	junction_5	28.0378752579362	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATATTTGTGTGCCTGA	2645	False	NA	21	True	AATAAA	-33	NA	60511112	60537164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_60511316_60520683_60520942_60522103_60522158_60523040_60523195_60528843_60528880_60529566_60529662_60532544_60532620_60533800
ENSMUSG00000027763.14_3	chr3	+	5659	11	NIC	ENSMUSG00000027763.14	novel	5655	10	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	36.6727419209418	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATATTTGTGTGCCTGA	NA	False	NA	21	True	AATAAA	-33	NA	60408642	60537164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_60408845_60436176_60437226_60503014_60503186_60511114_60511316_60520683_60520942_60522103_60522158_60523040_60523195_60528843_60528880_60529566_60529662_60532544_60532620_60533800
ENSMUSG00000027763.14_4	chr3	+	5334	11	NIC	ENSMUSG00000027763.14	novel	5151	9	NA	NA	156	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	39.6162845304806	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60435704	60536801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_60435945_60436176_60437226_60503014_60503186_60511114_60511316_60520683_60520942_60522103_60522158_60523040_60523195_60528843_60528880_60529566_60529662_60532544_60532620_60533800
ENSMUSG00000027763.14_7	chr3	+	2261	1	ISM	ENSMUSG00000027763.14	ENSMUST00000099087.8	5655	10	126304	7	4205	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATATTTGTGTGCCTGA	3660	False	NA	21	True	AATAAA	-33	NA	60534903	60537164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_60534900_60537200
ENSMUSG00000027765.7_0	chr3	+	2194	1	FSM	ENSMUSG00000027765.7	ENSMUST00000193943.2	2203	1	-5	14	-1	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCTATCCTTTAAACAA	NA	False	NA	NA	False	CATAAA	-7	NA	60910214	60912408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_60910200_60912400
ENSMUSG00000027770.6_0	chr3	-	3537	25	FSM	ENSMUSG00000027770.6	ENSMUST00000029336.6	5620	25	13	2070	13	562	multi-exon	FALSE	canonical	3	420	junction_17	54.5870704827516	692	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAACTTCTTGGTTTGGT	NA	False	NA	NA	False	AATAAA	-38	NA	62414412	62377503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_62378169_62378742_62378896_62379419_62379541_62380148_62380240_62380350_62380451_62382690_62382775_62384703_62384791_62384926_62385101_62386740_62386840_62388222_62388341_62391551_62391696_62392375_62392441_62394430_62394487_62395550_62395639_62395965_62396069_62396318_62396460_62399771_62399854_62401150_62401318_62401764_62401840_62402878_62402959_62404149_62404321_62405510_62405550_62408254_62408490_62409394_62409520_62414138
ENSMUSG00000027774.17_1	chr3	+	2580	18	FSM	ENSMUSG00000027774.17	ENSMUST00000077271.9	4078	18	35	1463	15	262	multi-exon	TRUE	canonical	0	0	junction_6	154.691388272057	655	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATATATAATATTATA	NA	False	NA	NA	False	AGTAAA	-29	NA	67337463	67382399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
ENSMUSG00000027775.10_0	chr3	+	2960	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	42	9	42	-9	multi-exon	TRUE	canonical	3	661	junction_4	69.2886394407882	1254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACCTATTTGGAGGATA	NA	False	NA	10	True	AATAAA	-11	NA	67490115	67511561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
ENSMUSG00000027777.16_0	chr3	+	2030	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182532.8	2059	8	6	23	6	-5	multi-exon	FALSE	canonical	3	12	junction_1	163.233149894529	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGATACGTCCTTTTGCT	NA	False	NA	16	True	AATAAA	-18	NA	68375521	68533791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_68375563_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUSG00000027777.16_10	chr3	+	2082	7	ISM	ENSMUSG00000027777.16	ENSMUST00000182719.8	2156	8	273	5	273	-5	3prime_fragment	FALSE	canonical	3	341	junction_1	53.0830062784273	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGATACGTCCTTTTGCT	NA	False	NA	16	True	AATAAA	-18	NA	68401813	68533791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUSG00000027777.16_2	chr3	+	2238	8	NIC	ENSMUSG00000027777.16	novel	1298	6	NA	NA	-134	-5	combination_of_known_junctions	FALSE	canonical	2	19	junction_1	160.899004956272	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGATACGTCCTTTTGCT	NA	False	NA	16	True	AATAAA	-18	NA	68400689	68533791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_68400939_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUSG00000027777.16_24	chr3	+	1556	7	FSM	ENSMUSG00000027777.16	ENSMUST00000170788.9	1730	7	168	6	168	-5	multi-exon	FALSE	canonical	3	114	junction_1	136.891684675634	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGATACGTCCTTTTGCT	NA	False	NA	16	True	AATAAA	-18	NA	68479745	68533791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_68479997_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUSG00000027777.16_6	chr3	+	2109	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182719.8	2156	8	42	5	42	-5	multi-exon	FALSE	canonical	3	304	junction_1	72.6321455791344	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGATACGTCCTTTTGCT	NA	False	NA	16	True	AATAAA	-18	NA	68401582	68533791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_68401703_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUSG00000027778.16_0	chr3	-	2474	7	FSM	ENSMUSG00000027778.16	ENSMUST00000136176.2	2860	7	1530	-1144	1530	-2	multi-exon	FALSE	canonical	3	29	junction_5	3.07769755210323	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGAAGTCTGTTTGTGTTC	NA	False	NA	NA	False	AATAAA	-17	NA	68825908	68799833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822
ENSMUSG00000027778.16_1	chr3	-	4038	20	FSM	ENSMUSG00000027778.16	ENSMUST00000169064.8	4064	20	39	-13	-6	13	multi-exon	FALSE	non_canonical	3	27	junction_10	3.97847393451879	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAATAATGAAGTC	NA	False	NA	NA	False	AATAAA	-6	NA	68911864	68799844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747_68892817_68895216_68895328_68898074_68898295_68901831_68901916_68911764
ENSMUSG00000027778.16_10	chr3	-	2322	6	ISM	ENSMUSG00000027778.16	ENSMUST00000136176.2	2860	7	2057	-1134	2057	-12	3prime_fragment	FALSE	canonical	3	29	junction_5	2.68328157299975	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATAATGAAGTCT	NA	False	NA	NA	False	AATAAA	-7	NA	68825381	68799843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289
ENSMUSG00000027778.16_12	chr3	-	1238	1	ISM	ENSMUSG00000027778.16	ENSMUST00000107812.8	4063	20	110792	15	21364	11	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTTAAAAAAAAATAATGAAG	NA	False	NA	NA	False	AATAAA	-4	NA	68801084	68799846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_68799800_68801100
ENSMUSG00000027778.16_14	chr3	-	3941	19	ISM	ENSMUSG00000027778.16	ENSMUST00000169064.8	4064	20	9986	-14	-47	-12	3prime_fragment	FALSE	non_canonical	3	27	junction_10	4.07074780038275	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATAATGAAGTCT	968	False	NA	NA	False	AATAAA	-7	NA	68901917	68799843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747_68892817_68895216_68895328_68898074_68898295_68901831
ENSMUSG00000027778.16_16	chr3	-	3891	19	NIC	ENSMUSG00000027778.16	novel	4064	20	NA	NA	20	5	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	8.90848534326184	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGGTTAAAAAAAAATA	NA	False	NA	NA	False	AAGAAA	-40	NA	68911790	68799852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822_68825959_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747_68892817_68895216_68895328_68898074_68898295_68901831_68901916_68911764
ENSMUSG00000027778.16_17	chr3	-	2715	14	NIC	ENSMUSG00000027778.16	novel	4064	20	NA	NA	1	-18	intron_retention	FALSE	non_canonical	3	27	junction_4	4.32414440694006	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAAATAAATCTTAA	NA	False	NA	NA	False	NA	NA	NA	68911891	68824795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747_68892817_68895216_68895328_68898074_68898295_68901831_68901916_68911764
ENSMUSG00000027778.16_5	chr3	-	3512	16	ISM	ENSMUSG00000027778.16	ENSMUST00000029347.14	3880	19	9066	-14	9066	-12	3prime_fragment	FALSE	canonical	3	27	junction_10	3.63073301445069	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATAATGAAGTCT	9982	False	NA	NA	False	AATAAA	-7	NA	68892804	68799843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747
ENSMUSG00000027778.16_6	chr3	-	2997	12	ISM	ENSMUSG00000027778.16	ENSMUST00000029347.14	3880	19	44124	-14	23332	-12	3prime_fragment	FALSE	canonical	3	27	junction_10	3.59981634058606	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATAATGAAGTCT	NA	False	NA	NA	False	AATAAA	-7	NA	68857746	68799843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686
ENSMUSG00000027782.11_0	chr3	-	4328	1	ISM	ENSMUSG00000027782.11	ENSMUST00000029353.9	8819	17	55627	10	55144	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAACTTCTCACATGACT	NA	False	NA	-14	True	NA	NA	NA	68978819	68974491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_68974500_68978800
ENSMUSG00000027782.11_1	chr3	-	3702	17	FSM	ENSMUSG00000027782.11	ENSMUST00000194558.6	3726	17	16	8	16	-8	multi-exon	FALSE	canonical	3	213	junction_6	26.0353575690829	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGGGCGTGTGTGTGGT	NA	False	NA	-9	True	AATAAA	-25	NA	69034409	68979561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_68981521_68984082_68984178_68986709_68986873_68988491_68988564_68991382_68991488_68993019_68993149_68994789_68994922_68997108_68997154_68997240_68997411_69000142_69000230_69001985_69002072_69002852_69002949_69008384_69008438_69008534_69008565_69008673_69008764_69009536_69009582_69034064
ENSMUSG00000027784.11_0	chr3	+	3784	4	FSM	ENSMUSG00000027784.11	ENSMUST00000029355.9	9417	4	1	5632	1	2071	multi-exon	FALSE	canonical	3	48	junction_1	7.40870359029762	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATGTTTGGGTGAAGAA	1775	False	NA	1	True	AATAAA	-13	NA	69224194	69462503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_69225299_69405103_69405279_69456658_69456821_69460160
ENSMUSG00000027784.11_4	chr3	+	6233	1	ISM	ENSMUSG00000027784.11	ENSMUST00000029355.9	9417	4	237684	25	5566	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAAACTATATGTTCCTA	NA	False	NA	0	True	AATAAA	-34	NA	69461877	69468110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_69461900_69468100
ENSMUSG00000027784.11_5	chr3	+	3821	1	ISM	ENSMUSG00000027784.11	ENSMUST00000029355.9	9417	4	240112	9	7994	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACTATTCTTTTCCTTGA	NA	False	NA	16	True	ATTAAA	-19	NA	69464305	69468126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_69464300_69468100
ENSMUSG00000027787.15_0	chr3	+	1749	16	FSM	ENSMUSG00000027787.15	ENSMUST00000029358.15	9135	16	57	7329	10	2	multi-exon	FALSE	canonical	3	839	junction_3	66.7311687960648	826	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGTTGTGAAGGTTTCA	NA	False	NA	13	True	AATAAA	-23	NA	69629374	69656377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
ENSMUSG00000027792.12_0	chr3	-	4475	4	FSM	ENSMUSG00000027792.12	ENSMUST00000029367.6	6210	4	188	1547	15	-1547	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAAAACTGACTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	73615560	73544687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_73547375_73555969_73556137_73607904_73609433_73615467
ENSMUSG00000027793.7_0	chr3	-	1518	9	FSM	ENSMUSG00000027793.7	ENSMUST00000029368.7	1560	9	48	-6	30	0	multi-exon	FALSE	canonical	0	0	junction_8	3.25720355519885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGGGCTCTTTACTAGT	NA	False	NA	NA	False	AATAAA	-21	NA	54962428	54952889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_54953130_54953387_54953522_54954629_54954744_54955828_54956034_54957098_54957323_54957966_54958092_54958269_54958517_54961753_54961940_54962385
ENSMUSG00000027793.7_5	chr3	-	1539	9	NIC	ENSMUSG00000027793.7	novel	1560	9	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_8	1.65359456941537	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGGGGCTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	54962439	54952895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_54953130_54953387_54953522_54954629_54954744_54955828_54956034_54957098_54957323_54957966_54958092_54958269_54958517_54961753_54961940_54962369
ENSMUSG00000027793.7_8	chr3	-	1623	9	NIC	ENSMUSG00000027793.7	novel	1560	9	NA	NA	-60	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	3.25720355519885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGGGGCTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	54962536	54952895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_54953130_54953387_54953522_54954629_54954744_54955828_54956034_54957098_54957323_54957966_54958092_54958269_54958517_54961753_54961943_54962385
ENSMUSG00000027794.5_0	chr3	+	2346	11	FSM	ENSMUSG00000027794.5	ENSMUST00000029369.5	2364	11	11	7	11	-7	multi-exon	FALSE	canonical	3	238	junction_8	29.6317397396778	429	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATAATAGTGTGCAAGGA	NA	False	NA	13	True	AATAAA	-15	NA	55089459	55117371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_55089536_55096541_55096757_55097730_55097793_55097874_55097980_55099659_55099757_55102493_55102605_55104147_55104296_55104418_55104508_55111754_55111877_55115013_55115271_55116307
ENSMUSG00000027796.3_5	chr3	+	3595	4	ISM	ENSMUSG00000027796.3	ENSMUST00000029371.3	5368	6	30650	874	30650	-874	3prime_fragment	FALSE	canonical	3	10	junction_1	2.62466929133727	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATACCATGCATTCCACA	558	False	NA	NA	False	AATAAA	-5	NA	54693652	54707804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_54693743_54696606_54696829_54701652_54701910_54704778
ENSMUSG00000027796.3_8	chr3	+	1719	5	ISM	ENSMUSG00000027796.3	ENSMUST00000029371.3	5368	6	26468	3641	26468	-3641	3prime_fragment	FALSE	canonical	2	9	junction_1	3.04138126514911	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACGTTTATATCACCGT	NA	False	NA	NA	False	AATACA	-16	NA	54689470	54705037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_54690194_54693484_54693743_54696606_54696829_54701652_54701910_54704778
ENSMUSG00000027796.3_9	chr3	+	1863	3	ISM	ENSMUSG00000027796.3	ENSMUST00000029371.3	5368	6	26828	10830	26828	-10830	internal_fragment	FALSE	canonical	2	9	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGTGTAGTTGAGGTT	NA	False	NA	NA	False	AATACA	-8	NA	54689830	54697848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_54690194_54693484_54693743_54696606
ENSMUSG00000027799.13_7	chr3	-	6982	29	NIC	ENSMUSG00000027799.13	novel	10986	58	NA	NA	-19	20065	combination_of_known_splicesites	TRUE	canonical	1	1	junction_3	2.24148046921617	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCTAATAAAAAAAACCCAG	NA	False	NA	NA	False	NA	NA	NA	56091141	55889561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_55891267_55893030_55893200_55895388_55895497_55898458_55898590_55899754_55899936_55907907_55908062_55910144_55910363_55911954_55912972_55915656_55915850_55916637_55916762_55916982_55917065_55926786_55926896_55937303_55937397_55938873_55938972_55939062_55939126_55939911_55939992_55943301_55943471_55944559_55944713_55948274_55948384_55965370_55965505_55966053_55966252_55987279_55987427_55989792_55989913_55992662_55992790_55993583_55993706_55994395_55994492_55994817_55994919_55998309_55998542_56090392
ENSMUSG00000027803.15_0	chr3	-	4672	7	FSM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	23	2	23	-2	multi-exon	FALSE	canonical	3	192	junction_3	19.06494747494	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTGGGCCTTTGTTTCTG	NA	False	NA	-8	True	AATAAA	-15	NA	57483226	57363071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243_57482679_57483021
ENSMUSG00000027803.15_2	chr3	-	2379	1	ISM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	117800	1	117800	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGGCCTTTGTTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	57365449	57363070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_57363100_57365400
ENSMUSG00000027803.15_4	chr3	-	4241	6	ISM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	798	1	798	-1	3prime_fragment	TRUE	canonical	3	192	junction_3	17.8392824967822	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGGCCTTTGTTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	57482451	57363070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243
ENSMUSG00000027804.14_0	chr3	+	1355	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	33	364	33	10	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	1786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAAATGTTTGTCTGC	NA	False	NA	26	True	AATAAA	-25	NA	79498704	79510593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
ENSMUSG00000027804.14_2	chr3	+	3714	9	FSM	ENSMUSG00000027804.14	ENSMUST00000161460.8	3777	9	59	4	36	-4	multi-exon	FALSE	canonical	3	2177	junction_4	229.457478359281	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTGAATCTCATTTTA	NA	False	NA	12	True	AATAAA	-11	NA	79498707	79510579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_79498865_79500916_79501058_79502508_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
ENSMUSG00000027805.17_0	chr3	-	1789	3	FSM	ENSMUSG00000027805.17	ENSMUST00000066882.10	2342	3	543	10	13	0	multi-exon	FALSE	canonical	3	22	junction_1	7	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTCCATTGGACTCCT	NA	False	NA	-6	True	AATAAA	-13	NA	57754957	57749325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_57750736_57752594_57752788_57754771
ENSMUSG00000027805.17_1	chr3	-	3266	1	NIC	ENSMUSG00000027805.17	novel	2342	3	NA	NA	708	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTCCATTGGACTCCT	NA	False	NA	-6	True	AATAAA	-13	NA	57752591	57749325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_57749300_57752600
ENSMUSG00000027806.10_0	chr3	+	4646	3	FSM	ENSMUSG00000027806.10	ENSMUST00000199164.2	4659	3	10	3	10	-3	multi-exon	FALSE	canonical	3	95	junction_1	10.5	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTGGCTCTATATGT	NA	False	NA	15	True	ATTAAA	-15	NA	58322150	58369138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_58325035_58366751_58366804_58367428
ENSMUSG00000027806.10_1	chr3	+	4775	4	NIC	ENSMUSG00000027806.10	novel	715	5	NA	NA	40	-3	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	51.1881062574327	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTGGCTCTATATGT	NA	False	NA	15	True	ATTAAA	-15	NA	58322180	58369138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_58325035_58344737_58344897_58366751_58366804_58367428
ENSMUSG00000027806.10_11	chr3	+	598	1	ISM	ENSMUSG00000027806.10	ENSMUST00000099090.7	9799	4	46405	5066	43636	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTGGCTCTATATGT	NA	False	NA	15	True	ATTAAA	-15	NA	58368540	58369138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_58368500_58369100
ENSMUSG00000027806.10_3	chr3	+	4726	4	FSM	ENSMUSG00000027806.10	ENSMUST00000099090.7	9799	4	7	5066	2	-3	multi-exon	FALSE	canonical	3	31	junction_2	37.7447568102732	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTGGCTCTATATGT	NA	False	NA	15	True	ATTAAA	-15	NA	58322142	58369138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_58325035_58335648_58335721_58366751_58366804_58367428
ENSMUSG00000027808.9_0	chr3	-	1016	1	ISM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	2899	2161	2899	-2161	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAAATGATTTTGCAG	NA	False	NA	9	True	AATAAA	-27	NA	58430414	58429398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_58429400_58430400
ENSMUSG00000027808.9_1	chr3	-	2321	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	129	2161	129	-2161	multi-exon	FALSE	canonical	3	847	junction_1	36.5	1131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAAATGATTTTGCAG	NA	False	NA	9	True	AATAAA	-27	NA	58433184	58429398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_58431290_58432503_58432580_58432830
ENSMUSG00000027809.15_0	chr3	-	2224	13	FSM	ENSMUSG00000027809.15	ENSMUST00000029386.14	2377	13	131	22	7	-7	multi-exon	FALSE	canonical	3	73	junction_10	10.8790701195767	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACGAGAGCATTTAT	3715	False	NA	-22	True	AATAAA	-8	NA	79536039	79511116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535824
ENSMUSG00000027810.15_0	chr3	+	2075	14	FSM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	222	2	0	-2	multi-exon	TRUE	canonical	3	611	junction_6	73.3195163601748	775	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTGCCTTCAAGTTTG	NA	False	NA	3	True	AATAAA	-14	NA	58433463	58464920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
ENSMUSG00000027811.10_0	chr3	+	1937	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	24	9	24	-9	multi-exon	FALSE	canonical	3	150	junction_1	0	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTAAATTTCCGTTTCT	4393	False	NA	NA	False	AATAAA	-5	NA	79536409	79540118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_79536664_79538435
ENSMUSG00000027811.10_3	chr3	+	1529	1	ISM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	2191	22	2191	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAATATTACAAGTA	6560	False	NA	NA	False	TTTAAA	-8	NA	79538576	79540105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_79538600_79540100
ENSMUSG00000027820.13_19	chr3	+	4304	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	31	613	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTGTGTGGTTACAAACA	NA	False	NA	15	True	CATAAA	-19	NA	63202899	63289657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
ENSMUSG00000027820.13_54	chr3	+	4340	23	FSM	ENSMUSG00000027820.13	ENSMUST00000029400.7	3782	23	116	-674	116	674	multi-exon	FALSE	canonical	3	117	junction_1	72.8286793023574	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATACTTATATGACTGT	NA	False	NA	7	True	TTTAAA	-19	NA	63203631	63289718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
ENSMUSG00000027820.13_91	chr3	+	2316	1	ISM	ENSMUSG00000027820.13	ENSMUST00000194134.6	8039	23	85524	2319	81236	2088	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTTGTGCTTTGCAT	NA	False	NA	17	True	NA	NA	NA	63288816	63291132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_63288800_63291100
ENSMUSG00000027822.17_0	chr3	-	2968	6	FSM	ENSMUSG00000027822.17	ENSMUST00000029402.15	3150	6	171	11	69	-11	multi-exon	FALSE	canonical	3	46	junction_5	11.3666177907063	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACACTATAAATCTCAAAGC	NA	False	NA	NA	False	AATAAA	-13	NA	63872018	63849761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_63850838_63851986_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
ENSMUSG00000027823.10_1	chr3	+	2227	16	FSM	ENSMUSG00000027823.10	ENSMUST00000029405.8	8105	16	47	5831	47	-5831	multi-exon	FALSE	canonical	3	954	junction_10	99.4709114375767	1498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAACTGTGTGTAACTGAG	NA	False	NA	11	True	AATAAA	-11	NA	63883573	63924169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
ENSMUSG00000027823.10_48	chr3	+	3279	1	ISM	ENSMUSG00000027823.10	ENSMUST00000029405.8	8105	16	42155	1040	42155	-1040	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGATGATTTCATAATT	NA	False	NA	10	True	AGTAAA	-14	NA	63925681	63928960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_63925700_63929000
ENSMUSG00000027828.13_1	chr3	-	2909	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	39	9	-31	-9	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	1103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATGTGTTTTGTTTTTC	2755	False	NA	-10	True	ATTAAA	-11	NA	65300005	65287084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
ENSMUSG00000027828.13_2	chr3	-	1670	1	ISM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	11290	9	2048	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATGTGTTTTGTTTTTC	7158	False	NA	-10	True	ATTAAA	-11	NA	65288754	65287084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_65287100_65288800
ENSMUSG00000027829.16_1	chr3	-	2121	11	FSM	ENSMUSG00000027829.16	ENSMUST00000029416.14	2169	11	43	5	-7	-5	multi-exon	FALSE	canonical	3	90	junction_8	39.2388837761728	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGTTTCAAATATCT	NA	False	NA	NA	False	AATAAA	-18	NA	65865627	65853576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65864273_65864384_65864921_65864997_65865228
ENSMUSG00000027829.16_12	chr3	-	2267	12	FSM	ENSMUSG00000027829.16	ENSMUST00000129002.8	2229	12	-41	3	-4	-3	multi-exon	FALSE	canonical	3	27	junction_8	57.4382888393569	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGTTTCAAATATCTTA	NA	False	NA	NA	False	AATAAA	-20	NA	65865624	65853574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65862550_65862698_65864273_65864384_65864921_65864997_65865228
ENSMUSG00000027829.16_16	chr3	-	5816	11	NIC	ENSMUSG00000027829.16	novel	2229	12	NA	NA	2	-5	intron_retention	FALSE	canonical	3	98	junction_8	37.3739213891184	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGTTTCAAATATCT	NA	False	NA	NA	False	AATAAA	-18	NA	65865600	65853576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65862698_65864273_65864384_65864921_65864997_65865228
ENSMUSG00000027829.16_20	chr3	-	2804	6	ISM	ENSMUSG00000027829.16	ENSMUST00000135719.8	1981	12	7789	-39	735	-5	3prime_fragment	FALSE	canonical	3	188	junction_4	11.47170431976	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGTTTCAAATATCT	NA	False	NA	NA	False	AATAAA	-18	NA	65857664	65853576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111
ENSMUSG00000027829.16_21	chr3	-	504	1	ISM	ENSMUSG00000027829.16	ENSMUST00000129002.8	2229	12	11503	5	1339	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGTTTCAAATATCT	NA	False	NA	NA	False	AATAAA	-18	NA	65854080	65853576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_65853600_65854100
ENSMUSG00000027829.16_6	chr3	-	2190	12	FSM	ENSMUSG00000027829.16	ENSMUST00000135719.8	1981	12	-170	-39	-3	-5	multi-exon	FALSE	canonical	3	56	junction_8	51.1618724254952	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGTTTCAAATATCT	NA	False	NA	NA	False	AATAAA	-18	NA	65865623	65853576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65862624_65862698_65864273_65864384_65864921_65864997_65865228
ENSMUSG00000027829.16_9	chr3	-	3856	11	NIC	ENSMUSG00000027829.16	novel	1981	12	NA	NA	2	-5	intron_retention	FALSE	canonical	3	56	junction_7	53.5545516272893	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGTTTCAAATATCT	NA	False	NA	NA	False	AATAAA	-18	NA	65865600	65853576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65857966_65858854_65858976_65862624_65862698_65864273_65864384_65864921_65864997_65865228
ENSMUSG00000027834.16_0	chr3	+	2942	9	FSM	ENSMUSG00000027834.16	ENSMUST00000029423.9	4091	9	0	1149	0	-1149	multi-exon	FALSE	canonical	3	8	junction_2	2.1650635094611	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATGTGATTATGTGATG	NA	False	NA	1	True	AATAAA	-12	NA	75464853	75549653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_75464950_75520386_75520655_75521760_75521992_75523874_75524070_75526425_75526631_75531165_75531264_75545224_75545312_75547555_75547646_75547981
ENSMUSG00000027835.12_0	chr3	-	1249	8	FSM	ENSMUSG00000027835.12	ENSMUST00000161137.8	1927	8	61	617	16	169	multi-exon	FALSE	canonical	3	1188	junction_3	125.646735098117	659	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAAGATGCATATATA	NA	False	NA	11	True	AATAAA	-31	NA	75464102	75424413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
ENSMUSG00000027845.16_0	chr3	-	2238	4	FSM	ENSMUSG00000027845.16	ENSMUST00000029435.15	4345	4	70	2037	4	243	multi-exon	FALSE	canonical	3	65	junction_3	4.71404520791032	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCAAAAAGAACCAGTATA	NA	False	NA	NA	False	AATAGA	-6	NA	103716690	103709957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_103711372_103714709_103714893_103715387_103715554_103716215
ENSMUSG00000027845.16_1	chr3	-	2945	1	ISM	ENSMUSG00000027845.16	ENSMUST00000063502.13	4113	3	5823	6	4081	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAACATTTGTATACTGT	NA	False	NA	-7	True	AATAAA	-9	NA	103710871	103707926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_103707900_103710900
ENSMUSG00000027845.16_2	chr3	-	1953	3	FSM	ENSMUSG00000027845.16	ENSMUST00000063502.13	4113	3	11	2149	11	131	multi-exon	FALSE	canonical	3	26	junction_2	24.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATTTAATTTGTTCCAC	NA	False	NA	NA	False	NA	NA	NA	103716683	103710069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_103711372_103714709_103714893_103716215
ENSMUSG00000027845.16_3	chr3	-	5566	3	FSM	ENSMUSG00000027845.16	ENSMUST00000106832.2	2299	3	25	-3292	14	243	multi-exon	FALSE	canonical	3	65	junction_2	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCAAAAAGAACCAGTATA	NA	False	NA	NA	False	AATAGA	-6	NA	103716680	103709957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_103714893_103715387_103715554_103716215
ENSMUSG00000027848.13_0	chr3	-	1676	3	FSM	ENSMUSG00000027848.13	ENSMUST00000029440.10	5465	3	53	3736	20	-1701	multi-exon	FALSE	canonical	0	0	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTCCTCTCTGGTGTGT	802	False	NA	NA	False	ATTAAA	-11	NA	103645264	103642716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_103643980_103644267_103644554_103645137
ENSMUSG00000027852.15_1	chr3	+	4395	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	55	20	-8	-12	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	1058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCTTTGCTTAACTGTA	NA	False	NA	6	True	AATAAA	-8	NA	102965655	102975210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ENSMUSG00000027852.15_38	chr3	+	2533	1	ISM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	7086	11	6383	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAACTGTATTTTCCCTA	NA	False	NA	15	True	AATAAA	-17	NA	102972686	102975219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_102972700_102975200
ENSMUSG00000027852.15_7	chr3	+	4357	6	FSM	ENSMUSG00000027852.15	ENSMUST00000200069.5	831	6	-27	-3499	-8	-8	multi-exon	FALSE	canonical	3	47	junction_5	301.169453962383	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGCTTAACTGTATTTT	NA	False	NA	10	True	AATAAA	-12	NA	102965655	102975214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971549
ENSMUSG00000027854.13_0	chr3	+	2360	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	33	4982	11	1283	multi-exon	FALSE	canonical	3	364	junction_4	22.0609949911603	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGATTTGCTCATTTTAC	NA	False	NA	14	True	AATAAA	-11	NA	102903056	102910793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
ENSMUSG00000027854.13_17	chr3	+	1355	1	ISM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	6415	4982	5395	1283	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGATTTGCTCATTTTAC	NA	False	NA	14	True	AATAAA	-11	NA	102909438	102910793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_102909400_102910800
ENSMUSG00000027854.13_18	chr3	+	3624	1	ISM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	9115	13	8095	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACATGAAAATCTTGTG	NA	False	NA	-4	True	NA	NA	NA	102912138	102915762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_102912100_102915800
ENSMUSG00000027855.14_1	chr3	-	3268	32	NIC	ENSMUSG00000027855.14	novel	3437	33	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	64	junction_8	14.4403037547212	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATATTTCTCATTGATT	NA	False	NA	-4	True	ATTAAA	-12	NA	102843414	102725816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
ENSMUSG00000027855.14_10	chr3	-	3148	31	NIC	ENSMUSG00000027855.14	novel	3437	33	NA	NA	2	-5	combination_of_known_splicesites	FALSE	canonical	3	39	junction_8	16.640279110907	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCAAATATTTCTCATTG	NA	False	NA	-7	True	ATTAAA	-9	NA	102843414	102725819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
ENSMUSG00000027855.14_11	chr3	-	3259	32	NIC	ENSMUSG00000027855.14	novel	3189	33	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	3	35	junction_31	16.9376649901153	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCAAATATTTCTCATTG	NA	False	NA	-7	True	ATTAAA	-9	NA	102843414	102725819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842976_102843301
ENSMUSG00000027855.14_13	chr3	-	3087	31	NIC	ENSMUSG00000027855.14	novel	3437	33	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	3	16	junction_3	19.5058110999432	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCAAATATTTCTCATTG	NA	False	NA	-7	True	ATTAAA	-9	NA	102843416	102725819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
ENSMUSG00000027855.14_17	chr3	-	3418	33	FSM	ENSMUSG00000027855.14	ENSMUST00000029448.11	3437	33	19	0	9	0	multi-exon	TRUE	canonical	3	8	junction_28	23.7190382064176	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTCTCATTGATTTT	NA	False	NA	-2	True	ATTAAA	-14	NA	102843397	102725814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102839958_102840124_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
ENSMUSG00000027855.14_19	chr3	-	3424	33	FSM	ENSMUSG00000027855.14	ENSMUST00000196988.5	3189	33	2	-237	2	-5	multi-exon	FALSE	canonical	3	8	junction_28	25.0723951787618	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCAAATATTTCTCATTG	NA	False	NA	-7	True	ATTAAA	-9	NA	102843414	102725819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102839958_102840124_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842976_102843301
ENSMUSG00000027855.14_5	chr3	-	3145	31	NIC	ENSMUSG00000027855.14	novel	3189	33	NA	NA	2	-2	combination_of_known_splicesites	FALSE	canonical	3	35	junction_30	18.8657243580933	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATATTTCTCATTGATT	NA	False	NA	-4	True	ATTAAA	-12	NA	102843414	102725816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842976_102843301
ENSMUSG00000027858.14_0	chr3	+	3981	8	FSM	ENSMUSG00000027858.14	ENSMUST00000029451.12	4484	8	419	84	-9	-84	multi-exon	FALSE	canonical	3	42	junction_1	8.2065180664829	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAACAAAAAAAAATTAG	NA	False	NA	NA	False	NA	NA	NA	102642263	102679524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_102642382_102657073_102657177_102664608_102664707_102665472_102665548_102666625_102666725_102668212_102668285_102672500_102672585_102676192
ENSMUSG00000027858.14_9	chr3	+	2241	1	ISM	ENSMUSG00000027858.14	ENSMUST00000029451.12	4484	8	35457	66	10676	-66	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTAAAGAAATTTAAATTG	NA	False	NA	NA	False	ATTAAA	-16	NA	102677301	102679542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_102677300_102679500
ENSMUSG00000027860.16_0	chr3	-	1971	1	ISM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	46823	2317	8070	817	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTCATAGCCTACTCTTT	NA	False	NA	-6	True	NA	NA	NA	102065186	102063215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_102063200_102065200
ENSMUSG00000027860.16_1	chr3	-	3317	8	FSM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	80	3134	80	0	multi-exon	FALSE	canonical	3	72	junction_4	79.9721890434929	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	102111929	102064032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102074153_102074288_102091266_102091875_102096724_102096864_102104107_102104293_102111827
ENSMUSG00000027860.16_10	chr3	-	2017	2	ISM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	3396	-1463	2406	0	3prime_fragment	FALSE	canonical	3	166	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	102070850	102064032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_102065814_102070614
ENSMUSG00000027860.16_11	chr3	-	2231	3	ISM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	1361	-1463	371	0	3prime_fragment	FALSE	canonical	3	166	junction_1	75	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	102072885	102064032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_102065814_102070614_102070850_102072670
ENSMUSG00000027860.16_32	chr3	-	654	3	FSM	ENSMUSG00000027860.16	ENSMUST00000162361.2	472	3	2	-184	2	7	multi-exon	FALSE	canonical	3	141	junction_2	87.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTACTTGTGTGTTTCTGT	NA	False	NA	-4	True	NA	NA	NA	102073254	102070494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_102070850_102072670_102072804_102073088
ENSMUSG00000027860.16_36	chr3	-	1848	7	ISM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	54	9430	54	173	5prime_fragment	FALSE	canonical	3	72	junction_3	85.9348913745491	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAATGAGCCGTCTCTCT	NA	False	NA	-15	True	NA	NA	NA	102111955	102070328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_102070850_102072670_102072804_102074153_102074288_102091266_102091875_102096724_102096864_102104107_102104293_102111827
ENSMUSG00000027860.16_39	chr3	-	1235	3	FSM	ENSMUSG00000027860.16	ENSMUST00000160226.8	617	3	-617	-1	-617	1	multi-exon	FALSE	canonical	3	188	junction_2	64	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCTATGTACTTGTGTGT	NA	False	NA	-10	True	NA	NA	NA	102074906	102070500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_102070850_102072670_102072804_102074153
ENSMUSG00000027860.16_4	chr3	-	2316	4	ISM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	991	-1463	1	0	3prime_fragment	FALSE	canonical	3	141	junction_3	77.2801541291309	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	102073255	102064032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088
ENSMUSG00000027860.16_7	chr3	-	2927	4	ISM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	37078	3134	-642	0	3prime_fragment	FALSE	canonical	3	166	junction_1	66.1379030679248	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	102074931	102064032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_102065814_102070614_102070850_102072670_102072804_102074153
ENSMUSG00000027863.9_1	chr3	-	1060	5	FSM	ENSMUSG00000027863.9	ENSMUST00000029456.5	1153	5	84	9	24	0	multi-exon	FALSE	canonical	2	4	junction_2	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGTGAGCATGCCCACT	NA	False	NA	NA	False	AATAAA	-22	NA	101195171	101183223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_101183590_101187103_101187227_101190346_101190578_101194722_101195032_101195140
ENSMUSG00000027864.10_12	chr3	-	3463	2	ISM	ENSMUSG00000027864.10	ENSMUST00000102694.4	5902	9	64659	4	27830	-4	3prime_fragment	FALSE	canonical	3	85	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAGACTTGTGTGAGGA	NA	False	NA	-7	True	ATTAAA	-14	NA	100952935	100947551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_100950839_100952759
ENSMUSG00000027864.10_3	chr3	-	1960	1	ISM	ENSMUSG00000027864.10	ENSMUST00000102694.4	5902	9	68083	4	31254	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAGACTTGTGTGAGGA	NA	False	NA	-7	True	ATTAAA	-14	NA	100949511	100947551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_100947600_100949500
ENSMUSG00000027864.10_4	chr3	-	6044	9	FSM	ENSMUSG00000027864.10	ENSMUST00000102694.4	5902	9	-151	9	-151	-9	multi-exon	FALSE	canonical	3	82	junction_8	11.5515150521479	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTAAATCAGACTTGTGT	4630	False	NA	-12	True	ATTAAA	-9	NA	101017745	100947556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_100950839_100952759_100953066_100957405_100957514_100963551_100963972_100967952_100968379_100980125_100980507_100984358_100984773_100987443_100987813_101017407
ENSMUSG00000027864.10_7	chr3	-	4315	5	ISM	ENSMUSG00000027864.10	ENSMUST00000102694.4	5902	9	49448	4	12619	-4	3prime_fragment	FALSE	canonical	3	85	junction_1	11.6699400169838	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAGACTTGTGTGAGGA	1535	False	NA	-7	True	ATTAAA	-14	NA	100968146	100947551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_100950839_100952759_100953066_100957405_100957514_100963551_100963972_100967952
ENSMUSG00000027864.10_8	chr3	-	4713	6	ISM	ENSMUSG00000027864.10	ENSMUST00000102694.4	5902	9	37303	4	474	-4	3prime_fragment	FALSE	canonical	3	85	junction_1	12.0896650077659	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAGACTTGTGTGAGGA	NA	False	NA	-7	True	ATTAAA	-14	NA	100980291	100947551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_100950839_100952759_100953066_100957405_100957514_100963551_100963972_100967952_100968379_100980125
ENSMUSG00000027864.10_9	chr3	-	3889	4	ISM	ENSMUSG00000027864.10	ENSMUST00000102694.4	5902	9	53855	4	17026	-4	3prime_fragment	FALSE	canonical	3	85	junction_1	4.10960933531265	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAGACTTGTGTGAGGA	5942	False	NA	-7	True	ATTAAA	-14	NA	100963739	100947551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_100950839_100952759_100953066_100957405_100957514_100963551
ENSMUSG00000027865.11_1	chr3	+	2571	14	FSM	ENSMUSG00000027865.11	ENSMUST00000029459.10	3008	14	103	334	-34	-8	multi-exon	FALSE	canonical	3	84	junction_11	11.7054581917706	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCACATTGCTGTCTTCT	NA	False	NA	14	True	AGTAAA	-25	NA	100069799	100113963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289_100109434_100113087
ENSMUSG00000027865.11_7	chr3	+	2509	14	NIC	ENSMUSG00000027865.11	novel	3008	14	NA	NA	-19	-18	combination_of_known_splicesites	FALSE	canonical	1	6	junction_12	27.3565110755164	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCATCCCTGACCACATT	NA	False	NA	4	True	AGTAAA	-15	NA	100069814	100113953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109326_100109434_100113087
ENSMUSG00000027868.12_1	chr3	+	3531	8	FSM	ENSMUSG00000027868.12	ENSMUST00000029462.10	3566	8	35	0	35	0	multi-exon	FALSE	canonical	1	3	junction_1	3.73073281634303	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGTGTTTGTTCATA	NA	False	NA	NA	False	AATAAA	-15	NA	99161110	99261575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_99161402_99216145_99216360_99220328_99220431_99222059_99222232_99223506_99223675_99233699_99233765_99247865_99247964_99259154
ENSMUSG00000027878.12_0	chr3	+	4380	23	ISM	ENSMUSG00000027878.12	ENSMUST00000079812.8	10500	34	-11	18611	0	-18611	5prime_fragment	FALSE	canonical	2	4	junction_15	4.73600591913858	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCTTTATCATATTAAGC	NA	False	NA	NA	False	ATTAAA	-17	NA	97920842	98039066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_97921088_97955043_97955126_97978175_97978436_97979902_97980239_97989232_97989356_98005411_98005646_98006739_98006896_98007515_98007705_98008836_98008951_98009641_98009756_98011664_98011899_98014362_98014474_98018865_98019059_98020325_98020472_98022547_98022662_98024016_98024137_98024508_98024662_98028042_98028272_98029219_98029422_98031060_98031215_98031464_98031650_98033427_98033561_98038513
ENSMUSG00000027878.12_5	chr3	+	9317	34	FSM	ENSMUSG00000027878.12	ENSMUST00000079812.8	10500	34	-29	1212	-18	-1212	multi-exon	FALSE	canonical	2	4	junction_15	4.33979175423846	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGCCCTTCGCCTCATT	NA	False	NA	NA	False	NA	NA	NA	97920824	98056465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_97921088_97955043_97955126_97978175_97978436_97979902_97980239_97989232_97989356_98005411_98005646_98006739_98006896_98007515_98007705_98008836_98008951_98009641_98009756_98011664_98011899_98014362_98014474_98018865_98019059_98020325_98020472_98022547_98022662_98024016_98024137_98024508_98024662_98028042_98028272_98029219_98029422_98031060_98031215_98031464_98031650_98033427_98033561_98038513_98038751_98041874_98041988_98042641_98043148_98044590_98044945_98045701_98045845_98045957_98046169_98046901_98046999_98048779_98048946_98050208_98050511_98051677_98051826_98052437_98052536_98053368
ENSMUSG00000027879.10_0	chr3	+	1408	5	FSM	ENSMUSG00000027879.10	ENSMUST00000029476.9	2810	5	32	1370	-3	55	multi-exon	FALSE	canonical	3	330	junction_4	8.07774721070176	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCATTTACTCTTTGTTG	NA	False	NA	30	True	ACTAAA	-19	NA	97808537	97829222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_97808737_97814536_97814647_97819894_97820056_97821815_97821963_97828431
ENSMUSG00000027879.10_1	chr3	+	2762	5	FSM	ENSMUSG00000027879.10	ENSMUST00000130778.2	1355	5	6	-1413	-3	-12	multi-exon	FALSE	canonical	3	31	junction_1	133.810500335362	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGAATGTTACCTCCAGT	NA	False	NA	6	True	AATAAA	-5	NA	97808537	97830580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_97808737_97814540_97814647_97819894_97820056_97821815_97821963_97828431
ENSMUSG00000027881.15_0	chr3	-	1554	1	ISM	ENSMUSG00000027881.15	ENSMUST00000129273.8	3050	7	7336	2	1225	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGGGTGTTGGTTTCC	6699	False	NA	-9	True	AATAAA	-18	NA	108811676	108810122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_108810100_108811700
ENSMUSG00000027881.15_10	chr3	-	3065	7	FSM	ENSMUSG00000027881.15	ENSMUST00000129273.8	3050	7	-18	3	-4	-1	multi-exon	FALSE	canonical	3	28	junction_5	171.074707527313	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCCTGGGTGTTGGTTTC	6863	False	NA	-10	True	AATAAA	-17	NA	108819030	108810123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108817658_108817712_108818479
ENSMUSG00000027881.15_16	chr3	-	1814	2	FSM	ENSMUSG00000027881.15	ENSMUST00000125208.2	977	2	251	-1088	251	-26	multi-exon	FALSE	canonical	3	536	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTGTAGCAGCCCTATAC	5725	False	NA	NA	False	ATTAAA	-14	NA	108812650	108810488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108812079_108812426
ENSMUSG00000027881.15_3	chr3	-	3014	6	FSM	ENSMUSG00000027881.15	ENSMUST00000029480.9	3026	6	7	5	7	-5	multi-exon	FALSE	canonical	3	234	junction_4	114.013332553697	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTATCCTGGGTGTTGG	6857	False	NA	-14	True	AATAAA	-13	NA	108819036	108810127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818479
ENSMUSG00000027881.15_5	chr3	-	2401	7	NIC	ENSMUSG00000027881.15	novel	2508	7	NA	NA	6	-350	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	165.490852382306	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGGATGTTTGTTTAGG	6856	False	NA	89	True	AATAGA	-23	NA	108819037	108810812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_108812079_108812426_108812651_108813233_108813305_108815102_108815164_108815247_108815400_108815651_108815721_108818479
ENSMUSG00000027882.19_1	chr3	-	2435	19	FSM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	-20	4	-5	-4	multi-exon	FALSE	canonical	1	38	junction_10	22.0233461984726	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTTTCTGAGTTTTTCT	NA	False	NA	-1	True	AATAAA	-13	NA	108747847	108700495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108701181_108702117_108702270_108704696_108704783_108706539_108706633_108707370_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108717192_108717318_108720193_108720285_108723640_108723796_108729103_108729205_108729830_108729910_108733321_108733399_108734341_108734424_108734888_108734939_108747735
ENSMUSG00000027882.19_7	chr3	-	347	1	ISM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	46985	4	4258	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTTTCTGAGTTTTTCT	3655	False	NA	-1	True	AATAAA	-13	NA	108700842	108700495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_108700500_108700800
ENSMUSG00000027883.16_1	chr3	-	3021	15	FSM	ENSMUSG00000027883.16	ENSMUST00000029482.16	3498	15	24	453	24	-453	multi-exon	FALSE	canonical	3	65	junction_14	18.8820182248852	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGGTTATCTGTCTCCT	NA	False	NA	-3	True	AATAAA	-15	NA	108629601	108586406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108587120_108589321_108589540_108589987_108590142_108594135_108594316_108597081_108597153_108604264_108604395_108604843_108604953_108606233_108606390_108607979_108608096_108608202_108608327_108609060_108609204_108609714_108609851_108610180_108610403_108618592_108618897_108629356
ENSMUSG00000027883.16_2	chr3	-	2636	14	NIC	ENSMUSG00000027883.16	novel	3498	15	NA	NA	-90	-455	combination_of_known_junctions	FALSE	canonical	3	40	junction_13	22.5826555427157	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTGGGTTATCTGTCTC	NA	False	NA	-5	True	AATAAA	-13	NA	108629522	108586408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_108587120_108589321_108589540_108589987_108590142_108594135_108594316_108597081_108597153_108604264_108604395_108604843_108604953_108606233_108606390_108607979_108608096_108608202_108608327_108609060_108609204_108609714_108609851_108610180_108610403_108629356
ENSMUSG00000027884.17_0	chr3	+	2009	12	FSM	ENSMUSG00000027884.17	ENSMUST00000106609.8	2043	12	28	6	-8	-2	multi-exon	TRUE	canonical	3	66	junction_1	36.8117839559091	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTATTTTGGTCTGGTGT	6624	False	NA	0	True	AATAAA	-12	NA	108561256	108586150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108561297_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ENSMUSG00000027884.17_1	chr3	+	2083	12	NIC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	-8	1	combination_of_known_junctions	FALSE	canonical	3	126	junction_1	23.1716555264122	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTGGTCTGGTGTGCA	6624	False	NA	3	True	AATAAA	-15	NA	108561256	108586153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ENSMUSG00000027884.17_15	chr3	+	2355	12	NIC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	51.8028685507149	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTATTTTGGTCTGGTGT	6643	False	NA	0	True	AATAAA	-12	NA	108561275	108586150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_108561662_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ENSMUSG00000027884.17_8	chr3	+	3641	11	NIC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	-8	-2	intron_retention	FALSE	canonical	3	126	junction_1	24.3014402865345	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTATTTTGGTCTGGTGT	6624	False	NA	0	True	AATAAA	-12	NA	108561256	108586150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000
ENSMUSG00000027889.18_1	chr3	-	3585	19	FSM	ENSMUSG00000027889.18	ENSMUST00000102637.8	3586	19	0	1	0	-1	multi-exon	FALSE	canonical	3	124	junction_18	33.5369705707258	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGAGGCATGTGAAGGTG	NA	False	NA	-9	True	AATAAA	-14	NA	107993967	107981380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533_107993669_107993754
ENSMUSG00000027889.18_23	chr3	-	3847	18	NIC	ENSMUSG00000027889.18	novel	3586	19	NA	NA	-1	0	intron_retention	TRUE	canonical	3	124	junction_17	33.4984377056561	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGCATGTGAAGGTGT	NA	False	NA	-8	True	AATAAA	-15	NA	107993968	107981379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533_107993669_107993754
ENSMUSG00000027889.18_6	chr3	-	3671	18	FSM	ENSMUSG00000027889.18	ENSMUST00000102638.8	3650	18	-24	3	0	-1	multi-exon	FALSE	canonical	3	198	junction_12	21.7907634157735	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGAGGCATGTGAAGGTG	NA	False	NA	-9	True	AATAAA	-14	NA	107993967	107981380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
ENSMUSG00000027890.18_0	chr3	-	1646	8	NNC	ENSMUSG00000027890.18	novel	1707	8	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	40.2329948866726	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952166	107947725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950850_107950918_107951210_107951276_107951668_107951745_107951952
ENSMUSG00000027890.18_1	chr3	-	1472	8	NNC	ENSMUSG00000027890.18	novel	1462	8	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	43.5819659389298	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952165	107947725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950850_107950918_107951210_107951276_107951668_107951745_107952125
ENSMUSG00000027890.18_2	chr3	-	1661	8	FSM	ENSMUSG00000027890.18	ENSMUST00000029489.15	1707	8	44	2	9	0	multi-exon	FALSE	canonical	3	51	junction_7	25.3175747621437	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952166	107947725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107951952
ENSMUSG00000027890.18_3	chr3	-	1488	8	FSM	ENSMUSG00000027890.18	ENSMUST00000106670.2	777	8	16	-727	9	0	multi-exon	FALSE	canonical	3	28	junction_7	31.2429583903252	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952166	107947725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107952125
ENSMUSG00000027890.18_4	chr3	-	1468	8	FSM	ENSMUSG00000027890.18	ENSMUST00000178808.8	1462	8	-6	0	1	0	multi-exon	FALSE	canonical	3	22	junction_7	32.937169624258	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952181	107947725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107952160
ENSMUSG00000027890.18_7	chr3	-	1454	8	NNC	ENSMUSG00000027890.18	novel	1462	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	44.6533130612605	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952182	107947725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950850_107950918_107951210_107951276_107951668_107951745_107952160
ENSMUSG00000027893.15_0	chr3	-	3809	17	FSM	ENSMUSG00000027893.15	ENSMUST00000029490.15	3863	17	39	15	-16	-15	multi-exon	FALSE	canonical	3	702	junction_5	41.8762593094226	1679	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATGATAAGACATTTAG	NA	False	NA	-19	True	ATTAAA	-8	NA	107603837	107570450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107572430_107572831_107572953_107574457_107574537_107574955_107575025_107575382_107575482_107575565_107575661_107575982_107576054_107576408_107576498_107577207_107577272_107577519_107577637_107578453_107578561_107579357_107579453_107580751_107580855_107581323_107581425_107582326_107582471_107585035_107585148_107603473
ENSMUSG00000027895.11_1	chr3	-	3017	4	FSM	ENSMUSG00000027895.11	ENSMUST00000009617.10	3667	4	647	3	647	-3	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCATCTGCCTCGCCT	NA	False	NA	NA	False	AATAAA	-27	NA	107366221	107345621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107346793_107352745_107352950_107354819_107355757_107365516
ENSMUSG00000027896.16_0	chr3	+	1884	6	FSM	ENSMUSG00000027896.16	ENSMUST00000153322.2	2531	6	-44	691	20	-691	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATGTTGGATGGTCAA	NA	False	NA	NA	False	AATAGA	-41	NA	107198565	107209178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_107198732_107199723_107199842_107205260_107205394_107206151_107206296_107206435_107206598_107208017
ENSMUSG00000027900.16_0	chr3	+	1775	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	64	1432	-2	-387	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACATTGTTCAGTAGTGT	NA	False	NA	3	True	AATAAA	-12	NA	106455177	106481774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027900.16_1	chr3	+	1675	10	NIC	ENSMUSG00000027900.16	novel	3271	9	NA	NA	2	-693	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	49.8998997994986	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATGTGTTGCTGTTGTT	NA	False	NA	NA	False	AATACA	-16	NA	106455148	106481468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_106455237_106457814_106457992_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027900.16_2	chr3	+	2155	9	NIC	ENSMUSG00000027900.16	novel	3271	9	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	37.0506410200957	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCTTGTCATGAAAATGA	NA	False	NA	NA	False	AATAAA	-14	NA	106455181	106482161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_106455237_106459471_106459597_106462482_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027900.16_3	chr3	+	1730	8	NIC	ENSMUSG00000027900.16	novel	3271	9	NA	NA	11	-384	combination_of_known_splicesites	FALSE	canonical	3	4	junction_3	42.6375325701836	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGTTCAGTAGTGTAAA	NA	False	NA	6	True	AATAAA	-15	NA	106455157	106481777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_106455237_106459471_106459597_106462479_106462625_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027901.13_0	chr3	+	2010	12	FSM	ENSMUSG00000027901.13	ENSMUST00000029508.11	4050	12	62	1978	43	10	multi-exon	FALSE	canonical	1	2	junction_1	1.52662323852242	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTAGGAGGCACTGCATG	NA	False	NA	NA	False	AATAAA	-23	NA	106389808	106408368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_106390030_106394188_106394365_106395166_106395280_106395887_106395958_106397650_106397729_106398541_106398683_106399744_106399894_106402146_106402325_106406133_106406176_106406536_106406622_106407070_106407311_106407851
ENSMUSG00000027905.16_0	chr3	-	2770	11	FSM	ENSMUSG00000027905.16	ENSMUST00000090680.11	2905	11	128	7	-2	-7	multi-exon	FALSE	canonical	3	276	junction_2	22.5302019520465	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTAATGTCAGTTTATTC	NA	False	NA	-7	True	AATAAA	-16	NA	105594762	105585592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_105587029_105587659_105587762_105587865_105587972_105588296_105588380_105590041_105590101_105590192_105590332_105590468_105590612_105590731_105590847_105591600_105591770_105593954_105594050_105594439
ENSMUSG00000027907.5_0	chr3	+	496	3	FSM	ENSMUSG00000027907.5	ENSMUST00000029515.5	511	3	9	6	9	-6	multi-exon	FALSE	canonical	3	443	junction_1	9.5	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTACACTGAGAGTCAG	NA	False	NA	1	True	AATAAA	-19	NA	93427803	93433588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_93427861_93431357_93431507_93433298
ENSMUSG00000027931.13_0	chr3	-	733	2	FSM	ENSMUSG00000027931.13	ENSMUST00000152510.2	949	2	334	-118	334	-1	multi-exon	FALSE	canonical	3	173	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGTCTCTTCTTGGGAG	NA	False	NA	-2	True	ATTAAA	-16	NA	90358754	90357898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90358490_90358612
ENSMUSG00000027931.13_1	chr3	-	4089	22	FSM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	-24	1	-24	-1	multi-exon	TRUE	canonical	3	14	junction_16	35.8067374802507	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGTCTCTTCTTGGGAG	NA	False	NA	-2	True	ATTAAA	-16	NA	90373197	90357898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90358490_90358612_90358705_90362124_90362224_90362398_90362574_90363007_90363077_90363202_90363327_90363469_90363617_90364215_90364385_90364627_90364784_90365378_90365536_90365628_90365701_90365938_90366044_90366351_90366430_90366629_90366705_90367239_90367361_90368396_90368482_90368671_90368808_90369472_90369565_90369874_90370011_90370441_90370556_90371117_90371318_90372101
ENSMUSG00000027931.13_3	chr3	-	831	4	NNC	ENSMUSG00000027931.13	novel	4066	22	NA	NA	2379	-1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	63.2824356884805	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGTCTCTTCTTGGGAG	NA	False	NA	-2	True	ATTAAA	-16	NA	90362404	90357898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_90358490_90358612_90358705_90362124_90362224_90362355
ENSMUSG00000027931.13_4	chr3	-	807	4	ISM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	10750	1	2360	-1	3prime_fragment	FALSE	canonical	3	31	junction_3	58.0191539254255	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGTCTCTTCTTGGGAG	NA	False	NA	-2	True	ATTAAA	-16	NA	90362423	90357898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_90358490_90358612_90358705_90362124_90362224_90362398
ENSMUSG00000027931.13_5	chr3	-	961	3	ISM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	10769	3	2379	-3	intron_retention	FALSE	canonical	3	97	junction_2	38	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACAGTCTCTTCTTGGG	NA	False	NA	-4	True	ATTAAA	-14	NA	90362404	90357900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_90358490_90358612_90358705_90362124
ENSMUSG00000027932.15_0	chr3	-	2185	10	FSM	ENSMUSG00000027932.15	ENSMUST00000029541.12	2259	10	73	1	73	-1	multi-exon	FALSE	canonical	3	73	junction_6	21.4101625806157	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGCCCATCTTCGAGAG	NA	False	NA	-18	True	AATAAA	-13	NA	90297161	90292546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90292841_90293556_90293688_90293786_90293885_90294054_90294254_90294370_90294462_90294561_90294757_90294942_90295068_90295634_90295794_90295996_90296207_90296478
ENSMUSG00000027932.15_3	chr3	-	2388	9	ISM	ENSMUSG00000027932.15	ENSMUST00000132041.2	2016	10	-121	-1	-121	-1	intron_retention	FALSE	canonical	3	73	junction_6	21.5895663458069	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGCCCATCTTCGAGAG	NA	False	NA	-18	True	AATAAA	-13	NA	90297092	90292546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_90292841_90293556_90293688_90293786_90293885_90294054_90294254_90294370_90294462_90294561_90294757_90294942_90295068_90295634_90295794_90295996
ENSMUSG00000027932.15_9	chr3	-	501	1	NIC	ENSMUSG00000027932.15	novel	2259	10	NA	NA	3241	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGCCCATCTTCGAGAG	NA	False	NA	-18	True	AATAAA	-13	NA	90293047	90292546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_90292500_90293000
ENSMUSG00000027933.12_1	chr3	-	4308	30	FSM	ENSMUSG00000027933.12	ENSMUST00000029542.12	4337	30	26	3	26	-3	multi-exon	FALSE	canonical	3	154	junction_21	22.3924035870797	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTGTGCCTGAGTTGA	NA	False	NA	-14	True	AATGAA	-13	NA	90340810	90298705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
ENSMUSG00000027933.12_2	chr3	-	4218	31	FSM	ENSMUSG00000027933.12	ENSMUST00000071488.8	4038	31	-191	11	35	-3	multi-exon	FALSE	canonical	3	31	junction_1	39.1651914615801	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTGTGCCTGAGTTGA	NA	False	NA	-14	True	AATGAA	-13	NA	90340801	90298705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90299219_90299299_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
ENSMUSG00000027935.15_1	chr3	+	1305	1	FSM	ENSMUSG00000027935.15	ENSMUST00000198809.2	762	1	-4	-539	-4	539	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90121012	90122317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90121000_90122300
ENSMUSG00000027935.15_4	chr3	+	1076	8	FSM	ENSMUSG00000027935.15	ENSMUST00000065418.7	1107	8	28	3	28	-3	multi-exon	FALSE	canonical	3	20	junction_1	3.88613443106727	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAATGTCCCATTTGCATT	NA	False	NA	3	True	ATTAAA	-15	NA	90128121	90133273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90128330_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
ENSMUSG00000027936.19_0	chr3	+	2530	13	NIC	ENSMUSG00000027936.19	novel	2747	14	NA	NA	7	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	36.1711786740032	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTTGTGTGCTTGGC	NA	False	NA	NA	False	AATAAA	-11	NA	90161609	90171424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_90161866_90164423_90164526_90164601_90164719_90165771_90165834_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170477_90170665_90170786
ENSMUSG00000027936.19_14	chr3	+	2666	15	NIC	ENSMUSG00000027936.19	novel	2747	14	NA	NA	7	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	35.6648228908645	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTTGTGTGCTTGGC	NA	False	NA	NA	False	AATAAA	-11	NA	90161609	90171424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_90161866_90164423_90164526_90164601_90164719_90165771_90165834_90166460_90166530_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170220_90170288_90170477_90170665_90170786
ENSMUSG00000027936.19_25	chr3	+	3718	14	NIC	ENSMUSG00000027936.19	novel	2747	14	NA	NA	8	-3	intron_retention	FALSE	canonical	3	17	junction_11	29.6114882551754	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTTGTGTGCTTGGC	NA	False	NA	NA	False	AATAAA	-11	NA	90161610	90171424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_90161866_90164423_90164526_90164601_90165834_90166460_90166530_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170220_90170288_90170477_90170665_90170786
ENSMUSG00000027936.19_3	chr3	+	2600	14	FSM	ENSMUSG00000027936.19	ENSMUST00000029545.15	2747	14	139	8	6	-3	multi-exon	FALSE	canonical	0	0	junction_3	29.1612533719806	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTTGTGTGCTTGGC	NA	False	NA	NA	False	AATAAA	-11	NA	90161608	90171424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90161866_90164423_90164526_90164601_90164719_90165771_90165834_90166460_90166530_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170477_90170665_90170786
ENSMUSG00000027936.19_8	chr3	+	2270	10	FSM	ENSMUSG00000027936.19	ENSMUST00000136970.8	2214	10	-60	4	-15	-4	multi-exon	TRUE	canonical	3	9	junction_1	29.0814097846327	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACCTTTTGTGTGCTTGG	NA	False	NA	NA	False	AATAAA	-10	NA	90161587	90171423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90161866_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170477_90170665_90170786
ENSMUSG00000027937.16_0	chr3	+	1062	5	FSM	ENSMUSG00000027937.16	ENSMUST00000029546.15	1101	5	39	0	2	0	multi-exon	FALSE	canonical	3	314	junction_4	18.2260116317312	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138942	90143145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90139348_90139501_90139540_90139735_90139819_90141229_90141310_90142689
ENSMUSG00000027937.16_1	chr3	+	1272	4	NIC	ENSMUSG00000027937.16	novel	1101	5	NA	NA	10	0	intron_retention	FALSE	canonical	3	314	junction_3	19.2527054375915	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138928	90143145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_90139348_90139501_90139819_90141229_90141310_90142689
ENSMUSG00000027937.16_2	chr3	+	1370	3	NIC	ENSMUSG00000027937.16	novel	1101	5	NA	NA	44	0	intron_retention	FALSE	canonical	3	314	junction_2	23	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138984	90143145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_90139819_90141229_90141310_90142689
ENSMUSG00000027937.16_5	chr3	+	2838	2	NIC	ENSMUSG00000027937.16	novel	1101	5	NA	NA	9	0	intron_retention	FALSE	canonical	3	314	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138927	90143145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_90141310_90142689
ENSMUSG00000027938.12_0	chr3	-	1356	10	FSM	ENSMUSG00000027938.12	ENSMUST00000107369.2	1404	10	47	1	47	-1	multi-exon	TRUE	canonical	2	4	junction_7	1.89215404065849	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCCAAGTTTTTCACTAT	NA	False	NA	NA	False	AATAAA	-18	NA	90150403	90144877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90145229_90145356_90145454_90145618_90145704_90145789_90145859_90145951_90146059_90146190_90146287_90149238_90149361_90149517_90149753_90150028_90150144_90150324
ENSMUSG00000027939.12_0	chr3	+	2627	19	ISM	ENSMUSG00000027939.12	ENSMUST00000029548.9	5681	40	32788	22379	32786	-22379	internal_fragment	FALSE	canonical	0	0	junction_13	1.60727512683216	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCTTAGTACTAAGAGTC	NA	False	NA	NA	False	AATAAA	-19	NA	90044226	90096945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_90044309_90051465_90051665_90058409_90058556_90061775_90061998_90067136_90067311_90075040_90075234_90076600_90076690_90077296_90077402_90077865_90077968_90079355_90079485_90081636_90081765_90083144_90083278_90087456_90087520_90088677_90088858_90089189_90089271_90089786_90089919_90092731_90092891_90093338_90093431_90096727
ENSMUSG00000027940.19_1	chr3	+	2098	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	126	6	1	-1	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	3591	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGATCAGACCGGCTTGACT	NA	False	NA	12	True	AATAAA	-15	NA	89986972	90008202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
ENSMUSG00000027942.18_1	chr3	+	800	1	ISM	ENSMUSG00000027942.18	ENSMUST00000160640.8	2510	7	8825	903	2994	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCATGGATCATTTCTT	5500	False	NA	3	True	AATAAA	-13	NA	89968945	89969745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_89968900_89969700
ENSMUSG00000027944.14_0	chr3	-	1097	7	FSM	ENSMUSG00000027944.14	ENSMUST00000079724.9	1139	7	31	11	0	0	multi-exon	FALSE	canonical	3	1573	junction_5	145.593040126695	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTCTTAGTCTTGGTT	7221	False	NA	NA	False	AATAAA	-15	NA	89905973	89902763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905834
ENSMUSG00000027944.14_1	chr3	-	1091	7	FSM	ENSMUSG00000027944.14	ENSMUST00000197767.5	1092	7	-3	4	-3	0	multi-exon	FALSE	canonical	3	138	junction_5	640.345588118027	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTCTTAGTCTTGGTT	7218	False	NA	NA	False	AATAAA	-15	NA	89905976	89902763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904873_89905044_89905311_89905834
ENSMUSG00000027944.14_10	chr3	-	1271	6	FSM	ENSMUSG00000027944.14	ENSMUST00000199014.5	1280	6	10	-1	1	0	multi-exon	FALSE	canonical	3	1706	junction_4	119.761429517186	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7211	False	NA	NA	False	AATAAA	-16	NA	89905983	89902762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89905311_89905834
ENSMUSG00000027944.14_3	chr3	-	1197	7	NIC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	656.238629531125	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTCTTAGTCTTGGTT	7221	False	NA	NA	False	AATAAA	-15	NA	89905973	89902763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905411_89905834
ENSMUSG00000027944.14_6	chr3	-	1026	6	ISM	ENSMUSG00000027944.14	ENSMUST00000198782.2	855	7	318	-168	291	0	3prime_fragment	FALSE	canonical	3	1573	junction_5	159.470373424031	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTCTTAGTCTTGGTT	7816	False	NA	NA	False	AATAAA	-15	NA	89905378	89902763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044
ENSMUSG00000027947.12_12	chr3	-	3600	10	FSM	ENSMUSG00000027947.12	ENSMUST00000197679.5	8639	10	27	5012	-7	253	multi-exon	FALSE	canonical	2	3	junction_6	3.80058475033046	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTCCGGTTTCGTTCACTT	NA	False	NA	NA	False	NA	NA	NA	89820476	89776377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89778694_89784115_89784216_89785150_89785221_89786155_89786200_89793208_89793351_89793848_89794016_89794328_89794514_89796493_89796618_89797543_89797781_89820261
ENSMUSG00000027947.12_13	chr3	-	3328	10	FSM	ENSMUSG00000027947.12	ENSMUST00000029559.7	3343	10	15	0	15	0	multi-exon	FALSE	canonical	2	3	junction_6	3.80058475033046	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCAGGGGATCGGCGAC	NA	False	NA	NA	False	ATTAAA	-17	NA	89820454	89776630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89778694_89784115_89784216_89785150_89785221_89786155_89786203_89793208_89793351_89793848_89794016_89794328_89794514_89796493_89796618_89797543_89797781_89820261
ENSMUSG00000027947.12_4	chr3	-	436	1	ISM	ENSMUSG00000027947.12	ENSMUST00000197679.5	8639	10	45257	3445	45223	1820	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTGAGATGTTCTTCTGC	NA	False	NA	-8	True	AATAAA	-16	NA	89775246	89774810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89774800_89775200
ENSMUSG00000027951.17_0	chr3	+	4124	15	FSM	ENSMUSG00000027951.17	ENSMUST00000098924.9	5909	15	39	1746	39	294	multi-exon	FALSE	canonical	3	79	junction_7	20.181320925195	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGCAGGAGTTGACAACC	NA	False	NA	NA	False	CATAAA	-20	NA	89622367	89659007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89622458_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652909_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
ENSMUSG00000027951.17_1	chr3	+	3755	15	NIC	ENSMUSG00000027951.17	novel	5909	15	NA	NA	39	3	combination_of_known_junctions	FALSE	canonical	3	43	junction_7	26.0458778907919	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATGTAGCACAGACAGTT	NA	False	NA	23	True	ATTAAA	-23	NA	89622367	89658716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89622458_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652831_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
ENSMUSG00000027951.17_10	chr3	+	3803	15	FSM	ENSMUSG00000027951.17	ENSMUST00000107405.6	5871	15	24	2044	24	-4	multi-exon	FALSE	canonical	3	12	junction_1	32.9626411909864	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATTCCATATGTAGCACA	NA	False	NA	16	True	ATTAAA	-16	NA	89638078	89658709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89638146_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652909_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
ENSMUSG00000027951.17_11	chr3	+	4934	14	ISM	ENSMUSG00000027951.17	ENSMUST00000107405.6	5871	15	4936	4	-1902	-4	3prime_fragment	FALSE	canonical	3	79	junction_6	19.5605568585198	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGGACTGTTACAAAGTT	NA	False	NA	8	True	AATAAA	-12	NA	89642990	89660749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652909_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
ENSMUSG00000027951.17_14	chr3	+	5256	14	ISM	ENSMUSG00000027951.17	ENSMUST00000029563.14	3753	15	4534	-2034	-2304	-6	3prime_fragment	FALSE	canonical	3	43	junction_6	26.1744262920121	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATCAGGACTGTTACAAAG	NA	False	NA	6	True	AATAAA	-10	NA	89642588	89660747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652831_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
ENSMUSG00000027951.17_32	chr3	+	103	1	ISM	ENSMUSG00000027951.17	ENSMUST00000098924.9	5909	15	38321	1	7698	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACTGTTACAAAGTTTTA	NA	False	NA	11	True	AATAAA	-15	NA	89660649	89660752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_89660600_89660800
ENSMUSG00000027952.17_4	chr3	+	1129	5	FSM	ENSMUSG00000027952.17	ENSMUST00000029564.12	1194	5	60	5	60	-1	multi-exon	FALSE	canonical	3	519	junction_1	43.1878165690279	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCAGAGCTGGAGACTGA	200	False	NA	16	True	AATAAA	-15	NA	89366484	89376315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89375820
ENSMUSG00000027952.17_5	chr3	+	3571	4	NIC	ENSMUSG00000027952.17	novel	1156	5	NA	NA	33	0	intron_retention	FALSE	canonical	3	568	junction_1	30.8688984074406	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCTCAGAGCTGGAGACT	173	False	NA	14	True	AATAAA	-13	NA	89366457	89376313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89369253_89371602_89371756_89374853_89374984_89375820
ENSMUSG00000027953.14_0	chr3	-	978	6	FSM	ENSMUSG00000027953.14	ENSMUST00000029565.11	1022	6	43	1	-1	-1	multi-exon	FALSE	canonical	3	127	junction_5	11.5481600266016	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCAGAGTGATGTGTTC	NA	False	NA	-32	True	AATAAA	-16	NA	89177834	89175553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177692
ENSMUSG00000027953.14_1	chr3	-	1323	4	FSM	ENSMUSG00000027953.14	ENSMUST00000144777.8	1332	4	9	0	7	0	multi-exon	FALSE	canonical	3	133	junction_3	10.1434160364686	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGCAGAGTGATGTGTT	NA	False	NA	-33	True	AATAAA	-15	NA	89177823	89175554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133
ENSMUSG00000027953.14_16	chr3	-	2279	1	NIC	ENSMUSG00000027953.14	novel	1176	5	NA	NA	-1	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177831	89175552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89175600_89177800
ENSMUSG00000027953.14_2	chr3	-	1277	5	ISM	ENSMUSG00000027953.14	ENSMUST00000029565.11	1022	6	-9	0	-9	0	intron_retention	FALSE	canonical	3	133	junction_3	8.86002257333467	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177886	89175552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368
ENSMUSG00000027953.14_5	chr3	-	1081	5	FSM	ENSMUSG00000027953.14	ENSMUST00000132445.8	1086	5	2	3	2	-1	multi-exon	FALSE	canonical	3	127	junction_4	12.4373429638327	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGCAGAGTGATGTGT	NA	False	NA	-34	True	AATAAA	-14	NA	89177828	89175555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177447_89177692
ENSMUSG00000027953.14_6	chr3	-	1051	6	NIC	ENSMUSG00000027953.14	novel	1022	6	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	57.1195238075389	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGCAGAGTGATGTGTT	NA	False	NA	-33	True	AATAAA	-15	NA	89177821	89175554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89175906_89175979_89176100_89176356_89176606_89177133_89177258_89177368_89177447_89177692
ENSMUSG00000027953.14_7	chr3	-	884	6	NIC	ENSMUSG00000027953.14	novel	1022	6	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_5	58.1425833619388	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177869	89175552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177822
ENSMUSG00000027954.10_0	chr3	-	1473	5	FSM	ENSMUSG00000027954.10	ENSMUST00000029566.9	1480	5	4	3	0	0	multi-exon	FALSE	canonical	3	14	junction_2	2.77263412660235	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCTTTTCTGCCCCACC	1670	False	NA	NA	False	AATAAA	-18	NA	89186948	89179042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89179912_89180078_89180130_89180263_89180330_89183436_89183733_89186757
ENSMUSG00000027955.17_0	chr3	+	3847	5	FSM	ENSMUSG00000027955.17	ENSMUST00000118853.8	6729	5	-15	2897	-15	-2895	multi-exon	FALSE	canonical	0	0	junction_1	2.77263412660235	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTCTCATCTCCTTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	79791824	79850690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_79791998_79793294_79794438_79815895_79816111_79843901_79844129_79848601
ENSMUSG00000027955.17_4	chr3	+	2767	4	NIC	ENSMUSG00000027955.17	novel	6729	5	NA	NA	-82	-2899	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATACTTCTCATCTCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	79791757	79850686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_79791998_79815895_79816111_79843901_79844129_79848601
ENSMUSG00000027956.12_0	chr3	-	1819	4	ISM	ENSMUSG00000027956.12	ENSMUST00000168038.8	2220	12	19014	-568	19014	-1	3prime_fragment	FALSE	canonical	3	18	junction_3	4.24264068711928	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTTTCTTCTTTAGAT	7884	False	NA	NA	False	AATAAA	-16	NA	79730022	79719871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937
ENSMUSG00000027956.12_2	chr3	-	2797	12	FSM	ENSMUSG00000027956.12	ENSMUST00000029568.7	2898	12	99	2	99	-2	multi-exon	FALSE	canonical	0	0	junction_11	7.83085653358474	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTTTTCTTCTTTAGA	NA	False	NA	NA	False	AATAAA	-15	NA	79749887	79719872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79749694
ENSMUSG00000027956.12_6	chr3	-	2733	12	NIC	ENSMUSG00000027956.12	novel	2898	12	NA	NA	3	-12	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	3.82466981235684	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAAAAACTATTTCTTTT	NA	False	NA	NA	False	AATAAA	-5	NA	79750216	79719882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79750077
ENSMUSG00000027957.14_0	chr3	-	5037	8	FSM	ENSMUSG00000027957.14	ENSMUST00000029569.9	5725	8	426	262	7	-262	multi-exon	FALSE	canonical	3	122	junction_1	23.3779941878019	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATAACTACATATAGTT	2222	False	NA	-32	True	AATAGA	-21	NA	116505873	116463380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_116467368_116468819_116468954_116471511_116471631_116474753_116474926_116480710_116480834_116480919_116481075_116488078_116488284_116505731
ENSMUSG00000027957.14_2	chr3	-	2324	1	ISM	ENSMUSG00000027957.14	ENSMUST00000029569.9	5725	8	40550	307	4328	-307	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATTATTATCTATATTTA	NA	False	NA	10	True	GATAAA	-22	NA	116465749	116463425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_116463400_116465700
ENSMUSG00000027957.14_8	chr3	-	4838	7	NIC	ENSMUSG00000027957.14	novel	5725	8	NA	NA	3	-260	combination_of_known_splicesites	FALSE	canonical	2	3	junction_6	65.8088562091422	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAACTACATATAGTTTT	2218	False	NA	-30	True	AATAGA	-23	NA	116505877	116463378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_116467368_116468819_116468954_116471511_116471631_116474753_116474926_116480710_116480834_116480919_116481075_116505731
ENSMUSG00000027959.15_0	chr3	+	3331	14	FSM	ENSMUSG00000027959.15	ENSMUST00000198386.5	1894	14	26	-1463	0	1463	multi-exon	FALSE	canonical	3	39	junction_7	10.1538461538462	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCAATCCTGTCTCCGCAT	NA	False	NA	10	True	NA	NA	NA	116388656	116416714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031
ENSMUSG00000027959.15_23	chr3	+	1612	1	ISM	ENSMUSG00000027959.15	ENSMUST00000029571.13	4340	18	34315	66	3404	-66	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGCATGTTTAGGAAAT	NA	False	NA	17	True	AATAAA	-28	NA	116422975	116424587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_116423000_116424600
ENSMUSG00000027959.15_3	chr3	+	4181	17	FSM	ENSMUSG00000027959.15	ENSMUST00000198311.5	2404	17	0	-1777	0	-80	multi-exon	FALSE	canonical	3	24	junction_15	13.4290671213603	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGTTTTATATGCAAGAAG	NA	False	NA	3	True	AATAAA	-14	NA	116388656	116424573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031_116415158_116420721_116420817_116422166_116422262_116422356
ENSMUSG00000027963.15_0	chr3	+	2843	5	FSM	ENSMUSG00000027963.15	ENSMUST00000029575.12	3000	5	24	133	1	-76	multi-exon	FALSE	canonical	3	53	junction_4	7.08872343937891	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACATGCTTTGTCCACA	18	False	NA	22	True	ATTAAA	-10	NA	115801134	115822533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_115801532_115804270_115804346_115817655_115818084_115818973_115819045_115820661
ENSMUSG00000027963.15_1	chr3	+	2662	5	FSM	ENSMUSG00000027963.15	ENSMUST00000106502.2	2840	5	102	76	102	-76	multi-exon	FALSE	canonical	3	16	junction_1	20.597329924046	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACATGCTTTGTCCACA	154	False	NA	22	True	ATTAAA	-10	NA	115801970	115822533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_115802187_115804270_115804346_115817655_115818084_115818973_115819045_115820661
ENSMUSG00000027963.15_2	chr3	+	2756	4	FSM	ENSMUSG00000027963.15	ENSMUST00000106501.8	2887	4	24	107	17	-72	multi-exon	FALSE	canonical	0	0	junction_1	25.9786236911983	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCTTTGTCCACATTTG	34	False	NA	26	True	ATTAAA	-14	NA	115801150	115822537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_115801532_115817655_115818084_115818973_115819045_115820661
ENSMUSG00000027968.12_0	chr3	-	2038	13	FSM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	76	7	74	-7	multi-exon	FALSE	canonical	3	466	junction_6	145.639680948108	879	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATAATTGTTTTGGTTTT	NA	False	NA	-8	True	AATAAA	-10	NA	127346922	127330369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
ENSMUSG00000027981.15_1	chr3	-	653	1	NIC	ENSMUSG00000074264.13	novel	1568	4	NA	NA	647	-40413	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATTAATAATTTTATACAT	NA	False	NA	63	True	AATAAA	-8	NA	113399701	113399048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_113399000_113399700
ENSMUSG00000027981.15_2	chr3	-	3453	15	FSM	ENSMUSG00000027981.15	ENSMUST00000092154.10	3888	15	36	399	-34	-2	multi-exon	FALSE	canonical	3	32	junction_1	23.6233195061532	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTGTCTAATTTTTCAT	NA	False	NA	-3	True	AATAAA	-14	NA	113423762	113399114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_113400949_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
ENSMUSG00000027981.15_5	chr3	-	1802	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106536.8	1839	15	35	2	-35	-2	multi-exon	FALSE	canonical	3	86	junction_8	14.9497457489813	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTGTCTAATTTTTCAT	NA	False	NA	-3	True	AATAAA	-14	NA	113423763	113399114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_113399297_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
ENSMUSG00000027983.14_1	chr3	-	3398	5	FSM	ENSMUSG00000027983.14	ENSMUST00000106337.7	4378	5	46	934	22	-934	multi-exon	FALSE	canonical	1	2	junction_1	0.866025403784439	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAACCAGGTGTTGAGTA	NA	False	NA	NA	False	AATAAA	-32	NA	131096827	131083023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_131084957_131087165_131087334_131089036_131089199_131091434_131092071_131096328
ENSMUSG00000027983.14_2	chr3	-	1665	4	FSM	ENSMUSG00000027983.14	ENSMUST00000200236.2	1716	4	24	27	24	-27	multi-exon	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAATAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	131096825	131086963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_131087334_131089036_131089199_131091434_131092071_131096328
ENSMUSG00000027983.14_5	chr3	-	1257	2	ISM	ENSMUSG00000027983.14	ENSMUST00000200236.2	1716	4	31	4367	31	-3231	5prime_fragment	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGGAGTTCGAGAGGTGA	NA	False	NA	NA	False	AGTAAA	-13	NA	131096818	131091303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_131092071_131096328
ENSMUSG00000027984.9_0	chr3	-	1706	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	53	30	-24	-30	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	857	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCATAAAATCCTTAAG	NA	False	NA	NA	False	AATAAA	-17	NA	131065697	131027097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
ENSMUSG00000027985.15_0	chr3	+	3471	10	FSM	ENSMUSG00000027985.15	ENSMUST00000106341.9	3357	10	-147	33	-147	-33	multi-exon	FALSE	canonical	3	22	junction_9	8.71779788708135	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTATTAAGAATAAATTT	NA	False	NA	NA	False	AATAAA	-20	NA	130903972	131017972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_130905328_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_131016724
ENSMUSG00000027985.15_1	chr3	+	3516	11	FSM	ENSMUSG00000027985.15	ENSMUST00000066849.13	3398	11	-153	35	-153	-35	multi-exon	FALSE	canonical	3	14	junction_9	10.581115253129	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATTTTATTAAGAATAAAT	NA	False	NA	NA	False	AATAAA	-18	NA	130903966	131017970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_130905328_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_130998581_130998623_131016724
ENSMUSG00000027985.15_12	chr3	+	1571	3	ISM	ENSMUSG00000027985.15	ENSMUST00000106341.9	3357	10	89656	35	86271	-35	3prime_fragment	FALSE	canonical	3	22	junction_2	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATTTTATTAAGAATAAAT	NA	False	NA	NA	False	AATAAA	-18	NA	130993775	131017970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_130994052_130997904_130997954_131016724
ENSMUSG00000027985.15_13	chr3	+	1442	4	ISM	ENSMUSG00000027985.15	ENSMUST00000098611.4	2298	12	87498	37	86439	-37	3prime_fragment	FALSE	canonical	3	14	junction_2	10.8730042868667	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCATTTTATTAAGAATAA	NA	False	NA	NA	False	AATAAA	-16	NA	130993943	131017968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_130994052_130997904_130997954_130998581_130998623_131016724
ENSMUSG00000027985.15_2	chr3	+	3589	11	NIC	ENSMUSG00000027985.15	novel	3482	12	NA	NA	-183	-35	combination_of_known_junctions	TRUE	canonical	1	2	junction_6	15.8773423468791	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATTTTATTAAGAATAAAT	NA	False	NA	NA	False	AATAAA	-18	NA	130903936	131017970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_130905328_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130984671_130984756_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_131016724
ENSMUSG00000027985.15_5	chr3	+	3055	12	FSM	ENSMUSG00000027985.15	ENSMUST00000029611.14	3482	12	-160	587	-160	-587	multi-exon	FALSE	canonical	1	2	junction_6	15.8134789247173	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGCCTTTTACGTTT	NA	False	NA	NA	False	AATAAA	-10	NA	130903959	131017418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_130905328_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130984671_130984756_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_130998581_130998623_131016724
ENSMUSG00000027985.15_7	chr3	+	1987	8	ISM	ENSMUSG00000027985.15	ENSMUST00000066849.13	3398	11	74141	33	70756	-33	3prime_fragment	FALSE	canonical	3	14	junction_6	10.1820169606888	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTATTAAGAATAAATTT	NA	False	NA	NA	False	AATAAA	-20	NA	130978260	131017972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_130978425_130982983_130983075_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_130998581_130998623_131016724
ENSMUSG00000027993.17_0	chr3	-	2624	1	ISM	ENSMUSG00000027993.17	ENSMUST00000107692.8	7161	12	141744	3	27458	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGACTGAGTGTTTATTCA	NA	False	NA	-22	True	AATAAA	-18	NA	84070372	84067748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_84067700_84070400
ENSMUSG00000027993.17_1	chr3	-	6224	7	ISM	ENSMUSG00000027993.17	ENSMUST00000065380.13	4296	12	21559	-2891	269	-5	3prime_fragment	FALSE	canonical	3	56	junction_3	11.8801889247978	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGCAGACTGAGTGTTTA	NA	False	NA	-26	True	AATAAA	-14	NA	84098586	84067752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819
ENSMUSG00000027993.17_25	chr3	-	2921	3	FSM	ENSMUSG00000027993.17	ENSMUST00000140568.2	664	3	-707	-1550	318	1550	multi-exon	FALSE	canonical	3	70	junction_2	13	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84098537	84083007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_84085107_84085381_84085486_84097819
ENSMUSG00000027993.17_29	chr3	-	7316	12	FSM	ENSMUSG00000027993.17	ENSMUST00000107691.8	7428	12	106	6	106	-5	multi-exon	FALSE	canonical	3	5	junction_11	27.3305447747744	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGCAGACTGAGTGTTTA	NA	False	NA	-26	True	AATAAA	-14	NA	84167013	84067752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84098544_84099387_84099569_84100527_84100680_84115480_84115719_84117479_84117662_84166631
ENSMUSG00000027993.17_4	chr3	-	5101	4	ISM	ENSMUSG00000027993.17	ENSMUST00000065380.13	4296	12	39989	-2891	17674	-5	3prime_fragment	TRUE	canonical	3	56	junction_3	7.93025150224688	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGCAGACTGAGTGTTTA	NA	False	NA	-26	True	AATAAA	-14	NA	84080156	84067752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071
ENSMUSG00000027993.17_5	chr3	-	7050	12	FSM	ENSMUSG00000027993.17	ENSMUST00000054990.11	3816	12	42	-3276	42	-5	multi-exon	FALSE	canonical	2	9	junction_11	26.7448921515557	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGCAGACTGAGTGTTTA	NA	False	NA	-26	True	AATAAA	-14	NA	84178056	84067752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84098544_84099387_84099569_84100527_84100680_84115480_84115719_84117479_84117662_84177940
ENSMUSG00000027995.11_0	chr3	-	2872	3	FSM	ENSMUSG00000027995.11	ENSMUST00000029623.11	3014	3	138	4	138	-4	multi-exon	FALSE	canonical	3	25	junction_2	5.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGACCGGTTTCTCTGTT	NA	False	NA	-5	True	TATAAA	-12	NA	83748936	83743582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_83746097_83748195_83748444_83748826
ENSMUSG00000027995.11_1	chr3	-	2962	2	ISM	ENSMUSG00000027995.11	ENSMUST00000029623.11	3014	3	431	4	431	-4	3prime_fragment	FALSE	canonical	3	36	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGACCGGTTTCTCTGTT	NA	False	NA	-5	True	TATAAA	-12	NA	83748643	83743582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_83746097_83748195
ENSMUSG00000027995.11_2	chr3	-	1948	1	ISM	ENSMUSG00000027995.11	ENSMUST00000029623.11	3014	3	3547	1	3547	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACCGGTTTCTCTGTTTTT	NA	False	NA	-2	True	TATAAA	-15	NA	83745527	83743579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_83743600_83745500
ENSMUSG00000027996.14_0	chr3	+	1995	3	FSM	ENSMUSG00000027996.14	ENSMUST00000029625.8	2003	3	-11	19	-11	-19	multi-exon	FALSE	canonical	3	19	junction_1	5.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCTTGTTGTACCTATTC	NA	False	NA	2	True	TATAAA	-5	NA	83673616	83681604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_83674351_83676632_83676714_83680424
ENSMUSG00000027997.10_0	chr3	+	1271	7	FSM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	31	154	-2	-154	multi-exon	FALSE	canonical	3	125	junction_5	8.11206234909197	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGACACTTTCTAATTCCT	NA	False	NA	6	True	AATAAA	-15	NA	129695104	129707598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_129695156_129699114_129699157_129699551_129699702_129700049_129700127_129704171_129704348_129705766_129705924_129706980
ENSMUSG00000027998.12_0	chr3	+	1769	15	FSM	ENSMUSG00000027998.12	ENSMUST00000150268.8	1851	15	18	64	8	2	multi-exon	TRUE	canonical	3	670	junction_6	49.0312790627637	781	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGTGTTTTATTTCTGAA	NA	False	NA	26	True	AATAAA	-18	NA	82962846	82979598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
ENSMUSG00000027999.16_0	chr3	+	1511	4	FSM	ENSMUSG00000027999.16	ENSMUST00000029629.15	1561	4	41	9	41	-5	multi-exon	FALSE	canonical	3	341	junction_1	3.68178700572909	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAATCTCCTGAGAGTGTT	NA	False	NA	16	True	AATAAA	-16	NA	129672295	129689465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_129672585_129682529_129682607_129683916_129684083_129688486
ENSMUSG00000028007.14_0	chr3	-	1782	9	FSM	ENSMUSG00000028007.14	ENSMUST00000029639.12	2021	9	2	237	2	-13	multi-exon	FALSE	canonical	3	21	junction_1	4.05431868505671	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAAATGGGTGTCTAT	NA	False	NA	NA	False	AATAAA	-7	NA	117662583	117575532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_117576026_117594489_117594643_117623225_117623313_117626488_117626689_117630786_117630986_117632468_117632634_117633576_117633688_117640162_117640346_117662392
ENSMUSG00000028007.14_1	chr3	-	1633	8	FSM	ENSMUSG00000028007.14	ENSMUST00000169812.8	1588	8	-58	13	-2	-13	multi-exon	FALSE	canonical	3	11	junction_1	6.9045976991969	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAAATGGGTGTCTAT	NA	False	NA	NA	False	AATAAA	-7	NA	117662587	117575532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_117576026_117623225_117623313_117626488_117626689_117630786_117630986_117632468_117632634_117633576_117633688_117640162_117640346_117662392
ENSMUSG00000028010.17_0	chr3	-	987	6	ISM	ENSMUSG00000028010.17	ENSMUST00000029643.15	1271	7	542	6	78	1	3prime_fragment	FALSE	canonical	3	1505	junction_2	175.642136174666	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTACGTTTATTGAACGG	NA	False	NA	-7	True	AATAAA	-16	NA	129624503	129618566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243
ENSMUSG00000028010.17_1	chr3	-	1015	7	NNC	ENSMUSG00000028010.17	novel	1271	7	NA	NA	-188	1	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_6	620.417444593199	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTACGTTTATTGAACGG	NA	False	NA	-7	True	AATAAA	-16	NA	129624769	129618566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624740
ENSMUSG00000028010.17_2	chr3	-	1024	7	FSM	ENSMUSG00000028010.17	ENSMUST00000029643.15	1271	7	241	6	205	1	multi-exon	FALSE	canonical	3	868	junction_6	342.204130113397	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTACGTTTATTGAACGG	NA	False	NA	-7	True	AATAAA	-16	NA	129624804	129618566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624766
ENSMUSG00000028012.16_0	chr3	-	175	1	FSM	ENSMUSG00000028012.16	ENSMUST00000196281.2	3005	1	2830	0	2830	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGGAAAGAAGAGG	630	False	NA	NA	False	NA	NA	NA	129613277	129613102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_129613100_129613300
ENSMUSG00000028013.17_1	chr3	+	1192	12	FSM	ENSMUSG00000028013.17	ENSMUST00000029644.16	1226	12	20	14	8	-3	multi-exon	FALSE	canonical	3	471	junction_4	36.8801946894343	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACATTTTGAACTTCTC	NA	False	NA	7	True	AATAAA	-14	NA	133015890	133083825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_133016043_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083607
ENSMUSG00000028013.17_6	chr3	+	1181	12	FSM	ENSMUSG00000028013.17	ENSMUST00000122334.8	1368	12	8	179	8	-11	multi-exon	TRUE	canonical	3	35	junction_11	149.418321201731	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATACTAACATTTTG	NA	False	NA	-1	True	AATAAA	-6	NA	133015890	133083817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_133016043_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083610
ENSMUSG00000028016.10_0	chr3	+	1563	7	FSM	ENSMUSG00000028016.10	ENSMUST00000029650.9	3101	7	96	1442	-2	-1442	multi-exon	FALSE	canonical	3	154	junction_1	13.0213499897497	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTATTGTTTGTTACATT	NA	False	NA	8	True	AATAAA	-14	NA	132797696	132815307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_132797738_132802508_132802674_132804170_132804324_132806383_132806569_132808117_132808278_132812699_132812847_132814595
ENSMUSG00000028016.10_2	chr3	+	1561	6	ISM	ENSMUSG00000028016.10	ENSMUST00000029650.9	3101	7	4907	1404	-3640	-1404	3prime_fragment	FALSE	canonical	3	157	junction_4	11.0815161417561	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAAACTTGGATCTATTT	NA	False	NA	4	True	ATTAAA	-16	NA	132802507	132815345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_132802674_132804170_132804324_132806383_132806569_132808117_132808278_132812699_132812847_132814595
ENSMUSG00000028017.8_0	chr3	-	4089	19	NIC	ENSMUSG00000028017.8	novel	3346	19	NA	NA	0	798	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	1.07869376883042	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCATTTCCGTCTAAGG	NA	False	NA	NA	False	AATACA	-6	NA	129518735	129470415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_129472205_129474747_129474854_129476839_129476961_129479833_129480002_129484419_129484565_129486566_129486690_129490439_129490566_129491366_129491484_129496104_129496231_129499752_129499900_129500924_129501026_129504901_129505126_129506602_129506708_129510278_129510428_129511572_129511710_129512705_129512832_129513879_129514003_129516918_129517042_129518702
ENSMUSG00000028018.16_0	chr3	-	3462	12	FSM	ENSMUSG00000028018.16	ENSMUST00000029651.11	3503	12	15	26	15	-26	multi-exon	FALSE	canonical	3	158	junction_3	19.4795930515641	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTAAACTGTCGTCATGG	NA	False	NA	8	True	NA	NA	NA	132797571	132687538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_132688981_132692145_132692216_132701926_132701958_132704585_132704720_132709424_132709554_132711148_132711194_132711320_132711437_132768326_132768421_132777660_132777913_132787799_132788268_132790336_132790787_132797340
ENSMUSG00000028019.10_0	chr3	+	2908	6	FSM	ENSMUSG00000028019.10	ENSMUST00000029652.4	3521	6	603	10	-153	-4	multi-exon	FALSE	canonical	3	60	junction_1	10.870142593361	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTGTAAGTGTTCGTCT	NA	False	NA	36	True	AATAAA	-21	NA	80944325	81121337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_80944862_81048711_81048908_81082122_81082304_81111541_81111750_81116350_81116569_81119768
ENSMUSG00000028019.10_1	chr3	+	2975	7	FSM	ENSMUSG00000028019.10	ENSMUST00000129285.8	2818	7	-166	9	-166	-9	multi-exon	FALSE	canonical	3	14	junction_2	32.8705372974374	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGACAAGTGTAAGTGTT	NA	False	NA	31	True	AATAAA	-16	NA	80944312	81121332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_80944862_81038324_81038384_81048711_81048908_81082122_81082304_81111541_81111750_81116350_81116569_81119768
ENSMUSG00000028019.10_11	chr3	+	1418	1	ISM	ENSMUSG00000028019.10	ENSMUST00000029652.4	3521	6	176197	10	175189	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTGTAAGTGTTCGTCT	NA	False	NA	36	True	AATAAA	-21	NA	81119919	81121337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_81119900_81121300
ENSMUSG00000028020.17_0	chr3	-	2996	10	FSM	ENSMUSG00000028020.17	ENSMUST00000029654.15	3029	10	26	7	-20	-7	multi-exon	FALSE	canonical	3	21	junction_1	6.91214711777591	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCCATTTGCTCTTTAC	NA	False	NA	-18	True	ATTAAA	-15	NA	80820941	80750912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_80752565_80758214_80758508_80763091_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
ENSMUSG00000028020.17_14	chr3	-	3154	11	NIC	ENSMUSG00000028020.17	novel	3029	10	NA	NA	-20	-1	combination_of_known_junctions	TRUE	canonical	0	0	junction_8	15.4107105611649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGCTCTTTACTGCTAT	NA	False	NA	-12	True	ATTAAA	-21	NA	80820941	80750906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_80752565_80758214_80758508_80763091_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80816093_80816246_80819274_80819426_80820823
ENSMUSG00000028020.17_18	chr3	-	1191	8	FSM	ENSMUSG00000028020.17	ENSMUST00000107743.8	1101	8	-97	7	-11	0	multi-exon	FALSE	canonical	3	32	junction_4	4.17475405605784	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTACCTTCTGGTTTTG	NA	False	NA	NA	False	AATAAA	-13	NA	80820932	80762942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
ENSMUSG00000028020.17_4	chr3	-	3032	11	NNC	ENSMUSG00000028020.17	novel	3029	10	NA	NA	-8	-7	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	12.2918672300021	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCCATTTGCTCTTTAC	NA	False	NA	-18	True	ATTAAA	-15	NA	80820929	80750912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_80752565_80757734_80757783_80758214_80758508_80763091_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
ENSMUSG00000028023.17_0	chr3	+	2356	3	FSM	ENSMUSG00000028023.17	ENSMUST00000042587.12	2271	3	-89	4	-49	-4	multi-exon	FALSE	canonical	2	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAAATTGGTCTGGATTC	NA	False	NA	NA	False	AGTAAA	-10	NA	129007531	129013233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_129008431_129009287_129009494_129011982
ENSMUSG00000028029.12_0	chr3	-	1066	7	FSM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	50	10	2	-10	multi-exon	FALSE	canonical	3	854	junction_6	52.4195150259477	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATATAAAATATGTCTTGC	NA	False	NA	-26	True	AATAAA	-21	NA	132389595	132366269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389553
ENSMUSG00000028029.12_4	chr3	-	1028	6	ISM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	6746	6	101	-6	3prime_fragment	FALSE	canonical	3	862	junction_3	47.8388963083389	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATATGTCTTGCTCAT	NA	False	NA	-22	True	AATAAA	-25	NA	132382899	132366265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765
ENSMUSG00000028030.13_0	chr3	+	4144	26	FSM	ENSMUSG00000028030.13	ENSMUST00000169172.5	6578	26	5	2429	5	753	multi-exon	FALSE	canonical	1	21	junction_1	16.5633812973076	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTTTGGTTTTTTTT	NA	False	NA	7	True	ATTAAA	-11	NA	132389909	132545020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_132390156_132392532_132392754_132400143_132400217_132411273_132411389_132413545_132413620_132421349_132421492_132424380_132424442_132426281_132426344_132428066_132428129_132428428_132428578_132430536_132430676_132431421_132431522_132432417_132432468_132432811_132432942_132437926_132438026_132440107_132440171_132440478_132440606_132441834_132441886_132443265_132443350_132448762_132448849_132456947_132456985_132458268_132458431_132480181_132480358_132507264_132507441_132520950_132521111_132543721
ENSMUSG00000028030.13_25	chr3	+	3151	1	ISM	ENSMUSG00000028030.13	ENSMUST00000169172.5	6578	26	154320	74	51554	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTGTGGTGTATAGGAG	NA	False	NA	9	True	AATAAA	-29	NA	132544224	132547375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_132544200_132547400
ENSMUSG00000028030.13_3	chr3	+	2924	3	FSM	ENSMUSG00000028030.13	ENSMUST00000198147.5	5195	3	-19	2290	5	-2290	multi-exon	FALSE	canonical	1	21	junction_1	47	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTATTTAAAAAATGACAAAA	NA	False	NA	NA	False	AATAAA	-32	NA	132389909	132402600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_132390156_132392532_132392754_132400143
ENSMUSG00000028032.14_0	chr3	+	2494	12	FSM	ENSMUSG00000028032.14	ENSMUST00000029666.14	2600	12	101	5	4	-4	multi-exon	FALSE	canonical	3	27	junction_4	6.54292880561694	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATTTATGGTTTGTGTG	NA	False	NA	2	True	AATAAA	-13	NA	131270629	131349427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_131270745_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
ENSMUSG00000028032.14_13	chr3	+	1483	5	ISM	ENSMUSG00000028032.14	ENSMUST00000200527.5	2811	15	41007	5	40971	-4	3prime_fragment	FALSE	canonical	3	28	junction_4	5.76085931090146	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATTTATGGTTTGTGTG	NA	False	NA	2	True	AATAAA	-13	NA	131311666	131349427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
ENSMUSG00000028032.14_14	chr3	+	1207	3	ISM	ENSMUSG00000028032.14	ENSMUST00000200527.5	2811	15	54121	1	54085	0	3prime_fragment	FALSE	canonical	3	28	junction_2	7.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGGTTTGTGTGCATA	NA	False	NA	6	True	AATAAA	-17	NA	131324780	131349431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_131325051_131337346_131337577_131348724
ENSMUSG00000028032.14_3	chr3	+	2552	13	NIC	ENSMUSG00000028032.14	novel	2811	15	NA	NA	-2	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	14.8574242571031	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATTTATGGTTTGTGTG	NA	False	NA	2	True	AATAAA	-13	NA	131270623	131349427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_131270745_131271352_131271405_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
ENSMUSG00000028032.14_5	chr3	+	2662	13	FSM	ENSMUSG00000028032.14	ENSMUST00000199878.5	2648	13	-18	4	13	-4	multi-exon	FALSE	canonical	1	2	junction_1	13.8531484588242	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATTTATGGTTTGTGTG	NA	False	NA	2	True	AATAAA	-13	NA	131270638	131349427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_131270745_131273262_131273440_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
ENSMUSG00000028032.14_8	chr3	+	2180	10	ISM	ENSMUSG00000028032.14	ENSMUST00000200527.5	2811	15	17566	5	17530	-4	3prime_fragment	FALSE	canonical	3	27	junction_2	6.30696264280817	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATTTATGGTTTGTGTG	NA	False	NA	2	True	AATAAA	-13	NA	131288225	131349427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
ENSMUSG00000028032.14_9	chr3	+	1891	8	ISM	ENSMUSG00000028032.14	ENSMUST00000200527.5	2811	15	20147	5	20111	-4	3prime_fragment	FALSE	canonical	3	28	junction_7	5.14682386704338	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATTTATGGTTTGTGTG	NA	False	NA	2	True	AATAAA	-13	NA	131290806	131349427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
ENSMUSG00000028034.16_1	chr3	+	2412	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196695.5	2374	20	-38	0	-1	0	multi-exon	FALSE	canonical	1	416	junction_13	300.522177130688	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916117	151938408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028034.16_197	chr3	+	3157	1	ISM	ENSMUSG00000028034.16	ENSMUST00000166984.8	6523	20	23245	3	5826	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGATGAGTGTTTGTGT	NA	False	NA	8	True	AATAAA	-13	NA	151939303	151942460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_151939300_151942500
ENSMUSG00000028034.16_2	chr3	+	2409	20	FSM	ENSMUSG00000028034.16	ENSMUST00000166984.8	6523	20	59	4055	-1	0	multi-exon	FALSE	canonical	1	416	junction_13	269.035426927065	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916117	151938408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028034.16_6	chr3	+	2403	20	NIC	ENSMUSG00000028034.16	novel	2526	20	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	1	416	junction_13	332.523108563197	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916117	151938408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028034.16_7	chr3	+	2400	20	NIC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	1	416	junction_13	305.324648979145	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916117	151938408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028035.14_1	chr3	-	2375	4	FSM	ENSMUSG00000028035.14	ENSMUST00000144950.8	2459	4	-30	114	-30	-114	multi-exon	TRUE	canonical	3	8	junction_3	4.18993502999218	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTACTGTCTTCTGT	NA	False	NA	NA	False	AATATA	-11	NA	151915750	151889732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_151891018_151892051_151892621_151899013_151899256_151915471
ENSMUSG00000028035.14_2	chr3	-	3653	3	FSM	ENSMUSG00000028035.14	ENSMUST00000050073.13	2464	3	-1330	141	-1330	-114	multi-exon	FALSE	canonical	3	15	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTACTGTCTTCTGT	NA	False	NA	NA	False	AATATA	-11	NA	151900812	151889732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_151891018_151892051_151892621_151899013
ENSMUSG00000028035.14_8	chr3	-	2075	1	FSM	ENSMUSG00000028035.14	ENSMUST00000196291.2	4913	1	19	2819	-4	-2819	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	151915920	151913845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_151913800_151915900
ENSMUSG00000028039.12_0	chr3	-	1725	5	FSM	ENSMUSG00000028039.12	ENSMUST00000029673.10	2363	5	50	588	-28	-588	multi-exon	FALSE	canonical	3	176	junction_1	13.4047566184545	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATACCTGAGTGTGTGT	9239	False	NA	NA	False	AATAAA	-9	NA	89230222	89221793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89222875_89223114_89223193_89223376_89223443_89223769_89224060_89230012
ENSMUSG00000028039.12_4	chr3	-	1643	4	FSM	ENSMUSG00000028039.12	ENSMUST00000200436.2	742	4	-25	-876	-25	-589	multi-exon	FALSE	canonical	3	11	junction_1	91.0103779186137	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATACCTGAGTGTGTG	9242	False	NA	NA	False	AATAAA	-8	NA	89230219	89221794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89222875_89223376_89223443_89223769_89224060_89230012
ENSMUSG00000028040.8_0	chr3	-	3898	3	ISM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	61	5	61	-5	intron_retention	FALSE	canonical	3	34	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACCACCCTTCTTTGTG	1673	False	NA	NA	False	AATAAA	-9	NA	89245274	89240701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89241740_89242088_89242158_89242483
ENSMUSG00000028040.8_1	chr3	-	1234	4	FSM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	15	350	15	-350	multi-exon	FALSE	canonical	3	34	junction_1	2.62466929133727	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTGGCTCACACCTGT	1627	False	NA	-12	True	AATAAA	-18	NA	89245320	89241046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89241740_89242088_89242158_89242483_89242780_89245144
ENSMUSG00000028040.8_2	chr3	-	674	1	ISM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	3960	5	3960	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACCACCCTTCTTTGTG	5572	False	NA	NA	False	AATAAA	-9	NA	89241375	89240701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89240700_89241400
ENSMUSG00000028041.18_1	chr3	-	2807	21	FSM	ENSMUSG00000028041.18	ENSMUST00000074582.7	2799	21	-6	-2	1	-2	multi-exon	TRUE	canonical	3	16	junction_2	31.553882486946	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTCTGCTCCTGGAAG	NA	False	NA	-17	True	AATAAA	-14	NA	89257288	89246952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89247261_89247361_89247487_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ENSMUSG00000028041.18_12	chr3	-	2807	21	NNC	ENSMUSG00000028041.18	novel	2799	21	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	30.6652898241644	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTCTGCTCCTGGAAG	NA	False	NA	-17	True	AATAAA	-14	NA	89257294	89246952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_89247261_89247361_89247481_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ENSMUSG00000028041.18_14	chr3	-	2879	22	FSM	ENSMUSG00000028041.18	ENSMUST00000107448.9	2893	22	8	6	1	-2	multi-exon	FALSE	canonical	3	22	junction_3	33.3036602620203	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTCTGCTCCTGGAAG	NA	False	NA	-17	True	AATAAA	-14	NA	89257288	89246952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89247261_89247361_89247487_89247707_89247780_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ENSMUSG00000028041.18_17	chr3	-	2959	23	FSM	ENSMUSG00000028041.18	ENSMUST00000029676.12	2975	23	9	7	2	1	multi-exon	FALSE	canonical	3	47	junction_3	32.1478056009843	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTCTGCTCCTGGAA	NA	False	NA	-18	True	AATAAA	-13	NA	89257294	89246953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89247261_89247361_89247487_89247707_89247780_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ENSMUSG00000028041.18_2	chr3	-	2954	23	NNC	ENSMUSG00000028041.18	novel	2975	23	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_2	33.4334172412835	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTCTGCTCCTGGAAG	NA	False	NA	-17	True	AATAAA	-14	NA	89257294	89246952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_89247261_89247361_89247481_89247707_89247780_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ENSMUSG00000028041.18_54	chr3	-	1051	6	FSM	ENSMUSG00000028041.18	ENSMUST00000155295.8	1034	6	-21	4	1	-4	multi-exon	FALSE	canonical	3	122	junction_5	16.0549057923116	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCATAATAGGTTTTGATT	NA	False	NA	NA	False	ATTAAA	-20	NA	89257288	89253838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ENSMUSG00000028042.16_0	chr3	-	3087	2	ISM	ENSMUSG00000028042.16	ENSMUST00000107433.8	3650	3	6105	5	6105	-5	3prime_fragment	FALSE	canonical	3	40	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATATTTGTGTCCACTTTT	NA	False	NA	-14	True	AAGAAA	-18	NA	89288391	89284955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89287302_89287650
ENSMUSG00000028042.16_1	chr3	-	1238	1	ISM	ENSMUSG00000028042.16	ENSMUST00000107433.8	3650	3	8301	7	8301	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATATTTGTGTCCACTT	NA	False	NA	-16	True	AAGAAA	-16	NA	89286195	89284957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89285000_89286200
ENSMUSG00000028042.16_11	chr3	-	3641	4	NIC	ENSMUSG00000028042.16	novel	3851	3	NA	NA	8	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	16.2138486760204	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATATTTGTGTCCACTT	NA	False	NA	-16	True	AAGAAA	-16	NA	89300641	89284957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89287302_89287650_89288823_89300341_89300443_89300617
ENSMUSG00000028042.16_2	chr3	-	3785	4	NIC	ENSMUSG00000028042.16	novel	3851	3	NA	NA	-9	-7	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	12.2836838484589	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATATTTGTGTCCACTT	NA	False	NA	-16	True	AAGAAA	-16	NA	89300951	89284957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89287302_89287650_89288823_89300341_89300443_89300783
ENSMUSG00000028042.16_6	chr3	-	3681	4	NIC	ENSMUSG00000028042.16	novel	3851	3	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	3	7	junction_3	13.5728487143349	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATATTTGTGTCCACTT	NA	False	NA	-16	True	AAGAAA	-16	NA	89300984	89284957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89287302_89287650_89288823_89300341_89300443_89300920
ENSMUSG00000028042.16_8	chr3	-	3637	3	FSM	ENSMUSG00000028042.16	ENSMUST00000029677.9	3851	3	207	7	187	-7	multi-exon	FALSE	canonical	3	27	junction_2	6.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATATTTGTGTCCACTT	NA	False	NA	-16	True	AAGAAA	-16	NA	89300462	89284957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89287302_89287650_89288823_89300341
ENSMUSG00000028044.7_0	chr3	-	739	3	FSM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	108	2	-56	-2	multi-exon	FALSE	canonical	3	2335	junction_2	153.5	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGCTGTGGTTATAAGACT	NA	False	NA	-14	True	ATTAAA	-20	NA	89325582	89322780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89323271_89323580_89323709_89325461
ENSMUSG00000028044.7_3	chr3	-	519	2	ISM	ENSMUSG00000028044.7	ENSMUST00000107422.2	766	3	1715	-83	1715	-2	3prime_fragment	FALSE	canonical	3	2642	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGCTGTGGTTATAAGACT	NA	False	NA	-14	True	ATTAAA	-20	NA	89323609	89322780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89323271_89323580
ENSMUSG00000028048.12_2	chr3	+	1778	11	FSM	ENSMUSG00000028048.12	ENSMUST00000077367.11	1779	11	5	-4	-3	2	multi-exon	FALSE	canonical	3	268	junction_1	28.1177879642051	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTGCTATCTGTGACTA	NA	False	NA	5	True	ATTAAA	-15	NA	89110239	89115990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89110394_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
ENSMUSG00000028048.12_4	chr3	+	1945	12	FSM	ENSMUSG00000028048.12	ENSMUST00000167998.2	1938	12	-7	0	-3	0	multi-exon	FALSE	canonical	3	34	junction_1	111.217603696091	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGCTATCTGTGAC	NA	False	NA	3	True	ATTAAA	-13	NA	89110239	89115988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
ENSMUSG00000028049.16_0	chr3	+	1454	9	FSM	ENSMUSG00000028049.16	ENSMUST00000029684.15	1489	9	32	3	9	-1	multi-exon	TRUE	canonical	3	743	junction_2	141.598022585063	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTCACCCATTTCCTGTA	NA	False	NA	15	True	ATTAAA	-19	NA	89084811	89090069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ENSMUSG00000028049.16_1	chr3	+	1457	9	FSM	ENSMUSG00000028049.16	ENSMUST00000120697.8	1475	9	15	3	9	-1	multi-exon	FALSE	canonical	3	379	junction_2	249.13701049824	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTCACCCATTTCCTGTA	NA	False	NA	15	True	ATTAAA	-19	NA	89084811	89090069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ENSMUSG00000028051.11_1	chr3	-	3285	8	FSM	ENSMUSG00000028051.11	ENSMUST00000029686.4	4002	8	18	699	18	-699	multi-exon	FALSE	canonical	0	0	junction_5	6.95759752107767	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTGTTCACTTATTCAC	NA	False	NA	NA	False	NA	NA	NA	89067485	89054079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89055607_89056023_89056189_89057122_89057364_89057661_89057809_89058168_89058388_89058731_89058894_89059937_89060368_89067091
ENSMUSG00000028051.11_5	chr3	-	3584	7	NIC	ENSMUSG00000028051.11	novel	4002	8	NA	NA	59	-703	intron_retention	FALSE	canonical	0	0	junction_6	6.82316316348624	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGACTTGTTCACTTAT	NA	False	NA	NA	False	NA	NA	NA	89067444	89054083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89055607_89056023_89056189_89057122_89057364_89057661_89057809_89058168_89058894_89059937_89060368_89067091
ENSMUSG00000028053.14_10	chr3	+	3384	8	ISM	ENSMUSG00000028053.14	ENSMUST00000090933.5	11268	27	101342	0	14352	0	3prime_fragment	FALSE	canonical	3	13	junction_7	2.1946130708196	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTGGAGTCTTTGTGCC	3741	False	NA	2	True	ATTAAA	-18	NA	88974460	88986680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88974549_88976293_88976385_88977534_88977674_88977780_88977954_88979752_88979920_88982031_88982073_88983282_88983585_88984297
ENSMUSG00000028053.14_11	chr3	+	3065	5	ISM	ENSMUSG00000028053.14	ENSMUST00000090933.5	11268	27	104662	1	17672	-1	3prime_fragment	FALSE	canonical	3	13	junction_4	1.22474487139159	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGTGGAGTCTTTGTGC	7061	False	NA	1	True	ATTAAA	-17	NA	88977780	88986679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88977954_88979752_88979920_88982031_88982073_88983282_88983585_88984297
ENSMUSG00000028053.14_13	chr3	+	2603	2	ISM	ENSMUSG00000028053.14	ENSMUST00000090933.5	11268	27	110246	0	23256	0	3prime_fragment	FALSE	canonical	3	13	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTGGAGTCTTTGTGCC	NA	False	NA	2	True	ATTAAA	-18	NA	88983364	88986680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88983585_88984297
ENSMUSG00000028053.14_14	chr3	+	1885	1	ISM	ENSMUSG00000028053.14	ENSMUST00000186583.7	11644	28	126867	2	24687	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTGGAGTCTTTGTGCC	NA	False	NA	2	True	ATTAAA	-18	NA	88984795	88986680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88984800_88986700
ENSMUSG00000028053.14_2	chr3	+	9324	26	ISM	ENSMUSG00000028053.14	ENSMUST00000090933.5	11268	27	16848	0	16848	0	3prime_fragment	FALSE	canonical	1	5	junction_9	4.02909419100621	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTGGAGTCTTTGTGCC	NA	False	NA	2	True	ATTAAA	-18	NA	88889966	88986680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88893098_88909079_88909182_88914448_88915185_88930337_88930518_88933718_88933814_88940565_88940640_88942523_88942570_88942679_88942789_88950425_88950633_88950803_88950951_88959295_88959405_88960049_88960215_88960383_88960479_88961669_88961825_88965794_88965948_88970957_88971013_88971092_88971226_88973478_88973728_88974461_88974549_88976293_88976385_88977534_88977674_88977780_88977954_88979752_88979920_88982031_88982073_88983282_88983585_88984297
ENSMUSG00000028053.14_20	chr3	+	5655	24	ISM	ENSMUSG00000028053.14	ENSMUST00000090933.5	11268	27	41766	0	-15605	0	3prime_fragment	FALSE	canonical	3	5	junction_7	3.93376157783218	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTGGAGTCTTTGTGCC	827	False	NA	2	True	ATTAAA	-18	NA	88914884	88986680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88915185_88930337_88930518_88933718_88933814_88940565_88940640_88942523_88942570_88942679_88942789_88950425_88950633_88950803_88950951_88959295_88959405_88960049_88960215_88960383_88960479_88961669_88961825_88965794_88965948_88970957_88971013_88971092_88971226_88973478_88973728_88974461_88974549_88976293_88976385_88977534_88977674_88977780_88977954_88979752_88979920_88982031_88982073_88983282_88983585_88984297
ENSMUSG00000028053.14_21	chr3	+	3950	18	ISM	ENSMUSG00000028053.14	ENSMUST00000090933.5	11268	27	77439	769	-9551	-769	3prime_fragment	FALSE	canonical	3	5	junction_1	3.92225484192227	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAAGAAAATAGTTTGG	120	False	NA	NA	False	ATTAAA	-10	NA	88950557	88985911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88950633_88950803_88950951_88959295_88959405_88960049_88960215_88960383_88960479_88961669_88961825_88965794_88965948_88970957_88971013_88971092_88971226_88973478_88973728_88974461_88974549_88976293_88976385_88977534_88977674_88977780_88977954_88979752_88979920_88982031_88982073_88983282_88983585_88984297
ENSMUSG00000028053.14_5	chr3	+	5318	20	ISM	ENSMUSG00000028053.14	ENSMUST00000090933.5	11268	27	69090	3	11719	-3	3prime_fragment	FALSE	canonical	3	5	junction_3	4.14287761140093	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAACTGTGGAGTCTTTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	88942208	88986677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88942570_88942679_88942789_88950425_88950633_88950803_88950951_88959295_88959405_88960049_88960215_88960383_88960479_88961669_88961825_88965794_88965948_88970957_88971013_88971092_88971226_88973478_88973728_88974461_88974549_88976293_88976385_88977534_88977674_88977780_88977954_88979752_88979920_88982031_88982073_88983282_88983585_88984297
ENSMUSG00000028057.15_0	chr3	+	1102	6	FSM	ENSMUSG00000028057.15	ENSMUST00000029692.15	1204	6	39	63	1	-63	multi-exon	FALSE	canonical	3	56	junction_4	6.67532770731145	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGTGTGTACCGTGTGC	2256	False	NA	11	True	NA	NA	NA	88624183	88636971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88624265_88624632_88624778_88624908_88624966_88633301_88633376_88633586_88633779_88636418
ENSMUSG00000028057.15_4	chr3	+	1215	5	NIC	ENSMUSG00000028057.15	novel	1204	6	NA	NA	1	-63	intron_retention	FALSE	canonical	3	56	junction_3	7.24568837309472	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGTGTGTACCGTGTGC	2274	False	NA	11	True	NA	NA	NA	88624201	88636971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_88624265_88624632_88624966_88633301_88633376_88633586_88633779_88636418
ENSMUSG00000028057.15_5	chr3	+	2497	6	FSM	ENSMUSG00000028057.15	ENSMUST00000172333.8	993	6	-22	-1482	1	-11	multi-exon	FALSE	canonical	2	5	junction_2	24.0881713710277	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGATGTTTAAACAAGGT	2256	False	NA	NA	False	NA	NA	NA	88624183	88638337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88624265_88624632_88624778_88624879_88624966_88633301_88633376_88633586_88633779_88636418
ENSMUSG00000028059.17_19	chr3	+	4267	23	NIC	ENSMUSG00000028059.17	novel	3700	26	NA	NA	56	-6	intron_retention	FALSE	canonical	3	134	junction_1	52.3518768361218	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTGCAAGGCTGGAAAT	8674	False	NA	5	True	ATTAAA	-7	NA	88522729	88555349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_88522829_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ENSMUSG00000028059.17_23	chr3	+	4264	23	NIC	ENSMUSG00000028059.17	novel	3700	26	NA	NA	53	-6	intron_retention	FALSE	canonical	3	121	junction_5	65.9201871537101	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTGCAAGGCTGGAAAT	8671	False	NA	5	True	ATTAAA	-7	NA	88522726	88555349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_88522829_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539641_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ENSMUSG00000028059.17_35	chr3	+	4403	23	FSM	ENSMUSG00000028059.17	ENSMUST00000176500.8	4492	23	79	10	79	-6	multi-exon	FALSE	canonical	3	97	junction_1	58.4462916553691	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTGCAAGGCTGGAAAT	9473	False	NA	5	True	ATTAAA	-7	NA	88523528	88555349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88523764_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ENSMUSG00000028059.17_36	chr3	+	4404	23	FSM	ENSMUSG00000028059.17	ENSMUST00000177498.8	3966	23	72	-510	72	-6	multi-exon	FALSE	canonical	3	97	junction_1	70.6950294581072	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTGCAAGGCTGGAAAT	9466	False	NA	5	True	ATTAAA	-7	NA	88523521	88555349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88523764_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539641_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ENSMUSG00000028059.17_51	chr3	+	4244	22	FSM	ENSMUSG00000028059.17	ENSMUST00000029694.14	4300	22	46	10	14	-6	multi-exon	FALSE	canonical	3	163	junction_1	44.2621032808889	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTGCAAGGCTGGAAAT	NA	False	NA	5	True	ATTAAA	-7	NA	88528458	88555349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88528629_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ENSMUSG00000028059.17_55	chr3	+	4242	22	NIC	ENSMUSG00000028059.17	novel	4300	22	NA	NA	10	-6	intron_retention	FALSE	canonical	3	121	junction_4	61.0003159725656	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTGCAAGGCTGGAAAT	NA	False	NA	5	True	ATTAAA	-7	NA	88528454	88555349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_88528629_88537093_88537239_88539217_88539286_88539582_88539641_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ENSMUSG00000028059.17_70	chr3	+	4224	22	FSM	ENSMUSG00000028059.17	ENSMUST00000107510.10	4390	22	157	9	-11	-7	multi-exon	FALSE	canonical	3	33	junction_1	68.5955314781911	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATTGCAAGGCTGGAAA	NA	False	NA	4	True	ATTAAA	-6	NA	88528755	88555348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88528907_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ENSMUSG00000028059.17_72	chr3	+	3093	22	FSM	ENSMUSG00000028059.17	ENSMUST00000170653.9	4238	22	30	1115	6	4	multi-exon	FALSE	canonical	3	33	junction_1	79.8674923015028	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGCTGATTGTCCTTACC	NA	False	NA	13	True	AGTAAA	-19	NA	88528772	88554240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88528907_88537093_88537239_88539217_88539286_88539582_88539641_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
ENSMUSG00000028060.15_12	chr3	+	3546	13	NIC	ENSMUSG00000028060.15	novel	3636	13	NA	NA	2	0	intron_retention	FALSE	canonical	3	42	junction_9	122.701082128706	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTCATTTCTCTTTTT	-8	True	NA	13	True	AATAAA	-14	NA	88593122	88620161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607668_88607822_88616086_88616249_88617164_88617250_88618067
ENSMUSG00000028060.15_18	chr3	+	3665	13	ISM	ENSMUSG00000028060.15	ENSMUST00000029696.11	2981	14	22	71	-2	-1	intron_retention	FALSE	canonical	3	322	junction_11	32.668367302671	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTGTCATTTCTCTTTT	1	True	NA	12	True	AATAAA	-13	NA	88593131	88620160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617136_88617250_88618067
ENSMUSG00000028060.15_2	chr3	+	4568	12	NIC	ENSMUSG00000028060.15	novel	3636	13	NA	NA	1	4	intron_retention	FALSE	canonical	3	344	junction_7	27.8348138040141	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATTTCTCTTTTTCTTC	-9	True	NA	17	True	AATAAA	-18	NA	88593121	88620165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88617250_88618067
ENSMUSG00000028060.15_3	chr3	+	2892	14	FSM	ENSMUSG00000028060.15	ENSMUST00000029696.11	2981	14	19	70	-5	0	multi-exon	FALSE	canonical	3	322	junction_11	33.2047619027415	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTCATTTCTCTTTTT	-2	True	NA	13	True	AATAAA	-14	NA	88593128	88620161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617136_88617250_88618067_88618160_88618936
ENSMUSG00000028060.15_5	chr3	+	3642	13	FSM	ENSMUSG00000028060.15	ENSMUST00000199684.5	3636	13	-7	1	6	-1	multi-exon	FALSE	canonical	3	104	junction_11	83.5129730441125	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTGTCATTTCTCTTTT	-4	True	NA	12	True	AATAAA	-13	NA	88593126	88620160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617164_88617250_88618067
ENSMUSG00000028060.15_6	chr3	+	2866	14	FSM	ENSMUSG00000028060.15	ENSMUST00000198042.5	2567	14	-7	-292	6	0	multi-exon	FALSE	canonical	3	104	junction_11	80.4603618093109	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTCATTTCTCTTTTT	-4	True	NA	13	True	AATAAA	-14	NA	88593126	88620161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617164_88617250_88618067_88618160_88618936
ENSMUSG00000028060.15_77	chr3	+	1658	1	NIC	ENSMUSG00000028060.15	novel	2981	14	NA	NA	2418	1	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCATTTCTCTTTTTC	2074	False	NA	14	True	AATAAA	-15	NA	88618504	88620162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_88618500_88620200
ENSMUSG00000028062.16_0	chr3	-	565	4	FSM	ENSMUSG00000028062.16	ENSMUST00000029698.15	668	4	102	1	-29	0	multi-exon	FALSE	canonical	3	2467	junction_3	160.918889161244	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTCTCACCTGCTTT	1079	False	NA	-7	True	AATAAA	-13	NA	88460229	88457126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102
ENSMUSG00000028062.16_12	chr3	-	396	2	FSM	ENSMUSG00000028062.16	ENSMUST00000145172.2	567	2	161	10	-20	-10	multi-exon	FALSE	canonical	3	2467	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGGAAGTGAGAGTAC	1088	False	NA	NA	False	AATAAA	-12	NA	88460220	88459546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88459825_88460102
ENSMUSG00000028062.16_2	chr3	-	610	4	FSM	ENSMUSG00000028062.16	ENSMUST00000119002.2	568	4	-42	0	-8	0	multi-exon	FALSE	canonical	3	112	junction_3	1254.14043161929	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTCTCACCTGCTTT	1100	False	NA	-7	True	AATAAA	-13	NA	88460208	88457126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460036
ENSMUSG00000028063.16_0	chr3	-	3124	12	FSM	ENSMUSG00000028063.16	ENSMUST00000029699.13	3156	12	30	2	2	-2	multi-exon	FALSE	canonical	3	31	junction_1	44.0904404848575	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATGCTGTGGTGTCTCTT	NA	False	NA	-5	True	AATACA	-17	NA	88410612	88388456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88389408_88389652_88389920_88390624_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
ENSMUSG00000028063.16_3	chr3	-	2017	10	FSM	ENSMUSG00000028063.16	ENSMUST00000120377.8	2021	10	2	2	2	-1	multi-exon	FALSE	canonical	3	100	junction_5	22.6377811589932	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTGCTGCCCTGGCCTTT	NA	False	NA	-3	True	ATTAAA	-17	NA	88410612	88390513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
ENSMUSG00000028064.18_1	chr3	-	1783	5	FSM	ENSMUSG00000028064.18	ENSMUST00000156108.8	2108	5	321	4	321	-4	multi-exon	TRUE	canonical	3	30	junction_4	4.71036092035419	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAAGCTTATGGCGTGC	NA	False	NA	NA	False	ATTAAA	-16	NA	88348125	88343272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004
ENSMUSG00000028064.18_3	chr3	-	3220	15	FSM	ENSMUSG00000028064.18	ENSMUST00000029700.12	3205	15	-22	7	-22	-4	multi-exon	FALSE	canonical	0	0	junction_13	15.169787374238	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAAGCTTATGGCGTGC	9674	False	NA	NA	False	ATTAAA	-16	NA	88363068	88343272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004_88348186_88355297_88355449_88356986_88357160_88357294_88357420_88357817_88357935_88358651_88358758_88358994_88359094_88359326_88359390_88360277_88360439_88361985_88362154_88362854
ENSMUSG00000028064.18_5	chr3	-	2204	7	FSM	ENSMUSG00000028064.18	ENSMUST00000149145.2	2357	7	149	4	149	-4	multi-exon	FALSE	canonical	2	6	junction_6	14.3614066163451	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAAGCTTATGGCGTGC	NA	False	NA	NA	False	ATTAAA	-16	NA	88357196	88343272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004_88348186_88355297_88355449_88356986
ENSMUSG00000028066.16_0	chr3	-	1007	5	FSM	ENSMUSG00000028066.16	ENSMUST00000056370.13	1007	5	3	-3	-2	3	multi-exon	FALSE	canonical	0	0	junction_1	377.05205210952	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTGAGGAGGTTTCCT	NA	False	NA	-3	True	AATAAA	-19	NA	88317635	88301446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88301878_88303211_88303408_88306441_88306543_88307017_88307124_88317462
ENSMUSG00000028066.16_4	chr3	-	809	3	FSM	ENSMUSG00000028066.16	ENSMUST00000193338.6	795	3	-12	-2	-7	2	multi-exon	FALSE	canonical	0	0	junction_1	8.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGTGAGGAGGTTTCC	NA	False	NA	-4	True	AATAAA	-18	NA	88317645	88301447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88301878_88303211_88303408_88317462
ENSMUSG00000028068.15_0	chr3	+	5693	38	FSM	ENSMUSG00000028068.15	ENSMUST00000071812.11	5756	38	60	3	3	1	multi-exon	FALSE	canonical	3	183	junction_11	23.9826757536325	333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCCCTGCGTTGTTGCTA	NA	False	NA	16	True	AATAAA	-17	NA	87989337	88028352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87989400_87991237_87991326_87993456_87993614_87994584_87994663_87996200_87996278_87996967_87997036_87997123_87997238_87997444_87997624_87998042_87998122_87998777_87998942_87999718_87999807_88001890_88002055_88004208_88004367_88005624_88005747_88006163_88006328_88007932_88008024_88008734_88008903_88008984_88009125_88009203_88009375_88011366_88011451_88011607_88011680_88011772_88011843_88014818_88015028_88015667_88015821_88016113_88016278_88016578_88016804_88017301_88017443_88019610_88019696_88019904_88020138_88020406_88020540_88020653_88020757_88021230_88021358_88022210_88022299_88023210_88023424_88024086_88024254_88024505_88024608_88024982_88025092_88027469
ENSMUSG00000028069.17_0	chr3	+	1617	8	FSM	ENSMUSG00000028069.17	ENSMUST00000029707.13	1630	8	8	5	7	-5	multi-exon	FALSE	canonical	3	156	junction_1	22.2417148068898	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGAAATGTCTTTGTTTT	1727	False	NA	31	True	TTTAAA	-20	NA	87950422	87963292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87950487_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
ENSMUSG00000028069.17_15	chr3	+	1554	7	ISM	ENSMUSG00000028069.17	ENSMUST00000193398.2	2210	8	8033	-9	8033	-5	3prime_fragment	FALSE	canonical	3	164	junction_4	17.9760643325754	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGAAATGTCTTTGTTTT	5376	False	NA	31	True	TTTAAA	-20	NA	87958467	87963292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
ENSMUSG00000028069.17_18	chr3	+	472	1	ISM	ENSMUSG00000028069.17	ENSMUST00000029707.13	1630	8	12405	6	12385	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGAAATGTCTTTGTTT	9728	False	NA	30	True	TTTAAA	-19	NA	87962819	87963291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_87962800_87963300
ENSMUSG00000028069.17_2	chr3	+	1752	9	FSM	ENSMUSG00000028069.17	ENSMUST00000166021.8	1768	9	8	8	7	-5	multi-exon	FALSE	canonical	3	12	junction_2	81.6783898898601	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGAAATGTCTTTGTTTT	1727	False	NA	31	True	TTTAAA	-20	NA	87950422	87963292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87950487_87950773_87950909_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
ENSMUSG00000028070.8_0	chr3	-	924	6	FSM	ENSMUSG00000028070.8	ENSMUST00000029708.8	908	6	-19	3	-19	-3	multi-exon	TRUE	canonical	3	839	junction_3	34.2963554915096	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGAGTCTTCTGGCCT	NA	False	NA	-7	True	AATAAA	-22	NA	87965821	87963829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
ENSMUSG00000028072.7_1	chr3	-	326	1	ISM	ENSMUSG00000028072.7	ENSMUST00000029712.5	2588	17	16593	0	16593	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTCTCTTGGCCATTC	NA	False	NA	NA	False	NA	NA	NA	87685876	87685550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_87685600_87685900
ENSMUSG00000028072.7_5	chr3	-	1672	9	NIC	ENSMUSG00000028072.7	novel	2588	17	NA	NA	11187	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_8	2.29128784747792	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTCTCTTGGCCATTC	NA	False	NA	NA	False	NA	NA	NA	87691282	87685550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_87685907_87686942_87687102_87687377_87687619_87688737_87688911_87689047_87689179_87689457_87689605_87690031_87690135_87690380_87690437_87690976
ENSMUSG00000028076.13_0	chr3	-	1843	5	ISM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	379	10	-108	-10	3prime_fragment	FALSE	canonical	3	57	junction_4	12.9687123493429	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAAAATGTATCCAGA	NA	False	NA	NA	False	AATAAA	-10	NA	86906369	86903150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939
ENSMUSG00000028076.13_1	chr3	-	1806	6	FSM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	130	10	-2	-10	multi-exon	FALSE	canonical	3	57	junction_4	13.2	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAAAATGTATCCAGA	NA	False	NA	NA	False	AATAAA	-10	NA	86906618	86903150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939_86906213_86906498
ENSMUSG00000028076.13_2	chr3	-	2571	3	FSM	ENSMUSG00000028076.13	ENSMUST00000107620.3	1475	3	-1106	10	-99	-10	multi-exon	FALSE	canonical	3	84	junction_1	1.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAAAATGTATCCAGA	NA	False	NA	NA	False	AATAAA	-10	NA	86906360	86903150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_86903909_86903996_86904094_86904644
ENSMUSG00000028076.13_3	chr3	-	2524	4	NIC	ENSMUSG00000028076.13	novel	1946	6	NA	NA	17	-10	intron_retention	FALSE	canonical	3	57	junction_3	13.490737563232	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAAAATGTATCCAGA	NA	False	NA	NA	False	AATAAA	-10	NA	86906599	86903150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_86903909_86903996_86904094_86904644_86906213_86906498
ENSMUSG00000028076.13_5	chr3	-	2145	4	ISM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	365	4	-122	-4	intron_retention	FALSE	canonical	3	63	junction_3	10.6770782520313	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTATCCAGAGGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	86906383	86903144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378
ENSMUSG00000028076.13_6	chr3	-	2250	5	NIC	ENSMUSG00000028076.13	novel	1946	6	NA	NA	9	-10	intron_retention	FALSE	canonical	3	57	junction_3	14.2894191624432	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAAAATGTATCCAGA	NA	False	NA	NA	False	AATAAA	-10	NA	86906607	86903150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_86903909_86903996_86904094_86904644_86905658_86905939_86906213_86906498
ENSMUSG00000028078.15_0	chr3	-	3641	16	FSM	ENSMUSG00000028078.15	ENSMUST00000029719.14	4012	16	365	6	-108	0	multi-exon	FALSE	canonical	3	73	junction_11	51.275031827283	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATCCATGGGGTGGGT	NA	False	NA	-9	True	AATAAA	-14	NA	86827794	86693465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_86694720_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723741_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
ENSMUSG00000028078.15_1	chr3	-	3658	1	ISM	ENSMUSG00000028078.15	ENSMUST00000191752.6	8042	14	130563	8	2499	0	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATCCATGGGGTGGGT	NA	False	NA	-9	True	AATAAA	-14	NA	86697123	86693465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_86693500_86697100
ENSMUSG00000028078.15_12	chr3	-	3456	16	NIC	ENSMUSG00000028078.15	novel	3486	16	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_1	61.1551760324141	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATCCATGGGGTGGGT	NA	False	NA	-9	True	AATAAA	-14	NA	86827686	86693465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_86694720_86699375_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
ENSMUSG00000028078.15_2	chr3	-	3549	16	FSM	ENSMUSG00000028078.15	ENSMUST00000195561.6	3486	16	-63	0	-19	0	multi-exon	FALSE	canonical	3	155	junction_11	36.9688156874593	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATCCATGGGGTGGGT	NA	False	NA	-9	True	AATAAA	-14	NA	86827705	86693465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_86694720_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
ENSMUSG00000028080.17_10	chr3	+	10344	57	FSM	ENSMUSG00000028080.17	ENSMUST00000107635.7	9888	57	-452	-4	-452	1	multi-exon	FALSE	canonical	3	6	junction_1	7.26467550576635	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGAAACTGACATTGTCT	NA	False	NA	15	True	AATAAA	-23	NA	86131534	86690000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_86132062_86132375_86132812_86192303_86192536_86192940_86193042_86198733_86198830_86202395_86202518_86202608_86202736_86203552_86203673_86205171_86205319_86211542_86211741_86211906_86212041_86217267_86217377_86217693_86217847_86222642_86222812_86225401_86225482_86226867_86226931_86227811_86227910_86231035_86231129_86232312_86232422_86233007_86233090_86234905_86235030_86235470_86235664_86255425_86256476_86257553_86257733_86258509_86258664_86259135_86259317_86260975_86261104_86261505_86261614_86263893_86264054_86267037_86267489_86275810_86275945_86279384_86279464_86280742_86280877_86283211_86283274_86302527_86302593_86325194_86325304_86352613_86352781_86439391_86439517_86447209_86447357_86449881_86450019_86513176_86513295_86515654_86515758_86522278_86522395_86526816_86526930_86548797_86548939_86549959_86550080_86571744_86571898_86622819_86622988_86644388_86644479_86648711_86648890_86653107_86653171_86658833_86658990_86664688_86664857_86680406_86680509_86683304_86683502_86687418_86687571_86688877
ENSMUSG00000028080.17_2	chr3	+	10067	57	NNC	ENSMUSG00000028080.17	novel	6372	39	NA	NA	-452	-2	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_21	6.58846297612388	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTGAGTGGAAACTGACA	NA	False	NA	9	True	AATAAA	-17	NA	86131534	86689994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_86131791_86132375_86132812_86192303_86192536_86192940_86193042_86198733_86198830_86202395_86202518_86202608_86202736_86203552_86203673_86205171_86205319_86211542_86211741_86211906_86212041_86217267_86217377_86217693_86217847_86222642_86222812_86225401_86225482_86226867_86226931_86227811_86227910_86231035_86231129_86232312_86232422_86233007_86233090_86234905_86235030_86235470_86235664_86255425_86256476_86257553_86257733_86258509_86258664_86259135_86259317_86260975_86261104_86261505_86261614_86263893_86264054_86267037_86267489_86275810_86275945_86279384_86279464_86280742_86280877_86283211_86283274_86302527_86302593_86325194_86325304_86352613_86352781_86439391_86439517_86447209_86447357_86449881_86450019_86513176_86513295_86515654_86515758_86522278_86522395_86526816_86526930_86548797_86548939_86549959_86550080_86571744_86571898_86622819_86622988_86644388_86644479_86648711_86648890_86653107_86653171_86658833_86658990_86664688_86664857_86680406_86680509_86683304_86683502_86687418_86687571_86688877
ENSMUSG00000028080.17_22	chr3	+	2760	13	ISM	ENSMUSG00000028080.17	ENSMUST00000195524.2	3322	18	93318	7	93318	-4	3prime_fragment	FALSE	canonical	3	23	junction_6	8.96714682729251	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACTTGAGTGGAAACTGA	8945	False	NA	7	True	AATAAA	-15	NA	86548840	86689992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_86548939_86549959_86550080_86571744_86571898_86622819_86622988_86644388_86644479_86648711_86648890_86653107_86653171_86658833_86658990_86664688_86664857_86680406_86680509_86683304_86683502_86687418_86687571_86688877
ENSMUSG00000028080.17_24	chr3	+	1710	5	ISM	ENSMUSG00000028080.17	ENSMUST00000195524.2	3322	18	209190	7	209190	-4	3prime_fragment	FALSE	canonical	3	23	junction_1	11.4236596587959	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACTTGAGTGGAAACTGA	NA	False	NA	7	True	AATAAA	-15	NA	86664712	86689992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_86664857_86680406_86680509_86683304_86683502_86687418_86687571_86688877
ENSMUSG00000028080.17_25	chr3	+	554	1	ISM	ENSMUSG00000028080.17	ENSMUST00000107635.7	9888	57	557454	2	233918	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTGAGTGGAAACTGACA	NA	False	NA	9	True	AATAAA	-17	NA	86689440	86689994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_86689400_86690000
ENSMUSG00000028081.7_0	chr3	-	863	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	108	6	108	-6	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	2393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGTTTGCTTCTGTCCATT	NA	False	NA	NA	False	AATAAA	-15	NA	86049901	86045252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ENSMUSG00000028082.15_0	chr3	+	5161	21	FSM	ENSMUSG00000028082.15	ENSMUST00000238443.2	7217	21	4	2052	4	-636	multi-exon	FALSE	canonical	3	123	junction_1	14.9695524315191	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTCAGACTACACTGCA	NA	False	NA	9	True	AATAAA	-23	NA	85878419	86035781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_85878732_85948132_85948173_85982454_85982496_85987701_85987745_85990533_85990673_85990808_85990963_85991674_85992665_86000996_86001105_86005453_86005567_86010196_86010259_86011389_86011655_86014276_86014346_86014518_86014660_86020412_86020486_86022093_86022225_86024125_86024185_86027836_86028040_86028440_86028494_86030452_86030640_86030992_86031091_86033901
ENSMUSG00000028082.15_31	chr3	+	3764	15	FSM	ENSMUSG00000028082.15	ENSMUST00000107664.3	6414	15	597	2053	541	-641	multi-exon	FALSE	canonical	3	130	junction_2	13.4262915997847	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCTCATCTCAGACTACA	NA	False	NA	4	True	AATAAA	-18	NA	85992337	86035776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_85992665_86000996_86001105_86005453_86005567_86010196_86010259_86011389_86011655_86014276_86014346_86014518_86014660_86020412_86020486_86022093_86022225_86024125_86024185_86027836_86028040_86028440_86028494_86030452_86030640_86030992_86031091_86033901
ENSMUSG00000028082.15_41	chr3	+	1505	1	FSM	ENSMUSG00000028082.15	ENSMUST00000183202.2	3782	1	1648	629	1648	-629	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTACACTGCATTGTTCA	NA	False	NA	16	True	AATAAA	-30	NA	86034283	86035788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_86034300_86035800
ENSMUSG00000028082.15_6	chr3	+	5198	22	NIC	ENSMUSG00000028082.15	novel	7217	21	NA	NA	7	-636	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	45.6890307223153	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTCAGACTACACTGCA	NA	False	NA	9	True	AATAAA	-23	NA	85878422	86035781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_85878732_85948132_85948173_85982454_85982496_85986251_85986292_85987701_85987745_85990533_85990673_85990808_85990963_85991674_85992665_86000996_86001105_86005453_86005567_86010196_86010259_86011389_86011655_86014276_86014346_86014518_86014660_86020412_86020486_86022093_86022225_86024125_86024185_86027836_86028040_86028440_86028494_86030452_86030640_86030992_86031091_86033901
ENSMUSG00000028085.13_0	chr3	+	1999	13	FSM	ENSMUSG00000028085.13	ENSMUST00000127348.8	3469	13	9	1461	1	3	multi-exon	FALSE	canonical	3	140	junction_6	19.0283049399806	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGATGCCGTGGGTGCTTT	NA	False	NA	12	True	AATAAA	-16	NA	85481434	85561468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587_85559723_85561030
ENSMUSG00000028086.16_0	chr3	+	5126	14	FSM	ENSMUSG00000028086.16	ENSMUST00000107679.8	4473	14	-655	2	-655	-1	multi-exon	FALSE	canonical	3	30	junction_3	22.7195403737157	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCGCCTGTTTCTTCCA	NA	False	NA	23	True	AATAAA	-17	NA	84721919	84886503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_84723077_84771270_84771319_84771443_84771508_84810807_84811387_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
ENSMUSG00000028086.16_1	chr3	+	5055	13	NIC	ENSMUSG00000028086.16	novel	4473	14	NA	NA	-650	-3	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	21.8649580125115	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATTGCGCCTGTTTCTTC	NA	False	NA	21	True	AATAAA	-15	NA	84721924	84886501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_84723077_84771270_84771319_84810807_84811387_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
ENSMUSG00000028086.16_15	chr3	+	3596	11	ISM	ENSMUSG00000028086.16	ENSMUST00000107678.8	4073	13	39618	1	-21717	0	3prime_fragment	FALSE	canonical	3	58	junction_10	14.0499110317468	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCGCCTGTTTCTTCCAC	NA	False	NA	24	True	AATAAA	-18	NA	84811069	84886504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_84811387_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
ENSMUSG00000028086.16_16	chr3	+	3573	11	FSM	ENSMUSG00000028086.16	ENSMUST00000029727.8	2221	11	195	-1547	195	-5	multi-exon	FALSE	canonical	2	9	junction_1	26.0516794084374	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTATTGCGCCTGTTTCT	824	False	NA	19	True	AATAAA	-13	NA	84859647	84886499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_84859947_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
ENSMUSG00000028086.16_23	chr3	+	2507	4	ISM	ENSMUSG00000028086.16	ENSMUST00000029727.8	2221	11	20260	-1546	20260	-6	3prime_fragment	FALSE	canonical	3	58	junction_3	18.9091394715771	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTATTGCGCCTGTTTC	NA	False	NA	18	True	AATAAA	-12	NA	84879712	84886498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_84879864_84881709_84881936_84883480_84883692_84884579
ENSMUSG00000028086.16_24	chr3	+	2317	3	ISM	ENSMUSG00000028086.16	ENSMUST00000029727.8	2221	11	22297	-1547	22297	-5	3prime_fragment	FALSE	canonical	3	58	junction_2	16	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTATTGCGCCTGTTTCT	NA	False	NA	19	True	AATAAA	-13	NA	84881749	84886499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_84881936_84883480_84883692_84884579
ENSMUSG00000028086.16_26	chr3	+	1383	1	ISM	ENSMUSG00000028086.16	ENSMUST00000107679.8	4473	14	162546	2	25668	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCGCCTGTTTCTTCCA	NA	False	NA	23	True	AATAAA	-17	NA	84885120	84886503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_84885100_84886500
ENSMUSG00000028086.16_6	chr3	+	5017	12	NIC	ENSMUSG00000028086.16	novel	4473	14	NA	NA	-663	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	27.1137792421748	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTATTGCGCCTGTTTC	NA	False	NA	18	True	AATAAA	-12	NA	84721911	84886498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_84723077_84810807_84811387_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
ENSMUSG00000028086.16_7	chr3	+	1557	3	ISM	ENSMUSG00000028086.16	ENSMUST00000151410.2	4348	13	-874	113203	-664	-39025	5prime_fragment	FALSE	canonical	3	34	junction_2	7.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTAAGAATTTGGTAAGT	NA	False	NA	NA	False	ATTAAA	-28	NA	84721910	84771786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_84723077_84771270_84771319_84771443
ENSMUSG00000028089.6_0	chr3	-	2964	23	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	68.3504732250088	512	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTATGTTGCTTTTTT	NA	False	NA	-8	True	AATAGA	-13	NA	97517499	97468057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ENSMUSG00000028093.16_1	chr3	+	1611	10	FSM	ENSMUSG00000028093.16	ENSMUST00000090759.5	1754	10	83	60	83	-4	multi-exon	FALSE	canonical	3	1030	junction_1	83.6891662236509	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGCATCATGTTGAGA	NA	False	NA	13	True	AATAAA	-13	NA	97066175	97083830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
ENSMUSG00000028093.16_15	chr3	+	3721	7	NIC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	44	-4	intron_retention	FALSE	canonical	3	1030	junction_1	92.5466849157164	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGCATCATGTTGAGA	NA	False	NA	13	True	AATAAA	-13	NA	97066136	97083830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_97066682_97073158_97073288_97073389_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
ENSMUSG00000028093.16_69	chr3	+	181	1	FSM	ENSMUSG00000028093.16	ENSMUST00000198329.2	3291	1	115	2995	115	406	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACTTAA	NA	False	NA	NA	False	NA	NA	NA	97081439	97081620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_97081400_97081600
ENSMUSG00000028096.14_1	chr3	-	1747	14	FSM	ENSMUSG00000028096.14	ENSMUST00000029738.14	4598	14	38	2813	4	392	multi-exon	FALSE	canonical	3	110	junction_5	18.4284960714547	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGGCCTTGGGGTCACT	1901	False	NA	-29	True	AGTAAA	-14	NA	96812624	96778409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_96778911_96779792_96779859_96780775_96780866_96782943_96783040_96787389_96787483_96787936_96788026_96789834_96789945_96797224_96797306_96798118_96798240_96800181_96800284_96800813_96800921_96804648_96804753_96805807_96805868_96812497
ENSMUSG00000028096.14_4	chr3	-	4540	14	NIC	ENSMUSG00000028096.14	novel	4598	14	NA	NA	12	7	intron_retention	FALSE	canonical	1	1	junction_10	41.6774029560356	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATTACACGTCACTGAA	1909	False	NA	NA	False	AATAAA	-21	NA	96812616	96775589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_96778911_96779792_96779859_96780775_96780866_96782943_96783040_96787389_96787483_96787936_96788026_96789834_96789945_96797224_96797306_96798118_96798240_96800181_96800284_96800832_96800921_96804648_96804753_96805807_96805868_96812497
ENSMUSG00000028098.14_0	chr3	+	1981	9	FSM	ENSMUSG00000028098.14	ENSMUST00000029740.14	2209	9	30	198	22	-198	multi-exon	FALSE	canonical	3	647	junction_7	60.034885691571	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAAGCTCATTTTTCATG	4825	False	NA	24	True	ATTAAA	-24	NA	96635009	96698270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96635227_96661650_96661710_96665292_96665351_96682945_96683158_96690963_96691036_96692308_96692382_96693246_96693341_96695885_96696002_96697190
ENSMUSG00000028098.14_8	chr3	+	2039	7	NIC	ENSMUSG00000028098.14	novel	2209	9	NA	NA	28	-17	combination_of_known_splicesites	FALSE	canonical	3	119	junction_1	220.417028985209	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTGTGGAGCATGTCATT	4831	False	NA	-3	True	AATAAA	-4	NA	96635015	96698451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_96635227_96682945_96683158_96690963_96691036_96692308_96692382_96693246_96693341_96695885_96696002_96697190
ENSMUSG00000028099.9_0	chr3	-	2194	15	FSM	ENSMUSG00000028099.9	ENSMUST00000029741.9	2390	15	156	40	3	-7	multi-exon	FALSE	canonical	3	175	junction_5	23.0394515240839	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAAATTATATGTATCTG	NA	False	NA	NA	False	AATAAA	-10	NA	96634788	96618845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634664
ENSMUSG00000028099.9_1	chr3	-	2281	14	NIC	ENSMUSG00000028099.9	novel	2390	15	NA	NA	-10	-9	intron_retention	FALSE	canonical	3	175	junction_5	22.7614331762454	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCATAAATTATATGTATC	NA	False	NA	NA	False	AATAAA	-8	NA	96634780	96618847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631369_96633149_96633316_96634664
ENSMUSG00000028099.9_7	chr3	-	2022	14	NIC	ENSMUSG00000028099.9	novel	2390	15	NA	NA	-10	-5	combination_of_known_splicesites	FALSE	canonical	3	17	junction_13	58.8212617035912	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTATATGTATCTGTT	NA	False	NA	NA	False	AATAAA	-12	NA	96634780	96618843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96634664
ENSMUSG00000028100.12_0	chr3	-	2036	5	NIC	ENSMUSG00000028100.12	novel	1110	8	NA	NA	2	514	intron_retention	FALSE	canonical	3	53	junction_4	6.32455532033676	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCTGTCCATCTCTGA	NA	False	NA	NA	False	AAAAAG	-21	NA	96615876	96612868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_96613845_96614225_96614617_96614873_96615126_96615307_96615492_96615643
ENSMUSG00000028100.12_1	chr3	-	1085	8	FSM	ENSMUSG00000028100.12	ENSMUST00000171249.6	1110	8	26	-1	3	0	multi-exon	FALSE	canonical	3	52	junction_1	6.53405521487387	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTTTTTTAAGTGA	NA	False	NA	-1	True	AATAAA	-14	NA	96615852	96613383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615099_96615126_96615307_96615492_96615643
ENSMUSG00000028100.12_4	chr3	-	1134	8	FSM	ENSMUSG00000028100.12	ENSMUST00000029742.9	1039	8	5	-100	5	0	multi-exon	FALSE	canonical	3	11	junction_6	22.7075461699679	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTTTTTTAAGTGA	NA	False	NA	-1	True	AATAAA	-14	NA	96615850	96613383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615125_96615203_96615307_96615492_96615643
ENSMUSG00000028100.12_9	chr3	-	572	4	ISM	ENSMUSG00000028100.12	ENSMUST00000171249.6	1110	8	1263	-1	-56	0	3prime_fragment	FALSE	canonical	3	52	junction_1	7.1336448530109	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTTTTTTAAGTGA	NA	False	NA	-1	True	AATAAA	-14	NA	96614615	96613383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517
ENSMUSG00000028101.19_0	chr3	+	2822	14	FSM	ENSMUSG00000028101.19	ENSMUST00000107076.10	2858	14	36	0	-22	0	multi-exon	FALSE	canonical	3	88	junction_1	28.3212760050852	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	2624	False	NA	5	True	AATAAA	-15	NA	96603735	96613278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ENSMUSG00000028101.19_1	chr3	+	3259	13	ISM	ENSMUSG00000028101.19	ENSMUST00000162934.8	2281	14	-28	-488	-28	0	intron_retention	FALSE	canonical	3	24	junction_10	49.2191104484156	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	2618	False	NA	5	True	AATAAA	-15	NA	96603729	96613278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610945_96611054_96611224_96611374_96611509_96611664
ENSMUSG00000028101.19_12	chr3	+	2794	14	FSM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	29	108	-5	0	multi-exon	FALSE	canonical	3	105	junction_1	24.6852374253431	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	3316	False	NA	5	True	AATAAA	-15	NA	96604427	96613278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ENSMUSG00000028101.19_14	chr3	+	3250	13	ISM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	35	108	1	0	intron_retention	FALSE	canonical	3	105	junction_1	23.8449854966056	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	3322	False	NA	5	True	AATAAA	-15	NA	96604433	96613278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664
ENSMUSG00000028101.19_15	chr3	+	2674	15	FSM	ENSMUSG00000028101.19	ENSMUST00000107077.4	2695	15	10	11	-6	0	multi-exon	FALSE	canonical	3	19	junction_2	45.7727304969111	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	3331	False	NA	5	True	AATAAA	-15	NA	96604442	96613278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96604512_96606735_96606970_96607074_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ENSMUSG00000028101.19_2	chr3	+	3282	13	ISM	ENSMUSG00000028101.19	ENSMUST00000107076.10	2858	14	38	0	-20	0	intron_retention	FALSE	canonical	3	88	junction_1	28.0132657067247	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	2626	False	NA	5	True	AATAAA	-15	NA	96603737	96613278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664
ENSMUSG00000028101.19_4	chr3	+	2713	15	NIC	ENSMUSG00000028101.19	novel	2858	14	NA	NA	-20	-2	combination_of_known_junctions	FALSE	canonical	3	19	junction_2	47.4118408529053	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGAGCGTCATGGAGGG	2626	False	NA	3	True	AATAAA	-13	NA	96603737	96613276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_96603848_96606735_96606970_96607074_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ENSMUSG00000028102.16_0	chr3	+	1500	4	FSM	ENSMUSG00000028102.16	ENSMUST00000144962.8	2235	4	93	642	-31	-2	multi-exon	FALSE	canonical	3	9	junction_1	127.753234357839	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACTTTTTTATTCAATT	NA	False	NA	7	True	ATTAAA	-14	NA	96542784	96552040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96542817_96543989_96544106_96544446_96544649_96550890
ENSMUSG00000028102.16_1	chr3	+	1563	4	FSM	ENSMUSG00000028102.16	ENSMUST00000156015.2	1017	4	145	-691	-8	-2	multi-exon	FALSE	canonical	3	31	junction_1	117.382565428886	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACTTTTTTATTCAATT	NA	False	NA	7	True	ATTAAA	-14	NA	96542960	96552040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96543056_96543989_96544106_96544446_96544649_96550890
ENSMUSG00000028102.16_3	chr3	+	1133	5	FSM	ENSMUSG00000028102.16	ENSMUST00000048766.15	1122	5	-13	2	6	-2	multi-exon	FALSE	canonical	3	16	junction_4	117.48829728956	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACTTTTTTATTCAATT	NA	False	NA	7	True	ATTAAA	-14	NA	96542974	96552040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890_96551332_96551751
ENSMUSG00000028102.16_4	chr3	+	2173	1	NIC	ENSMUSG00000028102.16	novel	2235	4	NA	NA	5503	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTTTATTCAATTCAAG	NA	False	NA	11	True	ATTAAA	-18	NA	96549871	96552044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_96549900_96552000
ENSMUSG00000028104.15_0	chr3	-	1400	8	FSM	ENSMUSG00000028104.15	ENSMUST00000091924.10	1427	8	24	3	2	-3	multi-exon	FALSE	canonical	3	65	junction_6	13.8534604827436	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACATGTCTAACAGAGTGA	NA	False	NA	-3	True	NA	NA	NA	96501473	96485190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96489403_96489572_96501399
ENSMUSG00000028104.15_15	chr3	-	1160	2	FSM	ENSMUSG00000028104.15	ENSMUST00000141579.2	545	2	-90	-525	-90	-5	multi-exon	FALSE	canonical	3	95	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAACATGTCTAACAGAGT	NA	False	NA	-5	True	NA	NA	NA	96487561	96485192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_96485905_96487113
ENSMUSG00000028104.15_2	chr3	-	1338	6	NIC	ENSMUSG00000028104.15	novel	607	7	NA	NA	1	-2	intron_retention	TRUE	canonical	3	25	junction_5	29.5540183393054	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGTCTAACAGAGTGAT	NA	False	NA	-2	True	NA	NA	NA	96501474	96485189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_96485905_96487113_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96501399
ENSMUSG00000028104.15_4	chr3	-	1232	7	FSM	ENSMUSG00000028104.15	ENSMUST00000145001.2	607	7	2	-627	2	-3	multi-exon	FALSE	canonical	3	25	junction_6	26.9794160220137	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACATGTCTAACAGAGTGA	NA	False	NA	-3	True	NA	NA	NA	96501473	96485190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96501399
ENSMUSG00000028104.15_5	chr3	-	1494	7	NIC	ENSMUSG00000028104.15	novel	1427	8	NA	NA	12	-3	intron_retention	FALSE	canonical	3	65	junction_5	14.8436293854749	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACATGTCTAACAGAGTGA	NA	False	NA	-3	True	NA	NA	NA	96501463	96485190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_96485905_96487113_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96489403_96489572_96501399
ENSMUSG00000028106.14_13	chr3	-	3294	9	FSM	ENSMUSG00000028106.14	ENSMUST00000197449.2	3298	9	3	1	3	-1	multi-exon	FALSE	canonical	3	54	junction_5	23.6851087183488	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGAAAGTGTCATGAATT	10013	False	NA	-5	True	ATTAAA	-14	NA	95726087	95679567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95693631_95693710_95694595_95694697_95697411_95697542_95725858
ENSMUSG00000028106.14_14	chr3	-	3240	8	ISM	ENSMUSG00000028106.14	ENSMUST00000200164.5	7498	10	-167	11915	-21	-1	5prime_fragment	FALSE	canonical	3	55	junction_5	20.2957721544892	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGAAAGTGTCATGAATT	9989	False	NA	-5	True	ATTAAA	-14	NA	95726111	95679567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95694595_95694697_95697411_95697542_95725858
ENSMUSG00000028106.14_15	chr3	-	1414	1	ISM	ENSMUSG00000028106.14	ENSMUST00000197449.2	3298	9	45105	5	3085	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGACTGGAAAGTGTCATG	6885	False	NA	-9	True	ATTAAA	-10	NA	95680985	95679571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95679600_95681000
ENSMUSG00000028106.14_2	chr3	-	2327	1	ISM	ENSMUSG00000028106.14	ENSMUST00000200164.5	7498	10	55281	684	13407	-684	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATGCACAACATAGTG	3480	False	NA	-11	True	AATAAA	-18	NA	95670663	95668336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95668300_95670700
ENSMUSG00000028106.14_3	chr3	-	4708	10	FSM	ENSMUSG00000028106.14	ENSMUST00000200164.5	7498	10	-151	2941	-5	-2941	multi-exon	FALSE	canonical	3	28	junction_2	34.4318973563113	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAACGTGCAATGTTGGG	10005	False	NA	-11	True	AATAAA	-18	NA	95726095	95670593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95673733_95679307_95679509_95681423_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95694595_95694697_95697411_95697542_95725858
ENSMUSG00000028106.14_4	chr3	-	4781	11	NIC	ENSMUSG00000028106.14	novel	7756	11	NA	NA	1	-2940	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	33.6661551116251	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACGTGCAATGTTGGGG	10011	False	NA	-10	True	AATAAA	-19	NA	95726089	95670592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_95673733_95679307_95679509_95681423_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95693631_95693710_95694595_95694697_95697411_95697542_95725858
ENSMUSG00000028107.15_19	chr3	-	2499	17	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	1	-1	intron_retention	TRUE	canonical	1	178	junction_5	104.120554376886	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTGTGCCTTCATCTG	NA	False	NA	-20	True	AATAAA	-15	NA	95662182	95647288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
ENSMUSG00000028107.15_2	chr3	-	2154	16	FSM	ENSMUSG00000028107.15	ENSMUST00000163530.8	2157	16	1	2	1	-2	multi-exon	FALSE	canonical	1	51	junction_13	151.691997884602	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGCTGTGCCTTCATCT	NA	False	NA	-21	True	AATAAA	-14	NA	95662182	95647289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95660318_95660443_95661630_95661828_95662069
ENSMUSG00000028107.15_4	chr3	-	2394	18	FSM	ENSMUSG00000028107.15	ENSMUST00000029752.15	2400	18	1	5	1	-5	multi-exon	TRUE	canonical	1	178	junction_5	104.738626737206	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAAGGCTGTGCCTTCA	NA	False	NA	-24	True	AATAAA	-11	NA	95662182	95647292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
ENSMUSG00000028108.17_1	chr3	-	1896	11	FSM	ENSMUSG00000028108.17	ENSMUST00000117507.10	1901	11	4	1	2	0	multi-exon	FALSE	canonical	0	0	junction_8	2.86530975637888	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCGTTGTCTTTAGTGC	6909	False	NA	NA	False	AATAAA	-18	NA	95646877	95641459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95641784_95642134_95642223_95642510_95642732_95643158_95643534_95643783_95644104_95644324_95644370_95644944_95645026_95645119_95645201_95645323_95645429_95645550_95645614_95646684
ENSMUSG00000028108.17_5	chr3	-	446	3	ISM	ENSMUSG00000028108.17	ENSMUST00000029753.14	1895	11	4333	2	-216	-1	3prime_fragment	FALSE	canonical	2	4	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCCTCGTTGTCTTTAGT	9855	False	NA	NA	False	AATAAA	-16	NA	95642546	95641461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95641784_95642134_95642223_95642510
ENSMUSG00000028109.15_14	chr3	+	1642	15	NIC	ENSMUSG00000028109.15	novel	1444	16	NA	NA	0	187	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	83.0812240877466	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATAGTGTGTTATTAAC	NA	False	NA	6	True	ATTAAA	-17	NA	95466988	95495169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95467035_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
ENSMUSG00000028109.15_2	chr3	+	1388	15	FSM	ENSMUSG00000028109.15	ENSMUST00000029754.13	1385	15	0	-3	0	-1	multi-exon	FALSE	canonical	3	195	junction_6	50.4359059821958	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGTGTTTACCTGAGAT	NA	False	NA	NA	False	AATAAA	-14	NA	95466988	95494906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
ENSMUSG00000028109.15_7	chr3	+	1441	16	FSM	ENSMUSG00000028109.15	ENSMUST00000107154.4	1444	16	-1	4	0	0	multi-exon	FALSE	canonical	3	12	junction_15	107.711260114974	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATATTGTGTTTACCTGA	NA	False	NA	NA	False	AATAAA	-11	NA	95466987	95494903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95492845_95492901_95494691
ENSMUSG00000028114.17_0	chr3	-	2591	11	FSM	ENSMUSG00000028114.17	ENSMUST00000029759.16	2741	11	148	2	25	-2	multi-exon	FALSE	canonical	3	213	junction_2	25.8534330408942	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTTTGTTTTCCTTA	NA	False	NA	-4	True	AATAAA	-15	NA	123179609	123161947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
ENSMUSG00000028114.17_3	chr3	-	1006	1	ISM	ENSMUSG00000028114.17	ENSMUST00000090371.14	7197	7	16627	2	5527	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTTTGTTTTCCTTA	NA	False	NA	-4	True	AATAAA	-15	NA	123162953	123161947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_123161900_123163000
ENSMUSG00000028114.17_8	chr3	-	2375	10	NIC	ENSMUSG00000028114.17	novel	2741	11	NA	NA	-24	-2	combination_of_known_splicesites	TRUE	canonical	3	34	junction_1	76.5041756304118	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTTTGTTTTCCTTA	NA	False	NA	-4	True	AATAAA	-15	NA	123179604	123161947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_123163340_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
ENSMUSG00000028115.17_0	chr3	-	1449	10	FSM	ENSMUSG00000028115.17	ENSMUST00000107195.9	1810	10	37	324	-8	230	multi-exon	TRUE	canonical	1	1	junction_9	2.53859103528797	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTAAGGCTCTGAGTTT	NA	False	NA	NA	False	AAAAAG	-19	NA	95158467	95148905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95149173_95150042_95150142_95150308_95150396_95151452_95151585_95152295_95152399_95152960_95153144_95155886_95156112_95157116_95157182_95157477_95157574_95158275
ENSMUSG00000028121.9_0	chr3	+	3293	12	FSM	ENSMUSG00000028121.9	ENSMUST00000029766.9	3311	12	7	11	7	-11	multi-exon	TRUE	canonical	3	116	junction_1	21.0877740616698	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATTGTATCCTGTCTC	NA	False	NA	NA	False	AATATA	-11	NA	122213433	122323829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_122213833_122220093_122220404_122248701_122248742_122298575_122298705_122301774_122302221_122304867_122304972_122305999_122306653_122312911_122313028_122316817_122316990_122318572_122318685_122318935_122319149_122323230
ENSMUSG00000028121.9_13	chr3	+	2485	8	ISM	ENSMUSG00000028121.9	ENSMUST00000029766.9	3311	12	88278	11	-8	-11	3prime_fragment	FALSE	canonical	3	148	junction_2	11.5475945016921	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATTGTATCCTGTCTC	7549	False	NA	NA	False	AATATA	-11	NA	122301704	122323829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_122302221_122304867_122304972_122305999_122306653_122312911_122313028_122316817_122316990_122318572_122318685_122318935_122319149_122323230
ENSMUSG00000028121.9_18	chr3	+	1530	6	ISM	ENSMUSG00000028121.9	ENSMUST00000029766.9	3311	12	92908	11	464	-11	3prime_fragment	FALSE	canonical	3	153	junction_2	11.6619037896906	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATTGTATCCTGTCTC	NA	False	NA	NA	False	AATATA	-11	NA	122306334	122323829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_122306653_122312911_122313028_122316817_122316990_122318572_122318685_122318935_122319149_122323230
ENSMUSG00000028124.16_0	chr3	+	1745	7	FSM	ENSMUSG00000028124.16	ENSMUST00000029769.14	5589	7	47	3797	47	-8	multi-exon	FALSE	canonical	3	413	junction_2	51.1826793619352	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGAAATTTAATGTGTGT	NA	False	NA	8	True	AATAAA	-20	NA	122039252	122060584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_122039761_122049193_122049260_122052855_122052941_122055516_122055577_122056248_122056452_122058442_122058558_122059876
ENSMUSG00000028124.16_17	chr3	+	176	1	ISM	ENSMUSG00000028124.16	ENSMUST00000029769.14	5589	7	22534	2466	6312	1323	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTAAATGAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	122061739	122061915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_122061700_122061900
ENSMUSG00000028126.17_0	chr3	-	3553	15	FSM	ENSMUSG00000028126.17	ENSMUST00000107236.9	3618	15	24	41	5	-2	multi-exon	FALSE	canonical	3	17	junction_14	9.68798961896341	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAAAGTTCTAGCAATCA	1277	False	NA	-29	True	AATAAA	-16	NA	95014162	94965881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979354_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990137_95013686
ENSMUSG00000028126.17_10	chr3	-	1757	4	ISM	ENSMUSG00000028126.17	ENSMUST00000005768.8	3480	15	42384	1	14121	-1	3prime_fragment	FALSE	canonical	3	47	junction_2	4.92160768674447	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGTTCTAGCAATCAT	8191	False	NA	-28	True	AATAAA	-17	NA	94971706	94965880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641
ENSMUSG00000028126.17_14	chr3	-	750	2	FSM	ENSMUSG00000028126.17	ENSMUST00000107229.2	724	2	-40	14	-7	-14	multi-exon	FALSE	canonical	3	23	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGCAGC	1265	False	NA	NA	False	AATAAA	-19	NA	95014174	95004367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95004630_95013686
ENSMUSG00000028126.17_2	chr3	-	3563	15	FSM	ENSMUSG00000028126.17	ENSMUST00000107233.9	3663	15	68	32	-6	-6	multi-exon	FALSE	canonical	3	28	junction_14	7.6080650011172	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTAAAGTTCTAGCA	1266	False	NA	-33	True	AATAAA	-12	NA	95014173	94965885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979354_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990140_95013686
ENSMUSG00000028126.17_3	chr3	-	571	1	ISM	ENSMUSG00000028126.17	ENSMUST00000107236.9	3618	15	47735	40	19376	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGTTCTAGCAATCAT	NA	False	NA	-28	True	AATAAA	-17	NA	94966451	94965880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94965900_94966500
ENSMUSG00000028126.17_7	chr3	-	2821	6	ISM	ENSMUSG00000028126.17	ENSMUST00000005768.8	3480	15	40068	1	11805	-1	3prime_fragment	FALSE	canonical	3	47	junction_2	4.45421149026402	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGTTCTAGCAATCAT	5875	False	NA	-28	True	AATAAA	-17	NA	94974022	94965880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122
ENSMUSG00000028127.11_0	chr3	-	3353	23	FSM	ENSMUSG00000028127.11	ENSMUST00000029770.8	3489	23	121	15	-15	-15	multi-exon	TRUE	canonical	3	145	junction_14	20.5277981251709	318	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGATAACCTACAGAACA	7252	False	NA	-16	True	ATTAAA	-7	NA	121608830	121552570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121590097_121590135_121608657
ENSMUSG00000028128.14_0	chr3	+	1873	6	FSM	ENSMUSG00000028128.14	ENSMUST00000029771.13	1872	6	-9	8	-9	-8	multi-exon	FALSE	canonical	3	41	junction_2	13.6176356244394	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGACAATCGCATTTATAT	NA	False	NA	NA	False	AATAAA	-14	NA	121517176	121528689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_121517452_121518625_121518732_121522985_121523204_121525172_121525352_121526029_121526190_121527754
ENSMUSG00000028133.18_0	chr3	-	3410	3	NIC	ENSMUSG00000028133.18	novel	1145	4	NA	NA	2	-3	intron_retention	FALSE	canonical	3	77	junction_2	15.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGATTTGTTTTCATGT	NA	False	NA	-6	True	ATTAAA	-10	NA	120965341	120949497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_120949952_120950049_120952905_120965240
ENSMUSG00000028133.18_1	chr3	-	1038	5	FSM	ENSMUSG00000028133.18	ENSMUST00000106466.10	1484	5	1	445	0	0	multi-exon	FALSE	canonical	3	76	junction_3	13.1244047484067	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTTTCATGTTTACTT	NA	False	NA	0	True	ATTAAA	-16	NA	120965343	120949491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_120949707_120949835_120949952_120950049_120950166_120952416_120952905_120965240
ENSMUSG00000028133.18_18	chr3	-	1606	4	FSM	ENSMUSG00000028133.18	ENSMUST00000039761.12	1145	4	0	-461	0	-4	multi-exon	FALSE	canonical	3	76	junction_2	14.8548533034381	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGACTCTTGTGTCTGA	NA	False	NA	NA	False	ATTAAA	-17	NA	120965343	120949052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_120949952_120950049_120950166_120952416_120952905_120965240
ENSMUSG00000028133.18_4	chr3	-	3953	2	NIC	ENSMUSG00000028133.18	novel	1583	3	NA	NA	0	-7	intron_retention	FALSE	canonical	3	77	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAAAGGACTCTTGTGTC	NA	False	NA	NA	False	ATTAAA	-14	NA	120965344	120949055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_120952905_120965240
ENSMUSG00000028133.18_5	chr3	-	3289	4	NIC	ENSMUSG00000028133.18	novel	1158	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	77	junction_3	12.657891697365	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTTTCATGTTTACTT	NA	False	NA	0	True	ATTAAA	-16	NA	120965343	120949491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_120949707_120949835_120949952_120950049_120952905_120965240
ENSMUSG00000028134.12_1	chr3	-	3172	14	FSM	ENSMUSG00000028134.12	ENSMUST00000029780.12	3364	14	-66	258	-66	-258	multi-exon	FALSE	canonical	3	41	junction_1	15.6821233920295	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGTTGGGAGGTTTGA	NA	False	NA	NA	False	ATTAAA	-13	NA	119577103	119512648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_119514110_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
ENSMUSG00000028134.12_10	chr3	-	3132	13	FSM	ENSMUSG00000028134.12	ENSMUST00000197833.5	1598	13	-213	-1321	-59	-257	multi-exon	TRUE	canonical	3	11	junction_4	23.7888571020598	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGTTGGGAGGTTTGAT	NA	False	NA	NA	False	ATTAAA	-14	NA	119577096	119512647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_119514110_119514255_119514334_119514437_119514655_119517742_119517836_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
ENSMUSG00000028134.12_11	chr3	-	3195	14	NIC	ENSMUSG00000028134.12	novel	3777	14	NA	NA	-77	-258	combination_of_known_junctions	FALSE	canonical	3	6	junction_6	23.8597975856545	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGTTGGGAGGTTTGA	NA	False	NA	NA	False	ATTAAA	-13	NA	119577114	119512648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519870_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
ENSMUSG00000028134.12_22	chr3	-	3154	13	NIC	ENSMUSG00000028134.12	novel	3777	14	NA	NA	-85	-258	combination_of_known_junctions	FALSE	canonical	3	11	junction_4	23.7888571020598	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGTTGGGAGGTTTGA	NA	False	NA	NA	False	ATTAAA	-13	NA	119577122	119512648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
ENSMUSG00000028134.12_4	chr3	-	3173	14	FSM	ENSMUSG00000028134.12	ENSMUST00000200097.5	3777	14	346	258	-70	-258	multi-exon	TRUE	canonical	3	41	junction_1	15.6821233920295	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGTTGGGAGGTTTGA	NA	False	NA	NA	False	ATTAAA	-13	NA	119577107	119512648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
ENSMUSG00000028134.12_7	chr3	-	911	1	ISM	ENSMUSG00000028134.12	ENSMUST00000029780.12	3364	14	63478	258	4477	-258	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGTTGGGAGGTTTGA	NA	False	NA	NA	False	ATTAAA	-13	NA	119513559	119512648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_119512600_119513600
ENSMUSG00000028134.12_8	chr3	-	3113	14	NIC	ENSMUSG00000028134.12	novel	3364	14	NA	NA	8	-258	combination_of_known_junctions	FALSE	canonical	3	6	junction_6	23.8597975856545	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGTTGGGAGGTTTGA	NA	False	NA	NA	False	ATTAAA	-13	NA	119577029	119512648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_119514110_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519870_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
ENSMUSG00000028136.16_0	chr3	-	6100	12	FSM	ENSMUSG00000028136.16	ENSMUST00000029783.16	6261	12	155	6	-12	-6	multi-exon	FALSE	canonical	3	75	junction_1	37.6139590757922	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAATTCTTTGGTTTCCT	NA	False	NA	-8	True	AATAAA	-15	NA	94489868	94404856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94409373_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
ENSMUSG00000028136.16_1	chr3	-	5306	12	FSM	ENSMUSG00000028136.16	ENSMUST00000107283.8	3531	12	-12	-1763	-12	-6	multi-exon	FALSE	canonical	3	101	junction_1	30.5951975921464	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAATTCTTTGGTTTCCT	NA	False	NA	-8	True	AATAAA	-15	NA	94489868	94404856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94408579_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
ENSMUSG00000028136.16_2	chr3	-	2677	1	ISM	ENSMUSG00000028136.16	ENSMUST00000029783.16	6261	12	82490	6	18865	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAATTCTTTGGTTTCCT	5355	False	NA	-8	True	AATAAA	-15	NA	94407533	94404856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94404900_94407500
ENSMUSG00000028138.9_0	chr3	+	1381	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	39	184	20	72	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	1279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTGTGTGAGTTGAACA	4963	False	NA	16	True	AATAAA	-13	NA	138148892	138161076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
ENSMUSG00000028138.9_26	chr3	+	1322	8	ISM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	2194	184	2106	72	3prime_fragment	FALSE	canonical	3	1982	junction_2	114.955182038702	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTGTGTGAGTTGAACA	7118	False	NA	16	True	AATAAA	-13	NA	138151047	138161076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
ENSMUSG00000028140.14_0	chr3	+	1592	7	FSM	ENSMUSG00000028140.14	ENSMUST00000029786.14	1612	7	12	8	0	-8	multi-exon	FALSE	canonical	3	188	junction_4	26.1002341411379	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCTTTTTAAAAAAAGAAAA	8502	False	NA	NA	False	NA	NA	NA	94350643	94356007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94355092
ENSMUSG00000028140.14_12	chr3	+	175	1	ISM	ENSMUSG00000028140.14	ENSMUST00000029786.14	1612	7	5207	2	5195	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAAAAAGAACT	NA	False	NA	NA	False	NA	NA	NA	94355838	94356013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_94355800_94356000
ENSMUSG00000028145.10_0	chr3	+	1697	6	FSM	ENSMUSG00000028145.10	ENSMUST00000049822.10	1781	6	76	8	29	-8	multi-exon	FALSE	canonical	3	18	junction_4	4.47213595499958	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGCATATTTGCTTCTT	NA	False	NA	9	True	AATAAA	-19	NA	94217471	94239839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94217596_94224696_94224884_94230888_94231049_94231583_94231692_94237068_94237194_94238846
ENSMUSG00000028145.10_1	chr3	+	1526	5	NIC	ENSMUSG00000028145.10	novel	1781	6	NA	NA	21	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	7.81024967590665	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTTCTTGTTTTCAC	NA	False	NA	17	True	AATAAA	-27	NA	94217463	94239847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_94217596_94230888_94231049_94231583_94231692_94237068_94237194_94238846
ENSMUSG00000028149.13_0	chr3	-	3670	15	FSM	ENSMUSG00000028149.13	ENSMUST00000098574.9	3669	15	-12	11	-12	-3	multi-exon	FALSE	canonical	3	58	junction_10	10.7892614791424	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTACAGTGAGATTACTT	NA	False	NA	-13	True	AATAAA	-14	NA	138780974	138631673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661223_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138689482_138689630_138721306_138721433_138727573_138727697_138756241_138756350_138780796
ENSMUSG00000028149.13_1	chr3	-	3521	14	FSM	ENSMUSG00000028149.13	ENSMUST00000029796.11	3383	14	-141	3	-10	-3	multi-exon	FALSE	canonical	3	34	junction_10	15.970386796752	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTACAGTGAGATTACTT	NA	False	NA	-13	True	AATAAA	-14	NA	138780972	138631673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661223_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138721306_138721433_138727573_138727697_138756241_138756350_138780796
ENSMUSG00000028149.13_5	chr3	-	3671	15	FSM	ENSMUSG00000028149.13	ENSMUST00000196280.5	3598	15	-80	7	-16	-3	multi-exon	FALSE	canonical	3	17	junction_4	20.5834538265222	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTACAGTGAGATTACTT	NA	False	NA	-13	True	AATAAA	-14	NA	138780978	138631673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661220_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138689482_138689630_138721306_138721433_138727573_138727697_138756241_138756350_138780796
ENSMUSG00000028149.13_7	chr3	-	3500	14	NIC	ENSMUSG00000028149.13	novel	3598	15	NA	NA	5	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	23.9889027598451	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGAGATTACTTGGTTT	NA	False	NA	-8	True	AATAAA	-19	NA	138780949	138631668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661220_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138721306_138721433_138727573_138727697_138756241_138756350_138780796
ENSMUSG00000028150.15_1	chr3	+	2146	10	FSM	ENSMUSG00000028150.15	ENSMUST00000197040.5	2576	10	-9	439	-9	-3	multi-exon	FALSE	canonical	0	0	junction_1	1.49071198499986	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGCCTTTCTTCTTCCT	NA	False	NA	NA	False	AATATA	-14	NA	94284729	94305144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94284911_94294427_94294514_94294766_94294909_94296057_94296565_94296781_94296904_94298380_94298514_94298686_94298795_94298951_94299063_94300337_94300448_94304498
ENSMUSG00000028150.15_2	chr3	+	1903	11	FSM	ENSMUSG00000028150.15	ENSMUST00000029795.10	2136	11	35	198	35	-4	multi-exon	FALSE	canonical	0	0	junction_7	1.32664991614216	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATCAGCAGGGATAAATC	NA	False	NA	NA	False	AATAAA	-11	NA	94280135	94304949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94280239_94282341_94282372_94294427_94294514_94294766_94294909_94296057_94296565_94296781_94296904_94298380_94298514_94298686_94298795_94298951_94299063_94300337_94300448_94304498
ENSMUSG00000028152.11_0	chr3	+	3110	8	FSM	ENSMUSG00000028152.11	ENSMUST00000029800.9	6653	8	62	3481	-48	-2	multi-exon	FALSE	canonical	3	131	junction_4	20.1990098767242	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGGGATCACGTCGTCT	4887	False	NA	17	True	AATAAA	-30	NA	138448017	138610185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_138448422_138574106_138574158_138596495_138596643_138600108_138600280_138602549_138602676_138603873_138603922_138604027_138604145_138608139
ENSMUSG00000028152.11_1	chr3	+	3048	8	FSM	ENSMUSG00000028152.11	ENSMUST00000142890.8	3000	8	-50	2	-50	-2	multi-exon	FALSE	canonical	3	60	junction_4	43.0926860596637	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGGGATCACGTCGTCT	4885	False	NA	17	True	AATAAA	-30	NA	138448015	138610185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_138448422_138574106_138574158_138596495_138596643_138600108_138600280_138602613_138602676_138603873_138603922_138604027_138604145_138608139
ENSMUSG00000028152.11_20	chr3	+	1990	1	ISM	ENSMUSG00000028152.11	ENSMUST00000029800.9	6653	8	160237	3484	41939	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTACATGGGATCACGTCG	NA	False	NA	14	True	AATAAA	-27	NA	138608192	138610182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_138608200_138610200
ENSMUSG00000028156.13_0	chr3	+	1617	7	FSM	ENSMUSG00000028156.13	ENSMUST00000200020.5	1421	7	861	-1057	1	242	multi-exon	FALSE	canonical	3	1289	junction_1	283.691978894168	1577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAACTAGATTTGTCCTT	NA	False	NA	23	True	AATAAA	-24	NA	138233046	138262217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
ENSMUSG00000028156.13_18	chr3	+	1587	6	ISM	ENSMUSG00000028156.13	ENSMUST00000196990.5	856	8	19036	-897	-4534	241	3prime_fragment	FALSE	canonical	3	1684	junction_2	178.575474239885	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACAACTAGATTTGTCCT	NA	False	NA	22	True	AATAAA	-23	NA	138252081	138262216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
ENSMUSG00000028158.15_0	chr3	-	4249	20	FSM	ENSMUSG00000028158.15	ENSMUST00000098580.6	3072	20	19	-1196	19	-5	multi-exon	FALSE	canonical	0	0	junction_5	5.34670530492644	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGCCCCTTTTGTCTTG	NA	False	NA	NA	False	AATAAA	-33	NA	137849130	137795619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_137796991_137798339_137798511_137800719_137800845_137808847_137809076_137810427_137810550_137810703_137810802_137812862_137813072_137814716_137814930_137817404_137817513_137818220_137818390_137819816_137819975_137820896_137821048_137821762_137821903_137822167_137822285_137824073_137824182_137829493_137829638_137830818_137831007_137839760_137839897_137844662_137844758_137848932
ENSMUSG00000028158.15_3	chr3	-	3068	11	ISM	ENSMUSG00000028158.15	ENSMUST00000029805.13	3963	18	17068	5	17068	-5	3prime_fragment	TRUE	canonical	0	0	junction_5	5.85576638878294	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGCCCCTTTTGTCTTG	NA	False	NA	NA	False	AATAAA	-33	NA	137820070	137795619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_137796991_137798339_137798511_137800719_137800845_137808847_137809076_137810427_137810550_137810703_137810802_137812862_137813072_137814716_137814930_137817404_137817513_137818220_137818390_137819816
ENSMUSG00000028158.15_7	chr3	-	1113	1	NIC	ENSMUSG00000028158.15	novel	3072	20	NA	NA	5	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAAGTATGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	137849144	137848031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_137848000_137849100
ENSMUSG00000028159.15_0	chr3	-	2862	9	FSM	ENSMUSG00000028159.15	ENSMUST00000029806.13	3083	9	33	188	18	-187	multi-exon	FALSE	canonical	3	16	junction_1	5.49431524395898	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCATTGTGTCAAGTT	NA	False	NA	NA	False	AATAAA	-14	NA	137687273	137636955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_137638951_137641342_137641431_137643497_137643584_137644897_137644961_137646621_137646670_137655407_137655539_137667202_137667337_137671641_137671765_137687079
ENSMUSG00000028159.15_2	chr3	-	2084	1	ISM	ENSMUSG00000028159.15	ENSMUST00000029806.13	3083	9	48439	16	21607	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTTTTGTGGTACATG	NA	False	NA	NA	False	ATTAAA	-9	NA	137638867	137636783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_137636800_137638900
ENSMUSG00000028161.18_0	chr3	+	2821	13	FSM	ENSMUSG00000028161.18	ENSMUST00000070198.14	4758	13	-11	1948	-11	0	multi-exon	FALSE	canonical	3	173	junction_9	19.2887416789057	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	TATAAA	-18	NA	136375873	136641540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_136376663_136503486_136503688_136574362_136574488_136581849_136581962_136583390_136583537_136587161_136587302_136593707_136593786_136596196_136596292_136608863_136608990_136611059_136611135_136627593_136627679_136634282_136634381_136640789
ENSMUSG00000028161.18_22	chr3	+	1905	1	ISM	ENSMUSG00000028161.18	ENSMUST00000070198.14	4758	13	265686	13	32661	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAATAAGCAGTCGATG	NA	False	NA	0	True	AATAAA	-9	NA	136641570	136643475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_136641600_136643500
ENSMUSG00000028163.18_0	chr3	-	1751	7	ISM	ENSMUSG00000028163.18	ENSMUST00000129428.8	2520	13	14025	-221	-17	-4	3prime_fragment	FALSE	canonical	3	48	junction_1	5.39804491356722	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAATCTTGTCTGATCTC	NA	False	NA	-6	True	AATAAA	-19	NA	135300219	135290421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969
ENSMUSG00000028163.18_1	chr3	-	4004	25	FSM	ENSMUSG00000028163.18	ENSMUST00000029812.14	4117	25	107	6	107	-4	multi-exon	FALSE	canonical	3	24	junction_17	10.9790678363673	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAATCTTGTCTGATCTC	NA	False	NA	-6	True	AATAAA	-19	NA	135397200	135290421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969_135300140_135300625_135300828_135307186_135307302_135309470_135309613_135310817_135311007_135312332_135312423_135313912_135314057_135318174_135318314_135319411_135319504_135319667_135319773_135321032_135321192_135324564_135324729_135332355_135332505_135361260_135361360_135364788_135364827_135368675_135368755_135373513_135373554_135375030_135375101_135396883
ENSMUSG00000028163.18_5	chr3	-	2517	13	FSM	ENSMUSG00000028163.18	ENSMUST00000129428.8	2520	13	217	-214	4	-11	multi-exon	FALSE	canonical	3	27	junction_8	12.1275054685161	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTGACCTAATCTTGTC	NA	False	NA	-13	True	AATAAA	-12	NA	135314027	135290428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969_135300140_135300625_135300828_135307186_135307302_135309470_135309613_135310817_135311007_135312332_135312423_135313912
ENSMUSG00000028164.16_0	chr3	+	3593	17	FSM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	9	73	1	-73	multi-exon	TRUE	canonical	3	85	junction_8	25.1755554804656	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGCACTGACAACTTGA	NA	False	NA	11	True	NA	NA	NA	135191380	135277092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_135191619_135212669_135212765_135216735_135216842_135217563_135217735_135223663_135223788_135228752_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
ENSMUSG00000028164.16_14	chr3	+	2917	12	ISM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	37322	74	-2	-74	3prime_fragment	FALSE	canonical	3	85	junction_3	26.9876004585883	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTGCACTGACAACTTG	NA	False	NA	10	True	NA	NA	NA	135228693	135277091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
ENSMUSG00000028165.10_0	chr3	-	1035	3	FSM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	530	1796	9	-1796	multi-exon	FALSE	canonical	3	215	junction_1	1	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGGTTCACCTTACAA	NA	False	NA	NA	False	AGTAAA	-44	NA	135129156	135113968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_135114652_135116771_135116987_135129019
ENSMUSG00000028165.10_1	chr3	-	1339	1	ISM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	16173	2	15327	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATGTTTTCTTTTTTAT	NA	False	NA	-1	True	ATTAAA	-18	NA	135113513	135112174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_135112200_135113500
ENSMUSG00000028165.10_3	chr3	-	1220	2	ISM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	12725	1449	11879	-1449	3prime_fragment	FALSE	canonical	3	215	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGATAACTCTTGTTG	NA	False	NA	-7	True	NA	NA	NA	135116961	135113621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_135114652_135116771
ENSMUSG00000028167.16_0	chr3	+	1078	10	FSM	ENSMUSG00000028167.16	ENSMUST00000120397.8	1172	10	89	5	27	-2	multi-exon	FALSE	canonical	3	49	junction_1	10.4880884817015	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAGGAGTAGTTTTTTTT	NA	False	NA	16	True	AATAAA	-26	NA	134987070	135010182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_134987130_134991275_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
ENSMUSG00000028167.16_1	chr3	+	998	10	FSM	ENSMUSG00000028167.16	ENSMUST00000029817.11	1059	10	56	5	34	-2	multi-exon	FALSE	canonical	3	27	junction_1	15.3099660916801	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAGGAGTAGTTTTTTTT	NA	False	NA	16	True	AATAAA	-26	NA	134987077	135010182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_134987130_134991348_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
ENSMUSG00000028173.11_0	chr3	+	2579	12	FSM	ENSMUSG00000028173.11	ENSMUST00000068952.10	3559	12	33	947	-32	173	multi-exon	FALSE	canonical	3	17	junction_6	6.38697020736374	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCTTGCTTAAAATGTG	NA	False	NA	18	True	ATTAAA	-29	NA	159545341	159640712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886
ENSMUSG00000028173.11_2	chr3	+	2048	13	FSM	ENSMUSG00000028173.11	ENSMUST00000198878.2	2050	13	-2	4	-2	-4	multi-exon	FALSE	canonical	3	12	junction_12	7.78888096369861	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAAGTATTATTTCCGT	NA	False	NA	NA	False	NA	NA	NA	159545371	159644296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886_159640006_159644090
ENSMUSG00000028175.16_0	chr3	+	2463	11	FSM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	2	-494	2	-2	multi-exon	FALSE	canonical	3	16	junction_7	17.3262806164508	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACATTTATTTTTTTCAA	NA	False	NA	NA	False	AATAAA	-18	NA	159201096	159235590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159229413_159229587_159232167_159232345_159233580_159233767_159234635
ENSMUSG00000028175.16_1	chr3	+	3306	12	FSM	ENSMUSG00000028175.16	ENSMUST00000120272.8	3323	12	14	3	-4	-3	multi-exon	FALSE	canonical	3	37	junction_11	13.4778667659976	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGACATTTATTTTTTTCA	NA	False	NA	NA	False	AATAAA	-17	NA	159201083	159235589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159228162_159228994_159229413_159229587_159232167_159232345_159233580_159233767_159234635
ENSMUSG00000028175.16_13	chr3	+	1976	5	ISM	ENSMUSG00000028175.16	ENSMUST00000120272.8	3323	12	27439	2	27414	-2	3prime_fragment	FALSE	canonical	3	37	junction_4	12.2576506721313	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACATTTATTTTTTTCAA	NA	False	NA	NA	False	AATAAA	-18	NA	159228508	159235590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_159228994_159229413_159229587_159232167_159232345_159233580_159233767_159234635
ENSMUSG00000028175.16_9	chr3	+	2549	8	ISM	ENSMUSG00000028175.16	ENSMUST00000029825.14	2920	12	-4	5487	-4	-5370	intron_retention	FALSE	canonical	3	39	junction_7	11.423213029545	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAATGTTGCCCATATGT	NA	False	NA	NA	False	NA	NA	NA	159201083	159229726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159228162
ENSMUSG00000028179.13_2	chr3	-	1763	12	FSM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	16	36	-10	-36	multi-exon	FALSE	canonical	3	948	junction_5	60.9754048777046	954	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTTTTCTTAAATAAAT	NA	False	NA	-52	True	AATAAA	-13	NA	157630698	157599920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
ENSMUSG00000028180.19_0	chr3	+	2634	10	FSM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	216	74	0	0	multi-exon	TRUE	canonical	3	697	junction_8	81.8057017542553	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATCAAGTGTTGTTTAT	NA	False	NA	11	True	AATAAA	-12	NA	157240012	157253973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
ENSMUSG00000028180.19_1	chr3	+	2709	11	FSM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	-12	40	0	0	multi-exon	FALSE	canonical	3	77	junction_9	297.644569915193	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATCAAGTGTTGTTTAT	NA	False	NA	11	True	AATAAA	-12	NA	157240012	157253973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157251711_157251787_157252311
ENSMUSG00000028180.19_65	chr3	+	1461	1	ISM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	12716	74	6225	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATCAAGTGTTGTTTAT	NA	False	NA	11	True	AATAAA	-12	NA	157252512	157253973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_157252500_157254000
ENSMUSG00000028182.15_1	chr3	+	2598	3	FSM	ENSMUSG00000028182.15	ENSMUST00000195418.6	2148	3	-13	-437	-13	437	multi-exon	FALSE	canonical	2	4	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACAAATTTGACCCTGA	2772	False	NA	NA	False	AATAAA	-26	NA	154799057	154808700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_154799308_154804341_154804591_154806601
ENSMUSG00000028184.13_0	chr3	-	1045	1	ISM	ENSMUSG00000028184.13	ENSMUST00000198139.5	3005	8	11644	277	6075	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAGTAACGTGCACTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	148522540	148521495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_148521500_148522500
ENSMUSG00000028184.13_2	chr3	-	5762	20	FSM	ENSMUSG00000028184.13	ENSMUST00000200543.5	5509	20	-20	-233	-20	-4	multi-exon	FALSE	canonical	2	5	junction_19	7.16253719419116	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAGTAACGTGCACTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	148696211	148521495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_148523565_148528590_148528688_148529331_148529461_148532000_148532170_148534112_148534205_148539497_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047_148596262_148660198_148660372_148696075
ENSMUSG00000028184.13_5	chr3	-	6132	20	NIC	ENSMUSG00000028184.13	novel	5509	20	NA	NA	221	-4	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	5.8980253984794	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAGTAACGTGCACTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	148694731	148521495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_148523565_148528590_148528688_148529331_148529461_148532000_148532170_148534112_148534205_148539497_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047_148596262_148660198_148660372_148694225
ENSMUSG00000028184.13_6	chr3	-	4966	19	NNC	ENSMUSG00000028184.13	novel	5509	20	NA	NA	55549	-334	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_18	7.33333333333333	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAATATTGTGTCGAGCT	NA	False	NA	NA	False	ATTAAA	-21	NA	148604722	148522062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_148523565_148528590_148528688_148529331_148529461_148532000_148532170_148534112_148534205_148539497_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047_148596262_148604642
ENSMUSG00000028184.13_7	chr3	-	4547	17	NIC	ENSMUSG00000028184.13	novel	5615	22	NA	NA	-23374	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	9.82165178317782	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTAGTAACGTGCACTTT	NA	False	NA	-6	True	AATAAA	-13	NA	148564535	148521496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_148523565_148526608_148526662_148528590_148528688_148529331_148529461_148532000_148532170_148534112_148534205_148539497_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368
ENSMUSG00000028184.13_8	chr3	-	6356	20	NIC	ENSMUSG00000028184.13	novel	5509	20	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	7.74775456703585	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACGTGCACTTTTATGT	NA	False	NA	-1	True	AATAAA	-18	NA	148694984	148521491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_148523565_148528623_148528688_148529331_148529461_148532000_148532170_148534112_148534205_148539497_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047_148596262_148660198_148660372_148694225
ENSMUSG00000028184.13_9	chr3	-	5765	20	NNC	ENSMUSG00000028184.13	novel	5509	20	NA	NA	532	-6	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_19	6.88488649506014	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTAGTAACGTGCACTT	NA	False	NA	-7	True	AATAAA	-12	NA	148695659	148521497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_148523565_148528590_148528688_148529331_148529461_148532000_148532170_148534112_148534205_148539497_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047_148596262_148660198_148660372_148695518
ENSMUSG00000028187.11_1	chr3	-	1238	9	FSM	ENSMUSG00000028187.11	ENSMUST00000029838.11	1661	9	24	399	6	-11	multi-exon	FALSE	canonical	3	514	junction_1	36.008462547018	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCTGAAAATTTTTTAGG	NA	False	NA	-14	True	AATAAA	-14	NA	146227160	146212109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_146212331_146212826_146212954_146213268_146213451_146213896_146213980_146217896_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
ENSMUSG00000028189.13_0	chr3	+	2638	6	NIC	ENSMUSG00000028189.13	novel	2892	7	NA	NA	0	-14	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	10.6320270880016	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTATACAAAAGGTAAAAAT	5977	False	NA	NA	False	NA	NA	NA	146156247	146171512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_146156386_146160702_146160912_146163090_146163263_146164497_146164596_146165433_146165596_146169653
ENSMUSG00000028189.13_2	chr3	+	2785	7	FSM	ENSMUSG00000028189.13	ENSMUST00000061937.13	2892	7	18	89	-5	-11	multi-exon	FALSE	canonical	3	19	junction_1	4.91313432432789	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATACAAAAGGTAAAAATTAA	5972	False	NA	NA	False	NA	NA	NA	146156242	146171515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_146156386_146160101_146160241_146160702_146160912_146163090_146163263_146164497_146164596_146165433_146165596_146169653
ENSMUSG00000028189.13_4	chr3	+	1027	2	ISM	ENSMUSG00000028189.13	ENSMUST00000061937.13	2892	7	8630	1665	8607	-1587	3prime_fragment	FALSE	canonical	3	30	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGTTGCCATAACTTA	NA	False	NA	NA	False	GATAAA	-15	NA	146164854	146169939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_146165596_146169653
ENSMUSG00000028191.12_0	chr3	+	1832	3	FSM	ENSMUSG00000028191.12	ENSMUST00000029842.9	1949	3	43	74	43	-74	multi-exon	FALSE	canonical	3	334	junction_2	11.5	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGATGTGTCTGAGTCAG	NA	False	NA	13	True	NA	NA	NA	145630059	145640037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_145630271_145636160_145636450_145638705
ENSMUSG00000028191.12_5	chr3	+	1027	1	ISM	ENSMUSG00000028191.12	ENSMUST00000029842.9	1949	3	8990	78	8895	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAGTGATGTGTCTGAG	NA	False	NA	9	True	NA	NA	NA	145639006	145640033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_145639000_145640000
ENSMUSG00000028194.16_0	chr3	+	2701	6	FSM	ENSMUSG00000028194.16	ENSMUST00000029845.15	3764	6	52	1011	52	0	multi-exon	FALSE	canonical	3	249	junction_5	17.0105849399719	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTATGGTTGCCTTTGGGG	NA	False	NA	13	True	AATAAA	-18	NA	145464481	145599021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_145464920_145551459_145551560_145558005_145558080_145558911_145559032_145594838_145594983_145597196
ENSMUSG00000028194.16_10	chr3	+	2079	1	ISM	ENSMUSG00000028194.16	ENSMUST00000029845.15	3764	6	133524	0	81720	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTAGTGTCTGTCTCGT	NA	False	NA	9	True	AATAAA	-18	NA	145597953	145600032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_145598000_145600000
ENSMUSG00000028195.5_0	chr3	-	2014	5	FSM	ENSMUSG00000028195.5	ENSMUST00000029846.5	2019	5	2	3	2	-3	multi-exon	FALSE	canonical	3	41	junction_2	2.58602010819715	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATCTGAATGTATGTTG	NA	False	NA	NA	False	AATAAA	-13	NA	145355734	145352733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_145353724_145353951_145354167_145354287_145354633_145354976_145355191_145355484
ENSMUSG00000028199.19_0	chr3	+	2013	9	FSM	ENSMUSG00000028199.19	ENSMUST00000192462.6	2505	9	490	2	4	-2	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGCCCTTGTCTGTCTCG	NA	False	NA	14	True	AGTAAA	-14	NA	154302837	154328815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ENSMUSG00000028199.19_1	chr3	+	2230	9	NIC	ENSMUSG00000028199.19	novel	2505	9	NA	NA	5	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	57.5769865050265	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGCCCTTGTCTGTCTCG	NA	False	NA	14	True	AGTAAA	-14	NA	154302863	154328815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_154303165_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ENSMUSG00000028199.19_4	chr3	+	2111	9	NIC	ENSMUSG00000028199.19	novel	2505	9	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	62.745019722684	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGCCCTTGTCTGTCTCG	NA	False	NA	14	True	AGTAAA	-14	NA	154302839	154328815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_154302922_154310528_154310753_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ENSMUSG00000028207.19_2	chr4	-	4406	24	FSM	ENSMUSG00000028207.19	ENSMUST00000078139.13	6694	24	78	2210	2	-2210	multi-exon	TRUE	canonical	0	0	junction_21	108.084473020543	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAATTTTTCCTCGCTCTT	6	True	NA	-4	True	AATAAA	-17	NA	9669084	9451288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_9453446_9474897_9475032_9475389_9475482_9484471_9484608_9508626_9508765_9514588_9514679_9517635_9517735_9529885_9530023_9531914_9532066_9537678_9537766_9542224_9542311_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
ENSMUSG00000028207.19_4	chr4	-	4356	23	FSM	ENSMUSG00000028207.19	ENSMUST00000108340.9	6646	23	78	2212	2	-2212	multi-exon	FALSE	canonical	0	0	junction_20	115.972932507461	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAATTTTTCCTCGCTC	6	True	NA	-6	True	AATAAA	-15	NA	9669084	9451290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_9453446_9474897_9475032_9475389_9475482_9484471_9484608_9508626_9508765_9514588_9514679_9517635_9517735_9529885_9530023_9531914_9532066_9537678_9537766_9542224_9542311_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
ENSMUSG00000028207.19_58	chr4	-	2814	14	FSM	ENSMUSG00000028207.19	ENSMUST00000084915.11	2884	14	70	0	-6	0	multi-exon	FALSE	canonical	0	0	junction_11	124.875606744325	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	-2	True	NA	-4	True	AATAAA	-17	NA	9669092	9575266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
ENSMUSG00000028207.19_59	chr4	-	2759	13	FSM	ENSMUSG00000028207.19	ENSMUST00000108337.8	2836	13	77	0	1	0	multi-exon	FALSE	canonical	0	0	junction_10	142.503411265212	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	5	True	NA	-4	True	AATAAA	-17	NA	9669085	9575266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
ENSMUSG00000028211.12_0	chr4	+	5373	4	FSM	ENSMUSG00000028211.12	ENSMUST00000029865.4	5404	4	24	7	11	-7	multi-exon	FALSE	canonical	3	122	junction_3	56.8409085860605	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTAACATGTGGAGGATT	22	False	NA	9	True	AATAAA	-10	NA	11156454	11174372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11169709
ENSMUSG00000028211.12_1	chr4	+	5409	5	FSM	ENSMUSG00000028211.12	ENSMUST00000132010.8	5432	5	17	6	14	-6	multi-exon	FALSE	canonical	3	82	junction_4	77.6997425993163	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAACATGTGGAGGATTC	25	False	NA	10	True	AATAAA	-11	NA	11156457	11174373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11167896_11167935_11169709
ENSMUSG00000028211.12_11	chr4	+	2995	1	ISM	ENSMUSG00000028211.12	ENSMUST00000029865.4	5404	4	14951	3	6923	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATGTGGAGGATTCTTT	1454	False	NA	13	True	AATAAA	-14	NA	11171381	11174376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_11171400_11174400
ENSMUSG00000028212.17_4	chr4	+	2611	12	FSM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	54	243	48	-236	multi-exon	FALSE	canonical	3	208	junction_1	27.8285779741998	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTGAAAAAAAATTAAC	1	True	NA	-12	True	TTTAAA	-5	NA	11191783	11204439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_11191816_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ENSMUSG00000028212.17_5	chr4	+	2597	12	NIC	ENSMUSG00000028212.17	novel	2908	12	NA	NA	47	-243	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	73.3862193472497	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAATTGAAAAAA	0	True	NA	-19	True	TATAAA	-40	NA	11191782	11204432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_11191808_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ENSMUSG00000028212.17_6	chr4	+	2601	12	FSM	ENSMUSG00000028212.17	ENSMUST00000029866.16	3006	12	58	347	48	-243	multi-exon	FALSE	canonical	3	47	junction_2	64.9822607707368	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAATTGAAAAAA	1	True	NA	-19	True	TATAAA	-40	NA	11191783	11204432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_11191816_11192680_11192718_11192817_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ENSMUSG00000028214.14_1	chr4	+	2054	5	FSM	ENSMUSG00000028214.14	ENSMUST00000108304.9	2006	5	-57	9	-57	-9	multi-exon	FALSE	canonical	1	1	junction_2	2.17944947177034	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGAAAGCATTCTGCTA	9561	False	NA	NA	False	AATAAA	-17	NA	11704399	11714743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_11704567_11705904_11706242_11711138_11711216_11711969_11712175_11713475
ENSMUSG00000028218.20_0	chr4	-	1120	8	NNC	ENSMUSG00000028218.20	novel	648	7	NA	NA	51	52908	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	130.899556445204	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGATTACACAGTCTTTCT	12	True	NA	NA	False	ATTAAA	-36	NA	12171820	12100500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_12100753_12155648_12155769_12157650_12157765_12164087_12164193_12168222_12168325_12168964_12169034_12170983_12171219_12171697
ENSMUSG00000028218.20_4	chr4	-	1119	8	NIC	ENSMUSG00000028218.20	novel	1639	9	NA	NA	54	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	135.606423302203	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTACATAGTCTTTCTTT	15	True	NA	-43	True	ATTAAA	-38	NA	12171817	12153724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12168222_12168325_12168964_12169034_12170983_12171219_12171697
ENSMUSG00000028221.4_1	chr4	+	2257	7	FSM	ENSMUSG00000028221.4	ENSMUST00000029875.4	2339	7	166	-84	166	84	multi-exon	FALSE	canonical	3	286	junction_4	16.4688257693808	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCACTTTGTTCTATT	-26	True	NA	5	True	AATAAA	-12	NA	14864241	14915260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_14864438_14886533_14886683_14892392_14892500_14893500_14893625_14902486_14902540_14912431_14912523_14913723
ENSMUSG00000028221.4_12	chr4	+	1171	1	Genic_Genomic	ENSMUSG00000028221.4	novel	NA	NA	NA	NA	50013	83	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAATCACTTTGTTCTAT	NA	False	NA	4	True	AATAAA	-11	NA	14914088	14915259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_14914100_14915300
ENSMUSG00000028223.9_0	chr4	-	1143	10	FSM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	128	1688	-104	-1688	multi-exon	FALSE	canonical	3	139	junction_6	12.6207745648706	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGTAGTTCTGAGGAT	-6	True	NA	-29	True	AATAAA	-15	NA	15945379	15918927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913_15931001_15931124_15931183_15932892_15933096_15945282
ENSMUSG00000028223.9_1	chr4	-	787	7	ISM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	14526	1667	13508	-1667	3prime_fragment	FALSE	canonical	3	139	junction_6	10.816653826392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCAGAGTGTCTGCTCT	NA	False	NA	-8	True	AATAAA	-36	NA	15930981	15918906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913
ENSMUSG00000028223.9_3	chr4	-	1048	9	ISM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	12418	1680	11400	-1680	3prime_fragment	FALSE	canonical	3	139	junction_6	12.3490890352285	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCTGAGGATCAAACCCA	NA	False	NA	-21	True	AATAAA	-23	NA	15933089	15918919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913_15931001_15931124_15931183_15932892
ENSMUSG00000028224.15_0	chr4	+	2494	16	FSM	ENSMUSG00000028224.15	ENSMUST00000029879.15	2533	16	37	2	-5	-2	multi-exon	TRUE	canonical	3	165	junction_3	27.9629914152418	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCTTTTGTGTGGTAAC	-8	True	NA	7	True	AATAAA	-13	NA	15957961	15992587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
ENSMUSG00000028224.15_1	chr4	+	2412	16	NNC	ENSMUSG00000028224.15	novel	2533	16	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	53.2213825032341	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCTTTTGTGTGGTAAC	-8	True	NA	7	True	AATAAA	-13	NA	15957961	15992587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_15958111_15962310_15962445_15963771_15963921_15964328_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
ENSMUSG00000028228.6_1	chr4	-	5626	16	FSM	ENSMUSG00000028228.6	ENSMUST00000029885.5	5648	16	20	2	-5	-2	multi-exon	FALSE	canonical	3	122	junction_5	15.541199724889	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACATAGCTGTGTTTGGT	7	True	NA	-8	True	AATAAA	-13	NA	19570088	19519255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_19523295_19525002_19525240_19526283_19526418_19528059_19528112_19528187_19528243_19532398_19532533_19533054_19533115_19535211_19535299_19536526_19536626_19540740_19540831_19543253_19543338_19550587_19550660_19552243_19552319_19553717_19553898_19555361_19555502_19570000
ENSMUSG00000028228.6_2	chr4	-	2749	1	ISM	ENSMUSG00000028228.6	ENSMUST00000029885.5	5648	16	48105	1	21675	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACATAGCTGTGTTTGGTT	4584	False	NA	-7	True	AATAAA	-14	NA	19522003	19519254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_19519300_19522000
ENSMUSG00000028228.6_7	chr4	-	5314	14	ISM	ENSMUSG00000028228.6	ENSMUST00000029885.5	5648	16	16293	4	-10137	-4	3prime_fragment	FALSE	canonical	3	122	junction_5	15.9492538453952	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAACATAGCTGTGTTTG	NA	False	NA	-10	True	AATAAA	-11	NA	19553815	19519257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_19523295_19525002_19525240_19526283_19526418_19528059_19528112_19528187_19528243_19532398_19532533_19533054_19533115_19535211_19535299_19536526_19536626_19540740_19540831_19543253_19543338_19550587_19550660_19552243_19552319_19553717
ENSMUSG00000028229.12_0	chr4	+	1063	10	FSM	ENSMUSG00000028229.12	ENSMUST00000029888.4	1734	10	-55	726	-10	-726	multi-exon	FALSE	canonical	3	39	junction_9	10.5736686696625	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGACTGTATGGCTTTTT	-26	True	NA	9	True	TATAAA	-17	NA	19575151	19606206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601444_19602642_19602674_19605402_19605537_19606084
ENSMUSG00000028229.12_2	chr4	+	2337	9	NIC	ENSMUSG00000028229.12	novel	1734	10	NA	NA	-87	-728	intron_retention	FALSE	canonical	3	39	junction_8	10.5089247784919	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCACGACTGTATGGCTTT	3	True	NA	7	True	TATAAA	-15	NA	19575074	19606204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19602674_19605402_19605537_19606084
ENSMUSG00000028229.12_7	chr4	+	1410	8	ISM	ENSMUSG00000028229.12	ENSMUST00000029888.4	1734	10	-75	3676	-30	-3676	5prime_fragment	FALSE	canonical	3	44	junction_7	8.46601850858803	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATAACACTGTTGCTTTCC	-2	True	NA	NA	False	GATAAA	-12	NA	19575131	19603256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601444_19602642
ENSMUSG00000028232.14_0	chr4	-	2400	8	NNC	ENSMUSG00000028232.14	novel	2773	9	NA	NA	0	-236	intron_retention	FALSE	canonical	0	0	junction_6	25.7840323946937	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTCTAGTAAAAATGTTAT	-11	True	NA	NA	False	AATAAA	-17	NA	3574809	3549276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570330_3570373_3574703
ENSMUSG00000028232.14_1	chr4	-	2410	8	FSM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	44	236	0	-236	multi-exon	FALSE	canonical	3	50	junction_4	11.6233403467474	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTCTAGTAAAAATGTTAT	-11	True	NA	NA	False	AATAAA	-17	NA	3574809	3549276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570320_3570373_3574703
ENSMUSG00000028232.14_8	chr4	-	1930	3	ISM	ENSMUSG00000028232.14	ENSMUST00000154922.8	2773	9	19968	237	-2684	-237	3prime_fragment	FALSE	canonical	3	75	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCTCTAGTAAAAATGTTA	NA	False	NA	NA	False	AATAAA	-16	NA	3554841	3549277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_3550580_3551751_3551892_3554353
ENSMUSG00000028233.7_0	chr4	+	4303	13	FSM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	15	9	15	-9	multi-exon	FALSE	canonical	2	97	junction_11	33.5186515241887	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTTATCTCAAATTTTGT	-3	True	NA	2	True	NA	NA	NA	3574889	3616610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451_3586266_3589146_3589265_3591227_3591315_3593459_3593638_3595356_3595658_3598513_3598664_3602146_3602291_3604698_3604916_3605822_3605902_3614858
ENSMUSG00000028233.7_17	chr4	+	3467	10	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	10954	5	-7757	-5	3prime_fragment	FALSE	canonical	2	97	junction_8	37.9297596441985	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTCAAATTTTGTTTTA	NA	False	NA	6	True	NA	NA	NA	3585828	3616614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_3586266_3589146_3589265_3591227_3591315_3593459_3593638_3595356_3595658_3598513_3598664_3602146_3602291_3604698_3604916_3605822_3605902_3614858
ENSMUSG00000028234.7_1	chr4	-	386	3	FSM	ENSMUSG00000028234.7	ENSMUST00000103009.5	582	3	196	0	-59	0	multi-exon	FALSE	canonical	3	6653	junction_2	831.5	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTGCTGGCTTTTGTT	306	False	NA	-40	True	AATAAA	-15	NA	3835292	3834472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_3834684_3834935_3835010_3835191
ENSMUSG00000028234.7_2	chr4	-	498	4	FSM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	65	3143	65	-4	multi-exon	FALSE	canonical	3	6653	junction_2	782.301021914767	1297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCAAATTTTGCTGGCTTT	-2	True	NA	-44	True	AATAAA	-11	NA	3835600	3834476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_3834684_3834935_3835010_3835191_3835292_3835483
ENSMUSG00000028234.7_4	chr4	-	255	2	FSM	ENSMUSG00000028234.7	ENSMUST00000130128.2	512	2	254	3	254	0	multi-exon	FALSE	canonical	3	8316	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTGCTGGCTTTTGTT	619	False	NA	-40	True	AATAAA	-15	NA	3834979	3834472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_3834684_3834935
ENSMUSG00000028234.7_5	chr4	-	154	1	ISM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	1037	3141	605	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAATTTTGCTGGCTTTTG	970	False	NA	-42	True	AATAAA	-13	NA	3834628	3834474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_3834500_3834600
ENSMUSG00000028243.6_0	chr4	+	1537	8	FSM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	9	5096	9	-5096	multi-exon	TRUE	canonical	3	103	junction_2	16.4614577676685	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAACTGTCATAAACTGAAT	-1	True	NA	NA	False	TATAAA	-4	NA	6191106	6216592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_6191214_6196410_6196515_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
ENSMUSG00000028243.6_14	chr4	+	3101	1	ISM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	27479	11	27479	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGAAGCCTCCTTTCGTGC	NA	False	NA	11	True	AATAAA	-13	NA	6218576	6221677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_6218600_6221700
ENSMUSG00000028245.16_1	chr4	-	3500	31	FSM	ENSMUSG00000028245.16	ENSMUST00000029910.12	3507	31	0	7	0	-7	multi-exon	FALSE	canonical	3	82	junction_12	11.571804814577	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAAGCACTCTTATCTT	25	True	NA	NA	False	ATTAAA	-14	NA	6454271	6396213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_6396818_6398318_6398429_6398544_6398648_6398808_6398960_6406786_6406871_6408557_6408682_6409089_6409158_6409843_6409912_6413567_6413627_6414963_6415073_6416499_6416664_6417164_6417208_6417745_6417878_6418260_6418382_6418471_6418524_6419863_6419928_6420049_6420141_6421056_6421137_6423321_6423499_6424878_6424988_6426401_6426474_6428391_6428522_6432679_6432733_6432829_6432878_6433262_6433335_6435056_6435108_6437741_6437779_6437853_6437922_6438042_6438122_6440899_6440990_6453984
ENSMUSG00000028246.14_0	chr4	+	6014	5	FSM	ENSMUSG00000028246.14	ENSMUST00000123481.2	4465	5	-27	-1522	1	1522	multi-exon	FALSE	canonical	2	7	junction_3	3.56195171219375	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGCTGGTAGGGATCAG	1	True	NA	NA	False	AATAAA	-11	NA	21931329	21998361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_21931830_21936632_21936769_21948691_21948889_21982385_21982503_21993297
ENSMUSG00000028246.14_1	chr4	+	2040	6	FSM	ENSMUSG00000028246.14	ENSMUST00000029908.8	2627	6	1	586	1	19	multi-exon	FALSE	canonical	2	5	junction_3	4.02988833592198	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTGACTAGCTGTGTGGT	3	True	NA	NA	False	NA	NA	NA	21931331	21994165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_21931830_21936632_21936769_21948691_21948889_21958443_21958668_21982385_21982503_21993297
ENSMUSG00000028246.14_3	chr4	+	4390	1	Genic_Genomic	ENSMUSG00000028246.14	novel	NA	NA	NA	NA	35516	1522	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGCTGGTAGGGATCAG	NA	False	NA	NA	False	AATAAA	-11	NA	21993971	21998361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_21994000_21998400
ENSMUSG00000028247.3_0	chr4	+	1245	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	6	1400	6	-1400	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAATTTCTGTGTCACC	-4	True	NA	16	True	AATAAA	-18	NA	21879678	21910762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
ENSMUSG00000028247.3_8	chr4	+	133	1	ISM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	30952	1405	11913	-1405	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAGAAAAATTTCTGTG	NA	False	NA	11	True	AATAAA	-13	NA	21910624	21910757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_21910600_21910800
ENSMUSG00000028248.16_1	chr4	+	4856	9	NIC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	0	-3	intron_retention	FALSE	canonical	3	402	junction_3	32.8785644455472	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTTGCACCTTAATTT	-1	True	NA	10	True	AATAAA	-22	NA	21848057	21875253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21871609_21873585
ENSMUSG00000028248.16_2	chr4	+	3088	11	ISM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	475	1222	0	-3	intron_retention	FALSE	canonical	3	310	junction_8	50.2622124463299	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTTGCACCTTAATTT	-1	True	NA	10	True	AATAAA	-22	NA	21848057	21875253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585
ENSMUSG00000028248.16_4	chr4	+	3824	10	NIC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	0	-3	intron_retention	FALSE	canonical	3	402	junction_3	31.0876895964374	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTTGCACCTTAATTT	-1	True	NA	10	True	AATAAA	-22	NA	21848057	21875253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21870406_21871437_21871609_21873585
ENSMUSG00000028248.16_5	chr4	+	2848	12	FSM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	475	1222	0	-3	multi-exon	FALSE	canonical	3	306	junction_11	60.0897400518935	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTTGCACCTTAATTT	-1	True	NA	10	True	AATAAA	-22	NA	21848057	21875253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585_21874673_21874912
ENSMUSG00000028248.16_81	chr4	+	2427	2	ISM	ENSMUSG00000028248.16	ENSMUST00000098238.9	4407	11	22795	1214	-184	-3	3prime_fragment	FALSE	canonical	3	435	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTTGCACCTTAATTT	1153	False	NA	10	True	AATAAA	-22	NA	21870849	21875253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_21871609_21873585
ENSMUSG00000028248.16_85	chr4	+	1886	1	NIC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	107	-271	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAATGGCTGTTTACAGT	199	False	NA	0	True	AATAAA	-23	NA	21874310	21876196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_21874300_21876200
ENSMUSG00000028249.16_0	chr4	+	2054	9	FSM	ENSMUSG00000028249.16	ENSMUST00000103008.12	2086	9	28	4	-3	-4	multi-exon	FALSE	canonical	3	130	junction_4	110.946425697271	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATTTCCGTCTGTCTGTG	-4	True	NA	9	True	ATTAAA	-14	NA	6365704	6395651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385028_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUSG00000028249.16_1	chr4	+	2058	9	FSM	ENSMUSG00000028249.16	ENSMUST00000029912.11	2745	9	55	632	-3	-3	multi-exon	FALSE	canonical	3	359	junction_4	40.7944542799631	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTCCGTCTGTCTGTGC	-4	True	NA	10	True	ATTAAA	-15	NA	6365704	6395652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385025_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUSG00000028249.16_8	chr4	+	2004	8	ISM	ENSMUSG00000028249.16	ENSMUST00000029912.11	2745	9	11425	633	234	-4	3prime_fragment	FALSE	canonical	3	359	junction_3	43.6100531379392	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATTTCCGTCTGTCTGTG	9110	False	NA	9	True	ATTAAA	-14	NA	6377074	6395651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_6377143_6378965_6379048_6380989_6381100_6385025_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUSG00000028249.16_9	chr4	+	2000	8	ISM	ENSMUSG00000028249.16	ENSMUST00000103008.12	2086	9	11398	5	234	-5	3prime_fragment	FALSE	canonical	3	130	junction_3	118.070715579906	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAATTTCCGTCTGTCTGT	9110	False	NA	8	True	ATTAAA	-13	NA	6377074	6395650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_6377143_6378965_6379048_6380989_6381100_6385028_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUSG00000028251.6_0	chr4	-	1549	4	FSM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	35	4	35	-4	multi-exon	FALSE	canonical	3	232	junction_1	27.288581250528	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCATGCATGTATTTCT	18	True	NA	-4	True	AATAAA	-20	NA	21767177	21757385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_21758476_21759369_21759530_21759622_21759794_21767049
ENSMUSG00000028252.21_0	chr4	+	3325	12	FSM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	33	7	1	-7	multi-exon	FALSE	canonical	3	192	junction_11	80.4513096421711	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTTTTCTTGTTTCTTT	-1	True	NA	NA	False	NA	NA	NA	21727758	21750539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
ENSMUSG00000028252.21_1	chr4	+	1380	12	FSM	ENSMUSG00000028252.21	ENSMUST00000108240.3	1406	12	4	22	1	-22	multi-exon	FALSE	canonical	3	256	junction_11	64.4238290701982	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAATAAAAACATAAAACC	-1	True	NA	-10	True	NA	NA	NA	21727758	21747940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
ENSMUSG00000028252.21_2	chr4	+	3414	13	FSM	ENSMUSG00000028252.21	ENSMUST00000065928.11	3484	13	63	7	-3	-7	multi-exon	FALSE	canonical	3	29	junction_12	125.983023547707	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTTTTCTTGTTTCTTT	4	True	NA	NA	False	NA	NA	NA	21727763	21750539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482_21747577_21748136
ENSMUSG00000028252.21_28	chr4	+	1715	1	ISM	ENSMUSG00000028252.21	ENSMUST00000065928.11	3484	13	21124	7	21058	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTTTTCTTGTTTCTTT	1102	False	NA	NA	False	NA	NA	NA	21748824	21750539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_21748800_21750500
ENSMUSG00000028256.17_0	chr3	+	2274	15	NNC	ENSMUSG00000028256.17	novel	2239	15	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_3	24.2331363624105	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTTAATAACAGTATAAG	NA	False	NA	NA	False	AATAAA	-15	NA	144824347	144859648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_144824548_144829971_144830137_144831853_144831987_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ENSMUSG00000028256.17_2	chr3	+	2415	16	FSM	ENSMUSG00000028256.17	ENSMUST00000106192.9	2425	16	-18	28	-17	-2	multi-exon	FALSE	canonical	3	28	junction_1	23.1944437791084	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTTAATAACAGTATAAG	NA	False	NA	NA	False	AATAAA	-15	NA	144824331	144859648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ENSMUSG00000028256.17_24	chr3	+	2778	3	NIC	ENSMUSG00000028256.17	novel	485	4	NA	NA	-2088	-2	intron_retention	FALSE	canonical	3	109	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTTAATAACAGTATAAG	NA	False	NA	NA	False	AATAAA	-15	NA	144852690	144859648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_144854839_144856720_144856847_144859144
ENSMUSG00000028256.17_3	chr3	+	2419	16	NNC	ENSMUSG00000028256.17	novel	2425	16	NA	NA	-17	-2	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	18.7538440503985	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTTAATAACAGTATAAG	NA	False	NA	NA	False	AATAAA	-15	NA	144824331	144859648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_144824548_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ENSMUSG00000028256.17_35	chr3	+	2623	16	NIC	ENSMUSG00000028256.17	novel	913	7	NA	NA	-41	-4	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	28.4320632776136	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTAATTTTAATAACAG	NA	False	NA	NA	False	AATAAA	-9	NA	144824693	144859642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_144825120_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ENSMUSG00000028256.17_5	chr3	+	2268	15	FSM	ENSMUSG00000028256.17	ENSMUST00000029920.15	2239	15	-31	2	0	-2	multi-exon	FALSE	canonical	3	28	junction_1	27.9021614260419	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTTAATAACAGTATAAG	NA	False	NA	NA	False	AATAAA	-15	NA	144824349	144859648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ENSMUSG00000028261.14_0	chr4	+	1314	2	FSM	ENSMUSG00000028261.14	ENSMUST00000146721.2	2358	2	-25	1069	23	-1049	multi-exon	FALSE	canonical	3	446	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATTAAATAATTTTATA	-14	True	NA	NA	False	TTTAAA	-9	NA	24898105	24902436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_24898677_24901693
ENSMUSG00000028261.14_1	chr4	+	2100	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	25	1507	-23	9	multi-exon	FALSE	canonical	3	446	junction_2	23.5	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTAGCCCACTTTTCTGG	-12	True	NA	3	True	AATAAA	-16	NA	24898107	24903494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_24898303_24898572_24898677_24901693
ENSMUSG00000028266.18_1	chr3	-	1635	5	FSM	ENSMUSG00000028266.18	ENSMUST00000120539.8	1669	5	4	30	4	-30	multi-exon	FALSE	canonical	3	21	junction_4	8.32165848854662	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACTTAAAAGAAAAAAT	NA	False	NA	-31	True	TTTAAA	-5	NA	143910977	143894320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_143895067_143899656_143899813_143900167_143900265_143907573_143907813_143910580
ENSMUSG00000028266.18_4	chr3	-	1155	4	FSM	ENSMUSG00000028266.18	ENSMUST00000121112.6	1447	4	347	-55	315	-47	multi-exon	FALSE	canonical	3	31	junction_2	4.78423336480244	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGTGTATTTAAATAATAAA	NA	False	NA	-48	True	AAGAAA	-45	NA	143907746	143894337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_143895067_143899656_143899813_143900167_143900265_143907573
ENSMUSG00000028271.10_0	chr3	+	1255	7	FSM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	183	17	5	-17	multi-exon	FALSE	canonical	3	152	junction_1	21.5129160170246	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATTTAAAACCAAAGTT	NA	False	NA	-9	True	ATTAAA	-19	NA	142470988	142489350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_142471050_142477146_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
ENSMUSG00000028271.10_2	chr3	+	1195	6	ISM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	6340	17	6162	-17	3prime_fragment	FALSE	canonical	3	174	junction_5	16.5891530826622	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATTTAAAACCAAAGTT	NA	False	NA	-9	True	ATTAAA	-19	NA	142477145	142489350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
ENSMUSG00000028271.10_4	chr3	+	1062	5	ISM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	13167	21	12989	-21	3prime_fragment	FALSE	canonical	3	174	junction_4	17.8518206354422	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAATTTAAAACCAA	NA	False	NA	-13	True	ATTAAA	-15	NA	142483972	142489346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
ENSMUSG00000028273.16_0	chr3	-	4988	13	FSM	ENSMUSG00000028273.16	ENSMUST00000029941.16	5016	13	27	1	27	-1	multi-exon	FALSE	canonical	3	150	junction_4	21.3476514451174	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACGCCTGGCCTTTTT	7030	False	NA	-5	True	AATAAA	-18	NA	142101427	141945351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_141948531_141950656_141950773_141953055_141953177_141955090_141955272_141964890_141965054_141983577_141983763_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473_142097612_142101346
ENSMUSG00000028273.16_18	chr3	-	4908	12	ISM	ENSMUSG00000028273.16	ENSMUST00000029941.16	5016	13	3841	2	-2	-2	3prime_fragment	FALSE	canonical	3	150	junction_4	21.9560040923315	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGCACGCCTGGCCTTTT	NA	False	NA	-6	True	AATAAA	-17	NA	142097613	141945352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_141948531_141950656_141950773_141953055_141953177_141955090_141955272_141964890_141965054_141983577_141983763_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473
ENSMUSG00000028273.16_2	chr3	-	2314	1	ISM	ENSMUSG00000028273.16	ENSMUST00000029941.16	5016	13	153789	1	4645	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACGCCTGGCCTTTTT	NA	False	NA	-5	True	AATAAA	-18	NA	141947665	141945351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_141945400_141947700
ENSMUSG00000028273.16_4	chr3	-	4661	13	NIC	ENSMUSG00000028273.16	novel	5016	13	NA	NA	27	-1	combination_of_known_junctions	FALSE	canonical	3	42	junction_9	45.7355775688419	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACGCCTGGCCTTTTT	7030	False	NA	-5	True	AATAAA	-18	NA	142101427	141945351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_141948531_141950656_141950773_141953055_141953177_141955090_141955272_141964890_141965054_141983577_141983763_142009703_142009741_142010057_142010231_142017883_142017976_142020166_142020210_142058494_142058647_142097473_142097612_142101346
ENSMUSG00000028274.18_0	chr4	+	4109	16	FSM	ENSMUSG00000028274.18	ENSMUST00000108153.9	4157	16	34	14	17	-14	multi-exon	TRUE	canonical	3	214	junction_12	34.6965256025569	420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGATGTAACACACCTGTG	-2	True	NA	-3	True	AATAAA	-4	NA	33310344	33502600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500237
ENSMUSG00000028277.14_2	chr4	+	3493	8	FSM	ENSMUSG00000028277.14	ENSMUST00000124992.8	3530	8	23	14	23	-14	multi-exon	FALSE	canonical	3	77	junction_6	15.4813910675932	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAAAAACTAAGTTATT	-9	True	NA	14	True	AATAAA	-24	NA	33031438	33052349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_33031617_33036708_33036783_33038198_33038331_33040732_33040818_33041355_33041462_33043856_33043987_33045079_33045200_33049681
ENSMUSG00000028277.14_3	chr4	+	1501	7	NIC	ENSMUSG00000028277.14	novel	3530	8	NA	NA	31	-1878	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	28.5214344348636	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAGATCTTTGTTATATT	-1	True	NA	NA	False	NA	NA	NA	33031446	33050485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_33031617_33036708_33036783_33038198_33038331_33040732_33040818_33041355_33041462_33043856_33043987_33049681
ENSMUSG00000028277.14_7	chr4	+	2198	1	ISM	ENSMUSG00000028277.14	ENSMUST00000124992.8	3530	8	18741	9	13429	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTAAGTTATTTACTG	4975	False	NA	19	True	AATAAA	-29	NA	33050156	33052354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_33050200_33052400
ENSMUSG00000028278.15_0	chr4	+	4715	7	FSM	ENSMUSG00000028278.15	ENSMUST00000098190.10	5008	7	285	8	-132	-8	multi-exon	FALSE	canonical	3	113	junction_4	9.38823140367177	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAACCTCTTGAAGTG	-4	True	NA	-4	True	AATAAA	-11	NA	32983321	33022172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_32983608_32995801_32996098_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646
ENSMUSG00000028278.15_14	chr4	+	2652	1	ISM	ENSMUSG00000028278.15	ENSMUST00000098190.10	5008	7	36484	8	14325	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAACCTCTTGAAGTG	NA	False	NA	-4	True	AATAAA	-11	NA	33019520	33022172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_33019500_33022200
ENSMUSG00000028278.15_9	chr4	+	4364	6	ISM	ENSMUSG00000028278.15	ENSMUST00000029946.14	5055	8	12712	8	-9329	-8	3prime_fragment	FALSE	canonical	3	113	junction_3	10.2683981223947	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAACCTCTTGAAGTG	NA	False	NA	-4	True	AATAAA	-11	NA	32995866	33022172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32996098_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646
ENSMUSG00000028280.10_0	chr4	+	1874	6	ISM	ENSMUSG00000028280.10	ENSMUST00000029947.6	2286	10	19816	4	19816	-4	3prime_fragment	FALSE	canonical	3	14	junction_2	4.22374241638857	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGCATGATGTCATCACT	NA	False	NA	4	True	AATAAA	-11	NA	33152336	33163584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_33152637_33157059_33157143_33158036_33158178_33160116_33160270_33161629_33161827_33162584
ENSMUSG00000028280.10_1	chr4	+	1074	5	ISM	ENSMUSG00000028280.10	ENSMUST00000029947.6	2286	10	19785	1593	19785	-1593	internal_fragment	FALSE	canonical	3	14	junction_2	4.7169905660283	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCTTTAAAAAACTTTTAT	NA	False	NA	NA	False	NA	NA	NA	33152305	33161995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_33152637_33157059_33157143_33158036_33158178_33160116_33160270_33161629
ENSMUSG00000028282.13_0	chr4	+	6584	11	FSM	ENSMUSG00000028282.13	ENSMUST00000178925.8	6557	11	-28	1	-6	-1	multi-exon	FALSE	canonical	3	150	junction_1	42.596243965871	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATTAGTATGCTTCT	-4	True	NA	6	True	AATAAA	-19	NA	32615444	32653264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_32615493_32624083_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363_32641559_32643539_32646661_32648026_32648127_32649172_32649258_32652673
ENSMUSG00000028282.13_1	chr4	+	6498	10	NIC	ENSMUSG00000028282.13	novel	6557	11	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	3	27	junction_1	77.5370878999205	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATTAGTATGCTTCT	-1	True	NA	6	True	AATAAA	-19	NA	32615447	32653264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_32615493_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363_32641559_32643539_32646661_32648026_32648127_32649172_32649258_32652673
ENSMUSG00000028282.13_18	chr4	+	6537	10	ISM	ENSMUSG00000028282.13	ENSMUST00000029950.10	6799	11	8605	1	-1	-1	3prime_fragment	FALSE	canonical	3	217	junction_4	29.3938769133981	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATTAGTATGCTTCT	95	False	NA	6	True	AATAAA	-19	NA	32624082	32653264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363_32641559_32643539_32646661_32648026_32648127_32649172_32649258_32652673
ENSMUSG00000028282.13_22	chr4	+	5172	5	ISM	ENSMUSG00000028282.13	ENSMUST00000029950.10	6799	11	24806	1	16200	-1	3prime_fragment	FALSE	canonical	3	231	junction_1	33.1247641501038	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATTAGTATGCTTCT	NA	False	NA	6	True	AATAAA	-19	NA	32640283	32653264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32641559_32643539_32646661_32648026_32648127_32649172_32649258_32652673
ENSMUSG00000028282.13_25	chr4	+	2935	4	ISM	ENSMUSG00000028282.13	ENSMUST00000029950.10	6799	11	29024	1	20418	-1	3prime_fragment	FALSE	canonical	3	269	junction_2	25.694789787469	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATTAGTATGCTTCT	NA	False	NA	6	True	AATAAA	-19	NA	32644501	32653264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32646661_32648026_32648127_32649172_32649258_32652673
ENSMUSG00000028282.13_7	chr4	+	6791	11	FSM	ENSMUSG00000028282.13	ENSMUST00000029950.10	6799	11	6	2	6	-2	multi-exon	FALSE	canonical	3	20	junction_1	76.4659401302305	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTATTAGTATGCTTC	1	True	NA	5	True	AATAAA	-18	NA	32615483	32653263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_32615740_32624083_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363_32641559_32643539_32646661_32648026_32648127_32649172_32649258_32652673
ENSMUSG00000028284.14_1	chr4	+	3083	17	FSM	ENSMUSG00000028284.14	ENSMUST00000037607.11	5773	17	19	2671	-4	1236	multi-exon	FALSE	canonical	3	147	junction_6	19.7680890262564	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATAAATCCCTAAGAT	-5	True	NA	NA	False	AATAAA	-10	NA	31964115	32020796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_31964383_31974822_31974934_31977323_31977390_31978430_31978477_31979735_31979875_31981457_31981583_31985685_31985815_31988588_31988720_31989933_31990016_31991712_31991844_31992386_31992517_31994873_31994955_32002088_32002154_32010315_32010422_32015938_32016001_32017036_32017153_32019500
ENSMUSG00000028284.14_38	chr4	+	1911	1	ISM	ENSMUSG00000028284.14	ENSMUST00000037607.11	5773	17	56401	1059	28025	-1059	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAGGAATGGTAGCTGGC	4950	False	NA	17	True	AATAAA	-26	NA	32020497	32022408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32020500_32022400
ENSMUSG00000028284.14_4	chr4	+	4612	16	FSM	ENSMUSG00000028284.14	ENSMUST00000080933.13	5669	16	-12	1069	11	-1069	multi-exon	TRUE	canonical	3	14	junction_11	45.1522855333912	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGCTGGTATGTAGGAAT	-13	True	NA	7	True	AATAAA	-16	NA	31964107	32022398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_31964383_31974822_31974934_31977323_31977390_31978430_31978477_31979735_31979875_31981457_31981583_31985685_31985815_31988588_31988720_31989933_31990016_31991712_31991844_31992386_31992517_32002088_32002154_32010315_32010422_32015938_32016001_32017036_32017153_32019500
ENSMUSG00000028289.13_0	chr4	+	3682	17	FSM	ENSMUSG00000028289.13	ENSMUST00000108191.2	6615	17	-200	3133	-81	-2449	multi-exon	TRUE	canonical	1	1	junction_9	6.28987281270456	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCAATGAAATATTTTC	233	False	NA	NA	False	AATAAA	-19	NA	28813049	28964366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_28813481_28817444_28817510_28820998_28821669_28870556_28870713_28871660_28871997_28935703_28935829_28938595_28938780_28942585_28942695_28943322_28943379_28947539_28947654_28948597_28948784_28949328_28949391_28950358_28950569_28951262_28951413_28961288_28961483_28962409_28962566_28963888
ENSMUSG00000028289.13_2	chr4	+	5300	17	FSM	ENSMUSG00000028289.13	ENSMUST00000029964.12	6746	17	32	1414	11	-730	multi-exon	FALSE	canonical	2	9	junction_4	5.10170008428563	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTATAACACAATGTGCTT	-1	True	NA	NA	False	AATATA	-8	NA	28813162	28966085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_28813481_28817444_28817510_28820998_28821669_28870556_28870713_28871660_28871997_28935703_28935829_28938595_28938780_28942585_28942695_28943322_28943379_28947527_28947654_28948597_28948784_28949328_28949391_28950358_28950569_28951262_28951413_28961288_28961483_28962409_28962566_28963888
ENSMUSG00000028289.13_4	chr4	+	4701	5	FSM	ENSMUSG00000028289.13	ENSMUST00000149030.8	3187	5	-194	-1320	1	1320	multi-exon	FALSE	canonical	2	9	junction_4	7.79021822544144	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGCAAAAAAAAAAAAAA	1	True	NA	NA	False	NA	NA	NA	28813131	28875121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_28813481_28817444_28817510_28820998_28821669_28870556_28870713_28871660
ENSMUSG00000028289.13_5	chr4	+	3574	17	NIC	ENSMUSG00000028289.13	novel	6746	17	NA	NA	9	-2443	combination_of_known_junctions	FALSE	canonical	2	3	junction_7	5.85768725692999	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAATATTTTCCTTAAA	-3	True	NA	NA	False	AATAAA	-25	NA	28813160	28964372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_28813481_28817444_28817510_28820998_28821669_28870556_28870713_28871660_28871997_28935703_28935829_28938595_28938765_28942585_28942695_28943322_28943379_28947527_28947654_28948597_28948784_28949328_28949391_28950358_28950569_28951262_28951413_28961288_28961483_28962409_28962566_28963888
ENSMUSG00000028289.13_6	chr4	+	3322	1	NIC	ENSMUSG00000028289.13	novel	2880	10	NA	NA	-437	924	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28871403	28874725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_28871400_28874700
ENSMUSG00000028289.13_7	chr4	+	406	1	ISM	ENSMUSG00000028289.13	ENSMUST00000029964.12	6746	17	150830	3133	92037	-2449	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCAATGAAATATTTTC	NA	False	NA	NA	False	AATAAA	-19	NA	28963960	28964366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_28964000_28964400
ENSMUSG00000028291.8_0	chr4	+	1714	5	FSM	ENSMUSG00000028291.8	ENSMUST00000084299.6	1397	5	-319	2	-319	-2	multi-exon	FALSE	canonical	3	720	junction_1	39.7138200126858	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGCCTGTTTCCGAAT	-7	True	NA	11	True	AATAAA	-12	NA	34550617	34566906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_34551274_34562311_34562456_34565127_34565278_34565933_34566006_34566214
ENSMUSG00000028291.8_1	chr4	+	1585	6	NNC	ENSMUSG00000028291.8	novel	1397	5	NA	NA	-321	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	311.730396336321	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGCCTGTTTCCGAATT	-9	True	NA	12	True	AATAAA	-13	NA	34550615	34566907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_34550778_34550909_34551274_34562311_34562456_34565127_34565278_34565933_34566006_34566214
ENSMUSG00000028292.15_0	chr4	+	1848	20	FSM	ENSMUSG00000028292.15	ENSMUST00000029968.14	1868	20	16	4	-1	0	multi-exon	TRUE	canonical	3	576	junction_1	51.5992441268264	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGTGTGTAGTAGTGTG	4	True	NA	8	True	AATAGA	-23	NA	34614972	34660163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ENSMUSG00000028292.15_4	chr4	+	1951	21	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_9	178.38710715744	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGTGTGTAGTAGTGTG	4	True	NA	8	True	AATAGA	-23	NA	34614972	34660163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34640873_34640977_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ENSMUSG00000028293.15_0	chr4	-	2007	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	29	3	-13	-3	multi-exon	FALSE	canonical	3	108	junction_4	17.6831523646385	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTTGTGCAGTTACTT	8	True	NA	-16	True	AATAAA	-11	NA	34687409	34663259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
ENSMUSG00000028293.15_2	chr4	-	2004	9	NIC	ENSMUSG00000028293.15	novel	2039	8	NA	NA	-66	-1	combination_of_known_junctions	FALSE	canonical	3	8	junction_8	55.3893886498127	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTGTGCAGTTACTTTG	6	True	NA	-14	True	AATAAA	-13	NA	34687321	34663257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34684048_34684132_34687243
ENSMUSG00000028293.15_4	chr4	-	1642	6	ISM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	11827	4	7758	-4	3prime_fragment	FALSE	canonical	3	108	junction_4	20.6300751331642	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTTTTGTGCAGTTACT	NA	False	NA	-17	True	AATAAA	-10	NA	34675611	34663260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471
ENSMUSG00000028293.15_7	chr4	-	2156	9	NIC	ENSMUSG00000028293.15	novel	2039	8	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	59.0750317393059	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTGTGCAGTTACTTTG	-19	True	NA	-14	True	AATAAA	-13	NA	34687436	34663257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34673808_34673929_34675029_34675183_34675471_34675632_34683284_34683463_34687243
ENSMUSG00000028293.15_8	chr4	-	504	1	ISM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	23674	4	19605	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTTTTGTGCAGTTACT	NA	False	NA	-17	True	AATAAA	-10	NA	34663764	34663260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_34663300_34663800
ENSMUSG00000028294.16_1	chr4	-	1706	11	FSM	ENSMUSG00000028294.16	ENSMUST00000108136.8	1688	11	-22	4	-5	-4	multi-exon	FALSE	canonical	2	4	junction_2	1.88679622641132	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTGTTTACTGTGTATT	-6	True	NA	NA	False	ATTAAA	-11	NA	34730200	34711335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_34711596_34714394_34714536_34716304_34716504_34719044_34719165_34719572_34719782_34721415_34721575_34722607_34722797_34724814_34724906_34727904_34727989_34728795_34728909_34730059
ENSMUSG00000028294.16_3	chr4	-	1697	11	NIC	ENSMUSG00000028294.16	novel	1688	11	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	2.61725046566048	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTTTACTGTGTATTTT	1	True	NA	NA	False	ATTAAA	-13	NA	34730193	34711333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_34711596_34714394_34714536_34716304_34716504_34719044_34719165_34719572_34719782_34721415_34721575_34722607_34722797_34724814_34724906_34727904_34727989_34728795_34728909_34730063
ENSMUSG00000028295.15_0	chr4	-	711	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	60	15	1	-4	multi-exon	FALSE	canonical	3	160	junction_2	5.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAATAAAACAAAGTGGT	-12	True	NA	NA	False	ATTAAA	-3	NA	34778363	34768678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_34769148_34771257_34771415_34778278
ENSMUSG00000028295.15_2	chr4	-	2181	3	FSM	ENSMUSG00000028295.15	ENSMUST00000108134.8	782	3	26	-1425	-1	1425	multi-exon	FALSE	canonical	3	19	junction_2	76	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGAAACTCAGCCCCAG	13	True	NA	NA	False	AATAAA	-10	NA	34778338	34767238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_34769148_34771257_34771415_34778223
ENSMUSG00000028300.15_1	chr4	-	3141	11	FSM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	52	0	6	0	multi-exon	FALSE	canonical	3	67	junction_8	10.8355895086516	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTTAGTTCATT	-5	True	NA	-5	True	AATAAA	-16	NA	35225828	35191286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35225787
ENSMUSG00000028300.15_11	chr4	-	3353	12	NIC	ENSMUSG00000028300.15	novel	3193	11	NA	NA	-4	-6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_11	34.5947017392801	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTGTGTATGTTTTAG	-15	True	NA	-11	True	AATAAA	-10	NA	35225838	35191292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35221880_35222089_35225787
ENSMUSG00000028300.15_5	chr4	-	3095	10	ISM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	6963	6	6917	-6	3prime_fragment	FALSE	canonical	3	67	junction_8	11.3474857170549	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTGTGTATGTTTTAG	6906	False	NA	-11	True	AATAAA	-10	NA	35218917	35191292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413
ENSMUSG00000028309.15_21	chr4	+	3630	18	ISM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	5910	3	-3742	-2	3prime_fragment	FALSE	canonical	3	48	junction_2	16.2859397613412	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTGTGTTTGTGGTGT	5839	False	NA	2	True	ATTAAA	-14	NA	49637975	49656884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
ENSMUSG00000028309.15_35	chr4	+	2226	8	ISM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	17972	1	-225	0	3prime_fragment	FALSE	canonical	3	79	junction_6	9.437225465665	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTGTTTGTGGTGTTC	NA	False	NA	4	True	ATTAAA	-16	NA	49650037	49656886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
ENSMUSG00000028309.15_5	chr4	+	4149	21	FSM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	2	3	2	-2	multi-exon	FALSE	canonical	3	46	junction_1	16.7996279720713	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTGTGTTTGTGGTGT	-11	True	NA	2	True	ATTAAA	-14	NA	49632067	49656884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
ENSMUSG00000028309.15_9	chr4	+	4291	20	FSM	ENSMUSG00000028309.15	ENSMUST00000167496.8	4312	20	20	1	-13	-1	multi-exon	FALSE	canonical	3	48	junction_4	16.450883834839	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGTGTTTGTGGTGTT	1	True	NA	3	True	ATTAAA	-15	NA	49632079	49656885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
ENSMUSG00000028312.20_0	chr4	+	5383	25	FSM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	17	4	-6	-4	multi-exon	FALSE	canonical	3	347	junction_1	46.9361083164006	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTTTTGTAGTACTACA	-2	True	NA	17	True	ATTAAA	-17	NA	52439259	52488256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
ENSMUSG00000028312.20_2	chr4	+	5310	25	FSM	ENSMUSG00000028312.20	ENSMUST00000117280.8	5328	25	15	3	6	-3	multi-exon	FALSE	canonical	3	100	junction_1	79.8595990195014	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTTGTAGTACTACAG	-4	True	NA	18	True	ATTAAA	-18	NA	52439257	52488257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_52439335_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
ENSMUSG00000028312.20_55	chr4	+	1145	1	ISM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	47869	4	47843	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTTTTGTAGTACTACA	NA	False	NA	17	True	ATTAAA	-17	NA	52487111	52488256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_52487100_52488300
ENSMUSG00000028318.15_1	chr4	+	1587	12	FSM	ENSMUSG00000028318.15	ENSMUST00000133157.8	2986	12	66	1333	-13	-1	multi-exon	FALSE	canonical	3	141	junction_4	16.5753974809925	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCATCTCCCTCCTTTCA	1	True	NA	13	True	ATTAAA	-18	NA	45018648	45032359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_45018793_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
ENSMUSG00000028322.12_0	chr4	-	1030	4	FSM	ENSMUSG00000028322.12	ENSMUST00000030003.10	1077	4	20	27	-5	-27	multi-exon	FALSE	canonical	3	481	junction_1	46.9065264352651	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATAATAAACTTTGTTGG	-2	True	NA	-28	True	TATAAA	-7	NA	45320609	45316639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_45317029_45317677_45317830_45319549_45319700_45320270
ENSMUSG00000028329.14_1	chr4	-	953	6	FSM	ENSMUSG00000028329.14	ENSMUST00000030013.12	955	6	1	1	1	-1	multi-exon	FALSE	canonical	3	75	junction_2	5.6	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGATGCAGTCTTCACAG	5	True	NA	-2	True	AATAAA	-17	NA	46196310	46175222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_46175416_46183117_46183236_46184287_46184454_46185590_46185697_46193049_46193158_46196048
ENSMUSG00000028329.14_4	chr4	-	1139	7	NIC	ENSMUSG00000028329.14	novel	955	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	36.783148315499	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGATGCAGTCTTCACAGA	12	True	NA	-1	True	AATAAA	-18	NA	46196303	46175221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_46175416_46180206_46180399_46183117_46183236_46184287_46184454_46185590_46185697_46193049_46193158_46196048
ENSMUSG00000028330.9_1	chr4	+	2887	23	FSM	ENSMUSG00000028330.9	ENSMUST00000030014.9	3010	23	120	3	120	-3	multi-exon	TRUE	canonical	3	296	junction_19	36.3529529761015	668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCTGGGAGTCATGGTT	-21	True	NA	18	True	AATAAA	-18	NA	46138732	46172400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
ENSMUSG00000028331.13_1	chr4	-	1450	5	FSM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	14	63	0	-63	multi-exon	FALSE	canonical	3	91	junction_4	13.5346776836392	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTACTTATATTCTTTTT	0	True	NA	NA	False	NA	NA	NA	46389423	46379926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_46380311_46382058_46382686_46386093_46386252_46387567_46387743_46389317
ENSMUSG00000028331.13_3	chr4	-	3069	4	ISM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	23	10	4	-10	intron_retention	FALSE	canonical	3	116	junction_1	3.77123616632825	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTCTCTGTCTG	9	True	NA	NA	False	ATTAAA	-17	NA	46389414	46379873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_46380311_46382058_46382686_46386093_46386252_46387567
ENSMUSG00000028331.13_4	chr4	-	95	1	NIC	ENSMUSG00000028331.13	novel	2127	6	NA	NA	9397	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTACTTATATTCTTTTT	9402	False	NA	NA	False	NA	NA	NA	46380021	46379926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_46379900_46380000
ENSMUSG00000028331.13_5	chr4	-	4321	3	ISM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	34	63	15	-63	intron_retention	FALSE	canonical	3	116	junction_1	4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTACTTATATTCTTTTT	20	True	NA	NA	False	NA	NA	NA	46389403	46379926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_46380311_46382058_46382686_46386093
ENSMUSG00000028331.13_6	chr4	-	615	2	ISM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	7150	61	7131	-61	3prime_fragment	FALSE	canonical	3	116	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTTATATTCTTTTTTA	7136	False	NA	NA	False	NA	NA	NA	46382287	46379924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_46380311_46382058
ENSMUSG00000028331.13_9	chr4	-	3128	6	NIC	ENSMUSG00000028331.13	novel	2127	6	NA	NA	1	998	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	47.0829056027769	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCGTGTCACCTGTGAA	6	True	NA	NA	False	GATAAA	-14	NA	46389417	46375506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_46377249_46379984_46380311_46382058_46382686_46386093_46386252_46387567_46387743_46389317
ENSMUSG00000028333.11_3	chr4	+	1524	7	FSM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	58	134	58	-134	multi-exon	FALSE	canonical	3	5377	junction_1	313.520688666988	5936	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTTTTCTCATGCTTT	6	True	NA	19	True	AATAAA	-15	NA	46450959	46472523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
ENSMUSG00000028334.11_0	chr4	+	1148	6	FSM	ENSMUSG00000028334.11	ENSMUST00000030018.5	2179	6	72	959	1	-959	multi-exon	FALSE	canonical	3	811	junction_3	76.1377698648969	624	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGCTGCTGCTGTCCAG	4	True	NA	11	True	AATAAA	-24	NA	46489319	46502673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
ENSMUSG00000028343.11_0	chr4	-	1500	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	-11	1135	-11	32	multi-exon	FALSE	canonical	3	625	junction_9	43.7020339182862	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGCATTGTCATTTAATA	9	True	NA	4	True	NA	NA	NA	48279569	48194457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
ENSMUSG00000028343.11_1	chr4	-	1474	11	NIC	ENSMUSG00000028343.11	novel	2624	12	NA	NA	-10	123	combination_of_known_splicesites	TRUE	canonical	3	16	junction_8	206.167019670945	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGTCCTGGACAGTCT	10	True	NA	-2	True	AATAAA	-24	NA	48279568	48194366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48241295_48241336_48243476_48243550_48279383
ENSMUSG00000028344.13_10	chr4	+	2121	1	Genic_Genomic	ENSMUSG00000028344.13	novel	NA	NA	NA	NA	48331	685	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48430518	48432639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_48430500_48432600
ENSMUSG00000028344.13_4	chr4	+	5561	17	FSM	ENSMUSG00000028344.13	ENSMUST00000030029.10	5633	17	65	7	41	-7	multi-exon	FALSE	canonical	1	2	junction_6	2.59506743650334	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATCATCCATCCCTGATG	-3	True	NA	5	True	AATAAA	-12	NA	48279866	48431947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_48279976_48283225_48283356_48307682_48307850_48382104_48382279_48385104_48385273_48389958_48390140_48392583_48392694_48396234_48396407_48397504_48397661_48398049_48398280_48402832_48402940_48407597_48407811_48415905_48416199_48421446_48422150_48425994_48426225_48427033_48427109_48429604
ENSMUSG00000028345.16_0	chr4	-	3057	15	FSM	ENSMUSG00000028345.16	ENSMUST00000030030.15	3102	15	39	6	2	-6	multi-exon	FALSE	canonical	3	662	junction_12	54.2776309771327	1366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTTCATGAGCTTCC	10	True	NA	-9	True	ATTAAA	-12	NA	48473420	48430863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473265
ENSMUSG00000028345.16_1	chr4	-	2583	15	NIC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	3	-6	combination_of_known_junctions	FALSE	canonical	3	43	junction_12	196.22390636355	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTTCATGAGCTTCC	11	True	NA	-9	True	ATTAAA	-12	NA	48473419	48430863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468753_48468994_48469883_48470073_48473265
ENSMUSG00000028347.15_1	chr4	+	2457	10	FSM	ENSMUSG00000028347.15	ENSMUST00000030032.13	2461	10	0	4	0	-4	multi-exon	FALSE	canonical	3	169	junction_4	114.355952842942	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACGGTCTGCTTTGTGTG	12	True	NA	NA	False	AATATA	-11	NA	48585173	48663127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617234_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
ENSMUSG00000028347.15_2	chr4	+	2480	10	FSM	ENSMUSG00000028347.15	ENSMUST00000130834.8	1426	10	-397	-657	-20	-4	multi-exon	FALSE	canonical	3	335	junction_4	69.1178989163971	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACGGTCTGCTTTGTGTG	-8	True	NA	NA	False	AATATA	-11	NA	48585153	48663127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617231_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
ENSMUSG00000028347.15_5	chr4	+	2475	10	NNC	ENSMUSG00000028347.15	novel	1426	10	NA	NA	-23	-6	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_7	136.341075574784	89	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATACGGTCTGCTTTGTG	-11	True	NA	NA	False	AATATA	-9	NA	48585150	48663125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617231_48617332_48636839_48636989_48638979_48639046_48650300_48650419_48658773_48658933_48662000
ENSMUSG00000028354.14_2	chr1	+	2310	1	NIC	ENSMUSG00000028354.14	novel	6442	18	NA	NA	3	-78415	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGTAATGTGTTATTTAT	NA	False	NA	NA	False	AATAAA	-10	NA	174329393	174331703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_174329400_174331700
ENSMUSG00000028354.14_3	chr1	+	6400	18	FSM	ENSMUSG00000028354.14	ENSMUST00000030039.13	6442	18	19	23	19	-23	multi-exon	FALSE	canonical	1	3	junction_6	3.5625891599357	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAATGAATAATAAA	NA	False	NA	-16	True	NA	NA	NA	174329409	174650272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_174331158_174364610_174364778_174409481_174409630_174420626_174420683_174435947_174437519_174440072_174440218_174474671_174474760_174494208_174494271_174521752_174521845_174521997_174522128_174523151_174523299_174526334_174526395_174527121_174527243_174547410_174547504_174571820_174571873_174618823_174618974_174647519_174647602_174648784
ENSMUSG00000028354.14_5	chr1	+	6237	16	NIC	ENSMUSG00000028354.14	novel	6442	18	NA	NA	-18	-19	combination_of_known_splicesites	TRUE	canonical	0	0	junction_2	4.37873649964614	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAATGAATAATAAAATAT	NA	False	NA	-12	True	NA	NA	NA	174329372	174650276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_174331158_174364610_174364778_174435947_174437519_174440072_174440218_174474671_174474760_174494208_174494271_174521752_174521845_174521997_174522128_174523151_174523299_174526334_174526395_174527121_174527243_174547410_174547504_174571820_174571873_174618823_174618974_174647519_174647602_174648784
ENSMUSG00000028354.14_6	chr1	+	3026	14	ISM	ENSMUSG00000028354.14	ENSMUST00000030039.13	6442	18	107812	23	-171	-23	3prime_fragment	FALSE	canonical	1	3	junction_2	4.02800844971878	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAATGAATAATAAA	NA	False	NA	-16	True	NA	NA	NA	174437202	174650272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_174437519_174440072_174440218_174474671_174474760_174494208_174494271_174521752_174521845_174521997_174522128_174523151_174523299_174526334_174526395_174527121_174527243_174547410_174547504_174571820_174571873_174618823_174618974_174647519_174647602_174648784
ENSMUSG00000028354.14_7	chr1	+	2532	12	ISM	ENSMUSG00000028354.14	ENSMUST00000030039.13	6442	18	145336	1	34612	-1	3prime_fragment	FALSE	canonical	1	3	junction_10	3.81601670214825	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTGTGTCAGCTGTGTG	NA	False	NA	6	True	AATAAA	-15	NA	174474726	174650294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_174474760_174494208_174494271_174521752_174521845_174521997_174522128_174523151_174523299_174526334_174526395_174527121_174527243_174547410_174547504_174571820_174571873_174618823_174618974_174647519_174647602_174648784
ENSMUSG00000028354.14_8	chr1	+	2119	8	ISM	ENSMUSG00000028354.14	ENSMUST00000030039.13	6442	18	193835	23	-18666	-23	3prime_fragment	FALSE	canonical	1	3	junction_6	4.32364170012044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAATGAATAATAAA	NA	False	NA	-16	True	NA	NA	NA	174523225	174650272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_174523299_174526334_174526395_174527121_174527243_174547410_174547504_174571820_174571873_174618823_174618974_174647519_174647602_174648784
ENSMUSG00000028367.6_0	chr4	-	547	5	FSM	ENSMUSG00000028367.6	ENSMUST00000030051.6	1051	5	116	388	116	-388	multi-exon	TRUE	canonical	3	4612	junction_4	90.890043459116	888	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGCCTGATGTGTTTT	-5	True	NA	-7	True	AATAAA	-21	NA	57956295	57943760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_57943968_57945146_57945213_57950838_57950899_57951796_57951902_57956186
ENSMUSG00000028378.7_0	chr4	-	1171	10	FSM	ENSMUSG00000028378.7	ENSMUST00000030069.7	2296	10	41	1084	41	-1084	multi-exon	FALSE	canonical	3	293	junction_9	57.656068390259	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCATCTGTGATAGAGAA	-1	True	NA	-11	True	AATAAA	-18	NA	58987078	58966522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
ENSMUSG00000028378.7_3	chr4	-	1131	9	ISM	ENSMUSG00000028378.7	ENSMUST00000030069.7	2296	10	2259	1084	2259	-1084	3prime_fragment	FALSE	canonical	3	295	junction_1	48.3063142870578	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCATCTGTGATAGAGAA	2264	False	NA	-11	True	AATAAA	-18	NA	58984860	58966522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743
ENSMUSG00000028381.9_0	chr4	+	3771	9	FSM	ENSMUSG00000028381.9	ENSMUST00000030074.8	4012	9	230	11	-71	-11	multi-exon	FALSE	canonical	3	208	junction_7	33.8664657146269	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACAATCAACGAGAGTAA	-11	True	NA	NA	False	AATAAA	-8	NA	59189486	59222822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_59189742_59207760_59207903_59211875_59211979_59213158_59213261_59213864_59213978_59217035_59217215_59218494_59218582_59219488_59219679_59220222
ENSMUSG00000028381.9_23	chr4	+	2186	1	ISM	ENSMUSG00000028381.9	ENSMUST00000030074.8	4012	9	31380	11	7981	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACAATCAACGAGAGTAA	6470	False	NA	NA	False	AATAAA	-8	NA	59220636	59222822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_59220600_59222800
ENSMUSG00000028382.16_0	chr4	-	3170	1	ISM	ENSMUSG00000028382.16	ENSMUST00000030076.12	6855	14	74303	24	10711	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	341	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGGCATCTGTACTCTC	1221	False	NA	-28	True	AATAAA	-2	NA	59475061	59471891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_59471900_59475100
ENSMUSG00000028382.16_1	chr4	-	6611	14	FSM	ENSMUSG00000028382.16	ENSMUST00000030076.12	6855	14	73	171	4	9	multi-exon	FALSE	canonical	3	119	junction_2	23.0463900573291	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGTAGTGCATGGTTA	-2	True	NA	-7	True	ATTAAA	-14	NA	59549291	59472038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524394_59524477_59549147
ENSMUSG00000028382.16_2	chr4	-	6804	15	FSM	ENSMUSG00000028382.16	ENSMUST00000174586.8	6640	15	4	-168	4	-12	multi-exon	FALSE	canonical	3	35	junction_14	45.4889535817124	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTCTCTTAAGGTTTTTC	-2	True	NA	-16	True	AATAAA	-14	NA	59549291	59471879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524394_59524477_59546148_59546183_59549147
ENSMUSG00000028382.16_5	chr4	-	6590	14	FSM	ENSMUSG00000028382.16	ENSMUST00000148331.9	2016	14	35	-4609	5	9	multi-exon	FALSE	canonical	3	25	junction_12	40.1538461538462	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGTAGTGCATGGTTA	10	True	NA	-7	True	ATTAAA	-14	NA	59549279	59472038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524403_59524477_59549147
ENSMUSG00000028383.18_2	chr4	+	2562	11	FSM	ENSMUSG00000028383.18	ENSMUST00000030078.12	2611	11	44	5	-38	-4	multi-exon	FALSE	canonical	3	72	junction_3	12.963024338479	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATTCTATGTGCCTTTT	12	False	NA	15	True	NA	NA	NA	59581606	59618684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862_59596967_59597256_59597356_59601372_59601568_59606471_59606544_59610509_59610876_59612681_59612811_59617634
ENSMUSG00000028385.15_0	chr4	+	7039	9	FSM	ENSMUSG00000028385.15	ENSMUST00000030080.7	7314	9	9	266	9	-266	multi-exon	FALSE	canonical	3	98	junction_2	10.264471491509	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAGGAAAAAAAAGGAA	-23	True	NA	NA	False	AAAAAG	-39	NA	59805848	59904471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_59806226_59857444_59857637_59868237_59868349_59879221_59879381_59884979_59885176_59886406_59886607_59892461_59892549_59894524_59894678_59898907
ENSMUSG00000028385.15_1	chr4	+	2306	8	ISM	ENSMUSG00000028385.15	ENSMUST00000030080.7	7314	9	10	9228	10	955	5prime_fragment	FALSE	canonical	3	98	junction_2	9.81876587282262	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGACCTCAGAGTTAGCAT	-22	True	NA	NA	False	TTTAAA	-10	NA	59805849	59895509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_59806226_59857444_59857637_59868237_59868349_59879221_59879381_59884979_59885176_59886406_59886607_59892461_59892549_59894524
ENSMUSG00000028385.15_8	chr4	+	3550	1	ISM	ENSMUSG00000028385.15	ENSMUST00000030080.7	7314	9	95339	9	16399	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTCCGGATCATGTGC	NA	False	NA	9	True	AATAAA	-18	NA	59901178	59904728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_59901200_59904700
ENSMUSG00000028389.13_0	chr4	-	3505	4	FSM	ENSMUSG00000028389.13	ENSMUST00000222050.2	2017	4	-46	-1442	-30	-7	multi-exon	FALSE	canonical	3	19	junction_3	8.48528137423857	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAGTGAAAGTGGTAT	NA	False	NA	NA	False	ATTAAA	-12	NA	62126713	62107783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62110927_62122755_62122888_62123260_62123343_62126565
ENSMUSG00000028389.13_1	chr4	-	3497	4	FSM	ENSMUSG00000028389.13	ENSMUST00000068822.4	3494	4	-7	4	-7	-4	multi-exon	FALSE	canonical	3	7	junction_3	14.142135623731	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTGAAAGTGGTATTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	62126690	62107780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62110927_62122755_62122888_62123260_62123346_62126556
ENSMUSG00000028389.13_10	chr4	-	3522	4	FSM	ENSMUSG00000028389.13	ENSMUST00000222748.2	2564	4	-37	-921	-37	-7	multi-exon	FALSE	canonical	2	4	junction_3	15.556349186104	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAGTGAAAGTGGTAT	NA	False	NA	NA	False	ATTAAA	-12	NA	62126476	62107783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62110927_62122755_62122888_62123260_62123346_62126314
ENSMUSG00000028389.13_2	chr4	-	3574	4	FSM	ENSMUSG00000028389.13	ENSMUST00000221329.2	1776	4	-181	-1617	-96	-7	multi-exon	FALSE	canonical	3	15	junction_3	10.3708994574027	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAGTGAAAGTGGTAT	NA	False	NA	NA	False	ATTAAA	-12	NA	62126779	62107783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62110927_62122755_62122888_62123260_62123346_62126565
ENSMUSG00000028389.13_3	chr4	-	2668	1	ISM	ENSMUSG00000028389.13	ENSMUST00000068822.4	3494	4	16234	5	15677	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGTGAAAGTGGTATTT	NA	False	NA	NA	False	ATTAAA	-14	NA	62110449	62107781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_62107800_62110400
ENSMUSG00000028389.13_4	chr4	-	3233	2	ISM	ENSMUSG00000028389.13	ENSMUST00000068822.4	3494	4	3838	7	3281	-7	3prime_fragment	FALSE	canonical	3	37	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAGTGAAAGTGGTAT	NA	False	NA	NA	False	ATTAAA	-12	NA	62122845	62107783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_62110927_62122755
ENSMUSG00000028389.13_6	chr4	-	3521	4	NIC	ENSMUSG00000028389.13	novel	3494	4	NA	NA	-35	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	17.4419672692682	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGTGAAAGTGGTATTT	NA	False	NA	NA	False	ATTAAA	-14	NA	62126718	62107781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_62110927_62122755_62122888_62123260_62123343_62126556
ENSMUSG00000028389.13_7	chr4	-	3502	4	NIC	ENSMUSG00000028389.13	novel	2564	4	NA	NA	-20	-7	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	16.9705627484771	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAGTGAAAGTGGTAT	NA	False	NA	NA	False	ATTAAA	-12	NA	62126459	62107783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_62110927_62122755_62122888_62123260_62123343_62126314
ENSMUSG00000028391.17_0	chr4	-	1336	11	FSM	ENSMUSG00000028391.17	ENSMUST00000107452.8	1437	11	1	100	1	-100	multi-exon	FALSE	canonical	3	12	junction_8	57	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	62389123	62371970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381711_62382163_62382307_62387073_62387171_62389055
ENSMUSG00000028391.17_1	chr4	-	1339	11	FSM	ENSMUSG00000028391.17	ENSMUST00000030087.14	1440	11	1	100	1	-100	multi-exon	FALSE	canonical	3	150	junction_2	19.4548194543152	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	62389123	62371970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
ENSMUSG00000028391.17_15	chr4	-	1425	11	NIC	ENSMUSG00000028391.17	novel	2549	11	NA	NA	1	-100	combination_of_known_junctions	FALSE	canonical	2	8	junction_10	58.0241329103676	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	62389123	62371970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62388969
ENSMUSG00000028391.17_3	chr4	-	1177	10	NIC	ENSMUSG00000028391.17	novel	1440	11	NA	NA	0	-100	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	61.169063430689	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	62389124	62371970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_62372175_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
ENSMUSG00000028391.17_6	chr4	-	1554	11	FSM	ENSMUSG00000028391.17	ENSMUST00000120095.8	2549	11	1	994	1	8	multi-exon	FALSE	canonical	3	20	junction_10	54.6457683631587	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAATCAGGGTATTTGT	NA	False	NA	NA	False	NA	NA	NA	62389123	62371862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62388948
ENSMUSG00000028392.16_1	chr4	+	2139	6	FSM	ENSMUSG00000028392.16	ENSMUST00000107449.4	2167	6	7	21	7	-21	multi-exon	FALSE	canonical	3	15	junction_5	4.63033476111609	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGTTTCTAAAGACTTGG	9563	False	NA	7	True	AATAAA	-18	NA	62398296	62415514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_62398675_62400854_62400954_62404649_62404881_62406422_62406449_62412969_62413095_62414234
ENSMUSG00000028392.16_2	chr4	+	1744	7	FSM	ENSMUSG00000028392.16	ENSMUST00000030088.12	1757	7	-11	24	-11	-24	multi-exon	FALSE	canonical	3	6	junction_6	6.83130051063973	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGGTTTCTAAAGACT	9545	False	NA	4	True	AATAAA	-15	NA	62398278	62415511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_62398675_62400854_62400954_62404649_62404881_62406422_62406449_62412969_62413095_62414234_62414809_62415218
ENSMUSG00000028393.11_0	chr4	-	1216	12	FSM	ENSMUSG00000028393.11	ENSMUST00000030090.4	1206	12	-10	0	-10	0	multi-exon	FALSE	canonical	3	554	junction_1	45.4718149012465	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438165	62427405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
ENSMUSG00000028393.11_13	chr4	-	1138	11	ISM	ENSMUSG00000028393.11	ENSMUST00000107444.8	1247	12	5642	1	5629	-1	3prime_fragment	FALSE	canonical	3	554	junction_1	47.6239435578365	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCTGTGCCCTCTTCCTG	2241	False	NA	-2	True	AGTAAA	-17	NA	62432489	62427406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310
ENSMUSG00000028394.10_1	chr4	-	1777	4	FSM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	21	7	-9	-7	multi-exon	FALSE	canonical	3	309	junction_3	9.56846672960488	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGATGACTCATACAAT	NA	False	NA	-6	True	AATAAA	-15	NA	62443284	62440892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62442348_62442554_62442674_62442986_62443073_62443167
ENSMUSG00000028394.10_3	chr4	-	1371	1	ISM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	1042	7	1012	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGATGACTCATACAAT	NA	False	NA	-6	True	AATAAA	-15	NA	62442263	62440892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_62440900_62442300
ENSMUSG00000028397.14_0	chr4	+	4189	22	FSM	ENSMUSG00000028397.14	ENSMUST00000030102.12	4196	22	8	-1	8	1	multi-exon	FALSE	canonical	0	0	junction_5	55.9303502727513	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTTCTGTCTGTCAA	NA	False	NA	15	True	ATTAAA	-16	NA	74170180	74324098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_74170324_74181045_74181207_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
ENSMUSG00000028397.14_1	chr4	+	4086	21	NIC	ENSMUSG00000028397.14	novel	4196	22	NA	NA	-4	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	72.8474433319386	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTTCTGTCTGTCAA	NA	False	NA	15	True	ATTAAA	-16	NA	74170168	74324098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_74170324_74181045_74181207_74189430_74189607_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
ENSMUSG00000028397.14_35	chr4	+	3572	18	ISM	ENSMUSG00000028397.14	ENSMUST00000030102.12	4196	22	46527	-1	35653	1	3prime_fragment	FALSE	canonical	0	0	junction_1	61.7634173535062	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTTCTGTCTGTCAA	NA	False	NA	15	True	ATTAAA	-16	NA	74216699	74324098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
ENSMUSG00000028398.9_0	chr4	-	720	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	14	7	14	-7	multi-exon	FALSE	canonical	3	402	junction_1	0	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAATAAGTAGTTCTTT	NA	False	NA	NA	False	AATAAA	-9	NA	75196528	75195597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_75196007_75196217
ENSMUSG00000028399.19_5	chr4	-	2575	1	ISM	ENSMUSG00000028399.19	ENSMUST00000107289.9	9899	36	506163	5	140640	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCAGTCCTGGGCTTTGTT	NA	False	NA	-6	True	AATAAA	-13	NA	75862054	75859479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_75859500_75862100
ENSMUSG00000028402.19_17	chr4	-	7398	46	NIC	ENSMUSG00000028402.19	novel	7512	47	NA	NA	-3	-8	combination_of_known_junctions	TRUE	canonical	1	2	junction_12	3.07679486912382	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACAAACAAGCAGATGCT	426	False	NA	NA	False	AATAAA	-17	NA	81361055	81196749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_81198007_81199937_81200062_81200893_81201007_81201569_81201675_81202813_81202937_81203699_81203744_81204604_81204696_81205896_81205984_81208467_81208616_81210655_81210850_81210997_81211082_81211716_81211863_81213655_81213822_81215523_81215599_81215698_81215792_81221829_81221911_81225036_81225128_81225334_81225427_81226466_81226664_81228393_81228557_81231736_81231836_81235830_81235942_81238582_81238761_81245101_81245195_81247663_81247769_81253912_81254112_81266866_81266982_81267238_81267515_81274566_81274735_81278240_81278451_81279552_81279739_81281262_81281428_81282230_81282378_81284145_81284253_81286922_81286995_81287801_81287965_81296200_81296290_81296593_81296709_81299907_81300118_81301544_81301674_81301995_81302210_81303400_81303541_81304502_81304716_81337108_81337276_81339409_81339480_81360872
ENSMUSG00000028403.16_0	chr4	-	3882	1	ISM	ENSMUSG00000028403.16	ENSMUST00000030110.15	8763	9	57045	9	48186	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACATAGGAATGTTTTT	NA	False	NA	-19	True	AATAAA	-9	NA	82720865	82716983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_82717000_82720900
ENSMUSG00000028403.16_12	chr4	-	3283	8	NIC	ENSMUSG00000028403.16	novel	8763	9	NA	NA	26	-28	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	32.3141467724688	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGAATGTGTTATTGTT	NA	False	NA	NA	False	TATAAA	-24	NA	82777884	82722311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_82724699_82725249_82725294_82753682_82753822_82756512_82756625_82762340_82762440_82765779_82765977_82772205_82772353_82777726
ENSMUSG00000028403.16_5	chr4	-	3418	9	FSM	ENSMUSG00000028403.16	ENSMUST00000030110.15	8763	9	45	5300	45	9	multi-exon	FALSE	canonical	3	62	junction_1	13.8293166859393	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAACTGCCTGGCTTCATG	NA	False	NA	NA	False	TATAAA	-43	NA	82777865	82722274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_82724699_82725249_82725294_82738566_82738684_82753682_82753822_82756512_82756625_82762340_82762440_82765779_82765977_82772205_82772353_82777726
ENSMUSG00000028405.10_0	chr4	+	3474	21	FSM	ENSMUSG00000028405.10	ENSMUST00000102973.4	3832	21	351	7	351	-7	multi-exon	TRUE	canonical	3	234	junction_5	35.2306684580353	710	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACGTGTTGGCTTTG	25	True	NA	2	True	ATTAAA	-10	NA	40143431	40198331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40197553
ENSMUSG00000028407.5_0	chr4	+	320	2	FSM	ENSMUSG00000028407.5	ENSMUST00000129758.3	1044	2	5	719	5	-5	multi-exon	FALSE	canonical	3	97	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCGTGTGGCCTTTT	4	True	NA	2	True	AGTAAA	-12	NA	40269583	40270221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_40269720_40270037
ENSMUSG00000028409.12_0	chr4	-	1776	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	66	576	26	-576	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	1310	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAAGTGCTCATAAGGG	-1	True	NA	-15	True	AATAAA	-16	NA	40757857	40737117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
ENSMUSG00000028410.14_0	chr4	+	1464	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	54	1858	-25	-794	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	2030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	-3	True	NA	12	True	AATAAA	-18	NA	40722533	40733106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028410.14_20	chr4	+	1438	9	NIC	ENSMUSG00000028410.14	novel	5622	9	NA	NA	-2	-794	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	944.437919809979	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	-29	True	NA	12	True	AATAAA	-18	NA	40722927	40733106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_40723002_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028410.14_22	chr4	+	1572	9	FSM	ENSMUSG00000028410.14	ENSMUST00000164233.8	5622	9	7	4043	-1	-794	multi-exon	FALSE	canonical	3	76	junction_1	940.162278213182	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	-28	True	NA	12	True	AATAAA	-18	NA	40722928	40733106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028411.16_1	chr4	-	1366	8	FSM	ENSMUSG00000028411.16	ENSMUST00000030119.10	5250	8	18	3866	11	-6	multi-exon	FALSE	canonical	3	144	junction_6	8.59757915618919	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCGTTCCTGGATTGTG	-6	True	NA	-14	True	AATATA	-11	NA	40703176	40686247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695424_40697216_40697354_40703136
ENSMUSG00000028411.16_12	chr4	-	1334	7	ISM	ENSMUSG00000028411.16	ENSMUST00000068125.11	5383	8	5559	3860	-2848	0	3prime_fragment	FALSE	canonical	3	144	junction_6	9.14087280053472	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGGATTGTGTAGTAT	-4	True	NA	-8	True	AATATA	-17	NA	40697355	40686241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695424_40697216
ENSMUSG00000028411.16_5	chr4	-	940	5	ISM	ENSMUSG00000028411.16	ENSMUST00000129021.9	1378	8	8257	2	-423	-2	3prime_fragment	FALSE	canonical	3	146	junction_3	6.86931583201704	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTTCCTGGATTGTGTAGT	8278	False	NA	-10	True	AATATA	-15	NA	40694930	40686243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851
ENSMUSG00000028411.16_9	chr4	-	1368	8	FSM	ENSMUSG00000028411.16	ENSMUST00000129021.9	1378	8	8	2	8	-2	multi-exon	FALSE	canonical	3	41	junction_6	41.4453168128111	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTTCCTGGATTGTGTAGT	-9	True	NA	-10	True	AATATA	-15	NA	40703179	40686243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695419_40697216_40697354_40703136
ENSMUSG00000028412.18_0	chr4	+	4591	16	FSM	ENSMUSG00000028412.18	ENSMUST00000107651.9	4382	16	-232	23	26	-23	multi-exon	FALSE	canonical	3	334	junction_12	25.9286199658473	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAACTTTGTGTTTAGAAA	-7	True	NA	10	True	AATAAA	-10	NA	53440438	53567795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_53440717_53481463_53481554_53491387_53491531_53517544_53517682_53528654_53528749_53536322_53536493_53538389_53538480_53541300_53541441_53542364_53542552_53543541_53543708_53544540_53544698_53545684_53545769_53553485_53553624_53560914_53561152_53563140_53563222_53565396
ENSMUSG00000028412.18_45	chr4	+	1709	1	ISM	ENSMUSG00000028412.18	ENSMUST00000107651.9	4382	16	125419	20	-30015	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTGTGTTTAGAAATTA	NA	False	NA	13	True	AATAAA	-13	NA	53566089	53567798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_53566100_53567800
ENSMUSG00000028413.14_0	chr4	-	3933	6	FSM	ENSMUSG00000028413.14	ENSMUST00000030121.13	3983	6	47	3	47	-3	multi-exon	FALSE	canonical	3	127	junction_2	16.0872620417522	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGGCTTCTTTTCTTTT	27	True	NA	-4	True	AATAAA	-15	NA	40853958	40804604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_40807318_40807732_40807838_40809678_40809802_40812684_40812873_40823438_40823675_40853390
ENSMUSG00000028413.14_3	chr4	-	1699	1	ISM	ENSMUSG00000028413.14	ENSMUST00000030121.13	3983	6	47702	3	47702	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGGCTTCTTTTCTTTT	269	False	NA	-4	True	AATAAA	-15	NA	40806303	40804604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_40804600_40806300
ENSMUSG00000028414.18_0	chr4	+	5903	10	FSM	ENSMUSG00000028414.18	ENSMUST00000128667.8	6080	10	174	3	9	-3	multi-exon	FALSE	canonical	3	30	junction_1	6.81501610008696	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTTTGTGTTTGTTTT	1	True	NA	2	True	AATAAA	-15	NA	53714171	53765782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_53714196_53720006_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
ENSMUSG00000028414.18_14	chr4	+	5459	7	ISM	ENSMUSG00000028414.18	ENSMUST00000061771.9	3370	9	11284	-2511	11284	-3	3prime_fragment	FALSE	canonical	3	37	junction_2	4.30761599444003	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTTTGTGTTTGTTTT	NA	False	NA	2	True	AATAAA	-15	NA	53731288	53765782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
ENSMUSG00000028414.18_15	chr4	+	5238	6	ISM	ENSMUSG00000028414.18	ENSMUST00000061771.9	3370	9	15012	-2504	15012	-10	3prime_fragment	FALSE	canonical	3	37	junction_1	4.70744091837593	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTCTTGCTCTTTTGTGT	NA	False	NA	-5	True	AATAAA	-8	NA	53735016	53765775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
ENSMUSG00000028414.18_16	chr4	+	4969	4	ISM	ENSMUSG00000028414.18	ENSMUST00000061771.9	3370	9	24647	-2512	24647	-2	3prime_fragment	FALSE	canonical	3	45	junction_2	2.16024689946929	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTTTGTGTTTGTTTTT	NA	False	NA	3	True	AATAAA	-16	NA	53744651	53765783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_53744749_53747008_53747143_53748368_53748497_53761173
ENSMUSG00000028414.18_19	chr4	+	2283	1	ISM	ENSMUSG00000028414.18	ENSMUST00000128667.8	6080	10	49502	3	43495	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTTTGTGTTTGTTTT	NA	False	NA	2	True	AATAAA	-15	NA	53763499	53765782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_53763500_53765800
ENSMUSG00000028414.18_3	chr4	+	6040	11	ISM	ENSMUSG00000028414.18	ENSMUST00000222290.2	3123	12	9	12109	9	-4	5prime_fragment	FALSE	canonical	2	9	junction_2	14.4377976159801	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTCTTTTGTGTTTGTTT	1	True	NA	1	True	AATAAA	-14	NA	53714171	53765781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_53714196_53720006_53720210_53724604_53724743_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
ENSMUSG00000028414.18_7	chr4	+	6230	10	FSM	ENSMUSG00000028414.18	ENSMUST00000221657.2	6241	10	8	3	8	-3	multi-exon	FALSE	canonical	1	1	junction_1	14.3819159423506	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTTTGTGTTTGTTTT	25	True	NA	2	True	AATAAA	-15	NA	53714195	53765782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_53714547_53720006_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
ENSMUSG00000028414.18_9	chr4	+	5881	9	FSM	ENSMUSG00000028414.18	ENSMUST00000061771.9	3370	9	0	-2511	0	-3	multi-exon	FALSE	canonical	3	33	junction_1	5.65685424949238	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTTTGTGTTTGTTTT	5834	False	NA	2	True	AATAAA	-15	NA	53720004	53765782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
ENSMUSG00000028416.14_0	chr4	-	1299	7	FSM	ENSMUSG00000028416.14	ENSMUST00000108089.8	1336	7	14	23	14	-20	multi-exon	FALSE	canonical	3	1821	junction_3	173.811599791907	1196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTAGACTTGTGTTTTC	-21	True	NA	-29	True	AAAAAG	-17	NA	40948267	40936420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721
ENSMUSG00000028419.6_0	chr4	+	1364	8	FSM	ENSMUSG00000028419.6	ENSMUST00000030128.6	1519	8	148	7	148	-7	multi-exon	FALSE	canonical	3	499	junction_1	44.0352363547231	355	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGATGTAATTGTAGTA	-8	True	NA	7	True	AATAAA	-9	NA	40948554	40965296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_40948677_40949453_40949559_40950513_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
ENSMUSG00000028420.14_0	chr4	+	1429	6	FSM	ENSMUSG00000028420.14	ENSMUST00000030127.13	2862	6	5	1428	5	-1428	multi-exon	FALSE	canonical	3	107	junction_3	9.52050418832952	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGTGTATACAGTTATT	-11	True	NA	4	True	AATAAA	-13	NA	53826049	53860591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_53826221_53840626_53840784_53848865_53849051_53850473_53850562_53854311_53854430_53859881
ENSMUSG00000028420.14_2	chr4	+	2687	5	NIC	ENSMUSG00000028420.14	novel	2862	6	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	42.4345083628879	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATGCAAGGGGTATTCTT	-2	True	NA	NA	False	ATTAAA	-27	NA	53826058	53862015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_53826221_53848865_53849051_53850473_53850562_53854311_53854430_53859881
ENSMUSG00000028420.14_3	chr4	+	1087	4	NIC	ENSMUSG00000028420.14	novel	2862	6	NA	NA	-5	-1438	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	56.8643610318058	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGTGTACATTTGGTGTA	-21	True	NA	-6	True	AATAAA	-3	NA	53826039	53860581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_53826221_53850473_53850562_53854311_53854430_53859881
ENSMUSG00000028423.16_1	chr4	+	3012	16	FSM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	73	1264	73	-1	multi-exon	FALSE	canonical	3	463	junction_8	92.9020033272815	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTCTTCTTGTCAGGCT	-13	True	NA	15	True	NA	NA	NA	40970978	41012607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
ENSMUSG00000028423.16_2	chr4	+	3543	16	FSM	ENSMUSG00000028423.16	ENSMUST00000091614.7	3617	16	73	1	73	-1	multi-exon	FALSE	canonical	3	26	junction_15	162.820473733086	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTCTTCTTGTCAGGCT	-13	True	NA	15	True	NA	NA	NA	40970978	41012607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41011526
ENSMUSG00000028423.16_3	chr4	+	4492	24	FSM	ENSMUSG00000028423.16	ENSMUST00000098143.11	4594	24	72	30	72	-30	multi-exon	FALSE	canonical	3	177	junction_17	193.960434840598	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATCATTAAACAAGGCAC	-14	True	NA	4	True	AATAAA	-21	NA	40970977	41025963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41015202_41015434_41016076_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023613_41023760_41024473_41024579_41024800
ENSMUSG00000028426.11_1	chr4	+	2329	10	FSM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	18	1463	9	-1463	multi-exon	FALSE	canonical	3	1075	junction_8	117.532764016184	1910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTGATGTATCCCTTT	0	True	NA	34	True	AGTAAA	-26	NA	55350060	55390774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_55350428_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385602_55389883
ENSMUSG00000028426.11_38	chr4	+	1078	1	ISM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	40085	1032	40038	-1032	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACAGTGTTGGCTTTTA	NA	False	NA	30	True	ATTAAA	-12	NA	55390127	55391205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_55390100_55391200
ENSMUSG00000028430.15_0	chr4	-	4419	26	FSM	ENSMUSG00000028430.15	ENSMUST00000030138.9	4599	26	178	2	178	-2	multi-exon	FALSE	canonical	3	287	junction_9	34.7585960591046	818	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGACTTGTCTTTCCTC	27	False	41124289	-6	True	NA	NA	NA	41124277	41114428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
ENSMUSG00000028431.12_1	chr4	-	4785	37	FSM	ENSMUSG00000028431.12	ENSMUST00000030140.3	6160	37	44	1331	44	1	multi-exon	TRUE	canonical	3	245	junction_24	36.3764927995411	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTGACTCAGTGGTAAA	6	True	NA	-17	True	AATAAA	-19	NA	56802287	56751010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_56751720_56755303_56755380_56757116_56757272_56758212_56758341_56758963_56759076_56759800_56759915_56762248_56762310_56762840_56762904_56767814_56767877_56769013_56769216_56770980_56771079_56771432_56771557_56772380_56772530_56773015_56773102_56773198_56773337_56774521_56774602_56774687_56774767_56775016_56775091_56775424_56775541_56776689_56776796_56776884_56776939_56778958_56779063_56779656_56779764_56781025_56781218_56784537_56784638_56786587_56786753_56787740_56787972_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
ENSMUSG00000028431.12_2	chr4	-	4671	36	NIC	ENSMUSG00000028431.12	novel	6160	37	NA	NA	44	1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_5	63.153586677275	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTGACTCAGTGGTAAA	6	True	NA	-17	True	AATAAA	-19	NA	56802287	56751010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_56751720_56755303_56755380_56757116_56757272_56758212_56758341_56758963_56759076_56762248_56762310_56762840_56762904_56767814_56767877_56769013_56769216_56770980_56771079_56771432_56771557_56772380_56772530_56773015_56773102_56773198_56773337_56774521_56774602_56774687_56774767_56775016_56775091_56775424_56775541_56776689_56776796_56776884_56776939_56778958_56779063_56779656_56779764_56781025_56781218_56784537_56784638_56786587_56786753_56787740_56787972_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
ENSMUSG00000028433.15_0	chr4	-	4330	29	FSM	ENSMUSG00000028433.15	ENSMUST00000030143.13	4368	29	35	3	16	-3	multi-exon	TRUE	canonical	3	748	junction_17	84.4073804080362	1556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATTCTTGGTCTCCGTGT	4	True	NA	-9	True	AATAAA	-9	NA	41275100	41194318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
ENSMUSG00000028433.15_5	chr4	-	4312	29	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_12	158.993144987642	242	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATTCTTGGTCTCCGTGT	4	True	NA	-9	True	AATAAA	-9	NA	41275100	41194318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202440_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
ENSMUSG00000028434.13_20	chr4	-	3463	16	FSM	ENSMUSG00000028434.13	ENSMUST00000030142.4	3247	16	-229	13	-229	-13	multi-exon	FALSE	canonical	3	116	junction_1	13.208414826247	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTACTGCTAACAGTTTT	86	False	NA	-13	True	AATAAA	-19	NA	57143666	57061738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_57063280_57064798_57064864_57068304_57068339_57071051_57071083_57073261_57073372_57076290_57076461_57076533_57076604_57076913_57077003_57077163_57077252_57078874_57078996_57084022_57084076_57085995_57086041_57087985_57088065_57088801_57088845_57103423_57103529_57142847
ENSMUSG00000028434.13_3	chr4	-	4247	25	NIC	ENSMUSG00000028434.13	novel	6746	26	NA	NA	-233	1091	combination_of_known_splicesites	TRUE	canonical	3	20	junction_2	61.2422188935052	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATCCTTCTCTTGGAT	82	False	NA	NA	False	NA	NA	NA	57143670	56994586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_56995804_56999581_56999728_57007905_57007978_57016853_57016932_57019771_57019959_57024337_57024437_57027608_57027677_57032114_57032241_57038502_57038622_57040843_57041053_57064798_57064864_57068304_57068339_57071051_57071083_57073261_57073372_57076290_57076461_57076533_57076604_57076913_57077003_57077163_57077252_57078874_57078996_57084022_57084076_57085995_57086041_57087985_57088065_57088801_57088845_57103423_57103529_57142847
ENSMUSG00000028435.9_0	chr4	-	1757	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	3	5	3	-5	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	2281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTTCTTTTTGTGTGT	2	True	NA	-9	True	AATAAA	-16	NA	41098180	41092726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
ENSMUSG00000028435.9_1	chr4	-	680	1	ISM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	4779	3	1044	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTCTTTTTGTGTGTGT	4778	False	NA	-7	True	AATAAA	-18	NA	41093404	41092724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_41092700_41093400
ENSMUSG00000028436.9_0	chr4	-	3375	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	62	5	62	-5	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	1102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGCTGTTTGAGTGACT	9	True	NA	-5	True	AATAAA	-13	NA	41314827	41291304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
ENSMUSG00000028437.15_0	chr4	+	2646	7	FSM	ENSMUSG00000028437.15	ENSMUST00000072866.12	3456	7	43	767	-9	-8	multi-exon	FALSE	canonical	3	286	junction_5	24.6981780704569	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGTATGCCATGCTGCC	-8	True	NA	-3	True	AATAAA	-6	NA	41349038	41389758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41387174_41387358_41388095_41388198_41388680
ENSMUSG00000028437.15_12	chr4	+	1912	4	ISM	ENSMUSG00000028437.15	ENSMUST00000072866.12	3456	7	30318	775	7589	-16	3prime_fragment	FALSE	canonical	3	286	junction_2	28.5462587546755	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCTAAAAGGTATGCC	6994	False	NA	-11	True	NA	NA	NA	41379313	41389750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_41379871_41387174_41387358_41388095_41388198_41388680
ENSMUSG00000028438.17_0	chr4	-	6852	14	NIC	ENSMUSG00000028438.17	novel	5593	13	NA	NA	-18	1088	combination_of_known_junctions	FALSE	canonical	3	20	junction_12	9.0651814539423	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACATAATACAAACAAACCA	-12	True	NA	NA	False	NA	NA	NA	41464866	41389656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_41392253_41392877_41392972_41393437_41395664_41397546_41397657_41400436_41400509_41403789_41403896_41404676_41404799_41409731_41409820_41413828_41414045_41414901_41415000_41423451_41423636_41428344_41428983_41429266_41429412_41464709
ENSMUSG00000028438.17_1	chr4	-	3719	3	ISM	ENSMUSG00000028438.17	ENSMUST00000108055.9	5593	13	70262	-976	10208	976	3prime_fragment	FALSE	canonical	3	32	junction_1	1	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACCTTTTAGATTTTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	41394578	41389768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_41392253_41392877_41392972_41393437
ENSMUSG00000028438.17_16	chr4	-	2000	2	FSM	ENSMUSG00000028438.17	ENSMUST00000131532.2	1151	2	32	-881	-7	881	multi-exon	FALSE	canonical	3	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACGTCAGTTGCTTTTC	-1	True	NA	NA	False	AGTAAA	-15	NA	41464855	41453508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41455363_41464709
ENSMUSG00000028438.17_20	chr4	-	5417	8	ISM	ENSMUSG00000028438.17	ENSMUST00000108055.9	5593	13	55053	-1123	-9	1123	3prime_fragment	FALSE	canonical	3	30	junction_3	5.5805785670356	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCTAGGTGTTATTCATT	NA	False	NA	NA	False	AATACA	-25	NA	41409787	41389621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_41392253_41392877_41392972_41393437_41395664_41397546_41397657_41400436_41400509_41403789_41403896_41404676_41404799_41409731
ENSMUSG00000028438.17_3	chr4	-	6707	13	FSM	ENSMUSG00000028438.17	ENSMUST00000108055.9	5593	13	-23	-1091	-15	1091	multi-exon	TRUE	canonical	3	24	junction_12	8.49632273398321	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAATACAAACAAACCAAAG	-9	True	NA	NA	False	NA	NA	NA	41464863	41389653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41392253_41392877_41392972_41393437_41395664_41397546_41397657_41400436_41400509_41403789_41403896_41404676_41404799_41409731_41409820_41413828_41414045_41414901_41415000_41423451_41423636_41428344_41428983_41464709
ENSMUSG00000028439.15_0	chr4	-	3349	6	NIC	ENSMUSG00000028439.15	novel	3357	6	NA	NA	-7	-13	intron_retention	FALSE	canonical	0	0	junction_3	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAACAAGCCAGACTCGG	-19	True	NA	NA	False	ATTAAA	-4	NA	41569545	41517703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_41520396_41520911_41520967_41521611_41521693_41521866_41521970_41524365_41524415_41569176
ENSMUSG00000028439.15_3	chr4	-	2096	6	FSM	ENSMUSG00000028439.15	ENSMUST00000108052.10	3357	6	5	1256	5	-1256	multi-exon	FALSE	canonical	0	0	junction_3	1.49666295470958	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCGACAGAGTCTTTTCAT	-6	True	NA	NA	False	NA	NA	NA	41569532	41518946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41520399_41520911_41520967_41521611_41521693_41521866_41521970_41524365_41524415_41569176
ENSMUSG00000028443.7_0	chr4	+	833	3	FSM	ENSMUSG00000028443.7	ENSMUST00000030154.7	845	3	-2	14	-2	-14	multi-exon	FALSE	canonical	3	137	junction_1	26.5	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCCCTTTCAACCTGTG	2	True	NA	18	True	AATAAA	-14	NA	41465148	41480912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_41465181_41477513_41477648_41480245
ENSMUSG00000028445.8_0	chr4	-	1236	2	FSM	ENSMUSG00000028445.8	ENSMUST00000127306.2	1269	2	-36	69	-36	-69	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCGAGATTTCTTTTTTTA	-2	True	NA	-70	True	AATAAA	-16	NA	41640360	41638212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41639002_41639913
ENSMUSG00000028447.12_0	chr4	-	810	7	FSM	ENSMUSG00000028447.12	ENSMUST00000030158.11	973	7	10	153	3	-153	multi-exon	FALSE	canonical	3	869	junction_5	34.1829229619443	303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGAGCCTGTTGGCCTG	-6	True	NA	NA	False	AATAAA	-14	NA	41723160	41714950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
ENSMUSG00000028452.8_0	chr4	-	2887	17	FSM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	73	356	-1	-356	multi-exon	FALSE	canonical	2	1390	junction_12	381.614124271823	2716	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTGAAGAGTGAATTACCA	1	True	NA	-5	True	AATAAA	-18	NA	43000434	42980318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
ENSMUSG00000028453.11_1	chr4	-	2667	14	FSM	ENSMUSG00000028453.11	ENSMUST00000030165.5	2771	14	103	1	-30	-1	multi-exon	FALSE	canonical	3	78	junction_11	17.9578731229673	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAGTTGTATGTGTGT	-4	True	NA	-7	True	ATTAAA	-15	NA	43010252	43002343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001
ENSMUSG00000028453.11_2	chr4	-	2901	13	NIC	ENSMUSG00000028453.11	novel	2771	14	NA	NA	-30	-1	intron_retention	FALSE	canonical	3	92	junction_5	14.74482018277	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAGTTGTATGTGTGT	-4	True	NA	-7	True	ATTAAA	-15	NA	43010252	43002343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43009280_43009706_43009801_43010001
ENSMUSG00000028453.11_4	chr4	-	2858	15	NIC	ENSMUSG00000028453.11	novel	2974	14	NA	NA	-20	-1	combination_of_known_junctions	FALSE	canonical	3	29	junction_14	28.3574127371109	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAGTTGTATGTGTGT	-8	True	NA	-7	True	ATTAAA	-15	NA	43010526	43002343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001_43010173_43010255
ENSMUSG00000028454.17_1	chr4	-	3575	11	NIC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	19	-3	intron_retention	FALSE	canonical	3	84	junction_10	34.3634980757198	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTAGCTAAGATCTGTG	12	True	NA	-10	True	AATAAA	-18	NA	43025800	43017637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025779
ENSMUSG00000028454.17_10	chr4	-	3503	11	FSM	ENSMUSG00000028454.17	ENSMUST00000067481.6	3525	11	19	3	19	-3	multi-exon	FALSE	canonical	3	19	junction_4	53.2560794651653	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTAGCTAAGATCTGTG	12	True	NA	-10	True	AATAAA	-18	NA	43025800	43017637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019782_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025779
ENSMUSG00000028454.17_2	chr4	-	3557	10	FSM	ENSMUSG00000028454.17	ENSMUST00000098109.9	4239	10	678	4	2	-4	multi-exon	FALSE	canonical	3	131	junction_4	26.4280995238864	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTAGCTAAGATCTGT	6353	False	NA	-11	True	AATAAA	-17	NA	43025078	43017638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562
ENSMUSG00000028454.17_5	chr4	-	4047	11	NIC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	-23	-4	intron_retention	FALSE	canonical	3	30	junction_10	46.9541265492182	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTAGCTAAGATCTGT	-3	True	NA	-11	True	AATAAA	-17	NA	43025779	43017638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025285
ENSMUSG00000028454.17_6	chr4	-	1579	5	ISM	ENSMUSG00000028454.17	ENSMUST00000149333.8	2312	11	4138	3	-1236	-3	3prime_fragment	FALSE	canonical	3	131	junction_4	29.1322415890024	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTAGCTAAGATCTGTG	9500	False	NA	-10	True	AATAAA	-18	NA	43020942	43017637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266
ENSMUSG00000028455.16_2	chr4	-	1231	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	309	334	-31	2	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	1986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACTGTCCTCATTGATT	1	True	NA	-5	True	AATAAA	-18	NA	43031401	43028023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
ENSMUSG00000028455.16_5	chr4	-	1209	9	ISM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	551	334	199	2	3prime_fragment	FALSE	canonical	3	2647	junction_5	244.637870126438	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACTGTCCTCATTGATT	9140	False	NA	-5	True	AATAAA	-18	NA	43031159	43028023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970
ENSMUSG00000028456.19_0	chr4	+	6355	39	NIC	ENSMUSG00000028456.19	novel	5034	40	NA	NA	6	-6	combination_of_known_junctions	TRUE	canonical	3	7	junction_23	6.06086396664375	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCAGCTTTTGGAGTCTG	8	True	NA	6	True	AATAAA	-8	NA	43058958	43264865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_43059286_43087902_43087933_43091227_43091328_43095745_43095864_43096898_43097023_43101800_43101875_43115102_43115161_43165743_43165979_43180327_43180643_43182768_43182860_43230117_43230165_43232529_43232609_43234665_43234741_43235181_43235402_43236919_43237148_43237696_43237839_43239296_43239467_43239845_43239962_43240224_43240389_43241006_43241158_43243234_43243304_43244701_43244792_43245467_43245597_43249459_43249582_43250216_43250303_43255474_43255602_43255820_43255918_43256128_43256273_43256775_43256854_43257275_43257354_43257846_43257936_43258149_43258303_43258420_43258545_43258650_43258708_43258868_43258950_43259461_43259610_43261681_43261775_43262976_43263137_43263299
ENSMUSG00000028456.19_10	chr4	+	3552	8	FSM	ENSMUSG00000028456.19	ENSMUST00000171234.2	3617	8	-16	81	-1	-81	multi-exon	FALSE	canonical	3	22	junction_5	2.99659670905758	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTATGCTTGGGTTGTT	17	False	NA	NA	False	AATAAA	-16	NA	43058967	43168473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43059286_43087902_43087933_43091227_43091328_43095745_43095864_43096898_43097023_43101800_43101875_43115102_43115161_43165743
ENSMUSG00000028456.19_5	chr4	+	6360	39	FSM	ENSMUSG00000028456.19	ENSMUST00000079978.13	6354	39	-10	4	6	-4	multi-exon	FALSE	canonical	3	15	junction_23	5.54732847284128	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTTTTGGAGTCTGGA	8	True	NA	8	True	AATAAA	-10	NA	43058958	43264867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43059286_43087902_43087933_43091227_43091328_43095745_43095864_43096898_43097023_43101800_43101875_43115102_43115161_43165743_43165979_43180327_43180643_43182768_43182860_43230117_43230165_43232529_43232609_43234665_43234741_43235181_43235402_43236919_43237148_43237696_43237839_43239296_43239467_43239845_43239962_43240224_43240389_43241006_43241158_43243234_43243304_43244701_43244792_43245467_43245597_43249456_43249582_43250216_43250303_43255474_43255602_43255820_43255918_43256128_43256273_43256775_43256854_43257275_43257354_43257846_43257936_43258149_43258303_43258420_43258545_43258650_43258708_43258868_43258950_43259461_43259610_43261681_43261775_43262976_43263137_43263299
ENSMUSG00000028456.19_53	chr4	+	2101	2	ISM	ENSMUSG00000028456.19	ENSMUST00000207708.2	6574	33	53104	-1132	5772	-6	3prime_fragment	FALSE	canonical	3	35	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCAGCTTTTGGAGTCTG	4733	False	NA	6	True	AATAAA	-8	NA	43262601	43264865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_43263137_43263299
ENSMUSG00000028456.19_8	chr4	+	6328	38	NIC	ENSMUSG00000028456.19	novel	6354	39	NA	NA	6	-6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	6.68950313213602	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCAGCTTTTGGAGTCTG	8	True	NA	6	True	AATAAA	-8	NA	43058958	43264865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_43059286_43091227_43091328_43095745_43095864_43096898_43097023_43101800_43101875_43115102_43115161_43165743_43165979_43180327_43180643_43182768_43182860_43230117_43230165_43232529_43232609_43234665_43234741_43235181_43235402_43236919_43237148_43237696_43237839_43239296_43239467_43239845_43239962_43240224_43240389_43241006_43241158_43243234_43243304_43244701_43244792_43245467_43245597_43249456_43249582_43250216_43250303_43255474_43255602_43255820_43255918_43256128_43256273_43256775_43256854_43257275_43257354_43257846_43257936_43258149_43258303_43258420_43258545_43258650_43258708_43258868_43258950_43259461_43259610_43261681_43261775_43262976_43263137_43263299
ENSMUSG00000028458.13_0	chr4	+	2514	10	FSM	ENSMUSG00000028458.13	ENSMUST00000060864.13	3947	10	1179	254	-203	16	multi-exon	FALSE	canonical	3	35	junction_4	6.61647774709307	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCATCTCTAGTTTGGG	1	True	NA	55	True	NA	NA	NA	43443117	43447810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43443639_43443782_43443905_43444030_43444080_43444572_43444720_43445040_43445124_43445283_43445375_43445522_43445607_43445728_43445819_43445938_43446069_43446613
ENSMUSG00000028458.13_2	chr4	+	3460	9	NIC	ENSMUSG00000028458.13	novel	3947	10	NA	NA	351	-10	intron_retention	FALSE	canonical	3	35	junction_3	6.50840802347241	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCACTCAGCGGAGCGCC	14	True	NA	29	True	AATAAA	-26	NA	43442289	43447784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_43443905_43444030_43444080_43444572_43444720_43445040_43445124_43445283_43445375_43445522_43445607_43445728_43445819_43445938_43446069_43446613
ENSMUSG00000028458.13_7	chr4	+	2983	1	Genic_Genomic	ENSMUSG00000028458.13	novel	NA	NA	NA	NA	140	8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTAGCTCTCCTCATCCT	1926	False	NA	13	True	AATAAA	-25	NA	43445089	43448072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_43445100_43448100
ENSMUSG00000028458.13_8	chr4	+	1802	7	ISM	ENSMUSG00000028458.13	ENSMUST00000060864.13	3947	10	2635	273	-1	-3	3prime_fragment	FALSE	canonical	3	35	junction_1	6.66874967458085	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCGGAGCGCCCTCCCCT	1410	False	NA	36	True	AATAAA	-33	NA	43444573	43447791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_43444720_43445040_43445124_43445283_43445375_43445522_43445607_43445728_43445819_43445938_43446069_43446613
ENSMUSG00000028461.13_0	chr4	+	801	6	FSM	ENSMUSG00000028461.13	ENSMUST00000030181.12	817	6	15	1	0	-1	multi-exon	FALSE	canonical	3	301	junction_5	16.9162643630324	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGGTGTTCCTCTGTGCT	-11	True	NA	13	True	AGTAAA	-44	NA	43493376	43495920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508_43495622_43495696
ENSMUSG00000028461.13_1	chr4	+	877	5	FSM	ENSMUSG00000028461.13	ENSMUST00000107922.3	865	5	-13	1	-1	-1	multi-exon	FALSE	canonical	3	315	junction_4	11.5433963806152	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGGTGTTCCTCTGTGCT	-12	True	NA	13	True	AGTAAA	-44	NA	43493375	43495920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508
ENSMUSG00000028464.17_1	chr4	-	1084	9	FSM	ENSMUSG00000028464.17	ENSMUST00000107914.10	1164	9	79	1	-52	0	multi-exon	FALSE	canonical	3	13	junction_1	2.31503239718152	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCAGGGCCCTTTAAGCC	9848	False	NA	-15	True	AATAAA	-15	NA	43523516	43514711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43514862_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
ENSMUSG00000028465.17_1	chr4	-	8369	57	FSM	ENSMUSG00000028465.17	ENSMUST00000030187.14	8393	57	22	2	22	-2	multi-exon	FALSE	canonical	2	114	junction_34	45.4919257244893	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGCAGCCTGGCTTTA	13	True	NA	-8	True	AATAAA	-10	NA	43562400	43531520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43532086_43532191_43532321_43532829_43533013_43533125_43533189_43533303_43533430_43533553_43533679_43533862_43533969_43534389_43534498_43534579_43534766_43535519_43535637_43535737_43535864_43535952_43536137_43536243_43536411_43536523_43536671_43537787_43537908_43537985_43538088_43538189_43538340_43538431_43538603_43538677_43538780_43539090_43539224_43539365_43539548_43539636_43539778_43539975_43540138_43540529_43540674_43542480_43542604_43542701_43542792_43542874_43542969_43543143_43543284_43543435_43543634_43543816_43543937_43544279_43544489_43544575_43544679_43544840_43544970_43545093_43545229_43545406_43545521_43545605_43545723_43545859_43545989_43546749_43546917_43547501_43547797_43547978_43548147_43549085_43549185_43549320_43549530_43549722_43549832_43549937_43550052_43550197_43550379_43550961_43551039_43551185_43551288_43552985_43553142_43553445_43553551_43554277_43554339_43555046_43555175_43555268_43555412_43555601_43555755_43555854_43555985_43556288_43556387_43556620_43556784_43562129
ENSMUSG00000028465.17_19	chr4	-	3683	24	ISM	ENSMUSG00000028465.17	ENSMUST00000030187.14	8393	57	21805	2	7030	-2	3prime_fragment	FALSE	canonical	3	200	junction_19	28.1594165603763	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGCAGCCTGGCTTTA	NA	False	NA	-8	True	AATAAA	-10	NA	43540617	43531520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_43532086_43532191_43532321_43532829_43533013_43533125_43533189_43533303_43533430_43533553_43533679_43533862_43533969_43534389_43534498_43534579_43534766_43535519_43535637_43535737_43535864_43535952_43536137_43536243_43536411_43536523_43536671_43537787_43537908_43537985_43538088_43538189_43538340_43538431_43538603_43538677_43538780_43539090_43539224_43539365_43539548_43539636_43539778_43539975_43540138_43540529
ENSMUSG00000028465.17_27	chr4	-	3112	20	ISM	ENSMUSG00000028465.17	ENSMUST00000030187.14	8393	57	23199	0	8424	0	3prime_fragment	FALSE	canonical	3	200	junction_19	29.3836972154605	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCAGCCTGGCTTTATG	NA	False	NA	-6	True	AATAAA	-12	NA	43539223	43531518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_43532086_43532191_43532321_43532829_43533013_43533125_43533189_43533303_43533430_43533553_43533679_43533862_43533969_43534389_43534498_43534579_43534766_43535519_43535637_43535737_43535864_43535952_43536137_43536243_43536411_43536523_43536671_43537787_43537908_43537985_43538088_43538189_43538340_43538431_43538603_43538677_43538780_43539090
ENSMUSG00000028465.17_9	chr4	-	4651	31	ISM	ENSMUSG00000028465.17	ENSMUST00000030187.14	8393	57	17996	2	3221	-2	3prime_fragment	FALSE	canonical	3	153	junction_30	35.3562818557985	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGCAGCCTGGCTTTA	NA	False	NA	-8	True	AATAAA	-10	NA	43544426	43531520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_43532086_43532191_43532321_43532829_43533013_43533125_43533189_43533303_43533430_43533553_43533679_43533862_43533969_43534389_43534498_43534579_43534766_43535519_43535637_43535737_43535864_43535952_43536137_43536243_43536411_43536523_43536671_43537787_43537908_43537985_43538088_43538189_43538340_43538431_43538603_43538677_43538780_43539090_43539224_43539365_43539548_43539636_43539778_43539975_43540138_43540529_43540674_43542480_43542604_43542701_43542792_43542874_43542969_43543143_43543284_43543435_43543634_43543816_43543937_43544279
ENSMUSG00000028465.17_92	chr4	-	496	2	FSM	ENSMUSG00000028465.17	ENSMUST00000123985.2	937	2	432	9	-102	-9	multi-exon	FALSE	canonical	3	68	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCTTATTATCTTCATA	256	False	NA	-39	True	NA	NA	NA	43562259	43559351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43559718_43562129
ENSMUSG00000028466.16_2	chr4	+	1384	9	FSM	ENSMUSG00000028466.16	ENSMUST00000102944.11	1884	9	312	188	-169	75	multi-exon	TRUE	canonical	3	77	junction_5	10.0615294563004	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTCACGTGCTCTGT	2	True	NA	19	True	AATAAA	-21	NA	43562643	43566872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43562960_43563049_43563207_43563280_43563352_43563468_43563559_43565260_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
ENSMUSG00000028467.16_0	chr4	-	3514	17	FSM	ENSMUSG00000028467.16	ENSMUST00000030189.14	3544	17	23	7	23	-6	multi-exon	FALSE	canonical	3	32	junction_8	9.51314879522022	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTAGTTAGTGTGGTGT	16	True	NA	-8	True	AATAAA	-9	NA	43578850	43566934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43567468_43567724_43567917_43567999_43568116_43568195_43568339_43568437_43568545_43568654_43568807_43568885_43568994_43569180_43569286_43569488_43569662_43569829_43569956_43570036_43570191_43570345_43570449_43570671_43570912_43571188_43571408_43573750_43573867_43574027_43574120_43578015
ENSMUSG00000028467.16_8	chr4	-	2051	13	ISM	ENSMUSG00000028467.16	ENSMUST00000030189.14	3544	17	8161	9	-1070	-8	3prime_fragment	FALSE	canonical	3	32	junction_8	9.28708781050335	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACTAGTTAGTGTGGT	8154	False	NA	-10	True	AATAAA	-7	NA	43570712	43566936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_43567468_43567724_43567917_43567999_43568116_43568195_43568339_43568437_43568545_43568654_43568807_43568885_43568994_43569180_43569286_43569488_43569662_43569829_43569956_43570036_43570191_43570345_43570449_43570671
ENSMUSG00000028468.16_2	chr4	+	1284	1	ISM	ENSMUSG00000028468.16	ENSMUST00000107886.9	5888	9	7481	8	4982	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAATGTTAAGTGTCT	7248	False	NA	2	True	AATAAA	-6	NA	43586195	43587479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_43586200_43587500
ENSMUSG00000028469.16_2	chr4	+	4122	22	FSM	ENSMUSG00000028469.16_ENSMUSG00002075231.1	ENSMUST00000030191.15	3660	22	-477	15	33	-15	multi-exon	TRUE	canonical	0	0	junction_1	1.4630753805464	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAACAACAAAAAATCATG	30	False	NA	NA	False	TATAAA	-3	NA	43631457	43651229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43632852_43633524_43633731_43640139_43640254_43640535_43640672_43640918_43641014_43641193_43641327_43641548_43641634_43643053_43643175_43643334_43643410_43643605_43643684_43644082_43644188_43644307_43644380_43646540_43646701_43646915_43647072_43647148_43647318_43647470_43647618_43648076_43648201_43648346_43648416_43650148_43650324_43650393_43650493_43650707_43650800_43650912
ENSMUSG00000028470.11_1	chr4	-	597	5	FSM	ENSMUSG00000028470.11	ENSMUST00000030192.5	610	5	13	0	-5	0	multi-exon	FALSE	canonical	3	693	junction_3	25.1433390781734	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTATCCCTGTCTTA	1	True	NA	-7	True	AATAAA	-14	NA	43656453	43654228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43654412_43654512_43654586_43654715_43654821_43654905_43655047_43656358
ENSMUSG00000028470.11_6	chr4	-	608	5	FSM	ENSMUSG00000028470.11	ENSMUST00000151238.8	600	5	-10	2	-5	0	multi-exon	FALSE	canonical	3	13	junction_1	305.186316043167	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTATCCCTGTCTTA	1	True	NA	-7	True	AATAAA	-14	NA	43656453	43654228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43654423_43654512_43654586_43654715_43654821_43654905_43655047_43656358
ENSMUSG00000028476.14_0	chr4	+	4374	21	FSM	ENSMUSG00000028476.14	ENSMUST00000030198.7	4433	21	1	58	1	3	multi-exon	TRUE	canonical	3	46	junction_14	9.31812749429841	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTGTACTTCCAAGCA	-11	True	NA	NA	False	AATAAA	-15	NA	43875530	43944748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43875706_43890963_43891023_43894818_43894894_43895849_43895887_43897994_43898081_43900069_43900118_43909579_43909614_43911931_43912130_43913784_43914053_43918313_43918494_43922811_43923025_43925060_43925198_43927145_43927287_43928276_43928466_43930192_43930316_43930888_43931061_43937309_43937503_43938888_43939100_43940656_43940731_43942273_43942430_43943143
ENSMUSG00000028476.14_17	chr4	+	1814	2	ISM	ENSMUSG00000028476.14	ENSMUST00000128463.8	4549	22	66692	-4	1824	4	3prime_fragment	FALSE	canonical	3	57	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTGTACTTCCAAGCAA	4861	False	NA	NA	False	AATAAA	-16	NA	43942221	43944749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_43942430_43943143
ENSMUSG00000028476.14_18	chr4	+	1034	1	ISM	ENSMUSG00000028476.14	ENSMUST00000030198.7	4433	21	68183	60	3315	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTATTTGTACTTCCAAG	6352	False	NA	NA	False	AATAAA	-13	NA	43943712	43944746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_43943700_43944700
ENSMUSG00000028478.19_10	chr4	+	1045	5	FSM	ENSMUSG00000028478.19	ENSMUST00000107845.4	1031	5	-16	2	-8	-1	multi-exon	FALSE	canonical	3	59	junction_1	565.255860208455	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACATGAAGCATCTTTAA	-8	True	NA	19	True	AATAAA	-19	NA	44012669	44032844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_44013003_44018812_44018851_44019873_44019992_44025448_44025561_44032400
ENSMUSG00000028478.19_29	chr4	+	2357	1	NIC	ENSMUSG00000028478.19	novel	1710	6	NA	NA	17798	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATACATGAAGCATCT	NA	False	NA	15	True	AATAAA	-15	NA	44030483	44032840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_44030500_44032800
ENSMUSG00000028478.19_8	chr4	+	1046	5	FSM	ENSMUSG00000028478.19	ENSMUST00000170241.8	1079	5	28	5	-7	-5	multi-exon	FALSE	canonical	3	1242	junction_1	75.1631558677521	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATACATGAAGCATCT	-7	True	NA	15	True	AATAAA	-15	NA	44012670	44032840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44032400
ENSMUSG00000028479.19_1	chr4	-	2799	12	FSM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	111	10	-43	-6	multi-exon	FALSE	canonical	3	48	junction_9	6.79693659727954	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGCAAACTTGATATCT	-32	True	NA	-16	True	NA	NA	NA	44072667	44036835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44066754_44066961_44072361
ENSMUSG00000028479.19_13	chr4	-	3053	3	ISM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	119	20853	-35	2021	5prime_fragment	FALSE	canonical	3	64	junction_2	4	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTAAGCTTATTTTGTG	-24	True	NA	NA	False	AATAAA	-16	NA	44072659	44057678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_44060228_44066754_44066961_44072361
ENSMUSG00000028479.19_3	chr4	-	2722	12	NNC	ENSMUSG00000028479.19	novel	2920	12	NA	NA	-41	-6	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_11	17.3009339068614	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGCAAACTTGATATCT	-30	True	NA	-16	True	NA	NA	NA	44072665	44036835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44066754_44066961_44072436
ENSMUSG00000028479.19_4	chr4	-	2607	11	ISM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	5704	10	-13	-6	3prime_fragment	FALSE	canonical	3	48	junction_9	6.87095335452075	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGCAAACTTGATATCT	5944	False	NA	-16	True	NA	NA	NA	44067074	44036835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44066754
ENSMUSG00000028480.15_0	chr4	+	2023	5	FSM	ENSMUSG00000028480.15	ENSMUST00000030202.14	2320	5	295	2	4	-2	multi-exon	FALSE	canonical	3	229	junction_4	22.0567450001128	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCTTCCTCTAATGCGA	-11	True	NA	34	True	AATAAA	-19	NA	43957695	43979116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43957774_43968111_43968221_43968571_43968676_43970499_43970578_43977462
ENSMUSG00000028480.15_8	chr4	+	1097	1	ISM	ENSMUSG00000028480.15	ENSMUST00000030202.14	2320	5	20618	3	20327	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTCTTCCTCTAATGCG	210	False	NA	33	True	AATAAA	-18	NA	43978018	43979115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_43978000_43979100
ENSMUSG00000028483.14_0	chr4	+	1382	9	FSM	ENSMUSG00000028483.14	ENSMUST00000030206.10	1405	9	15	8	-5	-8	multi-exon	FALSE	canonical	3	309	junction_6	50.2767341819255	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACAACTTCTGATTCTT	NA	False	NA	10	True	TATAAA	-10	NA	83335975	83371569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
ENSMUSG00000028483.14_2	chr4	+	930	6	FSM	ENSMUSG00000028483.14	ENSMUST00000071544.11	942	6	8	4	-5	-4	multi-exon	FALSE	canonical	3	396	junction_3	22.8875512014719	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCTGTTTCTAGTCCCC	NA	False	NA	NA	False	ATTAAA	-13	NA	83335975	83360319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123
ENSMUSG00000028484.17_2	chr4	-	3214	16	FSM	ENSMUSG00000028484.17	ENSMUST00000030207.15	3251	16	34	3	28	-3	multi-exon	FALSE	canonical	3	958	junction_5	345.826738892951	2058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTCTATTAGTAAGTTAT	NA	False	NA	-7	True	ATTAAA	-13	NA	83404662	83373919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_83375317_83376311_83376424_83378080_83378295_83378390_83378493_83378695_83378767_83379422_83379479_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
ENSMUSG00000028484.17_63	chr4	-	1936	11	FSM	ENSMUSG00000028484.17	ENSMUST00000107214.9	1973	11	27	10	27	-10	multi-exon	FALSE	canonical	3	116	junction_1	501.525034270474	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAACCTGATTTTT	NA	False	NA	84	True	AATAAA	-9	NA	83404663	83380117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_83380791_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
ENSMUSG00000028484.17_64	chr4	-	1858	11	FSM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	30	10	25	-10	multi-exon	FALSE	canonical	3	354	junction_1	432.133081353418	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAACCTGATTTTT	NA	False	NA	84	True	AATAAA	-9	NA	83404665	83380117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_83380711_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
ENSMUSG00000028484.17_65	chr4	-	2975	10	ISM	ENSMUSG00000028484.17	ENSMUST00000030207.15	3251	16	34	6202	28	-11	5prime_fragment	FALSE	canonical	3	1502	junction_9	115.542200082913	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAACCTGATTTT	NA	False	NA	83	True	AATAAA	-8	NA	83404662	83380118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
ENSMUSG00000028484.17_67	chr4	-	1800	11	NNC	ENSMUSG00000028484.17	novel	1973	11	NA	NA	28	-11	at_least_one_novel_splicesite	FALSE	canonical	3	221	junction_1	470.836925060047	241	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAACCTGATTTT	NA	False	NA	83	True	AATAAA	-8	NA	83404662	83380118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_83380657_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
ENSMUSG00000028487.19_2	chr4	-	3919	9	NIC	ENSMUSG00000028487.19	novel	3948	7	NA	NA	12	10	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	4.08503365959205	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGGAACTTCTTACAGT	NA	False	NA	NA	False	AATAAA	-32	NA	84593292	84193578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_84194685_84196142_84196177_84209500_84209563_84209929_84211900_84309125_84309362_84332482_84332586_84464441_84464643_84474015_84474142_84593211
ENSMUSG00000028487.19_4	chr4	-	3667	7	NIC	ENSMUSG00000028487.19	novel	4133	8	NA	NA	0	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	4.01732359773132	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAGAAAAGAAACAA	NA	False	NA	NA	False	AATAAA	-14	NA	84593271	84193596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_84194685_84209929_84211900_84309125_84309362_84332482_84332586_84424764_84424849_84474015_84474142_84593211
ENSMUSG00000028487.19_7	chr4	-	3849	7	FSM	ENSMUSG00000028487.19	ENSMUST00000107198.9	3948	7	-32	131	-13	-8	multi-exon	FALSE	canonical	1	4	junction_2	2.98142396999972	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAGAAAAGAAACAA	NA	False	NA	NA	False	AATAAA	-14	NA	84593336	84193596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_84194685_84209929_84211900_84309125_84309362_84332482_84332586_84464441_84464643_84474015_84474142_84593211
ENSMUSG00000028487.19_8	chr4	-	3852	8	NIC	ENSMUSG00000028487.19	novel	3948	7	NA	NA	-7	-5	combination_of_known_junctions	FALSE	canonical	1	4	junction_2	2.84999104903714	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	84593330	84193621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_84194685_84196142_84196177_84209929_84211900_84309125_84309362_84332482_84332586_84464441_84464643_84474015_84474142_84593211
ENSMUSG00000028488.16_0	chr4	+	2820	9	FSM	ENSMUSG00000028488.16	ENSMUST00000030212.15	2822	9	-7	9	-7	-9	multi-exon	FALSE	canonical	3	246	junction_4	17.2191753577226	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACGAAACAGAGGCTTCT	NA	False	NA	19	True	AATAAA	-9	NA	85123670	85307608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790
ENSMUSG00000028488.16_1	chr4	+	4550	8	NIC	ENSMUSG00000028488.16	novel	2822	9	NA	NA	-13	-9	intron_retention	FALSE	canonical	3	246	junction_4	16.9957977999605	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACGAAACAGAGGCTTCT	NA	False	NA	19	True	AATAAA	-9	NA	85123664	85307608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85297648_85299641_85299746_85304026_85304158_85305790
ENSMUSG00000028488.16_14	chr4	+	1666	1	ISM	ENSMUSG00000028488.16	ENSMUST00000030212.15	2822	9	182265	9	11365	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACGAAACAGAGGCTTCT	NA	False	NA	19	True	AATAAA	-9	NA	85305942	85307608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_85305900_85307600
ENSMUSG00000028492.14_2	chr4	-	1940	4	FSM	ENSMUSG00000028492.14	ENSMUST00000151481.8	1716	4	-5	-219	-5	219	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTAGGTTTGTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	86457359	86362658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_86364055_86397109_86397316_86405976_86406157_86457201
ENSMUSG00000028494.13_0	chr4	-	1685	8	FSM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	62	141	-12	-141	multi-exon	FALSE	canonical	3	453	junction_2	61.6944412539141	582	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTGCTCCTGTGTGGTC	NA	False	NA	-21	True	AATAAA	-15	NA	86588235	86574942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
ENSMUSG00000028495.15_2	chr4	-	830	5	FSM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	45	3	-13	-3	multi-exon	FALSE	canonical	3	14010	junction_1	3685.72343645043	2944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGCTTTCATTAATAG	NA	False	NA	NA	False	AATAAA	-18	NA	86775604	86772899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ENSMUSG00000028495.15_4	chr4	-	785	4	FSM	ENSMUSG00000028495.15	ENSMUST00000136174.8	1128	4	484	-141	471	-3	multi-exon	FALSE	canonical	3	14010	junction_1	4247.77282820068	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGCTTTCATTAATAG	NA	False	NA	NA	False	AATAAA	-18	NA	86775098	86772899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964
ENSMUSG00000028496.18_1	chr4	-	2081	11	FSM	ENSMUSG00000028496.18	ENSMUST00000078090.12	6069	11	30	3958	30	33	multi-exon	TRUE	canonical	2	10	junction_9	3.7	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTTATTTTTCTTTAAAG	NA	False	NA	NA	False	AATAAA	-16	NA	87951571	87692119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_87692384_87700523_87700596_87701885_87701958_87707523_87707624_87710089_87710220_87712172_87712249_87758918_87759627_87792074_87792219_87798302_87798386_87949760_87949942_87951320
ENSMUSG00000028496.18_3	chr4	-	1171	1	ISM	ENSMUSG00000028496.18	ENSMUST00000078090.12	6069	11	262263	6	35193	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTATTGTGACTCCTTTA	NA	False	NA	NA	False	NA	NA	NA	87689338	87688167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_87688200_87689300
ENSMUSG00000028497.13_0	chr4	-	4728	6	NIC	ENSMUSG00000028497.13	novel	4680	7	NA	NA	60	225	combination_of_known_splicesites	TRUE	canonical	1	1	junction_5	2.48193472919817	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATAGGGAACCCAGGTCA	NA	False	NA	NA	False	AATAAA	-13	NA	88357092	88328352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_88332584_88337935_88338062_88341227_88341335_88344972_88345086_88353175_88353304_88357069
ENSMUSG00000028497.13_1	chr4	-	4652	7	FSM	ENSMUSG00000028497.13	ENSMUST00000151280.8	4680	7	22	6	9	-6	multi-exon	FALSE	canonical	2	3	junction_1	2.26691175145591	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTATAAGAAGGCTGAGCT	NA	False	NA	NA	False	ATTAAA	-14	NA	88357143	88328583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_88332584_88337935_88338062_88341227_88341335_88344972_88345086_88353175_88353304_88355696_88355801_88357069
ENSMUSG00000028514.16_52	chr4	+	4559	20	ISM	ENSMUSG00000028514.16	ENSMUST00000094933.5	10575	68	93965	5	-18294	0	3prime_fragment	FALSE	canonical	3	93	junction_6	15.0229740961143	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTAGAATTGGAGTC	NA	False	NA	7	True	AATAAA	-7	NA	106267395	106298514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_106267550_106267980_106268106_106268496_106268639_106269288_106269440_106270775_106270872_106271571_106271676_106273164_106273279_106275388_106275486_106277630_106277748_106278155_106278249_106280656_106280760_106282501_106282624_106283682_106283797_106285684_106285751_106287721_106287789_106288810_106288890_106292175_106292252_106293529_106293617_106293941_106294053_106295973
ENSMUSG00000028514.16_7	chr4	+	8910	68	FSM	ENSMUSG00000028514.16	ENSMUST00000094933.5	10575	68	-17	1682	-3	-1677	multi-exon	TRUE	canonical	3	60	junction_13	48.8076771804264	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGATCTGCAATCATTTG	NA	False	NA	6	True	AATAAA	-14	NA	106173413	106296837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_106173984_106198410_106198577_106199538_106199607_106203731_106203876_106204475_106204599_106209129_106209166_106209878_106209945_106212870_106212937_106215596_106215672_106216212_106216372_106217319_106217435_106217614_106217719_106219099_106219208_106219353_106219450_106219534_106219697_106219884_106219933_106225223_106225332_106225919_106226070_106227265_106227398_106228180_106228293_106229884_106229962_106230855_106230997_106231187_106231242_106232843_106232960_106234525_106234593_106234705_106234817_106236235_106236335_106236425_106236600_106237265_106237352_106237624_106237719_106239431_106239588_106242619_106242718_106244675_106244772_106244886_106245116_106245697_106245858_106247389_106247546_106249554_106249626_106254365_106254527_106256246_106256309_106258167_106258360_106259236_106259355_106261120_106261266_106263587_106263708_106264209_106264336_106265133_106265233_106266008_106266092_106266480_106266623_106266807_106266928_106267328_106267550_106267980_106268106_106268496_106268639_106269288_106269440_106270775_106270872_106271571_106271676_106273164_106273279_106275388_106275486_106277630_106277748_106278155_106278249_106280656_106280760_106282501_106282624_106283682_106283797_106285684_106285751_106287721_106287789_106288810_106288890_106292175_106292252_106293529_106293617_106293941_106294053_106295973
ENSMUSG00000028514.16_71	chr4	+	2123	1	ISM	ENSMUSG00000028514.16	ENSMUST00000094933.5	10575	68	122964	2	10705	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAGAATTGGAGTCTCA	NA	False	NA	10	True	AATAAA	-10	NA	106296394	106298517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_106296400_106298500
ENSMUSG00000028514.16_98	chr4	+	5710	29	ISM	ENSMUSG00000028514.16	ENSMUST00000094933.5	10575	68	84798	5	-27461	0	3prime_fragment	FALSE	canonical	3	78	junction_2	18.6584499651509	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTAGAATTGGAGTC	NA	False	NA	7	True	AATAAA	-7	NA	106258228	106298514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_106258360_106259236_106259355_106261120_106261266_106263587_106263708_106264209_106264336_106265133_106265233_106266008_106266092_106266480_106266623_106266807_106266928_106267328_106267550_106267980_106268106_106268496_106268639_106269288_106269440_106270775_106270872_106271571_106271676_106273164_106273279_106275388_106275486_106277630_106277748_106278155_106278249_106280656_106280760_106282501_106282624_106283682_106283797_106285684_106285751_106287721_106287789_106288810_106288890_106292175_106292252_106293529_106293617_106293941_106294053_106295973
ENSMUSG00000028517.9_1	chr4	+	3071	6	FSM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	76	12	76	-12	multi-exon	FALSE	canonical	3	181	junction_2	17.8616908494129	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACTAACCAAGGCACTGG	NA	False	NA	1	True	AATAAA	-11	NA	105014619	105089949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_105015161_105051999_105052158_105065720_105066002_105066396_105066455_105076524_105076702_105088093
ENSMUSG00000028517.9_12	chr4	+	1648	1	ISM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	73758	12	73758	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACTAACCAAGGCACTGG	NA	False	NA	1	True	AATAAA	-11	NA	105088301	105089949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_105088300_105089900
ENSMUSG00000028518.9_0	chr4	-	7954	9	FSM	ENSMUSG00000028518.9	ENSMUST00000030243.8	7969	9	10	5	10	-5	multi-exon	FALSE	canonical	3	64	junction_5	8.06903804675625	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGTGTTGTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-10	NA	104967077	104887075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_104893528_104893895_104894023_104896918_104897424_104904287_104904513_104906530_104906619_104908398_104908544_104909112_104909207_104932610_104932753_104966901
ENSMUSG00000028518.9_1	chr4	-	3379	1	ISM	ENSMUSG00000028518.9	ENSMUST00000030243.8	7969	9	76635	3	76635	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTTGTCTGAAGCTGC	NA	False	NA	-3	True	AATAAA	-12	NA	104890452	104887073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_104887100_104890500
ENSMUSG00000028518.9_6	chr4	-	7803	8	NIC	ENSMUSG00000028518.9	novel	7969	9	NA	NA	21	-3	combination_of_known_splicesites	TRUE	canonical	2	4	junction_7	26.3733012800477	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTTGTCTGAAGCTGC	NA	False	NA	-3	True	AATAAA	-12	NA	104967066	104887073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_104893528_104893895_104894023_104896918_104897424_104904287_104904513_104906530_104906619_104908398_104908544_104909112_104909207_104966901
ENSMUSG00000028519.17_0	chr4	+	1269	6	ISM	ENSMUSG00000028519.17	ENSMUST00000146078.8	2462	15	-21	61798	-21	-383	5prime_fragment	FALSE	canonical	3	42	junction_1	2.63818119165458	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTGAAGATAATCTCACT	NA	False	NA	NA	False	AATAAA	-25	NA	104224765	104537196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649
ENSMUSG00000028519.17_1	chr4	+	1156	7	ISM	ENSMUSG00000028519.17	ENSMUST00000106830.9	5278	15	-21	64461	-21	1	5prime_fragment	FALSE	canonical	3	42	junction_1	2.40947204913349	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGACTGTTGTAACTTTC	NA	False	NA	9	True	AATAAA	-16	NA	104224765	104537580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266
ENSMUSG00000028519.17_2	chr4	+	1069	8	NIC	ENSMUSG00000028519.17	novel	5278	15	NA	NA	-18	-1	combination_of_known_junctions	FALSE	canonical	3	27	junction_7	7.28991475552747	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGACTGTTGTAACTT	NA	False	NA	7	True	AATAAA	-14	NA	104224768	104537578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266_104537306_104537387
ENSMUSG00000028519.17_3	chr4	+	5379	17	NNC	ENSMUSG00000028519.17	novel	5278	15	NA	NA	-11	-9	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	20.376150274279	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAACAGCTTAGCCTGG	NA	False	NA	NA	False	AATAAA	-9	NA	104224775	104602032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266_104537306_104538794_104538861_104545579_104545640_104570818_104570870_104570960_104571009_104575406_104575470_104577718_104577828_104584756_104585306_104588821_104588950_104589266_104589378_104598709
ENSMUSG00000028521.18_1	chr4	-	1999	1	ISM	ENSMUSG00000028521.18	ENSMUST00000150285.8	4242	10	42513	4	42021	3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTGTGTTAGAATTCC	NA	False	NA	-2	True	AATAAA	-13	NA	103029848	103027849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_103027800_103029800
ENSMUSG00000028521.18_2	chr4	-	4155	12	FSM	ENSMUSG00000028521.18	ENSMUST00000036195.13	4021	12	-132	-2	-132	2	multi-exon	FALSE	canonical	3	35	junction_4	6.03022689155527	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGTGTGTTAGAATTC	5526	False	NA	-3	True	AATAAA	-12	NA	103072132	103027850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_103030978_103042018_103042102_103046983_103047063_103048028_103048097_103062302_103062396_103065306_103065410_103067725_103067795_103068499_103068572_103070361_103070430_103071067_103071155_103071255_103071290_103071860
ENSMUSG00000028522.17_19	chr4	+	4637	13	FSM	ENSMUSG00000028522.17	ENSMUST00000106857.8	4752	13	110	5	6	-2	multi-exon	FALSE	canonical	3	89	junction_1	18.0662361572323	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATACTTGTGTGGTGTC	453	False	NA	10	True	ATTAAA	-11	NA	102976592	103022944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
ENSMUSG00000028522.17_3	chr4	+	4724	14	NIC	ENSMUSG00000028522.17	novel	4830	15	NA	NA	-11	-2	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	42.5459028127721	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATACTTGTGTGGTGTC	2542	False	NA	10	True	ATTAAA	-11	NA	102971616	103022944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_102971717_102972756_102972858_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
ENSMUSG00000028522.17_44	chr4	+	2586	1	ISM	ENSMUSG00000028522.17	ENSMUST00000106858.8	4830	15	48767	7	4576	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATACTTGTGTGGTGTC	NA	False	NA	10	True	ATTAAA	-11	NA	103020358	103022944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_103020400_103022900
ENSMUSG00000028522.17_8	chr4	+	4788	15	NIC	ENSMUSG00000028522.17	novel	4703	14	NA	NA	-25	-2	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	47.5884246772816	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATACTTGTGTGGTGTC	2859	False	NA	10	True	ATTAAA	-11	NA	102971933	103022944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_102972021_102972756_102972858_102975435_102975513_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
ENSMUSG00000028522.17_9	chr4	+	4701	14	NIC	ENSMUSG00000028522.17	novel	4703	14	NA	NA	-15	-2	combination_of_known_splicesites	FALSE	canonical	3	20	junction_2	41.8667935524905	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATACTTGTGTGGTGTC	2869	False	NA	10	True	ATTAAA	-11	NA	102971943	103022944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_102972021_102972756_102972858_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
ENSMUSG00000028527.19_2	chr4	+	4168	6	FSM	ENSMUSG00000028527.19	ENSMUST00000102780.8	4186	6	15	3	3	-3	multi-exon	FALSE	canonical	3	31	junction_1	98.0848612172133	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATGTGATGGAATTTCA	NA	False	NA	16	True	AATAAA	-14	NA	101276488	101324189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_101276568_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
ENSMUSG00000028527.19_20	chr4	+	2489	1	ISM	ENSMUSG00000028527.19	ENSMUST00000102780.8	4186	6	45226	4	17280	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATATGTGATGGAATTTC	NA	False	NA	15	True	AATAAA	-13	NA	101321699	101324188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_101321700_101324200
ENSMUSG00000028527.19_3	chr4	+	4306	6	FSM	ENSMUSG00000028527.19	ENSMUST00000106946.8	4360	6	49	5	19	-5	multi-exon	FALSE	canonical	3	20	junction_1	102.253410701062	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAATATGTGATGGAATTT	NA	False	NA	14	True	AATAAA	-12	NA	101276534	101324187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_101276754_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
ENSMUSG00000028527.19_6	chr4	+	4078	5	ISM	ENSMUSG00000028527.19	ENSMUST00000106945.8	4175	6	416	8	2	-8	3prime_fragment	FALSE	canonical	3	206	junction_2	35.8355619462009	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCTTAATATGTGATGGAA	NA	False	NA	11	True	AATAAA	-9	NA	101276931	101324184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
ENSMUSG00000028528.18_1	chr4	+	5018	19	NIC	ENSMUSG00000028528.18	novel	5127	20	NA	NA	34	7	combination_of_known_junctions	TRUE	canonical	3	22	junction_1	23.5903830583462	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAAAATACTTTTAGAAA	NA	False	NA	-3	True	ATTAAA	-5	NA	101353878	101499986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_101353961_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471369_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
ENSMUSG00000028528.18_29	chr4	+	5391	20	NIC	ENSMUSG00000028528.18	novel	5258	19	NA	NA	-74	-5	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	27.8557821347373	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACTTTTAGAAATATA	9122	False	NA	1	True	ATTAAA	-9	NA	101364993	101499990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_101365380_101389194_101389260_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471369_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
ENSMUSG00000028528.18_41	chr4	+	3545	8	ISM	ENSMUSG00000028528.18	ENSMUST00000106933.2	5191	19	67916	-7	67916	7	3prime_fragment	FALSE	canonical	3	96	junction_2	9.14732033918978	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAAAATACTTTTAGAAA	NA	False	NA	-3	True	ATTAAA	-5	NA	101475706	101499986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
ENSMUSG00000028528.18_47	chr4	+	1894	1	ISM	ENSMUSG00000028528.18	ENSMUST00000106930.8	5127	20	144252	6	90306	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACTTTTAGAAATATA	1397	False	NA	1	True	ATTAAA	-9	NA	101498096	101499990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_101498100_101500000
ENSMUSG00000028528.18_6	chr4	+	5069	20	FSM	ENSMUSG00000028528.18	ENSMUST00000106930.8	5127	20	48	10	48	7	multi-exon	FALSE	canonical	3	57	junction_1	19.3392228428705	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAAAATACTTTTAGAAA	NA	False	NA	-3	True	ATTAAA	-5	NA	101353892	101499986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_101353961_101389194_101389260_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471369_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
ENSMUSG00000028530.15_0	chr4	-	4874	25	FSM	ENSMUSG00000028530.15	ENSMUST00000102781.10	4906	25	29	3	20	-3	multi-exon	FALSE	canonical	3	155	junction_18	17.726657186283	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATGCATATGCCTTTTA	NA	False	NA	-10	True	AATAAA	-14	NA	101122450	101009566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_101010788_101011734_101011846_101012212_101012331_101013589_101013763_101014148_101014274_101014950_101015144_101016010_101016106_101016211_101016363_101017228_101017381_101019003_101019140_101020045_101020174_101020854_101020943_101021654_101021799_101023739_101023847_101028431_101028619_101031282_101031407_101032270_101032429_101034764_101034954_101036651_101036992_101038976_101039141_101041533_101041688_101046275_101046400_101048671_101048871_101050979_101051061_101122238
ENSMUSG00000028532.15_0	chr4	+	5760	27	FSM	ENSMUSG00000028532.15	ENSMUST00000030257.15	5765	27	-1	6	-1	-6	multi-exon	FALSE	canonical	3	174	junction_5	18.5926832335326	425	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTCGAGGGGCTGCTGGT	NA	False	NA	12	True	AATAAA	-14	NA	100633870	100861735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_100634566_100722178_100722242_100754853_100755003_100775238_100775346_100806269_100806397_100809202_100809348_100810230_100810448_100816646_100816797_100821622_100821857_100823381_100823532_100824142_100824267_100825253_100825372_100828077_100828247_100831202_100831346_100831975_100832158_100833542_100833654_100838167_100838291_100840501_100840602_100840690_100840808_100845278_100845440_100845747_100845835_100846575_100846693_100848020_100848173_100849925_100850088_100851231_100851310_100851931_100852034_100860058
ENSMUSG00000028536.13_0	chr4	+	882	3	FSM	ENSMUSG00000028536.13	ENSMUST00000030261.6	958	3	24	52	24	-52	multi-exon	FALSE	canonical	3	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATATTTTCACAGTTATT	8964	False	NA	NA	False	NA	NA	NA	118384463	118387373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_118384535_118386395_118386509_118386675
ENSMUSG00000028538.13_0	chr4	-	2494	11	NIC	ENSMUSG00000028538.13	novel	2143	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_9	21.0437639218843	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGCCTCCTGTTGTTT	1887	False	NA	-7	True	AATAAA	-12	NA	117992086	117789356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117964745_117964891_117991586
ENSMUSG00000028538.13_1	chr4	-	2549	12	FSM	ENSMUSG00000028538.13	ENSMUST00000030263.9	2549	12	-6	6	-6	0	multi-exon	FALSE	canonical	3	35	junction_11	17.3052325722645	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGCCTCCTGTTGTTT	1880	False	NA	-7	True	AATAAA	-12	NA	117992093	117789356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991586
ENSMUSG00000028538.13_12	chr4	-	2199	12	FSM	ENSMUSG00000028538.13	ENSMUST00000106410.8	2225	12	24	2	0	0	multi-exon	FALSE	canonical	3	30	junction_11	18.1899981599189	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGCCTCCTGTTGTTT	1886	False	NA	-7	True	AATAAA	-12	NA	117992087	117789356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991930
ENSMUSG00000028538.13_14	chr4	-	2584	12	NIC	ENSMUSG00000028538.13	novel	2549	12	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	26.3545438866066	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGCCTCCTGTTGTTT	1881	False	NA	-7	True	AATAAA	-12	NA	117992092	117789356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117790334_117797206_117797354_117797550_117797698_117814631_117814716_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117964745_117964891_117991586
ENSMUSG00000028538.13_15	chr4	-	2241	12	NIC	ENSMUSG00000028538.13	novel	2143	11	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	26.8084728187943	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGCCTCCTGTTGTTT	1880	False	NA	-7	True	AATAAA	-12	NA	117992093	117789356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117790334_117797206_117797354_117797550_117797698_117814631_117814716_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117964745_117964891_117991930
ENSMUSG00000028538.13_16	chr4	-	2299	3	ISM	ENSMUSG00000028538.13	ENSMUST00000097912.8	2143	11	193361	-7	26927	1	3prime_fragment	FALSE	canonical	3	79	junction_2	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTGTTGTTTTCTCTGA	NA	False	NA	0	True	AATAAA	-19	NA	117798718	117789349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117790334_117797206_117797354_117797550
ENSMUSG00000028538.13_31	chr4	-	2046	7	ISM	ENSMUSG00000028538.13	ENSMUST00000097912.8	2143	11	170123	2	3689	-2	3prime_fragment	FALSE	canonical	3	57	junction_3	12.0473602456675	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATCTGGCCTCCTGTTGT	3737	False	NA	-9	True	AATAAA	-10	NA	117821956	117789358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526
ENSMUSG00000028538.13_5	chr4	-	2181	11	FSM	ENSMUSG00000028538.13	ENSMUST00000097912.8	2143	11	-38	0	-6	0	multi-exon	FALSE	canonical	3	26	junction_9	21.8286508973871	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGCCTCCTGTTGTTT	1856	False	NA	-7	True	AATAAA	-12	NA	117992117	117789356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117964745_117964891_117991930
ENSMUSG00000028538.13_7	chr4	-	2633	13	NIC	ENSMUSG00000028538.13	novel	2549	12	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	23.5914297056273	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGCCTCCTGTTGTTT	1880	False	NA	-7	True	AATAAA	-12	NA	117992093	117789356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117790334_117797206_117797354_117797550_117797698_117814631_117814716_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991586
ENSMUSG00000028538.13_8	chr4	-	2132	8	NIC	ENSMUSG00000028538.13	novel	2143	11	NA	NA	3689	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	28.2004486865448	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGCCTCCTGTTGTTT	3737	False	NA	-7	True	AATAAA	-12	NA	117821956	117789356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117790334_117797206_117797354_117797550_117797698_117814631_117814716_117815624_117815812_117816271_117816368_117817194_117817259_117821526
ENSMUSG00000028539.15_0	chr4	-	1829	5	NIC	ENSMUSG00000028539.15	novel	1568	6	NA	NA	-1	1	intron_retention	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTGTCAGATCCTTTC	NA	False	NA	NA	False	NA	NA	NA	117786695	117783357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117784266_117784357_117784497_117784820_117785340_117786215_117786366_117786582
ENSMUSG00000028540.7_0	chr4	-	2278	6	FSM	ENSMUSG00000028540.7	ENSMUST00000030265.4	2555	6	12	265	0	-1	multi-exon	FALSE	canonical	3	66	junction_1	6.70522184569608	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTTTCTCTTTATTCA	NA	False	NA	-8	True	AATAAA	-14	NA	117749217	117746104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748906
ENSMUSG00000028540.7_5	chr4	-	2254	6	NIC	ENSMUSG00000028540.7	novel	2555	6	NA	NA	13	-1	combination_of_known_splicesites	TRUE	canonical	2	6	junction_5	27.9399355761605	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTTTCTCTTTATTCA	NA	False	NA	-8	True	AATAAA	-14	NA	117749204	117746104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748917
ENSMUSG00000028541.15_0	chr4	-	4451	14	NIC	ENSMUSG00000028541.15	novel	4093	13	NA	NA	1	-4	intron_retention	FALSE	canonical	1	2	junction_3	33.2134926599802	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCCTAGTTCTGCACAC	NA	False	NA	NA	False	ATTAAA	-14	NA	117740672	117726460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117727026_117727106_117727186_117727302_117727373_117727712_117727768_117728260_117728387_117728943_117729058_117729185_117731201_117734076_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511_117738868_117738972_117739015_117740298
ENSMUSG00000028541.15_17	chr4	-	2229	7	ISM	ENSMUSG00000028541.15	ENSMUST00000084325.10	4093	13	-295	3875	26	-4	5prime_fragment	FALSE	canonical	2	4	junction_6	25.0044440494529	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGCCCCCTTGTCTGTCT	NA	False	NA	-13	True	AGTAAA	-13	NA	117740647	117730331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117731201_117734076_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511_117738868_117740298
ENSMUSG00000028541.15_18	chr4	-	5156	7	NIC	ENSMUSG00000028541.15	novel	2312	8	NA	NA	17	-4	intron_retention	FALSE	canonical	3	58	junction_1	9.15908777602272	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGCCCCCTTGTCTGTCT	NA	False	NA	-13	True	AGTAAA	-13	NA	117740656	117730331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511_117738868_117738972_117739015_117740298
ENSMUSG00000028541.15_2	chr4	-	3167	7	FSM	ENSMUSG00000078588.11	ENSMUST00000164853.8	3990	7	-1358	2181	-1030	44	multi-exon	FALSE	canonical	1	2	junction_3	2.14087209644419	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGTACAGCCCCGGGG	NA	False	NA	NA	False	AATAAA	-29	NA	117730784	117725901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117727026_117727106_117727186_117727302_117727373_117727712_117727768_117728260_117728387_117728943_117729058_117729185
ENSMUSG00000028541.15_7	chr4	-	2284	8	FSM	ENSMUSG00000028541.15	ENSMUST00000030266.12	2312	8	24	4	13	-4	multi-exon	FALSE	canonical	3	58	junction_2	8.55951553082585	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGCCCCCTTGTCTGTCT	NA	False	NA	-13	True	AGTAAA	-13	NA	117740660	117730331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117731201_117734076_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511_117738868_117738972_117739015_117740298
ENSMUSG00000028541.15_9	chr4	-	3669	7	ISM	ENSMUSG00000028541.15	ENSMUST00000030266.12	2312	8	28	-101	17	-9	intron_retention	FALSE	canonical	3	58	junction_2	8.87724932372385	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTGCCACTTCCACTGT	NA	False	NA	-27	True	AATAAA	-7	NA	117740656	117730226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117731201_117734076_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511_117738868_117738972
ENSMUSG00000028542.18_0	chr4	+	3194	14	NIC	ENSMUSG00000028542.18	novel	3479	14	NA	NA	6	4	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	28.5545258539791	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTGCTGATGTGCTT	NA	False	NA	22	True	AATGAA	-16	NA	117692197	117726497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_117692345_117700215_117700333_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117720759_117720885_117721021_117721109_117721214_117721601_117721840_117721950_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
ENSMUSG00000028542.18_13	chr4	+	3327	13	NIC	ENSMUSG00000028542.18	novel	3479	14	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	85	junction_3	9.75071222469871	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTGATGTGCTTTGTC	NA	False	NA	26	True	AATGAA	-20	NA	117692525	117726501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_117692675_117700215_117700333_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117721021_117721109_117721214_117721601_117721840_117721950_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
ENSMUSG00000028542.18_4	chr4	+	3276	14	FSM	ENSMUSG00000028542.18	ENSMUST00000030269.14	3479	14	200	3	-82	-3	multi-exon	FALSE	canonical	2	62	junction_6	13.9750411501337	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGCTGATGTGCTTTG	NA	False	NA	24	True	AATGAA	-18	NA	117692447	117726499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_117692675_117700215_117700333_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117720759_117720885_117721021_117721109_117721214_117721601_117721840_117721950_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
ENSMUSG00000028542.18_9	chr4	+	3299	13	NIC	ENSMUSG00000028542.18	novel	3479	14	NA	NA	8	-1	intron_retention	FALSE	canonical	2	62	junction_6	14.1598022585063	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTGATGTGCTTTGTC	NA	False	NA	26	True	AATGAA	-20	NA	117692537	117726501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_117692675_117700215_117700333_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117720759_117720885_117721021_117721109_117721214_117721601_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
ENSMUSG00000028545.14_0	chr4	+	1530	6	FSM	ENSMUSG00000028545.14	ENSMUST00000129760.8	1448	6	-77	-5	5	-2	multi-exon	FALSE	canonical	2	7	junction_2	5.19230199429887	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCCTTTGCATTTTTTTT	NA	False	NA	6	True	AATAAA	-18	NA	111272207	111317122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_111272598_111288213_111288348_111290283_111290751_111305702_111305852_111311281_111311496_111316946
ENSMUSG00000028545.14_1	chr4	+	1434	6	FSM	ENSMUSG00000028545.14	ENSMUST00000030274.7	1826	6	17	375	17	3	multi-exon	FALSE	canonical	3	7	junction_2	5.19230199429887	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGGCCTTTGCATTTTTT	NA	False	NA	4	True	AATAAA	-16	NA	111272219	111317120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_111272598_111288213_111288348_111290365_111290751_111305702_111305852_111311281_111311496_111316946
ENSMUSG00000028546.18_0	chr4	-	3805	7	NIC	ENSMUSG00000028546.18	novel	3997	7	NA	NA	-13	-8	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	10.286182749473	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAATTTGAGCTTCCC	NA	False	NA	NA	False	AATAAA	-12	NA	110209119	110060941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_110063857_110066936_110066976_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
ENSMUSG00000028546.18_1	chr4	-	2388	1	ISM	ENSMUSG00000028546.18	ENSMUST00000106598.8	3997	7	81401	17	17022	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGAGCTTCCCAAATTT	NA	False	NA	NA	False	AATAAA	-18	NA	110063323	110060935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_110060900_110063300
ENSMUSG00000028546.18_3	chr4	-	3788	6	NIC	ENSMUSG00000028546.18	novel	3761	6	NA	NA	13	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	12	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGAGCTTCCCAAATTT	NA	False	NA	NA	False	AATAAA	-18	NA	110209093	110060935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_110063899_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
ENSMUSG00000028546.18_4	chr4	-	3851	7	NIC	ENSMUSG00000028546.18	novel	4149	7	NA	NA	-17	-8	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	11.852097798374	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAATTTGAGCTTCCC	NA	False	NA	NA	False	AATAAA	-12	NA	110209123	110060941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_110063899_110066936_110066976_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
ENSMUSG00000028546.18_5	chr4	-	3765	6	FSM	ENSMUSG00000028546.18	ENSMUST00000106603.9	3761	6	-12	8	-12	-8	multi-exon	FALSE	canonical	3	15	junction_1	6.48074069840786	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAATTTGAGCTTCCC	NA	False	NA	NA	False	AATAAA	-12	NA	110209118	110060941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_110063857_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
ENSMUSG00000028546.18_6	chr4	-	4303	5	ISM	ENSMUSG00000028546.18	ENSMUST00000106603.9	3761	6	-5	4229	-5	-1607	5prime_fragment	FALSE	canonical	3	24	junction_1	3.83242742918897	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110209111	110065162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
ENSMUSG00000028546.18_7	chr4	-	1623	6	NIC	ENSMUSG00000028546.18	novel	3997	7	NA	NA	-5	-2640	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	8.61162005664439	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAAGATTATTAAAGAAT	NA	False	NA	NA	False	TTTAAA	-5	NA	110209111	110066195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_110066976_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
ENSMUSG00000028549.18_0	chr4	-	772	9	FSM	ENSMUSG00000028549.18	ENSMUST00000146258.2	2806	9	44	1990	-8	-61	multi-exon	FALSE	canonical	3	74	junction_5	47.6377935572167	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAATCTGTGTATATGC	NA	False	NA	-3	True	AATAAA	-28	NA	99717379	99655628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99690333_99690470_99702294_99702338_99717319
ENSMUSG00000028549.18_1	chr4	-	627	8	NIC	ENSMUSG00000028549.18	novel	2806	9	NA	NA	3	-59	combination_of_known_splicesites	FALSE	canonical	3	12	junction_6	80.1386553520375	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCTGTGTATATGCCT	NA	False	NA	-1	True	AATAAA	-30	NA	99717368	99655626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99702294_99702338_99717319
ENSMUSG00000028549.18_2	chr4	-	555	7	NIC	ENSMUSG00000028549.18	novel	716	8	NA	NA	-8	-75	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	78.2206636524021	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCCTTTGTGTGCAAAA	NA	False	NA	-17	True	AATAAA	-14	NA	99717379	99655642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99702294_99702338_99717319
ENSMUSG00000028549.18_3	chr4	-	731	8	NIC	ENSMUSG00000028549.18	novel	2806	9	NA	NA	-24	-75	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	82.4376078235745	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCCTTTGTGTGCAAAA	NA	False	NA	-17	True	AATAAA	-14	NA	99717395	99655642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99690333_99690470_99717319
ENSMUSG00000028550.16_0	chr4	+	2925	11	FSM	ENSMUSG00000028550.16	ENSMUST00000030279.15	3178	11	235	18	22	-14	multi-exon	FALSE	canonical	3	33	junction_1	14.1265707091282	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACATGAAAACATAAGA	NA	False	NA	-5	True	NA	NA	NA	99082405	99148006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_99082690_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
ENSMUSG00000028550.16_1	chr4	+	2772	11	FSM	ENSMUSG00000028550.16	ENSMUST00000180278.2	2792	11	6	14	6	-14	multi-exon	FALSE	canonical	3	50	junction_1	10.6155546251715	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACATGAAAACATAAGA	NA	False	NA	-5	True	NA	NA	NA	99082389	99148006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
ENSMUSG00000028550.16_10	chr4	+	2311	8	ISM	ENSMUSG00000028550.16	ENSMUST00000180278.2	2792	11	23929	14	-15	-14	3prime_fragment	FALSE	canonical	3	54	junction_2	9.83745445753532	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACATGAAAACATAAGA	NA	False	NA	-5	True	NA	NA	NA	99106312	99148006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
ENSMUSG00000028550.16_3	chr4	+	2705	8	NIC	ENSMUSG00000028550.16	novel	2792	11	NA	NA	10	-14	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	24.0577536400239	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACATGAAAACATAAGA	NA	False	NA	-5	True	NA	NA	NA	99082180	99148006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99146633
ENSMUSG00000028551.15_0	chr4	-	2049	3	FSM	ENSMUSG00000028551.15	ENSMUST00000097921.10	2471	3	415	7	415	-7	multi-exon	FALSE	canonical	3	20	junction_2	1	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGACCACATTTTCCTG	7258	False	NA	NA	False	ATTAAA	-15	NA	109523971	109518079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_109518824_109522214_109522355_109522806
ENSMUSG00000028551.15_1	chr4	-	2482	2	FSM	ENSMUSG00000028551.15	ENSMUST00000063531.5	1106	2	-1377	1	440	-1	multi-exon	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACATTTTCCTGTGATTT	7283	False	NA	NA	False	ATTAAA	-21	NA	109523946	109518073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_109518824_109522214
ENSMUSG00000028552.14_0	chr4	+	5006	25	FSM	ENSMUSG00000028552.14	ENSMUST00000102729.10	5190	25	17	167	17	-167	multi-exon	FALSE	canonical	3	117	junction_16	21.9326225188771	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTGTACTATATCAT	NA	False	NA	2	True	AATAAA	-12	NA	109137481	109244847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178415_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109239981_109240164_109242515
ENSMUSG00000028552.14_1	chr4	+	4824	24	NIC	ENSMUSG00000028552.14	novel	5190	25	NA	NA	10	-174	combination_of_known_junctions	TRUE	canonical	3	29	junction_23	34.4426868398588	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAGTAAAAATGTGTACT	NA	False	NA	-5	True	AATAAA	-5	NA	109137474	109244840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178415_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109242515
ENSMUSG00000028552.14_3	chr4	+	5107	25	FSM	ENSMUSG00000028552.14	ENSMUST00000175776.8	2802	25	-120	-2185	-11	-167	multi-exon	FALSE	canonical	3	25	junction_9	34.7439043414653	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTGTACTATATCAT	NA	False	NA	2	True	AATAAA	-12	NA	109137488	109244847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178523_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109239981_109240164_109242515
ENSMUSG00000028552.14_32	chr4	+	1844	1	ISM	ENSMUSG00000028552.14	ENSMUST00000102729.10	5190	25	105557	149	15233	-149	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGCATTGAAACTTTGT	7288	False	NA	20	True	AATAAA	-30	NA	109243021	109244865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_109243000_109244900
ENSMUSG00000028555.16_0	chr4	+	2305	18	FSM	ENSMUSG00000028555.16	ENSMUST00000064129.14	2356	18	42	9	0	-9	multi-exon	FALSE	canonical	1	2	junction_14	2.90923835738311	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTTAATATAGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	109264325	109301933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_109264407_109273183_109273289_109278489_109278622_109279642_109279720_109280071_109280140_109283497_109283563_109285327_109285428_109286083_109286150_109288052_109288162_109288587_109288656_109288735_109288796_109290185_109290348_109295945_109296038_109297718_109297840_109299423_109299536_109299893_109300009_109300704_109300822_109301278
ENSMUSG00000028555.16_1	chr4	+	1952	17	NIC	ENSMUSG00000028555.16	novel	2356	18	NA	NA	1	100	combination_of_known_splicesites	TRUE	canonical	1	2	junction_14	2.97843813936096	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTGGTGTTTAAAAAACCA	NA	False	NA	NA	False	AATACA	-14	NA	109264307	109301679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_109264407_109273183_109273289_109278489_109278622_109279642_109279720_109280071_109280140_109283497_109283563_109285327_109285428_109286083_109286150_109288052_109288162_109288587_109288656_109288735_109288796_109290185_109290348_109295945_109296038_109297718_109297840_109299423_109299536_109299893_109300009_109301278
ENSMUSG00000028556.16_1	chr4	-	6795	48	FSM	ENSMUSG00000028556.16	ENSMUST00000205650.2	6297	48	-102	-396	51	-5	multi-exon	FALSE	canonical	3	95	junction_7	16.1052727349995	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAATTTTAATGAGTGG	NA	False	NA	-11	True	ATTAAA	-14	NA	99009101	98825098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_98825538_98829130_98829299_98830826_98830934_98832876_98833021_98833364_98833602_98833721_98833812_98834865_98835001_98843552_98843685_98846298_98846443_98847213_98847407_98849573_98849675_98850437_98850597_98854528_98854682_98855459_98855595_98857866_98857964_98859031_98859129_98861363_98861500_98861599_98861783_98864109_98864265_98866100_98866271_98872926_98873067_98875560_98875732_98877239_98877354_98877453_98877595_98879600_98879697_98880605_98880696_98889269_98889440_98891988_98892154_98896168_98896401_98897489_98897577_98903931_98904034_98904863_98905003_98908257_98908329_98911578_98911697_98943558_98943722_98945037_98945132_98949415_98949559_98952186_98952353_98953614_98953696_98958414_98958565_98960641_98960709_98967102_98967189_98967656_98967870_98967956_98968087_98970930_98971000_98971243_98971420_98977752_98977859_99008961
ENSMUSG00000028556.16_5	chr4	-	6887	49	FSM	ENSMUSG00000028556.16	ENSMUST00000030286.14	7127	49	49	191	49	-5	multi-exon	FALSE	canonical	3	14	junction_27	28.048685042955	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAATTTTAATGAGTGG	NA	False	NA	-11	True	ATTAAA	-14	NA	99009103	98825098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_98825538_98829130_98829299_98830826_98830934_98832876_98833021_98833364_98833602_98833721_98833812_98834865_98835001_98843552_98843685_98846298_98846443_98847213_98847407_98849573_98849675_98850437_98850597_98854528_98854682_98855459_98855595_98857866_98857964_98859031_98859129_98861363_98861500_98861599_98861783_98864109_98864265_98866100_98866271_98872926_98873067_98875560_98875732_98877239_98877354_98877453_98877595_98879600_98879697_98880605_98880696_98881883_98881974_98889269_98889440_98891988_98892154_98896168_98896401_98897489_98897577_98903931_98904034_98904863_98905003_98908257_98908329_98911578_98911697_98943558_98943722_98945037_98945132_98949415_98949559_98952186_98952353_98953614_98953696_98958414_98958565_98960641_98960709_98967102_98967189_98967656_98967870_98967956_98968087_98970930_98971000_98971243_98971420_98977752_98977859_99008961
ENSMUSG00000028556.16_53	chr4	-	2290	18	ISM	ENSMUSG00000028556.16	ENSMUST00000205650.2	6297	48	-106	78365	47	-7682	5prime_fragment	FALSE	canonical	3	117	junction_9	10.0827029934427	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAAGATTTGCTGTTTC	NA	False	NA	NA	False	ATTAAA	-10	NA	99009105	98903859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_98904034_98904863_98905003_98908257_98908329_98911578_98911697_98943558_98943722_98945037_98945132_98949415_98949559_98952186_98952353_98953614_98953696_98958414_98958565_98960641_98960709_98967102_98967189_98967656_98967870_98967956_98968087_98970930_98971000_98971243_98971420_98977752_98977859_99008961
ENSMUSG00000028556.16_54	chr4	-	1282	10	ISM	ENSMUSG00000028556.16	ENSMUST00000205650.2	6297	48	-90	128044	63	-1549	5prime_fragment	FALSE	canonical	3	117	junction_1	10.3171916936948	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTTCAATGCTAATT	NA	False	NA	NA	False	AATAAA	-17	NA	99009089	98953538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_98953696_98958414_98958565_98960641_98960709_98967102_98967189_98967656_98967870_98967956_98968087_98970930_98971000_98971243_98971420_98977752_98977859_99008961
ENSMUSG00000028556.16_9	chr4	-	6809	49	FSM	ENSMUSG00000028556.16	ENSMUST00000075836.12	6704	49	-106	1	47	-1	multi-exon	FALSE	canonical	3	12	junction_8	28.4259515622999	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTAATGAGTGGGATT	NA	False	NA	-7	True	ATTAAA	-18	NA	99009105	98825094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_98825538_98829130_98829299_98830826_98830934_98832876_98833021_98833364_98833602_98833721_98833812_98834865_98834992_98842102_98842118_98843552_98843685_98846298_98846443_98847213_98847407_98849573_98849675_98850437_98850597_98854528_98854682_98855459_98855595_98857866_98857964_98859031_98859129_98861363_98861500_98861599_98861783_98864109_98864265_98866100_98866271_98872926_98873067_98875560_98875732_98877239_98877354_98877453_98877595_98879600_98879697_98880605_98880696_98889269_98889440_98891988_98892154_98896168_98896401_98897489_98897577_98903931_98904034_98904863_98905003_98908257_98908329_98911578_98911697_98943558_98943722_98945037_98945132_98949415_98949559_98952186_98952353_98953614_98953696_98958414_98958565_98960641_98960709_98967102_98967189_98967656_98967870_98967956_98968087_98970930_98971000_98971243_98971420_98977752_98977859_99008961
ENSMUSG00000028557.11_0	chr4	-	1492	1	ISM	ENSMUSG00000028557.11	ENSMUST00000030284.10	4061	3	22626	1460	22626	341	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGCTGAAGTTGTGCCA	NA	False	NA	-12	True	AGTAAA	-9	NA	109311246	109309754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_109309800_109311200
ENSMUSG00000028557.11_1	chr4	-	2584	3	FSM	ENSMUSG00000028557.11	ENSMUST00000030284.10	4061	3	17	1460	17	341	multi-exon	FALSE	canonical	3	201	junction_2	15	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGCTGAAGTTGTGCCA	NA	False	NA	-12	True	AGTAAA	-9	NA	109333855	109309754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_109311620_109314094_109314265_109333306
ENSMUSG00000028558.15_0	chr4	+	1943	9	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16148	-23	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	5.12195031213697	34	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTGTTACTTGTTTG	NA	False	NA	-19	True	NA	NA	NA	109075533	109111745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_109075716_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344_109103489_109108523_109108617_109110946
ENSMUSG00000028559.18_1	chr4	-	2563	20	FSM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	35	6	21	-1	multi-exon	FALSE	canonical	1	25	junction_17	99.0531349615264	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATATGTTTCTTTCAT	NA	False	NA	-7	True	CATAAA	-19	NA	108975198	108918852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
ENSMUSG00000028559.18_3	chr4	-	2832	24	FSM	ENSMUSG00000028559.18	ENSMUST00000030288.14	2871	24	39	0	1	0	multi-exon	FALSE	canonical	1	25	junction_18	119.667039647815	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	-6	True	CATAAA	-20	NA	109059430	108918851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ENSMUSG00000028559.18_4	chr4	-	2792	23	FSM	ENSMUSG00000028559.18	ENSMUST00000162787.9	2408	23	39	-423	1	-1	multi-exon	FALSE	canonical	1	25	junction_17	111.643220473462	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATATGTTTCTTTCAT	NA	False	NA	-7	True	CATAAA	-19	NA	109059430	108918852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ENSMUSG00000028559.18_7	chr4	-	2581	21	FSM	ENSMUSG00000028559.18	ENSMUST00000084366.13	3134	21	43	510	43	0	multi-exon	FALSE	canonical	1	25	junction_18	113.002776514562	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	-6	True	CATAAA	-20	NA	108975176	108918851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
ENSMUSG00000028560.12_0	chr4	+	3234	8	NIC	ENSMUSG00000028560.12	novel	3577	9	NA	NA	-41	-10	combination_of_known_junctions	FALSE	canonical	3	214	junction_1	120.154492387161	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACCAAATGTGTGATTT	NA	False	NA	8	True	AATAAA	-14	NA	98812159	98823770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_98812481_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
ENSMUSG00000028560.12_1	chr4	+	3453	9	FSM	ENSMUSG00000028560.12	ENSMUST00000030289.9	3577	9	114	10	-40	-10	multi-exon	FALSE	canonical	3	153	junction_1	150.352710318105	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACCAAATGTGTGATTT	NA	False	NA	8	True	AATAAA	-14	NA	98812160	98823770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_98812481_98814691_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
ENSMUSG00000028560.12_2	chr4	+	3473	9	FSM	ENSMUSG00000028560.12	ENSMUST00000091358.11	3527	9	44	10	-41	-10	multi-exon	FALSE	canonical	3	170	junction_1	145.930152384625	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACCAAATGTGTGATTT	NA	False	NA	8	True	AATAAA	-14	NA	98812159	98823770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_98812481_98814672_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
ENSMUSG00000028560.12_28	chr4	+	2277	4	ISM	ENSMUSG00000028560.12	ENSMUST00000091358.11	3527	9	7230	10	3012	-10	3prime_fragment	FALSE	canonical	3	534	junction_1	21.1712593442672	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACCAAATGTGTGATTT	NA	False	NA	8	True	AATAAA	-14	NA	98819345	98823770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_98819786_98820422_98820594_98821060_98821263_98822306
ENSMUSG00000028563.17_0	chr4	-	973	7	FSM	ENSMUSG00000028563.17	ENSMUST00000102793.11	1027	7	53	1	-7	-1	multi-exon	FALSE	canonical	0	0	junction_6	212.976328888134	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTGACCTGTTATTA	NA	False	NA	-5	True	AATAAA	-17	NA	98271490	98243607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98268854_98268929_98271306
ENSMUSG00000028567.9_0	chr4	+	1281	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	67	11	33	-11	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	520	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGATGCTATGGTGGCCT	NA	False	NA	17	True	ATTAAA	-11	NA	108691864	108719313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
ENSMUSG00000028568.17_0	chr4	-	2516	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102741.8	1033	6	-8	-1475	-8	-948	multi-exon	FALSE	canonical	3	96	junction_5	414.71464888523	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAATAACAGTACAAAA	NA	False	NA	-49	True	AATAAA	-8	NA	108690769	108672439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690339
ENSMUSG00000028568.17_1	chr4	-	2136	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	42	963	-8	-963	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAACAGTAATAA	NA	False	NA	-64	True	NA	NA	NA	108690769	108672454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
ENSMUSG00000028572.14_0	chr4	+	5434	22	FSM	ENSMUSG00000028572.14	ENSMUST00000030306.14	5517	22	77	6	-46	-6	multi-exon	FALSE	canonical	3	114	junction_6	15.5427871146882	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCAGTTTGCTGTGGTTTT	4791	False	NA	26	True	AATAAA	-39	NA	95855553	95913644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_95855794_95862622_95862709_95877874_95877948_95880385_95880437_95881302_95881436_95884000_95884069_95884995_95885059_95886931_95887016_95889406_95889574_95890680_95890822_95891718_95891921_95892533_95892645_95897538_95897627_95897705_95897767_95901434_95901576_95903044_95903139_95904645_95904681_95905179_95905263_95905824_95905926_95907839_95907942_95909804_95909874_95910403
ENSMUSG00000028572.14_30	chr4	+	2031	1	ISM	ENSMUSG00000028572.14	ENSMUST00000030306.14	5517	22	56141	2	2140	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGTGGTTTTAGTG	NA	False	NA	30	True	AATAAA	-43	NA	95911617	95913648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_95911600_95913600
ENSMUSG00000028573.19_0	chr4	+	1765	15	NIC	ENSMUSG00000028573.19	novel	1891	16	NA	NA	-2	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	8.90768986749708	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAACTGGAGTCACTT	NA	False	NA	2	True	AATAAA	-15	NA	95445753	95815168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
ENSMUSG00000028573.19_1	chr4	+	1866	16	FSM	ENSMUSG00000028573.19	ENSMUST00000079223.11	1891	16	17	8	4	-3	multi-exon	FALSE	canonical	3	19	junction_11	4.66476151587624	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAACTGGAGTCACTT	NA	False	NA	2	True	AATAAA	-15	NA	95445760	95815168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
ENSMUSG00000028573.19_10	chr4	+	1752	15	NIC	ENSMUSG00000028573.19	novel	1891	16	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	1	1	junction_12	8.68995432223029	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAACTGGAGTCACTT	NA	False	NA	2	True	AATAAA	-15	NA	95445753	95815168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95737818_95737914_95811161_95811224_95814959
ENSMUSG00000028573.19_2	chr4	+	1306	7	ISM	ENSMUSG00000028573.19	ENSMUST00000176162.8	3037	13	-4	101330	0	402	5prime_fragment	FALSE	canonical	3	24	junction_6	5.18544972870135	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTCAGTTATTGACTG	NA	False	NA	NA	False	AGTAAA	-17	NA	95445743	95627561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025
ENSMUSG00000028573.19_4	chr4	+	1664	14	NIC	ENSMUSG00000028573.19	novel	1891	16	NA	NA	1	-7	combination_of_known_splicesites	FALSE	canonical	1	3	junction_9	8.27057234197884	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCAAACACAACTGGAGTC	NA	False	NA	-2	True	AATAAA	-11	NA	95445748	95815164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
ENSMUSG00000028576.13_2	chr4	+	2107	20	FSM	ENSMUSG00000028576.13	ENSMUST00000030311.11	2139	20	30	2	30	-2	multi-exon	FALSE	canonical	3	154	junction_8	18.5526129152575	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAACTCCTTTTCCTGTG	NA	False	NA	8	True	AATAAA	-9	NA	94502757	94581464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579956_94580018_94581187
ENSMUSG00000028577.14_1	chr4	-	2715	14	FSM	ENSMUSG00000028577.14	ENSMUST00000107107.9	2784	14	67	2	4	-2	multi-exon	TRUE	canonical	3	626	junction_12	53.7532164993284	1345	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGTGAGGTTTTCCTG	NA	False	NA	-14	True	AATAAA	-13	NA	94491414	94457405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_94458147_94459923_94460089_94462218_94462321_94463402_94463472_94466623_94466693_94470717_94470938_94471650_94471809_94472069_94472240_94474531_94474668_94474989_94475158_94475517_94475639_94475723_94475825_94478117_94478312_94491113
ENSMUSG00000028578.9_11	chr4	-	1983	5	NIC	ENSMUSG00000028578.9	novel	2107	6	NA	NA	5	-4	combination_of_known_splicesites	FALSE	canonical	3	13	junction_3	109.846483785327	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTACAGATATCTTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	94444998	94388321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_94389654_94409298_94409373_94437355_94437432_94439501_94439703_94444698
ENSMUSG00000028578.9_4	chr4	-	2074	6	FSM	ENSMUSG00000028578.9	ENSMUST00000030313.9	2107	6	29	4	-1	-4	multi-exon	FALSE	canonical	3	225	junction_2	22.29798197147	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTACAGATATCTTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	94445004	94388321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_94389654_94409298_94409373_94437355_94437432_94438658_94438744_94439501_94439703_94444698
ENSMUSG00000028578.9_5	chr4	-	1917	4	NIC	ENSMUSG00000028578.9	novel	2107	6	NA	NA	-5	-4	combination_of_known_splicesites	FALSE	canonical	3	7	junction_2	128.416855937563	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTACAGATATCTTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	94445008	94388321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_94389654_94409298_94409373_94439501_94439703_94444698
ENSMUSG00000028578.9_8	chr4	-	1992	5	NIC	ENSMUSG00000028578.9	novel	2107	6	NA	NA	5	-4	combination_of_known_splicesites	FALSE	canonical	1	6	junction_2	114.767972448763	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTACAGATATCTTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	94444998	94388321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_94389654_94409298_94409373_94438658_94438744_94439501_94439703_94444698
ENSMUSG00000028578.9_9	chr4	-	1257	1	ISM	ENSMUSG00000028578.9	ENSMUST00000030313.9	2107	6	55455	4	55425	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTACAGATATCTTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	94389578	94388321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_94388300_94389600
ENSMUSG00000028580.16_12	chr4	+	5334	22	FSM	ENSMUSG00000028580.16	ENSMUST00000030315.13	5389	22	51	4	5	-2	multi-exon	FALSE	canonical	3	218	junction_8	122.217214904643	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTACTGCTCTCAC	NA	False	NA	20	True	AATACA	-14	NA	130390682	130508871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ENSMUSG00000028580.16_214	chr4	+	1504	1	ISM	ENSMUSG00000028580.16	ENSMUST00000030315.13	5389	22	116737	3	116652	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTGTACTGCTCTCACT	NA	False	NA	21	True	AATACA	-15	NA	130507368	130508872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_130507400_130508900
ENSMUSG00000028580.16_26	chr4	+	5331	22	NIC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	218	junction_8	114.255134797804	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTGTACTGCTCTCACT	NA	False	NA	21	True	AATACA	-15	NA	130390680	130508872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ENSMUSG00000028580.16_34	chr4	+	5327	22	FSM	ENSMUSG00000028580.16	ENSMUST00000097864.9	4017	22	-16	-1294	3	-2	multi-exon	TRUE	canonical	3	368	junction_8	95.9617506945964	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTACTGCTCTCAC	NA	False	NA	20	True	AATACA	-14	NA	130390680	130508871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ENSMUSG00000028580.16_4	chr4	+	5333	22	FSM	ENSMUSG00000028580.16	ENSMUST00000097862.3	3991	22	-36	-1306	3	-2	multi-exon	FALSE	canonical	3	304	junction_17	105.62885866236	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTACTGCTCTCAC	NA	False	NA	20	True	AATACA	-14	NA	130390680	130508871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ENSMUSG00000028581.18_11	chr4	+	2473	8	FSM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	124	3	-59	-3	multi-exon	FALSE	canonical	3	425	junction_4	26.2071808199702	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTGTCTCATGTGGTTC	NA	False	NA	19	True	AATAAA	-15	NA	130640559	130663449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
ENSMUSG00000028581.18_12	chr4	+	2451	9	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	-73	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	159.179487921654	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTCATGTGGTTCT	NA	False	NA	20	True	AATAAA	-16	NA	130640545	130663450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771_130662433_130662469
ENSMUSG00000028581.18_14	chr4	+	2449	9	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	-69	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	159.179487921654	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTCATGTGGTTCT	NA	False	NA	20	True	AATAAA	-16	NA	130640549	130663450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771_130662737_130662771
ENSMUSG00000028581.18_61	chr4	+	1270	1	ISM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	21745	2	2838	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTCATGTGGTTCT	NA	False	NA	20	True	AATAAA	-16	NA	130662180	130663450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_130662200_130663400
ENSMUSG00000028582.15_0	chr4	+	3244	25	FSM	ENSMUSG00000028582.15	ENSMUST00000030320.13	3303	25	26	33	26	-15	multi-exon	FALSE	canonical	3	165	junction_8	22.4730934798829	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGGAAAAAAGAAAA	3559	False	NA	-20	True	NA	NA	NA	108477162	108491287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
ENSMUSG00000028583.15_3	chr4	-	1719	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	93	5	-8	-5	multi-exon	FALSE	canonical	3	463	junction_2	58.6153563496802	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATGAGGCCAACATTTG	NA	False	NA	-28	True	AATAAA	-15	NA	143026041	142994005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
ENSMUSG00000028583.15_5	chr4	-	1275	4	ISM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	25532	5	25431	-5	3prime_fragment	FALSE	canonical	3	463	junction_2	12.0277457017791	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATGAGGCCAACATTTG	NA	False	NA	-28	True	AATAAA	-15	NA	143000602	142994005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469
ENSMUSG00000028584.4_0	chr4	+	2408	2	FSM	ENSMUSG00000028584.4	ENSMUST00000052458.3	2324	2	-88	4	-88	-4	multi-exon	FALSE	canonical	2	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTGCCTGTAGTCTATT	NA	False	NA	NA	False	AATAAA	-16	NA	143076238	143097598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_143077382_143096333
ENSMUSG00000028587.19_0	chr4	+	2998	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	8	8	8	-8	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAAAAGAACTGGTATGG	5280	False	NA	13	True	NA	NA	NA	108436658	108472022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
ENSMUSG00000028587.19_12	chr4	+	2872	16	NIC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	9	-8	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	149.780936333329	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAAAAGAACTGGTATGG	5281	False	NA	13	True	NA	NA	NA	108436659	108472022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_108436773_108445872_108445979_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
ENSMUSG00000028590.7_0	chr4	+	506	2	NNC	ENSMUSG00000028590.7	novel	767	2	NA	NA	-784	0	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGAGTAATGTTGGTA	NA	False	NA	NA	False	NA	NA	NA	144130653	144132871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_144130877_144132588
ENSMUSG00000028591.12_0	chr4	-	2644	4	NIC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	4786	-2	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	38.7843038125248	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTGTTGTTGGTTTTGC	NA	False	NA	-6	True	AATAAA	-13	NA	144130201	144118245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907
ENSMUSG00000028591.12_1	chr4	-	2417	4	FSM	ENSMUSG00000028591.12	ENSMUST00000030326.10	2460	4	40	3	-7	-3	multi-exon	FALSE	canonical	3	80	junction_3	9.80929264637478	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTGTTGTTGGTTTTG	NA	False	NA	-7	True	AATAAA	-12	NA	144134994	144118246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_144119688_144121144_144121730_144122249_144122573_144134926
ENSMUSG00000028591.12_2	chr4	-	1649	2	ISM	ENSMUSG00000028591.12	ENSMUST00000030326.10	2460	4	13684	1	13637	-1	3prime_fragment	FALSE	canonical	3	104	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGTTGTTGGTTTTGCT	NA	False	NA	-5	True	AATAAA	-14	NA	144121350	144118244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144119688_144121144
ENSMUSG00000028591.12_3	chr4	-	2193	3	ISM	ENSMUSG00000028591.12	ENSMUST00000030326.10	2460	4	12615	6	12568	-6	3prime_fragment	FALSE	canonical	3	91	junction_2	6.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCTTTTGTTGTTGGTT	NA	False	NA	-10	True	AATAAA	-9	NA	144122419	144118249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144119688_144121144_144121730_144122249
ENSMUSG00000028591.12_4	chr4	-	2526	5	NIC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	-3	-3	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	43.6369969177532	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTGTTGTTGGTTTTG	NA	False	NA	-7	True	AATAAA	-12	NA	144134990	144118246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907_144130021_144134926
ENSMUSG00000028591.12_6	chr4	-	760	1	ISM	ENSMUSG00000028591.12	ENSMUST00000030326.10	2460	4	16028	3	15981	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTGTTGTTGGTTTTG	NA	False	NA	-7	True	AATAAA	-12	NA	144119006	144118246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144118200_144119000
ENSMUSG00000028597.12_0	chr4	-	1014	3	FSM	ENSMUSG00000028597.12	ENSMUST00000030332.7	1289	3	251	24	14	-24	multi-exon	FALSE	canonical	3	159	junction_2	16.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTCTAGCCCGTGGAAA	NA	False	NA	-35	True	AATAAA	-16	NA	108263907	108257610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108258195_108260397_108260660_108263739
ENSMUSG00000028597.12_5	chr4	-	3252	2	ISM	ENSMUSG00000028597.12	ENSMUST00000030332.7	1289	3	1091	26	854	-26	3prime_fragment	FALSE	canonical	3	192	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTCTAGCCCGTGGA	NA	False	NA	-37	True	AATAAA	-14	NA	108263067	108257612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_108258195_108260397
ENSMUSG00000028599.11_1	chr4	-	1950	1	ISM	ENSMUSG00000028599.11	ENSMUST00000030336.11	3818	10	31445	13	31445	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTAATCATTATTTTTGC	NA	False	NA	NA	False	AATAAA	-25	NA	144941995	144940045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144940000_144942000
ENSMUSG00000028599.11_5	chr4	-	3803	10	FSM	ENSMUSG00000028599.11	ENSMUST00000030336.11	3818	10	2	13	2	-13	multi-exon	FALSE	canonical	3	41	junction_7	11.2546286774228	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTAATCATTATTTTTGC	7834	False	NA	NA	False	AATAAA	-25	NA	144973438	144940045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_144942671_144946298_144946507_144949523_144949559_144950072_144950151_144950821_144951055_144951381_144951476_144951899_144952053_144954037_144954167_144955573_144955677_144973293
ENSMUSG00000028601.19_1	chr4	+	1260	10	FSM	ENSMUSG00000028601.19	ENSMUST00000052999.13	1307	10	42	5	-9	-3	multi-exon	TRUE	canonical	3	713	junction_3	43.9463758530471	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGCTTGTGCTGGAATT	NA	False	NA	19	True	AATAAA	-12	NA	108022675	108036500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
ENSMUSG00000028601.19_3	chr4	+	1534	10	FSM	ENSMUSG00000028601.19	ENSMUST00000130942.8	1319	10	17	-232	-5	-3	multi-exon	FALSE	canonical	3	90	junction_3	222.335582197522	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGCTTGTGCTGGAATT	NA	False	NA	19	True	AATAAA	-12	NA	108022679	108036500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
ENSMUSG00000028602.13_0	chr4	-	7429	12	ISM	ENSMUSG00000028602.13	ENSMUST00000030339.13	3414	13	11981	-4140	11981	4140	3prime_fragment	FALSE	canonical	2	5	junction_11	3.68826595910924	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATATATTTATAATTCTTA	NA	False	NA	NA	False	AATAAA	-12	NA	145029736	144989566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144995806_145000852_145001067_145004095_145004122_145011715_145011770_145011895_145011995_145014548_145014647_145014995_145015087_145019163_145019331_145019668_145019760_145023419_145023564_145025303_145025421_145029647
ENSMUSG00000028602.13_1	chr4	-	3316	13	NNC	ENSMUSG00000028602.13	novel	3414	13	NA	NA	9378	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	4.81028989655394	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCTGCCTTTGGTATTTG	NA	False	NA	NA	False	AATAAA	-15	NA	145032339	144993706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_144995806_145000852_145001067_145004095_145004122_145011715_145011770_145011895_145011995_145014548_145014647_145014995_145015087_145019163_145019331_145019668_145019760_145023419_145023564_145025303_145025421_145029647_145029736_145032311
ENSMUSG00000028602.13_4	chr4	-	2492	4	ISM	ENSMUSG00000028602.13	ENSMUST00000030339.13	3414	13	29847	2	29847	0	3prime_fragment	FALSE	canonical	3	13	junction_1	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGCTGCCTTTGGTATT	7642	False	NA	NA	False	AATAAA	-13	NA	145011870	144993708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_144995806_145000852_145001067_145004095_145004122_145011715
ENSMUSG00000028602.13_5	chr4	-	3414	13	FSM	ENSMUSG00000028602.13	ENSMUST00000030339.13	3414	13	-2	2	-2	0	multi-exon	FALSE	canonical	2	5	junction_11	3.685557397916	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGCTGCCTTTGGTATT	NA	False	NA	NA	False	AATAAA	-13	NA	145041719	144993708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_144995806_145000852_145001067_145004095_145004122_145011715_145011770_145011895_145011995_145014548_145014647_145014995_145015087_145019163_145019331_145019668_145019760_145023419_145023564_145025303_145025421_145029647_145029736_145041591
ENSMUSG00000028603.16_0	chr4	-	2604	16	FSM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	33	3	5	-3	multi-exon	FALSE	canonical	3	305	junction_7	132.795314509043	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCCTTGGCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-13	NA	107975696	107901038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
ENSMUSG00000028603.16_1	chr4	-	1423	5	FSM	ENSMUSG00000028603.16	ENSMUST00000106701.2	772	5	57	-708	1	-3	multi-exon	TRUE	canonical	3	566	junction_3	53.5601297608585	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCCTTGGCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-13	NA	107928559	107901038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453
ENSMUSG00000028607.17_0	chr4	-	2335	5	FSM	ENSMUSG00000028607.17	ENSMUST00000030345.15	2372	5	35	2	13	0	multi-exon	FALSE	canonical	3	130	junction_2	11.5866302262565	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGTTCCTTTTTCCT	NA	False	NA	-2	True	AATAAA	-16	NA	107780772	107761179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_107761761_107764117_107765423_107769837_107769945_107771460_107771542_107780511
ENSMUSG00000028608.16_11	chr4	+	647	7	FSM	ENSMUSG00000028608.16	ENSMUST00000125107.8	1551	7	219	685	-1	-1	multi-exon	FALSE	canonical	3	677	junction_4	47.0558179187229	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTGCGTGAAGGTGGTC	NA	False	NA	13	True	AATAAA	-18	NA	107747314	107754314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUSG00000028608.16_14	chr4	+	2579	6	ISM	ENSMUSG00000028608.16	ENSMUST00000106727.10	926	9	255	1	-1	-1	intron_retention	FALSE	canonical	3	677	junction_4	48.5246329197862	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTGCGTGAAGGTGGTC	NA	False	NA	13	True	AATAAA	-18	NA	107747314	107754314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069
ENSMUSG00000028608.16_2	chr4	+	2613	7	FSM	ENSMUSG00000028608.16	ENSMUST00000120473.8	835	7	-7	-1771	-1	-1	multi-exon	FALSE	canonical	3	475	junction_1	106.405931330082	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTGCGTGAAGGTGGTC	NA	False	NA	13	True	AATAAA	-18	NA	107747058	107754314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069
ENSMUSG00000028608.16_3	chr4	+	687	8	FSM	ENSMUSG00000028608.16	ENSMUST00000135454.8	2997	8	43	2267	7	-1	multi-exon	FALSE	canonical	3	475	junction_1	98.5130261769001	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTGCGTGAAGGTGGTC	NA	False	NA	13	True	AATAAA	-18	NA	107747052	107754314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUSG00000028609.7_0	chr4	+	633	5	FSM	ENSMUSG00000028609.7	ENSMUST00000030348.6	692	5	22	37	22	0	multi-exon	FALSE	canonical	3	977	junction_1	47.9446295219809	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCGATAACATCTTTTT	NA	False	NA	13	True	AATAAA	-15	NA	107736973	107744584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107737143_107738089_107738149_107740264_107740376_107742113_107742197_107744373
ENSMUSG00000028609.7_8	chr4	+	209	1	ISM	ENSMUSG00000028609.7	ENSMUST00000030348.6	692	5	7424	37	4189	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCGATAACATCTTTTT	NA	False	NA	13	True	AATAAA	-15	NA	107744375	107744584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_107744400_107744600
ENSMUSG00000028610.17_0	chr4	-	1674	4	FSM	ENSMUSG00000028610.17	ENSMUST00000069271.5	1861	4	182	5	182	-5	multi-exon	FALSE	canonical	3	6	junction_2	4.18993502999218	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATCCTTGTGAAAGCTT	NA	False	NA	NA	False	AATAAA	-10	NA	107541245	107533493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_107534267_107536449_107536673_107537842_107538052_107540776
ENSMUSG00000028610.17_1	chr4	-	1262	3	FSM	ENSMUSG00000028610.17	ENSMUST00000131508.2	704	3	49	-607	49	-5	multi-exon	FALSE	canonical	3	6	junction_2	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATCCTTGTGAAAGCTT	NA	False	NA	NA	False	AATAAA	-10	NA	107538108	107533493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_107534267_107536449_107536673_107537842
ENSMUSG00000028613.16_0	chr4	+	4083	17	NIC	ENSMUSG00000028613.16	novel	7391	19	NA	NA	43	-23	combination_of_known_junctions	TRUE	canonical	3	11	junction_4	21.0887262536171	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAGGAACAACTCTG	NA	False	NA	-15	True	NA	NA	NA	107659403	107731072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107704637_107704764_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107729469
ENSMUSG00000028613.16_1	chr4	+	4070	17	NIC	ENSMUSG00000028613.16	novel	4618	18	NA	NA	-26	-5	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	16.2922527601311	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTATTTGTATAGAATTT	NA	False	NA	3	True	AATAAA	-12	NA	107659431	107731090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107704640_107704764_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107729469
ENSMUSG00000028613.16_12	chr4	+	4209	18	NIC	ENSMUSG00000028613.16	novel	3497	20	NA	NA	-40	-3	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	26.5350848245035	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATTTGTATAGAATTTTC	NA	False	NA	5	True	AATAAA	-14	NA	107659417	107731092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107704640_107704764_107705477_107705601_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107729469
ENSMUSG00000028613.16_13	chr4	+	4128	18	NIC	ENSMUSG00000028613.16	novel	2531	19	NA	NA	-47	-10	combination_of_known_junctions	FALSE	canonical	3	11	junction_4	25.8910413224583	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTGGGTATTTGTATAG	NA	False	NA	-2	True	AATAAA	-7	NA	107659410	107731085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107704637_107704764_107707300_107707340_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107729469
ENSMUSG00000028613.16_15	chr4	+	4286	18	FSM	ENSMUSG00000028613.16	ENSMUST00000106733.10	3333	18	-25	-928	-9	0	multi-exon	FALSE	canonical	2	4	junction_5	24.7261821364517	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGTTCATATGGATAAGA	NA	False	NA	6	True	AATAAA	-17	NA	107659448	107730942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107703435_107703817_107704640_107704764_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107729469
ENSMUSG00000028613.16_2	chr4	+	4121	18	NIC	ENSMUSG00000028613.16	novel	2531	19	NA	NA	-36	-3	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	22.8239842283367	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATTTGTATAGAATTTTC	NA	False	NA	5	True	AATAAA	-14	NA	107659421	107731092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107704640_107704764_107707300_107707340_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107729469
ENSMUSG00000028613.16_23	chr4	+	4456	19	FSM	ENSMUSG00000028613.16	ENSMUST00000030356.10	4555	19	-56	155	-3	-1	multi-exon	FALSE	canonical	2	4	junction_5	28.291090513961	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATGTTCATATGGATAAG	NA	False	NA	5	True	AATAAA	-16	NA	107659454	107730941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107703435_107703817_107704640_107704764_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107727208_107727386_107729469
ENSMUSG00000028613.16_3	chr4	+	800	4	FSM	ENSMUSG00000028613.16	ENSMUST00000238405.2	737	4	-90	27	37	-27	multi-exon	FALSE	canonical	3	85	junction_2	7.71722460186015	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGACATTCTCTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	107659397	107700651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412
ENSMUSG00000028613.16_37	chr4	+	4258	18	NIC	ENSMUSG00000028613.16	novel	7391	19	NA	NA	-30	-1	combination_of_known_junctions	FALSE	canonical	3	11	junction_4	26.1980743633195	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTATAGAATTTTCTT	NA	False	NA	7	True	AATAAA	-16	NA	107659427	107731094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107704637_107704764_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107727208_107727386_107729469
ENSMUSG00000028613.16_5	chr4	+	4253	18	FSM	ENSMUSG00000028613.16	ENSMUST00000238584.2	4618	18	362	3	-30	-3	multi-exon	FALSE	canonical	3	14	junction_17	23.2122745240813	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATTTGTATAGAATTTTC	NA	False	NA	5	True	AATAAA	-14	NA	107659427	107731092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107704640_107704764_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107727208_107727386_107729469
ENSMUSG00000028614.15_1	chr4	+	4316	18	FSM	ENSMUSG00000028614.15	ENSMUST00000139560.8	4584	18	250	18	-18	5	multi-exon	FALSE	canonical	3	529	junction_11	46.6085071760132	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGACTGTTCATCAAACA	NA	False	NA	4	True	AATAAA	-15	NA	107225230	107273525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107225346_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107237794_107237904_107238872_107238925_107240781_107240918_107241982_107242076_107243792_107243875_107246647_107246804_107247418_107247659_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
ENSMUSG00000028614.15_62	chr4	+	184	1	ISM	ENSMUSG00000028614.15	ENSMUST00000139560.8	4584	18	48373	6	34695	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	277	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAACACTGAATCTCTGT	NA	False	NA	16	True	AATAAA	-27	NA	107273353	107273537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_107273400_107273500
ENSMUSG00000028617.11_0	chr4	-	1666	8	FSM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	87	2	87	1	multi-exon	FALSE	canonical	3	194	junction_4	9.55755924781585	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGCTTTTGAATTGCA	NA	False	NA	-7	True	AATAAA	-18	NA	107110642	107090712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
ENSMUSG00000028617.11_1	chr4	-	1403	7	ISM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	5844	2	-4161	1	3prime_fragment	FALSE	canonical	3	194	junction_4	8.78761755097604	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGCTTTTGAATTGCA	NA	False	NA	-7	True	AATAAA	-18	NA	107104885	107090712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490
ENSMUSG00000028617.11_5	chr4	-	345	1	ISM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	19672	2	2120	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGCTTTTGAATTGCA	NA	False	NA	-7	True	AATAAA	-18	NA	107091057	107090712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_107090700_107091100
ENSMUSG00000028618.12_0	chr4	+	1453	8	FSM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	312	10	-15	-8	multi-exon	FALSE	canonical	3	1513	junction_5	112.332959889567	1308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCTGAAGCTTGAGTGT	NA	False	NA	5	True	ATTAAA	-17	NA	107035907	107058183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUSG00000028619.16_1	chr4	-	1542	5	FSM	ENSMUSG00000028619.16	ENSMUST00000057043.10	6431	5	219	4670	38	445	multi-exon	FALSE	canonical	3	63	junction_1	11	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTAAAACAAGAGGCATAGT	NA	False	NA	NA	False	AATAAA	-10	NA	107035525	106996021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107035434
ENSMUSG00000028619.16_2	chr4	-	1688	6	NNC	ENSMUSG00000028619.16	novel	6431	5	NA	NA	-38	447	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	29.9492904757358	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACAAGAGGCATAGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	107035518	106996019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_106996997_107004711_107004906_107022744_107022887_107033670_107033822_107034761_107034902_107035434
ENSMUSG00000028619.16_3	chr4	-	1720	5	NIC	ENSMUSG00000028619.16	novel	6431	5	NA	NA	-4	441	combination_of_known_junctions	FALSE	canonical	3	8	junction_4	27.444261695298	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGTACTAAAACAAGAGGCA	NA	False	NA	NA	False	AATAAA	-6	NA	107035409	106996025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107035136
ENSMUSG00000028619.16_9	chr4	-	1939	4	ISM	ENSMUSG00000028619.16	ENSMUST00000058585.14	766	5	101	-763	27	456	3prime_fragment	FALSE	canonical	3	63	junction_1	5.73488351136175	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATAGTTTCCCCCATGA	NA	False	NA	NA	False	AATAAA	-21	NA	107035378	106996010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761
ENSMUSG00000028621.18_1	chr4	+	1525	7	NIC	ENSMUSG00000028621.18	novel	5471	9	NA	NA	-1	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	5.20949986936259	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCAGCCTCACGCTCAG	961	False	NA	3	True	NA	NA	NA	106924214	106941998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_106924239_106925740_106926021_106928066_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106941323
ENSMUSG00000028621.18_2	chr4	+	3016	6	NIC	ENSMUSG00000028621.18	novel	2516	7	NA	NA	-2	-38	intron_retention	FALSE	canonical	3	9	junction_5	2.78567765543682	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATCTCTGTATCCATGA	937	False	NA	-32	True	NA	NA	NA	106924190	106941963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_106926021_106928066_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106941323
ENSMUSG00000028621.18_3	chr4	+	1453	7	FSM	ENSMUSG00000028621.18	ENSMUST00000106758.8	2516	7	7	1056	-1	-34	multi-exon	FALSE	canonical	2	3	junction_1	4.2687494916219	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCTGTATCCATGACAAG	938	False	NA	-28	True	NA	NA	NA	106924191	106941967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_106924243_106925808_106926021_106928066_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106941323
ENSMUSG00000028621.18_4	chr4	+	2298	6	NIC	ENSMUSG00000028621.18	novel	5471	9	NA	NA	-1	5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	4.93963561409139	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTTTGTTTTGTCTGGC	938	False	NA	21	True	ATTAAA	-21	NA	106924191	106943028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_106924239_106928066_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106941323
ENSMUSG00000028621.18_7	chr4	+	1522	7	NIC	ENSMUSG00000028621.18	novel	2516	7	NA	NA	-1	-38	combination_of_known_splicesites	FALSE	canonical	1	1	junction_6	5.61743318211757	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATCTCTGTATCCATGA	938	False	NA	-32	True	NA	NA	NA	106924191	106941963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_106924243_106925808_106926021_106928066_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106941250
ENSMUSG00000028622.12_0	chr4	-	1468	7	FSM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	21	9	21	2	multi-exon	FALSE	canonical	3	549	junction_3	34.5976877840124	496	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTGTGAGATTGTCTGT	NA	False	NA	-17	True	AATAAA	-14	NA	106924044	106913079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
ENSMUSG00000028626.6_2	chr4	+	2673	32	FSM	ENSMUSG00000028626.6	ENSMUST00000030372.6	2924	32	246	5	-117	-5	multi-exon	FALSE	canonical	3	39	junction_2	8.6239508704552	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGTGACTTCTTGTGGA	NA	False	NA	16	True	AATAAA	-17	NA	120896827	120912514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_120896984_120898161_120898237_120899490_120899527_120899612_120899676_120900892_120900947_120901058_120901095_120901191_120901216_120901471_120901526_120901861_120901916_120902019_120902068_120902195_120902253_120902337_120902392_120902680_120902735_120903122_120903177_120903266_120903321_120903425_120903480_120906858_120906913_120907272_120907327_120907551_120907606_120908410_120908456_120908847_120908902_120909164_120909219_120909423_120909478_120909554_120909627_120909777_120909814_120909949_120909995_120910087_120910121_120910254_120910402_120910635_120910691_120910966_120911156_120911449_120911528_120911792
ENSMUSG00000028626.6_25	chr4	+	355	1	ISM	ENSMUSG00000028626.6	ENSMUST00000030372.6	2924	32	15577	6	1963	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAAGTGACTTCTTGTGG	NA	False	NA	15	True	AATAAA	-16	NA	120912158	120912513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_120912200_120912500
ENSMUSG00000028626.6_8	chr4	+	2613	31	NIC	ENSMUSG00000028626.6	novel	2924	32	NA	NA	-132	-5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	12.6901536633722	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGTGACTTCTTGTGGA	NA	False	NA	16	True	AATAAA	-17	NA	120896812	120912514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_120896984_120899490_120899527_120899612_120899676_120900892_120900947_120901058_120901095_120901191_120901216_120901471_120901526_120901861_120901916_120902019_120902068_120902195_120902253_120902337_120902392_120902680_120902735_120903122_120903177_120903266_120903321_120903425_120903480_120906858_120906913_120907272_120907327_120907551_120907606_120908410_120908456_120908847_120908902_120909164_120909219_120909423_120909478_120909554_120909627_120909777_120909814_120909949_120909995_120910087_120910121_120910254_120910402_120910635_120910691_120910966_120911156_120911449_120911528_120911792
ENSMUSG00000028629.10_1	chr4	-	1981	2	FSM	ENSMUSG00000028629.10	ENSMUST00000030375.9	1996	2	9	6	9	0	multi-exon	FALSE	canonical	3	95	junction_1	0	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGTTGACTTGATGTT	NA	False	NA	-15	True	AATAAA	-16	NA	120782193	120778398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_120779894_120781707
ENSMUSG00000028629.10_2	chr4	-	1970	2	FSM	ENSMUSG00000028629.10	ENSMUST00000177880.2	1969	2	-1	0	-1	0	multi-exon	FALSE	canonical	3	24	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGTTGACTTGATGTT	NA	False	NA	-15	True	AATAAA	-16	NA	120782203	120778398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_120779873_120781707
ENSMUSG00000028629.10_3	chr4	-	1865	3	NIC	ENSMUSG00000028629.10	novel	1996	2	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	46.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGTTGACTTGATGTT	NA	False	NA	-15	True	AATAAA	-16	NA	120782203	120778398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_120778610_120778735_120779894_120781707
ENSMUSG00000028630.10_0	chr10	-	3049	1	ISM	ENSMUSG00000028630.10	ENSMUST00000004281.10	6129	3	10493	5	9643	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTACATCTCACCCCTTT	NA	False	NA	-12	True	AATAAA	-14	NA	118694561	118691512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_118691500_118694600
ENSMUSG00000028630.10_1	chr10	-	3785	3	FSM	ENSMUSG00000028630.10	ENSMUST00000004281.10	6129	3	-2	2346	-2	-2346	multi-exon	FALSE	canonical	3	29	junction_2	3.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCTTACTTAAAAAAAAAAG	NA	False	NA	NA	False	AAGAAA	-34	NA	118705056	118693853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_118697059_118704054_118704204_118704625
ENSMUSG00000028631.8_0	chr4	-	4122	14	FSM	ENSMUSG00000028631.8	ENSMUST00000030376.8	3919	14	-205	2	-205	-2	multi-exon	TRUE	canonical	0	0	junction_9	1.49159380228195	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGATTGGTCTTGGTTGT	9226	False	NA	NA	False	ATTAAA	-13	NA	120604650	120553336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_120555304_120555695_120555826_120557088_120557221_120559582_120559683_120561551_120561773_120568419_120568582_120570208_120570298_120572181_120572278_120572447_120572559_120572962_120573089_120573748_120573925_120574121_120574249_120574654_120574746_120604056
ENSMUSG00000028633.8_0	chr4	-	2690	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	8	7	8	-7	multi-exon	TRUE	canonical	3	663	junction_8	52.1791784782653	1166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACCATTGGTGTGCTTTC	NA	False	NA	-25	True	AATAAA	-7	NA	120427465	120397071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
ENSMUSG00000028634.18_0	chr4	+	1153	3	FSM	ENSMUSG00000028634.18	ENSMUST00000136547.2	1359	3	194	12	54	-12	multi-exon	FALSE	canonical	0	0	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTATTGCCAAGCAATGCA	NA	False	NA	NA	False	ATTAAA	-20	NA	119671745	119730522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_119671988_119729233_119729470_119729847
ENSMUSG00000028636.15_0	chr4	-	1538	2	FSM	ENSMUSG00000028636.15	ENSMUST00000140641.2	1543	2	2	3	2	-3	multi-exon	FALSE	canonical	3	317	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGGCGGGTTTCTGGTTT	5569	False	NA	-7	True	AATAAA	-27	NA	119279553	119275729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119276491_119278776
ENSMUSG00000028636.15_1	chr4	-	1385	3	FSM	ENSMUSG00000028636.15	ENSMUST00000030385.13	1443	3	55	3	-7	-3	multi-exon	FALSE	canonical	3	273	junction_2	22	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGGCGGGTTTCTGGTTT	5560	False	NA	-7	True	AATAAA	-27	NA	119279562	119275729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119276491_119278776_119278881_119279042
ENSMUSG00000028637.17_1	chr4	-	2503	15	FSM	ENSMUSG00000028637.17	ENSMUST00000238759.2	3909	15	23	1383	4	-3	multi-exon	FALSE	canonical	2	5	junction_1	6.79285338741071	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGTAATTGTTTGATA	9746	False	NA	NA	False	ATTAAA	-19	NA	119272695	119181045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119181391_119181737_119181806_119188319_119188435_119188678_119188816_119190776_119190919_119196957_119197071_119206926_119207072_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
ENSMUSG00000028637.17_12	chr4	-	3424	9	NIC	ENSMUSG00000028637.17	novel	1789	5	NA	NA	-11	1602	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	7.1370512118101	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	9754	False	NA	NA	False	NA	NA	NA	119272687	119207840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754_119216935_119250753_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
ENSMUSG00000028637.17_17	chr4	-	4763	5	FSM	ENSMUSG00000028637.17	ENSMUST00000238287.2	1789	5	26	-3000	3	848	multi-exon	FALSE	canonical	3	15	junction_4	3.96074487943871	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9768	False	NA	NA	False	NA	NA	NA	119272673	119246846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
ENSMUSG00000028637.17_23	chr4	-	1105	4	FSM	ENSMUSG00000028637.17	ENSMUST00000131141.3	1128	4	23	0	1	0	multi-exon	FALSE	canonical	2	12	junction_1	4.92160768674447	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGTGTTAGTAATTT	2128	False	NA	NA	False	NA	NA	NA	119217088	119209443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754
ENSMUSG00000028637.17_6	chr4	-	1848	9	NIC	ENSMUSG00000028637.17	novel	1789	5	NA	NA	-1	-1	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	4.28478412525065	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTGGTGTTAGTAATT	9741	False	NA	NA	False	NA	NA	NA	119272700	119209444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
ENSMUSG00000028637.17_7	chr4	-	1875	9	NIC	ENSMUSG00000028637.17	novel	1789	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	7.15454401062709	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGTGTTAGTAATTT	9765	False	NA	NA	False	NA	NA	NA	119272676	119209443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_119209900_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
ENSMUSG00000028639.15_10	chr4	-	1525	8	NIC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	262	junction_2	3531.96674123986	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATAATGTCTAGTTTT	NA	False	NA	NA	False	AATAAA	-7	NA	119151695	119135186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_119135565_119136130_119136409_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151400
ENSMUSG00000028639.15_3	chr4	-	1513	8	FSM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	106	9	2	0	multi-exon	FALSE	canonical	3	9851	junction_2	327.608589257214	8796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATAATGTCTAGTTTT	NA	False	NA	NA	False	AATAAA	-7	NA	119151695	119135186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151400
ENSMUSG00000028640.12_25	chr2	+	2537	6	ISM	ENSMUSG00000028640.12	ENSMUST00000170744.2	2776	7	416	8	416	4	3prime_fragment	FALSE	canonical	3	564	junction_3	44.2113107699828	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGAAAGTCTGGTTC	NA	False	NA	14	True	AATAAA	-16	NA	172393326	172400531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
ENSMUSG00000028640.12_4	chr2	+	2826	7	FSM	ENSMUSG00000028640.12	ENSMUST00000030391.9	2838	7	1	11	1	4	multi-exon	FALSE	canonical	3	551	junction_1	51.676611946046	1163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGAAAGTCTGGTTC	NA	False	NA	14	True	AATAAA	-16	NA	172391513	172400531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_172391803_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
ENSMUSG00000028640.12_9	chr2	+	2723	7	FSM	ENSMUSG00000028640.12	ENSMUST00000170744.2	2776	7	45	8	45	4	multi-exon	FALSE	canonical	3	62	junction_1	218.277091992927	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGAAAGTCTGGTTC	NA	False	NA	14	True	AATAAA	-16	NA	172392955	172400531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_172393142_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
ENSMUSG00000028641.17_0	chr4	+	2583	15	FSM	ENSMUSG00000028641.17	ENSMUST00000121111.9	3188	15	3	602	3	1	multi-exon	FALSE	canonical	3	347	junction_5	38.1110755769586	900	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGTGGTTTGTTCCAAG	NA	False	NA	6	True	AATAAA	-18	NA	119090114	119105567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_119090628_119092442_119092596_119093973_119094164_119095061_119095194_119095842_119095983_119098313_119098404_119098678_119098732_119098879_119099002_119101218_119101347_119101581_119101678_119102153_119102305_119103831_119103950_119104327_119104404_119104641_119104783_119105087
ENSMUSG00000028643.12_0	chr4	+	661	3	FSM	ENSMUSG00000028643.12	ENSMUST00000030395.9	733	3	72	0	-29	0	multi-exon	FALSE	canonical	3	443	junction_2	4.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	11	True	AATAAA	-14	NA	119052574	119058495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_119052684_119053068_119053219_119058093
ENSMUSG00000028643.12_1	chr4	+	726	4	FSM	ENSMUSG00000028643.12	ENSMUST00000106345.3	684	4	-42	0	-42	0	multi-exon	FALSE	canonical	0	0	junction_2	208.740668454105	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	11	True	AATAAA	-14	NA	119052561	119058495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_119052684_119053068_119053219_119055955_119056008_119058093
ENSMUSG00000028645.12_2	chr4	+	2509	10	FSM	ENSMUSG00000028645.12	ENSMUST00000030398.10	3260	10	93	658	0	-5	multi-exon	TRUE	canonical	3	565	junction_3	58.8236535946402	1267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTTGGTTTCAAATGC	669	False	NA	31	True	TATAAA	-13	NA	118966000	118994522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
ENSMUSG00000028645.12_25	chr4	+	1998	7	ISM	ENSMUSG00000028645.12	ENSMUST00000030398.10	3260	10	23817	658	23614	-5	3prime_fragment	FALSE	canonical	3	609	junction_2	51.6260593111657	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTTGGTTTCAAATGC	2254	False	NA	31	True	TATAAA	-13	NA	118989724	118994522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
ENSMUSG00000028646.17_1	chr4	+	2564	7	FSM	ENSMUSG00000028646.17	ENSMUST00000030399.7	2593	7	22	7	-6	-3	multi-exon	FALSE	canonical	3	488	junction_1	23.3553467587664	809	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTCAGTGTTTGTTGTGT	NA	False	NA	13	True	AATAAA	-13	NA	123811260	123830783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_123811561_123813641_123813846_123814743_123814944_123817752_123817868_123818539_123818683_123823624_123823774_123829330
ENSMUSG00000028647.14_0	chr4	+	1481	5	FSM	ENSMUSG00000028647.14	ENSMUST00000030400.14	1685	5	184	20	-25	-20	multi-exon	FALSE	canonical	3	284	junction_4	22.6163657557973	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTACTTGTTTTGTTAA	NA	False	NA	20	True	NA	NA	NA	123798808	123806042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629_123803760_123804885
ENSMUSG00000028647.14_6	chr4	+	1500	4	FSM	ENSMUSG00000028647.14	ENSMUST00000137685.2	500	4	8	-1008	8	-19	multi-exon	FALSE	canonical	3	284	junction_3	24.8596057893121	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTACTTGTTTTGTTAAT	NA	False	NA	21	True	NA	NA	NA	123798936	123806043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_123799100_123803426_123803476_123803629_123803760_123804885
ENSMUSG00000028647.14_9	chr4	+	1067	1	ISM	ENSMUSG00000028647.14	ENSMUST00000030400.14	1685	5	6345	26	6041	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGTAAAGTACTTGTTT	NA	False	NA	14	True	NA	NA	NA	123804969	123806036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_123805000_123806000
ENSMUSG00000028648.14_0	chr4	-	2479	2	FSM	ENSMUSG00000028648.14	ENSMUST00000106207.8	680	2	-1800	1	55	-1	multi-exon	FALSE	canonical	3	2108	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTGTTTGCTTTTGGGTC	1908	False	NA	-26	True	AATAAA	-16	NA	123611919	123606503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_123606720_123609656
ENSMUSG00000028648.14_1	chr4	-	505	3	FSM	ENSMUSG00000028648.14	ENSMUST00000030401.14	525	3	47	-27	26	27	multi-exon	FALSE	canonical	3	1318	junction_2	395	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGGTGAAAGGTTGTCCT	1879	False	NA	2	True	AATAAA	-44	NA	123611948	123606475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_123606720_123609656_123609875_123611905
ENSMUSG00000028648.14_3	chr4	-	475	3	FSM	ENSMUSG00000028648.14	ENSMUST00000137312.2	350	3	33	-158	33	-1	multi-exon	FALSE	canonical	3	29	junction_2	1039.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTGTTTGCTTTTGGGTC	1886	False	NA	-26	True	AATAAA	-16	NA	123611941	123606503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_123606720_123609656_123609875_123611900
ENSMUSG00000028648.14_6	chr4	-	546	3	FSM	ENSMUSG00000028648.14	ENSMUST00000106206.8	599	3	45	8	40	-8	multi-exon	FALSE	canonical	3	65	junction_2	1021.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTTAGTCTGTTTGCTT	1893	False	NA	-33	True	AATAAA	-9	NA	123611934	123606510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_123606720_123609656_123609875_123611815
ENSMUSG00000028649.22_22	chr4	-	3784	18	NIC	ENSMUSG00000028649.22	novel	17331	93	NA	NA	-6077	-4	combination_of_known_junctions	FALSE	canonical	3	170	junction_15	32.9400209881379	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAACAATGTTTTGTAATT	NA	False	NA	-16	True	ATTAAA	-10	NA	123272237	123243516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_123244939_123245614_123245745_123248848_123249061_123254702_123254821_123257849_123257868_123259065_123259141_123260087_123260243_123261667_123261831_123263597_123263762_123264378_123264500_123265564_123265754_123266142_123266287_123268107_123268237_123268524_123268720_123270163_123270324_123270847_123271018_123271890_123272011_123272138
ENSMUSG00000028649.22_29	chr4	-	3173	14	NIC	ENSMUSG00000028649.22	novel	17331	93	NA	NA	-2494	-1	combination_of_known_junctions	FALSE	canonical	3	206	junction_8	29.9830326771778	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATGTTTTGTAATTCTT	NA	False	NA	-13	True	ATTAAA	-13	NA	123268654	123243513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_123244939_123245614_123245745_123248848_123249061_123254702_123254821_123257849_123257868_123259065_123259141_123260087_123260243_123261667_123261831_123263597_123263762_123264378_123264500_123265564_123265754_123266142_123266287_123268107_123268237_123268524
ENSMUSG00000028649.22_33	chr4	-	4572	28	NIC	ENSMUSG00000028649.22	novel	17331	93	NA	NA	5780	-752	combination_of_known_junctions	FALSE	canonical	3	140	junction_27	42.1759980891361	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAGTGTTTAAGGAACTCT	8346	False	NA	NA	False	ATTAAA	-14	NA	123278551	123244264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_123244939_123245614_123245745_123248848_123249061_123254702_123254821_123257849_123257868_123259065_123259141_123260087_123260243_123261667_123261831_123263597_123263762_123264378_123264500_123265564_123265754_123266142_123266287_123268107_123268237_123268524_123268720_123270163_123270324_123270847_123271018_123271890_123272011_123272138_123272346_123272449_123272606_123274207_123274382_123275019_123275149_123275557_123275756_123275894_123276051_123276139_123276314_123276405_123276508_123276899_123277002_123277093_123277217_123278437
ENSMUSG00000028649.22_38	chr4	-	4410	22	NIC	ENSMUSG00000028649.22	novel	17331	93	NA	NA	8715	-4	combination_of_known_junctions	FALSE	canonical	3	157	junction_21	38.9447541724302	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAACAATGTTTTGTAATT	NA	False	NA	-16	True	ATTAAA	-10	NA	123275616	123243516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_123244939_123245614_123245745_123248848_123249061_123254702_123254821_123257849_123257868_123259065_123259141_123260087_123260243_123261667_123261831_123263597_123263762_123264378_123264500_123265564_123265754_123266142_123266287_123268107_123268237_123268524_123268720_123270163_123270324_123270847_123271018_123271890_123272011_123272138_123272346_123272449_123272606_123274207_123274382_123275019_123275149_123275557
ENSMUSG00000028649.22_40	chr4	-	5490	29	NIC	ENSMUSG00000028649.22	novel	17331	93	NA	NA	5027	-4	combination_of_known_junctions	FALSE	canonical	3	125	junction_28	44.429260444818	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAACAATGTTTTGTAATT	7593	False	NA	-16	True	ATTAAA	-10	NA	123279304	123243516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_123244939_123245614_123245745_123248848_123249061_123254702_123254821_123257849_123257868_123259065_123259141_123260087_123260243_123261667_123261831_123263597_123263762_123264378_123264500_123265564_123265754_123266142_123266287_123268107_123268237_123268524_123268720_123270163_123270324_123270847_123271018_123271890_123272011_123272138_123272346_123272449_123272606_123274207_123274382_123275019_123275149_123275557_123275756_123275894_123276051_123276139_123276314_123276405_123276508_123276899_123277002_123277093_123277217_123278437_123278665_123279247
ENSMUSG00000028649.22_5	chr4	-	7491	42	NIC	ENSMUSG00000028649.22	novel	17175	90	NA	NA	-20167	-748	combination_of_known_junctions	FALSE	canonical	2	80	junction_41	59.5712821429676	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTTAAGGAACTCTTCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	123326188	123244260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_123244939_123245614_123245745_123248848_123249061_123254702_123254821_123257849_123257868_123259065_123259141_123260087_123260243_123261667_123261831_123263597_123263762_123264378_123264500_123265564_123265754_123266142_123266287_123268107_123268237_123268524_123268720_123270163_123270324_123270847_123271018_123271890_123272011_123272138_123272346_123272449_123272606_123274207_123274382_123275019_123275149_123275557_123275756_123275894_123276051_123276139_123276314_123276405_123276508_123276899_123277002_123277093_123277217_123278437_123278665_123279247_123279480_123281020_123281225_123282911_123283131_123284316_123284425_123284843_123284964_123287862_123288070_123288798_123289041_123289705_123289791_123290886_123291214_123291540_123291701_123293135_123293303_123295185_123295357_123295543_123295706_123325790
ENSMUSG00000028649.22_57	chr4	-	6963	37	NIC	ENSMUSG00000028649.22	novel	17331	93	NA	NA	-6668	-4	combination_of_known_junctions	FALSE	canonical	2	84	junction_29	55.0378657531946	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAACAATGTTTTGTAATT	NA	False	NA	-16	True	ATTAAA	-10	NA	123290999	123243516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_123244939_123245614_123245745_123248848_123249061_123254702_123254821_123257849_123257868_123259065_123259141_123260087_123260243_123261667_123261831_123263597_123263762_123264378_123264500_123265564_123265754_123266142_123266287_123268107_123268237_123268524_123268720_123270163_123270324_123270847_123271018_123271890_123272011_123272138_123272346_123272449_123272606_123274207_123274382_123275019_123275149_123275557_123275756_123275894_123276051_123276139_123276314_123276405_123276508_123276899_123277002_123277093_123277217_123278437_123278665_123279247_123279480_123281020_123281225_123282911_123283131_123284316_123284425_123284843_123284964_123287862_123288070_123288798_123289041_123289705_123289791_123290886
ENSMUSG00000028649.22_6	chr4	-	615	1	ISM	ENSMUSG00000028649.22	ENSMUST00000123765.8	2613	10	19596	88	16114	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATGTTTTGTAATTCTT	NA	False	NA	-13	True	ATTAAA	-13	NA	123244128	123243513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_123243500_123244100
ENSMUSG00000028649.22_9	chr4	-	3019	4	ISM	ENSMUSG00000028649.22	ENSMUST00000154824.8	2808	13	10203	8	4285	-4	3prime_fragment	FALSE	canonical	3	282	junction_1	9.03081145609604	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAACAATGTTTTGTAATT	NA	False	NA	-16	True	ATTAAA	-10	NA	123255957	123243516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_123244939_123245614_123245745_123248848_123249061_123254702
ENSMUSG00000028651.13_0	chr4	-	1179	10	FSM	ENSMUSG00000028651.13	ENSMUST00000030404.5	1188	10	6	3	6	-3	multi-exon	FALSE	canonical	3	832	junction_9	90.3078411481501	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTTGCCTCCTGCAAG	NA	False	NA	-17	True	AATAAA	-22	NA	123033738	123020910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033694
ENSMUSG00000028651.13_2	chr4	-	1169	10	NNC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	9	-2	at_least_one_novel_splicesite	TRUE	canonical	3	100	junction_9	309.335169215497	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTGCCTCCTGCAAGT	NA	False	NA	-16	True	AATAAA	-23	NA	123033735	123020909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033702
ENSMUSG00000028651.13_5	chr4	-	2373	9	NIC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	7	-2	intron_retention	FALSE	canonical	3	832	junction_8	93.9161860384034	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTGCCTCCTGCAAGT	NA	False	NA	-16	True	AATAAA	-23	NA	123033737	123020909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123030692_123031318_123031363_123032658_123032758_123033694
ENSMUSG00000028653.17_2	chr4	+	2058	11	FSM	ENSMUSG00000028653.17	ENSMUST00000102649.4	2074	11	2	14	2	-14	multi-exon	FALSE	canonical	3	89	junction_3	10.336343647538	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAGTTTCTATACAGCAT	NA	False	NA	12	True	AATAAA	-16	NA	122910391	122948728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122945858_122945969_122946276_122946395_122947915
ENSMUSG00000028654.14_0	chr4	+	3508	2	FSM	ENSMUSG00000028654.14	ENSMUST00000030407.8	3501	2	-16	9	-16	-9	multi-exon	FALSE	canonical	3	106	junction_1	0	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAAAATGTCAGAGTGG	3610	False	NA	NA	False	AATAAA	-9	NA	122889875	122896269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_122890812_122893697
ENSMUSG00000028654.14_1	chr4	+	3166	3	FSM	ENSMUSG00000028654.14	ENSMUST00000106252.9	3293	3	120	7	-35	-7	multi-exon	FALSE	canonical	3	37	junction_1	34.5	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATGTCAGAGTGGGG	3591	False	NA	NA	False	AATAAA	-11	NA	122889856	122896271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_122889944_122890306_122890812_122893697
ENSMUSG00000028654.14_5	chr4	+	2175	1	ISM	ENSMUSG00000028654.14	ENSMUST00000106252.9	3293	3	4358	9	963	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAAAATGTCAGAGTGG	7829	False	NA	NA	False	AATAAA	-9	NA	122894094	122896269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_122894100_122896300
ENSMUSG00000028656.15_1	chr4	-	2541	13	NIC	ENSMUSG00000028656.15	novel	2620	13	NA	NA	-2	-15	combination_of_known_junctions	FALSE	canonical	3	137	junction_12	229.274580652399	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGTTTAGTTATTCAC	NA	False	NA	-22	True	AATAAA	-10	NA	122779659	122752854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766247_122779625
ENSMUSG00000028656.15_2	chr4	-	2550	13	FSM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	55	15	4	-15	multi-exon	FALSE	canonical	3	217	junction_12	208.332399997909	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGTTTAGTTATTCAC	NA	False	NA	-22	True	AATAAA	-10	NA	122779649	122752854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766247_122779606
ENSMUSG00000028656.15_3	chr4	-	2542	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106255.8	2737	13	180	15	0	-15	multi-exon	FALSE	canonical	3	275	junction_12	193.312139642945	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGTTTAGTTATTCAC	NA	False	NA	-22	True	AATAAA	-10	NA	122779657	122752854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
ENSMUSG00000028656.15_7	chr4	-	2554	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106257.10	2768	13	199	15	3	-15	multi-exon	FALSE	canonical	3	357	junction_12	172.387322297462	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGTTTAGTTATTCAC	NA	False	NA	-22	True	AATAAA	-10	NA	122779650	122752854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
ENSMUSG00000028656.15_8	chr4	-	2512	12	ISM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	13453	15	-7826	-15	3prime_fragment	FALSE	canonical	3	810	junction_4	73.2204866783982	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGTTTAGTTATTCAC	NA	False	NA	-22	True	AATAAA	-10	NA	122766251	122752854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124
ENSMUSG00000028657.15_0	chr4	+	2288	9	FSM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	5	88	1	-88	multi-exon	FALSE	canonical	3	268	junction_2	20.6579282601136	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTGGTATCATTTTCAG	NA	False	NA	15	True	AATAAA	-13	NA	122730039	122752783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
ENSMUSG00000028657.15_10	chr4	+	1344	1	ISM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	21405	88	21393	-88	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTGGTATCATTTTCAG	NA	False	NA	15	True	AATAAA	-13	NA	122751439	122752783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_122751400_122752800
ENSMUSG00000028657.15_8	chr4	+	1981	7	ISM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	8240	88	8228	-88	3prime_fragment	FALSE	canonical	3	279	junction_1	19.0036546192802	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTGGTATCATTTTCAG	NA	False	NA	15	True	AATAAA	-13	NA	122738274	122752783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
ENSMUSG00000028664.15_1	chr4	-	4033	1	ISM	ENSMUSG00000028664.15	ENSMUST00000105845.9	10902	16	184413	4	10077	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAGATTTGTGGACTC	NA	False	NA	NA	False	AATAAA	-11	NA	136378886	136374853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136374900_136378900
ENSMUSG00000028664.15_10	chr4	-	4140	16	FSM	ENSMUSG00000028664.15	ENSMUST00000059287.14	4804	16	-18	682	0	356	multi-exon	FALSE	canonical	1	3	junction_10	7.67390962214756	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCACATTTCTGGATTT	NA	False	NA	-8	True	AATACA	-17	NA	136563285	136381600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_136382742_136383223_136383380_136384713_136384908_136386245_136386396_136386873_136387090_136387962_136388211_136388704_136388828_136399753_136399819_136400573_136400683_136402678_136402845_136411230_136411356_136421045_136421382_136423309_136423466_136498266_136498952_136501890_136501956_136563080
ENSMUSG00000028664.15_12	chr4	-	4176	16	FSM	ENSMUSG00000028664.15	ENSMUST00000105846.9	3653	16	-167	-356	-22	356	multi-exon	FALSE	canonical	1	1	junction_8	7.94816540676736	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCACATTTCTGGATTT	NA	False	NA	-8	True	AATACA	-17	NA	136563321	136381600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_136382742_136383223_136383380_136384713_136384908_136386245_136386396_136386873_136387090_136387962_136388211_136388704_136388828_136399753_136399822_136400573_136400683_136402678_136402842_136411230_136411356_136421045_136421382_136423309_136423466_136498266_136498952_136501890_136501956_136563080
ENSMUSG00000028664.15_14	chr4	-	3052	13	ISM	ENSMUSG00000028664.15	ENSMUST00000105845.9	10902	16	139957	6758	-1991	349	3prime_fragment	FALSE	canonical	3	19	junction_7	4.98887651569859	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTTATATGCACATTTC	NA	False	NA	-15	True	AATACA	-10	NA	136423342	136381607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136382742_136383223_136383380_136384713_136384908_136386245_136386396_136386873_136387090_136387962_136388211_136388704_136388828_136399753_136399819_136400573_136400683_136402678_136402842_136411230_136411356_136421045_136421382_136423309
ENSMUSG00000028664.15_16	chr4	-	1843	6	ISM	ENSMUSG00000028664.15	ENSMUST00000105846.9	3653	16	-122	28994	-9	-22177	5prime_fragment	FALSE	canonical	3	20	junction_2	3.55527776692624	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAACAACAAAACTG	NA	False	NA	NA	False	GATAAA	-10	NA	136563276	136410950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136411356_136421045_136421382_136423309_136423466_136498266_136498952_136501890_136501956_136563080
ENSMUSG00000028664.15_2	chr4	-	4150	16	FSM	ENSMUSG00000028664.15	ENSMUST00000105845.9	10902	16	1	6751	1	356	multi-exon	FALSE	canonical	3	19	junction_7	4.97728172131469	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCACATTTCTGGATTT	NA	False	NA	-8	True	AATACA	-17	NA	136563298	136381600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_136382742_136383223_136383380_136384713_136384908_136386245_136386396_136386873_136387090_136387962_136388211_136388704_136388828_136399753_136399819_136400573_136400683_136402678_136402842_136411230_136411356_136421045_136421382_136423309_136423466_136498266_136498952_136501890_136501956_136563080
ENSMUSG00000028664.15_24	chr4	-	2932	8	ISM	ENSMUSG00000028664.15	ENSMUST00000059287.14	4804	16	163486	6	-10818	-6	3prime_fragment	FALSE	canonical	3	19	junction_7	5.11899224776255	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATGACCCCTGTACTC	NA	False	NA	NA	False	AATAAA	-11	NA	136399781	136380924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136382742_136383223_136383380_136384713_136384908_136386245_136386396_136386873_136387090_136387962_136388211_136388704_136388828_136399753
ENSMUSG00000028664.15_4	chr4	-	2616	6	ISM	ENSMUSG00000028664.15	ENSMUST00000059287.14	4804	16	175224	4	920	-4	3prime_fragment	FALSE	canonical	3	24	junction_5	3.07245829914744	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGACCCCTGTACTCTG	NA	False	NA	NA	False	AATAAA	-13	NA	136388043	136380922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136382742_136383223_136383380_136384713_136384908_136386245_136386396_136386873_136387090_136387962
ENSMUSG00000028664.15_6	chr4	-	2772	12	ISM	ENSMUSG00000028664.15	ENSMUST00000105845.9	10902	16	142178	6745	230	362	3prime_fragment	FALSE	canonical	3	19	junction_7	4.61760912698193	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTCTGGATTTTTTTAT	NA	False	NA	-2	True	AATACA	-23	NA	136421121	136381594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136382742_136383223_136383380_136384713_136384908_136386245_136386396_136386873_136387090_136387962_136388211_136388704_136388828_136399753_136399819_136400573_136400683_136402678_136402842_136411230_136411356_136421045
ENSMUSG00000028668.6_0	chr4	-	4578	11	FSM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	107	23	107	-23	multi-exon	FALSE	canonical	3	104	junction_6	17.5182761709022	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAGCAAAAAAATT	7811	False	NA	-24	True	AAAAAG	-16	NA	135748967	135730701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539_135738720_135740180_135740288_135741710_135741768_135748861
ENSMUSG00000028668.6_5	chr4	-	3504	8	ISM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	11159	23	11159	-23	3prime_fragment	FALSE	canonical	3	104	junction_6	19.4327726550079	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAGCAAAAAAATT	NA	False	NA	-24	True	AAAAAG	-16	NA	135737915	135730701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539
ENSMUSG00000028669.16_0	chr4	-	1502	6	FSM	ENSMUSG00000028669.16	ENSMUST00000105851.9	1700	6	52	146	52	-146	multi-exon	FALSE	canonical	3	496	junction_4	31.7893063780888	540	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGGTCTGTCTTTTCTTC	2167	False	NA	-5	True	AATAAA	-12	NA	135714523	135702916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135703808_135704459_135704569_135706107_135706213_135713251_135713330_135713702_135713747_135714248
ENSMUSG00000028670.15_1	chr4	-	1594	10	FSM	ENSMUSG00000028670.15	ENSMUST00000067567.5	1626	10	24	8	1	-8	multi-exon	FALSE	canonical	3	407	junction_1	24.7476149243608	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTCAGGGCTCCCTTAT	NA	False	NA	-19	True	ATTAAA	-12	NA	135699913	135695542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
ENSMUSG00000028670.15_12	chr4	-	1665	9	FSM	ENSMUSG00000028670.15	ENSMUST00000145350.2	1119	9	-14	-532	1	-8	multi-exon	FALSE	canonical	3	407	junction_1	24.7474746186353	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTCAGGGCTCCCTTAT	NA	False	NA	-19	True	ATTAAA	-12	NA	135699913	135695542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135696379_135696454_135696629_135696738_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
ENSMUSG00000028670.15_3	chr4	-	1662	9	NIC	ENSMUSG00000028670.15	novel	1626	10	NA	NA	-6	-8	intron_retention	TRUE	canonical	3	428	junction_2	20.3127884594902	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTCAGGGCTCCCTTAT	NA	False	NA	-19	True	ATTAAA	-12	NA	135699905	135695542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
ENSMUSG00000028671.17_0	chr4	+	1401	11	FSM	ENSMUSG00000028671.17	ENSMUST00000102541.10	1430	11	26	3	-4	-3	multi-exon	FALSE	canonical	3	107	junction_1	18.7712546197637	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGCAGATTCTCACAGAT	4588	False	NA	8	True	AATAAA	-16	NA	135691063	135695486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_135691100_135692644_135692768_135692876_135692993_135693313_135693428_135693680_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
ENSMUSG00000028671.17_11	chr4	+	1371	10	FSM	ENSMUSG00000028671.17	ENSMUST00000102540.2	1537	10	165	1	135	-1	multi-exon	FALSE	canonical	3	139	junction_8	10.2318794961967	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGATTCTCACAGATGG	6165	False	NA	10	True	AATAAA	-18	NA	135692640	135695488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_135692768_135692876_135692993_135693313_135693428_135693680_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
ENSMUSG00000028671.17_15	chr4	+	952	7	ISM	ENSMUSG00000028671.17	ENSMUST00000102540.2	1537	10	1265	3	811	-3	3prime_fragment	FALSE	canonical	3	139	junction_5	9.24511883223911	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGCAGATTCTCACAGAT	7265	False	NA	8	True	AATAAA	-16	NA	135693740	135695486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
ENSMUSG00000028672.14_1	chr4	+	1390	9	FSM	ENSMUSG00000028672.14	ENSMUST00000030432.8	1418	9	19	9	2	-9	multi-exon	FALSE	canonical	3	659	junction_3	79.965617611571	553	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATAACATTCAAACGTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	135673777	135689919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_135673852_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683047_135686033_135686098_135687287_135687477_135688093_135688220_135689419
ENSMUSG00000028673.11_1	chr4	+	1478	8	FSM	ENSMUSG00000028673.11	ENSMUST00000030434.5	2525	8	24	1023	24	-1	multi-exon	FALSE	canonical	3	268	junction_1	34.7786000351964	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGTGGTCAATCTCCCA	NA	False	NA	19	True	AATAAA	-19	NA	135648069	135666599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_135648462_135650277_135650413_135652859_135652998_135657209_135657316_135660209_135660411_135662000_135662192_135664233_135664334_135666384
ENSMUSG00000028673.11_2	chr4	+	3541	7	NIC	ENSMUSG00000028673.11	novel	2525	8	NA	NA	3	-1	intron_retention	FALSE	canonical	3	268	junction_1	37.1995370341562	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGTGGTCAATCTCCCA	NA	False	NA	19	True	AATAAA	-19	NA	135648048	135666599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_135648462_135650277_135650413_135652859_135652998_135657209_135657316_135660209_135660411_135662000_135664334_135666384
ENSMUSG00000028675.13_0	chr4	-	2678	1	NIC	ENSMUSG00000028675.13	novel	1919	3	NA	NA	-26	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACATTCTTTTTATGTAA	NA	False	NA	-3	True	AATAAA	-26	NA	135600907	135598229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_135598200_135600900
ENSMUSG00000028675.13_1	chr4	-	1875	3	FSM	ENSMUSG00000028675.13	ENSMUST00000030436.12	1919	3	28	16	28	-16	multi-exon	FALSE	canonical	3	336	junction_2	18.5	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTCCTCCCTAGTAC	NA	False	NA	-18	True	AATAAA	-11	NA	135601133	135598244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135599766_135600205_135600411_135600984
ENSMUSG00000028675.13_4	chr4	-	1665	2	FSM	ENSMUSG00000028675.13	ENSMUST00000180300.2	171	2	31	-1525	31	-8	multi-exon	FALSE	canonical	3	373	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCTAGTACATTCTTTT	NA	False	NA	-10	True	AATAAA	-19	NA	135600341	135598236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135599766_135600205
ENSMUSG00000028676.18_114	chr4	+	1325	1	ISM	ENSMUSG00000028676.18	ENSMUST00000105853.10	3058	6	8737	7	1189	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAATAATGATTAACTG	NA	False	NA	NA	False	AATAAA	-10	NA	135591794	135593119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135591800_135593100
ENSMUSG00000028676.18_13	chr4	+	5648	6	NIC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-3	-22	intron_retention	FALSE	canonical	3	381	junction_2	439.264567202956	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAACAAAATGAAGGA	4703	False	NA	NA	False	NA	NA	NA	135583439	135593104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_135583603_135585615_135585783_135586152_135589189_135590350_135590514_135590833_135590888_135591039
ENSMUSG00000028676.18_2	chr4	+	3086	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-7	-19	at_least_one_novel_splicesite	FALSE	canonical	3	216	junction_3	533.493960186576	252	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAATGAAGGAAAT	4699	False	NA	NA	False	NA	NA	NA	135583435	135593107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135590833_135590888_135591039
ENSMUSG00000028676.18_4	chr4	+	3359	6	NNC	ENSMUSG00000028676.18	novel	3754	6	NA	NA	-7	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	623.730198082472	317	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGCTTTAAAAAAAAAAATC	4699	False	NA	5	True	AATAAA	-10	NA	135583435	135597201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350_135590514_135590833_135590888_135594436
ENSMUSG00000028676.18_6	chr4	+	2657	6	NNC	ENSMUSG00000028676.18	novel	3055	6	NA	NA	-5	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	618.505101029894	242	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAATGAAGGAAAT	4701	False	NA	NA	False	NA	NA	NA	135583437	135593107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350_135590514_135590836_135590888_135591039
ENSMUSG00000028676.18_9	chr4	+	2662	6	NNC	ENSMUSG00000028676.18	novel	3058	6	NA	NA	-7	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	578.7306800231	746	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAATGAAGGAAAT	4699	False	NA	NA	False	NA	NA	NA	135583435	135593107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350_135590514_135590833_135590888_135591039
ENSMUSG00000028677.20_0	chr4	-	1949	11	NIC	ENSMUSG00000028677.20	novel	1949	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	343.341753942045	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACAAGCTGCTGTCTGT	9574	False	NA	NA	False	ATTAAA	-6	NA	117146639	117128668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117146395
ENSMUSG00000028677.20_1	chr4	-	1947	11	FSM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	4	-2	0	2	multi-exon	TRUE	canonical	0	0	junction_5	319.717437747771	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTGCTGTCTGTGT	9574	False	NA	NA	False	ATTAAA	-8	NA	117146639	117128666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117146399
ENSMUSG00000028677.20_3	chr4	-	1806	10	ISM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	278	-1	-55	1	3prime_fragment	FALSE	canonical	0	0	junction_5	318.755914977798	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAAGCTGCTGTCTGTG	9848	False	NA	NA	False	ATTAAA	-7	NA	117146365	117128667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222
ENSMUSG00000028677.20_6	chr4	-	1874	11	NIC	ENSMUSG00000028677.20	novel	1949	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	375.814528723944	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACAAGCTGCTGTCTGT	9571	False	NA	NA	False	ATTAAA	-6	NA	117146642	117128668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117146395
ENSMUSG00000028677.20_7	chr4	-	3088	15	NIC	ENSMUSG00000028677.20	novel	3029	15	NA	NA	12	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	471.87085313761	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTGCTGTCTGTGT	NA	False	NA	NA	False	ATTAAA	-8	NA	117354237	117128666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117153328_117153431_117156741_117156788_117164742_117164876_117346785_117347528_117353879
ENSMUSG00000028677.20_9	chr4	-	1867	11	NIC	ENSMUSG00000028677.20	novel	1949	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	357.390878451032	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACAAGCTGCTGTCTGT	9574	False	NA	NA	False	ATTAAA	-6	NA	117146639	117128668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117146399
ENSMUSG00000028678.14_0	chr4	-	2750	20	FSM	ENSMUSG00000028678.14	ENSMUST00000065896.9	2842	20	67	25	20	-25	multi-exon	FALSE	canonical	3	415	junction_14	29.7897526488705	803	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAATAAAGAAAGAAGAAA	NA	False	NA	63	True	AAGAAA	-41	NA	117039769	117016860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
ENSMUSG00000028680.15_10	chr4	-	2525	14	FSM	ENSMUSG00000028680.15	ENSMUST00000126135.2	2512	14	-15	2	4	0	multi-exon	TRUE	canonical	3	135	junction_9	17.6963206151338	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTGAAGGCCTTATCATT	3223	False	NA	0	True	AATAAA	-13	NA	116991156	116985853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116986376_116986482_116986597_116987156_116987603_116987704_116987789_116987920_116988015_116988258_116988351_116988569_116988697_116988806_116989006_116989097_116989194_116989923_116990012_116990101_116990232_116990385_116990503_116990591_116990700_116990848
ENSMUSG00000028680.15_2	chr4	-	2373	15	FSM	ENSMUSG00000028680.15	ENSMUST00000076859.12	2378	15	1	4	1	-2	multi-exon	FALSE	canonical	3	135	junction_10	17.1138146846699	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTTGAAGGCCTTATCA	3220	False	NA	-2	True	AATAAA	-11	NA	116991159	116985855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116986376_116986482_116986597_116987156_116987287_116987439_116987603_116987704_116987789_116987920_116988015_116988258_116988351_116988569_116988697_116988806_116989006_116989097_116989194_116989923_116990012_116990101_116990232_116990385_116990503_116990591_116990700_116990848
ENSMUSG00000028680.15_8	chr4	-	2242	14	NIC	ENSMUSG00000028680.15	novel	2378	15	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_11	45.0459331646549	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTGAAGGCCTTATCATT	3223	False	NA	0	True	AATAAA	-13	NA	116991156	116985853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_116986376_116986482_116986597_116987156_116987287_116987439_116987603_116987704_116987789_116987920_116988015_116988258_116988351_116988569_116988697_116988806_116989006_116989097_116989194_116989923_116990012_116990385_116990503_116990591_116990700_116990848
ENSMUSG00000028681.12_0	chr4	+	4414	22	FSM	ENSMUSG00000028681.12	ENSMUST00000030443.12	4382	22	-35	3	-35	-3	multi-exon	FALSE	canonical	3	5	junction_3	13.5888776715328	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTCAGATGGCTGGAGT	NA	False	NA	-1	True	AATATA	-13	NA	116953236	116972577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116953625_116954043_116954237_116961929_116962120_116962226_116962297_116962430_116962523_116963131_116963328_116965095_116965218_116965351_116965500_116965579_116965712_116965800_116965957_116966052_116966146_116966489_116966616_116966708_116966828_116966933_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
ENSMUSG00000028681.12_10	chr4	+	2510	10	ISM	ENSMUSG00000028681.12	ENSMUST00000144620.8	4356	22	13410	7	-729	-7	3prime_fragment	FALSE	canonical	3	29	junction_6	5.35412613473634	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCATCTCAGATGGCTG	NA	False	NA	-5	True	AATATA	-9	NA	116966702	116972573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116966828_116966933_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
ENSMUSG00000028681.12_11	chr4	+	2609	9	NIC	ENSMUSG00000028681.12	novel	4382	22	NA	NA	-713	-1	intron_retention	FALSE	canonical	3	29	junction_5	5.31507290636732	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAGATGGCTGGAGTTT	NA	False	NA	1	True	AATATA	-15	NA	116966718	116972579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_116966828_116966933_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
ENSMUSG00000028681.12_12	chr4	+	2167	9	ISM	ENSMUSG00000028681.12	ENSMUST00000144620.8	4356	22	13859	7	-280	-7	3prime_fragment	FALSE	canonical	3	29	junction_5	5.65685424949238	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCATCTCAGATGGCTG	NA	False	NA	-5	True	AATATA	-9	NA	116967151	116972573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
ENSMUSG00000028681.12_13	chr4	+	1703	7	ISM	ENSMUSG00000028681.12	ENSMUST00000144620.8	4356	22	14521	9	382	-9	3prime_fragment	FALSE	canonical	3	29	junction_3	5.89962334014262	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACTCATCTCAGATGGC	NA	False	NA	-7	True	AATATA	-7	NA	116967813	116972571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
ENSMUSG00000028681.12_15	chr4	+	1291	5	ISM	ENSMUSG00000028681.12	ENSMUST00000144620.8	4356	22	15143	1	1004	-1	3prime_fragment	FALSE	canonical	3	29	junction_1	6.29980158417708	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAGATGGCTGGAGTTT	NA	False	NA	1	True	AATATA	-15	NA	116968435	116972579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
ENSMUSG00000028681.12_16	chr4	+	4492	21	NIC	ENSMUSG00000028681.12	novel	4382	22	NA	NA	-37	-7	intron_retention	FALSE	canonical	3	5	junction_3	13.7436348903774	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCATCTCAGATGGCTG	NA	False	NA	-5	True	AATATA	-9	NA	116953234	116972573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_116953625_116954043_116954237_116961929_116962120_116962226_116962297_116962430_116962523_116963131_116963328_116965095_116965218_116965351_116965712_116965800_116965957_116966052_116966146_116966489_116966616_116966708_116966828_116966933_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
ENSMUSG00000028681.12_5	chr4	+	3699	19	ISM	ENSMUSG00000028681.12	ENSMUST00000030443.12	4382	22	8891	11	46	-11	3prime_fragment	FALSE	canonical	3	7	junction_1	12.6940493495531	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAACTCATCTCAGATG	NA	False	NA	-9	True	AATATA	-5	NA	116962162	116972569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116962297_116962430_116962523_116963131_116963328_116965095_116965218_116965351_116965500_116965579_116965712_116965800_116965957_116966052_116966146_116966489_116966616_116966708_116966828_116966933_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
ENSMUSG00000028681.12_6	chr4	+	3081	15	ISM	ENSMUSG00000028681.12	ENSMUST00000144620.8	4356	22	12137	7	-2002	-7	3prime_fragment	FALSE	canonical	3	16	junction_1	9.83875095772646	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCATCTCAGATGGCTG	NA	False	NA	-5	True	AATATA	-9	NA	116965429	116972573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116965500_116965579_116965712_116965800_116965957_116966052_116966146_116966489_116966616_116966708_116966828_116966933_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
ENSMUSG00000028681.12_9	chr4	+	2778	11	ISM	ENSMUSG00000028681.12	ENSMUST00000144620.8	4356	22	13045	11	-1094	-11	3prime_fragment	FALSE	canonical	3	21	junction_1	7.56042326857432	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAACTCATCTCAGATG	NA	False	NA	-9	True	AATATA	-5	NA	116966337	116972569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116966616_116966708_116966828_116966933_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
ENSMUSG00000028683.15_0	chr4	+	1525	12	FSM	ENSMUSG00000028683.15	ENSMUST00000106448.9	1555	12	26	4	20	0	multi-exon	TRUE	canonical	3	567	junction_7	49.9305302519377	505	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGTGTGGCTCAGTGGT	NA	False	NA	16	True	AATAAA	-16	NA	116876624	116944045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
ENSMUSG00000028684.15_0	chr4	-	1196	10	FSM	ENSMUSG00000028684.15	ENSMUST00000030446.15	1489	10	40	253	7	-1	multi-exon	FALSE	canonical	3	335	junction_9	15.6331398550769	220	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTAGCATGTTCTTTTGT	NA	False	NA	-20	True	AATAAA	-15	NA	116851570	116847414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
ENSMUSG00000028687.18_12	chr4	+	1928	16	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	57	junction_1	44.8184485824011	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCTTTGGAGAACTTTCT	NA	False	NA	25	True	AATAAA	-15	NA	116664940	116676627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675480_116676451
ENSMUSG00000028687.18_17	chr4	+	1558	15	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	5	-2	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	52.7655577212319	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCTTTGGAGAACTTTC	NA	False	NA	24	True	AATAAA	-14	NA	116664939	116676626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
ENSMUSG00000028687.18_3	chr4	+	1633	16	FSM	ENSMUSG00000028687.18	ENSMUST00000102699.8	1654	16	20	1	5	-1	multi-exon	FALSE	canonical	3	103	junction_1	29.5893374188894	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCTTTGGAGAACTTTCT	NA	False	NA	25	True	AATAAA	-15	NA	116664939	116676627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
ENSMUSG00000028687.18_5	chr4	+	1726	17	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	43.6183286446191	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCTTTGGAGAACTTTCT	NA	False	NA	25	True	AATAAA	-15	NA	116664939	116676627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
ENSMUSG00000028688.14_1	chr4	-	2022	8	FSM	ENSMUSG00000028688.14	ENSMUST00000030451.10	2090	8	61	7	27	3	multi-exon	FALSE	canonical	3	103	junction_2	11.8252583351856	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCATTCTTTGGTTATT	2000	False	NA	-7	True	TTTAAA	-35	NA	116664776	116661205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
ENSMUSG00000028688.14_10	chr4	-	1320	9	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	20	-34	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	38.7021882456277	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATCAACAGAAA	1993	False	NA	-44	True	NA	NA	NA	116664783	116661242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_116661334_116662005_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
ENSMUSG00000028688.14_2	chr4	-	2071	8	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	29	-1	intron_retention	FALSE	canonical	2	10	junction_7	40.0209129004794	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTTGGTTATTTCTTAT	2002	False	NA	-1	True	TTTAAA	-41	NA	116664774	116661199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116664002_116664664
ENSMUSG00000028688.14_8	chr4	-	1988	8	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	258	3	intron_retention	FALSE	canonical	2	4	junction_7	42.0500188065672	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCATTCTTTGGTTATT	2289	False	NA	-7	True	TTTAAA	-35	NA	116664487	116661205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664409
ENSMUSG00000028689.15_10	chr4	+	1737	10	NIC	ENSMUSG00000028689.15	novel	1213	10	NA	NA	-78	0	intron_retention	FALSE	canonical	3	19	junction_2	21.1980665319118	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTCTCTGTAAATCTT	5478	False	NA	15	True	AATAAA	-19	NA	116565627	116572300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568482_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ENSMUSG00000028689.15_18	chr4	+	1440	9	NIC	ENSMUSG00000028689.15	novel	1237	10	NA	NA	-12	2	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	24.1596254110034	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTGTTCTCTGTAAATC	5739	False	NA	13	True	AATAAA	-17	NA	116565888	116572298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_116566292_116566634_116566817_116566920_116567003_116567297_116567482_116568482_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ENSMUSG00000028689.15_24	chr4	+	147	1	ISM	ENSMUSG00000028689.15	ENSMUST00000126197.2	1335	4	1718	14	1412	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATGTGCTTCAC	7389	False	NA	NA	False	NA	NA	NA	116567538	116567685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116567500_116567700
ENSMUSG00000028689.15_25	chr4	+	1376	7	NIC	ENSMUSG00000028689.15	novel	1213	10	NA	NA	-1	0	intron_retention	FALSE	canonical	3	7	junction_5	28.2945813422523	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5642	False	NA	11	True	AATAAA	-15	NA	116565791	116572296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116571212_116571347_116572036
ENSMUSG00000028689.15_26	chr4	+	1544	10	NIC	ENSMUSG00000028689.15	novel	1213	10	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	24.2766971536772	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTCTCTGTAAATCTT	5718	False	NA	15	True	AATAAA	-19	NA	116565867	116572300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571212_116571347_116572036
ENSMUSG00000028689.15_6	chr4	+	1483	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106464.3	1213	10	-274	4	22	0	multi-exon	FALSE	canonical	3	19	junction_2	20.3239201040316	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5703	False	NA	11	True	AATAAA	-15	NA	116565852	116572296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ENSMUSG00000028690.5_2	chr4	-	3045	6	NNC	ENSMUSG00000028690.5	novel	2106	4	NA	NA	-43	1445	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	92.7525740882699	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTCTTATTGGCCAAG	NA	False	NA	NA	False	NA	NA	NA	116565528	116558030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_116559060_116559388_116559496_116559597_116561065_116561703_116561857_116563077_116563273_116565434
ENSMUSG00000028690.5_4	chr4	-	1869	4	FSM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	75	162	-43	-162	multi-exon	FALSE	canonical	3	184	junction_2	7.07106781186548	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCACCAACTTTGTTTG	NA	False	NA	-9	True	AATACA	-24	NA	116565528	116559637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116561065_116561703_116561857_116563077_116563273_116565434
ENSMUSG00000028691.13_1	chr4	+	924	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	59	1311	4	239	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	8086	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTTGGTGATTCATTCT	NA	False	NA	27	True	ATTAAA	-12	NA	116542799	116556708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
ENSMUSG00000028692.15_0	chr4	-	1348	9	FSM	ENSMUSG00000028692.15	ENSMUST00000030455.15	1420	9	70	2	70	-1	multi-exon	FALSE	canonical	3	1447	junction_3	104.145331148352	1001	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACGTTGTGTGCCTGACT	NA	False	NA	-3	True	AATAAA	-13	NA	116508807	116493708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
ENSMUSG00000028693.16_0	chr4	-	2530	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	446	4	-2	-4	3prime_fragment	FALSE	canonical	3	774	junction_12	215.450595691155	1324	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTGAGGCTTTGATGG	NA	False	NA	-11	True	AATAAA	-11	NA	116484692	116458809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ENSMUSG00000028693.16_1	chr4	-	3126	14	NIC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	774	junction_11	207.002729879378	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAGGCTTTGATGGCTT	NA	False	NA	-8	True	AATAAA	-14	NA	116484691	116458806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ENSMUSG00000028693.16_2	chr4	-	2673	9	ISM	ENSMUSG00000028693.16	ENSMUST00000081182.5	1461	13	20086	1	-1144	-1	3prime_fragment	FALSE	canonical	3	1005	junction_7	144.696881445317	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAGGCTTTGATGGCTT	NA	False	NA	-8	True	AATAAA	-14	NA	116464589	116458806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880
ENSMUSG00000028693.16_3	chr4	-	1649	10	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	16932	3	-4761	-3	3prime_fragment	FALSE	canonical	3	898	junction_9	170.844597641277	229	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGAGGCTTTGATGGC	NA	False	NA	-10	True	AATAAA	-12	NA	116468206	116458808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599
ENSMUSG00000028693.16_5	chr4	-	2089	11	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	15897	4	-5796	-4	3prime_fragment	TRUE	canonical	3	776	junction_10	203.990293886744	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTGAGGCTTTGATGG	NA	False	NA	-11	True	AATAAA	-11	NA	116469241	116458809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168
ENSMUSG00000028696.13_0	chr4	+	4622	9	FSM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	69	-2573	66	2565	multi-exon	FALSE	canonical	3	65	junction_7	9.43977621556783	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGATCTTTCTCCAAAATG	NA	False	NA	8	True	NA	NA	NA	116364814	116398005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996
ENSMUSG00000028696.13_1	chr4	+	2256	10	NNC	ENSMUSG00000028696.13	novel	2118	9	NA	NA	69	3165	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_9	22.8958996814325	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGAATTTCTTGAGGG	NA	False	NA	NA	False	AATAAA	-10	NA	116364817	116398605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996_116395118_116398080
ENSMUSG00000028696.13_4	chr4	+	1315	6	ISM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	75	8375	72	-8375	5prime_fragment	FALSE	canonical	3	66	junction_1	8.66256313108309	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTGTAGACATGTTCAT	NA	False	NA	NA	False	ATTAAA	-14	NA	116364820	116387057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867
ENSMUSG00000028696.13_8	chr4	+	4458	8	ISM	ENSMUSG00000028696.13	ENSMUST00000030461.5	2115	9	2969	-2433	2969	2433	3prime_fragment	FALSE	canonical	3	65	junction_6	9.03507902905251	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTTTTCTTTGTATTA	NA	False	NA	NA	False	AATAAA	-10	NA	116367717	116397873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996
ENSMUSG00000028698.14_0	chr4	+	5303	10	FSM	ENSMUSG00000028698.14	ENSMUST00000030464.14	5257	10	-52	6	-9	-6	multi-exon	FALSE	canonical	2	5	junction_9	3.32591767713239	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAAGCATTTTTTGGTTT	3239	False	NA	NA	False	AATAAA	-9	NA	116078805	116160247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116079611_116113364_116113474_116116741_116116841_116127984_116128166_116129935_116130062_116143252_116143396_116144019_116144197_116148871_116148947_116149293_116149465_116156830
ENSMUSG00000028698.14_5	chr4	+	2383	1	ISM	ENSMUSG00000028698.14	ENSMUST00000030464.14	5257	10	79004	9	78969	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGAAGCATTTTTTGG	6398	False	NA	NA	False	AATAAA	-6	NA	116157861	116160244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116157900_116160200
ENSMUSG00000028699.10_0	chr4	-	1238	8	FSM	ENSMUSG00000028699.10	ENSMUST00000030465.10	1985	8	9	738	9	701	multi-exon	FALSE	canonical	0	0	junction_3	1.48461497791618	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGACCTGTATATGCTTG	NA	False	NA	NA	False	TATAAA	-18	NA	116024788	116019803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116020233_116020503_116020588_116020824_116020978_116021058_116021158_116021263_116021339_116021515_116021723_116024204_116024270_116024662
ENSMUSG00000028700.15_1	chr4	+	2713	22	FSM	ENSMUSG00000028700.15	ENSMUST00000106498.8	2719	22	-6	12	-6	-12	multi-exon	TRUE	canonical	3	321	junction_9	36.7984644262092	628	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAAACCTCTGGGGGTG	NA	False	NA	-6	True	ATTAAA	-4	NA	116007708	116017029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116007815_116008261_116008441_116009016_116009132_116009273_116009393_116009905_116009972_116010059_116010174_116010747_116010866_116011038_116011138_116011288_116011417_116011738_116011810_116012027_116012104_116012259_116012344_116012425_116012468_116012656_116012716_116012925_116012999_116013082_116013212_116013292_116013419_116015089_116015155_116015348_116015394_116015619_116015756_116016179_116016290_116016376
ENSMUSG00000028701.5_0	chr4	-	2155	1	ISM	ENSMUSG00000028701.5	ENSMUST00000030469.5	5742	2	10043	6	10043	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGACAAATGCTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	115991763	115989608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_115989600_115991800
ENSMUSG00000028701.5_1	chr4	-	5683	2	FSM	ENSMUSG00000028701.5	ENSMUST00000030469.5	5742	2	50	9	50	-9	multi-exon	FALSE	canonical	3	8	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAAGTGACAAATGCTTAA	NA	False	NA	NA	False	NA	NA	NA	116001756	115989611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_115995032_116001493
ENSMUSG00000028702.16_10	chr4	-	2719	19	FSM	ENSMUSG00000028702.16	ENSMUST00000102705.10	2780	19	15	46	-11	13	multi-exon	FALSE	canonical	3	169	junction_18	87.8901706606913	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGACTGAGGCCTGGGA	NA	False	NA	-42	True	NA	NA	NA	115980867	115954158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
ENSMUSG00000028702.16_15	chr4	-	2887	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	-11	13	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGACTGAGGCCTGGGA	NA	False	NA	-42	True	NA	NA	NA	115980867	115954158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980675
ENSMUSG00000028702.16_3	chr4	-	3049	18	FSM	ENSMUSG00000028702.16	ENSMUST00000102704.4	3025	18	-11	-13	-11	13	multi-exon	FALSE	canonical	3	379	junction_11	50.1315225199974	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGACTGAGGCCTGGGA	NA	False	NA	-42	True	NA	NA	NA	115980867	115954158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258
ENSMUSG00000028702.16_4	chr4	-	1934	1	ISM	ENSMUSG00000028702.16	ENSMUST00000139147.2	4571	4	3858	3	3858	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGACTCCTCAGGGGTTG	NA	False	NA	-15	True	AATAAA	-17	NA	115953397	115951463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_115951500_115953400
ENSMUSG00000028702.16_7	chr4	-	2697	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	-11	13	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	210	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGACTGAGGCCTGGGA	NA	False	NA	-42	True	NA	NA	NA	115980867	115954158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980697
ENSMUSG00000028702.16_8	chr4	-	2952	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-11	13	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_18	118.034272591366	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGACTGAGGCCTGGGA	NA	False	NA	-42	True	NA	NA	NA	115980867	115954158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980610
ENSMUSG00000028703.15_0	chr4	+	2879	10	FSM	ENSMUSG00000028703.15	ENSMUST00000030471.9	3065	10	178	8	-16	-8	multi-exon	FALSE	canonical	3	193	junction_3	24.5573151707401	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCATGCAGCCCTTCT	NA	False	NA	1	True	AATAAA	-9	NA	115932643	115954232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_115932805_115936585_115936673_115937745_115937817_115945643_115946767_115950068_115950330_115952073_115952239_115952329_115952429_115952988_115953112_115953339_115953416_115953519
ENSMUSG00000028703.15_13	chr4	+	1866	7	ISM	ENSMUSG00000028703.15	ENSMUST00000030471.9	3065	10	13872	8	-341	-8	3prime_fragment	FALSE	canonical	3	194	junction_2	13.8172597379751	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCATGCAGCCCTTCT	NA	False	NA	1	True	AATAAA	-9	NA	115946337	115954232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_115946767_115950068_115950330_115952073_115952239_115952329_115952429_115952988_115953112_115953339_115953416_115953519
ENSMUSG00000028703.15_5	chr4	+	2022	4	ISM	ENSMUSG00000028703.15	ENSMUST00000030471.9	3065	10	186	6886	-8	1559	5prime_fragment	FALSE	canonical	3	193	junction_3	29.3295452099452	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGCCTACTTCTGAGTT	NA	False	NA	NA	False	CATAAA	-8	NA	115932651	115947354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_115932805_115936585_115936673_115937745_115937817_115945643
ENSMUSG00000028706.15_0	chr4	-	2206	6	FSM	ENSMUSG00000028706.15	ENSMUST00000030475.3	2439	6	67	166	67	-3	multi-exon	FALSE	canonical	3	114	junction_2	15.8417170786503	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGTGTGTGTGCGTGCC	NA	False	NA	-9	True	AGTAAA	-14	NA	115911006	115890204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_115891509_115892948_115893074_115897265_115897427_115901881_115902037_115905526_115905862_115910880
ENSMUSG00000028707.16_1	chr4	-	4052	5	FSM	ENSMUSG00000028707.16	ENSMUST00000124071.9	4017	5	-41	6	-41	-5	multi-exon	FALSE	canonical	1	1	junction_3	0.707106781186548	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGCCCTTGATCCATC	NA	False	NA	NA	False	AATAAA	-13	NA	115797164	115772321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_115775603_115777170_115777514_115777729_115777909_115780845_115781012_115797081
ENSMUSG00000028707.16_2	chr4	-	2265	1	ISM	ENSMUSG00000028707.16	ENSMUST00000064806.13	5799	4	8252	3	8252	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCTTGATCCATCTTC	6535	False	NA	NA	False	AATAAA	-16	NA	115774583	115772318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_115772300_115774600
ENSMUSG00000028707.16_3	chr4	-	4046	5	FSM	ENSMUSG00000028707.16	ENSMUST00000084338.7	4031	5	-17	2	-17	-2	multi-exon	FALSE	non_canonical	0	0	junction_3	1.08972473588517	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCTTGATCCATCTTC	NA	False	NA	NA	False	AATAAA	-16	NA	115797140	115772318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_115775603_115777170_115777514_115777729_115777924_115780845_115781012_115797081
ENSMUSG00000028708.17_1	chr4	+	2509	13	FSM	ENSMUSG00000028708.17	ENSMUST00000019677.12	2543	13	32	2	-3	-2	multi-exon	FALSE	canonical	3	99	junction_1	27.9607860325055	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	8	True	AATAAA	-14	NA	115696426	115736445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
ENSMUSG00000028708.17_15	chr4	+	2556	14	FSM	ENSMUSG00000028708.17	ENSMUST00000106513.10	2552	14	-6	2	4	-2	multi-exon	FALSE	canonical	3	11	junction_1	55.5404857930697	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	8	True	AATAAA	-14	NA	115696423	115736445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_115696479_115702818_115702863_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
ENSMUSG00000028708.17_23	chr4	+	2369	13	NIC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	47.2622705995197	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	8	True	AATAAA	-14	NA	115696427	115736445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731955_115732012_115732577_115732743_115733777_115733822_115735146
ENSMUSG00000028708.17_29	chr4	+	3826	12	ISM	ENSMUSG00000028708.17	ENSMUST00000019677.12	2543	13	33	9	-2	-9	intron_retention	FALSE	canonical	3	99	junction_1	25.6792034067123	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTCTGCCTGTGGCAGC	NA	False	NA	1	True	AATAAA	-7	NA	115696427	115736438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777
ENSMUSG00000028708.17_50	chr4	+	2452	12	ISM	ENSMUSG00000028708.17	ENSMUST00000106513.10	2552	14	8985	9	-8814	-9	3prime_fragment	FALSE	canonical	3	106	junction_11	24.3565118484049	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTCTGCCTGTGGCAGC	NA	False	NA	1	True	AATAAA	-7	NA	115705414	115736438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
ENSMUSG00000028708.17_62	chr4	+	2214	1	NIC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	2264	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	8	True	AATAAA	-14	NA	115734231	115736445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_115734200_115736400
ENSMUSG00000028708.17_7	chr4	+	2478	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	0	-2	at_least_one_novel_splicesite	TRUE	canonical	3	26	junction_1	42.5606593255112	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	8	True	AATAAA	-14	NA	115696417	115736445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_115696439_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
ENSMUSG00000028709.4_0	chr4	+	2883	4	FSM	ENSMUSG00000028709.4	ENSMUST00000030477.4	2884	4	-13	14	-13	-14	multi-exon	FALSE	canonical	3	40	junction_1	9.42809041582063	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAACTAAAGCAACCACTG	NA	False	NA	NA	False	AATAAA	-5	NA	115685275	115693368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_115685439_115688419_115688887_115690829_115691033_115691318
ENSMUSG00000028709.4_1	chr4	+	4823	3	NIC	ENSMUSG00000028709.4	novel	2884	4	NA	NA	-3	-7	intron_retention	FALSE	canonical	3	40	junction_1	10	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCAACCACTGGTGGGAA	NA	False	NA	NA	False	AATAAA	-12	NA	115685285	115693375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_115685439_115688419_115691033_115691318
ENSMUSG00000028709.4_11	chr4	+	2700	3	ISM	ENSMUSG00000028709.4	ENSMUST00000030477.4	2884	4	3139	26	2573	-26	3prime_fragment	FALSE	canonical	3	40	junction_1	10	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAGATACAAACTA	NA	False	NA	NA	False	AAGAAA	-20	NA	115688427	115693356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_115688887_115690829_115691033_115691318
ENSMUSG00000028709.4_6	chr4	+	2282	3	NNC	ENSMUSG00000028709.4	novel	2884	4	NA	NA	3639	-14	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	29	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAACTAAAGCAACCACTG	NA	False	NA	NA	False	AATAAA	-5	NA	115689493	115693368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_115689523_115690829_115691033_115691318
ENSMUSG00000028709.4_8	chr4	+	3541	2	ISM	ENSMUSG00000028709.4	ENSMUST00000030477.4	2884	4	4253	14	3687	-14	3prime_fragment	FALSE	canonical	3	60	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAACTAAAGCAACCACTG	NA	False	NA	NA	False	AATAAA	-5	NA	115689541	115693368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_115691033_115691318
ENSMUSG00000028709.4_9	chr4	+	1567	1	ISM	ENSMUSG00000028709.4	ENSMUST00000030477.4	2884	4	6501	26	5935	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAGATACAAACTA	NA	False	NA	NA	False	AAGAAA	-20	NA	115691789	115693356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_115691800_115693400
ENSMUSG00000028710.19_0	chr4	+	1734	9	FSM	ENSMUSG00000028710.19	ENSMUST00000239030.2	2160	9	29	397	29	46	multi-exon	FALSE	canonical	3	354	junction_5	26.518566609076	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATCAATCTAGATTTGCA	NA	False	NA	-2	True	AATAAA	-14	NA	115642209	115669114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_115642502_115645458_115645568_115647777_115647829_115648419_115648483_115652600_115652652_115653951_115654000_115655162_115655259_115657514_115657623_115668198
ENSMUSG00000028710.19_16	chr4	+	1513	1	NIC	ENSMUSG00000028710.19	novel	2655	10	NA	NA	12399	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACTCTTA	NA	False	NA	NA	False	NA	NA	NA	115669979	115671492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_115670000_115671500
ENSMUSG00000028716.16_0	chr4	+	935	4	FSM	ENSMUSG00000028716.16	ENSMUST00000030488.3	1119	4	147	37	147	-2	multi-exon	FALSE	canonical	2	4	junction_3	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGAGACTCTGACCCAGC	NA	False	NA	NA	False	AATAAA	-19	NA	114946066	114951059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_114946410_114948338_114948448_114950117_114950214_114950672
ENSMUSG00000028718.17_0	chr4	+	5255	17	FSM	ENSMUSG00000028718.17	ENSMUST00000030490.13	5285	17	25	5	2	-5	multi-exon	FALSE	canonical	3	47	junction_15	11.7923107892389	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTGAAAAAAACTGACTTC	NA	False	NA	NA	False	ATTAAA	-12	NA	114857380	114900388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_114857545_114860044_114860130_114862069_114862178_114863878_114863992_114864332_114864521_114866467_114866716_114867260_114867345_114868990_114869078_114871270_114871422_114873368_114873485_114878671_114878787_114880678_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264_114896516_114898370
ENSMUSG00000028718.17_10	chr4	+	5259	17	NNC	ENSMUSG00000028718.17	novel	5368	18	NA	NA	0	-7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	18.4373940674923	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAACTGAAAAAAACTGACT	NA	False	NA	NA	False	ATTAAA	-10	NA	114857378	114900386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_114857545_114860044_114860130_114862069_114862178_114863878_114863992_114864332_114864521_114866467_114866716_114867260_114867345_114868990_114869082_114871270_114871422_114873368_114873485_114878671_114878787_114880678_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264_114896516_114898370
ENSMUSG00000028718.17_20	chr4	+	3227	6	ISM	ENSMUSG00000028718.17	ENSMUST00000141933.8	5368	18	23872	2	7870	-2	3prime_fragment	FALSE	canonical	3	47	junction_4	9.08625335328044	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAAAACTGACTTCTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	114881250	114900391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264_114896516_114898370
ENSMUSG00000028718.17_24	chr4	+	1699	1	ISM	ENSMUSG00000028718.17	ENSMUST00000030490.13	5285	17	41339	0	25314	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAACTGACTTCTCTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	114898694	114900393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_114898700_114900400
ENSMUSG00000028718.17_5	chr4	+	5005	16	NIC	ENSMUSG00000028718.17	novel	5285	17	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	19.0251295805194	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAACTGAAAAAAACTGACT	NA	False	NA	NA	False	ATTAAA	-10	NA	114857380	114900386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_114857545_114860044_114860130_114862069_114862178_114863878_114863992_114864332_114864521_114867260_114867345_114868990_114869078_114871270_114871422_114873368_114873485_114878671_114878787_114880678_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264_114896516_114898370
ENSMUSG00000028719.9_0	chr4	-	1823	6	FSM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	9	1338	9	-1338	multi-exon	FALSE	canonical	3	519	junction_1	39.0302446828098	550	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGCTTGCTTTTTCAAT	NA	False	NA	-41	True	AATAAA	-26	NA	114844429	114817870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414_114826562_114844162
ENSMUSG00000028729.16_1	chr4	+	1108	9	FSM	ENSMUSG00000028729.16	ENSMUST00000030501.15	2960	9	51	1801	0	357	multi-exon	FALSE	canonical	3	2261	junction_5	110.190105612981	1207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGATACTCTTGGGTT	NA	False	NA	13	True	AATAAA	-13	NA	118478046	118483172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
ENSMUSG00000028737.16_0	chr4	+	3140	15	FSM	ENSMUSG00000028737.16	ENSMUST00000039818.10	3382	15	233	9	-10	-6	multi-exon	FALSE	canonical	3	190	junction_3	22.7807876447301	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACTTATATTTTGATC	NA	False	NA	17	True	NA	NA	NA	139350409	139376992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139367998_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
ENSMUSG00000028737.16_27	chr4	+	2295	6	ISM	ENSMUSG00000028737.16	ENSMUST00000146309.8	4142	15	19051	6	18836	-6	intron_retention	FALSE	canonical	3	214	junction_5	20.5659913449364	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACTTATATTTTGATC	5648	False	NA	17	True	NA	NA	NA	139369255	139376992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
ENSMUSG00000028737.16_32	chr4	+	974	1	ISM	ENSMUSG00000028737.16	ENSMUST00000039818.10	3382	15	25842	9	25599	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACTTATATTTTGATC	191	False	NA	17	True	NA	NA	NA	139376018	139376992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139376000_139377000
ENSMUSG00000028741.14_2	chr4	-	970	8	FSM	ENSMUSG00000028741.14	ENSMUST00000102503.10	1221	8	240	11	-25	-1	multi-exon	FALSE	canonical	3	786	junction_5	119.708489460771	512	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGACTCTTTCTTTTTTT	5936	False	NA	-13	True	AATAAA	-33	NA	139079647	139074756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
ENSMUSG00000028743.8_0	chr4	+	1274	7	FSM	ENSMUSG00000028743.8	ENSMUST00000073787.7	1288	7	7	7	7	-7	multi-exon	FALSE	canonical	3	253	junction_5	35.9787746070127	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCAGACCGTCTCCTCT	NA	False	NA	22	True	AATAAA	-33	NA	139038061	139045730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_139038388_139041414_139041603_139041777_139041883_139044020_139044118_139044244_139044345_139044880_139045011_139045402
ENSMUSG00000028744.16_0	chr4	-	1493	9	FSM	ENSMUSG00000028744.16	ENSMUST00000053862.12	1532	9	36	3	6	-1	multi-exon	FALSE	canonical	3	103	junction_8	18.155147341732	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGGGCCTGTTTCTGCTG	NA	False	NA	-6	True	AGTAAA	-12	NA	139037983	139025841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139034002_139035039_139035162_139037939
ENSMUSG00000028744.16_11	chr4	-	3330	7	NIC	ENSMUSG00000028744.16	novel	2756	8	NA	NA	12	-1	intron_retention	FALSE	canonical	3	103	junction_6	19.9784606236038	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGGGCCTGTTTCTGCTG	NA	False	NA	-6	True	AGTAAA	-12	NA	139037964	139025841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139034002_139035039_139035162_139037939
ENSMUSG00000028745.19_2	chr4	+	1574	9	FSM	ENSMUSG00000028745.19	ENSMUST00000102508.10	1674	9	39	61	-1	-1	multi-exon	FALSE	canonical	3	1402	junction_1	117.624136553685	1102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGGAAA	NA	False	NA	-53	True	NA	NA	NA	138920248	139019068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
ENSMUSG00000028747.11_1	chr4	-	1505	2	ISM	ENSMUSG00000028747.11	ENSMUST00000105802.8	2341	4	-17	12872	-17	-12571	5prime_fragment	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCACTGGGTGACTGCCT	6940	False	NA	NA	False	AATAAA	-12	NA	138802898	138801290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_138802641_138802743
ENSMUSG00000028749.8_0	chr4	-	2430	5	FSM	ENSMUSG00000028749.8	ENSMUST00000030526.7	2465	5	36	-1	36	1	multi-exon	FALSE	canonical	1	1	junction_4	0.707106781186548	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGGGTCCTTCTTAGG	NA	False	NA	NA	False	AATAAA	-22	NA	138484901	138477842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_138479735_138480573_138480684_138481436_138481582_138484017_138484071_138484671
ENSMUSG00000028750.13_0	chr4	+	1630	6	FSM	ENSMUSG00000028750.13	ENSMUST00000030530.6	1618	6	-16	4	-16	-4	multi-exon	FALSE	canonical	1	1	junction_2	1.01980390271856	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTGGGCTGGTGTCTGA	NA	False	NA	NA	False	AGTAAA	-11	NA	138452619	138471882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_138452800_138453041_138453169_138458834_138458936_138461572_138461718_138463292_138463397_138470909
ENSMUSG00000028751.14_1	chr4	+	809	4	FSM	ENSMUSG00000028751.14	ENSMUST00000105804.2	786	4	-25	2	-25	-2	multi-exon	FALSE	canonical	3	8	junction_1	6.79869268479038	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTCTTCCATTATTTCT	NA	False	NA	NA	False	NA	NA	NA	138606645	138610126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_138606808_138607661_138607801_138607980_138608088_138609725
ENSMUSG00000028756.13_0	chr4	-	2338	8	FSM	ENSMUSG00000028756.13	ENSMUST00000030536.13	2375	8	37	0	-30	0	multi-exon	FALSE	canonical	3	101	junction_7	15.5261464790783	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGTGTACACTGGAGC	NA	False	NA	-9	True	ATTAAA	-16	NA	138053581	138040722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_138041525_138042807_138043045_138043314_138043443_138044615_138044780_138045206_138045390_138047299_138047401_138048048_138048334_138053143
ENSMUSG00000028756.13_2	chr4	-	356	1	ISM	ENSMUSG00000028756.13	ENSMUST00000105816.8	1465	3	2659	3	2659	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGTGTACACTGGAGC	NA	False	NA	-9	True	ATTAAA	-16	NA	138041078	138040722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_138040700_138041100
ENSMUSG00000028757.5_1	chr4	+	1590	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	132	398	132	-398	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	2675	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTGGCCCCATGACACT	NA	False	NA	36	True	AATAAA	-22	NA	138032172	138039541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
ENSMUSG00000028759.14_0	chr4	+	3284	13	FSM	ENSMUSG00000028759.14	ENSMUST00000030541.13	3311	13	6	21	-1	1	multi-exon	FALSE	canonical	3	41	junction_1	22.3320895176027	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAACTACAGCTTAGTGA	4571	False	NA	21	True	AATAAA	-19	NA	137943943	137970460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_137944052_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
ENSMUSG00000028759.14_1	chr4	+	3080	12	FSM	ENSMUSG00000028759.14	ENSMUST00000097836.10	3113	12	5	28	-2	-6	multi-exon	FALSE	canonical	3	37	junction_1	20.9126479187884	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCTGCTGAACTACAGC	4570	False	NA	14	True	AATAAA	-12	NA	137943942	137970453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_137944052_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
ENSMUSG00000028759.14_16	chr4	+	3097	12	NIC	ENSMUSG00000028759.14	novel	3361	13	NA	NA	45	1	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	26.9615581863273	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAACTACAGCTTAGTGA	5114	False	NA	21	True	AATAAA	-19	NA	137944486	137970460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137944606_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
ENSMUSG00000028759.14_19	chr4	+	3205	13	FSM	ENSMUSG00000028759.14	ENSMUST00000165861.8	3361	13	132	24	-5	-2	multi-exon	FALSE	canonical	3	21	junction_1	26.2752524039045	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTGAACTACAGCTTAG	5201	False	NA	18	True	AATAAA	-16	NA	137944573	137970457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_137944606_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
ENSMUSG00000028759.14_30	chr4	+	2143	5	ISM	ENSMUSG00000028759.14	ENSMUST00000165861.8	3361	13	17157	17	4631	5	3prime_fragment	FALSE	canonical	3	85	junction_4	12.6589889011722	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTACAGCTTAGTGAAAAG	NA	False	NA	25	True	AATAAA	-23	NA	137961598	137970464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
ENSMUSG00000028759.14_33	chr4	+	1357	1	ISM	ENSMUSG00000028759.14	ENSMUST00000105827.8	5155	13	25497	1534	12136	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAACTACAGCTTAGTGA	4596	False	NA	21	True	AATAAA	-19	NA	137969103	137970460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137969100_137970500
ENSMUSG00000028760.17_1	chr4	+	6142	32	NIC	ENSMUSG00000028760.17	novel	6139	35	NA	NA	34	228	intron_retention	FALSE	canonical	1	1	junction_2	5.94529343664943	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAAAATATTTTCTGTTT	661	False	NA	NA	False	AATACA	-11	NA	137720366	137933693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137721456_137772653_137772730_137810203_137810300_137824062_137824243_137824555_137824671_137830625_137830724_137832624_137832748_137847656_137847766_137853120_137853946_137873595_137873685_137878892_137879140_137883922_137884057_137885701_137885822_137890757_137890929_137893043_137893242_137897787_137897935_137898365_137898603_137899883_137899989_137903158_137903292_137904248_137904344_137905227_137905322_137907857_137907919_137910438_137910657_137911962_137912079_137915356_137915530_137917925_137918052_137919277_137919360_137921354_137921454_137925389_137925537_137929231_137929314_137930655_137930803_137933283
ENSMUSG00000028760.17_13	chr4	+	6352	33	ISM	ENSMUSG00000028760.17	ENSMUST00000203828.3	5289	34	189	-898	189	-27	3prime_fragment	FALSE	canonical	1	1	junction_8	5.89814258368683	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTTTAAAATAAAGACTTC	1307	False	NA	NA	False	AATAAA	-13	NA	137721012	137934363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137721456_137772653_137772730_137785259_137785389_137810203_137810300_137824062_137824243_137824555_137824671_137830625_137830724_137832624_137832748_137847656_137847766_137853120_137853946_137873595_137873685_137878892_137879140_137883922_137884057_137885701_137885822_137890757_137890929_137893043_137893242_137897787_137897935_137898365_137898603_137899883_137899989_137903158_137903292_137904248_137904344_137905227_137905322_137907800_137907919_137910438_137910657_137911962_137912079_137915356_137915530_137917925_137918052_137919277_137919360_137921354_137921454_137925389_137925537_137929231_137929314_137930655_137930803_137933283
ENSMUSG00000028760.17_19	chr4	+	2697	18	ISM	ENSMUSG00000028760.17	ENSMUST00000203828.3	5289	34	172259	-237	-12145	237	3prime_fragment	FALSE	canonical	3	10	junction_14	4.75925614262795	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTGTTTTAATCTTTT	NA	False	NA	NA	False	AATACA	-20	NA	137893082	137933702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137893242_137897787_137897935_137898365_137898603_137899883_137899989_137903158_137903292_137904248_137904344_137905227_137905322_137907800_137907919_137910438_137910657_137911962_137912079_137915356_137915530_137917925_137918052_137919277_137919360_137921354_137921454_137925389_137925537_137929231_137929314_137930655_137930803_137933283
ENSMUSG00000028760.17_24	chr4	+	5784	33	NIC	ENSMUSG00000028760.17	novel	6139	35	NA	NA	115	305	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	5.99601104381071	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CACATTTAGCAAAAAAAAAA	742	False	NA	NA	False	TTTAAA	-40	NA	137720447	137933770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137720939_137721292_137721456_137772653_137772730_137810203_137810300_137824062_137824243_137824555_137824671_137830625_137830724_137832624_137832748_137847656_137847766_137853120_137853946_137873595_137873685_137878892_137879140_137883922_137884057_137885701_137885822_137890757_137890929_137893043_137893242_137897787_137897935_137898365_137898603_137899883_137899989_137903158_137903292_137904248_137904344_137905227_137905322_137907857_137907919_137910438_137910657_137911962_137912079_137915356_137915530_137917925_137918052_137919277_137919360_137921354_137921454_137925389_137925537_137929231_137929314_137930655_137930803_137933283
ENSMUSG00000028760.17_4	chr4	+	3152	12	NIC	ENSMUSG00000028760.17	novel	3252	13	NA	NA	71	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	4.09595648220684	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTATGTGTATGAGCGTT	698	False	NA	NA	False	ATTAAA	-14	NA	137720403	137854746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137720939_137721292_137721456_137772653_137772730_137785259_137785389_137810203_137810300_137824062_137824243_137824555_137824671_137830625_137830724_137832624_137832748_137847656_137847766_137853120_137853946_137854043
ENSMUSG00000028760.17_5	chr4	+	5707	34	FSM	ENSMUSG00000028760.17	ENSMUST00000203828.3	5289	34	-408	-10	83	10	multi-exon	FALSE	canonical	1	1	junction_9	5.94294884337772	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACACAAACGAAACAAAAGAA	710	False	NA	NA	False	NA	NA	NA	137720415	137933475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_137720939_137721292_137721456_137772653_137772730_137785259_137785389_137810203_137810300_137824062_137824243_137824555_137824671_137830625_137830724_137832624_137832748_137847656_137847766_137853120_137853946_137873595_137873685_137878892_137879140_137883922_137884057_137885701_137885822_137890757_137890929_137893043_137893242_137897787_137897935_137898365_137898603_137899883_137899989_137903158_137903292_137904248_137904344_137905227_137905322_137907800_137907919_137910438_137910657_137911962_137912079_137915356_137915530_137917925_137918052_137919277_137919360_137921354_137921454_137925389_137925537_137929231_137929314_137930655_137930803_137933283
ENSMUSG00000028763.19_1	chr4	+	2459	13	ISM	ENSMUSG00000028763.19	ENSMUST00000030547.15	14187	97	13	57129	13	-15396	5prime_fragment	TRUE	canonical	3	21	junction_4	6.15708715402196	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCAAGCAAGGTGAATATG	NA	False	NA	NA	False	NA	NA	NA	137196092	137240812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137196236_137228369_137228506_137229586_137229632_137235111_137235222_137235320_137235380_137235614_137235776_137237852_137237982_137238217_137238473_137238556_137238677_137239152_137239285_137239413_137239559_137239649_137239802_137239940
ENSMUSG00000028763.19_2	chr4	+	1399	10	ISM	ENSMUSG00000028763.19	ENSMUST00000030547.15	14187	97	14	58547	14	-16814	5prime_fragment	FALSE	canonical	3	21	junction_4	6.76227735764575	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGCCGTCCCTAGT	NA	False	NA	NA	False	ATTAAA	-15	NA	137196093	137239394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137196236_137228369_137228506_137229586_137229632_137235111_137235222_137235320_137235380_137235614_137235776_137237852_137237982_137238217_137238473_137238556_137238677_137239152
ENSMUSG00000028763.19_20	chr4	+	6751	41	ISM	ENSMUSG00000028763.19	ENSMUST00000030547.15	14187	97	75141	5	21451	-4	3prime_fragment	FALSE	canonical	3	24	junction_6	14.0481093033903	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTAGATGTCTCCTGTTTC	NA	False	NA	24	True	AATAAA	-13	NA	137271220	137297936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137271305_137271675_137271815_137271898_137272051_137272588_137272725_137272829_137272982_137273865_137274005_137275331_137275484_137275656_137275802_137276842_137276989_137277289_137277432_137277651_137277804_137278115_137278258_137278374_137278516_137279102_137279238_137279405_137279588_137280089_137280286_137280485_137280666_137280906_137281168_137282399_137282605_137283950_137284049_137284484_137284752_137286123_137286234_137286400_137286549_137286624_137286742_137287723_137287827_137288990_137289136_137289217_137289318_137289472_137289583_137289692_137289802_137291301_137291401_137291655_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
ENSMUSG00000028763.19_28	chr4	+	4793	27	ISM	ENSMUSG00000028763.19	ENSMUST00000171332.2	14176	97	83293	4	-17075	-4	3prime_fragment	FALSE	canonical	3	28	junction_1	14.1755686151255	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTAGATGTCTCCTGTTTC	1818	False	NA	24	True	AATAAA	-13	NA	137279406	137297936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137279588_137280089_137280286_137280485_137280666_137280906_137281168_137282399_137282605_137283950_137284049_137284484_137284752_137286123_137286234_137286400_137286549_137286624_137286742_137287723_137287827_137288990_137289136_137289217_137289318_137289472_137289583_137289692_137289802_137291301_137291401_137291655_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
ENSMUSG00000028763.19_32	chr4	+	4120	24	ISM	ENSMUSG00000028763.19	ENSMUST00000171332.2	14176	97	84913	0	-15455	0	3prime_fragment	FALSE	canonical	3	32	junction_7	13.1556050141841	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTCTCCTGTTTCAATG	3438	False	NA	28	True	AATAAA	-17	NA	137281026	137297940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137281168_137282399_137282605_137283950_137284049_137284484_137284752_137286123_137286234_137286400_137286549_137286624_137286742_137287723_137287827_137288990_137289136_137289217_137289318_137289472_137289583_137289692_137289802_137291301_137291401_137291655_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
ENSMUSG00000028763.19_33	chr4	+	3812	23	ISM	ENSMUSG00000028763.19	ENSMUST00000171332.2	14176	97	86452	1	-13916	-1	3prime_fragment	FALSE	canonical	3	32	junction_6	13.188791259097	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGTCTCCTGTTTCAAT	4977	False	NA	27	True	AATAAA	-16	NA	137282565	137297939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137282605_137283950_137284049_137284484_137284752_137286123_137286234_137286400_137286549_137286624_137286742_137287723_137287827_137288990_137289136_137289217_137289318_137289472_137289583_137289692_137289802_137291301_137291401_137291655_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
ENSMUSG00000028763.19_35	chr4	+	3358	20	ISM	ENSMUSG00000028763.19	ENSMUST00000171332.2	14176	97	90061	0	-10307	0	3prime_fragment	FALSE	canonical	3	32	junction_3	13.3665560240699	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTCTCCTGTTTCAATG	8586	False	NA	28	True	AATAAA	-17	NA	137286174	137297940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137286234_137286400_137286549_137286624_137286742_137287723_137287827_137288990_137289136_137289217_137289318_137289472_137289583_137289692_137289802_137291301_137291401_137291655_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
ENSMUSG00000028763.19_37	chr4	+	3297	19	ISM	ENSMUSG00000028763.19	ENSMUST00000171332.2	14176	97	90288	1	-10080	-1	3prime_fragment	FALSE	canonical	3	32	junction_2	13.6401051731943	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGTCTCCTGTTTCAAT	8813	False	NA	27	True	AATAAA	-16	NA	137286401	137297939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137286549_137286624_137286742_137287723_137287827_137288990_137289136_137289217_137289318_137289472_137289583_137289692_137289802_137291301_137291401_137291655_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
ENSMUSG00000028763.19_39	chr4	+	2839	16	ISM	ENSMUSG00000028763.19	ENSMUST00000171332.2	14176	97	92968	1	-7400	-1	3prime_fragment	FALSE	canonical	3	34	junction_4	12.7436258576592	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGTCTCCTGTTTCAAT	NA	False	NA	27	True	AATAAA	-16	NA	137289081	137297939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137289136_137289217_137289318_137289472_137289583_137289692_137289802_137291301_137291401_137291655_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
ENSMUSG00000028763.19_42	chr4	+	2578	13	ISM	ENSMUSG00000028763.19	ENSMUST00000171332.2	14176	97	93576	1	-6792	-1	3prime_fragment	FALSE	canonical	3	34	junction_1	13.3757138957972	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGTCTCCTGTTTCAAT	NA	False	NA	27	True	AATAAA	-16	NA	137289689	137297939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137289802_137291301_137291401_137291655_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
ENSMUSG00000028763.19_44	chr4	+	2300	11	ISM	ENSMUSG00000028763.19	ENSMUST00000171332.2	14176	97	95609	1	-4759	-1	3prime_fragment	FALSE	canonical	3	44	junction_4	11.506519890914	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGTCTCCTGTTTCAAT	NA	False	NA	27	True	AATAAA	-16	NA	137291722	137297939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
ENSMUSG00000028763.19_45	chr4	+	2009	10	ISM	ENSMUSG00000028763.19	ENSMUST00000171332.2	14176	97	96104	0	-4264	0	3prime_fragment	FALSE	canonical	3	44	junction_3	12.1289369324402	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTCTCCTGTTTCAATG	NA	False	NA	28	True	AATAAA	-17	NA	137292217	137297940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
ENSMUSG00000028763.19_47	chr4	+	1164	2	FSM	ENSMUSG00000028763.19	ENSMUST00000155648.2	820	2	167	-511	167	-1	multi-exon	FALSE	canonical	3	62	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGTCTCCTGTTTCAAT	NA	False	NA	27	True	AATAAA	-16	NA	137296648	137297939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_137296676_137296802
ENSMUSG00000028763.19_48	chr4	+	733	1	ISM	ENSMUSG00000028763.19	ENSMUST00000030547.15	14187	97	101126	3	724	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGATGTCTCCTGTTTCAA	310	False	NA	26	True	AATAAA	-15	NA	137297205	137297938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137297200_137297900
ENSMUSG00000028763.19_62	chr4	+	3719	22	ISM	ENSMUSG00000028763.19	ENSMUST00000171332.2	14176	97	87891	1	-12477	-1	3prime_fragment	FALSE	canonical	3	32	junction_5	13.3248272186983	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGTCTCCTGTTTCAAT	6416	False	NA	27	True	AATAAA	-16	NA	137284004	137297939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137284049_137284484_137284752_137286123_137286234_137286400_137286549_137286624_137286742_137287723_137287827_137288990_137289136_137289217_137289318_137289472_137289583_137289692_137289802_137291301_137291401_137291655_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
ENSMUSG00000028766.11_0	chr4	-	2462	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	48	12	48	-12	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	2848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGAGGCCAGAGCTGA	NA	False	NA	-14	True	AATAAA	-12	NA	137523647	137469055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
ENSMUSG00000028766.11_2	chr4	-	2946	11	NIC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	47	-11	intron_retention	FALSE	canonical	3	1320	junction_10	107.525624852869	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGGCCAGAGCTGAG	NA	False	NA	-13	True	AATAAA	-13	NA	137523648	137469054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
ENSMUSG00000028771.14_0	chr5	-	3333	18	FSM	ENSMUSG00000028771.14	ENSMUST00000030556.8	3280	18	-54	1	-54	0	multi-exon	FALSE	canonical	3	41	junction_17	13.1951023733656	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATATTGTATTGTTTTTTT	NA	False	NA	-2	True	ATTAAA	-24	NA	21260963	21191643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_21192493_21194004_21194107_21196391_21196423_21197706_21197775_21198227_21198297_21202780_21203755_21206269_21206356_21207420_21207517_21207614_21207693_21210346_21210414_21214439_21214583_21216682_21216743_21219691_21219764_21220708_21220748_21224210_21224307_21227015_21227093_21234773_21234883_21260646
ENSMUSG00000028771.14_2	chr5	-	3210	17	NIC	ENSMUSG00000028771.14	novel	3280	18	NA	NA	-41	-1	combination_of_known_junctions	FALSE	canonical	3	8	junction_16	18.4483019205021	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATATTGTATTGTTTTTT	NA	False	NA	-3	True	ATTAAA	-23	NA	21260950	21191644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_21192493_21194004_21194107_21196391_21196423_21197706_21197775_21198227_21198297_21202780_21203755_21206269_21206356_21207420_21207517_21207614_21207693_21210346_21210414_21214439_21214583_21216682_21216743_21219691_21219764_21220708_21220748_21224210_21224307_21227015_21227093_21260646
ENSMUSG00000028771.14_3	chr5	-	1529	6	ISM	ENSMUSG00000028771.14	ENSMUST00000030556.8	3280	18	57719	1	3219	0	3prime_fragment	FALSE	canonical	3	62	junction_4	8.74070935336486	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATATTGTATTGTTTTTTT	NA	False	NA	-2	True	ATTAAA	-24	NA	21203190	21191643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_21192493_21194004_21194107_21196391_21196423_21197706_21197775_21198227_21198297_21202780
ENSMUSG00000028772.20_0	chr4	-	1352	7	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	1	194	combination_of_known_splicesites	FALSE	canonical	3	73	junction_5	86.0503728444373	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAAGGCTTTATTCCTAT	NA	False	NA	-12	True	CATAAA	-28	NA	130253735	130209877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130247928_130248050_130253668
ENSMUSG00000028772.20_15	chr4	-	1561	6	NIC	ENSMUSG00000028772.20	novel	286	3	NA	NA	1	1033	combination_of_known_splicesites	FALSE	canonical	2	9	junction_1	100.550484832247	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGACAGTGACATTATTGA	NA	False	NA	NA	False	ATTAAA	-14	NA	130253735	130229615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_130230738_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
ENSMUSG00000028772.20_2	chr4	-	1301	7	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	-10	195	combination_of_known_splicesites	FALSE	canonical	2	6	junction_6	108.196837086652	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGCTTTATTCCTATA	NA	False	NA	-11	True	CATAAA	-29	NA	130253746	130209876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130253668
ENSMUSG00000028772.20_3	chr4	-	1408	8	FSM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	1	704	1	192	multi-exon	FALSE	canonical	3	221	junction_6	38.5094740529747	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAAAGGCTTTATTCCT	NA	False	NA	-14	True	CATAAA	-26	NA	130253735	130209879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
ENSMUSG00000028772.20_7	chr4	-	1236	6	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	-4	194	combination_of_known_splicesites	FALSE	canonical	3	25	junction_5	110.937099295051	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAAGGCTTTATTCCTAT	NA	False	NA	-12	True	CATAAA	-28	NA	130253740	130209877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130253668
ENSMUSG00000028773.9_2	chr4	+	673	4	FSM	ENSMUSG00000028773.9	ENSMUST00000070532.8	823	4	145	5	145	-5	multi-exon	FALSE	canonical	3	4337	junction_3	149.244765402342	1261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCAGTTGTCTGTCTTTGG	NA	False	NA	26	True	AATAAA	-15	NA	130202532	130209251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_130202644_130206083_130206257_130207746_130207849_130208964
ENSMUSG00000028776.15_0	chr4	-	1940	12	FSM	ENSMUSG00000028776.15	ENSMUST00000105999.9	1952	12	7	5	-3	-3	multi-exon	FALSE	canonical	3	185	junction_11	29.3189922368611	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTACAGTGTCTGGGAGT	NA	False	NA	NA	False	AATAAA	-14	NA	130068588	130059399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685_130068001_130068515
ENSMUSG00000028776.15_5	chr4	-	1869	11	ISM	ENSMUSG00000028776.15	ENSMUST00000105999.9	1952	12	593	5	482	-3	3prime_fragment	FALSE	canonical	3	205	junction_9	24.2991769407937	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTACAGTGTCTGGGAGT	NA	False	NA	NA	False	AATAAA	-14	NA	130068002	130059399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685
ENSMUSG00000028779.17_12	chr4	+	1364	4	ISM	ENSMUSG00000028779.17	ENSMUST00000030563.6	1551	5	13685	19	13685	-19	3prime_fragment	FALSE	canonical	3	218	junction_2	13.4742552876052	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCCATGTTTTCCACCA	8289	False	NA	6	True	AATAAA	-13	NA	130015033	130021908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_130015235_130018855_130019012_130019446_130019591_130021045
ENSMUSG00000028779.17_9	chr4	+	1474	5	FSM	ENSMUSG00000028779.17	ENSMUST00000030563.6	1551	5	59	18	59	-18	multi-exon	FALSE	canonical	3	185	junction_1	25.1047804212664	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCATGTTTTCCACCAT	9337	False	NA	7	True	AATAAA	-14	NA	130001407	130021909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
ENSMUSG00000028780.14_0	chr5	+	3978	18	FSM	ENSMUSG00000028780.14	ENSMUST00000030568.14	5491	18	367	1146	-1	-1143	multi-exon	FALSE	canonical	0	0	junction_1	1.78420598683566	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTCTTTTAATTATACA	NA	False	NA	NA	False	AATAAA	-18	NA	17779645	17934120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_17779964_17781827_17781969_17858705_17858867_17860000_17860064_17867917_17868038_17875447_17875539_17877426_17877547_17880039_17880183_17881308_17881424_17883309_17883380_17886936_17887082_17899640_17899864_17916383_17916473_17919408_17919451_17921908_17922067_17926851_17926920_17929078_17929210_17932340
ENSMUSG00000028782.15_1	chr4	+	4980	28	FSM	ENSMUSG00000028782.15	ENSMUST00000120204.8	5170	28	189	1	-105	-1	multi-exon	FALSE	canonical	2	10	junction_2	6.85835527200487	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGCTGCCCGGATTGTT	NA	False	NA	8	True	AATAAA	-14	NA	129878851	129916425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129879101_129885846_129886673_129898817_129898902_129899182_129899348_129901354_129901520_129901602_129901771_129901864_129901967_129902115_129902223_129903003_129903199_129903274_129903344_129903446_129903556_129903850_129904188_129905105_129905212_129905394_129905439_129905617_129905745_129906068_129906173_129906266_129906370_129907285_129907437_129907614_129907685_129908115_129908183_129908343_129908430_129910854_129911027_129911321_129911418_129911707_129911748_129912453_129913074_129915011_129915048_129915355_129915455_129915942
ENSMUSG00000028782.15_10	chr4	+	5311	29	NIC	ENSMUSG00000028782.15	novel	5104	30	NA	NA	22	-2	combination_of_known_junctions	TRUE	canonical	2	5	junction_4	7.28527659749723	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGGCTGCCCGGATTGT	NA	False	NA	7	True	AATAAA	-13	NA	129878684	129916424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_129879101_129885846_129886673_129898817_129898902_129899182_129899348_129900544_129900710_129901354_129901520_129901602_129901771_129901864_129901967_129902115_129902223_129903003_129903199_129903274_129903344_129903446_129903556_129903850_129904188_129905105_129905212_129905394_129905439_129905617_129905745_129906068_129906173_129906266_129906370_129907285_129907437_129907614_129907685_129908115_129908183_129908343_129908430_129910854_129911027_129911321_129911418_129911707_129911748_129912453_129913074_129915011_129915048_129915355_129915455_129915942
ENSMUSG00000028782.15_13	chr4	+	4710	27	ISM	ENSMUSG00000028782.15	ENSMUST00000120204.8	5170	28	7202	4	3	-4	3prime_fragment	FALSE	canonical	2	10	junction_1	6.77097879528166	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGGCTGCCCGGATT	NA	False	NA	5	True	AATAAA	-11	NA	129885864	129916422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_129886673_129898817_129898902_129899182_129899348_129901354_129901520_129901602_129901771_129901864_129901967_129902115_129902223_129903003_129903199_129903274_129903344_129903446_129903556_129903850_129904188_129905105_129905212_129905394_129905439_129905617_129905745_129906068_129906173_129906266_129906370_129907285_129907437_129907614_129907685_129908115_129908183_129908343_129908430_129910854_129911027_129911321_129911418_129911707_129911748_129912453_129913074_129915011_129915048_129915355_129915455_129915942
ENSMUSG00000028782.15_17	chr4	+	3832	25	NIC	ENSMUSG00000028782.15	novel	4871	29	NA	NA	-3135	-1	combination_of_known_junctions	FALSE	canonical	2	12	junction_14	5.46055934253382	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGCTGCCCGGATTGTT	1488	False	NA	8	True	AATAAA	-14	NA	129900533	129916425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_129900710_129901354_129901520_129901602_129901771_129901864_129901967_129902115_129902223_129903003_129903199_129903274_129903344_129903446_129903556_129903850_129904188_129905105_129905212_129905394_129905439_129905617_129905745_129906068_129906173_129906266_129906370_129907285_129907437_129907614_129907685_129908115_129908183_129908343_129908430_129910854_129911027_129911321_129911418_129911707_129911748_129912453_129913074_129915011_129915048_129915355_129915455_129915942
ENSMUSG00000028782.15_19	chr4	+	3829	25	NNC	ENSMUSG00000028782.15	novel	4871	29	NA	NA	-3135	-1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_23	6.67382428264002	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGCTGCCCGGATTGTT	1488	False	NA	8	True	AATAAA	-14	NA	129900533	129916425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_129900710_129901354_129901520_129901602_129901771_129901864_129901967_129902115_129902223_129903003_129903199_129903274_129903344_129903446_129903556_129903850_129904188_129905105_129905212_129905394_129905439_129905617_129905745_129906068_129906173_129906266_129906370_129907285_129907437_129907614_129907685_129908115_129908183_129908343_129908430_129910854_129911027_129911321_129911418_129911707_129911748_129912453_129913074_129915011_129915048_129915358_129915455_129915942
ENSMUSG00000028782.15_42	chr4	+	4127	24	NIC	ENSMUSG00000028782.15	novel	4871	29	NA	NA	-3135	-1	intron_retention	FALSE	canonical	2	12	junction_13	5.57031016977723	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGCTGCCCGGATTGTT	1488	False	NA	8	True	AATAAA	-14	NA	129900533	129916425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_129900710_129901354_129901520_129901602_129901771_129901864_129901967_129902115_129902223_129903003_129903199_129903274_129903344_129903446_129904188_129905105_129905212_129905394_129905439_129905617_129905745_129906068_129906173_129906266_129906370_129907285_129907437_129907614_129907685_129908115_129908183_129908343_129908430_129910854_129911027_129911321_129911418_129911707_129911748_129912453_129913074_129915011_129915048_129915355_129915455_129915942
ENSMUSG00000028785.14_0	chr4	-	1442	3	FSM	ENSMUSG00000028785.14	ENSMUST00000095807.10	1666	3	217	7	217	-1	multi-exon	FALSE	canonical	2	3	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTACTCGGTGGCCAGG	NA	False	NA	-7	True	AATAAA	-15	NA	129012543	129005369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129006319_129006467_129006574_129012156
ENSMUSG00000028788.15_1	chr4	+	3627	6	FSM	ENSMUSG00000028788.15	ENSMUST00000030578.14	3646	6	-2	21	-2	-21	multi-exon	FALSE	canonical	3	460	junction_1	910.936792538319	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAACATATTTTACATG	NA	False	NA	-6	True	NA	NA	NA	129714011	129743750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129714395_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
ENSMUSG00000028788.15_37	chr4	+	2921	5	ISM	ENSMUSG00000028788.15	ENSMUST00000165853.2	3382	6	18608	31	165	-6	3prime_fragment	FALSE	canonical	3	2484	junction_4	143.886239786854	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCTTTTTGTGAATTTC	NA	False	NA	9	True	AATAAA	-10	NA	129733108	129743765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
ENSMUSG00000028788.15_41	chr4	+	1804	1	ISM	ENSMUSG00000028788.15	ENSMUST00000030578.14	3646	6	27950	4	9020	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTTTTGTGAATTTCTT	NA	False	NA	11	True	AATAAA	-12	NA	129741963	129743767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_129742000_129743800
ENSMUSG00000028789.17_0	chr4	-	1698	9	NIC	ENSMUSG00000028789.17	novel	2063	11	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	8.93028554974588	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACCCTTCAGTGGAATCA	NA	False	NA	NA	False	AATAAA	-24	NA	128856232	128825808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_128826285_128828249_128828465_128839849_128839963_128841251_128841412_128842584_128842751_128843382_128843518_128844392_128844566_128855876_128855998_128856093
ENSMUSG00000028789.17_1	chr4	-	2349	8	NIC	ENSMUSG00000028789.17	novel	2063	11	NA	NA	3	781	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	8.7411763090162	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTGTTATTATTTATT	NA	False	NA	NA	False	CATAAA	-19	NA	128856229	128825033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_128826285_128828249_128828465_128839849_128839963_128841251_128841412_128842584_128842751_128843382_128843518_128844392_128844566_128856093
ENSMUSG00000028789.17_19	chr4	-	1443	3	FSM	ENSMUSG00000028789.17	ENSMUST00000156739.2	1104	3	-10	-329	1	329	multi-exon	FALSE	canonical	0	0	junction_2	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTATTTTGCATAACA	NA	False	NA	NA	False	ATTAAA	-12	NA	128856231	128854168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_128855353_128855876_128855998_128856093
ENSMUSG00000028789.17_5	chr4	-	2070	11	FSM	ENSMUSG00000028789.17	ENSMUST00000030581.10	2063	11	-1	-6	-1	6	multi-exon	FALSE	canonical	0	0	junction_10	8.67698104181403	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACCCTTCAGTGGAATCA	NA	False	NA	NA	False	AATAAA	-24	NA	128856233	128825808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_128826285_128828249_128828465_128839849_128839963_128841251_128841412_128842584_128842751_128843382_128843518_128844392_128844566_128853576_128853751_128855155_128855353_128855876_128855998_128856093
ENSMUSG00000028789.17_9	chr4	-	1892	10	NIC	ENSMUSG00000028789.17	novel	2063	11	NA	NA	3	6	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	8.90831211236775	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACCCTTCAGTGGAATCA	NA	False	NA	NA	False	AATAAA	-24	NA	128856229	128825808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_128826285_128828249_128828465_128839849_128839963_128841251_128841412_128842584_128842751_128843382_128843518_128844392_128844566_128855155_128855353_128855876_128855998_128856093
ENSMUSG00000028790.14_0	chr4	-	2689	9	FSM	ENSMUSG00000028790.14	ENSMUST00000066257.6	3738	9	5	1044	5	-1044	multi-exon	FALSE	canonical	3	582	junction_8	66.0235516690825	1166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCAAAGTAAATGTGATGA	4986	False	NA	NA	False	AATAAA	-16	NA	129636084	129608655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129609980_129612875_129612935_129613831_129613900_129614444_129614647_129616437_129616572_129619368_129619516_129621347_129621465_129623993_129624119_129635571
ENSMUSG00000028792.15_1	chr4	+	1698	7	FSM	ENSMUSG00000028792.15	ENSMUST00000102604.11	1781	7	81	2	-48	-2	multi-exon	FALSE	canonical	3	1917	junction_3	122.234746833023	2088	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCCTGTTGTGGAGTTTT	2950	False	NA	27	True	AATAAA	-17	NA	128887097	128905320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
ENSMUSG00000028793.16_0	chr4	+	2656	9	FSM	ENSMUSG00000028793.16	ENSMUST00000168461.8	2532	9	-130	6	-130	-6	multi-exon	FALSE	canonical	3	132	junction_2	17.2005632175228	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGACCTCATGTCACTGT	NA	False	NA	10	True	AATAAA	-13	NA	128951933	128978313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_128952690_128965529_128965736_128967294_128967437_128969362_128969526_128969954_128970070_128972699_128972841_128974134_128974343_128976539_128976672_128977520
ENSMUSG00000028793.16_4	chr4	+	2689	9	FSM	ENSMUSG00000028793.16	ENSMUST00000097874.9	1992	9	-703	6	-160	-6	multi-exon	FALSE	canonical	3	28	junction_2	45.8214946831724	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGACCTCATGTCACTGT	NA	False	NA	10	True	AATAAA	-13	NA	128951903	128978313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_128952690_128965529_128965736_128967291_128967437_128969362_128969526_128969954_128970070_128972699_128972841_128974134_128974343_128976539_128976672_128977520
ENSMUSG00000028795.16_0	chr4	-	803	6	FSM	ENSMUSG00000028795.16	ENSMUST00000030586.15	879	6	62	14	1	-12	multi-exon	FALSE	canonical	3	76	junction_3	6.82934843158555	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGAAAAGCGACTACTC	NA	False	NA	-16	True	ATTAAA	-2	NA	129517678	129513080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129516392_129516581_129517606
ENSMUSG00000028796.18_1	chr4	+	3889	15	FSM	ENSMUSG00000028796.18	ENSMUST00000030588.13	3949	15	51	9	15	-9	multi-exon	FALSE	canonical	1	2	junction_6	86.1216806475061	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTCTGTGGCTTTCT	NA	False	NA	11	True	AATAAA	-12	NA	128548545	128646665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_128548610_128598790_128599028_128601729_128601889_128602769_128602848_128603291_128603457_128604850_128604938_128605851_128606153_128616701_128617094_128617340_128617507_128637146_128637350_128638794_128638925_128639582_128639698_128640893_128641036_128641800_128642078_128645292
ENSMUSG00000028796.18_10	chr4	+	2688	8	NIC	ENSMUSG00000028796.18	novel	2535	7	NA	NA	9	-7	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	83.6650269508943	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTTCTGTGGCTTTCTCC	NA	False	NA	13	True	AATAAA	-14	NA	128621386	128646667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_128621664_128635708_128635878_128637146_128637350_128638794_128638925_128639582_128639698_128640893_128641036_128641800_128642078_128645292
ENSMUSG00000028796.18_6	chr4	+	2515	7	FSM	ENSMUSG00000028796.18	ENSMUST00000106079.10	2535	7	13	7	13	-7	multi-exon	FALSE	canonical	3	155	junction_1	20.8865985742054	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTTCTGTGGCTTTCTCC	NA	False	NA	13	True	AATAAA	-14	NA	128621390	128646667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_128621664_128637146_128637350_128638794_128638925_128639582_128639698_128640893_128641036_128641800_128642078_128645292
ENSMUSG00000028796.18_8	chr4	+	2422	7	NIC	ENSMUSG00000028796.18	novel	2535	7	NA	NA	10	-8	combination_of_known_junctions	FALSE	canonical	3	61	junction_2	50.0513625078168	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTTCTGTGGCTTTCTC	NA	False	NA	12	True	AATAAA	-13	NA	128621387	128646666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_128621664_128637146_128637255_128638794_128638925_128639582_128639698_128640893_128641036_128641800_128642078_128645292
ENSMUSG00000028797.21_0	chr4	+	1518	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	1	0	0	0	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTTAGCAAATGT	3197	False	NA	9	True	AATAAA	-9	NA	129494493	129502314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_1	chr4	+	1622	6	NIC	ENSMUSG00000028797.21	novel	769	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_2	295.098220936691	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTTAGCAAATGT	3203	False	NA	9	True	AATAAA	-9	NA	129494499	129502314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_129494525_129494775_129494928_129495199_129495419_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_2	chr4	+	1403	5	FSM	ENSMUSG00000028797.21	ENSMUST00000102591.10	1437	5	27	7	0	0	multi-exon	FALSE	canonical	3	325	junction_2	181.287582310538	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTTAGCAAATGT	3203	False	NA	9	True	AATAAA	-9	NA	129494499	129502314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_27	chr4	+	1601	4	ISM	ENSMUSG00000028797.21	ENSMUST00000102591.10	1437	5	77	10	50	-3	3prime_fragment	FALSE	canonical	3	325	junction_1	193.096406549221	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAACAAAGCTTAGCAAA	3253	False	NA	6	True	AATAAA	-6	NA	129494549	129502311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_129494928_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_28	chr4	+	1483	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174350.8	1124	4	280	-639	-1	-5	multi-exon	FALSE	canonical	3	284	junction_1	212.397426224205	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGCAAACAAAGCTTAGCA	3478	False	NA	4	True	AATAAA	-4	NA	129494774	129502309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129495037_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_6	chr4	+	1737	6	NIC	ENSMUSG00000028797.21	novel	1519	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	299.030834530488	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTTAGCAAATGT	3197	False	NA	9	True	AATAAA	-9	NA	129494493	129502314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_129494525_129494775_129495037_129495199_129495419_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_9	chr4	+	1336	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174819.8	652	4	12	-696	0	0	multi-exon	FALSE	canonical	3	97	junction_2	255.064697674923	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTTAGCAAATGT	3203	False	NA	9	True	AATAAA	-9	NA	129494499	129502314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129494525_129494775_129494928_129500879_129500973_129501248
ENSMUSG00000028798.17_0	chr4	-	1074	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	28	21	-4	-21	multi-exon	FALSE	canonical	3	822	junction_10	179.667915889287	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAGTTCCTTGTCAGG	6405	False	NA	-21	True	AATAAA	-11	NA	129494413	129485773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
ENSMUSG00000028798.17_1	chr4	-	1048	10	ISM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	146	21	97	-21	3prime_fragment	FALSE	canonical	3	1341	junction_3	45.5241083871441	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAGTTCCTTGTCAGG	6523	False	NA	-21	True	AATAAA	-11	NA	129494295	129485773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201
ENSMUSG00000028799.16_0	chr4	-	3088	9	FSM	ENSMUSG00000028799.16	ENSMUST00000106072.9	2812	9	-292	16	-292	0	multi-exon	FALSE	canonical	3	13	junction_4	3.19912097301743	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAAAAGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	128700130	128666896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_128668431_128670876_128671036_128671160_128671240_128679762_128679988_128680685_128681014_128683656_128683904_128684042_128684107_128688643_128688770_128699804
ENSMUSG00000028799.16_3	chr4	-	2922	8	NIC	ENSMUSG00000028799.16	novel	2674	8	NA	NA	-252	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	5.03457433905889	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAAAAGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	128700090	128666896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_128668431_128670876_128671036_128671160_128671240_128679762_128679988_128680685_128681014_128683656_128683904_128684042_128684107_128699804
ENSMUSG00000028799.16_4	chr4	-	2069	5	ISM	ENSMUSG00000028799.16	ENSMUST00000071108.14	2674	8	7924	0	3128	0	3prime_fragment	FALSE	canonical	3	13	junction_4	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAAAAGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	128680757	128666896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_128668431_128670876_128671036_128671160_128671240_128679762_128679988_128680685
ENSMUSG00000028800.16_0	chr4	-	1977	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	55	6	33	-6	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	2462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTCGGCCCTGGTTGGTT	8863	False	NA	-11	True	AATAAA	-16	NA	129436451	129409902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ENSMUSG00000028801.15_1	chr4	+	1647	4	ISM	ENSMUSG00000028801.15	ENSMUST00000063707.3	2380	9	29377	105	29377	-105	3prime_fragment	FALSE	canonical	3	11	junction_1	4.02768199119819	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAAGCCGGGTTCTTTGT	NA	False	NA	6	True	ATTAAA	-18	NA	135252674	135265009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135252843_135256802_135256969_135260949_135261141_135263887
ENSMUSG00000028803.19_1	chr4	-	2021	1	ISM	ENSMUSG00000028803.19	ENSMUST00000102549.10	5153	12	43708	3	4148	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTTCGGGTCCTGTGTTG	NA	False	NA	-6	True	ATTAAA	-19	NA	135178226	135176205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_135176200_135178200
ENSMUSG00000028803.19_3	chr4	-	2324	12	FSM	ENSMUSG00000028803.19	ENSMUST00000102549.10	5153	12	94	2735	-23	259	multi-exon	FALSE	canonical	2	39	junction_10	9.94031776933574	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTCCTGAAGATCCACTT	4282	False	NA	NA	False	NA	NA	NA	135221840	135178937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135179884_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243_135218594_135221740
ENSMUSG00000028803.19_4	chr4	-	3568	11	ISM	ENSMUSG00000028803.19	ENSMUST00000102549.10	5153	12	3456	1276	3339	-1276	3prime_fragment	FALSE	canonical	2	39	junction_10	10.406248123123	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGATCGCTGGTAGGG	7644	False	NA	-9	True	ATTAAA	-14	NA	135218478	135177478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_135179884_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243
ENSMUSG00000028803.19_5	chr4	-	4889	12	NIC	ENSMUSG00000028803.19	novel	5153	12	NA	NA	3323	-3	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	21.7734389710973	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTTCGGGTCCTGTGTTG	7628	False	NA	-6	True	ATTAAA	-19	NA	135218494	135176205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_135179884_135182183_135182216_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243
ENSMUSG00000028803.19_6	chr4	-	2459	13	NIC	ENSMUSG00000028803.19	novel	5153	12	NA	NA	-15	370	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	20.9103576142436	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGGTCTGCAGCTTTCT	4290	False	NA	-6	True	NA	NA	NA	135221832	135178826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_135179884_135182183_135182216_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243_135218594_135221740
ENSMUSG00000028803.19_8	chr4	-	4021	5	ISM	ENSMUSG00000028803.19	ENSMUST00000102549.10	5153	12	26018	8	5849	-8	3prime_fragment	FALSE	canonical	3	53	junction_1	8.40758586040012	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGAGTTCGGGTCCTG	NA	False	NA	-11	True	ATTAAA	-14	NA	135195916	135176210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_135179884_135191096_135191192_135192998_135193063_135194157_135194247_135195816
ENSMUSG00000028807.3_1	chr4	-	2066	5	FSM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	248	7	248	-7	multi-exon	FALSE	canonical	3	128	junction_4	9.35414346693485	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACAATCTTTTTCGTGAC	NA	False	NA	-7	True	AATAAA	-17	NA	129271661	129247427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129271532
ENSMUSG00000028807.3_3	chr4	-	1335	3	ISM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	17924	7	17924	-7	3prime_fragment	FALSE	canonical	3	150	junction_2	0.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACAATCTTTTTCGTGAC	9493	False	NA	-7	True	AATAAA	-17	NA	129253985	129247427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129248298_129251497_129251668_129253690
ENSMUSG00000028807.3_5	chr4	-	1938	4	ISM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	8793	7	8793	-7	3prime_fragment	FALSE	canonical	3	139	junction_3	5.43650214343336	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACAATCTTTTTCGTGAC	5683	False	NA	-7	True	AATAAA	-17	NA	129263116	129247427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021
ENSMUSG00000028809.17_0	chr4	-	3661	18	FSM	ENSMUSG00000028809.17	ENSMUST00000136342.9	3152	18	93	-602	0	-1	multi-exon	FALSE	canonical	3	663	junction_5	197.323579826916	1141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAACATTGCCACTCACA	NA	False	NA	-8	True	AATAAA	-11	NA	135080462	135047802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
ENSMUSG00000028809.17_10	chr4	-	3619	17	FSM	ENSMUSG00000028809.17	ENSMUST00000105861.8	3797	17	170	8	0	-1	multi-exon	FALSE	canonical	3	283	junction_5	249.404846271579	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAACATTGCCACTCACA	NA	False	NA	-8	True	AATAAA	-11	NA	135080462	135047802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
ENSMUSG00000028811.13_0	chr4	+	2354	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	182	373	40	-373	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	2632	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTGCACGGAGTCTCG	895	False	NA	23	True	AATAAA	-13	NA	129083734	129113027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
ENSMUSG00000028820.14_0	chr4	+	3014	10	FSM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	2	449	2	-449	multi-exon	FALSE	canonical	3	697	junction_1	123.17016233199	1383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGAAGCCTTTTCATG	NA	False	NA	8	True	ATTAAA	-8	NA	126915118	126924580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126923619
ENSMUSG00000028820.14_1	chr4	+	2263	12	NIC	ENSMUSG00000028820.14	novel	925	10	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	3	77	junction_9	288.88503246702	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTGTCTTTGTTCAA	NA	False	NA	12	True	AATAAA	-13	NA	126915118	126930800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126929600_126929648_126930355_126930443_126930724
ENSMUSG00000028820.14_47	chr4	+	865	1	ISM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	8599	449	3478	-449	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGAAGCCTTTTCATG	NA	False	NA	8	True	ATTAAA	-8	NA	126923715	126924580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_126923700_126924600
ENSMUSG00000028821.9_0	chr4	+	1277	7	FSM	ENSMUSG00000028821.9	ENSMUST00000030622.3	1369	7	78	14	-34	-14	multi-exon	FALSE	canonical	3	670	junction_5	39.6628149390445	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGAGTCTCGAACAGTGT	NA	False	NA	NA	False	AATAAA	-10	NA	134658286	134664845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134658330_134658490_134658596_134661766_134661893_134662242_134662361_134662684_134662776_134663293_134663393_134664150
ENSMUSG00000028822.12_1	chr4	-	1173	7	FSM	ENSMUSG00000028822.12	ENSMUST00000030626.12	1204	7	28	3	19	-3	multi-exon	FALSE	canonical	3	544	junction_1	61.5938759582116	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTCTTTCTCGTTATAC	NA	False	NA	-23	True	ATTAAA	-16	NA	134642307	134625162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
ENSMUSG00000028822.12_4	chr4	-	1237	7	FSM	ENSMUSG00000028822.12	ENSMUST00000105863.2	719	7	21	-539	21	-3	multi-exon	FALSE	canonical	3	28	junction_6	233.0748568355	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTCTTTCTCGTTATAC	NA	False	NA	-23	True	ATTAAA	-16	NA	134642305	134625162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640573_134642199
ENSMUSG00000028822.12_5	chr4	-	236	1	ISM	ENSMUSG00000028822.12	ENSMUST00000030626.12	1204	7	16937	3	16928	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTCTTTCTCGTTATAC	NA	False	NA	-23	True	ATTAAA	-16	NA	134625398	134625162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_134625200_134625400
ENSMUSG00000028825.8_1	chr4	+	1432	8	ISM	ENSMUSG00000028825.8	ENSMUST00000030627.8	1514	10	15038	1	-236	-1	3prime_fragment	FALSE	canonical	3	9	junction_1	5.80288457473997	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCACAAGGTCTCTTTCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	134606884	134623482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_134607352_134611324_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
ENSMUSG00000028825.8_5	chr4	+	1438	7	ISM	ENSMUSG00000028825.8	ENSMUST00000030627.8	1514	10	19005	1	3731	-1	3prime_fragment	FALSE	canonical	3	15	junction_4	4.69041575982343	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCACAAGGTCTCTTTCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	134610851	134623482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
ENSMUSG00000028826.15_0	chr4	-	3788	11	FSM	ENSMUSG00000028826.15	ENSMUST00000030628.15	3826	11	32	6	4	-6	multi-exon	FALSE	canonical	3	158	junction_8	24.8628236529965	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACTAGTTTCCTGCCT	NA	False	NA	NA	False	AATAAA	-14	NA	134580624	134530075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134531876_134533827_134534003_134536910_134537032_134538446_134538630_134539850_134540010_134555317_134555820_134557859_134558039_134560508_134560633_134563633_134563761_134565159_134565302_134580348
ENSMUSG00000028826.15_12	chr4	-	1781	1	ISM	ENSMUSG00000028826.15	ENSMUST00000150031.2	4132	3	6669	5	6669	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACTAGTTTCCTGCCTT	9030	False	NA	NA	False	AATAAA	-15	NA	134531855	134530074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_134530100_134531900
ENSMUSG00000028826.15_19	chr4	-	3508	9	NIC	ENSMUSG00000028826.15	novel	3826	11	NA	NA	15	-6	combination_of_known_splicesites	FALSE	canonical	3	20	junction_8	62.8743787245647	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACTAGTTTCCTGCCT	NA	False	NA	NA	False	AATAAA	-14	NA	134580613	134530075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_134531876_134533827_134534003_134536910_134537032_134538446_134538630_134539850_134540010_134555317_134555820_134557859_134558039_134560508_134560633_134580348
ENSMUSG00000028826.15_3	chr4	-	5181	10	NIC	ENSMUSG00000028826.15	novel	3826	11	NA	NA	10	-6	intron_retention	FALSE	canonical	3	158	junction_8	23.6397865086138	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACTAGTTTCCTGCCT	NA	False	NA	NA	False	AATAAA	-14	NA	134580618	134530075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_134531876_134533827_134534003_134536910_134537032_134538446_134538630_134539850_134540010_134555317_134555820_134557859_134558039_134560508_134560633_134563633_134565302_134580348
ENSMUSG00000028826.15_4	chr4	-	4042	12	NIC	ENSMUSG00000028826.15	novel	3826	11	NA	NA	14	-10	combination_of_known_junctions	FALSE	canonical	3	16	junction_10	71.6409781624045	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGATAAAACTAGTTTCCT	NA	False	NA	NA	False	AATAAA	-10	NA	134580614	134530079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_134531876_134533827_134534003_134536910_134537032_134538446_134538630_134539850_134540010_134555317_134555820_134557859_134558039_134560508_134560633_134563633_134563761_134564077_134564346_134565159_134565302_134580348
ENSMUSG00000028826.15_5	chr4	-	2674	6	ISM	ENSMUSG00000028826.15	ENSMUST00000030628.15	3826	11	25105	4	-17027	-4	3prime_fragment	FALSE	canonical	3	186	junction_2	14.7322774885623	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTAGTTTCCTGCCTTT	7932	False	NA	NA	False	AATAAA	-16	NA	134555551	134530073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_134531876_134533827_134534003_134536910_134537032_134538446_134538630_134539850_134540010_134555317
ENSMUSG00000028830.15_0	chr4	+	4264	21	ISM	ENSMUSG00000028830.15	ENSMUST00000102608.10	4073	24	2	15734	2	0	5prime_fragment	FALSE	canonical	2	17	junction_1	12.2363188909083	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTATGAGGTTGTG	NA	False	NA	18	True	ATTAAA	-18	NA	126647349	126748129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_126647456_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741661_126742603_126742696_126746958
ENSMUSG00000028830.15_5	chr4	+	4351	21	NIC	ENSMUSG00000028830.15	novel	4073	24	NA	NA	19	-1	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	14.5995719115322	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTGGCTATGAGGTTGT	NA	False	NA	17	True	ATTAAA	-17	NA	126647366	126748128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126647561_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741661_126742603_126742696_126746958
ENSMUSG00000028830.15_8	chr4	+	4341	21	FSM	ENSMUSG00000028830.15	ENSMUST00000047431.11	4384	21	42	1	-2	-1	multi-exon	FALSE	canonical	2	36	junction_1	9.66643677887566	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTGGCTATGAGGTTGT	NA	False	NA	17	True	ATTAAA	-17	NA	126647604	126748128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_126647789_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741661_126742603_126742696_126746958
ENSMUSG00000028830.15_9	chr4	+	4204	21	NIC	ENSMUSG00000028830.15	novel	4384	21	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	15.138031576133	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTATGAGGTTGTG	NA	False	NA	18	True	ATTAAA	-18	NA	126647592	126748129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126647639_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741661_126742603_126742696_126746958
ENSMUSG00000028832.12_0	chr4	+	771	5	FSM	ENSMUSG00000028832.12	ENSMUST00000030636.11	1060	5	57	232	-22	-53	multi-exon	FALSE	canonical	3	455	junction_1	251.409029273016	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTATTTTTCTCGTTGCA	NA	False	NA	NA	False	TTTAAA	-19	NA	134195687	134200922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134195741_134197413_134197487_134197977_134198151_134200114_134200307_134200642
ENSMUSG00000028832.12_1	chr4	+	1483	4	NIC	ENSMUSG00000028832.12	novel	1060	5	NA	NA	-21	-10	intron_retention	FALSE	canonical	3	455	junction_1	267.265577448516	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCAGTGACTTCTTTCTG	NA	False	NA	1	True	AATAAA	-17	NA	134195688	134201144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_134195741_134197413_134198151_134200114_134200307_134200642
ENSMUSG00000028832.12_2	chr4	+	3423	3	NIC	ENSMUSG00000028832.12	novel	1060	5	NA	NA	2	-11	intron_retention	FALSE	canonical	3	455	junction_1	292.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGCAGTGACTTCTTTCT	NA	False	NA	0	True	AATAAA	-16	NA	134195711	134201143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_134195741_134197413_134200307_134200642
ENSMUSG00000028833.14_0	chr4	-	3668	7	FSM	ENSMUSG00000028833.14	ENSMUST00000030637.14	3681	7	1	12	1	-12	multi-exon	FALSE	canonical	3	145	junction_6	31.1216252074913	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGAAGCCTCCTTTGTGG	NA	False	NA	-13	True	NA	NA	NA	126647201	126637554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126639065_126640338_126640482_126640888_126641114_126642270_126642513_126643677_126644647_126645733_126645875_126646763
ENSMUSG00000028833.14_1	chr4	-	3315	7	FSM	ENSMUSG00000028833.14	ENSMUST00000127079.2	2375	7	29	-969	0	-12	multi-exon	FALSE	canonical	3	56	junction_6	61.3969326052477	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGAAGCCTCCTTTGTGG	NA	False	NA	-13	True	NA	NA	NA	126647202	126637554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126639065_126640338_126640482_126640888_126641114_126642270_126642513_126643677_126644647_126645733_126645875_126647117
ENSMUSG00000028833.14_2	chr4	-	2933	5	ISM	ENSMUSG00000028833.14	ENSMUST00000030637.14	3681	7	2712	12	2712	-12	3prime_fragment	FALSE	canonical	3	197	junction_3	17.4427635425124	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGAAGCCTCCTTTGTGG	NA	False	NA	-13	True	NA	NA	NA	126644490	126637554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126639065_126640338_126640482_126640888_126641114_126642270_126642513_126643677
ENSMUSG00000028833.14_7	chr4	-	4555	6	ISM	ENSMUSG00000028833.14	ENSMUST00000030637.14	3681	7	3	12	3	-12	intron_retention	FALSE	canonical	3	191	junction_5	19.3225257148231	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGAAGCCTCCTTTGTGG	NA	False	NA	-13	True	NA	NA	NA	126647199	126637554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126639065_126640338_126640482_126640888_126641114_126642270_126642513_126643677_126644647_126645733
ENSMUSG00000028834.14_0	chr4	+	1932	9	FSM	ENSMUSG00000028834.14	ENSMUST00000105875.8	1886	9	-45	-1	-45	1	multi-exon	FALSE	canonical	1	4	junction_7	6.8545149354276	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTATGAAAGAAGTGTGAT	NA	False	NA	NA	False	AATAAA	-29	NA	134042385	134056941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134042694_134043697_134043871_134046942_134047112_134048493_134048590_134050314_134050549_134052355_134052379_134052894_134053020_134055015_134055094_134056215
ENSMUSG00000028834.14_3	chr4	+	1255	6	ISM	ENSMUSG00000028834.14	ENSMUST00000135576.2	1428	7	1219	1	1219	-1	3prime_fragment	FALSE	canonical	1	4	junction_4	8.42377587546108	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAACTATGAAAGAAGTGT	NA	False	NA	NA	False	AATAAA	-26	NA	134048517	134056938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_134048590_134050314_134050549_134052355_134052379_134052894_134053020_134055015_134055094_134056215
ENSMUSG00000028836.15_0	chr4	+	3147	8	FSM	ENSMUSG00000028836.15	ENSMUST00000105874.9	3153	8	-1	7	-1	0	multi-exon	FALSE	canonical	3	255	junction_4	12.5324069711207	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTATGAGTGTTTTGCC	2080	False	NA	9	True	AATAAA	-14	NA	134070515	134081788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134070648_134071318_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
ENSMUSG00000028836.15_18	chr4	+	3120	7	FSM	ENSMUSG00000028836.15	ENSMUST00000081094.6	2023	7	194	-1291	194	0	multi-exon	FALSE	canonical	3	255	junction_3	13.4587848221483	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTATGAGTGTTTTGCC	2778	False	NA	9	True	AATAAA	-14	NA	134071213	134081788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
ENSMUSG00000028836.15_25	chr4	+	1603	1	ISM	ENSMUSG00000028836.15	ENSMUST00000105874.9	3153	8	9669	7	9166	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTATGAGTGTTTTGCC	NA	False	NA	9	True	AATAAA	-14	NA	134080185	134081788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_134080200_134081800
ENSMUSG00000028837.9_0	chr4	+	813	6	FSM	ENSMUSG00000028837.9	ENSMUST00000030642.3	859	6	39	7	-10	-7	multi-exon	FALSE	canonical	3	3349	junction_3	129.102439945959	1076	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGATCTTTCTGGGTTT	5419	False	NA	12	True	AATAAA	-14	NA	126571461	126603500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126600014_126601346_126601397_126603271
ENSMUSG00000028838.12_0	chr4	-	4129	11	FSM	ENSMUSG00000028838.12	ENSMUST00000030643.3	4126	11	-9	6	-9	-6	multi-exon	FALSE	canonical	3	37	junction_3	6.57951365983839	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCACGCCCGGGCTATAAA	7014	False	NA	-6	True	AATAAA	-17	NA	134099878	134083688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134085142_134085288_134085458_134086395_134086557_134087059_134087147_134087842_134087933_134089611_134089719_134089893_134090027_134090393_134090514_134091891_134092000_134092208_134092300_134098268
ENSMUSG00000028838.12_10	chr4	-	2722	6	ISM	ENSMUSG00000028838.12	ENSMUST00000030643.3	4126	11	-14	5381	-14	952	5prime_fragment	FALSE	canonical	3	42	junction_3	5.19230199429887	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGCAATAAAACAAAAGA	7009	False	NA	NA	False	NA	NA	NA	134099883	134089063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_134089719_134089893_134090027_134090393_134090514_134091891_134092000_134092208_134092300_134098268
ENSMUSG00000028840.11_0	chr4	-	626	3	FSM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	12	1356	12	-1338	multi-exon	FALSE	canonical	3	614	junction_2	27	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTCCGATACTAACTTC	7680	False	NA	-25	True	AATAAA	-19	NA	133972891	133971955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133972242_133972335_133972399_133972614
ENSMUSG00000028840.11_3	chr4	-	2058	2	FSM	ENSMUSG00000028840.11	ENSMUST00000129183.2	2020	2	-48	10	2	-10	multi-exon	FALSE	canonical	3	614	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAACTACATTTATCAGT	7670	False	NA	-21	True	NA	NA	NA	133972901	133970627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133972399_133972614
ENSMUSG00000028840.11_4	chr4	-	1560	1	ISM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	724	20	674	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTATCAGTGTGCATGT	8392	False	NA	-13	True	NA	NA	NA	133972179	133970619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133970600_133972200
ENSMUSG00000028841.15_2	chr4	-	2403	21	FSM	ENSMUSG00000028841.15	ENSMUST00000030645.9	2468	21	63	2	3	-2	multi-exon	TRUE	canonical	0	0	junction_2	2.41816045786875	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCATGTGTCTTTGCTTT	2969	False	NA	NA	False	AATAAA	-19	NA	133965647	133955353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133955896_133956249_133956432_133956516_133956602_133956692_133956755_133956896_133956974_133957490_133957563_133957722_133957797_133959351_133959525_133959948_133959980_133960057_133960165_133960304_133960364_133960450_133960513_133960596_133960699_133961012_133961076_133961178_133961239_133961799_133961905_133961980_133962023_133962419_133962505_133963181_133963364_133963470_133963629_133965567
ENSMUSG00000028842.16_0	chr4	-	3313	1	ISM	ENSMUSG00000028842.16	ENSMUST00000069097.13	15595	19	93495	17	14259	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTTTTTAATCAAAAGTG	7971	False	NA	-15	True	NA	NA	NA	126229854	126226541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126226500_126229900
ENSMUSG00000028842.16_1	chr4	-	3460	1	ISM	ENSMUSG00000028842.16	ENSMUST00000069097.13	15595	19	84917	8448	5681	4397	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGAGTGAGGTCTTCC	3879	False	NA	NA	False	AATAAA	-16	NA	126238432	126234972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126235000_126238400
ENSMUSG00000028842.16_16	chr4	-	1307	7	NIC	ENSMUSG00000028842.16	novel	625	4	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	7.32006375199925	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATATCATTGTCCTTTC	2379	False	NA	NA	False	ATTAAA	-14	NA	126323334	126269474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126269734_126270699_126270835_126296957_126297095_126297997_126298207_126301534_126301656_126311020_126311193_126323060
ENSMUSG00000028842.16_17	chr4	-	1955	4	NIC	ENSMUSG00000028842.16	novel	15595	19	NA	NA	5	4675	intron_retention	FALSE	canonical	3	31	junction_1	3.39934634239519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTAATTTGTAAATCCT	2384	False	NA	NA	False	AATAAA	-18	NA	126323329	126296813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126298207_126301534_126301656_126311020_126311193_126323060
ENSMUSG00000028842.16_2	chr4	-	5599	19	FSM	ENSMUSG00000028842.16	ENSMUST00000069097.13	15595	19	21	9975	6	2870	multi-exon	FALSE	canonical	2	3	junction_6	10.4927958825138	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGAAAATACTTCTTGAAA	2385	False	NA	NA	False	ATTAAA	-7	NA	126323328	126236499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126239376_126240423_126240624_126241560_126241663_126243978_126244114_126244647_126244843_126247473_126247565_126248798_126248959_126257438_126257624_126261440_126261575_126262276_126262400_126264055_126264176_126265260_126265409_126265531_126265620_126270699_126270835_126296957_126297095_126297997_126298207_126301534_126301656_126311020_126311193_126323060
ENSMUSG00000028842.16_8	chr4	-	2950	18	ISM	ENSMUSG00000028842.16	ENSMUST00000069097.13	15595	19	9	13684	-6	-839	5prime_fragment	FALSE	canonical	2	3	junction_5	10.554849325815	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCAAATCCAAACAGAGT	2373	False	NA	NA	False	AATAAA	-29	NA	126323340	126240208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126240624_126241560_126241663_126243978_126244114_126244647_126244843_126247473_126247565_126248798_126248959_126257438_126257624_126261440_126261575_126262276_126262400_126264055_126264176_126265260_126265409_126265531_126265620_126270699_126270835_126296957_126297095_126297997_126298207_126301534_126301656_126311020_126311193_126323060
ENSMUSG00000028843.9_0	chr4	-	687	3	FSM	ENSMUSG00000028843.9	ENSMUST00000030651.9	743	3	50	6	0	1	multi-exon	FALSE	canonical	3	1437	junction_2	42.5	397	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGACTGCTTGTGGTGTC	9276	False	NA	-11	True	ATTAAA	-16	NA	133856050	133854722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133855118_133855228_133855397_133855926
ENSMUSG00000028845.16_0	chr4	-	1100	7	ISM	ENSMUSG00000028845.16	ENSMUST00000030658.13	1492	10	756	2	756	-2	3prime_fragment	FALSE	canonical	3	6	junction_6	3.0368111930481	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGCCAGGCTCTTTTCTG	4336	False	NA	NA	False	AATAAA	-11	NA	126218236	126215917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126216213_126216364_126216445_126216612_126216757_126216912_126217021_126217149_126217265_126217431_126217576_126218022
ENSMUSG00000028845.16_1	chr4	-	1490	9	ISM	ENSMUSG00000028845.16	ENSMUST00000030658.13	1492	10	127	0	127	0	3prime_fragment	FALSE	canonical	2	5	junction_7	3.35410196624968	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCAGGCTCTTTTCTGCT	3707	False	NA	NA	False	AATAAA	-13	NA	126218865	126215915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126216213_126216364_126216445_126216612_126216757_126216912_126217021_126217149_126217265_126217431_126217576_126218022_126218229_126218386_126218513_126218595
ENSMUSG00000028845.16_3	chr4	-	1603	11	NIC	ENSMUSG00000028845.16	novel	1542	11	NA	NA	30	-2	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	3.61247837363769	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGCCAGGCTCTTTTCTG	3374	False	NA	NA	False	AATAAA	-11	NA	126219198	126215917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126216213_126216364_126216445_126216612_126216757_126216912_126217021_126217149_126217265_126217431_126217576_126218022_126218229_126218386_126218513_126218595_126218802_126218926_126218997_126219089
ENSMUSG00000028847.9_0	chr4	+	1274	5	FSM	ENSMUSG00000028847.9	ENSMUST00000030660.9	1336	5	54	8	-21	-8	multi-exon	FALSE	canonical	3	345	junction_3	21.2882009573378	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCAATCCTGTCCTGTT	7679	False	NA	37	True	AATAAA	-17	NA	126156171	126169668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_126156331_126166470_126166569_126166767_126166868_126167682_126167866_126168934
ENSMUSG00000028848.14_0	chr4	+	1352	5	FSM	ENSMUSG00000028848.14	ENSMUST00000030661.14	1367	5	11	4	11	-4	multi-exon	FALSE	canonical	3	134	junction_3	14.7394029729837	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAACGTTTTTTTAGTGT	NA	False	NA	37	True	NA	NA	NA	133311683	133319042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
ENSMUSG00000028848.14_4	chr4	+	1257	5	FSM	ENSMUSG00000028848.14	ENSMUST00000105899.2	996	5	-21	-240	-21	-5	multi-exon	FALSE	canonical	3	9	junction_1	62.5154980784765	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAACGTTTTTTTAGTG	NA	False	NA	36	True	NA	NA	NA	133311708	133319041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_133312112_133313220_133313378_133315810_133315972_133317077_133317209_133318636
ENSMUSG00000028848.14_5	chr4	+	2778	4	ISM	ENSMUSG00000028848.14	ENSMUST00000030661.14	1367	5	4	13	4	-13	intron_retention	FALSE	canonical	3	134	junction_3	12.3917535302941	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTTTTTAAATAACGTTT	NA	False	NA	28	True	AAGAAA	-39	NA	133311676	133319033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133312181_133313220_133313378_133315810_133315972_133317077
ENSMUSG00000028849.18_1	chr4	-	3261	18	NIC	ENSMUSG00000028849.18	novel	3249	18	NA	NA	-19	-4	combination_of_known_splicesites	FALSE	canonical	3	52	junction_13	63.2753635019	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACCTACGTGTCCTTGGA	NA	False	NA	-4	True	AATAAA	-17	NA	126150095	126125963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126130853_126130948_126131072_126132314_126132426_126133824_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ENSMUSG00000028849.18_14	chr4	-	3356	17	NIC	ENSMUSG00000028849.18	novel	3351	17	NA	NA	-18	-4	intron_retention	FALSE	canonical	3	52	junction_12	62.4189474438652	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACCTACGTGTCCTTGGA	NA	False	NA	-4	True	AATAAA	-17	NA	126150094	126125963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126132314_126132426_126133824_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ENSMUSG00000028849.18_2	chr4	-	3272	18	FSM	ENSMUSG00000028849.18	ENSMUST00000122129.8	3249	18	-26	3	-20	-3	multi-exon	FALSE	canonical	3	86	junction_13	57.8802606030247	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTACGTGTCCTTGGAT	NA	False	NA	-3	True	AATAAA	-18	NA	126150096	126125962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126130853_126130948_126131072_126132314_126132426_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ENSMUSG00000028849.18_3	chr4	-	3368	17	FSM	ENSMUSG00000028849.18	ENSMUST00000061143.15	3351	17	-20	3	-20	-3	multi-exon	FALSE	canonical	3	86	junction_12	56.4079726191254	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTACGTGTCCTTGGAT	NA	False	NA	-3	True	AATAAA	-18	NA	126150096	126125962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126132314_126132426_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ENSMUSG00000028849.18_4	chr4	-	3257	16	NIC	ENSMUSG00000028849.18	novel	3351	17	NA	NA	-20	-3	intron_retention	FALSE	canonical	3	98	junction_11	48.1315789153949	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTACGTGTCCTTGGAT	NA	False	NA	-3	True	AATAAA	-18	NA	126150096	126125962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ENSMUSG00000028849.18_5	chr4	-	3161	17	NIC	ENSMUSG00000028849.18	novel	3249	18	NA	NA	-20	-3	combination_of_known_junctions	FALSE	canonical	3	98	junction_12	51.2541156884011	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTACGTGTCCTTGGAT	NA	False	NA	-3	True	AATAAA	-18	NA	126150096	126125962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126130853_126130948_126131072_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ENSMUSG00000028849.18_7	chr4	-	3248	16	NIC	ENSMUSG00000028849.18	novel	3195	17	NA	NA	-20	-3	intron_retention	FALSE	canonical	3	46	junction_11	59.2617545770926	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTACGTGTCCTTGGAT	NA	False	NA	-3	True	AATAAA	-18	NA	126150096	126125962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126133824_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ENSMUSG00000028849.18_9	chr4	-	3149	17	FSM	ENSMUSG00000028849.18	ENSMUST00000106132.3	3195	17	42	4	-18	-4	multi-exon	FALSE	canonical	3	46	junction_12	60.9301598143317	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACCTACGTGTCCTTGGA	NA	False	NA	-4	True	AATAAA	-17	NA	126150094	126125963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126130853_126130948_126131072_126133824_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
ENSMUSG00000028850.3_0	chr4	+	1989	7	FSM	ENSMUSG00000028850.3	ENSMUST00000030662.3	2004	7	9	6	9	-6	multi-exon	FALSE	canonical	3	33	junction_3	9.82626864865578	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGAGATCTGCCTTAGTG	NA	False	NA	7	True	AATAAA	-14	NA	133302064	133311548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_133302522_133305217_133305646_133307096_133307272_133307961_133308022_133309782_133309905_133310292_133310421_133310929
ENSMUSG00000028850.3_3	chr4	+	3476	11	Fusion	ENSMUSG00000028850.3_ENSMUSG00000028848.14	novel	2004	7	NA	NA	9	-4	multi-exon	FALSE	canonical	3	33	junction_3	55.2959311342164	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAACGTTTTTTTAGTGT	NA	False	NA	37	True	NA	NA	NA	133302064	133319042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_133302522_133305217_133305646_133307096_133307272_133307961_133308022_133309782_133309905_133310292_133310421_133310929_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
ENSMUSG00000028850.3_4	chr4	+	599	1	ISM	ENSMUSG00000028850.3	ENSMUST00000030662.3	2004	7	8890	10	3931	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCATGGAGATCTGCCTT	NA	False	NA	3	True	AATAAA	-10	NA	133310945	133311544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133310900_133311500
ENSMUSG00000028850.3_8	chr4	+	3407	11	Fusion	ENSMUSG00000028850.3_ENSMUSG00000028848.14	novel	2004	7	NA	NA	9	-4	multi-exon	FALSE	canonical	3	9	junction_7	53.3412598276419	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAACGTTTTTTTAGTGT	NA	False	NA	37	True	NA	NA	NA	133302064	133319042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_133302522_133305217_133305646_133307096_133307272_133307961_133308022_133309782_133309905_133310292_133310421_133310929_133312112_133313220_133313378_133315810_133315972_133317077_133317209_133318636
ENSMUSG00000028851.7_1	chr4	-	1295	8	FSM	ENSMUSG00000028851.7	ENSMUST00000030665.7	1316	8	19	2	19	-2	multi-exon	FALSE	canonical	3	2323	junction_4	508.87928082108	2869	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGTGTCCCTCGTCTAG	4479	False	NA	NA	False	ATTAAA	-17	NA	133273288	133259854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263183_133268449_133268528_133273115
ENSMUSG00000028854.10_0	chr4	+	4617	12	FSM	ENSMUSG00000028854.10	ENSMUST00000030669.8	4676	12	52	7	52	-7	multi-exon	FALSE	canonical	3	38	junction_3	11.7922793063796	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGAGTCCAGGGCTGCT	209	False	NA	15	True	AATAAA	-16	NA	133097068	133151006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_133098219_133139147_133139609_133142611_133142863_133143591_133143810_133145210_133145414_133146764_133146855_133147235_133147307_133147412_133147587_133147815_133147931_133148096_133148199_133148812_133148886_133149297
ENSMUSG00000028854.10_16	chr4	+	3391	11	ISM	ENSMUSG00000028854.10	ENSMUST00000030669.8	4676	12	42207	7	-4393	-7	3prime_fragment	FALSE	canonical	3	38	junction_2	12.1363091588835	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGAGTCCAGGGCTGCT	6360	False	NA	15	True	AATAAA	-16	NA	133139223	133151006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133139609_133142611_133142863_133143591_133143810_133145210_133145414_133146764_133146855_133147235_133147307_133147412_133147587_133147815_133147931_133148096_133148199_133148812_133148886_133149297
ENSMUSG00000028854.10_18	chr4	+	2901	10	ISM	ENSMUSG00000028854.10	ENSMUST00000030669.8	4676	12	45699	8	-901	-8	3prime_fragment	FALSE	canonical	3	38	junction_1	12.0901960077648	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAAGAGTCCAGGGCTGC	9852	False	NA	14	True	AATAAA	-15	NA	133142715	133151005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133142863_133143591_133143810_133145210_133145414_133146764_133146855_133147235_133147307_133147412_133147587_133147815_133147931_133148096_133148199_133148812_133148886_133149297
ENSMUSG00000028854.10_19	chr4	+	2755	9	ISM	ENSMUSG00000028854.10	ENSMUST00000030669.8	4676	12	46575	7	-25	-7	3prime_fragment	FALSE	canonical	3	45	junction_3	11.2888219048756	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGAGTCCAGGGCTGCT	NA	False	NA	15	True	AATAAA	-16	NA	133143591	133151006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133143810_133145210_133145414_133146764_133146855_133147235_133147307_133147412_133147587_133147815_133147931_133148096_133148199_133148812_133148886_133149297
ENSMUSG00000028854.10_20	chr4	+	2333	7	ISM	ENSMUSG00000028854.10	ENSMUST00000030669.8	4676	12	49749	7	-26	-7	3prime_fragment	FALSE	canonical	3	45	junction_1	12.5432584814845	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGAGTCCAGGGCTGCT	NA	False	NA	15	True	AATAAA	-16	NA	133146765	133151006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133146855_133147235_133147307_133147412_133147587_133147815_133147931_133148096_133148199_133148812_133148886_133149297
ENSMUSG00000028854.10_23	chr4	+	1167	1	ISM	ENSMUSG00000028854.10	ENSMUST00000030669.8	4676	12	52823	7	2557	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGAGTCCAGGGCTGCT	NA	False	NA	15	True	AATAAA	-16	NA	133149839	133151006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133149800_133151000
ENSMUSG00000028857.17_0	chr4	-	1450	6	FSM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	31	3	9	-3	multi-exon	FALSE	canonical	3	666	junction_4	52.562343935559	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGGTGTCTGTCATTTT	NA	False	NA	-15	True	AATAAA	-11	NA	133005072	132993358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
ENSMUSG00000028857.17_2	chr4	-	1364	5	FSM	ENSMUSG00000028857.17	ENSMUST00000139030.2	546	5	11	-829	-8	-2	multi-exon	FALSE	canonical	3	79	junction_4	309.884151740614	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGTGTCTGTCATTTTC	NA	False	NA	-14	True	AATAAA	-12	NA	133005070	132993357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_133004841
ENSMUSG00000028857.17_3	chr4	-	1569	7	FSM	ENSMUSG00000028857.17	ENSMUST00000134781.8	613	7	-116	-840	17	-2	multi-exon	FALSE	canonical	3	22	junction_5	347.535609686259	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGTGTCTGTCATTTTC	NA	False	NA	-14	True	AATAAA	-12	NA	133005045	132993357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132997980_132998126_132998273_132998359_133004841
ENSMUSG00000028860.14_0	chr4	-	1927	15	FSM	ENSMUSG00000028860.14	ENSMUST00000030674.8	1951	15	15	9	-11	-1	multi-exon	TRUE	canonical	1	4	junction_9	2.42541812090709	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTACTGACTGCTTAAC	NA	False	NA	-5	True	AATAAA	-11	NA	132990409	132980409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132980620_132980765_132980972_132982843_132982944_132983044_132983124_132983352_132983512_132983798_132983896_132984175_132984343_132984446_132984561_132984727_132984823_132985044_132985133_132986171_132986218_132986292_132986369_132986598_132986748_132988163_132988393_132990297
ENSMUSG00000028861.14_0	chr4	+	875	8	FSM	ENSMUSG00000028861.14	ENSMUST00000030675.8	937	8	64	-2	12	2	multi-exon	FALSE	canonical	3	1282	junction_7	51.9186962510439	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATGATGGAAGATGGCC	NA	False	NA	29	True	AATAAA	-14	NA	125940781	125949327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117_125945203_125947292_125947352_125948753_125948946_125949172
ENSMUSG00000028861.14_2	chr4	+	2956	7	NIC	ENSMUSG00000028861.14	novel	937	8	NA	NA	21	2	intron_retention	FALSE	canonical	3	1282	junction_6	49.8745648825353	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATGATGGAAGATGGCC	NA	False	NA	29	True	AATAAA	-14	NA	125940790	125949327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117_125947352_125948753_125948946_125949172
ENSMUSG00000028862.7_1	chr4	+	4345	29	FSM	ENSMUSG00000028862.7	ENSMUST00000030677.7	4334	29	-15	4	-15	-3	multi-exon	TRUE	canonical	2	4	junction_2	5.06727697273075	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGCTTGTCTTGGCAAC	8434	False	NA	14	True	ATTAAA	-14	NA	132968113	132980236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132968743_132970128_132970269_132970363_132970388_132970621_132970813_132970985_132971155_132972292_132972400_132972816_132972988_132973088_132973202_132973568_132973729_132973940_132974104_132974185_132974294_132974390_132974441_132974512_132974609_132974724_132974813_132974891_132975026_132975323_132975452_132975698_132975836_132976102_132976209_132976972_132977131_132977240_132977434_132977518_132977658_132977959_132978117_132978234_132978412_132978652_132978759_132978921_132979085_132979169_132979283_132979365_132979440_132979710_132979788_132979962
ENSMUSG00000028862.7_8	chr4	+	3359	25	ISM	ENSMUSG00000028862.7	ENSMUST00000030677.7	4334	29	2859	4	2859	-3	3prime_fragment	FALSE	canonical	2	8	junction_3	4.63212664142748	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGCTTGTCTTGGCAAC	NA	False	NA	14	True	ATTAAA	-14	NA	132970987	132980236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_132971155_132972292_132972400_132972816_132972988_132973088_132973202_132973568_132973729_132973940_132974104_132974185_132974294_132974390_132974441_132974512_132974609_132974724_132974813_132974891_132975026_132975323_132975452_132975698_132975836_132976102_132976209_132976972_132977131_132977240_132977434_132977518_132977658_132977959_132978117_132978234_132978412_132978652_132978759_132978921_132979085_132979169_132979283_132979365_132979440_132979710_132979788_132979962
ENSMUSG00000028863.14_0	chr4	+	1173	7	FSM	ENSMUSG00000028863.14	ENSMUST00000154689.8	4550	7	28	3349	-2	0	multi-exon	TRUE	canonical	3	173	junction_5	63.7427555796648	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCAGCTGCCTCTTT	NA	False	NA	40	True	ACTAAA	-16	NA	124978954	125003682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125002115_125002150_125003091
ENSMUSG00000028863.14_1	chr4	+	860	6	FSM	ENSMUSG00000028863.14	ENSMUST00000055213.11	872	6	11	1	-2	-1	multi-exon	FALSE	canonical	3	84	junction_5	98.9605982196955	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGGGCAGCTGCCTCTT	NA	False	NA	39	True	ACTAAA	-15	NA	124978954	125003681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125003369
ENSMUSG00000028863.14_2	chr4	+	2316	5	ISM	ENSMUSG00000028863.14	ENSMUST00000106171.9	667	8	-103	4657	-6	1292	5prime_fragment	FALSE	canonical	3	291	junction_3	21.9146070008111	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGAGGGCGTCAGATGTC	NA	False	NA	NA	False	NA	NA	NA	124978950	124998588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631
ENSMUSG00000028863.14_23	chr4	+	3093	1	ISM	ENSMUSG00000028863.14	ENSMUST00000154689.8	4550	7	25008	4	2166	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAACTGCTGATACTG	NA	False	NA	NA	False	NA	NA	NA	125003934	125007027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_125003900_125007000
ENSMUSG00000028863.14_3	chr4	+	999	6	NIC	ENSMUSG00000028863.14	novel	872	6	NA	NA	-2	377	combination_of_known_junctions	FALSE	canonical	3	30	junction_5	120.208818312135	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGGCATCAACAGATTC	NA	False	NA	12	True	ATTAAA	-18	NA	124978954	124997673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_124997222
ENSMUSG00000028863.14_4	chr4	+	1229	8	FSM	ENSMUSG00000028863.14	ENSMUST00000184205.8	1054	8	-2	-173	-2	-2	multi-exon	FALSE	canonical	3	93	junction_6	102.612805025016	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATGGGCAGCTGCCTCT	NA	False	NA	38	True	ACTAAA	-14	NA	124978954	125003680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125001444_125001503_125002115_125002150_125003091
ENSMUSG00000028865.15_0	chr4	+	897	6	FSM	ENSMUSG00000028865.15	ENSMUST00000105910.2	986	6	85	4	85	-4	multi-exon	FALSE	canonical	3	29	junction_1	9.2736184954957	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTCCTGACCTATGTCT	NA	False	NA	16	True	AATAAA	-18	NA	132948205	132951862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132948379_132948753_132948916_132949015_132949088_132949479_132949525_132950913_132951059_132951562
ENSMUSG00000028865.15_2	chr4	+	1275	5	NIC	ENSMUSG00000028865.15	novel	986	6	NA	NA	81	-5	intron_retention	FALSE	canonical	3	38	junction_4	6.80073525436772	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATTCCTGACCTATGTC	NA	False	NA	15	True	AATAAA	-17	NA	132948201	132951861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_132948916_132949015_132949088_132949479_132949525_132950913_132951059_132951562
ENSMUSG00000028865.15_3	chr4	+	1780	4	FSM	ENSMUSG00000028865.15	ENSMUST00000134713.2	828	4	-648	-304	76	-9	multi-exon	FALSE	canonical	3	45	junction_3	5.43650214343336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCATGATTCCTGACCTA	NA	False	NA	11	True	AATAAA	-13	NA	132948196	132951857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132948916_132949015_132949088_132949479_132949525_132950913
ENSMUSG00000028868.14_24	chr4	+	2362	1	ISM	ENSMUSG00000028868.14	ENSMUST00000084241.12	5642	9	66881	9	8368	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTCACCTTTGGTGTC	6548	False	NA	35	True	GATAAA	-13	NA	132924696	132927058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_132924700_132927100
ENSMUSG00000028868.14_4	chr4	+	5568	9	FSM	ENSMUSG00000028868.14	ENSMUST00000084241.12	5642	9	46	28	11	-28	multi-exon	FALSE	canonical	3	420	junction_8	37.0776212829248	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAAAGTCTTTGTAGTCA	NA	False	NA	16	True	TTTAAA	-21	NA	132857861	132927039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132921706_132922219_132923027
ENSMUSG00000028868.14_5	chr4	+	5565	9	NIC	ENSMUSG00000028868.14	novel	5642	9	NA	NA	11	-26	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	151.493347626224	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTCTTTGTAGTCACT	NA	False	NA	18	True	TTTAAA	-23	NA	132857861	132927041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_132858035_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132921706_132922219_132923027
ENSMUSG00000028869.14_0	chr4	+	2319	16	FSM	ENSMUSG00000028869.14	ENSMUST00000030684.8	2366	16	36	11	-30	-11	multi-exon	FALSE	canonical	3	650	junction_4	51.4673575083168	982	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATATGCCATTAGGAAC	NA	False	NA	13	True	ATTAAA	-7	NA	124923820	124949158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
ENSMUSG00000028873.17_0	chr4	-	1511	11	NNC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	17	-10	at_least_one_novel_splicesite	FALSE	canonical	3	207	junction_10	436.918573649599	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAAGTCAGTCCTCGGT	NA	False	NA	-20	True	AATAAA	-16	NA	124830693	124812267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381_124830522_124830609
ENSMUSG00000028873.17_2	chr4	-	1581	10	FSM	ENSMUSG00000028873.17	ENSMUST00000084296.10	1626	10	37	8	-7	-8	multi-exon	FALSE	canonical	3	1430	junction_6	123.940846105444	1524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTCAGTCCTCGGTCA	NA	False	NA	-18	True	AATAAA	-18	NA	124830673	124812265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
ENSMUSG00000028876.8_8	chr4	+	2951	6	ISM	ENSMUSG00000028876.8	ENSMUST00000149146.2	4660	15	27854	2	14251	-2	3prime_fragment	FALSE	canonical	1	1	junction_3	2.0591260281974	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTGTGTGTCCTTGTT	2889	False	NA	17	True	AATAAA	-19	NA	124807445	124811591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_124807508_124807717_124807922_124808155_124808306_124808473_124808668_124809071_124809228_124809406
ENSMUSG00000028878.12_0	chr4	-	2928	8	FSM	ENSMUSG00000028878.12	ENSMUST00000097856.10	1863	8	-32	-1033	-32	-5	multi-exon	FALSE	canonical	3	35	junction_3	31.9367998345712	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGCATGTTGTGATTC	NA	False	NA	-5	True	AATAAA	-14	NA	132649836	132626528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
ENSMUSG00000028878.12_1	chr4	-	3024	9	FSM	ENSMUSG00000028878.12	ENSMUST00000030696.11	3053	9	22	7	22	-7	multi-exon	FALSE	canonical	3	69	junction_4	24.0676130931175	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGATGCATGTTGTGAT	NA	False	NA	-7	True	AATAAA	-12	NA	132649847	132626530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132638002_132638090_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
ENSMUSG00000028878.12_3	chr4	-	1605	1	ISM	ENSMUSG00000028878.12	ENSMUST00000030696.11	3053	9	21734	7	20085	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGATGCATGTTGTGAT	NA	False	NA	-7	True	AATAAA	-12	NA	132628135	132626530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132626500_132628100
ENSMUSG00000028879.5_0	chr4	-	2298	9	FSM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	66	570	66	-570	multi-exon	FALSE	canonical	3	172	junction_5	25.18928343562	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTTTTGTAGTTATTT	6159	False	NA	-18	True	AATAAA	-6	NA	132611754	132581381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132582870_132584610_132584694_132585729_132585803_132587854_132587961_132590136_132590181_132590469_132590608_132595478_132595579_132598898_132598969_132611558
ENSMUSG00000028879.5_1	chr4	-	1256	1	ISM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	29192	561	7943	-561	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGTTATTTTTATGAGTT	NA	False	NA	-9	True	AATAAA	-15	NA	132582628	132581372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132581400_132582600
ENSMUSG00000028879.5_2	chr4	-	4067	8	NIC	ENSMUSG00000028879.5	novel	2934	9	NA	NA	45	-563	intron_retention	FALSE	canonical	3	172	junction_4	25.3473824273507	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGTTATTTTTATGAG	6138	False	NA	-11	True	AATAAA	-13	NA	132611775	132581374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_132584694_132585729_132585803_132587854_132587961_132590136_132590181_132590469_132590608_132595478_132595579_132598898_132598969_132611558
ENSMUSG00000028882.14_0	chr4	-	1997	7	FSM	ENSMUSG00000028882.14	ENSMUST00000105919.2	1090	7	-11	-896	0	-2	multi-exon	FALSE	canonical	3	27	junction_1	56.674509261219	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGTATGGTCTTGAGT	NA	False	NA	-8	True	ATTAAA	-14	NA	132570445	132554241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132555515_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
ENSMUSG00000028882.14_1	chr4	-	2000	7	FSM	ENSMUSG00000028882.14	ENSMUST00000030702.14	2037	7	35	2	0	-2	multi-exon	FALSE	canonical	3	165	junction_6	9.9121138007995	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGTATGGTCTTGAGT	NA	False	NA	-8	True	ATTAAA	-14	NA	132570445	132554241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
ENSMUSG00000028882.14_10	chr4	-	1893	6	ISM	ENSMUSG00000028882.14	ENSMUST00000030702.14	2037	7	2494	2	2448	-2	3prime_fragment	FALSE	canonical	3	168	junction_1	9.56242647030554	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGTATGGTCTTGAGT	NA	False	NA	-8	True	ATTAAA	-14	NA	132567986	132554241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954
ENSMUSG00000028882.14_14	chr4	-	1611	4	ISM	ENSMUSG00000028882.14	ENSMUST00000030702.14	2037	7	10146	4	-48	-4	3prime_fragment	FALSE	canonical	3	168	junction_1	5.09901951359278	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATTGGGTATGGTCTTGA	7162	False	NA	-10	True	ATTAAA	-12	NA	132560334	132554243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207
ENSMUSG00000028882.14_2	chr4	-	885	1	ISM	ENSMUSG00000028882.14	ENSMUST00000030702.14	2037	7	15354	2	5160	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGTATGGTCTTGAGT	NA	False	NA	-8	True	ATTAAA	-14	NA	132555126	132554241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132554200_132555100
ENSMUSG00000028884.15_0	chr4	+	1530	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	12	271	12	-271	multi-exon	FALSE	canonical	3	1317	junction_7	93.1791788706039	1321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGCTTCTGAAATGTTGG	NA	False	NA	24	True	GATAAA	-14	NA	132495657	132505792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
ENSMUSG00000028885.9_2	chr4	-	1901	8	FSM	ENSMUSG00000028885.9	ENSMUST00000030709.9	2006	8	86	19	86	-19	multi-exon	FALSE	canonical	3	69	junction_5	8.56666534317997	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGTTTTGCAACAGTGC	NA	False	NA	-20	True	AATAAA	-12	NA	132484477	132460295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132461071_132465329_132465464_132465547_132465729_132466939_132467113_132468698_132468843_132472398_132472497_132473788_132474003_132484295
ENSMUSG00000028885.9_5	chr4	-	1770	7	NIC	ENSMUSG00000028885.9	novel	2006	8	NA	NA	70	-22	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	32.4448249597169	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTTGGTTTTGCAACAG	NA	False	NA	-23	True	AATAAA	-9	NA	132484493	132460298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_132461071_132465329_132465464_132465547_132465729_132466939_132467113_132472398_132472497_132473788_132474003_132484295
ENSMUSG00000028885.9_8	chr4	-	1120	6	NIC	ENSMUSG00000028885.9	novel	2006	8	NA	NA	70	-5159	intron_retention	FALSE	canonical	3	69	junction_3	10.1311401135312	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGGGGTCACACCGTGGA	NA	False	NA	NA	False	CATAAA	-16	NA	132484493	132465435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_132465729_132466939_132467113_132468698_132468843_132472398_132472497_132473788_132474003_132484295
ENSMUSG00000028886.16_0	chr4	+	2498	17	FSM	ENSMUSG00000028886.16	ENSMUST00000081726.13	5160	17	30	2632	-3	-2	multi-exon	FALSE	canonical	3	62	junction_15	5.48542101848163	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTCAGAAGTTCTGTCCC	NA	False	NA	26	True	NA	NA	NA	132366386	132449444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
ENSMUSG00000028886.16_1	chr4	+	2627	18	NIC	ENSMUSG00000028886.16	novel	5186	18	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	7	junction_7	22.5258021989425	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCAGAAGTTCTGTCCCA	NA	False	NA	27	True	NA	NA	NA	132366396	132449445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132408066_132408205_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
ENSMUSG00000028886.16_12	chr4	+	885	1	ISM	ENSMUSG00000028886.16	ENSMUST00000020197.14	4976	15	84832	0	19478	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACGGTTTTCTCCTTTGTC	NA	False	NA	18	True	AATAAA	-14	NA	132451188	132452073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_132451200_132452100
ENSMUSG00000028889.18_0	chr4	+	1529	5	FSM	ENSMUSG00000028889.18	ENSMUST00000102628.11	1634	5	98	7	98	-7	multi-exon	FALSE	canonical	3	475	junction_1	43.7121264639459	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACAGTTGTAAATGGTT	1632	False	NA	36	True	ATTAAA	-11	NA	124744569	124749028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124744960_124745485_124745601_124745692_124745813_124747666_124747810_124748267
ENSMUSG00000028889.18_5	chr4	+	2054	4	FSM	ENSMUSG00000028889.18	ENSMUST00000144851.3	724	4	-573	-757	99	-7	multi-exon	FALSE	canonical	3	495	junction_1	37.6061460697879	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACAGTTGTAAATGGTT	1633	False	NA	36	True	ATTAAA	-11	NA	124744570	124749028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124745601_124745692_124745813_124747666_124747810_124748267
ENSMUSG00000028890.14_0	chr4	+	2700	11	FSM	ENSMUSG00000028890.14	ENSMUST00000030723.3	7631	11	22	4909	-11	-4488	multi-exon	FALSE	canonical	3	78	junction_5	11.1103555298649	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGTGTGGTTTCCATCA	341	False	NA	8	True	CATAAA	-12	NA	124696363	124738684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124696437_124698452_124698909_124713997_124714237_124715020_124715153_124718079_124718154_124718838_124718976_124724911_124724990_124731490_124731594_124732111_124732711_124736320_124736385_124737939
ENSMUSG00000028890.14_1	chr4	+	786	2	FSM	ENSMUSG00000028890.14	ENSMUST00000147452.2	781	2	-8	3	-8	-3	multi-exon	FALSE	canonical	3	116	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAGTGAATTCATGTTT	344	False	NA	1	True	AATAAA	-12	NA	124696366	124699168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124696437_124698452
ENSMUSG00000028890.14_21	chr4	+	2030	1	ISM	ENSMUSG00000028890.14	ENSMUST00000106193.8	7554	12	45243	3	44669	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTGGTAGTACATGTGG	2101	False	NA	NA	False	ATTAAA	-32	NA	124741139	124743169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_124741100_124743200
ENSMUSG00000028890.14_3	chr4	+	2691	11	NNC	ENSMUSG00000028890.14	novel	7631	11	NA	NA	-5	-4488	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_9	26.0967430918113	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGTGTGGTTTCCATCA	347	False	NA	8	True	CATAAA	-12	NA	124696369	124738684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_124696437_124698452_124698909_124713997_124714237_124715020_124715153_124718079_124718154_124718838_124718976_124724911_124724990_124731490_124731594_124732111_124732711_124736323_124736385_124737939
ENSMUSG00000028893.9_0	chr4	-	3443	10	FSM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	31	1	31	-1	multi-exon	TRUE	canonical	3	666	junction_4	59.9637750728526	1729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTGCTAATGGGATGT	NA	False	NA	-32	True	AATAAA	-21	NA	132237781	132219343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227275_132229873_132229940_132237374
ENSMUSG00000028893.9_1	chr4	-	1458	1	ISM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	17011	1	17011	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTGCTAATGGGATGT	NA	False	NA	-32	True	AATAAA	-21	NA	132220801	132219343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132219300_132220800
ENSMUSG00000028894.19_0	chr4	+	3792	24	FSM	ENSMUSG00000028894.19	ENSMUST00000094782.10	3809	24	14	3	6	3	multi-exon	FALSE	non_canonical	1	6	junction_2	64.214933278441	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTATGGTTCTCTCTTTT	NA	False	NA	19	True	AATATA	-27	NA	124635656	124695301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124635710_124636256_124636384_124636728_124636824_124637428_124637527_124637666_124637697_124639864_124639976_124645104_124645486_124671133_124671231_124674163_124674332_124676182_124676285_124677680_124677796_124678103_124678221_124678965_124679154_124680310_124680423_124681264_124681375_124682861_124682998_124685298_124685410_124685985_124686149_124686966_124687203_124689148_124689263_124691617_124691703_124692044_124692173_124693560_124693673_124694498
ENSMUSG00000028894.19_12	chr4	+	2975	18	ISM	ENSMUSG00000028894.19	ENSMUST00000094782.10	3809	24	9765	3	9737	3	3prime_fragment	FALSE	canonical	3	118	junction_11	23.4933547256022	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTATGGTTCTCTCTTTT	NA	False	NA	19	True	AATATA	-27	NA	124645407	124695301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_124645486_124671133_124671231_124674163_124674332_124676182_124676285_124677680_124677796_124678103_124678221_124678965_124679154_124680310_124680423_124681264_124681375_124682861_124682998_124685298_124685410_124685985_124686149_124686966_124687203_124689148_124689263_124691617_124691703_124692044_124692173_124693560_124693673_124694498
ENSMUSG00000028896.14_0	chr4	-	2228	10	FSM	ENSMUSG00000028896.14	ENSMUST00000084250.11	2285	10	50	7	4	-3	multi-exon	FALSE	canonical	3	372	junction_9	35.0019399815087	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCTTTGTTTTTATG	5489	False	NA	-17	True	AATAAA	-14	NA	132073008	132059236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
ENSMUSG00000028896.14_16	chr4	-	2178	9	ISM	ENSMUSG00000028896.14	ENSMUST00000084250.11	2285	10	5739	7	-76	-3	3prime_fragment	FALSE	canonical	3	388	junction_3	30.7286511256189	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCTTTGTTTTTATG	8104	False	NA	-17	True	AATAAA	-14	NA	132067319	132059236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235
ENSMUSG00000028896.14_22	chr4	-	2492	13	NIC	ENSMUSG00000028896.14	novel	2326	11	NA	NA	-28	-3	combination_of_known_splicesites	FALSE	canonical	3	24	junction_10	276.521347377658	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCTTTGTTTTTATG	NA	False	NA	-17	True	AATAAA	-14	NA	132080944	132059236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132075310_132075432_132079432_132079555_132079973_132080010_132080907
ENSMUSG00000028896.14_7	chr4	-	2264	11	FSM	ENSMUSG00000028896.14	ENSMUST00000030726.13	2278	11	11	3	-2	-3	multi-exon	FALSE	canonical	3	61	junction_9	136.55039362814	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCTTTGTTTTTATG	5492	False	NA	-17	True	AATAAA	-14	NA	132073005	132059236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132072956
ENSMUSG00000028896.14_9	chr4	-	918	1	ISM	ENSMUSG00000028896.14	ENSMUST00000084250.11	2285	10	12904	7	7089	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCTTTGTTTTTATG	NA	False	NA	-17	True	AATAAA	-14	NA	132060154	132059236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132059200_132060200
ENSMUSG00000028898.16_0	chr4	-	1088	9	FSM	ENSMUSG00000028898.16	ENSMUST00000030730.14	1130	9	40	2	-4	0	multi-exon	FALSE	canonical	3	451	junction_8	39.2324801663112	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGCTTCTTCAACTGT	2356	False	NA	-2	True	AATAAA	-15	NA	132056809	132039075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
ENSMUSG00000028898.16_1	chr4	-	999	8	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	168.067042016705	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGCTTCTTCAACTGT	2347	False	NA	-2	True	AATAAA	-15	NA	132056818	132039075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132056663
ENSMUSG00000028898.16_3	chr4	-	1225	10	FSM	ENSMUSG00000028898.16	ENSMUST00000147652.8	1017	10	-108	-100	-3	0	multi-exon	FALSE	canonical	3	16	junction_6	205.952229868128	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGCTTCTTCAACTGT	2357	False	NA	-2	True	AATAAA	-15	NA	132056808	132039075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132052662_132052801_132053256_132053357_132055779_132055878_132056663
ENSMUSG00000028899.12_2	chr4	+	1311	6	FSM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	34	2442	-4	612	multi-exon	FALSE	canonical	3	439	junction_3	32.7987804651331	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATGTTAGTGTCCATAG	NA	False	NA	21	True	AATAAA	-17	NA	132001719	132020635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
ENSMUSG00000028901.14_1	chr4	-	1597	1	ISM	ENSMUSG00000028901.14	ENSMUST00000168553.8	6523	10	27940	1933	10352	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTATAAGTACTAAACGC	8471	False	NA	NA	False	AATAAA	-18	NA	131951865	131950268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_131950300_131951900
ENSMUSG00000028901.14_10	chr4	-	3876	4	ISM	ENSMUSG00000028901.14	ENSMUST00000030733.9	2485	9	19729	-2059	2783	-14	3prime_fragment	FALSE	canonical	3	57	junction_3	2.05480466765633	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTATGTATAAGTACTAAAC	8641	False	NA	NA	False	AATAAA	-16	NA	131959434	131950270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322
ENSMUSG00000028901.14_11	chr4	-	4522	9	NIC	ENSMUSG00000028901.14	novel	1925	10	NA	NA	27	-18	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	25.6795151823394	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTCTATGTATAAGTACT	1939	False	NA	NA	False	AATAAA	-12	NA	131988886	131950274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131978985_131979144_131988801
ENSMUSG00000028901.14_2	chr4	-	1890	10	FSM	ENSMUSG00000028901.14	ENSMUST00000105964.2	1925	10	35	0	35	0	multi-exon	FALSE	canonical	3	10	junction_9	18.219511993573	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	1947	False	NA	-58	True	NA	NA	NA	131988878	131952981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131988801
ENSMUSG00000028901.14_4	chr4	-	1823	9	FSM	ENSMUSG00000028901.14	ENSMUST00000030733.9	2485	9	19	643	19	9	multi-exon	FALSE	canonical	3	57	junction_3	6.23372881989584	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAACAAACAAAAAAAA	3584	False	NA	-49	True	NA	NA	NA	131979144	131952972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985
ENSMUSG00000028901.14_5	chr4	-	3734	3	ISM	ENSMUSG00000028901.14	ENSMUST00000030733.9	2485	9	20751	-2051	3805	-22	3prime_fragment	FALSE	canonical	3	59	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTACTGTCTATGTATAAG	9663	False	NA	NA	False	AATAAA	-8	NA	131958412	131950278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_131953774_131955182_131955306_131958296
ENSMUSG00000028901.14_8	chr4	-	1927	10	NNC	ENSMUSG00000028901.14	novel	1925	10	NA	NA	25	30	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_9	16.1528195757556	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAACTACAAAATCTCGTT	1937	False	NA	-28	True	NA	NA	NA	131988888	131952951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979141_131988801
ENSMUSG00000028901.14_9	chr4	-	1977	11	FSM	ENSMUSG00000028901.14	ENSMUST00000105965.8	4632	11	-70	2725	11	0	multi-exon	FALSE	canonical	2	6	junction_10	24.0074988284911	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	1923	False	NA	-58	True	NA	NA	NA	131988902	131952981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131979741_131979805_131988801
ENSMUSG00000028902.5_3	chr4	+	1711	17	FSM	ENSMUSG00000028902.5	ENSMUST00000030734.5	1820	17	64	45	-43	-45	multi-exon	FALSE	canonical	3	1027	junction_12	104.342509913266	1132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAAGCCAGCCCTTGT	NA	False	NA	6	True	ATTAAA	-13	NA	124608632	124626208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
ENSMUSG00000028906.18_0	chr4	-	5107	19	NIC	ENSMUSG00000028906.18	novel	5074	18	NA	NA	13	-1	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	31.5274229054918	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGCC	5322	False	NA	NA	False	AATAAA	-4	NA	131802619	131650740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131690234_131690298_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
ENSMUSG00000028906.18_1	chr4	-	5230	19	NIC	ENSMUSG00000028906.18	novel	5303	21	NA	NA	-14	-1	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	34.6963903911176	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGCC	NA	False	NA	NA	False	AATAAA	-4	NA	131776416	131650740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131690234_131690298_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734750_131776181
ENSMUSG00000028906.18_17	chr4	-	5621	19	NIC	ENSMUSG00000028906.18	novel	5141	18	NA	NA	-18	-1	combination_of_known_junctions	FALSE	canonical	3	36	junction_5	34.7035060668707	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGCC	NA	False	NA	NA	False	AATAAA	-4	NA	131776420	131650740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734750_131776181
ENSMUSG00000028906.18_2	chr4	-	5170	18	FSM	ENSMUSG00000028906.18	ENSMUST00000084253.10	5141	18	-31	2	-18	-2	multi-exon	FALSE	canonical	3	49	junction_17	28.8854077694417	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	AATAAA	-3	NA	131776420	131650741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734750_131776181
ENSMUSG00000028906.18_23	chr4	-	5497	19	NIC	ENSMUSG00000028906.18	novel	5074	18	NA	NA	9	-2	combination_of_known_junctions	FALSE	canonical	3	36	junction_5	31.5264439267525	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAAGC	5318	False	NA	NA	False	AATAAA	-3	NA	131802623	131650741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
ENSMUSG00000028906.18_4	chr4	-	1988	1	ISM	ENSMUSG00000028906.18	ENSMUST00000155990.8	3120	6	11794	17	11794	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGCC	NA	False	NA	NA	False	AATAAA	-4	NA	131652728	131650740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_131650700_131652700
ENSMUSG00000028906.18_6	chr4	-	5041	18	FSM	ENSMUSG00000028906.18	ENSMUST00000146021.8	5074	18	16	17	-13	-1	multi-exon	FALSE	canonical	3	68	junction_5	24.1593613426437	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGCC	5325	False	NA	NA	False	AATAAA	-4	NA	131802616	131650740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
ENSMUSG00000028906.18_7	chr4	-	5560	20	NIC	ENSMUSG00000028906.18	novel	5235	21	NA	NA	4	-7	combination_of_known_junctions	FALSE	canonical	3	36	junction_5	36.2164162896367	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACTTTAAAAAAAAAAAAA	5313	False	NA	NA	False	NA	NA	NA	131802628	131650746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131690234_131690298_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
ENSMUSG00000028907.8_1	chr4	-	933	8	FSM	ENSMUSG00000028907.8	ENSMUST00000030738.8	1603	8	18	652	18	-15	multi-exon	FALSE	canonical	3	1259	junction_4	134.593264834372	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGCTTGGTCTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	124587375	124572604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ENSMUSG00000028907.8_29	chr4	-	178	1	ISM	ENSMUSG00000028907.8	ENSMUST00000153088.2	4008	6	11451	3109	11451	-3109	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAAATGAAT	NA	False	NA	NA	False	NA	NA	NA	124575876	124575698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_124575700_124575900
ENSMUSG00000028909.18_0	chr4	-	5495	30	FSM	ENSMUSG00000028909.18	ENSMUST00000105987.9	5484	30	-11	0	-11	0	multi-exon	TRUE	canonical	1	1	junction_25	2.06954015008602	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTGGCTCTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	131565610	131495767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_131496872_131497063_131497200_131498477_131498636_131498757_131498884_131499814_131499956_131501517_131501692_131503515_131503666_131504092_131504229_131506333_131506489_131507173_131507291_131507385_131507484_131508140_131508178_131514618_131514696_131515076_131515153_131515685_131515877_131520828_131520987_131525163_131525303_131526022_131526060_131526828_131527103_131529838_131529942_131530253_131530456_131530689_131530800_131535522_131535832_131546104_131546399_131546839_131547015_131547272_131547389_131547492_131547575_131548018_131548291_131551142_131551275_131565394
ENSMUSG00000028910.13_0	chr4	+	1315	10	FSM	ENSMUSG00000028910.13	ENSMUST00000030742.11	1337	10	15	7	-8	3	multi-exon	FALSE	canonical	3	105	junction_6	17.6243378301319	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTACAGTCATGCGTGT	NA	False	NA	26	True	AATAAA	-26	NA	131570795	131595090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
ENSMUSG00000028910.13_2	chr4	+	1348	11	NIC	ENSMUSG00000028910.13	novel	1337	10	NA	NA	9	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	55.4697214703662	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCATGCGTGTGGAGGA	NA	False	NA	32	True	AATAAA	-32	NA	131570824	131595096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131588487_131588544_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
ENSMUSG00000028910.13_4	chr4	+	2220	9	NIC	ENSMUSG00000028910.13	novel	1337	10	NA	NA	-7	-3	intron_retention	FALSE	canonical	3	105	junction_5	17.0861786248418	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGATGAAGAGTACAGTCAT	NA	False	NA	20	True	AATAAA	-20	NA	131570796	131595084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
ENSMUSG00000028911.17_0	chr4	+	2220	6	FSM	ENSMUSG00000028911.17	ENSMUST00000053819.6	2257	6	31	6	31	-6	multi-exon	FALSE	canonical	3	354	junction_1	33.990586932267	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAATTTCACCGCGCTTG	NA	False	NA	16	True	AATAAA	-16	NA	131600958	131629011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_131601182_131618517_131618661_131619391_131619505_131624967_131625183_131627372_131627463_131627575
ENSMUSG00000028911.17_2	chr4	+	2816	9	NIC	ENSMUSG00000028911.17	novel	2257	6	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	56	junction_3	167.217625790465	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAATTTCACCGCGCTTG	NA	False	NA	16	True	AATAAA	-16	NA	131600927	131629011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_131601182_131611586_131611794_131612619_131612804_131613441_131613616_131618517_131618661_131619391_131619505_131624967_131625183_131627372_131627463_131627575
ENSMUSG00000028911.17_40	chr4	+	1150	1	ISM	ENSMUSG00000028911.17	ENSMUST00000053819.6	2257	6	26934	6	15343	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAATTTCACCGCGCTTG	NA	False	NA	16	True	AATAAA	-16	NA	131627861	131629011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_131627900_131629000
ENSMUSG00000028914.14_1	chr4	+	3671	9	NIC	ENSMUSG00000028914.14	novel	3897	9	NA	NA	-42	-33	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	54.6601717432355	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCAAAAATAAAGCTGTGA	NA	False	NA	6	True	AATAAA	-19	NA	141521112	141543254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_141521298_141523748_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
ENSMUSG00000028914.14_2	chr4	+	3676	9	FSM	ENSMUSG00000028914.14	ENSMUST00000030747.11	3897	9	192	29	-40	-29	multi-exon	FALSE	canonical	3	161	junction_8	15.5060472074607	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAAAGCTGTGATTGT	NA	False	NA	10	True	AATAAA	-23	NA	141521114	141543258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_141521298_141523745_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
ENSMUSG00000028917.15_0	chr4	-	4085	19	ISM	ENSMUSG00000028917.15	ENSMUST00000030751.5	4154	20	769	3	-12	-3	3prime_fragment	FALSE	canonical	3	16	junction_18	6.60363723196225	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTTGTCGCTGACCCT	7299	False	NA	-4	True	AATAAA	-17	NA	141391441	141353047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141354019_141355061_141355179_141355259_141355440_141355591_141355752_141356391_141356458_141356760_141356952_141357220_141357354_141357882_141357972_141358302_141358368_141358600_141358692_141358820_141358891_141359023_141359888_141361563_141361790_141366986_141367174_141368727_141368816_141369305_141369406_141369716_141369827_141369960_141370068_141391171
ENSMUSG00000028917.15_2	chr4	-	4151	20	FSM	ENSMUSG00000028917.15	ENSMUST00000084203.11	4136	20	-18	3	-18	-3	multi-exon	FALSE	canonical	2	5	junction_14	9.89893527949294	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTTGTCGCTGACCCT	7293	False	NA	-4	True	AATAAA	-17	NA	141391447	141353047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141354019_141355061_141355179_141355259_141355440_141355591_141355752_141356391_141356458_141356760_141356952_141357220_141357354_141357882_141357972_141358302_141358368_141358600_141358692_141358820_141358891_141359023_141359888_141361563_141361790_141364735_141364796_141366986_141367174_141368727_141368816_141369305_141369406_141369716_141369827_141369960_141370068_141391171
ENSMUSG00000028917.15_20	chr4	-	1649	6	ISM	ENSMUSG00000028917.15	ENSMUST00000084203.11	4136	20	34507	10	-75	-10	3prime_fragment	FALSE	canonical	3	22	junction_3	5.84465567848098	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGCTGAGACTTGTCGC	NA	False	NA	-11	True	AATAAA	-10	NA	141356922	141353054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141354019_141355061_141355179_141355259_141355440_141355591_141355752_141356391_141356458_141356760
ENSMUSG00000028917.15_5	chr4	-	2864	12	ISM	ENSMUSG00000028917.15	ENSMUST00000084203.11	4136	20	31676	2	-1395	-2	3prime_fragment	FALSE	canonical	3	22	junction_3	4.8820805753082	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTTGTCGCTGACCCTC	NA	False	NA	-3	True	AATAAA	-18	NA	141359753	141353046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141354019_141355061_141355179_141355259_141355440_141355591_141355752_141356391_141356458_141356760_141356952_141357220_141357354_141357882_141357972_141358302_141358368_141358600_141358692_141358820_141358891_141359023
ENSMUSG00000028917.15_8	chr4	-	3777	17	ISM	ENSMUSG00000028917.15	ENSMUST00000030751.5	4154	20	22315	3	178	-3	3prime_fragment	FALSE	canonical	3	20	junction_13	5.52232684201144	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTTGTCGCTGACCCT	NA	False	NA	-4	True	AATAAA	-17	NA	141369895	141353047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141354019_141355061_141355179_141355259_141355440_141355591_141355752_141356391_141356458_141356760_141356952_141357220_141357354_141357882_141357972_141358302_141358368_141358600_141358692_141358820_141358891_141359023_141359888_141361563_141361790_141366986_141367174_141368727_141368816_141369305_141369406_141369716
ENSMUSG00000028919.12_1	chr4	+	3510	17	NIC	ENSMUSG00000028919.12	novel	663	4	NA	NA	-60	-7	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	14.2531520636665	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTATTTCATGTAGCAT	388	False	NA	7	True	TTTAAA	-11	NA	140966900	140984868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_140967182_140967942_140968056_140973485_140973921_140974259_140974542_140974688_140974798_140974864_140974942_140975157_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
ENSMUSG00000028919.12_10	chr4	+	2128	11	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	5069	1	1012	-1	3prime_fragment	FALSE	canonical	3	37	junction_1	11.8135515404979	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCATGTAGCATCTGCTT	3260	False	NA	13	True	TTTAAA	-17	NA	140975248	140984874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
ENSMUSG00000028919.12_11	chr4	+	1764	10	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	5925	386	1868	-386	3prime_fragment	FALSE	canonical	3	47	junction_2	10.3279555898864	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTCCTAGTTGCCAAGA	4116	False	NA	1	True	ATTAAA	-12	NA	140976104	140984489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
ENSMUSG00000028919.12_13	chr4	+	1343	5	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	8075	5	4018	-5	3prime_fragment	FALSE	canonical	3	59	junction_1	6.67083203206317	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTTCATGTAGCATCT	852	False	NA	9	True	TTTAAA	-13	NA	140978254	140984870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
ENSMUSG00000028919.12_14	chr4	+	1405	4	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	11136	67	7079	-67	3prime_fragment	FALSE	canonical	3	67	junction_2	3.85861230093008	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATACATCTTCCCTGTT	3913	False	NA	0	True	NA	NA	NA	140981315	140984808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_140981760_140982011_140982092_140983614_140983720_140984032
ENSMUSG00000028919.12_15	chr4	+	1011	3	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	11847	2	7790	-2	3prime_fragment	FALSE	canonical	3	67	junction_1	4.5	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCATGTAGCATCTGCT	4624	False	NA	12	True	TTTAAA	-16	NA	140982026	140984873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_140982092_140983614_140983720_140984032
ENSMUSG00000028919.12_2	chr4	+	3771	19	NIC	ENSMUSG00000028919.12	novel	663	4	NA	NA	-63	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	19.9109126974241	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTTCATGTAGCATCT	385	False	NA	9	True	TTTAAA	-13	NA	140966897	140984870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_140967182_140967942_140968056_140972128_140972278_140973256_140973364_140973485_140973921_140974259_140974542_140974688_140974798_140974864_140974942_140975157_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
ENSMUSG00000028919.12_3	chr4	+	3651	18	NIC	ENSMUSG00000028919.12	novel	663	4	NA	NA	-50	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	17.2438244298896	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTTCATGTAGCATCT	398	False	NA	9	True	TTTAAA	-13	NA	140966910	140984870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_140967182_140967942_140968056_140972128_140972278_140973485_140973921_140974259_140974542_140974688_140974798_140974864_140974942_140975157_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
ENSMUSG00000028920.10_1	chr4	+	5895	10	FSM	ENSMUSG00000028920.10	ENSMUST00000030757.10	5934	10	28	11	19	-11	multi-exon	FALSE	canonical	3	178	junction_2	13.4283650402542	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAATTGTCTTAACTGTT	NA	False	NA	4	True	AATAAA	-8	NA	140875251	140931362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_140875491_140895023_140895289_140898134_140898252_140907708_140907844_140920975_140921130_140922491_140922603_140924793_140924891_140925352_140925410_140926240_140926358_140926759
ENSMUSG00000028920.10_16	chr4	+	5533	9	ISM	ENSMUSG00000028920.10	ENSMUST00000030757.10	5934	10	19923	11	19914	-11	3prime_fragment	FALSE	canonical	3	178	junction_1	14.0706920583175	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAATTGTCTTAACTGTT	NA	False	NA	4	True	AATAAA	-8	NA	140895146	140931362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_140895289_140898134_140898252_140907708_140907844_140920975_140921130_140922491_140922603_140924793_140924891_140925352_140925410_140926240_140926358_140926759
ENSMUSG00000028920.10_22	chr4	+	3227	1	ISM	ENSMUSG00000028920.10	ENSMUST00000030757.10	5934	10	52916	7	52907	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTCTTAACTGTTTTAT	3840	False	NA	8	True	AATAAA	-12	NA	140928139	140931366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_140928100_140931400
ENSMUSG00000028923.15_0	chr4	-	1861	8	FSM	ENSMUSG00000028923.15	ENSMUST00000030760.15	1906	8	39	6	-24	-6	multi-exon	FALSE	canonical	3	362	junction_3	45.6883855200484	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACATCTCAGATGGATAT	8524	False	NA	-16	True	AATAAA	-16	NA	140805629	140793828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
ENSMUSG00000028923.15_1	chr4	-	4152	7	NIC	ENSMUSG00000028923.15	novel	1906	8	NA	NA	-20	-6	intron_retention	TRUE	canonical	3	431	junction_1	26.7810048770061	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACATCTCAGATGGATAT	8528	False	NA	-16	True	AATAAA	-16	NA	140805625	140793828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_140794924_140795505_140795591_140797366_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
ENSMUSG00000028926.16_1	chr5	-	5303	15	FSM	ENSMUSG00000028926.16	ENSMUST00000030763.13	4851	15	-453	1	-399	-1	multi-exon	FALSE	canonical	0	0	junction_5	2.34846888896766	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCATCCTGGTATGTA	NA	False	NA	-6	True	AATAAA	-17	NA	5430650	4853391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_4856732_4938836_4938981_4944027_4944168_4972126_4972176_4999531_4999596_5060832_5060927_5086425_5086547_5142957_5143082_5153791_5153855_5185318_5185414_5245277_5245358_5277163_5277259_5298982_5299229_5423457_5423490_5430034
ENSMUSG00000028927.7_0	chr4	+	4732	16	FSM	ENSMUSG00000028927.7	ENSMUST00000030765.7	4774	16	31	11	31	-11	multi-exon	FALSE	canonical	3	23	junction_7	9.97463449622759	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGAAGCTACGCGGCTCT	NA	False	NA	-3	True	AATAAA	-22	NA	140633685	140679886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_140633861_140644883_140645068_140646618_140646692_140651624_140651687_140653446_140653565_140654403_140654530_140659375_140659555_140660057_140660162_140660483_140660596_140661926_140662035_140663830_140663983_140665230_140665376_140671752_140671847_140673988_140674075_140676522_140676652_140677001
ENSMUSG00000028927.7_4	chr4	+	3727	8	ISM	ENSMUSG00000028927.7	ENSMUST00000030765.7	4774	16	26818	6	9003	-6	3prime_fragment	FALSE	canonical	3	24	junction_3	9.73527144994333	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTACGCGGCTCTGGGTG	NA	False	NA	2	True	AATAAA	-27	NA	140660472	140679891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_140660596_140661926_140662035_140663830_140663983_140665230_140665376_140671752_140671847_140673988_140674075_140676522_140676652_140677001
ENSMUSG00000028927.7_5	chr4	+	1937	1	ISM	ENSMUSG00000028927.7	ENSMUST00000030765.7	4774	16	44297	9	4229	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGCTACGCGGCTCTGG	NA	False	NA	-1	True	AATAAA	-24	NA	140677951	140679888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_140678000_140679900
ENSMUSG00000028931.13_0	chr4	-	3541	15	FSM	ENSMUSG00000028931.13	ENSMUST00000030768.10	3597	15	56	0	11	0	multi-exon	TRUE	canonical	1	4	junction_13	3.43748840443313	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTTCTGATCTCTCCTTT	NA	False	NA	-5	True	AATAAA	-21	NA	152561990	152475201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152520261_152520395_152561857
ENSMUSG00000028931.13_2	chr4	-	3594	16	FSM	ENSMUSG00000028931.13	ENSMUST00000160884.9	3961	16	366	1	0	0	multi-exon	TRUE	canonical	1	3	junction_13	3.63684845252956	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTTCTGATCTCTCCTTT	NA	False	NA	-5	True	AATAAA	-21	NA	152562001	152475201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152519238_152519281_152520261_152520395_152561857
ENSMUSG00000028931.13_4	chr4	-	1422	16	FSM	ENSMUSG00000028931.13	ENSMUST00000105648.10	1799	16	23	354	7	122	multi-exon	FALSE	canonical	1	3	junction_13	3.92371705854991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCAAAGGGAAATCACTAT	NA	False	NA	NA	False	NA	NA	NA	152533290	152477385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152519238_152519281_152520261_152520395_152533134
ENSMUSG00000028932.9_3	chr5	+	1426	12	ISM	ENSMUSG00000028932.9	ENSMUST00000239497.2	1775	13	1481	0	1481	0	3prime_fragment	FALSE	canonical	3	1482	junction_9	138.585355743117	1280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTGTGTCAGTGCTTC	NA	False	NA	11	True	AATAAA	-7	NA	21991761	22008775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
ENSMUSG00000028933.12_2	chr5	-	2068	1	ISM	ENSMUSG00000028933.12	ENSMUST00000030773.12	3247	3	13939	7	1552	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACATTTCTATATTTCA	NA	False	NA	-19	True	AATACA	-4	NA	25896884	25894816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_25894800_25896900
ENSMUSG00000028933.12_4	chr5	-	3221	3	FSM	ENSMUSG00000028933.12	ENSMUST00000030773.12	3247	3	15	11	15	-11	multi-exon	FALSE	canonical	3	77	junction_1	2.5	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTAAAACATTTCTATAT	NA	False	NA	-23	True	NA	NA	NA	25910808	25894820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_25897827_25903248_25903331_25910675
ENSMUSG00000028936.16_0	chr4	+	459	4	FSM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	8	7	-6	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACCGGTGGTTTATC	NA	False	NA	9	True	AATAAA	-8	NA	152410317	152416930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
ENSMUSG00000028936.16_14	chr4	+	301	2	ISM	ENSMUSG00000028936.16	ENSMUST00000150485.2	576	4	2542	0	2465	0	3prime_fragment	FALSE	canonical	3	5596	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACCGGTGGTTTATC	NA	False	NA	9	True	AATAAA	-8	NA	152414478	152416930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152414586_152416736
ENSMUSG00000028936.16_15	chr4	+	1223	1	ISM	ENSMUSG00000028936.16	ENSMUST00000139685.8	2051	4	6978	4	5288	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGTCACTGTGCAAGG	NA	False	NA	25	True	ATTAAA	-15	NA	152417301	152418524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152417300_152418500
ENSMUSG00000028936.16_2	chr4	+	425	3	ISM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	1627	7	0	0	3prime_fragment	FALSE	canonical	3	5596	junction_2	103	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACCGGTGGTTTATC	NA	False	NA	9	True	AATAAA	-8	NA	152411936	152416930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152412043_152414460_152414586_152416736
ENSMUSG00000028937.15_0	chr4	+	1367	9	FSM	ENSMUSG00000028937.15	ENSMUST00000075363.10	1457	9	85	5	85	0	multi-exon	FALSE	canonical	3	360	junction_1	55.2466062306093	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATGAAGCCTAGGTGGT	NA	False	NA	12	True	AATAAA	-17	NA	152262675	152356304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
ENSMUSG00000028937.15_15	chr4	+	1570	9	FSM	ENSMUSG00000028937.15	ENSMUST00000167926.8	1505	9	-73	8	-73	0	multi-exon	FALSE	canonical	3	33	junction_1	152.008172066504	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATGAAGCCTAGGTGGT	NA	False	NA	12	True	AATAAA	-17	NA	152270517	152356304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152270843_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
ENSMUSG00000028943.19_0	chr4	-	2055	7	FSM	ENSMUSG00000028943.19	ENSMUST00000150958.8	2365	7	860	-550	-247	-1	multi-exon	FALSE	canonical	1	1	junction_1	6.29152869605896	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGGCTCTCATTCACT	NA	False	NA	NA	False	ATTAAA	-13	NA	152215934	152204788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_152205723_152208073_152208086_152208170_152208251_152212525_152212790_152212864_152213011_152215225_152215419_152215508
ENSMUSG00000028943.19_2	chr4	-	1900	8	FSM	ENSMUSG00000028943.19	ENSMUST00000105653.8	1411	8	48	-537	24	-2	multi-exon	FALSE	canonical	1	1	junction_1	6.13454587245254	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGTGGCTCTCATTCAC	NA	False	NA	NA	False	ATTAAA	-12	NA	152216274	152204789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_152205723_152208073_152208086_152208170_152208251_152212525_152212790_152212864_152213011_152215225_152215419_152215508_152215752_152216245
ENSMUSG00000028943.19_20	chr4	-	2809	12	NIC	ENSMUSG00000028943.19	novel	3406	16	NA	NA	-16	2	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	3.7482778414706	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTTGAGATTCTGCATT	NA	False	NA	0	True	NA	NA	NA	152236844	152212248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152212790_152212864_152213011_152215225_152215419_152215508_152215752_152217380_152217414_152218617_152218899_152219929_152220132_152222886_152223019_152223192_152223376_152223495_152223683_152233315_152233510_152236370
ENSMUSG00000028943.19_5	chr4	-	3558	15	NIC	ENSMUSG00000028943.19	novel	3406	16	NA	NA	-16	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	4.85293935756086	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGGCTCTCATTCACT	NA	False	NA	NA	False	ATTAAA	-13	NA	152236844	152204788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152205723_152208073_152208086_152208170_152208251_152212525_152212790_152212864_152213011_152215225_152215419_152215508_152215752_152217380_152217414_152218617_152218899_152219929_152220132_152222886_152223019_152223192_152223376_152223495_152223683_152233315_152233510_152236370
ENSMUSG00000028944.15_0	chr5	-	2178	12	FSM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	20	7	1	-7	multi-exon	FALSE	canonical	3	116	junction_1	21.3386701313649	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGCTAAAGTTTTTATG	NA	False	NA	-16	True	AATAAA	-12	NA	25113447	25067752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
ENSMUSG00000028944.15_17	chr5	-	3354	16	NIC	ENSMUSG00000028944.15	novel	3331	16	NA	NA	-31	-7	combination_of_known_junctions	FALSE	canonical	3	8	junction_12	66.6035034113572	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGCTAAAGTTTTTATG	NA	False	NA	-16	True	AATAAA	-12	NA	25305671	25067752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094187_25113320_25113391_25152421_25152637_25226789_25227070_25233462_25233535_25305008
ENSMUSG00000028944.15_3	chr5	-	3342	16	FSM	ENSMUSG00000028944.15	ENSMUST00000030784.14	3331	16	-25	14	-25	-10	multi-exon	FALSE	canonical	3	8	junction_12	63.6806616381038	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGTTTGCTAAAGTTTTT	NA	False	NA	-19	True	AATAAA	-9	NA	25305665	25067755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320_25113391_25152421_25152637_25226789_25227070_25233462_25233535_25305008
ENSMUSG00000028944.15_4	chr5	-	2178	12	ISM	ENSMUSG00000028944.15	ENSMUST00000076306.12	2838	14	87304	10	1	-10	3prime_fragment	FALSE	canonical	3	39	junction_11	38.9905688956947	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGTTTGCTAAAGTTTTT	NA	False	NA	-19	True	AATAAA	-9	NA	25113447	25067755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094187_25113320
ENSMUSG00000028945.10_0	chr5	-	1170	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	186	428	-10	416	multi-exon	FALSE	canonical	3	1533	junction_1	69.8271919433531	881	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCTTTGAGCTACTTGG	NA	False	NA	-11	True	AATAAA	-15	NA	25047436	25008248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
ENSMUSG00000028948.17_1	chr4	+	3709	12	FSM	ENSMUSG00000028948.17	ENSMUST00000084116.13	3722	12	13	0	4	0	multi-exon	FALSE	canonical	3	617	junction_5	39.8725241465621	1498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATAATAACAAAGA	7358	False	NA	NA	False	NA	NA	NA	152123796	152144481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152130288_152130404_152130493_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504_152140683_152142247_152142382_152142797
ENSMUSG00000028948.17_2	chr4	+	3713	12	NNC	ENSMUSG00000028948.17	novel	3722	12	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_4	187.855052264125	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATAATAACAAAGA	7357	False	NA	NA	False	NA	NA	NA	152123795	152144481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152130288_152130401_152130493_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504_152140683_152142247_152142382_152142797
ENSMUSG00000028948.17_59	chr4	+	740	1	ISM	ENSMUSG00000028948.17	ENSMUST00000084116.13	3722	12	19953	5	19917	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTTAAAGAAAATAATAAC	NA	False	NA	NA	False	NA	NA	NA	152143736	152144476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152143700_152144500
ENSMUSG00000028949.14_3	chr5	-	1799	13	FSM	ENSMUSG00000028949.14	ENSMUST00000030791.12	1735	13	-67	3	-67	-3	multi-exon	FALSE	canonical	3	54	junction_12	43.1762376776856	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGCCTTGTGGTCATT	6918	False	NA	-3	True	ATTAAA	-14	NA	24807077	24797622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589_24803802_24806778
ENSMUSG00000028949.14_4	chr5	-	1436	12	ISM	ENSMUSG00000028949.14	ENSMUST00000030791.12	1735	13	3271	5	197	-5	3prime_fragment	FALSE	canonical	3	153	junction_8	20.0610638050861	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAGCAGCCTTGTGGTCA	NA	False	NA	-5	True	ATTAAA	-12	NA	24803739	24797624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589
ENSMUSG00000028949.14_9	chr5	-	1707	14	FSM	ENSMUSG00000028949.14	ENSMUST00000195943.2	1712	14	4	1	4	-1	multi-exon	FALSE	canonical	3	4	junction_12	70.4408770513493	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCCTTGTGGTCATTGT	646	False	NA	-1	True	ATTAAA	-16	NA	24829405	24797620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589_24803802_24827521_24827667_24829345
ENSMUSG00000028950.4_0	chr4	-	1205	2	ISM	ENSMUSG00000028950.4	ENSMUST00000030792.2	2863	6	7664	0	7664	0	3prime_fragment	FALSE	canonical	3	9	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGGCTTCTTGGCTG	5436	False	NA	0	True	AATAAA	-14	NA	152115361	152112370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_152113455_152115240
ENSMUSG00000028950.4_1	chr4	-	287	1	ISM	ENSMUSG00000028950.4	ENSMUST00000030792.2	2863	6	10368	0	10368	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGGCTTCTTGGCTG	8140	False	NA	0	True	AATAAA	-14	NA	152112657	152112370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_152112400_152112700
ENSMUSG00000028952.13_1	chr4	-	2812	10	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	5	1	intron_retention	FALSE	canonical	3	16	junction_7	12.9109007441267	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGTGTCTGTTCCTTGGT	8684	False	NA	0	True	AATAAA	-19	NA	152112113	152104229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106692_152107152_152107265_152110234_152110477_152110844
ENSMUSG00000028952.13_10	chr4	-	2284	10	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	0	-2	intron_retention	FALSE	canonical	3	24	junction_9	11.5512812607707	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTTCAGTGTCTGTTCC	8679	False	NA	-5	True	AATAAA	-14	NA	152112118	152104234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152104578_152104646_152104736_152105000_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
ENSMUSG00000028952.13_14	chr4	-	2403	10	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	5	-3	intron_retention	FALSE	canonical	3	16	junction_6	14.204850501775	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGTTCAGTGTCTGTTC	8674	False	NA	-6	True	AATAAA	-13	NA	152112123	152104235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152104578_152104646_152104736_152105000_152105373_152105745_152105901_152105998_152106086_152106483_152106692_152107152_152107265_152110234_152110477_152110844_152111517_152111999
ENSMUSG00000028952.13_17	chr4	-	737	4	ISM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	6743	4	-302	-2	3prime_fragment	FALSE	canonical	3	49	junction_1	7.25718035235908	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTTCAGTGTCTGTTCC	NA	False	NA	-5	True	AATAAA	-14	NA	152105375	152104234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235
ENSMUSG00000028952.13_2	chr4	-	2030	10	ISM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	672	-1	-545	1	3prime_fragment	FALSE	canonical	3	32	junction_7	9.32142096940638	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGTGTCTGTTCCTTGGT	9351	False	NA	0	True	AATAAA	-19	NA	152111446	152104229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844
ENSMUSG00000028952.13_36	chr4	-	2195	11	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	4	-5	intron_retention	FALSE	canonical	2	3	junction_10	15.9715371833772	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTTGTTCAGTGTCTGT	8673	False	NA	-8	True	AATAAA	-11	NA	152112124	152104237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152112021
ENSMUSG00000028952.13_6	chr4	-	2207	11	FSM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	4	7	4	-5	multi-exon	FALSE	canonical	3	24	junction_10	11.2782977438973	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTTGTTCAGTGTCTGT	8683	False	NA	-8	True	AATAAA	-11	NA	152112114	152104237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
ENSMUSG00000028952.13_7	chr4	-	2334	11	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	5	-2	intron_retention	FALSE	canonical	3	16	junction_7	13.8506317545446	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTTCAGTGTCTGTTCC	8674	False	NA	-5	True	AATAAA	-14	NA	152112123	152104234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106692_152107152_152107265_152110234_152110477_152110844_152111517_152111999
ENSMUSG00000028952.13_9	chr4	-	2283	10	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	4	0	intron_retention	FALSE	canonical	3	24	junction_9	11.8049999869275	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTGTCTGTTCCTTGG	8683	False	NA	-1	True	AATAAA	-18	NA	152112114	152104230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
ENSMUSG00000028953.11_1	chr5	-	2448	13	ISM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	740	0	740	0	3prime_fragment	FALSE	canonical	3	1363	junction_8	89.0874648246816	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTGGGTCTCTGAGC	NA	False	NA	-29	True	AATAAA	-21	NA	24781725	24770342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516
ENSMUSG00000028953.11_2	chr5	-	2497	14	FSM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	72	0	72	0	multi-exon	FALSE	canonical	3	1197	junction_13	122.348082348837	2407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTGGGTCTCTGAGC	NA	False	NA	-29	True	AATAAA	-21	NA	24782393	24770342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
ENSMUSG00000028954.12_0	chr5	+	2571	15	FSM	ENSMUSG00000028954.12	ENSMUST00000197407.5	3546	15	452	523	-3	-523	multi-exon	TRUE	canonical	3	299	junction_1	111.175284472544	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATTTAAATGCTAACC	NA	False	NA	-5	True	ATTAAA	-4	NA	24890981	24914851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUSG00000028954.12_1	chr5	+	2592	15	FSM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	161	516	-2	-514	multi-exon	FALSE	canonical	3	384	junction_1	91.6660977100463	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGCTAACCACAGCAAGT	NA	False	NA	4	True	ATTAAA	-13	NA	24890982	24914860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUSG00000028954.12_39	chr5	+	2557	14	ISM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	3553	516	3390	-514	3prime_fragment	FALSE	canonical	3	571	junction_8	47.4627228377344	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGCTAACCACAGCAAGT	NA	False	NA	4	True	ATTAAA	-13	NA	24894374	24914860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUSG00000028955.4_0	chr4	-	2095	5	FSM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	14	11	7	-11	multi-exon	FALSE	canonical	3	150	junction_4	30.2685893295343	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGATCCTGTGTCGTGT	NA	False	NA	-8	True	AATAAA	-11	NA	151142396	151131767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
ENSMUSG00000028955.4_1	chr4	-	1401	1	ISM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	9242	11	9235	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGATCCTGTGTCGTGT	6381	False	NA	-8	True	AATAAA	-11	NA	151133168	151131767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_151131800_151133200
ENSMUSG00000028957.13_0	chr4	-	2161	12	FSM	ENSMUSG00000028957.13	ENSMUST00000128283.2	2139	12	-17	-5	-17	5	multi-exon	FALSE	canonical	0	0	junction_1	1.23315090602278	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTTTAGTCTGTTTCCT	304	False	NA	NA	False	AATAAA	-23	NA	151129139	151108641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_151108997_151109528_151109658_151110569_151110676_151113205_151113363_151113592_151113700_151116369_151116449_151118313_151118454_151122345_151122395_151125728_151125931_151127132_151127249_151128015_151128162_151128564
ENSMUSG00000028958.16_0	chr5	-	1276	3	FSM	ENSMUSG00000028958.16	ENSMUST00000030799.15	1333	3	51	6	-12	2	multi-exon	FALSE	canonical	3	68	junction_2	11	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCAGTGTGTCTGTGTGTT	NA	False	NA	-2	True	ATTAAA	-20	NA	24652801	24650461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24651272_24651531_24651951_24652754
ENSMUSG00000028958.16_1	chr5	-	1275	3	NIC	ENSMUSG00000028958.16	novel	1333	3	NA	NA	-1	2	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	43	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCAGTGTGTCTGTGTGTT	NA	False	NA	-2	True	ATTAAA	-20	NA	24652790	24650461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_24651272_24651531_24651951_24652744
ENSMUSG00000028958.16_2	chr5	-	1214	2	ISM	ENSMUSG00000028958.16	ENSMUST00000115036.8	1455	3	380	-2	15	2	3prime_fragment	FALSE	canonical	3	90	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCAGTGTGTCTGTGTGTT	NA	False	NA	-2	True	ATTAAA	-20	NA	24651935	24650461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_24651272_24651531
ENSMUSG00000028959.15_1	chr5	-	1791	10	FSM	ENSMUSG00000028959.15	ENSMUST00000030800.13	1893	10	101	1	0	0	multi-exon	FALSE	canonical	3	1073	junction_9	118.54686003725	1091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAAGTCTTGTTTCTGG	NA	False	NA	-5	True	NA	NA	NA	24650184	24646037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
ENSMUSG00000028959.15_10	chr5	-	2649	8	NIC	ENSMUSG00000028959.15	novel	2552	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	1095	junction_1	125.764762593519	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAAGTCTTGTTTCTGG	NA	False	NA	-5	True	NA	NA	NA	24650184	24646037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647394_24648001_24648142_24648274_24648455_24648892
ENSMUSG00000028959.15_20	chr5	-	1807	10	NIC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_5	369.485762100601	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAAGTCTTGTTTCTGG	NA	False	NA	-5	True	NA	NA	NA	24650183	24646037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647099_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
ENSMUSG00000028959.15_7	chr5	-	2550	9	FSM	ENSMUSG00000028959.15	ENSMUST00000149085.8	2552	9	2	0	1	0	multi-exon	FALSE	canonical	3	1095	junction_1	118.721049102508	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAAGTCTTGTTTCTGG	NA	False	NA	-5	True	NA	NA	NA	24650183	24646037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892
ENSMUSG00000028960.21_1	chr4	-	5487	27	FSM	ENSMUSG00000028960.21	ENSMUST00000103212.10	5626	27	133	6	15	0	multi-exon	TRUE	canonical	3	203	junction_22	27.7325828917206	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGAGCCTCCTGTGAGTC	NA	False	NA	-8	True	AATAAA	-17	NA	149511073	149412878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149414195_149414647_149414795_149415779_149415955_149419568_149419761_149421841_149421977_149427335_149427481_149428971_149429099_149432383_149432620_149435114_149435214_149435914_149436043_149437384_149437485_149439874_149440014_149442081_149442281_149443653_149443768_149444734_149444834_149444916_149445034_149445740_149445798_149449910_149449995_149452757_149452873_149455615_149455717_149457284_149457427_149465639_149465869_149468194_149468340_149469581_149469670_149471537_149471674_149483055_149483243_149510338
ENSMUSG00000028960.21_2	chr4	-	1135	1	ISM	ENSMUSG00000028960.21	ENSMUST00000103212.10	5626	27	97194	5	2277	1	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGAGCCTCCTGTGAGTCG	NA	False	NA	-7	True	AATAAA	-18	NA	149414012	149412877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_149412900_149414000
ENSMUSG00000028961.16_0	chr4	-	2177	13	FSM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	38	3	-9	-3	multi-exon	FALSE	canonical	1	98	junction_7	73.9915066447194	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGCTTCTTTGTTTCTTC	NA	False	NA	-11	True	AATAAA	-13	NA	149251126	149234450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
ENSMUSG00000028961.16_5	chr4	-	1568	7	ISM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	8627	3	1919	-3	3prime_fragment	FALSE	canonical	3	350	junction_6	12.979684981625	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGCTTCTTTGTTTCTTC	4784	False	NA	-11	True	AATAAA	-13	NA	149242537	149234450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417
ENSMUSG00000028962.15_0	chr5	+	4558	23	NIC	ENSMUSG00000028962.15	novel	966	4	NA	NA	-57	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	10.9707537579024	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTAGGCTTGGTCTTGT	NA	False	NA	4	True	AGTAAA	-13	NA	24628777	24645942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_24629367_24632520_24632635_24634413_24634577_24634701_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639502_24639632_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
ENSMUSG00000028962.15_1	chr5	+	4128	23	FSM	ENSMUSG00000028962.15	ENSMUST00000080067.13	4179	23	45	6	1	-3	multi-exon	FALSE	canonical	3	23	junction_2	8.13471288485391	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTAGGCTTGGTCTTGT	NA	False	NA	4	True	AGTAAA	-13	NA	24630274	24645942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24630434_24632520_24632635_24634413_24634577_24634701_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639502_24639632_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
ENSMUSG00000028962.15_11	chr5	+	3259	18	ISM	ENSMUSG00000028962.15	ENSMUST00000115047.3	4264	22	2855	3	-58	-3	3prime_fragment	FALSE	canonical	3	28	junction_7	6.89465968557773	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTAGGCTTGGTCTTGT	NA	False	NA	4	True	AGTAAA	-13	NA	24636275	24645942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639502_24639632_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
ENSMUSG00000028962.15_19	chr5	+	3590	20	ISM	ENSMUSG00000028962.15	ENSMUST00000115047.3	4264	22	1371	15	776	-15	3prime_fragment	FALSE	canonical	3	25	junction_2	7.54671508586733	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTTCAACCCCAACCTAG	NA	False	NA	-8	True	AGTAAA	-1	NA	24634791	24645930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639502_24639632_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
ENSMUSG00000028962.15_2	chr5	+	4122	23	NNC	ENSMUSG00000028962.15	novel	4179	23	NA	NA	-10	-8	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_10	10.3492723423692	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCAACCTAGGCTTGGT	NA	False	NA	-1	True	AGTAAA	-8	NA	24630263	24645937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_24630434_24632520_24632635_24634413_24634577_24634701_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639490_24639632_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
ENSMUSG00000028962.15_20	chr5	+	2129	11	ISM	ENSMUSG00000028962.15	ENSMUST00000115047.3	4264	22	6727	8	-395	-8	3prime_fragment	FALSE	canonical	3	30	junction_2	7.17216843081644	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCAACCTAGGCTTGGT	NA	False	NA	-1	True	AGTAAA	-8	NA	24640147	24645937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
ENSMUSG00000028962.15_24	chr5	+	4630	22	ISM	ENSMUSG00000028962.15	ENSMUST00000080067.13	4179	23	1629	7	30	-4	3prime_fragment	FALSE	canonical	3	23	junction_1	7.88983099353693	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACCTAGGCTTGGTCTTG	NA	False	NA	3	True	AGTAAA	-12	NA	24631858	24645941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_24632635_24634413_24634577_24634701_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639502_24639632_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
ENSMUSG00000028962.15_4	chr5	+	4362	21	NIC	ENSMUSG00000028962.15	novel	4179	23	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	23	junction_2	8.45739321540627	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTAGGCTTGGTCTTGTG	NA	False	NA	5	True	AGTAAA	-14	NA	24630270	24645943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_24630434_24632520_24632635_24634413_24634577_24634701_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
ENSMUSG00000028962.15_6	chr5	+	4260	22	NIC	ENSMUSG00000028962.15	novel	4179	23	NA	NA	1	-2	intron_retention	FALSE	canonical	3	23	junction_2	8.25363247180245	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTAGGCTTGGTCTTGTG	NA	False	NA	5	True	AGTAAA	-14	NA	24630274	24645943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_24630434_24632520_24632635_24634413_24634577_24634701_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
ENSMUSG00000028964.15_0	chr4	-	827	7	FSM	ENSMUSG00000028964.15	ENSMUST00000030805.14	908	7	76	5	18	-5	multi-exon	FALSE	canonical	3	5402	junction_3	199.85446093484	1764	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTACCTTTGTGTCTGGGG	NA	False	NA	-6	True	AATAAA	-21	NA	150994307	150981594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
ENSMUSG00000028965.14_0	chr4	+	937	7	FSM	ENSMUSG00000028965.14	ENSMUST00000105672.10	1999	7	24	1038	-11	-3	multi-exon	FALSE	canonical	0	0	junction_1	1.34370962471642	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTATGTGTGTGAGTG	7551	False	NA	NA	False	TTTAAA	-16	NA	151004635	151029521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_151004718_151014277_151014403_151015185_151015291_151016764_151016903_151017489_151017560_151018743_151018869_151029229
ENSMUSG00000028967.11_0	chr4	+	3034	4	FSM	ENSMUSG00000028967.11	ENSMUST00000030811.2	3043	4	1	8	1	-8	multi-exon	FALSE	canonical	3	303	junction_2	19.3275853524323	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCGTTAATAATGTGTCT	3782	False	NA	NA	False	AATAAA	-20	NA	150939530	150953336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_150939729_150949531_150949727_150949820_150949898_150950772
ENSMUSG00000028967.11_9	chr4	+	1799	1	ISM	ENSMUSG00000028967.11	ENSMUST00000073600.9	3036	4	13162	13	12008	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCGTTAATAATGTGTCT	6203	False	NA	NA	False	AATAAA	-20	NA	150951537	150953336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_150951500_150953300
ENSMUSG00000028969.11_0	chr5	-	1141	12	FSM	ENSMUSG00000028969.11	ENSMUST00000030814.11	2059	12	-29	947	-29	188	multi-exon	FALSE	canonical	0	0	junction_3	52.4982486917657	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTGATGATATGGTGG	NA	False	NA	-12	True	CATAAA	-15	NA	24628557	24624185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24624461_24624597_24624679_24624780_24624842_24625256_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
ENSMUSG00000028969.11_4	chr5	-	1111	12	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	6	190	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	52.4982486917657	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGATGATATGGTGGTG	NA	False	NA	-10	True	CATAAA	-17	NA	24628522	24624183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_24624461_24624597_24624679_24624780_24624834_24625245_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
ENSMUSG00000028970.10_0	chr5	+	4337	28	FSM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	-38	7	1	-7	multi-exon	TRUE	canonical	3	66	junction_6	57.377196351684	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGAGCCATCTGTTATG	NA	False	NA	3	True	ATTAAA	-10	NA	8848147	8916308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557_8860616_8862654_8862847_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ENSMUSG00000028970.10_15	chr5	+	4282	27	NIC	ENSMUSG00000028970.10	novel	4306	28	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	62.5254149509853	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCCATCTGTTATGTATA	NA	False	NA	7	True	ATTAAA	-14	NA	8848148	8916312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8862654_8862847_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ENSMUSG00000028970.10_23	chr5	+	4913	21	NIC	ENSMUSG00000028970.10	novel	4306	28	NA	NA	-11984	-1	intron_retention	FALSE	canonical	3	66	junction_6	63.848472965295	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATCTGTTATGTATATG	NA	False	NA	9	True	ATTAAA	-16	NA	8863305	8916314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ENSMUSG00000028970.10_36	chr5	+	1718	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	51021	3	-126	-3	3prime_fragment	FALSE	canonical	3	175	junction_1	34.1912269449343	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCCATCTGTTATGTATA	5258	False	NA	7	True	ATTAAA	-14	NA	8899206	8916312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ENSMUSG00000028970.10_4	chr5	+	3400	5	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	-38	52783	1	-119	intron_retention	FALSE	canonical	3	110	junction_4	17.1955662890176	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTGATATTATTTGTAA	NA	False	NA	-5	True	AATAAA	-13	NA	8848147	8863532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557
ENSMUSG00000028972.12_0	chr4	-	1470	7	FSM	ENSMUSG00000028972.12	ENSMUST00000105683.9	1460	7	-13	3	-13	-3	multi-exon	FALSE	canonical	3	16	junction_1	3.44802681092953	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTGTGTTACTATTCT	NA	False	NA	-1	True	AATAAA	-25	NA	150282940	150271474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_150271966_150273577_150273702_150276931_150277090_150278164_150278235_150280512_150280606_150281774_150281924_150282555
ENSMUSG00000028973.19_0	chr5	+	2676	16	FSM	ENSMUSG00000028973.19	ENSMUST00000073076.12	2939	16	253	10	0	-10	multi-exon	FALSE	canonical	3	156	junction_4	17.0567679626984	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCAAAGAGGCCGAGGC	NA	False	NA	19	True	AATAAA	-9	NA	24599405	24614933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565_24613817_24614351
ENSMUSG00000028973.19_5	chr5	+	2966	15	NIC	ENSMUSG00000028973.19	novel	2939	16	NA	NA	4	3	intron_retention	FALSE	canonical	3	156	junction_3	17.6207206412895	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAAAAATTTTCAAAGAG	NA	False	NA	11	True	AATAAA	-1	NA	24599409	24614925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_24599582_24604910_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565_24613817_24614351
ENSMUSG00000028974.14_1	chr4	+	2422	6	FSM	ENSMUSG00000028974.14	ENSMUST00000030816.4	2457	6	34	1	34	-1	multi-exon	FALSE	canonical	3	30	junction_2	2.13541565040626	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCAGCTGCCTTTGTTTGT	NA	False	NA	5	True	AATAAA	-15	NA	149188636	149205103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149202381_149203535
ENSMUSG00000028974.14_3	chr4	+	3519	6	NNC	ENSMUSG00000028974.14	novel	2457	6	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	13.7608139294157	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGCTGCCTTTGTTTGTC	NA	False	NA	6	True	AATAAA	-16	NA	149188632	149205104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149203312_149203374
ENSMUSG00000028974.14_5	chr4	+	3583	5	FSM	ENSMUSG00000028974.14	ENSMUST00000103216.10	1835	5	25	-1773	25	-4	multi-exon	FALSE	canonical	3	30	junction_2	2.34520787991171	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATCCAGCTGCCTTTGTT	NA	False	NA	2	True	AATAAA	-12	NA	149188627	149205100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228
ENSMUSG00000028974.14_8	chr4	+	1470	1	ISM	ENSMUSG00000028974.14	ENSMUST00000030816.4	2457	6	15031	1	11408	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCAGCTGCCTTTGTTTGT	NA	False	NA	5	True	AATAAA	-15	NA	149203633	149205103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_149203600_149205100
ENSMUSG00000028975.17_0	chr4	-	1492	11	Fusion	ENSMUSG00000086606.2_ENSMUSG00000028975.17	novel	2006	9	NA	NA	-4	0	multi-exon	FALSE	canonical	3	45	junction_1	151.923796687682	40	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGCTCGTTGTGGACAA	NA	False	NA	-4	True	AATAAA	-14	NA	149184277	149031948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_-_149032363_149033223_149033365_149046004_149046252_149047898_149047991_149050678_149050777_149051980_149052084_149055006_149055093_149068493_149068623_149126177_149126263_149160476_149160525_149184228
ENSMUSG00000028975.17_5	chr4	-	1945	9	FSM	ENSMUSG00000028975.17	ENSMUST00000103217.11	2006	9	58	3	-2	-3	multi-exon	FALSE	canonical	3	391	junction_6	18.1757909043871	564	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCCTGGCTCTGACCTC	NA	False	NA	-15	True	AATAAA	-17	NA	149184275	149044994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149046252_149047898_149047991_149050678_149050777_149051980_149052084_149055006_149055093_149068493_149068623_149126177_149126263_149160476_149160525_149184228
ENSMUSG00000028976.11_0	chr4	+	2813	13	NIC	ENSMUSG00000028976.11	novel	3158	14	NA	NA	35	-414	intron_retention	FALSE	canonical	1	2	junction_6	1.53432938662683	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAGACATAGCAGTTCTC	5660	False	NA	NA	False	AATAAA	-20	NA	150203774	150228212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_150204506_150205140_150205223_150210046_150210146_150210582_150210744_150213499_150213625_150220000_150220154_150223877_150224004_150224087_150224276_150224386_150224498_150225215_150225318_150226634_150226711_150227256_150227385_150227481
ENSMUSG00000028976.11_3	chr4	+	1367	7	ISM	ENSMUSG00000028976.11	ENSMUST00000030826.4	3158	14	20236	411	-34	-411	3prime_fragment	FALSE	canonical	1	3	junction_2	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACATAGCAGTTCTCTAC	NA	False	NA	NA	False	AATAAA	-23	NA	150223975	150228215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_150224004_150224087_150224276_150224386_150224498_150225215_150225318_150226634_150226711_150227256_150227385_150227481
ENSMUSG00000028977.18_0	chr4	+	4179	11	ISM	ENSMUSG00000028977.18	ENSMUST00000094464.10	4349	16	2	4628	2	-10	5prime_fragment	FALSE	canonical	1	2	junction_1	4.17612260356422	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGTGCAGCTCTCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	148888887	149024958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148888972_148922722_148922878_148974778_148974834_148986161_148986201_149013453_149013940_149017214_149018050_149019037_149019107_149020622_149020714_149021415_149021581_149022597_149022771_149022931
ENSMUSG00000028977.18_11	chr4	+	2932	1	ISM	ENSMUSG00000028977.18	ENSMUST00000122222.8	7926	21	147520	9	4947	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAAATCCATCACGTT	NA	False	NA	NA	False	AATAAA	-6	NA	149036405	149039337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_149036400_149039300
ENSMUSG00000028977.18_2	chr4	+	4347	16	FSM	ENSMUSG00000028977.18	ENSMUST00000094464.10	4349	16	2	0	2	0	multi-exon	FALSE	canonical	1	2	junction_1	4.01441845795323	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAACAGCTGTCCTCCCTC	NA	False	NA	22	True	AATAAA	-32	NA	148888887	149029586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148888972_148922722_148922878_148974778_148974834_148986161_148986201_149013453_149013940_149017214_149018050_149019037_149019107_149020622_149020714_149021415_149021581_149022597_149022771_149022931_149023780_149025738_149025872_149026123_149026188_149027359_149027515_149027659_149027783_149028714
ENSMUSG00000028977.18_21	chr4	+	4131	4	ISM	ENSMUSG00000028977.18	ENSMUST00000122222.8	7926	21	142321	20	-252	-20	3prime_fragment	FALSE	canonical	2	3	junction_2	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAACTGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149031206	149039326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_149031619_149032980_149033133_149033249_149033392_149035901
ENSMUSG00000028977.18_3	chr4	+	6270	21	FSM	ENSMUSG00000028977.18	ENSMUST00000122222.8	7926	21	-4	1660	-4	658	multi-exon	FALSE	canonical	0	0	junction_16	3.87653195524041	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATCCAAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	148888881	149037686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148888972_148922722_148922878_148974778_148974834_148986161_148986201_149013453_149013940_149017214_149018050_149019037_149019107_149020622_149020714_149021415_149021581_149022597_149022771_149022931_149023780_149025738_149025872_149026123_149026188_149027359_149027515_149027659_149027783_149028714_149029054_149030479_149030679_149031446_149031619_149032980_149033133_149033249_149033392_149035901
ENSMUSG00000028977.18_6	chr4	+	3871	12	ISM	ENSMUSG00000028977.18	ENSMUST00000094464.10	4349	16	124684	27	-4001	-27	3prime_fragment	FALSE	canonical	1	5	junction_2	3.36731985044584	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATTGGATTATTTATA	NA	False	NA	-5	True	AATAAA	-5	NA	149013569	149029559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_149013940_149017214_149018050_149019037_149019107_149020622_149020714_149021415_149021581_149022597_149022771_149022931_149023780_149025738_149025872_149026123_149026188_149027359_149027515_149027659_149027783_149028714
ENSMUSG00000028977.18_9	chr4	+	4257	5	ISM	ENSMUSG00000028977.18	ENSMUST00000122222.8	7926	21	141430	17	-1143	-17	3prime_fragment	FALSE	canonical	2	3	junction_3	1.87082869338697	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACTGGAAAAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	149030315	149039329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_149030679_149031446_149031619_149032980_149033133_149033249_149033392_149035901
ENSMUSG00000028978.13_0	chr5	+	3990	26	FSM	ENSMUSG00000028978.13	ENSMUST00000030834.7	4132	26	-10	152	-10	-5	multi-exon	FALSE	canonical	1	2	junction_12	2.97079114042034	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCAAACCTTGTGAGTTA	NA	False	NA	NA	False	CATAAA	-19	NA	24569797	24589320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24570000_24571757_24571861_24572195_24572345_24572478_24572642_24573816_24573909_24573987_24574130_24574795_24574936_24575018_24575194_24575785_24575888_24576602_24576798_24576899_24576974_24577124_24577270_24577631_24577737_24582278_24582347_24582590_24582708_24582808_24582984_24584706_24584840_24584946_24585026_24585170_24585359_24585867_24586041_24586361_24586573_24586651_24586740_24587522_24587645_24588257_24588407_24588527_24588723_24588815
ENSMUSG00000028979.18_11	chr4	+	4175	2	ISM	ENSMUSG00000028979.18	ENSMUST00000052060.7	3058	11	7973	304	7962	-304	intron_retention	FALSE	canonical	1	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGCTGACCTTAAAGGT	NA	False	NA	NA	False	AATAAA	-14	NA	148694993	148699652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148696624_148697107
ENSMUSG00000028979.18_14	chr4	+	2783	11	FSM	ENSMUSG00000028979.18	ENSMUST00000052060.7	3058	11	-29	304	-19	-304	multi-exon	FALSE	canonical	0	0	junction_8	9.81019877474458	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGCTGACCTTAAAGGT	NA	False	NA	NA	False	AATAAA	-14	NA	148686991	148699652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148687048_148687124_148687354_148687448_148687627_148688143_148688276_148690036_148690234_148690485_148690634_148692397_148692517_148694573_148694653_148696491_148696624_148697107_148697183_148698214
ENSMUSG00000028979.18_8	chr4	+	731	5	FSM	ENSMUSG00000028979.18	ENSMUST00000105701.9	738	5	6	1	-4	-1	multi-exon	FALSE	canonical	2	14	junction_1	7.49583217528247	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGTGGCTGTGTGTCTC	NA	False	NA	4	True	AATAAA	-14	NA	148687016	148688873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148687048_148687124_148687354_148687448_148687627_148688143_148688276_148688712
ENSMUSG00000028980.15_0	chr4	-	4733	5	FSM	ENSMUSG00000028980.15	ENSMUST00000030830.4	4745	5	1	11	1	-11	multi-exon	FALSE	canonical	3	55	junction_3	7.96868872525461	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCACTTAACATTGAGTT	NA	False	NA	-11	True	ATTAAA	-15	NA	150093479	150063942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_150067379_150068359_150068630_150078925_150079044_150080201_150080839_150093207
ENSMUSG00000028980.15_1	chr4	-	1967	1	ISM	ENSMUSG00000028980.15	ENSMUST00000084117.13	4571	5	21678	11	19813	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCACTTAACATTGAGTT	NA	False	NA	-11	True	ATTAAA	-15	NA	150065909	150063942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_150063900_150065900
ENSMUSG00000028980.15_2	chr4	-	3539	2	ISM	ENSMUSG00000028980.15	ENSMUST00000084117.13	4571	5	19125	11	17260	-11	3prime_fragment	FALSE	canonical	3	76	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCACTTAACATTGAGTT	NA	False	NA	-11	True	ATTAAA	-15	NA	150068462	150063942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_150067379_150068359
ENSMUSG00000028980.15_3	chr4	-	3934	4	ISM	ENSMUSG00000028980.15	ENSMUST00000084117.13	4571	5	7276	11	5411	-11	3prime_fragment	FALSE	canonical	3	55	junction_3	8.5764535535124	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCACTTAACATTGAGTT	NA	False	NA	-11	True	ATTAAA	-15	NA	150080311	150063942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_150067379_150068359_150068630_150078925_150079044_150080201
ENSMUSG00000028982.10_0	chr4	-	1433	7	FSM	ENSMUSG00000028982.10	ENSMUST00000105686.3	1887	7	15	439	15	-439	multi-exon	FALSE	canonical	3	394	junction_5	32.4623713791146	370	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTTCGTGCTGGGCTGTG	NA	False	NA	-6	True	ATTAAA	-16	NA	149858719	149828931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149829395_149833505_149833787_149836860_149836928_149838255_149838357_149840531_149840610_149846823_149847004_149858456
ENSMUSG00000028986.13_0	chr5	+	2962	11	FSM	ENSMUSG00000028986.13	ENSMUST00000030841.10	2966	11	-1	5	-1	-4	multi-exon	FALSE	canonical	3	50	junction_4	4.51220566907139	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTAAATAGATTTGCTTT	NA	False	NA	1	True	ATTAAA	-8	NA	24305601	24365778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303_24343479_24346148_24346292_24354122_24354364_24361887_24362090_24363536_24363635_24364444
ENSMUSG00000028986.13_1	chr5	+	3083	12	FSM	ENSMUSG00000028986.13	ENSMUST00000200116.5	3086	12	4	-1	4	0	multi-exon	FALSE	canonical	1	1	junction_8	21.6954883530201	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGATTTGCTTTGTTTA	NA	False	NA	6	True	ATTAAA	-13	NA	24305607	24365783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303_24343479_24346148_24346292_24354122_24354364_24356716_24356839_24361887_24362090_24363536_24363635_24364444
ENSMUSG00000028986.13_11	chr5	+	5304	3	ISM	ENSMUSG00000028986.13	ENSMUST00000200116.5	3086	12	52618	0	52576	0	3prime_fragment	FALSE	canonical	3	53	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATAGATTTGCTTTGTTT	NA	False	NA	5	True	ATTAAA	-12	NA	24358221	24365782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_24362090_24363536_24363635_24364444
ENSMUSG00000028986.13_12	chr5	+	1308	1	ISM	ENSMUSG00000028986.13	ENSMUST00000030841.10	2966	11	58868	5	58825	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTAAATAGATTTGCTTT	NA	False	NA	1	True	ATTAAA	-8	NA	24364470	24365778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_24364500_24365800
ENSMUSG00000028988.14_0	chr4	+	2750	5	FSM	ENSMUSG00000028988.14	ENSMUST00000030839.13	2674	5	-83	7	-83	-7	multi-exon	FALSE	canonical	3	188	junction_2	7.98044484975618	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTGCTGGGTGAGCTG	NA	False	NA	2	True	AATAAA	-9	NA	149602609	149650887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_149602837_149624285_149624371_149630167_149630289_149630858_149630950_149648661
ENSMUSG00000028988.14_7	chr4	+	2315	2	ISM	ENSMUSG00000028988.14	ENSMUST00000105692.2	634	4	1285	-1920	1285	-9	3prime_fragment	FALSE	canonical	3	193	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACAGCTTGCTGGGTGAGC	1521	False	NA	0	True	AATAAA	-7	NA	149630858	149650885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_149630950_149648661
ENSMUSG00000028990.14_12	chr4	+	1567	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	-19	-4	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	58.2405287035881	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATTGGTGTCTATGAAAA	NA	False	NA	23	True	NA	NA	NA	149569731	149581121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_149570050_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ENSMUSG00000028990.14_2	chr4	+	1281	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	3	-3	combination_of_known_splicesites	FALSE	canonical	3	53	junction_1	51.1324809905103	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGGTGTCTATGAAAAT	NA	False	NA	24	True	NA	NA	NA	149569699	149581122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_149569731_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ENSMUSG00000028990.14_33	chr4	+	3480	8	NNC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	11	1806	intron_retention	FALSE	non_canonical	0	0	junction_7	69.1685312427965	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149569761	149582931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536_149581594_149581725
ENSMUSG00000028990.14_4	chr4	+	1806	7	FSM	ENSMUSG00000028990.14	ENSMUST00000030842.8	1817	7	8	3	8	-3	multi-exon	FALSE	canonical	3	163	junction_3	14.9517743280039	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGGTGTCTATGAAAAT	NA	False	NA	24	True	NA	NA	NA	149569758	149581122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ENSMUSG00000028991.16_1	chr4	+	8574	58	FSM	ENSMUSG00000028991.16	ENSMUST00000103221.10	8564	58	-17	7	-17	-7	multi-exon	TRUE	canonical	2	74	junction_19	24.6853638803358	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCATATATGTGTATGA	NA	False	NA	27	True	AATAAA	-16	NA	148533050	148642133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008_148539210_148540441_148540577_148543083_148543360_148543440_148543550_148547243_148547431_148548148_148548278_148548759_148549005_148549403_148549620_148550347_148550554_148552706_148552830_148553444_148553535_148553823_148553917_148554678_148554814_148555028_148555159_148556370_148556622_148565321_148565409_148568011_148568180_148568766_148568880_148569082_148569246_148570505_148570599_148571232_148571380_148573932_148574076_148575791_148575955_148576077_148576224_148596227_148596304_148599282_148599423_148605748_148605850_148608915_148609032_148610180_148610259_148610454_148610563_148614938_148615065_148615134_148615267_148618318_148618435_148619364_148619483_148620967_148621217_148621818_148621920_148622319_148622417_148622732_148622832_148622919_148623043_148623184_148623368_148624437_148624573_148624741_148624917_148628875_148629012_148629966_148630115_148630854_148630978_148632060_148632144_148633824_148633898_148634247_148634323_148634544_148634681_148635415_148635482_148637168_148637250_148637487_148637569_148640723_148640830_148641301
ENSMUSG00000028991.16_29	chr4	+	4627	33	ISM	ENSMUSG00000028991.16	ENSMUST00000103221.10	8564	58	40903	7	40889	-7	3prime_fragment	FALSE	canonical	3	80	junction_5	15.8505902394043	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCATATATGTGTATGA	NA	False	NA	27	True	AATAAA	-16	NA	148573970	148642133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148574076_148575791_148575955_148576077_148576224_148596227_148596304_148599282_148599423_148605748_148605850_148608915_148609032_148610180_148610259_148610454_148610563_148614938_148615065_148615134_148615267_148618318_148618435_148619364_148619483_148620967_148621217_148621818_148621920_148622319_148622417_148622732_148622832_148622919_148623043_148623184_148623368_148624437_148624573_148624741_148624917_148628875_148629012_148629966_148630115_148630854_148630978_148632060_148632144_148633824_148633898_148634247_148634323_148634544_148634681_148635415_148635482_148637168_148637250_148637487_148637569_148640723_148640830_148641301
ENSMUSG00000028991.16_3	chr4	+	1029	5	FSM	ENSMUSG00000028991.16	ENSMUST00000057580.8	1003	5	-31	5	-17	-1	multi-exon	FALSE	canonical	3	142	junction_1	19.0656759649376	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTAGAGGCCTCTGAC	NA	False	NA	11	True	AATAAA	-17	NA	148533050	148539425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008
ENSMUSG00000028991.16_43	chr4	+	2359	15	ISM	ENSMUSG00000028991.16	ENSMUST00000103221.10	8564	58	90191	7	-5611	-7	3prime_fragment	FALSE	canonical	3	119	junction_3	11.4133827642136	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCATATATGTGTATGA	NA	False	NA	27	True	AATAAA	-16	NA	148623258	148642133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148623368_148624437_148624573_148624741_148624917_148628875_148629012_148629966_148630115_148630854_148630978_148632060_148632144_148633824_148633898_148634247_148634323_148634544_148634681_148635415_148635482_148637168_148637250_148637487_148637569_148640723_148640830_148641301
ENSMUSG00000028991.16_44	chr4	+	2215	14	ISM	ENSMUSG00000028991.16	ENSMUST00000103221.10	8564	58	91405	7	-4397	-7	3prime_fragment	FALSE	canonical	3	119	junction_2	11.8156450291815	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCATATATGTGTATGA	NA	False	NA	27	True	AATAAA	-16	NA	148624472	148642133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148624573_148624741_148624917_148628875_148629012_148629966_148630115_148630854_148630978_148632060_148632144_148633824_148633898_148634247_148634323_148634544_148634681_148635415_148635482_148637168_148637250_148637487_148637569_148640723_148640830_148641301
ENSMUSG00000028992.14_1	chr4	-	2209	5	FSM	ENSMUSG00000028992.14	ENSMUST00000030845.13	1238	5	9	-980	9	-7	multi-exon	FALSE	canonical	3	41	junction_2	4.60298815988049	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCACCAAGGACGACT	1661	False	NA	-14	True	AATAAA	-10	NA	149569646	149552035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149553669_149554096_149554240_149557741_149557926_149558884_149559053_149569565
ENSMUSG00000028992.14_3	chr4	-	2616	4	FSM	ENSMUSG00000028992.14	ENSMUST00000119921.8	2657	4	34	7	4	-7	multi-exon	FALSE	canonical	3	41	junction_1	4.98887651569859	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCACCAAGGACGACT	1682	False	NA	-14	True	AATAAA	-10	NA	149569625	149552035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149554240_149557741_149557926_149558884_149559053_149569565
ENSMUSG00000028995.15_0	chr5	-	5626	11	FSM	ENSMUSG00000028995.15	ENSMUST00000030849.13	5659	11	10	23	10	-23	multi-exon	TRUE	canonical	3	6	junction_1	17.5795335546766	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAACTAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	24235678	24165951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24170357_24184485_24184646_24185484_24185573_24188147_24188265_24190742_24190839_24191135_24191252_24191731_24191813_24192882_24193063_24196733_24196836_24204938_24205018_24235476
ENSMUSG00000028995.15_1	chr5	-	2960	1	ISM	ENSMUSG00000028995.15	ENSMUST00000030849.13	5659	11	66777	23	21116	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAACTAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	24168911	24165951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_24166000_24168900
ENSMUSG00000028995.15_4	chr5	-	5927	12	NIC	ENSMUSG00000028995.15	novel	2195	11	NA	NA	7	-23	combination_of_known_junctions	FALSE	canonical	3	47	junction_11	7.3033446430527	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAACTAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	24235681	24165951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_24170357_24171131_24171430_24184485_24184646_24185484_24185573_24188147_24188265_24190742_24190839_24191135_24191252_24191731_24191813_24192882_24193063_24196733_24196836_24204938_24205018_24235476
ENSMUSG00000028996.10_0	chr4	-	153	1	NIC	ENSMUSG00000028996.10	novel	507	4	NA	NA	2084	-1485	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAAAAGATTTAT	NA	False	NA	NA	False	NA	NA	NA	149535797	149535644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_149535600_149535800
ENSMUSG00000028998.7_0	chr5	-	372	3	FSM	ENSMUSG00000028998.7	ENSMUST00000030851.7	1125	3	43	710	43	-710	multi-exon	FALSE	canonical	3	3790	junction_2	61.5	437	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTTGCCTTTCATACT	NA	False	NA	-31	True	AATAAA	-16	NA	24049116	24044651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24044827_24046707_24046757_24048968
ENSMUSG00000028999.16_3	chr5	+	4076	17	NNC	ENSMUSG00000028999.16	novel	3298	15	NA	NA	5	1168	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	23.3565267912419	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACTGAGCTTAGCTGGA	NA	False	NA	4	True	AATAAA	-29	NA	23992723	24026535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016908_24020649_24020865_24021736_24021918_24022032_24022152_24024385_24025681_24025890_24026118_24026282
ENSMUSG00000028999.16_7	chr5	+	2746	15	FSM	ENSMUSG00000028999.16	ENSMUST00000030852.13	3298	15	28	524	-2	-452	multi-exon	FALSE	canonical	2	56	junction_5	10.4591040315534	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAGTTTCTTGTCTTGA	NA	False	NA	NA	False	GATAAA	-39	NA	23992736	24024843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016908_24020649_24020865_24021736_24021918_24022032_24022152_24024385
ENSMUSG00000029001.16_1	chr4	-	1712	7	NIC	ENSMUSG00000029001.16	novel	1633	7	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	18.9362967164473	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGCCCTGCGGCTTT	NA	False	NA	-6	True	AATAAA	-13	NA	148244339	148237259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_148238102_148238614_148238699_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
ENSMUSG00000029001.16_11	chr4	-	1612	6	FSM	ENSMUSG00000029001.16	ENSMUST00000172472.8	823	6	-18	-771	-16	-1	multi-exon	FALSE	canonical	3	7	junction_3	13.905394636615	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCCCTGCGGCTTTTG	NA	False	NA	-4	True	AATAAA	-15	NA	148244350	148237257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241065_148241164_148242993_148243281_148244199
ENSMUSG00000029001.16_2	chr4	-	1640	6	FSM	ENSMUSG00000029001.16	ENSMUST00000057907.10	1829	6	191	-2	-15	-1	multi-exon	FALSE	canonical	3	37	junction_4	3.00665927567458	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCCCTGCGGCTTTTG	NA	False	NA	-4	True	AATAAA	-15	NA	148244349	148237257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
ENSMUSG00000029001.16_3	chr4	-	1503	5	FSM	ENSMUSG00000029001.16	ENSMUST00000105705.9	1034	5	-5	-464	-5	0	multi-exon	FALSE	canonical	2	6	junction_2	15.4979837398289	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGCCCTGCGGCTTT	NA	False	NA	-6	True	AATAAA	-13	NA	148244339	148237259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148238102_148240602_148240739_148241065_148241164_148242993_148243281_148244199
ENSMUSG00000029001.16_7	chr4	-	1519	6	NIC	ENSMUSG00000029001.16	novel	1633	7	NA	NA	21	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	15.7556339129849	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCCCTGCGGCTTTTG	NA	False	NA	-4	True	AATAAA	-15	NA	148244519	148237257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244490
ENSMUSG00000029003.12_1	chr4	+	1215	10	FSM	ENSMUSG00000029003.12	ENSMUST00000084129.9	1162	10	-61	8	-61	-5	multi-exon	FALSE	canonical	3	16	junction_1	269.730638385688	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACCAAACAGGATGAACAT	NA	False	NA	22	True	AATAAA	-30	NA	148215310	148230148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148215424_148224299_148224478_148225241_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
ENSMUSG00000029003.12_10	chr4	+	907	7	NIC	ENSMUSG00000029003.12	novel	1535	8	NA	NA	-31	-13	combination_of_known_splicesites	FALSE	canonical	3	13	junction_3	247.779079468429	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTCATTAACCAAACAGG	NA	False	NA	14	True	AATAAA	-22	NA	148225149	148230140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_148225292_148225371_148225491_148227442_148227515_148228720_148228816_148229110_148229185_148229560_148229654_148229828
ENSMUSG00000029003.12_7	chr4	+	995	8	FSM	ENSMUSG00000029003.12	ENSMUST00000030860.9	1535	8	524	16	-18	-13	multi-exon	FALSE	canonical	3	623	junction_4	29.3730405338651	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTCATTAACCAAACAGG	NA	False	NA	14	True	AATAAA	-22	NA	148225162	148230140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
ENSMUSG00000029003.12_9	chr4	+	973	8	FSM	ENSMUSG00000029003.12	ENSMUST00000105707.2	949	8	-37	13	-18	-13	multi-exon	FALSE	canonical	3	65	junction_6	213.795439137317	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTCATTAACCAAACAGG	NA	False	NA	14	True	AATAAA	-22	NA	148225162	148230140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229582_148229654_148229828
ENSMUSG00000029004.16_0	chr5	+	1924	13	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	0	18780	0	4	5prime_fragment	FALSE	canonical	3	18	junction_10	3.30298686376774	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGGAAAAAAAGAGAA	NA	False	NA	NA	False	AAAACA	-27	NA	23639438	23690453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344
ENSMUSG00000029004.16_1	chr5	+	4695	24	NIC	ENSMUSG00000029004.16	novel	7252	26	NA	NA	-8	684	combination_of_known_splicesites	FALSE	canonical	1	2	junction_16	7.54670398391205	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGGTTTAATGAACAATT	NA	False	NA	NA	False	AGTAAA	-18	NA	23639430	23706212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299_23691399_23697265_23697431_23698196_23698506_23701401_23701547_23701969_23702221_23702536_23702594_23702725_23703293_23704279_23704591_23705253_23705343_23705448_23705575_23705724
ENSMUSG00000029004.16_2	chr5	+	2464	14	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	4	17546	4	289	5prime_fragment	FALSE	canonical	3	18	junction_10	3.24721091064699	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGTTCAGTATGTCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	23639442	23691687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299
ENSMUSG00000029004.16_4	chr5	+	2827	16	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	25	10529	17	-2502	5prime_fragment	FALSE	canonical	3	18	junction_10	3.53396220818629	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTGTAGTTCATGATTT	NA	False	NA	NA	False	ATTAAA	-16	NA	23639463	23698704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299_23691399_23697265_23697431_23698196
ENSMUSG00000029004.16_7	chr5	+	782	1	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	68593	420	4765	-420	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTAAATTGTTCTGTACA	NA	False	NA	5	True	AATAAA	-18	NA	23708031	23708813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_23708000_23708800
ENSMUSG00000029004.16_9	chr5	+	2809	15	NIC	ENSMUSG00000029004.16	novel	7252	26	NA	NA	4	-2502	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	7.00874089830633	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTGTAGTTCATGATTT	NA	False	NA	NA	False	ATTAAA	-16	NA	23639442	23698704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299_23691399_23697265_23697431_23698196
ENSMUSG00000029007.9_1	chr4	-	1326	5	NNC	ENSMUSG00000029007.9	novel	3996	5	NA	NA	53	602	at_least_one_novel_splicesite	FALSE	canonical	3	78	junction_4	478.358913369449	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGCTGTCTTGGTATGA	NA	False	NA	-19	True	NA	NA	NA	148172435	148164371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172136
ENSMUSG00000029007.9_2	chr4	-	1965	1	ISM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	8999	7	5744	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTATGCATTGCTGTGT	2880	False	NA	-10	True	AATAAA	-11	NA	148163489	148161524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_148161500_148163500
ENSMUSG00000029007.9_3	chr4	-	1105	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	31	2860	31	596	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCACCCTGCTGTCTTG	NA	False	NA	-25	True	NA	NA	NA	148172457	148164377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
ENSMUSG00000029009.18_10	chr4	+	6197	12	NIC	ENSMUSG00000029009.18	novel	847	4	NA	NA	-9	-1	intron_retention	FALSE	canonical	3	54	junction_1	21.8151513046846	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATAGCTGTTTTTAAATG	NA	False	NA	13	True	ATTAAA	-17	NA	148123606	148144004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
ENSMUSG00000029009.18_16	chr4	+	6987	11	NIC	ENSMUSG00000029009.18	novel	2104	6	NA	NA	-18	0	intron_retention	FALSE	canonical	3	54	junction_1	20.2852162916741	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAGCTGTTTTTAAATGC	NA	False	NA	14	True	ATTAAA	-18	NA	148123597	148144005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_148123867_148126040_148126287_148127881_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
ENSMUSG00000029009.18_39	chr4	+	5788	9	ISM	ENSMUSG00000029009.18	ENSMUST00000152498.8	4666	14	2822	3	2507	0	intron_retention	FALSE	canonical	3	98	junction_8	13.397177874463	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAGCTGTTTTTAAATGC	NA	False	NA	14	True	ATTAAA	-18	NA	148128565	148144005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
ENSMUSG00000029009.18_48	chr4	+	4662	5	ISM	ENSMUSG00000029009.18	ENSMUST00000152498.8	4666	14	10910	5	-481	-2	intron_retention	FALSE	canonical	3	98	junction_4	15.7003184681076	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATATAGCTGTTTTTAAAT	5764	False	NA	12	True	ATTAAA	-16	NA	148136653	148144003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
ENSMUSG00000029009.18_53	chr4	+	3057	1	ISM	ENSMUSG00000029009.18	ENSMUST00000069604.15	6072	12	15301	3	3814	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAGCTGTTTTTAAATGC	145	False	NA	14	True	ATTAAA	-18	NA	148140948	148144005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148140900_148144000
ENSMUSG00000029009.18_6	chr4	+	2811	13	NNC	ENSMUSG00000029009.18	novel	847	4	NA	NA	-14	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	34.6228689677149	44	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGAGGCTTGCTCTTGGC	NA	False	NA	20	True	AAGAAA	-34	NA	148123601	148140665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829_148140077_148140128
ENSMUSG00000029012.12_0	chr5	-	2072	14	FSM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	30	1	30	-1	multi-exon	FALSE	canonical	3	527	junction_10	41.6678895284064	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTAGCTGTGTTCTTTGG	NA	False	NA	-8	True	AATAAA	-13	NA	22755343	22691487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
ENSMUSG00000029012.12_13	chr5	-	1974	14	NIC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	34	-1	combination_of_known_junctions	TRUE	canonical	3	46	junction_12	150.475380832502	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTAGCTGTGTTCTTTGG	NA	False	NA	-8	True	AATAAA	-13	NA	22755339	22691487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751503_22752921_22753015_22755189
ENSMUSG00000029012.12_4	chr5	-	2155	13	FSM	ENSMUSG00000029012.12	ENSMUST00000135906.8	2117	13	-43	5	28	-1	multi-exon	FALSE	canonical	3	527	junction_9	41.555434863164	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTAGCTGTGTTCTTTGG	NA	False	NA	-8	True	AATAAA	-13	NA	22755345	22691487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
ENSMUSG00000029014.15_0	chr5	-	2067	17	FSM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	51	15	-15	0	multi-exon	FALSE	canonical	3	849	junction_11	91.8299209136107	1178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATTTTCACTTGGAATT	NA	False	NA	-12	True	AATAAA	-15	NA	21990198	21962279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
ENSMUSG00000029016.14_1	chr4	-	5159	23	FSM	ENSMUSG00000029016.14	ENSMUST00000030879.12	3306	23	20	-1873	20	-2	multi-exon	FALSE	canonical	3	89	junction_12	12.7042811811837	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACCTTGTCTCCACGGTG	7442	False	NA	-3	True	AATAAA	-20	NA	148123250	148088717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
ENSMUSG00000029016.14_10	chr4	-	4112	12	ISM	ENSMUSG00000029016.14	ENSMUST00000137724.8	5198	23	21227	1	20968	-1	3prime_fragment	FALSE	canonical	3	103	junction_11	7.94713940945976	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTTGTCTCCACGGTGC	NA	False	NA	-2	True	AATAAA	-21	NA	148102051	148088716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148101952
ENSMUSG00000029016.14_20	chr4	-	4980	22	NIC	ENSMUSG00000029016.14	novel	3306	23	NA	NA	-15	-6	combination_of_known_splicesites	FALSE	canonical	3	13	junction_11	25.583795892027	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTAGACCTTGTCTCCAC	7450	False	NA	-7	True	AATAAA	-16	NA	148123242	148088721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
ENSMUSG00000029016.14_23	chr4	-	5159	10	ISM	ENSMUSG00000029016.14	ENSMUST00000137724.8	5198	23	22921	1	22662	-1	3prime_fragment	FALSE	canonical	3	107	junction_8	7.39369100427294	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTTGTCTCCACGGTGC	505	False	NA	-2	True	AATAAA	-21	NA	148100357	148088716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957
ENSMUSG00000029016.14_6	chr4	-	3541	8	ISM	ENSMUSG00000029016.14	ENSMUST00000137724.8	5198	23	24859	1	24600	-1	3prime_fragment	FALSE	canonical	3	108	junction_2	6.47759088500265	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTTGTCTCCACGGTGC	2443	False	NA	-2	True	AATAAA	-21	NA	148098419	148088716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323
ENSMUSG00000029016.14_7	chr4	-	2073	1	ISM	ENSMUSG00000029016.14	ENSMUST00000137724.8	5198	23	32484	6	32225	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTAGACCTTGTCTCCAC	NA	False	NA	-7	True	AATAAA	-16	NA	148090794	148088721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_148088700_148090800
ENSMUSG00000029017.14_2	chr5	+	1585	13	FSM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	24	6	24	0	multi-exon	TRUE	canonical	3	306	junction_5	33.8430815184827	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTGCGTTAGTCTGTT	NA	False	NA	10	True	AATAAA	-12	NA	21942162	21962144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
ENSMUSG00000029017.14_20	chr5	+	1444	12	ISM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	1757	6	17	0	3prime_fragment	FALSE	canonical	3	306	junction_4	31.5285519295901	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTGCGTTAGTCTGTT	NA	False	NA	10	True	AATAAA	-12	NA	21943895	21962144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
ENSMUSG00000029020.14_0	chr4	-	4249	19	FSM	ENSMUSG00000029020.14	ENSMUST00000105716.9	4241	19	-10	2	1	-2	multi-exon	TRUE	canonical	2	51	junction_4	9.87139526330723	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGCTCTCTGCCTGC	NA	False	NA	-6	True	AATAAA	-17	NA	147989154	147958057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_147959916_147961407_147961543_147963170_147963368_147964398_147964555_147966473_147966695_147967337_147967441_147967674_147967780_147968083_147968211_147969909_147970032_147970137_147970206_147970727_147970882_147971662_147971771_147971871_147971981_147973076_147973202_147974570_147974734_147979019_147979156_147982920_147983100_147987811_147987955_147989114
ENSMUSG00000029022.19_0	chr4	-	1803	8	NIC	ENSMUSG00000029022.19	novel	1909	9	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	19	junction_4	85.7195236494807	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTGTCTCCATGTAAG	NA	False	NA	-13	True	AATAAA	-15	NA	147952960	147945248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947407_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ENSMUSG00000029022.19_1	chr4	-	1919	9	FSM	ENSMUSG00000029022.19	ENSMUST00000156374.9	1909	9	-11	1	-11	-1	multi-exon	FALSE	canonical	3	219	junction_8	23.8995292840675	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTGTCTCCATGTAAG	NA	False	NA	-13	True	AATAAA	-15	NA	147952967	147945248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ENSMUSG00000029022.19_11	chr4	-	1989	8	NIC	ENSMUSG00000029022.19	novel	1909	9	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	219	junction_7	24.6915667665654	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTGTCTCCATGTAAG	NA	False	NA	-13	True	AATAAA	-15	NA	147952959	147945248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ENSMUSG00000029022.19_13	chr4	-	1839	9	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	28	junction_1	78.0940938867979	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTGTCTCCATGTAAG	NA	False	NA	-13	True	AATAAA	-15	NA	147952959	147945248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ENSMUSG00000029022.19_24	chr4	-	1509	10	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	73.7735942588982	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTGTCTCCATGTAAG	NA	False	NA	-13	True	AATAAA	-15	NA	147952958	147945248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ENSMUSG00000029022.19_3	chr4	-	1854	11	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	3	11	junction_10	96.0689856301189	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTGTCTCCATGTAAG	NA	False	NA	-13	True	AATAAA	-15	NA	147952959	147945248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147951787_147952060_147952825
ENSMUSG00000029022.19_6	chr4	-	1583	10	FSM	ENSMUSG00000029022.19	ENSMUST00000030886.15	1813	10	214	16	-6	-3	multi-exon	FALSE	canonical	3	210	junction_4	26.1538657058192	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCCTGTCTCCATGTA	NA	False	NA	-15	True	AATAAA	-13	NA	147952962	147945250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ENSMUSG00000029026.18_1	chr4	-	2682	12	NNC	ENSMUSG00000029026.18	novel	4752	12	NA	NA	3214	230	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_10	4.45918126124753	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGTGGGGTCAGCTTGC	NA	False	NA	-2	True	GATAAA	-15	NA	154166565	154142738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_154143784_154145044_154145139_154145818_154145958_154146409_154146559_154146968_154147097_154148341_154148431_154148769_154148913_154149094_154149205_154151466_154151583_154152033_154152221_154165785_154166029_154166326
ENSMUSG00000029026.18_12	chr4	-	2811	1	ISM	ENSMUSG00000029026.18	ENSMUST00000239448.2	5046	14	81144	5	26258	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTTGACTATTGTAACTA	NA	False	NA	NA	False	AATAAA	-15	NA	154143521	154140710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_154140700_154143500
ENSMUSG00000029026.18_4	chr4	-	2703	12	FSM	ENSMUSG00000029026.18	ENSMUST00000133533.8	4752	12	20	2029	14	230	multi-exon	TRUE	canonical	1	1	junction_11	6.38697020736374	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGTGGGGTCAGCTTGC	NA	False	NA	-2	True	GATAAA	-15	NA	154181610	154142738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_154143784_154145044_154145139_154145818_154145958_154146409_154146559_154146968_154147097_154148341_154148431_154148769_154148913_154149094_154149205_154151466_154151583_154152033_154152221_154165785_154166029_154181350
ENSMUSG00000029026.18_6	chr4	-	1221	3	ISM	ENSMUSG00000029026.18	ENSMUST00000097763.10	1861	11	35724	-707	23879	230	3prime_fragment	FALSE	canonical	3	15	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGTGGGGTCAGCTTGC	NA	False	NA	-2	True	GATAAA	-15	NA	154145900	154142738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_154143784_154145044_154145139_154145818
ENSMUSG00000029026.18_7	chr4	-	4479	11	ISM	ENSMUSG00000029026.18	ENSMUST00000133533.8	4752	12	15594	1	3743	-1	3prime_fragment	FALSE	canonical	3	9	junction_10	4.31277173056957	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTTGACTATTGTAACTA	NA	False	NA	NA	False	AATAAA	-15	NA	154166036	154140710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_154143784_154145044_154145139_154145818_154145958_154146409_154146559_154146968_154147097_154148341_154148431_154148769_154148913_154149094_154149205_154151466_154151583_154152033_154152221_154165785
ENSMUSG00000029027.10_1	chr4	-	2016	7	FSM	ENSMUSG00000029027.10	ENSMUST00000030893.3	2093	7	71	6	2	-6	multi-exon	FALSE	canonical	3	25	junction_6	5.79271573232759	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAGACATGTCAAAATT	NA	False	NA	NA	False	AATAAA	-9	NA	154059512	154048911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154057236_154057426_154059025_154059153_154059323
ENSMUSG00000029027.10_10	chr4	-	472	1	ISM	ENSMUSG00000029027.10	ENSMUST00000030893.3	2093	7	10200	6	7483	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAGACATGTCAAAATT	NA	False	NA	NA	False	AATAAA	-9	NA	154049383	154048911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_154048900_154049400
ENSMUSG00000029027.10_7	chr4	-	1946	5	NIC	ENSMUSG00000029027.10	novel	2093	7	NA	NA	89	-6	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	16.3458710382775	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAGACATGTCAAAATT	NA	False	NA	NA	False	AATAAA	-9	NA	154056777	154048911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154056342
ENSMUSG00000029027.10_8	chr4	-	3028	7	NIC	ENSMUSG00000029027.10	novel	1634	8	NA	NA	2	-6	intron_retention	FALSE	canonical	3	6	junction_4	12.1746549118331	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAGACATGTCAAAATT	NA	False	NA	NA	False	AATAAA	-9	NA	154059506	154048911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154057136_154057236_154057426_154059025_154059153_154059323
ENSMUSG00000029028.15_0	chr4	+	3355	8	NNC	ENSMUSG00000029028.15	novel	3468	7	NA	NA	-10	-4	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_7	131.481511077041	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGACATCTCTGCATCAGCAG	NA	False	NA	11	True	AATAAA	-13	NA	154096249	154105965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_154096894_154100112_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087_154104449_154104494
ENSMUSG00000029028.15_2	chr4	+	3360	8	NNC	ENSMUSG00000029028.15	novel	3395	7	NA	NA	0	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	149.446598202454	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGACATCTCTGCATCAGC	NA	False	NA	9	True	AATAAA	-11	NA	154096259	154105963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_154096894_154100112_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087_154104674_154104702
ENSMUSG00000029028.15_3	chr4	+	3393	7	FSM	ENSMUSG00000029028.15	ENSMUST00000030894.15	3395	7	-3	5	-3	-5	multi-exon	FALSE	canonical	3	350	junction_6	37.5972812255827	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGACATCTCTGCATCAGCA	NA	False	NA	10	True	AATAAA	-12	NA	154096256	154105964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_154096894_154100112_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087
ENSMUSG00000029029.15_0	chr4	+	1572	12	FSM	ENSMUSG00000029029.15	ENSMUST00000030895.12	1598	12	25	1	-12	-1	multi-exon	FALSE	canonical	3	51	junction_4	6.78354840224641	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAACAGTGGTGGTTGTT	NA	False	NA	24	True	TATAAA	-29	NA	154226853	154241272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_154226971_154229699_154229853_154230947_154231065_154233166_154233240_154236084_154236189_154236794_154236882_154237017_154237153_154237249_154237328_154238991_154239098_154239697_154239824_154240557_154240750_154240988
ENSMUSG00000029029.15_6	chr4	+	1819	11	ISM	ENSMUSG00000029029.15	ENSMUST00000030895.12	1598	12	20	-2	-17	2	intron_retention	FALSE	canonical	3	51	junction_4	7.11407056473296	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGTGGTGGTTGTTTTC	NA	False	NA	27	True	TATAAA	-32	NA	154226848	154241275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_154226971_154229699_154229853_154230947_154231065_154233166_154233240_154236084_154236189_154236794_154236882_154237017_154237153_154237249_154237328_154238991_154239098_154239697_154239824_154240557
ENSMUSG00000029030.15_0	chr4	-	1725	4	FSM	ENSMUSG00000029030.15	ENSMUST00000030896.15	1724	4	-9	8	-9	-8	multi-exon	FALSE	canonical	3	665	junction_1	33.0891052899423	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAAATGGAGTTGCTCC	NA	False	NA	-11	True	AGTAAA	-8	NA	154245132	154241949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_154243023_154243725_154243880_154244541_154244719_154244811
ENSMUSG00000029030.15_8	chr4	-	1770	4	NIC	ENSMUSG00000029030.15	novel	1724	4	NA	NA	-10	-8	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	329.056226198502	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAAATGGAGTTGCTCC	NA	False	NA	-11	True	AGTAAA	-8	NA	154245133	154241949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_154243023_154243725_154243880_154244497_154244719_154244811
ENSMUSG00000029032.13_0	chr4	-	2920	16	NIC	ENSMUSG00000029032.13	novel	2860	15	NA	NA	4	-47	combination_of_known_junctions	FALSE	canonical	2	9	junction_15	8.43958924750883	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTGTTTTACATGTG	NA	False	NA	-13	True	CATAAA	-12	NA	154384507	154362989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154371546_154372424_154372471_154375392_154376011_154377288_154377400_154384281
ENSMUSG00000029032.13_1	chr4	-	2214	14	ISM	ENSMUSG00000029032.13	ENSMUST00000030898.12	2860	15	8883	34	-4086	-34	3prime_fragment	FALSE	canonical	3	21	junction_12	5.15097509008714	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGAGCCACCTGTTTC	NA	False	NA	0	True	CATAAA	-25	NA	154375628	154362976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154371546_154372424_154372471_154375392
ENSMUSG00000029032.13_2	chr4	-	2801	15	FSM	ENSMUSG00000029032.13	ENSMUST00000030898.12	2860	15	12	47	12	-47	multi-exon	FALSE	canonical	3	21	junction_12	5.46976849116476	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTGTTTTACATGTG	NA	False	NA	-13	True	CATAAA	-12	NA	154384499	154362989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154371546_154372424_154372471_154375392_154376011_154384281
ENSMUSG00000029032.13_3	chr4	-	3759	14	NIC	ENSMUSG00000029032.13	novel	2860	15	NA	NA	-4	16	intron_retention	FALSE	canonical	3	21	junction_13	5.15097509008714	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGGTCTCATGTTCTGT	NA	False	NA	50	True	AATATA	-20	NA	154384515	154362926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154372471_154375392_154376011_154384281
ENSMUSG00000029032.13_6	chr4	-	1850	12	ISM	ENSMUSG00000029032.13	ENSMUST00000030898.12	2860	15	13048	34	79	-34	3prime_fragment	FALSE	canonical	3	24	junction_6	4.00825594273611	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGAGCCACCTGTTTC	NA	False	NA	0	True	CATAAA	-25	NA	154371463	154362976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375
ENSMUSG00000029033.17_0	chr4	+	3921	24	FSM	ENSMUSG00000029033.17	ENSMUST00000105584.10	4365	24	443	1	-7	-1	multi-exon	FALSE	canonical	3	47	junction_10	11.8275254879557	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGCTGCCTGCTCATTGC	NA	False	NA	9	True	AATAAA	-14	NA	155976721	155991706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155976899_155980567_155980626_155981023_155981144_155981340_155981395_155983327_155983387_155983873_155984058_155984415_155984461_155984545_155984642_155984743_155984819_155985460_155985473_155986131_155986245_155986332_155986385_155986588_155986690_155986761_155986874_155987114_155987324_155987416_155987487_155987595_155987691_155987767_155987971_155988207_155988316_155989284_155989384_155989469_155989691_155989866_155989977_155990064_155990176_155990269
ENSMUSG00000029033.17_2	chr4	+	3905	23	FSM	ENSMUSG00000029033.17	ENSMUST00000079031.6	4301	23	388	8	-9	-7	multi-exon	TRUE	canonical	1	2	junction_9	17.5901456259036	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCACCGCTGCCTGCT	NA	False	NA	3	True	AATAAA	-8	NA	155976719	155991700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155976899_155980567_155980626_155981023_155981144_155981340_155981395_155983327_155983387_155983873_155984058_155984415_155984461_155984545_155984642_155984743_155984819_155986131_155986245_155986332_155986385_155986588_155986690_155986761_155986874_155987114_155987324_155987416_155987487_155987595_155987691_155987767_155987971_155988207_155988316_155989284_155989384_155989469_155989691_155989866_155989977_155990064_155990176_155990269
ENSMUSG00000029033.17_29	chr4	+	1335	4	ISM	ENSMUSG00000029033.17	ENSMUST00000137726.8	4101	22	12755	492	-292	-491	3prime_fragment	FALSE	canonical	3	74	junction_1	3.55902608401044	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGTCTGCGTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	155989523	155991216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_155989691_155989866_155989977_155990064_155990176_155990269
ENSMUSG00000029034.10_1	chr4	+	2105	17	FSM	ENSMUSG00000029034.10	ENSMUST00000030901.9	2368	17	27	236	6	134	multi-exon	FALSE	canonical	3	774	junction_2	75.0722308430354	1124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTTTTATTCCTACTC	9987	False	NA	30	True	AATAAA	-18	NA	155954029	155973324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
ENSMUSG00000029036.19_0	chr4	-	2395	16	FSM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	8	10	2	-10	multi-exon	FALSE	canonical	3	684	junction_5	53.203759265676	1187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTTCTGATTTTGCTTG	NA	False	NA	-19	True	AATAAA	-9	NA	155845542	155825107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
ENSMUSG00000029038.10_0	chr4	+	1031	5	FSM	ENSMUSG00000029038.10	ENSMUST00000030905.9	1472	5	343	98	8	-98	multi-exon	FALSE	canonical	3	1510	junction_4	100.903419169025	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACAGCAAGTGTCTGTTGT	NA	False	NA	19	True	AATAAA	-19	NA	155789599	155818238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383_155816503_155817929
ENSMUSG00000029038.10_6	chr4	+	810	4	FSM	ENSMUSG00000029038.10	ENSMUST00000105595.2	874	4	-1	65	-1	-65	multi-exon	FALSE	canonical	3	1675	junction_1	40.2685430026411	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACACATCCTGGTCA	NA	False	NA	NA	False	AATAAA	-23	NA	155789590	155816581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383
ENSMUSG00000029047.14_0	chr4	+	1562	6	FSM	ENSMUSG00000029047.14	ENSMUST00000103180.4	1688	6	35	91	-3	-91	multi-exon	FALSE	canonical	3	86	junction_5	7.62627038597505	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAGAAAA	NA	False	NA	NA	False	NA	NA	NA	155151507	155156799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155151632_155152279_155152361_155153119_155153527_155154843_155155020_155155097_155155234_155156161
ENSMUSG00000029047.14_7	chr4	+	2324	3	NIC	ENSMUSG00000029047.14	novel	1688	6	NA	NA	1954	-91	intron_retention	FALSE	canonical	3	86	junction_2	11.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAGAAAA	NA	False	NA	NA	False	NA	NA	NA	155153469	155156799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155155020_155155097_155155234_155156161
ENSMUSG00000029047.14_8	chr4	+	1076	4	ISM	ENSMUSG00000029047.14	ENSMUST00000103180.4	1688	6	1928	91	1885	-91	3prime_fragment	FALSE	canonical	3	86	junction_3	9.46337971105226	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAGAAAA	NA	False	NA	NA	False	NA	NA	NA	155153400	155156799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_155153527_155154843_155155020_155155097_155155234_155156161
ENSMUSG00000029048.4_0	chr4	-	1286	7	FSM	ENSMUSG00000029048.4	ENSMUST00000030914.4	1596	7	35	275	33	-275	multi-exon	FALSE	canonical	3	1097	junction_6	206.502959354635	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTTTGAGACTATTTTG	NA	False	NA	-35	True	TATAAA	-16	NA	155170795	155158841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
ENSMUSG00000029048.4_2	chr4	-	4369	7	ISM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	46	275	46	-275	intron_retention	FALSE	canonical	3	376	junction_6	458.230897643923	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTTTGAGACTATTTTG	NA	False	NA	-35	True	TATAAA	-16	NA	155170782	155158841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565
ENSMUSG00000029048.4_3	chr4	-	1409	8	NIC	ENSMUSG00000029048.4	novel	1803	8	NA	NA	37	-276	combination_of_known_junctions	FALSE	canonical	3	91	junction_7	617.350990035619	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGTTTGAGACTATTTT	NA	False	NA	-36	True	TATAAA	-15	NA	155170791	155158842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167694_155170661
ENSMUSG00000029048.4_4	chr4	-	1487	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	36	280	36	-280	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTAATTGTTTGAGACTA	NA	False	NA	-40	True	TATAAA	-11	NA	155170792	155158846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
ENSMUSG00000029049.15_1	chr4	+	1640	14	FSM	ENSMUSG00000029049.15	ENSMUST00000030915.11	1659	14	11	8	-1	-8	multi-exon	TRUE	canonical	3	16	junction_9	6.41927570616156	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAACCCTGAGTAGCACCT	NA	False	NA	9	True	AATAAA	-10	NA	155171044	155229954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155171139_155171877_155171950_155173942_155174042_155175339_155175451_155176725_155176817_155177518_155177607_155185722_155185820_155186546_155186658_155195384_155195509_155195873_155196047_155213135_155213258_155213339_155213423_155226858_155226903_155229623
ENSMUSG00000029050.16_1	chr4	-	4590	7	FSM	ENSMUSG00000029050.16	ENSMUST00000030917.6	5522	7	-481	1413	-481	-1413	multi-exon	FALSE	canonical	3	196	junction_6	29.4528813908287	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAGCTTTAAGTGTGTTG	NA	False	NA	-7	True	ACTAAA	-15	NA	155307530	155239944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_155241987_155242402_155242634_155243744_155244038_155244152_155244416_155245036_155245153_155245290_155245414_155306008
ENSMUSG00000029050.16_11	chr4	-	4202	6	NIC	ENSMUSG00000029050.16	novel	5522	7	NA	NA	-214	-1411	intron_retention	FALSE	canonical	3	19	junction_5	92.6809581305675	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTAAGTGTGTTGGT	NA	False	NA	-5	True	ACTAAA	-17	NA	155307263	155239942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_155241987_155242402_155242634_155243744_155244038_155244152_155244416_155245036_155245153_155306008
ENSMUSG00000029050.16_3	chr4	-	2652	1	ISM	ENSMUSG00000029050.16	ENSMUST00000129314.2	4521	7	31444	126	31444	-126	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAGGAAACAAAGAAAAAGC	NA	False	NA	-37	True	TATAAA	-22	NA	155241309	155238657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_155238700_155241300
ENSMUSG00000029050.16_4	chr4	-	4437	8	NNC	ENSMUSG00000029050.16	novel	5522	7	NA	NA	-485	-1413	intron_retention	FALSE	non_canonical	0	0	junction_7	84.700914386795	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAGCTTTAAGTGTGTTG	NA	False	NA	-7	True	ACTAAA	-15	NA	155307534	155239944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_155241987_155242402_155242634_155243744_155244038_155244152_155244416_155245036_155245153_155245290_155245414_155306008_155307104_155307260
ENSMUSG00000029053.17_0	chr4	-	2322	18	FSM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	-31	350	-31	29	multi-exon	FALSE	canonical	3	142	junction_14	28.8196876191202	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTCCTCTGATGCCTTT	NA	False	NA	-7	True	AATAAA	-18	NA	155445849	155346527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155439110_155439162_155440883_155440974_155441937_155442060_155445608
ENSMUSG00000029053.17_2	chr4	-	865	5	ISM	ENSMUSG00000029053.17	ENSMUST00000103178.11	4083	15	76622	1942	-815	29	3prime_fragment	FALSE	canonical	3	175	junction_4	23.28626204439	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTCCTCTGATGCCTTT	7787	False	NA	-7	True	AATAAA	-18	NA	155353607	155346527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489
ENSMUSG00000029053.17_21	chr4	-	537	4	ISM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	-31	92900	-31	1513	5prime_fragment	FALSE	canonical	3	200	junction_1	19.2584757675391	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTATGTATATGAGTGTT	NA	False	NA	-9	True	ATTAAA	-17	NA	155445849	155439077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_155439162_155440883_155440974_155441937_155442060_155445608
ENSMUSG00000029053.17_3	chr4	-	2236	17	NIC	ENSMUSG00000029053.17	novel	2641	18	NA	NA	-35	29	combination_of_known_splicesites	FALSE	canonical	3	5	junction_15	50.979009160634	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTCCTCTGATGCCTTT	NA	False	NA	-7	True	AATAAA	-18	NA	155445853	155346527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155439110_155439162_155441937_155442060_155445608
ENSMUSG00000029053.17_4	chr4	-	2039	1	Genic_Genomic	ENSMUSG00000029053.17	novel	NA	NA	NA	NA	6170	2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAATGCCCTTCCTGTTAT	NA	False	NA	-9	True	ATTAAA	-10	NA	155346622	155344583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_-_155344600_155346600
ENSMUSG00000029056.14_1	chr4	+	2552	19	FSM	ENSMUSG00000029056.14	ENSMUST00000030931.11	2508	19	14	-58	4	-5	multi-exon	FALSE	canonical	3	88	junction_8	27.1993100856585	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGCTCATCTGGTGAGAA	NA	False	NA	NA	False	NA	NA	NA	155048593	155065386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056925_155057027_155059086_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063377_155063483_155063948_155064050_155064182_155064252_155064951
ENSMUSG00000029056.14_11	chr4	+	4820	17	NIC	ENSMUSG00000029056.14	novel	2706	20	NA	NA	4	-1	intron_retention	FALSE	canonical	3	67	junction_13	28.5689270668326	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCATCTGGTGAGAAGCAG	NA	False	NA	NA	False	NA	NA	NA	155048593	155065390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063411_155063483_155063948_155064050_155064182_155064252_155064951
ENSMUSG00000029056.14_6	chr4	+	2526	19	NIC	ENSMUSG00000029056.14	novel	2706	20	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_15	31.6079377434698	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATCTGGTGAGAAGCAGT	NA	False	NA	NA	False	NA	NA	NA	155048590	155065391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056925_155057027_155059086_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063411_155063483_155063948_155064050_155064182_155064252_155064951
ENSMUSG00000029059.10_0	chr4	-	823	7	FSM	ENSMUSG00000029059.10	ENSMUST00000030935.10	883	7	31	29	31	-29	multi-exon	FALSE	canonical	3	64	junction_6	8.17856276425687	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAGCGTCTCACTGCTTC	NA	False	NA	-35	True	ATTAAA	-16	NA	154983536	154980884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_154981055_154981496_154981616_154981805_154981882_154981962_154982027_154982584_154982637_154982932_154983138_154983399
ENSMUSG00000029060.18_1	chr4	-	3618	19	FSM	ENSMUSG00000029060.18	ENSMUST00000103176.10	3642	19	23	1	18	0	multi-exon	FALSE	canonical	3	118	junction_12	57.2103817307469	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	7443	False	NA	-6	True	TATAAA	-12	NA	155753632	155739139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
ENSMUSG00000029060.18_10	chr4	-	3693	18	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	18	0	intron_retention	FALSE	canonical	3	118	junction_11	58.8548740018329	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	7443	False	NA	-6	True	TATAAA	-12	NA	155753632	155739139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
ENSMUSG00000029060.18_12	chr4	-	3734	20	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	10	0	intron_retention	FALSE	canonical	3	72	junction_13	70.1036035839604	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	7435	False	NA	-6	True	TATAAA	-12	NA	155753640	155739139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743459_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
ENSMUSG00000029060.18_14	chr4	-	3508	20	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	44	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_19	79.1919019895357	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	7469	False	NA	-6	True	TATAAA	-12	NA	155753606	155739139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030_155753188_155753271
ENSMUSG00000029060.18_8	chr4	-	3723	20	NNC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	9	0	intron_retention	FALSE	canonical	3	119	junction_13	62.6646971262766	101	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	7434	False	NA	-6	True	TATAAA	-12	NA	155753641	155739139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743447_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
ENSMUSG00000029061.3_1	chr4	-	660	1	NIC	ENSMUSG00000029061.3	novel	1434	8	NA	NA	710	1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCTGTGTTGTTTCCTGG	209	False	NA	NA	False	GATAAA	-15	NA	155735772	155735112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_155735100_155735800
ENSMUSG00000029061.3_4	chr4	-	1254	8	FSM	ENSMUSG00000029061.3	ENSMUST00000030937.2	1434	8	179	1	2	1	multi-exon	FALSE	canonical	2	6	junction_5	2.50713268211203	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCTGTGTTGTTTCCTGG	NA	False	NA	NA	False	GATAAA	-15	NA	155737662	155735112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_155735341_155735463_155735591_155735695_155735807_155735887_155736053_155736441_155736610_155736678_155736819_155736905_155737043_155737484
ENSMUSG00000029062.15_1	chr4	+	2562	20	FSM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	23	10	9	-10	multi-exon	FALSE	canonical	3	247	junction_2	74.7943440763884	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGAAAGAAGTGTCTAACT	3985	False	NA	13	True	ATTAAA	-18	NA	155709348	155734385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ENSMUSG00000029062.15_20	chr4	+	2717	21	NIC	ENSMUSG00000029062.15	novel	2595	20	NA	NA	9	-10	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	136.859882726824	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGAAAGAAGTGTCTAACT	3985	False	NA	13	True	ATTAAA	-18	NA	155709348	155734385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155709399_155709641_155709797_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ENSMUSG00000029062.15_5	chr4	+	2681	20	FSM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	-18	10	9	-10	multi-exon	FALSE	canonical	3	183	junction_2	84.1228490935262	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGAAAGAAGTGTCTAACT	3985	False	NA	13	True	ATTAAA	-18	NA	155709348	155734385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ENSMUSG00000029062.15_7	chr4	+	2507	20	NIC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	1	-10	combination_of_known_splicesites	TRUE	canonical	3	20	junction_1	123.771570491975	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGAAAGAAGTGTCTAACT	3963	False	NA	13	True	ATTAAA	-18	NA	155709326	155734385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155709399_155710183_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ENSMUSG00000029062.15_8	chr4	+	2618	21	NIC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	2	-8	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	115.97994438695	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGAAGTGTCTAACTTG	3978	False	NA	15	True	ATTAAA	-20	NA	155709341	155734387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155709399_155709987_155710112_155710183_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ENSMUSG00000029063.17_0	chr4	+	2846	11	NIC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-6	-8	combination_of_known_junctions	FALSE	canonical	3	42	junction_9	206.213699835874	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTGAGTTAAGTA	9708	False	NA	26	True	AATAAA	-12	NA	155648292	155675446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155673066_155673150_155673784
ENSMUSG00000029063.17_2	chr4	+	3003	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	137	12	-5	-8	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	1217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTGAGTTAAGTA	9709	False	NA	26	True	AATAAA	-12	NA	155648293	155675446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ENSMUSG00000029063.17_20	chr4	+	2796	11	NIC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-3	-8	combination_of_known_splicesites	FALSE	canonical	3	33	junction_1	208.120662116956	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTGAGTTAAGTA	9711	False	NA	26	True	AATAAA	-12	NA	155648295	155675446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155648437_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ENSMUSG00000029064.16_1	chr4	+	3063	11	FSM	ENSMUSG00000029064.16	ENSMUST00000105616.10	3088	11	15	10	9	-8	multi-exon	FALSE	canonical	3	1867	junction_1	609.593339858631	2421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGGGACTCTGGTGTG	NA	False	NA	17	True	AATAAA	-9	NA	155575835	155643716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155576038_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
ENSMUSG00000029064.16_2	chr4	+	3066	11	NIC	ENSMUSG00000029064.16	novel	3143	12	NA	NA	9	-8	combination_of_known_junctions	FALSE	canonical	3	731	junction_10	1033.79389145032	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGGGACTCTGGTGTG	NA	False	NA	17	True	AATAAA	-9	NA	155575835	155643716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155576038_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641924
ENSMUSG00000029064.16_3	chr4	+	3109	12	FSM	ENSMUSG00000029064.16	ENSMUST00000030940.14	3131	12	12	10	12	-8	multi-exon	FALSE	canonical	3	1763	junction_1	785.626496329864	2143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGGGACTCTGGTGTG	NA	False	NA	17	True	AATAAA	-9	NA	155575838	155643716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155576038_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
ENSMUSG00000029064.16_6	chr4	+	3109	12	FSM	ENSMUSG00000029064.16	ENSMUST00000165335.8	3143	12	24	10	15	-8	multi-exon	FALSE	canonical	3	731	junction_11	1088.68406424249	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGGGACTCTGGTGTG	NA	False	NA	17	True	AATAAA	-9	NA	155575841	155643716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155576038_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641924
ENSMUSG00000029066.13_1	chr4	+	657	4	FSM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	104	3	-22	-3	multi-exon	FALSE	canonical	3	1236	junction_3	66.873013989202	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTGTGAGTTATTTCCT	NA	False	NA	19	True	AATAAA	-15	NA	155888081	155893285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935
ENSMUSG00000029066.13_2	chr4	+	1142	5	NIC	ENSMUSG00000029066.13	novel	810	5	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	558.135064298956	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTGAGTTATTTCCTG	NA	False	NA	20	True	AATAAA	-16	NA	155887320	155893286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155887553_155887829_155888200_155888289_155888401_155891364_155891443_155892935
ENSMUSG00000029068.17_1	chr4	+	4017	11	NNC	ENSMUSG00000029068.17	novel	4220	11	NA	NA	7	41	intron_retention	FALSE	non_canonical	0	0	junction_8	297.048497723857	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGTTATGTAAGACTTTG	4644	False	NA	9	True	AATAAA	-14	NA	155896964	155908801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155904886_155905240_155905346_155905429_155905572_155906265_155906378_155906461_155906555_155907799
ENSMUSG00000029068.17_11	chr4	+	1696	6	ISM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	6	4983	6	-2312	5prime_fragment	FALSE	canonical	3	604	junction_5	178.167786089405	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGACCTTTAACTTTTCT	4643	False	NA	NA	False	ATTAAA	-16	NA	155896963	155904017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995
ENSMUSG00000029068.17_13	chr4	+	4565	10	NIC	ENSMUSG00000029068.17	novel	4220	11	NA	NA	7	41	intron_retention	FALSE	canonical	3	294	junction_7	226.622272340976	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGTTATGTAAGACTTTG	4644	False	NA	9	True	AATAAA	-14	NA	155896964	155908801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
ENSMUSG00000029068.17_4	chr4	+	2227	11	NNC	ENSMUSG00000029068.17	novel	2442	11	NA	NA	7	41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	312.668978314127	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGTTATGTAAGACTTTG	4644	False	NA	9	True	AATAAA	-14	NA	155896964	155908801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155904785_155904886_155905240_155905346_155905429_155905572_155906265_155906378_155906461_155906555_155907799
ENSMUSG00000029068.17_5	chr4	+	4014	11	FSM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	7	199	7	41	multi-exon	FALSE	canonical	3	294	junction_8	224.905068862398	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGTTATGTAAGACTTTG	4644	False	NA	9	True	AATAAA	-14	NA	155896964	155908801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
ENSMUSG00000029068.17_7	chr4	+	2224	11	FSM	ENSMUSG00000029068.17	ENSMUST00000030944.11	2442	11	19	199	7	41	multi-exon	FALSE	canonical	3	294	junction_8	247.410205933385	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGTTATGTAAGACTTTG	4644	False	NA	9	True	AATAAA	-14	NA	155896964	155908801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155904785_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
ENSMUSG00000029070.10_1	chr4	+	2192	10	FSM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	11	0	11	0	multi-exon	TRUE	canonical	1	2	junction_3	12.5648932828686	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGTCTTGGACCTGCT	NA	False	NA	12	True	AATAAA	-13	NA	155924193	155928545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155924348_155925234_155925256_155925362_155925666_155925901_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
ENSMUSG00000029070.10_6	chr4	+	1736	7	ISM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	1697	0	-881	0	3prime_fragment	FALSE	canonical	3	23	junction_2	4.10960933531265	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGTCTTGGACCTGCT	NA	False	NA	12	True	AATAAA	-13	NA	155925879	155928545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
ENSMUSG00000029070.10_8	chr4	+	1737	6	NIC	ENSMUSG00000029070.10	novel	2203	10	NA	NA	-767	0	intron_retention	FALSE	canonical	3	23	junction_1	4.12795348811006	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGTCTTGGACCTGCT	NA	False	NA	12	True	AATAAA	-13	NA	155925993	155928545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
ENSMUSG00000029070.10_9	chr4	+	2181	10	NIC	ENSMUSG00000029070.10	novel	2203	10	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	13.0194536306062	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGTCTTGGACCTGCT	NA	False	NA	12	True	AATAAA	-13	NA	155924195	155928545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155924348_155925234_155925256_155925371_155925666_155925901_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
ENSMUSG00000029071.17_0	chr4	+	3392	14	NIC	ENSMUSG00000029071.17	novel	3358	15	NA	NA	-28	-5	intron_retention	FALSE	canonical	3	113	junction_7	17.0970082853022	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGACTGATGTGTGGCTT	NA	False	NA	14	True	AAAAAG	-12	NA	155931889	155943754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155932362_155937874_155937945_155938093_155938216_155938439_155938544_155938786_155938926_155939022_155939258_155939342_155939483_155939560_155939638_155939728_155939797_155939923_155940077_155940588_155940721_155940818_155940987_155941070_155941278_155942449
ENSMUSG00000029071.17_2	chr4	+	3320	15	FSM	ENSMUSG00000029071.17	ENSMUST00000030948.16	3358	15	32	6	-27	-5	multi-exon	FALSE	canonical	3	98	junction_6	19.2953679542474	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGACTGATGTGTGGCTT	NA	False	NA	14	True	AAAAAG	-12	NA	155931890	155943754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155932362_155937874_155937945_155938093_155938216_155938439_155938544_155938786_155938926_155939022_155939117_155939187_155939258_155939342_155939483_155939560_155939638_155939728_155939797_155939923_155940077_155940588_155940721_155940818_155940987_155941070_155941278_155942449
ENSMUSG00000029071.17_6	chr4	+	3476	13	NIC	ENSMUSG00000029071.17	novel	3284	14	NA	NA	-27	-5	intron_retention	FALSE	canonical	3	113	junction_6	17.1334630345285	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGACTGATGTGTGGCTT	NA	False	NA	14	True	AAAAAG	-12	NA	155931890	155943754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155932362_155937874_155937945_155938093_155938216_155938439_155938544_155938786_155938926_155939022_155939483_155939560_155939638_155939728_155939797_155939923_155940077_155940588_155940721_155940818_155940987_155941070_155941278_155942449
ENSMUSG00000029071.17_8	chr4	+	3410	14	NIC	ENSMUSG00000029071.17	novel	3358	15	NA	NA	27	-5	intron_retention	FALSE	canonical	3	98	junction_6	19.6592270219506	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGACTGATGTGTGGCTT	NA	False	NA	14	True	AAAAAG	-12	NA	155931885	155943754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155932362_155937874_155937945_155938093_155938216_155938439_155938544_155938786_155938926_155939022_155939117_155939187_155939483_155939560_155939638_155939728_155939797_155939923_155940077_155940588_155940721_155940818_155940987_155941070_155941278_155942449
ENSMUSG00000029073.10_0	chr4	-	2103	3	FSM	ENSMUSG00000029073.10	ENSMUST00000030950.8	2662	3	2	557	2	16	multi-exon	FALSE	canonical	3	76	junction_1	2.5	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGGTATAGCATTCTGGG	NA	False	NA	-27	True	AATAAA	-14	NA	155953895	155949736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_155951343_155951569_155951795_155953623
ENSMUSG00000029073.10_2	chr4	-	2302	2	NIC	ENSMUSG00000029073.10	novel	2662	3	NA	NA	29	15	intron_retention	FALSE	canonical	3	81	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGGGTATAGCATTCTGG	NA	False	NA	-28	True	AATAAA	-13	NA	155953868	155949737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_155951795_155953623
ENSMUSG00000029076.15_0	chr4	+	1518	7	FSM	ENSMUSG00000029076.15	ENSMUST00000050078.13	5177	7	255	3404	-4	-4	multi-exon	FALSE	canonical	3	674	junction_3	38.3521692853076	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGTGTCCTCTCCAGCA	NA	False	NA	24	True	ATTAAA	-15	NA	156077622	156094663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ENSMUSG00000029076.15_44	chr4	+	1166	6	ISM	ENSMUSG00000029076.15	ENSMUST00000105578.2	1654	7	2997	110	2997	-2	3prime_fragment	FALSE	canonical	3	674	junction_2	38.055748580208	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTCCTCTCCAGCATG	NA	False	NA	26	True	ATTAAA	-17	NA	156080830	156094665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ENSMUSG00000029076.15_7	chr4	+	1646	8	FSM	ENSMUSG00000029076.15	ENSMUST00000105579.8	1670	8	22	2	-17	-2	multi-exon	FALSE	canonical	3	37	junction_1	241.738769445576	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTCCTCTCCAGCATG	NA	False	NA	26	True	ATTAAA	-17	NA	156077350	156094665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_156077464_156077609_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ENSMUSG00000029082.18_1	chr5	+	1261	9	FSM	ENSMUSG00000029082.18	ENSMUST00000101237.8	2856	9	17	1578	17	-2	multi-exon	FALSE	canonical	3	10	junction_6	2.97647022494766	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCATCTGTATTTTTTATT	NA	False	NA	NA	False	ATTAAA	-12	NA	43976249	43999750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_43976436_43977819_43977947_43978951_43979088_43979608_43979692_43982669_43982747_43983605_43983699_43994802_43994890_43997772_43997833_43999338
ENSMUSG00000029084.6_1	chr5	+	2768	8	FSM	ENSMUSG00000029084.6	ENSMUST00000030964.6	3270	8	303	199	-4	-199	multi-exon	FALSE	canonical	3	162	junction_4	17.0353773551587	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCCAAAGTATTTGCTTG	NA	False	NA	8	True	AATAAA	-13	NA	44026197	44069518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_44026463_44057674_44057805_44058762_44058899_44060936_44061023_44063505_44063580_44064854_44064948_44065264_44065352_44067621
ENSMUSG00000029084.6_15	chr5	+	1748	1	ISM	ENSMUSG00000029084.6	ENSMUST00000030964.6	3270	8	41876	199	41569	-199	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCCAAAGTATTTGCTTG	NA	False	NA	8	True	AATAAA	-13	NA	44067770	44069518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_44067800_44069500
ENSMUSG00000029086.16_0	chr5	-	3718	28	FSM	ENSMUSG00000029086.16	ENSMUST00000074113.13	3966	28	245	3	-28	-1	multi-exon	FALSE	canonical	2	5	junction_24	9.32068513939636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTTGGTGTTTGGTCCT	NA	False	NA	NA	False	AATAAA	-15	NA	44259051	44150964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44215967_44215995_44220467_44220527_44251736_44252111_44258989
ENSMUSG00000029086.16_1	chr5	-	3688	27	FSM	ENSMUSG00000029086.16	ENSMUST00000087441.11	3664	27	-27	3	-27	0	multi-exon	FALSE	canonical	3	24	junction_7	5.3433861125628	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTTTTGGTGTTTGGTC	NA	False	NA	NA	False	AATAAA	-13	NA	44259050	44150966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44220467_44220527_44251736_44252111_44258989
ENSMUSG00000029086.16_2	chr5	-	3609	28	NNC	ENSMUSG00000029086.16	novel	3966	28	NA	NA	-27	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.37463018449312	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGAGCTTTTGGTGTTTG	NA	False	NA	NA	False	AATAAA	-10	NA	44259050	44150969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_44151236_44151311_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44220467_44220527_44251736_44252111_44258989
ENSMUSG00000029086.16_3	chr5	-	271	1	ISM	ENSMUSG00000029086.16	ENSMUST00000074113.13	3966	28	108061	3	11026	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTTGGTGTTTGGTCCT	NA	False	NA	NA	False	AATAAA	-15	NA	44151235	44150964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_44151000_44151200
ENSMUSG00000029086.16_8	chr5	-	3672	26	NIC	ENSMUSG00000029086.16	novel	3664	27	NA	NA	-33	-1	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	8.13348633735866	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTTGGTGTTTGGTCCT	NA	False	NA	NA	False	AATAAA	-15	NA	44259056	44150964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_44151839_44152416_44152457_44158118_44158188_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44220467_44220527_44251736_44252111_44258989
ENSMUSG00000029089.9_0	chr5	+	1560	9	FSM	ENSMUSG00000029089.9	ENSMUST00000030968.7	1616	9	51	5	51	-5	multi-exon	FALSE	canonical	3	77	junction_5	8.92941067484299	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGATATTGTAGTTCTACA	NA	False	NA	8	True	ATTAAA	-16	NA	48529721	48546182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ENSMUSG00000029089.9_1	chr5	+	1475	8	FSM	ENSMUSG00000029089.9	ENSMUST00000200566.5	1422	8	-59	6	45	-5	multi-exon	FALSE	canonical	3	22	junction_4	26.2717354134182	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGATATTGTAGTTCTACA	NA	False	NA	8	True	ATTAAA	-16	NA	48529715	48546182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ENSMUSG00000029090.13_0	chr5	-	4457	19	FSM	ENSMUSG00000029090.13	ENSMUST00000030971.7	4480	19	23	0	23	0	multi-exon	FALSE	canonical	3	391	junction_6	33.7942668086734	1116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATTGTGCTGGTGGCTT	NA	False	NA	-10	True	AATAAA	-14	NA	50216325	50117297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_50118857_50118989_50119086_50121032_50121179_50128031_50128156_50129292_50129418_50136284_50136494_50136701_50136916_50144815_50145020_50147466_50147629_50155556_50155713_50156474_50156677_50159196_50159362_50164090_50164305_50166677_50166839_50168832_50168905_50170734_50170807_50174168_50174241_50183048_50183121_50215893
ENSMUSG00000029093.15_19	chr5	-	3270	10	ISM	ENSMUSG00000029093.15	ENSMUST00000037370.14	5707	27	362349	13	232704	-13	3prime_fragment	FALSE	canonical	2	6	junction_8	3.16227766016838	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAGGTTAAATCAACAG	NA	False	NA	NA	False	NA	NA	NA	36193119	36174536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_36176737_36178572_36178677_36181335_36181439_36181910_36182011_36183163_36183290_36184002_36184116_36185205_36185330_36186395_36186530_36188495_36188683_36193040
ENSMUSG00000029093.15_2	chr5	-	5677	27	FSM	ENSMUSG00000029093.15	ENSMUST00000037370.14	5707	27	27	3	10	-3	multi-exon	TRUE	canonical	0	0	junction_26	3.95836317854419	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCAACAGGGTCGGTCTC	NA	False	NA	NA	False	NA	NA	NA	36555441	36174526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_36176737_36178572_36178677_36181335_36181439_36181910_36182011_36183163_36183290_36184002_36184116_36185205_36185330_36186395_36186530_36188495_36188683_36193040_36193213_36194749_36194879_36195464_36195599_36196654_36196776_36199435_36199544_36200786_36200879_36203825_36203903_36205144_36205248_36207791_36207939_36213313_36213494_36219881_36219972_36222682_36222802_36225431_36225497_36228669_36228744_36235217_36235383_36311166_36311267_36386488_36386557_36554909
ENSMUSG00000029093.15_3	chr5	-	1210	1	ISM	ENSMUSG00000029093.15	ENSMUST00000037370.14	5707	27	379732	3	250087	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCAACAGGGTCGGTCTC	NA	False	NA	NA	False	NA	NA	NA	36175736	36174526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_36174500_36175700
ENSMUSG00000029094.13_0	chr5	+	6551	17	FSM	ENSMUSG00000029094.13	ENSMUST00000064571.11	6618	17	63	4	63	-4	multi-exon	FALSE	canonical	3	11	junction_3	3.8155725323993	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGTTGTCTGAGTCGTCA	2068	False	NA	11	True	NA	NA	NA	36050725	36161263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_36050885_36092895_36093025_36093381_36093477_36102531_36102641_36105378_36105591_36108198_36108379_36119089_36119192_36119548_36119631_36125913_36126064_36131731_36131944_36133835_36133982_36141532_36141651_36146897_36147013_36150884_36151050_36153300_36153492_36154861_36155027_36157042
ENSMUSG00000029094.13_12	chr5	+	5070	7	ISM	ENSMUSG00000029094.13	ENSMUST00000064571.11	6618	17	83207	21	-7662	-21	3prime_fragment	FALSE	canonical	3	14	junction_4	3.81881307912987	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCACAGGAGATGTCCGT	NA	False	NA	-6	True	AATAAA	-45	NA	36133869	36161246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_36133982_36141532_36141651_36146897_36147013_36150884_36151050_36153300_36153492_36154861_36155027_36157042
ENSMUSG00000029094.13_6	chr5	+	5488	9	ISM	ENSMUSG00000029094.13	ENSMUST00000064571.11	6618	17	75249	1	-15620	-1	3prime_fragment	FALSE	canonical	3	14	junction_6	3.56195171219375	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCTGAGTCGTCACTT	NA	False	NA	14	True	NA	NA	NA	36125911	36161266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_36126064_36131731_36131944_36133835_36133982_36141532_36141651_36146897_36147013_36150884_36151050_36153300_36153492_36154861_36155027_36157042
ENSMUSG00000029094.13_7	chr5	+	4423	3	ISM	ENSMUSG00000029094.13	ENSMUST00000064571.11	6618	17	102793	3	9107	-3	3prime_fragment	FALSE	canonical	3	21	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTGTCTGAGTCGTCAC	NA	False	NA	12	True	NA	NA	NA	36153455	36161264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_36153492_36154861_36155027_36157042
ENSMUSG00000029094.13_8	chr5	+	2624	1	ISM	ENSMUSG00000029094.13	ENSMUST00000064571.11	6618	17	107978	3	14292	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTGTCTGAGTCGTCAC	NA	False	NA	12	True	NA	NA	NA	36158640	36161264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_36158600_36161300
ENSMUSG00000029095.18_0	chr5	+	2510	16	NIC	ENSMUSG00000029095.18	novel	2579	18	NA	NA	-14	-21	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	24.7246166131381	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGAAGACATATATGCAG	1543	False	NA	18	True	ATTAAA	-20	NA	35915253	36041472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169_36015309_36032176_36032258_36040649
ENSMUSG00000029095.18_1	chr5	+	1826	14	NIC	ENSMUSG00000029095.18	novel	2579	18	NA	NA	19	-13	combination_of_known_junctions	FALSE	canonical	3	41	junction_11	15.4395174220198	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAACCAAGACCTCC	1532	False	NA	-8	True	NA	NA	NA	35915242	36015517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169
ENSMUSG00000029095.18_13	chr5	+	2863	17	NIC	ENSMUSG00000029095.18	novel	3042	19	NA	NA	-21	-90	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	26.2413676282316	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCTTTTCCCTCTGTCA	1536	False	NA	NA	False	AATACA	-15	NA	35915246	36041719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169_36015309_36032176_36032258_36040649
ENSMUSG00000029095.18_18	chr5	+	2528	17	NIC	ENSMUSG00000029095.18	novel	3564	20	NA	NA	-21	-25	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	28.6552787458088	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACATATGAAGACATATAT	1536	False	NA	14	True	ATTAAA	-16	NA	35915246	36041468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36014471_36014525_36015169_36015309_36024048_36024111_36030513_36030569_36032176_36032258_36040649
ENSMUSG00000029095.18_2	chr5	+	4036	11	ISM	ENSMUSG00000029095.18	ENSMUST00000114205.8	2579	18	-21	40031	-21	914	5prime_fragment	FALSE	canonical	3	68	junction_5	9.50789145920377	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	1536	False	NA	NA	False	NA	NA	NA	35915246	36001462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624
ENSMUSG00000029095.18_3	chr5	+	2632	18	NIC	ENSMUSG00000029095.18	novel	3564	20	NA	NA	-22	-24	combination_of_known_splicesites	FALSE	canonical	0	0	junction_16	26.7032908822983	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACATATGAAGACATATATG	1535	False	NA	15	True	ATTAAA	-17	NA	35915245	36041469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169_36015309_36024048_36024111_36030513_36030569_36032176_36032258_36040649
ENSMUSG00000029095.18_7	chr5	+	1921	15	NIC	ENSMUSG00000029095.18	novel	3042	19	NA	NA	-21	-13	combination_of_known_junctions	FALSE	canonical	3	29	junction_12	19.8329760443437	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAACCAAGACCTCC	1536	False	NA	-8	True	NA	NA	NA	35915246	36015517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169
ENSMUSG00000029095.18_8	chr5	+	2413	15	NIC	ENSMUSG00000029095.18	novel	2579	18	NA	NA	-21	-23	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	27.0672820043321	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATATGAAGACATATATGC	1536	False	NA	16	True	ATTAAA	-18	NA	35915246	36041470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36014471_36014525_36015169_36015309_36032176_36032258_36040649
ENSMUSG00000029095.18_9	chr5	+	1715	13	NIC	ENSMUSG00000029095.18	novel	2579	18	NA	NA	-19	-16	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	18.719234018042	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAACAAAACCAAGACC	1538	False	NA	-11	True	NA	NA	NA	35915248	36015514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36014471_36014525_36015169
ENSMUSG00000029096.16_0	chr5	-	2446	9	FSM	ENSMUSG00000029096.16	ENSMUST00000087629.10	2750	9	285	19	-25	-19	multi-exon	FALSE	canonical	1	1	junction_1	0.484122918275927	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGCTGTCAACCAGAGAAG	NA	False	NA	NA	False	ATTAAA	-13	NA	35836841	35809385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_35810467_35811414_35811511_35812887_35812937_35821306_35821422_35822757_35822791_35823393_35823589_35825526_35825750_35828375_35828476_35836287
ENSMUSG00000029096.16_2	chr5	-	1888	7	FSM	ENSMUSG00000029096.16	ENSMUST00000114233.3	1901	7	11	2	1	-2	multi-exon	FALSE	canonical	1	1	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTGCTAATCTAAGTTC	NA	False	NA	NA	False	AATAAA	-17	NA	35836805	35818904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_35819609_35821306_35821422_35822757_35822791_35823393_35823589_35825526_35825750_35828375_35828476_35836287
ENSMUSG00000029097.12_1	chr5	-	2777	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	5	1008	5	-1008	multi-exon	FALSE	canonical	3	72	junction_3	7.3	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGCCAAGGGCTTCACA	7631	False	NA	-8	True	AATAAA	-13	NA	35732409	35714554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
ENSMUSG00000029097.12_18	chr5	-	2003	9	ISM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	2192	1116	1796	-1116	3prime_fragment	FALSE	canonical	3	72	junction_3	8.07677998957505	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGAGCTAAATGTCCTGG	9818	False	NA	-5	True	AAAAAG	-14	NA	35730222	35714662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046
ENSMUSG00000029097.12_4	chr5	-	3724	11	NNC	ENSMUSG00000029097.12	novel	3790	11	NA	NA	-5	-23	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	21.9474372080204	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCTAAGAAAAGAACAGT	7640	False	NA	NA	False	AATATA	-4	NA	35732400	35713569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730238_35731423_35731539_35731902
ENSMUSG00000029097.12_5	chr5	-	5676	1	FSM	ENSMUSG00000106928.2	ENSMUST00000201742.2	2705	1	-2975	4	-2975	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGTTTGCCTGTGGTTT	8328	False	NA	NA	False	NA	NA	NA	35714283	35708607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_35708600_35714300
ENSMUSG00000029098.18_0	chr5	+	3940	19	NIC	ENSMUSG00000029098.18	novel	3976	19	NA	NA	-10	-4	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	12.8490764427681	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGCCCTGCTTTCTCCCC	NA	False	NA	20	True	AATAAA	-11	NA	35740411	35771141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35740479_35741219_35741316_35745502_35745658_35745962_35746197_35746519_35746595_35747037_35747128_35749419_35749564_35751653_35751743_35755658_35755756_35757035_35757219_35758846_35758970_35760264_35760386_35761957_35762081_35762550_35762665_35764425_35764542_35765601_35765777_35766363_35766432_35767079_35767167_35769358
ENSMUSG00000029098.18_26	chr5	+	2870	10	ISM	ENSMUSG00000029098.18	ENSMUST00000068947.14	3976	19	16671	8	-4903	-8	3prime_fragment	FALSE	canonical	3	47	junction_9	6.95665592999935	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAAGCCCTGCTTTCT	NA	False	NA	16	True	AATAAA	-7	NA	35757054	35771137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_35757219_35758846_35758970_35760264_35760386_35761957_35762081_35762550_35762665_35764425_35764542_35765601_35765777_35766363_35766432_35767079_35767167_35769358
ENSMUSG00000029098.18_31	chr5	+	2476	1	FSM	ENSMUSG00000029098.18	ENSMUST00000201659.2	1789	1	1225	-1912	1225	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCCTGCTTTCTCCCCTG	NA	False	NA	22	True	AATAAA	-13	NA	35768667	35771143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_35768700_35771100
ENSMUSG00000029098.18_4	chr5	+	4093	19	FSM	ENSMUSG00000029098.18	ENSMUST00000114237.8	2956	19	49	-1186	-2	-8	multi-exon	FALSE	canonical	3	8	junction_1	14.5314686197546	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAAGCCCTGCTTTCT	NA	False	NA	16	True	AATAAA	-7	NA	35740443	35771137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_35740664_35741219_35741320_35745502_35745658_35745962_35746197_35746519_35746595_35747037_35747128_35749419_35749564_35751653_35751743_35755658_35755756_35757035_35757219_35758846_35758970_35760264_35760386_35761957_35762081_35762550_35762665_35764425_35764542_35765601_35765777_35766363_35766432_35767079_35767167_35769358
ENSMUSG00000029098.18_7	chr5	+	3943	19	FSM	ENSMUSG00000029098.18	ENSMUST00000068947.14	3976	19	25	8	-13	-8	multi-exon	FALSE	canonical	3	46	junction_8	8.72982683351794	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAAGCCCTGCTTTCT	NA	False	NA	16	True	AATAAA	-7	NA	35740408	35771137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_35740479_35741219_35741320_35745502_35745658_35745962_35746197_35746519_35746595_35747037_35747128_35749419_35749564_35751653_35751743_35755658_35755756_35757035_35757219_35758846_35758970_35760264_35760386_35761957_35762081_35762550_35762665_35764425_35764542_35765601_35765777_35766363_35766432_35767079_35767167_35769358
ENSMUSG00000029101.17_0	chr5	+	5151	16	NIC	ENSMUSG00000029101.17	novel	5472	17	NA	NA	11	0	intron_retention	FALSE	canonical	2	7	junction_15	4.72534537244516	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACTGGACTGGCTGGAAA	8645	False	NA	12	True	AATAAA	-12	NA	35106802	35190786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35106869_35122116_35124100_35132560_35132678_35156551_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935_35180116_35180372_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354_35187435_35189214
ENSMUSG00000029101.17_1	chr5	+	5301	17	FSM	ENSMUSG00000029101.17	ENSMUST00000030984.14	5472	17	21	150	18	3	multi-exon	FALSE	canonical	2	8	junction_15	4.70206071845101	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGACTGGCTGGAAACTC	8652	False	NA	15	True	AATAAA	-15	NA	35106809	35190789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_35106869_35122116_35124100_35132560_35132678_35156551_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935_35180116_35180372_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354_35187435_35187811_35187966_35189214
ENSMUSG00000029101.17_10	chr5	+	3248	15	FSM	ENSMUSG00000029101.17	ENSMUST00000114284.8	3624	15	376	0	211	0	multi-exon	FALSE	canonical	2	2	junction_1	6.71010508144855	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACTGGACTGGCTGGAAA	NA	False	NA	12	True	AATAAA	-12	NA	35147103	35190786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_35147213_35156551_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935_35180116_35180372_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354_35187435_35187811_35187966_35189214
ENSMUSG00000029101.17_13	chr5	+	3556	1	NIC	ENSMUSG00000029101.17	novel	5472	17	NA	NA	2920	3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGACTGGCTGGAAACTC	NA	False	NA	15	True	AATAAA	-15	NA	35187233	35190789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35187200_35190800
ENSMUSG00000029101.17_2	chr5	+	5569	16	NIC	ENSMUSG00000029101.17	novel	5472	17	NA	NA	0	-7	intron_retention	TRUE	canonical	2	8	junction_14	4.54899256246186	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTCACCACTGGACTGG	8631	False	NA	5	True	AATAAA	-5	NA	35106788	35190779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35106869_35122116_35124100_35132560_35132678_35156551_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354_35187435_35187811_35187966_35189214
ENSMUSG00000029101.17_3	chr5	+	5322	17	NNC	ENSMUSG00000029101.17	novel	5472	17	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_1	6.60935653070706	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGGACTGGCTGGAAACT	8634	False	NA	14	True	AATAAA	-14	NA	35106791	35190788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_35106873_35122116_35124100_35132560_35132678_35156551_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935_35180116_35180372_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354_35187435_35187811_35187966_35189214
ENSMUSG00000029101.17_4	chr5	+	3842	15	ISM	ENSMUSG00000029101.17	ENSMUST00000030984.14	5472	17	12	3244	9	261	5prime_fragment	FALSE	canonical	3	13	junction_8	3.39342100577706	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGCGTCTAGACTCACT	8643	False	NA	NA	False	CATAAA	-36	NA	35106800	35187695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_35106869_35122116_35124100_35132560_35132678_35156551_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935_35180116_35180372_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354
ENSMUSG00000029101.17_8	chr5	+	3701	16	ISM	ENSMUSG00000029101.17	ENSMUST00000087684.11	4713	17	1546	6194	1546	8	5prime_fragment	FALSE	canonical	2	8	junction_14	4.83689523925788	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGCTGGAAACTCCTTTC	NA	False	NA	20	True	AATAAA	-20	NA	35123662	35190794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_35124100_35132560_35132678_35156551_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935_35180116_35180372_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354_35187435_35187811_35187966_35189214
ENSMUSG00000029103.17_1	chr5	-	1435	8	FSM	ENSMUSG00000029103.17	ENSMUST00000030986.15	2981	8	67	1479	-3	89	multi-exon	FALSE	canonical	3	809	junction_2	73.9092107153867	924	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTCGAGTCCTTGCCTG	NA	False	NA	-9	True	AATACA	-14	NA	35263043	35250323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
ENSMUSG00000029104.16_0	chr5	+	10057	67	FSM	ENSMUSG00000029104.16	ENSMUST00000080036.3	13215	67	15	3143	-2	-3143	multi-exon	FALSE	canonical	3	38	junction_2	19.3734266519568	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAACTTTTCCTATGCC	1571	False	NA	7	True	AGTAAA	-13	NA	34919102	35066735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34919454_34940085_34940170_34947610_34947732_34951448_34951509_34953235_34953316_34956720_34956860_34961061_34961204_34961845_34962025_34963916_34964122_34965212_34965261_34968778_34968860_34970195_34970537_34974486_34974614_34975041_34975161_34975942_34976055_34976240_34976379_34977294_34977454_34977545_34977644_34979054_34979195_34981204_34981269_34981701_34981803_34982158_34982306_34983290_34983412_34984598_34984676_34985816_34985969_34987020_34987224_34989910_34990038_34991604_34991733_35000134_35000246_35003333_35003412_35004797_35005022_35006074_35006154_35006280_35006443_35008562_35008619_35009426_35009576_35010103_35010241_35012018_35012136_35021589_35021713_35021989_35022223_35023918_35024062_35028053_35028262_35033249_35033392_35034073_35034254_35034368_35034546_35034771_35034849_35036146_35036286_35037147_35037271_35040193_35040408_35041315_35041462_35042695_35042874_35043848_35043945_35046673_35046862_35048694_35048822_35051688_35051790_35052682_35052838_35053227_35053368_35054231_35054315_35055872_35056004_35056140_35056271_35057115_35057272_35060552_35060744_35062657_35062773_35062874_35063089_35063442_35063549_35064427_35064591_35064776_35064938_35065975
ENSMUSG00000029104.16_33	chr5	+	3096	18	ISM	ENSMUSG00000029104.16	ENSMUST00000080036.3	13215	67	123711	3139	-996	-3139	3prime_fragment	FALSE	canonical	3	79	junction_3	6.1216050544695	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTTTCCTATGCCCGTG	237	False	NA	11	True	AGTAAA	-17	NA	35042798	35066739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_35042874_35043848_35043945_35046673_35046862_35048694_35048822_35051688_35051790_35052682_35052838_35053227_35053368_35054231_35054315_35055872_35056004_35056140_35056271_35057115_35057272_35060552_35060744_35062657_35062773_35062874_35063089_35063442_35063549_35064427_35064591_35064776_35064938_35065975
ENSMUSG00000029104.16_35	chr5	+	2844	16	ISM	ENSMUSG00000029104.16	ENSMUST00000080036.3	13215	67	127663	3143	2956	-3143	3prime_fragment	FALSE	canonical	3	79	junction_1	6.00518294660722	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAACTTTTCCTATGCC	262	False	NA	7	True	AGTAAA	-13	NA	35046750	35066735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_35046862_35048694_35048822_35051688_35051790_35052682_35052838_35053227_35053368_35054231_35054315_35055872_35056004_35056140_35056271_35057115_35057272_35060552_35060744_35062657_35062773_35062874_35063089_35063442_35063549_35064427_35064591_35064776_35064938_35065975
ENSMUSG00000029104.16_36	chr5	+	2689	15	ISM	ENSMUSG00000029104.16	ENSMUST00000080036.3	13215	67	129651	3143	4944	-3143	3prime_fragment	FALSE	canonical	3	81	junction_2	5.08298482133063	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAACTTTTCCTATGCC	2250	False	NA	7	True	AGTAAA	-13	NA	35048738	35066735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_35048822_35051688_35051790_35052682_35052838_35053227_35053368_35054231_35054315_35055872_35056004_35056140_35056271_35057115_35057272_35060552_35060744_35062657_35062773_35062874_35063089_35063442_35063549_35064427_35064591_35064776_35064938_35065975
ENSMUSG00000029104.16_39	chr5	+	2321	12	ISM	ENSMUSG00000029104.16	ENSMUST00000080036.3	13215	67	134169	3143	9462	-3143	3prime_fragment	FALSE	canonical	3	87	junction_3	4.04724168900947	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAACTTTTCCTATGCC	6768	False	NA	7	True	AGTAAA	-13	NA	35053256	35066735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_35053368_35054231_35054315_35055872_35056004_35056140_35056271_35057115_35057272_35060552_35060744_35062657_35062773_35062874_35063089_35063442_35063549_35064427_35064591_35064776_35064938_35065975
ENSMUSG00000029104.16_41	chr5	+	2081	10	ISM	ENSMUSG00000029104.16	ENSMUST00000080036.3	13215	67	136836	3138	12129	-3138	3prime_fragment	FALSE	canonical	3	87	junction_1	3.16227766016838	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTTCCTATGCCCGTGT	9435	False	NA	12	True	AGTAAA	-18	NA	35055923	35066740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_35056004_35056140_35056271_35057115_35057272_35060552_35060744_35062657_35062773_35062874_35063089_35063442_35063549_35064427_35064591_35064776_35064938_35065975
ENSMUSG00000029104.16_47	chr5	+	2754	1	ISM	ENSMUSG00000029104.16	ENSMUST00000080036.3	13215	67	147002	1035	22295	-1035	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAATGCACTTCAGCATG	9012	False	NA	-6	True	AATAAA	-17	NA	35066089	35068843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_35066100_35068800
ENSMUSG00000029104.16_69	chr5	+	3459	20	ISM	ENSMUSG00000029104.16	ENSMUST00000080036.3	13215	67	121202	3143	-3505	-3143	3prime_fragment	FALSE	canonical	3	65	junction_1	10.0549735491841	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAACTTTTCCTATGCC	NA	False	NA	7	True	AGTAAA	-13	NA	35040289	35066735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_35040408_35041315_35041462_35042695_35042874_35043848_35043945_35046673_35046862_35048694_35048822_35051688_35051790_35052682_35052838_35053227_35053368_35054231_35054315_35055872_35056004_35056140_35056271_35057115_35057272_35060552_35060744_35062657_35062773_35062874_35063089_35063442_35063549_35064427_35064591_35064776_35064938_35065975
ENSMUSG00000029106.15_1	chr5	+	3838	15	FSM	ENSMUSG00000029106.15	ENSMUST00000114340.9	3761	15	-90	13	14	1	multi-exon	FALSE	canonical	3	389	junction_14	43.2925501438664	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTGTCTAAGGTTGGG	NA	False	NA	13	True	AATAAA	-14	NA	34731126	34789639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34787813
ENSMUSG00000029106.15_2	chr5	+	5802	14	ISM	ENSMUSG00000029106.15	ENSMUST00000114340.9	3761	15	-97	12	7	2	intron_retention	FALSE	canonical	3	470	junction_10	26.6866542450135	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTAAGGTTGGGG	NA	False	NA	14	True	AATAAA	-15	NA	34731119	34789640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758
ENSMUSG00000029106.15_3	chr5	+	3871	16	FSM	ENSMUSG00000029106.15	ENSMUST00000114338.9	4007	16	121	15	16	-1	multi-exon	FALSE	canonical	3	43	junction_14	162.471932618803	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTCCTTGTCTAAGGTTG	NA	False	NA	11	True	AATAAA	-12	NA	34731128	34789637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34786479_34786517_34787813
ENSMUSG00000029106.15_4	chr5	+	3931	15	NIC	ENSMUSG00000029106.15	novel	3898	16	NA	NA	14	1	combination_of_known_junctions	FALSE	canonical	3	16	junction_10	135.779157427923	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTGTCTAAGGTTGGG	NA	False	NA	13	True	AATAAA	-14	NA	34731126	34789639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774252_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34787813
ENSMUSG00000029106.15_5	chr5	+	3926	16	NIC	ENSMUSG00000029106.15	novel	4007	16	NA	NA	14	2	combination_of_known_junctions	FALSE	canonical	3	50	junction_12	159.558752676108	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTAAGGTTGGGG	NA	False	NA	14	True	AATAAA	-15	NA	34731126	34789640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34778175_34778263_34782622_34782780_34785758_34785858_34787813
ENSMUSG00000029106.15_92	chr5	+	1800	1	ISM	ENSMUSG00000029106.15	ENSMUST00000114338.9	4007	16	56833	12	10526	2	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTAAGGTTGGGG	NA	False	NA	14	True	AATAAA	-15	NA	34787840	34789640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_34787800_34789600
ENSMUSG00000029110.14_1	chr5	+	2907	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182709.8	3046	8	130	9	0	6	multi-exon	FALSE	canonical	0	0	junction_4	927.964241042219	3080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAGTATCTTTCATTTA	NA	False	NA	19	True	AATAAA	-9	NA	34493762	34510774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
ENSMUSG00000029110.14_2	chr5	+	2858	8	FSM	ENSMUSG00000029110.14	ENSMUST00000030992.13	2895	8	31	6	-6	6	multi-exon	FALSE	canonical	0	0	junction_4	1003.41470052242	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAGTATCTTTCATTTA	NA	False	NA	19	True	AATAAA	-9	NA	34493754	34510774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
ENSMUSG00000029110.14_6	chr5	+	2895	7	NIC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	2	6	combination_of_known_splicesites	FALSE	canonical	3	1293	junction_4	355.934919144872	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAGTATCTTTCATTTA	NA	False	NA	19	True	AATAAA	-9	NA	34493764	34510774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34507255_34507416_34508133_34508183_34508574
ENSMUSG00000029110.14_83	chr5	+	1737	1	FSM	ENSMUSG00000029110.14	ENSMUST00000183265.2	4514	1	578	2199	578	6	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAGTATCTTTCATTTA	NA	False	NA	19	True	AATAAA	-9	NA	34509037	34510774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34509000_34510800
ENSMUSG00000029111.8_0	chr5	-	2160	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	154	266	-9	-266	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	831	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAGCCCACAGAGCTG	NA	False	NA	-13	True	ATTAAA	-14	NA	34093603	34055525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
ENSMUSG00000029119.10_0	chr5	-	3303	19	FSM	ENSMUSG00000029119.10	ENSMUST00000031002.10	3330	19	33	-6	33	6	multi-exon	FALSE	canonical	3	157	junction_7	26.3739138796905	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCAAGCCAGACCTCTC	982	False	NA	-7	True	AATAAA	-27	NA	36987964	36964258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973588_36974899_36975042_36975805_36975997_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971_36987119_36987781
ENSMUSG00000029119.10_14	chr5	-	1541	8	ISM	ENSMUSG00000029119.10	ENSMUST00000031002.10	3330	19	15994	0	-1696	0	3prime_fragment	FALSE	canonical	3	157	junction_7	33.0448056988306	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATGTTCAAGCCAGA	NA	False	NA	-13	True	AATAAA	-21	NA	36972003	36964264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672
ENSMUSG00000029120.11_1	chr5	+	4081	9	FSM	ENSMUSG00000029120.11	ENSMUST00000031003.11	4088	9	1	6	1	-6	multi-exon	TRUE	canonical	3	174	junction_3	14.0890028036054	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAAGATGAGGCTCGCAA	NA	False	NA	3	True	AATAAA	-15	NA	37025857	37112416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_37026235_37080311_37080410_37083628_37083795_37084874_37084988_37088579_37088758_37097440_37097606_37104411_37104582_37106896_37106989_37109694
ENSMUSG00000029120.11_37	chr5	+	2107	1	ISM	ENSMUSG00000029120.11	ENSMUST00000031003.11	4088	9	84453	6	13536	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAAGATGAGGCTCGCAA	NA	False	NA	3	True	AATAAA	-15	NA	37110309	37112416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_37110300_37112400
ENSMUSG00000029121.17_1	chr5	+	2867	14	FSM	ENSMUSG00000029121.17	ENSMUST00000031004.11	2906	14	65	-26	-16	-6	multi-exon	FALSE	canonical	1	2	junction_4	2.40069023605034	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGATCTGAGTGGGTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	37403172	37449471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_37403441_37422575_37422665_37426026_37426212_37430690_37430856_37433620_37433683_37435428_37435510_37436206_37436276_37437002_37437124_37437810_37437968_37440195_37440338_37441371_37441543_37443711_37443892_37446148_37446315_37448460
ENSMUSG00000029121.17_3	chr5	+	3066	14	FSM	ENSMUSG00000029121.17	ENSMUST00000114158.9	3051	14	-17	2	-17	-2	multi-exon	FALSE	canonical	1	1	junction_1	2.5903781908435	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGAGTGGGTGTTTTCA	7390	False	NA	NA	False	AATAAA	-19	NA	37399406	37449475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_37399870_37422575_37422665_37426026_37426212_37430690_37430856_37433620_37433683_37435428_37435510_37436206_37436276_37437002_37437124_37437810_37437968_37440195_37440338_37441371_37441543_37443711_37443892_37446148_37446315_37448460
ENSMUSG00000029122.12_0	chr5	-	4268	21	NIC	ENSMUSG00000029122.12	novel	4325	21	NA	NA	-2	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3.16977917211909	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGTTGTTCTTGCCTGTT	NA	False	NA	NA	False	AATAAA	-13	NA	37494224	37456518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_37457806_37458155_37458268_37458901_37458996_37460528_37460656_37464556_37464669_37466375_37466521_37467504_37467712_37468875_37469087_37470772_37470883_37471702_37471916_37473668_37473768_37475506_37475656_37476232_37476450_37477579_37477739_37479393_37479532_37481042_37481142_37482180_37482266_37483681_37483930_37485805_37485890_37490235_37490362_37493978
ENSMUSG00000029122.12_3	chr5	-	4287	21	FSM	ENSMUSG00000029122.12	ENSMUST00000031005.11	4325	21	34	4	6	-4	multi-exon	FALSE	canonical	1	3	junction_11	2.64764045897474	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGTTGTTCTTGCCTGTT	NA	False	NA	NA	False	AATAAA	-13	NA	37494204	37456518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_37457845_37458155_37458268_37458901_37458996_37460528_37460656_37464556_37464669_37466375_37466521_37467504_37467712_37468875_37469087_37470772_37470883_37471702_37471916_37473668_37473768_37475506_37475656_37476232_37476450_37477579_37477739_37479393_37479532_37481042_37481142_37482180_37482266_37483681_37483930_37485805_37485890_37490235_37490362_37493978
ENSMUSG00000029125.15_0	chr5	+	1534	11	FSM	ENSMUSG00000029125.15	ENSMUST00000114126.9	3002	11	519	949	10	-1	multi-exon	FALSE	canonical	3	87	junction_9	9.96794863550169	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTATTGCAGTCAGTGA	NA	False	NA	12	True	AATAAA	-12	NA	38196604	38294160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
ENSMUSG00000029125.15_2	chr5	+	1436	11	FSM	ENSMUSG00000029125.15	ENSMUST00000031008.13	1471	11	34	1	-15	-1	multi-exon	FALSE	canonical	1	3	junction_10	31.04834939252	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTATTGCAGTCAGTGA	NA	False	NA	12	True	AATAAA	-12	NA	38196610	38294160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293698
ENSMUSG00000029126.8_0	chr5	-	1672	5	FSM	ENSMUSG00000029126.8	ENSMUST00000031009.8	2581	5	432	477	-2	466	multi-exon	TRUE	canonical	3	5	junction_1	2.8613807855649	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGCTATTCCTGATT	NA	False	NA	32	True	ATTAAA	-2	NA	38316819	38295012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_38296217_38302052_38302164_38312951_38313069_38316220_38316376_38316734
ENSMUSG00000029127.16_0	chr5	-	4122	8	NIC	ENSMUSG00000029127.16	novel	420	5	NA	NA	-2	-1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	15.5471632690432	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTACTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	38377777	38347079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_38349482_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38370651_38371728_38373790_38373958_38377666
ENSMUSG00000029127.16_10	chr5	-	4236	8	NIC	ENSMUSG00000029127.16	novel	2978	8	NA	NA	0	-3	intron_retention	FALSE	canonical	1	1	junction_5	14.7924415337906	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATGTTTTATATTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	38377769	38357595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38369189_38371728_38373790_38373958_38377666
ENSMUSG00000029127.16_13	chr5	-	2866	4	ISM	ENSMUSG00000029127.16	ENSMUST00000126267.8	2721	7	12968	4	-1262	-1	3prime_fragment	FALSE	canonical	3	33	junction_2	6.64997911442	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTTTTATATTTTGTA	NA	False	NA	NA	False	AATAAA	-18	NA	38364789	38357593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232
ENSMUSG00000029127.16_17	chr5	-	3034	9	NIC	ENSMUSG00000029127.16	novel	2978	8	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	16.9170771707172	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTTTTATATTTTGTA	NA	False	NA	NA	False	AATAAA	-18	NA	38377784	38357593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38369189_38369433_38370651_38371728_38373790_38373958_38377666
ENSMUSG00000029127.16_18	chr5	-	7397	6	NIC	ENSMUSG00000029127.16	novel	2721	7	NA	NA	8	2295	intron_retention	FALSE	canonical	2	5	junction_3	15.4867685460848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTGCTGTCGGTACCA	NA	False	NA	NA	False	AATAAA	-17	NA	38377790	38355128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_38361002_38361088_38361172_38363232_38363307_38370651_38371728_38373790_38373958_38377666
ENSMUSG00000029127.16_2	chr5	-	6673	2	FSM	ENSMUSG00000029127.16	ENSMUST00000146859.2	463	2	-774	-5436	-774	2268	multi-exon	FALSE	canonical	3	33	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAACTATGAAAA	NA	False	NA	NA	False	NA	NA	NA	38361915	38355155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_38361002_38361088
ENSMUSG00000029127.16_22	chr5	-	3081	3	FSM	ENSMUSG00000029127.16	ENSMUST00000114113.3	2645	3	22	-458	-1	458	multi-exon	FALSE	canonical	3	43	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACAGGCTTACATGGTCA	NA	False	NA	NA	False	AAGAAA	-5	NA	38377776	38368923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_38371728_38373790_38373958_38377666
ENSMUSG00000029127.16_28	chr5	-	1706	7	NIC	ENSMUSG00000029127.16	novel	2978	8	NA	NA	0	-1	combination_of_known_junctions	TRUE	canonical	2	6	junction_5	13.6961065027012	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTTTTATATTTTGTA	NA	False	NA	NA	False	AATAAA	-18	NA	38377775	38357593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38373790_38373958_38377666
ENSMUSG00000029127.16_4	chr5	-	4118	6	FSM	ENSMUSG00000029127.16	ENSMUST00000143436.8	1654	6	-4	-2460	-2	2291	multi-exon	FALSE	canonical	2	4	junction_4	15.2918278828922	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAAAAATTGCTGTCGGT	NA	False	NA	NA	False	AATAAA	-13	NA	38377773	38355132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38373790_38373958_38377666
ENSMUSG00000029127.16_5	chr5	-	2781	8	FSM	ENSMUSG00000029127.16	ENSMUST00000094833.10	2978	8	25	172	-1	-3	multi-exon	FALSE	canonical	3	18	junction_5	10.0772526220277	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATGTTTTATATTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	38377776	38357595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38370651_38371728_38373790_38373958_38377666
ENSMUSG00000029127.16_6	chr5	-	3831	5	NIC	ENSMUSG00000029127.16	novel	1654	6	NA	NA	3	-1	intron_retention	FALSE	canonical	2	4	junction_3	17.0440605490593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTTTTATATTTTGTA	NA	False	NA	NA	False	AATAAA	-18	NA	38377765	38357593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_38361002_38361088_38361172_38363232_38363307_38373790_38373958_38377666
ENSMUSG00000029127.16_9	chr5	-	2735	7	FSM	ENSMUSG00000029127.16	ENSMUST00000126267.8	2721	7	-19	5	-1	-2	multi-exon	FALSE	canonical	2	5	junction_4	14.1391890385081	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATGTTTTATATTTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	38377776	38357594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38370651_38371728_38373790_38373958_38377666
ENSMUSG00000029128.13_3	chr5	-	1635	7	FSM	ENSMUSG00000029128.13	ENSMUST00000031011.12	1635	7	-6	6	-3	-5	multi-exon	FALSE	canonical	3	424	junction_3	45.374980869295	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATGTTTTTTGGGATT	NA	False	NA	-10	True	AATAAA	-8	NA	41865503	41782324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ENSMUSG00000029128.13_4	chr5	-	1729	8	FSM	ENSMUSG00000029128.13	ENSMUST00000201422.4	1697	8	-38	6	-2	-5	multi-exon	FALSE	canonical	3	81	junction_2	195.851880725393	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATGTTTTTTGGGATT	NA	False	NA	-10	True	AATAAA	-8	NA	41865502	41782324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_41783206_41784329_41784425_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ENSMUSG00000029130.13_1	chr5	+	1421	9	NIC	ENSMUSG00000029130.13	novel	1565	10	NA	NA	0	-35	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	11.1242977306435	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTTATTGCATTAAAAAC	NA	False	NA	13	True	AATATA	-19	NA	29401003	29430444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_29401083_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
ENSMUSG00000029130.13_10	chr5	+	1471	10	FSM	ENSMUSG00000029130.13	ENSMUST00000001247.12	1600	10	64	65	3	-24	multi-exon	FALSE	canonical	3	8	junction_1	13.0421917418852	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAAACAGCATGTTCGT	NA	False	NA	24	True	AATATA	-30	NA	29401058	29430455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_29401111_29401577_29401644_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
ENSMUSG00000029130.13_4	chr5	+	1515	9	NIC	ENSMUSG00000029130.13	novel	1600	10	NA	NA	9	-1	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	12.7646974112197	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTAGCTAGTGTCTG	NA	False	NA	88	True	AATAAA	-18	NA	29401012	29430519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_29401111_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
ENSMUSG00000029130.13_5	chr5	+	2282	7	NIC	ENSMUSG00000029130.13	novel	1565	10	NA	NA	1	-42	intron_retention	FALSE	canonical	3	13	junction_1	11.7957148528137	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGGTCTTTATTGCAT	NA	False	NA	6	True	AATATA	-12	NA	29401004	29430437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_29401083_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29411803_29429114_29429283_29430040
ENSMUSG00000029131.15_0	chr5	+	2507	10	FSM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	307	104	0	-104	multi-exon	FALSE	canonical	3	618	junction_9	548.115559591832	1119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCCAGCTCTCTTGTGGTC	4601	False	NA	3	True	AATAAA	-16	NA	29940992	29991372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
ENSMUSG00000029131.15_1	chr5	+	1535	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	55	15	0	-15	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTGGGGTCTGCAGCCT	4601	False	NA	27	True	AATAAA	-27	NA	29940992	29972086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
ENSMUSG00000029135.11_0	chr5	+	1778	4	FSM	ENSMUSG00000029135.11	ENSMUST00000031017.11	6537	4	629	4130	257	-1	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCTGGGGAAGCAGATGA	NA	False	NA	NA	False	AGTAAA	-15	NA	32293773	32311056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_32294150_32304168_32304421_32307764_32307873_32310014
ENSMUSG00000029136.10_1	chr5	-	1015	8	FSM	ENSMUSG00000029136.10	ENSMUST00000031018.10	1042	8	19	8	19	-8	multi-exon	FALSE	canonical	3	28	junction_1	7.57816411992848	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGCACATGGGTGTGGC	NA	False	NA	-39	True	AATAAA	-15	NA	31854952	31781790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31782001_31805064_31805254_31809152_31809245_31817250_31817416_31823062_31823126_31824204_31824269_31830656_31830790_31854853
ENSMUSG00000029136.10_5	chr5	-	1047	7	ISM	ENSMUSG00000029136.10	ENSMUST00000031018.10	1042	8	24	23035	24	12571	5prime_fragment	FALSE	canonical	3	39	junction_2	4.14996653266291	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGCCAGGCATGCTCTG	NA	False	NA	NA	False	NA	NA	NA	31854947	31804817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_31805254_31809152_31809245_31817250_31817416_31823062_31823126_31824204_31824269_31830656_31830790_31854853
ENSMUSG00000029138.5_0	chr5	+	176	1	FSM	ENSMUSG00000029138.5	ENSMUST00000202441.2	2737	1	1141	1420	1022	-1420	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGAGAGAGTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	31644224	31644400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31644200_31644400
ENSMUSG00000029141.17_1	chr5	+	2414	13	FSM	ENSMUSG00000029141.17	ENSMUST00000114533.9	2424	13	10	0	-7	0	multi-exon	FALSE	canonical	3	47	junction_10	19.394300422776	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684348	31711381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31705954_31706026_31708056_31708127_31711082
ENSMUSG00000029141.17_10	chr5	+	1689	7	ISM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	-7	1637	-7	195	5prime_fragment	FALSE	canonical	3	90	junction_1	11.13552872566	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	31684348	31692529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201
ENSMUSG00000029141.17_2	chr5	+	2497	14	NIC	ENSMUSG00000029141.17	novel	2499	14	NA	NA	6	-3	combination_of_known_junctions	FALSE	canonical	3	25	junction_11	26.2556840845094	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGAACTGAGGTGATGA	NA	False	NA	3	True	AGTAAA	-13	NA	31684346	31711378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705957_31706026_31708056_31708127_31711082
ENSMUSG00000029141.17_3	chr5	+	2407	13	NIC	ENSMUSG00000029141.17	novel	2424	13	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_10	26.846270173382	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684352	31711381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31705957_31706026_31708056_31708127_31711082
ENSMUSG00000029141.17_4	chr5	+	2120	8	FSM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	-17	6	0	-6	multi-exon	FALSE	canonical	3	90	junction_1	11.004637241469	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTATTGATTTGTTTTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	31684338	31694160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481
ENSMUSG00000029141.17_6	chr5	+	2500	14	FSM	ENSMUSG00000029141.17	ENSMUST00000202950.4	2499	14	-9	8	6	-3	multi-exon	FALSE	canonical	3	47	junction_11	21.8978262140197	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGAACTGAGGTGATGA	NA	False	NA	3	True	AGTAAA	-13	NA	31684346	31711378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705954_31706026_31708056_31708127_31711082
ENSMUSG00000029145.13_0	chr5	-	1708	12	FSM	ENSMUSG00000029145.13	ENSMUST00000114603.8	1966	12	258	0	243	0	multi-exon	FALSE	canonical	3	556	junction_3	55.8517814183514	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGACTCTGCTGCC	NA	False	NA	-10	True	AATAAA	-14	NA	31350100	31344911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925
ENSMUSG00000029145.13_1	chr5	-	1648	13	FSM	ENSMUSG00000029145.13	ENSMUST00000077693.10	2025	13	367	10	-49	0	multi-exon	FALSE	canonical	3	556	junction_3	56.1372326436643	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGACTCTGCTGCC	NA	False	NA	-10	True	AATAAA	-14	NA	31350407	31344911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350336
ENSMUSG00000029145.13_2	chr5	-	1765	13	FSM	ENSMUSG00000029145.13	ENSMUST00000166769.8	1878	13	104	9	-21	0	multi-exon	FALSE	canonical	3	32	junction_12	174.191864205983	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGACTCTGCTGCC	NA	False	NA	-10	True	AATAAA	-14	NA	31350379	31344911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31350115_31350336
ENSMUSG00000029146.15_0	chr5	+	1950	15	FSM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	67	1	0	0	multi-exon	TRUE	canonical	3	351	junction_8	24.4791664857432	493	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGGTTCCCTCTCACT	NA	False	NA	20	True	ATTAAA	-20	NA	31350637	31356243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
ENSMUSG00000029147.12_1	chr5	-	2194	10	FSM	ENSMUSG00000029147.12	ENSMUST00000031032.11	2307	10	100	13	-22	-13	multi-exon	FALSE	canonical	3	595	junction_8	38.6382398699386	958	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAAAGCTAATCGTGCT	NA	False	NA	-18	True	ACTAAA	-5	NA	31377931	31360024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31360629_31360915_31361019_31361373_31361504_31361796_31362032_31362341_31362474_31363381_31363798_31364906_31365040_31365356_31365443_31365730_31365801_31377646
ENSMUSG00000029148.16_0	chr5	+	2161	18	FSM	ENSMUSG00000029148.16	ENSMUST00000031034.12	2203	18	36	6	-3	0	multi-exon	FALSE	canonical	3	461	junction_13	30.9676692663879	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCATCTTGTGTTGTGCT	NA	False	NA	27	True	AATAAA	-15	NA	31398243	31408904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31398347_31401106_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
ENSMUSG00000029148.16_1	chr5	+	2083	19	NIC	ENSMUSG00000029148.16	novel	2221	19	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_2	109.789191939219	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCATCTTGTGTTGTGCT	NA	False	NA	27	True	AATAAA	-15	NA	31398236	31408904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31398347_31401106_31401177_31401261_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
ENSMUSG00000029149.15_0	chr5	+	1103	5	NIC	ENSMUSG00000029149.15	novel	1027	6	NA	NA	-6	0	intron_retention	FALSE	canonical	3	89	junction_4	5.61248608016091	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCCTGATTACAGTTAC	NA	False	NA	6	True	AATAAA	-18	NA	31409043	31410543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31409448_31409535_31409596_31409708_31410134_31410238_31410347_31410437
ENSMUSG00000029149.15_10	chr5	+	1382	2	FSM	ENSMUSG00000029149.15	ENSMUST00000202384.2	773	2	-612	3	-1	-1	multi-exon	FALSE	canonical	3	89	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCTGCCTGATTACAGT	NA	False	NA	3	True	AATAAA	-15	NA	31409067	31410540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31410347_31410437
ENSMUSG00000029149.15_12	chr5	+	1258	1	NIC	ENSMUSG00000029149.15	novel	1027	6	NA	NA	13	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409283	31410541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31409300_31410500
ENSMUSG00000029149.15_14	chr5	+	1222	4	NIC	ENSMUSG00000029149.15	novel	904	7	NA	NA	-3	0	intron_retention	FALSE	canonical	3	42	junction_3	25.3026129524645	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409031	31410541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31409448_31409535_31410134_31410238_31410347_31410441
ENSMUSG00000029149.15_17	chr5	+	988	6	NIC	ENSMUSG00000029149.15	novel	889	7	NA	NA	3	0	intron_retention	FALSE	canonical	3	67	junction_1	12.63962024746	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409052	31410541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31410134_31410238_31410347_31410437
ENSMUSG00000029149.15_2	chr5	+	894	7	FSM	ENSMUSG00000029149.15	ENSMUST00000054829.13	904	7	10	0	0	0	multi-exon	FALSE	canonical	3	42	junction_6	21.1344899788631	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409059	31410541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410441
ENSMUSG00000029149.15_3	chr5	+	926	7	FSM	ENSMUSG00000029149.15	ENSMUST00000201937.4	889	7	-37	0	-3	0	multi-exon	FALSE	canonical	3	67	junction_1	11.9361728465293	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409031	31410541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
ENSMUSG00000029149.15_6	chr5	+	1080	5	NIC	ENSMUSG00000029149.15	novel	904	7	NA	NA	1	0	intron_retention	FALSE	canonical	3	42	junction_4	24.701973605362	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409060	31410541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31409448_31409535_31409596_31409708_31410134_31410238_31410347_31410441
ENSMUSG00000029149.15_7	chr5	+	1197	4	NIC	ENSMUSG00000029149.15	novel	1027	6	NA	NA	-2	1	intron_retention	FALSE	canonical	3	89	junction_3	3.68178700572909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTGATTACAGTTACT	NA	False	NA	7	True	AATAAA	-19	NA	31409063	31410544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31409448_31409535_31410134_31410238_31410347_31410437
ENSMUSG00000029149.15_8	chr5	+	1311	3	FSM	ENSMUSG00000029149.15	ENSMUST00000201565.2	522	3	-786	-3	3	1	multi-exon	FALSE	canonical	3	89	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTGATTACAGTTACT	NA	False	NA	7	True	AATAAA	-19	NA	31409037	31410544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31410134_31410238_31410347_31410437
ENSMUSG00000029149.15_9	chr5	+	1001	6	FSM	ENSMUSG00000029149.15	ENSMUST00000201333.4	1027	6	26	0	1	0	multi-exon	FALSE	canonical	3	82	junction_3	7.52063827078527	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409060	31410541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
ENSMUSG00000029151.15_0	chr5	-	1975	8	FSM	ENSMUSG00000029151.15	ENSMUST00000031037.14	2089	8	107	7	-39	-7	multi-exon	FALSE	canonical	3	15	junction_5	6.02037357305871	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTATTTCTGCAGTCCA	3851	False	NA	-7	True	AATAAA	-12	NA	31250852	31243456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31250606
ENSMUSG00000029151.15_10	chr5	-	2489	7	NIC	ENSMUSG00000029151.15	novel	2089	8	NA	NA	-35	-1	intron_retention	FALSE	canonical	3	15	junction_4	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGCAGTCCAATTCCT	3855	False	NA	-1	True	AATAAA	-18	NA	31250848	31243450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246817_31246897_31247045_31247399_31247582_31250606
ENSMUSG00000029152.14_0	chr5	+	1407	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	7	-11	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACGGAGCAACTGTC	NA	False	NA	4	True	AATAAA	-5	NA	73450156	73471273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029152.14_1	chr5	+	1365	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	19	139	4	-11	multi-exon	FALSE	canonical	3	746	junction_1	106.002063659157	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACGGAGCAACTGTC	NA	False	NA	4	True	AATAAA	-5	NA	73450153	73471273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029152.14_27	chr5	+	468	1	ISM	ENSMUSG00000029152.14	ENSMUST00000071081.13	1311	8	20689	17	9346	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAACTGTCATTCACATTT	NA	False	NA	14	True	AATAAA	-15	NA	73470815	73471283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_73470800_73471300
ENSMUSG00000029153.12_0	chr5	-	2132	7	FSM	ENSMUSG00000029153.12	ENSMUST00000087195.9	2554	7	400	22	-34	-8	multi-exon	FALSE	canonical	3	44	junction_6	41.8107508768844	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCACAAGGCAGAGCC	NA	False	NA	-23	True	AATAAA	-13	NA	73495935	73479563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_73481191_73483623_73483742_73485005_73485054_73486609_73486664_73489446_73489544_73493162_73493289_73495873
ENSMUSG00000029153.12_1	chr5	-	1346	1	ISM	ENSMUSG00000029153.12	ENSMUST00000200830.4	2384	6	15389	15	14999	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGGCAGAGCCAATACGC	NA	False	NA	-16	True	AATAAA	-20	NA	73480902	73479556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73479600_73480900
ENSMUSG00000029153.12_6	chr5	-	5825	5	NIC	ENSMUSG00000029153.12	novel	2378	6	NA	NA	-34	-12	intron_retention	FALSE	canonical	3	44	junction_4	49.595236666438	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGAAAAATCACAAGGCAG	NA	False	NA	-27	True	AATAAA	-9	NA	73495935	73479567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_73485054_73486609_73486664_73489446_73489544_73493162_73493289_73495873
ENSMUSG00000029156.12_1	chr5	-	3135	5	NIC	ENSMUSG00000029156.12	novel	3786	6	NA	NA	67	-858	intron_retention	FALSE	canonical	3	39	junction_4	20.3638773321782	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAACCCTATATTACAAA	NA	False	NA	NA	False	AATAAA	-17	NA	73805066	73790949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_73793042_73796725_73797324_73798025_73798212_73801614_73801825_73805017
ENSMUSG00000029156.12_12	chr5	-	2800	5	ISM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	3321	858	-1	-858	3prime_fragment	FALSE	canonical	3	62	junction_3	13.7727085208393	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAACCCTATATTACAAA	NA	False	NA	NA	False	AATAAA	-17	NA	73801812	73790949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614
ENSMUSG00000029156.12_3	chr5	-	3080	8	NNC	ENSMUSG00000029156.12	novel	3786	6	NA	NA	-18580	-859	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	30.3052497641136	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGAACCCTATATTACAA	NA	False	NA	NA	False	AATAAA	-16	NA	73823713	73790950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73817744_73817831_73823363_73823482_73823648
ENSMUSG00000029156.12_4	chr5	-	2862	6	FSM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	60	864	60	-864	multi-exon	FALSE	canonical	3	39	junction_5	18.2756668824971	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCCACAGAACCCTATAT	NA	False	NA	NA	False	AATAAA	-11	NA	73805073	73790955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73805017
ENSMUSG00000029156.12_7	chr5	-	2471	4	ISM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	7053	858	3731	-858	3prime_fragment	FALSE	canonical	3	62	junction_3	3.55902608401044	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAACCCTATATTACAAA	NA	False	NA	NA	False	AATAAA	-17	NA	73798080	73790949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025
ENSMUSG00000029156.12_9	chr5	-	1930	1	ISM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	12254	858	8932	-858	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAACCCTATATTACAAA	NA	False	NA	NA	False	AATAAA	-17	NA	73792879	73790949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73790900_73792900
ENSMUSG00000029161.8_0	chr5	-	1381	6	FSM	ENSMUSG00000029161.9	ENSMUST00000031051.9	1442	6	58	3	58	-3	multi-exon	FALSE	canonical	3	13	junction_4	4.51663591625449	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCATGTGTCCTTGGTC	5354	False	NA	-2	True	AATAAA	-22	NA	31102877	31090489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31091333_31091503_31091626_31091722_31091794_31091886_31091953_31093221_31093325_31102701
ENSMUSG00000029162.16_0	chr5	+	1329	7	FSM	ENSMUSG00000029162.16	ENSMUST00000201571.4	1087	7	-47	-195	-47	-4	multi-exon	FALSE	canonical	3	16	junction_1	5.24933858267454	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCTTTGTCTGTCTGT	1095	False	NA	2	True	AATAAA	-11	NA	31078886	31088585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31079352_31082082_31082200_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
ENSMUSG00000029163.10_0	chr5	+	3665	8	FSM	ENSMUSG00000029163.10	ENSMUST00000031055.8	3852	8	176	11	-161	-11	multi-exon	TRUE	canonical	2	6	junction_1	4.70345075232981	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTACAAAACATAGCTATTC	NA	False	NA	11	True	AATAAA	-16	NA	31070921	31078610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31071389_31072325_31072452_31072860_31073082_31074277_31076204_31076599_31076717_31077274_31077293_31077423_31077562_31077958
ENSMUSG00000029163.10_3	chr5	+	1836	5	ISM	ENSMUSG00000029163.10	ENSMUST00000031055.8	3852	8	4547	11	-1972	-11	3prime_fragment	FALSE	canonical	2	7	junction_3	4.60298815988049	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTACAAAACATAGCTATTC	428	False	NA	11	True	AATAAA	-16	NA	31075292	31078610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_31076204_31076599_31076717_31077274_31077293_31077423_31077562_31077958
ENSMUSG00000029165.18_10	chr5	+	2457	11	ISM	ENSMUSG00000029165.18	ENSMUST00000202060.4	3121	12	341	7395	-11	-2	5prime_fragment	FALSE	canonical	3	26	junction_1	6.64529909033446	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACGCTGCAGCCTGTCCT	NA	False	NA	NA	False	AATAAA	-16	NA	31046658	31053436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_31046869_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109
ENSMUSG00000029165.18_13	chr5	+	3778	17	NIC	ENSMUSG00000029165.18	novel	3296	17	NA	NA	2	-9	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	12.3888811036348	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAATCCAGGTGTAGTT	NA	False	NA	1	True	AATAAA	-9	NA	31046301	31064001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31046869_31047463_31047725_31047942_31048115_31048217_31048305_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974_31063106_31063459
ENSMUSG00000029165.18_16	chr5	+	3623	15	NIC	ENSMUSG00000029165.18	novel	3199	15	NA	NA	5	-9	combination_of_known_junctions	FALSE	canonical	3	6	junction_13	11.0787993897519	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAATCCAGGTGTAGTT	NA	False	NA	1	True	AATAAA	-9	NA	31046322	31064001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31046869_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062974_31063106_31063459
ENSMUSG00000029165.18_18	chr5	+	3654	16	NIC	ENSMUSG00000029165.18	novel	3579	16	NA	NA	-4	-7	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	6.71118469422501	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCCAGGTGTAGTTGC	NA	False	NA	3	True	AATAAA	-11	NA	31046340	31064003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31046869_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974_31063106_31063459
ENSMUSG00000029165.18_23	chr5	+	3113	12	FSM	ENSMUSG00000029165.18	ENSMUST00000202060.4	3121	12	4	4	4	-4	multi-exon	FALSE	canonical	3	26	junction_1	7.05585742252082	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATACCCTGGATGACTAC	NA	False	NA	NA	False	AATAAA	-10	NA	31046321	31060827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31046869_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396
ENSMUSG00000029165.18_26	chr5	+	4356	16	NIC	ENSMUSG00000029165.18	novel	3296	17	NA	NA	3	-7	intron_retention	FALSE	canonical	3	6	junction_2	12.5485722959493	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCCAGGTGTAGTTGC	NA	False	NA	3	True	AATAAA	-11	NA	31046320	31064003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31047725_31047942_31048115_31048217_31048305_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974_31063106_31063459
ENSMUSG00000029165.18_31	chr5	+	3253	16	FSM	ENSMUSG00000029165.18	ENSMUST00000201917.4	3579	16	20	306	-1	-7	multi-exon	TRUE	canonical	2	6	junction_1	10.2792131129879	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCCAGGTGTAGTTGC	NA	False	NA	3	True	AATAAA	-11	NA	31046298	31064003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31046426_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974_31063106_31063459
ENSMUSG00000029165.18_33	chr5	+	3690	15	NIC	ENSMUSG00000029165.18	novel	3121	12	NA	NA	-13	-9	intron_retention	FALSE	canonical	3	26	junction_1	6.44165335602465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAATCCAGGTGTAGTT	NA	False	NA	1	True	AATAAA	-9	NA	31046656	31064001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31046869_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974
ENSMUSG00000029165.18_6	chr5	+	3910	15	ISM	ENSMUSG00000029165.18	ENSMUST00000201917.4	3579	16	401	306	10	-7	3prime_fragment	FALSE	canonical	3	30	junction_14	5.87497286142234	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCCAGGTGTAGTTGC	NA	False	NA	3	True	AATAAA	-11	NA	31046679	31064003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974_31063106_31063459
ENSMUSG00000029166.15_0	chr5	+	3591	5	NIC	ENSMUSG00000029166.15	novel	2442	6	NA	NA	-4	-2	intron_retention	FALSE	canonical	2	5	junction_2	4.49305018890286	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCATGATTTCCTCAATT	2315	False	NA	11	True	AATAAA	-11	NA	30972093	31023401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_30972243_31019150_31019279_31019841_31022073_31022158_31022312_31022471
ENSMUSG00000029166.15_1	chr5	+	1813	7	FSM	ENSMUSG00000029166.15	ENSMUST00000200692.4	1816	7	3	0	3	0	multi-exon	FALSE	canonical	2	5	junction_2	4.56131072780134	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGATTTCCTCAATTGA	2322	False	NA	13	True	AATAAA	-13	NA	30972100	31023403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30972243_31019150_31019279_31019841_31019988_31020547_31020705_31021917_31022073_31022158_31022312_31022471
ENSMUSG00000029166.15_2	chr5	+	1868	7	FSM	ENSMUSG00000029166.15	ENSMUST00000031058.15	2021	7	104	49	-9	-2	multi-exon	FALSE	canonical	2	2	junction_4	5.53774924194538	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCATGATTTCCTCAATT	2310	False	NA	11	True	AATAAA	-11	NA	30972088	31023401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30972243_31019150_31019279_31019841_31019988_31020547_31020750_31021917_31022073_31022158_31022312_31022471
ENSMUSG00000029166.15_5	chr5	+	2111	3	FSM	ENSMUSG00000029166.15	ENSMUST00000202025.2	488	3	-821	-802	-821	-2	multi-exon	FALSE	canonical	3	15	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCATGATTTCCTCAATT	NA	False	NA	11	True	AATAAA	-11	NA	31021044	31023401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31022073_31022158_31022312_31022471
ENSMUSG00000029168.15_0	chr5	+	4478	13	FSM	ENSMUSG00000029168.15	ENSMUST00000114729.8	5191	13	306	407	-24	-401	multi-exon	FALSE	canonical	3	45	junction_9	9.12718771339538	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTTTCTAGGTTTGTG	NA	False	NA	9	True	AATAAA	-19	NA	30869213	30956312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30869347_30902565_30902831_30934663_30934823_30935318_30935499_30936211_30936281_30938822_30938868_30940538_30940615_30941654_30941812_30946042_30946185_30948835_30948979_30949463_30949672_30951277_30951447_30953580
ENSMUSG00000029168.15_10	chr5	+	3101	3	FSM	ENSMUSG00000029168.15	ENSMUST00000136657.2	676	3	129	-2554	129	-401	multi-exon	FALSE	canonical	3	59	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTTTCTAGGTTTGTG	NA	False	NA	9	True	AATAAA	-19	NA	30949471	30956312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30949672_30951277_30951447_30953580
ENSMUSG00000029168.15_11	chr5	+	2584	1	ISM	ENSMUSG00000029168.15	ENSMUST00000114729.8	5191	13	85219	9	3063	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTCGGCCTCTGTTGTGT	3985	False	NA	2	True	ATTAAA	-14	NA	30954126	30956710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_30954100_30956700
ENSMUSG00000029168.15_3	chr5	+	1411	9	NIC	ENSMUSG00000029168.15	novel	5191	13	NA	NA	-24	95	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	19.6050854372023	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATATTTGTCCCTTATTTT	NA	False	NA	1	True	AATAAA	-10	NA	30869213	30944373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_30869347_30902565_30902831_30934663_30934823_30935318_30935499_30936211_30936281_30938822_30938868_30940538_30940615_30941654_30941812_30944046
ENSMUSG00000029169.12_0	chr5	-	2975	14	FSM	ENSMUSG00000029169.12	ENSMUST00000031061.12	3010	14	19	16	-1	-16	multi-exon	FALSE	canonical	3	749	junction_10	48.0023421519305	1309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAATCTTGGCCCAAGTCC	NA	False	NA	-14	True	AATAAA	-11	NA	52347837	52307560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
ENSMUSG00000029169.12_12	chr5	-	2658	13	ISM	ENSMUSG00000029169.12	ENSMUST00000031061.12	3010	14	5712	16	2612	-16	3prime_fragment	FALSE	canonical	3	749	junction_10	49.1926485022576	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAATCTTGGCCCAAGTCC	NA	False	NA	-14	True	AATAAA	-11	NA	52342144	52307560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809
ENSMUSG00000029169.12_7	chr5	-	5635	13	NIC	ENSMUSG00000029169.12	novel	3010	14	NA	NA	-7	-14	intron_retention	FALSE	canonical	3	749	junction_9	48.9020421068714	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTTGGCCCAAGTCCTT	NA	False	NA	-12	True	AATAAA	-13	NA	52347843	52307558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
ENSMUSG00000029171.13_0	chr5	+	2151	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	23	195	23	-8	multi-exon	FALSE	canonical	3	609	junction_6	76.13589532023	944	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGTAGATTGTAAACAA	NA	False	NA	8	True	AATAAA	-14	NA	64250315	64285499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
ENSMUSG00000029173.13_0	chr5	-	5209	11	FSM	ENSMUSG00000029173.13	ENSMUST00000031069.13	5252	11	9	34	9	-34	multi-exon	FALSE	canonical	3	65	junction_1	10.2493902257647	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACAGATGAAATCTGGAA	NA	False	NA	-10	True	AATAAA	-18	NA	52827041	52797462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567_52813698_52817971_52818075_52821509_52821664_52822577_52822737_52823329_52823449_52826240_52826396_52826916
ENSMUSG00000029173.13_14	chr5	-	2080	5	ISM	ENSMUSG00000029173.13	ENSMUST00000031069.13	5252	11	10	22712	10	-6456	5prime_fragment	FALSE	canonical	3	71	junction_3	7.29297607290741	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTACTTACAAGTCTTA	NA	False	NA	NA	False	ATTAAA	-25	NA	52827040	52820140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_52821664_52822577_52822737_52823329_52823449_52826240_52826396_52826916
ENSMUSG00000029173.13_21	chr5	-	4369	5	ISM	ENSMUSG00000029173.13	ENSMUST00000126574.3	3665	8	9653	-1038	-7867	-51	3prime_fragment	FALSE	canonical	3	65	junction_1	12.3085336250912	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAATAAATCATTGACT	NA	False	NA	-27	True	AATAAA	-33	NA	52813689	52797479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567
ENSMUSG00000029173.13_3	chr5	-	2896	1	ISM	ENSMUSG00000029173.13	ENSMUST00000031069.13	5252	11	26697	29	5469	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAATCTGGAAGTGCA	NA	False	NA	-5	True	AATAAA	-23	NA	52800353	52797457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_52797500_52800400
ENSMUSG00000029173.13_6	chr5	-	4077	11	FSM	ENSMUSG00000029173.13	ENSMUST00000150709.8	5185	11	14	1094	14	-5	multi-exon	FALSE	canonical	2	6	junction_9	24.1412510032103	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACTTGGCCCAGCACTT	NA	False	NA	-8	True	AATAAA	-10	NA	52827036	52798522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567_52813698_52817971_52818075_52821509_52821664_52822577_52822737_52823329_52823449_52826307_52826396_52826916
ENSMUSG00000029174.19_2	chr5	+	5634	20	FSM	ENSMUSG00000029174.19	ENSMUST00000101195.9	5432	20	-210	8	181	-3	multi-exon	FALSE	canonical	3	10	junction_1	77.9717968757502	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTGTGTCTTCGTGTTG	NA	False	NA	2	True	AATAAA	-12	NA	64317343	64508821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_64317849_64330730_64331240_64414057_64414499_64417695_64417786_64420811_64420923_64421668_64421802_64428432_64428525_64432737_64432849_64435258_64435388_64436673_64436761_64439107_64439389_64443287_64443428_64468401_64468588_64473696_64473859_64481793_64481953_64490689_64490935_64492620_64492781_64496904_64497075_64502594_64502769_64507072
ENSMUSG00000029174.19_8	chr5	+	4808	19	FSM	ENSMUSG00000029174.19	ENSMUST00000119756.6	4760	19	-56	8	-56	-3	multi-exon	FALSE	canonical	3	216	junction_12	24.8002513925928	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTGTGTCTTCGTGTTG	8460	False	NA	2	True	AATAAA	-12	NA	64387685	64508821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_64387874_64414057_64414499_64417695_64417786_64420811_64420923_64421668_64421802_64428432_64428525_64432737_64432849_64435258_64435388_64436673_64436761_64439107_64439389_64443287_64443428_64468401_64468588_64473696_64473859_64481793_64481953_64490689_64490935_64492620_64492781_64496904_64497075_64502594_64502769_64507072
ENSMUSG00000029175.18_0	chr5	+	1962	6	FSM	ENSMUSG00000029175.18	ENSMUST00000062962.12	3088	6	17	1109	-3	376	multi-exon	FALSE	canonical	3	97	junction_4	8.49470423263812	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGATGTTTTGACTTCC	6695	False	NA	13	True	NA	NA	NA	30805293	30815964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30805443_30812091_30812165_30812838_30813011_30813231_30813445_30814090_30814202_30814720
ENSMUSG00000029175.18_2	chr5	+	3233	5	NIC	ENSMUSG00000029175.18	novel	3088	6	NA	NA	-3	-59	intron_retention	FALSE	canonical	3	97	junction_3	8.8423695919137	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCTACAATGTTGTTTT	6695	False	NA	-5	True	AATAAA	-6	NA	30805293	30817014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_30805443_30812091_30812165_30812838_30813445_30814090_30814202_30814720
ENSMUSG00000029175.18_3	chr5	+	1940	6	NIC	ENSMUSG00000029175.18	novel	3088	6	NA	NA	0	370	combination_of_known_junctions	FALSE	canonical	1	2	junction_5	45.2035396844097	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCTCCTTGATGTTTTG	6698	False	NA	7	True	NA	NA	NA	30805296	30815958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_30805443_30812091_30812165_30812838_30813011_30813231_30813445_30814090_30814189_30814720
ENSMUSG00000029175.18_8	chr5	+	824	1	ISM	ENSMUSG00000029175.18	ENSMUST00000062962.12	3088	6	9861	1112	1698	373	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCCTTGATGTTTTGACT	83	False	NA	10	True	NA	NA	NA	30815137	30815961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_30815100_30816000
ENSMUSG00000029176.14_0	chr5	+	2676	28	FSM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	114	1064	0	-1	multi-exon	FALSE	canonical	3	314	junction_6	48.5716418249863	652	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTCATACTCTGTTCC	NA	False	NA	12	True	AATAAA	-12	NA	52991467	53024075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
ENSMUSG00000029177.10_0	chr5	+	885	5	FSM	ENSMUSG00000029177.10	ENSMUST00000144742.6	1466	5	151	430	-7	-9	multi-exon	FALSE	canonical	3	1270	junction_1	201.219407612685	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGAGCCGTGGCAGT	9217	False	NA	31	True	AATAAA	-15	NA	30824271	30831744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUSG00000029177.10_1	chr5	+	1020	6	FSM	ENSMUSG00000029177.10	ENSMUST00000133316.8	1031	6	33	-22	-5	-9	multi-exon	FALSE	canonical	3	531	junction_2	579.285905231605	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGAGCCGTGGCAGT	9219	False	NA	31	True	AATAAA	-15	NA	30824273	30831744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30824458_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUSG00000029178.15_26	chr5	+	4371	4	ISM	ENSMUSG00000029178.15	ENSMUST00000166409.6	1562	6	9878	-3412	-131	-7	3prime_fragment	FALSE	canonical	3	286	junction_2	188.560040541173	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTACACATAATCATGT	9447	False	NA	1	True	AATAAA	-9	NA	64979559	64990237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_64979701_64980221_64980373_64984452_64984614_64986319
ENSMUSG00000029178.15_30	chr5	+	2684	1	ISM	ENSMUSG00000029178.15	ENSMUST00000165536.8	5221	6	26829	1	3408	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACATAATCATGTGATTAC	NA	False	NA	7	True	AATAAA	-15	NA	64987559	64990243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_64987600_64990200
ENSMUSG00000029178.15_5	chr5	+	1073	4	FSM	ENSMUSG00000029178.15	ENSMUST00000200587.5	1026	4	-52	5	-52	-5	multi-exon	FALSE	canonical	3	600	junction_1	49.9266128098699	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGTGATGTGCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	64960867	64980447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_64961135_64974077_64974174_64979216_64979701_64980221
ENSMUSG00000029178.15_6	chr5	+	5077	6	FSM	ENSMUSG00000029178.15	ENSMUST00000165536.8	5221	6	137	7	-52	-7	multi-exon	FALSE	canonical	3	286	junction_4	186.681547025945	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTACACATAATCATGT	NA	False	NA	1	True	AATAAA	-9	NA	64960867	64990237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_64961135_64974077_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
ENSMUSG00000029178.15_9	chr5	+	5156	7	NIC	ENSMUSG00000029178.15	novel	5221	6	NA	NA	-52	-7	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	299.882615923853	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTACACATAATCATGT	NA	False	NA	1	True	AATAAA	-9	NA	64960867	64990237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_64961135_64974077_64974174_64979216_64979701_64980221_64980373_64984146_64984226_64984452_64984614_64986319
ENSMUSG00000029179.15_0	chr5	+	2791	12	FSM	ENSMUSG00000029179.15	ENSMUST00000031077.13	5743	12	15	2937	15	1450	multi-exon	FALSE	canonical	3	82	junction_6	13.7197450763007	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTAATTAAATGCATT	NA	False	NA	NA	False	AATAAA	-5	NA	52940410	52977976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462
ENSMUSG00000029179.15_1	chr5	+	2461	13	FSM	ENSMUSG00000029179.15	ENSMUST00000113904.9	2485	13	20	4	-12	-4	multi-exon	FALSE	canonical	3	81	junction_12	14.4327944472148	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTTTCAGTTGTTA	NA	False	NA	17	True	ATTAAA	-13	NA	52940415	52982003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52976608_52980959
ENSMUSG00000029179.15_12	chr5	+	2378	12	NIC	ENSMUSG00000029179.15	novel	2485	13	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	5	junction_5	31.3840513268436	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTTTCAGTTGTTATTC	NA	False	NA	20	True	ATTAAA	-16	NA	52940428	52982006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52976608_52980959
ENSMUSG00000029179.15_4	chr5	+	4205	5	FSM	ENSMUSG00000029179.15	ENSMUST00000157074.6	4194	5	-18	7	14	-7	multi-exon	FALSE	canonical	3	102	junction_3	7.15454401062709	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52940409	52957503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923
ENSMUSG00000029179.15_9	chr5	+	2346	12	NIC	ENSMUSG00000029179.15	novel	2485	13	NA	NA	16	-4	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	29.8768823536452	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTTTCAGTTGTTA	NA	False	NA	17	True	ATTAAA	-13	NA	52940411	52982003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_52940557_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52976608_52980959
ENSMUSG00000029185.15_0	chr5	+	2872	14	FSM	ENSMUSG00000029185.15	ENSMUST00000031080.15	2938	14	42	24	42	-24	multi-exon	FALSE	canonical	3	10	junction_1	7.03667484678724	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAATTAAATCCGTAAA	NA	False	NA	NA	False	AATAAA	-28	NA	65127455	65199205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_65127488_65137050_65137407_65153157_65153246_65163140_65163255_65163376_65163487_65166330_65166466_65172658_65172812_65178944_65179069_65185752_65185845_65187407_65187570_65188597_65188738_65191714_65191788_65196030_65196085_65197966
ENSMUSG00000029185.15_1	chr5	+	2522	11	ISM	ENSMUSG00000029185.15	ENSMUST00000031080.15	2938	14	23	9495	23	-9495	5prime_fragment	FALSE	canonical	3	10	junction_1	5.2687759489278	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAAATCATTAACTTT	NA	False	NA	NA	False	AATAGA	-11	NA	65127436	65189734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65127488_65137050_65137407_65153157_65153246_65163140_65163255_65163376_65163487_65166330_65166466_65172658_65172812_65178944_65179069_65185752_65185845_65187407_65187570_65188597
ENSMUSG00000029185.15_3	chr5	+	2656	13	ISM	ENSMUSG00000029185.15	ENSMUST00000031080.15	2938	14	9799	46	7445	-46	3prime_fragment	FALSE	canonical	3	13	junction_6	6.51227473485434	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACAATGTATTTGCAAC	1993	False	NA	NA	False	AATAAA	-6	NA	65137212	65199183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65137407_65153157_65153246_65163140_65163255_65163376_65163487_65166330_65166466_65172658_65172812_65178944_65179069_65185752_65185845_65187407_65187570_65188597_65188738_65191714_65191788_65196030_65196085_65197966
ENSMUSG00000029185.15_4	chr5	+	1096	1	ISM	ENSMUSG00000029185.15	ENSMUST00000031080.15	2938	14	70680	40	68326	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTTGCAACCTAGAA	NA	False	NA	NA	False	AATAAA	-12	NA	65198093	65199189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65198100_65199200
ENSMUSG00000029185.15_8	chr5	+	1886	6	ISM	ENSMUSG00000029185.15	ENSMUST00000031080.15	2938	14	58213	24	55859	-24	3prime_fragment	FALSE	canonical	3	20	junction_5	5.53534100123922	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAATTAAATCCGTAAA	NA	False	NA	NA	False	AATAAA	-28	NA	65185626	65199205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65185845_65187407_65187570_65188597_65188738_65191714_65191788_65196030_65196085_65197966
ENSMUSG00000029186.13_0	chr5	+	3119	10	FSM	ENSMUSG00000029186.13	ENSMUST00000031081.11	3139	10	18	2	-14	-2	multi-exon	FALSE	canonical	3	134	junction_2	14.8099065943487	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCCATTGTTCTGTGTA	NA	False	NA	5	True	AATAAA	-14	NA	52898933	52926680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_52899311_52905710_52905848_52907949_52908151_52908763_52908896_52910437_52910592_52911978_52912047_52914207_52914308_52918215_52918350_52919773_52919834_52924924
ENSMUSG00000029186.13_1	chr5	+	2982	9	NIC	ENSMUSG00000029186.13	novel	3139	10	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	45.8023948609677	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCCATTGTTCTGTGTA	NA	False	NA	5	True	AATAAA	-14	NA	52898933	52926680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_52899311_52907949_52908151_52908763_52908896_52910437_52910592_52911978_52912047_52914207_52914308_52918215_52918350_52919773_52919834_52924924
ENSMUSG00000029190.20_0	chr5	-	6696	9	FSM	ENSMUSG00000029190.20	ENSMUST00000031091.13	6677	9	-25	6	-1	-6	multi-exon	FALSE	canonical	2	71	junction_5	5.18260311040697	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATGTTTGTTGTTTTT	NA	False	NA	39	True	AATAAA	-7	NA	36853306	36757834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_36760148_36761854_36761953_36765281_36765391_36770589_36773879_36776086_36776169_36777007_36777075_36787000_36787136_36830091_36830587_36853198
ENSMUSG00000029190.20_1	chr5	-	3911	4	ISM	ENSMUSG00000029190.20	ENSMUST00000031091.13	6677	9	81300	7	-907	-7	3prime_fragment	FALSE	canonical	3	76	junction_2	0.816496580927726	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAAATGTTTGTTGTTTT	NA	False	NA	38	True	AATAAA	-6	NA	36771981	36757835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_36760148_36761854_36761953_36765281_36765391_36770589
ENSMUSG00000029190.20_2	chr5	-	6604	8	NIC	ENSMUSG00000029190.20	novel	6677	9	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	24.0882730381234	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATGTTTGTTGTTTTT	NA	False	NA	39	True	AATAAA	-7	NA	36853312	36757834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_36760148_36765281_36765391_36770589_36773879_36776086_36776169_36777007_36777075_36787000_36787136_36830091_36830587_36853198
ENSMUSG00000029190.20_20	chr5	-	1291	3	NNC	ENSMUSG00000029190.20	novel	2014	2	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	2	47	junction_1	14.5	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTATTTGTATTATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	36853312	36828745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_36829428_36830091_36830587_36853198
ENSMUSG00000029190.20_6	chr5	-	1504	1	ISM	ENSMUSG00000029190.20	ENSMUST00000031091.13	6677	9	93943	6	11736	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATGTTTGTTGTTTTT	8078	False	NA	39	True	AATAAA	-7	NA	36759338	36757834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_36757800_36759300
ENSMUSG00000029191.17_2	chr5	-	4722	25	FSM	ENSMUSG00000029191.17	ENSMUST00000204965.3	4751	25	26	3	-23	-3	multi-exon	FALSE	canonical	3	270	junction_12	80.615847887097	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGTACTGAGTCTTGCC	0	True	NA	-7	True	AATAAA	-16	NA	65492987	65419197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
ENSMUSG00000029191.17_4	chr5	-	4719	25	FSM	ENSMUSG00000029191.17	ENSMUST00000172732.8	4699	25	-23	3	-23	-3	multi-exon	FALSE	canonical	3	281	junction_12	79.0184138174275	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGTACTGAGTCTTGCC	0	True	NA	-7	True	AATAAA	-16	NA	65492987	65419197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
ENSMUSG00000029191.17_7	chr5	-	4721	25	NIC	ENSMUSG00000029191.17	novel	4699	25	NA	NA	-22	-3	combination_of_known_junctions	TRUE	canonical	3	185	junction_1	102.558519880115	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGTACTGAGTCTTGCC	1	True	NA	-7	True	AATAAA	-16	NA	65492986	65419197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_65420493_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
ENSMUSG00000029191.17_8	chr5	-	4724	25	FSM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	-26	-746	-23	-4	multi-exon	FALSE	canonical	3	185	junction_1	103.759328563213	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCGTACTGAGTCTTGC	0	True	NA	-8	True	AATAAA	-15	NA	65492987	65419198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_65420493_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
ENSMUSG00000029192.18_0	chr5	-	4575	14	FSM	ENSMUSG00000029192.18	ENSMUST00000031094.15	4590	14	9	6	2	-2	multi-exon	FALSE	canonical	3	20	junction_13	25.6258929704419	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTATGTTCACTGTGTAC	8934	False	NA	-6	True	AATAAA	-16	NA	36739732	36647953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36700520_36700642_36728639_36729382_36739698
ENSMUSG00000029192.18_13	chr5	-	4463	13	ISM	ENSMUSG00000029192.18	ENSMUST00000146430.8	4582	14	2362	10	-418	-6	3prime_fragment	FALSE	canonical	3	30	junction_12	21.379507322044	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTACTTATGTTCACTGT	NA	False	NA	-10	True	AATAAA	-12	NA	36729307	36647957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36700520_36700642_36728639
ENSMUSG00000029192.18_2	chr5	-	3808	12	FSM	ENSMUSG00000029192.18	ENSMUST00000171385.8	3884	12	72	4	-3	-1	multi-exon	FALSE	canonical	3	47	junction_11	14.7609043598508	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATGTTCACTGTGTACT	8856	False	NA	-5	True	AATAAA	-17	NA	36687895	36647952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36687766
ENSMUSG00000029192.18_21	chr5	-	2587	2	ISM	ENSMUSG00000029192.18	ENSMUST00000173757.2	838	3	12564	-2012	-1681	-1	3prime_fragment	FALSE	canonical	3	111	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATGTTCACTGTGTACT	NA	False	NA	-5	True	AATAAA	-17	NA	36652442	36647952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_36650459_36652361
ENSMUSG00000029192.18_4	chr5	-	2282	1	ISM	ENSMUSG00000029192.18	ENSMUST00000146430.8	4582	14	81435	5	527	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATGTTCACTGTGTACT	NA	False	NA	-5	True	AATAAA	-17	NA	36650234	36647952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_36648000_36650200
ENSMUSG00000029192.18_6	chr5	-	4677	14	FSM	ENSMUSG00000029192.18	ENSMUST00000140607.8	4649	14	-29	1	-18	-1	multi-exon	FALSE	canonical	3	13	junction_13	26.7829319490414	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATGTTCACTGTGTACT	9501	False	NA	-5	True	AATAAA	-17	NA	36739165	36647952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36700520_36700642_36728639_36729382_36739030
ENSMUSG00000029192.18_8	chr5	-	4899	16	NIC	ENSMUSG00000029192.18	novel	2765	15	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	2	8	junction_15	32.7743802382288	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATGTTCACTGTGTACT	NA	False	NA	-5	True	AATAAA	-17	NA	36750619	36647952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36700520_36700642_36728639_36729382_36742125_36742181_36749302_36749487_36750501
ENSMUSG00000029195.11_0	chr5	+	2658	4	ISM	ENSMUSG00000029195.11	ENSMUST00000031096.11	3540	5	23590	11	23496	-11	3prime_fragment	FALSE	canonical	3	98	junction_2	21.6024689946929	185	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGAAATTTTGTTGT	NA	False	NA	13	True	AAGAAA	-9	NA	65529246	65541339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65529804_65533022_65533292_65536270_65537415_65540651
ENSMUSG00000029195.11_1	chr5	+	2408	4	NIC	ENSMUSG00000029195.11	novel	3540	5	NA	NA	23496	-11	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	56.6058497173413	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGAAATTTTGTTGT	NA	False	NA	13	True	AAGAAA	-9	NA	65529246	65541339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_65529554_65533022_65533292_65536270_65537415_65540651
ENSMUSG00000029195.11_8	chr5	+	1390	2	ISM	ENSMUSG00000029195.11	ENSMUST00000031096.11	3540	5	31064	3	30970	-3	3prime_fragment	FALSE	canonical	3	148	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTGTTGTCTTAGACT	NA	False	NA	21	True	AAAAAG	-3	NA	65536720	65541347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65537415_65540651
ENSMUSG00000029196.10_0	chr5	-	3770	2	FSM	ENSMUSG00000029196.10	ENSMUST00000031097.8	3791	2	13	8	13	-8	multi-exon	FALSE	canonical	3	130	junction_1	0	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACAGAGTTGTGTCTGTT	NA	False	NA	NA	False	ATTAAA	-7	NA	36641616	36631021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_36634307_36641131
ENSMUSG00000029196.10_1	chr5	-	2568	1	ISM	ENSMUSG00000029196.10	ENSMUST00000031097.8	3791	2	8040	8	7867	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACAGAGTTGTGTCTGTT	NA	False	NA	NA	False	ATTAAA	-7	NA	36633589	36631021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_36631000_36633600
ENSMUSG00000029198.4_0	chr5	+	959	4	FSM	ENSMUSG00000029198.4	ENSMUST00000031099.4	3528	4	183	2386	183	-2386	multi-exon	FALSE	canonical	3	2567	junction_1	75.3126815350509	1098	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTATGCTGCACAGTCT	NA	False	NA	12	True	AATAAA	-13	NA	36622524	36629038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_36622600_36626781_36626945_36627945_36628028_36628399
ENSMUSG00000029199.12_0	chr5	+	1577	11	FSM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	59	32	-8	-32	multi-exon	FALSE	canonical	3	315	junction_10	33.1264244976726	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTTCTTTTCTTAAAA	6945	False	NA	16	True	TATAAA	-16	NA	65548898	65566518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
ENSMUSG00000029199.12_4	chr5	+	1449	11	FSM	ENSMUSG00000029199.12	ENSMUST00000031101.10	2996	11	21	1526	-3	-40	multi-exon	FALSE	canonical	3	30	junction_1	106.686643962588	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCATGTGAAATTTCTTT	6950	False	NA	8	True	TATAAA	-8	NA	65548903	65566510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_65549017_65549677_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
ENSMUSG00000029201.15_0	chr5	-	2329	12	FSM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	216	5	216	-2	multi-exon	FALSE	canonical	3	385	junction_10	43.2746370854342	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGATTCTTCAATTTAC	NA	False	NA	-18	True	AATAAA	-17	NA	65593076	65570568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65592966
ENSMUSG00000029201.15_5	chr5	-	2310	12	NIC	ENSMUSG00000029201.15	novel	2550	12	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_11	127.934900801053	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATTCTTCAATTTACGT	NA	False	NA	-16	True	AATAAA	-19	NA	65585745	65570566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65585656
ENSMUSG00000029202.13_1	chr5	-	1796	1	FSM	ENSMUSG00000029202.13	ENSMUST00000201673.2	6051	1	2199	2056	2199	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTAGAAGTGTGGAAACG	NA	False	NA	NA	False	AATAAA	-18	NA	65766917	65765121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_65765100_65766900
ENSMUSG00000029202.13_14	chr5	-	6881	33	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	-12	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	110.837996749479	191	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATTATGTAGAAGTGTGG	2734	False	NA	NA	False	AATAAA	-13	NA	65855523	65765126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_65767539_65772606_65772948_65776286_65776399_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65855092
ENSMUSG00000029202.13_3	chr5	-	6883	33	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	-24	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	110.837996749479	478	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATGCAGCATTATGTAGA	2722	False	NA	NA	False	AATAAA	-6	NA	65855535	65765133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_65767539_65772606_65772948_65776286_65776396_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65855092
ENSMUSG00000029202.13_6	chr5	-	6585	33	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	-8367	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	137.114228012404	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGCAGCATTATGTAGAA	NA	False	NA	NA	False	AATAAA	-7	NA	65863983	65765132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_65767539_65772606_65772948_65776286_65776396_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65863839
ENSMUSG00000029203.17_0	chr5	+	978	7	FSM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	67	3848	9	-5	multi-exon	FALSE	canonical	0	0	junction_2	503.727025944277	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGGGGAAATACTTTTA	NA	False	NA	15	True	AATAAA	-26	NA	65694642	65752483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029203.17_2	chr5	+	893	7	FSM	ENSMUSG00000029203.17	ENSMUST00000201292.4	1529	7	21	615	6	-5	multi-exon	FALSE	canonical	0	0	junction_2	633.60961079271	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGGGGAAATACTTTTA	NA	False	NA	15	True	AATAAA	-26	NA	65694639	65752483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_65694802_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029203.17_26	chr5	+	2704	1	ISM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	58992	60	4629	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTGAATTTTCCCCATTA	NA	False	NA	6	True	AATAAA	-14	NA	65753567	65756271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65753600_65756300
ENSMUSG00000029207.17_13	chr5	-	6471	16	NIC	ENSMUSG00000029207.17	novel	6632	16	NA	NA	-5	-7	combination_of_known_junctions	FALSE	canonical	3	27	junction_11	22.2297098496584	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCACCTTAGTAAT	NA	False	NA	-9	True	ATTAAA	-6	NA	66776036	66456077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557628_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
ENSMUSG00000029207.17_14	chr5	-	5787	16	FSM	ENSMUSG00000029207.17	ENSMUST00000162366.8	6540	16	87	666	0	-551	multi-exon	FALSE	canonical	3	21	junction_4	23.9298976178336	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTTGGTGATACAACT	NA	False	NA	NA	False	ATTAAA	-3	NA	66776014	66456733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468424_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
ENSMUSG00000029207.17_16	chr5	-	5876	17	FSM	ENSMUSG00000029207.17	ENSMUST00000160870.8	6526	17	-1	651	-1	-539	multi-exon	FALSE	canonical	0	0	junction_10	31.1528489868904	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAACTGTTGGCACTGCT	NA	False	NA	NA	False	ATTAAA	-15	NA	66776025	66456721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66549615_66549679_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
ENSMUSG00000029207.17_25	chr5	-	6188	15	NIC	ENSMUSG00000029207.17	novel	6333	16	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	27.9249175541874	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATCTTTGACTCCTTG	NA	False	NA	-76	True	AATAAA	-10	NA	66776023	66456188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66775910
ENSMUSG00000029207.17_27	chr5	-	4020	2	ISM	ENSMUSG00000029207.17	ENSMUST00000162955.8	4889	6	6149	32	6149	-7	3prime_fragment	FALSE	canonical	3	113	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCACCTTAGTAAT	NA	False	NA	-9	True	ATTAAA	-6	NA	66464922	66456077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_66460053_66464877
ENSMUSG00000029207.17_4	chr5	-	6315	16	NNC	ENSMUSG00000029207.17	novel	6333	16	NA	NA	23593	-6	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_15	19.4792196968975	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATCTTTGACTCCTTG	NA	False	NA	-76	True	AATAAA	-10	NA	66752390	66456188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66752306
ENSMUSG00000029207.17_5	chr5	-	2875	1	ISM	ENSMUSG00000029207.17	ENSMUST00000162955.8	4889	6	12106	45	12106	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTAAACCTTTAAAAAAA	NA	False	NA	-22	True	NA	NA	NA	66458965	66456090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_66456100_66459000
ENSMUSG00000029207.17_9	chr5	-	6358	16	FSM	ENSMUSG00000029207.17	ENSMUST00000159786.8	6333	16	-31	6	-6	-6	multi-exon	FALSE	canonical	3	66	junction_15	15.1314242555022	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATCTTTGACTCCTTG	NA	False	NA	-76	True	AATAAA	-10	NA	66776037	66456188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
ENSMUSG00000029208.17_0	chr5	+	3400	17	FSM	ENSMUSG00000029208.17	ENSMUST00000087228.11	3433	17	13	20	13	-20	multi-exon	FALSE	canonical	3	69	junction_8	27.9058125665604	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACATTACTCCAAGAAAAA	NA	False	NA	NA	False	AATAAA	-34	NA	69714316	69730427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69720425_69720566_69721866_69721991_69722772_69722906_69723703_69723848_69724470_69724605_69725738_69725841_69726571_69726692_69728103_69728141_69728926
ENSMUSG00000029208.17_4	chr5	+	3664	14	NIC	ENSMUSG00000029208.17	novel	3091	15	NA	NA	12	0	intron_retention	FALSE	canonical	3	43	junction_8	32.5779901741495	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGGTGTTCTCTGTTCCT	NA	False	NA	2	True	AATAAA	-13	NA	69714315	69729073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69721866_69721991_69722772_69722906_69723703_69725841_69726571_69726692_69728103_69728141_69728926
ENSMUSG00000029208.17_45	chr5	+	3270	4	FSM	ENSMUSG00000029208.17	ENSMUST00000125660.3	6321	4	707	2344	707	525	multi-exon	FALSE	canonical	3	151	junction_2	10.6144555520604	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCTGAGTTAAATACACT	NA	False	NA	NA	False	AATAAA	-19	NA	69724773	69730972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_69725841_69726571_69726692_69728103_69728141_69728926
ENSMUSG00000029208.17_48	chr5	+	2297	1	ISM	ENSMUSG00000029208.17	ENSMUST00000125660.3	6321	4	5621	1332	2154	-1332	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTATTGTTTTGACTGCG	NA	False	NA	1	True	ATTAAA	-16	NA	69729687	69731984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_69729700_69732000
ENSMUSG00000029208.17_6	chr5	+	3251	16	NIC	ENSMUSG00000029208.17	novel	3433	17	NA	NA	-4	-19	combination_of_known_junctions	FALSE	canonical	3	43	junction_8	33.0987747339518	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATTACTCCAAGAAAAAG	NA	False	NA	NA	False	AATAAA	-35	NA	69714326	69730428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69721866_69721991_69722772_69722906_69723703_69723848_69724470_69724605_69725738_69725841_69726571_69726692_69728103_69728141_69728926
ENSMUSG00000029208.17_7	chr5	+	3803	15	NIC	ENSMUSG00000029208.17	novel	3433	17	NA	NA	13	0	intron_retention	FALSE	canonical	3	69	junction_8	26.4487374799954	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGGTGTTCTCTGTTCCT	NA	False	NA	2	True	AATAAA	-13	NA	69714316	69729073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69720425_69720566_69721866_69721991_69722772_69722906_69723703_69725841_69726571_69726692_69728103_69728141_69728926
ENSMUSG00000029209.16_0	chr5	-	1308	3	ISM	ENSMUSG00000029209.16	ENSMUST00000166298.8	1755	7	11134	-162	11098	-7	3prime_fragment	TRUE	canonical	3	120	junction_2	10	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAATAATTATCTCATT	NA	False	NA	NA	False	AATAAA	-38	NA	69737037	69732350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_69733297_69735320_69735496_69736850
ENSMUSG00000029209.16_1	chr5	-	1836	7	FSM	ENSMUSG00000029209.16	ENSMUST00000031117.13	1894	7	49	9	-2	-9	multi-exon	FALSE	canonical	3	104	junction_4	11.5998084275369	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAATAAAATAATTATCTCA	NA	False	NA	NA	False	AATAAA	-36	NA	69749634	69732352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_69733297_69735320_69735496_69736850_69737036_69742316_69742500_69743807_69743910_69747003_69747167_69749550
ENSMUSG00000029209.16_5	chr5	-	1830	7	FSM	ENSMUSG00000029209.16	ENSMUST00000173927.8	1011	7	-17	-802	-2	-9	multi-exon	FALSE	canonical	3	26	junction_3	36.2142544065486	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAATAAAATAATTATCTCA	NA	False	NA	NA	False	AATAAA	-36	NA	69749634	69732352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_69733297_69735320_69735496_69736850_69737030_69742316_69742500_69743807_69743910_69747003_69747167_69749550
ENSMUSG00000029213.12_0	chr5	-	1428	5	FSM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	26	2441	1	-5	multi-exon	FALSE	canonical	3	313	junction_3	25.4889682019496	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTTCCTGTGTTGCTTG	NA	False	NA	-9	True	AATACA	-9	NA	72325506	72316358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
ENSMUSG00000029213.12_11	chr5	-	2264	2	FSM	ENSMUSG00000029213.12	ENSMUST00000198951.2	1114	2	-1148	-2	-1148	2	multi-exon	FALSE	canonical	3	379	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTGCTTGATTTCAG	NA	False	NA	-2	True	AATACA	-16	NA	72319629	72316351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_72317237_72318250
ENSMUSG00000029213.12_7	chr5	-	1522	5	NNC	ENSMUSG00000029213.12	novel	3895	5	NA	NA	21	1	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_4	141.390416931276	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTGTTGCTTGATTTCA	NA	False	NA	-3	True	AATACA	-15	NA	72325478	72316352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325305
ENSMUSG00000029217.17_4	chr5	-	2632	19	FSM	ENSMUSG00000029217.17	ENSMUST00000071944.13	2659	19	3	24	2	-2	multi-exon	FALSE	canonical	1	2	junction_5	3.16471674858358	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATACGTTTATCTCTTTA	NA	False	NA	NA	False	NA	NA	NA	73025784	72913082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_72913723_72914705_72914864_72914946_72915066_72917685_72917751_72920906_72921124_72921466_72921639_72922854_72922930_72926047_72926182_72928489_72928570_72931173_72931229_72936763_72936830_72939345_72939519_72941060_72941102_72943259_72943389_72944080_72944163_72946482_72946588_72980798_72980985_72982386_72982474_73025736
ENSMUSG00000029221.16_0	chr5	+	2844	16	NIC	ENSMUSG00000029221.16	novel	5711	18	NA	NA	0	-9	combination_of_known_splicesites	FALSE	canonical	2	11	junction_9	109.607096282839	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGATTTGTTACGGTAG	395	False	NA	6	True	AATAAA	-9	NA	67464306	67513120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_67464541_67473020_67473189_67482016_67482077_67484195_67484296_67485040_67485134_67485784_67485868_67487235_67487295_67490396_67490465_67491908_67492012_67501872_67501913_67502968_67503041_67503468_67503577_67505262_67505429_67507124_67507255_67509994_67510109_67511874
ENSMUSG00000029221.16_1	chr5	+	3036	18	FSM	ENSMUSG00000029221.16	ENSMUST00000162372.8	5711	18	10	2665	0	-8	multi-exon	FALSE	canonical	3	203	junction_11	79.5528159088737	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGATTTGTTACGGTAGT	396	False	NA	7	True	AATAAA	-10	NA	67464307	67513121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_67464541_67473020_67473189_67482016_67482077_67484195_67484296_67485040_67485134_67485784_67485868_67487235_67487295_67490396_67490465_67491908_67492012_67497293_67497350_67499436_67499573_67501872_67501913_67502968_67503041_67503468_67503577_67505262_67505429_67507124_67507255_67509994_67510109_67511874
ENSMUSG00000029221.16_46	chr5	+	594	1	ISM	ENSMUSG00000029221.16	ENSMUST00000113676.6	5648	17	48230	2662	23086	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGATTTGTTACGGTAGT	NA	False	NA	7	True	AATAAA	-10	NA	67512527	67513121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_67512500_67513100
ENSMUSG00000029223.13_0	chr5	+	1021	9	FSM	ENSMUSG00000029223.13	ENSMUST00000031131.11	1177	9	151	5	0	0	multi-exon	FALSE	canonical	3	449	junction_4	35.1227757302865	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	False	NA	28	True	AATAAA	-17	NA	66833584	66844572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_66833666_66833778_66833791_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUSG00000029223.13_11	chr5	+	987	7	FSM	ENSMUSG00000029223.13	ENSMUST00000176015.5	980	7	-6	-1	-6	1	multi-exon	FALSE	canonical	3	449	junction_2	35.4479273802511	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGCTGGTTTTTATTTTC	NA	False	NA	29	True	AATAAA	-18	NA	66834228	66844573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUSG00000029223.13_3	chr5	+	1519	8	NIC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	-1	1	intron_retention	FALSE	canonical	3	449	junction_3	34.4211610282194	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGCTGGTTTTTATTTTC	NA	False	NA	29	True	AATAAA	-18	NA	66833583	66844573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_66833666_66833778_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUSG00000029223.13_6	chr5	+	1005	8	NIC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	0	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	178.588113506231	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTATCAGCTGGTTTTTA	NA	False	NA	24	True	AATAAA	-13	NA	66833584	66844568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_66833666_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUSG00000029227.16_0	chr5	+	1958	16	FSM	ENSMUSG00000029227.16	ENSMUST00000113535.9	1969	16	14	-3	-8	3	multi-exon	FALSE	canonical	3	220	junction_11	150.805393360671	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTTTGTCTTGTAAT	NA	False	NA	25	True	AATAAA	-26	NA	74696155	74756809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_1	chr5	+	1985	17	FSM	ENSMUSG00000029227.16	ENSMUST00000080164.12	4673	17	46	2642	-8	3	multi-exon	FALSE	canonical	3	373	junction_9	134.520909155417	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTTTGTCTTGTAAT	NA	False	NA	25	True	AATAAA	-26	NA	74696155	74756809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_2	chr5	+	2135	18	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	-8	3	combination_of_known_junctions	TRUE	canonical	3	110	junction_9	229.420784136424	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTTTGTCTTGTAAT	NA	False	NA	25	True	AATAAA	-26	NA	74696155	74756809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_3	chr5	+	2093	18	FSM	ENSMUSG00000029227.16	ENSMUST00000113536.8	4769	18	24	2652	-8	3	multi-exon	FALSE	canonical	3	259	junction_9	161.909389842069	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTTTGTCTTGTAAT	NA	False	NA	25	True	AATAAA	-26	NA	74696155	74756809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_4	chr5	+	2051	18	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	-6	2	combination_of_known_junctions	FALSE	canonical	3	110	junction_9	206.218767164378	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGCTTTGTCTTGTAA	NA	False	NA	24	True	AATAAA	-25	NA	74696157	74756808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_5	chr5	+	2154	19	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	3	110	junction_9	215.964760499897	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAAAGCTTTGTCTTGTA	NA	False	NA	23	True	AATAAA	-24	NA	74696161	74756807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_7	chr5	+	2063	17	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	-5	3	combination_of_known_junctions	FALSE	canonical	3	220	junction_12	176.742209428733	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTTTGTCTTGTAAT	NA	False	NA	25	True	AATAAA	-26	NA	74696158	74756809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029228.16_0	chr5	-	2542	11	FSM	ENSMUSG00000029228.16	ENSMUST00000117388.8	2564	11	20	2	20	-2	multi-exon	FALSE	canonical	3	14	junction_9	3.95474398665704	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGTGTAGAGGATTTC	NA	False	NA	-1	True	AATAAA	-17	NA	74863553	74757766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_74758072_74758436_74758596_74766697_74766924_74768397_74768567_74771337_74771473_74780634_74781007_74784142_74784346_74788008_74788162_74788780_74789023_74846056_74846534_74863452
ENSMUSG00000029229.9_0	chr5	-	1092	6	FSM	ENSMUSG00000029229.9	ENSMUST00000075452.7	9699	6	171	8436	171	4756	multi-exon	FALSE	canonical	3	625	junction_4	34.4290574950869	355	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGGGCAGCCTTTGTT	NA	False	NA	74	True	AATACA	-15	NA	75205264	75167084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_75167425_75171891_75171952_75172113_75172171_75187728_75187885_75188021_75188077_75204840
ENSMUSG00000029231.16_0	chr5	+	4473	23	FSM	ENSMUSG00000029231.16	ENSMUST00000168162.5	6834	23	12	2349	12	-2349	multi-exon	FALSE	canonical	0	0	junction_13	1.08330684434663	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGACAAGTTTGGCAGT	NA	False	NA	NA	False	ATTAAA	-18	NA	75316571	75356513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_75317011_75322891_75322953_75324195_75324514_75327171_75327433_75328497_75328629_75331155_75331328_75331422_75331613_75334049_75334166_75335605_75335733_75337327_75337522_75338305_75338401_75338590_75338724_75340828_75340934_75341659_75341771_75342182_75342337_75343636_75343804_75346174_75346291_75346611_75346735_75348523_75348636_75349680_75349781_75349891_75349998_75353091_75353334_75355613
ENSMUSG00000029231.16_4	chr5	+	3458	1	NIC	ENSMUSG00000029231.16	novel	6549	23	NA	NA	32902	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATGACTTAACGTTATG	NA	False	NA	NA	False	AATAAA	-10	NA	75355396	75358854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_75355400_75358900
ENSMUSG00000029233.16_0	chr5	+	1701	6	FSM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	34	12	-1	-12	multi-exon	FALSE	canonical	3	49	junction_4	4.14728827066554	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCATACAGCACGCCCTGG	NA	False	NA	3	True	AATAAA	-15	NA	76288151	76303314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
ENSMUSG00000029233.16_3	chr5	+	1780	6	NIC	ENSMUSG00000029233.16	novel	628	4	NA	NA	-39	-12	combination_of_known_junctions	FALSE	canonical	3	3	junction_1	20.4019606900906	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCATACAGCACGCCCTGG	NA	False	NA	3	True	AATAAA	-15	NA	76288507	76303314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_76288831_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
ENSMUSG00000029233.16_6	chr5	+	1446	5	ISM	ENSMUSG00000029233.16	ENSMUST00000113507.8	1358	6	1064	-227	-260	-8	3prime_fragment	FALSE	canonical	3	49	junction_3	3.20156211871642	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGCACGCCCTGGACTG	NA	False	NA	7	True	AATAAA	-19	NA	76295547	76303318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
ENSMUSG00000029233.16_9	chr5	+	611	1	ISM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	14343	255	1845	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAACAGGAAACTCTG	NA	False	NA	NA	False	AATAAA	-12	NA	76302460	76303071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_76302500_76303100
ENSMUSG00000029234.14_0	chr5	+	1841	6	FSM	ENSMUSG00000029234.14	ENSMUST00000031144.14	1897	6	52	4	-18	-4	multi-exon	FALSE	canonical	3	1062	junction_3	75.4808585006821	1260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTACTCGTTTTCCTCGTGT	588	False	NA	3	True	AATAAA	-11	NA	76331778	76357088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_76332200_76347191_76347418_76351953_76352130_76352483_76352664_76355648_76355755_76356356
ENSMUSG00000029235.15_1	chr5	-	1124	6	FSM	ENSMUSG00000029235.15	ENSMUST00000031145.7	1181	6	36	21	13	-21	multi-exon	FALSE	canonical	3	53	junction_1	18.0554700852678	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAAATTAAGACATT	NA	False	NA	NA	False	AATAAA	-10	NA	76478967	76459994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_76460446_76465647_76465857_76466973_76467118_76472152_76472244_76472839_76472961_76478859
ENSMUSG00000029235.15_2	chr5	-	749	4	NIC	ENSMUSG00000029235.15	novel	1181	6	NA	NA	37	-19	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	45.5192267069642	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAATTAAGACATTTT	NA	False	NA	NA	False	AATAAA	-12	NA	76478943	76459992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_76460446_76472152_76472244_76472839_76472961_76478859
ENSMUSG00000029235.15_5	chr5	-	917	5	NIC	ENSMUSG00000029235.15	novel	1181	6	NA	NA	13	-19	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	37.1483512420134	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAATTAAGACATTTT	NA	False	NA	NA	False	AATAAA	-12	NA	76478967	76459992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_76460446_76466973_76467118_76472152_76472244_76472839_76472961_76478859
ENSMUSG00000029238.12_0	chr5	-	2355	1	ISM	ENSMUSG00000029238.12	ENSMUST00000202651.4	9744	23	90257	2313	59477	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTTTGCATATTTTTTC	1407	False	NA	-1	True	ATTAAA	-19	NA	76362382	76360027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_76360000_76362400
ENSMUSG00000029238.12_10	chr5	-	7408	23	NIC	ENSMUSG00000029238.12	novel	9744	23	NA	NA	-2	-6	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	11.4989219760624	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGTTTTGCATATTTTT	NA	False	NA	-3	True	ATTAAA	-17	NA	76452621	76360029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_76364726_76374779_76375075_76377204_76377408_76378011_76378207_76379242_76379396_76383612_76383703_76384128_76384230_76384867_76385010_76388717_76388794_76389716_76389865_76390628_76390736_76390925_76391009_76393042_76393162_76393268_76393383_76396188_76396310_76402220_76402311_76410521_76410614_76413637_76413787_76414203_76414264_76414646_76414737_76421805_76421891_76451270_76451350_76452501
ENSMUSG00000029238.12_19	chr5	-	3024	18	ISM	ENSMUSG00000029238.12	ENSMUST00000202651.4	9744	23	15	24743	-5	506	5prime_fragment	FALSE	canonical	3	23	junction_17	9.94135050317559	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTCTCTGCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	76452624	76382457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_76383703_76384128_76384230_76384867_76385010_76388717_76388794_76389716_76389865_76390628_76390736_76390925_76391009_76393042_76393162_76393268_76393383_76396188_76396310_76402220_76402311_76410521_76410614_76413637_76413787_76414203_76414264_76414646_76414737_76421805_76421891_76451270_76451350_76452501
ENSMUSG00000029238.12_2	chr5	-	7420	23	FSM	ENSMUSG00000029238.12	ENSMUST00000075159.5	7478	23	52	6	52	-6	multi-exon	FALSE	canonical	3	18	junction_22	10.9767786450073	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGTTTTGCATATTTTT	NA	False	NA	-3	True	ATTAAA	-17	NA	76452343	76360029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_76364726_76374779_76375075_76377204_76377411_76378011_76378207_76379242_76379396_76383612_76383703_76384128_76384230_76384867_76385010_76388717_76388794_76389716_76389865_76390628_76390736_76390925_76391009_76393042_76393162_76393268_76393383_76396188_76396310_76402220_76402311_76410521_76410614_76413637_76413787_76414203_76414264_76414646_76414737_76421805_76421891_76451270_76451350_76452214
ENSMUSG00000029238.12_24	chr5	-	7643	22	NIC	ENSMUSG00000029238.12	novel	7478	23	NA	NA	76	331	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	14.2370600037726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGTGTAGTTGGTGAT	NA	False	NA	NA	False	AATAAA	-22	NA	76452319	76359692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_76364726_76374779_76375075_76377204_76377411_76378011_76378207_76379242_76379396_76384128_76384230_76384867_76385010_76388717_76388794_76389716_76389865_76390628_76390736_76390925_76391009_76393042_76393162_76393268_76393383_76396188_76396310_76402220_76402311_76410521_76410614_76413637_76413787_76414203_76414264_76414646_76414737_76421805_76421891_76451270_76451350_76452214
ENSMUSG00000029238.12_4	chr5	-	7444	23	NIC	ENSMUSG00000029238.12	novel	7478	23	NA	NA	25	-6	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	11.9323160069308	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGTTTTGCATATTTTT	NA	False	NA	-3	True	ATTAAA	-17	NA	76452370	76360029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_76364726_76374779_76375075_76377204_76377408_76378011_76378207_76379242_76379396_76383612_76383703_76384128_76384230_76384867_76385010_76388717_76388794_76389716_76389865_76390628_76390736_76390925_76391009_76393042_76393162_76393268_76393383_76396188_76396310_76402220_76402311_76410521_76410614_76413637_76413787_76414203_76414264_76414646_76414737_76421805_76421891_76451270_76451350_76452214
ENSMUSG00000029238.12_7	chr5	-	5272	4	ISM	ENSMUSG00000029238.12	ENSMUST00000075159.5	7478	23	74312	3	43776	-3	3prime_fragment	FALSE	canonical	3	31	junction_3	12.9614813968157	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTGCATATTTTTTCC	NA	False	NA	0	True	ATTAAA	-20	NA	76378083	76360026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_76364726_76374779_76375075_76377204_76377411_76378011
ENSMUSG00000029238.12_8	chr5	-	7371	23	FSM	ENSMUSG00000029238.12	ENSMUST00000202651.4	9744	23	58	2315	20	-6	multi-exon	FALSE	canonical	3	23	junction_22	10.4912399506674	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGTTTTGCATATTTTT	NA	False	NA	-3	True	ATTAAA	-17	NA	76452581	76360029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_76364726_76374779_76375075_76377204_76377411_76378011_76378207_76379242_76379396_76383612_76383703_76384128_76384230_76384867_76385010_76388717_76388794_76389716_76389865_76390628_76390736_76390925_76391009_76393042_76393162_76393268_76393383_76396188_76396310_76402220_76402311_76410521_76410614_76413637_76413787_76414203_76414264_76414646_76414737_76421805_76421891_76451270_76451350_76452501
ENSMUSG00000029246.15_0	chr5	-	3431	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	373	177	-40	-177	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	1106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTTTCAAGCCTTGTTT	NA	False	NA	84	True	ATTAAA	-20	NA	77099052	77061299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
ENSMUSG00000029246.15_6	chr5	-	1579	1	ISM	ENSMUSG00000029246.15	ENSMUST00000155272.8	4158	12	36661	84	36254	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTGCATCTGATTT	NA	False	NA	-8	True	TATAAA	-14	NA	77062758	77061179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_77061200_77062800
ENSMUSG00000029247.18_1	chr5	+	2032	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	445	5	-25	-5	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	3245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATATATTCTCGCTGTG	731	False	NA	10	True	ATTAAA	-13	NA	77099598	77115347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUSG00000029247.18_2	chr5	+	2097	10	FSM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	-48	-187	13	-5	multi-exon	FALSE	canonical	3	185	junction_1	1007.72571224074	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATATATTCTCGCTGTG	299	False	NA	10	True	ATTAAA	-13	NA	77099166	77115347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUSG00000029247.18_3	chr5	+	2072	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	264	9	-165	-5	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATATATTCTCGCTGTG	591	False	NA	10	True	ATTAAA	-13	NA	77099458	77115347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUSG00000029249.16_3	chr5	+	7018	4	FSM	ENSMUSG00000029249.16	ENSMUST00000080359.12	7004	4	-22	8	-22	-8	multi-exon	FALSE	canonical	3	740	junction_1	62.4731053245226	1192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTATCGGACCTTTGT	3674	False	NA	6	True	AATAAA	-6	NA	77413315	77434271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_77413636_77415778_77416671_77423080_77423165_77428549
ENSMUSG00000029249.16_31	chr5	+	6238	3	ISM	ENSMUSG00000029249.16	ENSMUST00000113449.2	6924	4	2196	8	2196	-8	3prime_fragment	FALSE	canonical	3	814	junction_1	39.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTATCGGACCTTTGT	6597	False	NA	6	True	AATAAA	-6	NA	77416238	77434271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_77416671_77423080_77423165_77428549
ENSMUSG00000029249.16_34	chr5	+	3709	1	ISM	ENSMUSG00000029249.16	ENSMUST00000080359.12	7004	4	17225	8	16520	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	543	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTATCGGACCTTTGT	NA	False	NA	6	True	AATAAA	-6	NA	77430562	77434271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_77430600_77434300
ENSMUSG00000029249.16_9	chr5	+	6933	4	FSM	ENSMUSG00000029249.16	ENSMUST00000113449.2	6924	4	-17	8	-17	-8	multi-exon	FALSE	canonical	3	119	junction_1	347.74543690592	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTATCGGACCTTTGT	4384	False	NA	6	True	AATAAA	-6	NA	77414025	77434271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_77414261_77415778_77416671_77423080_77423165_77428549
ENSMUSG00000029250.6_0	chr5	+	3779	25	FSM	ENSMUSG00000029250.6	ENSMUST00000031167.6	4145	25	362	4	18	-4	multi-exon	TRUE	canonical	3	372	junction_9	39.992360381564	980	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTGATGTGTTATCTTT	NA	False	NA	12	True	AATAAA	-12	NA	77458355	77497167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_77458478_77460997_77461071_77463696_77463848_77467810_77467924_77468057_77468278_77468801_77468961_77471400_77471566_77473585_77473783_77473894_77474015_77474381_77474569_77478979_77479124_77479796_77479937_77480033_77480146_77482263_77482419_77483480_77483680_77484273_77484443_77487167_77487265_77488221_77488317_77490376_77490628_77490707_77490798_77491016_77491125_77492638_77492753_77493097_77493259_77496069_77496266_77496926
ENSMUSG00000029253.13_0	chr5	-	3135	19	FSM	ENSMUSG00000029253.13	ENSMUST00000031170.10	3192	19	45	12	9	-12	multi-exon	FALSE	canonical	3	99	junction_10	17.8879399334224	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACACAAAGTGGCATC	NA	False	NA	-18	True	ATTAAA	-5	NA	86213397	86159894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
ENSMUSG00000029253.13_20	chr5	-	2003	12	ISM	ENSMUSG00000029253.13	ENSMUST00000031170.10	3192	19	27865	19	27804	-19	3prime_fragment	FALSE	canonical	3	99	junction_10	20.09563909767	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTAAAAAACACAAAG	NA	False	NA	-25	True	NA	NA	NA	86185577	86159901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170
ENSMUSG00000029253.13_7	chr5	-	2961	18	NIC	ENSMUSG00000029253.13	novel	3192	19	NA	NA	9	-12	combination_of_known_splicesites	FALSE	canonical	2	3	junction_10	34.9586013196806	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACACAAAGTGGCATC	NA	False	NA	-18	True	ATTAAA	-5	NA	86213397	86159894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
ENSMUSG00000029263.16_0	chr5	+	4358	13	FSM	ENSMUSG00000029263.16	ENSMUST00000119014.8	4573	13	209	6	182	-6	multi-exon	TRUE	canonical	3	51	junction_6	9.64761052742537	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACATTAACTTTTGTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	108460683	108497215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_108460945_108461824_108462031_108465128_108465339_108466690_108466880_108467761_108467904_108474682_108474896_108479840_108480059_108480549_108480832_108483969_108484428_108486420_108486613_108489660_108489971_108492089_108492254_108495702
ENSMUSG00000029263.16_2	chr5	+	2991	11	ISM	ENSMUSG00000029263.16	ENSMUST00000119014.8	4573	13	205	6945	178	-5823	5prime_fragment	FALSE	canonical	3	51	junction_6	9.76165969494942	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	108460679	108490276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_108460945_108461824_108462031_108465128_108465339_108466690_108466880_108467761_108467904_108474682_108474896_108479840_108480059_108480549_108480832_108483969_108484428_108486420_108486613_108489660
ENSMUSG00000029265.5_0	chr5	+	3058	3	FSM	ENSMUSG00000029265.5	ENSMUST00000031190.5	3085	3	22	5	22	-5	multi-exon	FALSE	canonical	3	201	junction_1	9	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTGTTTTTATATTTA	NA	False	NA	NA	False	AATAAA	-16	NA	108416784	108428387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_108417676_108423434_108423599_108426384
ENSMUSG00000029265.5_2	chr5	+	1597	1	ISM	ENSMUSG00000029265.5	ENSMUST00000031190.5	3085	3	10028	5	2005	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTGTTTTTATATTTA	NA	False	NA	NA	False	AATAAA	-16	NA	108426790	108428387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_108426800_108428400
ENSMUSG00000029267.18_16	chr5	+	4102	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4932	-4	intron_retention	FALSE	canonical	0	0	junction_4	626.478354685051	230	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGCTAATGAGTTTTT	NA	False	NA	29	True	ATTAAA	-30	NA	108208607	108256866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000029267.18_176	chr5	+	4079	15	FSM	ENSMUSG00000029267.18	ENSMUST00000081567.11	4060	15	-24	5	1	-5	multi-exon	FALSE	canonical	0	0	junction_3	595.009556603068	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAGCTAATGAGTTTT	NA	False	NA	28	True	ATTAAA	-29	NA	108213583	108256865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000029267.18_274	chr5	+	1832	1	ISM	ENSMUSG00000029267.18	ENSMUST00000081567.11	4060	15	41427	4	15064	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGCTAATGAGTTTTT	NA	False	NA	29	True	ATTAAA	-30	NA	108255034	108256866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_108255000_108256900
ENSMUSG00000029267.18_3	chr5	+	3954	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4932	-4	intron_retention	FALSE	canonical	0	0	junction_3	488.414344003707	1246	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGCTAATGAGTTTTT	NA	False	NA	29	True	ATTAAA	-30	NA	108208607	108256866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000029270.11_0	chr5	-	1762	5	FSM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	42	917	-10	733	multi-exon	FALSE	canonical	3	143	junction_2	18.0883249639097	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATAGCATGATTTACTGT	NA	False	NA	NA	False	ATTAAA	-11	NA	108134909	108056835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_108058083_108059477_108059655_108062211_108062320_108072450_108072586_108134814
ENSMUSG00000029270.11_1	chr5	-	935	1	ISM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	77186	912	63099	738	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATGATTTACTGTGTACT	8453	False	NA	NA	False	ATTAAA	-16	NA	108057765	108056830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_108056800_108057800
ENSMUSG00000029276.14_0	chr5	-	1930	19	FSM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	30	55	30	0	multi-exon	FALSE	canonical	3	217	junction_15	25.8010551033179	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCATTATACTTTATAC	NA	False	NA	NA	False	AATAAA	-17	NA	107745475	107696887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
ENSMUSG00000029276.14_1	chr5	-	1856	18	ISM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	776	64	681	-7	3prime_fragment	FALSE	canonical	3	217	junction_15	26.2778604828683	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCTGTTTTTCATTAT	NA	False	NA	NA	False	AATAAA	-8	NA	107744729	107696896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653
ENSMUSG00000029276.14_15	chr5	-	2077	19	NIC	ENSMUSG00000029276.14	novel	2015	19	NA	NA	40	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_18	63.7616123531749	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCATTATACTTTATAC	NA	False	NA	NA	False	AATAAA	-17	NA	107745370	107696887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745157
ENSMUSG00000029276.14_3	chr5	-	1958	19	NIC	ENSMUSG00000029276.14	novel	2015	19	NA	NA	-30	6	combination_of_known_junctions	FALSE	canonical	3	41	junction_15	56.5136550744733	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATACTTTATACCACCAT	NA	False	NA	NA	False	AATAAA	-23	NA	107745473	107696881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745409
ENSMUSG00000029279.16_0	chr5	+	1589	7	FSM	ENSMUSG00000029279.16	ENSMUST00000112677.10	1607	7	19	-1	2	1	multi-exon	FALSE	canonical	2	3	junction_2	0.74535599249993	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAACTTTGTGTTTGCCC	NA	False	NA	NA	False	AGTAAA	-16	NA	107479059	107498608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_107479174_107489165_107489308_107489885_107490126_107491418_107491557_107493001_107493117_107496331_107496505_107497941
ENSMUSG00000029283.18_0	chr5	+	2817	11	FSM	ENSMUSG00000029283.18	ENSMUST00000117196.9	2864	11	47	0	-12	0	multi-exon	FALSE	canonical	3	29	junction_7	74.2377262582846	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112234	107132297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107123350_107123527_107124495_107124579_107127160_107127311_107130829
ENSMUSG00000029283.18_1	chr5	+	2913	12	FSM	ENSMUSG00000029283.18	ENSMUST00000031221.12	2961	12	47	1	-12	0	multi-exon	FALSE	canonical	3	169	junction_8	37.8828119074671	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112234	107132297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
ENSMUSG00000029283.18_27	chr5	+	3126	12	FSM	ENSMUSG00000029283.18	ENSMUST00000118261.8	3129	12	3	0	3	0	multi-exon	FALSE	canonical	3	16	junction_1	77.2190187680738	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112429	107132297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_107112700_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
ENSMUSG00000029283.18_47	chr5	+	327	1	ISM	ENSMUSG00000029283.18	ENSMUST00000117196.9	2864	11	19783	0	8867	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107131970	107132297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_107132000_107132300
ENSMUSG00000029283.18_6	chr5	+	4281	10	NIC	ENSMUSG00000029283.18	novel	2864	11	NA	NA	-12	0	intron_retention	FALSE	canonical	3	232	junction_7	20.9290394275042	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112234	107132297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107123527_107124495_107124579_107127160_107127311_107130829
ENSMUSG00000029283.18_9	chr5	+	2890	12	NIC	ENSMUSG00000029283.18	novel	2961	12	NA	NA	-12	-2	combination_of_known_junctions	FALSE	canonical	3	21	junction_10	76.50290331011	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATATCAGAATACTTATTT	NA	False	NA	7	True	AATAAA	-12	NA	107112234	107132295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127181_107127311_107130829
ENSMUSG00000029287.15_0	chr5	-	6044	17	FSM	ENSMUSG00000029287.15	ENSMUST00000031224.15	6087	17	38	5	4	-5	multi-exon	FALSE	canonical	3	17	junction_8	3.80788655293195	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATTTATGTCATATCTG	315	False	NA	-10	True	AATAAA	-15	NA	107437457	107254440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_107257624_107266284_107266393_107269225_107269274_107278326_107278445_107280598_107280896_107284784_107284944_107285395_107285537_107287634_107287788_107288249_107288579_107290222_107290413_107295891_107296040_107297655_107297825_107302117_107302302_107325670_107325809_107362758_107362944_107414059_107414217_107437120
ENSMUSG00000029287.15_1	chr5	-	2316	1	ISM	ENSMUSG00000029287.15	ENSMUST00000031224.15	6087	17	180739	5	24033	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATTTATGTCATATCTG	NA	False	NA	-10	True	AATAAA	-15	NA	107256756	107254440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_107254400_107256800
ENSMUSG00000029287.15_7	chr5	-	3873	6	ISM	ENSMUSG00000029287.15	ENSMUST00000138469.8	2849	15	55338	-2714	-4106	3	3prime_fragment	FALSE	canonical	3	18	junction_2	4.69041575982343	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCATATCTGGTCATCAC	4704	False	NA	-2	True	AATAAA	-23	NA	107284895	107254432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_107257624_107266284_107266393_107269225_107269274_107278326_107278445_107280598_107280896_107284784
ENSMUSG00000029290.13_0	chr5	+	2669	12	FSM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	-12	10	-9	-10	multi-exon	TRUE	canonical	3	25	junction_1	8.12708968677346	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAATAATTTGTGTTCT	NA	False	NA	NA	False	AATACA	-6	NA	106024421	106063674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
ENSMUSG00000029290.13_11	chr5	+	2119	9	ISM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	9782	303	-4594	-303	3prime_fragment	FALSE	canonical	3	27	junction_1	7.67707626639204	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGAACTTTTTCCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	106034215	106063381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_106034295_106036299_106036706_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
ENSMUSG00000029290.13_12	chr5	+	2155	8	ISM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	12043	11	-2333	-11	3prime_fragment	FALSE	canonical	3	32	junction_7	6.8332918532008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACAAATAATTTGTGTTC	NA	False	NA	NA	False	AATACA	-5	NA	106036476	106063673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_106036706_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
ENSMUSG00000029290.13_14	chr5	+	3080	7	ISM	ENSMUSG00000029290.13	ENSMUST00000138615.8	1554	10	12715	43	-1653	-43	3prime_fragment	FALSE	canonical	3	32	junction_6	6.73300329224139	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAATGTTTGGCACTTGT	NA	False	NA	9	True	ATTAAA	-18	NA	106037156	106063000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
ENSMUSG00000029290.13_15	chr5	+	3992	2	NIC	ENSMUSG00000029290.13	novel	1554	10	NA	NA	3748	-6	intron_retention	FALSE	canonical	3	32	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAATTTGTGTTCTTTTG	NA	False	NA	NA	False	AATACA	-10	NA	106056527	106063678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_106059375_106062533
ENSMUSG00000029290.13_16	chr5	+	906	1	ISM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	38334	11	9988	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACAAATAATTTGTGTTC	NA	False	NA	NA	False	AATACA	-5	NA	106062767	106063673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_106062800_106063700
ENSMUSG00000029290.13_25	chr5	+	1560	5	ISM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	29403	10	1057	-10	3prime_fragment	FALSE	canonical	3	32	junction_4	6.17960354715414	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAATAATTTGTGTTCT	NA	False	NA	NA	False	AATACA	-6	NA	106053836	106063674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
ENSMUSG00000029290.13_8	chr5	+	5075	9	NIC	ENSMUSG00000029290.13	novel	1554	10	NA	NA	2	-158	intron_retention	FALSE	canonical	2	3	junction_3	13.2328898960129	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCATATTTTTAAAAAGTG	NA	False	NA	NA	False	ATTAAA	-13	NA	106024435	106063526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_106024565_106026614_106026660_106034052_106034143_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106058168_106059278_106059375_106062533
ENSMUSG00000029291.12_1	chr5	+	3553	18	FSM	ENSMUSG00000029291.12	ENSMUST00000198965.5	3536	18	-22	5	-22	-5	multi-exon	FALSE	canonical	3	79	junction_11	15.8934601684016	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAACCTATTGTGTTGGTT	NA	False	NA	6	True	AATAAA	-10	NA	88712876	88799246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_88713336_88762799_88762974_88764320_88764439_88765193_88765296_88769159_88769284_88775079_88775142_88775883_88775950_88778395_88778466_88780297_88780391_88783050_88783135_88785050_88785219_88786839_88786938_88790787_88790908_88791926_88792024_88793395_88793461_88795077_88795106_88796114_88796184_88797690
ENSMUSG00000029291.12_8	chr5	+	1300	7	ISM	ENSMUSG00000029291.12	ENSMUST00000196894.5	3703	13	-17	14405	-17	10613	5prime_fragment	FALSE	canonical	3	106	junction_1	12.4454364683963	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGATTACAGAACATATGA	NA	False	NA	NA	False	ATTAAA	-15	NA	88712881	88776149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_88713336_88762799_88762974_88764320_88764439_88765193_88765296_88769159_88769284_88775079_88775142_88775883
ENSMUSG00000029298.16_3	chr5	-	3840	2	ISM	ENSMUSG00000029298.16	ENSMUST00000031238.13	4381	11	29106	-1164	1593	1164	3prime_fragment	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTCTTGTGTTCGTGTCT	6391	False	NA	NA	False	NA	NA	NA	105229036	105224331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_105228131_105228995
ENSMUSG00000029304.15_5	chr5	+	1398	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	5	7	2	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	4242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAAGGAGTCTGGTGGT	NA	False	NA	24	True	AATAAA	-11	NA	104582988	104588909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUSG00000029304.15_7	chr5	+	1450	7	FSM	ENSMUSG00000029304.15	ENSMUST00000112748.8	1456	7	2	4	2	0	multi-exon	FALSE	canonical	3	593	junction_1	2050.93187491822	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAAGGAGTCTGGTGGT	NA	False	NA	24	True	AATAAA	-11	NA	104582988	104588909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_104583115_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUSG00000029309.8_0	chr5	-	1520	8	ISM	ENSMUSG00000029309.8	ENSMUST00000031249.8	2759	11	21048	0	20754	0	3prime_fragment	FALSE	canonical	1	1	junction_2	1.03015750727543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTCTCCTCAAGATTAT	NA	False	NA	NA	False	AATAAA	-17	NA	104240551	104226976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_104227444_104232875_104233025_104233572_104233722_104234887_104235025_104236262_104236384_104237465_104237585_104238257_104238328_104240243
ENSMUSG00000029309.8_1	chr5	-	2454	11	FSM	ENSMUSG00000029309.8	ENSMUST00000031249.8	2759	11	303	2	9	-2	multi-exon	FALSE	canonical	1	1	junction_2	1.113552872566	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCTCCTCAAGATT	NA	False	NA	NA	False	AATAAA	-15	NA	104261296	104226978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_104227444_104232875_104233025_104233572_104233722_104234887_104235025_104236262_104236384_104237465_104237585_104238257_104238328_104240243_104241240_104242504_104242634_104245574_104245640_104261242
ENSMUSG00000029310.14_0	chr5	+	1480	8	NIC	ENSMUSG00000029310.14	novel	995	6	NA	NA	29	-14	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	99.0728447730687	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATTGCTGGTGACTTGTG	NA	False	NA	6	True	AATAAA	-9	NA	104194420	104213231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_104194705_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
ENSMUSG00000029310.14_14	chr5	+	1190	7	ISM	ENSMUSG00000029310.14	ENSMUST00000031250.14	1488	8	3708	21	2956	-21	3prime_fragment	FALSE	canonical	3	335	junction_1	7.99305253885453	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAACCCAATTGCTGGTG	NA	False	NA	-1	True	AATAAA	-2	NA	104198442	104213224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
ENSMUSG00000029310.14_5	chr5	+	1411	8	FSM	ENSMUSG00000029310.14	ENSMUST00000031250.14	1488	8	58	19	-41	-19	multi-exon	FALSE	canonical	3	305	junction_1	16.2468207250979	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCCAATTGCTGGTGAC	NA	False	NA	1	True	AATAAA	-4	NA	104194792	104213226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_104195013_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
ENSMUSG00000029311.17_0	chr5	-	167	1	ISM	ENSMUSG00000029311.17	ENSMUST00000031251.16	1825	7	31982	9	31901	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTATCTGTCTCTGTCCC	NA	False	NA	NA	False	AATAAA	-21	NA	104137803	104137636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_104137600_104137800
ENSMUSG00000029311.17_1	chr5	-	1095	7	FSM	ENSMUSG00000029311.17	ENSMUST00000031251.16	1825	7	72	658	-9	-658	multi-exon	FALSE	canonical	0	0	junction_2	2.86744175568088	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTGTATCTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	104169713	104138285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_104138461_104140683_104140801_104151037_104151176_104156444_104156552_104157660_104157793_104166039_104166148_104169395
ENSMUSG00000029311.17_2	chr5	-	2278	5	FSM	ENSMUSG00000029311.17	ENSMUST00000119025.2	2234	5	-44	0	37	0	multi-exon	FALSE	canonical	2	2	junction_3	2.54950975679639	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTTTGTTTTGTTT	NA	False	NA	NA	False	AATAAA	-11	NA	104169748	104149597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_104151176_104156444_104156552_104157660_104157793_104166039_104166148_104169395
ENSMUSG00000029312.13_1	chr5	-	3127	10	FSM	ENSMUSG00000029312.13	ENSMUST00000031254.9	3193	10	32	34	32	-4	multi-exon	FALSE	canonical	3	103	junction_9	11.7473401244707	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGCAGAAAAAAATGGAA	NA	False	NA	NA	False	AATAAA	-12	NA	104059093	104009949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_104011058_104012067_104012270_104015358_104015519_104015710_104015880_104018394_104018507_104019896_104020041_104022068_104022256_104023606_104024156_104033772_104034157_104058981
ENSMUSG00000029312.13_2	chr5	-	3134	10	NNC	ENSMUSG00000029312.13	novel	3193	10	NA	NA	22	-4	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_9	28.2991078688506	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGCAGAAAAAAATGGAA	NA	False	NA	NA	False	AATAAA	-12	NA	104059103	104009949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_104011058_104012067_104012270_104015358_104015519_104015710_104015880_104018394_104018507_104019896_104020041_104022068_104022256_104023606_104024156_104033772_104034154_104058981
ENSMUSG00000029312.13_6	chr5	-	3191	10	NNC	ENSMUSG00000029312.13	novel	3193	10	NA	NA	30	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	39.6851808644853	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGCAGAAAAAAATGGAA	NA	False	NA	NA	False	AATAAA	-12	NA	104059095	104009949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_104011058_104012067_104012270_104015358_104015519_104015710_104015880_104018394_104018507_104019896_104020041_104022068_104022256_104023606_104024156_104033772_104034157_104058919
ENSMUSG00000029313.19_2	chr5	+	7915	21	NIC	ENSMUSG00000029313.19	novel	1613	7	NA	NA	29	-481	combination_of_known_junctions	FALSE	canonical	3	246	junction_11	28.5472853350367	254	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGGAGTATGTTGTCAA	NA	False	NA	NA	False	ATTAAA	-9	NA	103840268	104002707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_103840470_103863215_103863272_103930989_103931111_103931521_103932380_103958928_103958974_103962847_103962935_103964078_103964116_103966800_103966853_103973845_103973901_103974008_103974047_103976213_103976377_103981335_103982326_103988921_103989020_103990092_103990334_103990853_103990955_103991073_103991135_103994099_103994234_103994901_103994974_103995579_103995718_103997215_103997443_103998567
ENSMUSG00000029313.19_55	chr5	+	6277	10	ISM	ENSMUSG00000029313.19	ENSMUST00000031256.6	8312	20	79290	13	49504	-13	3prime_fragment	FALSE	canonical	3	249	junction_2	26.2466929133727	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATGATTGGAGTTGAGC	NA	False	NA	11	True	AATAAA	-8	NA	103981728	104003175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_103982326_103988921_103989020_103990092_103990334_103990853_103990955_103991073_103991135_103994099_103994234_103994901_103994974_103995579_103995718_103997215_103997443_103998567
ENSMUSG00000029313.19_78	chr5	+	3057	1	ISM	ENSMUSG00000029313.19	ENSMUST00000054979.10	8323	20	98093	11	67896	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGATTGGAGTTGAGCCT	NA	False	NA	13	True	AATAAA	-10	NA	104000120	104003177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_104000100_104003200
ENSMUSG00000029314.15_1	chr5	+	2874	13	FSM	ENSMUSG00000029314.15	ENSMUST00000031255.15	2884	13	7	3	7	-3	multi-exon	FALSE	canonical	3	20	junction_3	3.86939558874797	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGTTGCATTATTC	NA	False	NA	2	True	AATAAA	-13	NA	100994091	101046962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_100994228_100994520_100994815_101005007_101005075_101031055_101031327_101032183_101032259_101032825_101032916_101033791_101033886_101037968_101038085_101039508_101039565_101040166_101040253_101040937_101041067_101041298_101041379_101045582
ENSMUSG00000029314.15_2	chr5	+	2844	12	NIC	ENSMUSG00000029314.15	novel	2884	13	NA	NA	-38	-11	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	8.45405668186376	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTTTAAATGAGTGTTG	NA	False	NA	-6	True	AATAAA	-5	NA	100994046	101046954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_100994228_100994520_100994815_101031055_101031327_101032183_101032259_101032825_101032916_101033791_101033886_101037968_101038085_101039508_101039565_101040166_101040253_101040937_101041067_101041298_101041379_101045582
ENSMUSG00000029314.15_4	chr5	+	2832	12	FSM	ENSMUSG00000029314.15	ENSMUST00000092990.4	3035	12	197	6	144	-3	multi-exon	FALSE	canonical	3	20	junction_2	3.94172425248705	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGTTGCATTATTC	NA	False	NA	2	True	AATAAA	-13	NA	100994426	101046962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_100994815_101005007_101005075_101031055_101031327_101032183_101032259_101032825_101032916_101033791_101033886_101037968_101038085_101039508_101039565_101040166_101040253_101040937_101041067_101041298_101041379_101045582
ENSMUSG00000029314.15_5	chr5	+	2105	9	ISM	ENSMUSG00000029314.15	ENSMUST00000092990.4	3035	12	37955	6	37902	-3	3prime_fragment	FALSE	canonical	3	23	junction_4	3.39116499156263	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGTTGCATTATTC	NA	False	NA	2	True	AATAAA	-13	NA	101032184	101046962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_101032259_101032825_101032916_101033791_101033886_101037968_101038085_101039508_101039565_101040166_101040253_101040937_101041067_101041298_101041379_101045582
ENSMUSG00000029314.15_6	chr5	+	3016	13	NIC	ENSMUSG00000029314.15	novel	3035	12	NA	NA	-43	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	8.09449401342254	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGTTGCATTATTC	NA	False	NA	2	True	AATAAA	-13	NA	100993535	101046962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_100993814_100994520_100994815_101005007_101005075_101031055_101031327_101032183_101032259_101032825_101032916_101033791_101033886_101037968_101038085_101039508_101039565_101040166_101040253_101040937_101041067_101041298_101041379_101045582
ENSMUSG00000029319.9_0	chr5	-	1711	7	FSM	ENSMUSG00000029319.9	ENSMUST00000031262.9	1743	7	29	3	-6	-3	multi-exon	FALSE	canonical	3	222	junction_5	48.3206880009887	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACGCGACTCTTCATTA	NA	False	NA	-4	True	AATAAA	-17	NA	100822121	100802591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100803338_100805683_100805873_100808037_100808172_100809702_100809789_100811445_100811568_100815757_100815925_100821854
ENSMUSG00000029319.9_1	chr5	-	3315	5	ISM	ENSMUSG00000029319.9	ENSMUST00000031262.9	1743	7	8545	3	-1320	-3	3prime_fragment	FALSE	canonical	3	317	junction_3	17.5979402203781	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACGCGACTCTTCATTA	7347	False	NA	-4	True	AATAAA	-17	NA	100813605	100802591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_100803338_100805683_100805873_100808037_100808172_100809702_100809789_100811445
ENSMUSG00000029319.9_3	chr5	-	1524	6	NIC	ENSMUSG00000029319.9	novel	1743	7	NA	NA	14	-3	combination_of_known_junctions	FALSE	canonical	3	79	junction_5	105.678758508983	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACGCGACTCTTCATTA	NA	False	NA	-4	True	AATAAA	-17	NA	100822101	100802591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100803338_100805683_100805873_100808037_100808172_100809702_100809789_100811445_100811568_100821854
ENSMUSG00000029326.14_2	chr5	+	1787	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	46	0	-13	0	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187889	100216619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
ENSMUSG00000029326.14_3	chr5	+	1371	7	FSM	ENSMUSG00000029326.14	ENSMUST00000031268.8	1420	7	-19	68	-19	-68	multi-exon	FALSE	canonical	3	27	junction_6	172.72618021983	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTTATTCTGATGCATT	NA	False	NA	10	True	TATAAA	-21	NA	100187883	100216551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657_100215801_100216154
ENSMUSG00000029328.16_1	chr5	-	1296	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	312	1144	-15	0	multi-exon	FALSE	canonical	3	572	junction_1	185.830183616271	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_10	chr5	-	913	1	NIC	ENSMUSG00000029328.16	novel	1842	2	NA	NA	435	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100183492	100182579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100182600_100183500
ENSMUSG00000029328.16_14	chr5	-	2561	7	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-15	0	intron_retention	FALSE	canonical	3	110	junction_6	363.263181300953	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
ENSMUSG00000029328.16_18	chr5	-	3438	5	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-15	0	intron_retention	FALSE	canonical	3	934	junction_2	102.524082536739	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671
ENSMUSG00000029328.16_2	chr5	-	3664	6	ISM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	-552	0	-199	0	intron_retention	FALSE	canonical	3	934	junction_3	96.8949947107693	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100187280	100182579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671
ENSMUSG00000029328.16_24	chr5	-	2700	6	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-15	0	intron_retention	FALSE	canonical	3	934	junction_2	94.4681957062799	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_4	chr5	-	2051	8	NIC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-15	0	intron_retention	FALSE	canonical	3	230	junction_1	297.206243239284	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_6	chr5	-	2415	7	FSM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	-41	0	-15	0	multi-exon	FALSE	canonical	3	934	junction_3	92.4764234218046	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_8	chr5	-	1401	9	FSM	ENSMUSG00000029328.16	ENSMUST00000086900.11	2149	9	754	-6	-15	0	multi-exon	FALSE	canonical	3	230	junction_2	358.236915322807	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_9	chr5	-	1442	8	NIC	ENSMUSG00000029328.16	novel	2752	8	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_7	355.117974073693	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
ENSMUSG00000029330.9_0	chr5	+	3915	13	FSM	ENSMUSG00000029330.9	ENSMUST00000031273.9	3924	13	-13	22	-13	-22	multi-exon	FALSE	canonical	3	31	junction_6	11.4561361529774	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGATCCAATGGTATTTT	NA	False	NA	-12	True	NA	NA	NA	101912982	101971702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_101913356_101929240_101929369_101939340_101939438_101944869_101944968_101946242_101946383_101954428_101954488_101956531_101956615_101957751_101957840_101960360_101960430_101962265_101962419_101963714_101963835_101965718_101965823_101969299
ENSMUSG00000029330.9_1	chr5	+	3679	10	NIC	ENSMUSG00000029330.9	novel	3924	13	NA	NA	-2	-7	combination_of_known_splicesites	FALSE	canonical	3	11	junction_6	17.1399468429099	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGACTTTGCGCTGCTG	NA	False	NA	3	True	AATAAA	-12	NA	101912993	101971717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_101913356_101929240_101929369_101939340_101939438_101944869_101944968_101946242_101946383_101954428_101954488_101962265_101962419_101963714_101963835_101965718_101965823_101969299
ENSMUSG00000029330.9_2	chr5	+	2036	12	NIC	ENSMUSG00000029330.9	novel	3924	13	NA	NA	-16	590	combination_of_known_splicesites	TRUE	canonical	2	12	junction_6	15.7096590806342	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGATTGTCCACTTTTCTC	NA	False	NA	NA	False	ATTAAA	-14	NA	101912979	101969903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_101913356_101929240_101929369_101939340_101939438_101944869_101944968_101946242_101946383_101954428_101954488_101957751_101957840_101960360_101960430_101962265_101962419_101963714_101963835_101965718_101965823_101969299
ENSMUSG00000029330.9_9	chr5	+	1639	1	ISM	ENSMUSG00000029330.9	ENSMUST00000031273.9	3924	13	57083	7	15665	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGACTTTGCGCTGCTG	1318	False	NA	3	True	AATAAA	-12	NA	101970078	101971717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_101970100_101971700
ENSMUSG00000029334.15_0	chr5	-	4791	19	FSM	ENSMUSG00000029334.15	ENSMUST00000161490.8	4968	19	163	14	-153	-14	multi-exon	FALSE	canonical	1	2	junction_7	5.01386965216377	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTAGTTCTGAACCATGT	NA	False	NA	-12	True	ATTAAA	-15	NA	99185047	99077645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_99079965_99082187_99082255_99090012_99090076_99091272_99091396_99095229_99095394_99114370_99114513_99115585_99115676_99117795_99117933_99119710_99119865_99120966_99121066_99124294_99124364_99127624_99127720_99128944_99129023_99136145_99136210_99140175_99140282_99142390_99142505_99145204_99145372_99172252_99172727_99184781
ENSMUSG00000029334.15_4	chr5	-	1589	9	ISM	ENSMUSG00000029334.15	ENSMUST00000031277.7	2618	19	-155	44562	-155	-28889	5prime_fragment	FALSE	canonical	3	9	junction_1	3.83242742918897	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCGGGCCTTCTGATCA	NA	False	NA	NA	False	ATTAAA	-12	NA	99185049	99124140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_99124364_99127624_99127720_99128944_99129023_99136145_99136210_99140175_99140282_99142390_99142505_99145204_99145372_99172252_99172727_99184781
ENSMUSG00000029334.15_5	chr5	-	4231	18	ISM	ENSMUSG00000029334.15	ENSMUST00000161490.8	4968	19	12783	9	12467	-9	3prime_fragment	FALSE	canonical	1	2	junction_7	5.13890109831566	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTGAACCATGTGTGTC	NA	False	NA	-7	True	ATTAAA	-20	NA	99172427	99077640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_99079965_99082187_99082255_99090012_99090076_99091272_99091396_99095229_99095394_99114370_99114513_99115585_99115676_99117795_99117933_99119710_99119865_99120966_99121066_99124294_99124364_99127624_99127720_99128944_99129023_99136145_99136210_99140175_99140282_99142390_99142505_99145204_99145372_99172252
ENSMUSG00000029334.15_7	chr5	-	2920	7	ISM	ENSMUSG00000029334.15	ENSMUST00000161490.8	4968	19	69584	13	-1011	-13	3prime_fragment	FALSE	canonical	2	7	junction_1	4.77551626063147	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAGTTCTGAACCATGTG	NA	False	NA	-11	True	ATTAAA	-16	NA	99115626	99077644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_99079965_99082187_99082255_99090012_99090076_99091272_99091396_99095229_99095394_99114370_99114513_99115585
ENSMUSG00000029334.15_8	chr5	-	1342	8	ISM	ENSMUSG00000029334.15	ENSMUST00000031277.7	2618	19	12273	44436	12273	-28763	internal_fragment	FALSE	canonical	3	9	junction_1	4.09579176766613	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCAGTTTGTTAGTGCTT	NA	False	NA	NA	False	TTTAAA	-18	NA	99172621	99124014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_99124364_99127624_99127720_99128944_99129023_99136145_99136210_99140175_99140282_99142390_99142505_99145204_99145372_99172252
ENSMUSG00000029344.16_0	chr5	+	1794	7	FSM	ENSMUSG00000029344.16	ENSMUST00000239473.2	1813	7	19	0	19	0	multi-exon	FALSE	canonical	3	176	junction_1	59.7847992571876	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424591	112463221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_112424638_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUSG00000029344.16_1	chr5	+	881	6	NIC	ENSMUSG00000029344.16	novel	1835	7	NA	NA	18	-2	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	115.943779479539	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACGAGTGAGTAGCTTT	NA	False	NA	19	True	AATAAA	-29	NA	112424590	112463219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_112424638_112451765_112451838_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUSG00000029344.16_14	chr5	+	1747	6	ISM	ENSMUSG00000029344.16	ENSMUST00000239473.2	1813	7	27192	2	3	-2	3prime_fragment	FALSE	canonical	3	300	junction_2	15.9323570133235	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACGAGTGAGTAGCTTT	2355	False	NA	19	True	AATAAA	-29	NA	112451764	112463219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUSG00000029344.16_17	chr5	+	1548	5	ISM	ENSMUSG00000029344.16	ENSMUST00000071455.7	1741	6	30987	0	-597	0	3prime_fragment	FALSE	canonical	3	300	junction_1	17.5552698640608	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	6150	False	NA	21	True	AATAAA	-31	NA	112455559	112463221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUSG00000029344.16_2	chr5	+	1892	7	NIC	ENSMUSG00000029344.16	novel	1813	7	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	128.99956933606	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424570	112463221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_112424638_112451765_112451838_112455431_112456421_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUSG00000029344.16_8	chr5	+	1833	7	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	87.1615677284942	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112436593	112463221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_112436679_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUSG00000029345.14_0	chr5	+	3124	14	FSM	ENSMUSG00000029345.14	ENSMUST00000031288.14	3560	14	44	392	-19	-392	multi-exon	FALSE	canonical	3	92	junction_4	15.3503464486856	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTGTCAGTGTACTGGG	NA	False	NA	NA	False	NA	NA	NA	112474267	112485547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_112474340_112475350_112475537_112475827_112476049_112477231_112477386_112477612_112477770_112478956_112479085_112479733_112479887_112480829_112481358_112481440_112481548_112482182_112482352_112482725_112482970_112483438_112483582_112483880_112484047_112484851
ENSMUSG00000029345.14_18	chr5	+	2179	7	ISM	ENSMUSG00000029345.14	ENSMUST00000031288.14	3560	14	6864	8	-2420	-8	3prime_fragment	FALSE	canonical	3	100	junction_2	12.8116700273184	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACACAATTAGGAAGTATA	4711	False	NA	6	True	AATAAA	-8	NA	112481087	112485931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_112481358_112481440_112481548_112482182_112482352_112482725_112482970_112483438_112483582_112483880_112484047_112484851
ENSMUSG00000029346.13_0	chr5	-	1070	7	FSM	ENSMUSG00000029346.13	ENSMUST00000146510.8	1064	7	-6	0	-6	0	multi-exon	FALSE	canonical	3	101	junction_3	14.8884742894182	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490892	112485257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_112485608_112485867_112485914_112486183_112486339_112487584_112487684_112487762_112487990_112488961_112489003_112490740
ENSMUSG00000029346.13_1	chr5	-	2808	6	ISM	ENSMUSG00000029346.13	ENSMUST00000146510.8	1064	7	-6	0	-6	0	intron_retention	FALSE	canonical	3	101	junction_3	15.8316139417306	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490892	112485257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_112485608_112485867_112485914_112486183_112486339_112487584_112487684_112487762_112487990_112488961
ENSMUSG00000029346.13_11	chr5	-	3885	5	FSM	ENSMUSG00000029346.13	ENSMUST00000155756.8	871	5	-3014	0	4	0	multi-exon	FALSE	canonical	3	38	junction_3	40.1154583670684	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490902	112485257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_112485608_112485867_112485914_112486183_112486434_112487584_112487684_112487762
ENSMUSG00000029346.13_19	chr5	-	2020	6	NIC	ENSMUSG00000029346.13	novel	1064	7	NA	NA	14	0	intron_retention	FALSE	canonical	3	101	junction_3	14.560219778561	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490870	112485257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_112485608_112485867_112485914_112486183_112486339_112487584_112487684_112487762_112489003_112490740
ENSMUSG00000029346.13_2	chr5	-	1188	7	NIC	ENSMUSG00000029346.13	novel	1110	7	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.7466473988403	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490889	112485257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_112485608_112485841_112485914_112486183_112486434_112487584_112487684_112487762_112487990_112488961_112489003_112490740
ENSMUSG00000029346.13_3	chr5	-	1113	7	FSM	ENSMUSG00000029346.13	ENSMUST00000031289.7	1110	7	-3	0	-3	0	multi-exon	FALSE	canonical	3	22	junction_1	42.3848112207926	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490909	112485257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_112485608_112485841_112485914_112486183_112486339_112487584_112487684_112487762_112487990_112488961_112489003_112490740
ENSMUSG00000029346.13_4	chr5	-	1329	6	NIC	ENSMUSG00000029346.13	novel	1110	7	NA	NA	-5	0	intron_retention	FALSE	canonical	3	101	junction_2	14.7972970504751	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490891	112485257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_112485914_112486183_112486339_112487584_112487684_112487762_112487990_112488961_112489003_112490740
ENSMUSG00000029346.13_7	chr5	-	1162	7	NIC	ENSMUSG00000029346.13	novel	1064	7	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	36.3168923046379	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490889	112485257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_112485608_112485867_112485914_112486183_112486434_112487584_112487684_112487762_112487990_112488961_112489003_112490740
ENSMUSG00000029348.12_0	chr5	-	2104	3	FSM	ENSMUSG00000029348.12	ENSMUST00000031291.9	2678	3	-520	1094	-520	-4	multi-exon	FALSE	canonical	3	26	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTAATCATCCTAAATT	NA	False	NA	-5	True	AATAGA	-24	NA	112540599	112533313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_112533728_112534624_112534739_112539023
ENSMUSG00000029348.12_2	chr5	-	1885	5	NIC	ENSMUSG00000029348.12	novel	2678	3	NA	NA	4	-14	combination_of_known_splicesites	FALSE	canonical	2	3	junction_4	10.2316909648406	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTGTCTAAATGTAATC	NA	False	NA	-15	True	AATAGA	-14	NA	112542728	112533323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_112533728_112534624_112534739_112539023_112540122_112541325_112541450_112542583
ENSMUSG00000029348.12_4	chr5	-	1751	4	NIC	ENSMUSG00000029348.12	novel	2678	3	NA	NA	14	-14	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	11.1455023315337	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTGTCTAAATGTAATC	NA	False	NA	-15	True	AATAGA	-14	NA	112542718	112533323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_112533728_112534624_112534739_112539023_112540122_112542583
ENSMUSG00000029348.12_5	chr5	-	2094	6	NNC	ENSMUSG00000029348.12	novel	808	4	NA	NA	10	-14	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_5	10.6320270880016	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTGTCTAAATGTAATC	NA	False	NA	-15	True	AATAGA	-14	NA	112542722	112533323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_112533728_112534624_112534739_112539023_112540122_112541325_112541450_112541650_112541866_112542583
ENSMUSG00000029348.12_6	chr5	-	2966	4	NIC	ENSMUSG00000029348.12	novel	2678	3	NA	NA	67	-4	intron_retention	FALSE	canonical	3	15	junction_3	6.0184900284226	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTAATCATCCTAAATT	NA	False	NA	-5	True	AATAGA	-24	NA	112542665	112533313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_112533728_112534624_112534739_112539023_112540122_112541325
ENSMUSG00000029352.15_0	chr5	-	2153	3	FSM	ENSMUSG00000029352.15	ENSMUST00000155042.8	1419	3	448	-1182	448	1	multi-exon	FALSE	canonical	3	12	junction_1	4.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTCTGTCTGTGTCACT	NA	False	NA	NA	False	AATAAA	-14	NA	113227809	113223707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_113225544_113226248_113226382_113227625
ENSMUSG00000029352.15_1	chr5	-	710	4	ISM	ENSMUSG00000029352.15	ENSMUST00000076069.13	816	5	706	1	430	-1	3prime_fragment	FALSE	canonical	3	12	junction_2	4.78423336480244	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCTGTCTGTGTCACTTC	NA	False	NA	NA	False	AATAAA	-16	NA	113227827	113223705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113223938_113225400_113225544_113226248_113226382_113227625
ENSMUSG00000029359.14_0	chr5	+	943	8	FSM	ENSMUSG00000029359.14	ENSMUST00000124648.8	981	8	62	-24	-43	-1	multi-exon	FALSE	canonical	3	17	junction_5	26.954231805876	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCGGCATCCCCATCTGT	NA	False	NA	8	True	AATAAA	-13	NA	118165891	118199934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_118166053_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194509_118194601_118194710_118197506_118197555_118199666
ENSMUSG00000029359.14_1	chr5	+	934	8	FSM	ENSMUSG00000029359.14	ENSMUST00000031304.14	1031	8	88	9	-39	-1	multi-exon	FALSE	canonical	3	55	junction_1	14.2499552451857	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCGGCATCCCCATCTGT	NA	False	NA	8	True	AATAAA	-13	NA	118165895	118199934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_118166053_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194504_118194601_118194710_118197506_118197555_118199666
ENSMUSG00000029359.14_15	chr5	+	3039	7	ISM	ENSMUSG00000029359.14	ENSMUST00000031304.14	1031	8	84	20	-43	-12	intron_retention	FALSE	canonical	3	55	junction_1	13.6137185711081	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCTAATGAGTCCGGCA	NA	False	NA	-3	True	AATAAA	-2	NA	118165891	118199923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118166053_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194504_118194601_118194710_118197506
ENSMUSG00000029359.14_5	chr5	+	907	8	NIC	ENSMUSG00000029359.14	novel	785	8	NA	NA	-31	-1	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	22.6445470302252	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCGGCATCCCCATCTGT	4337	False	NA	8	True	AATAAA	-13	NA	118174064	118199934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194504_118194601_118194710_118197506_118197555_118199666
ENSMUSG00000029359.14_6	chr5	+	830	7	NIC	ENSMUSG00000029359.14	novel	785	8	NA	NA	-24	-1	combination_of_known_splicesites	FALSE	canonical	3	3	junction_1	32.949456242352	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCGGCATCCCCATCTGT	4344	False	NA	8	True	AATAAA	-13	NA	118174071	118199934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_118174195_118191648_118191730_118192894_118193035_118194441_118194504_118194601_118194710_118197506_118197555_118199666
ENSMUSG00000029359.14_7	chr5	+	901	8	FSM	ENSMUSG00000029359.14	ENSMUST00000151792.8	785	8	-24	-92	-24	-5	multi-exon	FALSE	canonical	3	17	junction_5	31.162510181568	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGTCCGGCATCCCCAT	4344	False	NA	4	True	AATAAA	-9	NA	118174071	118199930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194509_118194601_118194710_118197506_118197555_118199666
ENSMUSG00000029361.19_17	chr5	+	2707	3	ISM	ENSMUSG00000029361.19	ENSMUST00000102557.10	4591	29	82479	-2240	30418	1785	3prime_fragment	FALSE	canonical	3	46	junction_1	6.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	118087657	118094214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118087894_118090829_118090949_118091862
ENSMUSG00000029361.19_3	chr5	+	5520	28	FSM	ENSMUSG00000029361.19	ENSMUST00000171055.2	4388	28	21	-1153	21	602	multi-exon	FALSE	canonical	2	8	junction_3	10.777205024873	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGTACTGACAGACAATAA	NA	False	NA	NA	False	NA	NA	NA	118005204	118093031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_118005992_118017348_118017476_118031890_118032020_118033845_118033992_118034737_118034901_118035775_118035868_118038535_118038678_118041885_118042026_118043375_118043551_118046054_118046157_118048122_118048318_118048831_118048918_118050787_118050933_118051861_118051967_118052448_118052508_118057460_118057578_118061308_118061484_118063678_118063818_118064517_118064597_118074483_118074678_118076201_118076372_118081189_118081401_118081883_118081972_118083880_118084003_118085484_118085634_118087698_118087894_118090829_118090949_118091862
ENSMUSG00000029361.19_30	chr5	+	257	1	ISM	ENSMUSG00000029361.19	ENSMUST00000142742.9	10123	29	116714	20	39389	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGGACTCA	NA	False	NA	-9	True	NA	NA	NA	118096628	118096885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118096600_118096900
ENSMUSG00000029363.15_1	chr5	-	1724	11	FSM	ENSMUSG00000029363.15	ENSMUST00000086461.13	2796	11	26	1046	1	468	multi-exon	TRUE	canonical	3	1613	junction_7	125.046431376509	1859	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAACCGTGCTGGGCTGTCT	NA	False	NA	-20	True	AATAAA	-16	NA	117527086	117517213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
ENSMUSG00000029364.16_0	chr5	+	2355	9	FSM	ENSMUSG00000029364.16	ENSMUST00000031309.16	2421	9	41	25	40	-25	multi-exon	FALSE	canonical	3	560	junction_4	52.4760361974873	1069	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAGAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	117495409	117516641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_117495539_117501655_117501825_117508755_117509001_117509153_117509286_117512177_117512279_117513833_117514007_117514561_117514673_117514755_117514864_117515454
ENSMUSG00000029366.11_0	chr5	+	2888	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	182	8	182	-8	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCTTTCTGAGACTTTA	NA	False	NA	19	True	AATAAA	-16	NA	88913036	88931132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
ENSMUSG00000029366.11_6	chr5	+	1709	1	ISM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	16569	8	12206	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCTTTCTGAGACTTTA	NA	False	NA	19	True	AATAAA	-16	NA	88929423	88931132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_88929400_88931100
ENSMUSG00000029381.17_0	chr5	+	6817	11	FSM	ENSMUSG00000029381.17	ENSMUST00000113055.9	6765	11	-48	-4	-48	0	multi-exon	FALSE	canonical	1	6	junction_2	46.2640249005639	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATATGGAGATTTTTGCG	5332	False	NA	17	True	AATGAA	-22	NA	92831245	93113177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_92831691_92928611_92928767_93067503_93067636_93081612_93081745_93087835_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
ENSMUSG00000029381.17_11	chr5	+	4242	7	ISM	ENSMUSG00000029381.17	ENSMUST00000113051.9	6435	10	43691	-6	3047	0	3prime_fragment	FALSE	canonical	3	112	junction_2	10.8730042868667	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGAATATGGAGATTTT	NA	False	NA	13	True	AATGAA	-18	NA	93089542	93113173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
ENSMUSG00000029381.17_15	chr5	+	2244	5	ISM	ENSMUSG00000029381.17	ENSMUST00000113051.9	6435	10	52955	-2	3063	2	3prime_fragment	FALSE	canonical	3	119	junction_4	9.75961064797157	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCAAATTGAATATGGAGA	5283	False	NA	9	True	AATGAA	-14	NA	93098806	93113169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
ENSMUSG00000029381.17_16	chr5	+	1581	4	ISM	ENSMUSG00000029381.17	ENSMUST00000113051.9	6435	10	54840	-6	4948	0	3prime_fragment	FALSE	canonical	3	119	junction_3	11.2644968324772	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGAATATGGAGATTTT	7168	False	NA	13	True	AATGAA	-18	NA	93100691	93113173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_93100890_93103119_93103271_93109949_93110223_93112214
ENSMUSG00000029381.17_2	chr5	+	6418	10	FSM	ENSMUSG00000029381.17	ENSMUST00000113054.9	6401	10	-17	0	-17	0	multi-exon	FALSE	canonical	1	6	junction_1	38.4967531098403	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATATGGAGATTTTTGCG	2163	False	NA	17	True	AATGAA	-22	NA	92957219	93113177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_92957421_93067503_93067636_93081612_93081745_93087835_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
ENSMUSG00000029381.17_4	chr5	+	6440	10	FSM	ENSMUSG00000029381.17	ENSMUST00000113051.9	6435	10	1	-6	1	0	multi-exon	FALSE	canonical	3	62	junction_1	24.0066863114075	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGAATATGGAGATTTT	NA	False	NA	13	True	AATGAA	-18	NA	93045852	93113173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_93046080_93067503_93067636_93081612_93081745_93087835_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
ENSMUSG00000029381.17_8	chr5	+	6126	9	NIC	ENSMUSG00000029381.17	novel	687	3	NA	NA	21	-4	intron_retention	FALSE	canonical	3	17	junction_1	36.4946485803056	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGATAGTCAAATTGAATA	NA	False	NA	3	True	AATGAA	-8	NA	93073286	93113163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_93073342_93081612_93081745_93087835_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
ENSMUSG00000029385.15_0	chr5	+	2469	8	FSM	ENSMUSG00000029385.15	ENSMUST00000031331.13	2810	8	332	9	0	-2	multi-exon	FALSE	canonical	3	45	junction_3	8.90998064543581	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACATGTATTCCTATTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	93415447	93424081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_93415657_93416480_93416619_93417123_93417262_93418652_93418904_93419059_93419139_93419221_93419321_93421196_93421403_93422732
ENSMUSG00000029385.15_2	chr5	+	2665	7	NIC	ENSMUSG00000029385.15	novel	2810	8	NA	NA	-48	-10	intron_retention	FALSE	canonical	3	45	junction_3	9.41039614232874	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTCCTTACATGTATTC	NA	False	NA	NA	False	AATAAA	-11	NA	93415399	93424073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_93415657_93416480_93416619_93417123_93417262_93418652_93419139_93419221_93419321_93421196_93421403_93422732
ENSMUSG00000029385.15_3	chr5	+	6558	3	ISM	ENSMUSG00000029385.15	ENSMUST00000121127.2	2570	7	-732	189	-7	-189	intron_retention	FALSE	canonical	3	45	junction_2	13.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTGTGTGTGATAATTG	NA	False	NA	NA	False	CATAAA	-16	NA	93415440	93423894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_93416619_93417123_93417262_93418652
ENSMUSG00000029385.15_6	chr5	+	2437	7	FSM	ENSMUSG00000029385.15	ENSMUST00000121127.2	2570	7	130	3	130	-3	multi-exon	FALSE	canonical	3	45	junction_2	9.62057979310787	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACATGTATTCCTATTTC	NA	False	NA	NA	False	AATAAA	-18	NA	93416302	93424080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_93416619_93417123_93417262_93418652_93418904_93419059_93419139_93419221_93419321_93421196_93421403_93422732
ENSMUSG00000029387.11_0	chr5	+	1810	13	FSM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	22	840	-4	253	multi-exon	FALSE	canonical	3	570	junction_1	79.1684210331928	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAATTTTCCTTAGAGTGT	NA	False	NA	18	True	AATAAA	-19	NA	124717224	124734903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
ENSMUSG00000029387.11_22	chr5	+	1770	12	ISM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	3307	841	-1400	252	3prime_fragment	FALSE	canonical	3	664	junction_10	64.3651771772428	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAATTTTCCTTAGAGTG	NA	False	NA	17	True	AATAAA	-18	NA	124720509	124734902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
ENSMUSG00000029388.15_1	chr5	-	1507	9	FSM	ENSMUSG00000029388.15	ENSMUST00000031334.15	2013	9	64	442	-6	-442	multi-exon	FALSE	canonical	0	0	junction_4	226.339761199839	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATACGGTATTGCCTCTC	NA	False	NA	-7	True	AATAAA	-15	NA	124717130	124708717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124717063
ENSMUSG00000029388.15_4	chr5	-	1763	9	NIC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	7	-441	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	291.131172111473	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATACGGTATTGCCTCTCT	NA	False	NA	-6	True	AATAAA	-16	NA	124717088	124708716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124716766
ENSMUSG00000029389.18_0	chr5	+	2088	14	FSM	ENSMUSG00000029389.18	ENSMUST00000071057.14	2799	14	23	688	-9	-688	multi-exon	FALSE	canonical	3	73	junction_5	12.5669803088427	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGTGTGTAATTCCTA	NA	False	NA	1	True	NA	NA	NA	124690949	124707035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897_124706191_124706618
ENSMUSG00000029389.18_1	chr5	+	4078	13	NIC	ENSMUSG00000029389.18	novel	2799	14	NA	NA	0	-688	intron_retention	FALSE	canonical	3	73	junction_4	12.209684225601	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGTGTGTAATTCCTA	NA	False	NA	1	True	NA	NA	NA	124690958	124707035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_124691103_124692605_124692657_124692733_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897_124706191_124706618
ENSMUSG00000029390.14_2	chr5	+	1980	4	FSM	ENSMUSG00000029390.14	ENSMUST00000060226.11	2074	4	84	10	84	0	multi-exon	FALSE	canonical	3	3477	junction_2	89.3395520223577	2463	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTATTTTGTGTTT	NA	False	NA	2	True	AATAAA	-12	NA	124678841	124688559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124679105_124681034_124681228_124684958_124685067_124687143
ENSMUSG00000029392.13_1	chr5	-	2229	7	FSM	ENSMUSG00000029392.13	ENSMUST00000062153.12	2249	7	13	7	13	-7	multi-exon	FALSE	canonical	3	33	junction_4	6.39661368746516	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCAACTTGTTTCCTGTG	NA	False	NA	-5	True	NA	NA	NA	124669441	124631149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124631908_124639902_124639996_124641617_124641797_124652581_124652807_124653580_124653700_124659313_124659465_124668737
ENSMUSG00000029392.13_4	chr5	-	1277	4	ISM	ENSMUSG00000029392.13	ENSMUST00000062153.12	2249	7	12	21362	12	-20778	5prime_fragment	FALSE	canonical	3	33	junction_1	7.11805216802087	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACACAGAAATATCAT	NA	False	NA	NA	False	NA	NA	NA	124669442	124652504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_124652807_124653580_124653700_124659313_124659465_124668737
ENSMUSG00000029394.12_0	chr5	-	1247	4	FSM	ENSMUSG00000029394.12	ENSMUST00000031341.11	1315	4	44	24	44	-24	multi-exon	FALSE	canonical	3	1091	junction_3	81.9308651648856	887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTGTATTACGATGT	4298	False	NA	-22	True	AATAAA	-14	NA	124492690	124483503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124484218_124486663_124486791_124488140_124488236_124492379
ENSMUSG00000029394.12_3	chr5	-	2514	3	FSM	ENSMUSG00000029394.12	ENSMUST00000111473.8	715	3	-1496	-303	-96	-24	multi-exon	FALSE	canonical	3	1213	junction_1	38.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTGTATTACGATGT	7175	False	NA	-22	True	AATAAA	-14	NA	124489813	124483503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124484218_124486663_124486791_124488140
ENSMUSG00000029397.16_0	chr5	-	1363	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	218	386	-115	-289	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAATTTTCTTTTCTTTTC	1553	False	NA	-5	True	ATTAAA	-19	NA	92110709	92097148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
ENSMUSG00000029401.9_0	chr5	-	1325	4	FSM	ENSMUSG00000029401.9	ENSMUST00000031347.8	1391	4	10	56	10	-56	multi-exon	FALSE	canonical	3	23	junction_1	3.55902608401044	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTCTATTACTGTTTC	NA	False	NA	-8	True	ATTAAA	-15	NA	124616419	124601383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124601875_124606649_124606755_124607760_124607913_124615842
ENSMUSG00000029402.9_0	chr5	+	1091	2	FSM	ENSMUSG00000029402.9	ENSMUST00000031349.9	1115	2	21	3	21	-3	multi-exon	FALSE	canonical	3	127	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTTTTGAGGTGGGGTT	2241	False	NA	7	True	AATAAA	-21	NA	124621217	124629184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124621310_124628185
ENSMUSG00000029402.9_1	chr5	+	1087	2	FSM	ENSMUSG00000029402.9	ENSMUST00000111453.2	1181	2	106	-12	106	-5	multi-exon	FALSE	canonical	3	28	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACACCTTTTGAGGTGGGG	2650	False	NA	5	True	AATAAA	-19	NA	124621626	124629182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124621717_124628185
ENSMUSG00000029402.9_2	chr5	+	551	1	ISM	ENSMUSG00000029402.9	ENSMUST00000031349.9	1115	2	7437	3	7113	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTTTTGAGGTGGGGTT	9657	False	NA	7	True	AATAAA	-21	NA	124628633	124629184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_124628600_124629200
ENSMUSG00000029403.15_2	chr5	-	3980	14	FSM	ENSMUSG00000029403.15	ENSMUST00000086978.12	4066	14	3	83	2	-83	multi-exon	FALSE	canonical	0	0	junction_13	2.30255839186089	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATGGCTTTAATTCATA	NA	False	NA	NA	False	AATAAA	-20	NA	92190898	92154015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92155994_92156823_92156913_92164980_92165088_92165240_92165365_92167237_92167332_92167876_92168173_92169961_92170092_92172794_92172884_92178841_92178988_92180982_92181096_92181437_92181617_92185026_92185222_92187096_92187296_92190657
ENSMUSG00000029403.15_4	chr5	-	4079	13	FSM	ENSMUSG00000029403.15	ENSMUST00000113143.8	2513	13	74	-1640	50	-90	multi-exon	FALSE	canonical	0	0	junction_1	2.22984802670994	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCACGATATATGGCTTTA	NA	False	NA	NA	False	AATAAA	-13	NA	92190481	92154022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92155994_92164980_92165088_92165240_92165365_92167237_92167332_92167876_92168173_92169961_92170092_92172794_92172884_92178841_92178988_92180982_92181096_92181437_92181617_92185026_92185222_92187096_92187296_92190045
ENSMUSG00000029403.15_5	chr5	-	4194	14	FSM	ENSMUSG00000029403.15	ENSMUST00000113140.5	2559	14	23	-1658	23	-91	multi-exon	FALSE	canonical	1	1	junction_2	2.00590843237005	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCACGATATATGGCTTT	NA	False	NA	NA	False	AATAAA	-12	NA	92190508	92154023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92155994_92156823_92156913_92164980_92165088_92165240_92165365_92167237_92167332_92167876_92168173_92169961_92170092_92172794_92172884_92178841_92178988_92180982_92181096_92181437_92181617_92185026_92185222_92187096_92187296_92190045
ENSMUSG00000029403.15_6	chr5	-	3872	13	FSM	ENSMUSG00000029403.15	ENSMUST00000069937.11	3976	13	10	94	10	-94	multi-exon	FALSE	canonical	0	0	junction_1	2.51108652888656	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAGCACGATATATGGC	NA	False	NA	NA	False	AATAAA	-9	NA	92190890	92154026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92155994_92164980_92165088_92165240_92165365_92167237_92167332_92167876_92168173_92169961_92170092_92172794_92172884_92178841_92178988_92180982_92181096_92181437_92181617_92185026_92185222_92187096_92187296_92190657
ENSMUSG00000029404.16_0	chr5	+	1177	5	FSM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	12	3	-11	2	multi-exon	FALSE	canonical	3	507	junction_1	46.874833333037	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTCCTGTTGTGTTGCA	NA	False	NA	21	True	ATTAAA	-14	NA	124254173	124256256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
ENSMUSG00000029404.16_11	chr5	+	990	6	NIC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	-11	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	229.659399981799	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCCTGTTGTGTTGCATT	NA	False	NA	23	True	ATTAAA	-16	NA	124254173	124256258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_124254308_124254496_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
ENSMUSG00000029404.16_4	chr5	+	2088	1	NIC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	7	2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTCCTGTTGTGTTGCA	NA	False	NA	21	True	ATTAAA	-14	NA	124254168	124256256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_124254200_124256300
ENSMUSG00000029405.17_0	chr5	-	4179	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	3	0	1	0	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	1891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTATCTATGTCCCTA	NA	False	NA	-18	True	AATAAA	-15	NA	92231575	92200022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUSG00000029405.17_1	chr5	-	4278	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	-58	-2336	1	0	multi-exon	FALSE	canonical	3	524	junction_5	444.293682188997	884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTATCTATGTCCCTA	NA	False	NA	-18	True	AATAAA	-15	NA	92231575	92200022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUSG00000029405.17_12	chr5	-	4217	12	FSM	ENSMUSG00000029405.17	ENSMUST00000169094.8	2716	12	52	-1553	52	0	multi-exon	FALSE	canonical	3	261	junction_11	559.822935407495	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTATCTATGTCCCTA	NA	False	NA	-18	True	AATAAA	-15	NA	92231320	92200022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
ENSMUSG00000029405.17_5	chr5	-	2468	1	ISM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	28926	18	12892	0	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTATCTATGTCCCTA	NA	False	NA	-18	True	AATAAA	-15	NA	92202490	92200022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_92200000_92202500
ENSMUSG00000029405.17_7	chr5	-	4118	11	FSM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	96	18	52	0	multi-exon	FALSE	canonical	3	261	junction_10	456.056180749697	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTATCTATGTCCCTA	NA	False	NA	-18	True	AATAAA	-15	NA	92231320	92200022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
ENSMUSG00000029406.16_0	chr5	-	3938	9	ISM	ENSMUSG00000029406.16	ENSMUST00000086123.11	6620	24	91075	-1	-789	1	3prime_fragment	FALSE	canonical	3	6	junction_8	8.95038406997152	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTCTCATTACTGTGG	-3	True	NA	-10	True	ATTAAA	-17	NA	124263406	124256751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_124259650_124259730_124259860_124259935_124260120_124260632_124260783_124260951_124261101_124261187_124261305_124261605_124261723_124262001_124262151_124263361
ENSMUSG00000029406.16_11	chr5	-	3936	18	ISM	ENSMUSG00000029406.16	ENSMUST00000161938.8	5866	25	53715	547	6794	0	3prime_fragment	FALSE	canonical	3	7	junction_9	7.73658007651164	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTCGGCTGCTTCCTTT	NA	False	NA	NA	False	TTTAAA	-6	NA	124271530	124258356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_124259650_124259730_124259860_124259935_124260120_124260632_124260783_124260951_124261101_124261187_124261305_124261605_124261723_124262001_124262151_124262860_124263023_124263361_124263527_124265239_124265411_124266665_124266845_124267226_124267466_124268269_124268390_124268533_124268724_124269157_124269406_124271230_124271302_124271427
ENSMUSG00000029406.16_17	chr5	-	1956	11	NIC	ENSMUSG00000029406.16	novel	1690	10	NA	NA	-45	-8	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	9.73447481891037	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCTGTGTCCGCTTCAG	8173	False	NA	NA	False	AATAAA	-12	NA	124387868	124270875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_124271039_124271230_124271302_124271427_124271533_124273210_124273307_124274164_124274465_124278586_124278815_124280131_124280254_124281495_124281711_124290606_124290783_124354378_124354481_124387490
ENSMUSG00000029406.16_2	chr5	-	5407	25	FSM	ENSMUSG00000029406.16	ENSMUST00000162812.8	6952	25	-45	1590	-45	14	multi-exon	FALSE	canonical	3	6	junction_8	7.71857427825171	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTCTTAACTCAGTGT	8173	False	NA	NA	False	TTTAAA	-20	NA	124387868	124258342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124259650_124259730_124259860_124259935_124260120_124260632_124260783_124260951_124261101_124261187_124261305_124261605_124261723_124262001_124262151_124263361_124263527_124265239_124265411_124266665_124266845_124267226_124267466_124268269_124268390_124268533_124268724_124269157_124269406_124271230_124271302_124271427_124271533_124273210_124273307_124274164_124274465_124278586_124278815_124280131_124280254_124281495_124281711_124290606_124290783_124354378_124354481_124387490
ENSMUSG00000029406.16_3	chr5	-	3056	3	FSM	ENSMUSG00000029406.16	ENSMUST00000161479.2	869	3	198	-2385	198	0	multi-exon	FALSE	canonical	3	25	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCGTCTCATTACTGTG	3438	False	NA	-11	True	ATTAAA	-16	NA	124259965	124256752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124259650_124259730_124259860_124259935
ENSMUSG00000029406.16_4	chr5	-	2095	1	ISM	ENSMUSG00000029406.16	ENSMUST00000086123.11	6620	24	95634	0	1316	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCGTCTCATTACTGTG	4556	False	NA	-11	True	ATTAAA	-16	NA	124258847	124256752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_124256800_124258800
ENSMUSG00000029406.16_5	chr5	-	7145	26	NIC	ENSMUSG00000029406.16	novel	6792	26	NA	NA	-38	-6	combination_of_known_junctions	FALSE	canonical	3	7	junction_9	8.21179639299465	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTTCCTTCTCGTCTCAT	8180	False	NA	-18	True	ATTAAA	-9	NA	124387861	124256759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_124259650_124259730_124259860_124259935_124260120_124260632_124260783_124260951_124261101_124261187_124261305_124261605_124261723_124262001_124262151_124262860_124263023_124263361_124263527_124265239_124265411_124266665_124266845_124267226_124267466_124268269_124268390_124268533_124268724_124269157_124269406_124271230_124271302_124271427_124271533_124273210_124273307_124274164_124274465_124278586_124278815_124280131_124280254_124281495_124281711_124290606_124290783_124354378_124354481_124387490
ENSMUSG00000029406.16_8	chr5	-	3869	8	FSM	ENSMUSG00000029406.16	ENSMUST00000159628.8	2755	8	480	-1594	480	-9	multi-exon	FALSE	canonical	3	20	junction_7	5.20204041600946	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGGCTTCCTTCTCGTCT	1266	False	NA	-21	True	ATTAAA	-6	NA	124262137	124256762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124259650_124259730_124259860_124259935_124260120_124260632_124260783_124260951_124261101_124261187_124261305_124261605_124261723_124262001
ENSMUSG00000029407.11_0	chr5	+	3888	24	FSM	ENSMUSG00000029407.11	ENSMUST00000031355.10	3898	24	9	1	0	-1	multi-exon	TRUE	canonical	0	0	junction_12	100.480471444838	895	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAATCTCTGTCATTGTT	NA	False	NA	9	True	AATAAA	-17	NA	92285805	92350653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756_92329969_92335093_92335205_92335556_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
ENSMUSG00000029410.12_5	chr5	-	683	3	FSM	ENSMUSG00000029410.12	ENSMUST00000201236.2	732	3	35	14	35	-14	multi-exon	FALSE	canonical	0	0	junction_2	11	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAATTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92376845	92374561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92375087_92376505_92376594_92376775
ENSMUSG00000029413.15_0	chr5	-	1805	11	FSM	ENSMUSG00000029413.15	ENSMUST00000113102.10	2414	11	9	600	4	174	multi-exon	FALSE	canonical	3	29	junction_5	5.44885309033011	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAATGCTAGCTG	9207	False	NA	NA	False	AATAAA	-6	NA	92426020	92406117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92406803_92407412_92407491_92409210_92409240_92410367_92410435_92411268_92411332_92411449_92411623_92412939_92413017_92415900_92415992_92420302_92420430_92424777_92424943_92425770
ENSMUSG00000029413.15_4	chr5	-	1279	9	ISM	ENSMUSG00000029413.15	ENSMUST00000159345.8	1629	11	5647	-115	30	115	3prime_fragment	FALSE	canonical	3	29	junction_5	6.03634823382482	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTTGAAAAATATATGAC	NA	False	NA	NA	False	AATAAA	-15	NA	92420377	92406176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_92406803_92407412_92407491_92409210_92409240_92410367_92410435_92411268_92411332_92411449_92411623_92412939_92413017_92415900_92415992_92420302
ENSMUSG00000029414.12_0	chr5	+	6950	64	FSM	ENSMUSG00000029414.12	ENSMUST00000031366.12	6961	64	2	9	2	-7	multi-exon	FALSE	canonical	3	266	junction_8	72.5550989140863	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTTGATGTTGGTTTCT	NA	False	NA	20	True	AATAAA	-12	NA	123887790	123959647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_123887888_123891885_123892061_123893736_123893858_123895861_123895978_123896505_123896585_123897083_123897162_123898395_123898431_123898665_123898780_123900575_123900670_123901857_123901911_123902177_123902294_123903059_123903115_123903974_123904074_123905832_123905877_123905981_123906048_123906354_123906431_123907675_123907802_123907915_123908006_123909150_123909205_123910148_123910211_123911999_123912112_123913765_123913910_123914455_123914513_123914601_123914704_123916094_123916212_123916307_123916452_123917690_123917790_123919012_123919117_123919208_123919309_123919716_123919852_123920904_123921025_123922243_123922317_123923472_123923541_123924097_123924379_123924951_123925125_123925569_123925668_123927080_123927220_123928177_123928235_123928955_123929120_123929562_123929668_123932206_123932336_123934098_123934216_123934575_123934686_123935676_123935882_123937863_123937954_123939857_123940030_123940114_123940174_123940284_123940502_123941044_123941119_123941366_123941578_123941690_123941801_123945323_123945371_123947097_123947177_123948875_123948995_123949368_123949505_123950072_123950169_123950693_123950751_123952769_123952825_123953028_123953093_123954729_123954860_123956513_123956604_123957058_123957205_123957932_123958024_123959443
ENSMUSG00000029414.12_114	chr5	+	3681	31	ISM	ENSMUSG00000029414.12	ENSMUST00000031366.12	6961	64	36450	12	-1036	-10	3prime_fragment	FALSE	canonical	3	303	junction_17	77.5388719718482	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATAGCTTTGATGTTGGTT	9138	False	NA	17	True	AATAAA	-9	NA	123924238	123959644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_123924379_123924951_123925125_123925569_123925668_123927080_123927220_123928177_123928235_123928955_123929120_123929562_123929668_123932206_123932336_123934098_123934216_123934575_123934686_123935676_123935882_123937863_123937954_123939857_123940030_123940114_123940174_123940284_123940502_123941044_123941119_123941366_123941578_123941690_123941801_123945323_123945371_123947097_123947177_123948875_123948995_123949368_123949505_123950072_123950169_123950693_123950751_123952769_123952825_123953028_123953093_123954729_123954860_123956513_123956604_123957058_123957205_123957932_123958024_123959443
ENSMUSG00000029414.12_5	chr5	+	6826	63	NIC	ENSMUSG00000029414.12	novel	6961	64	NA	NA	2	-10	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	86.4327991685586	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATAGCTTTGATGTTGGTT	NA	False	NA	17	True	AATAAA	-9	NA	123887790	123959644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_123887888_123891885_123892061_123895861_123895978_123896505_123896585_123897083_123897162_123898395_123898431_123898665_123898780_123900575_123900670_123901857_123901911_123902177_123902294_123903059_123903115_123903974_123904074_123905832_123905877_123905981_123906048_123906354_123906431_123907675_123907802_123907915_123908006_123909150_123909205_123910148_123910211_123911999_123912112_123913765_123913910_123914455_123914513_123914601_123914704_123916094_123916212_123916307_123916452_123917690_123917790_123919012_123919117_123919208_123919309_123919716_123919852_123920904_123921025_123922243_123922317_123923472_123923541_123924097_123924379_123924951_123925125_123925569_123925668_123927080_123927220_123928177_123928235_123928955_123929120_123929562_123929668_123932206_123932336_123934098_123934216_123934575_123934686_123935676_123935882_123937863_123937954_123939857_123940030_123940114_123940174_123940284_123940502_123941044_123941119_123941366_123941578_123941690_123941801_123945323_123945371_123947097_123947177_123948875_123948995_123949368_123949505_123950072_123950169_123950693_123950751_123952769_123952825_123953028_123953093_123954729_123954860_123956513_123956604_123957058_123957205_123957932_123958024_123959443
ENSMUSG00000029415.5_0	chr5	-	4975	22	FSM	ENSMUSG00000029415.5	ENSMUST00000031364.5	5020	22	39	6	4	-6	multi-exon	FALSE	canonical	3	262	junction_13	31.6626205793221	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCGTCCTTGTGAAATCT	NA	False	NA	-12	True	AATAAA	-11	NA	92457844	92431874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
ENSMUSG00000029415.5_2	chr5	-	1873	1	ISM	ENSMUSG00000029415.5	ENSMUST00000031364.5	5020	22	24136	6	10289	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCGTCCTTGTGAAATCT	9877	False	NA	-12	True	AATAAA	-11	NA	92433747	92431874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_92431900_92433700
ENSMUSG00000029416.18_1	chr5	-	2694	8	FSM	ENSMUSG00000029416.18	ENSMUST00000031367.15	2732	8	35	3	0	0	multi-exon	FALSE	canonical	3	79	junction_6	13.4346490805814	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAAGAGCTTCCTGATG	NA	False	NA	-8	True	TATAAA	-15	NA	127694445	127672730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756_127680926_127681174_127681253_127681601_127681771_127685835_127686126_127693878
ENSMUSG00000029416.18_4	chr5	-	2639	8	FSM	ENSMUSG00000029416.18	ENSMUST00000153832.8	2673	8	34	0	-3	0	multi-exon	FALSE	canonical	3	33	junction_6	28.9418840620514	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAAGAGCTTCCTGATG	NA	False	NA	-8	True	TATAAA	-15	NA	127694448	127672730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756_127680926_127681174_127681253_127681601_127681713_127685835_127686126_127693878
ENSMUSG00000029416.18_7	chr5	-	1701	6	ISM	ENSMUSG00000029416.18	ENSMUST00000153832.8	2673	8	12848	0	37	0	3prime_fragment	FALSE	canonical	3	104	junction_4	6.11228271597445	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAAGAGCTTCCTGATG	NA	False	NA	-8	True	TATAAA	-15	NA	127681634	127672730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756_127680926_127681174_127681253_127681601
ENSMUSG00000029419.9_0	chr2	-	4807	1	FSM	ENSMUSG00000029419.9	ENSMUST00000188161.2	2925	1	-345	-1537	21	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAGCTGCTGCTAATAA	8099	False	NA	NA	False	AGTAAA	-11	NA	25470254	25465447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25465400_25470300
ENSMUSG00000029422.16_0	chr5	-	2327	12	FSM	ENSMUSG00000029422.16	ENSMUST00000050827.14	2344	12	10	7	1	-3	multi-exon	FALSE	canonical	3	64	junction_7	200.336700053759	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACAAGTCCATTGTATGC	4356	False	NA	NA	False	AATAAA	-8	NA	123887442	123866495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUSG00000029422.16_15	chr5	-	1921	11	NIC	ENSMUSG00000029422.16	novel	2270	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_7	166.25718029607	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4356	False	NA	-8	True	AATAAA	-13	NA	123887442	123866786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123887351
ENSMUSG00000029422.16_28	chr5	-	1945	11	FSM	ENSMUSG00000029422.16	ENSMUST00000057795.12	2270	11	31	294	0	0	multi-exon	FALSE	canonical	3	64	junction_7	167.947640650293	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4354	False	NA	-8	True	AATAAA	-13	NA	123887444	123866786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123887351
ENSMUSG00000029422.16_3	chr5	-	2020	12	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_7	199.263561501216	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4350	False	NA	-8	True	AATAAA	-13	NA	123887448	123866786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUSG00000029422.16_5	chr5	-	1845	10	FSM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	33	-283	0	0	multi-exon	FALSE	canonical	3	403	junction_7	46.2523939987681	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4354	False	NA	-8	True	AATAAA	-13	NA	123887444	123866786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
ENSMUSG00000029422.16_7	chr5	-	1936	11	FSM	ENSMUSG00000029422.16	ENSMUST00000182955.8	1685	11	-8	-243	1	0	multi-exon	FALSE	canonical	3	100	junction_10	161.696753214157	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4356	False	NA	-8	True	AATAAA	-13	NA	123887442	123866786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUSG00000029423.11_2	chr5	+	4210	22	NNC	ENSMUSG00000029423.11	novel	1691	14	NA	NA	5023	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	3.19934800614111	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTGTGGGCGTCTCTGT	NA	False	NA	NA	False	AATAAA	-17	NA	128784610	128832537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_128784871_128784986_128785181_128816107_128816189_128816497_128816613_128817987_128818114_128818555_128818771_128819056_128819179_128820290_128820372_128820843_128821042_128821337_128821450_128822467_128822595_128822711_128822830_128823280_128823396_128824355_128824544_128824898_128824972_128826909_128827111_128827261_128827366_128827894_128827966_128828045_128828200_128829646_128829773_128831004_128831153_128831256
ENSMUSG00000029423.11_9	chr5	+	3724	20	ISM	ENSMUSG00000029423.11	ENSMUST00000086056.8	4016	22	2897	6	1581	-6	3prime_fragment	FALSE	canonical	0	0	junction_4	3.03168859450835	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTACTCTTGTGGGCGTC	1785	False	NA	NA	False	AATAAA	-12	NA	128816134	128832532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_128816189_128816497_128816613_128817987_128818114_128818555_128818771_128819056_128819179_128820290_128820372_128820843_128821042_128821337_128821450_128822467_128822595_128822711_128822830_128823280_128823396_128824355_128824544_128824898_128824972_128826909_128827111_128827261_128827366_128827894_128827966_128828045_128828200_128829646_128829773_128831004_128831153_128831256
ENSMUSG00000029426.9_0	chr5	-	2026	12	FSM	ENSMUSG00000029426.9	ENSMUST00000031377.9	4698	12	-5	2677	-5	-2677	multi-exon	TRUE	canonical	3	99	junction_7	16.1496104397404	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTGGTTGGGCCCTGG	NA	False	NA	-6	True	AATAAA	-14	NA	92653501	92591849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92592144_92594162_92594322_92596403_92596456_92597729_92597804_92599205_92599325_92601898_92602069_92602590_92602711_92607900_92607993_92608612_92608802_92609795_92609944_92633055_92633214_92653050
ENSMUSG00000029426.9_2	chr5	-	2223	1	ISM	ENSMUSG00000029426.9	ENSMUST00000031377.9	4698	12	62098	3	62098	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTTCACTGTGAACTGT	NA	False	NA	-14	True	ATTAAA	-13	NA	92591398	92589175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_92589200_92591400
ENSMUSG00000029427.12_0	chr5	-	2694	14	FSM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	101	1491	-81	6	multi-exon	FALSE	non_canonical	2	263	junction_13	50.4357344906314	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTAATAAATTAGTTTTCT	6498	False	NA	-32	True	AATAAA	-26	NA	123859006	123837855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
ENSMUSG00000029427.12_1	chr5	-	945	1	ISM	ENSMUSG00000029427.12	ENSMUST00000196282.5	4350	14	20386	1476	2704	29	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGAACCAAGACTTGGGT	NA	False	NA	-9	True	AATAAA	-14	NA	123838777	123837832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_123837800_123838800
ENSMUSG00000029428.14_12	chr5	-	1568	8	FSM	ENSMUSG00000029428.14	ENSMUST00000151712.6	1127	8	15	-456	1	456	multi-exon	FALSE	canonical	3	44	junction_1	6.09449400220044	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATATTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129085598	129067248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_129068166_129068266_129068341_129069243_129069353_129070558_129070633_129071859_129071935_129073425_129073526_129076573_129076652_129085457
ENSMUSG00000029428.14_2	chr5	-	2886	11	FSM	ENSMUSG00000029428.14	ENSMUST00000031378.14	2939	11	43	10	4	-4	multi-exon	FALSE	canonical	3	41	junction_2	6.30555310817378	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAATCGTTTGTGC	NA	False	NA	NA	False	ATTAAA	-17	NA	129085595	129061630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_129063495_129064781_129064907_129065865_129065977_129068027_129068166_129068266_129068341_129069243_129069353_129070558_129070633_129071859_129071935_129073425_129073526_129076573_129076652_129085457
ENSMUSG00000029428.14_5	chr5	-	5141	9	NIC	ENSMUSG00000029428.14	novel	2769	10	NA	NA	2	-8	intron_retention	FALSE	canonical	3	44	junction_2	6.15299723711948	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCAAACAAGAAATCGTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	129085608	129061634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_129065977_129068027_129068166_129068266_129068341_129069243_129069353_129070558_129070633_129071859_129071935_129073425_129073526_129076573_129076652_129085457
ENSMUSG00000029430.14_0	chr5	+	1061	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	155	1161	22	-1161	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	6602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACAAGTGAATCATCCCT	497	False	NA	NA	False	AATAAA	-19	NA	129097287	129100226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_4	chr5	+	1056	6	FSM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	206	1161	206	-1161	multi-exon	FALSE	canonical	3	14794	junction_4	293.478040064329	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACAAGTGAATCATCCCT	751	False	NA	NA	False	AATAAA	-19	NA	129097541	129100226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029432.13_0	chr5	+	1984	10	FSM	ENSMUSG00000029432.13	ENSMUST00000086046.10	2112	10	51	77	13	0	multi-exon	FALSE	canonical	3	290	junction_9	37.917389085507	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGATGTCTAATTTTTAC	7818	False	NA	12	True	AATAAA	-18	NA	129802177	129835314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142
ENSMUSG00000029432.13_1	chr5	+	1908	9	NIC	ENSMUSG00000029432.13	novel	2112	10	NA	NA	-5	-1	intron_retention	FALSE	canonical	2	5	junction_7	123.725439481943	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAGATGTCTAATTTTTA	7798	False	NA	11	True	AATAAA	-17	NA	129802157	129835313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129831905_129831990_129834142
ENSMUSG00000029433.17_0	chr5	-	1335	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	41	200	1	-200	multi-exon	FALSE	canonical	3	603	junction_3	53.1902246658162	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGAGTCTTCAGGCTGT	8963	False	NA	-10	True	ATTAAA	-19	NA	123662198	123649967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUSG00000029433.17_11	chr5	-	1032	5	FSM	ENSMUSG00000029433.17	ENSMUST00000031385.7	681	5	-2	-349	1	349	multi-exon	FALSE	canonical	3	603	junction_2	56.3493566955294	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAGCTTTAAGCATTTT	8963	False	NA	NA	False	AGTAAA	-21	NA	123662198	123655299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUSG00000029433.17_7	chr5	-	2010	5	ISM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	49	206	6	-206	intron_retention	FALSE	canonical	3	603	junction_3	28.8736471544556	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGAGAGTGAGTCTTCA	8971	False	NA	-16	True	ATTAAA	-13	NA	123662190	123649973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317
ENSMUSG00000029434.13_0	chr5	-	3749	13	FSM	ENSMUSG00000029434.13	ENSMUST00000031388.13	4235	13	41	445	-18	-445	multi-exon	FALSE	canonical	3	140	junction_1	30.3840007240653	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTCTGTCTCAATTTAC	9974	False	NA	-13	True	ATTAAA	-18	NA	123711060	123667166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123669285_123669887_123670057_123671920_123672059_123673276_123673415_123674595_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
ENSMUSG00000029434.13_5	chr5	-	4360	12	NIC	ENSMUSG00000029434.13	novel	4235	13	NA	NA	-25	-444	intron_retention	TRUE	canonical	3	161	junction_1	28.1134067014945	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCTGTCTCAATTTACA	10001	False	NA	-12	True	ATTAAA	-19	NA	123711067	123667165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123670057_123671920_123672059_123673276_123673415_123674595_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
ENSMUSG00000029436.10_0	chr5	+	3501	10	FSM	ENSMUSG00000029436.10	ENSMUST00000031390.10	6422	10	30	2891	30	-2891	multi-exon	FALSE	canonical	3	158	junction_6	22.9879195327556	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAGGTTGACAGCTCAGT	NA	False	NA	8	True	AATAAA	-14	NA	129661262	129685272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129661513_129671607_129671741_129672017_129672148_129672468_129672753_129673625_129673803_129675722_129675823_129678996_129679080_129679165_129679319_129682578_129682837_129683339
ENSMUSG00000029436.10_19	chr5	+	1275	1	ISM	ENSMUSG00000029436.10	ENSMUST00000031390.10	6422	10	22766	2890	10309	-2890	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGGTTGACAGCTCAGTG	NA	False	NA	9	True	AATAAA	-15	NA	129683998	129685273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_129684000_129685300
ENSMUSG00000029436.10_5	chr5	+	3370	10	NNC	ENSMUSG00000029436.10	novel	6422	10	NA	NA	25	-2890	at_least_one_novel_splicesite	TRUE	canonical	3	19	junction_8	58.5586126125877	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGGTTGACAGCTCAGTG	NA	False	NA	9	True	AATAAA	-15	NA	129661257	129685273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_129661513_129671607_129671741_129672017_129672148_129672468_129672753_129673625_129673803_129675722_129675823_129678996_129679080_129679165_129679319_129682715_129682837_129683339
ENSMUSG00000029438.10_1	chr5	+	3756	6	FSM	ENSMUSG00000029438.10	ENSMUST00000031391.9	4718	6	37	925	-15	-15	multi-exon	FALSE	canonical	3	24	junction_2	4.53431361950185	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCTGATCATGAGTTTG	NA	False	NA	NA	False	AATAAA	-6	NA	123482547	123512130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_123482785_123489929_123490012_123494003_123494101_123499253_123499422_123507395_123507518_123509080
ENSMUSG00000029438.10_4	chr5	+	1221	1	ISM	ENSMUSG00000029438.10	ENSMUST00000120593.5	4161	8	29021	7	28355	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGAGTTTGGTGGCTGA	299	False	NA	NA	False	AATAAA	-14	NA	123510917	123512138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_123510900_123512100
ENSMUSG00000029439.15_1	chr5	+	3447	19	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	-8	-5	combination_of_known_junctions	FALSE	canonical	3	39	junction_15	22.5492602052145	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAGCAGCCTGGGGCTCT	NA	False	NA	8	True	AATAAA	-21	NA	129578295	129648440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620444_129626517_129626749_129627760_129627952_129631506_129631773_129636532_129636686_129637743_129637870_129646704_129646879_129647539_129647613_129648065
ENSMUSG00000029439.15_2	chr5	+	3210	18	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	-8	-5	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	23.627296395231	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAGCAGCCTGGGGCTCT	NA	False	NA	8	True	AATAAA	-21	NA	129578295	129648440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620360_129626517_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
ENSMUSG00000029439.15_3	chr5	+	3281	18	FSM	ENSMUSG00000029439.15	ENSMUST00000053737.9	3313	18	24	8	-1	-5	multi-exon	FALSE	canonical	3	56	junction_11	20.649823847033	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAGCAGCCTGGGGCTCT	NA	False	NA	8	True	AATAAA	-21	NA	129578308	129648440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620444_129626517_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
ENSMUSG00000029439.15_32	chr5	+	4851	7	ISM	ENSMUSG00000029439.15	ENSMUST00000199925.5	5127	18	44788	5	-2902	-5	3prime_fragment	FALSE	canonical	3	63	junction_3	22.9595054147272	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAGCAGCCTGGGGCTCT	NA	False	NA	8	True	AATAAA	-21	NA	129623102	129648440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
ENSMUSG00000029439.15_37	chr5	+	3297	4	FSM	ENSMUSG00000104814.2_ENSMUSG00000029439.15	ENSMUST00000199692.2	1277	4	-2028	8	1984	-5	multi-exon	FALSE	canonical	3	104	junction_1	11.1455023315337	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAGCAGCCTGGGGCTCT	NA	False	NA	8	True	AATAAA	-21	NA	129635194	129648440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129637870_129646704_129646879_129647539_129647613_129648065
ENSMUSG00000029439.15_4	chr5	+	1800	1	FSM	ENSMUSG00000029439.15	ENSMUST00000198423.2	655	1	-1148	3	0	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTGGCCTTTTTCCTG	NA	False	NA	NA	False	AATAAA	-24	NA	129578309	129580109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129578300_129580100
ENSMUSG00000029439.15_5	chr5	+	3234	18	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	-1	-5	combination_of_known_junctions	FALSE	canonical	2	8	junction_2	26.6125604499534	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAGCAGCCTGGGGCTCT	NA	False	NA	8	True	AATAAA	-21	NA	129578308	129648440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_129578661_129581046_129581170_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620444_129626517_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
ENSMUSG00000029439.15_6	chr5	+	3350	19	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	-1	-5	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	24.9767793394753	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAGCAGCCTGGGGCTCT	NA	False	NA	8	True	AATAAA	-21	NA	129578308	129648440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620360_129626517_129626749_129627760_129627952_129631506_129631773_129636532_129636686_129637743_129637870_129646704_129646879_129647539_129647613_129648065
ENSMUSG00000029440.16_0	chr5	+	1352	6	FSM	ENSMUSG00000029440.16	ENSMUST00000100729.9	2597	6	71	1174	3	430	multi-exon	FALSE	canonical	3	158	junction_2	18.6868938028769	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATTTGTGCTGTCAGTA	NA	False	NA	18	True	NA	NA	NA	123366323	123387020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384256_123384346_123386355
ENSMUSG00000029440.16_2	chr5	+	1348	6	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	8	434	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	75.5761867257141	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGCTGTCAGTATATT	NA	False	NA	22	True	NA	NA	NA	123366328	123387024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384259_123384346_123386355
ENSMUSG00000029440.16_3	chr5	+	1254	5	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	1	433	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	81.8183964643649	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTGCTGTCAGTATAT	NA	False	NA	21	True	NA	NA	NA	123366321	123387023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_123366508_123377604_123377814_123379894_123379997_123384256_123384346_123386355
ENSMUSG00000029446.15_0	chr5	-	1136	6	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	8214	6	-22	-6	3prime_fragment	FALSE	canonical	3	674	junction_1	180.962537559573	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGATTCAGTAGTTTT	NA	False	NA	-8	True	ATTAAA	-16	NA	129856299	129842627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085
ENSMUSG00000029446.15_3	chr5	-	1476	8	FSM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	251	6	9	-6	multi-exon	FALSE	canonical	3	66	junction_7	460.03695503731	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGATTCAGTAGTTTT	9008	False	NA	-8	True	ATTAAA	-16	NA	129864262	129842627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085_129856313_129856425_129856509_129864018
ENSMUSG00000029447.14_0	chr5	+	2162	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	405	21	405	-21	multi-exon	TRUE	canonical	3	3618	junction_3	465.957308149311	4679	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAAGCTACTGGATCAT	NA	False	NA	17	True	AATAAA	-9	NA	129864466	129875191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
ENSMUSG00000029449.12_1	chr5	-	1929	5	FSM	ENSMUSG00000029449.12	ENSMUST00000031401.6	2208	5	275	4	12	-4	multi-exon	TRUE	canonical	1	1	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCATCATGTAATGGCACT	NA	False	NA	NA	False	NA	NA	NA	123270480	123256244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123257658_123258358_123258494_123258573_123258684_123269929_123270018_123270297
ENSMUSG00000029452.19_0	chr5	+	1359	11	FSM	ENSMUSG00000029452.19	ENSMUST00000094357.11	1366	11	29	-22	29	2	multi-exon	FALSE	canonical	3	13	junction_1	4.13400532171888	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATGTGCGTCATTTGCA	NA	False	NA	NA	False	AATAAA	-13	NA	121601243	121633479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121620395_121620501_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266_121632341_121633050
ENSMUSG00000029452.19_1	chr5	+	1256	10	FSM	ENSMUSG00000029452.19	ENSMUST00000031405.12	1288	10	25	7	25	0	multi-exon	FALSE	canonical	2	4	junction_4	6.43102050155013	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTATGTGCGTCATTTG	NA	False	NA	NA	False	AATAAA	-11	NA	121601239	121633477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266_121632341_121633050
ENSMUSG00000029452.19_2	chr5	+	1118	10	ISM	ENSMUSG00000029452.19	ENSMUST00000094357.11	1366	11	9	949	9	0	5prime_fragment	FALSE	canonical	3	13	junction_1	4.29469957557504	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTAGTACCAGTACTTCT	NA	False	NA	NA	False	TATAAA	-16	NA	121601223	121632508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121620395_121620501_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266
ENSMUSG00000029454.16_1	chr5	-	2012	14	FSM	ENSMUSG00000029454.16	ENSMUST00000031410.14	2234	14	208	14	208	0	multi-exon	FALSE	canonical	0	0	junction_9	50.8494703910793	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTGCTTAAAGTTGCTA	NA	False	NA	-10	True	AATAAA	-16	NA	121683760	121663114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121663303_121663725_121663831_121664801_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397_121672494_121673916_121674007_121675174_121675284_121676455_121676554_121677234_121677311_121678564_121678639_121683227
ENSMUSG00000029454.16_8	chr5	-	2008	14	FSM	ENSMUSG00000029454.16	ENSMUST00000111783.8	1513	14	-499	4	206	0	multi-exon	FALSE	canonical	0	0	junction_9	58.7492918250155	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTGCTTAAAGTTGCTA	NA	False	NA	-10	True	AATAAA	-16	NA	121683762	121663114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121663303_121663725_121663831_121664807_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397_121672494_121673916_121674007_121675174_121675284_121676455_121676554_121677234_121677311_121678564_121678639_121683227
ENSMUSG00000029455.15_0	chr5	-	1945	13	FSM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	238	1684	-4	167	multi-exon	TRUE	canonical	3	476	junction_10	93.9036148872283	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCCACGGGGTCAGTT	NA	False	NA	-31	True	AATAAA	-11	NA	121731649	121705773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
ENSMUSG00000029455.15_1	chr5	-	1244	8	ISM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	17837	1685	-860	166	3prime_fragment	FALSE	canonical	3	622	junction_7	68.8443971606126	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCCACGGGGTCAGT	NA	False	NA	-32	True	AATAAA	-10	NA	121714050	121705774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958
ENSMUSG00000029456.13_0	chr5	-	3608	21	FSM	ENSMUSG00000029456.13	ENSMUST00000111770.2	3626	21	17	1	1	0	multi-exon	FALSE	canonical	3	24	junction_2	12.9348366823861	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCTGTTCTGAGCTAGA	NA	False	NA	-8	True	NA	NA	NA	121798560	121759091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121759443_121760052_121760131_121760741_121760886_121764110_121764284_121765327_121765487_121767963_121768055_121768160_121768299_121768707_121768849_121769339_121769741_121770551_121770726_121772739_121772886_121775306_121775458_121777186_121777369_121780674_121780744_121783431_121783574_121784764_121784925_121785897_121786057_121787416_121787612_121790018_121790168_121794076_121794277_121798355
ENSMUSG00000029456.13_3	chr5	-	3334	20	ISM	ENSMUSG00000029456.13	ENSMUST00000031412.12	3826	21	4337	1	4337	-1	3prime_fragment	FALSE	canonical	3	24	junction_2	13.1465214003838	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGTTCTGAGCTAGATT	NA	False	NA	-6	True	NA	NA	NA	121794205	121759089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121759443_121760052_121760131_121760741_121760886_121764110_121764284_121765327_121765487_121767963_121768055_121768160_121768299_121768707_121768849_121769339_121769741_121770551_121770726_121772739_121772886_121775306_121775458_121777186_121777369_121780674_121780744_121783431_121783574_121784764_121784925_121785897_121786057_121787416_121787612_121790018_121790168_121794076
ENSMUSG00000029456.13_5	chr5	-	1582	9	ISM	ENSMUSG00000029456.13	ENSMUST00000137789.8	2071	11	3315	-1	1197	0	3prime_fragment	FALSE	canonical	3	24	junction_2	15.204851199535	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTGTTCTGAGCTAGAT	NA	False	NA	-7	True	NA	NA	NA	121769645	121759090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121759443_121760052_121760131_121760741_121760886_121764110_121764284_121765327_121765487_121767963_121768055_121768160_121768299_121768707_121768849_121769339
ENSMUSG00000029456.13_6	chr5	-	3602	21	NNC	ENSMUSG00000029456.13	novel	3626	21	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	15.2118374958451	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATATCCTGTTCTGAGC	NA	False	NA	-12	True	NA	NA	NA	121798559	121759095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_121759443_121760052_121760131_121760741_121760886_121764110_121764284_121765327_121765487_121767963_121768055_121768160_121768299_121768707_121768849_121769339_121769741_121770551_121770726_121772739_121772886_121775306_121775458_121777187_121777369_121780674_121780744_121783431_121783574_121784764_121784925_121785897_121786057_121787416_121787612_121790018_121790168_121794076_121794277_121798355
ENSMUSG00000029456.13_9	chr5	-	3010	18	ISM	ENSMUSG00000029456.13	ENSMUST00000031412.12	3826	21	10971	7	-2724	-4	3prime_fragment	FALSE	canonical	3	24	junction_2	13.5337588924063	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATATCCTGTTCTGAGC	NA	False	NA	-12	True	NA	NA	NA	121787571	121759095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121759443_121760052_121760131_121760741_121760886_121764110_121764284_121765327_121765487_121767963_121768055_121768160_121768299_121768707_121768849_121769339_121769741_121770551_121770726_121772739_121772886_121775306_121775458_121777186_121777369_121780674_121780744_121783431_121783574_121784764_121784925_121785897_121786057_121787416
ENSMUSG00000029458.15_1	chr5	+	3715	12	FSM	ENSMUSG00000029458.15	ENSMUST00000031414.15	3744	12	14	15	3	-2	multi-exon	FALSE	canonical	3	111	junction_6	24.4408545656822	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCAAAGAGTTACGTTTGA	921	False	NA	5	True	AATAAA	-15	NA	121798639	121825304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_121798912_121800062_121800225_121801358_121801555_121803161_121803352_121810147_121810262_121813292_121813442_121816826_121816903_121817273_121817413_121817879_121817990_121820842_121820933_121822433_121822538_121823191
ENSMUSG00000029458.15_16	chr5	+	1594	1	FSM	ENSMUSG00000029458.15	ENSMUST00000196897.2	4318	1	2724	0	2724	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTTACGTTTGAGTCT	NA	False	NA	9	True	AATAAA	-19	NA	121823714	121825308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_121823700_121825300
ENSMUSG00000029458.15_2	chr5	+	3776	12	NIC	ENSMUSG00000029458.15	novel	3744	12	NA	NA	-1	1	combination_of_known_junctions	TRUE	canonical	3	9	junction_2	41.136740329767	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGAGTTACGTTTGAGTC	917	False	NA	8	True	AATAAA	-18	NA	121798635	121825307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121798912_121800062_121800225_121801304_121801555_121803161_121803352_121810147_121810262_121813292_121813442_121816826_121816903_121817273_121817413_121817879_121817990_121820842_121820933_121822433_121822538_121823191
ENSMUSG00000029458.15_4	chr5	+	1150	4	ISM	ENSMUSG00000029458.15	ENSMUST00000031414.15	3744	12	17	21635	6	-20	5prime_fragment	FALSE	canonical	3	161	junction_3	9.97775303139718	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAATACAA	924	False	NA	NA	False	NA	NA	NA	121798642	121803684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_121798912_121800062_121800225_121801358_121801555_121803161
ENSMUSG00000029461.18_1	chr7	+	6245	8	FSM	ENSMUSG00000029461.18	ENSMUST00000207875.2	4077	8	-38	-2130	-2	-69	multi-exon	FALSE	canonical	3	35	junction_2	3.48173074484398	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAACAAATAAAAAACATT	NA	False	NA	NA	False	TTTAAA	-21	NA	100355888	100490519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100356101_100436010_100436099_100462126_100462208_100473338_100473465_100480534_100480678_100483215_100483391_100484533_100484665_100485230
ENSMUSG00000029461.18_3	chr7	+	6351	9	FSM	ENSMUSG00000029461.18	ENSMUST00000049053.9	6609	9	-19	277	-1	-2	multi-exon	FALSE	canonical	0	0	junction_2	16.4829457318769	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAGTTTGATCAAATAAT	NA	False	NA	NA	False	NA	NA	NA	100355889	100490586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100356101_100363321_100363362_100436010_100436099_100462126_100462208_100473338_100473465_100480534_100480678_100483215_100483391_100484533_100484665_100485230
ENSMUSG00000029461.18_4	chr7	+	6608	9	FSM	ENSMUSG00000029461.18	ENSMUST00000107042.9	6388	9	27	-247	-22	-28	multi-exon	TRUE	canonical	0	0	junction_3	17.2699160391705	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACC	NA	False	NA	NA	False	ATTAAA	-12	NA	100355868	100490835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100356101_100436010_100436099_100462126_100462208_100467942_100467970_100473338_100473465_100480534_100480678_100483215_100483391_100484533_100484665_100485230
ENSMUSG00000029461.18_7	chr7	+	5418	2	ISM	ENSMUSG00000029461.18	ENSMUST00000216021.2	968	8	49019	-5180	49019	-4	3prime_fragment	FALSE	canonical	3	37	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAGTAGTTTGATCAAATA	NA	False	NA	NA	False	NA	NA	NA	100484600	100490584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100484665_100485230
ENSMUSG00000029461.18_8	chr7	+	4068	1	ISM	ENSMUSG00000029461.18	ENSMUST00000049053.9	6609	9	130859	28	51186	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACC	NA	False	NA	NA	False	ATTAAA	-12	NA	100486767	100490835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100486800_100490800
ENSMUSG00000029462.19_1	chr5	+	961	4	FSM	ENSMUSG00000029462.19	ENSMUST00000155671.8	2716	4	53	1702	0	-4	multi-exon	FALSE	canonical	3	1453	junction_1	367.656844837078	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAGACTTTCTTGAAAAC	732	False	NA	13	True	AATAAA	-13	NA	122492484	122501345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122492540_122498075_122498268_122500098_122500335_122500867
ENSMUSG00000029462.19_10	chr5	+	911	3	ISM	ENSMUSG00000029462.19	ENSMUST00000118830.8	1014	5	5627	0	2385	0	3prime_fragment	FALSE	canonical	3	2105	junction_2	106	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTTCTTGAAAACCTGT	6322	False	NA	17	True	AATAAA	-17	NA	122498074	122501349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_122498268_122500098_122500335_122500867
ENSMUSG00000029462.19_2	chr5	+	984	5	FSM	ENSMUSG00000029462.19	ENSMUST00000118830.8	1014	5	29	1	5	-1	multi-exon	FALSE	canonical	3	527	junction_1	833.067074130289	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACTTTCTTGAAAACCTG	724	False	NA	16	True	AATAAA	-16	NA	122492476	122501348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122492540_122494856_122494869_122498075_122498268_122500098_122500335_122500867
ENSMUSG00000029463.6_0	chr5	-	1356	7	FSM	ENSMUSG00000029463.6	ENSMUST00000031419.6	1388	7	26	6	26	-6	multi-exon	FALSE	canonical	3	223	junction_4	23.7235232534199	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACTGAATTTTAAATT	NA	False	NA	-26	True	ATTAAA	-15	NA	122510401	122502648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_122502983_122504376_122504460_122505410_122505583_122505661_122505792_122507579_122507702_122508577_122508637_122509945
ENSMUSG00000029464.11_0	chr5	+	1483	8	FSM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	99	10	23	-10	multi-exon	FALSE	canonical	3	424	junction_4	35.5154464814327	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGAAAACTGTGTTTGA	8138	False	NA	NA	False	AATAAA	-32	NA	122510612	122520955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110_122520240_122520323
ENSMUSG00000029464.11_10	chr5	+	1554	7	FSM	ENSMUSG00000029464.11	ENSMUST00000127608.8	2198	7	695	-51	44	-10	multi-exon	FALSE	canonical	3	424	junction_4	30.9861079984061	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGAAAACTGTGTTTGA	8159	False	NA	NA	False	AATAAA	-32	NA	122510633	122520955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519558_122520110_122520240_122520323
ENSMUSG00000029464.11_6	chr5	+	1566	7	ISM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	99	11	23	-11	intron_retention	FALSE	canonical	3	424	junction_4	38.3608596821755	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAGAAAACTGTGTTTG	8138	False	NA	NA	False	AATAAA	-31	NA	122510612	122520954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110
ENSMUSG00000029465.15_0	chr5	+	849	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	40	10	-4	-10	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCTTACACACACTGT	4528	False	NA	28	True	AATAAA	-43	NA	122529980	122544232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
ENSMUSG00000029466.12_0	chr5	+	2261	11	FSM	ENSMUSG00000029466.12	ENSMUST00000031422.10	2751	11	24	466	-13	-466	multi-exon	FALSE	canonical	3	226	junction_7	29.6310647800581	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGACACCCTTTGAGACT	NA	False	NA	22	True	AATAAA	-18	NA	122560530	122582509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352_122579504_122581866
ENSMUSG00000029466.12_1	chr5	+	1976	10	FSM	ENSMUSG00000029466.12	ENSMUST00000119792.2	3599	10	-10	1633	-10	-2	multi-exon	FALSE	canonical	3	226	junction_7	31.1071426040332	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACAGCTTTTACCTGTCA	NA	False	NA	NA	False	ATTAAA	-21	NA	122560533	122579864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352
ENSMUSG00000029467.16_0	chr5	-	4471	20	FSM	ENSMUSG00000029467.16	ENSMUST00000031423.10	4486	20	16	-1	16	1	multi-exon	FALSE	canonical	3	1036	junction_17	105.58760524925	2390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAGAAAAATAACTGTCT	7293	False	NA	-27	True	AATAAA	-14	NA	122640272	122594401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
ENSMUSG00000029467.16_3	chr5	-	4479	20	NNC	ENSMUSG00000029467.16	novel	4486	20	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	284.082622291629	231	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAGAAAAATAACTGTCT	7284	False	NA	-27	True	AATAAA	-14	NA	122640281	122594401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599926_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
ENSMUSG00000029467.16_5	chr5	-	3178	13	ISM	ENSMUSG00000029467.16	ENSMUST00000031423.10	4486	20	32552	-3	31944	3	3prime_fragment	FALSE	canonical	3	1098	junction_8	90.9555370619196	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAAAATAACTGTCTTG	6779	False	NA	-25	True	AATAAA	-16	NA	122607736	122594399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412
ENSMUSG00000029468.18_0	chr5	+	4875	13	FSM	ENSMUSG00000029468.18	ENSMUST00000100737.10	4936	13	56	5	28	0	multi-exon	FALSE	canonical	3	11	junction_11	5.09015935135848	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATTTAAGAATTCTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	122782029	122822347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122795074_122795148_122796770_122796868_122801639_122801721_122802607_122802738_122804206_122804344_122808500_122808592_122811417_122811484_122811728_122811879_122814724_122814827_122818869
ENSMUSG00000029468.18_1	chr5	+	761	4	FSM	ENSMUSG00000029468.18	ENSMUST00000086247.6	712	4	-82	33	-12	-33	multi-exon	TRUE	canonical	2	5	junction_3	10.4029910228848	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAACAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	122781989	122793292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122793041
ENSMUSG00000029468.18_10	chr5	+	2621	8	ISM	ENSMUSG00000099324.3_ENSMUSG00000029468.18	ENSMUST00000199371.2	1848	13	13166	-1310	13166	-32	3prime_fragment	FALSE	canonical	3	11	junction_6	3.60272006083385	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTACTGAGCCATCTC	NA	False	NA	NA	False	NA	NA	NA	122801652	122820746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_122801721_122802607_122802738_122804206_122804344_122808500_122808592_122811417_122811484_122811728_122811879_122814724_122814827_122818869
ENSMUSG00000029468.18_8	chr5	+	1825	1	FSM	ENSMUSG00000029468.18	ENSMUST00000197042.2	2103	1	273	5	273	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCATTTATTTAAGAATT	NA	False	NA	NA	False	AATAAA	-11	NA	122820517	122822342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122820500_122822300
ENSMUSG00000029469.15_0	chr5	-	2653	19	FSM	ENSMUSG00000029469.15	ENSMUST00000031426.14	2950	19	-1	298	-1	-294	multi-exon	FALSE	canonical	3	41	junction_3	9.90510530540242	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACATAGTTGTGTCAA	1242	False	NA	-7	True	AATAAA	-33	NA	122752582	122688564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142_122729290_122731112_122731209_122732587_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
ENSMUSG00000029469.15_1	chr5	-	2828	18	NIC	ENSMUSG00000029469.15	novel	2950	19	NA	NA	0	-14	combination_of_known_junctions	FALSE	canonical	3	12	junction_16	14.5402436403627	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATATTAAACTTGTATG	1243	False	NA	NA	False	ATTAAA	-2	NA	122752581	122688284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142_122729290_122731112_122731209_122732587_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122749005_122749171_122752500
ENSMUSG00000029469.15_13	chr5	-	3147	19	NIC	ENSMUSG00000029469.15	novel	2950	19	NA	NA	28	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_18	14.8668991843634	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCTCTTTTTACTTCA	1288	False	NA	NA	False	ATTAAA	-18	NA	122752536	122688268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142_122729290_122731112_122731209_122732587_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752256
ENSMUSG00000029470.16_0	chr5	+	1970	12	FSM	ENSMUSG00000029470.16	ENSMUST00000031429.14	2702	12	34	698	-2	-4	multi-exon	FALSE	canonical	3	87	junction_5	9.63207451716048	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGATCCTTGTCTGTGCT	NA	False	NA	11	True	ATTAAA	-16	NA	122845640	122867103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
ENSMUSG00000029470.16_1	chr5	+	1819	11	NIC	ENSMUSG00000029470.16	novel	2702	12	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	28.3167794778997	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGATCCTTGTCTGTGCT	NA	False	NA	11	True	ATTAAA	-16	NA	122845643	122867103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_122845851_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
ENSMUSG00000029470.16_12	chr5	+	171	1	ISM	ENSMUSG00000029470.16	ENSMUST00000132062.2	513	2	75	365	75	-365	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	122862792	122862963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_122862800_122863000
ENSMUSG00000029470.16_3	chr5	+	1886	11	FSM	ENSMUSG00000029470.16	ENSMUST00000081554.13	1887	11	-3	4	1	-4	multi-exon	FALSE	canonical	3	9	junction_5	30.411182153938	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGATCCTTGTCTGTGCT	NA	False	NA	11	True	ATTAAA	-16	NA	122845643	122867103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
ENSMUSG00000029471.14_0	chr5	-	2442	15	NIC	ENSMUSG00000029471.14	novel	2751	16	NA	NA	-6	-219	intron_retention	FALSE	canonical	3	5	junction_2	23.9604265574786	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGTGTGTGTGTGTTTTT	4644	False	NA	NA	False	NA	NA	NA	122917451	122871485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_122872309_122875495_122875597_122881932_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
ENSMUSG00000029471.14_11	chr5	-	1726	14	NIC	ENSMUSG00000029471.14	novel	3139	14	NA	NA	-5	-2736	combination_of_known_junctions	FALSE	canonical	3	7	junction_12	21.8829592451625	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGGCTTGGAATGTCACT	4645	False	NA	-26	True	AATAAA	-12	NA	122917450	122881417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902017_122902322_122902366_122917314
ENSMUSG00000029471.14_17	chr5	-	1142	5	FSM	ENSMUSG00000029471.14	ENSMUST00000196742.2	1084	5	-62	4	-5	-4	multi-exon	FALSE	canonical	3	71	junction_1	7.3824115301167	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGTGGAGTTAGCAGTG	4645	False	NA	-4	True	AATAAA	-17	NA	122917450	122894342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
ENSMUSG00000029471.14_2	chr5	-	2552	16	FSM	ENSMUSG00000029471.14	ENSMUST00000200109.5	2751	16	-32	231	17	-215	multi-exon	TRUE	canonical	3	10	junction_2	25.1434992702996	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGTTTTTTTTA	4667	False	NA	NA	False	NA	NA	NA	122917428	122871481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_122872309_122875495_122875597_122880162_122880292_122881932_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
ENSMUSG00000029471.14_8	chr5	-	2024	13	ISM	ENSMUSG00000029471.14	ENSMUST00000199830.5	3139	14	20	2736	3	-2736	5prime_fragment	FALSE	canonical	3	28	junction_4	15.8190725251374	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGGCTTGGAATGTCACT	4653	False	NA	-26	True	AATAAA	-12	NA	122917442	122881417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
ENSMUSG00000029472.14_0	chr5	-	2388	17	FSM	ENSMUSG00000029472.14	ENSMUST00000200645.5	2404	17	16	0	1	0	multi-exon	TRUE	canonical	3	855	junction_8	345.39967790952	1262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTCTGAAGTGGGTTT	NA	False	NA	-27	True	AATAAA	-12	NA	122959341	122925793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUSG00000029472.14_1	chr5	-	2427	17	FSM	ENSMUSG00000029472.14	ENSMUST00000086216.9	2760	17	61	272	1	0	multi-exon	FALSE	canonical	3	1165	junction_8	284.126264845403	1810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTCTGAAGTGGGTTT	NA	False	NA	-27	True	AATAAA	-12	NA	122959341	122925793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUSG00000029474.8_0	chr5	+	1941	6	FSM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	146	2353	37	-2353	multi-exon	FALSE	canonical	3	187	junction_1	16.3389106124001	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGCTGTTGTAGTTTAA	660	False	NA	2	True	AATAAA	-9	NA	122988256	123007001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122988362_122999751_122999971_123002049_123002458_123004864_123004970_123005182_123005385_123006099
ENSMUSG00000029474.8_1	chr5	+	1722	5	NIC	ENSMUSG00000029474.8	novel	4440	6	NA	NA	37	-2353	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	85.4005269304587	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGCTGTTGTAGTTTAA	660	False	NA	2	True	AATAAA	-9	NA	122988256	123007001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_122988362_123002049_123002458_123004864_123004970_123005182_123005385_123006099
ENSMUSG00000029474.8_10	chr5	+	2085	1	ISM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	18038	1121	17929	-1121	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAGATTATAAATTTGTT	NA	False	NA	NA	False	ATTAAA	-9	NA	123006148	123008233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_123006100_123008200
ENSMUSG00000029475.18_1	chr5	-	3514	12	FSM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	5	13	5	0	multi-exon	FALSE	canonical	3	252	junction_11	40.2726246663991	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAAAATCTACAC	8599	False	NA	NA	False	TATAAA	-8	NA	123038413	123008743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123038211
ENSMUSG00000029475.18_11	chr5	-	3641	13	NNC	ENSMUSG00000029475.18	novel	4999	23	NA	NA	-30	0	intron_retention	FALSE	non_canonical	0	0	junction_8	128.244558039188	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAAAATCTACAC	NA	False	NA	NA	False	TATAAA	-8	NA	123060200	123008743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020297_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123059967
ENSMUSG00000029475.18_30	chr5	-	1942	5	ISM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	20003	13	733	0	3prime_fragment	FALSE	canonical	3	305	junction_3	29.6057426861749	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAAAATCTACAC	558	False	NA	NA	False	TATAAA	-8	NA	123018415	123008743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235
ENSMUSG00000029475.18_5	chr5	-	3520	12	NNC	ENSMUSG00000029475.18	novel	3532	12	NA	NA	8	0	intron_retention	FALSE	non_canonical	0	0	junction_8	101.881473834764	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAAAATCTACAC	8602	False	NA	NA	False	TATAAA	-8	NA	123038410	123008743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020297_123020464_123020552_123021381_123021526_123026592_123026818_123038211
ENSMUSG00000029475.18_7	chr5	-	3599	13	NIC	ENSMUSG00000029475.18	novel	4999	23	NA	NA	3	0	intron_retention	FALSE	canonical	3	58	junction_12	99.7441170640599	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAAAATCTACAC	NA	False	NA	NA	False	TATAAA	-8	NA	123060167	123008743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123059967
ENSMUSG00000029478.17_10	chr5	-	2717	10	ISM	ENSMUSG00000029478.17	ENSMUST00000125053.8	5672	27	15726	15	-162	-6	3prime_fragment	FALSE	canonical	3	99	junction_9	17.641141588435	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGACAACGTTTCTACTC	2184	False	NA	-13	True	AATATA	-4	NA	125104150	125094231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865
ENSMUSG00000029478.17_16	chr5	-	3004	11	ISM	ENSMUSG00000029478.17	ENSMUST00000125053.8	5672	27	14041	10	-1847	-1	3prime_fragment	FALSE	canonical	3	99	junction_9	17.1767284428671	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACGTTTCTACTCTGCTT	499	False	NA	-8	True	AATATA	-9	NA	125105835	125094226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865_125104282_125105684
ENSMUSG00000029478.17_47	chr5	-	8876	49	NIC	ENSMUSG00000029478.17	novel	8862	48	NA	NA	-4	-6	combination_of_known_junctions	TRUE	canonical	3	65	junction_46	20.0123225927316	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGACAACGTTTCTACTC	NA	False	NA	-13	True	AATATA	-4	NA	125256270	125094231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865_125104282_125105684_125105863_125105945_125106078_125106183_125106334_125107035_125107291_125107749_125107972_125109078_125109434_125110389_125110686_125111047_125111129_125111419_125111561_125113039_125113191_125113884_125113983_125114125_125114231_125114337_125114444_125114924_125115062_125115952_125116118_125118859_125119029_125119808_125119930_125125003_125125599_125126405_125126460_125127974_125128123_125132796_125132940_125142903_125142967_125144839_125145013_125145995_125146142_125156071_125156171_125158193_125158249_125161944_125162124_125163904_125163999_125164857_125165031_125168717_125168785_125175010_125175064_125179706_125179764_125183262_125183377_125186956_125187137_125195680_125195859_125196545_125196674_125201833_125202045_125230670_125230717_125256060
ENSMUSG00000029478.17_5	chr5	-	464	1	ISM	ENSMUSG00000029478.17	ENSMUST00000125053.8	5672	27	25186	10	5594	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACGTTTCTACTCTGCTT	8217	False	NA	-8	True	AATATA	-9	NA	125094690	125094226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_125094200_125094700
ENSMUSG00000029478.17_6	chr5	-	1540	3	ISM	ENSMUSG00000029478.17	ENSMUST00000125053.8	5672	27	22820	10	3228	-1	3prime_fragment	FALSE	canonical	3	128	junction_2	5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACGTTTCTACTCTGCTT	9278	False	NA	-8	True	AATATA	-9	NA	125097056	125094226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_125095413_125095874_125096055_125096882
ENSMUSG00000029478.17_81	chr5	-	3305	22	ISM	ENSMUSG00000029478.17	ENSMUST00000111398.8	8808	48	14	30647	-3	2	5prime_fragment	FALSE	canonical	3	65	junction_19	15.2093478834087	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCAGGGTGTCTTAGTCT	NA	False	NA	NA	False	NA	NA	NA	125256269	125124863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_125125599_125126405_125126460_125127974_125128123_125132796_125132940_125142903_125142967_125144839_125145013_125145995_125146142_125156071_125156171_125158193_125158249_125161944_125162124_125163904_125163999_125164857_125165031_125168717_125168785_125175010_125175064_125179706_125179764_125183262_125183377_125186956_125187137_125195680_125195859_125196545_125196674_125201833_125202045_125230670_125230717_125256060
ENSMUSG00000029480.14_2	chr5	-	4188	27	FSM	ENSMUSG00000029480.14	ENSMUST00000169485.6	4760	27	24	548	24	382	multi-exon	TRUE	canonical	3	122	junction_21	17.4191708985502	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCTGGCTATTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	125511161	125491469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_125492231_125492364_125492463_125492929_125493004_125493087_125493183_125493363_125493502_125493595_125493711_125494485_125494659_125495513_125495631_125495722_125495848_125496024_125496214_125496297_125496405_125498071_125498184_125499182_125499416_125499668_125499746_125500490_125500636_125501688_125501766_125502002_125502099_125502485_125502601_125502735_125502838_125503714_125503829_125504496_125504594_125505377_125505471_125506225_125506375_125506768_125507109_125507882_125507996_125508660_125508831_125510998
ENSMUSG00000029482.5_0	chr5	+	3174	18	FSM	ENSMUSG00000029482.5	ENSMUST00000031445.5	3239	18	59	6	59	-6	multi-exon	FALSE	canonical	3	83	junction_4	14.7470013373196	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTGCAGTACGCGTGTG	NA	False	NA	4	True	AATAAA	-21	NA	125552936	125594468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_125553174_125559893_125559998_125561600_125561722_125566846_125566961_125571970_125572069_125580246_125580362_125580612_125580695_125583212_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909_125589033_125589688_125589803_125590165_125590292_125590982_125591053_125591232_125591292_125591991_125592195_125593279
ENSMUSG00000029484.13_0	chr5	+	1407	13	FSM	ENSMUSG00000029484.13	ENSMUST00000031447.12	1595	13	77	111	21	-5	multi-exon	FALSE	canonical	0	0	junction_1	1.64991582276861	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATGGCTGCCTTTCCTA	NA	False	NA	NA	False	ATTAAA	-17	NA	96941320	96993714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_96941423_96945259_96945313_96958908_96958997_96960700_96960796_96964199_96964314_96968260_96968352_96972745_96972826_96976206_96976264_96976555_96976650_96978251_96978348_96982633_96982693_96986151_96986275_96993359
ENSMUSG00000029486.14_1	chr5	+	1105	9	FSM	ENSMUSG00000029486.14	ENSMUST00000036437.13	3431	9	32	2294	3	-2294	multi-exon	FALSE	canonical	3	666	junction_1	44.6738178355063	426	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGGCTCCTCATGTTTT	NA	False	NA	21	True	TATAAA	-15	NA	96358005	96412274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
ENSMUSG00000029490.5_0	chr5	-	2358	9	NIC	ENSMUSG00000029490.5	novel	2717	10	NA	NA	1	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1.40867845869808	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTGCCTCATAGTCTGC	NA	False	NA	NA	False	AATAAA	-31	NA	108596765	108588918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_108590128_108590889_108591000_108591304_108591463_108591720_108591874_108592336_108592454_108592537_108592676_108593071_108593149_108593316_108593531_108596583
ENSMUSG00000029499.12_1	chr5	-	1033	5	FSM	ENSMUSG00000029499.12	ENSMUST00000031472.12	1041	5	-2	10	-2	3	multi-exon	FALSE	canonical	3	476	junction_4	29.6004645233821	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTAATGGGTGTGGTTTCT	NA	False	NA	-6	True	AATAAA	-18	NA	110434054	110422157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110422495_110425520_110425641_110429062_110429226_110431511_110431620_110433749
ENSMUSG00000029499.12_5	chr5	-	4060	4	NIC	ENSMUSG00000029499.12	novel	1041	5	NA	NA	-2	4	intron_retention	FALSE	canonical	3	476	junction_3	22.7596133534821	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATGGGTGTGGTTTCTC	NA	False	NA	-5	True	AATAAA	-19	NA	110434054	110422156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_110425641_110429062_110429226_110431511_110431620_110433749
ENSMUSG00000029500.17_0	chr5	-	2002	6	FSM	ENSMUSG00000029500.17	ENSMUST00000059229.16	2044	6	35	7	2	-7	multi-exon	FALSE	canonical	3	390	junction_2	111.169420255752	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTTGTTTATTTGTTT	NA	False	NA	-27	True	AATAAA	-11	NA	110417718	110407027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ENSMUSG00000029500.17_1	chr5	-	2008	6	FSM	ENSMUSG00000029500.17	ENSMUST00000112505.9	2098	6	58	32	-1	-7	multi-exon	FALSE	canonical	3	275	junction_2	153.77594090104	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTTGTTTATTTGTTT	NA	False	NA	-27	True	AATAAA	-11	NA	110417721	110407027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110408304_110413377_110413512_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ENSMUSG00000029500.17_4	chr5	-	806	1	ISM	ENSMUSG00000029500.17	ENSMUST00000112505.9	2098	6	9946	32	6068	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTTGTTTATTTGTTT	NA	False	NA	-27	True	AATAAA	-11	NA	110407833	110407027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110407000_110407800
ENSMUSG00000029501.15_0	chr5	+	4052	13	FSM	ENSMUSG00000029501.15	ENSMUST00000197188.5	4077	13	25	0	-12	0	multi-exon	FALSE	canonical	3	178	junction_3	31.2021856428182	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTTAGCACTTGAGATC	NA	False	NA	NA	False	ATTAAA	-13	NA	110378894	110403335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110379290_110382212_110382687_110384138_110384346_110385520_110385718_110385812_110386002_110389794_110389918_110392369_110392437_110397196_110397367_110398566_110398674_110399362_110399554_110400577_110401209_110401648_110401781_110402166
ENSMUSG00000029501.15_2	chr5	+	3937	13	FSM	ENSMUSG00000029501.15	ENSMUST00000031474.11	5215	13	-7	1285	-7	-107	multi-exon	FALSE	canonical	3	39	junction_3	61.1323700396661	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGAAATTGTTCCC	NA	False	NA	NA	False	NA	NA	NA	110378899	110403228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110379290_110382212_110382687_110384138_110384346_110385523_110385718_110385812_110386002_110389794_110389918_110392369_110392437_110397196_110397367_110398566_110398674_110399362_110399554_110400577_110401209_110401648_110401781_110402166
ENSMUSG00000029502.15_0	chr5	+	4636	24	FSM	ENSMUSG00000029502.15	ENSMUST00000112512.8	8132	24	179	3317	1	-48	multi-exon	FALSE	canonical	3	40	junction_3	20.4320997313759	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCTCTGGTGGCTTTCTT	NA	False	NA	32	True	NA	NA	NA	110324745	110371019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110324789_110329468_110329780_110332203_110332354_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
ENSMUSG00000029502.15_1	chr5	+	4757	24	FSM	ENSMUSG00000029502.15	ENSMUST00000031477.9	4805	24	0	48	0	-48	multi-exon	FALSE	canonical	3	55	junction_3	18.4207288514263	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCTCTGGTGGCTTTCTT	NA	False	NA	32	True	NA	NA	NA	110324744	110371019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110324789_110329468_110329780_110332203_110332474_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
ENSMUSG00000029502.15_19	chr5	+	4927	24	NIC	ENSMUSG00000029502.15	novel	4805	24	NA	NA	14	27	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	26.7049976560749	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAACAGAAAAAAACTG	NA	False	NA	107	True	AAGAAA	-38	NA	110324776	110371094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_110324916_110329468_110329780_110332203_110332474_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
ENSMUSG00000029502.15_28	chr5	+	180	1	ISM	ENSMUSG00000029502.15	ENSMUST00000136900.2	3786	3	6690	2774	6650	-840	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	651	False	NA	NA	False	NA	NA	NA	110331412	110331592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110331400_110331600
ENSMUSG00000029502.15_31	chr5	+	3619	20	ISM	ENSMUSG00000029502.15	ENSMUST00000031477.9	4805	24	10862	48	10844	-48	3prime_fragment	FALSE	canonical	3	75	junction_4	14.9451443860614	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCTCTGGTGGCTTTCTT	4845	False	NA	32	True	NA	NA	NA	110335606	110371019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
ENSMUSG00000029502.15_35	chr5	+	2225	14	ISM	ENSMUSG00000029502.15	ENSMUST00000031477.9	4805	24	25915	48	25897	-48	3prime_fragment	FALSE	canonical	3	102	junction_3	9.54466299645914	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCTCTGGTGGCTTTCTT	5880	False	NA	32	True	NA	NA	NA	110350659	110371019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
ENSMUSG00000029502.15_39	chr5	+	4849	7	ISM	ENSMUSG00000029502.15	ENSMUST00000112512.8	8132	24	35080	3	34884	-3	3prime_fragment	FALSE	canonical	3	114	junction_1	5.31245915016974	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTTTTCATAATTCATT	NA	False	NA	NA	False	AATAAA	-12	NA	110359646	110374333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
ENSMUSG00000029502.15_41	chr5	+	2190	1	ISM	ENSMUSG00000029502.15	ENSMUST00000112512.8	8132	24	47576	4	47380	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTTTTCATAATTCAT	NA	False	NA	NA	False	AATAAA	-11	NA	110372142	110374332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110372100_110374300
ENSMUSG00000029502.15_7	chr5	+	4758	24	NIC	ENSMUSG00000029502.15	novel	8132	24	NA	NA	6	-48	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	28.0402761906312	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCTCTGGTGGCTTTCTT	NA	False	NA	32	True	NA	NA	NA	110324750	110371019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_110324916_110329468_110329780_110332203_110332354_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
ENSMUSG00000029503.17_0	chr5	-	1861	11	FSM	ENSMUSG00000029503.17	ENSMUST00000195985.5	2096	11	231	4	-5	-3	multi-exon	FALSE	canonical	1	1	junction_9	1.9723082923316	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTCTGGTCTCAATTCT	NA	False	NA	NA	False	AATAAA	-10	NA	110490847	110487681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110488449_110488533_110488600_110488721_110488816_110488966_110489098_110489416_110489556_110489639_110489721_110489870_110489968_110490043_110490120_110490198_110490271_110490365_110490502_110490645
ENSMUSG00000029504.6_1	chr5	+	2530	15	FSM	ENSMUSG00000029504.6	ENSMUST00000031478.6	4846	15	16	2300	16	325	multi-exon	TRUE	canonical	3	94	junction_7	18.2382195693885	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACAAATTCCCGATAGCT	NA	False	NA	5	True	AATAAA	-16	NA	110801332	110806062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110801655_110801743_110801878_110802333_110802485_110802734_110802881_110802957_110803030_110803172_110803280_110803430_110803540_110803625_110803772_110803905_110804099_110804196_110804313_110804390_110804508_110804681_110804784_110804953_110805018_110805116_110805252_110805446
ENSMUSG00000029505.18_14	chr5	-	4306	19	ISM	ENSMUSG00000029505.18	ENSMUST00000041558.15	10608	52	85890	6	7530	-1	3prime_fragment	FALSE	canonical	3	85	junction_11	15.9761589351442	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTCTTGTTCTGTCTTA	7268	False	NA	-6	True	AATAAA	-13	NA	110832503	110812244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110813941_110814405_110814484_110815333_110815481_110815928_110816057_110816415_110816612_110818740_110818963_110820974_110821160_110821272_110821481_110822726_110822837_110822909_110822956_110824316_110824614_110824725_110824805_110827829_110827887_110828007_110828145_110830664_110830839_110831001_110831244_110831711_110831866_110831952_110831998_110832398
ENSMUSG00000029505.18_15	chr5	-	4536	21	ISM	ENSMUSG00000029505.18	ENSMUST00000041558.15	10608	52	85058	8	6698	-3	3prime_fragment	FALSE	canonical	3	78	junction_19	16.8768332337557	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTTTCTTGTTCTGTCT	6436	False	NA	-8	True	AATAAA	-11	NA	110833335	110812246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110813941_110814405_110814484_110815333_110815481_110815928_110816057_110816415_110816612_110818740_110818963_110820974_110821160_110821272_110821481_110822726_110822837_110822909_110822956_110824316_110824614_110824725_110824805_110827829_110827887_110828007_110828145_110830664_110830839_110831001_110831244_110831711_110831866_110831952_110831998_110832398_110832534_110832942_110833027_110833217
ENSMUSG00000029505.18_2	chr5	-	3229	11	ISM	ENSMUSG00000029505.18	ENSMUST00000041558.15	10608	52	93864	6	-7856	-1	3prime_fragment	FALSE	canonical	3	96	junction_6	11.838918869559	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTCTTGTTCTGTCTTA	NA	False	NA	-6	True	AATAAA	-13	NA	110824529	110812244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110813941_110814405_110814484_110815333_110815481_110815928_110816057_110816415_110816612_110818740_110818963_110820974_110821160_110821272_110821481_110822726_110822837_110822909_110822956_110824316
ENSMUSG00000029505.18_22	chr5	-	5541	27	ISM	ENSMUSG00000029505.18	ENSMUST00000041558.15	10608	52	75119	6	-3241	-1	3prime_fragment	FALSE	canonical	3	63	junction_25	19.8431721075523	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTCTTGTTCTGTCTTA	NA	False	NA	-6	True	AATAAA	-13	NA	110843274	110812244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110813941_110814405_110814484_110815333_110815481_110815928_110816057_110816415_110816612_110818740_110818963_110820974_110821160_110821272_110821481_110822726_110822837_110822909_110822956_110824316_110824614_110824725_110824805_110827829_110827887_110828007_110828145_110830664_110830839_110831001_110831244_110831711_110831866_110831952_110831998_110832398_110832534_110832942_110833027_110833217_110833377_110835663_110835808_110836057_110836170_110839484_110839682_110841031_110841202_110841285_110841489_110843138
ENSMUSG00000029505.18_30	chr5	-	10915	53	NIC	ENSMUSG00000029505.18	novel	10608	52	NA	NA	-14	-3	combination_of_known_junctions	FALSE	canonical	3	45	junction_41	25.0433942913722	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTTTCTTGTTCTGTCT	NA	False	NA	-8	True	AATAAA	-11	NA	110918465	110812246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_110813941_110814405_110814484_110815333_110815481_110815928_110816057_110816415_110816612_110818740_110818963_110820974_110821160_110821272_110821481_110822726_110822837_110822909_110822956_110824316_110824614_110824725_110824805_110827829_110827887_110828007_110828145_110830664_110830839_110831001_110831244_110831711_110831866_110831952_110831998_110832398_110832534_110832942_110833027_110833217_110833377_110835663_110835808_110836057_110836170_110839484_110839682_110841031_110841202_110841285_110841489_110843138_110843405_110843818_110843914_110845074_110845234_110846617_110846783_110848387_110848631_110849486_110849657_110851317_110851485_110852747_110852935_110855794_110855932_110856028_110856204_110856639_110856810_110858896_110859034_110866952_110867131_110867298_110867490_110868601_110868710_110872287_110872378_110874756_110874815_110875394_110875445_110877099_110877179_110877688_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
ENSMUSG00000029505.18_6	chr5	-	1032	1	ISM	ENSMUSG00000029505.18	ENSMUST00000041558.15	10608	52	105117	6	2778	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTCTTGTTCTGTCTTA	NA	False	NA	-6	True	AATAAA	-13	NA	110813276	110812244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110812200_110813300
ENSMUSG00000029505.18_80	chr5	-	2279	5	FSM	ENSMUSG00000029505.18	ENSMUST00000146458.9	3673	5	-7	1401	-7	-1003	multi-exon	FALSE	canonical	3	52	junction_3	2.77263412660235	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACCATTATTATTGTTG	NA	False	NA	NA	False	ATTAAA	-7	NA	110918458	110886938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
ENSMUSG00000029507.17_0	chr5	-	1790	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031483.15	1814	6	19	5	14	-4	multi-exon	FALSE	canonical	3	282	junction_5	100.055184773204	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTATTCTTTGCCTATTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	110928443	110921537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928105
ENSMUSG00000029507.17_1	chr5	-	1492	6	FSM	ENSMUSG00000029507.17	ENSMUST00000170468.8	1510	6	13	5	-6	-5	multi-exon	FALSE	canonical	3	83	junction_5	177.715052823333	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTATTCTTTGCCTATTT	NA	False	NA	-5	True	ATTAAA	-16	NA	110928468	110921538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928427
ENSMUSG00000029507.17_20	chr5	-	1650	5	NIC	ENSMUSG00000029507.17	novel	1814	6	NA	NA	14	-6	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	214.321020900891	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTATTCTTTGCCTATT	NA	False	NA	-6	True	ATTAAA	-15	NA	110928443	110921539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_110921846_110922387_110923080_110923401_110923505_110927552_110927764_110928105
ENSMUSG00000029507.17_3	chr5	-	1845	7	FSM	ENSMUSG00000029507.17	ENSMUST00000086643.12	1868	7	18	5	13	-4	multi-exon	FALSE	canonical	3	62	junction_4	212.004454879818	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTATTCTTTGCCTATTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	110928444	110921537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928105
ENSMUSG00000029507.17_7	chr5	-	2112	5	ISM	ENSMUSG00000029507.17	ENSMUST00000031483.15	1814	6	39	5	34	-4	intron_retention	FALSE	canonical	3	492	junction_3	32.6448694284416	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTATTCTTTGCCTATTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	110928423	110921537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552
ENSMUSG00000029510.16_1	chr5	-	2575	10	FSM	ENSMUSG00000029510.16	ENSMUST00000161827.8	2586	10	6	5	6	0	multi-exon	FALSE	canonical	3	16	junction_6	3.67507453523138	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGTATGGCTCTCTGTGT	1727	False	NA	-5	True	AATAAA	-15	NA	138278261	138271921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138272832_138273716_138273887_138273968_138274109_138274190_138274338_138274469_138274601_138274845_138275009_138275668_138275750_138276476_138276800_138277100_138277260_138277910
ENSMUSG00000029510.16_3	chr5	-	3795	8	NIC	ENSMUSG00000029510.16	novel	2586	10	NA	NA	-3	0	intron_retention	FALSE	canonical	2	2	junction_7	8.24126005820341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATGGCTCTCTGTGTGTG	1738	False	NA	-2	True	AATAAA	-18	NA	138278250	138271918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_138272832_138273716_138273887_138273968_138274109_138274190_138274338_138274469_138274601_138274845_138275750_138276476_138276717_138277100
ENSMUSG00000029510.16_4	chr5	-	2442	10	NIC	ENSMUSG00000029510.16	novel	2586	10	NA	NA	15	-1	combination_of_known_junctions	FALSE	canonical	2	2	junction_8	7.64166616179973	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTATGGCTCTCTGTGTGT	1779	False	NA	-3	True	AATAAA	-17	NA	138278209	138271919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_138272832_138273716_138273887_138273968_138274109_138274190_138274338_138274469_138274601_138274845_138275009_138275668_138275750_138276476_138276717_138277100_138277260_138277910
ENSMUSG00000029510.16_5	chr5	-	3439	9	NIC	ENSMUSG00000029510.16	novel	2586	10	NA	NA	6	-1	intron_retention	FALSE	canonical	3	16	junction_5	3.63145976158349	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTATGGCTCTCTGTGTGT	1750	False	NA	-3	True	AATAAA	-17	NA	138278238	138271919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_138273887_138273968_138274109_138274190_138274338_138274469_138274601_138274845_138275009_138275668_138275750_138276476_138276800_138277100_138277260_138277910
ENSMUSG00000029510.16_6	chr5	-	3932	7	NIC	ENSMUSG00000029510.16	novel	3281	8	NA	NA	6	-3	intron_retention	FALSE	canonical	2	2	junction_6	8.89600409672168	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACGTGTATGGCTCTCTG	1727	False	NA	-8	True	AATAAA	-12	NA	138278261	138271924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_138272832_138273716_138273887_138273968_138274109_138274190_138274601_138274845_138275750_138276476_138276717_138277100
ENSMUSG00000029512.12_1	chr5	-	5174	28	FSM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	35	4	-9	-4	multi-exon	TRUE	canonical	3	530	junction_12	186.450389110485	852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTGGTGTCAATTTC	NA	False	NA	-6	True	AATAAA	-11	NA	110957928	110932357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938803_110938917_110939064_110939466_110939593_110939967_110940058_110940262_110940324_110940831_110940980_110941680_110941770_110942058_110942110_110942450_110942534_110942612_110942672_110943597_110943700_110944021_110944096_110944192_110944367_110946747_110946785_110946989_110947023_110956870_110956913_110956992_110957086_110957479
ENSMUSG00000029512.12_2	chr5	-	1351	1	ISM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	24258	1	1382	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGTCAATTTCATC	NA	False	NA	-3	True	AATAAA	-14	NA	110933705	110932354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110932400_110933700
ENSMUSG00000029512.12_4	chr5	-	5193	28	FSM	ENSMUSG00000029512.12	ENSMUST00000200299.2	3581	28	-10	-1602	-10	-4	multi-exon	FALSE	canonical	3	128	junction_11	217.248929557064	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTGGTGTCAATTTC	NA	False	NA	-6	True	AATAAA	-11	NA	110957929	110932357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938821_110938917_110939064_110939466_110939593_110939967_110940058_110940262_110940324_110940831_110940980_110941680_110941770_110942058_110942110_110942450_110942534_110942612_110942672_110943597_110943700_110944021_110944096_110944192_110944367_110946747_110946785_110946989_110947023_110956870_110956913_110956992_110957086_110957479
ENSMUSG00000029513.15_0	chr5	-	1999	7	FSM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	73	17	8	-13	multi-exon	FALSE	canonical	3	213	junction_6	10.0788557551606	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTACTGGAGTAACTT	NA	False	NA	-17	True	AATAAA	-8	NA	116162448	116151661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149
ENSMUSG00000029513.15_10	chr5	-	1710	6	ISM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	2814	9	-2	-5	3prime_fragment	FALSE	canonical	3	214	junction_3	9.76933979345585	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGTAACTTTTGACTCG	NA	False	NA	-9	True	AATAAA	-16	NA	116159707	116151653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541
ENSMUSG00000029513.15_2	chr5	-	1947	8	FSM	ENSMUSG00000029513.15	ENSMUST00000111999.8	2026	8	66	13	9	-13	multi-exon	FALSE	canonical	3	151	junction_7	27.0313499024932	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTACTGGAGTAACTT	NA	False	NA	-17	True	AATAAA	-8	NA	116162501	116151661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149_116162319_116162423
ENSMUSG00000029516.20_18	chr5	+	6497	45	ISM	ENSMUSG00000029516.20	ENSMUST00000051704.15	9514	47	703	10455	-24	-6	5prime_fragment	FALSE	canonical	3	24	junction_7	7.2177968182189	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTATTTATTTTTGTTT	9550	False	NA	NA	False	AATAAA	-10	NA	115984405	116136551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452_116063559_116064517_116064662_116065894_116066015_116071456_116071628_116071879_116071931_116072637_116072692_116074787_116074929_116076737_116076864_116079895_116079992_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119753_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
ENSMUSG00000029516.20_24	chr5	+	4278	28	ISM	ENSMUSG00000029516.20	ENSMUST00000147479.8	5016	38	15746	7871	-3465	-1	internal_fragment	FALSE	canonical	3	30	junction_21	5.28553685663299	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTTTGTTTTATTG	NA	False	NA	NA	False	AATAAA	-15	NA	116079890	116136556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_116079992_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119753_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
ENSMUSG00000029516.20_26	chr5	+	4332	28	NIC	ENSMUSG00000029516.20	novel	4398	28	NA	NA	19	-2	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	6.95488104645726	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTATTTTTGTTTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	116083374	116136555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_116083531_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119753_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
ENSMUSG00000029516.20_3	chr5	+	2134	11	NIC	ENSMUSG00000029516.20	novel	2335	10	NA	NA	-9	406	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	12.3971770980332	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8472	False	NA	NA	False	ATTAAA	-29	NA	115983327	116064174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_115983361_115984342_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
ENSMUSG00000029516.20_33	chr5	+	3365	22	ISM	ENSMUSG00000029516.20	ENSMUST00000147479.8	5016	38	41961	7870	22	0	internal_fragment	FALSE	canonical	3	30	junction_15	5.77821383318762	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTTGTTTTATTGA	NA	False	NA	NA	False	AATAAA	-16	NA	116106105	116136557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119753_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
ENSMUSG00000029516.20_35	chr5	+	3085	20	ISM	ENSMUSG00000029516.20	ENSMUST00000147479.8	5016	38	45198	7876	3259	-6	internal_fragment	FALSE	canonical	3	30	junction_13	5.91022401626518	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTATTTATTTTTGTTT	NA	False	NA	NA	False	AATAAA	-10	NA	116109342	116136551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119753_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
ENSMUSG00000029516.20_49	chr5	+	2036	10	FSM	ENSMUSG00000029516.20	ENSMUST00000146387.8	2335	10	703	-404	-24	404	multi-exon	FALSE	canonical	3	24	junction_7	10.8092324506803	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	9550	False	NA	NA	False	ATTAAA	-27	NA	115984405	116064172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
ENSMUSG00000029516.20_5	chr5	+	6525	46	NIC	ENSMUSG00000029516.20	novel	9514	47	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	7.55215609798917	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTTGTTTTATTGA	8483	False	NA	NA	False	AATAAA	-16	NA	115983338	116136557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_115983361_115984405_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452_116063559_116064517_116064662_116065894_116066015_116071456_116071628_116071879_116071931_116072637_116072692_116074787_116074929_116076737_116076864_116079895_116079992_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119753_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
ENSMUSG00000029516.20_6	chr5	+	6590	46	NIC	ENSMUSG00000029516.20	novel	9514	47	NA	NA	-6	-6	combination_of_known_junctions	TRUE	canonical	3	13	junction_1	7.94953217041073	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTATTTATTTTTGTTT	8475	False	NA	NA	False	AATAAA	-10	NA	115983330	116136551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_115983361_115984342_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452_116063559_116064517_116064662_116065894_116066015_116071456_116071628_116071879_116071931_116072637_116072692_116074787_116074929_116076737_116076864_116079895_116079992_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119753_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
ENSMUSG00000029518.16_0	chr5	+	2225	6	FSM	ENSMUSG00000029518.16	ENSMUST00000031492.15	2820	6	16	579	16	-579	multi-exon	FALSE	canonical	3	206	junction_5	16.4438438328756	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTCTCTCCACTTGTCC	NA	False	NA	16	True	AATAAA	-18	NA	115769982	115785216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115770258_115775774_115775826_115778138_115778263_115781426_115781552_115781633_115781759_115783691
ENSMUSG00000029518.16_1	chr5	+	2225	6	FSM	ENSMUSG00000029518.16	ENSMUST00000138885.2	966	6	-221	-1038	12	-579	multi-exon	FALSE	canonical	2	12	junction_2	85.478418328839	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTCTCTCCACTTGTCC	NA	False	NA	16	True	AATAAA	-18	NA	115769978	115785216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115770258_115775774_115775826_115778142_115778263_115781426_115781552_115781633_115781759_115783691
ENSMUSG00000029518.16_12	chr5	+	1179	1	ISM	ENSMUSG00000029518.16	ENSMUST00000031492.15	2820	6	14071	579	13838	-579	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTCTCTCCACTTGTCC	NA	False	NA	16	True	AATAAA	-18	NA	115784037	115785216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_115784000_115785200
ENSMUSG00000029521.8_1	chr5	+	2143	14	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	5	0	combination_of_known_splicesites	TRUE	canonical	3	52	junction_11	68.5178679240099	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAATGTTAGTAGTTTG	9204	False	NA	19	True	NA	NA	NA	110987870	111021999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111015873_111015960_111019892_111019974_111021345
ENSMUSG00000029521.8_15	chr5	+	924	5	ISM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	6	24280	6	-28	5prime_fragment	FALSE	canonical	3	120	junction_1	80.3632378640881	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTAGTGTTGGGATAA	9205	False	NA	NA	False	AATAAA	-15	NA	110987871	110997731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461
ENSMUSG00000029521.8_2	chr5	+	2258	15	FSM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	6	12	6	0	multi-exon	FALSE	canonical	3	120	junction_1	48.9833895211386	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAATGTTAGTAGTTTG	9205	False	NA	19	True	NA	NA	NA	110987871	111021999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ENSMUSG00000029521.8_3	chr5	+	2388	16	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	67.6591457232502	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAATGTTAGTAGTTTG	9205	False	NA	19	True	NA	NA	NA	110987871	111021999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ENSMUSG00000029521.8_31	chr5	+	2165	14	ISM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	1256	12	-198	0	3prime_fragment	FALSE	canonical	3	192	junction_4	41.1592376051438	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAATGTTAGTAGTTTG	NA	False	NA	19	True	NA	NA	NA	110989121	111021999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ENSMUSG00000029521.8_4	chr5	+	2272	15	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	3	52	junction_12	80.9591733845031	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAATGTTAGTAGTTTG	9205	False	NA	19	True	NA	NA	NA	110987871	111021999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111015873_111015960_111019892_111019974_111021345
ENSMUSG00000029521.8_7	chr5	+	1734	4	ISM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	7	24287	7	-35	intron_retention	FALSE	canonical	3	120	junction_1	91.2249965744039	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTATAAATTTTAGTGTT	9206	False	NA	NA	False	AATAAA	-8	NA	110987872	110997724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495
ENSMUSG00000029522.13_1	chr5	+	626	4	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1153	-6	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_2	947.073738769409	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGGTTTTGGTGATTGT	NA	False	NA	24	True	AATAAA	-15	NA	115603167	115612775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_115603279_115604200_115604380_115610051_115610180_115612567
ENSMUSG00000029522.13_2	chr5	+	784	5	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1153	6	at_least_one_novel_splicesite	FALSE	canonical	3	2118	junction_4	157.856540884437	596	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCTGGTTTTGGTGATT	NA	False	NA	22	True	AATAAA	-13	NA	115603167	115612773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_115603279_115604200_115604380_115608840_115609001_115610051_115610180_115612567
ENSMUSG00000029522.13_4	chr5	+	781	5	NNC	ENSMUSG00000029522.13	novel	387	4	NA	NA	-1153	6	at_least_one_novel_splicesite	FALSE	canonical	3	175	junction_2	919.936546724827	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCTGGTTTTGGTGATT	NA	False	NA	22	True	AATAAA	-13	NA	115603167	115612773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_115603279_115604200_115604380_115608843_115609001_115610051_115610180_115612567
ENSMUSG00000029524.17_1	chr5	-	1434	5	FSM	ENSMUSG00000029524.17	ENSMUST00000112066.2	1794	5	356	4	-3	-1	multi-exon	FALSE	canonical	3	34	junction_3	4.96865172858795	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACAAATGTGTGGACTGT	9376	False	NA	NA	False	AATAAA	-15	NA	115622428	115616072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115616468_115617660_115617872_115618289_115618585_115620682_115621178_115622390
ENSMUSG00000029524.17_11	chr5	-	1215	4	ISM	ENSMUSG00000029524.17	ENSMUST00000112067.8	1645	5	1354	10	-87	-7	3prime_fragment	FALSE	canonical	3	34	junction_3	4.54606056566195	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGCATAACAAATGTGTG	NA	False	NA	NA	False	AATAAA	-9	NA	115621002	115616078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_115616468_115617660_115617872_115618289_115618585_115620682
ENSMUSG00000029524.17_16	chr5	-	1838	4	NIC	ENSMUSG00000029524.17	novel	1794	5	NA	NA	5	-7	intron_retention	FALSE	canonical	3	34	junction_2	5.31245915016974	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGCATAACAAATGTGTG	9384	False	NA	NA	False	AATAAA	-9	NA	115622420	115616078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_115616468_115617660_115618585_115620682_115621178_115622390
ENSMUSG00000029524.17_4	chr5	-	157	1	ISM	ENSMUSG00000029524.17	ENSMUST00000112067.8	1645	5	6128	3	1769	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAAATGTGTGGACTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	115616228	115616071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_115616100_115616200
ENSMUSG00000029524.17_9	chr5	-	1587	3	NIC	ENSMUSG00000029524.17	novel	1645	5	NA	NA	-35	-1	intron_retention	FALSE	canonical	3	34	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACAAATGTGTGGACTGT	NA	False	NA	NA	False	AATAAA	-15	NA	115620950	115616072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_115616468_115617660_115618585_115620682
ENSMUSG00000029528.20_0	chr5	+	3672	11	FSM	ENSMUSG00000029528.20	ENSMUST00000067268.15	3706	11	28	6	-7	-1	multi-exon	FALSE	canonical	3	245	junction_6	21.5722043379901	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGAGCTGATGTTATTTC	NA	False	NA	13	True	AATAAA	-17	NA	115644762	115694040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115644928_115682401_115682629_115682939_115683056_115683430_115683568_115683662_115683865_115684871_115685008_115689909_115690081_115690162_115690337_115690822_115690905_115691036_115691186_115691927
ENSMUSG00000029528.20_1	chr5	+	3773	12	FSM	ENSMUSG00000029528.20	ENSMUST00000086523.7	2667	12	-103	-1003	-6	-1	multi-exon	FALSE	canonical	3	21	junction_6	97.41612200476	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGAGCTGATGTTATTTC	NA	False	NA	13	True	AATAAA	-17	NA	115644763	115694040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115644928_115682401_115682629_115682939_115683056_115683430_115683568_115683662_115683865_115684871_115685008_115689546_115689649_115689909_115690081_115690162_115690337_115690822_115690905_115691036_115691186_115691927
ENSMUSG00000029534.18_0	chr6	+	2032	15	FSM	ENSMUSG00000029534.18	ENSMUST00000052113.12	2046	15	67	-53	67	-1	multi-exon	FALSE	canonical	2	14	junction_6	6.64093674238255	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGAACCTGTGTCGTCTTC	26	False	NA	NA	False	AATAAA	-22	NA	17694097	17943018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_17694362_17819248_17819332_17834615_17834776_17844907_17844963_17846197_17846314_17848002_17848079_17852256_17852412_17854929_17855028_17886002_17886118_17904895_17904969_17906406_17906510_17921987_17922139_17930764_17930858_17934117_17934258_17942668
ENSMUSG00000029534.18_1	chr6	+	2146	16	FSM	ENSMUSG00000029534.18	ENSMUST00000081635.13	2115	16	23	-54	23	0	multi-exon	FALSE	canonical	2	9	junction_7	7.93473376995095	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAACCTGTGTCGTCTTCT	-18	True	NA	NA	False	AATAAA	-23	NA	17694053	17943019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_17694362_17819248_17819332_17834615_17834776_17844907_17844963_17846197_17846314_17848002_17848079_17850355_17850425_17852256_17852412_17854929_17855028_17886002_17886118_17904895_17904969_17906406_17906510_17921987_17922139_17930764_17930858_17934117_17934258_17942668
ENSMUSG00000029535.5_0	chr5	+	1046	2	FSM	ENSMUSG00000029535.5	ENSMUST00000031508.5	1088	2	25	17	25	-17	multi-exon	FALSE	canonical	3	209	junction_1	0	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTTGCTCCCAAAACCC	2439	False	NA	27	True	AATAAA	-19	NA	115479308	115481611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115479477_115480733
ENSMUSG00000029536.9_0	chr5	-	1768	3	FSM	ENSMUSG00000029536.9	ENSMUST00000139167.3	1797	3	18	11	18	-11	multi-exon	FALSE	canonical	3	122	junction_1	3.5	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGAGTCTGCCTTTGGTGC	9727	False	NA	-12	True	NA	NA	NA	115479219	115471308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115472654_115473525_115473630_115478900
ENSMUSG00000029536.9_1	chr5	-	1364	1	Genic_Genomic	ENSMUSG00000029536.9	novel	NA	NA	NA	NA	6947	371	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAAAATAAAATA	7357	False	NA	NA	False	NA	NA	NA	115472290	115470926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_-_115470900_115472300
ENSMUSG00000029538.15_0	chr5	+	1157	4	FSM	ENSMUSG00000029538.15	ENSMUST00000031513.14	1162	4	2	3	2	-3	multi-exon	FALSE	canonical	3	1733	junction_1	69.0700127889569	1001	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGGCGTGCAGTTGTCT	136	False	NA	36	True	AATATA	-15	NA	115465237	115471136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115465559_115468556_115468718_115470175_115470349_115470634
ENSMUSG00000029544.17_0	chr5	-	1569	6	FSM	ENSMUSG00000029544.17	ENSMUST00000112113.8	1621	6	43	9	43	-9	multi-exon	FALSE	canonical	3	43	junction_5	70.6693710174358	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGACAGAGAGGGTGGT	8806	False	NA	-10	True	AATAAA	-11	NA	115332397	115306756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115331712
ENSMUSG00000029544.17_12	chr5	-	1128	6	ISM	ENSMUSG00000029544.17	ENSMUST00000112109.8	1071	7	384	-13	221	-12	3prime_fragment	FALSE	canonical	3	48	junction_5	68.8894767000011	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAGAATGACAGAGAGGGT	7903	False	NA	-13	True	AATAAA	-8	NA	115319097	115306759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318850
ENSMUSG00000029544.17_2	chr5	-	1247	7	FSM	ENSMUSG00000029544.17	ENSMUST00000031519.14	1370	7	110	13	-77	12	multi-exon	FALSE	canonical	3	35	junction_6	80.5826008239716	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGAGAATGACAGAGAGGG	9975	False	NA	-14	True	AATAAA	-7	NA	115324257	115306760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318850_115319031_115324070
ENSMUSG00000029544.17_5	chr5	-	1214	7	FSM	ENSMUSG00000029544.17	ENSMUST00000145197.9	840	7	-117	-257	-52	0	multi-exon	FALSE	canonical	3	15	junction_5	87.9837421850701	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAAAAACCGAGAA	10000	False	NA	-26	True	NA	NA	NA	115324232	115306772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318846_115319031_115324070
ENSMUSG00000029544.17_6	chr5	-	3112	5	ISM	ENSMUSG00000029544.17	ENSMUST00000112109.8	1071	7	2924	-16	2761	-9	3prime_fragment	FALSE	canonical	3	159	junction_4	35.5765020765111	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGACAGAGAGGGTGGT	NA	False	NA	-10	True	AATAAA	-11	NA	115316557	115306756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298
ENSMUSG00000029544.17_7	chr5	-	801	3	ISM	ENSMUSG00000029544.17	ENSMUST00000112109.8	1071	7	8106	-16	7943	-9	3prime_fragment	FALSE	canonical	3	234	junction_2	2	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGACAGAGAGGGTGGT	2391	False	NA	-10	True	AATAAA	-11	NA	115311375	115306756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_115307208_115310817_115310966_115311173
ENSMUSG00000029544.17_8	chr5	-	5503	6	ISM	ENSMUSG00000029544.17	ENSMUST00000145197.9	840	7	646	-269	646	12	3prime_fragment	FALSE	canonical	3	15	junction_5	80.8272231367625	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGAGAATGACAGAGAGGG	3531	False	NA	-14	True	AATAAA	-7	NA	115323469	115306760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318846
ENSMUSG00000029545.14_0	chr5	-	1826	10	FSM	ENSMUSG00000029545.14	ENSMUST00000031524.11	1870	10	43	1	7	-1	multi-exon	FALSE	canonical	3	425	junction_3	13.7822573362984	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTGCCTGTGTCTGTCT	9817	False	NA	-5	True	AATAAA	-17	NA	115257362	115248358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115257283
ENSMUSG00000029545.14_10	chr5	-	1914	9	NIC	ENSMUSG00000029545.14	novel	1870	10	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	425	junction_3	14.5811307860536	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCTGTGCCTGTGTCTGT	9809	False	NA	-7	True	AATAAA	-15	NA	115257370	115248360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115257283
ENSMUSG00000029547.11_1	chr5	-	7086	47	FSM	ENSMUSG00000029547.11	ENSMUST00000072607.9	7102	47	13	3	13	0	multi-exon	FALSE	canonical	0	0	junction_11	49.3038493955329	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTGTGGTGTCCTGTGT	NA	False	NA	-12	True	AATGAA	-16	NA	139761415	139737039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739215_139739329_139739828_139739957_139740661_139740855_139740931_139741066_139741631_139741756_139741889_139742117_139742198_139742287_139742815_139742947_139743342_139743467_139743543_139743731_139743849_139743991_139744184_139744345_139744890_139745146_139745501_139745627_139745837_139745937_139746408_139746556_139747037_139747200_139747777_139747890_139748082_139748251_139748368_139748474_139748562_139748743_139749759_139749910_139749982_139750163_139750422_139750553_139750798_139750997_139751991_139752053_139752184_139752277_139753157_139753255_139753475_139753634_139754173_139754252_139754618_139754740_139755053_139755163_139755817_139755995_139756804_139756947_139757044_139757191_139757291_139757479_139757570_139757677_139757771_139757932_139758110_139758249_139758352_139758550_139760042_139760334_139761086
ENSMUSG00000029547.11_17	chr5	-	4413	30	ISM	ENSMUSG00000029547.11	ENSMUST00000200393.5	7070	47	10481	0	-2662	0	3prime_fragment	FALSE	canonical	0	0	junction_11	54.5604858040796	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTGTGGTGTCCTGTGT	NA	False	NA	-12	True	AATGAA	-16	NA	139750912	139737039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739215_139739329_139739828_139739957_139740661_139740855_139740931_139741066_139741631_139741756_139741889_139742117_139742198_139742287_139742815_139742947_139743342_139743467_139743543_139743731_139743849_139743991_139744184_139744345_139744890_139745146_139745501_139745627_139745837_139745937_139746408_139746556_139747037_139747200_139747777_139747890_139748082_139748251_139748368_139748474_139748562_139748743_139749759_139749910_139749982_139750163_139750422_139750553_139750798
ENSMUSG00000029547.11_31	chr5	-	3773	26	ISM	ENSMUSG00000029547.11	ENSMUST00000200393.5	7070	47	12717	0	-426	0	3prime_fragment	TRUE	canonical	0	0	junction_11	56.0867043068141	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTGTGGTGTCCTGTGT	NA	False	NA	-12	True	AATGAA	-16	NA	139748676	139737039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739215_139739329_139739828_139739957_139740661_139740855_139740931_139741066_139741631_139741756_139741889_139742117_139742198_139742287_139742815_139742947_139743342_139743467_139743543_139743731_139743849_139743991_139744184_139744345_139744890_139745146_139745501_139745627_139745837_139745937_139746408_139746556_139747037_139747200_139747777_139747890_139748082_139748251_139748368_139748474_139748562
ENSMUSG00000029547.11_36	chr5	-	7092	47	FSM	ENSMUSG00000029547.11	ENSMUST00000200393.5	7070	47	-22	0	13	0	multi-exon	FALSE	non_canonical	0	0	junction_11	54.456278746312	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTGTGGTGTCCTGTGT	NA	False	NA	-12	True	AATGAA	-16	NA	139761415	139737039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739215_139739329_139739828_139739957_139740661_139740855_139740931_139741066_139741631_139741756_139741889_139742117_139742198_139742287_139742815_139742947_139743342_139743467_139743543_139743731_139743849_139743991_139744184_139744345_139744890_139745146_139745501_139745627_139745837_139745937_139746408_139746556_139747037_139747200_139747777_139747890_139748082_139748251_139748368_139748474_139748562_139748743_139749759_139749910_139749982_139750163_139750422_139750553_139750798_139750997_139751991_139752053_139752184_139752277_139753157_139753255_139753475_139753634_139754173_139754252_139754618_139754740_139755053_139755163_139755817_139755995_139756804_139756947_139757044_139757191_139757291_139757485_139757570_139757677_139757771_139757932_139758110_139758249_139758352_139758550_139760042_139760334_139761086
ENSMUSG00000029547.11_46	chr5	-	3925	27	ISM	ENSMUSG00000029547.11	ENSMUST00000200393.5	7070	47	11548	0	-1595	0	3prime_fragment	FALSE	canonical	0	0	junction_11	55.5339466521985	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTGTGGTGTCCTGTGT	NA	False	NA	-12	True	AATGAA	-16	NA	139749845	139737039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739215_139739329_139739828_139739957_139740661_139740855_139740931_139741066_139741631_139741756_139741889_139742117_139742198_139742287_139742815_139742947_139743342_139743467_139743543_139743731_139743849_139743991_139744184_139744345_139744890_139745146_139745501_139745627_139745837_139745937_139746408_139746556_139747037_139747200_139747777_139747890_139748082_139748251_139748368_139748474_139748562_139748743_139749759
ENSMUSG00000029550.12_0	chr5	+	3190	11	FSM	ENSMUSG00000029550.12	ENSMUST00000031530.9	3204	11	10	4	1	-4	multi-exon	FALSE	canonical	3	647	junction_3	39.4320935279881	1403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGCTTTGGTCCTGACTT	1493	False	NA	24	True	AATAAA	-12	NA	115149205	115236845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115149675_115199620_115199699_115212873_115212963_115220279_115220400_115221483_115221563_115222911_115223025_115226348_115226456_115226881_115227046_115233109_115233310_115233904_115234015_115235184
ENSMUSG00000029551.14_0	chr5	-	762	3	FSM	ENSMUSG00000029551.14	ENSMUST00000182602.2	733	3	-32	3	0	-3	multi-exon	FALSE	canonical	3	69	junction_2	75.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGGCTGGCCTTCTCA	7323	False	NA	-36	True	AATAAA	-7	NA	139812630	139809370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139809829_139811882_139812120_139812563
ENSMUSG00000029551.14_1	chr5	-	850	3	FSM	ENSMUSG00000029551.14	ENSMUST00000031531.14	883	3	11	22	1	-1	multi-exon	FALSE	canonical	3	166	junction_2	27	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGCTGGCCTTCTCAGT	7324	False	NA	-34	True	AATAAA	-9	NA	139812629	139809368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139809829_139811882_139812120_139812476
ENSMUSG00000029551.14_2	chr5	-	355	1	ISM	ENSMUSG00000029551.14	ENSMUST00000031531.14	883	3	2917	22	2875	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGCTGGCCTTCTCAGT	4532	False	NA	-34	True	AATAAA	-9	NA	139809723	139809368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_139809400_139809700
ENSMUSG00000029552.20_0	chr6	+	2407	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	33	0	-10	0	multi-exon	FALSE	canonical	3	87	junction_1	5.93717104351896	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTGTCTTTCTATGTC	-1	True	NA	NA	False	AATAAA	-15	NA	17065180	17105822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
ENSMUSG00000029554.16_0	chr5	-	2631	18	FSM	ENSMUSG00000029554.16	ENSMUST00000031534.9	2640	18	0	9	0	-4	multi-exon	FALSE	canonical	3	167	junction_17	17.902078903461	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCGGATTGTGTCCAAG	NA	False	NA	-8	True	AATAAA	-18	NA	140307307	139994452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
ENSMUSG00000029554.16_4	chr5	-	2631	18	NNC	ENSMUSG00000029554.16	novel	2640	18	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_17	43.2672550934514	70	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCGGATTGTGTCCAAG	NA	False	NA	-8	True	AATAAA	-18	NA	140307310	139994452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300905_140307261
ENSMUSG00000029554.16_5	chr5	-	2489	17	NIC	ENSMUSG00000029554.16	novel	2640	18	NA	NA	-1	-4	combination_of_known_splicesites	FALSE	canonical	3	24	junction_6	48.426329357076	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCGGATTGTGTCCAAG	NA	False	NA	-8	True	AATAAA	-18	NA	140307306	139994452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
ENSMUSG00000029556.13_0	chr5	-	3008	10	FSM	ENSMUSG00000029556.13	ENSMUST00000031535.12	3191	10	182	1	-41	-1	multi-exon	FALSE	canonical	2	7	junction_9	4.10960933531265	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGGAAGCTTCCTGACTG	NA	False	NA	0	True	AGTAAA	-14	NA	115108944	115087039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115088245_115088752_115088898_115088984_115089104_115090637_115090830_115091385_115091588_115091697_115091847_115093308_115093551_115093874_115094062_115098074_115098275_115108577
ENSMUSG00000029556.13_1	chr5	-	2773	10	NNC	ENSMUSG00000029556.13	novel	3191	10	NA	NA	-2233	-8	at_least_one_novel_splicesite	TRUE	canonical	1	6	junction_9	4.34897462017354	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGCACGTGGAAGCTTC	7925	False	NA	-7	True	AGTAAA	-7	NA	115111386	115087046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_115088245_115088752_115088898_115088984_115089104_115090637_115090830_115091385_115091588_115091697_115091847_115093308_115093551_115093874_115094062_115098074_115098275_115111247
ENSMUSG00000029557.8_0	chr5	-	1176	2	ISM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	832	18	832	-18	3prime_fragment	FALSE	canonical	3	69	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTTATTTTTCTGGCTT	4733	False	NA	-23	True	AAAACA	-19	NA	140316821	140313446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_140314536_140316734
ENSMUSG00000029557.8_1	chr5	-	1407	3	FSM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	18	18	18	-18	multi-exon	FALSE	canonical	3	45	junction_2	12	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTTATTTTTCTGGCTT	3919	False	NA	-23	True	AAAACA	-19	NA	140317635	140313446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_140314536_140316734_140317025_140317607
ENSMUSG00000029557.8_4	chr5	-	428	1	ISM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	3771	26	3771	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTATCATGATTTTATTTT	7672	False	NA	-31	True	AAAACA	-11	NA	140313882	140313454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_140313500_140313900
ENSMUSG00000029559.16_0	chr5	+	1325	6	FSM	ENSMUSG00000029559.16	ENSMUST00000031538.9	2607	6	42	1240	-4	759	multi-exon	FALSE	canonical	3	243	junction_3	24.1909073827337	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTAGCTCTGCCCTGGTC	NA	False	NA	20	True	AATAAA	-22	NA	115080258	115086602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115080415_115083844_115083888_115084076_115084176_115084349_115084424_115085221_115085313_115085740
ENSMUSG00000029559.16_7	chr5	+	1751	5	ISM	ENSMUSG00000029559.16	ENSMUST00000031538.9	2607	6	49	1235	3	764	intron_retention	FALSE	canonical	3	243	junction_3	15.2151240547029	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCTGCCCTGGTCAGTGC	NA	False	NA	25	True	AATAAA	-27	NA	115080265	115086607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_115080415_115083844_115083888_115084076_115084176_115084349_115084424_115085221
ENSMUSG00000029560.13_0	chr5	-	2599	11	FSM	ENSMUSG00000029560.13	ENSMUST00000031539.12	2627	11	27	1	6	-1	multi-exon	FALSE	canonical	3	173	junction_10	18.7160359050735	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGATGGTTTCCACGCTGC	7747	False	NA	-13	True	AATAAA	-13	NA	140374990	140326058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
ENSMUSG00000029560.13_3	chr5	-	745	1	ISM	ENSMUSG00000029560.13	ENSMUST00000197880.5	2590	10	19334	5	12466	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGATGGTTTCCACGCTGC	5082	False	NA	-13	True	AATAAA	-13	NA	140326803	140326058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_140326100_140326800
ENSMUSG00000029569.10_0	chr6	-	3898	5	FSM	ENSMUSG00000029569.10	ENSMUST00000031554.9	4587	5	75	614	2	-614	multi-exon	TRUE	canonical	3	155	junction_4	32.9194091684526	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAAATGCCTTTGCTTTT	6	True	NA	NA	False	ATTAAA	-12	NA	13608024	13581299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236_13603487_13607828
ENSMUSG00000029569.10_1	chr6	-	3268	4	ISM	ENSMUSG00000029569.10	ENSMUST00000031554.9	4587	5	5046	615	4694	-615	3prime_fragment	FALSE	canonical	3	188	junction_3	21.2759645296439	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAAAATGCCTTTGCTTT	4977	False	NA	NA	False	ATTAAA	-11	NA	13603053	13581300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236
ENSMUSG00000029569.10_2	chr6	-	2648	4	FSM	ENSMUSG00000029569.10	ENSMUST00000149123.3	3337	4	75	614	2	-614	multi-exon	FALSE	canonical	3	13	junction_3	103.721850264167	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAAATGCCTTTGCTTTT	6	True	NA	NA	False	ATTAAA	-12	NA	13608024	13581299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13607828
ENSMUSG00000029570.6_0	chr5	+	2278	8	FSM	ENSMUSG00000029570.6	ENSMUST00000031555.3	2305	8	25	2	25	-2	multi-exon	FALSE	canonical	2	6	junction_3	5.13888735674427	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCAAGGGGCCCTAGTCT	NA	False	NA	5	True	AATAAA	-16	NA	140593099	140601298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_140593600_140597604_140597654_140598045_140598146_140598257_140598412_140598514_140598601_140598910_140599077_140599945_140600032_140600161
ENSMUSG00000029571.15_0	chr6	+	6029	9	FSM	ENSMUSG00000029571.15	ENSMUST00000031556.14	6002	9	-39	12	-16	-12	multi-exon	FALSE	canonical	3	91	junction_1	9.57127865021179	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAACAAAGTATTTGGGTC	-14	True	NA	6	True	AATAAA	-40	NA	13069798	13089256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_13069960_13070306_13070414_13071740_13071963_13075034_13075099_13078090_13078251_13081538_13081680_13082411_13082462_13083367_13083422_13084186
ENSMUSG00000029571.15_7	chr6	+	3666	1	ISM	ENSMUSG00000029571.15	ENSMUST00000031556.14	6002	9	15756	9	15344	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGTATTTGGGTCATC	NA	False	NA	9	True	AATAAA	-43	NA	13085593	13089259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_13085600_13089300
ENSMUSG00000029575.18_0	chr5	-	2953	9	FSM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	47	20	8	-20	multi-exon	TRUE	canonical	3	162	junction_1	19.5604032422647	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAAATCAGTGCCTGGAA	NA	False	NA	-18	True	AATAAA	-16	NA	114582074	114569114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
ENSMUSG00000029575.18_1	chr5	-	2004	1	ISM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	11003	20	10935	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAAATCAGTGCCTGGAA	NA	False	NA	-18	True	AATAAA	-16	NA	114571118	114569114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_114569100_114571100
ENSMUSG00000029575.18_6	chr5	-	2633	8	FSM	ENSMUSG00000029575.18	ENSMUST00000123256.3	1277	8	-21	-1335	8	-93	multi-exon	FALSE	canonical	3	177	junction_4	16.4738506458581	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAAGAAACATGATGTGT	NA	False	NA	NA	False	NA	NA	NA	114582074	114571353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
ENSMUSG00000029576.18_1	chr5	-	3652	15	FSM	ENSMUSG00000029576.18	ENSMUST00000063635.15	3700	15	42	6	6	-3	multi-exon	FALSE	canonical	3	29	junction_12	8.41069532906569	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATAGTGGGGATGTAGGA	NA	False	NA	-11	True	AATAAA	-15	NA	142536811	142470599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_142471004_142471167_142471308_142471609_142471747_142472509_142472862_142473201_142473393_142474157_142474309_142479982_142480156_142480490_142480729_142481080_142481194_142483592_142483754_142489667_142489706_142492213_142492844_142493824_142494073_142529159_142529759_142536734
ENSMUSG00000029576.18_11	chr5	-	3632	15	NIC	ENSMUSG00000029576.18	novel	3700	15	NA	NA	-17	-3	combination_of_known_junctions	FALSE	canonical	1	2	junction_14	13.9532747966569	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATAGTGGGGATGTAGGA	NA	False	NA	-11	True	AATAAA	-15	NA	142536737	142470599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_142471004_142471167_142471308_142471609_142471747_142472509_142472862_142473201_142473393_142474157_142474309_142479982_142480156_142480490_142480729_142481080_142481194_142483592_142483754_142489667_142489706_142492213_142492844_142493824_142494073_142529159_142529759_142536680
ENSMUSG00000029576.18_4	chr5	-	3388	14	ISM	ENSMUSG00000029576.18	ENSMUST00000085758.10	3714	15	1211	4	1211	-4	3prime_fragment	FALSE	canonical	3	29	junction_12	8.72797312054176	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTATAGTGGGGATGTAGG	525	False	NA	-12	True	AATAAA	-14	NA	142529572	142470600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_142471004_142471167_142471308_142471609_142471747_142472509_142472862_142473201_142473393_142474157_142474309_142479982_142480156_142480490_142480729_142481080_142481194_142483592_142483754_142489667_142489706_142492213_142492844_142493824_142494073_142529159
ENSMUSG00000029577.14_0	chr5	+	4963	28	FSM	ENSMUSG00000029577.14	ENSMUST00000074002.12	5194	28	224	7	-2	-6	multi-exon	TRUE	canonical	3	241	junction_19	27.3486858419916	539	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGACGGCTCTGTTCTGG	NA	False	NA	14	True	ATTAAA	-14	NA	114518891	114559223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_114519037_114522375_114522464_114525154_114525340_114525441_114525563_114526783_114526844_114527125_114527231_114528450_114528548_114530158_114530245_114531137_114531221_114536468_114536575_114536822_114536944_114537850_114538029_114539328_114539499_114540582_114540751_114542600_114542773_114544232_114544352_114544806_114544922_114545604_114545705_114546157_114546278_114549079_114549257_114549364_114549476_114550226_114550365_114550482_114550549_114550911_114550971_114553262_114553446_114553637_114553750_114556598_114556692_114557538
ENSMUSG00000029578.16_0	chr5	+	4219	12	FSM	ENSMUSG00000029578.16	ENSMUST00000036872.16	5171	12	26	926	-23	-926	multi-exon	FALSE	canonical	3	377	junction_9	31.2155926283724	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTGAAAGCTCCCAGAG	NA	False	NA	4	True	AATAAA	-5	NA	142615322	142655417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_142615588_142623956_142624040_142641602_142641773_142643946_142644044_142644819_142644918_142645287_142645381_142646779_142646851_142648789_142648898_142650079_142650245_142651177_142651286_142651848_142652007_142652614
ENSMUSG00000029578.16_41	chr5	+	2074	1	ISM	ENSMUSG00000029578.16	ENSMUST00000036872.16	5171	12	38054	919	5082	-919	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTCCCAGAGTCAAGTG	NA	False	NA	11	True	AATAAA	-12	NA	142653350	142655424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_142653400_142655400
ENSMUSG00000029580.15_1	chr5	-	1882	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	9	0	-9	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	4800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAAACAGCTTGTGGCTC	8918	False	NA	-10	True	AATAAA	-18	NA	142892480	142888878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
ENSMUSG00000029580.15_5	chr5	-	1850	5	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1020	9	87	-9	3prime_fragment	FALSE	canonical	3	4052	junction_3	83.3351666465004	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAAACAGCTTGTGGCTC	9909	False	NA	-10	True	AATAAA	-18	NA	142891489	142888878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
ENSMUSG00000029580.15_6	chr5	-	1257	3	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	2154	9	-946	-9	3prime_fragment	FALSE	canonical	3	4110	junction_2	81	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAAACAGCTTGTGGCTC	4882	False	NA	-10	True	AATAAA	-18	NA	142890355	142888878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_142889697_142889821_142890004_142890098
ENSMUSG00000029580.15_9	chr5	-	1623	4	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1334	9	401	-9	3prime_fragment	FALSE	canonical	3	4052	junction_3	93.09970760188	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAAACAGCTTGTGGCTC	4062	False	NA	-10	True	AATAAA	-18	NA	142891175	142888878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991
ENSMUSG00000029581.15_2	chr5	+	2658	5	FSM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	14	3	14	-1	multi-exon	FALSE	canonical	3	2634	junction_2	132.012310032057	5610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGCCCGTGTGTGTCTCAG	NA	False	NA	15	True	AATAAA	-15	NA	142946111	142958937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
ENSMUSG00000029587.17_0	chr5	+	4429	5	FSM	ENSMUSG00000029587.17	ENSMUST00000075916.8	4384	5	-51	6	22	2	multi-exon	FALSE	canonical	2	8	junction_3	16.7835484924971	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTGTGTATGCTTCC	NA	False	NA	13	True	AATGAA	-5	NA	143220950	143233705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143221135_143222008_143222072_143225708_143225906_143226074_143226171_143229816
ENSMUSG00000029587.17_1	chr5	+	4351	5	FSM	ENSMUSG00000029587.17	ENSMUST00000032591.15	5265	5	24	890	24	-4	multi-exon	FALSE	canonical	3	36	junction_1	7.11951543294907	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTGAAACAATTGTGTAT	NA	False	NA	7	True	NA	NA	NA	143220952	143233699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143221135_143222008_143222072_143225708_143225836_143226074_143226171_143229816
ENSMUSG00000029587.17_11	chr5	+	2855	1	ISM	ENSMUSG00000029587.17	ENSMUST00000077485.11	4294	4	9927	4	5051	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTGAAACAATTGTGTAT	NA	False	NA	7	True	NA	NA	NA	143230844	143233699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_143230800_143233700
ENSMUSG00000029587.17_3	chr5	+	5219	4	NIC	ENSMUSG00000029587.17	novel	5265	5	NA	NA	36	2	intron_retention	FALSE	canonical	3	41	junction_1	5.43650214343336	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTGTGTATGCTTCC	NA	False	NA	13	True	AATGAA	-5	NA	143220964	143233705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_143222072_143225708_143225836_143226074_143226171_143229816
ENSMUSG00000029587.17_7	chr5	+	4258	4	FSM	ENSMUSG00000029587.17	ENSMUST00000077485.11	4294	4	32	4	21	-4	multi-exon	FALSE	canonical	3	4	junction_3	16.391054470859	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTGAAACAATTGTGTAT	NA	False	NA	7	True	NA	NA	NA	143220949	143233699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143221135_143222008_143222072_143225708_143225836_143229816
ENSMUSG00000029591.15_1	chr5	+	1859	6	FSM	ENSMUSG00000029591.15	ENSMUST00000102584.11	2136	6	270	7	-33	-4	multi-exon	FALSE	canonical	3	690	junction_3	32.487536071546	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTGGCGGTGTGCCGAC	NA	False	NA	14	True	AATAAA	-10	NA	114269256	114277375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
ENSMUSG00000029591.15_2	chr5	+	1943	7	FSM	ENSMUSG00000029591.15	ENSMUST00000031587.13	1985	7	33	9	33	-4	multi-exon	FALSE	canonical	3	427	junction_1	117.255656106172	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTGGCGGTGTGCCGAC	NA	False	NA	14	True	AATAAA	-10	NA	114268479	114277375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_114268687_114269379_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
ENSMUSG00000029591.15_26	chr5	+	641	1	ISM	ENSMUSG00000029591.15	ENSMUST00000031587.13	1985	7	8288	9	6594	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTGGCGGTGTGCCGAC	NA	False	NA	14	True	AATAAA	-10	NA	114276734	114277375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114276700_114277400
ENSMUSG00000029592.12_15	chr5	+	2541	5	ISM	ENSMUSG00000029592.12	ENSMUST00000031588.12	4604	13	19192	1221	8379	-1221	3prime_fragment	FALSE	canonical	3	48	junction_2	4.9180788932265	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGAAACAGCCAAGTGCGG	9293	False	NA	1	True	AATAAA	-12	NA	114257567	114261560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114257711_114258258_114258340_114258453_114258674_114259092_114259214_114259584
ENSMUSG00000029592.12_18	chr5	+	1575	1	ISM	ENSMUSG00000029592.12	ENSMUST00000031588.12	4604	13	21614	1217	10801	-1217	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGCCAAGTGCGGTGCT	NA	False	NA	5	True	AATAAA	-16	NA	114259989	114261564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114260000_114261600
ENSMUSG00000029592.12_2	chr5	+	2798	13	FSM	ENSMUSG00000029592.12	ENSMUST00000031588.12	4604	13	10	1796	10	-1796	multi-exon	FALSE	canonical	3	37	junction_5	7.25095779113966	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGACTCTTCTGGTCTA	NA	False	NA	14	True	ATTAAA	-16	NA	114238385	114260985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_114238577_114240443_114240554_114241704_114241888_114243808_114243913_114249177_114249277_114249929_114249976_114250947_114251043_114257099_114257160_114257623_114257711_114258258_114258340_114258453_114258674_114259092_114259214_114259584
ENSMUSG00000029592.12_3	chr5	+	2787	13	NIC	ENSMUSG00000029592.12	novel	4604	13	NA	NA	18	-1796	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	11.3293497901101	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGACTCTTCTGGTCTA	NA	False	NA	14	True	ATTAAA	-16	NA	114238393	114260985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_114238577_114240443_114240554_114241704_114241888_114243808_114243913_114249177_114249277_114249932_114249976_114250947_114251043_114257099_114257160_114257623_114257711_114258258_114258340_114258453_114258674_114259092_114259214_114259584
ENSMUSG00000029594.13_0	chr5	+	3955	24	FSM	ENSMUSG00000029594.13	ENSMUST00000031590.12	4010	24	38	17	-14	-7	multi-exon	FALSE	canonical	3	93	junction_16	11.5488606136917	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCCCTCCCTCTACCC	NA	False	NA	4	True	AATAAA	-14	NA	120254567	120337029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_120254715_120256724_120256908_120257696_120257817_120257959_120257996_120258161_120258367_120260957_120261215_120262215_120262297_120262758_120262838_120264238_120264311_120265029_120265231_120266248_120266380_120268774_120268894_120269218_120269316_120270198_120270310_120270906_120271108_120271825_120271947_120278268_120278439_120278601_120278663_120279615_120279696_120281441_120281498_120282061_120282179_120313923_120314030_120324282_120324404_120335946
ENSMUSG00000029594.13_20	chr5	+	3171	19	ISM	ENSMUSG00000029594.13	ENSMUST00000031590.12	4010	24	6527	11	4396	-1	3prime_fragment	FALSE	canonical	3	93	junction_11	11.513277359447	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCCCTCTACCCTGATGT	NA	False	NA	10	True	AATAAA	-20	NA	120261056	120337035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_120261215_120262215_120262297_120262758_120262838_120264238_120264311_120265029_120265231_120266248_120266380_120268774_120268894_120269218_120269316_120270198_120270310_120270906_120271108_120271825_120271947_120278268_120278439_120278601_120278663_120279615_120279696_120281441_120281498_120282061_120282179_120313923_120314030_120324282_120324404_120335946
ENSMUSG00000029598.13_2	chr5	-	2226	12	FSM	ENSMUSG00000029598.13	ENSMUST00000031597.7	4208	12	16	1966	3	-1	multi-exon	FALSE	canonical	3	256	junction_2	57.4604427353187	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGAGGGCCTTGAGTCT	NA	False	NA	-6	True	NA	NA	NA	120641674	120623312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_120623904_120624104_120624268_120624712_120624866_120625494_120625567_120625736_120625833_120626474_120626636_120629190_120629289_120630729_120630945_120631116_120631218_120632442_120632602_120637061_120637156_120641351
ENSMUSG00000029598.13_3	chr5	-	1750	1	ISM	ENSMUSG00000029598.13	ENSMUST00000031597.7	4208	12	17951	643	17927	-643	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATATATATTTATTTTT	6274	False	NA	-32	True	NA	NA	NA	120623739	120621989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_120622000_120623700
ENSMUSG00000029599.14_0	chr5	+	2976	20	FSM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	377	969	-11	-4	multi-exon	FALSE	canonical	3	468	junction_5	36.9159410499192	1050	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGACCAGGAGTGTGGCT	NA	False	NA	23	True	AATAAA	-14	NA	120751180	120765688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
ENSMUSG00000029600.11_10	chr5	-	3755	2	ISM	ENSMUSG00000029600.11	ENSMUST00000136070.8	870	3	-771	2020	-771	-4	5prime_fragment	FALSE	canonical	3	77	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCGGTAGTGTGTTACT	5544	False	NA	NA	False	ATTAAA	-16	NA	120751425	120747126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_120749795_120750338
ENSMUSG00000029600.11_5	chr5	-	1098	4	NIC	ENSMUSG00000029600.11	novel	712	3	NA	NA	2	0	combination_of_known_junctions	TRUE	canonical	2	6	junction_2	29.8923996285938	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCTTCAGTCCTGATACT	6336	False	NA	-4	True	NA	NA	NA	120750633	120740169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_120740583_120742274_120742313_120749442_120749795_120750338
ENSMUSG00000029600.11_6	chr5	-	1565	3	FSM	ENSMUSG00000029600.11	ENSMUST00000031599.9	1573	3	3	5	3	-5	multi-exon	FALSE	canonical	3	77	junction_2	1.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATCGGTAGTGTGTTAC	6318	False	NA	NA	False	ATTAAA	-15	NA	120750651	120747127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_120748028_120749442_120749795_120750338
ENSMUSG00000029600.11_7	chr5	-	2422	4	FSM	ENSMUSG00000029600.11	ENSMUST00000177800.8	1668	4	-759	5	-759	-5	multi-exon	FALSE	canonical	2	9	junction_3	33.2365260920372	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATCGGTAGTGTGTTAC	5556	False	NA	NA	False	ATTAAA	-15	NA	120751413	120747127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_120748028_120749442_120749795_120750044_120750140_120750338
ENSMUSG00000029602.12_0	chr5	+	3196	21	FSM	ENSMUSG00000029602.12	ENSMUST00000156722.2	3251	21	51	4	51	-4	multi-exon	FALSE	canonical	3	12	junction_7	7.30479294709987	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGCCGTGACGTGTTAAA	NA	False	NA	7	True	TATAAA	-17	NA	120787303	120817658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_120787600_120790878_120790936_120792870_120792985_120793132_120793195_120797567_120797698_120800075_120800158_120800248_120800381_120800983_120801070_120801790_120801909_120802035_120802190_120802510_120802576_120802810_120802924_120804307_120804501_120808340_120808479_120809605_120809751_120812631_120812805_120813454_120813593_120813670_120813807_120814852_120814974_120816687_120816759_120816986
ENSMUSG00000029602.12_17	chr5	+	2459	15	ISM	ENSMUSG00000029602.12	ENSMUST00000156722.2	3251	21	12989	7	8810	-7	3prime_fragment	FALSE	canonical	3	12	junction_1	6.35393177328745	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTAGCCGTGACGTGTT	NA	False	NA	4	True	TATAAA	-14	NA	120800241	120817655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_120800381_120800983_120801070_120801790_120801909_120802035_120802190_120802510_120802576_120802810_120802924_120804307_120804501_120808340_120808479_120809605_120809751_120812631_120812805_120813454_120813593_120813670_120813807_120814852_120814974_120816687_120816759_120816986
ENSMUSG00000029602.12_22	chr5	+	1323	6	NNC	ENSMUSG00000029602.12	novel	486	2	NA	NA	-3799	-1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	10.6282642044691	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGTGACGTGTTAAAATC	180	False	NA	10	True	TATAAA	-20	NA	120812858	120817661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_120813041_120813454_120813593_120813670_120813807_120814852_120814974_120816687_120816759_120816986
ENSMUSG00000029602.12_24	chr5	+	454	1	ISM	ENSMUSG00000029602.12	ENSMUST00000031606.10	3212	22	30315	7	544	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTAGCCGTGACGTGTT	3480	False	NA	4	True	TATAAA	-14	NA	120817201	120817655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_120817200_120817700
ENSMUSG00000029602.12_3	chr5	+	2634	15	ISM	ENSMUSG00000029602.12	ENSMUST00000156722.2	3251	21	38	7176	38	-6885	5prime_fragment	TRUE	canonical	3	12	junction_7	6.94291593155592	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120787290	120810486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_120787600_120790878_120790936_120792870_120792985_120793132_120793195_120797567_120797698_120800075_120800158_120800248_120800381_120800983_120801070_120801790_120801909_120802035_120802190_120802510_120802576_120802810_120802924_120804307_120804501_120808340_120808479_120809605
ENSMUSG00000029603.16_1	chr5	-	2763	9	NNC	ENSMUSG00000029603.16	novel	4035	10	NA	NA	-1077	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	41.4123698307643	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120834545	120818267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474_120833178_120834452
ENSMUSG00000029603.16_10	chr5	-	1908	6	NIC	ENSMUSG00000029603.16	novel	2961	8	NA	NA	-532	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	37.5179956820724	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120821512	120818267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_120819538_120820185_120820276_120820368_120820531_120820632_120820804_120821125_120821188_120821359
ENSMUSG00000029603.16_11	chr5	-	2266	8	FSM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	695	0	695	0	multi-exon	FALSE	canonical	3	45	junction_7	31.3453443472057	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120832773	120818267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474
ENSMUSG00000029603.16_3	chr5	-	1896	6	ISM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	11956	0	-532	0	3prime_fragment	FALSE	canonical	3	95	junction_3	14.7051011557214	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120821512	120818267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359
ENSMUSG00000029603.16_4	chr5	-	3775	10	FSM	ENSMUSG00000029603.16	ENSMUST00000031607.7	4035	10	259	1	259	0	multi-exon	FALSE	canonical	1	2	junction_8	46.8325095485741	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120849733	120818267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474_120833178_120848119_120849041_120849549
ENSMUSG00000029603.16_6	chr5	-	1743	5	ISM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	12281	0	-207	0	3prime_fragment	FALSE	canonical	3	95	junction_3	13.57156954814	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120821187	120818267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125
ENSMUSG00000029603.16_7	chr5	-	1237	1	FSM	ENSMUSG00000029603.16	ENSMUST00000201264.2	1831	1	640	-46	640	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120819504	120818267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_120818300_120819500
ENSMUSG00000029603.16_8	chr5	-	3427	9	ISM	ENSMUSG00000029603.16	ENSMUST00000031607.7	4035	10	1115	2	1115	-1	3prime_fragment	FALSE	canonical	1	2	junction_8	42.1188793773054	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGGCCTTTTTCTGCCA	NA	False	NA	-20	True	AATAAA	-14	NA	120848877	120818268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474_120833178_120848119
ENSMUSG00000029603.16_9	chr5	-	1622	4	FSM	ENSMUSG00000029603.16	ENSMUST00000151562.2	507	4	134	-1249	134	0	multi-exon	FALSE	canonical	3	95	junction_3	11.323525167642	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120820744	120818267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644
ENSMUSG00000029610.14_1	chr5	-	1161	4	FSM	ENSMUSG00000029610.14	ENSMUST00000031613.11	1185	4	22	2	22	-2	multi-exon	FALSE	canonical	3	560	junction_3	88.5023540176569	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGAGTTTATTTTATTTT	NA	False	NA	-20	True	AATAAA	-14	NA	143846635	143839523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846398
ENSMUSG00000029610.14_2	chr5	-	5722	2	ISM	ENSMUSG00000029610.14	ENSMUST00000031613.11	1185	4	38	2	-13	-2	intron_retention	FALSE	canonical	3	571	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGAGTTTATTTTATTTT	NA	False	NA	-20	True	AATAAA	-14	NA	143846619	143839523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_143840009_143841382
ENSMUSG00000029610.14_3	chr5	-	1041	4	FSM	ENSMUSG00000029610.14	ENSMUST00000100483.3	1073	4	30	2	22	-2	multi-exon	FALSE	canonical	3	207	junction_3	226.993881464286	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGAGTTTATTTTATTTT	NA	False	NA	-20	True	AATAAA	-14	NA	143846635	143839523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846518
ENSMUSG00000029613.16_0	chr5	+	2755	15	FSM	ENSMUSG00000029613.16	ENSMUST00000100487.6	4325	15	30	1540	-13	-1540	multi-exon	FALSE	canonical	3	166	junction_1	19.8185647866863	370	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTACTTTATTGGACAAG	NA	False	NA	14	True	AATAAA	-19	NA	143803572	143839529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252_143816334_143818970_143819071_143820790_143820849_143821473_143821799_143823667_143823780_143826213_143826315_143833982_143834095_143834292_143834376_143835831_143836066_143838602
ENSMUSG00000029614.14_0	chr5	+	942	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	275	-12	0	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	3878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	1	True	ATTAAA	-15	NA	121342596	121347029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
ENSMUSG00000029614.14_25	chr5	+	925	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	923	275	-5	0	3prime_fragment	FALSE	canonical	3	14010	junction_2	1238.46727853424	1325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	1	True	ATTAAA	-15	NA	121343466	121347029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
ENSMUSG00000029616.10_1	chr5	-	1240	3	FSM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	34	3930	15	2	multi-exon	FALSE	canonical	3	820	junction_1	20.5	577	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTTTCTTTTTAGAT	3246	False	NA	-39	True	AATAAA	-16	NA	121590535	121582816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121583636_121585203_121585343_121590253
ENSMUSG00000029617.11_0	chr5	-	1795	15	FSM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	-33	7	-9	-7	multi-exon	FALSE	canonical	3	726	junction_9	71.895615943093	767	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATACTGGTTTCCTGTT	NA	False	NA	-6	True	AATAAA	-15	NA	143951704	143924733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
ENSMUSG00000029621.15_0	chr5	+	1598	10	FSM	ENSMUSG00000029621.15	ENSMUST00000031625.15	1632	10	28	6	-26	-1	multi-exon	TRUE	canonical	3	332	junction_5	31.8084545015595	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAAGTGTTTTTTCTTTA	NA	False	NA	16	True	ATTAAA	-17	NA	145020667	145045565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
ENSMUSG00000029622.17_0	chr5	+	1538	10	FSM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	51	1516	8	95	multi-exon	FALSE	canonical	3	1600	junction_4	137.116333413962	1580	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCGGGCGTGGTGGCAC	8083	False	NA	26	True	AATAAA	-12	NA	145051075	145064993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
ENSMUSG00000029623.15_0	chr5	-	1258	6	FSM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	207	888	-33	427	multi-exon	FALSE	canonical	3	415	junction_5	28.7708185493566	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCCTTGTTTGGCAGTT	NA	False	NA	-25	True	ATTAAA	-12	NA	145076841	145066466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073804_145076776
ENSMUSG00000029623.15_1	chr5	-	477	1	ISM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	10106	887	5340	428	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCCTTGTTTGGCAGTTT	NA	False	NA	-24	True	ATTAAA	-13	NA	145066942	145066465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_145066500_145066900
ENSMUSG00000029623.15_4	chr5	-	1067	4	ISM	ENSMUSG00000029623.15	ENSMUST00000123111.8	1017	5	1558	-427	334	427	3prime_fragment	FALSE	canonical	3	462	junction_1	14.7044966667418	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCCTTGTTTGGCAGTT	NA	False	NA	-25	True	ATTAAA	-12	NA	145071948	145066466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874
ENSMUSG00000029623.15_7	chr5	-	933	3	ISM	ENSMUSG00000029623.15	ENSMUST00000123111.8	1017	5	3777	-428	2553	428	3prime_fragment	FALSE	canonical	3	462	junction_1	18	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCCTTGTTTGGCAGTTT	NA	False	NA	-24	True	ATTAAA	-13	NA	145069729	145066465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_145067186_145068174_145068327_145069668
ENSMUSG00000029624.11_2	chr5	-	3023	9	FSM	ENSMUSG00000029624.11	ENSMUST00000031628.10	3087	9	52	12	52	-12	multi-exon	FALSE	canonical	3	72	junction_5	16.4350045634311	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAGTTTTAACTGAGTGC	NA	False	NA	-10	True	AATAAA	-18	NA	145103866	145084335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_145085316_145088095_145088279_145088927_145089045_145091483_145092189_145095549_145095652_145096284_145096504_145097848_145097990_145101870_145102344_145103763
ENSMUSG00000029624.11_4	chr5	-	1457	4	ISM	ENSMUSG00000029624.11	ENSMUST00000031628.10	3087	9	12259	11	12107	-11	3prime_fragment	FALSE	canonical	3	95	junction_3	1.24721912892465	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGTTTTAACTGAGTGCG	NA	False	NA	-9	True	AATAAA	-19	NA	145091659	145084334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_145085316_145088095_145088279_145088927_145089045_145091483
ENSMUSG00000029624.11_8	chr5	-	2509	8	ISM	ENSMUSG00000029624.11	ENSMUST00000031628.10	3087	9	1986	12	1834	-12	3prime_fragment	FALSE	canonical	3	72	junction_5	9.14732033918978	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAGTTTTAACTGAGTGC	NA	False	NA	-10	True	AATAAA	-18	NA	145101932	145084335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_145085316_145088095_145088279_145088927_145089045_145091483_145092189_145095549_145095652_145096284_145096504_145097848_145097990_145101870
ENSMUSG00000029625.17_0	chr5	+	1677	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160629.8	1713	8	35	1	1	0	multi-exon	FALSE	canonical	3	267	junction_6	186.36939400129	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTTTCATTACTTA	NA	False	NA	22	True	ATTAAA	-14	NA	145104057	145118850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115645_145115739_145117945
ENSMUSG00000029625.17_2	chr5	+	1681	8	FSM	ENSMUSG00000029625.17	ENSMUST00000162244.8	1387	8	-7	-287	0	0	multi-exon	FALSE	canonical	3	381	junction_6	148.975001327096	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTTTCATTACTTA	NA	False	NA	22	True	ATTAAA	-14	NA	145104056	145118850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115642_145115739_145117945
ENSMUSG00000029625.17_42	chr5	+	1926	1	NIC	ENSMUSG00000029625.17	novel	1713	8	NA	NA	9572	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTTTCATTACTTA	2634	False	NA	22	True	ATTAAA	-14	NA	145116924	145118850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_145116900_145118800
ENSMUSG00000029625.17_6	chr5	+	1758	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160422.8	1756	8	-2	0	-2	0	multi-exon	FALSE	canonical	3	31	junction_6	266.097419631784	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTTTCATTACTTA	NA	False	NA	22	True	ATTAAA	-14	NA	145104054	145118850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115567_145115739_145117945
ENSMUSG00000029627.13_0	chr5	-	1937	3	FSM	ENSMUSG00000029627.13	ENSMUST00000031632.9	1967	3	9	21	-2	-21	multi-exon	FALSE	canonical	3	18	junction_2	1	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGACTTTTGTTGTGAT	1600	False	NA	NA	False	NA	NA	NA	145138669	145131776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_145133010_145135486_145135611_145138089
ENSMUSG00000029629.18_0	chr6	+	3113	18	NIC	ENSMUSG00000029629.18	novel	727	6	NA	NA	-35	-8	combination_of_known_junctions	FALSE	canonical	3	67	junction_1	28.9182118357714	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGGAGCTTGTATTTGA	-16	True	NA	-3	True	AATAAA	-8	NA	11907847	12081189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_11908017_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12047825_12047944_12080995
ENSMUSG00000029629.18_1	chr6	+	3299	16	NIC	ENSMUSG00000029629.18	novel	727	6	NA	NA	-37	-411	combination_of_known_junctions	FALSE	canonical	3	67	junction_1	26.8104457255004	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGATGGCCTAGATAGAG	-18	True	NA	3	True	AATAAA	-9	NA	11907845	12007601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_11908017_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983
ENSMUSG00000029629.18_14	chr6	+	3329	18	FSM	ENSMUSG00000029629.18	ENSMUST00000115511.9	3336	18	-8	15	-7	-8	multi-exon	FALSE	canonical	3	71	junction_1	28.335117658721	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGGAGCTTGTATTTGA	1	True	NA	-3	True	AATAAA	-8	NA	11925906	12081189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12047825_12047944_12080995
ENSMUSG00000029629.18_15	chr6	+	3312	17	FSM	ENSMUSG00000029629.18	ENSMUST00000115510.8	3353	17	22	19	-12	-19	multi-exon	FALSE	canonical	3	33	junction_16	37.0717210282986	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATGATAAAACACAT	-4	True	NA	NA	False	AGTAAA	-16	NA	11925901	12007993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12007703
ENSMUSG00000029629.18_16	chr6	+	3513	16	FSM	ENSMUSG00000029629.18	ENSMUST00000090632.11	3985	16	-7	479	-7	-411	multi-exon	FALSE	canonical	3	71	junction_1	26.0421879947818	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGATGGCCTAGATAGAG	1	True	NA	3	True	AATAAA	-9	NA	11925906	12007601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983
ENSMUSG00000029629.18_2	chr6	+	3103	17	NIC	ENSMUSG00000029629.18	novel	727	6	NA	NA	28	-19	combination_of_known_junctions	FALSE	canonical	3	33	junction_16	37.5349836818934	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATGATAAAACACAT	-28	True	NA	NA	False	AGTAAA	-16	NA	11907835	12007993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_11908017_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12007703
ENSMUSG00000029632.8_0	chr6	-	495	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204978.3	610	4	34	81	1	0	multi-exon	FALSE	canonical	3	8511	junction_2	453.262494465281	1294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGTGTCACTATTTAATG	3	True	NA	-12	True	AATAAA	-14	NA	11907448	11900371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322
ENSMUSG00000029634.16_0	chr5	-	3136	5	FSM	ENSMUSG00000029634.16	ENSMUST00000067837.10	2388	5	6	-754	6	-7	multi-exon	FALSE	canonical	3	38	junction_4	36.6401419211225	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTAAAGACTGTGTGC	2766	False	NA	NA	False	ATTAAA	-17	NA	146157780	146146012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146157749
ENSMUSG00000029634.16_1	chr5	-	3321	5	FSM	ENSMUSG00000029634.16	ENSMUST00000161859.8	3452	5	120	11	-17	-7	multi-exon	FALSE	canonical	3	59	junction_4	27.6348964173923	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTAAAGACTGTGTGC	2301	False	NA	NA	False	ATTAAA	-17	NA	146158245	146146012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146158029
ENSMUSG00000029634.16_2	chr5	-	2964	3	ISM	ENSMUSG00000029634.16	ENSMUST00000169407.9	3276	5	2860	10	-52	-10	3prime_fragment	FALSE	canonical	3	117	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAACACTAAAGACTGTG	5695	False	NA	NA	False	ATTAAA	-14	NA	146154851	146146015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_146148743_146152906_146153003_146154710
ENSMUSG00000029634.16_3	chr5	-	3104	4	ISM	ENSMUSG00000029634.16	ENSMUST00000169407.9	3276	5	415	10	415	-10	3prime_fragment	FALSE	canonical	3	117	junction_2	5.09901951359278	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAACACTAAAGACTGTG	3250	False	NA	NA	False	ATTAAA	-14	NA	146157296	146146015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211
ENSMUSG00000029634.16_4	chr5	-	1752	1	ISM	ENSMUSG00000029634.16	ENSMUST00000161859.8	3452	5	10601	11	7035	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTAAAGACTGTGTGC	NA	False	NA	NA	False	ATTAAA	-17	NA	146147764	146146012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_146146000_146147800
ENSMUSG00000029634.16_7	chr5	-	3306	5	FSM	ENSMUSG00000029634.16	ENSMUST00000169407.9	3276	5	-40	10	5	-10	multi-exon	FALSE	canonical	1	2	junction_4	52.1488254901297	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAACACTAAAGACTGTG	2795	False	NA	NA	False	ATTAAA	-14	NA	146157751	146146015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146157547
ENSMUSG00000029635.16_12	chr5	+	2982	13	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	1	-9	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	30.8661987005563	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATCAATGTATGGTGTC	NA	False	NA	NA	False	AATAAA	-11	NA	146168040	146239675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_146168631_146196314_146196391_146205024_146205097_146208404_146208546_146220438_146220497_146222917_146223050_146229433_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
ENSMUSG00000029635.16_16	chr5	+	2544	13	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	-8	-9	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	32.5016025245936	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATCAATGTATGGTGTC	NA	False	NA	NA	False	AATAAA	-11	NA	146168031	146239675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_146168145_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229433_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
ENSMUSG00000029635.16_18	chr5	+	3009	13	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	-2	-9	combination_of_known_junctions	FALSE	canonical	2	6	junction_6	31.927870096342	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATCAATGTATGGTGTC	NA	False	NA	NA	False	AATAAA	-11	NA	146168037	146239675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_146168631_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229448_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
ENSMUSG00000029635.16_29	chr5	+	3698	7	ISM	ENSMUSG00000029635.16	ENSMUST00000031640.15	2973	13	59553	7	-4069	-7	3prime_fragment	FALSE	canonical	3	79	junction_1	20.0118020733322	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAATGTATGGTGTCAA	NA	False	NA	NA	False	AATAAA	-13	NA	146227650	146239677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
ENSMUSG00000029635.16_30	chr5	+	4534	6	FSM	ENSMUSG00000029635.16	ENSMUST00000159615.2	1976	6	-2512	-46	-2512	-9	multi-exon	FALSE	canonical	3	84	junction_4	17.7831380807775	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATCAATGTATGGTGTC	NA	False	NA	NA	False	AATAAA	-11	NA	146229207	146239675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
ENSMUSG00000029635.16_34	chr5	+	769	1	ISM	ENSMUSG00000029635.16	ENSMUST00000162494.8	2973	12	70869	7	5734	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAATGTATGGTGTCAA	7349	False	NA	NA	False	AATAAA	-13	NA	146238908	146239677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_146238900_146239700
ENSMUSG00000029635.16_4	chr5	+	3024	13	FSM	ENSMUSG00000029635.16	ENSMUST00000031640.15	2973	13	-60	9	-2	-9	multi-exon	FALSE	canonical	3	65	junction_3	19.7545704978761	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATCAATGTATGGTGTC	NA	False	NA	NA	False	AATAAA	-11	NA	146168037	146239675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_146168631_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229433_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
ENSMUSG00000029635.16_6	chr5	+	2877	12	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	1	-9	combination_of_known_splicesites	FALSE	canonical	3	33	junction_6	26.9241358433115	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATCAATGTATGGTGTC	NA	False	NA	NA	False	AATAAA	-11	NA	146168040	146239675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_146168631_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
ENSMUSG00000029636.12_0	chr5	+	4910	10	FSM	ENSMUSG00000029636.12	ENSMUST00000016143.9	5196	10	284	2	284	-2	multi-exon	TRUE	canonical	3	97	junction_1	19.5037191768236	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGGTTCTGCTTATTTA	NA	False	NA	13	True	AATAAA	-17	NA	146322078	146410423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_146322149_146358727_146358816_146372134_146372278_146388680_146388816_146390125_146390280_146392353_146392472_146397774_146397951_146403607_146403875_146405024_146405390_146407029
ENSMUSG00000029636.12_18	chr5	+	2368	1	ISM	ENSMUSG00000029636.12	ENSMUST00000016143.9	5196	10	86262	1	15638	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGTTCTGCTTATTTAT	NA	False	NA	14	True	AATAAA	-18	NA	146408056	146410424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_146408100_146410400
ENSMUSG00000029636.12_2	chr5	+	4735	9	NIC	ENSMUSG00000029636.12	novel	5196	10	NA	NA	284	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	46.4569693372265	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGTTCTGCTTATTTAT	NA	False	NA	14	True	AATAAA	-18	NA	146322078	146410424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_146322149_146358727_146358816_146372134_146372278_146388680_146388816_146390125_146390280_146392353_146392472_146403607_146403875_146405024_146405390_146407029
ENSMUSG00000029636.12_4	chr5	+	4890	10	NIC	ENSMUSG00000029636.12	novel	5196	10	NA	NA	293	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	55.5139844465861	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTACATGGTTCTGCTT	NA	False	NA	8	True	AATAAA	-12	NA	146322087	146410418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_146322149_146358727_146358816_146372134_146372278_146388680_146388816_146390125_146390280_146392353_146392472_146402659_146402830_146403607_146403875_146405024_146405390_146407029
ENSMUSG00000029636.12_9	chr5	+	4842	9	ISM	ENSMUSG00000029636.12	ENSMUST00000016143.9	5196	10	36932	1	-33692	-1	3prime_fragment	FALSE	canonical	3	111	junction_3	17.414074767268	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGTTCTGCTTATTTAT	NA	False	NA	14	True	AATAAA	-18	NA	146358726	146410424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_146358816_146372134_146372278_146388680_146388816_146390125_146390280_146392353_146392472_146397774_146397951_146403607_146403875_146405024_146405390_146407029
ENSMUSG00000029638.18_0	chr6	+	3018	8	FSM	ENSMUSG00000029638.18	ENSMUST00000064285.15	6200	8	-193	3375	-193	102	multi-exon	FALSE	canonical	0	0	junction_4	3.04389653609465	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCATTGCGTGTGACGAAA	-6	True	NA	NA	False	AATAAA	-28	NA	8509406	8594173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_8510320_8537816_8537969_8558499_8558587_8573184_8573299_8579586_8579740_8582579_8582791_8591544_8591666_8592906
ENSMUSG00000029638.18_1	chr6	+	3107	8	NIC	ENSMUSG00000029638.18	novel	6200	8	NA	NA	-185	196	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	2.9623487647611	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGGCCATTGGGGTCAT	2	True	NA	NA	False	AATAAA	-16	NA	8509414	8594267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_8510320_8537816_8537969_8558499_8558587_8573181_8573299_8579586_8579740_8582579_8582791_8591544_8591666_8592906
ENSMUSG00000029638.18_4	chr6	+	3537	1	ISM	ENSMUSG00000029638.18	ENSMUST00000064285.15	6200	8	84409	3	14304	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATAGTTTACATGTGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	8594008	8597545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_8594000_8597500
ENSMUSG00000029640.18_0	chr5	-	2229	1	ISM	ENSMUSG00000029640.18	ENSMUST00000085614.6	4327	9	57951	18	21393	12	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTGTTGGTTTTTAACT	NA	False	NA	NA	False	NA	NA	NA	146673865	146671636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_146671600_146673900
ENSMUSG00000029640.18_1	chr5	-	4130	9	FSM	ENSMUSG00000029640.18	ENSMUST00000085614.6	4327	9	172	25	172	5	multi-exon	FALSE	canonical	3	222	junction_1	37.7638633484446	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATTTGTGCTTGTTGGTT	1294	False	NA	NA	False	NA	NA	NA	146731644	146671643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_146674591_146675909_146675989_146677103_146677302_146688504_146688589_146688702_146688780_146691179_146691410_146700010_146700225_146705746_146705828_146731424
ENSMUSG00000029640.18_2	chr5	-	3926	8	NIC	ENSMUSG00000029640.18	novel	4327	9	NA	NA	161	4	combination_of_known_splicesites	FALSE	canonical	3	20	junction_6	96.469726667309	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTATTTGTGCTTGTTGGT	1283	False	NA	NA	False	NA	NA	NA	146731655	146671644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_146674591_146675909_146675989_146677103_146677302_146688504_146688589_146688702_146688780_146691179_146691410_146705746_146705828_146731424
ENSMUSG00000029641.9_0	chr5	+	1052	4	FSM	ENSMUSG00000029641.9	ENSMUST00000031646.8	1126	4	68	6	68	-6	multi-exon	FALSE	canonical	2	3	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTATTCCTTGTTTTCT	9	True	NA	NA	False	ATTAAA	-12	NA	146781948	146784530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_146782151_146782469_146782527_146782649_146782730_146783817
ENSMUSG00000029642.12_0	chr5	+	665	2	FSM	ENSMUSG00000029642.12	ENSMUST00000050970.4	1196	2	525	6	11	-6	multi-exon	FALSE	canonical	3	451	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTAGTTTTGAGTGGTTT	NA	False	NA	16	True	NA	NA	NA	147014384	147015890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_147014504_147015344
ENSMUSG00000029642.12_10	chr5	+	576	1	ISM	ENSMUSG00000029642.12	ENSMUST00000110557.5	1137	3	33432	8	5412	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGCGGTGCTTTCCTCTT	NA	False	NA	8	True	AATAAA	-9	NA	147047587	147048163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_147047600_147048200
ENSMUSG00000029642.12_5	chr5	+	905	3	FSM	ENSMUSG00000029642.12	ENSMUST00000110557.5	1137	3	229	3	11	-3	multi-exon	FALSE	canonical	3	400	junction_1	26.5	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGCTTTCCTCTTTTGGG	NA	False	NA	13	True	AATAAA	-14	NA	147014384	147048168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_147014504_147038038_147038114_147047457
ENSMUSG00000029647.16_1	chr5	+	5135	20	NIC	ENSMUSG00000029647.16	novel	5048	19	NA	NA	16	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	39.0901366224708	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATAAACTTGTATTTCT	NA	False	NA	NA	False	AATAAA	-8	NA	147366986	147485297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_147367820_147387462_147387585_147390061_147390129_147391927_147391999_147424920_147425069_147439894_147440013_147456314_147456563_147458639_147458745_147459985_147460044_147463328_147463491_147463734_147463852_147463938_147464041_147466764_147466931_147468026_147468118_147473210_147473351_147476052_147476183_147476551_147476617_147479879_147480019_147482415_147482546_147483174
ENSMUSG00000029647.16_3	chr5	+	4999	19	FSM	ENSMUSG00000029647.16	ENSMUST00000031651.15	5048	19	34	15	34	-1	multi-exon	FALSE	canonical	3	100	junction_5	15.1677858764904	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATAAACTTGTATTTCT	NA	False	NA	NA	False	AATAAA	-8	NA	147367004	147485297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_147367820_147387462_147387585_147390061_147390129_147391927_147391999_147424920_147425069_147456314_147456563_147458639_147458745_147459985_147460044_147463328_147463491_147463734_147463852_147463938_147464041_147466764_147466931_147468026_147468118_147473210_147473351_147476052_147476183_147476551_147476617_147479879_147480019_147482415_147482546_147483174
ENSMUSG00000029647.16_4	chr5	+	5646	18	ISM	ENSMUSG00000029647.16	ENSMUST00000031651.15	5048	19	16	15	16	-1	intron_retention	FALSE	canonical	3	100	junction_5	15.3065560280373	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATAAACTTGTATTTCT	NA	False	NA	NA	False	AATAAA	-8	NA	147366986	147485297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_147367820_147387462_147387585_147390061_147390129_147391927_147391999_147424920_147425069_147456314_147456563_147458639_147458745_147459985_147460044_147463328_147463491_147463734_147463852_147463938_147464041_147466764_147466931_147468026_147468118_147473210_147473351_147476052_147476183_147476551_147476617_147479879_147480019_147482415
ENSMUSG00000029647.16_55	chr5	+	1989	1	ISM	ENSMUSG00000029647.16	ENSMUST00000031651.15	5048	19	116340	13	7224	1	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAACTTGTATTTCTGT	NA	False	NA	NA	False	AATAAA	-10	NA	147483310	147485299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_147483300_147485300
ENSMUSG00000029649.11_0	chr5	+	726	6	FSM	ENSMUSG00000029649.11	ENSMUST00000031654.10	1579	6	175	678	-1	167	multi-exon	FALSE	canonical	3	2983	junction_1	193.876661823954	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATCATGTGTGTGGTTGG	NA	False	NA	30	True	AATAAA	-20	NA	147797445	147812588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221_147806324_147809375_147809470_147812273
ENSMUSG00000029649.11_7	chr5	+	671	5	ISM	ENSMUSG00000029649.11	ENSMUST00000031654.10	1579	6	2091	678	1899	167	3prime_fragment	FALSE	canonical	3	3006	junction_2	190.255584674931	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATCATGTGTGTGGTTGG	NA	False	NA	30	True	AATAAA	-20	NA	147799361	147812588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_147799461_147805532_147805594_147806221_147806324_147809375_147809470_147812273
ENSMUSG00000029650.11_0	chr5	-	2448	6	FSM	ENSMUSG00000029650.11	ENSMUST00000031655.4	2434	6	2	-16	2	12	multi-exon	FALSE	canonical	1	3	junction_4	0.8	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTCCTAGTATTTTATT	NA	False	NA	NA	False	AATGAA	-42	NA	147831623	147815234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_147816025_147816502_147816660_147821006_147821091_147822780_147823652_147830642_147830856_147831290
ENSMUSG00000029650.11_6	chr5	-	2795	6	FSM	ENSMUSG00000029650.11	ENSMUST00000118527.8	2210	6	2	-587	2	587	multi-exon	FALSE	canonical	1	3	junction_4	0.894427190999916	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTTCCAATGTATTTT	NA	False	NA	NA	False	TATAAA	-15	NA	147831623	147814659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_147816025_147816502_147816660_147821006_147821091_147822780_147823652_147830642_147830856_147831518
ENSMUSG00000029651.17_0	chr5	+	7070	15	NIC	ENSMUSG00000029651.17	novel	7543	15	NA	NA	124	-13	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	36.6595617729912	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCCCATGATATCCATGT	NA	False	NA	0	True	ATTAAA	-13	NA	147894275	148252862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_147894532_148012989_148015369_148019766_148020008_148043814_148044010_148140731_148140894_148168546_148168646_148173075_148173288_148214409_148214477_148225683_148225899_148232292_148232399_148235061_148235136_148238207_148238307_148240292_148240413_148243439_148243538_148250115
ENSMUSG00000029651.17_11	chr5	+	3635	2	NIC	ENSMUSG00000029651.17	novel	585	4	NA	NA	69	-5	intron_retention	FALSE	canonical	3	103	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTACAGAGGCTCCTCCT	NA	False	NA	10	True	ATTAAA	-18	NA	148240052	148250265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_148243538_148250115
ENSMUSG00000029651.17_12	chr5	+	1567	1	ISM	ENSMUSG00000029651.17	ENSMUST00000085558.11	7543	15	357172	7	11318	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATATCCATGTGGTCTG	NA	False	NA	6	True	ATTAAA	-19	NA	148251301	148252868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_148251300_148252900
ENSMUSG00000029651.17_4	chr5	+	2670	14	ISM	ENSMUSG00000029651.17	ENSMUST00000085558.11	7543	15	120412	2605	-5156	0	3prime_fragment	FALSE	canonical	0	0	junction_3	37.6453396535765	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCCTCCTCTGGA	NA	False	NA	15	True	ATTAAA	-23	NA	148014541	148250270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_148015369_148019766_148020008_148043814_148044010_148140731_148140894_148168546_148168646_148173075_148173288_148214409_148214477_148225683_148225899_148232292_148232399_148235061_148235136_148238207_148238307_148240292_148240413_148243439_148243538_148250115
ENSMUSG00000029651.17_7	chr5	+	3034	4	FSM	ENSMUSG00000029651.17	ENSMUST00000085554.5	1009	4	24	-2049	24	-16	multi-exon	FALSE	canonical	3	48	junction_1	28.87136220471	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGACTCCCATGATATCCA	NA	False	NA	-3	True	ATTAAA	-10	NA	148240007	148252859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_148240080_148240292_148240413_148243439_148243538_148250115
ENSMUSG00000029651.17_8	chr5	+	3134	4	FSM	ENSMUSG00000029651.17	ENSMUST00000152105.8	585	4	43	-2592	34	-13	multi-exon	FALSE	canonical	3	51	junction_1	27.4752413799932	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCCCATGATATCCATGT	NA	False	NA	0	True	ATTAAA	-13	NA	148240017	148252862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_148240187_148240292_148240413_148243439_148243538_148250115
ENSMUSG00000029651.17_9	chr5	+	3212	3	ISM	ENSMUSG00000029651.17	ENSMUST00000110514.8	1532	8	37894	-2017	65	-10	3prime_fragment	FALSE	canonical	3	103	junction_2	5.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCATGATATCCATGTGGT	NA	False	NA	3	True	ATTAAA	-16	NA	148240048	148252865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_148240413_148243439_148243538_148250115
ENSMUSG00000029655.18_1	chr5	-	2632	1	FSM	ENSMUSG00000029655.18	ENSMUST00000201384.2	7526	1	5939	-1045	5197	1045	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGATAGTGTCCTGAACAG	635	False	NA	NA	False	AATACA	-17	NA	150565787	150563155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_150563200_150565800
ENSMUSG00000029655.18_13	chr5	-	2171	6	NIC	ENSMUSG00000029655.18	novel	8982	6	NA	NA	-85	48	combination_of_known_junctions	FALSE	canonical	3	9	junction_5	100.608945924306	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAATGTTTTTATAAT	5618	False	NA	-17	True	AATAAA	-17	NA	150588896	150566416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743_150585979_150588615
ENSMUSG00000029655.18_2	chr5	-	1978	6	FSM	ENSMUSG00000029655.18	ENSMUST00000118316.8	8982	6	24	6980	-11	48	multi-exon	FALSE	canonical	3	228	junction_5	18.6010752377383	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAATGTTTTTATAAT	5461	False	NA	-17	True	AATAAA	-17	NA	150589053	150566416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743_150585979_150588965
ENSMUSG00000029655.18_7	chr5	-	1481	5	ISM	ENSMUSG00000029655.18	ENSMUST00000118316.8	8982	6	3513	6975	-612	53	3prime_fragment	FALSE	canonical	3	244	junction_2	15.8902485820707	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTTTTATAATCTTTT	8950	False	NA	-12	True	AATAAA	-22	NA	150585564	150566411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743
ENSMUSG00000029656.14_0	chr4	+	1911	4	FSM	ENSMUSG00000029656.14	ENSMUST00000123892.2	1061	4	-21	-829	-21	821	multi-exon	FALSE	canonical	1	1	junction_3	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGCAGTTTGTTACGGG	NA	False	NA	NA	False	AATAAA	-10	NA	104656383	104662566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_104656711_104657531_104657686_104658534_104658604_104661205
ENSMUSG00000029657.16_0	chr5	-	3403	18	FSM	ENSMUSG00000029657.16	ENSMUST00000202361.4	3802	18	97	302	-32	-1	multi-exon	FALSE	canonical	3	1194	junction_12	107.653101726883	2816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCTGTTGGCTTTGTCTC	NA	False	NA	-7	True	AATAAA	-23	NA	149559706	149540310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
ENSMUSG00000029657.16_4	chr5	-	3358	19	NIC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	169	junction_18	290.373753405274	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559820	149540309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434_149559625_149559784
ENSMUSG00000029658.18_1	chr5	+	676	2	NNC	ENSMUSG00000029658.18	novel	2482	23	NA	NA	28330	-2	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAATCAGATTCTCGCTG	4903	False	NA	NA	False	NA	NA	NA	149533572	149535357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_149533852_149534960
ENSMUSG00000029658.18_2	chr5	+	913	4	ISM	ENSMUSG00000029658.18	ENSMUST00000202902.2	2574	23	67628	6	15583	-6	3prime_fragment	FALSE	canonical	1	2	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAACAAATCAGATTCTC	NA	False	NA	NA	False	NA	NA	NA	149520825	149535353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_149521054_149522668_149522863_149529753_149529852_149534960
ENSMUSG00000029661.17_2	chr6	+	4682	52	FSM	ENSMUSG00000029661.17	ENSMUST00000031668.10	5348	52	125	541	-84	-541	multi-exon	TRUE	canonical	0	0	junction_1	2.18590078578381	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCGCACCACTTGTGGCTT	378	False	NA	NA	False	NA	NA	NA	4505617	4541003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_4505910_4508334_4508346_4508939_4508955_4509603_4509640_4510683_4510795_4512360_4512415_4515209_4515255_4515480_4515535_4515628_4515683_4515960_4516015_4516391_4516446_4516899_4516954_4518473_4518519_4518790_4518845_4518947_4518993_4519291_4519346_4519829_4519929_4520037_4520083_4520170_4520270_4520595_4520650_4520771_4520880_4521230_4521285_4521395_4521495_4522441_4522496_4522955_4523055_4523593_4523648_4524116_4524171_4524501_4524556_4524875_4524930_4525881_4525927_4527054_4527154_4528305_4528414_4529067_4529122_4530171_4530226_4530956_4531011_4531103_4531158_4531237_4531346_4531894_4531949_4532743_4532798_4533741_4533904_4534580_4534689_4535380_4535489_4535830_4535885_4535975_4536084_4536207_4536262_4536596_4536705_4537172_4537227_4537349_4537458_4537777_4538037_4538625_4538811_4539462_4539706_4540515
ENSMUSG00000029669.15_0	chr6	-	2370	8	ISM	ENSMUSG00000029669.15	ENSMUST00000031678.10	2490	9	355	3	9	-3	3prime_fragment	TRUE	canonical	2	5	junction_4	1.8070158058105	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGATGGTTTGCGTATT	-5	True	NA	NA	False	AATAAA	-11	NA	21852159	21771396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_21772936_21795576_21795721_21799877_21799986_21806237_21806313_21835386_21835523_21836411_21836495_21851008_21851145_21852010
ENSMUSG00000029670.13_0	chr6	+	2634	12	FSM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	3	1163	3	-28	multi-exon	FALSE	canonical	3	104	junction_1	20.5043837280255	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATAATTTTGTTTTTA	NA	False	NA	-6	True	NA	NA	NA	21949572	21974874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
ENSMUSG00000029670.13_1	chr6	+	2217	11	NIC	ENSMUSG00000029670.13	novel	3800	12	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	44.129468612255	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAACTTGTATTTAT	NA	False	NA	8	True	AATAAA	-8	NA	21949572	21974529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_21949793_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
ENSMUSG00000029670.13_3	chr6	+	2079	11	ISM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	457	1508	8	0	3prime_fragment	FALSE	canonical	3	141	junction_5	14.2562267097574	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAACTTGTATTTAT	1	True	NA	8	True	AATAAA	-8	NA	21950026	21974529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
ENSMUSG00000029672.17_0	chr6	-	2784	10	FSM	ENSMUSG00000029672.17	ENSMUST00000165576.8	2826	10	24	18	24	-18	multi-exon	FALSE	canonical	3	400	junction_3	15.4416464292006	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATCTTTAACACTGACG	-20	True	NA	-18	True	ATTAAA	-4	NA	22356141	22306536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22343264_22343319_22355993
ENSMUSG00000029672.17_1	chr6	-	1605	1	ISM	ENSMUSG00000029672.17	ENSMUST00000165576.8	2826	10	48034	8	21324	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTGACGTGTAGTAGTT	NA	False	NA	-8	True	ATTAAA	-14	NA	22308131	22306526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_22306500_22308100
ENSMUSG00000029672.17_6	chr6	-	2748	9	NIC	ENSMUSG00000029672.17	novel	2826	10	NA	NA	-28	-8	combination_of_known_splicesites	FALSE	canonical	3	18	junction_6	132.259924013285	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTGACGTGTAGTAGTT	-4	True	NA	-8	True	ATTAAA	-14	NA	22356125	22306526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22339271_22339377_22343264_22343319_22355993
ENSMUSG00000029673.20_1	chr5	-	2276	1	ISM	ENSMUSG00000029673.20	ENSMUST00000161226.11	7410	19	1103566	171	16083	-171	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAGAAAAAAAAAAA	8066	False	NA	NA	False	NA	NA	NA	131468617	131466341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_131466300_131468600
ENSMUSG00000029673.20_10	chr5	-	5727	15	NIC	ENSMUSG00000029673.20	novel	3572	17	NA	NA	-161	-3	combination_of_known_junctions	FALSE	canonical	2	3	junction_10	16.5278058842346	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTTCCAGATGTTTCTT	NA	False	NA	-8	True	ATTAAA	-11	NA	131567005	131466173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_131469532_131472293_131472517_131474236_131474321_131475644_131475723_131480721_131480864_131486676_131486749_131488964_131488995_131490119_131490192_131494869_131494966_131499251_131499297_131501075_131501318_131503760_131504015_131505390_131505863_131562659_131562712_131566498
ENSMUSG00000029673.20_12	chr5	-	6212	14	NIC	ENSMUSG00000029673.20	novel	3572	17	NA	NA	-12	-6	combination_of_known_splicesites	FALSE	canonical	3	10	junction_9	12.2285919687616	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAGCTTCCAGATGTTT	NA	False	NA	-11	True	ATTAAA	-8	NA	131567538	131466176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_131469532_131472293_131472517_131474236_131474321_131475644_131475723_131480721_131480864_131486676_131486749_131488964_131488995_131490119_131490192_131494869_131494966_131501075_131501318_131503760_131504015_131505390_131505863_131562659_131562712_131566498
ENSMUSG00000029673.20_19	chr5	-	3272	2	ISM	ENSMUSG00000029673.20	ENSMUST00000161374.8	4217	14	95147	-1790	12321	-175	3prime_fragment	FALSE	canonical	3	58	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATGTAAAAAAAAGAAAAAAA	0	True	NA	NA	False	NA	NA	NA	131472379	131466345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_131469532_131472293
ENSMUSG00000029673.20_5	chr5	-	5894	14	FSM	ENSMUSG00000029673.20	ENSMUST00000161374.8	4217	14	282	-1959	282	-6	multi-exon	FALSE	canonical	3	21	junction_11	11.7397821618248	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAGCTTCCAGATGTTT	NA	False	NA	-11	True	ATTAAA	-8	NA	131567244	131466176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_131469532_131472293_131472517_131474236_131474321_131475644_131475723_131480721_131480864_131486676_131486749_131488964_131488995_131490119_131490192_131494869_131494966_131501096_131501318_131503760_131504012_131505390_131505863_131562659_131562712_131566498
ENSMUSG00000029673.20_6	chr5	-	6209	14	NIC	ENSMUSG00000029673.20	novel	4217	14	NA	NA	-12	-6	combination_of_known_splicesites	FALSE	canonical	3	10	junction_9	14.1989248697083	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAGCTTCCAGATGTTT	NA	False	NA	-11	True	ATTAAA	-8	NA	131567538	131466176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_131469532_131472293_131472517_131474236_131474321_131475644_131475723_131480721_131480864_131486676_131486749_131488964_131488995_131490119_131490192_131494869_131494966_131501075_131501318_131503760_131504012_131505390_131505863_131562659_131562712_131566498
ENSMUSG00000029673.20_8	chr5	-	6004	14	NIC	ENSMUSG00000029673.20	novel	4217	14	NA	NA	10	-171	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	9.03379584978658	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	131567516	131466341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_131469532_131472293_131472517_131474236_131474321_131475644_131475723_131480721_131480864_131486676_131486749_131488964_131488995_131490119_131490192_131494869_131494966_131501096_131501318_131503760_131504015_131505390_131505863_131562659_131562712_131566498
ENSMUSG00000029674.14_0	chr5	-	3331	16	FSM	ENSMUSG00000029674.14	ENSMUST00000015137.10	3331	16	-14	14	-14	-13	multi-exon	FALSE	canonical	2	10	junction_14	3.46794848097065	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCGGGGCTTGCATCCTCG	5752	False	NA	-14	True	AATAAA	-19	NA	134717466	134684906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134686240_134686346_134686505_134686762_134686819_134688700_134688858_134690646_134690713_134690956_134691017_134693038_134693171_134694060_134694148_134694683_134694868_134697767_134697935_134698043_134698150_134699171_134699379_134701524_134701635_134701865_134702005_134715497_134715595_134717194
ENSMUSG00000029674.14_12	chr5	-	1849	7	ISM	ENSMUSG00000029674.14	ENSMUST00000111233.8	3109	15	14045	13	2	-13	3prime_fragment	FALSE	canonical	3	14	junction_3	2.08166599946613	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCGGGGCTTGCATCCTCG	9963	False	NA	-14	True	AATAAA	-19	NA	134693057	134684906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_134686240_134686346_134686505_134686762_134686819_134688700_134688858_134690646_134690713_134690956_134691017_134693038
ENSMUSG00000029674.14_14	chr5	-	2342	10	ISM	ENSMUSG00000029674.14	ENSMUST00000111233.8	3109	15	9239	0	-590	0	3prime_fragment	FALSE	canonical	2	14	junction_3	1.82574185835055	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCGTGTGTGTGTCTGA	5955	False	NA	-1	True	AATAAA	-32	NA	134697863	134684893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_134686240_134686346_134686505_134686762_134686819_134688700_134688858_134690646_134690713_134690956_134691017_134693038_134693171_134694060_134694148_134694683_134694868_134697767
ENSMUSG00000029674.14_2	chr5	-	1116	1	ISM	ENSMUSG00000029674.14	ENSMUST00000015137.10	3331	16	31443	1	7050	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCGTGTGTGTGTCTGA	2635	False	NA	-1	True	AATAAA	-32	NA	134686009	134684893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_134684900_134686000
ENSMUSG00000029674.14_7	chr5	-	2451	11	NIC	ENSMUSG00000029674.14	novel	3109	15	NA	NA	-547	-13	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	6.82715167547931	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCGGGGCTTGCATCCTCG	5998	False	NA	-14	True	AATAAA	-19	NA	134697820	134684906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_134686240_134686346_134686505_134686762_134686819_134688700_134688858_134690242_134690408_134690646_134690713_134690956_134691017_134693038_134693171_134694060_134694148_134694683_134694868_134697767
ENSMUSG00000029674.14_9	chr5	-	2029	8	ISM	ENSMUSG00000029674.14	ENSMUST00000111233.8	3109	15	12988	0	-1055	0	3prime_fragment	FALSE	canonical	2	14	junction_3	1.92724822331886	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCGTGTGTGTGTCTGA	9704	False	NA	-1	True	AATAAA	-32	NA	134694114	134684893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_134686240_134686346_134686505_134686762_134686819_134688700_134688858_134690646_134690713_134690956_134691017_134693038_134693171_134694060
ENSMUSG00000029676.16_0	chr6	-	2864	17	NIC	ENSMUSG00000029676.16	novel	3151	18	NA	NA	0	-209	combination_of_known_junctions	FALSE	canonical	3	22	junction_14	31.693847983481	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATTTTTGTGTCTGTGTG	4	True	NA	-7	True	AATAAA	-13	NA	25809194	25743944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25800282_25800510_25805873_25805941_25809173
ENSMUSG00000029676.16_1	chr6	-	2934	18	FSM	ENSMUSG00000029676.16	ENSMUST00000115330.8	3151	18	8	209	-2	-209	multi-exon	FALSE	canonical	3	94	junction_8	16.939542404853	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATTTTTGTGTCTGTGTG	8	True	NA	-7	True	AATAAA	-13	NA	25809217	25743944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
ENSMUSG00000029676.16_11	chr6	-	2891	17	ISM	ENSMUSG00000029676.16	ENSMUST00000115330.8	3151	18	3284	209	3253	-209	3prime_fragment	TRUE	canonical	3	94	junction_8	16.9925305281468	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATTTTTGTGTCTGTGTG	3309	False	NA	-7	True	AATAAA	-13	NA	25805941	25743944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873
ENSMUSG00000029676.16_7	chr6	-	2236	12	ISM	ENSMUSG00000029676.16	ENSMUST00000166445.8	1923	15	22269	-635	22269	-209	3prime_fragment	FALSE	canonical	3	94	junction_8	17.9434373002711	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATTTTTGTGTCTGTGTG	NA	False	NA	-7	True	AATAAA	-13	NA	25775747	25743944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523
ENSMUSG00000029681.13_0	chr5	+	1643	6	FSM	ENSMUSG00000029681.13	ENSMUST00000031692.12	1758	6	104	11	-2	-11	multi-exon	FALSE	canonical	3	254	junction_5	29.6445610525776	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTTAGTACTTGACAGC	8773	False	NA	18	True	ATTAAA	-13	NA	135197240	135210698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135197453_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
ENSMUSG00000029681.13_2	chr5	+	553	3	FSM	ENSMUSG00000029681.13	ENSMUST00000111187.10	564	3	3	8	3	-8	multi-exon	FALSE	canonical	3	101	junction_2	118	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAAATCCTAAAGTGTC	8778	False	NA	NA	False	NA	NA	NA	135197245	135202294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135197453_135199940_135200017_135202024
ENSMUSG00000029684.15_0	chr6	-	4311	11	FSM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	28	13	7	-13	multi-exon	FALSE	canonical	3	160	junction_7	20.1893536300695	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAGTATAAAATAGTGTG	19	True	NA	NA	False	AATAAA	-14	NA	24664980	24613816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_24616346_24618271_24618381_24619183_24619702_24624234_24624389_24625052_24625096_24626692_24626862_24629923_24629948_24633835_24633933_24634570_24634658_24637647_24637783_24664534
ENSMUSG00000029684.15_3	chr6	-	2816	3	ISM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	45647	13	8711	-13	3prime_fragment	FALSE	canonical	3	185	junction_2	7.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAGTATAAAATAGTGTG	240	False	NA	NA	False	AATAAA	-14	NA	24619361	24613816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_24616346_24618271_24618381_24619183
ENSMUSG00000029684.15_4	chr6	-	1691	1	ISM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	49501	13	12565	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAGTATAAAATAGTGTG	4094	False	NA	NA	False	AATAAA	-14	NA	24615507	24613816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_24613800_24615500
ENSMUSG00000029686.16_1	chr6	+	3041	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	9	8	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTTGCATTTGGTTTTG	NA	False	NA	16	True	AATAAA	-21	NA	47430846	47503000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
ENSMUSG00000029686.16_14	chr6	+	3060	22	FSM	ENSMUSG00000029686.16	ENSMUST00000031697.9	3161	22	28	73	28	8	multi-exon	FALSE	canonical	3	398	junction_1	65.0983905600956	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTTGCATTTGGTTTTG	NA	False	NA	16	True	AATAAA	-21	NA	47431281	47503000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_47431418_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
ENSMUSG00000029687.17_0	chr6	-	2638	20	FSM	ENSMUSG00000029687.17	ENSMUST00000081721.13	2787	20	7	142	7	38	multi-exon	FALSE	canonical	3	406	junction_7	166.792654135859	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATCACTTGTCCTAG	NA	False	NA	-20	True	AATAAA	-17	NA	47571957	47507214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
ENSMUSG00000029687.17_2	chr6	-	2512	19	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	7	38	combination_of_known_junctions	FALSE	canonical	3	443	junction_6	133.55213528621	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATCACTTGTCCTAG	NA	False	NA	-20	True	AATAAA	-17	NA	47571957	47507214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
ENSMUSG00000029687.17_5	chr6	-	2484	19	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	8	38	combination_of_known_junctions	TRUE	canonical	3	225	junction_16	191.882044849961	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATCACTTGTCCTAG	NA	False	NA	-20	True	AATAAA	-17	NA	47571956	47507214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
ENSMUSG00000029687.17_6	chr6	-	2611	20	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	7	38	combination_of_known_junctions	FALSE	canonical	3	225	junction_17	211.360085807553	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATCACTTGTCCTAG	NA	False	NA	-20	True	AATAAA	-17	NA	47571957	47507214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
ENSMUSG00000029695.14_0	chr6	-	3395	24	FSM	ENSMUSG00000029695.14	ENSMUST00000031707.14	3701	24	-28	334	-28	-334	multi-exon	TRUE	canonical	0	0	junction_6	3.81024387829681	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCATTTCTCTTGAGTT	NA	False	NA	NA	False	AGTAAA	-13	NA	23133013	23072505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_23073090_23074526_23074704_23075160_23075250_23075739_23075856_23077077_23077174_23078826_23078995_23091197_23091339_23092263_23092373_23092462_23092574_23093894_23094022_23094188_23094311_23096824_23096893_23097141_23097202_23107138_23107251_23107615_23107739_23109425_23109575_23113424_23113553_23113674_23113754_23114839_23114987_23115086_23115155_23118668_23118754_23120875_23121053_23122511_23122737_23132879
ENSMUSG00000029695.14_4	chr6	-	1212	6	ISM	ENSMUSG00000029695.14	ENSMUST00000031707.14	3701	24	54009	334	48603	-334	3prime_fragment	FALSE	canonical	2	9	junction_1	1.6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCATTTCTCTTGAGTT	6207	False	NA	NA	False	AGTAAA	-13	NA	23078976	23072505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_23073090_23074526_23074704_23075160_23075250_23075739_23075856_23077077_23077174_23078826
ENSMUSG00000029699.14_1	chr5	-	2810	11	NIC	ENSMUSG00000029699.14	novel	2745	11	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	4.80520551069359	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTTTAACTGAGGTCAT	NA	False	NA	-8	True	AATAAA	-15	NA	136003378	135989077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_135990063_135990742_135990821_135991776_135992089_135992209_135992285_135993472_135993551_135994424_135994740_135994928_135995007_135996591_135996898_135997077_135997114_135999035_135999320_136003115
ENSMUSG00000029699.14_2	chr5	-	1792	6	ISM	ENSMUSG00000029699.14	ENSMUST00000111152.8	2745	11	8661	3	38	-2	3prime_fragment	FALSE	canonical	1	2	junction_4	5.05964425626941	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTCTTTTAACTGAGGTC	NA	False	NA	-10	True	AATAAA	-13	NA	135994690	135989079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_135990063_135990742_135990821_135991776_135992089_135992209_135992285_135993472_135993551_135994424
ENSMUSG00000029699.14_8	chr5	-	2779	11	FSM	ENSMUSG00000029699.14	ENSMUST00000111152.8	2745	11	-27	-7	7	-5	multi-exon	TRUE	canonical	1	1	junction_8	4.62709412050371	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGAGGTCATTGTTTGAG	NA	False	NA	0	True	AATAAA	-23	NA	136003378	135989069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135990063_135990742_135990821_135991776_135992089_135992209_135992285_135993472_135993551_135994424_135994740_135994928_135995007_135996591_135996898_135997077_135997114_135999035_135999281_136003115
ENSMUSG00000029701.16_0	chr6	-	2695	19	FSM	ENSMUSG00000029701.16	ENSMUST00000007993.16	4465	19	325	1445	325	121	multi-exon	FALSE	canonical	3	173	junction_12	24.6131175505167	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACCTTTTTAACATT	0	True	NA	-22	True	AATATA	-26	NA	29164680	29125019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29135406_29135566_29137577_29137643_29138501_29138638_29139551_29139626_29143552_29143663_29152280_29152354_29154752_29154893_29155025_29155189_29157066_29157139_29158168_29158262_29158845_29158922_29159654_29159750_29160035_29160195_29164489
ENSMUSG00000029701.16_16	chr6	-	1442	8	ISM	ENSMUSG00000029701.16	ENSMUST00000169214.8	1923	12	16460	-121	-7329	121	3prime_fragment	FALSE	canonical	3	180	junction_7	24.4857309551535	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACCTTTTTAACATT	NA	False	NA	-22	True	AATATA	-26	NA	29138630	29125019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29135406_29135566_29137577_29137643_29138501
ENSMUSG00000029703.11_2	chr5	-	2124	15	FSM	ENSMUSG00000029703.11	ENSMUST00000006301.11	2473	15	51	298	-1	-3	multi-exon	FALSE	canonical	3	342	junction_8	23.380722043284	526	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCCAGTGGGAAATGA	6735	False	NA	-14	True	ATTAAA	-16	NA	136164877	136151923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164725
ENSMUSG00000029705.18_0	chr5	-	2867	23	FSM	ENSMUSG00000029705.18	ENSMUST00000176745.8	2831	23	-39	3	-25	-3	multi-exon	FALSE	canonical	3	74	junction_13	14.4244970693081	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGGGGTCTTTTATTCT	NA	False	NA	-4	True	AATAAA	-15	NA	136596157	136276991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355787_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
ENSMUSG00000029705.18_1	chr5	-	2954	23	NIC	ENSMUSG00000029705.18	novel	2831	23	NA	NA	-34	-3	combination_of_known_junctions	FALSE	canonical	2	13	junction_13	22.7204080541869	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGGGGTCTTTTATTCT	NA	False	NA	-4	True	AATAAA	-15	NA	136596166	136276991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355865_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
ENSMUSG00000029705.18_2	chr5	-	2895	23	FSM	ENSMUSG00000029705.18	ENSMUST00000176216.9	2821	23	-77	3	-47	-3	multi-exon	FALSE	canonical	3	30	junction_13	19.9470373118581	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGGGGTCTTTTATTCT	NA	False	NA	-4	True	AATAAA	-15	NA	136596179	136276991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355793_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
ENSMUSG00000029705.18_23	chr5	-	5540	24	NIC	ENSMUSG00000029705.18	novel	4882	24	NA	NA	-16	-28	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	48.5465496798929	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCACATATTTTTTAACAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	136596360	136302951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_136304321_136308283_136308549_136311721_136311911_136315614_136315918_136333576_136333634_136334302_136334469_136336612_136337449_136338600_136338703_136340348_136340415_136341496_136342169_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355787_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
ENSMUSG00000029708.10_0	chr6	-	3767	3	NNC	ENSMUSG00000029708.10	novel	2859	3	NA	NA	6	-594	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	22.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGAGCTGTGTTTTCTTA	-7	True	NA	-6	True	ATTAAA	-9	NA	28421717	28416683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_28419300_28420283_28421382_28421664
ENSMUSG00000029708.10_1	chr6	-	4050	2	FSM	ENSMUSG00000029708.10	ENSMUST00000090511.4	4650	2	10	590	10	-590	multi-exon	FALSE	canonical	3	46	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGTGTTTTCTTAATGG	-3	True	NA	-2	True	ATTAAA	-13	NA	28421713	28416679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_28419300_28420283
ENSMUSG00000029708.10_2	chr6	-	1730	1	ISM	ENSMUSG00000029708.10	ENSMUST00000090511.4	4650	2	3381	523	2515	-523	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAAAAGGCTAGATATAT	3368	False	NA	65	True	AATAAA	-6	NA	28418342	28416612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_28416600_28418300
ENSMUSG00000029710.16_1	chr5	+	4313	17	FSM	ENSMUSG00000029710.16	ENSMUST00000061244.15	4340	17	2	25	2	-17	multi-exon	FALSE	canonical	3	265	junction_1	33.7925657504724	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGGGATATGTCTCAGT	NA	False	NA	2	True	AATAAA	-5	NA	137348372	137372765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137348912_137352350_137352422_137352541_137352830_137355803_137356201_137358626_137358783_137359395_137359729_137360651_137360777_137361420_137361587_137363209_137363313_137363714_137363780_137363885_137364000_137364802_137365051_137367974_137368191_137368972_137369123_137370285_137370480_137370646_137370803_137371773
ENSMUSG00000029710.16_2	chr5	+	4342	17	FSM	ENSMUSG00000029710.16	ENSMUST00000111055.9	4296	17	-61	15	2	-15	multi-exon	FALSE	canonical	3	39	junction_6	71.8852166651809	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGGATATGTCTCAGTCC	NA	False	NA	4	True	AATAAA	-7	NA	137348372	137372767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137348912_137352350_137352422_137352541_137352830_137355803_137356201_137358626_137358783_137359395_137359729_137360624_137360777_137361420_137361587_137363209_137363313_137363714_137363780_137363885_137364000_137364802_137365051_137367974_137368191_137368972_137369123_137370285_137370480_137370646_137370803_137371773
ENSMUSG00000029710.16_27	chr5	+	3188	14	ISM	ENSMUSG00000029710.16	ENSMUST00000166239.8	3741	18	7340	-194	7257	-16	3prime_fragment	FALSE	canonical	3	269	junction_5	35.0490780167251	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGGGATATGTCTCAGTC	5606	False	NA	3	True	AATAAA	-6	NA	137356031	137372766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_137356201_137358626_137358783_137359395_137359729_137360651_137360777_137361420_137361587_137363209_137363313_137363714_137363780_137363885_137364000_137364802_137365051_137367974_137368191_137368972_137369123_137370285_137370480_137370646_137370803_137371773
ENSMUSG00000029713.16_0	chr5	-	1593	10	FSM	ENSMUSG00000029713.16	ENSMUST00000031726.15	1860	10	264	3	-15	1	multi-exon	FALSE	canonical	3	634	junction_9	47.0030206541801	670	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCTAGTCTCCTTGCTTA	1796	False	NA	-8	True	CATAAA	-19	NA	137531508	137526391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137526872_137526952_137527170_137527265_137527468_137527704_137527772_137527864_137528028_137528107_137528172_137528445_137528553_137528659_137528699_137528956_137529103_137531400
ENSMUSG00000029714.12_15	chr5	+	5974	27	Fusion	ENSMUSG00000029714.12_ENSMUSG00000106237.2	novel	5440	24	NA	NA	186	-6	multi-exon	TRUE	canonical	0	0	junction_23	18.3778552102844	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTACCTTGTCTGCCAGC	NA	False	NA	23	True	AATAAA	-18	NA	137508700	137526191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr5_+_137508883_137515646_137515874_137516743_137516875_137517139_137517249_137517344_137517475_137517571_137517668_137517767_137517880_137517998_137518108_137518289_137518331_137518473_137518639_137518808_137519063_137519146_137519265_137520109_137520245_137520384_137520486_137520639_137520812_137520922_137521090_137521216_137521318_137521398_137521519_137521663_137521765_137522060_137522144_137522223_137522371_137522450_137522676_137522912_137523104_137523192_137523354_137523433_137523622_137523691_137523822_137523913
ENSMUSG00000029714.12_53	chr5	+	2888	5	ISM	ENSMUSG00000029714.12	ENSMUST00000031727.10	5440	24	5837	2	5837	-2	3prime_fragment	FALSE	canonical	0	0	junction_1	36.9349089615773	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGTCTGCCAGCTTTT	5507	False	NA	27	True	AATAAA	-22	NA	137522976	137526195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_137523104_137523192_137523354_137523433_137523622_137523691_137523822_137523913
ENSMUSG00000029714.12_61	chr5	+	1690	1	ISM	ENSMUSG00000029714.12	ENSMUST00000031727.10	5440	24	7363	5	7363	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTACCTTGTCTGCCAGCT	7033	False	NA	24	True	AATAAA	-19	NA	137524502	137526192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_137524500_137526200
ENSMUSG00000029715.6_0	chr5	-	788	2	FSM	ENSMUSG00000029715.6	ENSMUST00000031728.5	881	2	92	1	-1	-1	multi-exon	FALSE	canonical	3	320	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCGGGCTTCGAATGGCCT	1731	False	NA	-34	True	AATAAA	-18	NA	137500688	137499701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137500342_137500540
ENSMUSG00000029715.6_1	chr5	-	752	1	FSM	ENSMUSG00000029715.6	ENSMUST00000111035.2	988	1	235	1	235	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCTTCGAATGGCCTC	1967	False	NA	-33	True	AATAAA	-19	NA	137500452	137499700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137499700_137500500
ENSMUSG00000029716.14_0	chr5	+	3056	19	FSM	ENSMUSG00000029716.14	ENSMUST00000198866.5	3072	19	0	16	0	-2	multi-exon	FALSE	canonical	0	0	junction_1	2.65099562009781	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTGTCCATACGCAATT	3567	False	NA	NA	False	AATAAA	-13	NA	137568101	137585725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137568381_137569249_137569304_137569538_137569786_137569875_137570054_137572648_137572790_137572869_137572982_137573075_137573199_137575719_137575837_137575927_137576068_137577140_137577305_137578428_137578549_137580850_137580934_137581019_137581084_137581180_137581249_137581335_137581413_137581492_137581578_137581666_137581895_137582187_137582329_137585090
ENSMUSG00000029716.14_3	chr5	+	2618	17	ISM	ENSMUSG00000029716.14	ENSMUST00000198783.5	2973	18	578	12	-68	-1	3prime_fragment	FALSE	canonical	1	1	junction_5	2.24913177693082	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGTCCATACGCAATTT	5110	False	NA	NA	False	AATAAA	-14	NA	137569644	137585726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_137569786_137569875_137570054_137572648_137572790_137572869_137572982_137573075_137573199_137575719_137575837_137575927_137576068_137577140_137577305_137578428_137578549_137580850_137580934_137581019_137581084_137581180_137581249_137581335_137581413_137581492_137581578_137581666_137581895_137582187_137582329_137585090
ENSMUSG00000029718.15_1	chr5	-	1526	8	ISM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	824	7	39	-2	3prime_fragment	FALSE	canonical	3	423	junction_6	64.4265124789793	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGGGATCGTGTCTGAG	4847	False	NA	-9	True	AATAAA	-14	NA	137608925	137603371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658
ENSMUSG00000029718.15_14	chr5	-	1201	6	ISM	ENSMUSG00000029718.15	ENSMUST00000054564.13	1585	10	3096	2	-88	-2	3prime_fragment	FALSE	canonical	3	504	junction_5	47.2245698762837	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGGGATCGTGTCTGAG	7230	False	NA	-9	True	AATAAA	-14	NA	137606542	137603371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216
ENSMUSG00000029718.15_2	chr5	-	1536	9	FSM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	83	7	4	-2	multi-exon	FALSE	canonical	3	231	junction_8	116.165560731225	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGGGATCGTGTCTGAG	4106	False	NA	-9	True	AATAAA	-14	NA	137609666	137603371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658_137608768_137609498
ENSMUSG00000029718.15_3	chr5	-	1057	7	ISM	ENSMUSG00000029718.15	ENSMUST00000054564.13	1585	10	2703	2	-481	-2	3prime_fragment	FALSE	canonical	3	52	junction_6	194.602729226037	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGGGATCGTGTCTGAG	6837	False	NA	-9	True	AATAAA	-14	NA	137606935	137603371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137606878
ENSMUSG00000029720.10_0	chr5	+	4456	22	FSM	ENSMUSG00000029720.10	ENSMUST00000177545.2	4464	22	5	3	5	-3	multi-exon	FALSE	canonical	3	204	junction_21	33.9740463834439	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGGCTGTCTGCAGTG	2243	False	NA	20	True	AATAAA	-12	NA	137627441	137641158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUSG00000029720.10_16	chr5	+	1218	5	FSM	ENSMUSG00000079165.11	ENSMUST00000166099.3	1101	5	-123	6	-20	-3	multi-exon	FALSE	canonical	3	204	junction_4	13.4976849866931	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGGCTGTCTGCAGTG	1081	False	NA	20	True	AATAAA	-12	NA	137639575	137641158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUSG00000029720.10_19	chr5	+	1417	3	FSM	ENSMUSG00000079165.11	ENSMUST00000176256.2	414	3	-649	-354	-39	-1	multi-exon	FALSE	canonical	3	204	junction_2	6.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGTCTGCAGTGGGACA	1062	False	NA	25	True	AATAAA	-17	NA	137639556	137641163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137640497_137640602_137640701_137640784
ENSMUSG00000029720.10_2	chr5	+	4313	23	NIC	ENSMUSG00000029720.10	novel	4464	22	NA	NA	-17	-3	combination_of_known_splicesites	FALSE	canonical	3	122	junction_18	45.8170093645083	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGGCTGTCTGCAGTG	2221	False	NA	20	True	AATAAA	-12	NA	137627419	137641158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209_137639819_137639983_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUSG00000029722.16_0	chr5	-	2878	13	FSM	ENSMUSG00000029722.16	ENSMUST00000100544.11	2858	13	-21	1	-8	-1	multi-exon	FALSE	canonical	3	27	junction_7	43.0686628794327	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	1789	False	NA	NA	False	NA	NA	NA	137682963	137648747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137658423_137658457_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
ENSMUSG00000029722.16_1	chr5	-	2839	12	NIC	ENSMUSG00000029722.16	novel	2893	12	NA	NA	-8	-4	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	39.6263540321879	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGATTAAAAAAAAAAAAAA	1789	False	NA	NA	False	NA	NA	NA	137682963	137648750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137659625_137659752_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
ENSMUSG00000029722.16_4	chr5	-	2839	12	FSM	ENSMUSG00000029722.16	ENSMUST00000031736.16	2893	12	26	28	-7	-6	multi-exon	FALSE	canonical	3	93	junction_6	17.5678142969908	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGGATTAAAAAAAAAAAA	1790	False	NA	NA	False	NA	NA	NA	137682962	137648752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
ENSMUSG00000029722.16_8	chr5	-	2715	11	NIC	ENSMUSG00000029722.16	novel	2893	12	NA	NA	-7	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	44.2361842839095	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	1790	False	NA	NA	False	NA	NA	NA	137682962	137648747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
ENSMUSG00000029723.17_0	chr5	+	2234	5	FSM	ENSMUSG00000029723.17	ENSMUST00000100539.10	3983	5	86	1663	86	197	multi-exon	FALSE	canonical	3	319	junction_1	32.7595405950694	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATATGGAGGTTGGTGTG	NA	False	NA	9	True	ATTAAA	-20	NA	137744343	137758007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137744677_137745109_137746122_137749469_137749631_137756945_137756995_137757328
ENSMUSG00000029723.17_2	chr5	+	1390	4	ISM	ENSMUSG00000029723.17	ENSMUST00000100539.10	3983	5	1363	1663	1363	197	3prime_fragment	FALSE	canonical	3	331	junction_1	27.9404127862612	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATATGGAGGTTGGTGTG	NA	False	NA	9	True	ATTAAA	-20	NA	137745620	137758007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_137746122_137749469_137749631_137756945_137756995_137757328
ENSMUSG00000029725.11_0	chr5	+	654	4	NIC	ENSMUSG00000029725.11	novel	430	3	NA	NA	-27	-1	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	179.735608294208	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAATTACCGAACTGTTCT	NA	False	NA	0	True	AATAAA	-13	NA	137777138	137778367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_137777160_137777563_137777808_137777887_137778025_137778115
ENSMUSG00000029725.11_2	chr5	+	1030	3	ISM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	13	4	13	0	intron_retention	FALSE	canonical	3	301	junction_1	64	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTACCGAACTGTTCTT	NA	False	NA	1	True	AATAAA	-14	NA	137777178	137778368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_137777484_137777563_137777808_137777887
ENSMUSG00000029725.11_3	chr5	+	1094	2	FSM	ENSMUSG00000029725.11	ENSMUST00000152298.2	476	2	-622	4	18	0	multi-exon	FALSE	canonical	3	393	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTACCGAACTGTTCTT	NA	False	NA	1	True	AATAAA	-14	NA	137777183	137778368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137778025_137778115
ENSMUSG00000029725.11_4	chr5	+	937	4	FSM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	15	4	15	0	multi-exon	FALSE	canonical	3	301	junction_1	53.8970211504206	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTACCGAACTGTTCTT	NA	False	NA	1	True	AATAAA	-14	NA	137777180	137778368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137777484_137777563_137777808_137777887_137778025_137778115
ENSMUSG00000029725.11_5	chr5	+	1190	1	NIC	ENSMUSG00000029725.11	novel	956	4	NA	NA	12	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAATTACCGAACTGTTCT	NA	False	NA	0	True	AATAAA	-13	NA	137777177	137778367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_137777200_137778400
ENSMUSG00000029725.11_9	chr5	+	634	3	ISM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	397	5	-136	-1	3prime_fragment	FALSE	canonical	3	393	junction_2	18	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAATTACCGAACTGTTCT	NA	False	NA	0	True	AATAAA	-13	NA	137777562	137778367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_137777808_137777887_137778025_137778115
ENSMUSG00000029726.17_0	chr5	-	2749	4	FSM	ENSMUSG00000029726.17	ENSMUST00000031740.16	3128	4	377	2	377	-2	multi-exon	FALSE	canonical	3	137	junction_2	12.2474487139159	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTGTCCAGCACTTTC	3103	False	NA	-8	True	AATAAA	-27	NA	137784548	137780169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137780747_137780856_137780984_137781391_137781611_137782722
ENSMUSG00000029726.17_1	chr5	-	3895	3	ISM	ENSMUSG00000029726.17	ENSMUST00000031740.16	3128	4	342	3	342	-3	intron_retention	FALSE	canonical	3	137	junction_2	15	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTGTGTCCAGCACTTT	3068	False	NA	-9	True	AATAAA	-26	NA	137784583	137780170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137780747_137780856_137780984_137781391
ENSMUSG00000029729.13_0	chr5	+	5083	6	FSM	ENSMUSG00000029729.13	ENSMUST00000019660.11	8261	6	21	3157	-15	173	multi-exon	FALSE	canonical	2	7	junction_4	2.63818119165458	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGAGTACCTCGGTGT	NA	False	NA	NA	False	AGTAAA	-26	NA	138083366	138102927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138083494_138091181_138091695_138092253_138092402_138095328_138095421_138095714_138095842_138098851
ENSMUSG00000029729.13_2	chr5	+	4856	4	FSM	ENSMUSG00000029729.13	ENSMUST00000066617.12	8042	4	29	3157	-7	173	multi-exon	FALSE	canonical	2	3	junction_3	5.09901951359278	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGAGTACCTCGGTGT	NA	False	NA	NA	False	AGTAAA	-26	NA	138083374	138102927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138083494_138091181_138091695_138092253_138092402_138098851
ENSMUSG00000029729.13_4	chr5	+	3385	1	FSM	ENSMUSG00000106102.2	ENSMUST00000199837.2	202	1	-2477	-706	-2477	706	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGAATTTGTTTTAAAT	5042	False	NA	-4	True	NA	NA	NA	138102691	138106076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138102700_138106100
ENSMUSG00000029730.17_1	chr5	-	2382	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	564	16	-40	1	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	3541	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCTTGTTAATAACTCTG	2280	False	NA	-24	True	AATAAA	-16	NA	138170120	138162860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
ENSMUSG00000029735.18_1	chr6	-	2585	9	FSM	ENSMUSG00000029735.18	ENSMUST00000067888.14	2671	9	85	1	-18	-1	multi-exon	FALSE	canonical	3	33	junction_1	3.903123748999	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAGCAATGCTGTGGTAT	NA	False	NA	-7	True	ATTAAA	-18	NA	43643127	43321935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
ENSMUSG00000029735.18_11	chr6	-	2852	7	NIC	ENSMUSG00000029735.18	novel	2671	9	NA	NA	-189	-11	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	16.9254903096549	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGACTTCAGATAGCAAT	NA	False	NA	-17	True	ATTAAA	-8	NA	43603089	43321945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43500817_43500891_43588247_43588320_43602626
ENSMUSG00000029735.18_17	chr6	-	2271	8	FSM	ENSMUSG00000029735.18	ENSMUST00000114644.8	2148	8	11	-134	11	-67	multi-exon	FALSE	canonical	0	0	junction_2	15.0319387862467	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTAGTTGGTTTGTC	NA	False	NA	NA	False	AATAAA	-16	NA	43643098	43322073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_43323835_43400554_43400667_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
ENSMUSG00000029735.18_18	chr6	-	2389	8	NIC	ENSMUSG00000029735.18	novel	2671	9	NA	NA	11	-68	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	14.6524358913807	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTCTGTAGTTGGTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	43643142	43322074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43642693_43642752_43643069
ENSMUSG00000029735.18_2	chr6	-	2934	8	NIC	ENSMUSG00000029735.18	novel	2671	9	NA	NA	-192	-2	combination_of_known_splicesites	FALSE	canonical	3	12	junction_7	11.1721227405812	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATAGCAATGCTGTGGTA	NA	False	NA	-8	True	ATTAAA	-17	NA	43603092	43321936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43602626
ENSMUSG00000029735.18_3	chr6	-	1537	1	Genic_Genomic	ENSMUSG00000029735.18	novel	NA	NA	NA	NA	129986	3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATGCTGTGGTATTAAG	NA	False	NA	-3	True	ATTAAA	-22	NA	43323468	43321931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_43321900_43323500
ENSMUSG00000029735.18_4	chr6	-	2876	7	NIC	ENSMUSG00000029735.18	novel	2671	9	NA	NA	-206	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	17.2570436505085	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAGCAATGCTGTGGTAT	NA	False	NA	-7	True	ATTAAA	-18	NA	43603106	43321935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43536876_43536947_43588247_43588320_43602626
ENSMUSG00000029735.18_7	chr6	-	2517	8	ISM	ENSMUSG00000029735.18	ENSMUST00000067888.14	2671	9	461	11	64	-11	3prime_fragment	FALSE	canonical	3	33	junction_1	4.16986271980755	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGACTTCAGATAGCAAT	NA	False	NA	-17	True	ATTAAA	-8	NA	43642751	43321945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693
ENSMUSG00000029735.18_8	chr6	-	2595	7	NIC	ENSMUSG00000029735.18	novel	2148	8	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	17.7521516692735	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAGCAATGCTGTGGTAT	NA	False	NA	-7	True	ATTAAA	-18	NA	43602899	43321935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_43323835_43400554_43400667_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43602626
ENSMUSG00000029752.13_0	chr6	-	1949	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	49	3	49	-3	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	10490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCCTCCTGGTTGTGGG	9	True	NA	-12	True	AATAAA	-14	NA	7693205	7675171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ENSMUSG00000029752.13_5	chr6	-	1854	11	ISM	ENSMUSG00000029752.13	ENSMUST00000115542.8	2016	12	3346	3	2697	-3	3prime_fragment	FALSE	canonical	3	8132	junction_7	334.52026844423	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCCTCCTGGTTGTGGG	5296	False	NA	-12	True	AATAAA	-14	NA	7689525	7675171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251
ENSMUSG00000029759.10_1	chr6	-	1782	9	FSM	ENSMUSG00000029759.10	ENSMUST00000031773.9	1837	9	55	0	2	0	multi-exon	FALSE	canonical	3	12	junction_4	13.4350288425444	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATGAAAAAAAATATATG	21	True	NA	NA	False	AATAAA	-43	NA	5256231	5220851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5236871_5236999_5240812_5240979_5246277_5246334_5254515_5254587_5256152
ENSMUSG00000029759.10_3	chr6	-	834	7	NIC	ENSMUSG00000029759.10	novel	1837	9	NA	NA	-1	-658	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	15.5715195861619	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGGAACTGTAATTATTT	18	True	NA	NA	False	AGTAAA	-18	NA	5256234	5221509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5246277_5246334_5254515_5254587_5256152
ENSMUSG00000029759.10_7	chr6	-	979	5	FSM	ENSMUSG00000029759.10	ENSMUST00000156848.8	921	5	-15	-43	4	43	multi-exon	FALSE	canonical	3	13	junction_1	12.871965661856	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGATTACCTTAAGTGT	23	True	NA	NA	False	AATAAA	-29	NA	5256229	5236389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_5236999_5240812_5240979_5246277_5246334_5254515_5254587_5256152
ENSMUSG00000029759.10_8	chr6	-	1862	4	NIC	ENSMUSG00000029759.10	novel	921	5	NA	NA	2	1090	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	20.9814733091416	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAACAAAAACACAA	21	True	NA	NA	False	NA	NA	NA	5256231	5235342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_5236999_5246277_5246334_5254515_5254587_5256152
ENSMUSG00000029761.17_0	chr6	+	3986	12	FSM	ENSMUSG00000029761.17	ENSMUST00000115021.8	4041	12	48	7	0	0	multi-exon	FALSE	canonical	3	149	junction_3	28.0630930241598	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTCTGTCTCGTGCA	1305	False	NA	25	True	AATAAA	-43	NA	34686424	34752401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750157
ENSMUSG00000029761.17_2	chr6	+	3992	12	NNC	ENSMUSG00000029761.17	novel	4041	12	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_11	60.9202160803188	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTCTGTCTCGTGCA	1302	False	NA	25	True	AATAAA	-43	NA	34686421	34752401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750154
ENSMUSG00000029761.17_27	chr6	+	1652	1	ISM	ENSMUSG00000029761.17	ENSMUST00000115027.8	4777	15	175251	0	8859	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTCTGTCTCGTGCA	4199	False	NA	25	True	AATAAA	-43	NA	34750749	34752401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_34750700_34752400
ENSMUSG00000029761.17_8	chr6	+	1625	3	ISM	ENSMUSG00000029761.17	ENSMUST00000031775.13	2142	13	-142	26804	2	4682	5prime_fragment	FALSE	canonical	3	208	junction_2	9	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATGAATTA	1307	False	NA	NA	False	AAGAAA	-34	NA	34686426	34723825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_34686633_34718723_34718871_34722553
ENSMUSG00000029762.7_0	chr6	+	1281	10	FSM	ENSMUSG00000029762.7	ENSMUST00000038406.7	1358	10	59	18	59	-18	multi-exon	FALSE	canonical	2	5	junction_2	1.94999208608714	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAATGTATCCAACACGT	NA	False	NA	NA	False	AATAAA	-14	NA	34331112	34345380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_34331232_34333190_34333359_34334395_34334513_34335065_34335144_34340266_34340390_34340656_34340764_34341171_34341254_34342141_34342226_34342837_34342921_34345060
ENSMUSG00000029763.18_1	chr6	+	4769	18	FSM	ENSMUSG00000029763.18	ENSMUST00000052266.15	4824	18	51	4	0	-4	multi-exon	FALSE	canonical	3	107	junction_11	15.4671210608191	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATATCGTATGTTGTTTT	NA	False	NA	16	True	ATTAAA	-18	NA	33226070	33950910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33309145_33309390_33324717_33324893_33415314_33415461_33418885_33418975_33556916_33557014_33734901_33735122_33792608_33792746_33815909_33816066_33838995_33839175_33887422_33887565_33895335_33895515_33898312_33898473_33948848
ENSMUSG00000029763.18_24	chr6	+	3930	13	ISM	ENSMUSG00000029763.18	ENSMUST00000052266.15	4824	18	83182	4	-88	-4	3prime_fragment	FALSE	canonical	3	107	junction_6	15.8978946894095	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATATCGTATGTTGTTTT	NA	False	NA	16	True	ATTAAA	-18	NA	33309201	33950910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_33309390_33324717_33324893_33415314_33415461_33418885_33418975_33556916_33557014_33734901_33735122_33792608_33792746_33815909_33816066_33838995_33839175_33887422_33887565_33895335_33895515_33898312_33898473_33948848
ENSMUSG00000029763.18_25	chr6	+	3633	12	ISM	ENSMUSG00000029763.18	ENSMUST00000052266.15	4824	18	98807	4	14475	-4	3prime_fragment	FALSE	canonical	3	107	junction_5	15.8630502626816	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATATCGTATGTTGTTTT	NA	False	NA	16	True	ATTAAA	-18	NA	33324826	33950910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_33324893_33415314_33415461_33418885_33418975_33556916_33557014_33734901_33735122_33792608_33792746_33815909_33816066_33838995_33839175_33887422_33887565_33895335_33895515_33898312_33898473_33948848
ENSMUSG00000029763.18_38	chr6	+	1597	1	ISM	ENSMUSG00000029763.18	ENSMUST00000052266.15	4824	18	723295	3	110280	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATCGTATGTTGTTTTT	8013	False	NA	17	True	ATTAAA	-19	NA	33949314	33950911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_33949300_33950900
ENSMUSG00000029767.17_0	chr6	+	3180	7	FSM	ENSMUSG00000029767.17	ENSMUST00000090481.14	2670	7	28	-538	28	-5	multi-exon	FALSE	canonical	3	300	junction_2	301.970979105977	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGGGCTTATGTGTCTT	-6	True	NA	110	True	AATAAA	-14	NA	29348145	29376666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29348208_29356469_29356697_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ENSMUSG00000029767.17_1	chr6	+	3180	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	41	8	28	-5	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	1156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGGGCTTATGTGTCTT	-6	True	NA	110	True	AATAAA	-14	NA	29348145	29376666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ENSMUSG00000029767.17_25	chr6	+	3116	6	ISM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	8363	12	-2	-9	3prime_fragment	FALSE	canonical	3	608	junction_1	165.608453890494	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATCAAGGGCTTATGTG	8288	False	NA	106	True	AATAAA	-10	NA	29356467	29376662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ENSMUSG00000029767.17_35	chr6	+	1740	1	ISM	ENSMUSG00000029767.17	ENSMUST00000172974.8	3063	6	26859	5	1262	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGGGCTTATGTGTCTT	448	False	NA	110	True	AATAAA	-14	NA	29374926	29376666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_29374900_29376700
ENSMUSG00000029769.17_0	chr6	+	3850	18	FSM	ENSMUSG00000029769.18	ENSMUST00000096084.13	3894	18	35	9	-20	-5	multi-exon	FALSE	canonical	0	0	junction_15	2.99249349222986	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTACACGAGACATTGTGT	-9	True	NA	NA	False	ATTAAA	-10	NA	29396608	29426942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29396742_29397477_29397586_29399199_29399449_29399533_29399609_29405869_29406191_29409223_29409336_29410072_29410242_29411246_29411385_29411708_29411868_29412362_29412534_29412900_29413087_29414784_29414980_29415429_29415655_29417070_29417578_29417930_29418153_29419100_29419383_29419985_29420265_29426623
ENSMUSG00000029769.17_5	chr6	+	2878	13	NIC	ENSMUSG00000029769.18	novel	3356	15	NA	NA	9	1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	2.64049658629248	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAGACATTGTGTGACTTT	-20	True	NA	NA	False	ATTAAA	-16	NA	29402876	29426948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_29403025_29405869_29406191_29409223_29409336_29410072_29410242_29411246_29411385_29411708_29411868_29412362_29412534_29412900_29413087_29414784_29414980_29415429_29415655_29417070_29417578_29417930_29418153_29426623
ENSMUSG00000029771.13_1	chr6	+	2121	9	FSM	ENSMUSG00000029771.13	ENSMUST00000004392.12	2189	9	61	7	-22	-7	multi-exon	FALSE	canonical	3	5	junction_7	3.25720355519885	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCAGGTCTGCCCATT	0	True	NA	NA	False	AATAAA	-5	NA	29526684	29537311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29526774_29531124_29531331_29533950_29534141_29534533_29534593_29535039_29535074_29535251_29535510_29535723_29536117_29536202_29536322_29536538
ENSMUSG00000029772.18_31	chr6	+	2312	1	ISM	ENSMUSG00000029772.18	ENSMUST00000102995.9	5155	17	141511	2	6485	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGATCTGTGTCCTGA	NA	False	NA	1	True	AATAAA	-9	NA	29909989	29912301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_29910000_29912300
ENSMUSG00000029772.18_4	chr6	+	5137	17	FSM	ENSMUSG00000029772.18	ENSMUST00000115242.9	5152	17	7	8	1	-2	multi-exon	FALSE	canonical	3	14	junction_1	29.2814334305887	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGATCTGTGTCCTGA	-10	True	NA	1	True	AATAAA	-9	NA	29768497	29912301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29768906_29863138_29863251_29870566_29870711_29871184_29871286_29878527_29878631_29880547_29880643_29883621_29883729_29886116_29886234_29890679_29890744_29891199_29891289_29894817_29894889_29896320_29896416_29903187_29903287_29906506_29906576_29906679_29906759_29908345_29908467_29909038
ENSMUSG00000029772.18_7	chr6	+	5130	17	FSM	ENSMUSG00000029772.18	ENSMUST00000102995.9	5155	17	23	2	5	-2	multi-exon	FALSE	canonical	3	86	junction_2	15.2883738507403	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGATCTGTGTCCTGA	-6	True	NA	1	True	AATAAA	-9	NA	29768501	29912301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29768906_29863141_29863251_29870566_29870711_29871184_29871286_29878527_29878631_29880547_29880643_29883621_29883729_29886116_29886234_29890679_29890744_29891199_29891289_29894817_29894889_29896320_29896416_29903187_29903287_29906506_29906576_29906679_29906759_29908345_29908467_29909038
ENSMUSG00000029775.15_0	chr6	+	2052	9	FSM	ENSMUSG00000029775.15	ENSMUST00000068240.13	3951	9	31	1868	3	579	multi-exon	FALSE	canonical	3	93	junction_1	36.2954456509353	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTTCTGAACTTCCCTTG	-18	True	NA	20	True	ATTAAA	-27	NA	30401897	30451419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_30402150_30439642_30439865_30441775_30441931_30444425_30444575_30446616_30446702_30447409_30447477_30447939_30447988_30449489_30449630_30450485
ENSMUSG00000029775.15_1	chr6	+	2131	10	FSM	ENSMUSG00000029775.15	ENSMUST00000068259.10	5901	10	8	3762	8	576	multi-exon	TRUE	canonical	3	95	junction_2	43.3720624650147	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCAGTTCTGAACTTCCC	-13	True	NA	17	True	ATTAAA	-24	NA	30401902	30451416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_30402150_30427707_30427795_30439642_30439865_30441775_30441931_30444425_30444575_30446616_30446702_30447409_30447477_30447939_30447988_30449489_30449630_30450485
ENSMUSG00000029775.15_14	chr6	+	3356	1	ISM	ENSMUSG00000029775.15	ENSMUST00000068259.10	5901	10	49922	6	8048	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGTCCAAGTTGCCATG	NA	False	NA	25	True	AATAAA	-12	NA	30451816	30455172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_30451800_30455200
ENSMUSG00000029776.12_0	chr6	-	1749	8	FSM	ENSMUSG00000029776.12	ENSMUST00000031788.9	1825	8	68	8	-6	-8	multi-exon	FALSE	canonical	3	833	junction_5	85.7178570684555	876	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACATTTTTTTGGAGCTT	2907	False	NA	-9	True	AATAAA	-12	NA	52617306	52523220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597084_52599835_52599946_52607173_52607335_52617145
ENSMUSG00000029777.11_0	chr6	+	2370	17	FSM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	0	10	0	-10	multi-exon	FALSE	canonical	0	0	junction_11	747.261037786495	4181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTATAATCCATCTGTT	NA	False	NA	25	True	ATTAAA	-19	NA	55014991	55056475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045154_55046325_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
ENSMUSG00000029780.15_0	chr6	-	1614	9	FSM	ENSMUSG00000029780.15	ENSMUST00000031793.8	1676	9	39	23	-3	-23	multi-exon	FALSE	canonical	3	204	junction_8	16.5486970786222	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAGAAAGCTTTTCTA	1243	False	NA	-23	True	AATAAA	-3	NA	56900878	56859407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56900656
ENSMUSG00000029780.15_4	chr6	-	1695	10	FSM	ENSMUSG00000029780.15	ENSMUST00000152447.9	1067	10	-82	-546	-11	-5	multi-exon	FALSE	canonical	3	11	junction_9	88.9986821930458	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATTCTGTTGTCCAGAT	1235	False	NA	-5	True	AATAAA	-21	NA	56900886	56859389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56900656
ENSMUSG00000029780.15_5	chr6	-	1459	10	FSM	ENSMUSG00000029780.15	ENSMUST00000101367.9	1519	10	-29	89	-29	-89	multi-exon	FALSE	canonical	2	7	junction_9	89.8419737478734	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAACTGTTGGTGTCCGC	9805	False	NA	-7	True	TATAAA	-26	NA	56878900	56859473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56878822
ENSMUSG00000029781.8_0	chr6	+	2944	10	FSM	ENSMUSG00000029781.8	ENSMUST00000031795.8	3009	10	58	7	58	-7	multi-exon	FALSE	canonical	3	670	junction_6	57.9369602069757	1394	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATATCATCTGGCTTTA	NA	False	NA	29	True	CATAAA	-7	NA	56809101	56856336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_56809413_56826622_56826769_56827547_56827738_56828346_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
ENSMUSG00000029782.21_1	chr6	-	2272	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	67	1146	0	41	multi-exon	FALSE	canonical	3	776	junction_14	62.8738614129878	1548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATTAAACTTTTGGGT	4	True	NA	23	True	ATTAAA	-9	NA	30509715	30482372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
ENSMUSG00000029782.21_9	chr6	-	2204	14	ISM	ENSMUSG00000029782.21	ENSMUST00000115157.8	2273	15	915	-4	901	4	3prime_fragment	FALSE	canonical	3	922	junction_8	37.2406217097062	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTTGAAAGGTCAATGCT	945	False	NA	-14	True	ATTAAA	-20	NA	30508802	30482409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664
ENSMUSG00000029787.11_0	chr6	+	6664	16	FSM	ENSMUSG00000029787.11	ENSMUST00000031805.11	6670	16	4	2	4	-2	multi-exon	FALSE	canonical	3	71	junction_4	11.3247025960459	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACGGGCTATTGATCTCC	NA	False	NA	41	True	AATAAA	-19	NA	56691915	56738895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_56692200_56700460_56700582_56702060_56702147_56703235_56703308_56705172_56705263_56705581_56705649_56706704_56706746_56707626_56707666_56712347_56712418_56713422_56713962_56718353_56718489_56720316_56720537_56723265_56723384_56730349_56730404_56730822_56730912_56734256
ENSMUSG00000029787.11_1	chr6	+	6696	16	NIC	ENSMUSG00000029787.11	novel	6670	16	NA	NA	-3	-8	combination_of_known_junctions	FALSE	canonical	2	3	junction_8	26.2039861259483	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGCACACGGGCTATTG	NA	False	NA	35	True	AATAAA	-13	NA	56691908	56738889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_56692200_56700460_56700582_56702060_56702147_56703235_56703308_56705172_56705263_56705581_56705649_56706704_56706746_56707626_56707697_56712347_56712418_56713422_56713962_56718353_56718489_56720316_56720537_56723265_56723384_56730349_56730404_56730822_56730912_56734256
ENSMUSG00000029787.11_20	chr6	+	5696	7	ISM	ENSMUSG00000029787.11	ENSMUST00000031805.11	6670	16	21610	1	-4376	-1	3prime_fragment	FALSE	canonical	3	86	junction_2	11.066716867356	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGGGCTATTGATCTCCT	NA	False	NA	42	True	AATAAA	-20	NA	56713521	56738896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_56713962_56718353_56718489_56720316_56720537_56723265_56723384_56730349_56730404_56730822_56730912_56734256
ENSMUSG00000029787.11_23	chr6	+	3044	1	ISM	ENSMUSG00000029787.11	ENSMUST00000031805.11	6670	16	43941	1	17955	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGGGCTATTGATCTCCT	NA	False	NA	42	True	AATAAA	-20	NA	56735852	56738896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_56735900_56738900
ENSMUSG00000029787.11_5	chr6	+	6079	8	NIC	ENSMUSG00000029787.11	novel	6670	16	NA	NA	4	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	35.8466119994168	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGGGCTATTGATCTCCT	NA	False	NA	42	True	AATAAA	-20	NA	56691915	56738896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_56692200_56713422_56713962_56718353_56718489_56720316_56720537_56723265_56723384_56730349_56730404_56730822_56730912_56734256
ENSMUSG00000029790.17_1	chr6	-	3403	11	FSM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	39	5	-10	-3	multi-exon	TRUE	canonical	3	75	junction_8	9.18095855561934	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATTTGTCGTTTGCTAT	-2	True	NA	-5	True	ATTAAA	-11	NA	30693709	30653460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
ENSMUSG00000029790.17_13	chr6	-	1157	1	ISM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	39131	5	2191	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATTTGTCGTTTGCTAT	NA	False	NA	-5	True	ATTAAA	-11	NA	30654617	30653460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_30653500_30654600
ENSMUSG00000029790.17_5	chr6	-	3369	11	NNC	ENSMUSG00000029790.17	novel	3447	11	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	26.0624250598443	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATTTGTCGTTTGCTAT	-7	True	NA	-5	True	ATTAAA	-11	NA	30693714	30653460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_30655850_30656477_30656694_30657335_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
ENSMUSG00000029790.17_6	chr6	-	3351	10	NIC	ENSMUSG00000029790.17	novel	3447	11	NA	NA	-10	-7	combination_of_known_splicesites	FALSE	canonical	2	2	junction_8	29.8295569718325	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTACTAATTTGTCGTTTG	-2	True	NA	-9	True	ATTAAA	-7	NA	30693709	30653464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30680129_30680194_30693635
ENSMUSG00000029802.14_0	chr6	+	2228	17	NNC	ENSMUSG00000029802.14	novel	5717	16	NA	NA	-37	-66	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	52.4486355875918	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATATCCAGTGTTCTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	58572922	58669430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_58573003_58573993_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUSG00000029802.14_10	chr6	+	2549	16	FSM	ENSMUSG00000029802.14	ENSMUST00000031822.13	5717	16	-62	3230	-62	-65	multi-exon	FALSE	canonical	3	51	junction_1	36.1961323900773	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATATCCAGTGTTCTTTTC	NA	False	NA	11	True	ATTAAA	-18	NA	58573593	58669431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUSG00000029802.14_13	chr6	+	2128	16	FSM	ENSMUSG00000029802.14	ENSMUST00000114294.8	2178	16	-13	63	5	-63	multi-exon	FALSE	canonical	3	106	junction_1	24.9849732617205	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCCAGTGTTCTTTTCTT	NA	False	NA	13	True	ATTAAA	-20	NA	58617535	58669433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUSG00000029802.14_14	chr6	+	2205	17	NIC	ENSMUSG00000029802.14	novel	2178	16	NA	NA	5	67	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	58.2246457696395	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACCATATCCAGTGTTCT	NA	False	NA	7	True	ATTAAA	-14	NA	58617535	58669427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_58617613_58627445_58627529_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUSG00000029802.14_2	chr6	+	2263	17	NIC	ENSMUSG00000029802.14	novel	5717	16	NA	NA	-38	-66	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	52.6289710496985	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATATCCAGTGTTCTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	58572921	58669430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_58573003_58573959_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUSG00000029802.14_7	chr6	+	2116	16	NIC	ENSMUSG00000029802.14	novel	600	5	NA	NA	-25	-66	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	43.6165106353087	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATATCCAGTGTTCTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	58572934	58669430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_58573003_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUSG00000029804.18_0	chr6	+	5108	25	NIC	ENSMUSG00000029804.18	novel	3596	23	NA	NA	13	-6	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	7.34551544973001	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAACAGTTTGTATTGTA	NA	False	NA	7	True	AATAAA	-15	NA	58808462	58897377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_58808918_58820588_58820844_58831857_58832018_58832722_58832800_58833577_58833800_58834679_58834772_58835937_58836069_58837236_58837398_58839957_58840035_58845626_58845752_58847138_58847199_58850718_58850831_58851195_58851386_58853473_58853638_58853752_58853867_58861934_58861959_58862052_58862143_58864392_58864564_58865604_58865749_58867052_58867220_58871032_58871100_58871526_58871610_58893396_58893581_58893766_58893870_58895697
ENSMUSG00000029804.18_2	chr6	+	5240	26	NIC	ENSMUSG00000029804.18	novel	3596	23	NA	NA	13	-9	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	8.031537835309	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTAAAACAGTTTGTATT	NA	False	NA	4	True	AATAAA	-12	NA	58808462	58897374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_58808918_58809386_58809522_58820588_58820844_58831857_58832018_58832722_58832800_58833577_58833800_58834679_58834772_58835937_58836069_58837236_58837398_58839957_58840035_58845626_58845752_58847138_58847199_58850718_58850831_58851195_58851386_58853473_58853638_58853752_58853867_58861934_58861959_58862052_58862143_58864392_58864564_58865604_58865749_58867052_58867220_58871032_58871100_58871526_58871610_58893396_58893581_58893766_58893870_58895697
ENSMUSG00000029804.18_20	chr6	+	3075	13	ISM	ENSMUSG00000029804.18	ENSMUST00000041401.11	4731	25	40619	4	-24	-4	3prime_fragment	FALSE	canonical	3	33	junction_3	5.15522927607385	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGTTTGTATTGTAAT	NA	False	NA	9	True	AATAAA	-17	NA	58851303	58897379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_58851386_58853473_58853638_58853752_58853867_58861934_58861959_58862052_58862143_58864392_58864564_58865604_58865749_58867052_58867220_58871032_58871100_58871526_58871610_58893396_58893581_58893766_58893870_58895697
ENSMUSG00000029804.18_24	chr6	+	1424	1	ISM	ENSMUSG00000029804.18	ENSMUST00000041401.11	4731	25	85268	7	11706	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAACAGTTTGTATTGT	NA	False	NA	6	True	AATAAA	-14	NA	58895952	58897376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_58896000_58897400
ENSMUSG00000029804.18_5	chr6	+	4947	26	NIC	ENSMUSG00000029804.18	novel	418	4	NA	NA	16	-9	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	8.96963767384168	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTAAAACAGTTTGTATT	NA	False	NA	4	True	AATAAA	-12	NA	58808465	58897374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_58808628_58809386_58809522_58820588_58820844_58831857_58832018_58832722_58832800_58833577_58833800_58834679_58834772_58835937_58836069_58837236_58837398_58839957_58840035_58845626_58845752_58847138_58847199_58850718_58850831_58851195_58851386_58853473_58853638_58853752_58853867_58861934_58861959_58862052_58862143_58864392_58864564_58865604_58865749_58867052_58867220_58871032_58871100_58871526_58871610_58893396_58893581_58893766_58893870_58895697
ENSMUSG00000029804.18_6	chr6	+	4815	25	NIC	ENSMUSG00000029804.18	novel	418	4	NA	NA	13	-9	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	8.96743723454787	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTAAAACAGTTTGTATT	NA	False	NA	4	True	AATAAA	-12	NA	58808462	58897374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_58808628_58820588_58820844_58831857_58832018_58832722_58832800_58833577_58833800_58834679_58834772_58835937_58836069_58837236_58837398_58839957_58840035_58845626_58845752_58847138_58847199_58850718_58850831_58851195_58851386_58853473_58853638_58853752_58853867_58861934_58861959_58862052_58862143_58864392_58864564_58865604_58865749_58867052_58867220_58871032_58871100_58871526_58871610_58893396_58893581_58893766_58893870_58895697
ENSMUSG00000029814.11_0	chr6	-	4173	15	FSM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	167	5	-86	-5	multi-exon	FALSE	canonical	3	409	junction_14	48.9016610043012	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACCACAGCTTCTGTAG	NA	False	NA	-29	True	AATAAA	-10	NA	49191724	49062161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
ENSMUSG00000029814.11_2	chr6	-	1595	1	ISM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	128137	3	7391	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCACAGCTTCTGTAGTA	9985	False	NA	-27	True	AATAAA	-12	NA	49063754	49062159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_49062200_49063800
ENSMUSG00000029814.11_6	chr6	-	3773	14	ISM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	1536	5	740	-5	3prime_fragment	FALSE	canonical	3	468	junction_8	38.3789883342713	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACCACAGCTTCTGTAG	NA	False	NA	-29	True	AATAAA	-10	NA	49190355	49062161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200
ENSMUSG00000029814.11_8	chr6	-	3937	15	NIC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	259	-5	combination_of_known_junctions	FALSE	canonical	3	24	junction_14	136.261752910061	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACCACAGCTTCTGTAG	NA	False	NA	-29	True	AATAAA	-10	NA	49190836	49062161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49190578
ENSMUSG00000029815.13_0	chr6	+	536	3	FSM	ENSMUSG00000029815.13	ENSMUST00000114500.3	2587	3	4	2047	4	26	multi-exon	FALSE	canonical	3	89	junction_1	380.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTCCCTTTGATATGAC	352	False	NA	5	True	AATAAA	-14	NA	49050785	49061638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_49051038_49059778_49059861_49061436
ENSMUSG00000029815.13_1	chr6	+	718	4	FSM	ENSMUSG00000029815.13	ENSMUST00000128616.6	2819	4	54	2047	1	26	multi-exon	FALSE	canonical	3	781	junction_1	29.2232783924049	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTCCCTTTGATATGAC	349	False	NA	5	True	AATAAA	-14	NA	49050782	49061638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_49051038_49052019_49052199_49059778_49059861_49061436
ENSMUSG00000029815.13_3	chr6	+	2117	2	FSM	ENSMUSG00000029815.13	ENSMUST00000205243.2	720	2	-227	-1170	-1	26	multi-exon	FALSE	canonical	3	89	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTCCCTTTGATATGAC	347	False	NA	5	True	AATAAA	-14	NA	49050780	49061638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_49051038_49059778
ENSMUSG00000029815.13_5	chr6	+	2289	3	ISM	ENSMUSG00000029815.13	ENSMUST00000128616.6	2819	4	53	2053	0	20	intron_retention	FALSE	canonical	3	781	junction_1	9	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCATTCTTCCCTTTGA	348	False	NA	-1	True	AATAAA	-8	NA	49050781	49061632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_49051038_49052019_49052199_49059778
ENSMUSG00000029816.11_0	chr6	+	2266	11	FSM	ENSMUSG00000029816.11	ENSMUST00000031840.10	3701	11	33	1402	-17	-1402	multi-exon	FALSE	canonical	3	59	junction_4	6.96347614342147	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCTGTGTGATTATTA	NA	False	NA	NA	False	ATTAAA	-11	NA	49013581	49033714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_49013727_49019700_49019854_49020930_49021075_49022238_49022413_49024227_49024387_49024669_49025036_49027343_49027443_49027957_49028061_49028751_49028961_49032554_49032649_49033094
ENSMUSG00000029816.11_1	chr6	+	1246	4	ISM	ENSMUSG00000029816.11	ENSMUST00000031840.10	3701	11	-2	12109	-2	-2278	5prime_fragment	FALSE	canonical	3	70	junction_1	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGGTCTACATGTCTGT	NA	False	NA	NA	False	AATACA	-43	NA	49013546	49023007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_49013727_49019700_49019854_49020930_49021075_49022238
ENSMUSG00000029816.11_10	chr6	+	1589	7	ISM	ENSMUSG00000029816.11	ENSMUST00000031840.10	3701	11	10740	1402	-69	-1402	3prime_fragment	FALSE	canonical	3	68	junction_2	6.23609564462324	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCTGTGTGATTATTA	1311	False	NA	NA	False	ATTAAA	-11	NA	49024288	49033714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_49024387_49024669_49025036_49027343_49027443_49027957_49028061_49028751_49028961_49032554_49032649_49033094
ENSMUSG00000029816.11_6	chr6	+	2029	10	ISM	ENSMUSG00000029816.11	ENSMUST00000031840.10	3701	11	6244	1402	-4565	-1402	3prime_fragment	FALSE	canonical	3	59	junction_3	7.25888132047159	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCTGTGTGATTATTA	NA	False	NA	NA	False	ATTAAA	-11	NA	49019792	49033714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_49019854_49020930_49021075_49022238_49022413_49024227_49024387_49024669_49025036_49027343_49027443_49027957_49028061_49028751_49028961_49032554_49032649_49033094
ENSMUSG00000029816.11_9	chr6	+	1770	8	ISM	ENSMUSG00000029816.11	ENSMUST00000031840.10	3701	11	8744	1402	-2065	-1402	3prime_fragment	FALSE	canonical	3	59	junction_1	8.2065180664829	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCTGTGTGATTATTA	NA	False	NA	NA	False	ATTAAA	-11	NA	49022292	49033714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_49022413_49024227_49024387_49024669_49025036_49027343_49027443_49027957_49028061_49028751_49028961_49032554_49032649_49033094
ENSMUSG00000029817.12_0	chr6	-	1800	8	FSM	ENSMUSG00000029817.12	ENSMUST00000031841.9	1799	8	-1	0	-1	0	multi-exon	FALSE	canonical	3	256	junction_7	100.796420409392	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4592	False	NA	-8	True	AATAAA	-11	NA	49240965	49220861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ENSMUSG00000029817.12_11	chr6	-	3021	7	ISM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	10081	4	10080	0	intron_retention	FALSE	canonical	3	375	junction_6	71.4531703674201	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	5745	False	NA	-8	True	AATAAA	-11	NA	49230864	49220861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315
ENSMUSG00000029817.12_13	chr6	-	1793	8	FSM	ENSMUSG00000029817.12	ENSMUST00000204189.3	1777	8	-20	4	0	0	multi-exon	FALSE	canonical	3	74	junction_2	153.460491492044	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4593	False	NA	-8	True	AATAAA	-11	NA	49240964	49220861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_49221666_49221801_49221870_49222415_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ENSMUSG00000029817.12_17	chr6	-	2392	8	NIC	ENSMUSG00000029817.12	novel	1799	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	123	junction_7	139.301024799547	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4593	False	NA	-8	True	AATAAA	-11	NA	49240964	49220861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49230043_49240771
ENSMUSG00000029817.12_26	chr6	-	1220	5	ISM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	14929	4	14928	0	3prime_fragment	FALSE	canonical	3	425	junction_3	65.2495210710393	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	NA	False	NA	-8	True	AATAAA	-11	NA	49226016	49220861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919
ENSMUSG00000029817.12_3	chr6	-	985	3	ISM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	18423	4	18422	0	3prime_fragment	FALSE	canonical	3	544	junction_2	21.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	NA	False	NA	-8	True	AATAAA	-11	NA	49222522	49220861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_49221666_49221801_49221870_49222409
ENSMUSG00000029817.12_5	chr6	-	2112	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_7	180.182372889248	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4592	False	NA	-8	True	AATAAA	-11	NA	49240965	49220861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229730_49230043_49240771
ENSMUSG00000029817.12_7	chr6	-	382	1	ISM	ENSMUSG00000029817.12	ENSMUST00000204189.3	1777	8	19701	4	19701	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	NA	False	NA	-8	True	AATAAA	-11	NA	49221243	49220861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_49220900_49221200
ENSMUSG00000029821.16_0	chr6	-	1370	1	Genic_Genomic	ENSMUSG00000029821.16	novel	NA	NA	NA	NA	-8028	50	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50178523	50177153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_50177200_50178500
ENSMUSG00000029821.16_2	chr6	-	2132	10	FSM	ENSMUSG00000029821.16	ENSMUST00000170142.8	2133	10	0	1	0	-1	multi-exon	FALSE	canonical	3	41	junction_4	6.09998988058258	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTAGTTGGCTGTTCTA	8766	False	NA	-3	True	ATTAAA	-15	NA	50238749	50184383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255_50228494_50238713
ENSMUSG00000029821.16_3	chr6	-	2096	9	ISM	ENSMUSG00000029821.16	ENSMUST00000170142.8	2133	10	10255	2	10233	-2	3prime_fragment	FALSE	canonical	3	41	junction_4	6.36396103067893	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTAGTTGGCTGTTCT	NA	False	NA	-4	True	ATTAAA	-14	NA	50228494	50184384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255
ENSMUSG00000029822.16_0	chr6	-	6091	19	ISM	ENSMUSG00000029822.16	ENSMUST00000090019.10	4039	22	18296	-2354	38	-3	3prime_fragment	TRUE	canonical	3	5	junction_11	3.63835874000732	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGCTGCCTTTGTCTTTG	NA	False	NA	-6	True	AATAAA	-10	NA	50328899	50270312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50310165_50310274_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823
ENSMUSG00000029822.16_1	chr6	-	3370	23	NIC	ENSMUSG00000029822.16	novel	3307	22	NA	NA	13	-2	combination_of_known_junctions	FALSE	canonical	2	5	junction_22	3.69861488480697	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTAATGTGTGGGTTAC	NA	False	NA	NA	False	AATAAA	-13	NA	50433128	50273786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102_50347339_50405308_50405401_50432804
ENSMUSG00000029822.16_4	chr6	-	4517	24	NIC	ENSMUSG00000029822.16	novel	4039	22	NA	NA	0	-94	combination_of_known_junctions	FALSE	canonical	2	5	junction_11	3.96439732175821	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTAAGCCTTTGACTCG	NA	False	NA	NA	False	ATTAAA	-12	NA	50433141	50272760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50310165_50310274_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102_50347339_50405308_50405401_50432804
ENSMUSG00000029822.16_6	chr6	-	3421	1	ISM	ENSMUSG00000029822.16	ENSMUST00000114468.9	6494	22	86079	8	3596	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCAAAGGCTGCCTTTGT	NA	False	NA	-11	True	AATAAA	-5	NA	50273738	50270317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_50270300_50273700
ENSMUSG00000029822.16_7	chr6	-	3271	22	NIC	ENSMUSG00000029822.16	novel	3307	22	NA	NA	20	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_21	4.35863882723768	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTAATGTGTGGGTTAC	NA	False	NA	NA	False	AATAAA	-13	NA	50433121	50273786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102_50347339_50432804
ENSMUSG00000029823.17_1	chr6	+	1643	2	FSM	ENSMUSG00000029823.17	ENSMUST00000160922.5	3448	2	-67	1872	-1	-1741	multi-exon	FALSE	canonical	3	85	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTATAGACCCAAAGTGTA	NA	False	NA	NA	False	AATAAA	-42	NA	38528398	38533112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_38528844_38531914
ENSMUSG00000029823.17_2	chr6	+	2647	10	FSM	ENSMUSG00000029823.17	ENSMUST00000057692.11	2702	10	2	53	2	-10	multi-exon	FALSE	canonical	3	38	junction_9	33.3603594142346	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAACATACTGAAACAGC	NA	False	NA	9	True	AATAAA	-11	NA	38528401	38586352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_38528844_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211_38580404_38585087
ENSMUSG00000029823.17_4	chr6	+	3338	9	ISM	ENSMUSG00000029823.17	ENSMUST00000057692.11	2702	10	2	4046	2	384	5prime_fragment	FALSE	canonical	3	65	junction_1	24.3567239176372	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTCTTGCCCTTGCTGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	38528401	38582359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_38528844_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211
ENSMUSG00000029823.17_53	chr6	+	1442	1	Genic_Genomic	ENSMUSG00000029823.17	novel	NA	NA	NA	NA	35605	781	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCATTTTAGGTGTTGAA	656	False	NA	2	True	AATAAA	-17	NA	38582641	38584083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_+_38582600_38584100
ENSMUSG00000029823.17_54	chr6	+	597	1	ISM	ENSMUSG00000029823.17	ENSMUST00000057692.11	2702	10	57360	49	38723	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATACTGAAACAGCAGTT	3774	False	NA	13	True	AATAAA	-15	NA	38585759	38586356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_38585800_38586400
ENSMUSG00000029823.17_9	chr6	+	3133	8	FSM	ENSMUSG00000029823.17	ENSMUST00000161538.8	4253	8	7	1113	7	214	multi-exon	FALSE	canonical	3	61	junction_7	31.7644391078567	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTATTTCATATCTTTG	NA	False	NA	4	True	ATTAAA	-16	NA	38528406	38582189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_38528844_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38580211
ENSMUSG00000029826.15_13	chr6	-	3351	9	FSM	ENSMUSG00000029826.15	ENSMUST00000031850.10	3400	9	45	4	45	-4	multi-exon	FALSE	canonical	3	57	junction_7	12.2212673238089	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTTGCAGTTGGATTT	9709	False	NA	-7	True	NA	NA	NA	38331493	38292606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
ENSMUSG00000029826.15_15	chr6	-	1823	6	ISM	ENSMUSG00000029826.15	ENSMUST00000031850.10	3400	9	21910	4	21580	-4	3prime_fragment	FALSE	canonical	3	66	junction_3	10.1469207151727	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTTGCAGTTGGATTT	2063	False	NA	-7	True	NA	NA	NA	38309628	38292606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076
ENSMUSG00000029826.15_18	chr6	-	2640	8	ISM	ENSMUSG00000029826.15	ENSMUST00000031850.10	3400	9	14315	4	13985	-4	3prime_fragment	FALSE	canonical	3	57	junction_7	12.8999288085364	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTTGCAGTTGGATTT	2528	False	NA	-7	True	NA	NA	NA	38317223	38292606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154
ENSMUSG00000029826.15_2	chr6	-	883	1	ISM	ENSMUSG00000029826.15	ENSMUST00000114900.8	4944	13	48068	37	48068	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAGAAAAAATAATT	NA	False	NA	-37	True	NA	NA	NA	38283140	38282257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38282300_38283100
ENSMUSG00000029826.15_4	chr6	-	5207	13	FSM	ENSMUSG00000029826.15	ENSMUST00000114900.8	4944	13	-285	22	45	-22	multi-exon	TRUE	canonical	3	16	junction_3	27.2865453210104	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTGATTCATTTGCCCT	9709	False	NA	-22	True	AATAAA	-10	NA	38331493	38282242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
ENSMUSG00000029832.17_0	chr6	+	2490	4	FSM	ENSMUSG00000029832.17	ENSMUST00000005103.12	2544	4	54	0	-25	0	multi-exon	FALSE	canonical	3	21	junction_2	2.05480466765633	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACAAAAATATTTTATTC	NA	False	NA	NA	False	AATAAA	-17	NA	51409703	51435748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_51410394_51427946_51428124_51433573_51433658_51434209
ENSMUSG00000029832.17_3	chr6	+	3060	3	FSM	ENSMUSG00000029832.17	ENSMUST00000160133.2	1125	3	-48	-1887	31	-5	multi-exon	FALSE	canonical	3	21	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACTATTACAAAAATATTT	NA	False	NA	NA	False	AATAAA	-12	NA	51409680	51435743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_51410394_51427946_51428124_51433573
ENSMUSG00000029833.18_1	chr6	+	3905	19	FSM	ENSMUSG00000029833.18	ENSMUST00000120428.8	3940	19	12	23	12	-23	multi-exon	FALSE	canonical	3	354	junction_9	66.0549014078441	925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATCAGGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	37847757	37943208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_37848410_37880467_37880587_37885151_37885300_37892099_37892233_37896308_37896426_37904460_37904576_37908288_37908436_37920347_37920466_37922455_37922623_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
ENSMUSG00000029833.18_2	chr6	+	4009	19	FSM	ENSMUSG00000029833.18	ENSMUST00000031859.14	4042	19	10	23	10	-23	multi-exon	FALSE	canonical	3	87	junction_9	112.54974208964	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATCAGGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	37847755	37943208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_37848410_37880467_37880587_37885151_37885300_37892099_37892233_37896308_37896426_37904460_37904576_37908288_37908436_37920347_37920466_37922455_37922725_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
ENSMUSG00000029833.18_62	chr6	+	3738	10	ISM	ENSMUSG00000029833.18	ENSMUST00000120238.2	3258	19	47186	-341	-886	-23	3prime_fragment	FALSE	canonical	3	465	junction_1	57.5962961772138	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATCAGGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	37924607	37943208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
ENSMUSG00000029836.16_0	chr6	+	1757	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	131	1	-2	-1	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	1348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGATGACTTTTTTTTGT	NA	False	NA	-2	True	AATAAA	-18	NA	51447640	51460683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
ENSMUSG00000029840.9_0	chr6	-	2235	1	ISM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	28586	162	28497	-162	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGATAACATGTTAGCAAC	NA	False	NA	-32	True	AATAAA	-14	NA	35488237	35486002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_35486000_35488200
ENSMUSG00000029840.9_1	chr6	-	3720	4	FSM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	78	162	-11	-162	multi-exon	FALSE	canonical	3	759	junction_3	9.97775303139718	1137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGATAACATGTTAGCAAC	4226	False	NA	-32	True	AATAAA	-14	NA	35516745	35486002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473
ENSMUSG00000029843.5_0	chr6	-	3440	16	FSM	ENSMUSG00000029843.5	ENSMUST00000031868.5	3427	16	-17	4	-17	-4	multi-exon	FALSE	canonical	2	6	junction_8	3.05213950460256	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTGCAGAGTGAGGTCT	NA	False	NA	NA	False	AATAAA	-12	NA	35285083	35244895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_35245904_35247278_35247417_35248543_35248706_35251850_35251976_35252575_35252674_35253383_35253486_35255171_35255274_35256345_35256466_35257243_35257432_35260173_35260255_35261564_35261605_35264281_35264337_35264688_35264853_35266728_35266866_35278659_35278789_35284292
ENSMUSG00000029844.10_0	chr6	-	2078	3	FSM	ENSMUSG00000029844.10	ENSMUST00000120363.2	2043	3	-34	-1	-34	1	multi-exon	FALSE	canonical	2	5	junction_2	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTATGCCTAAGCATCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	52135331	52132573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52134070_52134546_52134642_52134844
ENSMUSG00000029844.10_1	chr6	-	2261	2	FSM	ENSMUSG00000029844.10	ENSMUST00000000964.6	2251	2	-14	4	-14	1	multi-exon	FALSE	canonical	3	16	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTATGCCTAAGCATCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	52135311	52132573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52134070_52134546
ENSMUSG00000029844.10_2	chr6	-	843	1	ISM	ENSMUSG00000029844.10	ENSMUST00000000964.6	2251	2	1881	4	1881	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTATGCCTAAGCATCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	52133416	52132573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_52132600_52133400
ENSMUSG00000029847.14_0	chr6	-	2730	12	FSM	ENSMUSG00000029847.14	ENSMUST00000201355.4	2003	12	-97	-630	-97	-27	multi-exon	FALSE	canonical	2	5	junction_7	2.56808125305919	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	34965436	34922239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_34923272_34925142_34925239_34925332_34925442_34925739_34925905_34930699_34930954_34931904_34932062_34932804_34932926_34933811_34933994_34936389_34936550_34953960_34954119_34955843_34955991_34965287
ENSMUSG00000029847.14_2	chr6	-	3313	3	ISM	ENSMUSG00000029847.14	ENSMUST00000201355.4	2003	12	39797	-2605	-30	1948	3prime_fragment	FALSE	canonical	3	8	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAGAAAATGGAGCG	NA	False	NA	NA	False	AATAAA	-9	NA	34925542	34920264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_34923272_34925142_34925239_34925332
ENSMUSG00000029848.12_0	chr6	+	1463	9	FSM	ENSMUSG00000029848.12	ENSMUST00000114999.8	1455	9	-12	4	-12	-4	multi-exon	FALSE	canonical	1	14	junction_3	19.2272592950738	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGATTTTTTTGGTGTCCT	NA	False	NA	7	True	TATAAA	-12	NA	34897882	34916273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_34897990_34904653_34904852_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
ENSMUSG00000029848.12_2	chr6	+	1394	9	NIC	ENSMUSG00000029848.12	novel	1455	9	NA	NA	-12	-10	combination_of_known_junctions	FALSE	canonical	1	6	junction_2	25.8202924073295	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCAATGATTTTTTTGG	NA	False	NA	1	True	TATAAA	-6	NA	34897882	34916267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_34897990_34904653_34904789_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
ENSMUSG00000029848.12_3	chr6	+	1340	8	ISM	ENSMUSG00000029848.12	ENSMUST00000114999.8	1455	9	6769	10	6719	-10	3prime_fragment	FALSE	canonical	1	14	junction_2	20.3990796110901	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCAATGATTTTTTTGG	NA	False	NA	1	True	TATAAA	-6	NA	34904663	34916267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_34904852_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
ENSMUSG00000029848.12_9	chr6	+	1227	7	NIC	ENSMUSG00000029848.12	novel	1207	8	NA	NA	-56	-10	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	23.8607068908977	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCAATGATTTTTTTGG	NA	False	NA	1	True	TATAAA	-6	NA	34897838	34916267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_34897990_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
ENSMUSG00000029851.6_0	chr6	-	4316	8	FSM	ENSMUSG00000029851.6	ENSMUST00000031879.5	4497	8	172	9	172	-9	multi-exon	FALSE	canonical	0	0	junction_1	1.16057691494799	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATATAAATCCTGCTTTTC	NA	False	NA	NA	False	AAGAAA	-6	NA	42622016	42599958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_42601550_42603050_42603389_42604207_42604448_42604852_42605067_42605955_42606054_42606334_42607330_42619402_42620040_42621813
ENSMUSG00000029859.7_1	chr6	-	3291	18	FSM	ENSMUSG00000029859.7	ENSMUST00000073387.5	3273	18	-16	-2	-16	2	multi-exon	FALSE	canonical	0	0	junction_2	1.13454714835211	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTTCCCTTGATGTTTT	8174	False	NA	NA	False	AATAAA	-17	NA	42350218	42335418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_42335781_42335869_42336026_42337478_42337673_42337938_42338089_42338219_42338427_42338527_42338590_42338710_42338897_42339590_42339717_42340495_42340555_42340743_42340841_42341094_42341246_42341470_42341599_42341709_42342055_42342352_42342509_42342709_42343113_42344519_42344802_42349108_42349177_42350059
ENSMUSG00000029860.17_1	chr6	+	2186	10	NIC	ENSMUSG00000029860.17	novel	3076	6	NA	NA	-4	-7	intron_retention	FALSE	canonical	0	0	junction_1	10.9341463112378	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCCAGAGTTGCTAGTA	NA	False	NA	-4	True	TATAAA	-6	NA	42326709	42335319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_42326760_42327190_42327411_42327879_42328083_42328203_42328297_42328408_42328904_42332850_42332972_42333095_42333266_42333365_42333545_42334246_42334368_42334785
ENSMUSG00000029860.17_2	chr6	+	2234	10	FSM	ENSMUSG00000029860.17	ENSMUST00000203652.3	2605	10	201	170	-4	0	multi-exon	FALSE	canonical	3	26	junction_4	4.64545443563708	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTGCTAGTACTTGATT	NA	False	NA	3	True	TATAAA	-13	NA	42326962	42335326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_42327054_42327190_42327411_42327879_42328083_42328203_42328297_42328408_42328904_42332850_42332972_42333095_42333266_42333365_42333545_42334246_42334368_42334785
ENSMUSG00000029860.17_4	chr6	+	2336	9	FSM	ENSMUSG00000029860.17	ENSMUST00000070635.13	2301	9	-35	0	6	0	multi-exon	FALSE	canonical	2	6	junction_3	9.78439446261239	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTGCTAGTACTTGATT	NA	False	NA	3	True	TATAAA	-13	NA	42326767	42335326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_42327054_42327190_42327411_42327879_42328083_42328408_42328904_42332850_42332972_42333095_42333266_42333365_42333545_42334246_42334368_42334785
ENSMUSG00000029860.17_9	chr6	+	2334	9	NIC	ENSMUSG00000029860.17	novel	2605	10	NA	NA	-2	2	intron_retention	FALSE	canonical	3	26	junction_4	4.63680924774785	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGCTAGTACTTGATTTT	NA	False	NA	5	True	TATAAA	-15	NA	42326964	42335328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_42327054_42327190_42327411_42327879_42328083_42328203_42328297_42328408_42328904_42332850_42332972_42333095_42333545_42334246_42334368_42334785
ENSMUSG00000029862.17_8	chr6	+	1795	1	ISM	ENSMUSG00000029862.17	ENSMUST00000114684.8	3504	15	15056	6	1464	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGAAAGTGTACCCCAC	4176	False	NA	NA	False	AATAAA	-9	NA	42290889	42292684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_42290900_42292700
ENSMUSG00000029863.14_11	chr6	+	3666	11	ISM	ENSMUSG00000029863.14	ENSMUST00000156829.8	1439	12	-64	-2011	0	-5	intron_retention	FALSE	canonical	3	27	junction_8	35.6869724129128	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGATTTTGTGCCTGGTGT	NA	False	NA	8	True	AATAAA	-15	NA	42241989	42259437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42253803_42253865_42256710_42256861_42257017
ENSMUSG00000029863.14_2	chr6	+	3466	11	FSM	ENSMUSG00000029863.14	ENSMUST00000031895.13	3529	11	58	5	-13	-5	multi-exon	FALSE	canonical	3	71	junction_8	18.1	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGATTTTGTGCCTGGTGT	NA	False	NA	8	True	AATAAA	-15	NA	42241976	42259437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42256710_42256861_42257017_42257128_42257279
ENSMUSG00000029863.14_23	chr6	+	1678	1	ISM	ENSMUSG00000029863.14	ENSMUST00000031895.13	3529	11	15840	6	1018	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGATTTTGTGCCTGGTG	7915	False	NA	7	True	AATAAA	-14	NA	42257758	42259436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_42257800_42259400
ENSMUSG00000029863.14_3	chr6	+	3521	12	FSM	ENSMUSG00000029863.14	ENSMUST00000156829.8	1439	12	-71	-2011	-7	-5	multi-exon	FALSE	canonical	3	27	junction_8	34.7888554397801	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGATTTTGTGCCTGGTGT	NA	False	NA	8	True	AATAAA	-15	NA	42241982	42259437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42253803_42253865_42256710_42256861_42257017_42257128_42257279
ENSMUSG00000029863.14_4	chr6	+	3532	11	NIC	ENSMUSG00000029863.14	novel	3529	11	NA	NA	-21	-5	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	35.1573605380154	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGATTTTGTGCCTGGTGT	NA	False	NA	8	True	AATAAA	-15	NA	42241968	42259437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246155_42246391_42250850_42250980_42253628_42253720_42256710_42256861_42257017_42257128_42257279
ENSMUSG00000029863.14_7	chr6	+	3610	10	ISM	ENSMUSG00000029863.14	ENSMUST00000031895.13	3529	11	66	5	-5	-5	intron_retention	FALSE	canonical	3	71	junction_8	18.6309181499762	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGATTTTGTGCCTGGTGT	NA	False	NA	8	True	AATAAA	-15	NA	42241984	42259437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42256710_42256861_42257017
ENSMUSG00000029864.8_0	chr6	+	877	8	FSM	ENSMUSG00000029864.8	ENSMUST00000031897.8	930	8	52	1	-2	-1	multi-exon	FALSE	canonical	3	11	junction_5	4.42165358301205	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACAAAGCATTTCTGGGT	NA	False	NA	1	True	AATAAA	-12	NA	42222920	42227374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_42223028_42223483_42223566_42223744_42223874_42224417_42224519_42224667_42224704_42226312_42226430_42226772_42226867_42227163
ENSMUSG00000029869.8_0	chr6	+	3727	18	FSM	ENSMUSG00000029869.8	ENSMUST00000114732.3	3762	18	23	12	23	-10	multi-exon	FALSE	canonical	2	8	junction_2	4.47522978861417	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTACAAGTTGAGGTGTG	351	False	NA	1	True	ATTAAA	-13	NA	41582438	41597431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_41582755_41589577_41589650_41590148_41590353_41590685_41590751_41591012_41591776_41592422_41592579_41592850_41593202_41593393_41593519_41593681_41593845_41594197_41594313_41594560_41594614_41594780_41594901_41595001_41595250_41595504_41595679_41596164_41596315_41596540_41596735_41596856_41597013_41597129
ENSMUSG00000029869.8_1	chr6	+	3940	17	NIC	ENSMUSG00000029869.8	novel	3762	18	NA	NA	7	-5	intron_retention	TRUE	canonical	2	8	junction_2	4.60298815988049	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTGAGGTGTGTCCAT	335	False	NA	6	True	ATTAAA	-18	NA	41582422	41597436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_41582755_41589577_41589650_41590148_41590353_41590685_41590751_41591012_41591776_41592422_41592579_41592850_41593519_41593681_41593845_41594197_41594313_41594560_41594614_41594780_41594901_41595001_41595250_41595504_41595679_41596164_41596315_41596540_41596735_41596856_41597013_41597129
ENSMUSG00000029869.8_13	chr6	+	2095	12	ISM	ENSMUSG00000029869.8	ENSMUST00000114732.3	3762	18	10482	21	1272	-19	3prime_fragment	FALSE	canonical	2	10	junction_3	3.9772077916777	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAGGGAATTTACAAGT	2739	False	NA	-8	True	ATTAAA	-4	NA	41592897	41597422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_41593202_41593393_41593519_41593681_41593845_41594197_41594313_41594560_41594614_41594780_41594901_41595001_41595250_41595504_41595679_41596164_41596315_41596540_41596735_41596856_41597013_41597129
ENSMUSG00000029910.15_0	chr6	+	1319	6	FSM	ENSMUSG00000029910.15	ENSMUST00000116605.8	7557	6	36	6202	1	-2	multi-exon	FALSE	canonical	3	769	junction_5	83.3273064487266	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAAAAAAATTAAGCCTT	NA	False	NA	46	True	TATAAA	-23	NA	66512409	66518002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
ENSMUSG00000029910.15_2	chr6	+	1793	5	FSM	ENSMUSG00000029910.15	ENSMUST00000101343.2	1725	5	-41	-27	2	-2	multi-exon	FALSE	canonical	3	834	junction_4	68.2692280606717	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAAAAAAATTAAGCCTT	NA	False	NA	46	True	TATAAA	-23	NA	66512410	66518002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754
ENSMUSG00000029910.15_7	chr6	+	1676	5	FSM	ENSMUSG00000029910.15	ENSMUST00000125430.2	1680	5	2	2	2	-2	multi-exon	FALSE	canonical	3	769	junction_4	89.7646227642048	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAAAAAAATTAAGCCTT	NA	False	NA	46	True	TATAAA	-23	NA	66512410	66518002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
ENSMUSG00000029911.15_0	chr6	+	623	7	FSM	ENSMUSG00000029911.15	ENSMUST00000114779.9	4398	7	67	3708	4	0	multi-exon	FALSE	canonical	3	1713	junction_1	435.133695929577	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGGTTATATTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	40448352	40457926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUSG00000029911.15_10	chr6	+	950	7	FSM	ENSMUSG00000029911.15	ENSMUST00000117411.8	933	7	-20	3	2	-3	multi-exon	FALSE	canonical	3	282	junction_1	935.620961358462	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAATGAGTGGTTATATT	NA	False	NA	NA	False	ATTAAA	-9	NA	40448388	40457923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_40448760_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUSG00000029911.15_11	chr6	+	1173	6	FSM	ENSMUSG00000029911.15	ENSMUST00000121360.8	1188	6	12	3	5	0	multi-exon	FALSE	canonical	3	2472	junction_3	238.868666844356	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGGTTATATTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	40448413	40457926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUSG00000029913.15_1	chr6	+	2149	15	FSM	ENSMUSG00000029913.15	ENSMUST00000031976.14	2155	15	-3	9	-3	-6	multi-exon	FALSE	canonical	3	106	junction_5	23.473389188611	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGAGTACGGCTCTT	NA	False	NA	NA	False	ATTAAA	-5	NA	65755968	65913351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
ENSMUSG00000029913.15_2	chr6	+	1603	11	FSM	ENSMUSG00000029913.15	ENSMUST00000031973.13	1488	11	-53	-62	-16	-13	multi-exon	FALSE	canonical	2	2	junction_3	49.012753442344	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATTAAATACAGAGTAC	NA	False	NA	NA	False	AATAGA	-43	NA	65755955	65913344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
ENSMUSG00000029913.15_3	chr6	+	3708	14	NIC	ENSMUSG00000029913.15	novel	2155	15	NA	NA	-19	-2	intron_retention	FALSE	canonical	3	111	junction_5	22.1789387808296	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGTACGGCTCTTGACT	NA	False	NA	NA	False	ATTAAA	-9	NA	65755952	65913355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
ENSMUSG00000029913.15_8	chr6	+	1966	3	FSM	ENSMUSG00000029913.15	ENSMUST00000173538.2	1938	3	-54	26	-20	-26	multi-exon	FALSE	canonical	3	137	junction_2	4.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65755951	65809888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_65756178_65771283_65771368_65808232
ENSMUSG00000029916.12_0	chr6	+	2201	16	FSM	ENSMUSG00000029916.12	ENSMUST00000031977.12	2531	16	323	7	8	-7	multi-exon	FALSE	canonical	3	517	junction_15	44.4424221762146	716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATATCCAGTGTAATCT	NA	False	NA	1	True	NA	NA	NA	40302428	40373689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
ENSMUSG00000029916.12_3	chr6	+	2281	17	NIC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	8	-7	combination_of_known_splicesites	FALSE	canonical	3	34	junction_5	181.494049058778	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATATCCAGTGTAATCT	NA	False	NA	1	True	NA	NA	NA	40302428	40373689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40331947_40332028_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
ENSMUSG00000029916.12_32	chr6	+	2166	15	ISM	ENSMUSG00000029916.12	ENSMUST00000031977.12	2531	16	4320	7	0	-7	3prime_fragment	FALSE	canonical	3	517	junction_14	45.600360274266	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATATCCAGTGTAATCT	NA	False	NA	1	True	NA	NA	NA	40306425	40373689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
ENSMUSG00000029918.10_0	chr6	-	620	3	FSM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	101	386	-2	2	multi-exon	FALSE	canonical	3	1131	junction_2	267.5	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTGGAATG	NA	False	NA	-16	True	AATAAA	-14	NA	39787821	39779123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_39779479_39782304_39782546_39787797
ENSMUSG00000029918.10_2	chr6	-	597	2	ISM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	5375	387	429	1	3prime_fragment	FALSE	canonical	3	1666	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTGTTTAAGATTGGAAT	NA	False	NA	-17	True	AATAAA	-13	NA	39782547	39779124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_39779479_39782304
ENSMUSG00000029918.10_3	chr6	-	503	3	FSM	ENSMUSG00000029918.10	ENSMUST00000114797.2	500	3	-1	-2	-1	2	multi-exon	FALSE	canonical	3	169	junction_1	481	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTGGAATG	NA	False	NA	-16	True	AATAAA	-14	NA	39787820	39779123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_39779479_39782420_39782546_39787797
ENSMUSG00000029920.10_1	chr6	+	4461	24	NIC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	4	3	combination_of_known_junctions	FALSE	canonical	3	279	junction_1	39.2537188345773	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTTAATTATTGTAGCT	1743	False	NA	NA	False	AATAAA	-19	NA	65019608	65092585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
ENSMUSG00000029920.10_8	chr6	+	4887	24	FSM	ENSMUSG00000029920.10	ENSMUST00000031984.9	5168	24	242	39	-7	-39	multi-exon	FALSE	canonical	3	261	junction_1	41.9367603834104	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTAATAAAAATATTTGTG	1969	False	NA	-11	True	AATGAA	-42	NA	65019834	65093006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_65019946_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
ENSMUSG00000029920.10_89	chr6	+	1458	1	ISM	ENSMUSG00000029920.10	ENSMUST00000031984.9	5168	24	71976	19	7132	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATTAAGTTGTATTTCAC	NA	False	NA	9	True	AATAAA	-11	NA	65091568	65093026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_65091600_65093000
ENSMUSG00000029922.16_0	chr6	-	2998	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	28	20	28	-20	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	2333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	-16	True	AATAAA	-4	NA	39397368	39374757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUSG00000029922.16_56	chr6	-	1571	5	FSM	ENSMUSG00000029922.16	ENSMUST00000051671.11	1511	5	-68	8	36	-8	multi-exon	FALSE	canonical	3	1568	junction_2	1258.9473777724	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGAAAGAAGGAGTCTGT	NA	False	NA	-13	True	AATAAA	-8	NA	39397360	39377701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUSG00000029922.16_62	chr6	-	877	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	-136	10	28	-10	multi-exon	FALSE	canonical	3	4055	junction_2	144.5	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTGAAGTGTCTCCGA	NA	False	NA	-10	True	AATAAA	-15	NA	39397368	39382482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_39382895_39387021_39387151_39397032
ENSMUSG00000029924.13_1	chr6	-	2815	15	FSM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	2	1213	-1	0	multi-exon	FALSE	canonical	3	160	junction_14	38.6108925098626	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCTGCTTAAGCTTGAC	NA	False	NA	-8	True	AATAAA	-25	NA	39354607	39312919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
ENSMUSG00000029924.13_16	chr6	-	1811	1	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	41091	1	10766	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACATTTTGCCCTTAAGT	NA	False	NA	-9	True	AATAAA	-15	NA	39313518	39311707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_39311700_39313500
ENSMUSG00000029924.13_21	chr6	-	2897	16	NIC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_14	84.3388930973658	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCTGCTTAAGCTTGAC	NA	False	NA	-8	True	AATAAA	-25	NA	39354608	39312919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349780_39349862_39354552
ENSMUSG00000029924.13_28	chr6	-	3095	18	NIC	ENSMUSG00000029924.13	novel	2878	16	NA	NA	0	17	combination_of_known_junctions	FALSE	canonical	3	23	junction_15	99.4312546157579	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGCCTCTCACTTTCCC	NA	False	NA	10	True	AATAAA	-43	NA	39354606	39312901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39344577_39344701_39349012_39349072_39349780_39349862_39354552
ENSMUSG00000029924.13_5	chr6	-	2950	17	NIC	ENSMUSG00000029924.13	novel	2878	16	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_14	89.544681584112	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCTGCTTAAGCTTGAC	NA	False	NA	-8	True	AATAAA	-25	NA	39354602	39312919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349012_39349072_39349780_39349862_39354552
ENSMUSG00000029924.13_57	chr6	-	2081	13	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	1	8850	1	287	5prime_fragment	FALSE	canonical	3	160	junction_12	41.2501683498248	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATATTTGACTGTATAAT	NA	False	NA	-3	True	AATAAA	-15	NA	39354608	39320556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
ENSMUSG00000029924.13_6	chr6	-	3867	14	FSM	ENSMUSG00000029924.13	ENSMUST00000201448.4	2669	14	4	-1202	4	-10	multi-exon	TRUE	canonical	3	31	junction_9	72.7375113825747	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGATGGGAAACATTTTG	NA	False	NA	-18	True	AATAAA	-6	NA	39354602	39311716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
ENSMUSG00000029924.13_7	chr6	-	2939	16	NIC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_15	85.4180308834148	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCTGCTTAAGCTTGAC	NA	False	NA	-8	True	AATAAA	-25	NA	39354608	39312919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39344577_39344701_39354552
ENSMUSG00000029992.15_0	chr6	+	6286	20	NIC	ENSMUSG00000029992.15	novel	2286	20	NA	NA	-1	-8	combination_of_known_junctions	FALSE	canonical	2	10	junction_3	34.6378173872402	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTGCTGTGTGACTT	9948	False	NA	6	True	AATAAA	-7	NA	87019830	87069171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_87019988_87027902_87028011_87030183_87030243_87030732_87030841_87031582_87031709_87033125_87033185_87034611_87034747_87036361_87036424_87037502_87037583_87040786_87040893_87043605_87043770_87044665_87044762_87050363_87050462_87053238_87053360_87054064_87054223_87059454_87059570_87062233_87062362_87063285_87063454_87064298_87064461_87065095
ENSMUSG00000029992.15_1	chr6	+	6225	19	FSM	ENSMUSG00000029992.15	ENSMUST00000113658.8	6238	19	5	8	1	-8	multi-exon	FALSE	canonical	3	65	junction_15	18.2452429112053	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTGCTGTGTGACTT	9950	False	NA	6	True	AATAAA	-7	NA	87019832	87069171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_87019988_87027902_87028011_87030732_87030841_87031582_87031709_87033125_87033185_87034611_87034747_87036361_87036424_87037502_87037583_87040786_87040893_87043605_87043770_87044665_87044762_87050363_87050462_87053238_87053360_87054064_87054223_87059454_87059570_87062233_87062362_87063285_87063454_87064298_87064461_87065095
ENSMUSG00000029992.15_18	chr6	+	2346	1	ISM	ENSMUSG00000029992.15	ENSMUST00000113658.8	6238	19	47005	1	13043	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTGTGACTTTTTCTTT	NA	False	NA	13	True	AATAAA	-14	NA	87066832	87069178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_87066800_87069200
ENSMUSG00000029993.17_0	chr6	+	889	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	54	7	1	-2	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATACATTTGCTTCC	NA	False	NA	16	True	AATAAA	-22	NA	86986871	87005434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ENSMUSG00000029993.17_1	chr6	+	1185	9	NIC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	210	junction_1	876.96265598941	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATACATTTGCTTCC	NA	False	NA	16	True	AATAAA	-22	NA	86986215	87005434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ENSMUSG00000029993.17_24	chr6	+	892	8	FSM	ENSMUSG00000029993.17	ENSMUST00000032060.15	948	8	54	2	1	-2	multi-exon	FALSE	canonical	0	0	junction_5	1005.23440255576	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATACATTTGCTTCC	NA	False	NA	16	True	AATAAA	-22	NA	86986871	87005434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997825_87000109_87000171_87002467_87002643_87005276
ENSMUSG00000029994.18_0	chr6	-	1972	13	FSM	ENSMUSG00000029994.18	ENSMUST00000001187.15	2002	13	24	6	4	0	multi-exon	FALSE	canonical	3	139	junction_5	17.8737858950537	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGGGTGTGTATTCTTTC	4630	False	NA	-8	True	ATTAAA	-12	NA	86770542	86713828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_86714806_86718817_86718941_86720099_86720159_86721606_86721703_86725868_86725963_86728044_86728102_86729134_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743_86742790_86770490
ENSMUSG00000029994.18_6	chr6	-	1922	12	FSM	ENSMUSG00000029994.18	ENSMUST00000113675.8	2030	12	101	7	-2	0	multi-exon	FALSE	canonical	3	139	junction_5	17.9903555429564	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGGGTGTGTATTCTTTC	399	False	NA	-8	True	ATTAAA	-12	NA	86742791	86713828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_86714806_86718817_86718941_86720099_86720159_86721606_86721703_86725868_86725963_86728044_86728102_86729134_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743
ENSMUSG00000029998.15_1	chr6	-	3638	6	FSM	ENSMUSG00000029998.15	ENSMUST00000032065.15	4295	6	37	620	2	-620	multi-exon	FALSE	canonical	3	165	junction_3	15.4012986465428	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTTTCTCTTCTTTT	NA	False	NA	-8	True	ATTAAA	-13	NA	86374099	86363607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_86366354_86368657_86368811_86369118_86369331_86371390_86371566_86372895_86373103_86373954
ENSMUSG00000029998.15_2	chr6	-	1894	1	ISM	ENSMUSG00000029998.15	ENSMUST00000032065.15	4295	6	8635	620	3824	-620	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTTTCTCTTCTTTT	5894	False	NA	-8	True	ATTAAA	-13	NA	86365501	86363607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_86363600_86365500
ENSMUSG00000029999.15_0	chr6	+	4507	6	FSM	ENSMUSG00000029999.15	ENSMUST00000032066.13	4527	6	13	7	13	-7	multi-exon	FALSE	canonical	2	3	junction_4	2.89827534923789	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTAAATCTCAAGACTGAA	NA	False	NA	NA	False	AATGAA	-14	NA	86172217	86252694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86172528_86206412_86206467_86240140_86240259_86246911_86247062_86248361_86248472_86248929
ENSMUSG00000029999.15_1	chr6	+	3283	1	ISM	ENSMUSG00000029999.15	ENSMUST00000032066.13	4527	6	77207	7	60836	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTAAATCTCAAGACTGAA	NA	False	NA	NA	False	AATGAA	-14	NA	86249411	86252694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_86249400_86252700
ENSMUSG00000030001.5_0	chr6	+	769	3	FSM	ENSMUSG00000030001.5	ENSMUST00000032070.4	759	3	-16	6	-16	-6	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGAGTTTGCTTGCTTGG	NA	False	NA	NA	False	ATTAAA	-16	NA	85994156	85997972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_85994440_85995560_85995714_85997639
ENSMUSG00000030002.16_0	chr6	-	3595	1	ISM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	15801	4	5017	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACAGGTGTACTATCTTG	NA	False	NA	-2	True	NA	NA	NA	85922848	85919253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_85919300_85922800
ENSMUSG00000030002.16_1	chr6	-	4189	9	FSM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	15	2231	-10	-2231	multi-exon	FALSE	canonical	3	240	junction_7	14.8070928949608	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGATAAAGCATTTTCTG	7335	False	NA	-26	True	AATAAA	-6	NA	85938634	85921480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85935565_85935698_85936197_85936274_85938419
ENSMUSG00000030007.9_0	chr6	+	1796	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	552	93	14	-93	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	6756	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGCTTGGTGTGTTTTTC	5162	False	NA	13	True	AATAAA	-11	NA	85429047	85445364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUSG00000030008.10_0	chr6	-	980	5	FSM	ENSMUSG00000030008.10	ENSMUST00000126805.8	953	5	100	-127	75	-1	multi-exon	FALSE	canonical	3	68	junction_4	38.4991883031318	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGTTTGTGCCTGTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	85428852	85423792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428738
ENSMUSG00000030008.10_10	chr6	-	1321	4	FSM	ENSMUSG00000030008.10	ENSMUST00000139875.8	1000	4	76	-397	76	-1	multi-exon	FALSE	canonical	3	19	junction_1	61.5593661074865	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGTTTGTGCCTGTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	85428851	85423792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85424790_85424917_85425028_85425472_85425574_85428738
ENSMUSG00000030008.10_11	chr6	-	924	4	NIC	ENSMUSG00000030008.10	novel	1038	5	NA	NA	12	-1	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	63.8957484240279	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGTTTGTGCCTGTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	85428253	85423792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_85424280_85424502_85424671_85424917_85425028_85428094
ENSMUSG00000030008.10_12	chr6	-	1375	4	NIC	ENSMUSG00000030008.10	novel	955	4	NA	NA	4	-1	intron_retention	FALSE	canonical	3	19	junction_1	61.3858470840162	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGTTTGTGCCTGTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	85428261	85423792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_85424790_85424917_85425028_85425472_85425574_85428094
ENSMUSG00000030008.10_17	chr6	-	1201	4	NIC	ENSMUSG00000030008.10	novel	953	5	NA	NA	77	-1	intron_retention	FALSE	canonical	3	68	junction_3	41.907305117631	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGTTTGTGCCTGTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	85428850	85423792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_85424671_85424917_85425028_85425472_85425574_85428738
ENSMUSG00000030008.10_2	chr6	-	350	1	ISM	ENSMUSG00000030008.10	ENSMUST00000032080.9	1038	5	4123	1	4041	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGTTTGTGCCTGTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	85424142	85423792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_85423800_85424100
ENSMUSG00000030008.10_3	chr6	-	1031	5	FSM	ENSMUSG00000030008.10	ENSMUST00000032080.9	1038	5	4	3	4	-3	multi-exon	FALSE	canonical	3	116	junction_4	18.9786063766547	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCAGGTTTGTGCCTGTG	NA	False	NA	NA	False	AATAAA	-13	NA	85428261	85423794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428094
ENSMUSG00000030008.10_6	chr6	-	810	4	NIC	ENSMUSG00000030008.10	novel	953	5	NA	NA	77	-1	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	62.6329696636595	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGTTTGTGCCTGTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	85428850	85423792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_85424280_85424917_85425028_85425472_85425574_85428738
ENSMUSG00000030008.10_7	chr6	-	1252	4	FSM	ENSMUSG00000030008.10	ENSMUST00000146086.8	955	4	-76	-221	6	-3	multi-exon	FALSE	canonical	3	116	junction_3	20.8219969156552	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCAGGTTTGTGCCTGTG	NA	False	NA	NA	False	AATAAA	-13	NA	85428259	85423794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85424671_85424917_85425028_85425472_85425574_85428094
ENSMUSG00000030008.10_9	chr6	-	877	4	NIC	ENSMUSG00000030008.10	novel	953	5	NA	NA	77	-1	combination_of_known_splicesites	FALSE	canonical	2	6	junction_3	67.1830004953303	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGTTTGTGCCTGTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	85428850	85423792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_85424280_85424502_85424671_85424917_85425028_85428738
ENSMUSG00000030016.15_11	chr6	+	6331	27	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	162	junction_24	66.2109436064344	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891359	83963851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
ENSMUSG00000030016.15_120	chr6	+	2336	7	ISM	ENSMUSG00000030016.15	ENSMUST00000032088.14	6199	28	62316	-220	-2902	0	3prime_fragment	FALSE	canonical	3	109	junction_3	122.132100612411	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83953689	83963851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_83954412_83955003_83955070_83955975_83956892_83958665_83958768_83960957_83961057_83961758_83961878_83963539
ENSMUSG00000030016.15_13	chr6	+	6284	26	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	92	junction_11	77.5262123413752	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACACTGTTGTGTTTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	83891354	83963850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83958665_83958768_83960957_83961057_83961758_83961878_83963539
ENSMUSG00000030016.15_17	chr6	+	6175	25	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	92	junction_11	72.2910782877113	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891362	83963851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
ENSMUSG00000030016.15_19	chr6	+	4368	26	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	3	32	junction_22	83.1527365755331	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACACTGTTGTGTTTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	83891361	83963849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83958665_83958768_83960957_83961057_83961758_83961878_83963539
ENSMUSG00000030016.15_21	chr6	+	4272	25	NIC	ENSMUSG00000030016.15	novel	4366	26	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	40	junction_22	82.4636283460775	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACACTGTTGTGTTTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	83891355	83963849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83960957_83961057_83961758_83961878_83963539
ENSMUSG00000030016.15_9	chr6	+	6436	28	FSM	ENSMUSG00000030016.15	ENSMUST00000032088.14	6199	28	-17	-220	1	0	multi-exon	FALSE	canonical	3	109	junction_24	71.435679050644	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891356	83963851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83958665_83958768_83960957_83961057_83961758_83961878_83963539
ENSMUSG00000030019.7_0	chr6	+	3089	1	FSM	ENSMUSG00000030019.7	ENSMUST00000032094.7	2963	1	-143	17	-143	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	242	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGCACAAAATCC	NA	False	NA	25	True	AATAAA	-26	NA	119456485	119459574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_119456500_119459600
ENSMUSG00000030020.14_0	chr6	-	2887	1	ISM	ENSMUSG00000030020.14	ENSMUST00000113447.8	7679	8	193561	11	107587	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAGGAATGTTGTCAT	NA	False	NA	-27	True	AATAAA	-6	NA	92350786	92347899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_92347900_92350800
ENSMUSG00000030020.14_2	chr6	-	5201	8	FSM	ENSMUSG00000030020.14	ENSMUST00000113445.2	3708	8	13	-1506	13	1506	multi-exon	FALSE	canonical	3	6	junction_7	6.79135104228841	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAGATAAATATGCAGCA	NA	False	NA	NA	False	AATAAA	-19	NA	92458360	92350858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_92353802_92387737_92388614_92393716_92393904_92397123_92397328_92399311_92399450_92402560_92402675_92435455_92435640_92457805
ENSMUSG00000030020.14_3	chr6	-	7268	5	ISM	ENSMUSG00000030020.14	ENSMUST00000113445.2	3708	8	58990	-4492	58990	16	3prime_fragment	FALSE	canonical	3	13	junction_3	6.20483682299543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCCTCGCTCTTGTTCCAG	NA	False	NA	0	True	AATAAA	-33	NA	92399383	92347872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_92353802_92387737_92388614_92393716_92393904_92397123_92397328_92399311
ENSMUSG00000030020.14_4	chr6	-	4932	8	FSM	ENSMUSG00000030020.14	ENSMUST00000113446.8	7860	8	-39	2967	-39	1507	multi-exon	FALSE	canonical	2	9	junction_7	6.08779307218929	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGATAAATATGCAGCAC	NA	False	NA	NA	False	AATAAA	-20	NA	92511881	92350857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_92353802_92387737_92388614_92393716_92393904_92397123_92397328_92399311_92399450_92402560_92402675_92435455_92435640_92511596
ENSMUSG00000030020.14_5	chr6	-	3579	2	ISM	ENSMUSG00000030020.14	ENSMUST00000113445.2	3708	8	70006	-1512	70006	1512	3prime_fragment	FALSE	canonical	3	18	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATATGCAGCACTGTGC	NA	False	NA	NA	False	AATAAA	-25	NA	92388367	92350852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_92353802_92387737
ENSMUSG00000030022.15_1	chr6	-	8040	40	FSM	ENSMUSG00000030022.15	ENSMUST00000113438.8	8016	40	-32	8	-32	-5	multi-exon	FALSE	canonical	2	6	junction_11	5.38656863230259	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATAGATGCTTCTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	92920505	92749687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_92751558_92754373_92754469_92763826_92763932_92770463_92770556_92772904_92773039_92773130_92773226_92773331_92773427_92773969_92774103_92774959_92775155_92783995_92784167_92793450_92793625_92800327_92800496_92826272_92826450_92831184_92831347_92834866_92835125_92836746_92836915_92837080_92837186_92840307_92840428_92846915_92847081_92849268_92849434_92849770_92849982_92856824_92856952_92857600_92857731_92857816_92857984_92864321_92864418_92864666_92864785_92866862_92867000_92867089_92867272_92871221_92871368_92878355_92878461_92880668_92880811_92882134_92882282_92885457_92885564_92885678_92885720_92886669_92886786_92886886_92886971_92889603_92889894_92914227_92914391_92919027_92919429_92920021
ENSMUSG00000030022.15_12	chr6	-	7520	39	NIC	ENSMUSG00000030022.15	novel	8016	40	NA	NA	319	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_10	5.66223823485509	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGATGCTTCTCTTGGCTT	NA	False	NA	NA	False	AATAAA	-22	NA	92920154	92749682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_92751558_92754373_92754469_92763826_92763932_92770463_92770556_92772904_92773039_92773130_92773226_92773331_92773427_92773969_92774103_92774959_92775155_92783995_92784167_92800327_92800496_92826272_92826450_92831184_92831347_92834866_92835125_92836746_92836915_92837080_92837186_92840307_92840428_92846915_92847081_92849268_92849434_92849770_92849982_92856824_92856952_92857600_92857731_92857816_92857984_92864321_92864418_92864666_92864785_92866862_92867000_92867089_92867272_92871221_92871368_92878355_92878461_92880668_92880811_92882134_92882282_92885457_92885564_92885678_92885720_92886669_92886786_92886886_92886971_92889603_92889894_92914227_92914391_92919027_92919429_92920021
ENSMUSG00000030022.15_13	chr6	-	2256	5	ISM	ENSMUSG00000030022.15	ENSMUST00000167391.2	6033	30	105415	14	58606	-14	3prime_fragment	FALSE	canonical	2	12	junction_2	3.53553390593274	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCACATCCAAACCATAGAT	328	False	NA	NA	False	AATAAA	-8	NA	92773007	92749696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_92751558_92754373_92754469_92763826_92763932_92770463_92770556_92772904
ENSMUSG00000030022.15_2	chr6	-	4473	19	ISM	ENSMUSG00000030022.15	ENSMUST00000167391.2	6033	30	31356	0	-9930	0	3prime_fragment	FALSE	canonical	2	6	junction_11	6.17466948183274	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGATGCTTCTCTTGGCTT	9962	False	NA	NA	False	AATAAA	-22	NA	92847066	92749682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_92751558_92754373_92754469_92763826_92763932_92770463_92770556_92772904_92773039_92773130_92773226_92773331_92773427_92773969_92774103_92774959_92775155_92783995_92784167_92793450_92793625_92800327_92800496_92826272_92826450_92831184_92831347_92834866_92835125_92836746_92836915_92837080_92837186_92840307_92840428_92846915
ENSMUSG00000030022.15_20	chr6	-	1785	1	ISM	ENSMUSG00000030022.15	ENSMUST00000130314.2	4519	5	12733	44	7210	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATATATATATATATATA	NA	False	NA	NA	False	ATTAAA	-19	NA	92824403	92822618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_92822600_92824400
ENSMUSG00000030022.15_22	chr6	-	2046	3	ISM	ENSMUSG00000030022.15	ENSMUST00000167391.2	6033	30	114522	-2	67713	-1	3prime_fragment	FALSE	canonical	2	12	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGCTTCTCTTGGCTTCT	9435	False	NA	NA	False	AATAAA	-24	NA	92763900	92749680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_92751558_92754373_92754469_92763826
ENSMUSG00000030022.15_26	chr6	-	439	1	ISM	ENSMUSG00000030022.15	ENSMUST00000113438.8	8016	40	170347	8	81487	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATAGATGCTTCTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	92750126	92749687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_92749700_92750100
ENSMUSG00000030022.15_4	chr6	-	3953	16	ISM	ENSMUSG00000030022.15	ENSMUST00000167391.2	6033	30	41647	5	351	-5	3prime_fragment	FALSE	canonical	2	6	junction_11	6.45806988709991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATAGATGCTTCTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	92836775	92749687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_92751558_92754373_92754469_92763826_92763932_92770463_92770556_92772904_92773039_92773130_92773226_92773331_92773427_92773969_92774103_92774959_92775155_92783995_92784167_92793450_92793625_92800327_92800496_92826272_92826450_92831184_92831347_92834866_92835125_92836746
ENSMUSG00000030022.15_5	chr6	-	7841	39	NIC	ENSMUSG00000030022.15	novel	8016	40	NA	NA	-1	-5	combination_of_known_splicesites	FALSE	canonical	1	2	junction_11	5.60723958236778	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATAGATGCTTCTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	92920474	92749687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_92751558_92754373_92754469_92763826_92763932_92770463_92770556_92772904_92773039_92773130_92773226_92773331_92773427_92773969_92774103_92774959_92775155_92783995_92784167_92793450_92793625_92826272_92826450_92831184_92831347_92834866_92835125_92836746_92836915_92837080_92837186_92840307_92840428_92846915_92847081_92849268_92849434_92849770_92849982_92856824_92856952_92857600_92857731_92857816_92857984_92864321_92864418_92864666_92864785_92866862_92867000_92867089_92867272_92871221_92871368_92878355_92878461_92880668_92880811_92882134_92882282_92885457_92885564_92885678_92885720_92886669_92886786_92886886_92886971_92889603_92889894_92914227_92914391_92919027_92919429_92920021
ENSMUSG00000030022.15_8	chr6	-	7236	39	ISM	ENSMUSG00000030022.15	ENSMUST00000113438.8	8016	40	1365	8	1365	-5	3prime_fragment	FALSE	canonical	2	6	junction_11	5.43616952073533	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATAGATGCTTCTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	92919108	92749687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_92751558_92754373_92754469_92763826_92763932_92770463_92770556_92772904_92773039_92773130_92773226_92773331_92773427_92773969_92774103_92774959_92775155_92783995_92784167_92793450_92793625_92800327_92800496_92826272_92826450_92831184_92831347_92834866_92835125_92836746_92836915_92837080_92837186_92840307_92840428_92846915_92847081_92849268_92849434_92849770_92849982_92856824_92856952_92857600_92857731_92857816_92857984_92864321_92864418_92864666_92864785_92866862_92867000_92867089_92867272_92871221_92871368_92878355_92878461_92880668_92880811_92882134_92882282_92885457_92885564_92885678_92885720_92886669_92886786_92886886_92886971_92889603_92889894_92914227_92914391_92919027
ENSMUSG00000030029.15_0	chr6	-	4979	19	FSM	ENSMUSG00000030029.15	ENSMUST00000101126.3	4951	19	-30	2	-9	-2	multi-exon	FALSE	canonical	3	92	junction_14	16.0804305574689	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTAAGTGTGTGCGGC	6730	False	NA	NA	False	AATAAA	-12	NA	94677148	94581518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_94582985_94583083_94583345_94584272_94584420_94585020_94585147_94585689_94586110_94586597_94586880_94588352_94588674_94590544_94590709_94593369_94593442_94594226_94594299_94597233_94597315_94599595_94599740_94601910_94602055_94603349_94603494_94604940_94605085_94607082_94607221_94631827_94631903_94640907_94640980_94676442
ENSMUSG00000030029.15_4	chr6	-	4830	18	NIC	ENSMUSG00000030029.15	novel	4951	19	NA	NA	-9	-4	intron_retention	FALSE	canonical	3	8	junction_2	29.2854936514361	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATACTAAGTGTGTGCG	6730	False	NA	NA	False	AATAAA	-10	NA	94677148	94581520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_94582985_94583083_94583345_94585020_94585147_94585689_94586110_94586597_94586880_94588352_94588674_94590544_94590709_94593369_94593442_94594226_94594299_94597233_94597315_94599595_94599740_94601910_94602055_94603349_94603494_94604940_94605085_94607082_94607221_94631827_94631903_94640907_94640980_94676442
ENSMUSG00000030029.15_9	chr6	-	2864	7	ISM	ENSMUSG00000030029.15	ENSMUST00000101126.3	4951	19	88604	2	-6140	-2	3prime_fragment	FALSE	canonical	3	108	junction_3	17.58471558548	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTAAGTGTGTGCGGC	NA	False	NA	NA	False	AATAAA	-12	NA	94588514	94581518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_94582985_94583083_94583345_94584272_94584420_94585020_94585147_94585689_94586110_94586597_94586880_94588352
ENSMUSG00000030031.15_0	chr6	+	4543	4	FSM	ENSMUSG00000030031.15	ENSMUST00000032107.10	4869	4	189	137	49	-137	multi-exon	FALSE	canonical	3	65	junction_1	4.18993502999218	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGCCAGTGTTGTAAAC	NA	False	NA	6	True	AATAAA	-16	NA	95094909	95106634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_95094956_95095503_95095715_95098719_95099829_95103457
ENSMUSG00000030031.15_1	chr6	+	4330	3	FSM	ENSMUSG00000030031.15	ENSMUST00000119582.3	4518	3	50	138	50	-138	multi-exon	FALSE	canonical	2	6	junction_1	31	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGCCAGTGTTGTAAA	NA	False	NA	5	True	AATAAA	-15	NA	95094910	95106633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_95094956_95098719_95099829_95103457
ENSMUSG00000030031.15_3	chr6	+	4496	3	ISM	ENSMUSG00000030031.15	ENSMUST00000032107.10	4869	4	781	140	537	-140	3prime_fragment	FALSE	canonical	3	68	junction_2	3.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACTGCCAGTGTTGTA	NA	False	NA	3	True	AATAAA	-13	NA	95095501	95106631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_95095715_95098719_95099829_95103457
ENSMUSG00000030031.15_4	chr6	+	3496	2	ISM	ENSMUSG00000030031.15	ENSMUST00000119582.3	4518	3	4648	138	4544	-138	3prime_fragment	FALSE	canonical	3	68	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGCCAGTGTTGTAAA	NA	False	NA	5	True	AATAAA	-15	NA	95099508	95106633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_95099829_95103457
ENSMUSG00000030031.15_5	chr6	+	2410	1	ISM	ENSMUSG00000030031.15	ENSMUST00000032107.10	4869	4	9563	78	9319	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCACAAACTATCTCAT	NA	False	NA	12	True	ATTAAA	-9	NA	95104283	95106693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_95104300_95106700
ENSMUSG00000030032.15_0	chr6	-	1185	11	FSM	ENSMUSG00000030032.15	ENSMUST00000125894.9	1216	11	26	5	8	-5	multi-exon	FALSE	canonical	1	8	junction_10	9.65453261426984	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGTCCTTGTCTGAGCA	9908	False	NA	-5	True	TATAAA	-13	NA	83133353	83129695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156_83133228_83133296
ENSMUSG00000030032.15_2	chr6	-	1230	10	FSM	ENSMUSG00000030032.15	ENSMUST00000153148.8	4634	10	50	3354	32	-5	multi-exon	FALSE	canonical	3	33	junction_4	3.94405318873308	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGTCCTTGTCTGAGCA	9932	False	NA	-5	True	TATAAA	-13	NA	83133329	83129695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156
ENSMUSG00000030034.13_0	chr6	-	2733	8	Fusion	ENSMUSG00000030035.15_ENSMUSG00000030034.13	novel	1503	5	NA	NA	-114	0	multi-exon	FALSE	canonical	3	41	junction_3	37.4154829896253	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTGATTCTGGGTAGA	NA	False	NA	-8	True	ATTAAA	-16	NA	83102124	83096025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr6_-_83096702_83096848_83097026_83097165_83097269_83098183_83099346_83100974_83101145_83101287_83101407_83101565_83101759_83101991
ENSMUSG00000030034.13_2	chr6	-	1211	5	FSM	ENSMUSG00000030034.13	ENSMUST00000032109.5	1038	5	-113	-60	-113	-3	multi-exon	FALSE	canonical	3	116	junction_3	6.41774882649672	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTTGTATCGAATTGCT	NA	False	NA	-13	True	ATTAAA	-15	NA	83102123	83098748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83099346_83100974_83101145_83101287_83101407_83101565_83101759_83101991
ENSMUSG00000030034.13_3	chr6	-	1000	4	ISM	ENSMUSG00000030034.13	ENSMUST00000032109.5	1038	5	369	-98	208	35	3prime_fragment	FALSE	canonical	3	116	junction_3	6.53197264742181	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTGAACCTGAGTGTGTA	NA	False	NA	25	True	NA	NA	NA	83101641	83098710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_83099346_83100974_83101145_83101287_83101407_83101565
ENSMUSG00000030034.13_4	chr6	-	1340	4	NIC	ENSMUSG00000030034.13	novel	1503	5	NA	NA	-99	-3	intron_retention	FALSE	canonical	3	116	junction_2	3.55902608401044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTTGTATCGAATTGCT	NA	False	NA	-13	True	ATTAAA	-15	NA	83102109	83098748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_83099346_83100974_83101407_83101565_83101759_83101991
ENSMUSG00000030034.13_6	chr6	-	2967	3	NIC	ENSMUSG00000030034.13	novel	1503	5	NA	NA	-98	-4	intron_retention	FALSE	canonical	3	116	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCTTGTATCGAATTGC	NA	False	NA	-14	True	ATTAAA	-14	NA	83102108	83098749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_83101407_83101565_83101759_83101991
ENSMUSG00000030035.15_0	chr6	-	1416	4	NIC	ENSMUSG00000030035.15	novel	1419	5	NA	NA	-4	0	intron_retention	FALSE	canonical	3	121	junction_3	19.1369334592098	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTGATTCTGGGTAGA	NA	False	NA	-8	True	ATTAAA	-16	NA	83098391	83096025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_83097026_83097165_83097269_83097752_83097858_83098183
ENSMUSG00000030035.15_1	chr6	-	1746	4	FSM	ENSMUSG00000030035.15	ENSMUST00000131939.6	1902	4	149	7	-4	-7	multi-exon	FALSE	canonical	3	121	junction_3	19.1369334592098	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGCTGCTTGTGATTCT	NA	False	NA	-15	True	ATTAAA	-9	NA	83098391	83096032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83096702_83096848_83097026_83097165_83097858_83098183
ENSMUSG00000030035.15_11	chr6	-	1309	3	NIC	ENSMUSG00000030035.15	novel	1314	4	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	41	junction_2	62	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGATTCTGGGTA	NA	False	NA	-10	True	ATTAAA	-14	NA	83098391	83096027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_83097026_83097165_83097269_83098183
ENSMUSG00000030035.15_13	chr6	-	1865	2	ISM	ENSMUSG00000030035.15	ENSMUST00000142493.2	620	3	-174	-587	-174	-3	intron_retention	FALSE	canonical	3	165	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTTGTGATTCTGGGT	NA	False	NA	-11	True	ATTAAA	-13	NA	83098033	83096028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_83097026_83097165
ENSMUSG00000030035.15_2	chr6	-	1737	4	NIC	ENSMUSG00000030035.15	novel	981	5	NA	NA	2	-7	intron_retention	FALSE	canonical	3	42	junction_3	56.1921307262463	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGCTGCTTGTGATTCT	NA	False	NA	-15	True	ATTAAA	-9	NA	83098385	83096032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_83096702_83096848_83097026_83097165_83097855_83098183
ENSMUSG00000030035.15_3	chr6	-	1162	4	FSM	ENSMUSG00000030035.15	ENSMUST00000113936.10	1314	4	148	4	-5	-3	multi-exon	FALSE	canonical	3	41	junction_3	56.6627449623354	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTTGTGATTCTGGGT	NA	False	NA	-11	True	ATTAAA	-13	NA	83098392	83096028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83098183
ENSMUSG00000030035.15_4	chr6	-	1281	5	FSM	ENSMUSG00000030035.15	ENSMUST00000146328.4	981	5	-41	-259	-22	-3	multi-exon	TRUE	canonical	3	42	junction_4	48.7769156466458	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTTGTGATTCTGGGT	NA	False	NA	-11	True	ATTAAA	-13	NA	83098409	83096028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83097752_83097855_83098183
ENSMUSG00000030035.15_6	chr6	-	1267	5	FSM	ENSMUSG00000030035.15	ENSMUST00000032111.11	1419	5	148	4	-5	-3	multi-exon	FALSE	canonical	3	121	junction_4	18.4390889145858	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTTGTGATTCTGGGT	NA	False	NA	-11	True	ATTAAA	-13	NA	83098392	83096028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83097752_83097858_83098183
ENSMUSG00000030035.15_9	chr6	-	1911	3	NIC	ENSMUSG00000030035.15	novel	1902	4	NA	NA	-18	-3	intron_retention	FALSE	canonical	3	121	junction_2	22	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTTGTGATTCTGGGT	NA	False	NA	-11	True	ATTAAA	-13	NA	83098405	83096028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_83097026_83097165_83097858_83098183
ENSMUSG00000030036.9_0	chr6	+	2753	4	FSM	ENSMUSG00000030036.9	ENSMUST00000032114.8	2780	4	20	7	20	-7	multi-exon	FALSE	canonical	3	308	junction_2	15.1070255914995	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTAACTGACCCCTTGCT	5193	False	NA	21	True	AATAAA	-10	NA	83092496	83095872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83092908_83092999_83093230_83093608_83093806_83093957
ENSMUSG00000030036.9_1	chr6	+	3210	2	FSM	ENSMUSG00000030036.9	ENSMUST00000145403.3	684	2	-991	-1535	29	-12	multi-exon	FALSE	canonical	3	345	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAACCTAACTGACCCC	5202	False	NA	16	True	AATAAA	-5	NA	83092505	83095867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83093806_83093957
ENSMUSG00000030036.9_4	chr6	+	2524	3	NIC	ENSMUSG00000030036.9	novel	2780	4	NA	NA	24	-2	combination_of_known_splicesites	FALSE	canonical	3	39	junction_1	153	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGACCCCTTGCTTTAGA	5197	False	NA	26	True	AATAAA	-15	NA	83092500	83095877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83092908_83093608_83093806_83093957
ENSMUSG00000030037.10_0	chr6	+	840	1	NIC	ENSMUSG00000079511.9	novel	3628	12	NA	NA	7481	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTATTTTTCTCAGGTT	7441	False	NA	NA	False	ATTAAA	-17	NA	83086078	83086918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83086100_83086900
ENSMUSG00000030037.10_2	chr6	+	732	2	NIC	ENSMUSG00000030037.10	novel	695	3	NA	NA	-14	-7	intron_retention	FALSE	canonical	3	747	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGCTATTTTTCTC	7449	False	NA	NA	False	ATTAAA	-12	NA	83086086	83086913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83086408_83086502
ENSMUSG00000030041.10_0	chr6	+	3526	9	NIC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	20	-1	intron_retention	FALSE	canonical	0	0	junction_7	186.808683885413	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTTCAGAGCATTC	NA	False	NA	11	True	ATTAAA	-16	NA	82923902	83007163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
ENSMUSG00000030041.10_1	chr6	+	1923	10	FSM	ENSMUSG00000030041.10	ENSMUST00000113980.4	1945	10	21	1	21	-1	multi-exon	FALSE	canonical	0	0	junction_8	176.542723818721	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTTCAGAGCATTC	NA	False	NA	11	True	ATTAAA	-16	NA	82923903	83007163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
ENSMUSG00000030041.10_17	chr6	+	1895	9	ISM	ENSMUSG00000030041.10	ENSMUST00000113980.4	1945	10	9505	1	9505	-1	3prime_fragment	FALSE	canonical	0	0	junction_7	187.106545516184	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTTCAGAGCATTC	NA	False	NA	11	True	ATTAAA	-16	NA	82933387	83007163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
ENSMUSG00000030041.10_4	chr6	+	1780	9	NIC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	21	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	187.231641289607	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCATTGTTCAGAGCAT	NA	False	NA	9	True	ATTAAA	-14	NA	82923903	83007161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83006750
ENSMUSG00000030042.16_0	chr6	-	722	4	NIC	ENSMUSG00000030042.16	novel	457	4	NA	NA	-2	199	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	385.203842140755	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTCATTGTTATGTCTC	NA	False	NA	75	True	NA	NA	NA	82629853	82595773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_82596120_82628417_82628460_82629063_82629149_82629604
ENSMUSG00000030042.16_1	chr6	-	533	4	FSM	ENSMUSG00000030042.16	ENSMUST00000161309.8	457	4	34	-110	34	110	multi-exon	FALSE	canonical	3	132	junction_1	435.143909784134	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTGTTTTTCTTTTTCT	6143	False	NA	-14	True	NA	NA	NA	82682312	82595862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_82596120_82628417_82628460_82629063_82629149_82682163
ENSMUSG00000030042.16_12	chr6	-	917	4	NNC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	16631	34	at_least_one_novel_splicesite	FALSE	canonical	3	78	junction_3	429.604727886254	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCAGTGTGTTGCTCAGT	NA	False	NA	-2	True	NA	NA	NA	82665715	82624262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_82625018_82628417_82628460_82629063_82629149_82665680
ENSMUSG00000030042.16_3	chr6	-	1081	1	ISM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	5122	26	4711	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTTGCTTCTTGAGAC	NA	False	NA	-25	True	ATTAAA	-1	NA	82624788	82623707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_82623700_82624800
ENSMUSG00000030042.16_4	chr6	-	1127	4	FSM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	61	581	2	34	multi-exon	FALSE	canonical	3	735	junction_3	133.522365999941	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCAGTGTGTTGCTCAGT	NA	False	NA	-2	True	NA	NA	NA	82629849	82624262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629604
ENSMUSG00000030042.16_5	chr6	-	1211	3	ISM	ENSMUSG00000030042.16	ENSMUST00000141138.8	890	4	24	-34	22	34	intron_retention	FALSE	canonical	3	893	junction_1	84.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCAGTGTGTTGCTCAGT	NA	False	NA	-2	True	NA	NA	NA	82629477	82624262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_82625018_82628417_82628460_82629063
ENSMUSG00000030042.16_7	chr6	-	1037	4	NIC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	29	35	combination_of_known_junctions	FALSE	canonical	3	146	junction_3	397.998604129322	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTGTGTTGCTCAGTG	6138	False	NA	-1	True	NA	NA	NA	82682317	82624261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_82625018_82628417_82628460_82629063_82629149_82682163
ENSMUSG00000030045.11_2	chr6	-	1369	5	FSM	ENSMUSG00000030045.11	ENSMUST00000032124.9	5000	5	22	3609	22	514	multi-exon	FALSE	canonical	3	603	junction_3	40.9839907768875	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAGCATAAAGTCTGCAT	NA	False	NA	NA	False	ATTAAA	-23	NA	81942917	81938440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
ENSMUSG00000030051.11_1	chr6	-	2744	12	NNC	ENSMUSG00000030051.11	novel	1889	11	NA	NA	-7	-5	intron_retention	TRUE	non_canonical	0	0	junction_1	24.981315331713	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTTGCTGTGGCTTATT	NA	False	NA	NA	False	AATAAA	-13	NA	87649136	87605410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_87605575_87605982_87606199_87606310_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ENSMUSG00000030051.11_10	chr6	-	3663	6	ISM	ENSMUSG00000030051.11	ENSMUST00000032130.8	1889	11	-1	21342	-1	0	5prime_fragment	FALSE	canonical	3	57	junction_1	10.2489023802552	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTTGTGTCTCTTATTT	NA	False	NA	NA	False	CATAAA	-17	NA	87649176	87628072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ENSMUSG00000030051.11_15	chr6	-	3508	5	NIC	ENSMUSG00000030051.11	novel	3588	6	NA	NA	21	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	30.8413277924281	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTTGTGTCTCTTATTT	NA	False	NA	NA	False	CATAAA	-17	NA	87649154	87628072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_87630875_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ENSMUSG00000030051.11_4	chr6	-	1941	10	NIC	ENSMUSG00000030051.11	novel	1889	11	NA	NA	-2	2	intron_retention	FALSE	canonical	3	41	junction_3	13.2030673577893	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTTTGATCTTCTGCCC	NA	False	NA	-10	True	AATAAA	-17	NA	87649131	87606728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ENSMUSG00000030051.11_9	chr6	-	3365	6	ISM	ENSMUSG00000030051.11	ENSMUST00000065997.5	3132	10	121	22667	38	0	5prime_fragment	FALSE	canonical	3	8	junction_5	25.5452539623312	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTTGTGTCTCTTATTT	NA	False	NA	NA	False	CATAAA	-17	NA	87649008	87628072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648971
ENSMUSG00000030055.17_0	chr6	-	4637	3	FSM	ENSMUSG00000030055.17	ENSMUST00000078647.11	4605	3	-49	17	-49	-5	multi-exon	FALSE	canonical	3	38	junction_1	1	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGACTCTGTGCTCAAGCA	2645	False	NA	-10	True	ATTAAA	-10	NA	87788810	87765851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_87769823_87771595_87771780_87788328
ENSMUSG00000030055.17_1	chr6	-	4551	4	NNC	ENSMUSG00000030055.17	novel	4605	3	NA	NA	-50	-1	intron_retention	TRUE	non_canonical	0	0	junction_1	18.4028983224563	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTGCTCAAGCATGGT	2644	False	NA	-6	True	ATTAAA	-14	NA	87788811	87765847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_87768649_87768739_87769823_87771595_87771780_87788328
ENSMUSG00000030056.9_0	chr6	-	3229	1	ISM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	21290	11	5046	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGGACATGCAGAT	NA	False	NA	NA	False	AATACA	-43	NA	87794490	87791261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_87791300_87794500
ENSMUSG00000030056.9_1	chr6	-	1565	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	80	4192	-5	3047	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAGAAAGGAAACATCTG	NA	False	NA	NA	False	ATTAAA	-8	NA	87815700	87795442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
ENSMUSG00000030057.16_0	chr6	-	1562	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	60	553	13	-86	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	4667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTAAAGTTCCTTTTGTTT	NA	False	NA	-32	True	AATAAA	-24	NA	87828028	87820149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
ENSMUSG00000030057.16_2	chr6	-	1559	5	FSM	ENSMUSG00000030057.16	ENSMUST00000032138.15	2178	5	61	558	14	-91	multi-exon	FALSE	non_canonical	0	0	junction_2	4630.48644177909	1538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGACTAAAGTTCCTTT	NA	False	NA	-37	True	AATAAA	-19	NA	87828027	87820154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_87821139_87822103_87822306_87822446_87822540_87822637_87822776_87827885
ENSMUSG00000030057.16_4	chr6	-	1535	5	FSM	ENSMUSG00000030057.16	ENSMUST00000113619.8	1661	5	35	91	14	-91	multi-exon	FALSE	canonical	3	2802	junction_3	3497.63613030286	1430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGACTAAAGTTCCTTT	NA	False	NA	-37	True	AATAAA	-19	NA	87828027	87820154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
ENSMUSG00000030057.16_5	chr6	-	1544	5	NIC	ENSMUSG00000030057.16	novel	2178	5	NA	NA	14	-85	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	5047.4819650495	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAAGTTCCTTTTGTTTG	NA	False	NA	-31	True	AATAAA	-25	NA	87828027	87820148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_87821139_87822103_87822306_87822446_87822540_87822658_87822776_87827885
ENSMUSG00000030058.18_0	chr6	+	2953	24	FSM	ENSMUSG00000030058.18	ENSMUST00000113607.10	4140	24	120	1067	6	-2	multi-exon	TRUE	canonical	0	0	junction_2	198.307183759023	1589	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATTTATACTCAAAGAAA	NA	False	NA	-1	True	AATAAA	-19	NA	87864915	87889510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
ENSMUSG00000030059.16_1	chr6	-	4634	17	NNC	ENSMUSG00000030059.16	novel	5732	17	NA	NA	-10	790	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_16	24.0142373135188	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAATTAGTCAATTTACT	7458	False	NA	-4	True	AATAAA	-20	NA	97156093	97131436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_97132459_97133804_97133931_97135006_97135160_97135421_97135524_97137203_97137297_97137491_97137562_97138328_97138522_97140479_97140637_97141009_97141103_97144209_97144367_97145048_97145216_97145708_97145852_97147286_97147393_97149173_97149301_97150260_97150365_97152730_97153930_97155471
ENSMUSG00000030059.16_2	chr6	-	3035	16	ISM	ENSMUSG00000030059.16	ENSMUST00000095664.6	5732	17	3123	1487	3038	782	3prime_fragment	FALSE	canonical	3	74	junction_1	13.0622441495412	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACTCTTAAAATTAGTC	2079	False	NA	-12	True	AATAAA	-12	NA	97152960	97131444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_97132459_97133804_97133931_97135006_97135160_97135421_97135524_97137203_97137297_97137491_97137562_97138328_97138522_97140479_97140637_97141009_97141103_97144209_97144367_97145048_97145216_97145708_97145852_97147286_97147393_97149173_97149301_97150260_97150365_97152730
ENSMUSG00000030059.16_3	chr6	-	4253	17	FSM	ENSMUSG00000030059.16	ENSMUST00000095664.6	5732	17	-4	1483	-4	786	multi-exon	FALSE	canonical	3	74	junction_1	13.1808336231059	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCTTAAAATTAGTCAATT	7464	False	NA	-8	True	AATAAA	-16	NA	97156087	97131440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_97132459_97133804_97133931_97135006_97135160_97135421_97135524_97137203_97137297_97137491_97137562_97138328_97138522_97140479_97140637_97141009_97141103_97144209_97144367_97145048_97145216_97145708_97145852_97147286_97147393_97149173_97149301_97150260_97150365_97152730_97153930_97155842
ENSMUSG00000030060.15_15	chr6	+	1368	6	FSM	ENSMUSG00000030060.15	ENSMUST00000113606.2	1572	6	184	20	184	-20	multi-exon	FALSE	canonical	0	0	junction_4	461.093656430014	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACCTTGGCTGGCAAGA	3519	False	NA	24	True	AATAAA	-10	NA	87891471	87913591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
ENSMUSG00000030060.15_2	chr6	+	1415	7	FSM	ENSMUSG00000030060.15	ENSMUST00000032141.14	1464	7	29	20	6	-20	multi-exon	FALSE	canonical	0	0	junction_5	428.702078630629	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACCTTGGCTGGCAAGA	2993	False	NA	24	True	AATAAA	-10	NA	87890945	87913591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_87890994_87891472_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
ENSMUSG00000030061.17_0	chr6	-	2173	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	83	1	1	-1	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAACTTAAAGTATATCAA	NA	False	NA	-8	True	AATAAA	-23	NA	97182525	97160968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
ENSMUSG00000030061.17_3	chr6	-	2131	17	FSM	ENSMUSG00000030061.17	ENSMUST00000164744.8	2465	17	-4	338	1	-1	multi-exon	FALSE	canonical	3	82	junction_16	154.413292315623	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAACTTAAAGTATATCAA	NA	False	NA	-8	True	AATAAA	-23	NA	97182525	97160968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182493
ENSMUSG00000030061.17_6	chr6	-	2142	17	ISM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	300	0	212	0	3prime_fragment	FALSE	canonical	3	534	junction_12	65.1210411464682	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAAAGTATATCAAT	NA	False	NA	-7	True	AATAAA	-24	NA	97182308	97160967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266
ENSMUSG00000030061.17_7	chr6	-	2092	16	ISM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	2060	1	1972	-1	3prime_fragment	FALSE	canonical	3	534	junction_12	62.1941047581414	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAACTTAAAGTATATCAA	NA	False	NA	-8	True	AATAAA	-23	NA	97180548	97160968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434
ENSMUSG00000030062.8_1	chr6	+	2255	10	FSM	ENSMUSG00000030062.8	ENSMUST00000032143.8	3633	10	31	1347	31	570	multi-exon	FALSE	canonical	3	2268	junction_5	110.706262438987	3533	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTGCTTTTGCTGTAC	568	False	NA	7	True	AATAAA	-13	NA	88061494	88080939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
ENSMUSG00000030064.17_1	chr6	-	1359	1	FSM	ENSMUSG00000030064.17	ENSMUST00000203486.2	4230	1	3033	-162	3033	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACGTGTTTGGATGCTT	NA	False	NA	-4	True	AATAAA	-16	NA	97265189	97263830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_97263800_97265200
ENSMUSG00000030064.17_10	chr6	-	4180	13	NNC	ENSMUSG00000030064.17	novel	3996	13	NA	NA	27	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	16.9377946878833	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACACGTGTTTGGATGC	NA	False	NA	-6	True	AATAAA	-14	NA	97289314	97263832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97288854
ENSMUSG00000030064.17_2	chr6	-	3811	13	NNC	ENSMUSG00000030064.17	novel	3996	13	NA	NA	13	-5	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_12	12.9871731591854	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACACGTGTTTGGATGC	NA	False	NA	-6	True	AATAAA	-14	NA	97289378	97263832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97289287
ENSMUSG00000030064.17_21	chr6	-	1881	3	ISM	ENSMUSG00000030064.17	ENSMUST00000143698.8	3996	13	16666	-210	-4453	-5	3prime_fragment	FALSE	canonical	3	53	junction_2	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACACGTGTTTGGATGC	NA	False	NA	-6	True	AATAAA	-14	NA	97272675	97263832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_97265442_97269323_97269457_97272536
ENSMUSG00000030064.17_3	chr6	-	4937	24	FSM	ENSMUSG00000030064.17	ENSMUST00000113355.9	4913	24	-29	5	-29	-5	multi-exon	TRUE	canonical	0	0	junction_20	23.7882911898179	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACACGTGTTTGGATGC	NA	False	NA	-6	True	AATAAA	-14	NA	97594531	97263832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97300615_97300703_97302393_97302452_97305193_97305260_97306441_97306526_97330142_97330166_97330965_97331023_97373153_97373239_97389448_97389542_97398522_97398618_97400419_97400486_97505690_97505813_97594150
ENSMUSG00000030064.17_4	chr6	-	4457	20	NIC	ENSMUSG00000030064.17	novel	4311	23	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	3	10	junction_19	20.0048470580801	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACACGTGTTTGGATGC	7448	False	NA	-6	True	AATAAA	-14	NA	97373663	97263832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97300615_97300703_97302393_97302452_97305193_97305260_97306441_97306526_97330142_97330166_97330965_97331023_97373153_97373239_97373386
ENSMUSG00000030064.17_7	chr6	-	3835	13	NNC	ENSMUSG00000030064.17	novel	3996	13	NA	NA	1342	-5	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_12	14.4366431924692	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACACGTGTTTGGATGC	NA	False	NA	-6	True	AATAAA	-14	NA	97287999	97263832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97287884
ENSMUSG00000030064.17_9	chr6	-	4202	18	ISM	ENSMUSG00000030064.17	ENSMUST00000113359.8	4311	23	105122	-220	13	-1	3prime_fragment	FALSE	canonical	3	12	junction_16	18.7524392876968	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGTGTTTGGATGCTTGT	NA	False	NA	-2	True	AATAAA	-18	NA	97331125	97263828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97300615_97300703_97302393_97302452_97305193_97305260_97306441_97306526_97330142_97330166_97330965
ENSMUSG00000030067.18_0	chr6	-	2872	1	ISM	ENSMUSG00000030067.18	ENSMUST00000113326.9	7029	18	336820	1486	90	-1409	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACATCTTTGCTTTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	98906656	98903784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_98903800_98906700
ENSMUSG00000030067.18_3	chr6	-	2696	15	FSM	ENSMUSG00000030067.18	ENSMUST00000177229.8	1848	15	-33	-815	21	-86	multi-exon	FALSE	canonical	3	13	junction_6	4.40315285926355	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCATTTCTCGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	99005253	98906235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_98907196_98912234_98912402_98916679_98916750_98918496_98918619_98921579_98921682_98922307_98922388_98922494_98922697_98931281_98931366_98942987_98943076_98955093_98955199_98980160_98980366_98986864_98987019_98992384_98992475_98993488_98993627_99005124
ENSMUSG00000030067.18_4	chr6	-	2871	15	NIC	ENSMUSG00000030067.18	novel	2198	17	NA	NA	8	31	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	8.55385102435966	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAGAAAA	NA	False	NA	NA	False	TTTAAA	-39	NA	99005266	98906118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_98907196_98912234_98912402_98916679_98916750_98917955_98918126_98921579_98921682_98922307_98922385_98922494_98922697_98931281_98931366_98942987_98943076_98955093_98955199_98980160_98980366_98986864_98987019_98992384_98992475_98993488_98993627_99005124
ENSMUSG00000030079.16_0	chr6	+	1618	11	FSM	ENSMUSG00000030079.16	ENSMUST00000032165.16	1675	11	45	12	45	-12	multi-exon	FALSE	canonical	3	1160	junction_1	83.5499850388975	1228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATACTTCTCTGTAGGTT	NA	False	NA	19	True	AATAAA	-19	NA	88442435	88474542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_88442651_88444547_88444635_88450058_88450192_88456108_88456261_88459099_88459190_88459944_88460095_88461389_88461454_88462694_88462894_88468497_88468601_88473389_88473482_88474209
ENSMUSG00000030082.15_0	chr6	-	3068	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	76	28	-1	-28	multi-exon	FALSE	canonical	3	923	junction_2	46.8136802778528	2151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCTGCCTCGTCATCTT	9171	False	NA	-23	True	AATAAA	-11	NA	88495811	88480588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
ENSMUSG00000030082.15_1	chr6	-	1272	1	ISM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	14029	26	1495	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCCTCGTCATCTTTG	NA	False	NA	-21	True	AATAAA	-13	NA	88481858	88480586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_88480600_88481900
ENSMUSG00000030083.12_0	chr6	-	1811	12	FSM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	31	3	-3	-3	multi-exon	FALSE	canonical	3	139	junction_10	111.135015794021	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGAGCCTGTTGTTGG	6995	False	NA	-7	True	AATAAA	-18	NA	88818851	88812898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818750
ENSMUSG00000030083.12_1	chr6	-	1527	8	ISM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	2329	3	18	-3	3prime_fragment	FALSE	canonical	3	333	junction_3	29.2665442484229	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGAGCCTGTTGTTGG	9293	False	NA	-7	True	AATAAA	-18	NA	88816553	88812898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312
ENSMUSG00000030083.12_2	chr6	-	1775	12	NIC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	-3	-4	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	132.928800926295	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACCTGAGCCTGTTGTTG	6995	False	NA	-8	True	AATAAA	-17	NA	88818851	88812899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817854_88817883_88818750
ENSMUSG00000030084.12_0	chr6	-	2363	1	ISM	ENSMUSG00000030084.12	ENSMUST00000163139.8	9034	32	43942	2	2411	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTCGTGGCTCTGAGTC	NA	False	NA	-4	True	AATAAA	-33	NA	89295660	89293297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_89293300_89295700
ENSMUSG00000030084.12_1	chr6	-	9024	32	FSM	ENSMUSG00000030084.12	ENSMUST00000163139.8	9034	32	7	3	7	-3	multi-exon	FALSE	canonical	3	115	junction_30	20.9222334925891	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGCTCGTGGCTCTGAGT	8997	False	NA	-5	True	AATAAA	-32	NA	89339595	89293298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_89296454_89297593_89297745_89297838_89298052_89299424_89299595_89299712_89299904_89300217_89300315_89300555_89300660_89301235_89301396_89301521_89301669_89306365_89306433_89306539_89306797_89307317_89307461_89308196_89308432_89308822_89308967_89309067_89309308_89309662_89309757_89309987_89310156_89311257_89311395_89311632_89311754_89311835_89311988_89312109_89312304_89312378_89312476_89314132_89314334_89317504_89317620_89318830_89318931_89319310_89319465_89319566_89319691_89319932_89320034_89320950_89321092_89331837_89332021_89333439_89334701_89339388
ENSMUSG00000030084.12_13	chr6	-	5227	14	ISM	ENSMUSG00000030084.12	ENSMUST00000163139.8	9034	32	30643	3	1093	-3	3prime_fragment	FALSE	canonical	3	152	junction_12	13.7143297407014	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGCTCGTGGCTCTGAGT	9020	False	NA	-5	True	AATAAA	-32	NA	89308959	89293298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_89296454_89297593_89297745_89297838_89298052_89299424_89299595_89299712_89299904_89300217_89300315_89300555_89300660_89301235_89301396_89301521_89301669_89306365_89306433_89306539_89306797_89307317_89307461_89308196_89308432_89308822
ENSMUSG00000030084.12_19	chr6	-	4674	11	ISM	ENSMUSG00000030084.12	ENSMUST00000163139.8	9034	32	32844	3	3294	-3	3prime_fragment	FALSE	canonical	3	155	junction_3	13.7898513407506	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGCTCGTGGCTCTGAGT	9999	False	NA	-5	True	AATAAA	-32	NA	89306758	89293298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_89296454_89297593_89297745_89297838_89298052_89299424_89299595_89299712_89299904_89300217_89300315_89300555_89300660_89301235_89301396_89301521_89301669_89306365_89306433_89306539
ENSMUSG00000030084.12_34	chr6	-	4127	8	ISM	ENSMUSG00000030084.12	ENSMUST00000163139.8	9034	32	38321	3	334	-3	3prime_fragment	FALSE	canonical	3	155	junction_3	12.442520907381	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGCTCGTGGCTCTGAGT	NA	False	NA	-5	True	AATAAA	-32	NA	89301281	89293298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_89296454_89297593_89297745_89297838_89298052_89299424_89299595_89299712_89299904_89300217_89300315_89300555_89300660_89301235
ENSMUSG00000030086.17_0	chr6	-	1092	8	FSM	ENSMUSG00000030086.17	ENSMUST00000032172.14	1121	8	20	9	20	-9	multi-exon	FALSE	canonical	3	184	junction_4	25.4486277245203	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTCATTGGCACCCAG	NA	False	NA	-14	True	AATAAA	-23	NA	89572614	89360141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89444371_89444456_89544568_89544714_89546324_89546395_89551349_89551573_89572440
ENSMUSG00000030086.17_3	chr6	-	1008	7	FSM	ENSMUSG00000030086.17	ENSMUST00000113550.6	1042	7	16	18	16	-13	multi-exon	FALSE	canonical	3	15	junction_3	87.7648373021147	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATTCACTCATTGGCAC	NA	False	NA	-18	True	AATAAA	-19	NA	89572618	89360145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89544568_89544714_89546324_89546395_89551349_89551573_89572440
ENSMUSG00000030087.12_1	chr6	+	2325	3	FSM	ENSMUSG00000030087.12	ENSMUST00000032174.12	2373	3	19	29	19	-12	multi-exon	FALSE	canonical	3	353	junction_2	6.5	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAGAGGAAAAAAAA	NA	False	NA	-1	True	CATAAA	-19	NA	90439576	90452191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_90439708_90443401_90444506_90451101
ENSMUSG00000030087.12_15	chr6	+	1713	2	FSM	ENSMUSG00000030087.12	ENSMUST00000203607.2	2240	2	501	26	-217	-12	multi-exon	FALSE	canonical	3	353	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAGAGGAAAAAAAA	NA	False	NA	-1	True	CATAAA	-19	NA	90443882	90452191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_90444506_90451101
ENSMUSG00000030088.16_7	chr6	+	3040	23	FSM	ENSMUSG00000030088.16	ENSMUST00000032175.11	3052	23	7	5	7	4	multi-exon	FALSE	canonical	3	110	junction_1	30.2788691558217	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTACACTTTGTGTCACTG	NA	False	NA	8	True	AATAAA	-18	NA	90527793	90576146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_90527880_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
ENSMUSG00000030088.16_8	chr6	+	3114	23	FSM	ENSMUSG00000030088.16	ENSMUST00000130418.8	4175	23	24	1037	8	-3	multi-exon	FALSE	canonical	3	47	junction_1	39.2549675753126	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACACTTTGTGTCACTGCT	NA	False	NA	10	True	AATAAA	-20	NA	90527794	90576148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_90527953_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
ENSMUSG00000030089.16_0	chr6	+	2194	12	NNC	ENSMUSG00000030089.16	novel	2412	11	NA	NA	190	-6	at_least_one_novel_splicesite	TRUE	canonical	2	6	junction_2	18.656087123962	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGAACTCGGTGTCCTCCA	NA	False	NA	NA	False	AATAAA	-11	NA	90581896	90623388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_90581991_90588860_90589164_90601793_90601902_90603361_90603434_90610592_90610738_90612231_90612379_90613838_90613984_90617865_90617946_90619192_90619328_90621066_90621216_90622550_90623032_90623053
ENSMUSG00000030089.16_1	chr6	+	2245	11	FSM	ENSMUSG00000030089.16	ENSMUST00000044019.16	2412	11	165	2	165	-2	multi-exon	FALSE	canonical	3	6	junction_2	19.246038553427	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCGGTGTCCTCCATCCT	NA	False	NA	NA	False	AATAAA	-15	NA	90581871	90623392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_90581991_90588860_90589164_90601793_90601902_90603361_90603434_90610592_90610738_90612231_90612379_90613838_90613984_90617865_90617946_90619192_90619328_90621066_90621216_90622550
ENSMUSG00000030089.16_4	chr6	+	1390	7	NNC	ENSMUSG00000030089.16	novel	2324	10	NA	NA	16185	-6	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_6	13.490737563232	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGAACTCGGTGTCCTCCA	2837	False	NA	NA	False	AATAAA	-11	NA	90612313	90623388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_90612379_90613838_90613984_90617865_90617946_90619192_90619328_90621066_90621216_90622550_90623032_90623053
ENSMUSG00000030089.16_6	chr6	+	1425	6	ISM	ENSMUSG00000030089.16	ENSMUST00000032177.10	2324	10	16174	4	16174	-4	3prime_fragment	FALSE	canonical	3	32	junction_4	8.27042925125413	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTCGGTGTCCTCCATC	2826	False	NA	NA	False	AATAAA	-13	NA	90612302	90623390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_90612379_90613838_90613984_90617865_90617946_90619192_90619328_90621066_90621216_90622550
ENSMUSG00000030089.16_9	chr6	+	2308	2	ISM	ENSMUSG00000030089.16	ENSMUST00000032177.10	2324	10	23619	4	23619	-4	3prime_fragment	FALSE	canonical	3	45	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTCGGTGTCCTCCATC	374	False	NA	NA	False	AATAAA	-13	NA	90619747	90623390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_90621216_90622550
ENSMUSG00000030091.18_14	chr6	-	2473	8	ISM	ENSMUSG00000030091.18	ENSMUST00000113509.2	6893	40	91470	1	157	-1	3prime_fragment	FALSE	canonical	3	404	junction_2	26.4189171555813	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGATGCGGTGGTTCTTG	NA	False	NA	-5	True	AATAAA	-17	NA	91002331	90990052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203
ENSMUSG00000030091.18_18	chr6	-	1955	5	ISM	ENSMUSG00000030091.18	ENSMUST00000113509.2	6893	40	97952	0	-1438	0	3prime_fragment	FALSE	canonical	3	404	junction_2	28.6792607994	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGCGGTGGTTCTTGG	NA	False	NA	-4	True	AATAAA	-18	NA	90995849	90990051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718
ENSMUSG00000030091.18_3	chr6	-	7016	40	FSM	ENSMUSG00000030091.18	ENSMUST00000032179.14	7037	40	19	2	9	0	multi-exon	FALSE	non_canonical	3	302	junction_34	44.9993644487226	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGCGGTGGTTCTTGG	NA	False	NA	-4	True	AATAAA	-18	NA	91093792	90990051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203_91002341_91003740_91003962_91005707_91005884_91007065_91007241_91008603_91008696_91011705_91011865_91013334_91013467_91014606_91014688_91017528_91017709_91017829_91017893_91019236_91019373_91019487_91019616_91020728_91020858_91030353_91030456_91030546_91030652_91031371_91031479_91032206_91032400_91037543_91037718_91039699_91039922_91042139_91042286_91046145_91046345_91047113_91047270_91048823_91048962_91050174_91050316_91051229_91051337_91052888_91052958_91053539_91053699_91062840_91062974_91064814_91064966_91066816_91066914_91075547_91075680_91078244_91078382_91093599
ENSMUSG00000030091.18_6	chr6	-	3589	16	ISM	ENSMUSG00000030091.18	ENSMUST00000113509.2	6893	40	76203	0	-10358	0	3prime_fragment	FALSE	canonical	3	329	junction_12	42.8482593967752	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGCGGTGGTTCTTGG	6485	False	NA	-4	True	AATAAA	-18	NA	91017598	90990051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203_91002341_91003740_91003962_91005707_91005884_91007065_91007241_91008603_91008696_91011705_91011865_91013334_91013467_91014606_91014688_91017528
ENSMUSG00000030094.9_0	chr6	-	3594	16	FSM	ENSMUSG00000030094.9	ENSMUST00000032182.5	3634	16	34	6	30	-6	multi-exon	FALSE	canonical	3	81	junction_2	18.0017283120878	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACCCCTGGCTGCAAA	403	False	NA	-6	True	AATAAA	-10	NA	91492836	91466292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_91467249_91468202_91468293_91469252_91469347_91469823_91469994_91470086_91470222_91473069_91473152_91475011_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
ENSMUSG00000030094.9_20	chr6	-	2382	10	ISM	ENSMUSG00000030094.9	ENSMUST00000150279.3	4347	13	-62	5445	27	-5445	5prime_fragment	FALSE	canonical	3	87	junction_8	18.5099239315189	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATACAAGGCTGTAGAAG	400	False	NA	NA	False	AATAAA	-13	NA	91492839	91474699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
ENSMUSG00000030094.9_24	chr6	-	2054	9	ISM	ENSMUSG00000030094.9	ENSMUST00000150279.3	4347	13	-71	6856	18	-6856	5prime_fragment	FALSE	canonical	3	87	junction_7	19.6273883896967	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGAAGACATACTTTTCT	391	False	NA	NA	False	AATATA	-13	NA	91492848	91476110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
ENSMUSG00000030094.9_4	chr6	-	1965	8	ISM	ENSMUSG00000030094.9	ENSMUST00000032182.5	3634	16	16344	9	16251	-9	3prime_fragment	FALSE	canonical	3	81	junction_2	10.0813021510728	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAAAAACCCCTGGCTGC	NA	False	NA	-9	True	AATAAA	-7	NA	91476526	91466295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_91467249_91468202_91468293_91469252_91469347_91469823_91469994_91470086_91470222_91473069_91473152_91475011_91475173_91476246
ENSMUSG00000030095.11_0	chr6	+	2864	12	FSM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	29	10	5	-10	multi-exon	FALSE	canonical	3	107	junction_7	13.7209497779825	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGATCTTGCCAGTCGTT	9717	False	NA	NA	False	AATAAA	-20	NA	91450713	91465435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_91450881_91454226_91454377_91455187_91455323_91455687_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
ENSMUSG00000030095.11_11	chr6	+	1335	1	ISM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	13416	10	10519	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGATCTTGCCAGTCGTT	NA	False	NA	NA	False	AATAAA	-20	NA	91464100	91465435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_91464100_91465400
ENSMUSG00000030095.11_8	chr6	+	2414	9	ISM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	5000	11	2103	-11	3prime_fragment	FALSE	canonical	3	107	junction_4	12.5499003980111	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGATCTTGCCAGTCGT	NA	False	NA	NA	False	AATAAA	-19	NA	91455684	91465434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
ENSMUSG00000030095.11_9	chr6	+	2121	5	ISM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	8234	10	5337	-10	3prime_fragment	FALSE	canonical	3	110	junction_3	8.89873586527884	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGATCTTGCCAGTCGTT	NA	False	NA	NA	False	AATAAA	-20	NA	91458918	91465435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
ENSMUSG00000030096.9_1	chr6	+	6123	15	FSM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	51	12	9	-12	multi-exon	FALSE	canonical	3	310	junction_10	29.4144383538675	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCCAAGAACGTCTGGT	NA	False	NA	19	True	AATAAA	-13	NA	91661084	91736035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
ENSMUSG00000030096.9_62	chr6	+	2954	1	ISM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	72052	8	5921	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	268	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGAACGTCTGGTGTGT	6867	False	NA	23	True	AATAAA	-17	NA	91733085	91736039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_91733100_91736000
ENSMUSG00000030101.16_1	chr6	-	2578	9	FSM	ENSMUSG00000030101.16	ENSMUST00000032191.16	2593	9	12	3	12	-3	multi-exon	FALSE	canonical	3	77	junction_4	15.6204993518133	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACTCAGACTTCACTTTTT	2484	False	NA	NA	False	AATAAA	-12	NA	108162531	108083991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_108085548_108095580_108095641_108121551_108121666_108129187_108129303_108130073_108130197_108131919_108132003_108150316_108150392_108152948_108153123_108162253
ENSMUSG00000030101.16_12	chr6	-	1762	8	NNC	ENSMUSG00000030101.16	novel	452	2	NA	NA	-11	1928	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	32.630898090676	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAAAATGGTTTGGTCTT	2487	False	NA	NA	False	AATAAA	-23	NA	108162528	108119345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_108120149_108121551_108121666_108129187_108129303_108130073_108130197_108131919_108132003_108150316_108150392_108152948_108153123_108162253
ENSMUSG00000030102.12_1	chr6	+	9776	59	NIC	ENSMUSG00000030102.12	novel	9870	62	NA	NA	1	0	combination_of_known_junctions	TRUE	non_canonical	0	0	junction_26	15.3465709974349	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTGACTGGCTGGTGG	NA	False	NA	4	True	AATAAA	-15	NA	108190057	108528070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224_108218296_108316467_108316584_108326558_108326646_108328953_108329113_108331567_108331667_108333160_108333245_108333351_108333499_108340570_108340667_108342259_108342305_108345971_108346127_108353722_108353823_108354645_108354807_108355122_108355265_108357876_108358036_108358148_108358322_108359065_108359186_108360581_108360777_108363580_108363833_108364324_108364467_108365145_108365327_108366327_108366516_108368791_108368931_108369491_108369547_108370865_108371032_108371195_108371367_108371795_108371862_108372936_108373075_108376210_108376337_108378273_108378475_108380232_108380485_108382360_108382487_108383050_108383180_108387769_108387891_108390729_108390915_108393770_108393920_108394849_108394962_108415260_108415394_108417457_108417649_108447983_108448165_108450367_108450622_108458183_108458385_108459857_108459969_108462203_108462300_108465446_108465570_108466775_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
ENSMUSG00000030102.12_48	chr6	+	3870	18	ISM	ENSMUSG00000030102.12	ENSMUST00000203615.3	9761	62	257954	0	12453	0	3prime_fragment	FALSE	canonical	3	64	junction_9	6.09725106816468	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTGACTGGCTGGTGG	NA	False	NA	4	True	AATAAA	-15	NA	108448116	108528070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_108448165_108450367_108450622_108458183_108458385_108459857_108459969_108462203_108462300_108465446_108465570_108466775_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
ENSMUSG00000030102.12_49	chr6	+	3651	17	ISM	ENSMUSG00000030102.12	ENSMUST00000203615.3	9761	62	260376	0	14875	0	3prime_fragment	FALSE	canonical	3	64	junction_8	6.15140989936453	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTGACTGGCTGGTGG	NA	False	NA	4	True	AATAAA	-15	NA	108450538	108528070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_108450622_108458183_108458385_108459857_108459969_108462203_108462300_108465446_108465570_108466775_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
ENSMUSG00000030102.12_50	chr6	+	3467	16	ISM	ENSMUSG00000030102.12	ENSMUST00000203615.3	9761	62	268121	1	-12479	-1	3prime_fragment	FALSE	canonical	3	64	junction_7	6.22896460095897	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTGACTGGCTGGTG	NA	False	NA	3	True	AATAAA	-14	NA	108458283	108528069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_108458385_108459857_108459969_108462203_108462300_108465446_108465570_108466775_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
ENSMUSG00000030102.12_54	chr6	+	3096	13	ISM	ENSMUSG00000030102.12	ENSMUST00000203615.3	9761	62	275338	10	-5262	-10	3prime_fragment	FALSE	canonical	3	64	junction_4	6.72629582724069	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAATCCTATGCAGTGAC	NA	False	NA	-6	True	AATAAA	-5	NA	108465500	108528060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_108465570_108466775_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
ENSMUSG00000030102.12_6	chr6	+	9749	59	NIC	ENSMUSG00000030102.12	novel	9870	62	NA	NA	1	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_26	14.5585047121273	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTGACTGGCTGGTGG	NA	False	NA	4	True	AATAAA	-15	NA	108190057	108528070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224_108218296_108316467_108316584_108326558_108326646_108328953_108329113_108331567_108331667_108333160_108333245_108333351_108333499_108340570_108340667_108342259_108342305_108345971_108346127_108353722_108353823_108354645_108354807_108355122_108355265_108357876_108358036_108358148_108358322_108359065_108359186_108360581_108360777_108363580_108363833_108364324_108364467_108365145_108365300_108366327_108366516_108368791_108368931_108369491_108369547_108370865_108371032_108371195_108371367_108371795_108371862_108372936_108373075_108376210_108376337_108378273_108378475_108380232_108380485_108382360_108382487_108383050_108383180_108387769_108387891_108390729_108390915_108393770_108393920_108394849_108394962_108415260_108415394_108417457_108417649_108447983_108448165_108450367_108450622_108458183_108458385_108459857_108459969_108462203_108462300_108465446_108465570_108466775_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
ENSMUSG00000030102.12_60	chr6	+	1024	1	ISM	ENSMUSG00000030102.12	ENSMUST00000032192.9	9870	62	336990	0	31354	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTGACTGGCTGGTGG	NA	False	NA	4	True	AATAAA	-15	NA	108527046	108528070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_108527000_108528100
ENSMUSG00000030102.12_93	chr6	+	2987	12	ISM	ENSMUSG00000030102.12	ENSMUST00000203615.3	9761	62	276662	1	-3938	-1	3prime_fragment	FALSE	canonical	3	64	junction_3	7.02416137166613	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTGACTGGCTGGTG	NA	False	NA	3	True	AATAAA	-14	NA	108466824	108528069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
ENSMUSG00000030103.12_2	chr6	+	2934	5	FSM	ENSMUSG00000030103.12	ENSMUST00000032194.11	3113	5	24	155	24	-155	multi-exon	FALSE	canonical	3	205	junction_3	24.2899156029822	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAGAAATGGTCTCCTTG	NA	False	NA	7	True	AATAAA	-19	NA	108637613	108643731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_108637954_108638121_108638192_108638465_108638574_108639481_108639606_108641439
ENSMUSG00000030103.12_8	chr6	+	1660	1	FSM	ENSMUSG00000030103.12	ENSMUST00000204550.2	2620	1	2065	-1105	2065	-155	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAGAAATGGTCTCCTTG	NA	False	NA	7	True	AATAAA	-19	NA	108642071	108643731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_108642100_108643700
ENSMUSG00000030104.10_1	chr6	+	5898	12	FSM	ENSMUSG00000030104.10	ENSMUST00000089162.5	5817	12	-83	2	-50	-2	multi-exon	FALSE	canonical	3	297	junction_5	22.3007245184901	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGTCACTGTGTTTCT	NA	False	NA	8	True	ATTAAA	-13	NA	108805551	108836307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_108806195_108813700_108813774_108818560_108818665_108819887_108820060_108821787_108821972_108823632_108823808_108825670_108825792_108826355_108826527_108828170_108828245_108829450_108829548_108831205_108831410_108832427
ENSMUSG00000030104.10_31	chr6	+	2610	1	ISM	ENSMUSG00000030104.10	ENSMUST00000204804.3	6077	12	28102	4	4352	4	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACTGTGTTTCTCCTTTG	4568	False	NA	14	True	ATTAAA	-19	NA	108833703	108836313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_108833700_108836300
ENSMUSG00000030105.9_1	chr6	+	2732	7	FSM	ENSMUSG00000030105.9	ENSMUST00000032196.9	4443	7	-14	1725	-14	-1725	multi-exon	TRUE	canonical	3	458	junction_6	33.5480583972042	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATTTTACCTTAAAATGT	NA	False	NA	24	True	AATAAA	-24	NA	108760045	108800514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_108760339_108790587_108790669_108791944_108792019_108792218_108792313_108795205_108795274_108795503_108795575_108798463
ENSMUSG00000030105.9_19	chr6	+	1602	1	ISM	ENSMUSG00000030105.9	ENSMUST00000032196.9	4443	7	38855	1723	27057	-1723	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTACCTTAAAATGTAT	4013	False	NA	26	True	AATAAA	-26	NA	108798914	108800516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_108798900_108800500
ENSMUSG00000030110.14_1	chr6	-	1104	4	ISM	ENSMUSG00000030110.14	ENSMUST00000088790.9	4497	19	31781	32	31196	-32	3prime_fragment	FALSE	canonical	1	2	junction_2	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTCTTGGATTAAAT	NA	False	NA	NA	False	AGTAAA	-22	NA	118142898	118131558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_118132397_118140148_118140249_118141683_118141822_118142870
ENSMUSG00000030110.14_5	chr6	-	4099	19	FSM	ENSMUSG00000030110.14	ENSMUST00000088790.9	4497	19	358	40	-227	-40	multi-exon	FALSE	canonical	0	0	junction_9	1.69603750249708	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTCCTTCTTTGTCTTG	NA	False	NA	NA	False	AGTAAA	-14	NA	118174321	118131566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_118132397_118140148_118140249_118141683_118141822_118142870_118142942_118144856_118144980_118145082_118145298_118146082_118146191_118146793_118146942_118150375_118150630_118151197_118151318_118151967_118152079_118152683_118152810_118153138_118153398_118155425_118155629_118156232_118156429_118157178_118157424_118158785_118159074_118161137_118161402_118174021
ENSMUSG00000030111.10_0	chr6	+	4591	36	FSM	ENSMUSG00000030111.10	ENSMUST00000032203.9	4605	36	6	8	6	-8	multi-exon	FALSE	canonical	3	32	junction_3	9.3958740402153	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCATCACCATTCCTTCAT	NA	False	NA	19	True	AATAAA	-17	NA	121613192	121656178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_121613355_121615234_121615419_121616164_121616322_121616473_121616527_121617943_121617965_121618230_121618400_121618947_121619033_121621073_121621195_121621852_121621968_121622110_121622221_121623757_121623920_121624907_121625136_121625563_121625628_121626725_121626869_121631423_121631574_121634338_121634507_121634891_121634968_121636245_121636373_121636878_121637108_121637801_121637929_121638385_121638508_121639351_121639404_121644073_121644158_121645004_121645182_121645487_121645576_121646470_121646628_121646894_121646970_121647860_121648042_121650425_121650650_121651689_121651909_121652077_121652206_121653009_121653101_121653862_121653932_121654940_121655044_121655477_121655520_121656050
ENSMUSG00000030111.10_12	chr6	+	2210	18	ISM	ENSMUSG00000030111.10	ENSMUST00000032203.9	4605	36	23782	4	1397	-4	3prime_fragment	FALSE	canonical	3	38	junction_4	8.58178645874677	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACCATTCCTTCATTAAC	695	False	NA	23	True	AATAAA	-21	NA	121636968	121656182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_121637108_121637801_121637929_121638385_121638508_121639351_121639404_121644073_121644158_121645004_121645182_121645487_121645576_121646470_121646628_121646894_121646970_121647860_121648042_121650425_121650650_121651689_121651909_121652077_121652206_121653009_121653101_121653862_121653932_121654940_121655044_121655477_121655520_121656050
ENSMUSG00000030111.10_13	chr6	+	1885	16	ISM	ENSMUSG00000030111.10	ENSMUST00000032203.9	4605	36	25261	1	2876	-1	3prime_fragment	FALSE	canonical	3	38	junction_2	8.46850373770689	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATTCCTTCATTAACTGA	154	False	NA	26	True	AATAAA	-24	NA	121638447	121656185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_121638508_121639351_121639404_121644073_121644158_121645004_121645182_121645487_121645576_121646470_121646628_121646894_121646970_121647860_121648042_121650425_121650650_121651689_121651909_121652077_121652206_121653009_121653101_121653862_121653932_121654940_121655044_121655477_121655520_121656050
ENSMUSG00000030116.15_0	chr6	+	783	10	FSM	ENSMUSG00000030116.15	ENSMUST00000148517.8	1506	10	65	658	-11	0	multi-exon	FALSE	canonical	1	2	junction_5	61.5529481998934	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	NA	False	NA	4	True	AATACA	-15	NA	122490606	122505591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_122490692_122491299_122491360_122492306_122492343_122497537_122497571_122497854_122497888_122498851_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030116.15_2	chr6	+	547	5	ISM	ENSMUSG00000030116.15	ENSMUST00000142896.8	425	9	8206	-294	-617	0	3prime_fragment	FALSE	canonical	3	18	junction_1	53.3479146733966	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	7114	False	NA	4	True	AATACA	-15	NA	122498840	122505591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030116.15_3	chr6	+	3563	3	ISM	ENSMUSG00000030116.15	ENSMUST00000118626.8	748	9	9206	-1	366	1	3prime_fragment	FALSE	canonical	3	140	junction_2	7	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGGTTTGCTGATTTCTG	8097	False	NA	5	True	AATACA	-16	NA	122499823	122505592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_122502998_122503745_122503820_122505277
ENSMUSG00000030116.15_4	chr6	+	537	5	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	355	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	33.0331273118365	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	8086	False	NA	4	True	AATACA	-15	NA	122499812	122505591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_122499850_122501445_122501470_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030116.15_8	chr6	+	504	4	FSM	ENSMUSG00000030116.15	ENSMUST00000126357.2	2491	4	1986	1	1986	-1	multi-exon	FALSE	canonical	3	120	junction_1	13.9522996909709	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGGTTTGCTGATTTCTGG	9717	False	NA	6	True	AATACA	-17	NA	122501443	122505593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_122501470_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030117.6_0	chr6	-	1214	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	66	845	66	-845	multi-exon	FALSE	canonical	3	704	junction_1	0	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGGCTTATGCTCTCT	9913	False	NA	-28	True	AATAAA	-12	NA	122586980	122583206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_122584095_122586654
ENSMUSG00000030117.6_2	chr6	-	540	1	ISM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	3300	845	3037	-845	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGGCTTATGCTCTCT	9584	False	NA	-28	True	AATAAA	-12	NA	122583746	122583206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_122583200_122583700
ENSMUSG00000030120.15_0	chr6	+	1473	9	FSM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	-5	7	2	-6	multi-exon	FALSE	canonical	3	3449	junction_8	252.103029533562	2812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGTGAAGATTCTGGC	NA	False	NA	20	True	AATAAA	-10	NA	124908389	124913101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912585
ENSMUSG00000030120.15_1	chr6	+	1658	8	ISM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	-13	7	-6	-6	intron_retention	FALSE	canonical	3	3577	junction_4	212.973122765311	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGTGAAGATTCTGGC	NA	False	NA	20	True	AATAAA	-10	NA	124908381	124913101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195
ENSMUSG00000030120.15_4	chr6	+	1489	9	FSM	ENSMUSG00000030120.15	ENSMUST00000032214.14	1451	9	-44	6	0	-6	multi-exon	FALSE	canonical	3	152	junction_8	1260.71298651795	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGTGAAGATTCTGGC	NA	False	NA	20	True	AATAAA	-10	NA	124908394	124913101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912564
ENSMUSG00000030122.13_0	chr6	-	1145	5	FSM	ENSMUSG00000030122.13	ENSMUST00000032216.7	1149	5	2	2	2	-2	multi-exon	FALSE	canonical	3	521	junction_3	90.7837402842601	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCGTCTCCTGCTTTCCC	NA	False	NA	-8	True	AATAAA	-24	NA	124894907	124890645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124894522
ENSMUSG00000030122.13_14	chr6	-	657	3	ISM	ENSMUSG00000030122.13	ENSMUST00000181150.2	629	4	542	-366	-8	-2	3prime_fragment	FALSE	canonical	3	591	junction_2	78.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCGTCTCCTGCTTTCCC	NA	False	NA	-8	True	AATAAA	-24	NA	124891645	124890645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124891196_124891370_124891430_124891597
ENSMUSG00000030122.13_2	chr6	-	513	1	ISM	ENSMUSG00000030122.13	ENSMUST00000032216.7	1149	5	3751	2	479	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCGTCTCCTGCTTTCCC	NA	False	NA	-8	True	AATAAA	-24	NA	124891158	124890645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124890600_124891200
ENSMUSG00000030122.13_4	chr6	-	753	4	FSM	ENSMUSG00000030122.13	ENSMUST00000181150.2	629	4	242	-366	242	-2	multi-exon	FALSE	canonical	3	521	junction_3	94.9139961579253	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCGTCTCCTGCTTTCCC	NA	False	NA	-8	True	AATAAA	-24	NA	124891945	124890645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880
ENSMUSG00000030123.16_3	chr6	-	6766	36	FSM	ENSMUSG00000030123.16	ENSMUST00000015511.15	6907	36	133	8	133	-8	multi-exon	TRUE	canonical	1	1	junction_1	1.84191559557557	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTACTATGGGCTTTA	NA	False	NA	NA	False	AATAAA	-12	NA	115971833	115931779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_115932818_115932965_115933041_115933555_115933697_115934486_115934635_115935487_115935652_115935949_115936055_115936270_115936306_115936737_115936802_115936878_115936983_115937386_115937544_115937676_115937824_115939301_115939501_115939655_115939787_115940191_115940297_115940851_115940965_115941036_115941145_115942817_115942933_115943454_115943605_115943697_115943956_115944145_115944237_115944317_115944486_115944709_115944850_115944931_115945032_115945628_115945781_115946268_115946424_115946836_115946931_115947119_115947210_115949432_115949538_115952911_115953015_115953330_115953440_115953530_115953709_115954903_115955034_115955118_115955220_115955439_115955572_115957538_115957716_115970449
ENSMUSG00000030124.3_1	chr6	-	1297	6	ISM	ENSMUSG00000030124.3	ENSMUST00000032217.2	2001	8	1457	-4	-197	4	3prime_fragment	FALSE	canonical	0	0	junction_5	4.4988887516808	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGGAGTCTGTCTTTCT	993	False	NA	NA	False	AATAAA	-22	NA	124887211	124881319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124881564_124881800_124881932_124882218_124882456_124885339_124885616_124886188_124886453_124887066
ENSMUSG00000030124.3_3	chr6	-	1993	8	FSM	ENSMUSG00000030124.3	ENSMUST00000032217.2	2001	8	6	2	6	-2	multi-exon	TRUE	canonical	0	0	junction_5	4.83186700722507	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGCAAGCTGGAGTCTGT	NA	False	NA	NA	False	AATAAA	-16	NA	124888662	124881325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124881564_124881800_124881932_124882218_124882456_124885339_124885616_124886188_124886453_124887066_124887360_124887726_124887875_124888256
ENSMUSG00000030126.18_0	chr6	-	3183	6	FSM	ENSMUSG00000030126.18	ENSMUST00000088896.10	5838	6	96	2559	96	0	multi-exon	FALSE	canonical	2	10	junction_4	4.84148737476408	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAGCCGTGTGGATAT	NA	False	NA	NA	False	AATAAA	-15	NA	116170351	115998130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_115999363_116001762_116001899_116019831_116020767_116110727_116111419_116115155_116115212_116170218
ENSMUSG00000030126.18_10	chr6	-	1696	3	ISM	ENSMUSG00000030126.18	ENSMUST00000172510.4	2612	4	13813	-177	13757	0	3prime_fragment	FALSE	canonical	3	18	junction_2	3	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAGCCGTGTGGATAT	NA	False	NA	NA	False	AATAAA	-15	NA	116020159	115998130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_115999363_116001762_116001899_116019831
ENSMUSG00000030126.18_2	chr6	-	2593	1	ISM	ENSMUSG00000030126.18	ENSMUST00000088896.10	5838	6	172273	10	35742	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAATTGACTCAGCTTTG	NA	False	NA	-9	True	AATAAA	-18	NA	115998174	115995581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_115995600_115998200
ENSMUSG00000030126.18_9	chr6	-	190	1	FSM	ENSMUSG00000030126.18	ENSMUST00000204574.2	2697	1	1292	1215	1292	-1215	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAAATTCCTCTATCGT	NA	False	NA	NA	False	NA	NA	NA	116149982	116149792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_116149800_116150000
ENSMUSG00000030127.16_0	chr6	-	1734	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	23	-7	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATGCCAGGAACTGG	NA	False	NA	-16	True	AATAAA	-19	NA	124942452	124935785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUSG00000030127.16_1	chr6	-	1238	8	FSM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	49	41	23	-41	multi-exon	FALSE	canonical	3	371	junction_1	503.213915644191	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTCTGTCCCTTTTGTC	NA	False	NA	-13	True	CATAAA	-15	NA	124942452	124935416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUSG00000030127.16_10	chr6	-	1897	7	ISM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	47	410	21	-7	5prime_fragment	FALSE	canonical	3	1332	junction_6	190.502333027417	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATGCCAGGAACTGG	NA	False	NA	-16	True	AATAAA	-19	NA	124942454	124935785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUSG00000030127.16_5	chr6	-	1693	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	25	-7	combination_of_known_junctions	FALSE	canonical	3	167	junction_7	583.751379843669	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATGCCAGGAACTGG	NA	False	NA	-16	True	AATAAA	-19	NA	124942228	124935785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
ENSMUSG00000030127.16_9	chr6	-	1649	7	ISM	ENSMUSG00000030127.16	ENSMUST00000032220.15	1817	8	517	7	276	-7	3prime_fragment	FALSE	canonical	3	1123	junction_1	263.130512610504	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATGCCAGGAACTGG	NA	False	NA	-16	True	AATAAA	-19	NA	124941894	124935785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686
ENSMUSG00000030134.12_0	chr6	+	3238	13	FSM	ENSMUSG00000030134.12	ENSMUST00000203482.2	2227	13	-36	-975	-36	0	multi-exon	FALSE	canonical	3	24	junction_10	5.92780641459291	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTCTCTCTCTCTCT	NA	False	NA	3	True	NA	NA	NA	118043343	118068507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_118043424_118057318_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066188_118066395_118066469_118066776
ENSMUSG00000030134.12_1	chr6	+	3323	14	NNC	ENSMUSG00000030134.12	novel	2227	13	NA	NA	-52	-3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	11.8646209703147	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCCCTTGTCTCTCTCTC	NA	False	NA	0	True	NA	NA	NA	118043327	118068504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_118043424_118054858_118054931_118057318_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066188_118066395_118066469_118066776
ENSMUSG00000030134.12_15	chr6	+	1445	1	ISM	ENSMUSG00000030134.12	ENSMUST00000164960.4	3284	13	78662	2	23681	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTTGTCTCTCTCTCT	677	False	NA	1	True	NA	NA	NA	118067060	118068505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_118067100_118068500
ENSMUSG00000030134.12_25	chr6	+	3163	12	ISM	ENSMUSG00000030134.12	ENSMUST00000203482.2	2227	13	13934	-975	13934	0	3prime_fragment	FALSE	canonical	3	24	junction_9	6.11055177338402	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTCTCTCTCTCTCT	2478	False	NA	3	True	NA	NA	NA	118057313	118068507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066188_118066395_118066469_118066776
ENSMUSG00000030134.12_5	chr6	+	3213	13	NNC	ENSMUSG00000030134.12	novel	2227	13	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_11	9.46484724300046	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTCTCTCTCTCTCT	NA	False	NA	3	True	NA	NA	NA	118043343	118068507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_118043424_118057318_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066188_118066420_118066469_118066776
ENSMUSG00000030137.9_0	chr6	+	1514	5	NNC	ENSMUSG00000030137.9	novel	2263	5	NA	NA	-8365	-759	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	2.06155281280883	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTATGCCTCTTTCTTTG	NA	False	NA	1	True	AATATA	-12	NA	121179289	121203054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_121179441_121197342_121197566_121198259_121198409_121199692_121200374_121202744
ENSMUSG00000030137.9_3	chr6	+	1355	4	ISM	ENSMUSG00000030137.9	ENSMUST00000032233.9	2263	5	9690	765	9690	-765	3prime_fragment	FALSE	canonical	3	58	junction_2	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCATGACTATGCCTCTT	NA	False	NA	-5	True	AATATA	-6	NA	121197344	121203048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_121197566_121198259_121198409_121199692_121200374_121202744
ENSMUSG00000030138.9_1	chr6	-	4277	23	FSM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	63	5	1	-5	multi-exon	FALSE	canonical	2	285	junction_22	59.9717047606688	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATTTTGGCCTAGTGAT	8348	False	NA	-6	True	ATTAAA	-11	NA	118396372	118360346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_118360837_118361199_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369686_118369763_118369953_118373087_118373268_118373723_118373798_118375034_118375117_118380049_118380208_118381216_118381319_118381540_118382302_118384971_118385112_118388442_118388637_118388915_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396248
ENSMUSG00000030138.9_10	chr6	-	2551	14	ISM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	14468	5	14398	-5	3prime_fragment	FALSE	canonical	3	339	junction_13	47.6483668545452	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATTTTGGCCTAGTGAT	NA	False	NA	-6	True	ATTAAA	-11	NA	118381967	118360346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_118360837_118361199_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369686_118369763_118369953_118373087_118373268_118373723_118373798_118375034_118375117_118380049_118380208_118381216_118381319_118381540
ENSMUSG00000030145.15_1	chr6	-	3752	5	ISM	ENSMUSG00000030145.15	ENSMUST00000069292.14	3683	6	420	15	-43	-15	3prime_fragment	FALSE	canonical	3	18	junction_1	3.63145976158349	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATACCCTTGGAATTTCA	NA	False	NA	NA	False	AATAAA	-9	NA	118432069	118404294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_118407356_118409817_118409908_118410265_118410393_118430806_118430849_118431637
ENSMUSG00000030145.15_2	chr6	-	3637	6	FSM	ENSMUSG00000030145.15	ENSMUST00000069292.14	3683	6	36	10	6	-10	multi-exon	FALSE	canonical	3	13	junction_5	4.48998886412873	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTTGGAATTTCATTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	118432453	118404289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_118407356_118409817_118409908_118410265_118410393_118430806_118430849_118431637_118431873_118432376
ENSMUSG00000030161.9_0	chr6	+	1765	4	FSM	ENSMUSG00000030161.9	ENSMUST00000032264.9	1820	4	33	22	-7	-22	multi-exon	FALSE	canonical	3	115	junction_2	5.71547606649408	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTCTACCTGGACTCAG	NA	False	NA	12	True	AATAAA	-16	NA	129510155	129519287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_129510500_129514453_129514533_129515532_129515652_129518064
ENSMUSG00000030161.9_2	chr6	+	1049	1	ISM	ENSMUSG00000030161.9	ENSMUST00000032264.9	1820	4	8116	22	7725	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTCTACCTGGACTCAG	706	False	NA	12	True	AATAAA	-16	NA	129518238	129519287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_129518200_129519300
ENSMUSG00000030166.15_0	chr6	+	1910	11	FSM	ENSMUSG00000030166.15	ENSMUST00000161816.8	1603	11	-9	-298	-9	-21	multi-exon	FALSE	canonical	3	22	junction_8	12.9769025580067	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-28	NA	119879679	119898574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_119879797_119888008_119888103_119889962_119890065_119890859_119890954_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119895748_119895886_119896039_119897070_119897152_119897767
ENSMUSG00000030166.15_11	chr6	+	1674	12	FSM	ENSMUSG00000030166.15	ENSMUST00000162461.7	1693	12	16	3	-9	-3	multi-exon	FALSE	canonical	3	22	junction_8	13.1028985500622	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTTTCCTTTGGCTTCA	NA	False	NA	0	True	ATTAAA	-13	NA	119879679	119899781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_119879797_119888008_119888103_119889962_119890065_119890859_119890954_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119895748_119895886_119896039_119897070_119897152_119897767_119897990_119899432
ENSMUSG00000030166.15_2	chr6	+	2790	9	NIC	ENSMUSG00000030166.15	novel	1604	11	NA	NA	11	-1	intron_retention	FALSE	canonical	3	31	junction_8	11.4209237805004	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTCCTTTGGCTTCAGG	NA	False	NA	2	True	ATTAAA	-15	NA	119879676	119899783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_119879797_119888008_119888103_119889962_119891199_119892194_119892314_119892927_119893004_119895547_119896039_119897070_119897152_119897767_119897990_119899432
ENSMUSG00000030166.15_26	chr6	+	1894	7	NIC	ENSMUSG00000030166.15	novel	1604	11	NA	NA	-276	-10	intron_retention	FALSE	canonical	3	31	junction_6	12.7986544431653	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGACCTCATCTTTCCTTT	NA	False	NA	-7	True	ATTAAA	-6	NA	119890635	119899774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_119891199_119892194_119892314_119892927_119893004_119895547_119896039_119897070_119897152_119897767_119897990_119899432
ENSMUSG00000030166.15_3	chr6	+	4682	8	NIC	ENSMUSG00000030166.15	novel	1604	11	NA	NA	-15	-2	intron_retention	FALSE	canonical	3	31	junction_7	12.1889880044009	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTCCTTTGGCTTCAG	NA	False	NA	1	True	ATTAAA	-14	NA	119879643	119899782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_119879797_119888008_119891199_119892194_119892314_119892927_119893004_119895547_119896039_119897070_119897152_119897767_119897990_119899432
ENSMUSG00000030166.15_4	chr6	+	1734	10	NIC	ENSMUSG00000030166.15	novel	1604	11	NA	NA	1	-1	intron_retention	FALSE	canonical	3	14	junction_3	15.4488403016753	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTCCTTTGGCTTCAGG	NA	False	NA	2	True	ATTAAA	-15	NA	119879666	119899783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_119879797_119888008_119888103_119889962_119890065_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119896039_119897070_119897152_119897767_119897990_119899432
ENSMUSG00000030168.14_0	chr6	-	1803	1	ISM	ENSMUSG00000030168.14	ENSMUST00000032272.13	4184	8	62745	7	33727	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGAGTTTTGTTGTGTT	NA	False	NA	-7	True	AATAAA	-14	NA	119331920	119330117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_119330100_119331900
ENSMUSG00000030168.14_1	chr6	-	4129	8	FSM	ENSMUSG00000030168.14	ENSMUST00000169744.8	3489	8	-38	-602	-38	-13	multi-exon	TRUE	canonical	3	86	junction_7	15.2168005969771	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGAAAATGAGTTTTGT	NA	False	NA	-13	True	AATAAA	-8	NA	119365685	119330123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119365442
ENSMUSG00000030168.14_3	chr6	-	3981	8	FSM	ENSMUSG00000030168.14	ENSMUST00000032272.13	4184	8	190	13	-39	-13	multi-exon	FALSE	canonical	3	26	junction_7	32.1685611510775	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGAAAATGAGTTTTGT	7515	False	NA	-13	True	AATAAA	-8	NA	119394475	119330123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119394380
ENSMUSG00000030168.14_4	chr6	-	2939	2	ISM	ENSMUSG00000030168.14	ENSMUST00000169744.8	3489	8	31304	-608	31304	-7	3prime_fragment	FALSE	canonical	3	98	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGAGTTTTGTTGTGTT	NA	False	NA	-7	True	AATAAA	-14	NA	119334343	119330117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_119332890_119334176
ENSMUSG00000030168.14_7	chr6	-	3278	4	ISM	ENSMUSG00000030168.14	ENSMUST00000169744.8	3489	8	29212	-608	29212	-7	3prime_fragment	FALSE	canonical	3	98	junction_1	4.49691252107735	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGAGTTTTGTTGTGTT	NA	False	NA	-7	True	AATAAA	-14	NA	119336435	119330117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311
ENSMUSG00000030170.15_0	chr6	-	2173	5	FSM	ENSMUSG00000030170.15	ENSMUST00000117171.8	2174	5	-6	7	-6	-4	multi-exon	FALSE	canonical	3	7	junction_4	2.73861278752583	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGGTTTCTCTCCCTCT	NA	False	NA	NA	False	ATTAAA	-10	NA	119426353	119409498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_119410818_119417242_119417536_119423295_119423544_119425096_119425234_119426177
ENSMUSG00000030170.15_1	chr6	-	2333	5	FSM	ENSMUSG00000030170.15	ENSMUST00000119369.2	2339	5	6	0	6	0	multi-exon	FALSE	canonical	0	0	junction_4	5.21416340365355	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTTCTCTCCCTCTCCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	119521273	119409494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_119410818_119417242_119417536_119423295_119423544_119425096_119425234_119520941
ENSMUSG00000030170.15_2	chr6	-	1746	3	ISM	ENSMUSG00000030170.15	ENSMUST00000117171.8	2174	5	2922	3	2922	0	3prime_fragment	FALSE	canonical	3	8	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTTCTCTCCCTCTCCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	119423425	119409494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_119410818_119417242_119417536_119423295
ENSMUSG00000030172.16_0	chr6	-	7543	19	NIC	ENSMUSG00000030172.16	novel	8760	21	NA	NA	-8	776	intron_retention	FALSE	canonical	3	90	junction_15	15.3676146570284	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTAAAGAGCTGTGT	NA	False	NA	-32	True	ATTAAA	-26	NA	119825103	119548814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_119552724_119571745_119571935_119597271_119597371_119607563_119607709_119671531_119671693_119690640_119690773_119699133_119699270_119720248_119720443_119726798_119726940_119728160_119728302_119730219_119730358_119738104_119738273_119750694_119750863_119754948_119755033_119756437_119756594_119760349_119760425_119773867_119774285_119801346_119802171_119824837
ENSMUSG00000030172.16_3	chr6	-	3613	1	ISM	ENSMUSG00000030172.16	ENSMUST00000183703.8	8760	21	273734	8	47689	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTGTGTGCTGCAGCC	NA	False	NA	NA	False	TATAAA	-8	NA	119551377	119547764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_119547800_119551400
ENSMUSG00000030172.16_34	chr6	-	7674	20	NIC	ENSMUSG00000030172.16	novel	8760	21	NA	NA	0	776	intron_retention	TRUE	canonical	0	0	junction_18	36.0633483879812	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTAAAGAGCTGTGT	NA	False	NA	-32	True	ATTAAA	-26	NA	119825095	119548814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_119552724_119571745_119571935_119597271_119597371_119607563_119607709_119671531_119671693_119690640_119690773_119699133_119699270_119720248_119720443_119726798_119726940_119728160_119728302_119730219_119730358_119738104_119738273_119750694_119750863_119754948_119755033_119756437_119756594_119760349_119760425_119773867_119774285_119801346_119802171_119802641_119802781_119824837
ENSMUSG00000030172.16_50	chr6	-	6394	17	ISM	ENSMUSG00000030172.16	ENSMUST00000184864.8	5428	19	50787	-1866	-358	768	3prime_fragment	FALSE	canonical	3	90	junction_15	15.8385408103146	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAGAACTAAAAAATTAAAG	NA	False	NA	-40	True	ATTAAA	-18	NA	119774233	119548822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_119552724_119571745_119571935_119597271_119597371_119607563_119607709_119671531_119671693_119690640_119690773_119699133_119699270_119720248_119720443_119726798_119726940_119728160_119728302_119730219_119730358_119738104_119738273_119750694_119750863_119754948_119755033_119756437_119756594_119760349_119760425_119773867
ENSMUSG00000030177.15_0	chr6	-	2448	11	ISM	ENSMUSG00000030177.15	ENSMUST00000112703.8	1887	12	3417	-706	3285	-6	3prime_fragment	FALSE	canonical	3	197	junction_10	34.6913533895696	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATCTCAGGGCTCTAC	NA	False	NA	-20	True	AATAAA	-12	NA	120331016	120301289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961
ENSMUSG00000030177.15_1	chr6	-	2487	12	FSM	ENSMUSG00000030177.15	ENSMUST00000112703.8	1887	12	106	-706	1	-6	multi-exon	FALSE	canonical	3	197	junction_10	38.004349468349	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATCTCAGGGCTCTAC	NA	False	NA	-20	True	AATAAA	-12	NA	120334327	120301289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
ENSMUSG00000030177.15_10	chr6	-	2502	11	ISM	ENSMUSG00000030177.15	ENSMUST00000032283.12	2610	12	3374	6	3285	-6	3prime_fragment	FALSE	canonical	3	123	junction_10	52.2858489459624	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATCTCAGGGCTCTAC	NA	False	NA	-20	True	AATAAA	-12	NA	120331016	120301289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961
ENSMUSG00000030177.15_7	chr6	-	2541	12	FSM	ENSMUSG00000030177.15	ENSMUST00000032283.12	2610	12	63	6	1	-6	multi-exon	FALSE	canonical	3	123	junction_10	52.5397920824409	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATCTCAGGGCTCTAC	NA	False	NA	-20	True	AATAAA	-12	NA	120334327	120301289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120334287
ENSMUSG00000030180.16_1	chr6	+	8128	28	FSM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	2	2814	2	2049	multi-exon	FALSE	canonical	3	38	junction_13	7.14421307921747	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCGGCTCTTCTGTACTTA	NA	False	NA	8	True	AATATA	-16	NA	120341086	120418721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495_120358631_120359877_120359984_120362582_120362675_120364970_120365130_120365890_120366011_120366513_120366673_120367614_120367797_120371047_120371211_120375898_120376019_120379466_120379662_120381925_120382108_120382820_120382946_120383535_120383687_120385205_120385321_120389115_120389472_120392176_120392316_120395519_120395700_120396360_120396523_120403774_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773_120409185_120415947
ENSMUSG00000030180.16_2	chr6	+	8193	29	NIC	ENSMUSG00000030180.16	novel	10944	28	NA	NA	7	2045	combination_of_known_junctions	FALSE	canonical	3	31	junction_28	8.37878759920867	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTCGGCTCTTCTGTA	NA	False	NA	4	True	AATATA	-12	NA	120341099	120418717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495_120358631_120359877_120359984_120362582_120362675_120364970_120365130_120365890_120366011_120366513_120366673_120367614_120367797_120371047_120371211_120375898_120376019_120379466_120379662_120381925_120382108_120382820_120382946_120383535_120383687_120385205_120385321_120389115_120389472_120392176_120392316_120395519_120395700_120396360_120396523_120403774_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773_120409185_120415404_120415487_120415947
ENSMUSG00000030180.16_20	chr6	+	4978	10	ISM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	48148	2818	6469	2045	3prime_fragment	FALSE	canonical	3	43	junction_9	6.37316906653333	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTCGGCTCTTCTGTA	7192	False	NA	4	True	AATATA	-12	NA	120389232	120418717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_120389472_120392176_120392316_120395519_120395700_120396360_120396523_120403774_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773_120409185_120415947
ENSMUSG00000030180.16_21	chr6	+	4984	11	NIC	ENSMUSG00000030180.16	novel	10944	28	NA	NA	6545	2045	combination_of_known_junctions	FALSE	canonical	3	31	junction_10	9.69329665284211	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTCGGCTCTTCTGTA	7268	False	NA	4	True	AATATA	-12	NA	120389308	120418717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120389472_120392176_120392316_120395519_120395700_120396360_120396523_120403774_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773_120409185_120415404_120415487_120415947
ENSMUSG00000030180.16_26	chr6	+	4221	7	NIC	ENSMUSG00000030180.16	novel	10944	28	NA	NA	-303	2048	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	11.4309521329882	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCGGCTCTTCTGTACTT	9263	False	NA	7	True	AATATA	-15	NA	120403896	120418720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773_120409185_120415404_120415487_120415947
ENSMUSG00000030180.16_27	chr6	+	4458	6	ISM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	62971	2337	-144	-2337	3prime_fragment	FALSE	canonical	3	43	junction_5	7.46726188103779	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTCTTTCTGACTCCTC	9422	False	NA	-5	True	ATTAAA	-10	NA	120404055	120419198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773_120409185_120415947
ENSMUSG00000030180.16_31	chr6	+	3694	3	ISM	ENSMUSG00000030180.16	ENSMUST00000142791.2	1295	4	1666	-2533	1666	-2330	3prime_fragment	FALSE	canonical	3	31	junction_2	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGACTCCTCAAAGTTG	3608	False	NA	2	True	ATTAAA	-17	NA	120408830	120419205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_120409185_120415404_120415487_120415947
ENSMUSG00000030180.16_32	chr6	+	3009	2	ISM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	67861	2818	1781	2045	3prime_fragment	FALSE	canonical	3	43	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTCGGCTCTTCTGTA	3723	False	NA	4	True	AATATA	-12	NA	120408945	120418717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_120409185_120415947
ENSMUSG00000030180.16_33	chr6	+	2298	1	ISM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	75821	2332	9741	-2332	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCTGACTCCTCAAAGT	NA	False	NA	0	True	ATTAAA	-15	NA	120416905	120419203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_120416900_120419200
ENSMUSG00000030180.16_50	chr6	+	3331	3	ISM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	66007	2818	-73	2045	3prime_fragment	FALSE	canonical	3	43	junction_2	11	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTCGGCTCTTCTGTA	1869	False	NA	4	True	AATATA	-12	NA	120407091	120418717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_120407242_120408773_120409185_120415947
ENSMUSG00000030188.13_0	chr6	-	606	5	FSM	ENSMUSG00000030188.13	ENSMUST00000032307.12	767	5	28	133	28	2	multi-exon	FALSE	canonical	2	356	junction_3	64.3059095262636	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAACCCAGGTTACAT	NA	False	NA	NA	False	TATAAA	-11	NA	131270179	131261483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131270034
ENSMUSG00000030188.13_5	chr6	-	790	6	FSM	ENSMUSG00000030188.13	ENSMUST00000173198.8	561	6	-48	-181	45	3	multi-exon	FALSE	canonical	2	2	junction_5	222.978563992147	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACCCAGGTTACATG	NA	False	NA	NA	False	TATAAA	-12	NA	131270162	131261482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131268703_131268904_131270034
ENSMUSG00000030189.16_1	chr6	-	1854	10	FSM	ENSMUSG00000030189.16	ENSMUST00000032309.13	1853	10	-9	8	-9	-8	multi-exon	FALSE	canonical	3	2076	junction_5	391.631661162235	2805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAAGGCTGTGTAACT	4962	False	NA	-17	True	AATAAA	-13	NA	131365410	131341825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131352936_131353144_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361530_131364980
ENSMUSG00000030189.16_2	chr6	-	1648	9	FSM	ENSMUSG00000030189.16	ENSMUST00000087865.4	1684	9	28	8	-10	-8	multi-exon	FALSE	canonical	3	624	junction_4	774.912807595151	680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAAGGCTGTGTAACT	4961	False	NA	-17	True	AATAAA	-13	NA	131365411	131341825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361530_131364980
ENSMUSG00000030199.17_0	chr6	+	5544	9	FSM	ENSMUSG00000030199.17	ENSMUST00000111963.8	5707	9	148	15	-121	-12	multi-exon	FALSE	canonical	3	28	junction_2	19.2418814048939	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAAAAAAATCAAG	NA	False	NA	NA	False	AATAAA	-7	NA	134012810	134247106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_134013102_134043269_134043429_134114247_134114381_134199827_134199993_134210481_134210617_134225236_134225768_134238652_134238796_134239981_134240083_134243220
ENSMUSG00000030199.17_1	chr6	+	5377	8	FSM	ENSMUSG00000030199.17	ENSMUST00000081028.13	5545	8	156	12	-113	-12	multi-exon	FALSE	canonical	3	29	junction_1	18.3358687176979	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAAAAAAATCAAG	NA	False	NA	NA	False	AATAAA	-7	NA	134012818	134247106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_134013102_134114247_134114381_134199827_134199993_134210481_134210617_134225236_134225768_134238652_134238796_134239981_134240083_134243220
ENSMUSG00000030199.17_15	chr6	+	4439	4	ISM	ENSMUSG00000030199.17	ENSMUST00000081028.13	5545	8	212798	10	933	-10	3prime_fragment	FALSE	canonical	3	58	junction_1	9.10433352249844	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATCAAGTC	2523	False	NA	NA	False	AATAAA	-9	NA	134225460	134247108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_134225768_134238652_134238796_134239981_134240083_134243220
ENSMUSG00000030199.17_18	chr6	+	2755	1	ISM	ENSMUSG00000030199.17	ENSMUST00000081028.13	5545	8	231691	10	19826	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATCAAGTC	NA	False	NA	NA	False	AATAAA	-9	NA	134244353	134247108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_134244400_134247100
ENSMUSG00000030199.17_4	chr6	+	5554	9	NIC	ENSMUSG00000030199.17	novel	5707	9	NA	NA	134	-13	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	26.8048503073604	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TATAAAAAAAAAAAAATCAA	NA	False	NA	NA	False	AATAAA	-6	NA	134012796	134247105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_134013102_134043269_134043429_134114250_134114381_134199827_134199993_134210481_134210617_134225236_134225768_134238652_134238796_134239981_134240083_134243220
ENSMUSG00000030200.14_0	chr6	+	1672	6	FSM	ENSMUSG00000030200.14	ENSMUST00000111960.2	1578	6	34	-128	-3	128	multi-exon	FALSE	canonical	3	57	junction_3	10	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTAGCTAGCTTAAGTC	NA	False	NA	NA	False	NA	NA	NA	134391424	134415206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_134391599_134400573_134401026_134404258_134404424_134407028_134407100_134409108_134409376_134414663
ENSMUSG00000030201.16_0	chr6	-	3009	1	ISM	ENSMUSG00000030201.16	ENSMUST00000032322.15	9368	23	117417	12	15512	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATGAAAATGACTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	134426459	134423450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_134423400_134426500
ENSMUSG00000030201.16_19	chr6	-	6942	14	ISM	ENSMUSG00000030201.16	ENSMUST00000032322.15	9368	23	82616	15	-13004	-15	3prime_fragment	FALSE	canonical	3	65	junction_12	11.5855449621934	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGAAAAAATGAAAATGACT	9910	False	NA	NA	False	AATAAA	-17	NA	134461260	134423453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_134428044_134430512_134430611_134431659_134431797_134433017_134433249_134434620_134434732_134436194_134436432_134439498_134439625_134441357_134441568_134444471_134444663_134445605_134445818_134447651_134447855_134456471_134456799_134457338_134457524_134461176
ENSMUSG00000030201.16_2	chr6	-	9399	23	FSM	ENSMUSG00000030201.16	ENSMUST00000032322.15	9368	23	-48	17	4	-17	multi-exon	FALSE	canonical	3	65	junction_12	12.4923116851794	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTGGAAAAAATGAAAATGA	NA	False	NA	NA	False	AATAAA	-15	NA	134543924	134423455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_134428044_134430512_134430611_134431659_134431797_134433017_134433249_134434620_134434732_134436194_134436432_134439498_134439625_134441357_134441568_134444471_134444663_134445605_134445818_134447651_134447855_134456471_134456799_134457338_134457524_134461176_134461404_134462606_134462897_134463417_134463635_134483158_134483331_134484248_134484646_134488118_134488251_134490185_134490383_134497358_134497557_134518614_134519009_134543605
ENSMUSG00000030201.16_30	chr6	-	1580	2	ISM	ENSMUSG00000030201.16	ENSMUST00000032322.15	9368	23	-51	94312	1	-14	5prime_fragment	FALSE	canonical	3	105	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATATAAAAACAGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	134543927	134517750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_134519009_134543605
ENSMUSG00000030201.16_8	chr6	-	5669	8	ISM	ENSMUSG00000030201.16	ENSMUST00000111950.4	2756	11	6760	-3992	475	-15	3prime_fragment	FALSE	canonical	3	81	junction_7	9.48683298050514	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGAAAAAATGAAAATGACT	NA	False	NA	NA	False	AATAAA	-17	NA	134441496	134423453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_134428044_134430512_134430611_134431659_134431797_134433017_134433249_134434620_134434732_134436194_134436432_134439498_134439625_134441357
ENSMUSG00000030203.18_0	chr6	-	5140	7	FSM	ENSMUSG00000030203.18	ENSMUST00000100857.10	5104	7	-43	7	-43	-7	multi-exon	FALSE	canonical	3	50	junction_6	14.7309198626562	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGTACGTAAGTGTGAGA	NA	False	NA	-10	True	AATAAA	-17	NA	134769631	134692442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_134696015_134697456_134697581_134702798_134702959_134716774_134716939_134735581_134735721_134737808_134738398_134769239
ENSMUSG00000030203.18_1	chr6	-	2570	1	ISM	ENSMUSG00000030203.18	ENSMUST00000129433.4	3993	7	74426	12	8009	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGTACGTAAGTGTGAGA	NA	False	NA	-10	True	AATAAA	-17	NA	134695012	134692442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_134692400_134695000
ENSMUSG00000030203.18_5	chr6	-	4536	6	ISM	ENSMUSG00000030203.18	ENSMUST00000100857.10	5104	7	31408	2	-117	-2	3prime_fragment	FALSE	canonical	3	61	junction_1	12.0099958368019	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGTAAGTGTGAGACGTGG	NA	False	NA	-5	True	AATAAA	-22	NA	134738180	134692437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_134696015_134697456_134697581_134702798_134702959_134716774_134716939_134735581_134735721_134737808
ENSMUSG00000030204.11_0	chr6	+	1739	12	FSM	ENSMUSG00000030204.11	ENSMUST00000032326.11	1764	12	19	6	-1	-2	multi-exon	TRUE	canonical	3	485	junction_5	30.2182146373304	564	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGTGTGTGTCTGTGTG	6593	False	NA	14	True	ATTAAA	-14	NA	134988593	135000733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134997650_134998411_134998542_135000241
ENSMUSG00000030207.16_0	chr6	+	4114	14	NNC	ENSMUSG00000030207.16	novel	4221	13	NA	NA	-62	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	22.6765264551475	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACACGTGTGTCCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	135175044	135213234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_135175100_135186030_135186430_135188832_135188932_135193883_135194076_135195676_135195808_135202137_135202286_135202653_135202796_135203847_135203992_135204150_135204233_135205410_135205567_135208618_135208737_135210253_135210475_135210976_135212675_135212705
ENSMUSG00000030207.16_1	chr6	+	4145	13	FSM	ENSMUSG00000030207.16	ENSMUST00000111915.8	4221	13	70	6	-62	-2	multi-exon	FALSE	canonical	3	64	junction_6	10.7558123821495	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACACGTGTGTCCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	135175044	135213234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_135175100_135186030_135186430_135188832_135188932_135193883_135194076_135195676_135195808_135202137_135202286_135202653_135202796_135203847_135203992_135204150_135204233_135205410_135205567_135208618_135208737_135210253_135210475_135210976
ENSMUSG00000030207.16_2	chr6	+	4175	13	NNC	ENSMUSG00000030207.16	novel	4221	13	NA	NA	-62	-2	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	20.9165006633519	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACACGTGTGTCCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	135175044	135213234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_135175100_135186030_135186430_135188802_135188932_135193883_135194076_135195676_135195808_135202137_135202286_135202653_135202796_135203847_135203992_135204150_135204233_135205410_135205567_135208618_135208737_135210253_135210475_135210976
ENSMUSG00000030208.16_1	chr6	+	2638	5	FSM	ENSMUSG00000030208.16	ENSMUST00000032330.16	2721	5	82	1	5	-1	multi-exon	FALSE	canonical	3	40	junction_2	1.6393596310755	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGTGTGACTGTTTTCT	NA	False	NA	6	True	TATAAA	-19	NA	135340010	135360170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_135340101_135354175_135354287_135356898_135356996_135357098_135357240_135357971
ENSMUSG00000030208.16_2	chr6	+	1899	1	ISM	ENSMUSG00000030208.16	ENSMUST00000205156.3	2911	6	18729	1	13781	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGTGTGACTGTTTTCT	NA	False	NA	6	True	TATAAA	-19	NA	135358271	135360170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_135358300_135360200
ENSMUSG00000030213.13_1	chr6	+	7933	16	NNC	ENSMUSG00000030213.13	novel	8059	15	NA	NA	-1	-19	at_least_one_novel_splicesite	FALSE	non_canonical	3	38	junction_15	48.9936957395768	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTCTGAGTACCCTGAC	7091	False	NA	14	True	AATAAA	-14	NA	136495842	136587841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_136495962_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471_136584359_136584422
ENSMUSG00000030213.13_2	chr6	+	4220	15	FSM	ENSMUSG00000030213.13	ENSMUST00000032335.13	8059	15	43	3796	-1	-1253	multi-exon	FALSE	canonical	3	154	junction_2	25.3043716477963	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTTCCCTGAACAATTC	7091	False	NA	8	True	AATAAA	-16	NA	136495842	136584064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_136495962_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471
ENSMUSG00000030213.13_42	chr6	+	4216	15	NIC	ENSMUSG00000030213.13	novel	3018	9	NA	NA	24	-1241	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	51.1530815797254	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATTCAAACTTCGGGGT	8874	False	NA	20	True	AATAAA	-28	NA	136509948	136584076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_136510052_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471
ENSMUSG00000030213.13_5	chr6	+	4229	15	NIC	ENSMUSG00000030213.13	novel	8059	15	NA	NA	-1	-1253	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	55.9380123394619	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTTCCCTGAACAATTC	7091	False	NA	8	True	AATAAA	-16	NA	136495842	136584064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_136495962_136536761_136538438_136540757_136540845_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471
ENSMUSG00000030213.13_59	chr6	+	3671	14	ISM	ENSMUSG00000030213.13	ENSMUST00000032335.13	8059	15	41387	3801	-654	-1258	3prime_fragment	FALSE	canonical	3	154	junction_1	24.8769754054918	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAAGCCTTCCCTGAAC	4154	False	NA	3	True	AATAAA	-11	NA	136537186	136584059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471
ENSMUSG00000030213.13_95	chr6	+	2433	1	ISM	ENSMUSG00000030213.13	ENSMUST00000032335.13	8059	15	89609	19	12825	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTCTGAGTACCCTGAC	9074	False	NA	14	True	AATAAA	-14	NA	136585408	136587841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_136585400_136587800
ENSMUSG00000030214.8_0	chr6	-	1954	11	FSM	ENSMUSG00000030214.8	ENSMUST00000032336.7	2010	11	49	7	-6	-7	multi-exon	FALSE	canonical	3	53	junction_2	4.98497743224581	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCCATCTGTGGTCCTGC	NA	False	NA	-7	True	AATAAA	-10	NA	136638877	136589074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_136589347_136589734_136589842_136590789_136590976_136593924_136594066_136594199_136594401_136611428_136611574_136612489_136612631_136617114_136617254_136618128_136618213_136628728_136628949_136638559
ENSMUSG00000030216.13_1	chr6	-	2650	12	FSM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	83	6	-7	-6	multi-exon	FALSE	canonical	3	1089	junction_11	207.479880534104	2092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATACCTTCTGTGTTTGT	2915	False	NA	-7	True	AATAAA	-13	NA	136805148	136790657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
ENSMUSG00000030216.13_5	chr6	-	2648	12	NNC	ENSMUSG00000030216.13	novel	2739	12	NA	NA	-7	-6	at_least_one_novel_splicesite	FALSE	canonical	3	247	junction_11	431.640078103034	539	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATACCTTCTGTGTTTGT	2915	False	NA	-7	True	AATAAA	-13	NA	136805148	136790657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805019
ENSMUSG00000030216.13_6	chr6	-	2646	12	NNC	ENSMUSG00000030216.13	novel	2739	12	NA	NA	-7	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	500.56957640916	199	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATACCTTCTGTGTTTGT	2915	False	NA	-7	True	AATAAA	-13	NA	136805148	136790657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803104_136805017
ENSMUSG00000030220.14_1	chr6	-	1083	6	FSM	ENSMUSG00000030220.14	ENSMUST00000032344.12	1193	6	52	58	52	-58	multi-exon	FALSE	canonical	3	8	junction_3	3.18747549010185	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGAACCTCATTTGCTT	5623	False	NA	NA	False	AATAAA	-16	NA	136918702	136900710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918648
ENSMUSG00000030222.14_0	chr6	-	2246	5	FSM	ENSMUSG00000030222.14	ENSMUST00000117919.8	2262	5	16	0	-8	0	multi-exon	FALSE	canonical	3	37	junction_2	7.44983221287567	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTGTTGGAATTCTTT	NA	False	NA	-12	True	AATAAA	-14	NA	137146714	137031828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_137033539_137034810_137034885_137043996_137044054_137141932_137142101_137146477
ENSMUSG00000030222.14_3	chr6	-	1379	1	ISM	ENSMUSG00000030222.14	ENSMUST00000032347.11	2075	5	114287	7	83853	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTCTGTTGGAATTCTT	NA	False	NA	-13	True	AATAAA	-13	NA	137033208	137031829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_137031800_137033200
ENSMUSG00000030222.14_5	chr6	-	1904	4	ISM	ENSMUSG00000030222.14	ENSMUST00000117919.8	2262	5	4741	-6	4694	0	3prime_fragment	FALSE	canonical	3	37	junction_2	6.16441400296898	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAATTCTTTTGTGAA	NA	False	NA	-6	True	AATAAA	-20	NA	137141989	137031822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_137033539_137034810_137034885_137043996_137044054_137141932
ENSMUSG00000030224.11_1	chr6	+	1754	10	FSM	ENSMUSG00000030224.11	ENSMUST00000064910.7	2650	10	53	843	53	413	multi-exon	FALSE	canonical	3	757	junction_9	58.2073772423402	860	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATAATTTTTCTCTT	NA	False	NA	82	True	AATAAA	-9	NA	137712128	137728087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_137712465_137713327_137713464_137716355_137716438_137716752_137716826_137718300_137718398_137718949_137719088_137722504_137722642_137725684_137725835_137726361_137726428_137727548
ENSMUSG00000030225.12_0	chr6	+	1719	9	FSM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	6	4	6	-4	multi-exon	FALSE	canonical	3	541	junction_6	37.3511629671688	600	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTTATTTTGTTTAT	NA	False	NA	16	True	AATACA	-16	NA	137731561	137814888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813882_137814113
ENSMUSG00000030231.12_0	chr6	+	4199	25	NIC	ENSMUSG00000030231.12	novel	7382	31	NA	NA	-12	-3	combination_of_known_junctions	FALSE	canonical	3	34	junction_24	15.4811152878452	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCACTGGTGTTAGAATC	NA	False	NA	14	True	AATAAA	-14	NA	140369767	140542833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_140369983_140370102_140370183_140372223_140372282_140470590_140470675_140471564_140471686_140472182_140472288_140474286_140474360_140480187_140480289_140482373_140482490_140489445_140489914_140496486_140496950_140498440_140498525_140515078_140515142_140515831_140515913_140516046_140516197_140518590_140518693_140522952_140523065_140525155_140525203_140527693_140527815_140529558_140529675_140532034_140532227_140534900_140535042_140535371_140535482_140537353_140537491_140541974
ENSMUSG00000030231.12_2	chr6	+	4396	26	NIC	ENSMUSG00000030231.12	novel	7382	31	NA	NA	-106	-3	combination_of_known_junctions	FALSE	canonical	3	61	junction_24	11.9895954894233	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCACTGGTGTTAGAATC	NA	False	NA	14	True	AATAAA	-14	NA	140369673	140542833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_140369983_140370102_140370183_140372223_140372282_140470590_140470675_140471564_140471686_140472182_140472288_140474286_140474360_140480187_140480289_140482373_140482490_140489445_140489914_140496486_140496950_140498440_140498525_140515078_140515142_140515831_140515913_140516046_140516197_140518590_140518693_140522952_140523065_140525155_140525203_140527693_140527815_140529558_140529675_140532034_140532227_140534900_140535042_140535371_140535482_140537353_140537491_140539280_140539384_140541974
ENSMUSG00000030231.12_5	chr6	+	4399	26	NIC	ENSMUSG00000030231.12	novel	7382	31	NA	NA	-107	-4	combination_of_known_junctions	FALSE	canonical	3	8	junction_17	19.6910538062339	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCACTGGTGTTAGAAT	NA	False	NA	13	True	AATAAA	-13	NA	140369672	140542832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_140369983_140370102_140370183_140372223_140372282_140470590_140470675_140471564_140471686_140472182_140472288_140474286_140474360_140480187_140480289_140482373_140482490_140489445_140489914_140496486_140496950_140498440_140498525_140515078_140515142_140515831_140515913_140516046_140516197_140518590_140518693_140522952_140523065_140525152_140525203_140527693_140527815_140529558_140529675_140532034_140532227_140534900_140535042_140535371_140535482_140537353_140537491_140539280_140539384_140541974
ENSMUSG00000030231.12_7	chr6	+	4584	27	NIC	ENSMUSG00000030231.12	novel	7382	31	NA	NA	-107	-5	combination_of_known_junctions	FALSE	canonical	2	6	junction_19	24.6783149904776	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATCACTGGTGTTAGAA	NA	False	NA	12	True	AATAAA	-12	NA	140369672	140542831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_140369983_140370102_140370183_140372223_140372282_140470590_140470675_140471564_140471686_140472182_140472288_140474286_140474360_140480187_140480289_140482373_140482490_140489445_140489914_140496486_140496950_140498440_140498525_140515078_140515142_140515831_140515913_140516046_140516197_140518590_140518693_140522952_140523065_140525155_140525203_140526072_140526262_140527693_140527815_140529558_140529675_140532034_140532227_140534900_140535042_140535371_140535482_140537353_140537491_140539280_140539384_140541974
ENSMUSG00000030231.12_8	chr6	+	4299	25	NIC	ENSMUSG00000030231.12	novel	7382	31	NA	NA	-112	-4	combination_of_known_splicesites	FALSE	canonical	1	2	junction_15	20.8844373211782	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCACTGGTGTTAGAAT	NA	False	NA	13	True	AATAAA	-13	NA	140369667	140542832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_140369983_140370102_140370183_140372223_140372282_140470590_140470675_140471564_140471686_140472182_140472288_140474286_140474360_140480187_140480289_140482373_140482490_140489445_140489914_140496486_140496950_140498440_140498525_140515078_140515142_140515831_140515913_140516046_140516197_140522952_140523065_140525155_140525203_140527693_140527815_140529558_140529675_140532034_140532227_140534900_140535042_140535371_140535482_140537353_140537491_140539280_140539384_140541974
ENSMUSG00000030232.19_1	chr6	+	3276	8	FSM	ENSMUSG00000030232.19	ENSMUST00000032359.15	5932	8	-4	2660	-4	-5	multi-exon	FALSE	canonical	3	55	junction_1	98.0522559554811	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAGCTTCAAATTGTAAC	NA	False	NA	NA	False	AATAAA	-15	NA	140568384	140598547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_140568785_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481
ENSMUSG00000030232.19_40	chr6	+	2981	1	ISM	ENSMUSG00000030232.19	ENSMUST00000032359.15	5932	8	29056	782	4902	281	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCTATTATTTCCTTTA	5791	False	NA	NA	False	AATAAA	-17	NA	140597444	140600425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_140597400_140600400
ENSMUSG00000030232.19_5	chr6	+	3666	8	FSM	ENSMUSG00000030232.19	ENSMUST00000087614.11	3727	8	56	5	56	-5	multi-exon	FALSE	canonical	3	238	junction_4	41.8398306470214	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAGCTTCAAATTGTAAC	NA	False	NA	NA	False	AATAAA	-15	NA	140569280	140598547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_140570071_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481
ENSMUSG00000030232.19_6	chr6	+	3137	9	NIC	ENSMUSG00000030232.19	novel	2575	9	NA	NA	55	-2	combination_of_known_junctions	FALSE	canonical	3	123	junction_8	72.0736385580747	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCTTCAAATTGTAACAAT	NA	False	NA	NA	False	AATAAA	-18	NA	140569279	140598550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_140570071_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481_140596509_140597041
ENSMUSG00000030232.19_9	chr6	+	3367	9	NIC	ENSMUSG00000030232.19	novel	2575	9	NA	NA	31	-9	combination_of_known_junctions	FALSE	canonical	3	19	junction_8	102.668687412473	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATTTATATTCTGATGA	NA	False	NA	-1	True	NA	NA	NA	140569255	140601198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_140570071_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481_140596509_140599483
ENSMUSG00000030243.17_0	chr6	-	2836	16	FSM	ENSMUSG00000030243.17	ENSMUST00000032370.13	2112	16	-23	-701	15	701	multi-exon	TRUE	canonical	2	2	junction_1	39.7130820875047	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAATACTCACTGTGAT	6208	False	NA	NA	False	NA	NA	NA	142332785	142295366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_142296272_142308531_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
ENSMUSG00000030243.17_12	chr6	-	3104	15	NIC	ENSMUSG00000030243.17	novel	2112	16	NA	NA	0	208	intron_retention	FALSE	canonical	2	3	junction_14	40.4629460123704	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTTCCTCTAAGTCCG	6231	False	NA	-15	True	ATTAAA	-6	NA	142332762	142307638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332444
ENSMUSG00000030243.17_15	chr6	-	4129	13	NIC	ENSMUSG00000030243.17	novel	3389	15	NA	NA	2	-27	intron_retention	FALSE	canonical	3	113	junction_12	19.6468827043885	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATTTTCTTTATTTCTT	6195	False	NA	-26	True	ATTAAA	-13	NA	142332798	142307873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
ENSMUSG00000030243.17_18	chr6	-	2553	14	ISM	ENSMUSG00000030243.17	ENSMUST00000111803.9	3389	15	2509	772	2396	-27	3prime_fragment	FALSE	canonical	3	123	junction_2	17.5735142292845	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATTTTCTTTATTTCTT	8689	False	NA	-26	True	ATTAAA	-13	NA	142330304	142307873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254
ENSMUSG00000030243.17_5	chr6	-	2590	15	FSM	ENSMUSG00000030243.17	ENSMUST00000111803.9	3389	15	27	772	14	-27	multi-exon	FALSE	canonical	3	113	junction_14	18.9118524546197	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATTTTCTTTATTTCTT	6207	False	NA	-26	True	ATTAAA	-13	NA	142332786	142307873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
ENSMUSG00000030243.17_7	chr6	-	2699	14	NIC	ENSMUSG00000030243.17	novel	3389	15	NA	NA	4	120	intron_retention	FALSE	canonical	2	13	junction_13	39.2829215944293	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAAAATAATCCTCTATG	6197	False	NA	-103	True	NA	NA	NA	142332796	142307726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142332747
ENSMUSG00000030243.17_9	chr6	-	3370	15	NIC	ENSMUSG00000030243.17	novel	3389	15	NA	NA	-5	-133	intron_retention	FALSE	canonical	3	14	junction_14	37.9085903785645	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTATGTGGATGAAGT	6226	False	NA	NA	False	CATAAA	-7	NA	142332767	142307234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332587
ENSMUSG00000030245.11_0	chr6	+	2528	3	FSM	ENSMUSG00000030245.11	ENSMUST00000146508.2	367	3	-18	-2143	14	-5	multi-exon	FALSE	canonical	3	32	junction_1	306	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGTGGTGGTCAAGTTT	NA	False	NA	20	True	AATAAA	-14	NA	142332960	142349579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_142333096_142341913_142341996_142347268
ENSMUSG00000030245.11_1	chr6	+	2799	5	FSM	ENSMUSG00000030245.11	ENSMUST00000032372.7	2818	5	14	5	14	-5	multi-exon	FALSE	canonical	3	520	junction_3	45.9911676303179	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGTGGTGGTCAAGTTT	NA	False	NA	20	True	AATAAA	-14	NA	142332960	142349579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268
ENSMUSG00000030245.11_15	chr6	+	1572	1	ISM	ENSMUSG00000030245.11	ENSMUST00000032372.7	2818	5	15063	3	15031	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGGTGGTCAAGTTTAT	2303	False	NA	22	True	AATAAA	-16	NA	142348009	142349581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_142348000_142349600
ENSMUSG00000030246.13_0	chr6	-	1276	8	FSM	ENSMUSG00000030246.13	ENSMUST00000239397.2	1287	8	11	0	11	0	multi-exon	FALSE	canonical	3	685	junction_1	65.6636450839754	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTCTGCCTGCCTTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	142453658	142435977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_142436331_142438218_142438343_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
ENSMUSG00000030246.13_1	chr6	-	2765	7	NIC	ENSMUSG00000030246.13	novel	1304	8	NA	NA	7	-1	intron_retention	FALSE	canonical	3	685	junction_1	70.5275753793429	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTGCCTGCCTTTTTCT	NA	False	NA	-5	True	AATAAA	-18	NA	142453662	142435975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_142436331_142438218_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
ENSMUSG00000030254.17_1	chr6	-	2552	13	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	-8	37	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	58.64790182853	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTGCATTTGTCATAAAA	NA	False	NA	-42	True	AATAGA	-15	NA	112673617	112596868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ENSMUSG00000030254.17_15	chr6	-	2631	14	FSM	ENSMUSG00000030254.17	ENSMUST00000068487.12	2577	14	13	-67	-9	37	multi-exon	FALSE	canonical	3	29	junction_4	88.4665550417034	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTGCATTTGTCATAAAA	NA	False	NA	-42	True	AATAGA	-15	NA	112673618	112596868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112641056_112641135_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ENSMUSG00000030254.17_18	chr6	-	3590	12	NIC	ENSMUSG00000030254.17	novel	3535	12	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	172	junction_1	27.9506649191301	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGTTTATTTGTTGTTGT	NA	False	NA	-8	True	AATAAA	-16	NA	112673609	112603379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ENSMUSG00000030254.17_2	chr6	-	2481	12	FSM	ENSMUSG00000030254.17	ENSMUST00000077088.11	2577	12	38	58	0	37	multi-exon	FALSE	canonical	3	81	junction_1	49.718048005937	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTGCATTTGTCATAAAA	NA	False	NA	-42	True	AATAGA	-15	NA	112673609	112596868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_112597866_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ENSMUSG00000030254.17_22	chr6	-	3678	13	ISM	ENSMUSG00000030254.17	ENSMUST00000068487.12	2577	14	13	6443	-9	-3	5prime_fragment	FALSE	canonical	3	29	junction_3	81.0826053410279	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTTATTTGTTGTTGTT	NA	False	NA	-7	True	AATAAA	-17	NA	112673618	112603378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_112605486_112621548_112621709_112626555_112626799_112641056_112641135_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ENSMUSG00000030256.12_1	chr6	-	1905	4	NIC	ENSMUSG00000030256.12	novel	6133	5	NA	NA	17	915	intron_retention	FALSE	canonical	2	4	junction_1	4.08248290463863	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTACCTTTAGTTCTC	NA	False	NA	NA	False	GATAAA	-18	NA	145811011	145808315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_145809969_145810301_145810410_145810722_145810787_145810931
ENSMUSG00000030257.17_0	chr6	-	4452	22	FSM	ENSMUSG00000030257.17	ENSMUST00000088373.11	8887	22	2	4433	2	-4430	multi-exon	FALSE	canonical	3	12	junction_1	6.19450418404635	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTACGTATGTGTCT	6455	False	NA	NA	False	NA	NA	NA	112924225	112699364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_112700163_112704173_112704502_112706609_112706760_112708289_112708471_112712794_112712875_112715843_112716072_112716279_112716386_112718321_112718457_112723852_112723931_112726322_112726384_112731531_112731635_112736709_112736738_112743828_112743914_112748327_112748526_112750558_112750661_112752459_112752682_112753980_112754110_112757833_112758020_112772733_112772797_112793551_112793715_112806399_112806593_112923390
ENSMUSG00000030257.17_13	chr6	-	3875	21	ISM	ENSMUSG00000030257.17	ENSMUST00000088373.11	8887	22	109	8914	109	-8911	5prime_fragment	FALSE	canonical	3	12	junction_1	5.74695571585513	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTATTGATTTAGTGATG	6562	False	NA	NA	False	NA	NA	NA	112924118	112703845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_112704502_112706609_112706760_112708289_112708471_112712794_112712875_112715843_112716072_112716279_112716386_112718321_112718457_112723852_112723931_112726322_112726384_112731531_112731635_112736709_112736738_112743828_112743914_112748327_112748526_112750558_112750661_112752459_112752682_112753980_112754110_112757833_112758020_112772733_112772797_112793551_112793715_112806399_112806593_112923390
ENSMUSG00000030257.17_14	chr6	-	3374	20	ISM	ENSMUSG00000030257.17	ENSMUST00000088373.11	8887	22	-7	11639	-7	9415	5prime_fragment	FALSE	canonical	3	14	junction_14	5.12989176042577	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACCCATTTGCTTGTTTG	6446	False	NA	NA	False	NA	NA	NA	112924234	112706570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_112706760_112708289_112708471_112712794_112712875_112715843_112716072_112716279_112716386_112718321_112718457_112723852_112723931_112726322_112726384_112731531_112731635_112736709_112736738_112743828_112743914_112748327_112748526_112750558_112750661_112752459_112752682_112753980_112754110_112757833_112758020_112772733_112772797_112793551_112793715_112806399_112806593_112923390
ENSMUSG00000030257.17_2	chr6	-	3775	1	ISM	ENSMUSG00000030257.17	ENSMUST00000088373.11	8887	22	225516	5	45187	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACATAGTCTGTGGTTG	NA	False	NA	-8	True	AATAAA	-17	NA	112698711	112694936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_112694900_112698700
ENSMUSG00000030257.17_4	chr6	-	6879	14	ISM	ENSMUSG00000030257.17	ENSMUST00000088373.11	8887	22	175810	5	-4519	-2	3prime_fragment	TRUE	canonical	3	12	junction_1	6.51443549530466	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACATAGTCTGTGGTTG	9977	False	NA	-8	True	AATAAA	-17	NA	112748417	112694936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_112700163_112704173_112704502_112706609_112706760_112708289_112708471_112712794_112712875_112715843_112716072_112716279_112716386_112718321_112718457_112723852_112723931_112726322_112726384_112731531_112731635_112736709_112736738_112743828_112743914_112748327
ENSMUSG00000030257.17_7	chr6	-	4121	21	NIC	ENSMUSG00000030257.17	novel	8887	22	NA	NA	7	-4428	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	7.39509972887452	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTACGTATGTGTCTGT	6460	False	NA	NA	False	NA	NA	NA	112924220	112699362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_112700163_112706609_112706760_112708289_112708471_112712794_112712875_112715843_112716072_112716279_112716386_112718321_112718457_112723852_112723931_112726322_112726384_112731531_112731635_112736709_112736738_112743828_112743914_112748327_112748526_112750558_112750661_112752459_112752682_112753980_112754110_112757833_112758020_112772733_112772797_112793551_112793715_112806399_112806593_112923390
ENSMUSG00000030259.13_0	chr6	+	5431	5	FSM	ENSMUSG00000030259.13	ENSMUST00000111704.8	5446	5	10	5	10	0	multi-exon	FALSE	canonical	2	4	junction_4	5.44862367942584	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATACAATTGTTGCTTG	NA	False	NA	NA	False	AATAAA	-18	NA	145692483	145766800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_145692693_145754109_145754289_145760778_145761669_145762223_145762369_145762792
ENSMUSG00000030259.13_1	chr6	+	5632	6	NNC	ENSMUSG00000030259.13	novel	5446	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6.48074069840786	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATACAATTGTTGCTTG	NA	False	NA	NA	False	AATAAA	-18	NA	145692473	145766800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_145692693_145696217_145696409_145754109_145754289_145760778_145761669_145762223_145762369_145762792
ENSMUSG00000030259.13_3	chr6	+	4710	3	ISM	ENSMUSG00000030259.13	ENSMUST00000032388.5	1733	4	7003	-3490	-4558	0	3prime_fragment	FALSE	canonical	2	4	junction_2	7	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATACAATTGTTGCTTG	NA	False	NA	NA	False	AATAAA	-18	NA	145761111	145766800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_145761669_145762223_145762369_145762792
ENSMUSG00000030259.13_4	chr6	+	2519	1	FSM	ENSMUSG00000030259.13	ENSMUST00000058538.7	1131	1	-1388	0	-1388	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATACAATTGTTGCTTG	NA	False	NA	NA	False	AATAAA	-18	NA	145764281	145766800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_145764300_145766800
ENSMUSG00000030263.14_12	chr6	+	1760	17	FSM	ENSMUSG00000030263.14	ENSMUST00000132948.2	1761	17	1	0	1	0	multi-exon	FALSE	canonical	1	3	junction_1	14.1684894660652	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145091203	145120654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_145091249_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
ENSMUSG00000030263.14_14	chr6	+	1382	9	ISM	ENSMUSG00000030263.14	ENSMUST00000132948.2	1761	17	15299	2	3029	-2	3prime_fragment	FALSE	canonical	3	39	junction_1	6.7256505261573	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCAGTGTGGCTGGAA	NA	False	NA	9	True	AATAAA	-14	NA	145106501	145120652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
ENSMUSG00000030263.14_20	chr6	+	3607	3	NIC	ENSMUSG00000030263.14	novel	938	5	NA	NA	-433	-7	intron_retention	FALSE	canonical	3	56	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTTTGTGCAGTGTGGC	NA	False	NA	4	True	AATAAA	-9	NA	145114797	145120647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_145117812_145119429_145119538_145120162
ENSMUSG00000030263.14_25	chr6	+	2900	18	NIC	ENSMUSG00000030263.14	novel	2319	19	NA	NA	-14	-1	intron_retention	FALSE	canonical	3	14	junction_2	13.4009244116406	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCAGTGTGGCTGGAAC	NA	False	NA	10	True	AATAAA	-15	NA	145067450	145120653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_145067833_145083185_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
ENSMUSG00000030263.14_31	chr6	+	1619	14	ISM	ENSMUSG00000030263.14	ENSMUST00000132948.2	1761	17	2486	0	2486	0	3prime_fragment	FALSE	canonical	3	25	junction_3	11.5194715526395	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145093688	145120654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
ENSMUSG00000030263.14_6	chr6	+	2354	20	NIC	ENSMUSG00000030263.14	novel	2319	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	15.9512762278257	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145067464	145120654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_145067833_145083185_145083334_145083771_145083813_145083907_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
ENSMUSG00000030263.14_7	chr6	+	2258	19	FSM	ENSMUSG00000030263.14	ENSMUST00000032396.13	2319	19	54	7	12	-1	multi-exon	FALSE	canonical	3	14	junction_2	13.9594872380979	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCAGTGTGGCTGGAAC	NA	False	NA	10	True	AATAAA	-15	NA	145067518	145120653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_145067833_145083185_145083334_145083907_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
ENSMUSG00000030263.14_8	chr6	+	2743	19	NIC	ENSMUSG00000030263.14	novel	2319	19	NA	NA	5	-2	intron_retention	FALSE	canonical	3	7	junction_2	14.613540144522	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCAGTGTGGCTGGAA	NA	False	NA	9	True	AATAAA	-14	NA	145067511	145120652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_145067833_145083185_145083813_145083907_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
ENSMUSG00000030264.15_0	chr6	+	2048	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	113	2	11	-2	multi-exon	TRUE	canonical	3	600	junction_1	54.2445309298778	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTATGGAAGCGTTATT	NA	False	NA	1	True	ATTAAA	-14	NA	113023298	113045232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUSG00000030264.15_14	chr6	+	2034	10	NIC	ENSMUSG00000030264.15	novel	855	4	NA	NA	-37	-2	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	204.840377481867	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTATGGAAGCGTTATT	NA	False	NA	1	True	ATTAAA	-14	NA	113023381	113045232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113023421_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUSG00000030265.15_2	chr6	-	2007	6	FSM	ENSMUSG00000030265.15	ENSMUST00000111710.8	1194	6	-46	-767	16	502	multi-exon	FALSE	canonical	3	20	junction_2	471.744252747185	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAATTTCGATGTTCGCT	NA	False	NA	-11	True	AATAAA	-8	NA	145195949	145165203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_145166451_145170799_145170924_145177820_145177981_145179973_145180153_145192420_145192543_145195774
ENSMUSG00000030265.15_3	chr6	-	2868	1	ISM	ENSMUSG00000030265.15	ENSMUST00000032399.12	4678	5	30665	8	5983	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATGAAGTGTGTAATTAT	NA	False	NA	-16	True	AATAAA	-14	NA	145165300	145162432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_145162400_145165300
ENSMUSG00000030265.15_4	chr6	-	1880	5	FSM	ENSMUSG00000030265.15	ENSMUST00000032399.12	4678	5	20	2778	-17	503	multi-exon	FALSE	canonical	3	862	junction_1	85.6661397519463	1332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTCGATGTTCGCTT	NA	False	NA	-10	True	AATAAA	-9	NA	145195945	145165202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_145166451_145177820_145177981_145179973_145180153_145192420_145192543_145195774
ENSMUSG00000030268.18_1	chr6	-	2423	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	133	0	133	0	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	5976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	8618	False	NA	-24	True	AATAAA	-16	NA	145021777	144944883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
ENSMUSG00000030268.18_14	chr6	-	2514	11	FSM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	-4	5323	-4	0	multi-exon	FALSE	canonical	3	243	junction_10	1157.84085262181	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	NA	False	NA	-24	True	AATAAA	-16	NA	144994542	144944883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144994288
ENSMUSG00000030269.15_12	chr6	+	2420	19	NIC	ENSMUSG00000030269.15	novel	2676	19	NA	NA	11	0	combination_of_known_junctions	TRUE	canonical	3	24	junction_17	81.7724183026387	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCTTTTCATTAGCATT	1987	False	NA	13	True	AATAAA	-14	NA	113214822	113258157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254791_113254907_113257563
ENSMUSG00000030269.15_3	chr6	+	2461	19	FSM	ENSMUSG00000030269.15	ENSMUST00000113146.9	2676	19	19	196	11	0	multi-exon	FALSE	canonical	3	298	junction_17	28.028204489649	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCTTTTCATTAGCATT	1987	False	NA	13	True	AATAAA	-14	NA	113214822	113258157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254750_113254907_113257563
ENSMUSG00000030269.15_5	chr6	+	2312	18	NIC	ENSMUSG00000030269.15	novel	2676	19	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	88.3270111554443	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCTTTTCATTAGCATT	1987	False	NA	13	True	AATAAA	-14	NA	113214822	113258157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113215083_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254750_113254907_113257563
ENSMUSG00000030269.15_6	chr6	+	2305	18	NIC	ENSMUSG00000030269.15	novel	2676	19	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_17	76.4492277859348	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCTTTTCATTAGCATT	1987	False	NA	13	True	AATAAA	-14	NA	113214822	113258157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113257563
ENSMUSG00000030270.12_4	chr6	+	1839	16	NIC	ENSMUSG00000030270.12	novel	2777	21	NA	NA	1346	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	5.73643327047972	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGTCTCATGGGTGT	NA	False	NA	3	True	AATAAA	-14	NA	113260671	113281787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113260944_113261345_113261423_113266945_113267010_113267127_113267232_113267365_113267471_113268998_113269041_113269326_113269403_113269482_113269537_113269963_113270026_113270669_113270717_113271572_113271755_113271986_113272115_113277523_113277627_113278600_113278659_113279009_113279084_113281396
ENSMUSG00000030270.12_6	chr6	+	877	5	ISM	ENSMUSG00000030270.12	ENSMUST00000134523.8	4143	13	6399	745	578	2	3prime_fragment	FALSE	canonical	3	13	junction_1	2.95803989154981	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGTCTCATGGGTGT	3984	False	NA	3	True	AATAAA	-14	NA	113271863	113281787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113272115_113277523_113277627_113278600_113278659_113279009_113279084_113281396
ENSMUSG00000030271.15_11	chr6	+	2133	6	NIC	ENSMUSG00000030271.15	novel	1601	7	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	238	junction_4	8.77724330299668	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAACGCAGTGAAGAGTG	2334	False	NA	8	True	AATAAA	-17	NA	113303958	113311143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113304324_113305325_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ENSMUSG00000030271.15_2	chr6	+	1515	7	FSM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	28	6	1	-2	multi-exon	FALSE	canonical	3	196	junction_2	21.4534379529249	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAACGCAGTGAAGAGTG	2336	False	NA	8	True	AATAAA	-17	NA	113303960	113311143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ENSMUSG00000030271.15_23	chr6	+	1381	7	NIC	ENSMUSG00000030271.15	novel	1549	7	NA	NA	0	-4	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	89.2070002235749	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAAAACGCAGTGAAGAG	2335	False	NA	6	True	AATAAA	-15	NA	113303959	113311141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113304324_113305325_113305441_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ENSMUSG00000030271.15_6	chr6	+	1597	7	FSM	ENSMUSG00000030271.15	ENSMUST00000136263.4	1601	7	4	0	4	0	multi-exon	FALSE	canonical	3	33	junction_2	81.0445693567572	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGCAGTGAAGAGTGAG	2339	False	NA	10	True	AATAAA	-19	NA	113303963	113311145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113304324_113305325_113305574_113306106_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ENSMUSG00000030272.16_0	chr6	-	1450	12	FSM	ENSMUSG00000030272.16	ENSMUST00000032409.15	1496	12	35	11	14	2	multi-exon	FALSE	canonical	3	50	junction_1	8.10570659096682	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAAGACAGTTCCGTTT	5828	False	NA	NA	False	AATAAA	-9	NA	113320910	113311095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113311370_113311474_113311593_113313134_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316385_113316467_113316543_113317252_113317385_113318828_113318944_113320796
ENSMUSG00000030272.16_1	chr6	-	1490	11	FSM	ENSMUSG00000030272.16	ENSMUST00000149497.4	1486	11	6	-10	6	1	multi-exon	FALSE	canonical	3	50	junction_1	7.23602100605022	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTCCGTTTGCTCAAAT	5879	False	NA	NA	False	AATAAA	-17	NA	113320859	113311087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113311370_113311474_113311593_113313134_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316543_113317252_113317385_113318828_113318944_113320796
ENSMUSG00000030275.7_1	chr6	+	6399	8	FSM	ENSMUSG00000030275.7	ENSMUST00000032413.7	6433	8	26	8	2	-8	multi-exon	FALSE	canonical	3	230	junction_4	19.0541655416813	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATAATGTGTCCATGTG	NA	False	NA	17	True	AATAAA	-30	NA	143112981	143154264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_143113363_143126312_143126573_143130298_143130440_143132217_143132361_143140957_143141042_143143130_143143292_143148804_143148879_143149109
ENSMUSG00000030275.7_18	chr6	+	3649	1	ISM	ENSMUSG00000030275.7	ENSMUST00000032413.7	6433	8	37664	4	37640	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGTGTCCATGTGGTTC	NA	False	NA	21	True	AATAAA	-34	NA	143150619	143154268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_143150600_143154300
ENSMUSG00000030276.20_10	chr6	+	2321	10	ISM	ENSMUSG00000030276.20	ENSMUST00000203524.3	2745	13	-91	4689	-91	-5	5prime_fragment	FALSE	canonical	3	13	junction_6	4.17517649512354	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATTGTTTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	113370029	113386855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113370156_113371652_113371822_113371958_113372057_113374890_113375020_113375730_113375846_113376627_113376733_113378262_113378459_113382259_113382409_113384136_113384381_113385865
ENSMUSG00000030276.20_22	chr6	+	2277	10	NIC	ENSMUSG00000030276.20	novel	3168	13	NA	NA	-91	-1155	intron_retention	FALSE	canonical	1	1	junction_5	6.96729573626262	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTCCAAAGTAGTCACC	NA	False	NA	NA	False	AATATA	-11	NA	113370029	113390364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113370156_113371652_113371822_113371958_113372057_113374890_113375020_113375730_113375846_113378262_113378459_113382259_113382409_113384136_113384381_113385865_113386302_113389749
ENSMUSG00000030276.20_5	chr6	+	1680	9	ISM	ENSMUSG00000030276.20	ENSMUST00000203524.3	2745	13	-91	6815	-91	-2131	5prime_fragment	FALSE	canonical	3	13	junction_6	4.1514304763539	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCTGACTATAATTTCTT	NA	False	NA	NA	False	NA	NA	NA	113370029	113384729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113370156_113371652_113371822_113371958_113372057_113374890_113375020_113375730_113375846_113376627_113376733_113378262_113378459_113382259_113382409_113384136
ENSMUSG00000030276.20_6	chr6	+	3548	11	ISM	ENSMUSG00000030276.20	ENSMUST00000203524.3	2745	13	-91	14	-91	0	intron_retention	FALSE	canonical	3	13	junction_6	3.96106046406767	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGCAAGT	NA	False	NA	NA	False	NA	NA	NA	113370029	113391530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113370156_113371652_113371822_113371958_113372057_113374890_113375020_113375730_113375846_113376627_113376733_113378262_113378459_113382259_113382409_113384136_113384381_113385865_113386302_113389749
ENSMUSG00000030279.16_0	chr6	-	4415	27	NIC	ENSMUSG00000030279.16	novel	3494	26	NA	NA	-2	-7	combination_of_known_junctions	FALSE	canonical	3	101	junction_4	21.2642225290113	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAACACATTCCTAACTC	NA	False	NA	NA	False	AATAAA	-9	NA	143045818	142956660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_142957863_142958927_142959075_142963608_142963800_142965053_142965156_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
ENSMUSG00000030279.16_10	chr6	-	4285	26	NIC	ENSMUSG00000030279.16	novel	3494	26	NA	NA	21	-9	combination_of_known_junctions	FALSE	canonical	3	101	junction_4	20.7068684257181	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAACAACACATTCCTAAC	NA	False	NA	NA	False	AATAAA	-7	NA	143045554	142956662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_142957863_142958927_142959075_142963608_142963800_142965053_142965156_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403
ENSMUSG00000030279.16_4	chr6	-	4315	26	FSM	ENSMUSG00000030279.16	ENSMUST00000203187.3	3494	26	-23	-798	-4	-7	multi-exon	FALSE	canonical	3	13	junction_3	32.7664218369965	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAACACATTCCTAACTC	NA	False	NA	NA	False	AATAAA	-9	NA	143045820	142956660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_142957863_142958927_142959075_142963608_142963800_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
ENSMUSG00000030279.16_45	chr6	-	3543	22	FSM	ENSMUSG00000030279.16	ENSMUST00000203349.3	4584	22	17	1024	0	-1024	multi-exon	FALSE	canonical	3	110	junction_6	17.6396276203619	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGAATGTATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	143045816	142974062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
ENSMUSG00000030279.16_5	chr6	-	4261	25	FSM	ENSMUSG00000030279.16	ENSMUST00000171349.8	4292	25	16	15	-1	-7	multi-exon	FALSE	canonical	3	38	junction_3	28.9653768412489	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAACACATTCCTAACTC	NA	False	NA	NA	False	AATAAA	-9	NA	143045817	142956660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_142957863_142958927_142959075_142963608_142963800_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
ENSMUSG00000030279.16_6	chr6	-	593	1	ISM	ENSMUSG00000030279.16	ENSMUST00000171349.8	4292	25	88580	15	2185	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAACACATTCCTAACTC	7564	False	NA	NA	False	AATAAA	-9	NA	142957253	142956660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_142956700_142957300
ENSMUSG00000030279.16_7	chr6	-	4202	25	ISM	ENSMUSG00000030279.16	ENSMUST00000203187.3	3494	26	224	-796	2	-9	3prime_fragment	FALSE	canonical	3	13	junction_3	32.8933461694341	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAACAACACATTCCTAAC	NA	False	NA	NA	False	AATAAA	-7	NA	143045573	142956662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_142957863_142958927_142959075_142963608_142963800_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403
ENSMUSG00000030279.16_8	chr6	-	4125	24	FSM	ENSMUSG00000030279.16	ENSMUST00000204655.3	3526	24	-54	-545	28	-9	multi-exon	FALSE	canonical	3	38	junction_3	28.8381180218075	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAACAACACATTCCTAAC	NA	False	NA	NA	False	AATAAA	-7	NA	143045547	142956662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_142957863_142958927_142959075_142963608_142963800_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403
ENSMUSG00000030281.17_0	chr6	+	2251	18	NIC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	94	-2	combination_of_known_junctions	FALSE	canonical	3	10	junction_7	10.3632969597244	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAAGTAGCACTCGTGTA	5850	False	NA	4	True	AATAAA	-19	NA	113448481	113460099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113451513_113451559_113453386_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
ENSMUSG00000030281.17_1	chr6	+	2301	18	NIC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	71	-2	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	8.17117899020487	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAAGTAGCACTCGTGTA	5827	False	NA	4	True	AATAAA	-19	NA	113448458	113460099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113451513_113451559_113453359_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
ENSMUSG00000030281.17_2	chr6	+	2255	17	NIC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	72	-2	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	10.8137643769411	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAAGTAGCACTCGTGTA	5828	False	NA	4	True	AATAAA	-19	NA	113448459	113460099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113453359_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
ENSMUSG00000030282.15_0	chr6	+	1690	8	FSM	ENSMUSG00000030282.15	ENSMUST00000032419.9	1760	8	61	9	-7	-9	multi-exon	FALSE	canonical	3	681	junction_7	54.6573743554204	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGAAGTTTCTGTACT	NA	False	NA	24	True	AATAAA	-13	NA	142702472	142721431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_142702753_142710012_142710156_142710279_142710436_142713529_142713664_142716248_142716344_142716891_142717064_142717840_142717995_142720875
ENSMUSG00000030282.15_1	chr6	+	3520	7	ISM	ENSMUSG00000030282.15	ENSMUST00000032419.9	1760	8	63	1058	-5	-8	5prime_fragment	FALSE	canonical	3	691	junction_3	53.4189417092227	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTTATTTATTGTGTGA	NA	False	NA	1	True	ATTAAA	-12	NA	142702474	142720382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_142702753_142710012_142710156_142710279_142710436_142713529_142713664_142716248_142716344_142716891_142717064_142717840
ENSMUSG00000030283.8_0	chr6	-	1067	1	ISM	ENSMUSG00000030283.8	ENSMUST00000032421.4	8991	5	141839	2	60427	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGAAGCTTCTGACGTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	142768339	142767272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_142767300_142768300
ENSMUSG00000030283.8_3	chr6	-	2078	5	FSM	ENSMUSG00000030283.8	ENSMUST00000032421.4	8991	5	278	6635	-33	52	multi-exon	FALSE	canonical	2	8	junction_4	3.11247489949718	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTTAAGTCTACTTAGCA	NA	False	NA	NA	False	TTTAAA	-24	NA	142909900	142773905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_142774997_142813579_142813673_142822373_142822484_142859749_142859895_142909261
ENSMUSG00000030284.12_1	chr6	+	2035	10	FSM	ENSMUSG00000030284.12	ENSMUST00000032422.6	2306	10	264	7	138	-4	multi-exon	TRUE	canonical	3	165	junction_1	17.0945085399441	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGGAAAAGCTTCAGT	1721	False	NA	6	True	AATAAA	-12	NA	113460521	113470292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113461038_113461455_113461539_113465031_113465143_113465439_113465532_113466394_113466572_113466655_113466752_113468613_113468698_113468854_113468951_113469084_113469220_113469647
ENSMUSG00000030286.7_0	chr6	-	1953	8	FSM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	21	11	-13	-11	multi-exon	FALSE	canonical	3	306	junction_2	13.3386044002714	394	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGTGAAAGTGTTGCTT	NA	False	NA	-9	True	ATTAAA	-18	NA	113508592	113491845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113492993_113494057_113494141_113494842_113494923_113496875_113496958_113497437_113497543_113499274_113499369_113499710_113499769_113508288
ENSMUSG00000030291.13_0	chr6	+	769	4	FSM	ENSMUSG00000030291.13	ENSMUST00000032429.9	814	4	42	3	-2	-3	multi-exon	FALSE	canonical	3	254	junction_3	35.4902177445498	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGTGGTTTTTGTTTGTC	NA	False	NA	33	True	AATAAA	-18	NA	146544086	146552097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_146544151_146549662_146549778_146550647_146550749_146551608
ENSMUSG00000030291.13_4	chr6	+	5858	3	FSM	ENSMUSG00000030291.13	ENSMUST00000075077.3	1713	3	-4175	30	394	-30	multi-exon	FALSE	canonical	3	254	junction_2	43	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAATAAAGCTCTTTGTT	NA	False	NA	6	True	ATTAAA	-6	NA	146544482	146552070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_146549778_146550647_146550749_146551608
ENSMUSG00000030298.11_1	chr6	-	1297	9	FSM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	45	11	29	-11	multi-exon	FALSE	canonical	3	942	junction_8	78.4968152220203	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAACTTTACTGTCATCC	2222	False	NA	-21	True	AATAAA	-12	NA	113717659	113705033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
ENSMUSG00000030298.11_6	chr6	-	1616	8	NIC	ENSMUSG00000030298.11	novel	1353	9	NA	NA	28	-8	intron_retention	FALSE	canonical	3	942	junction_7	83.0657472568985	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTTACTGTCATCCCAC	2221	False	NA	-18	True	AATAAA	-15	NA	113717660	113705030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113705425_113706556_113706704_113707295_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
ENSMUSG00000030301.18_0	chr6	+	2376	14	NIC	ENSMUSG00000030301.18	novel	2459	13	NA	NA	-2	-9	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	34.4726973691547	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAAGTTGCTTGATTGTC	NA	False	NA	8	True	AATAAA	-9	NA	147377366	147534101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_147377394_147409281_147409326_147412321_147412401_147434773_147434862_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
ENSMUSG00000030301.18_1	chr6	+	2287	13	NIC	ENSMUSG00000030301.18	novel	2459	13	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	22.1514672200286	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTTGCTTGATTGTCA	NA	False	NA	9	True	AATAAA	-10	NA	147377368	147534102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_147377394_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
ENSMUSG00000030301.18_2	chr6	+	2418	13	FSM	ENSMUSG00000030301.18	ENSMUST00000032441.14	2459	13	33	8	33	-8	multi-exon	FALSE	canonical	3	65	junction_1	9.07683253612673	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTTGCTTGATTGTCA	NA	False	NA	9	True	AATAAA	-10	NA	147377401	147534102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_147377558_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
ENSMUSG00000030302.17_0	chr6	-	5593	23	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	42	-1	combination_of_known_junctions	FALSE	canonical	3	15	junction_9	7.70799734953872	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATTGAGATGTATTCAGT	NA	False	NA	NA	False	AATGAA	-13	NA	113868289	113724027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113725810_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113774070_113774113_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
ENSMUSG00000030302.17_10	chr6	-	4761	20	FSM	ENSMUSG00000030302.18	ENSMUST00000089003.12	7067	20	186	2120	17	505	multi-exon	FALSE	canonical	0	0	junction_14	9.67906041546987	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTGCCTTGTTTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	113868314	113724749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113725810_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
ENSMUSG00000030302.17_13	chr6	-	4171	23	NIC	ENSMUSG00000030302.18	novel	7326	24	NA	NA	2	-6447	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	8.47407324463106	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGACCAAGAGTTCTCA	NA	False	NA	NA	False	AATAAA	-19	NA	113868329	113732029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113732350_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113774070_113774113_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
ENSMUSG00000030302.17_14	chr6	-	2336	12	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	28	13857	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	6.72972928120791	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACCTTTTTTGGGACAT	NA	False	NA	NA	False	AATAAA	-12	NA	113868303	113766441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113766957_113770626_113770842_113773199_113773359_113774070_113774113_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
ENSMUSG00000030302.17_15	chr6	-	2280	11	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	42	13857	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	9.96192752432982	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACCTTTTTTGGGACAT	NA	False	NA	NA	False	AATAAA	-12	NA	113868289	113766441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113766957_113770626_113770842_113773199_113773359_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
ENSMUSG00000030302.17_19	chr6	-	6891	21	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	43	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	9.44404574321832	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTATGCAATGGTTATG	NA	False	NA	-6	True	AATAAA	-24	NA	113868288	113722635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113725810_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113774070_113774113_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
ENSMUSG00000030302.17_23	chr6	-	2199	9	ISM	ENSMUSG00000030302.18	ENSMUST00000205052.3	5658	20	201	42413	32	13859	5prime_fragment	FALSE	canonical	0	0	junction_3	12.5099960031968	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTTTTTTGGGACATGG	NA	False	NA	NA	False	AATAAA	-14	NA	113868299	113766439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_113766957_113770626_113770842_113773199_113773359_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
ENSMUSG00000030302.17_3	chr6	-	7155	24	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	44	-5	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	9.33740571880948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTATGCAATGGTTATG	NA	False	NA	-6	True	AATAAA	-24	NA	113868287	113722635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113725810_113732177_113732350_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113774070_113774113_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
ENSMUSG00000030302.17_6	chr6	-	6497	21	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	49095	-5	combination_of_known_splicesites	FALSE	canonical	2	5	junction_14	9.09326673973661	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTATGCAATGGTTATG	NA	False	NA	-6	True	AATAAA	-24	NA	113819236	113722635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113725810_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092
ENSMUSG00000030302.17_9	chr6	-	5573	22	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	27	6	combination_of_known_splicesites	FALSE	canonical	2	5	junction_14	8.97337962810631	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTATTCAGTGTGATTT	NA	False	NA	NA	False	AATGAA	-20	NA	113868304	113724020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113725810_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
ENSMUSG00000030304.12_0	chr6	-	2852	14	FSM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	354	968	1	-968	multi-exon	FALSE	canonical	3	798	junction_5	68.0164442351299	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATTTGTTTAAAGCAAAC	NA	False	NA	-16	True	ATTAAA	-13	NA	148113518	148081544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
ENSMUSG00000030304.12_11	chr6	-	2964	15	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	0	-968	combination_of_known_junctions	FALSE	canonical	3	34	junction_13	326.611866325291	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATTTGTTTAAAGCAAAC	NA	False	NA	-16	True	ATTAAA	-13	NA	148113519	148081544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148107597_148107709_148108030_148108174_148113467
ENSMUSG00000030304.12_3	chr6	-	2820	14	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	5	-966	combination_of_known_junctions	FALSE	canonical	3	44	junction_4	251.358274676846	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTGTTTAAAGCAAACTT	NA	False	NA	-14	True	ATTAAA	-15	NA	148113514	148081542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089599_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
ENSMUSG00000030304.12_6	chr6	-	1621	13	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	1	9	combination_of_known_splicesites	FALSE	canonical	3	36	junction_9	251.686423065599	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTGTTACAGCCATATT	NA	False	NA	38	True	AATAAA	-16	NA	148113518	148082704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148103993_148104041_148106273_148106383_148108030_148108174_148113467
ENSMUSG00000030306.15_0	chr6	-	3391	1	ISM	ENSMUSG00000030306.15	ENSMUST00000060095.15	8383	20	208558	11	205804	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATAAGAATTCTGTCTG	NA	False	NA	NA	False	AATAAA	-35	NA	148137329	148133938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_148133900_148137300
ENSMUSG00000030306.15_2	chr6	-	3928	20	FSM	ENSMUSG00000030306.15	ENSMUST00000060095.15	8383	20	290	4165	290	-4165	multi-exon	FALSE	canonical	0	0	junction_15	3.28599816395536	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTGTTTTTTTCCTCT	8997	False	NA	NA	False	TATAAA	-20	NA	148345597	148138092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_148139433_148144685_148144764_148146181_148146305_148147208_148147347_148148231_148148377_148148900_148149037_148150985_148151089_148164280_148164390_148172873_148173018_148186354_148186469_148196012_148196181_148207495_148207618_148226614_148226805_148237140_148237245_148237748_148237831_148312535_148312740_148314139_148314317_148317207_148317282_148327304_148327483_148345398
ENSMUSG00000030309.17_1	chr6	-	2982	18	FSM	ENSMUSG00000030309.17	ENSMUST00000072324.12	2952	18	-30	0	-18	0	multi-exon	FALSE	canonical	3	19	junction_10	17.2566621205624	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCAGTTGTTTCTGTTT	NA	False	NA	-2	True	AATAAA	-13	NA	148797678	148743990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
ENSMUSG00000030309.17_2	chr6	-	4500	18	ISM	ENSMUSG00000030309.17	ENSMUST00000111569.9	3697	19	57	1	-18	0	intron_retention	FALSE	canonical	3	65	junction_10	8.75226120065937	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCAGTTGTTTCTGTTT	NA	False	NA	-2	True	AATAAA	-13	NA	148797678	148743990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148770486_148771144_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434
ENSMUSG00000030309.17_3	chr6	-	3639	19	FSM	ENSMUSG00000030309.17	ENSMUST00000111569.9	3697	19	57	1	-18	0	multi-exon	FALSE	canonical	3	65	junction_10	9.04805415272352	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCAGTTGTTTCTGTTT	NA	False	NA	-2	True	AATAAA	-13	NA	148797678	148743990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148770486_148771144_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
ENSMUSG00000030309.17_33	chr6	-	3689	19	NIC	ENSMUSG00000030309.17	novel	3697	19	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_18	20.5087304505022	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCAGTTGTTTCTGTTT	NA	False	NA	-2	True	AATAAA	-13	NA	148797678	148743990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148770486_148771144_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796705_148797515
ENSMUSG00000030309.17_35	chr6	-	4916	19	NIC	ENSMUSG00000030309.17	novel	3697	19	NA	NA	-18	-1	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	20.7879505697144	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTCCAGTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-12	NA	148797678	148743991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_148746175_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148770486_148771144_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
ENSMUSG00000030309.17_4	chr6	-	3978	16	ISM	ENSMUSG00000030309.17	ENSMUST00000111569.9	3697	19	11918	1	6508	0	3prime_fragment	FALSE	canonical	3	65	junction_10	9.12481354451817	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCAGTTGTTTCTGTTT	NA	False	NA	-2	True	AATAAA	-13	NA	148785817	148743990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148770486_148771144_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945
ENSMUSG00000030309.17_40	chr6	-	663	1	FSM	ENSMUSG00000030309.17	ENSMUST00000203014.2	1163	1	499	1	499	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCAGTTGTTTCTGTTT	NA	False	NA	-2	True	AATAAA	-13	NA	148744653	148743990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_148744000_148744700
ENSMUSG00000030310.11_0	chr6	+	4137	16	FSM	ENSMUSG00000030310.11	ENSMUST00000032454.8	4302	16	155	10	0	-10	multi-exon	FALSE	canonical	3	71	junction_3	10.8558228103119	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATGGTGTATTGGTTAC	NA	False	NA	2	True	AATAAA	-10	NA	114259750	114294483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_114259838_114278015_114278066_114278823_114279149_114279460_114279593_114279707_114279809_114280918_114281029_114281747_114281881_114284657_114284793_114284985_114285090_114285518_114285644_114287098_114287212_114287423_114287556_114288765_114288869_114290399_114290501_114291255_114291424_114292265
ENSMUSG00000030310.11_18	chr6	+	1671	1	ISM	ENSMUSG00000030310.11	ENSMUST00000032454.8	4302	16	33217	10	2563	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATGGTGTATTGGTTAC	10025	False	NA	2	True	AATAAA	-10	NA	114292812	114294483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_114292800_114294500
ENSMUSG00000030313.16_10	chr6	-	177	1	ISM	ENSMUSG00000030313.16	ENSMUST00000111557.8	9831	21	111416	2017	26924	-2017	mono-exon	FALSE	NA	NA	NA	NA	NA	326	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9407	False	NA	NA	False	NA	NA	NA	148891762	148891585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_148891600_148891800
ENSMUSG00000030313.16_2	chr6	-	5160	21	FSM	ENSMUSG00000030313.16	ENSMUST00000111557.8	9831	21	147	4524	5	-4524	multi-exon	FALSE	canonical	3	13	junction_11	5.03487835006964	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGAGGAGGTCTCAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	149003031	148894092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_148895388_148899754_148899930_148901418_148901546_148902096_148902180_148906663_148906852_148908223_148908343_148911252_148911399_148915613_148915736_148918479_148918609_148920838_148920921_148922042_148922122_148928780_148928934_148930607_148930740_148934763_148934858_148937883_148938035_148943013_148943246_148945980_148946518_148956397_148956586_148969547_148970215_148982303_148982414_149002680
ENSMUSG00000030314.17_0	chr6	+	2540	21	FSM	ENSMUSG00000030314.17	ENSMUST00000182902.8	2543	21	-2	5	0	-2	multi-exon	FALSE	canonical	3	8	junction_1	41.8782759912583	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCTGGGGCTCAGGTC	NA	False	NA	1	True	NA	NA	NA	114620087	114836180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_114620112_114648062_114648214_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
ENSMUSG00000030314.17_1	chr6	+	2341	19	FSM	ENSMUSG00000030314.17	ENSMUST00000032457.17	3761	19	28	1392	-2	0	multi-exon	FALSE	canonical	3	23	junction_1	29.6327313191359	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGGGGCTCAGGTCCTT	NA	False	NA	4	True	NA	NA	NA	114620085	114836183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_114620112_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
ENSMUSG00000030314.17_10	chr6	+	2513	21	NIC	ENSMUSG00000030314.17	novel	2459	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	41.3278356558869	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGGGGCTCAGGTCCTT	NA	False	NA	4	True	NA	NA	NA	114620087	114836183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_114620112_114623897_114624019_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
ENSMUSG00000030314.17_19	chr6	+	2365	19	ISM	ENSMUSG00000030314.17	ENSMUST00000182902.8	2543	21	29662	5	-7371	-2	3prime_fragment	FALSE	canonical	3	88	junction_1	17.450901140551	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCTGGGGCTCAGGTC	821	False	NA	1	True	NA	NA	NA	114649751	114836180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
ENSMUSG00000030314.17_2	chr6	+	2393	20	NIC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	29.4466041008941	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGGGCTCAGGTCCTTC	NA	False	NA	5	True	NA	NA	NA	114620087	114836184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_114620112_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
ENSMUSG00000030316.14_0	chr6	-	1137	8	FSM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	24	7	3	0	multi-exon	FALSE	canonical	3	439	junction_6	13.6695699587494	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCTTGTCACTCTG	NA	False	NA	-41	True	AATAAA	-18	NA	115014813	114981348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011911_115012095_115014610
ENSMUSG00000030316.14_23	chr6	-	1770	4	NIC	ENSMUSG00000030316.14	novel	531	2	NA	NA	11	814	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	196.862614248843	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGTGTGCAAATGTTT	NA	False	NA	0	True	ATTAAA	-20	NA	115014805	115007424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_115008724_115009180_115009274_115011911_115012095_115014610
ENSMUSG00000030316.14_28	chr6	-	2330	4	ISM	ENSMUSG00000030316.14	ENSMUST00000154621.3	724	6	-28	14262	2	813	5prime_fragment	FALSE	canonical	3	21	junction_2	197.90626288445	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAATGTGTGCAAATGTT	NA	False	NA	-1	True	ATTAAA	-19	NA	115014814	115007425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_115009274_115011116_115011212_115011911_115012095_115014610
ENSMUSG00000030319.9_1	chr6	+	4729	15	FSM	ENSMUSG00000030319.9	ENSMUST00000075995.7	5474	15	52	693	52	-693	multi-exon	FALSE	canonical	3	54	junction_11	12.5155005933459	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTTTCTCTCCAGTCAT	NA	False	NA	13	True	AATAAA	-10	NA	115751550	115781825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_115751640_115757807_115757952_115758568_115758724_115759697_115759822_115762066_115762333_115763836_115763943_115764090_115764231_115766399_115766693_115768152_115768295_115768629_115770133_115772736_115772833_115774830_115775001_115776820_115776986_115778809_115778918_115780597
ENSMUSG00000030319.9_10	chr6	+	2728	6	ISM	ENSMUSG00000030319.9	ENSMUST00000075995.7	5474	15	17679	687	17679	-687	3prime_fragment	FALSE	canonical	3	54	junction_2	13.0476051442401	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTCCAGTCATTTAAGT	6901	False	NA	19	True	AATAAA	-16	NA	115769177	115781831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_115770133_115772736_115772833_115774830_115775001_115776820_115776986_115778809_115778918_115780597
ENSMUSG00000030319.9_24	chr6	+	1074	1	ISM	ENSMUSG00000030319.9	ENSMUST00000075995.7	5474	15	29282	664	29282	-664	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCGTGACAGTCAACCCTT	6194	False	NA	42	True	AATAAA	-39	NA	115780780	115781854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_115780800_115781900
ENSMUSG00000030319.9_9	chr6	+	3678	8	ISM	ENSMUSG00000030319.9	ENSMUST00000075995.7	5474	15	14928	693	14928	-693	3prime_fragment	FALSE	canonical	3	54	junction_4	12.3139211082914	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTTTCTCTCCAGTCAT	4150	False	NA	13	True	AATAAA	-10	NA	115766426	115781825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_115766693_115768152_115768295_115768629_115770133_115772736_115772833_115774830_115775001_115776820_115776986_115778809_115778918_115780597
ENSMUSG00000030321.16_1	chr6	-	2418	9	FSM	ENSMUSG00000030321.16	ENSMUST00000184428.6	2384	9	124	-158	124	-9	multi-exon	FALSE	canonical	1	3	junction_5	2.36841191518705	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTAGCCTTGCTCGTGT	NA	False	NA	NA	False	AATAAA	-28	NA	115815249	115787698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_115788195_115789154_115789212_115791461_115791613_115792898_115793113_115794193_115794391_115797005_115797163_115799077_115799264_115800217_115800673_115814744
ENSMUSG00000030322.13_0	chr6	-	3590	8	FSM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	14	10	8	-10	multi-exon	FALSE	canonical	0	0	junction_7	37.2010533096435	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGTAAGGTCCCTTTG	7895	False	NA	NA	False	AATAAA	-11	NA	115830318	115817667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115830097
ENSMUSG00000030322.13_19	chr6	-	2788	6	ISM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	3998	10	-407	-10	3prime_fragment	FALSE	canonical	3	97	junction_2	5.9464274989274	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGTAAGGTCCCTTTG	NA	False	NA	NA	False	AATAAA	-11	NA	115826334	115817667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866
ENSMUSG00000030322.13_3	chr6	-	1365	1	ISM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	11301	9	6635	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTAAGGTCCCTTTGG	NA	False	NA	NA	False	AATAAA	-12	NA	115819031	115817666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_115817700_115819000
ENSMUSG00000030322.13_9	chr6	-	4024	8	NIC	ENSMUSG00000030322.13	novel	3614	8	NA	NA	27	-9	intron_retention	FALSE	canonical	3	62	junction_7	15.9770243200181	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTAAGGTCCCTTTGG	7914	False	NA	NA	False	AATAAA	-12	NA	115830299	115817666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115829645
ENSMUSG00000030323.14_1	chr6	+	4000	29	FSM	ENSMUSG00000030323.14	ENSMUST00000112925.8	4122	29	117	5	-1	0	multi-exon	FALSE	canonical	3	30	junction_5	9.69483346522091	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTGTCTGCGTTTTAGC	NA	False	NA	5	True	AATAAA	-17	NA	115830547	115903655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115882918_115887185_115887353_115889391_115889564_115890832_115890936_115892867_115893009_115893933_115894029_115897311_115897413_115900226_115900393_115900836_115900949_115901307_115901434_115902376_115902457_115902713_115902879_115903196
ENSMUSG00000030323.14_22	chr6	+	3093	20	ISM	ENSMUSG00000030323.14	ENSMUST00000112925.8	4122	29	33751	5	81	0	3prime_fragment	FALSE	canonical	3	39	junction_19	8.12062795219373	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTGTCTGCGTTTTAGC	NA	False	NA	5	True	AATAAA	-17	NA	115864181	115903655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115882918_115887185_115887353_115889391_115889564_115890832_115890936_115892867_115893009_115893933_115894029_115897311_115897413_115900226_115900393_115900836_115900949_115901307_115901434_115902376_115902457_115902713_115902879_115903196
ENSMUSG00000030323.14_5	chr6	+	4178	30	FSM	ENSMUSG00000030323.14	ENSMUST00000112923.7	3765	30	-49	-364	-2	0	multi-exon	FALSE	canonical	1	1	junction_7	14.4972833569763	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTGTCTGCGTTTTAGC	NA	False	NA	5	True	AATAAA	-17	NA	115830546	115903655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115859607_115859785_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115882918_115887185_115887353_115889391_115889564_115890832_115890936_115892867_115893009_115893933_115894029_115897311_115897413_115900226_115900393_115900836_115900949_115901307_115901434_115902376_115902457_115902713_115902879_115903196
ENSMUSG00000030323.14_6	chr6	+	4014	29	FSM	ENSMUSG00000030323.14	ENSMUST00000038234.13	4056	29	45	-3	-5	0	multi-exon	FALSE	canonical	2	3	junction_21	12.6374080266743	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTGTCTGCGTTTTAG	NA	False	NA	4	True	AATAAA	-16	NA	115830535	115903654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115882918_115887185_115887353_115889391_115889564_115890832_115890936_115892867_115893009_115893930_115894029_115897311_115897413_115900226_115900393_115900836_115900949_115901307_115901434_115902376_115902457_115902713_115902879_115903196
ENSMUSG00000030323.14_7	chr6	+	4195	30	NIC	ENSMUSG00000030323.14	novel	3765	30	NA	NA	-18	-6	combination_of_known_junctions	FALSE	canonical	1	1	junction_7	16.3185442683849	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGTTTTCATCAGTGTCT	NA	False	NA	-5	True	AATAAA	-7	NA	115830522	115903645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115859607_115859785_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115882918_115887185_115887353_115889391_115889564_115890832_115890936_115892867_115893009_115893930_115894029_115897311_115897413_115900226_115900393_115900836_115900949_115901307_115901434_115902376_115902457_115902713_115902879_115903196
ENSMUSG00000030327.9_0	chr6	+	2386	8	FSM	ENSMUSG00000030327.9	ENSMUST00000032477.6	2476	8	83	7	8	-7	multi-exon	FALSE	canonical	3	520	junction_7	29.158959137102	769	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTATTGGTTTTTCA	871	False	NA	2	True	ATTAAA	-8	NA	122851515	122865893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_122851623_122857371_122857473_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298
ENSMUSG00000030329.12_1	chr6	+	2152	6	FSM	ENSMUSG00000030329.12	ENSMUST00000032479.11	2250	6	91	7	-77	-7	multi-exon	FALSE	canonical	3	20	junction_1	10.6094297678999	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAATTTAGTTGCCTGT	8121	False	NA	9	True	AATAAA	-9	NA	124973747	124980052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124973903_124975880_124975941_124976197_124976704_124977616_124977699_124978389_124978612_124978925
ENSMUSG00000030329.12_10	chr6	+	2412	4	ISM	ENSMUSG00000030329.12	ENSMUST00000162170.8	2053	6	380	7	178	-7	intron_retention	FALSE	canonical	3	36	junction_1	7.1336448530109	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAATTTAGTTGCCTGT	NA	False	NA	9	True	AATAAA	-9	NA	124975779	124980052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_124975941_124976197_124976704_124977616_124977699_124978389
ENSMUSG00000030329.12_11	chr6	+	1026	1	ISM	ENSMUSG00000030329.12	ENSMUST00000032479.11	2250	6	5375	2	2407	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTAGTTGCCTGTTTTGC	NA	False	NA	14	True	AATAAA	-14	NA	124979031	124980057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_124979000_124980100
ENSMUSG00000030329.12_2	chr6	+	3219	4	ISM	ENSMUSG00000030329.12	ENSMUST00000032479.11	2250	6	29	7	29	-7	intron_retention	FALSE	canonical	3	20	junction_1	13.4742552876052	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAATTTAGTTGCCTGT	8059	False	NA	9	True	AATAAA	-9	NA	124973685	124980052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_124973903_124975880_124975941_124976197_124976704_124977616
ENSMUSG00000030329.12_3	chr6	+	2511	5	FSM	ENSMUSG00000030329.12	ENSMUST00000162000.4	2396	5	-118	3	50	-3	multi-exon	FALSE	canonical	3	20	junction_1	11.842719282327	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTAGTTGCCTGTTTTG	8080	False	NA	13	True	AATAAA	-13	NA	124973706	124980056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124973903_124975880_124975941_124976197_124976704_124977616_124977699_124978389
ENSMUSG00000030329.12_5	chr6	+	1998	5	ISM	ENSMUSG00000030329.12	ENSMUST00000162170.8	2053	6	480	7	278	-7	3prime_fragment	FALSE	canonical	3	36	junction_1	6.9462219947249	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAATTTAGTTGCCTGT	NA	False	NA	9	True	AATAAA	-9	NA	124975879	124980052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_124975941_124976197_124976704_124977616_124977699_124978389_124978612_124978925
ENSMUSG00000030330.16_0	chr6	+	1618	8	FSM	ENSMUSG00000030330.16	ENSMUST00000032480.14	1629	8	8	3	-4	-3	multi-exon	FALSE	canonical	3	91	junction_4	19.3527933964298	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATATGTGTGTGCGGTGA	7115	False	NA	3	True	AATAAA	-13	NA	125016806	125026224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_11	chr6	+	1817	7	NIC	ENSMUSG00000030330.16	novel	1629	8	NA	NA	-4	0	intron_retention	FALSE	canonical	0	0	junction_4	53.6109959699397	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7115	False	NA	6	True	AATAAA	-16	NA	125016806	125026227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024280_125024444_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_17	chr6	+	1392	6	NIC	ENSMUSG00000030330.16	novel	1629	8	NA	NA	0	-1	intron_retention	FALSE	canonical	3	33	junction_2	44.0336235165811	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGCTGTGTTTATTGTA	7119	False	NA	7	True	AATAAA	-14	NA	125016810	125025964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_125016861_125020916_125020989_125024173_125024289_125024444_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_2	chr6	+	1461	7	NIC	ENSMUSG00000030330.16	novel	1629	8	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_2	40.4533338826632	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7108	False	NA	6	True	AATAAA	-16	NA	125016799	125026227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_125016861_125020916_125020989_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_27	chr6	+	1361	8	FSM	ENSMUSG00000030330.16	ENSMUST00000140131.8	1446	8	84	1	-4	-1	multi-exon	FALSE	canonical	3	42	junction_4	35.3345526679608	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGCTGTGTTTATTGTA	7115	False	NA	7	True	AATAAA	-14	NA	125016806	125025964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024441_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_5	chr6	+	1608	8	NIC	ENSMUSG00000030330.16	novel	1629	8	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	49.655548223615	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATATGTGTGTGCGGTG	7115	False	NA	2	True	AATAAA	-12	NA	125016806	125026223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024280_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_8	chr6	+	1825	7	ISM	ENSMUSG00000108037.3	ENSMUST00000140883.7	3181	10	0	2235	0	-2235	5prime_fragment	FALSE	canonical	3	91	junction_4	20.4857674170793	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7116	False	NA	6	True	AATAAA	-16	NA	125016807	125026227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024904_125025138_125025201_125025330
ENSMUSG00000030335.7_0	chr6	+	798	3	FSM	ENSMUSG00000030335.7	ENSMUST00000136804.2	855	3	23	34	23	-34	multi-exon	FALSE	canonical	3	70	junction_1	333	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCCCAGTGCTACATTT	NA	False	NA	15	True	AATAAA	-25	NA	125168786	125170487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125169172_125169478_125169590_125170185
ENSMUSG00000030335.7_1	chr6	+	644	3	FSM	ENSMUSG00000030335.7	ENSMUST00000032485.7	3427	3	38	2745	-14	-34	multi-exon	FALSE	canonical	3	716	junction_1	10	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCCCAGTGCTACATTT	NA	False	NA	15	True	AATAAA	-25	NA	125169165	125170487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125169397_125169478_125169590_125170185
ENSMUSG00000030337.17_0	chr6	+	3211	4	FSM	ENSMUSG00000030337.17	ENSMUST00000100942.9	3011	4	-198	-2	-168	2	multi-exon	FALSE	canonical	2	3	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTGACTTGATTGTTGT	152	False	NA	NA	False	AATACA	-13	NA	125192345	125199128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125192691_125195536_125195664_125195873_125196033_125196548
ENSMUSG00000030339.8_0	chr6	-	2078	10	FSM	ENSMUSG00000030339.8	ENSMUST00000032489.8	2107	10	28	1	28	-1	multi-exon	FALSE	canonical	3	11	junction_6	2.62936879248872	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTTGGGTTTTATGTG	NA	False	NA	-1	True	AATAAA	-20	NA	125290820	125283534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_125284435_125284892_125285110_125286156_125286183_125286421_125286530_125289005_125289086_125289232_125289330_125289714_125289874_125289956_125290083_125290352_125290450_125290552
ENSMUSG00000030340.17_1	chr6	+	3451	12	FSM	ENSMUSG00000030340.17	ENSMUST00000081440.14	3499	12	42	6	-29	4	multi-exon	FALSE	canonical	2	3	junction_6	2.74539434009845	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAACAGTGTCTGCAGTG	NA	False	NA	NA	False	NA	NA	NA	125298344	125321900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125299338_125307873_125308148_125309055_125309247_125314759_125314864_125315198_125315363_125315799_125315899_125316068_125316187_125319564_125319644_125319750_125319809_125319983_125320040_125320184_125320261_125320661
ENSMUSG00000030341.18_0	chr6	+	2149	10	FSM	ENSMUSG00000030341.18	ENSMUST00000032491.15	2156	10	-2	9	-2	-9	multi-exon	TRUE	canonical	3	24	junction_1	4.54062594260057	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGATCGCTGACCCTG	3774	False	NA	6	True	AATACA	-11	NA	125326683	125339438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125327026_125333787_125333942_125334275_125334405_125334683_125334834_125335016_125335096_125337459_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649
ENSMUSG00000030341.18_5	chr6	+	1695	5	FSM	ENSMUSG00000030341.18	ENSMUST00000134803.2	764	5	-330	-601	-330	-9	multi-exon	FALSE	canonical	3	27	junction_3	5.67340285895511	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGATCGCTGACCCTG	NA	False	NA	6	True	AATACA	-11	NA	125337059	125339438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649
ENSMUSG00000030342.9_0	chr6	-	1157	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	69	2	69	-2	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	2846	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCGGGCTGATTGCTGG	NA	False	NA	-12	True	AATAAA	-13	NA	125471685	125437230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
ENSMUSG00000030345.17_0	chr6	-	1112	5	ISM	ENSMUSG00000030345.17	ENSMUST00000078521.7	2252	15	36402	-2	-53	2	3prime_fragment	FALSE	canonical	2	4	junction_4	3.57071421427143	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTGTCAATCTATGCC	NA	False	NA	-10	True	AATAAA	-19	NA	126862400	126852980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_126853514_126854122_126854302_126857187_126857318_126860989_126861051_126862191
ENSMUSG00000030346.17_0	chr6	-	1862	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112220.8	2233	9	1	370	1	-5	multi-exon	FALSE	canonical	3	81	junction_4	57.8721651573535	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATGTGCATGCCTCGCC	5266	False	NA	-10	True	AATAAA	-16	NA	126916549	126900382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904651_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
ENSMUSG00000030346.17_11	chr6	-	1852	9	NIC	ENSMUSG00000030346.17	novel	1871	9	NA	NA	6	-4	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	81.3460970176197	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGTGCATGCCTCGCCT	5287	False	NA	-9	True	AATAAA	-17	NA	126916528	126900381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911669_126911813_126912915_126912972_126916456
ENSMUSG00000030346.17_21	chr6	-	2250	4	ISM	ENSMUSG00000030346.17	ENSMUST00000112221.8	1871	9	11031	4	-286	-4	intron_retention	FALSE	canonical	3	195	junction_2	28.0752955856608	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGTGCATGCCTCGCCT	NA	False	NA	-9	True	AATAAA	-17	NA	126905519	126900381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500
ENSMUSG00000030346.17_27	chr6	-	2290	8	NIC	ENSMUSG00000030346.17	novel	1871	9	NA	NA	6	-9	intron_retention	FALSE	canonical	3	195	junction_2	26.1635359277927	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTAAAATGTGCATGCCT	5287	False	NA	-14	True	AATAAA	-12	NA	126916528	126900386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
ENSMUSG00000030346.17_5	chr6	-	897	1	ISM	ENSMUSG00000030346.17	ENSMUST00000112220.8	2233	9	15272	369	1420	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGTGCATGCCTCGCCT	NA	False	NA	-9	True	AATAAA	-17	NA	126901278	126900381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_126900400_126901300
ENSMUSG00000030346.17_7	chr6	-	1854	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112221.8	1871	9	12	5	0	-5	multi-exon	FALSE	canonical	3	112	junction_4	48.7748334184751	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATGTGCATGCCTCGCC	5277	False	NA	-10	True	AATAAA	-16	NA	126916538	126900382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
ENSMUSG00000030347.7_0	chr6	+	2141	14	FSM	ENSMUSG00000030347.7	ENSMUST00000032497.7	2501	14	10	350	1	3	multi-exon	FALSE	canonical	3	74	junction_10	14.682034265643	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTCATGTGAAAATGTT	NA	False	NA	NA	False	AATATA	-13	NA	126916938	126952580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_126916990_126919274_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842_126944046_126950518_126950577_126951449_126951518_126952073
ENSMUSG00000030347.7_12	chr6	+	2372	14	NIC	ENSMUSG00000030347.7	novel	2501	14	NA	NA	-6	-3	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	30.9083393890222	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTATAAATTTCATGTGAA	NA	False	NA	NA	False	AATATA	-7	NA	126916985	126952574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_126917274_126919274_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842_126944046_126950518_126950577_126951449_126951518_126952073
ENSMUSG00000030347.7_13	chr6	+	2092	13	ISM	ENSMUSG00000030347.7	ENSMUST00000032497.7	2501	14	2344	350	2281	3	3prime_fragment	FALSE	canonical	3	74	junction_9	15.1455897504484	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTCATGTGAAAATGTT	NA	False	NA	NA	False	AATATA	-13	NA	126919272	126952580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842_126944046_126950518_126950577_126951449_126951518_126952073
ENSMUSG00000030350.9_0	chr6	-	2705	10	FSM	ENSMUSG00000030350.9	ENSMUST00000032500.9	2724	10	13	6	13	-6	multi-exon	FALSE	canonical	1	4	junction_7	3.18948890986829	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGCAATGAGTACCTC	NA	False	NA	-4	True	AATAAA	-11	NA	127746422	127665979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_127666872_127667572_127667695_127674647_127674799_127680839_127680956_127688104_127688193_127688744_127688888_127703487_127703552_127706372_127706529_127709597_127709784_127745635
ENSMUSG00000030352.16_1	chr6	-	3910	9	FSM	ENSMUSG00000030352.16	ENSMUST00000032503.12	1405	9	-4	-2501	-1	-10	multi-exon	FALSE	canonical	3	88	junction_5	10.9971587239614	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCACAACCAGACTGTT	6162	False	NA	-12	True	AATAAA	-16	NA	128120527	127938368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043_127944236_128011128_128011209_128060344_128060445_128120476
ENSMUSG00000030352.16_4	chr6	-	3857	8	ISM	ENSMUSG00000030352.16	ENSMUST00000112171.8	2584	9	53230	-1396	40837	-10	3prime_fragment	FALSE	canonical	3	88	junction_5	11.4357120549654	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCACAACCAGACTGTT	NA	False	NA	-12	True	AATAAA	-16	NA	128060442	127938368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043_127944236_128011128_128011209_128060344
ENSMUSG00000030352.16_6	chr6	-	2306	1	ISM	ENSMUSG00000030352.16	ENSMUST00000112173.8	3819	8	179852	10	3106	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCACAACCAGACTGTT	NA	False	NA	-12	True	AATAAA	-16	NA	127940674	127938368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_127938400_127940700
ENSMUSG00000030353.16_2	chr6	-	2739	12	FSM	ENSMUSG00000030353.16	ENSMUST00000006311.13	3076	12	334	3	259	-3	multi-exon	FALSE	canonical	3	52	junction_4	17.0405447474327	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAACCGTGAGAACTTCAA	1691	False	NA	-10	True	NA	NA	NA	128277442	128204108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128224922_128225052_128228502_128228566_128228884_128228950_128247830_128248086_128277257
ENSMUSG00000030353.16_31	chr6	-	715	1	ISM	ENSMUSG00000030353.16	ENSMUST00000006311.13	3076	12	72956	0	47720	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGTGAGAACTTCAACTC	NA	False	NA	-7	True	NA	NA	NA	128204820	128204105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_128204100_128204800
ENSMUSG00000030353.16_6	chr6	-	5426	11	FSM	ENSMUSG00000030353.16	ENSMUST00000112157.4	1909	11	358	-3875	283	-18	multi-exon	TRUE	canonical	3	25	junction_7	24.4991836598692	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTCTGCTACAAACACAG	1715	False	NA	-22	True	NA	NA	NA	128277418	128201268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128228502_128228566_128228884_128228950_128247830_128248086_128277257
ENSMUSG00000030357.11_1	chr6	-	2183	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	23	11	23	-11	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	7188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAACAAAACCTGGGTGT	9292	False	NA	-32	True	AATAAA	-5	NA	128415617	128407076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
ENSMUSG00000030359.15_0	chr6	-	612	7	ISM	ENSMUSG00000030359.15	ENSMUST00000112132.8	4681	36	38817	7	-48	-7	3prime_fragment	FALSE	canonical	3	30	junction_1	17.1464281994822	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATCTGTGGGTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-13	NA	128464866	128460536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464843
ENSMUSG00000030359.15_1	chr6	-	651	7	NIC	ENSMUSG00000030359.15	novel	4681	36	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	1	3	junction_6	23.8799078725191	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATCTGTGGGTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-13	NA	128464818	128460536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464756
ENSMUSG00000030365.12_1	chr6	+	2358	6	FSM	ENSMUSG00000030365.12	ENSMUST00000032519.12	1014	6	-40	-1304	-40	0	multi-exon	FALSE	canonical	0	0	junction_2	0.489897948556636	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTGTACGGACTTCATT	NA	False	NA	NA	False	AATAAA	-27	NA	128864510	128875130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_128864630_128869790_128869862_128870578_128870705_128871631_128871811_128872289_128872397_128873374
ENSMUSG00000030374.16_0	chr7	+	3064	18	FSM	ENSMUSG00000030374.16	ENSMUST00000108495.9	3082	18	17	1	17	-1	multi-exon	FALSE	canonical	3	350	junction_8	55.9168933502007	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATAGGTTTTCCAGGCC	NA	False	NA	11	True	AATAAA	-11	NA	16550258	16574851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16550560_16556420_16556525_16556930_16557005_16558063_16558143_16560388_16560587_16562599_16562742_16564250_16564411_16564949_16565064_16565410_16565506_16566850_16567027_16567102_16567151_16567799_16567922_16571486_16571658_16571773_16571915_16572194_16572294_16572487_16572575_16573665_16573898_16574130
ENSMUSG00000030374.16_4	chr7	+	3083	18	FSM	ENSMUSG00000030374.16	ENSMUST00000019220.16	3535	18	445	7	17	-3	multi-exon	FALSE	canonical	3	94	junction_8	104.795467294144	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGATAGGTTTTCCAGG	NA	False	NA	9	True	AATAAA	-9	NA	16550258	16574849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16550560_16556420_16556525_16556930_16557005_16558063_16558143_16560388_16560587_16562599_16562742_16564250_16564411_16564949_16565064_16565389_16565506_16566850_16567027_16567102_16567151_16567799_16567922_16571486_16571658_16571773_16571915_16572194_16572294_16572487_16572575_16573665_16573898_16574130
ENSMUSG00000030380.18_0	chr7	-	1240	1	ISM	ENSMUSG00000030380.18	ENSMUST00000069289.15	3597	7	10376	846	7992	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGCACATTTCTTCTGC	2328	False	NA	NA	False	AATAAA	-17	NA	12778315	12777075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_12777100_12778300
ENSMUSG00000030380.18_2	chr7	-	2523	6	FSM	ENSMUSG00000030380.18	ENSMUST00000182515.8	3340	6	19	798	19	10	multi-exon	FALSE	canonical	2	4	junction_5	2.63818119165458	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTCCCCAACCTGCACA	NA	False	NA	NA	False	AATAAA	-7	NA	12788573	12777085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12778628_12785417_12785539_12785659_12785731_12786109_12786294_12786669_12787109_12788407
ENSMUSG00000030382.16_0	chr7	-	2296	10	FSM	ENSMUSG00000030382.16	ENSMUST00000032539.14	2288	10	-14	6	-14	0	multi-exon	TRUE	canonical	1	1	junction_2	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAGTCTGTGTGTGGAT	NA	False	NA	NA	False	AATAAA	-14	NA	12732091	12722278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12722580_12722659_12722791_12722936_12723035_12723280_12723480_12724893_12724985_12725071_12725267_12727241_12727367_12728806_12728966_12730157_12730368_12731304
ENSMUSG00000030386.20_0	chr7	+	4020	7	FSM	ENSMUSG00000030386.20	ENSMUST00000098822.10	4748	7	46	682	-24	0	multi-exon	FALSE	canonical	3	94	junction_4	11.513277359447	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAATGGAAACCTGGTTA	NA	False	NA	12	True	AATAAA	-16	NA	12212265	12229480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12223496_12223624_12223875_12223972_12226283
ENSMUSG00000030386.20_1	chr7	+	4093	8	FSM	ENSMUSG00000030386.20	ENSMUST00000151933.2	4069	8	-33	9	25	0	multi-exon	FALSE	canonical	2	2	junction_5	49.3550237295753	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAATGGAAACCTGGTTA	NA	False	NA	12	True	AATAAA	-16	NA	12212256	12229480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12215044_12215109_12223496_12223624_12223875_12223972_12226283
ENSMUSG00000030386.20_10	chr7	+	2656	1	ISM	ENSMUSG00000030386.20	ENSMUST00000098822.10	4748	7	14605	682	3385	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAATGGAAACCTGGTTA	NA	False	NA	12	True	AATAAA	-16	NA	12226824	12229480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_12226800_12229500
ENSMUSG00000030386.20_2	chr7	+	2287	4	FSM	ENSMUSG00000030386.20	ENSMUST00000123589.8	3509	4	34	1188	-24	-1188	multi-exon	FALSE	canonical	3	113	junction_3	4.98887651569859	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGTATTTTGCCTGCATG	NA	False	NA	NA	False	AATAAA	-19	NA	12212265	12216640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861
ENSMUSG00000030386.20_7	chr7	+	2185	5	ISM	ENSMUSG00000030386.20	ENSMUST00000151933.2	4069	8	-16	12852	-16	-1191	5prime_fragment	FALSE	canonical	2	4	junction_4	49.6959505392542	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGGGTATTTTGCCTGC	NA	False	NA	NA	False	AATAAA	-16	NA	12212273	12216637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12215044
ENSMUSG00000030393.9_0	chr7	-	3025	1	ISM	ENSMUSG00000030393.9	ENSMUST00000032551.8	4199	4	5141	0	5141	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAATATGTATTAAGACTT	NA	False	NA	-6	True	NA	NA	NA	10224180	10221155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_10221200_10224200
ENSMUSG00000030393.9_2	chr7	-	4189	4	FSM	ENSMUSG00000030393.9	ENSMUST00000032551.8	4199	4	10	0	10	0	multi-exon	TRUE	canonical	3	55	junction_1	5.43650214343336	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAATATGTATTAAGACTT	NA	False	NA	-6	True	NA	NA	NA	10229311	10221155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_10224936_10226205_10226333_10228416_10228456_10229068
ENSMUSG00000030397.12_1	chr7	-	3543	17	FSM	ENSMUSG00000030397.12	ENSMUST00000085715.7	3886	17	10	333	10	0	multi-exon	FALSE	canonical	3	72	junction_16	12.0219525764328	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAGAGACGTACAGAGT	NA	False	NA	-9	True	AATAAA	-44	NA	19192736	19159032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19160337_19161998_19162044_19163250_19163530_19165693_19165798_19167243_19167462_19168481_19168642_19168736_19168847_19170862_19170963_19171323_19171444_19177041_19177279_19179033_19179091_19181105_19181177_19181606_19181673_19182350_19182400_19182529_19182584_19185480_19185682_19192368
ENSMUSG00000030397.12_12	chr7	-	2187	7	ISM	ENSMUSG00000030397.12	ENSMUST00000209058.2	3561	18	23907	0	-6436	0	3prime_fragment	FALSE	canonical	3	89	junction_5	8.44590630621328	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAGAGACGTACAGAGT	857	False	NA	-9	True	AATAAA	-44	NA	19168813	19159032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19160337_19161998_19162044_19163250_19163530_19165693_19165798_19167243_19167462_19168481_19168642_19168736
ENSMUSG00000030397.12_4	chr7	-	3121	16	ISM	ENSMUSG00000030397.12	ENSMUST00000209058.2	3561	18	7095	-2	34	2	3prime_fragment	FALSE	canonical	3	85	junction_7	10.333548384859	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAGACGTACAGAGTCC	NA	False	NA	-7	True	NA	NA	NA	19185625	19159030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19160337_19161998_19162044_19163250_19163530_19165693_19165798_19167243_19167462_19168481_19168642_19168736_19168847_19170862_19170963_19171323_19171444_19177041_19177279_19179033_19179091_19181105_19181177_19181606_19181673_19182350_19182400_19182529_19182584_19185480
ENSMUSG00000030397.12_8	chr7	-	3618	18	FSM	ENSMUSG00000030397.12	ENSMUST00000239292.2	3966	18	15	333	-11	0	multi-exon	TRUE	canonical	2	4	junction_2	31.7309188501163	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAGAGACGTACAGAGT	NA	False	NA	-9	True	AATAAA	-44	NA	19192731	19159032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19160337_19161998_19162044_19163030_19163111_19163250_19163530_19165693_19165798_19167243_19167462_19168481_19168642_19168736_19168847_19170862_19170963_19171323_19171444_19177041_19177279_19179033_19179091_19181105_19181177_19181606_19181673_19182350_19182400_19182529_19182584_19185480_19185682_19192368
ENSMUSG00000030400.18_1	chr7	+	3557	23	FSM	ENSMUSG00000030400.18	ENSMUST00000062831.16	3578	23	18	3	-3	-1	multi-exon	TRUE	canonical	3	88	junction_1	20.1272809394744	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGGGTTTGCTTCTGA	NA	False	NA	10	True	AATAAA	-18	NA	19115952	19129616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_19115985_19116203_19116304_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754_19119872_19120631_19120756_19120856_19120954_19121037_19121172_19121253_19121423_19122064_19122184_19124031_19124102_19124173_19124244_19124323_19124426_19125451_19125516_19125889_19126012_19127173_19127267_19127357_19127431_19127554_19127626_19127700_19127845_19127963_19128108_19128276
ENSMUSG00000030400.18_13	chr7	+	3524	22	ISM	ENSMUSG00000030400.18	ENSMUST00000062831.16	3578	23	269	4	10	-2	3prime_fragment	FALSE	canonical	3	111	junction_10	16.2438894843024	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACTGGGGTTTGCTTCTG	NA	False	NA	9	True	AATAAA	-17	NA	19116203	19129615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_19116304_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754_19119872_19120631_19120756_19120856_19120954_19121037_19121172_19121253_19121423_19122064_19122184_19124031_19124102_19124173_19124244_19124323_19124426_19125451_19125516_19125889_19126012_19127173_19127267_19127357_19127431_19127554_19127626_19127700_19127845_19127963_19128108_19128276
ENSMUSG00000030400.18_5	chr7	+	3463	22	NIC	ENSMUSG00000030400.18	novel	3578	23	NA	NA	4	-1	intron_retention	TRUE	canonical	2	2	junction_1	34.8788639062727	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGGGTTTGCTTCTGA	NA	False	NA	10	True	AATAAA	-18	NA	19115946	19129616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_19115985_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754_19119872_19120631_19120756_19120856_19120954_19121037_19121172_19121253_19121423_19122064_19122184_19124031_19124102_19124173_19124244_19124323_19124426_19125451_19125516_19125889_19126012_19127173_19127267_19127357_19127431_19127554_19127626_19127700_19127845_19127963_19128108_19128276
ENSMUSG00000030401.17_0	chr7	+	1943	10	FSM	ENSMUSG00000030401.17	ENSMUST00000032559.17	1990	10	39	8	28	-8	multi-exon	FALSE	canonical	3	51	junction_4	11.5662343819316	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCACTGCATTCTGTG	NA	False	NA	4	True	AATAAA	-12	NA	19016587	19030077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_19016791_19020459_19020505_19020607_19021079_19021171_19021436_19027000_19027209_19027527_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
ENSMUSG00000030401.17_1	chr7	+	2504	8	NIC	ENSMUSG00000030401.17	novel	1990	10	NA	NA	3	-8	intron_retention	FALSE	canonical	3	51	junction_4	8.10139821643304	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCACTGCATTCTGTG	NA	False	NA	4	True	AATAAA	-12	NA	19016551	19030077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_19016791_19020459_19020505_19020607_19021079_19021171_19021436_19027000_19027667_19027772_19027843_19028343_19028391_19029375
ENSMUSG00000030402.6_3	chr7	-	1445	5	FSM	ENSMUSG00000030402.6	ENSMUST00000032560.6	1648	5	202	1	202	-1	multi-exon	FALSE	canonical	3	13	junction_1	5.35607132140714	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCCTTTCTTCGTTGTTG	9757	False	NA	0	True	AATAAA	-16	NA	19013787	19010730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19011135_19011874_19011936_19012009_19012116_19012194_19012313_19013031
ENSMUSG00000030402.6_4	chr7	-	2134	4	ISM	ENSMUSG00000030402.6	ENSMUST00000032560.6	1648	5	226	7	226	-7	intron_retention	FALSE	canonical	3	13	junction_1	6.12825877028341	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCATTCCCTTTCTTCG	9781	False	NA	-6	True	AATAAA	-10	NA	19013763	19010736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19011135_19011874_19011936_19012009_19012116_19012194
ENSMUSG00000030403.10_0	chr7	-	2203	13	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	-9	at_least_one_novel_splicesite	TRUE	canonical	3	243	junction_7	341.113250988583	298	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAAAGGTCTCTGGAG	NA	False	NA	NA	False	AATAAA	-15	NA	19005742	18990862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994604_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ENSMUSG00000030403.10_2	chr7	-	2206	13	FSM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	0	9	0	-9	multi-exon	FALSE	canonical	3	1236	junction_9	117.461666323765	1643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAAAGGTCTCTGGAG	NA	False	NA	NA	False	AATAAA	-15	NA	19005742	18990862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ENSMUSG00000030407.3_0	chr7	-	2692	7	NNC	ENSMUSG00000030407.3	novel	2710	7	NA	NA	55	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	18.7794213613377	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAATAAAATG	7259	False	NA	NA	False	ATTAAA	-28	NA	18883161	18873588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_18875225_18877110_18877228_18878584_18878685_18878808_18878962_18880794_18881077_18882300_18882444_18882900
ENSMUSG00000030407.3_1	chr7	-	2698	7	FSM	ENSMUSG00000030407.3	ENSMUST00000032566.3	2710	7	50	-38	50	38	multi-exon	FALSE	canonical	3	40	junction_4	5.82380173655205	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAATAAAATG	7254	False	NA	NA	False	ATTAAA	-28	NA	18883166	18873588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_18875225_18877110_18877228_18878584_18878685_18878808_18878962_18880794_18881077_18882300_18882445_18882900
ENSMUSG00000030407.3_4	chr7	-	2724	7	NNC	ENSMUSG00000030407.3	novel	2710	7	NA	NA	80	58	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_5	17.0855689594074	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAACAGGCTTCCAA	7284	False	NA	NA	False	NA	NA	NA	18883136	18873568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_18875225_18877110_18877228_18878584_18878685_18878808_18878962_18880794_18881113_18882300_18882445_18882900
ENSMUSG00000030407.3_5	chr7	-	802	1	Genic_Genomic	ENSMUSG00000030407.3	novel	NA	NA	NA	NA	7063	38	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAATAAAATG	NA	False	NA	NA	False	ATTAAA	-28	NA	18874390	18873588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_18873600_18874400
ENSMUSG00000030409.17_16	chr7	+	2040	3	NIC	ENSMUSG00000030409.17	novel	757	8	NA	NA	-115	-1	intron_retention	FALSE	canonical	1	1	junction_1	10	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCCGCGCAATATCTCT	NA	False	NA	16	True	AATAAA	-19	NA	18825292	18827743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_18825770_18825863_18826558_18826874
ENSMUSG00000030410.17_0	chr7	+	2395	4	FSM	ENSMUSG00000030410.17	ENSMUST00000108479.2	2388	4	-8	1	-8	0	multi-exon	FALSE	canonical	3	165	junction_3	77.0757203447796	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTCTGTTCCCTGG	NA	False	NA	13	True	ACTAAA	-13	NA	18810174	18816700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18810627_18811979_18812163_18813966_18815227_18816200
ENSMUSG00000030410.17_1	chr7	+	2469	5	FSM	ENSMUSG00000030410.17	ENSMUST00000032570.14	2494	5	24	1	-7	0	multi-exon	FALSE	canonical	3	219	junction_3	47.1858029496161	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTCTGTTCCCTGG	NA	False	NA	13	True	ACTAAA	-13	NA	18810175	18816700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18810627_18811979_18812163_18813966_18815227_18815843_18815919_18816200
ENSMUSG00000030410.17_10	chr7	+	3817	4	FSM	ENSMUSG00000030410.17	ENSMUST00000146429.2	2080	4	-1737	0	-2	0	multi-exon	FALSE	canonical	3	219	junction_2	52.8288641642889	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTCTGTTCCCTGG	NA	False	NA	13	True	ACTAAA	-13	NA	18810180	18816700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18812163_18813966_18815227_18815843_18815919_18816200
ENSMUSG00000030410.17_5	chr7	+	3373	3	ISM	ENSMUSG00000030410.17	ENSMUST00000108479.2	2388	4	-12	1	-12	0	intron_retention	FALSE	canonical	3	302	junction_1	22	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTCTGTTCCCTGG	NA	False	NA	13	True	ACTAAA	-13	NA	18810170	18816700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_18810627_18811979_18812163_18813966
ENSMUSG00000030410.17_9	chr7	+	3741	3	NIC	ENSMUSG00000030410.17	novel	2080	4	NA	NA	-1	0	intron_retention	FALSE	canonical	3	165	junction_2	90.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTCTGTTCCCTGG	NA	False	NA	13	True	ACTAAA	-13	NA	18810181	18816700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_18812163_18813966_18815227_18816200
ENSMUSG00000030411.17_0	chr7	+	2003	4	FSM	ENSMUSG00000030411.17	ENSMUST00000032571.10	8372	4	2	6367	2	-6367	multi-exon	TRUE	canonical	1	1	junction_1	1.4142135623731	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCTCTTTCTTTCCCTC	NA	False	NA	3	True	AATAGA	-13	NA	18659814	18692877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18660090_18676140_18676285_18684377_18684545_18691460
ENSMUSG00000030411.17_1	chr7	+	1468	1	ISM	ENSMUSG00000030411.17	ENSMUST00000032571.10	8372	4	34704	3260	34704	-3260	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAGAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	18694516	18695984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_18694500_18696000
ENSMUSG00000030413.8_0	chr7	+	702	3	FSM	ENSMUSG00000030413.8	ENSMUST00000032573.8	694	3	-11	3	-11	-3	multi-exon	FALSE	canonical	3	241	junction_2	21	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATGCTCCCTCCGGTGA	NA	False	NA	3	True	AATAAA	-12	NA	18618593	18624363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18618899_18623202_18623325_18624088
ENSMUSG00000030417.16_2	chr7	-	601	6	FSM	ENSMUSG00000030417.16	ENSMUST00000118501.8	684	6	48	35	-7	-1	multi-exon	FALSE	canonical	3	1740	junction_2	86.0883267348135	338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTTTGGGTGTTTCAG	NA	False	NA	NA	False	AATAAA	-17	NA	35346898	35341441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35345568_35345607_35346730
ENSMUSG00000030421.10_0	chr7	-	3419	11	FSM	ENSMUSG00000030421.10	ENSMUST00000085513.6	3441	11	13	9	-7	-8	multi-exon	FALSE	canonical	3	853	junction_5	45.4049556766659	1455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACTTATTTTGAGCCTG	NA	False	NA	-14	True	ATTAAA	-15	NA	37718954	37659425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_37661123_37661890_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030_37669123_37681035_37681172_37682294_37682374_37696111_37696147_37718534
ENSMUSG00000030421.10_7	chr7	-	3382	10	NIC	ENSMUSG00000030421.10	novel	2453	12	NA	NA	-5	-8	combination_of_known_splicesites	FALSE	canonical	3	145	junction_9	251.968251968378	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACTTATTTTGAGCCTG	NA	False	NA	-14	True	ATTAAA	-15	NA	37718952	37659425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_37661123_37661890_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030_37669123_37681035_37681172_37682294_37682374_37718534
ENSMUSG00000030421.10_9	chr7	-	3323	11	NIC	ENSMUSG00000030421.10	novel	2453	12	NA	NA	-5	-8	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	265.936383370159	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACTTATTTTGAGCCTG	NA	False	NA	-14	True	ATTAAA	-15	NA	37718952	37659425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_37661029_37661890_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030_37669123_37681035_37681172_37682294_37682374_37696111_37696147_37718534
ENSMUSG00000030423.8_0	chr7	-	1213	7	FSM	ENSMUSG00000030423.8	ENSMUST00000032585.8	2113	7	72	828	-2	-828	multi-exon	FALSE	canonical	3	243	junction_2	18.1567251085284	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCATAAATGGCTTCAAAT	NA	False	NA	-13	True	AATAAA	-11	NA	37970775	37962247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37968325_37968379_37970570
ENSMUSG00000030423.8_12	chr7	-	2274	7	NIC	ENSMUSG00000030423.8	novel	2113	7	NA	NA	1	-828	intron_retention	TRUE	canonical	3	24	junction_5	91.4706996195442	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCATAAATGGCTTCAAAT	NA	False	NA	-13	True	AATAAA	-11	NA	37970772	37962247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37968084_37968325_37968379_37970570
ENSMUSG00000030423.8_5	chr7	-	1265	8	NIC	ENSMUSG00000030423.8	novel	2113	7	NA	NA	1	-828	combination_of_known_junctions	FALSE	canonical	2	9	junction_5	113.432709532289	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCATAAATGGCTTCAAAT	NA	False	NA	-13	True	AATAAA	-11	NA	37970772	37962247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37968028_37968084_37968325_37968379_37970570
ENSMUSG00000030428.17_0	chr7	+	2485	14	FSM	ENSMUSG00000030428.17	ENSMUST00000129423.8	4355	14	15	1855	-8	-96	multi-exon	FALSE	canonical	3	27	junction_13	14.7692307692308	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTCAAAAAGCTTCTATTA	308	False	NA	NA	False	CATAAA	-4	NA	4122546	4137852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_4122780_4125475_4125655_4127618_4127731_4128521_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661_4136738_4136864
ENSMUSG00000030428.17_1	chr7	+	2460	14	FSM	ENSMUSG00000030428.17	ENSMUST00000119661.8	2512	14	18	34	-8	-17	multi-exon	FALSE	canonical	3	26	junction_13	14.8917196323819	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAAACAAATAAACAAA	308	False	NA	NA	False	NA	NA	NA	4122546	4138312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_4122780_4125475_4125655_4127618_4127731_4128521_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661_4136738_4137349
ENSMUSG00000030428.17_10	chr7	+	1950	11	ISM	ENSMUSG00000030428.17	ENSMUST00000134536.8	2649	13	3383	71	-135	3	3prime_fragment	FALSE	canonical	3	26	junction_10	14.1509716980849	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATGCTTACATGTGAGA	6292	False	NA	NA	False	NA	NA	NA	4128530	4138335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661_4136738_4137349
ENSMUSG00000030428.17_11	chr7	+	2376	11	ISM	ENSMUSG00000030428.17	ENSMUST00000206869.2	1491	13	1068	-1063	-110	-28	3prime_fragment	FALSE	canonical	3	27	junction_10	13.9513440212762	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAATAATAAACAAAAC	6317	False	NA	NA	False	NA	NA	NA	4128555	4138301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661_4136738_4136864
ENSMUSG00000030428.17_12	chr7	+	2477	10	ISM	ENSMUSG00000030428.17	ENSMUST00000206869.2	1491	13	1107	-1076	-71	-15	intron_retention	FALSE	canonical	3	41	junction_6	11.0554159678513	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAACAAATAAACAAACA	6356	False	NA	NA	False	NA	NA	NA	4128594	4138314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661
ENSMUSG00000030428.17_6	chr7	+	2674	12	ISM	ENSMUSG00000030428.17	ENSMUST00000032594.13	2713	14	3651	1091	-1084	0	3prime_fragment	FALSE	canonical	3	27	junction_11	14.3365682812396	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGCAGCTAGGTCCTTCT	4165	False	NA	3	True	AATAAA	-18	NA	4126403	4137238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_4127731_4128521_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661_4136738_4136864
ENSMUSG00000030431.9_0	chr7	-	665	2	FSM	ENSMUSG00000030431.9	ENSMUST00000168578.3	1375	2	94	616	94	-1	multi-exon	FALSE	canonical	3	322	junction_1	0	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGTGCTTGCCTGTCTGG	256	False	NA	-7	True	GATAAA	-15	NA	4792561	4788171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4788279_4792003
ENSMUSG00000030432.13_0	chr7	+	497	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	91	518	-25	-14	multi-exon	FALSE	canonical	3	3938	junction_1	1160.31525888441	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGCCTCCAAAATGTTTT	2784	False	NA	3	True	AATAAA	-18	NA	4795963	4797547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
ENSMUSG00000030432.13_1	chr7	+	789	4	FSM	ENSMUSG00000030432.13	ENSMUST00000078432.5	772	4	4	-21	4	-15	multi-exon	FALSE	canonical	3	6459	junction_1	109.515092820832	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGGCCTCCAAAATGTTT	2813	False	NA	2	True	AATAAA	-17	NA	4795992	4797546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_4796409_4796501_4796626_4797062_4797182_4797416
ENSMUSG00000030435.17_0	chr7	+	2098	12	FSM	ENSMUSG00000030435.17	ENSMUST00000005041.15	2183	12	79	6	-23	0	multi-exon	FALSE	canonical	3	1559	junction_7	130.155406157663	1936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATGGATCCTCATCTG	12	False	NA	27	True	ATTAAA	-17	NA	5065220	5082931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
ENSMUSG00000030435.17_3	chr7	+	2110	12	FSM	ENSMUSG00000030435.17	ENSMUST00000209099.2	2088	12	-23	1	-23	0	multi-exon	FALSE	canonical	0	0	junction_10	525.567461915969	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATGGATCCTCATCTG	12	False	NA	27	True	ATTAAA	-17	NA	5065220	5082931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078239_5078466_5078716_5082180
ENSMUSG00000030443.17_18	chr7	-	2020	5	FSM	ENSMUSG00000030443.17	ENSMUST00000135435.2	577	5	-74	-1369	0	1369	multi-exon	FALSE	canonical	2	5	junction_1	9.23309265630969	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAGTACAAACCATCAG	NA	False	NA	NA	False	NA	NA	NA	6334277	6324825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_6326423_6326645_6326742_6328451_6328579_6332253_6332316_6334139
ENSMUSG00000030443.17_7	chr7	-	2527	5	NIC	ENSMUSG00000030443.17	novel	2550	5	NA	NA	9	-10	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	10.1827059272082	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACCAAGAAGAGTTGATTA	NA	False	NA	NA	False	AATAAA	-12	NA	6334268	6318668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_6320779_6326645_6326745_6328451_6328579_6332253_6332316_6334139
ENSMUSG00000030443.17_8	chr7	-	2529	5	FSM	ENSMUSG00000030443.17	ENSMUST00000062765.14	2550	5	11	10	4	-10	multi-exon	FALSE	canonical	3	15	junction_1	5.61248608016091	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACCAAGAAGAGTTGATTA	NA	False	NA	NA	False	AATAAA	-12	NA	6334273	6318668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_6320779_6326645_6326742_6328451_6328579_6332253_6332316_6334139
ENSMUSG00000030446.18_0	chr13	+	2986	4	FSM	ENSMUSG00000030446.18	ENSMUST00000181391.8	2399	4	77	-664	1	664	multi-exon	FALSE	canonical	3	9	junction_1	7.58653778449403	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTTGTATTTTACATCA	NA	False	NA	NA	False	AATAAA	-15	NA	67961935	67975785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_67962016_67970359_67970487_67971218_67971315_67973102
ENSMUSG00000030446.18_3	chr13	+	1752	1	Genic_Genomic	ENSMUSG00000030446.18	novel	NA	NA	NA	NA	11441	6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGTATTGCATTCTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	67973375	67975127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_67973400_67975100
ENSMUSG00000030446.18_6	chr13	+	2289	4	FSM	ENSMUSG00000030446.18	ENSMUST00000012725.8	2277	4	-14	2	-10	-2	multi-exon	FALSE	canonical	2	2	junction_1	10.2089285540757	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATGTGTGATTAGTATT	NA	False	NA	NA	False	AATAAA	-12	NA	67961920	67975116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_67962016_67970402_67970487_67971218_67971315_67973102
ENSMUSG00000030447.16_0	chr7	+	4330	31	FSM	ENSMUSG00000030447.16	ENSMUST00000032629.16	6440	31	202	1908	18	196	multi-exon	FALSE	canonical	3	493	junction_19	46.6292707308284	1102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTGCGTTTGTTCA	NA	False	NA	7	True	AATAAA	-10	NA	55492020	55580442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
ENSMUSG00000030447.16_10	chr7	+	4310	31	FSM	ENSMUSG00000030447.16	ENSMUST00000085255.11	4195	31	76	-191	27	191	multi-exon	FALSE	canonical	3	23	junction_15	147.013453654948	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGAGTCTGTTTGCGTTT	NA	False	NA	2	True	AATAAA	-5	NA	55492029	55580437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547572_55547721_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
ENSMUSG00000030447.16_58	chr7	+	4290	30	ISM	ENSMUSG00000030447.16	ENSMUST00000163845.4	4178	32	29601	-215	-3	188	3prime_fragment	FALSE	canonical	3	493	junction_18	45.2812324466838	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATGGAGTCTGTTTGCG	NA	False	NA	-1	True	AATAAA	-2	NA	55521603	55580434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
ENSMUSG00000030447.16_77	chr7	+	3096	20	ISM	ENSMUSG00000030447.16	ENSMUST00000163845.4	4178	32	49804	-205	-4686	178	3prime_fragment	FALSE	canonical	3	493	junction_8	45.6108433431231	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAAAAATTAATGGAG	NA	False	NA	-11	True	AGTAAA	-44	NA	55541806	55580424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
ENSMUSG00000030451.17_0	chr7	+	2475	15	ISM	ENSMUSG00000030451.17	ENSMUST00000076226.13	15250	93	-111	127653	-54	-10577	5prime_fragment	TRUE	canonical	2	10	junction_12	4.19487053143601	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATTTAACTTTTAATT	NA	False	NA	NA	False	AATAAA	-19	NA	55699889	55753895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55700051_55700603_55700697_55717731_55717847_55722040_55722179_55734736_55734957_55737087_55737189_55738004_55738162_55740662_55740774_55742286_55742459_55744012_55744187_55747124_55747314_55748082_55748235_55749826_55749985_55750075_55750190_55753475
ENSMUSG00000030451.17_14	chr7	+	6300	37	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	130725	-31	23384	-6	3prime_fragment	FALSE	canonical	3	23	junction_2	14.0954637655322	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	NA	False	NA	1	True	AATAAA	-10	NA	55830861	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55830929_55832152_55832235_55832327_55832472_55833689_55833781_55834053_55834232_55834373_55834456_55834540_55834713_55835582_55835728_55838308_55838535_55839551_55839724_55840914_55841102_55841541_55841683_55843957_55844150_55846803_55846958_55851848_55851957_55853523_55853656_55854133_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_16	chr7	+	5953	34	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	133607	-31	26266	-6	3prime_fragment	FALSE	canonical	3	32	junction_7	13.0422777957307	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	NA	False	NA	1	True	AATAAA	-10	NA	55833743	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55833781_55834053_55834232_55834373_55834456_55834540_55834713_55835582_55835728_55838308_55838535_55839551_55839724_55840914_55841102_55841541_55841683_55843957_55844150_55846803_55846958_55851848_55851957_55853523_55853656_55854133_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_20	chr7	+	5721	32	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	134254	-31	26913	-6	3prime_fragment	FALSE	canonical	3	32	junction_5	13.0600151545727	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	NA	False	NA	1	True	AATAAA	-10	NA	55834390	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55834456_55834540_55834713_55835582_55835728_55838308_55838535_55839551_55839724_55840914_55841102_55841541_55841683_55843957_55844150_55846803_55846958_55851848_55851957_55853523_55853656_55854133_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_21	chr7	+	5559	31	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	134501	-31	27160	-6	3prime_fragment	FALSE	canonical	3	32	junction_4	12.79240225898	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	NA	False	NA	1	True	AATAAA	-10	NA	55834637	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55834713_55835582_55835728_55838308_55838535_55839551_55839724_55840914_55841102_55841541_55841683_55843957_55844150_55846803_55846958_55851848_55851957_55853523_55853656_55854133_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_22	chr7	+	5404	30	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	135526	-31	28185	-6	3prime_fragment	FALSE	canonical	3	32	junction_3	12.8198901644583	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	NA	False	NA	1	True	AATAAA	-10	NA	55835662	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55835728_55838308_55838535_55839551_55839724_55840914_55841102_55841541_55841683_55843957_55844150_55846803_55846958_55851848_55851957_55853523_55853656_55854133_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_23	chr7	+	5295	29	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	138216	-31	30875	-6	3prime_fragment	FALSE	canonical	3	32	junction_2	13.0325338585983	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	NA	False	NA	1	True	AATAAA	-10	NA	55838352	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55838535_55839551_55839724_55840914_55841102_55841541_55841683_55843957_55844150_55846803_55846958_55851848_55851957_55853523_55853656_55854133_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_29	chr7	+	4126	24	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	146735	196	-23376	-196	3prime_fragment	FALSE	canonical	3	36	junction_2	12.489693293405	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACATTAAATTATTATTT	4502	False	NA	NA	False	ATTAAA	-8	NA	55846871	55881315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55846958_55851848_55851957_55853523_55853656_55854133_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_30	chr7	+	4076	22	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	153470	-31	-16641	-6	3prime_fragment	FALSE	canonical	3	39	junction_3	11.6766720944717	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	525	False	NA	1	True	AATAAA	-10	NA	55853606	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55853656_55854133_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_31	chr7	+	3976	21	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	154048	-31	-16063	-6	3prime_fragment	FALSE	canonical	3	39	junction_2	11.4737744443579	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	1103	False	NA	1	True	AATAAA	-10	NA	55854184	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_32	chr7	+	3806	20	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	154307	-31	-15804	-6	3prime_fragment	FALSE	canonical	3	39	junction_1	11.1086300707991	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	1362	False	NA	1	True	AATAAA	-10	NA	55854443	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_34	chr7	+	2892	15	ISM	ENSMUSG00000030451.17	ENSMUST00000205303.2	14403	91	156850	-437	-12773	-194	3prime_fragment	FALSE	canonical	3	42	junction_2	10.507528884819	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTAAATTATTATTTCT	4393	False	NA	NA	False	ATTAAA	-10	NA	55857474	55881317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_36	chr7	+	2658	13	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	163154	-31	-6957	-6	3prime_fragment	FALSE	canonical	3	51	junction_2	9.15112318546502	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	NA	False	NA	1	True	AATAAA	-10	NA	55863290	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_40	chr7	+	1851	7	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	176174	-31	6063	-6	3prime_fragment	FALSE	canonical	3	55	junction_1	10.4509436043939	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	NA	False	NA	1	True	AATAAA	-10	NA	55876310	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_43	chr7	+	513	1	ISM	ENSMUSG00000030451.17	ENSMUST00000076226.13	15250	93	180804	231	10557	-194	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTAAATTATTATTTCT	NA	False	NA	NA	False	ATTAAA	-10	NA	55880804	55881317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55880800_55881300
ENSMUSG00000030451.17_58	chr7	+	3007	16	ISM	ENSMUSG00000030451.17	ENSMUST00000205303.2	14403	91	155921	-388	-13702	-243	3prime_fragment	FALSE	canonical	3	42	junction_3	10.2558384455988	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTTCAACTAATTTTA	3464	False	NA	NA	False	NA	NA	NA	55856545	55881268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_60	chr7	+	2334	12	ISM	ENSMUSG00000030451.17	ENSMUST00000205303.2	14403	91	164520	-443	-5103	-188	3prime_fragment	FALSE	canonical	3	51	junction_1	9.33047968968742	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATTATTTCTTCAATG	NA	False	NA	NA	False	ATTAAA	-16	NA	55865144	55881323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030451.17_62	chr7	+	1922	8	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	172578	-31	2467	-6	3prime_fragment	FALSE	canonical	3	55	junction_2	10.0407333661746	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	NA	False	NA	1	True	AATAAA	-10	NA	55872714	55881542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
ENSMUSG00000030452.17_0	chr7	-	3169	7	FSM	ENSMUSG00000030452.17	ENSMUST00000032635.14	3197	7	28	0	2	0	multi-exon	FALSE	canonical	3	165	junction_5	25.3837218179946	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612196	55581034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611947
ENSMUSG00000030452.17_1	chr7	-	1759	1	ISM	ENSMUSG00000030452.17	ENSMUST00000119041.8	2979	7	29200	0	5023	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55582793	55581034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_55581000_55582800
ENSMUSG00000030452.17_2	chr7	-	2857	6	NIC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_5	84.7924524943111	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612201	55581034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55612143
ENSMUSG00000030452.17_4	chr7	-	2975	7	NIC	ENSMUSG00000030452.17	novel	3925	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	69.789564644962	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612198	55581034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
ENSMUSG00000030452.17_5	chr7	-	3048	6	FSM	ENSMUSG00000030452.17	ENSMUST00000117812.8	3039	6	-9	0	2	0	multi-exon	FALSE	canonical	3	17	junction_5	82.412620392753	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612196	55581034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611947
ENSMUSG00000030469.11_0	chr7	+	3163	3	FSM	ENSMUSG00000030469.11	ENSMUST00000205769.2	596	3	-95	-2472	-86	-1188	multi-exon	FALSE	canonical	0	0	junction_1	14	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATGCCTGGCTGGATAGT	7181	False	NA	-1	True	NA	NA	NA	43228947	43241471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43229191_43235777_43235905_43238678
ENSMUSG00000030469.11_1	chr7	+	3203	4	FSM	ENSMUSG00000030469.11	ENSMUST00000058104.8	4494	4	103	1188	74	-1188	multi-exon	FALSE	canonical	3	26	junction_1	1.24721912892465	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATGCCTGGCTGGATAGT	7370	False	NA	-1	True	NA	NA	NA	43229136	43241471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43229191_43233491_43233721_43235777_43235905_43238678
ENSMUSG00000030469.11_10	chr7	+	1626	1	ISM	ENSMUSG00000030469.11	ENSMUST00000058104.8	4494	4	10809	1191	10780	-1191	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGTATGCCTGGCTGGAT	NA	False	NA	-4	True	NA	NA	NA	43239842	43241468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43239800_43241500
ENSMUSG00000030469.11_9	chr7	+	3151	3	ISM	ENSMUSG00000030469.11	ENSMUST00000058104.8	4494	4	4456	1188	4427	-1188	3prime_fragment	FALSE	canonical	3	28	junction_2	0.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATGCCTGGCTGGATAGT	NA	False	NA	-1	True	NA	NA	NA	43233489	43241471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43233721_43235777_43235905_43238678
ENSMUSG00000030471.18_0	chr7	+	2367	17	FSM	ENSMUSG00000030471.18	ENSMUST00000118927.8	2410	17	37	6	8	-6	multi-exon	FALSE	canonical	3	240	junction_5	25.4348893009189	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAGACTTAGTTTCTAA	NA	False	NA	3	True	AATAAA	-14	NA	48438787	48477182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_48438886_48445648_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
ENSMUSG00000030471.18_1	chr7	+	2363	17	NIC	ENSMUSG00000030471.18	novel	2410	17	NA	NA	7	-6	combination_of_known_junctions	TRUE	canonical	3	42	junction_1	63.8620339090449	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAGACTTAGTTTCTAA	NA	False	NA	3	True	AATAAA	-14	NA	48438786	48477182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_48438886_48445653_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
ENSMUSG00000030486.10_0	chr7	+	2577	4	NNC	ENSMUSG00000030486.10	novel	2562	4	NA	NA	-60	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	2.05480466765633	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATGCTAACATTTTATA	NA	False	NA	NA	False	NA	NA	NA	23954158	23961865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_23954238_23955257_23955316_23957877_23958005_23959552
ENSMUSG00000030491.17_0	chr7	-	6136	31	NIC	ENSMUSG00000030491.17	novel	3651	30	NA	NA	5	2151	combination_of_known_junctions	FALSE	canonical	3	17	junction_19	212.327472446586	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACAGTTTCTTGTTCTGT	NA	False	NA	-6	True	AATAAA	-18	NA	35237113	35166371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_35168618_35169090_35169158_35169241_35169396_35169477_35169592_35169681_35169746_35170616_35170727_35175357_35175531_35177478_35177572_35179565_35179777_35180441_35180630_35182464_35182565_35184629_35184851_35185024_35185165_35185844_35185963_35186578_35186708_35186956_35187149_35188061_35188190_35188623_35188781_35189354_35189541_35193254_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
ENSMUSG00000030491.17_38	chr7	-	1559	12	FSM	ENSMUSG00000030491.17	ENSMUST00000032701.14	1620	12	42	19	-10	10	multi-exon	FALSE	canonical	3	378	junction_6	48.0311538018523	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGCAGAATTCTTGCTT	NA	False	NA	-32	True	AATAAA	-14	NA	35237128	35193055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
ENSMUSG00000030493.14_0	chr7	-	1665	4	FSM	ENSMUSG00000030493.14	ENSMUST00000032704.12	1857	4	29	163	29	-10	multi-exon	FALSE	canonical	3	143	junction_2	4.92160768674447	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAGCAAAAGAAAAA	NA	False	NA	NA	False	AAGAAA	-44	NA	35096232	35091739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637
ENSMUSG00000030493.14_1	chr7	-	1322	5	FSM	ENSMUSG00000030493.14	ENSMUST00000154597.2	831	5	-100	-391	28	0	multi-exon	TRUE	canonical	3	12	junction_4	59.3316947339278	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAGAAAAATTA	NA	False	NA	NA	False	AATAAA	-4	NA	35096233	35091729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637_35095757_35096110
ENSMUSG00000030493.14_3	chr7	-	190	1	ISM	ENSMUSG00000030493.14	ENSMUST00000032704.12	1857	4	4342	153	4214	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAGAAAAATTA	NA	False	NA	NA	False	AATAAA	-4	NA	35091919	35091729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_35091700_35091900
ENSMUSG00000030494.14_0	chr7	+	3354	15	FSM	ENSMUSG00000030494.14	ENSMUST00000032705.13	3508	15	146	8	-14	-4	multi-exon	FALSE	canonical	3	83	junction_1	11.3992928531124	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTAATTTTTCTTTTTTCT	NA	False	NA	18	True	AATAAA	-18	NA	35033740	35091706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
ENSMUSG00000030494.14_15	chr7	+	3342	15	NNC	ENSMUSG00000030494.14	novel	689	2	NA	NA	19219	-4	intron_retention	FALSE	canonical	3	27	junction_1	23.30422139214	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTAATTTTTCTTTTTTCT	NA	False	NA	18	True	AATAAA	-18	NA	35052973	35091706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_35053058_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
ENSMUSG00000030498.16_1	chr7	+	2716	10	NIC	ENSMUSG00000030498.16	novel	1857	10	NA	NA	4	-1	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	14.8980071581387	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCACACATTATTTGTCTC	609	False	NA	0	True	ATTAAA	-17	NA	51511766	51644200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_51512394_51513745_51513842_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
ENSMUSG00000030498.16_13	chr7	+	2499	10	NIC	ENSMUSG00000030498.16	novel	3158	10	NA	NA	14	-7	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	19.956124713487	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAACCCACACATTATT	619	False	NA	-6	True	ATTAAA	-11	NA	51511776	51644194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_51512193_51513745_51513842_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
ENSMUSG00000030498.16_14	chr7	+	4208	9	NIC	ENSMUSG00000030498.16	novel	3158	10	NA	NA	-142	-7	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	10.7927927340425	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAACCCACACATTATT	463	False	NA	-6	True	ATTAAA	-11	NA	51511620	51644194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_51513842_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
ENSMUSG00000030498.16_2	chr7	+	2414	9	NIC	ENSMUSG00000030498.16	novel	3158	10	NA	NA	3	-7	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	19.2142525225417	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAACCCACACATTATT	608	False	NA	-6	True	ATTAAA	-11	NA	51511765	51644194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_51512193_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
ENSMUSG00000030498.16_3	chr7	+	2613	9	NIC	ENSMUSG00000030498.16	novel	3158	10	NA	NA	4	-8	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	15.4008928312614	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAACCCACACATTAT	609	False	NA	-7	True	ATTAAA	-10	NA	51511766	51644193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_51512394_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
ENSMUSG00000030499.10_0	chr7	-	2360	7	FSM	ENSMUSG00000030499.10	ENSMUST00000108069.8	2407	7	37	10	28	-5	multi-exon	TRUE	canonical	3	15	junction_6	8.78761755097605	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAAAAGACTGAGGCTC	6836	False	NA	-21	True	CATAAA	-10	NA	34353786	34338448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_34339875_34341232_34341539_34344262_34344408_34349380_34349557_34350171_34350265_34352008_34352108_34353671
ENSMUSG00000030499.10_10	chr7	-	4153	5	Fusion	ENSMUSG00000108723.2_ENSMUSG00000030499.10	novel	2407	7	NA	NA	-2	-5	multi-exon	FALSE	canonical	0	0	junction_3	15.4434452114805	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAACTCCTCTGTGTTGTG	6797	False	NA	NA	False	AATAAA	-16	NA	34353825	34336425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_-_34339875_34341232_34341539_34344262_34344408_34352008_34352108_34353671
ENSMUSG00000030499.10_11	chr7	-	1153	1	ISM	ENSMUSG00000030499.10	ENSMUST00000108069.8	2407	7	14222	10	8568	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAAAAGACTGAGGCTC	NA	False	NA	-21	True	CATAAA	-10	NA	34339601	34338448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_34338400_34339600
ENSMUSG00000030499.10_4	chr7	-	1594	2	ISM	ENSMUSG00000030499.10	ENSMUST00000205419.2	743	4	6767	-1156	6767	-7	3prime_fragment	FALSE	canonical	3	42	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGCAAAAGACTGAGGC	NA	False	NA	-23	True	CATAAA	-8	NA	34341402	34338450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_34339875_34341232
ENSMUSG00000030499.10_7	chr7	-	3357	6	FSM	ENSMUSG00000030499.10	ENSMUST00000108070.9	2409	6	-959	11	-484	-7	multi-exon	FALSE	canonical	3	27	junction_2	6.01996677731696	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGCAAAAGACTGAGGC	7401	False	NA	-23	True	CATAAA	-8	NA	34353221	34338450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_34339875_34341232_34341539_34344262_34344408_34349380_34349557_34350171_34350265_34352008
ENSMUSG00000030499.10_8	chr7	-	1872	3	ISM	ENSMUSG00000030499.10	ENSMUST00000205419.2	743	4	3772	-1163	3772	0	3prime_fragment	FALSE	canonical	3	27	junction_2	7.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACTGAGGCTCCGTCC	NA	False	NA	-16	True	TATAAA	-3	NA	34344397	34338443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_34339875_34341232_34341539_34344262
ENSMUSG00000030499.10_9	chr7	-	2288	7	NNC	ENSMUSG00000030499.10	novel	2407	7	NA	NA	302	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	13.6065752079239	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGCAAAAGACTGAGGC	5990	False	NA	-23	True	CATAAA	-8	NA	34354632	34338450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_34339875_34341232_34341539_34344262_34344408_34349380_34349557_34350171_34350265_34352008_34352108_34354587
ENSMUSG00000030505.18_3	chr7	+	2473	16	FSM	ENSMUSG00000030505.18	ENSMUST00000032715.13	2507	16	20	14	20	-14	multi-exon	FALSE	canonical	3	379	junction_1	68.5528506579656	720	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTCTGCATCACACTG	NA	False	NA	30	True	AATAAA	-14	NA	49428113	49507999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_49428250_49428328_49428462_49430056_49430140_49430868_49430919_49431689_49431793_49435814_49435975_49436980_49437123_49441720_49441787_49448053_49448176_49456274_49456375_49467779_49467859_49476455_49476644_49478691_49478779_49498242_49498294_49498484_49498573_49507114
ENSMUSG00000030509.18_0	chr7	-	1957	1	ISM	ENSMUSG00000030509.18	ENSMUST00000131320.8	4484	6	42355	8	8495	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATACTGAATTTGT	NA	False	NA	-10	True	ATTAAA	-24	NA	66296277	66294320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_66294300_66296300
ENSMUSG00000030509.18_1	chr7	-	4977	7	NIC	ENSMUSG00000030509.18	novel	4928	6	NA	NA	-17	-8	intron_retention	FALSE	canonical	3	29	junction_2	17.1407571465077	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATACTGAATTTGT	NA	False	NA	-10	True	ATTAAA	-24	NA	66339312	66294320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_66297674_66309397_66310004_66327904_66327994_66328827_66329090_66331452_66331557_66338570_66338669_66338847
ENSMUSG00000030509.18_11	chr7	-	2171	5	NIC	ENSMUSG00000030509.18	novel	2137	6	NA	NA	11	-2	intron_retention	FALSE	canonical	3	50	junction_1	11.9687092035858	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACTTTGTTCATCTTAGT	NA	False	NA	NA	False	AATAAA	-24	NA	66339333	66326772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_66327994_66328827_66329090_66331452_66331557_66338570_66338669_66338847
ENSMUSG00000030509.18_2	chr7	-	4861	6	FSM	ENSMUSG00000030509.18	ENSMUST00000124899.8	4928	6	58	9	9	-9	multi-exon	FALSE	canonical	3	23	junction_2	20.3273215156351	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAATACTGAATTTG	NA	False	NA	-11	True	ATTAAA	-23	NA	66339286	66294321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_66297674_66309397_66310004_66328827_66329090_66331452_66331557_66338570_66338669_66338847
ENSMUSG00000030509.18_3	chr7	-	4325	6	NIC	ENSMUSG00000030509.18	novel	4928	6	NA	NA	-3	-8	intron_retention	FALSE	canonical	1	1	junction_1	28.6733325583198	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATACTGAATTTGT	NA	False	NA	-10	True	ATTAAA	-24	NA	66339266	66294320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_66297674_66327904_66327994_66328827_66329090_66331452_66331557_66338570_66338669_66338847
ENSMUSG00000030509.18_5	chr7	-	5008	8	NIC	ENSMUSG00000030509.18	novel	4928	6	NA	NA	-5	-8	intron_retention	FALSE	canonical	3	10	junction_5	27.0539898600362	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATACTGAATTTGT	NA	False	NA	-10	True	ATTAAA	-24	NA	66339268	66294320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_66297674_66309397_66310004_66327904_66327994_66328827_66329090_66331452_66331557_66337631_66337707_66338570_66338669_66338847
ENSMUSG00000030509.18_6	chr7	-	3616	2	ISM	ENSMUSG00000030509.18	ENSMUST00000131320.8	4484	6	28972	8	-4888	-8	3prime_fragment	FALSE	canonical	3	62	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATACTGAATTTGT	NA	False	NA	-10	True	ATTAAA	-24	NA	66309660	66294320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_66297674_66309397
ENSMUSG00000030509.18_7	chr7	-	4937	7	NIC	ENSMUSG00000030509.18	novel	4928	6	NA	NA	9	-8	intron_retention	FALSE	canonical	3	10	junction_4	29.7587522139846	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATACTGAATTTGT	NA	False	NA	-10	True	ATTAAA	-24	NA	66339286	66294320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_66297674_66309397_66310004_66328827_66329090_66331452_66331557_66337631_66337707_66338570_66338669_66338847
ENSMUSG00000030510.12_0	chr7	+	3197	12	Fusion	ENSMUSG00000053091.17_ENSMUSG00000030510.12	novel	1159	10	NA	NA	-4	-6	multi-exon	FALSE	canonical	0	0	junction_2	24.2759616503567	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCACAGTGTATGGTGA	NA	False	NA	NA	False	AATAAA	-10	NA	66339701	66473433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_+_66339772_66345923_66346055_66413922_66414097_66423337_66423453_66429298_66429418_66431541_66431600_66433149_66433201_66434524_66434618_66435759_66435889_66439336_66439444_66445533_66445688_66471437
ENSMUSG00000030510.12_2	chr7	+	3192	11	FSM	ENSMUSG00000030510.12	ENSMUST00000066475.11	3250	11	58	0	58	0	multi-exon	FALSE	canonical	0	0	junction_1	1.48660687473185	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGTATGGTGACTGAGT	NA	False	NA	NA	False	AATAAA	-16	NA	66393309	66473439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_66393500_66413922_66414097_66423337_66423453_66429298_66429418_66431541_66431600_66433149_66433201_66434524_66434618_66435759_66435889_66439336_66439444_66445533_66445688_66471437
ENSMUSG00000030512.14_0	chr7	+	1025	9	FSM	ENSMUSG00000030512.14	ENSMUST00000153609.8	1248	9	216	7	-10	0	multi-exon	FALSE	canonical	3	2395	junction_6	274.913622798144	1086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710301	65724328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65719866_65719947_65720337_65720414_65720979_65721074_65724069
ENSMUSG00000030512.14_2	chr7	+	2008	7	NIC	ENSMUSG00000030512.14	novel	955	8	NA	NA	-10	0	intron_retention	FALSE	canonical	3	2772	junction_5	192.939253537365	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710301	65724328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65720414_65720979_65721074_65724069
ENSMUSG00000030512.14_3	chr7	+	945	8	FSM	ENSMUSG00000030512.14	ENSMUST00000032723.9	955	8	10	0	-10	0	multi-exon	FALSE	canonical	3	89	junction_5	1022.69418095299	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710301	65724328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65720337_65720414_65720979_65721074_65724069
ENSMUSG00000030513.15_3	chr7	+	4210	21	FSM	ENSMUSG00000030513.15	ENSMUST00000098391.11	4207	21	-2	-1	-2	1	multi-exon	FALSE	canonical	3	46	junction_14	34.1808060174128	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCAAAGGGGCTTGTATT	NA	False	NA	10	True	AATAAA	-15	NA	65511881	65700083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_65512192_65559949_65560055_65576941_65577047_65577563_65577708_65578854_65578932_65581424_65581514_65602666_65602840_65608844_65609058_65612651_65612753_65618715_65618820_65620289_65620408_65629894_65630084_65633460_65633598_65674975_65675156_65681496_65681600_65683497_65683695_65684928_65685017_65688728_65688833_65693262_65693393_65697304_65697418_65698653
ENSMUSG00000030513.15_4	chr7	+	4250	22	FSM	ENSMUSG00000030513.15	ENSMUST00000055576.12	4405	22	104	51	-3	1	multi-exon	FALSE	canonical	3	127	junction_4	20.9878487682365	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCAAAGGGGCTTGTATT	NA	False	NA	10	True	AATAAA	-15	NA	65511880	65700083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_65512192_65559949_65560055_65576941_65577047_65577563_65577708_65578854_65578932_65581424_65581514_65602666_65602840_65608844_65609058_65612651_65612753_65618715_65618820_65620289_65620408_65629894_65630084_65633460_65633598_65674975_65675156_65675313_65675353_65681496_65681600_65683497_65683695_65684928_65685017_65688728_65688833_65693262_65693393_65697304_65697418_65698653
ENSMUSG00000030515.10_0	chr7	+	3186	19	FSM	ENSMUSG00000030515.10	ENSMUST00000032728.9	3192	19	3	3	3	-3	multi-exon	FALSE	canonical	3	56	junction_9	7.60035736651675	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCTCGGTATGTTCCAT	NA	False	NA	8	True	AATAAA	-21	NA	65294648	65341836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_65294963_65296000_65296070_65297225_65297417_65302007_65302132_65305431_65305554_65308607_65308726_65310866_65310932_65312048_65312128_65313620_65313768_65314628_65314728_65325711_65325879_65327743_65327907_65332514_65332653_65333555_65333634_65333809_65333911_65336185_65336291_65338626_65338700_65339715_65339831_65340918
ENSMUSG00000030515.10_1	chr7	+	1819	11	ISM	ENSMUSG00000030515.10	ENSMUST00000126941.2	2709	13	2	7361	2	-7361	5prime_fragment	FALSE	canonical	3	56	junction_9	8.96437393240599	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGTTTAATTCCTACATA	NA	False	NA	NA	False	AATATA	-11	NA	65294647	65326201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_65294963_65296000_65296070_65297225_65297417_65302007_65302132_65305431_65305554_65308607_65308726_65310866_65310932_65312048_65312128_65313620_65313768_65314628_65314728_65325711
ENSMUSG00000030516.15_0	chr7	-	6871	28	NIC	ENSMUSG00000030516.15	novel	6102	27	NA	NA	-89	-8	intron_retention	FALSE	canonical	1	4	junction_26	48.3012097023518	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACAGTATTAGTTTGG	NA	False	NA	NA	False	AATAAA	-8	NA	65177618	64945920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_64947416_64949417_64949562_64950813_64951032_64952491_64952967_64956117_64956285_64960751_64960980_64962081_64962180_64962302_64963173_64964406_64964758_64967734_64967836_64968111_64968323_64968997_64969081_64972027_64972124_64972241_64972427_64972702_64972923_64973736_64973846_64976009_64976161_64978671_64978778_64979373_64979514_64985779_64985928_64986244_64986414_64986790_64986895_64989897_64990175_64992364_64992468_64993362_64993488_65004579_65004637_65162946_65163080_65177311
ENSMUSG00000030516.15_1	chr7	-	6882	27	FSM	ENSMUSG00000030516.15	ENSMUST00000032729.8	6102	27	-245	-535	-21	-8	multi-exon	FALSE	canonical	3	136	junction_1	23.0143060730422	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACAGTATTAGTTTGG	NA	False	NA	NA	False	AATAAA	-8	NA	65021008	64945920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_64947416_64949417_64949562_64950813_64951032_64952491_64952967_64956117_64956285_64960751_64960980_64962081_64962180_64962302_64963173_64964406_64964758_64967734_64967836_64968111_64968323_64968997_64969081_64972027_64972124_64972241_64972427_64972702_64972923_64973736_64973846_64976009_64976161_64978671_64978778_64979373_64979514_64985779_64985928_64986244_64986414_64986790_64986895_64989897_64990175_64992364_64992468_64993362_64993488_65004579_65004637_65020557
ENSMUSG00000030516.15_2	chr7	-	3436	8	ISM	ENSMUSG00000030516.15	ENSMUST00000032729.8	6102	27	57850	-535	-10860	-8	3prime_fragment	FALSE	canonical	3	136	junction_1	24.6096048944558	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACAGTATTAGTTTGG	NA	False	NA	NA	False	AATAAA	-8	NA	64962913	64945920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_64947416_64949417_64949562_64950813_64951032_64952491_64952967_64956117_64956285_64960751_64960980_64962081_64962180_64962302
ENSMUSG00000030516.15_3	chr7	-	6836	27	NIC	ENSMUSG00000030516.15	novel	5938	28	NA	NA	-14	-8	intron_retention	FALSE	canonical	3	35	junction_1	34.2514198729572	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACAGTATTAGTTTGG	NA	False	NA	NA	False	AATAAA	-8	NA	65021001	64945920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_64947416_64949456_64949562_64950813_64951032_64952491_64952967_64956117_64956285_64960751_64960980_64962081_64962180_64962302_64963173_64964406_64964758_64967734_64967836_64968111_64968323_64968997_64969081_64972027_64972124_64972241_64972427_64972702_64972923_64973736_64973846_64976009_64976161_64978671_64978778_64979373_64979514_64985779_64985928_64986244_64986414_64986790_64986895_64989897_64990175_64992364_64992468_64993362_64993488_65004579_65004637_65020557
ENSMUSG00000030516.15_9	chr7	-	6825	27	NIC	ENSMUSG00000030516.15	novel	7049	28	NA	NA	-24	-8	intron_retention	FALSE	canonical	3	43	junction_1	33.0858664117024	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACAGTATTAGTTTGG	NA	False	NA	NA	False	AATAAA	-8	NA	65021011	64945920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_64947416_64949477_64949562_64950813_64951032_64952491_64952967_64956117_64956285_64960751_64960980_64962081_64962180_64962302_64963173_64964406_64964758_64967734_64967836_64968111_64968323_64968997_64969081_64972027_64972124_64972241_64972427_64972702_64972923_64973736_64973846_64976009_64976161_64978671_64978778_64979373_64979514_64985779_64985928_64986244_64986414_64986790_64986895_64989897_64990175_64992364_64992468_64993362_64993488_65004579_65004637_65020557
ENSMUSG00000030518.18_0	chr7	-	2130	1	Genic_Genomic	ENSMUSG00000030518.18	novel	NA	NA	NA	NA	15436	4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGGGACTAAGAGGGTC	NA	False	NA	NA	False	AATAAA	-24	NA	64407964	64405834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_64405800_64408000
ENSMUSG00000030518.18_1	chr7	-	4758	10	FSM	ENSMUSG00000030518.18	ENSMUST00000119118.8	4801	10	47	-4	47	4	multi-exon	FALSE	canonical	0	0	junction_8	2.62936879248872	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGGGACTAAGAGGGTC	NA	False	NA	NA	False	AATAAA	-24	NA	64806271	64405834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_64409162_64411500_64411729_64417399_64417476_64425451_64425588_64426460_64426622_64436437_64436546_64469512_64469648_64505856_64505968_64633128_64633186_64805852
ENSMUSG00000030521.12_1	chr7	-	2152	11	FSM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	46	50	14	-50	multi-exon	FALSE	canonical	3	635	junction_4	61.7421250039226	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTTCCTGTTGTTTT	NA	False	NA	-1	True	AATAAA	-19	NA	64041970	64026324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
ENSMUSG00000030521.12_11	chr7	-	1688	10	ISM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	2484	50	2452	-50	3prime_fragment	FALSE	canonical	3	635	junction_4	64.9474621483101	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTTCCTGTTGTTTT	NA	False	NA	-1	True	AATAAA	-19	NA	64039532	64026324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194
ENSMUSG00000030522.15_0	chr7	+	4793	16	FSM	ENSMUSG00000030522.15	ENSMUST00000032736.11	5205	16	11	401	11	-401	multi-exon	FALSE	canonical	3	34	junction_5	5.98739416515139	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGTCGTCACCAGTAT	738	False	NA	7	True	AATAAA	-17	NA	63937428	63990153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_63937590_63938086_63938148_63947207_63947345_63949286_63949360_63950287_63950431_63957875_63957967_63963831_63964013_63967838_63967927_63968006_63968096_63969162_63969294_63970312_63970383_63970910_63970982_63976399_63976570_63983059_63983231_63986459_63986643_63987180
ENSMUSG00000030522.15_21	chr7	+	2704	1	ISM	ENSMUSG00000030522.15	ENSMUST00000032736.11	5205	16	50034	399	37071	-399	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTCGTCACCAGTATGA	NA	False	NA	9	True	AATAAA	-19	NA	63987451	63990155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_63987500_63990200
ENSMUSG00000030523.19_1	chr7	+	1997	11	NIC	ENSMUSG00000030523.19	novel	2575	11	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	301.433309373732	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGACTGAGTTTTCAGA	NA	False	NA	25	True	ATTAAA	-22	NA	63835208	63861174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUSG00000030523.19_2	chr7	+	1908	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	83	1	5	-1	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGACTGAGTTTTCAGA	NA	False	NA	25	True	ATTAAA	-22	NA	63835211	63861174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUSG00000030523.19_3	chr7	+	2851	14	FSM	ENSMUSG00000030523.19	ENSMUST00000177102.8	2928	14	2	75	2	-3	multi-exon	FALSE	canonical	3	45	junction_13	349.928648686554	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACCAAAATCTTAGATGAA	NA	False	NA	10	True	AATAAA	-15	NA	63835208	63874509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237_63867409_63868855_63868991_63869989_63870041_63873438
ENSMUSG00000030523.19_5	chr7	+	2659	11	FSM	ENSMUSG00000030523.19	ENSMUST00000205731.2	2575	11	-88	4	8	-4	multi-exon	FALSE	canonical	3	82	junction_10	225.867682504603	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACGCCTGGCTCTTTGAC	NA	False	NA	NA	False	NA	NA	NA	63835214	63868479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237
ENSMUSG00000030525.9_0	chr7	-	5124	8	NIC	ENSMUSG00000030525.9	novel	2078	10	NA	NA	-15	3130	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	5.90053612230382	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATTACTGTTGTCTGGA	NA	False	NA	-7	True	AATAAA	-21	NA	62862332	62745309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_62749491_62753527_62753638_62754725_62754813_62755751_62755947_62757299_62757468_62760144_62760225_62861855_62861996_62862169
ENSMUSG00000030525.9_2	chr7	-	5221	10	FSM	ENSMUSG00000030525.9	ENSMUST00000032738.7	2078	10	-22	-3121	-22	3121	multi-exon	FALSE	canonical	3	9	junction_2	5.31478255248951	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCTCTCAACTATTACTG	NA	False	NA	-16	True	AATAAA	-12	NA	62862283	62745318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_62749491_62753527_62753638_62754725_62754813_62755751_62755947_62757299_62757468_62760144_62760225_62798330_62798441_62809284_62809330_62861855_62861996_62862169
ENSMUSG00000030525.9_8	chr7	-	5188	11	NNC	ENSMUSG00000030525.9	novel	2078	10	NA	NA	8	3122	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7.26704891960966	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTCTCAACTATTACTGT	NA	False	NA	-15	True	AATAAA	-13	NA	62862309	62745317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_62747993_62748052_62749491_62753527_62753638_62754725_62754813_62755751_62755947_62757299_62757468_62760144_62760225_62798330_62798441_62809284_62809330_62861855_62861996_62862169
ENSMUSG00000030527.16_0	chr7	-	5107	15	FSM	ENSMUSG00000030527.16	ENSMUST00000122255.8	5115	15	-6	14	-6	-14	multi-exon	TRUE	canonical	0	0	junction_3	5.85757838102026	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGTATCTGCTCTCGG	1591	False	NA	NA	False	ATTAAA	-12	NA	80338631	80236388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80239700_80240109_80240213_80242263_80242345_80242425_80242627_80245357_80245657_80248494_80248713_80254098_80254149_80255495_80255582_80259644_80259681_80266212_80266314_80268341_80268405_80270269_80270332_80279367_80279488_80327093_80327193_80338354
ENSMUSG00000030527.16_1	chr7	-	2611	1	ISM	ENSMUSG00000030527.16	ENSMUST00000122255.8	5115	15	99632	8	9891	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATCTGCTCTCGGTGTTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	80238993	80236382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_80236400_80239000
ENSMUSG00000030528.13_2	chr7	-	4485	22	FSM	ENSMUSG00000030528.13	ENSMUST00000081314.11	4598	22	14	99	14	0	multi-exon	FALSE	canonical	3	335	junction_6	41.4509518092853	754	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTAGTGGCCATTGTTT	NA	False	NA	-33	True	AATAAA	-22	NA	80184853	80104839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80105185_80108560_80108745_80110477_80110601_80113520_80113714_80114485_80114686_80116522_80116662_80119337_80119529_80123776_80123973_80130082_80130244_80131151_80131259_80143849_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030_80152702_80152987_80153121_80155566_80155695_80159151_80159312_80162526_80163243_80164336_80164439_80184790
ENSMUSG00000030530.16_1	chr7	-	4312	16	FSM	ENSMUSG00000030530.16	ENSMUST00000122232.8	4286	16	-33	7	-33	-5	multi-exon	FALSE	canonical	3	55	junction_15	14.0469055508876	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAAGCCCGGTCTCCAG	3646	False	NA	-7	True	ATTAAA	-15	NA	80052543	80038948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80041045_80041255_80041367_80041475_80041601_80041934_80042115_80042217_80042336_80042421_80042526_80042631_80042733_80043156_80043370_80045082_80045256_80045707_80045797_80046676_80046754_80046869_80046999_80047645_80047742_80047842_80047942_80048341_80048677_80052277
ENSMUSG00000030530.16_2	chr7	-	1432	1	ISM	ENSMUSG00000030530.16	ENSMUST00000146771.2	5736	4	5726	611	5726	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCGGTCTCCAGTGTCT	NA	False	NA	-2	True	ATTAAA	-20	NA	80040375	80038943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_80038900_80040400
ENSMUSG00000030530.16_9	chr7	-	3214	9	ISM	ENSMUSG00000030530.16	ENSMUST00000120753.3	4332	16	6207	5	853	-5	3prime_fragment	FALSE	canonical	3	66	junction_8	12.6633082170498	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAAGCCCGGTCTCCAG	NA	False	NA	-7	True	ATTAAA	-15	NA	80045248	80038948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_80041045_80041255_80041367_80041475_80041601_80041934_80042115_80042217_80042336_80042421_80042526_80042631_80042733_80043156_80043370_80045082
ENSMUSG00000030532.7_0	chr7	+	860	4	FSM	ENSMUSG00000030532.7	ENSMUST00000032747.7	1510	4	35	615	-5	-3	multi-exon	FALSE	canonical	3	96	junction_1	13.490737563232	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGCTGTTCTTCCTTCT	NA	False	NA	14	True	AATAAA	-19	NA	79992886	79995847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79992998_79993286_79993343_79993463_79993705_79995395
ENSMUSG00000030532.7_10	chr7	+	633	2	ISM	ENSMUSG00000030532.7	ENSMUST00000206559.2	425	3	210	-334	-3	-3	3prime_fragment	FALSE	canonical	3	129	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGCTGTTCTTCCTTCT	NA	False	NA	14	True	AATAAA	-19	NA	79993523	79995847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79993705_79995395
ENSMUSG00000030532.7_11	chr7	+	275	1	ISM	ENSMUSG00000030532.7	ENSMUST00000032747.7	1510	4	2721	615	2046	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGCTGTTCTTCCTTCT	NA	False	NA	14	True	AATAAA	-19	NA	79995572	79995847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79995600_79995800
ENSMUSG00000030532.7_9	chr7	+	1064	4	NIC	ENSMUSG00000030532.7	novel	1510	4	NA	NA	-3	-3	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	53.8537113133554	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGCTGTTCTTCCTTCT	NA	False	NA	14	True	AATAAA	-19	NA	79992888	79995847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_79993204_79993286_79993343_79993463_79993705_79995395
ENSMUSG00000030533.17_1	chr7	-	3194	20	NIC	ENSMUSG00000030533.17	novel	3260	20	NA	NA	-1	-3	combination_of_known_junctions	FALSE	canonical	3	31	junction_19	16.1947975641576	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAAGCATCTGTTTGTT	NA	False	NA	NA	False	AATAAA	-9	NA	79989950	79975046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_79975626_79975760_79975917_79976056_79976175_79977330_79977447_79977665_79977780_79978200_79978268_79978440_79978569_79978769_79978911_79979253_79979396_79980085_79980181_79981300_79981602_79982724_79982897_79983767_79983939_79984442_79984612_79986053_79986222_79986672_79986766_79988588_79988765_79989061_79989099_79989298_79989461_79989861
ENSMUSG00000030533.17_2	chr7	-	3236	20	FSM	ENSMUSG00000030533.17	ENSMUST00000032748.15	3260	20	20	4	2	-3	multi-exon	TRUE	canonical	3	61	junction_19	11.9833679753749	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAAGCATCTGTTTGTT	NA	False	NA	NA	False	AATAAA	-9	NA	79989947	79975046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79975626_79975760_79975917_79976056_79976175_79977330_79977447_79977665_79977780_79978200_79978268_79978440_79978569_79978769_79978911_79979253_79979396_79980085_79980181_79981300_79981602_79982724_79982897_79983767_79983939_79984442_79984612_79986053_79986222_79986672_79986766_79988588_79988765_79989061_79989099_79989298_79989461_79989816
ENSMUSG00000030534.14_5	chr7	+	2548	23	FSM	ENSMUSG00000030534.14	ENSMUST00000032749.12	2574	23	22	4	-8	2	multi-exon	FALSE	canonical	3	97	junction_6	14.9188576657057	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTTTGTTTTTTGT	NA	False	NA	13	True	AATAAA	-17	NA	79919418	79941323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929766_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
ENSMUSG00000030534.14_9	chr7	+	2579	23	FSM	ENSMUSG00000030534.14	ENSMUST00000150585.8	2554	23	-23	-2	7	2	multi-exon	FALSE	canonical	3	10	junction_6	27.6695375058045	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTTTGTTTTTTGT	NA	False	NA	13	True	AATAAA	-17	NA	79919403	79941323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929782_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
ENSMUSG00000030536.11_1	chr7	-	7313	38	FSM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	125	6	-10	-6	multi-exon	FALSE	canonical	3	539	junction_37	55.7931586507513	986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTTGTGTTTATTTTTC	NA	False	NA	-15	True	AATAAA	-13	NA	80453039	80361336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80363694_80366758_80366868_80370616_80370740_80372709_80372877_80373526_80373740_80375334_80375423_80375713_80375850_80376486_80376590_80377700_80377834_80378596_80378830_80379816_80379902_80379989_80380131_80383733_80383959_80385221_80385386_80386009_80386166_80387861_80388071_80388420_80388491_80388580_80388653_80388742_80388827_80389537_80389709_80392783_80392927_80393540_80393709_80393865_80393957_80398571_80398736_80401073_80401199_80401616_80401778_80401937_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80452888
ENSMUSG00000030536.11_3	chr7	-	1726	1	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	90104	4	16936	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTGTTTATTTTTCTT	8427	False	NA	-13	True	AATAAA	-15	NA	80363060	80361334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_80361300_80363100
ENSMUSG00000030538.16_1	chr7	-	838	7	FSM	ENSMUSG00000030538.16	ENSMUST00000065163.15	1047	7	197	12	8	0	multi-exon	FALSE	canonical	3	721	junction_2	48.5546656414763	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2248	False	NA	-12	True	AATAAA	-15	NA	79882364	79876906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
ENSMUSG00000030538.16_3	chr7	-	799	6	NIC	ENSMUSG00000030538.16	novel	1047	7	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	305.980130073833	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2252	False	NA	-12	True	AATAAA	-15	NA	79882360	79876906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882257
ENSMUSG00000030538.16_5	chr7	-	2593	6	NIC	ENSMUSG00000030538.16	novel	772	7	NA	NA	-7	0	intron_retention	FALSE	canonical	3	721	junction_2	27.9814224084481	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2260	False	NA	-12	True	AATAAA	-15	NA	79882352	79876906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79880173_79882091_79882127_79882257
ENSMUSG00000030538.16_7	chr7	-	693	5	FSM	ENSMUSG00000030538.16	ENSMUST00000071457.12	702	5	9	0	9	0	multi-exon	FALSE	canonical	3	77	junction_4	297.709904941035	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2249	False	NA	-12	True	AATAAA	-15	NA	79882363	79876906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79882257
ENSMUSG00000030539.14_0	chr7	+	3783	15	FSM	ENSMUSG00000030539.14	ENSMUST00000032754.9	3949	15	35	131	-2	-15	multi-exon	FALSE	canonical	3	35	junction_1	17.3394972033593	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTTGTGGCCCACATT	NA	False	NA	13	True	AATAAA	-15	NA	79836623	79876144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79836740_79848266_79848519_79862543_79862708_79863010_79863074_79865371_79865471_79866076_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343
ENSMUSG00000030539.14_10	chr7	+	2254	7	ISM	ENSMUSG00000030539.14	ENSMUST00000205822.2	3760	14	20580	334	20485	-334	3prime_fragment	FALSE	canonical	3	56	junction_5	14.9740516301441	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACAGGCTTTCTCTGTGT	9547	False	NA	NA	False	NA	NA	NA	79868768	79875825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343
ENSMUSG00000030539.14_14	chr7	+	1387	1	ISM	ENSMUSG00000030539.14	ENSMUST00000032754.9	3949	15	38169	131	26474	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTTGTGGCCCACATT	5123	False	NA	13	True	AATAAA	-15	NA	79874757	79876144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79874800_79876100
ENSMUSG00000030539.14_4	chr7	+	3594	14	FSM	ENSMUSG00000030539.14	ENSMUST00000205822.2	3760	14	151	15	56	-15	multi-exon	FALSE	canonical	3	56	junction_5	14.4283580075107	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTTGTGGCCCACATT	5768	False	NA	13	True	AATAAA	-15	NA	79848339	79876144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79848519_79862543_79862708_79863010_79863074_79865371_79865471_79866076_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343
ENSMUSG00000030541.17_10	chr7	-	2346	9	NIC	ENSMUSG00000030541.17	novel	1790	11	NA	NA	13	0	intron_retention	FALSE	canonical	3	1616	junction_4	183.33980575696	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTCTTGATGTGTTT	NA	False	NA	-9	True	AAAAAG	-9	NA	79765067	79744597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
ENSMUSG00000030541.17_4	chr7	-	1668	11	FSM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	73	4	13	0	multi-exon	FALSE	canonical	3	1495	junction_5	201.26112391617	1734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTCTTGATGTGTTT	NA	False	NA	-9	True	AAAAAG	-9	NA	79765067	79744597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
ENSMUSG00000030543.11_0	chr7	+	1409	2	FSM	ENSMUSG00000030543.11	ENSMUST00000107394.3	1944	2	520	15	520	-15	multi-exon	FALSE	canonical	3	17	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAACCAACAAAAACTTGT	NA	False	NA	NA	False	ATTAAA	-6	NA	79460994	79463172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79461508_79462276
ENSMUSG00000030543.11_1	chr7	+	102	1	ISM	ENSMUSG00000030543.11	ENSMUST00000107394.3	1944	2	2594	17	2594	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAACCAACAAAAACTT	NA	False	NA	NA	False	ATTAAA	-4	NA	79463068	79463170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79463100_79463200
ENSMUSG00000030545.10_0	chr7	-	2225	3	FSM	ENSMUSG00000030545.10	ENSMUST00000032761.8	2241	3	13	3	13	-3	multi-exon	TRUE	canonical	3	20	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTCCTGCGTCTGTGAGT	NA	False	NA	NA	False	AATAAA	-15	NA	79392815	79385707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79387659_79389912_79390029_79392657
ENSMUSG00000030545.10_1	chr7	-	1660	1	FSM	ENSMUSG00000030545.10	ENSMUST00000205297.2	1475	1	1100	-1285	1100	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTGACTCCTGCGTCTG	674	False	NA	NA	False	AATAAA	-10	NA	79387372	79385712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79385700_79387400
ENSMUSG00000030549.7_0	chr7	-	1985	11	FSM	ENSMUSG00000030549.7	ENSMUST00000032766.5	2090	11	102	3	102	3	multi-exon	FALSE	canonical	2	10	junction_10	3.38969025133566	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGACTGGGGAGTGGATGT	NA	False	NA	NA	False	AATAAA	-18	NA	79267303	79243113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79243549_79244529_79244737_79248288_79248363_79248717_79248843_79249104_79249242_79249426_79249565_79250241_79250409_79251334_79251483_79253487_79253639_79257292_79257480_79267087
ENSMUSG00000030551.15_0	chr7	-	4042	3	FSM	ENSMUSG00000030551.15	ENSMUST00000032768.15	4222	3	174	6	174	-6	multi-exon	FALSE	canonical	1	1	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGACAGTCCCTGTTTTA	NA	False	NA	NA	False	ATTAAA	-24	NA	70010167	70001697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_70004680_70007510_70008039_70009635
ENSMUSG00000030554.17_0	chr7	-	6473	5	FSM	ENSMUSG00000030554.17	ENSMUST00000051389.10	6953	5	-29	509	-29	-509	multi-exon	FALSE	canonical	1	1	junction_1	2.69258240356725	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTGTATTGTTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	67409519	67380424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_67383302_67384207_67386655_67388852_67388924_67401551_67401677_67408566
ENSMUSG00000030554.17_1	chr7	-	4668	2	ISM	ENSMUSG00000030554.17	ENSMUST00000207102.2	3388	4	4855	-2584	4855	2	3prime_fragment	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTTCTCACTTGTGGG	NA	False	NA	NA	False	AATAAA	-15	NA	67385487	67379913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_67383302_67384207
ENSMUSG00000030555.17_0	chr7	+	2204	11	FSM	ENSMUSG00000030555.17	ENSMUST00000107471.8	2216	11	9	3	9	0	multi-exon	FALSE	canonical	3	46	junction_1	12.2429571591181	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCAGTTTGTGTGTTTG	NA	False	NA	10	True	AATAAA	-15	NA	67297181	67376321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_67297594_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
ENSMUSG00000030555.17_2	chr7	+	2253	12	NIC	ENSMUSG00000030555.17	novel	2492	12	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	27.3674113977112	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCAGTTTGTGTGTTTG	NA	False	NA	10	True	AATAAA	-15	NA	67297181	67376321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_67297594_67301670_67301720_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
ENSMUSG00000030555.17_5	chr7	+	2004	10	FSM	ENSMUSG00000030555.17	ENSMUST00000126093.8	1991	10	-16	3	9	0	multi-exon	TRUE	canonical	1	3	junction_1	24.6671671620895	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCAGTTTGTGTGTTTG	NA	False	NA	10	True	AATAAA	-15	NA	67297181	67376321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_67297594_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
ENSMUSG00000030556.14_0	chr7	-	1902	10	FSM	ENSMUSG00000030556.14	ENSMUST00000053950.10	2923	10	27	994	0	2	multi-exon	FALSE	canonical	3	32	junction_5	16.1894646431591	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAGAAAAAGAAGTTTTGA	599	False	NA	NA	False	ATTAAA	-22	NA	67294952	67164151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209813_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ENSMUSG00000030556.14_1	chr7	-	2719	9	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	2	10	junction_2	26.9162474167556	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGTCTTCTCTCCTCCTG	599	False	NA	-3	True	AATAAA	-15	NA	67294952	67163158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_67164927_67179333_67179494_67195113_67195217_67209605_67209813_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ENSMUSG00000030556.14_2	chr7	-	2800	10	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	41	junction_5	13.5026289164118	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGTGTCTTCTCTCCTCC	597	False	NA	-5	True	AATAAA	-13	NA	67294954	67163160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ENSMUSG00000030556.14_3	chr7	-	2719	9	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	20.648471493067	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGTCTTCTCTCCTCCTG	568	False	NA	-3	True	AATAAA	-15	NA	67294983	67163158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ENSMUSG00000030557.18_0	chr7	-	5393	11	FSM	ENSMUSG00000030557.18	ENSMUST00000107476.8	4759	11	30	-664	-1	-91	multi-exon	FALSE	canonical	3	36	junction_7	5.22015325445528	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAAATGGTTAAGACAAT	NA	False	NA	NA	False	AATAAA	-18	NA	67022576	66881001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404_66901593_66914612_66914673_66915690_66915911_66918016_66918149_66945122_66945327_66966539_66966731_66999616_66999670_67022460
ENSMUSG00000030557.18_1	chr7	-	5396	11	FSM	ENSMUSG00000030557.18	ENSMUST00000032776.15	2476	11	33	-2953	2	-91	multi-exon	FALSE	canonical	3	15	junction_6	11.6120626935958	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAAATGGTTAAGACAAT	NA	False	NA	NA	False	AATAAA	-18	NA	67022573	66881001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404_66901593_66914612_66914673_66915690_66915911_66917814_66917953_66945122_66945327_66966539_66966731_66999616_66999670_67022460
ENSMUSG00000030557.18_2	chr7	-	2003	1	ISM	ENSMUSG00000030557.18	ENSMUST00000156690.8	5538	12	139602	91	32906	-91	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAAATGGTTAAGACAAT	NA	False	NA	NA	False	AATAAA	-18	NA	66883004	66881001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_66881000_66883000
ENSMUSG00000030557.18_7	chr7	-	5366	11	FSM	ENSMUSG00000030557.18	ENSMUST00000076325.12	2664	11	33	-2735	2	-141	multi-exon	FALSE	canonical	3	7	junction_9	15.401623291069	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTGTTGTTTTTTCTTC	NA	False	NA	NA	False	AAGAAA	-26	NA	67022573	66881051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404_66901593_66914612_66914673_66915690_66915911_66917814_66917953_66945122_66945327_66966539_66966731_66999596_66999670_67022460
ENSMUSG00000030557.18_9	chr7	-	5346	11	NIC	ENSMUSG00000030557.18	novel	4759	11	NA	NA	5	-152	intron_retention	FALSE	canonical	3	7	junction_9	12.5713961038542	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTCCCTGAATGTGTT	NA	False	NA	NA	False	AAGAAA	-15	NA	67022570	66881062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404_66901593_66914612_66914673_66915690_66915911_66918016_66918149_66945122_66945327_66966539_66966731_66999596_66999670_67022460
ENSMUSG00000030559.9_0	chr7	+	1416	3	FSM	ENSMUSG00000030559.9	ENSMUST00000107256.4	1577	3	36	125	36	-125	multi-exon	FALSE	canonical	3	30	junction_1	4.5	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATGCTGTTTCCCTGTT	NA	False	NA	-7	True	AATAAA	-6	NA	88079516	88140655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_88079812_88099688_88099970_88139815
ENSMUSG00000030560.18_0	chr7	+	1863	7	FSM	ENSMUSG00000030560.18	ENSMUST00000032779.12	2493	7	51	579	-2	-579	multi-exon	FALSE	canonical	3	323	junction_5	18.6100331362771	451	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCATAGTCTTTCTATGT	NA	False	NA	10	True	AATAAA	-15	NA	87927343	87959517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_87927583_87930594_87930741_87946290_87946458_87948652_87948806_87951392_87951509_87957220_87957353_87958607
ENSMUSG00000030562.18_0	chr7	+	3567	16	NIC	ENSMUSG00000030562.18	novel	3753	18	NA	NA	-30	-20	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	4.17079795189788	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATATTAAAATTAAAA	NA	False	NA	NA	False	TATAAA	-25	NA	86895826	87047898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_86896111_86896695_86896792_86954045_86954144_86955936_86955965_86963271_86963345_86966438_86966520_86970753_86970971_86972840_86973006_86973140_86973204_86988164_86988226_87009935_87010018_87019225_87019346_87021126_87021236_87023561_87023631_87025389_87025491_87045978
ENSMUSG00000030562.18_1	chr7	+	3740	18	FSM	ENSMUSG00000030562.18	ENSMUST00000126887.8	3749	18	-11	20	-11	-20	multi-exon	FALSE	canonical	3	4	junction_2	3.42896273924463	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATATTAAAATTAAAA	NA	False	NA	NA	False	TATAAA	-25	NA	86895845	87047898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_86896111_86896695_86896792_86944995_86945103_86946662_86946748_86954045_86954144_86955936_86955965_86963271_86963345_86966438_86966520_86970753_86970971_86972840_86973006_86973140_86973204_86988164_86988226_87009935_87010018_87019225_87019346_87021126_87021236_87023561_87023631_87025389_87025491_87045978
ENSMUSG00000030562.18_3	chr7	+	3731	18	FSM	ENSMUSG00000030562.18	ENSMUST00000032781.14	3753	18	2	20	2	-20	multi-exon	FALSE	canonical	2	6	junction_2	3.12706679058871	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATATTAAAATTAAAA	NA	False	NA	NA	False	TATAAA	-25	NA	86895858	87047898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_86896111_86896695_86896792_86944991_86945103_86946662_86946748_86954045_86954144_86955936_86955965_86963271_86963345_86966438_86966520_86970753_86970971_86972840_86973006_86973140_86973204_86988164_86988226_87009935_87010018_87019225_87019346_87021126_87021236_87023561_87023631_87025389_87025491_87045978
ENSMUSG00000030562.18_4	chr7	+	3661	17	NIC	ENSMUSG00000030562.18	novel	3749	18	NA	NA	15	-10	combination_of_known_splicesites	FALSE	canonical	1	1	junction_10	4.58555817213128	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAAAATGGTGTCTGT	NA	False	NA	NA	False	AATAAA	-5	NA	86895871	87047908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_86896111_86896695_86896792_86944995_86945103_86946662_86946748_86954045_86954144_86955936_86955965_86963271_86963345_86966438_86966520_86970753_86970971_86972840_86973006_86988164_86988226_87009935_87010018_87019225_87019346_87021126_87021236_87023561_87023631_87025389_87025491_87045978
ENSMUSG00000030577.15_0	chr7	-	1160	4	ISM	ENSMUSG00000030577.15	ENSMUST00000189718.7	3672	13	10544	2	5514	-2	3prime_fragment	FALSE	canonical	2	5	junction_1	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTCCTTTGTATTGGTG	NA	False	NA	NA	False	ATTAAA	-19	NA	30567330	30565255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30566088_30566442_30566528_30566886_30567006_30567206
ENSMUSG00000030583.17_0	chr7	-	2984	8	NIC	ENSMUSG00000030583.17	novel	3697	10	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_5	17.8004815344176	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGCTGGTGTGTTCTCC	994	False	NA	-7	True	AATAAA	-11	NA	29041320	29019802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030970_29031649_29031816_29038380_29038603_29041243
ENSMUSG00000030583.17_1	chr7	-	7596	22	NIC	ENSMUSG00000030583.17	novel	7713	23	NA	NA	-26	-4	combination_of_known_junctions	FALSE	canonical	3	33	junction_11	9.24962461700774	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAAATGGCTGGTGTGTT	NA	False	NA	-11	True	AATAAA	-7	NA	29218011	29019806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030967_29031649_29031816_29038380_29038603_29047696_29048125_29050117_29050237_29053479_29053608_29063595_29063734_29065975_29066228_29070389_29070665_29076920_29077498_29082620_29082779_29085480_29085585_29086577_29086753_29087387_29087577_29096575_29096707_29098751_29100575_29134173_29134251_29217889
ENSMUSG00000030583.17_11	chr7	-	3068	9	NIC	ENSMUSG00000030583.17	novel	4321	14	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	24.1631822200636	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGCTGGTGTGTTCTCC	1006	False	NA	-7	True	AATAAA	-11	NA	29041308	29019802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030970_29031372_29031469_29031649_29031816_29038380_29038603_29041243
ENSMUSG00000030583.17_17	chr7	-	2407	5	ISM	ENSMUSG00000030583.17	ENSMUST00000182223.8	3697	10	22865	0	-2444	0	3prime_fragment	FALSE	canonical	3	51	junction_4	4.60298815988049	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGCTGGTGTGTTCTCC	NA	False	NA	-7	True	AATAAA	-11	NA	29030857	29019802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722
ENSMUSG00000030583.17_23	chr7	-	6589	20	NIC	ENSMUSG00000030583.17	novel	7713	23	NA	NA	-22596	-4	combination_of_known_junctions	FALSE	canonical	3	33	junction_11	8.91697624612521	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAAATGGCTGGTGTGTT	NA	False	NA	-11	True	AATAAA	-7	NA	29099766	29019806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030967_29031649_29031816_29038380_29038603_29047696_29048125_29050117_29050237_29053479_29053608_29063595_29063734_29065975_29066228_29070389_29070665_29076920_29077498_29082620_29082779_29085480_29085585_29086577_29086753_29087387_29087577_29096575_29096707_29098751
ENSMUSG00000030583.17_3	chr7	-	7669	23	NIC	ENSMUSG00000030583.17	novel	7713	23	NA	NA	-1	0	combination_of_known_junctions	TRUE	canonical	2	3	junction_5	15.2732683886825	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGCTGGTGTGTTCTCC	NA	False	NA	-7	True	AATAAA	-11	NA	29217981	29019802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030970_29031372_29031469_29031649_29031816_29038380_29038603_29047696_29048125_29050117_29050237_29053479_29053608_29063595_29063734_29065975_29066228_29070389_29070665_29076920_29077498_29082620_29082779_29085480_29085585_29086577_29086753_29087387_29087577_29096575_29096707_29098751_29100575_29134173_29134251_29217889
ENSMUSG00000030583.17_36	chr7	-	7590	22	NIC	ENSMUSG00000030583.17	novel	7713	23	NA	NA	-16	-3	combination_of_known_junctions	FALSE	canonical	3	18	junction_5	10.8389572006388	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAATGGCTGGTGTGTTC	NA	False	NA	-10	True	AATAAA	-8	NA	29218001	29019805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030970_29031649_29031816_29038380_29038603_29047696_29048125_29050117_29050237_29053479_29053608_29063595_29063734_29065975_29066228_29070389_29070665_29076920_29077498_29082620_29082779_29085480_29085585_29086577_29086753_29087387_29087577_29096575_29096707_29098751_29100575_29134173_29134251_29217889
ENSMUSG00000030583.17_4	chr7	-	1524	1	ISM	ENSMUSG00000030583.17	ENSMUST00000183330.8	4321	14	55704	6	7087	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGCTGGTGTGTTCTCC	NA	False	NA	-7	True	AATAAA	-11	NA	29021326	29019802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_29019800_29021300
ENSMUSG00000030583.17_48	chr7	-	4240	12	NIC	ENSMUSG00000030583.17	novel	7713	23	NA	NA	-25	1633	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	7.76940386153509	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAAGTTGTCGTTGGCTC	NA	False	NA	NA	False	AAGAAA	-34	NA	29218010	29063375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29063734_29065975_29066228_29070389_29070665_29076920_29077498_29082620_29082779_29085480_29085585_29086577_29086753_29087387_29087577_29096575_29096707_29098751_29100575_29134173_29134251_29217889
ENSMUSG00000030583.17_7	chr7	-	2974	8	NIC	ENSMUSG00000030583.17	novel	2660	10	NA	NA	-24	-4	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	14.6844357420101	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAAATGGCTGGTGTGTT	997	False	NA	-11	True	AATAAA	-7	NA	29041317	29019806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030967_29031649_29031816_29038380_29038603_29041243
ENSMUSG00000030584.15_0	chr7	+	2294	12	FSM	ENSMUSG00000030584.15	ENSMUST00000049977.13	2309	12	11	4	11	0	multi-exon	FALSE	canonical	3	46	junction_7	12.1008161735527	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTGCTTCCATCTCTAA	1800	False	NA	6	True	ATTAAA	-22	NA	29003411	29017009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
ENSMUSG00000030584.15_1	chr7	+	2260	11	NIC	ENSMUSG00000030584.15	novel	2309	12	NA	NA	-6	0	combination_of_known_junctions	TRUE	canonical	3	21	junction_7	17.2568826848884	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTGCTTCCATCTCTAA	1783	False	NA	6	True	ATTAAA	-22	NA	29003394	29017009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013707_29013828_29015048_29015162_29015668_29015751_29015905
ENSMUSG00000030584.15_10	chr7	+	2216	12	FSM	ENSMUSG00000030584.15	ENSMUST00000065181.12	1574	12	39	-681	33	0	multi-exon	FALSE	canonical	3	23	junction_1	16.304438375602	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTGCTTCCATCTCTAA	5864	False	NA	6	True	ATTAAA	-22	NA	29007475	29017009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29007524_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
ENSMUSG00000030584.15_17	chr7	+	2355	11	NIC	ENSMUSG00000030584.15	novel	2309	12	NA	NA	23	0	intron_retention	FALSE	canonical	3	46	junction_6	12.2902400302028	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTGCTTCCATCTCTAA	1812	False	NA	6	True	ATTAAA	-22	NA	29003423	29017009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29003538_29008835_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
ENSMUSG00000030584.15_2	chr7	+	2334	12	FSM	ENSMUSG00000030584.15	ENSMUST00000108231.8	2040	12	20	-314	-5	-6	multi-exon	FALSE	canonical	3	12	junction_10	19.1570283587301	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCACAACTGCTTCCAT	1784	False	NA	0	True	ATTAAA	-16	NA	29003395	29017003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015638_29015751_29015905
ENSMUSG00000030584.15_3	chr7	+	2211	11	NIC	ENSMUSG00000030584.15	novel	2309	12	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	21.9945447781944	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTGCTTCCATCTCTAA	1793	False	NA	6	True	ATTAAA	-22	NA	29003404	29017009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
ENSMUSG00000030584.15_4	chr7	+	2284	11	NIC	ENSMUSG00000030584.15	novel	2309	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	22.8989082709198	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTGCTTCCATCTCTAA	1789	False	NA	6	True	ATTAAA	-22	NA	29003400	29017009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013707_29013828_29015048_29015162_29015638_29015751_29015905
ENSMUSG00000030584.15_9	chr7	+	2168	11	NIC	ENSMUSG00000030584.15	novel	1574	12	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	20.5338744517444	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTGCTTCCATCTCTAA	5861	False	NA	6	True	ATTAAA	-22	NA	29007472	29017009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29007524_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013707_29013828_29015048_29015162_29015668_29015751_29015905
ENSMUSG00000030587.6_0	chr7	-	395	4	FSM	ENSMUSG00000030587.6	ENSMUST00000032808.6	1466	4	69	1002	-59	9	multi-exon	FALSE	canonical	3	53	junction_3	7.36357401145817	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCCTCTGCCGGTCAGA	1852	False	NA	-2	True	ATTAAA	-23	NA	28947822	28946987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28947160_28947321_28947391_28947552_28947666_28947781
ENSMUSG00000030588.13_0	chr7	+	1101	8	FSM	ENSMUSG00000030588.13	ENSMUST00000032809.10	1111	8	10	0	10	0	multi-exon	FALSE	canonical	3	488	junction_1	365.371993833067	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6071	False	NA	12	True	AATAAA	-15	NA	28937787	28946954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUSG00000030588.13_1	chr7	+	1095	8	FSM	ENSMUSG00000030588.13	ENSMUST00000108238.8	1126	8	31	0	7	0	multi-exon	FALSE	canonical	3	755	junction_1	273.775194535329	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6068	False	NA	12	True	AATAAA	-15	NA	28937784	28946954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28937862_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUSG00000030588.13_21	chr7	+	1108	8	NIC	ENSMUSG00000030588.13	novel	1153	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	515.665569523346	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6182	False	NA	12	True	AATAAA	-15	NA	28937898	28946954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28937989_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUSG00000030588.13_22	chr7	+	1137	8	NIC	ENSMUSG00000030588.13	novel	1153	8	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	150	junction_1	482.335940174142	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6201	False	NA	12	True	AATAAA	-15	NA	28937917	28946954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUSG00000030589.16_2	chr7	+	2016	16	ISM	ENSMUSG00000030589.16	ENSMUST00000032811.12	4621	17	2704	2346	2564	-4	3prime_fragment	FALSE	non_canonical	0	0	junction_2	15.5905954558082	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGCACTGACTGCCAGTCA	417	False	NA	14	True	AAAAAG	-13	NA	28837061	28851040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28837151_28838235_28838342_28838467_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848557_28849223_28849261_28849346_28849482_28849603_28849717_28850870
ENSMUSG00000030589.16_4	chr7	+	2043	16	ISM	ENSMUSG00000030589.16	ENSMUST00000159975.8	2296	17	2697	1	2557	1	3prime_fragment	TRUE	non_canonical	0	0	junction_2	17.9245331567907	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACTGCCAGTCACACTC	410	False	NA	19	True	AAAAAG	-18	NA	28837054	28851045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28837151_28838235_28838342_28838467_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848572_28849223_28849261_28849346_28849482_28849603_28849717_28850870
ENSMUSG00000030589.16_6	chr7	+	2776	14	NIC	ENSMUSG00000030589.16	novel	2296	17	NA	NA	2562	1	intron_retention	FALSE	non_canonical	0	0	junction_2	15.6541769006828	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACTGCCAGTCACACTC	415	False	NA	19	True	AAAAAG	-18	NA	28837059	28851045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28837151_28838235_28838342_28838467_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28849482_28849603_28849717_28850870
ENSMUSG00000030590.16_0	chr7	-	1254	8	FSM	ENSMUSG00000030590.16	ENSMUST00000164589.9	1293	8	37	2	6	0	multi-exon	FALSE	canonical	3	257	junction_3	23.9565934002925	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855622	28851936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
ENSMUSG00000030590.16_11	chr7	-	2506	6	NIC	ENSMUSG00000030590.16	novel	2169	7	NA	NA	-5	2	intron_retention	FALSE	canonical	3	257	junction_2	26.1717404847289	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCTATAGGATCTTGTTT	NA	False	NA	-8	True	AATAAA	-14	NA	28855633	28851941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28852273_28852746_28853961_28854040_28854119_28854576_28855235_28855309_28855456_28855554
ENSMUSG00000030590.16_14	chr7	-	1335	7	FSM	ENSMUSG00000030590.16	ENSMUST00000123545.8	1359	7	24	0	4	0	multi-exon	FALSE	canonical	3	257	junction_3	25.8698666405531	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855604	28851936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309
ENSMUSG00000030590.16_16	chr7	-	2563	5	NIC	ENSMUSG00000030590.16	novel	2169	7	NA	NA	-7	2	intron_retention	FALSE	canonical	3	257	junction_2	27.2213151776324	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCTATAGGATCTTGTTT	NA	False	NA	-8	True	AATAAA	-14	NA	28855615	28851941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28852273_28852746_28853961_28854040_28854119_28854576_28855456_28855554
ENSMUSG00000030590.16_4	chr7	-	1573	7	NIC	ENSMUSG00000030590.16	novel	1293	8	NA	NA	4	0	intron_retention	FALSE	canonical	3	257	junction_3	25.0493956458479	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855624	28851936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28855235_28855309_28855456_28855554
ENSMUSG00000030590.16_5	chr7	-	2260	6	NIC	ENSMUSG00000030590.16	novel	2169	7	NA	NA	4	0	intron_retention	FALSE	canonical	3	257	junction_2	24.6121921006643	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855624	28851936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28852273_28852746_28853961_28854040_28854119_28854576_28854783_28855099_28855456_28855554
ENSMUSG00000030590.16_6	chr7	-	2185	7	FSM	ENSMUSG00000030590.16	ENSMUST00000147561.8	2169	7	-16	0	4	0	multi-exon	FALSE	canonical	3	257	junction_2	24.4386988196999	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855624	28851936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28852273_28852746_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
ENSMUSG00000030590.16_9	chr7	-	2263	6	ISM	ENSMUSG00000030590.16	ENSMUST00000147561.8	2169	7	5	0	5	0	intron_retention	FALSE	canonical	3	257	junction_2	26.6803298330437	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855603	28851936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_28852273_28852746_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309
ENSMUSG00000030591.18_0	chr7	-	1262	7	FSM	ENSMUSG00000030591.18	ENSMUST00000182328.8	1391	7	56	73	-15	-73	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	966	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAGACATGAAACTGA	NA	False	NA	-13	True	ATTAAA	-9	NA	28879921	28873685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ENSMUSG00000030592.19_2	chr7	-	3216	20	ISM	ENSMUSG00000030592.19	ENSMUST00000179893.9	15358	106	84749	-3	6281	3	3prime_fragment	TRUE	canonical	1	4	junction_15	3.91176930022359	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTGTGTTGGTCATTTA	1984	False	NA	NA	False	AATAAA	-21	NA	28739827	28702765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_28702979_28703158_28703211_28703849_28703951_28704207_28704273_28704919_28705077_28707808_28707944_28708479_28708627_28708931_28708993_28709085_28709217_28711620_28711664_28713162_28713294_28715055_28715308_28716508_28716596_28717318_28717470_28718187_28718259_28718899_28719692_28723427_28723770_28735404_28735593_28737771_28737854_28739812
ENSMUSG00000030595.16_0	chr7	-	1192	6	FSM	ENSMUSG00000030595.16	ENSMUST00000085851.12	1243	6	37	14	37	-14	multi-exon	FALSE	canonical	3	539	junction_1	23.6761483354029	423	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCCAGACTGACCCTGC	NA	False	NA	-13	True	AATAAA	-19	NA	28465902	28458470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
ENSMUSG00000030598.16_0	chr7	+	1840	8	FSM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	-34	0	-6	0	multi-exon	FALSE	canonical	3	49	junction_7	33.4310133418242	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416222	28437563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
ENSMUSG00000030598.16_1	chr7	+	1956	7	FSM	ENSMUSG00000030598.16	ENSMUST00000032818.13	1958	7	-4	6	-4	0	multi-exon	FALSE	canonical	3	89	junction_6	22.6838170411321	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416224	28437563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763
ENSMUSG00000030598.16_16	chr7	+	1409	5	ISM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	16214	0	546	0	3prime_fragment	FALSE	canonical	3	49	junction_4	39.6169155790806	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28432470	28437563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
ENSMUSG00000030598.16_2	chr7	+	1635	7	FSM	ENSMUSG00000030598.16	ENSMUST00000108279.9	1563	7	-78	6	-9	0	multi-exon	FALSE	canonical	3	40	junction_6	37.5340586075574	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416219	28437563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28437089
ENSMUSG00000030598.16_21	chr7	+	180	1	ISM	ENSMUSG00000030598.16	ENSMUST00000032818.13	1958	7	21155	6	5459	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	986	False	NA	NA	False	NA	NA	NA	28437383	28437563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28437400_28437600
ENSMUSG00000030598.16_3	chr7	+	3099	6	ISM	ENSMUSG00000030598.16	ENSMUST00000032818.13	1958	7	-12	6	-12	0	intron_retention	FALSE	canonical	3	102	junction_3	18.2909813842779	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416216	28437563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492
ENSMUSG00000030598.16_31	chr7	+	1618	4	ISM	ENSMUSG00000030598.16	ENSMUST00000167118.2	861	5	455	-656	455	0	3prime_fragment	FALSE	canonical	3	89	junction_3	25.4689353265241	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28432379	28437563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28432966_28434701_28434798_28435492_28435629_28436763
ENSMUSG00000030600.16_0	chr7	+	3285	5	NNC	ENSMUSG00000030600.16	novel	3060	2	NA	NA	-3586	-4	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_1	26.5706605111728	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCAGTGTGTGAGTGTG	392	False	NA	24	True	ATTAAA	-28	NA	28147818	28167663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_28147929_28153921_28153955_28157383_28157439_28158051_28159489_28166013
ENSMUSG00000030600.16_10	chr7	+	1786	5	NIC	ENSMUSG00000030600.16	novel	812	4	NA	NA	-70	-12	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	25.810608284192	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGGAAATAATTACCTAA	3908	False	NA	NA	False	AATAAA	-6	NA	28151334	28161545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28151470_28153921_28153955_28157383_28157439_28158051_28159489_28161419
ENSMUSG00000030600.16_12	chr7	+	3425	5	NIC	ENSMUSG00000030600.16	novel	1852	5	NA	NA	-59	-2	combination_of_known_junctions	TRUE	canonical	1	5	junction_1	26.5706605111728	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGTGTGTGAGTGTGTG	4087	False	NA	26	True	ATTAAA	-30	NA	28151513	28167665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28151762_28153921_28153955_28157383_28157439_28158051_28159489_28166013
ENSMUSG00000030600.16_13	chr7	+	2548	2	FSM	ENSMUSG00000030600.16	ENSMUST00000108288.9	3060	2	509	3	509	-3	multi-exon	FALSE	canonical	3	65	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCAGTGTGTGAGTGTGT	599	False	NA	25	True	ATTAAA	-29	NA	28158591	28167664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28159489_28166013
ENSMUSG00000030600.16_2	chr7	+	3316	5	NIC	ENSMUSG00000030600.16	novel	812	4	NA	NA	-74	-2	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	6.68954408012983	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGTGTGTGAGTGTGTG	3904	False	NA	26	True	ATTAAA	-30	NA	28151330	28167665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28151470_28153921_28153955_28157383_28157439_28158051_28159489_28166013
ENSMUSG00000030600.16_20	chr7	+	1289	1	ISM	ENSMUSG00000030600.16	ENSMUST00000108288.9	3060	2	8291	5	8291	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGACCAGTGTGTGAGTGT	1611	False	NA	23	True	ATTAAA	-27	NA	28166373	28167662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28166400_28167700
ENSMUSG00000030600.16_7	chr7	+	3745	4	FSM	ENSMUSG00000030600.16	ENSMUST00000190954.7	812	4	-98	-2835	-98	-12	multi-exon	FALSE	canonical	3	51	junction_1	7.54247233265651	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGGAAATAATTACCTAA	3880	False	NA	NA	False	AATAAA	-6	NA	28151306	28161545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28151470_28153921_28153955_28157383_28157439_28158051
ENSMUSG00000030602.14_0	chr7	-	2168	7	ISM	ENSMUSG00000030602.14	ENSMUST00000032823.5	2611	8	3202	3	3202	-3	3prime_fragment	FALSE	canonical	3	672	junction_4	19.3455421221531	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTGTGTGTGTATGTGT	NA	False	NA	-8	True	ATTAAA	-16	NA	28264460	28258248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237
ENSMUSG00000030602.14_2	chr7	-	2866	10	FSM	ENSMUSG00000030602.14	ENSMUST00000108283.8	2899	10	29	4	-1	-2	multi-exon	TRUE	canonical	3	622	junction_9	35.4843036069349	1163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGTGTGTATGTGTG	4625	False	NA	-7	True	ATTAAA	-17	NA	28297581	28258247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28297459
ENSMUSG00000030602.14_3	chr7	-	3008	11	NIC	ENSMUSG00000030602.14	novel	2899	10	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	113	junction_9	227.845759231986	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGTGTGTATGTGTG	4625	False	NA	-7	True	ATTAAA	-17	NA	28297581	28258247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28269596_28269739_28297459
ENSMUSG00000030603.17_1	chr7	-	1385	11	FSM	ENSMUSG00000030603.17	ENSMUST00000032824.10	1440	11	48	7	3	2	multi-exon	FALSE	canonical	3	2113	junction_5	109.082033351052	1719	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTAATTTCTTCTTAGGT	NA	False	NA	-11	True	AATAAA	-17	NA	27749478	27741138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
ENSMUSG00000030604.10_2	chr7	+	871	1	ISM	ENSMUSG00000030604.10	ENSMUST00000205671.2	5329	4	14846	4	11229	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACACTGTGTTTAAGTGG	NA	False	NA	5	True	NA	NA	NA	27521466	27522337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27521500_27522300
ENSMUSG00000030605.16_0	chr7	-	2000	9	FSM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	5	3	5	-2	multi-exon	TRUE	canonical	3	790	junction_6	144.155948541848	1216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCCTCTGTGCCTCCTCA	NA	False	NA	-8	True	AATACA	-16	NA	78798796	78783518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
ENSMUSG00000030605.16_1	chr7	-	2110	10	FSM	ENSMUSG00000030605.16	ENSMUST00000032825.14	2125	10	12	3	5	-3	multi-exon	FALSE	canonical	3	296	junction_6	379.595691346581	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGACCCTCTGTGCCTCCTC	NA	False	NA	-9	True	AATACA	-15	NA	78798796	78783519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793025_78793137_78794994_78795127_78795369_78795493_78798642
ENSMUSG00000030606.9_2	chr7	-	3317	5	FSM	ENSMUSG00000030606.9	ENSMUST00000206092.2	3358	5	2	39	2	-39	multi-exon	FALSE	canonical	2	5	junction_4	1.87082869338697	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAATAAAAAATAAAAAA	2277	False	NA	NA	False	AATAGA	-5	NA	78780764	78764888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_78767242_78767596_78767900_78771394_78771764_78773117_78773300_78780654
ENSMUSG00000030606.9_3	chr7	-	2707	3	ISM	ENSMUSG00000030606.9	ENSMUST00000206092.2	3358	5	9353	7	7014	-7	3prime_fragment	FALSE	canonical	2	6	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAAATAGATCTCTTC	NA	False	NA	NA	False	AATAGA	-37	NA	78771413	78764856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_78767242_78767596_78767900_78771394
ENSMUSG00000030606.9_4	chr7	-	1398	4	ISM	ENSMUSG00000030606.9	ENSMUST00000206092.2	3358	5	7359	1956	5020	-38	3prime_fragment	FALSE	canonical	2	6	junction_2	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAAAGTATTATTATTA	9634	False	NA	NA	False	TTTAAA	-22	NA	78773407	78766805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_78767242_78767596_78767900_78771394_78771764_78773117
ENSMUSG00000030607.8_2	chr7	+	6653	12	ISM	ENSMUSG00000030607.8	ENSMUST00000032835.7	7355	17	35922	10	-10346	-10	3prime_fragment	FALSE	canonical	2	2	junction_7	4.66745369199761	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATCTATTTCTTTTCT	NA	False	NA	NA	False	AATAAA	-9	NA	78739152	78764837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_78739645_78740686_78741092_78742060_78742236_78742426_78742555_78743729_78744024_78746414_78746631_78747499_78750983_78761041_78761201_78761702_78761786_78762421_78762567_78763402_78763586_78763947
ENSMUSG00000030607.8_3	chr7	+	6762	13	NIC	ENSMUSG00000030607.8	novel	7355	17	NA	NA	-10341	-10	combination_of_known_junctions	FALSE	canonical	2	3	junction_7	4.46203117674252	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATCTATTTCTTTTCT	NA	False	NA	NA	False	AATAAA	-9	NA	78739157	78764837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_78739645_78740686_78741092_78742060_78742236_78742426_78742555_78743729_78744024_78746414_78746631_78747499_78750983_78757862_78757977_78761041_78761201_78761702_78761786_78762421_78762567_78763402_78763586_78763947
ENSMUSG00000030607.8_4	chr7	+	1798	4	ISM	ENSMUSG00000030607.8	ENSMUST00000032835.7	7355	17	35913	21704	-10355	-21232	internal_fragment	FALSE	canonical	2	5	junction_1	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAACGCTGGGTAGACA	NA	False	NA	NA	False	NA	NA	NA	78739143	78743143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_78739645_78740686_78741092_78742060_78742236_78742426
ENSMUSG00000030607.8_5	chr7	+	5780	13	NNC	ENSMUSG00000030607.8	novel	2596	7	NA	NA	-10345	-230	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	4.27849921766448	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAACCCACATTGTGT	NA	False	NA	NA	False	ATTAAA	-6	NA	78739153	78764145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_78739351_78740686_78741092_78742060_78742236_78742426_78742555_78743729_78744024_78746414_78746631_78747499_78750983_78757862_78757977_78761041_78761201_78761702_78761786_78762421_78762567_78763402_78763586_78763947
ENSMUSG00000030607.8_9	chr7	+	2063	7	FSM	ENSMUSG00000030607.8	ENSMUST00000206779.2	2596	7	532	1	532	-1	multi-exon	FALSE	canonical	2	3	junction_1	4.81028989655394	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTGTTTCCTGACTTT	NA	False	NA	NA	False	AATAAA	-14	NA	78750030	78764374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_78750983_78757862_78757977_78761041_78761201_78761702_78761786_78762421_78762567_78763402_78763586_78763947
ENSMUSG00000030609.19_0	chr7	+	1982	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	18	7	1	-4	multi-exon	FALSE	canonical	3	314	junction_1	165.023903992388	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGAGTGAACTGGTCC	NA	False	NA	NA	False	AATAAA	-11	NA	78545699	78558122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_78545763_78552091_78552579_78555590_78555792_78556891
ENSMUSG00000030609.19_1	chr7	+	2100	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107425.8	4956	4	21	2835	-3	-4	multi-exon	FALSE	canonical	3	272	junction_1	184.819431397844	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGAGTGAACTGGTCC	NA	False	NA	NA	False	AATAAA	-11	NA	78545695	78558122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_78545763_78551977_78552579_78555590_78555792_78556891
ENSMUSG00000030609.19_12	chr7	+	2220	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107423.2	2230	4	6	4	6	-4	multi-exon	FALSE	canonical	2	13	junction_1	306.901721511409	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGAGTGAACTGGTCC	NA	False	NA	NA	False	AATAAA	-11	NA	78545762	78558122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_78545950_78551977_78552579_78555590_78555792_78556891
ENSMUSG00000030609.19_16	chr7	+	2038	3	ISM	ENSMUSG00000030609.19	ENSMUST00000107423.2	2230	4	6216	4	-136	-4	3prime_fragment	FALSE	canonical	3	660	junction_1	4	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGAGTGAACTGGTCC	NA	False	NA	NA	False	AATAAA	-11	NA	78551972	78558122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_78552579_78555590_78555792_78556891
ENSMUSG00000030609.19_20	chr7	+	3242	1	ISM	ENSMUSG00000030609.19	ENSMUST00000123824.2	4428	3	12114	0	5389	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGTAATCTGATGGAAT	NA	False	NA	2	True	NA	NA	NA	78557715	78560957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_78557700_78561000
ENSMUSG00000030610.14_1	chr7	-	2533	5	NIC	ENSMUSG00000030610.14	novel	2269	5	NA	NA	70	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	41.3098051314697	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGACACTGTCTCTTCCTT	NA	False	NA	-5	True	AATAAA	-16	NA	78496941	78477223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_78477861_78483858_78484051_78489752_78489941_78492583_78494013_78496854
ENSMUSG00000030610.14_2	chr7	-	2223	5	FSM	ENSMUSG00000030610.14	ENSMUST00000032839.13	2269	5	45	1	45	-1	multi-exon	FALSE	canonical	3	86	junction_2	8.89873586527884	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGACACTGTCTCTTCCTTG	NA	False	NA	-4	True	AATAAA	-17	NA	78496966	78477222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_78477861_78483858_78484051_78489752_78489941_78492919_78494013_78496854
ENSMUSG00000030610.14_4	chr7	-	1404	4	ISM	ENSMUSG00000030610.14	ENSMUST00000032839.13	2269	5	3705	2	-305	-2	3prime_fragment	FALSE	canonical	3	86	junction_2	6.23609564462324	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGACACTGTCTCTTCCTT	NA	False	NA	-5	True	AATAAA	-16	NA	78493306	78477223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_78477861_78483858_78484051_78489752_78489941_78492919
ENSMUSG00000030611.11_0	chr7	+	828	6	FSM	ENSMUSG00000030611.11	ENSMUST00000032840.5	1056	6	227	1	-9	-1	multi-exon	FALSE	canonical	3	364	junction_2	39.2153031353833	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGCTGTGAGTTTTTGTT	NA	False	NA	2	True	AATAAA	-15	NA	78433093	78442736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ENSMUSG00000030611.11_1	chr7	+	826	6	FSM	ENSMUSG00000030611.11	ENSMUST00000133553.8	825	6	-2	1	-1	-1	multi-exon	FALSE	canonical	3	70	junction_2	143.488814895099	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGCTGTGAGTTTTTGTT	NA	False	NA	2	True	AATAAA	-15	NA	78433101	78442736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_78433172_78433320_78433435_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ENSMUSG00000030611.11_3	chr7	+	2639	4	FSM	ENSMUSG00000030611.11	ENSMUST00000136001.8	548	4	-26	-2065	-11	-1	multi-exon	FALSE	canonical	3	364	junction_2	42.7083130081252	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGCTGTGAGTTTTTGTT	NA	False	NA	2	True	AATAAA	-15	NA	78433091	78442736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384
ENSMUSG00000030612.7_0	chr7	-	977	4	FSM	ENSMUSG00000030612.7	ENSMUST00000032841.7	1134	4	50	107	50	-107	multi-exon	FALSE	canonical	3	446	junction_2	24.7296493213219	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGATTTGTCCTTGGT	NA	False	NA	-7	True	ATTAAA	-20	NA	78432787	78425090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_78425474_78430185_78430360_78431147_78431335_78432554
ENSMUSG00000030613.14_0	chr7	+	1221	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	367	8	367	-8	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGTATCTCATTGTAAA	NA	False	NA	2	True	AATAAA	-10	NA	92210723	92231494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
ENSMUSG00000030614.9_1	chr7	-	2648	4	NIC	ENSMUSG00000030614.9	novel	2259	5	NA	NA	3	-10	intron_retention	FALSE	canonical	3	242	junction_2	12.657891697365	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAAGGAGAATGCATG	6029	False	NA	NA	False	NA	NA	NA	90125200	90116655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_90118890_90119972_90120167_90121805_90121928_90125102
ENSMUSG00000030614.9_2	chr7	-	2090	5	FSM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	9	160	3	-160	multi-exon	FALSE	canonical	3	210	junction_1	24.1389208540896	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGGGGCACATTGT	6029	False	NA	NA	False	NA	NA	NA	90125200	90116805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
ENSMUSG00000030614.9_5	chr7	-	2496	4	NIC	ENSMUSG00000030614.9	novel	2259	5	NA	NA	3	1092	intron_retention	FALSE	canonical	3	210	junction_1	27.6526068692749	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACAAGTTTCTTCTTTC	6029	False	NA	NA	False	TATAAA	-9	NA	90125200	90118038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_90118370_90118777_90118890_90119972_90121928_90125102
ENSMUSG00000030615.13_0	chr7	-	755	5	FSM	ENSMUSG00000030615.13	ENSMUST00000032844.7	799	5	32	12	11	0	multi-exon	FALSE	canonical	3	739	junction_4	32.5297940356222	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATCTTGTCTGCAAC	1677	False	NA	NA	False	AATAAA	-7	NA	90106405	90099919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_90100144_90100750_90100866_90101914_90102109_90104631_90104728_90106279
ENSMUSG00000030615.13_1	chr7	-	552	4	FSM	ENSMUSG00000030615.13	ENSMUST00000207159.2	466	4	-86	0	-3	0	multi-exon	FALSE	canonical	3	26	junction_2	346.691345275432	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATCTTGTCTGCAAC	1686	False	NA	NA	False	AATAAA	-7	NA	90106396	90099919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_90100144_90100750_90100866_90104631_90104728_90106279
ENSMUSG00000030615.13_2	chr7	-	729	5	FSM	ENSMUSG00000030615.13	ENSMUST00000136652.8	756	5	15	12	-8	0	multi-exon	FALSE	canonical	3	71	junction_2	308.308591349641	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATCTTGTCTGCAAC	1681	False	NA	NA	False	AATAAA	-7	NA	90106401	90099919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_90100144_90100750_90100866_90101936_90102109_90104631_90104728_90106279
ENSMUSG00000030615.13_3	chr7	-	2413	3	NIC	ENSMUSG00000030615.13	novel	466	4	NA	NA	9	0	intron_retention	FALSE	canonical	3	739	junction_2	40	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATCTTGTCTGCAAC	1675	False	NA	NA	False	AATAAA	-7	NA	90106407	90099919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_90102109_90104631_90104728_90106279
ENSMUSG00000030615.13_6	chr7	-	1799	4	NIC	ENSMUSG00000030615.13	novel	466	4	NA	NA	-7	0	intron_retention	FALSE	canonical	3	739	junction_3	32.6904675198546	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATCTTGTCTGCAAC	1682	False	NA	NA	False	AATAAA	-7	NA	90106400	90099919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_90100144_90100750_90102109_90104631_90104728_90106279
ENSMUSG00000030615.13_9	chr7	-	2250	1	FSM	ENSMUSG00000030615.13	ENSMUST00000208639.2	1730	1	0	-520	0	269	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1689	False	NA	NA	False	NA	NA	NA	90106393	90104143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_90104100_90106400
ENSMUSG00000030619.11_0	chr7	-	1571	12	FSM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	135	-203	-8	-74	multi-exon	FALSE	canonical	3	1777	junction_2	230.503903625897	1354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGTTATTTTTATT	NA	False	NA	-12	True	AATAAA	-14	NA	89629775	89603941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUSG00000030619.11_5	chr7	-	1477	12	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	-3	-74	combination_of_known_junctions	FALSE	canonical	3	461	junction_2	565.94251087883	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGTTATTTTTATT	NA	False	NA	-12	True	AATAAA	-14	NA	89629770	89603941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUSG00000030629.16_0	chr7	-	1574	7	FSM	ENSMUSG00000030629.16	ENSMUST00000209117.2	2955	7	93	1288	19	0	multi-exon	FALSE	canonical	3	577	junction_5	69.5045961709648	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84339072	84264261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
ENSMUSG00000030629.16_1	chr7	-	1567	7	NIC	ENSMUSG00000030629.16	novel	2955	7	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	3	150	junction_5	197.190615620746	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84339068	84264261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283199_84283446_84283618_84338953
ENSMUSG00000030629.16_15	chr7	-	1723	8	FSM	ENSMUSG00000030629.16	ENSMUST00000209165.2	967	8	30	-786	30	-1	multi-exon	FALSE	canonical	3	64	junction_6	270.713795702534	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAAAAGCTACGTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	84339061	84264262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84302089_84302251_84338953
ENSMUSG00000030629.16_2	chr7	-	1529	7	FSM	ENSMUSG00000030629.16	ENSMUST00000178385.9	1538	7	9	0	9	0	multi-exon	FALSE	canonical	3	57	junction_6	230.002475832085	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84328591	84264261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84328517
ENSMUSG00000030629.16_5	chr7	-	4477	6	NIC	ENSMUSG00000030629.16	novel	2955	7	NA	NA	19	-1	intron_retention	FALSE	canonical	3	577	junction_4	72.676268478782	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAAAAGCTACGTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	84339072	84264262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_84265177_84267057_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
ENSMUSG00000030630.17_0	chr7	-	1439	14	FSM	ENSMUSG00000030630.17	ENSMUST00000032865.17	1585	14	132	14	-81	-14	multi-exon	FALSE	canonical	3	97	junction_9	7.3524942432914	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCCACAGAAATCTCTG	NA	False	NA	-18	True	AATAAA	-18	NA	84255018	84234380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84248353_84249984_84250035_84250240_84250363_84251288_84251400_84254850
ENSMUSG00000030630.17_6	chr7	-	1356	10	ISM	ENSMUSG00000030630.17	ENSMUST00000032865.17	1585	14	6430	14	2588	-14	3prime_fragment	FALSE	canonical	3	97	junction_9	8.08901098808946	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCCACAGAAATCTCTG	NA	False	NA	-18	True	AATAAA	-18	NA	84248720	84234380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261
ENSMUSG00000030638.14_0	chr7	+	1590	9	FSM	ENSMUSG00000030638.14	ENSMUST00000032874.14	1647	9	47	10	1	-10	multi-exon	FALSE	canonical	3	252	junction_3	40.04040927613	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCATAAAAGACTGGTTAT	NA	False	NA	7	True	AATAAA	-14	NA	81824590	81956617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_81824768_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
ENSMUSG00000030638.14_1	chr7	+	1581	9	FSM	ENSMUSG00000030638.14	ENSMUST00000177895.8	1486	9	-105	10	3	-10	multi-exon	FALSE	canonical	3	79	junction_3	89.2394951801051	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCATAAAAGACTGGTTAT	NA	False	NA	7	True	AATAAA	-14	NA	81824592	81956617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_81824768_81909339_81909409_81917487_81917561_81919987_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
ENSMUSG00000030638.14_3	chr7	+	4015	8	NIC	ENSMUSG00000030638.14	novel	1647	9	NA	NA	0	-6	intron_retention	FALSE	canonical	3	279	junction_1	31.6311652052987	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGACTGGTTATTTTC	NA	False	NA	11	True	AATAAA	-18	NA	81824589	81956621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_81824768_81909339_81909409_81917487_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
ENSMUSG00000030638.14_32	chr7	+	1505	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	-30748	-11	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_1	100.011249367259	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTCATAAAAGACTGGTTA	NA	False	NA	6	True	AATAAA	-13	NA	81889345	81956616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_81889439_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
ENSMUSG00000030638.14_44	chr7	+	2596	3	ISM	ENSMUSG00000030638.14	ENSMUST00000177895.8	1486	9	106803	10	11407	-10	3prime_fragment	FALSE	canonical	3	343	junction_1	15	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCATAAAAGACTGGTTAT	NA	False	NA	7	True	AATAAA	-14	NA	81931500	81956617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_81933367_81934228_81934339_81955997
ENSMUSG00000030641.11_0	chr7	-	3352	6	FSM	ENSMUSG00000030641.11	ENSMUST00000032877.11	3387	6	25	10	10	-10	multi-exon	FALSE	canonical	3	123	junction_4	35.6168499449348	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCCAAAATATCTTTTTT	NA	False	NA	-11	True	AGTAAA	-8	NA	92523430	92506742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92521969_92522053_92523348
ENSMUSG00000030641.11_1	chr7	-	3439	7	FSM	ENSMUSG00000030641.11	ENSMUST00000208356.2	840	7	15	-2614	10	-10	multi-exon	FALSE	canonical	3	86	junction_4	58.4648517392193	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCCAAAATATCTTTTTT	NA	False	NA	-11	True	AGTAAA	-8	NA	92523430	92506742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92517319_92517407_92521969_92522053_92523348
ENSMUSG00000030641.11_3	chr7	-	2275	1	ISM	ENSMUSG00000030641.11	ENSMUST00000032877.11	3387	6	14438	10	14367	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCCAAAATATCTTTTTT	NA	False	NA	-11	True	AGTAAA	-8	NA	92509017	92506742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_92506700_92509000
ENSMUSG00000030643.15_0	chr7	+	1463	5	FSM	ENSMUSG00000030643.15	ENSMUST00000032879.15	9456	5	99	7894	35	-3	multi-exon	FALSE	canonical	3	12	junction_3	4.32290411644765	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCATGAGTCAGCAGTC	NA	False	NA	NA	False	AATAAA	-14	NA	92390909	92485849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_92391051_92469190_92469292_92473005_92473090_92478733_92478918_92484896
ENSMUSG00000030643.15_1	chr7	+	3041	1	ISM	ENSMUSG00000030643.15	ENSMUST00000032879.15	9456	5	99891	1	21574	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTGGAGGATTATATACCA	NA	False	NA	NA	False	AATAAA	-18	NA	92490701	92493742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_92490700_92493700
ENSMUSG00000030647.9_0	chr7	+	600	3	FSM	ENSMUSG00000030647.9	ENSMUST00000032882.9	683	3	75	8	-25	-8	multi-exon	FALSE	canonical	3	2164	junction_2	233	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCATCTGTTCCTTTCCT	NA	False	NA	13	True	ATTAAA	-12	NA	97049284	97057001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_97049565_97056072_97056217_97056825
ENSMUSG00000030649.19_0	chr7	+	3260	5	NIC	ENSMUSG00000030649.19	novel	937	5	NA	NA	-6	-5	intron_retention	FALSE	canonical	3	98	junction_2	210.842802817644	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTGAATAACTTGGTCC	7811	False	NA	1	True	NA	NA	NA	101545608	101551047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101545658_101546939_101547025_101547153_101547279_101547760_101547821_101548106
ENSMUSG00000030649.19_1	chr7	+	739	5	FSM	ENSMUSG00000030649.19	ENSMUST00000106973.8	650	5	-29	-60	-21	0	multi-exon	FALSE	canonical	3	48	junction_1	224.489420686143	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAATGTCTATTCCCTGTT	7796	False	NA	21	True	AATAAA	-21	NA	101545593	101548747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101545658_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000030649.19_13	chr7	+	865	4	ISM	ENSMUSG00000030649.19	ENSMUST00000106973.8	650	5	-1	-58	-1	0	intron_retention	FALSE	canonical	3	48	junction_1	258.681700594035	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7824	False	NA	19	True	AATAAA	-19	NA	101545621	101548745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101545658_101547148_101547279_101547760_101547821_101548106
ENSMUSG00000030649.19_14	chr7	+	2347	1	ISM	ENSMUSG00000030649.19	ENSMUST00000144207.9	3103	6	3079	7	504	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGAATAACTTGGTCCAG	619	False	NA	3	True	NA	NA	NA	101548702	101551049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101548700_101551000
ENSMUSG00000030649.19_28	chr7	+	1271	6	NIC	ENSMUSG00000030649.19	novel	818	5	NA	NA	-14	1	intron_retention	FALSE	canonical	3	43	junction_1	203.291318063512	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAATGTCTATTCCCTGT	8258	False	NA	20	True	AATAAA	-20	NA	101546055	101548746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101546568_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000030649.19_3	chr7	+	806	6	FSM	ENSMUSG00000030649.19	ENSMUST00000144207.9	3103	6	-11	2308	-2	1	multi-exon	FALSE	canonical	3	304	junction_1	109.312396369305	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATGTCTATTCCCTGTTT	7815	False	NA	22	True	AATAAA	-22	NA	101545612	101548748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000030649.19_36	chr7	+	760	5	FSM	ENSMUSG00000030649.19	ENSMUST00000178851.2	2797	5	-63	2100	0	1	multi-exon	FALSE	canonical	3	447	junction_4	71.736932607967	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAATGTCTATTCCCTGT	9141	False	NA	20	True	AATAAA	-20	NA	101546938	101548746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000030649.19_6	chr7	+	803	6	NIC	ENSMUSG00000030649.19	novel	3103	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_2	189.568562794573	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCTATTCCCTGTTTGT	7815	False	NA	24	True	AATAAA	-24	NA	101545612	101548750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101545658_101546939_101547025_101547153_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000030649.19_7	chr7	+	3263	5	FSM	ENSMUSG00000030649.19	ENSMUST00000032884.16	937	5	-22	-2304	-2	-3	multi-exon	FALSE	canonical	3	304	junction_1	120.728000066265	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGAATAACTTGGTCCAG	7815	False	NA	3	True	NA	NA	NA	101545612	101551049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106
ENSMUSG00000030652.12_0	chr7	-	862	6	FSM	ENSMUSG00000030652.12	ENSMUST00000032887.4	914	6	51	1	-4	-1	multi-exon	FALSE	canonical	3	921	junction_3	42.5234053198941	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCTTGGTTTTCTTGTGC	6676	False	NA	-3	True	AATAAA	-15	NA	118132528	118124285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118127642_118128781_118128961_118132401
ENSMUSG00000030652.12_2	chr7	-	2003	5	NIC	ENSMUSG00000030652.12	novel	914	6	NA	NA	-5	-1	intron_retention	FALSE	canonical	3	921	junction_3	45.3376223461266	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCTTGGTTTTCTTGTGC	6675	False	NA	-3	True	AATAAA	-15	NA	118132529	118124285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118128961_118132401
ENSMUSG00000030654.10_0	chr7	-	2070	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	87	14	-1	-14	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	2738	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTTTTGTCTCACTTTC	NA	False	NA	-25	True	ATTAAA	-11	NA	117728798	117718127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
ENSMUSG00000030655.16_10	chr7	-	7324	16	ISM	ENSMUSG00000030655.16	ENSMUST00000179331.9	12147	61	58623	-2728	4917	-11	3prime_fragment	FALSE	canonical	3	89	junction_9	10.8185026690388	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAGATAACAGTATCTA	NA	False	NA	-15	True	AATAAA	-18	NA	117753570	117730541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_117734842_117735908_117736016_117736096_117736277_117738635_117738743_117738897_117739110_117739652_117739881_117740532_117740713_117740942_117741096_117742480_117742616_117744553_117745024_117745190_117745381_117745473_117745625_117747956_117748184_117751500_117751736_117751899_117752173_117753394
ENSMUSG00000030655.16_15	chr7	-	5416	8	ISM	ENSMUSG00000030655.16	ENSMUST00000179331.9	12147	61	71150	-2729	-21	-10	3prime_fragment	FALSE	canonical	3	101	junction_3	8.71311467541538	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGATAACAGTATCTAA	NA	False	NA	-14	True	AATAAA	-19	NA	117741043	117730540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_117734842_117735908_117736016_117736096_117736277_117738635_117738743_117738897_117739110_117739652_117739881_117740532_117740713_117740942
ENSMUSG00000030655.16_2	chr7	-	3396	1	ISM	ENSMUSG00000030655.16	ENSMUST00000032891.15	15557	63	108924	10	1112	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGATAACAGTATCTAA	NA	False	NA	-14	True	AATAAA	-19	NA	117733936	117730540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_117730500_117733900
ENSMUSG00000030655.16_28	chr7	-	15553	63	FSM	ENSMUSG00000030655.16	ENSMUST00000032891.15	15557	63	-6	10	-6	-10	multi-exon	TRUE	canonical	3	32	junction_39	26.3486045060696	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGATAACAGTATCTAA	NA	False	NA	-14	True	AATAAA	-19	NA	117842866	117730540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_117734842_117735908_117736016_117736096_117736277_117738635_117738743_117738897_117739110_117739652_117739881_117740532_117740713_117740942_117741096_117742480_117742616_117744553_117745024_117745190_117745381_117745473_117745625_117747956_117748184_117751500_117751736_117751899_117752173_117753394_117753675_117753800_117753974_117755148_117755340_117755739_117755959_117756082_117756193_117756277_117756417_117757216_117757466_117758813_117759044_117759384_117759632_117762374_117762598_117765192_117765348_117765586_117765805_117766344_117766507_117767035_117767214_117767316_117767548_117767830_117767970_117768080_117768226_117770908_117771194_117772276_117772526_117776060_117776182_117777587_117777748_117777975_117778124_117779594_117779705_117781596_117781799_117781966_117782110_117782961_117783117_117783695_117783861_117784049_117784247_117784589_117784790_117785256_117785398_117788293_117788396_117788481_117788570_117789005_117789125_117789711_117789874_117790007_117790139_117792672_117792943_117794258_117794361_117795033_117795259_117797413_117797588_117799883_117799982_117801752_117801826_117802226_117802353_117806023_117806238_117807245_117807305_117809961_117810099_117811642_117811799_117812111_117812276_117842427
ENSMUSG00000030655.16_3	chr7	-	5757	10	ISM	ENSMUSG00000030655.16	ENSMUST00000179331.9	12147	61	67486	-2729	-3685	-10	3prime_fragment	FALSE	canonical	3	89	junction_9	10.8023774246548	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGATAACAGTATCTAA	NA	False	NA	-14	True	AATAAA	-19	NA	117744707	117730540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_117734842_117735908_117736016_117736096_117736277_117738635_117738743_117738897_117739110_117739652_117739881_117740532_117740713_117740942_117741096_117742480_117742616_117744553
ENSMUSG00000030655.16_4	chr7	-	5038	6	ISM	ENSMUSG00000030655.16	ENSMUST00000179331.9	12147	61	72410	-2729	1239	-10	3prime_fragment	FALSE	canonical	3	101	junction_3	9.49526197637537	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGATAACAGTATCTAA	NA	False	NA	-14	True	AATAAA	-19	NA	117739783	117730540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_117734842_117735908_117736016_117736096_117736277_117738635_117738743_117738897_117739110_117739652
ENSMUSG00000030655.16_7	chr7	-	6805	14	ISM	ENSMUSG00000030655.16	ENSMUST00000179331.9	12147	61	60535	-2735	6829	-4	3prime_fragment	FALSE	canonical	3	89	junction_9	11.1121235567658	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACAGTATCTAAGCTCTG	NA	False	NA	-8	True	AATAAA	-25	NA	117751658	117730534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_117734842_117735908_117736016_117736096_117736277_117738635_117738743_117738897_117739110_117739652_117739881_117740532_117740713_117740942_117741096_117742480_117742616_117744553_117745024_117745190_117745381_117745473_117745625_117747956_117748184_117751500
ENSMUSG00000030655.16_9	chr7	-	4352	2	ISM	ENSMUSG00000030655.16	ENSMUST00000179331.9	12147	61	76234	-2729	-911	-10	3prime_fragment	FALSE	canonical	3	125	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGATAACAGTATCTAA	NA	False	NA	-14	True	AATAAA	-19	NA	117735959	117730540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_117734842_117735908
ENSMUSG00000030657.12_2	chr7	+	2231	1	ISM	ENSMUSG00000030657.12	ENSMUST00000032892.7	9020	12	290352	7	195839	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAAATCTCATTTTATGG	NA	False	NA	NA	False	AATAAA	-14	NA	117270565	117272796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_117270600_117272800
ENSMUSG00000030659.15_0	chr7	+	1662	14	FSM	ENSMUSG00000030659.15	ENSMUST00000032895.15	1685	14	18	5	3	-5	multi-exon	FALSE	canonical	3	41	junction_2	11.132340009308	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAGAACACACGTTTTT	NA	False	NA	NA	False	AATAAA	-39	NA	116103621	116139814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_116103720_116108689_116108861_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
ENSMUSG00000030659.15_1	chr7	+	1511	13	NIC	ENSMUSG00000030659.15	novel	1685	14	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	13.8283123417944	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACACGTTTTTATCTT	NA	False	NA	NA	False	AATAAA	-44	NA	116103606	116139819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_116103720_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
ENSMUSG00000030659.15_5	chr7	+	1570	13	FSM	ENSMUSG00000030659.15	ENSMUST00000183175.8	1913	13	-22	365	9	-365	multi-exon	FALSE	canonical	3	41	junction_2	11.5854314646552	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCCATTTTCATTTTGAA	NA	False	NA	NA	False	AATAAA	-14	NA	116103627	116139313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_116103720_116108689_116108861_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179
ENSMUSG00000030659.15_6	chr7	+	2963	13	NIC	ENSMUSG00000030659.15	novel	1685	14	NA	NA	-3	-32	intron_retention	FALSE	canonical	2	4	junction_9	20.6577601776077	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATTTGGAATAAAGGAAGA	NA	False	NA	NA	False	AATAAA	-12	NA	116103646	116139787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_116103720_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116129827_116132306_116132397_116135096_116135268_116139179_116139262_116139676
ENSMUSG00000030660.10_13	chr7	-	4006	10	ISM	ENSMUSG00000030660.10	ENSMUST00000170430.3	8044	33	91621	11	-9182	0	3prime_fragment	TRUE	canonical	3	61	junction_9	17.0489491367259	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGGAACTTGGCTGT	2287	False	NA	NA	False	ATTAAA	-39	NA	115951063	115936510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032
ENSMUSG00000030660.10_14	chr7	-	7392	32	ISM	ENSMUSG00000030660.10	ENSMUST00000170430.3	8044	33	25355	19	25345	-8	3prime_fragment	FALSE	canonical	3	53	junction_14	13.3923425400367	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTCTGAAATAAAGGAAC	NA	False	NA	NA	False	ATTAAA	-31	NA	116017329	115936518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032_115951203_115953212_115953350_115955469_115955600_115957870_115957964_115959230_115959336_115961281_115961463_115961792_115961888_115962583_115962678_115963662_115963852_115967278_115967425_115967981_115968094_115972029_115972198_115972962_115973086_115975457_115975669_115975748_115975795_115977854_115977999_115987078_115987143_115987276_115987357_115989678_115989791_115990507_115990629_115993435_115993594_116005094_116005199_116016687
ENSMUSG00000030660.10_16	chr7	-	5793	23	ISM	ENSMUSG00000030660.10	ENSMUST00000170430.3	8044	33	67140	23	-8119	-12	3prime_fragment	FALSE	canonical	3	53	junction_14	13.7189167825288	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATTTCTGAAATAAAG	NA	False	NA	NA	False	ATTAAA	-27	NA	115975544	115936522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032_115951203_115953212_115953350_115955469_115955600_115957870_115957964_115959230_115959336_115961281_115961463_115961792_115961888_115962583_115962678_115963662_115963852_115967278_115967425_115967981_115968094_115972029_115972198_115972962_115973086_115975457
ENSMUSG00000030660.10_18	chr7	-	1833	1	FSM	ENSMUSG00000030660.10	ENSMUST00000206805.2	3354	1	1509	12	1509	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATTTCTGAAATAAAG	NA	False	NA	NA	False	ATTAAA	-27	NA	115938355	115936522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_115936500_115938400
ENSMUSG00000030660.10_2	chr7	-	7721	33	FSM	ENSMUSG00000030660.10	ENSMUST00000170430.3	8044	33	6	317	-4	-306	multi-exon	FALSE	canonical	3	47	junction_32	13.7259733261434	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTTGCCTTAAATTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	116042678	115936816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032_115951203_115953212_115953350_115955469_115955600_115957870_115957964_115959230_115959336_115961281_115961463_115961792_115961888_115962583_115962678_115963662_115963852_115967278_115967425_115967981_115968094_115972029_115972198_115972962_115973086_115975457_115975669_115975748_115975795_115977854_115977999_115987078_115987143_115987276_115987357_115989678_115989791_115990507_115990629_115993435_115993594_116005094_116005199_116016687_116017817_116042538
ENSMUSG00000030660.10_20	chr7	-	4105	12	ISM	ENSMUSG00000030660.10	ENSMUST00000170430.3	8044	33	87086	317	11827	-306	3prime_fragment	FALSE	canonical	3	61	junction_9	15.5940230126484	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTTGCCTTAAATTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	115955598	115936816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032_115951203_115953212_115953350_115955469
ENSMUSG00000030660.10_3	chr7	-	8100	34	FSM	ENSMUSG00000030660.10	ENSMUST00000206219.2	5670	34	21	-2451	11	0	multi-exon	FALSE	canonical	3	22	junction_32	16.3820323083798	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGGAACTTGGCTGT	NA	False	NA	NA	False	ATTAAA	-39	NA	116042663	115936510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032_115951203_115953212_115953350_115955469_115955600_115957870_115957964_115959230_115959336_115961281_115961463_115961792_115961888_115962583_115962678_115963662_115963852_115967278_115967425_115967981_115968094_115972029_115972198_115972962_115973086_115975457_115975669_115975748_115975795_115977854_115977999_115987078_115987143_115987276_115987357_115989678_115989791_115990507_115990629_115993435_115993594_116005094_116005199_116016687_116017817_116041825_116041914_116042538
ENSMUSG00000030662.11_4	chr14	+	3927	26	FSM	ENSMUSG00000030662.11	ENSMUST00000032898.9	4518	26	-1	592	-1	-11	multi-exon	TRUE	canonical	3	890	junction_17	126.92017018583	2500	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACAAAGAGGCCTGTGT	1830	False	NA	7	True	AATAAA	-9	NA	121148634	121184819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
ENSMUSG00000030663.13_0	chr7	+	1435	5	FSM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	41	3	1	0	multi-exon	FALSE	canonical	3	1664	junction_2	78.2527954772224	1196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGATTGTGATGCCTT	NA	False	NA	26	True	AATAAA	-17	NA	115692576	115704442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446
ENSMUSG00000030669.14_1	chr7	-	935	5	FSM	ENSMUSG00000030669.14	ENSMUST00000032906.11	994	5	48	11	-2	-11	multi-exon	FALSE	canonical	3	77	junction_2	7.39932429347437	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCCTCAAGTGGAGTCT	2082	False	NA	-11	True	ATTAAA	-16	NA	114235544	114230723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235446
ENSMUSG00000030669.14_2	chr7	-	2821	4	NIC	ENSMUSG00000030669.14	novel	994	5	NA	NA	-15	-11	intron_retention	FALSE	canonical	3	87	junction_3	3.77123616632825	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCCTCAAGTGGAGTCT	2064	False	NA	-11	True	ATTAAA	-16	NA	114235562	114230723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_114231141_114231650_114233844_114234361_114234457_114235446
ENSMUSG00000030669.14_3	chr7	-	3315	3	FSM	ENSMUSG00000030669.14	ENSMUST00000205933.2	458	3	-5	-2852	1	-11	multi-exon	FALSE	canonical	3	87	junction_2	4	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCCTCAAGTGGAGTCT	2080	False	NA	-11	True	ATTAAA	-16	NA	114235546	114230723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_114233844_114234361_114234457_114235446
ENSMUSG00000030669.14_4	chr7	-	1080	2	FSM	ENSMUSG00000030669.14	ENSMUST00000205560.2	568	2	-426	-86	-426	-4	multi-exon	FALSE	canonical	3	95	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTGGAGTCTTTGCTGT	5320	False	NA	-4	True	ATTAAA	-23	NA	114232306	114230716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_114231141_114231650
ENSMUSG00000030669.14_5	chr7	-	417	1	ISM	ENSMUSG00000030669.14	ENSMUST00000032906.11	994	5	4452	11	740	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCCTCAAGTGGAGTCT	6486	False	NA	-11	True	ATTAAA	-16	NA	114231140	114230723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_114230700_114231100
ENSMUSG00000030669.14_7	chr7	-	983	5	NIC	ENSMUSG00000030669.14	novel	994	5	NA	NA	-12	-2	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	37.532485928859	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGAGTCTTTGCTGTTA	2067	False	NA	-2	True	ATTAAA	-25	NA	114235559	114230714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235422
ENSMUSG00000030671.10_0	chr7	+	4124	16	NNC	ENSMUSG00000030671.10	novel	719	4	NA	NA	-84	-1322	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	18.5021320092818	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCTATTGAACTTGCGT	NA	False	NA	1	True	AATAAA	-11	NA	114014431	114137164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_114014487_114090674_114090726_114093720_114093970_114097146_114097287_114105421_114105529_114107329_114107541_114108073_114108148_114117515_114117656_114118746_114118885_114120898_114121011_114122567_114122682_114126015_114126216_114129894_114130099_114131481_114131644_114133799_114134068_114135265
ENSMUSG00000030671.10_1	chr7	+	5300	16	FSM	ENSMUSG00000030671.10	ENSMUST00000032909.9	6573	16	-49	1322	-49	-1322	multi-exon	FALSE	canonical	3	54	junction_14	11.2573926327942	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCTATTGAACTTGCGT	NA	False	NA	1	True	AATAAA	-11	NA	114014466	114137164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_114015698_114090674_114090726_114093720_114093970_114097146_114097287_114105421_114105529_114107329_114107541_114108073_114108148_114117515_114117656_114118746_114118885_114120898_114121011_114122567_114122682_114126015_114126216_114129894_114130099_114131481_114131644_114133799_114134068_114135265
ENSMUSG00000030671.10_22	chr7	+	2643	5	ISM	ENSMUSG00000030671.10	ENSMUST00000032909.9	6573	16	111590	1322	5137	-1322	3prime_fragment	FALSE	canonical	3	54	junction_3	7.36121593216773	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCTATTGAACTTGCGT	5883	False	NA	1	True	AATAAA	-11	NA	114126105	114137164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_114126216_114129894_114130099_114131481_114131644_114133799_114134068_114135265
ENSMUSG00000030671.10_23	chr7	+	1999	2	ISM	ENSMUSG00000030671.10	ENSMUST00000032909.9	6573	16	119452	1322	12999	-1322	3prime_fragment	FALSE	canonical	3	56	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCTATTGAACTTGCGT	NA	False	NA	1	True	AATAAA	-11	NA	114133967	114137164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_114134068_114135265
ENSMUSG00000030672.13_0	chr7	+	812	8	NIC	ENSMUSG00000030672.13	novel	653	7	NA	NA	-36	0	combination_of_known_splicesites	FALSE	canonical	3	59	junction_2	781.490099431979	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	206	False	NA	31	True	AATAAA	-23	NA	126808025	126813459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_126808124_126808455_126808571_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_10	chr7	+	697	6	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1155	11	84	0	3prime_fragment	FALSE	canonical	3	600	junction_1	477.333007448678	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	4115	False	NA	31	True	AATAAA	-23	NA	126811934	126813459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_12	chr7	+	485	5	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1578	11	72	0	3prime_fragment	FALSE	canonical	3	1768	junction_4	19.9311314279947	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	4538	False	NA	31	True	AATAAA	-23	NA	126812357	126813459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_14	chr7	+	557	4	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1683	11	177	0	3prime_fragment	FALSE	canonical	3	1768	junction_3	20.2155056000751	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	4643	False	NA	31	True	AATAAA	-23	NA	126812462	126813459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_5	chr7	+	697	7	FSM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	58	11	58	0	multi-exon	FALSE	canonical	3	142	junction_1	683.213892000318	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	3018	False	NA	31	True	AATAAA	-23	NA	126810837	126813459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126810936_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_6	chr7	+	683	7	NIC	ENSMUSG00000030672.13	novel	268	4	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	3	184	junction_1	671.232365793612	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	3976	False	NA	31	True	AATAAA	-23	NA	126811795	126813459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_126811880_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030674.6_0	chr7	-	1704	4	FSM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	183	163	-2	-163	multi-exon	FALSE	canonical	3	73	junction_2	9.46337971105226	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGGCACTTCTTTGTTG	NA	False	NA	-15	True	NA	NA	NA	126721215	126706448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126707414_126707505_126707638_126707880_126708417_126721144
ENSMUSG00000030674.6_1	chr7	-	760	1	ISM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	14198	155	13990	-155	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTGTTGTTGTTGTT	648	False	NA	-7	True	NA	NA	NA	126707200	126706440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126706400_126707200
ENSMUSG00000030674.6_3	chr7	-	2203	2	ISM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	12161	657	11953	-657	intron_retention	FALSE	canonical	3	87	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAATGAGTGGTTGGTAA	NA	False	NA	0	True	NA	NA	NA	126709237	126706942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126707414_126707505
ENSMUSG00000030677.9_1	chr7	-	2075	14	FSM	ENSMUSG00000030677.9	ENSMUST00000032915.8	2115	14	39	1	-23	0	multi-exon	FALSE	canonical	3	689	junction_8	49.8885147636753	899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	7964	False	NA	-7	True	AATACA	-12	NA	126641604	126626903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
ENSMUSG00000030677.9_16	chr7	-	2198	13	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-20	0	intron_retention	FALSE	canonical	3	712	junction_7	45.9422191453569	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	7967	False	NA	-7	True	AATACA	-12	NA	126641601	126626903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
ENSMUSG00000030678.8_0	chr7	-	915	1	ISM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	3469	13	2075	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACTTGTCTCTGA	3725	False	NA	-40	True	AATAAA	-5	NA	126622229	126621314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126621300_126622200
ENSMUSG00000030678.8_1	chr7	-	2618	5	FSM	ENSMUSG00000030678.8	ENSMUST00000032916.6	2347	5	-280	9	-160	-8	multi-exon	FALSE	canonical	3	463	junction_1	136.928813622261	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACTTGTCTCTGA	50	False	NA	-40	True	AATAAA	-5	NA	126625904	126621314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475_126625327_126625399
ENSMUSG00000030678.8_2	chr7	-	2418	5	ISM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	292	13	218	-8	intron_retention	FALSE	canonical	0	0	junction_1	321.496014749794	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACTTGTCTCTGA	548	False	NA	-40	True	AATAAA	-5	NA	126625406	126621314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126624475
ENSMUSG00000030678.8_25	chr7	-	2285	6	FSM	ENSMUSG00000030678.8	ENSMUST00000206254.2	2282	6	-11	8	2	-8	multi-exon	FALSE	canonical	3	90	junction_5	257.403496479749	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACTTGTCTCTGA	NA	False	NA	-40	True	AATAAA	-5	NA	126626207	126621314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475_126625327_126625399_126625487_126626122
ENSMUSG00000030678.8_4	chr7	-	2845	6	FSM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	-208	13	-162	-8	multi-exon	FALSE	canonical	0	0	junction_1	289.408085581588	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACTTGTCTCTGA	48	False	NA	-40	True	AATAAA	-5	NA	126625906	126621314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399
ENSMUSG00000030678.8_7	chr7	-	2857	6	NNC	ENSMUSG00000030678.8	novel	2650	6	NA	NA	-169	-8	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_1	162.349006772447	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACTTGTCTCTGA	41	False	NA	-40	True	AATAAA	-5	NA	126625913	126621314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_126622341_126622648_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399
ENSMUSG00000030678.8_8	chr7	-	2193	4	ISM	ENSMUSG00000030678.8	ENSMUST00000032916.6	2347	5	218	9	218	-8	intron_retention	FALSE	canonical	3	463	junction_1	152.057737572133	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACTTGTCTCTGA	548	False	NA	-40	True	AATAAA	-5	NA	126625406	126621314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475
ENSMUSG00000030678.8_9	chr7	-	2423	5	NNC	ENSMUSG00000030678.8	novel	2650	6	NA	NA	218	-8	intron_retention	FALSE	canonical	3	387	junction_1	181.38770630889	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACTTGTCTCTGA	548	False	NA	-40	True	AATAAA	-5	NA	126625406	126621314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_126622341_126622648_126622879_126623615_126623788_126624047_126624112_126624475
ENSMUSG00000030680.7_0	chr7	-	2340	1	Genic_Genomic	ENSMUSG00000107068.2_ENSMUSG00000030680.7_ENSMUSG00000092534.9	novel	NA	NA	NA	NA	46	101	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	9511	False	NA	99	True	NA	NA	NA	126616443	126614103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_126614100_126616400
ENSMUSG00000030681.19_0	chr7	-	2772	15	FSM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	56	9	-15	-9	multi-exon	FALSE	canonical	3	72	junction_9	19.4401226165613	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATTTATGTTTCTTTTT	NA	False	NA	-9	True	AATAAA	-12	NA	126613737	126586040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126613690
ENSMUSG00000030681.19_13	chr7	-	1007	5	ISM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	24747	10	21991	-10	3prime_fragment	FALSE	canonical	3	108	junction_4	10.7004672795163	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACATTTATGTTTCTTTT	5978	False	NA	-10	True	AATAAA	-11	NA	126589046	126586041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717
ENSMUSG00000030681.19_20	chr7	-	2328	12	ISM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	16076	9	13320	-9	3prime_fragment	FALSE	canonical	3	72	junction_9	20.1814086772541	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATTTATGTTTCTTTTT	3625	False	NA	-9	True	AATAAA	-12	NA	126597717	126586040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644
ENSMUSG00000030681.19_3	chr7	-	2822	15	NIC	ENSMUSG00000030681.19	novel	2837	15	NA	NA	-32	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	31.9071516517945	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATTTATGTTTCTTTTT	NA	False	NA	-9	True	AATAAA	-12	NA	126611069	126586040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126610972
ENSMUSG00000030682.5_0	chr7	+	1854	6	FSM	ENSMUSG00000030682.5	ENSMUST00000032920.5	1974	6	451	-331	-13	-6	multi-exon	FALSE	canonical	3	352	junction_2	28.9344085821708	446	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGGATGGTTTTCTCAG	NA	False	NA	16	True	NA	NA	NA	126575536	126579665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578493_126578576_126578706
ENSMUSG00000030685.6_0	chr7	+	1661	6	FSM	ENSMUSG00000030685.6	ENSMUST00000032924.6	1676	6	1	14	1	-14	multi-exon	FALSE	canonical	3	174	junction_2	8.49470423263812	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTGAAGGTCTGCTGCT	NA	False	NA	11	True	AATAAA	-3	NA	126528051	126544789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126528471_126529804_126529975_126540504_126540595_126540682_126540736_126541318_126541515_126544056
ENSMUSG00000030685.6_9	chr7	+	2302	5	ISM	ENSMUSG00000030685.6	ENSMUST00000032924.6	1676	6	696	12	-346	-12	3prime_fragment	FALSE	canonical	3	174	junction_1	5.53962995154008	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGAAGGTCTGCTGCTGA	NA	False	NA	13	True	AATAAA	-5	NA	126528746	126544791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_126529975_126540504_126540595_126540682_126540736_126541318_126541515_126544056
ENSMUSG00000030688.16_0	chr7	+	1404	7	FSM	ENSMUSG00000030688.16	ENSMUST00000032927.14	1400	7	-5	1	-5	-1	multi-exon	TRUE	canonical	3	28	junction_2	26.7581763205193	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCTCTTTGTGCCTGC	NA	False	NA	6	True	AATAAA	-17	NA	100970314	100995514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100970560_100970920_100971241_100991704_100991853_100992390_100992495_100993123_100993242_100994841_100994895_100995098
ENSMUSG00000030688.16_3	chr7	+	514	3	ISM	ENSMUSG00000030688.16	ENSMUST00000174140.2	649	5	1487	-169	1487	-2	3prime_fragment	FALSE	canonical	3	81	junction_1	8	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCAGCTCTTTGTGCCTG	5995	False	NA	5	True	AATAAA	-16	NA	100993195	100995513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100993242_100994841_100994895_100995098
ENSMUSG00000030689.16_1	chr7	-	1132	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106343.3	1973	7	-7	848	-1	0	multi-exon	FALSE	canonical	3	695	junction_1	102.030496530313	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9187	False	NA	-4	True	ATTAAA	-15	NA	126461017	126451604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000030689.16_7	chr7	-	1399	8	NIC	ENSMUSG00000030689.16	novel	1741	7	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_7	292.908775936141	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9926	False	NA	-4	True	ATTAAA	-15	NA	126461540	126451604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876_126461190_126461445
ENSMUSG00000030689.16_9	chr7	-	1225	8	NIC	ENSMUSG00000030689.16	novel	1973	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	206	junction_2	316.419574202949	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9186	False	NA	-4	True	ATTAAA	-15	NA	126461018	126451604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126452164_126452660_126452753_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000030691.16_0	chr7	+	4336	20	FSM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	-17	-3	-17	3	multi-exon	FALSE	canonical	0	0	junction_17	7.64481610612047	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATGAAATTAAGTTTT	NA	False	NA	-4	True	TATAAA	-13	NA	100757964	100933592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100758247_100759945_100760044_100788357_100788404_100826350_100826428_100835594_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100883078_100883202_100893327_100893424_100899651_100899769_100902736_100902842_100908818_100908981_100920776_100920912_100925824_100925909_100926032_100926211_100926616_100926838_100927557_100927688_100927778_100927862_100931656
ENSMUSG00000030691.16_10	chr7	+	1471	1	ISM	ENSMUSG00000030691.16	ENSMUST00000032931.9	4453	21	174182	20	23246	3	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATGAAATTAAGTTTT	NA	False	NA	-4	True	TATAAA	-13	NA	100932121	100933592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100932100_100933600
ENSMUSG00000030691.16_2	chr7	+	1912	14	ISM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	-28	12481	14	9548	5prime_fragment	FALSE	canonical	3	23	junction_6	4.10656855847358	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATATACTGGGTCTCTG	NA	False	NA	NA	False	ATTAAA	-29	NA	100757953	100921108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100758247_100759945_100760044_100788357_100788404_100826350_100826428_100835594_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100883078_100883202_100893327_100893424_100899651_100899769_100902736_100902842_100908818_100908981_100920776
ENSMUSG00000030691.16_3	chr7	+	3854	19	ISM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	2034	127	1927	-127	3prime_fragment	FALSE	canonical	0	0	junction_16	7.8443578843194	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTCCAGGCCGAATAACC	NA	False	NA	NA	False	AATAAA	-16	NA	100760015	100933462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100760044_100788357_100788404_100826350_100826428_100835594_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100883078_100883202_100893327_100893424_100899651_100899769_100902736_100902842_100908818_100908981_100920776_100920912_100925824_100925909_100926032_100926211_100926616_100926838_100927557_100927688_100927778_100927862_100931656
ENSMUSG00000030691.16_4	chr7	+	3933	17	ISM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	68365	-22	-13103	-1	3prime_fragment	FALSE	canonical	0	0	junction_14	8.25284042012203	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGTGTCCTGATAAAGA	NA	False	NA	15	True	AATAAA	-17	NA	100826346	100933611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100826428_100835594_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100883078_100883202_100893327_100893424_100899651_100899769_100902736_100902842_100908818_100908981_100920776_100920912_100925824_100925909_100926032_100926211_100926616_100926838_100927557_100927688_100927778_100927862_100931656
ENSMUSG00000030691.16_5	chr7	+	3793	16	ISM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	77647	3	-3821	-3	3prime_fragment	FALSE	canonical	0	0	junction_13	8.5124745064066	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAATAAAAAATGAAATTA	1617	False	NA	-10	True	TATAAA	-7	NA	100835628	100933586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100883078_100883202_100893327_100893424_100899651_100899769_100902736_100902842_100908818_100908981_100920776_100920912_100925824_100925909_100926032_100926211_100926616_100926838_100927557_100927688_100927778_100927862_100931656
ENSMUSG00000030691.16_6	chr7	+	3091	10	ISM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	141724	3	-343	-3	3prime_fragment	FALSE	canonical	0	0	junction_7	9.45685459153476	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAATAAAAAATGAAATTA	5203	False	NA	-10	True	TATAAA	-7	NA	100899705	100933586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100899769_100902736_100902842_100908818_100908981_100920776_100920912_100925824_100925909_100926032_100926211_100926616_100926838_100927557_100927688_100927778_100927862_100931656
ENSMUSG00000030691.16_7	chr7	+	4357	9	ISM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	143426	3	1359	-3	3prime_fragment	FALSE	canonical	0	0	junction_6	9.66953980290686	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAATAAAAAATGAAATTA	6905	False	NA	-10	True	TATAAA	-7	NA	100901407	100933586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100902842_100908818_100908981_100920776_100920912_100925824_100925909_100926032_100926211_100926616_100926838_100927557_100927688_100927778_100927862_100931656
ENSMUSG00000030691.16_9	chr7	+	2238	4	ISM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	168761	3	17867	-3	3prime_fragment	FALSE	canonical	0	0	junction_1	13.7679176187089	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAATAAAAAATGAAATTA	NA	False	NA	-10	True	TATAAA	-7	NA	100926742	100933586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100926838_100927557_100927688_100927778_100927862_100931656
ENSMUSG00000030693.11_0	chr7	+	1338	6	FSM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	33	2	33	-2	multi-exon	FALSE	canonical	2	31	junction_4	14.5134420452214	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTCCAATGTGTGTGCCT	388	False	NA	7	True	ATTAAA	-14	NA	43430491	43434832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43430571_43430922_43431050_43432159_43432344_43432880_43433156_43433739_43433874_43434293
ENSMUSG00000030693.11_1	chr7	+	1512	5	ISM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	186	27	186	-27	3prime_fragment	FALSE	canonical	2	31	junction_3	16.2230545829076	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACTGATTAAACACTACCA	541	False	NA	-18	True	NA	NA	NA	43430644	43434807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43431050_43432159_43432344_43432880_43433156_43433739_43433874_43434293
ENSMUSG00000030693.11_2	chr7	+	1148	4	ISM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	1687	0	1687	0	3prime_fragment	FALSE	canonical	2	31	junction_2	18.6726180988812	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCAATGTGTGTGCCTCT	57	False	NA	9	True	ATTAAA	-16	NA	43432145	43434834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43432344_43432880_43433156_43433739_43433874_43434293
ENSMUSG00000030695.17_0	chr7	-	1437	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	72	2	-12	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	16097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	-5	True	AATAAA	-16	NA	126398354	126394407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
ENSMUSG00000030695.17_3	chr7	-	1590	10	FSM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	-41	0	-12	0	multi-exon	FALSE	canonical	3	862	junction_9	8041.23258932084	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	-5	True	AATAAA	-16	NA	126398354	126394407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216
ENSMUSG00000030697.8_0	chr7	-	1248	8	FSM	ENSMUSG00000030697.8	ENSMUST00000206570.2	1400	8	129	23	-64	-23	multi-exon	FALSE	canonical	3	2424	junction_1	142.291307979548	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTCTAATAAAAGAAGAAAA	5355	False	NA	NA	False	GATAAA	-25	NA	126391383	126385062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232
ENSMUSG00000030697.8_1	chr7	-	1335	9	FSM	ENSMUSG00000030697.8	ENSMUST00000032936.8	1359	9	0	24	0	-22	multi-exon	FALSE	canonical	3	1828	junction_8	282.244574792856	1350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTCTAATAAAAGAAGAAAAA	5070	False	NA	NA	False	GATAAA	-26	NA	126391668	126385061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232_126391396_126391594
ENSMUSG00000030701.18_0	chr7	-	1796	7	FSM	ENSMUSG00000030701.18	ENSMUST00000107044.10	1806	7	12	-2	12	0	multi-exon	FALSE	canonical	3	13	junction_3	4.3365372770859	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGCTTTGCTTGTTTTG	NA	False	NA	0	True	AATAAA	-18	NA	100307651	100293104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_100294277_100294776_100294877_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100307499
ENSMUSG00000030703.9_0	chr7	+	1076	10	FSM	ENSMUSG00000030703.9	ENSMUST00000032944.9	1148	10	70	2	70	-2	multi-exon	TRUE	canonical	1	3	junction_3	2.43938871112224	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAGTTCATGGAACAAG	NA	False	NA	10	True	AATAAA	-16	NA	126365575	126374815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126365782_126366073_126366117_126366346_126366483_126366562_126366609_126366738_126366858_126366934_126367025_126367741_126367876_126370159_126370220_126370333_126370386_126374625
ENSMUSG00000030704.15_1	chr7	+	3063	8	FSM	ENSMUSG00000030704.15	ENSMUST00000098252.5	3110	8	41	6	41	-6	multi-exon	FALSE	canonical	3	254	junction_3	204.582800960832	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCACACGGTTCACATTC	NA	False	NA	5	True	AATAAA	-13	NA	100256937	100290469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100257501_100275758_100275818_100277610_100277665_100278872_100278979_100280948_100281061_100283851_100283946_100285901_100285969_100288461
ENSMUSG00000030704.15_3	chr7	+	3053	8	FSM	ENSMUSG00000030704.15	ENSMUST00000032946.10	3214	8	155	6	51	-6	multi-exon	FALSE	canonical	3	462	junction_3	112.157687827342	956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCACACGGTTCACATTC	NA	False	NA	5	True	AATAAA	-13	NA	100256947	100290469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100257501_100275758_100275818_100277610_100277665_100279044_100279151_100280948_100281061_100283851_100283946_100285901_100285969_100288461
ENSMUSG00000030704.15_30	chr7	+	1431	1	ISM	ENSMUSG00000030704.15	ENSMUST00000107048.8	2617	8	32425	3	5487	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACGGTTCACATTCTTT	3463	False	NA	8	True	AATAAA	-16	NA	100289041	100290472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100289000_100290500
ENSMUSG00000030706.18_0	chr7	-	908	8	FSM	ENSMUSG00000030706.18	ENSMUST00000150042.8	4285	8	7	3370	2	116	multi-exon	FALSE	canonical	3	320	junction_4	76.5855530682877	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGTGTGTGTTTGTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	100232302	100198327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100232196
ENSMUSG00000030706.18_12	chr7	-	2144	1	FSM	ENSMUSG00000030706.18	ENSMUST00000208916.2	2144	1	-26	26	1	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	100232308	100230164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_100230200_100232300
ENSMUSG00000030706.18_5	chr7	-	915	8	NIC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	-32	116	combination_of_known_junctions	FALSE	canonical	1	13	junction_7	166.611487464406	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGTGTGTGTTTGTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	100256877	100198327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100256764
ENSMUSG00000030707.16_0	chr7	-	1596	11	FSM	ENSMUSG00000030707.16	ENSMUST00000032949.14	1660	11	62	2	0	-2	multi-exon	FALSE	canonical	0	0	junction_5	5.95315042645489	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCTCAGACTCCGGTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	126303926	126298946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126299158_126299428_126299645_126299755_126299814_126299911_126300058_126300163_126300269_126300461_126300582_126300689_126300875_126300961_126301092_126301177_126301301_126302147_126302347_126303823
ENSMUSG00000030707.16_1	chr7	-	846	5	ISM	ENSMUSG00000030707.16	ENSMUST00000106364.8	1747	11	3013	3	20	-3	3prime_fragment	FALSE	canonical	3	11	junction_2	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTCTCAGACTCCGGTGA	NA	False	NA	NA	False	AATAAA	-18	NA	126300379	126298947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126299158_126299428_126299645_126299755_126299814_126299911_126300058_126300163
ENSMUSG00000030708.15_0	chr7	-	812	6	ISM	ENSMUSG00000030708.15	ENSMUST00000154516.3	905	7	2994	-62	-21	2	3prime_fragment	FALSE	canonical	3	47	junction_4	7.5736384915046	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTATGATGGGAAGTGAGT	NA	False	NA	-7	True	AATAAA	-15	NA	100161009	100152225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_100152518_100153122_100153200_100153713_100153828_100155288_100155403_100159901_100160064_100160956
ENSMUSG00000030708.15_1	chr7	-	2269	7	ISM	ENSMUSG00000030708.15	ENSMUST00000130534.8	1159	8	1595	-1299	-23	-6	3prime_fragment	FALSE	canonical	3	16	junction_5	19.1020650425259	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCATGTTACTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	100161011	100150928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_100152518_100153122_100153200_100153713_100153828_100155288_100155403_100156582_100156741_100159901_100160064_100160956
ENSMUSG00000030714.15_0	chr7	+	1157	10	FSM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	8	147	5	-1	multi-exon	FALSE	canonical	3	419	junction_3	31.8433666561813	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTCTCCTGGGCCTCA	119	False	NA	32	True	AATAAA	-15	NA	126248488	126271950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
ENSMUSG00000030714.15_1	chr7	+	1408	9	ISM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	8	147	5	-1	intron_retention	FALSE	canonical	3	419	junction_3	30.3840007240653	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTCTCCTGGGCCTCA	119	False	NA	32	True	AATAAA	-15	NA	126248488	126271950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327
ENSMUSG00000030717.10_0	chr7	-	638	3	FSM	ENSMUSG00000030717.10	ENSMUST00000032961.4	829	3	189	2	-12	1	multi-exon	FALSE	canonical	3	3716	junction_2	16	949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTTTGGCGTGTGTTGT	NA	False	NA	-10	True	AATAAA	-45	NA	126224659	126222422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126222752_126224061_126224206_126224494
ENSMUSG00000030717.10_2	chr7	-	929	2	FSM	ENSMUSG00000030717.10	ENSMUST00000131174.2	2449	2	1523	-3	-12	0	multi-exon	FALSE	canonical	3	3748	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGGCGTGTGTTGTGT	NA	False	NA	-8	True	AATAAA	-16	NA	126224659	126222420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126222752_126224061
ENSMUSG00000030718.10_0	chr7	-	2396	14	FSM	ENSMUSG00000030718.10	ENSMUST00000032963.10	2772	14	374	2	1	-2	multi-exon	FALSE	canonical	0	0	junction_12	101.852195962999	586	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTCTGAGGAGCTGTC	NA	False	NA	-10	True	AATAAA	-15	NA	100021140	99975945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254_99984385_99987576_99987701_99990237_99990304_99991052_99991144_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004009_100004474_100004569_100020929
ENSMUSG00000030720.17_0	chr7	-	1791	16	ISM	ENSMUSG00000030720.17	ENSMUST00000116269.9	2487	17	736	686	10	0	3prime_fragment	FALSE	canonical	3	45	junction_15	32.0638252379358	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126182716	126171257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474
ENSMUSG00000030720.17_22	chr7	-	1774	17	FSM	ENSMUSG00000030720.17	ENSMUST00000116269.9	2487	17	27	686	27	0	multi-exon	FALSE	canonical	3	21	junction_16	42.5708508694623	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126183425	126171257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345
ENSMUSG00000030720.17_7	chr7	-	1596	14	FSM	ENSMUSG00000030720.17	ENSMUST00000098036.9	1571	14	-27	2	9	-2	multi-exon	FALSE	canonical	3	16	junction_11	40.0146422904558	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTTTTGTGCAGTCTC	NA	False	NA	-4	True	AATAAA	-16	NA	126182389	126171259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126180817_126180915_126181935_126182015_126182171
ENSMUSG00000030720.17_8	chr7	-	1677	15	FSM	ENSMUSG00000030720.17	ENSMUST00000032962.11	2386	15	22	687	1	-1	multi-exon	FALSE	canonical	3	116	junction_11	19.7815880173912	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTTTTGTGCAGTCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	126182397	126171258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171
ENSMUSG00000030720.17_9	chr7	-	1749	14	NIC	ENSMUSG00000030720.17	novel	2386	15	NA	NA	14	-1	intron_retention	FALSE	canonical	3	116	junction_10	20.5074672501933	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTTTTGTGCAGTCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	126182384	126171258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171
ENSMUSG00000030722.8_0	chr7	-	1308	1	ISM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	12573	3	6393	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACTTGCTGGTTTCTGTC	NA	False	NA	-9	True	AATAAA	-17	NA	125983336	125982028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_125982000_125983300
ENSMUSG00000030722.8_1	chr7	-	3368	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	17	3	17	-3	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACTTGCTGGTTTCTGTC	NA	False	NA	-9	True	AATAAA	-17	NA	125995892	125982028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
ENSMUSG00000030722.8_8	chr7	-	2489	3	ISM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	9030	3	2850	-3	3prime_fragment	FALSE	canonical	3	268	junction_1	0.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACTTGCTGGTTTCTGTC	NA	False	NA	-9	True	AATAAA	-17	NA	125986879	125982028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_125984312_125986573_125986684_125986783
ENSMUSG00000030725.5_0	chr7	+	1170	3	NNC	ENSMUSG00000030725.5	novel	1663	2	NA	NA	-3	278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	41	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATGTCTCAAGTTTGAT	NA	False	NA	NA	False	AATAAA	-25	NA	99808480	99810139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_99808955_99809380_99809667_99809729
ENSMUSG00000030726.17_1	chr7	-	2981	12	FSM	ENSMUSG00000030726.17	ENSMUST00000032969.14	3069	12	86	2	-13	-2	multi-exon	FALSE	canonical	3	502	junction_4	47.2898570362863	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCTGGTGCGAGTTGGA	NA	False	NA	-6	True	AATAAA	-16	NA	99770686	99731319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
ENSMUSG00000030726.17_3	chr7	-	2982	12	NNC	ENSMUSG00000030726.17	novel	3069	12	NA	NA	-12	-3	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_4	154.789059343876	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCTCTGGTGCGAGTTGG	NA	False	NA	-7	True	AATAAA	-15	NA	99770685	99731320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742692_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
ENSMUSG00000030727.13_2	chr7	+	2218	13	FSM	ENSMUSG00000030727.13	ENSMUST00000106407.9	2234	13	15	1	15	-1	multi-exon	FALSE	canonical	3	161	junction_4	15.3541525327841	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCAGTTGCCTTGTGCCTG	NA	False	NA	11	True	AATAAA	-14	NA	126028252	126045072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126043602_126043694_126043751_126043991_126044109_126044468
ENSMUSG00000030727.13_8	chr7	+	2202	12	NIC	ENSMUSG00000030727.13	novel	2234	13	NA	NA	-16	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	55.1880331980083	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTCAGTTGCCTTGTGCC	NA	False	NA	9	True	AATAAA	-12	NA	126028254	126045070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043694_126043751_126043991_126044109_126044468
ENSMUSG00000030729.18_0	chr7	+	2325	14	FSM	ENSMUSG00000030729.18	ENSMUST00000084935.11	8834	14	232	6277	-50	-4819	multi-exon	TRUE	canonical	2	3	junction_8	2.32557176274323	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATTTGGATATGAGTC	NA	False	NA	NA	False	AATAGA	-19	NA	99876832	99921797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_99877242_99899498_99899667_99901391_99901499_99902439_99902525_99904740_99904825_99909090_99909285_99910806_99910997_99911272_99911371_99912117_99912296_99915871_99915966_99916692_99916823_99917323_99917514_99919534_99919669_99921533
ENSMUSG00000030729.18_2	chr7	+	2958	1	ISM	ENSMUSG00000030729.18	ENSMUST00000084935.11	8834	14	48514	2	48198	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGCATGAGTGTCTATGC	9324	False	NA	12	True	AATAAA	-12	NA	99925114	99928072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_99925100_99928100
ENSMUSG00000030731.14_0	chr7	+	2476	11	FSM	ENSMUSG00000030731.14	ENSMUST00000118962.8	2494	11	17	1	-8	-1	multi-exon	FALSE	canonical	2	9	junction_1	3.88458491991101	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCACCTGTCTCCCTGG	NA	False	NA	15	True	AATAAA	-17	NA	44033542	44049452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44033601_44034229_44034374_44035379_44035546_44039919_44040449_44041822_44042196_44042772_44042992_44044833_44044955_44045062_44045235_44045326_44045460_44048509_44048578_44048959
ENSMUSG00000030731.14_1	chr7	+	2513	11	FSM	ENSMUSG00000030731.14	ENSMUST00000118831.8	2627	11	-52	166	0	-8	multi-exon	FALSE	canonical	0	0	junction_2	6.15142259969188	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCTCATCCCACCTGTC	NA	False	NA	8	True	AATAAA	-10	NA	44033525	44049445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44033601_44034229_44034374_44035352_44035546_44039919_44040449_44041822_44042196_44042772_44042992_44044833_44044955_44045062_44045235_44045326_44045460_44048509_44048578_44048959
ENSMUSG00000030731.14_6	chr7	+	5336	8	NIC	ENSMUSG00000030731.14	novel	2096	10	NA	NA	127	-6	intron_retention	FALSE	canonical	2	10	junction_2	3.23879544250132	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTCATCCCACCTGTCTC	NA	False	NA	10	True	AATAAA	-12	NA	44034154	44049447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44035546_44039919_44040449_44041822_44042196_44042772_44044955_44045062_44045235_44045326_44045460_44048509_44048578_44048959
ENSMUSG00000030731.14_7	chr7	+	1048	5	ISM	ENSMUSG00000030731.14	ENSMUST00000120262.2	2096	10	10482	-266	10482	0	3prime_fragment	FALSE	canonical	3	17	junction_1	1.4790199457749	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCACCTGTCTCCCTGGG	NA	False	NA	16	True	AATAAA	-18	NA	44044773	44049453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_44044955_44045062_44045235_44045326_44045460_44048509_44048578_44048959
ENSMUSG00000030733.11_0	chr7	-	2953	10	NIC	ENSMUSG00000030733.11	novel	3089	11	NA	NA	6	-1	combination_of_known_junctions	FALSE	canonical	3	197	junction_2	41.0918873973506	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGATGGCTGTGGCTGA	8210	False	NA	-7	True	AATAAA	-22	NA	126074269	126066171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126074167
ENSMUSG00000030733.11_15	chr7	-	3351	10	FSM	ENSMUSG00000030733.11	ENSMUST00000032978.8	3393	10	38	4	-15	-1	multi-exon	FALSE	canonical	3	29	junction_9	100.767548176147	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGATGGCTGTGGCTGA	8242	False	NA	-7	True	AATAAA	-22	NA	126074237	126066171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126066946_126067121_126067222_126067591_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126073790
ENSMUSG00000030733.11_2	chr7	-	3311	10	FSM	ENSMUSG00000030733.11	ENSMUST00000205340.2	3366	10	52	3	12	-1	multi-exon	FALSE	canonical	3	29	junction_9	82.2103595046059	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGATGGCTGTGGCTGA	8229	False	NA	-7	True	AATAAA	-22	NA	126074250	126066171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126073790
ENSMUSG00000030733.11_22	chr7	-	4471	10	ISM	ENSMUSG00000030733.11	ENSMUST00000205440.2	3089	11	-5	3	-5	0	intron_retention	FALSE	canonical	3	19	junction_9	85.0607625955313	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGGCTGTGGCTGATAT	8212	False	NA	-4	True	AATAAA	-25	NA	126074267	126066168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126072650
ENSMUSG00000030733.11_6	chr7	-	3004	10	NIC	ENSMUSG00000030733.11	novel	3393	10	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	3	53	junction_2	75.3988571154828	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGATGGCTGTGGCTGA	8212	False	NA	-7	True	AATAAA	-22	NA	126074267	126066171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126066946_126067121_126067222_126067591_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126074167
ENSMUSG00000030733.11_7	chr7	-	2404	9	ISM	ENSMUSG00000030733.11	ENSMUST00000205440.2	3089	11	2443	6	421	-1	3prime_fragment	FALSE	canonical	3	197	junction_2	37.3528362376942	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGATGGCTGTGGCTGA	NA	False	NA	-7	True	AATAAA	-22	NA	126071819	126066171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244
ENSMUSG00000030733.11_8	chr7	-	2569	9	ISM	ENSMUSG00000030733.11	ENSMUST00000032978.8	3393	10	2344	4	309	-1	3prime_fragment	FALSE	canonical	3	53	junction_2	78.2606821782177	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGATGGCTGTGGCTGA	NA	False	NA	-7	True	AATAAA	-22	NA	126071931	126066171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126066946_126067121_126067222_126067591_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244
ENSMUSG00000030735.7_0	chr8	-	1655	1	FSM	ENSMUSG00000030735.7	ENSMUST00000032981.7	1356	1	-68	-231	-68	231	mono-exon	FALSE	NA	NA	NA	NA	NA	300	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	6271	False	NA	NA	False	AATAAA	-13	NA	67968310	67966655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_67966700_67968300
ENSMUSG00000030737.18_0	chr7	-	3912	14	FSM	ENSMUSG00000030737.18	ENSMUST00000107088.8	4369	14	433	24	433	-24	multi-exon	FALSE	canonical	0	0	junction_5	2.1483446221183	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATGACTCTTCCACGACA	NA	False	NA	NA	False	ATTAAA	-12	NA	99355935	99307619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_99309384_99310310_99310432_99310724_99310790_99311653_99311818_99313985_99314152_99316098_99316457_99320156_99320251_99331901_99332093_99334682_99334782_99335090_99335325_99338069_99338233_99339638_99339777_99340963_99341101_99355717
ENSMUSG00000030738.12_0	chr7	-	2898	21	FSM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	26	459	26	-459	multi-exon	FALSE	canonical	3	1924	junction_14	277.99846672239	4738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATAGTTGCTTGTTGTC	NA	False	NA	-11	True	ATTAAA	-15	NA	126165557	126146085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
ENSMUSG00000030738.12_2	chr7	-	2994	20	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	59	458	6	-458	intron_retention	FALSE	canonical	3	1924	junction_14	261.383841247645	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATAGTTGCTTGTTGTCT	NA	False	NA	-10	True	ATTAAA	-16	NA	126165524	126146084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
ENSMUSG00000030739.19_0	chr7	-	4129	24	NIC	ENSMUSG00000030739.19	novel	6390	40	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	2	5	junction_23	21.0276620404758	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCATGGCTGCGTTTCTA	NA	False	NA	-4	True	AATAAA	-14	NA	44282209	44255229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44280137_44280270_44280974_44281084_44281806_44281968_44282174
ENSMUSG00000030739.19_1	chr7	-	3736	21	NNC	ENSMUSG00000030739.19	novel	6390	40	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_20	20.5294909824866	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGGCTGCGTTTCTAAT	NA	False	NA	-2	True	AATAAA	-16	NA	44280034	44255227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44279992
ENSMUSG00000030739.19_12	chr7	-	959	2	ISM	ENSMUSG00000030739.19	ENSMUST00000208044.2	1438	7	7095	0	7095	0	3prime_fragment	FALSE	canonical	3	83	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	711	False	NA	-3	True	AATAAA	-15	NA	44256454	44255228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44255788_44256054
ENSMUSG00000030739.19_13	chr7	-	4994	28	ISM	ENSMUSG00000030739.19	ENSMUST00000107899.10	6390	40	26808	2	-5908	0	3prime_fragment	FALSE	canonical	2	8	junction_26	22.3181263871343	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44288117	44255228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44280137_44280270_44280974_44281084_44281806_44281968_44282358_44282429_44282898_44283021_44283782_44283971_44287188_44287304_44287713
ENSMUSG00000030739.19_17	chr7	-	3055	16	ISM	ENSMUSG00000030739.19	ENSMUST00000107899.10	6390	40	38274	2	3355	0	3prime_fragment	FALSE	canonical	3	29	junction_14	19.8113323350271	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44276651	44255228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435
ENSMUSG00000030739.19_18	chr7	-	1670	6	ISM	ENSMUSG00000030739.19	ENSMUST00000208044.2	1438	7	-12	0	-12	0	intron_retention	FALSE	canonical	3	68	junction_5	8.68562030024339	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44263561	44255228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065
ENSMUSG00000030739.19_19	chr7	-	4096	23	ISM	ENSMUSG00000030739.19	ENSMUST00000107899.10	6390	40	32957	2	241	0	3prime_fragment	FALSE	canonical	3	20	junction_21	19.6060898786724	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44281968	44255228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44280137_44280270_44280974_44281084_44281806
ENSMUSG00000030739.19_2	chr7	-	3898	21	ISM	ENSMUSG00000030739.19	ENSMUST00000107899.10	6390	40	34584	1	-335	0	3prime_fragment	FALSE	canonical	3	29	junction_14	18.5391477689779	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGGCTGCGTTTCTAAT	NA	False	NA	-2	True	AATAAA	-16	NA	44280341	44255227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44280137
ENSMUSG00000030739.19_21	chr7	-	5656	36	ISM	ENSMUSG00000030739.19	ENSMUST00000107899.10	6390	40	9862	4	-3071	-2	3prime_fragment	FALSE	canonical	2	5	junction_31	24.1144211235196	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACCATGGCTGCGTTTCT	1936	False	NA	-5	True	AATAAA	-13	NA	44305063	44255230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44280137_44280270_44280974_44281084_44281806_44281968_44282358_44282429_44282898_44283021_44283782_44283971_44287188_44287304_44287713_44287888_44288366_44288541_44288659_44288813_44290484_44290604_44292887_44292984_44301854_44301996_44303379_44303479_44304645_44304710_44305015
ENSMUSG00000030739.19_30	chr7	-	2696	14	ISM	ENSMUSG00000030739.19	ENSMUST00000107899.10	6390	40	40328	1	5409	0	3prime_fragment	FALSE	canonical	3	39	junction_10	19.1648099606649	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGGCTGCGTTTCTAAT	NA	False	NA	-2	True	AATAAA	-16	NA	44274597	44255227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389
ENSMUSG00000030739.19_6	chr7	-	1438	7	FSM	ENSMUSG00000030739.19	ENSMUST00000208044.2	1438	7	1	-1	1	0	multi-exon	TRUE	canonical	3	22	junction_6	22.8837642591132	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGGCTGCGTTTCTAAT	NA	False	NA	-2	True	AATAAA	-16	NA	44263548	44255227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263374
ENSMUSG00000030739.19_8	chr7	-	3959	21	NNC	ENSMUSG00000030739.19	novel	6390	40	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_20	20.319694879599	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44280014	44255228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44279748
ENSMUSG00000030741.16_1	chr7	-	2177	12	FSM	ENSMUSG00000030741.16	ENSMUST00000032994.15	2219	12	32	10	3	-3	multi-exon	TRUE	canonical	3	348	junction_9	48.6508899292612	598	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCCTGACTGACTGCTT	NA	False	NA	-9	True	AATAAA	-11	NA	125976590	125969241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
ENSMUSG00000030742.8_2	chr7	-	1256	12	FSM	ENSMUSG00000030742.8	ENSMUST00000032997.8	1235	12	-25	4	11	-4	multi-exon	FALSE	canonical	3	34	junction_9	5.32264769756525	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGTCGTCGTTGTCTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	125968731	125963002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967755_125967973_125968009_125968113_125968142_125968319
ENSMUSG00000030742.8_4	chr7	-	1347	11	NIC	ENSMUSG00000030742.8	novel	1235	12	NA	NA	-7	-7	intron_retention	FALSE	canonical	3	34	junction_9	5.53534100123922	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAAGTCGTCGTTGTCT	NA	False	NA	NA	False	AATAAA	-10	NA	125968720	125963005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967755_125967973_125968142_125968319
ENSMUSG00000030742.8_5	chr7	-	1191	12	NIC	ENSMUSG00000030742.8	novel	1235	12	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	13.1689592452595	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAAGTCGTCGTTGTCT	NA	False	NA	NA	False	AATAAA	-10	NA	125968711	125963005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967713_125967973_125968009_125968113_125968142_125968319
ENSMUSG00000030744.14_0	chr7	-	824	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	87	997	0	0	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	4029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACAAGGCCTGACT	8422	False	NA	-45	True	AATAAA	-25	NA	99132858	99128099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ENSMUSG00000030744.14_3	chr7	-	396	3	ISM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	3723	997	3619	0	3prime_fragment	FALSE	canonical	3	4974	junction_1	4823.5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACAAGGCCTGACT	2524	False	NA	-45	True	AATAAA	-25	NA	99129222	99128099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_99128159_99128480_99128678_99129082
ENSMUSG00000030747.6_0	chr7	-	2252	8	FSM	ENSMUSG00000030747.6	ENSMUST00000033001.6	2262	8	0	10	0	-10	multi-exon	FALSE	canonical	3	97	junction_4	10.965623464226	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACAGCCTGTGAGTTGT	NA	False	NA	NA	False	AATAAA	-8	NA	98831926	98802874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_98803908_98806183_98806387_98807359_98807535_98808039_98808245_98813841_98813913_98814288_98814397_98818904_98819034_98831598
ENSMUSG00000030748.10_0	chr7	+	3619	11	NIC	ENSMUSG00000030748.10	novel	5256	11	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	3.9	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGTTTCCTTTACTATAC	NA	False	NA	NA	False	AATAAA	-13	NA	125151428	125177137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_125151501_125163723_125163909_125164808_125164897_125166327_125166470_125168194_125168347_125169113_125169266_125170605_125170763_125172022_125172123_125173809_125173889_125174311_125174362_125174695
ENSMUSG00000030748.10_1	chr7	+	3594	11	FSM	ENSMUSG00000030748.10	ENSMUST00000033004.8	5256	11	153	1509	2	-2	multi-exon	TRUE	canonical	0	0	junction_6	3.9	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGTTTCCTTTACTATAC	NA	False	NA	NA	False	AATAAA	-13	NA	125151444	125177137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_125151501_125163723_125163900_125164808_125164897_125166327_125166470_125168194_125168347_125169113_125169266_125170605_125170763_125172022_125172123_125173809_125173889_125174311_125174362_125174695
ENSMUSG00000030748.10_2	chr7	+	1901	1	ISM	ENSMUSG00000030748.10	ENSMUST00000033004.8	5256	11	23947	1507	23780	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTCCTTTACTATACAC	NA	False	NA	NA	False	AATAAA	-15	NA	125175238	125177139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_125175200_125177100
ENSMUSG00000030750.14_6	chr7	-	947	8	FSM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	157	16	-40	-16	multi-exon	FALSE	canonical	3	553	junction_7	177.832872698624	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTCTGTAATCCAGGGC	NA	False	NA	-27	True	AGTAAA	-17	NA	125090611	125066827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_125067016_125067450_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
ENSMUSG00000030750.14_8	chr7	-	923	7	ISM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	5111	14	4914	-14	3prime_fragment	FALSE	canonical	3	915	junction_1	63.0951662173894	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTGTAATCCAGGGCTT	NA	False	NA	-25	True	AGTAAA	-19	NA	125085657	125066825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_125067016_125067450_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509
ENSMUSG00000030751.19_1	chr7	-	1138	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	58	5	-6	-5	multi-exon	TRUE	canonical	3	2548	junction_6	196.061655709387	1137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTATTGTGTCAAGTTTTT	NA	False	NA	-5	True	AATAAA	-12	NA	113875295	113863845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUSG00000030752.9_1	chr7	+	1909	7	NIC	ENSMUSG00000030752.9	novel	2389	8	NA	NA	-35	-14	combination_of_known_junctions	FALSE	canonical	3	3	junction_1	17.0953209972788	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAACAAACAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	125043812	125061427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_125043965_125054262_125054430_125055604_125055738_125056135_125056181_125059046_125059197_125060086_125060180_125060258
ENSMUSG00000030752.9_2	chr7	+	2369	8	FSM	ENSMUSG00000030752.9	ENSMUST00000033010.9	2389	8	10	10	2	-10	multi-exon	FALSE	canonical	3	41	junction_7	4.74664220738176	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAACAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-17	NA	125043857	125061431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_125043965_125051399_125051901_125054262_125054430_125055604_125055738_125056135_125056181_125059046_125059197_125060086_125060180_125060258
ENSMUSG00000030753.16_0	chr7	+	3696	5	FSM	ENSMUSG00000030753.16	ENSMUST00000033009.16	3723	5	24	3	24	-3	multi-exon	FALSE	canonical	3	187	junction_4	20.5791156272567	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTCAGGTGAGGTGTTT	NA	False	NA	9	True	AATAAA	-16	NA	98352333	98367266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_98352686_98356203_98356325_98359332_98359441_98362065_98362103_98364188
ENSMUSG00000030753.16_16	chr7	+	2521	1	ISM	ENSMUSG00000030753.16	ENSMUST00000033009.16	3723	5	12436	3	5662	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTCAGGTGAGGTGTTT	NA	False	NA	9	True	AATAAA	-16	NA	98364745	98367266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_98364700_98367300
ENSMUSG00000030753.16_3	chr7	+	3812	6	FSM	ENSMUSG00000030753.16	ENSMUST00000126356.8	1123	6	3	-2692	3	-3	multi-exon	FALSE	canonical	3	28	junction_2	87.2958189147682	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTCAGGTGAGGTGTTT	NA	False	NA	9	True	AATAAA	-16	NA	98352312	98367266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_98352686_98356203_98356325_98357143_98357239_98359332_98359441_98362065_98362103_98364188
ENSMUSG00000030753.16_4	chr7	+	3757	5	FSM	ENSMUSG00000030753.16	ENSMUST00000153566.2	607	5	-204	-2946	21	-3	multi-exon	FALSE	canonical	3	19	junction_4	84.5192285814299	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTCAGGTGAGGTGTTT	NA	False	NA	9	True	AATAAA	-16	NA	98352330	98367266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_98352686_98356203_98356325_98359332_98359441_98362065_98362161_98364188
ENSMUSG00000030754.10_0	chr7	-	3332	22	FSM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	10	4	10	-4	multi-exon	FALSE	canonical	3	435	junction_12	34.3731688854697	1003	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTGTATCTGTGGGAT	NA	False	NA	-11	True	AATAAA	-12	NA	113853936	113814797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
ENSMUSG00000030757.14_0	chr7	-	2847	1	FSM	ENSMUSG00000030757.14	ENSMUST00000206148.2	3186	1	2695	-2356	2695	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTTGAAGGATGTCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	123077457	123074610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_123074600_123077500
ENSMUSG00000030757.14_1	chr7	-	5236	8	NIC	ENSMUSG00000030757.14	novel	7831	7	NA	NA	-106	-385	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	5.98637909707342	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTACATGCAGCGTCAT	NA	False	NA	NA	False	AATAGA	-8	NA	123099778	123077351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_123079996_123081863_123081908_123084162_123084655_123088801_123089486_123094028_123094156_123094515_123094587_123097808_123097996_123098791
ENSMUSG00000030757.14_2	chr7	-	6054	3	ISM	ENSMUSG00000030757.14	ENSMUST00000042470.14	7831	7	10696	2	-4776	-2	3prime_fragment	FALSE	canonical	1	4	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGAAGGATGTCTTTAT	NA	False	NA	NA	False	AATAAA	-22	NA	123088976	123074608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_123079996_123084162_123084655_123088801
ENSMUSG00000030757.14_4	chr7	-	3793	7	FSM	ENSMUSG00000030757.14	ENSMUST00000042470.14	7831	7	-98	4136	-98	622	multi-exon	FALSE	canonical	1	4	junction_1	4.54606056566195	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTTTTATGGTGTTATC	NA	False	NA	NA	False	AATATA	-11	NA	123099770	123078742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_123079996_123084162_123084655_123088801_123089486_123094028_123094156_123094515_123094587_123097808_123097996_123098791
ENSMUSG00000030757.14_5	chr7	-	3340	5	ISM	ENSMUSG00000030757.14	ENSMUST00000042470.14	7831	7	-107	12912	-107	5918	5prime_fragment	FALSE	canonical	3	12	junction_2	1.87082869338697	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGTCACCATAATCTTT	NA	False	NA	NA	False	NA	NA	NA	123099779	123087518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_123089486_123094028_123094156_123094515_123094587_123097808_123097996_123098791
ENSMUSG00000030757.14_6	chr7	-	3693	4	NIC	ENSMUSG00000030757.14	novel	7831	7	NA	NA	-105	5913	intron_retention	FALSE	canonical	3	13	junction_2	1.69967317119759	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTTTAAAAGTCACCATAA	NA	False	NA	NA	False	NA	NA	NA	123099777	123087523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_123089486_123094028_123094587_123097808_123097996_123098791
ENSMUSG00000030759.17_11	chr7	+	4291	13	NIC	ENSMUSG00000030759.17	novel	4962	13	NA	NA	7	421	combination_of_known_junctions	FALSE	canonical	2	61	junction_2	108.378452142891	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAGCATCTATTGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	113113075	113170086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_113113145_113125194_113125246_113138483_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
ENSMUSG00000030759.17_2	chr7	+	4295	13	FSM	ENSMUSG00000030759.17	ENSMUST00000033018.15	4962	13	35	632	7	421	multi-exon	FALSE	canonical	2	280	junction_11	48.5005727343044	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAGCATCTATTGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	113113075	113170086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
ENSMUSG00000030759.17_50	chr7	+	2001	1	ISM	ENSMUSG00000030759.17	ENSMUST00000033018.15	4962	13	55045	632	2779	421	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAGCATCTATTGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	113168085	113170086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_113168100_113170100
ENSMUSG00000030760.15_0	chr7	-	3127	11	FSM	ENSMUSG00000030760.15	ENSMUST00000033020.14	11340	11	41	8172	9	-903	multi-exon	FALSE	canonical	3	186	junction_1	20.7511445467473	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATGTCAATGTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	97958704	97863767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
ENSMUSG00000030760.15_4	chr7	-	2100	1	ISM	ENSMUSG00000030760.15	ENSMUST00000033020.14	11340	11	93625	7425	10975	-156	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAACTGGTTTTGGAAGA	NA	False	NA	-5	True	AATAAA	-14	NA	97865120	97863020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_97863000_97865100
ENSMUSG00000030762.12_0	chr7	+	1512	6	FSM	ENSMUSG00000030762.12	ENSMUST00000033023.10	1487	6	-31	6	-31	0	multi-exon	FALSE	canonical	3	25	junction_2	2.57681974534503	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCAGGTGTCTGTTGACT	4345	False	NA	1	True	AATAAA	-15	NA	123061482	123067221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_123061682_123061796_123062042_123063411_123063539_123064331_123064547_123065808_123065944_123066630
ENSMUSG00000030762.12_3	chr7	+	1020	4	ISM	ENSMUSG00000030762.12	ENSMUST00000033023.10	1487	6	-31	2447	-31	-2429	5prime_fragment	FALSE	canonical	3	25	junction_2	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAATGATCTCTAACC	4345	False	NA	NA	False	AATAAA	-30	NA	123061482	123064780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_123061682_123061796_123062042_123063411_123063539_123064331
ENSMUSG00000030762.12_6	chr7	+	810	3	ISM	ENSMUSG00000030762.12	ENSMUST00000206106.2	1159	5	1494	-5	1494	-1	3prime_fragment	FALSE	canonical	3	27	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGTCTGTTGACTTGTCT	7330	False	NA	6	True	AATAAA	-20	NA	123064467	123067226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_123064547_123065808_123065944_123066630
ENSMUSG00000030763.8_1	chr7	+	1301	11	FSM	ENSMUSG00000030763.8	ENSMUST00000033025.7	1369	11	56	12	-18	-2	multi-exon	FALSE	canonical	0	0	junction_5	88.7783757454483	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACTCTGCTACATCTGT	6880	False	NA	19	True	AATAAA	-19	NA	122977260	123029569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003708_123009946_123010050_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
ENSMUSG00000030763.8_17	chr7	+	2228	2	FSM	ENSMUSG00000030763.8	ENSMUST00000206727.2	548	2	-1686	6	-1686	-2	multi-exon	FALSE	canonical	3	322	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCAGACTCTGCTACAT	NA	False	NA	15	True	AATAAA	-15	NA	123025396	123029565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_123027415_123029355
ENSMUSG00000030766.16_0	chr7	-	3382	21	NIC	ENSMUSG00000030766.16	novel	3311	20	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_20	48.4230317101274	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAAACTTGCTAATTC	NA	False	NA	-10	True	ATTAAA	-16	NA	122969115	122878502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_122879340_122882999_122883049_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
ENSMUSG00000030766.16_16	chr7	-	3294	19	NIC	ENSMUSG00000030766.16	novel	3336	20	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	53.6950982888281	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAAACTTGCTAATTC	NA	False	NA	-10	True	ATTAAA	-16	NA	122969116	122878502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_122879340_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122968976
ENSMUSG00000030766.16_3	chr7	-	3334	20	FSM	ENSMUSG00000030766.16	ENSMUST00000106442.9	3336	20	-7	9	-7	0	multi-exon	FALSE	canonical	0	0	junction_19	53.0955862029814	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAAACTTGCTAATTC	NA	False	NA	-10	True	ATTAAA	-16	NA	122969116	122878502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_122879340_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
ENSMUSG00000030766.16_7	chr7	-	3347	20	NIC	ENSMUSG00000030766.16	novel	3336	20	NA	NA	-7	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	48.7393428936662	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACTTGCTAATTCTTAG	NA	False	NA	-6	True	ATTAAA	-20	NA	122969116	122878498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_122879340_122882999_122883049_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122968976
ENSMUSG00000030768.13_0	chr1	-	4985	10	FSM	ENSMUSG00000030768.13	ENSMUST00000003035.12	4984	10	-5	4	0	-4	multi-exon	FALSE	canonical	3	35	junction_1	20.4420288428002	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCACCTGTCTCCGTCG	NA	False	NA	-2	True	AATAAA	-30	NA	183003054	182867833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_182871435_182877807_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_182984515_182984604_183002886
ENSMUSG00000030768.13_16	chr1	-	1298	8	NIC	ENSMUSG00000030768.13	novel	4984	10	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_6	31.0430905257153	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCTGCCTCTGCCTTGC	NA	False	NA	-2	True	AATAAA	-13	NA	183003045	182877756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182984515_182984604_183002886
ENSMUSG00000030768.13_17	chr1	-	1426	9	ISM	ENSMUSG00000030768.13	ENSMUST00000003035.12	4984	10	3	9928	3	-1	5prime_fragment	FALSE	canonical	3	56	junction_6	14.115040736746	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACATCTGCCTCTGCCTTG	NA	False	NA	-3	True	AATAAA	-12	NA	183003046	182877757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_182984515_182984604_183002886
ENSMUSG00000030768.13_18	chr1	-	1339	8	ISM	ENSMUSG00000030768.13	ENSMUST00000195372.2	4901	9	4	9931	-1	-4	5prime_fragment	FALSE	canonical	3	12	junction_7	29.7170328400452	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGAACATCTGCCTCTGCC	NA	False	NA	-6	True	AATAAA	-9	NA	183003050	182877760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_183002886
ENSMUSG00000030768.13_2	chr1	-	4851	9	NIC	ENSMUSG00000030768.13	novel	4984	10	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	32.4169612240259	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCACCTGTCTCCGTCG	NA	False	NA	-2	True	AATAAA	-30	NA	183003048	182867833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_182871435_182877807_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182984515_182984604_183002886
ENSMUSG00000030768.13_4	chr1	-	4456	9	NIC	ENSMUSG00000030768.13	novel	4984	10	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	33.1886181544216	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCACCTGTCTCCGTCG	NA	False	NA	-2	True	AATAAA	-30	NA	183003047	182867833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_182871435_182877807_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182955059_182955188_182984515_182984604_183002886
ENSMUSG00000030768.13_7	chr1	-	2356	1	ISM	ENSMUSG00000030768.13	ENSMUST00000171366.7	4687	8	58836	4	58836	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCACCTGTCTCCGTCG	NA	False	NA	-2	True	AATAAA	-30	NA	182870189	182867833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_182867800_182870200
ENSMUSG00000030768.13_8	chr1	-	4889	9	FSM	ENSMUSG00000030768.13	ENSMUST00000195372.2	4901	9	8	4	3	-4	multi-exon	FALSE	canonical	3	12	junction_8	30.8666486681013	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCACCTGTCTCCGTCG	NA	False	NA	-2	True	AATAAA	-30	NA	183003046	182867833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_182871435_182877807_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_183002886
ENSMUSG00000030769.16_27	chr7	+	1613	9	ISM	ENSMUSG00000030769.16	ENSMUST00000167299.9	2022	15	16666	-47	11963	-3	3prime_fragment	FALSE	canonical	3	14	junction_3	5.89358761706314	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTTCAGAGGTGCTGCT	NA	False	NA	12	True	AATAAA	-19	NA	122851508	122872473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_122851717_122857576_122857783_122859729_122859866_122864411_122864520_122864809_122864961_122866971_122867141_122868245_122868462_122869063_122869233_122872223
ENSMUSG00000030769.16_8	chr7	+	2674	18	NIC	ENSMUSG00000030769.16	novel	2396	17	NA	NA	-170	-8	combination_of_known_junctions	TRUE	canonical	3	9	junction_3	7.39025824684207	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTAGAGCTTCAGAGGTG	NA	False	NA	7	True	AATAAA	-14	NA	122813832	122872468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_122814221_122828131_122828215_122832210_122832328_122834820_122834978_122837346_122837419_122838591_122838697_122839961_122840022_122847160_122847266_122849293_122849400_122851635_122851717_122857576_122857783_122859729_122859866_122864411_122864520_122864809_122864961_122866971_122867141_122868245_122868462_122869063_122869233_122872223
ENSMUSG00000030770.16_0	chr7	+	4237	13	FSM	ENSMUSG00000030770.16	ENSMUST00000033030.14	4454	13	201	16	2	-16	multi-exon	FALSE	canonical	2	13	junction_2	5.24603024517905	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAACGAACATACAAACTCT	3530	False	NA	NA	False	NA	NA	NA	112027113	112190883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_112027308_112143383_112143474_112143939_112144011_112146717_112146821_112159135_112159277_112166969_112167086_112172077_112172137_112174561_112174582_112175606_112175669_112176142_112176212_112178862_112178965_112180156_112180230_112187746
ENSMUSG00000030770.16_3	chr7	+	4053	12	ISM	ENSMUSG00000030770.16	ENSMUST00000106640.2	1465	13	24468	-2708	24468	-14	3prime_fragment	FALSE	canonical	2	13	junction_1	5.05016160448405	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGAACATACAAACTCTTC	NA	False	NA	NA	False	NA	NA	NA	112143375	112190885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_112143474_112143939_112144011_112146717_112146821_112159135_112159277_112166969_112167086_112172077_112172137_112174561_112174582_112175606_112175669_112176142_112176212_112178862_112178965_112180156_112180230_112187746
ENSMUSG00000030770.16_4	chr7	+	3627	6	ISM	ENSMUSG00000030770.16	ENSMUST00000106640.2	1465	13	55492	-2708	5943	-14	3prime_fragment	FALSE	canonical	3	16	junction_3	5.97996655509042	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGAACATACAAACTCTTC	NA	False	NA	NA	False	NA	NA	NA	112174399	112190885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_112174582_112175606_112175669_112176142_112176212_112178862_112178965_112180156_112180230_112187746
ENSMUSG00000030770.16_5	chr7	+	1955	1	ISM	ENSMUSG00000030770.16	ENSMUST00000033030.14	4454	13	162022	10	20478	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATACAAACTCTTCGCTG	NA	False	NA	NA	False	AATGAA	-3	NA	112188934	112190889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_112188900_112190900
ENSMUSG00000030772.7_0	chr7	-	3264	7	ISM	ENSMUSG00000030772.7	ENSMUST00000033036.7	3359	8	631	11	631	-11	3prime_fragment	FALSE	canonical	3	37	junction_5	9.03234926989282	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCACCTGTGTCCATGGT	NA	False	NA	-12	True	AATAAA	-12	NA	111757633	111715234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_111717638_111718554_111718712_111719594_111719740_111720796_111720890_111748167_111748252_111749817_111749956_111757389
ENSMUSG00000030772.7_2	chr7	-	3184	6	NIC	ENSMUSG00000030772.7	novel	3359	8	NA	NA	631	-7	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	21.3971960779912	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTGTCCATGGTATGG	NA	False	NA	-8	True	AATAAA	-16	NA	111757633	111715230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_111717638_111718554_111718712_111719594_111719740_111720796_111720890_111749817_111749956_111757389
ENSMUSG00000030772.7_5	chr7	-	2015	1	ISM	ENSMUSG00000030772.7	ENSMUST00000033036.7	3359	8	41020	6	41020	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTGTCCATGGTATGGG	NA	False	NA	-7	True	AATAAA	-17	NA	111717244	111715229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_111715200_111717200
ENSMUSG00000030772.7_7	chr7	-	3377	8	FSM	ENSMUSG00000030772.7	ENSMUST00000033036.7	3359	8	-32	14	-32	-14	multi-exon	FALSE	canonical	0	0	junction_7	18.9198092927352	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAGTCACCTGTGTCCAT	NA	False	NA	-15	True	AATAAA	-9	NA	111758296	111715237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_111717638_111718554_111718712_111719594_111719740_111720796_111720890_111748167_111748252_111749817_111749956_111757389_111757626_111758172
ENSMUSG00000030774.14_0	chr7	+	2373	15	FSM	ENSMUSG00000030774.14	ENSMUST00000206984.2	2794	15	1	420	1	181	multi-exon	FALSE	canonical	3	118	junction_1	35.6279671159656	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGAATCTCAGCCATCC	NA	False	NA	2	True	AATAAA	-13	NA	97437748	97560670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_97438182_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ENSMUSG00000030774.14_1	chr7	+	2367	15	NIC	ENSMUSG00000030774.14	novel	2794	15	NA	NA	1	178	combination_of_known_splicesites	TRUE	canonical	3	45	junction_1	51.4204358644479	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGAAACAGAATCTCAGCCA	NA	False	NA	-1	True	AATAAA	-10	NA	97437748	97560667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_97438182_97503645_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ENSMUSG00000030774.14_22	chr7	+	2110	15	FSM	ENSMUSG00000030774.14	ENSMUST00000033040.12	3065	15	37	918	37	181	multi-exon	FALSE	canonical	3	24	junction_1	56.3067853960129	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGAATCTCAGCCATCC	NA	False	NA	2	True	AATAAA	-13	NA	97492178	97560670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_97492349_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ENSMUSG00000030774.14_23	chr7	+	2216	15	NIC	ENSMUSG00000030774.14	novel	3065	15	NA	NA	10	263	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	60.5657426576565	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGAGATCAGTTGAAATT	NA	False	NA	84	True	TATAAA	-24	NA	97492151	97560752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_97492349_97503645_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ENSMUSG00000030779.17_1	chr7	+	6708	17	FSM	ENSMUSG00000030779.17	ENSMUST00000071590.6	5728	17	-982	2	-628	1	multi-exon	TRUE	canonical	3	56	junction_15	18.1597726789186	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTGTTGCAAATGTATAT	6938	False	NA	13	True	AATAAA	-19	NA	122569158	122601778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_122570351_122575158_122575259_122577798_122577836_122582185_122582231_122584215_122584305_122584423_122584524_122584882_122585023_122587824_122587998_122589052_122589157_122589267_122589606_122591191_122591289_122591446_122591526_122591622_122591678_122593892_122593962_122596165_122596529_122597747_122599503_122599806
ENSMUSG00000030779.17_2	chr7	+	6808	18	FSM	ENSMUSG00000030779.17	ENSMUST00000052135.14	6184	18	-627	3	-627	0	multi-exon	FALSE	canonical	3	62	junction_15	18.9192419579373	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTGTTGCAAATGTATA	6939	False	NA	12	True	AATAAA	-18	NA	122569159	122601777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_122570351_122575158_122575259_122577798_122577836_122582185_122582231_122584215_122584305_122584423_122584524_122584882_122585023_122587824_122587998_122589052_122589157_122589267_122589606_122591191_122591289_122591446_122591526_122591622_122591678_122593892_122593962_122596165_122596529_122596818_122596921_122597747_122599503_122599806
ENSMUSG00000030779.17_38	chr7	+	2894	2	ISM	ENSMUSG00000030779.17	ENSMUST00000071590.6	5728	17	28439	3	-922	0	3prime_fragment	FALSE	canonical	3	144	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTGTTGCAAATGTATA	NA	False	NA	12	True	AATAAA	-18	NA	122598579	122601777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_122599503_122599806
ENSMUSG00000030779.17_39	chr7	+	1551	1	FSM	ENSMUSG00000030779.17	ENSMUST00000205495.2	2276	1	725	0	725	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTGTTGCAAATGTATA	NA	False	NA	12	True	AATAAA	-18	NA	122600226	122601777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_122600200_122601800
ENSMUSG00000030779.17_4	chr7	+	1734	3	FSM	ENSMUSG00000030779.17	ENSMUST00000098062.9	6345	3	-764	5375	-628	256	multi-exon	FALSE	canonical	3	123	junction_1	1.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTGCCATTTCCACGT	6938	False	NA	NA	False	AATAAA	-17	NA	122569158	122578240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_122570351_122575158_122575259_122577798
ENSMUSG00000030780.16_0	chr7	-	1062	1	ISM	ENSMUSG00000030780.16	ENSMUST00000147091.8	2513	3	2407	1	2407	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCGCTTCATACTGCAGG	5219	False	NA	-17	True	AGTAAA	-15	NA	127871613	127870551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_127870600_127871600
ENSMUSG00000030780.16_3	chr7	-	2561	13	FSM	ENSMUSG00000030780.16	ENSMUST00000033044.16	2627	13	65	1	3	-1	multi-exon	FALSE	canonical	3	141	junction_4	13.6897670623799	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCGCTTCATACTGCAGG	1171	False	NA	-17	True	AGTAAA	-15	NA	127897277	127870551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873876_127875257_127875316_127875399_127875585_127875666_127875738_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
ENSMUSG00000030780.16_6	chr7	-	1990	7	NIC	ENSMUSG00000030780.16	novel	2627	13	NA	NA	3528	-1	intron_retention	FALSE	canonical	3	141	junction_4	13.9164171634321	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCGCTTCATACTGCAGG	9123	False	NA	-17	True	AGTAAA	-15	NA	127884349	127870551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873876_127875257_127875316_127875399_127875738_127884284
ENSMUSG00000030781.14_1	chr7	+	967	4	ISM	ENSMUSG00000030781.14	ENSMUST00000118169.8	2277	14	5119	4	221	-4	3prime_fragment	FALSE	canonical	1	3	junction_1	2.82842712474619	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATCCTGTTGTGGCTGAA	NA	False	NA	NA	False	AATAAA	-12	NA	127869966	127871598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127870125_127870206_127870423_127870920_127871051_127871135
ENSMUSG00000030785.9_0	chr7	-	498	3	FSM	ENSMUSG00000030785.9	ENSMUST00000033049.9	680	3	3	179	3	-179	multi-exon	FALSE	canonical	3	110	junction_1	3.5	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCCTCTGGCTCTTTGG	5386	False	NA	-6	True	AATAAA	-14	NA	127805556	127804785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127804985_127805071_127805209_127805394
ENSMUSG00000030786.19_1	chr7	+	3938	24	ISM	ENSMUSG00000030786.19	ENSMUST00000064821.14	4682	30	17559	130	17456	-129	3prime_fragment	TRUE	canonical	0	0	junction_7	2.165199930085	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTCAGAGAATTACCCTG	NA	False	NA	NA	False	AATAAA	-19	NA	127679370	127717533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127679564_127680776_127680931_127682847_127682999_127684105_127684180_127684714_127684845_127685101_127685245_127700587_127700729_127700805_127701019_127706799_127706931_127707011_127707176_127711299_127711455_127711546_127711679_127711832_127711907_127712128_127712271_127712362_127712489_127712989_127713070_127713907_127713992_127714290_127714367_127714939_127715048_127715189_127715274_127715373_127715488_127715573_127715676_127715907_127716019_127716477
ENSMUSG00000030788.17_0	chr7	-	3984	6	FSM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	46	2	-9	-2	multi-exon	FALSE	canonical	3	107	junction_3	5.45527267879434	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCGTAGGTGTTGGGAGT	NA	False	NA	-2	True	ATTAAA	-20	NA	110443618	110412739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436283_110436478_110443545
ENSMUSG00000030788.17_3	chr7	-	2591	1	ISM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	28335	1	5161	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCGTAGGTGTTGGGAGTT	NA	False	NA	-1	True	ATTAAA	-21	NA	110415329	110412738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_110412700_110415300
ENSMUSG00000030788.17_5	chr7	-	3898	6	NIC	ENSMUSG00000030788.17	novel	4032	6	NA	NA	-10	-3	intron_retention	FALSE	canonical	3	12	junction_4	41.252393869932	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCCGTAGGTGTTGGGAG	NA	False	NA	-3	True	ATTAAA	-19	NA	110443619	110412740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436369_110436478_110443545
ENSMUSG00000030788.17_7	chr7	-	3781	5	NIC	ENSMUSG00000030788.17	novel	4032	6	NA	NA	-9	-11	intron_retention	FALSE	canonical	2	4	junction_4	48.6640267548833	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACTTGCATCCGTAGGT	NA	False	NA	-11	True	ATTAAA	-11	NA	110443618	110412748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110443545
ENSMUSG00000030788.17_8	chr7	-	3912	5	ISM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	7186	2	258	-2	3prime_fragment	FALSE	canonical	3	107	junction_3	5.71729831301464	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCGTAGGTGTTGGGAGT	NA	False	NA	-2	True	ATTAAA	-20	NA	110436478	110412739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436283
ENSMUSG00000030790.16_0	chr7	+	1389	4	FSM	ENSMUSG00000030790.16	ENSMUST00000033054.10	1390	4	-2	3	-2	-3	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTCATTCTCGGTTCATG	5111	False	NA	NA	False	AATAAA	-13	NA	110226865	110229024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_110227029_110227463_110227584_110227731_110227882_110228068
ENSMUSG00000030792.9_1	chr7	-	864	5	FSM	ENSMUSG00000030792.9	ENSMUST00000033057.9	1149	5	277	8	-23	-2	multi-exon	FALSE	canonical	3	39	junction_1	6.17960354715414	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCAATCTCCTTTTGGT	8578	False	NA	-6	True	AATAAA	-15	NA	44861270	44856950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44857323_44859536_44859627_44859754_44859896_44860824_44860995_44861179
ENSMUSG00000030793.5_2	chr7	-	740	3	FSM	ENSMUSG00000030793.5	ENSMUST00000033056.5	3800	3	134	2926	134	-994	multi-exon	FALSE	canonical	3	1219	junction_2	45	397	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTGGGATGTTTTTGC	NA	False	NA	-6	True	AAAACA	-17	NA	127592905	127591805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127592138_127592286_127592344_127592554
ENSMUSG00000030795.19_0	chr7	+	1827	15	FSM	ENSMUSG00000030795.19	ENSMUST00000106251.10	5536	15	36	3673	2	-1	multi-exon	FALSE	canonical	3	619	junction_3	208.17746550205	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTCTGTTTCCCCCAGT	1186	False	NA	33	True	ATTAAA	-16	NA	127566664	127581200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
ENSMUSG00000030795.19_1	chr7	+	1826	15	FSM	ENSMUSG00000030795.19	ENSMUST00000077609.12	1831	15	1	4	0	-1	multi-exon	FALSE	canonical	3	245	junction_3	273.376618440941	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTCTGTTTCCCCCAGT	1184	False	NA	33	True	ATTAAA	-16	NA	127566662	127581200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
ENSMUSG00000030795.19_53	chr7	+	1181	10	ISM	ENSMUSG00000030795.19	ENSMUST00000077609.12	1831	15	5112	4	727	-1	3prime_fragment	FALSE	canonical	3	1038	junction_2	118.98874311318	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTCTGTTTCCCCCAGT	6295	False	NA	33	True	ATTAAA	-16	NA	127571773	127581200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
ENSMUSG00000030796.18_0	chr7	+	2056	12	FSM	ENSMUSG00000030796.18	ENSMUST00000033060.14	2140	12	56	28	-1	-3	multi-exon	FALSE	canonical	3	157	junction_1	60.1724793633042	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	5486	False	NA	NA	False	AATAAA	-10	NA	44865232	44883040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44865257_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUSG00000030796.18_14	chr7	+	2034	11	FSM	ENSMUSG00000030796.18	ENSMUST00000107801.10	3396	11	1359	3	0	-3	multi-exon	FALSE	canonical	3	317	junction_7	23.9883304963059	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	6888	False	NA	NA	False	AATAAA	-10	NA	44866634	44883040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUSG00000030796.18_16	chr7	+	2073	12	NIC	ENSMUSG00000030796.18	novel	3396	11	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	100.831419739145	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCC	5514	False	NA	NA	False	AATAAA	-13	NA	44865260	44883043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44865299_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUSG00000030796.18_17	chr7	+	2080	12	NIC	ENSMUSG00000030796.18	novel	3396	11	NA	NA	7	-3	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	97.4747265400093	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	5536	False	NA	NA	False	AATAAA	-10	NA	44865282	44883040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44865331_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUSG00000030796.18_39	chr7	+	534	1	ISM	ENSMUSG00000030796.18	ENSMUST00000033060.14	2140	12	17330	28	935	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-10	NA	44882506	44883040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_44882500_44883000
ENSMUSG00000030798.16_0	chr7	-	1207	8	FSM	ENSMUSG00000030798.16	ENSMUST00000098461.10	1227	8	15	5	-10	0	multi-exon	FALSE	canonical	3	49	junction_1	15.6426940630769	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTGGT	4434	False	NA	-18	True	AATAAA	-20	NA	44888249	44883060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
ENSMUSG00000030798.16_1	chr7	-	2487	6	NIC	ENSMUSG00000030798.16	novel	2541	6	NA	NA	-4	0	intron_retention	FALSE	canonical	3	6	junction_5	33.1445319773866	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTGGT	4198	False	NA	-18	True	AATAAA	-20	NA	44888485	44883060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888383
ENSMUSG00000030798.16_12	chr7	-	1816	7	FSM	ENSMUSG00000030798.16	ENSMUST00000211373.2	1428	7	142	-530	64	1	multi-exon	FALSE	canonical	3	58	junction_1	11.4661337085446	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTTTTTTTTTTTTTTTT	4527	False	NA	-21	True	AATAAA	-17	NA	44888156	44883063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
ENSMUSG00000030798.16_2	chr7	-	2551	6	FSM	ENSMUSG00000030798.16	ENSMUST00000209779.2	2541	6	-10	0	-10	0	multi-exon	FALSE	canonical	3	78	junction_5	4.63033476111609	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTGGT	4434	False	NA	-18	True	AATAAA	-20	NA	44888249	44883060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
ENSMUSG00000030798.16_22	chr7	-	1503	1	NIC	ENSMUSG00000030798.16	novel	1227	8	NA	NA	317	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTTTTTTTTTTTTTTG	8118	False	NA	-20	True	AATAAA	-18	NA	44884565	44883062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44883100_44884600
ENSMUSG00000030798.16_6	chr7	-	1216	9	FSM	ENSMUSG00000030798.16	ENSMUST00000033063.15	1268	9	52	0	-6	0	multi-exon	FALSE	canonical	3	15	junction_8	25.228641957109	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTTTTTTTTTTTTTTT	4196	False	NA	-22	True	AATAAA	-16	NA	44888487	44883064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083_44888159_44888383
ENSMUSG00000030798.16_7	chr7	-	2232	4	ISM	ENSMUSG00000030798.16	ENSMUST00000209779.2	2541	6	1611	0	-117	0	3prime_fragment	FALSE	canonical	3	86	junction_3	2.05480466765633	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTGGT	6055	False	NA	-18	True	AATAAA	-20	NA	44886628	44883060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44885068_44885538_44885644_44886425_44886501_44886583
ENSMUSG00000030798.16_8	chr7	-	2557	7	NIC	ENSMUSG00000030798.16	novel	1268	9	NA	NA	1	0	intron_retention	FALSE	canonical	3	15	junction_6	27.0164558906028	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTGGT	4203	False	NA	-18	True	AATAAA	-20	NA	44888480	44883060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083_44888159_44888383
ENSMUSG00000030800.11_0	chr7	-	1705	6	FSM	ENSMUSG00000030800.11	ENSMUST00000032988.10	1852	6	30	117	21	-117	multi-exon	FALSE	canonical	3	26	junction_4	2.78567765543682	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACAGCTGGCTGTCTGTG	NA	False	NA	-7	True	AATAAA	-24	NA	127529246	127525004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528728_127528747_127528969
ENSMUSG00000030801.11_0	chr7	+	1497	11	FSM	ENSMUSG00000030801.11	ENSMUST00000033070.9	1579	11	7	75	7	-75	multi-exon	FALSE	canonical	3	295	junction_2	15.0053323855222	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTGGAGGTACGCAGAGA	NA	False	NA	17	True	AGTAAA	-18	NA	127511694	127524934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
ENSMUSG00000030801.11_7	chr7	+	1818	10	ISM	ENSMUSG00000030801.11	ENSMUST00000033070.9	1579	11	8	76	8	-76	intron_retention	FALSE	canonical	3	295	junction_2	14.4666495988976	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTGGAGGTACGCAGAG	NA	False	NA	16	True	AGTAAA	-17	NA	127511695	127524933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280
ENSMUSG00000030802.15_0	chr7	+	1779	12	FSM	ENSMUSG00000030802.15	ENSMUST00000071056.14	3405	12	13	1613	-8	0	multi-exon	FALSE	canonical	3	550	junction_9	38.261820946588	679	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGGGCCCCAAATGTTG	NA	False	NA	28	True	ATTAAA	-20	NA	127503266	127507780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541_127504653_127504920_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092_127507252_127507338
ENSMUSG00000030805.15_0	chr7	+	1531	9	ISM	ENSMUSG00000030805.15	ENSMUST00000033075.14	1456	11	22	56	22	-37	intron_retention	FALSE	canonical	3	172	junction_3	23.6207006669997	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127440957	127448135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559
ENSMUSG00000030805.15_1	chr7	+	1367	11	FSM	ENSMUSG00000030805.15	ENSMUST00000033075.14	1456	11	30	59	30	-40	multi-exon	FALSE	canonical	3	172	junction_3	24.7872951327893	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127440965	127448132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740_127447840_127447922
ENSMUSG00000030805.15_24	chr7	+	1405	11	NIC	ENSMUSG00000030805.15	novel	1456	11	NA	NA	8	-46	combination_of_known_junctions	FALSE	canonical	1	3	junction_2	66.6550073137795	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127440943	127448126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127441241_127441435_127441538_127441594_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740_127447840_127447922
ENSMUSG00000030805.15_3	chr7	+	1466	10	FSM	ENSMUSG00000030805.15	ENSMUST00000121705.8	1316	10	-172	22	32	-22	multi-exon	FALSE	canonical	3	172	junction_3	22.9965107390847	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	127440967	127448150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740
ENSMUSG00000030805.15_4	chr7	+	1434	10	NIC	ENSMUSG00000030805.15	novel	1456	11	NA	NA	27	-46	intron_retention	FALSE	canonical	3	172	junction_3	25.7681974534502	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127440962	127448126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447840_127447922
ENSMUSG00000030811.15_10	chr7	+	3653	11	NIC	ENSMUSG00000030811.15	novel	3641	11	NA	NA	23	-1	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	33.2511653931107	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCGGGGCCGCTGACTTT	567	False	NA	7	True	TATAAA	-11	NA	127344980	127368647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127345040_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350199_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ENSMUSG00000030811.15_13	chr7	+	3616	11	FSM	ENSMUSG00000030811.15	ENSMUST00000033081.14	3410	11	-199	-7	-199	7	multi-exon	FALSE	canonical	3	48	junction_1	25.7536405193518	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGGCTCTTCCCATTCT	1334	False	NA	11	True	NA	NA	NA	127345747	127368107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127346310_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350199_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ENSMUSG00000030811.15_14	chr7	+	4014	11	NIC	ENSMUSG00000030811.15	novel	3410	11	NA	NA	-190	-5	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	29.982661656364	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTAGCCGGGGCCGCTGA	1343	False	NA	3	True	TATAAA	-7	NA	127345756	127368643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127346310_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350070_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ENSMUSG00000030811.15_16	chr7	+	3252	10	NIC	ENSMUSG00000030811.15	novel	3410	11	NA	NA	-64	-2	combination_of_known_junctions	FALSE	canonical	2	12	junction_4	35.1170880988616	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTCCTCCAGTTTGGCTC	1469	False	NA	1	True	NA	NA	NA	127345882	127368097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127346310_127347421_127347623_127348881_127349026_127349152_127349240_127350036_127350199_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ENSMUSG00000030811.15_29	chr7	+	3601	10	FSM	ENSMUSG00000030811.15	ENSMUST00000206893.2	3449	10	-160	8	-33	-1	multi-exon	FALSE	canonical	3	25	junction_5	29.4282974593846	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCGGGGCCGCTGACTTT	2872	False	NA	7	True	TATAAA	-11	NA	127347285	127368647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350070_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ENSMUSG00000030811.15_32	chr7	+	3703	10	ISM	ENSMUSG00000030811.15	ENSMUST00000033081.14	3410	11	1370	-551	-2	3	3prime_fragment	FALSE	canonical	3	52	junction_5	24.111367126137	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGCCGCTGACTTTTTGT	2903	False	NA	11	True	TATAAA	-15	NA	127347316	127368651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350199_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ENSMUSG00000030811.15_43	chr7	+	3072	7	ISM	ENSMUSG00000030811.15	ENSMUST00000033081.14	3410	11	3457	-541	1958	-7	3prime_fragment	FALSE	canonical	3	52	junction_2	25.3667542705452	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATCTAGCCGGGGCCGCT	4990	False	NA	1	True	TATAAA	-5	NA	127349403	127368641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127349539_127350036_127350199_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ENSMUSG00000030811.15_46	chr7	+	2574	5	ISM	ENSMUSG00000030811.15	ENSMUST00000206893.2	3449	10	3944	7	3944	0	3prime_fragment	FALSE	canonical	3	84	junction_3	16.7537309277665	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGGGGCCGCTGACTTTT	6976	False	NA	8	True	TATAAA	-12	NA	127351389	127368648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
ENSMUSG00000030811.15_50	chr7	+	1980	2	ISM	ENSMUSG00000030811.15	ENSMUST00000206893.2	3449	10	19135	7	19135	0	3prime_fragment	FALSE	canonical	3	128	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGGGGCCGCTGACTTTT	NA	False	NA	8	True	TATAAA	-12	NA	127366580	127368648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127366836_127366923
ENSMUSG00000030811.15_51	chr7	+	1020	1	ISM	ENSMUSG00000030811.15	ENSMUST00000186116.7	3641	11	22666	5	20178	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTAGCCGGGGCCGCTGA	NA	False	NA	3	True	TATAAA	-7	NA	127367623	127368643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127367600_127368600
ENSMUSG00000030814.18_0	chr7	-	4484	6	FSM	ENSMUSG00000030814.18	ENSMUST00000205977.2	891	6	-133	-3460	13	-1880	multi-exon	FALSE	canonical	3	31	junction_1	191.890176924198	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGTGTGTATCCACTGTTT	NA	False	NA	-10	True	GATAAA	-14	NA	127307944	127262507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127266219_127304898_127304985_127306347_127306510_127306604_127306714_127307051_127307131_127307607
ENSMUSG00000030814.18_1	chr7	-	3183	1	ISM	ENSMUSG00000030814.18	ENSMUST00000106282.8	6235	5	42265	1882	40784	-1882	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACGTGTGTATCCACTGT	8393	False	NA	-12	True	GATAAA	-12	NA	127265692	127262509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_127262500_127265700
ENSMUSG00000030814.18_5	chr7	-	969	6	FSM	ENSMUSG00000030814.18	ENSMUST00000061468.9	1132	6	161	2	13	-2	multi-exon	FALSE	canonical	3	471	junction_4	29.8971570554794	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTGTCATGTCATTT	NA	False	NA	NA	False	AATAAA	-12	NA	127307944	127304151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127304348_127304898_127304985_127306347_127306510_127306604_127306714_127307051_127307131_127307607
ENSMUSG00000030815.12_0	chr7	+	1942	3	FSM	ENSMUSG00000030815.12	ENSMUST00000151908.8	1918	3	-31	7	-7	-7	multi-exon	FALSE	canonical	3	119	junction_1	14	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127172544	127178451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127172629_127173025_127173139_127176706
ENSMUSG00000030815.12_15	chr7	+	2115	2	ISM	ENSMUSG00000030815.12	ENSMUST00000151908.8	1918	3	193	7	14	-7	3prime_fragment	FALSE	canonical	3	147	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127172768	127178451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127173139_127176706
ENSMUSG00000030815.12_16	chr7	+	1653	8	NIC	ENSMUSG00000030815.12	novel	1722	9	NA	NA	8	-1	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	35.729139768142	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCAGTGCCATGTCTGC	NA	False	NA	18	True	AATAAA	-19	NA	127172762	127182471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127173139_127176706_127176819_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030815.12_18	chr7	+	1771	9	FSM	ENSMUSG00000030815.12	ENSMUST00000121004.3	1840	9	62	7	8	-2	multi-exon	FALSE	canonical	3	46	junction_2	32.8954309137303	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCCAGTGCCATGTCTG	NA	False	NA	17	True	AATAAA	-18	NA	127172762	127182470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030815.12_2	chr7	+	1520	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-11	-1	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	38.180492401225	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCAGTGCCATGTCTGC	NA	False	NA	18	True	AATAAA	-19	NA	127172540	127182471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127172629_127173025_127173139_127176706_127176861_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030815.12_20	chr7	+	1701	9	FSM	ENSMUSG00000030815.12	ENSMUST00000154891.8	1722	9	14	7	14	-2	multi-exon	FALSE	canonical	3	16	junction_2	40.5768945953236	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCCAGTGCCATGTCTG	NA	False	NA	17	True	AATAAA	-18	NA	127172768	127182470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127173139_127176706_127176819_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030815.12_3	chr7	+	1484	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-17	-1	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	33.5016324229134	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCAGTGCCATGTCTGC	NA	False	NA	18	True	AATAAA	-19	NA	127172534	127182471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127172629_127173025_127173139_127176706_127176819_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030815.12_5	chr7	+	3514	8	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	12	-2	intron_retention	FALSE	canonical	3	106	junction_3	12.7022414862697	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCCAGTGCCATGTCTG	NA	False	NA	17	True	AATAAA	-18	NA	127172523	127182470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127172629_127173025_127173139_127176706_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030815.12_6	chr7	+	1596	10	FSM	ENSMUSG00000030815.12	ENSMUST00000033086.8	1570	10	-34	8	-10	-1	multi-exon	FALSE	canonical	3	46	junction_3	31.2018517968975	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCAGTGCCATGTCTGC	NA	False	NA	18	True	AATAAA	-19	NA	127172541	127182471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127172629_127173025_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030815.12_8	chr7	+	1861	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-11	-1	intron_retention	FALSE	canonical	3	65	junction_3	23.0475052879916	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCAGTGCCATGTCTGC	NA	False	NA	18	True	AATAAA	-19	NA	127172540	127182471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127172629_127173025_127173139_127176706_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030815.12_9	chr7	+	3585	8	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	11	-1	intron_retention	FALSE	canonical	2	7	junction_1	43.3613201094322	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCAGTGCCATGTCTGC	NA	False	NA	18	True	AATAAA	-19	NA	127172562	127182471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127172629_127172916_127173139_127176706_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030816.9_0	chr7	+	4071	20	FSM	ENSMUSG00000030816.9	ENSMUST00000205694.2	5279	20	1	1207	1	-2	multi-exon	FALSE	canonical	3	259	junction_5	49.1177002358039	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAAGCCCGTCCATTTGG	NA	False	NA	19	True	AATAAA	-20	NA	127187939	127202764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190486_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
ENSMUSG00000030816.9_2	chr7	+	4070	20	NNC	ENSMUSG00000030816.9	novel	5279	20	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	94.0642793129213	104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAAGCCCGTCCATTTGG	NA	False	NA	19	True	AATAAA	-20	NA	127187939	127202764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189885_127190486_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
ENSMUSG00000030816.9_6	chr7	+	4104	20	NNC	ENSMUSG00000030816.9	novel	5279	20	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_5	86.3204427500525	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAAGCCCGTCCATTTGG	NA	False	NA	19	True	AATAAA	-20	NA	127187939	127202764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190453_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
ENSMUSG00000030822.16_12	chr7	+	2388	11	FSM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	12	2	12	-1	multi-exon	FALSE	canonical	3	200	junction_10	17.7132718603876	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTGACTCCTTTGT	NA	False	NA	6	True	TATAAA	-11	NA	127070673	127075928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ENSMUSG00000030822.16_2	chr7	+	2083	12	ISM	ENSMUSG00000030822.16	ENSMUST00000106292.8	2175	13	646	7	-2	-3	3prime_fragment	FALSE	canonical	3	60	junction_1	50.8389126685683	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATATGTTTCTGACTCCT	NA	False	NA	2	True	TATAAA	-7	NA	127070188	127075924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ENSMUSG00000030823.7_5	chr7	-	2815	3	FSM	ENSMUSG00000030823.7	ENSMUST00000049052.4	3878	3	0	1063	0	-47	multi-exon	FALSE	canonical	2	4	junction_2	1	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGTATTGTATGTTAT	NA	False	NA	NA	False	CATAAA	-14	NA	126986338	126982494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126984803_126985691_126985806_126985945
ENSMUSG00000030824.18_1	chr7	-	2121	12	ISM	ENSMUSG00000030824.18	ENSMUST00000211765.2	4853	13	557	2650	466	0	3prime_fragment	FALSE	canonical	3	464	junction_7	38.5353760408741	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCTGCCCTCTTCCAA	NA	False	NA	-4	True	AATAAA	-19	NA	45159273	45142531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45143374_45143540_45143638_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129
ENSMUSG00000030824.18_2	chr7	-	2184	13	FSM	ENSMUSG00000030824.18	ENSMUST00000211765.2	4853	13	19	2650	-2	0	multi-exon	FALSE	canonical	3	464	junction_7	37.8483817355511	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCTGCCCTCTTCCAA	NA	False	NA	-4	True	AATAAA	-19	NA	45159811	45142531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45143374_45143540_45143638_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
ENSMUSG00000030825.20_0	chr7	+	1350	9	FSM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	43	7	-1	-4	multi-exon	FALSE	canonical	3	159	junction_3	205.455591308682	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATACCTTGGAGTGGTC	NA	False	NA	3	True	NA	NA	NA	45204359	45216738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45204491_45205478_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ENSMUSG00000030825.20_12	chr7	+	1182	5	ISM	ENSMUSG00000030825.20	ENSMUST00000210997.2	1315	9	3185	4	23	-4	3prime_fragment	FALSE	canonical	3	557	junction_3	22.2864869371554	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATACCTTGGAGTGGTC	NA	False	NA	3	True	NA	NA	NA	45208652	45216738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ENSMUSG00000030825.20_8	chr7	+	1219	8	ISM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	1162	7	11	-4	3prime_fragment	FALSE	canonical	3	159	junction_2	204.709849418585	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATACCTTGGAGTGGTC	NA	False	NA	3	True	NA	NA	NA	45205478	45216738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ENSMUSG00000030826.20_0	chr7	+	1564	11	FSM	ENSMUSG00000030826.20	ENSMUST00000033098.16	1772	11	196	12	-1	-7	multi-exon	TRUE	canonical	3	349	junction_4	47.8895604490164	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAACAAGACATTGGCTA	2451	False	NA	NA	False	AATAAA	-6	NA	45219772	45239123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45219824_45224854_45224930_45225222_45225427_45234340_45234452_45234534_45234655_45234837_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
ENSMUSG00000030826.20_10	chr7	+	1510	10	ISM	ENSMUSG00000030826.20	ENSMUST00000211173.2	1684	12	2565	11	212	-7	3prime_fragment	FALSE	canonical	3	349	junction_3	48.9325562558139	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAACAAGACATTGGCTA	4361	False	NA	NA	False	AATAAA	-6	NA	45224857	45239123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45224930_45225222_45225427_45234340_45234452_45234534_45234655_45234837_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
ENSMUSG00000030830.19_3	chr7	+	2599	20	ISM	ENSMUSG00000030830.19	ENSMUST00000118405.2	3909	21	626	1248	626	161	3prime_fragment	FALSE	canonical	1	2	junction_5	3.49910950286203	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTCAGGACCCAGTAATAC	NA	False	NA	NA	False	AATAAA	-16	NA	126909315	126933061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_126909509_126909797_126909936_126910389_126910588_126910714_126910846_126913230_126913392_126913483_126913636_126916448_126916536_126921066_126921121_126921223_126921295_126921652_126921795_126923716_126923828_126924193_126924274_126924368_126924456_126926880_126926957_126927358_126927473_126927670_126927728_126927824_126927927_126928596_126928693_126929300_126929412_126932623
ENSMUSG00000030830.19_6	chr7	+	3181	16	ISM	ENSMUSG00000030830.19	ENSMUST00000118405.2	3909	21	4538	9	4538	-9	3prime_fragment	FALSE	canonical	1	2	junction_1	3.10268700752536	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAGCAGCTTATGGGG	NA	False	NA	NA	False	AATAAA	-8	NA	126913227	126934300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_126913392_126913483_126913636_126916448_126916536_126921066_126921121_126921223_126921295_126921652_126921795_126923716_126923828_126924193_126924274_126924368_126924456_126926880_126926957_126927358_126927473_126927670_126927728_126927824_126927927_126928596_126928693_126929300_126929412_126932623
ENSMUSG00000030834.8_2	chr7	-	272	2	FSM	ENSMUSG00000030834.8	ENSMUST00000210962.2	257	2	-19	4	-19	-4	multi-exon	FALSE	canonical	3	10	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGATTCCTCATCCTA	NA	False	NA	NA	False	ATTAAA	-15	NA	45622762	45616986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45617145_45622648
ENSMUSG00000030835.7_0	chr7	+	4206	31	FSM	ENSMUSG00000030835.7	ENSMUST00000033121.7	4257	31	44	7	44	-7	multi-exon	FALSE	canonical	3	214	junction_14	37.3234510730184	668	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGCATAGTGTGGGG	8137	False	NA	22	True	AATAAA	-22	NA	45683165	45733629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45683397_45686982_45687073_45687966_45688013_45690892_45690994_45691955_45692063_45693654_45693728_45694684_45694838_45695272_45695411_45696332_45696423_45699693_45699800_45699969_45700121_45703925_45704101_45706018_45706161_45706500_45706633_45707839_45707977_45710302_45710391_45711192_45711257_45712390_45712487_45715585_45715805_45715883_45715967_45717802_45717963_45718095_45718223_45719346_45719461_45720198_45720327_45721921_45722064_45725498_45725583_45727449_45727561_45728914_45729017_45730818_45730939_45732658_45732752_45733026
ENSMUSG00000030838.21_0	chr7	-	896	6	ISM	ENSMUSG00000030838.21	ENSMUST00000176371.2	1865	20	28486	-296	-58	2	3prime_fragment	FALSE	canonical	0	0	junction_2	4.56070170039655	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGCTTCTGGGGGTGAA	NA	False	NA	NA	False	AATAAA	-16	NA	45851252	45844778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45845159_45846619_45846676_45847776_45847887_45850397_45850498_45850792_45850847_45851056
ENSMUSG00000030839.13_0	chr7	-	1423	11	FSM	ENSMUSG00000030839.13	ENSMUST00000033127.12	1465	11	21	21	18	-4	multi-exon	FALSE	canonical	3	75	junction_10	7.18609768928867	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAAGATTCCCTGGAGA	NA	False	NA	-31	True	AATAAA	-14	NA	46289210	46092598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46289136
ENSMUSG00000030839.13_11	chr7	-	2642	11	ISM	ENSMUSG00000030839.13	ENSMUST00000216505.2	2551	12	21	68307	21	-68257	5prime_fragment	FALSE	canonical	1	1	junction_1	26.8849400222504	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAATAAACAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	46289207	46160901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_46162485_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46289136
ENSMUSG00000030839.13_2	chr7	-	1724	11	NIC	ENSMUSG00000030839.13	novel	1465	11	NA	NA	-18	-4	combination_of_known_junctions	FALSE	canonical	2	9	junction_10	24.9110417285187	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAAGATTCCCTGGAGA	NA	False	NA	-31	True	AATAAA	-14	NA	46289073	46092598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46288698
ENSMUSG00000030839.13_6	chr7	-	1346	10	NIC	ENSMUSG00000030839.13	novel	1465	11	NA	NA	32	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	28.5090412342956	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAAGATTCCCTGGAGA	NA	False	NA	-31	True	AATAAA	-14	NA	46289196	46092598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46289136
ENSMUSG00000030842.13_1	chr7	+	1072	5	FSM	ENSMUSG00000030842.13	ENSMUST00000033131.12	1119	5	28	19	28	-19	multi-exon	FALSE	canonical	3	733	junction_4	69.0230939613692	483	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTGTTGCTGGTTCAAC	7055	False	NA	9	True	GATAAA	-13	NA	101555138	101561091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559754_101560479
ENSMUSG00000030844.12_0	chr7	-	704	3	FSM	ENSMUSG00000030844.12	ENSMUST00000134144.2	458	3	16	-262	16	-2	multi-exon	FALSE	canonical	1	3	junction_2	8	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTTAGTCATTTCTAC	9767	False	NA	NA	False	ATTAAA	-22	NA	127995393	127975346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127975767_127990687_127990832_127995253
ENSMUSG00000030844.12_2	chr7	-	870	5	FSM	ENSMUSG00000030844.12	ENSMUST00000033133.12	880	5	1	9	1	-9	multi-exon	FALSE	canonical	3	8	junction_4	4.32290411644765	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTGAACCCTTTAGTCA	NA	False	NA	NA	False	ATTAAA	-15	NA	128019896	127975353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127975767_127990687_127990832_128004893_128004981_128006082_128006202_128019789
ENSMUSG00000030846.16_0	chr7	-	1593	12	FSM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	-21	8	-21	-8	multi-exon	FALSE	canonical	3	163	junction_7	29.2730095977351	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACAATTCTGACTATAA	NA	False	NA	NA	False	AATAAA	-7	NA	128063100	128044011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ENSMUSG00000030846.16_1	chr7	-	1829	1	ISM	ENSMUSG00000030846.16	ENSMUST00000106226.9	4451	12	20065	2	3298	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGCTTTCTCTTAGTGT	NA	False	NA	-8	True	AATAAA	-14	NA	128043331	128041502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_128041500_128043300
ENSMUSG00000030846.16_11	chr7	-	2141	11	FSM	ENSMUSG00000030846.16	ENSMUST00000141079.8	4266	11	46	2079	46	7	multi-exon	FALSE	canonical	3	163	junction_6	28.929051142407	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTAAAATAAAGTCAATAAAG	NA	False	NA	NA	False	NA	NA	NA	128063330	128044027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_128044384_128045530_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ENSMUSG00000030846.16_14	chr7	-	343	1	ISM	ENSMUSG00000030846.16	ENSMUST00000106226.9	4451	12	19048	2505	2281	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGACTATAAATTTTG	NA	False	NA	NA	False	AATAAA	-13	NA	128044348	128044005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_128044000_128044300
ENSMUSG00000030846.16_16	chr7	-	1836	13	FSM	ENSMUSG00000030846.16	ENSMUST00000106228.8	2835	13	111	888	90	-11	multi-exon	FALSE	canonical	3	12	junction_12	81.5772895275803	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGACAATTCTGACTA	NA	False	NA	NA	False	AATAAA	-4	NA	128063286	128044014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128060320_128060381_128062848
ENSMUSG00000030846.16_33	chr7	-	1124	9	ISM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	12977	11	-32	-11	3prime_fragment	FALSE	canonical	3	163	junction_7	31.8119474411737	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGACAATTCTGACTA	NA	False	NA	NA	False	AATAAA	-4	NA	128050102	128044014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065
ENSMUSG00000030846.16_8	chr7	-	4420	9	NIC	ENSMUSG00000030846.16	novel	2319	13	NA	NA	68	-8	intron_retention	FALSE	canonical	3	185	junction_8	24.0204990580962	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACAATTCTGACTATAA	NA	False	NA	NA	False	AATAAA	-7	NA	128063308	128044011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_128044384_128045530_128046129_128046336_128046422_128046535_128046632_128047374_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ENSMUSG00000030846.16_9	chr7	-	889	6	ISM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	15639	2	-11	-2	3prime_fragment	FALSE	canonical	3	187	junction_2	26.4529771481397	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGACTATAAATTTTG	NA	False	NA	NA	False	AATAAA	-13	NA	128047440	128044005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374
ENSMUSG00000030847.9_0	chr7	+	2547	4	FSM	ENSMUSG00000030847.9	ENSMUST00000033136.9	2562	4	10	5	10	-5	multi-exon	FALSE	canonical	3	128	junction_2	8.2192186706253	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTTTTTTTGTGGTT	7152	False	NA	12	True	AATAAA	-17	NA	128125349	128148700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_128125769_128141696_128142036_128143530_128143933_128147313
ENSMUSG00000030847.9_3	chr7	+	1046	1	ISM	ENSMUSG00000030847.9	ENSMUST00000033136.9	2562	4	22316	4	22316	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTTTTTTTGTGGTTT	212	False	NA	13	True	AATAAA	-18	NA	128147655	128148701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_128147700_128148700
ENSMUSG00000030849.19_0	chr7	-	4340	17	NIC	ENSMUSG00000030849.19	novel	3323	18	NA	NA	26	-2	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_9	4.56720647661128	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTCGTGTCTTACCAAA	NA	False	NA	NA	False	AATAAA	-22	NA	129867949	129764182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_129765854_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404_129779596_129782094_129782206_129784370_129784493_129786958_129787111_129797901_129798105_129800148_129800294_129802712_129802904_129820727_129820852_129830352_129830523_129842929_129843008_129863478_129863797_129867523
ENSMUSG00000030849.19_1	chr7	-	4457	17	NIC	ENSMUSG00000030849.19	novel	3323	18	NA	NA	0	-3	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_9	4.83113276054385	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACTCGTGTCTTACCAA	NA	False	NA	NA	False	AATAAA	-21	NA	129867975	129764183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_129765946_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404_129779596_129782094_129782206_129784370_129784493_129786958_129787111_129797901_129798105_129800148_129800294_129802712_129802904_129820727_129820852_129830352_129830523_129842929_129843008_129863478_129863797_129867523
ENSMUSG00000030849.19_2	chr7	-	4667	18	NIC	ENSMUSG00000030849.19	novel	3323	18	NA	NA	-22	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	4.98232168890816	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTCGTGTCTTACCAAA	NA	False	NA	NA	False	AATAAA	-22	NA	129868015	129764182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_129765854_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404_129779596_129782094_129782206_129784370_129784493_129786958_129787111_129797907_129798105_129800148_129800294_129802712_129802904_129820727_129820852_129830352_129830523_129842929_129843008_129844107_129844375_129863478_129863797_129867523
ENSMUSG00000030849.19_3	chr7	-	4274	16	NIC	ENSMUSG00000030849.19	novel	3323	18	NA	NA	1	28	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_9	4.99065793925677	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAATAAATGTCACGCAG	NA	False	NA	NA	False	AATAAA	-31	NA	129867992	129764213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_129765854_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404_129779596_129782094_129782206_129784370_129784493_129786958_129787111_129797901_129798105_129800148_129800294_129802712_129802904_129820727_129820852_129830352_129830523_129863478_129863797_129867523
ENSMUSG00000030849.19_4	chr7	-	4659	18	FSM	ENSMUSG00000030849.19	ENSMUST00000122054.8	3323	18	-80	-1256	-8	-2	multi-exon	FALSE	non_canonical	0	0	junction_9	5.16643412059917	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTCGTGTCTTACCAAA	NA	False	NA	NA	False	AATAAA	-22	NA	129868001	129764182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_129765854_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404_129779596_129782094_129782206_129784370_129784493_129786958_129787111_129797901_129798105_129800148_129800294_129802712_129802904_129820727_129820852_129830352_129830523_129842929_129843008_129844107_129844375_129863478_129863797_129867523
ENSMUSG00000030849.19_6	chr7	-	4721	18	NIC	ENSMUSG00000030849.19	novel	3323	18	NA	NA	-21	22	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	5.17647058823529	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAGACAAAATAAATGTC	NA	False	NA	NA	False	AATAAA	-25	NA	129868014	129764219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_129765946_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404_129779596_129782094_129782206_129784370_129784493_129786958_129787111_129797907_129798105_129800148_129800294_129802712_129802904_129820727_129820852_129830352_129830523_129842929_129843008_129844107_129844375_129863478_129863797_129867523
ENSMUSG00000030850.18_0	chr7	-	4670	12	FSM	ENSMUSG00000030850.18	ENSMUST00000035458.15	4685	12	-8	23	-8	-23	multi-exon	FALSE	canonical	3	144	junction_5	43.8843333177548	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAATACTAACAAT	NA	False	NA	-38	True	AAAAAG	-4	NA	130121268	129993245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
ENSMUSG00000030850.18_10	chr7	-	4821	13	FSM	ENSMUSG00000030850.18	ENSMUST00000216011.2	1680	13	-85	-3056	-16	-9	multi-exon	FALSE	canonical	3	14	junction_6	69.1801191737112	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATAAAGCTGTGTCGGC	NA	False	NA	-24	True	AATAAA	-7	NA	130121276	129993231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
ENSMUSG00000030850.18_2	chr7	-	4669	12	FSM	ENSMUSG00000030850.18	ENSMUST00000033139.15	4735	12	43	23	-7	-23	multi-exon	FALSE	canonical	3	115	junction_5	49.9651117950737	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAATACTAACAAT	NA	False	NA	-38	True	AAAAAG	-4	NA	130121267	129993245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
ENSMUSG00000030850.18_3	chr7	-	4600	12	FSM	ENSMUSG00000030850.18	ENSMUST00000178534.8	1530	12	-28	-3042	-28	-23	multi-exon	FALSE	canonical	3	22	junction_11	65.693629010445	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAATACTAACAAT	NA	False	NA	-38	True	AAAAAG	-4	NA	130121719	129993245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121606
ENSMUSG00000030850.18_5	chr7	-	2660	1	ISM	ENSMUSG00000030850.18	ENSMUST00000035458.15	4685	12	125355	23	24615	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAATACTAACAAT	NA	False	NA	-38	True	AAAAAG	-4	NA	129995905	129993245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_129993200_129995900
ENSMUSG00000030851.16_0	chr7	+	1180	8	FSM	ENSMUSG00000030851.16	ENSMUST00000014545.11	1370	8	38	152	38	-110	multi-exon	FALSE	canonical	1	3	junction_1	3.73619909446343	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATCAATCTCAAGGCTAG	NA	False	NA	NA	False	AATAAA	-17	NA	46510664	46527414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_46510726_46511186_46511320_46515832_46515951_46519022_46519197_46522335_46522510_46525099_46525218_46525897_46526022_46527136
ENSMUSG00000030852.19_23	chr7	+	3652	16	NIC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	-74	-2	intron_retention	FALSE	canonical	3	48	junction_1	73.3327272702229	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCGAGTGTGGCTGTGAG	NA	False	NA	27	True	AATAAA	-39	NA	130247885	130366512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_130248161_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ENSMUSG00000030852.19_24	chr7	+	3754	17	NIC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	-50	-2	intron_retention	FALSE	canonical	3	154	junction_1	59.7013400184619	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCGAGTGTGGCTGTGAG	NA	False	NA	27	True	AATAAA	-39	NA	130247909	130366512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_130248161_130264745_130264872_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ENSMUSG00000030852.19_25	chr7	+	3718	15	NIC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	24	-1	intron_retention	FALSE	canonical	1	5	junction_1	82.3265337741442	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGAGTGTGGCTGTGAGT	NA	False	NA	28	True	AATAAA	-40	NA	130247682	130366513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_130248161_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ENSMUSG00000030852.19_57	chr7	+	3489	15	FSM	ENSMUSG00000030852.19	ENSMUST00000207282.2	3464	15	-26	1	-26	-1	multi-exon	FALSE	canonical	3	28	junction_1	76.8787808096324	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGAGTGTGGCTGTGAGT	NA	False	NA	28	True	AATAAA	-40	NA	130294468	130366513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_130294718_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ENSMUSG00000030852.19_69	chr7	+	2637	13	ISM	ENSMUSG00000030852.19	ENSMUST00000207282.2	3464	15	36223	2	238	-2	3prime_fragment	FALSE	canonical	3	280	junction_9	29.1046960701075	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCGAGTGTGGCTGTGAG	NA	False	NA	27	True	AATAAA	-39	NA	130330717	130366512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
ENSMUSG00000030861.16_0	chr7	+	3292	11	FSM	ENSMUSG00000030861.16	ENSMUST00000015829.15	6081	11	48	2741	48	-6	multi-exon	FALSE	canonical	3	100	junction_4	19.6022957839127	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGGAGAATTCTCCCTT	NA	False	NA	15	True	AATAAA	-19	NA	131012377	131047932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_131012517_131026200_131026361_131027503_131027605_131030157_131030365_131031675_131031847_131033665_131033792_131035998_131036092_131039130_131039221_131042930_131043069_131045197_131045298_131045965
ENSMUSG00000030861.16_18	chr7	+	1438	1	ISM	ENSMUSG00000030861.16	ENSMUST00000015829.15	6081	11	34165	2741	12765	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGGAGAATTCTCCCTT	2198	False	NA	15	True	AATAAA	-19	NA	131046494	131047932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_131046500_131047900
ENSMUSG00000030867.8_2	chr7	+	2165	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	36	-2	-32	2	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	1579	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTTTCTCTTTTTGGT	NA	False	NA	58	True	ATTAAA	-16	NA	121758697	121769098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
ENSMUSG00000030868.7_0	chr7	+	1396	5	NIC	ENSMUSG00000030868.7	novel	1532	6	NA	NA	8	-12	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	141.324758977329	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTAAAACATCCTGGTTTA	NA	False	NA	2	True	AATAAA	-3	NA	121732284	121748255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121747279
ENSMUSG00000030868.7_1	chr7	+	1503	6	FSM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	21	8	8	-8	multi-exon	FALSE	canonical	3	258	junction_5	42.3008274150755	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATCCTGGTTTAGGCT	NA	False	NA	6	True	AATAAA	-7	NA	121732284	121748259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
ENSMUSG00000030868.7_7	chr7	+	2406	5	FSM	ENSMUSG00000030868.7	ENSMUST00000123602.2	2506	5	32	68	14	-68	multi-exon	FALSE	canonical	3	258	junction_4	38.4740172064213	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGTATCTGTTGTTTTA	NA	False	NA	-54	True	AGTAAA	-4	NA	121732308	121748199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
ENSMUSG00000030869.12_0	chr7	-	953	5	FSM	ENSMUSG00000030869.12	ENSMUST00000033157.10	3479	5	50	2476	-8	579	multi-exon	FALSE	canonical	3	149	junction_1	2248.42489311963	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTAAGTTCTGTGTGCA	6408	False	NA	NA	False	AATACA	-9	NA	121701059	121687101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_121687562_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000030869.12_3	chr7	-	619	5	FSM	ENSMUSG00000030869.12	ENSMUST00000123296.8	1416	5	15	782	-8	-5	multi-exon	FALSE	canonical	3	4604	junction_1	400.950978923858	1212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTAGTATTTTTCTCAA	6408	False	NA	-18	True	AATAAA	-9	NA	121701059	121690060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000030869.12_6	chr7	-	728	5	NNC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	10	-5	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_1	2197.68361007676	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTAGTATTTTTCTCAA	6403	False	NA	-18	True	AATAAA	-9	NA	121701064	121690060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_121690291_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000030870.13_0	chr7	+	4592	7	FSM	ENSMUSG00000030870.13	ENSMUST00000033158.6	4849	7	249	8	-16	-8	multi-exon	FALSE	canonical	3	624	junction_1	33.5642005052341	1119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTAATTGTGTCTCTCT	NA	False	NA	1	True	ATTAAA	-6	NA	121666646	121681409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_121666708_121666886_121667217_121668003_121668213_121670924_121670991_121671132_121671239_121675330_121675414_121677672
ENSMUSG00000030870.13_25	chr7	+	4533	6	ISM	ENSMUSG00000030870.13	ENSMUST00000033158.6	4849	7	489	6	217	-6	3prime_fragment	FALSE	canonical	3	672	junction_3	19.7281524730523	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTAATTGTGTCTCTCTTT	NA	False	NA	3	True	ATTAAA	-8	NA	121666886	121681411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_121667217_121668003_121668213_121670924_121670991_121671132_121671239_121675330_121675414_121677672
ENSMUSG00000030870.13_38	chr7	+	2729	1	ISM	ENSMUSG00000030870.13	ENSMUST00000033158.6	4849	7	12288	3	10564	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTGTGTCTCTCTTTCCT	NA	False	NA	6	True	ATTAAA	-11	NA	121678685	121681414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_121678700_121681400
ENSMUSG00000030871.12_0	chr7	-	1837	9	FSM	ENSMUSG00000030871.12	ENSMUST00000033159.4	2046	9	208	1	15	-1	multi-exon	FALSE	canonical	3	113	junction_5	13.5317912709294	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGGTGTTTTGCCTCCA	NA	False	NA	-2	True	TTTAAA	-17	NA	121666278	121638044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121645956_121647324_121647798_121654781_121654972_121662151_121662308_121666127
ENSMUSG00000030871.12_6	chr7	-	3369	8	FSM	ENSMUSG00000030871.12	ENSMUST00000147397.2	3222	8	13	-160	13	160	multi-exon	FALSE	canonical	3	137	junction_2	8.41281820819169	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACAGCCAGTGCGTCAT	NA	False	NA	-6	True	NA	NA	NA	121666280	121637883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121647798_121654781_121654972_121662151_121662308_121666127
ENSMUSG00000030872.15_0	chr7	-	2826	17	FSM	ENSMUSG00000030872.15	ENSMUST00000033160.15	4915	17	43	2046	1	-3	multi-exon	FALSE	canonical	3	748	junction_16	35.03391214238	1665	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGCCTGGTGTTGAGT	NA	False	NA	-8	True	AATAAA	-11	NA	121620402	121587990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513_121596645_121596983_121597013_121597285_121597376_121598080_121598207_121599341_121599424_121601297_121601436_121601889_121601971_121603109_121603211_121606479_121606604_121607553_121607653_121609905_121609982_121611371_121611457_121620211
ENSMUSG00000030876.8_0	chr7	+	1682	5	FSM	ENSMUSG00000030876.8	ENSMUST00000033163.8	1823	5	136	5	136	-5	multi-exon	FALSE	canonical	3	223	junction_4	46.4435140789325	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACTCTGGCACCATGTT	9563	False	NA	2	True	AATAAA	-11	NA	120633803	120676053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_120634199_120647060_120647252_120651309_120651520_120656437_120656623_120675352
ENSMUSG00000030876.8_1	chr7	+	1683	5	NNC	ENSMUSG00000030876.8	novel	1823	5	NA	NA	131	-6	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_4	108.278287297131	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGACTCTGGCACCATGT	9558	False	NA	1	True	AATAAA	-10	NA	120633798	120676052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_120634199_120647060_120647252_120651309_120651520_120656437_120656623_120675355
ENSMUSG00000030878.12_0	chr7	-	2490	5	FSM	ENSMUSG00000030878.12	ENSMUST00000033169.9	2525	5	28	7	1	-7	multi-exon	FALSE	canonical	3	32	junction_2	6.89202437604511	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACAAATGGGTCTACGTCT	NA	False	NA	NA	False	AATAAA	-16	NA	120581507	120556265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_120558021_120559314_120559480_120559732_120559882_120569548_120569662_120581199
ENSMUSG00000030879.11_1	chr7	-	729	3	FSM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	95	6476	-5	-2	multi-exon	FALSE	canonical	3	2255	junction_2	27.5	717	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATATTGACTTTCTTGTC	NA	False	NA	-30	True	GATAAA	-18	NA	105460211	105458888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105459352_105459656_105459726_105460014
ENSMUSG00000030880.15_2	chr7	+	2777	21	FSM	ENSMUSG00000030880.15	ENSMUST00000033173.15	4194	21	3	1414	3	197	multi-exon	FALSE	canonical	3	284	junction_16	33.3787357459805	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTTGGGTTTCTGAGGC	NA	False	NA	NA	False	ATTAAA	-16	NA	120517009	120545241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698
ENSMUSG00000030880.15_5	chr7	+	3402	22	NNC	ENSMUSG00000030880.15	novel	4194	21	NA	NA	5	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_21	76.9953616413724	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAAGTCTTCAGAATGT	NA	False	NA	NA	False	NA	NA	NA	120517011	120546651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698_120545544_120546326
ENSMUSG00000030881.16_0	chr7	-	1788	8	FSM	ENSMUSG00000030881.16	ENSMUST00000131446.8	3275	8	62	1425	-3	-4	multi-exon	FALSE	canonical	3	112	junction_3	9.16515138991168	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGGCCCAGTGAGGT	NA	False	NA	NA	False	AATAAA	-9	NA	105289561	105284834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
ENSMUSG00000030881.16_15	chr7	-	1724	8	FSM	ENSMUSG00000030881.16	ENSMUST00000084782.10	2254	8	21	509	-4	-4	multi-exon	FALSE	canonical	1	5	junction_7	43.718953999101	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGGCCCAGTGAGGT	NA	False	NA	NA	False	AATAAA	-9	NA	105289537	105284834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288633_105289451
ENSMUSG00000030881.16_3	chr7	-	553	1	ISM	ENSMUSG00000030881.16	ENSMUST00000131446.8	3275	8	4236	1425	1722	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGGCCCAGTGAGGT	NA	False	NA	NA	False	AATAAA	-9	NA	105285387	105284834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_105284800_105285400
ENSMUSG00000030881.16_6	chr7	-	3591	7	NIC	ENSMUSG00000030881.16	novel	3275	8	NA	NA	3	-4	intron_retention	FALSE	canonical	3	112	junction_2	9.86013297183269	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATGTACAGTTTTTATTG	NA	False	NA	NA	False	NA	NA	NA	105289530	105283417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
ENSMUSG00000030881.16_7	chr7	-	1956	8	NIC	ENSMUSG00000030881.16	novel	3275	8	NA	NA	-4	-4	intron_retention	FALSE	canonical	3	37	junction_3	33.0787557449287	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGGCCCAGTGAGGT	NA	False	NA	NA	False	AATAAA	-9	NA	105289562	105284834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_105285601_105286017_105286193_105286327_105286486_105286858_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
ENSMUSG00000030881.16_8	chr7	-	1514	5	NIC	ENSMUSG00000030881.16	novel	4448	5	NA	NA	-183	-1	intron_retention	FALSE	canonical	3	37	junction_3	40.2577632264884	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCAGTGAGGTCAATTT	NA	False	NA	NA	False	AATAAA	-15	NA	105287435	105284828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_105285601_105286017_105286193_105286327_105286486_105286858_105287248_105287415
ENSMUSG00000030884.13_0	chr7	+	1588	14	FSM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	55	253	-9	-253	multi-exon	FALSE	canonical	3	1087	junction_9	72.1248916810278	1144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTCTTCTTGCATTCT	NA	False	NA	16	True	AATAAA	-12	NA	120234453	120258494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
ENSMUSG00000030888.15_0	chr7	-	2271	7	FSM	ENSMUSG00000030888.15	ENSMUST00000033179.14	3053	7	304	478	-104	196	multi-exon	FALSE	canonical	3	246	junction_4	21.202725191719	430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTCGTTGATCTCAC	9883	False	NA	-11	True	AATAAA	-13	NA	105385684	105381414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105382351_105382558_105382656_105382738_105382846_105382974_105383105_105383206_105383661_105383896_105384264_105385504
ENSMUSG00000030890.17_0	chr7	+	1722	13	FSM	ENSMUSG00000030890.17	ENSMUST00000033182.10	1795	13	64	9	-15	-2	multi-exon	FALSE	canonical	3	265	junction_1	33.4937805171846	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAACAGGCTCGTGTGGG	NA	False	NA	19	True	AATAAA	-9	NA	105385862	105392123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ENSMUSG00000030890.17_1	chr7	+	1729	13	NNC	ENSMUSG00000030890.17	novel	1795	13	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	92.258242630853	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGGCTCGTGTGGGGA	NA	False	NA	21	True	AATAAA	-11	NA	105385856	105392125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_105385924_105386307_105386445_105389384_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ENSMUSG00000030890.17_15	chr7	+	1664	12	ISM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	375	4	-1	0	3prime_fragment	FALSE	canonical	3	270	junction_7	30.9136360294609	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGGCTCGTGTGGGGA	NA	False	NA	21	True	AATAAA	-11	NA	105386306	105392125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ENSMUSG00000030894.6_0	chr7	-	2418	13	FSM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	26	1114	4	-6	multi-exon	FALSE	canonical	3	275	junction_12	25.3212690571912	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTGCTTGAGTGATT	NA	False	NA	-2	True	AATAAA	-24	NA	105401416	105395131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
ENSMUSG00000030894.6_1	chr7	-	2278	12	NIC	ENSMUSG00000030894.6	novel	3558	13	NA	NA	4	-6	combination_of_known_junctions	FALSE	canonical	3	32	junction_10	89.1434909764649	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTGCTTGAGTGATT	NA	False	NA	-2	True	AATAAA	-24	NA	105401416	105395131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105401188_105401261_105401377
ENSMUSG00000030894.6_4	chr7	-	3481	12	ISM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	181	13	38	-13	3prime_fragment	FALSE	canonical	3	296	junction_11	21.0119997199554	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTAAAAAAAAAGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	105401261	105394030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188
ENSMUSG00000030897.6_0	chr7	+	2475	6	FSM	ENSMUSG00000030897.6	ENSMUST00000033187.6	2484	6	8	1	8	-1	multi-exon	FALSE	canonical	1	1	junction_2	2.13541565040626	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGGCACTGGGTTTATC	NA	False	NA	NA	False	NA	NA	NA	105053782	105057948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_105053961_105054095_105054198_105054376_105054484_105054688_105055335_105056007_105056358_105056856
ENSMUSG00000030898.16_1	chr7	+	2350	5	FSM	ENSMUSG00000030898.16	ENSMUST00000033189.6	2573	5	219	4	133	-4	multi-exon	FALSE	canonical	3	14	junction_2	1.6583123951777	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACCTAAGGCTCAGATTA	NA	False	NA	NA	False	GATAAA	-11	NA	105075156	105085542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_105075383_105082789_105083042_105083201_105083452_105083726_105083903_105084096
ENSMUSG00000030905.6_0	chr7	-	1260	8	FSM	ENSMUSG00000030905.6	ENSMUST00000033198.6	1383	8	116	7	116	-7	multi-exon	FALSE	canonical	1	2	junction_4	2.55550625999976	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTGTCCTTTGACAA	NA	False	NA	-6	True	AATAAA	-14	NA	119801218	119785609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_119785922_119788948_119789034_119789674_119789797_119794547_119794732_119796872_119796975_119798470_119798534_119800299_119800451_119800977
ENSMUSG00000030917.14_0	chr7	+	1379	5	FSM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	33	72	-9	-72	multi-exon	FALSE	canonical	3	63	junction_3	8.8423695919137	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCAAACCAGAGCCTGTG	NA	False	NA	-67	True	AATAAA	-28	NA	119701608	119720137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_119701739_119703852_119704053_119714608_119714778_119715442_119715582_119719396
ENSMUSG00000030917.14_2	chr7	+	573	1	ISM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	17997	64	17455	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGCCTGTGCGATGATT	NA	False	NA	-59	True	AATAAA	-36	NA	119719572	119720145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_119719600_119720100
ENSMUSG00000030922.13_1	chr7	+	893	4	FSM	ENSMUSG00000030922.13	ENSMUST00000106518.9	875	4	2	-20	2	0	multi-exon	FALSE	canonical	3	29	junction_1	16.3095064303001	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTGTTGTTTTGTTGAT	NA	False	NA	9	True	TATAAA	-20	NA	119495085	119515976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_119495114_119509026_119509186_119513395_119513489_119515363
ENSMUSG00000030922.13_2	chr7	+	1015	4	FSM	ENSMUSG00000030922.13	ENSMUST00000208202.2	936	4	-3	-76	0	-7	multi-exon	FALSE	canonical	3	11	junction_1	24.5356882927706	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATCATATTTGTTGTTT	NA	False	NA	2	True	TATAAA	-13	NA	119495089	119515969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_119495114_119508893_119509186_119513395_119513489_119515363
ENSMUSG00000030922.13_3	chr7	+	1083	5	FSM	ENSMUSG00000030922.13	ENSMUST00000054440.11	752	5	-14	-317	1	-3	multi-exon	FALSE	canonical	3	10	junction_1	26.343879744639	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATATTTGTTGTTTTGTT	NA	False	NA	6	True	TATAAA	-17	NA	119495090	119515973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_119495114_119499333_119499532_119509026_119509186_119513395_119513489_119515363
ENSMUSG00000030922.13_5	chr7	+	1210	5	NIC	ENSMUSG00000030922.13	novel	752	5	NA	NA	4	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	29.0301567339896	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATATTTGTTGTTTTGTT	NA	False	NA	6	True	TATAAA	-17	NA	119495096	119515973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_119495114_119499333_119499532_119508893_119509186_119513395_119513489_119515363
ENSMUSG00000030922.13_9	chr7	+	864	3	ISM	ENSMUSG00000030922.13	ENSMUST00000106516.2	1069	4	9696	4	9673	-1	3prime_fragment	FALSE	canonical	3	56	junction_1	6	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTGTTGTTTTGTTGA	NA	False	NA	8	True	TATAAA	-19	NA	119509026	119515975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_119509186_119513395_119513489_119515363
ENSMUSG00000030924.17_14	chr7	+	2641	19	NIC	ENSMUSG00000030924.17	novel	2492	20	NA	NA	5	-6	combination_of_known_junctions	FALSE	canonical	3	9	junction_12	9.76703955804394	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTCAAAACATTTCCTC	NA	False	NA	6	True	AATAAA	-6	NA	119393357	119448155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_119393726_119398787_119398901_119400452_119400580_119401963_119402061_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525_119426600_119427314_119427430_119431893_119431999_119433486_119433625_119442464_119442558_119443070_119443288_119443481_119443670_119444605_119444725_119447954
ENSMUSG00000030924.17_17	chr7	+	2450	8	NNC	ENSMUSG00000030924.17	novel	527	3	NA	NA	-4195	-6	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	7.48058712090631	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTCAAAACATTTCCTC	NA	False	NA	6	True	AATAAA	-6	NA	119429384	119448155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_119430774_119431893_119431999_119433486_119433625_119442464_119442558_119443070_119443288_119443481_119443670_119444605_119444725_119447954
ENSMUSG00000030924.17_19	chr7	+	2096	8	ISM	ENSMUSG00000030924.17	ENSMUST00000133758.9	2019	14	-115	20725	-2	203	intron_retention	FALSE	canonical	2	10	junction_1	9.54473890770861	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTATTTTACCTTTGTAGT	NA	False	NA	NA	False	AATAAA	-11	NA	119393226	119427436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_119393726_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525
ENSMUSG00000030924.17_2	chr7	+	2352	11	ISM	ENSMUSG00000030924.17	ENSMUST00000106520.9	2492	20	75	20730	-34	203	intron_retention	FALSE	canonical	3	15	junction_1	8.75728268357257	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTATTTTACCTTTGTAGT	NA	False	NA	NA	False	AATAAA	-11	NA	119393307	119427436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_119393726_119398787_119398901_119400452_119400580_119401963_119402061_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525
ENSMUSG00000030929.18_17	chr7	-	1906	1	ISM	ENSMUSG00000030929.18	ENSMUST00000125595.8	6025	7	8222	1275	2199	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAGACATGTAGAACAT	NA	False	NA	-21	True	AATAAA	-15	NA	119384976	119383070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_119383100_119385000
ENSMUSG00000030929.18_21	chr7	-	2958	4	ISM	ENSMUSG00000030929.18	ENSMUST00000033224.14	3487	9	6159	21	129	-4	3prime_fragment	FALSE	canonical	3	53	junction_1	9.0921211313239	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAGACATGTAGAACAT	NA	False	NA	-21	True	AATAAA	-15	NA	119387046	119383070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_119385768_119385961_119386051_119386626_119386709_119386956
ENSMUSG00000030929.18_6	chr7	-	3469	9	FSM	ENSMUSG00000030929.18	ENSMUST00000150844.3	3564	9	78	17	2	-4	multi-exon	FALSE	canonical	3	53	junction_1	8.7571399440685	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAGACATGTAGAACAT	NA	False	NA	-21	True	AATAAA	-15	NA	119393203	119383070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_119385768_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
ENSMUSG00000030929.18_9	chr7	-	3457	9	FSM	ENSMUSG00000030929.18	ENSMUST00000033224.14	3487	9	9	21	2	-4	multi-exon	FALSE	canonical	3	9	junction_7	22.8965062837106	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAGACATGTAGAACAT	NA	False	NA	-21	True	AATAAA	-15	NA	119393196	119383070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_119385768_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391567_119391653_119391722_119393140
ENSMUSG00000030930.15_0	chr7	-	4845	8	FSM	ENSMUSG00000030930.15	ENSMUST00000080215.6	4813	8	-35	3	-35	-3	multi-exon	FALSE	canonical	0	0	junction_3	1.67819144635296	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTGCTGGCCAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	131918992	131837511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_131840194_131843145_131843294_131849592_131849750_131864411_131864569_131868385_131868533_131870647_131870988_131871733_131872731_131918775
ENSMUSG00000030930.15_1	chr7	-	4095	7	ISM	ENSMUSG00000030930.15	ENSMUST00000077472.10	5041	8	46250	-1	8161	1	3prime_fragment	FALSE	canonical	0	0	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGGCCAGTTGTTTCCA	NA	False	NA	NA	False	NA	NA	NA	131872193	131837507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_131840194_131843145_131843294_131849592_131849750_131864411_131864569_131868385_131868533_131870647_131870988_131871733
ENSMUSG00000030934.10_0	chr7	-	2101	10	FSM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	49	2	49	-2	multi-exon	FALSE	canonical	3	402	junction_6	42.9636653837854	571	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAATGATGTGAATCTATT	NA	False	NA	-7	True	AATAAA	-22	NA	132178078	132159208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132163642_132164315_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
ENSMUSG00000030942.9_0	chr7	-	2661	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	25	3	-9	-3	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	1691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGGCATTCTTTTTT	NA	False	NA	-4	True	AATAAA	-17	NA	119319996	119314318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
ENSMUSG00000030942.9_1	chr7	-	1611	1	ISM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	4092	3	4058	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGGCATTCTTTTTT	NA	False	NA	-4	True	AATAAA	-17	NA	119315929	119314318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_119314300_119315900
ENSMUSG00000030946.14_0	chr7	+	1595	7	FSM	ENSMUSG00000030946.14	ENSMUST00000033241.6	1612	7	14	3	-14	0	multi-exon	FALSE	canonical	3	290	junction_6	19.9979165581484	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTGACTCAGCCTTTC	NA	False	NA	9	True	AATAAA	-17	NA	132212381	132308146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132251986_132252079_132307320
ENSMUSG00000030946.14_12	chr7	+	1253	5	NIC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	131.685942681822	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTGACTCAGCCTTTC	NA	False	NA	9	True	AATAAA	-17	NA	132212381	132308146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_132212560_132243252_132243317_132244215_132244309_132251986_132252079_132307320
ENSMUSG00000030956.16_0	chr7	-	4489	2	ISM	ENSMUSG00000030956.16	ENSMUST00000106168.2	3630	4	16957	-1280	16957	-1	3prime_fragment	FALSE	canonical	3	108	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGCTGCCTGCGCATGG	4177	False	NA	-15	True	AATAAA	-16	NA	132361688	132313813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_132317732_132361117
ENSMUSG00000030956.16_1	chr7	-	5229	5	NIC	ENSMUSG00000030956.16	novel	5465	5	NA	NA	73	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_4	27.206387117734	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCGGCTGCCTGCGCA	NA	False	NA	-18	True	AATAAA	-13	NA	132415542	132313816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132415309
ENSMUSG00000030956.16_11	chr7	-	4456	4	NIC	ENSMUSG00000030956.16	novel	4341	4	NA	NA	67	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	49.9355139710763	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCGGCTGCCTGCGCA	NA	False	NA	-18	True	AATAAA	-13	NA	132415548	132313816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_132317732_132373306_132373359_132380864_132381115_132415309
ENSMUSG00000030956.16_3	chr7	-	5469	5	FSM	ENSMUSG00000030956.16	ENSMUST00000097999.9	5465	5	-10	6	-10	0	multi-exon	FALSE	canonical	3	27	junction_4	41.3430768085782	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCGGCTGCCTGCGCA	NA	False	NA	-18	True	AATAAA	-13	NA	132415267	132313816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132414794
ENSMUSG00000030956.16_4	chr7	-	5183	4	NIC	ENSMUSG00000030956.16	novel	5465	5	NA	NA	67	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	42.9754451854648	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCGGCTGCCTGCGCA	NA	False	NA	-18	True	AATAAA	-13	NA	132415548	132313816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_132317732_132361117_132361897_132380864_132381115_132415309
ENSMUSG00000030956.16_5	chr7	-	2787	1	ISM	ENSMUSG00000030956.16	ENSMUST00000097999.9	5465	5	98654	6	62042	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCGGCTGCCTGCGCA	6975	False	NA	-18	True	AATAAA	-13	NA	132316603	132313816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_132313800_132316600
ENSMUSG00000030956.16_6	chr7	-	5091	5	NIC	ENSMUSG00000030956.16	novel	5465	5	NA	NA	29	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	38.4537059332387	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCGGCTGCCTGCGCA	NA	False	NA	-18	True	AATAAA	-13	NA	132415586	132313816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132415491
ENSMUSG00000030956.16_7	chr7	-	4488	4	NIC	ENSMUSG00000030956.16	novel	4341	4	NA	NA	192	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	54.8351063543137	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCGGCTGCCTGCGCA	NA	False	NA	-18	True	AATAAA	-13	NA	132415065	132313816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_132317732_132373306_132373359_132380864_132381115_132414794
ENSMUSG00000030956.16_8	chr7	-	4320	4	FSM	ENSMUSG00000030956.16	ENSMUST00000097998.9	4341	4	24	-3	24	-1	multi-exon	FALSE	canonical	3	17	junction_1	53.4852004452322	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGCTGCCTGCGCATGG	NA	False	NA	-15	True	AATAAA	-16	NA	132415591	132313813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_132317732_132373306_132373359_132380864_132381115_132415491
ENSMUSG00000030960.17_11	chr7	-	1056	6	FSM	ENSMUSG00000030960.17	ENSMUST00000033257.15	1107	6	45	6	11	-6	multi-exon	FALSE	canonical	3	236	junction_3	60.7651215747982	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAATCTGTTTTTGGTTT	NA	False	NA	NA	False	AGTAAA	-12	NA	132454357	132429191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_132429612_132433088_132433306_132438828_132438937_132452323_132452439_132453154_132453221_132454227
ENSMUSG00000030960.17_12	chr7	-	1062	6	NIC	ENSMUSG00000030960.17	novel	1107	6	NA	NA	8	-7	combination_of_known_junctions	FALSE	canonical	3	64	junction_3	113.265352160314	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGAATCTGTTTTTGGTT	NA	False	NA	NA	False	AGTAAA	-11	NA	132454360	132429192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_132429612_132433088_132433306_132438828_132438937_132452319_132452439_132453154_132453221_132454227
ENSMUSG00000030960.17_27	chr7	-	2056	3	FSM	ENSMUSG00000030960.17	ENSMUST00000154914.2	811	3	6	-1251	6	1251	multi-exon	FALSE	canonical	3	351	junction_1	20.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTAATTACTGGTACTG	NA	False	NA	NA	False	ATTAAA	-9	NA	132454362	132450583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_132452439_132453154_132453221_132454227
ENSMUSG00000030960.17_3	chr7	-	5816	10	Fusion	ENSMUSG00000030956.16_ENSMUSG00000030960.17	novel	1107	6	NA	NA	11	0	multi-exon	FALSE	canonical	3	29	junction_4	122.307243155894	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCGGCTGCCTGCGCA	NA	False	NA	-18	True	AATAAA	-13	NA	132454357	132313816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132429431_132429612_132433088_132433306_132438828_132438937_132452319_132452439_132453154_132453221_132454227
ENSMUSG00000030965.20_0	chr7	+	2871	9	FSM	ENSMUSG00000030965.20	ENSMUST00000084497.12	2892	9	17	4	-2	-1	multi-exon	FALSE	canonical	3	195	junction_8	19.6273883896967	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATACGATATTTTAGTGT	NA	False	NA	12	True	AATAAA	-14	NA	132460970	132486836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132482495_132482611_132484763
ENSMUSG00000030965.20_22	chr7	+	1790	1	ISM	ENSMUSG00000030965.20	ENSMUST00000084497.12	2892	9	24096	1	3946	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACGATATTTTAGTGTCTG	NA	False	NA	15	True	AATAAA	-17	NA	132485049	132486839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_132485000_132486800
ENSMUSG00000030965.20_3	chr7	+	3326	1	FSM	ENSMUSG00000030965.20	ENSMUST00000210077.2	1778	1	11	-1559	2	1559	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132460974	132464300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_132461000_132464300
ENSMUSG00000030965.20_5	chr7	+	2829	9	FSM	ENSMUSG00000030965.20	ENSMUST00000129552.2	2827	9	-2	0	-2	0	multi-exon	FALSE	canonical	3	30	junction_5	67.4532245337464	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATACGATATTTTAGTGTC	NA	False	NA	13	True	AATAAA	-15	NA	132460975	132486837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478364_132478447_132480257_132480343_132482495_132482611_132484763
ENSMUSG00000030966.14_0	chr7	-	2750	8	FSM	ENSMUSG00000030966.14	ENSMUST00000033264.12	2793	8	36	7	-4	-6	multi-exon	FALSE	canonical	3	11	junction_3	2.61861468283191	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCTGAGCTTCTTTCA	NA	False	NA	NA	False	AATAAA	-9	NA	102214657	102207134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_102208871_102209174_102209276_102209799_102209823_102210994_102211226_102212472_102212569_102212900_102213333_102213478_102213548_102214595
ENSMUSG00000030966.14_3	chr7	-	3801	7	ISM	ENSMUSG00000030966.14	ENSMUST00000033264.12	2793	8	36	4	-4	-3	intron_retention	FALSE	canonical	3	11	junction_3	2.7938424357067	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGAGCTTCTTTCATTC	NA	False	NA	NA	False	AATAAA	-12	NA	102214657	102207131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_102208871_102209174_102209276_102209799_102209823_102210994_102211226_102212472_102212569_102212900_102213333_102213478
ENSMUSG00000030967.16_0	chr7	+	2719	10	FSM	ENSMUSG00000030967.16	ENSMUST00000106157.8	5008	10	57	2232	57	163	multi-exon	FALSE	canonical	3	56	junction_1	22.7129157795708	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132532927	132585888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_132533275_132551313_132552165_132568235_132568424_132572914_132573069_132574418_132574491_132575153_132575353_132583009_132583131_132584099_132584230_132584411_132584642_132585461
ENSMUSG00000030967.16_1	chr7	+	2905	11	NNC	ENSMUSG00000030967.16	novel	5008	10	NA	NA	36	163	at_least_one_novel_splicesite	TRUE	canonical	3	20	junction_2	39.6359685134601	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132532906	132585888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_132533275_132549772_132549938_132551313_132552165_132568235_132568424_132572914_132573069_132574418_132574491_132575153_132575353_132583009_132583131_132584099_132584230_132584411_132584642_132585461
ENSMUSG00000030967.16_14	chr7	+	2042	9	FSM	ENSMUSG00000030967.16	ENSMUST00000033265.5	2210	9	331	-163	331	163	multi-exon	FALSE	canonical	3	94	junction_3	13.1142813375343	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132551643	132585888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_132552165_132568235_132568424_132572914_132573069_132574418_132574491_132575153_132575353_132583009_132583131_132584099_132584230_132584411_132584642_132585461
ENSMUSG00000030967.16_19	chr7	+	1619	1	ISM	ENSMUSG00000030967.16	ENSMUST00000106157.8	5008	10	53628	3	3911	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCATGGATTCAGATCTG	NA	False	NA	1	True	ATTAAA	-13	NA	132586498	132588117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_132586500_132588100
ENSMUSG00000030967.16_5	chr7	+	1852	9	NIC	ENSMUSG00000030967.16	novel	5008	10	NA	NA	73	163	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	38.7699545395658	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132532943	132585888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_132533275_132568235_132568424_132572914_132573069_132574418_132574491_132575153_132575353_132583009_132583131_132584099_132584230_132584411_132584642_132585461
ENSMUSG00000030970.17_0	chr7	-	3112	12	NIC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	-5	540	combination_of_known_junctions	FALSE	canonical	3	44	junction_11	251.022010164003	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAAATTTCTTTTAAGT	NA	False	NA	-30	True	AATAAA	-3	NA	132725590	132588751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724869_132725086_132725386
ENSMUSG00000030970.17_5	chr7	-	2645	10	FSM	ENSMUSG00000030970.17	ENSMUST00000166439.8	1997	10	-201	-447	0	426	multi-exon	FALSE	canonical	3	156	junction_8	235.790763073148	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAGAAAAATAATGGCTA	NA	False	NA	NA	False	AAGAAA	-22	NA	132725096	132588865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132683485_132683590_132724869
ENSMUSG00000030970.17_6	chr7	-	2808	11	FSM	ENSMUSG00000030970.17	ENSMUST00000033269.15	2321	11	1	-488	1	430	multi-exon	FALSE	canonical	3	550	junction_8	136.177861636905	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAATAATGGCTATCAG	NA	False	NA	NA	False	AAGAAA	-26	NA	132725095	132588861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724869
ENSMUSG00000030978.11_0	chr7	+	3024	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	125	848	-63	241	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	1773	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTGTGTGGTACTAAACT	NA	False	NA	NA	False	AATAAA	-11	NA	102091026	102118130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
ENSMUSG00000030979.14_10	chr7	-	2207	10	NIC	ENSMUSG00000030979.14	novel	1644	10	NA	NA	-391	-17	combination_of_known_junctions	FALSE	canonical	3	14	junction_9	18.4477908610847	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAATA	NA	False	NA	NA	False	GATAAA	-37	NA	133312192	133288110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133311457
ENSMUSG00000030979.14_12	chr7	-	1231	3	ISM	ENSMUSG00000030979.14	ENSMUST00000144789.2	598	6	7202	-605	7202	0	3prime_fragment	FALSE	canonical	3	56	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATCTGAGTATGGTAGC	NA	False	NA	NA	False	NA	NA	NA	133292607	133288084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_133288846_133291310_133291410_133292236
ENSMUSG00000030979.14_15	chr7	-	2841	8	NIC	ENSMUSG00000030979.14	novel	2189	9	NA	NA	-1	-17	intron_retention	FALSE	canonical	3	35	junction_7	14.8365241542483	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAATA	NA	False	NA	NA	False	GATAAA	-37	NA	133310787	133288110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_133288846_133291310_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
ENSMUSG00000030979.14_16	chr7	-	1711	7	NIC	ENSMUSG00000030979.14	novel	1045	7	NA	NA	-365	8	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	30.5705013952267	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTTGTACTTCAAACACA	NA	False	NA	NA	False	AATAAA	-22	NA	133312166	133293854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_133294386_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133311457
ENSMUSG00000030979.14_17	chr7	-	1054	7	FSM	ENSMUSG00000030979.14	ENSMUST00000106144.8	1045	7	-13	4	-3	-4	multi-exon	FALSE	canonical	1	3	junction_1	27.2299875545734	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATGTCACTGTTGCTTGT	NA	False	NA	NA	False	AATAAA	-10	NA	133310801	133293866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_133294386_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
ENSMUSG00000030979.14_2	chr7	-	1523	10	FSM	ENSMUSG00000030979.14	ENSMUST00000033276.11	1762	10	222	17	0	-17	multi-exon	FALSE	canonical	3	35	junction_9	13.5163367087644	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAATA	NA	False	NA	NA	False	GATAAA	-37	NA	133310788	133288110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
ENSMUSG00000030979.14_20	chr7	-	1615	10	FSM	ENSMUSG00000030979.14	ENSMUST00000106145.10	1644	10	11	18	-1	-9	multi-exon	FALSE	canonical	3	14	junction_9	18.4477908610847	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAATAAATAGGAC	NA	False	NA	NA	False	GATAAA	-45	NA	133310787	133288102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310652
ENSMUSG00000030979.14_3	chr7	-	2014	9	FSM	ENSMUSG00000030979.14	ENSMUST00000135760.8	2189	9	36	139	-1	-17	multi-exon	FALSE	canonical	3	35	junction_8	13.9821314541096	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAATA	NA	False	NA	NA	False	GATAAA	-37	NA	133310787	133288110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_133288846_133291310_133291410_133292236_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
ENSMUSG00000030980.18_0	chr7	-	5001	5	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	14	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.679175705304	204	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCACAAATATAGTCTTT	NA	False	NA	-22	True	AATAAA	-11	NA	118454893	118441449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_118445318_118447719_118447798_118449843_118449913_118451625_118452564_118454845
ENSMUSG00000030980.18_2	chr7	-	5048	5	FSM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	329	5	15	-5	multi-exon	FALSE	canonical	0	0	junction_3	263.543639650059	759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCACAAATATAGTCTTT	NA	False	NA	-22	True	AATAAA	-11	NA	118454892	118441449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
ENSMUSG00000030980.18_4	chr7	-	4702	4	ISM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	2957	5	2572	-5	3prime_fragment	FALSE	canonical	0	0	junction_3	289.540248593448	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCACAAATATAGTCTTT	NA	False	NA	-22	True	AATAAA	-11	NA	118452264	118441449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625
ENSMUSG00000030980.18_8	chr7	-	2737	1	ISM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	11040	0	10655	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATATAGTCTTTTGAAT	4018	False	NA	-17	True	AATAAA	-16	NA	118444181	118441444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_118441400_118444200
ENSMUSG00000030982.20_0	chr7	+	3100	31	FSM	ENSMUSG00000030982.20	ENSMUST00000059390.13	5097	31	517	1480	-4	-1	multi-exon	TRUE	canonical	3	302	junction_1	75.0223744403406	1029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAGCAGTGTCTCGGTGT	NA	False	NA	7	True	ATTAAA	-18	NA	118339965	118440709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
ENSMUSG00000030983.5_0	chr7	+	1228	7	FSM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	9	7	-6	-7	multi-exon	FALSE	canonical	3	1578	junction_1	47.9215214931895	981	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCATACTTGAAGTGTT	1316	False	NA	16	True	AATAAA	-17	NA	133311070	133322867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
ENSMUSG00000030986.14_0	chr7	-	2924	12	FSM	ENSMUSG00000030986.14	ENSMUST00000033290.12	2955	12	27	4	27	0	multi-exon	FALSE	canonical	3	247	junction_11	48.5725154403017	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCTCTTCAATGGGTTT	NA	False	NA	-13	True	AATAAA	-15	NA	133378505	133322674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133378330
ENSMUSG00000030986.14_2	chr7	-	2832	11	ISM	ENSMUSG00000030986.14	ENSMUST00000140593.9	2998	12	273	0	-167	0	3prime_fragment	FALSE	canonical	3	326	junction_7	30.1875802276367	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCTCTTCAATGGGTTT	NA	False	NA	-13	True	AATAAA	-15	NA	133361725	133322674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128
ENSMUSG00000030986.14_4	chr7	-	2870	12	NIC	ENSMUSG00000030986.14	novel	2955	12	NA	NA	36	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_10	105.850978984921	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCTCTTCAATGGGTTT	NA	False	NA	-13	True	AATAAA	-15	NA	133378496	133322674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350721_133361128_133361643_133378330
ENSMUSG00000030986.14_5	chr7	-	2868	12	FSM	ENSMUSG00000030986.14	ENSMUST00000140593.9	2998	12	130	0	130	0	multi-exon	FALSE	canonical	3	66	junction_11	95.5958261822716	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCTCTTCAATGGGTTT	NA	False	NA	-13	True	AATAAA	-15	NA	133361868	133322674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133361749
ENSMUSG00000030987.6_18	chr7	+	4065	12	FSM	ENSMUSG00000030987.6	ENSMUST00000033289.6	4085	12	14	6	1	-6	multi-exon	TRUE	canonical	2	5	junction_10	17.5852116683732	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCTGCTGGCTGTGACT	NA	False	NA	17	True	AATAAA	-17	NA	101917026	102086519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101917761_102003707_102003839_102035293_102035409_102057573_102057686_102060455_102060572_102064544_102064723_102070559_102070738_102075179_102075348_102075906_102076008_102076288_102076525_102080091_102080159_102084590
ENSMUSG00000030987.6_23	chr7	+	3058	9	NIC	ENSMUSG00000030987.6	novel	4085	12	NA	NA	-14716	-6	combination_of_known_junctions	FALSE	canonical	3	47	junction_7	7.08431365765238	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCTGCTGGCTGTGACT	NA	False	NA	17	True	AATAAA	-17	NA	102060463	102086519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_102060572_102064544_102064723_102070559_102070738_102075179_102075348_102075906_102076008_102076288_102076525_102077980_102078074_102080091_102080159_102084590
ENSMUSG00000030987.6_33	chr7	+	1511	1	ISM	ENSMUSG00000030987.6	ENSMUST00000033289.6	4085	12	167996	6	5051	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCTGCTGGCTGTGACT	9299	False	NA	17	True	AATAAA	-17	NA	102085008	102086519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_102085000_102086500
ENSMUSG00000030987.6_4	chr7	+	4165	13	NIC	ENSMUSG00000030987.6	novel	2183	13	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	47	junction_11	7.93856620135735	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCTGCTGGCTGTGACT	NA	False	NA	17	True	AATAAA	-17	NA	101917019	102086519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101917761_102003707_102003839_102035293_102035409_102057573_102057686_102060455_102060572_102064544_102064723_102070559_102070738_102075179_102075348_102075906_102076008_102076288_102076525_102077980_102078074_102080091_102080159_102084590
ENSMUSG00000030987.6_5	chr7	+	3497	13	NNC	ENSMUSG00000030987.6	novel	619	5	NA	NA	-515	-6	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	14.8847423745107	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCTGCTGGCTGTGACT	NA	False	NA	17	True	AATAAA	-17	NA	101916497	102086519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_101916571_102003707_102003839_102035293_102035409_102057573_102057686_102060455_102060572_102064544_102064723_102070559_102070738_102075179_102075348_102075906_102076008_102076288_102076525_102077980_102078074_102080091_102080159_102084590
ENSMUSG00000030990.19_1	chr7	+	2088	8	NIC	ENSMUSG00000030990.19	novel	2141	7	NA	NA	68	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	70.2444710584806	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTGAGGTAGGTATG	NA	False	NA	9	True	AATAAA	-16	NA	101859646	101887767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101859799_101871988_101872009_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
ENSMUSG00000030990.19_13	chr7	+	2011	7	FSM	ENSMUSG00000030990.19	ENSMUST00000033292.14	1201	7	-13	-797	3	0	multi-exon	FALSE	canonical	3	107	junction_5	27.0657635317306	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTGAGGTAGGTATG	622	False	NA	9	True	AATAAA	-16	NA	101872262	101887767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
ENSMUSG00000030990.19_14	chr7	+	1898	6	NIC	ENSMUSG00000030990.19	novel	1201	7	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	55.9692772867401	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTGAGGTAGGTATG	623	False	NA	9	True	AATAAA	-16	NA	101872263	101887767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101872358_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
ENSMUSG00000030990.19_15	chr7	+	1999	7	FSM	ENSMUSG00000030990.19	ENSMUST00000156529.8	2034	7	28	7	3	0	multi-exon	FALSE	canonical	3	53	junction_5	43.1689188601655	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTGAGGTAGGTATG	622	False	NA	9	True	AATAAA	-16	NA	101872262	101887767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
ENSMUSG00000030990.19_3	chr7	+	2146	7	NIC	ENSMUSG00000030990.19	novel	2141	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	59.4065559419909	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTGAGGTAGGTATG	NA	False	NA	9	True	AATAAA	-16	NA	101859568	101887767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101859799_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
ENSMUSG00000030990.19_37	chr7	+	1075	1	ISM	ENSMUSG00000030990.19	ENSMUST00000120879.8	2141	7	27122	9	1581	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACAGTCTGAGGTAGGTA	1844	False	NA	7	True	AATAAA	-14	NA	101886690	101887765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101886700_101887800
ENSMUSG00000030990.19_5	chr7	+	2042	7	FSM	ENSMUSG00000030990.19	ENSMUST00000120879.8	2141	7	92	7	-70	0	multi-exon	FALSE	canonical	3	7	junction_1	65.7809918509054	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTGAGGTAGGTATG	NA	False	NA	9	True	AATAAA	-16	NA	101859660	101887767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101859799_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
ENSMUSG00000031004.9_0	chr7	-	3935	3	ISM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	18960	2	13510	-2	3prime_fragment	FALSE	canonical	3	286	junction_2	30	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTTTGGCCTCTCTGAC	NA	False	NA	-20	True	AATAAA	-17	NA	135299130	135291514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_135291863_135294808_135295226_135295960
ENSMUSG00000031004.9_1	chr7	-	10159	14	FSM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	-100	2	-100	-2	multi-exon	FALSE	canonical	3	124	junction_9	63.2390037685062	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTTTGGCCTCTCTGAC	NA	False	NA	-20	True	AATAAA	-17	NA	135318190	135291514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_135291863_135294808_135295226_135295960_135302797_135303630_135303787_135305796_135305969_135306067_135306187_135306271_135306525_135307338_135307515_135309089_135310050_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
ENSMUSG00000031004.9_3	chr7	-	9183	13	NIC	ENSMUSG00000031004.9	novel	10061	14	NA	NA	-83	-1	combination_of_known_splicesites	FALSE	canonical	3	19	junction_8	77.8015191939649	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTGGCCTCTCTGACA	NA	False	NA	-19	True	AATAAA	-18	NA	135318173	135291513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_135291863_135294808_135295226_135295960_135302797_135303630_135303787_135305796_135305969_135306067_135306187_135306271_135306525_135307338_135307515_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
ENSMUSG00000031004.9_5	chr7	-	569	2	ISM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	23062	1	17612	-1	3prime_fragment	FALSE	canonical	3	346	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTGGCCTCTCTGACA	NA	False	NA	-19	True	AATAAA	-18	NA	135295028	135291513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_135291863_135294808
ENSMUSG00000031007.3_1	chrX	+	2014	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	1	309	1	-309	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	1236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTGTGTCACTGCAAT	NA	False	NA	28	True	AATAAA	-12	NA	12454040	12482979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
ENSMUSG00000031010.18_197	chrX	+	4824	17	ISM	ENSMUSG00000031010.18	ENSMUST00000089302.11	11887	45	70244	2401	12431	1029	3prime_fragment	FALSE	canonical	3	819	junction_1	120.104105232711	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGAACTTTTTGTCCTG	NA	False	NA	NA	False	AATAGA	-10	NA	13007996	13037166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ENSMUSG00000031010.18_203	chrX	+	4395	15	ISM	ENSMUSG00000031010.18	ENSMUST00000089302.11	11887	45	73723	2401	-15620	1029	3prime_fragment	FALSE	canonical	3	952	junction_4	87.8641402556079	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGAACTTTTTGTCCTG	NA	False	NA	NA	False	AATAGA	-10	NA	13011475	13037166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ENSMUSG00000031010.18_208	chrX	+	4262	14	ISM	ENSMUSG00000031010.18	ENSMUST00000089302.11	11887	45	76453	2401	-12890	1029	3prime_fragment	FALSE	canonical	3	952	junction_3	85.6664786373887	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGAACTTTTTGTCCTG	NA	False	NA	NA	False	AATAGA	-10	NA	13014205	13037166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ENSMUSG00000031010.18_210	chrX	+	4028	13	ISM	ENSMUSG00000031010.18	ENSMUST00000089302.11	11887	45	79821	2401	-9522	1029	3prime_fragment	FALSE	canonical	3	952	junction_2	83.9660976558727	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGAACTTTTTGTCCTG	NA	False	NA	NA	False	AATAGA	-10	NA	13017573	13037166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ENSMUSG00000031010.18_212	chrX	+	3420	11	ISM	ENSMUSG00000031010.18	ENSMUST00000089302.11	11887	45	84840	2398	-4503	1032	3prime_fragment	FALSE	canonical	3	1026	junction_7	67.7468818470636	166	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAACTTTTTGTCCTGTGG	NA	False	NA	NA	False	AATAGA	-13	NA	13022592	13037169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ENSMUSG00000031010.18_23	chrX	+	9606	46	NIC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	2	1025	combination_of_known_junctions	FALSE	canonical	3	383	junction_14	188.080668272361	182	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAGAAGAACTTTTTGT	825	False	NA	NA	False	AATAGA	-6	NA	12937754	13037162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_12937973_12938453_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982847_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ENSMUSG00000031010.18_239	chrX	+	3124	1	ISM	ENSMUSG00000031010.18	ENSMUST00000089302.11	11887	45	98681	10	9338	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTAAATTTGGGTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	13036433	13039557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_13036400_13039600
ENSMUSG00000031010.18_25	chrX	+	10088	45	NIC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	5	1029	intron_retention	FALSE	canonical	3	383	junction_13	181.435749789431	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGAACTTTTTGTCCTG	828	False	NA	NA	False	AATAGA	-10	NA	12937757	13037166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982847_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ENSMUSG00000031010.18_26	chrX	+	9595	46	NIC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	2	1029	combination_of_known_junctions	FALSE	canonical	3	336	junction_14	190.839489145418	194	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGAACTTTTTGTCCTG	825	False	NA	NA	False	AATAGA	-10	NA	12937754	13037166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_12937973_12938453_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ENSMUSG00000031010.18_38	chrX	+	10070	45	NIC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	2	1023	intron_retention	TRUE	canonical	3	336	junction_13	184.407752028662	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTTAAGAAGAACTTTTT	825	False	NA	NA	False	AATAGA	-4	NA	12937754	13037160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
ENSMUSG00000031012.18_0	chrX	-	4405	1	ISM	ENSMUSG00000031012.18	ENSMUST00000156096.8	7707	24	264534	12	5272	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATGAAAAGGCACGTG	NA	False	NA	NA	False	AATAAA	-7	NA	13387735	13383330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_13383300_13387700
ENSMUSG00000031012.18_1	chrX	-	4467	25	FSM	ENSMUSG00000031012.18	ENSMUST00000033321.11	4057	25	-77	-333	-55	333	multi-exon	FALSE	canonical	3	68	junction_7	23.235172990294	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAATTAAATGCCTTTGG	NA	False	NA	NA	False	AATATA	-17	NA	13712872	13387236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13418611_13418681_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175_13652289_13712246
ENSMUSG00000031012.18_2	chrX	-	4194	26	FSM	ENSMUSG00000031012.18	ENSMUST00000115438.10	8366	26	-57	4229	-57	22	multi-exon	FALSE	canonical	3	85	junction_8	22.9097708412808	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGTCTCAATTTAATT	NA	False	NA	-1	True	NA	NA	NA	13712874	13387547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13417185_13417222_13418611_13418681_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175_13652289_13712246
ENSMUSG00000031012.18_9	chrX	-	4421	25	FSM	ENSMUSG00000031012.18	ENSMUST00000115436.9	8260	25	-78	3917	-41	334	multi-exon	FALSE	canonical	2	3	junction_8	34.3371508799952	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATTAAATGCCTTTGGG	NA	False	NA	NA	False	AATATA	-18	NA	13712858	13387235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13417185_13417222_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175_13652289_13712246
ENSMUSG00000031015.9_41	chr7	+	1553	1	ISM	ENSMUSG00000031015.9	ENSMUST00000033325.9	4027	12	60174	69	60130	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGGTTTCTATTTTTT	NA	False	NA	8	True	ATTAAA	-15	NA	109881091	109882644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_109881100_109882600
ENSMUSG00000031015.9_5	chr7	+	3934	12	FSM	ENSMUSG00000031015.9	ENSMUST00000033325.9	4027	12	22	71	1	-71	multi-exon	FALSE	canonical	3	251	junction_6	36.1790771003727	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTTTGGTTTCTATTTT	NA	False	NA	6	True	ATTAAA	-13	NA	109820939	109882642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086_109863315_109865042_109865190_109866988_109867098_109869106_109869289_109872466_109872575_109873841_109874009_109878386_109878586_109879773_109879871_109880437
ENSMUSG00000031016.10_1	chr7	+	3386	11	FSM	ENSMUSG00000031016.10	ENSMUST00000033326.10	3419	11	29	4	29	-4	multi-exon	TRUE	canonical	3	352	junction_6	26.6084573021436	820	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTGTCTAAATCTTCAC	NA	False	NA	22	True	ATTAAA	-19	NA	109721281	109742489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_109722133_109723662_109723869_109725013_109725075_109725202_109725376_109725907_109726030_109730035_109730183_109733961_109734058_109734844_109734931_109738355_109738527_109738768_109738915_109741162
ENSMUSG00000031021.14_0	chr7	-	1660	5	FSM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	32	11	-1	-9	multi-exon	FALSE	canonical	3	85	junction_4	15.7698287879102	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACCCAATCAATGTTT	NA	False	NA	-9	True	AATAAA	-8	NA	109351454	109335051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351277
ENSMUSG00000031021.14_1	chr7	-	967	5	NIC	ENSMUSG00000031021.14	novel	1703	5	NA	NA	-15	-736	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	49.8315913853852	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGAAGCCCCGTGCCTG	NA	False	NA	NA	False	AATAAA	-20	NA	109351468	109335778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349332_109351277
ENSMUSG00000031023.6_0	chr7	+	958	6	FSM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	58	12	-4	-12	multi-exon	FALSE	canonical	3	170	junction_1	91.1249691357972	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAAAAAGAATTCATTTT	NA	False	NA	NA	False	AATAAA	-13	NA	109302954	109311384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_109302984_109303152_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031023.6_12	chr7	+	148	1	ISM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	8124	228	2981	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATAATGATGCATCAATC	NA	False	NA	NA	False	AATAAA	-18	NA	109311020	109311168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_109311000_109311200
ENSMUSG00000031023.6_3	chr7	+	1641	4	NIC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	48	-5	intron_retention	FALSE	canonical	3	381	junction_2	16.3095064303001	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATGATGCATCAATCTT	NA	False	NA	NA	False	AATAAA	-20	NA	109303006	109311170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031023.6_6	chr7	+	1021	5	ISM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	164	12	102	-12	3prime_fragment	FALSE	canonical	3	347	junction_1	28.0624304008046	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAAAAAGAATTCATTTT	NA	False	NA	NA	False	AATAAA	-13	NA	109303060	109311384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031024.14_0	chr7	-	4427	20	FSM	ENSMUSG00000031024.14	ENSMUST00000077909.9	4612	20	185	0	-15	0	multi-exon	FALSE	canonical	3	89	junction_19	35.017605386157	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAGAGTCTTATTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	109215775	109123126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109215504
ENSMUSG00000031024.14_1	chr7	-	4303	21	NIC	ENSMUSG00000031024.14	novel	4255	20	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_20	42.4156810625504	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAGAGTCTTATTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	109302801	109123126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109216264_109216355_109302744
ENSMUSG00000031024.14_9	chr7	-	3612	18	ISM	ENSMUSG00000031024.14	ENSMUST00000077909.9	4612	20	59731	0	-16589	0	3prime_fragment	TRUE	canonical	3	171	junction_15	24.3838962117146	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAGAGTCTTATTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	109156229	109123126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417
ENSMUSG00000031026.16_0	chr7	-	3482	1	ISM	ENSMUSG00000031026.16	ENSMUST00000106739.8	9250	20	41251	0	22647	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAACCGTGTCCTAGAGTG	NA	False	NA	-3	True	AATAAA	-21	NA	109051694	109048212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_109048200_109051700
ENSMUSG00000031027.16_1	chr7	-	2166	13	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51257	2	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	19.7188573029304	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTCCCTCACGTGTCC	NA	False	NA	-12	True	AATAAA	-28	NA	108986767	108878427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108939575_108939687_108940495_108940847_108986659
ENSMUSG00000031027.16_10	chr7	-	2059	12	ISM	ENSMUSG00000031027.16	ENSMUST00000121748.8	2295	13	97177	-2	97177	2	3prime_fragment	FALSE	canonical	2	7	junction_11	18.3009731936504	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTCCCTCACGTGTCC	NA	False	NA	-12	True	AATAAA	-28	NA	108940847	108878427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108939575_108939687_108940495
ENSMUSG00000031027.16_13	chr7	-	1103	6	ISM	ENSMUSG00000031027.16	ENSMUST00000121748.8	2295	13	111182	0	111182	0	3prime_fragment	FALSE	canonical	3	45	junction_3	9.19565114605812	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	3333	False	NA	-14	True	AATAAA	-26	NA	108926842	108878429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798
ENSMUSG00000031027.16_2	chr7	-	3909	8	ISM	ENSMUSG00000031027.16	ENSMUST00000121748.8	2295	13	104686	-10	104686	10	3prime_fragment	FALSE	canonical	3	45	junction_3	8.39582014566578	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCACGTGTCCTTGTGATT	NA	False	NA	-4	True	AATAAA	-36	NA	108933338	108878419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675
ENSMUSG00000031027.16_5	chr7	-	1707	11	NNC	ENSMUSG00000031027.16	novel	1304	11	NA	NA	51254	2	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_10	9.45568612000208	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTCCCTCACGTGTCC	NA	False	NA	-12	True	AATAAA	-28	NA	108986770	108878427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108986659
ENSMUSG00000031028.15_1	chr7	+	5816	12	NIC	ENSMUSG00000031028.15	novel	772	4	NA	NA	-21	-3	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	6.12676016199791	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACGGCTGTGTCCTTGGTT	NA	False	NA	12	True	ATTAAA	-12	NA	108549842	108633664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_108549979_108619723_108619776_108620073_108620237_108621816_108621961_108623696_108623865_108624814_108624934_108625796_108625995_108626209_108626323_108626959_108627078_108628468_108628568_108628760_108628933_108629330
ENSMUSG00000031028.15_10	chr7	+	5452	10	ISM	ENSMUSG00000031028.15	ENSMUST00000119474.2	2097	13	3367	-3841	3367	-137	3prime_fragment	FALSE	canonical	3	14	junction_9	3.69517536629242	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGCAAATGTATTTATTT	7839	False	NA	0	True	AATAAA	-14	NA	108620115	108633530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_108620237_108621816_108621961_108623696_108623865_108624814_108624934_108625796_108625995_108626209_108626323_108626959_108627078_108628468_108628568_108628760_108628933_108629330
ENSMUSG00000031028.15_14	chr7	+	4582	3	ISM	ENSMUSG00000031028.15	ENSMUST00000119474.2	2097	13	11745	-3977	2064	-1	3prime_fragment	FALSE	canonical	3	14	junction_2	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCTGTGTCCTTGGTTTT	NA	False	NA	14	True	ATTAAA	-14	NA	108628493	108633666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_108628568_108628760_108628933_108629330
ENSMUSG00000031028.15_15	chr7	+	2859	1	ISM	ENSMUSG00000031028.15	ENSMUST00000033341.12	5997	12	20774	3	4376	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACGGCTGTGTCCTTGGTT	NA	False	NA	12	True	ATTAAA	-12	NA	108630805	108633664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_108630800_108633700
ENSMUSG00000031028.15_22	chr7	+	6932	10	NIC	ENSMUSG00000031028.15	novel	5997	12	NA	NA	-35	-135	intron_retention	FALSE	canonical	3	8	junction_1	5.53774924194538	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAAATGTATTTATTTAT	NA	False	NA	2	True	AATAAA	-16	NA	108609996	108633532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_108610346_108619723_108619776_108620073_108620237_108621816_108621961_108623696_108623865_108624814_108624934_108625796_108625995_108626209_108627078_108628468_108628568_108628760
ENSMUSG00000031028.15_5	chr7	+	5989	12	FSM	ENSMUSG00000031028.15	ENSMUST00000033341.12	5997	12	6	2	6	-2	multi-exon	FALSE	canonical	3	8	junction_1	5.29306422836714	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGGCTGTGTCCTTGGTTT	NA	False	NA	13	True	ATTAAA	-13	NA	108610037	108633665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_108610346_108619723_108619776_108620073_108620237_108621816_108621961_108623696_108623865_108624814_108624934_108625796_108625995_108626209_108626323_108626959_108627078_108628468_108628568_108628760_108628933_108629330
ENSMUSG00000031028.15_6	chr7	+	6272	11	ISM	ENSMUSG00000031028.15	ENSMUST00000033341.12	5997	12	-13	136	-13	-136	intron_retention	FALSE	canonical	3	8	junction_1	5.2687759489278	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCAAATGTATTTATTTA	NA	False	NA	1	True	AATAAA	-15	NA	108610018	108633531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_108610346_108619723_108619776_108620073_108620237_108621816_108621961_108623696_108623865_108624814_108624934_108625796_108625995_108626209_108626323_108626959_108627078_108628468_108628568_108628760
ENSMUSG00000031028.15_8	chr7	+	5662	12	NNC	ENSMUSG00000031028.15	novel	747	2	NA	NA	2773	-137	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	5.49078868019691	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGCAAATGTATTTATTT	7245	False	NA	0	True	AATAAA	-14	NA	108619521	108633530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_108619638_108619723_108619776_108620073_108620237_108621816_108621961_108623696_108623865_108624814_108624934_108625796_108625995_108626209_108626323_108626959_108627078_108628468_108628568_108628760_108628933_108629330
ENSMUSG00000031029.7_1	chr7	+	1247	8	FSM	ENSMUSG00000031029.7	ENSMUST00000033342.7	2514	8	0	1267	0	676	multi-exon	FALSE	canonical	3	2245	junction_2	107.423632105296	1449	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAACTTTATCTGATGC	NA	False	NA	NA	False	AATAAA	-18	NA	108533623	108540891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_108534015_108536952_108537024_108537242_108537323_108537615_108537754_108539396_108539489_108539850_108539988_108540100_108540215_108540667
ENSMUSG00000031059.10_0	chrX	-	562	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	345	1	345	-1	multi-exon	FALSE	canonical	3	2198	junction_1	70	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTGGTTACTGCTGCTT	NA	False	NA	-5	True	ATTAAA	-13	NA	20483513	20481565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_20481782_20481952_20482084_20483298
ENSMUSG00000031060.17_0	chrX	+	3154	23	FSM	ENSMUSG00000031060.17	ENSMUST00000084383.10	3172	23	4	14	2	-1	multi-exon	TRUE	canonical	3	151	junction_9	72.7799809002085	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTCCATTTCTACTTTC	559	False	NA	27	True	AATAAA	-15	NA	20484025	20517126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ENSMUSG00000031060.17_5	chrX	+	3147	23	NIC	ENSMUSG00000031060.17	novel	3172	23	NA	NA	6	-1	combination_of_known_junctions	FALSE	canonical	3	194	junction_9	67.1727297333874	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTCCATTTCTACTTTC	563	False	NA	27	True	AATAAA	-15	NA	20484029	20517126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ENSMUSG00000031060.17_6	chrX	+	3359	24	NIC	ENSMUSG00000031060.17	novel	3698	24	NA	NA	25	-1	combination_of_known_junctions	FALSE	canonical	3	108	junction_4	89.4718170663217	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTCCATTTCTACTTTC	582	False	NA	27	True	AATAAA	-15	NA	20484048	20517126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ENSMUSG00000031060.17_8	chrX	+	3385	24	FSM	ENSMUSG00000031060.17	ENSMUST00000115374.8	3564	24	165	14	2	-1	multi-exon	FALSE	canonical	3	108	junction_4	93.2983708932913	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTCCATTTCTACTTTC	559	False	NA	27	True	AATAAA	-15	NA	20484025	20517126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ENSMUSG00000031065.15_2	chrX	+	3096	16	FSM	ENSMUSG00000031065.15	ENSMUST00000033380.7	3120	16	19	5	19	-5	multi-exon	FALSE	canonical	3	1538	junction_15	84.886172149663	2643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTCTGGTTATAAATC	2343	False	NA	13	True	ATTAAA	-15	NA	20554675	20566114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20555046_20559562_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
ENSMUSG00000031065.15_3	chrX	+	3554	14	NIC	ENSMUSG00000031065.15	novel	3120	16	NA	NA	22	-5	intron_retention	FALSE	canonical	3	1538	junction_13	90.6073523931271	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTCTGGTTATAAATC	2346	False	NA	13	True	ATTAAA	-15	NA	20554678	20566114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_20555046_20559562_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
ENSMUSG00000031066.11_0	chrX	+	3429	21	FSM	ENSMUSG00000031066.11	ENSMUST00000033383.3	3467	21	30	8	2	-6	multi-exon	FALSE	canonical	3	183	junction_13	34.5694590643244	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCACACCTAGCTGTTT	NA	False	NA	-5	True	NA	NA	NA	20570174	20586770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
ENSMUSG00000031066.11_12	chrX	+	3488	22	NIC	ENSMUSG00000031066.11	novel	3467	21	NA	NA	-12	-6	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	70.5175554282958	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCACACCTAGCTGTTT	NA	False	NA	-5	True	NA	NA	NA	20570186	20586770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_20570359_20573150_20573222_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
ENSMUSG00000031068.9_0	chr7	+	1227	11	FSM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	45	413	3	-413	multi-exon	FALSE	canonical	3	3305	junction_4	243.181434324251	1851	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGATTGCGTGTAGA	NA	False	NA	28	True	AATAAA	-16	NA	137039387	137069910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031072.15_0	chr7	+	1977	5	FSM	ENSMUSG00000031072.15	ENSMUST00000033388.12	2015	5	32	6	-4	-6	multi-exon	FALSE	canonical	3	87	junction_3	3.69966214673719	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGTAGTCTGTCTGGG	NA	False	NA	2	True	AATAAA	-12	NA	144468903	144474865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144473346
ENSMUSG00000031072.15_2	chr7	+	2253	4	ISM	ENSMUSG00000031072.15	ENSMUST00000033388.12	2015	5	24	6	-12	-6	intron_retention	FALSE	canonical	3	87	junction_3	4.10960933531265	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGTAGTCTGTCTGGG	NA	False	NA	2	True	AATAAA	-12	NA	144468895	144474865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960
ENSMUSG00000031072.15_4	chr7	+	1077	1	FSM	ENSMUSG00000031072.15	ENSMUST00000207094.2	4022	1	1829	1116	1829	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTAGTCTGTCTGG	NA	False	NA	1	True	AATAAA	-11	NA	144473787	144474864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_144473800_144474900
ENSMUSG00000031072.15_6	chr7	+	2748	5	FSM	ENSMUSG00000031072.15	ENSMUST00000105895.2	1016	5	-7	-1725	0	472	multi-exon	FALSE	canonical	2	4	junction_4	38.4146781842566	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATGGCCCTAAACCTTC	NA	False	NA	NA	False	AATGAA	-14	NA	144468909	144484957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144482661
ENSMUSG00000031073.7_0	chr7	+	1868	3	FSM	ENSMUSG00000031073.7	ENSMUST00000033389.7	1810	3	-65	7	-65	-7	multi-exon	FALSE	canonical	2	3	junction_2	1.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAAAGTTATTTGTTCTA	NA	False	NA	NA	False	ATTAAA	-16	NA	144450202	144454683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_144450669_144450852_144450957_144453385
ENSMUSG00000031074.15_0	chr7	+	1434	4	FSM	ENSMUSG00000031074.15	ENSMUST00000155320.8	599	4	-210	-625	-210	625	multi-exon	FALSE	canonical	3	7	junction_1	23.9768406778059	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCTGGGATACAGACTT	NA	False	NA	9	True	ATTAAA	-24	NA	144391609	144397081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_144391847_144392341_144392665_144394407_144394512_144396311
ENSMUSG00000031074.15_2	chr7	+	2631	3	FSM	ENSMUSG00000031074.15	ENSMUST00000105898.2	2299	3	-332	0	180	0	multi-exon	FALSE	canonical	3	54	junction_2	3.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACCATATGGTTGGTG	NA	False	NA	3	True	NA	NA	NA	144391999	144398173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_144392665_144394407_144394512_144396311
ENSMUSG00000031074.15_7	chr7	+	1691	1	ISM	ENSMUSG00000031074.15	ENSMUST00000105898.2	2299	3	4151	0	4151	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACCATATGGTTGGTG	NA	False	NA	3	True	NA	NA	NA	144396482	144398173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_144396500_144398200
ENSMUSG00000031075.20_0	chr7	-	4464	25	ISM	ENSMUSG00000031075.20	ENSMUST00000121758.8	4552	26	59669	2	11	-2	3prime_fragment	FALSE	canonical	0	0	junction_12	7.1820329449413	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCTGGTCTCTCCTGGCT	NA	False	NA	NA	False	AATAAA	-12	NA	144232611	144142287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_144144003_144146437_144146544_144149178_144149364_144150917_144150971_144157177_144157331_144161654_144161801_144162586_144162688_144164579_144164638_144165071_144165184_144165350_144165553_144168586_144168662_144172585_144172658_144173211_144173224_144175404_144175488_144187332_144187494_144190811_144190947_144192236_144192302_144198444_144198487_144201760_144201817_144204239_144204292_144207940_144207996_144209335_144209488_144210751_144210851_144223079_144223413_144232370
ENSMUSG00000031075.20_1	chr7	-	795	1	ISM	ENSMUSG00000031075.20	ENSMUST00000121758.8	4552	26	149198	2	18950	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCTGGTCTCTCCTGGCT	NA	False	NA	NA	False	AATAAA	-12	NA	144143082	144142287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_144142300_144143100
ENSMUSG00000031075.20_11	chr7	-	4523	26	NIC	ENSMUSG00000031075.20	novel	4552	26	NA	NA	14	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	8.0544149384049	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAACCCTGGTCTCTCCT	NA	False	NA	NA	False	AATAAA	-8	NA	144232608	144142291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_144144003_144146437_144146544_144149178_144149364_144150917_144150971_144157177_144157331_144161654_144161801_144162586_144162688_144164579_144164638_144165071_144165184_144165350_144165553_144168586_144168662_144172585_144172658_144173211_144173224_144175404_144175488_144187332_144187494_144190811_144190947_144192236_144192302_144198444_144198487_144201760_144201817_144202311_144202378_144204239_144204292_144207940_144207996_144209335_144209488_144210751_144210851_144223079_144223413_144232370
ENSMUSG00000031075.20_15	chr7	-	2284	6	ISM	ENSMUSG00000031075.20	ENSMUST00000121758.8	4552	26	130554	2	306	-2	3prime_fragment	TRUE	canonical	3	14	junction_1	4.06939798987516	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCTGGTCTCTCCTGGCT	NA	False	NA	NA	False	AATAAA	-12	NA	144161726	144142287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_144144003_144146437_144146544_144149178_144149364_144150917_144150971_144157177_144157331_144161654
ENSMUSG00000031075.20_18	chr7	-	3260	16	ISM	ENSMUSG00000031075.20	ENSMUST00000121758.8	4552	26	101439	6	57	-2	3prime_fragment	FALSE	canonical	0	0	junction_12	7.95989949685296	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAACCCTGGTCTCTCCT	NA	False	NA	NA	False	AATAAA	-8	NA	144190841	144142291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_144144003_144146437_144146544_144149178_144149364_144150917_144150971_144157177_144157331_144161654_144161801_144162586_144162688_144164579_144164638_144165071_144165184_144165350_144165553_144168586_144168662_144172585_144172658_144173211_144173224_144175404_144175488_144187332_144187494_144190811
ENSMUSG00000031075.20_2	chr7	-	4595	26	NIC	ENSMUSG00000031075.20	novel	4552	26	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	7.88984157001901	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACACAACCCTGGTCTCT	NA	False	NA	NA	False	AATAAA	-5	NA	144292329	144142294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_144144003_144146437_144146544_144149178_144149364_144150917_144150971_144157177_144157331_144161654_144161801_144162586_144162688_144164579_144164638_144165071_144165184_144165350_144165553_144168586_144168662_144172585_144172658_144173211_144173224_144175404_144175488_144187332_144187494_144190811_144190947_144192236_144192302_144198444_144198487_144201760_144201817_144204239_144204292_144207940_144207996_144209335_144209488_144210751_144210851_144223079_144223413_144232370_144232517_144292096
ENSMUSG00000031075.20_3	chr7	-	4594	26	FSM	ENSMUSG00000031075.20	ENSMUST00000121758.8	4552	26	-48	6	1	-2	multi-exon	FALSE	canonical	0	0	junction_12	7.88984157001901	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAACCCTGGTCTCTCCT	NA	False	NA	NA	False	AATAAA	-8	NA	144292328	144142291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_144144003_144146437_144146544_144149178_144149364_144150917_144150971_144157177_144157331_144161654_144161801_144162586_144162688_144164579_144164638_144165071_144165184_144165350_144165553_144168586_144168662_144172585_144172658_144173211_144173224_144175404_144175488_144187332_144187494_144190811_144190947_144192236_144192302_144198444_144198487_144201760_144201817_144204239_144204292_144207940_144207996_144209335_144209488_144210751_144210851_144223079_144223413_144232370_144232517_144292099
ENSMUSG00000031075.20_7	chr7	-	4433	24	ISM	ENSMUSG00000031075.20	ENSMUST00000118556.9	4566	25	59709	4	28	0	3prime_fragment	FALSE	canonical	0	0	junction_12	6.22756844166744	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACCCTGGTCTCTCCTGG	NA	False	NA	NA	False	AATAAA	-10	NA	144232594	144142289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_144144003_144146437_144146544_144149178_144149364_144150917_144150971_144157177_144157331_144161654_144161801_144162586_144162688_144164579_144164638_144165071_144165184_144165350_144165553_144168586_144168662_144172585_144172658_144175404_144175488_144187332_144187494_144190811_144190947_144192236_144192302_144198444_144198487_144201760_144201817_144204239_144204292_144207940_144207996_144209335_144209488_144210751_144210851_144223079_144223413_144232370
ENSMUSG00000031075.20_9	chr7	-	4533	25	NIC	ENSMUSG00000031075.20	novel	4566	25	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	7.42637473244292	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCTGGTCTCTCCTGGCT	NA	False	NA	NA	False	AATAAA	-12	NA	144232626	144142287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_144144003_144146437_144146544_144149178_144149364_144150917_144150971_144157177_144157331_144161654_144161801_144162586_144162688_144164579_144164638_144165071_144165184_144165350_144165553_144168586_144168662_144172585_144172658_144175404_144175488_144187332_144187494_144190811_144190947_144192236_144192302_144198444_144198487_144201760_144201817_144202311_144202378_144204239_144204292_144207940_144207996_144209335_144209488_144210751_144210851_144223079_144223413_144232370
ENSMUSG00000031077.8_0	chr7	-	1500	2	FSM	ENSMUSG00000031077.8	ENSMUST00000033394.8	3903	2	27	2376	27	-2376	multi-exon	FALSE	canonical	3	26	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTGGCTGGGTGTGAT	NA	False	NA	-7	True	AATAAA	-19	NA	144136173	144133430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_144134598_144135840
ENSMUSG00000031077.8_2	chr7	-	2729	1	NIC	ENSMUSG00000031077.8	novel	3903	2	NA	NA	41	-2376	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTGGCTGGGTGTGAT	NA	False	NA	-7	True	AATAAA	-19	NA	144136159	144133430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_144133400_144136200
ENSMUSG00000031078.16_0	chr7	-	3016	18	FSM	ENSMUSG00000031078.16	ENSMUST00000103079.4	3286	18	269	1	5	-1	multi-exon	FALSE	canonical	0	0	junction_7	258.149054338875	1617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACTGTGTGATCTTCTG	NA	False	NA	-21	True	AATAAA	-13	NA	144024477	143989472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
ENSMUSG00000031078.16_1	chr7	-	2905	17	FSM	ENSMUSG00000031078.16	ENSMUST00000033407.13	2913	17	5	3	5	-1	multi-exon	FALSE	canonical	3	340	junction_7	190.956545694956	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACTGTGTGATCTTCTG	NA	False	NA	-21	True	AATAAA	-13	NA	144024477	143989472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
ENSMUSG00000031078.16_13	chr7	-	2965	17	ISM	ENSMUSG00000031078.16	ENSMUST00000103079.4	3286	18	4961	1	4697	-1	3prime_fragment	TRUE	canonical	0	0	junction_7	266.011865336868	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACTGTGTGATCTTCTG	NA	False	NA	-21	True	AATAAA	-13	NA	144019785	143989472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690
ENSMUSG00000031079.13_0	chrX	-	3608	5	NIC	ENSMUSG00000031079.13	novel	4634	5	NA	NA	13	-1298	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCTTTGTCTAAATTAC	6262	False	NA	NA	False	AAAAAG	-25	NA	20955753	20946710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_20949531_20950146_20950240_20950454_20950582_20954760_20954820_20955244
ENSMUSG00000031090.15_0	chr7	-	2376	21	FSM	ENSMUSG00000031090.15	ENSMUST00000033415.15	2641	21	12	253	-11	13	multi-exon	FALSE	canonical	3	51	junction_5	7.20416546173115	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGTATTTTATTATTAT	NA	False	NA	-3	True	TATAAA	-17	NA	143376566	143349573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143349794_143351561_143351739_143352191_143352321_143352777_143352848_143353527_143353660_143356932_143357040_143357750_143357887_143359651_143359821_143360616_143360720_143361123_143361173_143361721_143361847_143362528_143362604_143364905_143365038_143366226_143366345_143366499_143366589_143367126_143367179_143369322_143369413_143369910_143369965_143372829_143372947_143374908_143374970_143376395
ENSMUSG00000031090.15_13	chr7	-	168	1	ISM	ENSMUSG00000031090.15	ENSMUST00000033415.15	2641	21	26822	268	2822	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATGTTCTTTTTAAAGT	NA	False	NA	-18	True	TATAAA	-2	NA	143349756	143349588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_143349600_143349800
ENSMUSG00000031090.15_7	chr7	-	2282	20	NIC	ENSMUSG00000031090.15	novel	2641	21	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	2	3	junction_19	15.3155181744827	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGTTCTTTTTAAAGTG	NA	False	NA	-17	True	TATAAA	-3	NA	143376547	143349587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_143349794_143351561_143351739_143352191_143352321_143352777_143352848_143353527_143353660_143356932_143357040_143357750_143357887_143359651_143359821_143360616_143360720_143361123_143361173_143361721_143361847_143362528_143362604_143364905_143365038_143366226_143366345_143366499_143366589_143367126_143367179_143369322_143369413_143369910_143369965_143372829_143372947_143376395
ENSMUSG00000031093.15_0	chrX	+	6693	53	FSM	ENSMUSG00000031093.15	ENSMUST00000033419.13	6665	53	-29	1	-29	-1	multi-exon	FALSE	canonical	1	53	junction_52	21.5813446724207	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTCGAAGTGAAGGAAAT	NA	False	NA	7	True	AATAAA	-19	NA	35152455	35340214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_35152686_35208063_35208181_35208264_35208355_35209368_35209452_35210537_35210608_35210959_35211056_35224254_35224390_35226891_35227070_35227434_35227515_35228698_35228783_35232342_35232484_35233689_35233903_35239699_35239823_35241139_35241223_35243959_35244083_35244267_35244345_35246087_35246273_35246359_35246426_35248452_35248546_35251145_35251270_35256685_35256808_35257250_35257338_35258076_35258167_35263740_35263860_35266162_35266233_35266318_35266445_35267653_35267726_35270252_35270400_35271726_35271811_35272991_35273104_35275284_35275464_35277562_35277680_35279866_35279943_35280450_35280561_35283644_35283757_35291952_35292020_35293633_35293682_35295933_35296077_35297955_35298072_35301191_35301330_35304764_35304948_35308518_35308633_35310706_35310923_35311010_35311069_35316133_35316241_35323200_35323324_35324846_35324961_35325933_35326081_35330522_35330734_35331312_35331504_35331982_35332084_35333500_35333640_35339751
ENSMUSG00000031093.15_1	chrX	+	6739	54	NIC	ENSMUSG00000031093.15	novel	6665	53	NA	NA	-36	-1	combination_of_known_junctions	TRUE	canonical	1	53	junction_53	22.4821593760484	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTCGAAGTGAAGGAAAT	NA	False	NA	7	True	AATAAA	-19	NA	35152448	35340214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_35152686_35208063_35208181_35208264_35208355_35209368_35209452_35210537_35210608_35210959_35211056_35224254_35224390_35226891_35227070_35227434_35227515_35228698_35228783_35232342_35232484_35233689_35233903_35239699_35239823_35241139_35241223_35243959_35244083_35244267_35244345_35246087_35246273_35246359_35246426_35248452_35248546_35251145_35251270_35256685_35256808_35257250_35257338_35258076_35258167_35263740_35263860_35266162_35266233_35266318_35266445_35267653_35267726_35270252_35270400_35271726_35271811_35272991_35273104_35273595_35273635_35275284_35275464_35277562_35277680_35279866_35279943_35280450_35280561_35283644_35283757_35291952_35292020_35293633_35293682_35295933_35296077_35297955_35298072_35301191_35301330_35304764_35304948_35308518_35308633_35310706_35310923_35311010_35311069_35316133_35316241_35323200_35323324_35324846_35324961_35325933_35326081_35330522_35330734_35331312_35331504_35331982_35332084_35333500_35333640_35339751
ENSMUSG00000031095.16_17	chrX	-	5047	23	FSM	ENSMUSG00000031095.16	ENSMUST00000050083.6	3090	23	-11	-1946	2	1646	multi-exon	FALSE	non_canonical	3	112	junction_22	288.723912992818	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTAAAAAAATGTTTCTG	NA	False	NA	-32	True	AATAAA	-7	NA	37665071	37620504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37664956
ENSMUSG00000031095.16_2	chrX	-	4988	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	2	-1646	2	1646	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	1196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTAAAAAAATGTTTCTG	NA	False	NA	-32	True	AATAAA	-7	NA	37665071	37620504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
ENSMUSG00000031095.16_4	chrX	-	4986	20	FSM	ENSMUSG00000031095.16	ENSMUST00000016681.15	3354	20	14	-1646	14	1646	multi-exon	FALSE	non_canonical	3	1064	junction_17	109.947758937101	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTAAAAAAATGTTTCTG	8306	False	NA	-32	True	AATAAA	-7	NA	37653388	37620504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539
ENSMUSG00000031095.16_8	chrX	-	4758	21	ISM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	11189	-1646	-345	1646	3prime_fragment	FALSE	non_canonical	3	1019	junction_20	124.443109491848	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTAAAAAAATGTTTCTG	7810	False	NA	-32	True	AATAAA	-7	NA	37653884	37620504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809
ENSMUSG00000031099.17_0	chrX	-	3983	24	NIC	ENSMUSG00000031099.17	novel	3991	24	NA	NA	8	-18	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	5.5376354545258	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTGTCTATAAGAAATATAA	NA	False	NA	NA	False	AATAAA	-3	NA	46981421	46898264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_46898998_46900034_46900146_46912241_46912455_46912566_46912686_46915369_46915503_46917735_46917859_46930413_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975988_46976076_46981102
ENSMUSG00000031099.17_1	chrX	-	4769	23	NIC	ENSMUSG00000031099.17	novel	4798	23	NA	NA	9	-5	intron_retention	FALSE	canonical	2	9	junction_16	5.32517023357272	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTTCTCACTTCTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	46981420	46898514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_46900146_46912241_46912455_46912566_46912686_46915369_46915503_46917735_46917859_46930413_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975988_46976076_46981102
ENSMUSG00000031099.17_2	chrX	-	4758	23	FSM	ENSMUSG00000031099.17	ENSMUST00000088973.11	4798	23	35	5	2	-5	multi-exon	FALSE	canonical	0	0	junction_21	6.17462817162712	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTTCTCACTTCTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	46981394	46898514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_46900146_46912241_46912455_46912566_46912686_46915369_46915503_46917735_46917859_46930413_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975973_46976076_46981102
ENSMUSG00000031099.17_5	chrX	-	3784	24	NIC	ENSMUSG00000031099.17	novel	4024	24	NA	NA	-14	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	6.06361986129624	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGACTTTCTCACTTCT	NA	False	NA	NA	False	ATTAAA	-12	NA	46981443	46898516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_46898998_46900003_46900146_46912241_46912455_46912566_46912686_46915369_46915503_46917735_46917859_46930413_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975988_46976076_46981102
ENSMUSG00000031099.17_7	chrX	-	3766	24	FSM	ENSMUSG00000031099.17	ENSMUST00000101616.9	3991	24	-45	270	-12	-7	multi-exon	FALSE	canonical	0	0	junction_22	6.29309340266527	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGACTTTCTCACTTCT	NA	False	NA	NA	False	ATTAAA	-12	NA	46981441	46898516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_46898998_46900034_46900146_46912241_46912455_46912566_46912686_46915369_46915503_46917735_46917859_46930413_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975973_46976076_46981102
ENSMUSG00000031101.7_0	chrX	+	2644	8	NNC	ENSMUSG00000031101.7	novel	2677	8	NA	NA	29	-7	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	1.67819144635296	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAATTACCGTCGCCTG	NA	False	NA	NA	False	AATAAA	-10	NA	47235341	47250435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_47235595_47243402_47243499_47243852_47244000_47246295_47246438_47247609_47247759_47247918_47248129_47248280_47248432_47248939
ENSMUSG00000031101.7_1	chrX	+	2633	8	FSM	ENSMUSG00000031101.7	ENSMUST00000033427.7	2677	8	29	15	29	-15	multi-exon	FALSE	canonical	1	3	junction_3	1.30930734141595	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATAGAACTTAATTACC	NA	False	NA	NA	False	AATAAA	-2	NA	47235341	47250427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_47235595_47243402_47243499_47243852_47244000_47246295_47246438_47247609_47247759_47247918_47248129_47248280_47248432_47248942
ENSMUSG00000031103.13_0	chrX	-	3364	1	ISM	ENSMUSG00000031103.13	ENSMUST00000114958.8	6088	9	39756	4	39756	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGTGTTCAGATTCCAA	NA	False	NA	-2	True	NA	NA	NA	47503290	47499926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_47499900_47503300
ENSMUSG00000031103.13_1	chrX	-	6178	9	FSM	ENSMUSG00000031103.13	ENSMUST00000114958.8	6088	9	-100	10	-100	-7	multi-exon	FALSE	canonical	3	68	junction_6	6.29359793758705	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCTGAAGGTGTTCAGA	NA	False	NA	-8	True	NA	NA	NA	47543146	47499932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_47504324_47505523_47505902_47506747_47506941_47507031_47507116_47507884_47508077_47509152_47509246_47509580_47509753_47512954_47513232_47542748
ENSMUSG00000031103.13_2	chrX	-	4692	2	ISM	ENSMUSG00000031103.13	ENSMUST00000114958.8	6088	9	37222	10	37222	-7	3prime_fragment	FALSE	canonical	3	76	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCTGAAGGTGTTCAGA	NA	False	NA	-8	True	NA	NA	NA	47505824	47499932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_47504324_47505523
ENSMUSG00000031104.3_0	chrX	+	1019	2	FSM	ENSMUSG00000031104.3	ENSMUST00000033430.3	1158	2	138	1	138	-1	multi-exon	FALSE	canonical	3	18	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCACGTGGCTTTGTGTCT	NA	False	NA	5	True	AATAAA	-13	NA	47608299	47619108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_47608736_47618525
ENSMUSG00000031105.17_0	chrX	+	1479	11	NIC	ENSMUSG00000031105.17	novel	1760	11	NA	NA	43	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	33.2180673730426	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTTTGACTTTGTCTT	NA	False	NA	12	True	ATTAAA	-15	NA	47712332	47751169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_47712386_47712550_47712706_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ENSMUSG00000031105.17_3	chrX	+	1336	10	NIC	ENSMUSG00000031105.17	novel	1760	11	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_7	17.3254968040219	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTTTGACTTTGTCTT	NA	False	NA	12	True	ATTAAA	-15	NA	47712640	47751169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_47712706_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ENSMUSG00000031105.17_6	chrX	+	1580	11	FSM	ENSMUSG00000031105.17	ENSMUST00000114936.8	1582	11	-1	3	-1	-1	multi-exon	FALSE	canonical	3	5	junction_2	43.3798340245787	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCATTTTGACTTTGTCT	NA	False	NA	11	True	ATTAAA	-14	NA	47712640	47751168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_47712706_47712838_47713084_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ENSMUSG00000031105.17_7	chrX	+	1429	12	NIC	ENSMUSG00000031105.17	novel	1862	13	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	47.4155186089816	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTTTGACTTTGTCTT	NA	False	NA	12	True	ATTAAA	-15	NA	47712640	47751169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_47712706_47714472_47714518_47717012_47717061_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ENSMUSG00000031105.17_8	chrX	+	1573	11	FSM	ENSMUSG00000031105.17	ENSMUST00000033431.14	1760	11	185	2	-2	0	multi-exon	FALSE	canonical	1	2	junction_2	43.9708994677161	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTTTGACTTTGTCTT	NA	False	NA	12	True	ATTAAA	-15	NA	47712639	47751169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_47712706_47712838_47713075_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ENSMUSG00000031107.7_0	chrX	+	1662	6	FSM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	77	8	77	-8	multi-exon	FALSE	canonical	3	254	junction_1	50.9768574943572	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTTCGGGGCATTTGG	NA	False	NA	NA	False	NA	NA	NA	47783957	47799592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766_47797951_47798452
ENSMUSG00000031107.7_3	chrX	+	1622	5	ISM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	316	8	316	-8	3prime_fragment	FALSE	canonical	3	347	junction_4	19.8053023203384	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTTCGGGGCATTTGG	NA	False	NA	NA	False	NA	NA	NA	47784196	47799592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_47784313_47786277_47786330_47795181_47795312_47797766_47797951_47798452
ENSMUSG00000031107.7_5	chrX	+	1456	3	ISM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	11299	8	123	-8	3prime_fragment	FALSE	canonical	3	347	junction_2	21.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTTCGGGGCATTTGG	NA	False	NA	NA	False	NA	NA	NA	47795179	47799592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_47795312_47797766_47797951_47798452
ENSMUSG00000031107.7_6	chrX	+	743	1	ISM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	14973	4	3797	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCGGGGCATTTGGTCCA	NA	False	NA	NA	False	NA	NA	NA	47798853	47799596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_47798900_47799600
ENSMUSG00000031109.17_0	chrX	-	3151	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114918.9	3226	16	0	75	0	-75	multi-exon	FALSE	canonical	3	25	junction_4	10.7695042700313	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAATAATGAATAAATG	NA	False	NA	-30	True	NA	NA	NA	48377119	48099409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
ENSMUSG00000031109.17_10	chrX	-	3124	16	NIC	ENSMUSG00000031109.17	novel	3226	16	NA	NA	6	-63	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	14.0753527684231	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGATGGACTGGGCT	NA	False	NA	-18	True	AGTAAA	-10	NA	48377113	48099397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48112003_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
ENSMUSG00000031109.17_25	chrX	-	2997	15	NNC	ENSMUSG00000031109.17	novel	3226	16	NA	NA	0	-75	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.7816736910188	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAATAATGAATAAATG	NA	False	NA	-30	True	NA	NA	NA	48377119	48099409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169630_48375732_48375782_48376977
ENSMUSG00000031109.17_5	chrX	-	3105	15	FSM	ENSMUSG00000031109.17	ENSMUST00000114912.8	3167	15	2	60	2	-60	multi-exon	FALSE	canonical	2	12	junction_13	14.647560220329	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGATGGACTGGGCTGTG	NA	False	NA	-15	True	AGTAAA	-13	NA	48377117	48099394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_48100512_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
ENSMUSG00000031109.17_7	chrX	-	3123	15	NIC	ENSMUSG00000031109.17	novel	3226	16	NA	NA	0	-55	combination_of_known_junctions	TRUE	canonical	3	19	junction_1	12.2975441384341	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGACTGGGCTGTGAGGCT	NA	False	NA	-10	True	AATAAA	-3	NA	48377119	48099389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_48100512_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
ENSMUSG00000031109.17_9	chrX	-	3134	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114914.8	3936	16	-24	826	6	-75	multi-exon	FALSE	canonical	2	12	junction_14	13.255774423079	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAATAATGAATAAATG	NA	False	NA	-30	True	NA	NA	NA	48377113	48099409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
ENSMUSG00000031111.17_1	chrX	-	4397	20	FSM	ENSMUSG00000031111.17	ENSMUST00000033442.14	4421	20	16	8	2	-8	multi-exon	FALSE	canonical	0	0	junction_6	2.03569259008565	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAACCATGGTAGTGG	NA	False	NA	NA	False	AATAAA	-24	NA	48886610	48871420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_48871830_48871976_48872101_48872488_48872768_48872898_48873187_48873382_48873671_48873848_48874137_48874864_48875153_48875735_48876015_48876234_48876526_48876909_48876943_48877024_48877096_48878958_48879080_48879391_48879644_48880163_48880458_48880691_48880977_48882780_48883069_48883368_48883651_48883999_48884027_48884155_48884285_48886529
ENSMUSG00000031111.17_4	chrX	-	2648	14	NIC	ENSMUSG00000031111.17	novel	2515	13	NA	NA	5	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1.88736063790543	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAACATTTGTTGTAT	NA	False	NA	NA	False	AATAAA	-24	NA	48886621	48875225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_48875430_48875735_48876015_48876234_48876526_48876909_48876943_48877024_48877096_48878958_48879080_48879391_48879644_48880163_48880458_48880691_48880977_48882780_48883069_48883368_48883651_48883999_48884027_48884155_48884285_48886529
ENSMUSG00000031111.17_5	chrX	-	1758	5	FSM	ENSMUSG00000031111.17	ENSMUST00000114891.2	1761	5	2	1	2	-1	multi-exon	FALSE	canonical	2	4	junction_2	1.08972473588517	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATATAGCTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	48886624	48881843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_48883069_48883368_48883651_48883999_48884027_48884155_48884285_48886529
ENSMUSG00000031112.11_0	chrX	+	3289	12	FSM	ENSMUSG00000031112.11	ENSMUST00000033444.11	3639	12	350	0	-44	0	multi-exon	TRUE	canonical	3	20	junction_11	5.29618605950164	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATCCTCGATGTTTGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	49930273	49981974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_49930424_49930555_49930713_49959132_49959364_49968365_49968423_49974465_49974575_49974663_49974822_49975527_49975714_49976737_49976887_49977892_49977987_49978565_49978629_49978709_49978847_49980176
ENSMUSG00000031112.11_1	chrX	+	3029	11	NIC	ENSMUSG00000031112.11	novel	3639	12	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	9.94786409235671	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATCCTCGATGTTTGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	49930302	49981974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_49930424_49930555_49930713_49968365_49968423_49974465_49974575_49974663_49974822_49975527_49975714_49976737_49976887_49977892_49977987_49978565_49978629_49978709_49978847_49980176
ENSMUSG00000031112.11_2	chrX	+	4238	12	NIC	ENSMUSG00000031112.11	novel	3639	12	NA	NA	-3	-21	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	8.73862897505303	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAATATTTAAATTT	NA	False	NA	NA	False	NA	NA	NA	49930314	49981953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_49930424_49930555_49930713_49959132_49959364_49968365_49968423_49973454_49974575_49974663_49974822_49975527_49975714_49976737_49976887_49977892_49977987_49978565_49978629_49978709_49978847_49980176
ENSMUSG00000031112.11_6	chrX	+	3198	11	ISM	ENSMUSG00000031112.11	ENSMUST00000033444.11	3639	12	573	0	179	0	3prime_fragment	FALSE	canonical	3	20	junction_10	5.55067563455117	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATCCTCGATGTTTGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	49930496	49981974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_49930713_49959132_49959364_49968365_49968423_49974465_49974575_49974663_49974822_49975527_49975714_49976737_49976887_49977892_49977987_49978565_49978629_49978709_49978847_49980176
ENSMUSG00000031118.9_0	chrX	-	4385	2	NIC	ENSMUSG00000031118.9	novel	1454	4	NA	NA	-11	1951	intron_retention	FALSE	canonical	3	81	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATATTGGCTTATGGAC	NA	False	NA	NA	False	NA	NA	NA	51061660	51055620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_51059953_51061607
ENSMUSG00000031118.9_1	chrX	-	2092	3	NIC	ENSMUSG00000031118.9	novel	1454	4	NA	NA	-14	0	intron_retention	FALSE	canonical	3	81	junction_2	1	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGTTGCTCCGTTTCA	NA	False	NA	-2	True	CATAAA	-17	NA	51061663	51057571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_51058747_51059091_51059953_51061607
ENSMUSG00000031118.9_2	chrX	-	1393	4	NIC	ENSMUSG00000031118.9	novel	1454	4	NA	NA	-12	-1	combination_of_known_splicesites	FALSE	canonical	3	60	junction_2	10.4029910228848	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTCTGTTGCTCCGTTTC	NA	False	NA	-3	True	CATAAA	-16	NA	51061661	51057572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_51058747_51059091_51059163_51059858_51059953_51061607
ENSMUSG00000031118.9_3	chrX	-	1517	5	NIC	ENSMUSG00000031118.9	novel	1232	4	NA	NA	-22	-4	combination_of_known_junctions	FALSE	canonical	3	7	junction_3	35.6195171219375	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTACTTCTGTTGCTCCGT	NA	False	NA	-6	True	CATAAA	-13	NA	51061671	51057575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_51058747_51059091_51059163_51059359_51059477_51059858_51059953_51061607
ENSMUSG00000031118.9_4	chrX	-	336	1	ISM	ENSMUSG00000031118.9	ENSMUST00000033449.8	1454	4	3741	1	2016	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTCTGTTGCTCCGTTTC	NA	False	NA	-3	True	CATAAA	-16	NA	51057908	51057572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_51057600_51057900
ENSMUSG00000031118.9_5	chrX	-	1621	2	ISM	ENSMUSG00000031118.9	ENSMUST00000114866.2	1232	4	383	-193	383	-4	intron_retention	FALSE	canonical	3	83	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTACTTCTGTTGCTCCGT	NA	False	NA	-6	True	CATAAA	-13	NA	51059541	51057575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_51058747_51059091
ENSMUSG00000031119.5_1	chrX	-	2724	9	FSM	ENSMUSG00000031119.5	ENSMUST00000033450.3	2651	9	-76	3	-76	-3	multi-exon	FALSE	canonical	3	220	junction_5	29.8493613834534	481	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAGCTGGAAAATTTCC	NA	False	NA	-22	True	ATTAAA	-12	NA	51254205	51141900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_51142604_51142693_51142870_51143322_51143460_51145536_51145684_51145777_51145909_51151734_51151901_51163170_51163563_51180518_51180678_51253492
ENSMUSG00000031125.3_0	chrX	+	1017	8	FSM	ENSMUSG00000031125.3	ENSMUST00000033458.3	1022	8	-5	10	-5	-10	multi-exon	FALSE	canonical	3	19	junction_1	16.2819544532076	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGAATAAGTGAGTGGCA	NA	False	NA	NA	False	AATAAA	-5	NA	55181926	55198848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_55181986_55183330_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
ENSMUSG00000031125.3_2	chrX	+	684	7	NIC	ENSMUSG00000031125.3	novel	1022	8	NA	NA	-5	-217	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	19.6864307469779	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTATGAAACAGAGTTTG	NA	False	NA	NA	False	AATAAA	-21	NA	55181926	55198641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_55181986_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
ENSMUSG00000031133.13_0	chrX	-	3199	5	FSM	ENSMUSG00000031133.13	ENSMUST00000151768.2	2696	5	-504	1	-504	-1	multi-exon	FALSE	canonical	1	1	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCCTGTGTTTTATTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	56286753	56276845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_56279012_56280216_56280272_56282345_56282446_56284525_56284604_56285953
ENSMUSG00000031134.17_1	chrX	-	2317	10	FSM	ENSMUSG00000031134.17	ENSMUST00000140384.8	2139	10	4	-182	4	182	multi-exon	FALSE	canonical	3	61	junction_8	6.66296193358442	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGGTGTTGGGTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	56438337	56428707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_56429922_56430492_56430582_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
ENSMUSG00000031134.17_18	chrX	-	2048	9	NIC	ENSMUSG00000031134.17	novel	2108	9	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	19.0028780714922	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCTGAAGCTGCAAAC	NA	False	NA	-16	True	AATAAA	-15	NA	56438339	56431721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_56432754_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
ENSMUSG00000031134.17_3	chrX	-	2322	10	NIC	ENSMUSG00000031134.17	novel	2139	10	NA	NA	2	182	combination_of_known_junctions	FALSE	canonical	3	14	junction_9	18.9489242015229	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGGTGTTGGGTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	56438339	56428707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_56429922_56430492_56430582_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437062_56438211
ENSMUSG00000031134.17_6	chrX	-	278	1	Genic_Genomic	ENSMUSG00000031134.17	novel	NA	NA	NA	NA	9172	182	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGGTGTTGGGTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	56428985	56428707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_56428700_56429000
ENSMUSG00000031137.18_0	chrX	-	2522	5	FSM	ENSMUSG00000031137.18	ENSMUST00000033473.12	2499	5	-31	8	-31	-8	multi-exon	FALSE	canonical	3	70	junction_2	5.62916512459885	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAGGAAAACTTCAA	NA	False	NA	NA	False	AATAAA	-17	NA	58179827	58107512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199_58177311_58179236
ENSMUSG00000031139.17_1	chrX	-	3803	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	830	-4	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_27	79.0220750182634	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGATACTCTGGTGTTC	NA	False	NA	-9	True	AATAAA	-22	NA	59223619	59101322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
ENSMUSG00000031139.17_145	chrX	-	3222	15	ISM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	-70	56490	-70	-56487	5prime_fragment	FALSE	canonical	3	390	junction_14	50.407775963149	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTGTTCTACTTTGTT	NA	False	NA	-2	True	NA	NA	NA	59224519	59157805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
ENSMUSG00000031139.17_6	chrX	-	4290	28	FSM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	-70	7	-70	-4	multi-exon	FALSE	canonical	3	390	junction_27	54.2283947104	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGATACTCTGGTGTTC	NA	False	NA	-9	True	AATAAA	-22	NA	59224519	59101322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
ENSMUSG00000031143.5_2	chrX	-	2215	17	FSM	ENSMUSG00000031143.5	ENSMUST00000033483.5	2353	17	137	1	137	0	multi-exon	FALSE	canonical	3	186	junction_12	25.3807721267498	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCACGCTTAGGCATGGAT	NA	False	NA	-10	True	AATAAA	-18	NA	7471619	7460048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463033_7463776_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
ENSMUSG00000031145.16_0	chrX	+	2089	9	FSM	ENSMUSG00000031145.16	ENSMUST00000033485.14	2301	9	137	75	-75	-70	multi-exon	FALSE	canonical	3	64	junction_3	5.54526825320471	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAATGGTTTTGCCTCAA	NA	False	NA	22	True	AAGAAA	-18	NA	7523635	7534122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7523740_7524859_7524946_7525774_7525959_7529703_7529818_7530091_7530230_7531168_7531373_7531465_7531653_7532510_7532811_7533350
ENSMUSG00000031145.16_3	chrX	+	2645	8	ISM	ENSMUSG00000031145.16	ENSMUST00000033485.14	2301	9	121	75	-91	-70	intron_retention	FALSE	canonical	3	64	junction_3	5.92814112035612	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAATGGTTTTGCCTCAA	NA	False	NA	22	True	AAGAAA	-18	NA	7523619	7534122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_7523740_7524859_7524946_7525774_7525959_7529703_7529818_7530091_7530230_7531168_7531373_7531465_7531653_7532510
ENSMUSG00000031146.7_0	chrX	-	1103	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	49	5	-28	-5	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	968	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAATGAATAAGTTAACTT	NA	False	NA	NA	False	AATAAA	-23	NA	7537580	7534184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
ENSMUSG00000031148.15_0	chrX	+	3464	11	FSM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	81	34	81	-34	multi-exon	FALSE	canonical	3	223	junction_9	32.218007387174	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	7563450	7576467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7571672_7572249_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
ENSMUSG00000031148.15_24	chrX	+	1228	1	ISM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	11870	34	3148	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATAAATAAAAA	2013	False	NA	NA	False	NA	NA	NA	7575239	7576467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_7575200_7576500
ENSMUSG00000031148.15_5	chrX	+	4041	10	NIC	ENSMUSG00000031148.15	novel	3579	11	NA	NA	82	-34	intron_retention	FALSE	canonical	3	223	junction_8	33.549300373563	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	7563451	7576467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
ENSMUSG00000031149.8_0	chrX	+	1210	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	123	6	123	-6	multi-exon	FALSE	canonical	3	755	junction_2	75.5	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTAGTTTGGCCTCCTGT	1293	False	NA	1	True	AATAAA	-14	NA	7594800	7597297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7595002_7595954_7596173_7596506
ENSMUSG00000031149.8_1	chrX	+	1544	2	ISM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	123	6	123	-6	intron_retention	FALSE	canonical	3	906	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTAGTTTGGCCTCCTGT	1293	False	NA	1	True	AATAAA	-14	NA	7594800	7597297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_7595002_7595954
ENSMUSG00000031150.14_0	chrX	-	3826	10	NIC	ENSMUSG00000031150.14	novel	3658	10	NA	NA	2	-8	intron_retention	FALSE	canonical	3	16	junction_9	8.46926177784867	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACTTGATTGAGTC	NA	False	NA	-12	True	AATAAA	-6	NA	7617142	7597960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608_7604763_7616836
ENSMUSG00000031150.14_1	chrX	-	3702	11	NIC	ENSMUSG00000031150.14	novel	3658	10	NA	NA	-8	-8	intron_retention	FALSE	canonical	0	0	junction_10	13.1057239403247	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACTTGATTGAGTC	NA	False	NA	-12	True	AATAAA	-6	NA	7607571	7597960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608_7604763_7606587_7606649_7607450
ENSMUSG00000031150.14_13	chrX	-	3732	9	NIC	ENSMUSG00000031150.14	novel	3658	10	NA	NA	3	-2	intron_retention	FALSE	canonical	0	0	junction_1	10.5704481929576	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGATTGAGTCTCTGTC	NA	False	NA	-6	True	AATAAA	-12	NA	7617141	7597954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7600338_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608_7604763_7616836
ENSMUSG00000031150.14_15	chrX	-	2565	3	ISM	ENSMUSG00000031150.14	ENSMUST00000033490.13	3658	10	5956	4	-1481	-4	3prime_fragment	FALSE	canonical	3	40	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTTGATTGAGTCTCTG	3764	False	NA	-8	True	AATAAA	-10	NA	7601624	7597956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7600338_7601310_7601410_7601539
ENSMUSG00000031150.14_2	chrX	-	3895	11	NIC	ENSMUSG00000031150.14	novel	3658	10	NA	NA	0	-2	intron_retention	FALSE	canonical	1	2	junction_10	12.7357763799464	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGATTGAGTCTCTGTC	NA	False	NA	-6	True	AATAAA	-12	NA	7617144	7597954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608_7604763_7606587_7606649_7616836
ENSMUSG00000031150.14_21	chrX	-	4916	8	NIC	ENSMUSG00000031150.14	novel	3658	10	NA	NA	2	-13	intron_retention	FALSE	canonical	3	16	junction_7	6.77932029583124	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATAAACTGAACTTGATT	NA	False	NA	-17	True	AATAAA	-1	NA	7617134	7597965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608_7604763_7616836
ENSMUSG00000031150.14_3	chrX	-	3499	9	ISM	ENSMUSG00000031150.14	ENSMUST00000033490.13	3658	10	2845	2	1711	-2	3prime_fragment	TRUE	canonical	3	22	junction_6	7.59831395771457	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGATTGAGTCTCTGTC	653	False	NA	-6	True	AATAAA	-12	NA	7604735	7597954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608
ENSMUSG00000031150.14_4	chrX	-	2990	5	ISM	ENSMUSG00000031150.14	ENSMUST00000033490.13	3658	10	4376	6	-3061	-6	3prime_fragment	FALSE	canonical	3	34	junction_4	2.48746859276655	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAACTTGATTGAGTCTC	2184	False	NA	-10	True	AATAAA	-8	NA	7603204	7597958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930
ENSMUSG00000031150.14_5	chrX	-	3881	11	NIC	ENSMUSG00000031150.14	novel	3658	10	NA	NA	2	-10	intron_retention	FALSE	canonical	0	0	junction_10	13.1057239403247	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGAACTTGATTGAG	NA	False	NA	-14	True	AATAAA	-4	NA	7617142	7597962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608_7604763_7606587_7606645_7616836
ENSMUSG00000031150.14_6	chrX	-	1985	1	ISM	ENSMUSG00000031150.14	ENSMUST00000033490.13	3658	10	7635	8	198	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACTTGATTGAGTC	5443	False	NA	-12	True	AATAAA	-6	NA	7599945	7597960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7598000_7599900
ENSMUSG00000031150.14_9	chrX	-	3869	10	NIC	ENSMUSG00000031150.14	novel	3658	10	NA	NA	-1	-2	intron_retention	FALSE	canonical	1	1	junction_8	12.1563883525403	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGATTGAGTCTCTGTC	NA	False	NA	-6	True	AATAAA	-12	NA	7617145	7597954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604518_7604600_7604763_7616836
ENSMUSG00000031153.17_0	chrX	+	3565	22	NIC	ENSMUSG00000031153.17	novel	2867	24	NA	NA	0	0	intron_retention	FALSE	canonical	2	9	junction_3	16.2201408909276	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTCTGGTCTCATTCT	3259	False	NA	7	True	NA	NA	NA	7656232	7686802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7656308_7658308_7658376_7658514_7658577_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7685561_7686240
ENSMUSG00000031153.17_11	chrX	+	3776	25	NIC	ENSMUSG00000031153.17	novel	3015	26	NA	NA	1	-2	intron_retention	FALSE	canonical	2	9	junction_12	17.9534506123165	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGACTGTCTGGTCTCATT	3274	False	NA	5	True	NA	NA	NA	7656247	7686800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7669832_7669926_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7685561_7686240
ENSMUSG00000031153.17_12	chrX	+	3685	24	NIC	ENSMUSG00000031153.17	novel	3156	25	NA	NA	1	-2	intron_retention	FALSE	canonical	2	42	junction_23	10.5842555254659	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGACTGTCTGGTCTCATT	3272	False	NA	5	True	NA	NA	NA	7656245	7686800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7685561_7686240
ENSMUSG00000031153.17_13	chrX	+	2780	23	NIC	ENSMUSG00000031153.17	novel	2867	24	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	2	9	junction_3	16.0309617782961	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACTGACTGTCTGGTCT	3261	False	NA	1	True	NA	NA	NA	7656234	7686796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7656308_7658308_7658376_7658514_7658577_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
ENSMUSG00000031153.17_3	chrX	+	2907	25	FSM	ENSMUSG00000031153.17	ENSMUST00000065932.14	3156	25	243	6	0	-2	multi-exon	FALSE	canonical	2	42	junction_24	10.7256669049321	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGACTGTCTGGTCTCATT	3273	False	NA	5	True	NA	NA	NA	7656246	7686800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
ENSMUSG00000031153.17_5	chrX	+	3614	24	NIC	ENSMUSG00000031153.17	novel	3015	26	NA	NA	0	0	intron_retention	FALSE	canonical	2	42	junction_23	10.8740860163911	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTCTGGTCTCATTCT	3273	False	NA	7	True	NA	NA	NA	7656246	7686802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
ENSMUSG00000031153.17_7	chrX	+	3012	26	FSM	ENSMUSG00000031153.17	ENSMUST00000115675.9	3015	26	1	2	1	-2	multi-exon	FALSE	canonical	2	9	junction_12	17.6906755099968	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGACTGTCTGGTCTCATT	3261	False	NA	5	True	NA	NA	NA	7656234	7686800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7669832_7669926_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
ENSMUSG00000031154.16_0	chrX	+	2683	9	FSM	ENSMUSG00000031154.16	ENSMUST00000033494.16	4259	9	229	1347	4	-5	multi-exon	FALSE	canonical	3	377	junction_8	48.0999935031181	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCCCTGAGCAACTCTA	NA	False	NA	-1	True	AATAAA	-11	NA	7708298	7741518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740471
ENSMUSG00000031154.16_2	chrX	+	2787	8	NIC	ENSMUSG00000031154.16	novel	2708	9	NA	NA	3	-1	intron_retention	FALSE	canonical	3	377	junction_7	51.3459654039663	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGAGCAACTCTATTCT	NA	False	NA	3	True	AATAAA	-15	NA	7708297	7741522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7708950_7722542_7722637_7733753_7733819_7733905_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740471
ENSMUSG00000031154.16_28	chrX	+	2125	10	NIC	ENSMUSG00000031154.16	novel	2543	10	NA	NA	1	10	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	160.029472594161	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAATATTCATGGCAA	NA	False	NA	NA	False	ATTAAA	-31	NA	7708321	7741109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7708708_7708836_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740468
ENSMUSG00000031154.16_3	chrX	+	2513	9	FSM	ENSMUSG00000031154.16	ENSMUST00000115666.8	2471	9	-37	-5	-12	5	multi-exon	FALSE	canonical	3	94	junction_8	127.394073645519	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCAAAAAGAATATTCAT	NA	False	NA	NA	False	ATTAAA	-26	NA	7708057	7741104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740468
ENSMUSG00000031154.16_5	chrX	+	2116	10	FSM	ENSMUSG00000031154.16	ENSMUST00000115668.10	2543	10	-1	428	-1	2	multi-exon	FALSE	canonical	3	78	junction_1	125.359138399428	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAATCAAAAAGAATATT	NA	False	NA	NA	False	ATTAAA	-23	NA	7708319	7741101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7708708_7708836_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740471
ENSMUSG00000031155.18_0	chrX	+	2035	6	FSM	ENSMUSG00000031155.18	ENSMUST00000033495.15	2045	6	6	4	6	-4	multi-exon	FALSE	canonical	3	69	junction_5	7.30479294709987	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTGGATTGCCATTTAT	NA	False	NA	1	True	AATAAA	-11	NA	7744546	7749667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7744796_7744922_7745033_7745866_7745918_7747486_7747860_7748311_7748489_7748592
ENSMUSG00000031156.19_0	chrX	+	2323	4	FSM	ENSMUSG00000031156.19	ENSMUST00000115660.12	3094	4	301	470	1	-5	multi-exon	FALSE	canonical	3	84	junction_1	9.0921211313239	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTCCATGTGTAGCTT	NA	False	NA	1	True	AATAAA	-13	NA	7750567	7760261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378
ENSMUSG00000031156.19_6	chrX	+	1517	1	ISM	ENSMUSG00000031156.19	ENSMUST00000115660.12	3094	4	8482	466	13	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCATGTGTAGCTTTCTG	NA	False	NA	5	True	AATAAA	-17	NA	7758748	7760265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_7758700_7760300
ENSMUSG00000031157.11_0	chrX	-	997	6	FSM	ENSMUSG00000031157.11	ENSMUST00000115654.8	1374	6	562	-185	259	-7	multi-exon	FALSE	canonical	3	504	junction_3	27.695486996982	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATATCCATGAGGCTTGA	928	False	NA	-8	True	AATAAA	-15	NA	7764876	7760764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789
ENSMUSG00000031157.11_1	chrX	-	1134	7	FSM	ENSMUSG00000031157.11	ENSMUST00000115655.8	1148	7	74	-60	-9	-4	multi-exon	FALSE	canonical	3	349	junction_6	78.4950458450864	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCATGAGGCTTGAGTG	660	False	NA	-5	True	AATAAA	-18	NA	7765144	7760761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765009
ENSMUSG00000031157.11_3	chrX	-	1068	7	FSM	ENSMUSG00000031157.11	ENSMUST00000033497.9	1104	7	32	4	32	-4	multi-exon	FALSE	canonical	3	139	junction_6	154.654902569847	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCATGAGGCTTGAGTG	328	False	NA	-5	True	AATAAA	-18	NA	7765476	7760761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765407
ENSMUSG00000031157.11_4	chrX	-	1028	7	FSM	ENSMUSG00000031157.11	ENSMUST00000156741.8	763	7	3	-268	3	-7	multi-exon	FALSE	canonical	3	64	junction_6	182.287014226345	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATATCCATGAGGCTTGA	568	False	NA	-8	True	AATAAA	-15	NA	7765236	7760764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765204
ENSMUSG00000031157.11_5	chrX	-	1121	7	NIC	ENSMUSG00000031157.11	novel	1148	7	NA	NA	-8	-7	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	180.072824774373	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATATCCATGAGGCTTGA	661	False	NA	-8	True	AATAAA	-15	NA	7765143	7760764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765018
ENSMUSG00000031158.12_1	chrX	+	871	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	19	1491	19	-110	multi-exon	FALSE	canonical	3	843	junction_3	44.2511016812011	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTCTGTGTATGTCTGC	1208	False	NA	24	True	TTTAAA	-11	NA	7765614	7773099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
ENSMUSG00000031160.5_0	chrX	-	973	2	FSM	ENSMUSG00000031160.5	ENSMUST00000033500.5	1077	2	96	8	96	-8	multi-exon	FALSE	canonical	3	21	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTATACTAAATCTTTGTT	NA	False	NA	NA	False	AATAAA	-23	NA	7794750	7790522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7791453_7794707
ENSMUSG00000031161.16_0	chrX	-	4370	28	ISM	ENSMUSG00000031161.16	ENSMUST00000033501.15	4142	29	94	8	-28	-6	intron_retention	FALSE	canonical	3	320	junction_26	43.7256065642336	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTGAAGAAAGTGCTT	NA	False	NA	NA	False	AATAAA	-15	NA	7814034	7796368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363
ENSMUSG00000031161.16_1	chrX	-	3968	29	FSM	ENSMUSG00000031161.16	ENSMUST00000115642.8	4069	29	91	10	-31	-6	multi-exon	FALSE	canonical	3	285	junction_28	46.7627942767691	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTGAAGAAAGTGCTT	NA	False	NA	NA	False	AATAAA	-15	NA	7814037	7796368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813888
ENSMUSG00000031161.16_8	chrX	-	4026	29	FSM	ENSMUSG00000031161.16	ENSMUST00000033501.15	4142	29	107	9	-15	-7	multi-exon	FALSE	canonical	3	77	junction_28	71.4613049995933	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAACCTGAAGAAAGTGCT	NA	False	NA	NA	False	AATAAA	-14	NA	7814021	7796369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813813
ENSMUSG00000031163.3_0	chrX	-	950	4	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	2661	-6	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	9.28559218478941	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGAGTTCCTCACTCTTG	NA	False	NA	-15	True	AATAAA	-15	NA	7882070	7870444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_7870742_7871941_7872098_7881456_7881595_7881711
ENSMUSG00000031165.7_1	chrX	-	2357	12	FSM	ENSMUSG00000031165.7	ENSMUST00000033505.7	2114	12	36	-279	36	279	multi-exon	FALSE	canonical	2	6	junction_8	4.36552989219744	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTTGAAATTTTGTTAT	7477	False	NA	NA	False	NA	NA	NA	7956701	7947412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7948229_7951744_7951860_7952080_7952536_7952802_7952957_7953168_7953212_7953999_7954175_7954962_7955017_7955112_7955155_7955274_7955378_7955494_7955582_7956082_7956224_7956529
ENSMUSG00000031166.14_0	chrX	-	3931	9	FSM	ENSMUSG00000031166.14	ENSMUST00000033506.13	4183	9	249	3	-48	-1	multi-exon	TRUE	canonical	3	18	junction_8	7.92839044194974	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGGGCCTCTCTTCAT	7170	False	NA	-2	True	AATAAA	-43	NA	7998798	7989542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525
ENSMUSG00000031166.14_1	chrX	-	1640	1	ISM	ENSMUSG00000031166.14	ENSMUST00000033506.13	4183	9	7865	3	3574	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGGGCCTCTCTTCAT	NA	False	NA	-2	True	AATAAA	-43	NA	7991182	7989542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7989500_7991200
ENSMUSG00000031166.14_2	chrX	-	2802	4	FSM	ENSMUSG00000031166.14	ENSMUST00000131929.2	774	4	368	-2396	368	-2	multi-exon	FALSE	canonical	3	41	junction_2	1.69967317119759	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTTGGGCCTCTCTTCA	NA	False	NA	-3	True	AATAAA	-42	NA	7994388	7989543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272
ENSMUSG00000031166.14_3	chrX	-	3783	10	NIC	ENSMUSG00000031166.14	novel	1749	10	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_9	11.515957795625	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGGGCCTCTCTTCAT	6915	False	NA	-2	True	AATAAA	-43	NA	7999053	7989542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525_7998606_7999008
ENSMUSG00000031166.14_7	chrX	-	4093	8	ISM	ENSMUSG00000031166.14	ENSMUST00000130832.8	4374	9	709	-19	450	-2	3prime_fragment	FALSE	canonical	3	33	junction_5	3.69776545872708	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTTGGGCCTCTCTTCA	7668	False	NA	-3	True	AATAAA	-42	NA	7998300	7989543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623
ENSMUSG00000031167.17_0	chrX	-	1708	1	ISM	ENSMUSG00000031167.17	ENSMUST00000155599.2	2326	2	2236	0	2236	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGTGTTACACGTATGT	8904	False	NA	0	True	ATTAAA	-19	NA	8006921	8005213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_8005200_8006900
ENSMUSG00000031167.17_12	chrX	-	1149	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	26	8	0	-1	multi-exon	FALSE	canonical	3	391	junction_1	305.254766092558	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAATCAATACTGATAAT	6561	False	NA	-17	True	ATTAAA	-15	NA	8011936	8008607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000031167.17_16	chrX	-	1146	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115621.9	1338	7	183	9	0	0	multi-exon	FALSE	canonical	3	764	junction_2	192.247597875471	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATCAATACTGATAATG	6561	False	NA	-16	True	ATTAAA	-16	NA	8011936	8008606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000031167.17_19	chrX	-	1155	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115617.10	1152	7	-1	-2	0	2	multi-exon	FALSE	canonical	3	391	junction_1	339.486213105759	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAATACTGATAATGCT	6561	False	NA	-14	True	ATTAAA	-18	NA	8011936	8008604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000031167.17_2	chrX	-	1151	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115616.8	1225	7	76	-2	0	2	multi-exon	FALSE	canonical	3	529	junction_2	255.122192945524	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAATACTGATAATGCT	6561	False	NA	-14	True	ATTAAA	-18	NA	8011936	8008604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8009195_8009489_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000031167.17_3	chrX	-	4830	6	NIC	ENSMUSG00000031167.17	novel	2792	7	NA	NA	0	-1	intron_retention	FALSE	canonical	3	764	junction_1	193.394312222464	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGTGTGTTACACGT	6561	False	NA	-4	True	ATTAAA	-15	NA	8011936	8005217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000031168.15_1	chrX	-	1096	5	FSM	ENSMUSG00000031168.15	ENSMUST00000033509.15	1743	5	641	6	27	-4	multi-exon	FALSE	canonical	3	751	junction_2	18.0190871022924	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACACTGAGAGATATTTA	NA	False	NA	-9	True	AATAAA	-13	NA	8059110	8051573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8052073_8052882_8053014_8053121_8053159_8056317_8056676_8059039
ENSMUSG00000031168.15_2	chrX	-	1206	4	NIC	ENSMUSG00000031168.15	novel	1743	5	NA	NA	27	-2	intron_retention	FALSE	canonical	3	780	junction_2	7.25718035235908	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACTGAGAGATATTTAAT	NA	False	NA	-7	True	AATAAA	-15	NA	8059110	8051571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_8052073_8052882_8053159_8056317_8056676_8059039
ENSMUSG00000031169.14_0	chrX	-	1841	14	FSM	ENSMUSG00000031169.14	ENSMUST00000082320.12	1883	14	36	6	2	-1	multi-exon	FALSE	canonical	1	2	junction_7	23.6039812106789	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACAGGCTCGGTTTTTTG	2000	False	NA	-6	True	AATAAA	-13	NA	8072728	8060092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069264_8069283_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
ENSMUSG00000031169.14_1	chrX	-	1824	13	FSM	ENSMUSG00000031169.14	ENSMUST00000089402.10	1839	13	11	4	1	-1	multi-exon	TRUE	canonical	3	57	junction_2	6.61857655055493	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACAGGCTCGGTTTTTTG	1999	False	NA	-6	True	AATAAA	-13	NA	8072729	8060092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
ENSMUSG00000031170.15_0	chrX	+	1850	16	FSM	ENSMUSG00000031170.15	ENSMUST00000033512.11	1868	16	13	5	13	0	multi-exon	FALSE	canonical	1	1	junction_9	2.63818119165458	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACCTGGTCTGAGCCGT	5426	False	NA	NA	False	AATAAA	-12	NA	8137632	8146413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_8137745_8138125_8138183_8138269_8138349_8138890_8139007_8139113_8139188_8139825_8139919_8140036_8140116_8142358_8142442_8142817_8142877_8142978_8143108_8143259_8143340_8143931_8144033_8144267_8144384_8145096_8145242_8145331_8145436_8145990
ENSMUSG00000031171.12_2	chrX	-	1628	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115595.8	1656	13	26	2	-6	-2	multi-exon	FALSE	canonical	3	233	junction_4	23.6231995198694	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATATGCACGTTGCTTAC	NA	False	NA	-16	True	AATAAA	-19	NA	8118608	8106660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ENSMUSG00000031171.12_5	chrX	-	1619	13	FSM	ENSMUSG00000031171.12	ENSMUST00000033513.10	3425	13	44	1762	1	-10	multi-exon	FALSE	canonical	3	43	junction_4	72.5114933418604	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCCTACATATGCACG	NA	False	NA	-24	True	AATAAA	-11	NA	8118601	8106668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111895_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ENSMUSG00000031174.18_0	chrX	-	2706	17	FSM	ENSMUSG00000031174.18	ENSMUST00000073392.11	2926	17	213	7	26	-7	multi-exon	FALSE	canonical	3	77	junction_1	17.609368067878	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGATATGTGCTTGGA	NA	False	NA	-7	True	AATAAA	-25	NA	10082946	10024461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ENSMUSG00000031174.18_19	chrX	-	2075	13	NIC	ENSMUSG00000031174.18	novel	2926	17	NA	NA	27	-7	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	32.0350285711681	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGATATGTGCTTGGA	NA	False	NA	-7	True	AATAAA	-25	NA	10082945	10024461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ENSMUSG00000031174.18_2	chrX	-	2680	17	FSM	ENSMUSG00000031174.18	ENSMUST00000115533.8	2739	17	208	-149	21	-7	multi-exon	FALSE	canonical	3	37	junction_1	23.3939595569027	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGATATGTGCTTGGA	NA	False	NA	-7	True	AATAAA	-25	NA	10082951	10024461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_10025089_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ENSMUSG00000031176.9_0	chrX	-	2101	5	FSM	ENSMUSG00000031176.9	ENSMUST00000033519.3	2176	5	72	3	72	-3	multi-exon	FALSE	canonical	3	232	junction_4	27.1523479647709	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATCTGGCTCTGGTTGA	NA	False	NA	-4	True	AATAAA	-18	NA	9529170	9520508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_9522303_9522618_9522697_9523279_9523404_9527218_9527261_9529107
ENSMUSG00000031176.9_1	chrX	-	902	1	ISM	ENSMUSG00000031176.9	ENSMUST00000033519.3	2176	5	7833	2	2187	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCTGGCTCTGGTTGAT	NA	False	NA	-3	True	AATAAA	-19	NA	9521409	9520507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_9520500_9521400
ENSMUSG00000031179.15_0	chrX	+	1614	4	FSM	ENSMUSG00000031179.15	ENSMUST00000033522.15	1649	4	1	34	1	-34	multi-exon	FALSE	canonical	2	4	junction_1	1.69967317119759	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAACAGAATAAAATTAA	NA	False	NA	NA	False	ATTAAA	-45	NA	63217154	63222350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_63217298_63219533_63219620_63220397_63220469_63221036
ENSMUSG00000031181.3_0	chrX	+	942	3	FSM	ENSMUSG00000031181.3	ENSMUST00000033524.3	854	3	-94	6	-94	-6	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGCATTGAGTTACTG	NA	False	NA	NA	False	NA	NA	NA	64091155	64092614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_64091683_64092028_64092158_64092328
ENSMUSG00000031196.14_0	chrX	-	1918	12	NIC	ENSMUSG00000031196.14	novel	7295	25	NA	NA	-23	15431	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	1.61603534860283	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTCTCTTGATATAGATA	2672	False	NA	NA	False	AATAAA	-28	NA	74426244	74366456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_74366750_74373963_74374058_74374993_74375166_74376106_74376366_74377556_74377779_74378301_74378419_74381825_74381895_74397646_74397860_74409607_74409731_74411704_74411827_74423092_74423183_74426100
ENSMUSG00000031197.12_1	chrX	+	1558	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	30	7	12	-7	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	1368	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGTTGCCTGACAATTT	NA	False	NA	7	True	ATTAAA	-13	NA	74557934	74578541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
ENSMUSG00000031198.5_0	chrX	+	826	5	FSM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	25	1711	2	420	multi-exon	FALSE	canonical	3	165	junction_1	30.589009464185	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTTTGGTATCTTGG	562	False	NA	NA	False	AATACA	-17	NA	74426029	74438354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915
ENSMUSG00000031198.5_4	chrX	+	387	1	ISM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	11960	1714	7257	417	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAAATTTTGGTATCT	8267	False	NA	NA	False	AATACA	-14	NA	74437964	74438351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_74438000_74438400
ENSMUSG00000031198.5_7	chrX	+	2366	1	Genic_Genomic	ENSMUSG00000031198.5	novel	NA	NA	NA	NA	7690	698	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTGCTGTGGTCATAG	8700	False	NA	5	True	NA	NA	NA	74438397	74440763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_74438400_74440800
ENSMUSG00000031200.17_0	chrX	-	2576	7	NIC	ENSMUSG00000031200.17	novel	980	6	NA	NA	5	5595	combination_of_known_splicesites	FALSE	canonical	3	22	junction_2	21.2243309016379	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTGGTTTGTTACTA	NA	False	NA	NA	False	AATAAA	-14	NA	74460189	74448454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_74448825_74453151_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620_74459820_74460143
ENSMUSG00000031200.17_1	chrX	-	5638	5	Fusion	ENSMUSG00000090110.9_ENSMUSG00000031200.17	novel	1592	5	NA	NA	1325	-3	multi-exon	FALSE	canonical	3	22	junction_2	23.8222584991432	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTGGTTTGTTACTA	NA	False	NA	NA	False	AATAAA	-14	NA	74458699	74448454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chrX_-_74448825_74453151_74454738_74454823_74454876_74454957_74455129_74455240
ENSMUSG00000031200.17_11	chrX	-	3897	1	NIC	ENSMUSG00000090110.9	novel	992	3	NA	NA	26	-7573	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	AAAACA	-36	NA	74460145	74456248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_74456200_74460100
ENSMUSG00000031200.17_2	chrX	-	2639	6	NIC	ENSMUSG00000031200.17	novel	980	6	NA	NA	91	5590	combination_of_known_splicesites	FALSE	canonical	3	22	junction_2	21.3410402745508	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTAAATTTTTGGTTTGT	NA	False	NA	NA	False	AATAAA	-43	NA	74459933	74448459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_74448825_74453151_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620
ENSMUSG00000031200.17_5	chrX	-	959	6	NIC	ENSMUSG00000090110.9	novel	507	4	NA	NA	10	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	19.8534631739654	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAATTTTTGGTTTGTTA	NA	False	NA	NA	False	AATAAA	-45	NA	74460161	74448457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_74448825_74454823_74454876_74454957_74455129_74455240_74455393_74459620_74459820_74460143
ENSMUSG00000031200.17_7	chrX	-	5733	4	ISM	ENSMUSG00000090110.9_ENSMUSG00000031200.17	ENSMUST00000033542.11	1592	5	3786	-3699	-2845	-1675	3prime_fragment	FALSE	canonical	3	22	junction_1	3.09120616516523	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGACCTTGTGCACCCAC	NA	False	NA	NA	False	NA	NA	NA	74456363	74450350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_74454738_74454823_74454876_74454957_74455129_74455240
ENSMUSG00000031200.17_8	chrX	-	1519	5	FSM	ENSMUSG00000031200.17	ENSMUST00000033542.11	1592	5	243	-170	118	170	multi-exon	FALSE	canonical	3	22	junction_1	5.33853912601566	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATAGGCTTTTGCGTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	74459906	74453879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620
ENSMUSG00000031200.17_9	chrX	-	1475	6	FSM	ENSMUSG00000031200.17	ENSMUST00000114081.2	980	6	8	-503	8	170	multi-exon	FALSE	canonical	3	22	junction_1	14.0370937162933	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATAGGCTTTTGCGTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	74460186	74453879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620_74459820_74460143
ENSMUSG00000031201.18_0	chrX	+	902	10	FSM	ENSMUSG00000031201.18	ENSMUST00000114074.8	2473	10	-9	1580	1	-604	multi-exon	FALSE	canonical	1	349	junction_4	251.832836972818	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAACAAAAAAATGTGGTA	NA	False	NA	NA	False	AATAAA	-8	NA	74460306	74493734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574
ENSMUSG00000031201.18_2	chrX	+	3061	11	FSM	ENSMUSG00000031201.18	ENSMUST00000033544.14	4310	11	73	1176	1	840	multi-exon	FALSE	canonical	1	239	junction_10	337.579694294547	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGACACTTTCATCATTC	NA	False	NA	NA	False	NA	NA	NA	74460306	74496431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
ENSMUSG00000031201.18_3	chrX	+	3058	11	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	1	840	at_least_one_novel_splicesite	FALSE	canonical	1	40	junction_10	382.100824390631	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGACACTTTCATCATTC	NA	False	NA	NA	False	NA	NA	NA	74460306	74496431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493749_74494289
ENSMUSG00000031202.6_0	chrX	-	3363	2	FSM	ENSMUSG00000031202.6	ENSMUST00000033545.6	3401	2	22	16	22	-16	multi-exon	FALSE	canonical	3	5	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGACTGAGAGATTCCATA	464	False	NA	NA	False	AGTAAA	-12	NA	74621815	74615667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_74618614_74621398
ENSMUSG00000031207.17_2	chrX	+	3818	13	FSM	ENSMUSG00000031207.17	ENSMUST00000117399.2	3842	13	24	0	9	0	multi-exon	FALSE	canonical	3	982	junction_10	94.3325971702724	2616	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGACTCAGTCTTTCTG	NA	False	NA	6	True	AATAAA	-16	NA	95139671	95212158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
ENSMUSG00000031209.15_1	chrX	+	4631	22	FSM	ENSMUSG00000031209.15	ENSMUST00000113838.8	4611	22	-22	2	-5	-2	multi-exon	FALSE	canonical	2	3	junction_1	3.14141380999441	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAATTTGGTGATTTTTGT	NA	False	NA	NA	False	ATTAAA	-24	NA	95499973	95618086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_95500222_95503180_95503376_95506496_95506698_95509415_95509661_95513550_95513764_95514338_95514522_95516417_95516673_95518983_95519153_95527636_95527774_95529832_95529965_95541453_95541663_95542592_95542744_95544112_95544326_95571115_95571330_95573006_95573147_95573899_95574032_95597448_95597556_95598440_95598667_95601115_95601256_95601644_95601808_95614585_95614631_95617173
ENSMUSG00000031209.15_2	chrX	+	4315	21	NIC	ENSMUSG00000031209.15	novel	4611	22	NA	NA	-16	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	3.74799946638203	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATACCAAATTTGGTGAT	NA	False	NA	NA	False	ATTAAA	-18	NA	95499962	95618080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_95500222_95506496_95506698_95509415_95509661_95513550_95513764_95514338_95514522_95516417_95516673_95518983_95519153_95527636_95527774_95529832_95529965_95541579_95541663_95542592_95542744_95544112_95544326_95571115_95571330_95573006_95573147_95573899_95574032_95597448_95597556_95598440_95598667_95601115_95601256_95601644_95601808_95614585_95614631_95617173
ENSMUSG00000031209.15_4	chrX	+	4417	21	NIC	ENSMUSG00000031209.15	novel	4611	22	NA	NA	-7	-6	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	3.17962261911693	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACCAAATTTGGTGATTT	NA	False	NA	NA	False	ATTAAA	-20	NA	95499988	95618082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_95500222_95506496_95506698_95509415_95509661_95513550_95513764_95514338_95514522_95516417_95516673_95518983_95519153_95527636_95527774_95529832_95529965_95541453_95541663_95542592_95542744_95544112_95544326_95571115_95571330_95573006_95573147_95573899_95574032_95597448_95597556_95598440_95598667_95601115_95601256_95601644_95601808_95614585_95614631_95617173
ENSMUSG00000031212.4_0	chrX	+	5396	5	FSM	ENSMUSG00000031212.4	ENSMUST00000033556.4	5379	5	-27	10	-27	-10	multi-exon	FALSE	canonical	0	0	junction_4	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAAGTAAATGAAAGC	326	False	NA	NA	False	AATAAA	-3	NA	96116174	96125700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_96116381_96119519_96120010_96120212_96120339_96120721_96120856_96121260
ENSMUSG00000031214.14_1	chrX	-	2401	16	NNC	ENSMUSG00000031214.14	novel	7170	25	NA	NA	-130119	619	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_15	5.49181208709839	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGAGGGGGT	NA	False	NA	NA	False	AATAAA	-24	NA	97752214	97601237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_97602012_97603191_97603234_97607235_97607287_97608321_97608488_97621989_97622314_97640633_97640782_97670519_97670680_97684513_97684620_97685356_97685416_97688515_97688601_97739604_97739680_97741892_97741956_97742461_97742496_97745470_97745550_97748635_97748728_97752071
ENSMUSG00000031214.14_3	chrX	-	3353	25	FSM	ENSMUSG00000031214.14	ENSMUST00000033560.9	7170	25	11	3806	11	168	multi-exon	FALSE	canonical	1	4	junction_23	4.90959944055181	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCTTGTTTCCGCAAAC	NA	False	NA	NA	False	AATAGA	-24	NA	97934580	97601688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_97602012_97603191_97603234_97607235_97607287_97608321_97608488_97621989_97622314_97640633_97640782_97670519_97670680_97684513_97684620_97685356_97685416_97688515_97688601_97739604_97739680_97741892_97741956_97742461_97742496_97745470_97745550_97748635_97748728_97753683_97753785_97755946_97756077_97757712_97757818_97769610_97769722_97775970_97776073_97807310_97807383_97824561_97824624_97846690_97846787_97933687_97933861_97933986
ENSMUSG00000031214.14_6	chrX	-	3587	26	FSM	ENSMUSG00000031214.14	ENSMUST00000113826.8	2794	26	-193	-600	11	600	multi-exon	FALSE	canonical	0	0	junction_25	5.66307337052947	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGAAAACATTTCTGTTA	NA	False	NA	NA	False	AATAAA	-5	NA	97934580	97601256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_97602012_97603191_97603234_97607235_97607287_97608321_97608488_97621989_97622314_97640633_97640782_97670519_97670680_97684513_97684620_97685356_97685416_97688515_97688601_97739604_97739680_97741892_97741956_97742461_97742496_97745470_97745550_97748635_97748728_97753683_97753785_97755946_97756077_97757712_97757818_97769610_97769722_97775970_97776073_97807310_97807383_97824561_97824624_97846690_97846787_97933687_97933861_97933986_97934106_97934303
ENSMUSG00000031216.14_0	chrX	+	4895	14	FSM	ENSMUSG00000031216.14	ENSMUST00000036606.14	4963	14	63	5	63	-5	multi-exon	FALSE	canonical	3	27	junction_1	6.60016137511158	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCACACTGGCTCTGGAGA	NA	False	NA	-2	True	AATAAA	-13	NA	98086249	98118329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_98086401_98104333_98104406_98106970_98107053_98107999_98108064_98109163_98110570_98111194_98111369_98112179_98112340_98112793_98112993_98113352_98113564_98113827_98113943_98114879_98115105_98116039_98116258_98116359_98116537_98116688
ENSMUSG00000031216.14_1	chrX	+	5077	15	NNC	ENSMUSG00000031216.14	novel	4963	14	NA	NA	62	-5	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	14.1452018258446	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCACACTGGCTCTGGAGA	NA	False	NA	-2	True	AATAAA	-13	NA	98086248	98118329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_98086401_98092386_98092568_98104333_98104406_98106970_98107053_98107999_98108064_98109163_98110570_98111194_98111369_98112179_98112340_98112793_98112993_98113352_98113564_98113827_98113943_98114879_98115105_98116039_98116258_98116359_98116537_98116688
ENSMUSG00000031216.14_10	chrX	+	3632	10	ISM	ENSMUSG00000031216.14	ENSMUST00000036606.14	4963	14	23871	5	-2156	-5	3prime_fragment	FALSE	canonical	3	36	junction_4	5.59761854124889	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCACACTGGCTCTGGAGA	NA	False	NA	-2	True	AATAAA	-13	NA	98110057	98118329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_98110570_98111194_98111369_98112179_98112340_98112793_98112993_98113352_98113564_98113827_98113943_98114879_98115105_98116039_98116258_98116359_98116537_98116688
ENSMUSG00000031216.14_6	chrX	+	4823	13	NIC	ENSMUSG00000031216.14	novel	4963	14	NA	NA	53	-5	combination_of_known_splicesites	TRUE	canonical	0	0	junction_2	13.6950923894494	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCACACTGGCTCTGGAGA	NA	False	NA	-2	True	AATAAA	-13	NA	98086239	98118329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_98086401_98104333_98104406_98107999_98108064_98109163_98110570_98111194_98111369_98112179_98112340_98112793_98112993_98113352_98113564_98113827_98113943_98114879_98115105_98116039_98116258_98116359_98116537_98116688
ENSMUSG00000031217.9_0	chrX	+	3232	5	FSM	ENSMUSG00000031217.9	ENSMUST00000052839.7	3258	5	-10	36	-10	-36	multi-exon	FALSE	canonical	3	33	junction_1	5.76085931090146	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTTGCTTTTTTCTTA	NA	False	NA	16	True	TATAAA	-13	NA	98179725	98192561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_98180620_98188897_98189176_98190083_98190177_98190357_98190484_98190720
ENSMUSG00000031217.9_5	chrX	+	1454	1	ISM	ENSMUSG00000031217.9	ENSMUST00000052839.7	3258	5	11393	15	9392	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATGAGAACTAAAA	NA	False	NA	37	True	TATAAA	-34	NA	98191128	98192582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_98191100_98192600
ENSMUSG00000031221.8_0	chrX	+	1328	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	64	126	0	-126	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGTGGGTATCCGCTG	NA	False	NA	24	True	AATAAA	-27	NA	99537960	99559605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
ENSMUSG00000031221.8_3	chrX	+	282	1	ISM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	21427	126	21363	-126	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGTGGGTATCCGCTG	1982	False	NA	24	True	AATAAA	-27	NA	99559323	99559605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_99559300_99559600
ENSMUSG00000031224.7_0	chrX	-	2290	1	FSM	ENSMUSG00000031224.7	ENSMUST00000033575.7	2316	1	23	3	23	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCCATGCTTATGTGAT	NA	False	NA	NA	False	AATAAA	-14	NA	103900850	103898560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_103898600_103900800
ENSMUSG00000031226.14_0	chrX	+	919	6	FSM	ENSMUSG00000031226.14	ENSMUST00000033577.11	2638	6	19	1700	0	326	multi-exon	FALSE	canonical	3	1180	junction_1	116.642359372571	489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAATGACTGATCTTAGAA	NA	False	NA	22	True	AATAAA	-19	NA	104123380	104127092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621
ENSMUSG00000031227.9_0	chrX	+	3520	1	FSM	ENSMUSG00000031227.9	ENSMUST00000033578.7	3550	1	7	23	7	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCAAATAATGCTAATCC	NA	False	NA	NA	False	AATAAA	-9	NA	104163990	104167510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_104164000_104167500
ENSMUSG00000031229.17_0	chrX	-	1848	1	ISM	ENSMUSG00000031229.17	ENSMUST00000113573.8	10275	35	129936	5	2583	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTGTTGTGCTCTTT	NA	False	NA	-7	True	ATTAAA	-14	NA	104843073	104841225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_104841200_104843100
ENSMUSG00000031229.17_134	chrX	-	6410	10	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	3	69	junction_9	64.4373559319916	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATTTTCTTGTTGAAG	NA	False	NA	-9	True	AATAAA	-8	NA	104972951	104909159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
ENSMUSG00000031229.17_138	chrX	-	4468	2	FSM	ENSMUSG00000031229.17	ENSMUST00000200471.2	3124	2	-1352	8	-1062	-8	multi-exon	FALSE	canonical	3	261	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATTTTCTTGTTGAAG	NA	False	NA	-9	True	AATAAA	-8	NA	104920263	104909159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_104911530_104918165
ENSMUSG00000031229.17_19	chrX	-	4219	11	ISM	ENSMUSG00000031229.17	ENSMUST00000113573.8	10275	35	98418	5	-1339	-5	3prime_fragment	FALSE	canonical	3	199	junction_10	22.4207493184327	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTGTTGTGCTCTTT	NA	False	NA	-7	True	ATTAAA	-14	NA	104874591	104841225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453
ENSMUSG00000031229.17_2	chrX	-	7427	27	ISM	ENSMUSG00000031229.17	ENSMUST00000113573.8	10275	35	53728	7	-80	-7	3prime_fragment	FALSE	canonical	3	146	junction_21	31.0765422672784	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAAATGTGTTGTGCTCT	NA	False	NA	-9	True	ATTAAA	-12	NA	104919281	104841227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165
ENSMUSG00000031231.5_0	chrX	+	464	3	FSM	ENSMUSG00000031231.5	ENSMUST00000033582.5	1001	3	44	493	28	-1	multi-exon	FALSE	canonical	3	7724	junction_1	851.5	1133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTAGGCTTTGTTTTTTT	NA	False	NA	11	True	AATAAA	-23	NA	105059349	105065563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_105059477_105063184_105063310_105065351
ENSMUSG00000031231.5_11	chrX	+	283	2	FSM	ENSMUSG00000031231.5	ENSMUST00000155377.2	526	2	235	8	235	-8	multi-exon	FALSE	canonical	3	9427	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTCATTCTAGGCTTTG	NA	False	NA	4	True	AATAAA	-16	NA	105063231	105065556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_105063310_105065351
ENSMUSG00000031232.18_0	chrX	-	2201	1	ISM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	41611	4	41492	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTACATGGTTTTTTTA	NA	False	NA	NA	False	AATAAA	-12	NA	105013894	105011693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_105011700_105013900
ENSMUSG00000031232.18_1	chrX	-	4423	10	FSM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	93	8	-20	-8	multi-exon	FALSE	canonical	3	195	junction_8	15.5404688745065	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTAAATTACATGGTTTT	NA	False	NA	NA	False	AATAAA	-8	NA	105055412	105011697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
ENSMUSG00000031232.18_3	chrX	-	4019	11	FSM	ENSMUSG00000031232.18	ENSMUST00000033583.14	4115	11	93	3	-20	-3	multi-exon	FALSE	canonical	3	21	junction_1	64.6371410258839	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACATGGTTTTTTTAT	NA	False	NA	NA	False	AATAAA	-13	NA	105055412	105011692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_105014633_105015041_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
ENSMUSG00000031239.6_0	chrX	-	1625	6	FSM	ENSMUSG00000031239.6	ENSMUST00000033591.6	1744	6	18	101	18	-101	multi-exon	FALSE	canonical	3	44	junction_1	8.06473806146238	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATGTTTTATTTTCATC	NA	False	NA	NA	False	AATAAA	-14	NA	106446964	106440805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_106441586_106441701_106441853_106442376_106442488_106442701_106442900_106443172_106443305_106446711
ENSMUSG00000031239.6_1	chrX	-	439	1	ISM	ENSMUSG00000031239.6	ENSMUST00000033591.6	1744	6	5738	101	5738	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATGTTTTATTTTCATC	NA	False	NA	NA	False	AATAAA	-14	NA	106441244	106440805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_106440800_106441200
ENSMUSG00000031242.8_0	chrX	-	3057	8	FSM	ENSMUSG00000031242.8	ENSMUST00000120722.2	5842	8	59	2726	59	2360	multi-exon	TRUE	canonical	3	41	junction_6	7.21958786771044	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATTACTACCACTTAGC	NA	False	NA	NA	False	AATAAA	-11	NA	106859881	106829082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_106831460_106831871_106831945_106834341_106834386_106836504_106836613_106836698_106836768_106837113_106837261_106851397_106851496_106859740
ENSMUSG00000031242.8_1	chrX	-	2834	1	ISM	ENSMUSG00000031242.8	ENSMUST00000120722.2	5842	8	30735	15	8550	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATTATTTGAAATTGGC	NA	False	NA	NA	False	AATAAA	-10	NA	106829205	106826371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_106826400_106829200
ENSMUSG00000031242.8_2	chrX	-	5431	6	FSM	ENSMUSG00000031242.8	ENSMUST00000191183.2	953	6	593	-5071	593	-15	multi-exon	FALSE	canonical	3	43	junction_5	6.6932802122726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATTATTTGAAATTGGC	3414	False	NA	NA	False	AATAAA	-10	NA	106837162	106826371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_106831460_106831871_106831945_106834341_106834386_106836504_106836613_106836698_106836768_106837113
ENSMUSG00000031245.9_0	chrX	-	1916	6	FSM	ENSMUSG00000031245.9	ENSMUST00000033597.9	1934	6	10	8	10	-8	multi-exon	FALSE	canonical	0	0	junction_3	41.3424721079908	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGATTATGGTTTGCA	NA	False	NA	-7	True	AATAAA	-11	NA	108057000	108048147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_108049678_108051767_108051903_108054159_108054214_108054462_108054493_108055027_108055052_108056857
ENSMUSG00000031246.15_0	chrX	+	2753	4	FSM	ENSMUSG00000031246.15	ENSMUST00000033598.9	2882	4	124	5	-20	-5	multi-exon	FALSE	canonical	3	20	junction_1	2.86744175568088	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATGTTTGATTACTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	108139094	108206072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_108139244_108193520_108193707_108197911_108197993_108203735
ENSMUSG00000031246.15_3	chrX	+	2510	3	ISM	ENSMUSG00000031246.15	ENSMUST00000033598.9	2882	4	54648	1	36041	-1	3prime_fragment	FALSE	canonical	3	24	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTGATTACTTTTAATT	NA	False	NA	NA	False	AATAAA	-17	NA	108193618	108206076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_108193707_108197911_108197993_108203735
ENSMUSG00000031246.15_4	chrX	+	2095	1	ISM	ENSMUSG00000031246.15	ENSMUST00000033598.9	2882	4	65002	10	46395	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGATTCATGTTTGATTA	NA	False	NA	NA	False	AATAAA	-8	NA	108203972	108206067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_108204000_108206100
ENSMUSG00000031256.12_0	chrX	+	2597	11	FSM	ENSMUSG00000031256.12	ENSMUST00000113286.8	2717	11	119	1	0	-1	multi-exon	FALSE	canonical	3	451	junction_8	82.5556781814552	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCAAGTTTTGCTTTTTA	NA	False	NA	3	True	AATAAA	-18	NA	132960082	132976611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261
ENSMUSG00000031256.12_1	chrX	+	4278	14	FSM	ENSMUSG00000031256.12	ENSMUST00000113287.8	3661	14	151	-768	4	-5	multi-exon	FALSE	canonical	3	157	junction_8	147.051615138335	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTCACCCTACTTAGAA	NA	False	NA	7	True	AATAAA	-7	NA	132960086	132987563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973962_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
ENSMUSG00000031256.12_2	chrX	+	4358	14	FSM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	139	5	2	-5	multi-exon	FALSE	canonical	3	451	junction_8	78.010695670871	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTCACCCTACTTAGAA	NA	False	NA	7	True	AATAAA	-7	NA	132960084	132987563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
ENSMUSG00000031256.12_45	chrX	+	1953	1	ISM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	25665	5	18601	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTCACCCTACTTAGAA	NA	False	NA	7	True	AATAAA	-7	NA	132985610	132987563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_132985600_132987600
ENSMUSG00000031258.5_0	chrX	-	2596	3	FSM	ENSMUSG00000031258.5	ENSMUST00000033611.5	2876	3	283	-3	283	3	multi-exon	FALSE	canonical	0	0	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCCTGGGTATTTTAT	NA	False	NA	NA	False	AATAAA	-22	NA	133062394	133049788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133052046_133057961_133058231_133062324
ENSMUSG00000031262.13_0	chrX	+	3086	22	FSM	ENSMUSG00000031262.13	ENSMUST00000101251.8	3085	22	-1	0	-1	0	multi-exon	FALSE	canonical	3	75	junction_1	51.4515821537341	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	3	True	AATAAA	-14	NA	133208902	133263385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_133208978_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ENSMUSG00000031262.13_1	chrX	+	3135	23	FSM	ENSMUSG00000031262.13	ENSMUST00000081064.12	3227	23	89	3	18	0	multi-exon	FALSE	canonical	3	156	junction_9	42.2862392872416	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	3	True	AATAAA	-14	NA	133208921	133263385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_133208978_133209314_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ENSMUSG00000031262.13_4	chrX	+	3576	21	NIC	ENSMUSG00000031262.13	novel	3085	22	NA	NA	7	0	intron_retention	FALSE	canonical	3	156	junction_7	44.2429655425583	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	3	True	AATAAA	-14	NA	133208910	133263385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ENSMUSG00000031262.13_7	chrX	+	3238	22	NIC	ENSMUSG00000031262.13	novel	3085	22	NA	NA	8	0	intron_retention	FALSE	canonical	3	156	junction_8	43.2155384837434	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	3	True	AATAAA	-14	NA	133208911	133263385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_133208978_133209314_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ENSMUSG00000031264.14_0	chrX	-	2531	19	FSM	ENSMUSG00000031264.14	ENSMUST00000033617.13	2540	19	2	7	2	-7	multi-exon	FALSE	canonical	1	1	junction_10	2.60104442460436	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGTTATCTATTTTAAT	NA	False	NA	NA	False	AATAAA	-9	NA	133483887	133443091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133443557_133446230_133446389_133447460_133447580_133448310_133448376_133450163_133450381_133451055_133451228_133451950_133452026_133455147_133455276_133455437_133455518_133456297_133456353_133457086_133457150_133457536_133457725_133459435_133459504_133459946_133460076_133466345_133466428_133469653_133469723_133473957_133474057_133474665_133474837_133483759
ENSMUSG00000031264.14_1	chrX	-	2533	19	NIC	ENSMUSG00000031264.14	novel	2540	19	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_10	2.65099562009781	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTATTTTAATTTATTAC	NA	False	NA	NA	False	AATAAA	-16	NA	133483203	133443084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_133443557_133446230_133446389_133447460_133447580_133448310_133448376_133450163_133450381_133451055_133451228_133451950_133452026_133455147_133455276_133455437_133455518_133456297_133456353_133457086_133457150_133457536_133457725_133459435_133459504_133459946_133460076_133466345_133466428_133469653_133469723_133473957_133474057_133474665_133474837_133483080
ENSMUSG00000031266.8_1	chrX	-	1445	1	ISM	ENSMUSG00000031266.8	ENSMUST00000033621.8	3172	7	11514	18	10689	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCTCTACACTGCGTT	NA	False	NA	NA	False	NA	NA	NA	133490360	133488915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_133488900_133490400
ENSMUSG00000031266.8_3	chrX	-	1381	7	FSM	ENSMUSG00000031266.8	ENSMUST00000239113.2	3015	7	52	1582	52	-1582	multi-exon	FALSE	canonical	3	153	junction_5	18.580904176062	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCTGCTTTTCAACATA	NA	False	NA	-19	True	AATAAA	-23	NA	133501702	133490516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133490877_133491694_133491893_133492813_133492976_133494382_133494475_133495928_133496107_133497023_133497199_133501486
ENSMUSG00000031278.13_0	chrX	-	2387	1	ISM	ENSMUSG00000031278.13	ENSMUST00000112907.8	5137	16	69961	4	7642	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGCCAGTTTGTTTTTTC	NA	False	NA	-7	True	AATAAA	-14	NA	141103379	141100992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_141101000_141103400
ENSMUSG00000031278.13_1	chrX	-	4946	16	FSM	ENSMUSG00000031278.13	ENSMUST00000112904.8	4959	16	8	5	8	-5	multi-exon	FALSE	canonical	3	35	junction_14	37.5140862432589	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGCCAGTTTGTTTTTT	NA	False	NA	-8	True	AATAAA	-13	NA	141173492	141100993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134615_141143382_141143433_141173300
ENSMUSG00000031278.13_2	chrX	-	5237	16	FSM	ENSMUSG00000031278.13	ENSMUST00000033634.5	5280	16	38	5	7	-5	multi-exon	FALSE	canonical	3	129	junction_14	18.9168942717585	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGCCAGTTTGTTTTTT	NA	False	NA	-8	True	AATAAA	-13	NA	141173493	141100993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134905_141143382_141143433_141173300
ENSMUSG00000031278.13_3	chrX	-	4932	16	FSM	ENSMUSG00000031278.13	ENSMUST00000112903.8	4956	16	19	5	19	-5	multi-exon	TRUE	canonical	1	1	junction_14	45.3617557959223	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGCCAGTTTGTTTTTT	NA	False	NA	-8	True	AATAAA	-13	NA	141173481	141100993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134612_141143382_141143433_141173300
ENSMUSG00000031286.7_0	chr3	-	2668	2	FSM	ENSMUSG00000031286.7	ENSMUST00000033643.6	2732	2	54	10	54	-10	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGAAATCCCTTTGTC	NA	False	NA	NA	False	AATAAA	-8	NA	85794769	85777165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_85779498_85794433
ENSMUSG00000031290.15_4	chrX	-	4578	21	FSM	ENSMUSG00000031290.15	ENSMUST00000112819.9	4892	21	314	0	314	0	multi-exon	TRUE	canonical	0	0	junction_17	2.22710574513201	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCTAAGCCTGGAA	NA	False	NA	NA	False	GATAAA	-9	NA	146336732	146253382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_146256073_146263252_146263331_146263463_146263602_146263779_146263893_146264610_146264669_146267749_146267801_146271229_146271275_146274830_146274948_146275034_146275084_146279762_146279829_146286379_146286488_146291654_146291714_146291814_146291913_146292105_146292218_146292700_146292789_146295048_146295183_146302033_146302171_146302255_146302362_146305508_146305636_146308269_146308415_146336673
ENSMUSG00000031290.15_6	chrX	-	2054	1	ISM	ENSMUSG00000031290.15	ENSMUST00000152838.8	3941	15	39720	14	25723	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAAAATCTAAGCCTGG	NA	False	NA	NA	False	GATAAA	-7	NA	146255438	146253384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_146253400_146255400
ENSMUSG00000031292.15_1	chrX	-	3303	19	FSM	ENSMUSG00000031292.15	ENSMUST00000087104.11	3269	19	38	-72	38	72	multi-exon	FALSE	canonical	0	0	junction_3	1.20185042515466	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGATATACTACTATGAA	NA	False	NA	NA	False	AGTAAA	-25	NA	159777662	159567231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_159567579_159591470_159591688_159594592_159594713_159599887_159599988_159606970_159607095_159612538_159612645_159612916_159613019_159616863_159617831_159623290_159623443_159629932_159630014_159635136_159635327_159639350_159639442_159641795_159641856_159643929_159644051_159648912_159649050_159659518_159659565_159707447_159707483_159711420_159711652_159777586
ENSMUSG00000031292.15_3	chrX	-	4630	1	ISM	ENSMUSG00000031292.15	ENSMUST00000198931.2	9796	17	122234	233	10928	-233	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGACTGCCGGGCTTT	NA	False	NA	-23	True	AATAAA	-20	NA	159589250	159584620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_159584600_159589200
ENSMUSG00000031295.14_14	chrX	+	3930	34	FSM	ENSMUSG00000031295.14	ENSMUST00000112377.8	3947	34	13	4	7	-4	multi-exon	FALSE	canonical	3	9	junction_1	19.1295904422098	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCTGTCATTTGTAGAC	NA	False	NA	3	True	CATAAA	-14	NA	159285174	159374133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_159285289_159285742_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
ENSMUSG00000031295.14_16	chrX	+	4039	33	FSM	ENSMUSG00000031295.14	ENSMUST00000033652.9	4133	33	92	2	61	-2	multi-exon	FALSE	canonical	3	71	junction_12	13.3855098894289	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGTCATTTGTAGACTC	NA	False	NA	5	True	CATAAA	-16	NA	159285521	159374135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
ENSMUSG00000031295.14_3	chrX	+	3931	34	NIC	ENSMUSG00000031295.14	novel	3947	34	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	18.7602436052563	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTGTCATTTGTAGACT	NA	False	NA	4	True	CATAAA	-15	NA	159285168	159374134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_159285289_159285748_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
ENSMUSG00000031295.14_34	chrX	+	3662	28	ISM	ENSMUSG00000031295.14	ENSMUST00000033652.9	4133	33	28213	2	-247	-2	3prime_fragment	FALSE	canonical	3	71	junction_7	14.1759470933872	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGTCATTTGTAGACTC	NA	False	NA	5	True	CATAAA	-16	NA	159313642	159374135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
ENSMUSG00000031295.14_9	chrX	+	3963	34	NNC	ENSMUSG00000031295.14	novel	3947	34	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	19.0057262648391	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCTGTCATTTGTAGAC	NA	False	NA	3	True	CATAAA	-14	NA	159285168	159374133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_159285289_159285715_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
ENSMUSG00000031297.15_0	chrX	-	2231	12	FSM	ENSMUSG00000031297.15	ENSMUST00000073927.5	2232	12	1	0	1	0	multi-exon	FALSE	canonical	3	1250	junction_11	82.5987012884915	1498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCAAAAAACC	NA	False	NA	NA	False	ATTAAA	-11	NA	100128977	100122827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ENSMUSG00000031297.15_24	chrX	-	2028	11	ISM	ENSMUSG00000031297.15	ENSMUST00000101362.8	2371	13	1181	1	10	0	3prime_fragment	FALSE	canonical	3	1326	junction_4	61.814318729563	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCAAAAAACC	NA	False	NA	NA	False	ATTAAA	-11	NA	100127777	100122827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476
ENSMUSG00000031297.15_8	chrX	-	2389	13	FSM	ENSMUSG00000031297.15	ENSMUST00000101362.8	2371	13	-19	1	1	0	multi-exon	FALSE	canonical	3	84	junction_12	497.596780089618	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCAAAAAACC	NA	False	NA	NA	False	ATTAAA	-11	NA	100128977	100122827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100128585_100128877
ENSMUSG00000031298.16_0	chrX	+	4718	26	FSM	ENSMUSG00000031298.16	ENSMUST00000112404.9	4601	26	-119	2	-84	-2	multi-exon	TRUE	canonical	0	0	junction_4	3.22391066873758	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCTTTAAGTTTGGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	159173601	159281064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_159173746_159213345_159213391_159221190_159221310_159244338_159244378_159246323_159246366_159248573_159248628_159251887_159251944_159252763_159252820_159254751_159254792_159255307_159255346_159257699_159257795_159258486_159258554_159260044_159260437_159261980_159262144_159263222_159263380_159264542_159264687_159265284_159265408_159266078_159266125_159266229_159266334_159267135_159267258_159268639_159268909_159270661_159270762_159271679_159271964_159274393_159274496_159275595_159275749_159279300
ENSMUSG00000031298.16_2	chrX	+	2197	4	ISM	ENSMUSG00000031298.16	ENSMUST00000112400.8	4682	28	98061	6	61494	-6	3prime_fragment	FALSE	canonical	2	6	junction_2	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGTCCTTTAAGTTTG	NA	False	NA	NA	False	AATAAA	-12	NA	159271781	159281060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_159271964_159274393_159274496_159275595_159275749_159279300
ENSMUSG00000031298.16_4	chrX	+	4611	28	FSM	ENSMUSG00000031298.16	ENSMUST00000112400.8	4682	28	-55	126	-20	-126	multi-exon	FALSE	canonical	0	0	junction_5	3.36201650901043	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCTGTTTCTGTGTGTG	NA	False	NA	NA	False	AATAAA	-29	NA	159173665	159280940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_159173746_159213345_159213391_159221190_159221310_159239000_159239034_159241830_159241879_159244338_159244378_159246323_159246366_159248573_159248628_159251887_159251944_159252763_159252820_159254751_159254792_159255307_159255346_159257699_159257795_159258486_159258554_159260044_159260437_159261980_159262144_159263222_159263380_159264542_159264687_159265284_159265408_159266078_159266125_159266229_159266334_159267135_159267258_159268639_159268909_159270661_159270762_159271679_159271964_159274393_159274496_159275595_159275749_159279300
ENSMUSG00000031298.16_6	chrX	+	4661	25	NIC	ENSMUSG00000031298.16	novel	4601	26	NA	NA	-73	-6	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	2.94126531728552	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGTCCTTTAAGTTTG	NA	False	NA	NA	False	AATAAA	-12	NA	159173612	159281060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_159173746_159213345_159213391_159221190_159221310_159244338_159244378_159248573_159248628_159251887_159251944_159252763_159252820_159254751_159254792_159255307_159255346_159257699_159257795_159258486_159258554_159260044_159260437_159261980_159262144_159263222_159263380_159264542_159264687_159265284_159265408_159266078_159266125_159266229_159266334_159267135_159267258_159268639_159268909_159270661_159270762_159271679_159271964_159274393_159274496_159275595_159275749_159279300
ENSMUSG00000031299.11_0	chrX	-	2784	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	51	13	-6	-13	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	1837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTACTTTTACAGTTCT	NA	False	NA	-14	True	ATTAAA	-11	NA	158921358	158905217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ENSMUSG00000031299.11_6	chrX	-	1363	1	ISM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	14831	11	5383	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTACTTTTACAGTTCTTG	NA	False	NA	-12	True	ATTAAA	-13	NA	158906578	158905215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_158905200_158906600
ENSMUSG00000031303.9_0	chrX	+	4565	29	FSM	ENSMUSG00000031303.9	ENSMUST00000033665.9	4348	29	-224	7	-224	-7	multi-exon	FALSE	canonical	3	16	junction_1	11.3624762858691	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGACTGAAGTTCCCTT	NA	False	NA	6	True	ATTAAA	-14	NA	158771204	158906340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_158771802_158784900_158785041_158787158_158787183_158823985_158824180_158827056_158827226_158829612_158829720_158855833_158856005_158858590_158858704_158859124_158859285_158862909_158863061_158864780_158864889_158866859_158866910_158869313_158869410_158872799_158872888_158874576_158874711_158877291_158877420_158880972_158881104_158881316_158881423_158895401_158895560_158898054_158898239_158898880_158899047_158899514_158899690_158900650_158900837_158901536_158901643_158902505_158902720_158904641_158904755_158905357_158905459_158905529_158905607_158905922
ENSMUSG00000031303.9_1	chrX	+	5209	28	NIC	ENSMUSG00000031303.9	novel	4348	29	NA	NA	-226	-7	intron_retention	FALSE	canonical	3	16	junction_1	11.5608962017507	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGACTGAAGTTCCCTT	NA	False	NA	6	True	ATTAAA	-14	NA	158771202	158906340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_158771802_158784900_158785041_158787158_158787183_158823985_158824180_158827056_158827226_158829612_158829720_158855833_158856005_158858590_158858704_158859124_158859285_158862909_158863061_158864780_158864889_158866859_158866910_158869313_158869410_158872799_158872888_158874576_158874711_158877291_158877420_158880972_158881104_158881316_158881423_158895401_158895560_158898054_158899047_158899514_158899690_158900650_158900837_158901536_158901643_158902505_158902720_158904641_158904755_158905357_158905459_158905529_158905607_158905922
ENSMUSG00000031303.9_20	chrX	+	2352	15	ISM	ENSMUSG00000031303.9	ENSMUST00000033665.9	4348	29	103193	7	103193	-7	3prime_fragment	FALSE	canonical	3	28	junction_7	13.3186994523505	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGACTGAAGTTCCCTT	4011	False	NA	6	True	ATTAAA	-14	NA	158874621	158906340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_158874711_158877291_158877420_158880972_158881104_158881316_158881423_158895401_158895560_158898054_158898239_158898880_158899047_158899514_158899690_158900650_158900837_158901536_158901643_158902505_158902720_158904641_158904755_158905357_158905459_158905529_158905607_158905922
ENSMUSG00000031304.19_0	chrX	-	1599	8	FSM	ENSMUSG00000031304.19	ENSMUST00000033664.14	1670	8	56	15	-9	-15	multi-exon	FALSE	canonical	3	20	junction_5	5.61702950038214	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATCATCAAGAATGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	100311805	100307998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100308644_100308981_100309049_100309235_100309333_100309786_100309950_100310583_100310727_100310916_100311102_100311316_100311471_100311660
ENSMUSG00000031304.19_1	chrX	-	1529	7	NIC	ENSMUSG00000031304.19	novel	1670	8	NA	NA	29	-15	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	12.0611866009204	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATCATCAAGAATGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	100311832	100307998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_100308644_100308981_100309049_100309786_100309950_100310583_100310727_100310916_100311102_100311316_100311471_100311660
ENSMUSG00000031304.19_2	chrX	-	1306	3	FSM	ENSMUSG00000031304.19	ENSMUST00000127538.2	558	3	-59	-689	-27	159	multi-exon	FALSE	canonical	3	28	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100311823	100310112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100311102_100311316_100311471_100311660
ENSMUSG00000031309.16_0	chrX	+	2752	22	NNC	ENSMUSG00000031309.16	novel	755	2	NA	NA	-111	294	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	12.7339779727836	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCACCTGGATTAACAGT	NA	False	NA	NA	False	ATTAAA	-12	NA	158038666	158147030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_158038716_158068261_158068319_158094459_158094577_158100916_158100999_158109836_158109918_158110767_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
ENSMUSG00000031309.16_10	chrX	+	2057	17	ISM	ENSMUSG00000031309.16	ENSMUST00000033671.13	7244	22	71961	4472	24538	32	3prime_fragment	FALSE	canonical	3	27	junction_2	11.1227174624729	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCATATAGCATTATTTT	NA	False	NA	6	True	AATAAA	-9	NA	158110814	158146768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
ENSMUSG00000031309.16_13	chrX	+	5501	6	ISM	ENSMUSG00000031309.16	ENSMUST00000033671.13	7244	22	91186	10	-15277	-10	3prime_fragment	FALSE	canonical	3	35	junction_2	9.57078889120432	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAAGCATGTTCGTTTC	NA	False	NA	NA	False	AATAAA	-6	NA	158130039	158151230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
ENSMUSG00000031309.16_14	chrX	+	4838	5	ISM	ENSMUSG00000031309.16	ENSMUST00000033671.13	7244	22	93471	465	-12992	-465	3prime_fragment	FALSE	canonical	3	35	junction_1	10.7004672795163	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTATTTTGCATTTTTGGC	NA	False	NA	NA	False	AATAAA	-27	NA	158132324	158150775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
ENSMUSG00000031309.16_17	chrX	+	2535	1	ISM	ENSMUSG00000031309.16	ENSMUST00000033671.13	7244	22	109846	6	3298	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCATGTTCGTTTCTTTT	NA	False	NA	NA	False	AATAAA	-10	NA	158148699	158151234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_158148700_158151200
ENSMUSG00000031309.16_19	chrX	+	3205	24	NIC	ENSMUSG00000031309.16	novel	7244	22	NA	NA	-38	296	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	16.3806331311381	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACCTGGATTAACAGTAT	NA	False	NA	NA	False	ATTAAA	-14	NA	158038815	158147032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_158039185_158061105_158061200_158062162_158062200_158068261_158068319_158094459_158094577_158100916_158100999_158109836_158109918_158110767_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
ENSMUSG00000031309.16_4	chrX	+	2746	22	FSM	ENSMUSG00000031309.16	ENSMUST00000033671.13	7244	22	33	4465	33	39	multi-exon	FALSE	canonical	3	10	junction_1	12.5162932360936	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCATTATTTTTATAGGA	NA	False	NA	13	True	AATAAA	-16	NA	158038886	158146775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_158039185_158068261_158068319_158094459_158094577_158100916_158100999_158109836_158109918_158110767_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
ENSMUSG00000031309.16_9	chrX	+	2133	18	ISM	ENSMUSG00000031309.16	ENSMUST00000033671.13	7244	22	70987	4520	23564	-16	3prime_fragment	FALSE	canonical	3	26	junction_1	11.4044852464732	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATGAACACATGAATACCA	NA	False	NA	-42	True	AATAAA	-3	NA	158109840	158146720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_158109918_158110767_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
ENSMUSG00000031310.17_10	chrX	-	5383	25	NIC	ENSMUSG00000031310.17	novel	6057	25	NA	NA	6	-1	combination_of_known_junctions	FALSE	canonical	2	22	junction_24	26.5045855571363	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTGCTTTCTCTGGGGG	NA	False	NA	-3	True	AATAAA	-13	NA	100463964	100447990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463933
ENSMUSG00000031310.17_20	chrX	-	794	1	ISM	ENSMUSG00000031310.17	ENSMUST00000117901.8	5178	24	14613	8	4549	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGTTCTTTGCTTTCT	NA	False	NA	-10	True	AATAAA	-6	NA	100448791	100447997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_100448000_100448800
ENSMUSG00000031310.17_4	chrX	-	5470	25	NIC	ENSMUSG00000031310.17	novel	5564	25	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	3	54	junction_18	23.4366388730694	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTGCTTTCTCTGGGGG	NA	False	NA	-3	True	AATAAA	-13	NA	100463421	100447990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
ENSMUSG00000031310.17_6	chrX	-	5469	25	FSM	ENSMUSG00000031310.17	ENSMUST00000121520.8	5564	25	87	8	2	-8	multi-exon	FALSE	canonical	3	54	junction_18	23.7530334320108	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGTTCTTTGCTTTCT	NA	False	NA	-10	True	AATAAA	-6	NA	100463433	100447997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460582_100460892_100460937_100461878_100462559_100463303
ENSMUSG00000031310.17_62	chrX	-	1860	7	ISM	ENSMUSG00000031310.17	ENSMUST00000121520.8	5564	25	92	10552	7	2	5prime_fragment	FALSE	canonical	3	74	junction_4	23.7065391822594	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCAGCCTCAGCCTCTC	NA	False	NA	-7	True	NA	NA	NA	100463428	100458541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460582_100460892_100460937_100461878_100462559_100463303
ENSMUSG00000031310.17_68	chrX	-	1826	7	FSM	ENSMUSG00000031310.17	ENSMUST00000120201.8	1859	7	25	8	14	0	multi-exon	FALSE	canonical	3	84	junction_4	20.0637871688163	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACCCAGCCTCAGCCTC	NA	False	NA	-9	True	NA	NA	NA	100463390	100458543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
ENSMUSG00000031311.18_0	chrX	+	2421	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	137	4	-43	-4	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	4782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	16	True	ATTAAA	-17	NA	100473297	100492193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
ENSMUSG00000031311.18_3	chrX	+	2450	12	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-45	-4	combination_of_known_junctions	FALSE	canonical	3	146	junction_9	1051.63693731909	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	16	True	ATTAAA	-17	NA	100473295	100492193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488424_100488900_100488941_100489724_100489835_100491199
ENSMUSG00000031311.18_4	chrX	+	2418	12	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-43	-4	combination_of_known_junctions	FALSE	canonical	3	397	junction_1	981.218107867263	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	16	True	ATTAAA	-17	NA	100473297	100492193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100473369_100474101_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
ENSMUSG00000031314.19_114	chrX	+	988	1	ISM	ENSMUSG00000031314.19	ENSMUST00000118878.8	7210	38	67303	10	9490	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAATAGAATCGAGAGTGA	NA	False	NA	NA	False	AATAAA	-14	NA	100643642	100644630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_100643600_100644600
ENSMUSG00000031314.19_3	chrX	+	7203	39	NNC	ENSMUSG00000031314.19	novel	5954	39	NA	NA	-5108	-13	intron_retention	FALSE	canonical	3	140	junction_1	53.245290325326	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGCAATAGAATCGAGAG	NA	False	NA	NA	False	AATAAA	-11	NA	100571231	100644627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_100571293_100576457_100576608_100577100_100577216_100577350_100577468_100582673_100582794_100584365_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605679_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637545_100637672_100638905_100639063_100639693_100639872_100642914
ENSMUSG00000031314.19_32	chrX	+	7161	38	NIC	ENSMUSG00000031314.19	novel	5954	39	NA	NA	74	-13	intron_retention	FALSE	canonical	3	145	junction_4	48.5611826331382	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGCAATAGAATCGAGAG	4189	False	NA	NA	False	AATAAA	-11	NA	100576438	100644627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100576608_100577100_100577216_100577350_100577468_100582673_100582794_100584365_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605679_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637545_100637672_100638905_100639063_100639693_100639872_100642914
ENSMUSG00000031314.19_40	chrX	+	7091	38	FSM	ENSMUSG00000031314.19	ENSMUST00000118878.8	7210	38	106	13	81	-13	multi-exon	FALSE	canonical	3	80	junction_4	54.4176286265063	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGCAATAGAATCGAGAG	4196	False	NA	NA	False	AATAAA	-11	NA	100576445	100644627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_100576608_100577100_100577216_100577350_100577468_100582673_100582794_100584428_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605679_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637545_100637672_100638905_100639063_100639693_100639872_100642914
ENSMUSG00000031320.10_1	chrX	-	901	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	71	3	13	-3	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	5262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTGGTTTGCTGTTGC	NA	False	NA	NA	False	ATTAAA	-15	NA	101232929	101228549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
ENSMUSG00000031320.10_2	chrX	-	875	6	ISM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	1022	4	964	-4	3prime_fragment	FALSE	canonical	3	14744	junction_4	846.047185445351	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTTTTGGTTTGCTGTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	101231978	101228550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899
ENSMUSG00000031325.16_0	chrX	-	2880	2	Fusion	ENSMUSG00000082229.2_ENSMUSG00000031325.16	novel	685	4	NA	NA	-43	-11	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAATTTCATGGTGTT	NA	False	NA	NA	False	AATAAA	-4	NA	102355431	102227792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chrX_-_102230480_102355238
ENSMUSG00000031325.16_10	chrX	-	4755	4	NIC	ENSMUSG00000031325.16	novel	685	4	NA	NA	-1	4175	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	5.71547606649408	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGAGTTTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	102296654	102269458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_102273781_102276407_102276548_102277627_102277876_102296609
ENSMUSG00000031325.16_6	chrX	-	3236	3	NIC	ENSMUSG00000031325.16	novel	685	4	NA	NA	-77	2614	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATCTTAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	102355465	102271019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_102273781_102277627_102277876_102355238
ENSMUSG00000031325.16_9	chrX	-	4901	4	FSM	ENSMUSG00000031325.16	ENSMUST00000127012.9	685	4	-44	-4172	-44	4172	multi-exon	FALSE	canonical	3	19	junction_2	0.816496580927726	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAGAAAGAGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	102355432	102269461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_102273781_102276407_102276548_102277627_102277876_102355238
ENSMUSG00000031327.11_0	chrX	+	3521	6	FSM	ENSMUSG00000031327.11	ENSMUST00000116547.3	7375	6	108	3746	108	-3746	multi-exon	FALSE	canonical	3	35	junction_3	5.41848687365763	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAGGAAAGGAAAG	NA	False	NA	-10	True	NA	NA	NA	102400189	102435952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_102400496_102409819_102409875_102417204_102417361_102430860_102430918_102431592_102431653_102433065
ENSMUSG00000031327.11_2	chrX	+	3681	1	ISM	ENSMUSG00000031327.11	ENSMUST00000116547.3	7375	6	35933	3	35933	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGAGTTGAACCGTGTGG	NA	False	NA	5	True	AATAAA	-15	NA	102436014	102439695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_102436000_102439700
ENSMUSG00000031327.11_3	chrX	+	6847	4	ISM	ENSMUSG00000031327.11	ENSMUST00000116547.3	7375	6	17179	3	17179	-3	3prime_fragment	FALSE	canonical	3	35	junction_1	6.34209919681348	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGAGTTGAACCGTGTGG	NA	False	NA	5	True	AATAAA	-15	NA	102417260	102439695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_102417361_102430860_102430918_102431592_102431653_102433065
ENSMUSG00000031327.11_4	chrX	+	3008	3	ISM	ENSMUSG00000031327.11	ENSMUST00000116547.3	7375	6	30811	3710	30811	-3710	3prime_fragment	FALSE	canonical	3	39	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGGAAAGGAAAGGAAAGG	NA	False	NA	26	True	NA	NA	NA	102430892	102435988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_102430918_102431592_102431653_102433065
ENSMUSG00000031328.17_11	chrX	-	3184	18	ISM	ENSMUSG00000031328.17	ENSMUST00000144429.8	8233	47	15759	6	-69	-4	3prime_fragment	FALSE	canonical	3	578	junction_14	63.5516301016844	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAATGTAGCTTTCATGG	NA	False	NA	-9	True	AATAAA	-19	NA	73274245	73267072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457_73271581_73271691_73271845_73271926_73272131_73272365_73272528_73272624_73272799_73272986_73273116_73273431_73273573_73273661_73273765_73273906_73274003_73274111
ENSMUSG00000031328.17_4	chrX	-	8220	46	FSM	ENSMUSG00000031328.17	ENSMUST00000101454.9	8345	46	123	2	-13	-2	multi-exon	FALSE	canonical	3	440	junction_27	88.6461017644018	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGTAGCTTTCATGGAA	NA	False	NA	-7	True	AATAAA	-21	NA	73290017	73267070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457_73271581_73271691_73271845_73271926_73272131_73272365_73272528_73272624_73272799_73272986_73273116_73273431_73273573_73273661_73273765_73273906_73274003_73274111_73274360_73276754_73276945_73277527_73277685_73277768_73277893_73278209_73278381_73278470_73278632_73278715_73278879_73278961_73279136_73279225_73279824_73280348_73280612_73280727_73280846_73281026_73281197_73281287_73281379_73281461_73281623_73281709_73281834_73282704_73282849_73282939_73283054_73283257_73283452_73283551_73283689_73283810_73283935_73284018_73284157_73284708_73284910_73284992_73285156_73285248_73285327_73285406_73285526_73286097_73286246_73286333_73286432_73286522_73286772_73289669
ENSMUSG00000031328.17_5	chrX	-	8239	47	FSM	ENSMUSG00000031328.17	ENSMUST00000033699.13	8312	47	144	-71	-13	-7	multi-exon	FALSE	canonical	3	112	junction_19	126.416146359915	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTGAATGTAGCTTTCA	NA	False	NA	-12	True	AATAAA	-16	NA	73290017	73267075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457_73271581_73271691_73271845_73271926_73272131_73272365_73272528_73272624_73272799_73272986_73273116_73273431_73273573_73273661_73273765_73273906_73274003_73274111_73274360_73276572_73276597_73276754_73276945_73277527_73277685_73277768_73277893_73278209_73278381_73278470_73278632_73278715_73278879_73278961_73279136_73279225_73279824_73280348_73280612_73280727_73280846_73281026_73281197_73281287_73281379_73281461_73281623_73281709_73281834_73282704_73282849_73282939_73283054_73283257_73283452_73283551_73283689_73283810_73283935_73284018_73284157_73284708_73284910_73284992_73285156_73285248_73285327_73285406_73285526_73286097_73286246_73286333_73286432_73286522_73286772_73289669
ENSMUSG00000031328.17_9	chrX	-	4731	26	ISM	ENSMUSG00000031328.17	ENSMUST00000101454.9	8345	46	10620	6	48	-6	3prime_fragment	FALSE	canonical	3	444	junction_18	77.9353988890799	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGAATGTAGCTTTCAT	NA	False	NA	-11	True	AATAAA	-17	NA	73279520	73267074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457_73271581_73271691_73271845_73271926_73272131_73272365_73272528_73272624_73272799_73272986_73273116_73273431_73273573_73273661_73273765_73273906_73274003_73274111_73274360_73276754_73276945_73277527_73277685_73277768_73277893_73278209_73278381_73278470_73278632_73278715_73278879_73278961_73279136_73279225
ENSMUSG00000031329.5_1	chrX	+	818	7	FSM	ENSMUSG00000031329.5	ENSMUST00000033691.5	812	7	1	-7	1	7	multi-exon	FALSE	canonical	3	20	junction_2	4.2687494916219	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGTGTCACTGTT	NA	False	NA	8	True	AATAAA	-17	NA	102458073	102468193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_102458253_102459640_102459677_102460356_102460394_102461814_102461897_102464105_102464207_102465593_102465653_102467869
ENSMUSG00000031333.8_1	chrX	-	5650	16	FSM	ENSMUSG00000031333.8	ENSMUST00000033695.6	5667	16	12	5	12	-5	multi-exon	FALSE	canonical	3	253	junction_7	23.4516997725585	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGAGTGTCTGGTGGA	9873	False	NA	-7	True	AATAAA	-19	NA	103457440	103324267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103366939_103367060_103386099_103386187_103388530_103388609_103457262
ENSMUSG00000031333.8_17	chrX	-	4071	5	ISM	ENSMUSG00000031333.8	ENSMUST00000033695.6	5667	16	113987	6	113987	-6	3prime_fragment	FALSE	canonical	3	290	junction_3	15.1410039297267	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAATGAGTGTCTGGTGG	NA	False	NA	-8	True	AATAAA	-18	NA	103343465	103324268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374
ENSMUSG00000031333.8_3	chrX	-	2132	1	ISM	ENSMUSG00000031333.8	ENSMUST00000033695.6	5667	16	131053	5	131053	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGAGTGTCTGGTGGA	NA	False	NA	-7	True	AATAAA	-19	NA	103326399	103324267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_103324300_103326400
ENSMUSG00000031337.17_1	chrX	+	3338	15	FSM	ENSMUSG00000031337.17	ENSMUST00000061970.12	3379	15	28	13	-2	-6	multi-exon	FALSE	canonical	3	290	junction_14	28.3207755284104	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTAACAGTATTTCCA	NA	False	NA	3	True	AATAAA	-35	NA	70258639	70358888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
ENSMUSG00000031337.17_22	chrX	+	3360	15	NIC	ENSMUSG00000031337.17	novel	3379	15	NA	NA	-5	-6	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	80.3753947525774	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTAACAGTATTTCCA	NA	False	NA	3	True	AATAAA	-35	NA	70258682	70358888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_70258754_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
ENSMUSG00000031337.17_4	chrX	+	3222	14	NIC	ENSMUSG00000031337.17	novel	3379	15	NA	NA	0	-6	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	91.7350184469783	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTAACAGTATTTCCA	NA	False	NA	3	True	AATAAA	-35	NA	70258644	70358888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
ENSMUSG00000031337.17_8	chrX	+	2617	14	ISM	ENSMUSG00000031337.17	ENSMUST00000061970.12	3379	15	37	6494	4	-1510	5prime_fragment	FALSE	canonical	3	300	junction_1	26.1022114731105	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCATTTGGAACCTTGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	70258648	70352407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305
ENSMUSG00000031347.13_0	chrX	-	1052	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	60	174	60	-2	multi-exon	TRUE	canonical	3	590	junction_4	36.4862987983161	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCTCATTCTTTAAAGG	NA	False	NA	-15	True	AATAAA	-15	NA	71961957	71957311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961919
ENSMUSG00000031347.13_1	chrX	-	1014	4	FSM	ENSMUSG00000031347.13	ENSMUST00000033713.11	1026	4	9	3	9	-3	multi-exon	FALSE	canonical	3	611	junction_2	29.9146935282461	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTCTCATTCTTTAAAG	NA	False	NA	-16	True	AATAAA	-14	NA	71960453	71957312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293
ENSMUSG00000031349.5_1	chrX	+	1744	8	FSM	ENSMUSG00000031349.5	ENSMUST00000033715.5	2168	8	41	383	41	-383	multi-exon	FALSE	canonical	3	334	junction_6	28.7537042866494	379	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCACAGACTCTGGTGTGG	NA	False	NA	13	True	CATAAA	-13	NA	71962203	72001737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
ENSMUSG00000031351.16_0	chrX	+	1423	12	ISM	ENSMUSG00000031351.16	ENSMUST00000164800.8	3557	19	1	27694	1	6444	5prime_fragment	FALSE	canonical	3	42	junction_6	15.1226391504933	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATGTTGCTTATAGGAC	NA	False	NA	NA	False	ATTAAA	-12	NA	72030945	72047455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72031126_72040640_72040719_72040887_72041012_72041343_72041410_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045010_72045053_72046180_72046265_72046978
ENSMUSG00000031351.16_1	chrX	+	3502	19	FSM	ENSMUSG00000031351.16	ENSMUST00000164800.8	3557	19	23	32	2	-32	multi-exon	FALSE	canonical	3	40	junction_12	13.3427050397503	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGCAGTATTATAACTT	NA	False	NA	13	True	AATAAA	-13	NA	72030967	72075117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72031126_72040640_72040719_72040887_72041012_72041343_72041410_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045010_72045053_72046180_72046265_72046978_72047066_72056045_72056235_72059344_72059456_72060300_72060382_72061979_72062049_72064473_72064577_72072450_72072550_72073278
ENSMUSG00000031351.16_24	chrX	+	1441	1	ISM	ENSMUSG00000031351.16	ENSMUST00000164800.8	3557	19	42732	32	41818	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGCAGTATTATAACTT	NA	False	NA	13	True	AATAAA	-13	NA	72073676	72075117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72073700_72075100
ENSMUSG00000031351.16_4	chrX	+	3499	19	FSM	ENSMUSG00000031351.16	ENSMUST00000114546.9	3533	19	2	32	2	-32	multi-exon	FALSE	canonical	3	15	junction_9	16.5279411756629	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGCAGTATTATAACTT	NA	False	NA	13	True	AATAAA	-13	NA	72030967	72075117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72031126_72040640_72040719_72040887_72041012_72041343_72041410_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045013_72045053_72046180_72046265_72046978_72047066_72056045_72056235_72059344_72059456_72060300_72060382_72061979_72062049_72064473_72064577_72072450_72072550_72073278
ENSMUSG00000031352.11_0	chrX	-	2319	7	NIC	ENSMUSG00000031352.11	novel	2473	7	NA	NA	27	-6	combination_of_known_junctions	FALSE	canonical	3	62	junction_6	191.804950115707	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAACTTCTTAGAGTGAT	NA	False	NA	-6	True	AATAAA	-19	NA	168103341	168094531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168103170
ENSMUSG00000031352.11_1	chrX	-	2517	7	FSM	ENSMUSG00000031352.11	ENSMUST00000112115.2	2473	7	-51	7	27	-7	multi-exon	FALSE	canonical	3	158	junction_6	157.36096155725	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAAACTTCTTAGAGTGA	NA	False	NA	-7	True	AATAAA	-18	NA	168103341	168094532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168102971
ENSMUSG00000031352.11_2	chrX	-	2378	7	FSM	ENSMUSG00000031352.11	ENSMUST00000033717.9	2320	7	-65	7	27	-7	multi-exon	FALSE	canonical	3	290	junction_6	111.381351920129	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAAACTTCTTAGAGTGA	NA	False	NA	-7	True	AATAAA	-18	NA	168103341	168094532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168103110
ENSMUSG00000031353.14_0	chrX	+	1897	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	42	305	-18	31	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	3092	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAAGTTTGTTTTGTT	NA	False	NA	-1	True	AATAAA	-6	NA	161543439	161561783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
ENSMUSG00000031357.4_0	chrX	-	2277	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	15	-205	15	205	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAGAATTGTACGTATT	NA	False	NA	-7	True	AATAAA	-17	NA	161671428	161639847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
ENSMUSG00000031357.4_6	chrX	-	3395	4	FSM	ENSMUSG00000031357.4	ENSMUST00000134629.2	720	4	-1616	-1059	-1616	207	multi-exon	FALSE	canonical	3	113	junction_1	18.3847763108502	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGAATTGTACGTATTTA	NA	False	NA	-5	True	AATAAA	-19	NA	161648084	161639845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055
ENSMUSG00000031358.18_10	chrX	-	2254	12	NNC	ENSMUSG00000031358.18	novel	2316	12	NA	NA	56	2	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_9	11.0191418723649	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGCAAGAGGAGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	167456838	167437115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453305_167454138_167454240_167454790_167454887_167456723
ENSMUSG00000031358.18_2	chrX	-	2432	12	ISM	ENSMUSG00000031358.18	ENSMUST00000033725.16	2399	13	1346	3	-33	2	3prime_fragment	TRUE	canonical	3	23	junction_11	7.54928708800971	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGCAAGAGGAGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	167455548	167437115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167455258
ENSMUSG00000031358.18_22	chrX	-	4263	11	NIC	ENSMUSG00000031358.18	novel	2316	12	NA	NA	44	2	intron_retention	FALSE	canonical	3	28	junction_8	6.44980619863884	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGCAAGAGGAGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	167456850	167437115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167456723
ENSMUSG00000031358.18_7	chrX	-	2255	12	FSM	ENSMUSG00000031358.18	ENSMUST00000112137.2	2316	12	56	5	56	0	multi-exon	FALSE	canonical	3	28	junction_9	6.17646827325928	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAGAAGCAAGAGGAGTT	NA	False	NA	NA	False	AATAAA	-18	NA	167456838	167437117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167456723
ENSMUSG00000031360.15_0	chrX	+	2199	19	NIC	ENSMUSG00000031360.15	novel	1665	15	NA	NA	8	9	combination_of_known_junctions	TRUE	canonical	2	23	junction_1	48.2283982220199	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCAGAAAGTGGTTTTGTG	NA	False	NA	20	True	ATTAAA	-26	NA	161684248	161814324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_161684391_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
ENSMUSG00000031360.15_1	chrX	+	2192	19	FSM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	-25	1186	2	3	multi-exon	FALSE	canonical	2	133	junction_1	30.7828415409191	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGCCCGGCAGAAAGTGGT	NA	False	NA	14	True	ATTAAA	-20	NA	161684602	161814318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
ENSMUSG00000031360.15_7	chrX	+	2353	19	FSM	ENSMUSG00000031360.15	ENSMUST00000112301.8	3099	19	-251	997	-13	9	multi-exon	FALSE	canonical	2	41	junction_1	44.8724185955837	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCAGAAAGTGGTTTTGTG	NA	False	NA	20	True	ATTAAA	-26	NA	161684614	161814324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_161684911_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
ENSMUSG00000031362.18_0	chrX	-	1563	8	NIC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	-23	0	intron_retention	FALSE	canonical	3	63	junction_1	109.115553802529	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286697	72277684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72286267_72286581
ENSMUSG00000031362.18_1	chrX	-	1180	9	FSM	ENSMUSG00000031362.18	ENSMUST00000114530.8	1220	9	42	-2	-20	2	multi-exon	FALSE	canonical	3	63	junction_1	102.200477004758	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	-6	True	AATAAA	-17	NA	72286694	72277682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286183_72286267_72286581
ENSMUSG00000031362.18_3	chrX	-	2428	7	NIC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	18	-2	intron_retention	FALSE	canonical	3	63	junction_1	100.045684009301	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACTTGTTGGCATGAGT	NA	False	NA	-10	True	AATAAA	-13	NA	72286718	72277686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72283332_72284921_72284991_72285673_72286267_72286581
ENSMUSG00000031362.18_5	chrX	-	1119	9	NIC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_7	119.637407924946	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286671	72277684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286219_72286267_72286581
ENSMUSG00000031365.14_1	chrX	+	6276	5	FSM	ENSMUSG00000031365.14	ENSMUST00000114499.8	6284	5	6	2	6	-2	multi-exon	FALSE	canonical	3	19	junction_2	9.63068014212911	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGGTCTTTCTTGACTCA	NA	False	NA	10	True	NA	NA	NA	72386232	72402684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72386358_72388442_72388519_72395414_72395530_72396441_72396544_72396826
ENSMUSG00000031365.14_10	chrX	+	3690	1	ISM	ENSMUSG00000031365.14	ENSMUST00000114499.8	6284	5	12769	1	10922	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGTCTTTCTTGACTCAT	NA	False	NA	11	True	NA	NA	NA	72398995	72402685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72399000_72402700
ENSMUSG00000031365.14_3	chrX	+	6369	6	FSM	ENSMUSG00000031365.14	ENSMUST00000033731.4	6376	6	6	1	6	-1	multi-exon	FALSE	canonical	3	12	junction_2	13.9226434271657	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGTCTTTCTTGACTCAT	NA	False	NA	11	True	NA	NA	NA	72386232	72402685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72386358_72388442_72388519_72394874_72394967_72395414_72395530_72396441_72396544_72396826
ENSMUSG00000031367.16_0	chrX	+	2070	5	NNC	ENSMUSG00000031367.16	novel	3199	5	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	59.8351903147303	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGTCTCATGTGAATGA	NA	False	NA	-3	True	AATAAA	-12	NA	162692145	162712541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162711021
ENSMUSG00000031367.16_1	chrX	+	3221	5	FSM	ENSMUSG00000031367.16	ENSMUST00000112294.9	3199	5	-23	1	-20	-1	multi-exon	FALSE	canonical	3	133	junction_1	15.8192920195564	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGTCTCATGTGAATGA	NA	False	NA	-3	True	AATAAA	-12	NA	162692117	162712541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162709898
ENSMUSG00000031367.16_11	chrX	+	2280	1	ISM	ENSMUSG00000031367.16	ENSMUST00000112294.9	3199	5	18121	1	15865	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGTCTCATGTGAATGA	NA	False	NA	-3	True	AATAAA	-12	NA	162710261	162712541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_162710300_162712500
ENSMUSG00000031367.16_3	chrX	+	1775	5	FSM	ENSMUSG00000031367.16	ENSMUST00000033734.14	1785	5	10	0	7	0	multi-exon	FALSE	canonical	3	11	junction_4	61.936963923008	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTGGTGTGCTTTTC	NA	False	NA	2	True	AATAAA	-9	NA	162692147	162716355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162715128
ENSMUSG00000031370.13_0	chrX	-	1802	12	NIC	ENSMUSG00000031370.13	novel	2735	11	NA	NA	5	-832	combination_of_known_junctions	FALSE	canonical	3	107	junction_1	279.519747524568	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTCTGTCTTTTTAT	NA	False	NA	-9	True	AATAAA	-14	NA	162741652	162719270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_162719962_162722301_162722412_162723114_162723171_162726095_162726310_162732255_162732375_162733182_162733222_162736565_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
ENSMUSG00000031370.13_2	chrX	-	1946	11	FSM	ENSMUSG00000031370.13	ENSMUST00000112289.9	2735	11	-43	832	29	-832	multi-exon	FALSE	canonical	3	107	junction_1	287.175643117588	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTCTGTCTTTTTAT	NA	False	NA	-9	True	AATAAA	-14	NA	162741628	162719270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_162719962_162722301_162722412_162723114_162723171_162726095_162726310_162732255_162732375_162733182_162733222_162736565_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
ENSMUSG00000031370.13_28	chrX	-	1528	6	NIC	ENSMUSG00000031370.13	novel	460	6	NA	NA	4	975	combination_of_known_junctions	FALSE	canonical	3	185	junction_5	227.558695724861	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTTGCCTTGAAGATAT	NA	False	NA	-13	True	AATATA	-12	NA	162741653	162735611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
ENSMUSG00000031370.13_29	chrX	-	1669	5	FSM	ENSMUSG00000031370.13	ENSMUST00000090840.10	3867	5	-35	2233	28	972	multi-exon	FALSE	canonical	3	635	junction_1	78.6924392810389	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCATCTTGCCTTGAAGA	NA	False	NA	-16	True	AATATA	-9	NA	162741629	162735614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
ENSMUSG00000031370.13_31	chrX	-	1281	6	FSM	ENSMUSG00000031370.13	ENSMUST00000147928.8	460	6	-92	-729	17	680	multi-exon	FALSE	canonical	3	79	junction_5	268.200372855818	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTGTTGTCAGAGCAA	NA	False	NA	-1	True	ATTAAA	-42	NA	162741640	162735906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741522
ENSMUSG00000031370.13_41	chrX	-	1463	4	FSM	ENSMUSG00000031370.13	ENSMUST00000139166.2	504	4	18	-977	18	977	multi-exon	FALSE	canonical	3	635	junction_1	90.1566537878499	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTGCCTTGAAGATATTT	NA	False	NA	-11	True	AATATA	-14	NA	162741140	162735609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911
ENSMUSG00000031371.15_2	chrX	-	1341	10	FSM	ENSMUSG00000031371.15	ENSMUST00000033737.15	1380	10	36	3	36	-1	multi-exon	FALSE	canonical	3	498	junction_3	42.8281089190294	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGACGTTGCCTTCGGACT	NA	False	NA	-15	True	AATAAA	-14	NA	72502614	72480923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72491565_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ENSMUSG00000031371.15_9	chrX	-	2154	9	NIC	ENSMUSG00000031371.15	novel	1380	10	NA	NA	46	0	intron_retention	FALSE	canonical	3	498	junction_5	41.9545885452354	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTTGCCTTCGGACTA	NA	False	NA	-14	True	AATAAA	-15	NA	72502604	72480922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72481172_72489415_72489531_72490533_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ENSMUSG00000031372.8_0	chrX	-	1051	2	FSM	ENSMUSG00000031372.8	ENSMUST00000033738.8	1017	2	-43	9	-43	-9	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCTGATTTACTGGCCA	NA	False	NA	NA	False	AATAAA	-16	NA	72478993	72477319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72478280_72478902
ENSMUSG00000031378.15_0	chrX	+	3510	10	FSM	ENSMUSG00000031378.15	ENSMUST00000002084.14	3648	10	134	4	-9	-4	multi-exon	TRUE	canonical	3	38	junction_7	8.3901765016235	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATCCTGCCTCCTGAACT	NA	False	NA	14	True	AGTAAA	-15	NA	72760336	72782136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72761537_72764519_72764701_72772589_72772733_72772814_72772984_72774399_72774495_72777614_72777761_72778067_72778214_72780395_72780481_72780708_72780835_72780917
ENSMUSG00000031378.15_10	chrX	+	1413	3	ISM	ENSMUSG00000031378.15	ENSMUST00000002084.14	3648	10	20205	9	20062	-9	3prime_fragment	FALSE	canonical	3	56	junction_1	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTACAATCCTGCCTCCT	NA	False	NA	9	True	AGTAAA	-10	NA	72780407	72782131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72780481_72780708_72780835_72780917
ENSMUSG00000031378.15_11	chrX	+	1311	2	ISM	ENSMUSG00000031378.15	ENSMUST00000002084.14	3648	10	20531	13	20388	-13	3prime_fragment	FALSE	canonical	3	67	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAAGTACAATCCTGCC	NA	False	NA	5	True	AGTAAA	-6	NA	72780733	72782127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72780835_72780917
ENSMUSG00000031378.15_9	chrX	+	1502	4	ISM	ENSMUSG00000031378.15	ENSMUST00000002084.14	3648	10	17939	4	17796	-4	3prime_fragment	FALSE	canonical	3	38	junction_1	11.9536140513607	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATCCTGCCTCCTGAACT	NA	False	NA	14	True	AGTAAA	-15	NA	72778141	72782136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72778214_72780395_72780481_72780708_72780835_72780917
ENSMUSG00000031379.14_0	chrX	+	1236	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	134	229	-8	-229	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATGTTTTTTTGTAA	NA	False	NA	NA	False	AATAAA	-18	NA	163052560	163155778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031379.14_4	chrX	+	1114	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	11	-229	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	80.2507788124203	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATGTTTTTTTGTAA	NA	False	NA	NA	False	AATAAA	-18	NA	163052553	163155778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_163052674_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031379.14_6	chrX	+	1179	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	-1	-234	combination_of_known_splicesites	FALSE	canonical	3	32	junction_6	81.4048524352203	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTAAAAAGATGTTTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	163052567	163155773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031381.17_21	chrX	+	3534	5	ISM	ENSMUSG00000031381.17	ENSMUST00000112255.8	3597	6	2674	4	-1	-2	3prime_fragment	FALSE	canonical	3	160	junction_1	42.1337157155644	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTATTTTTGTCTCAGT	NA	False	NA	21	True	AATAAA	-21	NA	163205578	163216905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ENSMUSG00000031381.17_23	chrX	+	4146	4	FSM	ENSMUSG00000031381.17	ENSMUST00000155849.2	3321	4	1026	-1851	1026	-5	multi-exon	FALSE	canonical	3	227	junction_1	22.7596133534821	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTCTTATTTTTGTCTC	NA	False	NA	18	True	AATAAA	-18	NA	163209531	163216902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_163211061_163211535_163211669_163211806_163212014_163214625
ENSMUSG00000031381.17_31	chrX	+	1520	1	ISM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	12607	3	6884	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTTGTCTCAGTTTGT	NA	False	NA	25	True	AATAAA	-25	NA	163215389	163216909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_163215400_163216900
ENSMUSG00000031381.17_6	chrX	+	3554	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	33	7	13	-2	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTATTTTTGTCTCAGT	NA	False	NA	21	True	AATAAA	-21	NA	163202815	163216905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ENSMUSG00000031381.17_9	chrX	+	3179	6	FSM	ENSMUSG00000031381.17	ENSMUST00000112257.10	3212	6	31	2	11	-2	multi-exon	FALSE	canonical	3	48	junction_2	78.77715404862	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTATTTTTGTCTCAGT	NA	False	NA	21	True	AATAAA	-21	NA	163202813	163216905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_163202837_163205579_163205983_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ENSMUSG00000031383.9_1	chrX	+	2706	4	FSM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	10	6	10	-6	multi-exon	TRUE	canonical	3	583	junction_1	9.62635271879577	1220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAACAGAGAGGTTGTTG	NA	False	NA	22	True	AATAAA	-16	NA	72683034	72687114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72683248_72683798_72684411_72684952_72685409_72685689
ENSMUSG00000031383.9_11	chrX	+	2278	3	ISM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	989	6	989	-6	3prime_fragment	FALSE	canonical	3	590	junction_2	8	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAACAGAGAGGTTGTTG	NA	False	NA	22	True	AATAAA	-16	NA	72684013	72687114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72684411_72684952_72685409_72685689
ENSMUSG00000031383.9_12	chrX	+	1746	2	ISM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	2063	6	2063	-6	3prime_fragment	FALSE	canonical	3	590	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAACAGAGAGGTTGTTG	NA	False	NA	22	True	AATAAA	-16	NA	72685087	72687114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72685409_72685689
ENSMUSG00000031383.9_13	chrX	+	975	1	ISM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	3115	6	3115	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAACAGAGAGGTTGTTG	NA	False	NA	22	True	AATAAA	-16	NA	72686139	72687114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72686100_72687100
ENSMUSG00000031385.15_0	chrX	+	2357	15	ISM	ENSMUSG00000031385.15	ENSMUST00000002079.7	6030	35	10378	12	1946	-12	3prime_fragment	FALSE	canonical	0	0	junction_1	1.4638501094228	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACAATCTCAATCTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	72811082	72816108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72811279_72811386_72811488_72811563_72811788_72811945_72812125_72812295_72812363_72812739_72813068_72813207_72813312_72813395_72813493_72813861_72814041_72814184_72814346_72814700_72814849_72815016_72815082_72815148_72815225_72815351_72815427_72815751
ENSMUSG00000031386.15_0	chrX	-	8884	26	NIC	ENSMUSG00000031386.15	novel	8262	26	NA	NA	-623	-4	combination_of_known_junctions	FALSE	canonical	3	139	junction_8	79.9086878881139	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATCTGGTATTTA	NA	False	NA	-19	True	ATTAAA	-14	NA	73010586	72986406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72992025_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
ENSMUSG00000031386.15_10	chrX	-	4328	10	NIC	ENSMUSG00000031386.15	novel	8262	26	NA	NA	-725	-4	combination_of_known_junctions	FALSE	canonical	3	139	junction_8	113.119515077453	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATCTGGTATTTA	NA	False	NA	-19	True	ATTAAA	-14	NA	72993584	72986406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72992025_72992507_72992672_72992803
ENSMUSG00000031386.15_12	chrX	-	1249	1	ISM	ENSMUSG00000031386.15	ENSMUST00000033761.13	8138	26	22308	9	3383	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATCTGGTATTTA	NA	False	NA	-19	True	ATTAAA	-14	NA	72987655	72986406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72986400_72987700
ENSMUSG00000031386.15_15	chrX	-	4274	10	FSM	ENSMUSG00000031386.15	ENSMUST00000128136.8	3480	10	-800	6	-800	-4	multi-exon	FALSE	canonical	3	79	junction_7	130.872287194637	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATCTGGTATTTA	NA	False	NA	-19	True	ATTAAA	-14	NA	72993659	72986406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991124_72991447_72991893_72992507_72992672_72992803
ENSMUSG00000031386.15_2	chrX	-	2727	7	ISM	ENSMUSG00000031386.15	ENSMUST00000128136.8	3480	10	1818	6	-3	-4	3prime_fragment	FALSE	canonical	3	450	junction_2	19.9227675453654	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATCTGGTATTTA	NA	False	NA	-19	True	ATTAAA	-14	NA	72991041	72986406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796
ENSMUSG00000031386.15_23	chrX	-	3101	8	ISM	ENSMUSG00000031386.15	ENSMUST00000033761.13	8138	26	18221	9	210	-4	3prime_fragment	FALSE	canonical	3	331	junction_7	56.7924973486995	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATCTGGTATTTA	NA	False	NA	-19	True	ATTAAA	-14	NA	72991742	72986406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447
ENSMUSG00000031386.15_29	chrX	-	8887	26	FSM	ENSMUSG00000031386.15	ENSMUST00000114372.3	8262	26	-629	4	-623	-4	multi-exon	FALSE	canonical	3	79	junction_7	97.9245913956244	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATCTGGTATTTA	NA	False	NA	-19	True	ATTAAA	-14	NA	73010586	72986406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991124_72991447_72992025_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
ENSMUSG00000031386.15_4	chrX	-	8546	26	NIC	ENSMUSG00000031386.15	novel	8138	26	NA	NA	-414	-4	combination_of_known_junctions	FALSE	canonical	3	79	junction_7	87.5837793201458	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATCTGGTATTTA	NA	False	NA	-19	True	ATTAAA	-14	NA	73010377	72986406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991124_72991447_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
ENSMUSG00000031386.15_5	chrX	-	4123	10	ISM	ENSMUSG00000031386.15	ENSMUST00000033761.13	8138	26	16452	9	-652	-4	3prime_fragment	FALSE	canonical	3	318	junction_8	69.6052360737961	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATCTGGTATTTA	NA	False	NA	-19	True	ATTAAA	-14	NA	72993511	72986406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72991893_72992507_72992672_72992803
ENSMUSG00000031386.15_6	chrX	-	8752	26	FSM	ENSMUSG00000031386.15	ENSMUST00000033761.13	8138	26	-623	9	-623	-4	multi-exon	FALSE	canonical	3	303	junction_17	65.7475900699029	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATCTGGTATTTA	NA	False	NA	-19	True	ATTAAA	-14	NA	73010586	72986406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
ENSMUSG00000031387.15_13	chrX	-	1364	11	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	616.022150575773	96	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGCTTGTGTGCGCGCCT	NA	False	NA	-5	True	AATAAA	-15	NA	72974406	72965729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974014_72974124_72974319
ENSMUSG00000031387.15_5	chrX	-	1365	11	FSM	ENSMUSG00000031387.15	ENSMUST00000116578.8	1418	11	50	3	-8	-1	multi-exon	FALSE	canonical	3	1767	junction_7	141.190120050944	1119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGCTTGTGTGCGCGCCT	NA	False	NA	-5	True	AATAAA	-15	NA	72974406	72965729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
ENSMUSG00000031387.15_7	chrX	-	1323	11	FSM	ENSMUSG00000031387.15	ENSMUST00000114379.8	1318	11	-8	3	-8	-1	multi-exon	FALSE	canonical	3	383	junction_8	509.144390129166	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGCTTGTGTGCGCGCCT	NA	False	NA	-5	True	AATAAA	-15	NA	72974406	72965729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973834_72973869_72974013_72974124_72974319
ENSMUSG00000031388.15_0	chrX	-	983	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114389.10	1031	8	41	7	1	5	multi-exon	FALSE	canonical	3	794	junction_1	110.126457923125	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGCATAGTGGGGTAT	NA	False	NA	-10	True	AATAAA	-29	NA	72965489	72960487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUSG00000031388.15_1	chrX	-	988	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114387.8	979	8	-5	-4	-5	4	multi-exon	FALSE	canonical	3	116	junction_1	343.561063104701	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGTGCATAGTGGGGTA	NA	False	NA	-11	True	AATAAA	-28	NA	72965499	72960488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72960889_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUSG00000031388.15_3	chrX	-	903	8	FSM	ENSMUSG00000031388.15	ENSMUST00000033763.15	962	8	51	8	-5	-6	multi-exon	FALSE	canonical	3	198	junction_1	315.02562254068	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGCATAGTGGGGTATG	NA	False	NA	-9	True	AATAAA	-30	NA	72965499	72960486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72960802_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUSG00000031389.18_25	chrX	-	4345	4	ISM	ENSMUSG00000031389.18	ENSMUST00000114406.9	2749	19	-41	8063	-1	-2312	5prime_fragment	FALSE	canonical	3	29	junction_1	2.44948974278318	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAACAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	72954943	72946026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72949826_72950034_72950198_72950274_72950483_72954768
ENSMUSG00000031389.18_27	chrX	-	3014	6	ISM	ENSMUSG00000031389.18	ENSMUST00000128329.2	2367	15	92	17563	92	-10098	5prime_fragment	FALSE	canonical	3	1058	junction_5	27.4328270508163	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATAGTGGGGTATGCTTTT	NA	False	NA	-4	True	AATAAA	-35	NA	72965384	72960481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUSG00000031389.18_29	chrX	-	4274	4	NIC	ENSMUSG00000031388.15	novel	2156	5	NA	NA	0	1	intron_retention	FALSE	canonical	3	1058	junction_3	31.5841028929991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGTGGGGTATGCTTTTTT	NA	False	NA	-2	True	AATAAA	-37	NA	72965461	72960479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72963476_72963568_72964648_72964877_72964977_72965361
ENSMUSG00000031389.18_5	chrX	-	3162	22	FSM	ENSMUSG00000031389.18	ENSMUST00000064376.13	3353	22	11	180	11	0	multi-exon	FALSE	canonical	3	19	junction_18	9.77989051592099	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAATAGCCTGTG	NA	False	NA	NA	False	CATAAA	-17	NA	72954925	72938137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72938570_72939553_72939654_72939999_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72943790_72943883_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949470_72949762_72949826_72950034_72950198_72950274_72950483_72954768
ENSMUSG00000031389.18_6	chrX	-	3248	21	FSM	ENSMUSG00000031389.18	ENSMUST00000145159.8	3208	21	-40	0	-13	0	multi-exon	FALSE	canonical	3	19	junction_17	9.50513019374274	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAATAGCCTGTG	NA	False	NA	NA	False	CATAAA	-17	NA	72954917	72938137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72938570_72939553_72939654_72939999_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949470_72949762_72949826_72950034_72950198_72950274_72950483_72954768
ENSMUSG00000031389.18_8	chrX	-	3690	27	Fusion	ENSMUSG00000031389.18_ENSMUSG00000031388.15	novel	3208	21	NA	NA	-8	0	intron_retention	FALSE	canonical	2	2	junction_20	446.638862694055	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAATAGCCTGTG	NA	False	NA	NA	False	CATAAA	-17	NA	72965502	72938137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chrX_-_72938570_72939553_72939654_72939999_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949470_72949762_72949826_72950034_72950198_72950274_72950483_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUSG00000031391.19_0	chrX	-	5234	27	NIC	ENSMUSG00000031391.19	novel	5113	29	NA	NA	-17	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	1.70276489393682	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAGAGACCATTCCTT	NA	False	NA	NA	False	AATAAA	-8	NA	72924418	72897390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72898873_72899364_72899438_72899748_72899887_72900237_72900400_72900508_72900629_72900773_72900948_72901026_72901150_72901243_72901446_72901647_72901764_72902908_72903132_72903307_72903379_72903624_72903823_72904044_72904156_72904325_72904451_72904653_72904811_72904911_72905079_72905187_72905300_72905883_72906028_72906165_72906298_72906453_72906639_72906762_72906875_72907764_72907936_72908029_72908153_72909222_72909423_72909660_72909767_72913334_72913523_72924299
ENSMUSG00000031391.19_1	chrX	-	2717	10	ISM	ENSMUSG00000031391.19	ENSMUST00000114430.8	5126	27	10476	7	726	-7	3prime_fragment	FALSE	canonical	1	1	junction_5	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAGAGACCATTCCTT	NA	False	NA	NA	False	AATAAA	-8	NA	72903035	72897390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72898873_72899364_72899438_72899748_72899887_72900237_72900400_72900508_72900629_72900773_72900948_72901026_72901150_72901243_72901446_72901647_72901764_72902908
ENSMUSG00000031392.19_1	chrX	-	3381	14	FSM	ENSMUSG00000031392.19	ENSMUST00000114354.10	3835	14	83	371	-4	-359	multi-exon	FALSE	canonical	3	198	junction_10	56.8590076026845	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGTGGAATTTGTTGT	NA	False	NA	-10	True	AATAAA	-24	NA	73067441	73057890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066271_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ENSMUSG00000031392.19_10	chrX	-	3391	14	FSM	ENSMUSG00000031392.19	ENSMUST00000114352.8	3825	14	67	367	-17	-359	multi-exon	FALSE	canonical	3	90	junction_10	79.7365484565473	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGTGGAATTTGTTGT	NA	False	NA	-10	True	AATAAA	-24	NA	73067454	73057890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066268_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ENSMUSG00000031392.19_25	chrX	-	3321	14	NIC	ENSMUSG00000031392.19	novel	3835	14	NA	NA	-25	-359	combination_of_known_junctions	FALSE	canonical	3	36	junction_3	98.3373014276424	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGTGGAATTTGTTGT	NA	False	NA	-10	True	AATAAA	-24	NA	73067462	73057890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_73059108_73060153_73060304_73060735_73061037_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066271_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ENSMUSG00000031392.19_4	chrX	-	3539	14	NIC	ENSMUSG00000031392.19	novel	3835	14	NA	NA	-30	-359	combination_of_known_junctions	FALSE	canonical	3	20	junction_9	101.479819896144	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGTGGAATTTGTTGT	NA	False	NA	-10	True	AATAAA	-24	NA	73067467	73057890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065988_73066078_73066271_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ENSMUSG00000031392.19_5	chrX	-	3504	15	FSM	ENSMUSG00000031392.19	ENSMUST00000033769.15	2890	15	72	-686	-10	-359	multi-exon	FALSE	canonical	3	23	junction_4	119.77847324566	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGTGGAATTTGTTGT	NA	False	NA	-10	True	AATAAA	-24	NA	73067447	73057890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061506_73061624_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066271_73066454_73066559_73066671_73066804_73066971_73067140_73067215
ENSMUSG00000031392.19_8	chrX	-	3561	13	NIC	ENSMUSG00000031392.19	novel	3835	14	NA	NA	0	-359	intron_retention	FALSE	canonical	3	272	junction_10	42.1586784264719	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGTGGAATTTGTTGT	NA	False	NA	-10	True	AATAAA	-24	NA	73067437	73057890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066559_73066671_73066804_73066971_73067140_73067215
ENSMUSG00000031393.17_0	chrX	-	5088	1	ISM	ENSMUSG00000031393.17	ENSMUST00000100750.10	10538	4	53751	239	53679	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAAAAATGTCCGTTTG	6933	False	NA	NA	False	TATAAA	-19	NA	73075524	73070436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_73070400_73075500
ENSMUSG00000031393.17_1	chrX	-	1666	3	FSM	ENSMUSG00000031393.17	ENSMUST00000033770.13	1739	3	71	2	-7	-1	multi-exon	FALSE	canonical	3	119	junction_2	51.5	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAACTTAGAGTTTCGTG	NA	False	NA	NA	False	AATAAA	-20	NA	73129225	73078895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73080101_73080587_73080939_73129115
ENSMUSG00000031393.17_2	chrX	-	1790	4	FSM	ENSMUSG00000031393.17	ENSMUST00000100750.10	10538	4	50	8698	-7	-1	multi-exon	FALSE	canonical	3	104	junction_3	52.083266666624	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAACTTAGAGTTTCGTG	NA	False	NA	NA	False	AATAAA	-20	NA	73129225	73078895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73080101_73080587_73080939_73123514_73123639_73129115
ENSMUSG00000031393.17_4	chrX	-	1492	2	ISM	ENSMUSG00000031393.17	ENSMUST00000033770.13	1739	3	48422	2	48329	-1	3prime_fragment	FALSE	canonical	3	222	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAACTTAGAGTTTCGTG	1583	False	NA	NA	False	AATAAA	-20	NA	73080874	73078895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_73080101_73080587
ENSMUSG00000031397.12_0	chrX	+	2494	13	FSM	ENSMUSG00000031397.12	ENSMUST00000010127.12	2473	13	-32	11	-32	-11	multi-exon	FALSE	canonical	2	11	junction_9	3.8151743807532	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACCATCTACTTTATG	6444	False	NA	-5	True	AATAAA	-7	NA	73220832	73252095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73221030_73225389_73225505_73234827_73234926_73237124_73237317_73237399_73237528_73240589_73240784_73241245_73241411_73244203_73244361_73246136_73246268_73248479_73248564_73249479_73249577_73249950_73250071_73251279
ENSMUSG00000031397.12_1	chrX	+	2411	12	NIC	ENSMUSG00000031397.12	novel	2473	13	NA	NA	-46	-11	combination_of_known_splicesites	FALSE	canonical	1	1	junction_10	6.17646827325928	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACCATCTACTTTATG	6430	False	NA	-5	True	AATAAA	-7	NA	73220818	73252095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_73221030_73225389_73225505_73234827_73234926_73237124_73237317_73237399_73237528_73240589_73240784_73241245_73241411_73244203_73244361_73246136_73246268_73248479_73248564_73249950_73250071_73251279
ENSMUSG00000031398.14_0	chrX	+	6748	33	FSM	ENSMUSG00000031398.14	ENSMUST00000004326.4	6943	33	2	193	2	-187	multi-exon	TRUE	canonical	3	8	junction_6	7.59085592999894	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAGTGCATGTCTTTGTC	NA	False	NA	NA	False	ATTAAA	-14	NA	73372673	73388102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73372822_73374574_73375199_73375572_73376113_73376573_73376757_73377152_73377282_73377351_73377453_73377830_73377955_73378037_73378195_73378278_73378379_73378648_73378764_73378903_73379105_73379375_73379473_73379606_73379798_73379882_73380029_73380097_73380219_73380324_73380462_73380577_73380749_73381011_73381106_73381186_73381427_73381516_73381661_73381739_73381975_73382064_73382208_73382295_73382553_73382675_73382743_73382847_73382995_73383071_73383232_73383380_73383485_73383670_73383768_73384036_73384228_73384448_73384619_73385141_73385355_73385526_73385678_73387052
ENSMUSG00000031398.14_12	chrX	+	4500	23	ISM	ENSMUSG00000031398.14	ENSMUST00000004326.4	6943	33	6259	193	93	-187	3prime_fragment	FALSE	canonical	3	13	junction_7	6.69911181975295	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAGTGCATGTCTTTGTC	NA	False	NA	NA	False	ATTAAA	-14	NA	73378930	73388102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73379105_73379375_73379473_73379606_73379798_73379882_73380029_73380097_73380219_73380324_73380462_73380577_73380749_73381011_73381106_73381186_73381427_73381516_73381661_73381739_73381975_73382064_73382208_73382295_73382553_73382675_73382743_73382847_73382995_73383071_73383232_73383380_73383485_73383670_73383768_73384036_73384228_73384448_73384619_73385141_73385355_73385526_73385678_73387052
ENSMUSG00000031398.14_14	chrX	+	3500	16	ISM	ENSMUSG00000031398.14	ENSMUST00000004326.4	6943	33	8302	194	-898	-188	3prime_fragment	FALSE	canonical	3	16	junction_7	5.90442395346254	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCAGTGCATGTCTTTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	73380973	73388101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73381106_73381186_73381427_73381516_73381661_73381739_73381975_73382064_73382208_73382295_73382553_73382675_73382743_73382847_73382995_73383071_73383232_73383380_73383485_73383670_73383768_73384036_73384228_73384448_73384619_73385141_73385355_73385526_73385678_73387052
ENSMUSG00000031398.14_15	chrX	+	3170	15	ISM	ENSMUSG00000031398.14	ENSMUST00000004326.4	6943	33	8715	192	-485	-186	3prime_fragment	FALSE	canonical	3	16	junction_6	6.08485909484202	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGCATGTCTTTGTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	73381386	73388103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73381427_73381516_73381661_73381739_73381975_73382064_73382208_73382295_73382553_73382675_73382743_73382847_73382995_73383071_73383232_73383380_73383485_73383670_73383768_73384036_73384228_73384448_73384619_73385141_73385355_73385526_73385678_73387052
ENSMUSG00000031398.14_17	chrX	+	2585	11	ISM	ENSMUSG00000031398.14	ENSMUST00000154062.8	5561	29	6248	194	356	-194	3prime_fragment	FALSE	canonical	3	16	junction_2	6.01331855134916	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGGGGTCAGTGCATGT	NA	False	NA	NA	False	ATTAAA	-7	NA	73382310	73388095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73382553_73382675_73382743_73382847_73382995_73383071_73383232_73383380_73383485_73383670_73383768_73384036_73384228_73384448_73384619_73385141_73385355_73385526_73385678_73387052
ENSMUSG00000031398.14_21	chrX	+	1875	3	NIC	ENSMUSG00000031398.14	novel	5561	29	NA	NA	-869	-193	intron_retention	FALSE	canonical	3	32	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGGGTCAGTGCATGTC	NA	False	NA	NA	False	ATTAAA	-8	NA	73384323	73388096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_73384619_73385141_73385678_73387052
ENSMUSG00000031398.14_22	chrX	+	689	1	ISM	ENSMUSG00000031398.14	ENSMUST00000004326.4	6943	33	14739	196	2218	-190	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTCAGTGCATGTCTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	73387410	73388099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_73387400_73388100
ENSMUSG00000031399.16_0	chrX	-	1785	9	FSM	ENSMUSG00000031399.16	ENSMUST00000114143.10	1899	9	89	25	-1	17	multi-exon	FALSE	canonical	3	109	junction_1	16.2322017915007	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGTGTATTCAGATGT	NA	False	NA	-31	True	AATAAA	-18	NA	73436789	73428349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
ENSMUSG00000031399.16_1	chrX	-	1479	10	NIC	ENSMUSG00000031399.16	novel	814	9	NA	NA	-36	-15	combination_of_known_junctions	FALSE	canonical	3	22	junction_9	35.9828491381487	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAGATGTCCTCAGTGGA	NA	False	NA	-21	True	AATAAA	-28	NA	73436824	73428339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280_73436354_73436704
ENSMUSG00000031400.11_1	chrX	-	2333	13	FSM	ENSMUSG00000031400.11	ENSMUST00000004327.11	2652	13	314	5	0	-5	multi-exon	FALSE	canonical	3	267	junction_8	19.8990507869653	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTACCTGTCTCCTTGTTC	NA	False	NA	-11	True	ATTAAA	-13	NA	73472486	73453093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
ENSMUSG00000031400.11_3	chrX	-	2335	13	NIC	ENSMUSG00000031400.11	novel	2652	13	NA	NA	-1	-7	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	87.1626831467075	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTACCTGTCTCCTTGT	NA	False	NA	-13	True	ATTAAA	-11	NA	73472487	73453095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456087_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
ENSMUSG00000031402.13_0	chrX	-	1942	12	FSM	ENSMUSG00000031402.13	ENSMUST00000033775.9	2525	12	36	547	6	368	multi-exon	FALSE	canonical	3	210	junction_6	19.4626151487859	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTACCCGTGACCCTGTA	NA	False	NA	-12	True	AATAAA	-15	NA	74174586	74153885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191_74157273_74157839_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
ENSMUSG00000031403.15_0	chrX	+	2579	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	223	2	-9	-2	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	2358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGAATTTGCTTTTCC	NA	False	NA	32	True	ATTAAA	-19	NA	74139682	74153381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_13	chrX	+	2659	16	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-7	-2	combination_of_known_junctions	FALSE	canonical	3	105	junction_1	815.250756243474	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGAATTTGCTTTTCC	NA	False	NA	32	True	ATTAAA	-19	NA	74139684	74153381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_74139734_74140238_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_83	chrX	+	1675	7	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1793	-1	at_least_one_novel_splicesite	FALSE	canonical	3	454	junction_1	848.656143558744	387	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGAATTTGCTTTTCCT	NA	False	NA	33	True	ATTAAA	-20	NA	74147761	74153382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_74147807_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_84	chrX	+	1813	6	ISM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	8302	2	-1793	-2	3prime_fragment	FALSE	canonical	3	2464	junction_5	150.861525910353	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGAATTTGCTTTTCC	NA	False	NA	32	True	ATTAAA	-19	NA	74147761	74153381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031410.15_1	chrX	-	2200	22	NIC	ENSMUSG00000031410.15	novel	2233	23	NA	NA	-3	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	1.0190921218587	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTTCCCTGGATTCTT	NA	False	NA	NA	False	AATAAA	-12	NA	134499529	134480309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_134480575_134480703_134480765_134483832_134484016_134484471_134484539_134485101_134485145_134485235_134485352_134485452_134485512_134485645_134485754_134485889_134485946_134486029_134486099_134486514_134486552_134487985_134488096_134488266_134488375_134488481_134488571_134488715_134488786_134488930_134489012_134489121_134489227_134489324_134489409_134489679_134489831_134490065_134490220_134494561_134494643_134499426
ENSMUSG00000031422.17_0	chrX	-	1780	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	74	5	-2	-5	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	3001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGCAAAAAAAAAAATGTG	NA	False	NA	NA	False	AATAAA	-18	NA	135642027	135633706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
ENSMUSG00000031422.17_2	chrX	-	1216	1	ISM	ENSMUSG00000031422.17	ENSMUST00000033797.13	1996	4	7488	16	6310	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGCAAAAAAAAAAATGTG	NA	False	NA	NA	False	AATAAA	-18	NA	135634922	135633706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_135633700_135634900
ENSMUSG00000031422.17_4	chrX	-	1802	4	FSM	ENSMUSG00000031422.17	ENSMUST00000033797.13	1996	4	178	16	-131	-5	multi-exon	FALSE	canonical	3	68	junction_3	1439.93989072075	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGCAAAAAAAAAAATGTG	NA	False	NA	NA	False	AATAAA	-18	NA	135642232	135633706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135642141
ENSMUSG00000031428.12_0	chrX	+	2270	4	FSM	ENSMUSG00000031428.12	ENSMUST00000101227.3	2045	4	31	-256	31	-6	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTACGGCAGGGGTGT	7936	False	NA	1	True	AATAAA	-17	NA	135893938	135897121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_135894154_135894455_135894511_135894679_135894820_135895261
ENSMUSG00000031428.12_2	chrX	+	2220	4	FSM	ENSMUSG00000031428.12	ENSMUST00000113067.8	2259	4	32	7	28	-7	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAACTACGGCAGGGGTG	7933	False	NA	0	True	AATAAA	-16	NA	135893935	135897120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_135894102_135894455_135894511_135894679_135894820_135895261
ENSMUSG00000031429.15_0	chrX	-	1430	5	FSM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	-4	4	-4	-4	multi-exon	FALSE	canonical	3	522	junction_1	39.0024037720754	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAATCTCCCAATTTCTC	NA	False	NA	-12	True	AATAAA	-7	NA	139857442	139849181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_139850059_139852895_139853063_139853153_139853301_139854548_139854648_139857302
ENSMUSG00000031429.15_2	chrX	-	1347	5	FSM	ENSMUSG00000031429.15	ENSMUST00000112978.2	1390	5	35	8	-4	-8	multi-exon	FALSE	canonical	3	80	junction_1	228.562218006389	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAAAGAATCTCCCAATT	NA	False	NA	-16	True	AATAAA	-3	NA	139857442	139849185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_139850059_139852974_139853063_139853153_139853301_139854548_139854648_139857302
ENSMUSG00000031431.14_0	chrX	-	1962	3	FSM	ENSMUSG00000031431.14	ENSMUST00000055738.12	1974	3	3	9	3	0	multi-exon	FALSE	canonical	3	154	junction_2	61	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAACTTGGTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	139443933	139440285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_139441857_139442853_139442906_139443594
ENSMUSG00000031431.14_1	chrX	-	2128	4	NNC	ENSMUSG00000031431.14	novel	1552	4	NA	NA	1186	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	110.816164083685	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAACTTGGTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	139500222	139440285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_139441857_139442853_139442906_139498876_139499308_139500148
ENSMUSG00000031431.14_3	chrX	-	1773	3	FSM	ENSMUSG00000031431.14	ENSMUST00000112995.3	1790	3	8	9	8	0	multi-exon	FALSE	canonical	3	51	junction_2	112.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAACTTGGTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	139443409	139440285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_139441857_139442853_139442906_139443259
ENSMUSG00000031431.14_4	chrX	-	1148	1	ISM	ENSMUSG00000031431.14	ENSMUST00000112995.3	1790	3	1984	9	1984	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAACTTGGTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	139441433	139440285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_139440300_139441400
ENSMUSG00000031432.4_1	chrX	+	1952	7	FSM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	12	1	12	-1	multi-exon	FALSE	canonical	3	1771	junction_6	191.019850626403	2244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGGTGTACTGTCAT	NA	False	NA	26	True	AATAAA	-18	NA	139357373	139376888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
ENSMUSG00000031433.16_12	chrX	-	2991	5	ISM	ENSMUSG00000031433.16	ENSMUST00000033810.8	2787	7	7	21933	-2	1412	5prime_fragment	FALSE	canonical	3	21	junction_4	5.67890834580027	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTATCACTCTCTTGTA	NA	False	NA	NA	False	AATACA	-36	NA	138899293	138866917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_138869349_138894046_138894252_138894660_138894854_138895860_138895978_138899248
ENSMUSG00000031433.16_13	chrX	-	3040	4	ISM	ENSMUSG00000031433.16	ENSMUST00000033810.8	2787	7	3321	21841	-1148	1504	internal_fragment	FALSE	canonical	3	25	junction_1	4.24264068711928	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGAGTTTTGACTTAGTG	NA	False	NA	NA	False	NA	NA	NA	138895979	138866825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_138869349_138894046_138894252_138894660_138894854_138895860
ENSMUSG00000031433.16_2	chrX	-	5554	8	FSM	ENSMUSG00000031433.16	ENSMUST00000113011.9	3728	8	19	-1845	-2	1845	multi-exon	TRUE	canonical	0	0	junction_3	12.2291054623044	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTTGGAAAGAGATTCAT	NA	False	NA	NA	False	AATAAA	-21	NA	138899287	138842276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_138846653_138855655_138855804_138868944_138869349_138892264_138892337_138894046_138894252_138894660_138894854_138895860_138895978_138899248
ENSMUSG00000031433.16_3	chrX	-	5472	7	FSM	ENSMUSG00000031433.16	ENSMUST00000033810.8	2787	7	14	-2699	-1	1836	multi-exon	FALSE	canonical	3	17	junction_1	6.26276474268531	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAATAGAGATTTGGAAA	NA	False	NA	NA	False	AATAAA	-12	NA	138899286	138842285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_138846653_138855655_138855804_138868944_138869349_138894046_138894252_138894660_138894854_138895860_138895978_138899248
ENSMUSG00000031433.16_8	chrX	-	5436	6	ISM	ENSMUSG00000031433.16	ENSMUST00000113007.8	3691	8	3312	-1868	-1148	1836	3prime_fragment	FALSE	canonical	3	17	junction_1	6.34350061086148	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAATAGAGATTTGGAAA	NA	False	NA	NA	False	AATAAA	-12	NA	138895979	138842285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_138846653_138855655_138855804_138868944_138869349_138894046_138894252_138894660_138894854_138895860
ENSMUSG00000031434.16_0	chrX	-	3990	17	NNC	ENSMUSG00000031434.16	novel	3862	17	NA	NA	2	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	16.8851821133205	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCCAGCCACCGCACAAG	NA	False	NA	-16	True	AGTAAA	-6	NA	138772369	138722468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_138723578_138723878_138724163_138724714_138725394_138735158_138735332_138736684_138736737_138737233_138737303_138738602_138738732_138741446_138741537_138750397_138750499_138752761_138752882_138755158_138755288_138755607_138755741_138758496_138758645_138759546_138759766_138765243_138765377_138771818_138771892_138772020
ENSMUSG00000031434.16_1	chrX	-	4310	16	FSM	ENSMUSG00000031434.16	ENSMUST00000033811.14	4412	16	27	75	-2	-3	multi-exon	FALSE	canonical	0	0	junction_6	16.9972546802908	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAAGTGTTCCATGGTGT	NA	False	NA	-3	True	AGTAAA	-19	NA	138772376	138722455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_138724163_138724714_138725394_138735158_138735332_138736684_138736737_138737233_138737303_138738602_138738732_138741446_138741537_138750397_138750499_138752761_138752882_138755158_138755288_138755607_138755741_138758496_138758645_138759547_138759766_138765243_138765377_138771818_138771892_138772020
ENSMUSG00000031434.16_2	chrX	-	3807	17	FSM	ENSMUSG00000031434.16	ENSMUST00000087401.12	3862	17	53	2	1	-2	multi-exon	FALSE	canonical	0	0	junction_7	16.8851821133205	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGTAGGCTTGAATTTG	NA	False	NA	-14	True	AATAAA	-15	NA	138772373	138722654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_138723578_138723878_138724163_138724714_138725394_138735158_138735332_138736684_138736737_138737233_138737303_138738602_138738732_138741446_138741537_138750397_138750499_138752761_138752882_138755158_138755288_138755607_138755741_138758496_138758645_138759547_138759766_138765243_138765377_138771818_138771892_138772020
ENSMUSG00000031434.16_6	chrX	-	1475	3	ISM	ENSMUSG00000031434.16	ENSMUST00000087401.12	3862	17	47443	3	11869	-3	3prime_fragment	FALSE	canonical	3	25	junction_1	10.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAAGTAGGCTTGAATTT	NA	False	NA	-15	True	AATAAA	-14	NA	138724983	138722655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_138723578_138723878_138724163_138724714
ENSMUSG00000031438.12_0	chrX	+	2734	7	FSM	ENSMUSG00000031438.12	ENSMUST00000113026.2	2750	7	2	14	2	-7	multi-exon	FALSE	canonical	3	69	junction_2	9.49853789918334	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAAGATTGTATCTGGT	NA	False	NA	NA	False	AATAAA	-8	NA	138511370	138573880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_138512039_138543034_138543283_138559564_138559637_138564334_138564418_138565236_138565334_138566120_138566290_138572483
ENSMUSG00000031438.12_6	chrX	+	1181	1	ISM	ENSMUSG00000031438.12	ENSMUST00000113027.8	2641	7	108635	7	60584	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAAGATTGTATCTGGT	NA	False	NA	NA	False	AATAAA	-8	NA	138572699	138573880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_138572700_138573900
ENSMUSG00000031441.16_0	chr8	+	3605	26	ISM	ENSMUSG00000031441.16	ENSMUST00000091237.12	7443	29	38	11450	-15	8	5prime_fragment	FALSE	canonical	3	50	junction_9	10.4079969254415	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTTTTAAAATATCTGT	NA	False	NA	NA	False	AATAAA	-32	NA	12807053	12907278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_12807353_12856649_12856773_12862311_12862402_12863074_12863156_12866907_12867016_12870389_12870519_12872612_12872717_12873001_12873053_12875679_12875745_12876324_12876407_12877447_12877599_12878448_12878647_12881084_12881259_12882508_12882679_12884636_12884709_12885160_12885235_12887911_12888016_12892825_12893008_12894403_12894656_12896040_12896219_12897472_12897576_12897739_12897886_12898802_12898863_12899774_12899903_12901036_12901173_12906933
ENSMUSG00000031441.16_1	chr8	+	5538	30	FSM	ENSMUSG00000031441.16	ENSMUST00000033818.10	7549	30	9	2002	7	1156	multi-exon	FALSE	canonical	3	17	junction_29	16.4441186100344	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAGTATTTTCATAGCT	NA	False	NA	NA	False	NA	NA	NA	12807022	12916726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_12807353_12856649_12856773_12862311_12862402_12863074_12863156_12866907_12867016_12870389_12870519_12872612_12872717_12873001_12873053_12875679_12875745_12876324_12876407_12877447_12877599_12878448_12878647_12881084_12881259_12882508_12882679_12884636_12884709_12885160_12885235_12887911_12888016_12892825_12893008_12894403_12894656_12896040_12896219_12897472_12897576_12897739_12897886_12898802_12898863_12899774_12899903_12901036_12901173_12906933_12907000_12907882_12907987_12909313_12909480_12913758_12913863_12914919
ENSMUSG00000031441.16_12	chr8	+	3365	26	NIC	ENSMUSG00000031441.16	novel	7443	29	NA	NA	21	-4	combination_of_known_junctions	FALSE	canonical	1	1	junction_25	17.1588344592516	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATTTTCAAATGTGAC	NA	False	NA	NA	False	AATAAA	-11	NA	12807036	12901720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_12807353_12856649_12856773_12862311_12862402_12863074_12863156_12866907_12867016_12870389_12870519_12872612_12872717_12873001_12873053_12875679_12875745_12876324_12876407_12877447_12877599_12878448_12878647_12881084_12881259_12882508_12882679_12884636_12884709_12885160_12885235_12887911_12888016_12892825_12893008_12894403_12894656_12896040_12896219_12897472_12897576_12897739_12897886_12898802_12898863_12899774_12899903_12901036_12901173_12901632
ENSMUSG00000031441.16_2	chr8	+	7489	30	NIC	ENSMUSG00000031441.16	novel	7549	30	NA	NA	-16	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_29	16.6168259924755	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCGAGGTTTATTTTGC	NA	False	NA	-1	True	ATTAAA	-13	NA	12807052	12918726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_12807353_12856649_12856773_12862311_12862402_12863074_12863156_12866907_12867016_12870389_12870519_12872612_12872717_12873001_12873053_12875679_12875745_12876324_12876407_12877447_12877599_12878448_12878647_12881084_12881259_12882508_12882679_12884636_12884709_12885160_12885235_12887911_12888016_12892825_12893008_12894403_12894656_12896040_12896219_12897472_12897576_12897739_12897886_12898802_12898863_12899774_12899903_12901036_12901173_12906933_12907000_12907882_12907987_12909313_12909480_12911639_12911725_12914919
ENSMUSG00000031441.16_4	chr8	+	3836	25	ISM	ENSMUSG00000031441.16	ENSMUST00000091237.12	7443	29	21	16997	21	7	5prime_fragment	FALSE	canonical	3	50	junction_9	10.6092203085597	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGACCTCTTCTGTGT	NA	False	NA	NA	False	AATAAA	-22	NA	12807036	12901731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_12807353_12856649_12856773_12862311_12862402_12863074_12863156_12866907_12867016_12870389_12870519_12872612_12872717_12873001_12873053_12875679_12875745_12876324_12876407_12877447_12877599_12878448_12878647_12881084_12881259_12882508_12882679_12884636_12884709_12885160_12885235_12887911_12888016_12892825_12893008_12894403_12894656_12896040_12896219_12897472_12897576_12897739_12897886_12898802_12898863_12899774_12899903_12901036
ENSMUSG00000031441.16_41	chr8	+	3121	1	ISM	ENSMUSG00000031441.16	ENSMUST00000033818.10	7549	30	108586	8	4035	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACGTCTCCCGAGGTTTA	NA	False	NA	-7	True	ATTAAA	-7	NA	12915599	12918720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_12915600_12918700
ENSMUSG00000031441.16_5	chr8	+	7394	29	FSM	ENSMUSG00000031441.16	ENSMUST00000091237.12	7443	29	39	10	-14	-10	multi-exon	FALSE	canonical	3	7	junction_28	15.8999983955846	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACGTCTCCCGAGGTT	NA	False	NA	-9	True	ATTAAA	-5	NA	12807054	12918718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_12807353_12856649_12856773_12862311_12862402_12863074_12863156_12866907_12867016_12870389_12870519_12872612_12872717_12873001_12873053_12875679_12875745_12876324_12876407_12877447_12877599_12878448_12878647_12881084_12881259_12882508_12882679_12884636_12884709_12885160_12885235_12887911_12888016_12892825_12893008_12894403_12894656_12896040_12896219_12897472_12897576_12897739_12897886_12898802_12898863_12899774_12899903_12901036_12901173_12906933_12907000_12907882_12907987_12909313_12909480_12914919
ENSMUSG00000031441.16_7	chr8	+	3897	29	NIC	ENSMUSG00000031441.16	novel	7443	29	NA	NA	26	-2	combination_of_known_junctions	FALSE	canonical	3	30	junction_28	12.9998037661798	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTTCTGTGATGTGCT	NA	False	NA	5	True	AATAAA	-12	NA	12807041	12912200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_12807353_12856649_12856773_12862311_12862402_12863074_12863156_12866907_12867016_12870389_12870519_12872612_12872717_12873001_12873053_12875679_12875745_12876324_12876407_12877447_12877599_12878448_12878647_12881084_12881259_12882508_12882679_12884636_12884709_12885160_12885235_12887911_12888016_12892825_12893008_12894403_12894656_12896040_12896219_12897472_12897576_12897739_12897886_12898802_12898863_12899774_12899903_12901036_12901173_12906933_12907000_12907882_12907987_12909313_12909480_12911911
ENSMUSG00000031442.22_10	chr8	+	5050	29	ISM	ENSMUSG00000031442.22	ENSMUST00000110879.9	3664	30	-59	-1188	5	-4	intron_retention	FALSE	canonical	2	4	junction_1	7.42548012602827	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTCAGTAGCATTTCT	NA	False	NA	7	True	AATAAA	-14	NA	12965915	13070497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_12966055_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695
ENSMUSG00000031442.22_11	chr8	+	5032	30	FSM	ENSMUSG00000031442.22	ENSMUST00000110879.9	3664	30	-180	-1188	-98	-4	multi-exon	FALSE	canonical	2	4	junction_1	8.71015643993181	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTCAGTAGCATTTCT	NA	False	NA	7	True	AATAAA	-14	NA	12965794	13070497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_12966055_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695_13068800_13068938
ENSMUSG00000031442.22_12	chr8	+	5198	29	NIC	ENSMUSG00000031442.22	novel	3215	28	NA	NA	-185	-4	intron_retention	FALSE	canonical	2	7	junction_1	7.04604028327041	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTCAGTAGCATTTCT	NA	False	NA	7	True	AATAAA	-14	NA	12976446	13070497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_12976734_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695
ENSMUSG00000031442.22_17	chr8	+	3650	18	ISM	ENSMUSG00000031442.22	ENSMUST00000110866.9	5108	29	52348	15	1073	-15	3prime_fragment	FALSE	canonical	3	22	junction_1	5.92046477180524	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGTGCAAAGACTCA	9048	False	NA	-4	True	AATAAA	-3	NA	13051831	13070486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695
ENSMUSG00000031442.22_2	chr8	+	5256	30	FSM	ENSMUSG00000031442.22	ENSMUST00000095456.10	3926	30	114	-1444	-7	-4	multi-exon	FALSE	canonical	3	19	junction_2	5.78098074781942	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTCAGTAGCATTTCT	8018	False	NA	7	True	AATAAA	-14	NA	12923940	13070497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_12924017_12929881_12930151_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695
ENSMUSG00000031442.22_21	chr8	+	1049	1	ISM	ENSMUSG00000031442.22	ENSMUST00000173099.8	6081	28	104193	408	2273	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTCAGTAGCATTTCT	754	False	NA	7	True	AATAAA	-14	NA	13069448	13070497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_13069400_13070500
ENSMUSG00000031442.22_3	chr8	+	5288	30	NIC	ENSMUSG00000031442.22	novel	3926	30	NA	NA	6	-4	intron_retention	FALSE	canonical	3	6	junction_1	7.385430913229	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTCAGTAGCATTTCT	8031	False	NA	7	True	AATAAA	-14	NA	12923953	13070497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_12924062_12929881_12930151_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695
ENSMUSG00000031442.22_4	chr8	+	5113	31	NIC	ENSMUSG00000031442.22	novel	3926	30	NA	NA	-3	-4	combination_of_known_junctions	FALSE	canonical	2	5	junction_30	7.40577852460871	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTCAGTAGCATTTCT	8022	False	NA	7	True	AATAAA	-14	NA	12923944	13070497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_12924017_12929881_12930151_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695_13068800_13068938
ENSMUSG00000031442.22_6	chr8	+	1376	3	FSM	ENSMUSG00000031442.22	ENSMUST00000138387.2	385	3	-136	-855	6	855	multi-exon	FALSE	canonical	0	0	junction_2	13.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAAACACATACGTGTG	7889	False	NA	NA	False	TTTAAA	-37	NA	12923811	12940963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_12924017_12929881_12930151_12940061
ENSMUSG00000031442.22_8	chr8	+	5167	29	ISM	ENSMUSG00000031442.22	ENSMUST00000095456.10	3926	30	6055	-1431	5934	-17	3prime_fragment	FALSE	canonical	3	19	junction_1	5.82077121617234	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAACGTGCAAAGACT	3573	False	NA	-6	True	AATAAA	-1	NA	12929881	13070484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_12930151_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695
ENSMUSG00000031446.15_1	chr8	+	3603	20	NNC	ENSMUSG00000031446.15	novel	3728	20	NA	NA	0	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_16	89.7106768459931	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATTACTTTACTAATAC	NA	False	NA	21	True	AATAAA	-18	NA	13155739	13197935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_13155904_13156193_13156310_13165469_13165574_13171676_13171747_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709_13177778_13183122_13183242_13183648_13183842_13185864_13185970_13186132_13186244_13186335_13186422_13186795_13186904_13190202_13190316_13192492_13192599_13192961_13193135_13194276_13194430_13196531
ENSMUSG00000031446.15_2	chr8	+	3606	20	FSM	ENSMUSG00000031446.15	ENSMUST00000016680.14	3728	20	117	5	-2	-5	multi-exon	TRUE	canonical	2	216	junction_3	44.2424070515772	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATTACTTTACTAATAC	NA	False	NA	21	True	AATAAA	-18	NA	13155737	13197935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13155904_13156193_13156310_13165469_13165574_13171676_13171747_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709_13177778_13183122_13183242_13183648_13183842_13185864_13185970_13186132_13186244_13186335_13186422_13186795_13186904_13190202_13190317_13192492_13192599_13192961_13193135_13194276_13194430_13196531
ENSMUSG00000031447.8_2	chr8	+	2124	9	FSM	ENSMUSG00000031447.8	ENSMUST00000033824.8	2229	9	97	8	97	-8	multi-exon	FALSE	canonical	3	2416	junction_1	214.397848636594	3686	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGGACGTGTCCT	8299	False	NA	13	True	AATAAA	-14	NA	13209257	13225330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13209435_13215848_13215968_13217157_13217378_13217806_13217966_13221204_13221384_13222540_13222661_13223626_13223694_13223779_13223951_13224418
ENSMUSG00000031448.13_0	chr8	-	1363	7	FSM	ENSMUSG00000031448.13	ENSMUST00000033825.11	1372	7	2	7	2	-7	multi-exon	TRUE	canonical	1	1	junction_2	0.942809041582063	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAATATTTTTCCTCAC	2500	False	NA	NA	False	TATAAA	-13	NA	13304160	13285661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_13285989_13292251_13292385_13292518_13292647_13295468_13295610_13296041_13296168_13298552_13298718_13303817
ENSMUSG00000031451.7_1	chr8	-	2571	15	FSM	ENSMUSG00000031451.7	ENSMUST00000033828.7	2548	15	-25	2	-25	-2	multi-exon	FALSE	canonical	3	43	junction_8	9.27719389312373	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTGTGTTGGTCACTGT	5735	False	NA	-1	True	AATAAA	-21	NA	13544515	13515375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_13515901_13516626_13516856_13518191_13518365_13520218_13520388_13521448_13521614_13524656_13524847_13525038_13525158_13526111_13526234_13527043_13527167_13528251_13528375_13529006_13529130_13533673_13533737_13535670_13535696_13543845_13544013_13544260
ENSMUSG00000031451.7_17	chr8	-	1737	9	ISM	ENSMUSG00000031451.7	ENSMUST00000033828.7	2548	15	17400	4	17400	-4	3prime_fragment	FALSE	canonical	3	43	junction_8	9.27277601368652	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACCCTGTGTTGGTCACT	NA	False	NA	-3	True	AATAAA	-19	NA	13527090	13515377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_13515901_13516626_13516856_13518191_13518365_13520218_13520388_13521448_13521614_13524656_13524847_13525038_13525158_13526111_13526234_13527043
ENSMUSG00000031451.7_19	chr8	-	2126	12	ISM	ENSMUSG00000031451.7	ENSMUST00000033828.7	2548	15	10752	2	10752	-2	3prime_fragment	FALSE	canonical	3	43	junction_8	9.79120874024455	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTGTGTTGGTCACTGT	NA	False	NA	-1	True	AATAAA	-21	NA	13533738	13515375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_13515901_13516626_13516856_13518191_13518365_13520218_13520388_13521448_13521614_13524656_13524847_13525038_13525158_13526111_13526234_13527043_13527167_13528251_13528375_13529006_13529130_13533673
ENSMUSG00000031453.17_0	chr8	-	636	1	ISM	ENSMUSG00000031453.17	ENSMUST00000117551.4	4404	24	109750	270	10190	-268	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGAGTGGTTTGGATT	NA	False	NA	-2	True	ATTAAA	-18	NA	13617853	13617217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_13617200_13617900
ENSMUSG00000031453.17_1	chr8	-	4115	24	FSM	ENSMUSG00000031453.17	ENSMUST00000117551.4	4404	24	19	270	19	-268	multi-exon	FALSE	canonical	3	46	junction_3	7.20402114134286	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGAGTGGTTTGGATT	NA	False	NA	-2	True	ATTAAA	-18	NA	13727584	13617217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_13618767_13620238_13620423_13626336_13626441_13627359_13627569_13627806_13627890_13628607_13628715_13630033_13630108_13631250_13631329_13632298_13632377_13633749_13633857_13634912_13635037_13635673_13635749_13636873_13636989_13637951_13638101_13638863_13639021_13640201_13640307_13642003_13642081_13645334_13645408_13645808_13645890_13648213_13648291_13655861_13655957_13664533_13664638_13681774_13681893_13727392
ENSMUSG00000031453.17_23	chr8	-	3167	21	ISM	ENSMUSG00000031453.17	ENSMUST00000117551.4	4404	24	11	9531	11	991	5prime_fragment	FALSE	canonical	3	48	junction_6	6.62947961758689	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACATTCACCGTTTTGTC	NA	False	NA	NA	False	CATAAA	-14	NA	13727592	13626478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_13627569_13627806_13627890_13628607_13628715_13630033_13630108_13631250_13631329_13632298_13632377_13633749_13633857_13634912_13635037_13635673_13635749_13636873_13636989_13637951_13638101_13638863_13639021_13640201_13640307_13642003_13642081_13645334_13645408_13645808_13645890_13648213_13648291_13655861_13655957_13664533_13664638_13681774_13681893_13727392
ENSMUSG00000031458.9_0	chr8	-	782	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	7	4	7	-4	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACCTAGTATGCTCTGTC	NA	False	NA	-12	True	AATAAA	-12	NA	13940261	13934797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
ENSMUSG00000031458.9_6	chr8	-	3117	3	ISM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	8	8	8	-8	intron_retention	FALSE	canonical	0	0	junction_2	328.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCACCTAGTATGCTC	NA	False	NA	-16	True	AATAAA	-8	NA	13940260	13934801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_13935202_13935665_13935882_13937759
ENSMUSG00000031458.9_7	chr8	-	1326	1	Genic_Genomic	ENSMUSG00000031458.9	novel	NA	NA	NA	NA	1099	3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATGCTCTGTCTGCGTCT	NA	False	NA	-5	True	AATAAA	-19	NA	13936116	13934790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_13934800_13936100
ENSMUSG00000031461.5_1	chr8	+	4570	33	ISM	ENSMUSG00000031461.5	ENSMUST00000033842.4	5075	37	11865	135	9328	-135	3prime_fragment	FALSE	canonical	0	0	junction_1	0.649519052838329	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCAAAAGGCATCTTGT	NA	False	NA	NA	False	NA	NA	NA	15119517	15183406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_15119806_15120671_15120765_15127818_15127908_15127996_15128048_15130858_15131024_15131261_15131424_15133229_15133372_15134460_15134661_15135260_15135315_15148341_15148470_15149174_15149359_15152482_15152658_15154066_15154189_15156279_15156468_15158362_15158490_15158765_15158945_15160747_15160863_15161718_15161876_15161959_15162067_15163745_15163791_15164149_15164287_15167596_15167742_15167872_15167933_15169220_15169289_15172355_15172470_15172641_15172730_15173397_15173437_15175116_15175223_15178769_15178934_15179133_15179171_15180634_15180658_15181125_15181182_15182644
ENSMUSG00000031467.11_1	chr8	+	2780	8	FSM	ENSMUSG00000031467.11	ENSMUST00000149565.8	10779	8	46	7953	44	-13	multi-exon	FALSE	canonical	3	636	junction_4	34.1778063804509	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAGGGAAAATTTGCTT	NA	False	NA	2	True	AATAAA	-12	NA	18896338	18933424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929745_18931753
ENSMUSG00000031467.11_4	chr8	+	3120	7	NIC	ENSMUSG00000031467.11	novel	10779	8	NA	NA	226	-1367	intron_retention	FALSE	canonical	3	636	junction_4	36.4783040541452	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTTTGTTTTGTTTTG	NA	False	NA	16	True	ATTAAA	-20	NA	18896520	18932070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18928185_18929620_18929745_18931753
ENSMUSG00000031478.17_0	chr8	-	2027	16	FSM	ENSMUSG00000031478.17	ENSMUST00000033865.16	2021	16	-10	4	-10	-1	multi-exon	FALSE	canonical	3	19	junction_15	6.34350061086148	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACCGTGTGTGCTGGTTT	NA	False	NA	-2	True	AATACA	-13	NA	22656438	22618302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622210_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642_22648727_22650207_22650306_22650385_22650474_22652339_22652511_22656393
ENSMUSG00000031478.17_2	chr8	-	1583	12	ISM	ENSMUSG00000031478.17	ENSMUST00000033865.16	2021	16	7744	4	3826	-1	3prime_fragment	FALSE	canonical	3	27	junction_10	5.99724454635296	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACCGTGTGTGCTGGTTT	4748	False	NA	-2	True	AATACA	-13	NA	22648684	22618302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622210_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642
ENSMUSG00000031478.17_6	chr8	-	2033	16	FSM	ENSMUSG00000031478.17	ENSMUST00000110730.10	2050	16	13	4	-10	-1	multi-exon	FALSE	canonical	1	3	junction_4	9.555917305814	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACCGTGTGTGCTGGTTT	NA	False	NA	-2	True	AATACA	-13	NA	22656438	22618302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622216_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642_22648727_22650207_22650306_22650385_22650474_22652339_22652511_22656393
ENSMUSG00000031479.10_0	chr8	+	1336	14	FSM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	27	2211	27	0	multi-exon	TRUE	canonical	3	316	junction_5	36.370219952707	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGGTCTCAGAAACT	NA	False	NA	22	True	TATAAA	-17	NA	22682851	22708648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
ENSMUSG00000031479.10_20	chr8	+	1839	1	ISM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	26186	10	2002	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAGCCAATGTGGGAATT	2381	False	NA	-1	True	GATAAA	-12	NA	22709010	22710849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_22709000_22710800
ENSMUSG00000031480.16_1	chr8	+	2308	2	ISM	ENSMUSG00000031480.16	ENSMUST00000160585.2	3276	4	15914	478	15897	-476	3prime_fragment	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTATGATGCATTTTGA	NA	False	NA	NA	False	AATAAA	-14	NA	22733274	22749917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_22733973_22748307
ENSMUSG00000031480.16_2	chr8	+	2462	3	ISM	ENSMUSG00000031480.16	ENSMUST00000162447.2	3273	4	15902	476	15902	-476	3prime_fragment	FALSE	canonical	2	2	junction_2	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTATGATGCATTTTGA	NA	False	NA	NA	False	AATAAA	-14	NA	22733279	22749917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_22733973_22742168_22742328_22748307
ENSMUSG00000031480.16_3	chr8	+	2802	4	FSM	ENSMUSG00000031480.16	ENSMUST00000160585.2	3276	4	-13	487	-13	-485	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAGGCAAATTTATGAT	NA	False	NA	NA	False	AATAAA	-5	NA	22717347	22749908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_22717446_22728470_22728614_22733012_22733973_22748307
ENSMUSG00000031482.10_1	chr8	-	3396	7	FSM	ENSMUSG00000031482.10	ENSMUST00000033871.8	3430	7	31	3	-22	-3	multi-exon	FALSE	canonical	3	211	junction_4	26.1002341411379	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCTCTGGTCGTAG	NA	False	NA	-9	True	NA	NA	NA	22888582	22865569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879829_22880089_22885728_22885844_22888455
ENSMUSG00000031482.10_3	chr8	-	1944	1	ISM	ENSMUSG00000031482.10	ENSMUST00000033871.8	3430	7	21100	3	21047	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCTCTGGTCGTAG	NA	False	NA	-9	True	NA	NA	NA	22867513	22865569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_22865600_22867500
ENSMUSG00000031482.10_6	chr8	-	3262	7	NNC	ENSMUSG00000031482.10	novel	3430	7	NA	NA	22	-3	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	87.5893194909567	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCTCTGGTCGTAG	NA	False	NA	-9	True	NA	NA	NA	22888591	22865569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879972_22880089_22885728_22885844_22888455
ENSMUSG00000031483.9_0	chr8	+	3897	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	36	905	28	-905	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTAAGGTAAAATTTACC	NA	False	NA	21	True	AATAAA	-18	NA	27513862	27529451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
ENSMUSG00000031483.9_27	chr8	+	2229	1	ISM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	13396	905	5873	-905	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTAAGGTAAAATTTACC	NA	False	NA	21	True	AATAAA	-18	NA	27527222	27529451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_27527200_27529500
ENSMUSG00000031483.9_6	chr8	+	4084	12	NIC	ENSMUSG00000031483.9	novel	940	10	NA	NA	6	-905	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	86.8177534496809	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTAAGGTAAAATTTACC	NA	False	NA	21	True	AATAAA	-18	NA	27513934	27529451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_27514194_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
ENSMUSG00000031485.16_0	chr8	+	2523	9	NNC	ENSMUSG00000031485.16	novel	3603	8	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	3	86	junction_8	57.907253431673	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTATGCGTGTGGGTGTT	NA	False	NA	24	True	AATAAA	-16	NA	27532630	27546159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313_27544055_27545085
ENSMUSG00000031485.16_1	chr8	+	1985	8	FSM	ENSMUSG00000031485.16	ENSMUST00000033875.10	3603	8	50	1568	7	-1	multi-exon	FALSE	canonical	3	235	junction_4	11.5881713089561	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATCTGGTGTGATGAGTG	NA	False	NA	10	True	ATTAAA	-12	NA	27532632	27544592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
ENSMUSG00000031486.16_0	chr8	+	1974	8	ISM	ENSMUSG00000031486.16	ENSMUST00000178514.8	5129	16	-25	10439	-25	-8627	5prime_fragment	FALSE	canonical	3	17	junction_4	4.03049599419025	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATCAAAATAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	27575585	27603024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_27576240_27588813_27588886_27599355_27599428_27599728_27599801_27599968_27600041_27600462_27600627_27601079_27601294_27602370
ENSMUSG00000031486.16_10	chr8	+	5856	19	FSM	ENSMUSG00000031486.16	ENSMUST00000033876.14	5760	19	-105	9	-90	-8	multi-exon	FALSE	canonical	1	1	junction_15	8.55699843532896	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCGACAGCTGTCGCCCA	NA	False	NA	NA	False	ATTAAA	-17	NA	27575520	27613455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_27576240_27588813_27588886_27599355_27599428_27599728_27599801_27599968_27600041_27600462_27600627_27601079_27601294_27602370_27602536_27603313_27603513_27604107_27604258_27604372_27604535_27605264_27605490_27605682_27605903_27607343_27607544_27608751_27608880_27609161_27609286_27609733_27609880_27610474_27610565_27610793
ENSMUSG00000031486.16_11	chr8	+	2778	14	ISM	ENSMUSG00000031486.16	ENSMUST00000033876.14	5760	19	-47	5791	-32	-3978	5prime_fragment	FALSE	canonical	1	2	junction_10	9.1282771532739	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTGTGCTCTGCTGATG	NA	False	NA	NA	False	AATAAA	-12	NA	27575578	27607673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_27576240_27588813_27588886_27599355_27599428_27599728_27599801_27599968_27600041_27600462_27600627_27601079_27601294_27602370_27602536_27603313_27603513_27604107_27604258_27604372_27604535_27605264_27605490_27605682_27605903_27607343
ENSMUSG00000031486.16_7	chr8	+	4438	12	ISM	ENSMUSG00000031486.16	ENSMUST00000033876.14	5760	19	26769	18	-1766	-17	3prime_fragment	FALSE	canonical	1	1	junction_8	1.83176742541908	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCTTTGAGCGACAGC	NA	False	NA	NA	False	ATTAAA	-8	NA	27602394	27613446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_27602536_27603313_27603513_27604107_27604258_27604372_27604535_27605264_27605490_27605682_27605903_27607343_27607544_27608751_27608880_27609161_27609286_27609733_27609880_27610474_27610565_27610793
ENSMUSG00000031486.16_9	chr8	+	1489	1	ISM	ENSMUSG00000031486.16	ENSMUST00000178514.8	5129	16	36347	17	4561	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCTTTGAGCGACAGC	NA	False	NA	NA	False	ATTAAA	-8	NA	27611957	27613446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_27612000_27613400
ENSMUSG00000031487.6_0	chr8	-	1392	4	FSM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	39	468	-9	373	multi-exon	FALSE	canonical	3	75	junction_1	8.9938250421547	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATGACTCTTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	27618669	27613859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618448
ENSMUSG00000031488.15_0	chr8	-	4331	5	FSM	ENSMUSG00000031488.15	ENSMUST00000033878.14	3217	5	3	-1117	-2	1117	multi-exon	FALSE	canonical	3	63	junction_1	8.6421930087218	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGATCTCTGAAAATGTA	NA	False	NA	59	True	TATAAA	-13	NA	27664671	27630868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_27633423_27640722_27640832_27644173_27644964_27646254_27646698_27664236
ENSMUSG00000031488.15_1	chr8	-	669	1	ISM	ENSMUSG00000031488.15	ENSMUST00000054212.7	7965	6	34672	533	14502	-533	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAGAGAGAGAGAGCTGA	NA	False	NA	NA	False	NA	NA	NA	27630002	27629333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_27629300_27630000
ENSMUSG00000031488.15_2	chr8	-	1582	1	ISM	ENSMUSG00000031488.15	ENSMUST00000054212.7	7965	6	32234	2058	12064	1127	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATGTACATGTATATT	NA	False	NA	69	True	TATAAA	-23	NA	27632440	27630858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_27630900_27632400
ENSMUSG00000031488.15_3	chr8	-	3732	4	ISM	ENSMUSG00000031488.15	ENSMUST00000033878.14	3217	5	18143	-1119	-2027	1119	3prime_fragment	FALSE	canonical	3	63	junction_1	5.73488351136175	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGATCTCTGAAAATGTACA	NA	False	NA	61	True	TATAAA	-15	NA	27646531	27630866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_27633423_27640722_27640832_27644173_27644964_27646254
ENSMUSG00000031488.15_7	chr8	-	3707	6	FSM	ENSMUSG00000031488.15	ENSMUST00000054212.7	7965	6	4	4254	-1	1	multi-exon	FALSE	canonical	3	14	junction_2	30.9283041888817	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTCCCAGCGTTTTGTT	NA	False	NA	-2	True	NA	NA	NA	27664670	27633054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_27633423_27640722_27640832_27641624_27643188_27644173_27644964_27646254_27646698_27664236
ENSMUSG00000031489.16_0	chr8	-	1302	3	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	611	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	38.5	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27717911	27715803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_27716411_27716753_27716822_27717284
ENSMUSG00000031489.16_1	chr8	-	1497	3	FSM	ENSMUSG00000031489.16	ENSMUST00000121838.2	1864	3	592	-225	503	0	multi-exon	FALSE	canonical	3	73	junction_1	27.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27718019	27715803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_27716498_27716753_27716822_27717284
ENSMUSG00000031489.16_14	chr8	-	1160	3	NIC	ENSMUSG00000031489.16	novel	1864	3	NA	NA	941	-2	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	26.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTGTCCCCTGCTCGCC	NA	False	NA	-14	True	AATAAA	-13	NA	27717581	27715805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_27716498_27716753_27716925_27717284
ENSMUSG00000031489.16_15	chr8	-	1517	3	ISM	ENSMUSG00000031489.16	ENSMUST00000081438.10	2795	4	1635	1	541	-1	3prime_fragment	FALSE	canonical	1	3	junction_1	62.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTGTCCCCTGCTCGCCT	NA	False	NA	-13	True	AATAAA	-14	NA	27717981	27715804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_27716557_27716753_27716822_27717284
ENSMUSG00000031489.16_16	chr8	-	1650	2	NIC	ENSMUSG00000031489.16	novel	1864	3	NA	NA	604	-2	intron_retention	FALSE	canonical	3	128	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTGTCCCCTGCTCGCC	NA	False	NA	-14	True	AATAAA	-13	NA	27717918	27715805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_27716822_27717284
ENSMUSG00000031489.16_21	chr8	-	5112	2	ISM	ENSMUSG00000031489.16	ENSMUST00000211346.2	669	4	-246	16012	-246	-15235	5prime_fragment	FALSE	canonical	3	31	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGCCTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	27740890	27734498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_27739238_27740517
ENSMUSG00000031489.16_6	chr8	-	3897	4	NIC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	75	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_3	42.4813684650891	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27720777	27715803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_27716498_27716753_27716822_27717284_27718779_27719136
ENSMUSG00000031490.7_5	chr8	+	788	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	49	1160	49	16	multi-exon	FALSE	canonical	3	14377	junction_1	319.5	4701	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCGCCCACAGCTGGGC	NA	False	NA	16	True	AATAAA	-16	NA	27750405	27765542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_27750579_27763350_27763531_27765107
ENSMUSG00000031502.12_12	chr8	-	3913	22	ISM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	91759	103	-3798	-95	3prime_fragment	FALSE	canonical	3	52	junction_19	8.06267962411309	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAATGAAGCTTTTATG	8607	False	NA	NA	False	AATAAA	-10	NA	11271067	11248525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_11249883_11251657_11251831_11252893_11253009_11256225_11256404_11257193_11257407_11258232_11258332_11259521_11259651_11260759_11260832_11261763_11261837_11262601_11262736_11263503_11263690_11264651_11264703_11266700_11266800_11267264_11267346_11267433_11267561_11267912_11268053_11268680_11268771_11268868_11268968_11269079_11269233_11269986_11270077_11270208_11270377_11270981
ENSMUSG00000031502.12_14	chr8	-	4069	23	ISM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	91412	101	-4145	-93	3prime_fragment	FALSE	canonical	3	52	junction_19	8.22915598736971	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGAAGCTTTTATGGA	8260	False	NA	NA	False	AATAAA	-12	NA	11271414	11248523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_11249883_11251657_11251831_11252893_11253009_11256225_11256404_11257193_11257407_11258232_11258332_11259521_11259651_11260759_11260832_11261763_11261837_11262601_11262736_11263503_11263690_11264651_11264703_11266700_11266800_11267264_11267346_11267433_11267561_11267912_11268053_11268680_11268771_11268868_11268968_11269079_11269233_11269986_11270077_11270208_11270377_11270981_11271096_11271288
ENSMUSG00000031502.12_2	chr8	-	6443	52	FSM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	70	102	-67	-94	multi-exon	FALSE	canonical	3	33	junction_49	11.4163456879082	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGAAGCTTTTATGG	NA	False	NA	NA	False	AATAAA	-11	NA	11362756	11248524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_11249883_11251657_11251831_11252893_11253009_11256225_11256404_11257193_11257407_11258232_11258332_11259521_11259651_11260759_11260832_11261763_11261837_11262601_11262736_11263503_11263690_11264651_11264703_11266700_11266800_11267264_11267346_11267433_11267561_11267912_11268053_11268680_11268771_11268868_11268968_11269079_11269233_11269986_11270077_11270208_11270377_11270981_11271096_11271288_11271440_11272195_11272294_11272998_11273104_11273575_11273669_11276324_11276494_11276949_11277142_11281397_11281469_11281946_11282031_11283827_11283924_11285094_11285260_11286051_11286088_11286425_11286511_11287844_11287887_11288997_11289052_11289133_11289179_11289826_11289878_11290040_11290068_11291121_11291209_11292172_11292215_11292781_11292818_11294340_11294404_11294485_11294570_11295057_11295085_11295210_11295265_11295736_11295800_11295892_11295938_11296862_11296908_11297005_11297096_11317596_11317657_11362515
ENSMUSG00000031502.12_20	chr8	-	3820	21	ISM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	92451	109	-3106	-101	3prime_fragment	FALSE	canonical	3	52	junction_19	8.24302735649955	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTGTATAAAAATGAAGCT	9299	False	NA	NA	False	AATAAA	-4	NA	11270375	11248531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_11249883_11251657_11251831_11252893_11253009_11256225_11256404_11257193_11257407_11258232_11258332_11259521_11259651_11260759_11260832_11261763_11261837_11262601_11262736_11263503_11263690_11264651_11264703_11266700_11266800_11267264_11267346_11267433_11267561_11267912_11268053_11268680_11268771_11268868_11268968_11269079_11269233_11269986_11270077_11270208
ENSMUSG00000031502.12_3	chr8	-	6456	52	NNC	ENSMUSG00000031502.12	novel	6615	52	NA	NA	55	-95	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_38	13.60544138832	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAATGAAGCTTTTATG	NA	False	NA	NA	False	AATAAA	-10	NA	11362771	11248525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_11249883_11251657_11251831_11252893_11253009_11256225_11256404_11257193_11257407_11258232_11258332_11259521_11259651_11260759_11260832_11261763_11261837_11262601_11262736_11263503_11263690_11264651_11264703_11266700_11266800_11267264_11267346_11267433_11267561_11267912_11268053_11268680_11268771_11268868_11268968_11269079_11269233_11269986_11270077_11270208_11270377_11270981_11271096_11271288_11271440_11272195_11272294_11272998_11273104_11273575_11273669_11276324_11276494_11276949_11277142_11281397_11281469_11281946_11282031_11283827_11283924_11285094_11285260_11286051_11286088_11286425_11286511_11287844_11287887_11288997_11289052_11289133_11289179_11289826_11289877_11290040_11290068_11291121_11291209_11292172_11292215_11292781_11292818_11294340_11294404_11294485_11294570_11295057_11295085_11295210_11295265_11295736_11295800_11295892_11295938_11296862_11296908_11297005_11297096_11317596_11317657_11362515
ENSMUSG00000031502.12_35	chr8	-	2435	10	ISM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	100200	102	-1795	-94	3prime_fragment	FALSE	canonical	3	62	junction_2	6.5734219812218	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGAAGCTTTTATGG	5012	False	NA	NA	False	AATAAA	-11	NA	11262626	11248524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_11249883_11251657_11251831_11252893_11253009_11256225_11256404_11257193_11257407_11258232_11258332_11259521_11259651_11260759_11260832_11261763_11261837_11262601
ENSMUSG00000031502.12_5	chr8	-	4466	27	ISM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	86424	103	6037	-95	3prime_fragment	FALSE	canonical	3	50	junction_26	8.93707456470785	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAATGAAGCTTTTATG	5683	False	NA	NA	False	AATAAA	-10	NA	11276402	11248525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_11249883_11251657_11251831_11252893_11253009_11256225_11256404_11257193_11257407_11258232_11258332_11259521_11259651_11260759_11260832_11261763_11261837_11262601_11262736_11263503_11263690_11264651_11264703_11266700_11266800_11267264_11267346_11267433_11267561_11267912_11268053_11268680_11268771_11268868_11268968_11269079_11269233_11269986_11270077_11270208_11270377_11270981_11271096_11271288_11271440_11272195_11272294_11272998_11273104_11273575_11273669_11276324
ENSMUSG00000031503.14_12	chr8	+	5587	41	ISM	ENSMUSG00000031503.14	ENSMUST00000033899.14	6450	48	89387	2	-2716	-2	3prime_fragment	FALSE	canonical	3	16	junction_9	6.43384605038075	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTATGTTTTCTGTCCCCC	3152	False	NA	8	True	AATAAA	-18	NA	11452191	11499285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_11452235_11452983_11453020_11453341_11453405_11454963_11455000_11456812_11456855_11458051_11458145_11458881_11458918_11459421_11459473_11460054_11460100_11463978_11464033_11464741_11464809_11465363_11465475_11465925_11466076_11470576_11470670_11471167_11471323_11473551_11473625_11473716_11473824_11475338_11475541_11475928_11475989_11477006_11477064_11477552_11477661_11479306_11479529_11481239_11481402_11483653_11483825_11484627_11484772_11487586_11487710_11487923_11488106_11488353_11488418_11488554_11488630_11488946_11489055_11489305_11489414_11490378_11490451_11491221_11491348_11491879_11491997_11493070_11493233_11493316_11493416_11493555_11493703_11493830_11493948_11494930_11495123_11495959_11496247_11498058
ENSMUSG00000031503.14_14	chr8	+	4754	28	ISM	ENSMUSG00000031503.14	ENSMUST00000033899.14	6450	48	107777	3	15674	-3	3prime_fragment	FALSE	canonical	3	23	junction_2	5.76660838715525	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTATGTTTTCTGTCCCC	5965	False	NA	7	True	AATAAA	-17	NA	11470581	11499284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_11470670_11471167_11471323_11473551_11473625_11473716_11473824_11475338_11475541_11475928_11475989_11477006_11477064_11477552_11477661_11479306_11479529_11481239_11481402_11483653_11483825_11484627_11484772_11487586_11487710_11487923_11488106_11488353_11488418_11488554_11488630_11488946_11489055_11489305_11489414_11490378_11490451_11491221_11491348_11491879_11491997_11493070_11493233_11493316_11493416_11493555_11493703_11493830_11493948_11494930_11495123_11495959_11496247_11498058
ENSMUSG00000031503.14_19	chr8	+	3069	15	ISM	ENSMUSG00000031503.14	ENSMUST00000033899.14	6450	48	125129	6	-3175	-6	3prime_fragment	FALSE	canonical	3	23	junction_3	6.44323723934242	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGACTATGTTTTCTGTC	9996	False	NA	4	True	AATAAA	-14	NA	11487933	11499281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_11488106_11488353_11488418_11488554_11488630_11488946_11489055_11489305_11489414_11490378_11490451_11491221_11491348_11491879_11491997_11493070_11493233_11493316_11493416_11493555_11493703_11493830_11493948_11494930_11495123_11495959_11496247_11498058
ENSMUSG00000031503.14_21	chr8	+	2588	11	ISM	ENSMUSG00000031503.14	ENSMUST00000033899.14	6450	48	126567	2	-1737	-2	3prime_fragment	FALSE	canonical	3	24	junction_1	6.7297845433565	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTATGTTTTCTGTCCCCC	NA	False	NA	8	True	AATAAA	-18	NA	11489371	11499285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_11489414_11490378_11490451_11491221_11491348_11491879_11491997_11493070_11493233_11493316_11493416_11493555_11493703_11493830_11493948_11494930_11495123_11495959_11496247_11498058
ENSMUSG00000031503.14_25	chr8	+	534	1	ISM	ENSMUSG00000031503.14	ENSMUST00000033899.14	6450	48	135943	6	7639	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGACTATGTTTTCTGTC	1114	False	NA	4	True	AATAAA	-14	NA	11498747	11499281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_11498700_11499300
ENSMUSG00000031503.14_3	chr8	+	6393	48	FSM	ENSMUSG00000031503.14	ENSMUST00000033899.14	6450	48	55	2	55	-2	multi-exon	TRUE	canonical	3	15	junction_4	6.83737233737166	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTATGTTTTCTGTCCCCC	8535	False	NA	8	True	AATAAA	-18	NA	11362859	11499285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_11363115_11363418_11363508_11363629_11363685_11404276_11404358_11448661_11448797_11449703_11449749_11451147_11451265_11452162_11452235_11452983_11453020_11453341_11453405_11454963_11455000_11456812_11456855_11458051_11458145_11458881_11458918_11459421_11459473_11460054_11460100_11463978_11464033_11464741_11464809_11465363_11465475_11465925_11466076_11470576_11470670_11471167_11471323_11473551_11473625_11473716_11473824_11475338_11475541_11475928_11475989_11477006_11477064_11477552_11477661_11479306_11479529_11481239_11481402_11483653_11483825_11484627_11484772_11487586_11487710_11487923_11488106_11488353_11488418_11488554_11488630_11488946_11489055_11489305_11489414_11490378_11490451_11491221_11491348_11491879_11491997_11493070_11493233_11493316_11493416_11493555_11493703_11493830_11493948_11494930_11495123_11495959_11496247_11498058
ENSMUSG00000031503.14_33	chr8	+	4977	30	ISM	ENSMUSG00000031503.14	ENSMUST00000033899.14	6450	48	102595	10	10492	-10	3prime_fragment	FALSE	canonical	3	23	junction_4	5.69727807008292	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACTTGACTATGTTTTC	783	False	NA	0	True	AATAAA	-10	NA	11465399	11499277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_11465475_11465925_11466076_11470576_11470670_11471167_11471323_11473551_11473625_11473716_11473824_11475338_11475541_11475928_11475989_11477006_11477064_11477552_11477661_11479306_11479529_11481239_11481402_11483653_11483825_11484627_11484772_11487586_11487710_11487923_11488106_11488353_11488418_11488554_11488630_11488946_11489055_11489305_11489414_11490378_11490451_11491221_11491348_11491879_11491997_11493070_11493233_11493316_11493416_11493555_11493703_11493830_11493948_11494930_11495123_11495959_11496247_11498058
ENSMUSG00000031503.14_4	chr8	+	1554	16	ISM	ENSMUSG00000031503.14	ENSMUST00000033899.14	6450	48	41	38899	41	-10866	5prime_fragment	FALSE	canonical	3	15	junction_4	3.96092020733679	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGGTTCCTCCTCTATT	8521	False	NA	NA	False	ACTAAA	-17	NA	11362845	11460388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_11363115_11363418_11363508_11363629_11363685_11404276_11404358_11448661_11448797_11449703_11449749_11451147_11451265_11452162_11452235_11452983_11453020_11453341_11453405_11454963_11455000_11456812_11456855_11458051_11458145_11458881_11458918_11459421_11459473_11460054
ENSMUSG00000031504.7_0	chr8	-	1333	2	FSM	ENSMUSG00000031504.7	ENSMUST00000033900.7	1392	2	55	4	55	-4	multi-exon	FALSE	canonical	1	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCCTTGTTCTTGGGAA	NA	False	NA	NA	False	ATTAAA	-13	NA	11528655	11503521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_11504527_11528327
ENSMUSG00000031505.12_0	chr8	+	1228	10	FSM	ENSMUSG00000031505.12	ENSMUST00000177955.8	1307	10	73	6	-5	-6	multi-exon	FALSE	canonical	3	162	junction_1	41.4568048294447	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATTTGGAGTTTGTGG	NA	False	NA	27	True	AATAAA	-41	NA	11547578	11563281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
ENSMUSG00000031505.12_24	chr8	+	1182	9	ISM	ENSMUSG00000031505.12	ENSMUST00000033901.11	1359	10	5052	6	4987	-6	3prime_fragment	FALSE	canonical	3	211	junction_5	29.2016159655592	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATTTGGAGTTTGTGG	NA	False	NA	27	True	AATAAA	-41	NA	11552619	11563281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
ENSMUSG00000031505.12_5	chr8	+	1301	9	NIC	ENSMUSG00000031505.12	novel	1307	10	NA	NA	2	-3	intron_retention	FALSE	canonical	3	162	junction_1	41.5120464443756	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGGAGTTTGTGGTTG	NA	False	NA	30	True	AATAAA	-44	NA	11547588	11563284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559558_11560226_11560348_11561876_11561998_11562894
ENSMUSG00000031505.12_6	chr8	+	1313	10	FSM	ENSMUSG00000031505.12	ENSMUST00000033901.11	1359	10	38	8	13	-8	multi-exon	FALSE	canonical	3	77	junction_1	63.9388210675343	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGAAATTTGGAGTTTGT	NA	False	NA	25	True	AATAAA	-39	NA	11547605	11563279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_11547741_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
ENSMUSG00000031506.12_1	chr1	+	3323	10	FSM	ENSMUSG00000031506.12	ENSMUST00000049449.11	3261	10	-64	2	-39	-2	multi-exon	FALSE	canonical	0	0	junction_1	2.40370085030933	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCCACCCAATTCTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	135060398	135073053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_135060529_135061487_135061662_135062177_135062362_135062568_135062654_135063836_135063914_135065061_135065200_135065505_135065617_135066861_135067017_135069680_135069795_135070898
ENSMUSG00000031506.12_2	chr1	+	3326	10	FSM	ENSMUSG00000031506.12	ENSMUST00000187985.7	1990	10	-48	-1288	-48	5	multi-exon	FALSE	canonical	1	1	junction_1	2.23330569358242	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAATTCTTCTTTCCATC	NA	False	NA	NA	False	AATAAA	-26	NA	135060389	135073060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_135060516_135061487_135061662_135062177_135062362_135062568_135062654_135063836_135063914_135065061_135065200_135065505_135065617_135066861_135067017_135069680_135069795_135070898
ENSMUSG00000031506.12_5	chr1	+	2538	4	ISM	ENSMUSG00000031506.12	ENSMUST00000167080.3	2945	10	4457	-396	4457	-1	3prime_fragment	FALSE	canonical	1	2	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCCACCCAATTCTTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	135065503	135073054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_135065617_135066861_135067017_135069680_135069795_135070898
ENSMUSG00000031506.12_7	chr1	+	3381	10	FSM	ENSMUSG00000031506.12	ENSMUST00000167080.3	2945	10	-58	-378	-57	-19	multi-exon	FALSE	canonical	0	0	junction_1	2.40370085030933	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATAACCTCTTGGAT	NA	False	NA	NA	False	AATAAA	-2	NA	135060988	135073036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_135061194_135061487_135061662_135062177_135062362_135062568_135062654_135063836_135063914_135065061_135065200_135065505_135065617_135066861_135067017_135069680_135069795_135070898
ENSMUSG00000031508.15_0	chr8	-	3780	3	ISM	ENSMUSG00000031508.15	ENSMUST00000211690.2	2625	4	3246	-2	3246	0	3prime_fragment	FALSE	canonical	3	454	junction_1	47	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	7361	False	NA	-2	True	AATAAA	-15	NA	11671380	11661582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_11662948_11665814_11665911_11669061
ENSMUSG00000031508.15_13	chr8	-	5141	5	FSM	ENSMUSG00000031508.15	ENSMUST00000169782.3	5156	5	14	1	11	0	multi-exon	FALSE	canonical	3	209	junction_2	122.541829593001	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685743	11661583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
ENSMUSG00000031508.15_16	chr8	-	2426	7	FSM	ENSMUSG00000031508.15	ENSMUST00000211174.2	2447	7	22	-1	22	0	multi-exon	FALSE	canonical	3	27	junction_4	195.638626610959	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685732	11661582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11685410
ENSMUSG00000031508.15_17	chr8	-	7032	2	ISM	ENSMUSG00000031508.15	ENSMUST00000169782.3	5156	5	13986	6	2855	-4	3prime_fragment	FALSE	canonical	3	548	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCTGATCTGTCTCTGAA	6970	False	NA	-8	True	AATAAA	-9	NA	11671771	11661588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_11665911_11669061
ENSMUSG00000031508.15_18	chr8	-	7010	6	NIC	ENSMUSG00000031508.15	novel	2447	7	NA	NA	17	0	intron_retention	FALSE	canonical	3	89	junction_3	156.362399572276	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685737	11661583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11678531_11682865_11683019_11685410
ENSMUSG00000031508.15_2	chr8	-	1644	1	NIC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	11400	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11663226	11661582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_11661600_11663200
ENSMUSG00000031508.15_3	chr8	-	2381	7	FSM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	17	0	17	0	multi-exon	FALSE	canonical	3	111	junction_4	160.305350988529	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685737	11661582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
ENSMUSG00000031508.15_5	chr8	-	4159	4	ISM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	13031	0	1903	0	3prime_fragment	FALSE	canonical	3	159	junction_3	165.724671267336	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	6018	False	NA	-2	True	AATAAA	-15	NA	11672723	11661582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261
ENSMUSG00000031508.15_8	chr8	-	2270	6	FSM	ENSMUSG00000031508.15	ENSMUST00000033905.13	2285	6	16	-1	16	0	multi-exon	FALSE	canonical	3	209	junction_3	111.790876193006	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685738	11661582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
ENSMUSG00000031508.15_9	chr8	-	4388	4	FSM	ENSMUSG00000031508.15	ENSMUST00000211690.2	2625	4	-1761	-2	-1761	0	multi-exon	FALSE	canonical	3	89	junction_3	197.973623383408	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	2354	False	NA	-2	True	AATAAA	-15	NA	11676387	11661582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696
ENSMUSG00000031509.11_0	chr8	-	755	6	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3525	-7	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_3	15.5897402159241	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTAAGTTATCTGATA	NA	False	NA	-17	True	AATAAA	-13	NA	11716129	11705486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712692_11715035_11715099_11715899
ENSMUSG00000031509.11_4	chr8	-	173	1	Genic_Genomic	ENSMUSG00000031509.11	novel	NA	NA	NA	NA	5640	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATCT	NA	False	NA	NA	False	NA	NA	NA	11705095	11704922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_11704900_11705100
ENSMUSG00000031511.17_0	chr8	+	4799	21	NIC	ENSMUSG00000031511.17	novel	4628	21	NA	NA	-121	-8	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	19.8655480669424	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAAAACGTGTTGCTTCA	NA	False	NA	9	True	ATTAAA	-19	NA	11777983	11885211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_11778417_11808430_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11867659_11867885_11869637_11869732_11871959_11872050_11881492_11881593_11881894_11881950_11882969
ENSMUSG00000031511.17_32	chr8	+	2058	1	ISM	ENSMUSG00000031511.17	ENSMUST00000074856.13	4451	20	74802	6	2918	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAACGTGTTGCTTCATC	NA	False	NA	11	True	ATTAAA	-21	NA	11883155	11885213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_11883200_11885200
ENSMUSG00000031511.17_8	chr8	+	4205	19	NIC	ENSMUSG00000031511.17	novel	4451	20	NA	NA	15	-6	combination_of_known_junctions	FALSE	canonical	1	2	junction_14	24.1689654079129	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAACGTGTTGCTTCATC	9643	False	NA	11	True	ATTAAA	-21	NA	11808368	11885213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11869637_11869732_11871959_11872050_11881492_11881593_11881894_11881950_11882969
ENSMUSG00000031511.17_9	chr8	+	4432	20	FSM	ENSMUSG00000031511.17	ENSMUST00000074856.13	4451	20	13	6	13	-6	multi-exon	FALSE	canonical	3	61	junction_7	14.3717944757881	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAACGTGTTGCTTCATC	9641	False	NA	11	True	ATTAAA	-21	NA	11808366	11885213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11867659_11867885_11869637_11869732_11871959_11872050_11881492_11881593_11881894_11881950_11882969
ENSMUSG00000031513.9_0	chr8	-	2611	4	FSM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	245	23	245	-23	multi-exon	FALSE	canonical	3	354	junction_3	12.9614813968157	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAATAAAGATTTTAAATAT	9031	False	NA	-27	True	NA	NA	NA	34613942	34602748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_34604993_34606007_34606195_34607914_34607991_34613838
ENSMUSG00000031513.9_1	chr8	-	1781	1	ISM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	9679	2	9679	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTAGCTTGTGGGTGTT	NA	False	NA	-6	True	AATAAA	-14	NA	34604508	34602727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_34602700_34604500
ENSMUSG00000031516.12_0	chr8	-	902	7	FSM	ENSMUSG00000031516.12	ENSMUST00000033913.11	1249	7	345	2	12	-2	multi-exon	FALSE	canonical	3	293	junction_6	39.9485780584101	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATAGCTGCCTCAATTT	NA	False	NA	-5	True	AATAAA	-26	NA	34575605	34557578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573561_34575572
ENSMUSG00000031516.12_2	chr8	-	3083	5	NIC	ENSMUSG00000031516.12	novel	1249	7	NA	NA	13	-2	intron_retention	FALSE	canonical	3	293	junction_4	41.5774878991023	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATAGCTGCCTCAATTT	NA	False	NA	-5	True	AATAAA	-26	NA	34575604	34557578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_34557997_34559664_34562127_34564342_34564449_34573495_34573561_34575572
ENSMUSG00000031516.12_6	chr8	-	870	6	ISM	ENSMUSG00000031516.12	ENSMUST00000118811.8	934	7	1447	-215	-31	0	3prime_fragment	FALSE	canonical	3	383	junction_2	14.4277510374971	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGCTGCCTCAATTTCC	NA	False	NA	-3	True	AATAAA	-28	NA	34573559	34557576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495
ENSMUSG00000031520.7_0	chr8	+	1970	7	NIC	ENSMUSG00000031520.7	novel	2449	7	NA	NA	-291	-649	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	19.6044212700435	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGCTATGAAGTTCAGTC	730	False	NA	NA	False	AATAAA	-15	NA	54530349	54639482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_54530961_54609992_54610195_54612448_54612519_54622059_54622212_54633736_54633844_54634121_54634456_54638988
ENSMUSG00000031520.7_1	chr8	+	2172	7	FSM	ENSMUSG00000031520.7	ENSMUST00000033919.6	2449	7	-375	652	-375	-652	multi-exon	FALSE	canonical	3	36	junction_4	8.69386757049665	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATAAGCTATGAAGTTCA	646	False	NA	NA	False	AATAAA	-12	NA	54530265	54639479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_54530961_54609992_54610195_54612327_54612519_54622059_54622212_54633736_54633844_54634121_54634456_54638988
ENSMUSG00000031520.7_2	chr8	+	2109	8	NNC	ENSMUSG00000031520.7	novel	2449	7	NA	NA	-384	-647	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	18.4678429842198	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTATGAAGTTCAGTCTT	637	False	NA	NA	False	AATAAA	-17	NA	54530256	54639484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_54530961_54609992_54610195_54612327_54612372_54612448_54612519_54622059_54622212_54633736_54633844_54634121_54634456_54638988
ENSMUSG00000031521.6_0	chr8	+	1208	9	FSM	ENSMUSG00000031521.6	ENSMUST00000033920.6	1181	9	56	-83	-15	0	multi-exon	FALSE	canonical	3	314	junction_3	34.8440723079264	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTTGTCTACTTCCTT	NA	False	NA	22	True	AATAAA	-16	NA	53964817	53976456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973271_53973380_53974084_53974219_53976210
ENSMUSG00000031521.6_2	chr8	+	1186	9	NIC	ENSMUSG00000031521.6	novel	2250	10	NA	NA	-15	0	combination_of_known_splicesites	TRUE	canonical	3	23	junction_6	114.178314490975	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTTGTCTACTTCCTT	NA	False	NA	22	True	AATAAA	-16	NA	53964817	53976456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972005_53973271_53973380_53974084_53974219_53976210
ENSMUSG00000031523.17_0	chr8	-	180	1	ISM	ENSMUSG00000031523.17	ENSMUST00000033923.14	6159	14	46013	0	9339	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACACTGATTGAATTT	NA	False	NA	-13	True	NA	NA	NA	37035084	37034904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_37034900_37035100
ENSMUSG00000031523.17_1	chr8	-	6126	14	FSM	ENSMUSG00000031523.17	ENSMUST00000033923.14	6159	14	33	0	33	0	multi-exon	TRUE	canonical	3	9	junction_4	11.0077971289962	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACACTGATTGAATTT	NA	False	NA	-13	True	NA	NA	NA	37081064	37034904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_37037558_37038418_37038593_37039821_37040040_37041108_37041328_37041960_37042076_37044188_37044403_37046377_37046577_37046700_37046861_37049854_37050032_37050694_37052122_37053829_37053894_37060530_37060613_37066522_37066595_37080712
ENSMUSG00000031523.17_10	chr8	-	4856	6	ISM	ENSMUSG00000031523.17	ENSMUST00000033923.14	6159	14	46	12255	-23	-7861	5prime_fragment	FALSE	canonical	3	26	junction_4	7.49933330370107	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37081051	37047159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_37050032_37050694_37052122_37053829_37053894_37060530_37060613_37066522_37066595_37080712
ENSMUSG00000031523.17_11	chr8	-	3416	2	ISM	ENSMUSG00000031523.17	ENSMUST00000033923.14	6159	14	29862	12252	-6812	-7858	internal_fragment	FALSE	canonical	3	34	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37051235	37047156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_37050032_37050694
ENSMUSG00000031523.17_12	chr8	-	5506	5	NIC	ENSMUSG00000031523.17	novel	6159	14	NA	NA	-10	-7861	intron_retention	FALSE	canonical	3	26	junction_3	8.33666600026653	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37081038	37047159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_37052122_37053829_37053894_37060530_37060613_37066522_37066595_37080712
ENSMUSG00000031523.17_3	chr8	-	5496	10	ISM	ENSMUSG00000031523.17	ENSMUST00000033923.14	6159	14	29035	1	-7639	-1	3prime_fragment	FALSE	canonical	3	9	junction_4	6.66666666666667	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGAACACTGATTGAATT	NA	False	NA	-14	True	NA	NA	NA	37052062	37034905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_37037558_37038418_37038593_37039821_37040040_37041108_37041328_37041960_37042076_37044188_37044403_37046377_37046577_37046700_37046861_37049854_37050032_37050694
ENSMUSG00000031523.17_4	chr8	-	3704	7	ISM	ENSMUSG00000031523.17	ENSMUST00000033923.14	6159	14	34609	0	-2065	0	3prime_fragment	TRUE	canonical	3	9	junction_4	3.09569593683445	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACACTGATTGAATTT	NA	False	NA	-13	True	NA	NA	NA	37046488	37034904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_37037558_37038418_37038593_37039821_37040040_37041108_37041328_37041960_37042076_37044188_37044403_37046377
ENSMUSG00000031527.8_1	chr8	-	3073	7	FSM	ENSMUSG00000031527.8	ENSMUST00000033927.8	5079	7	21	1985	21	-1985	multi-exon	FALSE	canonical	3	346	junction_2	28.274939827031	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATCTCATTGGCATTGC	NA	False	NA	-10	True	ATTAAA	-21	NA	35962666	35934391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_35936525_35941550_35941666_35943612_35943723_35945713_35945798_35949669_35949881_35958354_35958534_35962425
ENSMUSG00000031527.8_4	chr8	-	2504	1	ISM	ENSMUSG00000031527.8	ENSMUST00000033927.8	5079	7	26681	1096	12556	-1096	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTGACATTGACTCTG	NA	False	NA	-22	True	NA	NA	NA	35936006	35933502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_35933500_35936000
ENSMUSG00000031529.6_0	chr8	-	3515	1	ISM	ENSMUSG00000031529.6	ENSMUST00000033929.6	9163	27	135710	6	8541	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTACACTGTGTGTAGCA	NA	False	NA	-23	True	AATAAA	-9	NA	35297134	35293619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_35293600_35297100
ENSMUSG00000031529.6_38	chr8	-	2675	13	ISM	ENSMUSG00000031529.6	ENSMUST00000033929.6	9163	27	-1	30325	-1	-19030	5prime_fragment	FALSE	canonical	3	108	junction_5	17.2841851284796	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTCCCCTTCCTCTCTG	NA	False	NA	0	True	NA	NA	NA	35432845	35323938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_35324688_35328668_35328841_35334434_35334514_35334847_35334940_35336625_35336748_35340181_35340369_35340756_35340824_35342367_35342463_35356829_35356906_35357657_35357695_35385532_35385629_35407849_35408075_35432167
ENSMUSG00000031529.6_4	chr8	-	9155	27	FSM	ENSMUSG00000031529.6	ENSMUST00000033929.6	9163	27	2	6	2	-6	multi-exon	FALSE	canonical	3	108	junction_19	17.0294297993192	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTACACTGTGTGTAGCA	NA	False	NA	-23	True	AATAAA	-9	NA	35432842	35293619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_35298876_35301591_35301749_35305537_35305725_35306041_35306148_35307121_35307197_35308906_35309005_35310068_35310190_35314434_35314518_35315735_35315974_35316306_35316496_35318251_35318362_35318767_35318988_35320377_35320544_35323081_35323228_35324607_35324688_35328668_35328841_35334434_35334514_35334847_35334940_35336625_35336748_35340181_35340369_35340756_35340824_35342367_35342463_35356829_35356906_35357657_35357695_35385532_35385629_35407849_35408075_35432167
ENSMUSG00000031530.7_0	chr8	+	2700	4	FSM	ENSMUSG00000031530.7	ENSMUST00000033930.5	2740	4	38	2	38	-2	multi-exon	FALSE	canonical	3	23	junction_3	1.63299316185545	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTGGGCCTCCTAAAAG	NA	False	NA	NA	False	AATAAA	-17	NA	35274488	35287046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_35275328_35283600_35283747_35284277_35284498_35285551
ENSMUSG00000031532.8_0	chr8	+	1823	6	FSM	ENSMUSG00000031532.8	ENSMUST00000033933.8	1860	6	34	3	34	0	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTATTCTTGTTCTTTGT	NA	False	NA	6	True	AATAAA	-13	NA	34621763	34637972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
ENSMUSG00000031533.5_0	chr8	+	1258	7	FSM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	65	192	28	-192	multi-exon	FALSE	canonical	3	683	junction_2	48.7100263463968	436	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAAATTCTCCTGTGTTG	NA	False	NA	8	True	ATTAAA	-17	NA	22901441	22919489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
ENSMUSG00000031534.16_0	chr8	-	956	4	FSM	ENSMUSG00000031534.16	ENSMUST00000033935.16	1402	4	59	387	32	-387	multi-exon	FALSE	canonical	3	179	junction_1	20.3960780543711	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGGGGTAGTTTGCTC	NA	False	NA	0	True	ATTAAA	-14	NA	22966839	22953017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_22953392_22961464_22961590_22963457_22963597_22966521
ENSMUSG00000031534.16_3	chr8	-	1210	3	NIC	ENSMUSG00000031534.16	novel	1402	4	NA	NA	33	-7	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	106.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCCAGCTGCCTTGCAT	NA	False	NA	-8	True	NA	NA	NA	22966838	22952637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_22953392_22963457_22963597_22966521
ENSMUSG00000031534.16_6	chr8	-	3879	3	ISM	ENSMUSG00000031534.16	ENSMUST00000163774.3	1435	5	32	390	32	-389	intron_retention	FALSE	canonical	3	179	junction_1	6	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGTTGGGGTAGTTTGC	NA	False	NA	-2	True	ATTAAA	-12	NA	22966839	22953019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_22953392_22961464_22961590_22963457
ENSMUSG00000031536.7_1	chr8	-	1200	14	FSM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	-5	6	-5	-6	multi-exon	FALSE	canonical	3	173	junction_8	16.1157058899497	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATATTGTCTTAACAAAT	NA	False	NA	NA	False	AATAAA	-14	NA	23143439	23118147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
ENSMUSG00000031536.7_4	chr8	-	2551	3	ISM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	19793	4	19793	-4	3prime_fragment	FALSE	canonical	3	196	junction_1	13.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTGTCTTAACAAATGT	NA	False	NA	NA	False	AATAAA	-16	NA	23123641	23118145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_23118386_23120358_23120499_23121470
ENSMUSG00000031537.16_1	chr8	-	4493	21	FSM	ENSMUSG00000031537.16	ENSMUST00000063401.10	3977	21	33	-549	3	-6	multi-exon	FALSE	canonical	3	51	junction_9	16.2802794816305	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCACCCATGAGTCATG	NA	False	NA	-7	True	NA	NA	NA	23196572	23149234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159747_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ENSMUSG00000031537.16_13	chr8	-	4371	20	NIC	ENSMUSG00000031537.16	novel	3977	21	NA	NA	1	-6	intron_retention	FALSE	canonical	3	4	junction_8	23.848668784024	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCACCCATGAGTCATG	NA	False	NA	-7	True	NA	NA	NA	23196574	23149234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ENSMUSG00000031537.16_17	chr8	-	1708	1	NIC	ENSMUSG00000031537.16	novel	3580	22	NA	NA	556	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCACCCATGAGTCATG	NA	False	NA	-7	True	NA	NA	NA	23150942	23149234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_23149200_23150900
ENSMUSG00000031537.16_3	chr8	-	3545	22	FSM	ENSMUSG00000031537.16	ENSMUST00000033939.13	3580	22	28	7	9	-6	multi-exon	FALSE	canonical	3	43	junction_1	18.670796433355	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCACCCATGAGTCATG	NA	False	NA	-7	True	NA	NA	NA	23196566	23149234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159747_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ENSMUSG00000031537.16_6	chr8	-	3463	21	NIC	ENSMUSG00000031537.16	novel	3580	22	NA	NA	0	-6	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	24.678482530334	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCACCCATGAGTCATG	NA	False	NA	-7	True	NA	NA	NA	23196575	23149234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_23150476_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159747_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
ENSMUSG00000031538.7_0	chr8	+	2545	14	FSM	ENSMUSG00000031538.7	ENSMUST00000033941.7	2525	14	-20	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.12619614785927	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACTGGTGCATATCCATG	NA	False	NA	NA	False	AATAAA	-24	NA	23247742	23272860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_23247845_23257095_23257184_23258461_23258505_23261709_23261848_23262221_23262333_23262651_23262827_23263632_23263725_23265580_23265756_23266806_23266893_23268118_23268315_23268428_23268566_23268670_23268812_23270441_23270606_23271963
ENSMUSG00000031539.7_0	chr8	-	3361	9	FSM	ENSMUSG00000031539.7	ENSMUST00000210656.2	3373	9	12	0	-6	0	multi-exon	FALSE	canonical	3	19	junction_1	1.96452920568771	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATGTCTGGTTACTGAG	NA	False	NA	-1	True	AATAAA	-18	NA	23295626	23277369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295591
ENSMUSG00000031539.7_2	chr8	-	3409	9	FSM	ENSMUSG00000031539.7	ENSMUST00000163739.3	3417	9	8	0	6	0	multi-exon	FALSE	canonical	0	0	junction_8	7.29618907375624	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATGTCTGGTTACTGAG	NA	False	NA	-1	True	AATAAA	-18	NA	23295612	23277369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295529
ENSMUSG00000031539.7_3	chr8	-	1506	1	ISM	ENSMUSG00000031539.7	ENSMUST00000163739.3	3417	9	16745	0	16743	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATGTCTGGTTACTGAG	NA	False	NA	-1	True	AATAAA	-18	NA	23278875	23277369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_23277400_23278900
ENSMUSG00000031540.15_0	chr8	+	6622	18	FSM	ENSMUSG00000031540.15	ENSMUST00000044331.7	9113	18	-15	2506	-1	-2506	multi-exon	FALSE	canonical	2	9	junction_7	4.68894009020697	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTAGAGGAGTTTTTCTTT	NA	False	NA	52	True	ATTAAA	-13	NA	23349549	23430769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_23349649_23351532_23351619_23351903_23352818_23393123_23393233_23397661_23397778_23398258_23398341_23400147_23400284_23401675_23401993_23404284_23404404_23409340_23409457_23413530_23413673_23415296_23415459_23416392_23416487_23419231_23419464_23420180_23420395_23422130_23422731_23425495_23425815_23428004
ENSMUSG00000031540.15_4	chr8	+	6180	3	ISM	ENSMUSG00000031540.15	ENSMUST00000044331.7	9113	18	72564	12	18327	-12	3prime_fragment	FALSE	canonical	3	21	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATTTTGGATGTCTGTC	NA	False	NA	-3	True	AATAAA	-9	NA	23422128	23433263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_23422731_23425495_23425815_23428004
ENSMUSG00000031540.15_5	chr8	+	5417	2	ISM	ENSMUSG00000031540.15	ENSMUST00000044331.7	9113	18	76102	2	21865	-2	3prime_fragment	FALSE	canonical	3	21	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTCTGTCTTGCCTGTGG	NA	False	NA	7	True	AATAAA	-19	NA	23425666	23433273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_23425815_23428004
ENSMUSG00000031540.15_6	chr8	+	2619	1	ISM	ENSMUSG00000031540.15	ENSMUST00000238975.2	9191	18	81101	5	26850	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGATGTCTGTCTTGCCTG	NA	False	NA	4	True	AATAAA	-16	NA	23430651	23433270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_23430700_23433300
ENSMUSG00000031545.7_0	chr8	-	3057	13	FSM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	-14	2475	-14	-2475	multi-exon	FALSE	canonical	3	189	junction_11	21.3085793884894	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAATTTAGGGACTTTG	NA	False	NA	-25	True	AATAAA	-11	NA	23698376	23663755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_23664677_23665355_23665436_23665523_23665653_23669430_23669517_23669784_23669841_23670116_23670233_23670648_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
ENSMUSG00000031545.7_2	chr8	-	2825	12	ISM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	16824	2475	-584	-2475	3prime_fragment	FALSE	canonical	3	189	junction_11	21.3150317502085	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAATTTAGGGACTTTG	NA	False	NA	-25	True	AATAAA	-11	NA	23681538	23663755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_23664677_23665355_23665436_23665523_23665653_23669430_23669517_23669784_23669841_23670116_23670233_23670648_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731
ENSMUSG00000031546.7_0	chr8	-	1132	8	FSM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	6	211	6	-211	multi-exon	FALSE	canonical	3	605	junction_1	23.2914103462707	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTCTACTACTTACTGA	NA	False	NA	-2	True	AATAAA	-25	NA	23727669	23716842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
ENSMUSG00000031548.8_1	chr8	+	2706	3	FSM	ENSMUSG00000031548.8	ENSMUST00000033952.8	4372	3	-1	1667	-1	-1667	multi-exon	FALSE	canonical	3	1172	junction_2	95.5	2303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGTTAATT	NA	False	NA	NA	False	NA	NA	NA	23901516	23937981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_23902345_23907345_23907424_23936181
ENSMUSG00000031548.8_17	chr8	+	2415	1	ISM	ENSMUSG00000031548.8	ENSMUST00000033952.8	4372	3	35711	5	35711	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACAGCGTGAGTTGTGA	NA	False	NA	19	True	ACTAAA	-12	NA	23937228	23939643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_23937200_23939600
ENSMUSG00000031549.17_2	chr8	-	2816	9	NNC	ENSMUSG00000031549.17	novel	2452	10	NA	NA	-20	-1	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_8	1.69096865730859	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTCTAGCTCAAAGTCT	8212	False	NA	NA	False	AATAAA	-18	NA	25044633	25021908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_25023969_25025157_25025307_25030609_25030662_25036522_25036641_25037155_25037256_25038835_25038851_25040784_25040904_25043736_25043857_25044550
ENSMUSG00000031555.16_0	chr8	-	3912	22	FSM	ENSMUSG00000031555.16	ENSMUST00000084035.12	3985	22	60	13	-43	-13	multi-exon	TRUE	non_canonical	0	0	junction_2	31.0462313449736	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAAATTCTTGTTTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	25506878	25439639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_25441027_25445947_25446016_25452929_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
ENSMUSG00000031555.16_1	chr8	-	3934	22	NNC	ENSMUSG00000031555.16	novel	4044	22	NA	NA	-43	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	31.0462313449736	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACTTGAAATTCTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	25506878	25439644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_25441027_25445947_25446016_25452902_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
ENSMUSG00000031555.16_9	chr8	-	693	1	ISM	ENSMUSG00000031555.16	ENSMUST00000084035.12	3985	22	66611	8	47479	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTCTTGTTTTGTCGTCC	NA	False	NA	NA	False	AATAAA	-27	NA	25440327	25439634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_25439600_25440300
ENSMUSG00000031556.7_0	chr8	+	1209	4	FSM	ENSMUSG00000031556.7	ENSMUST00000033961.7	1281	4	64	8	16	-6	multi-exon	FALSE	canonical	3	225	junction_1	26.3185612575358	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTAGCCTGCTGTGTG	NA	False	NA	6	True	AATAAA	-6	NA	25507290	25513268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_25507609_25508081_25508170_25510454_25510571_25512581
ENSMUSG00000031557.17_0	chr8	-	1037	1	ISM	ENSMUSG00000031557.17	ENSMUST00000064883.14	5176	12	60501	1695	49471	1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAACTTTTGTGTGTTTT	NA	False	NA	21	True	NA	NA	NA	25531891	25530854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_25530900_25531900
ENSMUSG00000031557.17_2	chr8	-	3256	12	FSM	ENSMUSG00000031557.17	ENSMUST00000064883.14	5176	12	209	1711	-13	-15	multi-exon	FALSE	canonical	3	27	junction_11	35.6008635794598	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9897	False	NA	5	True	NA	NA	NA	25592183	25530870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25592049
ENSMUSG00000031557.17_3	chr8	-	3232	12	FSM	ENSMUSG00000031557.17	ENSMUST00000128715.8	3463	12	216	15	2	-15	multi-exon	FALSE	canonical	0	0	junction_11	42.7701912106826	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5827	False	NA	5	True	NA	NA	NA	25591785	25530870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25591675
ENSMUSG00000031557.17_4	chr8	-	3193	12	NIC	ENSMUSG00000031557.17	novel	5176	12	NA	NA	-7	-15	combination_of_known_junctions	FALSE	canonical	2	6	junction_11	41.1584320513503	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8168	False	NA	5	True	NA	NA	NA	25581369	25530870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25581298
ENSMUSG00000031558.16_0	chr5	+	7717	36	FSM	ENSMUSG00000031558.16	ENSMUST00000173107.8	9960	36	18	2225	2	-3	multi-exon	TRUE	canonical	3	71	junction_14	20.9676913758442	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGCTCCCACGTTAACC	NA	False	NA	13	True	AATAAA	-15	NA	48140497	48462850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650_48157723_48327496_48327569_48339587_48339660_48343837_48343910_48346770_48346935_48349534_48349674_48368097_48368170_48368624_48368697_48374793_48374866_48377003_48377148_48377258_48377423_48381994_48382146_48387601_48387677_48389253_48389398_48392679_48392824_48394597_48394765_48395717_48395851_48399890_48399960_48401969_48402042_48402918_48402991_48404491_48404564_48407119_48407284_48414098_48414224_48414347_48414446_48416885_48417026_48432923_48433018_48439058_48439197_48439286_48439528_48440729_48440861_48453750_48453906_48459607_48459897_48460094_48460307_48461341
ENSMUSG00000031558.16_2	chr5	+	7742	37	NIC	ENSMUSG00000031558.16	novel	7758	38	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	92	junction_15	20.6287548022501	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGCTCCCACGTTAACCT	NA	False	NA	14	True	AATAAA	-16	NA	48140497	48462851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650_48157723_48327496_48327569_48339587_48339660_48343837_48343910_48346770_48346935_48349534_48349674_48368097_48368170_48368624_48368697_48374793_48374866_48377003_48377148_48377258_48377423_48378308_48378333_48381994_48382146_48387601_48387677_48389253_48389398_48392679_48392824_48394597_48394765_48395717_48395851_48399890_48399960_48401969_48402042_48402918_48402991_48404491_48404564_48407119_48407284_48414098_48414224_48414347_48414446_48416885_48417026_48432923_48433018_48439058_48439197_48439286_48439528_48440729_48440861_48453750_48453906_48459607_48459897_48460094_48460307_48461341
ENSMUSG00000031561.17_1	chr8	-	4381	7	ISM	ENSMUSG00000031561.17	ENSMUST00000033965.14	8961	29	398229	23	23638	-23	3prime_fragment	FALSE	canonical	3	50	junction_6	11.2607972877392	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAATGATAAAAAC	NA	False	NA	NA	False	AAAAAG	-10	NA	48729496	48680739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_48682237_48685042_48685174_48688324_48689937_48693279_48693577_48707444_48707681_48709866_48710043_48729064
ENSMUSG00000031561.17_14	chr8	-	8388	26	NIC	ENSMUSG00000031561.17	novel	8663	27	NA	NA	103	-23	combination_of_known_junctions	FALSE	canonical	2	15	junction_25	16.204986886758	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAATGATAAAAAC	NA	False	NA	NA	False	AAAAAG	-10	NA	49008245	48680739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_48682237_48685042_48685174_48688324_48689937_48693279_48693577_48707444_48707681_48709866_48710043_48729064_48729940_48730701_48730857_48731992_48732226_48740825_48741076_48745153_48745298_48746541_48746810_48751820_48752083_48752628_48752749_48753789_48754007_48763657_48763805_48788623_48788810_48793988_48794190_48795291_48795487_48795649_48795752_48796266_48796478_48802233_48802449_48820345_48820469_48848470_48848710_48870042_48870281_49008187
ENSMUSG00000031561.17_28	chr8	-	4624	20	NIC	ENSMUSG00000031561.17	novel	8663	27	NA	NA	3	-31	combination_of_known_junctions	FALSE	canonical	3	47	junction_19	13.0230990180234	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGTCTGTAATTTTTAG	NA	False	NA	NA	False	AATAGA	-32	NA	49009071	48728980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_48729940_48730701_48730857_48731992_48732226_48740825_48741076_48745153_48745298_48746541_48746810_48751820_48752083_48752628_48752749_48753789_48754007_48763657_48763805_48788623_48788810_48793988_48794190_48795291_48795487_48795649_48795752_48796266_48796478_48802233_48802449_48820345_48820469_48848470_48848710_48870042_48870281_49008912
ENSMUSG00000031561.17_3	chr8	-	2550	3	ISM	ENSMUSG00000031561.17	ENSMUST00000033965.14	8961	29	438491	11	63900	-11	3prime_fragment	FALSE	canonical	3	69	junction_2	1.5	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTGAACTGTG	NA	False	NA	NA	False	AATAAA	-4	NA	48689234	48680727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_48682237_48685042_48685174_48688324
ENSMUSG00000031561.17_38	chr8	-	2582	10	NIC	ENSMUSG00000031561.17	novel	2267	10	NA	NA	3	317	combination_of_known_junctions	FALSE	canonical	3	47	junction_9	13.5355042958587	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTAGCTGGTTTTTTTT	NA	False	NA	NA	False	AGTAAA	-14	NA	49009071	48787910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_48788810_48793988_48794190_48795291_48795487_48795649_48795752_48796266_48796478_48802233_48802449_48820345_48820469_48848470_48848710_48870042_48870281_49008912
ENSMUSG00000031561.17_4	chr8	-	8474	26	NIC	ENSMUSG00000031561.17	novel	8663	27	NA	NA	24	-17	combination_of_known_junctions	FALSE	canonical	3	47	junction_25	12.7658293894286	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGATAAAAACATGTGA	NA	False	NA	NA	False	AAAAAG	-16	NA	49009050	48680733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_48682237_48685042_48685174_48688324_48689937_48693279_48693577_48707444_48707681_48709866_48710043_48729064_48729940_48730701_48730857_48731992_48732226_48740825_48741076_48745153_48745298_48746541_48746810_48751820_48752083_48752628_48752749_48753789_48754007_48763657_48763805_48788623_48788810_48793988_48794190_48795291_48795487_48795649_48795752_48796266_48796478_48802233_48802449_48820345_48820469_48848470_48848710_48870042_48870281_49008912
ENSMUSG00000031562.16_0	chr8	+	1886	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	205	5	1	-3	multi-exon	TRUE	canonical	3	319	junction_1	42.4480859403578	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAGACGTGTTTGCTTTT	NA	False	NA	5	True	ATTAAA	-11	NA	48563197	48594695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ENSMUSG00000031562.16_1	chr8	+	1801	5	ISM	ENSMUSG00000031562.17	ENSMUST00000033966.14	2072	6	1645	3	1447	-3	3prime_fragment	FALSE	canonical	3	326	junction_4	40.4505871403618	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAGACGTGTTTGCTTTT	NA	False	NA	5	True	ATTAAA	-11	NA	48564692	48594695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ENSMUSG00000031562.16_2	chr8	+	1948	6	NIC	ENSMUSG00000031562.17	novel	1126	5	NA	NA	158	-3	combination_of_known_junctions	FALSE	canonical	3	56	junction_1	132.43775896624	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAGACGTGTTTGCTTTT	NA	False	NA	5	True	ATTAAA	-11	NA	48563403	48594695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ENSMUSG00000031562.16_32	chr8	+	2277	1	NIC	ENSMUSG00000031562.17	novel	2096	6	NA	NA	29175	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACGTGTTTGCTTTTAT	NA	False	NA	7	True	ATTAAA	-13	NA	48592420	48594697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_48592400_48594700
ENSMUSG00000031562.16_9	chr8	+	4747	4	FSM	ENSMUSG00000031562.17	ENSMUST00000173991.8	786	4	8	-3969	8	-3	multi-exon	FALSE	canonical	3	319	junction_1	45.0209827623619	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAGACGTGTTTGCTTTT	NA	False	NA	5	True	ATTAAA	-11	NA	48563207	48594695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292
ENSMUSG00000031563.9_0	chr8	-	4844	23	FSM	ENSMUSG00000031563.9	ENSMUST00000057561.9	8678	23	48	3786	48	-3786	multi-exon	FALSE	canonical	3	189	junction_17	22.8505746170765	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCAAAGGGTGTGGACT	NA	False	NA	NA	False	CATAAA	-15	NA	48443538	48280779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_48281820_48284646_48284775_48295899_48296143_48299181_48299275_48300428_48300594_48302340_48302525_48304939_48305062_48309218_48309384_48311764_48311958_48316887_48316975_48317086_48317168_48317539_48317670_48321206_48321827_48322813_48322904_48328263_48328507_48331862_48331937_48333135_48333283_48336528_48336659_48340106_48340187_48352470_48352548_48353687_48353892_48373623_48373734_48443100
ENSMUSG00000031563.9_1	chr8	-	1914	1	ISM	ENSMUSG00000031563.9	ENSMUST00000057561.9	8678	23	162144	2535	162144	-2535	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTTAAACTTAGAATTTA	NA	False	NA	-19	True	AATAAA	-22	NA	48281442	48279528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_48279500_48281400
ENSMUSG00000031563.9_12	chr8	-	5564	21	NIC	ENSMUSG00000031563.9	novel	8678	23	NA	NA	56	-2777	combination_of_known_splicesites	FALSE	canonical	2	6	junction_19	52.2994024822464	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGGGACTTCGGTTTTA	NA	False	NA	NA	False	AATAAA	-32	NA	48443530	48279770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_48281820_48284646_48284775_48295899_48296143_48299181_48299275_48300428_48300594_48302340_48302525_48304939_48305062_48309218_48309384_48311764_48311958_48316887_48316975_48317086_48317168_48317539_48317670_48321206_48321827_48322813_48322904_48328263_48328507_48331862_48331937_48333135_48333283_48336528_48336659_48340106_48340187_48373623_48373734_48443100
ENSMUSG00000031563.9_7	chr8	-	4203	13	ISM	ENSMUSG00000031563.9	ENSMUST00000057561.9	8678	23	122044	2550	122044	-2550	3prime_fragment	TRUE	canonical	3	199	junction_7	23.5022162075551	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTATTAAAAATATTTT	NA	False	NA	-34	True	AATAAA	-7	NA	48321542	48279543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_48281820_48284646_48284775_48295899_48296143_48299181_48299275_48300428_48300594_48302340_48302525_48304939_48305062_48309218_48309384_48311764_48311958_48316887_48316975_48317086_48317168_48317539_48317670_48321206
ENSMUSG00000031565.19_0	chr8	+	4051	18	NIC	ENSMUSG00000031565.19	novel	5025	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_9	52.4816659369305	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTATCCTGGGCGTGTG	NA	False	NA	14	True	AATAAA	-17	NA	26008808	26064800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047837_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056924_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
ENSMUSG00000031565.19_1	chr8	+	4051	18	FSM	ENSMUSG00000031565.19	ENSMUST00000117179.9	4046	18	-2	-3	-2	0	multi-exon	FALSE	non_canonical	0	0	junction_9	66.5202833494101	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTATCCTGGGCGTGTG	NA	False	NA	14	True	AATAAA	-17	NA	26008808	26064800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047831_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056930_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
ENSMUSG00000031565.19_2	chr8	+	4057	18	FSM	ENSMUSG00000031565.19	ENSMUST00000084027.13	5025	18	34	934	-2	0	multi-exon	FALSE	non_canonical	0	0	junction_9	63.8572694769507	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTATCCTGGGCGTGTG	NA	False	NA	14	True	AATAAA	-17	NA	26008808	26064800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047837_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056930_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
ENSMUSG00000031565.19_4	chr8	+	4044	18	NIC	ENSMUSG00000031565.19	novel	4046	18	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	61	junction_9	55.8011174250333	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTATCCTGGGCGTGT	NA	False	NA	13	True	AATAAA	-16	NA	26008808	26064799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047831_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056924_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
ENSMUSG00000031568.17_0	chr8	+	2911	7	NIC	ENSMUSG00000031568.17	novel	2921	8	NA	NA	2	-5	intron_retention	FALSE	canonical	0	0	junction_6	72.1795600491503	167	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATTTTTTTCTATATGT	NA	False	NA	2	True	AATAAA	-12	NA	47986700	48005855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_47986979_47990313_47990395_47995726_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48003729
ENSMUSG00000031568.17_1	chr8	+	2894	7	NIC	ENSMUSG00000031568.17	novel	1371	8	NA	NA	-9	-7	intron_retention	FALSE	canonical	0	0	junction_6	82.951793229562	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTGATTTTTTTCTATAT	NA	False	NA	0	True	AATAAA	-10	NA	47986711	48005853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_47986979_47990313_47990395_47995730_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48003729
ENSMUSG00000031568.17_3	chr8	+	2983	6	NIC	ENSMUSG00000031568.17	novel	2921	8	NA	NA	10	-5	intron_retention	FALSE	canonical	0	0	junction_5	75.3885933016395	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATTTTTTTCTATATGT	NA	False	NA	2	True	AATAAA	-12	NA	47986708	48005855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_47986979_47990313_47990395_47995726_47996065_47997145_47997264_48000823_48000874_48003729
ENSMUSG00000031570.18_0	chr8	+	1596	7	NIC	ENSMUSG00000031570.18	novel	1483	7	NA	NA	-10	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	26.0410999938345	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAACATACTGTGTGTGTG	NA	False	NA	12	True	AATAAA	-24	NA	26210053	26214909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_26210179_26210293_26210511_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ENSMUSG00000031570.18_1	chr8	+	2091	6	FSM	ENSMUSG00000031570.18	ENSMUST00000133117.8	2099	6	4	4	4	0	multi-exon	FALSE	canonical	3	39	junction_2	15.0545674132471	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACATACTGTGTGTGTGT	NA	False	NA	13	True	AATAAA	-25	NA	26210094	26214910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26212628_26214106
ENSMUSG00000031570.18_14	chr8	+	1444	6	ISM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	150	4	-25	0	3prime_fragment	FALSE	canonical	3	39	junction_1	17.1067238242745	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACATACTGTGTGTGTGT	NA	False	NA	13	True	AATAAA	-25	NA	26210213	26214910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ENSMUSG00000031570.18_17	chr8	+	502	1	ISM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	4335	14	1414	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCTTCCTATAACATACT	NA	False	NA	3	True	AATAAA	-15	NA	26214398	26214900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_26214400_26214900
ENSMUSG00000031570.18_19	chr8	+	2272	5	NIC	ENSMUSG00000031570.18	novel	2099	6	NA	NA	2	0	intron_retention	FALSE	canonical	3	58	junction_4	11.1214882097676	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACATACTGTGTGTGTGT	NA	False	NA	13	True	AATAAA	-25	NA	26210092	26214910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_26210179_26210293_26210673_26211200_26211265_26211688_26212628_26214106
ENSMUSG00000031570.18_2	chr8	+	2052	6	NIC	ENSMUSG00000031570.18	novel	1419	7	NA	NA	2	-1	intron_retention	FALSE	canonical	3	21	junction_2	21.0047613649858	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAACATACTGTGTGTGTG	NA	False	NA	12	True	AATAAA	-24	NA	26210092	26214909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688_26212628_26214106
ENSMUSG00000031570.18_3	chr8	+	1409	7	FSM	ENSMUSG00000031570.18	ENSMUST00000124764.8	1419	7	6	4	3	0	multi-exon	FALSE	canonical	3	21	junction_2	20.3141986469235	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACATACTGTGTGTGTGT	NA	False	NA	13	True	AATAAA	-25	NA	26210093	26214910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ENSMUSG00000031570.18_4	chr8	+	1448	7	FSM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	31	4	4	0	multi-exon	FALSE	canonical	3	39	junction_2	15.9269164205337	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACATACTGTGTGTGTGT	NA	False	NA	13	True	AATAAA	-25	NA	26210094	26214910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ENSMUSG00000031570.18_5	chr8	+	531	5	ISM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	12	3062	-12	39	5prime_fragment	FALSE	canonical	3	39	junction_2	16.7107749670684	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTCCGCTCTTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	26210075	26211852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688
ENSMUSG00000031570.18_7	chr8	+	1576	8	FSM	ENSMUSG00000031570.18	ENSMUST00000139836.8	1539	8	-41	4	-14	0	multi-exon	FALSE	canonical	1	3	junction_6	28.6997120087947	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACATACTGTGTGTGTGT	NA	False	NA	13	True	AATAAA	-25	NA	26210049	26214910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26213057_26213141_26214106
ENSMUSG00000031575.19_1	chr8	-	2300	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	29	8	29	2	multi-exon	TRUE	canonical	3	3119	junction_12	186.058007680998	3458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTATGGTACTTGGC	NA	False	NA	-20	True	AATAAA	-11	NA	26337693	26306911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
ENSMUSG00000031575.19_12	chr8	-	2402	16	FSM	ENSMUSG00000031575.19	ENSMUST00000068892.15	3307	16	17	888	0	2	multi-exon	FALSE	canonical	3	230	junction_15	813.355748325008	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTATGGTACTTGGC	NA	False	NA	-20	True	AATAAA	-11	NA	26330798	26306911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609
ENSMUSG00000031575.19_2	chr8	-	2301	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	27	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	874.359651402099	447	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTATGGTACTTGGC	NA	False	NA	-20	True	AATAAA	-11	NA	26337695	26306911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318887_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
ENSMUSG00000031577.11_0	chr8	+	2155	7	FSM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	10	968	-2	-968	multi-exon	FALSE	canonical	3	124	junction_5	19.2476549798208	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTATCTCTTCTATT	NA	False	NA	3	True	ATTAAA	-14	NA	31640352	31650114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909
ENSMUSG00000031577.11_1	chr8	+	2987	8	FSM	ENSMUSG00000031577.11	ENSMUST00000209986.2	3652	8	-12	677	1	-677	multi-exon	FALSE	canonical	2	10	junction_7	52.8432414152019	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGAGACTCAGCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	31640355	31652690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909_31650078_31651818
ENSMUSG00000031577.11_2	chr8	+	1887	5	ISM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	7	5036	-5	-5036	5prime_fragment	FALSE	canonical	3	141	junction_1	15.352117117844	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGAATCCGTTTCACTC	NA	False	NA	9	True	GATAAA	-21	NA	31640349	31646046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805
ENSMUSG00000031578.6_0	chr8	-	1869	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	26	7	25	-7	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	787	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAACTATGGTCTTGAG	NA	False	NA	-9	True	TATAAA	-13	NA	31658766	31649497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ENSMUSG00000031583.14_0	chr8	-	6351	34	FSM	ENSMUSG00000031583.14	ENSMUST00000033990.7	5019	34	-35	-1297	1	-1	multi-exon	FALSE	canonical	3	28	junction_14	7.07885533384216	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAGCCTCAGATATGA	NA	False	NA	NA	False	NA	NA	NA	33875535	33724412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_33726488_33730976_33731183_33738949_33739113_33741732_33741865_33745525_33745641_33746976_33747090_33747225_33747302_33756978_33757053_33757812_33757886_33758750_33758849_33758923_33759095_33770799_33770942_33774645_33774739_33775164_33775267_33778783_33778966_33782585_33782761_33784931_33785120_33795681_33795789_33800738_33800822_33806371_33806441_33807225_33807335_33807573_33807642_33809179_33809256_33810497_33810637_33812315_33812397_33814194_33814622_33819129_33819245_33824203_33824274_33826024_33826175_33833004_33833154_33833574_33833721_33842101_33842215_33843322_33843428_33875369
ENSMUSG00000031583.14_14	chr8	-	2704	19	ISM	ENSMUSG00000031583.14	ENSMUST00000033990.7	5019	34	-28	56701	8	31827	5prime_fragment	FALSE	canonical	3	28	junction_1	7.39035073258484	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAGCAAAGACTGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	33875528	33782410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_33782761_33784931_33785120_33795681_33795789_33800738_33800822_33806371_33806441_33807225_33807335_33807573_33807642_33809179_33809256_33810497_33810637_33812315_33812397_33814194_33814622_33819129_33819245_33824203_33824274_33826024_33826175_33833004_33833154_33833574_33833721_33842101_33842215_33843322_33843428_33875369
ENSMUSG00000031583.14_2	chr8	-	1512	1	Genic_Genomic	ENSMUSG00000031583.14	novel	NA	NA	NA	NA	94664	9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATATGATTATATATCT	5894	False	NA	NA	False	NA	NA	NA	33725914	33724402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_33724400_33725900
ENSMUSG00000031583.14_26	chr8	-	3469	24	ISM	ENSMUSG00000031583.14	ENSMUST00000211498.2	4856	28	10003	0	10003	0	3prime_fragment	FALSE	canonical	3	28	junction_14	7.20638238438284	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTGTTCTTGGTAAACT	NA	False	NA	NA	False	ATTAAA	-14	NA	33810575	33725711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_33726488_33730976_33731183_33738949_33739113_33741732_33741865_33745525_33745641_33746976_33747090_33747225_33747302_33756978_33757053_33757812_33757886_33758750_33758849_33758923_33759095_33770799_33770942_33774645_33774739_33775164_33775267_33778783_33778966_33782585_33782761_33784931_33785120_33795681_33795789_33800738_33800822_33806371_33806441_33807225_33807335_33807573_33807642_33809179_33809256_33810497
ENSMUSG00000031583.14_30	chr8	-	6506	35	NIC	ENSMUSG00000031583.14	novel	5019	34	NA	NA	-22	11	combination_of_known_junctions	FALSE	canonical	0	0	junction_33	11.4657606734167	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATATGATTATATATCTGT	NA	False	NA	NA	False	NA	NA	NA	33875577	33724400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_33726488_33730976_33731183_33738949_33739113_33741732_33741865_33745525_33745641_33746976_33747090_33747225_33747302_33756978_33757053_33757812_33757886_33758750_33758849_33758923_33759095_33770799_33770942_33774645_33774739_33775164_33775267_33778783_33778966_33782585_33782761_33784931_33785120_33795681_33795789_33800738_33800822_33806371_33806441_33807225_33807335_33807573_33807642_33809179_33809256_33810497_33810637_33812315_33812397_33814194_33814622_33819129_33819245_33824203_33824274_33826024_33826175_33833004_33833154_33833574_33833721_33842101_33842215_33843322_33843428_33851195_33851297_33875369
ENSMUSG00000031583.14_6	chr8	-	6237	34	FSM	ENSMUSG00000031583.14	ENSMUST00000033991.13	6262	34	21	4	2	-4	multi-exon	FALSE	canonical	3	10	junction_33	8.54201521159467	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGAAAAAAGCCTCAGATA	NA	False	NA	NA	False	NA	NA	NA	33875534	33724415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_33726488_33730976_33731183_33738949_33739113_33741732_33741865_33745525_33745641_33746976_33747090_33747225_33747302_33756978_33757053_33757812_33757886_33758750_33758849_33758923_33759095_33770799_33770942_33774645_33774739_33775164_33775267_33778783_33778966_33782585_33782761_33784931_33785120_33795681_33795789_33800738_33800822_33806371_33806441_33807225_33807335_33807573_33807642_33809179_33809256_33810497_33810637_33812315_33812397_33814194_33814622_33819129_33819245_33824203_33824274_33826024_33826175_33833004_33833154_33833574_33833721_33842101_33842215_33843322_33843428_33875479
ENSMUSG00000031584.17_2	chr8	+	2308	13	FSM	ENSMUSG00000031584.17	ENSMUST00000033992.9	2673	13	359	6	359	-6	multi-exon	FALSE	canonical	3	1474	junction_4	147.314360580811	2736	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTATGCTGCTGTCAGTGT	761	False	NA	8	True	TATAAA	-11	NA	34143624	34188185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_34143808_34159180_34159208_34159920_34160010_34161550_34161621_34164114_34164263_34170290_34170346_34171492_34171593_34172620_34172708_34175571_34175731_34179368_34179481_34183826_34183959_34185026_34185161_34187173
ENSMUSG00000031585.14_0	chr8	+	1357	8	FSM	ENSMUSG00000031585.14	ENSMUST00000170705.8	1634	8	93	184	93	-184	multi-exon	FALSE	canonical	3	438	junction_1	317.681974204855	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATTCAGTTTGTCTCT	5118	False	NA	33	True	AATAAA	-30	NA	34221953	34267008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_34222017_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUSG00000031585.14_21	chr8	+	1291	7	ISM	ENSMUSG00000031585.14	ENSMUST00000171010.8	1664	8	3393	198	2289	-189	3prime_fragment	FALSE	canonical	3	1161	junction_5	81.0440552347234	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAGGAAATTCAGTTTG	8924	False	NA	28	True	AATAAA	-25	NA	34225759	34267003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUSG00000031585.14_6	chr8	+	1343	8	FSM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	39	184	39	-184	multi-exon	FALSE	canonical	3	804	junction_1	195.585463338633	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATTCAGTTTGTCTCT	5273	False	NA	33	True	AATAAA	-30	NA	34222108	34267008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUSG00000031586.18_0	chr8	-	2430	8	FSM	ENSMUSG00000031586.18	ENSMUST00000053251.12	2466	8	28	8	6	-4	multi-exon	FALSE	canonical	3	696	junction_1	308.820996959833	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATTACATGATTTGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	34419863	34272678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_34274215_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
ENSMUSG00000031586.18_1	chr8	-	1124	9	FSM	ENSMUSG00000031586.18	ENSMUST00000182987.8	1385	9	-23	284	2	-1	multi-exon	FALSE	canonical	3	376	junction_1	473.977962963469	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTTTAAGAAATGTGTT	NA	False	NA	NA	False	AATAAA	-25	NA	34419867	34274092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_34274215_34279419_34279524_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
ENSMUSG00000031586.18_45	chr8	-	1054	7	FSM	ENSMUSG00000031586.18	ENSMUST00000033995.14	1039	7	-37	22	-1	-22	multi-exon	FALSE	canonical	3	456	junction_1	404.856524654791	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAAAAAAAATGGTCTCAA	NA	False	NA	-29	True	AATAAA	-14	NA	34419870	34293988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_34294211_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
ENSMUSG00000031590.9_0	chr8	-	1042	9	FSM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	-13	10	-13	-10	multi-exon	FALSE	canonical	3	814	junction_1	88.4737778949221	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTTTTACAGAGTTCT	NA	False	NA	-17	True	AATAAA	-13	NA	41870124	41850505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
ENSMUSG00000031591.15_0	chr8	-	2177	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	128	468	-10	-4	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	1482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTCAGCAGTCATGCAT	7629	False	NA	-25	True	AATAAA	-14	NA	41827682	41793701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
ENSMUSG00000031591.15_8	chr8	-	2181	14	NIC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	-10	-4	combination_of_known_junctions	FALSE	canonical	3	76	junction_13	375.853820885935	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTCAGCAGTCATGCAT	7629	False	NA	-25	True	AATAAA	-14	NA	41827682	41793701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827542
ENSMUSG00000031592.11_11	chr8	+	6616	38	ISM	ENSMUSG00000031592.11	ENSMUST00000211247.2	6484	39	-27	957	-1	-957	5prime_fragment	FALSE	canonical	3	93	junction_5	36.5724712558759	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACTAATGCTTTATGAC	NA	False	NA	23	True	AATAAA	-17	NA	41692787	41784172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842
ENSMUSG00000031592.11_12	chr8	+	6499	37	ISM	ENSMUSG00000031592.11	ENSMUST00000045218.9	6624	38	-22	1209	-1	-957	5prime_fragment	FALSE	canonical	3	55	junction_5	37.9212960136916	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACTAATGCTTTATGAC	NA	False	NA	23	True	AATAAA	-17	NA	41692787	41784172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842
ENSMUSG00000031592.11_2	chr8	+	6759	39	FSM	ENSMUSG00000031592.11	ENSMUST00000211247.2	6484	39	-27	-248	-1	-4	multi-exon	FALSE	canonical	3	93	junction_5	36.1727924568649	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTATGCTTTTGGGAAA	NA	False	NA	4	True	AATAAA	-16	NA	41692787	41785377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842_41783958_41785019
ENSMUSG00000031592.11_3	chr8	+	6590	38	NIC	ENSMUSG00000031592.11	novel	6484	39	NA	NA	-5	-3	combination_of_known_splicesites	TRUE	canonical	3	32	junction_10	42.5841838011169	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTATGCTTTTGGGAAAT	NA	False	NA	5	True	AATAAA	-17	NA	41692783	41785378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842_41783958_41785019
ENSMUSG00000031592.11_4	chr8	+	6642	38	FSM	ENSMUSG00000031592.11	ENSMUST00000045218.9	6624	38	-22	4	-1	-4	multi-exon	FALSE	canonical	3	55	junction_5	37.5002702692963	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTATGCTTTTGGGAAA	NA	False	NA	4	True	AATAAA	-16	NA	41692787	41785377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842_41783958_41785019
ENSMUSG00000031594.10_0	chr8	-	955	6	NNC	ENSMUSG00000031594.10	novel	1120	8	NA	NA	5786	-9	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	3.55527776692624	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAACACACTCATGGCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	41662404	41644479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_41644718_41649994_41650183_41650350_41650440_41652688_41652787_41653481_41653642_41662222
ENSMUSG00000031596.16_0	chr8	+	3679	12	FSM	ENSMUSG00000031596.16	ENSMUST00000098816.10	3677	12	-1	-1	-1	1	multi-exon	FALSE	canonical	1	1	junction_4	2.4528613751331	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTCTCTGGTTGCTACA	NA	False	NA	NA	False	AATAAA	-12	NA	41315431	41371094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_41315595_41351973_41352366_41353092_41353249_41355535_41355702_41357482_41357617_41358541_41358765_41361092_41361233_41364031_41364135_41365516_41365723_41366999_41367167_41367956_41368066_41369374
ENSMUSG00000031596.16_1	chr8	+	4910	1	ISM	ENSMUSG00000031596.16	ENSMUST00000057784.15	7910	12	54741	246	18715	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTTACGATGGTTTAGT	NA	False	NA	NA	False	AATAAA	-8	NA	41370189	41375099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_41370200_41375100
ENSMUSG00000031600.12_0	chr8	+	1762	12	FSM	ENSMUSG00000031600.12	ENSMUST00000098817.4	6002	12	32	4208	12	6	multi-exon	FALSE	canonical	3	191	junction_7	12.6869491086687	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTAATTTTTAATATTTT	NA	False	NA	19	True	ATTAAA	-19	NA	40964855	40999590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_40965275_40979967_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40994065_40994135_40996850_40996995_40997984_40998066_40999316
ENSMUSG00000031600.12_17	chr8	+	3237	1	ISM	ENSMUSG00000031600.12	ENSMUST00000098817.4	6002	12	35737	1	4096	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGCCTTGGTTGTGGTGT	NA	False	NA	11	True	NA	NA	NA	41000560	41003797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_41000600_41003800
ENSMUSG00000031600.12_2	chr8	+	4465	11	NIC	ENSMUSG00000031600.12	novel	6002	12	NA	NA	20	1	intron_retention	FALSE	canonical	3	191	junction_7	13.080137613955	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTAGCTAATTTTTAAT	NA	False	NA	14	True	ATTAAA	-14	NA	40964863	40999585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_40965275_40979967_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40994065_40996995_40997984_40998066_40999316
ENSMUSG00000031601.17_1	chr8	-	2582	7	FSM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	31	2	-1	0	multi-exon	FALSE	canonical	3	422	junction_2	67.4388612003495	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGTTGTGACTGATGGC	NA	False	NA	-3	True	AATAAA	-21	NA	40964764	40945582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
ENSMUSG00000031601.17_2	chr8	-	2614	7	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	195.288177374418	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTGTGACTGATGG	NA	False	NA	-4	True	AATAAA	-20	NA	40964347	40945583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964130
ENSMUSG00000031601.17_26	chr8	-	733	3	FSM	ENSMUSG00000031601.17	ENSMUST00000146280.2	726	3	-7	0	-7	0	multi-exon	FALSE	canonical	3	487	junction_2	66.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTAGTTATAGAGA	NA	False	NA	-4	True	AATAAA	-15	NA	40964770	40960358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_40960690_40963055_40963268_40964580
ENSMUSG00000031601.17_3	chr8	-	3460	6	FSM	ENSMUSG00000031601.17	ENSMUST00000149992.2	2982	6	15	-493	15	0	multi-exon	FALSE	canonical	3	422	junction_2	73.8495768437437	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTGTGACTGATGG	NA	False	NA	-4	True	AATAAA	-20	NA	40964330	40945583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055
ENSMUSG00000031604.11_0	chr8	-	1820	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	216	8	2	-8	multi-exon	FALSE	canonical	3	690	junction_2	21.3822356174466	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATAAAGGAATGGTTCTG	NA	False	NA	-25	True	ATTAAA	-10	NA	65186610	65171180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
ENSMUSG00000031604.11_2	chr8	-	1671	5	NIC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	2	-8	combination_of_known_splicesites	FALSE	canonical	3	28	junction_3	300.648777645944	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATAAAGGAATGGTTCTG	NA	False	NA	-25	True	ATTAAA	-10	NA	65186610	65171180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_65172216_65173375_65173531_65175497_65175625_65180657_65180943_65186541
ENSMUSG00000031604.11_5	chr8	-	1719	5	ISM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	5918	6	3185	-6	3prime_fragment	TRUE	canonical	3	690	junction_2	12.9034879005639	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGGAATGGTTCTGTT	NA	False	NA	-23	True	ATTAAA	-12	NA	65180908	65171178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657
ENSMUSG00000031605.9_1	chr8	-	3170	15	FSM	ENSMUSG00000031605.9	ENSMUST00000034017.9	3412	15	63	179	-30	-6	multi-exon	FALSE	canonical	1	64	junction_10	38.1758150815782	337	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACGTCCTTGGTTTTACC	NA	False	NA	-8	True	AATAAA	-22	NA	65302606	65192887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_65194009_65195988_65196133_65202065_65202207_65202728_65202858_65204762_65204865_65205682_65205881_65207318_65207437_65211125_65211276_65212766_65212884_65217156_65217267_65232731_65232895_65264331_65264454_65275642_65275750_65287094_65287221_65302284
ENSMUSG00000031608.14_1	chr8	-	4311	12	FSM	ENSMUSG00000031608.14	ENSMUST00000034021.12	4313	12	-3	5	-2	-5	multi-exon	FALSE	canonical	3	53	junction_6	43.6895509190027	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCATAGCTTTTCAGTGC	NA	False	NA	-8	True	AATAAA	-13	NA	58106068	57976866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995545_57995729_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
ENSMUSG00000031608.14_2	chr8	-	4315	12	FSM	ENSMUSG00000031608.14	ENSMUST00000110316.3	3413	12	-31	-871	-2	-1	multi-exon	FALSE	canonical	3	93	junction_6	28.2342620537355	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGCTTTTCAGTGCTTGT	NA	False	NA	-4	True	AATAAA	-17	NA	58106068	57976862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995868_57996052_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
ENSMUSG00000031608.14_4	chr8	-	1453	1	ISM	ENSMUSG00000031608.14	ENSMUST00000034021.12	4313	12	127751	0	13173	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTTTCAGTGCTTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	57978314	57976861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_57976900_57978300
ENSMUSG00000031609.4_0	chr8	-	1157	4	FSM	ENSMUSG00000031609.4	ENSMUST00000034022.4	1178	4	21	0	21	0	multi-exon	FALSE	canonical	3	1617	junction_3	52.2961651451508	976	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTGCTTCAGCCTGTTT	NA	False	NA	97	True	AATAAA	-14	NA	57940873	57935740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_57936085_57938075_57938175_57938543_57938670_57940285
ENSMUSG00000031613.10_1	chr8	+	1683	7	FSM	ENSMUSG00000031613.10	ENSMUST00000034026.10	1683	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	3.18416219575713	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAATTGCCTATTCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	56747619	56774078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_56747748_56747973_56748098_56751390_56751498_56760628_56760726_56770784_56770862_56772027_56772192_56773092
ENSMUSG00000031613.10_2	chr8	+	3325	3	ISM	ENSMUSG00000031613.10	ENSMUST00000034026.10	1683	7	-25	19640	-25	-19640	5prime_fragment	FALSE	canonical	3	14	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTCTCGAAAAACCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56747594	56754438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_56747748_56747973_56748098_56751390
ENSMUSG00000031613.10_5	chr8	+	606	1	ISM	ENSMUSG00000031613.10	ENSMUST00000034026.10	1683	7	25853	0	25853	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAATTGCCTATTCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	56773472	56774078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_56773500_56774100
ENSMUSG00000031616.8_0	chr8	-	3632	8	FSM	ENSMUSG00000031616.8	ENSMUST00000034029.8	3625	8	-9	2	-9	-2	multi-exon	FALSE	canonical	0	0	junction_5	1.1780301787479	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAATTTTCTGTGGTTGTC	NA	False	NA	NA	False	TATAAA	-29	NA	78451074	78389661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_78391746_78393951_78394061_78394427_78394562_78398145_78398299_78401541_78401741_78415697_78415826_78446656_78447132_78450724
ENSMUSG00000031617.17_0	chr8	-	2647	10	FSM	ENSMUSG00000031617.17	ENSMUST00000034030.15	2678	10	30	1	30	-1	multi-exon	FALSE	canonical	3	71	junction_5	10.9927024053615	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACTCTTACGTGTCTTC	NA	False	NA	-5	True	TTTAAA	-5	NA	78337252	78322611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250_78331457_78332792_78332830_78332915_78333047_78336731
ENSMUSG00000031617.17_1	chr8	-	2399	11	NIC	ENSMUSG00000031617.17	novel	2678	10	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	23.2381152419898	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTCTTACGTGTCTTCT	NA	False	NA	-4	True	TTTAAA	-6	NA	78337345	78322610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250_78331457_78332792_78332830_78332915_78333047_78336731_78336949_78337290
ENSMUSG00000031617.17_2	chr8	-	3973	9	NIC	ENSMUSG00000031617.17	novel	2678	10	NA	NA	41	0	intron_retention	FALSE	canonical	3	71	junction_5	11.596739843594	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTCTTACGTGTCTTCT	NA	False	NA	-4	True	TTTAAA	-6	NA	78337241	78322610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250_78332830_78332915_78333047_78336731
ENSMUSG00000031617.17_6	chr8	-	1951	7	ISM	ENSMUSG00000031617.17	ENSMUST00000034030.15	2678	10	5834	0	5834	0	3prime_fragment	FALSE	canonical	3	71	junction_5	12.6018076304773	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTCTTACGTGTCTTCT	NA	False	NA	-4	True	TTTAAA	-6	NA	78331448	78322610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250
ENSMUSG00000031617.17_7	chr8	-	1029	1	ISM	ENSMUSG00000031617.17	ENSMUST00000034030.15	2678	10	13643	0	13643	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTCTTACGTGTCTTCT	NA	False	NA	-4	True	TTTAAA	-6	NA	78323639	78322610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_78322600_78323600
ENSMUSG00000031618.14_1	chr8	+	5649	9	FSM	ENSMUSG00000031618.14	ENSMUST00000109912.8	5675	9	25	1	25	-1	multi-exon	FALSE	canonical	0	0	junction_1	2.17944947177034	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCACCTGTTGTCCTGGA	NA	False	NA	NA	False	NA	NA	NA	77628940	77971635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_77629169_77634898_77636658_77812155_77812296_77881830_77881948_77912404_77912744_77914148_77914294_77937272_77937404_77944056_77944215_77969003
ENSMUSG00000031622.17_0	chr8	+	1014	7	FSM	ENSMUSG00000031622.17	ENSMUST00000109950.5	1024	7	5	5	0	-2	multi-exon	FALSE	canonical	3	644	junction_5	27.2197844713485	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATTTAGTTATGTGCA	NA	False	NA	19	True	AATAAA	-16	NA	73449917	73466529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73466357
ENSMUSG00000031622.17_2	chr8	+	4112	19	FSM	ENSMUSG00000031622.17	ENSMUST00000004494.16	4115	19	2	1	0	-1	multi-exon	TRUE	canonical	3	31	junction_6	282.896831519815	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTCAGGGTCCTTCGT	NA	False	NA	25	True	ATTAAA	-16	NA	73449917	73484828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73468101_73468192_73468437_73468557_73471085_73471294_73471521_73471639_73473037_73473277_73474312_73474497_73476346_73476897_73477063_73477234_73479794_73479969_73480172_73480266_73483100_73483196_73483475_73483681_73483802
ENSMUSG00000031627.10_0	chr8	+	2325	9	FSM	ENSMUSG00000031627.10	ENSMUST00000034041.9	2497	9	-12	184	-12	-172	multi-exon	FALSE	canonical	0	0	junction_1	0.707106781186548	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCAAATTTATAATTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	47192754	47300309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_47192972_47246527_47246621_47259505_47259606_47260256_47260434_47260739_47260787_47271825_47271944_47290708_47290874_47297855_47297903_47298948
ENSMUSG00000031628.10_0	chr8	+	2469	7	FSM	ENSMUSG00000031628.10	ENSMUST00000211115.2	2601	7	125	7	9	-7	multi-exon	FALSE	canonical	3	221	junction_1	22.2816566310098	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTATCAGTGTATTTGA	NA	False	NA	14	True	CATAAA	-10	NA	47070450	47092717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ENSMUSG00000031628.10_1	chr8	+	2446	7	FSM	ENSMUSG00000031628.10	ENSMUST00000093517.7	1520	7	39	-965	-8	-7	multi-exon	FALSE	canonical	3	47	junction_1	80.3189821205977	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTATCAGTGTATTTGA	NA	False	NA	14	True	CATAAA	-10	NA	47070468	47092717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_47070532_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ENSMUSG00000031628.10_15	chr8	+	2279	5	ISM	ENSMUSG00000031628.10	ENSMUST00000211115.2	2601	7	15062	7	14911	-7	3prime_fragment	FALSE	canonical	3	230	junction_4	21.683807322516	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTATCAGTGTATTTGA	NA	False	NA	14	True	CATAAA	-10	NA	47085387	47092717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ENSMUSG00000031628.10_19	chr8	+	1511	1	ISM	ENSMUSG00000031628.10	ENSMUST00000211115.2	2601	7	20881	7	20730	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTATCAGTGTATTTGA	NA	False	NA	14	True	CATAAA	-10	NA	47091206	47092717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_47091200_47092700
ENSMUSG00000031629.15_0	chr8	+	1513	13	FSM	ENSMUSG00000031629.15	ENSMUST00000034045.15	2931	13	42	1376	1	253	multi-exon	FALSE	canonical	3	263	junction_11	27.7942589995368	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGCAAGCATAGAATGAT	NA	False	NA	3	True	AATAAA	-19	NA	47005104	47031666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
ENSMUSG00000031629.15_16	chr8	+	1497	13	NIC	ENSMUSG00000031629.15	novel	2931	13	NA	NA	0	251	combination_of_known_junctions	FALSE	canonical	3	34	junction_5	79.2867510299728	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAATGCAAGCATAGAATG	NA	False	NA	1	True	AATAAA	-17	NA	47005103	47031664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014859_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
ENSMUSG00000031629.15_2	chr8	+	1626	14	FSM	ENSMUSG00000031629.15	ENSMUST00000135432.8	3010	14	14	1370	0	259	multi-exon	FALSE	canonical	3	36	junction_3	96.1013395100261	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATAGAATGATCCTGGT	NA	False	NA	9	True	AATAAA	-25	NA	47005103	47031672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
ENSMUSG00000031629.15_5	chr8	+	960	6	FSM	ENSMUSG00000031629.15	ENSMUST00000211217.2	997	6	19	18	2	-18	multi-exon	FALSE	canonical	3	283	junction_2	30.0865418418269	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGGTTCTTTTTAGAATG	NA	False	NA	3	True	NA	NA	NA	47005091	47016016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452
ENSMUSG00000031629.15_7	chr8	+	2831	7	ISM	ENSMUSG00000031629.15	ENSMUST00000135432.8	3010	14	-4	15267	-4	1741	5prime_fragment	FALSE	canonical	3	36	junction_3	136.084532552381	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGAATCAGCACCTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	47005085	47017775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47014812_47014874_47015452
ENSMUSG00000031631.16_0	chr8	+	4564	5	NIC	ENSMUSG00000031631.16	novel	4521	4	NA	NA	10	-85	intron_retention	FALSE	canonical	2	6	junction_1	21.868927728629	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTTAAAAAATGTCCTAG	NA	False	NA	-71	True	AATAAA	-26	NA	46604817	46648538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_46604951_46622595_46623690_46634754_46635024_46644616_46644768_46645621
ENSMUSG00000031631.16_1	chr8	+	4696	6	NIC	ENSMUSG00000031631.16	novel	4619	5	NA	NA	5	-8	intron_retention	FALSE	canonical	3	9	junction_1	20.9990475974507	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGAACCAAGTTTTGAT	NA	False	NA	6	True	AATAAA	-7	NA	46616733	46648615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_46616787_46617798_46617934_46622595_46623690_46634754_46635024_46644616_46644768_46645621
ENSMUSG00000031631.16_10	chr8	+	4236	4	FSM	ENSMUSG00000031631.16	ENSMUST00000164504.2	4521	4	275	10	275	-8	multi-exon	FALSE	canonical	3	51	junction_2	3.55902608401044	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGAACCAAGTTTTGAT	5431	False	NA	6	True	AATAAA	-7	NA	46622867	46648615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_46623690_46634754_46635024_46644616_46644768_46645621
ENSMUSG00000031631.16_13	chr8	+	2528	1	ISM	ENSMUSG00000031631.16	ENSMUST00000034048.13	4619	5	29400	12	23495	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGAACCAAGTTTTGAT	7605	False	NA	6	True	AATAAA	-7	NA	46646087	46648615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_46646100_46648600
ENSMUSG00000031631.16_2	chr8	+	4562	5	FSM	ENSMUSG00000031631.16	ENSMUST00000034048.13	4619	5	45	12	4	-8	multi-exon	FALSE	canonical	3	40	junction_1	7.58287544405155	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGAACCAAGTTTTGAT	NA	False	NA	6	True	AATAAA	-7	NA	46616732	46648615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_46616787_46622595_46623690_46634754_46635024_46644616_46644768_46645621
ENSMUSG00000031631.16_3	chr8	+	4957	5	NNC	ENSMUSG00000031631.16	novel	4619	5	NA	NA	1	-8	intron_retention	FALSE	canonical	3	13	junction_1	18.8729303501073	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGAACCAAGTTTTGAT	NA	False	NA	6	True	AATAAA	-7	NA	46616752	46648615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_46617202_46622595_46623690_46634754_46635024_46644616_46644768_46645621
ENSMUSG00000031631.16_7	chr8	+	4786	6	NIC	ENSMUSG00000031631.16	novel	2043	6	NA	NA	-8	-2	intron_retention	FALSE	canonical	3	5	junction_1	22.1774660410066	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAAGTTTTGATTCTGTT	NA	False	NA	12	True	AATAAA	-13	NA	46616763	46648621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_46616901_46617798_46617934_46622595_46623690_46634754_46635024_46644616_46644768_46645621
ENSMUSG00000031631.16_8	chr8	+	4656	5	ISM	ENSMUSG00000031631.16	ENSMUST00000110376.8	2043	6	-19	8	1	-8	intron_retention	FALSE	canonical	2	6	junction_1	21.868927728629	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGAACCAAGTTTTGAT	NA	False	NA	6	True	AATAAA	-7	NA	46616752	46648615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_46616901_46622595_46623690_46634754_46635024_46644616_46644768_46645621
ENSMUSG00000031633.5_0	chr8	-	1282	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	257	386	3	-386	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	3810	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAATACACTTTATCTCC	NA	False	NA	NA	False	AATAAA	-5	NA	46664064	46660219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
ENSMUSG00000031634.14_0	chr8	+	1531	12	FSM	ENSMUSG00000031634.14	ENSMUST00000034051.7	1640	12	8	101	2	0	multi-exon	FALSE	canonical	3	163	junction_6	20.6765727613893	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTAGCTGTGATTTAA	8868	False	NA	3	True	AATAAA	-16	NA	46428572	46449894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
ENSMUSG00000031634.14_3	chr8	+	1507	12	NIC	ENSMUSG00000031634.14	novel	1640	12	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	58.4742650182239	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTAGCTGTGATTTAA	8867	False	NA	3	True	AATAAA	-16	NA	46428571	46449894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_46428626_46432245_46432333_46433351_46433505_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
ENSMUSG00000031634.14_6	chr8	+	1607	11	FSM	ENSMUSG00000031634.14	ENSMUST00000130412.8	1613	11	5	1	-5	-1	multi-exon	FALSE	canonical	3	163	junction_5	20.5873747719324	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCTTAGCTGTGATTTA	8871	False	NA	2	True	AATAAA	-15	NA	46428575	46449893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_46428626_46432245_46432333_46433351_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
ENSMUSG00000031641.15_0	chr8	+	1091	5	FSM	ENSMUSG00000031641.15	ENSMUST00000034058.14	4309	5	7	3211	6	94	multi-exon	FALSE	canonical	3	156	junction_4	10.8483869768736	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTGTTGCTAAGAGTATT	2573	False	NA	15	True	ATTAAA	-15	NA	61940774	61956517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_61941025_61942973_61943095_61944578_61944713_61948101_61948237_61956066
ENSMUSG00000031641.15_6	chr8	+	2647	1	ISM	ENSMUSG00000031641.15	ENSMUST00000034058.14	4309	5	16313	1	9218	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTGGCCTCCTCCTCTC	5052	False	NA	NA	False	ATTAAA	-28	NA	61957080	61959727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_61957100_61959700
ENSMUSG00000031642.10_0	chr8	+	5148	12	FSM	ENSMUSG00000031642.10	ENSMUST00000034060.7	5479	12	327	4	-45	-4	multi-exon	FALSE	canonical	3	41	junction_9	7.49876022810956	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCTAGGCCCTTTTTTT	NA	False	NA	3	True	ATTAAA	-14	NA	61677232	61849101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_61677381_61678865_61679353_61782252_61782529_61782956_61783053_61802433_61802737_61806771_61806883_61814621_61814807_61816108_61816280_61825541_61825802_61827042_61827402_61837610_61837964_61846702
ENSMUSG00000031642.10_11	chr8	+	2656	2	ISM	ENSMUSG00000031642.10	ENSMUST00000034060.7	5479	12	160804	1	23087	-1	3prime_fragment	FALSE	canonical	3	49	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTAGGCCCTTTTTTTTTT	NA	False	NA	6	True	ATTAAA	-17	NA	61837709	61849104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_61837964_61846702
ENSMUSG00000031642.10_12	chr8	+	2290	1	ISM	ENSMUSG00000031642.10	ENSMUST00000034060.7	5479	12	169904	6	32187	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTTCTAGGCCCTTTTT	NA	False	NA	1	True	ATTAAA	-12	NA	61846809	61849099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_61846800_61849100
ENSMUSG00000031642.10_20	chr8	+	3253	4	ISM	ENSMUSG00000031642.10	ENSMUST00000034060.7	5479	12	148752	6	11035	-6	3prime_fragment	FALSE	canonical	3	41	junction_1	3.77123616632825	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTTCTAGGCCCTTTTT	NA	False	NA	1	True	ATTAAA	-12	NA	61825657	61849099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_61825802_61827042_61827402_61837610_61837964_61846702
ENSMUSG00000031644.20_0	chr8	+	5380	33	FSM	ENSMUSG00000031644.20	ENSMUST00000034065.14	5401	33	17	4	12	3	multi-exon	FALSE	canonical	3	31	junction_16	13.1719028024618	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTATATCAGTTGTCCT	NA	False	NA	5	True	NA	NA	NA	61446245	61584376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61507553_61507657_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
ENSMUSG00000031644.20_1	chr8	+	5464	34	FSM	ENSMUSG00000031644.20	ENSMUST00000120689.8	5478	34	18	-4	13	-3	multi-exon	FALSE	canonical	3	7	junction_17	17.7121147315746	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTATATCAGTTGTCCTT	NA	False	NA	6	True	NA	NA	NA	61446246	61584377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61507553_61507657_61524784_61524869_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
ENSMUSG00000031644.20_2	chr8	+	5515	34	NIC	ENSMUSG00000031644.20	novel	5109	35	NA	NA	9	3	intron_retention	FALSE	canonical	3	24	junction_17	14.9073046478596	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTATATCAGTTGTCCT	NA	False	NA	5	True	NA	NA	NA	61446242	61584376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61503061_61503194_61507553_61507657_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
ENSMUSG00000031644.20_33	chr8	+	1606	4	ISM	ENSMUSG00000031644.20	ENSMUST00000120689.8	5478	34	130980	0	74340	0	3prime_fragment	FALSE	canonical	3	73	junction_3	9.62635271879577	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGAAGTATATCAGTTGT	NA	False	NA	2	True	NA	NA	NA	61577208	61584373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_61577355_61578029_61578161_61578997_61579131_61583177
ENSMUSG00000031644.20_5	chr8	+	5606	35	FSM	ENSMUSG00000031644.20	ENSMUST00000211672.2	5109	35	-62	-435	3	-3	multi-exon	TRUE	canonical	3	7	junction_18	18.7248331678183	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTATATCAGTTGTCCTT	NA	False	NA	6	True	NA	NA	NA	61446236	61584377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61503061_61503194_61507553_61507657_61524784_61524869_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
ENSMUSG00000031644.20_7	chr8	+	5091	34	NIC	ENSMUSG00000031644.20	novel	5478	34	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	16.5039439313534	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGAAGTATATCAGTTGT	NA	False	NA	2	True	NA	NA	NA	61446246	61584373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_61446391_61446675_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61507553_61507657_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
ENSMUSG00000031647.11_0	chr8	+	2099	3	FSM	ENSMUSG00000031647.11	ENSMUST00000160719.8	6335	3	-27	4263	6	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTCTGTGTCACCTTTG	NA	False	NA	NA	False	NA	NA	NA	61085866	61125500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_61086093_61109493_61109924_61124057
ENSMUSG00000031651.6_0	chr8	-	810	1	ISM	ENSMUSG00000031651.6	ENSMUST00000059692.4	1850	6	10869	1	5976	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	-1	True	TATAAA	-18	NA	43583654	43582844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_43582800_43583700
ENSMUSG00000031651.6_17	chr8	-	1889	4	ISM	ENSMUSG00000031651.6	ENSMUST00000059692.4	1850	6	2033	1	-413	-1	3prime_fragment	FALSE	canonical	3	194	junction_3	20.4178571081514	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	-1	True	TATAAA	-18	NA	43592490	43582844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603
ENSMUSG00000031651.6_2	chr8	-	2110	2	ISM	ENSMUSG00000031651.6	ENSMUST00000059692.4	1850	6	3982	1	-911	-1	intron_retention	FALSE	canonical	3	244	junction_1	0	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	-1	True	TATAAA	-18	NA	43590541	43582844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_43583726_43589312
ENSMUSG00000031651.6_3	chr8	-	1764	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38775	-1	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_5	54.8005660629188	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	-1	True	TATAAA	-18	NA	43633298	43582844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43633233
ENSMUSG00000031652.12_0	chr8	-	3270	7	FSM	ENSMUSG00000031652.12	ENSMUST00000034074.8	6469	7	2	3197	2	-17	multi-exon	FALSE	canonical	3	315	junction_2	32.4790530786981	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATTAAGAAAAAA	NA	False	NA	NA	False	AATAAA	-29	NA	87611884	87570963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_87571670_87573442_87573551_87575074_87575183_87578252_87578350_87579786_87579918_87587053_87588739_87611449
ENSMUSG00000031652.12_2	chr8	-	2692	1	ISM	ENSMUSG00000031652.12	ENSMUST00000034074.8	6469	7	41428	0	215	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGAGGGTGGTGCTT	NA	False	NA	-8	True	NA	NA	NA	87570458	87567766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_87567800_87570500
ENSMUSG00000031652.12_3	chr8	-	5215	6	ISM	ENSMUSG00000031652.12	ENSMUST00000034074.8	6469	7	23960	5	-8878	-5	3prime_fragment	FALSE	canonical	3	315	junction_2	34.9433827784317	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGAGAGCTGGAGGGTGG	NA	False	NA	-13	True	NA	NA	NA	87587926	87567771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_87571670_87573442_87573551_87575074_87575183_87578252_87578350_87579786_87579918_87587053
ENSMUSG00000031654.17_0	chr8	-	882	1	ISM	ENSMUSG00000031654.17	ENSMUST00000034076.16	2800	3	2306	1017	765	-184	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTCTGAAACAGCTTTC	2406	False	NA	NA	False	AATAAA	-18	NA	88196931	88196049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_88196000_88196900
ENSMUSG00000031654.17_1	chr8	-	1679	3	FSM	ENSMUSG00000031654.17	ENSMUST00000034076.16	2800	3	104	1017	104	-184	multi-exon	FALSE	canonical	3	8	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTCTGAAACAGCTTTC	204	False	NA	NA	False	AATAAA	-18	NA	88199133	88196049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_88197080_88198319_88198440_88198604
ENSMUSG00000031657.17_0	chr8	+	3235	15	FSM	ENSMUSG00000031657.17	ENSMUST00000034079.14	3251	15	9	7	8	-7	multi-exon	FALSE	canonical	3	239	junction_7	19.6926641267291	589	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGATGTTTTGTGTCAT	NA	False	NA	NA	False	AATAAA	-9	NA	88864491	88898648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486
ENSMUSG00000031659.14_0	chr8	+	6119	28	FSM	ENSMUSG00000031659.14	ENSMUST00000169037.9	5198	28	1	-922	1	0	multi-exon	FALSE	canonical	0	0	junction_1	1.30526001383008	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGGTGTTTTGAATGAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	88999031	89056589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_88999242_89021654_89021763_89022199_89022308_89032977_89033399_89035268_89035473_89036319_89036488_89037161_89037312_89037626_89037776_89038827_89038940_89040716_89040845_89042084_89042244_89042375_89042509_89044482_89044675_89044931_89044967_89045426_89045508_89045701_89045775_89046773_89046872_89048411_89048497_89048724_89048851_89049562_89049662_89050259_89050436_89051061_89051228_89051386_89051543_89051994_89052142_89052723_89052829_89053018_89053134_89054000_89054126_89054299
ENSMUSG00000031659.14_1	chr8	+	4708	7	NIC	ENSMUSG00000031659.14	novel	5937	28	NA	NA	10558	0	intron_retention	FALSE	canonical	0	0	junction_2	0.957427107756338	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTGTTTTGAATGAAAG	7741	False	NA	NA	False	ATTAAA	-15	NA	89049442	89056590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_89049662_89050259_89051228_89051386_89051543_89051994_89052829_89053018_89053134_89054000_89054126_89054299
ENSMUSG00000031659.14_3	chr8	+	2155	1	ISM	ENSMUSG00000031659.14	ENSMUST00000168545.8	5937	28	44815	1	15550	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGGTGTTTTGAATGAAA	1207	False	NA	NA	False	ATTAAA	-14	NA	89054434	89056589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_89054400_89056600
ENSMUSG00000031660.14_2	chr8	-	2162	17	FSM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	208	1255	28	473	multi-exon	TRUE	canonical	3	463	junction_12	36.2439650148821	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCTCGCTGGTGTGTCA	NA	False	NA	-8	True	AATAAA	-17	NA	89088614	89058941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
ENSMUSG00000031660.14_21	chr8	-	1990	16	ISM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	225	1747	45	0	5prime_fragment	FALSE	canonical	3	463	junction_11	32.0534276204936	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTCTTGTCTGGTTTGA	NA	False	NA	0	True	AATAAA	-35	NA	89088597	89059433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
ENSMUSG00000031660.14_6	chr8	-	2167	17	NIC	ENSMUSG00000031660.14	novel	3625	17	NA	NA	27	474	combination_of_known_junctions	FALSE	canonical	3	37	junction_4	122.717663765246	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCTCGCTGGTGTGTCAG	NA	False	NA	-7	True	AATAAA	-18	NA	89088615	89058940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_89059172_89059508_89059653_89060365_89060510_89060732_89060848_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
ENSMUSG00000031661.13_1	chr8	+	1762	10	FSM	ENSMUSG00000031661.13	ENSMUST00000034086.13	3035	10	-20	1293	-20	-12	multi-exon	FALSE	canonical	2	13	junction_7	4.46661138716484	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTTGTGGGGATCATGTAA	NA	False	NA	NA	False	AGTAAA	-12	NA	89247961	89318953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_89248160_89248274_89248308_89248914_89249049_89300825_89300893_89309830_89309938_89311781_89311878_89315781_89315930_89316355_89316441_89317350_89317479_89318187
ENSMUSG00000031661.13_7	chr8	+	2684	1	ISM	ENSMUSG00000031661.13	ENSMUST00000169179.3	4081	8	64543	5	9391	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAATATCTCCCATTTAA	NA	False	NA	NA	False	AATAAA	-10	NA	89318823	89321507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_89318800_89321500
ENSMUSG00000031662.9_0	chr8	-	1406	4	FSM	ENSMUSG00000031662.9	ENSMUST00000034087.9	1699	4	28	265	1	-265	multi-exon	FALSE	canonical	3	13	junction_1	1.63299316185545	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGCTTGTGAGACTCCA	NA	False	NA	0	True	AATAAA	-27	NA	89362728	89353455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_89354456_89356541_89356694_89358396_89358536_89362613
ENSMUSG00000031665.8_0	chr8	-	5524	3	ISM	ENSMUSG00000031665.8	ENSMUST00000034090.8	5265	4	1308	18	1308	-18	3prime_fragment	FALSE	canonical	3	240	junction_1	16.5	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAGATAAAACAACATATT	NA	False	NA	NA	False	AATACA	-11	NA	89769482	89753880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_89755447_89756571_89760027_89768979
ENSMUSG00000031665.8_1	chr8	-	3718	2	ISM	ENSMUSG00000031665.8	ENSMUST00000034090.8	5265	4	12067	18	12067	-18	3prime_fragment	FALSE	canonical	3	240	junction_1	0	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAGATAAAACAACATATT	NA	False	NA	NA	False	AATACA	-11	NA	89758723	89753880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_89755447_89756571
ENSMUSG00000031665.8_12	chr8	-	5266	4	FSM	ENSMUSG00000031665.8	ENSMUST00000034090.8	5265	4	-19	18	-19	-18	multi-exon	FALSE	canonical	3	24	junction_3	110.426446107805	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAGATAAAACAACATATT	NA	False	NA	NA	False	AATACA	-11	NA	89770809	89753880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_89755447_89756571_89760027_89768979_89769073_89770657
ENSMUSG00000031665.8_2	chr8	-	5150	4	NNC	ENSMUSG00000031665.8	novel	5265	4	NA	NA	651	-18	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_3	100.141011689628	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAGATAAAACAACATATT	NA	False	NA	NA	False	AATACA	-11	NA	89770139	89753880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_89755447_89756571_89760027_89768979_89769073_89770103
ENSMUSG00000031665.8_7	chr8	-	1347	1	ISM	ENSMUSG00000031665.8	ENSMUST00000034090.8	5265	4	15563	18	15563	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAGATAAAACAACATATT	NA	False	NA	NA	False	AATACA	-11	NA	89755227	89753880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_89753900_89755200
ENSMUSG00000031666.16_0	chr8	+	4882	22	FSM	ENSMUSG00000031666.16	ENSMUST00000034091.8	4925	22	35	8	-2	-6	multi-exon	FALSE	canonical	3	13	junction_12	4.6442610819949	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTAGTCTCTGTTTAG	NA	False	NA	NA	False	AATAAA	-7	NA	91796719	91850464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_91797035_91800770_91800902_91802542_91802744_91805507_91805573_91809926_91810056_91812060_91812222_91812302_91812368_91813610_91813798_91816682_91816850_91822176_91822287_91823391_91823496_91826667_91826806_91827975_91828141_91828825_91828938_91832907_91833175_91833330_91833612_91833685_91833863_91839145_91839218_91840612_91840713_91841668_91841878_91842289_91842455_91848903
ENSMUSG00000031666.16_1	chr8	+	4378	17	ISM	ENSMUSG00000031666.16	ENSMUST00000034091.8	4925	22	14	15028	1	-5233	5prime_fragment	FALSE	canonical	3	13	junction_12	4.47169920164584	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTATTCATTGTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	91796698	91835444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91797035_91800770_91800902_91802542_91802744_91805507_91805573_91809926_91810056_91812060_91812222_91812302_91812368_91813610_91813798_91816682_91816850_91822176_91822287_91823391_91823496_91826667_91826806_91827975_91828141_91828825_91828938_91832907_91833175_91833330_91833612_91833685
ENSMUSG00000031666.16_11	chr8	+	1096	1	ISM	ENSMUSG00000031666.16	ENSMUST00000034091.8	4925	22	52684	8	7612	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTAGTCTCTGTTTAG	NA	False	NA	NA	False	AATAAA	-7	NA	91849368	91850464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91849400_91850500
ENSMUSG00000031666.16_9	chr8	+	2765	8	ISM	ENSMUSG00000031666.16	ENSMUST00000209518.2	4792	22	36189	6	-187	-6	3prime_fragment	FALSE	canonical	3	16	junction_7	4.14039335605413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTAGTCTCTGTTTAG	NA	False	NA	NA	False	AATAAA	-7	NA	91832974	91850464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91833175_91833330_91833612_91833685_91833863_91839145_91839218_91840612_91840713_91841668_91841878_91842289_91842455_91848903
ENSMUSG00000031667.17_0	chr8	-	1729	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	30	320	0	-320	multi-exon	FALSE	canonical	3	258	junction_9	63.7020456287233	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAGGAAAGTAATGCTCC	NA	False	NA	-11	True	AATAAA	-25	NA	91860625	91850516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
ENSMUSG00000031667.17_1	chr8	-	1732	10	FSM	ENSMUSG00000031667.17	ENSMUST00000109609.9	1171	10	25	-586	-1	-314	multi-exon	FALSE	canonical	3	139	junction_9	96.0081015100057	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTAATGCTCCTTTTCA	NA	False	NA	-5	True	AATAAA	-31	NA	91860626	91850510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91860527
ENSMUSG00000031667.17_2	chr8	-	1807	11	FSM	ENSMUSG00000031667.17	ENSMUST00000120213.9	2200	11	7	386	7	-316	multi-exon	FALSE	canonical	3	60	junction_9	146.200581394193	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAAGTAATGCTCCTTTT	NA	False	NA	-7	True	AATAAA	-29	NA	91860618	91850512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91858550_91858632_91860527
ENSMUSG00000031667.17_3	chr8	-	2033	10	NNC	ENSMUSG00000031667.17	novel	1171	10	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_1	135.177889199362	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATAATCAATAGCTGTTAA	NA	False	NA	-81	True	AATAAA	-10	NA	91860618	91850204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_91851310_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91860527
ENSMUSG00000031667.17_5	chr8	-	2113	11	NIC	ENSMUSG00000031667.17	novel	2200	11	NA	NA	5	-8	combination_of_known_splicesites	TRUE	canonical	3	13	junction_9	155.801283691759	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATAATCAATAGCTGTTAA	NA	False	NA	-81	True	AATAAA	-10	NA	91860620	91850204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91858550_91858632_91860527
ENSMUSG00000031667.17_7	chr8	-	1731	10	NNC	ENSMUSG00000031667.17	novel	2079	10	NA	NA	1	-320	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_1	118.014228060397	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAGGAAAGTAATGCTCC	NA	False	NA	-11	True	AATAAA	-25	NA	91860624	91850516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_91851310_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
ENSMUSG00000031668.15_0	chr6	+	4494	17	FSM	ENSMUSG00000031668.15	ENSMUST00000034093.15	4513	17	11	8	11	-8	multi-exon	FALSE	canonical	3	52	junction_8	9.41408519188137	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTAATAGTTGACTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	70821509	70882221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_70822006_70835370_70835501_70853661_70853857_70855818_70855953_70858467_70858703_70859248_70859412_70860578_70860720_70861753_70861877_70862144_70862366_70864783_70864897_70866458_70866582_70867048_70867199_70869338_70870126_70873899_70874068_70877215_70877318_70878388_70878452_70881071
ENSMUSG00000031668.15_16	chr6	+	1833	5	ISM	ENSMUSG00000031668.15	ENSMUST00000034093.15	4513	17	48277	8	-3972	-8	3prime_fragment	FALSE	canonical	3	64	junction_3	8.38152730712011	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTAATAGTTGACTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	70869775	70882221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_70870126_70873899_70874068_70877215_70877318_70878388_70878452_70881071
ENSMUSG00000031669.11_0	chr8	+	2381	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	75	63	-26	-63	multi-exon	FALSE	canonical	3	97	junction_2	2	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTTAGCATAAAATTGTC	NA	False	NA	NA	False	AATAAA	-20	NA	96360155	96371625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_96360412_96364437_96364672_96369734
ENSMUSG00000031669.11_1	chr8	+	6974	2	FSM	ENSMUSG00000031669.11	ENSMUST00000212434.2	654	2	-43	-6277	-43	-550	multi-exon	FALSE	canonical	3	101	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGTTTTTCTTTAAAGA	NA	False	NA	14	True	AATAAA	-14	NA	96360138	96371138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_96360412_96364437
ENSMUSG00000031669.11_2	chr8	+	1523	1	ISM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	10021	64	9920	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTCTTAGCATAAAATTGT	NA	False	NA	NA	False	AATAAA	-19	NA	96370101	96371624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_96370100_96371600
ENSMUSG00000031671.12_1	chr8	+	1662	7	FSM	ENSMUSG00000031671.12	ENSMUST00000034096.6	1707	7	34	11	0	-11	multi-exon	FALSE	canonical	3	236	junction_4	62.8342175004105	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTGAGAAGTTCAAACT	NA	False	NA	28	True	AATAAA	-15	NA	96442542	96445627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_96442899_96442980_96443123_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
ENSMUSG00000031671.12_12	chr8	+	1354	7	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	1	-11	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	132.221720353856	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTGAGAAGTTCAAACT	NA	False	NA	28	True	AATAAA	-15	NA	96442543	96445627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_96442592_96442980_96443123_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
ENSMUSG00000031671.12_16	chr8	+	2653	5	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	0	-11	intron_retention	FALSE	canonical	3	282	junction_1	51.8338692362436	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTGAGAAGTTCAAACT	NA	False	NA	28	True	AATAAA	-15	NA	96442542	96445627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_96442899_96442980_96443430_96443548_96444730_96444820_96444964_96445103
ENSMUSG00000031671.12_3	chr8	+	2541	6	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	0	-11	intron_retention	FALSE	canonical	3	282	junction_1	51.2312404690732	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTGAGAAGTTCAAACT	NA	False	NA	28	True	AATAAA	-15	NA	96442542	96445627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_96442899_96442980_96443123_96443234_96443430_96443548_96444730_96444820_96444964_96445103
ENSMUSG00000031671.12_5	chr8	+	2942	2	NIC	ENSMUSG00000031671.12	novel	774	4	NA	NA	-2	-16	intron_retention	FALSE	canonical	3	428	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCAACTTTGAGAAGTTC	NA	False	NA	23	True	AATAAA	-10	NA	96442540	96445622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_96444964_96445103
ENSMUSG00000031671.12_8	chr8	+	2623	5	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	0	-11	intron_retention	FALSE	canonical	3	305	junction_1	43.5280082245903	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTGAGAAGTTCAAACT	NA	False	NA	28	True	AATAAA	-15	NA	96442542	96445627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_96443123_96443234_96443430_96443548_96444730_96444820_96444964_96445103
ENSMUSG00000031672.9_0	chr8	-	2371	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	155	4	0	-4	multi-exon	FALSE	canonical	3	353	junction_1	94.2456731822753	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCCACTGTCTGCTTTTC	NA	False	NA	-8	True	AATAAA	-13	NA	96615020	96590765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUSG00000031672.9_5	chr8	-	845	1	ISM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	23566	3	3064	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCACTGTCTGCTTTTCT	NA	False	NA	-7	True	AATAAA	-14	NA	96591609	96590764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_96590800_96591600
ENSMUSG00000031681.17_0	chr8	-	2996	7	FSM	ENSMUSG00000031681.17	ENSMUST00000066091.14	3099	7	92	11	92	-11	multi-exon	FALSE	canonical	3	102	junction_2	13.1835335003767	258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTAAAAAATGTGTCATT	NA	False	NA	4	True	AATAAA	-22	NA	80126055	80065034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_80066422_80070282_80070540_80076219_80076442_80079958_80080076_80082840_80083099_80098412_80098994_80125881
ENSMUSG00000031683.17_1	chr8	-	488	4	FSM	ENSMUSG00000031683.17	ENSMUST00000051867.7	2107	4	39	1580	39	6	multi-exon	FALSE	canonical	3	383	junction_3	374.138417641861	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTCAGTCTTTATCATT	NA	False	NA	-1	True	NA	NA	NA	79547730	79534659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79547676
ENSMUSG00000031683.17_2	chr8	-	582	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	40	3170	40	2	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTCTCAGTCTTTAT	NA	False	NA	-5	True	NA	NA	NA	79547729	79534663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
ENSMUSG00000031684.12_10	chr8	+	3566	12	FSM	ENSMUSG00000031684.12	ENSMUST00000034111.10	3595	12	26	3	2	-2	multi-exon	FALSE	canonical	3	98	junction_5	15.4524062690615	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAATCTCTGGAAATGTCG	NA	False	NA	29	True	ATTAAA	-14	NA	79236022	79460629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
ENSMUSG00000031684.12_28	chr8	+	1754	1	ISM	ENSMUSG00000031684.12	ENSMUST00000209490.2	3485	10	222896	2	35074	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATCTCTGGAAATGTCGT	2	False	NA	30	True	ATTAAA	-15	NA	79458876	79460630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_79458900_79460600
ENSMUSG00000031688.5_0	chr8	-	3253	2	FSM	ENSMUSG00000031688.5	ENSMUST00000034115.5	3204	2	-49	0	-49	0	multi-exon	FALSE	canonical	2	3	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCAGTTTTTAATCATTT	NA	False	NA	NA	False	ATTAAA	-35	NA	79163323	79159638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_79162308_79162739
ENSMUSG00000031691.15_1	chr8	+	4829	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_1	70.9023193477399	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763547	85784209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85763607_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ENSMUSG00000031691.15_119	chr8	+	1580	1	ISM	ENSMUSG00000031691.15	ENSMUST00000093360.12	4863	25	19086	0	5793	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85782629	85784209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_85782600_85784200
ENSMUSG00000031691.15_2	chr8	+	4785	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	140	junction_1	62.568282144834	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763548	85784209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85763607_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ENSMUSG00000031691.15_4	chr8	+	4817	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	102	junction_20	83.055035301232	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763546	85784209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85763607_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ENSMUSG00000031691.15_40	chr8	+	4829	25	FSM	ENSMUSG00000031691.15	ENSMUST00000211601.2	2941	25	22	-1910	22	0	multi-exon	FALSE	canonical	3	53	junction_1	77.0544540496452	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763818	85784209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85763921_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ENSMUSG00000031691.15_41	chr8	+	4868	25	NIC	ENSMUSG00000031691.15	novel	2941	25	NA	NA	26	0	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	75.1550134167154	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763822	85784209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85763921_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ENSMUSG00000031691.15_45	chr8	+	4859	25	FSM	ENSMUSG00000031691.15	ENSMUST00000166592.2	4884	25	22	3	22	0	multi-exon	FALSE	canonical	3	53	junction_1	94.0795227306252	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763818	85784209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85763921_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ENSMUSG00000031691.15_46	chr8	+	4899	25	NIC	ENSMUSG00000031691.15	novel	4884	25	NA	NA	23	-2	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	92.5778951298131	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACACTTGGTGTCTCAT	NA	False	NA	12	True	AGTAAA	-14	NA	85763819	85784207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85763921_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ENSMUSG00000031691.15_6	chr8	+	4859	25	FSM	ENSMUSG00000031691.15	ENSMUST00000093360.12	4863	25	3	1	3	-1	multi-exon	TRUE	canonical	3	89	junction_1	89.272513111384	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACACTTGGTGTCTCATT	NA	False	NA	13	True	AGTAAA	-15	NA	85763546	85784208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85763607_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ENSMUSG00000031691.15_73	chr8	+	5245	24	ISM	ENSMUSG00000031691.15	ENSMUST00000211601.2	2941	25	691	-1909	142	-1	3prime_fragment	FALSE	canonical	3	298	junction_6	39.1204818260036	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACACTTGGTGTCTCATT	NA	False	NA	13	True	AGTAAA	-15	NA	85764487	85784208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
ENSMUSG00000031696.10_1	chr8	-	3176	17	FSM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	293	5	-40	-5	multi-exon	FALSE	canonical	3	1260	junction_3	108.704875695619	2382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATTTTGGATTATCTTT	NA	False	NA	-13	True	AATAAA	-10	NA	86026138	85987025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
ENSMUSG00000031696.10_2	chr8	-	3122	16	ISM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	4844	5	4505	-5	3prime_fragment	FALSE	canonical	3	1260	junction_3	107.371752958277	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATTTTGGATTATCTTT	NA	False	NA	-13	True	AATAAA	-10	NA	86021587	85987025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487
ENSMUSG00000031697.13_0	chr8	+	1164	7	FSM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	122	1	-10	0	multi-exon	FALSE	canonical	3	862	junction_2	81.7626986399598	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026541	86034699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_16	chr8	+	3819	5	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	7	-1	intron_retention	FALSE	canonical	3	972	junction_1	49.469687688523	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTAAATGTGTATGAGT	NA	False	NA	7	True	AATAAA	-15	NA	86026558	86034698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_2	chr8	+	2722	6	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-10	0	intron_retention	FALSE	canonical	3	972	junction_2	56.9160785718763	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	9	True	AATAAA	-17	NA	86026541	86034700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_86026622_86027737_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_3	chr8	+	1037	6	FSM	ENSMUSG00000031697.13	ENSMUST00000170141.3	1466	6	221	208	-13	0	multi-exon	FALSE	canonical	3	116	junction_1	361.716463545689	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026538	86034699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_86026622_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_6	chr8	+	999	6	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	109	junction_2	378.03089820807	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026542	86034699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_86026622_86027737_86027868_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031700.12_3	chr8	+	3332	12	FSM	ENSMUSG00000031700.12	ENSMUST00000034136.12	3639	12	16	291	-15	-291	multi-exon	FALSE	canonical	0	0	junction_1	271.645643020279	1725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGGATGGCTGGTTATG	NA	False	NA	28	True	AATAAA	-29	NA	86219220	86253898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_86219319_86219533_86219799_86229893_86229984_86232207_86232317_86235807_86235939_86238741_86238986_86242786_86242867_86244605_86244743_86246076_86246252_86247967_86248124_86249884_86249998_86252164
ENSMUSG00000031700.12_85	chr8	+	1246	1	ISM	ENSMUSG00000031700.12	ENSMUST00000034136.12	3639	12	33735	4	6902	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTGAGCAGCTTGGTCA	NA	False	NA	9	True	AATAAA	-15	NA	86252939	86254185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_86252900_86254200
ENSMUSG00000031701.7_0	chr8	-	1911	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	9	999	9	-999	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATTCTGTGTCACATT	NA	False	NA	-7	True	AATAAA	-14	NA	86281964	86265260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
ENSMUSG00000031701.7_1	chr8	-	1571	7	ISM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	2048	999	170	-999	3prime_fragment	FALSE	canonical	3	694	junction_1	59.8843793395981	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATTCTGTGTCACATT	NA	False	NA	-7	True	AATAAA	-14	NA	86279925	86265260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815
ENSMUSG00000031701.7_7	chr8	-	384	1	ISM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	16329	999	14451	-999	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATTCTGTGTCACATT	NA	False	NA	-7	True	AATAAA	-14	NA	86265644	86265260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_86265300_86265600
ENSMUSG00000031703.9_0	chr8	-	2181	18	FSM	ENSMUSG00000031703.9	ENSMUST00000034140.9	3306	18	158	967	158	-967	multi-exon	FALSE	canonical	1	110	junction_3	53.6212528231601	433	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACCTGTGGCCAGGGC	NA	False	NA	-32	True	AATAAA	-9	NA	86567392	86445173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_86445557_86449259_86449378_86452142_86452226_86452794_86452920_86459001_86459081_86462753_86462798_86464745_86464855_86466856_86467008_86490863_86491037_86493586_86493682_86502768_86502851_86507144_86507207_86537173_86537269_86557811_86557887_86561649_86561708_86562974_86563121_86565556_86565630_86567162
ENSMUSG00000031706.8_0	chr8	+	4149	21	FSM	ENSMUSG00000031706.8	ENSMUST00000005600.6	4172	21	17	6	17	-6	multi-exon	FALSE	canonical	3	25	junction_6	9.14002188181188	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTGTCTACTGATGACG	NA	False	NA	15	True	AATAAA	-11	NA	84793481	84823615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84793678_84800359_84800699_84806491_84806602_84806753_84806838_84807743_84807852_84809276_84809391_84810710_84810804_84812201_84812297_84814334_84814702_84816739_84816922_84817578_84817699_84817994_84818108_84819163_84819283_84819408_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
ENSMUSG00000031706.8_1	chr8	+	3800	20	NIC	ENSMUSG00000031706.8	novel	4172	21	NA	NA	27	-6	combination_of_known_splicesites	FALSE	canonical	1	8	junction_1	11.873058960768	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTGTCTACTGATGACG	NA	False	NA	15	True	AATAAA	-11	NA	84793491	84823615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_84793678_84806491_84806602_84806753_84806838_84807743_84807852_84809276_84809391_84810710_84810804_84812201_84812297_84814334_84814702_84816739_84816922_84817578_84817699_84817994_84818108_84819163_84819283_84819408_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
ENSMUSG00000031706.8_15	chr8	+	3775	20	ISM	ENSMUSG00000031706.8	ENSMUST00000005600.6	4172	21	7071	8	7071	-8	3prime_fragment	FALSE	canonical	3	25	junction_5	9.21428494737452	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTTTGTCTACTGATGA	NA	False	NA	13	True	AATAAA	-9	NA	84800535	84823613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84800699_84806491_84806602_84806753_84806838_84807743_84807852_84809276_84809391_84810710_84810804_84812201_84812297_84814334_84814702_84816739_84816922_84817578_84817699_84817994_84818108_84819163_84819283_84819408_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
ENSMUSG00000031706.8_20	chr8	+	2777	13	ISM	ENSMUSG00000031706.8	ENSMUST00000005600.6	4172	21	21103	6	21103	-6	3prime_fragment	FALSE	canonical	3	35	junction_3	6.79256129077161	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTGTCTACTGATGACG	NA	False	NA	15	True	AATAAA	-11	NA	84814567	84823615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84814702_84816739_84816922_84817578_84817699_84817994_84818108_84819163_84819283_84819408_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
ENSMUSG00000031706.8_22	chr8	+	1982	7	ISM	ENSMUSG00000031706.8	ENSMUST00000005600.6	4172	21	26171	-10	26171	10	3prime_fragment	FALSE	canonical	3	41	junction_2	6.97614984548545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGAGAGCAGGGTTAGGTG	NA	False	NA	31	True	AATAAA	-27	NA	84819635	84823631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
ENSMUSG00000031706.8_24	chr8	+	2082	8	ISM	ENSMUSG00000031706.8	ENSMUST00000005600.6	4172	21	25971	6	25971	-6	3prime_fragment	FALSE	canonical	3	41	junction_3	6.60859057498307	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTGTCTACTGATGACG	NA	False	NA	15	True	AATAAA	-11	NA	84819435	84823615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
ENSMUSG00000031706.8_26	chr8	+	1684	5	ISM	ENSMUSG00000031706.8	ENSMUST00000005600.6	4172	21	27954	8	27954	-8	3prime_fragment	FALSE	canonical	3	44	junction_4	6.80073525436772	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTTTGTCTACTGATGA	NA	False	NA	13	True	AATAAA	-9	NA	84821418	84823613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
ENSMUSG00000031706.8_34	chr8	+	3151	15	ISM	ENSMUSG00000031706.8	ENSMUST00000005600.6	4172	21	17291	8	17291	-8	3prime_fragment	FALSE	canonical	3	35	junction_2	7.38172039015075	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTTTGTCTACTGATGA	7054	False	NA	13	True	AATAAA	-9	NA	84810755	84823613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84810804_84812201_84812297_84814334_84814702_84816739_84816922_84817578_84817699_84817994_84818108_84819163_84819283_84819408_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
ENSMUSG00000031708.18_0	chr8	-	1138	13	FSM	ENSMUSG00000031708.18	ENSMUST00000019382.17	1158	13	19	1	7	-1	multi-exon	FALSE	canonical	3	3555	junction_3	302.48290814891	1672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGACTGTGTGTTCTTT	NA	False	NA	-6	True	AATAAA	-12	NA	84321087	84298329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
ENSMUSG00000031708.18_4	chr8	-	1090	12	FSM	ENSMUSG00000031708.18	ENSMUST00000165740.9	1120	12	30	0	11	0	multi-exon	FALSE	canonical	3	487	junction_9	1051.54616581631	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321083	84298328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300499_84300552_84301106_84301158_84320968
ENSMUSG00000031709.16_0	chr8	+	5662	21	FSM	ENSMUSG00000031709.16	ENSMUST00000093393.5	5334	21	-326	-2	182	2	multi-exon	TRUE	canonical	2	4	junction_8	3.27528624703246	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGATGTCCTTGTACTTGAG	NA	False	NA	5	True	AATAAA	-17	NA	83892162	83999565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_83892834_83937049_83937161_83948066_83948186_83960108_83960338_83960740_83961003_83963140_83963349_83966459_83966667_83968166_83968338_83969150_83969302_83976030_83976246_83980086_83980205_83981255_83981542_83982423_83982554_83985623_83985723_83985932_83986002_83987547_83987789_83991475_83991542_83992709_83992797_83995611_83995687_83995772_83995877_83997522
ENSMUSG00000031709.16_10	chr8	+	1302	1	ISM	ENSMUSG00000031709.16	ENSMUST00000093393.5	5334	21	105773	0	12374	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGATGTCCTTGTACTTG	628	False	NA	3	True	AATAAA	-15	NA	83998261	83999563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_83998300_83999600
ENSMUSG00000031709.16_11	chr8	+	4445	17	ISM	ENSMUSG00000031709.16	ENSMUST00000093393.5	5334	21	68341	-4	-25058	4	3prime_fragment	FALSE	canonical	2	4	junction_4	3.3166247903554	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTTGTACTTGAGTT	5117	False	NA	7	True	AATAAA	-19	NA	83960829	83999567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_83961003_83963140_83963349_83966459_83966667_83968166_83968338_83969150_83969302_83976030_83976246_83980086_83980205_83981255_83981542_83982423_83982554_83985623_83985723_83985932_83986002_83987547_83987789_83991475_83991542_83992709_83992797_83995611_83995687_83995772_83995877_83997522
ENSMUSG00000031709.16_12	chr8	+	2771	8	ISM	ENSMUSG00000031709.16	ENSMUST00000093393.5	5334	21	93146	0	-253	0	3prime_fragment	FALSE	canonical	3	13	junction_6	1.98976975388345	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGATGTCCTTGTACTTG	2835	False	NA	3	True	AATAAA	-15	NA	83985634	83999563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_83985723_83985932_83986002_83987547_83987789_83991475_83991542_83992709_83992797_83995611_83995687_83995772_83995877_83997522
ENSMUSG00000031709.16_3	chr8	+	4581	18	ISM	ENSMUSG00000031709.16	ENSMUST00000093393.5	5334	21	67791	7	-25608	-7	3prime_fragment	FALSE	canonical	2	4	junction_5	3.25182940260829	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATATGGCTCGATGTCCTT	4567	False	NA	-4	True	AATAAA	-8	NA	83960279	83999556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_83960338_83960740_83961003_83963140_83963349_83966459_83966667_83968166_83968338_83969150_83969302_83976030_83976246_83980086_83980205_83981255_83981542_83982423_83982554_83985623_83985723_83985932_83986002_83987547_83987789_83991475_83991542_83992709_83992797_83995611_83995687_83995772_83995877_83997522
ENSMUSG00000031711.8_1	chr8	-	1650	10	FSM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	25	0	10	0	multi-exon	FALSE	canonical	3	422	junction_3	43.069567612422	436	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500764	83490249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
ENSMUSG00000031714.10_0	chr8	-	3950	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21254	-3	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_6	37.5443770345651	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGTGAGCTGTGTT	NA	False	NA	-12	True	AATAAA	-12	NA	81585871	81491071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
ENSMUSG00000031714.10_2	chr8	-	4043	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	21254	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	171.228765106801	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGAGCTGTGTTACT	NA	False	NA	-9	True	AATAAA	-15	NA	81585871	81491068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81502789_81502880_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
ENSMUSG00000031714.10_3	chr8	-	1688	1	ISM	ENSMUSG00000031714.10	ENSMUST00000210676.2	4985	11	114392	2	64757	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGAGCTGTGTTACT	NA	False	NA	-9	True	AATAAA	-15	NA	81492756	81491068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_81491100_81492800
ENSMUSG00000031714.10_4	chr8	-	4735	10	FSM	ENSMUSG00000031714.10	ENSMUST00000034150.10	4870	10	134	1	134	-1	multi-exon	FALSE	canonical	3	25	junction_9	135.607913385759	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGTGAGCTGTGTTAC	NA	False	NA	-10	True	AATAAA	-14	NA	81606991	81491069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81606160
ENSMUSG00000031715.15_2	chr8	-	3593	24	FSM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	186	2334	114	-2334	multi-exon	FALSE	canonical	3	1231	junction_15	129.150386396008	3405	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTCATTTGATT	NA	False	NA	-23	True	AATAAA	-17	NA	81465940	81427469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_81427758_81428756_81428865_81431233_81431447_81431847_81431967_81432075_81432209_81435311_81435435_81435741_81435856_81436284_81436396_81437185_81437306_81438285_81438435_81440562_81440696_81443077_81443231_81444150_81444273_81446206_81446434_81447316_81447427_81450797_81450867_81452618_81452751_81452839_81452996_81454244_81454425_81455101_81455203_81456723_81456825_81460318_81460486_81463317_81463393_81465551
ENSMUSG00000031723.9_0	chr8	+	1826	4	FSM	ENSMUSG00000031723.9	ENSMUST00000034159.8	1890	4	53	11	53	-11	multi-exon	FALSE	canonical	3	27	junction_1	19.3045763140937	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCACTGTCAGCAGGGTT	NA	False	NA	4	True	AATAAA	-43	NA	110292576	110300672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_110292696_110295521_110295730_110298002_110298155_110299325
ENSMUSG00000031728.11_11	chr8	+	1927	8	NIC	ENSMUSG00000031728.11	novel	2127	9	NA	NA	7	-6	combination_of_known_junctions	FALSE	canonical	2	14	junction_4	6.75821495572278	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCCCCTGGCTCCCTTG	NA	False	NA	2	True	AATAAA	-15	NA	110432258	110451558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_110432496_110432988_110433052_110436042_110436160_110444393_110444520_110447826_110447976_110448385_110448491_110449518_110449686_110450595
ENSMUSG00000031728.11_18	chr8	+	1814	8	FSM	ENSMUSG00000031728.11	ENSMUST00000212000.2	2081	8	267	0	267	0	multi-exon	FALSE	canonical	2	14	junction_4	6.43015853424394	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCCTTGTCTCAT	NA	False	NA	8	True	AATAAA	-21	NA	110432986	110451564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_110433052_110434660_110434777_110436042_110436160_110444393_110444520_110447826_110447976_110448385_110448491_110449518_110449686_110450595
ENSMUSG00000031728.11_3	chr8	+	2083	9	NIC	ENSMUSG00000031728.11	novel	2127	9	NA	NA	-10	-2	combination_of_known_junctions	FALSE	canonical	2	20	junction_2	4.9180788932265	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCTGGCTCCCTTGTCTC	NA	False	NA	6	True	AATAAA	-19	NA	110432241	110451562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_110432496_110432988_110433052_110434660_110434777_110436042_110436160_110444393_110444539_110447826_110447976_110448385_110448491_110449518_110449686_110450595
ENSMUSG00000031728.11_4	chr8	+	2077	9	FSM	ENSMUSG00000031728.11	ENSMUST00000034163.9	2127	9	48	2	-23	-2	multi-exon	FALSE	canonical	2	14	junction_5	6.08147802758507	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCTGGCTCCCTTGTCTC	NA	False	NA	6	True	AATAAA	-19	NA	110432228	110451562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_110432496_110432988_110433052_110434660_110434777_110436042_110436160_110444393_110444520_110447826_110447976_110448385_110448491_110449518_110449686_110450595
ENSMUSG00000031728.11_6	chr8	+	1971	8	FSM	ENSMUSG00000031728.11	ENSMUST00000212964.2	2033	8	59	3	-15	-3	multi-exon	FALSE	canonical	2	17	junction_2	5.70356136505061	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCCTGGCTCCCTTGTCT	NA	False	NA	5	True	AATAAA	-18	NA	110432236	110451561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_110432496_110432988_110433052_110436042_110436160_110444393_110444539_110447826_110447976_110448385_110448491_110449518_110449686_110450595
ENSMUSG00000031729.7_0	chr8	-	2301	10	FSM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	1	2	1	1	multi-exon	FALSE	canonical	3	462	junction_2	71.0226880807973	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAGTGTTGGTCAAATG	NA	False	NA	-15	True	AATAAA	-18	NA	110419891	110397958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
ENSMUSG00000031729.7_1	chr8	-	3634	9	FSM	ENSMUSG00000031729.7	ENSMUST00000212973.2	3633	9	1	-2	1	1	multi-exon	FALSE	canonical	3	528	junction_2	54.85990680816	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAGTGTTGGTCAAATG	NA	False	NA	-15	True	AATAAA	-18	NA	110419891	110397958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_110399274_110402007_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
ENSMUSG00000031729.7_5	chr8	-	2261	9	NIC	ENSMUSG00000031729.7	novel	2304	10	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	212.348144270205	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTAGTGTTGGTCAAAT	NA	False	NA	-16	True	AATAAA	-17	NA	110419901	110397959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_110399274_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
ENSMUSG00000031729.7_7	chr8	-	4273	8	NIC	ENSMUSG00000031729.7	novel	3633	9	NA	NA	-3	1	intron_retention	FALSE	canonical	3	544	junction_2	46.3676523416214	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAGTGTTGGTCAAATG	NA	False	NA	-15	True	AATAAA	-18	NA	110419895	110397958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_110399274_110402007_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
ENSMUSG00000031730.19_0	chr8	-	1797	9	FSM	ENSMUSG00000031730.19	ENSMUST00000123605.9	2039	9	233	9	-24	-9	multi-exon	FALSE	canonical	1	150	junction_2	108.396191699709	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGAACAATGCTAGAATAT	NA	False	NA	NA	False	AATAAA	-10	NA	110335022	110320117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
ENSMUSG00000031730.19_16	chr8	-	1930	8	NIC	ENSMUSG00000031730.19	novel	2039	9	NA	NA	-17	-5	intron_retention	FALSE	canonical	3	350	junction_7	44.9107959385796	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAATGCTAGAATATATTG	NA	False	NA	NA	False	AATAAA	-14	NA	110335015	110320113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_110320764_110321251_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
ENSMUSG00000031730.19_30	chr8	-	2505	7	NIC	ENSMUSG00000031730.19	novel	2039	9	NA	NA	-17	-7	intron_retention	FALSE	canonical	3	350	junction_6	48.3517206404166	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACAATGCTAGAATATAT	NA	False	NA	NA	False	AATAAA	-12	NA	110335015	110320115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_110320764_110321251_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
ENSMUSG00000031730.19_5	chr8	-	1896	9	NIC	ENSMUSG00000031730.19	novel	2039	9	NA	NA	-2	-7	combination_of_known_junctions	FALSE	canonical	1	23	junction_8	169.433615318803	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACAATGCTAGAATATAT	NA	False	NA	NA	False	AATAAA	-12	NA	110335307	110320115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110335171
ENSMUSG00000031731.17_0	chr8	+	3933	22	NIC	ENSMUSG00000031731.17	novel	3692	23	NA	NA	87	180	intron_retention	FALSE	canonical	1	4	junction_1	45.8165522773706	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAGAGTGCCGAGTGTTT	NA	False	NA	6	True	ATTAAA	-19	NA	110505272	110588170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_110505595_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556308_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
ENSMUSG00000031731.17_1	chr8	+	4111	23	FSM	ENSMUSG00000031731.17	ENSMUST00000034171.9	3692	23	-243	-176	109	176	multi-exon	FALSE	canonical	3	143	junction_1	23.6531408988355	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTAAGAGTGCCGAGT	NA	False	NA	2	True	ATTAAA	-15	NA	110505294	110588166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556308_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
ENSMUSG00000031731.17_38	chr8	+	2273	1	FSM	ENSMUSG00000031731.17	ENSMUST00000179104.2	1096	1	-1177	0	-1177	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAAACTTTGCTGCCTTG	NA	False	NA	15	True	AATAAA	-17	NA	110588562	110590835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_110588600_110590800
ENSMUSG00000031732.13_0	chr8	+	1940	1	ISM	ENSMUSG00000031732.13	ENSMUST00000179721.8	7846	19	74117	11	74109	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCTTTTCCATGCCTGTG	NA	False	NA	NA	False	NA	NA	NA	110669351	110671291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_110669400_110671300
ENSMUSG00000031734.14_0	chr8	-	2334	4	FSM	ENSMUSG00000031734.14	ENSMUST00000175795.4	2748	4	412	2	260	-2	multi-exon	FALSE	canonical	2	5	junction_1	2.82842712474619	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCGGCAGGTCTGCCACAT	NA	False	NA	NA	False	AATAAA	-25	NA	92528283	92525154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_92525605_92526038_92526106_92526300_92527427_92527592
ENSMUSG00000031736.12_2	chr8	-	5106	5	NIC	ENSMUSG00000031736.12	novel	1238	7	NA	NA	24	0	intron_retention	FALSE	canonical	3	9	junction_4	2.54950975679639	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTACATGTTTGTTTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	93082724	93052665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_93053091_93071480_93071668_93072977_93073092_93073411_93077383_93082315
ENSMUSG00000031736.12_6	chr8	-	1118	6	NIC	ENSMUSG00000031736.12	novel	1238	7	NA	NA	-7	-1	intron_retention	FALSE	canonical	0	0	junction_4	5.31413210223457	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTTGTTTGTGTAATG	NA	False	NA	NA	False	AATAAA	-20	NA	93082504	93052661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_93053091_93071480_93071668_93072977_93073092_93073411_93073547_93077318_93077383_93082315
ENSMUSG00000031736.12_8	chr8	-	2343	6	FSM	ENSMUSG00000031736.12	ENSMUST00000180102.8	732	6	-107	-1504	-2	1504	multi-exon	FALSE	canonical	1	2	junction_1	4.12795348811006	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGGATTGGACTTCACC	NA	False	NA	NA	False	AATAAA	-8	NA	93082499	93061334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_93063000_93071480_93071668_93072977_93073092_93073411_93073541_93077318_93077383_93082315
ENSMUSG00000031737.12_1	chr8	+	2455	3	FSM	ENSMUSG00000031737.12	ENSMUST00000034184.12	2450	3	-12	7	-12	-7	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAACTAGAGCCACTCA	NA	False	NA	NA	False	ATTAAA	-10	NA	93084364	93088077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_93085058_93086164_93086571_93086721
ENSMUSG00000031740.9_0	chr8	+	3007	13	FSM	ENSMUSG00000031740.9	ENSMUST00000034187.9	3078	13	68	3	68	-2	multi-exon	FALSE	canonical	3	12	junction_9	5.63964143856288	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTGGCTCTGTTTT	NA	False	NA	1	True	AATAAA	-16	NA	93553986	93580045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_93554406_93557248_93557476_93558312_93558462_93559391_93559521_93559696_93559871_93562596_93562771_93563533_93563708_93565880_93566037_93567017_93567160_93570447_93570585_93572708_93572869_93576753_93576864_93579189
ENSMUSG00000031740.9_2	chr8	+	2596	14	NIC	ENSMUSG00000031740.9	novel	3078	13	NA	NA	18	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_13	7.63129650783748	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTGGCTCTGTTTT	NA	False	NA	1	True	AATAAA	-16	NA	93553936	93580045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_93554406_93557248_93557476_93558312_93558462_93559391_93559521_93559696_93559871_93562596_93562771_93563533_93563708_93565880_93566037_93567017_93567160_93570447_93570585_93572708_93572869_93576753_93576864_93579189_93579342_93579802
ENSMUSG00000031748.17_0	chr8	+	2968	9	FSM	ENSMUSG00000031748.17	ENSMUST00000034198.15	2948	9	-346	326	-144	106	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCAGTCCCATGTCATT	4011	False	NA	NA	False	ATTAAA	-38	NA	94537119	94695690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_94538082_94538278_94538322_94622858_94623001_94670825_94670987_94676031_94676161_94676929_94677060_94690011_94690166_94693495_94693712_94694659
ENSMUSG00000031749.13_0	chr8	+	3769	7	FSM	ENSMUSG00000031749.13	ENSMUST00000034197.5	4396	7	10	617	10	-617	multi-exon	FALSE	canonical	3	80	junction_2	8.28653526310404	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCCATAGAGTCACTCA	3047	False	NA	NA	False	ATTAAA	-7	NA	111646563	111698495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_111646738_111683389_111684683_111688800_111688995_111694048_111694229_111695819_111695866_111696175_111696296_111696733
ENSMUSG00000031749.13_10	chr8	+	2309	5	ISM	ENSMUSG00000031749.13	ENSMUST00000034197.5	4396	7	42247	610	21265	-610	3prime_fragment	FALSE	canonical	3	87	junction_1	5.93190525885234	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAGTCACTCATCTGTTC	140	False	NA	NA	False	ATTAAA	-14	NA	111688800	111698502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111688995_111694048_111694229_111695819_111695866_111696175_111696296_111696733
ENSMUSG00000031749.13_9	chr8	+	3285	6	ISM	ENSMUSG00000031749.13	ENSMUST00000034197.5	4396	7	37151	612	16169	-612	3prime_fragment	FALSE	canonical	3	80	junction_1	7.93473376995095	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATAGAGTCACTCATCTGT	NA	False	NA	NA	False	ATTAAA	-12	NA	111683704	111698500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111684683_111688800_111688995_111694048_111694229_111695819_111695866_111696175_111696296_111696733
ENSMUSG00000031750.16_16	chr8	-	1683	7	FSM	ENSMUSG00000031750.16	ENSMUST00000076846.11	1709	7	26	0	-5	0	multi-exon	FALSE	canonical	0	0	junction_6	15.61694236683	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTGCATCTCTGATG	5056	False	NA	-23	True	ATTAAA	-16	NA	111532509	111468471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111532365
ENSMUSG00000031750.16_3	chr8	-	1713	7	NNC	ENSMUSG00000031750.16	novel	1709	7	NA	NA	-13237	-1	at_least_one_novel_splicesite	TRUE	canonical	3	22	junction_6	7.54247233265651	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTGATGGTGAACCTGG	NA	False	NA	-13	True	ATTAAA	-26	NA	111482567	111468461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111482403
ENSMUSG00000031750.16_8	chr8	-	1476	6	ISM	ENSMUSG00000031750.16	ENSMUST00000076846.11	1709	7	50316	0	-12889	0	3prime_fragment	FALSE	canonical	3	39	junction_4	2.0591260281974	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTGCATCTCTGATG	NA	False	NA	-23	True	ATTAAA	-16	NA	111482219	111468471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862
ENSMUSG00000031751.15_0	chr8	-	3328	14	FSM	ENSMUSG00000031751.15	ENSMUST00000053766.14	3880	14	222	330	222	-330	multi-exon	TRUE	canonical	3	217	junction_1	15.7862947074897	593	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGCTGTTAGTTAAATTC	NA	False	NA	-38	True	AATAAA	-22	NA	94739248	94698545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_94699943_94700686_94700872_94701363_94701448_94702661_94702797_94706945_94707050_94709939_94710131_94711461_94711573_94711966_94712101_94714001_94714135_94714346_94714388_94725725_94725879_94726932_94727098_94731760_94731854_94738846
ENSMUSG00000031753.17_2	chr8	+	2728	19	FSM	ENSMUSG00000031753.17	ENSMUST00000034203.17	2737	19	4	5	-1	1	multi-exon	TRUE	canonical	3	332	junction_8	32.668367302671	710	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATGCCATTGTGTTGGG	9632	False	NA	8	True	AATAAA	-13	NA	111573669	111608854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
ENSMUSG00000031754.11_0	chr8	-	1080	7	FSM	ENSMUSG00000031754.11	ENSMUST00000034204.11	5010	7	18	3912	-7	-3	multi-exon	FALSE	canonical	3	2190	junction_4	118.898649651242	1095	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGCCGAGGATCCTTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	94763641	94746035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
ENSMUSG00000031755.7_0	chr8	-	1631	10	ISM	ENSMUSG00000031755.7	ENSMUST00000034206.6	3064	17	16492	-2	-2680	2	3prime_fragment	FALSE	canonical	3	19	junction_6	4.84831649539365	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTTGTTTATAAATTAC	NA	False	NA	-1	True	AATAAA	-17	NA	94809064	94794579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_94795011_94796589_94796739_94800919_94801033_94801750_94801889_94803579_94803712_94806110_94806241_94807395_94807568_94807652_94807798_94808625_94808766_94808983
ENSMUSG00000031755.7_1	chr8	-	2629	17	FSM	ENSMUSG00000031755.7	ENSMUST00000034206.6	3064	17	432	3	432	-3	multi-exon	FALSE	canonical	1	2	junction_15	7.54569413639329	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTGTTGTTGTTTATAA	NA	False	NA	-6	True	AATAAA	-12	NA	94825124	94794584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_94795011_94796589_94796739_94800919_94801033_94801750_94801889_94803579_94803712_94806110_94806241_94807395_94807568_94807652_94807798_94808625_94808766_94808983_94809120_94813283_94813371_94813458_94813564_94814004_94814083_94815730_94815794_94816389_94816516_94819022_94819251_94824863
ENSMUSG00000031755.7_4	chr8	-	2381	16	NIC	ENSMUSG00000031755.7	novel	3064	17	NA	NA	452	-3	combination_of_known_splicesites	FALSE	canonical	1	3	junction_15	7.55836549056004	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTGTTGTTGTTTATAA	NA	False	NA	-6	True	AATAAA	-12	NA	94825104	94794584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_94795011_94796589_94796739_94800919_94801033_94801750_94801889_94803579_94803712_94806110_94806241_94807395_94807568_94807652_94807798_94808625_94808766_94808983_94809120_94813283_94813371_94813458_94813564_94814004_94814083_94815730_94815794_94816389_94816516_94824863
ENSMUSG00000031756.6_0	chr8	+	1773	12	FSM	ENSMUSG00000031756.6	ENSMUST00000034205.5	1768	12	-11	6	-1	-6	multi-exon	FALSE	canonical	3	221	junction_1	41.3065540194129	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGCATTATCAGTTCCTT	NA	False	NA	2	True	AATAAA	-10	NA	117648467	117668236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
ENSMUSG00000031756.6_28	chr8	+	1719	11	ISM	ENSMUSG00000031756.6	ENSMUST00000034205.5	1768	12	587	6	0	-6	3prime_fragment	FALSE	canonical	3	258	junction_2	38.2446074630137	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGCATTATCAGTTCCTT	NA	False	NA	2	True	AATAAA	-10	NA	117649065	117668236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
ENSMUSG00000031756.6_6	chr8	+	2689	11	NIC	ENSMUSG00000031756.6	novel	1768	12	NA	NA	-7	-6	intron_retention	FALSE	canonical	3	221	junction_1	43.3192797724062	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGCATTATCAGTTCCTT	NA	False	NA	2	True	AATAAA	-10	NA	117648461	117668236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117664014_117667182_117667310_117667573
ENSMUSG00000031758.11_0	chr8	-	2265	7	FSM	ENSMUSG00000031758.11	ENSMUST00000109102.4	2411	7	112	34	112	-34	multi-exon	FALSE	canonical	3	57	junction_6	26.9670580935745	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAGAAAAAAAA	1881	False	NA	31	True	NA	NA	NA	117459618	117301172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117459536
ENSMUSG00000031758.11_1	chr8	-	2193	7	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59816	-79	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_6	23.3571307218065	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAATTCTGATAATTTATG	NA	False	NA	-14	True	AATATA	-24	NA	117399914	117301217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117399859
ENSMUSG00000031758.11_5	chr8	-	7705	6	ISM	ENSMUSG00000031758.11	ENSMUST00000109102.4	2411	7	108806	-5669	108806	5669	3prime_fragment	FALSE	canonical	3	115	junction_3	6.82934843158555	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTTGTCTCCGTTTGTT	NA	False	NA	-10	True	AATAAA	-8	NA	117350924	117295469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522
ENSMUSG00000031760.10_0	chr8	+	393	3	FSM	ENSMUSG00000031760.10	ENSMUST00000034211.10	536	3	140	3	1	-3	multi-exon	FALSE	canonical	3	14	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACCCAAGACTGGTCTC	NA	False	NA	4	True	AATAAA	-14	NA	94879374	94880771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_94879459_94879652_94879719_94880528
ENSMUSG00000031762.8_0	chr8	+	382	3	FSM	ENSMUSG00000031762.8	ENSMUST00000034214.8	511	3	120	9	-76	-5	multi-exon	FALSE	canonical	3	13494	junction_2	132	1963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATTCAGCTTGTCTCTG	NA	False	NA	28	True	AATAAA	-14	NA	94899411	94900187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_94899504_94899754_94899821_94899963
ENSMUSG00000031762.8_1	chr8	+	130	1	ISM	ENSMUSG00000031762.8	ENSMUST00000034214.8	511	3	767	8	571	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTCAGCTTGTCTCTGT	NA	False	NA	29	True	AATAAA	-15	NA	94900058	94900188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_94900100_94900200
ENSMUSG00000031765.9_0	chr8	+	390	3	FSM	ENSMUSG00000031765.9	ENSMUST00000034215.8	549	3	157	2	-2	0	multi-exon	FALSE	canonical	3	14682	junction_2	74.5	2584	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGTTTTCTTGGTGT	NA	False	NA	27	True	AATAAA	-16	NA	94905866	94906953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_94905967_94906450_94906517_94906729
ENSMUSG00000031767.14_0	chr8	+	1041	4	FSM	ENSMUSG00000031767.14	ENSMUST00000073521.12	3543	4	63	2439	2	-2	multi-exon	FALSE	canonical	2	2	junction_3	2.05480466765633	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATATGGCTTGCAATAT	NA	False	NA	NA	False	NA	NA	NA	114860359	114879040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_114860441_114863077_114863232_114874634_114874794_114878393
ENSMUSG00000031770.17_0	chr8	+	1875	8	FSM	ENSMUSG00000031770.17	ENSMUST00000161576.8	1952	8	58	19	1	0	multi-exon	FALSE	canonical	3	396	junction_6	55.7864002152818	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAGACTCCCATTGTCC	NA	False	NA	28	True	AATAAA	-21	NA	95113123	95121986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95113367_95115983_95116062_95116148_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
ENSMUSG00000031770.17_2	chr8	+	1872	8	FSM	ENSMUSG00000031770.17	ENSMUST00000034220.8	1873	8	1	0	1	0	multi-exon	FALSE	canonical	3	44	junction_2	160.784175279808	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAGACTCCCATTGTCC	NA	False	NA	28	True	AATAAA	-21	NA	95113123	95121986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95113367_95115983_95116062_95116151_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
ENSMUSG00000031774.9_1	chr8	-	1759	8	FSM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	308	806	1	713	multi-exon	FALSE	canonical	0	0	junction_3	171.915855070118	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACGTTAGAGAAGCAAAC	3898	False	NA	-8	True	AATAAA	-19	NA	95328317	95301571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
ENSMUSG00000031774.9_2	chr8	-	1705	9	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	-5	714	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	197.424036023986	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACGTTAGAGAAGCAAACT	3856	False	NA	-7	True	AATAAA	-20	NA	95328359	95301570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124_95328213_95328309
ENSMUSG00000031774.9_8	chr8	-	1658	7	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	5	713	intron_retention	FALSE	canonical	0	0	junction_3	218.907451271587	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACGTTAGAGAAGCAAAC	3902	False	NA	-8	True	AATAAA	-19	NA	95328313	95301571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95328124
ENSMUSG00000031775.6_0	chr8	-	1324	4	FSM	ENSMUSG00000031775.6	ENSMUST00000034227.6	1926	4	50	552	50	265	multi-exon	FALSE	canonical	2	4	junction_3	2.16024689946929	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGGGGTTATCATTCCT	467	False	NA	-2	True	AATAAA	-18	NA	95422856	95402073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_95402908_95403853_95403977_95405972_95406147_95422663
ENSMUSG00000031776.18_1	chr8	+	1986	6	FSM	ENSMUSG00000031776.18	ENSMUST00000034228.16	2063	6	69	8	-54	-8	multi-exon	FALSE	canonical	3	229	junction_5	11.4612390255155	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATAATCACTTGATGTG	NA	False	NA	4	True	AGTAAA	-17	NA	95393296	95401045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95393530_95394224_95394287_95396948_95397056_95397922_95398009_95398689_95398787_95399644
ENSMUSG00000031776.18_6	chr8	+	1897	5	NIC	ENSMUSG00000031776.18	novel	2063	6	NA	NA	-51	-8	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	103.791859025648	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATAATCACTTGATGTG	NA	False	NA	4	True	AGTAAA	-17	NA	95393299	95401045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_95393530_95394224_95394287_95396948_95397056_95398689_95398787_95399644
ENSMUSG00000031778.14_0	chr8	+	3112	3	FSM	ENSMUSG00000031778.14	ENSMUST00000034230.7	3315	3	196	7	1	-7	multi-exon	FALSE	canonical	2	8	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAATCAGGGAACTTTT	2375	False	NA	NA	False	AATAAA	-17	NA	95498832	95509048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95498963_95504655_95504777_95506187
ENSMUSG00000031778.14_1	chr8	+	2605	1	ISM	ENSMUSG00000031778.14	ENSMUST00000034230.7	3315	3	7807	7	7591	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAATCAGGGAACTTTT	9986	False	NA	NA	False	AATAAA	-17	NA	95506443	95509048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_95506400_95509000
ENSMUSG00000031781.15_0	chr8	-	1530	9	FSM	ENSMUSG00000031781.15	ENSMUST00000162538.9	4359	9	72	2757	-21	0	multi-exon	FALSE	canonical	3	1341	junction_8	171.134997881789	1166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95564914	95549188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
ENSMUSG00000031781.15_1	chr8	-	1497	8	ISM	ENSMUSG00000031781.15	ENSMUST00000034233.15	1807	9	5563	0	-7	0	3prime_fragment	FALSE	canonical	3	1537	junction_1	133.441265838463	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95559330	95549188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142
ENSMUSG00000031781.15_4	chr8	-	1805	9	FSM	ENSMUSG00000031781.15	ENSMUST00000034233.15	1807	9	2	0	-2	0	multi-exon	FALSE	canonical	3	211	junction_8	506.411394026635	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95564891	95549188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564581
ENSMUSG00000031782.16_0	chr8	+	1694	9	FSM	ENSMUSG00000031782.16	ENSMUST00000034234.15	1789	9	89	6	5	-6	multi-exon	FALSE	canonical	3	145	junction_5	12.7322179921646	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAATTTCTTGTTGTTTT	NA	False	NA	3	True	AATAAA	-9	NA	95565037	95581517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95578478_95578584_95579742_95579899_95580232_95580287_95580741
ENSMUSG00000031783.11_3	chr8	+	1175	9	FSM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	72	333	4	168	multi-exon	FALSE	canonical	3	1933	junction_5	86.4056566435323	1183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCATGCGTCATCGTGC	NA	False	NA	25	True	AATAAA	-16	NA	95584149	95590537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
ENSMUSG00000031785.17_1	chr8	+	3394	14	FSM	ENSMUSG00000031785.17	ENSMUST00000179619.9	3616	14	198	24	196	-3	multi-exon	FALSE	canonical	3	57	junction_6	9.58857801774418	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTGGAGAGTTGCCCG	877	False	NA	22	True	AATAAA	-35	NA	95703932	95740821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95704046_95729066_95729142_95729878_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
ENSMUSG00000031785.17_12	chr8	+	2770	9	ISM	ENSMUSG00000031785.17	ENSMUST00000093271.8	3574	14	21558	9	-218	-6	3prime_fragment	FALSE	canonical	3	57	junction_1	4.89897948556636	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGTTTGGAGAGTTGC	NA	False	NA	19	True	AATAAA	-32	NA	95732556	95740818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
ENSMUSG00000031785.17_4	chr8	+	3544	14	NIC	ENSMUSG00000031785.17	novel	3616	14	NA	NA	41	-23	intron_retention	FALSE	canonical	2	5	junction_2	18.2244390178352	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGCCATGGCAAAGCAGC	722	False	NA	2	True	AATAAA	-15	NA	95703777	95740801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_95704046_95729066_95729142_95729863_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
ENSMUSG00000031785.17_7	chr8	+	3528	14	FSM	ENSMUSG00000031785.17	ENSMUST00000093271.8	3574	14	46	0	46	0	multi-exon	FALSE	canonical	1	2	junction_1	19.2826991162311	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAGTTGCCCGTCTCAG	7989	False	NA	28	True	AATAAA	-41	NA	95711044	95740827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95711286_95729066_95729142_95729878_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
ENSMUSG00000031785.17_8	chr8	+	3262	13	ISM	ENSMUSG00000031785.17	ENSMUST00000093271.8	3574	14	18068	25	1558	-22	3prime_fragment	FALSE	canonical	3	57	junction_5	8.28108621431325	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCCATGGCAAAGCAGCA	NA	False	NA	3	True	AATAAA	-16	NA	95729066	95740802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_95729142_95729878_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
ENSMUSG00000031787.9_21	chr8	+	2505	19	ISM	ENSMUSG00000031787.9	ENSMUST00000034239.9	3777	20	1410	1155	0	-1155	3prime_fragment	FALSE	canonical	3	130	junction_5	15.373939790807	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTTCCTTATGAGAGGAA	2219	False	NA	11	True	ATTAAA	-15	NA	95809223	95825684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_95809522_95813915_95814047_95816587_95816706_95820143_95820245_95820541_95820584_95821107_95821192_95821347_95821464_95821800_95821873_95821979_95822131_95822233_95822425_95822516_95822648_95822983_95823035_95823839_95823917_95824026_95824147_95824242_95824393_95824582_95824660_95824733_95824809_95824946_95825064_95825281
ENSMUSG00000031787.9_3	chr8	+	2539	20	FSM	ENSMUSG00000031787.9	ENSMUST00000034239.9	3777	20	85	1153	85	-1153	multi-exon	FALSE	canonical	3	123	junction_1	16.4357221924964	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTCCTTATGAGAGGAATA	894	False	NA	13	True	ATTAAA	-17	NA	95807898	95825686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95807933_95809225_95809522_95813915_95814047_95816587_95816706_95820143_95820245_95820541_95820584_95821107_95821192_95821347_95821464_95821800_95821873_95821979_95822131_95822233_95822425_95822516_95822648_95822983_95823035_95823839_95823917_95824026_95824147_95824242_95824393_95824582_95824660_95824733_95824809_95824946_95825064_95825281
ENSMUSG00000031788.15_1	chr8	-	3272	20	FSM	ENSMUSG00000031788.15	ENSMUST00000034240.15	3277	20	-1	6	-1	0	multi-exon	FALSE	canonical	3	25	junction_2	24.0325264354334	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGTGCAATCTGAATC	NA	False	NA	-10	True	ATTAAA	-15	NA	95869176	95826461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_95827081_95827274_95827302_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95861344_95861488_95864542_95864748_95869059
ENSMUSG00000031788.15_11	chr8	-	3243	19	NIC	ENSMUSG00000031788.15	novel	3277	20	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_16	17.8975134489214	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGTGCAATCTGAATC	NA	False	NA	-10	True	ATTAAA	-15	NA	95869174	95826461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_95827081_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95861344_95861488_95864542_95864748_95869059
ENSMUSG00000031788.15_4	chr8	-	3592	22	NIC	ENSMUSG00000031788.15	novel	3384	22	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	25	junction_2	22.097495779565	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGTGCAATCTGAATC	NA	False	NA	-10	True	ATTAAA	-15	NA	95869175	95826461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_95827081_95827274_95827302_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95853153_95853336_95855823_95855963_95861344_95861488_95864542_95864748_95869059
ENSMUSG00000031788.15_5	chr8	-	3564	21	NIC	ENSMUSG00000031788.15	novel	3384	22	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	48	junction_17	16.2668374307977	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGTGCAATCTGAATC	NA	False	NA	-10	True	ATTAAA	-15	NA	95869174	95826461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_95827081_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95853153_95853336_95855823_95855963_95861344_95861488_95864542_95864748_95869059
ENSMUSG00000031790.9_0	chr8	+	4344	10	FSM	ENSMUSG00000031790.9	ENSMUST00000034243.7	5135	10	4	787	4	-787	multi-exon	FALSE	canonical	3	26	junction_5	7.43531778858738	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGTCTACAGGGGCAG	NA	False	NA	8	True	AATAAA	-17	NA	96078899	96100921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_96079647_96091941_96092091_96092921_96093051_96094555_96094864_96095186_96095349_96096108_96096363_96096760_96096900_96097323_96097475_96097633_96097750_96098732
ENSMUSG00000031790.9_4	chr8	+	3438	8	ISM	ENSMUSG00000031790.9	ENSMUST00000034243.7	5135	10	14036	787	-3567	-787	3prime_fragment	FALSE	canonical	3	26	junction_3	8.20900451346208	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGTCTACAGGGGCAG	NA	False	NA	8	True	AATAAA	-17	NA	96092931	96100921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_96093051_96094555_96094864_96095186_96095349_96096108_96096363_96096760_96096900_96097323_96097475_96097633_96097750_96098732
ENSMUSG00000031790.9_5	chr8	+	1631	6	ISM	ENSMUSG00000031790.9	ENSMUST00000034243.7	5135	10	16355	2103	-1248	-2103	3prime_fragment	FALSE	canonical	3	26	junction_1	8.04984471899924	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTTGAGACTTGGTTC	NA	False	NA	NA	False	NA	NA	NA	96095250	96099605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_96095349_96096108_96096363_96096760_96096900_96097323_96097475_96097633_96097750_96098732
ENSMUSG00000031790.9_6	chr8	+	2599	4	ISM	ENSMUSG00000031790.9	ENSMUST00000034243.7	5135	10	17860	788	257	-788	3prime_fragment	FALSE	canonical	3	35	junction_1	4.24264068711928	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTTGTCTACAGGGGCA	NA	False	NA	7	True	AATAAA	-16	NA	96096755	96100920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_96096900_96097323_96097475_96097633_96097750_96098732
ENSMUSG00000031790.9_7	chr8	+	1405	1	ISM	ENSMUSG00000031790.9	ENSMUST00000034243.7	5135	10	20621	787	3018	-787	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGTCTACAGGGGCAG	NA	False	NA	8	True	AATAAA	-17	NA	96099516	96100921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_96099500_96100900
ENSMUSG00000031791.9_1	chr8	+	2143	6	FSM	ENSMUSG00000031791.9	ENSMUST00000034244.9	2124	6	-27	8	-9	-8	multi-exon	FALSE	canonical	3	40	junction_3	8.51821577561874	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAATCAAGCTCTTTTTC	NA	False	NA	NA	False	AATAAA	-10	NA	73325889	73341118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_73326072_73333406_73333564_73333803_73333989_73335028_73335117_73338543_73338662_73339705
ENSMUSG00000031791.9_3	chr8	+	1933	5	FSM	ENSMUSG00000031791.9	ENSMUST00000211914.2	820	5	-20	-1093	-2	-8	multi-exon	FALSE	canonical	3	7	junction_2	20.2484567313166	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAATCAAGCTCTTTTTC	NA	False	NA	NA	False	AATAAA	-10	NA	73325914	73341118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_73326072_73333406_73333564_73335028_73335117_73338543_73338662_73339705
ENSMUSG00000031792.16_0	chr8	+	1724	7	FSM	ENSMUSG00000031792.16	ENSMUST00000034245.16	1758	7	34	0	-7	0	multi-exon	FALSE	canonical	3	182	junction_6	19.6185852927495	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTGTCTTATTTTAA	NA	False	NA	12	True	AATAAA	-13	NA	96058945	96074135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_96059094_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
ENSMUSG00000031792.16_1	chr8	+	1706	7	NIC	ENSMUSG00000031792.16	novel	1758	7	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	78.3212756677406	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTGTCTTATTTTAA	NA	False	NA	12	True	AATAAA	-13	NA	96058944	96074135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_96059075_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
ENSMUSG00000031796.8_0	chr8	-	2036	5	NIC	ENSMUSG00000031796.8	novel	1295	6	NA	NA	-6	0	intron_retention	FALSE	canonical	3	468	junction_1	23.0054341406547	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTATCTTTACTTTTTT	NA	False	NA	-9	True	AATAAA	-21	NA	96161430	96146879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_96147298_96147763_96148875_96149410_96149523_96151244_96151325_96161115
ENSMUSG00000031796.8_1	chr8	-	1226	6	FSM	ENSMUSG00000031796.8	ENSMUST00000034249.8	1295	6	66	3	-7	0	multi-exon	FALSE	canonical	3	468	junction_1	23.7200337267888	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTATCTTTACTTTTTT	NA	False	NA	-9	True	AATAAA	-21	NA	96161431	96146879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96151244_96151325_96161115
ENSMUSG00000031796.8_5	chr8	-	1149	5	FSM	ENSMUSG00000031796.8	ENSMUST00000212684.2	1023	5	24	-150	-10	0	multi-exon	FALSE	canonical	3	46	junction_4	193.603977231874	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTATCTTTACTTTTTT	NA	False	NA	-9	True	AATAAA	-21	NA	96161434	96146879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96161115
ENSMUSG00000031796.8_7	chr8	-	2505	4	FSM	ENSMUSG00000031796.8	ENSMUST00000213086.2	2544	4	39	0	-9	0	multi-exon	FALSE	canonical	3	502	junction_2	10.6562449087639	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTATCTTTACTTTTTT	NA	False	NA	-9	True	AATAAA	-21	NA	96161433	96146879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_96148875_96149410_96149523_96151244_96151325_96161115
ENSMUSG00000031799.11_1	chr8	+	2118	8	FSM	ENSMUSG00000031799.11	ENSMUST00000003575.11	2158	8	30	10	1	-8	multi-exon	FALSE	canonical	3	688	junction_1	35.3714978074559	921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAATGTGTCTGGATT	NA	False	NA	NA	False	AATAAA	-8	NA	72889102	72906976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ENSMUSG00000031799.11_19	chr8	+	2005	8	FSM	ENSMUSG00000031799.11	ENSMUST00000238492.2	2044	8	31	8	31	-8	multi-exon	FALSE	canonical	3	103	junction_1	228.433708510092	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAATGTGTCTGGATT	NA	False	NA	NA	False	AATAAA	-8	NA	72889682	72906976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72889765_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ENSMUSG00000031803.9_1	chr8	-	2453	2	ISM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	7963	457	7963	-457	3prime_fragment	FALSE	canonical	3	159	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGCCCGGTAATATTTCTG	NA	False	NA	-6	True	NA	NA	NA	72146470	72143856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_72145800_72145960
ENSMUSG00000031803.9_2	chr8	-	2475	1	Genic_Genomic	ENSMUSG00000031803.9	novel	NA	NA	NA	NA	8872	313	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAACTGGATTGTTGCAAT	NA	False	NA	-2	True	AATAAA	-17	NA	72145561	72143086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_72143100_72145600
ENSMUSG00000031803.9_4	chr8	-	2608	3	FSM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	-13	460	-13	-460	multi-exon	FALSE	canonical	3	105	junction_2	27	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCGCCCGGTAATATTT	8508	False	NA	-9	True	NA	NA	NA	72154446	72143859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_72145800_72145960_72146544_72154361
ENSMUSG00000031803.9_7	chr8	-	2646	3	NNC	ENSMUSG00000031803.9	novel	3055	3	NA	NA	-1744	-457	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	71.5	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGCCCGGTAATATTTCTG	6777	False	NA	-6	True	NA	NA	NA	72156177	72143856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_72145800_72145960_72146544_72156057
ENSMUSG00000031805.18_0	chr8	+	3792	25	FSM	ENSMUSG00000031805.18	ENSMUST00000051995.14	4019	25	226	1	-30	-1	multi-exon	TRUE	canonical	3	125	junction_24	33.9656689418399	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTTTTTTCCCCCCTGG	NA	False	NA	9	True	AATAAA	-12	NA	72129165	72143218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72129228_72130972_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202_72132489_72133078_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683_72140807_72142815
ENSMUSG00000031805.18_1	chr8	+	3523	24	FSM	ENSMUSG00000031805.18	ENSMUST00000110013.10	4009	24	235	251	-21	-251	multi-exon	FALSE	canonical	3	153	junction_6	28.4113052926296	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTCTGCGCGGTTGTCAG	NA	False	NA	20	True	ATTAAA	-12	NA	72129174	72140949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72129228_72130972_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202_72132489_72133078_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683
ENSMUSG00000031805.18_61	chr8	+	3473	23	ISM	ENSMUSG00000031805.18	ENSMUST00000110012.2	3774	24	775	253	-9	-251	3prime_fragment	FALSE	canonical	3	153	junction_5	28.5971231865279	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTCTGCGCGGTTGTCAG	NA	False	NA	20	True	ATTAAA	-12	NA	72130969	72140949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202_72132489_72133078_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683
ENSMUSG00000031807.11_0	chr8	+	883	5	FSM	ENSMUSG00000031807.11	ENSMUST00000034264.11	893	5	8	2	0	-2	multi-exon	FALSE	canonical	3	546	junction_2	58.7132864009502	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTATTGTTTCTGTGGTTC	NA	False	NA	13	True	ATTAAA	-13	NA	72044827	72048911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72045149_72046727_72046836_72047312_72047415_72047704_72047846_72048700
ENSMUSG00000031807.11_12	chr8	+	1144	5	FSM	ENSMUSG00000031807.11	ENSMUST00000143441.2	1062	5	-84	2	-4	-2	multi-exon	FALSE	canonical	3	15	junction_1	254.639941878724	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTATTGTTTCTGTGGTTC	NA	False	NA	13	True	ATTAAA	-13	NA	72044850	72048911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72045433_72046727_72046836_72047312_72047415_72047704_72047846_72048700
ENSMUSG00000031807.11_4	chr8	+	2450	4	NIC	ENSMUSG00000031807.11	novel	1062	5	NA	NA	12	-2	intron_retention	FALSE	canonical	3	546	junction_1	55.9185916211137	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTATTGTTTCTGTGGTTC	NA	False	NA	13	True	ATTAAA	-13	NA	72044839	72048911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_72046836_72047312_72047415_72047704_72047846_72048700
ENSMUSG00000031808.8_19	chr8	+	3179	12	NIC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	12	junction_1	50.3216102962725	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCTGCCAGAGCACAGCG	NA	False	NA	19	True	AATAAA	-15	NA	72022323	72039946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_72022486_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
ENSMUSG00000031808.8_39	chr8	+	2734	13	NIC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	50.2843995025628	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTGTTTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	72022812	72039351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_72022957_72023364_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
ENSMUSG00000031808.8_43	chr8	+	2629	12	ISM	ENSMUSG00000031808.8	ENSMUST00000034267.5	2795	14	1753	3	25	0	3prime_fragment	FALSE	canonical	1	37	junction_10	35.20847005532	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCTGGCTGTTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	72023323	72039349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
ENSMUSG00000031808.8_7	chr8	+	2743	13	NIC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	10	-1	combination_of_known_junctions	FALSE	canonical	1	37	junction_11	40.1631222502545	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTGTTTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	72022332	72039351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_72022486_72023364_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
ENSMUSG00000031812.17_0	chr8	+	1706	4	FSM	ENSMUSG00000031812.17	ENSMUST00000034270.17	2532	4	105	721	-11	-7	multi-exon	FALSE	canonical	3	2350	junction_2	129.422649571944	1057	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTGTCCTGAGTGATGT	9950	False	NA	9	True	AATAAA	-9	NA	122317204	122324778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_122317304_122320228_122320285_122322724_122322832_122323334
ENSMUSG00000031813.9_0	chr8	+	1057	9	FSM	ENSMUSG00000031813.9	ENSMUST00000034272.9	1062	9	3	2	3	-2	multi-exon	FALSE	canonical	3	346	junction_1	32.3177582762171	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTGGAGTGTATTGTT	NA	False	NA	9	True	AGTAAA	-16	NA	71995576	72000668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71995702_71995776_71995876_71996030_71996128_71997867_71997995_71998190_71998311_71998393_71998501_71999616_71999679_72000221_72000279_72000405
ENSMUSG00000031816.16_0	chr8	-	1294	10	FSM	ENSMUSG00000031816.16	ENSMUST00000133037.8	1060	10	55	-289	6	-5	multi-exon	FALSE	canonical	3	29	junction_2	18.6494629717802	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTAAGCTGCTTGTATGT	NA	False	NA	-16	True	NA	NA	NA	121835076	121824300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
ENSMUSG00000031816.16_1	chr8	-	1510	9	NIC	ENSMUSG00000031816.16	novel	1060	10	NA	NA	3	-3	intron_retention	FALSE	canonical	3	48	junction_6	14.260412862186	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAGCTGCTTGTATGTTT	NA	False	NA	-14	True	NA	NA	NA	121835063	121824298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
ENSMUSG00000031816.16_10	chr8	-	2367	8	NIC	ENSMUSG00000031816.16	novel	2415	8	NA	NA	-5	-5	intron_retention	FALSE	canonical	3	11	junction_5	24.5581359393649	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTAAGCTGCTTGTATGT	NA	False	NA	-16	True	NA	NA	NA	121835087	121824300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831298_121832312_121832427_121833608_121833713_121835026
ENSMUSG00000031816.16_11	chr8	-	120	1	ISM	ENSMUSG00000031816.16	ENSMUST00000047282.12	8312	8	10634	5937	3501	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTCTAAGCTGCTTGTA	5122	False	NA	-19	True	NA	NA	NA	121824423	121824303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_121824300_121824400
ENSMUSG00000031816.16_15	chr8	-	2247	7	NIC	ENSMUSG00000031816.16	novel	1366	10	NA	NA	669	-12	intron_retention	FALSE	canonical	3	48	junction_5	12.9571944837179	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACACAGTCTAAGCTGCT	NA	False	NA	-23	True	NA	NA	NA	121833713	121824307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608
ENSMUSG00000031816.16_16	chr8	-	1507	9	FSM	ENSMUSG00000031816.16	ENSMUST00000116415.9	1520	9	-2	15	-2	-11	multi-exon	FALSE	canonical	2	11	junction_6	25.939533052852	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACAGTCTAAGCTGCTT	NA	False	NA	-22	True	NA	NA	NA	121835068	121824306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832456_121832571_121833608_121833713_121835026
ENSMUSG00000031816.16_17	chr8	-	1911	8	NIC	ENSMUSG00000031816.16	novel	1060	10	NA	NA	0	-7	intron_retention	FALSE	canonical	3	48	junction_5	13.1413042560859	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACATCTCCTTGCAGGA	NA	False	NA	NA	False	ATTAAA	-16	NA	121835066	121824682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
ENSMUSG00000031816.16_18	chr8	-	1917	8	ISM	ENSMUSG00000031816.16	ENSMUST00000116415.9	1520	9	-2	387	-2	-3	5prime_fragment	FALSE	canonical	2	11	junction_5	27.5473618130147	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTCCTTGCAGGACTCA	NA	False	NA	NA	False	ATTAAA	-20	NA	121835068	121824678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832456_121832571_121833608_121833713_121835026
ENSMUSG00000031816.16_20	chr8	-	1971	8	NIC	ENSMUSG00000031816.16	novel	1520	9	NA	NA	-7	-7	intron_retention	FALSE	canonical	3	5	junction_5	29.1078220779647	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACATCTCCTTGCAGGA	NA	False	NA	NA	False	ATTAAA	-16	NA	121835073	121824682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831298_121832456_121832571_121833608_121833713_121835026
ENSMUSG00000031816.16_3	chr8	-	2306	7	ISM	ENSMUSG00000031816.16	ENSMUST00000128052.8	2415	8	1324	5	672	-3	3prime_fragment	FALSE	canonical	3	11	junction_5	25.2504125378841	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAGCTGCTTGTATGTTT	NA	False	NA	-14	True	NA	NA	NA	121833710	121824298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831298_121832312_121832427_121833608
ENSMUSG00000031816.16_30	chr8	-	1687	9	ISM	ENSMUSG00000031816.16	ENSMUST00000133037.8	1060	10	66	89	1	-3	5prime_fragment	FALSE	canonical	3	29	junction_1	19.012742437639	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTCCTTGCAGGACTCA	NA	False	NA	NA	False	ATTAAA	-20	NA	121835065	121824678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
ENSMUSG00000031816.16_7	chr8	-	3857	7	FSM	ENSMUSG00000031816.16	ENSMUST00000149718.8	3347	7	74	-584	5	200	multi-exon	FALSE	canonical	2	11	junction_4	29.3565249230142	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAGATGGCAAAGTGTCA	NA	False	NA	NA	False	NA	NA	NA	121835044	121824091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_121825892_121827857_121827984_121828162_121829744_121831130_121831245_121832456_121832571_121833608_121833713_121835026
ENSMUSG00000031818.13_0	chr8	+	677	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	68	0	-18	0	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	2054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121395028	121400946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
ENSMUSG00000031818.13_13	chr8	+	614	4	ISM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	1084	0	970	0	3prime_fragment	FALSE	canonical	3	8471	junction_2	387.458671631211	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121396044	121400946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_121396122_121399463_121399632_121399959_121400092_121400709
ENSMUSG00000031819.14_0	chr8	-	966	5	FSM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	50	3926	16	-7	multi-exon	FALSE	canonical	3	1135	junction_3	55.4301362076623	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCTGAGAAGTGTACACG	NA	False	NA	-29	True	ATTAAA	-22	NA	121394810	121384578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121387522_121387600_121394495
ENSMUSG00000031819.14_1	chr8	-	3175	1	ISM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	11027	6	10669	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTCCTCTCTGTG	NA	False	NA	-6	True	AATAAA	-17	NA	121383833	121380658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_121380700_121383800
ENSMUSG00000031820.10_0	chr8	+	1342	9	FSM	ENSMUSG00000031820.10	ENSMUST00000002473.10	1433	9	16	75	16	-75	multi-exon	FALSE	canonical	3	269	junction_4	29.4573314303927	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCACCCTTGGTGTCACT	NA	False	NA	14	True	AATAAA	-16	NA	71849520	71857188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71849665_71850322_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
ENSMUSG00000031820.10_2	chr8	+	1347	9	NNC	ENSMUSG00000031820.10	novel	1433	9	NA	NA	7	-75	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	103.031472740129	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCACCCTTGGTGTCACT	NA	False	NA	14	True	AATAAA	-16	NA	71849511	71857188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_71849665_71850326_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
ENSMUSG00000031821.12_1	chr8	-	1016	5	FSM	ENSMUSG00000031821.12	ENSMUST00000034278.6	3900	5	244	2640	-26	271	multi-exon	FALSE	canonical	3	1091	junction_3	31.7125763696361	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAGTACACTTAGAACG	NA	False	NA	82	True	AATACA	-9	NA	121315799	121308011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_121308551_121308820_121308948_121312831_121312932_121315463_121315579_121315664
ENSMUSG00000031821.12_2	chr8	-	1098	4	FSM	ENSMUSG00000031821.12	ENSMUST00000146526.8	3662	4	-76	2640	-22	271	multi-exon	FALSE	canonical	3	1091	junction_3	35.3647658929996	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAGTACACTTAGAACG	NA	False	NA	82	True	AATACA	-9	NA	121315795	121308011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_121308551_121308820_121308948_121312831_121312932_121315463
ENSMUSG00000031822.21_1	chr8	+	4885	16	FSM	ENSMUSG00000031822.21	ENSMUST00000034279.16	7127	16	308	1934	308	-24	multi-exon	FALSE	canonical	3	36	junction_1	28.9916463064027	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAAACCTTGC	NA	False	NA	90	True	NA	NA	NA	121215493	121306195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_121215891_121280322_121280542_121289364_121289565_121293106_121293280_121293665_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
ENSMUSG00000031822.21_15	chr8	+	4605	16	FSM	ENSMUSG00000031822.21	ENSMUST00000118136.2	4492	16	36	-149	36	-5	multi-exon	FALSE	canonical	3	77	junction_6	22.7797180745407	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAGTGTTTGTACTGCT	NA	False	NA	NA	False	AAAAAG	-10	NA	121264203	121306214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_121264302_121280322_121280542_121289364_121289565_121293106_121293280_121293665_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
ENSMUSG00000031822.21_25	chr8	+	3742	12	ISM	ENSMUSG00000031822.21	ENSMUST00000118136.2	4492	16	29561	-39	-4291	39	3prime_fragment	FALSE	canonical	3	77	junction_2	18.2371884160447	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATATGTGGTTTGGGGAA	NA	False	NA	-1	True	TATAAA	-14	NA	121293728	121306104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
ENSMUSG00000031822.21_27	chr8	+	3396	10	ISM	ENSMUSG00000031822.21	ENSMUST00000118136.2	4492	16	30842	-130	-3010	-24	3prime_fragment	FALSE	canonical	3	87	junction_2	16.5178541636872	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAAACCTTGC	NA	False	NA	90	True	NA	NA	NA	121295009	121306195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
ENSMUSG00000031822.21_30	chr8	+	4626	8	ISM	ENSMUSG00000031822.21	ENSMUST00000118136.2	4492	16	33433	-2043	-419	-21	3prime_fragment	FALSE	canonical	3	93	junction_3	13.5194493306525	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAATCATGTTAAGACGAA	NA	False	NA	0	True	AATAAA	-7	NA	121297600	121308108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
ENSMUSG00000031822.21_32	chr8	+	1949	6	ISM	ENSMUSG00000031822.21	ENSMUST00000118136.2	4492	16	35285	-35	1385	35	3prime_fragment	FALSE	canonical	3	93	junction_1	15.4064921380566	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTAATATGTGGTTTGG	NA	False	NA	-5	True	TATAAA	-10	NA	121299452	121306100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
ENSMUSG00000031822.21_38	chr8	+	2000	1	ISM	ENSMUSG00000031822.21	ENSMUST00000034279.16	7127	16	90930	14	8048	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTTAAGACGAAATTCATC	NA	False	NA	7	True	AATAAA	-14	NA	121306115	121308115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_121306100_121308100
ENSMUSG00000031822.21_7	chr8	+	4619	16	FSM	ENSMUSG00000031822.21	ENSMUST00000120493.8	4610	16	-33	24	-33	-24	multi-exon	FALSE	canonical	3	36	junction_1	28.9916463064027	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAAACCTTGC	NA	False	NA	90	True	NA	NA	NA	121262562	121306195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_121262694_121280322_121280542_121289364_121289565_121293106_121293280_121293665_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
ENSMUSG00000031823.15_0	chr8	-	2944	8	NIC	ENSMUSG00000031823.15	novel	3069	8	NA	NA	154	-209	combination_of_known_junctions	FALSE	canonical	3	5	junction_7	30.1465806772611	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCACCCTCCTGCAGC	NA	False	NA	-10	True	AATAAA	-14	NA	120828067	120807837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_120809456_120809968_120810100_120811582_120811665_120812083_120812181_120813367_120813493_120814492_120814824_120819655_120819741_120827592
ENSMUSG00000031823.15_1	chr8	-	2702	8	FSM	ENSMUSG00000031823.15	ENSMUST00000034280.9	3069	8	160	207	160	-207	multi-exon	FALSE	canonical	3	71	junction_3	9.07114735222145	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCACCCTCCTGCAGCCC	NA	False	NA	-8	True	AATAAA	-16	NA	120828061	120807835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_120809456_120809968_120810100_120811582_120811665_120812083_120812181_120813367_120813493_120814492_120814824_120819655_120819741_120827830
ENSMUSG00000031823.15_4	chr8	-	2231	6	ISM	ENSMUSG00000031823.15	ENSMUST00000034280.9	3069	8	13554	206	147	-206	3prime_fragment	FALSE	canonical	3	71	junction_3	10.6320270880016	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACCCTCCTGCAGCCCT	NA	False	NA	-7	True	AATAAA	-17	NA	120814667	120807834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_120809456_120809968_120810100_120811582_120811665_120812083_120812181_120813367_120813493_120814492
ENSMUSG00000031823.15_5	chr8	-	1224	1	ISM	ENSMUSG00000031823.15	ENSMUST00000034280.9	3069	8	19164	205	4517	-205	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACCCTCCTGCAGCCCTC	NA	False	NA	-6	True	AATAAA	-18	NA	120809057	120807833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_120807800_120809100
ENSMUSG00000031824.16_0	chr8	+	5524	12	FSM	ENSMUSG00000031824.16	ENSMUST00000108951.8	5531	12	1	6	1	-6	multi-exon	FALSE	canonical	0	0	junction_2	0.74965556829412	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAGTCAGATTAACT	7939	False	NA	NA	False	AATAAA	-10	NA	120840892	120892037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120841057_120871941_120872403_120876030_120876131_120876822_120876897_120878049_120878121_120879177_120879374_120880169_120880211_120880660_120880740_120883035_120883114_120886697_120886779_120887056_120887152_120887953
ENSMUSG00000031824.16_2	chr8	+	5207	9	NIC	ENSMUSG00000031824.16	novel	5531	12	NA	NA	1	-7	intron_retention	FALSE	canonical	0	0	junction_2	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAGAAGTCAGATTAAC	7939	False	NA	NA	False	AATAAA	-9	NA	120840892	120892036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_120841057_120871941_120872403_120876030_120876131_120876822_120876897_120878049_120878121_120883035_120883114_120886697_120886779_120887056_120887152_120887953
ENSMUSG00000031825.17_0	chr8	+	4131	15	FSM	ENSMUSG00000031825.17	ENSMUST00000034282.16	2898	15	-22	-1211	-22	-6	multi-exon	TRUE	canonical	0	0	junction_7	1.54523626091314	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACATACTGGTAGCACAT	NA	False	NA	NA	False	AATAAA	-16	NA	120719224	120779526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120719340_120737172_120737491_120740748_120740868_120742012_120742146_120742404_120742521_120745591_120745693_120750303_120750442_120752800_120752862_120755535_120755603_120756004_120756136_120757123_120757168_120757806_120757880_120760298_120760375_120766764_120766899_120777021
ENSMUSG00000031825.17_2	chr8	+	4130	15	FSM	ENSMUSG00000031825.17	ENSMUST00000132583.8	4182	15	46	6	-24	-6	multi-exon	FALSE	canonical	0	0	junction_7	1.49318178288335	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACATACTGGTAGCACAT	NA	False	NA	NA	False	AATAAA	-16	NA	120719222	120779526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120719340_120737172_120737491_120740748_120740868_120742012_120742146_120742404_120742521_120745591_120745693_120750306_120750442_120752800_120752862_120755535_120755603_120756004_120756136_120757123_120757168_120757806_120757880_120760298_120760375_120766764_120766899_120777021
ENSMUSG00000031825.17_3	chr8	+	3260	10	ISM	ENSMUSG00000031825.17	ENSMUST00000108972.4	2928	15	16194	-1211	5712	-6	3prime_fragment	FALSE	canonical	0	0	junction_2	1.63299316185545	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACATACTGGTAGCACAT	851	False	NA	NA	False	AATAAA	-16	NA	120745658	120779526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_120745693_120750306_120750442_120752800_120752862_120755535_120755603_120756004_120756136_120757123_120757168_120757806_120757880_120760298_120760375_120766764_120766899_120777021
ENSMUSG00000031826.21_0	chr8	+	3259	14	FSM	ENSMUSG00000031826.21	ENSMUST00000144458.8	3726	14	469	-2	-4	0	multi-exon	FALSE	canonical	3	816	junction_3	215.032734538435	1670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTGTTTCTTGGTGT	8842	False	NA	36	True	AATAAA	-18	NA	120637567	120684296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ENSMUSG00000031826.21_1	chr8	+	3256	14	FSM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	15	3	-4	0	multi-exon	FALSE	canonical	3	740	junction_3	231.479471146212	1442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTGTTTCTTGGTGT	8842	False	NA	36	True	AATAAA	-18	NA	120637567	120684296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ENSMUSG00000031826.21_112	chr8	+	2599	11	ISM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	30718	3	-2546	0	3prime_fragment	FALSE	canonical	3	1237	junction_3	101.385206021392	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTGTTTCTTGGTGT	4	False	NA	36	True	AATAAA	-18	NA	120668270	120684296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ENSMUSG00000031827.14_0	chr8	-	1589	4	FSM	ENSMUSG00000031827.14	ENSMUST00000034285.14	1596	4	4	3	4	0	multi-exon	FALSE	canonical	3	203	junction_1	12.9185482500507	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAATGAGTTGGGTTG	NA	False	NA	NA	False	AGTAAA	-11	NA	120567279	120535963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_120537095_120549392_120549551_120566880_120566964_120567062
ENSMUSG00000031827.14_1	chr8	-	1429	3	NIC	ENSMUSG00000031827.14	novel	1520	5	NA	NA	6	0	intron_retention	FALSE	canonical	1	6	junction_1	109	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAATGAGTTGGGTTG	NA	False	NA	NA	False	AGTAAA	-11	NA	120567277	120535963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_120537095_120566880_120566964_120567062
ENSMUSG00000031827.14_3	chr8	-	366	1	ISM	ENSMUSG00000031827.14	ENSMUST00000034285.14	1596	4	30954	3	13127	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAATGAGTTGGGTTG	2327	False	NA	NA	False	AGTAAA	-11	NA	120536329	120535963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_120536000_120536300
ENSMUSG00000031828.10_1	chr8	+	1109	4	NIC	ENSMUSG00000031828.10	novel	2181	5	NA	NA	-8	-15	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	7.03957069398096	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTTCACATATTATCTT	NA	False	NA	NA	False	ATTAAA	-9	NA	120588996	120603719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_120589187_120591741_120591819_120601113_120601272_120603035
ENSMUSG00000031828.10_2	chr8	+	2172	5	FSM	ENSMUSG00000031828.10	ENSMUST00000034287.10	2181	5	2	7	2	-7	multi-exon	FALSE	canonical	3	4	junction_3	6.86931583201704	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATTATCTTGTTTGAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	120589012	120603727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120589187_120591741_120591819_120596360_120597432_120601113_120601272_120603035
ENSMUSG00000031828.10_4	chr8	+	1338	3	FSM	ENSMUSG00000031828.10	ENSMUST00000212636.2	1354	3	16	0	10	0	multi-exon	FALSE	canonical	3	18	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCTTGAGGCCTCTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	120589020	120597455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120589187_120591741_120591819_120596360
ENSMUSG00000031828.10_6	chr8	+	596	1	ISM	ENSMUSG00000031828.10	ENSMUST00000034287.10	2181	5	14082	46	14082	-46	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACCACAGTAAATAATAATT	NA	False	NA	NA	False	NA	NA	NA	120603092	120603688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_120603100_120603700
ENSMUSG00000031831.7_1	chr8	+	2380	12	FSM	ENSMUSG00000031831.7	ENSMUST00000093100.3	2821	12	-169	610	-169	-610	multi-exon	FALSE	canonical	0	0	junction_2	1.65144564768954	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACGCACACAGTCAGCAC	NA	False	NA	NA	False	CATAAA	-7	NA	120301804	120324583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120302207_120304069_120304206_120305966_120306059_120309247_120309470_120309585_120309753_120314916_120315039_120317317_120317476_120318439_120318698_120321571_120321664_120322682_120322743_120323425_120323823_120324309
ENSMUSG00000031832.16_1	chr8	-	3219	15	FSM	ENSMUSG00000031832.16	ENSMUST00000093099.13	3236	15	16	1	0	-1	multi-exon	FALSE	canonical	1	17	junction_9	12.1866856085832	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGGTGTGTAAAGCCCA	1080	False	NA	-3	True	NA	NA	NA	120331945	120324714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280_120328520_120329569_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
ENSMUSG00000031832.16_18	chr8	-	1919	4	ISM	ENSMUSG00000031832.16	ENSMUST00000093099.13	3236	15	4708	4	199	-4	3prime_fragment	FALSE	canonical	3	42	junction_1	4.32049379893857	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTCTGGTGTGTAAAGC	5772	False	NA	-6	True	AATAAA	-44	NA	120327253	120324717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172
ENSMUSG00000031832.16_2	chr8	-	3296	14	NIC	ENSMUSG00000031832.16	novel	3474	14	NA	NA	0	-1	intron_retention	FALSE	canonical	1	17	junction_8	12.3996564182215	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGGTGTGTAAAGCCCA	1080	False	NA	-3	True	NA	NA	NA	120331945	120324714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280_120328520_120329569_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
ENSMUSG00000031832.16_3	chr8	-	2729	9	ISM	ENSMUSG00000031832.16	ENSMUST00000093099.13	3236	15	3369	6	-275	-6	3prime_fragment	FALSE	canonical	3	42	junction_1	4.78114787472632	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGTCTGGTGTGTAAA	4433	False	NA	-8	True	AATAAA	-42	NA	120328592	120324719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280
ENSMUSG00000031833.11_10	chr8	-	5203	27	NIC	ENSMUSG00000031833.11	novel	5305	27	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_26	10.3378576975671	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATACTGGTGTGTGCATTTG	NA	False	NA	-2	True	AATAAA	-18	NA	71257633	71230762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71232582_71232916_71233099_71233183_71233321_71233512_71233636_71233791_71234019_71234155_71234369_71234543_71234786_71236108_71236243_71236343_71236454_71236786_71236910_71237157_71237260_71237371_71237538_71238004_71238138_71238800_71238940_71239213_71239423_71239499_71239586_71239950_71240010_71240305_71240439_71240511_71240614_71240773_71240984_71241370_71241447_71241522_71241681_71241849_71241929_71242491_71242565_71242640_71242730_71252101_71252134_71257586
ENSMUSG00000031833.11_13	chr8	-	1115	1	ISM	ENSMUSG00000031833.11	ENSMUST00000212140.2	3047	8	4256	1	2156	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGGTGTGTGCATTTGT	NA	False	NA	-1	True	AATAAA	-19	NA	71231876	71230761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71230800_71231900
ENSMUSG00000031833.11_16	chr8	-	5313	27	FSM	ENSMUSG00000031833.11	ENSMUST00000166004.3	5305	27	-9	1	-9	-1	multi-exon	FALSE	canonical	1	1	junction_26	15.3892300771307	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGGTGTGTGCATTTGT	NA	False	NA	-1	True	AATAAA	-19	NA	71249641	71230761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71232582_71232916_71233099_71233183_71233321_71233512_71233636_71233791_71234019_71234155_71234369_71234543_71234786_71236108_71236243_71236343_71236454_71236786_71236910_71237157_71237260_71237371_71237538_71238004_71238138_71238800_71238940_71239213_71239423_71239499_71239586_71239950_71240010_71240305_71240439_71240511_71240614_71240773_71240984_71241370_71241447_71241522_71241681_71241849_71241929_71242491_71242565_71242640_71242730_71249356_71249447_71249543
ENSMUSG00000031833.11_22	chr8	-	5226	28	NIC	ENSMUSG00000031833.11	novel	5305	27	NA	NA	-7	-3	combination_of_known_junctions	FALSE	canonical	3	13	junction_24	13.9278958417586	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACTGGTGTGTGCATTT	NA	False	NA	-3	True	AATAAA	-17	NA	71257636	71230763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71232582_71232916_71233099_71233183_71233321_71233512_71233636_71233791_71234019_71234155_71234369_71234543_71234786_71236108_71236243_71236343_71236454_71236786_71236910_71237157_71237260_71237371_71237538_71238004_71238138_71238800_71238940_71239213_71239423_71239499_71239586_71239950_71240010_71240305_71240439_71240511_71240614_71240773_71240984_71241370_71241447_71241522_71241681_71241849_71241929_71242326_71242348_71242491_71242565_71242640_71242730_71252101_71252134_71257586
ENSMUSG00000031833.11_5	chr8	-	5326	26	FSM	ENSMUSG00000031833.11	ENSMUST00000211948.2	4251	26	11	-1086	-4	-1	multi-exon	FALSE	canonical	3	14	junction_25	10.6046027742674	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGGTGTGTGCATTTGT	NA	False	NA	-1	True	AATAAA	-19	NA	71245070	71230761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71232582_71232916_71233099_71233183_71233321_71233512_71233636_71233791_71234019_71234155_71234369_71234543_71234786_71236108_71236243_71236343_71236454_71236786_71236910_71237157_71237260_71237371_71237538_71238004_71238138_71238800_71238940_71239213_71239423_71239499_71239586_71239950_71240010_71240305_71240439_71240511_71240614_71240773_71240984_71241370_71241447_71241522_71241681_71241849_71241929_71242491_71242565_71242640_71242730_71244869
ENSMUSG00000031833.11_58	chr8	-	4440	19	ISM	ENSMUSG00000031833.11	ENSMUST00000211948.2	4251	26	4468	-1086	2809	-1	3prime_fragment	TRUE	canonical	3	41	junction_1	7.88203927989937	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGGTGTGTGCATTTGT	NA	False	NA	-1	True	AATAAA	-19	NA	71240613	71230761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71232582_71232916_71233099_71233183_71233321_71233512_71233636_71233791_71234019_71234155_71234369_71234543_71234786_71236108_71236243_71236343_71236454_71236786_71236910_71237157_71237260_71237371_71237538_71238004_71238138_71238800_71238940_71239213_71239423_71239499_71239586_71239950_71240010_71240305_71240439_71240511
ENSMUSG00000031834.16_2	chr8	-	3148	16	FSM	ENSMUSG00000031834.16	ENSMUST00000034296.15	3165	16	13	4	13	-4	multi-exon	TRUE	canonical	3	127	junction_15	21.8259784049498	327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGAGTGTCTTTGGGGA	NA	False	NA	-12	True	NA	NA	NA	71229344	71220823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71221542_71221705_71221877_71221991_71222064_71222232_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71227299_71227997_71229250
ENSMUSG00000031835.17_0	chr8	-	4204	23	FSM	ENSMUSG00000031835.17	ENSMUST00000081381.6	4195	23	-10	1	-10	-1	multi-exon	FALSE	canonical	3	394	junction_22	51.0282088571954	931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAAGCTGGCATGTGTCG	8131	False	NA	-8	True	AATAAA	-13	NA	120285484	120234895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
ENSMUSG00000031835.17_1	chr8	-	3923	22	ISM	ENSMUSG00000031835.17	ENSMUST00000098362.11	4336	24	11022	2	-8739	-2	3prime_fragment	FALSE	canonical	3	424	junction_17	46.5081857082007	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAAAGCTGGCATGTGTC	NA	False	NA	-9	True	AATAAA	-12	NA	120274444	120234896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138
ENSMUSG00000031835.17_3	chr8	-	4163	23	NIC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	-7	-1	combination_of_known_junctions	FALSE	canonical	3	33	junction_22	108.399513584954	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAAGCTGGCATGTGTCG	8428	False	NA	-8	True	AATAAA	-13	NA	120285187	120234895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285128
ENSMUSG00000031835.17_34	chr8	-	3475	21	ISM	ENSMUSG00000031835.17	ENSMUST00000098362.11	4336	24	12629	1	-7132	-1	3prime_fragment	FALSE	canonical	3	424	junction_17	46.7904637720123	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAAGCTGGCATGTGTCG	NA	False	NA	-8	True	AATAAA	-13	NA	120272837	120234895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722
ENSMUSG00000031837.15_0	chr8	+	1726	13	FSM	ENSMUSG00000031837.15	ENSMUST00000098363.10	1976	13	243	7	243	-7	multi-exon	FALSE	canonical	3	44	junction_3	4.71625439894367	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGTGTGTCGTGTCTCTG	NA	False	NA	4	True	AATAAA	-12	NA	120173700	120199372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120174004_120176820_120176846_120178820_120178930_120180939_120180966_120181097_120181196_120189299_120189437_120191640_120191760_120191891_120191972_120194329_120194384_120195007_120195121_120197646_120197725_120198478_120198571_120198880
ENSMUSG00000031837.15_1	chr8	+	4793	12	NIC	ENSMUSG00000031837.15	novel	1976	13	NA	NA	-10	-10	intron_retention	FALSE	canonical	3	44	junction_2	4.70975776254132	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACAGTGTGTCGTGTCT	NA	False	NA	1	True	AATAAA	-9	NA	120173447	120199369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_120176846_120178820_120178930_120180939_120180966_120181097_120181196_120189299_120189437_120191640_120191760_120191891_120191972_120194329_120194384_120195007_120195121_120197646_120197725_120198478_120198571_120198880
ENSMUSG00000031837.15_5	chr8	+	1255	9	ISM	ENSMUSG00000031837.15	ENSMUST00000098363.10	1976	13	7648	7	1935	-7	3prime_fragment	FALSE	canonical	3	52	junction_2	2.75850956133924	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGTGTGTCGTGTCTCTG	NA	False	NA	4	True	AATAAA	-12	NA	120181105	120199372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_120181196_120189299_120189437_120191640_120191760_120191891_120191972_120194329_120194384_120195007_120195121_120197646_120197725_120198478_120198571_120198880
ENSMUSG00000031838.11_0	chr8	-	980	7	FSM	ENSMUSG00000031838.11	ENSMUST00000222087.4	980	7	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_6	19.0065778087482	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTTTCCTAGAGTTG	NA	False	NA	-15	True	AATAAA	-18	NA	71219307	71215418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71215686_71215772_71215827_71216371_71216525_71217191_71217285_71217363_71217439_71217563_71217747_71219152
ENSMUSG00000031838.11_3	chr8	-	803	6	ISM	ENSMUSG00000031838.11	ENSMUST00000222087.4	980	7	1583	0	1583	0	3prime_fragment	FALSE	canonical	3	202	junction_5	15.8745078663875	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTTTCCTAGAGTTG	NA	False	NA	-15	True	AATAAA	-18	NA	71217724	71215418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71215686_71215772_71215827_71216371_71216525_71217191_71217285_71217363_71217439_71217563
ENSMUSG00000031838.11_4	chr8	-	265	1	ISM	ENSMUSG00000031838.11	ENSMUST00000222087.4	980	7	3624	0	3624	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTTTCCTAGAGTTG	NA	False	NA	-15	True	AATAAA	-18	NA	71215683	71215418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71215400_71215700
ENSMUSG00000031839.8_0	chr8	+	524	4	FSM	ENSMUSG00000031839.8	ENSMUST00000034300.8	1208	4	20	664	-8	-85	multi-exon	FALSE	canonical	0	0	junction_2	885.438121308692	398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTGTCAAACGTTTTAG	NA	False	NA	24	True	ATTAAA	-27	NA	120071246	120074997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120071360_120071674_120071742_120072351_120072473_120074774
ENSMUSG00000031840.15_0	chr8	+	1339	5	FSM	ENSMUSG00000031840.15	ENSMUST00000034301.12	1363	5	-7	31	1	-31	multi-exon	FALSE	canonical	3	41	junction_1	7.43303437365925	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTCTGCTGGCCCAGCC	NA	False	NA	15	True	AATAAA	-15	NA	71207352	71211250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71207513_71208502_71208731_71209093_71209213_71209783_71209909_71210543
ENSMUSG00000031840.15_1	chr8	+	1343	5	FSM	ENSMUSG00000031840.15	ENSMUST00000110093.9	1442	5	26	73	2	-31	multi-exon	FALSE	canonical	3	27	junction_1	12.8646803302686	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTCTGCTGGCCCAGCC	NA	False	NA	15	True	AATAAA	-15	NA	71207353	71211250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71207518_71208502_71208731_71209093_71209213_71209783_71209909_71210543
ENSMUSG00000031840.15_3	chr8	+	868	3	ISM	ENSMUSG00000031840.15	ENSMUST00000110092.6	1555	4	1019	31	73	-31	3prime_fragment	FALSE	canonical	3	51	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTCTGCTGGCCCAGCC	NA	False	NA	15	True	AATAAA	-15	NA	71209176	71211250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71209213_71209783_71209909_71210543
ENSMUSG00000031842.16_1	chr8	+	3087	15	NIC	ENSMUSG00000031842.16	novel	3380	18	NA	NA	6005	-6	combination_of_known_junctions	TRUE	canonical	1	2	junction_14	1.66598625567009	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71182718	71203815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_71182934_71197922_71198115_71198515_71198553_71198636_71198708_71198832_71198886_71199180_71199294_71199435_71199530_71199868_71200030_71200115_71200215_71200463_71200629_71200705_71200806_71201016_71201172_71201559_71201683_71201871_71202055_71202489
ENSMUSG00000031842.16_14	chr8	+	3009	15	FSM	ENSMUSG00000031842.16	ENSMUST00000224874.2	3099	15	81	9	34	-6	multi-exon	FALSE	canonical	1	2	junction_14	1.61150202466835	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71195761	71203815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71195899_71197922_71198115_71198515_71198553_71198636_71198708_71198832_71198886_71199180_71199294_71199435_71199530_71199868_71200030_71200115_71200215_71200463_71200629_71200705_71200806_71201016_71201172_71201559_71201683_71201871_71202055_71202489
ENSMUSG00000031842.16_7	chr8	+	3695	13	NIC	ENSMUSG00000031842.16	novel	3099	15	NA	NA	31	-6	intron_retention	FALSE	canonical	1	2	junction_12	1.68942791105944	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71195758	71203815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_71195899_71197922_71198115_71198515_71198553_71198636_71198708_71198832_71199294_71199435_71199530_71199868_71200030_71200115_71200215_71200463_71200629_71200705_71200806_71201016_71201683_71201871_71202055_71202489
ENSMUSG00000031843.3_0	chr8	-	1063	5	FSM	ENSMUSG00000031843.3	ENSMUST00000034303.3	1068	5	5	0	5	0	multi-exon	FALSE	canonical	3	669	junction_1	47.4572175754121	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAAGTAATTTTAG	NA	False	NA	-12	True	AATAAA	-22	NA	118528677	118518383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_118519058_118519417_118519516_118521319_118521411_118525782_118525896_118528590
ENSMUSG00000031843.3_2	chr8	-	2862	4	NIC	ENSMUSG00000031843.3	novel	1068	5	NA	NA	-6	0	intron_retention	FALSE	canonical	3	669	junction_1	54.7986212316413	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAAGTAATTTTAG	NA	False	NA	-12	True	AATAAA	-22	NA	118528672	118518383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_118519058_118519417_118521411_118525782_118525896_118528590
ENSMUSG00000031843.3_8	chr8	-	318	3	FSM	ENSMUSG00000031843.3	ENSMUST00000211818.2	887	3	-11	580	5	-580	multi-exon	FALSE	canonical	3	698	junction_1	49.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATTTTTCCAATTG	NA	False	NA	NA	False	ATTAAA	-20	NA	118528677	118521292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_118521411_118525782_118525896_118528590
ENSMUSG00000031844.9_0	chr8	+	1273	5	FSM	ENSMUSG00000031844.9	ENSMUST00000034304.9	1320	5	46	1	46	-1	multi-exon	FALSE	canonical	1	1	junction_3	2.69258240356725	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATTCTTATTTTGAAATG	NA	False	NA	NA	False	ATTAAA	-15	NA	118428688	118485765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_118429003_118461232_118461446_118469070_118469257_118479924_118480063_118485343
ENSMUSG00000031847.9_0	chr8	-	1239	1	ISM	ENSMUSG00000031847.9	ENSMUST00000070577.7	2976	3	7601	510	7601	-510	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTGAATTGCTTAGAGTA	NA	False	NA	NA	False	ATTAAA	-18	NA	117698081	117696842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_117696800_117698100
ENSMUSG00000031847.9_1	chr8	-	2971	3	FSM	ENSMUSG00000031847.9	ENSMUST00000070577.7	2976	3	-4	9	-4	-9	multi-exon	FALSE	canonical	2	7	junction_1	2	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGAAATTGGCTCTCTC	8537	False	NA	NA	False	AATAAA	-19	NA	117705686	117696341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_117698896_117700190_117700439_117705517
ENSMUSG00000031847.9_2	chr8	-	2982	3	FSM	ENSMUSG00000031847.9	ENSMUST00000213068.2	1482	3	0	-1500	0	-14	multi-exon	FALSE	canonical	1	4	junction_2	1.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCCAAAGAGAAATTGGCT	8525	False	NA	NA	False	AATAAA	-14	NA	117705698	117696346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_117698896_117700190_117700439_117705513
ENSMUSG00000031848.16_0	chr8	+	769	5	FSM	ENSMUSG00000031848.16	ENSMUST00000034311.15	925	5	140	16	3	-10	multi-exon	FALSE	canonical	3	2963	junction_1	310.191070148707	1122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACACCATAGAAAGAGCCA	NA	False	NA	4	True	AATAAA	-4	NA	71126037	71131386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71126108_71129204_71129247_71130427_71130527_71130603_71130785_71131009
ENSMUSG00000031849.10_1	chr8	+	2549	19	FSM	ENSMUSG00000031849.10	ENSMUST00000003659.9	2416	19	-134	1	-134	0	multi-exon	FALSE	canonical	0	0	junction_8	1.24225998749988	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCTGGCTTTGGTCGCT	NA	False	NA	NA	False	AATAAA	-16	NA	70826073	70834715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70826298_70826502_70826589_70827022_70827075_70827454_70827625_70828379_70828518_70828691_70828767_70828846_70829006_70829087_70829193_70829285_70829394_70829746_70829907_70831263_70831383_70831547_70831601_70831683_70831866_70832043_70832223_70832330_70832380_70832754_70832952_70833894_70834068_70834321_70834462_70834535
ENSMUSG00000031851.15_0	chr8	+	1485	4	FSM	ENSMUSG00000031851.15	ENSMUST00000065135.12	1497	4	8	4	8	-4	multi-exon	FALSE	canonical	3	8	junction_3	41.4273125150814	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCCATGTCTAATTAG	NA	False	NA	NA	False	ACTAAA	-11	NA	126460984	126465914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126464793
ENSMUSG00000031851.15_1	chr8	+	1096	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	34	25	-1	-25	multi-exon	FALSE	canonical	3	50	junction_2	22.4388056723169	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAATGTGGTGGTTCAG	NA	False	NA	-2	True	AATAAA	-6	NA	126460975	126474949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
ENSMUSG00000031851.15_3	chr8	+	1051	5	NNC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	39	-25	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	25.0499500997507	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAATGTGGTGGTTCAG	NA	False	NA	-2	True	AATAAA	-6	NA	126461015	126474949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_126461089_126462806_126462965_126464061_126464159_126471974_126472185_126474436
ENSMUSG00000031851.15_4	chr8	+	1477	4	NNC	ENSMUSG00000031851.15	novel	1497	4	NA	NA	11	-4	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	41.9602986961088	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCCATGTCTAATTAG	NA	False	NA	NA	False	ACTAAA	-11	NA	126460987	126465914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_126461089_126462806_126462965_126464061_126464159_126464793
ENSMUSG00000031851.15_6	chr8	+	2124	4	NIC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	49	-39	intron_retention	FALSE	canonical	3	65	junction_2	17.9691092959247	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACTAATAAAAATGGAAATAA	NA	False	NA	-16	True	NA	NA	NA	126461025	126474935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_126461089_126462806_126464159_126471974_126472185_126474436
ENSMUSG00000031858.17_11	chr8	-	3321	18	NIC	ENSMUSG00000031858.17	novel	5369	19	NA	NA	-2	0	intron_retention	TRUE	canonical	3	161	junction_6	43.9600321777151	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTCCTGATGTTAGAG	NA	False	NA	-6	True	NA	NA	NA	70495347	70471216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70472311_70472396_70472525_70473069_70473161_70474785_70474898_70475005_70475084_70475269_70475320_70476263_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268_70481886_70483291_70483387_70484112_70484209_70485828_70485895_70486260_70486279_70495041
ENSMUSG00000031858.17_12	chr8	-	4267	17	FSM	ENSMUSG00000031858.17	ENSMUST00000212401.2	4269	17	1	1	1	0	multi-exon	FALSE	canonical	3	224	junction_12	31.9916370908086	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTCCTGATGTTAGAG	NA	False	NA	-6	True	NA	NA	NA	70495349	70471216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70472311_70472396_70472525_70473069_70473161_70474785_70474898_70475005_70475084_70475269_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268_70481886_70483291_70483387_70484112_70484209_70485828_70485895_70486260_70486279_70495041
ENSMUSG00000031858.17_3	chr8	-	2893	19	FSM	ENSMUSG00000031858.17	ENSMUST00000212451.2	1931	19	35	-997	1	0	multi-exon	FALSE	canonical	3	104	junction_6	54.8951019875382	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTCCTGATGTTAGAG	NA	False	NA	-6	True	NA	NA	NA	70495349	70471216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70472311_70472396_70472525_70473069_70473161_70474785_70474898_70475005_70475084_70475269_70475320_70476260_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268_70481425_70481857_70481886_70483291_70483387_70484112_70484209_70485828_70485895_70486260_70486279_70495041
ENSMUSG00000031858.17_4	chr8	-	2890	19	FSM	ENSMUSG00000031858.17	ENSMUST00000050561.13	5369	19	35	2444	1	0	multi-exon	FALSE	canonical	3	161	junction_6	45.5936155374607	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTCCTGATGTTAGAG	NA	False	NA	-6	True	NA	NA	NA	70495349	70471216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70472311_70472396_70472525_70473069_70473161_70474785_70474898_70475005_70475084_70475269_70475320_70476263_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268_70481425_70481857_70481886_70483291_70483387_70484112_70484209_70485828_70485895_70486260_70486279_70495041
ENSMUSG00000031860.18_0	chr8	+	821	4	NIC	ENSMUSG00000031860.18	novel	823	5	NA	NA	16	-3	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	13.4246870437348	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTCCAGTGTTTTCAATA	2089	False	NA	2	True	ATTAAA	-15	NA	70285156	70324939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70285502_70311729_70311804_70323227_70323335_70324644
ENSMUSG00000031860.18_1	chr8	+	842	5	FSM	ENSMUSG00000031860.18	ENSMUST00000132899.8	823	5	-23	4	2	-4	multi-exon	FALSE	canonical	0	0	junction_2	15.6744218394172	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTCCAGTGTTTTCAAT	2221	False	NA	1	True	ATTAAA	-14	NA	70285288	70324938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70285502_70311729_70311804_70322678_70322833_70323227_70323335_70324644
ENSMUSG00000031860.18_2	chr8	+	2530	6	NIC	ENSMUSG00000031860.18	novel	1101	7	NA	NA	0	-1	intron_retention	FALSE	canonical	3	3	junction_2	13.001538370516	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCAGTGTTTTCAATACA	2242	False	NA	4	True	ATTAAA	-17	NA	70285309	70324941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70285502_70311729_70311804_70317547_70319254_70322678_70322833_70323227_70323335_70324644
ENSMUSG00000031860.18_3	chr8	+	2577	6	NIC	ENSMUSG00000031860.18	novel	1560	8	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	9	junction_2	10.870142593361	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCAGTGTTTTCAATACA	2269	False	NA	4	True	ATTAAA	-17	NA	70285336	70324941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70285502_70311729_70311804_70317473_70319254_70322678_70322833_70323227_70323335_70324644
ENSMUSG00000031860.18_4	chr8	+	1140	7	NIC	ENSMUSG00000031860.18	novel	1560	8	NA	NA	9	-1	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	12.3659478676997	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCAGTGTTTTCAATACA	2253	False	NA	4	True	ATTAAA	-17	NA	70285320	70324941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70285502_70311729_70311804_70317473_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
ENSMUSG00000031861.17_0	chr8	+	2691	3	FSM	ENSMUSG00000031861.17	ENSMUST00000034325.6	5837	3	166	2980	11	-2979	multi-exon	FALSE	canonical	3	18	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACGGAAAACGTCTCTT	500	False	NA	NA	False	ATTAAA	-14	NA	70275244	70280772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70275362_70276203_70276946_70278940
ENSMUSG00000031861.17_2	chr8	+	1539	2	FSM	ENSMUSG00000031861.17	ENSMUST00000238452.2	1350	2	29	-218	29	218	multi-exon	FALSE	canonical	3	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCTGGTTGTTATTTTT	518	False	NA	NA	False	ATTAAA	-13	NA	70275262	70277643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70275362_70276203
ENSMUSG00000031861.17_4	chr8	+	2653	4	NNC	ENSMUSG00000031861.17	novel	5837	3	NA	NA	29	-2979	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8.48528137423857	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACGGAAAACGTCTCTT	518	False	NA	NA	False	ATTAAA	-14	NA	70275262	70280772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_70275362_70276203_70276946_70278940_70280546_70280565
ENSMUSG00000031862.12_2	chr8	+	3834	26	FSM	ENSMUSG00000031862.12	ENSMUST00000034326.7	3915	26	76	5	-11	-1	multi-exon	TRUE	canonical	3	203	junction_10	47.3625337160081	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGCTTGCTGCCACTTA	9240	False	NA	NA	False	AATAAA	-18	NA	70243888	70260394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251164_70251233_70251372_70251461_70251583_70251970_70252129_70252411_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
ENSMUSG00000031862.12_3	chr8	+	3904	25	NIC	ENSMUSG00000031862.12	novel	3915	26	NA	NA	-11	-1	intron_retention	FALSE	canonical	3	223	junction_12	42.3897262186121	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGCTTGCTGCCACTTA	9240	False	NA	NA	False	AATAAA	-18	NA	70243888	70260394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251372_70251461_70251583_70251970_70252129_70252411_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
ENSMUSG00000031862.12_8	chr8	+	3830	25	NIC	ENSMUSG00000031862.12	novel	3915	26	NA	NA	-7	-1	intron_retention	FALSE	canonical	3	87	junction_12	60.2107410129898	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGCTTGCTGCCACTTA	9244	False	NA	NA	False	AATAAA	-18	NA	70243892	70260394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251372_70251461_70251583_70251970_70252129_70252481_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
ENSMUSG00000031862.12_9	chr8	+	3759	26	NIC	ENSMUSG00000031862.12	novel	3915	26	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	3	87	junction_13	62.842609748482	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGCTTGCTGCCACTTA	9245	False	NA	NA	False	AATAAA	-18	NA	70243893	70260394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251164_70251233_70251372_70251461_70251583_70251970_70252129_70252481_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
ENSMUSG00000031864.17_0	chr8	+	3146	18	NNC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	-4	-810	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	169.630210471184	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTATTGTCCATATTCC	NA	False	NA	NA	False	AATAAA	-17	NA	69246621	69281250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928_69280809_69281010
ENSMUSG00000031864.17_1	chr8	+	2401	17	FSM	ENSMUSG00000031864.17	ENSMUST00000034328.13	4201	17	42	1758	-3	151	multi-exon	FALSE	canonical	3	438	junction_4	79.6960779696843	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAACTTATTTTTAG	NA	False	NA	21	True	AATAAA	-23	NA	69246622	69280304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
ENSMUSG00000031864.17_12	chr8	+	2481	18	FSM	ENSMUSG00000031864.17	ENSMUST00000070713.8	4192	18	-46	1757	-6	150	multi-exon	FALSE	canonical	3	14	junction_17	216.037065895717	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAACTTATTTTTA	NA	False	NA	20	True	AATAAA	-22	NA	69246619	69280303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69277703_69277782_69279928
ENSMUSG00000031864.17_2	chr8	+	2398	17	NNC	ENSMUSG00000031864.17	novel	4201	17	NA	NA	3	151	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_9	163.936296697833	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAACTTATTTTTAG	NA	False	NA	21	True	AATAAA	-23	NA	69246628	69280304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263227_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
ENSMUSG00000031865.17_1	chr6	+	4086	28	FSM	ENSMUSG00000031865.17	ENSMUST00000077407.12	4118	28	32	0	1	0	multi-exon	TRUE	canonical	3	372	junction_1	39.6793042772762	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTCTGTGTGGCTCT	525	False	NA	NA	False	ATTAAA	-15	NA	83142933	83177098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83142977_83159505_83159752_83160040_83160120_83160280_83160316_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402_83167563_83167674_83167780_83167950_83168143_83168226_83168344_83168547_83168701_83169441_83169603_83169715_83169885_83170688_83170758_83170940_83171004_83171101_83171252_83171411_83171574_83171655_83171788_83171969_83172096_83172529_83172673_83172922_83173090_83174472_83174607_83174737_83174931_83175563_83175644_83176169_83176260_83176655
ENSMUSG00000031865.17_15	chr6	+	4148	28	NIC	ENSMUSG00000031865.17	novel	4118	28	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	89.8211910680514	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTCTGTGTGGCTCT	537	False	NA	NA	False	ATTAAA	-15	NA	83142945	83177098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83143051_83159505_83159752_83160040_83160120_83160280_83160316_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402_83167563_83167674_83167780_83167950_83168143_83168226_83168344_83168547_83168701_83169441_83169603_83169715_83169885_83170688_83170758_83170940_83171004_83171101_83171252_83171411_83171574_83171655_83171788_83171969_83172096_83172529_83172673_83172922_83173090_83174472_83174607_83174737_83174931_83175563_83175644_83176169_83176260_83176655
ENSMUSG00000031865.17_74	chr6	+	4046	27	ISM	ENSMUSG00000031865.17	ENSMUST00000077407.12	4118	28	16601	0	2908	0	3prime_fragment	FALSE	canonical	3	396	junction_14	37.377175581334	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTCTGTGTGGCTCT	3016	False	NA	NA	False	ATTAAA	-15	NA	83159502	83177098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_83159752_83160040_83160120_83160280_83160316_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402_83167563_83167674_83167780_83167950_83168143_83168226_83168344_83168547_83168701_83169441_83169603_83169715_83169885_83170688_83170758_83170940_83171004_83171101_83171252_83171411_83171574_83171655_83171788_83171969_83172096_83172529_83172673_83172922_83173090_83174472_83174607_83174737_83174931_83175563_83175644_83176169_83176260_83176655
ENSMUSG00000031870.17_0	chr9	+	4774	8	FSM	ENSMUSG00000031870.17	ENSMUST00000189181.7	6889	8	1283	832	648	-832	multi-exon	FALSE	canonical	1	1	junction_4	2.32992949004287	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGAATACCTGGGAACT	548	False	NA	NA	False	AATAAA	-24	NA	8901116	8967780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_8902085_8903596_8903749_8922599_8922717_8946645_8946952_8956244_8956390_8958330_8958462_8961396_8961555_8964983
ENSMUSG00000031870.17_1	chr9	+	2034	4	FSM	ENSMUSG00000031870.17	ENSMUST00000151080.2	3897	4	1098	765	1049	-765	multi-exon	FALSE	canonical	3	5	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAATTCAATTATTATTT	949	False	NA	NA	False	ATTAAA	-25	NA	8901517	8947843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_8902085_8903596_8903749_8922599_8922717_8946645
ENSMUSG00000031875.8_0	chr8	+	1600	6	FSM	ENSMUSG00000031875.8	ENSMUST00000212081.2	850	6	-31	-719	-31	-3	multi-exon	FALSE	canonical	0	0	junction_1	15.7784663386528	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCTTGGAGTGCGCCTG	NA	False	NA	10	True	ATTAAA	-12	NA	105066918	105074301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_105066992_105067311_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363
ENSMUSG00000031875.8_2	chr8	+	1560	6	NIC	ENSMUSG00000031875.8	novel	1616	5	NA	NA	-46	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	15.4090882274066	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTGGAGTGCGCCTGAC	NA	False	NA	12	True	ATTAAA	-14	NA	105067112	105074303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_105067144_105067311_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363
ENSMUSG00000031875.8_3	chr8	+	1516	5	FSM	ENSMUSG00000031875.8	ENSMUST00000034343.5	1616	5	96	4	-26	-4	multi-exon	FALSE	canonical	3	32	junction_1	6.68954408012983	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGCTTGGAGTGCGCCT	NA	False	NA	9	True	ATTAAA	-11	NA	105067321	105074300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363
ENSMUSG00000031875.8_5	chr8	+	4786	3	NIC	ENSMUSG00000031875.8	novel	1616	5	NA	NA	413	-20	intron_retention	FALSE	canonical	3	32	junction_1	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAAACAAACTGACTACA	NA	False	NA	-7	True	AAAAAG	-10	NA	105067760	105074284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_105071505_105071903_105072025_105073363
ENSMUSG00000031878.19_1	chr8	-	1778	20	FSM	ENSMUSG00000031878.19	ENSMUST00000034349.10	1808	20	28	2	-1	-2	multi-exon	FALSE	canonical	3	645	junction_15	52.7352662859429	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATAGTCTTGTTGTCTGG	3361	False	NA	NA	False	AATAAA	-17	NA	105261241	105237661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ENSMUSG00000031878.19_3	chr8	-	1706	19	FSM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	27	2	-1	-2	multi-exon	FALSE	canonical	3	78	junction_15	163.229558869982	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATAGTCTTGTTGTCTGG	3361	False	NA	NA	False	AATAAA	-17	NA	105261241	105237661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ENSMUSG00000031879.15_0	chr8	-	650	5	FSM	ENSMUSG00000031879.15	ENSMUST00000164884.9	918	5	257	11	-7	-1	multi-exon	FALSE	canonical	0	0	junction_4	327.680484618782	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCCAGTATGCCTTAGC	NA	False	NA	-11	True	AATAAA	-17	NA	105368340	105366480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942_105368023_105368180
ENSMUSG00000031879.15_1	chr8	-	792	4	FSM	ENSMUSG00000031879.15	ENSMUST00000163140.2	807	4	7	8	7	-1	multi-exon	FALSE	canonical	3	675	junction_1	52.8288641642889	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCCAGTATGCCTTAGC	NA	False	NA	-11	True	AATAAA	-17	NA	105368324	105366480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942
ENSMUSG00000031881.7_0	chr8	-	125	1	ISM	ENSMUSG00000031881.7	ENSMUST00000212318.2	586	2	11229	0	11229	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTGTCTTAGCTGCAT	NA	False	NA	NA	False	NA	NA	NA	105328667	105328542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_105328500_105328700
ENSMUSG00000031885.15_19	chr8	+	2430	4	ISM	ENSMUSG00000031885.15	ENSMUST00000109392.9	2891	6	7913	0	7038	0	3prime_fragment	FALSE	canonical	3	129	junction_3	34.2571971351358	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGTCATGACTCTT	4789	False	NA	74	True	ATTAAA	-14	NA	105905233	105944613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_105905342_105921106_105921224_105929083_105929211_105942535
ENSMUSG00000031885.15_24	chr8	+	1674	1	ISM	ENSMUSG00000031885.15	ENSMUST00000052209.9	2883	6	45634	8	44744	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGTCATGACTCTT	NA	False	NA	74	True	ATTAAA	-14	NA	105942939	105944613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_105942900_105944600
ENSMUSG00000031885.15_4	chr8	+	2711	6	FSM	ENSMUSG00000031885.15	ENSMUST00000109392.9	2891	6	178	2	-78	-2	multi-exon	FALSE	canonical	3	129	junction_5	26.6578318698277	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAACAAAGTCATGACTC	3939	False	NA	72	True	ATTAAA	-12	NA	105897498	105944611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
ENSMUSG00000031885.15_5	chr8	+	2683	6	FSM	ENSMUSG00000031885.15	ENSMUST00000052209.9	2883	6	191	9	-80	-1	multi-exon	FALSE	canonical	3	84	junction_5	43.0748186299142	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACAAAGTCATGACTCT	3937	False	NA	73	True	ATTAAA	-13	NA	105897496	105944612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929180_105942535
ENSMUSG00000031887.14_0	chr8	-	1547	5	NIC	ENSMUSG00000031887.14	novel	1689	5	NA	NA	2	-289	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	28.2400424928859	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACTTGCGGAGATGCTG	535	False	NA	-12	True	AATAAA	-14	NA	105991211	105985206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_105985928_105986068_105986262_105986341_105986797_105987153_105987313_105991192
ENSMUSG00000031887.14_1	chr8	-	1384	5	FSM	ENSMUSG00000031887.14	ENSMUST00000034359.10	1689	5	18	287	-10	-287	multi-exon	FALSE	canonical	3	50	junction_4	9.66953980290686	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGCGGAGATGCTGAG	523	False	NA	-10	True	AATAAA	-16	NA	105991223	105985204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_105985928_105986068_105986262_105986341_105986620_105987153_105987313_105991192
ENSMUSG00000031887.14_10	chr8	-	903	3	NIC	ENSMUSG00000031887.14	novel	386	4	NA	NA	2	-285	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	24.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCGGAGATGCTGAGGT	535	False	NA	-8	True	AATAAA	-18	NA	105991211	105985202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_105985928_105987153_105987313_105991192
ENSMUSG00000031887.14_11	chr8	-	1618	1	Genic_Genomic	ENSMUSG00000031887.14	novel	NA	NA	NA	NA	1458	1241	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTCCCAAGTGCTAGGA	6452	False	NA	NA	False	NA	NA	NA	105985294	105983676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_105983700_105985300
ENSMUSG00000031887.14_3	chr8	-	1345	4	ISM	ENSMUSG00000031887.14	ENSMUST00000034359.10	1689	5	3935	289	-554	-289	3prime_fragment	FALSE	canonical	3	66	junction_1	4.96655480858378	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACTTGCGGAGATGCTG	4440	False	NA	-12	True	AATAAA	-14	NA	105987306	105985206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_105985928_105986068_105986262_105986341_105986620_105987153
ENSMUSG00000031887.14_4	chr8	-	1000	3	FSM	ENSMUSG00000031887.14	ENSMUST00000136239.2	710	3	327	-617	327	-287	multi-exon	FALSE	canonical	3	66	junction_1	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGCGGAGATGCTGAG	5321	False	NA	-10	True	AATAAA	-16	NA	105986425	105985204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_105985928_105986068_105986262_105986341
ENSMUSG00000031887.14_5	chr8	-	1984	3	NIC	ENSMUSG00000031887.14	novel	386	4	NA	NA	2	-289	intron_retention	FALSE	canonical	3	50	junction_2	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACTTGCGGAGATGCTG	535	False	NA	-12	True	AATAAA	-14	NA	105991211	105985206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_105985928_105986068_105987313_105991192
ENSMUSG00000031887.14_6	chr8	-	1627	4	NIC	ENSMUSG00000031887.14	novel	386	4	NA	NA	2	-289	intron_retention	FALSE	canonical	2	3	junction_2	26.7374061735406	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACTTGCGGAGATGCTG	535	False	NA	-12	True	AATAAA	-14	NA	105991211	105985206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_105985928_105986068_105986797_105987153_105987313_105991192
ENSMUSG00000031889.10_0	chr8	+	2847	16	FSM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	62	7	1	-7	multi-exon	TRUE	canonical	3	239	junction_9	14.7126551724093	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAATGTGAGCTGTTGA	NA	False	NA	NA	False	NA	NA	NA	105951838	105979678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
ENSMUSG00000031889.10_4	chr8	+	2928	16	NIC	ENSMUSG00000031889.10	novel	2916	16	NA	NA	10	-7	combination_of_known_junctions	FALSE	canonical	3	12	junction_12	66.0092922751537	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAATGTGAGCTGTTGA	NA	False	NA	NA	False	NA	NA	NA	105951847	105979678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105975960_105976095_105976228_105976288_105977350_105977424_105978229
ENSMUSG00000031897.10_0	chr8	-	550	3	FSM	ENSMUSG00000031897.10	ENSMUST00000212938.2	646	3	96	0	94	0	multi-exon	FALSE	canonical	3	246	junction_1	9	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAACACTTAAACAGAAGG	NA	False	NA	-16	True	AATAAA	-11	NA	106663563	106662375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106662538_106662627_106662780_106663327
ENSMUSG00000031897.10_1	chr8	-	447	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212686.2	554	4	105	2	92	1	multi-exon	FALSE	canonical	3	157	junction_3	46.7784375778224	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAAACAGAAGGCTGTGT	NA	False	NA	-10	True	AATAAA	-17	NA	106663565	106662369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497
ENSMUSG00000031897.10_2	chr8	-	433	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212332.2	426	4	-8	1	5	0	multi-exon	FALSE	canonical	3	7	junction_3	117.139043685509	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACAGAAGGCTGTGTCT	NA	False	NA	-8	True	AATAAA	-19	NA	106663665	106662367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663613
ENSMUSG00000031897.10_4	chr8	-	775	7	ISM	ENSMUSG00000031897.10	ENSMUST00000034369.10	1311	8	715	9	-64	-4	3prime_fragment	FALSE	canonical	1	4	junction_6	111.914774121501	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACACAAACACTTAAACAG	NA	False	NA	-20	True	AATAAA	-7	NA	106664361	106662379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497_106663614_106663872_106664014_106664125_106664224_106664310
ENSMUSG00000031897.10_5	chr8	-	954	8	FSM	ENSMUSG00000031897.10	ENSMUST00000034369.10	1311	8	362	-5	10	1	multi-exon	FALSE	canonical	1	3	junction_7	110.839468399582	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGAAGGCTGTGTCTTT	NA	False	NA	-6	True	AATAAA	-21	NA	106664714	106662365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497_106663614_106663872_106664014_106664125_106664224_106664310_106664399_106664586
ENSMUSG00000031898.10_0	chr8	-	1691	10	FSM	ENSMUSG00000031898.10	ENSMUST00000034371.9	1698	10	-7	14	-7	-14	multi-exon	FALSE	canonical	3	28	junction_5	8.79955105476592	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATCACGCCAAGTGTCT	NA	False	NA	-13	True	AATAAA	-7	NA	106706068	106700158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705471_106705645
ENSMUSG00000031898.10_1	chr8	-	1794	10	NNC	ENSMUSG00000031898.10	novel	1698	10	NA	NA	-16	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	15.663120165961	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCCAAGTGTCTGAGCCCT	NA	False	NA	-6	True	AATAAA	-14	NA	106706077	106700151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705558_106705645
ENSMUSG00000031901.13_0	chr8	+	1860	16	FSM	ENSMUSG00000031901.13	ENSMUST00000034375.11	1860	16	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_9	22.4047613987146	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCACCTGCTTCAACCT	NA	False	NA	12	True	AATAAA	-12	NA	106738138	106780451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
ENSMUSG00000031901.13_1	chr8	+	1822	15	FSM	ENSMUSG00000031901.13	ENSMUST00000119736.8	1837	15	-6	21	-6	0	multi-exon	TRUE	canonical	3	13	junction_4	52.5452186216786	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCACCTGCTTCAACCT	NA	False	NA	12	True	AATAAA	-12	NA	106738132	106780451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
ENSMUSG00000031902.11_1	chr8	+	6005	10	FSM	ENSMUSG00000031902.11	ENSMUST00000109308.3	5984	10	-30	9	-30	-9	multi-exon	FALSE	canonical	3	195	junction_8	15.9706520967386	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACAGTCTCCTTGAAATC	NA	False	NA	0	True	AATAAA	-11	NA	106786234	106857160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106786626_106805235_106806374_106810442_106810606_106818663_106818864_106822795_106822969_106825703_106825845_106827565_106827622_106830656_106830784_106834756_106835762_106854549
ENSMUSG00000031902.11_17	chr8	+	5100	9	ISM	ENSMUSG00000031902.11	ENSMUST00000109308.3	5984	10	19487	7	-16055	-7	3prime_fragment	FALSE	canonical	3	195	junction_7	16.6864465959652	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTCCTTGAAATCTG	NA	False	NA	2	True	AATAAA	-13	NA	106805751	106857162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106806374_106810442_106810606_106818663_106818864_106822795_106822969_106825703_106825845_106827565_106827622_106830656_106830784_106834756_106835762_106854549
ENSMUSG00000031902.11_2	chr8	+	6106	11	NIC	ENSMUSG00000031902.11	novel	5984	10	NA	NA	-25	-7	combination_of_known_junctions	FALSE	canonical	3	26	junction_9	78.5147119971792	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTCCTTGAAATCTG	NA	False	NA	2	True	AATAAA	-13	NA	106786239	106857162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106786626_106805235_106806374_106810442_106810606_106818663_106818864_106822795_106822969_106825703_106825845_106827565_106827622_106830656_106830784_106834756_106835762_106845953_106846058_106854549
ENSMUSG00000031902.11_24	chr8	+	3319	2	ISM	ENSMUSG00000031902.11	ENSMUST00000109308.3	5984	10	48791	7	9659	-7	3prime_fragment	FALSE	canonical	3	207	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTCCTTGAAATCTG	NA	False	NA	2	True	AATAAA	-13	NA	106835055	106857162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106835762_106854549
ENSMUSG00000031902.11_25	chr8	+	1890	1	ISM	ENSMUSG00000031902.11	ENSMUST00000109308.3	5984	10	69008	7	29876	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTCCTTGAAATCTG	NA	False	NA	2	True	AATAAA	-13	NA	106855272	106857162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106855300_106857200
ENSMUSG00000031903.8_0	chr8	+	2718	6	FSM	ENSMUSG00000031903.8	ENSMUST00000034377.8	2706	6	-15	3	-15	0	multi-exon	FALSE	canonical	3	107	junction_2	8.49941174435031	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGGTGCCTTGTCCTGCTC	6182	False	NA	11	True	AATAAA	-17	NA	106877015	106891344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887715_106887941_106889456
ENSMUSG00000031903.8_2	chr8	+	2593	6	FSM	ENSMUSG00000031903.8	ENSMUST00000212963.2	2578	6	-15	0	-15	0	multi-exon	FALSE	canonical	1	1	junction_4	47.4088599314516	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGGTGCCTTGTCCTGCTC	6182	False	NA	11	True	AATAAA	-17	NA	106877015	106891344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887840_106887941_106889456
ENSMUSG00000031903.8_7	chr8	+	1458	1	ISM	ENSMUSG00000031903.8	ENSMUST00000212963.2	2578	6	12855	1	4751	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGGTGCCTTGTCCTGCT	NA	False	NA	10	True	AATAAA	-16	NA	106889885	106891343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106889900_106891300
ENSMUSG00000031904.6_13	chr8	+	1915	10	NIC	ENSMUSG00000031904.6	novel	3750	10	NA	NA	27	-762	intron_retention	FALSE	canonical	3	12	junction_1	155.192671966491	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGGGCTCAGGGCCAATG	1888	False	NA	10	True	ATTAAA	-25	NA	106895544	106923377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106895769_106905733_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
ENSMUSG00000031904.6_18	chr8	+	2222	7	ISM	ENSMUSG00000031904.6	ENSMUST00000212377.2	2672	11	23518	-170	14042	170	3prime_fragment	FALSE	canonical	3	50	junction_4	156.740408177201	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGCAAGAGGCCTGGAAT	1394	False	NA	5	True	AATAAA	-20	NA	106919024	106924647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
ENSMUSG00000031904.6_19	chr8	+	1705	3	ISM	ENSMUSG00000031904.6	ENSMUST00000212377.2	2672	11	26594	-176	17118	176	3prime_fragment	FALSE	canonical	3	51	junction_1	4.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGCCTGGAATGTTCTA	4470	False	NA	11	True	AATAAA	-26	NA	106922100	106924653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106922144_106922484_106922669_106923175
ENSMUSG00000031904.6_20	chr8	+	2208	2	ISM	ENSMUSG00000031904.6	ENSMUST00000034378.5	3750	10	27128	7	17634	-7	3prime_fragment	FALSE	canonical	3	60	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTAATCACAGTTGCCAT	4986	False	NA	-3	True	AATAAA	-11	NA	106922616	106925331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106922669_106923175
ENSMUSG00000031904.6_21	chr8	+	3157	1	Genic_Genomic	ENSMUSG00000031904.6	novel	NA	NA	NA	NA	18957	1758	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATCATCACATTCATAC	6309	False	NA	NA	False	AAAAAG	-38	NA	106923939	106927096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_106923900_106927100
ENSMUSG00000031904.6_4	chr8	+	3030	10	FSM	ENSMUSG00000031904.6	ENSMUST00000034378.5	3750	10	29	691	0	170	multi-exon	FALSE	canonical	3	50	junction_7	138.200159010825	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGCAAGAGGCCTGGAAT	1861	False	NA	5	True	AATAAA	-20	NA	106895517	106924647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106895587_106905733_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
ENSMUSG00000031904.6_7	chr8	+	2437	9	FSM	ENSMUSG00000031904.6	ENSMUST00000213020.2	3200	9	8	755	-3	-755	multi-exon	FALSE	canonical	3	50	junction_6	138.341911129636	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGCCAATGCTCTCTC	1858	False	NA	17	True	ATTAAA	-32	NA	106895514	106923384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106895587_106905733_106906293_106916248_106916375_106918970_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
ENSMUSG00000031907.10_0	chr8	+	2292	5	FSM	ENSMUSG00000031907.10	ENSMUST00000212874.2	2195	5	-99	2	-27	-1	multi-exon	FALSE	canonical	2	3	junction_1	7.8541390362025	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACAGGCTTCTTGTAGA	NA	False	NA	NA	False	ATTAAA	-18	NA	107141931	107152359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_107142119_107142335_107142403_107145702_107145830_107146146_107146243_107150544
ENSMUSG00000031907.10_2	chr8	+	2462	4	FSM	ENSMUSG00000031907.10	ENSMUST00000034382.8	2632	4	9	161	0	0	multi-exon	FALSE	canonical	2	13	junction_1	5.09901951359278	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACAGGCTTCTTGTAGAA	NA	False	NA	NA	False	ATTAAA	-19	NA	107141979	107152360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_107142403_107145702_107145830_107146146_107146243_107150544
ENSMUSG00000031907.10_3	chr8	+	2594	4	FSM	ENSMUSG00000031907.10	ENSMUST00000213045.2	3447	4	-24	877	-24	-7	multi-exon	FALSE	canonical	2	7	junction_2	7.48331477354788	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTTATTACAGGCTTCT	NA	False	NA	NA	False	ATTAAA	-12	NA	107141934	107152353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_107142403_107145702_107145830_107146052_107146243_107150544
ENSMUSG00000031907.10_5	chr8	+	5529	3	NIC	ENSMUSG00000031907.10	novel	2639	4	NA	NA	274	-2	intron_retention	FALSE	canonical	2	7	junction_1	9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTACAGGCTTCTTGTAG	NA	False	NA	NA	False	ATTAAA	-17	NA	107142304	107152358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_107145830_107146052_107146243_107150544
ENSMUSG00000031907.10_6	chr8	+	4283	3	ISM	ENSMUSG00000031907.10	ENSMUST00000212874.2	2195	5	1423	6	1423	-5	3prime_fragment	FALSE	canonical	2	16	junction_1	4.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTATTACAGGCTTCTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	107143453	107152355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107145830_107146146_107146243_107150544
ENSMUSG00000031907.10_7	chr8	+	1696	1	ISM	ENSMUSG00000031907.10	ENSMUST00000213045.2	3447	4	8706	870	8634	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACAGGCTTCTTGTAGAA	9	True	NA	NA	False	ATTAAA	-19	NA	107150664	107152360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107150700_107152400
ENSMUSG00000031910.15_0	chr8	+	3244	1	ISM	ENSMUSG00000031910.15	ENSMUST00000034385.12	5912	4	9399	18	8750	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCTGGCGTGTCCATTGC	NA	False	NA	NA	False	AATAAA	-12	NA	107606272	107609516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107606300_107609500
ENSMUSG00000031913.10_0	chr8	+	2075	11	FSM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	99	4	99	-4	multi-exon	FALSE	canonical	3	173	junction_10	19.6532440070335	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAGCTACTGGAGTCGTC	NA	False	NA	13	True	AATAAA	-13	NA	107757952	107772383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_107758124_107763268_107763381_107763474_107763623_107765559_107765622_107765721_107765842_107767505_107767663_107768823_107768973_107769245_107769328_107769543_107769764_107771086_107771228_107771670
ENSMUSG00000031916.18_1	chr8	-	2948	6	FSM	ENSMUSG00000031916.18	ENSMUST00000034391.4	2954	6	2	4	2	-4	multi-exon	FALSE	canonical	3	27	junction_1	47.5116827738189	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACAAAGCTTCTACTG	NA	False	NA	NA	False	NA	NA	NA	107783314	107772930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107773904_107775414_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
ENSMUSG00000031916.18_2	chr8	-	2925	6	NNC	ENSMUSG00000031916.18	novel	2954	6	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	49.4748420917136	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACAAAGCTTCTACTG	NA	False	NA	NA	False	NA	NA	NA	107783314	107772930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_107773904_107775437_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
ENSMUSG00000031916.18_4	chr8	-	3677	6	NIC	ENSMUSG00000031916.18	novel	2954	6	NA	NA	0	-4	combination_of_known_splicesites	FALSE	canonical	3	128	junction_5	53.4093624751316	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACAAAGCTTCTACTG	NA	False	NA	NA	False	NA	NA	NA	107783321	107772930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_107773904_107774692_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
ENSMUSG00000031916.18_5	chr8	-	2049	5	FSM	ENSMUSG00000031916.18	ENSMUST00000095517.12	4476	5	7	2420	2	-2414	multi-exon	FALSE	canonical	3	128	junction_4	10.356157588604	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTCGCCTGCTGTTCCC	NA	False	NA	-6	True	AATAAA	-14	NA	107783314	107775340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
ENSMUSG00000031917.13_0	chr8	+	1112	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	24	1900	0	365	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTTATTTCATATGTGT	NA	False	NA	22	True	AATAAA	-16	NA	107783532	107785663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
ENSMUSG00000031917.13_1	chr8	+	1915	6	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	320.893377931051	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTTGTCTCCGTATCA	NA	False	NA	14	True	ATTAAA	-15	NA	107783532	107787558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008_107785997_107787088
ENSMUSG00000031917.13_7	chr8	+	1212	4	NIC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	-1	371	intron_retention	FALSE	canonical	3	714	junction_3	58.9594964549581	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCATATGTGTGAGTGT	NA	False	NA	28	True	AATAAA	-22	NA	107783531	107785669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_107783623_107783724_107784044_107784678_107784820_107785008
ENSMUSG00000031918.17_0	chr9	+	3010	15	FSM	ENSMUSG00000031918.17	ENSMUST00000034396.14	3788	15	776	2	1	-1	multi-exon	FALSE	canonical	3	316	junction_2	44.4939803312121	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGTCCACAGTTGTC	NA	False	NA	25	True	ATTAAA	-14	NA	13660481	13717775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_13660697_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
ENSMUSG00000031918.17_1	chr9	+	3081	16	FSM	ENSMUSG00000031918.17	ENSMUST00000155679.8	3088	16	5	2	1	-1	multi-exon	FALSE	canonical	3	129	junction_2	100.813138473559	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGTCCACAGTTGTC	NA	False	NA	25	True	ATTAAA	-14	NA	13660481	13717775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_13660697_13671713_13671785_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
ENSMUSG00000031918.17_2	chr9	+	3115	16	FSM	ENSMUSG00000031918.17	ENSMUST00000134674.8	3106	16	-11	2	1	-1	multi-exon	FALSE	canonical	3	121	junction_3	100.823057327622	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGTCCACAGTTGTC	NA	False	NA	25	True	ATTAAA	-14	NA	13660481	13717775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_13660697_13693572_13693679_13694901_13695007_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
ENSMUSG00000031918.17_6	chr9	+	3185	17	NIC	ENSMUSG00000031918.17	novel	3106	16	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	121	junction_4	125.44469336624	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGTCCACAGTTGTC	NA	False	NA	25	True	ATTAAA	-14	NA	13660482	13717775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_13660697_13671713_13671785_13693572_13693679_13694901_13695007_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
ENSMUSG00000031921.18_1	chr8	-	398	1	ISM	ENSMUSG00000031921.18	ENSMUST00000133925.8	2666	10	26746	2	10076	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTCTCTAGCTGGTTCT	NA	False	NA	-2	True	ATTAAA	-15	NA	107796431	107796033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_107796000_107796400
ENSMUSG00000031921.18_10	chr8	-	2526	10	FSM	ENSMUSG00000031921.18	ENSMUST00000068421.13	2667	10	139	2	108	-2	multi-exon	FALSE	canonical	3	17	junction_3	7.27247474309048	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTTCTCTAGCTGGTT	NA	False	NA	-4	True	ATTAAA	-13	NA	107823038	107796035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107797198_107798506_107798548_107799191_107799278_107803241_107803632_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
ENSMUSG00000031921.18_11	chr8	-	2629	3	ISM	ENSMUSG00000031921.18	ENSMUST00000142616.8	2140	11	22205	2	5890	-2	3prime_fragment	FALSE	canonical	3	30	junction_2	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTTCTCTAGCTGGTT	NA	False	NA	-4	True	ATTAAA	-13	NA	107800617	107796035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_107797198_107798506_107798548_107799191
ENSMUSG00000031921.18_12	chr8	-	2048	8	ISM	ENSMUSG00000031921.18	ENSMUST00000068421.13	2667	10	1692	0	1337	0	3prime_fragment	FALSE	canonical	3	17	junction_3	8.06605383628177	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTCTCTAGCTGGTTCT	NA	False	NA	-2	True	ATTAAA	-15	NA	107821485	107796033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_107797198_107798506_107798548_107799191_107799278_107803241_107803632_107806000_107806102_107807724_107807872_107809614_107809702_107821453
ENSMUSG00000031921.18_13	chr8	-	1570	7	ISM	ENSMUSG00000031921.18	ENSMUST00000068388.15	1915	11	117	6337	117	54	5prime_fragment	FALSE	canonical	3	17	junction_1	8.76387788342327	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTTAGCTTTATACCTT	NA	False	NA	4	True	NA	NA	NA	107823029	107802896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_107803629_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
ENSMUSG00000031921.18_14	chr8	-	431	1	ISM	ENSMUSG00000031921.18	ENSMUST00000116425.3	2471	7	19982	618	3310	184	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCAGCCTGGGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	107803197	107802766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_107802800_107803200
ENSMUSG00000031921.18_16	chr8	-	1518	7	FSM	ENSMUSG00000031921.18	ENSMUST00000116425.3	2471	7	151	802	118	0	multi-exon	FALSE	canonical	3	29	junction_6	4.88762609953839	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATTTGTCTGAAGTTGGG	NA	False	NA	-12	True	NA	NA	NA	107823028	107802950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107803632_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
ENSMUSG00000031921.18_24	chr8	-	1546	2	FSM	ENSMUSG00000031921.18	ENSMUST00000141205.2	1188	2	443	-801	443	-1	multi-exon	FALSE	canonical	3	32	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTTGTCCTTGCGTGAT	NA	False	NA	0	True	NA	NA	NA	107806064	107802149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107803632_107806000
ENSMUSG00000031921.18_4	chr8	-	2510	10	FSM	ENSMUSG00000031921.18	ENSMUST00000133925.8	2666	10	154	2	123	0	multi-exon	FALSE	canonical	3	17	junction_3	8.85688683705762	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTCTCTAGCTGGTTCT	NA	False	NA	-2	True	ATTAAA	-15	NA	107823023	107796033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107797198_107798506_107798548_107799191_107799278_107803241_107803629_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
ENSMUSG00000031922.13_0	chr9	-	518	1	ISM	ENSMUSG00000031922.13	ENSMUST00000142494.8	2173	10	18675	7	2098	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGCCAGCTAACAAAGGC	NA	False	NA	NA	False	AATAAA	-21	NA	13719612	13719094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_13719100_13719600
ENSMUSG00000031922.13_2	chr9	-	2482	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	36	5	-18	-4	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGCCAGCTAACAAAGGC	NA	False	NA	NA	False	AATAAA	-21	NA	13738367	13719094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
ENSMUSG00000031922.13_5	chr9	-	2412	10	FSM	ENSMUSG00000031922.13	ENSMUST00000147115.8	2262	10	-124	-26	-26	-4	multi-exon	FALSE	canonical	3	58	junction_3	63.5314639653475	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGCCAGCTAACAAAGGC	NA	False	NA	NA	False	AATAAA	-21	NA	13738375	13719094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
ENSMUSG00000031924.5_0	chr8	+	4286	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	14	16	14	-16	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	1600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCTTGTCCTGACTAC	NA	False	NA	1	True	AATAAA	-12	NA	107877285	107914087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
ENSMUSG00000031924.5_19	chr8	+	2851	1	ISM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	33971	10	18696	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTGACTACGGTTGC	NA	False	NA	7	True	AATAAA	-18	NA	107911242	107914093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107911200_107914100
ENSMUSG00000031925.18_0	chr9	+	2979	3	NNC	ENSMUSG00000031925.18	novel	6404	5	NA	NA	39507	958	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	1	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATTTTATACAAAAAGTAA	NA	False	NA	NA	False	AATAAA	-18	NA	13613262	13619599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_13613418_13613539_13613652_13616887
ENSMUSG00000031925.18_3	chr9	+	3385	1	Genic_Genomic	ENSMUSG00000031925.18	novel	NA	NA	NA	NA	43550	6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCAGAAGTGGTTTTC	NA	False	NA	NA	False	TTTAAA	-1	NA	13617305	13620690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_+_13617300_13620700
ENSMUSG00000031928.16_0	chr9	+	2563	20	FSM	ENSMUSG00000031928.16	ENSMUST00000034405.11	3286	20	37	686	-11	-686	multi-exon	TRUE	canonical	3	154	junction_1	46.9081733954962	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCCCTCCGTTGTTCAT	NA	False	NA	13	True	NA	NA	NA	14695986	14745256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
ENSMUSG00000031928.16_6	chr9	+	2559	20	NIC	ENSMUSG00000031928.16	novel	3286	20	NA	NA	43	-686	combination_of_known_junctions	FALSE	canonical	3	118	junction_1	53.5567113407824	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCCCTCCGTTGTTCAT	NA	False	NA	13	True	NA	NA	NA	14696040	14745256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_14696104_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
ENSMUSG00000031928.16_65	chr9	+	2679	1	ISM	ENSMUSG00000031928.16	ENSMUST00000115632.10	5660	19	49763	6	37273	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGAATTTTGAACGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	14745734	14748413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_14745700_14748400
ENSMUSG00000031930.12_0	chr8	+	2901	24	FSM	ENSMUSG00000031930.12	ENSMUST00000166615.3	4314	24	29	1384	5	-1	multi-exon	FALSE	canonical	3	576	junction_9	55.7196601685668	1354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACCTGTTGCAAAGCCA	NA	False	NA	9	True	AATAAA	-20	NA	108163025	108283843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
ENSMUSG00000031930.12_53	chr8	+	2857	23	ISM	ENSMUSG00000031930.12	ENSMUST00000166615.3	4314	24	16610	1384	16559	-1	3prime_fragment	FALSE	canonical	3	576	junction_8	56.7776582762872	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACCTGTTGCAAAGCCA	NA	False	NA	9	True	AATAAA	-20	NA	108179606	108283843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
ENSMUSG00000031931.5_0	chr9	-	2169	2	FSM	ENSMUSG00000031931.5	ENSMUST00000034406.4	1753	2	0	-416	0	-6	multi-exon	FALSE	canonical	3	189	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCCAAGAACCAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	14694260	14691088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_14692908_14693910
ENSMUSG00000031931.5_1	chr9	-	3178	1	FSM	ENSMUSG00000031931.5	ENSMUST00000214882.2	1633	1	1534	-3079	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14694260	14691082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_14691100_14694300
ENSMUSG00000031931.5_2	chr9	-	2230	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216037.2	1037	3	7	-1200	3	-2	multi-exon	FALSE	canonical	3	83	junction_2	53	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGAACCAGTGTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	14695815	14691084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_14692908_14693910_14694259_14695756
ENSMUSG00000031931.5_3	chr9	-	2200	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	310	169	4	0	multi-exon	FALSE	canonical	3	72	junction_2	58.5	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14695842	14691082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_14692908_14693910_14694259_14695815
ENSMUSG00000031931.5_5	chr9	-	2436	3	NIC	ENSMUSG00000031931.5	novel	2679	3	NA	NA	10	-10	combination_of_known_junctions	FALSE	canonical	3	16	junction_2	86.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAGCCAAGAACCAGT	NA	False	NA	NA	False	NA	NA	NA	14695808	14691092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_14692908_14693910_14694259_14695535
ENSMUSG00000031932.15_0	chr9	+	2239	4	FSM	ENSMUSG00000031932.15	ENSMUST00000034408.12	3586	4	-129	1476	-129	-997	multi-exon	FALSE	canonical	2	2	junction_2	1.63299316185545	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGGAAAAAAGAAAA	NA	False	NA	NA	False	AGTAAA	-26	NA	14771376	14780609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_14772217_14776067_14776194_14778144_14778279_14779470
ENSMUSG00000031934.15_0	chr9	-	2051	5	FSM	ENSMUSG00000031934.15	ENSMUST00000164273.9	5732	5	16	3665	16	-8	multi-exon	FALSE	canonical	3	51	junction_1	8.13557004763649	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTAATGACACCCTCTG	NA	False	NA	-12	True	AATAAA	-13	NA	14956758	14917088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_14917514_14918656_14919316_14921331_14921553_14932677_14932818_14956152
ENSMUSG00000031934.15_2	chr9	-	649	2	ISM	ENSMUSG00000031934.15	ENSMUST00000056755.8	1854	4	37900	2	2930	-2	3prime_fragment	FALSE	canonical	3	51	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGACACCCTCTGTGCCCT	NA	False	NA	-6	True	AATAAA	-19	NA	14918874	14917082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_14917514_14918656
ENSMUSG00000031934.15_3	chr9	-	1490	5	NIC	ENSMUSG00000031934.15	novel	5732	5	NA	NA	5	-4	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	28.0223125384041	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGACACCCTCTGTGCC	NA	False	NA	-8	True	AATAAA	-17	NA	14955088	14917084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_14917514_14918656_14919316_14921331_14921553_14932677_14932818_14955047
ENSMUSG00000031935.10_0	chr9	-	2423	12	FSM	ENSMUSG00000031935.10	ENSMUST00000034411.10	3964	12	16	1525	-12	131	multi-exon	TRUE	canonical	3	139	junction_7	15.3563726777577	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATCTCCCCAAGTAT	NA	False	NA	-11	True	CATAAA	-11	NA	15191211	15173171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15190845
ENSMUSG00000031937.8_0	chr9	+	1923	4	FSM	ENSMUSG00000031937.8	ENSMUST00000034413.8	1991	4	45	23	45	-23	multi-exon	FALSE	canonical	3	5	junction_3	3.68178700572909	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAAATTTAAAAATT	NA	False	NA	NA	False	NA	NA	NA	15150385	15170689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_15150655_15168525_15168853_15168946_15169088_15169503
ENSMUSG00000031937.8_6	chr9	+	3373	1	NIC	ENSMUSG00000031937.8	novel	1991	4	NA	NA	16976	-23	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAAATTTAAAAATT	NA	False	NA	NA	False	NA	NA	NA	15167316	15170689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_15167300_15170700
ENSMUSG00000031938.16_0	chr9	-	2618	9	FSM	ENSMUSG00000031938.16	ENSMUST00000178977.9	2650	9	31	1	1	-1	multi-exon	FALSE	canonical	3	15	junction_1	3.64005494464026	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTTTTCTTTTCTTT	NA	False	NA	-8	True	AATAAA	-14	NA	15217432	15194635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_15196288_15198651_15198769_15201962_15202113_15203295_15203473_15205727_15205830_15205981_15206056_15209138_15209238_15212662_15212810_15217332
ENSMUSG00000031938.16_1	chr9	-	1352	1	ISM	ENSMUSG00000031938.16	ENSMUST00000180339.8	2756	9	21751	9	4871	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATACTGTTTTTTTTTTCTT	NA	False	NA	-14	True	AATAAA	-8	NA	15195993	15194641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_15194600_15196000
ENSMUSG00000031938.16_14	chr9	-	2464	8	FSM	ENSMUSG00000031938.16	ENSMUST00000034414.10	2562	8	91	7	49	-7	multi-exon	FALSE	canonical	3	15	junction_1	3.8703477668983	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATACTGTTTTTTTTTTCTT	NA	False	NA	-14	True	AATAAA	-8	NA	15212761	15194641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_15196288_15198651_15198769_15201962_15202113_15203295_15203473_15205727_15205830_15205981_15206056_15209138_15209238_15212662
ENSMUSG00000031938.16_5	chr9	-	1274	1	FSM	ENSMUSG00000031938.16	ENSMUST00000215741.2	3504	1	1	2229	1	-2229	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGTCTGTCATGGATTT	NA	False	NA	NA	False	NA	NA	NA	15217432	15216158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_15216200_15217400
ENSMUSG00000031938.16_7	chr9	-	2521	8	FSM	ENSMUSG00000031938.16	ENSMUST00000216955.2	1750	8	-5	-766	2	0	multi-exon	FALSE	canonical	2	2	junction_6	7.40104791256493	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTCTTTTCTTTCAT	NA	False	NA	-5	True	AATAAA	-17	NA	15217431	15194632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_15196288_15198651_15198769_15201962_15202113_15203295_15203473_15205727_15205830_15205981_15206056_15212662_15212810_15217332
ENSMUSG00000031939.17_1	chr9	+	1208	12	FSM	ENSMUSG00000031939.17	ENSMUST00000213763.2	1216	12	1	7	1	-7	multi-exon	FALSE	canonical	3	217	junction_9	145.029663537447	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAGTAAAAAGAACCTTT	9119	False	NA	-8	True	NA	NA	NA	15217556	15228259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ENSMUSG00000031939.17_100	chr9	+	679	1	FSM	ENSMUSG00000065663.3	ENSMUST00000083729.3	133	1	-407	-139	-407	139	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATAAATATATAC	NA	False	NA	-24	True	NA	NA	NA	15227564	15228243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_15227600_15228200
ENSMUSG00000031939.17_3	chr9	+	2357	11	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	1	-11	intron_retention	FALSE	canonical	3	217	junction_8	148.387634255689	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATATACAGTAAAAAGAAC	9119	False	NA	-12	True	NA	NA	NA	15217556	15228255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ENSMUSG00000031939.17_47	chr9	+	1210	8	NIC	ENSMUSG00000031939.17	novel	1148	7	NA	NA	-1	-7	combination_of_known_junctions	FALSE	canonical	3	55	junction_7	233.748163803767	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCCAGCCTCTTAAGTG	9121	False	NA	-2	True	AATAAA	-9	NA	15217558	15223393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223204
ENSMUSG00000031939.17_5	chr9	+	1328	13	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	69	junction_1	171.959055204042	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGTAAAAAGAACCTTTTA	9119	False	NA	-6	True	NA	NA	NA	15217556	15228261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ENSMUSG00000031939.17_6	chr9	+	1423	7	NIC	ENSMUSG00000031939.17	novel	1148	7	NA	NA	1	-9	intron_retention	FALSE	canonical	3	69	junction_1	217.881275010038	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAACCCAGCCTCTTAAG	9119	False	NA	-4	True	AATAAA	-7	NA	15217556	15223391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ENSMUSG00000031939.17_70	chr9	+	986	5	ISM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	1462	1	0	-1	3prime_fragment	FALSE	canonical	3	506	junction_1	28.7793328623163	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCGTTGCTTGATTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	15219021	15223093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ENSMUSG00000031939.17_9	chr9	+	1305	6	FSM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	-3	-297	1	-9	multi-exon	FALSE	canonical	3	288	junction_1	106.167791726116	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAACCCAGCCTCTTAAG	9119	False	NA	-4	True	AATAAA	-7	NA	15217556	15223391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ENSMUSG00000031948.15_1	chr8	-	1971	14	FSM	ENSMUSG00000031948.15	ENSMUST00000034426.14	2008	14	36	1	10	-1	multi-exon	FALSE	canonical	3	1149	junction_10	189.523538373557	1238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGCAGTGTTACTTTT	NA	False	NA	-5	True	AATAAA	-15	NA	112737919	112720075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
ENSMUSG00000031948.15_5	chr8	-	2147	15	FSM	ENSMUSG00000031948.15	ENSMUST00000093120.13	2131	15	-17	1	-8	-1	multi-exon	FALSE	canonical	3	198	junction_14	463.92143951408	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGCAGTGTTACTTTT	NA	False	NA	-5	True	AATAAA	-15	NA	112737915	112720075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112737841
ENSMUSG00000031948.15_6	chr8	-	2198	16	FSM	ENSMUSG00000031948.15	ENSMUST00000164470.3	2189	16	-10	1	-1	-1	multi-exon	FALSE	canonical	3	76	junction_15	556.875793053432	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGCAGTGTTACTTTT	NA	False	NA	-5	True	AATAAA	-15	NA	112737908	112720075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112735113_112735172_112737841
ENSMUSG00000031949.18_1	chr8	-	3074	10	FSM	ENSMUSG00000031949.18	ENSMUST00000034427.12	3159	10	32	53	32	-53	multi-exon	FALSE	canonical	3	33	junction_1	12.5521135891752	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCAGTGTTCTTTTATGAG	NA	False	NA	-63	True	NA	NA	NA	112718902	112693592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112695177_112698736_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
ENSMUSG00000031949.18_11	chr8	-	2016	9	NNC	ENSMUSG00000031949.18	novel	2762	9	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_8	15.189943219117	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGCATAGTCTCTGTCC	NA	False	NA	NA	False	AATAAA	-22	NA	112718901	112698184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717020_112718812
ENSMUSG00000031949.18_13	chr8	-	2043	9	FSM	ENSMUSG00000031949.18	ENSMUST00000139820.8	2762	9	31	688	31	0	multi-exon	FALSE	canonical	3	40	junction_8	9.81070843517429	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGCATAGTCTCTGTCC	NA	False	NA	NA	False	AATAAA	-22	NA	112718903	112698184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
ENSMUSG00000031949.18_2	chr8	-	3092	10	NNC	ENSMUSG00000031949.18	novel	3159	10	NA	NA	35	-7	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_9	16.2784413971666	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTGAAGTAGTAACATT	NA	False	NA	-17	True	TATAAA	-11	NA	112718899	112693546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_112695177_112698736_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717020_112718812
ENSMUSG00000031950.8_0	chr8	+	959	4	FSM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	20	698	20	172	multi-exon	FALSE	canonical	3	2738	junction_1	80.3838015744189	993	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACGGTGTGACCATGTCC	NA	False	NA	NA	False	AATAAA	-17	NA	112667354	112679546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946
ENSMUSG00000031951.9_0	chr8	-	3267	6	NIC	ENSMUSG00000031951.9	novel	2984	7	NA	NA	7	-7	intron_retention	FALSE	canonical	3	257	junction_2	4.66476151587624	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAACGTTTCCCTTGGC	NA	False	NA	-11	True	ATTAAA	-8	NA	112660424	112638649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660162_112660259
ENSMUSG00000031951.9_1	chr8	-	1692	1	ISM	ENSMUSG00000031951.9	ENSMUST00000034429.9	2984	7	20172	7	14451	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAACGTTTCCCTTGGC	NA	False	NA	-11	True	ATTAAA	-8	NA	112640341	112638649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_112638600_112640300
ENSMUSG00000031951.9_2	chr8	-	2886	7	FSM	ENSMUSG00000031951.9	ENSMUST00000034429.9	2984	7	91	7	9	-7	multi-exon	FALSE	canonical	3	251	junction_1	6.79256129077161	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAACGTTTCCCTTGGC	NA	False	NA	-11	True	ATTAAA	-8	NA	112660422	112638649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660162_112660259
ENSMUSG00000031953.3_0	chr8	-	3838	3	FSM	ENSMUSG00000031953.3	ENSMUST00000034431.3	3878	3	32	8	32	-8	multi-exon	FALSE	canonical	3	19	junction_1	7	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTAAATTCTTTGCGTTG	NA	False	NA	-13	True	AATAAA	-6	NA	112603350	112589677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112593129_112596219_112596391_112603134
ENSMUSG00000031953.3_1	chr8	-	3607	2	ISM	ENSMUSG00000031953.3	ENSMUST00000034431.3	3878	3	7012	3	7012	-3	3prime_fragment	FALSE	canonical	3	19	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTTTGCGTTGGGAAC	NA	False	NA	-8	True	AATAAA	-11	NA	112596370	112589672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_112593129_112596219
ENSMUSG00000031953.3_2	chr8	-	3775	3	NNC	ENSMUSG00000031953.3	novel	3878	3	NA	NA	31	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	8.5	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTTTGCGTTGGGAAC	NA	False	NA	-8	True	AATAAA	-11	NA	112603351	112589672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_112593129_112596288_112596391_112603134
ENSMUSG00000031953.3_4	chr8	-	2433	1	ISM	ENSMUSG00000031953.3	ENSMUST00000034431.3	3878	3	11277	3	11277	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTTTGCGTTGGGAAC	NA	False	NA	-8	True	AATAAA	-11	NA	112592105	112589672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_112589700_112592100
ENSMUSG00000031954.7_0	chr8	-	1213	7	FSM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	-35	0	-35	0	multi-exon	FALSE	canonical	3	1827	junction_5	79.8013157786261	1218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGGTTGGTGAGAGTAA	NA	False	NA	-23	True	AATAAA	-15	NA	112580958	112495122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
ENSMUSG00000031955.11_0	chr8	-	3092	7	FSM	ENSMUSG00000031955.11	ENSMUST00000212349.2	3116	7	16	8	-15	-8	multi-exon	FALSE	canonical	3	127	junction_1	13.2591687354659	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGCAAAGGAGCCTAC	NA	False	NA	-13	True	AATAAA	-6	NA	112458752	112437116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112438027_112439232_112439323_112439970_112441069_112441914_112442032_112442246_112442409_112447330_112447964_112458670
ENSMUSG00000031955.11_2	chr8	-	3168	7	FSM	ENSMUSG00000031955.11	ENSMUST00000166232.4	3142	7	-37	11	-37	-8	multi-exon	FALSE	canonical	3	36	junction_6	42.5597619040959	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGCAAAGGAGCCTAC	NA	False	NA	-13	True	AATAAA	-6	NA	112470478	112437116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112438027_112439232_112439323_112439970_112441069_112441914_112442032_112442246_112442409_112447330_112447964_112470320
ENSMUSG00000031958.17_0	chr8	-	2420	7	ISM	ENSMUSG00000031958.17	ENSMUST00000070004.4	2273	11	1162	-613	-625	-155	3prime_fragment	FALSE	canonical	2	7	junction_4	3.60555127546399	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACTATATTCACTGAAAT	NA	False	NA	NA	False	ATTAAA	-39	NA	112355844	112352289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_112353823_112353909_112354022_112354119_112354211_112354730_112354859_112354941_112355071_112355152_112355353_112355617
ENSMUSG00000031959.16_20	chr8	-	3705	25	NIC	ENSMUSG00000031959.16	novel	5083	26	NA	NA	-7	-108	intron_retention	FALSE	canonical	3	54	junction_4	5.6856300344719	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGCATTCTTTTTCTTG	NA	False	NA	0	True	TATAAA	-36	NA	112248709	112176947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
ENSMUSG00000031959.16_26	chr8	-	3731	27	FSM	ENSMUSG00000031959.16	ENSMUST00000034437.8	4896	27	-30	1195	-8	-6	multi-exon	FALSE	canonical	2	3	junction_9	16.2917647181985	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTATATGTTTTCTGT	NA	False	NA	NA	False	AAGAAA	-4	NA	112248732	112176845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112199261_112199319_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
ENSMUSG00000031959.16_3	chr8	-	5046	27	NNC	ENSMUSG00000031959.16	novel	4896	27	NA	NA	-7	10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	13.3961047062859	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTAACACAGTCTGATGTC	NA	False	NA	-9	True	AGTAAA	-26	NA	112248709	112175418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_112176733_112176764_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
ENSMUSG00000031959.16_6	chr8	-	3564	26	FSM	ENSMUSG00000031959.16	ENSMUST00000038193.15	5083	26	0	1519	0	-108	multi-exon	FALSE	canonical	3	54	junction_4	5.67718239974725	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGCATTCTTTTTCTTG	NA	False	NA	0	True	TATAAA	-36	NA	112248724	112176947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
ENSMUSG00000031959.16_8	chr8	-	3560	26	NIC	ENSMUSG00000031959.16	novel	3618	27	NA	NA	1	-108	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	12.3667942491173	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGCATTCTTTTTCTTG	NA	False	NA	0	True	TATAAA	-36	NA	112248723	112176947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_112177712_112185242_112185386_112185554_112185679_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
ENSMUSG00000031959.16_9	chr8	-	1862	1	Genic_Genomic	ENSMUSG00000031959.16	novel	NA	NA	NA	NA	40100	5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTACTAACACAGTCTG	NA	False	NA	-14	True	AGTAAA	-21	NA	112177285	112175423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_112175400_112177300
ENSMUSG00000031960.15_10	chr8	+	3318	21	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	1	-2099	combination_of_known_junctions	FALSE	canonical	2	881	junction_1	574.494062197339	1916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTTGGTGATGTCATGC	NA	False	NA	12	True	AATAAA	-14	NA	111760511	111782197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ENSMUSG00000031960.15_174	chr8	+	3290	20	ISM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	3006	2099	2992	-2099	3prime_fragment	FALSE	canonical	2	2613	junction_18	264.272838112412	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTTGGTGATGTCATGC	NA	False	NA	12	True	AATAAA	-14	NA	111763539	111782197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ENSMUSG00000031960.15_55	chr8	+	3623	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	28	2099	14	-2099	multi-exon	FALSE	canonical	2	1913	junction_1	386.82599124154	4297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTTGGTGATGTCATGC	NA	False	NA	12	True	AATAAA	-14	NA	111760561	111782197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ENSMUSG00000031960.15_84	chr8	+	3317	21	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	1	-2099	combination_of_known_junctions	FALSE	canonical	2	137	junction_1	723.09724622626	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTTGGTGATGTCATGC	NA	False	NA	12	True	AATAAA	-14	NA	111760548	111782197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_111760577_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ENSMUSG00000031967.16_2	chr8	+	2502	17	FSM	ENSMUSG00000031967.16	ENSMUST00000001520.13	4227	17	-15	1740	-15	561	multi-exon	FALSE	canonical	3	631	junction_4	44.0414843499853	1070	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACACGTCTCAGATAAGA	7480	False	NA	14	True	ATTAAA	-17	NA	124204626	124228915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124226730_124226847_124227971_124228173_124228253_124228449_124228586
ENSMUSG00000031969.17_1	chr9	-	1816	11	FSM	ENSMUSG00000031969.17	ENSMUST00000060513.8	2859	11	31	1012	-10	220	multi-exon	FALSE	canonical	3	181	junction_10	23.6862829502647	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTGGATTTTTTATTT	9279	False	NA	-14	True	AATAAA	-25	NA	26910814	26886451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903557_26910689
ENSMUSG00000031969.17_2	chr9	-	1843	11	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	-10	219	combination_of_known_junctions	FALSE	canonical	3	47	junction_10	61.1735236846791	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATTTGGATTTTTTATT	9279	False	NA	-15	True	AATAAA	-24	NA	26910814	26886452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903585_26910689
ENSMUSG00000031969.17_9	chr9	-	2641	10	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	-10	393	intron_retention	FALSE	canonical	3	181	junction_9	24.6986779273309	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTTAGAACAATTAGAAAT	9279	False	NA	-16	True	ATTAAA	-12	NA	26910814	26886278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_26887057_26888851_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903557_26910689
ENSMUSG00000031971.16_1	chr8	-	2360	3	FSM	ENSMUSG00000031971.16	ENSMUST00000034452.12	2390	3	27	3	27	-3	multi-exon	FALSE	canonical	3	74	junction_2	2	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGCCTTGCTAGTGA	NA	False	NA	NA	False	ATTAAA	-23	NA	124586242	124567572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_124569258_124571918_124572185_124585833
ENSMUSG00000031974.9_0	chr8	-	1551	1	ISM	ENSMUSG00000031974.9	ENSMUST00000075578.7	4306	13	29111	2	29111	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGTGTCTGTGTGTTAT	NA	False	NA	-2	True	ATTAAA	-16	NA	124680750	124679199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_124679200_124680800
ENSMUSG00000031974.9_1	chr8	-	4054	13	FSM	ENSMUSG00000031974.9	ENSMUST00000075578.7	4306	13	248	4	248	-4	multi-exon	TRUE	canonical	3	39	junction_3	9.48536885008813	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATCTGTGTCTGTGTGTT	7125	False	NA	-4	True	ATTAAA	-14	NA	124709613	124679201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_124681315_124681461_124681497_124682511_124682556_124685237_124685419_124686948_124687029_124688734_124688945_124689731_124689828_124691729_124691866_124693204_124693352_124694739_124694875_124696458_124696662_124697709_124697911_124709140
ENSMUSG00000031976.15_0	chr8	+	5827	10	NNC	ENSMUSG00000031976.15	novel	6073	10	NA	NA	-28	-6	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	48.5083676121457	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCACATAGTATTCTGC	NA	False	NA	14	True	AATAAA	-18	NA	124748218	124775237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_124748266_124750198_124750338_124751794_124751972_124754597_124757929_124761766_124761928_124763374_124763486_124764899_124765143_124767904_124767993_124771817_124771958_124773847
ENSMUSG00000031976.15_1	chr8	+	6086	10	NIC	ENSMUSG00000031976.15	novel	6073	10	NA	NA	-6	-6	combination_of_known_junctions	FALSE	canonical	3	104	junction_1	31.2552217859494	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCACATAGTATTCTGC	NA	False	NA	14	True	AATAAA	-18	NA	124748240	124775237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_124748547_124750198_124750338_124751794_124751972_124754597_124757929_124761766_124761928_124763374_124763486_124764899_124765143_124767904_124767993_124771817_124771958_124773847
ENSMUSG00000031976.15_14	chr8	+	5777	9	FSM	ENSMUSG00000031976.15	ENSMUST00000034457.9	5853	9	69	7	69	-6	multi-exon	FALSE	canonical	3	115	junction_1	25.7533371623951	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCACATAGTATTCTGC	NA	False	NA	14	True	AATAAA	-18	NA	124750201	124775237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124750338_124751794_124751972_124754597_124757929_124761766_124761928_124763374_124763486_124764899_124765143_124767904_124767993_124771817_124771958_124773847
ENSMUSG00000031976.15_16	chr8	+	3882	7	ISM	ENSMUSG00000031976.15	ENSMUST00000034457.9	5853	9	6047	7	6047	-6	3prime_fragment	FALSE	canonical	3	158	junction_1	18.2460041287583	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCACATAGTATTCTGC	NA	False	NA	14	True	AATAAA	-18	NA	124756179	124775237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_124757929_124761766_124761928_124763374_124763486_124764899_124765143_124767904_124767993_124771817_124771958_124773847
ENSMUSG00000031976.15_25	chr8	+	1213	1	ISM	ENSMUSG00000031976.15	ENSMUST00000173168.8	6073	10	25777	7	23891	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCACATAGTATTCTG	NA	False	NA	13	True	AATAAA	-17	NA	124774023	124775236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_124774000_124775200
ENSMUSG00000031979.18_0	chr8	+	2770	18	FSM	ENSMUSG00000031979.18	ENSMUST00000034460.11	2825	18	52	3	0	-3	multi-exon	FALSE	canonical	3	176	junction_7	26.4246660485719	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGTGAGTTATGTATC	NA	False	NA	26	True	AATAAA	-16	NA	125247557	125278744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125269690_125270748_125270901_125271867_125272042_125272758_125272832_125273289_125273433_125275255_125275396_125276905_125277090_125278129
ENSMUSG00000031979.18_1	chr8	+	4796	16	NIC	ENSMUSG00000031979.18	novel	2825	18	NA	NA	0	-3	intron_retention	FALSE	canonical	3	176	junction_7	27.5764795110294	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGTGAGTTATGTATC	NA	False	NA	26	True	AATAAA	-16	NA	125247557	125278744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125272042_125272758_125272832_125273289_125273433_125275255_125275396_125276905_125277090_125278129
ENSMUSG00000031982.6_0	chr8	+	2983	5	ISM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	31	16	11	-16	intron_retention	FALSE	canonical	3	83	junction_2	14.0890028036054	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTCCAGTTCAGTAACT	NA	False	NA	5	True	AATAAA	-14	NA	125448908	125460846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535
ENSMUSG00000031982.6_3	chr8	+	2944	5	NIC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	12	-14	intron_retention	FALSE	canonical	3	24	junction_2	37.5724300518346	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCCAGTTCAGTAACTAA	NA	False	NA	7	True	AATAAA	-16	NA	125448909	125460848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_125449082_125451994_125452115_125455107_125455222_125457530_125457756_125458535
ENSMUSG00000031982.6_5	chr8	+	2933	5	NIC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	12	-18	intron_retention	FALSE	canonical	3	31	junction_3	30.6634962129239	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATTTCCAGTTCAGTAA	NA	False	NA	3	True	AATAAA	-12	NA	125448909	125460844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_125449082_125451994_125452115_125455067_125455222_125457577_125457756_125458535
ENSMUSG00000031982.6_6	chr8	+	2409	6	NNC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	11	-14	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	40.7950977447046	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCCAGTTCAGTAACTAA	NA	False	NA	7	True	AATAAA	-16	NA	125448908	125460848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125459256
ENSMUSG00000031982.6_7	chr8	+	2884	5	ISM	ENSMUSG00000031982.6	ENSMUST00000212036.2	891	6	25	-153	25	-14	intron_retention	FALSE	canonical	3	24	junction_2	38.9767558937375	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCCAGTTCAGTAACTAA	NA	False	NA	7	True	AATAAA	-16	NA	125448922	125460848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125449082_125451994_125452115_125455107_125455222_125457577_125457756_125458535
ENSMUSG00000031982.6_8	chr8	+	1127	6	FSM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	30	8	10	-8	multi-exon	FALSE	canonical	3	19	junction_5	35.5111250173801	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCAGTAACTAAGGTTGT	NA	False	NA	13	True	AATAAA	-22	NA	125448907	125460854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125460545
ENSMUSG00000031983.8_0	chr8	-	3129	4	FSM	ENSMUSG00000031983.8	ENSMUST00000034464.8	3307	4	168	10	168	-10	multi-exon	FALSE	canonical	3	252	junction_2	4.10960933531265	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGAGAGTCAGATCTG	NA	False	NA	-13	True	AATAAA	-9	NA	125389940	125362504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_125364704_125365829_125366355_125378109_125378161_125389586
ENSMUSG00000031983.8_5	chr8	-	1625	1	ISM	ENSMUSG00000031983.8	ENSMUST00000034464.8	3307	4	25979	10	25979	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGAGAGTCAGATCTG	NA	False	NA	-13	True	AATAAA	-9	NA	125364129	125362504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_125362500_125364100
ENSMUSG00000031984.9_1	chr8	-	1343	7	FSM	ENSMUSG00000031984.9	ENSMUST00000034465.9	2340	7	126	871	20	-871	multi-exon	FALSE	canonical	3	1367	junction_2	144.59416385948	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGTCTGACTGTTAAGT	NA	False	NA	-12	True	AATACA	-12	NA	125589733	125566097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ENSMUSG00000031984.9_4	chr8	-	3654	8	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	20	-18	at_least_one_novel_splicesite	FALSE	non_canonical	2	150	junction_1	523.121595885347	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAACAAAACA	NA	False	NA	NA	False	AATAAA	-8	NA	125589733	125563701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_125565620_125565704_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ENSMUSG00000031985.10_0	chr8	+	2937	16	FSM	ENSMUSG00000031985.10	ENSMUST00000034466.10	2984	16	34	13	-5	-13	multi-exon	FALSE	canonical	3	573	junction_6	36.0101220337961	1151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTTAAACTTTATACCCAA	5154	False	NA	21	True	AATAAA	-12	NA	125589805	125616783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
ENSMUSG00000031986.7_0	chr8	+	4457	5	FSM	ENSMUSG00000031986.7	ENSMUST00000034467.7	4464	5	4	3	4	-3	multi-exon	FALSE	canonical	3	61	junction_4	8.10478253872366	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGGTTGATGTGTCTTT	NA	False	NA	6	True	AATAAA	-15	NA	125624628	125632897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_125625121_125625814_125625915_125626945_125627075_125628363_125628632_125629429
ENSMUSG00000031986.7_11	chr8	+	2219	1	ISM	ENSMUSG00000031986.7	ENSMUST00000034467.7	4464	5	6054	3	2125	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGGTTGATGTGTCTTT	NA	False	NA	6	True	AATAAA	-15	NA	125630678	125632897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125630700_125632900
ENSMUSG00000031986.7_2	chr8	+	4320	4	NIC	ENSMUSG00000031986.7	novel	4464	5	NA	NA	8	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	34.7786652353933	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAAGTGGTTGATGTGT	NA	False	NA	2	True	AATAAA	-11	NA	125624632	125632893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_125625121_125625814_125625915_125628363_125628632_125629429
ENSMUSG00000031987.7_0	chr8	-	1959	5	FSM	ENSMUSG00000031987.7	ENSMUST00000034469.7	3594	5	12	1623	12	-1623	multi-exon	FALSE	canonical	3	265	junction_4	22.6605383872493	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTGTTGCCAGTGAGTG	NA	False	NA	-9	True	ATTAAA	-24	NA	125676051	125636948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_125637503_125638479_125638548_125640755_125640893_125642399_125642520_125674971
ENSMUSG00000031987.7_3	chr8	-	1771	4	NIC	ENSMUSG00000031987.7	novel	3594	5	NA	NA	62	-1624	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	128.380510808906	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTGTTGCCAGTGAGT	NA	False	NA	-10	True	ATTAAA	-23	NA	125676001	125636949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_125637503_125638479_125638548_125642399_125642520_125674971
ENSMUSG00000031988.11_0	chr9	-	3575	6	FSM	ENSMUSG00000031988.11	ENSMUST00000034470.11	3575	6	-6	6	-6	-6	multi-exon	FALSE	canonical	3	156	junction_3	12.273548794053	335	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCACCAGATTCTGTGGTC	NA	False	NA	-9	True	ATTAAA	-36	NA	26941367	26919072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_26921334_26921659_26921803_26924020_26924197_26926452_26926618_26930613_26930771_26940694
ENSMUSG00000031990.16_0	chr9	-	1939	9	FSM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	0	3	0	-3	multi-exon	FALSE	canonical	3	88	junction_8	42.8396355610082	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTCATGTTTGTATTTTT	NA	False	NA	-4	True	ATTAAA	-11	NA	27066689	27008682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
ENSMUSG00000031990.16_1	chr9	-	1916	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	5189	-1	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_8	47.0729155141255	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATGTTTGTATTTTTTT	NA	False	NA	-2	True	ATTAAA	-13	NA	27032657	27008680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27032579
ENSMUSG00000031990.16_4	chr9	-	1987	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4344	-6	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_8	53.8573056789884	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTAGTCATGTTTGTATT	NA	False	NA	-7	True	ATTAAA	-8	NA	27033502	27008685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
ENSMUSG00000031993.8_0	chr9	+	4819	11	FSM	ENSMUSG00000031993.8	ENSMUST00000164099.3	5762	11	-50	993	-50	-993	multi-exon	TRUE	canonical	3	26	junction_9	7.52927619363243	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAGGTTGTGAAAT	NA	False	NA	NA	False	ATTAAA	-10	NA	30338353	30377029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_30340553_30343530_30343670_30344625_30344727_30344831_30344952_30347107_30347239_30348070_30348168_30348645_30348827_30351391_30351522_30373526_30373712_30374515_30374604_30375581
ENSMUSG00000031993.8_1	chr9	+	4632	10	NIC	ENSMUSG00000031993.8	novel	5762	11	NA	NA	-50	-995	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	12.7898493702459	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAGAAAAAAAGGTTGTGAA	NA	False	NA	NA	False	ATTAAA	-8	NA	30338353	30377027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_30340553_30343530_30343670_30344625_30344727_30344831_30344952_30347107_30347239_30348070_30348168_30348645_30348827_30351391_30351522_30374515_30374604_30375581
ENSMUSG00000031993.8_10	chr9	+	785	1	ISM	ENSMUSG00000031993.8	ENSMUST00000164099.3	5762	11	37841	993	29092	-993	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAGGTTGTGAAAT	NA	False	NA	NA	False	ATTAAA	-10	NA	30376244	30377029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_30376200_30377000
ENSMUSG00000031993.8_2	chr9	+	2306	1	Genic_Genomic	ENSMUSG00000031993.8	novel	NA	NA	NA	NA	-52	-35312	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATTAAATAAAGTGG	NA	False	NA	NA	False	NA	NA	NA	30338351	30340657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_+_30338400_30340700
ENSMUSG00000031994.14_0	chr9	+	3545	9	FSM	ENSMUSG00000031994.14	ENSMUST00000068135.13	3631	9	79	7	79	-7	multi-exon	TRUE	canonical	3	22	junction_2	5.53257399408268	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACCAATGAAATTGTCTAG	NA	False	NA	NA	False	ACTAAA	-11	NA	30853936	30874145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_30854898_30862561_30862802_30863890_30864027_30864651_30864820_30865762_30866068_30867791_30867976_30870209_30870383_30870497_30870674_30872943
ENSMUSG00000031994.14_4	chr9	+	1472	3	ISM	ENSMUSG00000031994.14	ENSMUST00000068135.13	3631	9	16431	7	15535	-7	3prime_fragment	FALSE	canonical	3	28	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACCAATGAAATTGTCTAG	NA	False	NA	NA	False	ACTAAA	-11	NA	30870288	30874145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_30870383_30870497_30870674_30872943
ENSMUSG00000031995.10_0	chr9	-	3210	19	FSM	ENSMUSG00000031995.10	ENSMUST00000034478.3	3259	19	43	6	-14	-6	multi-exon	FALSE	canonical	3	531	junction_11	45.3756610671839	1248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTAATTTGTTTTTCTTGC	NA	False	NA	-6	True	AGTAAA	-18	NA	31043106	31000703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
ENSMUSG00000031996.18_0	chr9	-	3655	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	-22	1	2	-1	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	1791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACCTTGTGTTCCTGACC	8717	False	NA	-10	True	AATAAA	-18	NA	31123109	31060853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUSG00000031996.18_1	chr9	-	3486	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	-26	2	2	0	multi-exon	FALSE	canonical	3	473	junction_10	230.67090554872	1096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACCTTGTGTTCCTGAC	8717	False	NA	-11	True	AATAAA	-17	NA	31123109	31060854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUSG00000032000.18_0	chr9	-	2264	8	NIC	ENSMUSG00000032000.18	novel	2667	9	NA	NA	15	-9	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	8.16663195883226	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAAAATTGATGCTGGG	291	False	NA	NA	False	AATAAA	-25	NA	7872883	7848708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_7849458_7849672_7849715_7854367_7854608_7857390_7857440_7858701_7858781_7860263_7860364_7860463_7861409_7872823
ENSMUSG00000032000.18_2	chr9	-	2504	9	FSM	ENSMUSG00000032000.18	ENSMUST00000013949.15	2667	9	154	9	-13	-9	multi-exon	FALSE	canonical	3	8	junction_2	6.89202437604511	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAAAATTGATGCTGGG	-26	True	NA	NA	False	AATAAA	-25	NA	7872871	7848708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_7849458_7849672_7849715_7850920_7851173_7854367_7854608_7857390_7857440_7858701_7858781_7860263_7860364_7860463_7861409_7872823
ENSMUSG00000032000.18_3	chr9	-	2639	9	NIC	ENSMUSG00000032000.18	novel	2667	9	NA	NA	-7	-14	combination_of_known_junctions	FALSE	canonical	2	6	junction_8	7.964766161037	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTAAAGAAAATTGATG	-4	True	NA	NA	False	AATAAA	-20	NA	7873178	7848713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_7849458_7849672_7849715_7850920_7851173_7854367_7854608_7857390_7857440_7858701_7858781_7860263_7860364_7860463_7861409_7872990
ENSMUSG00000032000.18_4	chr9	-	1789	8	ISM	ENSMUSG00000032000.18	ENSMUST00000013949.15	2667	9	12284	9	-414	-9	3prime_fragment	FALSE	canonical	3	8	junction_2	6.62093155786084	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAAAATTGATGCTGGG	7390	False	NA	NA	False	AATAAA	-25	NA	7860741	7848708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_7849458_7849672_7849715_7850920_7851173_7854367_7854608_7857390_7857440_7858701_7858781_7860263_7860364_7860463
ENSMUSG00000032002.11_0	chr9	+	1213	8	FSM	ENSMUSG00000032002.11	ENSMUST00000215683.2	2421	8	30	1178	-1	-13	multi-exon	FALSE	canonical	3	895	junction_7	57.310824564343	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCTTAAAGTGAAGATGT	9	True	NA	11	True	AATAAA	-19	NA	7184549	7207027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161_7189254_7203262_7203372_7203450_7203556_7205297_7205401_7206719
ENSMUSG00000032002.11_23	chr9	+	186	1	ISM	ENSMUSG00000032002.11	ENSMUST00000215683.2	2421	8	22326	1174	3361	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGTGAAGATGTCCGT	NA	False	NA	15	True	AATAAA	-23	NA	7206845	7207031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_7206800_7207000
ENSMUSG00000032009.9_0	chr9	+	2122	10	FSM	ENSMUSG00000032009.9	ENSMUST00000208222.2	9125	10	30	6973	30	311	multi-exon	FALSE	canonical	3	39	junction_6	6.49976257875985	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTTACAATTCGCTCAAG	NA	False	NA	NA	False	NA	NA	NA	14187626	14237424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_14187926_14217494_14217561_14219756_14219955_14221543_14221727_14225791_14226029_14227361_14227537_14231590_14231710_14232367_14232559_14233858_14234004_14236915
ENSMUSG00000032009.9_1	chr9	+	1780	5	ISM	ENSMUSG00000032009.9	ENSMUST00000208222.2	9125	10	29	17573	29	-1080	5prime_fragment	FALSE	canonical	3	46	junction_3	6.75925291729789	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTCTTTCTTTTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	14187625	14226824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_14187926_14217494_14217561_14219756_14219955_14221543_14221727_14225791
ENSMUSG00000032009.9_9	chr9	+	3834	1	ISM	ENSMUSG00000032009.9	ENSMUST00000208222.2	9125	10	52964	3	7610	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCCTGCTTTCTTTCTTT	NA	False	NA	6	True	AATAAA	-12	NA	14240560	14244394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_14240600_14244400
ENSMUSG00000032010.16_0	chr9	+	3806	13	FSM	ENSMUSG00000032010.16	ENSMUST00000034508.14	3867	13	53	8	-4	-8	multi-exon	FALSE	canonical	3	29	junction_2	11.1654228162962	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGAAGCTGGTGTGACG	NA	False	NA	NA	False	AATAAA	-12	NA	43978370	44006916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_43978518_43986662_43987520_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
ENSMUSG00000032010.16_4	chr9	+	3818	13	NIC	ENSMUSG00000032010.16	novel	908	4	NA	NA	-65	-8	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	16.8349834174753	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGAAGCTGGTGTGACG	NA	False	NA	NA	False	AATAAA	-12	NA	43983435	44006916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_43983595_43986662_43987520_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
ENSMUSG00000032010.16_5	chr9	+	3194	12	FSM	ENSMUSG00000032010.16	ENSMUST00000065461.9	2057	12	5	-1142	5	-8	multi-exon	FALSE	canonical	3	22	junction_1	11.7473401244707	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGAAGCTGGTGTGACG	2253	False	NA	NA	False	AATAAA	-12	NA	43996240	44006916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_43996633_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
ENSMUSG00000032011.6_0	chr9	+	1693	4	FSM	ENSMUSG00000032011.6	ENSMUST00000114840.2	1735	4	42	0	42	0	multi-exon	FALSE	canonical	3	7	junction_3	3.74165738677394	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTGTCTGTCTCTTCT	NA	False	NA	34	True	AATAAA	-20	NA	43954722	43959876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_43954774_43957253_43957316_43957910_43958250_43958635
ENSMUSG00000032012.10_0	chr9	+	5661	6	FSM	ENSMUSG00000032012.10	ENSMUST00000034510.9	5653	6	-15	7	-15	-7	multi-exon	FALSE	canonical	3	13	junction_5	3.03315017762062	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAAGCCCAAGTGCCTC	NA	False	NA	NA	False	AATAAA	-7	NA	43655265	43718751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_43656020_43702333_43702685_43703173_43703477_43703744_43703863_43705386_43705539_43714768
ENSMUSG00000032012.10_2	chr9	+	2208	1	ISM	ENSMUSG00000032012.10	ENSMUST00000034510.9	5653	6	61263	7	11126	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAAGCCCAAGTGCCTC	NA	False	NA	NA	False	AATAAA	-7	NA	43716543	43718751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_43716500_43718800
ENSMUSG00000032014.7_0	chr9	-	1811	4	FSM	ENSMUSG00000032014.7	ENSMUST00000034512.7	2526	4	46	669	46	563	multi-exon	FALSE	canonical	3	37	junction_2	2.62466929133727	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTATGGCGCCAGCTTAG	NA	False	NA	-4	True	AATAAA	-21	NA	43151162	43133200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_43134137_43135193_43135375_43136172_43136308_43150603
ENSMUSG00000032014.7_3	chr9	-	1796	4	NIC	ENSMUSG00000032014.7	novel	2526	4	NA	NA	78	559	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	17.2111075245674	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACCCTATGGCGCCAGC	NA	False	NA	-8	True	AATAAA	-17	NA	43151130	43133204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_43134137_43135172_43135375_43136172_43136308_43150603
ENSMUSG00000032015.17_1	chr9	-	2788	13	NNC	ENSMUSG00000032015.17	novel	2522	13	NA	NA	5496	-3	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_12	21.2895057611856	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGAGATGTTCAGAGGA	5117	False	NA	NA	False	CATAAA	-14	NA	43111556	43035236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_43036426_43038610_43038753_43040172_43040240_43045773_43045936_43048589_43048727_43050610_43050753_43051114_43051298_43054009_43054093_43056515_43056619_43058106_43058212_43087582_43087618_43110326_43110396_43111185
ENSMUSG00000032015.17_2	chr9	-	2640	13	FSM	ENSMUSG00000032015.17	ENSMUST00000176636.5	2522	13	-121	3	-121	-3	multi-exon	FALSE	canonical	3	54	junction_12	13.5359603361646	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGAGATGTTCAGAGGA	NA	False	NA	NA	False	CATAAA	-14	NA	43117173	43035236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_43036426_43038610_43038753_43040172_43040240_43045773_43045936_43048589_43048727_43050610_43050753_43051114_43051298_43054009_43054093_43056515_43056619_43058106_43058212_43087582_43087618_43110326_43110396_43116950
ENSMUSG00000032017.15_0	chr9	-	3600	21	FSM	ENSMUSG00000032017.15	ENSMUST00000114865.8	5887	21	2	2285	2	-8	multi-exon	TRUE	canonical	1	2	junction_7	2.95761728423405	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTGTATATTTTTGTTG	NA	False	NA	NA	False	ATTAAA	-25	NA	42855787	42431715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_42432482_42435775_42435895_42448609_42448739_42453117_42453344_42455053_42455220_42458862_42459037_42461702_42461813_42477594_42477709_42502645_42502850_42509149_42509258_42533354_42533460_42534221_42534375_42540272_42540435_42566782_42566837_42571013_42571193_42582433_42582600_42586508_42586607_42599228_42599394_42719788_42719921_42730165_42730271_42855622
ENSMUSG00000032018.15_0	chr9	-	2243	6	FSM	ENSMUSG00000032018.15	ENSMUST00000052725.15	4787	6	0	2544	0	594	multi-exon	FALSE	canonical	3	174	junction_5	23.9198662203617	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTATCCACTTAAATGTTA	NA	False	NA	-12	True	AATAAA	-17	NA	42175552	42165434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175501
ENSMUSG00000032018.15_1	chr9	-	2624	1	ISM	ENSMUSG00000032018.15	ENSMUST00000052725.15	4787	6	10037	1	9981	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATCATTGTGTGGACCTG	NA	False	NA	-2	True	NA	NA	NA	42165515	42162891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_42162900_42165500
ENSMUSG00000032018.15_10	chr9	-	4703	5	FSM	ENSMUSG00000032018.15	ENSMUST00000217513.2	703	5	-1	-3999	0	-3	multi-exon	TRUE	canonical	2	2	junction_4	78.337411241373	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAATCATTGTGTGGACC	NA	False	NA	-4	True	NA	NA	NA	42175552	42162893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42175501
ENSMUSG00000032018.15_3	chr9	-	2284	6	FSM	ENSMUSG00000032018.15	ENSMUST00000169609.2	1677	6	-12	-595	-12	595	multi-exon	FALSE	canonical	3	15	junction_5	75.9910521048367	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATCCACTTAAATGTTAT	NA	False	NA	-11	True	AATAAA	-18	NA	42175508	42165433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175417
ENSMUSG00000032018.15_8	chr9	-	2186	5	ISM	ENSMUSG00000032018.15	ENSMUST00000169609.2	1677	6	2067	-586	2067	586	3prime_fragment	FALSE	canonical	3	176	junction_1	24.7323169153236	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTGCTATTATCCACTT	NA	False	NA	-20	True	AATAAA	-9	NA	42173429	42165442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346
ENSMUSG00000032020.16_0	chr9	-	483	1	ISM	ENSMUSG00000032020.16	ENSMUST00000044155.15	6354	14	146481	1	67925	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTAAGTCCTGAGTGTG	NA	False	NA	NA	False	AATAAA	-37	NA	40922877	40922394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_40922400_40922900
ENSMUSG00000032020.16_2	chr9	-	3460	14	FSM	ENSMUSG00000032020.16	ENSMUST00000044155.15	6354	14	351	2543	-209	1080	multi-exon	FALSE	canonical	0	0	junction_12	2.76067052998867	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCAAAACATCCCATATC	6713	False	NA	NA	False	AATAAA	-9	NA	41069007	40924936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_40926333_40927893_40928004_40929312_40929420_40934716_40934862_40937545_40937639_40939312_40939436_40940934_40941056_40942776_40942910_40948732_40948942_40954770_40954941_40958176_40958376_40961735_40961923_40962612_40962667_41068594
ENSMUSG00000032024.11_1	chr9	+	3321	4	ISM	ENSMUSG00000032024.11	ENSMUST00000034522.8	4154	7	86469	5	-1613	-5	3prime_fragment	FALSE	canonical	3	9	junction_1	0.816496580927726	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGACATTTGTAAAATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	40683776	40696610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_40683825_40685658_40685782_40692408_40692551_40693602
ENSMUSG00000032024.11_3	chr9	+	3176	2	ISM	ENSMUSG00000032024.11	ENSMUST00000134153.2	616	4	6991	-2841	6991	-7	3prime_fragment	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTGACATTTGTAAAATA	4533	False	NA	NA	False	AATAAA	-12	NA	40692380	40696608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_40692551_40693602
ENSMUSG00000032024.11_4	chr9	+	1418	1	ISM	ENSMUSG00000032024.11	ENSMUST00000034522.8	4154	7	97876	14	9794	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGCCAAACTGACATTTG	7336	False	NA	NA	False	AATAAA	-5	NA	40695183	40696601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_40695200_40696600
ENSMUSG00000032026.8_0	chr9	-	1055	7	FSM	ENSMUSG00000032026.8	ENSMUST00000034524.5	1077	7	19	3	1	-3	multi-exon	FALSE	canonical	3	1058	junction_4	53.1959167188193	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCCTTCGGCACCCTCTG	NA	False	NA	-4	True	AATAAA	-23	NA	48391892	48379814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419_48386498_48390609_48390694_48391706
ENSMUSG00000032026.8_19	chr9	-	1989	3	FSM	ENSMUSG00000032026.8	ENSMUST00000214161.2	553	3	0	-1436	0	6	multi-exon	FALSE	canonical	3	1141	junction_1	21.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAAAGTTTTTAGTGTTA	NA	False	NA	-4	True	AATAAA	-21	NA	48391893	48384779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_48386498_48390609_48390694_48391706
ENSMUSG00000032030.17_13	chr9	-	4454	19	NIC	ENSMUSG00000032030.17	novel	5945	20	NA	NA	73	828	combination_of_known_junctions	FALSE	canonical	3	65	junction_18	82.5942222891865	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGTTAATTATGTCCTAA	NA	False	NA	NA	False	ATTAAA	-17	NA	53581241	53527071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53581150
ENSMUSG00000032030.17_24	chr9	-	6107	20	NIC	ENSMUSG00000032030.17	novel	5945	20	NA	NA	29	-95	combination_of_known_junctions	FALSE	canonical	3	18	junction_17	116.29602118274	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAGTGTAATATAA	NA	False	NA	-38	True	NA	NA	NA	53578758	53525976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569257_53569486_53569870_53569981_53578337
ENSMUSG00000032030.17_7	chr9	-	3586	19	FSM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	49	-50	25	50	multi-exon	FALSE	canonical	3	311	junction_17	44.7831882587348	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAAAAATTAAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	53578762	53528273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
ENSMUSG00000032030.17_8	chr9	-	2768	1	ISM	ENSMUSG00000032030.17	ENSMUST00000166367.8	5942	18	50076	82	4603	-82	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATAAAACATTTCATCTA	8032	False	NA	-25	True	AATAAA	-6	NA	53528731	53525963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53526000_53528700
ENSMUSG00000032035.17_0	chr9	+	5074	8	FSM	ENSMUSG00000032035.17	ENSMUST00000034534.13	5080	8	2	4	2	-4	multi-exon	FALSE	canonical	1	1	junction_6	2.24971653543195	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGAGGTGGCTCTGGCT	NA	False	NA	NA	False	ATTAAA	-20	NA	32607319	32669112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_32607762_32639970_32640091_32641350_32641552_32644244_32644323_32645235_32645485_32649394_32649656_32664094_32664214_32665508
ENSMUSG00000032038.8_0	chr9	-	2060	11	FSM	ENSMUSG00000032038.8	ENSMUST00000034537.8	2095	11	26	9	26	-9	multi-exon	FALSE	canonical	3	169	junction_1	8.15107354892593	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGAAGCACTTGTGGG	NA	False	NA	-11	True	ATTAAA	-15	NA	35028143	34957880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_34958816_34959114_34959259_34963535_34963680_34964373_34964564_34964667_34964764_34965358_34965420_34965730_34965829_34965997_34966079_34966493_34966579_34966869_34966946_35027993
ENSMUSG00000032038.8_2	chr9	-	4123	2	ISM	ENSMUSG00000032038.8	ENSMUST00000034537.8	2095	11	65867	9	4788	-9	3prime_fragment	FALSE	canonical	3	169	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGAAGCACTTGTGGG	NA	False	NA	-11	True	ATTAAA	-15	NA	34962302	34957880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_34958816_34959114
ENSMUSG00000032040.16_1	chr9	-	1203	6	FSM	ENSMUSG00000032040.16	ENSMUST00000034539.12	1274	6	66	5	-2	-1	multi-exon	FALSE	canonical	3	621	junction_4	33.1083071146804	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACTGATGGTGTAGCCC	NA	False	NA	-8	True	AATAAA	-17	NA	35087291	35035708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_35036141_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
ENSMUSG00000032040.16_4	chr9	-	1346	7	NNC	ENSMUSG00000032040.16	novel	1445	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	302.376375105963	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTGATGGTGTAGCCCA	NA	False	NA	-7	True	AATAAA	-18	NA	35087292	35035707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_35036141_35037206_35037348_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
ENSMUSG00000032041.16_0	chr9	-	4489	7	FSM	ENSMUSG00000032041.16	ENSMUST00000176685.8	1783	7	69	-2775	-18	-18	multi-exon	FALSE	canonical	3	40	junction_5	13.6065752079239	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGTCTAATACTTTTCA	8004	False	NA	NA	False	NA	NA	NA	35111197	35095864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110516_35110616_35111152
ENSMUSG00000032041.16_2	chr9	-	2361	1	ISM	ENSMUSG00000032041.16	ENSMUST00000175765.8	4589	7	13376	4	4485	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATGTTGTTTCATCTT	902	False	NA	NA	False	NA	NA	NA	35098211	35095850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_35095800_35098200
ENSMUSG00000032041.16_3	chr9	-	2281	7	FSM	ENSMUSG00000032041.16	ENSMUST00000176531.8	2310	7	36	-7	-9	7	multi-exon	FALSE	canonical	3	44	junction_5	12.2031416719903	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8013	False	NA	NA	False	NA	NA	NA	35111188	35098073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110506_35110616_35111152
ENSMUSG00000032041.16_6	chr9	-	2303	7	FSM	ENSMUSG00000032041.16	ENSMUST00000177129.8	2366	7	63	0	3	0	multi-exon	FALSE	canonical	2	3	junction_6	26.9160216640985	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7980	False	NA	NA	False	NA	NA	NA	35111221	35098080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110506_35110616_35111156
ENSMUSG00000032042.12_0	chr9	+	2939	14	FSM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	42	12	42	-12	multi-exon	TRUE	canonical	3	518	junction_4	138.528744373691	1751	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGAAATTGCCTCTTAGG	5554	False	NA	-9	True	AATAAA	-6	NA	35122492	35128298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
ENSMUSG00000032044.5_0	chr9	+	1800	7	FSM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	14	7	14	-7	multi-exon	FALSE	canonical	3	136	junction_6	10.6052921799554	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATGTTTTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	35179174	35187254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35183924_35183997_35184143_35184763_35184862_35186359
ENSMUSG00000032044.5_1	chr9	+	1872	6	NIC	ENSMUSG00000032044.5	novel	1821	7	NA	NA	16	-7	intron_retention	FALSE	canonical	3	136	junction_5	9.97196068985433	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATGTTTTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	35179176	35187254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35184143_35184763_35184862_35186359
ENSMUSG00000032044.5_9	chr9	+	1376	5	ISM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	2158	7	2158	-7	3prime_fragment	FALSE	canonical	3	136	junction_4	10.356157588604	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATGTTTTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	35181318	35187254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_35181463_35183829_35183924_35183997_35184143_35184763_35184862_35186359
ENSMUSG00000032046.16_1	chr2	-	1929	13	FSM	ENSMUSG00000032046.16	ENSMUST00000056149.15	1999	13	48	22	-31	2	multi-exon	FALSE	canonical	2	181	junction_4	35.7897991363771	287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTGTTTTCTCTACA	NA	False	NA	-27	True	AATAAA	-16	NA	150746613	150674434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_150675061_150676198_150676327_150677192_150677272_150679271_150679355_150680234_150680315_150680660_150680699_150681639_150681770_150684165_150684212_150685310_150685342_150688163_150688284_150690271_150690378_150700279_150700405_150746276
ENSMUSG00000032047.6_0	chr9	-	1519	12	FSM	ENSMUSG00000032047.6	ENSMUST00000034547.6	3405	12	33	1853	-19	112	multi-exon	FALSE	canonical	3	149	junction_5	11.4912830779187	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATTTTATTTTTTTGT	NA	False	NA	-26	True	AATAAA	-13	NA	53521649	53493674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_53493966_53494736_53494895_53496139_53496205_53498752_53498867_53500477_53500574_53502606_53502758_53503267_53503412_53505705_53505807_53505993_53506090_53506582_53506701_53509384_53509433_53521512
ENSMUSG00000032047.6_5	chr9	-	1296	10	ISM	ENSMUSG00000032047.6	ENSMUST00000034547.6	3405	12	15020	1853	-11605	112	3prime_fragment	FALSE	canonical	3	149	junction_5	11.6438931167192	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATTTTATTTTTTTGT	NA	False	NA	-26	True	AATAAA	-13	NA	53506662	53493674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53493966_53494736_53494895_53496139_53496205_53498752_53498867_53500477_53500574_53502606_53502758_53503267_53503412_53505705_53505807_53505993_53506090_53506582
ENSMUSG00000032050.19_0	chr9	+	4227	14	FSM	ENSMUSG00000032050.19	ENSMUST00000000590.16	4380	14	153	0	-3	0	multi-exon	FALSE	canonical	3	758	junction_13	85.8483594974439	1833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTTGGAGGTCCGCTGTT	NA	False	NA	15	True	AATAAA	-15	NA	51959567	52000029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106_51980204_51980914_51981079_51984453_51984585_51992318_51992480_51993742_51993836_51996402_51996646_51997614
ENSMUSG00000032050.19_46	chr9	+	1764	1	ISM	ENSMUSG00000032050.19	ENSMUST00000163153.9	4131	14	39793	6	38695	0	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTTGGAGGTCCGCTGTT	NA	False	NA	15	True	AATAAA	-15	NA	51998265	52000029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_51998300_5.2e+07
ENSMUSG00000032051.10_0	chr9	-	909	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	-40	6	-30	-6	multi-exon	FALSE	canonical	3	440	junction_2	28.5929284186765	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTACCATGAGTGTGTTT	997	False	NA	-11	True	AATAAA	-11	NA	51874886	51854611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
ENSMUSG00000032058.15_1	chr9	+	3203	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	32	195	3	-195	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	1039	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACCAAATTGTGTAAA	19	True	NA	3	True	ATTAAA	-9	NA	50768268	50792536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
ENSMUSG00000032059.14_14	chr9	+	2741	14	NIC	ENSMUSG00000032059.14	novel	463	5	NA	NA	-3	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	59.440487865033	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTTTTAAGATTTTTTT	NA	False	NA	22	True	TTTAAA	-29	NA	50686842	50754826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_50687284_50687843_50687980_50690269_50690405_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
ENSMUSG00000032059.14_15	chr9	+	2810	15	NIC	ENSMUSG00000032059.14	novel	463	5	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.3522794004038	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTTTTAAGATTTTTTT	NA	False	NA	22	True	TTTAAA	-29	NA	50686844	50754826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_50687284_50687843_50687980_50690269_50690405_50694557_50694629_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
ENSMUSG00000032059.14_3	chr9	+	2581	15	FSM	ENSMUSG00000032059.14	ENSMUST00000034561.11	2873	15	290	2	4	-2	multi-exon	FALSE	canonical	3	151	junction_3	29.092042533578	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTTTTAAGATTTTTTT	NA	False	NA	22	True	TTTAAA	-29	NA	50686608	50754826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_50686819_50687843_50687980_50690269_50690405_50694557_50694629_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
ENSMUSG00000032059.14_4	chr9	+	2511	14	FSM	ENSMUSG00000032059.14	ENSMUST00000162073.8	2530	14	3	16	3	-2	multi-exon	FALSE	canonical	3	64	junction_3	42.7472273227982	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTTTTAAGATTTTTTT	NA	False	NA	22	True	TTTAAA	-29	NA	50686607	50754826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_50686819_50687843_50687980_50690269_50690405_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
ENSMUSG00000032059.14_7	chr9	+	2458	14	NIC	ENSMUSG00000032059.14	novel	2873	15	NA	NA	4	-2	combination_of_known_splicesites	FALSE	canonical	2	8	junction_8	55.2657913388354	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTTTTAAGATTTTTTT	NA	False	NA	22	True	TTTAAA	-29	NA	50686608	50754826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_50686819_50687843_50687980_50690269_50690405_50694557_50694629_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
ENSMUSG00000032060.11_1	chr9	+	935	3	FSM	ENSMUSG00000032060.11	ENSMUST00000034562.9	946	3	98	-87	12	0	multi-exon	FALSE	canonical	3	16	junction_1	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAACCTGCCTCGTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	50664304	50667930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_50664778_50665811_50665935_50667591
ENSMUSG00000032060.11_2	chr9	+	874	4	FSM	ENSMUSG00000032060.11	ENSMUST00000216755.2	836	4	-47	9	-20	-3	multi-exon	FALSE	canonical	2	5	junction_1	6.0184900284226	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAACAAACCTGCCTCGTG	NA	False	NA	NA	False	AATAAA	-11	NA	50664272	50667927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_50664396_50664485_50664778_50665811_50665935_50667591
ENSMUSG00000032062.4_0	chr9	-	1245	4	FSM	ENSMUSG00000032062.4	ENSMUST00000034564.4	1257	4	4	8	4	-8	multi-exon	FALSE	canonical	3	23	junction_3	2.16024689946929	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACAGGCTGGTGATTGAT	2120	False	NA	NA	False	AATAAA	-9	NA	50657832	50650998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50652050_50652595_50652661_50653560_50653599_50657741
ENSMUSG00000032062.4_1	chr9	-	631	1	ISM	ENSMUSG00000032062.4	ENSMUST00000239417.2	1242	4	6199	1	6189	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGATTGATTGTTCCT	8330	False	NA	NA	False	AATAAA	-16	NA	50651622	50650991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_50651000_50651600
ENSMUSG00000032062.4_2	chr9	-	1214	3	NIC	ENSMUSG00000032062.4	novel	1257	4	NA	NA	2	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	14	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGGTGATTGATTGTTC	2118	False	NA	NA	False	AATAAA	-14	NA	50657834	50650993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_50652050_50652595_50652661_50657741
ENSMUSG00000032064.18_1	chr9	-	5630	20	FSM	ENSMUSG00000032064.18	ENSMUST00000117646.8	5719	20	85	4	-7	-4	multi-exon	FALSE	canonical	3	25	junction_7	7.12181308422569	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAAATCCACTTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	50639282	50574059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50577576_50578959_50579069_50580749_50580856_50592786_50592854_50593332_50593501_50593836_50593927_50595024_50595097_50595173_50595267_50595653_50595708_50596127_50596233_50598660_50598712_50599902_50599957_50601159_50601250_50604842_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
ENSMUSG00000032064.18_19	chr9	-	2270	16	ISM	ENSMUSG00000032064.18	ENSMUST00000117646.8	5719	20	94	18830	2	-4882	5prime_fragment	FALSE	canonical	3	25	junction_3	7.76316086827181	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTAACTCTTGATATCACT	NA	False	NA	NA	False	AGTAAA	-17	NA	50639273	50592885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_50593501_50593836_50593927_50595024_50595097_50595173_50595267_50595653_50595708_50596127_50596233_50598660_50598712_50599902_50599957_50601159_50601250_50604842_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
ENSMUSG00000032064.18_2	chr9	-	5551	19	NIC	ENSMUSG00000032064.18	novel	5719	20	NA	NA	-18	-4	combination_of_known_splicesites	FALSE	canonical	3	7	junction_5	10.077477638554	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAAATCCACTTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	50639293	50574059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_50577576_50578959_50579069_50580749_50580856_50592786_50592854_50593332_50593501_50595024_50595097_50595173_50595267_50595653_50595708_50596127_50596233_50598660_50598712_50599902_50599957_50601159_50601250_50604842_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
ENSMUSG00000032064.18_23	chr9	-	2018	7	ISM	ENSMUSG00000032064.18	ENSMUST00000117646.8	5719	20	64	29845	-28	867	5prime_fragment	FALSE	canonical	3	46	junction_1	1.77169096878911	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAATGAGTACTTAATGAC	NA	False	NA	NA	False	TTTAAA	-20	NA	50639303	50603900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
ENSMUSG00000032064.18_3	chr9	-	2581	1	ISM	ENSMUSG00000032064.18	ENSMUST00000034566.15	5709	20	62635	8	19054	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAAATCCACTTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	50576640	50574059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_50574100_50576600
ENSMUSG00000032065.7_0	chr9	-	891	5	FSM	ENSMUSG00000032065.7	ENSMUST00000034568.7	895	5	3	1	3	-1	multi-exon	FALSE	canonical	3	20	junction_4	2.27760839478607	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATATTTCCATTTGAT	6980	False	NA	NA	False	AATAAA	-20	NA	50472607	50468225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470599_50472525
ENSMUSG00000032066.10_0	chr9	-	1932	10	ISM	ENSMUSG00000032066.10	ENSMUST00000119103.2	2118	12	8921	6	8921	-6	3prime_fragment	FALSE	canonical	0	0	junction_4	1.47405546238018	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTAATTATGATCATGTAT	NA	False	NA	NA	False	ATTAAA	-13	NA	50457560	50444392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_50444820_50445909_50446021_50446777_50446961_50447530_50447669_50450145_50450314_50451396_50451558_50452342_50452472_50455756_50455860_50456646_50456763_50457164
ENSMUSG00000032066.10_1	chr9	-	2990	9	NIC	ENSMUSG00000032066.10	novel	2118	12	NA	NA	8950	-2	intron_retention	TRUE	canonical	0	0	junction_4	1.53602571593056	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATGATCATGTATATTT	NA	False	NA	NA	False	ATTAAA	-17	NA	50457531	50444388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_50444820_50445909_50446021_50446777_50446961_50447530_50447669_50450145_50451558_50452342_50452472_50455756_50455860_50456646_50456763_50457164
ENSMUSG00000032067.7_0	chr9	-	2799	3	ISM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	1920	1	-904	0	intron_retention	FALSE	canonical	3	124	junction_1	9	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGTTTTCAGGATTTAT	9879	False	NA	NA	False	AATAAA	-17	NA	50438031	50432917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_50433637_50433828_50433900_50436022
ENSMUSG00000032067.7_11	chr9	-	181	1	FSM	ENSMUSG00000032067.7	ENSMUST00000217146.2	4211	1	3951	79	3951	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAATAATTTCATTTG	NA	False	NA	NA	False	NA	NA	NA	50433176	50432995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50433000_50433200
ENSMUSG00000032067.7_3	chr9	-	1051	6	FSM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	-10	5	-3	-4	multi-exon	FALSE	canonical	3	95	junction_5	16.1294761229248	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACCTCGTTTTCAGGAT	7949	False	NA	NA	False	AATAAA	-13	NA	50439961	50432921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439856
ENSMUSG00000032067.7_4	chr9	-	787	2	ISM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	6055	1	3231	0	3prime_fragment	FALSE	canonical	3	124	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGTTTTCAGGATTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	50433896	50432917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_50433637_50433828
ENSMUSG00000032067.7_6	chr9	-	3138	4	NIC	ENSMUSG00000032067.7	novel	1046	6	NA	NA	1	0	intron_retention	FALSE	canonical	3	122	junction_3	8.99382504215469	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGTTTTCAGGATTTAT	7955	False	NA	NA	False	AATAAA	-17	NA	50439955	50432917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_50433637_50433828_50433900_50436022_50436585_50438169
ENSMUSG00000032067.7_8	chr9	-	1130	7	NIC	ENSMUSG00000032067.7	novel	589	7	NA	NA	-2	-4	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	39.4574313518872	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACCTCGTTTTCAGGAT	7957	False	NA	NA	False	AATAAA	-13	NA	50439953	50432921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439445_50439533_50439856
ENSMUSG00000032068.15_0	chr9	+	1332	4	FSM	ENSMUSG00000032068.15	ENSMUST00000114474.8	1689	4	5	352	3	-352	multi-exon	FALSE	canonical	3	38	junction_1	3.39934634239519	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAGAATACCGAAATGTG	NA	False	NA	NA	False	AATAAA	-11	NA	50405829	50416430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_50406047_50410394_50410600_50412372_50412429_50415576
ENSMUSG00000032076.21_29	chr9	+	1972	1	ISM	ENSMUSG00000032076.21	ENSMUST00000114548.8	4482	10	321235	6	321035	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGATCCTTTAAATCTCT	NA	False	NA	11	True	AATAAA	-15	NA	47762705	47764677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_47762700_47764700
ENSMUSG00000032076.21_32	chr9	+	2000	10	NNC	ENSMUSG00000032076.21	novel	2126	11	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	109.488710732101	169	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	47441651	47762327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_47441806_47699266_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47759464_47759597_47761569
ENSMUSG00000032076.21_33	chr9	+	2033	11	NNC	ENSMUSG00000032076.21	novel	2126	11	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.765647674051	139	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	47441651	47762327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_47441806_47699266_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674_47740708_47759464_47759597_47761569
ENSMUSG00000032076.21_37	chr9	+	1456	9	NNC	ENSMUSG00000032076.21	novel	2126	11	NA	NA	2	-4726	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.491031029406	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTAAAAATGTAAAGTGTA	NA	False	NA	NA	False	AATAAA	-21	NA	47441651	47741020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_47441806_47699266_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674
ENSMUSG00000032077.6_0	chr9	+	2199	10	FSM	ENSMUSG00000032077.6	ENSMUST00000074957.5	2539	10	9	331	9	-4	multi-exon	FALSE	canonical	3	99	junction_1	15.5737988261228	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCATTTCCTAACTGGG	NA	False	NA	41	True	AATAAA	-18	NA	46194314	46210077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_46194472_46197640_46197732_46198314_46198400_46198959_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
ENSMUSG00000032078.18_0	chr9	+	1838	14	FSM	ENSMUSG00000032078.18	ENSMUST00000156440.8	2984	14	104	1042	-25	117	multi-exon	FALSE	canonical	3	619	junction_8	51.2505159448701	893	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCCGCCTCTGCGTTCAT	NA	False	NA	11	True	ATTAAA	-18	NA	46184465	46192899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187152_46187497_46187546_46187709_46187777_46188089_46188161_46188943_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
ENSMUSG00000032083.9_0	chr9	+	863	3	FSM	ENSMUSG00000032083.9	ENSMUST00000132155.2	602	3	223	-484	223	-9	multi-exon	FALSE	canonical	1	1	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGAATAGCTTCTTTC	NA	False	NA	NA	False	AATAAA	-8	NA	46140241	46141755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_46140298_46140413_46140568_46141102
ENSMUSG00000032086.13_0	chr9	+	3877	9	FSM	ENSMUSG00000032086.13	ENSMUST00000034591.11	6058	9	1	2180	1	0	multi-exon	FALSE	canonical	3	11	junction_1	5.43139024560011	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	7299	False	NA	NA	False	NA	NA	NA	45749878	45773517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_45750587_45764185_45764275_45765924_45766142_45767385_45767524_45768411_45768547_45769697_45769800_45770207_45770358_45770576_45770749_45771351
ENSMUSG00000032086.13_2	chr9	+	3684	9	NIC	ENSMUSG00000032086.13	novel	6058	9	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	7.80924932371864	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGGCAAAAAAAAAAAAAAA	7299	False	NA	NA	False	NA	NA	NA	45749878	45773512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_45750587_45764185_45764275_45765924_45765954_45767385_45767524_45768411_45768547_45769697_45769800_45770207_45770358_45770576_45770749_45771351
ENSMUSG00000032086.13_4	chr9	+	2909	9	NIC	ENSMUSG00000032086.13	novel	3146	8	NA	NA	-25	-222	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	8.98523093748847	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCCAGCTGGGTCCTCT	8611	False	NA	NA	False	AATAAA	-19	NA	45751190	45773295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_45751341_45764185_45764275_45765924_45765954_45767385_45767524_45768411_45768547_45769697_45769800_45770207_45770358_45770576_45770749_45771351
ENSMUSG00000032086.13_7	chr9	+	3143	1	ISM	ENSMUSG00000032086.13	ENSMUST00000034591.11	6058	9	22675	2	6628	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAAACTATCAGAGTTAC	NA	False	NA	NA	False	AGTAAA	-11	NA	45772552	45775695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_45772600_45775700
ENSMUSG00000032086.13_9	chr9	+	5116	8	ISM	ENSMUSG00000032086.13	ENSMUST00000034591.11	6058	9	12359	2182	-1784	-2	3prime_fragment	FALSE	canonical	3	12	junction_1	4.82341229032404	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45762236	45773515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_45764275_45765924_45766142_45767385_45767524_45768411_45768547_45769697_45769800_45770207_45770358_45770576_45770749_45771351
ENSMUSG00000032087.12_0	chr9	+	1658	7	NNC	ENSMUSG00000032087.12	novel	6436	33	NA	NA	48	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.98142396999972	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATCAGAATAGGCTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	45341638	45584236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_45341811_45358962_45359281_45361779_45361927_45572424_45572578_45579286_45579566_45581293_45581570_45583923
ENSMUSG00000032092.6_2	chr9	+	2916	6	FSM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	182	9	-89	-9	multi-exon	FALSE	canonical	3	426	junction_5	54.042205728486	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGAACTATGATTTTT	NA	False	NA	6	True	AATAAA	-9	NA	44953904	44965304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
ENSMUSG00000032092.6_25	chr9	+	1351	1	ISM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	10231	9	9960	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGAACTATGATTTTT	NA	False	NA	6	True	AATAAA	-9	NA	44963953	44965304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44964000_44965300
ENSMUSG00000032093.8_0	chr9	-	1488	8	FSM	ENSMUSG00000032093.8	ENSMUST00000102832.3	1462	8	-28	2	-14	-2	multi-exon	FALSE	canonical	2	5	junction_4	3.13635691430002	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTATGTCTCTTTTCTT	4723	False	NA	NA	False	AATAAA	-15	NA	44920939	44910039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44910886_44911732_44911780_44912276_44912445_44913435_44913652_44916809_44916825_44918473_44918492_44920645_44920748_44920863
ENSMUSG00000032096.17_0	chr9	-	3457	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	32	583	-15	-583	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	1863	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAGATGTTTACTGGA	NA	False	NA	-24	True	AATAAA	-11	NA	44679110	44653443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
ENSMUSG00000032097.11_10	chr9	+	2811	14	FSM	ENSMUSG00000032097.11	ENSMUST00000217034.2	6029	14	-22	3240	-18	-3240	multi-exon	FALSE	canonical	3	13	junction_1	7.66070431047592	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATATATATATACATACA	NA	False	NA	NA	False	NA	NA	NA	44516170	44548788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44516250_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
ENSMUSG00000032097.11_12	chr9	+	931	1	ISM	ENSMUSG00000032097.11	ENSMUST00000170489.2	6065	14	31663	3246	31658	-3246	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATAAATATATATATATA	NA	False	NA	NA	False	TATAAA	-45	NA	44547851	44548782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44547900_44548800
ENSMUSG00000032097.11_13	chr9	+	843	1	ISM	ENSMUSG00000032097.11	ENSMUST00000170489.2	6065	14	34996	1	34991	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTCTTGTATGTATGTT	NA	False	NA	16	True	AATAAA	-17	NA	44551184	44552027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44551200_44552000
ENSMUSG00000032097.11_6	chr9	+	2796	14	NNC	ENSMUSG00000032097.11	novel	6065	14	NA	NA	-28	-3240	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	7.66070431047592	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATATATATATACATACA	NA	False	NA	NA	False	NA	NA	NA	44516160	44548788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_44516225_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
ENSMUSG00000032101.7_1	chr9	-	1654	12	FSM	ENSMUSG00000032101.7	ENSMUST00000034612.7	6934	12	74	5206	74	-5206	multi-exon	FALSE	canonical	3	22	junction_11	3.32533475603125	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGAGACCTGAGGGCTCT	NA	False	NA	NA	False	AATAAA	-17	NA	35469750	35453148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_35453356_35454893_35455083_35457109_35457273_35458076_35458315_35462580_35462759_35464132_35464248_35465602_35465706_35465812_35465906_35468061_35468198_35468677_35468726_35468980_35469048_35469633
ENSMUSG00000032103.11_0	chr9	+	1731	4	FSM	ENSMUSG00000032103.11	ENSMUST00000034615.10	2019	4	25	263	19	0	multi-exon	FALSE	canonical	3	88	junction_3	6.68331255192114	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATATTTGTTCTTTTTC	NA	False	NA	12	True	ATTAAA	-12	NA	35470780	35478434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_35470814_35476079_35476494_35476585_35477152_35477716
ENSMUSG00000032103.11_1	chr9	+	1822	3	ISM	ENSMUSG00000032103.11	ENSMUST00000135768.2	2144	4	891	0	20	0	3prime_fragment	FALSE	canonical	3	88	junction_2	8	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATATTTGTTCTTTTTC	NA	False	NA	12	True	ATTAAA	-12	NA	35470781	35478434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_35470814_35476079_35477152_35477716
ENSMUSG00000032103.11_3	chr9	+	1702	3	ISM	ENSMUSG00000032103.11	ENSMUST00000034615.10	2019	4	5322	261	5316	2	3prime_fragment	FALSE	canonical	3	88	junction_2	5.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATTTGTTCTTTTTCAA	NA	False	NA	14	True	ATTAAA	-14	NA	35476077	35478436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_35476494_35476585_35477152_35477716
ENSMUSG00000032103.11_4	chr9	+	1746	2	ISM	ENSMUSG00000032103.11	ENSMUST00000135768.2	2144	4	6236	-3	5365	3	3prime_fragment	FALSE	canonical	3	88	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTGTTCTTTTTCAAG	NA	False	NA	15	True	ATTAAA	-15	NA	35476126	35478437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_35477152_35477716
ENSMUSG00000032103.11_6	chr9	+	2312	3	FSM	ENSMUSG00000032103.11	ENSMUST00000121246.2	2016	3	3	-299	3	0	multi-exon	FALSE	canonical	3	99	junction_2	2.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATATTTGTTCTTTTTC	NA	False	NA	12	True	ATTAAA	-12	NA	35470764	35478434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_35470814_35476079_35476494_35476585
ENSMUSG00000032109.16_0	chr9	-	3673	10	NIC	ENSMUSG00000032109.16	novel	3621	10	NA	NA	15	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_4	2.49443825784929	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCTGTGGTCTCCACTTC	5930	False	NA	NA	False	ATTAAA	-17	NA	44179469	44164014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44164837_44165288_44165541_44166727_44166815_44167628_44168225_44173528_44174351_44174925_44175546_44175999_44176089_44176460_44176531_44177040_44177163_44179276
ENSMUSG00000032112.11_2	chr9	-	967	5	FSM	ENSMUSG00000032112.11	ENSMUST00000034623.8	1220	5	251	2	2	0	multi-exon	FALSE	canonical	3	556	junction_4	135.857462069626	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTTCTCTCCTAACTG	1724	False	NA	-10	True	AATAAA	-15	NA	44318646	44315057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100_44318276_44318423
ENSMUSG00000032112.11_3	chr9	-	825	4	FSM	ENSMUSG00000032112.11	ENSMUST00000213747.2	935	4	47	63	-17	0	multi-exon	FALSE	canonical	3	851	junction_3	13.0213499897497	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTTCTCTCCTAACTG	2014	False	NA	-10	True	AATAAA	-15	NA	44318356	44315057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100
ENSMUSG00000032113.17_1	chr9	-	2378	13	FSM	ENSMUSG00000032113.17	ENSMUST00000034625.12	3397	13	58	961	-15	-3	multi-exon	FALSE	canonical	3	297	junction_12	54.0685650098301	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGATTGGGGTCCTGTAT	706	False	NA	NA	False	ATTAAA	-9	NA	36637896	36620738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
ENSMUSG00000032113.17_5	chr9	-	2157	12	FSM	ENSMUSG00000032113.17	ENSMUST00000174105.8	2142	12	-16	1	-16	-1	multi-exon	FALSE	canonical	3	20	junction_10	131.27033490643	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATTGGGGTCCTGTATTC	705	False	NA	NA	False	ATTAAA	-11	NA	36637897	36620736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36637092_36637175_36637858
ENSMUSG00000032113.17_8	chr9	-	2654	12	FSM	ENSMUSG00000032113.17	ENSMUST00000172702.9	3797	12	179	964	179	-6	multi-exon	FALSE	canonical	3	367	junction_7	38.0821209215597	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATATGATTGGGGTCCTG	1111	False	NA	NA	False	ATTAAA	-6	NA	36637491	36620741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092
ENSMUSG00000032114.10_0	chr9	+	2090	9	FSM	ENSMUSG00000032114.10	ENSMUST00000215420.2	2128	9	38	0	38	0	multi-exon	FALSE	canonical	1	5	junction_1	8.7740740252177	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAACAGTCAGTGGCTCA	NA	False	NA	NA	False	AATAAA	-13	NA	44308186	44314257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44308289_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
ENSMUSG00000032114.10_1	chr9	+	2358	9	NIC	ENSMUSG00000032114.10	novel	2344	9	NA	NA	7	2	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	8.7740740252177	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACAGTCAGTGGCTCATC	NA	False	NA	NA	False	AATAAA	-15	NA	44308402	44314259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_44308771_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
ENSMUSG00000032114.10_2	chr9	+	3159	8	FSM	ENSMUSG00000032114.10	ENSMUST00000165839.3	2086	8	-1076	3	1	3	multi-exon	FALSE	canonical	3	14	junction_1	6.22044030202207	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCAGTGGCTCATCC	NA	False	NA	NA	False	AATAAA	-16	NA	44308396	44314260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
ENSMUSG00000032114.10_4	chr9	+	2338	9	FSM	ENSMUSG00000032114.10	ENSMUST00000213388.2	2344	9	0	6	0	2	multi-exon	FALSE	canonical	2	2	junction_1	9.53939201416946	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACAGTCAGTGGCTCATC	NA	False	NA	NA	False	AATAAA	-15	NA	44308395	44314259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44308744_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
ENSMUSG00000032115.15_0	chr9	+	4352	26	FSM	ENSMUSG00000032115.15	ENSMUST00000066601.13	4432	26	70	10	3	-4	multi-exon	TRUE	canonical	3	476	junction_1	89.8853847964173	1101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGTTGTATGTGTTTGCT	NA	False	NA	-3	True	AATAAA	-13	NA	44290856	44303656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
ENSMUSG00000032115.15_13	chr9	+	4452	26	FSM	ENSMUSG00000032115.15	ENSMUST00000161318.8	4489	26	33	4	-17	-4	multi-exon	FALSE	canonical	3	92	junction_1	153.155429547894	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGTTGTATGTGTTTGCT	NA	False	NA	-3	True	AATAAA	-13	NA	44290902	44303656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44291039_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
ENSMUSG00000032115.15_39	chr9	+	4648	26	FSM	ENSMUSG00000032115.15	ENSMUST00000160902.8	3374	26	-17	-1257	-17	-4	multi-exon	FALSE	canonical	3	130	junction_1	146.389890361322	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGTTGTATGTGTTTGCT	NA	False	NA	-3	True	AATAAA	-13	NA	44290902	44303656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44291235_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
ENSMUSG00000032115.15_43	chr9	+	4388	26	NIC	ENSMUSG00000032115.15	novel	4489	26	NA	NA	-18	-4	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	163.052806170271	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGTTGTATGTGTTTGCT	NA	False	NA	-3	True	AATAAA	-13	NA	44290901	44303656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_44290974_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
ENSMUSG00000032115.15_72	chr9	+	4318	25	ISM	ENSMUSG00000032115.15	ENSMUST00000161318.8	4489	26	938	4	-18	-4	3prime_fragment	FALSE	canonical	3	624	junction_12	63.8389357854767	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGTTGTATGTGTTTGCT	NA	False	NA	-3	True	AATAAA	-13	NA	44291807	44303656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
ENSMUSG00000032116.19_3	chr9	-	2709	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	70	3088	0	-6	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	2803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTCTGGGACCA	NA	False	NA	-25	True	NA	NA	NA	36678905	36643727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
ENSMUSG00000032116.19_4	chr9	-	2651	17	ISM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	2497	3088	2168	-6	3prime_fragment	FALSE	canonical	3	1637	junction_6	108.188420706654	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTCTGGGACCA	NA	False	NA	-25	True	NA	NA	NA	36676478	36643727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349
ENSMUSG00000032118.17_1	chr9	+	1701	10	FSM	ENSMUSG00000032118.17	ENSMUST00000034630.15	1794	10	89	4	9	0	multi-exon	FALSE	canonical	3	83	junction_5	5.61743318211757	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTCTTCATGGTTTTTG	NA	False	NA	14	True	AATAAA	-14	NA	36744068	36790216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_36744208_36754957_36755314_36761642_36761743_36772107_36772195_36774792_36774962_36778991_36779264_36780143_36780225_36781776_36781853_36787592_36787659_36789861
ENSMUSG00000032118.17_4	chr9	+	1696	10	NIC	ENSMUSG00000032118.17	novel	1794	10	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	29.7470820230975	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAATATTCTTCATGGTT	NA	False	NA	10	True	AATAAA	-10	NA	36744061	36790212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_36744208_36754965_36755314_36761642_36761743_36772107_36772195_36774792_36774962_36778991_36779264_36780143_36780225_36781776_36781853_36787592_36787659_36789861
ENSMUSG00000032119.6_12	chr9	-	2261	10	FSM	ENSMUSG00000032119.6	ENSMUST00000034629.6	1439	10	-2	-820	-2	433	multi-exon	FALSE	canonical	0	0	junction_9	17.1399468429099	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTATTTCTTAAGTTTGAT	NA	False	NA	-4	True	AATAAA	-19	NA	44216945	44206970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44214070_44216912
ENSMUSG00000032119.6_2	chr9	-	5251	9	ISM	ENSMUSG00000032119.6	ENSMUST00000216508.2	5333	10	3082	28	3056	-28	3prime_fragment	FALSE	canonical	3	40	junction_7	6.44204936336256	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCTTGATTAAATTATT	NA	False	NA	-30	True	NA	NA	NA	44213886	44203764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706
ENSMUSG00000032119.6_20	chr9	-	3993	8	ISM	ENSMUSG00000032119.6	ENSMUST00000216508.2	5333	10	5992	993	-221	-993	3prime_fragment	FALSE	canonical	3	40	junction_7	6.6944997222057	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGACTGGAATAAATGAAGA	NA	False	NA	NA	False	AATAAA	-7	NA	44210976	44204729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859
ENSMUSG00000032119.6_25	chr9	-	3536	1	FSM	ENSMUSG00000111291.2	ENSMUST00000217413.2	2420	1	-3513	2397	-3513	-2397	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGAGTGTGGTGGTGC	NA	False	NA	-3	True	NA	NA	NA	44207273	44203737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44203700_44207300
ENSMUSG00000032119.6_3	chr9	-	5463	11	NNC	ENSMUSG00000032119.6	novel	5333	10	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	19.8859246704799	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGAGTGTGGTGGTGC	NA	False	NA	-3	True	NA	NA	NA	44216934	44203737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216078_44216244_44216912
ENSMUSG00000032119.6_4	chr9	-	5304	10	FSM	ENSMUSG00000032119.6	ENSMUST00000216508.2	5333	10	27	2	1	-2	multi-exon	FALSE	canonical	3	40	junction_7	6.83852557930183	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGACTTGAGTGTGGTGGTG	NA	False	NA	-4	True	NA	NA	NA	44216941	44203738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216912
ENSMUSG00000032119.6_6	chr9	-	5764	10	NNC	ENSMUSG00000032119.6	novel	5333	10	NA	NA	23	-1	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_9	14.5296631451356	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGAGTGTGGTGGTGC	NA	False	NA	-3	True	NA	NA	NA	44216919	44203737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216431
ENSMUSG00000032120.12_0	chr9	-	3353	14	FSM	ENSMUSG00000032120.12	ENSMUST00000065080.10	4337	14	5	979	5	-5	multi-exon	FALSE	canonical	3	36	junction_2	6.29548537403388	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACGGGAGTGGCTGGTT	5320	False	NA	NA	False	NA	NA	NA	44231577	44221512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44222565_44224802_44225089_44225174_44225309_44225451_44225554_44226176_44226352_44226443_44226572_44226660_44226726_44227402_44227512_44227602_44227715_44227807_44227925_44228004_44228116_44228296_44228417_44228879_44228976_44230831
ENSMUSG00000032120.12_1	chr9	-	3327	14	NIC	ENSMUSG00000032120.12	novel	4337	14	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	10.0701680236066	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACGGGAGTGGCTGGTT	5349	False	NA	NA	False	NA	NA	NA	44231548	44221512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44222565_44224802_44225089_44225174_44225312_44225451_44225554_44226176_44226352_44226443_44226572_44226660_44226726_44227402_44227512_44227602_44227715_44227807_44227925_44228004_44228116_44228296_44228417_44228879_44228976_44230831
ENSMUSG00000032120.12_10	chr9	-	2835	13	FSM	ENSMUSG00000032120.12	ENSMUST00000214602.2	2808	13	-27	0	6	0	multi-exon	FALSE	canonical	3	36	junction_1	6.46947962873883	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATTTATTACATTTAT	5321	False	NA	NA	False	NA	NA	NA	44231576	44224267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44225089_44225174_44225309_44225451_44225554_44226176_44226352_44226443_44226572_44226660_44226726_44227402_44227512_44227602_44227715_44227807_44227925_44228004_44228116_44228296_44228417_44228879_44228976_44230831
ENSMUSG00000032120.12_14	chr9	-	2371	11	ISM	ENSMUSG00000032120.12	ENSMUST00000065080.10	4337	14	3486	980	74	-6	3prime_fragment	FALSE	canonical	3	36	junction_2	6.51843539509291	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAACGGGAGTGGCTGGT	8801	False	NA	NA	False	NA	NA	NA	44228096	44221513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44222565_44224802_44225089_44225174_44225309_44225451_44225554_44226176_44226352_44226443_44226572_44226660_44226726_44227402_44227512_44227602_44227715_44227807_44227925_44228004
ENSMUSG00000032121.10_0	chr9	+	1012	4	FSM	ENSMUSG00000032121.10	ENSMUST00000034632.10	2619	4	103	1504	103	-1504	multi-exon	FALSE	canonical	3	46	junction_1	7.40870359029762	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCCTGGCTGCAGCTTT	NA	False	NA	27	True	AATAAA	-33	NA	37119621	37134492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_37119702_37129561_37129673_37130497_37130601_37133774
ENSMUSG00000032121.10_2	chr9	+	651	1	ISM	ENSMUSG00000032121.10	ENSMUST00000034632.10	2619	4	14323	1504	14323	-1504	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCCTGGCTGCAGCTTT	NA	False	NA	27	True	AATAAA	-33	NA	37133841	37134492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_37133800_37134500
ENSMUSG00000032122.16_0	chr9	-	2618	18	FSM	ENSMUSG00000032122.16	ENSMUST00000115068.10	5943	18	325	3000	1	-73	multi-exon	FALSE	canonical	3	62	junction_1	7.12469267230106	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCTTATCCTTGGTAGG	NA	False	NA	1	True	AATACA	-22	NA	37166709	37141880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_37142953_37144605_37144671_37144915_37145014_37145137_37145217_37145453_37145528_37145688_37145738_37146380_37146467_37146776_37146840_37148174_37148266_37148595_37148749_37149032_37149071_37149511_37149679_37150426_37150504_37150914_37151051_37152387_37152467_37152584_37152679_37153174_37153257_37166594
ENSMUSG00000032122.16_11	chr9	-	4259	17	NIC	ENSMUSG00000032122.16	novel	2945	19	NA	NA	5	-81	intron_retention	FALSE	canonical	3	62	junction_13	6.96307223860273	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGCCACTGCTTATCC	NA	False	NA	-7	True	AATACA	-14	NA	37166705	37141888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_37144671_37144915_37145014_37145137_37145217_37145453_37145528_37145688_37145738_37146380_37146467_37146776_37146840_37148174_37148266_37148595_37148749_37149032_37149071_37149511_37149679_37150426_37150504_37150914_37151051_37152387_37152467_37152584_37152679_37153174_37153257_37166594
ENSMUSG00000032123.6_0	chr9	+	1870	9	FSM	ENSMUSG00000032123.6	ENSMUST00000054708.5	2205	9	35	300	7	-294	multi-exon	FALSE	canonical	3	223	junction_1	28.7920887571569	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTAGTGTAGCATCCCCT	3809	False	NA	17	True	AATAAA	-20	NA	44238176	44244897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ENSMUSG00000032123.6_15	chr9	+	1539	8	ISM	ENSMUSG00000032123.6	ENSMUST00000054708.5	2205	9	712	300	-426	-294	3prime_fragment	FALSE	canonical	3	234	junction_1	26.2880433750745	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTAGTGTAGCATCCCCT	4486	False	NA	17	True	AATAAA	-20	NA	44238853	44244897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ENSMUSG00000032123.6_2	chr9	+	1867	10	NIC	ENSMUSG00000032123.6	novel	2205	9	NA	NA	3	-297	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	85.6912344077327	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCTAGTGTAGCATCC	3483	False	NA	14	True	AATAAA	-17	NA	44237850	44244894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_44238117_44238442_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ENSMUSG00000032123.6_7	chr9	+	1768	8	FSM	ENSMUSG00000032123.6	ENSMUST00000215050.2	2050	8	-13	295	-13	-295	multi-exon	FALSE	canonical	3	5	junction_1	96.7247303919104	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTAGTGTAGCATCCCC	3789	False	NA	16	True	AATAAA	-19	NA	44238156	44244896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44238503_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ENSMUSG00000032125.22_0	chr9	+	3732	18	FSM	ENSMUSG00000032125.22	ENSMUST00000214185.3	4952	18	116	1104	-19	-8	multi-exon	FALSE	canonical	0	0	junction_2	1.10988013318313	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAAAGACGAGTTCTGTG	NA	False	NA	NA	False	TATAAA	-2	NA	37313308	37325307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_37313448_37313850_37314184_37314447_37314606_37314738_37314860_37315369_37315498_37315588_37315818_37316066_37316180_37316868_37317038_37317193_37317380_37317484_37317528_37319233_37319371_37319468_37319733_37321677_37321786_37321974_37322135_37322275_37322519_37322640_37323000_37324324_37324532_37324672
ENSMUSG00000032125.22_1	chr9	+	3707	18	FSM	ENSMUSG00000032125.22	ENSMUST00000239486.2	3689	18	-25	7	-11	-4	multi-exon	FALSE	canonical	0	0	junction_2	1.08465228909328	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACGAGTTCTGTGACAT	NA	False	NA	NA	False	TATAAA	-6	NA	37313316	37325311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_37313448_37313850_37314184_37314447_37314606_37314738_37314860_37315369_37315498_37315588_37315818_37316066_37316180_37316868_37317038_37317193_37317380_37317484_37317528_37319233_37319371_37319468_37319733_37321677_37321786_37321995_37322135_37322275_37322519_37322640_37323000_37324324_37324532_37324672
ENSMUSG00000032126.17_2	chr9	-	1545	14	FSM	ENSMUSG00000032126.17	ENSMUST00000077353.15	1605	14	48	12	48	1	multi-exon	FALSE	canonical	3	699	junction_4	86.0870620274656	689	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGAGTCTGAGACCTTT	1456	False	NA	-3	True	AATAAA	-21	NA	44255477	44247647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
ENSMUSG00000032127.10_0	chr9	-	3157	16	FSM	ENSMUSG00000032127.10	ENSMUST00000034644.10	3536	16	27	352	1	-173	multi-exon	FALSE	canonical	0	0	junction_10	77.9168787875901	428	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAAGACTTTATGGAGA	6405	False	NA	-34	True	AATAAA	-20	NA	44272940	44259397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272741
ENSMUSG00000032131.17_0	chr9	-	3570	15	FSM	ENSMUSG00000032131.17	ENSMUST00000161354.9	3999	15	425	4	-52	-4	multi-exon	FALSE	canonical	0	0	junction_2	1.34202101628971	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATGCAGGGTGTGAATGT	NA	False	NA	NA	False	AATAAA	-15	NA	44199487	44184488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44186155_44186312_44186432_44186546_44186706_44188754_44188856_44188954_44189124_44189328_44189428_44190268_44190412_44190599_44190715_44190831_44190956_44192378_44192525_44192693_44192745_44192855_44192989_44193100_44193219_44198512_44198763_44199310
ENSMUSG00000032131.17_2	chr9	-	3463	14	FSM	ENSMUSG00000032131.17	ENSMUST00000034648.16	3476	14	12	1	4	-1	multi-exon	TRUE	canonical	0	0	junction_2	1.38888231425137	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGGGTGTGAATGTCGA	NA	False	NA	NA	False	AATAAA	-18	NA	44198829	44184485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44186155_44186312_44186432_44186546_44186706_44188754_44188856_44188954_44189124_44189328_44189428_44190268_44190412_44190599_44190715_44190831_44190956_44192378_44192525_44192693_44192745_44192855_44192989_44193100_44193219_44198512
ENSMUSG00000032135.16_0	chr9	+	2880	16	FSM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	99	10	0	-7	multi-exon	FALSE	canonical	3	21	junction_3	5.20085463062456	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAAGCATGATGCTGTG	7	False	NA	9	True	AATAAA	-11	NA	44045957	44054014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44046054_44047814_44047946_44048034_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
ENSMUSG00000032135.16_10	chr9	+	2069	10	ISM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	4633	10	2334	-7	3prime_fragment	FALSE	canonical	3	29	junction_2	3.39934634239519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAAGCATGATGCTGTG	2513	False	NA	9	True	AATAAA	-11	NA	44050491	44054014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
ENSMUSG00000032135.16_11	chr9	+	1967	9	ISM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	4844	21	2545	-18	3prime_fragment	FALSE	canonical	3	29	junction_1	3.46410161513775	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTTATTGTTCCAAAAGC	2724	False	NA	-2	True	NA	NA	NA	44050702	44054003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
ENSMUSG00000032135.16_12	chr9	+	838	1	ISM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	7318	10	5019	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAAGCATGATGCTGTG	5198	False	NA	9	True	AATAAA	-11	NA	44053176	44054014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44053200_44054000
ENSMUSG00000032135.16_3	chr9	+	2962	16	NIC	ENSMUSG00000032135.16	novel	1061	7	NA	NA	437	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	8.87543426167606	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAAGCATGATGCTGTG	444	False	NA	9	True	AATAAA	-11	NA	44046394	44054014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_44046573_44047814_44047946_44048034_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
ENSMUSG00000032135.16_7	chr9	+	2757	15	ISM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	1983	10	1	-7	3prime_fragment	FALSE	canonical	3	21	junction_2	5.10901564064219	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAAGCATGATGCTGTG	215	False	NA	9	True	AATAAA	-11	NA	44047841	44054014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44047946_44048034_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
ENSMUSG00000032135.16_9	chr9	+	2605	14	ISM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	2224	10	-75	-7	3prime_fragment	FALSE	canonical	3	21	junction_1	4.83331632997077	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAAGCATGATGCTGTG	104	False	NA	9	True	AATAAA	-11	NA	44048082	44054014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
ENSMUSG00000032171.8_0	chr9	+	917	4	FSM	ENSMUSG00000032171.8	ENSMUST00000034689.8	3843	4	31	2895	31	-2895	multi-exon	FALSE	canonical	3	2626	junction_2	73.4892282356174	1030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGGTGGTCCTGTATCA	NA	False	NA	22	True	ATTAAA	-12	NA	20563421	20574985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_20563494_20566657_20566877_20573593_20573705_20574470
ENSMUSG00000032171.8_1	chr9	+	4075	3	NIC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	37	-2895	intron_retention	FALSE	canonical	3	2626	junction_1	89.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGGTGGTCCTGTATCA	NA	False	NA	22	True	ATTAAA	-12	NA	20563427	20574985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_20566877_20573593_20573705_20574470
ENSMUSG00000032172.9_0	chr9	-	1803	6	FSM	ENSMUSG00000032172.9	ENSMUST00000215999.2	1895	6	88	4	88	-1	multi-exon	FALSE	canonical	3	29	junction_1	2.92574776766556	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGGTGCCTGGGTTGTTT	NA	False	NA	-7	True	AATAAA	-14	NA	20657557	20578992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20580081_20582995_20583103_20583430_20583651_20583922_20584070_20586869_20587020_20657466
ENSMUSG00000032172.9_1	chr9	-	1421	3	ISM	ENSMUSG00000032172.9	ENSMUST00000217198.2	2005	6	54583	-5	777	-1	3prime_fragment	FALSE	canonical	3	29	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGGTTGTTTTGTAGC	1096	False	NA	-1	True	AATAAA	-20	NA	20583650	20578986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20580081_20582995_20583103_20583430
ENSMUSG00000032175.12_0	chr9	-	4739	25	FSM	ENSMUSG00000032175.12	ENSMUST00000214454.2	4770	25	30	1	19	-1	multi-exon	FALSE	canonical	3	60	junction_24	14.2647949512077	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTTGCTTGCA	NA	False	NA	-5	True	NA	NA	NA	21042509	21015366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21016480_21016559_21016671_21018778_21018897_21019160_21019334_21020069_21020189_21020530_21020724_21021429_21021528_21021747_21021899_21022301_21022457_21022540_21022677_21025488_21025617_21026487_21026576_21026667_21026845_21026939_21027044_21027130_21027327_21027428_21027538_21031555_21031714_21031798_21032000_21032687_21033055_21035272_21035437_21035706_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
ENSMUSG00000032175.12_48	chr9	-	1945	8	ISM	ENSMUSG00000032175.12	ENSMUST00000214454.2	4770	25	2532	15773	-1365	3616	internal_fragment	FALSE	canonical	3	64	junction_4	17.9193203223874	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATATTTATTTAT	NA	False	NA	NA	False	ATTAAA	-13	NA	21040007	21031138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21031714_21031798_21032000_21032687_21033055_21035272_21035437_21035706_21035855_21036159_21036278_21038419_21038640_21039855
ENSMUSG00000032175.12_6	chr9	-	3794	19	ISM	ENSMUSG00000032175.12	ENSMUST00000001036.11	4619	23	5690	1	5690	0	3prime_fragment	FALSE	canonical	3	73	junction_18	10.7163196188262	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGTGTTGCTTGCAT	4833	False	NA	-4	True	NA	NA	NA	21032952	21015365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21016480_21016559_21016671_21018778_21018897_21019160_21019334_21020069_21020189_21020530_21020724_21021429_21021528_21021747_21021899_21022301_21022457_21022540_21022677_21025488_21025617_21026487_21026576_21026667_21026845_21026939_21027044_21027130_21027327_21027428_21027538_21031555_21031714_21031798_21032000_21032687
ENSMUSG00000032175.12_7	chr9	-	4699	24	ISM	ENSMUSG00000032175.12	ENSMUST00000214454.2	4770	25	2531	0	-1366	0	3prime_fragment	FALSE	canonical	3	64	junction_20	13.2590875495451	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGTGTTGCTTGCAT	NA	False	NA	-4	True	NA	NA	NA	21040008	21015365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21016480_21016559_21016671_21018778_21018897_21019160_21019334_21020069_21020189_21020530_21020724_21021429_21021528_21021747_21021899_21022301_21022457_21022540_21022677_21025488_21025617_21026487_21026576_21026667_21026845_21026939_21027044_21027130_21027327_21027428_21027538_21031555_21031714_21031798_21032000_21032687_21033055_21035272_21035437_21035706_21035855_21036159_21036278_21038419_21038640_21039855
ENSMUSG00000032177.18_0	chr9	+	3912	15	NIC	ENSMUSG00000032177.18	novel	3594	14	NA	NA	-2	-429	combination_of_known_junctions	FALSE	canonical	3	11	junction_11	5.62429133857986	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGACAAAAGGAGACAGTGAA	1162	False	NA	2	True	TATAAA	-12	NA	21092909	21124115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21093117_21102622_21102815_21103690_21103728_21103815_21103887_21105870_21105921_21106041_21106155_21109888_21109983_21112516_21112714_21114493_21114593_21114683_21114849_21115619_21115720_21116265_21116421_21116586_21116710_21117440_21117624_21121989
ENSMUSG00000032177.18_17	chr9	+	4093	10	FSM	ENSMUSG00000032177.18	ENSMUST00000003395.10	2524	10	49	-1618	49	-3	multi-exon	FALSE	canonical	0	0	junction_1	9.29090887127416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCATTTGTTTCCTGGG	NA	False	NA	3	True	ATTAAA	-44	NA	21108049	21124541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21108475_21109888_21109983_21112516_21112714_21114493_21114593_21114683_21114849_21115619_21115720_21116265_21116421_21116586_21116710_21117440_21117624_21121989
ENSMUSG00000032177.18_7	chr9	+	2784	4	ISM	ENSMUSG00000032177.18	ENSMUST00000003395.10	2524	10	8062	-1186	8062	-435	3prime_fragment	FALSE	canonical	3	21	junction_2	2.62466929133727	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACTGAGACAAAAGGAGAC	NA	False	NA	-4	True	TATAAA	-6	NA	21116062	21124109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_21116421_21116586_21116710_21117440_21117624_21121989
ENSMUSG00000032177.18_8	chr9	+	2437	3	ISM	ENSMUSG00000032177.18	ENSMUST00000003395.10	2524	10	8585	-1196	8585	-425	3prime_fragment	FALSE	canonical	3	21	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGAGACAGTGAACTTG	NA	False	NA	6	True	TATAAA	-16	NA	21116585	21124119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_21116710_21117440_21117624_21121989
ENSMUSG00000032177.18_9	chr9	+	1725	1	ISM	ENSMUSG00000032177.18	ENSMUST00000039413.15	4653	15	45383	427	14392	-427	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAGGAGACAGTGAACT	NA	False	NA	4	True	TATAAA	-14	NA	21122392	21124117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_21122400_21124100
ENSMUSG00000032178.15_1	chr9	+	3534	21	NIC	ENSMUSG00000032178.15	novel	3513	21	NA	NA	-32	-19	combination_of_known_junctions	FALSE	canonical	3	965	junction_19	396.045376188133	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAGAAAAACAAAAG	NA	False	NA	96	True	NA	NA	NA	21279201	21316637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
ENSMUSG00000032178.15_130	chr9	+	2066	2	FSM	ENSMUSG00000032178.15	ENSMUST00000214200.2	871	2	-861	-334	-861	-19	multi-exon	FALSE	canonical	3	1346	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAGAAAAACAAAAG	NA	False	NA	96	True	NA	NA	NA	21314067	21316637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21315488_21315991
ENSMUSG00000032178.15_3	chr9	+	3487	20	FSM	ENSMUSG00000032178.15	ENSMUST00000067646.12	3549	20	43	19	-24	-19	multi-exon	FALSE	canonical	3	965	junction_18	395.630525194118	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAGAAAAACAAAAG	NA	False	NA	96	True	NA	NA	NA	21279209	21316637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
ENSMUSG00000032178.15_4	chr9	+	3714	19	FSM	ENSMUSG00000032178.15	ENSMUST00000216892.2	3684	19	-32	2	-15	0	multi-exon	FALSE	canonical	3	922	junction_18	377.751077487821	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCCCTCCGTACTTGA	NA	False	NA	21	True	AATACA	-10	NA	21279218	21313088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
ENSMUSG00000032178.15_6	chr9	+	3680	18	FSM	ENSMUSG00000032178.15	ENSMUST00000115414.3	3606	18	-85	11	-20	0	multi-exon	FALSE	canonical	3	922	junction_17	371.198684895057	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCCCTCCGTACTTGA	NA	False	NA	21	True	AATACA	-10	NA	21279213	21313088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
ENSMUSG00000032180.12_0	chr9	-	1309	4	FSM	ENSMUSG00000032180.12	ENSMUST00000034698.9	1378	4	66	3	1	-1	multi-exon	FALSE	canonical	3	533	junction_2	14.8548533034381	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGCCTGGTGACTGG	NA	False	NA	-8	True	AATAAA	-16	NA	21421482	21418853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21419688_21420226_21420411_21420549_21420648_21421289
ENSMUSG00000032180.12_2	chr9	-	1272	4	FSM	ENSMUSG00000032180.12	ENSMUST00000214576.2	1013	4	50	-309	3	-1	multi-exon	FALSE	canonical	3	33	junction_2	250.551835399827	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGCCTGGTGACTGG	NA	False	NA	-8	True	AATAAA	-16	NA	21421480	21418853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21419688_21420226_21420411_21420584_21420648_21421289
ENSMUSG00000032180.12_3	chr9	-	1446	3	FSM	ENSMUSG00000032180.12	ENSMUST00000213316.2	1454	3	4	4	4	0	multi-exon	FALSE	canonical	3	564	junction_2	0.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTGCCTGGTGACTGGG	NA	False	NA	-7	True	AATAAA	-17	NA	21421479	21418852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21419688_21420226_21420648_21421289
ENSMUSG00000032181.8_2	chr9	-	2015	12	FSM	ENSMUSG00000032181.8	ENSMUST00000213324.2	2152	12	126	11	86	-11	multi-exon	TRUE	canonical	0	0	junction_7	1.99171839092788	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCTTGACGCTCTGAGA	7961	False	NA	-19	True	AATAAA	-14	NA	75591171	75550657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_75551227_75558912_75558994_75568534_75568673_75570489_75570559_75572935_75573053_75576496_75576675_75582626_75582777_75583950_75584094_75589245_75589462_75589555_75589602_75590219_75590273_75590916
ENSMUSG00000032182.16_10	chr9	-	1342	3	ISM	ENSMUSG00000032182.16	ENSMUST00000180365.9	2014	9	2593	23	2555	-23	3prime_fragment	FALSE	canonical	3	81	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATTAAAAAA	8679	False	NA	-43	True	NA	NA	NA	21501513	21500004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21501057_21501141_21501325_21501406
ENSMUSG00000032182.16_13	chr9	-	1883	8	NIC	ENSMUSG00000032182.16	novel	2014	9	NA	NA	9	-23	intron_retention	FALSE	canonical	2	3	junction_7	31.707206417083	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATTAAAAAA	6133	False	NA	-43	True	NA	NA	NA	21504059	21500004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21504022
ENSMUSG00000032182.16_17	chr9	-	1838	9	NIC	ENSMUSG00000032182.16	novel	1894	10	NA	NA	6	-23	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	29.0635080470338	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATTAAAAAA	6092	False	NA	-43	True	NA	NA	NA	21504100	21500004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21504032
ENSMUSG00000032182.16_2	chr9	-	1879	10	NIC	ENSMUSG00000032182.16	novel	1894	10	NA	NA	-2	-23	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	17.7478915457862	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATTAAAAAA	6122	False	NA	-43	True	NA	NA	NA	21504070	21500004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
ENSMUSG00000032182.16_3	chr9	-	1880	10	FSM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	1	13	1	-9	multi-exon	FALSE	canonical	3	27	junction_9	21.338541031039	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGCAGCATGTCACG	6125	False	NA	-29	True	AATAAA	-4	NA	21504067	21499990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
ENSMUSG00000032182.16_4	chr9	-	1949	9	FSM	ENSMUSG00000032182.16	ENSMUST00000180365.9	2014	9	42	23	4	-23	multi-exon	FALSE	canonical	3	41	junction_8	18.6463803457937	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATTAAAAAA	6128	False	NA	-43	True	NA	NA	NA	21504064	21500004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
ENSMUSG00000032182.16_7	chr9	-	2067	8	FSM	ENSMUSG00000032182.16	ENSMUST00000034700.15	2174	8	80	27	24	-23	multi-exon	FALSE	canonical	3	66	junction_3	11.8062591493682	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATTAAAAAA	6148	False	NA	-43	True	NA	NA	NA	21504044	21500004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
ENSMUSG00000032182.16_8	chr9	-	1984	9	ISM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	31	27	31	-23	intron_retention	FALSE	canonical	3	66	junction_4	11.9032558571174	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATTAAAAAA	6155	False	NA	-43	True	NA	NA	NA	21504037	21500004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
ENSMUSG00000032182.16_9	chr9	-	1945	9	NIC	ENSMUSG00000032182.16	novel	1894	10	NA	NA	-2	-23	intron_retention	FALSE	canonical	3	27	junction_8	22.544400635191	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATTAAAAAA	6122	False	NA	-43	True	NA	NA	NA	21504070	21500004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
ENSMUSG00000032184.6_0	chr9	+	1188	3	FSM	ENSMUSG00000032184.6	ENSMUST00000034702.6	1189	3	-3	4	-3	1	multi-exon	FALSE	canonical	3	61	junction_2	3	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGAGCCTTCATTTCTCT	NA	False	NA	3	True	AATAAA	-13	NA	75533019	75545049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_75533320_75542667_75543000_75544493
ENSMUSG00000032185.16_0	chr9	+	3195	16	FSM	ENSMUSG00000032185.16	ENSMUST00000034703.15	3220	16	18	7	-1	-7	multi-exon	FALSE	canonical	3	1025	junction_5	67.5234938537856	2237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAGCCTGCAAAACAG	NA	False	NA	13	True	AATAAA	-15	NA	21458207	21500756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803_21498882_21499146_21499216_21499344
ENSMUSG00000032185.16_8	chr9	+	3323	15	FSM	ENSMUSG00000032185.16	ENSMUST00000115394.8	3320	15	-10	7	0	-7	multi-exon	FALSE	canonical	3	1025	junction_5	69.6438461468237	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAGCCTGCAAAACAG	NA	False	NA	13	True	AATAAA	-15	NA	21458208	21500756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803_21498882_21499146
ENSMUSG00000032185.16_9	chr9	+	3127	15	FSM	ENSMUSG00000032185.16	ENSMUST00000115395.10	3152	15	-2	27	-2	-7	multi-exon	FALSE	canonical	3	70	junction_14	283.604972827073	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAGCCTGCAAAACAG	NA	False	NA	13	True	AATAAA	-15	NA	21458206	21500756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803_21498882_21499344
ENSMUSG00000032186.16_0	chr9	-	3187	1	ISM	ENSMUSG00000032186.16	ENSMUST00000098552.10	9871	10	42493	3	28841	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCCTGGTTCCTGGCTA	NA	False	NA	-1	True	AATAAA	-16	NA	75476092	75472905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_75472900_75476100
ENSMUSG00000032186.16_2	chr9	-	3617	11	NNC	ENSMUSG00000032186.16	novel	1921	11	NA	NA	4	1943	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	6.61891229734916	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTTTGAGTCACCCCC	NA	False	NA	NA	False	AATAAA	-13	NA	75518418	75478927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_75480383_75480444_75481406_75483927_75484073_75484390_75484535_75489111_75489220_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491_75504685_75518305
ENSMUSG00000032186.16_3	chr9	-	1546	10	FSM	ENSMUSG00000032186.16	ENSMUST00000098552.10	9871	10	129	8196	-4	-1	multi-exon	FALSE	canonical	3	14	junction_9	3.42467444609388	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTGTAGTTTGTCTTGC	NA	False	NA	NA	False	NA	NA	NA	75518456	75481098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_75481406_75483927_75484073_75484390_75484535_75489111_75489220_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491_75504685_75518305
ENSMUSG00000032187.17_11	chr9	+	5421	34	NIC	ENSMUSG00000032187.17	novel	6376	34	NA	NA	-12	-5	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_28	156.387829934745	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCACCACTGGCTCCCTG	1320	False	NA	17	True	AATAAA	-14	NA	21527547	21614657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597308_21597572_21611098_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
ENSMUSG00000032187.17_4	chr9	+	5416	34	FSM	ENSMUSG00000032187.17	ENSMUST00000034707.15	6354	34	82	856	-13	-5	multi-exon	FALSE	canonical	3	423	junction_28	87.1904283674422	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCACCACTGGCTCCCTG	1319	False	NA	17	True	AATAAA	-14	NA	21527546	21614657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597317_21597572_21611095_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
ENSMUSG00000032187.17_5	chr9	+	5415	34	FSM	ENSMUSG00000032187.17	ENSMUST00000174008.8	5405	34	-15	5	-15	-5	multi-exon	FALSE	canonical	3	225	junction_29	114.960846930185	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCACCACTGGCTCCCTG	1317	False	NA	17	True	AATAAA	-14	NA	21527544	21614657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597317_21597572_21611098_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
ENSMUSG00000032187.17_6	chr9	+	5424	34	FSM	ENSMUSG00000032187.17	ENSMUST00000098948.10	6376	34	83	869	-12	-5	multi-exon	FALSE	non_canonical	0	0	junction_28	138.291543357457	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCACCACTGGCTCCCTG	1320	False	NA	17	True	AATAAA	-14	NA	21527547	21614657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597308_21597572_21611095_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
ENSMUSG00000032192.10_1	chr9	+	2087	11	FSM	ENSMUSG00000032192.10	ENSMUST00000215875.2	2105	11	18	0	13	0	multi-exon	TRUE	canonical	3	15	junction_6	3.38230690505755	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCAAGGGGTATCTTGTC	393	False	NA	1	True	NA	NA	NA	75221435	75253153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_75221666_75234414_75234552_75239154_75239197_75240090_75240168_75241450_75241584_75242932_75243077_75244552_75244645_75247469_75247519_75250789_75250887_75251762_75251930_75252234
ENSMUSG00000032193.10_0	chr9	+	4477	18	FSM	ENSMUSG00000032193.10	ENSMUST00000034713.9	4627	18	146	4	-3	0	multi-exon	FALSE	canonical	3	262	junction_7	34.4140270749526	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTTGTCATCCTTATG	1919	False	NA	12	True	ATTAAA	-11	NA	21634924	21661211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21655525_21655682_21657027_21657202_21657657_21657736_21658444_21658603_21659436
ENSMUSG00000032193.10_1	chr9	+	4470	18	NNC	ENSMUSG00000032193.10	novel	4627	18	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	77.0051452017542	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTTGTCATCCTTATG	1923	False	NA	12	True	ATTAAA	-11	NA	21634928	21661211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_21635141_21643045_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21655525_21655682_21657027_21657202_21657657_21657736_21658444_21658603_21659436
ENSMUSG00000032193.10_27	chr9	+	3805	15	ISM	ENSMUSG00000032193.10	ENSMUST00000034713.9	4627	18	10219	3	-2405	1	3prime_fragment	FALSE	canonical	3	262	junction_4	37.5912495245413	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTTGTCATCCTTATGT	4044	False	NA	13	True	ATTAAA	-12	NA	21644997	21661212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21655525_21655682_21657027_21657202_21657657_21657736_21658444_21658603_21659436
ENSMUSG00000032193.10_48	chr9	+	1373	1	ISM	ENSMUSG00000032193.10	ENSMUST00000034713.9	4627	18	25060	4	3220	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTTGTCATCCTTATG	NA	False	NA	12	True	ATTAAA	-11	NA	21659838	21661211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_21659800_21661200
ENSMUSG00000032194.10_0	chr9	-	1394	1	ISM	ENSMUSG00000032194.10	ENSMUST00000034717.7	5040	12	30558	9	30317	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACATTGCCTCGT	NA	False	NA	-21	True	AATAAA	-6	NA	21679482	21678088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21678100_21679500
ENSMUSG00000032194.10_1	chr9	-	4824	12	FSM	ENSMUSG00000032194.10	ENSMUST00000034717.7	5040	12	207	9	-11	-9	multi-exon	FALSE	canonical	0	0	junction_11	126.069113932015	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACATTGCCTCGT	NA	False	NA	-21	True	AATAAA	-6	NA	21709833	21678088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21680301_21681049_21681140_21681221_21681423_21684040_21684184_21685828_21686049_21686996_21687085_21690996_21691234_21691674_21691766_21691855_21692000_21705752_21706980_21707375_21707491_21709777
ENSMUSG00000032194.10_14	chr9	-	2437	3	ISM	ENSMUSG00000032194.10	ENSMUST00000034717.7	5040	12	28684	9	28443	-9	3prime_fragment	FALSE	canonical	3	444	junction_2	20	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACATTGCCTCGT	NA	False	NA	-21	True	AATAAA	-6	NA	21681356	21678088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21680301_21681049_21681140_21681221
ENSMUSG00000032194.10_15	chr9	-	3954	10	ISM	ENSMUSG00000032194.10	ENSMUST00000034717.7	5040	12	3758	11	3517	-11	3prime_fragment	FALSE	canonical	3	374	junction_8	36.8312803181826	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATAAAAACATTGCCTC	NA	False	NA	-23	True	AATAAA	-4	NA	21706282	21678090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21680301_21681049_21681140_21681221_21681423_21684040_21684184_21685828_21686049_21686996_21687085_21690996_21691234_21691674_21691766_21691855_21692000_21705752
ENSMUSG00000032194.10_9	chr9	-	4771	11	ISM	ENSMUSG00000032194.10	ENSMUST00000034717.7	5040	12	2547	9	2306	-9	3prime_fragment	FALSE	canonical	3	374	junction_8	35.3162851953599	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAACATTGCCTCGT	NA	False	NA	-21	True	AATAAA	-6	NA	21707493	21678088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21680301_21681049_21681140_21681221_21681423_21684040_21684184_21685828_21686049_21686996_21687085_21690996_21691234_21691674_21691766_21691855_21692000_21705752_21706980_21707375
ENSMUSG00000032198.10_11	chr9	-	6430	49	NIC	ENSMUSG00000032198.10	novel	6880	50	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	1	53	junction_27	42.5310701379983	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAACCTGTGTGGTGTGC	6275	False	NA	NA	False	TTTAAA	-12	NA	21763912	21711481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714415_21715905_21715921_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21737078_21737172_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ENSMUSG00000032198.10_15	chr9	-	6442	49	NIC	ENSMUSG00000032198.10	novel	6467	49	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	1	57	junction_26	41.3909156615984	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAACCTGTGTGGTGTGC	6275	False	NA	NA	False	TTTAAA	-12	NA	21763912	21711481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714415_21715905_21715921_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21740769_21740875_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ENSMUSG00000032198.10_164	chr9	-	3034	22	ISM	ENSMUSG00000032198.10	ENSMUST00000217515.2	3130	24	2	5674	0	-5674	5prime_fragment	FALSE	canonical	3	152	junction_8	19.8113552266968	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATTTAGTTTATGTGTA	6275	False	NA	NA	False	NA	NA	NA	21763912	21741215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ENSMUSG00000032198.10_170	chr9	-	1868	15	FSM	ENSMUSG00000032198.10	ENSMUST00000213296.2	1868	15	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	50.5494807094989	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGATTGCCTCTGTTCTCT	6275	False	NA	-6	True	NA	NA	NA	21763912	21748644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21748848_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ENSMUSG00000032198.10_2	chr9	-	6533	50	NIC	ENSMUSG00000032198.10	novel	6880	50	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	1	27	junction_27	45.6108432419436	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAACCTGTGTGGTGTGC	6277	False	NA	NA	False	TTTAAA	-12	NA	21763910	21711481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714415_21715905_21715921_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21737078_21737172_21740769_21740875_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ENSMUSG00000032199.14_0	chr9	-	2152	4	FSM	ENSMUSG00000032199.14	ENSMUST00000034720.12	2200	4	14	34	-11	0	multi-exon	FALSE	canonical	3	2231	junction_1	103.721850264167	3488	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCCCGAGCTCATGGCG	2484	False	NA	-33	True	AATAAA	-15	NA	71393203	71385752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_71386823_71388623_71388829_71390448_71391088_71392965
ENSMUSG00000032202.12_0	chr9	+	3014	6	FSM	ENSMUSG00000032202.12	ENSMUST00000034722.5	2979	6	-41	6	-38	-6	multi-exon	FALSE	canonical	2	4	junction_1	3.86781592116274	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAATAATAAAAAAAAATA	NA	False	NA	NA	False	ATTAAA	-5	NA	72952097	73004868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72952294_72982674_72982850_72989683_72989770_72992212_72992317_72994358_72994483_73002539
ENSMUSG00000032202.12_10	chr9	+	1512	1	FSM	ENSMUSG00000032202.12	ENSMUST00000184032.2	1583	1	1239	-1168	1239	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CATAATAATAATAAAAAAAA	7606	False	NA	NA	False	ATTAAA	-2	NA	73003353	73004865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_73003400_73004900
ENSMUSG00000032202.12_3	chr9	+	3079	6	NNC	ENSMUSG00000032202.12	novel	3168	7	NA	NA	19147	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5.08330601085553	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAATAATAAAAAAAAATA	1172	False	NA	NA	False	ATTAAA	-5	NA	72971412	73004868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_72971674_72982674_72982850_72989683_72989770_72992212_72992317_72994358_72994483_73002539
ENSMUSG00000032207.11_0	chr9	-	1042	5	ISM	ENSMUSG00000032207.11	ENSMUST00000034731.10	1920	9	118050	48	117855	-4	3prime_fragment	FALSE	canonical	3	43	junction_2	8.95823643358446	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAAGGAGGGTGTGCTT	NA	False	NA	NA	False	AATAAA	-7	NA	70724040	70705457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_70705691_70709354_70709574_70710978_70711097_70719951_70720195_70723811
ENSMUSG00000032212.11_1	chr9	+	3778	21	FSM	ENSMUSG00000032212.11	ENSMUST00000049263.9	3691	21	-88	1	-12	-1	multi-exon	FALSE	canonical	3	132	junction_6	54.986612006924	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTTGCTAATGTATTGAG	NA	False	NA	14	True	AATAAA	-15	NA	70450063	70499513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480738_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
ENSMUSG00000032212.11_10	chr9	+	3721	21	FSM	ENSMUSG00000032212.11	ENSMUST00000216816.2	3755	21	31	3	-9	-1	multi-exon	FALSE	canonical	3	66	junction_6	63.2220491600834	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTTGCTAATGTATTGAG	NA	False	NA	14	True	AATAAA	-15	NA	70450066	70499513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480792_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
ENSMUSG00000032212.11_5	chr9	+	3300	20	NIC	ENSMUSG00000032212.11	novel	3755	21	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	3	20	junction_6	70.7250930092244	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTTGCTAATGTATTGAG	NA	False	NA	14	True	AATAAA	-15	NA	70450072	70499513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
ENSMUSG00000032215.16_0	chr9	+	1517	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	25	1	25	-1	multi-exon	FALSE	canonical	3	633	junction_5	127.855230632149	830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTACATATCTCTTATT	8605	False	NA	12	True	AATAAA	-17	NA	73020754	73030614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
ENSMUSG00000032215.16_12	chr9	+	751	1	ISM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	9133	2	7985	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCCTACATATCTCTTAT	NA	False	NA	11	True	AATAAA	-16	NA	73029862	73030613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_73029900_73030600
ENSMUSG00000032216.16_0	chr9	+	5390	29	FSM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	99	10	7	-10	multi-exon	FALSE	non_canonical	0	0	junction_1	553.560943449088	5508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACAAAGCTGTGGCTCC	NA	False	NA	NA	False	AATAAA	-17	NA	72569726	72657124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
ENSMUSG00000032216.16_298	chr9	+	1757	1	ISM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	85740	10	2247	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	418	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACAAAGCTGTGGCTCC	NA	False	NA	NA	False	AATAAA	-17	NA	72655367	72657124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_72655400_72657100
ENSMUSG00000032217.14_0	chr9	-	4807	14	NIC	ENSMUSG00000032217.14	novel	4961	14	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	3	148	junction_8	58.7438527565769	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTTTGTGTTTCATA	2227	False	NA	-20	True	AATAAA	-14	NA	70411026	70332712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
ENSMUSG00000032217.14_1	chr9	-	4835	14	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-19	0	combination_of_known_junctions	TRUE	canonical	3	68	junction_2	77.5959798873276	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTTGTGTTTCATAA	2227	False	NA	-19	True	AATAAA	-15	NA	70411026	70332711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
ENSMUSG00000032217.14_11	chr9	-	4810	14	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	3	170	junction_8	55.2423386211279	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTTTGTGTTTCATA	2227	False	NA	-20	True	AATAAA	-14	NA	70411026	70332712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
ENSMUSG00000032217.14_13	chr9	-	4897	15	FSM	ENSMUSG00000032217.14	ENSMUST00000034739.12	4880	15	-19	2	-19	-1	multi-exon	FALSE	canonical	3	68	junction_2	86.8932021013645	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTTTGTGTTTCATA	2227	False	NA	-20	True	AATAAA	-14	NA	70411026	70332712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221_70410285_70410740
ENSMUSG00000032217.14_34	chr9	-	4893	15	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-20	-3	combination_of_known_junctions	FALSE	canonical	3	68	junction_2	88.5629028154681	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATTGTCTTTGTGTTTCA	2226	False	NA	-22	True	AATAAA	-12	NA	70411027	70332714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221_70410285_70410740
ENSMUSG00000032217.14_6	chr9	-	4831	14	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	3	68	junction_2	79.8840876246409	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTTTGTGTTTCATA	2227	False	NA	-20	True	AATAAA	-14	NA	70411026	70332712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
ENSMUSG00000032217.14_8	chr9	-	4873	15	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-22	-1	combination_of_known_junctions	FALSE	canonical	3	128	junction_14	73.562863579113	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTTTGTGTTTCATA	2224	False	NA	-20	True	AATAAA	-14	NA	70411029	70332712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221_70410285_70410740
ENSMUSG00000032217.14_9	chr9	-	4873	15	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	3	128	junction_14	71.3097941007676	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTTTGTGTTTCATA	2227	False	NA	-20	True	AATAAA	-14	NA	70411026	70332712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221_70410285_70410740
ENSMUSG00000032218.8_0	chr9	-	1520	9	FSM	ENSMUSG00000032218.8	ENSMUST00000034742.8	1531	9	9	2	9	-2	multi-exon	FALSE	canonical	3	1324	junction_2	68.4557338723353	1100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGGTATCCTGTGTAT	NA	False	NA	-10	True	AATAAA	-12	NA	70328820	70314975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
ENSMUSG00000032220.11_1	chr9	+	4639	28	FSM	ENSMUSG00000032220.11	ENSMUST00000034745.9	4625	28	-16	2	2	-2	multi-exon	FALSE	canonical	3	179	junction_9	20.3906969292862	579	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTTGTTTCTTCATGA	NA	False	NA	18	True	AATAAA	-18	NA	70114633	70307046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_70114986_70194193_70194338_70204548_70204639_70208974_70209070_70223873_70223962_70227350_70227441_70229673_70229806_70232114_70232250_70234425_70234559_70242396_70242594_70245010_70245092_70245998_70246086_70248562_70248650_70249263_70249432_70250325_70250412_70253968_70254051_70260541_70260649_70266566_70266666_70269504_70269650_70274897_70275013_70275950_70276121_70277638_70277785_70283785_70283933_70285492_70285651_70286002_70286093_70291085_70291288_70303057_70303228_70306003
ENSMUSG00000032221.15_4	chr9	+	1766	10	FSM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	33	3451	33	-3451	multi-exon	FALSE	canonical	3	40	junction_2	21.6834692682276	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGCAGAATTAGTCATTT	NA	False	NA	3	True	ATTAAA	-15	NA	72345849	72365856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72345962_72346521_72346744_72352124_72352253_72353488_72353592_72355810_72356041_72356432_72356650_72356733_72356842_72359862_72360121_72364059_72364186_72365594
ENSMUSG00000032221.15_5	chr9	+	1202	7	NIC	ENSMUSG00000032221.15	novel	5250	10	NA	NA	42	-3451	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	33.4535332795938	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGCAGAATTAGTCATTT	NA	False	NA	3	True	ATTAAA	-15	NA	72345858	72365856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_72345962_72346521_72346744_72352124_72352253_72353488_72353592_72359862_72360121_72364059_72364186_72365594
ENSMUSG00000032221.15_9	chr9	+	866	3	ISM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	13826	3451	13826	-3451	3prime_fragment	FALSE	canonical	3	85	junction_1	11.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGCAGAATTAGTCATTT	1866	False	NA	3	True	ATTAAA	-15	NA	72359642	72365856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_72360121_72364059_72364186_72365594
ENSMUSG00000032224.16_0	chr9	-	1695	1	ISM	ENSMUSG00000032224.16	ENSMUST00000034749.16	3703	9	51369	4	12867	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATAAGTGTGGCATGGGA	NA	False	NA	-24	True	AATAAA	-15	NA	69997491	69995796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_69995800_69997500
ENSMUSG00000032224.16_23	chr9	-	2725	3	ISM	ENSMUSG00000032224.16	ENSMUST00000034749.16	3703	9	113	34212	113	2242	5prime_fragment	FALSE	canonical	3	239	junction_2	2.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAAAAGGATGCTTTGC	NA	False	NA	NA	False	NA	NA	NA	70048747	70030004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_70032480_70033468_70033566_70048594
ENSMUSG00000032224.16_3	chr9	-	3578	9	FSM	ENSMUSG00000032224.16	ENSMUST00000034749.16	3703	9	104	21	104	-21	multi-exon	FALSE	canonical	3	198	junction_1	14.7118149798045	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAGAATAAAATTTCCAA	NA	False	NA	-41	True	NA	NA	NA	70048756	69995813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_69998174_70000772_70000966_70003332_70003469_70006369_70006477_70010101_70010232_70017539_70017659_70032205_70032480_70033468_70033566_70048594
ENSMUSG00000032226.6_1	chr9	-	3464	2	ISM	ENSMUSG00000032226.6	ENSMUST00000034751.6	4301	3	1262	573	1262	-573	3prime_fragment	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAAAATGTGTTGGGTGG	NA	False	NA	NA	False	ATTAAA	-14	NA	69944108	69939350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_69942621_69943914
ENSMUSG00000032228.17_0	chr9	-	4648	20	FSM	ENSMUSG00000032228.17	ENSMUST00000034755.13	4621	20	-38	11	-12	-2	multi-exon	FALSE	canonical	3	33	junction_6	15.470103416687	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAGTAAACTAGTGAGT	9366	False	NA	-38	True	AATAAA	-19	NA	72019141	71751560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_71922919_71922994_72016957_72017031_72018019_72018117_72018857
ENSMUSG00000032228.17_1	chr9	-	4721	21	FSM	ENSMUSG00000032228.17	ENSMUST00000183404.8	6299	21	-13	1591	11	-2	multi-exon	FALSE	canonical	3	53	junction_7	13.3626344707921	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAGTAAACTAGTGAGT	9365	False	NA	-38	True	AATAAA	-19	NA	72019142	71751560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71776280_71776353_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_71922919_71922994_72016957_72017031_72018019_72018117_72018857
ENSMUSG00000032228.17_12	chr9	-	1915	1	ISM	ENSMUSG00000032228.17	ENSMUST00000183404.8	6299	21	265654	1591	38518	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAGTAAACTAGTGAGT	NA	False	NA	-38	True	AATAAA	-19	NA	71753475	71751560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_71751600_71753500
ENSMUSG00000032228.17_3	chr9	-	2530	3	ISM	ENSMUSG00000032228.17	ENSMUST00000184770.8	5742	12	39688	27	28313	-2	3prime_fragment	FALSE	canonical	3	88	junction_2	9.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAGTAAACTAGTGAGT	7888	False	NA	-38	True	AATAAA	-19	NA	71763680	71751560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_71753843_71757053_71757208_71763586
ENSMUSG00000032231.15_0	chr9	+	1359	13	FSM	ENSMUSG00000032231.15	ENSMUST00000034756.15	1447	13	77	11	-19	-11	multi-exon	FALSE	canonical	3	66	junction_7	12.0908022893437	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACAAGAATGCCGTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	69360978	69399066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_69361022_69371741_69371807_69374572_69374673_69383334_69383430_69386959_69387074_69390255_69390347_69391061_69391142_69392479_69392540_69393751_69393846_69394834_69394931_69395336_69395396_69396933_69397057_69398727
ENSMUSG00000032231.15_4	chr9	+	314	1	ISM	ENSMUSG00000032231.15	ENSMUST00000034756.15	1447	13	37853	9	4690	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAGAATGCCGTTGCCT	773	False	NA	NA	False	AATAAA	-16	NA	69398754	69399068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_69398800_69399100
ENSMUSG00000032232.15_0	chr9	-	6736	19	FSM	ENSMUSG00000032232.15	ENSMUST00000072899.9	6754	19	13	5	13	-5	multi-exon	FALSE	canonical	1	2	junction_8	5.66666666666667	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGAATCCTGGCTCTTGT	NA	False	NA	NA	False	AATAAA	-11	NA	71678871	71533795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_71536675_71537757_71537922_71538143_71538253_71539012_71539138_71539879_71539964_71548640_71548731_71552773_71552936_71557503_71557675_71558515_71558669_71562574_71562680_71563327_71563535_71612429_71612643_71622604_71622741_71623689_71623839_71624677_71624780_71628877_71628984_71630815_71630911_71631759_71633365_71678790
ENSMUSG00000032232.15_1	chr9	-	2549	1	ISM	ENSMUSG00000032232.15	ENSMUST00000121322.8	6541	18	142545	0	2052	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGGCTCTTGTATTAT	NA	False	NA	NA	False	AATAAA	-16	NA	71536339	71533790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_71533800_71536300
ENSMUSG00000032232.15_2	chr9	-	3852	9	ISM	ENSMUSG00000032232.15	ENSMUST00000121322.8	6541	18	120291	15	-2961	-15	3prime_fragment	FALSE	canonical	1	2	junction_8	1.6583123951777	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCACTTGACAGGAATCC	NA	False	NA	NA	False	AATAAA	-1	NA	71558593	71533805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_71536675_71537757_71537922_71538143_71538253_71539012_71539138_71539879_71539964_71548640_71548731_71552773_71552936_71557503_71557675_71558515
ENSMUSG00000032232.15_5	chr9	-	4110	11	ISM	ENSMUSG00000032232.15	ENSMUST00000121322.8	6541	18	115496	-2	-7756	2	3prime_fragment	FALSE	canonical	1	2	junction_8	1.90787840283389	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCTTGTATTATTT	NA	False	NA	NA	False	AATAAA	-18	NA	71563388	71533788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_71536675_71537757_71537922_71538143_71538253_71539012_71539138_71539879_71539964_71548640_71548731_71552773_71552936_71557503_71557675_71558515_71558669_71562574_71562680_71563327
ENSMUSG00000032235.16_0	chr9	+	4084	16	FSM	ENSMUSG00000032235.16	ENSMUST00000034761.15	4169	16	36	49	5	-49	multi-exon	FALSE	canonical	3	101	junction_3	13.7737270030865	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATGTGTTTGTCATTTC	4688	False	NA	20	True	AATAAA	-14	NA	69305223	69340355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_69305336_69306227_69306370_69307758_69307864_69314398_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
ENSMUSG00000032235.16_13	chr9	+	3793	15	NIC	ENSMUSG00000032235.16	novel	4169	16	NA	NA	6	-49	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	42.3416618300535	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATGTGTTTGTCATTTC	4689	False	NA	20	True	AATAAA	-14	NA	69305224	69340355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_69305336_69307758_69307864_69314546_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
ENSMUSG00000032235.16_20	chr9	+	3939	15	NIC	ENSMUSG00000032235.16	novel	4169	16	NA	NA	7	-50	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	33.0834597060593	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAATGTGTTTGTCATTT	4690	False	NA	19	True	AATAAA	-13	NA	69305225	69340354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_69305336_69307758_69307864_69314398_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
ENSMUSG00000032235.16_4	chr9	+	3954	16	NIC	ENSMUSG00000032235.16	novel	4169	16	NA	NA	0	-50	combination_of_known_junctions	TRUE	canonical	3	18	junction_3	30.4426601261381	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAATGTGTTTGTCATTT	4669	False	NA	19	True	AATAAA	-13	NA	69305204	69340354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_69305336_69306227_69306370_69307758_69307864_69314546_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
ENSMUSG00000032235.16_58	chr9	+	2525	7	ISM	ENSMUSG00000032235.16	ENSMUST00000034761.15	4169	16	17649	65	-1160	-65	3prime_fragment	FALSE	canonical	3	116	junction_5	12.1060131982233	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACACTAAAAGCTTCAGAA	8043	False	NA	4	True	NA	NA	NA	69322836	69340339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
ENSMUSG00000032239.11_1	chr9	-	1122	6	FSM	ENSMUSG00000032239.11	ENSMUST00000034763.10	1134	6	9	3	9	-3	multi-exon	FALSE	canonical	3	365	junction_2	10.1311401135312	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTAGTCATTATTAATA	9519	False	NA	-4	True	AATAAA	-20	NA	22379635	22359609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_22360151_22361097_22361160_22365074_22365167_22368668_22368799_22370006_22370038_22379369
ENSMUSG00000032244.10_0	chr9	-	3543	1	ISM	ENSMUSG00000032244.10	ENSMUST00000034775.10	6785	2	16560	11	16560	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	384	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTACCTTGAAGT	NA	False	NA	-16	True	AGTAAA	-7	NA	62702656	62699113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_62699100_62702700
ENSMUSG00000032244.10_1	chr9	-	6712	2	FSM	ENSMUSG00000032244.10	ENSMUST00000034775.10	6785	2	62	11	62	-11	multi-exon	FALSE	canonical	3	242	junction_1	0	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTACCTTGAAGT	NA	False	NA	-16	True	AGTAAA	-7	NA	62719154	62699113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_62705011_62718339
ENSMUSG00000032245.13_0	chr9	+	2133	7	FSM	ENSMUSG00000032245.13	ENSMUST00000034776.13	2142	7	5	4	-2	-4	multi-exon	FALSE	canonical	3	52	junction_1	5.87130498460285	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATGGGCCGTGGCTGTTT	NA	False	NA	9	True	AATAAA	-17	NA	62746071	62759284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_62746237_62751851_62751967_62753235_62753335_62754247_62754437_62754866_62754923_62756390_62756514_62757898
ENSMUSG00000032245.13_1	chr9	+	2260	8	NIC	ENSMUSG00000032245.13	novel	2142	7	NA	NA	-15	-4	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	23.492942926482	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATGGGCCGTGGCTGTTT	NA	False	NA	9	True	AATAAA	-17	NA	62746051	62759284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_62746237_62747766_62747874_62751851_62751967_62753235_62753335_62754247_62754437_62754866_62754923_62756390_62756514_62757898
ENSMUSG00000032245.13_7	chr9	+	825	1	ISM	ENSMUSG00000032245.13	ENSMUST00000034776.13	2142	7	12393	4	4145	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATGGGCCGTGGCTGTTT	5070	False	NA	9	True	AATAAA	-17	NA	62758459	62759284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_62758500_62759300
ENSMUSG00000032246.15_0	chr9	+	770	3	ISM	ENSMUSG00000032246.15	ENSMUST00000034777.14	864	5	10572	6	10542	0	3prime_fragment	FALSE	canonical	3	41	junction_1	28	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATGTGGAATTGGTGT	3023	False	NA	3	True	AATAAA	-15	NA	62775957	62783197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_62776100_62778547_62778737_62782758
ENSMUSG00000032246.15_1	chr9	+	732	2	ISM	ENSMUSG00000032246.15	ENSMUST00000215870.2	803	4	10555	0	10553	0	3prime_fragment	FALSE	canonical	3	41	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCATGGGTTTTTGTTTG	3034	False	NA	NA	False	NA	NA	NA	62775968	62779148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_62776100_62778547
ENSMUSG00000032246.15_2	chr9	+	515	2	ISM	ENSMUSG00000032246.15	ENSMUST00000215968.2	526	4	13044	-70	13044	70	3prime_fragment	FALSE	canonical	3	97	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTAATAAGGTCTGTC	5525	False	NA	NA	False	AATAAA	-22	NA	62778459	62782996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_62778737_62782758
ENSMUSG00000032246.15_3	chr9	+	977	2	ISM	ENSMUSG00000032246.15	ENSMUST00000214633.2	394	4	12797	-307	12795	-5	3prime_fragment	FALSE	canonical	2	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTCAAAGCATGTGGAAT	5276	False	NA	-3	True	AATAAA	-9	NA	62778210	62783191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_62778737_62782740
ENSMUSG00000032249.15_0	chr9	+	1071	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	47	995	47	36	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTTATTTCCCCCCCTC	NA	False	NA	7	True	AATAAA	-18	NA	62248657	62285099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
ENSMUSG00000032249.15_36	chr9	+	965	1	ISM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	36506	13	4396	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTTTTGGGAGATGGCT	NA	False	NA	12	True	AATAAA	-12	NA	62285116	62286081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_62285100_62286100
ENSMUSG00000032251.13_0	chr9	+	1084	4	FSM	ENSMUSG00000032251.13	ENSMUST00000113245.9	2158	4	460	614	194	53	multi-exon	TRUE	canonical	3	114	junction_3	13.589211407093	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCATACTGAATTTTTACT	NA	False	NA	NA	False	AATAAA	-17	NA	82712052	82729126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_82712393_82719470_82719537_82728351_82728483_82728579
ENSMUSG00000032251.13_2	chr9	+	1011	3	FSM	ENSMUSG00000032251.13	ENSMUST00000034783.6	1159	3	202	-54	202	54	multi-exon	FALSE	canonical	1	5	junction_1	54.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACTGAATTTTTACTT	NA	False	NA	NA	False	AATAAA	-18	NA	82712060	82729127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_82712393_82728351_82728483_82728579
ENSMUSG00000032252.15_0	chr9	-	4878	5	FSM	ENSMUSG00000032252.15	ENSMUST00000185675.7	4850	5	-36	8	9	-8	multi-exon	FALSE	canonical	3	145	junction_3	11.5974135047432	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAATGTACTTGGATA	NA	False	NA	NA	False	AATAAA	-13	NA	62029928	61964537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_61968318_61975666_61975913_61977296_61977896_61995710_61995802_62029766
ENSMUSG00000032252.15_1	chr9	-	2811	1	ISM	ENSMUSG00000032252.15	ENSMUST00000034785.8	4626	3	10540	8	10540	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAATGTACTTGGATA	9239	False	NA	NA	False	AATAAA	-13	NA	61967348	61964537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_61964500_61967300
ENSMUSG00000032252.15_6	chr9	-	4345	3	FSM	ENSMUSG00000032252.15	ENSMUST00000034785.8	4626	3	273	8	273	-8	multi-exon	FALSE	canonical	3	150	junction_1	12.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAATGTACTTGGATA	NA	False	NA	NA	False	AATAAA	-13	NA	61977615	61964537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_61968318_61975666_61975913_61977296
ENSMUSG00000032252.15_7	chr9	-	4795	4	NIC	ENSMUSG00000032252.15	novel	4850	5	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	1	13	junction_3	71.2101740546173	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAATGTACTTGGATA	NA	False	NA	NA	False	AATAAA	-13	NA	62029936	61964537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_61968318_61975666_61975913_61977296_61977896_62029766
ENSMUSG00000032253.14_0	chr9	-	3168	1	ISM	ENSMUSG00000032253.14	ENSMUST00000034787.12	10756	40	105926	264	22598	-264	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATTTTGTAGAGCCTC	NA	False	NA	-6	True	AATAAA	-19	NA	82751643	82748475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_82748500_82751600
ENSMUSG00000032253.14_1	chr9	-	10448	40	FSM	ENSMUSG00000032253.14	ENSMUST00000034787.12	10756	40	44	264	44	-264	multi-exon	FALSE	canonical	3	34	junction_28	10.5485322148115	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATTTTGTAGAGCCTC	NA	False	NA	-6	True	AATAAA	-19	NA	82857525	82748475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_82753915_82757342_82757541_82758061_82758322_82758778_82758943_82759242_82759396_82762164_82762315_82763373_82763425_82763722_82763793_82766885_82767012_82768674_82768796_82769566_82769723_82772166_82772229_82772413_82772526_82775375_82775459_82775577_82775703_82776286_82776395_82778074_82778195_82782674_82782907_82785176_82785254_82787701_82787843_82788993_82789112_82790743_82790928_82791839_82791978_82795740_82795967_82797348_82797478_82808449_82808585_82809087_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
ENSMUSG00000032253.14_9	chr9	-	5811	3	ISM	ENSMUSG00000032253.14	ENSMUST00000190774.2	3830	17	20187	-3896	16003	-267	3prime_fragment	FALSE	canonical	3	58	junction_2	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGCCATTTTGTAGAGC	NA	False	NA	-9	True	AATAAA	-16	NA	82758238	82748478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_82753915_82757342_82757541_82758061
ENSMUSG00000032254.11_0	chr9	-	3077	22	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	7	-2	combination_of_known_junctions	FALSE	canonical	3	131	junction_5	37.7146464629211	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACTTGTGTGGTGGCCA	NA	False	NA	-5	True	AATAAA	-16	NA	61854049	61824563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ENSMUSG00000032254.11_12	chr9	-	3120	23	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	3	50	junction_16	70.2958329649162	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACTTGTGTGGTGGCCA	NA	False	NA	-5	True	AATAAA	-16	NA	61854050	61824563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ENSMUSG00000032254.11_21	chr9	-	2271	2	ISM	ENSMUSG00000032254.11	ENSMUST00000215319.2	569	4	470	-207	470	-4	intron_retention	FALSE	canonical	3	321	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCAAACTTGTGTGGTGGC	NA	False	NA	-7	True	AATAAA	-14	NA	61828056	61824565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_61824962_61826181
ENSMUSG00000032254.11_3	chr9	-	3384	23	FSM	ENSMUSG00000032254.11	ENSMUST00000034815.9	3398	23	12	2	-2	-2	multi-exon	FALSE	canonical	3	138	junction_5	42.1913194628531	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACTTGTGTGGTGGCCA	NA	False	NA	-5	True	AATAAA	-16	NA	61854044	61824563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ENSMUSG00000032254.11_4	chr9	-	3431	24	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	7	-2	combination_of_known_junctions	FALSE	canonical	3	50	junction_17	70.6780554601603	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACTTGTGTGGTGGCCA	NA	False	NA	-5	True	AATAAA	-16	NA	61854049	61824563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ENSMUSG00000032258.16_0	chr9	-	4091	8	NNC	ENSMUSG00000032258.16	novel	4160	8	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	9.37647947509825	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGGATCCTTTATTTG	NA	False	NA	-8	True	AATAAA	-11	NA	83323142	83275474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83323089
ENSMUSG00000032258.16_1	chr9	-	4086	8	NIC	ENSMUSG00000032258.16	novel	4160	8	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	3	11	junction_7	6.67618368317024	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACACTGGGATCCTTTA	NA	False	NA	-12	True	AATAAA	-7	NA	83323145	83275478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83323093
ENSMUSG00000032258.16_13	chr9	-	4287	9	NIC	ENSMUSG00000032258.16	novel	4160	8	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	10.5948100502085	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACACTGGGATCCTTTA	NA	False	NA	-12	True	AATAAA	-7	NA	83323145	83275478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83310932_83311002_83322961
ENSMUSG00000032258.16_19	chr9	-	4152	9	NIC	ENSMUSG00000032258.16	novel	4160	8	NA	NA	4	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	10.5948100502085	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACACTGGGATCCTTTA	NA	False	NA	-12	True	AATAAA	-7	NA	83323142	83275478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83310932_83311002_83323093
ENSMUSG00000032258.16_2	chr9	-	3848	5	ISM	ENSMUSG00000032258.16	ENSMUST00000034791.15	4160	8	38571	1	-587	-1	3prime_fragment	FALSE	canonical	3	20	junction_1	5.1234753829798	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGGATCCTTTATTTGAA	NA	False	NA	-6	True	AATAAA	-13	NA	83284509	83275472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664
ENSMUSG00000032258.16_3	chr9	-	4223	8	FSM	ENSMUSG00000032258.16	ENSMUST00000034791.15	4160	8	-70	7	-4	-7	multi-exon	FALSE	canonical	3	4	junction_7	8.75051018920774	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACACTGGGATCCTTTA	NA	False	NA	-12	True	AATAAA	-7	NA	83323150	83275478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83322961
ENSMUSG00000032258.16_9	chr9	-	1620	1	ISM	ENSMUSG00000032258.16	ENSMUST00000034791.15	4160	8	45982	7	6824	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACACTGGGATCCTTTA	NA	False	NA	-12	True	AATAAA	-7	NA	83277098	83275478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_83275500_83277100
ENSMUSG00000032261.17_0	chr9	+	3512	4	FSM	ENSMUSG00000032261.17	ENSMUST00000113215.10	4565	4	-4	1057	-3	-1057	multi-exon	FALSE	canonical	3	104	junction_2	12.4988888395018	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGGAGTTGTTTCTTC	NA	False	NA	NA	False	AATAAA	-21	NA	83430376	83482342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_83430557_83459488_83459675_83476710_83476792_83479277
ENSMUSG00000032261.17_4	chr9	+	2987	1	ISM	ENSMUSG00000032261.17	ENSMUST00000113215.10	4565	4	50029	3	21526	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCAGTTTTATTTTTCC	NA	False	NA	6	True	AATAAA	-13	NA	83480409	83483396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_83480400_83483400
ENSMUSG00000032262.14_0	chr9	-	3010	6	FSM	ENSMUSG00000032262.14	ENSMUST00000034796.14	3001	6	-18	9	7	-9	multi-exon	FALSE	canonical	3	34	junction_4	3.49857113690718	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGTGACTCTGTCCGTC	NA	False	NA	-8	True	AATAAA	-17	NA	83688323	83660753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_83662863_83665188_83665317_83667087_83667260_83670321_83670403_83672029_83672218_83687991
ENSMUSG00000032262.14_3	chr9	-	1272	1	ISM	ENSMUSG00000032262.14	ENSMUST00000034796.14	3001	6	26280	9	26280	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGTGACTCTGTCCGTC	NA	False	NA	-8	True	AATAAA	-17	NA	83662025	83660753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_83660800_83662000
ENSMUSG00000032263.15_0	chr9	+	1471	11	FSM	ENSMUSG00000032263.15	ENSMUST00000034801.11	1472	11	1	0	1	0	multi-exon	FALSE	canonical	3	595	junction_3	45.3898667105335	466	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTGTGTGTGTGTCCTCT	NA	False	NA	NA	False	AATAAA	-19	NA	83807203	84006292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_83807413_83834576_83834655_83835765_83835835_83870828_83870963_83871193_83871350_83873766_83873876_83892306_83892405_83894561_83894673_83951157_83951245_84004286_84004436_84006021
ENSMUSG00000032264.10_0	chr9	+	2855	16	FSM	ENSMUSG00000032264.10	ENSMUST00000034803.10	2863	16	1	7	1	-7	multi-exon	FALSE	canonical	3	236	junction_12	29.9965923990635	525	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTGAGAGTGAGTGTCT	NA	False	NA	13	True	AGTAAA	-9	NA	48966913	48990065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881_48982954_48984502_48984673_48985318_48985450_48986204_48986337_48988751_48988955_48989498
ENSMUSG00000032267.9_0	chr9	+	4202	24	FSM	ENSMUSG00000032267.9	ENSMUST00000047349.8	4133	24	-70	1	10	-1	multi-exon	FALSE	canonical	3	612	junction_8	78.9995812484415	1372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATGTAGCATGACCCTT	NA	False	NA	12	True	AATAAA	-18	NA	48896694	48953809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
ENSMUSG00000032267.9_12	chr9	+	4199	24	NNC	ENSMUSG00000032267.9	novel	4133	24	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_8	163.90230618736	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATGTAGCATGACCCTT	NA	False	NA	12	True	AATAAA	-18	NA	48896694	48953809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922565_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
ENSMUSG00000032268.14_7	chr9	+	1675	8	ISM	ENSMUSG00000032268.14	ENSMUST00000170246.8	1491	12	3074	-473	152	-11	3prime_fragment	TRUE	canonical	2	3	junction_4	3.6922422809486	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATGTATAATCTGGGT	3772	False	NA	-4	True	ATTAAA	-4	NA	49020453	49028874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_49020756_49022767_49022812_49023487_49023651_49024423_49024603_49025793_49025893_49026332_49026476_49026764_49026918_49028282
ENSMUSG00000032269.9_1	chr9	-	2115	9	FSM	ENSMUSG00000032269.9	ENSMUST00000217289.2	1987	9	-135	7	-57	-6	multi-exon	FALSE	canonical	1	1	junction_3	0.927024810886958	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTATTCTCTGTCTGTG	NA	False	NA	NA	False	AATAAA	-10	NA	48822456	48810519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_48811291_48811860_48812083_48812173_48812385_48812717_48812879_48815876_48816047_48817582_48817693_48818653_48818699_48819894_48820062_48822198
ENSMUSG00000032271.14_0	chr9	-	886	3	FSM	ENSMUSG00000032271.14	ENSMUST00000034808.12	1043	3	141	16	65	-2	multi-exon	FALSE	canonical	3	43	junction_2	2.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGCTGTGTCTCTGAATG	NA	False	NA	-6	True	ATTAAA	-17	NA	48516312	48503192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_48503663_48514653_48514862_48516104
ENSMUSG00000032278.12_0	chr9	-	2825	8	FSM	ENSMUSG00000032278.12	ENSMUST00000034817.11	3566	8	31	710	-24	-710	multi-exon	FALSE	canonical	1	1	junction_5	2.96922995583236	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATTAAACAATAAAA	NA	False	NA	NA	False	ACTAAA	-10	NA	61934107	61861729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_61863570_61868810_61868953_61871009_61871107_61876062_61876190_61879907_61880114_61883353_61883482_61896274_61896421_61933968
ENSMUSG00000032279.12_0	chr9	+	1701	11	FSM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	-23	725	7	0	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	1854	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAATCCATAATGAATGA	NA	False	NA	46	True	AATAAA	-13	NA	54493771	54511220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUSG00000032280.17_0	chr9	+	5098	20	FSM	ENSMUSG00000032280.17	ENSMUST00000034820.16	4646	20	-462	10	13	-9	multi-exon	FALSE	canonical	3	85	junction_13	43.258483548224	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAAAGGTTGGTTTGA	NA	False	NA	26	True	AATGAA	-26	NA	61279677	61325759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316690_61317217_61317403_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ENSMUSG00000032280.17_1	chr9	+	5119	20	FSM	ENSMUSG00000032280.17	ENSMUST00000162583.8	4299	20	-829	9	7	-9	multi-exon	FALSE	canonical	3	95	junction_6	39.4816132387409	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAAAGGTTGGTTTGA	NA	False	NA	26	True	AATGAA	-26	NA	61279671	61325759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316690_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ENSMUSG00000032280.17_2	chr9	+	5126	20	FSM	ENSMUSG00000032280.17	ENSMUST00000162973.8	4114	20	-1028	16	6	-12	multi-exon	FALSE	canonical	3	64	junction_12	44.235268765659	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTTAAAAAGGTTGGTT	NA	False	NA	23	True	AATGAA	-23	NA	61279670	61325756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316699_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ENSMUSG00000032280.17_4	chr9	+	5122	20	NIC	ENSMUSG00000032280.17	novel	4299	20	NA	NA	1	-9	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	48.17437164201	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAAAGGTTGGTTTGA	NA	False	NA	26	True	AATGAA	-26	NA	61279665	61325759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309137_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316690_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ENSMUSG00000032280.17_5	chr9	+	5113	20	FSM	ENSMUSG00000032280.17	ENSMUST00000159050.8	2304	20	-1048	-1761	7	-9	multi-exon	FALSE	canonical	3	64	junction_12	47.5364854771947	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAAAGGTTGGTTTGA	NA	False	NA	26	True	AATGAA	-26	NA	61279671	61325759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316699_61317217_61317403_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ENSMUSG00000032280.17_7	chr9	+	4509	20	NIC	ENSMUSG00000032280.17	novel	4646	20	NA	NA	1	9	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	52.9521291152616	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGATACCGTCTCCCCTT	NA	False	NA	24	True	AATAAA	-25	NA	61279665	61325128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301995_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316690_61317217_61317403_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ENSMUSG00000032280.17_70	chr9	+	2655	6	ISM	ENSMUSG00000032280.17	ENSMUST00000159140.2	8638	11	9892	-642	2416	-9	3prime_fragment	FALSE	canonical	3	193	junction_2	15.9172862008572	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAAAGGTTGGTTTGA	NA	False	NA	26	True	AATGAA	-26	NA	61319634	61325759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ENSMUSG00000032280.17_71	chr9	+	2367	5	ISM	ENSMUSG00000032280.17	ENSMUST00000159140.2	8638	11	10523	-645	3047	-6	3prime_fragment	FALSE	canonical	3	193	junction_1	16.6583312489577	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAGGTTGGTTTGATTG	NA	False	NA	29	True	AATGAA	-29	NA	61320265	61325762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ENSMUSG00000032280.17_77	chr9	+	1292	1	ISM	ENSMUSG00000032280.17	ENSMUST00000178113.8	5205	20	44824	16	7253	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGGTTGGTTTGATTGT	NA	False	NA	30	True	AATGAA	-30	NA	61324471	61325763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_61324500_61325800
ENSMUSG00000032280.17_8	chr9	+	4518	20	NIC	ENSMUSG00000032280.17	novel	4299	20	NA	NA	-3	1	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	50.0910528278973	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCCTTTGATAAGATACC	NA	False	NA	14	True	AATAAA	-15	NA	61279661	61325118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301995_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316690_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
ENSMUSG00000032281.12_0	chr9	-	2695	14	FSM	ENSMUSG00000032281.12	ENSMUST00000034822.12	2880	14	177	8	2	-8	multi-exon	FALSE	canonical	0	0	junction_5	2.25320284859643	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGTACCGGATGTCTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	54568977	54512168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_54512761_54516299_54516547_54516978_54517119_54522019_54522238_54523150_54523382_54525305_54525488_54529149_54529327_54529720_54529871_54529959_54530041_54534714_54534836_54535153_54535243_54535689_54535911_54549879_54549981_54568832
ENSMUSG00000032285.16_0	chr9	+	2999	7	FSM	ENSMUSG00000032285.16	ENSMUST00000070070.8	3003	7	1	3	1	-3	multi-exon	FALSE	canonical	3	8	junction_3	1.95078331845327	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAAATGGCTTTGCTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	54606843	54623596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_54607145_54613346_54613528_54615666_54615772_54616416_54616645_54617785_54618017_54621553_54621655_54621744
ENSMUSG00000032288.10_0	chr9	+	914	1	FSM	ENSMUSG00000032288.10	ENSMUST00000034827.10	924	1	9	1	9	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTTTTGTCTGGTCGTTC	NA	False	NA	17	True	AATAAA	-26	NA	56844767	56845681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_56844800_56845700
ENSMUSG00000032289.16_0	chr9	-	5964	18	NIC	ENSMUSG00000032289.16	novel	8796	18	NA	NA	-5	-35	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	5.36359637649641	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGAAAAGCGTGTGCTG	NA	False	NA	NA	False	ATTAAA	-41	NA	60429334	59877036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_59879822_59883470_59883616_59887051_59887232_59890006_59890181_59894541_59894716_59895207_59895413_59896246_59896377_59904288_59904565_59907223_59907321_59910133_59910310_59964133_59964339_60159932_60160070_60283235_60283339_60301381_60301830_60335446_60335809_60389705_60389779_60404380_60404489_60429148
ENSMUSG00000032289.16_1	chr9	-	2868	1	ISM	ENSMUSG00000032289.16	ENSMUST00000171654.8	8522	17	527314	14	31776	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTGCTTAGTTAGC	NA	False	NA	NA	False	AATAAA	-7	NA	59877095	59874227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_59874200_59877100
ENSMUSG00000032289.16_7	chr9	-	4516	11	ISM	ENSMUSG00000032289.16	ENSMUST00000034829.6	4816	12	84207	24	-55425	-24	3prime_fragment	FALSE	canonical	2	3	junction_8	4.19642705167146	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGCTGTCTCCCTTTCA	NA	False	NA	NA	False	AATGAA	-4	NA	59964296	59877025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_59879822_59883470_59883616_59887051_59887232_59890006_59890181_59894541_59894716_59895207_59895413_59896246_59896377_59904288_59904565_59907223_59907321_59910133_59910310_59964133
ENSMUSG00000032290.8_0	chr9	+	4040	14	NNC	ENSMUSG00000032290.8	novel	4101	13	NA	NA	24	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	11.2291885083568	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAACCCTTTTAGTTTCA	NA	False	NA	NA	False	TATAAA	-13	NA	56902230	56970086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_56902941_56927187_56927332_56929491_56929582_56930242_56930368_56934659_56934766_56940389_56940501_56943766_56944096_56951658_56951753_56955474_56955542_56963997_56964077_56964994_56965146_56967137_56967346_56968228_56969670_56969701
ENSMUSG00000032290.8_1	chr9	+	4057	13	FSM	ENSMUSG00000032290.8	ENSMUST00000034832.8	4101	13	39	5	39	-5	multi-exon	FALSE	canonical	3	24	junction_7	5.9207732227772	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAACCCTTTTAGTTTCA	NA	False	NA	NA	False	TATAAA	-13	NA	56902245	56970086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_56902941_56927187_56927332_56929491_56929582_56930242_56930368_56934659_56934766_56940389_56940501_56943766_56944096_56951658_56951753_56955474_56955542_56963997_56964077_56964994_56965146_56967137_56967346_56968228
ENSMUSG00000032290.8_10	chr9	+	3072	10	ISM	ENSMUSG00000032290.8	ENSMUST00000034832.8	4101	13	28086	11	777	-11	3prime_fragment	FALSE	canonical	3	24	junction_4	6.40794260235387	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGATTAAACCCTTTTA	NA	False	NA	NA	False	TATAAA	-7	NA	56930292	56970080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_56930368_56934659_56934766_56940389_56940501_56943766_56944096_56951658_56951753_56955474_56955542_56963997_56964077_56964994_56965146_56967137_56967346_56968228
ENSMUSG00000032291.9_5	chr9	+	748	4	FSM	ENSMUSG00000032291.9	ENSMUST00000034830.9	802	4	53	1	53	-1	multi-exon	FALSE	canonical	3	250	junction_3	35.3679076125361	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCCGGGCTCTTTCTTTG	NA	False	NA	17	True	ATTAAA	-13	NA	54672084	54680393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_54672256_54672766_54672946_54675667_54675782_54680109
ENSMUSG00000032292.9_0	chr9	-	1737	7	ISM	ENSMUSG00000032292.9	ENSMUST00000034831.3	2037	8	717	62	-6	-62	3prime_fragment	TRUE	canonical	1	3	junction_6	3.89087250997625	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCATGCACTTTGCTG	NA	False	NA	-7	True	NA	NA	NA	59856683	59850115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_59850803_59854244_59854351_59854595_59854837_59855645_59855804_59855885_59856108_59856207_59856312_59856464
ENSMUSG00000032292.9_1	chr9	-	1976	8	FSM	ENSMUSG00000032292.9	ENSMUST00000034831.3	2037	8	-1	62	-1	-62	multi-exon	FALSE	canonical	1	3	junction_6	3.8438925848782	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCATGCACTTTGCTG	NA	False	NA	-7	True	NA	NA	NA	59857401	59850115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_59850803_59854244_59854351_59854595_59854837_59855645_59855804_59855885_59856108_59856207_59856312_59856464_59856592_59857070
ENSMUSG00000032292.9_3	chr9	-	1900	6	ISM	ENSMUSG00000032292.9	ENSMUST00000034831.3	2037	8	707	62	-16	-62	intron_retention	FALSE	canonical	2	5	junction_4	3.16227766016838	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCATGCACTTTGCTG	NA	False	NA	-7	True	NA	NA	NA	59856693	59850115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_59850803_59854244_59854351_59854595_59854837_59855645_59855804_59855885_59856108_59856207
ENSMUSG00000032293.9_0	chr9	+	5799	22	FSM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	-35	6	-35	-6	multi-exon	TRUE	canonical	3	193	junction_6	38.4690587449917	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATTTGACTCGTTGTG	2591	False	NA	8	True	AATAAA	-13	NA	54771037	54819808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54791180_54791400_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
ENSMUSG00000032293.9_23	chr9	+	4907	16	ISM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	22767	6	-10917	-6	3prime_fragment	FALSE	canonical	3	222	junction_8	24.6706303121748	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATTTGACTCGTTGTG	NA	False	NA	8	True	AATAAA	-13	NA	54793839	54819808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
ENSMUSG00000032293.9_30	chr9	+	4191	11	ISM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	32719	9	-965	-9	3prime_fragment	FALSE	canonical	3	222	junction_3	29.4251593028823	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATCACATTTGACTCGTT	2003	False	NA	5	True	AATAAA	-10	NA	54803791	54819805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
ENSMUSG00000032293.9_36	chr9	+	3582	6	ISM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	40119	6	1703	-6	3prime_fragment	FALSE	canonical	3	236	junction_3	24.9751876869825	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATTTGACTCGTTGTG	9403	False	NA	8	True	AATAAA	-13	NA	54811191	54819808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
ENSMUSG00000032293.9_4	chr9	+	5579	21	NIC	ENSMUSG00000032293.9	novel	5770	22	NA	NA	-34	-6	combination_of_known_splicesites	FALSE	canonical	3	11	junction_4	64.8093164599041	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATTTGACTCGTTGTG	2592	False	NA	8	True	AATAAA	-13	NA	54771038	54819808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
ENSMUSG00000032293.9_41	chr9	+	3063	2	ISM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	44971	5	6555	-5	3prime_fragment	FALSE	canonical	3	266	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATTTGACTCGTTGTGT	NA	False	NA	9	True	AATAAA	-14	NA	54816043	54819809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_54816212_54816914
ENSMUSG00000032293.9_43	chr9	+	1825	1	ISM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	46913	4	8497	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTTGACTCGTTGTGTT	NA	False	NA	10	True	AATAAA	-15	NA	54817985	54819810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_54818000_54819800
ENSMUSG00000032294.18_0	chr9	+	2217	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	209	6	1	-6	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	27115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTGTTGTGTTTTGTTT	1873	False	NA	14	True	AATAAA	-14	NA	59563859	59586652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032295.16_12	chr9	+	3346	27	NIC	ENSMUSG00000032295.16	novel	3820	26	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_6	65.9648911460129	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTATAATGGTGCCTTG	NA	False	NA	13	True	AATAAA	-14	NA	57038051	57049487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043486_57043610_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
ENSMUSG00000032295.16_2	chr9	+	3225	26	FSM	ENSMUSG00000032295.16	ENSMUST00000160147.8	3820	26	79	516	1	-1	multi-exon	FALSE	canonical	2	160	junction_17	33.744593641056	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATAATGGTGCCTTGCTG	NA	False	NA	16	True	AATAAA	-17	NA	57038052	57049490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
ENSMUSG00000032297.12_0	chr9	+	2790	12	FSM	ENSMUSG00000032297.12	ENSMUST00000034840.10	2765	12	-30	5	-30	-4	multi-exon	TRUE	canonical	0	0	junction_4	0.953462589245592	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGCTTCCTGCCTGCTTC	NA	False	NA	NA	False	TATAAA	-13	NA	59485589	59514570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_59485923_59489558_59489642_59497917_59497967_59509859_59509989_59510082_59510163_59510277_59510422_59510517_59510651_59510730_59510881_59511412_59511494_59511582_59511727_59512239_59512396_59513262
ENSMUSG00000032298.14_0	chr9	-	1698	10	FSM	ENSMUSG00000032298.14	ENSMUST00000190245.7	1693	10	-5	0	-5	0	multi-exon	FALSE	canonical	3	40	junction_9	6.09391520035648	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCTTGGTACTTCTTGG	NA	False	NA	-11	True	AATAAA	-5	NA	57055416	57050083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57050611_57050734_57050898_57051041_57051104_57051262_57051291_57051470_57051599_57051921_57052022_57052228_57052293_57052381_57052502_57053884_57054342_57055367
ENSMUSG00000032298.14_3	chr9	-	3700	6	NIC	ENSMUSG00000032298.14	novel	1693	10	NA	NA	13	11	intron_retention	FALSE	canonical	3	40	junction_5	7.31026675299883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTTGGGCAGGCTACCT	NA	False	NA	0	True	AATAAA	-16	NA	57055398	57050072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57050611_57050734_57051291_57051470_57052022_57052228_57052293_57052381_57054342_57055367
ENSMUSG00000032298.14_7	chr9	-	1661	9	FSM	ENSMUSG00000032298.14	ENSMUST00000034842.5	1170	9	-26	-465	-26	9	multi-exon	FALSE	canonical	3	44	junction_8	5.10973335899242	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTCTTGGGCAGGCTAC	NA	False	NA	-2	True	AATAAA	-14	NA	57054344	57050074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57050611_57050734_57050898_57051041_57051104_57051262_57051291_57051470_57051599_57051921_57052022_57052228_57052293_57052381_57052502_57053884
ENSMUSG00000032299.11_0	chr9	-	797	7	FSM	ENSMUSG00000032299.11	ENSMUST00000214072.2	1941	7	1138	6	0	0	multi-exon	FALSE	canonical	3	898	junction_5	106.241470245851	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGTATGGGTCTTGCTT	7469	False	NA	-6	True	AATAAA	-13	NA	57064423	57062324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350
ENSMUSG00000032299.11_1	chr9	-	2163	6	ISM	ENSMUSG00000032299.11	ENSMUST00000214072.2	1941	7	-2	6	-2	0	intron_retention	FALSE	canonical	3	898	junction_5	102.766531516832	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGTATGGGTCTTGCTT	6329	False	NA	-6	True	AATAAA	-13	NA	57065563	57062324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058
ENSMUSG00000032299.11_2	chr9	-	830	8	FSM	ENSMUSG00000032299.11	ENSMUST00000065358.9	858	8	26	2	11	0	multi-exon	FALSE	canonical	3	701	junction_7	157.218553197095	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGTATGGGTCTTGCTT	6303	False	NA	-6	True	AATAAA	-13	NA	57065589	57062324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555
ENSMUSG00000032299.11_4	chr9	-	1282	6	NIC	ENSMUSG00000032299.11	novel	858	8	NA	NA	4	0	intron_retention	FALSE	canonical	3	701	junction_5	174.995542800381	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGTATGGGTCTTGCTT	6296	False	NA	-6	True	AATAAA	-13	NA	57065596	57062324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57064423_57065555
ENSMUSG00000032299.11_6	chr9	-	1045	7	NIC	ENSMUSG00000032299.11	novel	858	8	NA	NA	-17	0	intron_retention	FALSE	canonical	3	701	junction_6	167.641151140033	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGTATGGGTCTTGCTT	6314	False	NA	-6	True	AATAAA	-13	NA	57065578	57062324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064423_57065555
ENSMUSG00000032299.11_7	chr9	-	765	7	NIC	ENSMUSG00000032299.11	novel	858	8	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_5	406.295322258193	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGTATGGGTCTTGCTT	6302	False	NA	-6	True	AATAAA	-13	NA	57065590	57062324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064350_57064423_57065555
ENSMUSG00000032300.8_0	chr9	-	2455	2	ISM	ENSMUSG00000032300.8	ENSMUST00000034846.7	4152	3	4983	2	3880	-2	3prime_fragment	FALSE	canonical	3	41	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGGGATCTAGCTTTGT	NA	False	NA	-9	True	ATTAAA	-19	NA	57164912	57160401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_57161613_57163668
ENSMUSG00000032300.8_1	chr9	-	4130	3	FSM	ENSMUSG00000032300.8	ENSMUST00000034846.7	4152	3	20	2	5	-2	multi-exon	FALSE	canonical	3	41	junction_1	39.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGGGATCTAGCTTTGT	NA	False	NA	-9	True	ATTAAA	-19	NA	57169875	57160401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57161613_57163668_57166424_57169711
ENSMUSG00000032300.8_3	chr9	-	1164	1	ISM	ENSMUSG00000032300.8	ENSMUST00000034846.7	4152	3	8331	1	7228	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGGATCTAGCTTTGTA	NA	False	NA	-8	True	ATTAAA	-20	NA	57161564	57160400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_57160400_57161600
ENSMUSG00000032300.8_5	chr9	-	5054	3	NIC	ENSMUSG00000032300.8	novel	4152	3	NA	NA	239	-2	combination_of_known_junctions	FALSE	canonical	1	3	junction_2	19	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGGGATCTAGCTTTGT	NA	False	NA	-9	True	ATTAAA	-19	NA	57169591	57160401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57161613_57163668_57166424_57168503
ENSMUSG00000032301.14_1	chr9	+	1139	9	FSM	ENSMUSG00000032301.14	ENSMUST00000034848.14	1165	9	25	1	0	-1	multi-exon	FALSE	canonical	3	1650	junction_8	116.746252616519	772	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTATGGTGAAAGGATACT	NA	False	NA	1	True	AATAAA	-14	NA	54858098	54865313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
ENSMUSG00000032305.16_0	chr9	+	2977	5	FSM	ENSMUSG00000032305.16	ENSMUST00000114200.10	3017	5	39	1	-15	1	multi-exon	FALSE	canonical	0	0	junction_4	22.8582589013249	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAGCTGTACTGTGCTGC	NA	False	NA	13	True	AATAAA	-13	NA	57444884	57450466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57445118_57445306_57445395_57446093_57446172_57446528_57446578_57447937
ENSMUSG00000032305.16_1	chr9	+	2935	4	FSM	ENSMUSG00000032305.16	ENSMUST00000093833.6	3001	4	67	-1	-22	1	multi-exon	FALSE	canonical	3	38	junction_3	8.73053390247253	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAGCTGTACTGTGCTGC	NA	False	NA	13	True	AATAAA	-13	NA	57444877	57450466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57445118_57445306_57445395_57446093_57446172_57447937
ENSMUSG00000032305.16_2	chr9	+	1952	5	NNC	ENSMUSG00000032305.16	novel	3017	5	NA	NA	10	-1085	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	22.8582589013249	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCCTCTTTGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	57444820	57449380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_57445118_57445306_57445395_57446093_57446172_57446528_57446578_57447940
ENSMUSG00000032305.16_6	chr9	+	1989	1	ISM	ENSMUSG00000032305.16	ENSMUST00000114200.10	3017	5	3632	1	3578	1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAGCTGTACTGTGCTGC	NA	False	NA	13	True	AATAAA	-13	NA	57448477	57450466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_57448500_57450500
ENSMUSG00000032306.15_0	chr9	-	1744	8	FSM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	21	15	21	-15	multi-exon	FALSE	canonical	3	201	junction_3	33.2393914333151	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGATACAGAGTGAAGAGCA	8972	False	NA	-23	True	ATTAAA	-15	NA	57460025	57451553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
ENSMUSG00000032306.15_1	chr9	-	96	1	ISM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	8400	12	5309	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAGAGTGAAGAGCAGTC	NA	False	NA	-20	True	ATTAAA	-18	NA	57451646	57451550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_57451600_57451600
ENSMUSG00000032306.15_13	chr9	-	2390	3	ISM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	4857	15	1766	-15	3prime_fragment	FALSE	canonical	3	232	junction_2	25.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGATACAGAGTGAAGAGCA	NA	False	NA	-23	True	ATTAAA	-15	NA	57455189	57451553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_57452222_57452477_57452687_57453676
ENSMUSG00000032306.15_6	chr9	-	1707	7	ISM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	487	15	-10	-15	3prime_fragment	FALSE	canonical	3	201	junction_3	33.0134652662953	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGATACAGAGTGAAGAGCA	9438	False	NA	-23	True	ATTAAA	-15	NA	57459559	57451553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429
ENSMUSG00000032307.17_0	chr9	+	2923	13	FSM	ENSMUSG00000032307.17	ENSMUST00000059555.15	3456	13	525	8	-16	-8	multi-exon	TRUE	canonical	3	762	junction_1	63.2035402489449	1144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCAGTTTGTCACCTT	NA	False	NA	2	True	AATAAA	-10	NA	55056662	55114805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_55057111_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
ENSMUSG00000032308.10_0	chr9	+	2802	16	FSM	ENSMUSG00000032308.10	ENSMUST00000053230.7	2826	16	17	7	17	-7	multi-exon	FALSE	canonical	3	37	junction_2	6.816320284598	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATGCATTTCTTCTT	NA	False	NA	26	True	ATTAAA	-10	NA	57496751	57503509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57496970_57497606_57497748_57497943_57498065_57498496_57498602_57499276_57499421_57499613_57499697_57500101_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501264_57501330_57501416_57501496_57501566_57501608_57501889_57501938_57502065_57502133_57502225
ENSMUSG00000032308.10_15	chr9	+	2750	17	NNC	ENSMUSG00000032308.10	novel	2826	16	NA	NA	17	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	12.5847129486532	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATGCATTTCTTCTT	NA	False	NA	26	True	ATTAAA	-10	NA	57496751	57503509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_57496970_57497606_57497748_57497943_57498065_57498496_57498602_57499276_57499421_57499613_57499697_57500101_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501264_57501330_57501416_57501496_57501566_57501608_57501889_57501938_57502065_57502133_57502225_57503175_57503226
ENSMUSG00000032308.10_8	chr9	+	2746	17	NNC	ENSMUSG00000032308.10	novel	2826	16	NA	NA	17	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	12.5847129486532	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATGCATTTCTTCTT	NA	False	NA	26	True	ATTAAA	-10	NA	57496751	57503509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_57496970_57497606_57497748_57497943_57498065_57498496_57498602_57499276_57499421_57499613_57499697_57500101_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501264_57501330_57501416_57501496_57501566_57501608_57501889_57501938_57502065_57502133_57502225_57503175_57503230
ENSMUSG00000032309.16_0	chr9	+	2055	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	53	4	-8	-2	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	1054	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGGTGTTGTAATTAT	NA	False	NA	7	True	AATAAA	-14	NA	55116261	55131713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUSG00000032312.8_0	chr9	-	2725	13	FSM	ENSMUSG00000032312.8	ENSMUST00000034863.8	2749	13	21	3	-15	-2	multi-exon	FALSE	canonical	3	100	junction_12	11.433381924095	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCCAGCCTCGGCGCTTC	NA	False	NA	-28	True	AATAAA	-20	NA	57552915	57533931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57552277
ENSMUSG00000032312.8_1	chr9	-	2776	14	NIC	ENSMUSG00000032312.8	novel	2390	15	NA	NA	-14	-1	combination_of_known_junctions	FALSE	canonical	2	8	junction_13	41.3604447574315	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCAGCCTCGGCGCTTCC	NA	False	NA	-27	True	AATAAA	-21	NA	57552914	57533930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57541277_57541329_57552277
ENSMUSG00000032313.12_0	chr9	+	1428	3	ISM	ENSMUSG00000032313.12	ENSMUST00000034862.5	2408	11	103386	4	97134	-4	3prime_fragment	FALSE	canonical	2	4	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATATCTGGCTAGTAGAG	NA	False	NA	NA	False	AATAAA	-14	NA	55337618	55345625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_55337749_55342474_55342538_55344390
ENSMUSG00000032313.12_2	chr9	+	2431	11	FSM	ENSMUSG00000032313.12	ENSMUST00000034862.5	2408	11	-30	7	6	-7	multi-exon	TRUE	canonical	0	0	junction_1	1.98997487421324	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGATATCTGGCTAGTA	NA	False	NA	NA	False	AATAAA	-11	NA	55234202	55345622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_55234285_55284763_55284898_55287962_55288152_55305024_55305180_55307857_55307932_55321147_55321205_55322223_55322363_55325291_55325408_55337558_55337749_55342474_55342538_55344390
ENSMUSG00000032314.15_0	chr9	-	1298	12	FSM	ENSMUSG00000032314.15	ENSMUST00000034866.9	1392	12	81	13	-42	-13	multi-exon	FALSE	canonical	3	1517	junction_8	89.5680174619608	1087	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATCCTTTAAGATTACT	NA	False	NA	-26	True	AATAAA	-17	NA	55419446	55361804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55407301_55407449_55419314
ENSMUSG00000032316.9_0	chr9	-	1749	13	FSM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	745	2	-1	0	multi-exon	FALSE	canonical	3	232	junction_10	47.1024297556813	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCTGGTACCAGTGTG	9813	False	NA	-11	True	AATAAA	-19	NA	57672398	57657993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
ENSMUSG00000032316.9_1	chr9	-	3847	12	FSM	ENSMUSG00000032316.9	ENSMUST00000216095.2	3924	12	-10	87	1	0	multi-exon	FALSE	canonical	3	243	junction_11	42.6560334546315	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCTGGTACCAGTGTG	9815	False	NA	-11	True	AATAAA	-19	NA	57672396	57657993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57668324_57668998_57669151_57672356
ENSMUSG00000032316.9_11	chr9	-	2362	12	FSM	ENSMUSG00000032316.9	ENSMUST00000215233.2	2363	12	1	0	1	0	multi-exon	FALSE	canonical	3	232	junction_9	49.1934955049954	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCTGGTACCAGTGTG	9815	False	NA	-11	True	AATAAA	-19	NA	57672396	57657993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
ENSMUSG00000032316.9_16	chr9	-	1708	12	ISM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	3992	2	2440	0	3prime_fragment	FALSE	canonical	3	232	junction_10	44.4674641946314	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCTGGTACCAGTGTG	8052	False	NA	-11	True	AATAAA	-19	NA	57669151	57657993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998
ENSMUSG00000032316.9_3	chr9	-	1651	12	NIC	ENSMUSG00000032316.9	novel	2363	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	91.1213884772205	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCTGGTACCAGTGTG	9814	False	NA	-11	True	AATAAA	-19	NA	57672397	57657993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57668106_57668324_57668998_57669151_57672356
ENSMUSG00000032320.8_0	chr9	+	1823	7	FSM	ENSMUSG00000032320.8	ENSMUST00000114276.3	2024	7	13	188	0	-188	multi-exon	FALSE	canonical	3	320	junction_5	26.0666879795309	423	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTGGGTTTTTGTTTTT	973	False	NA	7	True	AATAAA	-18	NA	55949153	55966173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_55949489_55949858_55949965_55952415_55952613_55960190_55960305_55963442_55963540_55964710_55964854_55965342
ENSMUSG00000032322.15_0	chr9	+	1763	15	FSM	ENSMUSG00000032322.15	ENSMUST00000059206.8	1863	15	85	15	71	1	multi-exon	FALSE	canonical	1	2	junction_9	2.96922995583236	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGTAAAGCGGCACATTC	NA	False	NA	NA	False	AATAAA	-12	NA	55997330	56036157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_55997729_56021513_56021615_56022346_56022422_56027584_56027620_56027830_56027938_56030042_56030106_56030545_56030645_56031031_56031078_56031877_56031958_56032407_56032507_56033210_56033308_56033865_56033957_56034768_56034822_56035010_56035145_56035872
ENSMUSG00000032323.14_1	chr9	+	2715	10	NIC	ENSMUSG00000032323.14	novel	539	4	NA	NA	-8335	-15	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	2.0245407953654	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAACACTGAGGACCGT	NA	False	NA	NA	False	AATAAA	-2	NA	57905358	57934291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_57905602_57912843_57913839_57923556_57923713_57925476_57925677_57926575_57926780_57927991_57928150_57932360_57932528_57932810_57932890_57933367_57933566_57933976
ENSMUSG00000032324.12_1	chr9	-	1660	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	55	1	55	-1	multi-exon	FALSE	canonical	3	718	junction_1	24.1522945769824	751	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATGTACATTTTAATTAT	NA	False	NA	-4	True	AATAAA	-16	NA	56068286	56043168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
ENSMUSG00000032327.15_0	chr9	+	2712	18	ISM	ENSMUSG00000032327.15	ENSMUST00000167479.8	2871	19	397	3	252	-3	3prime_fragment	TRUE	canonical	1	1	junction_1	1.92416790985837	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACACTGTCCGTAAAGCT	NA	False	NA	NA	False	NA	NA	NA	58042344	58061276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_58042486_58046262_58046330_58046638_58046725_58047696_58047837_58048141_58048166_58048338_58048506_58050197_58050321_58052743_58052812_58052995_58053076_58053280_58053343_58054744_58054908_58056462_58056539_58057360_58057495_58058443_58058562_58058645_58058748_58059161_58059326_58059727_58059884_58060435
ENSMUSG00000032328.13_0	chr9	-	3550	7	FSM	ENSMUSG00000032328.13	ENSMUST00000034878.12	3658	7	99	9	99	-9	multi-exon	FALSE	canonical	3	408	junction_2	27.5282682992511	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAATTAATCGTGCTGT	NA	False	NA	-18	True	AATAAA	-5	NA	79700613	79676233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_79678762_79681374_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
ENSMUSG00000032328.13_3	chr9	-	1694	1	ISM	ENSMUSG00000032328.13	ENSMUST00000034878.12	3658	7	22785	9	22785	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAATTAATCGTGCTGT	NA	False	NA	-18	True	AATAAA	-5	NA	79677927	79676233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_79676200_79677900
ENSMUSG00000032329.5_0	chr9	+	3509	10	NNC	ENSMUSG00000032329.5	novel	3778	10	NA	NA	0	-55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	67.6052448838289	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGTTGATGTGCTTGCC	NA	False	NA	16	True	ATTAAA	-17	NA	56326113	56404165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105_56397249_56401809
ENSMUSG00000032329.5_2	chr9	+	3502	10	FSM	ENSMUSG00000032329.5	ENSMUST00000034879.5	3778	10	221	55	0	-55	multi-exon	FALSE	canonical	3	83	junction_9	43.8482230730809	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGTTGATGTGCTTGCC	NA	False	NA	16	True	ATTAAA	-17	NA	56326113	56404165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105_56397249_56401816
ENSMUSG00000032329.5_29	chr9	+	2266	1	ISM	ENSMUSG00000032329.5	ENSMUST00000034879.5	3778	10	76007	55	75786	-55	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGTTGATGTGCTTGCC	NA	False	NA	16	True	ATTAAA	-17	NA	56401899	56404165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_56401900_56404200
ENSMUSG00000032329.5_5	chr9	+	1512	9	FSM	ENSMUSG00000032329.5	ENSMUST00000215269.2	1700	9	186	2	0	-2	multi-exon	FALSE	canonical	3	179	junction_3	23.7276210354093	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGTCTCTTCCCTGATG	NA	False	NA	NA	False	AATAAA	-16	NA	56326113	56397607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105
ENSMUSG00000032330.8_0	chr9	-	447	4	FSM	ENSMUSG00000032330.8	ENSMUST00000034881.8	659	4	165	47	-3	-2	multi-exon	FALSE	canonical	3	5621	junction_3	439.918426781855	935	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGTCTCCCTTTTCA	NA	False	NA	-16	True	AATAAA	-14	NA	79666995	79662689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_79662888_79663558_79663644_79665771_79665862_79666921
ENSMUSG00000032333.7_0	chr9	+	2116	8	NIC	ENSMUSG00000032333.7	novel	2236	8	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	150.498220207796	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAATGGAGAAGTGCAGCT	NA	False	NA	6	True	AATAAA	-17	NA	58160467	58169798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_58160561_58162216_58162324_58162816_58163097_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ENSMUSG00000032333.7_1	chr9	+	1807	7	NIC	ENSMUSG00000032333.7	novel	1984	7	NA	NA	25	-2	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	122.45498038962	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGAGAAGTGCAGCTGGC	NA	False	NA	9	True	AATAAA	-20	NA	58160499	58169801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_58160561_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ENSMUSG00000032333.7_10	chr9	+	2188	8	FSM	ENSMUSG00000032333.7	ENSMUST00000216877.2	2236	8	46	2	46	-2	multi-exon	FALSE	canonical	3	65	junction_3	134.059079269902	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGAGAAGTGCAGCTGGC	NA	False	NA	9	True	AATAAA	-20	NA	58160520	58169801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_58160683_58162216_58162324_58162816_58163097_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ENSMUSG00000032333.7_2	chr9	+	1897	7	FSM	ENSMUSG00000032333.7	ENSMUST00000034883.7	1984	7	83	4	55	-4	multi-exon	FALSE	canonical	3	127	junction_1	85.7729561108861	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATGGAGAAGTGCAGCTG	NA	False	NA	7	True	AATAAA	-18	NA	58160529	58169799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_58160683_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ENSMUSG00000032333.7_4	chr9	+	3412	6	NIC	ENSMUSG00000032333.7	novel	1984	7	NA	NA	75	-3	intron_retention	FALSE	canonical	3	282	junction_1	36.1861852092757	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGAGAAGTGCAGCTGG	NA	False	NA	8	True	AATAAA	-19	NA	58160549	58169800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ENSMUSG00000032334.11_0	chr9	-	2442	7	FSM	ENSMUSG00000032334.11	ENSMUST00000061799.10	3297	7	-9	864	-9	-864	multi-exon	FALSE	canonical	2	7	junction_6	4.22952584681651	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTGCTGTGCCCTGTGG	9348	False	NA	NA	False	AATAAA	-21	NA	58220478	58195884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_58196201_58198037_58198154_58199851_58199948_58200855_58201013_58201641_58201780_58204903_58205013_58218968
ENSMUSG00000032336.18_0	chr9	+	2016	8	FSM	ENSMUSG00000032336.18	ENSMUST00000085651.12	2024	8	1	7	1	-7	multi-exon	FALSE	canonical	3	310	junction_5	36.1815151813233	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGTGCTTGGAATAATA	538	False	NA	NA	False	AATAAA	-9	NA	58489575	58560154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141
ENSMUSG00000032336.18_1	chr9	+	1911	8	FSM	ENSMUSG00000032336.18	ENSMUST00000176896.8	841	8	-161	-909	-12	-7	multi-exon	FALSE	canonical	3	20	junction_5	128.573492046933	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGTGCTTGGAATAATA	525	False	NA	NA	False	AATAAA	-9	NA	58489562	58560154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58550968_58557779_58557802_58558540_58558616_58559141
ENSMUSG00000032336.18_25	chr9	+	760	1	ISM	ENSMUSG00000032336.18	ENSMUST00000085651.12	2024	8	69820	7	136	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGTGCTTGGAATAATA	NA	False	NA	NA	False	AATAAA	-9	NA	58559394	58560154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_58559400_58560200
ENSMUSG00000032338.10_0	chr9	+	2124	1	ISM	ENSMUSG00000032338.10	ENSMUST00000034889.10	6118	8	37632	8	37632	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAAATGCCGCCTTACT	NA	False	NA	NA	False	AATAAA	-8	NA	58768326	58770450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_58768300_58770400
ENSMUSG00000032340.9_0	chr9	-	5411	28	FSM	ENSMUSG00000032340.9	ENSMUST00000214547.2	5414	28	7	-4	7	4	multi-exon	FALSE	canonical	3	72	junction_21	17.5900582969936	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTGAAAAGACTTGTTT	NA	False	NA	-12	True	AATGAA	-5	NA	58943701	58783833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264_58796504_58801157_58801306_58806447_58806517_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814330_58815686_58815783_58820430_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838459_58863241_58863363_58865180_58865336_58885907_58886045_58889358_58889513_58892883_58893160_58897473_58897792_58943248
ENSMUSG00000032340.9_17	chr9	-	5479	28	NIC	ENSMUSG00000032340.9	novel	7379	29	NA	NA	-4	11	combination_of_known_junctions	FALSE	canonical	2	5	junction_12	30.3143114055806	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGACTTGTTTGTTGCTT	NA	False	NA	-5	True	AATGAA	-12	NA	58943714	58783826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264_58796504_58801157_58801306_58806447_58806517_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814378_58815686_58815783_58820430_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838459_58863241_58863363_58865180_58865336_58885907_58886045_58889358_58889513_58892883_58893160_58897473_58897792_58943248
ENSMUSG00000032340.9_2	chr9	-	1703	1	ISM	ENSMUSG00000032340.9	ENSMUST00000068664.7	7379	29	159898	154	17391	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAAACTGGTCTGGTCAA	NA	False	NA	-7	True	AATACA	-13	NA	58783826	58782123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_58782100_58783800
ENSMUSG00000032340.9_4	chr9	-	5348	28	NIC	ENSMUSG00000032340.9	novel	5414	28	NA	NA	10	4	combination_of_known_junctions	FALSE	canonical	3	63	junction_21	18.8438096795025	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTGAAAAGACTTGTTT	NA	False	NA	-12	True	AATGAA	-5	NA	58943698	58783833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264_58796504_58801157_58801306_58806447_58806517_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814330_58815686_58815783_58820430_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838399_58863241_58863363_58865180_58865336_58885907_58886045_58889358_58889513_58892883_58893160_58897473_58897792_58943248
ENSMUSG00000032342.14_1	chr9	+	2347	12	FSM	ENSMUSG00000032342.14	ENSMUST00000034896.13	2366	12	11	8	6	-8	multi-exon	FALSE	canonical	3	57	junction_9	10.2457409010559	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATACTGTTGTTAGGTG	NA	False	NA	11	True	AATAAA	-10	NA	78355500	78381426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_78355793_78356700_78356901_78356999_78357118_78360045_78360336_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368974_78372165_78372285_78377912_78378074_78381071
ENSMUSG00000032342.14_11	chr9	+	2248	12	NNC	ENSMUSG00000032342.14	novel	2366	12	NA	NA	3	-13	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	20.7332527258759	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAAAATACTGTTGTT	NA	False	NA	6	True	AATAAA	-5	NA	78355497	78381421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_78355793_78356700_78356901_78356999_78357118_78360045_78360336_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368877_78372165_78372285_78377912_78378074_78381071
ENSMUSG00000032344.18_1	chr9	-	4081	5	FSM	ENSMUSG00000032344.18	ENSMUST00000070742.14	4049	5	-32	0	1	0	multi-exon	FALSE	canonical	1	6	junction_4	3.56195171219375	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGTAGTTGAATGTATC	5241	False	NA	-8	True	AATAAA	-16	NA	78350518	78337807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_78340550_78341594_78341698_78342722_78342966_78344584_78344805_78349745
ENSMUSG00000032344.18_2	chr9	-	5132	4	NIC	ENSMUSG00000032344.18	novel	2511	5	NA	NA	8	2	intron_retention	FALSE	canonical	0	0	junction_2	4.49691252107735	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAGTTGAATGTATCAG	5281	False	NA	-6	True	AATAAA	-18	NA	78350478	78337805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_78341698_78342722_78343010_78344584_78344805_78349745
ENSMUSG00000032344.18_4	chr9	-	4024	6	NNC	ENSMUSG00000032344.18	novel	4049	5	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5.03587132480567	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAGTTGAATGTATCAG	5270	False	NA	-6	True	AATAAA	-18	NA	78350489	78337805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_78339884_78339913_78340550_78341594_78341698_78342722_78342966_78344584_78344805_78349745
ENSMUSG00000032344.18_8	chr9	-	1146	1	ISM	ENSMUSG00000032344.18	ENSMUST00000070742.14	4049	5	11533	0	11214	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGTAGTTGAATGTATC	8223	False	NA	-8	True	AATAAA	-16	NA	78338953	78337807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_78337800_78339000
ENSMUSG00000032346.8_0	chr9	-	635	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	163	1340	163	-1340	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGTTGGTTTGATCACA	NA	False	NA	-10	True	TATAAA	-15	NA	78285844	78284730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_78284974_78285256_78285440_78285635
ENSMUSG00000032346.8_2	chr9	-	425	2	ISM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	569	1340	569	-1340	3prime_fragment	FALSE	canonical	3	2104	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGTTGGTTTGATCACA	NA	False	NA	-10	True	TATAAA	-15	NA	78285438	78284730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_78284974_78285256
ENSMUSG00000032348.7_1	chr9	+	902	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	68	7	68	-7	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	1155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTATTCTCGTTGGAGA	NA	False	NA	10	True	ATTAAA	-9	NA	78099296	78116624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
ENSMUSG00000032348.7_17	chr9	+	854	6	ISM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	6321	7	6321	-7	3prime_fragment	FALSE	canonical	3	2950	junction_4	256.764795094655	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTATTCTCGTTGGAGA	NA	False	NA	10	True	ATTAAA	-9	NA	78105549	78116624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
ENSMUSG00000032349.14_0	chr9	+	2736	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	40	6	-30	-6	multi-exon	FALSE	canonical	3	515	junction_6	44.3764048354804	1024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCGTGCTGTGTCTTCTGT	NA	False	NA	5	True	ATTAAA	-13	NA	77824685	77891795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
ENSMUSG00000032349.14_27	chr9	+	1396	1	ISM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	65754	6	41827	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCGTGCTGTGTCTTCTGT	NA	False	NA	5	True	ATTAAA	-13	NA	77890399	77891795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_77890400_77891800
ENSMUSG00000032350.10_0	chr9	+	3361	16	FSM	ENSMUSG00000032350.10	ENSMUST00000034905.9	3423	16	39	23	39	-23	multi-exon	FALSE	canonical	3	228	junction_1	20.3437131976114	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATGGGATTCCTATTC	4459	False	NA	-5	True	AATAAA	-22	NA	77661855	77701744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_77662242_77682360_77682474_77683407_77683591_77686803_77686918_77688365_77688425_77688515_77688650_77692615_77692691_77693031_77693149_77693992_77694132_77694558_77694672_77695088_77695182_77695469_77695575_77698996_77699079_77699161_77699266_77699334_77699456_77700321
ENSMUSG00000032352.17_1	chr9	-	3084	14	FSM	ENSMUSG00000032352.17	ENSMUST00000183873.8	3121	14	14	23	-6	-23	multi-exon	TRUE	canonical	3	32	junction_5	6.66972316521396	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACTCATCATGGACA	NA	False	NA	NA	False	NA	NA	NA	77452138	77338127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_77339563_77341275_77341413_77342328_77342502_77349458_77349575_77358639_77358724_77359884_77360004_77362439_77362585_77364671_77364747_77365112_77365177_77365352_77365410_77375839_77375930_77379433_77379513_77406515_77406634_77451746
ENSMUSG00000032353.10_0	chr9	-	1262	3	FSM	ENSMUSG00000032353.10	ENSMUST00000058488.9	1346	3	85	-1	85	1	multi-exon	FALSE	canonical	3	96	junction_1	7.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGGAGTGATGTGTGCC	NA	False	NA	-11	True	AATAAA	-15	NA	89587036	89581257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_89582033_89584824_89585074_89586798
ENSMUSG00000032353.10_1	chr9	-	428	1	ISM	ENSMUSG00000032353.10	ENSMUST00000058488.9	1346	3	5435	0	5190	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGGAGTGATGTGTGC	NA	False	NA	-12	True	AATAAA	-14	NA	89581686	89581258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_89581300_89581700
ENSMUSG00000032358.13_0	chr9	-	6443	5	FSM	ENSMUSG00000032358.13	ENSMUST00000183437.8	3879	5	23	-2587	23	2587	multi-exon	FALSE	canonical	1	2	junction_4	1.87082869338697	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATACTATATTGTTGAG	NA	False	NA	NA	False	ATTAAA	-10	NA	76474375	76394748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_76400368_76409390_76409516_76410299_76410465_76452621_76453126_76474345
ENSMUSG00000032359.15_0	chr9	+	1339	12	FSM	ENSMUSG00000032359.15	ENSMUST00000034915.15	1617	12	269	9	-1	-7	multi-exon	FALSE	canonical	2	5	junction_2	3.46648653907957	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACCTCCCTGGGCGTAG	NA	False	NA	-3	True	AATAAA	-9	NA	89936588	89958133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_89936688_89942531_89942564_89943571_89943678_89944769_89944841_89946205_89946311_89946559_89946647_89947444_89947501_89949079_89949162_89950457_89950527_89953871_89953979_89956920_89957047_89957734
ENSMUSG00000032360.17_0	chr9	-	3759	8	FSM	ENSMUSG00000032360.17	ENSMUST00000063140.15	3761	8	-8	10	-8	-10	multi-exon	FALSE	canonical	0	0	junction_1	1.0690449676497	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAAAACAGAGGTATAA	NA	False	NA	NA	False	NA	NA	NA	76230901	76133171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_76135488_76137785_76138009_76140181_76140304_76143450_76143672_76153628_76153745_76161742_76161987_76166933_76167113_76230563
ENSMUSG00000032363.16_11	chr9	+	3785	16	ISM	ENSMUSG00000032363.16	ENSMUST00000113060.3	5098	24	22516	11	-2912	-6	3prime_fragment	FALSE	canonical	3	9	junction_10	8.54946392081593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTTTCAGAGTGGTTTGG	25	False	NA	-4	True	CATAAA	-10	NA	90067794	90082144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90075077_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
ENSMUSG00000032363.16_18	chr9	+	2270	6	ISM	ENSMUSG00000032363.16	ENSMUST00000113060.3	5098	24	29796	4	2038	1	3prime_fragment	FALSE	canonical	3	18	junction_1	7.67854152818099	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGTGGTTTGGCCTTGTC	988	False	NA	3	True	CATAAA	-17	NA	90075074	90082151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
ENSMUSG00000032363.16_2	chr9	+	5082	25	FSM	ENSMUSG00000032363.16	ENSMUST00000147250.8	4833	25	-140	-109	-7	-1	multi-exon	FALSE	canonical	2	9	junction_18	7.86065713255295	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTGGTTTGGCCTTGTCT	NA	False	NA	4	True	CATAAA	-18	NA	90045114	90082152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_90045368_90053526_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90075077_90075919_90076095_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
ENSMUSG00000032363.16_24	chr9	+	5031	23	ISM	ENSMUSG00000032363.16	ENSMUST00000113059.8	5379	24	8503	4	8346	-1	3prime_fragment	FALSE	canonical	3	12	junction_17	7.25224388188332	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGAGTGGTTTGGCCTTG	NA	False	NA	1	True	CATAAA	-15	NA	90053624	90082149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90074951_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
ENSMUSG00000032363.16_4	chr9	+	5377	24	FSM	ENSMUSG00000032363.16	ENSMUST00000113060.3	5098	24	-283	4	-126	1	multi-exon	FALSE	canonical	2	9	junction_18	7.51406997818433	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGTGGTTTGGCCTTGTC	NA	False	NA	3	True	CATAAA	-17	NA	90044995	90082151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_90045368_90053526_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90075077_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
ENSMUSG00000032363.16_7	chr9	+	5264	24	FSM	ENSMUSG00000032363.16	ENSMUST00000113059.8	5379	24	113	2	-20	1	multi-exon	FALSE	canonical	2	12	junction_18	7.29502510649195	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGTGGTTTGGCCTTGTC	NA	False	NA	3	True	CATAAA	-17	NA	90045234	90082151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_90045368_90053526_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90074951_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
ENSMUSG00000032366.16_0	chr9	-	1452	1	NIC	ENSMUSG00000032366.16	novel	1714	8	NA	NA	8781	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTGGTCCTGTCGT	NA	False	NA	-3	True	AATAAA	-23	NA	66931326	66929874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_66929900_66931300
ENSMUSG00000032366.16_1	chr9	-	1652	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113696.8	1714	8	59	3	-7	0	multi-exon	FALSE	canonical	3	370	junction_1	100.853500541273	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTGGTCCTGTCGT	NA	False	NA	-3	True	AATAAA	-23	NA	66951130	66929874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_17	chr9	-	2558	8	NIC	ENSMUSG00000032366.16	novel	887	9	NA	NA	5	-10	intron_retention	FALSE	canonical	3	256	junction_1	130.784134343269	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCCTGTTTGCTATTCTT	NA	False	NA	-18	True	AATAAA	-11	NA	66951118	66935257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_18	chr9	-	2529	8	NIC	ENSMUSG00000032366.16	novel	1797	9	NA	NA	-5	-10	intron_retention	FALSE	canonical	3	209	junction_4	194.584329339466	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCCTGTTTGCTATTCTT	NA	False	NA	-18	True	AATAAA	-11	NA	66951089	66935257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_19	chr9	-	1097	9	NIC	ENSMUSG00000032366.16	novel	1208	10	NA	NA	-30	-10	combination_of_known_junctions	FALSE	canonical	3	173	junction_1	203.579683416592	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCCTGTTTGCTATTCTT	NA	False	NA	-18	True	AATAAA	-11	NA	66951153	66935257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_2	chr9	-	1600	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	6	1	6	0	multi-exon	FALSE	canonical	3	209	junction_4	182.146722648058	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTGGTCCTGTCGT	NA	False	NA	-3	True	AATAAA	-23	NA	66951078	66929874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_25	chr9	-	1057	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113684.8	887	9	-97	-73	11	-9	multi-exon	FALSE	canonical	3	173	junction_1	167.222110903433	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTGTTTGCTATTCTTT	NA	False	NA	-17	True	AATAAA	-12	NA	66951112	66935256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032369.14_0	chr9	+	1484	9	FSM	ENSMUSG00000032369.14	ENSMUST00000093801.10	2302	9	513	305	-79	-2	multi-exon	FALSE	canonical	1	104	junction_4	78.1135991681346	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAAAAGAGTTGATGTTA	NA	False	NA	NA	False	NA	NA	NA	92132315	92154026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_92132414_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
ENSMUSG00000032370.9_4	chr9	-	1971	6	FSM	ENSMUSG00000032370.9	ENSMUST00000034929.7	2031	6	60	0	-4	0	multi-exon	FALSE	canonical	3	42	junction_2	9.68710483064987	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGGCACTTTTCAGT	NA	False	NA	NA	False	AATAAA	-11	NA	66882706	66862674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_66863483_66874960_66875127_66877863_66878219_66878457_66878649_66881999_66882067_66882322
ENSMUSG00000032370.9_5	chr9	-	2458	4	ISM	ENSMUSG00000032370.9	ENSMUST00000215172.2	1806	5	-24	13753	-24	-13748	5prime_fragment	FALSE	canonical	3	65	junction_1	1.88561808316413	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAGTTTCTACCCA	NA	False	NA	NA	False	AATACA	-19	NA	66882726	66876422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_66878219_66878457_66878649_66881999_66882067_66882322
ENSMUSG00000032373.16_0	chr9	+	3637	10	FSM	ENSMUSG00000032373.16	ENSMUST00000085420.12	3639	10	-1	3	0	-3	multi-exon	FALSE	canonical	2	4	junction_7	4.2687494916219	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGACTGATTTTTTCC	NA	False	NA	NA	False	AATAAA	-11	NA	66621010	66674121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_66621216_66624841_66624863_66653751_66653932_66654857_66655004_66658211_66658308_66659224_66659289_66659568_66659727_66660976_66661104_66670528_66670617_66671569
ENSMUSG00000032374.15_0	chr9	+	3595	19	FSM	ENSMUSG00000032374.15	ENSMUST00000070522.14	3649	19	41	13	0	-5	multi-exon	FALSE	canonical	3	58	junction_10	9.44264688775947	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAAAATAAACATTGTG	NA	False	NA	NA	False	NA	NA	NA	92424316	92490468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475797_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
ENSMUSG00000032374.15_3	chr9	+	3659	20	FSM	ENSMUSG00000032374.15	ENSMUST00000160359.2	3663	20	-1	5	-1	-5	multi-exon	TRUE	canonical	2	5	junction_13	23.4907891420283	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAAAATAAACATTGTG	NA	False	NA	NA	False	NA	NA	NA	92424315	92490468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475797_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92484037_92484101_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
ENSMUSG00000032375.16_0	chr9	-	3122	1	ISM	ENSMUSG00000032375.16	ENSMUST00000034934.15	4910	6	17142	25	17028	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAAGTGGAGTGTA	NA	False	NA	NA	False	TTTAAA	-14	NA	66685630	66682508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_66682500_66685600
ENSMUSG00000032375.16_2	chr9	-	2602	6	FSM	ENSMUSG00000032375.16	ENSMUST00000034934.15	4910	6	-6	2314	-6	1677	multi-exon	FALSE	canonical	1	1	junction_5	4.70744091837593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCATGGAGAACCTGAGAA	NA	False	NA	NA	False	GATAAA	-16	NA	66702778	66684797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_66686663_66691799_66691928_66696927_66697051_66697879_66697951_66701351_66701523_66702534
ENSMUSG00000032376.13_1	chr9	-	2245	15	FSM	ENSMUSG00000032376.13	ENSMUST00000127569.8	5607	15	138	3224	2	16	multi-exon	FALSE	canonical	3	110	junction_11	15.624418356521	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATTTCTTGTCTCTGGTC	NA	False	NA	-3	True	NA	NA	NA	66500286	66425142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
ENSMUSG00000032376.13_2	chr9	-	2170	1	ISM	ENSMUSG00000032376.13	ENSMUST00000127569.8	5607	15	75323	1013	2520	584	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGCCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66425101	66422931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_66422900_66425100
ENSMUSG00000032376.13_3	chr9	-	2981	7	ISM	ENSMUSG00000032376.13	ENSMUST00000139547.8	3662	13	62611	-1	13	1	3prime_fragment	FALSE	canonical	3	117	junction_5	15.8534959341255	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCTGGTTGAGTGTCGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	66437671	66423514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525
ENSMUSG00000032376.13_5	chr9	-	2126	14	FSM	ENSMUSG00000032376.13	ENSMUST00000098613.9	2797	14	37	634	1	16	multi-exon	FALSE	canonical	3	10	junction_8	36.8152271043594	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATTTCTTGTCTCTGGTC	NA	False	NA	-3	True	NA	NA	NA	66500281	66425142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
ENSMUSG00000032380.10_0	chr9	+	1764	12	FSM	ENSMUSG00000032380.10	ENSMUST00000034944.9	1772	12	2	6	-1	-6	multi-exon	TRUE	canonical	0	0	junction_2	2.90340353139478	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTAATGCTTGGGTGTTTT	4136	False	NA	NA	False	ATTAAA	-11	NA	66065506	66179518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_66065623_66072619_66072718_66127815_66128038_66138994_66139134_66153698_66153829_66157618_66157668_66158356_66158384_66161752_66161906_66162612_66162659_66175960_66176051_66176148_66176233_66178908
ENSMUSG00000032381.6_0	chr9	+	1089	5	FSM	ENSMUSG00000032381.6	ENSMUST00000034945.6	1240	5	151	0	151	0	multi-exon	FALSE	canonical	3	677	junction_3	21.6376408140999	407	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTCACCTTAGGTTTT	1534	False	NA	17	True	AATAAA	-18	NA	66034043	66046237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_66034253_66039808_66039974_66040713_66040764_66043583_66043630_66045618
ENSMUSG00000032382.15_1	chr9	-	1951	15	FSM	ENSMUSG00000032382.15	ENSMUST00000034946.15	2073	15	110	12	21	-12	multi-exon	FALSE	canonical	2	266	junction_13	37.3054135153468	478	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCATGTCACAGGACTG	NA	False	NA	-16	True	AATAAA	-8	NA	66032058	65995426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66031888
ENSMUSG00000032383.8_1	chr9	+	886	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	3	3	3	-3	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	825	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGCTTGGGTGTGGGCTG	1577	False	NA	13	True	AATAAA	-13	NA	65967515	65973902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
ENSMUSG00000032384.17_0	chr9	+	7258	15	NIC	ENSMUSG00000032384.17	novel	7208	14	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	5.25327885948483	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTACTTTTACTTCCT	NA	False	NA	13	True	AATAAA	-14	NA	65816268	65952283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_65816451_65828285_65828351_65857297_65857347_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
ENSMUSG00000032384.17_1	chr9	+	7218	14	NIC	ENSMUSG00000032384.17	novel	7208	14	NA	NA	-1	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	7.4269619168008	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTACTTCCTTGTTTCA	NA	False	NA	20	True	AATAAA	-21	NA	65816266	65952290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_65816451_65828285_65828351_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
ENSMUSG00000032384.17_17	chr9	+	6119	8	ISM	ENSMUSG00000032384.17	ENSMUST00000034949.10	7208	14	93254	8	-5500	-2	3prime_fragment	FALSE	canonical	3	16	junction_6	5.31459292506808	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTTACTTCCTTGTTTC	426	False	NA	19	True	AATAAA	-20	NA	65909521	65952289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
ENSMUSG00000032384.17_2	chr9	+	7199	14	FSM	ENSMUSG00000032384.17	ENSMUST00000034949.10	7208	14	1	8	1	-2	multi-exon	FALSE	canonical	3	5	junction_1	6.58040843321514	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTTACTTCCTTGTTTC	NA	False	NA	19	True	AATAAA	-20	NA	65816268	65952289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65816451_65857297_65857347_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
ENSMUSG00000032384.17_21	chr9	+	5541	2	ISM	ENSMUSG00000032384.17	ENSMUST00000034949.10	7208	14	123250	8	-3782	-2	3prime_fragment	FALSE	canonical	3	21	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTTACTTCCTTGTTTC	NA	False	NA	19	True	AATAAA	-20	NA	65939517	65952289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_65939628_65946858
ENSMUSG00000032384.17_22	chr9	+	3374	1	NIC	ENSMUSG00000032384.17	novel	2073	13	NA	NA	5617	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTACTTCCTTGTTTCA	NA	False	NA	20	True	AATAAA	-21	NA	65948916	65952290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_65948900_65952300
ENSMUSG00000032384.17_4	chr9	+	7144	13	FSM	ENSMUSG00000032384.17	ENSMUST00000206594.2	2482	13	-101	-4561	1	-4	multi-exon	FALSE	canonical	2	3	junction_1	7.24377127070024	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTACTTTTACTTCCT	NA	False	NA	13	True	AATAAA	-14	NA	65816268	65952283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65816451_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
ENSMUSG00000032386.16_2	chr9	-	3375	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	12	-1388	11	-9	multi-exon	TRUE	canonical	3	144	junction_4	28.3474229673332	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGAAAAGAAGGGGTTGG	NA	False	NA	-20	True	AATAAA	-19	NA	65792326	65739049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
ENSMUSG00000032386.16_4	chr9	-	3277	12	FSM	ENSMUSG00000032386.16	ENSMUST00000122410.8	3915	12	6	632	6	-9	multi-exon	FALSE	canonical	3	24	junction_1	56.3782972135042	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGAAAAGAAGGGGTTGG	NA	False	NA	-20	True	AATAAA	-19	NA	65792331	65739049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_65740731_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
ENSMUSG00000032386.16_5	chr9	-	1556	1	ISM	ENSMUSG00000032386.16	ENSMUST00000179395.8	7055	15	75476	2833	19895	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGGGGTTGGAAGTT	NA	False	NA	-15	True	AATAAA	-24	NA	65740600	65739044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_65739000_65740600
ENSMUSG00000032387.16_12	chr9	+	1971	8	FSM	ENSMUSG00000032387.16	ENSMUST00000055844.10	1987	8	14	2	14	-2	multi-exon	FALSE	canonical	3	1453	junction_4	112.168059042616	1639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCTCTGATTTTTGCT	NA	False	NA	12	True	AATAAA	-12	NA	65537854	65567806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
ENSMUSG00000032387.16_4	chr9	+	1910	9	NIC	ENSMUSG00000032387.16	novel	1803	9	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	108	junction_1	514.959813359256	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCTCTGATTTTTGCT	NA	False	NA	12	True	AATAAA	-12	NA	65536932	65567806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_65537005_65537987_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
ENSMUSG00000032388.8_0	chr9	+	1655	9	FSM	ENSMUSG00000032388.8	ENSMUST00000034955.8	2680	9	10	1015	4	-1015	multi-exon	FALSE	canonical	3	680	junction_7	65.1440711039769	607	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGTGGCTTCTGTGATG	7186	False	NA	10	True	AATAAA	-12	NA	65368238	65394737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723_65391865_65394114
ENSMUSG00000032392.12_0	chr9	+	2494	7	FSM	ENSMUSG00000032392.12	ENSMUST00000069000.9	2482	7	-16	4	-16	-4	multi-exon	FALSE	canonical	3	27	junction_1	17.0269394392142	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATACCAAGTTGTCTGTG	NA	False	NA	NA	False	AATAAA	-11	NA	65121955	65146496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65122146_65122630_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
ENSMUSG00000032392.12_3	chr9	+	2336	7	NNC	ENSMUSG00000032392.12	novel	2518	6	NA	NA	-69	-4	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	22.6255754991264	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATACCAAGTTGTCTGTG	NA	False	NA	NA	False	AATAAA	-11	NA	65122357	65146496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_65122390_65122630_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
ENSMUSG00000032392.12_5	chr9	+	2538	6	FSM	ENSMUSG00000032392.12	ENSMUST00000213396.2	2518	6	-29	9	-29	-3	multi-exon	FALSE	canonical	3	51	junction_2	11.7915223783869	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACCAAGTTGTCTGTGA	NA	False	NA	NA	False	AATAAA	-12	NA	65122397	65146497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
ENSMUSG00000032393.16_2	chr9	+	4766	21	FSM	ENSMUSG00000032393.16	ENSMUST00000034960.14	4808	21	26	16	26	-16	multi-exon	FALSE	canonical	3	89	junction_17	12.9379287368574	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTCCTTCCCCTACAAA	NA	False	NA	15	True	ATTAAA	-12	NA	64939721	64989917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_64939906_64942156_64942294_64944250_64944524_64949545_64949659_64950967_64951142_64952901_64953071_64958671_64958783_64960326_64960456_64961050_64961113_64961700_64961802_64962109_64962288_64963073_64963234_64967484_64967565_64970708_64970862_64971100_64971237_64973632_64973779_64981720_64981868_64983017_64983171_64985244_64985388_64985955_64986068_64988012
ENSMUSG00000032393.16_3	chr9	+	7013	20	NIC	ENSMUSG00000032393.16	novel	4808	21	NA	NA	29	-17	intron_retention	FALSE	canonical	3	89	junction_16	12.8524548459766	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTTCCTTCCCCTACAA	NA	False	NA	14	True	ATTAAA	-11	NA	64939724	64989916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_64942294_64944250_64944524_64949545_64949659_64950967_64951142_64952901_64953071_64958671_64958783_64960326_64960456_64961050_64961113_64961700_64961802_64962109_64962288_64963073_64963234_64967484_64967565_64970708_64970862_64971100_64971237_64973632_64973779_64981720_64981868_64983017_64983171_64985244_64985388_64985955_64986068_64988012
ENSMUSG00000032394.7_0	chr9	+	4301	14	FSM	ENSMUSG00000032394.7	ENSMUST00000034961.6	3146	14	-4	-1151	-4	1151	multi-exon	FALSE	canonical	3	39	junction_11	21.5941587543412	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAACAGTGAGGTTTT	NA	False	NA	24	True	AATAAA	-13	NA	65048466	65094305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65048836_65051537_65051844_65084676_65084822_65085147_65085279_65085657_65085796_65087322_65087482_65088417_65088584_65088806_65089055_65089237_65089403_65089983_65090176_65090281_65090387_65091114_65091194_65091314_65091523_65092415
ENSMUSG00000032394.7_1	chr9	+	4369	14	FSM	ENSMUSG00000032394.7	ENSMUST00000217371.2	3183	14	-35	-1151	-12	1151	multi-exon	FALSE	canonical	3	70	junction_11	14.1668000921899	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAACAGTGAGGTTTT	NA	False	NA	24	True	AATAAA	-13	NA	65048458	65094305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65048836_65051537_65051844_65084676_65084822_65085147_65085279_65085657_65085796_65087322_65087482_65088417_65088584_65088806_65089055_65089237_65089403_65089983_65090176_65090281_65090387_65091054_65091194_65091314_65091523_65092415
ENSMUSG00000032396.18_0	chr9	-	3225	17	FSM	ENSMUSG00000032396.18	ENSMUST00000168844.9	3575	17	95	255	-6	0	multi-exon	FALSE	canonical	3	33	junction_16	6.60699203495812	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGTGTACTTTTTTTTC	5182	False	NA	-3	True	ATTAAA	-13	NA	64248444	64214292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_64214631_64214711_64214887_64215561_64215708_64217448_64217628_64217723_64217879_64218727_64219262_64221215_64221309_64221834_64222083_64224969_64225132_64226364_64226535_64229683_64229864_64231903_64231983_64232989_64233167_64236714_64236851_64238068_64238198_64246760_64246915_64248274
ENSMUSG00000032397.8_0	chr9	+	1199	8	NIC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	3	-4	combination_of_known_junctions	FALSE	canonical	3	673	junction_1	630.170951862611	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACTCTCAGGATTTGA	9572	False	NA	10	True	AATAAA	-10	NA	64188891	64212070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_1	chr9	+	1193	8	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	3	-4	combination_of_known_junctions	FALSE	canonical	3	479	junction_1	696.204344855674	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACTCTCAGGATTTGA	9572	False	NA	10	True	AATAAA	-10	NA	64188891	64212070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_2	chr9	+	1195	8	FSM	ENSMUSG00000032397.8	ENSMUST00000216594.2	1841	8	10	636	6	-4	multi-exon	FALSE	canonical	3	410	junction_1	719.77354715471	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACTCTCAGGATTTGA	9575	False	NA	10	True	AATAAA	-10	NA	64188894	64212070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_64188935_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_3	chr9	+	1199	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	8	4	8	-4	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACTCTCAGGATTTGA	9577	False	NA	10	True	AATAAA	-10	NA	64188896	64212070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_46	chr9	+	1157	7	ISM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	6505	4	6505	-4	3prime_fragment	FALSE	canonical	3	2228	junction_5	165.980671565497	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACTCTCAGGATTTGA	NA	False	NA	10	True	AATAAA	-10	NA	64195393	64212070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032398.8_0	chr9	+	708	3	FSM	ENSMUSG00000032398.8	ENSMUST00000034965.8	1228	3	38	482	38	-482	multi-exon	FALSE	canonical	3	413	junction_2	26	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAAATTTTGTTTT	1666	False	NA	-4	True	ATTAAA	-12	NA	64086593	64089932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_64086703_64087780_64087871_64089423
ENSMUSG00000032398.8_2	chr9	+	307	1	ISM	ENSMUSG00000032398.8	ENSMUST00000034965.8	1228	3	3070	482	3070	-482	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAAATTTTGTTTT	4698	False	NA	-4	True	ATTAAA	-12	NA	64089625	64089932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_64089600_64089900
ENSMUSG00000032399.9_1	chr9	+	1386	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	152	0	-152	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	13550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACCCTTGTGTGACTCT	NA	False	NA	33	True	AATAAA	-15	NA	64080656	64085796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
ENSMUSG00000032399.9_17	chr9	+	1320	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1448	160	1430	-160	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGGTGACAAACCCTTGT	NA	False	NA	25	True	AATAAA	-7	NA	64082104	64085788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
ENSMUSG00000032400.19_1	chr9	-	2755	19	FSM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	198	4	0	-4	multi-exon	FALSE	canonical	3	273	junction_16	368.954800838434	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTGTTGCCTGGTTTAA	NA	False	NA	-4	True	ACTAAA	-16	NA	64080188	64044429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
ENSMUSG00000032400.19_5	chr9	-	3548	18	NIC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	0	-4	intron_retention	FALSE	canonical	3	273	junction_15	367.010696316977	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTGTTGCCTGGTTTAA	NA	False	NA	-4	True	ACTAAA	-16	NA	64080188	64044429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
ENSMUSG00000032400.19_6	chr9	-	3025	10	ISM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	16664	6	-690	-6	intron_retention	FALSE	canonical	3	728	junction_4	159.423111232537	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAATTGTTGCCTGGTTT	NA	False	NA	-6	True	ACTAAA	-14	NA	64063722	64044431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445
ENSMUSG00000032402.13_0	chr9	-	1923	1	ISM	ENSMUSG00000032402.13	ENSMUST00000034973.10	5090	9	109304	1	17857	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCCCTGCTGCTGTCTCT	NA	False	NA	-3	True	AATAAA	-39	NA	63555972	63554049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_63554000_63556000
ENSMUSG00000032402.13_1	chr9	-	5242	9	FSM	ENSMUSG00000032402.13	ENSMUST00000034973.10	5090	9	-158	6	-158	-6	multi-exon	FALSE	canonical	3	17	junction_3	5.14174095030078	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGATTCCCTGCTGCTG	2125	False	NA	-8	True	AATAAA	-34	NA	63665434	63554054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_63557668_63559762_63559908_63561967_63562106_63562832_63563046_63570946_63570998_63573429_63573505_63574756_63574889_63575010_63575205_63664753
ENSMUSG00000032403.9_0	chr9	-	594	2	FSM	ENSMUSG00000032403.9	ENSMUST00000168665.3	595	2	0	1	0	0	multi-exon	FALSE	canonical	3	56	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTTTCTAGAGTGTG	NA	False	NA	-12	True	AATAAA	-14	NA	63306523	63301729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_63301958_63306157
ENSMUSG00000032405.11_0	chr9	-	3854	14	FSM	ENSMUSG00000032405.11	ENSMUST00000098651.6	5564	14	-3	1713	1	-1594	multi-exon	FALSE	canonical	3	79	junction_1	15.6049605221996	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTAAAACCAGAAATAGTT	NA	False	NA	-12	True	AATAAA	-18	NA	62888164	62787362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_62789544_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
ENSMUSG00000032405.11_1	chr9	-	2864	14	NIC	ENSMUSG00000032405.11	novel	5564	14	NA	NA	-1	-1584	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8180976391468	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATAGTTATGTTTTTAA	NA	False	NA	-2	True	AATAAA	-28	NA	62888162	62787352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_62788546_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
ENSMUSG00000032405.11_2	chr9	-	2545	1	ISM	ENSMUSG00000032405.11	ENSMUST00000098651.6	5564	14	99963	4	6471	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAATCTGTGTTCTGTAA	8722	False	NA	-4	True	AATAAA	-13	NA	62788198	62785653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_62785700_62788200
ENSMUSG00000032407.15_0	chr9	-	2416	1	ISM	ENSMUSG00000032407.15	ENSMUST00000079659.12	7630	28	52581	0	22931	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACTTGGTGTGCTCTGTG	NA	False	NA	-3	True	ATTAAA	-17	NA	95341366	95338950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_95339000_95341400
ENSMUSG00000032407.15_14	chr9	-	3402	27	FSM	ENSMUSG00000032407.15	ENSMUST00000078374.13	3520	27	112	6	1	-6	multi-exon	TRUE	canonical	0	0	junction_13	216.387107234962	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTATAATGTTGTTTTT	8303	False	NA	-7	True	AATAAA	-11	NA	95393937	95343036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373317_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
ENSMUSG00000032407.15_16	chr9	-	3399	27	NIC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	203.484137904403	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTATAATGTTGTTTTT	8303	False	NA	-7	True	AATAAA	-11	NA	95393937	95343036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
ENSMUSG00000032407.15_2	chr9	-	3531	28	FSM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	1	-421	1	-6	multi-exon	FALSE	canonical	0	0	junction_13	167.860448931548	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTATAATGTTGTTTTT	8303	False	NA	-7	True	AATAAA	-11	NA	95393937	95343036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
ENSMUSG00000032407.15_5	chr9	-	3534	28	FSM	ENSMUSG00000032407.15	ENSMUST00000079659.12	7630	28	10	4086	1	-6	multi-exon	FALSE	canonical	0	0	junction_13	184.18480907976	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTATAATGTTGTTTTT	8303	False	NA	-7	True	AATAAA	-11	NA	95393937	95343036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373317_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
ENSMUSG00000032409.16_0	chr9	+	7984	47	FSM	ENSMUSG00000032409.16	ENSMUST00000034980.9	8056	47	66	6	-6	-6	multi-exon	TRUE	canonical	3	80	junction_14	23.1390654868948	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATATATTAGTAATCT	NA	False	NA	3	True	AATAAA	-9	NA	95739715	95833691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_95739837_95743421_95743514_95744835_95744986_95747020_95747899_95748635_95748815_95749546_95749739_95751934_95752126_95752672_95752826_95753056_95753250_95753486_95753741_95756130_95756322_95756403_95756505_95756755_95756928_95757646_95757818_95760507_95760703_95763278_95763465_95765168_95765262_95767394_95767526_95770152_95770297_95772815_95772910_95775467_95775594_95779588_95779796_95781089_95781204_95785715_95785832_95787790_95787912_95789348_95789487_95790302_95790496_95792531_95792711_95796989_95797155_95798482_95798575_95802397_95802490_95802719_95802898_95803705_95803886_95804800_95804961_95809221_95809402_95814382_95814526_95817531_95817630_95818347_95818581_95819566_95819702_95821202_95821404_95822922_95823067_95824638_95824790_95827140_95827298_95827396_95827551_95829142_95829295_95832597_95832704_95833503
ENSMUSG00000032409.16_22	chr9	+	7439	44	ISM	ENSMUSG00000032409.16	ENSMUST00000034980.9	8056	47	7553	6	7444	-6	3prime_fragment	FALSE	canonical	3	80	junction_11	23.8466345518262	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATATATTAGTAATCT	NA	False	NA	3	True	AATAAA	-9	NA	95747202	95833691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_95747899_95748635_95748815_95749546_95749739_95751934_95752126_95752672_95752826_95753056_95753250_95753486_95753741_95756130_95756322_95756403_95756505_95756755_95756928_95757646_95757818_95760507_95760703_95763278_95763465_95765168_95765262_95767394_95767526_95770152_95770297_95772815_95772910_95775467_95775594_95779588_95779796_95781089_95781204_95785715_95785832_95787790_95787912_95789348_95789487_95790302_95790496_95792531_95792711_95796989_95797155_95798482_95798575_95802397_95802490_95802719_95802898_95803705_95803886_95804800_95804961_95809221_95809402_95814382_95814526_95817531_95817630_95818347_95818581_95819566_95819702_95821202_95821404_95822922_95823067_95824638_95824790_95827140_95827298_95827396_95827551_95829142_95829295_95832597_95832704_95833503
ENSMUSG00000032409.16_4	chr9	+	5138	28	ISM	ENSMUSG00000032409.16	ENSMUST00000034980.9	8056	47	43	40947	1	4345	5prime_fragment	FALSE	canonical	3	80	junction_14	14.9254204491194	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTGGTGACATGTTCTT	NA	False	NA	NA	False	AATAAA	-11	NA	95739692	95792750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_95739837_95743421_95743514_95744835_95744986_95747020_95747899_95748635_95748815_95749546_95749739_95751934_95752126_95752672_95752826_95753056_95753250_95753486_95753741_95756130_95756322_95756403_95756505_95756755_95756928_95757646_95757818_95760507_95760703_95763278_95763465_95765168_95765262_95767394_95767526_95770152_95770297_95772815_95772910_95775467_95775594_95779588_95779796_95781089_95781204_95785715_95785832_95787790_95787912_95789348_95789487_95790302_95790496_95792531
ENSMUSG00000032410.14_1	chr9	+	2221	12	ISM	ENSMUSG00000032410.14	ENSMUST00000189612.7	3357	21	-72	21726	0	335	5prime_fragment	FALSE	canonical	3	43	junction_4	6.10243143521397	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTATGGCTTGTTTTGTT	NA	False	NA	NA	False	GATAAA	-22	NA	95836812	95860721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849
ENSMUSG00000032410.14_2	chr9	+	3504	27	ISM	ENSMUSG00000032410.14	ENSMUST00000034981.14	5499	42	15	41162	8	0	5prime_fragment	FALSE	canonical	3	35	junction_24	7.47273149365955	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATTTAAAATTTCTTT	NA	False	NA	NA	False	AATATA	-35	NA	95836827	95893918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268_95880401_95881466_95881630_95884187_95884302_95885896_95885996_95888049_95888166_95888753_95888901_95893263_95893354_95893576
ENSMUSG00000032410.14_34	chr9	+	3150	1	ISM	ENSMUSG00000032410.14	ENSMUST00000185633.7	10256	42	99882	5	37186	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGACACTGCTGCTTTGCT	NA	False	NA	20	True	ATTAAA	-20	NA	95936701	95939851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_95936700_95939900
ENSMUSG00000032410.14_4	chr9	+	9978	42	FSM	ENSMUSG00000032410.14	ENSMUST00000185633.7	10256	42	8	270	8	-270	multi-exon	FALSE	canonical	3	17	junction_40	10.3589359987776	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGAAGACTTCTTTGTG	NA	False	NA	NA	False	ATTAAA	-7	NA	95836827	95939586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268_95880401_95881466_95881630_95884187_95884302_95885896_95885996_95888049_95888166_95888753_95888901_95893263_95893354_95893576_95893713_95899803_95899861_95900099_95900233_95903858_95903929_95906074_95906274_95908890_95908987_95915637_95915747_95917687_95917750_95920671_95920783_95920931_95921055_95921752_95921898_95927538_95927715_95929835_95929950_95930393_95930497_95933646_95933808_95934565
ENSMUSG00000032410.14_6	chr9	+	5438	42	NNC	ENSMUSG00000032410.14	novel	10256	42	NA	NA	1	24	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_40	10.8501775727909	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAATAAATAGCAAACT	NA	False	NA	NA	False	ATTAAA	-7	NA	95836846	95935104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268_95880401_95881466_95881630_95884187_95884302_95885896_95885996_95888049_95888166_95888753_95888901_95893263_95893354_95893576_95893713_95899803_95899861_95900099_95900233_95903858_95903929_95906074_95906274_95908890_95908987_95915637_95915747_95917687_95917750_95920671_95920783_95920931_95921055_95921752_95921898_95927538_95927715_95929835_95929950_95930393_95930497_95933685_95933808_95934565
ENSMUSG00000032410.14_7	chr9	+	7901	42	FSM	ENSMUSG00000032410.14	ENSMUST00000034981.14	5499	42	34	-2436	1	-2340	multi-exon	FALSE	canonical	3	16	junction_37	10.9955915670048	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTCAGTTGTGTCAAAA	NA	False	NA	6	True	ACTAAA	-14	NA	95836846	95937516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268_95880401_95881466_95881630_95884187_95884302_95885896_95885996_95888049_95888166_95888753_95888901_95893263_95893354_95893576_95893713_95899803_95899861_95900099_95900233_95903858_95903929_95906074_95906274_95908890_95908987_95915637_95915747_95917687_95917750_95920671_95920783_95920931_95921055_95921752_95921910_95927538_95927715_95929835_95929950_95930393_95930497_95933646_95933808_95934565
ENSMUSG00000032410.14_9	chr9	+	3598	29	ISM	ENSMUSG00000032410.14	ENSMUST00000034981.14	5499	42	12	34741	5	-2222	5prime_fragment	TRUE	canonical	3	35	junction_24	7.40346030514083	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTTTGTGTTTTCACT	NA	False	NA	NA	False	NA	NA	NA	95836824	95900339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268_95880401_95881466_95881630_95884187_95884302_95885896_95885996_95888049_95888166_95888753_95888901_95893263_95893354_95893576_95893713_95899803_95899861_95900099
ENSMUSG00000032411.16_10	chr9	+	2638	13	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	-7	-1	combination_of_known_junctions	FALSE	canonical	3	208	junction_3	91.9133045622643	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATGTTCTTTTCCATAT	NA	False	NA	-73	True	NA	NA	NA	96078349	96200957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ENSMUSG00000032411.16_102	chr9	+	3794	1	ISM	ENSMUSG00000032411.16	ENSMUST00000034982.16	7354	13	123525	24	9263	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAATAATTTAAA	5561	False	NA	NA	False	NA	NA	NA	96201881	96205675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_96201900_96205700
ENSMUSG00000032411.16_15	chr9	+	2689	13	FSM	ENSMUSG00000032411.16	ENSMUST00000034982.16	7354	13	-5	4670	-5	-5	multi-exon	FALSE	canonical	3	58	junction_3	115.436009209528	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTAACTCAATATTCAGT	NA	False	NA	-1	True	NA	NA	NA	96078351	96201029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_96078614_96084183_96084242_96105146_96105252_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ENSMUSG00000032411.16_19	chr9	+	2578	13	NIC	ENSMUSG00000032411.16	novel	2646	14	NA	NA	-6	-3	combination_of_known_junctions	FALSE	canonical	3	40	junction_2	119.273029455764	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATACATGTTCTTTTCCAT	NA	False	NA	-75	True	NA	NA	NA	96078350	96200955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_96078614_96084183_96084242_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ENSMUSG00000032411.16_20	chr9	+	2643	12	NIC	ENSMUSG00000032411.16	novel	7354	13	NA	NA	-7	-5	combination_of_known_junctions	FALSE	canonical	3	58	junction_3	115.371408864896	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTAACTCAATATTCAGT	NA	False	NA	-1	True	NA	NA	NA	96078349	96201029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ENSMUSG00000032411.16_23	chr9	+	2687	14	FSM	ENSMUSG00000032411.16	ENSMUST00000188750.7	1713	14	-41	-933	-8	-1	multi-exon	FALSE	canonical	3	208	junction_3	94.2279120445955	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATGTTCTTTTCCATAT	NA	False	NA	-73	True	NA	NA	NA	96078348	96200957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ENSMUSG00000032411.16_3	chr9	+	2595	13	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	-7	-20	combination_of_known_junctions	FALSE	canonical	3	86	junction_7	114.876352609616	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTTTTGTCTTTATTTC	NA	False	NA	NA	False	AATGAA	-10	NA	96078349	96200911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ENSMUSG00000032411.16_5	chr9	+	2842	15	NNC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_3	119.483326477473	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTAACTCAATATTCAGT	NA	False	NA	-1	True	NA	NA	NA	96078349	96201029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_96078614_96084183_96084242_96093185_96093270_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ENSMUSG00000032411.16_54	chr9	+	2758	14	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	-5	-6	combination_of_known_junctions	FALSE	canonical	3	86	junction_8	113.611608707632	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACTAACTCAATATTCAG	NA	False	NA	-2	True	NA	NA	NA	96078351	96201028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ENSMUSG00000032411.16_58	chr9	+	2789	15	NIC	ENSMUSG00000032411.16	novel	2646	14	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	128.768440327938	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTAACTCAATATTCAGT	NA	False	NA	-1	True	NA	NA	NA	96078357	96201029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96129102_96129142_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
ENSMUSG00000032412.9_0	chr9	-	1878	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	87	29	87	-29	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATACAAAAACTTCAAACT	NA	False	NA	-39	True	AATAAA	-12	NA	96246408	96214736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
ENSMUSG00000032412.9_4	chr9	-	1011	1	ISM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	30748	29	9887	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATACAAAAACTTCAAACT	NA	False	NA	-39	True	AATAAA	-12	NA	96215747	96214736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_96214700_96215700
ENSMUSG00000032413.13_1	chr9	-	5728	24	FSM	ENSMUSG00000032413.13	ENSMUST00000034984.8	5813	24	83	2	2	-2	multi-exon	FALSE	canonical	3	17	junction_5	16.7988207345585	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGTTCTTTGTGAGACC	NA	False	NA	NA	False	AATAAA	-13	NA	96513587	96421354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_96424529_96426331_96426519_96426840_96426945_96427641_96427851_96428299_96428383_96434355_96434463_96435165_96435240_96439452_96439531_96442750_96442835_96448068_96448176_96450416_96450541_96451072_96451148_96451743_96451859_96452718_96452868_96453917_96454075_96458338_96458441_96459525_96459603_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
ENSMUSG00000032413.13_17	chr9	-	4889	17	NNC	ENSMUSG00000032413.13	novel	5813	24	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	18.8164447691374	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGAAGTCTTTTTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	96513566	96439349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_96442548_96442750_96442835_96448068_96448176_96450416_96450541_96451072_96451148_96451743_96451859_96452718_96452868_96453917_96454075_96458338_96458441_96459525_96459603_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
ENSMUSG00000032413.13_18	chr9	-	1888	17	ISM	ENSMUSG00000032413.13	ENSMUST00000034984.8	5813	24	88	17997	7	0	5prime_fragment	FALSE	canonical	3	24	junction_1	16.0028073708959	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGAAGTCTTTTTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	96513582	96439349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_96439531_96442750_96442835_96448068_96448176_96450416_96450541_96451072_96451148_96451743_96451859_96452718_96452868_96453917_96454075_96458338_96458441_96459525_96459603_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
ENSMUSG00000032413.13_21	chr9	-	828	8	NNC	ENSMUSG00000032413.13	novel	5813	24	NA	NA	14	-7970	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	17.5324771524745	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATTTAGTCTTTTTTC	NA	False	NA	-7	True	AATAAA	-18	NA	96513575	96461910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_96462029_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
ENSMUSG00000032413.13_29	chr9	-	5716	24	NIC	ENSMUSG00000032413.13	novel	5813	24	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	2	3	junction_23	17.772666509509	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTTCTTTGTGAGACCT	NA	False	NA	NA	False	AATAAA	-14	NA	96513608	96421353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_96424529_96426331_96426519_96426840_96426945_96427641_96427851_96428299_96428383_96434355_96434463_96435165_96435240_96439452_96439531_96442750_96442835_96448068_96448176_96450416_96450541_96451072_96451148_96451743_96451859_96452718_96452868_96453917_96454075_96458338_96458441_96459525_96459603_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513450
ENSMUSG00000032413.13_7	chr9	-	2501	1	ISM	ENSMUSG00000032413.13	ENSMUST00000034984.8	5813	24	89815	2	3377	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGTTCTTTGTGAGACC	NA	False	NA	NA	False	AATAAA	-13	NA	96423855	96421354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_96421400_96423900
ENSMUSG00000032415.15_0	chr9	-	1758	10	FSM	ENSMUSG00000032415.15	ENSMUST00000034986.14	1790	10	23	9	23	-9	multi-exon	TRUE	canonical	3	19	junction_5	4.12160822022031	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGCATGTGTTCTTTT	NA	False	NA	-9	True	ATTAAA	-17	NA	86346980	86189367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_86189930_86254393_86254533_86304893_86305058_86307314_86307424_86309420_86309491_86317336_86317407_86322638_86322808_86330815_86330907_86333866_86334064_86346793
ENSMUSG00000032417.11_0	chr9	+	1209	3	FSM	ENSMUSG00000032417.11	ENSMUST00000185566.7	1054	3	9	-164	9	-2	multi-exon	FALSE	canonical	3	38	junction_1	7	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAACTTGTCTCAAGTCC	NA	False	NA	4	True	AATAAA	-17	NA	86454052	86456950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_86454111_86454889_86455117_86456026
ENSMUSG00000032417.11_2	chr9	+	1368	3	FSM	ENSMUSG00000032417.11	ENSMUST00000034988.10	1355	3	-20	7	5	-7	multi-exon	FALSE	canonical	3	7	junction_1	22.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGAGCAACTTGTCTCA	NA	False	NA	-1	True	AATAAA	-12	NA	86454048	86456945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_86454271_86454889_86455117_86456026
ENSMUSG00000032418.16_0	chr9	-	3226	14	FSM	ENSMUSG00000032418.16	ENSMUST00000034989.15	3288	14	51	11	51	-11	multi-exon	TRUE	canonical	3	250	junction_5	30.9913139195733	582	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATGAATAATACCGTAAA	9661	False	NA	NA	False	ATTAAA	-9	NA	86577955	86463434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_86464961_86469015_86469115_86476496_86476671_86478108_86478252_86480771_86480878_86493905_86494020_86495593_86495692_86501777_86501888_86528363_86528468_86532920_86533083_86536695_86536772_86559916_86560067_86561871_86562006_86577725
ENSMUSG00000032419.9_0	chr9	-	4274	8	FSM	ENSMUSG00000032419.9	ENSMUST00000034991.8	4679	8	407	-2	-356	2	multi-exon	FALSE	canonical	0	0	junction_3	1.29362644830535	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTCTTGGAGTGTAAT	NA	False	NA	NA	False	ATTAAA	-19	NA	87612906	87584850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_87587999_87589819_87589915_87595550_87595616_87597575_87597744_87606354_87606527_87609416_87609519_87611513_87611719_87612587
ENSMUSG00000032420.9_0	chr9	+	3546	9	FSM	ENSMUSG00000032420.9	ENSMUST00000034992.8	3995	9	426	23	5	-23	multi-exon	FALSE	canonical	0	0	junction_1	0.695970545353753	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGCTGAAGATATAGT	NA	False	NA	NA	False	NA	NA	NA	88209675	88254122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_88210084_88234315_88234539_88237639_88237829_88245488_88245687_88246720_88246876_88248414_88248521_88249283_88249434_88251098_88251300_88252206
ENSMUSG00000032422.19_0	chr9	-	3078	28	FSM	ENSMUSG00000032422.19	ENSMUST00000165315.9	3109	28	25	6	3	-4	multi-exon	TRUE	canonical	3	141	junction_13	28.9754164757839	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACGGCCTTTTGTATTTA	NA	False	NA	-8	True	AATAAA	-34	NA	88320979	88258808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
ENSMUSG00000032422.19_13	chr9	-	3102	29	FSM	ENSMUSG00000032422.19	ENSMUST00000174806.9	3082	29	-13	-7	2	4	multi-exon	FALSE	canonical	3	13	junction_14	53.7773542165344	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATTACGGCCTTTTGTA	NA	False	NA	-12	True	AATAAA	-30	NA	88320980	88258812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88282775_88282803_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
ENSMUSG00000032423.13_0	chr9	-	2674	1	ISM	ENSMUSG00000032423.13	ENSMUST00000069221.12	9450	12	30144	2733	28329	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTAGGATCTCCAGGA	NA	False	NA	-27	True	AATAAA	-17	NA	88334468	88331794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_88331800_88334500
ENSMUSG00000032423.13_2	chr9	-	3400	12	FSM	ENSMUSG00000032423.13	ENSMUST00000174282.8	3404	12	2	2	2	-2	multi-exon	FALSE	canonical	3	172	junction_1	221.053263840518	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGGAGGCGAGTGTAAC	NA	False	NA	-17	True	AATAAA	-16	NA	88364247	88334743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88336346_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ENSMUSG00000032423.13_3	chr9	-	3403	12	FSM	ENSMUSG00000032423.13	ENSMUST00000069221.12	9450	12	365	5682	2	-2	multi-exon	FALSE	canonical	3	723	junction_1	80.8280493004688	1098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGGAGGCGAGTGTAAC	NA	False	NA	-17	True	AATAAA	-16	NA	88364247	88334743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ENSMUSG00000032423.13_31	chr9	-	2565	11	FSM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	360	19	1	-19	multi-exon	FALSE	canonical	3	754	junction_4	62.6802201655355	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGTATACGTACTAAAAC	NA	False	NA	NA	False	AATAAA	-15	NA	88364248	88337649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ENSMUSG00000032423.13_8	chr9	-	3289	11	FSM	ENSMUSG00000032423.13	ENSMUST00000174391.8	6257	11	59	2909	7	0	multi-exon	FALSE	canonical	3	68	junction_10	258.93213396564	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGTCATTAATATAAATG	NA	False	NA	34	True	AATAAA	-16	NA	88364242	88334692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88364108
ENSMUSG00000032425.16_2	chr9	+	3447	6	NIC	ENSMUSG00000032425.16	novel	3472	6	NA	NA	1	-13	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	4.17612260356422	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAATCCACTTCAG	NA	False	NA	NA	False	NA	NA	NA	88430138	88453101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_88430562_88434714_88434915_88436428_88436598_88449211_88449339_88449560_88449654_88450666
ENSMUSG00000032425.16_3	chr9	+	3370	6	FSM	ENSMUSG00000032425.16	ENSMUST00000162827.8	3472	6	89	13	9	-13	multi-exon	FALSE	canonical	3	7	junction_1	5.88557558782486	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAATCCACTTCAG	NA	False	NA	NA	False	NA	NA	NA	88430161	88453101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_88430562_88434768_88434915_88436428_88436598_88449211_88449339_88449560_88449654_88450666
ENSMUSG00000032431.7_1	chr9	-	1655	7	FSM	ENSMUSG00000032431.7	ENSMUST00000084881.5	1674	7	9	10	9	6	multi-exon	FALSE	canonical	3	526	junction_5	47.5280618862864	682	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATTTCTTTGGTCTCTCC	NA	False	NA	NA	False	GATAAA	-10	NA	114219734	114204211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_114204651_114207107_114207192_114208977_114209124_114210653_114210783_114213763_114213936_114215269_114215420_114219199
ENSMUSG00000032434.10_1	chr9	+	3349	4	FSM	ENSMUSG00000032434.10	ENSMUST00000035007.10	3383	4	33	1	33	-1	multi-exon	FALSE	canonical	3	606	junction_3	12.8322510366134	1532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTGTGCCTTCACAGT	NA	False	NA	18	True	AATAAA	-14	NA	114560273	114578411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_114560442_114566250_114566428_114569126_114569226_114575506
ENSMUSG00000032434.10_14	chr9	+	2152	1	ISM	ENSMUSG00000032434.10	ENSMUST00000035007.10	3383	4	16019	1	16019	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTGTGCCTTCACAGT	NA	False	NA	18	True	AATAAA	-14	NA	114576259	114578411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_114576300_114578400
ENSMUSG00000032435.10_2	chr9	+	2597	13	FSM	ENSMUSG00000032435.10	ENSMUST00000047404.7	2601	13	4	0	4	0	multi-exon	FALSE	canonical	3	336	junction_8	45.3210767744986	799	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGGGTCAAATAACGTG	2130	False	NA	3	True	AATAAA	-16	NA	114517861	114553370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
ENSMUSG00000032436.18_0	chr9	-	993	5	FSM	ENSMUSG00000032436.18	ENSMUST00000035009.16	993	5	-7	7	0	-4	multi-exon	FALSE	canonical	3	1122	junction_1	123.353911571543	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCAGGTTTCCTTATTG	NA	False	NA	-21	True	AATAAA	-9	NA	114610924	114585910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
ENSMUSG00000032436.18_1	chr9	-	4008	4	NIC	ENSMUSG00000032436.18	novel	993	5	NA	NA	1	-1	intron_retention	FALSE	canonical	3	1122	junction_1	141.662352875498	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGGTTTCCTTATTGCAT	NA	False	NA	-18	True	AATAAA	-12	NA	114610916	114585907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_114586360_114587872_114591074_114592286_114592461_114610735
ENSMUSG00000032436.18_8	chr9	-	2445	2	ISM	ENSMUSG00000032436.18	ENSMUST00000084867.9	874	4	21032	4	14651	-4	3prime_fragment	FALSE	canonical	3	1122	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCAGGTTTCCTTATTG	NA	False	NA	-21	True	AATAAA	-9	NA	114589868	114585910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_114586360_114587872
ENSMUSG00000032437.11_1	chr9	-	4250	16	FSM	ENSMUSG00000032437.11	ENSMUST00000035010.10	4221	16	-43	14	-43	-14	multi-exon	FALSE	canonical	3	623	junction_10	54.7444974403821	1435	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTATAACTAAATCTGGA	NA	False	NA	-48	True	AATAAA	-7	NA	115139532	115071662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_115073114_115075112_115075326_115077572_115077687_115079846_115080021_115080745_115080918_115081566_115081755_115082900_115083113_115083856_115084012_115085200_115085250_115086503_115086651_115087529_115087629_115095161_115095262_115096377_115096444_115105771_115106060_115109478_115109588_115138819
ENSMUSG00000032440.14_0	chr9	-	4565	7	FSM	ENSMUSG00000032440.14	ENSMUST00000035014.8	3476	7	133	-1222	38	1222	multi-exon	FALSE	canonical	1	1	junction_6	1.95078331845327	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCCGCAGACCACCTTG	NA	False	NA	NA	False	AATAAA	-26	NA	116004295	115916774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_115919626_115922013_115922142_115934101_115934244_115938571_115939372_115958883_115959075_115960612_115960782_116004011
ENSMUSG00000032440.14_1	chr9	-	4657	8	FSM	ENSMUSG00000032440.14	ENSMUST00000061101.12	8092	8	28	3407	28	1229	multi-exon	FALSE	canonical	1	1	junction_6	2.1189138534559	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGACCACCTTGCCTCTTG	NA	False	NA	NA	False	AATAAA	-33	NA	116004305	115916767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_115919626_115922013_115922142_115934101_115934244_115938571_115939372_115958883_115959075_115960612_115960782_115987338_115987414_116004011
ENSMUSG00000032440.14_2	chr9	-	1324	1	ISM	ENSMUSG00000032440.14	ENSMUST00000061101.12	8092	8	86227	3422	86227	1214	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATCCAAAGTCCGCAGA	NA	False	NA	NA	False	AATAAA	-18	NA	115918106	115916782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_115916800_115918100
ENSMUSG00000032446.15_0	chr9	+	3020	6	FSM	ENSMUSG00000032446.15	ENSMUST00000035020.15	3560	6	514	26	-3	-26	multi-exon	FALSE	canonical	3	9	junction_5	4.35430821141545	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAGGTATAGCTCTGTCT	NA	False	NA	NA	False	AATAAA	-16	NA	118307925	118315174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_118308615_118309534_118309690_118310332_118310455_118311056_118311216_118311300_118311363_118313341
ENSMUSG00000032446.15_1	chr9	+	2956	6	FSM	ENSMUSG00000032446.15	ENSMUST00000111763.8	2869	6	646	-733	-3	-33	multi-exon	FALSE	canonical	2	3	junction_5	6.66333249958307	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGGGACCAGGTATAGC	NA	False	NA	NA	False	AATAAA	-9	NA	118307925	118315167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_118308615_118309534_118309690_118310332_118310455_118311056_118311216_118311300_118311363_118313398
ENSMUSG00000032446.15_2	chr9	+	1720	5	FSM	ENSMUSG00000032446.15	ENSMUST00000150633.2	1647	5	-26	-47	-26	47	multi-exon	FALSE	canonical	3	18	junction_2	1.6393596310755	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAAACATGAAGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	118307902	118311872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_118308615_118309534_118309690_118310332_118310455_118311056_118311216_118311300
ENSMUSG00000032446.15_3	chr9	+	1698	5	NIC	ENSMUSG00000032446.15	novel	3560	6	NA	NA	425	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	7.69740215917033	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAACAAAACAA	NA	False	NA	NA	False	ATTAAA	-30	NA	118308353	118314435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_118308615_118310332_118310455_118311056_118311216_118311300_118311363_118313341
ENSMUSG00000032449.14_12	chr9	-	4616	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	33	-11	at_least_one_novel_splicesite	FALSE	canonical	3	76	junction_4	385.517410072992	108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTGTATCTTAAGAT	NA	False	NA	-15	True	ATTAAA	-26	NA	96993177	96957628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971581_96975129_96975231_96979155_96979234_96982127_96982293_96992963
ENSMUSG00000032449.14_3	chr9	-	2503	1	ISM	ENSMUSG00000032449.14	ENSMUST00000085206.11	5227	7	33079	615	6392	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	331	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTGTATCTTAAGAT	6469	False	NA	-15	True	ATTAAA	-26	NA	96960131	96957628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_96957600_96960100
ENSMUSG00000032449.14_4	chr9	-	4685	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	30	-11	at_least_one_novel_splicesite	FALSE	canonical	3	212	junction_4	351.164593073635	534	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTGTATCTTAAGAT	NA	False	NA	-15	True	ATTAAA	-26	NA	96993180	96957628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96975129_96975231_96979155_96979234_96982127_96982293_96992963
ENSMUSG00000032449.14_5	chr9	-	3849	2	ISM	ENSMUSG00000032449.14	ENSMUST00000035024.8	4043	3	4093	11	4093	-11	3prime_fragment	FALSE	canonical	3	1282	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTGTATCTTAAGAT	4170	False	NA	-15	True	ATTAAA	-26	NA	96962430	96957628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_96961293_96962245
ENSMUSG00000032449.14_6	chr9	-	4582	7	FSM	ENSMUSG00000032449.14	ENSMUST00000085206.11	5227	7	30	615	30	-11	multi-exon	FALSE	canonical	3	263	junction_3	363.380272197353	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTGTATCTTAAGAT	NA	False	NA	-15	True	ATTAAA	-26	NA	96993180	96957628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_96961293_96962245_96962536_96967109_96967177_96975129_96975231_96979155_96979234_96982127_96982293_96992963
ENSMUSG00000032449.14_7	chr9	-	5502	3	FSM	ENSMUSG00000032449.14	ENSMUST00000148995.8	532	3	-1343	-3627	-1343	-11	multi-exon	FALSE	canonical	3	1282	junction_1	9	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTGTATCTTAAGAT	NA	False	NA	-15	True	ATTAAA	-26	NA	96968657	96957628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_96961293_96962245_96962536_96967109
ENSMUSG00000032456.14_0	chr9	+	2110	5	NIC	ENSMUSG00000032456.14	novel	2166	5	NA	NA	12	-20	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	2.27760839478607	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCAAAAATACTAATGAAAA	NA	False	NA	NA	False	AATAAA	-6	NA	98178668	98293467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_98179034_98236074_98236218_98281508_98281693_98285586_98285667_98292129
ENSMUSG00000032458.7_0	chr9	+	3041	22	FSM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	2	7	2	-7	multi-exon	TRUE	canonical	3	669	junction_10	53.4673910412871	1264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAAGACTCTTGAGTTT	NA	False	NA	12	True	CATAAA	-13	NA	98445785	98470428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
ENSMUSG00000032459.10_0	chr9	-	1194	8	FSM	ENSMUSG00000032459.10	ENSMUST00000035034.10	1197	8	-2	5	-2	-5	multi-exon	FALSE	canonical	3	442	junction_2	42.1929484387994	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGTTTTCTGTAATTCG	NA	False	NA	-14	True	ATTAAA	-15	NA	98483715	98470787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_98470980_98472087_98472197_98474607_98474754_98476125_98476210_98476722_98476867_98478872_98479038_98480187_98480352_98483525
ENSMUSG00000032459.10_1	chr9	-	3604	7	NIC	ENSMUSG00000032459.10	novel	1197	8	NA	NA	-1	-5	intron_retention	FALSE	canonical	3	515	junction_4	22.0661883130428	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGTTTTCTGTAATTCG	NA	False	NA	-14	True	ATTAAA	-15	NA	98483714	98470787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_98470980_98472087_98474754_98476125_98476210_98476722_98476867_98478872_98479038_98480187_98480352_98483525
ENSMUSG00000032462.15_0	chr9	-	4789	24	FSM	ENSMUSG00000032462.15	ENSMUST00000035037.14	6478	24	-102	1791	-102	-44	multi-exon	FALSE	canonical	3	157	junction_2	24.902380296338	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTTCTCAGTCAAATAAA	NA	False	NA	0	True	ATTAAA	-27	NA	99022242	98920497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_98921904_98922973_98923107_98924576_98924723_98926797_98926922_98928599_98928768_98934357_98934437_98936023_98936134_98937394_98937574_98942237_98942338_98943783_98943928_98944889_98945012_98946072_98946262_98947612_98947664_98952293_98952425_98953400_98953498_98955631_98955884_98970657_98970736_98972202_98972374_98975095_98975276_98976492_98976717_98983227_98983454_98987583_98987771_99004336_99004430_99022043
ENSMUSG00000032462.15_1	chr9	-	4548	23	NIC	ENSMUSG00000032462.15	novel	6478	24	NA	NA	-87	-44	combination_of_known_splicesites	FALSE	canonical	3	13	junction_20	50.0203470996248	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTTCTCAGTCAAATAAA	NA	False	NA	0	True	ATTAAA	-27	NA	99022227	98920497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_98921904_98922973_98923107_98924576_98924723_98926797_98926922_98928599_98928768_98934357_98934437_98936023_98936134_98937394_98937574_98942237_98942338_98943783_98943928_98944889_98945012_98946072_98946262_98947612_98947664_98952293_98952425_98953400_98953498_98955631_98955884_98970657_98970736_98972202_98972374_98975095_98975276_98976492_98976717_98987583_98987771_99004336_99004430_99022043
ENSMUSG00000032463.11_0	chr9	+	995	5	FSM	ENSMUSG00000032463.11	ENSMUST00000035038.8	1019	5	21	3	-7	-3	multi-exon	FALSE	canonical	3	266	junction_2	16.8430252627015	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGAGGTGGGTTTGGTTTC	3565	False	NA	6	True	AATAAA	-20	NA	98868446	98884071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_98868566_98874153_98874287_98874565_98874795_98881019_98881070_98883607
ENSMUSG00000032463.11_2	chr9	+	4945	4	ISM	ENSMUSG00000032463.11	ENSMUST00000035038.8	1019	5	1659	3	1625	-3	3prime_fragment	FALSE	canonical	3	266	junction_1	19.4307888557196	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGAGGTGGGTTTGGTTTC	5203	False	NA	6	True	AATAAA	-20	NA	98870084	98884071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_98874287_98874565_98874795_98881019_98881070_98883607
ENSMUSG00000032463.11_3	chr9	+	1044	6	FSM	ENSMUSG00000032463.11	ENSMUST00000112911.9	803	6	28	-269	1	-3	multi-exon	FALSE	canonical	3	19	junction_1	126.927695953247	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGAGGTGGGTTTGGTTTC	3573	False	NA	6	True	AATAAA	-20	NA	98868454	98884071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_98868566_98872967_98873025_98874153_98874287_98874565_98874795_98881019_98881070_98883607
ENSMUSG00000032468.12_0	chr9	-	2690	22	FSM	ENSMUSG00000032468.12	ENSMUST00000035043.12	4647	22	234	1723	2	-1723	multi-exon	FALSE	canonical	3	93	junction_7	54.8151294142266	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTACATAGATTTTCTTT	NA	False	NA	-1	True	AGTAAA	-25	NA	99450718	99362147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
ENSMUSG00000032468.12_19	chr9	-	2823	12	FSM	ENSMUSG00000032468.12	ENSMUST00000185524.7	2820	12	-16	13	2	-13	multi-exon	FALSE	canonical	3	193	junction_11	21.8011297000487	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTAAAAACTATAGTTTT	NA	False	NA	-14	True	AATAAA	-15	NA	99450718	99400869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
ENSMUSG00000032468.12_20	chr9	-	2753	11	FSM	ENSMUSG00000032468.12	ENSMUST00000186049.2	2761	11	-1	9	-1	-9	multi-exon	FALSE	canonical	3	18	junction_10	66.7805360864975	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACTATAGTTTTTATG	NA	False	NA	-10	True	AATAAA	-19	NA	99450721	99400865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99450654
ENSMUSG00000032468.12_3	chr9	-	4212	21	NIC	ENSMUSG00000032468.12	novel	4647	22	NA	NA	-4	-130	combination_of_known_junctions	TRUE	canonical	3	18	junction_20	65.4877660330538	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGTTGCATTTTTTTTC	NA	False	NA	-124	True	TATAAA	-22	NA	99450724	99360554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99450654
ENSMUSG00000032469.13_0	chr9	+	2079	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	20	162	-9	-162	multi-exon	FALSE	canonical	3	227	junction_3	17.2933867270063	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTATCCTATTGGCTCTT	6426	False	NA	NA	False	ATTAAA	-17	NA	99457871	99466392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
ENSMUSG00000032469.13_15	chr9	+	878	1	ISM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	7773	52	3275	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTAATATGTAATTATTC	NA	False	NA	-3	True	ATTAAA	-8	NA	99465624	99466502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_99465600_99466500
ENSMUSG00000032469.13_3	chr9	+	1999	7	NIC	ENSMUSG00000032469.13	novel	2261	8	NA	NA	-10	-162	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	92.1188845399731	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTATCCTATTGGCTCTT	6425	False	NA	NA	False	ATTAAA	-17	NA	99457870	99466392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_99458179_99458628_99458754_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
ENSMUSG00000032470.18_0	chr9	-	1469	6	FSM	ENSMUSG00000032470.18	ENSMUST00000035045.15	4701	6	719	2513	264	-5	multi-exon	FALSE	canonical	3	447	junction_5	30.9644957976067	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAATAGGGCTGTTGTCTT	3958	False	NA	16	True	GATAAA	-5	NA	99318715	99269985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318362
ENSMUSG00000032470.18_1	chr9	-	2055	1	ISM	ENSMUSG00000032470.18	ENSMUST00000035045.15	4701	6	49902	5	7216	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGATCCTGCCTTATTTCC	NA	False	NA	-9	True	NA	NA	NA	99269532	99267477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_99267500_99269500
ENSMUSG00000032470.18_3	chr9	-	1408	6	NIC	ENSMUSG00000032470.18	novel	4701	6	NA	NA	-219	-5	combination_of_known_junctions	FALSE	canonical	3	96	junction_5	168.084978507896	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAATAGGGCTGTTGTCTT	2331	False	NA	16	True	GATAAA	-5	NA	99302424	99269985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99302132
ENSMUSG00000032475.16_0	chr9	-	1631	1	ISM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	50641	1570	11363	1140	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGATACCTTTGGAGGTG	NA	False	NA	NA	False	AGTAAA	-9	NA	100377546	100375915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_100375900_100377500
ENSMUSG00000032475.16_1	chr9	-	1725	4	FSM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	25	2726	13	-16	multi-exon	FALSE	canonical	3	120	junction_2	6.34209919681348	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAATAAGAAATTATTTT	NA	False	NA	-56	True	AATAAA	-2	NA	100428162	100377071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_100377725_100379310_100380024_100390481_100390726_100428047
ENSMUSG00000032475.16_2	chr9	-	1612	3	ISM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	37460	2726	-1818	-16	3prime_fragment	FALSE	canonical	3	120	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAATAAGAAATTATTTT	NA	False	NA	-56	True	AATAAA	-2	NA	100390727	100377071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_100377725_100379310_100380024_100390481
ENSMUSG00000032477.15_2	chr9	+	3631	15	FSM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	0	1	0	-1	multi-exon	FALSE	canonical	3	454	junction_8	39.8577188898467	995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCTGCCTAGTTCCTA	NA	False	NA	27	True	AATAAA	-17	NA	109704646	109722962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708901_109709004_109710540_109710646_109712556_109712683_109713186_109713262_109713410_109713579_109716315_109716415_109717941_109718005_109718099_109718199_109718778_109718910_109720812_109720925_109721146
ENSMUSG00000032477.15_7	chr9	+	3629	15	NNC	ENSMUSG00000032477.15	novel	3632	15	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_4	122.641442707544	202	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCTGCCTAGTTCCTA	NA	False	NA	27	True	AATAAA	-17	NA	109704645	109722962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708904_109709004_109710540_109710646_109712556_109712683_109713186_109713262_109713410_109713579_109716315_109716415_109717941_109718005_109718099_109718199_109718778_109718910_109720812_109720925_109721146
ENSMUSG00000032478.15_0	chr9	+	1036	7	FSM	ENSMUSG00000032478.15	ENSMUST00000035053.12	1074	7	25	13	2	5	multi-exon	FALSE	canonical	3	194	junction_1	146.935359937627	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTGGCAGTACTCCTGT	NA	False	NA	12	True	AATAAA	-19	NA	109661850	109672029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_109661876_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUSG00000032478.15_2	chr9	+	1104	7	FSM	ENSMUSG00000032478.15	ENSMUST00000200005.5	719	7	46	-431	8	4	multi-exon	FALSE	canonical	3	252	junction_1	126.972000413039	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCTGGCAGTACTCCTG	NA	False	NA	11	True	AATAAA	-18	NA	109661862	109672028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUSG00000032478.15_33	chr9	+	1012	6	FSM	ENSMUSG00000032478.15	ENSMUST00000200468.2	865	6	151	-298	0	3	multi-exon	FALSE	canonical	3	493	junction_3	57.3431774494578	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGCTGGCAGTACTCCT	NA	False	NA	10	True	AATAAA	-17	NA	109662260	109672027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUSG00000032479.16_0	chr9	+	4943	19	FSM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	364	784	24	1	multi-exon	FALSE	canonical	3	256	junction_1	32.471877671397	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTGTATTGAAATGGCC	NA	False	NA	21	True	AATAAA	-13	NA	109760891	109912239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
ENSMUSG00000032479.16_137	chr9	+	1759	1	ISM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	150723	14	2383	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCACCATGTTATGTTGC	NA	False	NA	11	True	AATAAA	-11	NA	109911250	109913009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_109911200_109913000
ENSMUSG00000032479.16_3	chr9	+	4736	17	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	24	1	combination_of_known_junctions	FALSE	canonical	3	75	junction_13	70.836712541944	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTGTATTGAAATGGCC	NA	False	NA	21	True	AATAAA	-13	NA	109760891	109912239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109907070_109907153_109908848_109908962_109910488_109910679_109910802
ENSMUSG00000032479.16_6	chr9	+	4833	19	FSM	ENSMUSG00000032479.16	ENSMUST00000165876.8	5573	19	-36	776	28	1	multi-exon	FALSE	canonical	3	101	junction_18	61.7868698345418	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTGTATTGAAATGGCC	NA	False	NA	21	True	AATAAA	-13	NA	109760895	109912239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910908
ENSMUSG00000032479.16_64	chr9	+	4812	18	ISM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	47404	784	9847	1	3prime_fragment	FALSE	canonical	3	289	junction_4	27.7995792953156	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTGTATTGAAATGGCC	NA	False	NA	21	True	AATAAA	-13	NA	109807931	109912239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
ENSMUSG00000032479.16_90	chr9	+	3481	13	ISM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	103575	784	-1707	1	3prime_fragment	FALSE	canonical	3	302	junction_7	26.1990245789588	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTGTATTGAAATGGCC	2451	False	NA	21	True	AATAAA	-13	NA	109864102	109912239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
ENSMUSG00000032480.18_1	chr9	-	3751	19	FSM	ENSMUSG00000032480.18	ENSMUST00000062368.13	3806	19	52	3	3	0	multi-exon	FALSE	canonical	3	264	junction_18	79.7176537599273	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGCTGTCCTCCCA	NA	False	NA	-4	True	AATAAA	-18	NA	109930103	109913390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
ENSMUSG00000032480.18_16	chr9	-	3957	23	FSM	ENSMUSG00000032480.18	ENSMUST00000198425.5	3968	23	8	3	-3	0	multi-exon	FALSE	canonical	3	120	junction_20	140.114150629448	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGCTGTCCTCCCA	NA	False	NA	-4	True	AATAAA	-18	NA	109946482	109913390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942094_109944103_109944230_109944558_109944651_109946425
ENSMUSG00000032480.18_5	chr9	-	4022	23	FSM	ENSMUSG00000032480.18	ENSMUST00000197928.5	4441	23	416	3	-3	0	multi-exon	FALSE	canonical	3	162	junction_20	135.338876788039	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGCTGTCCTCCCA	NA	False	NA	-4	True	AATAAA	-18	NA	109946482	109913390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944230_109944558_109944651_109946425
ENSMUSG00000032481.18_1	chr9	+	5645	28	FSM	ENSMUSG00000032481.18	ENSMUST00000088716.12	5717	28	62	10	5	-10	multi-exon	FALSE	canonical	3	994	junction_27	99.253261289205	1668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAATTCTAGTCCCATTCT	2507	False	NA	14	True	AATAAA	-14	NA	109961109	110069236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944_110064122_110066886
ENSMUSG00000032481.18_145	chr9	+	1717	1	ISM	ENSMUSG00000032481.18	ENSMUST00000088716.12	5717	28	106475	7	2061	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTAGTCCCATTCTCTG	3109	False	NA	17	True	AATAAA	-17	NA	110067522	110069239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110067500_110069200
ENSMUSG00000032481.18_2	chr9	+	3527	27	FSM	ENSMUSG00000032481.18	ENSMUST00000197984.5	3538	27	5	6	5	-6	multi-exon	FALSE	canonical	3	1122	junction_24	83.6874645091864	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGACATGCATAGTTCCT	2507	False	NA	10	True	ATTAAA	-20	NA	109961109	110064353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944
ENSMUSG00000032482.10_0	chr9	+	2188	5	FSM	ENSMUSG00000032482.10	ENSMUST00000196060.5	3790	5	1593	9	-107	4	multi-exon	TRUE	canonical	3	35	junction_4	8.38152730712011	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTCCACTTCCTTAGTG	NA	False	NA	11	True	AATAAA	-12	NA	110074443	110091635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110074763_110075362_110076459_110080026_110080216_110085212_110085289_110091127
ENSMUSG00000032482.10_1	chr9	+	2220	5	FSM	ENSMUSG00000032482.10	ENSMUST00000035058.10	3870	5	1649	1	-51	-1	multi-exon	FALSE	canonical	2	3	junction_4	20.3531324370476	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCCTTAGTGCCGTGGC	NA	False	NA	18	True	AATAAA	-19	NA	110074499	110091642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110074763_110075362_110076459_110080026_110080216_110085212_110085370_110091127
ENSMUSG00000032482.10_2	chr9	+	1969	4	FSM	ENSMUSG00000032482.10	ENSMUST00000199736.2	2107	4	126	12	126	0	multi-exon	FALSE	canonical	3	35	junction_3	9.53356643071673	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGCTGTCCACTTCCTT	NA	False	NA	7	True	AATAAA	-8	NA	110075258	110091631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110076459_110080026_110080216_110085212_110085289_110091127
ENSMUSG00000032482.10_4	chr9	+	3725	1	ISM	ENSMUSG00000032482.10	ENSMUST00000197850.5	7868	4	11166	2142	10632	-2142	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAGAAGAAG	3121	False	NA	NA	False	NA	NA	NA	110085764	110089489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110085800_110089500
ENSMUSG00000032485.15_0	chr9	+	4096	23	NIC	ENSMUSG00000032485.15	novel	619	5	NA	NA	20	-15	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	21.4736528936053	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCACATTTACCAGG	NA	False	NA	-4	True	AATAAA	-8	NA	110162383	110214003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110162418_110182013_110182233_110191461_110191592_110201264_110201423_110202043_110202265_110202457_110202564_110203064_110203238_110203577_110203705_110205630_110205744_110206706_110206802_110207411_110207511_110207636_110207856_110208523_110208901_110209268_110209458_110209561_110209764_110209840_110209957_110210039_110210554_110210630_110210717_110212616_110212700_110212799_110212967_110213133_110213215_110213334_110213542_110213623
ENSMUSG00000032485.15_18	chr9	+	4064	22	ISM	ENSMUSG00000032485.15	ENSMUST00000098350.10	4227	23	19588	15	-8240	-15	3prime_fragment	FALSE	canonical	3	74	junction_11	17.7776643987314	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCACATTTACCAGG	NA	False	NA	-4	True	AATAAA	-8	NA	110182011	110214003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110182233_110191461_110191592_110201264_110201423_110202043_110202265_110202457_110202564_110203064_110203238_110203577_110203705_110205630_110205744_110206706_110206802_110207411_110207511_110207636_110207856_110208523_110208901_110209268_110209458_110209561_110209764_110209840_110209957_110210039_110210554_110210630_110210717_110212616_110212700_110212799_110212967_110213133_110213215_110213334_110213542_110213623
ENSMUSG00000032485.15_29	chr9	+	2555	12	ISM	ENSMUSG00000032485.15	ENSMUST00000098350.10	4227	23	45279	15	342	-15	3prime_fragment	FALSE	canonical	3	74	junction_1	21.5210832625449	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCACATTTACCAGG	9980	False	NA	-4	True	AATAAA	-8	NA	110207702	110214003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110207856_110208523_110208901_110209268_110209458_110209561_110209764_110209840_110209957_110210039_110210554_110210630_110210717_110212616_110212700_110212799_110212967_110213133_110213215_110213334_110213542_110213623
ENSMUSG00000032485.15_30	chr9	+	2264	11	ISM	ENSMUSG00000032485.15	ENSMUST00000098350.10	4227	23	46238	15	1301	-15	3prime_fragment	FALSE	canonical	3	85	junction_4	19.4473648600524	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCACATTTACCAGG	NA	False	NA	-4	True	AATAAA	-8	NA	110208661	110214003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110208901_110209268_110209458_110209561_110209764_110209840_110209957_110210039_110210554_110210630_110210717_110212616_110212700_110212799_110212967_110213133_110213215_110213334_110213542_110213623
ENSMUSG00000032485.15_7	chr9	+	4193	23	FSM	ENSMUSG00000032485.15	ENSMUST00000098350.10	4227	23	19	15	19	-15	multi-exon	FALSE	canonical	3	36	junction_1	22.4939385774762	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCACATTTACCAGG	NA	False	NA	-4	True	AATAAA	-8	NA	110162442	110214003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110162574_110182013_110182233_110191461_110191592_110201264_110201423_110202043_110202265_110202457_110202564_110203064_110203238_110203577_110203705_110205630_110205744_110206706_110206802_110207411_110207511_110207636_110207856_110208523_110208901_110209268_110209458_110209561_110209764_110209840_110209957_110210039_110210554_110210630_110210717_110212616_110212700_110212799_110212967_110213133_110213215_110213334_110213542_110213623
ENSMUSG00000032489.18_0	chr9	+	3169	21	NIC	ENSMUSG00000032489.18	novel	2956	21	NA	NA	-193	15	combination_of_known_junctions	TRUE	canonical	0	0	junction_7	1.07121426428143	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGTCGGGACTTCTCTGG	625	False	NA	NA	False	NA	NA	NA	110305832	110353317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110306152_110312128_110312227_110314102_110314269_110317603_110317711_110318903_110319129_110323469_110323554_110323659_110323753_110324878_110325027_110325984_110326050_110330656_110330735_110335260_110335330_110335728_110335834_110338525_110338582_110339448_110339540_110340388_110340523_110343496_110343692_110346572_110346788_110348102_110348280_110348567_110348684_110350327_110350433_110352794
ENSMUSG00000032491.15_0	chr9	-	2018	4	NIC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	7	-2	intron_retention	FALSE	canonical	3	126	junction_2	1.88561808316413	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTACTTGGCTCCTTGGA	8952	False	NA	-7	True	ATTAAA	-23	NA	110453492	110450204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_110450806_110450907_110451051_110451139_110452304_110453382
ENSMUSG00000032491.15_1	chr9	-	1188	5	FSM	ENSMUSG00000032491.15	ENSMUST00000035069.14	1223	5	33	2	12	-2	multi-exon	FALSE	canonical	3	119	junction_3	3.96074487943871	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTACTTGGCTCCTTGGA	8957	False	NA	-7	True	ATTAAA	-23	NA	110453487	110450204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452304_110453382
ENSMUSG00000032491.15_5	chr9	-	745	2	ISM	ENSMUSG00000032491.15	ENSMUST00000196735.2	799	4	1339	-371	1339	-2	3prime_fragment	TRUE	canonical	3	130	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTACTTGGCTCCTTGGA	8189	False	NA	-7	True	ATTAAA	-23	NA	110451051	110450204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_110450806_110450907
ENSMUSG00000032491.15_6	chr9	-	919	3	ISM	ENSMUSG00000032491.15	ENSMUST00000196735.2	799	4	1076	-371	1076	-2	3prime_fragment	FALSE	canonical	3	126	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTACTTGGCTCCTTGGA	9757	False	NA	-7	True	ATTAAA	-23	NA	110451314	110450204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_110450806_110450907_110451051_110451139
ENSMUSG00000032494.13_2	chr9	-	1859	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	64	9	0	-9	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	6026	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAAAATGTGAGTAGTG	NA	False	NA	-24	True	AGTAAA	-12	NA	110775162	110768679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
ENSMUSG00000032495.9_17	chr9	+	1572	7	NNC	ENSMUSG00000032495.9	novel	3657	9	NA	NA	-52	-1846	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_4	82.1734277137216	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	110789849	110811288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_110790078_110791582_110791740_110795508_110795646_110799081_110799248_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_18	chr9	+	1474	7	ISM	ENSMUSG00000032495.9	ENSMUST00000035076.9	3657	9	9315	1846	26	-1846	3prime_fragment	FALSE	canonical	3	227	junction_2	34.6959011347962	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	110789927	110811288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_21	chr9	+	1336	6	NIC	ENSMUSG00000032495.9	novel	3657	9	NA	NA	7	-1846	combination_of_known_junctions	FALSE	canonical	3	86	junction_1	83.1033092000553	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	110789908	110811288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110790078_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_4	chr9	+	1789	9	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-632	-1846	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	94.0634759085587	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	110782234	110811288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_110782345_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_6	chr9	+	1900	9	NIC	ENSMUSG00000032495.9	novel	666	5	NA	NA	-141	-1856	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	99.4054198723591	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATCTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110782725	110811278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110782957_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032497.20_0	chr9	+	1824	15	FSM	ENSMUSG00000032497.20	ENSMUST00000196981.5	1839	15	12	3	-10	-3	multi-exon	FALSE	canonical	0	0	junction_2	57.6262146270679	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGGATTTGGATTTTGTT	NA	False	NA	43	True	AATGAA	-15	NA	110947192	111053287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110947458_110948707_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111022114_111022187_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
ENSMUSG00000032497.20_2	chr9	+	1725	14	FSM	ENSMUSG00000032497.20	ENSMUST00000098340.7	3191	14	-8	1474	-8	-28	multi-exon	FALSE	canonical	0	0	junction_2	68.9842619904487	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGAATGAAGCAGGTTTA	NA	False	NA	18	True	ATTAAA	-26	NA	110947194	111053262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110947458_110948707_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
ENSMUSG00000032498.10_20	chr9	-	4558	16	NIC	ENSMUSG00000032498.10	novel	2394	17	NA	NA	1	-5	intron_retention	FALSE	canonical	3	322	junction_5	32.5504053567523	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTGTGATTTTTTTTTT	NA	False	NA	-32	True	AATAAA	-10	NA	111100601	111057327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
ENSMUSG00000032498.10_6	chr9	-	2498	19	FSM	ENSMUSG00000032498.10	ENSMUST00000035079.10	2754	19	258	-2	1	2	multi-exon	FALSE	canonical	0	0	junction_3	91.190277259512	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTTTTTTTTTATATA	NA	False	NA	-25	True	AATAAA	-17	NA	111100601	111057320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
ENSMUSG00000032498.10_9	chr9	-	2495	19	NIC	ENSMUSG00000032498.10	novel	2754	19	NA	NA	1	4	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	111.636756635522	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTTTTTTTTATATAAC	NA	False	NA	-23	True	AATAAA	-19	NA	111100601	111057318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097372_111100476
ENSMUSG00000032500.11_0	chr9	+	3002	5	FSM	ENSMUSG00000032500.11	ENSMUST00000111879.5	3005	5	-2	5	-2	-5	multi-exon	FALSE	canonical	3	6	junction_1	10.8483869768736	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGATCTGCCTTGTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	111268146	111318181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_111268421_111296545_111298384_111311685_111311819_111313984_111314153_111317592
ENSMUSG00000032500.11_1	chr9	+	2109	4	ISM	ENSMUSG00000032500.11	ENSMUST00000111879.5	3005	5	29014	7	29014	-7	3prime_fragment	FALSE	canonical	3	22	junction_1	4.96655480858378	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAAGATCTGCCTTGTT	7260	False	NA	NA	False	AATAAA	-13	NA	111297162	111318179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_111298384_111311685_111311819_111313984_111314153_111317592
ENSMUSG00000032500.11_3	chr9	+	702	2	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	48004	-8	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGAAAGATCTGCCTTGT	4038	False	NA	NA	False	AATAAA	-12	NA	111316152	111318178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_111316269_111317592
ENSMUSG00000032500.11_6	chr9	+	1986	3	NIC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	28973	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	11	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATCTGCCTTGTTCAAT	7219	False	NA	NA	False	AATAAA	-17	NA	111297121	111318183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_111298384_111311685_111311819_111317592
ENSMUSG00000032501.10_0	chr15	+	3637	3	FSM	ENSMUSG00000032501.10	ENSMUST00000067543.8	4330	3	137	556	137	-556	multi-exon	FALSE	canonical	3	22	junction_1	4.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAATACAGTGAGTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	59520335	59528392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_59521372_59523327_59523621_59526084
ENSMUSG00000032501.10_3	chr15	+	1699	1	ISM	ENSMUSG00000032501.10	ENSMUST00000067543.8	4330	3	6495	556	6192	-556	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAATACAGTGAGTTTC	800	False	NA	NA	False	AATAAA	-12	NA	59526693	59528392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_59526700_59528400
ENSMUSG00000032501.10_4	chr15	+	2597	2	ISM	ENSMUSG00000032501.10	ENSMUST00000067543.8	4330	3	3133	556	2830	-556	3prime_fragment	FALSE	canonical	3	31	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAATACAGTGAGTTTC	341	False	NA	NA	False	AATAAA	-12	NA	59523331	59528392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_59523621_59526084
ENSMUSG00000032504.16_1	chr9	-	3214	18	NNC	ENSMUSG00000032504.16	novel	5951	18	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	77.3019514339821	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTGTTATGTTTTGTC	NA	False	NA	-9	True	AATAAA	-16	NA	113537310	113483540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_113484176_113485084_113485276_113486144_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514492_113516692_113516794_113518642_113518797_113520520_113520649_113526573_113526644_113529036_113529092_113536966
ENSMUSG00000032504.16_2	chr9	-	3203	18	FSM	ENSMUSG00000032504.16	ENSMUST00000035086.13	5951	18	19	2729	4	-1	multi-exon	FALSE	canonical	3	268	junction_2	35.4147936949624	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTGTTATGTTTTGTC	NA	False	NA	-9	True	AATAAA	-16	NA	113537308	113483540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_113484176_113485084_113485276_113486153_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514492_113516692_113516794_113518642_113518797_113520520_113520649_113526573_113526644_113529036_113529092_113536966
ENSMUSG00000032504.16_8	chr9	-	2571	1	ISM	ENSMUSG00000032504.16	ENSMUST00000035086.13	5951	18	53944	1	2979	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCTGTGGAGTATGAATT	NA	False	NA	-10	True	AATAAA	-16	NA	113483383	113480812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_113480800_113483400
ENSMUSG00000032507.16_1	chr9	-	2103	15	FSM	ENSMUSG00000032507.16	ENSMUST00000035090.14	3464	15	37	1324	2	6	multi-exon	FALSE	canonical	3	21	junction_13	8.10139821643304	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAGAATGGATGTGGTTT	NA	False	NA	-6	True	AGTAAA	-17	NA	113855792	113807098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113855760
ENSMUSG00000032507.16_13	chr9	-	2248	15	NIC	ENSMUSG00000032507.16	novel	3464	15	NA	NA	-2	-13	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	13.9395561080615	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAACAAACAGATGCA	NA	False	NA	-25	True	NA	NA	NA	113875261	113807117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_113808009_113808525_113808739_113813052_113813185_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113875140
ENSMUSG00000032507.16_15	chr9	-	1969	13	NIC	ENSMUSG00000032507.16	novel	3464	15	NA	NA	-10	-13	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	12.9494208364699	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAACAAACAGATGCA	NA	False	NA	-25	True	NA	NA	NA	113855807	113807117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113847056_113847119_113855760
ENSMUSG00000032507.16_5	chr9	-	2184	15	NIC	ENSMUSG00000032507.16	novel	3464	15	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	3	6	junction_14	11.0628999408853	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGATGCATGTAGAATG	NA	False	NA	-16	True	AGTAAA	-7	NA	113875263	113807108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113875140
ENSMUSG00000032508.9_0	chr9	-	1937	6	FSM	ENSMUSG00000032508.9	ENSMUST00000035092.7	1960	6	13	10	13	2	multi-exon	FALSE	canonical	3	36	junction_3	6.61513416341649	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGTACTTGTGACTG	NA	False	NA	-9	True	AATAAA	-16	NA	119169094	119165009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_119165966_119166400_119166577_119166819_119166912_119167071_119167253_119167641_119167777_119168697
ENSMUSG00000032511.18_1	chr9	-	4829	12	ISM	ENSMUSG00000032511.18	ENSMUST00000117911.8	8453	28	21	47515	21	31612	5prime_fragment	FALSE	canonical	0	0	junction_1	1.08330684434663	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATACCTCCTCTGTATGAC	NA	False	NA	NA	False	AATGAA	-22	NA	119408061	119359990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_119363101_119363620_119363801_119364878_119365077_119365505_119365648_119366687_119366752_119368589_119368821_119372389_119372482_119379671_119379801_119381051_119381142_119389327_119389447_119391417_119391745_119407914
ENSMUSG00000032512.8_0	chr9	+	3820	19	FSM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	18	7	1	-7	multi-exon	FALSE	canonical	3	235	junction_17	23.7904950415284	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACACTTCAGTGTGCTG	NA	False	NA	22	True	AATAAA	-10	NA	119723961	119755645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
ENSMUSG00000032512.8_37	chr9	+	1559	1	ISM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	30145	5	3725	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTTCAGTGTGCTGGA	NA	False	NA	24	True	AATAAA	-12	NA	119754088	119755647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_119754100_119755600
ENSMUSG00000032513.9_0	chr9	-	2535	9	FSM	ENSMUSG00000032513.9	ENSMUST00000035099.9	3906	9	34	1337	19	-1337	multi-exon	FALSE	canonical	3	103	junction_5	11.0898320546346	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAGTGTTTGTAACTAA	NA	False	NA	-6	True	AATAAA	-13	NA	119766597	119755659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_119757103_119757292_119757446_119757878_119758030_119758616_119758828_119759038_119759170_119759285_119759373_119761686_119761891_119762327_119762409_119766523
ENSMUSG00000032514.12_1	chr9	+	4118	9	ISM	ENSMUSG00000032514.12	ENSMUST00000159128.8	4041	26	8	17298	7	-12921	5prime_fragment	FALSE	canonical	0	0	junction_8	1.72753437013566	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAATTAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	119766708	119778821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_119766817_119768232_119768363_119769481_119769593_119770198_119770366_119771637_119771761_119772882_119773041_119774010_119774096_119774548_119774648_119775684
ENSMUSG00000032515.9_0	chr9	-	2919	5	NIC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	4.71036092035419	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGTCTTCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	119813752	119800230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813699
ENSMUSG00000032515.9_2	chr9	-	1259	1	ISM	ENSMUSG00000032515.9	ENSMUST00000035101.9	2906	5	12020	2	4912	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGTCTTCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	119801489	119800230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_119800200_119801500
ENSMUSG00000032515.9_3	chr9	-	3132	5	NIC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	-105	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_4	8.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGTCTTCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	119812950	119800230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119812684
ENSMUSG00000032515.9_4	chr9	-	3086	5	FSM	ENSMUSG00000032515.9	ENSMUST00000035101.9	2906	5	-182	2	33	0	multi-exon	FALSE	canonical	1	1	junction_4	11.4972822875669	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGTCTTCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	119813691	119800230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813471
ENSMUSG00000032515.9_5	chr9	-	2207	2	ISM	ENSMUSG00000032515.9	ENSMUST00000215916.2	2956	4	3812	0	3812	0	3prime_fragment	FALSE	canonical	3	29	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGTCTTCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	119802589	119800230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_119802278_119802429
ENSMUSG00000032515.9_8	chr9	-	2814	4	FSM	ENSMUSG00000032515.9	ENSMUST00000215916.2	2956	4	144	-2	144	0	multi-exon	FALSE	canonical	3	25	junction_2	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	2	True	AATAAA	-17	NA	119806257	119800228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067
ENSMUSG00000032517.17_0	chr9	+	2442	6	FSM	ENSMUSG00000032517.17	ENSMUST00000174193.8	2609	6	2	165	2	-165	multi-exon	FALSE	canonical	2	7	junction_4	5.38144961882948	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAACCTATCTGGAGATT	NA	False	NA	11	True	AATAAA	-13	NA	119978809	120010385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_120002216_120002442_120008392_120008472_120008590
ENSMUSG00000032517.17_2	chr9	+	3280	4	FSM	ENSMUSG00000032517.17	ENSMUST00000093773.8	3286	4	2	4	2	-4	multi-exon	FALSE	canonical	3	11	junction_3	4.18993502999218	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAGAATGTTTATTTG	NA	False	NA	10	True	NA	NA	NA	119978809	120005153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_120002216
ENSMUSG00000032517.17_5	chr9	+	780	4	FSM	ENSMUSG00000032517.17	ENSMUST00000068698.15	1536	4	37	719	2	521	multi-exon	FALSE	canonical	3	15	junction_3	2.44948974278318	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGACCTGGCGTGGCTTCT	NA	False	NA	3	True	NA	NA	NA	119978809	119997725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_119997288
ENSMUSG00000032518.7_0	chr9	+	1025	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	103	810	3	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	2025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956857	119960625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUSG00000032518.7_20	chr9	+	982	6	FSM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	617	0	-345	0	multi-exon	FALSE	canonical	3	2998	junction_2	1090.74407630755	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119957526	119960625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUSG00000032518.7_24	chr9	+	281	2	ISM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	3201	0	927	0	3prime_fragment	FALSE	canonical	3	5877	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119960110	119960625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_119960232_119960465
ENSMUSG00000032518.7_33	chr9	+	797	5	ISM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	1337	0	375	0	3prime_fragment	FALSE	canonical	3	2998	junction_1	1134.17481015935	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119958246	119960625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUSG00000032518.7_34	chr9	+	620	4	ISM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	2355	0	81	0	3prime_fragment	FALSE	canonical	3	5375	junction_1	214.17905281952	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119959264	119960625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUSG00000032519.12_0	chr9	+	1582	7	FSM	ENSMUSG00000032519.12	ENSMUST00000035106.12	1791	7	22	187	-9	-187	multi-exon	FALSE	canonical	3	111	junction_3	17.3173002771474	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGACATCACCAGG	1782	False	NA	-3	True	AATAAA	-22	NA	119939461	119953383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951159_119951327_119952707
ENSMUSG00000032519.12_1	chr9	+	1710	8	NIC	ENSMUSG00000032519.12	novel	961	8	NA	NA	-14	-187	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	64.126469430592	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGACATCACCAGG	1777	False	NA	-3	True	AATAAA	-22	NA	119939456	119953383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949072_119949322_119949503_119949738_119949914_119951159_119951327_119952707
ENSMUSG00000032519.12_16	chr9	+	1498	4	ISM	ENSMUSG00000032519.12	ENSMUST00000035106.12	1791	7	9583	187	4968	-187	3prime_fragment	FALSE	canonical	3	154	junction_3	4.10960933531265	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGACATCACCAGG	NA	False	NA	-3	True	AATAAA	-22	NA	119949022	119953383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_119949503_119949738_119949914_119951159_119951327_119952707
ENSMUSG00000032519.12_3	chr9	+	1956	7	NIC	ENSMUSG00000032519.12	novel	961	8	NA	NA	-9	-187	intron_retention	FALSE	canonical	3	13	junction_3	53.5184288093571	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGACATCACCAGG	1782	False	NA	-3	True	AATAAA	-22	NA	119939461	119953383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949503_119949738_119949914_119951159_119951327_119952707
ENSMUSG00000032519.12_6	chr9	+	4314	6	NIC	ENSMUSG00000032519.12	novel	1791	7	NA	NA	9	-187	intron_retention	FALSE	canonical	3	152	junction_2	4.4	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGACATCACCAGG	1769	False	NA	-3	True	AATAAA	-22	NA	119939448	119953383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_119939639_119945567_119945690_119946518_119949503_119949738_119949914_119951159_119951327_119952707
ENSMUSG00000032525.16_10	chr9	+	5564	17	FSM	ENSMUSG00000032525.16	ENSMUST00000035112.13	7022	17	37	1421	-2	565	multi-exon	FALSE	canonical	3	17	junction_5	11.4065496535981	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTAGTGTGGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	121548278	121584488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121548362_121548524_121548612_121556381_121556457_121557643_121557752_121558701_121558747_121560543_121560632_121570187_121570218_121570663_121570810_121571630_121571854_121573054_121573211_121574966_121575055_121575510_121575657_121577096_121579953_121580732_121580829_121581472_121581530_121582056_121582159_121583310
ENSMUSG00000032525.16_3	chr9	+	4606	18	NIC	ENSMUSG00000032525.16	novel	7022	17	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_6	11.909113720986	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCAGTCTGTTGTGTTTT	NA	False	NA	2	True	AAGAAA	-5	NA	121548238	121583462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_121548362_121548524_121548612_121556381_121556457_121557643_121557752_121558701_121558747_121559062_121559091_121560543_121560632_121570187_121570218_121570663_121570810_121571630_121571854_121573054_121573211_121574966_121575055_121575510_121575657_121577096_121579953_121580732_121580829_121581472_121581530_121582056_121582159_121583310
ENSMUSG00000032525.16_32	chr9	+	4092	5	ISM	ENSMUSG00000032525.16	ENSMUST00000035112.13	7022	17	30464	9	-775	-9	3prime_fragment	FALSE	canonical	3	27	junction_3	12.5399362039845	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCCTGCCTGCTTGGTCT	NA	False	NA	0	True	AATACA	-10	NA	121578705	121585900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_121579953_121580732_121580829_121581472_121581530_121582056_121582159_121583310
ENSMUSG00000032525.16_33	chr9	+	5085	5	NNC	ENSMUSG00000032525.16	novel	539	6	NA	NA	-1764	-8	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	17.9495821678389	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCCTGCCTGCTTGGTCTT	NA	False	NA	1	True	AATACA	-11	NA	121577716	121585901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_121579953_121580732_121580829_121581472_121581530_121582053_121582159_121583310
ENSMUSG00000032525.16_38	chr9	+	2172	1	ISM	ENSMUSG00000032525.16	ENSMUST00000035112.13	7022	17	35489	7	2138	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGCCTGCTTGGTCTTT	NA	False	NA	2	True	AATACA	-12	NA	121583730	121585902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_121583700_121585900
ENSMUSG00000032526.12_0	chr9	+	532	3	FSM	ENSMUSG00000032526.12	ENSMUST00000035113.11	577	3	45	0	2	0	multi-exon	FALSE	canonical	3	377	junction_1	21	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	False	NA	11	True	AATAAA	-16	NA	121539439	121541987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121539538_121539704_121539782_121541630
ENSMUSG00000032526.12_1	chr9	+	2380	2	FSM	ENSMUSG00000032526.12	ENSMUST00000215966.2	2316	2	27	-91	1	-2	multi-exon	FALSE	canonical	3	377	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCAGTGTCCCATGTCAA	NA	False	NA	9	True	AATAAA	-14	NA	121539438	121541985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121539538_121539704
ENSMUSG00000032526.12_2	chr9	+	692	2	FSM	ENSMUSG00000032526.12	ENSMUST00000214535.2	1175	2	12	471	5	-4	multi-exon	FALSE	canonical	3	419	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTCAGTGTCCCATGTC	NA	False	NA	7	True	AATAAA	-12	NA	121539442	121541983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121539782_121541630
ENSMUSG00000032526.12_3	chr9	+	1759	1	FSM	ENSMUSG00000032526.12	ENSMUST00000217579.2	2354	1	638	-43	638	35	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCATTGTCAACAATAGTG	NA	False	NA	44	True	NA	NA	NA	121540170	121541929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121540200_121541900
ENSMUSG00000032526.12_4	chr9	+	546	3	FSM	ENSMUSG00000032526.12	ENSMUST00000215104.2	315	3	-68	-163	3	-4	multi-exon	FALSE	canonical	2	7	junction_1	206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTCAGTGTCCCATGTC	NA	False	NA	7	True	AATAAA	-12	NA	121539397	121541983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121539514_121539704_121539782_121541630
ENSMUSG00000032527.14_0	chr9	-	2288	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	21	11	0	-11	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAACATACTTGGGTGT	NA	False	NA	-11	True	NA	NA	NA	100916930	100864095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
ENSMUSG00000032527.14_1	chr9	-	1812	11	ISM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	11675	6	11627	-6	3prime_fragment	FALSE	canonical	3	73	junction_6	14.6027394690174	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATACTTGGGTGTTGTTT	NA	False	NA	-6	True	NA	NA	NA	100905276	100864090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188
ENSMUSG00000032527.14_4	chr9	-	1357	6	ISM	ENSMUSG00000032527.14	ENSMUST00000149322.8	2188	14	46908	15	-2360	-15	3prime_fragment	FALSE	canonical	3	76	junction_5	12.2539789456323	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTAATTCAACATACTTGG	NA	False	NA	-15	True	NA	NA	NA	100870022	100864099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833
ENSMUSG00000032531.16_10	chr9	+	4183	10	FSM	ENSMUSG00000032531.16	ENSMUST00000035121.14	4328	10	136	9	136	-4	multi-exon	FALSE	canonical	3	168	junction_1	19.0852538254079	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGAGATGTCTGTCTGT	NA	False	NA	8	True	AATAAA	-11	NA	102595002	102610608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_102595102_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
ENSMUSG00000032531.16_18	chr9	+	3743	9	ISM	ENSMUSG00000032531.16	ENSMUST00000130602.2	3475	10	137	7	137	-2	3prime_fragment	FALSE	canonical	3	197	junction_7	12.9204295594225	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGAGATGTCTGTCTGTCT	NA	False	NA	10	True	AATAAA	-13	NA	102597622	102610610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
ENSMUSG00000032531.16_19	chr9	+	4137	10	NIC	ENSMUSG00000032531.16	novel	3475	10	NA	NA	-7	-4	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	65.1808500241946	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGAGATGTCTGTCTGT	NA	False	NA	8	True	AATAAA	-11	NA	102595676	102610608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_102595730_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
ENSMUSG00000032531.16_26	chr9	+	3080	8	FSM	ENSMUSG00000032531.16	ENSMUST00000138224.2	4332	8	1245	7	1245	-2	multi-exon	FALSE	canonical	3	197	junction_6	13.3523673663405	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGAGATGTCTGTCTGTCT	NA	False	NA	10	True	AATAAA	-13	NA	102600977	102610610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
ENSMUSG00000032531.16_35	chr9	+	1389	1	ISM	ENSMUSG00000032531.16	ENSMUST00000153965.8	4222	11	15221	2	1292	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGAGATGTCTGTCTGTCT	NA	False	NA	10	True	AATAAA	-13	NA	102609221	102610610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_102609200_102610600
ENSMUSG00000032531.16_5	chr9	+	4244	10	NIC	ENSMUSG00000032531.16	novel	3475	10	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	65.4896090146283	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTCTGTCTGTCTGTCT	NA	False	NA	14	True	AATAAA	-17	NA	102594487	102610614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_102594642_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
ENSMUSG00000032534.19_0	chr9	-	2094	13	FSM	ENSMUSG00000032534.19	ENSMUST00000162655.9	4180	13	-12	2098	-12	1	multi-exon	FALSE	canonical	3	75	junction_12	13.3260396717604	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACATGAATGTTTATTAC	NA	False	NA	-9	True	AATAAA	-18	NA	102503745	102463884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496188_102496890_102496960_102503461
ENSMUSG00000032534.19_2	chr9	-	1910	12	ISM	ENSMUSG00000032534.19	ENSMUST00000216281.2	1791	15	6220	-267	-913	-9	3prime_fragment	FALSE	canonical	3	96	junction_4	9.43266699356922	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAACTAGAGTAACTACAG	NA	False	NA	90	True	AATAAA	-18	NA	102496960	102463785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496188_102496890
ENSMUSG00000032534.19_8	chr9	-	1971	12	NIC	ENSMUSG00000032534.19	novel	4180	13	NA	NA	-12	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	34.0354700737407	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACATGAATGTTTATTAC	NA	False	NA	-9	True	AATAAA	-18	NA	102503745	102463884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102492473_102492570_102496009_102496188_102496890_102496960_102503461
ENSMUSG00000032536.13_0	chr9	+	5190	17	NNC	ENSMUSG00000032536.13	novel	5363	18	NA	NA	-9	-4	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_15	49.7895179103996	157	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGAAAGCTTTTGTCTTTT	NA	False	NA	5	True	AATAAA	-13	NA	121126590	121303978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289581_121298050_121298154_121301302
ENSMUSG00000032536.13_1	chr9	+	4500	15	ISM	ENSMUSG00000032536.13	ENSMUST00000238988.2	3353	17	13	10396	-9	-7	5prime_fragment	FALSE	canonical	3	209	junction_1	22.8924949826491	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAACTTTTAGGTCCTA	NA	False	NA	2	True	ATTAAA	-12	NA	121126590	121291669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424
ENSMUSG00000032536.13_12	chr9	+	5391	17	NIC	ENSMUSG00000032536.13	novel	5363	18	NA	NA	-9	-4	combination_of_known_splicesites	FALSE	canonical	3	22	junction_15	60.0020507462037	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGAAAGCTTTTGTCTTTT	NA	False	NA	5	True	AATAAA	-13	NA	121126590	121303978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289782_121298050_121298154_121301302
ENSMUSG00000032536.13_15	chr9	+	3541	14	FSM	ENSMUSG00000032536.13	ENSMUST00000211439.2	3533	14	-9	1	-9	-1	multi-exon	TRUE	canonical	3	209	junction_1	23.6693195168457	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCCGCCTTTCTTTTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	121126590	121284947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344
ENSMUSG00000032536.13_4	chr9	+	5253	17	FSM	ENSMUSG00000032536.13	ENSMUST00000238988.2	3353	17	13	-1913	-9	-4	multi-exon	FALSE	canonical	3	114	junction_15	40.0713718725726	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGAAAGCTTTTGTCTTTT	NA	False	NA	5	True	AATAAA	-13	NA	121126590	121303978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289644_121298050_121298154_121301302
ENSMUSG00000032536.13_85	chr9	+	1819	1	ISM	ENSMUSG00000032536.13	ENSMUST00000210798.3	5363	18	175583	3	18799	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAAGCTTTTGTCTTTTT	1449	False	NA	6	True	AATAAA	-14	NA	121302160	121303979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_121302200_121304000
ENSMUSG00000032540.17_0	chr9	+	2991	7	FSM	ENSMUSG00000032540.17	ENSMUST00000156520.8	3157	7	162	4	-19	-4	multi-exon	FALSE	canonical	3	74	junction_5	12.9925192151313	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACCCGTGGGTGAGCTGT	NA	False	NA	0	True	AATAAA	-13	NA	122180834	122210585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
ENSMUSG00000032540.17_2	chr9	+	2532	5	FSM	ENSMUSG00000032540.17	ENSMUST00000111497.5	2576	5	40	4	-19	-4	multi-exon	FALSE	canonical	2	13	junction_1	33.7073804974519	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACCCGTGGGTGAGCTGT	NA	False	NA	0	True	AATAAA	-13	NA	122180834	122210585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_122180905_122204970_122205126_122206923_122207036_122207886_122208074_122208577
ENSMUSG00000032540.17_3	chr9	+	2894	6	NIC	ENSMUSG00000032540.17	novel	3157	7	NA	NA	-8	-4	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	35.2363448728724	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACCCGTGGGTGAGCTGT	NA	False	NA	0	True	AATAAA	-13	NA	122180845	122210585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_122180905_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
ENSMUSG00000032540.17_6	chr9	+	1224	1	ISM	ENSMUSG00000032540.17	ENSMUST00000156520.8	3157	7	28692	1	16647	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGTGGGTGAGCTGTGTG	NA	False	NA	3	True	AATAAA	-16	NA	122209364	122210588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_122209400_122210600
ENSMUSG00000032547.13_0	chr9	+	2846	15	FSM	ENSMUSG00000032547.13	ENSMUST00000035142.8	2852	15	-46	52	9	-52	multi-exon	TRUE	canonical	3	312	junction_7	39.7877019252155	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAACACTTGAAAAATTAA	NA	False	NA	0	True	TATAAA	-11	NA	102712124	102785100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_102712439_102739072_102739195_102744753_102744854_102746472_102746608_102748926_102748981_102752937_102753083_102758852_102758954_102763201_102763328_102765668_102765756_102768414_102768485_102774400_102774534_102775657_102775768_102775889_102776050_102783235_102783373_102784048
ENSMUSG00000032547.13_1	chr9	+	2856	15	FSM	ENSMUSG00000032547.13	ENSMUST00000175883.8	2505	15	9	-360	9	-51	multi-exon	FALSE	non_canonical	0	0	junction_7	106.419462697461	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACACTTGAAAAATTAAA	NA	False	NA	1	True	TATAAA	-12	NA	102712124	102785101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_102712439_102739072_102739195_102744753_102744854_102746472_102746608_102748926_102748981_102752937_102753083_102758852_102758954_102763192_102763328_102765668_102765756_102768414_102768485_102774400_102774534_102775657_102775768_102775889_102776050_102783235_102783373_102784048
ENSMUSG00000032548.15_2	chr9	+	4116	14	FSM	ENSMUSG00000032548.15	ENSMUST00000035148.13	7122	14	403	2603	-94	-2603	multi-exon	FALSE	canonical	2	4	junction_10	4.55472964402691	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTGGTTGTAAATTTGT	NA	False	NA	NA	False	NA	NA	NA	102885603	102965047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_102885915_102923883_102924022_102927342_102927506_102945023_102945252_102946343_102946443_102947426_102947564_102949757_102949834_102950346_102950512_102951574_102951765_102954122_102954289_102956647_102956812_102959527_102959593_102962016_102962141_102962957
ENSMUSG00000032548.15_3	chr9	+	3499	11	ISM	ENSMUSG00000032548.15	ENSMUST00000035148.13	7122	14	59829	2602	59332	-2602	3prime_fragment	FALSE	canonical	2	4	junction_7	3.9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGGTTGTAAATTTGTG	NA	False	NA	NA	False	NA	NA	NA	102945029	102965048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_102945252_102946343_102946443_102947426_102947564_102949757_102949834_102950346_102950512_102951574_102951765_102954122_102954289_102956647_102956812_102959527_102959593_102962016_102962141_102962957
ENSMUSG00000032549.8_0	chr9	+	5021	8	FSM	ENSMUSG00000032549.8	ENSMUST00000035155.8	5007	8	-21	7	-1	-7	multi-exon	FALSE	canonical	3	16	junction_5	2.35606035749581	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAAAGCTCCTTGTTGAC	212	False	NA	3	True	AATAAA	-16	NA	102988984	103062468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_102989426_103017580_103017640_103038018_103038073_103038262_103038369_103039740_103039853_103041008_103041103_103044304_103044372_103058380
ENSMUSG00000032549.8_4	chr9	+	2548	1	ISM	ENSMUSG00000032549.8	ENSMUST00000035155.8	5007	8	70915	7	70915	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAAAGCTCCTTGTTGAC	9671	False	NA	3	True	AATAAA	-16	NA	103059920	103062468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_103059900_103062500
ENSMUSG00000032551.8_1	chr9	-	898	3	FSM	ENSMUSG00000032551.8	ENSMUST00000035154.4	3361	3	8	2455	8	-9	multi-exon	FALSE	canonical	3	36	junction_2	10	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAGATCTGTCTTAGT	NA	False	NA	NA	False	ATTAAA	-18	NA	122780057	122776608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_122777174_122777989_122778135_122779869
ENSMUSG00000032553.15_5	chr9	-	1767	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	26	-59	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	97.1596624119289	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTGTGTTCTCATTGC	NA	False	NA	-3	True	TTTAAA	-33	NA	103079302	103066347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_103066696_103066841_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ENSMUSG00000032554.16_0	chr9	-	2315	17	FSM	ENSMUSG00000032554.16	ENSMUST00000035158.16	2571	17	174	82	0	-82	multi-exon	FALSE	canonical	3	17	junction_12	9.88982273602515	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCCCAAACTCCATTC	NA	False	NA	-9	True	AATAAA	-17	NA	103107469	103086075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_103086278_103087693_103087878_103089010_103089196_103092391_103092457_103093012_103093143_103094561_103094733_103096421_103096455_103097000_103097092_103098091_103098244_103099249_103099428_103100133_103100313_103100782_103100839_103102241_103102375_103103159_103103337_103104036_103104146_103105094_103105268_103107372
ENSMUSG00000032554.16_6	chr9	-	2141	16	ISM	ENSMUSG00000032554.16	ENSMUST00000035158.16	2571	17	2448	87	446	-87	3prime_fragment	FALSE	canonical	3	17	junction_12	9.70543948286504	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTATATTTCCCAAACTC	NA	False	NA	-14	True	AATAAA	-12	NA	103105195	103086080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_103086278_103087693_103087878_103089010_103089196_103092391_103092457_103093012_103093143_103094561_103094733_103096421_103096455_103097000_103097092_103098091_103098244_103099249_103099428_103100133_103100313_103100782_103100839_103102241_103102375_103103159_103103337_103104036_103104146_103105094
ENSMUSG00000032555.11_0	chr9	+	5213	28	FSM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	-2	13	-2	-13	multi-exon	FALSE	canonical	3	379	junction_13	76.5309229485215	882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGCAACTTAAACTGTATT	951	False	NA	1	True	AATAAA	-6	NA	103182411	103227614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_103182571_103183295_103183387_103185943_103186079_103187015_103187160_103188692_103188875_103189970_103190168_103192252_103192430_103195185_103195353_103197367_103197532_103197672_103197921_103200466_103200826_103201525_103201699_103202840_103203053_103205605_103205893_103209883_103210055_103210143_103210254_103211254_103211379_103213010_103213158_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
ENSMUSG00000032555.11_19	chr9	+	7766	27	NIC	ENSMUSG00000032555.11	novel	5224	28	NA	NA	3	-8	intron_retention	FALSE	canonical	3	480	junction_14	65.9353839153986	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTAAACTGTATTGATTT	956	False	NA	6	True	AATAAA	-11	NA	103182416	103227619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_103182571_103183295_103183387_103185943_103186079_103187015_103187160_103188692_103188875_103189970_103190168_103192252_103192430_103195185_103195353_103197367_103197532_103197672_103197921_103200466_103200826_103201525_103201699_103202840_103205893_103209883_103210055_103210143_103210254_103211254_103211379_103213010_103213158_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
ENSMUSG00000032557.14_0	chr9	-	1476	12	FSM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	25	903	25	148	multi-exon	FALSE	canonical	3	388	junction_1	40.2171790110061	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCACGGAGTTGTTATG	NA	False	NA	-23	True	AATAAA	-29	NA	103940308	103924700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
ENSMUSG00000032557.14_1	chr9	-	2247	14	NNC	ENSMUSG00000032557.14	novel	2404	12	NA	NA	22	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	152.222586945339	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAATGCACCTGCTTTGAG	NA	False	NA	-20	True	AATAAA	-11	NA	103940311	103923804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_103924188_103924254_103924354_103924414_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
ENSMUSG00000032558.20_0	chr9	+	5619	27	FSM	ENSMUSG00000032558.20	ENSMUST00000035167.15	5899	27	196	84	-16	-84	multi-exon	TRUE	canonical	3	11	junction_1	5.77333187568024	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCATTTTGCAGTCTGT	NA	False	NA	-70	True	AATAAA	-16	NA	103879940	103920933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_103880361_103881912_103882039_103882654_103882806_103885319_103885473_103886338_103886473_103888799_103888961_103892523_103892681_103893278_103893354_103895301_103895476_103897924_103898029_103898454_103898570_103899860_103900005_103900618_103900717_103901780_103901884_103903100_103903184_103907160_103907300_103909089_103909255_103910526_103910622_103911576_103911700_103912904_103913092_103913237_103913480_103914530_103914607_103915633_103915762_103916532_103916774_103917820_103917947_103918337_103918454_103919150
ENSMUSG00000032558.20_10	chr9	+	2386	5	ISM	ENSMUSG00000032558.20	ENSMUST00000035167.15	5899	27	35893	88	-2183	-88	3prime_fragment	FALSE	canonical	3	27	junction_2	2.12132034355964	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCTCTCATTTTGCAGT	NA	False	NA	-74	True	AATAAA	-12	NA	103915637	103920929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_103915762_103916532_103916774_103917820_103917947_103918337_103918454_103919150
ENSMUSG00000032558.20_11	chr9	+	1728	1	ISM	ENSMUSG00000032558.20	ENSMUST00000035167.15	5899	27	39461	84	1385	-84	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCATTTTGCAGTCTGT	NA	False	NA	-70	True	AATAAA	-16	NA	103919205	103920933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_103919200_103920900
ENSMUSG00000032558.20_6	chr9	+	4631	22	ISM	ENSMUSG00000032558.20	ENSMUST00000035167.15	5899	27	9055	88	8834	-88	3prime_fragment	FALSE	canonical	3	11	junction_12	5.93196498782487	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCTCTCATTTTGCAGT	NA	False	NA	-74	True	AATAAA	-12	NA	103888799	103920929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_103888961_103892523_103892681_103893278_103893354_103895301_103895476_103897924_103898029_103898454_103898570_103899860_103900005_103900618_103900717_103901780_103901884_103903100_103903184_103907160_103907300_103909089_103909255_103910526_103910622_103911576_103911700_103912904_103913092_103913237_103913480_103914530_103914607_103915633_103915762_103916532_103916774_103917820_103917947_103918337_103918454_103919150
ENSMUSG00000032558.20_7	chr9	+	3073	8	ISM	ENSMUSG00000032558.20	ENSMUST00000035167.15	5899	27	32982	88	-320	-88	3prime_fragment	FALSE	canonical	3	24	junction_1	2.71052370871575	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCTCTCATTTTGCAGT	NA	False	NA	-74	True	AATAAA	-12	NA	103912726	103920929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_103913092_103913237_103913480_103914530_103914607_103915633_103915762_103916532_103916774_103917820_103917947_103918337_103918454_103919150
ENSMUSG00000032560.15_3	chr9	-	7683	56	FSM	ENSMUSG00000032560.15	ENSMUST00000035170.13	8012	56	7	322	7	-322	multi-exon	FALSE	canonical	3	149	junction_37	31.3582656798217	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGATATGTATGTTCTG	NA	False	NA	-6	True	AATAAA	-20	NA	104140122	104028802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_104029623_104034012_104034113_104037677_104037822_104039471_104039613_104039853_104040034_104042158_104042333_104042715_104042759_104042892_104043063_104044169_104044283_104044612_104044688_104047913_104048014_104049719_104049812_104051547_104051726_104052845_104052963_104053856_104053971_104056000_104056169_104057267_104057448_104058197_104058318_104059226_104059302_104059703_104059889_104061781_104061918_104063909_104063989_104064746_104064863_104066242_104066445_104067519_104067675_104069304_104069351_104069812_104069968_104073221_104073307_104074357_104074561_104075828_104075934_104077635_104077738_104079086_104079150_104080370_104080531_104080613_104080718_104084951_104085106_104086503_104086587_104089959_104090104_104091015_104091112_104091321_104091398_104092844_104092967_104094910_104094968_104095725_104095882_104097069_104097178_104098602_104098703_104105621_104105792_104105879_104105960_104106073_104106241_104107208_104107301_104107839_104107936_104108029_104108237_104110732_104110934_104114334_104114377_104114775_104114926_104115663_104115740_104123958_104124040_104139897
ENSMUSG00000032560.15_8	chr9	-	4406	29	ISM	ENSMUSG00000032560.15	ENSMUST00000186788.7	6747	56	49528	-715	3184	-320	3prime_fragment	FALSE	canonical	3	192	junction_26	24.8818381022572	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGATATGTATGTTCTGTA	NA	False	NA	-4	True	AATAAA	-22	NA	104074498	104028800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_104029623_104034012_104034113_104037677_104037822_104039471_104039613_104039853_104040034_104042158_104042333_104042715_104042759_104042892_104043063_104044169_104044283_104044612_104044688_104047913_104048014_104049719_104049812_104051547_104051726_104052845_104052963_104053856_104053971_104056000_104056169_104057267_104057448_104058197_104058318_104059226_104059302_104059703_104059889_104061781_104061918_104063909_104063989_104064746_104064863_104066242_104066445_104067519_104067675_104069304_104069351_104069812_104069968_104073221_104073307_104074357
ENSMUSG00000032561.16_0	chr9	-	2470	1	Genic_Genomic	ENSMUSG00000032561.16	novel	NA	NA	NA	NA	10856	351	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTACTTTGTACTTGCT	NA	False	NA	NA	False	NA	NA	NA	104167568	104165098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_-_104165100_104167600
ENSMUSG00000032561.16_1	chr9	-	4464	11	FSM	ENSMUSG00000032561.16	ENSMUST00000062723.14	4483	11	21	-2	0	2	multi-exon	TRUE	canonical	0	0	junction_6	1.79164728671689	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTTCATTTGTAAGCC	NA	False	NA	NA	False	AATAAA	-11	NA	104214906	104165447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_104168729_104178014_104178185_104184083_104184188_104186608_104186692_104191506_104191640_104193424_104193518_104197172_104197272_104201250_104201404_104201841_104201929_104204079_104204176_104214741
ENSMUSG00000032561.16_3	chr9	-	3895	6	ISM	ENSMUSG00000032561.16	ENSMUST00000062723.14	4483	11	21301	76	-15202	-76	3prime_fragment	FALSE	canonical	1	1	junction_5	1.67332005306815	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAACACAACAGGTCACC	NA	False	NA	NA	False	NA	NA	NA	104193626	104165525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_104168729_104178014_104178185_104184083_104184188_104186608_104186692_104191506_104191640_104193424
ENSMUSG00000032562.14_0	chr9	-	2175	9	FSM	ENSMUSG00000032562.14	ENSMUST00000055704.12	2215	9	23	17	-1	-17	multi-exon	FALSE	canonical	3	1026	junction_1	123.439193026364	1769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAACACCAAAAACTT	4793	False	NA	-17	True	AATAAA	-7	NA	107512543	107491340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107492298_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
ENSMUSG00000032562.14_1	chr9	-	1792	9	FSM	ENSMUSG00000032562.14	ENSMUST00000192615.6	1777	9	-32	17	-1	-17	multi-exon	FALSE	canonical	3	246	junction_1	364.681860496241	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAACACCAAAAACTT	4793	False	NA	-17	True	AATAAA	-7	NA	107512543	107491340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107491915_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
ENSMUSG00000032563.17_0	chr9	+	1510	10	FSM	ENSMUSG00000032563.17	ENSMUST00000035177.15	3972	10	36	2426	5	-4	multi-exon	FALSE	canonical	3	494	junction_1	31.6489229040682	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCTGGTTGTGAAACAG	NA	False	NA	16	True	ATTAAA	-13	NA	104930473	104954661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
ENSMUSG00000032563.17_3	chr9	+	2271	9	FSM	ENSMUSG00000032563.17	ENSMUST00000149243.8	2309	9	31	7	0	-7	multi-exon	FALSE	canonical	3	494	junction_1	31.1879383736726	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAATTGTTATGTCCTT	NA	False	NA	NA	False	AATATA	-14	NA	104930468	104953664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360
ENSMUSG00000032565.10_0	chr9	-	1592	3	FSM	ENSMUSG00000032565.10	ENSMUST00000035179.9	1631	3	27	12	-17	-12	multi-exon	FALSE	canonical	3	25	junction_1	2	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTAAAAAAAAGCAGCTGT	NA	False	NA	NA	False	AGTAAA	-6	NA	105008996	105006542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_105007710_105008491_105008762_105008841
ENSMUSG00000032565.10_1	chr9	-	1442	2	FSM	ENSMUSG00000032565.10	ENSMUST00000190375.2	1326	2	217	-333	210	-8	multi-exon	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGCAGCTGTCTGG	NA	False	NA	NA	False	AGTAAA	-10	NA	105008762	105006538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_105007710_105008491
ENSMUSG00000032565.10_2	chr9	-	2450	1	FSM	ENSMUSG00000032565.10	ENSMUST00000186933.3	2147	1	30	-333	-9	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGCAGCTGTCTGG	NA	False	NA	NA	False	AGTAAA	-10	NA	105008988	105006538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_105006500_105009000
ENSMUSG00000032567.17_1	chr9	+	2477	5	FSM	ENSMUSG00000032567.17	ENSMUST00000035181.10	2755	5	-24	302	-24	-11	multi-exon	FALSE	canonical	3	44	junction_3	8.45576726264388	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAAGAAATGTCTGTAT	NA	False	NA	NA	False	AATACA	-5	NA	105272566	105282655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_105272865_105273743_105275058_105278674_105278886_105280594_105280791_105282197
ENSMUSG00000032567.17_17	chr9	+	2385	6	FSM	ENSMUSG00000032567.17	ENSMUST00000123807.8	2349	6	-47	11	-24	-11	multi-exon	FALSE	canonical	2	5	junction_2	22.5086649981735	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAAGAAATGTCTGTAT	NA	False	NA	NA	False	AATACA	-5	NA	105272566	105282655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_105272865_105273743_105273905_105273996_105275058_105278674_105278886_105280594_105280791_105282197
ENSMUSG00000032567.17_4	chr9	+	2536	6	NIC	ENSMUSG00000032567.17	novel	809	6	NA	NA	-24	-11	intron_retention	FALSE	canonical	3	20	junction_4	18.4932420089069	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAAGAAATGTCTGTAT	NA	False	NA	NA	False	AATACA	-5	NA	105272566	105282655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_105272865_105273743_105275058_105278674_105278886_105279916_105279976_105280594_105280791_105282197
ENSMUSG00000032567.17_6	chr9	+	2666	5	NIC	ENSMUSG00000032567.17	novel	2755	5	NA	NA	-24	-11	intron_retention	FALSE	canonical	3	19	junction_1	18.0138835346518	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAAGAAATGTCTGTAT	NA	False	NA	NA	False	AATACA	-5	NA	105272566	105282655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_105273054_105273743_105275058_105278674_105278886_105280594_105280791_105282197
ENSMUSG00000032567.17_7	chr9	+	2706	6	NIC	ENSMUSG00000032567.17	novel	1886	6	NA	NA	-5	-11	intron_retention	FALSE	canonical	3	19	junction_1	19.6916225842362	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAAGAAATGTCTGTAT	NA	False	NA	NA	False	AATACA	-5	NA	105272585	105282655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_105273054_105273743_105275058_105278674_105278886_105279916_105279976_105280594_105280791_105282197
ENSMUSG00000032567.17_8	chr9	+	3158	5	NIC	ENSMUSG00000032567.17	novel	2755	5	NA	NA	-22	-6	intron_retention	FALSE	canonical	3	32	junction_3	13.5092560861063	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTCTGTATTTATT	NA	False	NA	NA	False	AATACA	-10	NA	105272568	105282660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_105272865_105273743_105275058_105278674_105278886_105279916_105280791_105282197
ENSMUSG00000032570.18_1	chr9	-	3814	28	FSM	ENSMUSG00000032570.18	ENSMUST00000038118.15	4876	28	28	1034	0	531	multi-exon	FALSE	canonical	3	363	junction_24	33.8350310750022	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATGGTTGTTTTTTGGTT	NA	False	NA	-15	True	AGTAAA	-23	NA	105372304	105289590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105316539_105316645_105319964_105320055_105320144_105320241_105322416_105322515_105323250_105323376_105326020_105326088_105329002_105329079_105329973_105330043_105330732_105330886_105336858_105336968_105338215_105338278_105341824_105341861_105343781_105343872_105344899_105345017_105347235_105347347_105371613_105371797_105372091
ENSMUSG00000032570.18_4	chr9	-	3702	28	FSM	ENSMUSG00000032570.18	ENSMUST00000112558.10	5642	28	-13	1953	-2	532	multi-exon	FALSE	canonical	3	56	junction_27	76.7098107267147	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGTTGTTTTTTGGTTT	NA	False	NA	-14	True	AGTAAA	-24	NA	105372306	105289589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105316539_105316645_105319964_105320055_105320144_105320241_105322416_105322515_105323250_105323376_105326020_105326088_105329002_105329079_105329973_105330043_105330732_105330886_105336858_105336968_105338215_105338278_105341824_105341861_105343781_105343872_105344899_105345017_105347235_105347347_105371613_105371682_105372091
ENSMUSG00000032571.15_0	chr9	+	4859	20	FSM	ENSMUSG00000032571.15	ENSMUST00000065778.13	4711	20	-162	14	0	-6	multi-exon	FALSE	canonical	3	108	junction_1	21.4158146964708	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCATCCTGAGAGTTGGG	NA	False	NA	18	True	AGTAAA	-9	NA	105520206	105564842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_105520590_105521394_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
ENSMUSG00000032571.15_31	chr9	+	3355	17	ISM	ENSMUSG00000032571.15	ENSMUST00000065778.13	4711	20	7360	14	7329	-6	3prime_fragment	FALSE	canonical	3	121	junction_2	20.0615264561299	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCATCCTGAGAGTTGGG	NA	False	NA	18	True	AGTAAA	-9	NA	105527728	105564842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
ENSMUSG00000032571.15_5	chr9	+	4119	19	ISM	ENSMUSG00000032571.15	ENSMUST00000065778.13	4711	20	1384	13	1353	-5	3prime_fragment	FALSE	canonical	3	118	junction_2	20.5297886550793	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATCCTGAGAGTTGGGA	NA	False	NA	19	True	AGTAAA	-10	NA	105521752	105564843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
ENSMUSG00000032571.15_6	chr9	+	4502	20	NIC	ENSMUSG00000032571.15	novel	4929	15	NA	NA	-5	-5	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	35.7025259626095	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATCCTGAGAGTTGGGA	NA	False	NA	19	True	AGTAAA	-10	NA	105520201	105564843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_105520227_105521394_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
ENSMUSG00000032575.17_2	chr9	-	860	4	FSM	ENSMUSG00000032575.17	ENSMUST00000159283.8	2247	4	41	1346	-21	-8	multi-exon	FALSE	canonical	3	771	junction_3	24.1660919471891	275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTGAGCTGGCACAGTA	NA	False	NA	-19	True	ATTAAA	-16	NA	106769137	106765959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106766425_106767359_106767502_106768269_106768398_106769012
ENSMUSG00000032577.17_0	chr9	-	2725	11	FSM	ENSMUSG00000032577.17	ENSMUST00000035194.8	2816	11	84	7	-14	1	multi-exon	FALSE	canonical	3	157	junction_10	23.3752005338992	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGATTCCTGGGTTTC	NA	False	NA	-9	True	AATAAA	-17	NA	107166992	107132132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
ENSMUSG00000032577.17_7	chr9	-	2721	11	NNC	ENSMUSG00000032577.17	novel	2816	11	NA	NA	-14	1	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_10	45.4053961550827	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGATTCCTGGGTTTC	NA	False	NA	-9	True	AATAAA	-17	NA	107166992	107132132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166727
ENSMUSG00000032578.8_0	chr9	+	1981	3	FSM	ENSMUSG00000032578.8	ENSMUST00000085102.6	2850	3	839	30	-42	14	multi-exon	FALSE	canonical	1	4	junction_1	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTATGAAGCCTTCAGTGG	NA	False	NA	NA	False	AATAAA	-13	NA	107174063	107179156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107174234_107177122_107177344_107177566
ENSMUSG00000032579.15_10	chr9	-	1344	10	ISM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	1125	625	-562	1	3prime_fragment	FALSE	canonical	3	133	junction_9	21.7346511756779	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGGTGAGCCAGTAT	NA	False	NA	-29	True	AGTAAA	-14	NA	107214424	107204907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214199
ENSMUSG00000032579.15_6	chr9	-	1509	11	NNC	ENSMUSG00000032579.15	novel	2192	11	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	53.3310416174295	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGGTGAGCCAGTAT	NA	False	NA	-29	True	AGTAAA	-14	NA	107215529	107204907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214237_107214578_107215479
ENSMUSG00000032579.15_7	chr9	-	1560	11	FSM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	7	625	7	1	multi-exon	FALSE	canonical	3	133	junction_9	21.6296093353532	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGGTGAGCCAGTAT	NA	False	NA	-29	True	AGTAAA	-14	NA	107215542	107204907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214199_107214578_107215479
ENSMUSG00000032579.15_8	chr9	-	1185	10	NIC	ENSMUSG00000032579.15	novel	2192	11	NA	NA	7	4	combination_of_known_splicesites	FALSE	canonical	3	10	junction_9	55.2618905142583	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGTGAGCCAGTATTTT	NA	False	NA	-26	True	AGTAAA	-17	NA	107215542	107204904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107215479
ENSMUSG00000032580.13_0	chr9	-	3372	25	NIC	ENSMUSG00000032580.13	novel	3205	25	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	3	17	junction_24	145.293470976274	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGGGTTTCCTGTGTC	9738	False	NA	-10	True	AAGAAA	-8	NA	107648162	107617702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107647750
ENSMUSG00000032580.13_1	chr9	-	3066	25	FSM	ENSMUSG00000032580.13	ENSMUST00000182659.8	3205	25	6	133	-1	-4	multi-exon	FALSE	canonical	3	262	junction_19	112.690456068333	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGGGTTTCCTGTGTC	9711	False	NA	-10	True	AAGAAA	-8	NA	107648189	107617702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
ENSMUSG00000032580.13_11	chr9	-	3066	25	FSM	ENSMUSG00000032580.13	ENSMUST00000035199.13	3064	25	-6	4	3	-4	multi-exon	FALSE	canonical	3	44	junction_9	145.554250815823	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGGGTTTCCTGTGTC	9708	False	NA	-10	True	AAGAAA	-8	NA	107648192	107617702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626996_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
ENSMUSG00000032580.13_9	chr9	-	3208	19	ISM	ENSMUSG00000032580.13	ENSMUST00000183307.8	6321	23	13216	2	-505	-1	3prime_fragment	FALSE	canonical	3	455	junction_17	59.7162270892743	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTCCTGTGTCTTTATTG	418	False	NA	-3	True	AAGAAA	-15	NA	107634964	107617695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107
ENSMUSG00000032582.15_0	chr9	-	2119	17	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_15	79.7133291473264	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAATTTTGTTAAAGT	7593	False	NA	NA	False	AATAAA	-14	NA	107749940	107650765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
ENSMUSG00000032582.15_1	chr9	-	3620	21	FSM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	92	4	4	0	multi-exon	FALSE	canonical	3	125	junction_19	71.8828734817968	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAATTTTGTTAAAGT	7605	False	NA	NA	False	AATAAA	-14	NA	107749928	107650765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
ENSMUSG00000032582.15_17	chr9	-	3719	22	NIC	ENSMUSG00000032582.15	novel	3716	21	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_21	111.389126107381	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAATTTTGTTAAAGT	7613	False	NA	NA	False	AATAAA	-14	NA	107749920	107650765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107738821_107738929_107749847
ENSMUSG00000032582.15_3	chr9	-	3896	21	FSM	ENSMUSG00000032582.15	ENSMUST00000035201.13	3999	21	95	8	-1	0	multi-exon	FALSE	canonical	3	99	junction_19	75.7708882091269	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAATTTTGTTAAAGT	7600	False	NA	NA	False	AATAAA	-14	NA	107749933	107650765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730874_107737547_107737659_107749847
ENSMUSG00000032582.15_39	chr9	-	3995	22	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_21	113.526006690147	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAATTTTGTTAAAGT	7608	False	NA	NA	False	AATAAA	-14	NA	107749925	107650765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730874_107737547_107737659_107738821_107738929_107749847
ENSMUSG00000032582.15_9	chr9	-	2937	19	ISM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	19909	4	-1479	0	3prime_fragment	FALSE	canonical	3	211	junction_18	55.8402980730663	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAATTTTGTTAAAGT	NA	False	NA	NA	False	AATAAA	-14	NA	107730111	107650765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323
ENSMUSG00000032583.8_1	chr9	+	2064	6	FSM	ENSMUSG00000032583.8	ENSMUST00000035202.4	2042	6	-36	14	-5	-9	multi-exon	FALSE	canonical	3	19	junction_2	6.62117814289874	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAACACTGTTGCCCTT	NA	False	NA	NA	False	ATTAAA	-8	NA	107765344	107780324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107765602_107775870_107776011_107777225_107777715_107778393_107779160_107779814_107779963_107780060
ENSMUSG00000032583.8_2	chr9	+	3515	3	ISM	ENSMUSG00000032583.8	ENSMUST00000191906.6	2821	4	-22	7	-22	-7	intron_retention	FALSE	canonical	3	19	junction_2	7.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACACTGTTGCCCTTTG	NA	False	NA	NA	False	ATTAAA	-10	NA	107765327	107780326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107765602_107775870_107776011_107777225
ENSMUSG00000032583.8_3	chr9	+	2760	5	NIC	ENSMUSG00000032583.8	novel	2042	6	NA	NA	-22	-9	intron_retention	FALSE	canonical	3	19	junction_2	6.41774882649672	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAACACTGTTGCCCTT	NA	False	NA	NA	False	ATTAAA	-8	NA	107765327	107780324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107765602_107775870_107776011_107777225_107779160_107779814_107779963_107780060
ENSMUSG00000032583.8_5	chr9	+	715	3	ISM	ENSMUSG00000032583.8	ENSMUST00000035202.4	2042	6	13478	12	13478	-7	3prime_fragment	FALSE	canonical	3	23	junction_1	5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACACTGTTGCCCTTTG	NA	False	NA	NA	False	ATTAAA	-10	NA	107778858	107780326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107779160_107779814_107779963_107780060
ENSMUSG00000032584.13_0	chr9	+	4708	19	FSM	ENSMUSG00000032584.13	ENSMUST00000035203.9	4722	19	7	7	7	-5	multi-exon	TRUE	canonical	0	0	junction_3	1.21207912384841	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACAAGTAATGGTGTATG	NA	False	NA	NA	False	NA	NA	NA	107784078	107797575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107785580_107788718_107788908_107788992_107789122_107789276_107789448_107789770_107789932_107790274_107790441_107790547_107790685_107791418_107791581_107791674_107791769_107791910_107792127_107792208_107792356_107792435_107792602_107792902_107793131_107793485_107793567_107793750_107793933_107794013_107794124_107794397_107794564_107794962_107795100_107797010
ENSMUSG00000032586.10_0	chr9	+	1950	15	FSM	ENSMUSG00000032586.10	ENSMUST00000049348.9	2706	15	15	741	4	4	multi-exon	TRUE	canonical	3	256	junction_7	39.1366001255571	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTCTGGCTGTATAAATT	NA	False	NA	17	True	AATAAA	-18	NA	107828169	107848728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
ENSMUSG00000032586.10_3	chr9	+	2548	14	NIC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	4	4	intron_retention	FALSE	canonical	3	271	junction_2	36.9687217865663	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTCTGGCTGTATAAATT	NA	False	NA	17	True	AATAAA	-18	NA	107828169	107848728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
ENSMUSG00000032589.15_0	chr9	-	1711	5	ISM	ENSMUSG00000032589.15	ENSMUST00000124763.2	7496	8	5519	2553	5519	-2553	3prime_fragment	TRUE	canonical	3	14	junction_1	4.12310562561766	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGGAGTTAATTGCAAAC	3822	False	NA	NA	False	AATAAA	-14	NA	107982093	107975774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_107977097_107980388_107980482_107980862_107980918_107981142_107981275_107981984
ENSMUSG00000032590.15_2	chr9	-	2380	22	FSM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	132	6	2	-5	multi-exon	FALSE	canonical	3	126	junction_21	23.0064567492301	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGAGCCTGGTCTGTGCTG	NA	False	NA	-38	True	AATAAA	-8	NA	107971673	107962617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425_107971559_107971633
ENSMUSG00000032590.15_21	chr9	-	2255	21	NIC	ENSMUSG00000032590.15	novel	2518	22	NA	NA	2	-3	combination_of_known_splicesites	FALSE	canonical	3	10	junction_19	42.4109360896456	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTGGTCTGTGCTGGT	NA	False	NA	-36	True	AATAAA	-10	NA	107971673	107962615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107971425_107971559_107971633
ENSMUSG00000032590.15_4	chr9	-	2434	21	ISM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	157	2	-8	-1	intron_retention	FALSE	canonical	3	143	junction_17	21.0653744329409	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGGTCTGTGCTGGTAC	NA	False	NA	-34	True	AATAAA	-12	NA	107971648	107962613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425
ENSMUSG00000032591.16_1	chr9	+	2248	18	FSM	ENSMUSG00000032591.16	ENSMUST00000035211.14	2262	18	11	3	-7	2	multi-exon	FALSE	canonical	3	16	junction_13	9.09998288906715	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATAGAGTGCTTCTTAGT	6674	False	NA	15	True	CATAAA	-20	NA	107957645	107962199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959663_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
ENSMUSG00000032591.16_26	chr9	+	1091	1	NIC	ENSMUSG00000032591.16	novel	2262	18	NA	NA	-395	2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATAGAGTGCTTCTTAGT	NA	False	NA	15	True	CATAAA	-20	NA	107961108	107962199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107961100_107962200
ENSMUSG00000032591.16_43	chr9	+	1738	14	ISM	ENSMUSG00000032591.16	ENSMUST00000035211.14	2262	18	1393	7	1346	1	3prime_fragment	FALSE	canonical	3	16	junction_9	10.2020997954679	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTATAGAGTGCTTCT	8056	False	NA	11	True	CATAAA	-16	NA	107959027	107962195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107959119_107959199_107959321_107959401_107959521_107959663_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
ENSMUSG00000032594.12_1	chr9	+	4484	7	NIC	ENSMUSG00000032594.12	novel	4559	6	NA	NA	0	-10	combination_of_known_junctions	FALSE	canonical	3	52	junction_5	118.632134488651	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTGAACTCTGTCCAA	6853	False	NA	7	True	AATAAA	-7	NA	107879832	107925971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922100_107922444_107922513_107922661
ENSMUSG00000032594.12_2	chr9	+	4417	6	FSM	ENSMUSG00000032594.12	ENSMUST00000035214.11	4559	6	134	8	1	-8	multi-exon	FALSE	canonical	3	206	junction_5	50.8700304698159	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACTCTGTCCAAGT	6854	False	NA	9	True	AATAAA	-9	NA	107879833	107925973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922100_107922661
ENSMUSG00000032594.12_3	chr9	+	4291	6	NIC	ENSMUSG00000032594.12	novel	4559	6	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	111.90781920849	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACTCTGTCCAAGT	6853	False	NA	9	True	AATAAA	-9	NA	107879832	107925973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107880022_107901301_107901523_107909197_107909409_107918103_107918286_107921923_107922100_107922661
ENSMUSG00000032594.12_30	chr9	+	2529	1	ISM	ENSMUSG00000032594.12	ENSMUST00000035214.11	4559	6	43747	6	1385	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAACTCTGTCCAAGTCT	8455	False	NA	11	True	AATAAA	-11	NA	107923446	107925975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107923400_107926000
ENSMUSG00000032594.12_4	chr9	+	2305	6	FSM	ENSMUSG00000032594.12	ENSMUST00000167159.9	2157	6	-5	-143	4	109	multi-exon	FALSE	canonical	3	91	junction_5	93.84540478894	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAATGAATGCCTTGA	6857	False	NA	NA	False	NA	NA	NA	107879836	107923451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922513_107922661
ENSMUSG00000032594.12_5	chr9	+	4976	5	ISM	ENSMUSG00000032594.12	ENSMUST00000035214.11	4559	6	137	8	4	-8	intron_retention	FALSE	canonical	3	292	junction_3	27.3541587331799	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACTCTGTCCAAGT	6857	False	NA	9	True	AATAAA	-9	NA	107879836	107925973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923
ENSMUSG00000032598.9_0	chr9	+	2955	13	FSM	ENSMUSG00000032598.9	ENSMUST00000035218.9	3360	13	10	395	5	-395	multi-exon	FALSE	canonical	3	52	junction_4	11.5551215196264	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGCTGGGCTTCCCTGTA	3160	False	NA	1	True	AATAAA	-12	NA	108685576	108695648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108685854_108688244_108688355_108688747_108688953_108689077_108689169_108689417_108689909_108691147_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
ENSMUSG00000032598.9_16	chr9	+	3189	12	NIC	ENSMUSG00000032598.9	novel	3360	13	NA	NA	20	-395	intron_retention	FALSE	canonical	3	72	junction_6	8.15551326982029	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGCTGGGCTTCCCTGTA	3175	False	NA	1	True	AATAAA	-12	NA	108685591	108695648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108685854_108688244_108688355_108688747_108688953_108689077_108689909_108691147_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
ENSMUSG00000032598.9_2	chr9	+	3043	14	NIC	ENSMUSG00000032598.9	novel	3360	13	NA	NA	0	-393	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	28.6732252485458	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGGCTTCCCTGTATG	3155	False	NA	3	True	AATAAA	-14	NA	108685571	108695650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108685854_108688020_108688102_108688244_108688355_108688747_108688953_108689077_108689169_108689417_108689909_108691147_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
ENSMUSG00000032598.9_8	chr9	+	2471	12	NIC	ENSMUSG00000032598.9	novel	3360	13	NA	NA	0	-393	combination_of_known_junctions	FALSE	canonical	2	7	junction_4	23.3436419573877	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGGCTTCCCTGTATG	3155	False	NA	3	True	AATAAA	-14	NA	108685571	108695650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108685854_108688244_108688355_108688747_108688953_108689077_108689169_108691147_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
ENSMUSG00000032599.13_0	chr9	+	1291	4	FSM	ENSMUSG00000032599.13	ENSMUST00000192226.6	607	4	-48	-636	-5	-8	multi-exon	FALSE	canonical	3	46	junction_3	30.6847772609735	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATGGAAAAATGTGTCT	NA	False	NA	NA	False	AATAAA	-8	NA	108661015	108675180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108661070_108673262_108673596_108673853_108673983_108674405
ENSMUSG00000032599.13_1	chr9	+	1167	3	FSM	ENSMUSG00000032599.13	ENSMUST00000192307.6	1191	3	22	2	-4	-2	multi-exon	FALSE	canonical	3	25	junction_2	47	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAAATGTGTCTTGTAGT	NA	False	NA	NA	False	AATAAA	-14	NA	108661016	108675186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108661070_108673262_108673596_108674405
ENSMUSG00000032599.13_16	chr9	+	670	1	ISM	ENSMUSG00000032599.13	ENSMUST00000193560.6	1708	6	21867	0	7476	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTGCTGCTGTCGTTC	445	False	NA	14	True	AATACA	-18	NA	108682861	108683531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108682900_108683500
ENSMUSG00000032599.13_18	chr9	+	3543	6	NIC	ENSMUSG00000032599.13	novel	1708	6	NA	NA	-10	0	intron_retention	FALSE	canonical	3	6	junction_2	39.7894458368045	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTGCTGCTGTCGTTC	NA	False	NA	14	True	AATACA	-18	NA	108661010	108683531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108661070_108673262_108675378_108675469_108675693_108676440_108676617_108681740_108681917_108682737
ENSMUSG00000032599.13_2	chr9	+	1680	2	FSM	ENSMUSG00000032599.13	ENSMUST00000193634.2	2820	2	-5	1145	-5	-3	multi-exon	FALSE	canonical	3	119	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCTTGGCTCACCCAC	NA	False	NA	5	True	AATAAA	-19	NA	108661015	108674888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108661070_108673262
ENSMUSG00000032599.13_3	chr9	+	1255	3	NIC	ENSMUSG00000032599.13	novel	607	4	NA	NA	-5	-5	intron_retention	FALSE	canonical	3	46	junction_2	36.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAGGCTTGGCTCACCC	NA	False	NA	3	True	AATAAA	-17	NA	108661015	108674886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108661070_108673262_108673983_108674405
ENSMUSG00000032599.13_4	chr9	+	1759	6	NIC	ENSMUSG00000032599.13	novel	1708	6	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	35.9243649909083	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTGCTGCTGTCGTT	NA	False	NA	13	True	AATACA	-17	NA	108661011	108683530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108661070_108673262_108673596_108675469_108675693_108676440_108676617_108681740_108681917_108682737
ENSMUSG00000032599.13_6	chr9	+	797	3	FSM	ENSMUSG00000032599.13	ENSMUST00000194875.6	748	3	-55	6	-12	-6	multi-exon	FALSE	canonical	2	13	junction_2	53	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAAGGCTTGGCTCACC	NA	False	NA	2	True	AATAAA	-16	NA	108661008	108674885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108661070_108673262_108673596_108674482
ENSMUSG00000032599.13_8	chr9	+	1026	5	NIC	ENSMUSG00000032599.13	novel	730	4	NA	NA	-3	-6	combination_of_known_junctions	FALSE	canonical	1	4	junction_3	45.778679535347	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAAGGCTTGGCTCACC	NA	False	NA	2	True	AATAAA	-16	NA	108661017	108674885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108661070_108673262_108673596_108673739_108673772_108673853_108673983_108674405
ENSMUSG00000032599.13_9	chr9	+	3622	5	NIC	ENSMUSG00000032599.13	novel	1708	6	NA	NA	3	0	intron_retention	FALSE	canonical	3	21	junction_3	39.6736688497547	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTGCTGCTGTCGTTC	NA	False	NA	14	True	AATACA	-18	NA	108661023	108683531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108661070_108673262_108675693_108676440_108676617_108681740_108681917_108682737
ENSMUSG00000032601.14_1	chr9	+	4913	11	FSM	ENSMUSG00000032601.14	ENSMUST00000035220.12	4965	11	45	7	45	-7	multi-exon	FALSE	canonical	3	310	junction_7	36.5355990781594	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGACTTTCCTGGTGT	1348	False	NA	13	True	AATAAA	-13	NA	108569386	108627628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108569912_108591471_108591508_108594061_108594115_108596401_108596486_108605372_108605480_108610308_108610463_108617633_108617736_108617886_108617962_108621428_108621495_108622680_108622823_108624059
ENSMUSG00000032601.14_26	chr9	+	2237	1	ISM	ENSMUSG00000032601.14	ENSMUST00000035220.12	4965	11	56055	2	-47	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTTCCTGGTGTGTCTC	NA	False	NA	18	True	AATAAA	-18	NA	108625396	108627633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108625400_108627600
ENSMUSG00000032602.7_1	chr9	+	1717	9	FSM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	66	0	66	0	multi-exon	FALSE	canonical	3	619	junction_8	102.171118717571	909	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCGTGTGATATTTTCT	5143	False	NA	3	True	NA	NA	NA	108539362	108561840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
ENSMUSG00000032604.17_0	chr9	+	2442	24	FSM	ENSMUSG00000032604.17	ENSMUST00000006838.16	2800	24	353	5	0	0	multi-exon	FALSE	canonical	3	468	junction_2	39.8133167299073	659	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	13	True	AATAAA	-16	NA	108385257	108393135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
ENSMUSG00000032606.8_1	chr9	+	2106	6	FSM	ENSMUSG00000032606.8	ENSMUST00000035227.8	2133	6	21	6	-5	-6	multi-exon	FALSE	canonical	3	101	junction_5	4.63033476111609	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGTGACTGTGTCAGCT	NA	False	NA	8	True	NA	NA	NA	108167648	108173691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108167862_108170534_108170712_108171129_108171244_108171644_108171717_108172087_108172193_108172266
ENSMUSG00000032607.13_0	chr9	+	2027	9	FSM	ENSMUSG00000032607.13	ENSMUST00000035230.7	2082	9	49	6	-3	-6	multi-exon	TRUE	canonical	3	166	junction_5	15.4029218007494	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCTATGGTCTCTAGCT	NA	False	NA	15	True	AATAAA	-16	NA	108174117	108179495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
ENSMUSG00000032607.13_4	chr9	+	2115	8	NIC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	11	-6	intron_retention	FALSE	canonical	3	166	junction_4	16.1042521954765	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCTATGGTCTCTAGCT	NA	False	NA	15	True	AATAAA	-16	NA	108174131	108179495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
ENSMUSG00000032609.13_0	chr9	-	2307	6	FSM	ENSMUSG00000032609.13	ENSMUST00000035232.13	1897	6	-391	-19	-2	-3	multi-exon	TRUE	canonical	3	5	junction_5	2.71293199325011	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTGTGGGGTTTCT	9985	False	NA	-9	True	AATAAA	-11	NA	108329967	108324837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108325685_108326024_108326127_108326265_108326491_108326819_108326985_108328074_108328591_108329515
ENSMUSG00000032609.13_2	chr9	-	3528	3	NIC	ENSMUSG00000032609.13	novel	1897	6	NA	NA	-27	-3	intron_retention	FALSE	canonical	3	5	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTGTGGGGTTTCT	NA	False	NA	-9	True	AATAAA	-11	NA	108329630	108324837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108325685_108326024_108328591_108329515
ENSMUSG00000032609.13_3	chr9	-	3333	5	NIC	ENSMUSG00000032609.13	novel	2718	11	NA	NA	14	-3	intron_retention	FALSE	canonical	3	5	junction_4	3.03108891324554	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTGTGGGGTTTCT	9981	False	NA	-9	True	AATAAA	-11	NA	108329903	108324837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108325685_108326024_108326127_108326265_108326491_108326819_108328591_108329515
ENSMUSG00000032611.10_0	chr9	+	1118	4	FSM	ENSMUSG00000032611.10	ENSMUST00000035234.6	1101	4	-31	14	-2	-14	multi-exon	FALSE	canonical	3	7	junction_3	2.62466929133727	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAACCATAAAAAGGGTGG	5924	False	NA	NA	False	AATAAA	-6	NA	108270001	108274955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108270059_108270433_108270839_108272492_108272585_108274391
ENSMUSG00000032611.10_1	chr9	+	1062	3	ISM	ENSMUSG00000032611.10	ENSMUST00000035234.6	1101	4	400	14	400	-14	3prime_fragment	FALSE	canonical	3	7	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAACCATAAAAAGGGTGG	6355	False	NA	NA	False	AATAAA	-6	NA	108270432	108274955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108270839_108272492_108272585_108274391
ENSMUSG00000032612.15_0	chr9	+	3331	22	FSM	ENSMUSG00000032612.15	ENSMUST00000035237.12	3662	22	45	286	1	0	multi-exon	FALSE	canonical	3	580	junction_19	65.884562002066	1462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGATGTTGTCCTCTA	NA	False	NA	10	True	AGTAAA	-14	NA	108225096	108269458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
ENSMUSG00000032612.15_5	chr9	+	3222	21	NIC	ENSMUSG00000032612.15	novel	3662	22	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_19	156.074429359841	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGATGTTGTCCTCTA	NA	False	NA	10	True	AGTAAA	-14	NA	108225101	108269458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108268178_108268268_108268877
ENSMUSG00000032615.15_3	chr11	+	1266	5	FSM	ENSMUSG00000032615.15	ENSMUST00000102695.4	1306	5	37	3	6	-3	multi-exon	FALSE	canonical	3	45	junction_1	9.12414379544733	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCCTGTGCTGTGGCCTT	1756	False	NA	3	True	AATAAA	-13	NA	59738935	59767356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59739199_59743616_59743718_59751575_59751637_59765378_59765494_59766630
ENSMUSG00000032615.15_4	chr11	+	1020	4	NIC	ENSMUSG00000032615.15	novel	1306	5	NA	NA	189	-5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	26.0426999794995	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATAGCCTGTGCTGTGGCC	1939	False	NA	1	True	AATAAA	-11	NA	59739118	59767354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_59739199_59743616_59743718_59765378_59765494_59766630
ENSMUSG00000032615.15_5	chr11	+	1170	5	FSM	ENSMUSG00000032615.15	ENSMUST00000137695.2	1387	5	216	1	216	-1	multi-exon	FALSE	canonical	2	6	junction_1	25.8976350271603	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGCTGTGGCCTTCT	1966	False	NA	5	True	AATAAA	-15	NA	59739145	59767358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59739311_59743616_59743718_59751575_59751637_59765378_59765494_59766630
ENSMUSG00000032615.15_7	chr11	+	1362	5	FSM	ENSMUSG00000032615.15	ENSMUST00000149076.8	1316	5	-53	7	-53	-7	multi-exon	FALSE	canonical	3	8	junction_1	25.0337272494529	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATAGCCTGTGCTGTGG	2592	False	NA	-1	True	AATAAA	-9	NA	59730219	59767352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59730583_59743616_59743718_59751575_59751637_59765378_59765494_59766630
ENSMUSG00000032621.9_0	chr13	-	1185	1	ISM	ENSMUSG00000032621.9	ENSMUST00000210489.2	6330	10	21783	2267	6327	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTCTTCAGTTTCTAT	NA	False	NA	0	True	AATAAA	-18	NA	103879307	103878122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_103878100_103879300
ENSMUSG00000032621.9_1	chr13	-	3829	12	FSM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	97	8	95	-8	multi-exon	FALSE	canonical	3	148	junction_3	30.0305629441708	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGGAAAGAGTCTTCAGTT	10014	False	NA	-5	True	AATAAA	-13	NA	103911019	103878127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
ENSMUSG00000032621.9_4	chr13	-	3830	3	FSM	ENSMUSG00000032621.9	ENSMUST00000210269.2	619	3	-1216	-1995	-1216	-4	multi-exon	FALSE	canonical	3	193	junction_2	15	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAGTCTTCAGTTTCTA	NA	False	NA	-1	True	AATAAA	-17	NA	103886850	103878123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_103880225_103881292_103881438_103885266
ENSMUSG00000032621.9_43	chr13	-	2530	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	100	9740	98	1116	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAATTGTAGTGTTCATT	10017	False	NA	NA	False	AATAAA	-2	NA	103911016	103887859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
ENSMUSG00000032623.10_1	chr5	+	2013	7	NNC	ENSMUSG00000032623.10	novel	2021	6	NA	NA	-25814	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.7487796249151	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAAACTAAATGAATTAA	NA	False	NA	8	True	ATTAAA	-14	NA	121026784	121059704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_121026862_121052672_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
ENSMUSG00000032623.10_3	chr5	+	2017	7	NNC	ENSMUSG00000032623.10	novel	2021	6	NA	NA	-25814	-11	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	52.429052590673	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAAACTAAATGAATTAA	NA	False	NA	8	True	ATTAAA	-14	NA	121026784	121059704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_121026866_121052672_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
ENSMUSG00000032623.10_43	chr5	+	1729	6	FSM	ENSMUSG00000032623.10	ENSMUST00000044224.5	2021	6	285	7	285	-7	multi-exon	FALSE	canonical	3	143	junction_4	11.5654658358408	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACTAAATGAATTAATTTA	NA	False	NA	12	True	ATTAAA	-18	NA	121052883	121059708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
ENSMUSG00000032623.10_45	chr5	+	920	3	ISM	ENSMUSG00000032623.10	ENSMUST00000044224.5	2021	6	4543	7	4543	-7	3prime_fragment	FALSE	canonical	3	143	junction_1	8.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACTAAATGAATTAATTTA	NA	False	NA	12	True	ATTAAA	-18	NA	121057141	121059708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_121057298_121057959_121058114_121059098
ENSMUSG00000032624.17_0	chr17	+	5205	22	FSM	ENSMUSG00000032624.17	ENSMUST00000112363.10	5081	22	-48	-76	12	-15	multi-exon	FALSE	canonical	3	110	junction_3	90.7300948604083	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAGATAATCAAA	NA	False	NA	-5	True	NA	NA	NA	83658371	83787769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_83658669_83717454_83717638_83729034_83729165_83734651_83734781_83735428_83735455_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
ENSMUSG00000032624.17_1	chr17	+	5051	21	FSM	ENSMUSG00000032624.17	ENSMUST00000049503.10	5052	21	-14	15	-14	-15	multi-exon	FALSE	canonical	3	67	junction_3	95.8126296476618	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAGATAATCAAA	NA	False	NA	-5	True	NA	NA	NA	83658396	83787769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_83658669_83717454_83717638_83729034_83729165_83735428_83735455_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
ENSMUSG00000032624.17_15	chr17	+	5098	22	NIC	ENSMUSG00000032624.17	novel	5441	24	NA	NA	23	-15	combination_of_known_junctions	FALSE	canonical	3	67	junction_3	112.735940543597	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAGATAATCAAA	NA	False	NA	-5	True	NA	NA	NA	83658382	83787769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_83658669_83717454_83717638_83729034_83729165_83735428_83735455_83735644_83735678_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
ENSMUSG00000032624.17_2	chr17	+	5375	23	FSM	ENSMUSG00000032624.17	ENSMUST00000234584.2	2934	23	-268	-2173	16	-15	multi-exon	FALSE	canonical	3	198	junction_4	84.4550347377939	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAGATAATCAAA	NA	False	NA	-5	True	NA	NA	NA	83658375	83787769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_83658669_83717454_83717638_83729034_83729165_83732686_83732861_83734651_83734781_83735428_83735455_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
ENSMUSG00000032624.17_3	chr17	+	5233	23	NIC	ENSMUSG00000032624.17	novel	5441	24	NA	NA	17	-15	combination_of_known_junctions	FALSE	canonical	3	110	junction_3	107.479269575252	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAGATAATCAAA	NA	False	NA	-5	True	NA	NA	NA	83658376	83787769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_83658669_83717454_83717638_83729034_83729165_83734651_83734781_83735428_83735455_83735644_83735678_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
ENSMUSG00000032624.17_8	chr17	+	5412	24	FSM	ENSMUSG00000032624.17	ENSMUST00000096766.12	5441	24	12	17	12	-15	multi-exon	FALSE	canonical	3	134	junction_6	101.418055237548	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAGATAATCAAA	NA	False	NA	-5	True	NA	NA	NA	83658371	83787769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_83658669_83717454_83717638_83729034_83729165_83732686_83732861_83734651_83734781_83735428_83735455_83735644_83735678_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
ENSMUSG00000032624.17_97	chr17	+	2057	1	ISM	ENSMUSG00000032624.17	ENSMUST00000096766.12	5441	24	127353	17	21983	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAGATAATCAAA	NA	False	NA	-5	True	NA	NA	NA	83785712	83787769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_83785700_83787800
ENSMUSG00000032625.15_1	chr6	-	4108	24	NIC	ENSMUSG00000032625.15	novel	10998	28	NA	NA	-9	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	1.47313689966065	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCATGGACTCATTTTTA	NA	False	NA	NA	False	AATAAA	-13	NA	12555121	12320798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_12321117_12321887_12321971_12324595_12324692_12327492_12327667_12330936_12331112_12331543_12331690_12331927_12332046_12337250_12337367_12338579_12338725_12343111_12343266_12348195_12348330_12351983_12352163_12379391_12379656_12381219_12381415_12396554_12396659_12397837_12397971_12405107_12405224_12408801_12409037_12418243_12418439_12468787_12469001_12471040_12471197_12500985_12501168_12503914_12504164_12554893
ENSMUSG00000032633.13_1	chr11	-	2884	13	FSM	ENSMUSG00000032633.13	ENSMUST00000102697.10	3437	13	208	345	-97	37	multi-exon	FALSE	canonical	3	222	junction_12	22.951034835057	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCCGACTACATGTTT	NA	False	NA	-8	True	AATAAA	-14	NA	59700634	59682578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700485
ENSMUSG00000032633.13_10	chr11	-	3193	13	NIC	ENSMUSG00000032633.13	novel	3567	13	NA	NA	-95	37	combination_of_known_junctions	FALSE	canonical	3	36	junction_4	67.9384934252217	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCCGACTACATGTTT	NA	False	NA	-8	True	AATAAA	-14	NA	59700632	59682578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686402_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700485
ENSMUSG00000032633.13_2	chr11	-	3006	14	NIC	ENSMUSG00000032633.13	novel	3437	13	NA	NA	-98	37	combination_of_known_junctions	FALSE	canonical	3	19	junction_12	92.1306635794925	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCCGACTACATGTTT	NA	False	NA	-8	True	AATAAA	-14	NA	59700635	59682578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700190_59700312_59700485
ENSMUSG00000032633.13_7	chr11	-	2857	13	NIC	ENSMUSG00000032633.13	novel	3437	13	NA	NA	103	37	combination_of_known_junctions	FALSE	canonical	3	13	junction_12	74.517848346703	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCCGACTACATGTTT	NA	False	NA	-8	True	AATAAA	-14	NA	59700647	59682578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700525
ENSMUSG00000032637.16_10	chr7	-	3993	22	NIC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	7	-5	intron_retention	FALSE	canonical	3	238	junction_21	181.885750689423	130	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAACTTAACCTGCCTA	6935	False	NA	-12	True	NA	NA	NA	126101579	126090891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
ENSMUSG00000032637.16_18	chr7	-	3975	24	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	8	-5	combination_of_known_splicesites	FALSE	canonical	3	238	junction_2	247.412454204056	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAACTTAACCTGCCTA	9422	False	NA	-12	True	NA	NA	NA	126102601	126090891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126091388_126091620_126091781_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
ENSMUSG00000032637.16_3	chr7	-	3943	22	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	86	-5	intron_retention	FALSE	canonical	3	143	junction_21	199.099617268271	113	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAACTTAACCTGCCTA	7328	False	NA	-12	True	NA	NA	NA	126101186	126090891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
ENSMUSG00000032637.16_31	chr7	-	2228	8	ISM	ENSMUSG00000032637.16	ENSMUST00000167759.8	4023	22	7145	5	-1893	-5	3prime_fragment	FALSE	canonical	3	883	junction_5	86.1839513447124	298	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAACTTAACCTGCCTA	NA	False	NA	-12	True	NA	NA	NA	126094441	126090891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371
ENSMUSG00000032637.16_33	chr7	-	3550	24	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	14	-5	combination_of_known_splicesites	FALSE	canonical	3	238	junction_2	256.034939723406	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAACTTAACCTGCCTA	6942	False	NA	-12	True	NA	NA	NA	126101572	126090891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126091388_126091620_126091781_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
ENSMUSG00000032637.16_34	chr7	-	1792	10	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	-1893	-5	combination_of_known_splicesites	FALSE	canonical	3	238	junction_2	314.560402647219	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAACTTAACCTGCCTA	NA	False	NA	-12	True	NA	NA	NA	126094441	126090891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126091388_126091620_126091781_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371
ENSMUSG00000032637.16_4	chr7	-	4421	22	NIC	ENSMUSG00000032637.16	novel	3853	23	NA	NA	16	-5	intron_retention	FALSE	canonical	3	137	junction_12	233.379208318315	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAACTTAACCTGCCTA	9430	False	NA	-12	True	NA	NA	NA	126102593	126090891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
ENSMUSG00000032637.16_6	chr7	-	4402	22	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	17	-5	intron_retention	FALSE	canonical	3	324	junction_21	166.887513543916	364	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAACTTAACCTGCCTA	9431	False	NA	-12	True	NA	NA	NA	126102592	126090891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
ENSMUSG00000032640.11_1	chr7	+	4185	3	FSM	ENSMUSG00000032640.11	ENSMUST00000036372.8	4176	3	-24	15	-24	-15	multi-exon	FALSE	canonical	3	165	junction_1	21	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTACTCTGCAGACCCAT	NA	False	NA	14	True	AATAAA	-21	NA	65759238	65823531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_65759976_65774989_65775486_65820579
ENSMUSG00000032640.11_4	chr7	+	3174	2	ISM	ENSMUSG00000032640.11	ENSMUST00000036372.8	4176	3	16001	15	16001	-15	3prime_fragment	FALSE	canonical	3	207	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTACTCTGCAGACCCAT	NA	False	NA	14	True	AATAAA	-21	NA	65775263	65823531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_65775486_65820579
ENSMUSG00000032640.11_5	chr7	+	1918	1	ISM	ENSMUSG00000032640.11	ENSMUST00000036372.8	4176	3	62350	16	62350	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTACTCTGCAGACCCA	NA	False	NA	13	True	AATAAA	-20	NA	65821612	65823530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_65821600_65823500
ENSMUSG00000032641.19_0	chr6	-	1551	3	FSM	ENSMUSG00000032641.19	ENSMUST00000215088.2	1484	3	-65	-2	-18	2	multi-exon	FALSE	canonical	3	13	junction_1	14.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGAATTGATTTACT	NA	False	NA	-21	True	ATTAAA	-14	NA	134864813	134846122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_134847407_134863853_134863900_134864592
ENSMUSG00000032641.19_12	chr6	-	1600	4	FSM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	-43	53	-14	1	multi-exon	FALSE	canonical	3	36	junction_1	18.9267594221045	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTGAGAATTGATTTAC	NA	False	NA	-22	True	ATTAAA	-13	NA	134874864	134846123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_134847446_134864592_134864749_134874124_134874177_134874794
ENSMUSG00000032641.19_13	chr6	-	1563	4	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	-15	2	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	8.64098759787715	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGAATTGATTTACT	NA	False	NA	-21	True	ATTAAA	-14	NA	134874865	134846122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134874794
ENSMUSG00000032641.19_14	chr6	-	1589	3	NIC	ENSMUSG00000032641.19	novel	1484	3	NA	NA	-11	3	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	15	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTGATTTACTTAGTTT	NA	False	NA	-15	True	ATTAAA	-20	NA	134864806	134846116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_134847446_134863853_134863900_134864592
ENSMUSG00000032641.19_2	chr6	-	1286	1	NIC	ENSMUSG00000032641.19	novel	1643	4	NA	NA	17323	2	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGAATTGATTTACT	NA	False	NA	-21	True	ATTAAA	-14	NA	134847408	134846122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_134846100_134847400
ENSMUSG00000032641.19_22	chr6	-	1701	4	NIC	ENSMUSG00000032641.19	novel	498	4	NA	NA	-11	2	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	14.1656862405839	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGAATTGATTTACT	NA	False	NA	-21	True	ATTAAA	-14	NA	134864806	134846122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_134847446_134854179_134854298_134863853_134863900_134864592
ENSMUSG00000032641.19_24	chr6	-	1610	5	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	-10	3	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	26.3664085533089	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTGATTTACTTAGTTT	NA	False	NA	-15	True	ATTAAA	-20	NA	134874860	134846116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_134847407_134863853_134863900_134864592_134864749_134874124_134874177_134874794
ENSMUSG00000032641.19_3	chr6	-	1668	4	FSM	ENSMUSG00000032641.19	ENSMUST00000203762.4	498	4	-81	-1089	-17	2	multi-exon	FALSE	canonical	2	12	junction_1	13.9124245031395	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGAATTGATTTACT	NA	False	NA	-21	True	ATTAAA	-14	NA	134864812	134846122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_134847407_134854179_134854298_134863853_134863900_134864592
ENSMUSG00000032641.19_5	chr6	-	1499	2	ISM	ENSMUSG00000032641.19	ENSMUST00000111932.8	1711	5	10019	-2	-12	2	3prime_fragment	FALSE	canonical	3	94	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGAATTGATTTACT	NA	False	NA	-21	True	ATTAAA	-14	NA	134864807	134846122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_134847407_134864592
ENSMUSG00000032641.19_7	chr6	-	1543	2	ISM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	10009	52	-17	2	3prime_fragment	FALSE	canonical	3	36	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGAATTGATTTACT	NA	False	NA	-21	True	ATTAAA	-14	NA	134864812	134846122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_134847446_134864592
ENSMUSG00000032643.13_0	chr4	+	1697	6	FSM	ENSMUSG00000032643.13	ENSMUST00000038684.6	1664	6	-34	1	-15	-1	multi-exon	FALSE	canonical	1	2	junction_2	1.93907194296653	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACGGGCCCCGTGTATTT	NA	False	NA	3	True	AATAAA	-14	NA	124594478	124602403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124594645_124599405_124599583_124599676_124599852_124601046_124601217_124601309_124601524_124601608
ENSMUSG00000032648.15_0	chr19	+	2892	20	FSM	ENSMUSG00000032648.15	ENSMUST00000035269.15	2874	20	-22	4	-22	-4	multi-exon	TRUE	canonical	1	1	junction_8	7.04005162408672	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTCTTCTCTGTTGCAA	NA	False	NA	10	True	AATAAA	-20	NA	6434406	6448485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6434752_6435714_6435817_6435895_6435975_6436053_6436158_6436403_6436536_6438092_6438205_6438296_6438380_6438766_6438911_6439189_6439283_6439485_6439633_6439802_6439967_6440360_6440476_6440969_6441072_6441362_6441511_6442708_6442768_6442877_6443020_6443745_6443954_6447607_6447743_6447895_6447963_6448074
ENSMUSG00000032648.15_3	chr19	+	1951	13	ISM	ENSMUSG00000032648.15	ENSMUST00000113483.2	2583	18	4301	-2	-3995	2	3prime_fragment	FALSE	canonical	1	1	junction_1	7.61394918700028	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTTACTCTTCTCTGT	NA	False	NA	5	True	AATAAA	-15	NA	6438745	6448480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6438911_6439189_6439283_6439485_6439633_6439802_6439967_6440360_6440476_6440969_6441072_6441362_6441511_6442708_6442768_6442877_6443020_6443745_6443954_6447607_6447743_6447895_6447963_6448074
ENSMUSG00000032648.15_6	chr19	+	1649	9	ISM	ENSMUSG00000032648.15	ENSMUST00000113483.2	2583	18	5649	-2	-2647	2	3prime_fragment	FALSE	canonical	2	12	junction_2	5.3619026473818	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTTACTCTTCTCTGT	NA	False	NA	5	True	AATAAA	-15	NA	6440093	6448480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6440476_6440969_6441072_6441362_6441511_6442708_6442768_6442877_6443020_6443745_6443954_6447607_6447743_6447895_6447963_6448074
ENSMUSG00000032648.15_9	chr19	+	1944	12	ISM	ENSMUSG00000032648.15	ENSMUST00000113483.2	2583	18	4587	-2	-3709	2	3prime_fragment	FALSE	canonical	1	2	junction_3	7.02533784958606	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTTACTCTTCTCTGT	NA	False	NA	5	True	AATAAA	-15	NA	6439031	6448480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6439283_6439485_6439633_6439802_6439967_6440360_6440476_6440969_6441072_6441362_6441511_6442708_6442768_6442877_6443020_6443745_6443954_6447607_6447743_6447895_6447963_6448074
ENSMUSG00000032649.15_1	chr1	+	4051	12	FSM	ENSMUSG00000032649.15	ENSMUST00000044311.9	4093	12	40	2	40	-2	multi-exon	FALSE	canonical	0	0	junction_2	1.8227216050694	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCAGCCTGTGTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	152275620	152386444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_152276149_152344199_152344311_152347438_152347557_152348845_152348981_152360588_152360794_152365530_152365651_152371552_152371630_152375655_152375763_152378708_152378842_152379828_152379957_152382543_152382751_152384262
ENSMUSG00000032652.14_0	chr6	+	3551	5	FSM	ENSMUSG00000032652.14	ENSMUST00000046303.12	3629	5	68	10	-6	-10	multi-exon	FALSE	canonical	3	17	junction_3	2.06155281280883	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAATAACGTTCAGTTG	NA	False	NA	-2	True	AATAAA	-9	NA	134807184	134835884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_134807408_134826065_134826264_134828042_134828188_134829240_134829278_134832936
ENSMUSG00000032652.14_1	chr6	+	3337	4	FSM	ENSMUSG00000032652.14	ENSMUST00000111937.2	612	4	36	-2761	36	-10	multi-exon	FALSE	canonical	0	0	junction_2	9.41629792788369	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAATAACGTTCAGTTG	NA	False	NA	-2	True	AATAAA	-9	NA	134807253	134835884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_134807408_134826065_134826264_134829240_134829278_134832936
ENSMUSG00000032652.14_3	chr6	+	3186	3	ISM	ENSMUSG00000032652.14	ENSMUST00000111937.2	612	4	18845	-2761	-2058	-10	3prime_fragment	FALSE	canonical	0	0	junction_1	8.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAATAACGTTCAGTTG	NA	False	NA	-2	True	AATAAA	-9	NA	134826062	134835884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_134826264_134829240_134829278_134832936
ENSMUSG00000032652.14_4	chr6	+	1851	1	ISM	ENSMUSG00000032652.14	ENSMUST00000046303.12	3629	5	26920	7	5916	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAACGTTCAGTTGCCT	3002	False	NA	1	True	AATAAA	-12	NA	134834036	134835887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_134834000_134835900
ENSMUSG00000032656.15_0	chr18	-	1785	5	NIC	ENSMUSG00000032656.15	novel	860	4	NA	NA	-1	659	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTATTTTCTAATAATAAAT	NA	False	NA	NA	False	NA	NA	NA	57058588	56908264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_56909181_56916090_56916301_56940735_56940941_56944903_56945148_57058378
ENSMUSG00000032657.16_1	chr3	+	3093	12	NIC	ENSMUSG00000032657.16	novel	3083	12	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	7.00649049745371	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTGGAGTATTCTGTT	1708	False	NA	7	True	AATAAA	-18	NA	89090494	89096596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89091256_89091458_89091516_89091719_89091831_89091936_89092057_89092195_89092304_89092743_89092917_89093040_89093141_89094085_89094156_89094365_89094912_89095382_89095452_89095529_89095784_89095872
ENSMUSG00000032657.16_3	chr3	+	3104	12	FSM	ENSMUSG00000032657.16	ENSMUST00000041913.13	3083	12	-23	2	-23	0	multi-exon	FALSE	canonical	3	16	junction_5	4.5924839782964	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTGGAGTATTCTGTT	1700	False	NA	7	True	AATAAA	-18	NA	89090486	89096596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89091256_89091458_89091516_89091719_89091831_89091936_89092057_89092195_89092304_89092740_89092917_89093040_89093141_89094085_89094156_89094365_89094912_89095382_89095452_89095529_89095784_89095872
ENSMUSG00000032657.16_9	chr3	+	3171	11	NIC	ENSMUSG00000032657.16	novel	3083	12	NA	NA	-12	0	intron_retention	FALSE	canonical	3	16	junction_5	4.71274866717927	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTGGAGTATTCTGTT	1711	False	NA	7	True	AATAAA	-18	NA	89090497	89096596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89091256_89091458_89091516_89091719_89091831_89091936_89092057_89092195_89092304_89092740_89092917_89093040_89093141_89094085_89094156_89094365_89094912_89095382_89095784_89095872
ENSMUSG00000032661.10_1	chr5	-	2629	8	ISM	ENSMUSG00000032661.10	ENSMUST00000044833.9	4720	16	15896	2	-4110	-2	3prime_fragment	FALSE	canonical	1	3	junction_5	2.43276948084663	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTTCTTGGTTGTGA	7691	False	NA	NA	False	NA	NA	NA	120899830	120891164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_120892441_120892620_120892769_120894091_120894331_120894969_120895146_120896777_120897064_120897985_120898160_120899189_120899335_120899645
ENSMUSG00000032666.17_0	chr1	-	2636	1	ISM	ENSMUSG00000032666.17	ENSMUST00000044581.14	9559	6	202962	4	34064	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTCCTGGCTCTGTTCT	NA	False	NA	NA	False	ATTAAA	-12	NA	151762914	151760278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_151760300_151762900
ENSMUSG00000032666.17_1	chr1	-	1654	6	FSM	ENSMUSG00000032666.17	ENSMUST00000044581.14	9559	6	-157	8062	-157	317	multi-exon	FALSE	canonical	3	58	junction_2	7.73045923603508	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTTGTCTTCTCCCATTC	NA	False	NA	0	True	AATAAA	-20	NA	151966033	151768336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_151769184_151791232_151791294_151796797_151796875_151856176_151856272_151882295_151882519_151965682
ENSMUSG00000032667.18_0	chr6	-	1910	10	NIC	ENSMUSG00000032667.18	novel	2409	9	NA	NA	-15	-483	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	3.91893157523298	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAACTTATTTGTTTGTT	-6	True	NA	NA	False	AATAAA	-22	NA	5298345	5264629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_5265480_5266111_5266241_5266964_5267047_5268977_5269179_5272324_5272452_5273000_5273167_5277871_5277928_5278718_5278813_5289012_5289084_5298211
ENSMUSG00000032667.18_2	chr6	-	624	1	ISM	ENSMUSG00000032667.18	ENSMUST00000057792.9	2409	9	33204	481	15083	-481	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTTATTTGTTTGTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	5265251	5264627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_5264600_5265300
ENSMUSG00000032667.18_3	chr6	-	1830	9	FSM	ENSMUSG00000032667.18	ENSMUST00000057792.9	2409	9	98	481	-27	-481	multi-exon	FALSE	canonical	2	9	junction_7	2.57087047515039	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTTATTTGTTTGTTTG	-18	True	NA	NA	False	AATAAA	-24	NA	5298357	5264627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_5265480_5266111_5266241_5266964_5267047_5268977_5269179_5272324_5272452_5273000_5273167_5277871_5277928_5289012_5289084_5298211
ENSMUSG00000032673.6_1	chr11	-	896	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	15	7	13	-7	multi-exon	FALSE	canonical	3	382	junction_1	0	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTATTTCTTGTGTCTT	NA	False	NA	-8	True	AATAAA	-16	NA	29465018	29462882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_29463677_29464916
ENSMUSG00000032673.6_2	chr11	-	981	3	FSM	ENSMUSG00000032673.6	ENSMUST00000133103.2	2126	3	15	1130	15	-11	multi-exon	FALSE	canonical	3	43	junction_2	1	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTTTTTATTTCTTGTG	NA	False	NA	-12	True	AATAAA	-12	NA	29465016	29462886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_29463677_29464431_29464523_29464916
ENSMUSG00000032673.6_3	chr11	-	357	1	ISM	ENSMUSG00000032673.6	ENSMUST00000133103.2	2126	3	1792	1126	1792	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTATTTCTTGTGTCTT	NA	False	NA	-8	True	AATAAA	-16	NA	29463239	29462882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_29462900_29463200
ENSMUSG00000032679.13_2	chr2	+	1641	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	42	8	3	-3	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAAAAGCAGATTATCTT	NA	False	NA	NA	False	ATTAAA	-12	NA	103926187	103945691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032679.13_3	chr2	+	1754	5	FSM	ENSMUSG00000032679.13	ENSMUST00000168176.8	1806	5	52	0	13	0	multi-exon	FALSE	canonical	3	25	junction_1	94.0063162771524	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAGATTATCTTGAC	NA	False	NA	NA	False	ATTAAA	-15	NA	103926197	103945694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_103926273_103928069_103928190_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032679.13_6	chr2	+	2506	4	NIC	ENSMUSG00000032679.13	novel	1806	5	NA	NA	19	47	intron_retention	FALSE	canonical	3	43	junction_1	85.7943277068284	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACAAGAGGGAGGAGTTT	NA	False	NA	-1	True	AATAAA	-17	NA	103926203	103944655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_103928190_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032688.10_1	chr18	+	5057	17	FSM	ENSMUSG00000032688.10	ENSMUST00000224056.3	4113	17	52	-996	-18	-266	multi-exon	FALSE	canonical	3	12	junction_12	7.09643396361863	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGATGCCCAGTTTTTG	NA	False	NA	11	True	AATACA	-17	NA	65564060	65611872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_65564470_65570892_65571060_65577902_65578025_65580623_65580784_65581249_65581429_65581992_65582090_65582645_65582679_65584617_65584645_65586745_65586776_65591239_65591444_65595806_65595985_65597111_65597187_65597784_65597913_65603459_65603610_65606070_65606229_65608203_65608330_65609058
ENSMUSG00000032688.10_11	chr18	+	3926	8	ISM	ENSMUSG00000032688.10	ENSMUST00000049248.7	5331	16	27195	198	-316	-198	3prime_fragment	FALSE	canonical	3	12	junction_3	8.82251294665401	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATGAGTACTAGCTGAG	3095	False	NA	79	True	TATAAA	-9	NA	65591214	65611940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_65591444_65595806_65595985_65597111_65597187_65597784_65597913_65603459_65603610_65606070_65606229_65608203_65608330_65609058
ENSMUSG00000032688.10_12	chr18	+	3488	7	ISM	ENSMUSG00000032688.10	ENSMUST00000049248.7	5331	16	31948	246	4437	-246	3prime_fragment	FALSE	canonical	3	12	junction_2	8.82704178457691	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTTCTCTTGAAGACG	1782	False	NA	31	True	TATAAA	-16	NA	65595967	65611892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_65595985_65597111_65597187_65597784_65597913_65603459_65603610_65606070_65606229_65608203_65608330_65609058
ENSMUSG00000032688.10_14	chr18	+	2165	1	ISM	ENSMUSG00000032688.10	ENSMUST00000049248.7	5331	16	45690	264	6281	-264	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGCCCAGTTTTTGAT	NA	False	NA	13	True	AATACA	-19	NA	65609709	65611874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_65609700_65611900
ENSMUSG00000032688.10_20	chr18	+	3319	5	ISM	ENSMUSG00000032688.10	ENSMUST00000049248.7	5331	16	33815	273	-5594	-273	3prime_fragment	FALSE	canonical	3	22	junction_3	6.68487097856047	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTATTATAAAGATGCCCA	3649	False	NA	4	True	AATACA	-10	NA	65597834	65611865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_65597913_65603459_65603610_65606070_65606229_65608203_65608330_65609058
ENSMUSG00000032688.10_4	chr18	+	5138	18	NIC	ENSMUSG00000032688.10	novel	4113	17	NA	NA	8	-269	combination_of_known_junctions	FALSE	canonical	1	1	junction_11	9.86097126683064	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATAAAGATGCCCAGTTT	NA	False	NA	8	True	AATACA	-14	NA	65564040	65611869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_65564470_65570892_65571060_65577902_65578025_65580623_65580784_65581249_65581429_65581992_65582090_65582645_65582679_65584617_65584645_65586745_65586776_65591239_65591444_65592745_65592810_65595806_65595985_65597111_65597187_65597784_65597913_65603459_65603610_65606070_65606229_65608203_65608330_65609058
ENSMUSG00000032688.10_7	chr18	+	5198	19	NIC	ENSMUSG00000032688.10	novel	4113	17	NA	NA	-16	-266	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	11.5219864971066	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGATGCCCAGTTTTTG	NA	False	NA	11	True	AATACA	-17	NA	65564062	65611872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_65564470_65570892_65571060_65577902_65578025_65580623_65580784_65581249_65581429_65581992_65582090_65582645_65582679_65584617_65584645_65586745_65586776_65589827_65589907_65591239_65591444_65592745_65592810_65595806_65595985_65597111_65597187_65597784_65597913_65603459_65603610_65606070_65606229_65608203_65608330_65609058
ENSMUSG00000032688.10_8	chr18	+	4361	14	ISM	ENSMUSG00000032688.10	ENSMUST00000224056.3	4113	17	16615	-998	0	-264	3prime_fragment	FALSE	canonical	3	12	junction_9	7.50542210316952	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGCCCAGTTTTTGAT	235	False	NA	13	True	AATACA	-19	NA	65580623	65611874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_65580784_65581249_65581429_65581992_65582090_65582645_65582679_65584617_65584645_65586745_65586776_65591239_65591444_65595806_65595985_65597111_65597187_65597784_65597913_65603459_65603610_65606070_65606229_65608203_65608330_65609058
ENSMUSG00000032688.10_9	chr18	+	1964	12	ISM	ENSMUSG00000032688.10	ENSMUST00000224056.3	4113	17	17996	1048	49	428	3prime_fragment	FALSE	canonical	3	12	junction_7	8.06584473193412	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGCTTTTGTCCTGTTGT	272	False	NA	NA	False	NA	NA	NA	65582004	65609828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_65582090_65582645_65582679_65584617_65584645_65586745_65586776_65591239_65591444_65595806_65595985_65597111_65597187_65597784_65597913_65603459_65603610_65606070_65606229_65608203_65608330_65609058
ENSMUSG00000032690.17_0	chr5	-	2018	3	FSM	ENSMUSG00000032690.17	ENSMUST00000147941.2	2373	3	357	-2	357	0	multi-exon	FALSE	canonical	0	0	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCTGACTGTCCTGGAAC	NA	False	NA	NA	False	NA	NA	NA	120873283	120868398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_120870024_120871478_120871633_120873044
ENSMUSG00000032690.17_1	chr5	-	3409	9	ISM	ENSMUSG00000032690.17	ENSMUST00000053909.13	3869	11	3815	1	3815	0	3prime_fragment	FALSE	canonical	0	0	junction_2	0.82915619758885	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCTGACTGTCCTGGAAC	9056	False	NA	NA	False	NA	NA	NA	120884103	120868398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_120870024_120871478_120871633_120873044_120873284_120874061_120874250_120876359_120876643_120876734_120876909_120879213_120879359_120881109_120881349_120883741
ENSMUSG00000032698.16_0	chr2	+	1571	4	FSM	ENSMUSG00000032698.16	ENSMUST00000123437.8	848	4	55	-778	55	-4	multi-exon	FALSE	canonical	2	6	junction_1	3.85861230093008	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGCAGTGCTGTTCTTG	3935	False	NA	NA	False	AATAAA	-12	NA	103799927	103812215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_103800067_103800837_103801058_103806349_103806566_103811219
ENSMUSG00000032698.16_2	chr2	+	1634	4	FSM	ENSMUSG00000032698.16	ENSMUST00000111143.8	1654	4	36	-16	24	-3	multi-exon	FALSE	canonical	1	2	junction_1	5.71547606649408	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCAGTGCTGTTCTTGA	4517	False	NA	NA	False	AATAAA	-13	NA	103800509	103812216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_103800711_103800837_103801058_103806349_103806566_103811219
ENSMUSG00000032698.16_3	chr2	+	1696	3	FSM	ENSMUSG00000032698.16	ENSMUST00000111140.3	1706	3	7	3	7	-3	multi-exon	FALSE	canonical	3	13	junction_1	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCAGTGCTGTTCTTGA	4582	False	NA	NA	False	AATAAA	-13	NA	103800574	103812216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_103801058_103806349_103806566_103811219
ENSMUSG00000032702.17_0	chr19	+	5546	14	NNC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	-234	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	13.2338994508254	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	6	True	AATAAA	-15	NA	25214104	25411860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_25214357_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ENSMUSG00000032702.17_11	chr19	+	5516	13	NIC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	-8	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	25.6525935444266	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTGCCCCTGCTTC	NA	False	NA	5	True	AATAAA	-14	NA	25214330	25411859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_25214682_25252111_25252199_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ENSMUSG00000032702.17_21	chr19	+	5296	13	ISM	ENSMUSG00000032702.17	ENSMUST00000049400.15	5637	14	37771	0	37771	0	3prime_fragment	FALSE	canonical	3	47	junction_3	11.4078433057651	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	6	True	AATAAA	-15	NA	25252109	25411860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ENSMUSG00000032702.17_29	chr19	+	3856	10	ISM	ENSMUSG00000032702.17	ENSMUST00000049400.15	5637	14	173214	0	3490	0	3prime_fragment	FALSE	canonical	3	61	junction_1	8.84433277428107	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	3942	False	NA	6	True	AATAAA	-15	NA	25387552	25411860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ENSMUSG00000032702.17_3	chr19	+	5635	14	FSM	ENSMUSG00000032702.17	ENSMUST00000049400.15	5637	14	2	0	2	0	multi-exon	FALSE	canonical	3	26	junction_1	16.8104644783043	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	6	True	AATAAA	-15	NA	25214340	25411860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_25214682_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ENSMUSG00000032702.17_42	chr19	+	5207	12	ISM	ENSMUSG00000032702.17	ENSMUST00000049400.15	5637	14	81328	2	-77000	-2	3prime_fragment	FALSE	canonical	3	47	junction_2	11.63423275944	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGCTTGCCCCTGCTT	NA	False	NA	4	True	AATAAA	-13	NA	25295666	25411858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
ENSMUSG00000032705.10_0	chr12	+	3179	9	FSM	ENSMUSG00000032705.10	ENSMUST00000038185.10	3310	9	126	5	1	-5	multi-exon	FALSE	canonical	3	165	junction_6	24.0724816959116	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGCTCAGTGATTGTAA	2789	False	NA	17	True	AATAAA	-14	NA	80509994	80544891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
ENSMUSG00000032705.10_21	chr12	+	3121	8	ISM	ENSMUSG00000032705.10	ENSMUST00000038185.10	3310	9	12625	6	-360	-6	3prime_fragment	FALSE	canonical	3	165	junction_5	21.3999809269417	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAAGCTCAGTGATTGTA	3268	False	NA	16	True	AATAAA	-13	NA	80522493	80544890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
ENSMUSG00000032705.10_26	chr12	+	3458	2	FSM	ENSMUSG00000032705.10	ENSMUST00000219757.2	5245	2	-323	2110	-112	-5	multi-exon	FALSE	canonical	3	232	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGCTCAGTGATTGTAA	NA	False	NA	17	True	AATAAA	-14	NA	80537551	80544891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80539673_80543554
ENSMUSG00000032712.17_18	chr6	+	6091	6	FSM	ENSMUSG00000032712.17	ENSMUST00000100765.11	5356	6	-13	-722	5	-6	multi-exon	FALSE	canonical	3	26	junction_2	93.1227147370608	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACTACAGTTTAAGTC	NA	False	NA	1	True	AATAAA	-13	NA	149210958	149237150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_149211403_149211819_149211876_149226229_149226299_149226902_149231283_149232923_149233005_149236089
ENSMUSG00000032712.17_2	chr6	+	6165	7	NIC	ENSMUSG00000032712.17	novel	5356	6	NA	NA	5	-6	combination_of_known_junctions	FALSE	canonical	3	64	junction_3	80.8489675602327	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACTACAGTTTAAGTC	NA	False	NA	1	True	AATAAA	-13	NA	149210958	149237150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_149211403_149211819_149211876_149219132_149219207_149226229_149226299_149226902_149231283_149232923_149233005_149236089
ENSMUSG00000032712.17_3	chr6	+	6097	6	NIC	ENSMUSG00000032712.17	novel	5356	6	NA	NA	4	-6	combination_of_known_junctions	TRUE	canonical	3	39	junction_3	89.6852273231216	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACTACAGTTTAAGTC	NA	False	NA	1	True	AATAAA	-13	NA	149210957	149237150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_149211403_149211819_149211876_149219132_149219207_149226902_149231283_149232923_149233005_149236089
ENSMUSG00000032712.17_38	chr6	+	3266	3	ISM	ENSMUSG00000032712.17	ENSMUST00000046689.13	6066	5	18233	11	2203	-6	3prime_fragment	FALSE	canonical	3	234	junction_2	22	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACTACAGTTTAAGTC	NA	False	NA	1	True	AATAAA	-13	NA	149229158	149237150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_149231283_149232923_149233005_149236089
ENSMUSG00000032712.17_4	chr6	+	6007	5	FSM	ENSMUSG00000032712.17	ENSMUST00000189932.7	5269	5	-16	-722	2	-6	multi-exon	FALSE	canonical	3	27	junction_2	95.7405347802069	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACTACAGTTTAAGTC	NA	False	NA	1	True	AATAAA	-13	NA	149210955	149237150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_149211403_149211819_149211858_149226902_149231283_149232923_149233005_149236089
ENSMUSG00000032712.17_7	chr6	+	6154	7	NIC	ENSMUSG00000032712.17	novel	5356	6	NA	NA	-2	-6	combination_of_known_splicesites	FALSE	canonical	3	45	junction_2	89.5693399923583	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACTACAGTTTAAGTC	NA	False	NA	1	True	AATAAA	-13	NA	149210951	149237150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_149211403_149211819_149211858_149219132_149219207_149226229_149226299_149226902_149231283_149232923_149233005_149236089
ENSMUSG00000032712.17_8	chr6	+	6080	6	NIC	ENSMUSG00000032712.17	novel	5269	5	NA	NA	3	-6	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	99.8570978949419	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACTACAGTTTAAGTC	NA	False	NA	1	True	AATAAA	-13	NA	149210956	149237150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_149211403_149211819_149211858_149219132_149219207_149226902_149231283_149232923_149233005_149236089
ENSMUSG00000032712.17_9	chr6	+	6011	5	FSM	ENSMUSG00000032712.17	ENSMUST00000046689.13	6066	5	44	11	-2	-6	multi-exon	FALSE	canonical	3	27	junction_2	95.7405347802069	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACTACAGTTTAAGTC	NA	False	NA	1	True	AATAAA	-13	NA	149210969	149237150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_149211403_149211819_149211876_149226902_149231283_149232923_149233005_149236089
ENSMUSG00000032714.7_0	chr10	-	3246	8	FSM	ENSMUSG00000032714.7	ENSMUST00000040580.7	3288	8	39	3	39	-3	multi-exon	TRUE	canonical	3	17	junction_5	4.14039335605413	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCTGTGACTGAGTCCT	NA	False	NA	-2	True	AATAAA	-12	NA	78427759	78420339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_78421746_78421923_78422150_78422792_78422954_78423164_78423292_78424540_78424756_78424934_78425580_78425735_78426078_78427635
ENSMUSG00000032714.7_2	chr10	-	4666	6	NIC	ENSMUSG00000032714.7	novel	3288	8	NA	NA	49	-1	intron_retention	FALSE	canonical	3	19	junction_1	3.54400902933387	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGTGACTGAGTCCTTG	NA	False	NA	0	True	AATAAA	-14	NA	78427749	78420337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_78421746_78421923_78422150_78422792_78422954_78423164_78425580_78425735_78426078_78427635
ENSMUSG00000032714.7_6	chr10	-	3754	4	ISM	ENSMUSG00000032714.7	ENSMUST00000040580.7	3288	8	2675	1	2675	-1	intron_retention	FALSE	canonical	3	19	junction_1	3.09120616516523	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGTGACTGAGTCCTTG	2496	False	NA	0	True	AATAAA	-14	NA	78425123	78420337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_78421746_78421923_78422150_78422792_78422954_78423164
ENSMUSG00000032714.7_7	chr10	-	3406	7	NIC	ENSMUSG00000032714.7	novel	3288	8	NA	NA	58	-3	intron_retention	FALSE	canonical	3	19	junction_1	3.23608130649127	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCTGTGACTGAGTCCT	NA	False	NA	-2	True	AATAAA	-12	NA	78427740	78420339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_78421746_78421923_78422150_78422792_78422954_78423164_78423292_78424540_78425580_78425735_78426078_78427635
ENSMUSG00000032715.10_0	chr2	-	2003	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	15	8	15	-8	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	1225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAAACATCCTTGGTGA	NA	False	NA	-12	True	AATAAA	-21	NA	152185937	152179349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
ENSMUSG00000032715.10_3	chr2	-	1848	3	ISM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	703	4	641	-4	3prime_fragment	FALSE	canonical	3	930	junction_2	7	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACATCCTTGGTGACTTT	459	False	NA	-8	True	AATAAA	-25	NA	152185249	152179345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_152180608_152181634_152181928_152184956
ENSMUSG00000032717.15_1	chr17	-	907	2	ISM	ENSMUSG00000032717.15	ENSMUST00000113280.8	1281	4	12355	3	12283	-3	3prime_fragment	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCCCAGGACTCTTTAC	NA	False	NA	-5	True	AATAAA	-19	NA	48131811	48126255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_48127090_48131738
ENSMUSG00000032717.15_2	chr17	-	1543	4	ISM	ENSMUSG00000032717.15	ENSMUST00000035375.14	1371	5	47	-5	1	-3	3prime_fragment	FALSE	canonical	2	6	junction_1	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCCCAGGACTCTTTAC	2139	False	NA	-5	True	AATAAA	-19	NA	48144169	48126255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_48127090_48131738_48131967_48135472_48135653_48143868
ENSMUSG00000032717.15_4	chr17	-	1345	5	FSM	ENSMUSG00000032717.15	ENSMUST00000035375.14	1371	5	24	2	5	-2	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTCCATCTCCCCAGGAC	2116	False	NA	-12	True	AATAAA	-12	NA	48144192	48126262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_48127090_48131738_48131967_48135472_48135653_48143868_48143956_48144169
ENSMUSG00000032718.5_0	chr6	-	1873	3	ISM	ENSMUSG00000032718.5	ENSMUST00000047443.5	2376	4	10671	-2	10671	2	3prime_fragment	TRUE	canonical	3	7	junction_1	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGGATAGCTTTCAATT	NA	False	NA	NA	False	AATAAA	-23	NA	134598780	134586167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_134587815_134594279_134594421_134598695
ENSMUSG00000032718.5_2	chr6	-	2224	4	FSM	ENSMUSG00000032718.5	ENSMUST00000047443.5	2376	4	103	49	103	-49	multi-exon	FALSE	canonical	3	7	junction_1	3.09120616516523	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTCCTCCAATTAAATAT	NA	False	NA	NA	False	AATAAA	-16	NA	134609348	134586218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_134587815_134594279_134594421_134598695_134599013_134609178
ENSMUSG00000032724.6_0	chr2	+	4554	17	FSM	ENSMUSG00000032724.6	ENSMUST00000076212.4	4558	17	4	0	4	0	multi-exon	FALSE	canonical	2	10	junction_9	4.07546009672528	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGGCATCTGCTCCTGG	NA	False	NA	2	True	AATAAA	-16	NA	103396658	103548768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_103397955_103509089_103509237_103513622_103513837_103531115_103531269_103532600_103532767_103535397_103535488_103535975_103536078_103537921_103538019_103538424_103538561_103539624_103539852_103541020_103541200_103541492_103541599_103541789_103541893_103542731_103542823_103545847_103545917_103546384_103546499_103547504
ENSMUSG00000032726.13_0	chr4	-	5234	7	FSM	ENSMUSG00000032726.13	ENSMUST00000102641.10	1917	7	-130	-3187	-130	3187	multi-exon	FALSE	canonical	3	13	junction_2	3.09569593683445	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGTGCTGACACCCAGT	NA	False	NA	NA	False	AATAAA	-6	NA	123236726	123203250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_123207210_123209636_123209748_123210145_123210226_123210654_123210850_123218353_123218503_123218891_123219082_123236176
ENSMUSG00000032727.15_1	chr13	+	5129	13	FSM	ENSMUSG00000032727.15	ENSMUST00000109272.9	5279	13	148	2	0	1	multi-exon	FALSE	canonical	3	88	junction_1	13.5800098183568	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTGGGTCGTGTGACT	NA	False	NA	7	True	AATAAA	-15	NA	111822859	111855128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_111822889_111824361_111824387_111827769_111827916_111840162_111840298_111841755_111841877_111842535_111842622_111843171_111843248_111844747_111844900_111846259_111846342_111848219_111848315_111850774_111850903_111850978_111851122_111851217
ENSMUSG00000032727.15_15	chr13	+	5100	12	ISM	ENSMUSG00000032727.15	ENSMUST00000109272.9	5279	13	1648	4	327	-1	3prime_fragment	FALSE	canonical	3	97	junction_8	10.436743737139	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCCTGGGTCGTGTGA	NA	False	NA	5	True	AATAAA	-13	NA	111824359	111855126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_111824387_111827769_111827916_111840162_111840298_111841755_111841877_111842535_111842622_111843171_111843248_111844747_111844900_111846259_111846342_111848219_111848315_111850774_111850903_111850978_111851122_111851217
ENSMUSG00000032727.15_28	chr13	+	2936	1	ISM	ENSMUSG00000032727.15	ENSMUST00000109272.9	5279	13	29481	2	14874	1	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTGGGTCGTGTGACT	NA	False	NA	7	True	AATAAA	-15	NA	111852192	111855128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_111852200_111855100
ENSMUSG00000032727.15_7	chr13	+	4191	13	FSM	ENSMUSG00000032727.15	ENSMUST00000109271.3	4143	13	-41	-7	-15	7	multi-exon	FALSE	canonical	3	8	junction_9	33.2927878409457	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATCTGCTTTGCAATC	NA	False	NA	NA	False	ATTAAA	-21	NA	111822843	111854177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_111822889_111824361_111824387_111827769_111827916_111840162_111840298_111841755_111841877_111842535_111842622_111843171_111843248_111844747_111844900_111846259_111846342_111848222_111848315_111850774_111850903_111850978_111851122_111851217
ENSMUSG00000032733.7_0	chr9	-	4558	2	FSM	ENSMUSG00000032733.7	ENSMUST00000050916.7	4571	2	1	12	1	-12	multi-exon	FALSE	canonical	1	2	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTAGTGTAATAGAAGCA	NA	False	NA	NA	False	GATAAA	-12	NA	56835654	56824488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_56825989_56832596
ENSMUSG00000032737.14_1	chr7	-	4724	29	FSM	ENSMUSG00000032737.14	ENSMUST00000165052.8	4730	29	-16	22	-16	-8	multi-exon	FALSE	canonical	3	95	junction_28	22.1558429663829	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAATAAAGGAAAA	NA	False	NA	25	True	AATAAA	-14	NA	101487026	101471867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_101472611_101472719_101472854_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360_101478500_101478782_101478880_101479259_101479378_101479881_101480079_101480177_101480281_101480573_101480681_101480765_101480917_101481019_101481119_101481234_101481325_101481427_101481522_101481681_101481823_101482056_101482178_101482742_101482894_101482981_101483046_101485777_101486159_101486927
ENSMUSG00000032737.14_4	chr7	-	5271	29	NNC	ENSMUSG00000032737.14	novel	4730	29	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_28	28.1340631655664	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAATAAAGGAAAA	NA	False	NA	25	True	AATAAA	-14	NA	101487012	101471867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_101472611_101472719_101472854_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360_101478500_101478782_101478880_101479259_101479378_101479881_101480079_101480177_101480281_101480573_101480681_101480765_101480917_101481019_101481119_101481234_101481325_101481427_101481522_101481681_101481823_101482056_101482178_101482742_101482894_101482981_101483046_101485777_101486159_101486366
ENSMUSG00000032737.14_8	chr7	-	4589	28	NIC	ENSMUSG00000032737.14	novel	4730	29	NA	NA	-15	-8	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	36.3932567353139	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAATAAAGGAAAA	NA	False	NA	25	True	AATAAA	-14	NA	101487025	101471867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_101472611_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360_101478500_101478782_101478880_101479259_101479378_101479881_101480079_101480177_101480281_101480573_101480681_101480765_101480917_101481019_101481119_101481234_101481325_101481427_101481522_101481681_101481823_101482056_101482178_101482742_101482894_101482981_101483046_101485777_101486159_101486927
ENSMUSG00000032737.14_9	chr7	-	4613	28	ISM	ENSMUSG00000032737.14	ENSMUST00000165052.8	4730	29	864	22	26	-8	3prime_fragment	FALSE	canonical	3	134	junction_22	18.3629017075757	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAATAAAGGAAAA	NA	False	NA	25	True	AATAAA	-14	NA	101486146	101471867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_101472611_101472719_101472854_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360_101478500_101478782_101478880_101479259_101479378_101479881_101480079_101480177_101480281_101480573_101480681_101480765_101480917_101481019_101481119_101481234_101481325_101481427_101481522_101481681_101481823_101482056_101482178_101482742_101482894_101482981_101483046_101485777
ENSMUSG00000032740.18_1	chr11	+	7526	31	FSM	ENSMUSG00000032740.18	ENSMUST00000239407.2	6051	31	-724	-751	-34	751	multi-exon	TRUE	canonical	3	23	junction_26	14.1107130302555	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTTGGGAATTTGTATTT	NA	False	NA	NA	False	AATAAA	-14	NA	29323623	29455556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_29324411_29324506_29324608_29350183_29350293_29372539_29372610_29374771_29374831_29379332_29379417_29380111_29380253_29397895_29398069_29401021_29401104_29403118_29403278_29405369_29405517_29406457_29406603_29410848_29411034_29411710_29411849_29413119_29414191_29415610_29415739_29420314_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29447342_29447427_29448408_29448613_29449334_29449407_29450975_29451057_29453382_29453652_29453851
ENSMUSG00000032740.18_2	chr11	+	7387	30	ISM	ENSMUSG00000032740.18	ENSMUST00000040182.13	9376	32	19	5254	19	749	5prime_fragment	FALSE	canonical	3	45	junction_8	9.8353871035569	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACCTTGGGAATTTGTAT	NA	False	NA	NA	False	AATAAA	-12	NA	29323676	29455554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_29324411_29324506_29324608_29350183_29350293_29372539_29372610_29374771_29374831_29379332_29379417_29380111_29380253_29397895_29398069_29401021_29401104_29403118_29403278_29405369_29405517_29406457_29406603_29410848_29411034_29411710_29411849_29413119_29414191_29415610_29415739_29420314_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29448408_29448613_29449334_29449407_29450975_29451057_29453382_29453652_29453851
ENSMUSG00000032740.18_21	chr11	+	9430	33	NIC	ENSMUSG00000032740.18	novel	9376	32	NA	NA	28	-2	combination_of_known_junctions	FALSE	canonical	3	23	junction_26	14.8739495427408	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATTGTTACAGTCATT	NA	False	NA	NA	False	AATAAA	-19	NA	29323685	29460806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_29324411_29324506_29324608_29350183_29350293_29372539_29372610_29374771_29374831_29379332_29379417_29380111_29380253_29397895_29398069_29401021_29401104_29403118_29403278_29405369_29405517_29406457_29406603_29410848_29411034_29411710_29411849_29413119_29414191_29415610_29415739_29420314_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29447342_29447427_29448408_29448613_29449334_29449407_29450975_29451057_29453382_29453652_29453851_29454312_29457124_29457224_29457694
ENSMUSG00000032740.18_34	chr11	+	6844	18	ISM	ENSMUSG00000032740.18	ENSMUST00000040182.13	9376	32	89645	3	-585	-3	3prime_fragment	FALSE	canonical	3	30	junction_17	13.7722452956818	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAATTGTTACAGTCAT	NA	False	NA	NA	False	AATAAA	-18	NA	29413302	29460805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_29414191_29415610_29415739_29420314_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29448408_29448613_29449334_29449407_29450975_29451057_29453382_29453652_29453851_29454312_29457124_29457224_29457694
ENSMUSG00000032740.18_54	chr11	+	2849	1	ISM	ENSMUSG00000032740.18	ENSMUST00000040182.13	9376	32	134300	2	14028	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATTGTTACAGTCATT	1416	False	NA	NA	False	AATAAA	-19	NA	29457957	29460806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_29458000_29460800
ENSMUSG00000032740.18_6	chr11	+	9347	32	FSM	ENSMUSG00000032740.18	ENSMUST00000040182.13	9376	32	19	10	19	-10	multi-exon	FALSE	canonical	3	30	junction_31	11.5379300285811	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTTTAACAAATTGTTA	NA	False	NA	NA	False	AATAAA	-11	NA	29323676	29460798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_29324411_29324506_29324608_29350183_29350293_29372539_29372610_29374771_29374831_29379332_29379417_29380111_29380253_29397895_29398069_29401021_29401104_29403118_29403278_29405369_29405517_29406457_29406603_29410848_29411034_29411710_29411849_29413119_29414191_29415610_29415739_29420314_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29448408_29448613_29449334_29449407_29450975_29451057_29453382_29453652_29453851_29454312_29457124_29457224_29457694
ENSMUSG00000032740.18_61	chr11	+	5560	26	ISM	ENSMUSG00000032740.18	ENSMUST00000239407.2	6051	31	-669	6959	21	-14	5prime_fragment	FALSE	canonical	3	24	junction_25	12.709429570205	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACCCTTGAAAATGTTTG	NA	False	NA	NA	False	NA	NA	NA	29323678	29447846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_29324411_29324506_29324608_29350183_29350293_29372539_29372610_29374771_29374831_29379332_29379417_29380111_29380253_29397895_29398069_29401021_29401104_29403118_29403278_29405369_29405517_29406457_29406603_29410848_29411034_29411710_29411849_29413119_29414191_29415610_29415739_29420314_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29447342
ENSMUSG00000032741.10_11	chr5	-	2784	28	FSM	ENSMUSG00000032741.10	ENSMUST00000046426.10	4712	28	30	1898	30	-1898	multi-exon	FALSE	canonical	2	12	junction_13	5.06365515872966	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGTATGGGAACCATGTGT	9213	False	NA	NA	False	NA	NA	NA	120726708	120674115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_120674290_120675625_120675707_120675876_120676017_120677067_120677153_120677274_120677344_120677853_120677901_120678638_120678755_120679942_120680033_120680519_120680592_120681409_120681518_120682477_120682551_120683139_120683194_120683322_120683380_120685513_120685559_120685999_120686064_120686335_120686385_120687555_120687681_120687990_120688108_120691507_120691608_120691817_120691877_120692340_120692376_120693197_120693287_120693932_120694064_120694536_120694651_120695834_120696012_120698280_120698409_120723249_120723494_120726567
ENSMUSG00000032741.10_20	chr5	-	1275	1	ISM	ENSMUSG00000032741.10	ENSMUST00000046426.10	4712	28	53241	5	53162	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCGGCTGCAGCCTTTG	9940	False	NA	-4	True	AATAAA	-17	NA	120673497	120672222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_120672200_120673500
ENSMUSG00000032741.10_6	chr5	-	4373	26	ISM	ENSMUSG00000032741.10	ENSMUST00000046426.10	4712	28	28249	5	28170	-5	3prime_fragment	TRUE	canonical	2	12	junction_13	4.5740135548553	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCGGCTGCAGCCTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	120698489	120672222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_120674290_120675625_120675707_120675876_120676017_120677067_120677153_120677274_120677344_120677853_120677901_120678638_120678755_120679942_120680033_120680519_120680592_120681409_120681518_120682477_120682551_120683139_120683194_120683322_120683380_120685513_120685559_120685999_120686064_120686335_120686385_120687555_120687681_120687990_120688108_120691507_120691608_120691817_120691877_120692340_120692376_120693197_120693287_120693932_120694064_120694536_120694651_120695834_120696012_120698280
ENSMUSG00000032743.16_1	chr7	+	6082	27	FSM	ENSMUSG00000032743.16	ENSMUST00000124223.8	5874	27	32	-240	3	-5	multi-exon	FALSE	canonical	2	4	junction_1	5.03772748616398	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATAGAGTGTGGTACAC	NA	False	NA	NA	False	AATAAA	-11	NA	125307091	125473960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_125307121_125352144_125352222_125359472_125359643_125360923_125361022_125369743_125369876_125394387_125394653_125396745_125396878_125411951_125412122_125412764_125412831_125413952_125414060_125415750_125415854_125419139_125419356_125428900_125429039_125441751_125442626_125449470_125450176_125451108_125451318_125453731_125453811_125459699_125459878_125464416_125464583_125465497_125465656_125466774_125466840_125467910_125468022_125469814_125469955_125471322_125471425_125471858_125472020_125472103_125472193_125472618
ENSMUSG00000032743.16_12	chr7	+	1592	3	ISM	ENSMUSG00000032743.16	ENSMUST00000205462.2	4185	15	43020	5	7416	-5	3prime_fragment	FALSE	canonical	3	19	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATAGAGTGTGGTACAC	NA	False	NA	NA	False	AATAAA	-11	NA	125471858	125473960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_125472020_125472103_125472193_125472618
ENSMUSG00000032743.16_17	chr7	+	3173	13	ISM	ENSMUSG00000032743.16	ENSMUST00000205462.2	4185	15	20964	5	-10051	-5	3prime_fragment	FALSE	canonical	3	12	junction_7	4.85555237731907	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATAGAGTGTGGTACAC	5130	False	NA	NA	False	AATAAA	-11	NA	125449802	125473960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_125450176_125451108_125451318_125453731_125453811_125459699_125459878_125464416_125464583_125465497_125465656_125466774_125466840_125467910_125468022_125469814_125469955_125471322_125471425_125471858_125472020_125472103_125472193_125472618
ENSMUSG00000032743.16_3	chr7	+	6135	28	FSM	ENSMUSG00000032743.16	ENSMUST00000069660.13	6148	28	5	8	3	-8	multi-exon	FALSE	canonical	3	6	junction_1	4.90904934097212	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAGAATAGAGTGTGGTA	NA	False	NA	NA	False	AATAAA	-8	NA	125307091	125473957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_125307121_125327480_125327537_125352144_125352222_125359472_125359643_125360923_125361022_125369743_125369876_125394387_125394653_125396745_125396878_125411951_125412122_125412764_125412831_125413952_125414060_125415750_125415854_125419139_125419356_125428900_125429039_125441751_125442626_125449470_125450176_125451108_125451318_125453731_125453811_125459699_125459878_125464416_125464583_125465497_125465656_125466774_125466840_125467910_125468022_125469814_125469955_125471322_125471425_125471858_125472020_125472103_125472193_125472618
ENSMUSG00000032743.16_4	chr7	+	4128	19	NIC	ENSMUSG00000032743.16	novel	5874	27	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	5.63279638028292	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCGCTCGAGCTTCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	125307091	125461166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_125307121_125352144_125352222_125359472_125359643_125360923_125361022_125369743_125369876_125394387_125394653_125396745_125396878_125411951_125412122_125412764_125412831_125413952_125414060_125415750_125415854_125419139_125419356_125428900_125429039_125441751_125442626_125449470_125450176_125451108_125451318_125453731_125453811_125459699_125459878_125460786
ENSMUSG00000032743.16_6	chr7	+	4222	20	NIC	ENSMUSG00000032743.16	novel	6148	28	NA	NA	-7	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	5.38902136259798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGCGCTCGAGCTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	125307052	125461165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_125307121_125327480_125327537_125352144_125352222_125359472_125359643_125360923_125361022_125369743_125369876_125394387_125394653_125396745_125396878_125411951_125412122_125412764_125412831_125413952_125414060_125415750_125415854_125419139_125419356_125428900_125429039_125441751_125442626_125449470_125450176_125451108_125451318_125453731_125453811_125459699_125459878_125460786
ENSMUSG00000032743.16_7	chr7	+	5353	1	FSM	ENSMUSG00000032743.16	ENSMUST00000205723.2	10079	1	37	4689	37	-4689	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCGCGTGTCTGCTCTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	125307125	125312478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_125307100_125312500
ENSMUSG00000032743.16_8	chr7	+	5098	20	ISM	ENSMUSG00000032743.16	ENSMUST00000069660.13	6148	28	104946	5	-16806	-5	3prime_fragment	FALSE	canonical	3	8	junction_5	4.76889738529444	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATAGAGTGTGGTACAC	NA	False	NA	NA	False	AATAAA	-11	NA	125412032	125473960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_125412122_125412764_125412831_125413952_125414060_125415750_125415854_125419139_125419356_125428900_125429039_125441751_125442626_125449470_125450176_125451108_125451318_125453731_125453811_125459699_125459878_125464416_125464583_125465497_125465656_125466774_125466840_125467910_125468022_125469814_125469955_125471322_125471425_125471858_125472020_125472103_125472193_125472618
ENSMUSG00000032745.19_0	chr13	-	2946	13	FSM	ENSMUSG00000032745.19	ENSMUST00000047627.14	3694	13	267	481	184	-3	multi-exon	FALSE	canonical	3	874	junction_7	122.771100245765	1281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTTCTGTCTTAAAATG	NA	False	NA	-5	True	AATAAA	-20	NA	111626378	111562694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
ENSMUSG00000032745.19_3	chr13	-	2886	12	FSM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	184	229	184	-3	multi-exon	FALSE	canonical	3	389	junction_6	235.263031976713	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTTCTGTCTTAAAATG	NA	False	NA	-5	True	AATAAA	-20	NA	111626378	111562694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
ENSMUSG00000032750.14_0	chrX	-	1652	3	FSM	ENSMUSG00000032750.14	ENSMUST00000127024.2	750	3	-25	-877	-25	-62	multi-exon	FALSE	canonical	3	11	junction_2	2	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCTTTTGTTGTTGTTC	2154	False	NA	NA	False	TATAAA	-18	NA	74012756	74010510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_74011592_74011767_74011897_74012314
ENSMUSG00000032754.15_0	chr5	+	2872	16	FSM	ENSMUSG00000032754.15	ENSMUST00000068326.14	2898	16	24	2	24	2	multi-exon	FALSE	non_canonical	0	0	junction_5	54.5084702897938	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGAAGAGTCCCACAGG	20	True	NA	4	True	AATAAA	-20	NA	120649256	120672087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ENSMUSG00000032754.15_38	chr5	+	2776	15	ISM	ENSMUSG00000032754.15	ENSMUST00000068326.14	2898	16	1957	1	-18	-1	3prime_fragment	FALSE	non_canonical	0	0	junction_4	56.2808192215154	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGAAGAGTCCCACAGGG	1848	False	NA	5	True	AATAAA	-21	NA	120651189	120672088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ENSMUSG00000032754.15_4	chr5	+	2535	13	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	28	2	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_5	57.0079794609686	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGAAGAGTCCCACAGG	24	False	NA	4	True	AATAAA	-20	NA	120649260	120672087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ENSMUSG00000032754.15_41	chr5	+	2633	13	ISM	ENSMUSG00000032754.15	ENSMUST00000076051.12	2661	14	1866	-2	-25	2	3prime_fragment	FALSE	non_canonical	0	0	junction_4	66.1467224349694	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGAAGAGTCCCACAGG	1841	False	NA	4	True	AATAAA	-20	NA	120651182	120672087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120670924
ENSMUSG00000032754.15_45	chr5	+	2439	12	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	-16	1	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_4	59.5266451902281	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACCAGAAGAGTCCCACAG	1850	False	NA	3	True	AATAAA	-19	NA	120651191	120672086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ENSMUSG00000032754.15_8	chr5	+	2718	14	FSM	ENSMUSG00000032754.15	ENSMUST00000076051.12	2661	14	-56	-1	28	1	multi-exon	FALSE	non_canonical	0	0	junction_5	64.1450833343938	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACCAGAAGAGTCCCACAG	24	False	NA	3	True	AATAAA	-19	NA	120649260	120672086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120670924
ENSMUSG00000032757.7_0	chr6	-	1460	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	34	22	-8	-22	multi-exon	FALSE	canonical	3	308	junction_1	40.3016404408335	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGTTTATAACTTCCTT	-1	True	NA	-22	True	AATACA	-11	NA	4086938	4076920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
ENSMUSG00000032757.7_2	chr6	-	3089	4	NIC	ENSMUSG00000032757.7	novel	1516	4	NA	NA	-8	-11	combination_of_known_junctions	FALSE	canonical	1	5	junction_2	168.752942361179	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCCTTAAGTGTTGTGT	-1	True	NA	-11	True	ATTAAA	-11	NA	4086938	4076909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_4078037_4079960_4081636_4082457_4082583_4086776
ENSMUSG00000032757.7_4	chr6	-	3905	3	NIC	ENSMUSG00000032757.7	novel	1516	4	NA	NA	-10	-19	intron_retention	FALSE	canonical	3	308	junction_1	46	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTATAACTTCCTTAAG	-3	True	NA	-19	True	ATTAAA	-3	NA	4086940	4076917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_4078037_4079960_4082583_4086776
ENSMUSG00000032763.12_0	chr10	+	2268	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	-18	4	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	41.9345521815444	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAATCTGTGTATACTGG	5357	False	NA	24	True	AATAAA	-33	NA	78410291	78420330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_78410403_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ENSMUSG00000032763.12_24	chr10	+	2334	14	FSM	ENSMUSG00000032763.12	ENSMUST00000218215.2	2331	14	1	-4	1	4	multi-exon	FALSE	canonical	3	132	junction_8	17.1491887433841	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAATCTGTGTATACTGG	5895	False	NA	24	True	AATAAA	-33	NA	78410829	78420330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711
ENSMUSG00000032763.12_6	chr10	+	2214	15	FSM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	36	-17	7	4	multi-exon	FALSE	canonical	3	132	junction_8	19.815990244945	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAATCTGTGTATACTGG	5929	False	NA	24	True	AATAAA	-33	NA	78410863	78420330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ENSMUSG00000032763.12_8	chr10	+	2483	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	9	4	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	39.9503024602651	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAATCTGTGTATACTGG	5408	False	NA	24	True	AATAAA	-33	NA	78410342	78420330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_78410669_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ENSMUSG00000032763.12_9	chr10	+	2314	16	FSM	ENSMUSG00000032763.12	ENSMUST00000105384.5	2329	16	11	4	11	-2	multi-exon	FALSE	canonical	3	14	junction_1	41.9345521815444	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGTGTATACTGGTT	5410	False	NA	26	True	AATAAA	-35	NA	78410344	78420332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_78410500_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ENSMUSG00000032769.6_0	chr1	-	4284	27	FSM	ENSMUSG00000032769.6	ENSMUST00000041447.5	4263	27	-17	-4	-17	4	multi-exon	FALSE	canonical	1	1	junction_1	2.09712398157163	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGGGACAGCAGTATGCA	NA	False	NA	NA	False	AATAAA	-24	NA	14989103	14942867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_14943953_14944587_14944686_14946072_14946184_14950422_14950492_14951820_14952004_14952335_14952466_14954333_14954504_14955973_14956064_14957110_14957277_14957818_14957890_14959617_14959717_14960618_14960679_14961528_14961623_14963406_14963574_14966715_14966831_14968232_14968398_14968479_14968650_14969570_14969672_14970288_14970389_14972085_14972135_14973369_14973507_14974370_14974517_14974676_14974786_14976146_14976255_14980953_14981130_14982583_14982744_14988948
ENSMUSG00000032776.10_1	chr7	-	4353	23	FSM	ENSMUSG00000032776.10	ENSMUST00000079323.8	5802	23	-28	1477	-28	1106	multi-exon	FALSE	canonical	1	1	junction_22	2.92220057462644	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTGTCATCTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	71956384	71729054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_71730606_71732834_71732933_71739918_71740029_71752891_71753002_71771445_71771488_71776885_71777009_71810887_71811008_71812945_71813021_71814357_71814460_71833552_71833656_71835510_71835614_71850093_71850188_71852036_71852224_71861342_71861474_71863691_71863857_71873768_71873805_71877727_71877840_71878219_71878297_71879075_71879219_71895208_71895318_71896855_71896919_71908846_71909380_71956218
ENSMUSG00000032777.10_0	chr7	-	6881	37	FSM	ENSMUSG00000032777.10	ENSMUST00000055506.9	6961	37	77	3	-26	-3	multi-exon	FALSE	canonical	3	171	junction_34	23.9112782676933	301	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACGTTGTGTATTGGCCTA	NA	False	NA	-2	True	ATTAAA	-13	NA	125306875	125240128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_125240906_125241618_125241812_125242497_125242538_125243045_125243545_125244686_125244977_125245645_125245906_125246511_125246800_125247568_125247742_125250234_125250329_125251034_125251098_125253638_125253752_125255015_125255098_125256657_125256801_125258228_125258387_125261430_125261620_125261748_125261828_125262130_125262267_125262579_125262719_125266195_125266374_125266483_125266581_125267165_125267264_125268025_125268172_125268320_125268591_125268754_125268940_125269646_125269751_125271856_125272011_125273228_125273366_125275654_125275858_125276472_125276789_125277997_125278114_125280273_125280436_125292310_125292435_125295632_125295730_125298120_125298265_125298515_125298693_125303002_125303213_125306628
ENSMUSG00000032782.20_30	chr11	-	4257	18	NIC	ENSMUSG00000032782.20	novel	3861	19	NA	NA	-18	-10	intron_retention	TRUE	canonical	3	88	junction_14	16.0401744763526	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAATGTTTAATGTTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	69214619	69190322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213515
ENSMUSG00000032782.20_5	chr11	-	3867	19	FSM	ENSMUSG00000032782.20	ENSMUST00000092973.6	3861	19	-36	30	-36	23	multi-exon	FALSE	canonical	3	88	junction_15	16.162847964421	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAGAGTAAATTATTG	NA	False	NA	NA	False	NA	NA	NA	69214637	69190342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213515
ENSMUSG00000032782.20_7	chr11	-	3882	19	NNC	ENSMUSG00000032782.20	novel	3861	19	NA	NA	-26	-14	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_18	27.2352009876833	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGTATAAATGTTTAATGT	NA	False	NA	NA	False	AATAAA	-11	NA	69214627	69190326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213506
ENSMUSG00000032783.10_0	chr15	+	2220	14	FSM	ENSMUSG00000032783.10	ENSMUST00000230054.2	2639	14	417	2	5	0	multi-exon	FALSE	canonical	3	25	junction_1	17.6655315775427	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGGCAGCCAGTGCTGT	NA	False	NA	12	True	AATAAA	-21	NA	98972872	98981288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_98972949_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
ENSMUSG00000032783.10_1	chr15	+	2242	14	FSM	ENSMUSG00000032783.10	ENSMUST00000039665.8	2255	14	15	-2	6	2	multi-exon	FALSE	canonical	3	68	junction_1	8.88852727732572	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGGGGCAGCCAGTGCT	NA	False	NA	10	True	AATAAA	-19	NA	98972873	98981286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
ENSMUSG00000032783.10_13	chr15	+	2507	13	NIC	ENSMUSG00000032783.10	novel	2255	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	68	junction_9	8.01387685344754	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGGCAGCCAGTGCTGT	NA	False	NA	12	True	AATAAA	-21	NA	98972867	98981288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
ENSMUSG00000032783.10_8	chr15	+	2443	13	NIC	ENSMUSG00000032783.10	novel	2255	14	NA	NA	10	0	intron_retention	FALSE	canonical	3	68	junction_1	8.33166649996666	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGGCAGCCAGTGCTGT	NA	False	NA	12	True	AATAAA	-21	NA	98972877	98981288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980984_98981108
ENSMUSG00000032786.17_0	chr9	-	2172	11	FSM	ENSMUSG00000032786.17	ENSMUST00000141118.9	3399	11	749	478	-35	6	multi-exon	TRUE	canonical	3	139	junction_7	18.0612845611822	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGTAAAATCATAGTCCTG	8527	False	NA	-23	True	AATAAA	-22	NA	106125104	106111134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106111397_106112586_106112750_106113638_106113908_106115273_106115439_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
ENSMUSG00000032788.16_0	chr10	-	2591	1	ISM	ENSMUSG00000032788.16	ENSMUST00000041616.15	5124	11	25637	4	8908	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCTTAGTGTGGTCAT	7958	False	NA	-6	True	AATAAA	-13	NA	78275172	78272581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_78272600_78275200
ENSMUSG00000032788.16_1	chr10	-	5066	11	FSM	ENSMUSG00000032788.16	ENSMUST00000041616.15	5124	11	47	11	47	-11	multi-exon	TRUE	canonical	3	285	junction_4	40.3910881259715	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGCAGTTGTCTTAGTG	6849	False	NA	-13	True	AATAAA	-6	NA	78300762	78272588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783_78282830_78283728_78283815_78285063_78285111_78286116_78286201_78287312_78287418_78289307_78289363_78300594
ENSMUSG00000032796.9_0	chr17	+	9509	63	FSM	ENSMUSG00000032796.9	ENSMUST00000035471.9	9526	63	6	11	0	-11	multi-exon	TRUE	canonical	3	108	junction_11	42.4970342357505	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCAGTGGAATTAATGGTC	NA	False	NA	11	True	ATTAAA	-11	NA	68004259	68129631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_68004412_68023688_68023860_68024156_68024270_68044468_68044712_68045705_68045886_68049019_68049110_68050269_68050388_68052040_68052220_68052844_68052951_68053742_68053904_68055038_68055180_68057511_68057686_68059376_68059479_68059772_68059985_68060745_68060858_68063661_68063773_68068597_68068726_68070765_68070853_68071624_68071837_68073947_68074055_68074379_68074561_68075294_68075432_68076374_68076612_68077950_68078095_68079656_68079837_68080681_68080868_68081458_68081587_68082765_68082887_68083902_68084041_68086043_68086166_68087523_68087611_68087873_68088068_68089014_68089158_68090988_68091079_68092045_68092158_68092992_68093156_68097813_68098022_68098204_68098322_68098439_68098604_68101189_68101326_68102194_68102289_68103691_68103809_68105521_68105705_68105977_68106133_68107753_68107898_68109890_68110025_68111394_68111546_68112356_68112482_68114772_68114924_68116205_68116351_68116834_68116977_68117064_68117180_68117324_68117496_68118433_68118586_68119320_68119507_68120847_68120984_68122172_68122286_68122849_68123040_68123997_68124157_68124521_68124676_68125578_68125713_68128512_68128736_68129283
ENSMUSG00000032796.9_48	chr17	+	5679	38	ISM	ENSMUSG00000032796.9	ENSMUST00000035471.9	9526	63	76484	7	-38663	-7	3prime_fragment	FALSE	canonical	3	115	junction_1	38.3139352365296	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGAATTAATGGTCTCCT	NA	False	NA	15	True	ATTAAA	-15	NA	68080737	68129635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_68080868_68081458_68081587_68082765_68082887_68083902_68084041_68086043_68086166_68087523_68087611_68087873_68088068_68089014_68089158_68090988_68091079_68092045_68092158_68092992_68093156_68097813_68098022_68098204_68098322_68098439_68098604_68101189_68101326_68102194_68102289_68103691_68103809_68105521_68105705_68105977_68106133_68107753_68107898_68109890_68110025_68111394_68111546_68112356_68112482_68114772_68114924_68116205_68116351_68116834_68116977_68117064_68117180_68117324_68117496_68118433_68118586_68119320_68119507_68120847_68120984_68122172_68122286_68122849_68123040_68123997_68124157_68124521_68124676_68125578_68125713_68128512_68128736_68129283
ENSMUSG00000032796.9_79	chr17	+	3320	21	ISM	ENSMUSG00000032796.9	ENSMUST00000035471.9	9526	63	101359	11	-13788	-11	3prime_fragment	FALSE	canonical	3	165	junction_2	28.355951756201	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCAGTGGAATTAATGGTC	NA	False	NA	11	True	ATTAAA	-11	NA	68105612	68129631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_68105705_68105977_68106133_68107753_68107898_68109890_68110025_68111394_68111546_68112356_68112482_68114772_68114924_68116205_68116351_68116834_68116977_68117064_68117180_68117324_68117496_68118433_68118586_68119320_68119507_68120847_68120984_68122172_68122286_68122849_68123040_68123997_68124157_68124521_68124676_68125578_68125713_68128512_68128736_68129283
ENSMUSG00000032796.9_83	chr17	+	2879	18	ISM	ENSMUSG00000032796.9	ENSMUST00000035471.9	9526	63	105687	11	-9460	-11	3prime_fragment	FALSE	canonical	3	171	junction_2	25.8207823810234	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCAGTGGAATTAATGGTC	NA	False	NA	11	True	ATTAAA	-11	NA	68109940	68129631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_68110025_68111394_68111546_68112356_68112482_68114772_68114924_68116205_68116351_68116834_68116977_68117064_68117180_68117324_68117496_68118433_68118586_68119320_68119507_68120847_68120984_68122172_68122286_68122849_68123040_68123997_68124157_68124521_68124676_68125578_68125713_68128512_68128736_68129283
ENSMUSG00000032802.9_0	chr2	+	2417	2	FSM	ENSMUSG00000032802.9	ENSMUST00000137751.2	446	2	171	-2142	163	-23	multi-exon	FALSE	canonical	3	20	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACACACCATGCAATAGCC	NA	False	NA	8	True	NA	NA	NA	151947606	151953273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_151947659_151950908
ENSMUSG00000032802.9_1	chr2	+	2581	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	206	25	206	-25	multi-exon	FALSE	canonical	3	134	junction_1	0	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACACACCATGCAATAG	NA	False	NA	6	True	NA	NA	NA	151947649	151953271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_151947868_151950908
ENSMUSG00000032802.9_3	chr2	+	1948	1	ISM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	3884	21	3884	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACACCATGCAATAGCCTT	NA	False	NA	10	True	NA	NA	NA	151951327	151953275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_151951300_151953300
ENSMUSG00000032803.16_1	chr9	-	3913	5	FSM	ENSMUSG00000032803.16	ENSMUST00000072249.13	3787	5	-126	0	-45	0	multi-exon	FALSE	canonical	3	423	junction_1	33.7740654941036	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGATGGTGGAATGTGAT	NA	False	NA	-12	True	AATAAA	-10	NA	103242863	103230306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_103233229_103233478_103233639_103237074_103237218_103241173_103241251_103242252
ENSMUSG00000032803.16_10	chr9	-	3907	5	FSM	ENSMUSG00000032803.16	ENSMUST00000189875.8	554	5	-537	-2816	-45	0	multi-exon	TRUE	canonical	3	42	junction_2	179.509052696514	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGATGGTGGAATGTGAT	NA	False	NA	-12	True	AATAAA	-10	NA	103242863	103230306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_103233229_103233478_103233633_103237074_103237218_103241173_103241251_103242252
ENSMUSG00000032803.16_2	chr9	-	3911	5	FSM	ENSMUSG00000032803.16	ENSMUST00000189896.2	1023	5	-46	-2842	-46	0	multi-exon	FALSE	canonical	3	61	junction_1	184.859913177519	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGATGGTGGAATGTGAT	NA	False	NA	-12	True	AATAAA	-10	NA	103242864	103230306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_103233226_103233478_103233639_103237074_103237218_103241173_103241251_103242252
ENSMUSG00000032803.16_3	chr9	-	1933	1	ISM	ENSMUSG00000032803.16	ENSMUST00000035484.11	3387	5	10800	14	9857	0	mono-exon	FALSE	NA	NA	NA	NA	NA	316	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGATGGTGGAATGTGAT	NA	False	NA	-12	True	AATAAA	-10	NA	103232239	103230306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_103230300_103232200
ENSMUSG00000032803.16_4	chr9	-	3192	5	FSM	ENSMUSG00000032803.16	ENSMUST00000035484.11	3387	5	181	14	-40	0	multi-exon	FALSE	canonical	3	85	junction_1	174.534201519358	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGATGGTGGAATGTGAT	NA	False	NA	-12	True	AATAAA	-10	NA	103242858	103230306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_103232513_103233478_103233639_103237074_103237218_103241173_103241251_103242252
ENSMUSG00000032806.14_0	chrX	-	1419	1	NIC	ENSMUSG00000032806.14	novel	1708	2	NA	NA	350	-26	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAACCAAAAAA	NA	False	NA	NA	False	AATATA	-5	NA	73414267	73412848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_73412800_73414300
ENSMUSG00000032807.6_0	chr11	+	555	4	ISM	ENSMUSG00000032807.6	ENSMUST00000036424.3	2431	15	10452	1	10452	-1	3prime_fragment	FALSE	canonical	3	17	junction_3	8.17856276425687	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGGTCTGAGAACGTGGG	NA	False	NA	6	True	AATAAA	-17	NA	69058266	69060617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_69058304_69059603_69059705_69060043_69060215_69060371
ENSMUSG00000032807.6_1	chr11	+	2525	15	FSM	ENSMUSG00000032807.6	ENSMUST00000036424.3	2431	15	-95	1	-95	-1	multi-exon	FALSE	canonical	0	0	junction_2	11.3227241259625	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGGTCTGAGAACGTGGG	1810	False	NA	6	True	AATAAA	-17	NA	69047719	69060617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69048220_69049099_69049305_69053493_69053576_69053718_69053812_69053946_69054070_69054333_69054438_69054752_69054926_69055157_69055302_69056676_69056881_69057055_69057143_69057599_69057770_69058181_69058304_69059603_69059705_69060043_69060215_69060371
ENSMUSG00000032812.19_0	chr7	+	5112	34	FSM	ENSMUSG00000032812.19	ENSMUST00000107010.9	5147	34	32	3	32	3	multi-exon	FALSE	canonical	3	35	junction_3	24.8085044217444	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGTGCTGAGGCCTGTG	NA	False	NA	15	True	TATAAA	-20	NA	100997305	101061098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100997407_101016227_101016306_101022162_101022709_101034068_101034248_101034758_101034824_101035355_101035481_101035598_101035749_101035996_101036067_101036312_101036434_101037193_101037397_101037820_101037928_101039270_101039471_101041042_101041129_101042653_101042837_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
ENSMUSG00000032812.19_22	chr7	+	4220	30	ISM	ENSMUSG00000032812.19	ENSMUST00000084895.12	4404	31	7350	-147	-68	3	3prime_fragment	FALSE	canonical	3	63	junction_1	19.9627477085721	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGTGCTGAGGCCTGTG	NA	False	NA	15	True	TATAAA	-20	NA	101034746	101061098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101034824_101035355_101035481_101035598_101035749_101035996_101036067_101036312_101036434_101037193_101037397_101037820_101037928_101039270_101039471_101041042_101041129_101042653_101042837_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
ENSMUSG00000032812.19_25	chr7	+	4137	29	ISM	ENSMUSG00000032812.19	ENSMUST00000084895.12	4404	31	7966	-148	548	-2	3prime_fragment	FALSE	canonical	3	79	junction_2	18.9277290917698	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTGCTGAGGCCTGTGA	NA	False	NA	16	True	TATAAA	-21	NA	101035362	101061099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101035481_101035598_101035749_101035996_101036067_101036312_101036434_101037193_101037397_101037820_101037928_101039270_101039471_101041042_101041129_101042653_101042837_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
ENSMUSG00000032812.19_29	chr7	+	3232	23	ISM	ENSMUSG00000032812.19	ENSMUST00000084895.12	4404	31	12010	-148	-4168	-2	3prime_fragment	FALSE	canonical	3	86	junction_1	17.3460167623769	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTGCTGAGGCCTGTGA	NA	False	NA	16	True	TATAAA	-21	NA	101039406	101061099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101039471_101041042_101041129_101042653_101042837_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
ENSMUSG00000032812.19_31	chr7	+	2977	21	FSM	ENSMUSG00000032812.19	ENSMUST00000098243.4	3693	21	22	694	22	-2	multi-exon	FALSE	canonical	3	23	junction_1	25.1838738084513	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTGCTGAGGCCTGTGA	NA	False	NA	16	True	TATAAA	-21	NA	101043596	101061099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101043675_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
ENSMUSG00000032815.17_3	chr8	-	4467	43	FSM	ENSMUSG00000032815.17	ENSMUST00000035495.15	4485	43	14	4	-2	-3	multi-exon	TRUE	canonical	3	94	junction_17	20.5305065860605	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATCTGTGTCTGGCCTTA	NA	False	NA	-8	True	AAGAAA	-13	NA	124045301	123995042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123995289_123995483_123995577_123995681_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001075_124001136_124001206_124001313_124001870_124002044_124004998_124005084_124007930_124008060_124009356_124009431_124010747_124010925_124013208_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
ENSMUSG00000032815.17_33	chr8	-	4383	42	NIC	ENSMUSG00000032815.17	novel	4485	43	NA	NA	2	-3	combination_of_known_splicesites	FALSE	canonical	2	15	junction_38	27.438124646495	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATCTGTGTCTGGCCTTA	NA	False	NA	-8	True	AAGAAA	-13	NA	124045313	123995042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_123995289_123995483_123995577_123995681_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001075_124001136_124001206_124001313_124001870_124002044_124004998_124005084_124007930_124008060_124009356_124009431_124010747_124010925_124013208_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039978_124040113_124043101_124043196_124044800_124044911_124045213
ENSMUSG00000032816.16_1	chr9	+	6218	20	FSM	ENSMUSG00000032816.16	ENSMUST00000035499.5	6223	20	3	2	3	-2	multi-exon	TRUE	canonical	1	1	junction_1	4.95240505103063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACATGTTGCTCTCTCTCT	NA	False	NA	2	True	AATAAA	-10	NA	65008770	65045220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65008881_65020540_65020895_65021581_65021724_65027499_65027637_65029061_65029203_65029932_65030089_65031057_65031472_65031893_65032059_65032566_65032705_65034036_65034211_65035749_65035987_65036061_65036164_65037844_65038029_65038625_65038754_65038890_65039062_65039207_65039346_65040332_65040439_65040921_65041151_65041754_65041920_65042393
ENSMUSG00000032816.16_18	chr9	+	3064	3	ISM	ENSMUSG00000032816.16	ENSMUST00000213533.2	6220	20	32311	2	32262	-2	3prime_fragment	FALSE	canonical	3	8	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACATGTTGCTCTCTCTCT	8300	False	NA	2	True	AATAAA	-10	NA	65041078	65045220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_65041151_65041754_65041920_65042393
ENSMUSG00000032816.16_2	chr9	+	4373	10	ISM	ENSMUSG00000032816.16	ENSMUST00000213533.2	6220	20	26896	2	26847	-2	3prime_fragment	FALSE	canonical	3	6	junction_3	2.94811092476036	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACATGTTGCTCTCTCTCT	2885	False	NA	2	True	AATAAA	-10	NA	65035663	65045220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_65035987_65036061_65036164_65037844_65038029_65038625_65038754_65038890_65039062_65039207_65039346_65040332_65040439_65040921_65041151_65041754_65041920_65042393
ENSMUSG00000032816.16_5	chr9	+	2405	1	ISM	ENSMUSG00000032816.16	ENSMUST00000213533.2	6220	20	34050	0	34001	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTTGCTCTCTCTCTTT	NA	False	NA	4	True	AATAAA	-12	NA	65042817	65045222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_65042800_65045200
ENSMUSG00000032826.20_0	chr3	-	5734	25	FSM	ENSMUSG00000032826.20	ENSMUST00000044443.15	5775	25	39	2	15	0	multi-exon	FALSE	canonical	2	3	junction_24	9.47034846243791	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTTGCAGTGGTGGTTT	NA	False	NA	-7	True	AATAAA	-14	NA	126792072	126715262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_126717621_126722313_126722497_126723370_126723536_126723646_126723731_126726586_126726876_126728174_126728428_126730268_126730413_126731386_126731519_126733720_126733796_126744383_126744406_126746137_126746171_126746825_126746949_126748632_126748759_126749518_126749748_126750904_126751002_126752531_126752737_126753301_126753514_126755899_126756055_126758586_126758812_126769699_126769804_126770493_126770597_126775448_126775594_126781792_126781866_126791501_126791601_126791972
ENSMUSG00000032826.20_12	chr3	-	8214	46	NIC	ENSMUSG00000032826.20	novel	14305	46	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	2	11	junction_43	8.03553834806417	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTGCAGTGGTGGTT	2197	False	NA	-8	True	AATAAA	-13	NA	127202646	126715263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_126717621_126722313_126722497_126723370_126723536_126723646_126723731_126726586_126726876_126728174_126728428_126730268_126730413_126731386_126731519_126733720_126733796_126744383_126744406_126746137_126746171_126746825_126746949_126748632_126748759_126749518_126749748_126750904_126751002_126752531_126752737_126753301_126753514_126755899_126756055_126758586_126758812_126769699_126769804_126770493_126770597_126775448_126775594_126781792_126781866_126791501_126791601_126792525_126792625_126796326_126796426_126797593_126797693_126804502_126804701_126806321_126806421_126806887_126806987_126810464_126810663_126816940_126817040_126822867_126822967_126823123_126823223_126825764_126825963_126832395_126832495_126840373_126840473_126841830_126841930_126846336_126846523_126850641_126850741_126871150_126871250_126873546_126873646_126898409_126898512_127041782_127041882_127132780_127132842_127202493
ENSMUSG00000032826.20_2	chr3	-	3219	6	ISM	ENSMUSG00000032826.20	ENSMUST00000044443.15	5775	25	63804	-5	42	5	3prime_fragment	FALSE	canonical	3	29	junction_1	7.05407683541936	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGGTGGTTTTGTCCTT	NA	False	NA	0	True	AATAAA	-21	NA	126728307	126715255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_126717621_126722313_126722497_126723370_126723536_126723646_126723731_126726586_126726876_126728174
ENSMUSG00000032826.20_31	chr3	-	8129	45	NNC	ENSMUSG00000032826.20	novel	14305	46	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_43	8.41839166241499	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTGCAGTGGTGGTT	2185	False	NA	-8	True	AATAAA	-13	NA	127202658	126715263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_126717621_126722313_126722497_126723370_126723536_126723646_126723731_126726586_126726876_126728174_126728428_126730268_126730413_126731386_126731519_126733720_126733796_126744383_126744406_126746137_126746171_126746825_126746949_126748632_126748759_126749518_126749748_126750904_126751002_126752531_126752737_126753301_126753514_126755899_126756055_126758586_126758812_126769699_126769804_126770493_126770597_126775448_126775594_126781792_126781866_126791501_126791601_126792525_126792625_126796326_126796426_126797593_126797693_126804502_126804701_126806321_126806421_126806887_126806987_126810464_126810663_126816940_126817040_126822867_126822967_126823123_126823223_126825764_126825963_126832395_126832495_126840373_126840473_126841830_126841930_126846336_126846523_126850641_126850741_126871150_126871250_126873546_126873646_126898409_126898514_127132780_127132842_127202493
ENSMUSG00000032826.20_39	chr3	-	4641	17	ISM	ENSMUSG00000032826.20	ENSMUST00000044443.15	5775	25	38686	3	-3702	-1	3prime_fragment	FALSE	canonical	3	29	junction_1	5.14743564797074	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTGCAGTGGTGGTT	NA	False	NA	-8	True	AATAAA	-13	NA	126753425	126715263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_126717621_126722313_126722497_126723370_126723536_126723646_126723731_126726586_126726876_126728174_126728428_126730268_126730413_126731386_126731519_126733720_126733796_126744383_126744406_126746137_126746171_126746825_126746949_126748632_126748759_126749518_126749748_126750904_126751002_126752531_126752737_126753301
ENSMUSG00000032826.20_8	chr3	-	1834	1	FSM	ENSMUSG00000032826.20	ENSMUST00000182588.5	2359	1	525	0	525	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTTGCAGTGGTGGTTT	NA	False	NA	-7	True	AATAAA	-14	NA	126717096	126715262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_126715300_126717100
ENSMUSG00000032827.16_1	chr6	+	10167	21	NIC	ENSMUSG00000032827.16	novel	4810	20	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_16	3.57036412708844	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGAGTCCATGTTTCTT	0	True	NA	3	True	AATAAA	-16	NA	4902963	5165661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_4903032_4905225_4906845_5045935_5046069_5057457_5057579_5063990_5064096_5077479_5077616_5083040_5083107_5100431_5100588_5110999_5111054_5113600_5113831_5115118_5115216_5115308_5115481_5134016_5134175_5134688_5134933_5143227_5143316_5143405_5143490_5154008_5154208_5156120_5156241_5157003_5157028_5158088_5158272_5159551
ENSMUSG00000032827.16_15	chr6	+	3874	1	ISM	ENSMUSG00000032827.16	ENSMUST00000035813.9	9547	16	258450	18	48311	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAAATACAGAGGTCTC	NA	False	NA	-15	True	AATAAA	-45	NA	5161769	5165643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_5161800_5165600
ENSMUSG00000032827.16_16	chr6	+	6334	20	NIC	ENSMUSG00000032827.16	novel	4810	20	NA	NA	6	1590	combination_of_known_junctions	FALSE	canonical	1	1	junction_16	3.93858672291994	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGAAGCTTCTGTGTGTT	-41	True	NA	NA	False	AAAAAG	-10	NA	4902922	5161811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_4903032_4905225_4906845_5045935_5046069_5057457_5057579_5063990_5064096_5077479_5077616_5083040_5083107_5100431_5100588_5110999_5111054_5113600_5113831_5115118_5115216_5115308_5115481_5134016_5134175_5134688_5134933_5143227_5143316_5143405_5143490_5154008_5154208_5156120_5156241_5158088_5158272_5159551
ENSMUSG00000032827.16_7	chr6	+	6058	20	NIC	ENSMUSG00000032827.16	novel	4810	20	NA	NA	307	1896	combination_of_known_junctions	FALSE	canonical	1	1	junction_15	3.59670517121471	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAAATGAGTTCTTTT	510	False	NA	NA	False	NA	NA	NA	4905722	5162117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_4906845_5045935_5046069_5057457_5057579_5063990_5064096_5077479_5077616_5083040_5083107_5100431_5100588_5110999_5111054_5113600_5113831_5115118_5115216_5115308_5115481_5134016_5134175_5134688_5134933_5143227_5143316_5143405_5143490_5154008_5154208_5156120_5156241_5157003_5157028_5158088_5158272_5159551
ENSMUSG00000032834.12_0	chr10	-	3848	21	FSM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	22	2	22	-2	multi-exon	FALSE	canonical	3	184	junction_16	14.9260678009984	452	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGGTTTTGTCTGTGTGT	NA	False	NA	-7	True	AATACA	-15	NA	78020961	78006744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
ENSMUSG00000032839.14_1	chr9	-	4295	11	FSM	ENSMUSG00000032839.14	ENSMUST00000190604.7	2757	11	5	-1543	5	-2	multi-exon	TRUE	canonical	1	1	junction_5	2.90516780926679	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTGATAGAGCTTGAGC	NA	False	NA	NA	False	AATAAA	-18	NA	95632406	95587136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_95589021_95590253_95590449_95590698_95590901_95592168_95592345_95598135_95598280_95599572_95599713_95603185_95603523_95605147_95605344_95608477_95608610_95614059_95614263_95631720
ENSMUSG00000032839.14_3	chr9	-	4416	12	NIC	ENSMUSG00000032839.14	novel	2912	12	NA	NA	13	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	2.86904251601082	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATAAGTTTGATAGAGCT	NA	False	NA	NA	False	AATAAA	-13	NA	95632398	95587141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_95589021_95590253_95590449_95590698_95590901_95592168_95592345_95598135_95598280_95599572_95599713_95603185_95603523_95605147_95605344_95608477_95608589_95614059_95614263_95625249_95625405_95631720
ENSMUSG00000032840.8_0	chr5	+	1046	5	FSM	ENSMUSG00000032840.8	ENSMUST00000049138.8	5649	5	27	4576	27	-4576	multi-exon	FALSE	canonical	3	164	junction_3	13.6633634219397	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGTTGCTCTCATTTCCTG	1666	False	NA	4	True	AATACA	-13	NA	118383318	118399582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164
ENSMUSG00000032840.8_1	chr5	+	2513	6	NNC	ENSMUSG00000032840.8	novel	5649	5	NA	NA	19	-2981	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	73.3255753472143	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGGCTGTGGAATGTGG	1658	False	NA	7	True	NA	NA	NA	118383310	118401177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164_118399994_118400129
ENSMUSG00000032840.8_15	chr5	+	2271	1	ISM	ENSMUSG00000032840.8	ENSMUST00000049138.8	5649	5	18592	4	18592	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGCTGTTTTACAGTGC	NA	False	NA	4	True	AATAAA	-14	NA	118401883	118404154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118401900_118404200
ENSMUSG00000032841.16_2	chr2	-	3033	9	FSM	ENSMUSG00000032841.16	ENSMUST00000043845.14	2290	9	45	-788	-13	788	multi-exon	TRUE	canonical	1	4	junction_4	1.6583123951777	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATAAGGTGTT	1022	False	NA	NA	False	NA	NA	NA	101628008	101545797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_101547812_101559768_101559896_101564949_101565091_101571631_101571724_101577070_101577129_101588854_101588904_101601279_101601361_101602474_101602754_101627816
ENSMUSG00000032841.16_3	chr2	-	3087	9	FSM	ENSMUSG00000032841.16	ENSMUST00000171088.8	4296	9	41	1168	-16	788	multi-exon	FALSE	canonical	0	0	junction_8	2.72717802865893	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATAAGGTGTT	1019	False	NA	NA	False	NA	NA	NA	101628011	101545797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_101547812_101559768_101559896_101564949_101565091_101571631_101571724_101577070_101577129_101588854_101588904_101601279_101601361_101602474_101602754_101627765
ENSMUSG00000032842.14_0	chr17	-	4826	21	FSM	ENSMUSG00000032842.14	ENSMUST00000167360.8	4866	21	28	12	2	0	multi-exon	FALSE	canonical	3	24	junction_18	9.45832966226067	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTCTGTGTTTTAAAAAA	7140	False	NA	-6	True	GATAAA	-12	NA	46638921	46614158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46614579_46614838_46614952_46615082_46615181_46615255_46615402_46616326_46616593_46616886_46617048_46617474_46617645_46617882_46618227_46620963_46621160_46621302_46621457_46623215_46623414_46623760_46623839_46624556_46624747_46625141_46625241_46626309_46626482_46627482_46627563_46632478_46632589_46633062_46633220_46634277_46634506_46634618_46635841_46638697
ENSMUSG00000032842.14_21	chr17	-	3488	20	FSM	ENSMUSG00000032842.14	ENSMUST00000095261.10	5266	20	1966	-188	-168	0	multi-exon	FALSE	canonical	3	24	junction_18	9.6902155295076	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTCTGTGTTTTAAAAAA	5402	False	NA	-6	True	GATAAA	-12	NA	46634726	46614158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46614579_46614838_46614952_46615082_46615181_46615255_46615402_46616326_46616593_46616886_46617048_46617474_46617645_46617882_46618227_46620963_46621160_46621302_46621457_46623215_46623414_46623760_46623839_46624556_46624747_46625141_46625241_46626309_46626482_46627482_46627563_46632478_46632589_46633062_46633220_46634277_46634506_46634618
ENSMUSG00000032842.14_4	chr17	-	3352	18	NIC	ENSMUSG00000032842.14	novel	5266	20	NA	NA	1372	-1	combination_of_known_junctions	TRUE	canonical	0	0	junction_13	13.8743745767582	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCTGTGTTTTAAAAAAAT	6942	False	NA	-4	True	GATAAA	-14	NA	46633186	46614156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_46614579_46614838_46614952_46615082_46615181_46615255_46615402_46616326_46616593_46616886_46617048_46617474_46617645_46617882_46618227_46620963_46621160_46621302_46621457_46623215_46623414_46623760_46623839_46624556_46624978_46625141_46625241_46626309_46626482_46627482_46627563_46632478_46632589_46633062
ENSMUSG00000032842.14_5	chr17	-	3118	18	ISM	ENSMUSG00000032842.14	ENSMUST00000095261.10	5266	20	3507	-188	1373	0	3prime_fragment	TRUE	canonical	3	35	junction_13	8.70349728855608	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTCTGTGTTTTAAAAAA	6943	False	NA	-6	True	GATAAA	-12	NA	46633185	46614158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_46614579_46614838_46614952_46615082_46615181_46615255_46615402_46616326_46616593_46616886_46617048_46617474_46617645_46617882_46618227_46620963_46621160_46621302_46621457_46623215_46623414_46623760_46623839_46624556_46624747_46625141_46625241_46626309_46626482_46627482_46627563_46632478_46632589_46633062
ENSMUSG00000032842.14_7	chr17	-	4901	20	FSM	ENSMUSG00000032842.14	ENSMUST00000047970.14	4885	20	-16	0	2	0	multi-exon	FALSE	canonical	3	24	junction_17	9.55491490762564	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTCTGTGTTTTAAAAAA	7140	False	NA	-6	True	GATAAA	-12	NA	46638921	46614158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46614579_46614838_46614952_46615082_46615402_46616326_46616593_46616886_46617048_46617474_46617645_46617882_46618227_46620963_46621160_46621302_46621457_46623215_46623414_46623760_46623839_46624556_46624747_46625141_46625241_46626309_46626482_46627482_46627563_46632478_46632589_46633062_46633220_46634277_46634506_46634618_46635841_46638697
ENSMUSG00000032846.13_0	chr13	-	3099	5	FSM	ENSMUSG00000032846.13	ENSMUST00000224719.3	2126	5	212	-1185	212	-2	multi-exon	FALSE	canonical	0	0	junction_2	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTGCCTCGTTTATATC	886	False	NA	NA	False	ATTAAA	-19	NA	107870349	107861153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_107863833_107865106_107865189_107866761_107866926_107867583_107867742_107870333
ENSMUSG00000032846.13_1	chr13	-	1325	1	ISM	ENSMUSG00000032846.13	ENSMUST00000225822.4	5310	13	164120	2	8083	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTGCCTCGTTTATATC	8757	False	NA	NA	False	ATTAAA	-19	NA	107862478	107861153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_107861200_107862500
ENSMUSG00000032846.13_3	chr13	-	5532	14	FSM	ENSMUSG00000032846.13	ENSMUST00000225197.3	5278	14	-84	-170	-84	-9	multi-exon	FALSE	canonical	0	0	junction_2	1.07141448286032	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTTGATTCTGCCTCGT	NA	False	NA	NA	False	ATTAAA	-12	NA	108026682	107861160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_107863833_107865106_107865189_107866761_107866926_107867583_107867742_107870333_107870470_107874906_107875168_107876767_107876915_107880070_107880218_107880495_107880673_107884718_107884899_107906094_107906246_107909907_107910057_107924187_107924545_108025931
ENSMUSG00000032849.15_1	chr14	-	5647	31	FSM	ENSMUSG00000032849.15	ENSMUST00000036554.14	5715	31	-19	87	-5	-87	multi-exon	FALSE	canonical	3	201	junction_24	29.291276668812	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTATGTTCCTATTTCA	NA	False	NA	-13	True	ATTAAA	-10	NA	118943636	118720190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_118721853_118727910_118728046_118737377_118737484_118738119_118738293_118745004_118745095_118753844_118754001_118763623_118763816_118765362_118765464_118766378_118766490_118767269_118767390_118771403_118771555_118790695_118790776_118832173_118832321_118834091_118834187_118834550_118834589_118834905_118835047_118836725_118836936_118841568_118841666_118848848_118848936_118849129_118849225_118852542_118852735_118853777_118853868_118856300_118856403_118864863_118865114_118867029_118867156_118868390_118868555_118869509_118869600_118891561_118891787_118905758_118905880_118906408_118906520_118943447
ENSMUSG00000032849.15_25	chr14	-	4486	24	ISM	ENSMUSG00000032849.15	ENSMUST00000226703.2	4592	31	49365	-1032	49365	-87	3prime_fragment	TRUE	canonical	3	219	junction_17	27.3028938964879	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTATGTTCCTATTTCA	NA	False	NA	-13	True	ATTAAA	-10	NA	118864978	118720190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_118721853_118727910_118728046_118737377_118737484_118738119_118738293_118745004_118745095_118753844_118754001_118763623_118763816_118765362_118765464_118766378_118766490_118767269_118767390_118771403_118771555_118790695_118790776_118832173_118832321_118834091_118834187_118834550_118834589_118834905_118835047_118836725_118836936_118841568_118841666_118848848_118848936_118849129_118849225_118852542_118852735_118853777_118853868_118856300_118856403_118864863
ENSMUSG00000032849.15_62	chr14	-	3305	24	ISM	ENSMUSG00000032849.15	ENSMUST00000036554.14	5715	31	1	45067	1	-1	5prime_fragment	FALSE	canonical	3	201	junction_17	22.6862382608316	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTGTCTCATGTATGC	NA	False	NA	NA	False	AATAAA	-14	NA	118943616	118765170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_118765464_118766378_118766490_118767269_118767390_118771403_118771555_118790695_118790776_118832173_118832321_118834091_118834187_118834550_118834589_118834905_118835047_118836725_118836936_118841568_118841666_118848848_118848936_118849129_118849225_118852542_118852735_118853777_118853868_118856300_118856403_118864863_118865114_118867029_118867156_118868390_118868555_118869509_118869600_118891561_118891787_118905758_118905880_118906408_118906520_118943447
ENSMUSG00000032850.17_0	chr5	-	4396	11	NIC	ENSMUSG00000032850.17	novel	4431	11	NA	NA	878	1	combination_of_known_splicesites	FALSE	canonical	2	5	junction_10	5.51724568965349	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTGAGTCACTGTGCCT	NA	False	NA	NA	False	AATAAA	-24	NA	118382048	118328799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_118331732_118339212_118339315_118339430_118339497_118340838_118340989_118366848_118367003_118370466_118370568_118372205_118372283_118375191_118375662_118380522_118380582_118380914_118381097_118381945
ENSMUSG00000032850.17_13	chr5	-	2137	4	ISM	ENSMUSG00000032850.17	ENSMUST00000121369.8	4431	11	107	44997	-15	1188	5prime_fragment	FALSE	canonical	3	9	junction_1	3.55902608401044	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAACAAAAAAGAGAAT	NA	False	NA	NA	False	NA	NA	NA	118383074	118373803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_118375662_118380522_118380582_118380914_118381097_118383036
ENSMUSG00000032850.17_14	chr5	-	3875	10	NIC	ENSMUSG00000032850.17	novel	4431	11	NA	NA	-36	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	6.64626507943919	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGTATCTGTGAGTCAC	NA	False	NA	NA	False	AATAAA	-17	NA	118383095	118328806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_118331732_118339212_118339315_118339430_118339497_118340838_118340989_118366848_118367003_118370466_118370568_118372205_118372283_118380522_118380582_118380914_118381097_118383036
ENSMUSG00000032850.17_17	chr5	-	2418	11	NIC	ENSMUSG00000032850.17	novel	4431	11	NA	NA	-14	-75	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	6.557438524302	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCTGTGGCTGGACA	NA	False	NA	NA	False	NA	NA	NA	118383073	118331711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_118332732_118339212_118339315_118339430_118339497_118340838_118340989_118366848_118367003_118370466_118370568_118372205_118372283_118375191_118375662_118380522_118380582_118380914_118381097_118383036
ENSMUSG00000032850.17_4	chr5	-	1301	1	ISM	ENSMUSG00000032850.17	ENSMUST00000117177.8	4381	12	52815	10	9186	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAACTTGTATCTGTGAG	NA	False	NA	NA	False	AATAAA	-13	NA	118330111	118328810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_118328800_118330100
ENSMUSG00000032850.17_5	chr5	-	4322	11	NIC	ENSMUSG00000032850.17	novel	4431	11	NA	NA	-14	-4	combination_of_known_junctions	FALSE	canonical	3	6	junction_8	5.24976189936267	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAACTTGTATCTGTGAG	NA	False	NA	NA	False	AATAAA	-13	NA	118383073	118328810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_118331732_118339212_118339315_118339430_118339497_118340838_118340989_118366848_118367003_118370466_118370568_118372205_118372283_118375191_118375665_118380522_118380582_118380914_118381097_118383036
ENSMUSG00000032850.17_6	chr5	-	4323	11	FSM	ENSMUSG00000032850.17	ENSMUST00000121369.8	4431	11	108	0	-14	0	multi-exon	FALSE	canonical	3	9	junction_8	4.80520551069359	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGTATCTGTGAGTCAC	NA	False	NA	NA	False	AATAAA	-17	NA	118383073	118328806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_118331732_118339212_118339315_118339430_118339497_118340838_118340989_118366848_118367003_118370466_118370568_118372205_118372283_118375191_118375662_118380522_118380582_118380914_118381097_118383036
ENSMUSG00000032854.13_0	chr3	-	3672	6	FSM	ENSMUSG00000032854.13	ENSMUST00000057944.12	3740	6	-2	70	-2	-70	multi-exon	FALSE	canonical	3	9	junction_2	3.44093010681705	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTTATCCTTTAAAGTAC	NA	False	NA	NA	False	AATAAA	-13	NA	125732270	125658989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_125661229_125665233_125665454_125667797_125667875_125669137_125669281_125708286_125709111_125732101
ENSMUSG00000032854.13_2	chr3	-	3303	5	FSM	ENSMUSG00000032854.13	ENSMUST00000198610.2	3762	5	642	-183	642	-52	multi-exon	FALSE	canonical	3	9	junction_2	3.74165738677394	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCAACACGGATCTTTAA	NA	False	NA	NA	False	AATAAA	-31	NA	125708892	125658971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_125661229_125665233_125665454_125667797_125667875_125669137_125669281_125708286
ENSMUSG00000032854.13_4	chr3	-	1567	1	ISM	ENSMUSG00000032854.13	ENSMUST00000057944.12	3740	6	71528	254	48794	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGTTGAAAATAGAGAAAT	NA	False	NA	NA	False	AATAAA	-2	NA	125660740	125659173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_125659200_125660700
ENSMUSG00000032855.7_11	chr17	+	4400	16	NIC	ENSMUSG00000032855.7	novel	14164	46	NA	NA	728	-29	intron_retention	FALSE	canonical	3	8	junction_1	8.8458402025409	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTCTGTGCTGCTCT	1195	False	NA	7	True	AATAAA	-12	NA	24805547	24815452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24806267_24806373_24806424_24806623_24806809_24806901_24806996_24809792_24809912_24809988_24810192_24810260_24810456_24810811_24810952_24811584_24811698_24812178_24812321_24812449_24812576_24812772_24812948_24813061_24813353_24813434_24813570_24813645_24813952_24814045
ENSMUSG00000032855.7_15	chr17	+	2699	8	ISM	ENSMUSG00000032855.7	ENSMUST00000227107.2	6681	31	16066	26	1206	-26	3prime_fragment	FALSE	canonical	3	19	junction_4	9.0034007180507	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTCTGTGCTGCTCTCTG	7231	False	NA	10	True	AATAAA	-15	NA	24811583	24815455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24811698_24812178_24812321_24812449_24812576_24812772_24812948_24813061_24813353_24813434_24813570_24813645_24813952_24814045
ENSMUSG00000032855.7_16	chr17	+	2546	7	ISM	ENSMUSG00000032855.7	ENSMUST00000227107.2	6681	31	16702	24	1842	-24	3prime_fragment	FALSE	canonical	3	19	junction_3	9.1104335791443	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGCTGCTCTCTGAA	7867	False	NA	12	True	AATAAA	-17	NA	24812219	24815457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24812321_24812449_24812576_24812772_24812948_24813061_24813353_24813434_24813570_24813645_24813952_24814045
ENSMUSG00000032855.7_18	chr17	+	2393	6	ISM	ENSMUSG00000032855.7	ENSMUST00000227107.2	6681	31	16981	27	2121	-27	3prime_fragment	FALSE	canonical	3	19	junction_2	9.97997995989972	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTCTGTGCTGCTCTCT	8146	False	NA	9	True	AATAAA	-14	NA	24812498	24815454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24812576_24812772_24812948_24813061_24813353_24813434_24813570_24813645_24813952_24814045
ENSMUSG00000032855.7_19	chr17	+	1510	2	ISM	ENSMUSG00000032855.7	ENSMUST00000227107.2	6681	31	18333	27	3473	-27	3prime_fragment	FALSE	canonical	3	22	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTCTGTGCTGCTCTCT	9498	False	NA	9	True	AATAAA	-14	NA	24813850	24815454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24813952_24814045
ENSMUSG00000032855.7_23	chr17	+	6625	29	ISM	ENSMUSG00000032855.7	ENSMUST00000035565.5	14164	46	27799	30	-277	-29	3prime_fragment	FALSE	canonical	2	6	junction_4	9.12854627763135	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTCTGTGCTGCTCT	NA	False	NA	7	True	AATAAA	-12	NA	24796722	24815452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24797004_24797069_24797284_24797352_24797513_24797784_24797935_24798694_24798840_24798928_24799550_24799848_24800006_24800164_24800418_24800536_24800733_24804650_24804822_24804896_24805041_24805137_24805349_24805435_24805563_24806152_24806267_24806373_24806424_24806623_24806809_24806901_24806996_24809792_24809912_24809988_24810192_24810260_24810456_24810811_24810952_24811584_24811698_24812178_24812321_24812449_24812576_24812772_24812948_24813061_24813353_24813434_24813570_24813645_24813952_24814045
ENSMUSG00000032855.7_25	chr17	+	4464	20	NIC	ENSMUSG00000032855.7	novel	14164	46	NA	NA	2469	-29	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	9.35777040945177	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTCTGTGCTGCTCT	NA	False	NA	7	True	AATAAA	-12	NA	24800602	24815452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24800733_24804650_24804822_24804896_24805041_24805137_24805349_24805435_24805563_24806373_24806424_24806623_24806809_24806901_24806996_24809792_24809912_24809988_24810192_24810260_24810456_24810811_24810952_24811584_24811698_24812178_24812321_24812449_24812576_24812772_24812948_24813061_24813353_24813434_24813570_24813645_24813952_24814045
ENSMUSG00000032855.7_28	chr17	+	424	1	ISM	ENSMUSG00000032855.7	ENSMUST00000035565.5	14164	46	46109	26	4655	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTGCTGCTCTCTGA	NA	False	NA	11	True	AATAAA	-16	NA	24815032	24815456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24815000_24815500
ENSMUSG00000032855.7_5	chr17	+	7878	32	ISM	ENSMUSG00000032855.7	ENSMUST00000035565.5	14164	46	25339	25	-1255	-24	3prime_fragment	FALSE	canonical	2	6	junction_7	8.96901824289678	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGCTGCTCTCTGAA	NA	False	NA	12	True	AATAAA	-17	NA	24794262	24815457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24795218_24795411_24795562_24796492_24796637_24796723_24797004_24797069_24797284_24797352_24797513_24797784_24797935_24798694_24798840_24798928_24799550_24799848_24800006_24800164_24800418_24800536_24800733_24804650_24804822_24804896_24805041_24805137_24805349_24805435_24805563_24806152_24806267_24806373_24806424_24806623_24806809_24806901_24806996_24809792_24809912_24809988_24810192_24810260_24810456_24810811_24810952_24811584_24811698_24812178_24812321_24812449_24812576_24812772_24812948_24813061_24813353_24813434_24813570_24813645_24813952_24814045
ENSMUSG00000032855.7_6	chr17	+	8478	31	NIC	ENSMUSG00000032855.7	novel	14164	46	NA	NA	-1982	-37	combination_of_known_junctions	FALSE	canonical	2	5	junction_16	9.1146402379176	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTCTGACTGCTGTCTGT	NA	False	NA	-1	True	AATAAA	-4	NA	24793535	24815444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24795218_24795411_24795562_24796492_24796637_24796723_24797004_24797069_24797284_24797352_24797513_24797784_24797935_24798694_24798840_24798928_24799550_24799848_24800006_24800164_24800418_24800536_24800733_24804650_24804822_24804896_24805041_24805137_24805349_24805435_24805563_24806373_24806424_24806623_24806809_24806901_24806996_24809792_24809912_24809988_24810192_24810260_24810456_24810811_24810952_24811584_24811698_24812178_24812321_24812449_24812576_24812772_24812948_24813061_24813353_24813434_24813570_24813645_24813952_24814045
ENSMUSG00000032860.6_2	chr7	-	2993	3	FSM	ENSMUSG00000032860.6	ENSMUST00000037540.5	3011	3	4	14	-3	-14	multi-exon	FALSE	canonical	2	2	junction_1	4	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATCACCAGTTGCTCTC	3107	False	NA	NA	False	ATTAAA	-5	NA	100661201	100645788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_100648308_100652770_100652962_100660918
ENSMUSG00000032860.6_3	chr7	-	896	1	ISM	ENSMUSG00000032860.6	ENSMUST00000037540.5	3011	3	14065	470	5954	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTCCTGAAAAATCAAC	9832	False	NA	NA	False	AATACA	-17	NA	100647140	100646244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_100646200_100647100
ENSMUSG00000032867.9_0	chr5	-	3293	11	FSM	ENSMUSG00000032867.9	ENSMUST00000049474.9	5000	11	54	1653	16	-1653	multi-exon	FALSE	canonical	3	339	junction_8	26.290682760248	959	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGAGCGTGTGTGCTGCT	NA	False	NA	-34	True	ATTAAA	-11	NA	118293475	118204682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_118206295_118206669_118206781_118208410_118208585_118215641_118215770_118230560_118230768_118233597_118233795_118251676_118251835_118263000_118263090_118266873_118267039_118280732_118280838_118293128
ENSMUSG00000032869.16_0	chr2	-	1058	1	ISM	ENSMUSG00000032869.16	ENSMUST00000042452.11	3809	7	23510	931	3195	-681	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTAATAGCTTTATT	3895	False	NA	-2	True	AATAAA	-18	NA	151559720	151558662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_151558700_151559700
ENSMUSG00000032869.16_2	chr2	-	1315	7	FSM	ENSMUSG00000032869.16	ENSMUST00000042452.11	3809	7	45	2449	28	4	multi-exon	FALSE	canonical	3	320	junction_3	11.5385826204473	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCACGCTCCTTTTTGTTA	NA	False	NA	-24	True	AATACA	-19	NA	151583185	151560180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577393_151577547_151582930
ENSMUSG00000032870.9_0	chr4	-	2881	10	FSM	ENSMUSG00000032870.9	ENSMUST00000043200.8	2905	10	14	10	14	-10	multi-exon	TRUE	canonical	3	186	junction_3	19.2841007882109	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGACCCTTTTTGCTCGGC	NA	False	NA	-12	True	AATAAA	-11	NA	120874430	120825523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_120826862_120829086_120829404_120830289_120830456_120831582_120831690_120832568_120832651_120834147_120834235_120839323_120839403_120840303_120840390_120842391_120842526_120873945
ENSMUSG00000032872.17_0	chr9	+	2194	16	FSM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	49	401	-24	-8	multi-exon	FALSE	canonical	3	203	junction_12	173.734612428139	936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTTACTCCCTGTGGTG	NA	False	NA	3	True	AATAAA	-14	NA	86904115	86959426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
ENSMUSG00000032872.17_9	chr9	+	2037	14	NIC	ENSMUSG00000032872.17	novel	2644	16	NA	NA	-25	-10	combination_of_known_splicesites	FALSE	canonical	3	62	junction_8	234.467696264786	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTTTACTCCCTGTGG	NA	False	NA	1	True	AATAAA	-12	NA	86904114	86959424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
ENSMUSG00000032875.9_0	chr7	-	7494	21	FSM	ENSMUSG00000032875.9	ENSMUST00000107032.3	10190	21	306	2390	306	-7	multi-exon	FALSE	canonical	2	6	junction_5	4.18658572108586	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTAAATGATGGCTCC	9849	False	NA	-20	True	AATAAA	-4	NA	100581008	100521348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_100522804_100525619_100525890_100525972_100526148_100526914_100527064_100527302_100527371_100527700_100527788_100528011_100528262_100528658_100528964_100529139_100529340_100529807_100529882_100530385_100530600_100530899_100531019_100531426_100531513_100531616_100531727_100531979_100532031_100532322_100532500_100532676_100532770_100532974_100533092_100534883_100535067_100539627_100539706_100577775
ENSMUSG00000032875.9_10	chr7	-	2611	8	ISM	ENSMUSG00000032875.9	ENSMUST00000209041.2	4516	21	15089	0	107	0	3prime_fragment	FALSE	canonical	3	6	junction_5	5.19418827505653	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGATGGCTCCCCCGGGC	4662	False	NA	-13	True	AATAAA	-11	NA	100528808	100521341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_100522804_100525619_100525890_100525972_100526148_100526914_100527064_100527302_100527371_100527700_100527788_100528011_100528262_100528658
ENSMUSG00000032875.9_3	chr7	-	4527	21	FSM	ENSMUSG00000032875.9	ENSMUST00000209041.2	4516	21	-18	7	-18	-7	multi-exon	FALSE	canonical	0	0	junction_20	5.07346035758633	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTAAATGATGGCTCC	6834	False	NA	-20	True	AATAAA	-4	NA	100543915	100521348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_100522804_100525619_100525890_100525972_100526148_100526914_100527064_100527302_100527371_100527700_100527788_100528011_100528262_100528658_100528964_100529139_100529340_100529807_100529882_100530385_100530600_100530899_100531019_100531426_100531513_100531616_100531727_100531979_100532031_100532322_100532500_100532676_100532770_100532974_100533092_100534883_100535067_100539627_100539706_100543649
ENSMUSG00000032875.9_8	chr7	-	3163	11	ISM	ENSMUSG00000032875.9	ENSMUST00000209041.2	4516	21	13389	0	-1593	0	3prime_fragment	FALSE	canonical	3	6	junction_5	4.43734154646676	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGATGGCTCCCCCGGGC	9085	False	NA	-13	True	AATAAA	-11	NA	100530508	100521341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_100522804_100525619_100525890_100525972_100526148_100526914_100527064_100527302_100527371_100527700_100527788_100528011_100528262_100528658_100528964_100529139_100529340_100529807_100529882_100530385
ENSMUSG00000032878.17_1	chr11	-	3799	6	FSM	ENSMUSG00000032878.17	ENSMUST00000146385.9	3798	6	2	-3	2	3	multi-exon	TRUE	canonical	0	0	junction_1	1.16619037896906	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGTCTGTTTTGAAAT	NA	False	NA	NA	False	AATAAA	-18	NA	28533993	28337148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_28338949_28346045_28346166_28349375_28349511_28384080_28384158_28526390_28527346_28533281
ENSMUSG00000032878.17_2	chr11	-	3605	4	FSM	ENSMUSG00000032878.17	ENSMUST00000042534.15	5332	4	265	1462	-64	-2	multi-exon	FALSE	canonical	1	1	junction_1	0.816496580927726	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTATTTTTGTCTGTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	28534059	28337153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_28338949_28384080_28384158_28526390_28527346_28533281
ENSMUSG00000032878.17_3	chr11	-	3676	5	FSM	ENSMUSG00000032878.17	ENSMUST00000093253.10	5431	5	291	1464	-10	3	multi-exon	FALSE	canonical	0	0	junction_1	1.08972473588517	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGTCTGTTTTGAAAT	NA	False	NA	NA	False	AATAAA	-18	NA	28534005	28337148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_28338949_28346045_28346166_28384080_28384158_28526390_28527346_28533281
ENSMUSG00000032878.17_6	chr11	-	3804	2	FSM	ENSMUSG00000032878.17	ENSMUST00000109501.2	3134	2	2	-672	2	672	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGATCAAATATGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	28534264	28524524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_28527346_28533281
ENSMUSG00000032883.16_1	chr1	+	2981	15	FSM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	2	-7	2	7	multi-exon	TRUE	canonical	3	358	junction_1	36.8929090028677	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAATTTCGAATATATGC	NA	False	NA	10	True	AATAAA	-21	NA	78635601	78684691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_78635821_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
ENSMUSG00000032883.16_2	chr1	+	3121	16	FSM	ENSMUSG00000032883.16	ENSMUST00000035779.15	3950	16	60	769	2	7	multi-exon	FALSE	canonical	3	149	junction_2	98.3136477470617	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAATTTCGAATATATGC	NA	False	NA	10	True	AATAAA	-21	NA	78635601	78684691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_78635821_78640857_78640998_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
ENSMUSG00000032890.18_0	chr4	+	6475	8	FSM	ENSMUSG00000032890.18	ENSMUST00000071093.9	6505	8	19	11	19	-11	multi-exon	FALSE	canonical	3	28	junction_6	8.02546966010751	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGGTTTTATGTATGGC	NA	False	NA	5	True	AATAAA	-10	NA	120712034	120753765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_120712320_120729673_120729848_120735034_120735283_120740271_120740414_120744130_120744241_120746184_120746287_120746551_120746692_120748491
ENSMUSG00000032890.18_11	chr4	+	5907	6	FSM	ENSMUSG00000032890.18	ENSMUST00000171363.2	977	6	85	-5015	85	-4	multi-exon	FALSE	canonical	3	28	junction_4	6.55438784326958	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATGGCTTTCTGA	NA	False	NA	12	True	AATAAA	-17	NA	120735150	120753772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_120735283_120740271_120740414_120744130_120744241_120746184_120746287_120746551_120746692_120748491
ENSMUSG00000032890.18_3	chr4	+	1834	4	FSM	ENSMUSG00000032890.18	ENSMUST00000132895.8	2099	4	22	243	19	-243	multi-exon	FALSE	canonical	3	46	junction_3	1.24721912892465	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACAACCTGTACACATCC	NA	False	NA	NA	False	NA	NA	NA	120712034	120741398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_120712320_120729673_120729848_120735034_120735283_120740271
ENSMUSG00000032890.18_5	chr4	+	5706	5	ISM	ENSMUSG00000032890.18	ENSMUST00000171363.2	977	6	5274	-5014	5274	-5	3prime_fragment	FALSE	canonical	3	28	junction_3	4.15331193145904	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATGTATGGCTTTCTG	NA	False	NA	11	True	AATAAA	-16	NA	120740339	120753771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_120740414_120744130_120744241_120746184_120746287_120746551_120746692_120748491
ENSMUSG00000032890.18_7	chr4	+	3448	1	ISM	ENSMUSG00000032890.18	ENSMUST00000071093.9	6505	8	38309	4	15259	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATGGCTTTCTGA	NA	False	NA	12	True	AATAAA	-17	NA	120750324	120753772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_120750300_120753800
ENSMUSG00000032892.15_0	chr11	-	806	5	FSM	ENSMUSG00000032892.15	ENSMUST00000038644.5	820	5	4	10	4	1	multi-exon	FALSE	canonical	3	482	junction_2	47.2989164780759	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACATAATTTCTGTGCC	7240	False	NA	-12	True	AATAAA	-12	NA	68864665	68863319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_68863568_68863768_68863855_68863942_68864100_68864266_68864384_68864467
ENSMUSG00000032892.15_1	chr11	-	476	3	FSM	ENSMUSG00000032892.15	ENSMUST00000143444.8	568	3	91	1	-56	0	multi-exon	FALSE	canonical	3	482	junction_2	39.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTTCTGTGCCTTCAAA	7827	False	NA	-6	True	AATAAA	-18	NA	68864078	68863313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_68863568_68863768_68863855_68863942
ENSMUSG00000032892.15_2	chr11	-	985	4	NIC	ENSMUSG00000032892.15	novel	820	5	NA	NA	0	1	intron_retention	FALSE	canonical	3	482	junction_2	50.8876758710354	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCTGTGCCTTCAAATC	7236	False	NA	-4	True	AATAAA	-20	NA	68864669	68863311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_68863568_68863768_68863855_68863942_68864384_68864467
ENSMUSG00000032897.18_0	chr4	-	1928	10	FSM	ENSMUSG00000032897.18	ENSMUST00000043429.12	1932	10	1	3	1	-3	multi-exon	FALSE	canonical	3	393	junction_8	23.5424491839793	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAATCTGTGTCTGGGAC	NA	False	NA	-4	True	AATAAA	-17	NA	120682902	120614637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
ENSMUSG00000032897.18_7	chr4	-	1732	8	NIC	ENSMUSG00000032897.18	novel	1932	10	NA	NA	-2	-6	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	146.72367475869	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGAATCTGTGTCTGG	NA	False	NA	-7	True	AATAAA	-14	NA	120682895	120614640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120647573_120647687_120682726
ENSMUSG00000032897.18_8	chr4	-	1838	9	NIC	ENSMUSG00000032897.18	novel	1932	10	NA	NA	-3	-3	combination_of_known_junctions	TRUE	canonical	3	28	junction_7	133.008399640775	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAATCTGTGTCTGGGAC	NA	False	NA	-4	True	AATAAA	-17	NA	120682884	120614637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120647573_120647687_120682726
ENSMUSG00000032898.10_1	chr5	+	3692	12	FSM	ENSMUSG00000032898.10	ENSMUST00000035579.10	3883	12	-6	197	4	-197	multi-exon	FALSE	canonical	3	306	junction_9	49.846707161818	847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTTTTCCAAAAGTTT	NA	False	NA	23	True	AATAAA	-17	NA	118114842	118148068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163_118124286_118126842_118126990_118127188_118127326_118128867_118129005_118132546_118132727_118133434_118133568_118138402_118138594_118140079_118140238_118146074
ENSMUSG00000032898.10_2	chr5	+	3713	12	FSM	ENSMUSG00000032898.10	ENSMUST00000202447.4	3959	12	48	198	4	-197	multi-exon	FALSE	canonical	3	123	junction_9	98.2366008780135	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTTTTCCAAAAGTTT	NA	False	NA	23	True	AATAAA	-17	NA	118114842	118148068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163_118124286_118126842_118126990_118127188_118127326_118128867_118129005_118132546_118132727_118133434_118133568_118138381_118138594_118140079_118140238_118146074
ENSMUSG00000032902.2_0	chr3	+	3218	5	FSM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	-2	1210	-2	-1210	multi-exon	FALSE	canonical	3	470	junction_2	50.2462685181696	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACAGTTCTTCCGCAT	NA	False	NA	17	True	AATAAA	-18	NA	104545981	104564568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_104546145_104556573_104556834_104558201_104558346_104560057_104560904_104562763
ENSMUSG00000032902.2_11	chr3	+	2363	2	ISM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	14362	1210	14362	-1210	3prime_fragment	FALSE	canonical	3	524	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACAGTTCTTCCGCAT	NA	False	NA	17	True	AATAAA	-18	NA	104560345	104564568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_104560904_104562763
ENSMUSG00000032902.2_13	chr3	+	1444	1	ISM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	17141	1210	17141	-1210	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACAGTTCTTCCGCAT	NA	False	NA	17	True	AATAAA	-18	NA	104563124	104564568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_104563100_104564600
ENSMUSG00000032902.2_9	chr3	+	2956	4	ISM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	10689	1210	10689	-1210	3prime_fragment	FALSE	canonical	3	470	junction_1	22.4499443206436	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACAGTTCTTCCGCAT	NA	False	NA	17	True	AATAAA	-18	NA	104556672	104564568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_104556834_104558201_104558346_104560057_104560904_104562763
ENSMUSG00000032905.6_0	chr18	-	2452	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	24	2289	2	-2289	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATTTTTACCAGAATAA	NA	False	NA	-18	True	AATAAA	-11	NA	46874622	46865499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
ENSMUSG00000032905.6_1	chr18	-	1683	1	ISM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	7471	2282	7449	-2282	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACCAGAATAACTTATTG	NA	False	NA	-11	True	AATAAA	-18	NA	46867175	46865492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_46865500_46867200
ENSMUSG00000032908.10_0	chr1	+	4012	5	FSM	ENSMUSG00000032908.10	ENSMUST00000036172.10	4002	5	-19	9	-19	-9	multi-exon	FALSE	canonical	2	4	junction_1	2.12132034355964	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCTAATGTTTTGTTTC	NA	False	NA	NA	False	AATAAA	-35	NA	78286962	78396917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_78287140_78336707_78336867_78367111_78367292_78369995_78370086_78393511
ENSMUSG00000032908.10_2	chr1	+	3204	1	ISM	ENSMUSG00000032908.10	ENSMUST00000036172.10	4002	5	106732	9	106732	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCTAATGTTTTGTTTC	NA	False	NA	NA	False	AATAAA	-35	NA	78393713	78396917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_78393700_78396900
ENSMUSG00000032911.7_0	chr9	+	8124	10	FSM	ENSMUSG00000032911.7	ENSMUST00000035661.7	8121	10	-4	1	-4	0	multi-exon	FALSE	canonical	0	0	junction_7	0.831479419283098	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATAGACTCCTTGGCCT	NA	False	NA	NA	False	NA	NA	NA	56772312	56807153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_56772562_56790840_56791005_56792518_56796071_56797341_56797825_56798273_56798451_56799598_56799798_56799900_56800036_56800138_56800306_56803875_56804060_56804339
ENSMUSG00000032913.14_0	chr3	-	5298	18	FSM	ENSMUSG00000032913.14	ENSMUST00000046316.11	7099	18	-58	1859	20	731	multi-exon	FALSE	canonical	3	56	junction_3	14.2253246568117	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGGAAAAGTTGTCTTTT	NA	False	NA	NA	False	AGTAAA	-18	NA	104419214	104363154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_104365281_104368716_104369005_104369974_104370125_104371174_104371625_104372802_104373085_104374358_104374680_104375800_104375965_104387097_104387167_104387424_104387497_104389170_104389252_104397845_104397990_104398183_104398328_104398726_104398871_104399004_104399149_104401373_104401509_104401946_104402022_104404804_104404871_104418771
ENSMUSG00000032913.14_1	chr3	-	2928	1	ISM	ENSMUSG00000032913.14	ENSMUST00000046316.11	7099	18	54929	4	4600	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATTCTCTGGTCTTCTCT	NA	False	NA	-24	True	AATAAA	-12	NA	104364227	104361299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_104361300_104364200
ENSMUSG00000032913.14_24	chr3	-	3783	8	ISM	ENSMUSG00000032913.14	ENSMUST00000198089.5	1719	9	-245	6775	12	2344	5prime_fragment	FALSE	canonical	3	75	junction_1	8.83869045614744	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	104419222	104395365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_104397990_104398183_104398328_104398726_104398871_104399004_104399149_104401373_104401509_104401946_104402022_104404804_104404871_104418771
ENSMUSG00000032913.14_3	chr3	-	5272	18	FSM	ENSMUSG00000032913.14	ENSMUST00000198332.2	3946	18	-42	-1284	20	726	multi-exon	FALSE	canonical	3	19	junction_3	20.1729545898912	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCGAATTGGAAAAGTTGT	NA	False	NA	NA	False	AGTAAA	-13	NA	104419214	104363159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_104365281_104368716_104369005_104369974_104370104_104371174_104371625_104372802_104373085_104374358_104374680_104375800_104375965_104387097_104387167_104387424_104387497_104389170_104389252_104397845_104397990_104398183_104398328_104398726_104398871_104399004_104399149_104401373_104401509_104401946_104402022_104404804_104404871_104418771
ENSMUSG00000032913.14_6	chr3	-	6990	17	NIC	ENSMUSG00000032913.14	novel	7099	18	NA	NA	25	-11	combination_of_known_splicesites	FALSE	canonical	3	20	junction_2	19.5220228203944	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACATTATGATTCTCTGG	NA	False	NA	-32	True	AATAAA	-4	NA	104419209	104361307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_104365281_104368716_104369005_104371174_104371625_104372802_104373085_104374358_104374680_104375800_104375965_104387097_104387167_104387424_104387497_104389170_104389252_104397845_104397990_104398183_104398328_104398726_104398871_104399004_104399149_104401373_104401509_104401946_104402022_104404804_104404871_104418771
ENSMUSG00000032932.16_0	chr16	-	2724	1	ISM	ENSMUSG00000032932.16	ENSMUST00000046283.16	4237	5	8903	173	8864	-173	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATATTGTTTTCTATCT	NA	False	NA	-3	True	AATAAA	-20	NA	75554806	75552082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_75552100_75554800
ENSMUSG00000032932.16_1	chr16	-	4018	5	FSM	ENSMUSG00000032932.16	ENSMUST00000046283.16	4237	5	46	173	7	-173	multi-exon	FALSE	canonical	3	50	junction_2	5.78791845139511	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATATTGTTTTCTATCT	4027	False	NA	-3	True	AATAAA	-20	NA	75563663	75552082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_75555337_75556302_75556471_75557983_75558198_75561831_75562173_75563622
ENSMUSG00000032932.16_2	chr16	-	3898	4	ISM	ENSMUSG00000032932.16	ENSMUST00000046283.16	4237	5	1616	173	1577	-173	3prime_fragment	FALSE	canonical	3	50	junction_2	6.37704215656966	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATATTGTTTTCTATCT	5597	False	NA	-3	True	AATAAA	-20	NA	75562093	75552082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_75555337_75556302_75556471_75557983_75558198_75561831
ENSMUSG00000032936.14_0	chr9	+	3241	10	FSM	ENSMUSG00000032936.14	ENSMUST00000192318.2	3253	10	12	0	2	0	multi-exon	FALSE	canonical	3	36	junction_5	6.48264539813992	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTCTGGCCACCCTCT	NA	False	NA	4	True	AATAAA	-12	NA	107813108	107826876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823417_107823538_107823660_107823816_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
ENSMUSG00000032936.14_16	chr9	+	2106	3	ISM	ENSMUSG00000032936.14	ENSMUST00000194206.2	2827	9	1823	1	1823	-1	3prime_fragment	FALSE	canonical	3	41	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCCACCCTCTTGCCT	NA	False	NA	9	True	AATAAA	-17	NA	107824280	107826881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107824360_107824578_107824667_107824942
ENSMUSG00000032936.14_3	chr9	+	3027	11	FSM	ENSMUSG00000032936.14	ENSMUST00000035700.14	3277	11	236	14	2	0	multi-exon	FALSE	canonical	3	33	junction_4	7.3729234364667	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTCTGGCCACCCTCT	NA	False	NA	4	True	AATAAA	-12	NA	107813108	107826876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823064_107823277_107823417_107823538_107823660_107823816_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
ENSMUSG00000032936.14_4	chr9	+	3396	9	NIC	ENSMUSG00000032936.14	novel	3253	10	NA	NA	4	0	intron_retention	FALSE	canonical	3	40	junction_4	5.62222153601225	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTCTGGCCACCCTCT	NA	False	NA	4	True	AATAAA	-12	NA	107813110	107826876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823417_107823538_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
ENSMUSG00000032936.14_5	chr9	+	3189	10	NIC	ENSMUSG00000032936.14	novel	3277	11	NA	NA	10	-1	intron_retention	FALSE	canonical	3	33	junction_4	7.06757506390633	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTCTTGCCTTTGCTTCC	NA	False	NA	17	True	AATAAA	-25	NA	107813116	107826889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823064_107823277_107823417_107823538_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
ENSMUSG00000032936.14_7	chr9	+	3497	8	NIC	ENSMUSG00000032936.14	novel	3253	10	NA	NA	2	0	intron_retention	FALSE	canonical	3	40	junction_4	5.27605294646268	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTCTGGCCACCCTCT	NA	False	NA	4	True	AATAAA	-12	NA	107813098	107826876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823417_107823538_107824119_107824280_107824360_107824578_107824667_107824942
ENSMUSG00000032939.15_0	chr8	+	2685	22	FSM	ENSMUSG00000032939.15	ENSMUST00000079961.14	2707	22	18	4	5	-4	multi-exon	FALSE	canonical	3	950	junction_1	70.7360075664432	2216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACATTCTTTTTCCTTTT	NA	False	NA	22	True	AATAAA	-23	NA	94941209	95041484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
ENSMUSG00000032939.15_1	chr8	+	2738	23	FSM	ENSMUSG00000032939.15	ENSMUST00000212824.2	2928	23	-19	209	5	-3	multi-exon	FALSE	canonical	3	35	junction_1	328.081966678305	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATTCTTTTTCCTTTTT	NA	False	NA	23	True	AATAAA	-24	NA	94941209	95041485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_94941260_94947187_94947240_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
ENSMUSG00000032946.17_0	chr19	+	566	5	NIC	ENSMUSG00000032946.17	novel	573	5	NA	NA	14	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	118.986081118759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGAGTGAGGGTCATGTC	NA	False	NA	11	True	NA	NA	NA	6449499	6453665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6449548_6451745_6451894_6452501_6452605_6453053_6453117_6453461
ENSMUSG00000032946.17_16	chr19	+	3289	4	ISM	ENSMUSG00000032946.17	ENSMUST00000135532.2	1517	6	2380	-2056	-1284	2056	3prime_fragment	FALSE	canonical	3	20	junction_1	14.6363322667334	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTGTGTGTTTGATA	NA	False	NA	NA	False	NA	NA	NA	6457150	6461754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6457353_6458200_6458279_6458477_6458601_6458868
ENSMUSG00000032946.17_17	chr19	+	1139	9	ISM	ENSMUSG00000032946.17	ENSMUST00000167240.8	2192	17	6551	8	-1271	2	3prime_fragment	FALSE	canonical	3	20	junction_1	64.9576785299475	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGATCATCAGCCTAAAA	NA	False	NA	16	True	AATAAA	-18	NA	6457163	6465237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6457353_6458200_6458279_6458477_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
ENSMUSG00000032946.17_20	chr19	+	938	7	FSM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	-23	4	-23	2	multi-exon	FALSE	canonical	3	49	junction_2	53.7297765572209	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGATCATCAGCCTAAAA	NA	False	NA	16	True	AATAAA	-18	NA	6458411	6465237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
ENSMUSG00000032946.17_22	chr19	+	644	5	ISM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	4669	4	4669	2	3prime_fragment	FALSE	canonical	3	149	junction_1	9.57535900110278	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGATCATCAGCCTAAAA	NA	False	NA	16	True	AATAAA	-18	NA	6463103	6465237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
ENSMUSG00000032946.17_23	chr19	+	1266	3	NIC	ENSMUSG00000032946.17	novel	2157	17	NA	NA	4646	0	intron_retention	FALSE	canonical	3	164	junction_1	6	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGGATCATCAGCCTAA	NA	False	NA	14	True	AATAAA	-16	NA	6463080	6465235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6464072_6464821_6464885_6465023
ENSMUSG00000032946.17_3	chr19	+	616	5	NIC	ENSMUSG00000032946.17	novel	648	7	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	104.357558422953	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGAGTGAGGGTCATGT	NA	False	NA	10	True	NA	NA	NA	6449895	6453664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6449995_6451745_6451894_6452501_6452605_6453053_6453117_6453461
ENSMUSG00000032946.17_5	chr19	+	2218	17	NIC	ENSMUSG00000032946.17	novel	919	7	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	85.6383885518054	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGGATCATCAGCCTAA	NA	False	NA	14	True	AATAAA	-16	NA	6449894	6465235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6449995_6451745_6451894_6452501_6452605_6453053_6453117_6453461_6453594_6454329_6454481_6454683_6454858_6454967_6455085_6457070_6457353_6458200_6458279_6458477_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
ENSMUSG00000032946.17_9	chr19	+	524	4	FSM	ENSMUSG00000032946.17	ENSMUST00000113471.3	535	4	7	4	7	1	multi-exon	FALSE	canonical	0	0	junction_2	116.70761186258	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGAGTGAGGGTCATGT	NA	False	NA	10	True	NA	NA	NA	6451738	6453664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6451894_6452501_6452605_6453053_6453117_6453461
ENSMUSG00000032952.12_12	chr3	+	472	1	ISM	ENSMUSG00000032952.12	ENSMUST00000076599.8	2692	11	12029	3	6491	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAAGTTGGTGCCTGTCGT	NA	False	NA	12	True	ATTAAA	-16	NA	103728864	103729336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_103728900_103729300
ENSMUSG00000032952.12_2	chr3	+	2815	10	FSM	ENSMUSG00000032952.12	ENSMUST00000047285.7	2799	10	-19	3	9	-1	multi-exon	FALSE	canonical	3	54	junction_7	8.73053390247253	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTGGTGCCTGTCGTCA	NA	False	NA	14	True	ATTAAA	-18	NA	103716924	103729338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
ENSMUSG00000032952.12_3	chr3	+	2691	11	FSM	ENSMUSG00000032952.12	ENSMUST00000076599.8	2692	11	0	1	0	-1	multi-exon	FALSE	canonical	2	2	junction_1	21.5548138474912	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTGGTGCCTGTCGTCA	NA	False	NA	14	True	ATTAAA	-18	NA	103716835	103729338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103716971_103717183_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
ENSMUSG00000032952.12_4	chr3	+	2730	11	NNC	ENSMUSG00000032952.12	novel	2692	11	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.1099525101254	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGTGCCTGTCGTCAC	NA	False	NA	15	True	ATTAAA	-19	NA	103716926	103729339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_103717100_103717183_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
ENSMUSG00000032959.13_0	chr5	-	1200	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	40	0	-2	0	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	1837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGCGGGTATTTCCTT	NA	False	NA	-17	True	AATAAA	-15	NA	117425650	117420718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
ENSMUSG00000032959.13_5	chr5	-	578	1	ISM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	4394	0	4294	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGCGGGTATTTCCTT	NA	False	NA	-17	True	AATAAA	-15	NA	117421296	117420718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_117420700_117421300
ENSMUSG00000032965.12_0	chr16	+	1591	11	FSM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	-6	1016	-6	-6	multi-exon	FALSE	canonical	3	141	junction_7	10.0915806492343	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTATCATGTTCAGAGA	NA	False	NA	11	True	AATAAA	-7	NA	49519589	49584473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
ENSMUSG00000032965.12_1	chr16	+	1861	5	ISM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	-6	52123	-6	1136	5prime_fragment	FALSE	canonical	3	148	junction_2	8.03118920210451	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATATGTTATAAGCTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	49519589	49533366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201
ENSMUSG00000032966.15_0	chr2	+	1553	5	FSM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	103	2	1	0	multi-exon	FALSE	canonical	3	2063	junction_1	209.807501057517	1795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTGTGTCATGGAGGTT	NA	False	NA	23	True	AATAAA	-24	NA	151384505	151403610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540
ENSMUSG00000032966.15_2	chr2	+	1548	5	NIC	ENSMUSG00000032966.15	novel	894	6	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	76	junction_4	1013.2641252408	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCTCTGTGTCATGGAGG	NA	False	NA	21	True	AATAAA	-22	NA	151384504	151403608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401537_151402540
ENSMUSG00000032977.10_0	chr10	-	2396	6	FSM	ENSMUSG00000032977.10	ENSMUST00000045454.9	2394	6	-7	5	-7	-5	multi-exon	FALSE	canonical	3	238	junction_3	11.7881296226331	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACGTGCAGTCCCCTGG	NA	False	NA	-12	True	AATAAA	-21	NA	77351626	77322499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_77324308_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351436
ENSMUSG00000032977.10_1	chr10	-	2388	6	NNC	ENSMUSG00000032977.10	novel	2394	6	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	93.1351705855527	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGTGCAGTCCCCTGGCT	NA	False	NA	-10	True	AATAAA	-23	NA	77351619	77322497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_77324308_77325831_77325898_77333196_77333348_77339679_77339749_77350139_77350249_77351436
ENSMUSG00000032997.17_0	chr1	-	2907	4	FSM	ENSMUSG00000032997.17	ENSMUST00000079205.14	2892	4	-22	7	14	0	multi-exon	FALSE	canonical	3	112	junction_1	2.16024689946929	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATAATGAGTGGAAACTG	NA	False	NA	NA	False	AATAAA	-13	NA	75455937	75451219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75452871_75453203_75453384_75453888_75454463_75455435
ENSMUSG00000032997.17_1	chr1	-	3084	5	FSM	ENSMUSG00000026211.19_ENSMUSG00000032997.17	ENSMUST00000094818.4	3065	5	-20	1	-20	0	multi-exon	FALSE	canonical	1	2	junction_3	56.2777709224521	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATAATGAGTGGAAACTG	NA	False	NA	NA	False	AATAAA	-13	NA	75455971	75451219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75452871_75453203_75453384_75453888_75454463_75454913_75455057_75455435
ENSMUSG00000032997.17_2	chr1	-	2389	3	FSM	ENSMUSG00000032997.17	ENSMUST00000143496.8	3333	3	943	1	943	-1	multi-exon	FALSE	canonical	3	112	junction_1	2.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAATAATGAGTGGAAACT	NA	False	NA	NA	False	AATAAA	-12	NA	75454447	75451220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75452871_75453203_75453384_75453888
ENSMUSG00000032998.17_1	chr4	+	4766	13	FSM	ENSMUSG00000032998.17	ENSMUST00000044564.15	4789	13	21	2	-3	-2	multi-exon	FALSE	canonical	3	55	junction_6	28.6078611962206	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGCAGCCTGATGGTCT	NA	False	NA	21	True	AATAAA	-17	NA	119396878	119486314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_119397043_119417799_119417861_119430672_119430998_119442946_119443022_119459605_119459690_119467186_119467289_119473704_119473834_119476480_119476662_119477131_119477546_119478797_119478900_119480417_119480610_119482093_119482202_119483485
ENSMUSG00000032998.17_14	chr4	+	3491	5	ISM	ENSMUSG00000032998.17	ENSMUST00000106310.9	4660	12	80402	1	-1252	-1	3prime_fragment	FALSE	canonical	3	103	junction_1	8.8423695919137	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCAGCCTGATGGTCTG	NA	False	NA	22	True	AATAAA	-18	NA	119477286	119486315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_119477546_119478797_119478900_119480417_119480610_119482093_119482202_119483485
ENSMUSG00000032998.17_17	chr4	+	3770	2	ISM	ENSMUSG00000032998.17	ENSMUST00000106310.9	4660	12	84377	1	2723	-1	3prime_fragment	FALSE	canonical	3	123	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCAGCCTGATGGTCTG	NA	False	NA	22	True	AATAAA	-18	NA	119481261	119486315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_119482202_119483485
ENSMUSG00000032998.17_18	chr4	+	2010	1	ISM	ENSMUSG00000032998.17	ENSMUST00000044564.15	4789	13	87448	1	5767	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCAGCCTGATGGTCTG	NA	False	NA	22	True	AATAAA	-18	NA	119484305	119486315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_119484300_119486300
ENSMUSG00000032998.17_2	chr4	+	4663	12	FSM	ENSMUSG00000032998.17	ENSMUST00000106310.9	4660	12	-5	2	-2	-2	multi-exon	FALSE	canonical	3	63	junction_5	23.2197550545519	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGCAGCCTGATGGTCT	NA	False	NA	21	True	AATAAA	-17	NA	119396879	119486314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_119397043_119417799_119417861_119430672_119430998_119442946_119443022_119459605_119459690_119473704_119473834_119476480_119476662_119477131_119477546_119478797_119478900_119480417_119480610_119482093_119482202_119483485
ENSMUSG00000032999.11_1	chr13	-	3611	10	FSM	ENSMUSG00000032999.11	ENSMUST00000037372.8	3527	10	-89	5	-89	0	multi-exon	FALSE	canonical	3	44	junction_9	7.43531778858738	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCTACTGACTTCTAATC	NA	False	NA	-12	True	ATTAAA	-19	NA	65353619	65324929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433
ENSMUSG00000032999.11_2	chr13	-	3541	11	NNC	ENSMUSG00000032999.11	novel	3551	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_10	16.0947196309846	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCTACTGACTTCTAATC	NA	False	NA	-12	True	ATTAAA	-19	NA	65353795	65324929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433_65353531_65353776
ENSMUSG00000032999.11_3	chr13	-	3645	11	NIC	ENSMUSG00000032999.11	novel	3551	11	NA	NA	7	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	17.7302002244758	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTACTGACTTCTAATCT	NA	False	NA	-11	True	ATTAAA	-20	NA	65353750	65324928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433_65353531_65353628
ENSMUSG00000032999.11_4	chr13	-	3547	11	FSM	ENSMUSG00000032999.11	ENSMUST00000221659.2	3551	11	3	1	0	-1	multi-exon	FALSE	canonical	3	10	junction_10	15.0253119767944	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGTCTACTGACTTCTAA	NA	False	NA	-14	True	ATTAAA	-17	NA	65353779	65324931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433_65353531_65353752
ENSMUSG00000032999.11_8	chr13	-	2564	8	ISM	ENSMUSG00000032999.11	ENSMUST00000037372.8	3527	10	10718	7	-4733	-1	3prime_fragment	FALSE	canonical	3	50	junction_3	6.71580529916752	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGTCTACTGACTTCTAA	5814	False	NA	-14	True	ATTAAA	-17	NA	65342812	65324931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799
ENSMUSG00000033004.17_0	chr14	-	5113	28	NNC	ENSMUSG00000033004.17	novel	14620	83	NA	NA	-22	-2	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_15	8.23872218307406	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTTGTGTAAAGTATTT	NA	False	NA	NA	False	AATAAA	-34	NA	103392721	103350848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217_103371502_103372469_103372737_103373994_103374076_103376164_103376255_103376672_103376913_103378306_103378373_103380179_103380405_103380578_103380736_103381689_103381851_103383335_103383486_103384268_103384469_103385943_103386102_103389555_103389724_103391361_103391607_103392181_103392352_103392559
ENSMUSG00000033004.17_13	chr14	-	5583	28	ISM	ENSMUSG00000033004.17	ENSMUST00000160758.8	14620	83	190659	3	-496	-3	3prime_fragment	FALSE	canonical	1	2	junction_23	9.39003937724293	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTTGTGTAAAGTATT	NA	False	NA	NA	False	AATAAA	-33	NA	103393195	103350849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217_103371502_103372469_103372737_103373994_103374076_103376164_103376255_103376672_103376913_103378306_103378373_103380179_103380405_103380578_103380736_103381689_103381851_103383335_103383486_103384268_103384466_103385943_103386102_103389555_103389724_103391361_103391607_103392181_103392352_103392559
ENSMUSG00000033004.17_14	chr14	-	3059	17	ISM	ENSMUSG00000033004.17	ENSMUST00000160758.8	14620	83	207133	3	12929	-3	3prime_fragment	FALSE	canonical	3	10	junction_15	8.51813323152438	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTTGTGTAAAGTATT	NA	False	NA	NA	False	AATAAA	-33	NA	103376721	103350849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217_103371502_103372469_103372737_103373994_103374076_103376164_103376255_103376672
ENSMUSG00000033004.17_17	chr14	-	799	1	ISM	ENSMUSG00000033004.17	ENSMUST00000161008.8	5099	28	41052	2	1185	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTTGTGTAAAGTATTT	NA	False	NA	NA	False	AATAAA	-34	NA	103351647	103350848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_103350800_103351600
ENSMUSG00000033004.17_23	chr14	-	3133	17	ISM	ENSMUSG00000033004.17	ENSMUST00000161008.8	5099	28	15914	2	12865	-2	3prime_fragment	FALSE	canonical	3	12	junction_15	8.23459736417027	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTTGTGTAAAGTATTT	NA	False	NA	NA	False	AATAAA	-34	NA	103376785	103350848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217_103371502_103372469_103372737_103373994_103374076_103376155_103376255_103376672
ENSMUSG00000033004.17_31	chr14	-	3999	24	ISM	ENSMUSG00000033004.17	ENSMUST00000159855.8	15233	85	12	129494	12	19909	5prime_fragment	FALSE	canonical	2	6	junction_21	4.19018567066322	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTTTGTCCTCTATGA	NA	False	NA	NA	False	AATAAA	-12	NA	103584224	103480340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_103480653_103485182_103485337_103485797_103486003_103489844_103489963_103497631_103497714_103500137_103500258_103506793_103506902_103513224_103513327_103513808_103513955_103520033_103520239_103522685_103522845_103524641_103524807_103525978_103526184_103526979_103527057_103528453_103528593_103528724_103528799_103532595_103532693_103534328_103534401_103534615_103534859_103536102_103536300_103543625_103543780_103551734_103551951_103561105_103561182_103583651
ENSMUSG00000033004.17_40	chr14	-	2890	15	ISM	ENSMUSG00000033004.17	ENSMUST00000161008.8	5099	28	18648	9	15599	-9	3prime_fragment	FALSE	canonical	3	23	junction_3	6.08779307218929	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCTAATATTTGTGTAA	NA	False	NA	NA	False	AATAAA	-27	NA	103374051	103350855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217_103371502_103372469_103372737_103373994
ENSMUSG00000033004.17_51	chr14	-	4052	20	ISM	ENSMUSG00000033004.17	ENSMUST00000160758.8	14620	83	137556	41902	-17247	0	internal_fragment	FALSE	canonical	2	12	junction_9	4.11537216891045	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAGAATAAAAAAACA	NA	False	NA	NA	False	AAAAAG	-11	NA	103446298	103392748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_103394204_103410002_103410126_103411222_103411356_103412201_103412427_103419789_103419931_103422267_103422385_103423019_103423118_103425934_103426051_103429002_103429059_103432019_103432230_103433673_103433819_103434680_103434854_103436075_103436126_103436868_103436957_103437509_103437629_103438647_103438874_103441757_103441977_103442612_103442714_103444071_103444215_103446184
ENSMUSG00000033004.17_58	chr14	-	2408	13	ISM	ENSMUSG00000033004.17	ENSMUST00000161008.8	5099	28	21363	2	18314	-2	3prime_fragment	FALSE	canonical	3	23	junction_3	6.12995831053433	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTTGTGTAAAGTATTT	184	False	NA	NA	False	AATAAA	-34	NA	103371336	103350848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217
ENSMUSG00000033009.16_1	chr8	+	5239	13	FSM	ENSMUSG00000033009.16	ENSMUST00000109556.9	5310	13	65	6	0	-6	multi-exon	FALSE	canonical	3	129	junction_2	14.2971928091574	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCTGCTATGGTGGTAA	NA	False	NA	1	True	AATAAA	-11	NA	94763890	94794543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_94764071_94765592_94765739_94773899_94773947_94778702_94778804_94781231_94781349_94781880_94781973_94782163_94782293_94782671_94782786_94784343_94784424_94784677_94784992_94789594_94789718_94790096_94790156_94790806
ENSMUSG00000033009.16_26	chr8	+	4109	4	ISM	ENSMUSG00000033009.16	ENSMUST00000060632.8	5214	13	20884	5	3116	-5	3prime_fragment	FALSE	canonical	3	144	junction_3	9.80929264637477	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGCTATGGTGGTAAT	3629	False	NA	2	True	AATAAA	-12	NA	94784802	94794544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_94784992_94789594_94789718_94790096_94790156_94790806
ENSMUSG00000033009.16_27	chr8	+	2908	1	ISM	ENSMUSG00000033009.16	ENSMUST00000109556.9	5310	13	27811	5	9950	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGCTATGGTGGTAAT	NA	False	NA	2	True	AATAAA	-12	NA	94791636	94794544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_94791600_94794500
ENSMUSG00000033009.16_3	chr8	+	4209	12	NIC	ENSMUSG00000033009.16	novel	5310	13	NA	NA	-1	-891	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	45.1189428983488	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGGAGTATTTTTAACG	NA	False	NA	NA	False	AATAAA	-28	NA	94763889	94793658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_94764071_94773899_94773947_94778702_94778804_94781231_94781349_94781880_94781973_94782163_94782293_94782671_94782786_94784343_94784424_94784677_94784992_94789594_94789718_94790096_94790156_94790806
ENSMUSG00000033014.13_0	chr3	+	5198	20	FSM	ENSMUSG00000033014.13	ENSMUST00000029444.13	8875	20	448	3229	-138	-16	multi-exon	TRUE	canonical	3	95	junction_7	11.658340255239	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATTATTACACAGATTC	NA	False	NA	NA	False	AATAAA	-10	NA	103187056	103262862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103187763_103217624_103217744_103218139_103218285_103218696_103218830_103228860_103228978_103231960_103232076_103233403_103233551_103234107_103234226_103236353_103236629_103237395_103237561_103238925_103239124_103244714_103244848_103246595_103246660_103248875_103249036_103251609_103251960_103253960_103254085_103255636_103255712_103259318_103259472_103260882_103260934_103261012
ENSMUSG00000033014.13_31	chr3	+	2485	6	ISM	ENSMUSG00000033014.13	ENSMUST00000029444.13	8875	20	65120	3228	2731	-15	3prime_fragment	FALSE	canonical	3	101	junction_4	11.4960862905599	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATTATTACACAGATTCC	NA	False	NA	NA	False	AATAAA	-11	NA	103251728	103262863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_103251960_103253960_103254085_103255636_103255712_103259318_103259472_103260882_103260934_103261012
ENSMUSG00000033014.13_37	chr3	+	4210	1	ISM	ENSMUSG00000033014.13	ENSMUST00000029444.13	8875	20	75254	19	12865	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAAGTTTTCAAATGAAT	NA	False	NA	NA	False	ATTAAA	-13	NA	103261862	103266072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_103261900_103266100
ENSMUSG00000033014.13_4	chr3	+	5146	19	FSM	ENSMUSG00000033014.13	ENSMUST00000106860.6	5025	19	-139	18	-139	-18	multi-exon	FALSE	canonical	3	12	junction_18	26.2196914974647	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAATTATTACACAGAT	NA	False	NA	NA	False	AATAAA	-8	NA	103187055	103262860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103187763_103217624_103217744_103218139_103218285_103218696_103218830_103228860_103228978_103231960_103232076_103233403_103233551_103234107_103234226_103236353_103236629_103237395_103237561_103238925_103239124_103244714_103244848_103246595_103246660_103248875_103249036_103251609_103251960_103253960_103254085_103255636_103255712_103259318_103259472_103261012
ENSMUSG00000033016.17_0	chr18	-	4076	8	FSM	ENSMUSG00000033016.17	ENSMUST00000035800.8	4505	8	43	386	43	-386	multi-exon	FALSE	canonical	0	0	junction_2	1.0690449676497	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTCCTGTGTTCCGTGTT	NA	False	NA	NA	False	AATAAA	-23	NA	80751345	80691035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_80693180_80696720_80696777_80706509_80706651_80708496_80708670_80710172_80710376_80725373_80725534_80740769_80741872_80751248
ENSMUSG00000033020.8_0	chr15	+	541	5	FSM	ENSMUSG00000033020.8	ENSMUST00000230271.2	885	5	336	8	-6	2	multi-exon	FALSE	canonical	3	2023	junction_4	39.9335385359224	384	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCTCTCCCCGTTACCT	NA	False	NA	20	True	AATAAA	-14	NA	79025544	79035966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035608_79035788
ENSMUSG00000033021.17_0	chr1	+	1495	13	FSM	ENSMUSG00000033021.17	ENSMUST00000037796.14	1539	13	43	1	5	0	multi-exon	FALSE	canonical	3	122	junction_1	48.5514475124641	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412616	75419817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75412656_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUSG00000033021.17_26	chr1	+	1787	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	-6	0	intron_retention	FALSE	canonical	3	14	junction_1	75.8797934601535	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412619	75419817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75412957_75413427_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUSG00000033021.17_4	chr1	+	1490	13	NIC	ENSMUSG00000033021.17	novel	1539	13	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	77.4526288916149	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGCCAGCTTGGACTCCT	NA	False	NA	10	True	AATAAA	-14	NA	75412613	75419815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75412656_75413427_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUSG00000033021.17_7	chr1	+	1790	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	-3	0	intron_retention	FALSE	canonical	3	82	junction_1	58.385869199852	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412622	75419817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUSG00000033022.9_0	chr18	-	1530	5	FSM	ENSMUSG00000033022.9	ENSMUST00000035804.9	1595	5	42	23	1	-12	multi-exon	FALSE	canonical	3	151	junction_1	18.3166590840142	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGAAAAGAACTACACATT	2619	False	NA	-15	True	AATAAA	-7	NA	46861420	46846282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
ENSMUSG00000033022.9_2	chr18	-	1531	5	NIC	ENSMUSG00000033022.9	novel	1595	5	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	1	4	junction_3	76.1019053637949	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAACTACACATTGCCT	2619	False	NA	-11	True	AATAAA	-11	NA	46861420	46846278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_46847029_46848663_46848834_46853353_46853506_46856384_46856463_46861039
ENSMUSG00000033031.14_0	chr16	+	3501	21	FSM	ENSMUSG00000033031.14	ENSMUST00000048374.6	3974	21	17	456	17	-402	multi-exon	FALSE	canonical	2	173	junction_10	25.4173169315725	346	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTCTTTTGTTCTTTGC	NA	False	NA	18	True	ATTAAA	-19	NA	48814567	48839612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48826211_48827412_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306_48836421_48836641_48836725_48837714_48837855_48838737
ENSMUSG00000033032.16_0	chr18	-	1538	3	ISM	ENSMUSG00000033032.16	ENSMUST00000154876.8	2842	16	50682	3	50682	-3	3prime_fragment	FALSE	canonical	3	21	junction_1	5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGGTCAGAGGGTAGCT	NA	False	NA	-2	True	AATAAA	-18	NA	61869000	61863334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_61864382_61866774_61866904_61868638
ENSMUSG00000033032.16_3	chr18	-	3398	19	FSM	ENSMUSG00000033032.16	ENSMUST00000120472.2	3444	19	43	3	1	-3	multi-exon	TRUE	canonical	1	2	junction_17	8.65740245593045	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGGTCAGAGGGTAGCT	NA	False	NA	-2	True	AATAAA	-18	NA	61919730	61863334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870566_61870679_61871754_61871828_61872194_61872341_61874700_61874913_61876348_61876502_61876737_61876832_61879848_61879942_61881766_61881947_61884736_61884949_61885579_61885679_61888633_61888746_61889910_61890006_61890722_61890807_61891670_61891800_61919646
ENSMUSG00000033032.16_4	chr18	-	1698	5	NNC	ENSMUSG00000033032.16	novel	2842	16	NA	NA	49251	-3	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	5.2618912949623	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGGTCAGAGGGTAGCT	NA	False	NA	-2	True	AATAAA	-18	NA	61870431	61863334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870253
ENSMUSG00000033033.11_1	chr19	-	2167	3	FSM	ENSMUSG00000033033.11	ENSMUST00000035822.2	2458	3	-125	416	-125	-416	multi-exon	FALSE	canonical	2	8	junction_2	1	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCTAGACAGGGTATT	5204	False	NA	-8	True	GATAAA	-15	NA	47126858	47120677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_47121613_47123787_47124505_47126343
ENSMUSG00000033033.11_2	chr19	-	1269	2	ISM	ENSMUSG00000033033.11	ENSMUST00000035822.2	2458	3	2612	416	2612	-416	3prime_fragment	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCTAGACAGGGTATT	7941	False	NA	-8	True	GATAAA	-15	NA	47124121	47120677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_47121613_47123787
ENSMUSG00000033036.10_0	chr5	+	734	1	FSM	ENSMUSG00000033036.10	ENSMUST00000122204.3	774	1	16	24	13	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATGCAAAAAACAAAACAAA	NA	False	NA	NA	False	AATAAA	-12	NA	44070501	44071235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_44070500_44071200
ENSMUSG00000033039.11_0	chr15	+	3086	17	NNC	ENSMUSG00000033039.11	novel	6712	16	NA	NA	-30	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	13.4994212838921	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAACCAGTTGTGACTTA	6001	False	NA	NA	False	NA	NA	NA	78993133	79017498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_78993630_78998854_78998904_78999229_78999372_79003935_79004028_79004958_79005102_79006746_79007187_79008700_79008759_79009449_79009680_79009733_79009875_79011126_79011534_79014008_79014144_79014662_79014790_79014908_79015000_79015137_79015212_79015973_79016089_79016252_79016300_79017199
ENSMUSG00000033039.11_14	chr15	+	4351	6	ISM	ENSMUSG00000033039.11	ENSMUST00000229694.2	1907	9	5411	-3609	-1223	0	3prime_fragment	FALSE	canonical	3	40	junction_5	3.61109401705356	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATCTGCAGTGTGGGCCT	9180	False	NA	9	True	AATAAA	-18	NA	79014662	79021096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_79014790_79014908_79015000_79015137_79015212_79015973_79016089_79016252_79016300_79017199
ENSMUSG00000033039.11_15	chr15	+	2405	1	ISM	ENSMUSG00000033039.11	ENSMUST00000040320.10	6712	16	25526	6	2769	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAATCTGCAGTGTGGGC	NA	False	NA	7	True	AATAAA	-16	NA	79018689	79021094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_79018700_79021100
ENSMUSG00000033039.11_22	chr15	+	4078	3	FSM	ENSMUSG00000033039.11	ENSMUST00000230202.2	700	3	28	-3406	28	-6	multi-exon	FALSE	canonical	3	40	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACTGAATCTGCAGTGT	NA	False	NA	3	True	AATAAA	-12	NA	79015948	79021090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79016089_79016252_79016300_79017199
ENSMUSG00000033039.11_3	chr15	+	3140	16	FSM	ENSMUSG00000033039.11	ENSMUST00000040320.10	6712	16	-30	3602	-30	11	multi-exon	FALSE	canonical	3	16	junction_2	11.2514690398879	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAACCAGTTGTGACTTA	6001	False	NA	NA	False	NA	NA	NA	78993133	79017498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78993630_78998854_78998904_78999229_78999372_79003935_79004028_79004958_79005102_79006746_79007187_79008700_79008759_79009449_79009875_79011126_79011534_79014008_79014144_79014662_79014790_79014908_79015000_79015137_79015212_79015973_79016089_79016252_79016300_79017199
ENSMUSG00000033047.6_0	chr15	+	1886	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	50	6	-19	-6	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	2068	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGGTTTGTGGTCTCAT	NA	False	NA	24	True	AGTAAA	-14	NA	78959428	78978599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
ENSMUSG00000033054.8_0	chr9	+	5878	18	FSM	ENSMUSG00000033054.8	ENSMUST00000035850.8	6062	18	8	176	8	-176	multi-exon	TRUE	canonical	3	111	junction_15	17.5635277962748	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTTACCAGTTTGGATT	NA	False	NA	4	True	AATAAA	-12	NA	53448354	53485466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_53448489_53456467_53456587_53460209_53460271_53461337_53461411_53462897_53462939_53463549_53463775_53465184_53465273_53466356_53466442_53467687_53467780_53467867_53467956_53469424_53469522_53470381_53470508_53473341_53474977_53478016_53478133_53478215_53478325_53481186_53481248_53481346_53482479_53483870
ENSMUSG00000033054.8_25	chr9	+	3660	6	ISM	ENSMUSG00000033054.8	ENSMUST00000035850.8	6062	18	25787	373	-700	-373	3prime_fragment	FALSE	canonical	3	111	junction_3	18.6225669551756	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAACAACAAAAACGTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	53474133	53485269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_53474977_53478016_53478133_53478215_53478325_53481186_53481248_53481346_53482479_53483870
ENSMUSG00000033054.8_29	chr9	+	2053	2	ISM	ENSMUSG00000033054.8	ENSMUST00000035850.8	6062	18	33676	175	7189	-175	3prime_fragment	FALSE	canonical	3	119	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTACCAGTTTGGATTT	NA	False	NA	5	True	AATAAA	-13	NA	53482022	53485467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_53482479_53483870
ENSMUSG00000033054.8_7	chr9	+	5705	19	NNC	ENSMUSG00000033054.8	novel	6062	18	NA	NA	11	-175	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_13	32.2756740565161	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTACCAGTTTGGATTT	NA	False	NA	5	True	AATAAA	-13	NA	53448357	53485467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_53448489_53456467_53456587_53460209_53460271_53461337_53461411_53462897_53462939_53463549_53463775_53465184_53465273_53466356_53466442_53467687_53467780_53467867_53467956_53469424_53469522_53470381_53470508_53473341_53474284_53474454_53474977_53478016_53478133_53478215_53478325_53481186_53481248_53481346_53482479_53483870
ENSMUSG00000033055.13_1	chr15	-	1896	8	FSM	ENSMUSG00000033055.13	ENSMUST00000040676.11	1904	8	0	8	0	2	multi-exon	FALSE	canonical	3	102	junction_6	6.03391773769796	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGGTTGTTGTTTTTTG	NA	False	NA	-8	True	NA	NA	NA	78947085	78937301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_78938285_78938695_78938804_78939491_78939617_78939694_78939743_78940213_78940286_78942154_78942254_78945363_78945412_78946672
ENSMUSG00000033055.13_12	chr15	-	1973	7	NIC	ENSMUSG00000033055.13	novel	1904	8	NA	NA	1	2	intron_retention	FALSE	canonical	3	102	junction_5	6.51707159867238	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGGTTGTTGTTTTTTG	NA	False	NA	-8	True	NA	NA	NA	78947084	78937301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_78938285_78938695_78938804_78939491_78939743_78940213_78940286_78942154_78942254_78945363_78945412_78946672
ENSMUSG00000033055.13_15	chr15	-	1890	8	FSM	ENSMUSG00000033055.13	ENSMUST00000153003.3	1034	8	-48	-808	1	2	multi-exon	FALSE	canonical	1	2	junction_6	39.0143877176048	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGGTTGTTGTTTTTTG	NA	False	NA	-8	True	NA	NA	NA	78947084	78937301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_78938285_78938695_78938804_78939491_78939617_78939694_78939743_78940213_78940286_78942154_78942249_78945363_78945412_78946672
ENSMUSG00000033059.8_0	chr2	+	3870	20	FSM	ENSMUSG00000033059.8	ENSMUST00000045441.8	3909	20	28	11	28	-11	multi-exon	FALSE	canonical	3	120	junction_10	16.3671517531211	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGTCACTGTGGTAT	NA	False	NA	12	True	ATTAAA	-12	NA	150628682	150673667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_150629031_150643457_150643560_150648112_150648192_150650716_150650821_150653173_150653306_150655310_150655423_150655840_150655924_150656905_150657050_150657537_150657631_150658669_150658817_150659557_150659722_150660765_150660881_150661793_150661896_150662654_150662803_150665895_150665955_150668248_150668391_150669024_150669233_150670363_150670499_150671547_150671615_150672281
ENSMUSG00000033059.8_19	chr2	+	3070	12	ISM	ENSMUSG00000033059.8	ENSMUST00000045441.8	3909	20	28579	11	-8	-11	3prime_fragment	FALSE	canonical	3	120	junction_2	17.093810198649	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGTCACTGTGGTAT	NA	False	NA	12	True	ATTAAA	-12	NA	150657233	150673667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_150657631_150658669_150658817_150659557_150659722_150660765_150660881_150661793_150661896_150662654_150662803_150665895_150665955_150668248_150668391_150669024_150669233_150670363_150670499_150671547_150671615_150672281
ENSMUSG00000033060.17_0	chr14	+	4980	28	NIC	ENSMUSG00000033060.17	novel	6092	31	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	5.95755448303927	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAATGCTTTTTAAAACT	NA	False	NA	16	True	AATAAA	-16	NA	101967370	102172123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_101967662_102031676_102031748_102044889_102044960_102078307_102078415_102112887_102112919_102114241_102114356_102118238_102118438_102121597_102121851_102126112_102126143_102133902_102134021_102135992_102136136_102137506_102138081_102139499_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155066_102155093_102155375_102155481_102156047_102156141_102156644_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005_102170109_102171331
ENSMUSG00000033060.17_13	chr14	+	3760	19	ISM	ENSMUSG00000033060.17	ENSMUST00000159314.8	5774	27	55873	0	12402	0	3prime_fragment	FALSE	canonical	3	16	junction_2	6.04739511313102	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAATGCTTTTTAAAACT	NA	False	NA	16	True	AATAAA	-16	NA	102133956	102172123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_102134021_102135992_102136136_102137506_102138081_102139499_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155066_102155093_102155375_102155481_102156047_102156141_102156644_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005_102170109_102171331
ENSMUSG00000033060.17_15	chr14	+	3688	18	ISM	ENSMUSG00000033060.17	ENSMUST00000159314.8	5774	27	57909	8	14438	-8	3prime_fragment	FALSE	canonical	3	16	junction_1	5.94321456014828	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCATTTAAGGAATGCTTT	NA	False	NA	8	True	AATAAA	-8	NA	102135992	102172115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_102136136_102137506_102138081_102139499_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155066_102155093_102155375_102155481_102156047_102156141_102156644_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005_102170109_102171331
ENSMUSG00000033060.17_17	chr14	+	3022	17	ISM	ENSMUSG00000033060.17	ENSMUST00000159314.8	5774	27	59953	1	16482	-1	3prime_fragment	FALSE	canonical	3	16	junction_4	5.68853012649138	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAATGCTTTTTAAAAC	NA	False	NA	15	True	AATAAA	-15	NA	102138036	102172122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_102138081_102139499_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155066_102155093_102155375_102155481_102156047_102156141_102156644_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005_102170109_102171331
ENSMUSG00000033060.17_2	chr14	+	5100	29	NIC	ENSMUSG00000033060.17	novel	6092	31	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_26	7.55751754404655	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAATGCTTTTTAAAACT	NA	False	NA	16	True	AATAAA	-16	NA	101967359	102172123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_101967662_102031676_102031748_102044889_102044960_102078307_102078415_102112887_102112919_102114241_102114356_102118238_102118438_102121597_102121851_102126112_102126143_102133902_102134021_102135992_102136136_102137506_102138081_102139499_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155066_102155093_102155375_102155481_102156047_102156141_102156644_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102168607_102168717_102170005_102170109_102171331
ENSMUSG00000033060.17_20	chr14	+	1841	7	ISM	ENSMUSG00000033060.17	ENSMUST00000159314.8	5774	27	78671	-4	242	2	3prime_fragment	FALSE	canonical	3	21	junction_6	4.88762609953839	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCTTTTTAAAACTCTTT	NA	False	NA	20	True	AATAAA	-20	NA	102156754	102172127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005_102170109_102171331
ENSMUSG00000033060.17_21	chr14	+	3139	6	ISM	ENSMUSG00000033060.17	ENSMUST00000159314.8	5774	27	78605	-13	176	-10	intron_retention	FALSE	canonical	3	29	junction_5	2.78567765543682	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACTCTTTATTGTTTCT	NA	False	NA	29	True	AATAAA	-29	NA	102156688	102172136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005
ENSMUSG00000033060.17_23	chr14	+	1424	5	ISM	ENSMUSG00000033060.17	ENSMUST00000159314.8	5774	27	81463	0	3034	0	3prime_fragment	FALSE	canonical	3	21	junction_4	5.97390157267426	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAATGCTTTTTAAAACT	NA	False	NA	16	True	AATAAA	-16	NA	102159546	102172123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_102159586_102163531_102163746_102166611_102166888_102170005_102170109_102171331
ENSMUSG00000033060.17_25	chr14	+	1105	3	ISM	ENSMUSG00000033060.17	ENSMUST00000159314.8	5774	27	88594	0	-19	0	3prime_fragment	FALSE	canonical	3	21	junction_2	4	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAATGCTTTTTAAAACT	NA	False	NA	16	True	AATAAA	-16	NA	102166677	102172123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_102166888_102170005_102170109_102171331
ENSMUSG00000033060.17_27	chr14	+	549	1	ISM	ENSMUSG00000033060.17	ENSMUST00000100337.10	6092	31	204186	19	4882	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCTTTTTAAAACTCTTT	NA	False	NA	20	True	AATAAA	-20	NA	102171578	102172127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_102171600_102172100
ENSMUSG00000033060.17_35	chr14	+	2974	16	ISM	ENSMUSG00000033060.17	ENSMUST00000159314.8	5774	27	61420	1	-17009	-1	3prime_fragment	FALSE	canonical	3	16	junction_3	5.6975628317924	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAATGCTTTTTAAAAC	NA	False	NA	15	True	AATAAA	-15	NA	102139503	102172122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155066_102155093_102155375_102155481_102156047_102156141_102156644_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005_102170109_102171331
ENSMUSG00000033060.17_5	chr14	+	6210	27	NIC	ENSMUSG00000033060.17	novel	6092	31	NA	NA	-25	2	intron_retention	FALSE	canonical	3	14	junction_7	6.06486144760935	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCTTTTTAAAACTCTTT	NA	False	NA	20	True	AATAAA	-20	NA	101967367	102172127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_101967662_102031676_102031748_102044889_102044960_102078307_102078415_102112887_102112919_102114241_102114356_102118238_102118438_102121597_102121851_102126112_102126143_102133902_102134021_102135992_102136136_102137506_102138081_102139499_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155066_102155093_102155375_102155481_102156047_102156141_102156644_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005
ENSMUSG00000033063.9_2	chr13	-	2811	14	ISM	ENSMUSG00000033063.9	ENSMUST00000091554.6	6344	24	-306	27796	-306	-15349	5prime_fragment	FALSE	canonical	0	0	junction_2	1.47564046871161	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGATCAGACAGATTATT	744	False	NA	NA	False	AATAAA	-44	NA	65052075	64911791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_64912096_64919769_64919971_64920482_64920603_64926603_64926711_64929539_64929712_64933032_64933174_64935516_64935779_64940112_64940260_64941042_64941228_64941977_64942182_64946880_64947029_65006411_65006606_65035506_65035618_65051560
ENSMUSG00000033065.15_19	chr15	+	2443	19	ISM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	12376	-6	12376	0	3prime_fragment	FALSE	canonical	3	50	junction_1	15.3724340426317	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	NA	False	NA	7	True	AATAAA	-19	NA	98018722	98030328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
ENSMUSG00000033065.15_2	chr15	+	2798	23	FSM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	87	-6	87	0	multi-exon	FALSE	canonical	0	0	junction_1	24.5577830991277	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	1683	False	NA	7	True	AATAAA	-19	NA	98006433	98030328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_98006493_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
ENSMUSG00000033065.15_22	chr15	+	2335	19	NNC	ENSMUSG00000033065.15	novel	2816	23	NA	NA	12573	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	22.6396898290492	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	NA	False	NA	7	True	AATAAA	-19	NA	98018919	98030328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_98018951_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
ENSMUSG00000033065.15_26	chr15	+	2435	18	ISM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	12600	-6	12600	0	3prime_fragment	FALSE	canonical	3	75	junction_7	12.0037479729426	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	NA	False	NA	7	True	AATAAA	-19	NA	98018946	98030328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
ENSMUSG00000033065.15_42	chr15	+	2570	20	ISM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	10927	-4	10927	-2	3prime_fragment	FALSE	canonical	3	50	junction_2	16.32834830743	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGGCGCTCTTGTTA	NA	False	NA	5	True	AATAAA	-17	NA	98017273	98030326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
ENSMUSG00000033066.17_0	chr11	+	3449	14	FSM	ENSMUSG00000033066.18	ENSMUST00000108681.9	1941	14	2	-1510	2	-4	multi-exon	FALSE	canonical	1	4	junction_8	3.36357093985776	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGCTAGTGGTAATTTG	1125	False	NA	1	True	ATTAAA	-10	NA	67345918	67575796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_67346601_67493933_67494055_67520435_67520517_67534106_67534193_67543684_67543739_67550844_67550935_67552876_67552993_67556213_67556289_67561419_67561499_67565063_67565193_67566424_67566549_67572050_67572131_67573460_67573560_67574163
ENSMUSG00000033066.17_3	chr11	+	4850	2	NNC	ENSMUSG00000033066.18	novel	2968	15	NA	NA	1848	3951	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTAAATGTTGACGGCGT	3604	False	NA	3	True	ATTAAA	-13	NA	67574845	67579751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_67577784_67577839
ENSMUSG00000033066.17_4	chr11	+	1544	1	Intergenic	novelGene_7243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATATAAGTTGTAAGTAAC	6848	False	NA	NA	False	AATAAA	-8	NA	67578089	67579633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_67578100_67579600
ENSMUSG00000033068.17_1	chr2	+	2498	14	FSM	ENSMUSG00000033068.17	ENSMUST00000094467.6	2540	14	39	3	0	-3	multi-exon	FALSE	canonical	3	112	junction_1	18.2695141678424	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTCTTTTGCCTCATTA	NA	False	NA	9	True	AATAAA	-14	NA	150591000	150613592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612548
ENSMUSG00000033068.17_3	chr2	+	2495	14	NNC	ENSMUSG00000033068.17	novel	2540	14	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	38.7806759662898	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTTTTGCCTCATTAG	NA	False	NA	10	True	AATAAA	-15	NA	150591001	150613593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_150591154_150594932_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612548
ENSMUSG00000033075.18_0	chr15	-	3793	19	NIC	ENSMUSG00000033075.18	novel	3806	19	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	3	74	junction_10	47.9875562573836	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTTGCGGGCCCTTTCA	6339	False	NA	-5	True	AATAAA	-12	NA	97991254	97939113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97991163
ENSMUSG00000033075.18_1	chr15	-	3686	18	FSM	ENSMUSG00000033075.18	ENSMUST00000044189.16	6575	18	403	2486	29	2	multi-exon	FALSE	canonical	3	84	junction_17	35.6797559226372	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCGGGCCCTTTCACAG	6371	False	NA	-2	True	AATAAA	-15	NA	97991222	97939110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97991163
ENSMUSG00000033075.18_11	chr15	-	4597	5	ISM	ENSMUSG00000033075.18	ENSMUST00000180461.2	568	6	642	-4121	642	-21	3prime_fragment	FALSE	canonical	3	184	junction_2	23.4454153300811	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTGCTTTGACTGGGA	NA	False	NA	-19	True	AATAAA	-15	NA	97946214	97936645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066
ENSMUSG00000033075.18_12	chr15	-	4290	19	FSM	ENSMUSG00000033075.18	ENSMUST00000180657.2	3806	19	19	-503	19	2	multi-exon	FALSE	canonical	3	73	junction_18	49.2407790452959	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCGGGCCCTTTCACAG	6480	False	NA	-2	True	AATAAA	-15	NA	97991113	97939110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97990528
ENSMUSG00000033075.18_2	chr15	-	2787	1	ISM	ENSMUSG00000033075.18	ENSMUST00000044189.16	6575	18	52197	17	7428	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTTTGACTGGGAACTC	NA	False	NA	-15	True	AATAAA	-19	NA	97939428	97936641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_97936600_97939400
ENSMUSG00000033075.18_4	chr15	-	4227	18	NIC	ENSMUSG00000033075.18	novel	3806	19	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	73	junction_17	37.6096321314865	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTTGCGGGCCCTTTCA	6462	False	NA	-5	True	AATAAA	-12	NA	97991131	97939113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97990528
ENSMUSG00000033075.18_63	chr15	-	2438	2	FSM	ENSMUSG00000033075.18	ENSMUST00000182611.2	853	2	-370	-1215	-6	581	multi-exon	FALSE	canonical	3	12	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTACCTTGGTCTTGG	6455	False	NA	NA	False	NA	NA	NA	97991138	97985856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_97987685_97990528
ENSMUSG00000033080.10_1	chr2	-	2155	5	FSM	ENSMUSG00000033080.10	ENSMUST00000046095.10	3791	5	342	1294	342	-1294	multi-exon	FALSE	canonical	0	0	junction_1	1.29903810567666	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTACTTCCTGGCCCCT	NA	False	NA	NA	False	AATAAA	-20	NA	150530938	150523915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_150525187_150526330_150526509_150527513_150527638_150528067_150528147_150530435
ENSMUSG00000033083.17_0	chr14	-	2485	2	ISM	ENSMUSG00000033083.17	ENSMUST00000161304.2	3823	8	15616	0	15616	0	3prime_fragment	FALSE	canonical	3	25	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTGAGCTTTTTTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	101685043	101679803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_101682208_101684962
ENSMUSG00000033083.17_13	chr14	-	3013	5	ISM	ENSMUSG00000033083.17	ENSMUST00000161304.2	3823	8	8275	0	8275	0	3prime_fragment	FALSE	canonical	3	25	junction_1	1.80277563773199	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTGAGCTTTTTTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	101692384	101679803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_101682208_101684962_101685140_101686637_101686808_101689853_101690014_101692282
ENSMUSG00000033083.17_2	chr14	-	6276	19	FSM	ENSMUSG00000033083.17	ENSMUST00000161991.8	6483	19	199	8	-2	0	multi-exon	FALSE	canonical	3	15	junction_15	4.49553962758753	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTGAGCTTTTTTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	101846270	101679803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_101682208_101684962_101685140_101686637_101686808_101689853_101690014_101692282_101692528_101695501_101695661_101696170_101696330_101700310_101700521_101703036_101703201_101714415_101714643_101716566_101716642_101724863_101724984_101726947_101727059_101727288_101727381_101731781_101731915_101738447_101738553_101742543_101742634_101744523_101745127_101845398
ENSMUSG00000033083.17_3	chr14	-	5216	18	ISM	ENSMUSG00000033083.17	ENSMUST00000161991.8	6483	19	101531	8	-176	0	3prime_fragment	FALSE	canonical	3	15	junction_15	4.62054985568364	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTGAGCTTTTTTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	101744938	101679803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_101682208_101684962_101685140_101686637_101686808_101689853_101690014_101692282_101692528_101695501_101695661_101696170_101696330_101700310_101700521_101703036_101703201_101714415_101714643_101716566_101716642_101724863_101724984_101726947_101727059_101727288_101727381_101731781_101731915_101738447_101738553_101742543_101742634_101744523
ENSMUSG00000033083.17_5	chr14	-	3496	8	FSM	ENSMUSG00000033083.17	ENSMUST00000161304.2	3823	8	327	0	327	0	multi-exon	FALSE	canonical	3	22	junction_6	3.22616851161035	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTGAGCTTTTTTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	101700332	101679803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_101682208_101684962_101685140_101686637_101686808_101689853_101690014_101692282_101692528_101695501_101695661_101696170_101696330_101700310
ENSMUSG00000033083.17_6	chr14	-	2280	1	ISM	ENSMUSG00000033083.17	ENSMUST00000161991.8	6483	19	164386	8	18576	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTGAGCTTTTTTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	101682083	101679803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_101679800_101682100
ENSMUSG00000033083.17_9	chr14	-	3387	7	ISM	ENSMUSG00000033083.17	ENSMUST00000161304.2	3823	8	4417	0	4417	0	3prime_fragment	FALSE	canonical	3	22	junction_6	2.64575131106459	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTGAGCTTTTTTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	101696242	101679803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_101682208_101684962_101685140_101686637_101686808_101689853_101690014_101692282_101692528_101695501_101695661_101696170
ENSMUSG00000033088.20_1	chr15	+	2525	14	FSM	ENSMUSG00000033088.20	ENSMUST00000109687.9	2570	14	43	2	7	0	multi-exon	FALSE	canonical	3	125	junction_8	26.3687999246734	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCTGGCTCTGTGGATGC	NA	False	NA	7	True	AATAAA	-11	NA	78867283	78890062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78883996_78884145_78885720_78885824_78886247_78886408_78886484_78886599_78887905_78887993_78888644_78888806_78889401
ENSMUSG00000033088.20_2	chr15	+	1665	8	FSM	ENSMUSG00000033088.20	ENSMUST00000130663.10	1660	8	-3	-2	-3	2	multi-exon	FALSE	canonical	3	19	junction_7	63.6226118191786	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATACAGAAATGGATTCTT	NA	False	NA	NA	False	AATAAA	-27	NA	78867273	78879061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78878497
ENSMUSG00000033096.8_0	chr2	-	2207	9	FSM	ENSMUSG00000033096.8	ENSMUST00000046399.7	2235	9	25	3	2	-3	multi-exon	FALSE	canonical	3	74	junction_7	10.0054672554559	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTTCTGCTGATTATT	1024	False	NA	NA	False	AATAAA	-12	NA	150450462	150425002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_150426109_150427682_150427876_150428300_150428436_150428911_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150442163_150442281_150450307
ENSMUSG00000033096.8_10	chr2	-	2017	8	NIC	ENSMUSG00000033096.8	novel	2235	9	NA	NA	-5	-7	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	30.7604304526555	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCACTTTTCTGCTGAT	1017	False	NA	NA	False	AATAAA	-8	NA	150450469	150425006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_150426109_150428300_150428436_150428911_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150442163_150442281_150450307
ENSMUSG00000033096.8_2	chr2	-	2276	10	NIC	ENSMUSG00000033096.8	novel	2235	9	NA	NA	25	-1	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	33.5227948980657	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTCTGCTGATTATTAC	1047	False	NA	NA	False	AATAAA	-14	NA	150450439	150425000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_150426109_150427682_150427876_150428300_150428436_150428911_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150441647_150441738_150442163_150442281_150450307
ENSMUSG00000033099.11_0	chr15	+	922	6	FSM	ENSMUSG00000033099.11	ENSMUST00000138880.9	3721	6	25	2774	25	0	multi-exon	FALSE	canonical	3	420	junction_1	39.9929993873928	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	10	True	NA	NA	NA	78819157	78825064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78819276_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
ENSMUSG00000033099.11_4	chr15	+	1302	6	NIC	ENSMUSG00000033099.11	novel	681	4	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	182.547528057764	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	10	True	NA	NA	NA	78819396	78825064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_78819895_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
ENSMUSG00000033099.11_5	chr15	+	1380	7	NIC	ENSMUSG00000033099.11	novel	681	4	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	219.064424821152	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCAGTCTGTGCTTGTGC	NA	False	NA	9	True	NA	NA	NA	78819408	78825063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_78819895_78820008_78820100_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
ENSMUSG00000033102.16_0	chr13	-	2779	1	ISM	ENSMUSG00000033102.16	ENSMUST00000039318.16	5859	14	79663	2	2599	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGGTTTGTTGTATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	64343139	64340360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_64340400_64343100
ENSMUSG00000033102.16_12	chr13	-	5574	14	FSM	ENSMUSG00000033102.16	ENSMUST00000109769.10	2886	14	121	-2809	121	-4	multi-exon	FALSE	canonical	3	22	junction_2	22.3145877936915	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTTGGTTTGTTGTAT	NA	False	NA	NA	False	ATTAAA	-11	NA	64396335	64340362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_64344490_64353084_64353232_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
ENSMUSG00000033102.16_13	chr13	-	5810	14	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	2	-17	combination_of_known_junctions	FALSE	canonical	3	31	junction_13	15.7570309280854	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATATTAAACAGTCTTT	9678	False	NA	NA	False	ACTAAA	-35	NA	64422800	64340375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_64344490_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64422404
ENSMUSG00000033102.16_14	chr13	-	3047	14	FSM	ENSMUSG00000033102.16	ENSMUST00000039318.16	5859	14	-1	2813	-1	0	multi-exon	FALSE	canonical	3	22	junction_2	21.3895954356179	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9675	False	NA	NA	False	NA	NA	NA	64422803	64343171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_64344490_64353084_64353232_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64422404
ENSMUSG00000033102.16_17	chr13	-	5524	14	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	143	-2	combination_of_known_junctions	FALSE	canonical	3	23	junction_13	17.1357268913424	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGGTTTGTTGTATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	64396313	64340360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_64344490_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
ENSMUSG00000033102.16_20	chr13	-	5575	15	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	143	-17	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	22.1833730712064	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATATTAAACAGTCTTT	NA	False	NA	NA	False	ACTAAA	-35	NA	64396313	64340375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_64344490_64344793_64344860_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
ENSMUSG00000033102.16_24	chr13	-	5914	15	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	-27	-8	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	21.3508112927154	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGTCTTTTGGTTTGTT	9649	False	NA	NA	False	ATTAAA	-7	NA	64422829	64340366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_64344490_64344793_64344860_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64422404
ENSMUSG00000033105.13_0	chr10	+	3095	22	FSM	ENSMUSG00000033105.13	ENSMUST00000048678.7	4667	22	11	1561	6	685	multi-exon	FALSE	canonical	3	170	junction_9	27.7651309078683	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATATTAAAAACAACCAC	NA	False	NA	-10	True	NA	NA	NA	76367451	76389752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76381895_76382046_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
ENSMUSG00000033105.13_3	chr10	+	2940	21	NIC	ENSMUSG00000033105.13	novel	4667	22	NA	NA	6	680	combination_of_known_splicesites	FALSE	canonical	2	7	junction_14	51.7483091511211	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAATATTAAAAACA	NA	False	NA	-15	True	NA	NA	NA	76367451	76389747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
ENSMUSG00000033105.13_46	chr10	+	2847	1	ISM	ENSMUSG00000033105.13	ENSMUST00000160671.8	6992	22	22680	0	2021	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAAGTCTTCCTTTTGCA	1283	False	NA	10	True	AATAAA	-17	NA	76390125	76392972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_76390100_76393000
ENSMUSG00000033106.7_0	chr8	-	1515	5	FSM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	2	-271	2	271	multi-exon	FALSE	canonical	3	127	junction_1	2.91547594742265	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAAGCAAGCAGTTCT	NA	False	NA	-10	True	AATAAA	-14	NA	106937563	106927077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996_106937264_106937350
ENSMUSG00000033106.7_1	chr8	-	1598	4	NNC	ENSMUSG00000033106.7	novel	1246	5	NA	NA	6	271	intron_retention	FALSE	canonical	3	16	junction_2	53.0471488394994	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAAGCAAGCAGTTCT	NA	False	NA	-10	True	AATAAA	-14	NA	106937551	106927077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_106927782_106928862_106928992_106930962_106931173_106936996
ENSMUSG00000033106.7_2	chr8	-	1339	2	ISM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	8068	-271	8060	271	3prime_fragment	FALSE	canonical	3	127	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAAGCAAGCAGTTCT	6092	False	NA	-10	True	AATAAA	-14	NA	106929497	106927077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106927782_106928862
ENSMUSG00000033106.7_4	chr8	-	1534	4	ISM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	70	-271	62	271	intron_retention	FALSE	canonical	3	127	junction_1	3.29983164553722	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAAGCAAGCAGTTCT	NA	False	NA	-10	True	AATAAA	-14	NA	106937495	106927077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996
ENSMUSG00000033106.7_5	chr8	-	1522	5	NNC	ENSMUSG00000033106.7	novel	1246	5	NA	NA	2	270	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	49.2512690191837	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACAGAAGCAAGCAGTTC	NA	False	NA	-11	True	AATAAA	-13	NA	106937563	106927078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_106927782_106928862_106928992_106930962_106931173_106936996_106937264_106937350
ENSMUSG00000033106.7_7	chr8	-	3483	3	NIC	ENSMUSG00000033106.7	novel	1246	5	NA	NA	92	271	intron_retention	FALSE	canonical	3	127	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAAGCAAGCAGTTCT	NA	False	NA	-10	True	AATAAA	-14	NA	106937465	106927077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_106927782_106928862_106931173_106936996
ENSMUSG00000033107.7_0	chr18	+	4844	6	FSM	ENSMUSG00000033107.7	ENSMUST00000050004.3	1348	6	-10	-3486	-10	3486	multi-exon	FALSE	canonical	3	69	junction_1	22.5335305711289	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAAATGTTCACTGTGTC	5331	False	NA	NA	False	AATAAA	-23	NA	21077671	21120405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUSG00000033107.7_2	chr18	+	4939	6	FSM	ENSMUSG00000033107.7	ENSMUST00000234316.2	1406	6	91	-3624	91	3486	multi-exon	FALSE	canonical	3	78	junction_1	19.3349424617711	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAAATGTTCACTGTGTC	1310	False	NA	NA	False	AATAAA	-23	NA	21094619	21120405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_21094858_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUSG00000033111.17_0	chr14	-	2452	6	FSM	ENSMUSG00000033111.17	ENSMUST00000112669.10	2477	6	25	0	-1	0	multi-exon	FALSE	canonical	3	8	junction_2	65.4785461048121	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAAGGTGTTTAAAGG	NA	False	NA	NA	False	AATAAA	-19	NA	10185529	10166531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_10168616_10169980_10170042_10172106_10172182_10182369_10182494_10184294_10184379_10185505
ENSMUSG00000033111.17_1	chr14	-	1147	5	FSM	ENSMUSG00000033111.17	ENSMUST00000163392.3	2452	5	60	1245	1	1	multi-exon	FALSE	canonical	3	65	junction_4	38.2295697072306	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGAGTCTCCAGTTCC	NA	False	NA	-1	True	AATAAA	-25	NA	10185530	10167776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185505
ENSMUSG00000033111.17_10	chr14	-	1700	5	FSM	ENSMUSG00000033111.17	ENSMUST00000224389.2	2444	5	50	694	3	-300	multi-exon	FALSE	canonical	3	13	junction_4	59.4011784394889	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACAATTTCATCTATAGT	NA	False	NA	NA	False	AATAAA	-21	NA	10185459	10167225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185429
ENSMUSG00000033111.17_12	chr14	-	628	1	FSM	ENSMUSG00000033111.17	ENSMUST00000225052.2	2469	1	981	860	981	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCACGGCCCTCTTGAGTC	8246	False	NA	-10	True	AATAAA	-16	NA	10168413	10167785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_10167800_10168400
ENSMUSG00000033111.17_17	chr14	-	916	7	NIC	ENSMUSG00000033111.17	novel	809	6	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	61.1375952712859	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCCTCTTGAGTCTCCAG	NA	False	NA	-5	True	AATAAA	-21	NA	10185538	10167780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185505
ENSMUSG00000033111.17_2	chr14	-	2372	5	NIC	ENSMUSG00000033111.17	novel	2452	5	NA	NA	140	6	intron_retention	FALSE	canonical	1	6	junction_4	62.3232500757141	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAAGCTTTGTGTTTTC	NA	False	NA	-2	True	AATACA	-25	NA	10185322	10166633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185215
ENSMUSG00000033111.17_3	chr14	-	2343	5	FSM	ENSMUSG00000033111.17	ENSMUST00000225294.2	1191	5	-2	-1150	-2	6	multi-exon	FALSE	canonical	3	25	junction_4	54.4196655631032	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAAGCTTTGTGTTTTC	NA	False	NA	-2	True	AATACA	-25	NA	10185507	10166633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
ENSMUSG00000033111.17_4	chr14	-	2193	5	FSM	ENSMUSG00000033111.17	ENSMUST00000223762.2	2292	5	11	88	1	-88	multi-exon	FALSE	canonical	3	15	junction_4	58.5683361552981	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAATATTTGAGTGCACAC	NA	False	NA	-96	True	ATTAAA	-24	NA	10185530	10166727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185505
ENSMUSG00000033114.12_1	chr13	-	1444	12	FSM	ENSMUSG00000033114.12	ENSMUST00000099441.6	2303	12	26	833	1	0	multi-exon	FALSE	canonical	3	80	junction_8	14.1169846708972	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGTGTGATATTACAGT	NA	False	NA	NA	False	AATAAA	-19	NA	64277143	64244954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
ENSMUSG00000033114.12_13	chr13	-	1376	11	NIC	ENSMUSG00000033114.12	novel	2303	12	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	31.255239560752	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCACAGTGTGATATTACAG	NA	False	NA	NA	False	AATAAA	-18	NA	64277144	64244955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64268408_64268496_64270132_64270167_64276999
ENSMUSG00000033114.12_14	chr13	-	1400	11	FSM	ENSMUSG00000033114.12	ENSMUST00000222794.2	983	11	1	-418	1	-5	multi-exon	FALSE	canonical	2	7	junction_10	34.3745545425683	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCGCACAGTGTGATATT	NA	False	NA	NA	False	AATAAA	-14	NA	64277138	64244959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64276999
ENSMUSG00000033114.12_3	chr13	-	2189	11	FSM	ENSMUSG00000033114.12	ENSMUST00000220792.2	917	11	-18	-1254	1	-5	multi-exon	FALSE	canonical	3	12	junction_1	32.1846236578898	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGACTTGGTTATGGTTTT	NA	False	NA	-6	True	NA	NA	NA	64277143	64244126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_64245499_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
ENSMUSG00000033114.12_5	chr13	-	2074	9	NIC	ENSMUSG00000033114.12	novel	983	11	NA	NA	1	-9	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	35.5773804544404	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATTGACTTGGTTATGG	NA	False	NA	-10	True	NA	NA	NA	64277138	64244130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64276999
ENSMUSG00000033114.12_6	chr13	-	2107	10	NIC	ENSMUSG00000033114.12	novel	2303	12	NA	NA	-6	-3	combination_of_known_splicesites	FALSE	canonical	1	3	junction_8	36.5817197821839	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGTTATGGTTTTTG	NA	False	NA	-4	True	NA	NA	NA	64277131	64244124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64270132_64270167_64276999
ENSMUSG00000033124.17_1	chr1	-	3804	16	FSM	ENSMUSG00000033124.17	ENSMUST00000188347.7	4041	16	236	1	2	0	multi-exon	FALSE	canonical	3	15	junction_15	10.8226100774669	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTGTGGCATCTTTT	NA	False	NA	-2	True	AATAAA	-13	NA	75168604	75157509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167525_75168467
ENSMUSG00000033124.17_11	chr1	-	2623	9	ISM	ENSMUSG00000033124.17	ENSMUST00000040689.15	3764	16	5426	0	-450	0	3prime_fragment	FALSE	canonical	3	42	junction_6	5.69539287494726	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTGTGGCATCTTTT	NA	False	NA	-2	True	AATAAA	-13	NA	75163141	75157509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833
ENSMUSG00000033124.17_2	chr1	-	3898	16	FSM	ENSMUSG00000033124.17	ENSMUST00000189702.7	4110	16	204	8	3	-2	multi-exon	FALSE	canonical	3	11	junction_15	11.6714276000077	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTGGTTGTGGCATCTT	NA	False	NA	-4	True	AATAAA	-11	NA	75168366	75157511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167522_75168130
ENSMUSG00000033124.17_3	chr1	-	3802	16	FSM	ENSMUSG00000033124.17	ENSMUST00000040689.15	3764	16	-38	0	1	0	multi-exon	FALSE	canonical	3	19	junction_15	10.0013332444563	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTGTGGCATCTTTT	NA	False	NA	-2	True	AATAAA	-13	NA	75168605	75157509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167522_75168467
ENSMUSG00000033124.17_4	chr1	-	870	1	ISM	ENSMUSG00000099519.2	ENSMUST00000185727.2	5231	22	3411	9135	3411	-9135	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTGTGGCATCTTTT	NA	False	NA	-2	True	AATAAA	-13	NA	75158379	75157509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_75157500_75158400
ENSMUSG00000033124.17_6	chr1	-	3893	16	NIC	ENSMUSG00000033124.17	novel	4110	16	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_15	12.1043610139303	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTGTGGCATCTTTT	NA	False	NA	-2	True	AATAAA	-13	NA	75168356	75157509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167525_75168130
ENSMUSG00000033126.6_0	chr10	-	3812	5	FSM	ENSMUSG00000033126.6	ENSMUST00000049185.6	4522	5	288	422	37	-422	multi-exon	FALSE	canonical	3	28	junction_2	3.63145976158349	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAATAGCCCAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	76304660	76295822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_76299154_76300090_76300160_76302070_76302200_76303990_76304221_76304607
ENSMUSG00000033126.6_2	chr10	-	3578	4	NIC	ENSMUSG00000033126.6	novel	4522	5	NA	NA	37	-426	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	13.7679176187089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCATGTAATAGCCCAAAG	NA	False	NA	NA	False	NA	NA	NA	76304660	76295826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_76299154_76300090_76300160_76302070_76302200_76304607
ENSMUSG00000033126.6_3	chr10	-	338	2	ISM	ENSMUSG00000033126.6	ENSMUST00000049185.6	4522	5	277	8546	26	-748	5prime_fragment	FALSE	canonical	3	38	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATGTTCTTCTCGTACA	NA	False	NA	NA	False	NA	NA	NA	76304671	76303946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_76304221_76304607
ENSMUSG00000033126.6_8	chr10	-	3090	1	ISM	ENSMUSG00000033126.6	ENSMUST00000049185.6	4522	5	6453	5	6202	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGACAGTCTCTCGTGA	NA	False	NA	NA	False	NA	NA	NA	76298495	76295405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_76295400_76298500
ENSMUSG00000033128.10_2	chr15	+	2673	17	FSM	ENSMUSG00000033128.10	ENSMUST00000041587.8	3034	17	359	2	-2	-2	multi-exon	TRUE	canonical	3	379	junction_6	54.6157028701453	815	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTAGCTGCTCTTGTCACC	NA	False	NA	16	True	AATAAA	-16	NA	78761748	78778783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78773202_78773311_78773915_78774069_78775636_78775702_78776113_78776287_78776652_78776841_78777366_78777537_78777738_78777850_78777933
ENSMUSG00000033149.18_1	chr16	-	5438	18	FSM	ENSMUSG00000033149.18	ENSMUST00000036355.13	5483	18	42	3	7	-3	multi-exon	FALSE	canonical	3	48	junction_15	7.72315083521806	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCACAGTGGAAACACT	NA	False	NA	-13	True	ATTAAA	-10	NA	45664699	45566608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45595306_45595451_45598075_45598166_45600618_45600730_45601664_45601821_45609351_45609481_45621854_45621993_45623058_45623203_45628488_45628873_45645121_45646459_45664570
ENSMUSG00000033149.18_19	chr16	-	3761	16	ISM	ENSMUSG00000033149.18	ENSMUST00000036355.13	5483	18	47	5003	12	-4086	5prime_fragment	FALSE	canonical	3	48	junction_13	8.2138095100061	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATCTGAACCTAGAAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	45664694	45571608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45595306_45595451_45598075_45598166_45600618_45600730_45601664_45601821_45609351_45609481_45621854_45621993_45623058_45623203_45628488_45628873_45645121_45646459_45664570
ENSMUSG00000033149.18_2	chr16	-	3278	8	ISM	ENSMUSG00000033149.18	ENSMUST00000131003.8	2328	13	28696	-916	-592	-1	3prime_fragment	TRUE	canonical	3	60	junction_2	7.26467550576635	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACAGTGGAAACACTTT	NA	False	NA	-11	True	ATTAAA	-12	NA	45593238	45566606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497
ENSMUSG00000033149.18_23	chr16	-	2468	2	ISM	ENSMUSG00000033149.18	ENSMUST00000076333.12	5347	19	-114	77375	-5	2036	5prime_fragment	FALSE	canonical	3	73	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTCTCAATCGTGGAA	NA	False	NA	NA	False	NA	NA	NA	45664711	45644131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_45646459_45664570
ENSMUSG00000033149.18_6	chr16	-	5391	18	NNC	ENSMUSG00000033149.18	novel	5483	18	NA	NA	-13	-1	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_9	15.495283354246	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACAGTGGAAACACTTT	NA	False	NA	-11	True	ATTAAA	-12	NA	45664719	45566606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45595306_45595382_45598075_45598166_45600618_45600730_45601664_45601821_45609351_45609481_45621854_45621993_45623058_45623203_45628488_45628873_45645121_45646459_45664570
ENSMUSG00000033149.18_8	chr16	-	4762	17	ISM	ENSMUSG00000033149.18	ENSMUST00000036355.13	5483	18	18832	1	18688	-1	3prime_fragment	FALSE	canonical	3	48	junction_15	7.3357003755606	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACAGTGGAAACACTTT	8180	False	NA	-11	True	ATTAAA	-12	NA	45645909	45566606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45595306_45595451_45598075_45598166_45600618_45600730_45601664_45601821_45609351_45609481_45621854_45621993_45623058_45623203_45628488_45628873_45645121
ENSMUSG00000033152.14_3	chr6	-	2037	8	FSM	ENSMUSG00000033152.14	ENSMUST00000145944.3	2065	8	48	-20	-7	-1	multi-exon	FALSE	canonical	2	3	junction_6	2.71804251292006	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCACGCCTGTTTTTTGC	NA	False	NA	NA	False	ATTAAA	-27	NA	88851978	88819540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_88819959_88820488_88820669_88822047_88822110_88822514_88822672_88825716_88825792_88826176_88826971_88841998_88842272_88851900
ENSMUSG00000033157.18_0	chr16	-	2611	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-1	-6	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACTGTATGGTGAGTC	NA	False	NA	-11	True	NA	NA	NA	45563271	45550093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
ENSMUSG00000033157.18_12	chr16	-	1286	6	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-10	260	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	144.088028649156	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTCTGGTACCATTAT	NA	False	NA	-5	True	AATAAA	-16	NA	45563280	45551653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_45552323_45553100_45553143_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ENSMUSG00000033157.18_2	chr16	-	1343	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	44	1461	-4	365	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATGTCTGAAGCATAA	NA	False	NA	NA	False	AGTAAA	-14	NA	45563274	45551548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ENSMUSG00000033157.18_5	chr16	-	3276	1	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	9879	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACTGTATGGTGAGTC	NA	False	NA	-11	True	NA	NA	NA	45553369	45550093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_45550100_45553400
ENSMUSG00000033159.15_0	chr1	-	2485	9	FSM	ENSMUSG00000033159.15	ENSMUST00000168720.8	3669	9	-33	1217	26	0	multi-exon	TRUE	canonical	3	100	junction_8	23.1405353222435	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTGGCCTTTTCCTTC	9334	False	NA	-16	True	AATAAA	-14	NA	75119315	75112414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118701
ENSMUSG00000033159.15_1	chr1	-	2404	10	FSM	ENSMUSG00000033159.15	ENSMUST00000041213.12	2429	10	25	0	25	0	multi-exon	FALSE	canonical	3	17	junction_9	47.8820567438857	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTGGCCTTTTCCTTC	9333	False	NA	-16	True	AATAAA	-14	NA	75119316	75112414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118701_75119205_75119286
ENSMUSG00000033159.15_4	chr1	-	1952	8	FSM	ENSMUSG00000033159.15	ENSMUST00000190679.7	2062	8	107	3	107	0	multi-exon	FALSE	canonical	3	148	junction_4	12.6426553656215	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTGGCCTTTTCCTTC	7013	False	NA	-16	True	AATAAA	-14	NA	75118228	75112414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059
ENSMUSG00000033159.15_5	chr1	-	1909	9	NIC	ENSMUSG00000033159.15	novel	2429	10	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	50.7222830716442	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTGGCCTTTTCCTTC	9325	False	NA	-16	True	AATAAA	-14	NA	75119324	75112414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75119286
ENSMUSG00000033161.11_0	chr3	-	3646	23	FSM	ENSMUSG00000033161.11	ENSMUST00000036493.8	3679	23	22	11	22	-11	multi-exon	FALSE	canonical	3	297	junction_17	44.2662166204014	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGGAATTTGCTTTTGAGT	NA	False	NA	-17	True	AATAAA	-13	NA	101511978	101483545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_101483901_101484234_101484327_101486309_101486412_101486836_101486968_101487089_101487236_101488462_101488587_101489040_101489196_101489317_101489487_101490003_101490155_101491060_101491198_101492038_101492215_101493442_101493636_101494131_101494267_101496321_101496432_101497082_101497282_101497762_101498032_101498436_101498555_101498655_101498791_101499096_101499211_101499693_101499898_101501518_101501579_101502313_101502425_101511718
ENSMUSG00000033161.11_1	chr3	-	120	1	ISM	ENSMUSG00000033161.11	ENSMUST00000036493.8	3679	23	28340	6	1216	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	424	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGCTTTTGAGTCCTTG	NA	False	NA	-12	True	AATAAA	-18	NA	101483660	101483540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_101483500_101483700
ENSMUSG00000033166.12_0	chr14	-	3053	21	FSM	ENSMUSG00000033166.12	ENSMUST00000042471.11	5150	21	23	2074	-7	-10	multi-exon	FALSE	canonical	3	393	junction_13	28.371596712205	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAATTTGCATTTTTATT	2550	False	NA	-21	True	AATACA	-14	NA	99337183	99314715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_99314902_99315697_99315821_99316563_99316723_99316823_99316993_99317100_99317316_99318661_99318819_99320085_99320173_99321462_99321591_99323309_99323395_99323482_99323548_99324824_99324927_99325169_99325287_99326197_99326345_99327053_99327192_99327400_99327515_99328763_99328929_99332608_99332777_99334192_99334267_99335020_99335215_99336118_99336277_99336881
ENSMUSG00000033166.12_6	chr14	-	3121	22	NIC	ENSMUSG00000033166.12	novel	5150	21	NA	NA	-7	-10	combination_of_known_junctions	FALSE	canonical	3	37	junction_20	122.265648850725	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAATTTGCATTTTTATT	2550	False	NA	-21	True	AATACA	-14	NA	99337183	99314715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_99314902_99315697_99315821_99316563_99316723_99316823_99316993_99317100_99317316_99318661_99318819_99320085_99320173_99321462_99321591_99323309_99323395_99323482_99323548_99324824_99324927_99325169_99325287_99326197_99326345_99327053_99327192_99327400_99327515_99328763_99328929_99332608_99332777_99334192_99334267_99335020_99335215_99336118_99336277_99336554_99336623_99336881
ENSMUSG00000033174.18_0	chr6	+	3647	8	FSM	ENSMUSG00000033174.18	ENSMUST00000113585.9	3676	8	26	3	26	-3	multi-exon	FALSE	canonical	2	10	junction_6	2.55550625999976	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGCCTGTGTCTGCGTGT	NA	False	NA	2	True	AATAAA	-17	NA	88701419	88805339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_88701554_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
ENSMUSG00000033174.18_2	chr6	+	3980	8	FSM	ENSMUSG00000033174.18	ENSMUST00000163271.8	3991	8	8	3	8	-3	multi-exon	FALSE	canonical	2	4	junction_1	4.18939379960434	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGCCTGTGTCTGCGTGT	NA	False	NA	2	True	AATAAA	-17	NA	88701693	88805339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_88702161_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
ENSMUSG00000033174.18_8	chr6	+	1763	1	ISM	ENSMUSG00000033174.18	ENSMUST00000113585.9	3676	8	102183	3	3465	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGCCTGTGTCTGCGTGT	847	False	NA	2	True	AATAAA	-17	NA	88803576	88805339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_88803600_88805300
ENSMUSG00000033184.15_0	chr18	-	3397	3	FSM	ENSMUSG00000033184.15	ENSMUST00000151189.2	1348	3	20	-2069	1	-24	multi-exon	FALSE	canonical	3	571	junction_1	23	1310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAAGAAAAAAATT	NA	False	NA	-36	True	ATTAAA	-37	NA	46730582	46719029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_46721756_46726315_46726562_46730157
ENSMUSG00000033184.15_1	chr18	-	2149	1	ISM	ENSMUSG00000033184.15	ENSMUST00000143178.2	7982	2	9405	24	9203	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAAGAAAAAAATT	7177	False	NA	-36	True	ATTAAA	-37	NA	46721178	46719029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_46719000_46721200
ENSMUSG00000033186.10_0	chr14	-	2225	3	FSM	ENSMUSG00000033186.10	ENSMUST00000042662.10	2240	3	11	4	11	-4	multi-exon	FALSE	canonical	3	792	junction_1	24.5	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGCCTTGTCCTTTTGAT	NA	False	NA	NA	False	AATAAA	-14	NA	99283545	99271983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_99273947_99277950_99278097_99283429
ENSMUSG00000033186.10_1	chr14	-	1641	1	ISM	ENSMUSG00000033186.10	ENSMUST00000042662.10	2240	3	9932	4	9764	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGCCTTGTCCTTTTGAT	NA	False	NA	NA	False	AATAAA	-14	NA	99273624	99271983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_99272000_99273600
ENSMUSG00000033186.10_15	chr14	-	2445	4	NNC	ENSMUSG00000033186.10	novel	2240	3	NA	NA	-2	284	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.421270242777	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGACAATTCAGATAAATA	NA	False	NA	NA	False	GATAAA	-2	NA	99283531	99271695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_99271753_99271806_99273947_99277950_99278097_99283429
ENSMUSG00000033192.6_0	chr8	+	2035	14	FSM	ENSMUSG00000033192.6	ENSMUST00000046290.3	2811	14	-4	780	-4	-324	multi-exon	TRUE	canonical	2	3	junction_10	2.47591952914324	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTCCACTGGTCAGCAAT	NA	False	NA	NA	False	AATAAA	-17	NA	93581962	93645127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_93582254_93591528_93591669_93596275_93596494_93597765_93597879_93599675_93599737_93600860_93600920_93602182_93602218_93606027_93606083_93613193_93613277_93615900_93616027_93617300_93617455_93635814_93635914_93640870_93641007_93644662
ENSMUSG00000033209.18_1	chr5	+	8048	23	FSM	ENSMUSG00000033209.18	ENSMUST00000156290.9	10688	23	9	2631	9	-2630	multi-exon	TRUE	canonical	1	3	junction_2	5.32128891364483	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTCTTGTCCAGGCATTT	NA	False	NA	NA	False	NA	NA	NA	111027677	111435015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_111027855_111040697_111040977_111232887_111233036_111248559_111248833_111249835_111249967_111330789_111331298_111370975_111372318_111373423_111373948_111377213_111377324_111378915_111379046_111381111_111381331_111383341_111383508_111414400_111414542_111419060_111419206_111424027_111424208_111424649_111425371_111426341_111426467_111427824_111428057_111428540_111428618_111429745_111429770_111430636_111430767_111431810_111431919_111432857
ENSMUSG00000033209.18_3	chr5	+	2048	3	FSM	ENSMUSG00000033209.18	ENSMUST00000143505.2	1557	3	-15	-476	4	476	multi-exon	FALSE	canonical	3	14	junction_2	7	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAATATTTCCTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	111027672	111062658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_111027855_111040697_111040977_111061071
ENSMUSG00000033209.18_8	chr5	+	1669	1	ISM	ENSMUSG00000033209.18	ENSMUST00000040111.10	10780	24	408300	8	52788	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTTAAATGCTGTCTCCG	6726	False	NA	5	True	ATTAAA	-14	NA	111435968	111437637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_111436000_111437600
ENSMUSG00000033213.17_0	chr2	+	611	5	FSM	ENSMUSG00000033213.17	ENSMUST00000047498.15	792	5	65	116	0	-10	multi-exon	FALSE	canonical	3	117	junction_4	21.9146070008111	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGTAAAACATGATTTGT	NA	False	NA	13	True	AATAAA	-15	NA	122479834	122482995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_122479862_122479991_122480054_122480176_122480263_122481135_122481197_122482620
ENSMUSG00000033213.17_1	chr2	+	592	4	NIC	ENSMUSG00000033213.17	novel	792	5	NA	NA	4	-4	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	57.249939349798	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATGATTTGTGCAAGA	NA	False	NA	19	True	AATAAA	-21	NA	122479773	122483001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_122479862_122479991_122480054_122481135_122481197_122482620
ENSMUSG00000033213.17_6	chr2	+	587	4	FSM	ENSMUSG00000033213.17	ENSMUST00000110512.4	751	4	153	11	153	-11	multi-exon	FALSE	canonical	3	117	junction_3	25.0377492776186	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTGTAAAACATGATTTG	NA	False	NA	12	True	AATAAA	-14	NA	122479987	122482994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_122480054_122480176_122480263_122481135_122481197_122482620
ENSMUSG00000033216.10_0	chr6	-	2115	7	FSM	ENSMUSG00000033216.10	ENSMUST00000165242.4	2679	7	27	537	2	2	multi-exon	TRUE	canonical	3	371	junction_3	47.1643108952333	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAGTGTGCCCATAGTCT	NA	False	NA	-15	True	AATAAA	-14	NA	88423494	88234852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_88235374_88258530_88258688_88274558_88275219_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ENSMUSG00000033216.10_5	chr6	-	1456	6	NIC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	1	2	combination_of_known_junctions	FALSE	canonical	3	78	junction_2	158.228189650264	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAGTGTGCCCATAGTCT	NA	False	NA	-15	True	AATAAA	-14	NA	88423495	88234852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_88235374_88258530_88258688_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ENSMUSG00000033220.8_0	chr15	-	1732	6	NIC	ENSMUSG00000033220.8	novel	3038	7	NA	NA	15	1019	intron_retention	FALSE	canonical	3	13	junction_2	6.04648658313239	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATAAATGTGTTGATT	NA	False	NA	NA	False	NA	NA	NA	78456966	78445075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_78446239_78449062_78449223_78449640_78449704_78450113_78450232_78454931_78455004_78456810
ENSMUSG00000033220.8_1	chr15	-	1309	7	FSM	ENSMUSG00000033220.8	ENSMUST00000043214.8	3038	7	22	1707	20	1021	multi-exon	FALSE	canonical	3	13	junction_3	5.64702478203247	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAATGTGTTGATTCT	NA	False	NA	NA	False	NA	NA	NA	78456961	78445073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_78445686_78446105_78446239_78449062_78449223_78449640_78449704_78450113_78450232_78454931_78455004_78456810
ENSMUSG00000033222.17_0	chr3	-	4540	23	FSM	ENSMUSG00000033222.17	ENSMUST00000076941.12	4541	23	0	1	0	-1	multi-exon	FALSE	canonical	3	226	junction_14	22.0712594988997	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGTGATGCTGTGTGT	NA	False	NA	-8	True	AATAAA	-16	NA	100876979	100846176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
ENSMUSG00000033222.17_7	chr3	-	3773	19	ISM	ENSMUSG00000033222.17	ENSMUST00000076941.12	4541	23	6659	1	-3009	-1	3prime_fragment	TRUE	canonical	3	226	junction_14	23.9385143468805	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGTGATGCTGTGTGT	NA	False	NA	-8	True	AATAAA	-16	NA	100870320	100846176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868
ENSMUSG00000033227.8_1	chr1	+	1134	3	ISM	ENSMUSG00000033227.8	ENSMUST00000006716.8	2071	4	10372	444	-175	276	3prime_fragment	FALSE	canonical	1	2	junction_2	2	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATATTCCTCAGAATT	4352	False	NA	NA	False	AATAAA	-23	NA	74821422	74824037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74821482_74821718_74822054_74823297
ENSMUSG00000033228.9_2	chr15	-	3132	5	FSM	ENSMUSG00000033228.9	ENSMUST00000228072.2	4519	5	-578	1965	-578	-8	multi-exon	FALSE	canonical	0	0	junction_2	104.145331148352	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAGTGAATAAAGTGTTA	NA	False	NA	-28	True	NA	NA	NA	96317151	96311544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952
ENSMUSG00000033228.9_4	chr15	-	4830	15	FSM	ENSMUSG00000033228.9	ENSMUST00000047835.8	5766	15	12	924	-7	-8	multi-exon	TRUE	canonical	3	72	junction_2	59.5770809240313	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAAGGGTGTAATGGG	NA	False	NA	-11	True	AATAAA	-14	NA	96358712	96312460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_96312798_96312912_96313033_96313657_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
ENSMUSG00000033228.9_46	chr15	-	200	1	ISM	ENSMUSG00000033228.9	ENSMUST00000227133.2	2599	2	10576	285	-3652	-285	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	96348105	96347905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_96347900_96348100
ENSMUSG00000033228.9_5	chr15	-	4878	15	NIC	ENSMUSG00000033228.9	novel	5766	15	NA	NA	-7	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	76.3346552480375	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAAGGGTGTAATGGG	NA	False	NA	-11	True	AATAAA	-14	NA	96358712	96312460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
ENSMUSG00000033228.9_6	chr15	-	2360	1	ISM	ENSMUSG00000033228.9	ENSMUST00000228072.2	4519	5	4630	4	4630	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTACTGGTGACTGTAT	NA	False	NA	-6	True	NA	NA	NA	96311943	96309583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_96309600_96311900
ENSMUSG00000033228.9_7	chr15	-	2914	5	ISM	ENSMUSG00000033228.9	ENSMUST00000047835.8	5766	15	41745	6	-406	-6	3prime_fragment	FALSE	canonical	3	72	junction_2	73.1864058415222	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGTGAATAAAGTGTTAAT	NA	False	NA	-26	True	NA	NA	NA	96316979	96311542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_96312798_96312912_96313033_96313657_96313829_96314729_96315071_96315952
ENSMUSG00000033233.18_0	chr3	+	2318	6	FSM	ENSMUSG00000033233.18	ENSMUST00000037409.13	4612	6	-16	2310	-16	-1	multi-exon	FALSE	canonical	2	8	junction_3	2.33238075793812	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATCAGACTTCAAGTGC	4315	False	NA	6	True	ATTAAA	-17	NA	100829774	100839017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_100830716_100832256_100832991_100834540_100834671_100835370_100835486_100837132_100837260_100838746
ENSMUSG00000033233.18_1	chr3	+	1547	2	ISM	ENSMUSG00000033233.18	ENSMUST00000094048.10	1815	7	247	6166	-26	-6166	internal_fragment	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGCCCGCCCAGGAGTG	4305	False	NA	NA	False	AATAAA	-8	NA	100829764	100832852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_100830716_100832256
ENSMUSG00000033237.20_15	chr15	+	6944	20	ISM	ENSMUSG00000033237.20	ENSMUST00000096250.5	8507	21	278	1392	278	-1	3prime_fragment	FALSE	canonical	3	74	junction_12	17.2666877007469	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGAGTCCTTTATTTCT	NA	False	NA	12	True	AATAAA	-13	NA	96185731	96301481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_96185869_96186935_96187034_96247873_96248008_96254573_96254793_96256800_96256869_96259454_96259522_96259613_96259865_96260197_96260295_96260372_96260583_96261475_96261644_96264713_96264796_96266533_96266669_96267236_96267434_96267800_96270644_96276694_96276844_96288756_96288896_96288984_96289071_96290235_96290360_96290453_96290546_96299833
ENSMUSG00000033237.20_16	chr15	+	6787	19	ISM	ENSMUSG00000033237.20	ENSMUST00000096250.5	8507	21	1502	1392	1502	-1	3prime_fragment	FALSE	canonical	3	74	junction_11	17.7051467721175	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGAGTCCTTTATTTCT	1202	False	NA	12	True	AATAAA	-13	NA	96186955	96301481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_96187034_96247873_96248008_96254573_96254793_96256800_96256869_96259454_96259522_96259613_96259865_96260197_96260295_96260372_96260583_96261475_96261644_96264713_96264796_96266533_96266669_96267236_96267434_96267800_96270644_96276694_96276844_96288756_96288896_96288984_96289071_96290235_96290360_96290453_96290546_96299833
ENSMUSG00000033237.20_2	chr15	+	7151	21	FSM	ENSMUSG00000033237.20	ENSMUST00000096250.5	8507	21	-36	1392	19	-1	multi-exon	FALSE	canonical	3	74	junction_13	16.8330032970947	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGAGTCCTTTATTTCT	NA	False	NA	12	True	AATAAA	-13	NA	96185417	96301481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_96185668_96185774_96185869_96186935_96187034_96247873_96248008_96254573_96254793_96256800_96256869_96259454_96259522_96259613_96259865_96260197_96260295_96260372_96260583_96261475_96261644_96264713_96264796_96266533_96266669_96267236_96267434_96267800_96270644_96276694_96276844_96288756_96288896_96288984_96289071_96290235_96290360_96290453_96290546_96299833
ENSMUSG00000033237.20_22	chr15	+	3484	7	ISM	ENSMUSG00000033237.20	ENSMUST00000096250.5	8507	21	83941	1395	-7300	-4	3prime_fragment	FALSE	canonical	3	110	junction_6	9.29157324317757	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTTGAGTCCTTTATT	NA	False	NA	9	True	AATAAA	-10	NA	96269394	96301478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_96270644_96276694_96276844_96288756_96288896_96288984_96289071_96290235_96290360_96290453_96290546_96299833
ENSMUSG00000033237.20_27	chr15	+	1421	1	ISM	ENSMUSG00000033237.20	ENSMUST00000096250.5	8507	21	114608	1391	23367	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGAGTCCTTTATTTCTG	NA	False	NA	13	True	AATAAA	-14	NA	96300061	96301482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_96300100_96301500
ENSMUSG00000033237.20_6	chr15	+	5691	15	ISM	ENSMUSG00000033237.20	ENSMUST00000096250.5	8507	21	-407	31823	-352	13386	5prime_fragment	FALSE	canonical	3	74	junction_13	12.5795428358579	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAAACTACATCGGAGAA	NA	False	NA	NA	False	AATAAA	-10	NA	96185046	96271050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_96185668_96185774_96185869_96186935_96187034_96247873_96248008_96254573_96254793_96256800_96256869_96259454_96259522_96259613_96259865_96260197_96260295_96260372_96260583_96261475_96261644_96264713_96264796_96266533_96266669_96267236_96267434_96267800
ENSMUSG00000033253.19_0	chr4	-	6149	11	ISM	ENSMUSG00000033253.19	ENSMUST00000075406.12	10965	72	37365	-4001	1917	4001	3prime_fragment	FALSE	canonical	3	24	junction_4	6.19354502688081	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCGAGATGGTCCTTCGT	2681	False	NA	NA	False	NA	NA	NA	118229105	118215938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016
ENSMUSG00000033253.19_10	chr4	-	3065	17	ISM	ENSMUSG00000033253.19	ENSMUST00000075406.12	10965	72	35793	2	345	-2	3prime_fragment	FALSE	canonical	3	24	junction_4	6.26716393195519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGCTCAGTGTGATTTTAA	1109	False	NA	-7	True	AATATA	-11	NA	118230677	118219941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621
ENSMUSG00000033253.19_13	chr4	-	2603	14	ISM	ENSMUSG00000033253.19	ENSMUST00000075406.12	10965	72	36615	4	1167	0	3prime_fragment	FALSE	canonical	3	24	junction_4	6.00492894193038	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGCTCAGTGTGATTTT	1931	False	NA	-9	True	AATATA	-9	NA	118229855	118219943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713
ENSMUSG00000033253.19_2	chr4	-	1229	4	ISM	ENSMUSG00000033253.19	ENSMUST00000183402.8	3652	21	9117	0	-91	0	3prime_fragment	FALSE	canonical	3	28	junction_3	7.40870359029762	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGCTCAGTGTGATTTT	9432	False	NA	-9	True	AATATA	-9	NA	118222354	118219943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036
ENSMUSG00000033253.19_26	chr4	-	4513	25	NIC	ENSMUSG00000033253.19	novel	10965	72	NA	NA	-2396	0	intron_retention	FALSE	canonical	3	17	junction_24	7.39357359844044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCAGTGTGATTTTAATT	NA	False	NA	-5	True	AATATA	-13	NA	118233867	118219939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621_118231074_118231155_118231254_118231369_118231537_118232187_118232322_118232654_118232823_118232925_118233091_118233239_118233325_118233529_118233695_118233799
ENSMUSG00000033253.19_32	chr4	-	3698	22	ISM	ENSMUSG00000033253.19	ENSMUST00000075406.12	10965	72	33783	9	-1216	-5	3prime_fragment	FALSE	canonical	3	12	junction_17	7.77955923880739	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGAGAACGCTCAGTGTG	NA	False	NA	-14	True	AATATA	-4	NA	118232687	118219948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621_118230753_118230940_118231074_118231155_118231254_118231369_118231537_118232187_118232322_118232654
ENSMUSG00000033253.19_33	chr4	-	10951	72	FSM	ENSMUSG00000033253.19	ENSMUST00000075406.12	10965	72	10	4	10	0	multi-exon	TRUE	canonical	1	1	junction_33	9.15204721689447	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGCTCAGTGTGATTTT	3273	False	NA	-9	True	AATATA	-9	NA	118266460	118219943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621_118230753_118230940_118231074_118231155_118231254_118231369_118231537_118232187_118232322_118232654_118232823_118232925_118233091_118233239_118233325_118233529_118233695_118233799_118233919_118234860_118234973_118235063_118235170_118235262_118235366_118235444_118235598_118237363_118237494_118238550_118238651_118239780_118239983_118240154_118240227_118240343_118240432_118240507_118240676_118241001_118241188_118241377_118241442_118241668_118241777_118241891_118242034_118242210_118242505_118242608_118242688_118242806_118242900_118243051_118243194_118243940_118244188_118244300_118244417_118244647_118244853_118244939_118245105_118245213_118245338_118245504_118245600_118245740_118245912_118246119_118246234_118246330_118246446_118246569_118246739_118246971_118247067_118247254_118247334_118247678_118247895_118247970_118248186_118248372_118248488_118248596_118248750_118248913_118249057_118249752_118249883_118250010_118250246_118250642_118250814_118251016_118251228_118254809_118254917_118255310_118255453_118256227_118256360_118259599_118259771_118260017_118260192_118262622_118262749_118266359
ENSMUSG00000033253.19_35	chr4	-	3649	21	ISM	ENSMUSG00000033253.19	ENSMUST00000075406.12	10965	72	34165	9	-834	-5	3prime_fragment	FALSE	canonical	3	12	junction_17	7.76063786038235	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGAGAACGCTCAGTGTG	NA	False	NA	-14	True	AATATA	-4	NA	118232305	118219948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621_118230753_118230940_118231074_118231155_118231254_118231369_118231537_118232187
ENSMUSG00000033253.19_36	chr4	-	4319	26	ISM	ENSMUSG00000033253.19	ENSMUST00000075406.12	10965	72	32605	4	-2394	0	3prime_fragment	FALSE	canonical	3	12	junction_17	7.9098925403573	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGCTCAGTGTGATTTT	NA	False	NA	-9	True	AATATA	-9	NA	118233865	118219943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621_118230753_118230940_118231074_118231155_118231254_118231369_118231537_118232187_118232322_118232654_118232823_118232925_118233091_118233239_118233325_118233529_118233695_118233799
ENSMUSG00000033253.19_42	chr4	-	3923	23	ISM	ENSMUSG00000033253.19	ENSMUST00000075406.12	10965	72	33464	0	-1535	0	3prime_fragment	FALSE	canonical	3	12	junction_17	7.93569194283462	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCAGTGTGATTTTAATT	NA	False	NA	-5	True	AATATA	-13	NA	118233006	118219939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621_118230753_118230940_118231074_118231155_118231254_118231369_118231537_118232187_118232322_118232654_118232823_118232925
ENSMUSG00000033253.19_48	chr4	-	5240	33	ISM	ENSMUSG00000033253.19	ENSMUST00000075406.12	10965	72	26535	-5	7195	5	3prime_fragment	FALSE	canonical	2	12	junction_17	8.14108983797624	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTGATTTTAATTCAGAG	8994	False	NA	0	True	AATATA	-18	NA	118239935	118219934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621_118230753_118230940_118231074_118231155_118231254_118231369_118231537_118232187_118232322_118232654_118232823_118232925_118233091_118233239_118233325_118233529_118233695_118233799_118233919_118234860_118234973_118235063_118235170_118235262_118235366_118235444_118235598_118237363_118237494_118238550_118238651_118239780
ENSMUSG00000033255.9_1	chr10	+	1840	6	ISM	ENSMUSG00000033255.9	ENSMUST00000099577.4	2838	14	39303	5	19731	-5	3prime_fragment	FALSE	canonical	2	3	junction_3	1.89736659610103	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACTTTCAGGTGTCTTG	NA	False	NA	4	True	AATAAA	-17	NA	75829650	75845420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_75829767_75831613_75831765_75836222_75836392_75840528_75840745_75841823_75841927_75844335
ENSMUSG00000033256.15_0	chr2	-	1775	6	FSM	ENSMUSG00000033256.15	ENSMUST00000110531.9	1557	6	-224	6	-5	-6	multi-exon	FALSE	canonical	3	69	junction_2	30.854497241083	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCACTTTCCGAGCATC	NA	False	NA	-17	True	TATAAA	-32	NA	122199623	122179379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_122180021_122184245_122184366_122184509_122184679_122187563_122187771_122189928_122190071_122199127
ENSMUSG00000033256.15_1	chr2	-	1776	6	FSM	ENSMUSG00000033256.15	ENSMUST00000151130.8	1539	6	-8	-229	-8	-6	multi-exon	FALSE	canonical	3	35	junction_2	39.8216021777125	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCACTTTCCGAGCATC	NA	False	NA	-17	True	TATAAA	-32	NA	122199626	122179379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_122180021_122184245_122184366_122184511_122184679_122187563_122187771_122189928_122190071_122199127
ENSMUSG00000033256.15_11	chr2	-	1920	5	NIC	ENSMUSG00000033256.15	novel	1557	6	NA	NA	-6	-6	intron_retention	FALSE	canonical	3	75	junction_4	29.1493996507647	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCACTTTCCGAGCATC	NA	False	NA	-17	True	TATAAA	-32	NA	122199624	122179379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_122180021_122184245_122184679_122187563_122187771_122189928_122190071_122199127
ENSMUSG00000033256.15_2	chr2	-	510	1	ISM	ENSMUSG00000033256.15	ENSMUST00000048635.13	1431	6	17426	1	4729	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCCGAGCATCCACTCG	6274	False	NA	-11	True	TATAAA	-38	NA	122179883	122179373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_122179400_122179900
ENSMUSG00000033256.15_5	chr2	-	1685	5	NIC	ENSMUSG00000033256.15	novel	1557	6	NA	NA	-8	-6	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	56.4773184561732	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCACTTTCCGAGCATC	NA	False	NA	-17	True	TATAAA	-32	NA	122199626	122179379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_122180021_122184245_122184442_122187563_122187771_122189928_122190071_122199127
ENSMUSG00000033256.15_6	chr2	-	1064	4	ISM	ENSMUSG00000033256.15	ENSMUST00000110530.9	910	5	1050	-300	4	-6	3prime_fragment	TRUE	canonical	3	69	junction_2	34.5350063944784	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCACTTTCCGAGCATC	NA	False	NA	-17	True	TATAAA	-32	NA	122187697	122179379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_122180021_122184245_122184366_122184509_122184679_122187563
ENSMUSG00000033257.15_0	chr1	+	4257	20	FSM	ENSMUSG00000033257.15	ENSMUST00000042125.15	10019	20	4	5758	-1	-5	multi-exon	FALSE	canonical	3	108	junction_15	14.6750584571313	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGAGAGCCATGTGTGA	NA	False	NA	5	True	TATAAA	-17	NA	74700907	74737131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_74701049_74712002_74712170_74718056_74719623_74720458_74720569_74720917_74720982_74724477_74724603_74725018_74725130_74725475_74725553_74726362_74726555_74726636_74726720_74726881_74727011_74727322_74727446_74727725_74727825_74728481_74728617_74729118_74729266_74734866_74734970_74735563_74735775_74735900_74735972_74736337_74736409_74736599
ENSMUSG00000033257.15_1	chr1	+	5079	19	NIC	ENSMUSG00000033257.15	novel	10019	20	NA	NA	13	-5	intron_retention	FALSE	canonical	3	108	junction_14	13.9013277632119	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGAGAGCCATGTGTGA	NA	False	NA	5	True	TATAAA	-17	NA	74700921	74737131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_74701049_74712002_74712170_74718056_74720569_74720917_74720982_74724477_74724603_74725018_74725130_74725475_74725553_74726362_74726555_74726636_74726720_74726881_74727011_74727322_74727446_74727725_74727825_74728481_74728617_74729118_74729266_74734866_74734970_74735563_74735775_74735900_74735972_74736337_74736409_74736599
ENSMUSG00000033257.15_37	chr1	+	6985	18	ISM	ENSMUSG00000033257.15	ENSMUST00000042125.15	10019	20	17953	1922	800	-24	3prime_fragment	FALSE	canonical	3	108	junction_13	14.2292160091586	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTTGATTTTCTTTAAC	2583	False	NA	5	True	NA	NA	NA	74718856	74740967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74719623_74720458_74720569_74720917_74720982_74724477_74724603_74725018_74725130_74725475_74725553_74726362_74726555_74726636_74726720_74726881_74727011_74727322_74727446_74727725_74727825_74728481_74728617_74729118_74729266_74734866_74734970_74735563_74735775_74735900_74735972_74736337_74736409_74736599
ENSMUSG00000033257.15_38	chr1	+	3469	17	NIC	ENSMUSG00000033257.15	novel	10019	20	NA	NA	1316	-5	intron_retention	FALSE	canonical	3	108	junction_12	13.2994360782704	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGAGAGCCATGTGTGA	3099	False	NA	5	True	TATAAA	-17	NA	74719372	74737131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_74720569_74720917_74720982_74724477_74724603_74725018_74725130_74725475_74725553_74726362_74726555_74726636_74726720_74726881_74727011_74727322_74727446_74727725_74727825_74728481_74728617_74729118_74729266_74734866_74734970_74735563_74735775_74735900_74735972_74736337_74736409_74736599
ENSMUSG00000033257.15_4	chr1	+	4095	19	NIC	ENSMUSG00000033257.15	novel	10019	20	NA	NA	-1	-5	intron_retention	FALSE	canonical	1	1	junction_1	34.5028179203445	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGAGAGCCATGTGTGA	NA	False	NA	5	True	TATAAA	-17	NA	74700902	74737131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_74701049_74718056_74719623_74720458_74720569_74720917_74720982_74724477_74724603_74725018_74725130_74725475_74725553_74726362_74726555_74726636_74726720_74726881_74727011_74727322_74727446_74727725_74727825_74728481_74728617_74729118_74729266_74734866_74734970_74735563_74735775_74735900_74735972_74736337_74736409_74736599
ENSMUSG00000033257.15_53	chr1	+	3459	1	ISM	ENSMUSG00000033257.15	ENSMUST00000042125.15	10019	20	36622	1905	2633	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTTTTTCAGTGTTGGG	5492	False	NA	22	True	NA	NA	NA	74737525	74740984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74737500_74741000
ENSMUSG00000033257.15_6	chr1	+	4429	20	NIC	ENSMUSG00000033257.15	novel	10019	20	NA	NA	15	-262	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	33.0931699106756	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTGTAAGTGTACTTG	NA	False	NA	NA	False	AGTAAA	-16	NA	74700923	74738775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_74701049_74712002_74712170_74719512_74719623_74720458_74720569_74720917_74720982_74724477_74724603_74725018_74725130_74725475_74725553_74726362_74726555_74726636_74726720_74726881_74727011_74727322_74727446_74727725_74727825_74728481_74728617_74729118_74729266_74734866_74734970_74735563_74735775_74735900_74735972_74736337_74736409_74736599
ENSMUSG00000033272.13_0	chr18	+	2461	3	FSM	ENSMUSG00000033272.13	ENSMUST00000036158.7	2462	3	0	1	0	-1	multi-exon	FALSE	canonical	3	269	junction_1	96	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTACAGTTGTCCTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	36812644	36816910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36812677_36813568_36813668_36814580
ENSMUSG00000033272.13_1	chr18	+	2545	3	FSM	ENSMUSG00000033272.13	ENSMUST00000170288.2	403	3	13	-2155	4	-1	multi-exon	FALSE	canonical	3	17	junction_1	222	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTACAGTTGTCCTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	36812648	36816910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36812677_36813480_36813668_36814580
ENSMUSG00000033272.13_11	chr18	+	1955	1	ISM	ENSMUSG00000033272.13	ENSMUST00000186538.7	2842	3	2688	4	2294	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTACAGTTGTCCTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	36814955	36816910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_36815000_36816900
ENSMUSG00000033272.13_2	chr18	+	2353	4	FSM	ENSMUSG00000033272.13	ENSMUST00000050476.11	2362	4	13	-4	0	-1	multi-exon	TRUE	canonical	3	118	junction_3	140.362229804017	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTACAGTTGTCCTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	36812644	36816910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36812677_36813568_36813668_36814580_36814819_36814926
ENSMUSG00000033272.13_8	chr18	+	2431	2	ISM	ENSMUSG00000033272.13	ENSMUST00000036158.7	2462	3	922	1	905	-1	3prime_fragment	FALSE	canonical	3	461	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTACAGTTGTCCTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	36813566	36816910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_36813668_36814580
ENSMUSG00000033276.19_1	chr1	+	4354	27	NIC	ENSMUSG00000033276.19	novel	5245	27	NA	NA	-6	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	4.85713042611904	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGACTTATGATGACTTGA	NA	False	NA	NA	False	ATTAAA	-12	NA	74640632	74675197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_74640773_74641187_74641361_74642296_74642438_74642555_74642634_74644547_74644679_74648170_74648421_74649930_74650025_74650247_74650418_74650559_74650748_74651844_74651945_74655734_74655879_74661354_74661535_74662443_74662542_74662988_74663095_74664651_74664803_74665171_74665300_74665701_74665807_74666553_74666653_74666743_74666833_74667076_74667141_74667300_74667412_74670744_74670820_74671887_74672060_74672300_74672449_74672665_74672814_74673168_74673916_74674873
ENSMUSG00000033276.19_4	chr1	+	2641	8	ISM	ENSMUSG00000033276.19	ENSMUST00000123154.2	3016	11	1446	11	1446	-8	3prime_fragment	FALSE	canonical	2	5	junction_2	4.82341229032404	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAATGAAAGATGAGTGT	805	False	NA	NA	False	ATTAAA	-7	NA	74667069	74676042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_74667141_74667300_74667412_74670744_74670820_74671887_74672060_74672300_74672449_74672665_74672814_74673168_74673916_74674873
ENSMUSG00000033278.11_3	chr17	-	5510	31	FSM	ENSMUSG00000033278.11	ENSMUST00000223982.2	4802	31	-119	-589	-49	-7	multi-exon	TRUE	canonical	0	0	junction_5	2.09337579574768	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCACAGTGGGTGGCAATC	NA	False	NA	-6	True	ATTAAA	-14	NA	67661501	66973948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_66974677_66984995_66985132_66990365_66990530_66992608_66992735_66995245_66995378_66996338_66996513_66997419_66997570_67000457_67000594_67000766_67000922_67005360_67005478_67032734_67032833_67051714_67051752_67054095_67054173_67069123_67069212_67116460_67116649_67121461_67121537_67124820_67124973_67197918_67198052_67226018_67226056_67227017_67227292_67247477_67247581_67251122_67251325_67260062_67260173_67263804_67264114_67349089_67349384_67352978_67353154_67370036_67370153_67382583_67382663_67402418_67402691_67498243_67498367_67660951
ENSMUSG00000033282.15_1	chr8	-	1760	1	ISM	ENSMUSG00000033282.15	ENSMUST00000047783.14	7009	26	94099	374	23161	-374	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTGCTGTTCCTGCCA	NA	False	NA	NA	False	AATAAA	-40	NA	91945791	91944031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_91944000_91945800
ENSMUSG00000033282.15_2	chr8	-	6619	26	FSM	ENSMUSG00000033282.15	ENSMUST00000047783.14	7009	26	10	380	10	-380	multi-exon	FALSE	canonical	2	7	junction_9	4.90126514279732	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGAAATTCTGCTGTTC	NA	False	NA	NA	False	AATAAA	-34	NA	92039880	91944037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_91946918_91947999_91948134_91951880_91951966_91959435_91959620_91975336_91975408_91977777_91977932_91979109_91979206_91979482_91979567_91979703_91979895_91987372_91987752_91990136_91990289_91996726_91997180_92000238_92000357_92000917_92001098_92001751_92001803_92002257_92002365_92007345_92007486_92012861_92012936_92014213_92014361_92016250_92016357_92025856_92026001_92027405_92027509_92031346_92031646_92034669_92034815_92036965_92037058_92039830
ENSMUSG00000033282.15_3	chr8	-	5258	16	ISM	ENSMUSG00000033282.15	ENSMUST00000047783.14	7009	26	37593	374	1093	-374	3prime_fragment	FALSE	canonical	2	7	junction_9	3.80292285252044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTGCTGTTCCTGCCA	NA	False	NA	NA	False	AATAAA	-40	NA	92002297	91944031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_91946918_91947999_91948134_91951880_91951966_91959435_91959620_91975336_91975408_91977777_91977932_91979109_91979206_91979482_91979567_91979703_91979895_91987372_91987752_91990136_91990289_91996726_91997180_92000238_92000357_92000917_92001098_92001751_92001803_92002257
ENSMUSG00000033282.15_9	chr8	-	472	3	ISM	ENSMUSG00000033282.15	ENSMUST00000139113.8	5046	26	-29	88900	11	133	5prime_fragment	FALSE	canonical	3	21	junction_2	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGTCTAAAGTTGCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	92039879	92034483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_92034815_92036965_92037058_92039830
ENSMUSG00000033285.16_0	chr3	-	3365	27	NIC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	-5	-7	combination_of_known_junctions	FALSE	canonical	3	79	junction_25	119.848400294933	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGACTTGCTGGTTCCC	NA	False	NA	-22	True	ATTAAA	-8	NA	100069718	100045502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067237_100068335_100068539_100069659
ENSMUSG00000033285.16_1	chr3	-	3419	27	FSM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	6	7	-4	-7	multi-exon	FALSE	canonical	3	562	junction_13	50.4098586206493	1155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGACTTGCTGGTTCCC	NA	False	NA	-22	True	ATTAAA	-8	NA	100069717	100045502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
ENSMUSG00000033287.17_0	chr15	+	4205	5	FSM	ENSMUSG00000033287.18	ENSMUST00000161016.8	750	5	-30	-3425	-1	-18	multi-exon	FALSE	canonical	3	98	junction_2	15.305227865014	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGCCTGGCTGCCACC	NA	False	NA	6	True	AATAAA	-13	NA	78312860	78323485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784
ENSMUSG00000033287.17_18	chr15	+	1479	1	NIC	ENSMUSG00000033287.18	novel	1632	7	NA	NA	3827	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCCTGGCTGCCACCCT	4955	False	NA	8	True	AATAAA	-15	NA	78322008	78323487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_78322000_78323500
ENSMUSG00000033287.17_2	chr15	+	3014	6	ISM	ENSMUSG00000033287.18	ENSMUST00000089414.12	1180	7	33	-375	-1	-19	intron_retention	FALSE	canonical	3	64	junction_5	26.081411004775	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTTGGCCTGGCTGCCAC	NA	False	NA	5	True	AATAAA	-12	NA	78312860	78323484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321100
ENSMUSG00000033287.17_5	chr15	+	2848	7	NIC	ENSMUSG00000033287.18	novel	1180	7	NA	NA	4	-17	intron_retention	FALSE	canonical	2	11	junction_6	43.4105082004602	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGCCTGGCTGCCACCC	NA	False	NA	7	True	AATAAA	-14	NA	78312865	78323486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321100_78321195_78321357
ENSMUSG00000033287.17_6	chr15	+	1428	6	FSM	ENSMUSG00000033287.18	ENSMUST00000159771.8	986	6	-1	-441	-1	-19	multi-exon	FALSE	canonical	3	32	junction_5	37.5819105421744	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTTGGCCTGGCTGCCAC	NA	False	NA	5	True	AATAAA	-12	NA	78312860	78323484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78322686
ENSMUSG00000033287.17_8	chr15	+	2760	6	ISM	ENSMUSG00000033287.18	ENSMUST00000162517.9	901	8	97	-790	-1	-16	intron_retention	FALSE	canonical	1	3	junction_5	48.5691259958423	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCCTGGCTGCCACCCT	NA	False	NA	8	True	AATAAA	-15	NA	78312860	78323487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321357
ENSMUSG00000033294.12_0	chr5	-	1875	15	FSM	ENSMUSG00000033294.12	ENSMUST00000042147.6	2075	15	32	168	-5	-168	multi-exon	FALSE	canonical	3	589	junction_9	55.5126847059778	832	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGTTTTTTAGTGTGGT	8873	False	NA	-12	True	AATAAA	-14	NA	110801251	110796451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
ENSMUSG00000033295.15_0	chr4	-	1191	1	ISM	ENSMUSG00000033295.15	ENSMUST00000049074.13	7656	33	81995	7	1331	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTAGGCCTCTGTCTCA	NA	False	NA	-9	True	AATAAA	-23	NA	118066607	118065416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118065400_118066600
ENSMUSG00000033295.15_1	chr4	-	5280	22	ISM	ENSMUSG00000033295.15	ENSMUST00000049074.13	7656	33	59818	8	-487	-8	3prime_fragment	FALSE	canonical	3	357	junction_20	51.8913482012232	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTAGGCCTCTGTCTC	2990	False	NA	-10	True	AATAAA	-22	NA	118088784	118065417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118067087_118067565_118067702_118067813_118067969_118068197_118068324_118068555_118068683_118068896_118069076_118069160_118069447_118069523_118069679_118069916_118070037_118070653_118070830_118070937_118071062_118074288_118074387_118077689_118077806_118080422_118080578_118080914_118081134_118081695_118081790_118081874_118082129_118082225_118082324_118082995_118083575_118083650_118083769_118087891_118088086_118088682
ENSMUSG00000033295.15_13	chr4	-	6095	25	ISM	ENSMUSG00000033295.15	ENSMUST00000049074.13	7656	33	55164	8	204	-8	3prime_fragment	FALSE	canonical	3	357	junction_20	54.2148343526833	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTAGGCCTCTGTCTC	NA	False	NA	-10	True	AATAAA	-22	NA	118093438	118065417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118067087_118067565_118067702_118067813_118067969_118068197_118068324_118068555_118068683_118068896_118069076_118069160_118069447_118069523_118069679_118069916_118070037_118070653_118070830_118070937_118071062_118074288_118074387_118077689_118077806_118080422_118080578_118080914_118081134_118081695_118081790_118081874_118082129_118082225_118082324_118082995_118083575_118083650_118083769_118087891_118088086_118088682_118088989_118092155_118092301_118092745_118092883_118093109
ENSMUSG00000033295.15_2	chr4	-	7615	33	FSM	ENSMUSG00000033295.15	ENSMUST00000049074.13	7656	33	33	8	33	-8	multi-exon	FALSE	canonical	3	357	junction_20	50.8611774834205	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTAGGCCTCTGTCTC	NA	False	NA	-10	True	AATAAA	-22	NA	118148569	118065417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_118067087_118067565_118067702_118067813_118067969_118068197_118068324_118068555_118068683_118068896_118069076_118069160_118069447_118069523_118069679_118069916_118070037_118070653_118070830_118070937_118071062_118074288_118074387_118077689_118077806_118080422_118080578_118080914_118081134_118081695_118081790_118081874_118082129_118082225_118082324_118082995_118083575_118083650_118083769_118087891_118088086_118088682_118088989_118092155_118092301_118092745_118092883_118093109_118093692_118094935_118095206_118106095_118106207_118114685_118114875_118126372_118126515_118126675_118126822_118134545_118134682_118141969_118142050_118148376
ENSMUSG00000033295.15_36	chr4	-	4165	17	ISM	ENSMUSG00000033295.15	ENSMUST00000049074.13	7656	33	66498	8	6193	-8	3prime_fragment	TRUE	canonical	3	364	junction_16	52.4803162504762	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTAGGCCTCTGTCTC	9670	False	NA	-10	True	AATAAA	-22	NA	118082104	118065417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118067087_118067565_118067702_118067813_118067969_118068197_118068324_118068555_118068683_118068896_118069076_118069160_118069447_118069523_118069679_118069916_118070037_118070653_118070830_118070937_118071062_118074288_118074387_118077689_118077806_118080422_118080578_118080914_118081134_118081695_118081790_118081874
ENSMUSG00000033295.15_9	chr4	-	4632	19	ISM	ENSMUSG00000033295.15	ENSMUST00000049074.13	7656	33	65262	8	4957	-8	3prime_fragment	FALSE	canonical	3	364	junction_16	50.0634473985971	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTAGGCCTCTGTCTC	8434	False	NA	-10	True	AATAAA	-22	NA	118083340	118065417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_118067087_118067565_118067702_118067813_118067969_118068197_118068324_118068555_118068683_118068896_118069076_118069160_118069447_118069523_118069679_118069916_118070037_118070653_118070830_118070937_118071062_118074288_118074387_118077689_118077806_118080422_118080578_118080914_118081134_118081695_118081790_118081874_118082129_118082225_118082324_118082995
ENSMUSG00000033306.16_1	chr16	+	3990	13	FSM	ENSMUSG00000033306.16	ENSMUST00000038053.14	15459	13	-79	11548	-46	0	multi-exon	FALSE	canonical	0	0	junction_3	3.30298686376774	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACCTGT	NA	False	NA	NA	False	NA	NA	NA	24212210	24799780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_24212355_24261530_24261641_24275582_24275693_24378341_24378408_24426865_24427068_24480426_24480540_24500495_24500622_24580342_24581027_24663840_24663968_24708539_24708710_24790580_24790760_24795949_24796071_24797942
ENSMUSG00000033306.16_5	chr16	+	3449	1	ISM	ENSMUSG00000033306.16	ENSMUST00000038053.14	15459	13	592813	2777	141178	-2777	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAGA	-14	NA	24805102	24808551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_24805100_24808600
ENSMUSG00000033306.16_6	chr16	+	2503	1	ISM	ENSMUSG00000033306.16	ENSMUST00000038053.14	15459	13	596530	6	144895	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTAACTTGCCTCTGTGTG	NA	False	NA	NA	False	AATAAA	-12	NA	24808819	24811322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_24808800_24811300
ENSMUSG00000033307.8_0	chr10	-	547	3	FSM	ENSMUSG00000033307.8	ENSMUST00000038169.8	544	3	-7	4	-7	-4	multi-exon	FALSE	canonical	3	12818	junction_1	2119	3030	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACGGTTGCCTCAGCTTC	NA	False	NA	-14	True	AATAAA	-14	NA	75696081	75695190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75695378_75695520_75695694_75695894
ENSMUSG00000033313.12_2	chr8	+	1762	2	ISM	ENSMUSG00000033313.12	ENSMUST00000036221.12	1901	3	2047	26	2013	-26	3prime_fragment	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATCCTTTAATATTC	3577	False	NA	NA	False	NA	NA	NA	105993326	105995932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_105993798_105994641
ENSMUSG00000033313.12_5	chr8	+	2727	2	ISM	ENSMUSG00000033313.12	ENSMUST00000036221.12	1901	3	11	7	11	-7	intron_retention	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGTCCTGTGATCTCGA	1541	False	NA	NA	False	AATAAA	-13	NA	105991290	105995951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_105991393_105993326
ENSMUSG00000033316.15_0	chr5	+	2914	11	FSM	ENSMUSG00000033316.15	ENSMUST00000040001.14	2883	11	-33	2	-33	-2	multi-exon	FALSE	canonical	0	0	junction_4	1.48660687473185	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAGCCATACCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	110692187	110769239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110692809_110725305_110725487_110736107_110736275_110737634_110737810_110743931_110744130_110750446_110750565_110761943_110762130_110763262_110763401_110765703_110765800_110767030_110767199_110768373
ENSMUSG00000033318.8_0	chr10	-	898	5	FSM	ENSMUSG00000033318.8	ENSMUST00000038257.7	1370	5	471	1	-27	-1	multi-exon	FALSE	canonical	3	39	junction_1	6.29980158417708	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTTTTTTTCTTTTT	NA	False	NA	-5	True	AATAAA	-20	NA	75670244	75667679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008
ENSMUSG00000033318.8_1	chr10	-	1769	4	NIC	ENSMUSG00000033318.8	novel	1370	5	NA	NA	21	-2	intron_retention	FALSE	canonical	3	39	junction_1	6.94422221866655	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTCCTTTTTTTTCTTTT	NA	False	NA	-6	True	AATAAA	-19	NA	75670276	75667680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_75667929_75668228_75668403_75668494_75669574_75670008
ENSMUSG00000033318.8_12	chr10	-	2168	3	FSM	ENSMUSG00000033318.8	ENSMUST00000218034.2	686	3	-1274	-208	-27	-6	multi-exon	FALSE	canonical	3	39	junction_1	8.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTTTCCTTTTTTTTC	NA	False	NA	-10	True	AATAAA	-15	NA	75670244	75667684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75667929_75668228_75668403_75668494
ENSMUSG00000033318.8_5	chr10	-	365	2	ISM	ENSMUSG00000033318.8	ENSMUST00000218034.2	686	3	626	-213	626	-1	3prime_fragment	FALSE	canonical	3	39	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTTTTTTTCTTTTT	NA	False	NA	-5	True	AATAAA	-20	NA	75668344	75667679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75667929_75668228
ENSMUSG00000033319.6_0	chr18	-	4159	3	FSM	ENSMUSG00000033319.6	ENSMUST00000036226.6	5726	3	65	1502	65	-1502	multi-exon	FALSE	canonical	3	135	junction_1	21.5	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGGTTTTACTGTGTT	NA	False	NA	NA	False	NA	NA	NA	46658973	46636314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_46639457_46657168_46657897_46658684
ENSMUSG00000033319.6_1	chr18	-	2461	1	ISM	ENSMUSG00000033319.6	ENSMUST00000036226.6	5726	3	21759	6	21759	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAACTTAAGTGTGCTCT	NA	False	NA	-9	True	AATAAA	-12	NA	46637279	46634818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_46634800_46637300
ENSMUSG00000033319.6_2	chr18	-	4966	2	ISM	ENSMUSG00000033319.6	ENSMUST00000036226.6	5726	3	1537	11	1537	-11	3prime_fragment	FALSE	canonical	3	135	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCACCAAACTTAAGTGT	NA	False	NA	-14	True	AATAAA	-7	NA	46657501	46634823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_46639457_46657168
ENSMUSG00000033323.15_0	chr18	-	3694	13	FSM	ENSMUSG00000033323.15	ENSMUST00000036229.13	3713	13	13	6	13	0	multi-exon	FALSE	canonical	3	130	junction_8	21.1126278694898	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTGTGTTCTCTGGTG	NA	False	NA	-9	True	AATAAA	-12	NA	80512897	80451179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_80451997_80463657_80463846_80477380_80477544_80489100_80489311_80490638_80490781_80492455_80493464_80494369_80494537_80495519_80495611_80499168_80499320_80501911_80502041_80502416_80502511_80503144_80503229_80512447
ENSMUSG00000033323.15_3	chr18	-	2015	6	ISM	ENSMUSG00000033323.15	ENSMUST00000036229.13	3713	13	19960	6	-8876	0	3prime_fragment	FALSE	canonical	3	154	junction_3	18.8637217960826	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTGTGTTCTCTGGTG	9547	False	NA	-9	True	AATAAA	-12	NA	80492950	80451179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_80451997_80463657_80463846_80477380_80477544_80489100_80489311_80490638_80490781_80492455
ENSMUSG00000033323.15_5	chr18	-	3846	14	NNC	ENSMUSG00000033323.15	novel	3713	13	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	63.2426528230329	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTGTGTTCTCTGGTG	NA	False	NA	-9	True	AATAAA	-12	NA	80512889	80451179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_80451997_80463657_80463846_80477380_80477544_80485226_80485387_80489100_80489311_80490638_80490781_80492455_80493464_80494369_80494537_80495519_80495611_80499168_80499320_80501911_80502041_80502416_80502511_80503144_80503229_80512447
ENSMUSG00000033326.16_0	chr4	-	634	1	ISM	ENSMUSG00000033326.16	ENSMUST00000106406.9	4663	22	42404	49	9120	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGTGCATTACCTTG	NA	False	NA	-10	True	TATAAA	-14	NA	117994836	117994202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117994200_117994800
ENSMUSG00000033326.16_10	chr4	-	4512	22	NIC	ENSMUSG00000033326.16	novel	4550	22	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_21	14.8531740730846	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGTGCATTACCTTG	NA	False	NA	-10	True	TATAAA	-14	NA	118036847	117994202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591_118034774_118036798
ENSMUSG00000033326.16_11	chr4	-	2864	12	ISM	ENSMUSG00000033326.16	ENSMUST00000097911.9	4550	22	19342	47	1345	0	3prime_fragment	FALSE	canonical	3	61	junction_6	10.4802056632397	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGTGCATTACCTTG	7083	False	NA	-10	True	TATAAA	-14	NA	118017509	117994202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330
ENSMUSG00000033326.16_16	chr4	-	4416	21	ISM	ENSMUSG00000033326.16	ENSMUST00000097911.9	4550	22	2125	47	2125	0	3prime_fragment	FALSE	canonical	3	61	junction_6	10.032322761953	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGTGCATTACCTTG	NA	False	NA	-10	True	TATAAA	-14	NA	118034726	117994202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591
ENSMUSG00000033326.16_18	chr4	-	2235	9	ISM	ENSMUSG00000033326.16	ENSMUST00000097911.9	4550	22	32599	47	-296	0	3prime_fragment	FALSE	canonical	3	61	junction_6	9.9968745115661	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGTGCATTACCTTG	8238	False	NA	-10	True	TATAAA	-14	NA	118004252	117994202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194
ENSMUSG00000033326.16_20	chr4	-	3906	18	ISM	ENSMUSG00000033326.16	ENSMUST00000097911.9	4550	22	11160	47	-6837	0	3prime_fragment	FALSE	canonical	3	61	junction_6	10.5164231423684	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGTGCATTACCTTG	3527	False	NA	-10	True	TATAAA	-14	NA	118025691	117994202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581
ENSMUSG00000033326.16_21	chr4	-	4239	20	ISM	ENSMUSG00000033326.16	ENSMUST00000097911.9	4550	22	3967	47	3967	0	3prime_fragment	FALSE	canonical	3	61	junction_6	10.0444993284386	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGTGCATTACCTTG	NA	False	NA	-10	True	TATAAA	-14	NA	118032884	117994202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750
ENSMUSG00000033326.16_5	chr4	-	3432	14	ISM	ENSMUSG00000033326.16	ENSMUST00000097911.9	4550	22	17093	38	-904	9	3prime_fragment	FALSE	canonical	3	61	junction_6	10.9041005261334	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTACCTTGTCCTTAGCA	9460	False	NA	-1	True	TATAAA	-23	NA	118019758	117994193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591
ENSMUSG00000033326.16_6	chr4	-	4572	22	FSM	ENSMUSG00000033326.16	ENSMUST00000106406.9	4663	22	42	49	-23	0	multi-exon	FALSE	canonical	3	48	junction_21	11.6270464270502	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGTGCATTACCTTG	NA	False	NA	-10	True	TATAAA	-14	NA	118037198	117994202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591_118034774_118037089
ENSMUSG00000033326.16_7	chr4	-	3155	13	ISM	ENSMUSG00000033326.16	ENSMUST00000097911.9	4550	22	17943	5	-54	-5	3prime_fragment	FALSE	canonical	3	61	junction_6	11.29035970296	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGGATTGACTGTGGT	5684	False	NA	-8	True	AATAAA	-9	NA	118018908	117994160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851
ENSMUSG00000033335.18_0	chr9	+	3013	20	NIC	ENSMUSG00000033335.18	novel	2715	20	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	156	junction_19	153.943760641486	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACTCTGCAGATGTGTC	5880	False	NA	15	True	AATAAA	-16	NA	21336241	21419050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718
ENSMUSG00000033335.18_1	chr9	+	3492	21	FSM	ENSMUSG00000033335.18	ENSMUST00000173397.8	3510	21	16	2	3	-2	multi-exon	FALSE	canonical	2	185	junction_20	132.122244531343	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTACGTGTGTGGGCCTT	5882	False	NA	16	True	AATAAA	-26	NA	21336243	21418432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417631
ENSMUSG00000033335.18_2	chr9	+	3495	21	FSM	ENSMUSG00000033335.18	ENSMUST00000072362.14	3502	21	3	4	3	-2	multi-exon	FALSE	canonical	2	327	junction_20	112.703715555433	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTACGTGTGTGGGCCTT	5882	False	NA	16	True	AATAAA	-26	NA	21336243	21418432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
ENSMUSG00000033335.18_3	chr9	+	3481	20	NIC	ENSMUSG00000033335.18	novel	3502	21	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	2	224	junction_13	132.11218266634	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGCTACGTGTGTGGGC	5881	False	NA	13	True	AATAAA	-23	NA	21336242	21418429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
ENSMUSG00000033335.18_4	chr9	+	3482	20	NIC	ENSMUSG00000033335.18	novel	3510	21	NA	NA	1	-2	combination_of_known_junctions	TRUE	canonical	2	185	junction_19	149.780670673753	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTACGTGTGTGGGCCTT	5880	False	NA	16	True	AATAAA	-26	NA	21336241	21418432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417631
ENSMUSG00000033335.18_5	chr9	+	3025	21	NIC	ENSMUSG00000033335.18	novel	3063	21	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	156	junction_20	136.611712528612	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACTCTGCAGATGTGTC	5880	False	NA	15	True	AATAAA	-16	NA	21336241	21419050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718
ENSMUSG00000033350.8_0	chr9	-	3073	2	FSM	ENSMUSG00000033350.8	ENSMUST00000036267.8	7328	2	-566	4821	-566	-4821	multi-exon	FALSE	canonical	3	17	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGATAATAAATAATAGTCT	NA	False	NA	-31	True	AATAAA	-2	NA	95289341	95286165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_95288527_95288629
ENSMUSG00000033350.8_1	chr9	-	1791	1	ISM	ENSMUSG00000033350.8	ENSMUST00000036267.8	7328	2	829	4811	829	-4811	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATAGTCTTTTTATATTT	NA	False	NA	-21	True	AATAAA	-12	NA	95287946	95286155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_95286200_95287900
ENSMUSG00000033352.12_2	chr11	-	3588	11	FSM	ENSMUSG00000033352.12	ENSMUST00000046963.10	3695	11	-3	110	-3	-110	multi-exon	FALSE	canonical	3	217	junction_10	28.4703354388388	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTCTTGTAATCTGATT	NA	False	NA	-17	True	AATAAA	-14	NA	65679126	65579178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65626017_65626193_65647094_65647198_65678961
ENSMUSG00000033352.12_3	chr11	-	3622	12	NIC	ENSMUSG00000033352.12	novel	3695	11	NA	NA	-3	-109	combination_of_known_junctions	FALSE	canonical	3	50	junction_10	82.1603954379018	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTCTTGTAATCTGATTT	NA	False	NA	-16	True	AATAAA	-15	NA	65679126	65579177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65626017_65626193_65647094_65647198_65666558_65666592_65678961
ENSMUSG00000033352.12_5	chr11	-	3415	10	NIC	ENSMUSG00000033352.12	novel	3695	11	NA	NA	-5	-110	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	72.4284235863924	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTCTTGTAATCTGATT	NA	False	NA	-17	True	AATAAA	-14	NA	65679128	65579178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65647094_65647198_65678961
ENSMUSG00000033352.12_8	chr11	-	1709	1	ISM	ENSMUSG00000033352.12	ENSMUST00000046963.10	3695	11	98242	104	6959	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTAATCTGATTTTCTGC	NA	False	NA	-11	True	AATAAA	-20	NA	65580881	65579172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_65579200_65580900
ENSMUSG00000033356.4_0	chr15	-	2774	9	FSM	ENSMUSG00000033356.4	ENSMUST00000049151.4	2840	9	58	8	-3	-8	multi-exon	FALSE	canonical	3	33	junction_8	4.64858849544676	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACTATCGAATTGTCTC	NA	False	NA	-11	True	AATAAA	-19	NA	94441370	94420576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_94421533_94423671_94423726_94425677_94425956_94427336_94427419_94429454_94429554_94431364_94431558_94434394_94434555_94437933_94438856_94441340
ENSMUSG00000033356.4_6	chr15	-	2059	7	ISM	ENSMUSG00000033356.4	ENSMUST00000049151.4	2840	9	6637	8	6576	-8	3prime_fragment	FALSE	canonical	3	43	junction_6	2.26691175145591	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACTATCGAATTGTCTC	NA	False	NA	-11	True	AATAAA	-19	NA	94434791	94420576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_94421533_94423671_94423726_94425677_94425956_94427336_94427419_94429454_94429554_94431364_94431558_94434394
ENSMUSG00000033356.4_7	chr15	-	2743	8	ISM	ENSMUSG00000033356.4	ENSMUST00000049151.4	2840	9	2574	8	2513	-8	3prime_fragment	FALSE	canonical	3	43	junction_6	2.1189138534559	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACTATCGAATTGTCTC	NA	False	NA	-11	True	AATAAA	-19	NA	94438854	94420576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_94421533_94423671_94423726_94425677_94425956_94427336_94427419_94429454_94429554_94431364_94431558_94434394_94434555_94437933
ENSMUSG00000033361.14_0	chrX	+	5444	4	FSM	ENSMUSG00000033361.14	ENSMUST00000170096.8	3408	4	-155	-1881	-154	-731	multi-exon	FALSE	canonical	0	0	junction_1	4.49691252107735	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTATCCTGTGATTAAAT	NA	False	NA	NA	False	NA	NA	NA	71006075	71015597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_71006386_71009420_71009459_71010107_71010269_71010662
ENSMUSG00000033361.14_2	chrX	+	5925	4	FSM	ENSMUSG00000033361.14	ENSMUST00000048790.7	5931	4	1	5	1	-5	multi-exon	FALSE	canonical	3	9	junction_1	0.471404520791032	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCACTTGTACCTTGTCCT	NA	False	NA	1	True	AATAAA	-12	NA	71006588	71016323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_71006654_71009420_71009459_71010107_71010269_71010662
ENSMUSG00000033361.14_4	chrX	+	3705	1	ISM	ENSMUSG00000033361.14	ENSMUST00000048790.7	5931	4	6031	5	6031	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCACTTGTACCTTGTCCT	NA	False	NA	1	True	AATAAA	-12	NA	71012618	71016323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_71012600_71016300
ENSMUSG00000033364.14_0	chr1	-	7181	25	NIC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	-3	-2	combination_of_known_junctions	TRUE	canonical	3	147	junction_23	24.5588861491903	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAGTTTGATTTATT	NA	False	NA	-3	True	ATTAAA	-14	NA	74544968	74474671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
ENSMUSG00000033364.14_1	chr1	-	7118	24	FSM	ENSMUSG00000033364.14	ENSMUST00000044260.11	7111	24	-9	2	-6	-2	multi-exon	FALSE	canonical	3	36	junction_8	42.9588980155981	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAGTTTGATTTATT	NA	False	NA	-3	True	ATTAAA	-14	NA	74544971	74474671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
ENSMUSG00000033364.14_10	chr1	-	4678	7	ISM	ENSMUSG00000033364.14	ENSMUST00000188012.7	1836	12	13588	-3614	13588	-2	3prime_fragment	FALSE	canonical	3	207	junction_4	11.2361025271221	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAGTTTGATTTATT	NA	False	NA	-3	True	ATTAAA	-14	NA	74493145	74474671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986
ENSMUSG00000033364.14_14	chr1	-	7447	25	NIC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	-282	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_24	45.4335404434017	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAGTTTGATTTATT	NA	False	NA	-3	True	ATTAAA	-14	NA	74545724	74474671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74545308
ENSMUSG00000033364.14_2	chr1	-	2826	1	ISM	ENSMUSG00000033364.14	ENSMUST00000044260.11	7111	24	67467	0	29238	0	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTAGTTTGATTTATTTG	NA	False	NA	-1	True	ATTAAA	-16	NA	74477495	74474669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_74474700_74477500
ENSMUSG00000033365.15_0	chr4	-	3586	20	FSM	ENSMUSG00000033365.15	ENSMUST00000036156.6	3595	20	2	7	2	-7	multi-exon	FALSE	canonical	3	46	junction_19	11.8213853822033	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGCCTCTGCCTCCTT	NA	False	NA	-7	True	AGTAAA	-12	NA	117772194	117751689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117751855_117751940_117752123_117752408_117752499_117752616_117752676_117752759_117752827_117754964_117755018_117757845_117757943_117758114_117758253_117758754_117758836_117760317_117760462_117760594_117760730_117760890_117760918_117760994_117761177_117761573_117761722_117761806_117761928_117762101_117762269_117762377_117762520_117762639_117762781_117768969_117769707_117771484
ENSMUSG00000033365.15_11	chr4	-	3506	20	NIC	ENSMUSG00000033365.15	novel	3595	20	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	17.6376266140367	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGCCTCTGCCTCCTT	NA	False	NA	-7	True	AGTAAA	-12	NA	117772194	117751689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117751855_117751940_117752043_117752408_117752499_117752616_117752676_117752759_117752827_117754964_117755018_117757845_117757943_117758114_117758253_117758754_117758836_117760317_117760462_117760594_117760730_117760890_117760918_117760994_117761177_117761573_117761722_117761806_117761928_117762101_117762269_117762377_117762520_117762639_117762781_117768969_117769707_117771484
ENSMUSG00000033365.15_3	chr4	-	5330	19	ISM	ENSMUSG00000033365.15	ENSMUST00000036156.6	3595	20	36	7	36	-7	intron_retention	FALSE	canonical	3	50	junction_14	10.6920993099728	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGCCTCTGCCTCCTT	NA	False	NA	-7	True	AGTAAA	-12	NA	117772160	117751689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117751855_117751940_117752123_117752408_117752499_117752616_117752676_117752759_117752827_117754964_117755018_117757845_117757943_117758114_117758253_117758754_117758836_117760317_117760462_117760594_117760730_117760890_117760918_117760994_117761177_117761573_117761722_117761806_117761928_117762101_117762269_117762377_117762520_117762639_117762781_117768969
ENSMUSG00000033373.17_0	chr12	+	2597	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	15	1	-4	-1	multi-exon	FALSE	canonical	3	246	junction_4	27.7548298231568	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGCTGTCTTTTTTTTTT	NA	False	NA	13	True	AATAAA	-14	NA	76884202	76968185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
ENSMUSG00000033373.17_18	chr12	+	1895	6	NNC	ENSMUSG00000033373.17	novel	384	2	NA	NA	-7294	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	113.544000281829	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	NA	False	NA	14	True	AATAAA	-15	NA	76948965	76968186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_76949034_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
ENSMUSG00000033379.14_0	chr4	-	2523	2	ISM	ENSMUSG00000033379.14	ENSMUST00000150204.8	935	7	5	-2	5	-1	intron_retention	FALSE	canonical	3	2592	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCAGTGAGGCTTCTGTTG	NA	False	NA	-6	True	AATAAA	-16	NA	117744512	117741527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117741839_117742300
ENSMUSG00000033379.14_1	chr4	-	981	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	14	5	5	-1	multi-exon	FALSE	canonical	3	2123	junction_7	187.196393650942	897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCAGTGAGGCTTCTGTTG	NA	False	NA	-6	True	AATAAA	-16	NA	117744512	117741527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUSG00000033379.14_13	chr4	-	2985	1	NIC	ENSMUSG00000033379.14	novel	1000	8	NA	NA	5	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCAGTGAGGCTTCTGTTG	NA	False	NA	-6	True	AATAAA	-16	NA	117744512	117741527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117741500_117744500
ENSMUSG00000033379.14_4	chr4	-	1513	7	ISM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	13	5	4	-1	intron_retention	FALSE	canonical	3	2536	junction_3	83.3979749287848	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCAGTGAGGCTTCTGTTG	NA	False	NA	-6	True	AATAAA	-16	NA	117744513	117741527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786
ENSMUSG00000033379.14_5	chr4	-	1038	8	NIC	ENSMUSG00000033379.14	novel	1000	8	NA	NA	4	-1	combination_of_known_junctions	FALSE	canonical	3	113	junction_7	877.288982709616	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCAGTGAGGCTTCTGTTG	NA	False	NA	-6	True	AATAAA	-16	NA	117744513	117741527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743892_117744366
ENSMUSG00000033382.16_0	chr18	-	5382	29	NNC	ENSMUSG00000033382.16	novel	5194	29	NA	NA	-280	-89	at_least_one_novel_splicesite	FALSE	canonical	3	164	junction_9	17.2092464467595	260	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTTATTAGATGCCTT	NA	False	NA	-111	True	AATAAA	-18	NA	21029430	20950368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970247_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999261_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
ENSMUSG00000033382.16_2	chr18	-	5343	29	NNC	ENSMUSG00000033382.16	novel	5194	29	NA	NA	-283	-89	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_23	35.6899917372375	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTTATTAGATGCCTT	NA	False	NA	-111	True	AATAAA	-18	NA	21029433	20950368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970247_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999219_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
ENSMUSG00000033382.16_3	chr18	-	5384	29	FSM	ENSMUSG00000033382.16	ENSMUST00000225661.3	5194	29	-279	89	-279	-89	multi-exon	TRUE	canonical	3	24	junction_23	36.8553951689739	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTTATTAGATGCCTT	NA	False	NA	-111	True	AATAAA	-18	NA	21029429	20950368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970247_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999264_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
ENSMUSG00000033386.11_12	chr3	+	2158	16	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	2100	-2	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	74.6183176795975	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-44	NA	116655315	116697125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_116655359_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
ENSMUSG00000033386.11_39	chr3	+	2204	16	ISM	ENSMUSG00000033386.11	ENSMUST00000040260.11	2377	17	6723	4	6620	-4	3prime_fragment	FALSE	canonical	3	287	junction_10	27.0313398360742	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-42	NA	116659835	116697123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
ENSMUSG00000033386.11_53	chr3	+	2117	15	FSM	ENSMUSG00000033386.11	ENSMUST00000195905.5	6823	15	5	4701	5	-2	multi-exon	FALSE	canonical	3	287	junction_9	27.5725388377491	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-44	NA	116671880	116697125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
ENSMUSG00000033386.11_74	chr3	+	2412	1	ISM	ENSMUSG00000033386.11	ENSMUST00000195905.5	6823	15	27065	474	8582	-474	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAAACGTTCCTTGTAGC	NA	False	NA	6	True	AATAAA	-14	NA	116698940	116701352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_116698900_116701400
ENSMUSG00000033386.11_8	chr3	+	2225	17	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	2122	-2	at_least_one_novel_splicesite	FALSE	canonical	3	203	junction_1	41.3407618912617	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-44	NA	116655337	116697125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_116655359_116659837_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
ENSMUSG00000033389.17_12	chr11	-	3998	20	NIC	ENSMUSG00000033389.17	novel	4074	21	NA	NA	14	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	5.70367039332382	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCCTGAGCTTGGCACA	NA	False	NA	-10	True	ATTAAA	-10	NA	65053773	64892874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_64894277_64898888_64899267_64900707_64900866_64902696_64902925_64912766_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924_64944043_64948122_64948200_64950649_64950762_64957905_64957983_64965262_64965368_64965996_64966037_65053411
ENSMUSG00000033389.17_15	chr11	-	2125	16	ISM	ENSMUSG00000033389.17	ENSMUST00000047463.15	4074	21	8	19615	8	-19613	5prime_fragment	FALSE	canonical	3	13	junction_12	3.56775684273591	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGGGAATTTTTTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	65053779	64912479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924_64944043_64948122_64948200_64950649_64950762_64957905_64957983_64965262_64965368_64965996_64966037_65053411
ENSMUSG00000033389.17_4	chr11	-	4058	21	FSM	ENSMUSG00000033389.17	ENSMUST00000047463.15	4074	21	13	3	13	-1	multi-exon	FALSE	canonical	3	13	junction_17	3.6779749863206	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTTGGCACATGGTCTT	NA	False	NA	-3	True	ATTAAA	-17	NA	65053774	64892867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_64894277_64896279_64896332_64898888_64899267_64900707_64900866_64902696_64902925_64912766_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924_64944043_64948122_64948200_64950649_64950762_64957905_64957983_64965262_64965368_64965996_64966037_65053411
ENSMUSG00000033389.17_5	chr11	-	2453	1	NIC	ENSMUSG00000033389.17	novel	4074	21	NA	NA	55342	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGCACATGGTCTTGT	NA	False	NA	-1	True	ATTAAA	-19	NA	64895318	64892865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_64892900_64895300
ENSMUSG00000033392.17_0	chr9	+	6291	36	NIC	ENSMUSG00000033392.17	novel	2727	16	NA	NA	-3	3	combination_of_known_splicesites	FALSE	canonical	3	90	junction_24	28.274947445773	310	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGACCTTAACTATGTAG	NA	False	NA	18	True	AATAAA	-19	NA	113570537	113748753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_113570944_113590657_113590737_113595635_113595740_113599264_113599357_113600850_113600927_113602747_113602846_113615631_113615703_113642209_113642357_113664242_113664323_113670626_113670720_113673141_113673288_113676770_113676907_113677548_113677620_113679190_113679251_113680890_113680969_113681690_113681859_113682416_113682473_113683240_113683415_113691253_113691356_113697615_113697787_113699690_113699799_113705311_113705419_113709009_113709255_113710755_113710820_113719025_113719190_113721464_113721544_113725709_113725854_113728523_113728668_113730558_113730666_113732909_113733064_113735064_113735294_113737754_113737949_113738483_113738613_113740477_113740685_113744205_113744323_113747062
ENSMUSG00000033396.14_16	chr2	-	1777	11	ISM	ENSMUSG00000033396.14	ENSMUST00000036450.8	7671	40	53256	271	53166	-271	3prime_fragment	FALSE	canonical	3	79	junction_4	21.3344791358964	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTTGAGTTGAAAAGCCC	NA	False	NA	-6	True	AATAAA	-21	NA	121895611	121884271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121884542_121884860_121885013_121885846_121886003_121886177_121886267_121886546_121886716_121888823_121888932_121889902_121890037_121890180_121890319_121890651_121890851_121891402_121891543_121895389
ENSMUSG00000033396.14_3	chr2	-	7384	40	FSM	ENSMUSG00000033396.14	ENSMUST00000036450.8	7671	40	12	275	1	-275	multi-exon	FALSE	canonical	0	0	junction_26	28.2050349648808	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCCATTTGAGTTGAAAA	6991	False	NA	-10	True	AATAAA	-17	NA	121948855	121884275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_121884542_121884860_121885013_121885846_121886003_121886177_121886267_121886546_121886716_121888823_121888932_121889902_121890037_121890180_121890319_121890651_121890851_121891402_121891543_121895389_121896138_121896725_121896941_121899219_121899383_121900349_121900458_121901345_121901547_121902535_121902791_121903326_121903487_121904984_121905094_121905775_121905982_121910713_121910880_121912335_121912403_121913880_121914043_121915375_121915522_121917343_121917451_121918613_121918818_121922637_121922849_121923445_121923622_121923896_121924025_121924938_121925011_121926070_121926248_121927736_121927913_121928581_121928738_121932126_121932260_121934388_121934535_121938517_121938967_121939173_121939312_121942196_121942390_121943495_121943721_121945088_121945271_121948601
ENSMUSG00000033396.14_50	chr2	-	1806	6	FSM	ENSMUSG00000033396.14	ENSMUST00000135847.2	1813	6	1	6	1	-6	multi-exon	FALSE	canonical	3	87	junction_3	7.08237248385031	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACTGTCTTGTGTGTCT	6991	False	NA	NA	False	NA	NA	NA	121948855	121938152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_121938967_121939173_121939312_121942196_121942390_121943495_121943721_121945088_121945271_121948601
ENSMUSG00000033396.14_61	chr2	-	2908	15	ISM	ENSMUSG00000033396.14	ENSMUST00000036450.8	7671	40	47398	276	47308	-276	3prime_fragment	FALSE	canonical	3	79	junction_4	18.9495840242966	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCCCATTTGAGTTGAAA	NA	False	NA	-11	True	AATAAA	-16	NA	121901469	121884276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121884542_121884860_121885013_121885846_121886003_121886177_121886267_121886546_121886716_121888823_121888932_121889902_121890037_121890180_121890319_121890651_121890851_121891402_121891543_121895389_121896138_121896725_121896941_121899219_121899383_121900349_121900458_121901345
ENSMUSG00000033396.14_9	chr2	-	6241	35	ISM	ENSMUSG00000033396.14	ENSMUST00000036450.8	7671	40	10052	275	9962	-275	3prime_fragment	FALSE	canonical	0	0	junction_26	29.908062701099	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCCATTTGAGTTGAAAA	NA	False	NA	-10	True	AATAAA	-17	NA	121938815	121884275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121884542_121884860_121885013_121885846_121886003_121886177_121886267_121886546_121886716_121888823_121888932_121889902_121890037_121890180_121890319_121890651_121890851_121891402_121891543_121895389_121896138_121896725_121896941_121899219_121899383_121900349_121900458_121901345_121901547_121902535_121902791_121903326_121903487_121904984_121905094_121905775_121905982_121910713_121910880_121912335_121912403_121913880_121914043_121915375_121915522_121917343_121917451_121918613_121918818_121922637_121922849_121923445_121923622_121923896_121924025_121924938_121925011_121926070_121926248_121927736_121927913_121928581_121928738_121932126_121932260_121934388_121934535_121938517
ENSMUSG00000033400.15_0	chr3	-	178	1	ISM	ENSMUSG00000033400.15	ENSMUST00000040603.14	9625	34	67562	428	40646	-428	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATATTTGAGGAC	NA	False	NA	NA	False	NA	NA	NA	116534253	116534075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_116534100_116534300
ENSMUSG00000033400.15_1	chr3	-	5107	34	FSM	ENSMUSG00000033400.15	ENSMUST00000040603.14	9625	34	-68	4586	-68	-1534	multi-exon	TRUE	canonical	3	13	junction_28	10.2172903022423	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	116601883	116538233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_116538585_116540028_116540163_116540265_116540354_116544046_116544145_116545633_116545846_116546899_116547013_116548521_116548658_116551887_116552000_116552339_116552566_116562434_116562538_116564988_116565165_116566035_116566170_116566412_116566550_116570177_116570309_116572267_116572403_116572703_116572817_116572904_116573030_116574374_116574526_116574640_116574797_116574891_116574994_116575236_116575401_116576168_116576293_116578101_116578290_116578708_116578849_116580178_116580277_116580367_116580471_116580878_116581003_116581919_116582032_116582174_116582357_116584654_116584859_116585666_116585834_116587260_116587472_116600916_116601067_116601676
ENSMUSG00000033405.5_0	chr14	-	3165	3	ISM	ENSMUSG00000033405.5	ENSMUST00000043813.3	3579	5	23005	8	-26	-8	3prime_fragment	FALSE	canonical	2	19	junction_1	0.5	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTTAATGATCTCAGAGA	NA	False	NA	NA	False	AATAAA	-13	NA	73762677	73756324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_73759115_73760737_73760935_73762499
ENSMUSG00000033405.5_1	chr14	-	4789	2	NIC	ENSMUSG00000033405.5	novel	3579	5	NA	NA	-26	-7	intron_retention	FALSE	canonical	3	20	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTAATGATCTCAGAGAC	NA	False	NA	NA	False	AATAAA	-14	NA	73762677	73756323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_73760935_73762499
ENSMUSG00000033411.17_0	chr2	+	3552	13	FSM	ENSMUSG00000033411.17	ENSMUST00000036647.13	5053	13	473	1028	-6	-1	multi-exon	FALSE	canonical	3	334	junction_9	41.0940655353327	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATGCTCTTTCTCAAAA	NA	False	NA	10	True	AATAAA	-20	NA	121786954	121843095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
ENSMUSG00000033411.17_52	chr2	+	3946	1	Genic_Genomic	ENSMUSG00000033411.17	novel	NA	NA	NA	NA	32559	1674	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACTTTCTTTGATGACA	NA	False	NA	9	True	NA	NA	NA	121841851	121845797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_121841900_121845800
ENSMUSG00000033411.17_7	chr2	+	4229	13	FSM	ENSMUSG00000033411.17	ENSMUST00000110578.8	3386	13	63	-906	-6	-297	multi-exon	FALSE	canonical	3	37	junction_3	105.582774268449	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATGTTTGACTTTTAAG	NA	False	NA	NA	False	ATTAAA	-19	NA	121786954	121843775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809375_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
ENSMUSG00000033416.16_0	chr10	-	2905	6	FSM	ENSMUSG00000033416.16	ENSMUST00000039796.14	3500	6	54	541	-29	1	multi-exon	FALSE	canonical	3	66	junction_3	9.3893556754444	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTGGTAGCACCCTTTG	NA	False	NA	-12	True	AATAAA	-12	NA	75353161	75342657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75344804_75345425_75345668_75345865_75345958_75346954_75347121_75347905_75347991_75352987
ENSMUSG00000033416.16_1	chr10	-	2867	6	NIC	ENSMUSG00000033416.16	novel	2843	6	NA	NA	10	1	combination_of_known_junctions	FALSE	canonical	2	8	junction_5	28.7026131214564	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTGGTAGCACCCTTTG	NA	False	NA	-12	True	AATAAA	-12	NA	75353710	75342657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_75344804_75345425_75345668_75345865_75345958_75346954_75347121_75347905_75347991_75353574
ENSMUSG00000033416.16_14	chr10	-	2142	1	ISM	ENSMUSG00000033416.16	ENSMUST00000039796.14	3500	6	8412	545	2295	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGTACAGTGGTAGCACCC	NA	False	NA	-16	True	AATAAA	-8	NA	75344803	75342661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75342700_75344800
ENSMUSG00000033416.16_7	chr10	-	3525	5	ISM	ENSMUSG00000033416.16	ENSMUST00000145890.8	2816	9	-51	155712	-26	2	5prime_fragment	FALSE	canonical	3	66	junction_2	10.4880884817015	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGGTAGCACCCTTTGT	NA	False	NA	-11	True	AATAAA	-13	NA	75353158	75342656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75345668_75345865_75345958_75346954_75347121_75347905_75347991_75352987
ENSMUSG00000033417.17_1	chr19	-	3185	9	FSM	ENSMUSG00000033417.17	ENSMUST00000081790.15	5792	9	105	2502	35	130	multi-exon	FALSE	canonical	2	169	junction_2	23.687747360186	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTTGTGTTAGTAAATT	6451	False	NA	0	True	AATAAA	-17	NA	60569358	60515635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_60517526_60517902_60517947_60522573_60522713_60525851_60525942_60531447_60531551_60533883_60533980_60551599_60551703_60552605_60552733_60568765
ENSMUSG00000033417.17_4	chr19	-	3411	8	FSM	ENSMUSG00000033417.17	ENSMUST00000166712.9	1305	8	42	-2148	24	435	multi-exon	FALSE	canonical	2	21	junction_3	70.8312164549628	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTTGTATTTCCTGAAA	6440	False	NA	-7	True	AATAAA	-13	NA	60569369	60515330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_60517526_60517902_60517947_60522573_60522713_60531447_60531551_60533883_60533980_60551599_60551703_60552605_60552733_60568765
ENSMUSG00000033417.17_7	chr19	-	3069	1	ISM	ENSMUSG00000033417.17	ENSMUST00000081790.15	5792	9	53225	36	9749	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTAAACTTGCTTTTTA	NA	False	NA	-35	True	AATAAA	-13	NA	60516238	60513169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_60513200_60516200
ENSMUSG00000033419.17_1	chr9	-	2190	8	NIC	ENSMUSG00000033419.17	novel	4336	30	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	8.43220260764212	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAATGCAAACGTAATC	NA	False	NA	NA	False	AATAAA	-12	NA	86680774	86647988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_86649390_86655571_86655677_86656249_86656334_86657644_86657745_86659086_86659118_86663622_86663773_86665352_86665488_86680590
ENSMUSG00000033423.17_1	chr4	+	1001	7	NNC	ENSMUSG00000033423.17	novel	596	4	NA	NA	-24	-4	at_least_one_novel_splicesite	TRUE	canonical	3	91	junction_1	242.081769931842	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCCTAGTGTGTCTGGA	NA	False	NA	5	True	AATAAA	-12	NA	117407537	117531474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_117407560_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ENSMUSG00000033423.17_27	chr4	+	1689	9	NNC	ENSMUSG00000033423.17	novel	1719	9	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_2	238.585938395371	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGGTCCTAGTGTGTC	NA	False	NA	1	True	AATAAA	-8	NA	117407561	117531470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_117407928_117410164_117410241_117421823_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ENSMUSG00000033423.17_29	chr4	+	1337	8	ISM	ENSMUSG00000033423.17	ENSMUST00000037127.15	1719	9	2601	18	356	-2	3prime_fragment	FALSE	canonical	3	348	junction_1	142.213550259991	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTAGTGTGTCTGGAGC	NA	False	NA	7	True	AATAAA	-14	NA	117410162	117531476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ENSMUSG00000033423.17_3	chr4	+	1274	8	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-23	-8	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_1	221.525785111774	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGGTCCTAGTGTGTC	NA	False	NA	1	True	AATAAA	-8	NA	117407538	117531470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_117407560_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ENSMUSG00000033423.17_4	chr4	+	1350	9	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-21	-6	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	225.311693826574	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGTCCTAGTGTGTCTG	NA	False	NA	3	True	AATAAA	-10	NA	117407540	117531472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_117407560_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ENSMUSG00000033423.17_5	chr4	+	1695	9	FSM	ENSMUSG00000033423.17	ENSMUST00000037127.15	1719	9	0	24	0	-8	multi-exon	FALSE	canonical	3	273	junction_1	182.065535934179	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGGTCCTAGTGTGTC	NA	False	NA	1	True	AATAAA	-8	NA	117407561	117531470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_117407928_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ENSMUSG00000033423.17_58	chr4	+	1255	7	ISM	ENSMUSG00000033423.17	ENSMUST00000037127.15	1719	9	14254	24	-139	-8	3prime_fragment	FALSE	canonical	3	580	junction_1	77.4295378607759	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGGTCCTAGTGTGTC	NA	False	NA	1	True	AATAAA	-8	NA	117421815	117531470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ENSMUSG00000033429.11_11	chr7	+	1311	2	ISM	ENSMUSG00000033429.11	ENSMUST00000037205.11	828	3	6827	15	6697	-11	3prime_fragment	FALSE	canonical	3	203	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTATATACATTCATGTAT	NA	False	NA	10	True	ATTAAA	-11	NA	64049219	64061858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_64050255_64061582
ENSMUSG00000033429.11_2	chr7	+	380	2	FSM	ENSMUSG00000033429.11	ENSMUST00000206882.2	391	2	4	7	4	-7	multi-exon	FALSE	canonical	3	49	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACATTCATGTATTTGT	NA	False	NA	14	True	ATTAAA	-15	NA	64042491	64061862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_64042592_64061582
ENSMUSG00000033429.11_3	chr7	+	551	3	FSM	ENSMUSG00000033429.11	ENSMUST00000206194.2	532	3	-24	5	11	-5	multi-exon	FALSE	canonical	3	108	junction_2	103	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATTCATGTATTTGTTA	NA	False	NA	16	True	ATTAAA	-17	NA	64042498	64061864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_64042592_64049916_64050093_64061582
ENSMUSG00000033429.11_4	chr7	+	705	3	FSM	ENSMUSG00000033429.11	ENSMUST00000037205.11	828	3	112	11	17	-7	multi-exon	FALSE	canonical	3	203	junction_2	55.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACATTCATGTATTTGT	NA	False	NA	14	True	ATTAAA	-15	NA	64042504	64061862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_64042592_64049916_64050255_64061582
ENSMUSG00000033429.11_5	chr7	+	2174	3	NIC	ENSMUSG00000033429.11	novel	828	3	NA	NA	-12	-8	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	88	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATACATTCATGTATTTG	NA	False	NA	13	True	ATTAAA	-14	NA	64042510	64061861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_64042592_64048440_64050255_64061582
ENSMUSG00000033429.11_6	chr7	+	518	2	FSM	ENSMUSG00000033429.11	ENSMUST00000206138.2	327	2	137	-328	4	328	multi-exon	FALSE	canonical	3	27	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTTATATATACCTTG	NA	False	NA	NA	False	AAGAAA	-5	NA	64042491	64048858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_64042592_64048440
ENSMUSG00000033430.11_0	chr8	+	2214	3	FSM	ENSMUSG00000033430.11	ENSMUST00000052138.11	3560	3	15	1331	11	-1331	multi-exon	FALSE	canonical	3	135	junction_1	1.5	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACAAGCATTTTCTTTGA	NA	False	NA	NA	False	AATAAA	-23	NA	112738044	112745829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_112738775_112741968_112742094_112744470
ENSMUSG00000033430.11_5	chr8	+	1353	1	NIC	ENSMUSG00000033430.11	novel	3560	3	NA	NA	6436	-1338	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTTGTCAACAAGCATTT	NA	False	NA	NA	False	AATAAA	-16	NA	112744469	112745822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_112744500_112745800
ENSMUSG00000033430.11_7	chr8	+	175	1	ISM	ENSMUSG00000033430.11	ENSMUST00000052138.11	3560	3	8872	84	8868	-84	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAAATTCT	NA	False	NA	NA	False	NA	NA	NA	112746901	112747076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_112746900_112747100
ENSMUSG00000033434.16_14	chr5	-	1663	9	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	150	junction_8	32.0497659897853	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGGCCTGGTTTTGTATAG	NA	False	NA	-6	True	ATTAAA	-26	NA	110256025	110251842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925_110255064_110255721
ENSMUSG00000033434.16_16	chr5	-	1976	7	FSM	ENSMUSG00000033434.16	ENSMUST00000127628.6	1481	7	-495	0	14	0	multi-exon	FALSE	canonical	3	206	junction_1	14.1234635349203	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCGGCCTGGTTTTGTAT	NA	False	NA	-8	True	ATTAAA	-24	NA	110255563	110251844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518
ENSMUSG00000033434.16_2	chr5	-	1611	10	FSM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	2	4	2	0	multi-exon	FALSE	canonical	3	93	junction_7	48.631900316511	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCGGCCTGGTTTTGTAT	NA	False	NA	-8	True	ATTAAA	-24	NA	110256061	110251844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255721
ENSMUSG00000033434.16_31	chr5	-	1770	9	ISM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	500	5	14	-1	3prime_fragment	FALSE	canonical	3	93	junction_7	47.9386000525672	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACCGGCCTGGTTTTGTA	NA	False	NA	-9	True	ATTAAA	-23	NA	110255563	110251845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925
ENSMUSG00000033434.16_5	chr5	-	1797	8	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	-14	0	intron_retention	FALSE	canonical	3	150	junction_7	31.16185527997	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGGCCTGGTTTTGTATA	NA	False	NA	-7	True	ATTAAA	-25	NA	110256041	110251843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110255064_110255721
ENSMUSG00000033434.16_6	chr5	-	1858	8	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	14	0	intron_retention	FALSE	canonical	3	179	junction_7	22.3597670755639	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGGCCTGGTTTTGTATA	NA	False	NA	-7	True	ATTAAA	-25	NA	110255563	110251843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925
ENSMUSG00000033436.14_0	chrX	-	3441	6	FSM	ENSMUSG00000033436.14	ENSMUST00000113193.9	3666	6	225	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	6.60302960768767	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTTCTGGTGCTT	NA	False	NA	-3	True	AATAAA	-19	NA	133709745	133704895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133707763_133708010_133708077_133708202_133708263_133708369_133708475_133708983_133709249_133709667
ENSMUSG00000033436.14_2	chrX	-	3414	6	FSM	ENSMUSG00000033436.14	ENSMUST00000035559.11	3384	6	-30	0	-30	0	multi-exon	FALSE	canonical	2	3	junction_5	12.1556571192182	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTTCTGGTGCTT	NA	False	NA	-3	True	AATAAA	-19	NA	133709775	133704895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133707763_133708010_133708077_133708202_133708263_133708369_133708475_133708983_133709192_133709667
ENSMUSG00000033436.14_3	chrX	-	3256	5	ISM	ENSMUSG00000033436.14	ENSMUST00000035559.11	3384	6	604	0	-450	0	3prime_fragment	FALSE	canonical	3	32	junction_1	1.29903810567666	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTTCTGGTGCTT	NA	False	NA	-3	True	AATAAA	-19	NA	133709141	133704895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_133707763_133708010_133708077_133708202_133708263_133708369_133708475_133708983
ENSMUSG00000033436.14_4	chrX	-	1855	1	ISM	ENSMUSG00000033436.14	ENSMUST00000119010.8	3007	3	1524	2	1510	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTTCTGGTGCTT	NA	False	NA	-3	True	AATAAA	-19	NA	133706750	133704895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_133704900_133706800
ENSMUSG00000033436.14_5	chrX	-	3238	4	ISM	ENSMUSG00000033436.14	ENSMUST00000035559.11	3384	6	1131	0	77	0	3prime_fragment	FALSE	canonical	3	32	junction_1	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTTCTGGTGCTT	NA	False	NA	-3	True	AATAAA	-19	NA	133708614	133704895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_133707763_133708010_133708077_133708202_133708263_133708369
ENSMUSG00000033436.14_7	chrX	-	3541	5	FSM	ENSMUSG00000033436.14	ENSMUST00000168264.2	3773	5	225	7	0	-7	multi-exon	FALSE	canonical	3	17	junction_4	6.83282518435822	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGCAAGAAGTTGTTCT	NA	False	NA	-10	True	AATAAA	-12	NA	133709745	133704902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133707763_133708010_133708077_133708202_133708475_133708983_133709249_133709667
ENSMUSG00000033439.13_0	chr3	-	1835	11	ISM	ENSMUSG00000033439.13	ENSMUST00000041524.11	3402	12	19724	8	-3	-6	3prime_fragment	FALSE	canonical	3	87	junction_7	13.8524366087703	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGGATCAATCTGAGTG	NA	False	NA	NA	False	AATAAA	-15	NA	116388512	116374749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ENSMUSG00000033439.13_13	chr3	-	2006	12	NIC	ENSMUSG00000033439.13	novel	3402	12	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	44.0480579022353	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATCTGAGTGTGAGGCT	NA	False	NA	NA	False	AATAAA	-22	NA	116388524	116374742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116384053_116384206_116385841_116385909_116386112_116386160_116388287
ENSMUSG00000033439.13_14	chr3	-	950	2	ISM	ENSMUSG00000033439.13	ENSMUST00000199439.2	865	3	550	-242	550	0	3prime_fragment	FALSE	canonical	3	136	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATCTGAGTGTGAGGCT	NA	False	NA	NA	False	AATAAA	-22	NA	116376575	116374742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_116375260_116376142
ENSMUSG00000033439.13_5	chr3	-	3991	10	NIC	ENSMUSG00000033439.13	novel	1723	11	NA	NA	5	0	intron_retention	FALSE	canonical	2	6	junction_4	37.4373550822645	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATCTGAGTGTGAGGCT	NA	False	NA	NA	False	AATAAA	-22	NA	116388504	116374742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_116375260_116376142_116378920_116379403_116379477_116382120_116382174_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ENSMUSG00000033444.15_0	chr10	+	6036	16	FSM	ENSMUSG00000033444.15	ENSMUST00000218766.2	4725	16	15	-1326	-7	-10	multi-exon	FALSE	canonical	3	164	junction_1	14.4858551697855	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGATTTCCTAGTTTGTTCT	NA	False	NA	28	True	AATAAA	-11	NA	75047919	75148223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_75048052_75066515_75066706_75076898_75077053_75080912_75082547_75084270_75084479_75093701_75093776_75094801_75094978_75097627_75097792_75099112_75099205_75103332_75103424_75109850_75109935_75112604_75112762_75115692_75115796_75143070_75143188_75143867_75143928_75145623
ENSMUSG00000033444.15_21	chr10	+	4693	13	ISM	ENSMUSG00000033444.15	ENSMUST00000040105.8	5928	16	16093	8	-15019	-8	3prime_fragment	FALSE	canonical	3	164	junction_1	14.3185485763514	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCCTAGTTTGTTCTCC	NA	False	NA	30	True	AATAAA	-13	NA	75081781	75148225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_75082547_75084270_75084479_75093701_75093776_75094801_75094978_75097627_75097792_75099112_75099205_75103332_75103424_75109850_75109935_75112604_75112762_75115692_75115796_75143070_75143188_75143867_75143928_75145623
ENSMUSG00000033444.15_29	chr10	+	2230	1	ISM	ENSMUSG00000033444.15	ENSMUST00000105421.10	6632	18	97774	352	6542	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCCTAGTTTGTTCTCC	NA	False	NA	30	True	AATAAA	-13	NA	75145995	75148225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_75146000_75148200
ENSMUSG00000033446.8_0	chr14	+	1780	1	FSM	ENSMUSG00000033446.8	ENSMUST00000044405.8	5400	1	107	3513	107	-3513	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGCCATTTTACTTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	73475441	73477221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_73475400_73477200
ENSMUSG00000033450.9_1	chr17	+	1502	1	ISM	ENSMUSG00000033450.9	ENSMUST00000036370.8	3076	10	7334	62	6399	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTTATTACTTGCTGAT	NA	False	NA	NA	False	AATAAA	-18	NA	8152165	8153667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_8152200_8153700
ENSMUSG00000033453.9_0	chr9	-	6049	8	FSM	ENSMUSG00000033453.9	ENSMUST00000065112.7	5928	8	-123	2	-123	-2	multi-exon	FALSE	canonical	1	3	junction_2	0.989743318610787	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATCTTGTGTCTGTCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	30833871	30810452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_30814086_30815776_30815953_30816055_30816238_30817356_30817535_30821893_30822178_30822405_30822574_30822976_30823110_30832576
ENSMUSG00000033454.7_0	chr12	+	3430	2	FSM	ENSMUSG00000033454.7	ENSMUST00000042779.4	12190	2	256	8504	256	-8504	multi-exon	FALSE	canonical	3	110	junction_1	0	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATAAATCTGGTTGTTC	NA	False	NA	NA	False	AATAAA	-12	NA	76417295	76435220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_76417505_76431999
ENSMUSG00000033454.7_5	chr12	+	3363	2	NNC	ENSMUSG00000033454.7	novel	12190	2	NA	NA	841	-8500	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATCTGGTTGTTCTATA	261	False	NA	NA	False	AATAAA	-16	NA	76417880	76435224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_76418019_76431999
ENSMUSG00000033454.7_8	chr12	+	1911	1	ISM	ENSMUSG00000033454.7	ENSMUST00000042779.4	12190	2	16256	8518	16256	-8518	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAGAAATCAATTAT	NA	False	NA	NA	False	GATAAA	-7	NA	76433295	76435206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76433300_76435200
ENSMUSG00000033458.18_16	chr7	-	3746	2	NIC	ENSMUSG00000033458.18	novel	3162	3	NA	NA	2	0	intron_retention	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	64023826	64019900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_64023503_64023682
ENSMUSG00000033460.15_0	chrX	+	2089	4	NNC	ENSMUSG00000033460.15	novel	2085	4	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	canonical	3	112	junction_3	34.8839345385363	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGGAAAAAAAGCACTGT	NA	False	NA	NA	False	AATAAA	-14	NA	133618712	133622653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_133618800_133619668_133619742_133620375_133620475_133620823
ENSMUSG00000033460.15_2	chrX	+	2182	5	NNC	ENSMUSG00000033460.15	novel	2228	5	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	54.8925085963467	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAAAAAAGCACTGTCT	NA	False	NA	NA	False	AATAAA	-16	NA	133618714	133622655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_133618800_133619474_133619568_133619668_133619742_133620375_133620475_133620823
ENSMUSG00000033460.15_3	chrX	+	2123	4	FSM	ENSMUSG00000033460.15	ENSMUST00000113198.8	2085	4	-42	4	1	-4	multi-exon	FALSE	canonical	3	131	junction_3	26.0895892391327	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGGAAAAAAAGCACTGT	NA	False	NA	NA	False	AATAAA	-14	NA	133618719	133622653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_133618800_133619668_133619742_133620375_133620475_133620782
ENSMUSG00000033460.15_34	chrX	+	1398	1	ISM	ENSMUSG00000033460.15	ENSMUST00000113201.8	2228	5	2546	2	1252	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAAAAAAGCACTGTCT	NA	False	NA	NA	False	AATAAA	-16	NA	133621257	133622655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_133621300_133622700
ENSMUSG00000033460.15_6	chrX	+	2231	4	FSM	ENSMUSG00000033460.15	ENSMUST00000051256.10	2253	4	9	13	-9	-4	multi-exon	FALSE	canonical	3	48	junction_2	53.7463177033243	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGGAAAAAAAGCACTGT	NA	False	NA	NA	False	AATAAA	-14	NA	133618727	133622653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_133618800_133619668_133619858_133620375_133620475_133620782
ENSMUSG00000033467.13_0	chr5	-	507	3	ISM	ENSMUSG00000033467.13	ENSMUST00000198960.2	812	5	905	-4	905	2	3prime_fragment	FALSE	canonical	3	516	junction_2	49.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCGGCCAGCCATCATTA	NA	False	NA	-9	True	NA	NA	NA	109703434	109702576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_109702937_109703138_109703224_109703372
ENSMUSG00000033467.13_1	chr5	-	1243	7	ISM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	1215	2	1215	2	3prime_fragment	FALSE	canonical	1	48	junction_6	234.65719677862	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCGGCCAGCCATCATTA	NA	False	NA	-9	True	NA	NA	NA	109705587	109702576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383
ENSMUSG00000033467.13_2	chr5	-	738	4	NIC	ENSMUSG00000033467.13	novel	812	5	NA	NA	-76	2	combination_of_known_splicesites	FALSE	canonical	1	50	junction_3	264.478102433201	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCGGCCAGCCATCATTA	NA	False	NA	-9	True	NA	NA	NA	109704415	109702576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_109702937_109703138_109703224_109703884_109704048_109704285
ENSMUSG00000033467.13_20	chr5	-	195	1	ISM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	4026	7	1563	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTAATGCGGCCAGCCAT	NA	False	NA	-14	True	NA	NA	NA	109702776	109702581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_109702600_109702800
ENSMUSG00000033467.13_3	chr5	-	1007	5	ISM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	2238	3	-225	1	3prime_fragment	FALSE	canonical	1	50	junction_4	239.958720408324	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGCGGCCAGCCATCATT	NA	False	NA	-10	True	NA	NA	NA	109704564	109702577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285
ENSMUSG00000033467.13_4	chr5	-	1041	5	FSM	ENSMUSG00000033467.13	ENSMUST00000198960.2	812	5	-225	-4	-225	2	multi-exon	FALSE	canonical	1	13	junction_3	269.602021505774	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCGGCCAGCCATCATTA	NA	False	NA	-9	True	NA	NA	NA	109704564	109702576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_109702937_109703138_109703224_109703372_109703527_109703884_109704048_109704285
ENSMUSG00000033467.13_5	chr5	-	601	2	ISM	ENSMUSG00000033467.13	ENSMUST00000198960.2	812	5	959	-3	959	1	intron_retention	FALSE	canonical	3	615	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGCGGCCAGCCATCATT	NA	False	NA	-10	True	NA	NA	NA	109703380	109702577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_109702937_109703138
ENSMUSG00000033467.13_7	chr5	-	1351	8	FSM	ENSMUSG00000033467.13	ENSMUST00000044579.12	1323	8	-26	-2	-26	2	multi-exon	FALSE	canonical	1	25	junction_7	229.794229159703	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCGGCCAGCCATCATTA	NA	False	NA	-9	True	NA	NA	NA	109706885	109702576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705481_109706670
ENSMUSG00000033467.13_8	chr5	-	1451	8	FSM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	-48	2	9	2	multi-exon	FALSE	canonical	1	3	junction_7	232.416937104552	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCGGCCAGCCATCATTA	NA	False	NA	-9	True	NA	NA	NA	109706850	109702576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705616_109706670
ENSMUSG00000033467.13_9	chr5	-	733	4	ISM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	2751	2	288	2	3prime_fragment	FALSE	canonical	3	140	junction_3	204.613999738261	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCGGCCAGCCATCATTA	NA	False	NA	-9	True	NA	NA	NA	109704051	109702576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884
ENSMUSG00000033475.16_0	chr17	-	563	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113301.2	594	3	27	4	27	-4	multi-exon	FALSE	canonical	3	227	junction_1	2129.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGACAGGTATTTTATTC	NA	False	NA	-16	True	AATAAA	-11	NA	47998966	47997668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47997988_47998112_47998214_47998823
ENSMUSG00000033475.16_1	chr17	-	347	2	ISM	ENSMUSG00000033475.16	ENSMUST00000113302.10	749	3	914	98	799	-4	3prime_fragment	FALSE	canonical	3	3748	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGACAGGTATTTTATTC	NA	False	NA	-16	True	AATAAA	-11	NA	47998194	47997668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_47997934_47998112
ENSMUSG00000033475.16_2	chr17	-	268	1	NIC	ENSMUSG00000033475.16	novel	749	3	NA	NA	1057	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGACAGGTATTTTATTC	NA	False	NA	-16	True	AATAAA	-11	NA	47997936	47997668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_47997700_47997900
ENSMUSG00000033478.6_1	chr19	+	5579	17	FSM	ENSMUSG00000033478.6	ENSMUST00000036407.6	5951	17	367	5	17	-5	multi-exon	FALSE	canonical	3	86	junction_15	12.0260134708057	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTAAACAGAACATTGTC	NA	False	NA	-3	True	AATAAA	-8	NA	57349478	57378013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_57349803_57356955_57357035_57359585_57359756_57361371_57361477_57361711_57361835_57366980_57367275_57367410_57367608_57369031_57369147_57369503_57369581_57369663_57369857_57370155_57370326_57370650_57370792_57371598_57371690_57372551_57372696_57373685_57373827_57374711_57374816_57374902
ENSMUSG00000033478.6_26	chr19	+	2188	1	ISM	ENSMUSG00000033478.6	ENSMUST00000036407.6	5951	17	26714	5	26364	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTAAACAGAACATTGTC	NA	False	NA	-3	True	AATAAA	-8	NA	57375825	57378013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_57375800_57378000
ENSMUSG00000033486.15_18	chr2	-	2400	9	NIC	ENSMUSG00000033486.15	novel	2247	13	NA	NA	34	10	intron_retention	FALSE	canonical	2	2	junction_4	5.57757787933078	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCAAGTTTTTTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	121244239	121224825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121224969_121227433_121227602_121227941_121228370_121236809_121236935_121237187_121237997_121240618_121240688_121240857_121241032_121242630_121242772_121243896
ENSMUSG00000033486.15_21	chr2	-	1450	8	ISM	ENSMUSG00000033486.15	ENSMUST00000154604.8	2293	9	-119	1724	64	0	5prime_fragment	FALSE	canonical	1	1	junction_4	5.84842556870249	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTGGTAAGTTCAAGT	NA	False	NA	NA	False	AATAAA	-14	NA	121244209	121224835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121224969_121227433_121227602_121227941_121228370_121229926_121229951_121240618_121240688_121240857_121241032_121242630_121242772_121243896
ENSMUSG00000033486.15_7	chr2	-	1545	7	NIC	ENSMUSG00000033486.15	novel	2247	13	NA	NA	-5	-4	combination_of_known_splicesites	FALSE	canonical	3	4	junction_4	5.52016505389306	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAATATTTCTGGTAAGT	NA	False	NA	NA	False	AATAAA	-8	NA	121244278	121224841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121224969_121227433_121227602_121227941_121228370_121236809_121236935_121240857_121241032_121242630_121242772_121243896
ENSMUSG00000033486.15_8	chr2	-	1622	9	NIC	ENSMUSG00000033486.15	novel	2247	13	NA	NA	1	9	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	6.51800391224184	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTCAAGTTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-23	NA	121244272	121224826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121224969_121227433_121227602_121227941_121228370_121229926_121229951_121230217_121230318_121240618_121240688_121240857_121241032_121242630_121242772_121243896
ENSMUSG00000033486.15_9	chr2	-	1881	10	NIC	ENSMUSG00000033486.15	novel	2247	13	NA	NA	57	-4	combination_of_known_splicesites	FALSE	canonical	2	2	junction_4	5.71547606649408	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAATATTTCTGGTAAGT	NA	False	NA	NA	False	AATAAA	-8	NA	121244216	121224841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121224969_121227433_121227602_121227941_121228370_121236809_121236935_121237187_121237344_121237823_121237997_121240618_121240688_121240857_121241032_121242630_121242772_121243896
ENSMUSG00000033487.15_1	chr14	-	6138	26	FSM	ENSMUSG00000033487.15	ENSMUST00000089017.12	6143	26	1	4	1	-4	multi-exon	FALSE	canonical	3	104	junction_25	24.1979833870511	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATATGTTTTTTGTATTT	NA	False	NA	-5	True	AATAAA	-20	NA	72947442	72775389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72921073_72921212_72947157
ENSMUSG00000033487.15_2	chr14	-	2014	1	ISM	ENSMUSG00000033487.15	ENSMUST00000089017.12	6143	26	170040	4	24755	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATATGTTTTTTGTATTT	NA	False	NA	-5	True	AATAAA	-20	NA	72777403	72775389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_72775400_72777400
ENSMUSG00000033487.15_3	chr14	-	5987	26	NNC	ENSMUSG00000033487.15	novel	6143	26	NA	NA	-688	-4	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_25	35.8196817406297	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATATGTTTTTTGTATTT	NA	False	NA	-5	True	AATAAA	-20	NA	72948131	72775389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72921073_72921212_72947997
ENSMUSG00000033487.15_7	chr14	-	6004	25	NIC	ENSMUSG00000033487.15	novel	6143	26	NA	NA	-4	-5	combination_of_known_splicesites	FALSE	canonical	1	4	junction_24	38.9581105162969	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATATGTTTTTTGTATT	NA	False	NA	-6	True	AATAAA	-19	NA	72947447	72775390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72947157
ENSMUSG00000033487.15_9	chr14	-	5708	24	FSM	ENSMUSG00000033487.15	ENSMUST00000162825.8	4100	24	-27	-1581	-27	-3	multi-exon	FALSE	canonical	3	32	junction_23	34.1903931941048	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATGTTTTTTGTATTTA	7118	False	NA	-4	True	AATAAA	-21	NA	72840429	72775388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72840361
ENSMUSG00000033488.12_0	chr1	+	1618	10	FSM	ENSMUSG00000033488.12	ENSMUST00000046743.11	1618	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_7	9.08125188520113	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157286149	157316630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157298185_157298368_157299757_157299987_157316012
ENSMUSG00000033488.12_1	chr1	+	1213	8	FSM	ENSMUSG00000033488.12	ENSMUST00000193791.6	778	8	-3	-432	-3	0	multi-exon	FALSE	canonical	1	1	junction_7	18.9725903258746	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157286143	157316630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157316012
ENSMUSG00000033488.12_5	chr1	+	1122	7	FSM	ENSMUSG00000033488.12	ENSMUST00000119891.7	1125	7	3	0	3	0	multi-exon	FALSE	canonical	1	3	junction_6	19.7624784770422	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157286152	157316630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157316012
ENSMUSG00000033488.12_8	chr1	+	1445	8	ISM	ENSMUSG00000033488.12	ENSMUST00000046743.11	1618	10	3371	0	-1	0	3prime_fragment	FALSE	canonical	3	36	junction_5	7.8141681892442	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157289520	157316630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157298185_157298368_157299757_157299987_157316012
ENSMUSG00000033488.12_9	chr1	+	656	2	ISM	ENSMUSG00000033488.12	ENSMUST00000194220.2	1202	4	105	3584	105	-6	5prime_fragment	FALSE	canonical	3	43	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAACTTGCTTCTTGG	NA	False	NA	8	True	NA	NA	NA	157299942	157316624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_157299987_157316012
ENSMUSG00000033491.14_3	chr9	+	3408	2	FSM	ENSMUSG00000033491.14	ENSMUST00000036426.13	3444	2	0	36	0	-36	multi-exon	FALSE	canonical	3	21	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAATTCAATAAAAC	NA	False	NA	-32	True	NA	NA	NA	86625701	86640460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_86625860_86637210
ENSMUSG00000033491.14_6	chr9	+	2586	1	ISM	ENSMUSG00000033491.14	ENSMUST00000036426.13	3444	2	12194	15	12194	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAATAAAAAGTATCACT	NA	False	NA	-11	True	AATAAA	-4	NA	86637895	86640481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_86637900_86640500
ENSMUSG00000033499.15_2	chr13	+	5746	17	FSM	ENSMUSG00000033499.15	ENSMUST00000091829.4	5720	17	-75	49	0	-49	multi-exon	FALSE	canonical	0	0	junction_12	76.8002431229876	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTTTTCTTTTGATTCT	NA	False	NA	15	True	AATAAA	-15	NA	9143942	9224438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_9144217_9172143_9172263_9173938_9173999_9186814_9186963_9187190_9187338_9193789_9193869_9195417_9195555_9197436_9197541_9199861_9199973_9200900_9200955_9201050_9201261_9208158_9208266_9214710_9214757_9216352_9216518_9218713_9218839_9218933_9219043_9220687
ENSMUSG00000033499.15_3	chr13	+	5995	18	FSM	ENSMUSG00000033499.15	ENSMUST00000188211.8	5610	18	26	-411	0	-52	multi-exon	FALSE	canonical	0	0	junction_12	74.6898546956926	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCAATTTTTCTTTTGAT	NA	False	NA	12	True	AATAAA	-12	NA	9143942	9224435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_9144217_9172143_9172263_9173938_9173999_9186814_9186963_9187190_9187338_9193789_9193869_9195417_9195555_9197436_9197541_9199861_9199973_9200900_9200955_9201050_9201261_9208158_9208266_9208586_9208839_9214710_9214757_9216352_9216518_9218713_9218839_9218933_9219043_9220687
ENSMUSG00000033499.15_66	chr13	+	2912	1	ISM	ENSMUSG00000033499.15	ENSMUST00000091829.4	5720	17	77510	48	3131	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTTCTTTTGATTCTT	NA	False	NA	16	True	AATAAA	-16	NA	9221527	9224439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_9221500_9224400
ENSMUSG00000033502.16_0	chr3	-	4451	16	FSM	ENSMUSG00000033502.16	ENSMUST00000090464.7	4485	16	28	6	-18	-6	multi-exon	FALSE	canonical	2	9	junction_7	3.61232458243842	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTCCTGGGCATTCA	NA	False	NA	NA	False	AATAAA	-15	NA	116217653	116066207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_116068358_116087374_116087736_116088399_116088523_116090779_116090828_116092085_116092199_116101788_116101949_116115730_116115870_116122127_116122359_116126443_116126532_116142102_116142166_116144854_116144922_116160275_116160356_116186470_116186564_116198191_116198268_116216215_116216307_116217085
ENSMUSG00000033502.16_5	chr3	-	1146	4	FSM	ENSMUSG00000033502.16	ENSMUST00000136994.2	863	4	-58	-225	33	225	multi-exon	FALSE	canonical	1	3	junction_1	7.25718035235908	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATATTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	116217602	116197531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_116197994_116198191_116198268_116216215_116216307_116217085
ENSMUSG00000033508.9_1	chr6	+	1513	1	FSM	ENSMUSG00000033508.9	ENSMUST00000043400.9	1547	1	22	12	22	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGAAAAAAAATGTCATGT	NA	False	NA	NA	False	AATAAA	-10	NA	86605167	86606680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86605200_86606700
ENSMUSG00000033510.15_0	chr7	+	3505	14	NIC	ENSMUSG00000033510.15	novel	3483	14	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_10	2.1973625933978	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGGAGTGTTTTACATG	NA	False	NA	NA	False	AATAAA	-24	NA	63094496	63408775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_63094676_63265036_63265167_63299356_63299451_63300558_63300714_63335116_63335300_63346758_63346981_63377165_63377268_63378809_63378938_63379540_63379657_63383411_63383540_63385546_63385697_63404379_63404495_63404663_63404749_63407057
ENSMUSG00000033526.17_0	chr2	-	5555	31	NIC	ENSMUSG00000033526.17	novel	5171	30	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	3	47	junction_6	18.7459328922303	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGAGGGGGTGTGACTC	NA	False	NA	-9	True	AATAAA	-13	NA	121185809	121141045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121142964_121147135_121147250_121152135_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
ENSMUSG00000033526.17_11	chr2	-	5704	32	NIC	ENSMUSG00000033526.17	novel	5171	30	NA	NA	3	-4	combination_of_known_junctions	FALSE	canonical	3	48	junction_7	19.1421648876737	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGAGGGGGTGTGACTC	NA	False	NA	-9	True	AATAAA	-13	NA	121185808	121141045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121142964_121147135_121147250_121152135_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121162722_121162873_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
ENSMUSG00000033526.17_12	chr2	-	5509	31	NIC	ENSMUSG00000033526.17	novel	5171	30	NA	NA	6	-22	combination_of_known_junctions	FALSE	canonical	3	16	junction_10	22.0581050863396	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAACACAAAATAATGAG	NA	False	NA	-27	True	NA	NA	NA	121185805	121141063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121142964_121147135_121147250_121152135_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167587_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
ENSMUSG00000033526.17_16	chr2	-	5678	31	NIC	ENSMUSG00000033526.17	novel	5171	30	NA	NA	3	-4	combination_of_known_junctions	TRUE	canonical	3	48	junction_7	18.7846272846235	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGAGGGGGTGTGACTC	NA	False	NA	-9	True	AATAAA	-13	NA	121181495	121141045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121142964_121147135_121147250_121152135_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121162722_121162873_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397
ENSMUSG00000033526.17_3	chr2	-	1061	1	ISM	ENSMUSG00000033526.17	ENSMUST00000052029.10	5533	30	39381	15	22868	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAATAATGAGAACGAGG	NA	False	NA	-20	True	AATAAA	-2	NA	121142117	121141056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121141100_121142100
ENSMUSG00000033526.17_42	chr2	-	1421	10	ISM	ENSMUSG00000033526.17	ENSMUST00000150081.8	2485	18	-22	6704	0	-14	5prime_fragment	FALSE	canonical	3	56	junction_9	18.8017598335769	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTAAAAGTTTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	121185814	121177542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
ENSMUSG00000033530.9_1	chr12	-	3434	20	FSM	ENSMUSG00000033530.9	ENSMUST00000062957.8	3446	20	5	7	1	-7	multi-exon	FALSE	canonical	3	208	junction_10	15.649378488982	539	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGACCCCTGGCTTTTG	NA	False	NA	-8	True	AATAAA	-14	NA	100487080	100267035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_100268030_100291802_100292006_100298837_100298979_100314194_100314293_100321261_100321379_100339802_100339964_100342434_100342508_100348379_100348438_100350405_100350524_100352114_100352220_100353369_100353454_100369615_100369754_100373258_100373323_100381393_100381567_100385750_100385830_100413118_100413241_100432438_100432570_100461530_100461700_100466334_100466490_100486829
ENSMUSG00000033540.19_0	chr5	+	3171	14	FSM	ENSMUSG00000033540.19	ENSMUST00000112563.9	3373	14	195	7	6	-2	multi-exon	FALSE	canonical	2	36	junction_11	7.1294040681437	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATTACCTGGCCTCCCA	NA	False	NA	10	True	NA	NA	NA	108817166	108832416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_108817384_108817984_108818126_108827364_108827451_108827569_108827678_108827976_108828073_108828160_108828364_108828436_108828617_108828726_108828944_108829245_108829459_108829537_108829660_108829767_108829894_108829965_108830043_108830918_108831020_108831132
ENSMUSG00000033540.19_17	chr5	+	3961	18	Fusion	ENSMUSG00000008090.15_ENSMUSG00000033540.19	novel	3536	15	NA	NA	10	-8	multi-exon	FALSE	canonical	0	0	junction_13	29.6186839003045	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTGTTAAACAAGAAATT	NA	False	NA	-4	True	NA	NA	NA	108817186	108854782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr5_+_108817384_108817984_108818126_108827364_108827451_108827569_108827678_108827976_108828073_108828160_108828364_108828436_108828617_108828726_108828944_108829245_108829459_108829537_108829660_108829767_108829894_108829965_108830043_108830918_108831020_108851151_108851425_108852532_108852614_108852720_108853006_108853084_108853439_108853681
ENSMUSG00000033540.19_19	chr5	+	3076	14	NIC	ENSMUSG00000033540.19	novel	3373	14	NA	NA	5	2	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	14.961489025032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACCTGGCCTCCCAAGTC	NA	False	NA	14	True	NA	NA	NA	108817165	108832420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_108817384_108817984_108818126_108827364_108827451_108827569_108827678_108827976_108828073_108828260_108828364_108828436_108828617_108828726_108828944_108829245_108829459_108829537_108829660_108829767_108829894_108829965_108830043_108830918_108831020_108831132
ENSMUSG00000033540.19_5	chr5	+	3265	13	NIC	ENSMUSG00000033540.19	novel	3373	14	NA	NA	4	2	intron_retention	FALSE	canonical	2	36	junction_10	7.17441441667696	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACCTGGCCTCCCAAGTC	NA	False	NA	14	True	NA	NA	NA	108817164	108832420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_108817384_108817984_108818126_108827364_108827451_108827569_108827678_108827976_108828364_108828436_108828617_108828726_108828944_108829245_108829459_108829537_108829660_108829767_108829894_108829965_108830043_108830918_108831020_108831132
ENSMUSG00000033542.14_0	chr6	+	5401	15	FSM	ENSMUSG00000033542.14	ENSMUST00000031750.14	5469	15	63	5	63	0	multi-exon	TRUE	canonical	0	0	junction_11	2.0861545523586	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGTTTTCTTCTCAGGTT	6887	False	NA	NA	False	AATAAA	-15	NA	43242578	43266249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_43242678_43249238_43252360_43252873_43252932_43253470_43253533_43253737_43253992_43256376_43256538_43257094_43257248_43257531_43257662_43257884_43257960_43258356_43258447_43260107_43260266_43260826_43260989_43262292_43262364_43264473_43264579_43265547
ENSMUSG00000033543.18_0	chr9	+	741	5	FSM	ENSMUSG00000033543.18	ENSMUST00000118198.8	893	5	23	129	-1	0	multi-exon	FALSE	canonical	3	697	junction_3	95.7131129992124	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAGTAATACTTGAT	NA	False	NA	17	True	AATAAA	-15	NA	69919854	69930019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69926670_69926798_69929718
ENSMUSG00000033543.18_1	chr9	+	912	6	NIC	ENSMUSG00000033543.18	novel	833	7	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	21	junction_2	366.992098007573	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGTTGTGAGTAATACTT	NA	False	NA	14	True	AATAAA	-12	NA	69919850	69930016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924206_69926670_69926798_69929718
ENSMUSG00000033543.18_14	chr9	+	2293	2	FSM	ENSMUSG00000033543.18	ENSMUST00000148889.2	769	2	-1530	6	699	-6	multi-exon	FALSE	canonical	3	729	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTGTTGTGAGTAATA	NA	False	NA	11	True	AATAAA	-9	NA	69924799	69930013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_69926798_69929718
ENSMUSG00000033543.18_2	chr9	+	3209	4	NIC	ENSMUSG00000033543.18	novel	1199	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	729	junction_3	82.0893821798329	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919852	69930020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_69919944_69922573_69922693_69924100_69926798_69929718
ENSMUSG00000033543.18_4	chr9	+	997	5	NIC	ENSMUSG00000033543.18	novel	1199	6	NA	NA	0	-6	intron_retention	FALSE	canonical	3	38	junction_3	356.599477705731	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTGTTGTGAGTAATA	NA	False	NA	11	True	AATAAA	-9	NA	69919860	69930013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_69919944_69922573_69922693_69924100_69924474_69926670_69926798_69929718
ENSMUSG00000033545.15_2	chr8	+	2719	4	FSM	ENSMUSG00000033545.15	ENSMUST00000095176.12	3108	4	-322	711	-120	94	multi-exon	FALSE	canonical	3	106	junction_3	7.78888096369861	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGTCTTGTGTCGACT	NA	False	NA	7	True	AAAAAG	-27	NA	112263151	112349699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_112264197_112335924_112336021_112345837_112345944_112348227
ENSMUSG00000033545.15_3	chr8	+	2845	5	ISM	ENSMUSG00000033545.15	ENSMUST00000174376.8	501	6	-991	-566	-144	94	intron_retention	FALSE	canonical	1	3	junction_1	52.1200537221519	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGTCTTGTGTCGACT	NA	False	NA	7	True	AAAAAG	-27	NA	112263127	112349699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_112264197_112333378_112333481_112335924_112336021_112345837_112345944_112348227
ENSMUSG00000033545.15_4	chr8	+	1935	5	FSM	ENSMUSG00000033545.15	ENSMUST00000173506.8	1238	5	-603	-94	-123	94	multi-exon	FALSE	canonical	3	66	junction_4	22.2640405137971	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGTCTTGTGTCGACT	NA	False	NA	7	True	AAAAAG	-27	NA	112263148	112349699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_112264197_112335924_112336021_112345837_112345944_112348227_112348320_112349106
ENSMUSG00000033545.15_5	chr8	+	1605	5	FSM	ENSMUSG00000033545.15	ENSMUST00000168428.8	4451	5	-117	2963	-117	94	multi-exon	FALSE	canonical	3	40	junction_4	33.169074451965	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGTCTTGTGTCGACT	NA	False	NA	7	True	AAAAAG	-27	NA	112263154	112349699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_112264197_112335924_112336021_112345837_112345944_112348227_112348320_112349430
ENSMUSG00000033554.18_0	chr3	+	1341	8	FSM	ENSMUSG00000033554.18	ENSMUST00000043342.10	1576	8	-10	245	0	-1	multi-exon	FALSE	canonical	3	254	junction_6	12.9331089117215	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATTGTTTTATAATCTC	7748	False	NA	7	True	AATAAA	-17	NA	115681821	115722736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
ENSMUSG00000033554.18_14	chr3	+	289	1	ISM	ENSMUSG00000033554.18	ENSMUST00000189799.7	1558	8	40962	1	40604	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATTGTTTTATAATCTC	7283	False	NA	7	True	AATAAA	-17	NA	115722447	115722736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_115722400_115722700
ENSMUSG00000033554.18_2	chr3	+	1257	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	90.812220405626	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATTGTTTTATAATCTC	7757	False	NA	7	True	AATAAA	-17	NA	115681830	115722736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722405_115722479
ENSMUSG00000033557.18_0	chr1	-	4475	9	FSM	ENSMUSG00000033557.18	ENSMUST00000122424.8	4532	9	37	20	37	19	multi-exon	FALSE	canonical	3	105	junction_8	37.6710681425414	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATATATATTATTGTATAA	NA	False	NA	NA	False	AATAAA	-7	NA	156546605	156506121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156509213_156513760_156513821_156514925_156515118_156518046_156518219_156526296_156526407_156529968_156530056_156533237_156533738_156544457_156544551_156546435
ENSMUSG00000033557.18_1	chr1	-	4123	7	ISM	ENSMUSG00000033557.18	ENSMUST00000122424.8	4532	9	12995	19	-2283	-19	3prime_fragment	TRUE	canonical	3	150	junction_2	21.8835300828931	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATATATTATTGTATAAT	NA	False	NA	NA	False	AATAAA	-8	NA	156533647	156506120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_156509213_156513760_156513821_156514925_156515118_156518046_156518219_156526296_156526407_156529968_156530056_156533237
ENSMUSG00000033557.18_2	chr1	-	4402	8	FSM	ENSMUSG00000033557.18	ENSMUST00000086153.8	4414	8	32	-20	18	-19	multi-exon	FALSE	canonical	3	86	junction_7	39.1298205610869	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATATATTATTGTATAAT	NA	False	NA	NA	False	AATAAA	-8	NA	156546624	156506120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156509213_156513760_156513821_156514925_156515118_156518046_156518219_156526296_156526407_156529968_156530056_156533237_156533738_156546435
ENSMUSG00000033557.18_5	chr1	-	2260	1	ISM	ENSMUSG00000033557.18	ENSMUST00000122424.8	4532	9	38247	34	18060	5	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAAGATTTTAATAT	NA	False	NA	NA	False	NA	NA	NA	156508395	156506135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_156506100_156508400
ENSMUSG00000033565.19_0	chr15	-	3259	1	ISM	ENSMUSG00000033565.19	ENSMUST00000171751.10	6907	14	224672	8	3899	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACCACCCCTGGCGTTT	NA	False	NA	-15	True	AATAAA	-7	NA	76966456	76963197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_76963200_76966500
ENSMUSG00000033565.19_1	chr15	-	3221	13	NIC	ENSMUSG00000033565.19	novel	1694	13	NA	NA	-49	1150	combination_of_known_junctions	FALSE	canonical	3	44	junction_12	44.7278033094505	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGCATCCTTTTGTAAG	NA	False	NA	-1	True	ATTAAA	-20	NA	77190854	76966538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77190563
ENSMUSG00000033565.19_10	chr15	-	6020	10	ISM	ENSMUSG00000033565.19	ENSMUST00000166610.8	6573	13	40032	20	19000	-20	3prime_fragment	FALSE	non_canonical	0	0	junction_5	61.4740736277909	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAGAGAGAAACACC	NA	False	NA	-28	True	AATGAA	-12	NA	76997980	76963210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982285_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804
ENSMUSG00000033565.19_15	chr15	-	3193	13	FSM	ENSMUSG00000033565.19	ENSMUST00000166610.8	6573	13	26	3354	0	1144	multi-exon	FALSE	non_canonical	0	0	junction_5	66.7536931978715	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGCATCAAGCATCCTTT	NA	False	NA	-7	True	ATTAAA	-14	NA	77037986	76966544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982285_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77037729
ENSMUSG00000033565.19_2	chr15	-	3253	14	FSM	ENSMUSG00000033565.19	ENSMUST00000171751.10	6907	14	305	3349	-18	1150	multi-exon	FALSE	non_canonical	0	0	junction_5	54.7017734965571	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGCATCCTTTTGTAAG	NA	False	NA	-1	True	ATTAAA	-20	NA	77190823	76966538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982285_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77115586_77115638_77190563
ENSMUSG00000033565.19_22	chr15	-	3143	13	NIC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	41	1150	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_5	63.47369315096	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGCATCCTTTTGTAAG	NA	False	NA	-1	True	ATTAAA	-20	NA	77190764	76966538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982285_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77190563
ENSMUSG00000033565.19_3	chr15	-	6012	10	ISM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	39974	-4793	19000	-16	3prime_fragment	FALSE	canonical	3	120	junction_5	25.9591321736663	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAGAGAAACACCACCC	NA	False	NA	-24	True	AATGAA	-16	NA	76997980	76963206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804
ENSMUSG00000033565.19_32	chr15	-	6573	14	NIC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	-5	-12	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_5	64.6336970387692	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAAACACCACCCCTGG	NA	False	NA	-20	True	AATAAA	-2	NA	77190810	76963202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982285_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001265_77016916_77017142_77115586_77115638_77190563
ENSMUSG00000033565.19_35	chr15	-	3174	13	FSM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	-19	-1461	13	1150	multi-exon	FALSE	canonical	2	23	junction_12	49.6258221314491	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGCATCCTTTTGTAAG	NA	False	NA	-1	True	ATTAAA	-20	NA	77037973	76966538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77037729
ENSMUSG00000033565.19_4	chr15	-	3235	14	NIC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	-12	1150	combination_of_known_junctions	FALSE	canonical	3	116	junction_12	32.8971860813506	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGCATCCTTTTGTAAG	NA	False	NA	-1	True	ATTAAA	-20	NA	77190817	76966538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77115586_77115638_77190563
ENSMUSG00000033576.13_0	chr15	+	2838	2	ISM	ENSMUSG00000033576.13	ENSMUST00000149569.9	2314	5	4547	0	-2928	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTCTTGACTACAGGGCT	NA	False	NA	NA	False	AATAAA	-15	NA	76934022	76941306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76935606_76940051
ENSMUSG00000033577.19_0	chr9	+	5515	32	NIC	ENSMUSG00000033577.19	novel	7871	33	NA	NA	-9	789	combination_of_known_junctions	FALSE	canonical	3	51	junction_13	8.67484072490656	127	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCGCTCACTTTTGATTGG	4845	False	NA	17	True	AATAAA	-20	NA	80072303	80216673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_80072512_80124897_80125040_80128299_80128370_80133473_80133548_80136139_80136270_80149446_80149553_80152416_80152473_80152921_80153020_80153676_80153842_80159048_80159130_80162161_80162343_80165694_80165840_80168060_80168219_80169555_80169648_80171473_80171547_80173407_80173536_80176908_80177005_80177275_80177450_80181204_80181244_80183589_80183684_80188742_80188874_80188964_80189043_80190736_80190867_80193012_80193104_80193563_80193715_80195289_80195499_80197147_80197227_80199638_80199800_80206427_80206532_80207816_80207949_80214241_80214461_80214953
ENSMUSG00000033577.19_2	chr9	+	5556	33	NIC	ENSMUSG00000033577.19	novel	7927	35	NA	NA	-10	790	combination_of_known_junctions	TRUE	canonical	3	6	junction_28	17.6442437054553	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGCTCACTTTTGATTGGT	4844	False	NA	18	True	AATAAA	-21	NA	80072302	80216674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_80072512_80124897_80125040_80128299_80128370_80133473_80133548_80136139_80136270_80149446_80149553_80152416_80152473_80152921_80153020_80153676_80153842_80159048_80159130_80162161_80162343_80165694_80165840_80168060_80168219_80169555_80169648_80171473_80171547_80173407_80173536_80176908_80177005_80177275_80177450_80181204_80181244_80183589_80183684_80188742_80188874_80188964_80189043_80190736_80190867_80193012_80193104_80193563_80193715_80195289_80195499_80197147_80197227_80199638_80199800_80203924_80203964_80206427_80206532_80207816_80207949_80214241_80214461_80214953
ENSMUSG00000033578.8_0	chrX	+	1751	2	FSM	ENSMUSG00000033578.8	ENSMUST00000037687.8	1918	2	166	1	166	-1	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACATGGTGTGGATATGG	NA	False	NA	5	True	AATAAA	-17	NA	133196139	133206717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_133196379_133205205
ENSMUSG00000033579.17_0	chr8	-	2481	7	FSM	ENSMUSG00000033579.17	ENSMUST00000038475.9	2492	7	6	5	0	-5	multi-exon	FALSE	canonical	0	0	junction_1	0.74535599249993	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAGCAAAGACCCATTG	NA	False	NA	NA	False	AATAAA	-45	NA	112120450	112071777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_112073154_112074562_112074816_112075835_112076009_112082031_112082139_112082709_112082853_112093025_112093119_112120114
ENSMUSG00000033581.18_0	chr16	-	3575	16	FSM	ENSMUSG00000033581.18	ENSMUST00000100052.11	3899	16	259	65	-21	0	multi-exon	FALSE	canonical	3	902	junction_2	81.6059366032208	1811	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2532	False	NA	NA	False	NA	NA	NA	21981790	21877823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
ENSMUSG00000033585.6_0	chr7	+	1602	1	FSM	ENSMUSG00000033585.6	ENSMUST00000038775.6	3694	1	1752	340	1752	-340	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAGATACTGTGAAATA	NA	False	NA	NA	False	AATAAA	-14	NA	61998068	61999670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_61998100_61999700
ENSMUSG00000033589.5_1	chr14	+	1603	8	FSM	ENSMUSG00000033589.5	ENSMUST00000047218.5	1565	8	-39	1	-39	-1	multi-exon	FALSE	canonical	3	225	junction_3	37.0515360886781	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTGTCTCTTCACATCT	6528	False	NA	29	True	AATAAA	-25	NA	70782754	70786372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_70783179_70783916_70783990_70784369_70784447_70784554_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
ENSMUSG00000033589.5_11	chr14	+	1695	7	FSM	ENSMUSG00000033589.5	ENSMUST00000226563.2	1444	7	68	-319	-35	-13	multi-exon	FALSE	canonical	3	251	junction_2	32.9313258497471	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCTCCTAATTTGT	6532	False	NA	17	True	AATAAA	-13	NA	70782758	70786360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_70783179_70783916_70783990_70784369_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
ENSMUSG00000033590.9_1	chr9	+	6692	41	FSM	ENSMUSG00000033590.9	ENSMUST00000036555.8	6727	41	29	6	-3	-6	multi-exon	TRUE	canonical	3	15	junction_20	11.0181384543851	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAATTGGATGCACCATT	5157	False	NA	2	True	AATAAA	-12	NA	75139330	75212727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419_75153565_75157014_75157172_75157654_75157799_75158722_75158805_75159805_75159914_75163112_75163220_75165240_75165507_75169489_75169572_75170266_75170408_75173349_75173476_75174306_75174391_75176802_75176938_75177550_75177649_75178824_75178912_75180126_75180239_75180790_75181003_75182752_75182919_75183183_75183331_75184213_75184379_75185506_75185601_75186617_75186682_75189117_75189299_75191174_75191269_75191428_75191493_75192214_75192296_75193692_75193874_75195330_75195425_75196174_75196239_75196340_75196510_75198130_75198219_75199435_75199535_75201207_75201363_75202443_75202534_75203291_75203443_75204685_75204969_75208087_75208263_75208685_75208767_75211211
ENSMUSG00000033590.9_17	chr9	+	178	1	NIC	ENSMUSG00000033590.9	novel	4782	30	NA	NA	-5322	-7648	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTACAAAATAATTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	75157822	75158000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_75157800_75158000
ENSMUSG00000033590.9_29	chr9	+	3156	12	FSM	ENSMUSG00000033590.9	ENSMUST00000215620.2	3189	12	27	6	27	-6	multi-exon	FALSE	canonical	3	30	junction_2	7.22140985754018	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAATTGGATGCACCATT	1744	False	NA	2	True	AATAAA	-12	NA	75195139	75212727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_75195425_75196174_75196239_75196340_75196510_75198130_75198219_75199435_75199535_75201207_75201363_75202443_75202534_75203291_75203443_75204685_75204969_75208087_75208263_75208685_75208767_75211211
ENSMUSG00000033590.9_34	chr9	+	1752	3	FSM	ENSMUSG00000033590.9	ENSMUST00000216529.2	2204	3	837	-385	837	-6	multi-exon	FALSE	canonical	3	35	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAATTGGATGCACCATT	NA	False	NA	2	True	AATAAA	-12	NA	75208107	75212727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_75208263_75208685_75208767_75211211
ENSMUSG00000033590.9_35	chr9	+	1276	1	ISM	ENSMUSG00000033590.9	ENSMUST00000036555.8	6727	41	72151	5	4182	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATTGGATGCACCATTT	NA	False	NA	3	True	AATAAA	-13	NA	75211452	75212728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_75211500_75212700
ENSMUSG00000033590.9_6	chr9	+	1560	10	ISM	ENSMUSG00000033590.9	ENSMUST00000036555.8	6727	41	39	47070	7	15	5prime_fragment	FALSE	canonical	3	35	junction_4	9.15302014516399	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTTCTGTAGAGTGTG	5167	False	NA	NA	False	AATATA	-16	NA	75139340	75165663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419_75153565_75157014_75157172_75157654_75157799_75158722_75158805_75159805_75159914_75163112_75163220_75165240
ENSMUSG00000033590.9_7	chr9	+	3559	4	ISM	ENSMUSG00000033590.9	ENSMUST00000216788.2	4782	30	-35	38314	-11	-9082	5prime_fragment	FALSE	canonical	3	45	junction_2	8.9566858950296	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	5149	False	NA	NA	False	NA	NA	NA	75139322	75156566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419
ENSMUSG00000033594.12_1	chr8	-	2383	3	FSM	ENSMUSG00000033594.12	ENSMUST00000098327.2	2380	3	-2	-1	-2	1	multi-exon	FALSE	canonical	1	2	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTGGAAAGGCTTTTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	123962950	123958995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123960985_123962256_123962589_123962888
ENSMUSG00000033594.12_2	chr8	-	2662	2	FSM	ENSMUSG00000033594.12	ENSMUST00000166768.3	2707	2	43	2	17	1	multi-exon	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTGGAAAGGCTTTTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	123962929	123958995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123960985_123962256
ENSMUSG00000033596.6_0	chr8	-	4418	13	FSM	ENSMUSG00000033596.6	ENSMUST00000038739.5	4443	13	23	2	-8	-2	multi-exon	FALSE	canonical	3	323	junction_9	43.0880074833925	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCCAGTGTCTTCCGCC	5519	False	NA	-11	True	AATAAA	-15	NA	112026831	111997577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517_112006669_112009148_112009378_112009906_112010022_112014689_112014782_112014860_112015044_112017502_112017571_112020622_112020808_112023766_112024275_112026766
ENSMUSG00000033596.6_1	chr8	-	1732	1	ISM	ENSMUSG00000033596.6	ENSMUST00000038739.5	4443	13	27545	2	27514	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCCAGTGTCTTCCGCC	NA	False	NA	-11	True	AATAAA	-15	NA	111999309	111997577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_111997600_111999300
ENSMUSG00000033596.6_4	chr8	-	4183	12	ISM	ENSMUSG00000033596.6	ENSMUST00000038739.5	4443	13	2750	2	2719	-2	3prime_fragment	FALSE	canonical	3	323	junction_9	44.3146152411024	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCCAGTGTCTTCCGCC	8246	False	NA	-11	True	AATAAA	-15	NA	112024104	111997577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517_112006669_112009148_112009378_112009906_112010022_112014689_112014782_112014860_112015044_112017502_112017571_112020622_112020808_112023766
ENSMUSG00000033597.10_2	chr17	+	6089	20	FSM	ENSMUSG00000033597.10	ENSMUST00000024958.9	5938	20	-161	10	21	-7	multi-exon	FALSE	canonical	1	2	junction_16	3.27755736356637	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACAGAGCTGCTTGGC	7691	False	NA	NA	False	AATAAA	-5	NA	24707595	24727635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24708038_24714939_24714992_24715093_24715192_24715399_24715546_24715627_24715724_24715837_24715969_24717831_24717941_24718034_24718144_24718226_24718322_24718476_24718595_24719670_24719773_24719864_24719954_24720033_24720119_24720203_24720308_24721089_24721201_24721290_24721393_24722774_24722914_24722993_24724995_24725496_24725912_24726090
ENSMUSG00000033597.10_4	chr17	+	5852	18	FSM	ENSMUSG00000033597.10	ENSMUST00000234717.2	5630	18	-239	17	35	-17	multi-exon	FALSE	canonical	1	1	junction_14	3.33483241954315	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAACAGCAGAAAACAGA	7705	False	NA	NA	False	NA	NA	NA	24707609	24727625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24708038_24714939_24714992_24715093_24715192_24715399_24715546_24715627_24715724_24715837_24715969_24717831_24717941_24718034_24718144_24718226_24718322_24718476_24718595_24719670_24719773_24719864_24719954_24720033_24720119_24720203_24720308_24722774_24722914_24722993_24724995_24725496_24725912_24726090
ENSMUSG00000033597.10_6	chr17	+	3631	4	ISM	ENSMUSG00000033597.10	ENSMUST00000234717.2	5630	18	14534	868	1731	-868	3prime_fragment	FALSE	canonical	2	7	junction_3	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAGAAGAAATATTATTG	2126	False	NA	NA	False	AATATA	-6	NA	24722382	24726774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24722914_24722993_24724995_24725496_24725912_24726090
ENSMUSG00000033610.17_0	chr19	-	989	1	ISM	ENSMUSG00000033610.17	ENSMUST00000036584.13	7414	7	67656	3871	66050	83	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTGTGGTCGCTGCTGCT	NA	False	NA	71	True	NA	NA	NA	34789199	34788210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_34788200_34789200
ENSMUSG00000033610.17_1	chr19	-	3134	7	FSM	ENSMUSG00000033610.17	ENSMUST00000036584.13	7414	7	325	3955	325	0	multi-exon	FALSE	canonical	3	103	junction_2	13.7204227340122	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCTTAGTGTACATGTT	NA	False	NA	-13	True	AATAAA	-17	NA	34856530	34788294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_34789788_34791091_34791218_34798499_34798624_34799112_34799290_34804519_34804774_34818156_34818510_34855923
ENSMUSG00000033610.17_3	chr19	-	2958	6	NIC	ENSMUSG00000033610.17	novel	7414	7	NA	NA	324	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	44.4639179560236	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCTTAGTGTACATGTT	NA	False	NA	-13	True	AATAAA	-17	NA	34856531	34788294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_34789788_34791091_34791218_34798499_34798624_34804519_34804774_34818156_34818510_34855923
ENSMUSG00000033615.10_1	chr5	-	2113	4	FSM	ENSMUSG00000033615.10	ENSMUST00000046892.10	2189	4	68	8	44	-8	multi-exon	FALSE	canonical	3	7	junction_1	1.4142135623731	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCGTGTGGCTATTCCTT	NA	False	NA	-8	True	AATAAA	-11	NA	108697822	108666427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_108668193_108673257_108673434_108696371_108696476_108697754
ENSMUSG00000033618.8_1	chr16	+	5472	1	ISM	ENSMUSG00000033618.8	ENSMUST00000231988.2	8583	15	133620	2	35997	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTTCTGGTCCTTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	21746715	21752187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_21746700_21752200
ENSMUSG00000033623.14_1	chr5	+	5031	11	FSM	ENSMUSG00000033623.14	ENSMUST00000046975.12	7708	11	41	2636	-40	-2636	multi-exon	FALSE	canonical	3	114	junction_9	9.83666610188635	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTTAACTAAAATCTC	NA	False	NA	NA	False	AATAAA	-9	NA	108609138	108652206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_108609318_108619937_108619978_108620242_108620384_108621654_108621773_108622975_108623073_108626168_108626225_108634005_108634114_108635701_108635791_108643699_108643838_108647492_108647574_108648222
ENSMUSG00000033623.14_27	chr5	+	2888	1	ISM	ENSMUSG00000033623.14	ENSMUST00000046975.12	7708	11	40228	2629	15240	-2629	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTAAAATCTCCCAGTCT	NA	False	NA	NA	False	AATAAA	-16	NA	108649325	108652213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_108649300_108652200
ENSMUSG00000033624.11_0	chr8	+	7551	18	FSM	ENSMUSG00000033624.11	ENSMUST00000039333.10	4938	18	79	-2692	65	2692	multi-exon	TRUE	canonical	3	24	junction_1	8.20878085010087	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACTATTGTAATATTCAC	NA	False	NA	3	True	AATAAA	-12	NA	111821351	111866398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_111821459_111828445_111828723_111830535_111830670_111839133_111839216_111839318_111839483_111841373_111841496_111841755_111841874_111843313_111843464_111844598_111844792_111847779_111847905_111850376_111850533_111851110_111851245_111852236_111852386_111852847_111852961_111854874_111854970_111856237_111856328_111859508_111859692_111861239
ENSMUSG00000033624.11_10	chr8	+	6532	11	ISM	ENSMUSG00000033624.11	ENSMUST00000039333.10	4938	18	22056	-2692	22042	2692	3prime_fragment	FALSE	canonical	3	26	junction_10	8.01498596380555	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACTATTGTAATATTCAC	NA	False	NA	3	True	AATAAA	-12	NA	111843328	111866398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111843464_111844598_111844792_111847779_111847905_111850376_111850533_111851110_111851245_111852236_111852386_111852847_111852961_111854874_111854970_111856237_111856328_111859508_111859692_111861239
ENSMUSG00000033624.11_11	chr8	+	6087	10	ISM	ENSMUSG00000033624.11	ENSMUST00000039333.10	4938	18	23501	-2557	23487	2557	3prime_fragment	FALSE	canonical	3	26	junction_9	8.40634680861233	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGCAAACTCAGCCGACT	NA	False	NA	NA	False	AATAAA	-11	NA	111844773	111866263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111844792_111847779_111847905_111850376_111850533_111851110_111851245_111852236_111852386_111852847_111852961_111854874_111854970_111856237_111856328_111859508_111859692_111861239
ENSMUSG00000033624.11_12	chr8	+	5204	2	ISM	ENSMUSG00000033624.11	ENSMUST00000039333.10	4938	18	38374	-2692	38360	2692	3prime_fragment	FALSE	canonical	3	26	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACTATTGTAATATTCAC	NA	False	NA	3	True	AATAAA	-12	NA	111859646	111866398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111859692_111861239
ENSMUSG00000033624.11_17	chr8	+	5988	8	ISM	ENSMUSG00000033624.11	ENSMUST00000039333.10	4938	18	29197	-2694	29183	2694	3prime_fragment	FALSE	canonical	3	26	junction_7	5.92469752952221	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATTGTAATATTCACTT	NA	False	NA	5	True	AATAAA	-14	NA	111850469	111866400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111850533_111851110_111851245_111852236_111852386_111852847_111852961_111854874_111854970_111856237_111856328_111859508_111859692_111861239
ENSMUSG00000033624.11_2	chr8	+	7495	18	NIC	ENSMUSG00000033624.11	novel	4938	18	NA	NA	76	2694	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	9.5822789149634	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATTGTAATATTCACTT	NA	False	NA	5	True	AATAAA	-14	NA	111821362	111866400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_111821459_111828492_111828723_111830535_111830670_111839133_111839216_111839318_111839483_111841373_111841496_111841755_111841874_111843313_111843464_111844598_111844792_111847779_111847905_111850376_111850533_111851110_111851245_111852236_111852386_111852847_111852961_111854874_111854970_111856237_111856328_111859508_111859692_111861239
ENSMUSG00000033624.11_22	chr8	+	5539	4	ISM	ENSMUSG00000033624.11	ENSMUST00000039333.10	4938	18	33600	-2702	33586	2702	3prime_fragment	FALSE	canonical	3	26	junction_3	6.94422221866655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTCACTTGTGAAATG	NA	False	NA	13	True	AATAAA	-22	NA	111854872	111866408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111854970_111856237_111856328_111859508_111859692_111861239
ENSMUSG00000033624.11_7	chr8	+	7435	17	ISM	ENSMUSG00000033624.11	ENSMUST00000039333.10	4938	18	7182	-2692	7168	2692	3prime_fragment	FALSE	canonical	3	26	junction_16	7.68902423913464	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACTATTGTAATATTCAC	NA	False	NA	3	True	AATAAA	-12	NA	111828454	111866398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111828723_111830535_111830670_111839133_111839216_111839318_111839483_111841373_111841496_111841755_111841874_111843313_111843464_111844598_111844792_111847779_111847905_111850376_111850533_111851110_111851245_111852236_111852386_111852847_111852961_111854874_111854970_111856237_111856328_111859508_111859692_111861239
ENSMUSG00000033628.16_2	chr18	+	3119	25	FSM	ENSMUSG00000033628.16	ENSMUST00000115812.10	3257	25	131	7	6	-1	multi-exon	FALSE	canonical	3	114	junction_11	21.8495089571063	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTCATATGCCTTGTTTT	NA	False	NA	5	True	AGTAAA	-16	NA	30405930	30481172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_30406072_30407321_30407511_30410024_30410169_30415009_30415140_30421803_30421891_30423523_30423620_30426111_30426184_30426671_30426777_30427388_30427482_30431625_30431812_30435972_30436128_30436618_30436710_30438027_30438096_30444272_30444379_30445604_30445722_30449895_30450028_30452553_30452683_30453286_30453357_30455222_30455288_30456574_30456660_30457596_30457672_30466213_30466383_30469146_30469238_30477003_30477130_30480775
ENSMUSG00000033629.7_1	chr9	-	2709	11	FSM	ENSMUSG00000033629.7	ENSMUST00000036615.7	2709	11	-3	3	-3	-3	multi-exon	FALSE	canonical	3	252	junction_1	24.7620677650313	462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAACTTGTGCTTAAACA	NA	False	NA	-4	True	ATTAAA	-20	NA	64928978	64894267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_64895812_64897598_64897731_64898255_64898363_64899538_64899652_64905476_64905605_64908262_64908374_64911538_64911591_64912889_64913055_64913842_64913917_64917755_64917799_64928738
ENSMUSG00000033632.17_0	chr18	+	5343	11	FSM	ENSMUSG00000033632.17	ENSMUST00000097643.10	5351	11	0	8	0	-3	multi-exon	FALSE	canonical	3	22	junction_9	9.53100204595508	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTTCTTACAGTGTAAT	NA	False	NA	4	True	AATAAA	-13	NA	25302076	25600370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917_25337034_25422995_25423124_25472770_25473442_25477920_25478020_25532982_25533165_25553023_25553133_25596673
ENSMUSG00000033632.17_14	chr18	+	3049	1	ISM	ENSMUSG00000033632.17	ENSMUST00000165400.8	5351	12	295252	1	230357	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACAGTGTAATAATTTTT	NA	False	NA	11	True	AATAAA	-20	NA	25597328	25600377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_25597300_25600400
ENSMUSG00000033632.17_2	chr18	+	2065	5	ISM	ENSMUSG00000033632.17	ENSMUST00000162149.2	1427	6	-1	85325	-1	16350	5prime_fragment	FALSE	canonical	3	40	junction_3	4.32290411644765	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGGCTTTATGTTGA	NA	False	NA	NA	False	AATAAA	-14	NA	25302075	25338640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917
ENSMUSG00000033644.6_0	chr14	-	4838	23	NIC	ENSMUSG00000033644.6	novel	4916	23	NA	NA	-15	-3	combination_of_known_junctions	FALSE	canonical	3	45	junction_14	9.98511288563344	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTTGTGTCTGAGAGAAT	NA	False	NA	-17	True	AATAAA	-15	NA	70666847	70609928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_70611886_70613387_70613496_70614111_70614366_70627340_70627447_70627976_70628066_70628812_70628930_70629927_70630030_70631459_70631649_70632776_70632891_70635592_70635734_70637183_70637274_70638866_70638952_70639482_70639672_70646359_70646474_70646753_70646835_70647830_70647956_70648582_70648701_70658088_70658200_70658897_70659105_70660076_70660216_70660343_70660432_70663955_70664193_70666770
ENSMUSG00000033644.6_2	chr14	-	4909	23	FSM	ENSMUSG00000033644.6	ENSMUST00000048129.6	4916	23	4	3	4	-3	multi-exon	FALSE	canonical	3	11	junction_22	14.3650747266008	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTTGTGTCTGAGAGAAT	NA	False	NA	-17	True	AATAAA	-15	NA	70666539	70609928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70611886_70613387_70613496_70614111_70614366_70627340_70627447_70627976_70628066_70628812_70628930_70629927_70630030_70631459_70631649_70632776_70632891_70635592_70635734_70637183_70637274_70638866_70638952_70639482_70639672_70646359_70646474_70646753_70646835_70647830_70647956_70648582_70648701_70658088_70658200_70658897_70659105_70660076_70660216_70660343_70660432_70663955_70664193_70666391
ENSMUSG00000033653.19_0	chr16	+	4956	47	FSM	ENSMUSG00000033653.19	ENSMUST00000117598.8	4935	47	-18	-3	14	0	multi-exon	FALSE	canonical	3	107	junction_1	17.1577937561462	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCTGCCAGTCTCTTGGT	NA	False	NA	16	True	AATAAA	-22	NA	21241932	21463425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_21241976_21253436_21253814_21254502_21254572_21261083_21261215_21262838_21262933_21266004_21266038_21267098_21267154_21274978_21275104_21276128_21276216_21278490_21278559_21279871_21280026_21280127_21280188_21282344_21282453_21285163_21285245_21288866_21289038_21293997_21294073_21295223_21295260_21296235_21296327_21296594_21296642_21297143_21297234_21314629_21314677_21318937_21319161_21323147_21323238_21325519_21325572_21330268_21330312_21336032_21336106_21336862_21336983_21340633_21340706_21345126_21345247_21346285_21346343_21350029_21350113_21351032_21351118_21351812_21351912_21358768_21358859_21362017_21362065_21372824_21372973_21378083_21378174_21378947_21378991_21381879_21381984_21386718_21386804_21387138_21387222_21393716_21393798_21395374_21395545_21400282_21400449_21426917_21426972_21459428_21459510_21462870
ENSMUSG00000033653.19_32	chr16	+	4912	46	ISM	ENSMUSG00000033653.19	ENSMUST00000117598.8	4935	47	11484	0	11413	0	3prime_fragment	FALSE	canonical	3	130	junction_4	15.7563234415603	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGGCCTGCCAGTCTCTT	NA	False	NA	13	True	AATAAA	-19	NA	21253434	21463422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_21253814_21254502_21254572_21261083_21261215_21262838_21262933_21266004_21266038_21267098_21267154_21274978_21275104_21276128_21276216_21278490_21278559_21279871_21280026_21280127_21280188_21282344_21282453_21285163_21285245_21288866_21289038_21293997_21294073_21295223_21295260_21296235_21296327_21296594_21296642_21297143_21297234_21314629_21314677_21318937_21319161_21323147_21323238_21325519_21325572_21330268_21330312_21336032_21336106_21336862_21336983_21340633_21340706_21345126_21345247_21346285_21346343_21350029_21350113_21351032_21351118_21351812_21351912_21358768_21358859_21362017_21362065_21372824_21372973_21378083_21378174_21378947_21378991_21381879_21381984_21386718_21386804_21387138_21387222_21393716_21393798_21395374_21395545_21400282_21400449_21426917_21426972_21459428_21459510_21462870
ENSMUSG00000033653.19_4	chr16	+	4902	47	NIC	ENSMUSG00000033653.19	novel	4935	47	NA	NA	13	1	combination_of_known_junctions	TRUE	canonical	3	14	junction_1	25.942753613068	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGCCTGCCAGTCTCTTG	NA	False	NA	14	True	AATAAA	-20	NA	21241931	21463423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_21241976_21253489_21253814_21254502_21254572_21261083_21261215_21262838_21262933_21266004_21266038_21267098_21267154_21274978_21275104_21276128_21276216_21278490_21278559_21279871_21280026_21280127_21280188_21282344_21282453_21285163_21285245_21288866_21289038_21293997_21294073_21295223_21295260_21296235_21296327_21296594_21296642_21297143_21297234_21314629_21314677_21318937_21319161_21323147_21323238_21325519_21325572_21330268_21330312_21336032_21336106_21336862_21336983_21340633_21340706_21345126_21345247_21346285_21346343_21350029_21350113_21351032_21351118_21351812_21351912_21358768_21358859_21362017_21362065_21372824_21372973_21378083_21378174_21378947_21378991_21381879_21381984_21386718_21386804_21387138_21387222_21393716_21393798_21395374_21395545_21400282_21400449_21426917_21426972_21459428_21459510_21462870
ENSMUSG00000033658.17_0	chr8	-	6579	12	FSM	ENSMUSG00000033658.17	ENSMUST00000040241.15	6612	12	26	7	26	-7	multi-exon	FALSE	canonical	3	85	junction_11	90.8713558047041	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTATGGGTATTT	NA	False	NA	-12	True	AATAAA	-10	NA	111754370	111729826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111754229
ENSMUSG00000033658.17_2	chr8	-	6547	12	FSM	ENSMUSG00000033658.17	ENSMUST00000065784.6	3104	12	21	-3464	21	-7	multi-exon	FALSE	canonical	3	86	junction_11	90.7354705715175	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTATGGGTATTT	NA	False	NA	-12	True	AATAAA	-10	NA	111758362	111729826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
ENSMUSG00000033658.17_5	chr8	-	3519	1	ISM	ENSMUSG00000033658.17	ENSMUST00000040241.15	6612	12	21051	7	21051	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTATGGGTATTT	NA	False	NA	-12	True	AATAAA	-10	NA	111733345	111729826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_111729800_111733300
ENSMUSG00000033669.9_0	chr15	+	2702	5	NIC	ENSMUSG00000033669.9	novel	2772	5	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	31.1398057155147	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTAAAGGTGTAGCCTGT	NA	False	NA	NA	False	AATAAA	-11	NA	76763517	76776587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76763554_76764938_76764983_76765314_76765439_76772430_76772548_76774206
ENSMUSG00000033669.9_2	chr15	+	2111	1	ISM	ENSMUSG00000033669.9	ENSMUST00000023179.7	2772	5	11018	8	10942	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTAAAGGTGTAGCCTGT	NA	False	NA	NA	False	AATAAA	-11	NA	76774476	76776587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76774500_76776600
ENSMUSG00000033671.19_1	chr1	-	2996	1	ISM	ENSMUSG00000033671.19	ENSMUST00000138762.8	13307	38	125293	3	13411	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTCCATGTCCGGTGTAA	NA	False	NA	NA	False	AATAAA	-14	NA	155723708	155720712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_155720700_155723700
ENSMUSG00000033671.19_2	chr1	-	5334	5	ISM	ENSMUSG00000033671.19	ENSMUST00000138762.8	13307	38	110706	7	-1176	-7	3prime_fragment	TRUE	canonical	3	19	junction_4	2.95803989154981	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTAATTCCATGTCCGGT	3835	False	NA	NA	False	AATAAA	-10	NA	155738295	155720716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_155724474_155733768_155733892_155735914_155736062_155736181_155736587_155737393
ENSMUSG00000033671.19_3	chr1	-	4198	4	ISM	ENSMUSG00000033671.19	ENSMUST00000132189.2	1089	5	765	-3560	765	-9	3prime_fragment	FALSE	canonical	3	21	junction_2	2.49443825784929	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTAATTCCATGTCCG	5776	False	NA	NA	False	AATAAA	-8	NA	155736354	155720718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_155724474_155733768_155733892_155735914_155736062_155736181
ENSMUSG00000033671.19_4	chr1	-	6647	8	ISM	ENSMUSG00000033671.19	ENSMUST00000138762.8	13307	38	101314	9	-10568	-9	3prime_fragment	TRUE	canonical	3	16	junction_7	3.18157963590287	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTAATTCCATGTCCG	4041	False	NA	NA	False	AATAAA	-8	NA	155747687	155720718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_155724474_155733768_155733892_155735914_155736062_155736181_155736587_155737393_155739358_155741785_155741869_155744416_155744554_155747654
ENSMUSG00000033676.14_0	chr7	+	5519	9	FSM	ENSMUSG00000033676.14	ENSMUST00000196198.5	4348	9	-13	-1158	-13	-6	multi-exon	FALSE	canonical	1	4	junction_1	10.0739453542294	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGATAAATGTGAAGACT	NA	False	NA	NA	False	ATTAAA	-9	NA	57240252	57478540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_57240397_57241228_57241321_57241518_57241587_57415171_57415393_57438613_57438697_57442239_57442378_57461801_57461955_57466022_57466268_57474165
ENSMUSG00000033676.14_1	chr7	+	5553	9	FSM	ENSMUSG00000033676.14	ENSMUST00000039697.14	5579	9	11	15	0	-11	multi-exon	FALSE	canonical	3	23	junction_5	6.11223158919883	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAACTGATAAATGTGA	NA	False	NA	NA	False	ATTAAA	-4	NA	57240920	57478535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_57241104_57241228_57241321_57241518_57241587_57415171_57415393_57438613_57438697_57442239_57442378_57461801_57461955_57466022_57466268_57474165
ENSMUSG00000033676.14_10	chr7	+	826	5	ISM	ENSMUSG00000033676.14	ENSMUST00000039697.14	5579	9	12	39674	1	23347	5prime_fragment	FALSE	canonical	3	32	junction_3	4.32290411644765	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGTATTAGAGAATTA	NA	False	NA	NA	False	AAAACA	-2	NA	57240921	57438876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_57241104_57241228_57241321_57241518_57241587_57415171_57415393_57438613
ENSMUSG00000033676.14_12	chr7	+	5192	6	ISM	ENSMUSG00000033676.14	ENSMUST00000039697.14	5579	9	174280	15	-26686	-11	3prime_fragment	FALSE	canonical	3	23	junction_2	3.9293765408777	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAACTGATAAATGTGA	NA	False	NA	NA	False	ATTAAA	-4	NA	57415189	57478535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_57415393_57438613_57438697_57442239_57442378_57461801_57461955_57466022_57466268_57474165
ENSMUSG00000033676.14_3	chr7	+	1346	6	ISM	ENSMUSG00000033676.14	ENSMUST00000039697.14	5579	9	7	35616	-4	-23129	5prime_fragment	FALSE	canonical	3	23	junction_5	6.72309452558864	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGATGTCTGGGGTGAT	NA	False	NA	NA	False	NA	NA	NA	57240916	57442934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_57241104_57241228_57241321_57241518_57241587_57415171_57415393_57438613_57438697_57442239
ENSMUSG00000033676.14_8	chr7	+	3601	1	ISM	ENSMUSG00000033676.14	ENSMUST00000085240.11	5712	10	405500	6	33064	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGATAAATGTGAAGACT	6354	False	NA	NA	False	ATTAAA	-9	NA	57474939	57478540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_57474900_57478500
ENSMUSG00000033684.15_0	chr1	-	2454	13	FSM	ENSMUSG00000033684.15	ENSMUST00000194632.2	2433	13	-22	1	-15	-1	multi-exon	FALSE	canonical	3	21	junction_7	5.99247212944893	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCAGAACGTGTTTGACTT	NA	False	NA	-6	True	AATAAA	-18	NA	155688612	155653908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_155654598_155655463_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
ENSMUSG00000033684.15_1	chr1	-	4727	12	NIC	ENSMUSG00000033684.15	novel	2433	13	NA	NA	14	-1	intron_retention	FALSE	canonical	3	21	junction_7	5.74096487412616	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACGTGTTTGACTTGAT	NA	False	NA	-3	True	AATAAA	-21	NA	155688621	155653905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_155654598_155655463_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155670395_155671096_155671143_155679442_155679544_155688271
ENSMUSG00000033684.15_5	chr1	-	3324	12	FSM	ENSMUSG00000033684.15	ENSMUST00000035325.15	3348	12	19	5	-19	-1	multi-exon	FALSE	canonical	3	21	junction_6	6.25887799202127	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCAGAACGTGTTTGACTT	NA	False	NA	-6	True	AATAAA	-18	NA	155688616	155653908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
ENSMUSG00000033685.14_10	chr7	+	1464	7	ISM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	877	2395	147	323	3prime_fragment	FALSE	canonical	3	391	junction_1	52.4139506450546	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	13	True	CATAAA	-15	NA	100143420	100148832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100143583_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033685.14_16	chr7	+	1198	6	ISM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	3493	2395	-366	323	3prime_fragment	FALSE	canonical	3	402	junction_1	49.9855979258026	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	13	True	CATAAA	-15	NA	100146036	100148832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033685.14_19	chr7	+	814	4	ISM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	4793	2397	-11	321	3prime_fragment	FALSE	canonical	3	444	junction_1	36.3532055746884	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTCTTCTTTCTCATA	NA	False	NA	11	True	CATAAA	-13	NA	100147336	100148830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033685.14_3	chr7	+	1572	8	FSM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	21	2395	4	323	multi-exon	TRUE	canonical	3	366	junction_1	56.4938140012529	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	13	True	CATAAA	-15	NA	100142564	100148832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100142673_100143420_100143583_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033697.17_0	chr15	-	4578	12	FSM	ENSMUSG00000033697.17	ENSMUST00000239003.2	4587	12	5	4	5	-4	multi-exon	FALSE	canonical	3	33	junction_5	14.9749101461177	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGCTGATTGTGTTTCTT	8174	False	NA	-8	True	AATAAA	-13	NA	76702365	76608188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76609377_76609522_76609693_76610122_76610215_76610828_76611029_76611602_76611677_76614563_76614657_76619076_76619639_76620655_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
ENSMUSG00000033697.17_20	chr15	-	4841	6	FSM	ENSMUSG00000033697.17	ENSMUST00000177011.2	4145	6	-1	-695	-1	695	multi-exon	FALSE	canonical	3	56	junction_1	12.3353151560874	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCAGCAATTTTGGGGCT	8209	False	NA	NA	False	NA	NA	NA	76702330	76616961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76619639_76620655_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
ENSMUSG00000033697.17_23	chr15	-	597	3	FSM	ENSMUSG00000033697.17	ENSMUST00000176219.9	542	3	-62	7	2	-3	multi-exon	FALSE	canonical	3	22	junction_1	34	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAGTTCAGCCCATGT	8171	False	NA	NA	False	NA	NA	NA	76702368	76642247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76642501_76649684_76649852_76702191
ENSMUSG00000033697.17_25	chr15	-	173	1	ISM	ENSMUSG00000033697.17	ENSMUST00000176219.9	542	3	59879	14	-32624	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTTTAAAGAAAGTTCAG	NA	False	NA	NA	False	NA	NA	NA	76642427	76642254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_76642300_76642400
ENSMUSG00000033697.17_4	chr15	-	4485	11	FSM	ENSMUSG00000033697.17	ENSMUST00000239134.2	4494	11	5	4	5	-4	multi-exon	FALSE	canonical	3	26	junction_5	15.2761251631426	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGCTGATTGTGTTTCTT	8174	False	NA	-8	True	AATAAA	-13	NA	76702365	76608188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76609377_76609522_76609693_76610122_76610215_76610828_76611029_76611602_76611677_76619076_76619639_76620655_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
ENSMUSG00000033701.14_0	chr1	+	960	4	FSM	ENSMUSG00000033701.14	ENSMUST00000080138.13	993	4	32	1	26	-1	multi-exon	FALSE	canonical	3	223	junction_3	63.2525800966956	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGTCATGGTGT	NA	False	NA	14	True	NA	NA	NA	155433897	155448033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155447943
ENSMUSG00000033701.14_1	chr1	+	1467	8	FSM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	27	4098	23	137	multi-exon	TRUE	canonical	3	134	junction_7	98.5478232605254	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCGACGTCTCAGCAACT	NA	False	NA	28	True	AATAAA	-20	NA	155433894	155562978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155477199_155477283_155491612_155491719_155500614_155500705_155552949_155552981_155562694
ENSMUSG00000033701.14_7	chr1	+	1224	4	FSM	ENSMUSG00000033701.14	ENSMUST00000097529.5	1255	4	27	4	27	-4	multi-exon	FALSE	canonical	3	9	junction_3	164.081280671095	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGATCCCGGAGATAAG	NA	False	NA	2	True	NA	NA	NA	155433898	155463540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155463185
ENSMUSG00000033703.10_1	chr8	-	3458	18	ISM	ENSMUSG00000033703.10	ENSMUST00000041382.7	3838	24	7461	7	4502	-7	3prime_fragment	TRUE	canonical	3	101	junction_7	11.9852850956299	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTGTCTTCAGAAAACT	8704	False	NA	-14	True	AATAAA	-12	NA	111621630	111609101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613319_111613682_111613905_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616373_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360
ENSMUSG00000033703.10_2	chr8	-	3819	24	FSM	ENSMUSG00000033703.10	ENSMUST00000041382.7	3838	24	12	7	1	-7	multi-exon	FALSE	canonical	3	94	junction_23	12.3354193641104	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTGTCTTCAGAAAACT	1255	False	NA	-14	True	AATAAA	-12	NA	111629079	111609101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613319_111613682_111613905_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616373_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360_111621459_111621901_111621975_111622515_111622642_111625830_111625882_111626026_111626179_111626464_111626570_111629053
ENSMUSG00000033703.10_22	chr8	-	3410	19	ISM	ENSMUSG00000033703.10	ENSMUST00000041382.7	3838	24	7066	7	4107	-7	3prime_fragment	FALSE	canonical	3	101	junction_7	12.1438141546312	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTGTCTTCAGAAAACT	8309	False	NA	-14	True	AATAAA	-12	NA	111622025	111609101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613319_111613682_111613905_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616373_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360_111621459_111621901
ENSMUSG00000033703.10_27	chr8	-	3598	23	NIC	ENSMUSG00000033703.10	novel	3838	24	NA	NA	0	-7	combination_of_known_splicesites	FALSE	canonical	3	8	junction_6	25.2077319897312	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTGTCTTCAGAAAACT	1254	False	NA	-14	True	AATAAA	-12	NA	111629080	111609101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613319_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616373_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360_111621459_111621901_111621975_111622515_111622642_111625830_111625882_111626026_111626179_111626464_111626570_111629053
ENSMUSG00000033703.10_51	chr8	-	3788	23	ISM	ENSMUSG00000033703.10	ENSMUST00000041382.7	3838	24	2527	7	-432	-7	3prime_fragment	FALSE	canonical	3	101	junction_7	11.7114057565003	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTGTCTTCAGAAAACT	3770	False	NA	-14	True	AATAAA	-12	NA	111626564	111609101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613319_111613682_111613905_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616373_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360_111621459_111621901_111621975_111622515_111622642_111625830_111625882_111626026_111626179_111626464
ENSMUSG00000033705.18_0	chr2	+	5125	11	ISM	ENSMUSG00000033705.18	ENSMUST00000154193.8	5377	13	-1602	16064	-1602	-1	5prime_fragment	FALSE	canonical	1	3	junction_3	3.71618083521241	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTCTTTTCTATTGCAAA	NA	False	NA	NA	False	AGTAAA	-15	NA	120533470	120546312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_120536062_120536149_120536348_120536745_120536930_120537298_120537437_120543105_120543224_120543330_120543453_120543655_120543721_120543845_120544049_120544227_120544308_120544485_120544645_120545045
ENSMUSG00000033705.18_4	chr2	+	263	1	ISM	ENSMUSG00000033705.18	ENSMUST00000154193.8	5377	13	27036	5	16360	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGACCTTTTTGTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	120562108	120562371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_120562100_120562400
ENSMUSG00000033706.14_1	chr6	+	2478	13	FSM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	-1	9	-1	-9	multi-exon	FALSE	canonical	3	411	junction_7	60.725246442938	801	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGCCTTTGCAACAATGC	NA	False	NA	19	True	AATAAA	-13	NA	85408969	85423408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
ENSMUSG00000033712.7_2	chr14	-	3610	21	FSM	ENSMUSG00000033712.7	ENSMUST00000035612.7	3725	21	106	9	106	-9	multi-exon	TRUE	canonical	0	0	junction_8	38.4373191052654	305	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACAAACCAAGTGTGAG	NA	False	NA	35	True	AATAAA	-9	NA	70391154	70375625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379297_70379391_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
ENSMUSG00000033713.13_0	chr12	-	3569	1	ISM	ENSMUSG00000033713.13	ENSMUST00000046859.12	7705	6	200139	12	97619	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTGAAAATAAGTATTGTG	2748	False	NA	NA	False	AATAAA	-18	NA	99159917	99156348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_99156300_99159900
ENSMUSG00000033713.13_1	chr12	-	3277	6	FSM	ENSMUSG00000033713.13	ENSMUST00000177451.8	2882	6	54	-449	54	449	multi-exon	FALSE	canonical	3	70	junction_2	12.3709336753537	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCTTCATGCTCTGGTAG	NA	False	NA	-35	True	TATAAA	-1	NA	99359277	99160903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_99163073_99175719_99175826_99257495_99257561_99307680_99307794_99354619_99355177_99359010
ENSMUSG00000033713.13_2	chr12	-	2269	1	ISM	ENSMUSG00000033713.13	ENSMUST00000046859.12	7705	6	197420	4031	94900	985	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9784	False	NA	NA	False	NA	NA	NA	99162636	99160367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_99160400_99162600
ENSMUSG00000033713.13_22	chr12	-	3362	7	NIC	ENSMUSG00000033713.13	novel	2882	6	NA	NA	49	466	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	39.7020150622106	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGCTTGGATGGTTGAG	NA	False	NA	-18	True	TATAAA	-18	NA	99359282	99160886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_99163073_99175719_99175826_99185859_99185923_99257495_99257561_99307680_99307794_99354619_99355177_99359010
ENSMUSG00000033713.13_6	chr12	-	2883	7	NIC	ENSMUSG00000033713.13	novel	2611	6	NA	NA	-34	91	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	40.5890653036285	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99529875	99161261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_99163073_99175719_99175826_99257495_99257561_99307680_99307794_99354619_99355177_99416283_99416369_99529729
ENSMUSG00000033713.13_7	chr12	-	3354	7	NIC	ENSMUSG00000033713.13	novel	2882	6	NA	NA	57	463	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	38.9615194775563	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTAGGGGCTTGGATGGTT	NA	False	NA	-21	True	TATAAA	-15	NA	99359274	99160889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_99163073_99175719_99175826_99185856_99185923_99257495_99257561_99307680_99307794_99354619_99355177_99359010
ENSMUSG00000033717.7_1	chr19	+	3400	2	FSM	ENSMUSG00000033717.7	ENSMUST00000237285.2	3592	2	170	22	170	-22	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAATAAACATGAATTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	54033860	54037389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_54034209_54034337
ENSMUSG00000033720.13_0	chr6	-	2106	1	ISM	ENSMUSG00000033720.13	ENSMUST00000045846.12	3656	14	118260	8	49771	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACACAGGTGTGGCTT	NA	False	NA	-7	True	AATAAA	-10	NA	85192144	85190038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_85190000_85192100
ENSMUSG00000033720.13_2	chr6	-	3642	14	FSM	ENSMUSG00000033720.13	ENSMUST00000045846.12	3656	14	5	9	2	-9	multi-exon	TRUE	canonical	0	0	junction_1	2.89664159750196	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACACACAGGTGTGGCT	NA	False	NA	-8	True	AATAAA	-9	NA	85310399	85190039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85192729_85206175_85206294_85211744_85211831_85213821_85213938_85233324_85233416_85244853_85244920_85246079_85246137_85246891_85246946_85264031_85264058_85266158_85266214_85266743_85266771_85276521_85276600_85296503_85296573_85310289
ENSMUSG00000033721.17_0	chr3	+	4983	27	FSM	ENSMUSG00000033721.17	ENSMUST00000046864.14	5019	27	31	5	1	-1	multi-exon	TRUE	canonical	0	0	junction_1	0.566573840871394	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAGAGTAATTCCTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	109247999	109593009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_109248559_109331306_109331424_109402093_109402153_109404203_109404270_109408693_109408803_109410725_109410819_109413711_109413781_109416099_109416204_109418201_109418302_109423303_109423400_109426748_109426818_109428756_109428844_109433184_109433271_109434729_109434863_109435590_109435701_109470058_109470161_109470419_109470521_109481421_109481448_109485634_109485681_109535346_109535484_109554987_109555054_109559101_109559137_109564557_109564675_109565237_109565326_109571619_109571750_109590121_109590274_109590883
ENSMUSG00000033722.10_0	chr1	-	4105	1	FSM	ENSMUSG00000033722.10	ENSMUST00000185937.2	1511	1	-2597	3	-2597	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTGCTGGATTCTGTCTT	7307	False	NA	NA	False	ATTAAA	-22	NA	155092324	155088219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_155088200_155092300
ENSMUSG00000033726.9_0	chr6	+	1559	3	FSM	ENSMUSG00000033726.9	ENSMUST00000045942.9	1561	3	101	-99	101	-5	multi-exon	FALSE	canonical	2	3	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTATGACGTAGCTATCC	9521	False	NA	NA	False	AATAAA	-10	NA	85164520	85181439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_85165346_85171019_85171205_85180890
ENSMUSG00000033728.15_11	chr15	+	2145	4	FSM	ENSMUSG00000033728.15	ENSMUST00000036423.15	2093	4	3	-55	-1	-1	multi-exon	FALSE	canonical	3	5	junction_1	47.8957200593122	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTAGTGTTGCTTTATC	NA	False	NA	NA	False	NA	NA	NA	76594841	76599290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76595037_76597066_76597421_76597600_76598186_76598279
ENSMUSG00000033728.15_13	chr15	+	2414	3	FSM	ENSMUSG00000033728.15	ENSMUST00000142506.2	3943	3	-23	1552	1	5	multi-exon	FALSE	canonical	3	39	junction_1	41.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGCTTTATCATGACC	NA	False	NA	NA	False	NA	NA	NA	76594849	76599296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76595128_76597066_76598186_76598279
ENSMUSG00000033728.15_15	chr15	+	2305	5	NIC	ENSMUSG00000033728.15	novel	2286	6	NA	NA	6	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	44.5890962007529	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTCTAGTGTTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	76594854	76599288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76595037_76595555_76595731_76597066_76597421_76597600_76598186_76598279
ENSMUSG00000033728.15_19	chr15	+	2270	1	ISM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	4788	4	4695	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCTTGGTTATTCTGGA	NA	False	NA	NA	False	AATAAA	-13	NA	76599625	76601895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76599600_76601900
ENSMUSG00000033728.15_2	chr15	+	2223	4	FSM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	11	2615	0	0	multi-exon	FALSE	canonical	3	39	junction_1	34.1792659696229	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCATTTCTAGTGTTGC	NA	False	NA	NA	False	NA	NA	NA	76594848	76599284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76595128_76597066_76597421_76597600_76598186_76598279
ENSMUSG00000033728.15_6	chr15	+	2369	4	NIC	ENSMUSG00000033728.15	novel	2286	6	NA	NA	-5	-1	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	48.3206880009887	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGCATTTCTAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	76594857	76599283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76595284_76597066_76597421_76597600_76598186_76598279
ENSMUSG00000033728.15_7	chr15	+	2829	4	FSM	ENSMUSG00000033728.15	ENSMUST00000137649.8	2832	4	7	-4	1	-3	multi-exon	FALSE	canonical	3	40	junction_1	33.8066397160216	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTCTAGTGTTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	76594849	76599288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76595731_76597066_76597421_76597600_76598186_76598279
ENSMUSG00000033728.15_9	chr15	+	2407	5	NIC	ENSMUSG00000033728.15	novel	2832	4	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	41.7282877674126	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTAGTGTTGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	76594844	76599289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76595128_76595555_76595731_76597066_76597421_76597600_76598186_76598279
ENSMUSG00000033732.11_2	chr8	-	4274	26	FSM	ENSMUSG00000033732.11	ENSMUST00000042012.7	4525	26	-4	255	-4	-255	multi-exon	FALSE	canonical	3	597	junction_23	101.482656646345	1333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGCGTGTGTAGTTTT	NA	False	NA	-30	True	TATAAA	-15	NA	111573412	111537125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
ENSMUSG00000033732.11_9	chr8	-	4246	26	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-4	-255	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_25	162.261990620108	131	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGCGTGTGTAGTTTT	NA	False	NA	-30	True	TATAAA	-15	NA	111573412	111537125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573334
ENSMUSG00000033735.10_1	chr6	-	1219	3	FSM	ENSMUSG00000033735.10	ENSMUST00000045986.8	1230	3	5	6	1	3	multi-exon	FALSE	canonical	3	345	junction_2	5	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAATAGAGTGTGCGTTG	7987	False	NA	NA	False	AATACA	-15	NA	85114743	85110665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85111271_85113804_85114096_85114420
ENSMUSG00000033735.10_2	chr6	-	226	1	ISM	ENSMUSG00000033735.10	ENSMUST00000204757.3	3545	4	3861	3504	3851	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGAGTGTGCGTTGTCCT	NA	False	NA	NA	False	AATACA	-19	NA	85110887	85110661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_85110700_85110900
ENSMUSG00000033739.9_0	chr17	+	1201	2	FSM	ENSMUSG00000033739.9	ENSMUST00000036720.9	1270	2	69	0	-8	0	multi-exon	FALSE	canonical	3	34	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTGGTCTGTGTTGTG	7428	False	NA	4	True	ATTAAA	-17	NA	34863806	34865298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34863928_34864218
ENSMUSG00000033751.6_1	chr8	+	721	2	FSM	ENSMUSG00000033751.6	ENSMUST00000036734.6	2494	2	760	1013	760	-1013	multi-exon	FALSE	canonical	3	736	junction_1	0	298	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACATTCTCCCTCAAGTT	3434	False	NA	30	True	AATAAA	-25	NA	85558910	85561098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85559270_85560736
ENSMUSG00000033752.8_0	chr3	-	475	4	ISM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	39288	-1	39288	1	3prime_fragment	FALSE	canonical	3	187	junction_3	28.9635786616379	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTCTCCTCTTTTTGGT	NA	False	NA	NA	False	AATAAA	-16	NA	84023805	83995238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733
ENSMUSG00000033752.8_1	chr3	-	837	8	FSM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	37	1	37	-1	multi-exon	FALSE	canonical	3	187	junction_3	22.7497476998793	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCCTTCTCCTCTTTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	84063056	83995240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
ENSMUSG00000033752.8_3	chr3	-	754	7	NIC	ENSMUSG00000033752.8	novel	875	8	NA	NA	38	-8	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	79.9112354775945	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGGATGTCCTTCTCCT	NA	False	NA	NA	False	AATAAA	-7	NA	84063055	83995247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_83995482_84000861_84000907_84012241_84012357_84041324_84041474_84045475_84045534_84049005_84049072_84062968
ENSMUSG00000033752.8_4	chr3	-	184	1	ISM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	67660	10	67660	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATAAGGATGTCCTTCTC	NA	False	NA	NA	False	AATAAA	-5	NA	83995433	83995249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_83995200_83995400
ENSMUSG00000033752.8_6	chr3	-	325	3	ISM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	50804	10	50804	-10	3prime_fragment	FALSE	canonical	3	232	junction_2	12.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATAAGGATGTCCTTCTC	NA	False	NA	NA	False	AATAAA	-5	NA	84012289	83995249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_83995482_84000861_84000907_84012241
ENSMUSG00000033752.8_9	chr3	-	697	7	NIC	ENSMUSG00000033752.8	novel	875	8	NA	NA	63	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_2	82.0137183646736	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063030	83995239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_83995482_84000861_84000907_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
ENSMUSG00000033760.18_0	chr19	+	1882	1	NIC	ENSMUSG00000033760.18	novel	1606	5	NA	NA	431	-1484	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4807363	4809245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_4807400_4809200
ENSMUSG00000033760.18_1	chr19	+	1798	4	FSM	ENSMUSG00000033760.18	ENSMUST00000036744.8	1783	4	-19	4	9	0	multi-exon	FALSE	canonical	3	32	junction_3	20.1163283594862	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATCTTTTCTTAACTGAG	NA	False	NA	NA	False	AATAAA	-13	NA	4806579	4815964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4806690_4807273_4807698_4812004_4812676_4815371
ENSMUSG00000033760.18_10	chr19	+	1896	3	FSM	ENSMUSG00000033760.18	ENSMUST00000183008.2	1211	3	-28	-657	-7	16	multi-exon	FALSE	canonical	1	3	junction_2	39	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAACGAGTGCTGTTTT	NA	False	NA	NA	False	AATAAA	-34	NA	4806563	4811386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4806690_4807273_4807698_4810040
ENSMUSG00000033760.18_2	chr19	+	1846	2	FSM	ENSMUSG00000033760.18	ENSMUST00000182065.2	4194	2	-13	2361	9	-1720	multi-exon	FALSE	canonical	3	81	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGCAACCACGATTGCT	NA	False	NA	NA	False	AATAAA	-26	NA	4806579	4809009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4806690_4807273
ENSMUSG00000033760.18_3	chr19	+	4489	3	FSM	ENSMUSG00000033760.18	ENSMUST00000182821.8	1443	3	9	-3055	9	-5	multi-exon	FALSE	canonical	3	52	junction_2	14.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTTAATCTTTTCTTAA	NA	False	NA	NA	False	AATAAA	-8	NA	4806579	4815959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4806690_4807273_4807698_4812004
ENSMUSG00000033760.18_5	chr19	+	1421	3	ISM	ENSMUSG00000033760.18	ENSMUST00000036744.8	1783	4	944	2	610	-2	3prime_fragment	FALSE	canonical	3	32	junction_2	10	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTTCTTAACTGAGTG	NA	False	NA	NA	False	AATAAA	-15	NA	4807542	4815966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4807698_4812004_4812676_4815371
ENSMUSG00000033762.9_18	chr15	-	1505	8	ISM	ENSMUSG00000033762.9	ENSMUST00000036852.9	3896	22	4741	4	4418	3	3prime_fragment	FALSE	canonical	3	46	junction_7	19.7008235609477	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTGCTTTCTGGTAAC	NA	False	NA	-9	True	AATAAA	-15	NA	76589992	76587756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_76588066_76588153_76588263_76588442_76588597_76588675_76588857_76588933_76589104_76589186_76589317_76589390_76589644_76589793
ENSMUSG00000033762.9_3	chr15	-	3894	22	FSM	ENSMUSG00000033762.9	ENSMUST00000036852.9	3896	22	-5	7	-5	0	multi-exon	FALSE	canonical	3	37	junction_12	16.3579572820053	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTATGTGCTTTCTGGT	NA	False	NA	-12	True	AATAAA	-12	NA	76594738	76587759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76588066_76588153_76588263_76588442_76588597_76588675_76588857_76588933_76589104_76589186_76589317_76589390_76589644_76589793_76590057_76590145_76590288_76590358_76590539_76590616_76590806_76590882_76590967_76591236_76591374_76591451_76591545_76592324_76592424_76592526_76592635_76592734_76592862_76593001_76593752_76593967_76594109_76594300_76594399_76594477_76594512_76594592
ENSMUSG00000033762.9_7	chr15	-	1139	6	ISM	ENSMUSG00000033762.9	ENSMUST00000036852.9	3896	22	5328	7	5005	0	intron_retention	FALSE	canonical	3	55	junction_4	15.4867685460848	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTATGTGCTTTCTGGT	NA	False	NA	-12	True	AATAAA	-12	NA	76589405	76587759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_76588066_76588153_76588263_76588442_76588597_76588675_76588857_76588933_76589104_76589186
ENSMUSG00000033763.15_0	chr8	+	4727	14	FSM	ENSMUSG00000033763.15	ENSMUST00000052457.15	4717	14	-21	11	-21	-11	multi-exon	FALSE	canonical	3	80	junction_11	11.3147544665827	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTAGTTAACGCCCCGGC	NA	False	NA	-4	True	AATAAA	-6	NA	111448086	111468021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_111448423_111452825_111452888_111453006_111453081_111453744_111453830_111453935_111454028_111454108_111454184_111455359_111455518_111455801_111455910_111456654_111456753_111458689_111458811_111463777_111463853_111464203_111464381_111464561_111464728_111464921
ENSMUSG00000033763.15_2	chr8	+	4595	14	NIC	ENSMUSG00000033763.15	novel	4717	14	NA	NA	-14	-232	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	23.3298954920214	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGTATTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	111448093	111467800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_111448423_111452825_111452888_111453006_111453081_111453744_111453830_111453935_111454028_111454108_111454184_111455359_111455518_111455801_111455910_111456654_111456753_111458593_111458811_111463777_111463853_111464203_111464381_111464561_111464728_111464921
ENSMUSG00000033763.15_20	chr8	+	3338	3	ISM	ENSMUSG00000033763.15	ENSMUST00000144041.8	3225	14	11956	-1459	565	-6	3prime_fragment	FALSE	canonical	3	84	junction_2	6.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTAACGCCCCGGCTTCCT	NA	False	NA	1	True	AATAAA	-11	NA	111464313	111468026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111464381_111464561_111464728_111464921
ENSMUSG00000033763.15_22	chr8	+	2272	1	ISM	ENSMUSG00000033763.15	ENSMUST00000052457.15	4717	14	17647	6	2006	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTAACGCCCCGGCTTCCT	NA	False	NA	1	True	AATAAA	-11	NA	111465754	111468026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111465800_111468000
ENSMUSG00000033763.15_5	chr8	+	1420	10	ISM	ENSMUSG00000033763.15	ENSMUST00000052457.15	4717	14	-22	9012	-22	378	5prime_fragment	FALSE	canonical	3	89	junction_6	9.56975688894866	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCATTGGTTTATCCAA	NA	False	NA	NA	False	CATAAA	-14	NA	111448085	111459020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111448423_111452825_111452888_111453006_111453081_111453744_111453830_111453935_111454028_111454108_111454184_111455359_111455518_111455801_111455910_111456654_111456753_111458689
ENSMUSG00000033767.15_14	chr3	-	4963	35	NIC	ENSMUSG00000033767.15	novel	5555	35	NA	NA	1	4	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	16.8193125114079	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTTTATTTTTGCTTT	NA	False	NA	-22	True	AATAAA	-18	NA	83947443	83805511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_83805921_83806483_83806624_83807633_83807723_83808652_83808774_83812339_83812423_83813653_83813733_83816458_83816642_83817675_83817816_83820570_83820696_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
ENSMUSG00000033767.15_19	chr3	-	4803	34	NIC	ENSMUSG00000033767.15	novel	4774	34	NA	NA	-1	1	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	18.2607880991439	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTGTTTATTTTTGC	NA	False	NA	-25	True	AATAAA	-15	NA	83947469	83805514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_83805921_83806483_83806624_83807633_83807723_83808652_83808774_83812339_83812423_83813653_83813733_83817675_83817816_83820570_83820696_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
ENSMUSG00000033767.15_2	chr3	-	4978	35	FSM	ENSMUSG00000033767.15	ENSMUST00000191758.6	5555	35	24	553	10	1	multi-exon	FALSE	canonical	3	49	junction_6	12.592082974362	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTGTTTATTTTTGC	NA	False	NA	-25	True	AATAAA	-15	NA	83947458	83805514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_83805921_83806483_83806624_83807633_83807726_83808652_83808774_83812339_83812423_83813653_83813733_83816458_83816642_83817675_83817816_83820570_83820696_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
ENSMUSG00000033767.15_38	chr3	-	4957	35	NIC	ENSMUSG00000033767.15	novel	5555	35	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	2	5	junction_9	18.2667896888406	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTTTGTTTATTTTTG	NA	False	NA	-26	True	AATAAA	-14	NA	83947441	83805515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_83805921_83806483_83806624_83807633_83807726_83808652_83808774_83812339_83812423_83813653_83813733_83816458_83816642_83817675_83817816_83820570_83820693_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
ENSMUSG00000033767.15_4	chr3	-	4799	34	NIC	ENSMUSG00000033767.15	novel	5555	35	NA	NA	7	2	combination_of_known_junctions	FALSE	canonical	3	28	junction_6	14.3287519105165	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTGTTTATTTTTGCT	NA	False	NA	-24	True	AATAAA	-16	NA	83947461	83805513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_83805921_83806483_83806624_83807633_83807726_83808652_83808774_83812339_83812423_83813653_83813733_83817675_83817816_83820570_83820696_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
ENSMUSG00000033768.18_0	chr19	+	2530	9	ISM	ENSMUSG00000033768.18	ENSMUST00000235714.2	5001	21	760	49816	37	-1	5prime_fragment	FALSE	canonical	1	1	junction_2	2.28787565221539	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTCTTGGCCCAGTTTTG	NA	False	NA	NA	False	NA	NA	NA	6478712	6532725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6478809_6493660_6493679_6498284_6498315_6500557_6500630_6505008_6505311_6522287_6522450_6523347_6523787_6531139_6531527_6531701
ENSMUSG00000033768.18_1	chr19	+	3204	6	NIC	ENSMUSG00000033768.18	novel	5505	20	NA	NA	-35	-2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	2.33238075793812	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCTCTTGGCCCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	6477917	6532724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6478809_6505008_6505311_6522287_6522450_6523347_6523787_6531139_6531527_6531701
ENSMUSG00000033768.18_10	chr19	+	2021	1	NIC	ENSMUSG00000033768.18	novel	6667	23	NA	NA	13961	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAGAAAACAAAAACTT	NA	False	NA	-16	True	AAAACA	-23	NA	6581195	6583216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6581200_6583200
ENSMUSG00000033768.18_2	chr19	+	2503	8	NIC	ENSMUSG00000033768.18	novel	5001	21	NA	NA	36	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	2.44114392723358	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTGGCCCAGTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	6478711	6532727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6478809_6493660_6493679_6500557_6500630_6505008_6505311_6522287_6522450_6523347_6523787_6531139_6531527_6531701
ENSMUSG00000033768.18_8	chr19	+	2521	4	ISM	ENSMUSG00000033768.18	ENSMUST00000113458.8	3503	7	15811	1	-3566	0	3prime_fragment	FALSE	canonical	1	1	junction_1	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTCCTGTGTAGTTTGT	NA	False	NA	14	True	AAAAAG	-24	NA	6563668	6583246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_6563836_6566952_6567279_6569278_6569358_6581297
ENSMUSG00000033769.17_0	chr6	-	5388	22	FSM	ENSMUSG00000033769.17	ENSMUST00000160197.6	5439	22	44	7	-1	-7	multi-exon	FALSE	canonical	3	201	junction_13	26.9684454901315	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCCACTGTGTTGTCTT	NA	False	NA	-9	True	ATTAAA	-23	NA	85046451	84595475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_84598494_84602106_84602220_84723882_84723957_84768222_84768365_84812022_84812203_84820990_84821126_84825747_84825860_84828832_84828943_84830558_84830665_84831682_84831781_84832456_84832529_84835369_84835491_84837154_84837202_84837616_84837701_84867498_84867568_84885094_84885272_84966306_84966512_84980029_84980076_84980176_84980268_84981970_84982019_84988299_84988466_85046277
ENSMUSG00000033769.17_12	chr6	-	5221	21	NIC	ENSMUSG00000033769.17	novel	5439	22	NA	NA	0	-7	combination_of_known_junctions	TRUE	canonical	3	10	junction_20	52.9942213830904	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCCACTGTGTTGTCTT	NA	False	NA	-9	True	ATTAAA	-23	NA	85046450	84595475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_84598494_84602106_84602220_84723882_84723957_84768222_84768365_84812022_84812203_84820990_84821126_84825747_84825860_84828832_84828943_84830558_84830665_84831682_84831781_84832456_84832529_84835369_84835491_84837154_84837202_84837616_84837701_84867498_84867568_84885094_84885272_84966306_84966512_84980029_84980076_84980176_84980268_84981970_84982019_85046277
ENSMUSG00000033769.17_3	chr6	-	1748	1	ISM	ENSMUSG00000033769.17	ENSMUST00000160197.6	5439	22	449272	7	273747	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCCACTGTGTTGTCTT	NA	False	NA	-9	True	ATTAAA	-23	NA	84597223	84595475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_84595500_84597200
ENSMUSG00000033770.14_0	chr4	-	974	7	ISM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	8100	1	4723	-1	3prime_fragment	FALSE	canonical	3	15	junction_6	7.88810637746615	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACTGTTCACCCATCTT	NA	False	NA	0	True	AATAAA	-19	NA	141117415	141111921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627_141116842_141117387
ENSMUSG00000033770.14_1	chr4	-	1738	13	ISM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	3627	1	250	-1	3prime_fragment	FALSE	canonical	1	1	junction_10	15.3539263888934	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACTGTTCACCCATCTT	NA	False	NA	0	True	AATAAA	-19	NA	141121888	141111921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627_141116842_141117387_141117499_141117652_141117723_141118656_141118831_141119083_141119169_141119835_141119938_141120051_141120137_141121723
ENSMUSG00000033770.14_3	chr4	-	1103	6	ISM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	8515	3	5138	-3	3prime_fragment	FALSE	canonical	3	33	junction_5	1.6	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCACTGTTCACCCATC	NA	False	NA	-2	True	AATAAA	-17	NA	141117000	141111923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627
ENSMUSG00000033773.15_2	chr5	+	2276	13	FSM	ENSMUSG00000033773.15	ENSMUST00000065422.12	2268	13	-12	4	2	-4	multi-exon	TRUE	canonical	3	138	junction_1	12.1951720866178	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCACTTTTTCAGAAGCT	NA	False	NA	22	True	AATAAA	-15	NA	107745588	107809700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
ENSMUSG00000033773.15_28	chr5	+	1417	6	ISM	ENSMUSG00000033773.15	ENSMUST00000065422.12	2268	13	22353	8	22106	-8	3prime_fragment	FALSE	canonical	3	138	junction_4	15.3310143173894	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAGCCACTTTTTCAGA	NA	False	NA	18	True	AATAAA	-11	NA	107767953	107809696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
ENSMUSG00000033773.15_3	chr5	+	1209	7	ISM	ENSMUSG00000033773.15	ENSMUST00000112654.8	2914	12	11	24121	-7	11813	5prime_fragment	FALSE	canonical	3	138	junction_1	9.8952850725316	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCAGCTTTTCATTTATT	NA	False	NA	NA	False	TATAAA	-15	NA	107745593	107766667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006
ENSMUSG00000033781.8_0	chr13	+	2349	6	FSM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	51	2053	-6	1283	multi-exon	FALSE	canonical	3	52	junction_4	6.61513416341649	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAAGTTTGTCCCTGTGTC	NA	False	NA	1	True	AATAAA	-10	NA	3684082	3701769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_3684176_3692064_3692253_3693474_3693626_3694915_3695051_3699318_3699511_3700179
ENSMUSG00000033781.8_1	chr13	+	3569	5	NIC	ENSMUSG00000033781.8	novel	4453	6	NA	NA	-4	1283	intron_retention	FALSE	canonical	3	52	junction_3	7.22841614740048	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAAGTTTGTCCCTGTGTC	NA	False	NA	1	True	AATAAA	-10	NA	3684084	3701769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_3684176_3692064_3693626_3694915_3695051_3699318_3699511_3700179
ENSMUSG00000033781.8_11	chr13	+	1898	3	ISM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	10903	2053	10836	1283	3prime_fragment	FALSE	canonical	3	52	junction_1	9.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAAGTTTGTCCCTGTGTC	NA	False	NA	1	True	AATAAA	-10	NA	3694934	3701769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_3695051_3699318_3699511_3700179
ENSMUSG00000033781.8_5	chr13	+	888	1	ISM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	16853	2050	16786	1286	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGTCCCTGTGTCTTA	NA	False	NA	4	True	AATAAA	-13	NA	3700884	3701772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_3700900_3701800
ENSMUSG00000033781.8_6	chr13	+	2049	4	NIC	ENSMUSG00000033781.8	novel	4453	6	NA	NA	12	1283	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	29.5559732635479	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAAGTTTGTCCCTGTGTC	NA	False	NA	1	True	AATAAA	-10	NA	3684043	3701769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_3684176_3694915_3695051_3699318_3699511_3700179
ENSMUSG00000033790.12_0	chr7	+	2382	13	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	8	11367	5	-2044	5prime_fragment	FALSE	canonical	3	83	junction_7	5.69356361751291	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGATAAAATTCATTCT	NA	False	NA	NA	False	AATAAA	-17	NA	55443920	55465480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607
ENSMUSG00000033790.12_1	chr7	+	3637	23	FSM	ENSMUSG00000033790.12	ENSMUST00000032627.5	3905	23	35	233	-2	-2	multi-exon	FALSE	canonical	3	52	junction_19	13.708973353728	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTTTCTACCTATTTCA	NA	False	NA	13	True	AATAAA	-16	NA	55443936	55481192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725_55471847_55473267_55473447_55475327_55475454_55475980_55476070_55479078_55479180_55480589
ENSMUSG00000033790.12_13	chr7	+	2328	14	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	30	10070	4	-747	5prime_fragment	FALSE	canonical	3	83	junction_7	5.82384407099929	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACCGTGTATAGCACTAA	NA	False	NA	NA	False	AATAAA	-17	NA	55443942	55466777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205
ENSMUSG00000033790.12_18	chr7	+	2195	11	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	38	17554	12	601	5prime_fragment	FALSE	canonical	3	83	junction_7	5.8172158288996	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTCTTGCTTATTTGG	NA	False	NA	NA	False	AATAAA	-12	NA	55443950	55459293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258
ENSMUSG00000033790.12_3	chr7	+	2596	18	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	-6	4974	5	3085	5prime_fragment	FALSE	canonical	3	67	junction_15	9.6774986044305	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGATTTTGGTCCTGGA	NA	False	NA	-4	True	AATAAA	-7	NA	55443906	55471873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725
ENSMUSG00000033792.13_0	chrX	+	7854	23	FSM	ENSMUSG00000033792.13	ENSMUST00000055941.7	4866	23	-46	-2942	0	2942	multi-exon	FALSE	canonical	2	29	junction_4	14.4839609212032	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATGTTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	105070881	105171474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_105070986_105113375_105113514_105128719_105129210_105129694_105130421_105131940_105132124_105135689_105135854_105138458_105138621_105140382_105140460_105140995_105141222_105142391_105142626_105144132_105144225_105145465_105145594_105145952_105146108_105146317_105146453_105148752_105148948_105150789_105150973_105153366_105153584_105158695_105158843_105161857_105162001_105163840_105164045_105165195_105165314_105166948_105167052_105167944
ENSMUSG00000033792.13_2	chrX	+	7852	23	FSM	ENSMUSG00000033792.13	ENSMUST00000113557.8	4900	23	-1	-2951	-1	2942	multi-exon	TRUE	canonical	2	41	junction_4	12.997138909572	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATGTTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	105070880	105171474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_105070986_105113375_105113514_105128719_105129210_105129694_105130421_105131943_105132124_105135689_105135854_105138458_105138621_105140382_105140460_105140995_105141222_105142391_105142626_105144132_105144225_105145465_105145594_105145952_105146108_105146317_105146453_105148752_105148948_105150789_105150973_105153366_105153584_105158695_105158843_105161857_105162001_105163840_105164045_105165195_105165314_105166948_105167052_105167944
ENSMUSG00000033792.13_24	chrX	+	4456	7	ISM	ENSMUSG00000033792.13	ENSMUST00000055941.7	4866	23	82445	-2942	2835	2942	3prime_fragment	FALSE	canonical	3	62	junction_5	8.82546819658248	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATGTTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	105153372	105171474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_105153584_105158695_105158843_105161857_105162001_105163840_105164045_105165195_105165314_105166948_105167052_105167944
ENSMUSG00000033792.13_28	chrX	+	3740	3	ISM	ENSMUSG00000033792.13	ENSMUST00000055941.7	4866	23	94277	-2940	6362	2940	3prime_fragment	FALSE	canonical	3	62	junction_1	14	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAAAATGTTGTCA	NA	False	NA	NA	False	NA	NA	NA	105165204	105171472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_105165314_105166948_105167052_105167944
ENSMUSG00000033793.13_0	chr1	+	1912	14	FSM	ENSMUSG00000033793.13	ENSMUST00000044369.13	2049	14	53	84	1	26	multi-exon	FALSE	canonical	3	428	junction_7	59.3277926628703	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGTTCTTAAATTTTG	NA	False	NA	14	True	ATTAAA	-14	NA	5153355	5232668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
ENSMUSG00000033793.13_1	chr1	+	1858	13	FSM	ENSMUSG00000033793.13	ENSMUST00000192698.3	1811	13	-21	-26	1	26	multi-exon	FALSE	canonical	3	60	junction_6	140.296783640966	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGTTCTTAAATTTTG	NA	False	NA	14	True	ATTAAA	-14	NA	5153355	5232668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
ENSMUSG00000033793.13_3	chr1	+	2241	14	NIC	ENSMUSG00000033793.13	novel	2049	14	NA	NA	-3	26	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	139.358420021071	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGTTCTTAAATTTTG	NA	False	NA	14	True	ATTAAA	-14	NA	5153373	5232668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_5153849_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
ENSMUSG00000033799.11_14	chr13	-	5737	9	ISM	ENSMUSG00000033799.11	ENSMUST00000096069.5	8338	20	26336	8	319	-8	3prime_fragment	FALSE	canonical	3	53	junction_7	11.346117177255	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCAGTCATTTGTAGT	NA	False	NA	NA	False	AATAAA	-7	NA	3634772	3616042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_3616668_3616917_3617033_3617435_3617618_3618751_3618858_3619487_3619642_3620311_3620438_3623486_3627201_3631751_3632194_3634499
ENSMUSG00000033799.11_17	chr13	-	3445	14	ISM	ENSMUSG00000033799.11	ENSMUST00000096069.5	8338	20	-86	11115	-86	-6247	5prime_fragment	FALSE	canonical	3	47	junction_4	7.05347285313702	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTTGTGCTGTCTGGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	3661194	3627149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_3627201_3631751_3632194_3634499_3635374_3638297_3638535_3639940_3640649_3644130_3644194_3644292_3644366_3645496_3645601_3646776_3646878_3649651_3649752_3649836_3649857_3649938_3650063_3650191_3650335_3660789
ENSMUSG00000033799.11_2	chr13	-	3540	7	ISM	ENSMUSG00000033799.11	ENSMUST00000222909.2	5193	9	9380	-540	979	-1	3prime_fragment	FALSE	canonical	3	65	junction_1	9.06764700582363	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATTTGTAGTCTGTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	3625711	3616035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_3616668_3616917_3617033_3617435_3617618_3618751_3618858_3619487_3619642_3620311_3620438_3623486
ENSMUSG00000033799.11_28	chr13	-	8087	20	NIC	ENSMUSG00000033799.11	novel	8338	20	NA	NA	-87	-8	combination_of_known_junctions	FALSE	canonical	2	7	junction_7	17.621442490814	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCAGTCATTTGTAGT	NA	False	NA	NA	False	AATAAA	-7	NA	3661195	3616042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_3616668_3616917_3617033_3617435_3617618_3618751_3618858_3619487_3619642_3620311_3620438_3623486_3627201_3632081_3632194_3634499_3635374_3638297_3638535_3639940_3640649_3644130_3644194_3644292_3644366_3645496_3645601_3646776_3646878_3649651_3649752_3649836_3649857_3649938_3650063_3650191_3650335_3660789
ENSMUSG00000033799.11_4	chr13	-	8414	20	FSM	ENSMUSG00000033799.11	ENSMUST00000096069.5	8338	20	-84	8	-84	-8	multi-exon	FALSE	canonical	3	47	junction_10	12.4522356123369	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCAGTCATTTGTAGT	NA	False	NA	NA	False	AATAAA	-7	NA	3661192	3616042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_3616668_3616917_3617033_3617435_3617618_3618751_3618858_3619487_3619642_3620311_3620438_3623486_3627201_3631751_3632194_3634499_3635374_3638297_3638535_3639940_3640649_3644130_3644194_3644292_3644366_3645496_3645601_3646776_3646878_3649651_3649752_3649836_3649857_3649938_3650063_3650191_3650335_3660789
ENSMUSG00000033799.11_5	chr13	-	6971	11	ISM	ENSMUSG00000033799.11	ENSMUST00000096069.5	8338	20	20779	1	-5238	-1	3prime_fragment	FALSE	canonical	3	47	junction_10	14.4308696896618	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATTTGTAGTCTGTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	3640329	3616035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_3616668_3616917_3617033_3617435_3617618_3618751_3618858_3619487_3619642_3620311_3620438_3623486_3627201_3631751_3632194_3634499_3635374_3638297_3638535_3639940
ENSMUSG00000033799.11_6	chr13	-	5279	8	ISM	ENSMUSG00000033799.11	ENSMUST00000096069.5	8338	20	29105	3	3088	-3	3prime_fragment	FALSE	canonical	3	53	junction_7	12.0407471461174	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCATTTGTAGTCTGTG	NA	False	NA	NA	False	AATAAA	-12	NA	3632003	3616037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_3616668_3616917_3617033_3617435_3617618_3618751_3618858_3619487_3619642_3620311_3620438_3623486_3627201_3631751
ENSMUSG00000033808.17_1	chr2	-	2876	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090042.12	2874	20	-9	7	0	-3	multi-exon	TRUE	canonical	0	0	junction_8	102.185508348021	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACTAGTGTCTCTCT	NA	False	NA	NA	False	TATAAA	-7	NA	120234559	120185799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204391_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ENSMUSG00000033808.17_3	chr2	-	2879	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090046.12	2897	20	11	7	0	-3	multi-exon	FALSE	canonical	0	0	junction_8	114.209531889923	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACTAGTGTCTCTCT	NA	False	NA	NA	False	TATAAA	-7	NA	120234559	120185799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204968_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ENSMUSG00000033809.16_1	chr16	-	1409	9	FSM	ENSMUSG00000033809.16	ENSMUST00000045918.15	1451	9	20	22	-1	0	multi-exon	FALSE	canonical	0	0	junction_2	107.475578621378	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTGTGCAGCATACATA	NA	False	NA	-9	True	AATAAA	-14	NA	20429498	20424222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429292
ENSMUSG00000033809.16_10	chr16	-	1309	8	FSM	ENSMUSG00000033809.16	ENSMUST00000123774.2	1308	8	-1	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_2	136.842975705734	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTGTGCAGCATACATA	NA	False	NA	-9	True	AATAAA	-14	NA	20429498	20424222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429292
ENSMUSG00000033813.16_0	chr1	+	2558	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	-14	3	-14	-3	multi-exon	TRUE	canonical	3	1526	junction_2	186.842443693696	2236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATACATGTTTTTTGTC	NA	False	NA	NA	False	AATAAA	-14	NA	4928022	4968125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
ENSMUSG00000033813.16_1	chr1	+	2553	10	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-12	-3	at_least_one_novel_splicesite	FALSE	canonical	3	330	junction_4	508.177450294338	412	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATACATGTTTTTTGTC	NA	False	NA	NA	False	AATAAA	-14	NA	4928024	4968125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959682_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
ENSMUSG00000033819.17_2	chr15	+	2625	11	FSM	ENSMUSG00000033819.17	ENSMUST00000037551.15	2692	11	64	3	32	1	multi-exon	FALSE	canonical	3	82	junction_1	16.1864140562386	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCTTCCCATGTGTCTC	NA	False	NA	19	True	GATAAA	-14	NA	76555878	76579116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76555963_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
ENSMUSG00000033819.17_35	chr15	+	2097	10	ISM	ENSMUSG00000033819.17	ENSMUST00000135388.3	2827	12	18970	2	88	2	3prime_fragment	FALSE	canonical	3	96	junction_3	12.1817511765918	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTTCCCATGTGTCTCA	NA	False	NA	20	True	GATAAA	-15	NA	76574816	76579117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
ENSMUSG00000033819.17_6	chr15	+	2796	12	FSM	ENSMUSG00000033819.17	ENSMUST00000135388.3	2827	12	29	2	29	2	multi-exon	TRUE	canonical	3	37	junction_1	32.5360575565374	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTTCCCATGTGTCTCA	NA	False	NA	20	True	GATAAA	-15	NA	76555875	76579117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76555963_76573527_76573695_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
ENSMUSG00000033826.11_58	chr17	+	4639	29	ISM	ENSMUSG00000033826.11	ENSMUST00000236647.2	13856	91	133993	1	230	0	3prime_fragment	TRUE	canonical	3	35	junction_11	14.2974951423996	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGCTCGCCTGTCTCTTC	4627	False	NA	23	True	ATTAAA	-14	NA	30988722	31094237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_30988844_30990770_30990890_30992502_30992607_30993919_30994097_30997980_30998149_30998696_30998913_31001357_31001496_31003036_31003165_31003980_31004153_31006118_31006275_31009800_31009957_31013606_31013790_31019457_31019564_31022036_31022290_31022966_31023158_31026178_31026301_31029233_31029353_31032001_31032205_31034605_31034680_31037033_31037187_31038092_31038249_31049746_31049864_31052529_31052632_31059526_31059688_31070601_31070759_31073774_31073928_31074878_31075069_31090285_31090408_31093815
ENSMUSG00000033826.11_6	chr17	+	6662	41	ISM	ENSMUSG00000033826.11	ENSMUST00000235507.2	13457	83	30	86436	13	-7	5prime_fragment	TRUE	canonical	3	31	junction_2	9.07689374180397	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAAAAGTAGCGTTTAGTC	230	False	NA	NA	False	AATAAA	-37	NA	30845939	30948851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942_30877045_30880959_30881107_30882271_30882470_30887247_30887325_30889585_30889686_30891213_30891334_30892753_30892890_30896060_30896249_30902604_30902686_30903104_30903222_30905356_30905477_30909154_30909291_30912922_30913036_30914083_30914191_30919363_30919437_30920818_30921006_30923628_30923826_30925358_30925486_30927264_30927501_30929475_30929581_30931246_30931361_30932007_30932071_30934453_30934555_30936737_30936876_30937800_30938042_30939972_30940173_30941872_30942027_30944055_30944220_30945759_30945863_30947136_30947242_30948054
ENSMUSG00000033826.11_65	chr17	+	3536	22	ISM	ENSMUSG00000033826.11	ENSMUST00000236647.2	13856	91	148368	0	4391	0	3prime_fragment	FALSE	canonical	3	35	junction_4	13.8859951634013	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTCGCCTGTCTCTTCC	1158	False	NA	24	True	ATTAAA	-15	NA	31003097	31094238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_31003165_31003980_31004153_31006118_31006275_31009800_31009957_31013606_31013790_31019457_31019564_31022036_31022290_31022966_31023158_31026178_31026301_31029233_31029353_31032001_31032205_31034605_31034680_31037033_31037187_31038092_31038249_31049746_31049864_31052529_31052632_31059526_31059688_31070601_31070759_31073774_31073928_31074878_31075069_31090285_31090408_31093815
ENSMUSG00000033826.11_68	chr17	+	3192	20	ISM	ENSMUSG00000033826.11	ENSMUST00000236647.2	13856	91	151494	0	7517	0	3prime_fragment	FALSE	canonical	3	35	junction_2	13.9029082830091	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTCGCCTGTCTCTTCC	4284	False	NA	24	True	ATTAAA	-15	NA	31006223	31094238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_31006275_31009800_31009957_31013606_31013790_31019457_31019564_31022036_31022290_31022966_31023158_31026178_31026301_31029233_31029353_31032001_31032205_31034605_31034680_31037033_31037187_31038092_31038249_31049746_31049864_31052529_31052632_31059526_31059688_31070601_31070759_31073774_31073928_31074878_31075069_31090285_31090408_31093815
ENSMUSG00000033826.11_70	chr17	+	2950	18	ISM	ENSMUSG00000033826.11	ENSMUST00000236647.2	13856	91	158910	2	-5711	-1	3prime_fragment	FALSE	canonical	3	38	junction_7	13.061472969178	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGCTCGCCTGTCTCTT	NA	False	NA	22	True	ATTAAA	-13	NA	31013639	31094236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_31013790_31019457_31019564_31022036_31022290_31022966_31023158_31026178_31026301_31029233_31029353_31032001_31032205_31034605_31034680_31037033_31037187_31038092_31038249_31049746_31049864_31052529_31052632_31059526_31059688_31070601_31070759_31073774_31073928_31074878_31075069_31090285_31090408_31093815
ENSMUSG00000033826.11_9	chr17	+	3440	20	ISM	ENSMUSG00000033826.11	ENSMUST00000235507.2	13457	83	33	131704	16	58	5prime_fragment	FALSE	canonical	3	31	junction_2	9.07494190819529	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGATTTGGGTCCTTTCCC	233	False	NA	NA	False	AATAAA	-21	NA	30845942	30903583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942_30877045_30880959_30881107_30882271_30882470_30887247_30887325_30889585_30889686_30891213_30891334_30892753_30892890_30896060_30896249_30902604_30902686_30903104
ENSMUSG00000033837.6_1	chr15	-	1688	3	FSM	ENSMUSG00000033837.6	ENSMUST00000037824.6	1365	3	70	-393	70	393	multi-exon	FALSE	canonical	3	304	junction_2	19.5	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTCCAAGTCTGGTATTG	NA	False	NA	-7	True	AGTAAA	-17	NA	76554078	76552031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76553341_76553428_76553534_76553804
ENSMUSG00000033837.6_3	chr15	-	1673	3	FSM	ENSMUSG00000033837.6	ENSMUST00000230207.2	507	3	-72	-1094	-72	394	multi-exon	FALSE	canonical	3	24	junction_2	159.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCCAAGTCTGGTATTGG	NA	False	NA	-6	True	AGTAAA	-18	NA	76554074	76552030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76553341_76553428_76553522_76553804
ENSMUSG00000033837.6_9	chr15	-	1066	1	Genic_Genomic	ENSMUSG00000033837.6	novel	NA	NA	NA	NA	906	394	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCCAAGTCTGGTATTGG	NA	False	NA	-6	True	AGTAAA	-18	NA	76553096	76552030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_76552000_76553100
ENSMUSG00000033845.14_1	chr1	-	768	5	FSM	ENSMUSG00000033845.14	ENSMUST00000130201.8	1894	5	3	1123	3	107	multi-exon	FALSE	canonical	3	144	junction_1	911.97762445139	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAAGTAAGAGGGAAACT	1652	False	NA	-34	True	NA	NA	NA	4855930	4844551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_4844740_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ENSMUSG00000033845.14_6	chr1	-	995	5	FSM	ENSMUSG00000033845.14	ENSMUST00000156816.7	4203	5	38	3170	-3	-4	multi-exon	FALSE	canonical	3	2059	junction_1	113.670576667843	864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTCACTGCTCAGGTCT	1658	False	NA	-14	True	ATTAAA	-18	NA	4855924	4846603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ENSMUSG00000033847.16_1	chr7	+	5805	16	FSM	ENSMUSG00000033847.16	ENSMUST00000108528.9	3390	16	-2417	2	-1405	-2	multi-exon	FALSE	canonical	0	0	junction_1	1.78138522878498	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGTATTGAATTATTTA	NA	False	NA	NA	False	CATAAA	-6	NA	13057174	13094591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_13059703_13063572_13063688_13063895_13064033_13069117_13069308_13071661_13071783_13073525_13073667_13074537_13074592_13076315_13076358_13077297_13077442_13077815_13077966_13078361_13078458_13079921_13080077_13082138_13082311_13090100_13090252_13090950_13091078_13093109
ENSMUSG00000033852.17_0	chr2	+	1355	8	FSM	ENSMUSG00000098789.8	ENSMUST00000044675.5	1373	8	17	1	-4	-1	multi-exon	FALSE	canonical	3	72	junction_5	32.3128836376389	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACACTTGTTCTCATGTTC	NA	False	NA	5	True	NA	NA	NA	119857980	119863074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
ENSMUSG00000033852.17_13	chr2	+	1257	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-4	-3	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	49.0736408087093	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACACTTGTTCTCATGT	NA	False	NA	3	True	NA	NA	NA	119857980	119863072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119862055_119862133_119862321_119862482_119862594
ENSMUSG00000033852.17_14	chr2	+	1428	8	ISM	ENSMUSG00000033852.17	ENSMUST00000162393.8	5092	27	7	10440	-4	-2400	5prime_fragment	FALSE	canonical	3	18	junction_5	45.292248289327	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACACTTGTTCTCATGTTC	NA	False	NA	5	True	NA	NA	NA	119857980	119863074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119861982_119862133_119862321_119862482_119862594
ENSMUSG00000033852.17_2	chr2	+	2416	4	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-4	-8	intron_retention	FALSE	canonical	3	85	junction_1	35.2167889254858	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTGATACACTTGTTCT	NA	False	NA	-2	True	NA	NA	NA	119857980	119863067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119858058_119860538_119860693_119860769_119862482_119862594
ENSMUSG00000033852.17_21	chr2	+	1716	6	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	85	junction_1	31.8094325633137	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACACTTGTTCTCATGTTC	NA	False	NA	5	True	NA	NA	NA	119857980	119863074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119862482_119862594
ENSMUSG00000033852.17_36	chr2	+	372	1	ISM	ENSMUSG00000033852.17	ENSMUST00000162393.8	5092	27	15145	24	10790	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATTTTTTTAAAAAGT	267	False	NA	NA	False	NA	NA	NA	119873118	119873490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119873100_119873500
ENSMUSG00000033852.17_7	chr2	+	1279	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-5	-1	combination_of_known_splicesites	FALSE	canonical	3	17	junction_5	49.2084568161025	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACACTTGTTCTCATGTTC	NA	False	NA	5	True	NA	NA	NA	119857979	119863074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862321_119862482_119862594
ENSMUSG00000033855.16_1	chr17	+	2468	2	FSM	ENSMUSG00000033855.16	ENSMUST00000137138.2	767	2	5	-1706	5	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAAAGAGGTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88905116	88944963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_88905170_88942548
ENSMUSG00000033855.16_3	chr17	+	4857	4	NIC	ENSMUSG00000033855.16	novel	357	3	NA	NA	4	-844	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAAATAGTTCTTGCTG	NA	False	NA	NA	False	ATTAAA	-6	NA	88905115	88955280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_88905170_88942548_88944511_88951765_88951969_88952642
ENSMUSG00000033857.13_0	chr11	+	2507	14	NIC	ENSMUSG00000033857.13	novel	4064	14	NA	NA	-4	3	combination_of_known_junctions	FALSE	canonical	3	25	junction_11	24.1545810765215	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAAAGGTGCTTCTTTT	NA	False	NA	9	True	CATAAA	-16	NA	118367781	118378602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_118367931_118369708_118369780_118369911_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377270_118377380_118377647_118377763_118377916
ENSMUSG00000033857.13_1	chr11	+	2504	14	FSM	ENSMUSG00000033857.13	ENSMUST00000135383.9	4064	14	127	1433	-4	3	multi-exon	FALSE	canonical	3	81	junction_11	10.2772224737595	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAAAGGTGCTTCTTTT	NA	False	NA	9	True	CATAAA	-16	NA	118367781	118378602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_118367931_118369708_118369780_118369911_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647_118377763_118377916
ENSMUSG00000033857.13_10	chr11	+	2476	14	FSM	ENSMUSG00000033857.13	ENSMUST00000171769.8	3807	14	24	1307	1	7	multi-exon	FALSE	canonical	2	6	junction_2	29.6532225814911	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGTGCTTCTTTTGAGA	NA	False	NA	13	True	CATAAA	-20	NA	118367809	118378606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_118367931_118369708_118369780_118369915_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647_118377763_118377916
ENSMUSG00000033860.14_0	chr3	+	1755	9	FSM	ENSMUSG00000033860.14	ENSMUST00000194175.2	1741	9	-2	-12	-2	12	multi-exon	FALSE	canonical	3	22	junction_4	1.69096865730859	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGTATATTTTTCTCATG	NA	False	NA	NA	False	AATAAA	-24	NA	82915165	82922024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444
ENSMUSG00000033860.14_1	chr3	+	1557	10	FSM	ENSMUSG00000033860.14	ENSMUST00000048486.13	1695	10	136	2	-1	-2	multi-exon	FALSE	canonical	3	22	junction_4	1.8324913891634	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGAGACATTCCGTGGC	NA	False	NA	NA	False	AATAAA	-14	NA	82915166	82922354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444_82921615_82922141
ENSMUSG00000033862.8_1	chr8	+	1621	13	FSM	ENSMUSG00000033862.8	ENSMUST00000036880.8	1642	13	21	0	2	0	multi-exon	FALSE	canonical	3	205	junction_10	22.2279853638006	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2146	False	NA	10	True	GATAAA	-11	NA	123951601	123958989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ENSMUSG00000033862.8_2	chr8	+	1585	13	FSM	ENSMUSG00000033862.8	ENSMUST00000213005.2	1580	13	-5	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	49.2958754190788	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2144	False	NA	10	True	GATAAA	-11	NA	123951599	123958989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123951670_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ENSMUSG00000033863.3_13	chr19	+	2472	1	ISM	ENSMUSG00000033863.3	ENSMUST00000036884.3	4486	2	24415	22	21997	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGATAAAGATTAAATTG	1316	False	NA	NA	False	AATAAA	-7	NA	23143004	23145476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_23143000_23145500
ENSMUSG00000033863.3_2	chr19	+	3526	2	Fusion	ENSMUSG00000033863.3_ENSMUSG00000044387.6	novel	414	2	NA	NA	-36	-17	multi-exon	FALSE	canonical	3	42	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGATTAAATTGTTCCA	NA	False	NA	NA	False	AATAAA	-12	NA	23112227	23145481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr19_+_23112319_23142046
ENSMUSG00000033863.3_4	chr19	+	4465	2	FSM	ENSMUSG00000033863.3	ENSMUST00000036884.3	4486	2	-10	31	-10	-31	multi-exon	FALSE	canonical	3	482	junction_1	0	1085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAATAAATGATAAAG	NA	False	NA	NA	False	NA	NA	NA	23118579	23145467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_23119624_23142046
ENSMUSG00000033871.15_0	chr18	-	3609	12	FSM	ENSMUSG00000033871.15	ENSMUST00000075299.13	3656	12	20	27	-11	-27	multi-exon	FALSE	canonical	3	29	junction_9	7.10022697809696	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAAAAAAC	3313	False	NA	NA	False	AAAAAG	-10	NA	61533482	61431233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_61431855_61432656_61432812_61435689_61435812_61437778_61437855_61440277_61441086_61442103_61442166_61442716_61442754_61443477_61444580_61445224_61445342_61448807_61449021_61456205_61456380_61533360
ENSMUSG00000033871.15_5	chr18	-	3480	11	NIC	ENSMUSG00000033871.15	novel	3656	12	NA	NA	1	-27	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	14.6982992213385	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAAAAAAC	3325	False	NA	NA	False	AAAAAG	-10	NA	61533470	61431233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_61431855_61432656_61432812_61435689_61435812_61437778_61437855_61440277_61441086_61442103_61442166_61442716_61442754_61443477_61444580_61448807_61449021_61456205_61456380_61533360
ENSMUSG00000033880.12_0	chr11	-	2160	6	FSM	ENSMUSG00000033880.12	ENSMUST00000043722.10	2330	6	169	1	-51	-1	multi-exon	TRUE	canonical	1	1	junction_1	1.85472369909914	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAAGTTTGTTCATCCATA	9875	False	NA	NA	False	ATTAAA	-17	NA	118292749	118283577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_118284949_118287416_118287670_118288946_118289079_118289205_118289398_118290553_118290628_118292611
ENSMUSG00000033882.16_1	chr3	-	3620	6	NIC	ENSMUSG00000033882.16	novel	2115	5	NA	NA	-38	701	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	1.67332005306815	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTAATGTGTGTTTTGTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	82783828	82743833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_82745767_82749780_82749841_82771211_82771995_82772511_82772980_82773792_82773955_82783614
ENSMUSG00000033883.12_0	chr3	+	2658	4	FSM	ENSMUSG00000033883.12	ENSMUST00000197653.5	6689	4	75	3956	-70	3712	multi-exon	FALSE	canonical	3	49	junction_1	1.4142135623731	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAACCGGTTCTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	36205240	36220535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_36205345_36213670_36213798_36216780_36216877_36218204
ENSMUSG00000033883.12_2	chr3	+	4782	5	NNC	ENSMUSG00000033883.12	novel	6689	4	NA	NA	-71	-1632	at_least_one_novel_splicesite	FALSE	non_canonical	3	20	junction_4	13.0479883506999	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAAAAGAGAACAGTTC	NA	False	NA	NA	False	AATAAA	-13	NA	36205239	36222852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_36205345_36213670_36213798_36216780_36216877_36218204_36220607_36220800
ENSMUSG00000033883.12_4	chr3	+	4920	2	NNC	ENSMUSG00000033883.12	novel	6503	3	NA	NA	5686	-14	at_least_one_novel_splicesite	FALSE	non_canonical	3	20	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACGTAATTTTAAAAAG	NA	False	NA	7	True	NA	NA	NA	36219356	36224470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_36220607_36220800
ENSMUSG00000033883.12_5	chr3	+	2068	1	ISM	ENSMUSG00000033883.12	ENSMUST00000197653.5	6689	4	13548	3710	5043	-3703	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAATAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36218713	36220781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_36218700_36220800
ENSMUSG00000033883.12_6	chr3	+	2857	1	ISM	ENSMUSG00000033883.12	ENSMUST00000197653.5	6689	4	16462	7	7957	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGATATACTACTATTA	NA	False	NA	21	True	AATAAA	-12	NA	36221627	36224484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_36221600_36224500
ENSMUSG00000033885.16_0	chr14	-	2790	18	FSM	ENSMUSG00000033885.16	ENSMUST00000036682.9	2812	18	13	9	1	-3	multi-exon	FALSE	canonical	3	68	junction_2	18.5091392369855	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAAAGTATGTTGTAGCTT	NA	False	NA	-9	True	AATAAA	-8	NA	14371549	14304664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_14305839_14314427_14314488_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
ENSMUSG00000033885.16_2	chr14	-	2795	18	FSM	ENSMUSG00000033885.16	ENSMUST00000225653.2	2765	18	-32	2	0	-2	multi-exon	TRUE	canonical	3	52	junction_2	21.2781870861862	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAAGTATGTTGTAGCTTT	NA	False	NA	-8	True	AATAAA	-9	NA	14371550	14304663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_14305839_14314427_14314491_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
ENSMUSG00000033900.14_1	chr3	+	6112	14	FSM	ENSMUSG00000033900.14	ENSMUST00000091014.10	6218	14	103	3	5	-3	multi-exon	TRUE	canonical	0	0	junction_6	2.99111109157286	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTTGGTAACTGACGTT	NA	False	NA	2	True	AATAAA	-14	NA	82265481	82302572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_82265563_82266281_82266432_82267196_82267282_82270597_82270922_82278485_82278710_82281414_82281509_82284229_82284475_82286243_82286315_82287384_82287554_82289200_82289291_82290514_82290677_82290822_82290969_82291151_82291285_82298434
ENSMUSG00000033900.14_5	chr3	+	3054	1	ISM	ENSMUSG00000033900.14	ENSMUST00000091014.10	6218	14	34135	8	12134	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCACAGTTTGGTAACTG	NA	False	NA	-3	True	AATAAA	-9	NA	82299513	82302567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_82299500_82302600
ENSMUSG00000033900.14_9	chr3	+	4477	4	ISM	ENSMUSG00000033900.14	ENSMUST00000195640.2	6162	14	25123	3	3237	-3	3prime_fragment	FALSE	canonical	2	3	junction_1	2.16024689946929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTTGGTAACTGACGTT	NA	False	NA	2	True	AATAAA	-14	NA	82290616	82302572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_82290677_82290822_82290969_82291151_82291285_82298434
ENSMUSG00000033902.13_1	chr2	+	7194	30	FSM	ENSMUSG00000033902.13	ENSMUST00000066058.8	6942	30	-266	14	-266	-14	multi-exon	FALSE	canonical	2	8	junction_8	4.52526268609031	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGCTAGCAAATTCTGA	3139	False	NA	34	True	AATAAA	-15	NA	119802913	119857875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119803650_119828962_119829055_119841223_119841287_119841482_119841541_119842413_119842585_119843073_119843212_119843392_119843576_119844099_119844261_119845103_119845294_119845823_119845971_119846173_119846350_119847260_119847353_119847620_119847747_119848061_119848133_119848236_119848359_119848779_119848856_119848968_119849081_119849402_119849467_119849706_119849842_119850032_119850170_119850358_119850415_119851564_119851802_119852211_119852379_119852570_119852717_119852817_119853013_119853176_119853262_119853512_119853797_119854023_119854621_119854998_119855085_119855584
ENSMUSG00000033902.13_19	chr2	+	3470	6	ISM	ENSMUSG00000033902.13	ENSMUST00000066058.8	6942	30	49703	17	341	-17	3prime_fragment	FALSE	canonical	3	12	junction_2	5.8172158288996	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAACCTGCTAGCAAATTC	8945	False	NA	31	True	AATAAA	-12	NA	119852882	119857872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119853013_119853176_119853262_119853512_119853797_119854023_119854621_119854998_119855085_119855584
ENSMUSG00000033902.13_21	chr2	+	3078	4	ISM	ENSMUSG00000033902.13	ENSMUST00000066058.8	6942	30	50411	116	1049	-116	3prime_fragment	FALSE	canonical	3	13	junction_3	6.23609564462324	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGTGGCGCCTGTCTCC	9653	False	NA	-68	True	NA	NA	NA	119853590	119857773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119853797_119854023_119854621_119854998_119855085_119855584
ENSMUSG00000033902.13_23	chr2	+	1429	1	ISM	ENSMUSG00000033902.13	ENSMUST00000066058.8	6942	30	53267	14	3905	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGCTAGCAAATTCTGA	NA	False	NA	34	True	AATAAA	-15	NA	119856446	119857875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119856400_119857900
ENSMUSG00000033904.17_0	chr7	+	5050	16	FSM	ENSMUSG00000033904.17	ENSMUST00000106557.8	5073	16	15	8	15	0	multi-exon	FALSE	canonical	3	57	junction_14	14.3789970288458	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAATCTTGTTGGATC	NA	False	NA	2	True	AATAAA	-12	NA	118311789	118336239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118331677_118332109_118332196_118334490
ENSMUSG00000033904.17_16	chr7	+	3418	12	ISM	ENSMUSG00000033904.17	ENSMUST00000038650.9	4716	14	7043	5	802	0	3prime_fragment	FALSE	canonical	3	57	junction_10	14.4055774322665	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAATCTTGTTGGATC	NA	False	NA	2	True	AATAAA	-12	NA	118321639	118336239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118331677_118332109_118332196_118334490
ENSMUSG00000033904.17_19	chr7	+	3690	11	NIC	ENSMUSG00000033904.17	novel	4716	14	NA	NA	442	-2	combination_of_known_junctions	FALSE	canonical	3	41	junction_10	18.3182968640646	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAGGAAATCTTGTTGGA	NA	False	NA	0	True	AATAAA	-10	NA	118321279	118336237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118331677_118334490
ENSMUSG00000033904.17_2	chr7	+	4968	15	NIC	ENSMUSG00000033904.17	novel	5073	16	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_14	17.3487634094403	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAATCTTGTTGGATC	NA	False	NA	2	True	AATAAA	-12	NA	118311785	118336239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118331677_118334490
ENSMUSG00000033904.17_25	chr7	+	1588	1	ISM	ENSMUSG00000033904.17	ENSMUST00000106557.8	5073	16	22877	8	5178	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAATCTTGTTGGATC	5192	False	NA	2	True	AATAAA	-12	NA	118334651	118336239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_118334700_118336200
ENSMUSG00000033904.17_5	chr7	+	5493	15	NIC	ENSMUSG00000033904.17	novel	5073	16	NA	NA	5	0	intron_retention	TRUE	canonical	3	69	junction_11	11.8960206002868	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAATCTTGTTGGATC	NA	False	NA	2	True	AATAAA	-12	NA	118311779	118336239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118332196_118334490
ENSMUSG00000033904.17_7	chr7	+	4869	14	NIC	ENSMUSG00000033904.17	novel	5073	16	NA	NA	50	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_13	26.7477809730499	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAATCTTGTTGGATC	NA	False	NA	2	True	AATAAA	-12	NA	118311824	118336239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118334490
ENSMUSG00000033906.6_0	chrX	-	2994	1	ISM	ENSMUSG00000033906.6	ENSMUST00000042070.6	5509	12	131097	5	131097	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATTTGTTGTGTCTTTT	NA	False	NA	NA	False	ATTAAA	-10	NA	103583573	103580579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_103580600_103583600
ENSMUSG00000033906.6_1	chrX	-	3727	12	FSM	ENSMUSG00000033906.6	ENSMUST00000042070.6	5509	12	202	1580	202	-1580	multi-exon	TRUE	canonical	3	93	junction_8	6.78841989185253	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTATTTCTGAGCAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	103714468	103582154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_103584775_103588433_103588511_103604290_103604395_103607426_103607554_103609307_103609441_103615259_103615381_103616110_103616144_103617774_103617845_103631906_103632028_103641697_103641793_103676189_103676217_103714269
ENSMUSG00000033906.6_5	chrX	-	3183	11	NIC	ENSMUSG00000033906.6	novel	5509	12	NA	NA	262	-1943	combination_of_known_splicesites	FALSE	canonical	1	5	junction_8	30.7579258078304	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCTATTCTTGTTTTAG	NA	False	NA	NA	False	AATAAA	-34	NA	103714408	103582517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_103584775_103588433_103588511_103604290_103604395_103607426_103607554_103609307_103609441_103615259_103615381_103616110_103616144_103617774_103617845_103641697_103641793_103676189_103676217_103714269
ENSMUSG00000033909.18_1	chr11	-	3436	8	ISM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	21387	6	-2796	-3	3prime_fragment	FALSE	canonical	3	124	junction_6	25.3707207108461	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATACCTTTCTGTGTCTG	NA	False	NA	-10	True	AATAAA	-19	NA	118159670	118150482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369
ENSMUSG00000033909.18_15	chr11	-	1487	6	FSM	ENSMUSG00000033909.18	ENSMUST00000141647.8	3815	6	1128	1200	1128	0	multi-exon	FALSE	canonical	3	141	junction_5	19.8655480669424	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGGCTACCAGTAGCAA	NA	False	NA	-15	True	GATAAA	-20	NA	118155746	118151679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523
ENSMUSG00000033909.18_19	chr11	-	1594	1	ISM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	28981	6	2034	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATACCTTTCTGTGTCTG	NA	False	NA	-10	True	AATAAA	-19	NA	118152076	118150482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_118150500_118152100
ENSMUSG00000033909.18_4	chr11	-	4358	21	FSM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	94	1203	43	0	multi-exon	FALSE	canonical	3	124	junction_6	17.6138439870461	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGGCTACCAGTAGCAA	NA	False	NA	-15	True	GATAAA	-20	NA	118180963	118151679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118176826_118178492_118178650_118180782
ENSMUSG00000033916.6_0	chr7	-	882	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	64	3	-4	2	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTACCAAGGCTGTGAG	6999	False	NA	-14	True	AATAAA	-14	NA	12768670	12765943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
ENSMUSG00000033916.6_1	chr7	-	912	6	FSM	ENSMUSG00000033916.6	ENSMUST00000210587.2	930	6	11	7	4	2	multi-exon	FALSE	canonical	3	206	junction_5	1091.38616447159	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTACCAAGGCTGTGAG	7102	False	NA	-14	True	AATAAA	-14	NA	12768567	12765943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768428
ENSMUSG00000033916.6_5	chr7	-	698	5	FSM	ENSMUSG00000033916.6	ENSMUST00000211344.2	606	5	-99	7	-4	-2	multi-exon	FALSE	canonical	3	194	junction_3	1201.14705594278	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAATTTACCAAGGCTG	6999	False	NA	-18	True	AATAAA	-10	NA	12768670	12765947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12767755_12767970_12768561
ENSMUSG00000033917.16_0	chr7	-	1533	6	FSM	ENSMUSG00000033917.16	ENSMUST00000038791.15	1582	6	36	13	6	-13	multi-exon	FALSE	canonical	3	428	junction_5	40.804901666344	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAGGGCAAACTGTGTA	NA	False	NA	-10	True	AATAAA	-15	NA	118304965	118287780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297954_118304612
ENSMUSG00000033917.16_1	chr7	-	1520	6	NIC	ENSMUSG00000033917.16	novel	1582	6	NA	NA	15	-13	combination_of_known_junctions	TRUE	canonical	3	76	junction_5	166.218410532648	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAGGGCAAACTGTGTA	NA	False	NA	-10	True	AATAAA	-15	NA	118304956	118287780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297950_118304612
ENSMUSG00000033918.17_1	chr16	-	1309	10	FSM	ENSMUSG00000033918.17	ENSMUST00000048642.15	1348	10	29	10	3	-10	multi-exon	FALSE	canonical	3	1528	junction_6	107.954723019524	890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGTAAACAGTGTTCGT	NA	False	NA	-26	True	AATAAA	-14	NA	20121108	20098579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
ENSMUSG00000033918.17_2	chr16	-	1372	10	FSM	ENSMUSG00000033918.17	ENSMUST00000136252.8	1362	10	-13	3	3	-3	multi-exon	FALSE	canonical	3	76	junction_6	534.615126360388	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTGTTCGTTCCTTCA	NA	False	NA	-19	True	AATAAA	-21	NA	20121108	20098572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112047_20112153_20116342_20116484_20116880_20117077_20120958
ENSMUSG00000033931.10_0	chr8	-	1549	11	FSM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	24	1851	2	3	multi-exon	FALSE	canonical	3	153	junction_8	10.5470374987482	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTTCAAATGGTCACTG	NA	False	NA	-8	True	AATAAA	-24	NA	127697797	127675772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127696732_127696879_127697487_127697660_127697739
ENSMUSG00000033931.10_1	chr8	-	1646	1	ISM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	22239	15	22217	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAATTTTCTAAAGATGC	NA	False	NA	-15	True	ATTAAA	-14	NA	127675582	127673936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_127673900_127675600
ENSMUSG00000033931.10_3	chr8	-	3227	10	NIC	ENSMUSG00000033931.10	novel	3424	11	NA	NA	14	-15	combination_of_known_splicesites	FALSE	canonical	3	16	junction_8	50.1686046137312	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAATTTTCTAAAGATGC	NA	False	NA	-15	True	ATTAAA	-14	NA	127697785	127673936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127697487_127697660_127697739
ENSMUSG00000033931.10_8	chr8	-	988	8	ISM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	5632	1853	5610	1	3prime_fragment	FALSE	canonical	3	161	junction_7	9.62776596885385	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTGTTCAAATGGTCAC	NA	False	NA	-10	True	AATAAA	-22	NA	127692189	127675774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131
ENSMUSG00000033933.14_1	chr6	+	2733	3	FSM	ENSMUSG00000033933.14	ENSMUST00000035673.8	2792	3	53	6	53	0	multi-exon	FALSE	canonical	3	134	junction_1	12	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAAGCTACTGTGTTGTG	211	False	NA	13	True	AATAAA	-13	NA	113600972	113608588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113601340_113605052_113605176_113606345
ENSMUSG00000033933.14_5	chr6	+	1770	1	ISM	ENSMUSG00000033933.14	ENSMUST00000035673.8	2792	3	5903	2	355	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTACTGTGTTGTGTTAC	2064	False	NA	17	True	AATAAA	-17	NA	113606822	113608592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113606800_113608600
ENSMUSG00000033938.6_0	chr8	+	531	3	FSM	ENSMUSG00000033938.6	ENSMUST00000036996.6	623	3	89	3	2	-3	multi-exon	FALSE	canonical	3	2087	junction_2	87.5	420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTCATCTGTGCTACTT	NA	False	NA	20	True	AATAAA	-20	NA	84293388	84298252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84293560_84297458_84297628_84298061
ENSMUSG00000033940.9_0	chr6	+	852	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	-14	257	-14	-257	multi-exon	FALSE	canonical	3	441	junction_2	10.5	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGTGACTGTGGTGGC	NA	False	NA	22	True	AATAAA	-15	NA	113581718	113593655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113581858_113592736_113592820_113593025
ENSMUSG00000033940.9_5	chr6	+	645	1	ISM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	11528	7	11528	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGACCTGATGTTTATG	NA	False	NA	4	True	AATAAA	-14	NA	113593260	113593905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113593300_113593900
ENSMUSG00000033943.16_50	chr2	+	6527	9	ISM	ENSMUSG00000033943.16	ENSMUST00000046717.13	11982	25	49036	109	4509	-109	3prime_fragment	TRUE	canonical	3	162	junction_5	20.9090291501064	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCTGCTTTTGAAAGTG	NA	False	NA	2	True	ATTAAA	-12	NA	119776744	119798121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119776944_119777305_119778775_119781566_119781695_119783355_119783408_119788637_119788845_119790820_119790933_119791206_119791441_119792274_119792452_119794172
ENSMUSG00000033943.16_51	chr2	+	5387	8	ISM	ENSMUSG00000033943.16	ENSMUST00000046717.13	11982	25	50544	103	6017	-103	3prime_fragment	FALSE	canonical	3	162	junction_4	22.3506380313441	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTTGAAAGTGATTATT	NA	False	NA	8	True	ATTAAA	-18	NA	119778252	119798127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119778775_119781566_119781695_119783355_119783408_119788637_119788845_119790820_119790933_119791206_119791441_119792274_119792452_119794172
ENSMUSG00000033943.16_55	chr2	+	4829	7	ISM	ENSMUSG00000033943.16	ENSMUST00000046717.13	11982	25	53894	103	-7192	-103	3prime_fragment	FALSE	canonical	3	162	junction_3	23.6361305349811	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTTGAAAGTGATTATT	NA	False	NA	8	True	ATTAAA	-18	NA	119781602	119798127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119781695_119783355_119783408_119788637_119788845_119790820_119790933_119791206_119791441_119792274_119792452_119794172
ENSMUSG00000033943.16_57	chr2	+	4601	5	ISM	ENSMUSG00000033943.16	ENSMUST00000046717.13	11982	25	61007	109	-79	-109	3prime_fragment	FALSE	canonical	3	162	junction_1	27.3952550636055	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCTGCTTTTGAAAGTG	NA	False	NA	2	True	ATTAAA	-12	NA	119788715	119798121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119788845_119790820_119790933_119791206_119791441_119792274_119792452_119794172
ENSMUSG00000033943.16_58	chr2	+	4471	4	ISM	ENSMUSG00000033943.16	ENSMUST00000046717.13	11982	25	63113	109	-64	-109	3prime_fragment	FALSE	canonical	3	203	junction_1	14.7196014438797	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCTGCTTTTGAAAGTG	NA	False	NA	2	True	ATTAAA	-12	NA	119790821	119798121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119790933_119791206_119791441_119792274_119792452_119794172
ENSMUSG00000033943.16_60	chr2	+	4358	3	ISM	ENSMUSG00000033943.16	ENSMUST00000046717.13	11982	25	63591	18	414	-18	3prime_fragment	FALSE	canonical	3	213	junction_2	12.5	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACTAATTAAAGCAGAATT	NA	False	NA	-4	True	AATAAA	-7	NA	119791299	119798212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119791441_119792274_119792452_119794172
ENSMUSG00000033943.16_62	chr2	+	2932	1	ISM	ENSMUSG00000033943.16	ENSMUST00000046717.13	11982	25	67488	102	4311	-102	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTTGAAAGTGATTATTT	NA	False	NA	9	True	ATTAAA	-19	NA	119795196	119798128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119795200_119798100
ENSMUSG00000033948.4_0	chr4	+	5692	14	FSM	ENSMUSG00000033948.4	ENSMUST00000044823.4	5582	14	-127	17	-127	-17	multi-exon	FALSE	canonical	3	18	junction_2	3.89203404328416	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTTTTCTAAAAGCAGAA	NA	False	NA	NA	False	AATAAA	-17	NA	116734445	116846444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116735261_116808021_116808379_116815874_116816024_116819706_116819858_116822792_116822973_116830067_116830245_116832392_116832540_116833033_116833172_116836620_116836882_116837081_116837218_116837971_116838130_116841879_116842044_116842878_116842961_116843667
ENSMUSG00000033948.4_3	chr4	+	4430	12	ISM	ENSMUSG00000033948.4	ENSMUST00000044823.4	5582	14	81402	7	81402	-7	3prime_fragment	FALSE	canonical	3	19	junction_9	3.77464354400485	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCAGAAATTGTGTTCT	8235	False	NA	NA	False	AATAAA	-27	NA	116815974	116846454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116816024_116819706_116819858_116822792_116822973_116830067_116830245_116832392_116832540_116833033_116833172_116836620_116836882_116837081_116837218_116837971_116838130_116841879_116842044_116842878_116842961_116843667
ENSMUSG00000033948.4_6	chr4	+	2174	1	ISM	ENSMUSG00000033948.4	ENSMUST00000044823.4	5582	14	109700	15	109700	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTCTAAAAGCAGAAAT	NA	False	NA	NA	False	AATAAA	-19	NA	116844272	116846446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116844300_116846400
ENSMUSG00000033949.13_0	chr18	-	4233	10	FSM	ENSMUSG00000033949.13	ENSMUST00000167364.9	2553	10	0	-1680	0	-312	multi-exon	FALSE	canonical	0	0	junction_3	0.737027731190089	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGTGTGTGGGTTAGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	46331885	46298678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_46300835_46302211_46302510_46305444_46305736_46308614_46308740_46308937_46309192_46311467_46311564_46319188_46319336_46321457_46321784_46329140_46329376_46331580
ENSMUSG00000033952.15_0	chr1	+	9836	28	FSM	ENSMUSG00000033952.15	ENSMUST00000053364.12	9867	28	22	9	22	-6	multi-exon	TRUE	canonical	3	70	junction_14	22.9621266275417	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGTCACTTGTGTGTGT	NA	False	NA	6	True	NA	NA	NA	139382534	139421820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_139382943_139384477_139384622_139384774_139386183_139389163_139389269_139389509_139389657_139390793_139391040_139391973_139392042_139395655_139395798_139396355_139396487_139397073_139397250_139398175_139398322_139398409_139398496_139399308_139399531_139401275_139401484_139401575_139401719_139401982_139402112_139404445_139404641_139405083_139408879_139410075_139410243_139413437_139413526_139414944_139415155_139416125_139416276_139417383_139417576_139417701_139417895_139418036_139418192_139419255_139419433_139420444_139420615_139421385
ENSMUSG00000033952.15_20	chr1	+	3934	11	ISM	ENSMUSG00000033952.15	ENSMUST00000053364.12	9867	28	24368	10	-4383	-7	3prime_fragment	FALSE	canonical	3	111	junction_1	15.2318744742727	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATGTCACTTGTGTGTG	NA	False	NA	5	True	NA	NA	NA	139406880	139421819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_139408879_139410075_139410243_139413437_139413526_139414944_139415155_139416125_139416276_139417383_139417576_139417701_139417895_139418036_139418192_139419255_139419433_139420444_139420615_139421385
ENSMUSG00000033952.15_9	chr1	+	8224	26	ISM	ENSMUSG00000033952.15	ENSMUST00000053364.12	9867	28	3135	196	3091	-193	3prime_fragment	FALSE	canonical	3	70	junction_12	23.4583545885043	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAATTCATTTTTACTAT	NA	False	NA	24	True	AATAAA	-32	NA	139385647	139421633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_139386183_139389163_139389269_139389509_139389657_139390793_139391040_139391973_139392042_139395655_139395798_139396355_139396487_139397073_139397250_139398175_139398322_139398409_139398496_139399308_139399531_139401275_139401484_139401575_139401719_139401982_139402112_139404445_139404641_139405083_139408879_139410075_139410243_139413437_139413526_139414944_139415155_139416125_139416276_139417383_139417576_139417701_139417895_139418036_139418192_139419255_139419433_139420444_139420615_139421385
ENSMUSG00000033953.11_0	chr11	+	2804	6	FSM	ENSMUSG00000033953.11	ENSMUST00000102880.5	2859	6	55	0	55	0	multi-exon	FALSE	canonical	3	579	junction_5	55.0962793662149	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGAATGTATTGTGTCAG	NA	False	NA	11	True	AATAAA	-15	NA	17109317	17150375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_17109543_17132106_17132147_17142956_17143134_17144216_17144277_17144668_17144854_17148258
ENSMUSG00000033953.11_15	chr11	+	1252	1	ISM	ENSMUSG00000033953.11	ENSMUST00000102880.5	2859	6	39861	0	6280	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGAATGTATTGTGTCAG	NA	False	NA	11	True	AATAAA	-15	NA	17149123	17150375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_17149100_17150400
ENSMUSG00000033955.14_0	chr2	+	5718	12	NIC	ENSMUSG00000033955.14	novel	5885	10	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	65.513735863381	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGGTTGTCCAGGATT	NA	False	NA	2	True	AATAAA	-11	NA	84878393	84903382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_84878480_84881208_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84892231_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
ENSMUSG00000033955.14_1	chr2	+	3594	11	NIC	ENSMUSG00000033955.14	novel	5885	10	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_5	74.1261762132649	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGGTTGTCCAGGATT	NA	False	NA	2	True	AATAAA	-11	NA	84878392	84903382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_84878480_84881204_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
ENSMUSG00000033955.14_28	chr2	+	4052	8	FSM	ENSMUSG00000033955.14	ENSMUST00000048400.4	4799	8	737	10	737	0	multi-exon	FALSE	canonical	3	208	junction_1	23.1913073088577	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGGTTGTCCAGGATT	NA	False	NA	2	True	AATAAA	-11	NA	84889239	84903382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_84889832_84892231_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
ENSMUSG00000033955.14_3	chr2	+	5721	12	NIC	ENSMUSG00000033955.14	novel	5885	10	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	133	junction_1	44.7158152361265	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGGTTGTCCAGGATT	NA	False	NA	2	True	AATAAA	-11	NA	84878394	84903382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_84878480_84881204_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84892231_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
ENSMUSG00000033955.14_32	chr2	+	2450	7	ISM	ENSMUSG00000033955.14	ENSMUST00000048400.4	4799	8	4739	10	1934	0	3prime_fragment	FALSE	canonical	3	230	junction_4	19.0613046073277	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGGTTGTCCAGGATT	NA	False	NA	2	True	AATAAA	-11	NA	84893241	84903382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
ENSMUSG00000033960.7_0	chr18	+	6701	4	FSM	ENSMUSG00000033960.7	ENSMUST00000037029.7	6782	4	77	4	77	-4	multi-exon	TRUE	canonical	3	21	junction_2	13.6950923894494	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACCTCTTTGGTATTGTG	11	True	NA	10	True	AATAAA	-15	NA	4634954	4682865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_4635032_4649074_4649406_4672514_4676168_4680225
ENSMUSG00000033960.7_1	chr18	+	6611	3	FSM	ENSMUSG00000033960.7	ENSMUST00000234153.2	4575	3	20	-2056	20	-4	multi-exon	FALSE	canonical	3	21	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACCTCTTTGGTATTGTG	NA	False	NA	10	True	AATAAA	-15	NA	4649087	4682865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_4649406_4672514_4676168_4680225
ENSMUSG00000033960.7_2	chr18	+	3609	2	ISM	ENSMUSG00000033960.7	ENSMUST00000234153.2	4575	3	26131	-2056	26131	-4	3prime_fragment	FALSE	canonical	3	23	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACCTCTTTGGTATTGTG	NA	False	NA	10	True	AATAAA	-15	NA	4675198	4682865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_4676168_4680225
ENSMUSG00000033960.7_3	chr18	+	1497	1	ISM	ENSMUSG00000033960.7	ENSMUST00000037029.7	6782	4	46491	4	32301	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACCTCTTTGGTATTGTG	NA	False	NA	10	True	AATAAA	-15	NA	4681368	4682865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_4681400_4682900
ENSMUSG00000033961.17_0	chr7	+	3259	6	FSM	ENSMUSG00000033961.17	ENSMUST00000045810.15	4615	6	19	1337	19	37	multi-exon	FALSE	canonical	2	6	junction_1	10.7962956610126	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAACCTGAGTTTTCAAC	NA	False	NA	NA	False	NA	NA	NA	12711793	12718304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12712040_12712924_12713306_12713377_12713574_12713811_12713907_12715772_12715855_12716045
ENSMUSG00000033961.17_1	chr7	+	3349	6	NIC	ENSMUSG00000033961.17	novel	4615	6	NA	NA	19	21	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	4.88262224629348	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCAAAGTGTCGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	12711793	12718288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_12712146_12712924_12713306_12713377_12713574_12713811_12713907_12715772_12715855_12716045
ENSMUSG00000033961.17_10	chr7	+	3426	5	NIC	ENSMUSG00000033961.17	novel	4615	6	NA	NA	-14	38	intron_retention	FALSE	canonical	3	25	junction_1	4.81534007106456	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACCTGAGTTTTCAACA	NA	False	NA	NA	False	NA	NA	NA	12711805	12718305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_12712146_12712924_12713574_12713811_12713907_12715772_12715855_12716045
ENSMUSG00000033961.17_14	chr7	+	3235	4	ISM	ENSMUSG00000033961.17	ENSMUST00000108536.3	3705	5	730	-69	-552	38	intron_retention	FALSE	canonical	3	25	junction_1	4.96655480858378	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACCTGAGTTTTCAACA	NA	False	NA	NA	False	NA	NA	NA	12712894	12718305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_12713306_12713377_12713574_12713811_12713907_12715772
ENSMUSG00000033961.17_17	chr7	+	3207	3	NIC	ENSMUSG00000033961.17	novel	3705	5	NA	NA	-469	21	intron_retention	FALSE	canonical	3	35	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCAAAGTGTCGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	12712977	12718288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_12713574_12713811_12713907_12715772
ENSMUSG00000033961.17_2	chr7	+	3468	5	ISM	ENSMUSG00000033961.17	ENSMUST00000045810.15	4615	6	10	1328	10	46	intron_retention	FALSE	canonical	2	6	junction_1	12.051970793194	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTTTCAACACTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	12711784	12718313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_12712040_12712924_12713306_12713377_12713574_12713811_12713907_12715772
ENSMUSG00000033961.17_25	chr7	+	2825	2	ISM	ENSMUSG00000033961.17	ENSMUST00000108536.3	3705	5	1435	-54	153	23	intron_retention	FALSE	canonical	3	36	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGTGTCGTCTAGAAA	NA	False	NA	NA	False	NA	NA	NA	12713599	12718290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_12713907_12715772
ENSMUSG00000033961.17_3	chr7	+	3566	5	FSM	ENSMUSG00000033961.17	ENSMUST00000108535.8	2594	5	10	-982	10	38	multi-exon	FALSE	canonical	3	25	junction_1	5.2618912949623	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACCTGAGTTTTCAACA	NA	False	NA	NA	False	NA	NA	NA	12711784	12718305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12712146_12712924_12713306_12713377_12713574_12713811_12713907_12715772
ENSMUSG00000033961.17_8	chr7	+	4460	3	NIC	ENSMUSG00000033961.17	novel	3705	5	NA	NA	2	26	intron_retention	FALSE	canonical	3	27	junction_2	4.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGTCGTCTAGAAACCT	NA	False	NA	NA	False	NA	NA	NA	12711776	12718293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_12713907_12715772_12715855_12716045
ENSMUSG00000033961.17_9	chr7	+	2086	1	ISM	ENSMUSG00000033961.17	ENSMUST00000045810.15	4615	6	4445	1336	2773	38	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACCTGAGTTTTCAACA	NA	False	NA	NA	False	NA	NA	NA	12716219	12718305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_12716200_12718300
ENSMUSG00000033964.13_1	chr1	+	4739	11	NIC	ENSMUSG00000033964.13	novel	3803	11	NA	NA	-54	149	intron_retention	TRUE	canonical	3	36	junction_4	7.92464510246358	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTATCAAAGTTTGGTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	139349971	139377070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_139350065_139350771_139352006_139356863_139357072_139358018_139358089_139359666_139359815_139365178_139365309_139366695_139366792_139368082_139368190_139369500_139369607_139370546_139370636_139374612
ENSMUSG00000033964.13_10	chr1	+	4232	1	ISM	ENSMUSG00000033964.13	ENSMUST00000039867.10	8361	11	26381	11	25109	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCTAGTAAAGCACACCCA	NA	False	NA	NA	False	AATAAA	-11	NA	139376500	139380732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_139376500_139380700
ENSMUSG00000033964.13_2	chr1	+	3723	11	FSM	ENSMUSG00000033964.13	ENSMUST00000039867.10	8361	11	-28	4666	-28	-844	multi-exon	FALSE	canonical	3	10	junction_1	14.624978632463	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTATCTAATTGAGTATA	NA	False	NA	NA	False	AATAAA	-23	NA	139350091	139376077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_139350162_139350771_139352006_139356863_139357072_139358018_139358089_139359666_139359815_139365178_139365309_139366695_139366792_139368082_139368190_139369500_139369607_139370546_139370636_139374612
ENSMUSG00000033964.13_7	chr1	+	3638	11	NNC	ENSMUSG00000033964.13	novel	8361	11	NA	NA	-17	-1090	intron_retention	FALSE	canonical	2	5	junction_1	15.9762323468332	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTGAGTTTAGAAACTT	NA	False	NA	NA	False	ATTAAA	-19	NA	139350102	139375831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_139350334_139350771_139352006_139356863_139357072_139358018_139358089_139359666_139359815_139365178_139365309_139366695_139366792_139368082_139368190_139369500_139369607_139370546_139370636_139374612
ENSMUSG00000033966.9_0	chr17	-	2871	7	NNC	ENSMUSG00000033966.9	novel	2931	10	NA	NA	13477	-13	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	2.23606797749979	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTCTCCTAACTTTTAT	NA	False	NA	NA	False	AATAAA	-13	NA	80857786	80830991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_80832816_80841226_80841362_80842822_80842880_80846932_80847016_80851048_80851247_80855120_80855212_80857303
ENSMUSG00000033966.9_3	chr17	-	2775	9	ISM	ENSMUSG00000033966.9	ENSMUST00000086545.5	2931	10	3294	12	3294	-12	3prime_fragment	FALSE	canonical	1	1	junction_8	2.26039266500314	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCCTAACTTTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	80867969	80830990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_80832816_80841226_80841362_80842822_80842880_80846932_80847016_80851048_80851247_80855120_80855212_80858254_80858328_80863735_80863858_80867778
ENSMUSG00000033967.5_1	chr7	+	2819	1	FSM	ENSMUSG00000065006.3	ENSMUST00000083072.3	107	1	-2523	-189	-2523	189	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTTATGTGTATGTAT	NA	False	NA	NA	False	ATTAAA	-11	NA	12662177	12664996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12662200_12665000
ENSMUSG00000033967.5_2	chr7	+	3308	2	FSM	ENSMUSG00000033967.5	ENSMUST00000045870.5	3239	2	-71	2	-71	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTATGTGTATGTATA	NA	False	NA	NA	False	ATTAAA	-12	NA	12661271	12664997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12661394_12661811
ENSMUSG00000033970.16_0	chr5	-	1205	9	FSM	ENSMUSG00000033970.16	ENSMUST00000038131.10	1317	9	43	69	3	-1	multi-exon	FALSE	canonical	3	280	junction_1	24.5098832106561	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGTATCATTTGTGTTT	NA	False	NA	-9	True	AATAAA	-14	NA	151574664	151566289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_151566569_151567175_151567246_151568077_151568177_151568254_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
ENSMUSG00000033970.16_10	chr5	-	1264	1	NIC	ENSMUSG00000033970.16	novel	1317	9	NA	NA	40	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTAATGTATCATTTGTG	NA	False	NA	-12	True	AATAAA	-11	NA	151567556	151566292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_151566300_151567600
ENSMUSG00000033972.10_0	chr17	-	1569	1	ISM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	21839	4	21839	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTTGGACTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	22558542	22556973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_22557000_22558500
ENSMUSG00000033972.10_1	chr17	-	2691	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	15	-5	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	20.2484567313166	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGGACTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22580366	22556974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577897_22578420_22578506_22580148
ENSMUSG00000033972.10_10	chr17	-	3926	2	ISM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	18622	5	18622	-5	3prime_fragment	FALSE	canonical	3	99	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGGACTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22561759	22556974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_22559089_22559947
ENSMUSG00000033972.10_17	chr17	-	5236	5	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	16	-5	intron_retention	FALSE	canonical	3	53	junction_2	18.6329680942141	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGGACTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22580365	22556974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_22559089_22559947_22562675_22577803_22577897_22578420_22578506_22580148
ENSMUSG00000033972.10_2	chr17	-	2759	6	FSM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	20	5	20	-5	multi-exon	FALSE	canonical	3	51	junction_4	24.8997991959775	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGGACTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22580361	22556974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577970_22578420_22578506_22580148
ENSMUSG00000033972.10_28	chr17	-	2118	4	ISM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	20	4051	20	-4051	5prime_fragment	FALSE	canonical	3	51	junction_2	21.2289111041209	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTTTGGAATGTTGACT	NA	False	NA	NA	False	CATAAA	-29	NA	22580361	22561020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_22562675_22577803_22577970_22578420_22578506_22580148
ENSMUSG00000033972.10_3	chr17	-	2747	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	16	-2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.1946965701747	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGACTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	22580365	22556971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577897_22578420_22578506_22580148
ENSMUSG00000033972.10_5	chr17	-	5317	5	NIC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	8	-5	intron_retention	FALSE	canonical	3	51	junction_3	23.0217288664427	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGGACTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22580373	22556974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_22559089_22559947_22562675_22577803_22577970_22578420_22578506_22580148
ENSMUSG00000033983.15_16	chr11	+	575	3	ISM	ENSMUSG00000033983.15	ENSMUST00000107898.8	3120	11	2	18499	2	-17840	5prime_fragment	FALSE	canonical	3	638	junction_1	568	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATACTGCTCTCGCGTC	9433	False	NA	10	True	AATAAA	-42	NA	88861079	88863940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_88861099_88861243_88861306_88863446
ENSMUSG00000033983.15_35	chr11	+	4134	8	NIC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	7	-8	intron_retention	FALSE	canonical	3	336	junction_3	495.280419436859	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCAATGTCCACTCTGA	9438	False	NA	7	True	AATAAA	-9	NA	88861084	88882431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_88861306_88863446_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ENSMUSG00000033983.15_39	chr11	+	858	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	3	-17548	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	887	96	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATCTTCCTATTTA	9434	False	NA	NA	False	NA	NA	NA	88861080	88864232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_88861091_88861243_88861306_88863446
ENSMUSG00000033983.15_75	chr11	+	2589	7	FSM	ENSMUSG00000033983.15	ENSMUST00000036649.8	2607	7	10	8	10	-8	multi-exon	FALSE	canonical	3	336	junction_2	22.1616535684702	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCAATGTCCACTCTGA	NA	False	NA	7	True	AATAAA	-9	NA	88864770	88882431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ENSMUSG00000033983.15_9	chr11	+	995	2	NIC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	4	-17563	intron_retention	FALSE	canonical	3	1774	junction_1	0	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAATAAATCTTTTAAAGA	9435	False	NA	NA	False	NA	NA	NA	88861081	88864217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_88861306_88863446
ENSMUSG00000033983.15_92	chr11	+	1985	6	ISM	ENSMUSG00000033983.15	ENSMUST00000036649.8	2607	7	7484	4	-6160	-4	3prime_fragment	FALSE	canonical	3	336	junction_1	23.4486673395313	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATGTCCACTCTGAGTTA	7455	False	NA	11	True	AATAAA	-13	NA	88872244	88882435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ENSMUSG00000033985.18_0	chr4	+	2877	11	FSM	ENSMUSG00000033985.18	ENSMUST00000045542.13	3033	11	15	141	-6	-1	multi-exon	FALSE	canonical	3	31	junction_7	8.01810451416044	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGTTAGCCTTATTTGTA	NA	False	NA	NA	False	AATAAA	-16	NA	116578159	116661298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116578454_116598812_116599116_116608301_116608424_116628996_116629046_116649284_116649432_116657729_116657813_116658356_116658442_116658645_116658730_116658916_116659004_116659420_116659539_116659793
ENSMUSG00000033985.18_8	chr4	+	973	1	ISM	ENSMUSG00000033985.18	ENSMUST00000045542.13	3033	11	82168	154	31353	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTGCAGGTGCTAGTT	8791	False	NA	NA	False	AATAAA	-3	NA	116660312	116661285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116660300_116661300
ENSMUSG00000033987.17_7	chr11	-	2243	11	ISM	ENSMUSG00000033987.17	ENSMUST00000132685.9	13612	81	92277	1	50837	-1	3prime_fragment	FALSE	canonical	1	1	junction_10	4.2614551505325	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCCGTCTGATGCACTCA	NA	False	NA	NA	False	ATTAAA	-16	NA	117929183	117913902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_117914324_117915419_117915646_117915928_117916073_117916343_117916527_117917498_117917682_117918149_117918330_117923418_117923611_117924561_117924790_117925074_117925203_117927157_117927307_117928974
ENSMUSG00000033991.10_1	chr13	+	6525	45	FSM	ENSMUSG00000033991.10	ENSMUST00000224386.2	6976	45	58	393	58	-183	multi-exon	FALSE	canonical	3	133	junction_18	35.3654766990177	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGACTAATACTCAGTATT	NA	False	NA	1	True	ATTAAA	-13	NA	76246910	76338042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_76246949_76247489_76247560_76252823_76252888_76254348_76254498_76256311_76256403_76259791_76259936_76260293_76260386_76261156_76261233_76261688_76261830_76266202_76266302_76266396_76266506_76270753_76270895_76271560_76271663_76272879_76273020_76275084_76275172_76275615_76275720_76276742_76276870_76277478_76277659_76278319_76278445_76279326_76279581_76280976_76281080_76282793_76282971_76283065_76283211_76283345_76283425_76283519_76283582_76284536_76284594_76286452_76286522_76287606_76287682_76288646_76288789_76291301_76291396_76293319_76293398_76295830_76295956_76296861_76296986_76298636_76298856_76300028_76300102_76303540_76303595_76303770_76303883_76305367_76305497_76321437_76321560_76323307_76323467_76328162_76328316_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ENSMUSG00000033991.10_32	chr13	+	5283	44	ISM	ENSMUSG00000033991.10	ENSMUST00000224386.2	6976	45	635	1599	635	693	3prime_fragment	FALSE	canonical	3	133	junction_17	35.5771087249153	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTATTAGTATGAAACAT	NA	False	NA	24	True	AATAAA	-25	NA	76247487	76336836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_76247560_76252823_76252888_76254348_76254498_76256311_76256403_76259791_76259936_76260293_76260386_76261156_76261233_76261688_76261830_76266202_76266302_76266396_76266506_76270753_76270895_76271560_76271663_76272879_76273020_76275084_76275172_76275615_76275720_76276742_76276870_76277478_76277659_76278319_76278445_76279326_76279581_76280976_76281080_76282793_76282971_76283065_76283211_76283345_76283425_76283519_76283582_76284536_76284594_76286452_76286522_76287606_76287682_76288646_76288789_76291301_76291396_76293319_76293398_76295830_76295956_76296861_76296986_76298636_76298856_76300028_76300102_76303540_76303595_76303770_76303883_76305367_76305497_76321437_76321560_76323307_76323467_76328162_76328316_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ENSMUSG00000033991.10_69	chr13	+	4230	4	ISM	ENSMUSG00000033991.10	ENSMUST00000224386.2	6976	45	81695	390	4	-180	3prime_fragment	FALSE	canonical	3	252	junction_3	18.3847763108502	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTAATACTCAGTATTTCA	NA	False	NA	4	True	ATTAAA	-16	NA	76328547	76338045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_76331065_76333245_76333370_76335718_76335814_76336551
ENSMUSG00000033991.10_70	chr13	+	1967	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	2	-183	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGACTAATACTCAGTATT	NA	False	NA	1	True	ATTAAA	-13	NA	76328545	76338042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ENSMUSG00000033991.10_71	chr13	+	1931	5	FSM	ENSMUSG00000033991.10	ENSMUST00000223902.2	2116	5	2	183	2	-183	multi-exon	FALSE	canonical	0	0	junction_1	121.425903332032	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGACTAATACTCAGTATT	NA	False	NA	1	True	ATTAAA	-13	NA	76328545	76338042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_76328636_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ENSMUSG00000033998.10_1	chr8	+	2110	3	FSM	ENSMUSG00000033998.10	ENSMUST00000046765.10	2235	3	123	2	123	0	multi-exon	FALSE	canonical	3	118	junction_2	9	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGTGGTTTATTACAA	NA	False	NA	19	True	AATAAA	-16	NA	126722031	126757422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_126722554_126751750_126752147_126756230
ENSMUSG00000033998.10_2	chr8	+	1543	4	FSM	ENSMUSG00000033998.10	ENSMUST00000212831.2	1309	4	-234	0	32	0	multi-exon	FALSE	canonical	3	7	junction_3	57.0438427878066	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGTGGTTTATTACAA	NA	False	NA	19	True	AATAAA	-16	NA	126721940	126757422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_126722554_126751750_126752147_126756230_126756432_126757089
ENSMUSG00000034006.18_0	chr18	+	1961	5	FSM	ENSMUSG00000034006.18	ENSMUST00000123750.8	2004	5	30	13	30	0	multi-exon	FALSE	canonical	1	1	junction_1	16.6132477258361	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATGCTTCATGTGGTG	NA	False	NA	2	True	AATAAA	-35	NA	80298489	80335927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80298626_80299996_80300334_80306634_80306769_80326490_80326708_80334790
ENSMUSG00000034006.18_12	chr18	+	2097	5	FSM	ENSMUSG00000034006.18	ENSMUST00000140594.8	2356	5	259	0	248	0	multi-exon	FALSE	canonical	3	12	junction_2	14.7732867026942	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGCTTCATGTGGTGTA	NA	False	NA	4	True	AATAAA	-37	NA	80299780	80335929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80300334_80306634_80306769_80315676_80315731_80326490_80326708_80334790
ENSMUSG00000034006.18_2	chr18	+	1541	4	FSM	ENSMUSG00000034006.18	ENSMUST00000134545.3	3258	4	-28	1745	-5	-1745	multi-exon	FALSE	canonical	3	12	junction_3	14.3527000944073	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACTGGGTAATGAGGTAA	NA	False	NA	NA	False	AATATA	-17	NA	80299493	80316621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80315676
ENSMUSG00000034006.18_3	chr18	+	1876	5	FSM	ENSMUSG00000034006.18	ENSMUST00000129043.8	1864	5	-14	2	-14	0	multi-exon	FALSE	canonical	3	16	junction_1	11.0989864402116	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGCTTCATGTGGTGTA	NA	False	NA	4	True	AATAAA	-37	NA	80299484	80335929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80299534_80299996_80300334_80306634_80306769_80326490_80326708_80334790
ENSMUSG00000034006.18_4	chr18	+	2004	6	FSM	ENSMUSG00000034006.18	ENSMUST00000091798.10	1989	6	-27	12	-5	0	multi-exon	FALSE	canonical	3	12	junction_3	14.1279864099595	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATGCTTCATGTGGTG	NA	False	NA	2	True	AATAAA	-35	NA	80299493	80335927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80315676_80315731_80326490_80326708_80334790
ENSMUSG00000034006.18_5	chr18	+	1925	6	NIC	ENSMUSG00000034006.18	novel	1989	6	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	13.8650640099496	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGCTTCATGTGGTGTA	NA	False	NA	4	True	AATAAA	-37	NA	80299489	80335929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_80299534_80299996_80300334_80306634_80306769_80315676_80315731_80326490_80326708_80334790
ENSMUSG00000034006.18_6	chr18	+	1950	5	FSM	ENSMUSG00000034006.18	ENSMUST00000070135.8	1911	5	-38	-1	-4	1	multi-exon	FALSE	canonical	3	25	junction_3	7.26291952316697	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATGCTTCATGTGGTGT	NA	False	NA	3	True	AATAAA	-36	NA	80299494	80335928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80326490_80326708_80334790
ENSMUSG00000034006.18_7	chr18	+	1648	4	NIC	ENSMUSG00000034006.18	novel	1864	5	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	18.624953392932	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATGCTTCATGTGGTG	NA	False	NA	2	True	AATAAA	-35	NA	80299493	80335927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_80299534_80299996_80300334_80306634_80306769_80334790
ENSMUSG00000034006.18_8	chr18	+	1822	4	ISM	ENSMUSG00000034006.18	ENSMUST00000070135.8	1911	5	463	4	463	-4	3prime_fragment	FALSE	canonical	3	25	junction_2	8.2192186706253	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACATGCTTCATGT	NA	False	NA	-2	True	AATAAA	-31	NA	80299995	80335923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_80300334_80306634_80306769_80326490_80326708_80334790
ENSMUSG00000034007.11_1	chr9	-	4857	33	FSM	ENSMUSG00000034007.11	ENSMUST00000214747.2	5231	33	-3	377	-3	-373	multi-exon	FALSE	canonical	3	40	junction_24	10.0574521500229	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGAGGGAGTATCAAGT	NA	False	NA	-12	True	AATAAA	-8	NA	55845388	55457539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_55458156_55460754_55460807_55463368_55463561_55487490_55487641_55493502_55493738_55510049_55510206_55517125_55517359_55563188_55563313_55593163_55593280_55650826_55650954_55665276_55665343_55669511_55669649_55714296_55714405_55714889_55715043_55716385_55716468_55722644_55722788_55723937_55724094_55745403_55745545_55765364_55765477_55765691_55765810_55766282_55766359_55767031_55767203_55771687_55771889_55781928_55782189_55791130_55791289_55799455_55799573_55802565_55802667_55819323_55819519_55822183_55822255_55823270_55823389_55826807_55826872_55828549_55828623_55845353
ENSMUSG00000034007.11_2	chr9	-	4823	32	ISM	ENSMUSG00000034007.11	ENSMUST00000214747.2	5231	33	16762	377	-1734	-373	3prime_fragment	FALSE	canonical	3	40	junction_24	10.0946612238215	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGAGGGAGTATCAAGT	NA	False	NA	-12	True	AATAAA	-8	NA	55828623	55457539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_55458156_55460754_55460807_55463368_55463561_55487490_55487641_55493502_55493738_55510049_55510206_55517125_55517359_55563188_55563313_55593163_55593280_55650826_55650954_55665276_55665343_55669511_55669649_55714296_55714405_55714889_55715043_55716385_55716468_55722644_55722788_55723937_55724094_55745403_55745545_55765364_55765477_55765691_55765810_55766282_55766359_55767031_55767203_55771687_55771889_55781928_55782189_55791130_55791289_55799455_55799573_55802565_55802667_55819323_55819519_55822183_55822255_55823270_55823389_55826807_55826872_55828549
ENSMUSG00000034007.11_6	chr9	-	4884	33	NNC	ENSMUSG00000034007.11	novel	5231	33	NA	NA	-30	-373	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_32	14.4078090262711	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGAGGGAGTATCAAGT	NA	False	NA	-12	True	AATAAA	-8	NA	55845433	55457539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_55458156_55460754_55460807_55463368_55463561_55487490_55487641_55493502_55493738_55510049_55510206_55517125_55517359_55563188_55563313_55593163_55593280_55650826_55650954_55665276_55665343_55669511_55669649_55714296_55714405_55714889_55715043_55716385_55716468_55722644_55722788_55723937_55724094_55745403_55745545_55765364_55765477_55765691_55765810_55766282_55766359_55767031_55767203_55771687_55771889_55781928_55782189_55791130_55791289_55799455_55799573_55802565_55802667_55819323_55819519_55822183_55822255_55823270_55823389_55826807_55826872_55828549_55828623_55845371
ENSMUSG00000034021.16_0	chr5	+	6794	35	FSM	ENSMUSG00000034021.16	ENSMUST00000016569.11	7417	35	136	487	48	-277	multi-exon	FALSE	canonical	2	103	junction_31	23.7978256399679	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTATACGACATTAATTGC	NA	False	NA	1	True	AATAAA	-8	NA	150597339	150733668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720136_150724042_150724483_150724586_150724695_150729038_150729178_150731277
ENSMUSG00000034021.16_10	chr5	+	6166	35	FSM	ENSMUSG00000034021.16	ENSMUST00000038900.15	7315	35	49	1100	49	-298	multi-exon	FALSE	canonical	2	6	junction_32	36.1914961622709	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATGTTTGAATTGTGT	NA	False	NA	NA	False	NA	NA	NA	150597340	150733032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720142_150724042_150724483_150724583_150724695_150729038_150729178_150731277
ENSMUSG00000034021.16_5	chr5	+	6410	35	FSM	ENSMUSG00000034021.16	ENSMUST00000202170.4	6598	35	134	54	46	-54	multi-exon	FALSE	canonical	2	95	junction_31	24.4340259944524	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAACTAAACTTCATTGGA	NA	False	NA	NA	False	AATAAA	-22	NA	150597337	150733276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720142_150724042_150724483_150724586_150724695_150729038_150729178_150731277
ENSMUSG00000034021.16_6	chr5	+	6397	34	NIC	ENSMUSG00000034021.16	novel	6598	35	NA	NA	52	2	combination_of_known_splicesites	FALSE	canonical	2	37	junction_28	31.2727566361149	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAAAAAATATTATG	NA	False	NA	NA	False	AATATA	-19	NA	150597343	150733332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717732_150717879_150720035_150720142_150724042_150724483_150724586_150724695_150729038_150729178_150731277
ENSMUSG00000034021.16_7	chr5	+	6737	34	NIC	ENSMUSG00000034021.16	novel	7417	35	NA	NA	46	-273	combination_of_known_splicesites	FALSE	canonical	2	37	junction_28	30.7733501869126	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACGACATTAATTGCTACA	NA	False	NA	5	True	AATAAA	-12	NA	150597337	150733672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717732_150717879_150720035_150720136_150724042_150724483_150724586_150724695_150729038_150729178_150731277
ENSMUSG00000034021.16_73	chr5	+	3182	4	ISM	ENSMUSG00000034021.16	ENSMUST00000016569.11	7417	35	126993	229	-4497	-19	3prime_fragment	FALSE	canonical	3	166	junction_1	12.2565175405668	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTTCTTACAGCTTGCA	NA	False	NA	3	True	ATTAAA	-17	NA	150724196	150733926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150724483_150724586_150724695_150729038_150729178_150731277
ENSMUSG00000034021.16_75	chr5	+	1961	1	ISM	ENSMUSG00000034021.16	ENSMUST00000016569.11	7417	35	134770	221	3280	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGCTTGCAAGTTTGAC	NA	False	NA	11	True	ATTAAA	-25	NA	150731973	150733934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150732000_150733900
ENSMUSG00000034022.9_1	chr15	-	4442	37	FSM	ENSMUSG00000034022.9	ENSMUST00000071898.7	4518	37	73	3	-7	0	multi-exon	FALSE	canonical	3	484	junction_25	49.8187687746518	874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGAGTGTGTGGTCATTG	NA	False	NA	-5	True	TATAAA	-24	NA	76491718	76480008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
ENSMUSG00000034022.9_23	chr15	-	4414	37	FSM	ENSMUSG00000034022.9	ENSMUST00000230157.2	4410	37	-4	0	-4	0	multi-exon	TRUE	canonical	3	40	junction_1	98.8724822532214	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGAGTGTGTGGTCATTG	NA	False	NA	-5	True	TATAAA	-24	NA	76491715	76480008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76480108_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
ENSMUSG00000034023.17_1	chr6	+	5486	44	FSM	ENSMUSG00000034023.17	ENSMUST00000036340.12	5512	44	24	2	2	-2	multi-exon	FALSE	canonical	3	237	junction_19	37.6323336574577	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTGTTGTTGTTGGTTTT	NA	False	NA	9	True	ATTAAA	-14	NA	113508666	113573976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545564_113545678_113547833_113547978_113549604_113549722_113551047_113551177_113551534_113551654_113554325_113554437_113555321_113555453_113558344_113558439_113560372_113560496_113561809_113561904_113562432_113562505_113563170_113563210_113564342_113564418_113565305_113565381_113568119_113568267_113570190_113570293_113572848
ENSMUSG00000034023.17_6	chr6	+	5450	43	FSM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	0	-743	0	-1	multi-exon	TRUE	canonical	3	81	junction_38	50.0643576738687	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTTGTTGTTGGTTTTT	NA	False	NA	10	True	ATTAAA	-15	NA	113508664	113573977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545564_113545678_113547833_113547978_113549604_113549722_113551047_113551177_113551534_113551654_113554325_113554437_113555321_113555453_113558344_113558439_113560372_113560496_113561809_113561904_113562432_113562505_113564342_113564418_113565305_113565381_113568119_113568267_113570190_113570293_113572848
ENSMUSG00000034024.9_0	chr10	-	1920	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	34	5	-17	0	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	2561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTTAATGTCTTACTGA	NA	False	NA	-16	True	AATAAA	-14	NA	116899685	116886910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
ENSMUSG00000034024.9_1	chr10	-	2029	16	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	3	239	junction_15	561.749291647677	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTTAATGTCTTACTGA	NA	False	NA	-16	True	AATAAA	-14	NA	116899248	116886910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899064
ENSMUSG00000034032.16_0	chr2	-	4768	26	NIC	ENSMUSG00000034032.16	novel	4813	26	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	3	84	junction_25	88.1886704741601	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCTGGACTGTTTTGT	493	False	NA	-6	True	AATAAA	-16	NA	119617989	119594444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617915
ENSMUSG00000034032.16_14	chr2	-	4711	25	FSM	ENSMUSG00000034032.16	ENSMUST00000048493.12	4744	25	29	4	-4	-1	multi-exon	FALSE	canonical	3	120	junction_24	70.0848691865005	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCTGGACTGTTTTGT	493	False	NA	-6	True	AATAAA	-16	NA	119617989	119594444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
ENSMUSG00000034032.16_15	chr2	-	4691	25	NIC	ENSMUSG00000034032.16	novel	5458	26	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	3	58	junction_24	80.8678191041818	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCTGGACTGTTTTGT	493	False	NA	-6	True	AATAAA	-16	NA	119617989	119594444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617915
ENSMUSG00000034032.16_7	chr2	-	4788	26	FSM	ENSMUSG00000034032.16	ENSMUST00000099529.9	4813	26	20	5	-4	-1	multi-exon	FALSE	canonical	3	111	junction_25	84.4691091464803	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCTGGACTGTTTTGT	493	False	NA	-6	True	AATAAA	-16	NA	119617989	119594444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617895
ENSMUSG00000034037.15_0	chr6	+	6059	21	FSM	ENSMUSG00000034037.15	ENSMUST00000089334.9	6095	21	32	4	32	-4	multi-exon	FALSE	canonical	0	0	junction_5	1.67032930884901	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATTTTTACTTGTAGTA	NA	False	NA	NA	False	AATAAA	-16	NA	91955890	92052981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_91956024_91963781_91966447_92001484_92001615_92015005_92015065_92015167_92015199_92026986_92027148_92027370_92027531_92028060_92028149_92030207_92030259_92030791_92030851_92038784_92038857_92039816_92039886_92042128_92042213_92043163_92043244_92044482_92044583_92044865_92045004_92045428_92045559_92046348_92046483_92048292_92048422_92051078_92051234_92051550
ENSMUSG00000034037.15_6	chr6	+	3213	19	ISM	ENSMUSG00000034037.15	ENSMUST00000113466.2	5621	20	37442	4	37442	-4	3prime_fragment	FALSE	canonical	0	0	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATTTTTACTTGTAGTA	NA	False	NA	NA	False	AATAAA	-16	NA	92001532	92052981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_92001615_92015005_92015065_92015167_92015199_92026986_92027148_92027370_92027531_92028060_92028149_92030207_92030259_92030791_92030851_92038784_92038857_92039816_92039886_92042128_92042213_92043163_92043244_92044482_92044583_92044865_92045004_92045428_92045559_92046348_92046483_92048292_92048422_92051078_92051234_92051550
ENSMUSG00000034042.17_32	chr4	+	2444	11	ISM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	12335	144	-8806	-144	3prime_fragment	FALSE	canonical	3	268	junction_1	30.0913608864737	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGAGAGTGGATTCT	NA	False	NA	5	True	AATATA	-9	NA	116427189	116450935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
ENSMUSG00000034042.17_7	chr4	+	3359	12	FSM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	55	174	55	-174	multi-exon	FALSE	canonical	3	268	junction_2	28.7128847743677	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGTCTTGTGTAAGAAATA	NA	False	NA	15	True	AATAAA	-19	NA	116414909	116450905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
ENSMUSG00000034055.17_0	chrX	-	4721	33	FSM	ENSMUSG00000034055.17	ENSMUST00000052012.14	6115	33	7	1387	7	-1387	multi-exon	TRUE	canonical	3	40	junction_24	10.1886502418132	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAGTTTAAGAATTTCTG	NA	False	NA	-12	True	ATTAAA	-16	NA	101687845	101558967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_101559822_101560382_101560584_101561048_101561103_101564359_101564531_101571672_101571724_101575682_101575722_101576008_101576125_101580789_101580892_101584717_101584848_101584977_101585057_101588279_101588360_101588913_101589071_101598489_101598630_101599131_101599224_101600701_101600879_101603170_101603341_101612895_101612975_101617073_101617219_101618570_101618681_101629682_101629818_101636232_101636312_101641007_101641116_101641791_101641888_101652647_101652771_101653757_101653812_101659516_101659664_101660922_101661022_101664943_101665025_101669193_101669277_101680148_101680318_101682686_101682735_101685826_101685986_101687452
ENSMUSG00000034055.17_13	chrX	-	3806	16	ISM	ENSMUSG00000034055.17	ENSMUST00000052012.14	6115	33	84592	114	84592	-114	3prime_fragment	TRUE	canonical	3	43	junction_7	11.3634892919776	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATTACTGGCGTTTTG	NA	False	NA	NA	False	TTTAAA	-13	NA	101603260	101557694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_101559822_101560382_101560584_101561048_101561103_101564359_101564531_101571672_101571724_101575682_101575722_101576008_101576125_101580789_101580892_101584717_101584848_101584977_101585057_101588279_101588360_101588913_101589071_101598489_101598630_101599131_101599224_101600701_101600879_101603170
ENSMUSG00000034055.17_18	chrX	-	4676	32	NIC	ENSMUSG00000034055.17	novel	6115	33	NA	NA	10	-1390	combination_of_known_splicesites	FALSE	canonical	1	6	junction_5	13.5917891600127	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGGAAGTTTAAGAATTT	NA	False	NA	-15	True	ATTAAA	-13	NA	101687842	101558970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_101559822_101560382_101560584_101561048_101561103_101564359_101564531_101571672_101571724_101576008_101576125_101580789_101580892_101584717_101584848_101584977_101585057_101588279_101588360_101588913_101589071_101598489_101598630_101599131_101599224_101600701_101600879_101603170_101603341_101612895_101612975_101617073_101617219_101618570_101618681_101629682_101629818_101636232_101636312_101641007_101641116_101641791_101641888_101652647_101652771_101653757_101653812_101659516_101659664_101660922_101661022_101664943_101665025_101669193_101669277_101680148_101680318_101682686_101682735_101685826_101685986_101687452
ENSMUSG00000034055.17_26	chrX	-	4529	28	ISM	ENSMUSG00000034055.17	ENSMUST00000052012.14	6115	33	27	16943	27	-16943	5prime_fragment	FALSE	canonical	3	40	junction_19	9.4058033044748	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCTGCTAACAATGACTG	NA	False	NA	NA	False	AATATA	-16	NA	101687825	101574523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_101575722_101576008_101576125_101580789_101580892_101584717_101584848_101584977_101585057_101588279_101588360_101588913_101589071_101598489_101598630_101599131_101599224_101600701_101600879_101603170_101603341_101612895_101612975_101617073_101617219_101618570_101618681_101629682_101629818_101636232_101636312_101641007_101641116_101641791_101641888_101652647_101652771_101653757_101653812_101659516_101659664_101660922_101661022_101664943_101665025_101669193_101669277_101680148_101680318_101682686_101682735_101685826_101685986_101687452
ENSMUSG00000034064.15_1	chr16	-	2310	16	Fusion	ENSMUSG00000002846.10_ENSMUSG00000034064.15	novel	1573	7	NA	NA	25	8	multi-exon	FALSE	canonical	3	59	junction_6	371.529176362892	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATCGCCTAATCATGC	6291	False	NA	-8	True	AGTAAA	-30	NA	38370559	38318700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
ENSMUSG00000034064.15_20	chr16	-	2684	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	66	8	30	-5	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	1114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGTAACCATTGGCTCCT	6296	False	NA	-9	True	NA	NA	NA	38370554	38345506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
ENSMUSG00000034064.15_21	chr16	-	2886	11	FSM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	31	5	31	-5	multi-exon	FALSE	canonical	3	209	junction_10	237.918389369128	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGTAACCATTGGCTCCT	6297	False	NA	-9	True	NA	NA	NA	38370553	38345506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
ENSMUSG00000034064.15_22	chr16	-	3337	10	ISM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	31	0	31	0	intron_retention	FALSE	canonical	3	921	junction_4	40.8985495833861	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCATTGGCTCCTCATTT	6297	False	NA	-4	True	NA	NA	NA	38370553	38345501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704
ENSMUSG00000034066.14_0	chr1	+	3708	27	FSM	ENSMUSG00000034066.14	ENSMUST00000120301.8	3937	27	34	195	1	-195	multi-exon	FALSE	canonical	0	0	junction_19	3.25017068281892	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACCAGCATCCCCTTTG	NA	False	NA	NA	False	NA	NA	NA	93439834	93549503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_93439907_93456290_93456502_93487957_93488063_93488865_93488909_93491030_93491110_93495138_93495237_93496802_93496918_93497594_93497743_93502092_93502189_93504091_93504256_93504544_93504614_93505369_93505428_93507461_93507721_93527644_93527824_93531099_93531190_93531931_93532066_93533063_93533146_93535154_93535393_93537697_93537829_93540113_93540183_93540839_93540930_93545273_93545357_93546224_93546344_93546614_93546773_93547875_93547984_93548214_93548367_93548945
ENSMUSG00000034071.16_0	chr7	-	5123	4	FSM	ENSMUSG00000034071.16	ENSMUST00000080348.12	2591	4	74	-2606	74	2606	multi-exon	FALSE	canonical	2	3	junction_1	2.86744175568088	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGCCACTTATACATCT	NA	False	NA	-12	True	NA	NA	NA	12156604	12146473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12151146_12152469_12152594_12155734_12155774_12156316
ENSMUSG00000034071.16_1	chr7	-	4759	3	FSM	ENSMUSG00000034071.16	ENSMUST00000120220.3	2195	3	153	-2717	3	2607	multi-exon	FALSE	canonical	1	1	junction_1	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGCCACTTATACATCTG	NA	False	NA	-11	True	NA	NA	NA	12156363	12146472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12151146_12155734_12155774_12156316
ENSMUSG00000034075.11_0	chr2	-	4466	12	FSM	ENSMUSG00000034075.11	ENSMUST00000035840.6	4706	12	67	173	67	-173	multi-exon	FALSE	canonical	3	249	junction_5	28.4648543626047	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGTCCCCCCTGACTTG	NA	False	NA	-8	True	AATAAA	-15	NA	84545457	84518486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84519789_84520193_84521054_84521469_84521583_84522229_84522354_84522676_84522810_84523692_84523785_84524658_84524762_84524913_84525087_84526586_84526745_84532676_84532799_84540661_84541817_84545326
ENSMUSG00000034075.11_1	chr2	-	3884	11	ISM	ENSMUSG00000034075.11	ENSMUST00000035840.6	4706	12	4159	173	3665	-173	3prime_fragment	FALSE	canonical	3	249	junction_5	26.9927768115842	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGTCCCCCCTGACTTG	NA	False	NA	-8	True	AATAAA	-15	NA	84541365	84518486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84519789_84520193_84521054_84521469_84521583_84522229_84522354_84522676_84522810_84523692_84523785_84524658_84524762_84524913_84525087_84526586_84526745_84532676_84532799_84540661
ENSMUSG00000034083.17_0	chr6	+	1480	11	FSM	ENSMUSG00000034083.17	ENSMUST00000037783.7	1752	11	21	251	-1	-251	multi-exon	FALSE	canonical	3	160	junction_7	17.7876361554873	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCATGCTGGTTGTATTT	NA	False	NA	8	True	TATAAA	-18	NA	91855054	91876573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050_91865232_91867774_91867871_91869836_91869980_91870386_91870482_91872194_91872328_91875127_91875281_91876272
ENSMUSG00000034083.17_1	chr6	+	2155	3	FSM	ENSMUSG00000034083.17	ENSMUST00000138868.8	3980	3	20	1805	1	-1805	multi-exon	FALSE	canonical	3	200	junction_1	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	91855053	91860163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_91855168_91857237_91857343_91858227
ENSMUSG00000034083.17_2	chr6	+	1726	11	NNC	ENSMUSG00000034083.17	novel	1752	11	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_9	55.3502484185934	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATACTGAGGAACTTGT	NA	False	NA	7	True	TATAAA	-11	NA	91855051	91876819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050_91865232_91867774_91867871_91869836_91869980_91870386_91870482_91872194_91872328_91875130_91875281_91876272
ENSMUSG00000034088.16_1	chr1	-	4432	28	FSM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	-29	1828	-15	-6	multi-exon	FALSE	canonical	3	431	junction_27	59.547263104276	760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAACGTTTGCCCTCTTC	NA	False	NA	NA	False	AATAAA	-21	NA	93406552	93335489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
ENSMUSG00000034088.16_3	chr1	-	1647	1	ISM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	71206	9	33197	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAGATGCAGTGTGAT	8194	False	NA	-19	True	AATAAA	-5	NA	93335317	93333670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_93333700_93335300
ENSMUSG00000034088.16_4	chr1	-	4379	28	FSM	ENSMUSG00000034088.16	ENSMUST00000042498.14	4427	28	37	11	0	-11	multi-exon	FALSE	canonical	3	54	junction_27	104.811974833924	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCAAAACGTTTGCCC	NA	False	NA	NA	False	AATAAA	-16	NA	93373371	93335494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93373301
ENSMUSG00000034088.16_6	chr1	-	3264	21	ISM	ENSMUSG00000034088.16	ENSMUST00000042498.14	4427	28	15452	11	10558	-11	3prime_fragment	FALSE	canonical	3	454	junction_10	59.1515849322738	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCAAAACGTTTGCCC	NA	False	NA	NA	False	AATAAA	-16	NA	93357956	93335494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819
ENSMUSG00000034101.15_0	chr2	-	5326	19	NIC	ENSMUSG00000034101.15	novel	5380	19	NA	NA	24	-2	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	52.6901319034219	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84481060	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_84433245_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
ENSMUSG00000034101.15_1	chr2	-	5340	19	FSM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	38	2	13	-2	multi-exon	FALSE	canonical	3	163	junction_18	37.1560356827033	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84481071	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
ENSMUSG00000034101.15_11	chr2	-	5033	18	FSM	ENSMUSG00000034101.15	ENSMUST00000099941.9	5783	18	36	714	31	-2	multi-exon	FALSE	canonical	3	26	junction_17	58.4555549380398	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84481053	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84480749
ENSMUSG00000034101.15_16	chr2	-	4985	17	NIC	ENSMUSG00000034101.15	novel	5783	18	NA	NA	16	-2	combination_of_known_junctions	FALSE	canonical	3	26	junction_16	64.3316298079724	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84481068	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84480749
ENSMUSG00000034101.15_19	chr2	-	5259	17	FSM	ENSMUSG00000034101.15	ENSMUST00000066177.10	5044	17	-217	2	13	-2	multi-exon	FALSE	canonical	3	59	junction_8	59.0602182098915	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84481071	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
ENSMUSG00000034101.15_2	chr2	-	5455	20	FSM	ENSMUSG00000034101.15	ENSMUST00000067232.10	6119	20	-48	712	16	-2	multi-exon	FALSE	canonical	3	20	junction_18	71.3035336138201	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84481068	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84456363_84456482_84480749
ENSMUSG00000034101.15_3	chr2	-	5274	18	FSM	ENSMUSG00000034101.15	ENSMUST00000111697.9	5294	18	16	4	16	-2	multi-exon	FALSE	canonical	3	106	junction_2	44.1949127323348	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84481068	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
ENSMUSG00000034101.15_6	chr2	-	1752	1	ISM	ENSMUSG00000034101.15	ENSMUST00000111696.8	6281	19	48209	714	7141	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	9907	False	NA	-40	True	AATAAA	-14	NA	84432880	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84431100_84432900
ENSMUSG00000034101.15_7	chr2	-	5324	18	NIC	ENSMUSG00000034101.15	novel	6170	19	NA	NA	11	-2	combination_of_known_junctions	FALSE	canonical	3	59	junction_9	52.9317638691323	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84481073	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
ENSMUSG00000034105.10_0	chr8	-	3016	8	FSM	ENSMUSG00000034105.10	ENSMUST00000049156.7	3085	8	15	54	-5	-54	multi-exon	TRUE	canonical	3	25	junction_5	4.74664220738176	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCAAGTGTCTTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	120505140	120486868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_120488570_120489030_120489211_120490674_120490794_120494804_120495234_120497979_120498125_120499112_120499344_120500010_120500180_120505098
ENSMUSG00000034105.10_2	chr8	-	3192	8	NIC	ENSMUSG00000034105.10	novel	3085	8	NA	NA	22	-63	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	11.4855721384239	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGCCTGGCAAGTGTC	NA	False	NA	NA	False	NA	NA	NA	120505111	120486877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_120488570_120489030_120489211_120490674_120490794_120494804_120495234_120497979_120498125_120499112_120499344_120500010_120500180_120504884
ENSMUSG00000034108.7_2	chr19	-	1002	8	FSM	ENSMUSG00000034108.7	ENSMUST00000037246.7	1067	8	63	2	1	-2	multi-exon	FALSE	canonical	3	527	junction_5	30.737864703499	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTGTGTCTCTGTGTTC	NA	False	NA	-9	True	ATTAAA	-18	NA	4889297	4875395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884200_4884339_4888858_4888932_4889224
ENSMUSG00000034108.7_3	chr19	-	977	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236451.2	984	8	6	1	6	-1	multi-exon	FALSE	canonical	3	13	junction_5	206.828727330078	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTGTGTCTCTGTGTTCT	NA	False	NA	-8	True	ATTAAA	-19	NA	4889292	4875394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884221_4884339_4888858_4888932_4889224
ENSMUSG00000034108.7_8	chr19	-	927	8	NIC	ENSMUSG00000034108.7	novel	1067	8	NA	NA	6	-1	combination_of_known_splicesites	FALSE	canonical	3	13	junction_5	206.828727330078	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTGTGTCTCTGTGTTCT	NA	False	NA	-8	True	ATTAAA	-19	NA	4889292	4875394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883476_4884200_4884339_4888858_4888932_4889224
ENSMUSG00000034109.16_1	chr3	-	4148	15	FSM	ENSMUSG00000034109.16	ENSMUST00000038563.14	5546	15	-5	1403	-3	-8	multi-exon	FALSE	canonical	2	2	junction_9	9.18989018610413	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGATAAGTCTTTTAAAGC	NA	False	NA	NA	False	AATAAA	-14	NA	75864241	75783793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_75785485_75785952_75786025_75793581_75793651_75793979_75794148_75797828_75797939_75799195_75799279_75800089_75800344_75802141_75802445_75805277_75805440_75810553_75810637_75813705_75813857_75815436_75815491_75817315_75817366_75818881_75818957_75863418
ENSMUSG00000034109.16_17	chr3	-	1125	1	ISM	ENSMUSG00000034109.16	ENSMUST00000038563.14	5546	15	79299	1422	1378	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAACTTATAAAAAGTTA	NA	False	NA	NA	False	NA	NA	NA	75784937	75783812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_75783800_75784900
ENSMUSG00000034109.16_18	chr3	-	3122	14	ISM	ENSMUSG00000034109.16	ENSMUST00000117242.8	4551	16	305	9149	6	1439	5prime_fragment	FALSE	canonical	3	22	junction_6	5.18646394801156	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCCAGCCGAGTCACAC	NA	False	NA	NA	False	NA	NA	NA	75863951	75792638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_75793651_75793979_75794148_75797828_75797939_75799195_75799279_75800089_75800344_75802141_75802445_75805277_75805440_75809707_75809792_75810553_75810637_75813705_75813857_75815436_75815491_75817315_75817366_75818881_75818957_75863418
ENSMUSG00000034109.16_2	chr3	-	4227	16	FSM	ENSMUSG00000034109.16	ENSMUST00000117242.8	4551	16	24	300	4	-4	multi-exon	FALSE	canonical	3	22	junction_8	6.26950290427133	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGTCTTTTAAAGCATAT	NA	False	NA	NA	False	AATAAA	-18	NA	75864232	75783789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_75785485_75785952_75786025_75793581_75793651_75793979_75794148_75797828_75797939_75799195_75799279_75800089_75800344_75802141_75802445_75805277_75805440_75809707_75809792_75810553_75810637_75813705_75813857_75815436_75815491_75817315_75817366_75818881_75818957_75863418
ENSMUSG00000034109.16_6	chr3	-	2626	8	ISM	ENSMUSG00000034109.16	ENSMUST00000117242.8	4551	16	61936	304	-1931	-8	3prime_fragment	FALSE	canonical	3	24	junction_7	6.5621051873462	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGATAAGTCTTTTAAAGC	NA	False	NA	NA	False	AATAAA	-14	NA	75802320	75783793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_75785485_75785952_75786025_75793581_75793651_75793979_75794148_75797828_75797939_75799195_75799279_75800089_75800344_75802141
ENSMUSG00000034110.9_0	chr5	+	3570	4	FSM	ENSMUSG00000034110.9	ENSMUST00000040616.9	4291	4	27	694	27	-694	multi-exon	FALSE	canonical	3	21	junction_2	1.88561808316413	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGTAGTTTGGCCTGTTT	1882	False	NA	NA	False	AATAAA	-16	NA	130173728	130183953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_130174068_130176894_130177065_130180511_130180691_130181071
ENSMUSG00000034110.9_1	chr5	+	3634	4	NIC	ENSMUSG00000034110.9	novel	4291	4	NA	NA	-30	-701	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	8.9566858950296	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTGGGAAGTAGTTTGG	1888	False	NA	NA	False	AATAAA	-9	NA	130173734	130183946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_130174068_130176817_130177065_130180511_130180691_130181071
ENSMUSG00000034110.9_5	chr5	+	2482	1	ISM	ENSMUSG00000034110.9	ENSMUST00000040616.9	4291	4	7768	696	7525	-696	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAAGTAGTTTGGCCTGT	9623	False	NA	NA	False	AATAAA	-14	NA	130181469	130183951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_130181500_130184000
ENSMUSG00000034111.7_0	chr12	-	7276	6	FSM	ENSMUSG00000034111.7	ENSMUST00000037418.7	7409	6	127	6	127	-6	multi-exon	FALSE	canonical	3	17	junction_3	4.87442304278158	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAATATTTGAGTTCTTT	7872	False	NA	-2	True	AATAAA	-17	NA	87247101	87213016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87219406_87220821_87221128_87221314_87221442_87223407_87223538_87228162_87228245_87246859
ENSMUSG00000034111.7_1	chr12	-	3274	1	ISM	ENSMUSG00000034111.7	ENSMUST00000037418.7	7409	6	30936	8	30936	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAAAATATTTGAGTTCT	8816	False	NA	-4	True	AATAAA	-15	NA	87216292	87213018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_87213000_87216300
ENSMUSG00000034111.7_2	chr12	-	7151	7	NNC	ENSMUSG00000034111.7	novel	7409	6	NA	NA	97	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9.26312882106017	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAAAATATTTGAGTTCT	7842	False	NA	-4	True	AATAAA	-15	NA	87247131	87213018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_87219406_87220821_87220880_87221032_87221128_87221314_87221442_87223407_87223538_87228162_87228245_87246859
ENSMUSG00000034112.10_0	chr8	+	2476	21	NNC	ENSMUSG00000034112.10	novel	3222	27	NA	NA	33724	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	2.80133896556629	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCATCTCTCTCTCTGCT	NA	False	NA	NA	False	ATTAAA	-21	NA	120460532	120484455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_120460562_120461026_120461177_120461248_120461318_120461965_120462042_120465132_120465200_120469068_120469194_120469331_120469430_120471056_120471159_120472252_120472343_120474352_120474455_120474893_120475051_120475762_120475934_120476511_120476610_120476699_120476751_120477898_120478066_120479526_120479596_120479682_120479800_120480940_120481089_120482276_120482376_120482713_120482856_120484106
ENSMUSG00000034112.10_4	chr8	+	2445	20	ISM	ENSMUSG00000034112.10	ENSMUST00000095171.5	3222	27	34276	6	34215	-6	3prime_fragment	FALSE	canonical	1	2	junction_2	2.61680060940127	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTAACTCATCTCTCTCT	NA	False	NA	NA	False	ATTAAA	-16	NA	120461023	120484450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_120461177_120461248_120461318_120461965_120462042_120465132_120465200_120469068_120469194_120469331_120469430_120471056_120471159_120472252_120472343_120474352_120474455_120474893_120475051_120475762_120475934_120476511_120476610_120476699_120476751_120477898_120478066_120479526_120479596_120479682_120479800_120480940_120481089_120482276_120482376_120482713_120482856_120484106
ENSMUSG00000034118.16_0	chr5	+	1989	6	FSM	ENSMUSG00000034118.16	ENSMUST00000040721.9	2050	6	56	5	56	-5	multi-exon	FALSE	canonical	3	139	junction_2	10.899541274751	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCACTCAATGGTCCCGTT	NA	False	NA	12	True	AATAAA	-13	NA	130108266	130164565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_130108503_130130430_130131377_130143308_130143508_130158348_130158400_130163299_130163340_130164048
ENSMUSG00000034118.16_9	chr5	+	1427	5	ISM	ENSMUSG00000034118.16	ENSMUST00000040721.9	2050	6	22546	5	8327	-5	3prime_fragment	FALSE	canonical	3	139	junction_1	12.1346610995116	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCACTCAATGGTCCCGTT	NA	False	NA	12	True	AATAAA	-13	NA	130130756	130164565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_130131377_130143308_130143508_130158348_130158400_130163299_130163340_130164048
ENSMUSG00000034120.19_0	chr11	-	2943	2	NIC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	1	-9	intron_retention	FALSE	canonical	3	1775	junction_1	0	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTTTTGAGAATGTGTC	6004	False	NA	-19	True	ATTAAA	-17	NA	116743919	116740740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116743158_116743393
ENSMUSG00000034120.19_1	chr11	-	1884	3	FSM	ENSMUSG00000034120.19	ENSMUST00000092404.13	1899	3	1	14	1	-9	multi-exon	FALSE	canonical	3	1775	junction_2	41.5	2156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTTTTGAGAATGTGTC	6004	False	NA	-19	True	ATTAAA	-17	NA	116743919	116740740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116741788_116742846_116743158_116743393
ENSMUSG00000034120.19_2	chr11	-	1387	4	NIC	ENSMUSG00000034120.19	novel	1336	5	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	235	junction_1	746.295890083521	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGAATGTGTCCTGGT	6004	False	NA	-14	True	ATTAAA	-22	NA	116743919	116740735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116741180_116741681_116741788_116742846_116743158_116743393
ENSMUSG00000034120.19_4	chr11	-	1443	1	NIC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	219	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGAATGTGTCCTGGT	7745	False	NA	-14	True	ATTAAA	-22	NA	116742178	116740735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116740700_116742200
ENSMUSG00000034121.13_0	chr11	+	2410	18	NNC	ENSMUSG00000034121.13	novel	2194	7	NA	NA	-5017	-5	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	31.5170080957562	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCCTCTGTGGACTCT	1439	False	NA	13	True	TATAAA	-15	NA	87739023	87754624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_87739055_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
ENSMUSG00000034121.13_24	chr11	+	2482	18	FSM	ENSMUSG00000034121.13	ENSMUST00000038196.7	2499	18	12	5	0	-5	multi-exon	FALSE	canonical	3	107	junction_1	22.9555008070187	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCCTCTGTGGACTCT	6468	False	NA	13	True	TATAAA	-15	NA	87744052	87754624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
ENSMUSG00000034126.6_0	chr12	-	4624	21	FSM	ENSMUSG00000034126.6	ENSMUST00000037788.6	5064	21	433	7	5	-7	multi-exon	FALSE	canonical	3	48	junction_16	10.2834819006016	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTACATTGTTCTTGTG	6082	False	NA	NA	False	AATAAA	-15	NA	87194243	87153641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87156068_87156777_87156893_87157075_87157217_87158110_87158217_87158297_87158358_87158652_87158725_87163304_87163382_87164158_87164251_87164712_87164865_87166345_87166425_87169615_87169686_87171585_87171653_87174075_87174186_87175726_87175810_87177062_87177170_87178445_87178606_87180133_87180243_87182268_87182378_87184776_87184882_87186417_87186503_87193944
ENSMUSG00000034135.16_0	chr9	+	6247	25	FSM	ENSMUSG00000034135.16	ENSMUST00000126865.8	6287	25	17	23	17	-17	multi-exon	FALSE	canonical	3	33	junction_17	28.1424945589406	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGATTATGTACTAACGC	NA	False	NA	0	True	AATAAA	-2	NA	45924134	46135469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_45924429_46034514_46034632_46038307_46038372_46066676_46066839_46089169_46089295_46089729_46089854_46105460_46105580_46106117_46106229_46106463_46106608_46107090_46107169_46107281_46107392_46109444_46109599_46109849_46110006_46113297_46113369_46115503_46115648_46119219_46119371_46120015_46120142_46120361_46120448_46120852_46120963_46121773_46122114_46122967_46123861_46130723_46130888_46131507_46131641_46132364_46132533_46133366
ENSMUSG00000034135.16_1	chr9	+	2638	14	ISM	ENSMUSG00000034135.16	ENSMUST00000120463.9	4180	24	-19	19388	-19	2	5prime_fragment	FALSE	canonical	3	79	junction_9	9.59474708356782	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCGGGGAAACTGTGGGTG	NA	False	NA	8	True	AATAAA	-16	NA	45924142	46114185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_45924429_46034514_46034632_46038307_46038372_46066676_46066839_46089169_46089295_46089729_46089854_46105460_46105580_46106117_46106229_46106463_46106608_46107090_46107169_46107281_46107392_46109444_46109599_46109849_46110006_46113297
ENSMUSG00000034135.16_33	chr9	+	2550	6	ISM	ENSMUSG00000034135.16	ENSMUST00000120463.9	4180	24	197850	-883	-8857	883	3prime_fragment	FALSE	canonical	3	47	junction_1	6.54217089351845	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAGAAATGTTTAACCA	2991	False	NA	NA	False	AAAAAG	-19	NA	46122011	46134456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_46122114_46122967_46123861_46130723_46130888_46131507_46131641_46132364_46132533_46133366
ENSMUSG00000034135.16_36	chr9	+	1339	1	ISM	ENSMUSG00000034135.16	ENSMUST00000126865.8	6287	25	210027	9	3276	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACGCTGATATGTTGTTTG	6909	False	NA	14	True	AATAAA	-16	NA	46134144	46135483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_46134100_46135500
ENSMUSG00000034135.16_40	chr9	+	6111	24	FSM	ENSMUSG00000034135.16	ENSMUST00000120463.9	4180	24	-24	-1907	20	-6	multi-exon	FALSE	canonical	2	8	junction_14	29.7947610878116	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAACGCTGATATGTTGT	NA	False	NA	11	True	AATAAA	-13	NA	45924137	46135480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_45924429_46034514_46034632_46038307_46038372_46066676_46066839_46089169_46089295_46089729_46089854_46105460_46105580_46106117_46106229_46106463_46106608_46107090_46107169_46107281_46107392_46109444_46109599_46109849_46110006_46113297_46113369_46119219_46119371_46120015_46120142_46120361_46120448_46120852_46120963_46121773_46122114_46122967_46123861_46130723_46130888_46131507_46131641_46132364_46132533_46133366
ENSMUSG00000034145.15_0	chr12	+	3228	24	FSM	ENSMUSG00000034145.15	ENSMUST00000146292.8	3455	24	221	6	-51	-1	multi-exon	FALSE	canonical	1	1	junction_6	2.14678728619626	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAAAACCATGCTGAAT	NA	False	NA	NA	False	ATTAAA	-21	NA	87073286	87136806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_87073365_87099599_87099663_87103161_87103372_87103896_87103977_87104404_87104487_87108294_87108333_87112246_87112390_87113669_87113719_87115896_87116006_87118041_87118116_87118680_87118762_87118871_87118996_87119631_87119766_87121851_87121975_87122384_87122539_87123172_87123280_87123965_87124053_87124666_87124733_87128571_87128735_87128972_87129079_87129463_87129632_87131235_87131346_87133128_87133201_87135999
ENSMUSG00000034145.15_1	chr12	+	3391	25	NIC	ENSMUSG00000034145.15	novel	3327	25	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	2.29090896564855	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAACCATGCTGAATC	NA	False	NA	NA	False	ATTAAA	-22	NA	87073353	87136807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_87073445_87085215_87085365_87099599_87099663_87103161_87103372_87103896_87103977_87104404_87104487_87108294_87108333_87112246_87112390_87113669_87113719_87115896_87116006_87118041_87118116_87118680_87118762_87118871_87118996_87119631_87119766_87121851_87121975_87122384_87122539_87123172_87123280_87123965_87124053_87124666_87124733_87128571_87128735_87128972_87129079_87129463_87129632_87131235_87131346_87133128_87133201_87135999
ENSMUSG00000034145.15_10	chr12	+	3455	25	NIC	ENSMUSG00000034145.15	novel	3327	25	NA	NA	36	0	combination_of_known_junctions	TRUE	canonical	1	1	junction_3	2.27264835721577	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAACCATGCTGAATC	NA	False	NA	NA	False	ATTAAA	-22	NA	87073101	87136807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_87073365_87099599_87099663_87102218_87102260_87103161_87103372_87103896_87103977_87104404_87104487_87108294_87108333_87112246_87112390_87113669_87113719_87115896_87116006_87118041_87118116_87118680_87118762_87118871_87118996_87119631_87119766_87121851_87121975_87122384_87122539_87123172_87123280_87123965_87124053_87124666_87124733_87128571_87128735_87128972_87129079_87129463_87129632_87131235_87131346_87133128_87133201_87135999
ENSMUSG00000034152.7_1	chr13	-	2396	13	FSM	ENSMUSG00000034152.7	ENSMUST00000035934.7	4922	13	21	2505	21	6	multi-exon	FALSE	canonical	3	174	junction_12	37.5695651055774	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGCTTGGTGTGATGTCA	7194	False	NA	-5	True	ATTAAA	-17	NA	74356807	74320111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74356776
ENSMUSG00000034152.7_3	chr13	-	2365	12	ISM	ENSMUSG00000034152.7	ENSMUST00000035934.7	4922	13	1611	2506	-5	5	3prime_fragment	FALSE	canonical	3	205	junction_10	31.3753601276622	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGCTTGGTGTGATGTC	8784	False	NA	-6	True	ATTAAA	-16	NA	74355217	74320112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025
ENSMUSG00000034152.7_7	chr13	-	3211	13	NIC	ENSMUSG00000034152.7	novel	4922	13	NA	NA	40	5	combination_of_known_junctions	FALSE	canonical	3	44	junction_12	65.7558615891643	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGCTTGGTGTGATGTC	7213	False	NA	-6	True	ATTAAA	-16	NA	74356788	74320112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74355941
ENSMUSG00000034154.16_1	chr2	-	1114	1	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	103527	5	65520	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATCAAAGTGTCTGTGG	4143	False	NA	-5	True	AATAAA	-21	NA	119204641	119203527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119203500_119204600
ENSMUSG00000034154.16_13	chr2	-	2660	10	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	70800	3	32793	-3	3prime_fragment	FALSE	canonical	3	43	junction_7	7.03606231066114	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCAAAGTGTCTGTGGTC	NA	False	NA	-3	True	AATAAA	-23	NA	119237368	119203525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296
ENSMUSG00000034154.16_14	chr2	-	2036	4	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	97599	3	59592	-3	3prime_fragment	FALSE	canonical	3	52	junction_3	6.79869268479038	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCAAAGTGTCTGTGGTC	NA	False	NA	-3	True	AATAAA	-23	NA	119210569	119203525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446
ENSMUSG00000034154.16_16	chr2	-	2875	11	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	65126	4	27119	-4	3prime_fragment	FALSE	canonical	3	43	junction_7	7.41687265631546	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCAAAGTGTCTGTGGT	NA	False	NA	-4	True	AATAAA	-22	NA	119243042	119203526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296_119237425_119242882
ENSMUSG00000034154.16_18	chr2	-	1566	2	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	100311	4	62304	-4	3prime_fragment	FALSE	canonical	3	56	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCAAAGTGTCTGTGGT	927	False	NA	-4	True	AATAAA	-22	NA	119207857	119203526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827
ENSMUSG00000034154.16_19	chr2	-	2121	5	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	95722	7	57715	-7	3prime_fragment	FALSE	canonical	3	50	junction_4	6.98212002188447	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAATCAAAGTGTCTGT	NA	False	NA	-7	True	AATAAA	-19	NA	119212446	119203529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390
ENSMUSG00000034154.16_2	chr2	-	4060	21	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	44441	7	6434	-7	3prime_fragment	FALSE	canonical	3	35	junction_18	8.74699948553788	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAATCAAAGTGTCTGT	7491	False	NA	-7	True	AATAAA	-19	NA	119263727	119203529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296_119237425_119242882_119243109_119248801_119248943_119254085_119254258_119255739_119255834_119256185_119256254_119257069_119257204_119257380_119257549_119258957_119259044_119261468_119261587_119262408_119262494_119263671
ENSMUSG00000034154.16_21	chr2	-	4779	27	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	32110	7	-5897	-7	3prime_fragment	FALSE	canonical	3	27	junction_21	10.3734983229199	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAATCAAAGTGTCTGT	1951	False	NA	-7	True	AATAAA	-19	NA	119276058	119203529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296_119237425_119242882_119243109_119248801_119248943_119254085_119254258_119255739_119255834_119256185_119256254_119257069_119257204_119257380_119257549_119258957_119259044_119261468_119261587_119262408_119262494_119263671_119263815_119264629_119264690_119269855_119269952_119272093_119272175_119272863_119273074_119274927_119274996_119275941
ENSMUSG00000034154.16_3	chr2	-	6286	36	FSM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	61	7	-13	-7	multi-exon	FALSE	canonical	3	19	junction_35	12.9307732931632	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAATCAAAGTGTCTGT	NA	False	NA	-7	True	AATAAA	-19	NA	119308107	119203529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296_119237425_119242882_119243109_119248801_119248943_119254085_119254258_119255739_119255834_119256185_119256254_119257069_119257204_119257380_119257549_119258957_119259044_119261468_119261587_119262408_119262494_119263671_119263815_119264629_119264690_119269855_119269952_119272093_119272175_119272863_119273074_119274927_119274996_119275941_119276138_119277336_119277541_119278685_119278740_119280483_119280699_119281810_119281932_119284536_119284699_119286865_119286934_119287052_119287223_119288561_119288748_119307859
ENSMUSG00000034154.16_4	chr2	-	4638	26	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	33197	7	-4810	-7	3prime_fragment	FALSE	canonical	3	27	junction_21	10.4156804866509	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAATCAAAGTGTCTGT	3038	False	NA	-7	True	AATAAA	-19	NA	119274971	119203529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296_119237425_119242882_119243109_119248801_119248943_119254085_119254258_119255739_119255834_119256185_119256254_119257069_119257204_119257380_119257549_119258957_119259044_119261468_119261587_119262408_119262494_119263671_119263815_119264629_119264690_119269855_119269952_119272093_119272175_119272863_119273074_119274927
ENSMUSG00000034154.16_5	chr2	-	3616	17	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	50722	4	12715	-4	3prime_fragment	FALSE	canonical	3	36	junction_12	7.4684231100012	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCAAAGTGTCTGTGGT	NA	False	NA	-4	True	AATAAA	-22	NA	119257446	119203526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296_119237425_119242882_119243109_119248801_119248943_119254085_119254258_119255739_119255834_119256185_119256254_119257069_119257204_119257380
ENSMUSG00000034154.16_6	chr2	-	5802	34	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	21000	3	-17007	-3	3prime_fragment	FALSE	canonical	3	21	junction_28	12.2288403486107	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCAAAGTGTCTGTGGTC	NA	False	NA	-3	True	AATAAA	-23	NA	119287168	119203525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296_119237425_119242882_119243109_119248801_119248943_119254085_119254258_119255739_119255834_119256185_119256254_119257069_119257204_119257380_119257549_119258957_119259044_119261468_119261587_119262408_119262494_119263671_119263815_119264629_119264690_119269855_119269952_119272093_119272175_119272863_119273074_119274927_119274996_119275941_119276138_119277336_119277541_119278685_119278740_119280483_119280699_119281810_119281932_119284536_119284699_119286865_119286934_119287052
ENSMUSG00000034154.16_7	chr2	-	2462	8	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	84789	7	46782	-7	3prime_fragment	FALSE	canonical	3	43	junction_7	7.41482244134913	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAATCAAAGTGTCTGT	7017	False	NA	-7	True	AATAAA	-19	NA	119223379	119203529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333
ENSMUSG00000034154.16_9	chr2	-	6038	35	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	19421	7	-18586	-7	3prime_fragment	TRUE	canonical	3	21	junction_28	12.5607175868888	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAATCAAAGTGTCTGT	NA	False	NA	-7	True	AATAAA	-19	NA	119288747	119203529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296_119237425_119242882_119243109_119248801_119248943_119254085_119254258_119255739_119255834_119256185_119256254_119257069_119257204_119257380_119257549_119258957_119259044_119261468_119261587_119262408_119262494_119263671_119263815_119264629_119264690_119269855_119269952_119272093_119272175_119272863_119273074_119274927_119274996_119275941_119276138_119277336_119277541_119278685_119278740_119280483_119280699_119281810_119281932_119284536_119284699_119286865_119286934_119287052_119287223_119288561
ENSMUSG00000034157.13_10	chr12	+	4091	5	FSM	ENSMUSG00000034157.13	ENSMUST00000190588.2	573	5	-44	-3474	-8	-5	multi-exon	FALSE	canonical	1	1	junction_2	47.8767950055139	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAATTTGGTCTATTTG	NA	False	NA	2	True	AATAAA	-14	NA	86994219	87012131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_86994274_86999517_86999706_87006501_87006603_87007045_87007216_87008553
ENSMUSG00000034157.13_16	chr12	+	3938	3	FSM	ENSMUSG00000034157.13	ENSMUST00000191463.2	1499	3	85	-2524	85	-5	multi-exon	FALSE	canonical	3	99	junction_2	4	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAATTTGGTCTATTTG	NA	False	NA	2	True	AATAAA	-14	NA	86999515	87012131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_86999706_87007045_87007216_87008553
ENSMUSG00000034157.13_19	chr12	+	2876	1	ISM	ENSMUSG00000034157.13	ENSMUST00000187814.7	4098	4	15139	5	9825	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAATTTGGTCTATTTG	NA	False	NA	2	True	AATAAA	-14	NA	87009255	87012131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_87009300_87012100
ENSMUSG00000034157.13_2	chr12	+	4051	4	FSM	ENSMUSG00000034157.13	ENSMUST00000187814.7	4098	4	42	5	-11	-5	multi-exon	FALSE	canonical	3	99	junction_3	3.2659863237109	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAATTTGGTCTATTTG	NA	False	NA	2	True	AATAAA	-14	NA	86994158	87012131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_86994274_86999517_86999706_87007045_87007216_87008553
ENSMUSG00000034157.13_3	chr12	+	4134	4	NIC	ENSMUSG00000034157.13	novel	4098	4	NA	NA	-21	-5	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	46.6976087896015	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAATTTGGTCTATTTG	NA	False	NA	2	True	AATAAA	-14	NA	86994148	87012131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_86994274_86999517_86999779_87007045_87007216_87008553
ENSMUSG00000034158.10_0	chr16	+	8599	4	FSM	ENSMUSG00000034158.10	ENSMUST00000078717.7	8604	4	-3	8	-3	-8	multi-exon	FALSE	canonical	3	130	junction_1	10.2089285540757	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGAGTTTCTTCTTGGT	NA	False	NA	14	True	AATAAA	-14	NA	37688747	37709212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_37689343_37697410_37697540_37698648_37698927_37701615
ENSMUSG00000034158.10_8	chr16	+	3618	1	ISM	ENSMUSG00000034158.10	ENSMUST00000078717.7	8604	4	16848	4	16848	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTCTTCTTGGTCCGG	NA	False	NA	18	True	AATAAA	-18	NA	37705598	37709216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_37705600_37709200
ENSMUSG00000034160.14_0	chrX	+	5249	23	NIC	ENSMUSG00000034160.14	novel	3840	23	NA	NA	-14	-12	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	134.849288387119	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCCCTTAACATGGCTT	NA	False	NA	3	True	AATAAA	-8	NA	100683685	100727945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100683717_100683823_100683929_100686581_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ENSMUSG00000034160.14_15	chrX	+	5350	22	FSM	ENSMUSG00000034160.14	ENSMUST00000044475.5	5384	22	30	4	0	-4	multi-exon	FALSE	canonical	3	202	junction_4	118.587682955494	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACATGGCTTGGTGTAGT	NA	False	NA	11	True	AATAAA	-16	NA	100683699	100727953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ENSMUSG00000034160.14_2	chrX	+	5227	23	FSM	ENSMUSG00000034160.14	ENSMUST00000119299.8	3840	23	20	-1407	-14	-4	multi-exon	FALSE	canonical	3	98	junction_1	138.801667470395	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACATGGCTTGGTGTAGT	NA	False	NA	11	True	AATAAA	-16	NA	100683685	100727953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_100683717_100683823_100683929_100686611_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ENSMUSG00000034160.14_33	chrX	+	5725	18	ISM	ENSMUSG00000034160.14	ENSMUST00000044475.5	5384	22	14463	3	-818	-3	3prime_fragment	FALSE	canonical	3	266	junction_15	98.6391136440531	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACATGGCTTGGTGTAGTT	NA	False	NA	12	True	AATAAA	-17	NA	100698132	100727954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ENSMUSG00000034160.14_4	chrX	+	8767	21	NIC	ENSMUSG00000034160.14	novel	5384	22	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	215	junction_1	109.796356952314	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACATGGCTTGGTGTAGTT	NA	False	NA	12	True	AATAAA	-17	NA	100683698	100727954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ENSMUSG00000034160.14_48	chrX	+	3117	7	ISM	ENSMUSG00000034160.14	ENSMUST00000147635.2	3521	17	17764	-1191	17764	-2	3prime_fragment	FALSE	canonical	3	266	junction_4	125.057875490599	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGCTTGGTGTAGTTT	9873	False	NA	13	True	AATAAA	-18	NA	100716714	100727955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ENSMUSG00000034160.14_51	chrX	+	2852	5	ISM	ENSMUSG00000034160.14	ENSMUST00000147635.2	3521	17	18239	-1190	18239	-3	3prime_fragment	FALSE	canonical	3	266	junction_2	89.9485964315175	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACATGGCTTGGTGTAGTT	NA	False	NA	12	True	AATAAA	-17	NA	100717189	100727954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ENSMUSG00000034160.14_53	chrX	+	2694	4	ISM	ENSMUSG00000034160.14	ENSMUST00000147635.2	3521	17	20832	-1189	20832	-4	3prime_fragment	FALSE	canonical	3	266	junction_1	13.3666251038423	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACATGGCTTGGTGTAGT	NA	False	NA	11	True	AATAAA	-16	NA	100719782	100727953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_100719908_100722314_100722568_100722829_100722954_100725761
ENSMUSG00000034160.14_54	chrX	+	2421	3	ISM	ENSMUSG00000034160.14	ENSMUST00000147635.2	3521	17	23513	-1190	23513	-3	3prime_fragment	FALSE	canonical	3	288	junction_2	5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACATGGCTTGGTGTAGTT	NA	False	NA	12	True	AATAAA	-17	NA	100722463	100727954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_100722568_100722829_100722954_100725761
ENSMUSG00000034160.14_56	chrX	+	1470	1	ISM	ENSMUSG00000034160.14	ENSMUST00000044475.5	5384	22	42816	2	27535	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGCTTGGTGTAGTTT	NA	False	NA	13	True	AATAAA	-18	NA	100726485	100727955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_100726500_100728000
ENSMUSG00000034160.14_6	chrX	+	5321	22	NIC	ENSMUSG00000034160.14	novel	3840	23	NA	NA	-1	-4	intron_retention	FALSE	canonical	3	162	junction_1	123.579218031398	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACATGGCTTGGTGTAGT	NA	False	NA	11	True	AATAAA	-16	NA	100683698	100727953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100683929_100686611_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
ENSMUSG00000034163.11_20	chr10	+	6035	34	ISM	ENSMUSG00000034163.11	ENSMUST00000036044.9	6957	35	5756	8	5756	-7	3prime_fragment	FALSE	canonical	3	77	junction_21	26.882186932769	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACAGTTAATAGTGGG	NA	False	NA	1	True	AATAAA	-13	NA	115226619	115268669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_115226972_115233909_115233975_115236619_115236819_115237513_115237738_115239104_115239226_115240104_115240203_115242257_115242468_115242638_115242804_115243779_115243918_115244775_115244898_115244997_115245148_115246433_115246609_115247103_115247236_115247624_115248168_115248261_115248372_115249866_115249999_115250100_115250223_115251143_115251246_115251524_115251645_115252643_115252828_115254546_115254734_115255676_115255866_115256546_115256785_115259109_115259216_115259288_115259488_115260462_115260558_115262940_115263052_115263302_115263408_115263529_115263696_115264765_115264867_115266557_115266660_115267307_115267348_115267607_115267671_115267800
ENSMUSG00000034163.11_32	chr10	+	3712	21	ISM	ENSMUSG00000034163.11	ENSMUST00000036044.9	6957	35	26933	8	-15413	-7	3prime_fragment	FALSE	canonical	3	77	junction_8	19.7683459095596	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACAGTTAATAGTGGG	NA	False	NA	1	True	AATAAA	-13	NA	115247796	115268669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_115248168_115248261_115248372_115249866_115249999_115250100_115250223_115251143_115251246_115251524_115251645_115252643_115252828_115254546_115254734_115255676_115255866_115256546_115256785_115259109_115259216_115259288_115259488_115260462_115260558_115262940_115263052_115263302_115263408_115263529_115263696_115264765_115264867_115266557_115266660_115267307_115267348_115267607_115267671_115267800
ENSMUSG00000034163.11_4	chr10	+	6942	35	FSM	ENSMUSG00000034163.11	ENSMUST00000036044.9	6957	35	7	8	7	-7	multi-exon	FALSE	canonical	3	77	junction_22	26.4839345439331	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACAGTTAATAGTGGG	NA	False	NA	1	True	AATAAA	-13	NA	115220870	115268669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_115221713_115226554_115226972_115233909_115233975_115236619_115236819_115237513_115237738_115239104_115239226_115240104_115240203_115242257_115242468_115242638_115242804_115243779_115243918_115244775_115244898_115244997_115245148_115246433_115246609_115247103_115247236_115247624_115248168_115248261_115248372_115249866_115249999_115250100_115250223_115251143_115251246_115251524_115251645_115252643_115252828_115254546_115254734_115255676_115255866_115256546_115256785_115259109_115259216_115259288_115259488_115260462_115260558_115262940_115263052_115263302_115263408_115263529_115263696_115264765_115264867_115266557_115266660_115267307_115267348_115267607_115267671_115267800
ENSMUSG00000034164.18_1	chr11	-	1937	15	FSM	ENSMUSG00000034164.18	ENSMUST00000062821.13	1947	15	9	1	-8	0	multi-exon	TRUE	canonical	3	8	junction_2	4.11815294439988	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCGCTTGGTCTCTATGT	7871	False	NA	NA	False	AATAAA	-18	NA	5102248	5056265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5056970_5060689_5060775_5066879_5066925_5078869_5078915_5079008_5079072_5079427_5079481_5079621_5079721_5080631_5080779_5081481_5081572_5081919_5082041_5084348_5084411_5085353_5085432_5093826_5093931_5094294_5094409_5102121
ENSMUSG00000034165.17_9	chr17	+	1947	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	24	6	24	0	multi-exon	FALSE	canonical	3	3602	junction_2	267.432701814868	5396	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAGGTGGCTCTTGTGA	NA	False	NA	NA	False	AATAAA	-9	NA	47904418	47910608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUSG00000034168.8_0	chr12	-	4085	1	FSM	ENSMUSG00000034168.8	ENSMUST00000038422.8	4098	1	9	4	9	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1059	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTCTGCCCTGAGTCAG	NA	False	NA	-18	True	AATAAA	-12	NA	86931563	86927478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_86927500_86931600
ENSMUSG00000034171.14_0	chr4	-	2479	15	FSM	ENSMUSG00000034171.14	ENSMUST00000049095.6	3827	15	224	1124	-5	400	multi-exon	FALSE	canonical	3	38	junction_1	8.32257809350258	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTGGCTGGCTGGGAT	NA	False	NA	NA	False	NA	NA	NA	115874899	115854989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_115855813_115856017_115856164_115856695_115856805_115857245_115857286_115857983_115858025_115858300_115858401_115859654_115859753_115860173_115860300_115861551_115861677_115861910_115861952_115862196_115862404_115862497_115862632_115862783_115862919_115865376_115865491_115874659
ENSMUSG00000034173.14_0	chr5	+	2443	4	FSM	ENSMUSG00000034173.14	ENSMUST00000041466.14	2492	4	40	9	-5	-9	multi-exon	FALSE	canonical	3	34	junction_3	2120.04764097414	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAGAAACCCTGTCTCAA	6045	False	NA	NA	False	AATAAA	-8	NA	129924603	129932455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129924694_129928023_129928274_129929185_129929337_129930503
ENSMUSG00000034173.14_2	chr5	+	3264	3	ISM	ENSMUSG00000034173.14	ENSMUST00000041466.14	2492	4	2551	7	2496	-7	3prime_fragment	FALSE	canonical	3	34	junction_2	2263.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAACCCTGTCTCAAAA	8556	False	NA	NA	False	AATAAA	-10	NA	129927114	129932457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_129928274_129929185_129929337_129930503
ENSMUSG00000034173.14_5	chr5	+	2545	5	FSM	ENSMUSG00000034173.14	ENSMUST00000077320.3	730	5	-26	-1789	-16	-9	multi-exon	FALSE	canonical	0	0	junction_1	1960.39592620981	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAGAAACCCTGTCTCAA	6034	False	NA	NA	False	AATAAA	-8	NA	129924592	129932455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129924694_129927843_129927935_129928023_129928274_129929185_129929337_129930503
ENSMUSG00000034175.14_12	chr11	+	1907	8	ISM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	508	0	1	0	intron_retention	FALSE	canonical	3	72	junction_2	52.4917875014944	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049433	5056091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432
ENSMUSG00000034175.14_2	chr11	+	1775	8	ISM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	739	0	57	0	3prime_fragment	FALSE	canonical	3	72	junction_1	52.1641835056998	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049664	5056091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034175.14_23	chr11	+	1842	9	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	65.8649185834159	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049428	5056091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_5049567_5049747_5049899_5050384_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034175.14_3	chr11	+	1824	9	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	64	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	76.5709434119758	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	9982	False	NA	16	True	AATAAA	-17	NA	5049140	5056091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_5049273_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034175.14_30	chr11	+	1627	8	FSM	ENSMUSG00000034175.14	ENSMUST00000109878.9	1611	8	-16	0	-16	0	multi-exon	FALSE	canonical	3	5	junction_1	73.7707424998528	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5050140	5056091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_5050227_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034175.14_4	chr11	+	1782	9	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	72.0831767821036	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049387	5056091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_5049478_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034175.14_5	chr11	+	1831	9	FSM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	502	0	-5	0	multi-exon	FALSE	canonical	3	72	junction_2	51.4605431374369	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049427	5056091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034175.14_9	chr11	+	1800	9	FSM	ENSMUSG00000034175.14	ENSMUST00000036320.12	1790	9	-10	0	-4	0	multi-exon	FALSE	canonical	3	31	junction_6	83.1500901983876	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049428	5056091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055180_5055314_5055432_5055718_5055799
ENSMUSG00000034187.19_1	chr11	-	3729	21	FSM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	34	3	2	-3	multi-exon	FALSE	canonical	3	278	junction_14	21.9246436687122	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTGTATAGACCAGTA	NA	False	NA	NA	False	AATAAA	-16	NA	103844848	103712610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
ENSMUSG00000034187.19_5	chr11	-	3777	22	NIC	ENSMUSG00000034187.19	novel	3766	21	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	14	junction_21	89.2116899491472	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTGTATAGACCAGTA	NA	False	NA	NA	False	AATAAA	-16	NA	103844848	103712610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103821901_103821950_103844795
ENSMUSG00000034189.6_0	chr8	-	3090	5	NIC	ENSMUSG00000034189.6	novel	3141	5	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	55.8496866598193	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCCCGCCACCAGAGGGT	NA	False	NA	-10	True	AATAAA	-19	NA	120301912	120288727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504_120294690_120301830
ENSMUSG00000034189.6_1	chr8	-	3131	5	FSM	ENSMUSG00000034189.6	ENSMUST00000036049.6	3141	5	10	0	2	0	multi-exon	TRUE	canonical	3	107	junction_4	18.9274932307477	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCCCGCCACCAGAGGGT	NA	False	NA	-10	True	AATAAA	-19	NA	120301912	120288727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504_120294731_120301830
ENSMUSG00000034189.6_3	chr8	-	2781	3	ISM	ENSMUSG00000034189.6	ENSMUST00000212517.2	2215	5	3563	-811	3563	0	3prime_fragment	FALSE	canonical	3	144	junction_1	4	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCCCGCCACCAGAGGGT	444	False	NA	-10	True	AATAAA	-19	NA	120293171	120288727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_120290877_120292382_120292611_120292767
ENSMUSG00000034189.6_8	chr8	-	1355	1	Genic_Genomic	ENSMUSG00000034189.6	novel	NA	NA	NA	NA	6657	5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCACCAGAGGGTCTTTT	3538	False	NA	-5	True	AATAAA	-24	NA	120290077	120288722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_120288700_120290100
ENSMUSG00000034190.10_0	chr14	-	2650	10	FSM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	-14	13	-7	-13	multi-exon	FALSE	canonical	3	245	junction_7	17.0583602471336	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAAACACCAGGTTTTG	NA	False	NA	-15	True	ATTAAA	-2	NA	69969997	69954461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69956947_69957196_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
ENSMUSG00000034190.10_7	chr14	-	2897	9	NIC	ENSMUSG00000034190.10	novel	2649	10	NA	NA	-8	-17	intron_retention	FALSE	canonical	3	245	junction_6	15.4495145554804	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAAAAACACCAGGT	NA	False	NA	-19	True	AAGAAA	-41	NA	69969998	69954465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
ENSMUSG00000034192.6_1	chr6	+	630	4	FSM	ENSMUSG00000034192.6	ENSMUST00000206947.2	618	4	-11	-1	-10	1	multi-exon	FALSE	canonical	3	1484	junction_1	387.955610290089	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTTTTTTTTTTAATGT	NA	False	NA	43	True	ATTAAA	-19	NA	91493018	91499603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222
ENSMUSG00000034192.6_2	chr6	+	591	3	ISM	ENSMUSG00000034192.6	ENSMUST00000206947.2	618	4	996	0	996	0	3prime_fragment	FALSE	canonical	3	1827	junction_2	298	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACTTTTTTTTTTAATG	NA	False	NA	42	True	ATTAAA	-18	NA	91494025	91499602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_91494141_91496530_91496627_91499222
ENSMUSG00000034194.19_1	chr14	-	1972	7	FSM	ENSMUSG00000034194.19	ENSMUST00000121142.4	1958	7	-12	-2	-12	1	multi-exon	FALSE	canonical	3	174	junction_3	17.7333646616265	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGATTGCGTCCAAGTGC	NA	False	NA	-5	True	AATAAA	-16	NA	69944954	69934754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502
ENSMUSG00000034194.19_5	chr14	-	2666	7	NIC	ENSMUSG00000034194.19	novel	1726	8	NA	NA	12	2	intron_retention	FALSE	canonical	3	88	junction_6	45.1651291251214	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATTGCGTCCAAGTGCG	NA	False	NA	-4	True	AATAAA	-17	NA	69944990	69934753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502_69944631_69944954
ENSMUSG00000034194.19_6	chr14	-	1682	8	FSM	ENSMUSG00000034194.19	ENSMUST00000118374.8	1726	8	46	-2	15	2	multi-exon	FALSE	canonical	3	88	junction_7	41.9007573844168	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATTGCGTCCAAGTGCG	NA	False	NA	-4	True	AATAAA	-17	NA	69944987	69934753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502_69944631_69944954
ENSMUSG00000034194.19_8	chr14	-	1080	5	ISM	ENSMUSG00000034194.19	ENSMUST00000121142.4	1958	7	1917	-2	-263	1	3prime_fragment	FALSE	canonical	3	174	junction_3	13.5531361684298	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGATTGCGTCCAAGTGC	NA	False	NA	-5	True	AATAAA	-16	NA	69943025	69934754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582
ENSMUSG00000034201.14_10	chr11	-	2900	5	NIC	ENSMUSG00000034201.14	novel	2530	6	NA	NA	-12	-2	intron_retention	FALSE	canonical	3	85	junction_4	39.0600499231632	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTACAGTTTTTGCATTT	NA	False	NA	-11	True	AAGAAA	-14	NA	5015312	5010382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_5012327_5012414_5012512_5012593_5012702_5013825_5014479_5015214
ENSMUSG00000034201.14_11	chr11	-	2819	7	FSM	ENSMUSG00000034201.14	ENSMUST00000056649.13	2847	7	15	13	-12	-4	multi-exon	FALSE	canonical	3	21	junction_5	62.4357447478784	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTACAGTTTTTGCAT	NA	False	NA	-13	True	AAGAAA	-12	NA	5015312	5010384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825_5014479_5014836_5015095_5015214
ENSMUSG00000034201.14_13	chr11	-	1120	1	ISM	ENSMUSG00000034201.14	ENSMUST00000056649.13	2847	7	3820	16	3344	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCATTTACAGTTTTTG	NA	False	NA	-16	True	AAGAAA	-9	NA	5011507	5010387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5010400_5011500
ENSMUSG00000034201.14_15	chr11	-	3162	5	ISM	ENSMUSG00000034201.14	ENSMUST00000109895.2	2530	6	-9	113	-8	-24	intron_retention	FALSE	canonical	3	136	junction_3	19.9546360528074	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGGACTGAGCCTTCAT	NA	False	NA	-7	True	AGTAAA	-22	NA	5015286	5010493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825
ENSMUSG00000034201.14_3	chr11	-	2562	6	FSM	ENSMUSG00000034201.14	ENSMUST00000109895.2	2530	6	-35	3	-12	-3	multi-exon	FALSE	canonical	3	85	junction_5	36.2049720342386	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTACAGTTTTTGCATT	NA	False	NA	-12	True	AAGAAA	-13	NA	5015312	5010383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825_5014479_5015214
ENSMUSG00000034201.14_6	chr11	-	3173	6	NIC	ENSMUSG00000034201.14	novel	2847	7	NA	NA	-12	-8	intron_retention	FALSE	canonical	3	54	junction_5	47.3894503027836	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGCATTTACAGTTTTT	NA	False	NA	-17	True	AAGAAA	-8	NA	5015312	5010388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825_5015095_5015214
ENSMUSG00000034201.14_7	chr11	-	3521	5	NIC	ENSMUSG00000034201.14	novel	2847	7	NA	NA	-12	3	intron_retention	FALSE	canonical	3	54	junction_4	51.0759238780857	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTTTGCATTTGTTTT	NA	False	NA	-6	True	AAGAAA	-19	NA	5015312	5010377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_5012327_5012414_5012512_5012593_5012702_5013825_5015095_5015214
ENSMUSG00000034203.9_0	chr6	-	1264	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	101	2107	4	-2107	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTGAATGGCTTTTTT	NA	False	NA	-4	True	ATTAAA	-18	NA	91450427	91441260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_91442296_91444664_91444764_91450297
ENSMUSG00000034203.9_3	chr6	-	826	1	ISM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	8439	2110	8342	-2110	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGATTTTGAATGGCTTT	NA	False	NA	-7	True	ATTAAA	-15	NA	91442089	91441263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_91441300_91442100
ENSMUSG00000034205.17_0	chr14	+	3080	14	FSM	ENSMUSG00000034205.17	ENSMUST00000022660.14	5316	14	99	2137	99	-1	multi-exon	FALSE	canonical	0	0	junction_1	1.66410058867569	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTTTGTTTGGTTTTTTG	6136	False	NA	NA	False	NA	NA	NA	69846615	69931146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_69846744_69871332_69871740_69882144_69882321_69898087_69898300_69901348_69901572_69904715_69904900_69910830_69910983_69913124_69913293_69915261_69915425_69919543_69919788_69926476_69926593_69927582_69927720_69929762_69929875_69930488
ENSMUSG00000034206.16_0	chr16	+	999	4	ISM	ENSMUSG00000034206.16	ENSMUST00000071452.12	7290	25	-22	77402	-22	0	5prime_fragment	FALSE	canonical	3	20	junction_3	9.03081145609604	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTATTTATTTGTTT	3726	False	NA	NA	False	ATTAAA	-16	NA	36832125	36837952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_36832422_36833468_36833649_36835440_36835572_36837560
ENSMUSG00000034206.16_1	chr16	+	8666	31	FSM	ENSMUSG00000034206.16	ENSMUST00000182946.8	8628	31	-19	-19	-19	-1	multi-exon	FALSE	canonical	2	7	junction_10	7.47655595103045	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAATGTTTTTAATTTT	3729	False	NA	1	True	AATAAA	-14	NA	36832128	36915778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_36832422_36833468_36833649_36835440_36835572_36836674_36836771_36837560_36837718_36843095_36843205_36848131_36848352_36849704_36849853_36853753_36853901_36855158_36855372_36860844_36860982_36862083_36862289_36862475_36862619_36865099_36865294_36866111_36866237_36868900_36869145_36880350_36883332_36885618_36885763_36887126_36887324_36891934_36892176_36894268_36894463_36897379_36897518_36898649_36898825_36902389_36902514_36903077_36903200_36906869_36907055_36909631_36909744_36911392_36911518_36913183_36913338_36914375_36914492_36914862
ENSMUSG00000034206.16_11	chr16	+	6932	21	ISM	ENSMUSG00000034206.16	ENSMUST00000054034.7	8552	30	28737	1	87	-1	3prime_fragment	FALSE	canonical	3	12	junction_5	6.09590026165127	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAATGTTTTTAATTTT	NA	False	NA	1	True	AATAAA	-14	NA	36860884	36915778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_36860982_36862083_36862289_36862475_36862619_36865099_36865294_36866111_36866237_36868900_36869145_36880350_36883332_36885618_36885763_36887126_36887324_36891934_36892176_36894268_36894463_36897379_36897518_36898649_36898825_36902389_36902514_36903077_36903200_36906869_36907055_36909631_36909744_36911392_36911518_36913183_36913338_36914375_36914492_36914862
ENSMUSG00000034206.16_13	chr16	+	6167	16	ISM	ENSMUSG00000034206.16	ENSMUST00000054034.7	8552	30	36754	1	8104	-1	3prime_fragment	FALSE	canonical	3	17	junction_1	4.17079795189788	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAATGTTTTTAATTTT	NA	False	NA	1	True	AATAAA	-14	NA	36868901	36915778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_36869145_36880350_36883332_36885618_36885763_36887126_36887324_36891934_36892176_36894268_36894463_36897379_36897518_36898649_36898825_36902389_36902514_36903077_36903200_36906869_36907055_36909631_36909744_36911392_36911518_36913183_36913338_36914375_36914492_36914862
ENSMUSG00000034206.16_14	chr16	+	4073	15	ISM	ENSMUSG00000034206.16	ENSMUST00000054034.7	8552	30	50051	4	21401	-4	3prime_fragment	FALSE	canonical	3	21	junction_1	3.53986048381825	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATATTAATGTTTTTAAT	2133	False	NA	-2	True	AATAAA	-11	NA	36882198	36915775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_36883332_36885618_36885763_36887126_36887324_36891934_36892176_36894268_36894463_36897379_36897518_36898649_36898825_36902389_36902514_36903077_36903200_36906869_36907055_36909631_36909744_36911392_36911518_36913183_36913338_36914375_36914492_36914862
ENSMUSG00000034206.16_17	chr16	+	4611	6	FSM	ENSMUSG00000034206.16	ENSMUST00000182717.2	2202	6	-2415	6	-2415	-6	multi-exon	FALSE	canonical	3	27	junction_2	2.75680975041804	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTATATTAATGTTTTTA	NA	False	NA	-4	True	AATAAA	-9	NA	36903861	36915773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_36907055_36909631_36909744_36911392_36911518_36913183_36913338_36914375_36914492_36914862
ENSMUSG00000034206.16_18	chr16	+	1469	5	ISM	ENSMUSG00000034206.16	ENSMUST00000182717.2	2202	6	3298	12	3298	8	3prime_fragment	FALSE	canonical	3	27	junction_1	3.08220700148449	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGGAATTTATATTAATG	NA	False	NA	-10	True	AATAAA	-3	NA	36909574	36915767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_36909744_36911392_36911518_36913183_36913338_36914375_36914492_36914862
ENSMUSG00000034206.16_21	chr16	+	2797	3	NIC	ENSMUSG00000034206.16	novel	1206	5	NA	NA	-20	8	intron_retention	FALSE	canonical	3	20	junction_2	11	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTGTTTATTTATCT	3728	False	NA	NA	False	ATTAAA	-24	NA	36832127	36837960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_36832422_36833468_36835572_36837560
ENSMUSG00000034206.16_24	chr16	+	3918	3	NIC	ENSMUSG00000034206.16	novel	1206	5	NA	NA	-17	-11	intron_retention	FALSE	canonical	3	18	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCACTTTATTTATTTA	3731	False	NA	NA	False	ATTAAA	-5	NA	36832130	36837941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_36835572_36836674_36836771_36837560
ENSMUSG00000034206.16_9	chr16	+	8550	30	FSM	ENSMUSG00000034206.16	ENSMUST00000054034.7	8552	30	0	2	0	-2	multi-exon	FALSE	canonical	2	7	junction_9	7.54534449468019	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTAATGTTTTTAATTT	3748	False	NA	0	True	AATAAA	-13	NA	36832147	36915777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_36832422_36833468_36833649_36835440_36835572_36837560_36837718_36843095_36843205_36848131_36848352_36849704_36849853_36853753_36853901_36855158_36855372_36860844_36860982_36862083_36862289_36862475_36862619_36865099_36865294_36866111_36866237_36868900_36869145_36880350_36883332_36885618_36885763_36887126_36887324_36891934_36892176_36894268_36894463_36897379_36897518_36898649_36898825_36902389_36902514_36903077_36903200_36906869_36907055_36909631_36909744_36911392_36911518_36913183_36913338_36914375_36914492_36914862
ENSMUSG00000034209.5_1	chr11	+	1203	3	FSM	ENSMUSG00000034209.5	ENSMUST00000037218.2	1110	3	-101	8	-101	-8	multi-exon	FALSE	canonical	3	9	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCACAATTTAAGGGTT	NA	False	NA	NA	False	AATAAA	-19	NA	5008026	5010377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_5008525_5009432_5009558_5009797
ENSMUSG00000034209.5_2	chr11	+	1434	2	ISM	ENSMUSG00000034209.5	ENSMUST00000037218.2	1110	3	-92	8	-92	-8	intron_retention	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCACAATTTAAGGGTT	NA	False	NA	NA	False	AATAAA	-19	NA	5008035	5010377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_5008525_5009432
ENSMUSG00000034210.15_0	chr4	+	5665	11	FSM	ENSMUSG00000034210.15	ENSMUST00000106525.9	2792	11	16	-2889	16	-3	multi-exon	FALSE	canonical	3	140	junction_6	11.0657128102983	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTCTGACTAGAAT	NA	False	NA	26	True	AATAAA	-15	NA	115594956	115634521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_115596038_115597588_115597738_115603654_115603801_115610117_115610217_115613629_115613741_115616005_115616093_115617066_115617259_115619414_115619496_115621768_115621881_115623589_115623710_115631034
ENSMUSG00000034210.15_1	chr4	+	4607	12	FSM	ENSMUSG00000034210.15	ENSMUST00000074425.13	4300	12	-310	3	-16	-3	multi-exon	FALSE	canonical	3	13	junction_11	41.468099857422	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTCTGACTAGAAT	NA	False	NA	26	True	AATAAA	-15	NA	115594959	115634521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_115596038_115597588_115597738_115603654_115603801_115610117_115610217_115613629_115613741_115616005_115616093_115617066_115617259_115619414_115619496_115621768_115621881_115623589_115623710_115631034_115631203_115632257
ENSMUSG00000034210.15_19	chr4	+	2518	1	NIC	ENSMUSG00000034210.15	novel	4300	12	NA	NA	8339	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTCTGACTAGAAT	NA	False	NA	26	True	AATAAA	-15	NA	115632003	115634521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_115632000_115634500
ENSMUSG00000034210.15_2	chr4	+	4644	12	NIC	ENSMUSG00000034210.15	novel	4300	12	NA	NA	-1	-3	combination_of_known_junctions	FALSE	canonical	3	7	junction_11	43.1384471189531	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTCTGACTAGAAT	NA	False	NA	26	True	AATAAA	-15	NA	115594939	115634521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_115596038_115597588_115597738_115603654_115603801_115610117_115610217_115613629_115613741_115616005_115616093_115617066_115617259_115619414_115619496_115621768_115621881_115623589_115623710_115631034_115631220_115632257
ENSMUSG00000034211.15_0	chr5	+	805	4	FSM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	26	1	-5	-1	multi-exon	FALSE	canonical	3	460	junction_1	196.309845793724	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTTGGCAGCTTGATTT	786	False	NA	22	True	CATAAA	-11	NA	129792592	129795543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979
ENSMUSG00000034211.15_1	chr5	+	950	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119576.8	5061	4	29	4082	8	-6	multi-exon	FALSE	canonical	3	150	junction_2	308.575220435256	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTAGTTTTGGCAGCTT	783	False	NA	17	True	CATAAA	-6	NA	129792589	129795538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129792614_129792747_129792975_129793790_129793931_129794979
ENSMUSG00000034211.15_16	chr5	+	1744	2	ISM	ENSMUSG00000034211.15	ENSMUST00000121339.2	2182	3	171	401	-15	-6	3prime_fragment	FALSE	canonical	3	902	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTAGTTTTGGCAGCTT	939	False	NA	17	True	CATAAA	-6	NA	129792745	129795538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_129793931_129794979
ENSMUSG00000034211.15_19	chr5	+	781	3	FSM	ENSMUSG00000034211.15	ENSMUST00000119985.2	859	3	105	-27	-15	-6	multi-exon	FALSE	canonical	3	517	junction_1	192.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTAGTTTTGGCAGCTT	939	False	NA	17	True	CATAAA	-6	NA	129792745	129795538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129792828_129793790_129793931_129794979
ENSMUSG00000034211.15_2	chr5	+	1770	3	FSM	ENSMUSG00000034211.15	ENSMUST00000121339.2	2182	3	17	395	-6	0	multi-exon	FALSE	canonical	3	460	junction_1	221	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGCAGCTTGATTTT	785	False	NA	23	True	CATAAA	-12	NA	129792591	129795544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129792614_129792747_129793931_129794979
ENSMUSG00000034211.15_20	chr5	+	928	3	FSM	ENSMUSG00000034211.15	ENSMUST00000121813.8	868	3	124	-184	-15	-6	multi-exon	FALSE	canonical	3	150	junction_1	376	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTAGTTTTGGCAGCTT	939	False	NA	17	True	CATAAA	-6	NA	129792745	129795538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129792975_129793790_129793931_129794979
ENSMUSG00000034211.15_5	chr5	+	720	3	NIC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	-5	-6	combination_of_known_splicesites	FALSE	canonical	3	55	junction_1	423.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTAGTTTTGGCAGCTT	786	False	NA	17	True	CATAAA	-6	NA	129792592	129795538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_129792614_129793790_129793931_129794979
ENSMUSG00000034211.15_8	chr5	+	936	4	NIC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	3	44	junction_2	350.330637477734	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTTGGCAGCTTGATTT	786	False	NA	22	True	CATAAA	-11	NA	129792592	129795543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_129792614_129792747_129792959_129793790_129793931_129794979
ENSMUSG00000034212.15_0	chr1	-	4181	14	NIC	ENSMUSG00000034212.15	novel	1809	3	NA	NA	13873	-24	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	3.0537589601968	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92816755	92787548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_92789125_92798530_92798692_92799394_92799471_92804256_92804423_92804732_92804847_92806052_92806185_92807036_92807145_92808701_92808843_92809472_92809614_92811463_92811636_92812556_92812988_92813857_92814017_92814344_92814562_92816168
ENSMUSG00000034212.15_6	chr1	-	1786	4	ISM	ENSMUSG00000034212.15	ENSMUST00000160548.8	3246	18	13947	14240	13947	-14240	internal_fragment	FALSE	canonical	1	2	junction_2	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTTTGTCATAGT	NA	False	NA	NA	False	NA	NA	NA	92816681	92812090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_92812988_92813857_92814017_92814344_92814562_92816168
ENSMUSG00000034216.13_0	chr2	+	3895	5	FSM	ENSMUSG00000034216.13	ENSMUST00000037280.5	4054	5	14	145	14	-18	multi-exon	FALSE	canonical	3	64	junction_3	7.17635004720366	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAATTAAATTAAATTA	6391	False	NA	NA	False	NA	NA	NA	119119236	119128789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119119612_119120633_119120776_119123178_119123271_119123399_119125271_119127374
ENSMUSG00000034216.13_3	chr2	+	2406	2	ISM	ENSMUSG00000034216.13	ENSMUST00000139367.8	3194	4	16	3304	14	-3304	5prime_fragment	FALSE	canonical	3	66	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAATGGCTCAAAAAAAAA	6391	False	NA	NA	False	NA	NA	NA	119119236	119122664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119119612_119120633
ENSMUSG00000034216.13_5	chr2	+	2515	2	ISM	ENSMUSG00000034216.13	ENSMUST00000151500.2	3914	5	4897	24	4897	-24	3prime_fragment	FALSE	canonical	3	81	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGCTAGAAAAAATTAAATT	NA	False	NA	NA	False	NA	NA	NA	119124164	119128783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119125271_119127374
ENSMUSG00000034218.17_1	chr9	-	6035	25	ISM	ENSMUSG00000034218.17	ENSMUST00000118282.9	9819	62	62459	-2026	-17890	2026	3prime_fragment	TRUE	canonical	0	0	junction_13	13.1718739702781	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAACCGTATGTCCATTTT	NA	False	NA	-3	True	AATAAA	-26	NA	53382807	53348422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706_53353822_53355291_53355379_53356644_53356811_53359352_53359503_53361817_53361935_53362848_53362990_53364652_53364736_53364831_53364971_53365588_53365748_53366015_53366130_53367067_53367276_53367793_53368009_53368677_53368792_53370102_53370277_53371012_53371248_53372190_53372311_53373780_53373886_53375452_53375602_53376331_53376435_53376525_53376615_53379264_53379353_53382651
ENSMUSG00000034218.17_11	chr9	-	11970	63	NIC	ENSMUSG00000034218.17	novel	9787	64	NA	NA	-26	2014	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	18.3797169683776	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCTGACTATACAACCG	NA	False	NA	-15	True	AATAAA	-14	NA	53447999	53348434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706_53353822_53355291_53355379_53356644_53356811_53359352_53359503_53361817_53361935_53362848_53362990_53364652_53364736_53364831_53364971_53365588_53365748_53366015_53366130_53367067_53367276_53367793_53368009_53368677_53368792_53370102_53370277_53371012_53371248_53372190_53372311_53373780_53373886_53375452_53375602_53376331_53376435_53376525_53376615_53379264_53379353_53382651_53382808_53384915_53385004_53390880_53391059_53391873_53392051_53393601_53393744_53395372_53395545_53397308_53397405_53398113_53398247_53399205_53399371_53399849_53400022_53401410_53401611_53402213_53402341_53403540_53403669_53404337_53404585_53405911_53406082_53407151_53407326_53408432_53408554_53410156_53410288_53410421_53410498_53411971_53412128_53412219_53412303_53414244_53414445_53415245_53415427_53417842_53417933_53419077_53419204_53421462_53421589_53423003_53423230_53424404_53424501_53426457_53426653_53427504_53427877_53429802_53429970_53431291_53431456_53433347_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ENSMUSG00000034218.17_14	chr9	-	5541	21	ISM	ENSMUSG00000034218.17	ENSMUST00000118282.9	9819	62	69714	-2017	-10635	2017	3prime_fragment	FALSE	canonical	0	0	junction_13	14.0259580777928	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGACTATACAACCGTAT	NA	False	NA	-12	True	AATAAA	-17	NA	53375552	53348431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706_53353822_53355291_53355379_53356644_53356811_53359352_53359503_53361817_53361935_53362848_53362990_53364652_53364736_53364831_53364971_53365588_53365748_53366015_53366130_53367067_53367276_53367793_53368009_53368677_53368792_53370102_53370277_53371012_53371248_53372190_53372311_53373780_53373886_53375452
ENSMUSG00000034218.17_17	chr9	-	3747	9	ISM	ENSMUSG00000034218.17	ENSMUST00000118282.9	9819	62	82304	-2016	1955	2016	3prime_fragment	FALSE	canonical	3	40	junction_6	9.26603340162337	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCTGACTATACAACCGTA	NA	False	NA	-13	True	AATAAA	-16	NA	53362962	53348432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706_53353822_53355291_53355379_53356644_53356811_53359352_53359503_53361817_53361935_53362848
ENSMUSG00000034218.17_20	chr9	-	3470	7	ISM	ENSMUSG00000034218.17	ENSMUST00000118282.9	9819	62	85816	-2022	5467	2022	3prime_fragment	FALSE	canonical	3	40	junction_6	10.4562580942387	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATACAACCGTATGTCCA	NA	False	NA	-7	True	AATAAA	-22	NA	53359450	53348426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706_53353822_53355291_53355379_53356644_53356811_53359352
ENSMUSG00000034218.17_23	chr9	-	3047	4	ISM	ENSMUSG00000034218.17	ENSMUST00000118282.9	9819	62	91509	-2014	103	2014	3prime_fragment	FALSE	canonical	3	52	junction_2	7.48331477354788	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCTGACTATACAACCG	NA	False	NA	-15	True	AATAAA	-14	NA	53353757	53348434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706
ENSMUSG00000034218.17_25	chr9	-	7095	33	ISM	ENSMUSG00000034218.17	ENSMUST00000118282.9	9819	62	45971	-2010	-34378	2010	3prime_fragment	FALSE	canonical	0	0	junction_13	12.5837429224178	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTATATGCTGACTATACA	5241	False	NA	-19	True	AATAAA	-10	NA	53399295	53348438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706_53353822_53355291_53355379_53356644_53356811_53359352_53359503_53361817_53361935_53362848_53362990_53364652_53364736_53364831_53364971_53365588_53365748_53366015_53366130_53367067_53367276_53367793_53368009_53368677_53368792_53370102_53370277_53371012_53371248_53372190_53372311_53373780_53373886_53375452_53375602_53376331_53376435_53376525_53376615_53379264_53379353_53382651_53382808_53384915_53385004_53390880_53391059_53391873_53392051_53393601_53393744_53395372_53395545_53397308_53397405_53398113_53398247_53399205
ENSMUSG00000034218.17_27	chr9	-	3987	10	ISM	ENSMUSG00000034218.17	ENSMUST00000118282.9	9819	62	80399	-2014	50	2014	intron_retention	FALSE	canonical	3	37	junction_9	10.0603119505913	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCTGACTATACAACCG	NA	False	NA	-15	True	AATAAA	-14	NA	53364867	53348434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706_53353822_53355291_53355379_53356644_53356811_53359352_53359503_53361817_53361935_53362848_53362990_53364652
ENSMUSG00000034218.17_35	chr9	-	2505	14	ISM	ENSMUSG00000034218.17	ENSMUST00000232179.2	9787	64	40	70705	-27	11774	5prime_fragment	FALSE	canonical	3	19	junction_1	29.3493545991154	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGTCCCTAATCTGAAA	NA	False	NA	NA	False	AATAAA	-15	NA	53448000	53421372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53421589_53423003_53423230_53424404_53424501_53426457_53426653_53427504_53427877_53429802_53429970_53431291_53431456_53433347_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ENSMUSG00000034218.17_41	chr9	-	1109	7	FSM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	-11	145	-11	-145	multi-exon	FALSE	canonical	3	42	junction_1	25.1837690233655	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGGCATCAGTGTTCTG	NA	False	NA	NA	False	ATTAAA	-15	NA	53447984	53433291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ENSMUSG00000034218.17_42	chr9	-	702	5	ISM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	9	5252	9	95	5prime_fragment	FALSE	canonical	3	85	junction_4	8.07774721070176	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGACGACTCAGAGTTTAA	NA	False	NA	-4	True	AATAAA	-16	NA	53447964	53438398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ENSMUSG00000034218.17_7	chr9	-	5435	20	ISM	ENSMUSG00000034218.17	ENSMUST00000118282.9	9819	62	71395	-2025	-8954	2025	3prime_fragment	FALSE	canonical	0	0	junction_13	14.1489895687704	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAACCGTATGTCCATTT	NA	False	NA	-4	True	AATAAA	-25	NA	53373871	53348423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706_53353822_53355291_53355379_53356644_53356811_53359352_53359503_53361817_53361935_53362848_53362990_53364652_53364736_53364831_53364971_53365588_53365748_53366015_53366130_53367067_53367276_53367793_53368009_53368677_53368792_53370102_53370277_53371012_53371248_53372190_53372311_53373780
ENSMUSG00000034220.8_0	chr1	+	3585	9	FSM	ENSMUSG00000034220.8	ENSMUST00000045970.8	4176	9	7	584	7	-584	multi-exon	FALSE	canonical	3	25	junction_8	9.32654142756038	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGACATGACCTCATTTA	7190	False	NA	4	True	ATTAAA	-15	NA	92759373	92787917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_92759820_92781068_92781228_92782579_92782969_92783628_92783795_92784708_92784840_92784969_92785090_92785193_92785328_92785576_92785753_92786053
ENSMUSG00000034220.8_4	chr1	+	3074	8	ISM	ENSMUSG00000034220.8	ENSMUST00000045970.8	4176	9	21767	584	214	-584	3prime_fragment	FALSE	canonical	3	25	junction_7	9.81252843489966	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGACATGACCTCATTTA	6841	False	NA	4	True	ATTAAA	-15	NA	92781133	92787917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_92781228_92782579_92782969_92783628_92783795_92784708_92784840_92784969_92785090_92785193_92785328_92785576_92785753_92786053
ENSMUSG00000034220.8_5	chr1	+	2911	7	ISM	ENSMUSG00000034220.8	ENSMUST00000045970.8	4176	9	23280	586	-1637	-586	3prime_fragment	FALSE	canonical	3	25	junction_6	10.5619863451699	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGGACATGACCTCATT	8354	False	NA	2	True	ATTAAA	-13	NA	92782646	92787915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_92782969_92783628_92783795_92784708_92784840_92784969_92785090_92785193_92785328_92785576_92785753_92786053
ENSMUSG00000034220.8_7	chr1	+	1003	1	ISM	ENSMUSG00000034220.8	ENSMUST00000045970.8	4176	9	27551	581	2428	-581	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACATGACCTCATTTAAAC	NA	False	NA	7	True	ATTAAA	-18	NA	92786917	92787920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_92786900_92787900
ENSMUSG00000034226.8_0	chr2	-	1726	4	NNC	ENSMUSG00000034226.8	novel	1703	3	NA	NA	-6715	-2	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_3	7.54247233265651	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGCTGTCTGTGGTCTC	4290	False	NA	-7	True	AATAAA	-15	NA	119108468	119099683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_119100969_119101162_119101222_119101396_119101722_119108411
ENSMUSG00000034226.8_1	chr2	-	1652	3	FSM	ENSMUSG00000034226.8	ENSMUST00000037360.8	1703	3	47	4	47	-4	multi-exon	FALSE	canonical	3	45	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGCTGCTGTCTGTGGTC	NA	False	NA	-9	True	AATAAA	-13	NA	119101706	119099685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119100969_119101162_119101222_119101396
ENSMUSG00000034226.8_7	chr2	-	911	1	ISM	ENSMUSG00000034226.8	ENSMUST00000037360.8	1703	3	1157	4	1157	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGCTGCTGTCTGTGGTC	NA	False	NA	-9	True	AATAAA	-13	NA	119100596	119099685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119099700_119100600
ENSMUSG00000034235.18_11	chr14	-	1161	1	ISM	ENSMUSG00000034235.18	ENSMUST00000035340.14	6495	21	68279	3	35985	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTCTTGTCTTTTACTT	7742	False	NA	-1	True	AATAAA	-20	NA	20600143	20598982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20599000_20600100
ENSMUSG00000034235.18_13	chr14	-	4266	10	ISM	ENSMUSG00000034235.18	ENSMUST00000035340.14	6495	21	41250	6	8956	-6	3prime_fragment	TRUE	canonical	3	56	junction_4	10.6121290960211	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAATCTCTTGTCTTTTA	4561	False	NA	-4	True	AATAAA	-17	NA	20627172	20598985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20600529_20602141_20602329_20606314_20606434_20610913_20612311_20614935_20615132_20616010_20616131_20620315_20620484_20623835_20623970_20626540_20626773_20627002
ENSMUSG00000034235.18_2	chr14	-	6455	21	FSM	ENSMUSG00000034235.18	ENSMUST00000022356.12	6580	21	119	6	119	-6	multi-exon	FALSE	canonical	3	44	junction_20	12.721929885045	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAATCTCTTGTCTTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	20691012	20598985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20600529_20602141_20602329_20606314_20606434_20610913_20612311_20614935_20615132_20616010_20616131_20620315_20620484_20623835_20623970_20626540_20626773_20627002_20627381_20627522_20627655_20633389_20633559_20636067_20636218_20638142_20638290_20638400_20638507_20639251_20639335_20639441_20639556_20641546_20641682_20654119_20654213_20657149_20657974_20690984
ENSMUSG00000034235.18_23	chr14	-	6622	22	NIC	ENSMUSG00000034235.18	novel	6580	21	NA	NA	123	-6	combination_of_known_junctions	FALSE	canonical	2	10	junction_12	21.0907766968883	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAATCTCTTGTCTTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	20691008	20598985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_20600529_20602141_20602329_20606314_20606434_20610913_20612311_20614935_20615132_20616010_20616131_20620315_20620484_20623835_20623970_20626540_20626773_20627002_20627381_20627522_20627655_20631524_20631696_20633389_20633559_20636067_20636218_20638142_20638290_20638400_20638507_20639251_20639335_20639441_20639556_20641546_20641682_20654119_20654213_20657149_20657974_20690984
ENSMUSG00000034235.18_27	chr14	-	3550	6	ISM	ENSMUSG00000034235.18	ENSMUST00000035340.14	6495	21	52304	6	20010	-6	3prime_fragment	FALSE	canonical	3	56	junction_4	11.0923396990896	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAATCTCTTGTCTTTTA	2234	False	NA	-4	True	AATAAA	-17	NA	20616118	20598985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20600529_20602141_20602329_20606314_20606434_20610913_20612311_20614935_20615132_20616010
ENSMUSG00000034235.18_3	chr14	-	6428	20	ISM	ENSMUSG00000034235.18	ENSMUST00000035340.14	6495	21	10448	6	-2576	-6	3prime_fragment	FALSE	canonical	3	56	junction_4	11.3942202386844	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAATCTCTTGTCTTTTA	6611	False	NA	-4	True	AATAAA	-17	NA	20657974	20598985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20600529_20602141_20602329_20606314_20606434_20610913_20612311_20614935_20615132_20616010_20616131_20620315_20620484_20623835_20623970_20626540_20626773_20627002_20627381_20627522_20627655_20633389_20633559_20636067_20636218_20638142_20638290_20638400_20638507_20639251_20639335_20639441_20639556_20641546_20641682_20654119_20654213_20657149
ENSMUSG00000034235.18_7	chr14	-	2489	4	ISM	ENSMUSG00000034235.18	ENSMUST00000035340.14	6495	21	56869	6	24575	-6	3prime_fragment	FALSE	canonical	3	82	junction_2	2.05480466765633	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAATCTCTTGTCTTTTA	6799	False	NA	-4	True	AATAAA	-17	NA	20611553	20598985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20600529_20602141_20602329_20606314_20606434_20610913
ENSMUSG00000034243.18_16	chr16	+	5746	10	ISM	ENSMUSG00000034243.18	ENSMUST00000039855.9	10847	21	29226	9	-9097	-9	3prime_fragment	FALSE	canonical	3	70	junction_5	8.64098759787715	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGGAATTGTGTGAGAC	NA	False	NA	NA	False	AATAAA	-12	NA	36735721	36753438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_36737363_36738270_36740159_36744994_36745174_36746097_36746261_36746450_36746589_36748616_36748761_36748997_36749096_36749617_36749753_36751920_36752027_36752184
ENSMUSG00000034243.18_19	chr16	+	3198	9	ISM	ENSMUSG00000034243.18	ENSMUST00000039855.9	10847	21	32682	9	-5641	-9	3prime_fragment	FALSE	canonical	3	70	junction_4	9.13441295322255	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGGAATTGTGTGAGAC	NA	False	NA	NA	False	AATAAA	-12	NA	36739177	36753438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_36740159_36744994_36745174_36746097_36746261_36746450_36746589_36748616_36748761_36748997_36749096_36749617_36749753_36751920_36752027_36752184
ENSMUSG00000034243.18_2	chr16	+	11119	23	NNC	ENSMUSG00000034243.18	novel	11001	22	NA	NA	-9	-11	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	26.4968421633239	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATAAGGAATTGTGTGAG	1468	False	NA	NA	False	AATAAA	-10	NA	36695520	36753436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_36695626_36705372_36705551_36706495_36706591_36707600_36707766_36707918_36708069_36709733_36709857_36711728_36711855_36713677_36713801_36715192_36715307_36718866_36719270_36720819_36720936_36724914_36725030_36728183_36728258_36732233_36737363_36738270_36740159_36744994_36745174_36746097_36746261_36746450_36746589_36748616_36748761_36748997_36749096_36749617_36749753_36751920_36752027_36752184
ENSMUSG00000034243.18_3	chr16	+	11043	22	NIC	ENSMUSG00000034243.18	novel	11001	22	NA	NA	1	-9	combination_of_known_junctions	TRUE	canonical	2	3	junction_2	27.5999934273218	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGGAATTGTGTGAGAC	1451	False	NA	NA	False	AATAAA	-12	NA	36695503	36753438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_36695626_36705372_36705551_36707600_36707766_36707918_36708069_36709733_36709857_36711728_36711855_36713677_36713801_36715192_36715307_36718866_36719270_36720819_36720936_36724914_36725030_36728183_36728258_36732233_36737363_36738270_36740159_36744994_36745174_36746097_36746261_36746450_36746589_36748616_36748761_36748997_36749096_36749617_36749753_36751920_36752027_36752184
ENSMUSG00000034243.18_4	chr16	+	11133	23	NIC	ENSMUSG00000034243.18	novel	11001	22	NA	NA	7	-11	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	25.9906610691209	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATAAGGAATTGTGTGAG	1457	False	NA	NA	False	AATAAA	-10	NA	36695509	36753436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_36695626_36705372_36705551_36706492_36706591_36707600_36707766_36707918_36708069_36709733_36709857_36711728_36711855_36713677_36713801_36715192_36715307_36718866_36719270_36720819_36720936_36724914_36725030_36728183_36728258_36732233_36737363_36738270_36740159_36744994_36745174_36746097_36746261_36746450_36746589_36748616_36748761_36748997_36749096_36749617_36749753_36751920_36752027_36752184
ENSMUSG00000034245.11_0	chr6	+	2512	10	FSM	ENSMUSG00000034245.11	ENSMUST00000041736.11	2653	10	131	10	-22	-10	multi-exon	FALSE	canonical	3	7	junction_9	4.60541817245838	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACACTTAACCAGGGCAGC	NA	False	NA	19	True	AATAAA	-21	NA	91133777	91151664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_91133830_91134378_91134528_91136142_91136244_91142542_91142660_91143224_91143268_91144785_91144863_91145790_91145854_91146376_91146474_91149146_91149326_91150030
ENSMUSG00000034245.11_2	chr6	+	2455	9	ISM	ENSMUSG00000034245.11	ENSMUST00000041736.11	2653	10	732	15	0	-15	3prime_fragment	FALSE	canonical	3	7	junction_8	4.63512405443479	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCCAGACACTTAACCAGG	NA	False	NA	14	True	AATAAA	-16	NA	91134378	91151659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_91134528_91136142_91136244_91142542_91142660_91143224_91143268_91144785_91144863_91145790_91145854_91146376_91146474_91149146_91149326_91150030
ENSMUSG00000034245.11_4	chr6	+	4524	7	ISM	ENSMUSG00000034245.11	ENSMUST00000041736.11	2653	10	6574	18	-2412	-18	3prime_fragment	FALSE	canonical	3	7	junction_6	3.76017139089283	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATCCAGACACTTAACC	NA	False	NA	11	True	AATAAA	-13	NA	91140220	91151656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_91142660_91143224_91143268_91144785_91144863_91145790_91145854_91146376_91146474_91149146_91149326_91150030
ENSMUSG00000034245.11_5	chr6	+	1812	2	FSM	ENSMUSG00000034245.11	ENSMUST00000134154.2	815	2	408	-1405	408	-4	multi-exon	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCAGGGCAGCTGCCCA	NA	False	NA	25	True	AATAAA	-27	NA	91149153	91151670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_91149326_91150030
ENSMUSG00000034245.11_6	chr6	+	695	1	ISM	ENSMUSG00000034245.11	ENSMUST00000041736.11	2653	10	17331	2	2232	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGCAGCTGCCCAAG	NA	False	NA	27	True	AATAAA	-29	NA	91150977	91151672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_91151000_91151700
ENSMUSG00000034247.10_0	chr11	-	4164	9	ISM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	17933	815	14	-815	3prime_fragment	FALSE	canonical	3	46	junction_6	15.8424863894529	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTTTCTGAATCTCA	NA	False	NA	-1	True	AGTAAA	-19	NA	103285580	103255915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103257820_103258423_103258582_103258933_103258998_103261687_103261882_103264765_103264912_103267418_103268340_103270859_103271179_103277783_103278175_103285513
ENSMUSG00000034247.10_10	chr11	-	965	1	ISM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	46633	815	28714	-815	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTTTCTGAATCTCA	8413	False	NA	-1	True	AGTAAA	-19	NA	103256880	103255915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103255900_103256900
ENSMUSG00000034247.10_11	chr11	-	3094	5	ISM	ENSMUSG00000034247.10	ENSMUST00000184350.2	2260	8	20055	-1527	20055	-815	3prime_fragment	TRUE	canonical	3	69	junction_4	8.77496438739212	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTTTCTGAATCTCA	1870	False	NA	-1	True	AGTAAA	-19	NA	103265539	103255915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103257820_103258423_103258582_103258933_103258998_103261687_103261882_103264765
ENSMUSG00000034247.10_2	chr11	-	5146	12	FSM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	3	819	3	-819	multi-exon	FALSE	canonical	3	46	junction_6	16.0020659823186	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGTCTTGTTTCTGAAT	NA	False	NA	-5	True	AGTAAA	-15	NA	103303510	103255919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_103257820_103258423_103258582_103258933_103258998_103261687_103261882_103264765_103264912_103267418_103268340_103270859_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650_103294737_103303418
ENSMUSG00000034247.10_24	chr11	-	3144	7	ISM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	0	11861	0	-9519	5prime_fragment	FALSE	canonical	3	46	junction_1	16.3647656737136	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCACTGTATTGGACAACA	NA	False	NA	NA	False	NA	NA	NA	103303513	103266961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103268340_103270859_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650_103294737_103303418
ENSMUSG00000034247.10_34	chr11	-	2709	6	ISM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	4	14812	4	-12470	5prime_fragment	FALSE	canonical	3	54	junction_5	14.3861044066836	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGTATTAGCTCAAAATG	NA	False	NA	NA	False	ATTAAA	-13	NA	103303509	103269912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650_103294737_103303418
ENSMUSG00000034247.10_4	chr11	-	2942	6	ISM	ENSMUSG00000034247.10	ENSMUST00000184350.2	2260	8	17700	-1527	17700	-815	3prime_fragment	FALSE	canonical	3	52	junction_5	14.3387586631479	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTTTCTGAATCTCA	NA	False	NA	-1	True	AGTAAA	-19	NA	103267894	103255915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103257820_103258423_103258582_103258933_103258998_103261687_103261882_103264765_103264912_103267418
ENSMUSG00000034247.10_8	chr11	-	5054	11	ISM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	8777	819	8777	-819	3prime_fragment	FALSE	canonical	3	46	junction_6	15.7419820861288	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGTCTTGTTTCTGAAT	NA	False	NA	-5	True	AGTAAA	-15	NA	103294736	103255919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103257820_103258423_103258582_103258933_103258998_103261687_103261882_103264765_103264912_103267418_103268340_103270859_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650
ENSMUSG00000034248.8_0	chr14	-	1514	1	ISM	ENSMUSG00000034248.8	ENSMUST00000037064.5	4174	4	41748	3	41603	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATTGTGGGGTCTTTG	6789	False	NA	-7	True	AATAAA	-13	NA	69480813	69479299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_69479300_69480800
ENSMUSG00000034248.8_1	chr14	-	4594	4	FSM	ENSMUSG00000034248.8	ENSMUST00000184914.2	2212	4	-57	-2325	-42	0	multi-exon	FALSE	canonical	3	36	junction_2	77.0512095225564	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATTGTGGGGTCTTTG	630	False	NA	-7	True	AATAAA	-13	NA	69522473	69479299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_69482804_69485029_69485087_69486331_69487072_69522180
ENSMUSG00000034248.8_2	chr14	-	3560	3	FSM	ENSMUSG00000034248.8	ENSMUST00000184497.2	5927	3	42	2325	42	0	multi-exon	FALSE	canonical	3	50	junction_2	78	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTGAATTTCTCTTTT	584	False	NA	-8	True	NA	NA	NA	69522519	69481624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_69482804_69485029_69487072_69522180
ENSMUSG00000034248.8_4	chr14	-	2395	2	ISM	ENSMUSG00000034248.8	ENSMUST00000184914.2	2212	4	36171	0	36171	0	3prime_fragment	FALSE	canonical	3	206	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTGAATTTCTCTTTT	1357	False	NA	-8	True	NA	NA	NA	69486245	69481624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_69482804_69485029
ENSMUSG00000034248.8_6	chr14	-	1804	4	FSM	ENSMUSG00000034248.8	ENSMUST00000037064.5	4174	4	42	2328	42	0	multi-exon	FALSE	canonical	3	26	junction_2	79.79974937304	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTGAATTTCTCTTTT	584	False	NA	-8	True	NA	NA	NA	69522519	69481624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_69482804_69485029_69485087_69486842_69487072_69522180
ENSMUSG00000034252.15_0	chr9	+	4261	23	FSM	ENSMUSG00000034252.15	ENSMUST00000037484.15	5111	23	62	788	-8	-3	multi-exon	FALSE	canonical	0	0	junction_3	105.987768279143	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAATGATTAATTTGATA	NA	False	NA	1	True	AATAAA	-12	NA	79974246	80051447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_79974855_79994711_79994806_79997130_79997189_79999548_79999695_80000818_80000924_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
ENSMUSG00000034252.15_1	chr9	+	4277	24	FSM	ENSMUSG00000034252.15	ENSMUST00000165607.9	3495	24	-521	-261	-1	-1	multi-exon	FALSE	canonical	0	0	junction_3	90.822246885334	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATGATTAATTTGATATT	NA	False	NA	3	True	AATAAA	-14	NA	79974253	80051449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_79974855_79994711_79994806_79997130_79997189_79999548_79999695_80000818_80000924_80006167_80006189_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
ENSMUSG00000034252.15_10	chr9	+	4249	23	FSM	ENSMUSG00000034252.15	ENSMUST00000175999.8	4706	23	-159	616	4	-3	multi-exon	FALSE	canonical	3	24	junction_2	83.8945126703669	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAATGATTAATTTGATA	NA	False	NA	1	True	AATAAA	-12	NA	79974221	80051447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_79974855_79994711_79994806_79999548_79999695_80000818_80000924_80006167_80006189_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
ENSMUSG00000034252.15_3	chr9	+	4125	22	NIC	ENSMUSG00000034252.15	novel	4706	23	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	64.7191035033447	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGATTAATTTGATAT	NA	False	NA	2	True	AATAAA	-13	NA	79974252	80051448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_79974855_79999548_79999695_80000818_80000924_80006167_80006189_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
ENSMUSG00000034252.15_4	chr9	+	4095	21	NIC	ENSMUSG00000034252.15	novel	5111	23	NA	NA	6	-3	combination_of_known_junctions	FALSE	canonical	3	75	junction_3	86.9113916584011	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAATGATTAATTTGATA	NA	False	NA	1	True	AATAAA	-12	NA	79974260	80051447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_79974855_79999548_79999695_80000818_80000924_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
ENSMUSG00000034254.18_2	chr17	+	2123	7	FSM	ENSMUSG00000034254.18	ENSMUST00000037489.15	2190	7	33	34	33	-3	multi-exon	FALSE	canonical	3	118	junction_1	5.07991688470939	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACGTGGGGTTCTCTGCGG	NA	False	NA	10	True	AATAAA	-10	NA	34824867	34832389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34825146_34829418_34829619_34829845_34829980_34830247_34830424_34830578_34830675_34830764_34830841_34831226
ENSMUSG00000034254.18_3	chr17	+	2055	7	FSM	ENSMUSG00000034254.18	ENSMUST00000173973.8	1105	7	30	-980	30	5	multi-exon	FALSE	canonical	1	5	junction_3	44.7688507781917	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCTCTGCGGCCTGTTGT	NA	False	NA	18	True	AATAAA	-18	NA	34824864	34832397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34825146_34829418_34829619_34829845_34829901_34830247_34830424_34830578_34830675_34830764_34830841_34831226
ENSMUSG00000034254.18_7	chr17	+	2394	6	NIC	ENSMUSG00000034254.18	novel	2190	7	NA	NA	32	-1	intron_retention	FALSE	canonical	3	118	junction_1	5.38887743412299	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGTGGGGTTCTCTGCGGCC	NA	False	NA	12	True	AATAAA	-12	NA	34824866	34832391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_34825146_34829418_34829619_34829845_34830424_34830578_34830675_34830764_34830841_34831226
ENSMUSG00000034255.18_0	chr11	-	3471	16	ISM	ENSMUSG00000034255.19	ENSMUST00000107024.9	4261	18	3011	1	3011	0	3prime_fragment	FALSE	canonical	2	3	junction_6	4.91075916285411	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGCGAATGTACTCTG	NA	False	NA	-1	True	NA	NA	NA	103251222	103222323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021_103230103_103230280_103230464_103230810_103231231_103251072
ENSMUSG00000034255.18_11	chr11	-	2976	15	ISM	ENSMUSG00000034255.19	ENSMUST00000041385.14	3512	16	4643	-2	-340	0	3prime_fragment	FALSE	canonical	2	3	junction_6	4.81706151431068	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGCGAATGTACTCTG	8986	False	NA	-1	True	NA	NA	NA	103230885	103222323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021_103230103_103230280_103230464_103230810
ENSMUSG00000034255.18_2	chr11	-	4254	18	FSM	ENSMUSG00000034255.19	ENSMUST00000107024.9	4261	18	6	1	6	0	multi-exon	FALSE	canonical	2	3	junction_6	4.84999910819383	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGCGAATGTACTCTG	8180	False	NA	-1	True	NA	NA	NA	103254227	103222323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021_103230103_103230280_103230464_103230810_103231231_103251072_103251745_103253032_103253161_103254094
ENSMUSG00000034255.18_3	chr11	-	2683	13	ISM	ENSMUSG00000034255.19	ENSMUST00000041385.14	3512	16	5461	-2	62	0	3prime_fragment	TRUE	canonical	2	3	junction_6	4.93006648591635	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGCGAATGTACTCTG	9804	False	NA	-1	True	NA	NA	NA	103230067	103222323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021
ENSMUSG00000034255.18_4	chr11	-	2126	5	ISM	ENSMUSG00000034255.19	ENSMUST00000041385.14	3512	16	10599	-2	7	0	intron_retention	FALSE	canonical	3	10	junction_3	4.49305018890286	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGCGAATGTACTCTG	NA	False	NA	-1	True	NA	NA	NA	103224929	103222323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665
ENSMUSG00000034255.18_5	chr11	-	3387	16	NIC	ENSMUSG00000034255.19	novel	3512	16	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_15	5.57215298505783	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGCGAATGTACTCTG	NA	False	NA	-1	True	NA	NA	NA	103247156	103222323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021_103230103_103230280_103230464_103230810_103231231_103247090
ENSMUSG00000034255.18_6	chr11	-	146	1	ISM	ENSMUSG00000034255.19	ENSMUST00000107024.9	4261	18	31764	1	1752	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGCGAATGTACTCTG	NA	False	NA	-1	True	NA	NA	NA	103222469	103222323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_103222300_103222500
ENSMUSG00000034255.18_7	chr11	-	1768	3	FSM	ENSMUSG00000034255.19	ENSMUST00000092557.6	1504	3	100	-364	43	364	multi-exon	FALSE	canonical	3	7	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGCAGTGAGGCGTGGAA	8217	False	NA	NA	False	AATAAA	-16	NA	103254190	103250200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_103251745_103253032_103253161_103254094
ENSMUSG00000034258.5_0	chr12	+	3401	10	FSM	ENSMUSG00000034258.5	ENSMUST00000040461.4	3435	10	28	6	28	-6	multi-exon	FALSE	canonical	3	40	junction_4	3.8522079607466	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGGTCTGCCTCATCAT	NA	False	NA	NA	False	AATAAA	-8	NA	85793340	85860353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85794364_85829730_85829873_85832861_85833003_85842948_85843017_85845271_85845376_85849908_85850020_85851141_85851248_85851369_85851482_85851969_85852026_85858815
ENSMUSG00000034259.9_0	chr15	+	809	3	FSM	ENSMUSG00000034259.9	ENSMUST00000059045.8	1796	3	69	918	1	664	multi-exon	FALSE	canonical	0	0	junction_1	330.5	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACACCTTACTGTACAGC	948	False	NA	12	True	AATAAA	-18	NA	76211665	76213959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76211864_76213229_76213437_76213555
ENSMUSG00000034259.9_1	chr15	+	807	3	FSM	ENSMUSG00000034259.9	ENSMUST00000230512.2	1728	3	10	911	10	667	multi-exon	FALSE	canonical	3	25	junction_1	318	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTTACTGTACAGCACT	957	False	NA	15	True	AATAAA	-21	NA	76211674	76213962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76211868_76213229_76213437_76213555
ENSMUSG00000034259.9_2	chr15	+	1815	2	ISM	ENSMUSG00000034259.9	ENSMUST00000059045.8	1796	3	71	29	3	-25	intron_retention	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGTATTAAAGGTCAGAATG	950	False	NA	-21	True	NA	NA	NA	76211667	76214848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76211864_76213229
ENSMUSG00000034259.9_3	chr15	+	2168	2	NIC	ENSMUSG00000034259.9	novel	1728	3	NA	NA	11	667	intron_retention	FALSE	canonical	3	661	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTTACTGTACAGCACT	958	False	NA	15	True	AATAAA	-21	NA	76211675	76213962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76213437_76213555
ENSMUSG00000034263.14_0	chr9	+	2481	13	FSM	ENSMUSG00000034263.14	ENSMUST00000170517.9	2820	13	6	333	6	-63	multi-exon	TRUE	canonical	3	115	junction_1	33.6860505254029	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAGAAACAAATGGTGTT	NA	False	NA	NA	False	ATTAAA	-25	NA	64868192	64893927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_64868221_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
ENSMUSG00000034263.14_13	chr9	+	2454	12	ISM	ENSMUSG00000034263.14	ENSMUST00000037504.7	2837	13	756	63	4	-63	3prime_fragment	FALSE	canonical	3	207	junction_5	14.7036848139314	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAGAAACAAATGGTGTT	NA	False	NA	NA	False	ATTAAA	-25	NA	64868974	64893927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
ENSMUSG00000034263.14_8	chr9	+	2778	13	FSM	ENSMUSG00000034263.14	ENSMUST00000037504.7	2837	13	-4	63	-4	-63	multi-exon	FALSE	canonical	3	19	junction_1	58.8451357377991	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAGAAACAAATGGTGTT	NA	False	NA	NA	False	ATTAAA	-25	NA	64868214	64893927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_64868540_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
ENSMUSG00000034265.9_0	chr17	+	2989	9	NNC	ENSMUSG00000034265.9	novel	3078	9	NA	NA	42	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	4.789311015167	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACAGTTGTCAACAGCTT	2757	False	NA	28	True	AATAAA	-29	NA	5542873	5804084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_5543967_5698177_5698339_5735929_5736089_5762662_5762801_5765243_5765293_5775501_5775605_5777099_5777210_5781746_5781850_5803011
ENSMUSG00000034265.9_1	chr17	+	3051	9	FSM	ENSMUSG00000034265.9	ENSMUST00000089185.6	3078	9	24	3	24	-3	multi-exon	FALSE	canonical	1	2	junction_8	5.68853012649138	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATACAGTTGTCAACAGCT	2739	False	NA	27	True	AATAAA	-28	NA	5542855	5804083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_5543967_5698177_5698339_5735929_5736089_5762662_5762801_5765243_5765293_5775501_5775605_5777099_5777210_5781746_5781850_5802966
ENSMUSG00000034266.7_0	chr12	+	970	3	FSM	ENSMUSG00000034266.7	ENSMUST00000040536.6	955	3	-24	9	-24	-9	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCAGCCCTGGAAAG	NA	False	NA	NA	False	AATAAA	-9	NA	85733418	85755852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85733748_85736041_85736147_85755316
ENSMUSG00000034269.13_20	chr6	+	5555	16	ISM	ENSMUSG00000034269.13	ENSMUST00000149584.8	5023	19	5135	-1587	4583	-2	3prime_fragment	FALSE	canonical	3	33	junction_14	19.922739659885	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATCATCATAATGTTAAC	5134	False	NA	10	True	NA	NA	NA	113091960	113130383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
ENSMUSG00000034269.13_3	chr6	+	2165	3	FSM	ENSMUSG00000034269.13	ENSMUST00000143998.8	2180	3	7	8	7	-8	multi-exon	FALSE	canonical	3	52	junction_2	21	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTAATACTTTTTTGTG	7850	False	NA	NA	False	AATAAA	-8	NA	113054332	113084514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113054674_113081895_113082083_113082877
ENSMUSG00000034269.13_31	chr6	+	3251	5	ISM	ENSMUSG00000034269.13	ENSMUST00000150107.2	3029	7	16167	-1566	15235	-2	3prime_fragment	FALSE	canonical	3	33	junction_3	25.9169346181218	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATCATCATAATGTTAAC	NA	False	NA	10	True	NA	NA	NA	113120876	113130383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
ENSMUSG00000034269.13_32	chr6	+	2640	2	ISM	ENSMUSG00000034269.13	ENSMUST00000150107.2	3029	7	22359	-1562	21427	-6	3prime_fragment	FALSE	canonical	3	38	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCATAATCATCATAATGT	2730	False	NA	6	True	NA	NA	NA	113127068	113130379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113127152_113127822
ENSMUSG00000034269.13_33	chr6	+	2983	4	ISM	ENSMUSG00000034269.13	ENSMUST00000150107.2	3029	7	19791	-1566	18859	-2	3prime_fragment	FALSE	canonical	3	33	junction_2	2.35702260395516	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATCATCATAATGTTAAC	162	False	NA	10	True	NA	NA	NA	113124500	113130383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113124700_113126515_113126650_113127062_113127152_113127822
ENSMUSG00000034269.13_34	chr6	+	2694	3	ISM	ENSMUSG00000034269.13	ENSMUST00000150107.2	3029	7	21892	-1562	20960	-6	3prime_fragment	FALSE	canonical	3	33	junction_1	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCATAATCATCATAATGT	2263	False	NA	6	True	NA	NA	NA	113126601	113130379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113126650_113127062_113127152_113127822
ENSMUSG00000034269.13_35	chr6	+	1603	1	ISM	ENSMUSG00000034269.13	ENSMUST00000042889.12	6755	22	74457	11	23141	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCATCATAATGTTAACAA	994	False	NA	12	True	NA	NA	NA	113128782	113130385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113128800_113130400
ENSMUSG00000034271.17_1	chr12	+	1768	4	FSM	ENSMUSG00000034271.17	ENSMUST00000177587.9	1645	4	-128	5	-128	-5	multi-exon	FALSE	canonical	3	23	junction_1	88.8606899715629	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGCTGCCTCGAGTGGT	6122	False	NA	29	True	AGTAAA	-15	NA	85645672	85686647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85646002_85654906_85655140_85678418_85678524_85685546
ENSMUSG00000034271.17_4	chr12	+	1654	4	FSM	ENSMUSG00000034271.17	ENSMUST00000050687.14	1643	4	-16	5	-16	-5	multi-exon	FALSE	canonical	3	151	junction_1	28.5228952870419	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGCTGCCTCGAGTGGT	6623	False	NA	29	True	AGTAAA	-15	NA	85646173	85686647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85646389_85654906_85655140_85678418_85678524_85685546
ENSMUSG00000034271.17_9	chr12	+	994	1	ISM	ENSMUSG00000034271.17	ENSMUST00000177587.9	1645	4	39851	7	36656	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCCAGCTGCCTCGAGTG	NA	False	NA	27	True	AGTAAA	-13	NA	85685651	85686645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_85685700_85686600
ENSMUSG00000034274.12_17	chr11	+	2192	19	ISM	ENSMUSG00000034274.12	ENSMUST00000038237.8	2235	20	4448	7	-2421	-7	3prime_fragment	FALSE	canonical	3	246	junction_9	24.6722341064296	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATGGACTCTGTTTGTA	1022	False	NA	14	True	ATTAAA	-11	NA	4849790	4878858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_4849907_4851151_4851296_4852085_4852200_4852334_4852433_4854094_4854242_4855640_4855756_4860626_4860760_4862780_4862859_4864269_4864311_4864521_4864622_4865488_4865598_4868123_4868226_4869732_4869830_4870376_4870492_4871921_4872026_4872138_4872227_4874747_4874864_4876045_4876237_4878674
ENSMUSG00000034274.12_2	chr11	+	2231	20	FSM	ENSMUSG00000034274.12	ENSMUST00000038237.8	2235	20	-3	7	-3	-7	multi-exon	TRUE	canonical	3	228	junction_1	27.0805712775824	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATGGACTCTGTTTGTA	NA	False	NA	14	True	ATTAAA	-11	NA	4845339	4878858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4845379_4849790_4849907_4851151_4851296_4852085_4852200_4852334_4852433_4854094_4854242_4855640_4855756_4860626_4860760_4862780_4862859_4864269_4864311_4864521_4864622_4865488_4865598_4868123_4868226_4869732_4869830_4870376_4870492_4871921_4872026_4872138_4872227_4874747_4874864_4876045_4876237_4878674
ENSMUSG00000034275.19_1	chr9	+	4034	1	ISM	ENSMUSG00000034275.19	ENSMUST00000214357.2	16144	20	54303	6	26567	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAGTTTGTTTCCTATG	NA	False	NA	4	True	AATAAA	-9	NA	27264802	27268836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_27264800_27268800
ENSMUSG00000034278.4_0	chr2	-	997	11	FSM	ENSMUSG00000034278.4	ENSMUST00000038439.4	1008	11	4	7	4	-7	multi-exon	FALSE	canonical	3	82	junction_10	69.3010822426317	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTCTACTTTTCTT	NA	False	NA	-11	True	AATAAA	-8	NA	119039272	119002987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011451_119014079_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
ENSMUSG00000034282.4_0	chr11	-	2055	1	ISM	ENSMUSG00000034282.4	ENSMUST00000037007.4	6384	22	15461	3	15461	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCGAGTCTCCTCTCAT	NA	False	NA	NA	False	AATAAA	-12	NA	116113442	116111387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116111400_116113400
ENSMUSG00000034282.4_1	chr11	-	6395	22	FSM	ENSMUSG00000034282.4	ENSMUST00000037007.4	6384	22	-14	3	-14	-3	multi-exon	FALSE	canonical	1	1	junction_4	2.11355628773068	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCGAGTCTCCTCTCAT	9950	False	NA	NA	False	AATAAA	-12	NA	116128917	116111387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116115028_116115893_116115987_116116087_116116199_116116309_116116394_116117814_116117966_116118383_116118578_116118667_116118807_116118884_116119064_116120226_116120400_116120570_116120669_116120794_116120950_116121241_116121389_116121743_116121870_116123219_116123316_116123455_116123564_116123650_116123813_116123929_116123969_116124211_116124338_116124980_116125108_116125194_116125350_116125757_116125858_116128725
ENSMUSG00000034282.4_3	chr11	-	5707	16	ISM	ENSMUSG00000034282.4	ENSMUST00000037007.4	6384	22	5040	3	5040	-3	3prime_fragment	FALSE	canonical	1	1	junction_4	2.18682926224756	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCGAGTCTCCTCTCAT	9031	False	NA	NA	False	AATAAA	-12	NA	116123863	116111387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116115028_116115893_116115987_116116087_116116199_116116309_116116394_116117814_116117966_116118383_116118578_116118667_116118807_116118884_116119064_116120226_116120400_116120570_116120669_116120794_116120950_116121241_116121389_116121743_116121870_116123219_116123316_116123455_116123564_116123650
ENSMUSG00000034285.16_0	chr11	+	1878	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	47	1	-1	-1	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	1109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTTGTGGTGTTGTCTTC	NA	False	NA	10	True	ATTAAA	-10	NA	4823997	4844199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUSG00000034290.10_0	chr12	-	1726	1	ISM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	38122	1	38122	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGGGCTGTGTTTGAGT	3127	False	NA	-4	True	AATAAA	-14	NA	85348014	85346288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85346300_85348000
ENSMUSG00000034290.10_10	chr12	-	2519	2	ISM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	35789	1	35789	-1	3prime_fragment	FALSE	canonical	3	92	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGGGCTGTGTTTGAGT	794	False	NA	-4	True	AATAAA	-14	NA	85350347	85346288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85348701_85350240
ENSMUSG00000034290.10_12	chr12	-	4583	17	ISM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	9418	1	9418	-1	3prime_fragment	FALSE	canonical	3	74	junction_16	13.8061354114756	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGGGCTGTGTTTGAGT	NA	False	NA	-4	True	AATAAA	-14	NA	85376718	85346288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85348701_85350240_85350448_85352236_85352399_85352910_85353141_85354703_85354764_85355592_85355764_85357160_85357323_85358111_85358221_85359719_85359876_85360955_85361003_85361175_85361377_85362353_85362499_85367487_85367681_85368802_85368854_85372081_85372147_85374162_85374274_85376617
ENSMUSG00000034290.10_14	chr12	-	3657	9	ISM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	26268	6	26268	-6	3prime_fragment	FALSE	canonical	3	86	junction_4	14.1415831857681	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCAGCGAGGGCTGTGTT	NA	False	NA	-9	True	AATAAA	-9	NA	85359868	85346293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85348701_85350240_85350448_85352236_85352399_85352910_85353141_85354703_85354764_85355592_85355764_85357160_85357323_85358111_85358221_85359719
ENSMUSG00000034290.10_2	chr12	-	5382	22	FSM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	2	2	2	-2	multi-exon	FALSE	canonical	3	74	junction_16	12.716336556552	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGAGGGCTGTGTTTGAG	7959	False	NA	-5	True	AATAAA	-13	NA	85386134	85346289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_85348701_85350240_85350448_85352236_85352399_85352910_85353141_85354703_85354764_85355592_85355764_85357160_85357323_85358111_85358221_85359719_85359876_85360955_85361003_85361175_85361377_85362353_85362499_85367487_85367681_85368802_85368854_85372081_85372147_85374162_85374274_85376617_85376750_85379274_85379381_85380759_85380831_85381371_85381428_85383081_85383260_85385776
ENSMUSG00000034290.10_20	chr12	-	3516	20	ISM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	-6	5205	-6	-5205	5prime_fragment	FALSE	canonical	3	74	junction_14	9.76170367946916	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGTGGTTGGAGGTTAT	7951	False	NA	NA	False	NA	NA	NA	85386142	85351492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85352399_85352910_85353141_85354703_85354764_85355592_85355764_85357160_85357323_85358111_85358221_85359719_85359876_85360955_85361003_85361175_85361377_85362353_85362499_85367487_85367681_85368802_85368854_85372081_85372147_85374162_85374274_85376617_85376750_85379274_85379381_85380759_85380831_85381371_85381428_85383081_85383260_85385776
ENSMUSG00000034290.10_6	chr12	-	3349	7	ISM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	28869	1	28869	-1	3prime_fragment	FALSE	canonical	3	86	junction_4	15.0738920727934	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGGGCTGTGTTTGAGT	NA	False	NA	-4	True	AATAAA	-14	NA	85357267	85346288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_85348701_85350240_85350448_85352236_85352399_85352910_85353141_85354703_85354764_85355592_85355764_85357160
ENSMUSG00000034292.14_0	chr1	+	3503	15	FSM	ENSMUSG00000034292.14	ENSMUST00000047242.9	3474	15	-33	4	14	-4	multi-exon	FALSE	canonical	2	37	junction_5	6.41943795619752	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTGTATGGACTGTCAA	8951	False	NA	4	True	ATTAAA	-20	NA	91422382	91457025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91422611_91425674_91425744_91427223_91427386_91428494_91428633_91428726_91429147_91433144_91433217_91435214_91435291_91446015_91446037_91447299_91447385_91447777_91447862_91448605_91448730_91448908_91448946_91450552_91450630_91453600_91453825_91455339
ENSMUSG00000034292.14_10	chr1	+	2628	11	ISM	ENSMUSG00000034292.14	ENSMUST00000047242.9	3474	15	6589	4	6589	-4	3prime_fragment	FALSE	canonical	2	37	junction_1	6.75943784644848	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTGTATGGACTGTCAA	NA	False	NA	4	True	ATTAAA	-20	NA	91429004	91457025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_91429147_91433144_91433217_91435214_91435291_91446015_91446037_91447299_91447385_91447777_91447862_91448605_91448730_91448908_91448946_91450552_91450630_91453600_91453825_91455339
ENSMUSG00000034292.14_3	chr1	+	5019	14	ISM	ENSMUSG00000034292.14	ENSMUST00000047242.9	3474	15	-34	4	13	-4	intron_retention	FALSE	canonical	2	37	junction_5	6.43952293429426	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTGTATGGACTGTCAA	8950	False	NA	4	True	ATTAAA	-20	NA	91422381	91457025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_91422611_91425674_91425744_91427223_91427386_91428494_91428633_91428726_91429147_91433144_91433217_91435214_91435291_91446015_91446037_91447299_91447385_91447777_91447862_91448605_91448730_91448908_91448946_91450552_91450630_91453600
ENSMUSG00000034292.14_6	chr1	+	2375	5	ISM	ENSMUSG00000034292.14	ENSMUST00000189341.7	2257	16	12	25176	12	-25176	5prime_fragment	FALSE	canonical	3	49	junction_3	4.55521678957215	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGCTATTACTTACTG	8949	False	NA	NA	False	NA	NA	NA	91422380	91430502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_91422611_91425674_91425744_91427223_91427386_91428494_91428633_91428726
ENSMUSG00000034295.11_0	chr18	+	4803	24	NIC	ENSMUSG00000034295.11	novel	4956	25	NA	NA	45	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	12.8794028205205	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACCATAAGAAATGTTTAT	NA	False	NA	NA	False	AATAAA	-13	NA	24842546	25266555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_24842831_24887275_24887383_24903539_24903605_25030693_25030762_25036949_25037056_25102216_25102312_25118270_25118383_25123029_25123125_25127472_25127617_25134847_25135090_25189316_25189452_25193382_25193434_25199273_25199483_25218390_25218670_25223086_25223965_25234582_25234742_25243111_25243295_25245602_25245723_25246566_25246729_25248755_25248947_25253175_25253369_25258799_25258975_25263589_25263752_25265967
ENSMUSG00000034295.11_16	chr18	+	3042	11	ISM	ENSMUSG00000034295.11	ENSMUST00000037097.9	5409	27	375937	3	-38979	-3	3prime_fragment	FALSE	canonical	3	39	junction_2	6.8854919940408	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACCATAAGAAATGTTTAT	NA	False	NA	NA	False	AATAAA	-13	NA	25218438	25266555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_25218670_25223086_25223965_25234582_25234742_25243111_25243295_25245602_25245723_25246566_25246729_25248755_25248947_25253175_25253369_25258799_25258975_25263589_25263752_25265967
ENSMUSG00000034295.11_18	chr18	+	2360	10	ISM	ENSMUSG00000034295.11	ENSMUST00000037097.9	5409	27	381038	1	-33878	-1	3prime_fragment	FALSE	canonical	3	39	junction_1	6.58280588604383	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATAAGAAATGTTTATTC	NA	False	NA	NA	False	AATAAA	-15	NA	25223539	25266557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_25223965_25234582_25234742_25243111_25243295_25245602_25245723_25246566_25246729_25248755_25248947_25253175_25253369_25258799_25258975_25263589_25263752_25265967
ENSMUSG00000034295.11_2	chr18	+	4928	25	FSM	ENSMUSG00000034295.11	ENSMUST00000234834.2	4956	25	27	1	27	-1	multi-exon	TRUE	canonical	3	28	junction_12	8.53414302799187	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATAAGAAATGTTTATTC	NA	False	NA	NA	False	AATAAA	-15	NA	24842528	25266557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_24842831_24887275_24887383_24903539_24903605_25030693_25030762_25036949_25037056_25102216_25102312_25118270_25118383_25123029_25123125_25127472_25127617_25134847_25135090_25161121_25161227_25189316_25189452_25193382_25193434_25199273_25199483_25218390_25218670_25223086_25223965_25234582_25234742_25243111_25243295_25245602_25245723_25246566_25246729_25248755_25248947_25253175_25253369_25258799_25258975_25263589_25263752_25265967
ENSMUSG00000034295.11_21	chr18	+	5375	27	FSM	ENSMUSG00000034295.11	ENSMUST00000037097.9	5409	27	31	3	31	-3	multi-exon	FALSE	canonical	0	0	junction_11	16.7332005306815	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACCATAAGAAATGTTTAT	NA	False	NA	NA	False	AATAAA	-13	NA	24842532	25266555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_24842831_24887275_24887383_24903539_24903605_25030693_25030762_25036949_25037056_25102216_25102312_25118270_25118383_25123029_25123125_25127472_25127617_25134847_25135090_25153718_25153815_25155678_25156036_25161121_25161227_25189316_25189452_25193382_25193434_25199273_25199483_25218390_25218670_25223086_25223965_25234582_25234742_25243111_25243295_25245602_25245723_25246566_25246729_25248755_25248947_25253175_25253369_25258799_25258975_25263589_25263752_25265967
ENSMUSG00000034295.11_29	chr18	+	3472	14	ISM	ENSMUSG00000034295.11	ENSMUST00000037097.9	5409	27	346830	1	-68086	-1	3prime_fragment	FALSE	canonical	3	28	junction_1	10.5645382036141	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATAAGAAATGTTTATTC	NA	False	NA	NA	False	AATAAA	-15	NA	25189331	25266557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_25189452_25193382_25193434_25199273_25199483_25218390_25218670_25223086_25223965_25234582_25234742_25243111_25243295_25245602_25245723_25246566_25246729_25248755_25248947_25253175_25253369_25258799_25258975_25263589_25263752_25265967
ENSMUSG00000034297.15_0	chr11	-	2985	1	ISM	ENSMUSG00000034297.15	ENSMUST00000043624.9	10546	30	87582	3	8580	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGTGGTGTCTCATTC	NA	False	NA	-3	True	AATAAA	-15	NA	86160846	86157861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_86157900_86160800
ENSMUSG00000034297.15_10	chr11	-	3746	15	ISM	ENSMUSG00000034297.15	ENSMUST00000043624.9	10546	30	58866	3378	-19744	2136	3prime_fragment	FALSE	canonical	3	47	junction_14	11.8019368870416	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTAGAGTATTATTTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	86189562	86161236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_86161945_86163288_86163390_86166199_86166374_86167645_86167795_86169295_86169482_86169589_86169749_86170418_86170562_86174025_86174250_86174576_86174769_86175938_86176159_86177259_86177717_86178916_86179107_86179758_86179983_86181868_86182031_86189105
ENSMUSG00000034297.15_14	chr11	-	5928	14	ISM	ENSMUSG00000034297.15	ENSMUST00000043624.9	10546	30	66500	637	-12110	-637	3prime_fragment	FALSE	canonical	3	49	junction_2	10.9587715806204	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATGTGTTCAACAATT	NA	False	NA	NA	False	ATTAAA	-7	NA	86181928	86158495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_86161945_86163288_86163390_86166199_86166374_86167645_86167795_86169295_86169482_86169589_86169749_86170418_86170562_86174025_86174250_86174576_86174769_86175938_86176159_86177259_86177717_86178916_86179107_86179758_86179983_86181868
ENSMUSG00000034297.15_3	chr11	-	8164	30	FSM	ENSMUSG00000034297.15	ENSMUST00000043624.9	10546	30	-691	3073	-691	2441	multi-exon	FALSE	canonical	3	30	junction_26	15.4932381399703	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTGTACTATGGTTTA	8465	False	NA	NA	False	AATAAA	-18	NA	86249119	86160931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86161945_86163288_86163390_86166199_86166374_86167645_86167795_86169295_86169482_86169589_86169749_86170418_86170562_86174025_86174250_86174576_86174769_86175938_86176159_86177259_86177717_86178916_86179107_86179758_86179983_86181868_86182031_86189105_86190023_86191475_86191673_86191955_86192171_86192290_86192382_86194359_86194482_86197809_86197889_86199524_86199739_86210173_86210858_86218627_86218739_86219272_86219436_86219993_86220189_86221813_86222012_86222708_86222855_86236685_86236855_86246099_86246335_86248285
ENSMUSG00000034297.15_6	chr11	-	5936	11	ISM	ENSMUSG00000034297.15	ENSMUST00000043624.9	10546	30	70859	8	-7751	-8	3prime_fragment	FALSE	canonical	3	49	junction_2	10.555093557141	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTTCCTTGTGGTGTCT	NA	False	NA	-8	True	AATAAA	-10	NA	86177569	86157866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_86161945_86163288_86163390_86166199_86166374_86167645_86167795_86169295_86169482_86169589_86169749_86170418_86170562_86174025_86174250_86174576_86174769_86175938_86176159_86177259
ENSMUSG00000034297.15_8	chr11	-	5527	10	ISM	ENSMUSG00000034297.15	ENSMUST00000043624.9	10546	30	72374	3	-6236	-3	3prime_fragment	TRUE	canonical	3	49	junction_2	11.049831013735	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGTGGTGTCTCATTC	NA	False	NA	-3	True	AATAAA	-15	NA	86176054	86157861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_86161945_86163288_86163390_86166199_86166374_86167645_86167795_86169295_86169482_86169589_86169749_86170418_86170562_86174025_86174250_86174576_86174769_86175938
ENSMUSG00000034300.18_0	chr18	+	4264	5	FSM	ENSMUSG00000034300.18	ENSMUST00000049281.12	4475	5	205	6	205	-6	multi-exon	FALSE	canonical	3	4	junction_1	15.2868407462104	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACCTTGTGTACGATA	4642	False	NA	20	True	AATAAA	-27	NA	34892163	34906807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_34892198_34895547_34895778_34896125_34896184_34901220_34902006_34903650
ENSMUSG00000034300.18_1	chr18	+	4241	6	NNC	ENSMUSG00000034300.18	novel	4256	5	NA	NA	-3	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	15.2761251631426	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACCTTGTGTACGATA	5084	False	NA	20	True	AATAAA	-27	NA	34892605	34906807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_34892651_34895547_34895778_34896125_34896184_34901220_34902006_34903650_34904333_34904366
ENSMUSG00000034300.18_15	chr18	+	3565	3	NNC	ENSMUSG00000034300.18	novel	4200	4	NA	NA	8942	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	19	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGTGTACGATAGTGT	NA	False	NA	24	True	AATAAA	-31	NA	34901567	34906811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_34902006_34903650_34904333_34904366
ENSMUSG00000034300.18_17	chr18	+	3635	2	ISM	ENSMUSG00000034300.18	ENSMUST00000235929.2	4200	4	8902	6	8902	-6	3prime_fragment	FALSE	canonical	3	38	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACCTTGTGTACGATA	NA	False	NA	20	True	AATAAA	-27	NA	34901527	34906807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_34902006_34903650
ENSMUSG00000034300.18_18	chr18	+	2342	1	ISM	ENSMUSG00000034300.18	ENSMUST00000049281.12	4475	5	12507	6	11840	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACCTTGTGTACGATA	NA	False	NA	20	True	AATAAA	-27	NA	34904465	34906807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_34904500_34906800
ENSMUSG00000034300.18_4	chr18	+	4271	5	FSM	ENSMUSG00000034300.18	ENSMUST00000097622.4	4256	5	1	-16	1	-6	multi-exon	FALSE	canonical	3	31	junction_2	5.02493781056044	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACCTTGTGTACGATA	5088	False	NA	20	True	AATAAA	-27	NA	34892609	34906807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_34892651_34895547_34895778_34896125_34896184_34901220_34902006_34903650
ENSMUSG00000034300.18_7	chr18	+	4376	4	NIC	ENSMUSG00000034300.18	novel	4256	5	NA	NA	-175	3	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	12.657891697365	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCATTTTCCCAAGCAAC	4912	False	NA	7	True	AATAAA	-14	NA	34892433	34906794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_34892651_34895547_34895778_34901220_34902006_34903650
ENSMUSG00000034303.9_1	chr9	-	7297	16	FSM	ENSMUSG00000034303.9	ENSMUST00000239439.2	3525	16	29	-3801	-6	3801	multi-exon	FALSE	canonical	2	5	junction_9	5.33166640616859	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATACTTTGTATTGACTT	NA	False	NA	-4	True	AATACA	-14	NA	37259659	37183329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_37187862_37188653_37188778_37190262_37190412_37190869_37191047_37214175_37214280_37215605_37215702_37222613_37222725_37224672_37224796_37225582_37225649_37226454_37227184_37227703_37227824_37231692_37231807_37253731_37253918_37255179_37255330_37259033_37259220_37259329
ENSMUSG00000034303.9_12	chr9	-	2037	4	FSM	ENSMUSG00000034303.9	ENSMUST00000217238.3	1747	4	-28	-262	3	137	multi-exon	FALSE	canonical	3	11	junction_3	4.92160768674447	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGACCATGTGAAAACAAA	NA	False	NA	NA	False	AAGAAA	-17	NA	37259681	37252568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_37253918_37255179_37255330_37259033_37259220_37259329
ENSMUSG00000034303.9_19	chr9	-	7092	15	NIC	ENSMUSG00000034303.9	novel	3331	16	NA	NA	-1	3935	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	5.94575822047336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATGACCATTGAATAT	NA	False	NA	NA	False	AGTAAA	-7	NA	37259678	37183195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_37187862_37190262_37190412_37190869_37191047_37214175_37214280_37215605_37215702_37222613_37222725_37224672_37224796_37225582_37225649_37226454_37227184_37227703_37227824_37231692_37231807_37253731_37253918_37255179_37255330_37259033_37259220_37259563
ENSMUSG00000034303.9_2	chr9	-	4403	16	FSM	ENSMUSG00000034303.9	ENSMUST00000213633.2	3331	16	51	-1123	0	1123	multi-exon	FALSE	canonical	2	5	junction_9	5.33166640616859	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTAGCTGTACTATTTTT	NA	False	NA	NA	False	NA	NA	NA	37259677	37186007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_37187862_37188653_37188778_37190262_37190412_37190869_37191047_37214175_37214280_37215605_37215702_37222613_37222725_37224672_37224796_37225582_37225649_37226454_37227184_37227703_37227824_37231692_37231807_37253731_37253918_37255179_37255330_37259033_37259220_37259563
ENSMUSG00000034308.14_1	chr8	-	2691	4	FSM	ENSMUSG00000034308.14	ENSMUST00000174450.2	819	4	37	-1909	37	-22	multi-exon	FALSE	canonical	0	0	junction_3	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAAAAGGAAAAAT	NA	False	NA	-22	True	AATGAA	-25	NA	118400391	118388162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_118390572_118391725_118391820_118397947_118398083_118400338
ENSMUSG00000034311.4_0	chrX	+	4601	30	FSM	ENSMUSG00000034311.4	ENSMUST00000048962.4	4983	30	378	4	378	-4	multi-exon	TRUE	canonical	3	204	junction_20	20.3345386022518	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGTTGAAGGAGATCCTT	NA	False	NA	14	True	AATAAA	-18	NA	99669720	99770816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99713514_99713577_99720892_99721026_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741148_99747647_99747732_99748395_99748510_99755397_99755554_99755667_99755769_99757483_99757614_99759186_99759358_99759876_99759985_99760936_99761015_99761542_99761642_99762099_99762277_99768247_99768365_99769733_99769857_99770064
ENSMUSG00000034311.4_7	chrX	+	4503	29	NIC	ENSMUSG00000034311.4	novel	4983	30	NA	NA	377	-4	combination_of_known_junctions	FALSE	canonical	3	49	junction_25	40.8997498869654	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGTTGAAGGAGATCCTT	NA	False	NA	14	True	AATAAA	-18	NA	99669719	99770816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99713514_99713577_99720892_99721026_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741148_99747647_99747732_99748395_99748510_99755397_99755554_99755667_99755769_99757483_99757614_99759186_99759358_99759876_99759985_99760936_99761015_99762099_99762277_99768247_99768365_99769733_99769857_99770064
ENSMUSG00000034312.16_0	chr6	-	2162	1	FSM	ENSMUSG00000034312.16	ENSMUST00000204983.2	2691	1	-256	785	-256	598	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGTTGGAGTGGTAACA	NA	False	NA	-4	True	AATACA	-18	NA	90639526	90637364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_90637400_90639500
ENSMUSG00000034312.16_1	chr6	-	5561	14	NIC	ENSMUSG00000034312.16	novel	6490	14	NA	NA	-101	598	intron_retention	FALSE	canonical	3	17	junction_13	8.16689811691508	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGTTGGAGTGGTAACA	2746	False	NA	-4	True	AATACA	-18	NA	90713770	90637364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_90639938_90641003_90641054_90644881_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540_90671833_90713558
ENSMUSG00000034312.16_10	chr6	-	4319	12	ISM	ENSMUSG00000034312.16	ENSMUST00000101151.10	6490	14	120034	786	4607	597	3prime_fragment	FALSE	canonical	3	28	junction_1	6.45902533393877	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATAGTTGGAGTGGTAAC	3411	False	NA	-5	True	AATACA	-17	NA	90667071	90637365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_90639938_90641003_90641054_90644881_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561
ENSMUSG00000034312.16_12	chr6	-	6648	12	ISM	ENSMUSG00000034312.16	ENSMUST00000101153.10	8036	14	19	8193	19	-1469	5prime_fragment	FALSE	canonical	2	9	junction_11	10.0494644403167	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTCCCTTTTGCCAAG	NA	False	NA	NA	False	TATAAA	-22	NA	90693492	90641262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540_90671833_90693189
ENSMUSG00000034312.16_15	chr6	-	3251	12	NIC	ENSMUSG00000034312.16	novel	8036	14	NA	NA	-77	2846	intron_retention	FALSE	canonical	3	17	junction_11	8.08835506164917	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGCCGCTGGGCCTTTT	2770	False	NA	NA	False	AATGAA	-19	NA	90713746	90644544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540_90671833_90713558
ENSMUSG00000034312.16_3	chr6	-	6021	16	NIC	ENSMUSG00000034312.16	novel	3500	16	NA	NA	23	614	intron_retention	FALSE	canonical	0	0	junction_15	15.5626333104509	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTAAATATGCCGGCTT	NA	False	NA	12	True	AATACA	-34	NA	90965644	90637348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_90639938_90641003_90641054_90644881_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540_90671833_90764099_90764145_90850421_90850452_90965063
ENSMUSG00000034312.16_4	chr6	-	5606	13	NIC	ENSMUSG00000034312.16	novel	6490	14	NA	NA	15	598	intron_retention	FALSE	canonical	2	4	junction_1	13.2748718344933	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGTTGGAGTGGTAACA	NA	False	NA	-4	True	AATACA	-18	NA	90693496	90637364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_90639938_90644881_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540_90671833_90693189
ENSMUSG00000034312.16_5	chr6	-	5651	14	NIC	ENSMUSG00000034312.16	novel	6490	14	NA	NA	20	598	intron_retention	FALSE	canonical	2	9	junction_13	9.75195322568645	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGTTGGAGTGGTAACA	NA	False	NA	-4	True	AATACA	-18	NA	90693491	90637364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_90639938_90641003_90641054_90644881_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540_90671833_90693189
ENSMUSG00000034312.16_7	chr6	-	3633	14	NIC	ENSMUSG00000034312.16	novel	8036	14	NA	NA	-86	615	intron_retention	FALSE	canonical	0	0	junction_1	12.5890907972177	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAAATATGCCGGCTTT	2761	False	NA	13	True	AATACA	-35	NA	90713755	90637347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_90638008_90641003_90641054_90644881_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540_90671833_90713558
ENSMUSG00000034312.16_8	chr6	-	3801	11	NIC	ENSMUSG00000034312.16	novel	6490	14	NA	NA	5098	620	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	11.8676029593174	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATATGCCGGCTTTTTTTT	3902	False	NA	18	True	AATACA	-40	NA	90666580	90637342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_90639938_90644881_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561
ENSMUSG00000034317.15_0	chr3	-	2903	3	FSM	ENSMUSG00000034317.15	ENSMUST00000107802.8	2939	3	19	17	-13	-17	multi-exon	FALSE	canonical	3	361	junction_2	117	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGAAGTCTTAGAAAGTG	NA	False	NA	-23	True	AATAAA	-9	NA	68952069	68942637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_68945342_68951100_68951176_68951945
ENSMUSG00000034317.15_1	chr3	-	1952	1	ISM	ENSMUSG00000034317.15	ENSMUST00000107802.8	2939	3	7504	12	7464	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTTAGAAAGTGGTGAC	NA	False	NA	-18	True	AATAAA	-14	NA	68944584	68942632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_68942600_68944600
ENSMUSG00000034317.15_3	chr3	-	3083	3	FSM	ENSMUSG00000034317.15	ENSMUST00000136512.3	1553	3	2	-1532	2	-17	multi-exon	FALSE	canonical	3	60	junction_2	267.5	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGAAGTCTTAGAAAGTG	NA	False	NA	-23	True	AATAAA	-9	NA	68952046	68942637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_68945342_68951100_68951176_68951742
ENSMUSG00000034317.15_6	chr3	-	3104	3	NIC	ENSMUSG00000034317.15	novel	2939	3	NA	NA	-6	-16	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	286	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAAGTCTTAGAAAGTGG	NA	False	NA	-22	True	AATAAA	-10	NA	68952062	68942636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_68945342_68951100_68951176_68951738
ENSMUSG00000034320.15_1	chr18	-	3902	1	ISM	ENSMUSG00000034320.15	ENSMUST00000146409.8	7814	4	14771	21	3528	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAATATTACTGTGTAA	1595	False	NA	-23	True	AATAAA	-8	NA	61329913	61326011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_61326000_61329900
ENSMUSG00000034320.15_12	chr18	-	1910	1	ISM	ENSMUSG00000034320.15	ENSMUST00000146409.8	7814	4	12234	4550	991	-247	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGCAGTGGAAGTCTT	NA	False	NA	NA	False	AAGAAA	-13	NA	61332450	61330540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_61330500_61332400
ENSMUSG00000034320.15_3	chr18	-	7544	3	ISM	ENSMUSG00000034320.15	ENSMUST00000146409.8	7814	4	7219	3	-4024	-3	3prime_fragment	FALSE	canonical	3	28	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATTTTAGTGCTGGAA	NA	False	NA	-5	True	AATAAA	-26	NA	61337465	61325993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_61332731_61334752_61335476_61337381
ENSMUSG00000034320.15_7	chr18	-	3236	4	FSM	ENSMUSG00000034320.15	ENSMUST00000146409.8	7814	4	22	4556	22	-253	multi-exon	FALSE	canonical	3	28	junction_2	1.4142135623731	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCAGAATGGCAGTGGA	8737	False	NA	NA	False	AAGAAA	-7	NA	61344662	61330546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_61332731_61334752_61335476_61337381_61337518_61344469
ENSMUSG00000034321.15_0	chr19	-	1515	7	NIC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-2	582	combination_of_known_splicesites	FALSE	canonical	3	40	junction_4	328.565569305935	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCATTATGTTTAGTGAAA	NA	False	NA	-17	True	AATAAA	-13	NA	41921739	41911422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41919794_41919870_41921487_41921604_41921690
ENSMUSG00000034321.15_1	chr19	-	1025	8	FSM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	-4	-3	-2	3	multi-exon	FALSE	canonical	3	822	junction_7	62.4257926808842	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGAAAAAATTCTTTTCA	NA	False	NA	-30	True	TATAAA	-25	NA	41921739	41912001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
ENSMUSG00000034321.15_7	chr19	-	977	7	ISM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	131	-3	83	3	3prime_fragment	FALSE	canonical	3	831	junction_4	54.234060638434	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGAAAAAATTCTTTTCA	NA	False	NA	-30	True	TATAAA	-25	NA	41921604	41912001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487
ENSMUSG00000034324.17_0	chr5	+	3840	9	FSM	ENSMUSG00000034324.17	ENSMUST00000119026.8	5134	9	-14	1308	-14	-1	multi-exon	TRUE	canonical	0	0	junction_2	1.8328597873269	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCGGTTTATATTTCTA	NA	False	NA	NA	False	AATAAA	-16	NA	127318857	127641549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_127319085_127436618_127437505_127539967_127540115_127581925_127582110_127613421_127613566_127628566_127628773_127630137_127630412_127631689_127631882_127639969
ENSMUSG00000034327.18_0	chr14	+	2988	12	FSM	ENSMUSG00000034327.18	ENSMUST00000150768.8	1302	12	2	-1688	2	-4	multi-exon	FALSE	canonical	3	52	junction_9	22.4881970879051	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACGGCCTGTTTCTGCTCT	NA	False	NA	6	True	AATAAA	-18	NA	67953712	67979606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825_67975960_67977744
ENSMUSG00000034327.18_1	chr14	+	2909	12	NIC	ENSMUSG00000034327.18	novel	3157	11	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	33.5164940275803	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACGGCCTGTTTCTGCTCT	NA	False	NA	6	True	AATAAA	-18	NA	67953588	67979606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_67953631_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825_67975960_67977744
ENSMUSG00000034327.18_2	chr14	+	2750	11	NIC	ENSMUSG00000034327.18	novel	3157	11	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	37.6256561404582	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCCTGTTTCTGCTCTTG	NA	False	NA	8	True	AATAAA	-20	NA	67953599	67979608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_67953631_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67975054_67975161_67975825_67975960_67977744
ENSMUSG00000034327.18_26	chr14	+	4537	3	ISM	ENSMUSG00000034327.18	ENSMUST00000156700.2	3098	12	18887	3	18887	-3	3prime_fragment	FALSE	canonical	3	84	junction_1	3	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGGCCTGTTTCTGCTCTT	NA	False	NA	7	True	AATAAA	-19	NA	67972620	67979607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_67975161_67975825_67975960_67977744
ENSMUSG00000034327.18_28	chr14	+	1503	1	ISM	ENSMUSG00000034327.18	ENSMUST00000078053.13	3157	11	24557	153	24370	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACGGCCTGTTTCTGCTCT	NA	False	NA	6	True	AATAAA	-18	NA	67978103	67979606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_67978100_67979600
ENSMUSG00000034327.18_30	chr14	+	3032	12	NIC	ENSMUSG00000034327.18	novel	2528	11	NA	NA	5	-3	intron_retention	FALSE	canonical	3	8	junction_4	38.6107936778015	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGGCCTGTTTCTGCTCTT	NA	False	NA	7	True	AATAAA	-19	NA	67953593	67979607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_67953631_67962006_67962129_67963775_67963820_67966098_67966196_67966672_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825_67975960_67977744
ENSMUSG00000034327.18_6	chr14	+	2839	11	FSM	ENSMUSG00000034327.18	ENSMUST00000078053.13	3157	11	165	153	1	-4	multi-exon	FALSE	canonical	3	27	junction_8	27.0325729445053	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACGGCCTGTTTCTGCTCT	NA	False	NA	6	True	AATAAA	-18	NA	67953711	67979606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67975054_67975161_67975825_67975960_67977744
ENSMUSG00000034327.18_7	chr14	+	3096	12	FSM	ENSMUSG00000034327.18	ENSMUST00000156700.2	3098	12	-2	4	-2	-4	multi-exon	FALSE	canonical	3	8	junction_4	31.9689932422906	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACGGCCTGTTTCTGCTCT	NA	False	NA	6	True	AATAAA	-18	NA	67953731	67979606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966672_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825_67975960_67977744
ENSMUSG00000034329.17_1	chr11	-	3874	20	FSM	ENSMUSG00000034329.17	ENSMUST00000044423.4	6931	20	15	3042	-12	-3042	multi-exon	FALSE	canonical	3	63	junction_1	12.1006856333757	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATCGGATTTTAAGTATG	NA	False	NA	-2	True	GATAAA	-44	NA	86092004	85952005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_85952872_85955603_85955928_85965104_85965188_85968682_85968796_85999592_85999715_86001168_86001329_86026084_86026247_86029588_86029730_86029839_86030006_86034082_86034238_86036887_86037021_86039183_86039384_86043413_86043636_86048413_86048705_86077790_86077920_86080557_86080686_86083640_86083815_86088694_86088807_86089697_86089821_86091934
ENSMUSG00000034329.17_10	chr11	-	4276	20	NIC	ENSMUSG00000034329.17	novel	6931	20	NA	NA	6	-2655	combination_of_known_junctions	FALSE	canonical	3	7	junction_19	19.7350876413186	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACACTTTAGCCATATG	NA	False	NA	NA	False	TTTAAA	-4	NA	86091984	85951618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_85952872_85955603_85955928_85965104_85965188_85968682_85968796_85999592_85999715_86001168_86001329_86026084_86026247_86029588_86029730_86029839_86030006_86034082_86034238_86036887_86037021_86039183_86039384_86043413_86043636_86048413_86048705_86077790_86077920_86080557_86080686_86083640_86083815_86088694_86088807_86089697_86089821_86091899
ENSMUSG00000034329.17_3	chr11	-	3969	2	ISM	ENSMUSG00000034329.17	ENSMUST00000044423.4	6931	20	136352	3	136323	-3	3prime_fragment	FALSE	canonical	3	63	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGAAAAAGGTCCGATGA	NA	False	NA	NA	False	AATAAA	-11	NA	85955667	85948966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_85952872_85955603
ENSMUSG00000034329.17_6	chr11	-	1581	1	ISM	ENSMUSG00000034329.17	ENSMUST00000044423.4	6931	20	141475	0	141446	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAAGGTCCGATGACTT	NA	False	NA	NA	False	AATAAA	-14	NA	85950544	85948963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_85949000_85950500
ENSMUSG00000034330.11_0	chr8	+	4315	33	FSM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	-22	5	-22	-5	multi-exon	TRUE	canonical	3	77	junction_7	32.3080872228611	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAGCGTTCTGTACCTGA	NA	False	NA	6	True	AATAAA	-18	NA	118225007	118361876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_118225169_118230873_118231113_118282713_118282858_118284041_118284136_118284807_118284856_118293540_118293626_118294902_118294987_118300079_118300124_118300655_118300729_118304561_118304664_118306514_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
ENSMUSG00000034330.11_24	chr8	+	3432	23	ISM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	81294	5	81294	-5	3prime_fragment	FALSE	canonical	3	97	junction_3	29.2337756091073	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAGCGTTCTGTACCTGA	NA	False	NA	6	True	AATAAA	-18	NA	118306323	118361876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
ENSMUSG00000034330.11_25	chr8	+	3333	24	NNC	ENSMUSG00000034330.11	novel	4298	33	NA	NA	81294	-5	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	35.9048311486207	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAGCGTTCTGTACCTGA	NA	False	NA	6	True	AATAAA	-18	NA	118306323	118361876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_118306416_118306514_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
ENSMUSG00000034330.11_28	chr8	+	2522	17	ISM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	91581	5	91581	-5	3prime_fragment	FALSE	canonical	3	106	junction_1	28.5097982060554	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAGCGTTCTGTACCTGA	7197	False	NA	6	True	AATAAA	-18	NA	118316610	118361876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
ENSMUSG00000034330.11_31	chr8	+	1869	12	ISM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	102770	4	102770	-4	3prime_fragment	FALSE	canonical	3	117	junction_1	25.4749917882532	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGCGTTCTGTACCTGAT	NA	False	NA	7	True	AATAAA	-19	NA	118327799	118361877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
ENSMUSG00000034330.11_35	chr8	+	1234	7	ISM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	112475	4	112475	-4	3prime_fragment	FALSE	canonical	3	152	junction_3	15.2797978462486	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGCGTTCTGTACCTGAT	NA	False	NA	7	True	AATAAA	-19	NA	118337504	118361877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
ENSMUSG00000034333.16_0	chr15	+	5406	3	FSM	ENSMUSG00000034333.16	ENSMUST00000041297.15	5425	3	17	2	17	-2	multi-exon	FALSE	canonical	3	163	junction_1	12	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGCTGACTGATGATGGC	NA	False	NA	33	True	ATTAAA	-20	NA	88635879	88668717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_88636006_88638962_88639137_88663611
ENSMUSG00000034333.16_11	chr15	+	3659	1	ISM	ENSMUSG00000034333.16	ENSMUST00000041297.15	5425	3	29196	2	29096	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGCTGACTGATGATGGC	NA	False	NA	33	True	ATTAAA	-20	NA	88665058	88668717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_88665100_88668700
ENSMUSG00000034333.16_2	chr15	+	5223	2	NIC	ENSMUSG00000034333.16	novel	5425	3	NA	NA	26	-2	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGCTGACTGATGATGGC	NA	False	NA	33	True	ATTAAA	-20	NA	88635888	88668717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_88636006_88663611
ENSMUSG00000034334.9_1	chr13	-	1317	6	FSM	ENSMUSG00000034334.9	ENSMUST00000040106.9	1152	6	43	-208	43	0	multi-exon	FALSE	canonical	1	2	junction_4	1.62480768092719	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGTTAGATGTACAGTA	NA	False	NA	NA	False	AATAAA	-15	NA	92620478	92586132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_92586761_92603484_92603621_92604452_92604671_92610470_92610637_92614335_92614462_92620435
ENSMUSG00000034336.4_0	chr19	+	2683	3	FSM	ENSMUSG00000034336.4	ENSMUST00000037636.4	3240	3	556	1	556	-1	multi-exon	FALSE	canonical	3	49	junction_2	0.5	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGACTCGTGCTCTGTGG	NA	False	NA	11	True	ATTAAA	-14	NA	47003692	47013765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_47004259_47010271_47010397_47011773
ENSMUSG00000034341.18_0	chr11	-	1764	8	FSM	ENSMUSG00000034341.18	ENSMUST00000074628.13	1826	8	49	13	26	-13	multi-exon	FALSE	canonical	3	961	junction_1	94.6975852546475	1121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGTGACTGGAGGTTCTC	NA	False	NA	19	True	AGTAAA	-3	NA	115977772	115969411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
ENSMUSG00000034341.18_2	chr11	-	705	1	ISM	ENSMUSG00000034341.18	ENSMUST00000074628.13	1826	8	7712	6	2202	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGAGGTTCTCTGACTCT	NA	False	NA	-17	True	AGTAAA	-10	NA	115970109	115969404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115969400_115970100
ENSMUSG00000034341.18_3	chr11	-	1602	7	FSM	ENSMUSG00000034341.18	ENSMUST00000106444.4	1012	7	45	-635	22	-44	multi-exon	FALSE	canonical	3	34	junction_3	412.44046708451	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGCTACAACTGTGA	NA	False	NA	-12	True	AATAAA	-18	NA	115977776	115969442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115972057_115972151_115973101_115973238_115974664_115974774_115977692
ENSMUSG00000034342.10_0	chr9	-	894	1	ISM	ENSMUSG00000034342.10	ENSMUST00000206720.2	11372	16	90177	3	2383	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTGAGTTCTGGTTCAC	NA	False	NA	-3	True	AATAAA	-18	NA	44055169	44054275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44054300_44055200
ENSMUSG00000034342.10_6	chr9	-	2769	17	NIC	ENSMUSG00000034342.10	novel	3452	18	NA	NA	1	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_1	3.99804639792987	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACACTTGAGTTCTGGTT	2975	False	NA	-6	True	AATAAA	-15	NA	44145285	44054278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44054352_44062887_44063035_44064085_44064266_44065057_44065156_44065486_44065628_44067912_44068008_44069810_44070189_44070273_44070406_44074635_44074840_44075422_44075555_44076098_44076187_44077749_44077888_44078506_44078629_44080316_44080474_44084549_44084697_44112256_44112505_44144996
ENSMUSG00000034342.10_9	chr9	-	3030	16	FSM	ENSMUSG00000034342.10	ENSMUST00000206720.2	11372	16	63	8279	-2	168	multi-exon	FALSE	canonical	1	3	junction_5	3.59382185918495	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGGTCTTAAGAGTGTT	2977	False	NA	NA	False	AATGAA	-29	NA	44145283	44062551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44063035_44064085_44064266_44065057_44065156_44065486_44065628_44067912_44068008_44069810_44070189_44070273_44070406_44074635_44074840_44075422_44075555_44076098_44076187_44077749_44077888_44078506_44078629_44080316_44080474_44084549_44084697_44112256_44112505_44144996
ENSMUSG00000034343.15_0	chr1	+	1257	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	19	87	1	11	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATTTTTTCTATTCTTA	338	False	NA	NA	False	NA	NA	NA	91178059	91213660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034343.15_1	chr1	+	1299	11	FSM	ENSMUSG00000034343.15	ENSMUST00000059743.12	1154	11	24	-169	-2	-18	multi-exon	FALSE	canonical	3	14	junction_1	126.177692164661	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGTAATTTGTACAATT	335	False	NA	NA	False	NA	NA	NA	91178056	91213631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91178160_91181481_91181550_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034343.15_2	chr1	+	1242	10	FSM	ENSMUSG00000034343.15	ENSMUST00000171165.8	5654	10	0	4412	0	-2	multi-exon	FALSE	canonical	3	68	junction_1	86.300651614781	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGATGCTTTAATTATT	337	False	NA	NA	False	NA	NA	NA	91178058	91213647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91178160_91181984_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034343.15_4	chr1	+	1274	10	FSM	ENSMUSG00000034343.15	ENSMUST00000191368.7	1110	10	-30	-134	-2	-20	multi-exon	FALSE	canonical	3	40	junction_1	94.7511360236793	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTTGTAATTTGTACAA	335	False	NA	NA	False	NA	NA	NA	91178056	91213629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91178160_91181936_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034345.15_0	chr17	+	518	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	59	1668	8	-283	multi-exon	FALSE	canonical	3	932	junction_1	74.5	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCTTTTTAAGTGTTAT	1749	False	NA	46	True	ATTAAA	-36	NA	6130119	6135124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_6130187_6131076_6131150_6134746
ENSMUSG00000034345.15_1	chr17	+	1345	2	NIC	ENSMUSG00000034345.15	novel	879	3	NA	NA	-24	-285	intron_retention	FALSE	canonical	3	1081	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGGCTTTTTAAGTGTT	1810	False	NA	44	True	ATTAAA	-34	NA	6130180	6135122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6131150_6134746
ENSMUSG00000034345.15_3	chr17	+	321	1	ISM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	4726	1685	4582	-300	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTTTAGCTGCAATTT	6416	False	NA	29	True	ATTAAA	-19	NA	6134786	6135107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_6134800_6135100
ENSMUSG00000034349.15_1	chr3	+	4057	24	FSM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	251	8	-2	-3	multi-exon	FALSE	canonical	3	521	junction_3	142.05353233605	1164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGAATGACAAGTTTCC	NA	False	NA	12	True	TATAAA	-13	NA	68912321	68941948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
ENSMUSG00000034354.18_0	chr11	-	5630	18	FSM	ENSMUSG00000034354.18	ENSMUST00000109943.10	5674	18	35	9	35	-2	multi-exon	FALSE	canonical	3	144	junction_2	25.6297837124855	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATCTGCGAACGAGTTC	NA	False	NA	-21	True	AATAAA	-18	NA	4544780	4430876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4432940_4435362_4435452_4437233_4438633_4439621_4439768_4440977_4441149_4441806_4441993_4442718_4442915_4447337_4447450_4447930_4448063_4448887_4449094_4454031_4454146_4457589_4457687_4467740_4467908_4470831_4470915_4477835_4477953_4478316_4478407_4481221_4481306_4544602
ENSMUSG00000034354.18_2	chr11	-	5737	19	NIC	ENSMUSG00000034354.18	novel	5674	18	NA	NA	35	-6	combination_of_known_junctions	FALSE	canonical	3	60	junction_3	50.097466730759	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGTGGCATCTGCGAACGA	NA	False	NA	-25	True	AATAAA	-14	NA	4544780	4430880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_4432940_4435362_4435452_4435878_4435990_4437233_4438633_4439621_4439768_4440977_4441149_4441806_4441993_4442718_4442915_4447337_4447450_4447930_4448063_4448887_4449094_4454031_4454146_4457589_4457687_4467740_4467908_4470831_4470915_4477835_4477953_4478316_4478407_4481221_4481306_4544602
ENSMUSG00000034354.18_4	chr11	-	5712	19	NNC	ENSMUSG00000034354.18	novel	5534	18	NA	NA	34	-1	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_18	68.2081961694587	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATCTGCGAACGAGTTCT	NA	False	NA	-20	True	AATAAA	-19	NA	4544781	4430875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_4432940_4435362_4435452_4437233_4438633_4439621_4439768_4440977_4441149_4441806_4441993_4442718_4442915_4447337_4447450_4447930_4448063_4448887_4449094_4454031_4454146_4457589_4457687_4467740_4467908_4470831_4470915_4477835_4477953_4478316_4478407_4481221_4481306_4496188_4496269_4544602
ENSMUSG00000034354.18_8	chr11	-	3174	3	ISM	ENSMUSG00000034354.18	ENSMUST00000040448.13	5534	18	58015	0	113	0	3prime_fragment	FALSE	canonical	3	144	junction_2	51.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCTGCGAACGAGTTCTA	2916	False	NA	-19	True	AATAAA	-20	NA	4438253	4430874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_4432940_4435362_4435452_4437233
ENSMUSG00000034361.11_0	chr8	+	2296	16	FSM	ENSMUSG00000034361.11	ENSMUST00000048653.10	2342	16	40	6	-9	-6	multi-exon	FALSE	canonical	2	2	junction_4	2.64491125665032	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTGTCAAGCTCCTTC	NA	False	NA	NA	False	AATAAA	-13	NA	95259657	95297153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95259822_95274955_95275174_95277797_95277978_95278367_95278443_95280017_95280090_95281302_95281387_95281557_95281648_95282136_95282236_95282599_95282687_95284047_95284108_95284752_95284887_95286736_95286792_95289365_95289418_95290584_95290719_95295218_95295456_95296598
ENSMUSG00000034371.10_0	chr19	-	1865	1	Genic_Genomic	ENSMUSG00000034371.10	novel	NA	NA	NA	NA	15204	601	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10566418	10564553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_-_10564600_10566400
ENSMUSG00000034371.10_2	chr19	-	2436	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236950.2	2437	18	-2	3	-2	0	multi-exon	FALSE	canonical	3	18	junction_17	12.9229818620786	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGACTTTGTCCCTGTTT	9787	False	NA	-26	True	AATAAA	-14	NA	10582750	10569563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582582
ENSMUSG00000034371.10_4	chr19	-	2291	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236607.2	2516	18	222	3	0	-1	multi-exon	FALSE	canonical	3	13	junction_17	13.858404068355	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGGACTTTGTCCCTGTT	9741	False	NA	-27	True	AATAAA	-13	NA	10582796	10569564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582772
ENSMUSG00000034371.10_5	chr19	-	2714	18	NIC	ENSMUSG00000034371.10	novel	2437	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_17	12.7406930547585	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGACTTTGTCCCTGTTT	9787	False	NA	-26	True	AATAAA	-14	NA	10582750	10569563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582304
ENSMUSG00000034377.11_1	chr17	+	814	3	NIC	ENSMUSG00000034377.11	novel	3147	2	NA	NA	-10	2	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGAGTTTTCCTTAGAG	NA	False	NA	NA	False	AATAAA	-15	NA	6157155	6175112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6157272_6172102_6172620_6174931
ENSMUSG00000034377.11_10	chr17	+	5912	2	ISM	ENSMUSG00000034377.11	ENSMUST00000039655.3	9687	14	94557	11	53	-11	3prime_fragment	FALSE	canonical	3	25	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGATCAAAAAATATCAATTA	NA	False	NA	NA	False	AATAAA	-8	NA	6282979	6290892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_6284500_6286500
ENSMUSG00000034377.11_11	chr17	+	3488	1	ISM	ENSMUSG00000034377.11	ENSMUST00000149756.8	8784	14	130244	6	4483	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATATCAATTACATGT	NA	False	NA	NA	False	AATAAA	-13	NA	6287409	6290897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_6287400_6290900
ENSMUSG00000034377.11_15	chr17	+	3757	12	NIC	ENSMUSG00000034377.11	novel	5223	11	NA	NA	0	-2542	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	8.30114997509929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAACCTGTGGCAGTTT	NA	False	NA	NA	False	AATAAA	-8	NA	6157132	6274574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6157272_6187485_6189432_6227103_6227233_6235411_6235574_6248946_6249128_6251974_6252110_6257165_6257333_6263658_6263884_6264909_6265145_6269642_6269788_6272578_6272724_6274426
ENSMUSG00000034377.11_20	chr17	+	8792	14	FSM	ENSMUSG00000034377.11	ENSMUST00000149756.8	8784	14	-26	18	7	-18	multi-exon	FALSE	canonical	0	0	junction_1	8.90581885440388	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTTGCAGATCAAAAAATA	NA	False	NA	NA	False	AATAAA	-1	NA	6157139	6290885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_6157272_6227103_6227233_6235411_6235574_6248946_6249128_6251974_6252110_6257165_6257333_6263658_6263884_6264909_6265145_6269642_6269788_6272578_6272724_6274426_6274521_6279609_6279754_6281986_6284500_6286500
ENSMUSG00000034377.11_3	chr17	+	3155	2	FSM	ENSMUSG00000034377.11	ENSMUST00000146758.8	3147	2	0	-8	0	8	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTTCCTTAGAGCGTATT	NA	False	NA	NA	False	AATAAA	-21	NA	6157132	6175118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_6157272_6172102
ENSMUSG00000034377.11_4	chr17	+	7489	15	NIC	ENSMUSG00000034377.11	novel	9687	14	NA	NA	4	-3270	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	7.83275435695047	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCTTTCCAGCAGTTATA	NA	False	NA	NA	False	ATTAAA	-15	NA	6157136	6287633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6157272_6187485_6189432_6227103_6227233_6235411_6235574_6248946_6249128_6251974_6252110_6257165_6257333_6263658_6263884_6264909_6265145_6269642_6269788_6272578_6272724_6274426_6274521_6279609_6279754_6281986_6284500_6286500
ENSMUSG00000034377.11_6	chr17	+	902	4	NIC	ENSMUSG00000034377.11	novel	3147	2	NA	NA	13	2	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	6.34209919681348	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGAGTTTTCCTTAGAG	NA	False	NA	NA	False	AATAAA	-15	NA	6157145	6175112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6157272_6172102_6172620_6174445_6174524_6174931
ENSMUSG00000034377.11_9	chr17	+	2914	1	NIC	ENSMUSG00000034377.11	novel	8784	14	NA	NA	-8731	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	3713	False	NA	NA	False	NA	NA	NA	6274195	6277109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6274200_6277100
ENSMUSG00000034379.10_0	chr16	+	1759	1	FSM	ENSMUSG00000034379.10	ENSMUST00000042203.10	2739	1	25	955	25	-955	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAATGATAAACTATCCAA	4403	False	NA	NA	False	AATAAA	-20	NA	35861584	35863343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_35861600_35863300
ENSMUSG00000034382.15_0	chr17	+	4596	5	FSM	ENSMUSG00000034382.15	ENSMUST00000150819.3	4866	5	-232	502	-42	-8	multi-exon	FALSE	canonical	2	2	junction_3	3.20156211871642	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGCATCCTGGTTTGTG	9330	False	NA	25	True	AATATA	-15	NA	47747497	47781061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47747875_47757489_47757597_47774878_47774955_47776603_47779779_47780200
ENSMUSG00000034382.15_4	chr17	+	1416	2	ISM	ENSMUSG00000034382.15	ENSMUST00000150819.3	4866	5	31494	502	31494	-8	3prime_fragment	FALSE	canonical	3	11	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGCATCCTGGTTTGTG	NA	False	NA	25	True	AATATA	-15	NA	47779223	47781061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_47779779_47780200
ENSMUSG00000034390.17_0	chr8	+	2789	21	FSM	ENSMUSG00000034390.17	ENSMUST00000166750.9	2408	21	-363	-18	-363	18	multi-exon	TRUE	canonical	3	28	junction_12	7.20052081449669	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	117983439	118186187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_117984141_118103813_118103940_118111696_118111748_118137999_118138162_118142953_118142996_118149583_118149647_118153228_118153310_118156451_118156556_118157932_118158038_118163304_118163659_118172054_118172121_118173809_118173837_118174138_118174188_118175768_118175877_118178898_118179016_118179818_118179960_118180561_118180610_118181638_118181786_118182377_118182484_118183625_118183697_118186067
ENSMUSG00000034390.17_12	chr8	+	2065	20	ISM	ENSMUSG00000034390.17	ENSMUST00000095172.6	2276	21	27920	-10	27920	10	3prime_fragment	FALSE	canonical	3	28	junction_11	7.38419364517709	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	118103828	118186179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_118103940_118111696_118111748_118137999_118138162_118142953_118142996_118149583_118149647_118153228_118153310_118156451_118156556_118157932_118158038_118163304_118163659_118172054_118172121_118173809_118173837_118174138_118174188_118175768_118175877_118178898_118179016_118179818_118179960_118180561_118180610_118181638_118181786_118182377_118182484_118183625_118183697_118186067
ENSMUSG00000034391.13_1	chr18	+	1717	10	FSM	ENSMUSG00000034391.13	ENSMUST00000224467.3	1910	10	192	1	-54	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTGGTGTCTTATT	992	False	NA	25	True	AATAAA	-14	NA	84953098	84999597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUSG00000034391.13_33	chr18	+	1253	7	ISM	ENSMUSG00000034391.13	ENSMUST00000223789.3	1557	10	6993	-95	-129	-1	3prime_fragment	FALSE	canonical	3	754	junction_1	69.3839959132428	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCTGTTTGGTGTCTTAT	NA	False	NA	24	True	AATAAA	-13	NA	84977233	84999596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUSG00000034394.15_2	chr11	+	4017	3	FSM	ENSMUSG00000034394.15	ENSMUST00000040750.4	3798	3	-221	2	78	-2	multi-exon	FALSE	canonical	3	7	junction_1	5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTTCTGGAGTGCATTG	NA	False	NA	NA	False	AATAAA	-16	NA	4216873	4222512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4217120_4218183_4218366_4218923
ENSMUSG00000034394.15_3	chr11	+	2194	1	ISM	ENSMUSG00000034394.15	ENSMUST00000066283.12	4026	4	12763	1	3225	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCTGGAGTGCATTGA	2052	False	NA	NA	False	AATAAA	-17	NA	4220319	4222513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_4220300_4222500
ENSMUSG00000034401.17_0	chr4	+	2401	13	FSM	ENSMUSG00000034401.17	ENSMUST00000038868.14	2466	13	55	10	1	-2	multi-exon	FALSE	canonical	3	90	junction_2	15.2103309190388	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATTTTACCTCTGGTAT	NA	False	NA	10	True	AATAAA	-25	NA	111577235	111686329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663228_111679937_111680030_111685382
ENSMUSG00000034401.17_1	chr4	+	1777	13	NIC	ENSMUSG00000034401.17	novel	2466	13	NA	NA	9	270	combination_of_known_junctions	FALSE	canonical	3	7	junction_4	31.6318887973654	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAGTTGAACCCAGCAT	NA	False	NA	NA	False	TTTAAA	-18	NA	111577215	111685669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625896_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663228_111679937_111680030_111685382
ENSMUSG00000034401.17_3	chr4	+	2321	13	FSM	ENSMUSG00000034401.17	ENSMUST00000084354.4	2239	13	-152	70	-6	-20	multi-exon	FALSE	canonical	3	19	junction_11	28.7691964897643	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAAGAATTATATTG	NA	False	NA	-8	True	AATAAA	-7	NA	111577249	111686311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663180_111679937_111680030_111685382
ENSMUSG00000034403.17_0	chrX	-	2562	2	FSM	ENSMUSG00000034403.17	ENSMUST00000036354.7	2563	2	-1	2	-1	-2	multi-exon	FALSE	canonical	3	84	junction_1	0	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAACAATGGCATCATTT	NA	False	NA	-6	True	ATTAAA	-20	NA	98514299	98509721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_98512207_98514222
ENSMUSG00000034403.17_2	chrX	-	2282	2	FSM	ENSMUSG00000034403.17	ENSMUST00000167246.2	2666	2	38	346	-5	0	multi-exon	FALSE	canonical	3	379	junction_1	0	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAATGGCATCATTTGG	NA	False	NA	-4	True	ATTAAA	-22	NA	98514303	98509719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_98511921_98514222
ENSMUSG00000034403.17_3	chrX	-	1910	1	ISM	ENSMUSG00000034403.17	ENSMUST00000113792.2	3038	3	3252	378	2651	2	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGGCATCATTTGGAT	NA	False	NA	-2	True	ATTAAA	-24	NA	98511627	98509717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_98509700_98511600
ENSMUSG00000034403.17_5	chrX	-	1742	3	FSM	ENSMUSG00000034403.17	ENSMUST00000113790.8	2108	3	-10	376	-5	0	multi-exon	FALSE	canonical	3	92	junction_1	143.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAATGGCATCATTTGG	NA	False	NA	-4	True	ATTAAA	-22	NA	98514303	98509719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_98511189_98511728_98511921_98514222
ENSMUSG00000034412.14_0	chr11	+	1916	9	FSM	ENSMUSG00000034412.14	ENSMUST00000180088.2	1921	9	5	0	5	0	multi-exon	FALSE	canonical	3	291	junction_8	26.2963875846094	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGCTGTGTATAGTTAG	1587	False	NA	21	True	AATAAA	-12	NA	4136826	4165502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162248_4162784_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
ENSMUSG00000034412.14_3	chr11	+	2454	8	NIC	ENSMUSG00000034412.14	novel	1921	9	NA	NA	4	0	intron_retention	FALSE	canonical	3	291	junction_7	26.8639808924097	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGCTGTGTATAGTTAG	1586	False	NA	21	True	AATAAA	-12	NA	4136825	4165502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
ENSMUSG00000034416.19_0	chr8	-	1769	9	ISM	ENSMUSG00000034416.19	ENSMUST00000109093.9	7389	43	65424	-203	7070	203	3prime_fragment	FALSE	canonical	3	6	junction_4	8.3132048573339	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAGAACATTCTCTACG	4493	False	NA	NA	False	AATAAA	-3	NA	117743764	117722214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_117722580_117724274_117724407_117724814_117724917_117726511_117726723_117736308_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556
ENSMUSG00000034416.19_11	chr8	-	1930	5	ISM	ENSMUSG00000034416.19	ENSMUST00000109093.9	7389	43	53668	22965	62	4906	internal_fragment	FALSE	canonical	3	6	junction_4	1.92028643696715	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACACCATGAGCACAGGAT	NA	False	NA	NA	False	NA	NA	NA	117755520	117745382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_117746282_117747778_117747873_117748556_117748762_117750601_117750831_117755017
ENSMUSG00000034416.19_16	chr8	-	2269	9	NIC	ENSMUSG00000034416.19	novel	7389	43	NA	NA	12	4	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	10.3198837202751	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGTTCTTATTTATTT	NA	False	NA	NA	False	TATAAA	-23	NA	117755570	117736057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556_117743743_117747778_117747873_117748556_117748762_117750601_117750831_117755017
ENSMUSG00000034416.19_3	chr8	-	2976	14	ISM	ENSMUSG00000034416.19	ENSMUST00000109093.9	7389	43	53608	-203	2	203	3prime_fragment	FALSE	canonical	3	6	junction_4	7.94731170356426	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAGAACATTCTCTACG	NA	False	NA	NA	False	AATAAA	-3	NA	117755580	117722214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_117722580_117724274_117724407_117724814_117724917_117726511_117726723_117736308_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556_117743743_117746143_117746282_117747778_117747873_117748556_117748762_117750601_117750831_117755017
ENSMUSG00000034416.19_7	chr8	-	1167	4	NIC	ENSMUSG00000034416.19	novel	1716	8	NA	NA	6981	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	9.84321537348893	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGGCATGTTCTTATTT	4404	False	NA	NA	False	TATAAA	-19	NA	117743853	117736061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_117736470_117740602_117740737_117741601_117741930_117743556
ENSMUSG00000034416.19_8	chr8	-	1166	5	ISM	ENSMUSG00000034416.19	ENSMUST00000162080.2	1716	8	7110	0	7110	0	3prime_fragment	FALSE	canonical	3	20	junction_4	5.53962995154008	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGGCATGTTCTTATTT	4533	False	NA	NA	False	TATAAA	-19	NA	117743724	117736061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556
ENSMUSG00000034422.15_0	chr16	-	7429	17	FSM	ENSMUSG00000034422.15	ENSMUST00000042665.9	7417	17	-22	10	-22	-10	multi-exon	FALSE	canonical	1	2	junction_15	4.31883592533914	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAATAAATGTCTCTTGG	NA	False	NA	NA	False	AGTAAA	-40	NA	35691936	35653253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_35655306_35656360_35656536_35659631_35659766_35661091_35661692_35661778_35662001_35664613_35664782_35665097_35665161_35665639_35665790_35666379_35666456_35673101_35673324_35673888_35674129_35676852_35679135_35680799_35681037_35683729_35683964_35685488_35685523_35686518_35686659_35691536
ENSMUSG00000034422.15_1	chr16	-	5161	12	ISM	ENSMUSG00000034422.15	ENSMUST00000042665.9	7417	17	14003	10	13841	-10	3prime_fragment	FALSE	canonical	3	8	junction_10	2.69679944985297	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAATAAATGTCTCTTGG	NA	False	NA	NA	False	AGTAAA	-40	NA	35677911	35653253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_35655306_35656360_35656536_35659631_35659766_35661091_35661692_35661778_35662001_35664613_35664782_35665097_35665161_35665639_35665790_35666379_35666456_35673101_35673324_35673888_35674129_35676852
ENSMUSG00000034422.15_2	chr16	-	7308	16	NIC	ENSMUSG00000034422.15	novel	7417	17	NA	NA	28	-6	intron_retention	FALSE	canonical	1	2	junction_14	4.39696865275764	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGTCTCTTGGTGGA	NA	False	NA	NA	False	AGTAAA	-44	NA	35691724	35653249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_35655306_35656360_35656536_35659631_35659766_35661091_35662001_35664613_35664782_35665097_35665161_35665639_35665790_35666379_35666456_35673101_35673324_35673888_35674129_35676852_35679135_35680799_35681037_35683729_35683964_35685488_35685523_35686518_35686659_35691536
ENSMUSG00000034422.15_5	chr16	-	2746	1	FSM	ENSMUSG00000116549.2	ENSMUST00000231601.2	232	1	-2391	-123	-2391	123	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGTTATGAAG	NA	False	NA	NA	False	AATAAA	-4	NA	35655022	35652276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_35652300_35655000
ENSMUSG00000034422.15_6	chr16	-	6822	14	ISM	ENSMUSG00000034422.15	ENSMUST00000042665.9	7417	17	7984	10	7822	-10	3prime_fragment	FALSE	canonical	2	8	junction_10	3.02259733913669	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAATAAATGTCTCTTGG	NA	False	NA	NA	False	AGTAAA	-40	NA	35683930	35653253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_35655306_35656360_35656536_35659631_35659766_35661091_35661692_35661778_35662001_35664613_35664782_35665097_35665161_35665639_35665790_35666379_35666456_35673101_35673324_35673888_35674129_35676852_35679135_35680799_35681037_35683729
ENSMUSG00000034422.15_7	chr16	-	2804	3	ISM	ENSMUSG00000034422.15	ENSMUST00000042665.9	7417	17	31700	16	31538	-16	3prime_fragment	FALSE	canonical	3	12	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATTACATAATAAATGTC	NA	False	NA	NA	False	AGTAAA	-34	NA	35660214	35653259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_35655306_35656360_35656536_35659631
ENSMUSG00000034422.15_8	chr16	-	3225	6	ISM	ENSMUSG00000034422.15	ENSMUST00000042665.9	7417	17	27263	6	27101	-6	3prime_fragment	FALSE	canonical	3	9	junction_4	2.33238075793812	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGTCTCTTGGTGGA	NA	False	NA	NA	False	AGTAAA	-44	NA	35664651	35653249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_35655306_35656360_35656536_35659631_35659766_35661091_35661692_35661778_35662001_35664613
ENSMUSG00000034424.6_0	chr8	-	1215	5	FSM	ENSMUSG00000034424.6	ENSMUST00000040484.6	1443	5	65	163	65	-163	multi-exon	FALSE	canonical	3	1952	junction_3	87.9982244139051	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATTGTGATTTTTATT	NA	False	NA	-10	True	AATAAA	-15	NA	117720211	117708711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_117709466_117710546_117710679_117714051_117714116_117715862_117715943_117720026
ENSMUSG00000034424.6_7	chr8	-	1135	4	NIC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	65	-163	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	974.020647739165	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATTGTGATTTTTATT	NA	False	NA	-10	True	AATAAA	-15	NA	117720211	117708711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_117709466_117710546_117710679_117714051_117714116_117720026
ENSMUSG00000034427.18_17	chr11	+	2090	15	ISM	ENSMUSG00000034427.18	ENSMUST00000222123.2	5154	43	9735	4	-332	0	3prime_fragment	FALSE	canonical	2	5	junction_11	3.99553322027057	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATTGTGTGTGAGCAT	1838	False	NA	NA	False	AGTAAA	-10	NA	115778094	115783414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115778534_115778692_115778757_115778847_115778921_115779237_115779315_115780691_115780763_115780847_115780964_115781062_115781158_115781277_115781356_115781440_115781538_115781648_115781795_115781930_115782050_115782326_115782461_115782630_115782765_115782873_115783015_115783108
ENSMUSG00000034427.18_4	chr11	+	1993	13	ISM	ENSMUSG00000034427.18	ENSMUST00000040703.12	2825	21	2709	0	2709	0	3prime_fragment	TRUE	canonical	1	6	junction_2	2.59272486435067	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGTGTCACTCCTCTT	7148	False	NA	NA	False	AATAAA	-19	NA	115773959	115778271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115774111_115774242_115774345_115774432_115774734_115774823_115774912_115775005_115775232_115775901_115776015_115776219_115776280_115776846_115776923_115777016_115777136_115777216_115777336_115777409_115777552_115777687_115777800_115777887
ENSMUSG00000034427.18_5	chr11	+	3232	26	ISM	ENSMUSG00000034427.18	ENSMUST00000222123.2	5154	43	6131	7	-2771	-3	3prime_fragment	FALSE	canonical	1	5	junction_22	3.4213447648549	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAGATTGTGTGTGAG	7679	False	NA	NA	False	AGTAAA	-7	NA	115774490	115783411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115774734_115774823_115774912_115775005_115775232_115775901_115776015_115776219_115776280_115776846_115776923_115777016_115777136_115777216_115777336_115777409_115777552_115777687_115777800_115777887_115778031_115778390_115778534_115778692_115778757_115778847_115778921_115779237_115779315_115780691_115780763_115780847_115780964_115781062_115781158_115781277_115781356_115781440_115781538_115781648_115781795_115781930_115782050_115782326_115782461_115782630_115782765_115782873_115783015_115783108
ENSMUSG00000034427.18_6	chr11	+	1702	11	ISM	ENSMUSG00000034427.18	ENSMUST00000040703.12	2825	21	3220	0	-2791	0	3prime_fragment	FALSE	canonical	1	8	junction_3	2.35796522451032	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGTGTCACTCCTCTT	7659	False	NA	NA	False	AATAAA	-19	NA	115774470	115778271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115774734_115774823_115774912_115775005_115775232_115775901_115776015_115776219_115776280_115776846_115776923_115777016_115777136_115777216_115777336_115777409_115777552_115777687_115777800_115777887
ENSMUSG00000034429.16_0	chr15	+	1624	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109966.8	1803	4	172	7	-12	-2	multi-exon	FALSE	canonical	3	24	junction_3	7.71722460186015	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATGGGAGAAGCCTGTTC	NA	False	NA	4	True	AATAAA	-9	NA	75841143	75847591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_75841254_75844930_75845058_75845390_75845505_75846318
ENSMUSG00000034429.16_1	chr15	+	1598	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109967.10	1703	4	98	7	-30	-5	multi-exon	FALSE	canonical	1	1	junction_1	16.779617264871	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCAATGGGAGAAGCCTG	NA	False	NA	1	True	AATAAA	-6	NA	75841125	75847588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_75841254_75844971_75845058_75845390_75845505_75846318
ENSMUSG00000034429.16_5	chr15	+	5118	3	FSM	ENSMUSG00000034429.16	ENSMUST00000229652.2	2204	3	-2909	-5	168	-5	multi-exon	FALSE	canonical	3	24	junction_2	9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCAATGGGAGAAGCCTG	NA	False	NA	1	True	AATAAA	-6	NA	75841323	75847588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_75845058_75845390_75845505_75846318
ENSMUSG00000034429.16_6	chr15	+	1069	1	ISM	ENSMUSG00000034429.16	ENSMUST00000109966.8	1803	4	5553	5	1893	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGGAGAAGCCTGTTCTT	4416	False	NA	6	True	AATAAA	-11	NA	75846524	75847593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_75846500_75847600
ENSMUSG00000034430.17_0	chr6	+	4030	10	FSM	ENSMUSG00000034430.17	ENSMUST00000075117.10	4126	10	90	6	-24	-6	multi-exon	FALSE	canonical	3	55	junction_8	20.7762922820135	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAAGCTTTTGCGCTGCT	NA	False	NA	6	True	AATAAA	-19	NA	90346565	90380466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_90347551_90349523_90349677_90349768_90349848_90350692_90350824_90355765_90355937_90358813_90359503_90361149_90361235_90375743_90375914_90377763_90377866_90379001
ENSMUSG00000034430.17_1	chr6	+	2779	6	FSM	ENSMUSG00000034430.17	ENSMUST00000113539.8	4864	6	93	1992	-23	-11	multi-exon	FALSE	canonical	3	93	junction_4	6.06630035524124	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTAAAGATTCCTAGAGA	NA	False	NA	NA	False	NA	NA	NA	90346566	90360074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_90347551_90349523_90349677_90349768_90349848_90350692_90350824_90355765_90355937_90358813
ENSMUSG00000034430.17_7	chr6	+	4065	11	NNC	ENSMUSG00000034430.17	novel	4126	10	NA	NA	-8	-9	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	37.2210961687052	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAAAAGCTTTTGCGCT	NA	False	NA	3	True	AATAAA	-16	NA	90346581	90380463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_90347551_90349523_90349677_90349768_90349848_90350692_90350824_90355765_90355937_90358813_90359503_90361149_90361235_90375743_90375914_90376053_90376108_90377763_90377866_90379001
ENSMUSG00000034432.12_0	chr1	+	1552	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	514	221	-4	-4	multi-exon	FALSE	canonical	3	708	junction_7	24.8185250100297	690	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAAAGCTGGCTCTAGAA	NA	False	NA	21	True	AATAAA	-26	NA	90531216	90540842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
ENSMUSG00000034435.7_0	chr12	-	3026	1	FSM	ENSMUSG00000034435.7	ENSMUST00000042975.7	2991	1	-43	8	-43	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGTTATCACATTACTT	NA	False	NA	NA	False	AATAAA	-16	NA	73593209	73590183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_73590200_73593200
ENSMUSG00000034437.9_0	chr3	-	912	1	FSM	ENSMUSG00000034437.9	ENSMUST00000075650.7	492	1	-115	-305	-115	305	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	116355190	116354278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_116354300_116355200
ENSMUSG00000034442.12_11	chr12	-	2431	5	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	26	81	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	37.6056844107377	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTGGATATTGTATAGAC	NA	False	NA	-14	True	AGTAAA	-14	NA	73333457	73327173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73332677
ENSMUSG00000034442.12_12	chr12	-	1001	3	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	1432	81	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	46.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTGGATATTGTATAGAC	NA	False	NA	-14	True	AGTAAA	-14	NA	73332051	73327173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_73327407_73329385_73329511_73331408
ENSMUSG00000034442.12_21	chr12	-	1756	4	ISM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	-31	713	-30	-243	5prime_fragment	FALSE	canonical	3	66	junction_1	21.2759645296439	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAATAAAAACAAATCCT	NA	False	NA	NA	False	AATAAA	-25	NA	73333514	73327497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_73328431_73329385_73329511_73331408_73332050_73333457
ENSMUSG00000034442.12_27	chr12	-	3047	3	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-35	88	intron_retention	FALSE	canonical	3	70	junction_2	21.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGTATAGACTGATTTT	NA	False	NA	-7	True	AGTAAA	-21	NA	73333519	73327166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_73329511_73331408_73332050_73333457
ENSMUSG00000034442.12_4	chr12	-	1683	5	FSM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	-8	391	-7	79	multi-exon	FALSE	canonical	3	66	junction_2	19.266226926931	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACTTGGATATTGTATAG	NA	False	NA	-16	True	AGTAAA	-12	NA	73333491	73327175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73333457
ENSMUSG00000034442.12_7	chr12	-	2644	4	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-7	85	intron_retention	FALSE	canonical	3	70	junction_3	17.6823829464998	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATATTGTATAGACTGAT	NA	False	NA	-10	True	AGTAAA	-18	NA	73333491	73327169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_73327407_73327778_73329511_73331408_73332050_73333457
ENSMUSG00000034442.12_8	chr12	-	1659	4	ISM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	1432	383	1432	87	3prime_fragment	FALSE	canonical	3	66	junction_2	19.4307888557196	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTGTATAGACTGATTT	NA	False	NA	-8	True	AGTAAA	-20	NA	73332051	73327167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408
ENSMUSG00000034442.12_9	chr12	-	1028	4	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-3	80	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	38.0029238641216	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTGGATATTGTATAGA	NA	False	NA	-15	True	AGTAAA	-13	NA	73333487	73327174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_73327407_73329385_73329511_73331408_73332050_73333457
ENSMUSG00000034445.9_0	chr19	+	2844	8	FSM	ENSMUSG00000034445.9	ENSMUST00000237814.2	3130	8	283	3	1	-1	multi-exon	FALSE	canonical	3	46	junction_1	19.4768308196049	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGAGGTCTCTTTTGTTC	NA	False	NA	11	True	ATTAAA	-14	NA	10554818	10567190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ENSMUSG00000034445.9_1	chr19	+	2747	7	FSM	ENSMUSG00000034445.9	ENSMUST00000168445.2	1474	7	1	-1274	1	0	multi-exon	FALSE	canonical	3	16	junction_1	29.6516816086748	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCAGAGGTCTCTTTT	NA	False	NA	7	True	ATTAAA	-10	NA	10554818	10567186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10555448_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ENSMUSG00000034445.9_4	chr19	+	2671	9	FSM	ENSMUSG00000034445.9	ENSMUST00000237581.2	2634	9	-37	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	28.8693176226942	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCAGAGGTCTCTTTT	NA	False	NA	7	True	ATTAAA	-10	NA	10554817	10567186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10554928_10555097_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ENSMUSG00000034445.9_5	chr19	+	2227	7	NIC	ENSMUSG00000034445.9	novel	2634	9	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	29.2845237853262	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCAGAGGTCTCTTTT	NA	False	NA	7	True	ATTAAA	-10	NA	10554818	10567186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10554928_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ENSMUSG00000034445.9_6	chr19	+	2324	8	NIC	ENSMUSG00000034445.9	novel	2634	9	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	27.7319531315376	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGAGGTCTCTTTTGTTC	NA	False	NA	11	True	ATTAAA	-14	NA	10554818	10567190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10554928_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ENSMUSG00000034449.8_1	chr11	-	1436	7	FSM	ENSMUSG00000034449.8	ENSMUST00000047560.8	1254	7	-53	-129	-23	129	multi-exon	FALSE	canonical	3	39	junction_6	7.19760762722973	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTACCTTCAGAAGTATC	NA	False	NA	NA	False	ATTAAA	-18	NA	84719843	84711552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716404_84719576
ENSMUSG00000034449.8_2	chr11	-	1374	7	NIC	ENSMUSG00000034449.8	novel	1254	7	NA	NA	-17	129	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	15.7585955380971	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTACCTTCAGAAGTATC	NA	False	NA	NA	False	ATTAAA	-18	NA	84719837	84711552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716348_84719576
ENSMUSG00000034449.8_7	chr11	-	1981	6	NIC	ENSMUSG00000034449.8	novel	1254	7	NA	NA	-11	133	intron_retention	FALSE	canonical	3	39	junction_5	7.61577310586391	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTCAGAAGTATCTTTC	NA	False	NA	NA	False	ATTAAA	-22	NA	84719831	84711548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_84712128_84712228_84712295_84712490_84713267_84713897_84713993_84716193_84716404_84719576
ENSMUSG00000034449.8_8	chr11	-	1925	6	NIC	ENSMUSG00000034449.8	novel	1254	7	NA	NA	-15	129	intron_retention	FALSE	canonical	3	14	junction_5	17.2626765016321	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTACCTTCAGAAGTATC	NA	False	NA	NA	False	ATTAAA	-18	NA	84719835	84711552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_84712128_84712228_84712295_84712490_84713267_84713897_84713993_84716193_84716348_84719576
ENSMUSG00000034450.9_0	chr14	-	2266	12	FSM	ENSMUSG00000034450.9	ENSMUST00000059970.9	2263	12	-10	7	-10	-7	multi-exon	FALSE	canonical	2	4	junction_5	1.97086212624353	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATATCTTTTTGCCCTT	NA	False	NA	NA	False	ATTAAA	-9	NA	66246666	66224241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_66225144_66225630_66225722_66227827_66227993_66228478_66228629_66234272_66234350_66235008_66235117_66237282_66237469_66240039_66240131_66241530_66241626_66243285_66243412_66245487_66245590_66246493
ENSMUSG00000034452.8_1	chr9	-	3137	7	ISM	ENSMUSG00000034452.8	ENSMUST00000037798.8	5213	10	15538	17	15538	-17	3prime_fragment	TRUE	canonical	2	2	junction_6	2.21735578260835	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAAACTGTGGGTCCAC	NA	False	NA	NA	False	ATTAAA	-5	NA	64843351	64830159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_64831953_64833450_64833618_64834444_64834535_64835239_64835996_64838461_64838554_64839448_64839533_64843196
ENSMUSG00000034453.9_0	chr10	+	4880	28	FSM	ENSMUSG00000034453.9	ENSMUST00000077175.7	4975	28	86	9	85	-9	multi-exon	FALSE	canonical	3	154	junction_10	22.7726281441689	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACGGTACTCAGTCTGAG	NA	False	NA	13	True	NA	NA	NA	84458241	84563033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229_84516329_84520040_84520169_84528660_84528871_84531418_84531578_84532812_84532931_84535262_84535406_84549492_84549597_84550108_84550276_84554273_84554388_84556207_84556382_84561514
ENSMUSG00000034453.9_47	chr10	+	1218	1	ISM	ENSMUSG00000034453.9	ENSMUST00000077175.7	4975	28	103662	7	86858	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGTACTCAGTCTGAGAG	5356	False	NA	15	True	NA	NA	NA	84561817	84563035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_84561800_84563000
ENSMUSG00000034457.11_1	chrX	-	2810	1	ISM	ENSMUSG00000034457.11	ENSMUST00000037353.10	4752	8	40563	4	40497	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACAAATGCCTTGTTTATT	NA	False	NA	-27	True	AATAAA	-10	NA	96380259	96377449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_96377400_96380300
ENSMUSG00000034457.11_2	chrX	-	6068	7	FSM	ENSMUSG00000034457.11	ENSMUST00000126283.8	2153	7	32	-3947	-12	-4	multi-exon	FALSE	canonical	3	97	junction_5	9.18331820930394	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACAAATGCCTTGTTTATT	NA	False	NA	-27	True	AATAAA	-10	NA	96420790	96377449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
ENSMUSG00000034457.11_4	chrX	-	4714	8	FSM	ENSMUSG00000034457.11	ENSMUST00000037353.10	4752	8	36	2	-8	-2	multi-exon	FALSE	canonical	3	19	junction_1	34.3130843134516	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGCCTTGTTTATTCC	NA	False	NA	-25	True	AATAAA	-12	NA	96420786	96377447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_96381057_96382408_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
ENSMUSG00000034457.11_6	chrX	-	4758	8	FSM	ENSMUSG00000034457.11	ENSMUST00000113832.2	1433	8	-29	-3296	-7	-2	multi-exon	FALSE	canonical	3	11	junction_7	44.9743691178767	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGCCTTGTTTATTCC	NA	False	NA	-25	True	AATAAA	-12	NA	96420785	96377447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_96381057_96382408_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414907_96420706
ENSMUSG00000034457.11_8	chrX	-	6111	7	NIC	ENSMUSG00000034457.11	novel	1433	8	NA	NA	-8	-2	intron_retention	FALSE	canonical	3	11	junction_6	38.9419083022676	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGCCTTGTTTATTCC	NA	False	NA	-25	True	AATAAA	-12	NA	96420786	96377447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414907_96420706
ENSMUSG00000034460.10_0	chr12	-	2854	1	ISM	ENSMUSG00000034460.10	ENSMUST00000043208.8	6402	3	10958	5	10958	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATACTTTGTGTTGAAGAA	NA	False	NA	-6	True	AATAAA	-13	NA	73149241	73146387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_73146400_73149200
ENSMUSG00000034460.10_1	chr12	-	6208	3	FSM	ENSMUSG00000034460.10	ENSMUST00000043208.8	6402	3	187	7	187	-7	multi-exon	FALSE	canonical	3	64	junction_1	15	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATACTTTGTGTTGAAG	NA	False	NA	-8	True	AATAAA	-11	NA	73160012	73146389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_73151013_73155434_73156124_73159116
ENSMUSG00000034460.10_2	chr12	-	6188	4	NIC	ENSMUSG00000034460.10	novel	6402	3	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	12.2836838484589	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATACTTTGTGTTGAAG	NA	False	NA	-8	True	AATAAA	-11	NA	73160198	73146389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_73151013_73155434_73156124_73159116_73159932_73160137
ENSMUSG00000034460.10_3	chr12	-	4992	2	ISM	ENSMUSG00000034460.10	ENSMUST00000043208.8	6402	3	4396	7	4396	-7	3prime_fragment	FALSE	canonical	3	64	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATACTTTGTGTTGAAG	NA	False	NA	-8	True	AATAAA	-11	NA	73155803	73146389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_73151013_73155434
ENSMUSG00000034460.10_7	chr12	-	1988	3	FSM	ENSMUSG00000034460.10	ENSMUST00000175693.3	6817	3	32	4797	1	-4797	multi-exon	FALSE	canonical	3	77	junction_2	8.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTAGTCTTGCTTGCATC	NA	False	NA	NA	False	AATAAA	-12	NA	73160198	73155011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_73156124_73159116_73159932_73160137
ENSMUSG00000034462.10_1	chr5	+	5103	15	FSM	ENSMUSG00000034462.10	ENSMUST00000086831.4	5219	15	112	4	-8	-4	multi-exon	FALSE	canonical	3	58	junction_14	9.78049913170622	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTACCATGGTGTTAAAAAC	NA	False	NA	5	True	AATAAA	-11	NA	104607427	104653681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_104608092_104614748_104614863_104624908_104625043_104626656_104626908_104628015_104628241_104630890_104631120_104634512_104634681_104637098_104637281_104638509_104638631_104642758_104642858_104646306_104646429_104646623_104646742_104647035_104647200_104650157_104650306_104651317
ENSMUSG00000034462.10_16	chr5	+	4456	14	ISM	ENSMUSG00000034462.10	ENSMUST00000086831.4	5219	15	7419	1	7299	-1	3prime_fragment	FALSE	canonical	3	58	junction_13	9.50614874201564	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATGGTGTTAAAAACACG	5321	False	NA	8	True	AATAAA	-14	NA	104614734	104653684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_104614863_104624908_104625043_104626656_104626908_104628015_104628241_104630890_104631120_104634512_104634681_104637098_104637281_104638509_104638631_104642758_104642858_104646306_104646429_104646623_104646742_104647035_104647200_104650157_104650306_104651317
ENSMUSG00000034462.10_2	chr5	+	4931	14	NIC	ENSMUSG00000034462.10	novel	5219	15	NA	NA	-6	-6	combination_of_known_splicesites	FALSE	canonical	3	7	junction_6	20.2464110341392	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGTACCATGGTGTTAAAA	NA	False	NA	3	True	AATAAA	-9	NA	104607429	104653679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_104608092_104614748_104614863_104624908_104625043_104626656_104626908_104628015_104628241_104630890_104631120_104637098_104637281_104638509_104638631_104642758_104642858_104646306_104646429_104646623_104646742_104647035_104647200_104650157_104650306_104651317
ENSMUSG00000034462.10_25	chr5	+	5175	6	ISM	ENSMUSG00000034462.10	ENSMUST00000086831.4	5219	15	33286	1	-35	-1	3prime_fragment	FALSE	canonical	3	58	junction_5	9.20869154657707	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATGGTGTTAAAAACACG	NA	False	NA	8	True	AATAAA	-14	NA	104640601	104653684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_104642858_104646306_104646429_104646623_104646742_104647035_104647200_104650157_104650306_104651317
ENSMUSG00000034462.10_30	chr5	+	1501	1	ISM	ENSMUSG00000034462.10	ENSMUST00000086831.4	5219	15	44868	1	11547	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATGGTGTTAAAAACACG	NA	False	NA	8	True	AATAAA	-14	NA	104652183	104653684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_104652200_104653700
ENSMUSG00000034462.10_31	chr5	+	2493	2	ISM	ENSMUSG00000034462.10	ENSMUST00000086831.4	5219	15	42859	6	9538	-6	3prime_fragment	FALSE	canonical	3	58	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGTACCATGGTGTTAAAA	NA	False	NA	3	True	AATAAA	-9	NA	104650174	104653679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_104650306_104651317
ENSMUSG00000034462.10_5	chr5	+	2182	6	ISM	ENSMUSG00000034462.10	ENSMUST00000130931.2	2282	9	-12	6506	-12	-6506	5prime_fragment	FALSE	canonical	3	61	junction_1	8.79545337091841	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACCCAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	104607423	104631680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_104608092_104614748_104614863_104624908_104625043_104626656_104626908_104628015_104628241_104630890
ENSMUSG00000034462.10_7	chr5	+	1296	1	NIC	ENSMUSG00000034462.10	novel	5219	15	NA	NA	-15	-29470	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCCCCCCCCCCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	104607420	104608716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_104607400_104608700
ENSMUSG00000034471.13_0	chr11	-	4922	20	FSM	ENSMUSG00000034471.13	ENSMUST00000041684.11	4929	20	1	6	1	-6	multi-exon	FALSE	canonical	3	37	junction_9	9.14911860187284	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGACTGGGCTGTGTTTG	4121	False	NA	-7	True	AATGAA	-12	NA	115704455	115690014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115690904_115691185_115691409_115691491_115692968_115693106_115693246_115693373_115693476_115693554_115693666_115693824_115693914_115694037_115694099_115694183_115694306_115694407_115694670_115695301_115695397_115695524_115695634_115695906_115696016_115697129_115697261_115697359_115697456_115697544_115697691_115698089_115698188_115698664_115698717_115702712_115703209_115704339
ENSMUSG00000034471.13_3	chr11	-	4657	19	ISM	ENSMUSG00000034471.13	ENSMUST00000041684.11	4929	20	1592	-189	1592	189	3prime_fragment	FALSE	canonical	3	37	junction_9	8.73212459828649	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTCACTCCCCCAAAGGC	5712	False	NA	NA	False	TATAAA	-8	NA	115702864	115689819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115690904_115691185_115691409_115691491_115692968_115693106_115693246_115693373_115693476_115693554_115693666_115693824_115693914_115694037_115694099_115694183_115694306_115694407_115694670_115695301_115695397_115695524_115695634_115695906_115696016_115697129_115697261_115697359_115697456_115697544_115697691_115698089_115698188_115698664_115698717_115702712
ENSMUSG00000034471.13_6	chr11	-	1771	3	ISM	ENSMUSG00000034471.13	ENSMUST00000041684.11	4929	20	12306	6	-443	-6	3prime_fragment	FALSE	canonical	3	63	junction_2	1	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGACTGGGCTGTGTTTG	7337	False	NA	-7	True	AATGAA	-12	NA	115692150	115690014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115690904_115691185_115691409_115691491
ENSMUSG00000034472.14_3	chr8	+	3476	4	NNC	ENSMUSG00000034472.14	novel	2810	3	NA	NA	-712	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7.31816613336672	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGATGCTTACTTCCTG	NA	False	NA	9	True	ATTAAA	-19	NA	75939859	75950739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_75940707_75945163_75945444_75948346_75949349_75949392
ENSMUSG00000034472.14_5	chr8	+	3472	4	NNC	ENSMUSG00000034472.14	novel	2810	3	NA	NA	-730	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	7.31816613336672	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGCCTTTGATGCTTA	NA	False	NA	2	True	ATTAAA	-12	NA	75939841	75950732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_75940707_75945163_75945444_75948346_75949362_75949420
ENSMUSG00000034473.15_0	chr16	-	1644	7	FSM	ENSMUSG00000034473.15	ENSMUST00000043521.5	3992	7	66	2282	0	651	multi-exon	FALSE	canonical	3	72	junction_4	6.0736223860962	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATTGTGGTCTTCCAAAT	NA	False	NA	-25	True	AATACA	-12	NA	35184222	35133782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_35134658_35139173_35139240_35149867_35149984_35167968_35168164_35169200_35169365_35181930_35182130_35184193
ENSMUSG00000034473.15_1	chr16	-	1325	5	NIC	ENSMUSG00000034473.15	novel	3992	7	NA	NA	32	657	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	36.3077126792642	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTCTTCCAAATTCTTAT	NA	False	NA	-19	True	AATACA	-18	NA	35184256	35133776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_35134658_35139173_35139240_35149867_35149984_35181930_35182130_35184193
ENSMUSG00000034473.15_20	chr16	-	1941	7	NIC	ENSMUSG00000034473.15	novel	3992	7	NA	NA	17	653	combination_of_known_junctions	FALSE	canonical	1	4	junction_6	30.4380062129934	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGGTCTTCCAAATTC	NA	False	NA	-23	True	AATACA	-14	NA	35184168	35133780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_35134658_35139173_35139240_35149867_35149984_35167968_35168164_35169200_35169365_35181930_35182130_35183844
ENSMUSG00000034473.15_3	chr16	-	1615	6	ISM	ENSMUSG00000034473.15	ENSMUST00000043521.5	3992	7	2161	2280	4	653	3prime_fragment	FALSE	canonical	3	72	junction_4	6.30555310817378	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGGTCTTCCAAATTC	NA	False	NA	-23	True	AATACA	-14	NA	35182127	35133780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_35134658_35139173_35139240_35149867_35149984_35167968_35168164_35169200_35169365_35181930
ENSMUSG00000034473.15_9	chr16	-	1570	6	NIC	ENSMUSG00000034473.15	novel	3992	7	NA	NA	1	649	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	31.931175988366	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTATTGTGGTCTTCCAA	NA	False	NA	-27	True	AATACA	-10	NA	35184216	35133784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_35134658_35149867_35149984_35167968_35168164_35169200_35169365_35181930_35182130_35184193
ENSMUSG00000034480.19_1	chrX	+	8372	27	NIC	ENSMUSG00000034480.19	novel	8439	27	NA	NA	-2	-3	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_23	29.6483333197509	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATCTTCAGTCTCTGA	NA	False	NA	NA	False	AATAAA	-13	NA	128650542	129366577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_128650866_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684_129079812_129159827_129159991_129190602_129190739_129228714_129228811_129361619
ENSMUSG00000034480.19_16	chrX	+	4785	24	NIC	ENSMUSG00000034480.19	novel	4480	23	NA	NA	-16	310	combination_of_known_junctions	FALSE	canonical	3	79	junction_22	13.9859502820869	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAATTATTGTACAAATTA	NA	False	NA	NA	False	AATAAA	-10	NA	128650528	129081530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_128650866_128702143_128702177_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684
ENSMUSG00000034480.19_2	chrX	+	8390	27	FSM	ENSMUSG00000034480.19	ENSMUST00000167619.9	8439	27	46	3	-8	-3	multi-exon	FALSE	non_canonical	0	0	junction_23	27.9511672650587	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATCTTCAGTCTCTGA	NA	False	NA	NA	False	AATAAA	-13	NA	128650536	129366577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_128650866_128702143_128702177_128704761_128704939_128721987_128722093_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684_129079812_129159827_129159991_129190602_129190739_129228714_129228811_129361619
ENSMUSG00000034480.19_46	chrX	+	3253	1	ISM	ENSMUSG00000034480.19	ENSMUST00000167619.9	8439	27	712834	3	490043	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATCTTCAGTCTCTGA	6403	False	NA	NA	False	AATAAA	-13	NA	129363324	129366577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_129363300_129366600
ENSMUSG00000034480.19_5	chrX	+	8407	28	NIC	ENSMUSG00000034480.19	novel	8439	27	NA	NA	-4	-3	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_24	24.3627140962256	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATCTTCAGTCTCTGA	NA	False	NA	NA	False	AATAAA	-13	NA	128650540	129366577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_128650866_128702143_128702177_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684_129079812_129159827_129159991_129190602_129190739_129228714_129228811_129361619
ENSMUSG00000034480.19_7	chrX	+	3164	19	NIC	ENSMUSG00000034480.19	novel	3742	27	NA	NA	25	-2	combination_of_known_junctions	FALSE	canonical	1	3	junction_18	26.5271814941711	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTGCTGCACACTTTGT	NA	False	NA	NA	False	NA	NA	NA	128650515	128943277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_128650866_128702143_128702177_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128942396
ENSMUSG00000034482.3_0	chr17	+	882	3	FSM	ENSMUSG00000034482.3	ENSMUST00000037849.3	509	3	-197	-176	-197	176	multi-exon	TRUE	canonical	2	3	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTTTGTCGTCTCCTC	6514	False	NA	NA	False	AATAAA	-10	NA	35327057	35331143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35327397_35329642_35329808_35330765
ENSMUSG00000034484.9_0	chr18	+	1993	15	FSM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	39	35	-4	-35	multi-exon	FALSE	canonical	0	0	junction_13	254.699312515598	884	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAATATTAGTAATAAATT	NA	False	NA	3	True	AATAAA	-14	NA	53309426	53353902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
ENSMUSG00000034485.11_2	chr9	+	4464	19	FSM	ENSMUSG00000034485.11	ENSMUST00000214354.2	4417	19	-47	0	-47	0	multi-exon	FALSE	canonical	3	92	junction_11	29.0464187886294	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAATTTTACTTTTCTGA	NA	False	NA	17	True	AATAAA	-18	NA	60701776	60787641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_60701975_60748121_60748256_60753274_60753364_60755903_60755969_60756726_60756785_60757411_60757483_60757582_60757690_60761597_60761780_60763479_60763518_60766421_60766500_60768333_60768442_60770672_60770706_60770881_60770981_60773646_60773684_60774713_60774767_60776856_60779566_60781314_60781468_60783643_60783710_60787455
ENSMUSG00000034485.11_23	chr9	+	2249	4	ISM	ENSMUSG00000034485.11	ENSMUST00000214997.2	4493	7	8025	5	4294	-1	3prime_fragment	FALSE	canonical	3	182	junction_1	5.8878405775519	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGAATTTTACTTTTCTG	NA	False	NA	16	True	AATAAA	-17	NA	60777720	60787640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_60779566_60781314_60781468_60783643_60783710_60787455
ENSMUSG00000034485.11_3	chr9	+	4471	19	FSM	ENSMUSG00000034485.11	ENSMUST00000050183.7	4428	19	-54	11	-48	0	multi-exon	FALSE	canonical	3	41	junction_8	35.7857134056402	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAATTTTACTTTTCTGA	NA	False	NA	17	True	AATAAA	-18	NA	60701775	60787641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_60701975_60748121_60748256_60753274_60753364_60755903_60755969_60756726_60756785_60757411_60757483_60757582_60757690_60761597_60761786_60763479_60763518_60766421_60766500_60768333_60768442_60770672_60770706_60770881_60770981_60773646_60773684_60774713_60774767_60776856_60779566_60781314_60781468_60783643_60783710_60787455
ENSMUSG00000034486.9_0	chr1	-	2141	2	FSM	ENSMUSG00000034486.9	ENSMUST00000036954.9	2135	2	-28	22	-28	-12	multi-exon	FALSE	canonical	3	46	junction_1	0	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGGCAAGGAAAA	NA	False	NA	NA	False	TTTAAA	-23	NA	89858929	89855699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_89856866_89857954
ENSMUSG00000034487.5_0	chr9	+	3515	8	FSM	ENSMUSG00000034487.5	ENSMUST00000037853.5	3642	8	21	106	21	-106	multi-exon	FALSE	canonical	3	69	junction_3	8.89622712968015	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAATAAGAAAGGGAACTC	9293	False	NA	NA	False	AATAAA	-10	NA	53295345	53313061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_53295587_53299679_53299878_53301734_53302022_53303214_53303432_53305235_53305433_53307143_53307339_53309219_53309325_53310986
ENSMUSG00000034487.5_13	chr9	+	3224	7	ISM	ENSMUSG00000034487.5	ENSMUST00000037853.5	3642	8	4406	105	-2186	-105	3prime_fragment	FALSE	canonical	3	69	junction_2	9.59890039998795	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATAAGAAAGGGAACTCC	NA	False	NA	NA	False	AATAAA	-11	NA	53299730	53313062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_53299878_53301734_53302022_53303214_53303432_53305235_53305433_53307143_53307339_53309219_53309325_53310986
ENSMUSG00000034487.5_16	chr9	+	1804	1	ISM	ENSMUSG00000034487.5	ENSMUST00000037853.5	3642	8	15927	112	9335	-112	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTTTTATAATAAGAAAGG	9666	False	NA	NA	False	AATAAA	-4	NA	53311251	53313055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_53311300_53313100
ENSMUSG00000034501.8_0	chr12	+	1017	2	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	-9	37894	-9	-37894	5prime_fragment	FALSE	canonical	3	96	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAACTATTGGGAGAGTT	NA	False	NA	NA	False	ATTAAA	-8	NA	72583147	72588999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_72583314_72588148
ENSMUSG00000034501.8_1	chr12	+	4298	11	FSM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	-4	6	-4	-6	multi-exon	FALSE	canonical	2	9	junction_2	24.633513756669	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAATTTTGTTCTTTGTG	NA	False	NA	NA	False	AATAAA	-10	NA	72583152	72626887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_72583314_72588148_72588892_72602210_72602391_72602617_72603133_72603356_72603458_72603574_72603695_72613670_72614035_72616491_72616596_72620263_72621277_72622127_72622315_72626077
ENSMUSG00000034501.8_12	chr12	+	3419	8	NNC	ENSMUSG00000034501.8	novel	4300	11	NA	NA	-2	-11423	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	29.3097462372126	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTATATCTCCTGCTTAT	NA	False	NA	NA	False	AATAAA	-13	NA	72583154	72615470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_72583314_72588148_72588892_72602210_72602391_72602617_72603133_72603356_72603458_72603574_72603695_72613670_72614035_72614233
ENSMUSG00000034501.8_8	chr12	+	3654	7	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	-38	11423	-38	-11423	5prime_fragment	FALSE	canonical	3	9	junction_2	30.1754130966845	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTATATCTCCTGCTTAT	NA	False	NA	NA	False	AATAAA	-13	NA	72583118	72615470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_72583314_72588148_72588892_72602210_72602391_72602617_72603133_72603356_72603458_72603574_72603695_72613670
ENSMUSG00000034509.10_0	chr17	-	1219	3	FSM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	51	2	51	-2	multi-exon	FALSE	canonical	3	95	junction_1	3.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTTTTGATTTAGACTT	NA	False	NA	-4	True	AATAAA	-19	NA	46464428	46458314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46459211_46463704_46463968_46464368
ENSMUSG00000034509.10_3	chr17	-	314	1	ISM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	5851	2	5851	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTTTTGATTTAGACTT	NA	False	NA	-4	True	AATAAA	-19	NA	46458628	46458314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_46458300_46458600
ENSMUSG00000034509.10_5	chr17	-	1060	2	ISM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	610	3	610	-3	3prime_fragment	FALSE	canonical	3	95	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACACTTTTGATTTAGACT	NA	False	NA	-5	True	AATAAA	-18	NA	46463869	46458315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_46459211_46463704
ENSMUSG00000034518.15_0	chr8	+	3980	12	FSM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	-1	10	-1	-4	multi-exon	FALSE	canonical	3	57	junction_2	21.8858798209528	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTATAGTCCAGTCTT	NA	False	NA	22	True	ATTAAA	-13	NA	75720305	75758596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ENSMUSG00000034518.15_1	chr8	+	3874	11	NIC	ENSMUSG00000034518.15	novel	3989	12	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	24.8185414559357	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTATAGTCCAGTCTT	NA	False	NA	22	True	ATTAAA	-13	NA	75720307	75758596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_75720378_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ENSMUSG00000034518.15_2	chr8	+	3761	10	NIC	ENSMUSG00000034518.15	novel	4191	11	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	36.3790062916159	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTATAGTCCAGTCTT	NA	False	NA	22	True	ATTAAA	-13	NA	75720305	75758596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_75720378_75726187_75726337_75726440_75726520_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ENSMUSG00000034518.15_22	chr8	+	3008	7	ISM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	7424	10	1234	-4	3prime_fragment	FALSE	canonical	3	83	junction_1	17.202228537799	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTATAGTCCAGTCTT	NA	False	NA	22	True	ATTAAA	-13	NA	75727730	75758596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ENSMUSG00000034518.15_25	chr8	+	2681	7	FSM	ENSMUSG00000034518.15	ENSMUST00000109940.2	2656	7	37	-62	37	3	multi-exon	FALSE	canonical	3	11	junction_1	40.0489284084689	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTCCAGTCTTAGCTGTC	NA	False	NA	29	True	ATTAAA	-20	NA	75742886	75758603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_75743035_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ENSMUSG00000034518.15_32	chr8	+	1337	1	ISM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	36960	3	7784	3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTCCAGTCTTAGCTGTC	NA	False	NA	29	True	ATTAAA	-20	NA	75757266	75758603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_75757300_75758600
ENSMUSG00000034518.15_7	chr8	+	3863	11	FSM	ENSMUSG00000034518.15	ENSMUST00000041759.14	4191	11	324	4	1	-4	multi-exon	FALSE	canonical	3	15	junction_4	33.0128762757806	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTATAGTCCAGTCTT	NA	False	NA	22	True	ATTAAA	-13	NA	75720307	75758596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ENSMUSG00000034520.15_11	chr11	-	1891	3	FSM	ENSMUSG00000034520.15	ENSMUST00000068933.12	1903	3	6	6	6	-6	multi-exon	FALSE	canonical	3	506	junction_2	138	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGTCTGTTAAAGGG	NA	False	NA	-14	True	ATTAAA	-16	NA	102709999	102690410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102692022_102693666_102693743_102709795
ENSMUSG00000034520.15_12	chr11	-	2123	4	NNC	ENSMUSG00000034520.15	novel	2314	3	NA	NA	6	-6	at_least_one_novel_splicesite	FALSE	canonical	3	125	junction_3	300.941854849072	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGTCTGTTAAAGGG	NA	False	NA	-14	True	ATTAAA	-16	NA	102709999	102690410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_102692022_102693666_102693743_102695106_102695339_102709795
ENSMUSG00000034520.15_17	chr11	-	1201	1	ISM	ENSMUSG00000034520.15	ENSMUST00000107075.9	2314	3	4116	6	4116	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGTCTGTTAAAGGG	6122	False	NA	-14	True	ATTAAA	-16	NA	102691611	102690410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102690400_102691600
ENSMUSG00000034520.15_24	chr11	-	1856	3	FSM	ENSMUSG00000034520.15	ENSMUST00000092567.11	1890	3	28	6	28	-6	multi-exon	FALSE	canonical	3	30	junction_2	376	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGTCTGTTAAAGGG	NA	False	NA	-14	True	ATTAAA	-16	NA	102710498	102690410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102692022_102693666_102693743_102710329
ENSMUSG00000034520.15_28	chr11	-	1803	3	FSM	ENSMUSG00000034520.15	ENSMUST00000131164.2	247	3	35	-1591	4	-6	multi-exon	FALSE	canonical	3	62	junction_2	360	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGTCTGTTAAAGGG	NA	False	NA	-14	True	ATTAAA	-16	NA	102710001	102690410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102692022_102693666_102693743_102709885
ENSMUSG00000034522.11_0	chr14	+	4272	10	NIC	ENSMUSG00000034522.11	novel	4229	10	NA	NA	-48	-2	combination_of_known_splicesites	FALSE	canonical	3	43	junction_1	16.9297750708808	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTAGTGTGTGCCTCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	65596076	65636377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_65596205_65622847_65623110_65623775_65624009_65626238_65626349_65628735_65628966_65629503_65629605_65630368_65630670_65632204_65632298_65633303_65633408_65633667
ENSMUSG00000034522.11_1	chr14	+	4281	10	FSM	ENSMUSG00000034522.11	ENSMUST00000066994.7	4229	10	-54	2	-54	-2	multi-exon	FALSE	canonical	3	41	junction_1	17.4171761399877	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTAGTGTGTGCCTCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	65596070	65636377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_65596205_65622844_65623110_65623775_65624009_65626238_65626349_65628735_65628966_65629503_65629605_65630368_65630670_65632204_65632298_65633303_65633408_65633667
ENSMUSG00000034522.11_20	chr14	+	1444	1	ISM	ENSMUSG00000034522.11	ENSMUST00000066994.7	4229	10	38810	1	1806	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTAGTGTGTGCCTCTCTA	NA	False	NA	NA	False	AATAAA	-16	NA	65634934	65636378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_65634900_65636400
ENSMUSG00000034525.8_0	chr13	-	7823	19	FSM	ENSMUSG00000034525.8	ENSMUST00000043493.7	7667	19	-159	3	-159	-3	multi-exon	FALSE	canonical	0	0	junction_16	40.7369232218174	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACACTGTTGTGATTGT	NA	False	NA	-12	True	AATAAA	-16	NA	70785912	70736818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_70737932_70740691_70740791_70742943_70743051_70744273_70744465_70747168_70747330_70749186_70749356_70750297_70754996_70756894_70757296_70758652_70758740_70763051_70763109_70763192_70763233_70763452_70763536_70765215_70765254_70767103_70767181_70768776_70768889_70769556_70769576_70772041_70772077_70772526_70772586_70785635
ENSMUSG00000034525.8_4	chr13	-	4072	7	ISM	ENSMUSG00000034525.8	ENSMUST00000043493.7	7667	19	33224	3	-1845	-3	3prime_fragment	FALSE	canonical	3	141	junction_2	15.4569294061488	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACACTGTTGTGATTGT	NA	False	NA	-12	True	AATAAA	-16	NA	70752529	70736818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_70737932_70740691_70740791_70742943_70743051_70744273_70744465_70747168_70747330_70749186_70749356_70750297
ENSMUSG00000034532.10_0	chr14	+	1242	8	FSM	ENSMUSG00000034532.10	ENSMUST00000224629.2	3781	8	69	2470	32	0	multi-exon	FALSE	canonical	2	16	junction_5	3.88087934491604	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTACTGTGAAAGGTCCT	2607	False	NA	NA	False	ATTAAA	-17	NA	65504135	65558950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_65504233_65508148_65508285_65524580_65524617_65531232_65531440_65532841_65533007_65536634_65536865_65540548_65540652_65558682
ENSMUSG00000034538.9_0	chr7	+	2684	4	FSM	ENSMUSG00000034538.9	ENSMUST00000051435.8	2725	4	32	9	8	-9	multi-exon	FALSE	canonical	3	16	junction_3	9.89949493661167	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCATGTATTTTTAATCAA	3001	False	NA	NA	False	AATAAA	-20	NA	7174360	7186552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_7174558_7175135_7175175_7177553_7177681_7184231
ENSMUSG00000034538.9_3	chr7	+	2095	1	ISM	ENSMUSG00000034538.9	ENSMUST00000051435.8	2725	4	10121	17	10097	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTTCCCATGTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	7184449	7186544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_7184400_7186500
ENSMUSG00000034543.16_0	chr11	+	5441	27	FSM	ENSMUSG00000034543.16	ENSMUST00000093389.9	5085	27	-254	-102	49	-5	multi-exon	FALSE	canonical	2	110	junction_1	78.9355590669193	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACTCCTGCGTTCAGTA	NA	False	NA	70	True	TATAAA	-11	NA	3599239	3640472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3600147_3600307_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3633617_3633698_3634077_3634613_3634746_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110_3638300_3639034
ENSMUSG00000034543.16_1	chr11	+	5611	26	NNC	ENSMUSG00000034543.16	novel	5656	26	NA	NA	45	-3	intron_retention	FALSE	canonical	2	109	junction_20	77.0319414269172	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCCTGCGTTCAGTACA	NA	False	NA	72	True	TATAAA	-13	NA	3599235	3640474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3633617_3633698_3634077_3634613_3634749_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110_3638300_3639034
ENSMUSG00000034543.16_11	chr11	+	5583	25	NIC	ENSMUSG00000034543.16	novel	5085	27	NA	NA	48	0	intron_retention	FALSE	canonical	2	298	junction_19	51.9931719608984	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGGCCCTGCATTTTTA	NA	False	NA	24	True	CATAAA	-17	NA	3599238	3640370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3634077_3634613_3634746_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110_3638300_3639034
ENSMUSG00000034543.16_2	chr11	+	5494	26	FSM	ENSMUSG00000034543.16	ENSMUST00000096441.5	5656	26	49	113	49	-6	multi-exon	FALSE	canonical	2	298	junction_20	51.0520361983731	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGAATTTGGCCCTGCA	NA	False	NA	18	True	CATAAA	-11	NA	3599239	3640364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3633617_3633698_3634077_3634613_3634746_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110_3638300_3639034
ENSMUSG00000034544.18_1	chr3	+	3204	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	15	5	2	0	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACACTGTGACTGCTT	NA	False	NA	10	True	AATAAA	-10	NA	66893019	67265723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ENSMUSG00000034544.18_18	chr3	+	3179	10	NIC	ENSMUSG00000034544.18	novel	3224	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	104.560455665079	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACACTGTGACTGCTT	NA	False	NA	10	True	AATAAA	-10	NA	66893020	67265723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_66893116_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ENSMUSG00000034544.18_2	chr3	+	3199	10	NIC	ENSMUSG00000034544.18	novel	3224	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	103.881461410068	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACACTGTGACTGCTT	NA	False	NA	10	True	AATAAA	-10	NA	66893018	67265723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_66893140_66901849_66902046_66903803_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ENSMUSG00000034544.18_36	chr3	+	1524	1	ISM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	371195	5	365895	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACACTGTGACTGCTT	NA	False	NA	10	True	AATAAA	-10	NA	67264199	67265723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_67264200_67265700
ENSMUSG00000034551.13_0	chrX	-	4600	1	ISM	ENSMUSG00000034551.13	ENSMUST00000113422.9	9534	10	122543	6	122543	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGACCTCTCTTTTAAAG	NA	False	NA	NA	False	AATAAA	-13	NA	110484233	110479633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_110479600_110484200
ENSMUSG00000034551.13_1	chrX	-	2729	9	FSM	ENSMUSG00000034551.13	ENSMUST00000038472.7	9385	9	-6	6662	-6	-6662	multi-exon	FALSE	canonical	1	2	junction_8	2.9474565306379	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACACTTTTAATCTCA	NA	False	NA	NA	False	CATAAA	-14	NA	110606782	110486291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_110487096_110492491_110492615_110498891_110498976_110502657_110502738_110510314_110510523_110531997_110532145_110559533_110559588_110569330_110570441_110606663
ENSMUSG00000034551.13_4	chrX	-	2403	10	FSM	ENSMUSG00000034551.13	ENSMUST00000113422.9	9534	10	-37	7168	-37	-7166	multi-exon	FALSE	canonical	1	1	junction_9	3.2659863237109	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTTGAAATGGTTTGTT	NA	False	NA	NA	False	AATAAA	-11	NA	110606813	110486795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_110487096_110492491_110492615_110498891_110498976_110502657_110502738_110510314_110510523_110531997_110532145_110559533_110559588_110569330_110570441_110581039_110581187_110606663
ENSMUSG00000034557.15_1	chr4	-	298	1	ISM	ENSMUSG00000034557.15	ENSMUST00000106658.8	5987	18	141400	1340	84773	453	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGGTTGCACCCCCAGC	NA	False	NA	-17	True	CATAAA	-19	NA	108496300	108496002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_108496000_108496300
ENSMUSG00000034557.15_2	chr4	-	5023	19	FSM	ENSMUSG00000034557.15	ENSMUST00000106657.8	6459	19	51	1385	51	408	multi-exon	FALSE	canonical	2	6	junction_1	6.31771954481311	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTTCCTGTACAGAACTG	685	False	NA	-2	True	AATAAA	-19	NA	108637944	108496047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108496618_108499284_108499462_108501532_108501639_108507380_108507544_108514123_108514205_108517761_108517913_108531649_108531755_108534906_108534990_108538098_108538324_108539330_108539487_108542105_108542229_108546345_108546467_108548818_108548989_108550516_108550694_108552965_108553066_108574985_108577010_108581003_108581110_108584652_108584743_108637649
ENSMUSG00000034557.15_5	chr4	-	3922	11	ISM	ENSMUSG00000034557.15	ENSMUST00000106657.8	6459	19	62	43090	62	-41297	5prime_fragment	FALSE	canonical	3	12	junction_2	4.53431361950185	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGTGGTAATGCAATGAC	696	False	NA	NA	False	TATAAA	-16	NA	108637933	108537752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_108538324_108539330_108539487_108542105_108542229_108546345_108546467_108548818_108548989_108550516_108550694_108552965_108553066_108574985_108577010_108581003_108581110_108584652_108584743_108637649
ENSMUSG00000034557.15_6	chr4	-	3365	9	ISM	ENSMUSG00000034557.15	ENSMUST00000106657.8	6459	19	-72	47407	-72	-45614	5prime_fragment	FALSE	canonical	3	17	junction_6	3.56852560590505	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACTTTTTAGAGGCCTT	562	False	NA	NA	False	TTTAAA	-2	NA	108638067	108542069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_108542229_108546345_108546467_108548818_108548989_108550516_108550694_108552965_108553066_108574985_108577010_108581003_108581110_108584652_108584743_108637649
ENSMUSG00000034557.15_8	chr4	-	3616	3	ISM	ENSMUSG00000034557.15	ENSMUST00000106657.8	6459	19	107	83160	107	-81367	5prime_fragment	FALSE	canonical	3	18	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAAAACAAAACA	741	False	NA	NA	False	NA	NA	NA	108637888	108577822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_108581110_108584652_108584743_108637649
ENSMUSG00000034560.7_0	chr10	+	5609	34	NNC	ENSMUSG00000034560.7	novel	5858	33	NA	NA	35	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_33	60.9430630422038	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATATAATTTCAAAAC	NA	False	NA	3	True	AATAAA	-6	NA	83379839	83432326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034_83431742_83431944
ENSMUSG00000034560.7_105	chr10	+	1675	1	ISM	ENSMUSG00000034560.7	ENSMUST00000038388.7	5858	33	50854	4	9002	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTTCAAAACTGTCCTT	NA	False	NA	10	True	AATAAA	-13	NA	83430658	83432333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_83430700_83432300
ENSMUSG00000034560.7_7	chr10	+	5811	33	FSM	ENSMUSG00000034560.7	ENSMUST00000038388.7	5858	33	36	11	36	-11	multi-exon	FALSE	canonical	3	259	junction_12	27.5850956133924	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATATAATTTCAAAAC	NA	False	NA	3	True	AATAAA	-6	NA	83379840	83432326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034
ENSMUSG00000034563.17_0	chr9	+	2928	8	FSM	ENSMUSG00000034563.17	ENSMUST00000150826.9	2939	8	2	9	2	-2	multi-exon	FALSE	canonical	3	171	junction_6	12.4638252063927	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATAATGAGACTGCTT	NA	False	NA	NA	False	NA	NA	NA	72892861	72921211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211
ENSMUSG00000034563.17_1	chr9	+	2984	9	FSM	ENSMUSG00000034563.17	ENSMUST00000085350.11	2969	9	-25	10	2	-10	multi-exon	FALSE	canonical	3	41	junction_8	47.1963981676568	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACTAAAGGTCTCTCTC	NA	False	NA	NA	False	AATAAA	-13	NA	72892861	72923272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920609_72922613
ENSMUSG00000034563.17_17	chr9	+	1403	1	NIC	ENSMUSG00000089865.3	novel	4383	16	NA	NA	53677	-2388	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATGAGACTGCTTTC	7036	False	NA	NA	False	NA	NA	NA	72919810	72921213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_72919800_72921200
ENSMUSG00000034563.17_2	chr9	+	2648	9	FSM	ENSMUSG00000034563.17	ENSMUST00000037977.15	3151	9	151	352	2	-12	multi-exon	FALSE	canonical	1	1	junction_8	60.1040764008565	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAAACTAAAGGTCTCTC	NA	False	NA	NA	False	AATAAA	-11	NA	72892861	72923270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920275_72922613
ENSMUSG00000034563.17_4	chr9	+	2856	10	FSM	ENSMUSG00000034563.17	ENSMUST00000140675.8	2839	10	-21	4	-2	-4	multi-exon	FALSE	canonical	3	12	junction_9	64.8245495335079	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAATTCTAGAGTTGCCA	NA	False	NA	1	True	AATAAA	-25	NA	72892865	72923616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920609_72922613_72922712_72923179
ENSMUSG00000034566.11_0	chr11	-	3314	3	FSM	ENSMUSG00000034566.11	ENSMUST00000141474.8	420	3	-2896	2	3	-2	multi-exon	FALSE	canonical	3	2984	junction_1	128	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCGTCTCTGAGTAGATAA	NA	False	NA	-5	True	AATAAA	-20	NA	115310740	115306516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115306706_115306840_115306904_115307678
ENSMUSG00000034566.11_3	chr11	-	549	5	FSM	ENSMUSG00000034566.11	ENSMUST00000180072.8	486	5	-11	-52	-11	-7	multi-exon	FALSE	canonical	3	2962	junction_4	275.878936310839	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATCGTCTCTGAGTA	NA	False	NA	-10	True	AATAAA	-15	NA	115309344	115306521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211
ENSMUSG00000034566.11_4	chr11	-	583	6	FSM	ENSMUSG00000034566.11	ENSMUST00000043931.9	625	6	35	7	-10	-7	multi-exon	FALSE	canonical	3	1974	junction_5	551.930285452792	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATCGTCTCTGAGTA	NA	False	NA	-10	True	AATAAA	-15	NA	115310753	115306521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310717
ENSMUSG00000034566.11_8	chr11	-	2394	4	FSM	ENSMUSG00000034566.11	ENSMUST00000137563.8	510	4	-1891	7	4	-7	multi-exon	FALSE	canonical	3	2984	junction_1	272.998575494859	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATCGTCTCTGAGTA	NA	False	NA	-10	True	AATAAA	-15	NA	115310739	115306521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664
ENSMUSG00000034570.13_0	chr11	-	3338	13	FSM	ENSMUSG00000034570.13	ENSMUST00000044507.12	3370	13	24	8	2	-1	multi-exon	TRUE	canonical	1	2	junction_6	1.60511335702152	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTTGGCTCCTTCCTGAC	NA	False	NA	NA	False	ATTAAA	-13	NA	3454797	3444382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3445167_3445346_3445452_3445559_3445638_3445784_3445923_3449596_3449781_3449890_3450001_3450137_3450250_3450573_3450750_3451045_3451163_3451319_3451429_3451524_3451639_3451986_3453144_3454643
ENSMUSG00000034570.13_6	chr11	-	1838	8	ISM	ENSMUSG00000034570.13	ENSMUST00000110018.8	2384	14	3869	3	1232	-3	3prime_fragment	FALSE	canonical	1	2	junction_6	1.45686271816937	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTCTTGGCTCCTTCCTG	2042	False	NA	NA	False	ATTAAA	-11	NA	3450902	3444384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_3445167_3445346_3445452_3445559_3445638_3445784_3445923_3449596_3449781_3449890_3450001_3450137_3450250_3450573
ENSMUSG00000034573.15_1	chr5	+	3427	18	ISM	ENSMUSG00000034573.15	ENSMUST00000048957.11	7915	48	-294	56869	15	0	5prime_fragment	FALSE	canonical	3	18	junction_6	10.5656622127096	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATGCGTTTGTTTTCCT	NA	False	NA	NA	False	AGTAAA	-18	NA	103573072	103689300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103649232_103649779_103664193_103664290_103665353_103665436_103671432_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103688837
ENSMUSG00000034573.15_11	chr5	+	6740	41	ISM	ENSMUSG00000034573.15	ENSMUST00000048957.11	7915	48	-310	15440	-1	-15440	5prime_fragment	FALSE	canonical	2	11	junction_18	12.6273265183094	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATAGATAAGTCCTGT	NA	False	NA	NA	False	AATAAA	-23	NA	103573056	103730729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103649232_103649779_103664193_103664290_103665353_103665436_103671432_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103688837_103689253_103689387_103689483_103691273_103691331_103698090_103698181_103698614_103698723_103698912_103699045_103702561_103703020_103703953_103704086_103705744_103705839_103707002_103707089_103707736_103707900_103709797_103710013_103710140_103710240_103711876_103712206_103712980_103713156_103715891_103716051_103717295_103717468_103717563_103717775_103720955_103721024_103722944_103723007_103726738_103726833_103727563_103727702_103728535_103728619_103730604
ENSMUSG00000034573.15_23	chr5	+	1842	10	NNC	ENSMUSG00000034573.15	novel	7915	48	NA	NA	50397	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	5.55999822364302	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACCTGTGTCATCTCACT	4829	False	NA	NA	False	AATATA	-42	NA	103727828	103746169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_103727978_103728535_103728619_103730604_103730643_103734571_103734676_103735908_103736058_103737723_103737815_103738881_103739220_103741372_103741589_103742482_103742546_103745558
ENSMUSG00000034573.15_27	chr5	+	8274	48	FSM	ENSMUSG00000034573.15	ENSMUST00000048957.11	7915	48	-318	-41	-9	41	multi-exon	FALSE	canonical	1	2	junction_41	13.2327768430788	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACATAGACAACCAATTC	NA	False	NA	NA	False	AATAAA	-11	NA	103573048	103746210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103649232_103649779_103664193_103664290_103665353_103665436_103671432_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103688837_103689253_103689387_103689483_103691273_103691331_103698090_103698181_103698614_103698723_103698912_103699045_103702561_103703020_103703953_103704086_103705744_103705839_103707002_103707089_103707736_103707900_103709797_103710013_103710140_103710240_103711876_103712206_103712980_103713156_103715891_103716051_103717295_103717468_103717563_103717775_103720955_103721024_103722944_103723007_103726738_103726833_103727563_103727702_103728535_103728619_103730604_103730643_103734571_103734676_103735908_103736058_103737723_103737815_103738881_103739220_103741372_103741589_103742482_103742546_103745558
ENSMUSG00000034573.15_3	chr5	+	2883	17	NIC	ENSMUSG00000034573.15	novel	3439	18	NA	NA	13	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_6	12.8403660383963	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATGCGTTTGTTTTCCT	NA	False	NA	NA	False	AGTAAA	-18	NA	103573070	103689300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103664193_103664290_103665353_103665436_103671432_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103688837
ENSMUSG00000034573.15_8	chr5	+	6154	38	NIC	ENSMUSG00000034573.15	novel	7915	48	NA	NA	18	-15440	combination_of_known_splicesites	FALSE	canonical	3	9	junction_17	12.7567567567568	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATAGATAAGTCCTGT	NA	False	NA	NA	False	AATAAA	-23	NA	103573075	103730729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103649232_103649779_103664193_103664290_103665353_103665436_103671432_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103698090_103698181_103698614_103698723_103698912_103699045_103702561_103703020_103703953_103704086_103705744_103705839_103707002_103707089_103707736_103707900_103709797_103710013_103710140_103710240_103711876_103712206_103712980_103713156_103715891_103716051_103717295_103717468_103717563_103717775_103720955_103721024_103722944_103723007_103726738_103726833_103727563_103727702_103728535_103728619_103730604
ENSMUSG00000034574.11_0	chr12	+	5783	25	NIC	ENSMUSG00000034574.11	novel	5835	26	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_1	18.350560088334	151	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGATCTGTTTTCTAT	1822	False	NA	16	True	AATAAA	-16	NA	71877870	72039101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_71877971_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659_72035831_72036452
ENSMUSG00000034574.11_1	chr12	+	5898	25	NIC	ENSMUSG00000034574.11	novel	5879	26	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_1	21.2589441961103	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGATCTGTTTTCTAT	1842	False	NA	16	True	AATAAA	-16	NA	71877890	72039101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_71878106_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659_72035831_72036452
ENSMUSG00000034574.11_39	chr12	+	2221	1	ISM	ENSMUSG00000034574.11	ENSMUST00000223272.2	5835	26	159029	6	100377	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGATCTGTTTTCTAT	NA	False	NA	16	True	AATAAA	-16	NA	72036880	72039101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_72036900_72039100
ENSMUSG00000034575.14_0	chr13	-	4512	13	FSM	ENSMUSG00000034575.14	ENSMUST00000198607.5	4750	13	235	3	-196	0	multi-exon	FALSE	canonical	3	61	junction_1	10.3077640640442	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACTTTTCCTCTGAAGG	NA	False	NA	-16	True	AATAAA	-12	NA	69682501	69646080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_69648230_69648591_69648757_69650309_69650469_69651024_69651198_69651753_69651855_69652724_69652852_69655034_69655249_69657681_69657811_69658738_69658847_69661008_69661130_69663083_69663131_69663898_69664023_69681606
ENSMUSG00000034575.14_1	chr13	-	4550	13	NNC	ENSMUSG00000034575.14	novel	3994	13	NA	NA	194	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	17.3755495516609	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACTTTTCCTCTGAAGG	NA	False	NA	-16	True	AATAAA	-12	NA	69682542	69646080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_69648227_69648591_69648757_69650309_69650469_69651024_69651198_69651753_69651855_69652724_69652852_69655034_69655249_69657681_69657811_69658738_69658847_69661008_69661130_69663083_69663131_69663898_69664023_69681606
ENSMUSG00000034575.14_4	chr13	-	1656	1	ISM	ENSMUSG00000034575.14	ENSMUST00000198607.5	4750	13	35000	3	32815	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACTTTTCCTCTGAAGG	NA	False	NA	-16	True	AATAAA	-12	NA	69647736	69646080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_69646100_69647700
ENSMUSG00000034584.4_0	chr9	+	6897	4	NIC	ENSMUSG00000034584.4	novel	2315	3	NA	NA	123	1281	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	2.05480466765633	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGTTGTCTGTAATTGC	NA	False	NA	NA	False	NA	NA	NA	53252611	53290095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_53252771_53264453_53264503_53278376_53278513_53283542
ENSMUSG00000034584.4_1	chr9	+	4407	1	Genic_Genomic	ENSMUSG00000034584.4	novel	NA	NA	NA	NA	33196	1277	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCTTTGTTGTCTGTAA	NA	False	NA	NA	False	NA	NA	NA	53285684	53290091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_+_53285700_53290100
ENSMUSG00000034586.15_0	chr11	-	3240	19	FSM	ENSMUSG00000034586.15	ENSMUST00000044152.13	3236	19	-7	3	-7	-3	multi-exon	FALSE	canonical	2	4	junction_16	3.67045259092421	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGTTGTGTCTCTGTA	8690	False	NA	-3	True	AATAAA	-12	NA	115258552	115238535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115239359_115239625_115239785_115239911_115240004_115240747_115240829_115241317_115241425_115241744_115241973_115243410_115243576_115245225_115245305_115245411_115245564_115245850_115245942_115246119_115246261_115247190_115247248_115247445_115247669_115249495_115249613_115249802_115249910_115250520_115250635_115251147_115251319_115252464_115252615_115258369
ENSMUSG00000034586.15_3	chr11	-	3235	19	FSM	ENSMUSG00000034586.15	ENSMUST00000106542.9	3276	19	38	3	1	-3	multi-exon	FALSE	canonical	1	2	junction_16	3.88928569404159	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGTTGTGTCTCTGTA	8698	False	NA	-3	True	AATAAA	-12	NA	115258544	115238535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115239359_115239625_115239785_115239911_115240004_115240747_115240829_115241317_115241425_115241744_115241973_115243410_115243576_115245225_115245305_115245411_115245564_115245850_115245942_115246119_115246261_115247190_115247248_115247445_115247669_115249495_115249613_115249802_115249910_115250520_115250638_115251147_115251319_115252464_115252615_115258369
ENSMUSG00000034587.9_0	chr11	+	1616	2	FSM	ENSMUSG00000034587.9	ENSMUST00000136038.2	407	2	30	-1239	30	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATAAGGACTGTAGCTT	NA	False	NA	NA	False	AATAAA	-17	NA	3402394	3408338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3402435_3406762
ENSMUSG00000034587.9_1	chr11	+	121	1	ISM	ENSMUSG00000034587.9	ENSMUST00000144844.2	505	2	26	4380	-9	-4380	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAATCATAGCATTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	3402462	3402583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_3402500_3402600
ENSMUSG00000034591.6_1	chr10	-	4730	11	FSM	ENSMUSG00000034591.6	ENSMUST00000039956.6	4742	11	7	5	7	-5	multi-exon	FALSE	canonical	0	0	junction_1	1.35646599662505	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATTTTCTTGTGCCATT	NA	False	NA	NA	False	AATAAA	-8	NA	83173739	83066716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_83069615_83090646_83090796_83091874_83092007_83117233_83117314_83119585_83119734_83133017_83133165_83137025_83137171_83140167_83140240_83149278_83149387_83151918_83152654_83173623
ENSMUSG00000034593.17_0	chr9	+	6476	40	NIC	ENSMUSG00000034593.17	novel	6372	41	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	3	40	junction_18	11.688258408137	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAACTGGCCAAGTAACTT	2349	False	NA	6	True	AATAAA	-14	NA	74978485	75125763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_74978942_75023467_75023579_75027954_75028127_75030192_75030338_75037253_75037411_75043624_75043769_75047929_75048012_75048716_75048825_75051354_75051462_75054146_75054413_75055137_75055220_75059174_75059316_75061037_75061164_75063463_75063548_75067699_75067862_75068713_75068812_75071411_75071499_75071577_75071687_75074300_75074513_75076206_75076364_75078820_75079061_75081233_75081483_75083799_75083894_75087305_75087455_75089180_75089295_75091559_75091704_75091919_75091974_75093176_75093405_75097181_75097283_75099665_75099747_75101220_75101420_75104924_75105019_75108553_75108701_75110989_75111145_75116495_75116586_75118299_75118451_75120073_75120357_75122366_75122542_75124780_75124862_75125122
ENSMUSG00000034593.17_1	chr9	+	3631	5	FSM	ENSMUSG00000034593.17	ENSMUST00000136871.2	1919	5	-27	-1685	-9	1685	multi-exon	FALSE	canonical	3	52	junction_1	5.33853912601566	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAAAAACCAACC	2324	False	NA	NA	False	NA	NA	NA	74978460	75039975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_74978942_75023467_75023579_75027954_75028127_75030192_75030338_75037253
ENSMUSG00000034593.17_33	chr9	+	4572	1	ISM	ENSMUSG00000034593.17	ENSMUST00000123128.8	11702	41	147918	11	25333	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAAGAAACGTTGTCTT	NA	False	NA	NA	False	AATAAA	-8	NA	75126387	75130959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_75126400_75131000
ENSMUSG00000034593.17_34	chr9	+	2293	1	ISM	ENSMUSG00000034593.17	ENSMUST00000123128.8	11702	41	150201	7	27616	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAACGTTGTCTTTGTC	NA	False	NA	NA	False	AATAAA	-12	NA	75128670	75130963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_75128700_75131000
ENSMUSG00000034593.17_4	chr9	+	6545	41	NIC	ENSMUSG00000034593.17	novel	11702	41	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	14	junction_31	15.7384084328753	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGTAACTGGCCAAGTAA	2352	False	NA	3	True	AATAAA	-11	NA	74978488	75125760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_74978942_75023467_75023579_75027954_75028127_75030192_75030338_75037253_75037411_75043624_75043769_75047929_75048012_75048716_75048825_75051354_75051462_75054146_75054413_75055137_75055220_75059174_75059316_75061037_75061164_75063463_75063548_75067699_75067862_75068713_75068812_75071411_75071499_75071577_75071687_75074300_75074513_75076206_75076364_75078820_75079061_75081233_75081483_75083799_75083894_75087305_75087455_75089180_75089295_75091559_75091704_75091919_75091974_75093176_75093405_75097181_75097283_75099665_75099747_75101220_75101420_75103407_75103483_75104924_75105019_75108553_75108701_75110989_75111145_75116495_75116586_75118299_75118451_75120073_75120357_75122366_75122542_75124780_75124862_75125122
ENSMUSG00000034593.17_5	chr9	+	6398	39	NIC	ENSMUSG00000034593.17	novel	6480	40	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_29	15.1526169539792	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGCCAAGTAACTTCCT	2349	False	NA	9	True	AATAAA	-17	NA	74978485	75125766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_74978942_75023467_75023579_75027954_75028127_75030192_75030338_75037253_75037411_75043624_75043769_75047929_75048012_75048716_75048825_75051354_75051462_75054146_75054413_75055137_75055220_75059174_75059316_75061037_75061164_75063463_75063548_75067699_75067862_75068713_75068812_75071411_75071499_75071577_75071687_75074300_75074513_75076206_75076364_75078820_75079061_75081233_75081483_75083799_75083894_75087305_75087455_75089180_75089295_75091559_75091704_75091919_75091974_75093176_75093405_75097181_75097283_75101220_75101420_75104924_75105019_75108553_75108701_75110989_75111145_75116495_75116586_75118299_75118451_75120073_75120357_75122366_75122542_75124780_75124862_75125122
ENSMUSG00000034595.18_0	chr17	+	2687	4	FSM	ENSMUSG00000034595.18	ENSMUST00000144382.8	2536	4	-50	-101	-18	-1	multi-exon	FALSE	canonical	1	2	junction_1	38.7928974026031	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGCTGCCTTCCTTTGT	8846	False	NA	12	True	AATAAA	-19	NA	36176466	36186485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36176587_36178121_36179678_36184617_36184832_36185688
ENSMUSG00000034595.18_2	chr17	+	2688	4	FSM	ENSMUSG00000034595.18	ENSMUST00000122899.8	2743	4	53	2	53	0	multi-exon	FALSE	canonical	3	22	junction_1	29.4089933334837	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGCTGCCTTCCTTTGTT	9380	False	NA	13	True	AATAAA	-20	NA	36177000	36186486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36177121_36178121_36179678_36184617_36184832_36185688
ENSMUSG00000034595.18_3	chr17	+	3160	3	FSM	ENSMUSG00000034595.18	ENSMUST00000187690.7	3185	3	23	2	-22	0	multi-exon	FALSE	canonical	3	80	junction_1	4	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGCTGCCTTCCTTTGTT	9909	False	NA	13	True	AATAAA	-20	NA	36177529	36186486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36179678_36184617_36184832_36185688
ENSMUSG00000034601.18_0	chr12	+	5148	28	FSM	ENSMUSG00000034601.18	ENSMUST00000045907.16	4507	28	-652	11	340	-11	multi-exon	FALSE	canonical	3	73	junction_27	19.0025628189986	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAACTAAGTCTGGCTG	NA	False	NA	11	True	AATAAA	-9	NA	71183961	71290066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349_71209575_71211157_71211333_71213839_71214035_71217292_71217481_71219902_71220014_71222696_71222778_71224602_71224797_71225813_71225933_71231196_71231397_71234154_71234312_71235361_71235582_71236180_71236429_71237668_71237740_71240040_71240164_71241065_71241241_71289717
ENSMUSG00000034601.18_1	chr12	+	5415	30	FSM	ENSMUSG00000034601.18	ENSMUST00000149564.8	5763	30	337	11	337	-11	multi-exon	FALSE	canonical	3	69	junction_27	23.3199327353747	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAACTAAGTCTGGCTG	NA	False	NA	11	True	AATAAA	-9	NA	71183958	71290066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349_71209575_71211157_71211333_71213839_71214035_71217292_71217481_71219902_71220014_71222696_71222778_71224602_71224797_71225813_71225933_71231196_71231397_71234154_71234312_71235361_71235582_71236180_71236429_71237668_71237740_71240040_71240164_71241065_71241241_71262815_71262971_71265964_71266074_71289717
ENSMUSG00000034601.18_25	chr12	+	2762	13	ISM	ENSMUSG00000034601.18	ENSMUST00000149564.8	5763	30	341	80282	341	8134	5prime_fragment	FALSE	canonical	3	118	junction_6	8.91471941354422	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAGGCCTCTTAGTGTGTT	NA	False	NA	NA	False	CATAAA	-19	NA	71183962	71209795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349
ENSMUSG00000034602.16_4	chr10	-	6056	34	FSM	ENSMUSG00000034602.16	ENSMUST00000170935.9	5302	34	-354	-400	4	-2	multi-exon	FALSE	canonical	3	39	junction_22	24.7608209734668	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGTTGCATTTATTTA	NA	False	NA	-99	True	AATAAA	-17	NA	122912284	122831065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_122831739_122835563_122835647_122838600_122838809_122841916_122842041_122842876_122842938_122844040_122844232_122845407_122845537_122846398_122846543_122849272_122849896_122850845_122851045_122852167_122852462_122853979_122854143_122856208_122856385_122858738_122858850_122859814_122859917_122861984_122862076_122862158_122862233_122862311_122862393_122862813_122862919_122865037_122865151_122866014_122866200_122866944_122867030_122868427_122868655_122870209_122870364_122871372_122871510_122871916_122872042_122874365_122874561_122878135_122878262_122878879_122878975_122882202_122882333_122887541_122887674_122888089_122888218_122895092_122895157_122911756
ENSMUSG00000034602.16_45	chr10	-	1773	10	FSM	ENSMUSG00000034602.16	ENSMUST00000219203.2	1844	10	5	66	5	-66	multi-exon	FALSE	canonical	3	125	junction_3	13.8884444373331	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTATATTTTTATAAAATA	NA	False	NA	NA	False	AGTAAA	-2	NA	122912283	122871258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_122871510_122871916_122872042_122874365_122874561_122878135_122878262_122878879_122878975_122882202_122882333_122887541_122887674_122888089_122888218_122895092_122895157_122911756
ENSMUSG00000034602.16_7	chr10	-	6051	34	FSM	ENSMUSG00000034602.16	ENSMUST00000037557.9	5511	34	-352	-188	6	-2	multi-exon	FALSE	canonical	3	100	junction_22	19.412065393159	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGTTGCATTTATTTA	NA	False	NA	-99	True	AATAAA	-17	NA	122912282	122831065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_122831739_122835563_122835647_122838600_122838809_122841916_122842041_122842876_122842938_122844040_122844232_122845407_122845537_122846398_122846543_122849272_122849896_122850845_122851045_122852167_122852462_122853979_122854143_122856208_122856385_122858738_122858850_122859814_122859917_122861984_122862076_122862158_122862233_122862311_122862393_122862813_122862919_122865037_122865151_122866014_122866200_122866944_122867027_122868427_122868655_122870209_122870364_122871372_122871510_122871916_122872042_122874365_122874561_122878135_122878262_122878879_122878975_122882202_122882333_122887541_122887674_122888089_122888218_122895092_122895157_122911756
ENSMUSG00000034607.7_3	chrX	-	3920	17	FSM	ENSMUSG00000034607.7	ENSMUST00000039887.4	3886	17	-33	-1	-33	1	multi-exon	FALSE	canonical	1	1	junction_16	3.09989919190931	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTATTGTCTTTGTGAA	NA	False	NA	NA	False	AATAAA	-12	NA	111608381	111548126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_111550139_111552674_111552790_111554029_111554113_111554943_111555073_111556408_111556529_111556815_111556969_111557756_111557871_111558714_111558808_111565785_111565861_111567148_111567177_111571447_111571579_111573845_111574020_111578730_111578833_111587067_111587149_111593090_111593166_111607866_111608205_111608284
ENSMUSG00000034610.15_1	chr4	+	5834	30	ISM	ENSMUSG00000034610.15	ENSMUST00000043368.12	6054	31	591	6	7	-6	3prime_fragment	FALSE	canonical	3	91	junction_25	21.0061991869214	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAGTCAAATTTGGTTA	NA	False	NA	9	True	AATAAA	-9	NA	108317213	108416606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406437_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415911
ENSMUSG00000034610.15_3	chr4	+	5846	30	NNC	ENSMUSG00000034610.15	novel	6054	31	NA	NA	7	-6	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_25	25.401508283324	53	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAGTCAAATTTGGTTA	NA	False	NA	9	True	AATAAA	-9	NA	108317213	108416606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406425_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415911
ENSMUSG00000034610.15_33	chr4	+	5095	29	ISM	ENSMUSG00000034610.15	ENSMUST00000043368.12	6054	31	20004	4	349	-4	3prime_fragment	FALSE	canonical	3	91	junction_24	21.0056782896474	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGTCAAATTTGGTTAAT	8468	False	NA	11	True	AATAAA	-11	NA	108336626	108416608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406437_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415911
ENSMUSG00000034610.15_7	chr4	+	5851	30	NIC	ENSMUSG00000034610.15	novel	6054	31	NA	NA	7	-4	combination_of_known_junctions	FALSE	canonical	3	33	junction_25	27.6159322606615	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGTCAAATTTGGTTAAT	NA	False	NA	11	True	AATAAA	-11	NA	108317213	108416608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406422_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415911
ENSMUSG00000034610.15_9	chr4	+	5831	30	NIC	ENSMUSG00000034610.15	novel	6054	31	NA	NA	7	-6	combination_of_known_junctions	FALSE	canonical	3	27	junction_29	29.8622282388044	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAGTCAAATTTGGTTA	NA	False	NA	9	True	AATAAA	-9	NA	108317213	108416606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406437_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415914
ENSMUSG00000034612.8_0	chr10	+	1769	3	FSM	ENSMUSG00000034612.8	ENSMUST00000040110.8	5527	3	-24	3782	-24	-3782	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATAGTTATTTAAACGT	9103	False	NA	NA	False	CATAAA	-15	NA	82821307	83027952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_82821817_82927902_82927989_83026778
ENSMUSG00000034612.8_3	chr10	+	3319	1	ISM	ENSMUSG00000034612.8	ENSMUST00000040110.8	5527	3	207067	17	207067	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAGAAAAAAAAAAAGCC	NA	False	NA	NA	False	ATTAAA	-4	NA	83028398	83031717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_83028400_83031700
ENSMUSG00000034613.13_1	chr10	+	3105	10	FSM	ENSMUSG00000034613.13	ENSMUST00000067918.12	6369	10	8	3256	8	1090	multi-exon	FALSE	canonical	0	0	junction_1	11.6428327977153	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTCATTGTGATGTTC	NA	False	NA	NA	False	ATTAAA	-16	NA	122514694	122778444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_122515336_122618087_122618251_122638139_122638485_122647351_122647465_122692966_122693052_122714413_122714533_122739996_122740061_122743411_122743520_122756598_122756751_122777129
ENSMUSG00000034613.13_5	chr10	+	2095	8	ISM	ENSMUSG00000034613.13	ENSMUST00000067918.12	6369	10	123659	3256	-8803	1090	3prime_fragment	FALSE	canonical	3	22	junction_1	4.03049599419025	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTCATTGTGATGTTC	NA	False	NA	NA	False	ATTAAA	-16	NA	122638345	122778444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_122638485_122647351_122647465_122692966_122693052_122714413_122714533_122739996_122740061_122743411_122743520_122756598_122756751_122777129
ENSMUSG00000034613.13_6	chr10	+	2114	1	ISM	ENSMUSG00000034613.13	ENSMUST00000067918.12	6369	10	264893	7	48307	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAAATGGTTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	122779579	122781693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_122779600_122781700
ENSMUSG00000034614.15_0	chr11	+	2174	6	FSM	ENSMUSG00000034614.15	ENSMUST00000045153.11	2573	6	391	8	-1	-8	multi-exon	FALSE	canonical	2	3	junction_1	4.60434577328853	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGCACCTTTTTTGTGG	NA	False	NA	NA	False	TATAAA	-17	NA	3280791	3292963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3281005_3281914_3282032_3282108_3282229_3283208_3283413_3283504_3283584_3291522
ENSMUSG00000034614.15_2	chr11	+	1894	4	FSM	ENSMUSG00000034614.15	ENSMUST00000136474.2	617	4	-2	-1275	-2	-4	multi-exon	FALSE	canonical	2	2	junction_1	6.0184900284226	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCACCTTTTTTGTGGTGAT	NA	False	NA	NA	False	TATAAA	-21	NA	3282448	3292967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3282615_3283208_3283413_3283504_3283584_3291522
ENSMUSG00000034614.15_4	chr11	+	1915	3	ISM	ENSMUSG00000034614.15	ENSMUST00000136474.2	617	4	559	-1263	38	-16	3prime_fragment	FALSE	canonical	2	5	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTTTACCTTGCACCTT	NA	False	NA	NA	False	TATAAA	-9	NA	3283009	3292955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_3283413_3283504_3283584_3291522
ENSMUSG00000034616.18_0	chr19	-	2642	14	FSM	ENSMUSG00000034616.18	ENSMUST00000113852.6	2705	14	65	-2	-15	2	multi-exon	TRUE	canonical	1	1	junction_12	2.03228381748045	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGACATTTTCCATTTGT	2415	False	NA	-23	True	AATAAA	-16	NA	4319143	4311721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4312661_4313574_4313846_4313935_4314137_4314341_4314489_4315130_4315178_4315319_4315449_4315637_4315732_4315837_4316027_4316134_4316201_4316402_4316475_4316549_4316666_4317774_4318007_4318572_4318611_4319042
ENSMUSG00000034616.18_2	chr19	-	2523	13	NIC	ENSMUSG00000034616.18	novel	2705	14	NA	NA	-48	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	2.3094010767585	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGACATTTTCCATTTGT	2302	False	NA	-23	True	AATAAA	-16	NA	4319256	4311721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4312661_4313574_4313846_4313935_4314137_4314341_4314489_4315130_4315178_4315319_4315449_4315637_4315732_4315837_4316027_4316134_4316201_4316402_4316475_4316549_4316666_4318572_4318611_4319042
ENSMUSG00000034617.8_0	chr13	-	3177	15	FSM	ENSMUSG00000034617.8	ENSMUST00000045827.5	3692	15	5	510	-3	73	multi-exon	FALSE	canonical	3	277	junction_10	41.7021141733919	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGGATCCTGTGCTAT	NA	False	NA	-17	True	AATAAA	-5	NA	68730235	68709408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730183
ENSMUSG00000034617.8_1	chr13	-	2800	14	FSM	ENSMUSG00000034617.8	ENSMUST00000223101.2	2728	14	1	-73	1	73	multi-exon	FALSE	canonical	3	76	junction_10	83.6727918422384	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGGATCCTGTGCTAT	NA	False	NA	-17	True	AATAAA	-5	NA	68730231	68709408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68725706_68725825_68727661_68727816_68728669_68728835_68730183
ENSMUSG00000034617.8_32	chr13	-	3009	14	NIC	ENSMUSG00000034617.8	novel	3692	15	NA	NA	0	71	combination_of_known_junctions	FALSE	canonical	3	56	junction_12	89.8987596257508	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAAAGGATCCTGTGCT	NA	False	NA	-19	True	AATAAA	-3	NA	68730223	68709410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68728669_68728835_68730183
ENSMUSG00000034617.8_4	chr13	-	2646	13	NIC	ENSMUSG00000034617.8	novel	2728	14	NA	NA	3	75	combination_of_known_junctions	FALSE	canonical	3	56	junction_11	116.868753546684	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGATCCTGTGCTATTG	NA	False	NA	-15	True	AATAAA	-7	NA	68730229	68709406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68725706_68725825_68728669_68728835_68730183
ENSMUSG00000034617.8_7	chr13	-	3165	15	NNC	ENSMUSG00000034617.8	novel	3692	15	NA	NA	3	73	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	101.650085075805	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGGATCCTGTGCTAT	NA	False	NA	-17	True	AATAAA	-5	NA	68730237	68709408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727675_68727816_68728669_68728835_68730183
ENSMUSG00000034620.18_10	chr10	-	1646	7	NIC	ENSMUSG00000034620.18	novel	1546	7	NA	NA	-1	-4	combination_of_known_splicesites	FALSE	canonical	3	4	junction_5	138.233799533013	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACCATGTATTCATAAGT	NA	False	NA	-14	True	AATAAA	-15	NA	121933032	121917168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932133_121932252_121932367_121932804
ENSMUSG00000034620.18_16	chr10	-	1167	5	ISM	ENSMUSG00000034620.18	ENSMUST00000140299.3	4793	6	287	10528	42	3	5prime_fragment	FALSE	canonical	3	258	junction_4	22.2078251974389	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACCAAACTATCATATGCC	NA	False	NA	NA	False	ATTAAA	-15	NA	121932989	121924546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932804
ENSMUSG00000034620.18_18	chr10	-	927	4	ISM	ENSMUSG00000034620.18	ENSMUST00000140299.3	4793	6	262	12203	17	-1295	5prime_fragment	FALSE	canonical	3	258	junction_3	23.6830928911088	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCTCAGTGGCAGTAGTG	NA	False	NA	NA	False	AATAAA	-16	NA	121933014	121926221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_121926680_121930494_121930598_121931843_121932000_121932804
ENSMUSG00000034620.18_4	chr10	-	1382	6	FSM	ENSMUSG00000034620.18	ENSMUST00000140299.3	4793	6	261	3150	16	-4	multi-exon	FALSE	canonical	3	258	junction_5	21.4513402844671	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACCATGTATTCATAAGT	NA	False	NA	-14	True	AATAAA	-15	NA	121933015	121917168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932804
ENSMUSG00000034620.18_6	chr10	-	1496	6	NIC	ENSMUSG00000034620.18	novel	4793	6	NA	NA	35	-4	combination_of_known_junctions	FALSE	canonical	3	16	junction_5	112.932546238894	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACCATGTATTCATAAGT	NA	False	NA	-14	True	AATAAA	-15	NA	121932996	121917168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932133_121932804
ENSMUSG00000034620.18_7	chr10	-	798	1	NIC	ENSMUSG00000034620.18	novel	4793	6	NA	NA	7331	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATGTATTCATAAGTGTA	NA	False	NA	-11	True	AATAAA	-18	NA	121917963	121917165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_121917200_121918000
ENSMUSG00000034621.15_0	chr11	-	6817	8	FSM	ENSMUSG00000034621.15	ENSMUST00000143842.2	6871	8	49	5	26	-5	multi-exon	FALSE	canonical	3	114	junction_1	22.9658131018384	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAACTTAGTGGAGTCTGT	686	False	NA	-8	True	AATAAA	-13	NA	102446976	102366745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102372914_102378325_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
ENSMUSG00000034621.15_1	chr11	-	6835	9	NIC	ENSMUSG00000034621.15	novel	6871	8	NA	NA	26	-5	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	61.2204010114276	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAACTTAGTGGAGTCTGT	686	False	NA	-8	True	AATAAA	-13	NA	102446976	102366745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_102372914_102378325_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102422138_102422157_102429107_102429183_102446905
ENSMUSG00000034621.15_2	chr11	-	4073	1	ISM	ENSMUSG00000034621.15	ENSMUST00000143842.2	6871	8	76209	3	28457	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTAGTGGAGTCTGTTG	NA	False	NA	-6	True	AATAAA	-15	NA	102370816	102366743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102366700_102370800
ENSMUSG00000034636.10_0	chr4	-	4169	1	ISM	ENSMUSG00000034636.10	ENSMUST00000043616.7	8691	14	67197	7	8139	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAAGTGTGGTCTACTT	NA	False	NA	-4	True	AATAAA	-14	NA	108091096	108086927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_108086900_108091100
ENSMUSG00000034636.10_1	chr4	-	5508	14	FSM	ENSMUSG00000034636.10	ENSMUST00000043616.7	8691	14	1	3182	1	-3182	multi-exon	FALSE	canonical	1	32	junction_8	23.507269428335	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCATCTGGGTTTTGTGT	NA	False	NA	-5	True	AATAAA	-17	NA	108158292	108090102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108093392_108094538_108094637_108099017_108099071_108099196_108099395_108101922_108101971_108102072_108102235_108107691_108107743_108107970_108108071_108109348_108109414_108112397_108112575_108117146_108117288_108123014_108123770_108129414_108129581_108158087
ENSMUSG00000034639.8_0	chr6	+	1616	2	FSM	ENSMUSG00000034639.8	ENSMUST00000049246.7	1612	2	0	-4	0	4	multi-exon	FALSE	canonical	1	3	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCCGATCTTATTACTTG	NA	False	NA	10	True	AATAAA	-20	NA	108042005	108054087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_108042201_108052666
ENSMUSG00000034639.8_1	chr6	+	931	1	Genic_Genomic	ENSMUSG00000034639.8	novel	NA	NA	NA	NA	11134	4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCCGATCTTATTACTTG	NA	False	NA	10	True	AATAAA	-20	NA	108053156	108054087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_+_108053200_108054100
ENSMUSG00000034640.10_0	chr3	+	3781	6	FSM	ENSMUSG00000034640.10	ENSMUST00000047906.10	4191	6	31	379	-19	-379	multi-exon	FALSE	canonical	3	103	junction_5	12.4835892274618	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAACTTCTGTTTTGTTCT	NA	False	NA	15	True	NA	NA	NA	65435861	65462560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_65436054_65438644_65439606_65453627_65453797_65454945_65455107_65459956_65460233_65460538
ENSMUSG00000034640.10_6	chr3	+	3277	5	ISM	ENSMUSG00000034640.10	ENSMUST00000047906.10	4191	6	3126	379	3076	-379	3prime_fragment	FALSE	canonical	3	103	junction_4	10.9857862713599	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAACTTCTGTTTTGTTCT	NA	False	NA	15	True	NA	NA	NA	65438956	65462560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_65439606_65453627_65453797_65454945_65455107_65459956_65460233_65460538
ENSMUSG00000034640.10_7	chr3	+	1504	1	ISM	ENSMUSG00000034640.10	ENSMUST00000047906.10	4191	6	25226	379	7596	-379	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAACTTCTGTTTTGTTCT	NA	False	NA	15	True	NA	NA	NA	65461056	65462560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_65461100_65462600
ENSMUSG00000034645.15_0	chr4	-	2635	14	FSM	ENSMUSG00000034645.15	ENSMUST00000223127.2	2283	14	-121	-231	5	231	multi-exon	FALSE	canonical	1	26	junction_8	15.5010974988431	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGAAAACAAGAAATGATT	5548	False	NA	NA	False	NA	NA	NA	108075240	108038703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108039111_108040844_108040943_108041629_108041692_108044436_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791_108062544_108067252_108067419_108075029
ENSMUSG00000034645.15_1	chr4	-	1613	12	ISM	ENSMUSG00000034645.15	ENSMUST00000223127.2	2283	14	13096	-106	13096	106	3prime_fragment	FALSE	canonical	1	26	junction_8	15.5451887271266	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATTGACTGGTTACTTT	9624	False	NA	-8	True	NA	NA	NA	108062023	108038828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_108039111_108040844_108040943_108041629_108041692_108044436_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791
ENSMUSG00000034645.15_11	chr4	-	2406	14	FSM	ENSMUSG00000034645.15	ENSMUST00000106690.9	2421	14	14	1	14	-1	multi-exon	FALSE	canonical	0	0	junction_1	23.6810662641758	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGTGTTTTCTTTTA	5557	False	NA	NA	False	TTTAAA	-18	NA	108075231	108039131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108039319_108040844_108040943_108041629_108041692_108044436_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791_108062544_108067252_108067419_108075029
ENSMUSG00000034645.15_13	chr4	-	2352	13	ISM	ENSMUSG00000034645.15	ENSMUST00000106690.9	2421	14	-14	1609	-14	-1609	5prime_fragment	FALSE	canonical	1	26	junction_7	15.5051514736949	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAAAAACTAAAGCTAGG	5529	False	NA	NA	False	NA	NA	NA	108075259	108040739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_108040943_108041629_108041692_108044436_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791_108062544_108067252_108067419_108075029
ENSMUSG00000034645.15_15	chr4	-	2207	11	ISM	ENSMUSG00000034645.15	ENSMUST00000106690.9	2421	14	-6	5178	-6	-5178	5prime_fragment	FALSE	canonical	1	26	junction_5	16.8110082981361	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAGTTTCTTAGTTTC	5537	False	NA	NA	False	AATGAA	-30	NA	108075251	108044308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791_108062544_108067252_108067419_108075029
ENSMUSG00000034645.15_5	chr4	-	2672	11	ISM	ENSMUSG00000034645.15	ENSMUST00000223127.2	2283	14	16688	-1496	16688	1496	3prime_fragment	FALSE	canonical	1	26	junction_8	16.2938638757049	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCATCCCTTTTCTTTCC	NA	False	NA	0	True	NA	NA	NA	108058431	108037438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_108039111_108040844_108040943_108041629_108041692_108044436_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389
ENSMUSG00000034647.16_0	chr17	-	6757	12	NIC	ENSMUSG00000034647.16	novel	10821	13	NA	NA	0	512	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	22.3396027547418	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACGTAAGAGTGAAAGTG	NA	False	NA	NA	False	AATAAA	-18	NA	66384039	66274495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_66275170_66279291_66279388_66283015_66283160_66286496_66286596_66289830_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
ENSMUSG00000034647.16_16	chr17	-	7377	8	FSM	ENSMUSG00000034647.16	ENSMUST00000150766.2	1513	8	-41	-5823	7	-5374	multi-exon	FALSE	canonical	3	23	junction_1	22.2481368171974	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTTCATTGTATAGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	66384058	66288216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
ENSMUSG00000034647.16_20	chr17	-	3977	8	NNC	ENSMUSG00000034647.16	novel	2342	8	NA	NA	-1	2261	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	25.1331149957134	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACCGAATATAAAAGT	NA	False	NA	NA	False	NA	NA	NA	66384040	66327622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_66330513_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
ENSMUSG00000034647.16_26	chr17	-	1010	5	FSM	ENSMUSG00000034647.16	ENSMUST00000129756.8	1403	5	45	348	0	-7	multi-exon	FALSE	canonical	2	19	junction_2	27.5170401751351	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTAAACATTTTTTAG	NA	False	NA	NA	False	AATAAA	-23	NA	66384039	66344140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_66344635_66349527_66349597_66356780_66356929_66359948_66360087_66383878
ENSMUSG00000034647.16_27	chr17	-	941	4	FSM	ENSMUSG00000034647.16	ENSMUST00000135136.8	943	4	-5	7	0	-7	multi-exon	FALSE	canonical	3	24	junction_1	25.5734237050888	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTAAACATTTTTTAG	NA	False	NA	NA	False	AATAAA	-23	NA	66384039	66344140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_66344635_66356780_66356929_66359948_66360087_66383878
ENSMUSG00000034647.16_3	chr17	-	5600	5	ISM	ENSMUSG00000034647.16	ENSMUST00000038116.13	10821	13	91810	1807	-2309	508	3prime_fragment	FALSE	canonical	3	24	junction_3	5.8949130612758	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAGAAAACGTAAGAGTGAA	NA	False	NA	NA	False	AATAAA	-14	NA	66292258	66274499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66277333_66279291_66279388_66283015_66283160_66286496_66286596_66289830
ENSMUSG00000034647.16_4	chr17	-	1916	1	ISM	ENSMUSG00000034647.16	ENSMUST00000038116.13	10821	13	107655	1805	2974	510	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAACGTAAGAGTGAAAG	NA	False	NA	NA	False	AATAAA	-16	NA	66276413	66274497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66274500_66276400
ENSMUSG00000034647.16_6	chr17	-	4305	5	NIC	ENSMUSG00000034647.16	novel	10821	13	NA	NA	-3175	510	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	12	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAACGTAAGAGTGAAAG	NA	False	NA	NA	False	AATAAA	-16	NA	66293124	66274497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_66275170_66279291_66279388_66283015_66283160_66286496_66286596_66289830
ENSMUSG00000034647.16_7	chr17	-	8865	12	NIC	ENSMUSG00000034647.16	novel	10821	13	NA	NA	7	469	intron_retention	FALSE	canonical	3	23	junction_5	19.3732370565579	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTGTGCATGTTATTT	NA	False	NA	NA	False	AATAAA	-10	NA	66384027	66274538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_66277333_66279291_66279388_66283015_66283160_66286496_66286596_66289830_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
ENSMUSG00000034647.16_8	chr17	-	6934	13	NIC	ENSMUSG00000034647.16	novel	10821	13	NA	NA	2	508	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	20.8731286586367	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAGAAAACGTAAGAGTGAA	NA	False	NA	NA	False	AATAAA	-14	NA	66384032	66274499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_66275170_66277144_66277333_66279291_66279388_66283015_66283160_66286496_66286596_66289830_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
ENSMUSG00000034648.10_0	chr6	+	3713	2	FSM	ENSMUSG00000034648.10	ENSMUST00000049285.10	3700	2	-17	4	-17	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACACTTGCAATAATGTA	NA	False	NA	NA	False	AATAAA	-21	NA	107506711	107547171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_107507205_107543951
ENSMUSG00000034648.10_1	chr6	+	2621	1	ISM	ENSMUSG00000034648.10	ENSMUST00000049285.10	3700	2	37815	11	37815	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTTAGAACACTTGCAA	NA	False	NA	NA	False	AATAAA	-14	NA	107544543	107547164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_107544500_107547200
ENSMUSG00000034653.12_1	chr18	+	6446	30	FSM	ENSMUSG00000034653.12	ENSMUST00000037763.11	7215	30	746	23	746	-23	multi-exon	FALSE	canonical	3	27	junction_3	9.69634080312122	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATACTTATCAAATGAA	NA	False	NA	7	True	AATAAA	-25	NA	44961558	45022761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_44961986_44963218_44963310_44966088_44966286_44967525_44967726_44970407_44970575_44973251_44973355_44974329_44974487_44977352_44977461_44978746_44978896_44980810_44980947_44983374_44983502_44983702_44983769_44987669_44987849_44988058_44988156_44988237_44988326_44988410_44988492_44990075_44990159_44991254_44991361_44992997_44993118_44993443_44993717_44995671_44995799_44997331_44997538_44997927_44998124_45004516_45004627_45005907_45006201_45010684_45010863_45018189_45018394_45019306_45019490_45020674_45020763_45020855
ENSMUSG00000034653.12_18	chr18	+	5890	28	ISM	ENSMUSG00000034653.12	ENSMUST00000037763.11	7215	30	5314	23	5314	-23	3prime_fragment	FALSE	canonical	3	27	junction_1	9.68700853879705	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATACTTATCAAATGAA	NA	False	NA	7	True	AATAAA	-25	NA	44966126	45022761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_44966286_44967525_44967726_44970407_44970575_44973251_44973355_44974329_44974487_44977352_44977461_44978746_44978896_44980810_44980947_44983374_44983502_44983702_44983769_44987669_44987849_44988058_44988156_44988237_44988326_44988410_44988492_44990075_44990159_44991254_44991361_44992997_44993118_44993443_44993717_44995671_44995799_44997331_44997538_44997927_44998124_45004516_45004627_45005907_45006201_45010684_45010863_45018189_45018394_45019306_45019490_45020674_45020763_45020855
ENSMUSG00000034653.12_21	chr18	+	5370	25	ISM	ENSMUSG00000034653.12	ENSMUST00000037763.11	7215	30	12437	19	-7697	-19	3prime_fragment	FALSE	canonical	3	32	junction_4	9.00453203793635	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACTTATCAAATGAAATAC	NA	False	NA	11	True	AATAAA	-29	NA	44973249	45022765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_44973355_44974329_44974487_44977352_44977461_44978746_44978896_44980810_44980947_44983374_44983502_44983702_44983769_44987669_44987849_44988058_44988156_44988237_44988326_44988410_44988492_44990075_44990159_44991254_44991361_44992997_44993118_44993443_44993717_44995671_44995799_44997331_44997538_44997927_44998124_45004516_45004627_45005907_45006201_45010684_45010863_45018189_45018394_45019306_45019490_45020674_45020763_45020855
ENSMUSG00000034653.12_6	chr18	+	6055	28	NIC	ENSMUSG00000034653.12	novel	7215	30	NA	NA	740	-23	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	12.8447520147719	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATACTTATCAAATGAA	NA	False	NA	7	True	AATAAA	-25	NA	44961552	45022761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_44961986_44963218_44963310_44970407_44970575_44973251_44973355_44974329_44974487_44977352_44977461_44978746_44978896_44980810_44980947_44983374_44983502_44983702_44983769_44987669_44987849_44988058_44988156_44988237_44988326_44988410_44988492_44990075_44990159_44991254_44991361_44992997_44993118_44993443_44993717_44995671_44995799_44997331_44997538_44997927_44998124_45004516_45004627_45005907_45006201_45010684_45010863_45018189_45018394_45019306_45019490_45020674_45020763_45020855
ENSMUSG00000034656.19_38	chr8	+	2529	13	NIC	ENSMUSG00000034656.19	novel	7503	47	NA	NA	-2	-9	combination_of_known_splicesites	FALSE	canonical	3	3	junction_4	13.1751027826478	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAATCCACGGACTTCTG	NA	False	NA	-1	True	NA	NA	NA	85328057	85366866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85328135_85328384_85328451_85328552_85328669_85338226_85338378_85344420_85344527_85356231_85356340_85356453_85356555_85359835_85359946_85360041_85360181_85360278_85360393_85363140_85363328_85365240_85365495_85365866
ENSMUSG00000034656.19_50	chr8	+	1953	7	NIC	ENSMUSG00000034656.19	novel	2941	16	NA	NA	-9210	-5	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	6.02771377334171	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCACGGACTTCTGAACT	NA	False	NA	3	True	NA	NA	NA	85356409	85366870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85356555_85359835_85359946_85360041_85360181_85360278_85360393_85363140_85363328_85365240_85365495_85365866
ENSMUSG00000034656.19_53	chr8	+	1321	2	ISM	ENSMUSG00000034656.19	ENSMUST00000238337.2	2941	16	38018	42	-479	-42	3prime_fragment	FALSE	canonical	3	39	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAACAAAAAAATAAT	NA	False	NA	-34	True	NA	NA	NA	85365140	85366833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_85365495_85365866
ENSMUSG00000034656.19_54	chr8	+	967	1	ISM	ENSMUSG00000034656.19	ENSMUST00000238701.2	8370	49	300599	42	247	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAACAAAAAAATAAT	NA	False	NA	-34	True	NA	NA	NA	85365866	85366833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_85365900_85366800
ENSMUSG00000034656.19_57	chr8	+	1027	2	FSM	ENSMUSG00000034656.19	ENSMUST00000130507.2	249	2	19	-797	19	-15	multi-exon	FALSE	canonical	3	8	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACTTGAATCCACGGA	NA	False	NA	-7	True	NA	NA	NA	85365638	85366860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85365672_85365866
ENSMUSG00000034659.15_0	chr19	-	1910	4	FSM	ENSMUSG00000034659.15	ENSMUST00000038128.15	2188	4	272	6	2	-6	multi-exon	FALSE	canonical	3	149	junction_2	8.28653526310404	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGTCTCTGCTGACAA	NA	False	NA	-9	True	AATAAA	-11	NA	10859093	10848029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10849514_10849950_10850054_10851605_10851851_10859015
ENSMUSG00000034659.15_1	chr19	-	662	1	ISM	ENSMUSG00000034659.15	ENSMUST00000038128.15	2188	4	10676	4	3412	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTCTCTGCTGACAAAC	NA	False	NA	-7	True	AATAAA	-13	NA	10848689	10848027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10848000_10848700
ENSMUSG00000034659.15_3	chr19	-	1832	3	FSM	ENSMUSG00000034659.15	ENSMUST00000138897.2	615	3	251	-1468	251	-6	multi-exon	TRUE	canonical	3	149	junction_2	3.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGTCTCTGCTGACAA	NA	False	NA	-9	True	AATAAA	-11	NA	10851850	10848029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10849514_10849950_10850054_10851605
ENSMUSG00000034663.14_0	chr5	+	4283	16	FSM	ENSMUSG00000034663.14	ENSMUST00000035635.10	7387	16	16	3088	16	-3088	multi-exon	FALSE	canonical	0	0	junction_13	6.52856969191738	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGCCTAGAACAAAAATAC	NA	False	NA	NA	False	NA	NA	NA	97145563	97236638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_97145956_97175689_97175809_97178995_97179102_97184754_97184898_97186279_97186402_97188531_97188614_97192893_97193027_97200955_97201060_97202710_97202791_97204724_97204886_97209264_97209516_97211303_97211403_97212687_97212873_97216257_97216416_97222491_97222603_97234601
ENSMUSG00000034663.14_2	chr5	+	3223	14	FSM	ENSMUSG00000034663.14	ENSMUST00000112974.6	3244	14	16	5	16	-5	multi-exon	TRUE	canonical	0	0	junction_13	5.94053371578702	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCACATTTTTGTATGGT	NA	False	NA	NA	False	ATTAAA	-11	NA	97145563	97217503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_97145956_97175689_97175809_97178995_97179102_97184754_97184898_97186279_97186402_97188531_97188614_97192893_97193027_97200955_97201060_97202710_97202791_97204724_97204886_97209264_97209516_97211303_97211403_97212687_97212873_97216257
ENSMUSG00000034663.14_9	chr5	+	4166	1	ISM	ENSMUSG00000034663.14	ENSMUST00000035635.10	7387	16	90009	4	90009	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCAATGTCTTTGGAGT	NA	False	NA	NA	False	AATAAA	-25	NA	97235556	97239722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_97235600_97239700
ENSMUSG00000034664.14_5	chr11	-	2751	26	ISM	ENSMUSG00000034664.14	ENSMUST00000103086.4	3437	30	2706	18	22	-11	3prime_fragment	FALSE	canonical	0	0	junction_4	1.63266653055668	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGATATCCGCCATGCT	7245	False	NA	NA	False	AATAAA	-8	NA	102358003	102344140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102344344_102346389_102346507_102346724_102346827_102347055_102347173_102347790_102347911_102348010_102348155_102348285_102348386_102348597_102348679_102348938_102349019_102349167_102349261_102350698_102350847_102350963_102351032_102351341_102351468_102351574_102351727_102351815_102351872_102351954_102352060_102352143_102352190_102352462_102352646_102355765_102355978_102356130_102356184_102356322_102356377_102356536_102356581_102356715_102356764_102357082_102357212_102357302_102357349_102357879
ENSMUSG00000034667.9_0	chr10	-	3845	25	FSM	ENSMUSG00000034667.9	ENSMUST00000218004.2	6005	25	-87	2247	-87	-8	multi-exon	FALSE	canonical	3	537	junction_24	166.742560845221	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACACCAAGTCTTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	121462324	121425531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
ENSMUSG00000034667.9_1	chr10	-	3873	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-140	-8	intron_retention	FALSE	canonical	0	0	junction_24	266.812928638942	798	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACACCAAGTCTTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	121462377	121425531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462034
ENSMUSG00000034667.9_10	chr10	-	1914	1	ISM	ENSMUSG00000034667.9	ENSMUST00000039810.8	5992	25	37018	5	11515	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTCATTGGAGTGGGC	1367	False	NA	-13	True	AATAAA	-11	NA	121425203	121423289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_121423300_121425200
ENSMUSG00000034667.9_35	chr10	-	3717	26	NIC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-79	-8	combination_of_known_junctions	FALSE	canonical	3	151	junction_17	270.192008764138	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACACCAAGTCTTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	121462316	121425531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447459_121447578_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
ENSMUSG00000034667.9_9	chr10	-	3714	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-2479	-4	intron_retention	FALSE	canonical	3	239	junction_24	221.439792262417	215	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCAAGTCTTTTCCGGAG	9372	False	NA	NA	False	AATAAA	-17	NA	121464716	121425527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121464536
ENSMUSG00000034673.15_11	chr17	+	1288	5	ISM	ENSMUSG00000034673.15	ENSMUST00000183827.8	1186	10	1876	-257	-850	66	intron_retention	FALSE	canonical	3	29	junction_1	2.38484800354236	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCACTTGAGAAGTAAGAG	NA	False	NA	32	True	AATAAA	-22	NA	34813583	34815647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34813692_34813774_34813929_34814238_34814328_34814601_34814689_34814797
ENSMUSG00000034673.15_2	chr17	+	3049	9	FSM	ENSMUSG00000034673.15	ENSMUST00000038149.13	3068	9	13	6	13	-6	multi-exon	FALSE	canonical	3	20	junction_1	5.02338282435253	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGGGTTTAGTTGAGAT	NA	False	NA	1	True	AATAAA	-14	NA	34811249	34816368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34811749_34812545_34812620_34812840_34813089_34813211_34813403_34813555_34813692_34813774_34813929_34814238_34814328_34814601_34814689_34814797
ENSMUSG00000034673.15_6	chr17	+	885	2	FSM	ENSMUSG00000034673.15	ENSMUST00000173229.2	659	2	210	-436	210	56	multi-exon	FALSE	canonical	3	31	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGTTTACCCACTTGA	NA	False	NA	22	True	AATAAA	-12	NA	34814643	34815637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34814689_34814797
ENSMUSG00000034673.15_7	chr17	+	574	1	ISM	ENSMUSG00000034673.15	ENSMUST00000038149.13	3068	9	4564	0	1367	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTAGTTGAGATTTTTTT	NA	False	NA	7	True	AATAAA	-20	NA	34815800	34816374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34815800_34816400
ENSMUSG00000034674.19_2	chr10	+	2970	10	FSM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	4	528	4	-53	multi-exon	FALSE	canonical	0	0	junction_9	366.010456573289	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTTAAACATGCGCAGT	NA	False	NA	NA	False	ATTAAA	-9	NA	82465696	82486105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_82465873_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
ENSMUSG00000034674.19_28	chr10	+	3422	9	ISM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	30	549	13	-74	intron_retention	FALSE	canonical	3	474	junction_8	263.237535317439	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTTCTCATTAAATAATACT	NA	False	NA	NA	False	NA	NA	NA	82465722	82486084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_82465873_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786
ENSMUSG00000034674.19_29	chr10	+	1678	10	NIC	ENSMUSG00000034674.19	novel	3502	10	NA	NA	3	102	combination_of_known_junctions	FALSE	canonical	3	97	junction_9	344.226023937115	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAACCGGTTTTCTCTGA	NA	False	NA	NA	False	NA	NA	NA	82465695	82484815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_82465873_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484414
ENSMUSG00000034674.19_37	chr10	+	1593	1	ISM	ENSMUSG00000034674.19	ENSMUST00000092266.11	2959	10	18858	46	1781	-46	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATGCGCAGTCTGAGCG	NA	False	NA	NA	False	ATTAAA	-16	NA	82484519	82486112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_82484500_82486100
ENSMUSG00000034674.19_7	chr10	+	3422	10	FSM	ENSMUSG00000034674.19	ENSMUST00000092266.11	2959	10	11	-474	11	-1	multi-exon	FALSE	canonical	0	0	junction_9	369.308195427446	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCGGCTAACTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	82465672	82486632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_82465774_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
ENSMUSG00000034675.18_1	chr13	-	2616	14	FSM	ENSMUSG00000034675.18	ENSMUST00000109923.9	2940	14	31	293	-14	222	multi-exon	FALSE	canonical	3	54	junction_13	5.80246835866034	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGGGACCCTTCCCCTT	NA	False	NA	-21	True	AATAAA	-19	NA	55635893	55621534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55622107_55622268_55622372_55622672_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963_55630111_55630225_55630301_55630504_55630618_55631199_55631256_55635675
ENSMUSG00000034675.18_2	chr13	-	2614	14	FSM	ENSMUSG00000034675.18	ENSMUST00000109921.9	2378	14	-14	-222	-9	222	multi-exon	FALSE	canonical	3	24	junction_2	11.9649389180894	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGGGACCCTTCCCCTT	NA	False	NA	-21	True	AATAAA	-19	NA	55635888	55621534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55622107_55622268_55622375_55622672_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963_55630111_55630225_55630301_55630504_55630618_55631199_55631256_55635675
ENSMUSG00000034681.18_0	chr17	+	1907	9	FSM	ENSMUSG00000034681.18	ENSMUST00000163717.2	1920	9	12	1	-7	-1	multi-exon	FALSE	canonical	3	410	junction_1	446.592917963328	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTGAGTGCTGGTTTTA	925	False	NA	NA	False	AATAAA	-17	NA	24633660	24644868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24633709_24634014_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUSG00000034681.18_1	chr17	+	1604	7	FSM	ENSMUSG00000034681.18	ENSMUST00000115371.9	1646	7	41	1	-7	-1	multi-exon	FALSE	canonical	3	629	junction_1	362.779738807019	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTGAGTGCTGGTTTTA	925	False	NA	NA	False	AATAAA	-17	NA	24633660	24644868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24633709_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUSG00000034681.18_2	chr17	+	1784	8	FSM	ENSMUSG00000034681.18	ENSMUST00000088512.13	1816	8	24	8	-7	-2	multi-exon	FALSE	canonical	3	697	junction_1	319.314188567323	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATTGAGTGCTGGTTTT	925	False	NA	NA	False	AATAAA	-16	NA	24633660	24644867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUSG00000034681.18_7	chr17	+	1977	8	ISM	ENSMUSG00000034681.18	ENSMUST00000163717.2	1920	9	247	2	228	-2	3prime_fragment	FALSE	canonical	3	495	junction_1	374.654888816743	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATTGAGTGCTGGTTTT	1160	False	NA	NA	False	AATAAA	-16	NA	24633895	24644867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUSG00000034681.18_9	chr17	+	1724	8	FSM	ENSMUSG00000034681.18	ENSMUST00000234977.2	1769	8	37	8	-6	-2	multi-exon	FALSE	canonical	3	75	junction_2	570.995335768505	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATTGAGTGCTGGTTTT	926	False	NA	NA	False	AATAAA	-16	NA	24633661	24644867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24633709_24634014_24634137_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUSG00000034684.13_0	chr9	-	2950	18	NIC	ENSMUSG00000034684.13	novel	3395	18	NA	NA	60	83	combination_of_known_junctions	TRUE	canonical	2	8	junction_13	3.78121380705605	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATACCCTACCCCTGCAAA	9894	False	NA	NA	False	NA	NA	NA	107587158	107559533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107560039_107560758_107560893_107561171_107561240_107561420_107561579_107561748_107561791_107561886_107561976_107562523_107562747_107564388_107564534_107564688_107564759_107564928_107565044_107565147_107565288_107565428_107565549_107566884_107566979_107569366_107569487_107569587_107569651_107569754_107569916_107582629_107582791_107586616
ENSMUSG00000034684.13_1	chr9	-	3041	19	NIC	ENSMUSG00000034684.13	novel	2383	18	NA	NA	60	81	combination_of_known_junctions	FALSE	canonical	1	3	junction_14	4.82438507563655	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATACCCTACCCCTGCA	9894	False	NA	NA	False	NA	NA	NA	107587158	107559535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107560039_107560758_107560893_107561171_107561240_107561420_107561579_107561748_107561791_107561886_107561976_107562523_107562747_107564388_107564534_107564688_107564759_107564928_107565044_107565147_107565288_107565428_107565549_107566884_107566979_107568554_107568648_107569366_107569487_107569587_107569651_107569754_107569916_107582629_107582791_107586616
ENSMUSG00000034684.13_10	chr9	-	2124	11	NIC	ENSMUSG00000034684.13	novel	2972	17	NA	NA	16	434	combination_of_known_junctions	FALSE	canonical	2	8	junction_6	3.48711915483254	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTTGTTGTTGTCT	9850	False	NA	NA	False	NA	NA	NA	107587202	107564039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107564534_107564688_107564759_107564928_107565044_107565147_107565288_107565428_107565549_107566884_107566979_107569366_107569487_107569587_107569651_107569754_107569916_107582629_107582791_107586616
ENSMUSG00000034684.13_11	chr9	-	4492	10	NIC	ENSMUSG00000034684.13	novel	2972	17	NA	NA	36	434	intron_retention	FALSE	canonical	3	10	junction_2	2.9606472432165	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTTGTTGTTGTCT	9870	False	NA	NA	False	NA	NA	NA	107587182	107564039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107564534_107564688_107564759_107564928_107565044_107565147_107565288_107565428_107565549_107566884_107569487_107569587_107569651_107569754_107569916_107582629_107582791_107586616
ENSMUSG00000034684.13_6	chr9	-	2902	17	NIC	ENSMUSG00000034684.13	novel	2972	17	NA	NA	41	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_12	3.60338382634989	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTCTCATTCATTGT	9875	False	NA	NA	False	ATTAAA	-22	NA	107587177	107560320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107560893_107561171_107561240_107561420_107561579_107561748_107561791_107561886_107561976_107562523_107562747_107564388_107564534_107564688_107564759_107564928_107565044_107565147_107565288_107565428_107565549_107566884_107566979_107569366_107569487_107569587_107569651_107569754_107569916_107582629_107582791_107586616
ENSMUSG00000034685.5_1	chr11	-	3058	8	FSM	ENSMUSG00000034685.5	ENSMUST00000049057.5	3118	8	56	4	-32	-4	multi-exon	FALSE	canonical	3	9	junction_1	3.01695886884898	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCTCTGTCTTTCTCTC	NA	False	NA	-8	True	AATACA	-14	NA	102338452	102327810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102329736_102330257_102330385_102330485_102330603_102330699_102330880_102330961_102331121_102334475_102334569_102334789_102335018_102338223
ENSMUSG00000034690.14_0	chr7	+	3601	10	FSM	ENSMUSG00000034690.14	ENSMUST00000037728.13	3615	10	11	3	11	-3	multi-exon	FALSE	canonical	2	7	junction_4	4.84067131350933	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCTGATGACTTCTAAT	2988	False	NA	18	True	AATAAA	-14	NA	6048170	6108146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6048221_6063527_6063871_6068377_6069951_6075560_6075720_6076110_6076276_6087542_6087711_6095465_6095637_6101828_6102000_6103751_6103923_6107516
ENSMUSG00000034690.14_1	chr7	+	3708	11	NNC	ENSMUSG00000034690.14	novel	3615	10	NA	NA	12	-3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	5.98414572015087	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCTGATGACTTCTAAT	2989	False	NA	18	True	AATAAA	-14	NA	6048171	6108146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_6048221_6062986_6063095_6063527_6063871_6068377_6069951_6075560_6075720_6076110_6076276_6087542_6087711_6095465_6095637_6101828_6102000_6103751_6103923_6107516
ENSMUSG00000034690.14_2	chr7	+	2503	6	ISM	ENSMUSG00000034690.14	ENSMUST00000037728.13	3615	10	34	20371	34	16903	5prime_fragment	FALSE	canonical	2	7	junction_4	5.60713830755047	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGTCTGCCAGTTGTG	3011	False	NA	NA	False	AATATA	-11	NA	6048193	6087778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_6048221_6063527_6063871_6068377_6069951_6075560_6075720_6076110_6076276_6087542
ENSMUSG00000034701.10_0	chr2	-	2602	2	FSM	ENSMUSG00000034701.10	ENSMUST00000041099.5	2729	2	1	126	1	-126	multi-exon	FALSE	canonical	2	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCAAAACAATTGTTTC	NA	False	NA	NA	False	AATAAA	-11	NA	79287094	79282990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_79285393_79286894
ENSMUSG00000034706.17_0	chr11	+	2863	13	FSM	ENSMUSG00000034706.17	ENSMUST00000069325.14	2874	13	5	6	1	-6	multi-exon	FALSE	canonical	1	1	junction_1	2.40947204913349	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCAGTACTTGTCATGTG	NA	False	NA	NA	False	ATTAAA	-14	NA	114618242	114648709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_114618602_114623718_114623922_114625353_114625516_114626690_114626813_114629441_114629585_114631242_114631357_114635126_114635267_114635880_114636004_114641163_114641388_114642611_114642748_114643682_114643830_114645060_114645289_114647947
ENSMUSG00000034707.8_0	chr10	+	3836	14	FSM	ENSMUSG00000034707.8	ENSMUST00000040344.7	3855	14	19	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	13.2731878157773	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCAATGTGTCCTTTGT	NA	False	NA	4	True	ATTAAA	-16	NA	121201013	121233150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_121201264_121207048_121207109_121210262_121210470_121212112_121212179_121212540_121212640_121213926_121214095_121216022_121216106_121217077_121217197_121219244_121219349_121224005_121224108_121226528_121226637_121227275_121227387_121228585_121228747_121230952
ENSMUSG00000034707.8_14	chr10	+	3606	12	ISM	ENSMUSG00000034707.8	ENSMUST00000040344.7	3855	14	9188	0	-65	0	3prime_fragment	FALSE	canonical	3	144	junction_2	10.1655714534504	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCAATGTGTCCTTTGT	7432	False	NA	4	True	ATTAAA	-16	NA	121210182	121233150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_121210470_121212112_121212179_121212540_121212640_121213926_121214095_121216022_121216106_121217077_121217197_121219244_121219349_121224005_121224108_121226528_121226637_121227275_121227387_121228585_121228747_121230952
ENSMUSG00000034707.8_21	chr10	+	1564	1	ISM	ENSMUSG00000034707.8	ENSMUST00000040344.7	3855	14	30592	0	12567	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCAATGTGTCCTTTGT	NA	False	NA	4	True	ATTAAA	-16	NA	121231586	121233150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_121231600_121233200
ENSMUSG00000034708.13_0	chr11	+	2144	13	FSM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	185	2	-11	-2	multi-exon	FALSE	canonical	3	528	junction_1	53.84932682959	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAGTATCTGATTTGTT	4323	False	NA	13	True	AATAAA	-15	NA	102321332	102327631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
ENSMUSG00000034708.13_22	chr11	+	2112	12	ISM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	2641	2	178	-2	3prime_fragment	FALSE	canonical	3	581	junction_5	45.6110034571005	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAGTATCTGATTTGTT	6779	False	NA	13	True	AATAAA	-15	NA	102323788	102327631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
ENSMUSG00000034709.9_20	chr17	+	1522	8	ISM	ENSMUSG00000034709.9	ENSMUST00000038551.8	3141	22	42512	2	-2446	0	3prime_fragment	FALSE	canonical	3	73	junction_2	5.2333311668612	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTTCGGTCTGTGACAG	NA	False	NA	14	True	AATAAA	-15	NA	88880057	88895793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_88880184_88882619_88882713_88884565_88884809_88886209_88886243_88887862_88887980_88889842_88889942_88891280_88891410_88895111
ENSMUSG00000034709.9_22	chr17	+	866	3	ISM	ENSMUSG00000034709.9	ENSMUST00000185400.2	1112	5	3727	2	3727	-2	3prime_fragment	FALSE	canonical	3	83	junction_2	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTTTCGGTCTGTGAC	NA	False	NA	12	True	AATAAA	-13	NA	88889884	88895791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_88889942_88891280_88891410_88895111
ENSMUSG00000034709.9_3	chr17	+	3026	22	FSM	ENSMUSG00000034709.9	ENSMUST00000038551.8	3141	22	111	4	13	-2	multi-exon	FALSE	canonical	3	56	junction_5	9.91871727497827	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTTTCGGTCTGTGAC	NA	False	NA	12	True	AATAAA	-13	NA	88837656	88895791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_88837747_88850272_88850342_88852748_88852896_88854995_88855098_88856921_88857087_88857218_88857278_88858089_88858185_88862277_88862331_88863009_88863160_88866016_88866119_88866204_88866294_88869536_88869674_88873068_88873162_88876507_88876636_88880030_88880184_88882619_88882713_88884565_88884809_88886209_88886243_88887862_88887980_88889842_88889942_88891280_88891410_88895111
ENSMUSG00000034714.10_0	chr11	+	3426	14	FSM	ENSMUSG00000034714.10	ENSMUST00000045779.6	3486	14	58	2	-27	-2	multi-exon	TRUE	canonical	3	173	junction_11	15.0937896237857	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGTGCAGCTGAGTCAC	NA	False	NA	9	True	AATAAA	-12	NA	114566314	114611801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_114566499_114577219_114577393_114581064_114581177_114587414_114587636_114592606_114592703_114593061_114593135_114598161_114598232_114598504_114598561_114599242_114599336_114599594_114599688_114600868_114601012_114601636_114601823_114602585_114602665_114609954
ENSMUSG00000034714.10_25	chr11	+	1436	1	ISM	ENSMUSG00000034714.10	ENSMUST00000045779.6	3486	14	44109	2	44024	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGTGCAGCTGAGTCAC	NA	False	NA	9	True	AATAAA	-12	NA	114610365	114611801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_114610400_114611800
ENSMUSG00000034723.12_0	chr2	-	5151	8	FSM	ENSMUSG00000034723.12	ENSMUST00000038228.11	5488	8	14	323	1	-323	multi-exon	FALSE	canonical	3	29	junction_5	5.36808406515884	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGAATTTTCTTCTG	2706	False	NA	NA	False	CATAAA	-37	NA	134486051	134436427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_134440786_134441929_134441994_134442807_134442910_134451450_134451497_134462474_134462604_134463307_134463354_134481641_134481758_134485761
ENSMUSG00000034723.12_1	chr2	-	2943	1	ISM	ENSMUSG00000034723.12	ENSMUST00000038228.11	5488	8	46695	323	46591	-323	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGAATTTTCTTCTG	NA	False	NA	NA	False	CATAAA	-37	NA	134439370	134436427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_134436400_134439400
ENSMUSG00000034724.19_0	chr5	-	4458	1	ISM	ENSMUSG00000034724.19	ENSMUST00000155901.8	8564	12	87193	7	12136	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGCACACTGGTCTTGGG	NA	False	NA	-8	True	AATAAA	-13	NA	96222656	96218198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_96218200_96222700
ENSMUSG00000034724.19_1	chr5	-	4285	12	FSM	ENSMUSG00000034724.19	ENSMUST00000155901.8	8564	12	-540	4819	-540	424	multi-exon	FALSE	canonical	3	19	junction_9	8.72253659368072	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAACAAAAGAAACCCT	NA	False	NA	NA	False	AATAAA	-33	NA	96310389	96223010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000_96234153_96239442_96239598_96242019_96242178_96246103_96246173_96254074_96254165_96276801_96276888_96278917_96279105_96281869_96281992_96309795
ENSMUSG00000034724.19_12	chr5	-	3305	8	ISM	ENSMUSG00000034724.19	ENSMUST00000036646.14	3314	12	55470	-466	-19352	453	3prime_fragment	FALSE	canonical	3	24	junction_5	7.47239818892687	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCTCAGTGTTCAGGT	NA	False	NA	NA	False	AATAAA	-27	NA	96254144	96222981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000_96234153_96239442_96239598_96242019_96242178_96246103_96246173_96254074
ENSMUSG00000034724.19_19	chr5	-	2874	5	ISM	ENSMUSG00000034724.19	ENSMUST00000036646.14	3314	12	70105	-420	-4717	407	3prime_fragment	FALSE	canonical	3	31	junction_1	5.04975246918104	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTAAAGTACCTGAATAAA	NA	False	NA	NA	False	AATAAA	-16	NA	96239509	96223027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000_96234153_96239442
ENSMUSG00000034724.19_20	chr5	-	4623	4	FSM	ENSMUSG00000034724.19	ENSMUST00000152490.8	3040	4	695	-2278	695	2278	multi-exon	FALSE	canonical	3	31	junction_1	4.78423336480244	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTGTGCTGTTTAAAAA	NA	False	NA	-17	True	ATTAAA	-15	NA	96234097	96221156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000
ENSMUSG00000034724.19_4	chr5	-	4372	12	FSM	ENSMUSG00000034724.19	ENSMUST00000113005.9	3170	12	-67	-1135	49	974	multi-exon	TRUE	canonical	3	6	junction_11	10.9800721068249	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATTCATTATCCTGTG	NA	False	NA	NA	False	NA	NA	NA	96309681	96222460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000_96234153_96239442_96239598_96242019_96242178_96246103_96246173_96254074_96254165_96276801_96276888_96278917_96279105_96281869_96281992_96309550
ENSMUSG00000034724.19_6	chr5	-	3684	11	ISM	ENSMUSG00000034724.19	ENSMUST00000113005.9	3170	12	27643	-598	-5084	437	3prime_fragment	FALSE	canonical	3	19	junction_9	8.08455317256309	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCTTGATGACAGATTT	NA	False	NA	NA	False	AATAAA	-11	NA	96281971	96222997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000_96234153_96239442_96239598_96242019_96242178_96246103_96246173_96254074_96254165_96276801_96276888_96278917_96279105_96281869
ENSMUSG00000034724.19_7	chr5	-	4329	12	NIC	ENSMUSG00000034724.19	novel	8564	12	NA	NA	-130	882	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	12.6836916178947	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACAGCTTAAGTTTATTT	NA	False	NA	NA	False	AATAAA	-17	NA	96309979	96222552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000_96234153_96239442_96239598_96242019_96242178_96246103_96246173_96254074_96254165_96276801_96276888_96278917_96279101_96281869_96281992_96309795
ENSMUSG00000034724.19_8	chr5	-	3874	12	NIC	ENSMUSG00000034724.19	novel	8564	12	NA	NA	25	446	combination_of_known_junctions	TRUE	canonical	2	2	junction_11	11.8265704494178	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACAGATTTTCCTCAGTG	NA	False	NA	NA	False	AATAAA	-20	NA	96309381	96222988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000_96234153_96239442_96239598_96242019_96242178_96246103_96246173_96254074_96254165_96276801_96276888_96278917_96279105_96281869_96281992_96309220
ENSMUSG00000034729.17_0	chr17	+	1005	7	FSM	ENSMUSG00000034729.17	ENSMUST00000120737.8	1017	7	11	1	0	0	multi-exon	FALSE	canonical	3	977	junction_2	314.646892034018	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGGCTGGTTTTGTTT	7148	False	NA	4	True	NA	NA	NA	47679822	47689603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47679880_47683351_47683417_47683500_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUSG00000034729.17_2	chr17	+	1009	7	FSM	ENSMUSG00000034729.17	ENSMUST00000119945.8	1018	7	6	3	-1	0	multi-exon	FALSE	canonical	3	774	junction_2	381.394116659162	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGGCTGGTTTTGTTT	7147	False	NA	4	True	NA	NA	NA	47679821	47689603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUSG00000034730.18_0	chr15	+	4231	24	NIC	ENSMUSG00000034730.18	novel	6228	31	NA	NA	-41	1950	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.25651883670852	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGGCTGGTCTCTTCTTT	NA	False	NA	NA	False	AATACA	-13	NA	74388245	74447918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_74388716_74400778_74401790_74410146_74410309_74411051_74411163_74411555_74411721_74412244_74412410_74412675_74412841_74413378_74413544_74413637_74413740_74415104_74415212_74415356_74415552_74416125_74416195_74416793_74416903_74419468_74419613_74420120_74420197_74420380_74420484_74421862_74421907_74435808_74435951_74441717_74441822_74443261_74443365_74443923_74444075_74444655_74444726_74445950_74446018_74447687
ENSMUSG00000034730.18_21	chr15	+	816	2	FSM	ENSMUSG00000034730.18	ENSMUST00000230935.2	752	2	432	-496	432	3	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAATTAAAAACCCAG	NA	False	NA	-14	True	NA	NA	NA	74460204	74461295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_74460261_74460535
ENSMUSG00000034730.18_5	chr15	+	2745	15	FSM	ENSMUSG00000034730.18	ENSMUST00000185682.7	2744	15	-22	21	-22	0	multi-exon	FALSE	canonical	1	1	junction_1	5.72899891529302	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAGAATTAAAAACC	NA	False	NA	-17	True	NA	NA	NA	74435618	74461292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_74435731_74435808_74435951_74441717_74441822_74443261_74443365_74443923_74444075_74444655_74444726_74445950_74446018_74447687_74447774_74452413_74452586_74454740_74454837_74456226_74456267_74458605_74459307_74459955_74459992_74460152_74460261_74460535
ENSMUSG00000034730.18_7	chr15	+	1213	3	ISM	ENSMUSG00000034730.18	ENSMUST00000187639.2	2158	10	13665	9	-116	-8	3prime_fragment	FALSE	canonical	3	15	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCCAGCTTTGTAGTC	NA	False	NA	-4	True	AATAAA	-8	NA	74459656	74461305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_74459992_74460152_74460261_74460535
ENSMUSG00000034730.18_8	chr15	+	1332	1	NIC	ENSMUSG00000034730.18	novel	6228	31	NA	NA	188	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAGAATTAAAAACC	NA	False	NA	-17	True	NA	NA	NA	74459960	74461292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_74460000_74461300
ENSMUSG00000034730.18_9	chr15	+	3641	23	ISM	ENSMUSG00000034730.18	ENSMUST00000042035.16	6228	31	12864	13395	-11338	1950	internal_fragment	FALSE	non_canonical	0	0	junction_5	3.22855288310541	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGGCTGGTCTCTTCTTT	NA	False	NA	NA	False	AATACA	-13	NA	74400907	74447918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_74401790_74410146_74410309_74411051_74411163_74411555_74411721_74412244_74412410_74412666_74412841_74413378_74413544_74413637_74413740_74415104_74415212_74415356_74415552_74416125_74416195_74416793_74416903_74419468_74419613_74420120_74420197_74420380_74420484_74421862_74421907_74435808_74435951_74441717_74441822_74443261_74443365_74443923_74444075_74444655_74444726_74445950_74446018_74447687
ENSMUSG00000034731.12_0	chr14	-	3175	1	ISM	ENSMUSG00000034731.12	ENSMUST00000226342.3	15257	30	170247	605	66745	-605	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTGAGGCCTGCACTC	NA	False	NA	-7	True	AATAAA	-14	NA	78799969	78796794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_78796800_78800000
ENSMUSG00000034731.12_18	chr14	-	3109	1	ISM	ENSMUSG00000034731.12	ENSMUST00000226342.3	15257	30	165141	5777	61639	5082	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTATTATGTTGTGAAA	NA	False	NA	NA	False	TATAAA	-10	NA	78805075	78801966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_78802000_78805100
ENSMUSG00000034731.12_3	chr14	-	4061	32	NNC	ENSMUSG00000034731.12	novel	15257	30	NA	NA	22	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_31	8.609580124905	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGCCTGTTGTTGTGATT	NA	False	NA	-4	True	AATACA	-15	NA	78970194	78807437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_78807598_78813326_78813458_78814888_78814998_78816128_78816249_78818918_78819012_78821814_78821921_78823032_78823197_78824559_78824695_78824962_78825077_78827313_78827422_78832586_78832684_78832816_78832928_78834084_78834203_78836447_78836580_78840465_78840574_78841716_78841991_78844340_78844441_78846948_78847035_78850294_78850380_78853666_78853807_78853918_78854028_78855962_78856123_78857211_78857315_78861816_78861943_78862245_78862353_78865126_78865260_78865500_78865606_78889120_78889202_78891125_78891237_78962346_78962542_78969797_78969921_78969977
ENSMUSG00000034731.12_5	chr14	-	4080	32	NNC	ENSMUSG00000034731.12	novel	15257	30	NA	NA	10	6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_31	8.609580124905	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTTGTTGTGATTT	NA	False	NA	-3	True	AATACA	-16	NA	78970206	78807436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_78807598_78813326_78813458_78814888_78814998_78816128_78816249_78818918_78819012_78821814_78821921_78823032_78823197_78824559_78824695_78824962_78825077_78827313_78827422_78832586_78832684_78832816_78832928_78834084_78834203_78836447_78836580_78840465_78840574_78841716_78841991_78844340_78844441_78846948_78847035_78850294_78850380_78853666_78853807_78853918_78854028_78855962_78856123_78857211_78857315_78861816_78861943_78862245_78862353_78865126_78865260_78865500_78865606_78889120_78889202_78891125_78891237_78962346_78962542_78969797_78969921_78969971
ENSMUSG00000034744.14_0	chr6	+	1161	10	FSM	ENSMUSG00000034744.14	ENSMUST00000113851.8	1323	10	162	0	-18	0	multi-exon	FALSE	canonical	3	32	junction_1	71.6054001687955	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAGGGTGTCATCTTCCA	9466	False	NA	11	True	AATAAA	-19	NA	83772171	83779536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83772231_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ENSMUSG00000034744.14_14	chr6	+	1263	10	FSM	ENSMUSG00000034744.14	ENSMUST00000146117.8	1049	10	6	-220	6	0	multi-exon	FALSE	canonical	3	35	junction_1	70.680816193489	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAGGGTGTCATCTTCCA	9490	False	NA	11	True	AATAAA	-19	NA	83772195	83779536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83772357_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ENSMUSG00000034744.14_4	chr6	+	1192	10	FSM	ENSMUSG00000034744.14	ENSMUST00000037376.14	1405	10	212	1	-14	1	multi-exon	FALSE	canonical	3	202	junction_1	21.8281729836116	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGGGTGTCATCTTCCAT	9470	False	NA	12	True	AATAAA	-20	NA	83772175	83779537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83772265_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ENSMUSG00000034748.17_0	chr10	-	1644	8	FSM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	245	2	14	-2	multi-exon	FALSE	canonical	3	197	junction_1	20.6723713873254	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTTGTTACATTTATG	9903	False	NA	-13	True	AATAAA	-23	NA	81463386	81457622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
ENSMUSG00000034748.17_2	chr10	-	2018	8	NIC	ENSMUSG00000034748.17	novel	1667	9	NA	NA	-25	-1	intron_retention	FALSE	canonical	3	27	junction_7	72.5548349983146	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTACATTTATGT	9684	False	NA	-12	True	AATAAA	-24	NA	81463179	81457621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81462725
ENSMUSG00000034748.17_5	chr10	-	1342	9	NIC	ENSMUSG00000034748.17	novel	1667	9	NA	NA	-12	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	72.0017360901805	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTACATTTATGT	9877	False	NA	-12	True	AATAAA	-24	NA	81463412	81457621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_81457913_81458241_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
ENSMUSG00000034748.17_6	chr10	-	1650	7	ISM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	1094	1	554	-1	3prime_fragment	FALSE	canonical	3	197	junction_1	19.2353840616713	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTACATTTATGT	1920	False	NA	-12	True	AATAAA	-24	NA	81462537	81457621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323
ENSMUSG00000034751.18_1	chr13	-	2189	1	ISM	ENSMUSG00000034751.18	ENSMUST00000166726.8	5968	27	599507	11	36384	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATGAAAGATGACTTGCG	NA	False	NA	-10	True	AATAAA	-6	NA	102871193	102869004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_102869000_102871200
ENSMUSG00000034751.18_4	chr13	-	1296	3	NIC	ENSMUSG00000034751.18	novel	249	2	NA	NA	-1	394	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCAGTTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	103470969	103304130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_103304647_103307910_103308065_103470343
ENSMUSG00000034757.16_0	chr11	+	1897	4	FSM	ENSMUSG00000034757.16	ENSMUST00000036376.13	1939	4	40	2	20	-2	multi-exon	FALSE	canonical	3	77	junction_1	22.5437845585479	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGAGCCTCTTTGTGACT	NA	False	NA	14	True	AATAAA	-16	NA	102175796	102180061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102175915_102176489_102176545_102178133_102178698_102178901
ENSMUSG00000034757.16_1	chr11	+	4049	1	NIC	ENSMUSG00000034757.16	novel	1939	4	NA	NA	-9	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGAGCCTCTTTGTGACT	NA	False	NA	14	True	AATAAA	-16	NA	102176012	102180061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102176000_102180100
ENSMUSG00000034757.16_2	chr11	+	1851	3	FSM	ENSMUSG00000034757.16	ENSMUST00000100387.11	1876	3	23	2	11	-2	multi-exon	FALSE	canonical	3	43	junction_1	44	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGAGCCTCTTTGTGACT	NA	False	NA	14	True	AATAAA	-16	NA	102175787	102180061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102175915_102178133_102178698_102178901
ENSMUSG00000034757.16_4	chr11	+	4070	2	NIC	ENSMUSG00000034757.16	novel	2249	3	NA	NA	11	-2	intron_retention	FALSE	canonical	3	131	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGAGCCTCTTTGTGACT	NA	False	NA	14	True	AATAAA	-16	NA	102175787	102180061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102178698_102178901
ENSMUSG00000034757.16_6	chr11	+	2246	3	FSM	ENSMUSG00000034757.16	ENSMUST00000156326.2	2249	3	1	2	1	-2	multi-exon	FALSE	canonical	3	94	junction_1	18.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGAGCCTCTTTGTGACT	NA	False	NA	14	True	AATAAA	-16	NA	102176022	102180061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102176545_102178133_102178698_102178901
ENSMUSG00000034758.13_0	chr10	-	1988	14	FSM	ENSMUSG00000034758.13	ENSMUST00000072020.9	2015	14	27	0	2	0	multi-exon	FALSE	canonical	3	36	junction_10	15.2183321404185	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTGTCCTTTACCCA	NA	False	NA	-15	True	NA	NA	NA	81436707	81426738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
ENSMUSG00000034758.13_1	chr10	-	2277	13	NIC	ENSMUSG00000034758.13	novel	2015	14	NA	NA	2	0	intron_retention	FALSE	canonical	3	36	junction_9	15.8348683466442	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTGTCCTTTACCCA	NA	False	NA	-15	True	NA	NA	NA	81436707	81426738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
ENSMUSG00000034758.13_11	chr10	-	1748	11	NIC	ENSMUSG00000034758.13	novel	1972	11	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	2	14	junction_8	22.2405035914208	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTGTCCTTTACCCA	NA	False	NA	-15	True	NA	NA	NA	81433184	81426738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431210_81431313_81431390_81431678_81432090_81433129
ENSMUSG00000034758.13_2	chr10	-	1771	11	NIC	ENSMUSG00000034758.13	novel	2015	14	NA	NA	2	0	combination_of_known_junctions	TRUE	canonical	3	25	junction_10	15.7445228571716	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTGTCCTTTACCCA	NA	False	NA	-15	True	NA	NA	NA	81433177	81426738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81433129
ENSMUSG00000034758.13_4	chr10	-	1958	14	FSM	ENSMUSG00000034758.13	ENSMUST00000142948.8	1961	14	2	1	2	0	multi-exon	FALSE	canonical	2	14	junction_8	19.8357158000858	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTGTCCTTTACCCA	NA	False	NA	-15	True	NA	NA	NA	81436707	81426738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431210_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
ENSMUSG00000034758.13_9	chr10	-	2056	10	NIC	ENSMUSG00000034758.13	novel	1972	11	NA	NA	-3	0	intron_retention	FALSE	canonical	3	25	junction_9	16.5604019752012	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGATTTGTCCTTTACC	NA	False	NA	-17	True	NA	NA	NA	81433175	81426740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81432090_81433129
ENSMUSG00000034761.16_1	chr12	-	4333	31	NIC	ENSMUSG00000034761.16	novel	4498	32	NA	NA	-43	-3	combination_of_known_splicesites	FALSE	canonical	1	42	junction_9	20.3279774366922	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAACTATAAAGTATTT	NA	False	NA	NA	False	AATAAA	-10	NA	69939826	69850537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_69852126_69853971_69854028_69855985_69856057_69858047_69858141_69859909_69859979_69862528_69862707_69863063_69863168_69864795_69864855_69865157_69865273_69869576_69869638_69870195_69870276_69871353_69871439_69872515_69872558_69873064_69873163_69874135_69874293_69874797_69874841_69877202_69877271_69878325_69878385_69884768_69884848_69888693_69888811_69889661_69889744_69891129_69891193_69892454_69892587_69896320_69896394_69897599_69897643_69897727_69897776_69899472_69899529_69903054_69903120_69903546_69903638_69921050_69921109_69939426
ENSMUSG00000034765.7_0	chr19	+	2400	4	FSM	ENSMUSG00000034765.7	ENSMUST00000038287.7	2473	4	38	35	38	-35	multi-exon	FALSE	canonical	3	31	junction_3	7.25718035235908	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATAACAAAAAA	NA	False	NA	44	True	NA	NA	NA	53517577	53530827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_53518128_53522256_53522406_53525887_53526108_53529346
ENSMUSG00000034765.7_1	chr19	+	2434	4	NNC	ENSMUSG00000034765.7	novel	2473	4	NA	NA	-6	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.8718114143852	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATAGTACAAAATAAAAAT	NA	False	NA	35	True	NA	NA	NA	53517533	53530818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_53518128_53522257_53522406_53525887_53526108_53529346
ENSMUSG00000034768.5_1	chr11	+	1991	4	NNC	ENSMUSG00000034768.5	novel	2843	5	NA	NA	7787	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	22.0504472113883	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAACAAACGTGTGGACA	3502	False	NA	NA	False	AATAAA	-11	NA	102167355	102170278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_102167698_102168003_102168118_102168701_102168940_102168981
ENSMUSG00000034768.5_3	chr11	+	2024	3	ISM	ENSMUSG00000034768.5	ENSMUST00000036467.5	2843	5	7796	10	7796	-10	3prime_fragment	FALSE	canonical	3	26	junction_2	14	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAACAAACGTGTGGACA	3511	False	NA	NA	False	AATAAA	-11	NA	102167364	102170278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102167698_102168003_102168118_102168701
ENSMUSG00000034773.17_0	chr11	+	2552	10	FSM	ENSMUSG00000034773.17	ENSMUST00000100392.5	2547	10	-13	8	-13	-8	multi-exon	FALSE	canonical	3	289	junction_3	21.1502561056204	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCCAGCCTCCGTCCCA	NA	False	NA	7	True	AATAAA	-14	NA	102139694	102156005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
ENSMUSG00000034773.17_3	chr11	+	2711	11	NNC	ENSMUSG00000034773.17	novel	2813	11	NA	NA	-16	-8	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	126.309144562062	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCCAGCCTCCGTCCCA	NA	False	NA	7	True	AATAAA	-14	NA	102139691	102156005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_102139919_102141504_102141556_102145289_102145446_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
ENSMUSG00000034773.17_31	chr11	+	1910	8	ISM	ENSMUSG00000034773.17	ENSMUST00000100392.5	2547	10	6439	8	-331	-8	3prime_fragment	FALSE	canonical	3	289	junction_1	23.1789841477673	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCCAGCCTCCGTCCCA	611	False	NA	7	True	AATAAA	-14	NA	102146146	102156005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
ENSMUSG00000034777.3_0	chr6	+	1250	3	FSM	ENSMUSG00000034777.3	ENSMUST00000037807.3	1242	3	-14	6	-14	-6	multi-exon	FALSE	canonical	3	115	junction_1	5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCACTCCCTTCTGTCCC	NA	False	NA	15	True	AATAAA	-26	NA	83688231	83715289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83688526_83710080_83710269_83714521
ENSMUSG00000034777.3_4	chr6	+	494	1	ISM	ENSMUSG00000034777.3	ENSMUST00000037807.3	1242	3	26550	6	26550	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCACTCCCTTCTGTCCC	251	False	NA	15	True	AATAAA	-26	NA	83714795	83715289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_83714800_83715300
ENSMUSG00000034781.6_0	chr10	-	3347	7	FSM	ENSMUSG00000034781.6	ENSMUST00000043604.6	3414	7	58	9	58	-9	multi-exon	FALSE	canonical	3	370	junction_6	26.2339898266013	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTCCTTTGTG	4281	False	NA	-9	True	AATAAA	-10	NA	81380966	81364566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81366820_81366925_81367080_81367155_81367286_81368229_81368359_81369085_81369241_81370913_81371099_81380625
ENSMUSG00000034781.6_3	chr10	-	1716	1	ISM	ENSMUSG00000034781.6	ENSMUST00000043604.6	3414	7	14743	8	1568	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTGGCTCCTTTGTGA	NA	False	NA	-8	True	AATAAA	-11	NA	81366281	81364565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_81364600_81366300
ENSMUSG00000034786.18_0	chr17	+	1324	4	FSM	ENSMUSG00000034786.18	ENSMUST00000038244.15	1343	4	17	2	17	-2	multi-exon	FALSE	canonical	2	5	junction_1	3.29983164553722	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAAGACTGGTATCTGG	NA	False	NA	3	True	AATAAA	-16	NA	34808796	34810726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34809235_34809434_34809538_34809715_34809916_34810143
ENSMUSG00000034789.9_1	chr13	-	1358	7	NIC	ENSMUSG00000034789.9	novel	1168	8	NA	NA	1	0	intron_retention	FALSE	canonical	3	458	junction_6	60.0101843208486	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTGTGCACTGGGTG	6443	False	NA	-22	True	AATAAA	-14	NA	55469757	55467697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_55468028_55468124_55468188_55468315_55468658_55468739_55468808_55468914_55468994_55469202_55469272_55469350
ENSMUSG00000034789.9_2	chr13	-	1167	8	FSM	ENSMUSG00000034789.9	ENSMUST00000035242.9	1168	8	1	0	1	0	multi-exon	FALSE	canonical	3	320	junction_3	95.4118890465364	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTGTGCACTGGGTG	6443	False	NA	-22	True	AATAAA	-14	NA	55469757	55467697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_55468028_55468124_55468188_55468315_55468367_55468557_55468658_55468739_55468808_55468914_55468994_55469202_55469272_55469350
ENSMUSG00000034789.9_4	chr13	-	1437	6	NIC	ENSMUSG00000034789.9	novel	1168	8	NA	NA	1	0	intron_retention	FALSE	canonical	3	480	junction_5	51.3949413853153	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTGTGCACTGGGTG	6443	False	NA	-22	True	AATAAA	-14	NA	55469757	55467697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_55468028_55468124_55468188_55468315_55468658_55468739_55468808_55468914_55468994_55469202
ENSMUSG00000034792.9_0	chr10	-	1024	2	FSM	ENSMUSG00000034792.9	ENSMUST00000147908.2	1046	2	6	16	6	-9	multi-exon	FALSE	canonical	3	76	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAACAATCAGGGAA	6426	False	NA	NA	False	AATAAA	-9	NA	81344001	81338155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81338940_81343761
ENSMUSG00000034792.9_1	chr10	-	3021	3	NNC	ENSMUSG00000034792.9	novel	1046	2	NA	NA	20	2033	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	38	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGATATTAAGCACCTG	6440	False	NA	NA	False	AATAAA	-16	NA	81343987	81336106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_81336729_81336766_81338940_81343761
ENSMUSG00000034793.16_1	chr11	+	1415	6	FSM	ENSMUSG00000034793.16	ENSMUST00000078975.8	1573	6	156	2	-1	-2	multi-exon	FALSE	canonical	3	149	junction_4	4.31740662898458	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTTCTTGTCTGTGC	NA	False	NA	3	True	AATAAA	-17	NA	102080650	102084905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102080970_102082860_102082968_102083298_102083390_102083574_102083694_102083910_102084053_102084268
ENSMUSG00000034793.16_3	chr11	+	1637	5	ISM	ENSMUSG00000034793.16	ENSMUST00000078975.8	1573	6	150	2	-7	-2	intron_retention	TRUE	canonical	3	149	junction_4	2.29128784747792	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTTCTTGTCTGTGC	NA	False	NA	3	True	AATAAA	-17	NA	102080644	102084905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102080970_102082860_102082968_102083298_102083390_102083574_102083694_102083910
ENSMUSG00000034796.15_0	chr8	+	2416	15	FSM	ENSMUSG00000034796.15	ENSMUST00000037900.9	2398	15	-24	6	-20	-4	multi-exon	FALSE	canonical	0	0	junction_1	9.77919490864276	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTCACAGCCTGTGCCTT	NA	False	NA	-2	True	AATAAA	-10	NA	123844092	123861915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123844404_123846357_123846541_123850886_123850962_123851140_123851216_123852300_123852385_123852979_123853070_123853371_123853474_123854091_123854179_123854471_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
ENSMUSG00000034796.15_10	chr8	+	2380	8	NNC	ENSMUSG00000034796.15	novel	2398	15	NA	NA	-50	0	intron_retention	FALSE	canonical	3	6	junction_1	5.96930926165034	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTGTGCCTTTCTTGC	NA	False	NA	4	True	AATAAA	-16	NA	123853205	123861921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_123854179_123854479_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
ENSMUSG00000034796.15_11	chr8	+	2717	6	NIC	ENSMUSG00000034796.15	novel	3542	12	NA	NA	-25	-4	intron_retention	FALSE	canonical	3	16	junction_2	3.18747549010185	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTCACAGCCTGTGCCTT	NA	False	NA	-2	True	AATAAA	-10	NA	123853230	123861915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_123854532_123855316_123855451_123856281_123856337_123856792_123857046_123860347_123860585_123861178
ENSMUSG00000034796.15_16	chr8	+	2634	8	NIC	ENSMUSG00000034796.15	novel	2398	15	NA	NA	-89	0	intron_retention	FALSE	canonical	2	3	junction_1	6.87497680886626	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTGTGCCTTTCTTGC	NA	False	NA	4	True	AATAAA	-16	NA	123853166	123861921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_123853474_123853559_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
ENSMUSG00000034796.15_24	chr8	+	2307	9	NIC	ENSMUSG00000034796.15	novel	3018	14	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	6.93609219950254	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACAGCCTGTGCCTTTCTT	NA	False	NA	2	True	AATAAA	-14	NA	123853198	123861919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_123853474_123853559_123854179_123854471_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
ENSMUSG00000034796.15_4	chr8	+	1795	9	ISM	ENSMUSG00000034796.15	ENSMUST00000037900.9	2398	15	9064	0	-75	0	3prime_fragment	FALSE	canonical	1	2	junction_1	7.1894019222742	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTGTGCCTTTCTTGC	NA	False	NA	4	True	AATAAA	-16	NA	123853180	123861921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123853474_123854091_123854179_123854471_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
ENSMUSG00000034796.15_5	chr8	+	2406	8	ISM	ENSMUSG00000034796.15	ENSMUST00000134235.8	3018	14	9075	-2	-68	0	3prime_fragment	FALSE	canonical	3	10	junction_1	4.85293935756087	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTGTGCCTTTCTTGC	NA	False	NA	4	True	AATAAA	-16	NA	123853187	123861921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123854179_123854471_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
ENSMUSG00000034796.15_6	chr8	+	3371	4	ISM	ENSMUSG00000034796.15	ENSMUST00000131659.8	3542	12	8984	3309	-86	-19	intron_retention	FALSE	canonical	3	16	junction_2	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCCTGTCTCGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	123853169	123858612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123854532_123855316_123855451_123856281_123856337_123856792
ENSMUSG00000034799.17_0	chr8	-	3452	5	ISM	ENSMUSG00000034799.17	ENSMUST00000030170.15	10255	44	36800	2325	6440	2312	3prime_fragment	TRUE	canonical	2	9	junction_4	2.12132034355964	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAAAAACACAGA	NA	False	NA	NA	False	NA	NA	NA	72087601	72079385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_72082368_72083159_72083320_72083597_72083691_72087160_72087309_72087532
ENSMUSG00000034799.17_10	chr8	-	918	8	NIC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	45	junction_6	3.4166459266004	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTGTGTTATATATAACAA	NA	False	NA	-1	True	NA	NA	NA	72124378	72112988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_72113294_72114462_72114496_72115124_72115180_72115498_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
ENSMUSG00000034799.17_13	chr8	-	1867	6	NIC	ENSMUSG00000034799.17	novel	944	8	NA	NA	1	1	intron_retention	FALSE	canonical	3	45	junction_4	3.86781592116274	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTGTGTTATATATAACAA	NA	False	NA	-1	True	NA	NA	NA	72124379	72112988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_72113294_72114462_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
ENSMUSG00000034799.17_24	chr8	-	932	8	FSM	ENSMUSG00000034799.17	ENSMUST00000176777.8	944	8	7	5	2	0	multi-exon	FALSE	canonical	2	5	junction_3	16.3682120998886	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGTGTGTTATATATAACA	NA	False	NA	-2	True	NA	NA	NA	72124378	72112989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_72113294_72114462_72114496_72115124_72115180_72115483_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
ENSMUSG00000034799.17_5	chr8	-	5650	41	NIC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	22	117	combination_of_known_splicesites	TRUE	canonical	0	0	junction_29	16.3412820794453	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTCTGTCCTTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	72124358	72081580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_72082368_72083159_72083320_72083597_72083691_72087160_72087309_72087532_72087614_72087813_72087871_72089181_72089212_72090415_72090455_72092343_72092468_72093999_72094153_72094496_72094586_72094772_72094851_72095735_72095820_72097196_72097341_72097516_72097614_72098328_72098456_72098541_72098628_72100544_72100679_72101541_72101677_72102191_72102282_72102497_72102567_72103170_72103322_72103767_72103932_72104596_72104713_72104877_72105048_72105161_72105304_72106031_72106260_72107447_72107668_72107776_72107849_72108306_72108386_72108898_72108946_72110646_72110756_72110899_72111446_72113085_72113294_72114462_72114496_72115124_72115180_72115498_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
ENSMUSG00000034799.17_9	chr8	-	5600	39	NIC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	-1	113	combination_of_known_splicesites	FALSE	canonical	0	0	junction_27	16.5171991280608	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGTTTCTGTCCTTGC	NA	False	NA	NA	False	NA	NA	NA	72124381	72081584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_72082368_72083159_72083320_72083597_72083691_72087160_72087309_72087532_72087614_72087813_72087871_72092343_72092468_72093999_72094153_72094496_72094586_72094772_72094851_72095735_72095820_72097196_72097341_72097516_72097614_72098328_72098456_72098541_72098628_72100544_72100679_72101541_72101677_72102191_72102282_72102497_72102567_72103170_72103322_72103767_72103932_72104596_72104713_72104877_72105048_72105161_72105304_72106031_72106260_72107447_72107668_72107776_72107849_72108306_72108386_72108898_72108946_72110646_72110756_72110899_72111446_72113085_72113294_72114462_72114496_72115124_72115180_72115498_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
ENSMUSG00000034800.16_10	chr2	-	4757	5	ISM	ENSMUSG00000034800.16	ENSMUST00000110368.9	2981	6	767	11	767	-4	3prime_fragment	FALSE	canonical	3	10	junction_4	9.20597631976098	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTAAATGAATACTGAAGT	NA	False	NA	-30	True	NA	NA	NA	127425822	127417463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127423778
ENSMUSG00000034800.16_12	chr2	-	5851	4	FSM	ENSMUSG00000034800.16	ENSMUST00000164551.2	1284	4	-3167	-1400	2	-2	multi-exon	FALSE	canonical	3	28	junction_2	2.49443825784929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGAAGTGTCTCTATT	NA	False	NA	-21	True	NA	NA	NA	127426595	127417454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395
ENSMUSG00000034800.16_15	chr2	-	3498	2	ISM	ENSMUSG00000034800.16	ENSMUST00000164551.2	1284	4	1812	-1395	1812	0	3prime_fragment	FALSE	canonical	3	30	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAATACTGAAGTGTCT	NA	False	NA	-26	True	NA	NA	NA	127421616	127417459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_127419865_127420523
ENSMUSG00000034800.16_16	chr2	-	3091	6	NNC	ENSMUSG00000034800.16	novel	2981	6	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_5	12.4963994814506	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGAAGTGTCTCTATT	NA	False	NA	-21	True	NA	NA	NA	127426595	127417454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127423778_127424102_127426549
ENSMUSG00000034800.16_4	chr2	-	1384	1	Genic_Genomic	ENSMUSG00000034800.16	novel	NA	NA	NA	NA	5494	31	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTTGACTGTCTCTGAG	NA	False	NA	-14	True	NA	NA	NA	127417934	127416550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_127416600_127417900
ENSMUSG00000034800.16_5	chr2	-	2763	5	FSM	ENSMUSG00000034800.16	ENSMUST00000077422.12	2765	5	2	0	2	0	multi-exon	FALSE	canonical	3	15	junction_4	7.11951543294907	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAATACTGAAGTGTCT	NA	False	NA	-26	True	NA	NA	NA	127426595	127417459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127426549
ENSMUSG00000034800.16_7	chr2	-	2739	5	ISM	ENSMUSG00000034800.16	ENSMUST00000110366.8	4912	6	2407	878	-10	0	3prime_fragment	FALSE	canonical	0	0	junction_4	13.4536240470737	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAATACTGAAGTGTCT	NA	False	NA	-26	True	NA	NA	NA	127426607	127417459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127426585
ENSMUSG00000034800.16_8	chr2	-	2985	6	FSM	ENSMUSG00000034800.16	ENSMUST00000110368.9	2981	6	-6	2	2	-2	multi-exon	FALSE	canonical	1	3	junction_5	12.1983605455815	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGAAGTGTCTCTATT	NA	False	NA	-21	True	NA	NA	NA	127426595	127417454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127423778_127423996_127426549
ENSMUSG00000034801.14_1	chr12	-	5710	23	FSM	ENSMUSG00000034801.14	ENSMUST00000183277.8	4512	23	-112	-1086	-101	-1	multi-exon	FALSE	canonical	3	44	junction_4	8.63397096042456	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGATTTGCAATATTGT	NA	False	NA	-6	True	AATAAA	-20	NA	69728727	69630540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_69632407_69633382_69633493_69635473_69635516_69637468_69637731_69639705_69639823_69643417_69643591_69645549_69645668_69650249_69650413_69650558_69650679_69653963_69654187_69657496_69657601_69661409_69661533_69663056_69663139_69663627_69664284_69664829_69664958_69673990_69674090_69678833_69678945_69682355_69682500_69686827_69687035_69695225_69695391_69697373_69697506_69704726_69704853_69728288
ENSMUSG00000034801.14_13	chr12	-	5111	21	ISM	ENSMUSG00000034801.14	ENSMUST00000183277.8	4512	23	31144	-1086	30930	-1	3prime_fragment	FALSE	canonical	3	44	junction_4	8.91010662113535	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGATTTGCAATATTGT	NA	False	NA	-6	True	AATAAA	-20	NA	69697471	69630540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_69632407_69633382_69633493_69635473_69635516_69637468_69637731_69639705_69639823_69643417_69643591_69645549_69645668_69650249_69650413_69650558_69650679_69653963_69654187_69657496_69657601_69661409_69661533_69663056_69663139_69663627_69664284_69664829_69664958_69673990_69674090_69678833_69678945_69682355_69682500_69686827_69687035_69695225_69695391_69697373
ENSMUSG00000034801.14_18	chr12	-	4673	18	ISM	ENSMUSG00000034801.14	ENSMUST00000183277.8	4512	23	-75	10394	-64	-841	5prime_fragment	FALSE	canonical	3	46	junction_1	6.90468974570393	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTGTTGTGTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	69728690	69642020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_69643591_69645549_69645668_69650249_69650413_69650558_69650679_69653963_69654187_69657496_69657601_69661409_69661533_69663056_69663139_69663627_69664284_69664829_69664958_69673990_69674090_69678833_69678945_69682355_69682500_69686827_69687035_69695225_69695391_69697373_69697506_69704726_69704853_69728288
ENSMUSG00000034801.14_2	chr12	-	5658	23	FSM	ENSMUSG00000034801.14	ENSMUST00000035773.14	5607	23	-51	0	-51	0	multi-exon	TRUE	canonical	1	6	junction_15	13.7125899802678	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTTGCAATATTGTT	NA	False	NA	-5	True	AATAAA	-21	NA	69728677	69630539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_69632407_69633382_69633493_69635473_69635516_69637468_69637731_69639705_69639823_69643417_69643591_69645549_69645668_69650249_69650413_69650558_69650679_69653963_69654187_69657496_69657601_69661409_69661533_69663056_69663139_69663627_69664284_69664829_69664955_69673990_69674090_69678833_69678945_69682355_69682500_69686827_69687035_69695225_69695391_69697373_69697506_69704726_69704853_69728288
ENSMUSG00000034807.10_2	chr8	+	3024	12	FSM	ENSMUSG00000034807.10	ENSMUST00000047903.10	3207	12	177	6	4	-1	multi-exon	FALSE	canonical	3	748	junction_9	75.1827525499814	1651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAAGTCTTTGGGTTTGG	NA	False	NA	24	True	ATTAAA	-16	NA	72063818	72077549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72064089_72064727_72064839_72065553_72065672_72070193_72070329_72070718_72070924_72072295_72072416_72073244_72073322_72073391_72073499_72074407_72074541_72075346_72075475_72075733_72075941_72076136
ENSMUSG00000034807.10_3	chr8	+	3821	11	NIC	ENSMUSG00000034807.10	novel	3207	12	NA	NA	13	-1	intron_retention	FALSE	canonical	3	838	junction_7	59.7648726259832	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAAGTCTTTGGGTTTGG	NA	False	NA	24	True	ATTAAA	-16	NA	72063827	72077549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_72064089_72064727_72064839_72065553_72065672_72070193_72070329_72070718_72070924_72072295_72072416_72073244_72073322_72073391_72073499_72074407_72075475_72075733_72075941_72076136
ENSMUSG00000034813.19_0	chr10	+	4374	18	ISM	ENSMUSG00000034813.20	ENSMUST00000147454.8	4520	24	125626	-612	35077	-6	3prime_fragment	FALSE	canonical	1	1	junction_2	2.67889353805546	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGCCAAAATAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	119780928	119913033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_119781077_119811774_119811923_119814342_119814513_119821378_119821535_119822236_119822390_119835656_119835844_119836430_119836577_119846110_119846192_119853977_119854048_119855865_119856012_119871255_119871401_119874195_119874336_119874503_119874699_119885255_119885413_119885909_119886022_119890737_119890972_119908535_119908683_119911194
ENSMUSG00000034813.19_3	chr10	+	2965	8	ISM	ENSMUSG00000034813.20	ENSMUST00000130387.8	2780	15	42634	10134	42248	-7	internal_fragment	FALSE	canonical	1	2	junction_4	2.37332110369088	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGCCAAAATAAAAAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	119871258	119913032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_119871401_119874195_119874336_119874503_119874699_119885255_119885413_119885909_119886022_119890737_119890972_119908535_119908683_119911194
ENSMUSG00000034813.19_4	chr10	+	5749	24	NNC	ENSMUSG00000034813.20	novel	4145	25	NA	NA	-256	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.635370862729	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCCAAAATAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-15	NA	119289478	119913036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_119290328_119733617_119733701_119765805_119765942_119767148_119767295_119774148_119774233_119778766_119778843_119780930_119781077_119811774_119811923_119814342_119814513_119821378_119821535_119822236_119822390_119835656_119835844_119836430_119836577_119846110_119846192_119853977_119854048_119855865_119856012_119871255_119871401_119874195_119874336_119874503_119874699_119885255_119885413_119885909_119886022_119890737_119890972_119908535_119908683_119911194
ENSMUSG00000034820.5_0	chr19	+	3519	10	FSM	ENSMUSG00000034820.5	ENSMUST00000038379.5	3500	10	-11	-8	-11	8	multi-exon	FALSE	canonical	3	152	junction_5	38.5749230894635	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGCATTGTATTTTTTT	NA	False	NA	24	True	AATAAA	-24	NA	10502618	10525025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ENSMUSG00000034820.5_1	chr19	+	3593	11	FSM	ENSMUSG00000034820.5	ENSMUST00000236206.2	3315	11	-20	-258	-20	7	multi-exon	FALSE	canonical	3	29	junction_4	86.2092802429066	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGCATTGTATTTTTT	NA	False	NA	23	True	AATAAA	-23	NA	10502609	10525024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10509494_10509561_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ENSMUSG00000034820.5_10	chr19	+	3577	11	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	-22	8	combination_of_known_junctions	FALSE	canonical	3	21	junction_3	93.086841175324	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGCATTGTATTTTTTT	NA	False	NA	24	True	AATAAA	-24	NA	10502607	10525025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509624_10509699_10510183_10510288_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ENSMUSG00000034820.5_11	chr19	+	3572	11	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	-15	7	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	89.3263678876512	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGCATTGTATTTTTT	NA	False	NA	23	True	AATAAA	-23	NA	10502614	10525024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509621_10509699_10510183_10510288_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ENSMUSG00000034820.5_2	chr19	+	3493	10	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	-12	8	combination_of_known_junctions	FALSE	canonical	3	71	junction_5	59.2792096047006	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGCATTGTATTTTTTT	NA	False	NA	24	True	AATAAA	-24	NA	10502617	10525025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ENSMUSG00000034820.5_4	chr19	+	3669	11	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	-19	73	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	81.5971200472174	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTACGGATTCTGCATTGA	NA	False	NA	9	True	AATAAA	-14	NA	10502610	10525090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509621_10509699_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ENSMUSG00000034820.5_63	chr19	+	1871	1	Genic_Genomic	ENSMUSG00000034820.5	novel	NA	NA	NA	NA	13401	7	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGCATTGTATTTTTT	NA	False	NA	23	True	AATAAA	-23	NA	10523153	10525024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_10523200_10525000
ENSMUSG00000034820.5_8	chr19	+	3566	11	NIC	ENSMUSG00000034820.5	novel	3315	11	NA	NA	-20	7	combination_of_known_junctions	FALSE	canonical	3	29	junction_4	93.34157701689	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGCATTGTATTTTTT	NA	False	NA	23	True	AATAAA	-23	NA	10502609	10525024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509494_10509561_10510183_10510288_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ENSMUSG00000034825.15_0	chr7	-	3953	8	FSM	ENSMUSG00000034825.15	ENSMUST00000041460.13	3927	8	-26	0	-26	0	multi-exon	FALSE	canonical	1	2	junction_7	5.70356136505061	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTCTGAGTCTCTGAA	NA	False	NA	-1	True	AATAAA	-19	NA	109381258	109357261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_109360397_109360853_109360949_109361027_109361081_109362690_109362831_109364672_109364756_109365679_109365842_109380506_109380668_109381134
ENSMUSG00000034825.15_4	chr7	-	3911	7	FSM	ENSMUSG00000034825.15	ENSMUST00000033331.7	3910	7	1	-2	1	2	multi-exon	FALSE	canonical	2	8	junction_6	3.54338193757822	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTTGTCTGAGTCTCTG	NA	False	NA	-3	True	AATAAA	-17	NA	109380751	109357263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_109360397_109360853_109360949_109361027_109361081_109362690_109362831_109364672_109364756_109365679_109365842_109380506
ENSMUSG00000034826.15_0	chr5	-	2247	12	FSM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	99	6	3	-6	multi-exon	FALSE	canonical	3	487	junction_1	63.2088235288462	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAATTCTGTCTGGTGTT	NA	False	NA	-6	True	AATAAA	-19	NA	92582979	92563404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
ENSMUSG00000034826.15_5	chr5	-	2056	11	NIC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	-4	-7	combination_of_known_splicesites	FALSE	canonical	3	22	junction_7	179.096761556428	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTAATTCTGTCTGGTGT	NA	False	NA	-7	True	AATAAA	-18	NA	92582977	92563405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92575958_92576186_92578659_92578813_92578897_92578982_92582862
ENSMUSG00000034832.16_0	chr6	-	3946	1	ISM	ENSMUSG00000034832.16	ENSMUST00000089622.11	10904	11	75350	7	75307	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAATTCTGTGTAAGCT	NA	False	NA	-5	True	AATAAA	-20	NA	83343307	83339361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_83339400_83343300
ENSMUSG00000034832.16_1	chr6	-	10880	11	FSM	ENSMUSG00000034832.16	ENSMUST00000089622.11	10904	11	21	3	21	-3	multi-exon	FALSE	canonical	2	3	junction_8	2.99332590941915	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTGTGTAAGCTTTTT	NA	False	NA	-1	True	AATAAA	-24	NA	83418636	83339357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83346808_83347364_83347702_83350175_83350314_83350764_83350855_83352731_83352883_83353747_83353957_83356853_83356948_83362966_83363058_83379648_83381807_83418198_83418256_83418531
ENSMUSG00000034845.7_1	chr8	-	887	4	ISM	ENSMUSG00000034845.7	ENSMUST00000048452.6	1987	6	4044	2	4044	-2	3prime_fragment	FALSE	canonical	3	9	junction_3	3.77123616632825	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTGGTTTGTATTTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	71960352	71950410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71951050_71959480_71959563_71959663_71959722_71960244
ENSMUSG00000034848.18_0	chr2	-	4453	29	FSM	ENSMUSG00000034848.18	ENSMUST00000102718.10	4470	29	13	4	-12	-4	multi-exon	TRUE	canonical	1	2	junction_7	6.12653562590721	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCTGGTTTATATTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	66086948	66014674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_66015188_66016497_66016566_66018603_66018725_66021902_66022128_66028011_66028208_66031466_66031629_66031816_66031968_66037795_66037878_66038997_66039109_66040335_66040525_66047528_66047636_66052997_66053137_66053858_66053970_66054419_66054493_66056249_66056489_66057074_66057297_66059325_66059484_66061632_66061763_66065386_66065588_66065916_66066015_66066564_66066758_66068130_66068230_66069866_66069952_66072974_66073133_66077651_66077775_66079738_66079906_66082237_66082349_66082446_66082577_66086857
ENSMUSG00000034848.18_2	chr2	-	2750	18	ISM	ENSMUSG00000034848.18	ENSMUST00000125446.3	4061	28	-36	37813	-11	-4441	5prime_fragment	FALSE	canonical	2	5	junction_10	6.52543599147925	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGATAAATAGTCCATTG	NA	False	NA	NA	False	AATAAA	-14	NA	66086972	66052799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_66053137_66053858_66053970_66054419_66054493_66056249_66056489_66057074_66057297_66059325_66059484_66061632_66061763_66065386_66065588_66065916_66066015_66066564_66066758_66068130_66068230_66069866_66069952_66072974_66073133_66077651_66077775_66079738_66079906_66082237_66082349_66082446_66082577_66086857
ENSMUSG00000034848.18_3	chr2	-	1228	6	ISM	ENSMUSG00000034848.18	ENSMUST00000125446.3	4061	28	-33	57561	-8	-11088	5prime_fragment	FALSE	canonical	2	9	junction_3	7.79743547584717	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGTTGAATTGCATCAA	NA	False	NA	NA	False	AATAAA	-19	NA	66086969	66072547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_66073133_66077651_66077775_66079738_66079906_66082237_66082349_66082446_66082577_66086857
ENSMUSG00000034848.18_4	chr2	-	3032	12	ISM	ENSMUSG00000034848.18	ENSMUST00000125446.3	4061	28	22	45166	22	1307	5prime_fragment	FALSE	canonical	2	5	junction_4	7.6515001500003	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTTGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	66086914	66060152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_66061763_66065386_66065588_66065916_66066015_66066564_66066758_66068130_66068230_66069866_66069952_66072974_66073133_66077651_66077775_66079738_66079906_66082237_66082349_66082446_66082577_66086857
ENSMUSG00000034850.16_0	chr2	+	4402	4	FSM	ENSMUSG00000034850.16	ENSMUST00000035871.15	4811	4	61	348	0	-348	multi-exon	FALSE	canonical	3	59	junction_1	34.6634613902818	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGCCTGTAGTCTTCCT	2395	False	NA	7	True	AATAAA	-20	NA	127089888	127102679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_127090005_127090411_127090730_127097924_127098090_127098876
ENSMUSG00000034850.16_1	chr2	+	4803	3	NIC	ENSMUSG00000034850.16	novel	4811	4	NA	NA	2	-348	intron_retention	FALSE	canonical	3	85	junction_1	28.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGCCTGTAGTCTTCCT	2401	False	NA	7	True	AATAAA	-20	NA	127089894	127102679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_127090730_127097924_127098090_127098876
ENSMUSG00000034850.16_4	chr2	+	4088	3	FSM	ENSMUSG00000034850.16	ENSMUST00000174288.2	842	3	-8	-3238	-4	-348	multi-exon	FALSE	canonical	2	7	junction_1	67.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGCCTGTAGTCTTCCT	2391	False	NA	7	True	AATAAA	-20	NA	127089884	127102679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_127090005_127097924_127098090_127098876
ENSMUSG00000034850.16_7	chr2	+	2781	1	ISM	ENSMUSG00000034850.16	ENSMUST00000035871.15	4811	4	10071	348	10006	-348	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGCCTGTAGTCTTCCT	NA	False	NA	7	True	AATAAA	-20	NA	127099898	127102679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_127099900_127102700
ENSMUSG00000034853.17_0	chr4	-	5562	17	NNC	ENSMUSG00000034853.17	novel	5689	16	NA	NA	-20	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	6.34305722818264	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAACAGCATGTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	106657007	106601757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_106602217_106602301_106605682_106606458_106606586_106607079_106607212_106610023_106610155_106610910_106610995_106611270_106611338_106612502_106612559_106613041_106613187_106615502_106615623_106617277_106617432_106619160_106619297_106619641_106619741_106620590_106620652_106627900_106627971_106628539_106628754_106656880
ENSMUSG00000034853.17_11	chr4	-	2761	16	FSM	ENSMUSG00000034853.17	ENSMUST00000065253.13	2939	16	-95	273	-95	-117	multi-exon	FALSE	canonical	0	0	junction_15	6.50606554600312	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGGGACGTCAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	106662290	106604704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_106605682_106606458_106606586_106607079_106607212_106610023_106610155_106610910_106610995_106611270_106611338_106612502_106612559_106613041_106613187_106615502_106615623_106617277_106617432_106619160_106619297_106619641_106619741_106620590_106620652_106627900_106627971_106628539_106628754_106662102
ENSMUSG00000034853.17_3	chr4	-	2713	16	FSM	ENSMUSG00000034853.17	ENSMUST00000102762.10	5689	16	26	2950	23	-114	multi-exon	FALSE	canonical	3	17	junction_9	3.45382235919697	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGACGTCAGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	106657017	106604701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_106605682_106606458_106606586_106607079_106607212_106610023_106610155_106610910_106610995_106611270_106611338_106612502_106612559_106613041_106613187_106615502_106615623_106617277_106617432_106619160_106619297_106619641_106619741_106620590_106620652_106627900_106627971_106628539_106628754_106656880
ENSMUSG00000034853.17_9	chr4	-	2041	9	ISM	ENSMUSG00000034853.17	ENSMUST00000140541.8	2620	14	13202	-156	-2394	0	3prime_fragment	FALSE	canonical	3	22	junction_1	2.44629822384762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGTGTGTGGCTTATTG	1685	False	NA	NA	False	NA	NA	NA	106615551	106604431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_106605682_106606458_106606586_106607079_106607212_106610023_106610155_106610910_106610995_106611270_106611338_106612502_106612559_106613041_106613187_106615502
ENSMUSG00000034854.9_1	chr10	+	3900	10	FSM	ENSMUSG00000034854.9	ENSMUST00000044844.9	3971	10	62	9	1	-9	multi-exon	FALSE	canonical	3	201	junction_9	22.6077666104176	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTCATAGCTCAGTCAAC	884	False	NA	21	True	AATAAA	-12	NA	81193386	81202050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81193721_81195915_81196127_81196932_81197072_81197147_81197334_81197858_81197952_81198038_81198132_81198521_81198693_81198766_81198862_81199386_81199518_81199603
ENSMUSG00000034854.9_32	chr10	+	2116	1	ISM	ENSMUSG00000034854.9	ENSMUST00000044844.9	3971	10	6614	5	6553	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAGCTCAGTCAACCCTT	4857	False	NA	25	True	AATAAA	-16	NA	81199938	81202054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81199900_81202100
ENSMUSG00000034858.17_0	chr9	+	3874	13	FSM	ENSMUSG00000034858.17	ENSMUST00000215370.2	4205	13	-34	365	-34	-2	multi-exon	FALSE	canonical	1	2	junction_1	3.15788255358274	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTGTGTGGTGTGTTTT	NA	False	NA	NA	False	AATATA	-14	NA	74860211	74939365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_74860342_74860995_74861113_74911546_74911732_74913569_74913773_74914243_74914370_74915932_74917749_74920222_74920337_74923125_74923206_74924319_74924429_74926278_74926438_74930866_74930936_74932932_74933130_74938796
ENSMUSG00000034858.17_1	chr9	+	4033	13	FSM	ENSMUSG00000034858.17	ENSMUST00000170846.8	4355	13	-63	385	26	-2	multi-exon	FALSE	canonical	2	6	junction_4	2.59673940848048	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTGTGTGGTGTGTTTT	NA	False	NA	NA	False	AATATA	-14	NA	74860271	74939365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_74860561_74860995_74861113_74911546_74911732_74913569_74913773_74914243_74914370_74915932_74917749_74920222_74920337_74923125_74923206_74924319_74924429_74926278_74926438_74930866_74930936_74932932_74933130_74938796
ENSMUSG00000034858.17_3	chr9	+	2775	3	ISM	ENSMUSG00000034858.17	ENSMUST00000081746.7	3795	12	45534	2	45534	-2	3prime_fragment	FALSE	canonical	3	8	junction_1	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTGTGTGGTGTGTTTT	NA	False	NA	NA	False	AATATA	-14	NA	74928926	74939365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_74930936_74932932_74933130_74938796
ENSMUSG00000034858.17_8	chr9	+	3852	12	NIC	ENSMUSG00000034858.17	novel	4065	13	NA	NA	15	-17	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	3.66804381851491	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCATAAGTCTTTAATTT	NA	False	NA	NA	False	NA	NA	NA	74860368	74939350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_74860561_74860995_74861113_74911546_74911732_74913569_74913773_74914243_74914370_74915932_74917749_74920222_74920337_74923125_74923206_74924319_74924429_74926278_74926438_74932932_74933130_74938796
ENSMUSG00000034863.10_0	chr8	-	3678	17	FSM	ENSMUSG00000034863.10	ENSMUST00000093450.6	3653	17	-29	4	-29	-4	multi-exon	FALSE	canonical	3	18	junction_5	6.28987281270456	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTGCTCGAGGTCAGAG	NA	False	NA	-25	True	AATAAA	-12	NA	71938636	71928666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71929566_71931364_71931476_71931570_71931703_71931794_71931987_71933079_71933887_71934595_71934671_71934776_71934833_71934927_71935055_71935150_71935304_71935623_71935786_71935883_71936012_71936091_71936209_71936911_71937009_71937077_71937217_71937392_71937526_71937643_71937755_71938397
ENSMUSG00000034863.10_18	chr8	-	1894	5	ISM	ENSMUSG00000034863.10	ENSMUST00000093450.6	3653	17	4968	4	2743	-4	3prime_fragment	FALSE	canonical	3	20	junction_1	8.87059749960509	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTGCTCGAGGTCAGAG	NA	False	NA	-25	True	AATAAA	-12	NA	71933639	71928666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71929566_71931364_71931476_71931570_71931703_71931794_71931987_71933079
ENSMUSG00000034863.10_19	chr8	-	4756	14	NIC	ENSMUSG00000034863.10	novel	3653	17	NA	NA	-15	-4	intron_retention	FALSE	canonical	3	18	junction_5	6.79888609045672	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTGCTCGAGGTCAGAG	NA	False	NA	-25	True	AATAAA	-12	NA	71938622	71928666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71929566_71931364_71931476_71931570_71931703_71931794_71931987_71933079_71933887_71934595_71934671_71934776_71934833_71934927_71935055_71935150_71935786_71935883_71936012_71936091_71937217_71937392_71937526_71937643_71937755_71938397
ENSMUSG00000034863.10_24	chr8	-	3826	18	FSM	ENSMUSG00000034863.10	ENSMUST00000213382.2	3785	18	-45	4	-45	-4	multi-exon	FALSE	canonical	0	0	junction_6	9.99273092203912	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTGCTCGAGGTCAGAG	NA	False	NA	-25	True	AATAAA	-12	NA	71938652	71928666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71929566_71931364_71931476_71931570_71931703_71931794_71931987_71933079_71933887_71934262_71934395_71934595_71934671_71934776_71934833_71934927_71935055_71935150_71935304_71935623_71935786_71935883_71936012_71936091_71936209_71936911_71937009_71937077_71937217_71937392_71937526_71937643_71937755_71938397
ENSMUSG00000034867.17_17	chr7	+	4216	28	NIC	ENSMUSG00000034867.17	novel	4284	29	NA	NA	-10	-2	combination_of_known_junctions	FALSE	canonical	2	12	junction_20	54.7169546878799	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTCGTGCCATTTTTG	NA	False	NA	21	True	AGTAAA	-13	NA	35285689	35338649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
ENSMUSG00000034867.17_6	chr7	+	4263	29	FSM	ENSMUSG00000034867.17	ENSMUST00000040844.16	4284	29	19	2	8	-2	multi-exon	FALSE	canonical	3	207	junction_17	26.9819242214835	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTCGTGCCATTTTTG	NA	False	NA	21	True	AGTAAA	-13	NA	35285687	35338649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
ENSMUSG00000034867.17_8	chr7	+	1882	12	FSM	ENSMUSG00000034867.17	ENSMUST00000186245.7	1926	12	15	29	-10	-29	multi-exon	FALSE	canonical	3	240	junction_4	23.6388110621019	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTAAAATAAACAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	35285689	35308510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745
ENSMUSG00000034868.10_0	chr17	-	938	4	FSM	ENSMUSG00000034868.10	ENSMUST00000038446.10	2143	4	375	830	15	63	multi-exon	FALSE	canonical	3	1955	junction_2	187.919013289118	851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAGATGATGCTGACT	3419	False	NA	-21	True	AATAAA	-13	NA	71297510	71280957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71281492_71282453_71282616_71284042_71284242_71297467
ENSMUSG00000034868.10_3	chr17	-	896	3	ISM	ENSMUSG00000034868.10	ENSMUST00000233004.2	1001	4	1282	-60	1282	60	3prime_fragment	FALSE	canonical	3	1955	junction_2	205.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAATAAAGATGATGCTG	NA	False	NA	-24	True	AATAAA	-10	NA	71284245	71280960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_71281492_71282453_71282616_71284042
ENSMUSG00000034871.3_0	chr4	+	1917	8	FSM	ENSMUSG00000034871.3	ENSMUST00000047620.3	1923	8	5	1	5	-1	multi-exon	FALSE	canonical	2	3	junction_2	2.64189171555813	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCACTGTGTAAGACCTGG	2118	False	NA	3	True	NA	NA	NA	106591090	106605488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_106591286_106592646_106592794_106599341_106599495_106600393_106600554_106602669_106602895_106603252_106603393_106604169_106604314_106604735
ENSMUSG00000034875.6_0	chr7	-	1447	3	FSM	ENSMUSG00000034875.6	ENSMUST00000040962.6	2298	3	837	14	-273	-14	multi-exon	FALSE	canonical	3	351	junction_1	2	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGACATCCAAGTTGTA	NA	False	NA	-12	True	ATTAAA	-15	NA	35254892	35246623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_35247549_35250878_35251087_35254578
ENSMUSG00000034880.8_0	chr8	+	611	2	FSM	ENSMUSG00000034880.8	ENSMUST00000048914.8	607	2	-6	2	-6	-2	multi-exon	FALSE	canonical	3	904	junction_1	0	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCACTACGTATGTATTAA	8914	False	NA	16	True	AATAAA	-16	NA	71917596	71918389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71917712_71917893
ENSMUSG00000034881.9_1	chr10	+	1792	3	FSM	ENSMUSG00000034881.9	ENSMUST00000105325.4	1765	3	-30	3	-30	-3	multi-exon	FALSE	canonical	1	1	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATTCTGGAGCACTCCC	3816	False	NA	NA	False	AATAAA	-12	NA	81164534	81171003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81164752_81168225_81169090_81170292
ENSMUSG00000034881.9_2	chr10	+	1487	2	ISM	ENSMUSG00000034881.9	ENSMUST00000105325.4	1765	3	3749	3	3749	-3	3prime_fragment	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATTCTGGAGCACTCCC	282	False	NA	NA	False	AATAAA	-12	NA	81168313	81171003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81169090_81170292
ENSMUSG00000034883.10_0	chr12	+	1470	4	FSM	ENSMUSG00000034883.10	ENSMUST00000110621.3	1500	4	25	5	-3	-1	multi-exon	FALSE	canonical	3	105	junction_3	15.6276108929747	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATATCAATGTCTCAGC	NA	False	NA	4	True	ATTAAA	-18	NA	69215612	69225778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_69215837_69218635_69218735_69221165_69221888_69225353
ENSMUSG00000034883.10_2	chr12	+	756	3	FSM	ENSMUSG00000034883.10	ENSMUST00000222520.2	767	3	9	2	9	-2	multi-exon	FALSE	canonical	3	25	junction_2	59	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTATATCAATGTCTCAG	NA	False	NA	3	True	ATTAAA	-17	NA	69215603	69225777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_69215837_69218635_69218735_69225353
ENSMUSG00000034883.10_4	chr12	+	900	2	ISM	ENSMUSG00000034883.10	ENSMUST00000110621.3	1500	4	5829	1	5801	-1	3prime_fragment	FALSE	canonical	3	105	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCAATGTCTCAGCAGTT	NA	False	NA	8	True	ATTAAA	-22	NA	69221416	69225782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_69221888_69225353
ENSMUSG00000034889.9_1	chr10	+	2595	9	FSM	ENSMUSG00000034889.9	ENSMUST00000050867.8	2715	9	116	4	116	-4	multi-exon	FALSE	canonical	3	160	junction_2	15.2786615905975	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGGCTTCTGATCTGA	5585	False	NA	12	True	AATAGA	-11	NA	81157052	81162072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81157281_81158271_81158840_81158954_81159101_81159452_81159616_81159743_81159859_81160136_81160330_81160702_81160823_81160923_81161211_81161297
ENSMUSG00000034889.9_24	chr10	+	1977	8	ISM	ENSMUSG00000034889.9	ENSMUST00000050867.8	2715	9	1725	4	-608	-4	3prime_fragment	FALSE	canonical	3	160	junction_1	15.1266759907989	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGGCTTCTGATCTGA	7194	False	NA	12	True	AATAGA	-11	NA	81158661	81162072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81158840_81158954_81159101_81159452_81159616_81159743_81159859_81160136_81160330_81160702_81160823_81160923_81161211_81161297
ENSMUSG00000034891.14_0	chr13	-	1301	6	FSM	ENSMUSG00000034891.14	ENSMUST00000036825.14	1351	6	49	1	49	-1	multi-exon	FALSE	canonical	0	0	junction_2	35.7636687156114	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGCGCCGCCTAGGCAG	NA	False	NA	-2	True	AATAAA	-15	NA	54914359	54906673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54907355_54907680_54907771_54910455_54910575_54910734_54910774_54913375_54913506_54914117
ENSMUSG00000034891.14_3	chr13	-	1406	7	NNC	ENSMUSG00000034891.14	novel	1351	6	NA	NA	-45	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	42.2679941957663	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGCGCCGCCTAGGCAG	NA	False	NA	-2	True	AATAAA	-15	NA	54914350	54906673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_54907355_54907680_54907771_54910455_54910575_54910734_54910774_54913375_54913506_54913637_54913752_54914117
ENSMUSG00000034892.9_0	chr12	-	291	3	FSM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	97	2	-35	-2	multi-exon	FALSE	canonical	3	25458	junction_2	210	1847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTGTGTGTGTGTTTT	NA	False	NA	-12	True	AATAAA	-16	NA	69205863	69204497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_69204596_69205434_69205535_69205770
ENSMUSG00000034892.9_1	chr12	-	155	2	ISM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	469	2	337	-2	3prime_fragment	FALSE	canonical	3	25878	junction_1	0	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTGTGTGTGTGTTTT	NA	False	NA	-12	True	AATAAA	-16	NA	69205491	69204497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_69204596_69205434
ENSMUSG00000034893.10_0	chr14	-	1295	1	ISM	ENSMUSG00000034893.10	ENSMUST00000226686.2	4311	18	38068	2	29341	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGCTGCCACGTGTTTG	NA	False	NA	NA	False	AATAAA	-36	NA	75941086	75939791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_75939800_75941100
ENSMUSG00000034893.10_3	chr14	-	4249	23	FSM	ENSMUSG00000034893.10	ENSMUST00000049168.9	4268	23	20	-1	20	1	multi-exon	FALSE	canonical	3	97	junction_8	10.1293289898751	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATCTTTGCTTCCTACT	NA	False	NA	NA	False	AATAAA	-19	NA	75991978	75939808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_75941501_75944529_75944629_75945361_75945490_75950640_75950717_75954307_75954443_75954548_75954638_75957131_75957253_75959541_75959632_75962150_75962276_75965147_75965254_75966710_75966872_75968034_75968175_75969415_75969508_75970350_75970478_75971337_75971382_75975402_75975484_75976943_75977070_75977975_75978069_75979120_75979196_75979780_75979947_75981005_75981068_75984492_75984640_75991704
ENSMUSG00000034893.10_5	chr14	-	4231	23	NNC	ENSMUSG00000034893.10	novel	4268	23	NA	NA	23	-3	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_20	22.2812599611096	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGCTGCCACGTGTTT	NA	False	NA	NA	False	AATAAA	-35	NA	75991975	75939792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_75941501_75944529_75944629_75945361_75945490_75950640_75950717_75954307_75954443_75954548_75954638_75957131_75957253_75959541_75959632_75962150_75962276_75965147_75965254_75966710_75966872_75968034_75968175_75969415_75969508_75970350_75970478_75971337_75971382_75975402_75975484_75976943_75977070_75977975_75978069_75979120_75979196_75979780_75979916_75981005_75981068_75984492_75984640_75991704
ENSMUSG00000034898.18_0	chr9	-	4435	6	NIC	ENSMUSG00000034898.18	novel	4640	6	NA	NA	-26	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAGAGTTTGATTTAT	NA	False	NA	NA	False	AATAAA	-24	NA	79869341	79722337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_79723180_79725179_79727989_79760903_79761083_79767361_79767536_79805476_79805759_79869192
ENSMUSG00000034902.18_1	chr10	+	4249	18	FSM	ENSMUSG00000034902.18	ENSMUST00000105327.10	2551	18	11	-1709	3	-9	multi-exon	FALSE	canonical	3	84	junction_16	35.5956725335284	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAAACAGCTCCTCTC	5003	False	NA	NA	False	AATAAA	-6	NA	81128824	81155797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81128987_81140517_81140550_81141019_81141113_81141532_81141664_81142141_81142260_81143317_81143471_81144781_81145082_81146512_81146719_81147476_81147561_81147807_81147857_81148335_81148421_81148741_81148904_81149196_81149336_81149453_81149487_81149828_81149928_81150825_81150953_81153159_81153238_81153599
ENSMUSG00000034902.18_2	chr10	+	4171	17	FSM	ENSMUSG00000034902.18	ENSMUST00000163075.8	4208	17	28	9	3	-9	multi-exon	FALSE	canonical	3	97	junction_16	27.8766815636295	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAAACAGCTCCTCTC	5003	False	NA	NA	False	AATAAA	-6	NA	81128824	81155797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81128987_81140517_81140550_81141019_81141113_81141532_81141664_81142141_81142260_81143317_81143471_81144781_81145082_81146512_81146719_81147476_81147561_81147807_81147857_81148335_81148421_81148741_81148904_81149196_81149336_81149453_81149487_81149828_81149928_81150825_81150953_81153599
ENSMUSG00000034902.18_62	chr10	+	1835	1	ISM	ENSMUSG00000034902.18	ENSMUST00000163075.8	4208	17	25166	9	1287	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAAACAGCTCCTCTC	2495	False	NA	NA	False	AATAAA	-6	NA	81153962	81155797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81154000_81155800
ENSMUSG00000034903.19_3	chr2	-	4971	14	FSM	ENSMUSG00000034903.19	ENSMUST00000112429.9	5045	14	60	14	7	-3	multi-exon	FALSE	canonical	0	0	junction_10	1.27794213275663	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCTGTTGTTTCCCGTG	NA	False	NA	NA	False	AATAAA	-17	NA	65068910	64918696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_64919902_64926031_64926209_64927976_64929737_64932412_64932511_64933503_64933739_64936058_64936173_64937355_64937431_64938101_64938262_64956236_64956462_64956551_64956650_64963922_64964152_64966688_64966891_64981322_64981512_65068706
ENSMUSG00000034903.19_5	chr2	-	4863	14	NIC	ENSMUSG00000034903.19	novel	5045	14	NA	NA	7	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	1.27794213275663	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTACAGTCTGTTGTTT	NA	False	NA	NA	False	AATAAA	-11	NA	65068811	64918702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_64919902_64926031_64926209_64927976_64929737_64932412_64932511_64933503_64933739_64936058_64936173_64937355_64937431_64938101_64938262_64956236_64956462_64956551_64956650_64963922_64964152_64966688_64966891_64981322_64981509_65068706
ENSMUSG00000034906.16_0	chr2	-	2645	18	FSM	ENSMUSG00000034906.16	ENSMUST00000110387.4	2695	18	28	22	-24	-4	multi-exon	TRUE	canonical	3	394	junction_9	30.9044738701424	751	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTCTGAGTGCCCAGTA	NA	False	NA	-9	True	AATAAA	-12	NA	126975846	126945750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975768
ENSMUSG00000034908.17_1	chr9	-	4214	26	FSM	ENSMUSG00000034908.17	ENSMUST00000038488.17	4248	26	16	18	-8	0	multi-exon	FALSE	canonical	3	112	junction_16	17.0789226826519	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGGGGTCTTACTGATG	NA	False	NA	-32	True	AATAAA	-16	NA	45866540	45849172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45858042_45858115_45858281_45858354_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
ENSMUSG00000034908.17_11	chr9	-	4196	26	NIC	ENSMUSG00000034908.17	novel	4012	27	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_14	32.7804819976766	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGGGGTCTTACTGATG	NA	False	NA	-32	True	AATAAA	-16	NA	45866540	45849172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857065_45858042_45858115_45858281_45858354_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
ENSMUSG00000034908.17_18	chr9	-	4268	27	FSM	ENSMUSG00000034908.17	ENSMUST00000114573.9	4012	27	-256	0	1	0	multi-exon	FALSE	canonical	3	14	junction_15	37.8730361062501	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGGGGTCTTACTGATG	NA	False	NA	-32	True	AATAAA	-16	NA	45866531	45849172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45857803_45857867_45858042_45858115_45858281_45858354_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
ENSMUSG00000034908.17_4	chr9	-	4222	27	NIC	ENSMUSG00000034908.17	novel	4012	27	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	42.0485771487774	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGGGGTCTTACTGATG	NA	False	NA	-32	True	AATAAA	-16	NA	45866536	45849172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45858042_45858115_45858281_45858354_45858838_45858851_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
ENSMUSG00000034908.17_6	chr9	-	4246	27	NIC	ENSMUSG00000034908.17	novel	4012	27	NA	NA	-23	1	combination_of_known_junctions	FALSE	canonical	2	5	junction_16	40.2004776385414	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGGGGTCTTACTGATGT	NA	False	NA	-31	True	AATAAA	-17	NA	45866502	45849171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45858042_45858115_45858281_45858354_45858926_45858996_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
ENSMUSG00000034910.6_0	chr9	+	2277	3	FSM	ENSMUSG00000034910.6	ENSMUST00000038489.6	7916	3	-530	6169	-530	-6169	multi-exon	FALSE	canonical	2	7	junction_2	1	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCATAAACACAAAAGCCTC	NA	False	NA	NA	False	AATAAA	-16	NA	72832396	72853294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72833243_72850201_72850288_72851949
ENSMUSG00000034917.9_1	chr10	-	2995	21	NIC	ENSMUSG00000034917.9	novel	3024	21	NA	NA	-18	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_20	33.8096140173176	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATTAGAAAATAATACAA	7822	False	NA	0	True	AATAAA	-19	NA	81121633	81109048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81121434
ENSMUSG00000034917.9_17	chr10	-	2372	17	ISM	ENSMUSG00000034917.9	ENSMUST00000045744.7	3024	21	9976	21	-1174	0	3prime_fragment	FALSE	canonical	3	101	junction_15	17.9868658679048	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTTTTTATATTA	NA	False	NA	-13	True	AATAAA	-6	NA	81117125	81109061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938
ENSMUSG00000034917.9_3	chr10	-	2874	21	FSM	ENSMUSG00000034917.9	ENSMUST00000219479.2	2901	21	40	-13	40	-8	multi-exon	FALSE	canonical	3	20	junction_20	30.1312130522487	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATTAGAAAATAATACAA	7023	False	NA	0	True	AATAAA	-19	NA	81127375	81109048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81127297
ENSMUSG00000034917.9_4	chr10	-	3011	21	FSM	ENSMUSG00000034917.9	ENSMUST00000045744.7	3024	21	6	7	6	-7	multi-exon	TRUE	canonical	3	41	junction_20	26.4920271025077	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATTAGAAAATAATACAAG	7303	False	NA	1	True	AATAAA	-20	NA	81127095	81109047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81126881
ENSMUSG00000034926.4_0	chr4	+	3976	9	FSM	ENSMUSG00000034926.4	ENSMUST00000047973.4	4028	9	46	6	46	-6	multi-exon	FALSE	canonical	3	318	junction_6	36.7353287041235	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTAGTCTTTTGTCATTT	NA	False	NA	12	True	AATAAA	-12	NA	106418280	106446304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_106418595_106421597_106421754_106428608_106428715_106429421_106429541_106430924_106431189_106435386_106435531_106442986_106443185_106443541_106443721_106443808
ENSMUSG00000034926.4_20	chr4	+	1829	1	ISM	ENSMUSG00000034926.4	ENSMUST00000047973.4	4028	9	26241	6	26241	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTAGTCTTTTGTCATTT	NA	False	NA	12	True	AATAAA	-12	NA	106444475	106446304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_106444500_106446300
ENSMUSG00000034928.17_0	chr13	-	3722	11	FSM	ENSMUSG00000034928.17	ENSMUST00000128257.8	1689	11	118	-2151	47	0	multi-exon	FALSE	canonical	3	111	junction_10	190.55762907845	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGTGCTGCCCAAGCTGC	NA	False	NA	-20	True	AATAAA	-13	NA	54835954	54827226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54835843
ENSMUSG00000034928.17_1	chr13	-	3734	11	FSM	ENSMUSG00000034928.17	ENSMUST00000037422.16	3734	11	1	-1	0	1	multi-exon	FALSE	canonical	3	393	junction_7	120.344339293546	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCCAAGCTGCCTCTG	NA	False	NA	-15	True	AATAAA	-18	NA	54841659	54827221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54841541
ENSMUSG00000034928.17_10	chr13	-	3826	11	FSM	ENSMUSG00000034928.17	ENSMUST00000177950.8	3941	11	103	12	-51	-1	multi-exon	FALSE	canonical	3	234	junction_10	160.927934181732	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTGCCCAAGCTGCCTC	NA	False	NA	-17	True	AATAAA	-16	NA	54835518	54827223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54835306
ENSMUSG00000034928.17_16	chr13	-	3890	11	NIC	ENSMUSG00000034928.17	novel	4292	11	NA	NA	-51	-1	combination_of_known_junctions	FALSE	canonical	3	163	junction_9	207.732520323612	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTGCCCAAGCTGCCTC	NA	False	NA	-17	True	AATAAA	-16	NA	54835518	54827223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831964_54832150_54832302_54835306
ENSMUSG00000034928.17_23	chr13	-	3838	11	NIC	ENSMUSG00000034928.17	novel	4292	11	NA	NA	-60	-1	combination_of_known_junctions	FALSE	canonical	3	234	junction_10	182.338257093787	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTGCCCAAGCTGCCTC	NA	False	NA	-17	True	AATAAA	-16	NA	54835527	54827223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831900_54832150_54832302_54835306
ENSMUSG00000034928.17_27	chr13	-	3719	11	FSM	ENSMUSG00000034928.17	ENSMUST00000150806.8	3772	11	55	-2	-39	-2	multi-exon	FALSE	canonical	3	111	junction_10	208.151603404826	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCTGCCCAAGCTGCCT	NA	False	NA	-18	True	AATAAA	-15	NA	54835946	54827224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831900_54832150_54832302_54835843
ENSMUSG00000034928.17_29	chr13	-	3805	11	NIC	ENSMUSG00000034928.17	novel	3797	11	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	163	junction_9	200.392015809014	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAAGCTGCCTCTGGCTG	NA	False	NA	-11	True	AATAAA	-22	NA	54841659	54827217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831964_54832150_54832302_54841541
ENSMUSG00000034928.17_3	chr13	-	1439	1	ISM	ENSMUSG00000034928.17	ENSMUST00000177950.8	3941	11	6962	9	3226	2	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCCAAGCTGCCTCTGG	NA	False	NA	-14	True	AATAAA	-19	NA	54828659	54827220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_54827200_54828700
ENSMUSG00000034928.17_4	chr13	-	3796	11	NIC	ENSMUSG00000034928.17	novel	3734	11	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	163	junction_9	182.191547553667	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTGCCCAAGCTGCCTC	NA	False	NA	-17	True	AATAAA	-16	NA	54841659	54827223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831964_54832150_54832302_54841541
ENSMUSG00000034928.17_6	chr13	-	3735	11	FSM	ENSMUSG00000034928.17	ENSMUST00000134862.8	3797	11	61	1	0	-1	multi-exon	FALSE	canonical	3	257	junction_7	149.659480154115	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTGCCCAAGCTGCCTC	NA	False	NA	-17	True	AATAAA	-16	NA	54841659	54827223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831900_54832150_54832302_54841541
ENSMUSG00000034930.17_1	chr6	+	2155	12	FSM	ENSMUSG00000034930.17	ENSMUST00000065512.11	2191	12	29	7	29	-7	multi-exon	FALSE	canonical	3	13	junction_1	17.934223251548	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCGATGCCTTCTTTCAC	3558	False	NA	11	True	ATTAAA	-11	NA	83112821	83129553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83113041_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
ENSMUSG00000034930.17_10	chr6	+	1962	11	ISM	ENSMUSG00000034930.17	ENSMUST00000087938.11	3080	12	8799	3	-1926	-3	3prime_fragment	FALSE	canonical	3	54	junction_8	8.87693640846886	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGCCTTCTTTCACTTGT	1147	False	NA	15	True	ATTAAA	-15	NA	83122889	83129557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
ENSMUSG00000034930.17_12	chr6	+	2015	11	NNC	ENSMUSG00000034930.17	novel	2191	12	NA	NA	-1903	-3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	21.0817456582703	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGCCTTCTTTCACTTGT	1170	False	NA	15	True	ATTAAA	-15	NA	83122912	83129557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126368_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
ENSMUSG00000034930.17_4	chr6	+	2634	13	FSM	ENSMUSG00000034930.17	ENSMUST00000121093.8	2597	13	-38	1	-38	-1	multi-exon	FALSE	canonical	0	0	junction_1	26.6061814037432	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTTCTTTCACTTGTCT	4768	False	NA	17	True	ATTAAA	-17	NA	83114031	83129559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83114438_83114941_83115228_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
ENSMUSG00000034930.17_5	chr6	+	2874	12	FSM	ENSMUSG00000034930.17	ENSMUST00000087938.11	3080	12	203	3	203	-3	multi-exon	FALSE	canonical	0	0	junction_1	21.3022328399382	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGCCTTCTTTCACTTGT	5030	False	NA	15	True	ATTAAA	-15	NA	83114293	83129557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83115228_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
ENSMUSG00000034930.17_6	chr6	+	2250	12	NIC	ENSMUSG00000034930.17	novel	653	6	NA	NA	-141	-4	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	15.2196045821291	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGATGCCTTCTTTCACTTG	1509	False	NA	14	True	ATTAAA	-14	NA	83119231	83129556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83119543_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
ENSMUSG00000034931.16_1	chr11	+	4247	23	FSM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	71	7	-8	-7	multi-exon	FALSE	canonical	3	151	junction_7	24.6553097226675	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAACAATGGTTTATTA	NA	False	NA	19	True	NA	NA	NA	101623846	101658177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634_101626721_101628482_101628593_101628955_101629388_101630529_101630675_101631488_101631693_101632326_101632415_101633901_101634000_101635931_101636080_101640710_101640893_101641703_101641899_101642836_101643023_101643110_101643322_101643973_101644156_101645557_101645699_101648418_101648575_101653034_101653173_101654722_101654852_101654970_101655168_101655603_101655784_101657465
ENSMUSG00000034931.16_19	chr11	+	3430	18	ISM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	5474	7	5383	-7	3prime_fragment	FALSE	canonical	3	151	junction_2	26.5681860899597	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAACAATGGTTTATTA	1292	False	NA	19	True	NA	NA	NA	101629249	101658177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_101629388_101630529_101630675_101631488_101631693_101632326_101632415_101633901_101634000_101635931_101636080_101640710_101640893_101641703_101641899_101642836_101643023_101643110_101643322_101643973_101644156_101645557_101645699_101648418_101648575_101653034_101653173_101654722_101654852_101654970_101655168_101655603_101655784_101657465
ENSMUSG00000034932.5_0	chr10	-	574	3	FSM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	18	12	8	-12	multi-exon	FALSE	canonical	3	958	junction_1	11.5	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCCACGCACATGTGTG	3112	False	NA	-12	True	AATAAA	-17	NA	81102750	81100558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81100832_81101484_81101642_81102606
ENSMUSG00000034932.5_3	chr10	-	1226	2	FSM	ENSMUSG00000034932.5	ENSMUST00000145452.2	530	2	9	-705	9	-12	multi-exon	FALSE	canonical	3	981	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCCACGCACATGTGTG	3113	False	NA	-12	True	AATAAA	-17	NA	81102749	81100558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81101642_81102606
ENSMUSG00000034936.3_1	chr11	+	1362	2	FSM	ENSMUSG00000034936.3	ENSMUST00000039388.3	1382	2	17	3	17	-3	multi-exon	FALSE	canonical	3	45	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGTTTTGATCTGGTA	2567	False	NA	NA	False	ATTAAA	-15	NA	101556383	101558655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101556464_101557373
ENSMUSG00000034936.3_2	chr11	+	988	1	ISM	ENSMUSG00000034936.3	ENSMUST00000039388.3	1382	2	1303	1	1303	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTTTTGATCTGGTAAC	3853	False	NA	NA	False	ATTAAA	-17	NA	101557669	101558657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_101557700_101558700
ENSMUSG00000034940.16_0	chr11	+	4064	22	NIC	ENSMUSG00000034940.16	novel	3990	23	NA	NA	-23	61	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	19.4608741731395	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCCCTGCCACTGGTCT	1457	False	NA	NA	False	AATAAA	-19	NA	83855278	83931841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_83855373_83862377_83862419_83867908_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83876074_83876378_83877639_83877874_83878738_83878817_83880505_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443_83900377_83910416_83910780_83914086_83914251_83915103_83915158_83915820_83915918_83917443_83917593_83930036_83930148_83931622
ENSMUSG00000034940.16_10	chr11	+	4059	22	NIC	ENSMUSG00000034940.16	novel	3990	23	NA	NA	-15	61	combination_of_known_junctions	FALSE	canonical	3	33	junction_7	16.6746919453981	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCCCTGCCACTGGTCT	1465	False	NA	NA	False	AATAAA	-19	NA	83855286	83931841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_83855373_83862377_83862419_83867905_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83876074_83876378_83877639_83877874_83878738_83878817_83880505_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443_83900377_83910416_83910780_83914086_83914251_83915103_83915158_83915820_83915918_83917443_83917593_83930036_83930148_83931622
ENSMUSG00000034940.16_14	chr11	+	5144	14	ISM	ENSMUSG00000034940.16	ENSMUST00000049714.15	3995	22	19	28873	19	20794	5prime_fragment	FALSE	canonical	3	32	junction_6	19.2986494300116	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTGTGGGGATGTGTGT	1451	False	NA	9	True	AATAAA	-20	NA	83855272	83902907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83855373_83862377_83862419_83867905_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83877639_83877874_83878738_83878817_83880505_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443
ENSMUSG00000034940.16_23	chr11	+	5428	15	ISM	ENSMUSG00000034940.16	ENSMUST00000183456.8	3990	23	-13	28847	-13	20794	5prime_fragment	FALSE	canonical	3	30	junction_2	23.2691658989456	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTGTGGGGATGTGTGT	1467	False	NA	9	True	AATAAA	-20	NA	83855288	83902907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83855373_83862377_83862419_83867908_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83876074_83876378_83877639_83877874_83878738_83878817_83880505_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443
ENSMUSG00000034940.16_3	chr11	+	3767	21	FSM	ENSMUSG00000034940.16	ENSMUST00000183714.8	3651	21	-29	-87	19	61	multi-exon	FALSE	canonical	3	30	junction_2	19.49480700084	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCCCTGCCACTGGTCT	1451	False	NA	NA	False	AATAAA	-19	NA	83855272	83931841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83855373_83862377_83862419_83867908_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83877639_83877874_83878738_83878817_83880505_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443_83900377_83910416_83910780_83914086_83914251_83915103_83915158_83915820_83915918_83917443_83917593_83930036_83930148_83931622
ENSMUSG00000034940.16_32	chr11	+	2571	1	ISM	ENSMUSG00000034940.16	ENSMUST00000092834.12	7115	20	77567	13	15340	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACTGTAAAACTGGGTG	NA	False	NA	10	True	AATAAA	-20	NA	83932820	83935391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83932800_83935400
ENSMUSG00000034940.16_4	chr11	+	3765	21	NIC	ENSMUSG00000034940.16	novel	3651	21	NA	NA	-24	61	combination_of_known_junctions	FALSE	canonical	3	32	junction_6	16.4392061852147	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCCCTGCCACTGGTCT	1456	False	NA	NA	False	AATAAA	-19	NA	83855277	83931841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_83855373_83862377_83862419_83867905_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83877639_83877874_83878738_83878817_83880505_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443_83900377_83910416_83910780_83914086_83914251_83915103_83915158_83915820_83915918_83917443_83917593_83930036_83930148_83931622
ENSMUSG00000034940.16_8	chr11	+	5434	15	NIC	ENSMUSG00000034940.16	novel	3990	23	NA	NA	-17	20793	combination_of_known_junctions	FALSE	canonical	3	33	junction_7	19.5830257610816	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTGTGGGGATGTGTG	1463	False	NA	8	True	AATAAA	-19	NA	83855284	83902906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_83855373_83862377_83862419_83867905_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83876074_83876378_83877639_83877874_83878738_83878817_83880505_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443
ENSMUSG00000034947.14_0	chr11	+	1683	9	FSM	ENSMUSG00000034947.14	ENSMUST00000039581.14	2304	9	19	602	4	420	multi-exon	FALSE	canonical	3	13	junction_1	4.99843725578305	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAGAGCCCATGTGAGTG	3707	False	NA	NA	False	ATTAAA	-21	NA	101473086	101482012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101473152_101473450_101473531_101474383_101474611_101475271_101475336_101477064_101477219_101479678_101479820_101479923_101479968_101480760_101480815_101481158
ENSMUSG00000034947.14_3	chr11	+	1594	3	ISM	ENSMUSG00000034947.14	ENSMUST00000128659.2	1069	5	3059	-1020	3059	-2	3prime_fragment	FALSE	canonical	3	25	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAAAGGGGCATTCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	101479881	101482612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_101479968_101480760_101480815_101481158
ENSMUSG00000034951.11_0	chr7	-	2878	17	FSM	ENSMUSG00000034951.11	ENSMUST00000057576.8	2902	17	22	2	5	-2	multi-exon	TRUE	canonical	3	174	junction_8	14.1585607937389	400	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAAGGGTGTTTCCTTCTT	8946	False	NA	-2	True	AATAAA	-15	NA	121580912	121522063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_121522692_121524646_121524791_121528409_121528525_121529752_121529837_121534880_121535022_121536176_121536364_121540392_121540459_121543000_121543118_121548967_121549123_121550385_121550514_121555152_121555352_121562360_121562484_121563423_121563507_121570502_121570672_121576489_121576607_121576838_121576988_121580639
ENSMUSG00000034957.11_0	chr7	+	2592	1	FSM	ENSMUSG00000034957.11	ENSMUST00000042985.11	2626	1	30	4	30	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTTTGGTGTCTTTTTA	NA	False	NA	NA	False	TATAAA	-11	NA	34818757	34821349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_34818800_34821300
ENSMUSG00000034973.17_1	chr9	+	7808	37	NIC	ENSMUSG00000034973.17	novel	9187	38	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_9	4.02423215588321	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCTTGGTCTCAAGCCT	NA	False	NA	13	True	AATACA	-18	NA	86349260	86436678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_86349350_86367465_86367657_86369306_86369489_86371630_86371802_86374033_86374224_86376448_86376548_86382848_86382949_86383926_86384037_86385045_86385155_86386229_86386351_86388247_86388368_86388457_86388573_86389556_86389791_86394610_86395233_86395877_86396153_86397310_86397464_86399019_86399118_86400206_86400467_86401925_86403913_86404815_86404928_86405006_86405190_86406276_86406403_86408824_86408960_86413767_86413824_86414982_86415088_86417960_86418028_86418167_86418313_86418495_86418576_86424411_86424522_86424787_86424938_86425061_86425124_86427293_86427447_86430222_86430360_86430853_86430910_86432055_86432221_86433698_86433829_86436068
ENSMUSG00000034973.17_13	chr9	+	3655	19	ISM	ENSMUSG00000034973.17	ENSMUST00000034987.15	8933	37	35380	1181	-354	0	3prime_fragment	FALSE	canonical	3	13	junction_1	2.79825783543623	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCTTGGTCTCAAGCCT	NA	False	NA	13	True	AATACA	-18	NA	86402839	86436678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_86403913_86404815_86404928_86405006_86405190_86406276_86406403_86408824_86408960_86413767_86413824_86414982_86415088_86417960_86418028_86418167_86418313_86418495_86418576_86424411_86424522_86424787_86424938_86425061_86425124_86427293_86427447_86430222_86430360_86430853_86430910_86432055_86432221_86433698_86433829_86436068
ENSMUSG00000034973.17_3	chr9	+	7816	37	NIC	ENSMUSG00000034973.17	novel	9187	38	NA	NA	-15	-1	combination_of_known_junctions	FALSE	canonical	2	5	junction_13	4.41893722209758	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCTTGGTCTCAAGCC	NA	False	NA	12	True	AATACA	-17	NA	86349248	86436677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_86349350_86367465_86367657_86369306_86369489_86371630_86371802_86374033_86374224_86376448_86376548_86382848_86382949_86383926_86384037_86385045_86385155_86386229_86386351_86388247_86388368_86388457_86388573_86389556_86389791_86394613_86395233_86395877_86396153_86397310_86397464_86399019_86399118_86400206_86400467_86401925_86403913_86404815_86404928_86405006_86405190_86406276_86406403_86408824_86408960_86413767_86413824_86414982_86415088_86417960_86418028_86418167_86418313_86418495_86418576_86424411_86424522_86424787_86424938_86425061_86425124_86427293_86427447_86430222_86430360_86430853_86430910_86432055_86432221_86433698_86433829_86436068
ENSMUSG00000034974.14_1	chr10	+	1493	9	FSM	ENSMUSG00000034974.14	ENSMUST00000178422.9	1730	9	37	200	25	14	multi-exon	FALSE	canonical	3	321	junction_1	26.7675176286483	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTCGCCTGTCTCCCAC	8592	False	NA	9	True	AATAAA	-14	NA	81018875	81028831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81018931_81019809_81019910_81025772_81026134_81026215_81026346_81026431_81026481_81026875_81026903_81027592_81027746_81028130_81028177_81028259
ENSMUSG00000034974.14_21	chr10	+	1436	8	FSM	ENSMUSG00000034974.14	ENSMUST00000219850.2	1482	8	57	-11	57	11	multi-exon	FALSE	canonical	3	336	junction_2	22.2609752798067	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTACTGTCGCCTGTCTCC	9525	False	NA	6	True	AATAAA	-11	NA	81019808	81028828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81019910_81025772_81026134_81026215_81026346_81026431_81026481_81026875_81026903_81027592_81027746_81028130_81028177_81028259
ENSMUSG00000034981.10_0	chr5	+	4841	4	FSM	ENSMUSG00000034981.10	ENSMUST00000040576.10	5068	4	74	153	74	-153	multi-exon	FALSE	canonical	2	9	junction_1	0.816496580927726	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTAGCTGTGGTGATT	NA	False	NA	NA	False	ATTAAA	-14	NA	91665547	91774600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_91665817_91741676_91742361_91760856_91760936_91770791
ENSMUSG00000034981.10_1	chr5	+	1984	1	ISM	ENSMUSG00000034981.10	ENSMUST00000040576.10	5068	4	107143	153	107143	-153	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTAGCTGTGGTGATT	2428	False	NA	NA	False	ATTAAA	-14	NA	91772616	91774600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_91772600_91774600
ENSMUSG00000034987.5_0	chr13	+	2804	3	FSM	ENSMUSG00000034987.5	ENSMUST00000038101.4	2789	3	-28	13	-28	-13	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAACAGAAAGTCGCAGAGG	NA	False	NA	NA	False	AATAAA	-5	NA	54346119	54376438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_54346213_54367587_54369099_54375238
ENSMUSG00000034993.8_0	chr11	-	2724	6	FSM	ENSMUSG00000034993.8	ENSMUST00000040430.8	2766	6	41	1	41	-1	multi-exon	TRUE	canonical	3	320	junction_5	13.7462722219517	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTGACCAGATGTTGTA	NA	False	NA	-12	True	AATAAA	-14	NA	101357015	101349571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
ENSMUSG00000034993.8_4	chr11	-	1176	1	ISM	ENSMUSG00000034993.8	ENSMUST00000040430.8	2766	6	6309	1	6309	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTGACCAGATGTTGTA	NA	False	NA	-12	True	AATAAA	-14	NA	101350747	101349571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_101349600_101350700
ENSMUSG00000034994.11_1	chr10	+	3071	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	3	15	-3	multi-exon	TRUE	canonical	3	5618	junction_10	706.418033369635	13539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGCTCGCAACTCTGT	2196	False	NA	29	True	AATAAA	-17	NA	81012479	81018329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ENSMUSG00000034994.11_125	chr10	+	2894	13	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	1127	3	1127	-3	3prime_fragment	FALSE	canonical	3	5618	junction_9	705.177573184388	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGCTCGCAACTCTGT	3308	False	NA	29	True	AATAAA	-17	NA	81013591	81018329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ENSMUSG00000034994.11_143	chr10	+	2474	11	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	2166	3	-1238	-3	3prime_fragment	FALSE	canonical	3	5618	junction_7	752.019919948933	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGCTCGCAACTCTGT	4347	False	NA	29	True	AATAAA	-17	NA	81014630	81018329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ENSMUSG00000034994.11_148	chr10	+	2326	10	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	2502	3	-902	-3	3prime_fragment	FALSE	canonical	3	5618	junction_6	791.628248580492	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGCTCGCAACTCTGT	4683	False	NA	29	True	AATAAA	-17	NA	81014966	81018329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ENSMUSG00000034994.11_166	chr10	+	1997	8	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	3009	3	-395	-3	3prime_fragment	FALSE	canonical	3	5618	junction_4	791.382309117201	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGCTCGCAACTCTGT	5190	False	NA	29	True	AATAAA	-17	NA	81015473	81018329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ENSMUSG00000034998.19_0	chr17	+	5066	6	FSM	ENSMUSG00000034998.19	ENSMUST00000112238.9	5085	6	10	9	10	-9	multi-exon	FALSE	canonical	3	257	junction_4	10.9288608738514	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTTGTGCTTTGTT	NA	False	NA	6	True	AATAAA	-10	NA	88748148	88797952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_88748313_88770140_88770692_88783283_88783379_88786703_88786769_88791828_88791898_88793830
ENSMUSG00000034998.19_13	chr17	+	5038	6	NNC	ENSMUSG00000034998.19	novel	5085	6	NA	NA	223	-9	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	100.061181284252	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTTGTGCTTTGTT	NA	False	NA	6	True	AATAAA	-10	NA	88748425	88797952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_88748562_88770140_88770692_88783283_88783379_88786703_88786769_88791828_88791898_88793830
ENSMUSG00000034998.19_16	chr17	+	4762	5	ISM	ENSMUSG00000034998.19	ENSMUST00000112238.9	5085	6	22142	9	22078	-9	3prime_fragment	FALSE	canonical	3	257	junction_3	8.07774721070176	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTTGTGCTTTGTT	NA	False	NA	6	True	AATAAA	-10	NA	88770280	88797952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_88770692_88783283_88783379_88786703_88786769_88791828_88791898_88793830
ENSMUSG00000034998.19_19	chr17	+	2838	1	ISM	ENSMUSG00000034998.19	ENSMUST00000112238.9	5085	6	46976	9	46912	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTTGTGCTTTGTT	NA	False	NA	6	True	AATAAA	-10	NA	88795114	88797952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_88795100_88798000
ENSMUSG00000034998.19_2	chr17	+	4998	5	NIC	ENSMUSG00000034998.19	novel	5085	6	NA	NA	9	-9	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	115.789410137542	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTTGTGCTTTGTT	NA	False	NA	6	True	AATAAA	-10	NA	88748147	88797952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_88748313_88770140_88770692_88783283_88783379_88786703_88786769_88793830
ENSMUSG00000035000.9_12	chr2	-	1782	9	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	55462	1651	938	-1651	3prime_fragment	FALSE	canonical	3	241	junction_6	20.4110111214511	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAAATGAGAATGTTT	NA	False	NA	-48	True	ATTAAA	-30	NA	62187113	62162067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959
ENSMUSG00000035000.9_3	chr2	-	3290	26	FSM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	327	1651	-45	-1651	multi-exon	FALSE	canonical	3	167	junction_12	33.8302586451833	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAAATGAGAATGTTT	NA	False	NA	-48	True	ATTAAA	-30	NA	62242248	62162067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
ENSMUSG00000035000.9_30	chr2	-	3173	25	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	930	1651	558	-1651	3prime_fragment	FALSE	canonical	3	167	junction_12	33.8549807594425	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAAATGAGAATGTTT	NA	False	NA	-48	True	ATTAAA	-30	NA	62241645	62162067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558
ENSMUSG00000035007.6_1	chr11	+	3197	5	FSM	ENSMUSG00000035007.6	ENSMUST00000040561.6	3223	5	5	21	5	-21	multi-exon	FALSE	canonical	3	47	junction_3	4.27200187265877	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCTCTGCAAAGCCCAT	NA	False	NA	14	True	AATAAA	-18	NA	101315915	101326478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101316437_101320277_101320437_101322173_101322373_101322907_101323025_101324277
ENSMUSG00000035007.6_10	chr11	+	4967	3	ISM	ENSMUSG00000035007.6	ENSMUST00000040561.6	3223	5	22	22	22	-22	intron_retention	FALSE	canonical	3	54	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTCTCTGCAAAGCCCA	NA	False	NA	13	True	AATAAA	-17	NA	101315932	101326477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_101316437_101320277_101320437_101322173
ENSMUSG00000035007.6_11	chr11	+	2440	3	ISM	ENSMUSG00000035007.6	ENSMUST00000040561.6	3223	5	6338	23	6338	-23	3prime_fragment	FALSE	canonical	3	47	junction_1	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCTTCTCTGCAAAGCCC	68	False	NA	12	True	AATAAA	-16	NA	101322248	101326476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_101322373_101322907_101323025_101324277
ENSMUSG00000035007.6_12	chr11	+	2021	1	ISM	ENSMUSG00000035007.6	ENSMUST00000040561.6	3223	5	8546	22	8546	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTCTCTGCAAAGCCCA	1408	False	NA	13	True	AATAAA	-17	NA	101324456	101326477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_101324500_101326500
ENSMUSG00000035007.6_5	chr11	+	3731	4	NIC	ENSMUSG00000035007.6	novel	3223	5	NA	NA	5	-22	intron_retention	FALSE	canonical	3	54	junction_2	2.35702260395516	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTCTCTGCAAAGCCCA	NA	False	NA	13	True	AATAAA	-17	NA	101315915	101326477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101316437_101320277_101320437_101322173_101323025_101324277
ENSMUSG00000035011.16_1	chr10	+	3020	3	FSM	ENSMUSG00000035011.16	ENSMUST00000119606.8	1841	3	-33	-1146	-33	1131	multi-exon	FALSE	canonical	3	10	junction_1	36.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGCTCCGGTAGAATCCAC	NA	False	NA	5	True	AATAAA	-14	NA	80972349	80985423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80972494_80979795_80981052_80983803
ENSMUSG00000035011.16_14	chr10	+	2452	2	ISM	ENSMUSG00000035011.16	ENSMUST00000117956.2	1863	3	6433	-1131	6433	1131	3prime_fragment	FALSE	canonical	3	83	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGCTCCGGTAGAATCCAC	NA	False	NA	5	True	AATAAA	-14	NA	80980219	80985423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80981052_80983803
ENSMUSG00000035011.16_18	chr10	+	2919	1	ISM	ENSMUSG00000035011.16	ENSMUST00000048128.15	5938	3	13022	11	11340	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTACGATATCTCTTTGC	NA	False	NA	11	True	CATAAA	-27	NA	80985126	80988045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80985100_80988000
ENSMUSG00000035011.16_2	chr10	+	3011	3	FSM	ENSMUSG00000035011.16	ENSMUST00000048128.15	5938	3	297	2630	2	1134	multi-exon	FALSE	canonical	3	9	junction_1	37	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCGGTAGAATCCACTTG	NA	False	NA	8	True	AATAAA	-17	NA	80972401	80985426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80972534_80979795_80981052_80983803
ENSMUSG00000035011.16_6	chr10	+	2999	3	FSM	ENSMUSG00000035011.16	ENSMUST00000117956.2	1863	3	-5	-1131	-5	1131	multi-exon	FALSE	canonical	3	48	junction_1	17.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGCTCCGGTAGAATCCAC	NA	False	NA	5	True	AATAAA	-14	NA	80973781	80985423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80973905_80979795_80981052_80983803
ENSMUSG00000035021.14_0	chr12	-	5597	27	FSM	ENSMUSG00000035021.14	ENSMUST00000173433.8	5788	27	189	2	18	-2	multi-exon	FALSE	canonical	2	19	junction_26	7.265566842199	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCTGAATTCTGAAG	NA	False	NA	-10	True	AATAAA	-16	NA	55033103	54940337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_54941287_54941742_54941831_54942814_54942958_54945122_54945584_54946784_54947012_54947095_54947344_54955783_54955933_54958094_54958247_54959361_54959526_54963252_54963853_54965222_54965348_54967822_54967931_54969227_54969394_54969824_54970050_54970169_54970266_54974348_54974496_54976311_54976451_54977036_54977133_54981524_54981692_54982266_54982367_54988286_54988422_54990761_54990850_54993586_54993689_55001482_55001627_55021888_55022168_55032450_55032593_55032946
ENSMUSG00000035021.14_1	chr12	-	4665	21	NNC	ENSMUSG00000035021.14	novel	5788	27	NA	NA	6372	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_20	9.86711710683521	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCTGAATTCTGAAG	1907	False	NA	-10	True	AATAAA	-16	NA	54984465	54940337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_54941287_54941742_54941831_54942814_54942958_54945122_54945584_54946784_54947012_54947095_54947344_54955783_54955933_54958094_54958247_54959361_54959526_54963252_54963853_54965222_54965348_54967822_54967931_54969227_54969394_54969824_54970050_54970169_54970266_54974348_54974496_54976311_54976451_54977036_54977133_54981524_54981692_54982266_54982367_54984350
ENSMUSG00000035021.14_2	chr12	-	5558	26	ISM	ENSMUSG00000035021.14	ENSMUST00000173433.8	5788	27	582	2	11	-2	3prime_fragment	TRUE	canonical	2	24	junction_21	6.49307323229917	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCTGAATTCTGAAG	NA	False	NA	-10	True	AATAAA	-16	NA	55032710	54940337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_54941287_54941742_54941831_54942814_54942958_54945122_54945584_54946784_54947012_54947095_54947344_54955783_54955933_54958094_54958247_54959361_54959526_54963252_54963853_54965222_54965348_54967822_54967931_54969227_54969394_54969824_54970050_54970169_54970266_54974348_54974496_54976311_54976451_54977036_54977133_54981524_54981692_54982266_54982367_54988286_54988422_54990761_54990850_54993586_54993689_55001482_55001627_55021888_55022168_55032450
ENSMUSG00000035021.14_5	chr12	-	453	1	ISM	ENSMUSG00000035021.14	ENSMUST00000038926.13	6188	27	92331	564	1149	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCTGAATTCTGAAG	NA	False	NA	-10	True	AATAAA	-16	NA	54940790	54940337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_54940300_54940800
ENSMUSG00000035021.14_8	chr12	-	3065	10	ISM	ENSMUSG00000035021.14	ENSMUST00000173433.8	5788	27	69556	2	13388	-2	3prime_fragment	TRUE	canonical	2	33	junction_1	5.73488351136175	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCTGAATTCTGAAG	NA	False	NA	-10	True	AATAAA	-16	NA	54963736	54940337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_54941287_54941742_54941831_54942814_54942958_54945122_54945584_54946784_54947012_54947095_54947344_54955783_54955933_54958094_54958247_54959361_54959526_54963252
ENSMUSG00000035021.14_9	chr12	-	5517	27	NIC	ENSMUSG00000035021.14	novel	5788	27	NA	NA	12	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	10.0899064920222	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCTGAATTCTGAAG	NA	False	NA	-10	True	AATAAA	-16	NA	55033109	54940337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_54941287_54941742_54941831_54942814_54942958_54945122_54945584_54946784_54947012_54947095_54947344_54955783_54955933_54958094_54958247_54959361_54959526_54963252_54963853_54965222_54965348_54967822_54967931_54969227_54969394_54969824_54970050_54970169_54970266_54974348_54974410_54976311_54976451_54977036_54977133_54981524_54981692_54982266_54982367_54988286_54988422_54990761_54990850_54993586_54993689_55001482_55001627_55021888_55022168_55032450_55032593_55032946
ENSMUSG00000035024.17_0	chr9	+	5056	35	FSM	ENSMUSG00000035024.17	ENSMUST00000216677.2	5149	35	82	11	82	-10	multi-exon	FALSE	canonical	3	212	junction_3	21.5907395566265	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATAAATATAACCTAGC	NA	False	NA	NA	False	AATAAA	-5	NA	26942026	27006597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
ENSMUSG00000035024.17_12	chr9	+	6717	35	NIC	ENSMUSG00000035024.17	novel	5149	35	NA	NA	83	-10	combination_of_known_junctions	FALSE	canonical	3	41	junction_24	41.1214338069467	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATAAATATAACCTAGC	NA	False	NA	NA	False	AATAAA	-5	NA	26942027	27006597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26985761_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
ENSMUSG00000035024.17_2	chr9	+	5485	36	FSM	ENSMUSG00000035024.17	ENSMUST00000073127.14	5499	36	4	10	0	-10	multi-exon	FALSE	canonical	1	2	junction_1	46.2265053396681	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATAAATATAACCTAGC	NA	False	NA	NA	False	AATAAA	-5	NA	26941474	27006597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_26941796_26941918_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
ENSMUSG00000035027.19_0	chr10	+	1518	11	FSM	ENSMUSG00000035027.19	ENSMUST00000105331.8	1556	11	23	15	-2	-15	multi-exon	FALSE	canonical	3	562	junction_7	62.3128397683816	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAGAAAGCTAGCTGC	1155	False	NA	-2	True	NA	NA	NA	80941803	80959702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80942073_80944581_80944793_80950859_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955538_80956879_80956945_80957736_80957799_80958400_80958447_80959453
ENSMUSG00000035027.19_1	chr10	+	1517	11	FSM	ENSMUSG00000035027.19	ENSMUST00000143517.8	2405	11	55	833	-2	-19	multi-exon	FALSE	canonical	3	212	junction_7	154.06131896099	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAGAAAGCTAG	1155	False	NA	-6	True	NA	NA	NA	80941803	80959698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80942073_80944581_80944793_80950859_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955538_80956876_80956945_80957736_80957799_80958400_80958447_80959453
ENSMUSG00000035041.9_0	chr10	-	1972	10	ISM	ENSMUSG00000035041.9	ENSMUST00000117422.2	2294	12	6233	11	-66	-11	3prime_fragment	FALSE	canonical	0	0	junction_1	2.16595429884644	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAACTGGGGCTGCGGCT	NA	False	NA	NA	False	NA	NA	NA	80928475	80920168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80920969_80921483_80921581_80921863_80921949_80922350_80922420_80924343_80924451_80925140_80925279_80925910_80926018_80926971_80927270_80927631_80927764_80928336
ENSMUSG00000035041.9_3	chr10	-	2021	11	NIC	ENSMUSG00000035041.9	novel	2294	12	NA	NA	-11	-9	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	2.28254244210267	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGGGGCTGCGGCTCA	7303	False	NA	NA	False	NA	NA	NA	80934599	80920166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80920969_80921483_80921581_80921863_80921949_80922350_80922420_80924343_80924451_80925140_80925279_80925910_80926018_80926971_80927270_80927631_80927764_80928640_80928717_80934489
ENSMUSG00000035047.10_2	chr9	-	2587	19	FSM	ENSMUSG00000035047.10	ENSMUST00000038671.10	2598	19	2	9	2	-9	multi-exon	FALSE	canonical	3	91	junction_10	26.4070697604511	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGGCATCTTTCCCCAT	NA	False	NA	-18	True	AATAAA	-10	NA	21199263	21184761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191556_21191658_21191786_21192337_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
ENSMUSG00000035047.10_3	chr9	-	1530	8	ISM	ENSMUSG00000035047.10	ENSMUST00000038671.10	2598	19	8462	-4	-4114	4	3prime_fragment	TRUE	canonical	3	95	junction_7	28.7373752227631	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCATCCCTTCCCATTAT	NA	False	NA	-5	True	AATAAA	-23	NA	21190803	21184748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656
ENSMUSG00000035048.14_0	chr9	+	381	3	FSM	ENSMUSG00000035048.14	ENSMUST00000190279.7	589	3	18	190	-10	-7	multi-exon	TRUE	canonical	3	1105	junction_1	209.5	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCATATGCCCACTTGG	NA	False	NA	10	True	AATAAA	-10	NA	102503512	102511434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_102503546_102506961_102507088_102511212
ENSMUSG00000035048.14_1	chr9	+	3735	2	ISM	ENSMUSG00000035048.14	ENSMUST00000190279.7	589	3	80	190	52	-7	3prime_fragment	FALSE	canonical	3	1524	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCATATGCCCACTTGG	NA	False	NA	10	True	AATAAA	-10	NA	102503574	102511434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_102507088_102511212
ENSMUSG00000035049.5_2	chr19	-	4346	34	FSM	ENSMUSG00000035049.5	ENSMUST00000038677.5	4340	34	-7	1	-7	-1	multi-exon	TRUE	canonical	3	269	junction_16	39.9184430265499	835	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTGATGAGTGGCTTGG	NA	False	NA	-9	True	AATAAA	-19	NA	41884619	41851290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_41851752_41853610_41853694_41853959_41854028_41855144_41855212_41857208_41857259_41859248_41859375_41859573_41859744_41859860_41860029_41860171_41860264_41861347_41861506_41862181_41862290_41862674_41862781_41862967_41863049_41863155_41863315_41864973_41865068_41865539_41865608_41865774_41865930_41866222_41866386_41866467_41866533_41868540_41868663_41868797_41868941_41870597_41870713_41871861_41871960_41872151_41872264_41874085_41874178_41874525_41874625_41875238_41875367_41875449_41875589_41878204_41878322_41878507_41878614_41879522_41879600_41880976_41881061_41883586_41883817_41884377
ENSMUSG00000035051.16_0	chr17	-	4744	24	FSM	ENSMUSG00000035051.16	ENSMUST00000086555.11	4737	24	-8	1	-8	-1	multi-exon	FALSE	canonical	3	55	junction_22	13.7365159867987	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTGGTGTGGAGTAGAC	870	False	NA	-8	True	AATAAA	-12	NA	80597580	80545740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80546360_80549380_80549582_80553103_80553239_80554537_80554613_80555699_80555835_80557281_80557366_80557448_80557545_80558660_80558938_80560515_80560717_80561693_80561868_80562980_80563078_80565502_80565620_80567650_80567860_80571376_80571432_80572504_80572639_80574943_80575069_80576180_80576377_80577795_80577918_80580360_80580540_80582192_80583032_80583278_80583465_80585651_80585811_80588624_80588858_80597484
ENSMUSG00000035051.16_2	chr17	-	4583	23	FSM	ENSMUSG00000035051.16	ENSMUST00000038166.9	4913	23	327	3	-6	-1	multi-exon	FALSE	canonical	1	1	junction_21	20.6034980581309	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTGGTGTGGAGTAGAC	872	False	NA	-8	True	AATAAA	-12	NA	80597578	80545740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80546360_80549380_80549582_80553103_80553239_80554537_80554613_80555699_80555835_80557281_80557366_80557448_80557545_80558660_80558938_80560515_80560717_80561693_80561868_80562980_80563078_80565502_80565620_80567650_80567860_80571376_80571432_80572504_80572639_80574943_80575069_80576180_80576377_80577795_80577918_80580360_80580540_80582192_80583032_80583278_80583465_80588624_80588858_80597484
ENSMUSG00000035051.16_4	chr17	-	4979	24	NIC	ENSMUSG00000035051.16	novel	4737	24	NA	NA	86	-1	combination_of_known_junctions	FALSE	canonical	3	13	junction_23	19.0429819272227	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTGGTGTGGAGTAGAC	964	False	NA	-8	True	AATAAA	-12	NA	80597486	80545740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_80546360_80549380_80549582_80553103_80553239_80554537_80554613_80555699_80555835_80557281_80557366_80557448_80557545_80558660_80558938_80560515_80560717_80561693_80561868_80562980_80563078_80565502_80565620_80567650_80567860_80571376_80571432_80572504_80572639_80574943_80575069_80576180_80576377_80577795_80577918_80580360_80580540_80582192_80583032_80583278_80583465_80585651_80585811_80588624_80588858_80597155
ENSMUSG00000035062.14_0	chrX	-	2132	5	FSM	ENSMUSG00000035062.14	ENSMUST00000044382.7	2219	5	87	0	-14	0	multi-exon	FALSE	canonical	3	32	junction_1	3.76662979332984	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGCTAACTGAGTGC	968	False	NA	NA	False	AATAAA	-15	NA	94702028	94682804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_94684258_94685769_94685933_94686913_94687087_94688912_94689085_94701857
ENSMUSG00000035064.18_0	chr7	+	3096	18	FSM	ENSMUSG00000035064.18	ENSMUST00000047875.16	6580	18	28	3456	28	-7	multi-exon	FALSE	canonical	3	73	junction_5	8.32971086202773	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGGTTTGGCCTTTA	NA	False	NA	2	True	AATATA	-9	NA	120442081	120503217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_120442324_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
ENSMUSG00000035064.18_10	chr7	+	2294	13	ISM	ENSMUSG00000035064.18	ENSMUST00000106488.3	2537	18	29157	-498	4126	-7	3prime_fragment	FALSE	canonical	3	74	junction_9	8.42738591339766	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGGTTTGGCCTTTA	NA	False	NA	2	True	AATATA	-9	NA	120479568	120503217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
ENSMUSG00000035064.18_14	chr7	+	1717	9	ISM	ENSMUSG00000035064.18	ENSMUST00000106488.3	2537	18	35430	-496	-1305	-9	3prime_fragment	FALSE	canonical	3	74	junction_5	9.07950989866744	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAAACAGGTTTGGCCTT	NA	False	NA	0	True	AATATA	-7	NA	120485841	120503215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
ENSMUSG00000035064.18_18	chr7	+	3272	1	ISM	ENSMUSG00000035064.18	ENSMUST00000047875.16	6580	18	61098	250	11944	-250	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTTTCCGACCTGGCC	NA	False	NA	NA	False	AATAAA	-12	NA	120503151	120506423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_120503200_120506400
ENSMUSG00000035064.18_7	chr7	+	3046	18	FSM	ENSMUSG00000035064.18	ENSMUST00000106489.9	3047	18	-6	7	-6	-7	multi-exon	FALSE	canonical	2	9	junction_1	20.5168510369059	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGGTTTGGCCTTTA	NA	False	NA	2	True	AATATA	-9	NA	120442816	120503217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_120443009_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
ENSMUSG00000035064.18_9	chr7	+	2743	17	ISM	ENSMUSG00000035064.18	ENSMUST00000106488.3	2537	18	7266	-498	7266	-7	3prime_fragment	FALSE	canonical	3	73	junction_4	8.58573489865603	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGGTTTGGCCTTTA	NA	False	NA	2	True	AATATA	-9	NA	120457677	120503217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
ENSMUSG00000035067.10_0	chr14	+	4598	3	FSM	ENSMUSG00000035067.10	ENSMUST00000176510.2	4315	3	-300	17	-128	-17	multi-exon	FALSE	canonical	2	12	junction_1	1.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTATGGAAAACCCAACAC	8726	False	NA	1	True	AATAAA	-36	NA	63843823	63903614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_63844734_63898268_63898376_63900033
ENSMUSG00000035067.10_10	chr14	+	2684	3	FSM	ENSMUSG00000035067.10	ENSMUST00000119973.3	2963	3	-136	415	-136	375	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAACGAAAACAGCAAACAG	8718	False	NA	NA	False	ATTAAA	-36	NA	63843815	64057843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_63844734_64035655_64035853_64056274
ENSMUSG00000035067.10_4	chr14	+	3656	2	ISM	ENSMUSG00000035067.10	ENSMUST00000176862.2	796	4	1703	-3076	1703	-9	3prime_fragment	FALSE	canonical	3	15	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCCAACACTTGAAATT	NA	False	NA	9	True	AATAAA	-44	NA	63898308	63903622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_63898376_63900033
ENSMUSG00000035067.10_5	chr14	+	3576	1	ISM	ENSMUSG00000035067.10	ENSMUST00000176510.2	4315	3	55919	13	3437	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAAAACCCAACACTTGA	276	False	NA	5	True	AATAAA	-40	NA	63900042	63903618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_63900000_63903600
ENSMUSG00000035069.4_0	chr4	+	1734	8	NIC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	23	-8	combination_of_known_splicesites	FALSE	canonical	2	9	junction_7	27.5680975041804	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATCTGTCCTTGCCTTA	65	False	NA	8	True	AATAAA	-20	NA	103171031	103223632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103223169
ENSMUSG00000035069.4_1	chr4	+	1868	9	FSM	ENSMUSG00000035069.4	ENSMUST00000035780.4	1915	9	32	15	32	-15	multi-exon	FALSE	canonical	3	69	junction_1	14.2560294261761	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCACTGTCATCTGTCCT	74	False	NA	1	True	AATAAA	-13	NA	103171040	103223625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
ENSMUSG00000035069.4_13	chr4	+	1840	8	ISM	ENSMUSG00000035069.4	ENSMUST00000035780.4	1915	9	5209	4	5209	-4	3prime_fragment	FALSE	canonical	3	84	junction_2	12.194009904499	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTCCTTGCCTTAGTTT	5251	False	NA	12	True	AATAAA	-24	NA	103176217	103223636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
ENSMUSG00000035069.4_3	chr4	+	1737	8	NIC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	34	-15	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	32.5739347406756	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCACTGTCATCTGTCCT	76	False	NA	1	True	AATAAA	-13	NA	103171042	103223625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103188501_103188577_103210698_103210849_103223169
ENSMUSG00000035078.7_4	chr14	-	5412	10	FSM	ENSMUSG00000035078.7	ENSMUST00000058679.7	2570	10	43	-2885	43	-941	multi-exon	FALSE	canonical	3	201	junction_4	9.18936583472681	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTCTCATAATCTA	NA	False	NA	-16	True	AATAAA	-14	NA	63781388	63758040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
ENSMUSG00000035078.7_9	chr14	-	4361	12	NNC	ENSMUSG00000035078.7	novel	2570	10	NA	NA	62	-939	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.467814354144	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGTCTCATAATCTACT	NA	False	NA	-14	True	AATAAA	-16	NA	63781369	63758038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_63759071_63760056_63761028_63761075_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
ENSMUSG00000035086.14_1	chr11	-	2012	12	FSM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	35	2318	0	-8	multi-exon	FALSE	canonical	3	365	junction_8	49.9747043451001	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATTACCAAGTGGTACG	NA	False	NA	-10	True	AATAAA	-17	NA	101193077	101179095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUSG00000035086.14_8	chr11	-	2648	11	FSM	ENSMUSG00000035086.14	ENSMUST00000122817.8	2662	11	9	5	0	-5	multi-exon	FALSE	canonical	3	416	junction_7	42.6812605249658	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTACCAAGTGGTACGCCT	NA	False	NA	-7	True	AATAAA	-20	NA	101193077	101179092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUSG00000035093.17_0	chr2	-	6689	18	FSM	ENSMUSG00000035093.17	ENSMUST00000053699.13	6797	18	91	17	91	-17	multi-exon	FALSE	canonical	3	54	junction_6	11.6758408483317	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATACCAAGAGAGAATTT	395	False	NA	NA	False	AATAAA	-19	NA	125624699	125578922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_125582838_125585733_125585954_125587716_125587872_125589304_125589526_125592198_125592362_125593648_125593782_125594733_125594901_125599113_125599256_125599351_125599520_125600085_125600167_125602191_125602327_125609294_125609411_125609728_125609754_125610026_125610254_125613328_125613465_125615095_125615421_125617472_125617652_125624518
ENSMUSG00000035093.17_1	chr2	-	4416	4	ISM	ENSMUSG00000035093.17	ENSMUST00000053699.13	6797	18	35360	17	4754	-17	3prime_fragment	FALSE	canonical	3	64	junction_1	7.76029781788188	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATACCAAGAGAGAATTT	NA	False	NA	NA	False	AATAAA	-19	NA	125589430	125578922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_125582838_125585733_125585954_125587716_125587872_125589304
ENSMUSG00000035093.17_14	chr2	-	6504	17	NIC	ENSMUSG00000035093.17	novel	6797	18	NA	NA	86	-28	combination_of_known_splicesites	FALSE	canonical	3	5	junction_16	17.9041501822901	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACTAATGGATTATACCA	390	False	NA	NA	False	AATAAA	-8	NA	125624704	125578933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_125582838_125585733_125585954_125587716_125587872_125589304_125589526_125592198_125592362_125593648_125593782_125594733_125594901_125599113_125599256_125599351_125599520_125600085_125600167_125602191_125602327_125609294_125609411_125609728_125609754_125610026_125610254_125613328_125613465_125615095_125615421_125624518
ENSMUSG00000035093.17_2	chr2	-	2697	1	ISM	ENSMUSG00000035093.17	ENSMUST00000053699.13	6797	18	43174	14	12568	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACCAAGAGAGAATTTCTG	NA	False	NA	NA	False	AATAAA	-22	NA	125581616	125578919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_125578900_125581600
ENSMUSG00000035095.12_1	chr14	+	3643	2	ISM	ENSMUSG00000035095.12	ENSMUST00000121288.2	4231	4	15718	7	15703	-7	3prime_fragment	FALSE	canonical	2	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGGAGATATCCAAATAG	NA	False	NA	NA	False	AATAAA	-9	NA	63689560	63702940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_63690089_63699825
ENSMUSG00000035095.12_4	chr14	+	4094	4	FSM	ENSMUSG00000035095.12	ENSMUST00000121288.2	4231	4	130	7	115	-7	multi-exon	FALSE	canonical	2	3	junction_1	2.16024689946929	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGGAGATATCCAAATAG	NA	False	NA	NA	False	AATAAA	-9	NA	63673972	63702940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_63674082_63679361_63679463_63689319_63690089_63699825
ENSMUSG00000035104.15_1	chr6	+	1713	3	FSM	ENSMUSG00000035104.15	ENSMUST00000042974.15	1773	3	51	9	-14	-9	multi-exon	FALSE	canonical	3	34	junction_1	1.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCTTCTTTTGCTTCGT	NA	False	NA	NA	False	AATAAA	-10	NA	82018654	82070071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_82018883_82048035_82048224_82068774
ENSMUSG00000035104.15_3	chr6	+	1941	4	NIC	ENSMUSG00000035104.15	novel	1773	3	NA	NA	14	-12	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	16.2138486760204	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAATCTTCTTTTGCTT	NA	False	NA	NA	False	AATAAA	-7	NA	82018617	82070068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_82018883_82021295_82021490_82048035_82048224_82068774
ENSMUSG00000035105.6_0	chr12	-	1956	5	FSM	ENSMUSG00000035105.6	ENSMUST00000039516.4	2662	5	29	677	29	-677	multi-exon	FALSE	canonical	3	55	junction_3	5.24404424085076	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGAGTTCTTCCACATCA	NA	False	NA	NA	False	AATAAA	-15	NA	54250617	54226443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_54227442_54228416_54228491_54230665_54230803_54232326_54232447_54249990
ENSMUSG00000035107.14_0	chr16	+	5838	16	FSM	ENSMUSG00000035107.14	ENSMUST00000046663.8	6561	16	67	656	67	-656	multi-exon	FALSE	canonical	3	119	junction_1	11.4960862905599	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTTTTTGGATTAAATA	NA	False	NA	19	True	AATAAA	-22	NA	58228872	58289434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_58229315_58244923_58245152_58253688_58253827_58265703_58265756_58268814_58268888_58269178_58269313_58270161_58270203_58271086_58271303_58272023_58272149_58275488_58275640_58276439_58276521_58276645_58276772_58281317_58281412_58283421_58283472_58284552_58284691_58285685
ENSMUSG00000035107.14_3	chr16	+	5839	16	NNC	ENSMUSG00000035107.14	novel	6561	16	NA	NA	60	-656	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_11	30.3420500296206	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTTTTTGGATTAAATA	NA	False	NA	19	True	AATAAA	-22	NA	58228865	58289434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_58229315_58244923_58245152_58253688_58253827_58265703_58265756_58268814_58268888_58269178_58269313_58270161_58270203_58271086_58271303_58272023_58272149_58275488_58275640_58276439_58276515_58276645_58276772_58281317_58281412_58283421_58283472_58284552_58284691_58285685
ENSMUSG00000035107.14_49	chr16	+	2436	1	ISM	ENSMUSG00000035107.14	ENSMUST00000046663.8	6561	16	58224	625	6422	-625	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCATAGTCCAGAAAATG	NA	False	NA	5	True	AATAAA	-10	NA	58287029	58289465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_58287000_58289500
ENSMUSG00000035125.11_12	chr6	+	4793	17	NIC	ENSMUSG00000035125.11	novel	3519	18	NA	NA	7	380	intron_retention	FALSE	canonical	3	8	junction_4	15.5149877134982	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTTTCAAAATCTGTACT	NA	False	NA	NA	False	ATTAAA	-26	NA	81900667	81935423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_81900920_81902746_81902876_81907648_81907874_81909794_81909893_81910708_81913003_81916360_81916548_81918298_81918423_81919909_81919992_81920409_81920523_81921387_81921502_81923443_81923595_81925243_81925363_81926889_81926967_81928700_81928768_81930254_81930402_81933811_81933937_81934934
ENSMUSG00000035125.11_13	chr6	+	3244	17	NIC	ENSMUSG00000035125.11	novel	3519	18	NA	NA	-1	-193	combination_of_known_junctions	FALSE	canonical	3	20	junction_9	11.5805602196094	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTGCTGTTAAAGGGCA	NA	False	NA	NA	False	TATAAA	-14	NA	81900659	81936044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_81900920_81902746_81902876_81907648_81907874_81909794_81909893_81912886_81913003_81916360_81916548_81918298_81918423_81919909_81919992_81920409_81920523_81921387_81921502_81923443_81923595_81925243_81925363_81926889_81926967_81928700_81928768_81930254_81930402_81933811_81933937_81934934
ENSMUSG00000035125.11_3	chr6	+	3219	17	FSM	ENSMUSG00000035125.11	ENSMUST00000043195.11	4192	17	6	967	2	-308	multi-exon	FALSE	canonical	3	32	junction_9	9.77161066559654	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCAATGATGATCCTGTA	NA	False	NA	NA	False	NA	NA	NA	81900655	81935929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_81900920_81902746_81902876_81907648_81907874_81909794_81909893_81912886_81913003_81916360_81916548_81918298_81918423_81919909_81919992_81920409_81920523_81921301_81921502_81923443_81923595_81925243_81925363_81926889_81926967_81928700_81928768_81930254_81930402_81933811_81933937_81934934
ENSMUSG00000035125.11_34	chr6	+	1751	9	ISM	ENSMUSG00000035125.11	ENSMUST00000043195.11	4192	17	6	15961	2	230	5prime_fragment	FALSE	canonical	3	41	junction_4	10.4155832769941	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAGTTCACTGACTTAG	NA	False	NA	NA	False	AATAAA	-10	NA	81900655	81920935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_81900920_81902746_81902876_81907648_81907874_81909794_81909893_81912886_81913003_81916360_81916548_81918298_81918423_81919909_81919992_81920409
ENSMUSG00000035133.10_15	chr12	+	6494	7	NNC	ENSMUSG00000035133.10	novel	5197	6	NA	NA	59	3	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_1	94.5879954798118	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCTCCTAAGAGTTTGAT	NA	False	NA	8	True	AGTAAA	-19	NA	52550857	52615621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_52551171_52562861_52566751_52589271_52589420_52604271_52604350_52606750_52606883_52609104_52609211_52613793
ENSMUSG00000035133.10_21	chr12	+	4661	6	FSM	ENSMUSG00000035133.10	ENSMUST00000110725.2	5197	6	1627	-1091	1627	108	multi-exon	FALSE	canonical	3	174	junction_1	60.5276796185018	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGCTACTGTTTAAGT	NA	False	NA	113	True	NA	NA	NA	52564486	52615726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_52566751_52589271_52589420_52604271_52604350_52606750_52606883_52609104_52609211_52613793
ENSMUSG00000035133.10_22	chr12	+	4229	6	NIC	ENSMUSG00000035133.10	novel	5197	6	NA	NA	2331	383	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	112.458703531563	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAGGTTGCTAAAGAATT	NA	False	NA	NA	False	ATTAAA	-23	NA	52565190	52616001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_52566751_52589274_52589420_52604271_52604350_52606750_52606883_52609104_52609211_52613793
ENSMUSG00000035133.10_29	chr12	+	1889	1	ISM	ENSMUSG00000035133.10	ENSMUST00000219443.2	9323	7	63747	2324	51686	816	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCTGTTACACTGACTT	6905	False	NA	6	True	ATTAAA	-15	NA	52614545	52616434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_52614500_52616400
ENSMUSG00000035133.10_4	chr12	+	6589	7	NNC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	-4	374	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_1	83.7842798832547	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTTTCTAGGTTGC	NA	False	NA	NA	False	ATTAAA	-14	NA	52550794	52615992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_52550832_52562861_52566751_52589271_52589420_52604271_52604350_52606750_52606883_52609104_52609211_52613793
ENSMUSG00000035133.10_5	chr12	+	6522	7	NNC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	-14	300	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	115.531741670129	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATAGCTTTAATTTATAG	NA	False	NA	NA	False	NA	NA	NA	52550784	52615918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_52550832_52562861_52566751_52589274_52589420_52604271_52604350_52606750_52606883_52609104_52609211_52613793
ENSMUSG00000035139.15_1	chr13	+	3301	17	FSM	ENSMUSG00000035139.15	ENSMUST00000040117.15	3328	17	24	3	-20	-3	multi-exon	FALSE	canonical	3	118	junction_13	19.2596363867546	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTCAGGCTATTGTGAT	5518	False	NA	5	True	AATAAA	-17	NA	51805756	51838077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
ENSMUSG00000035139.15_9	chr13	+	3182	17	NIC	ENSMUSG00000035139.15	novel	3328	17	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	37.006703362364	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAGGCTATTGTGATCT	5529	False	NA	7	True	AATAAA	-19	NA	51805767	51838079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_51805857_51806642_51806792_51808531_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
ENSMUSG00000035142.19_0	chr12	+	1180	11	FSM	ENSMUSG00000035142.19	ENSMUST00000040090.16	2987	11	19	1788	0	-1788	multi-exon	FALSE	canonical	3	215	junction_4	16.265300489078	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGCTGCTCTATGATGA	NA	False	NA	7	True	AATAAA	-16	NA	52144538	52357739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227874_52227915_52227999_52228091_52317821_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357484
ENSMUSG00000035142.19_3	chr12	+	3762	12	NNC	ENSMUSG00000035142.19	novel	2987	11	NA	NA	0	1062	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	70.6605200299934	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTAAAAGAAATCTGTATA	NA	False	NA	NA	False	NA	NA	NA	52144538	52360589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227874_52227915_52227999_52228091_52317821_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357484_52357820_52358087
ENSMUSG00000035150.16_1	chrX	-	3576	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	62	9	4	-9	multi-exon	TRUE	canonical	3	1008	junction_2	64.9970120101527	2125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGCATTAATTGTGCC	NA	False	NA	-11	True	AATAAA	-12	NA	93256253	93232321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
ENSMUSG00000035150.16_3	chrX	-	1718	1	ISM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	22276	9	22218	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGCATTAATTGTGCC	NA	False	NA	-11	True	AATAAA	-12	NA	93234039	93232321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_93232300_93234000
ENSMUSG00000035150.16_4	chrX	-	3620	12	NIC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	-35	-9	combination_of_known_junctions	FALSE	canonical	3	89	junction_11	299.322651309213	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGCATTAATTGTGCC	NA	False	NA	-11	True	AATAAA	-12	NA	93256503	93232321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256376
ENSMUSG00000035151.13_0	chr8	-	2341	1	ISM	ENSMUSG00000035151.13	ENSMUST00000177594.8	4704	9	17119	395	9259	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGCCTTTCTGTGGATG	2992	False	NA	-2	True	AATAAA	-18	NA	84041996	84039655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_84039700_84042000
ENSMUSG00000035151.13_1	chr8	-	4292	9	FSM	ENSMUSG00000035151.13	ENSMUST00000053902.4	4319	9	22	5	22	-5	multi-exon	FALSE	canonical	3	74	junction_4	7.29297607290741	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGCCTTTCTGTGGATG	8192	False	NA	-2	True	AATAAA	-18	NA	84059093	84039655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84043091_84043429_84043564_84044359_84044429_84046042_84046177_84048061_84048192_84049295_84049394_84055740_84055770_84057739_84057888_84058978
ENSMUSG00000035152.15_1	chr11	+	3332	21	FSM	ENSMUSG00000035152.15	ENSMUST00000065692.14	3269	21	-67	4	4	-4	multi-exon	FALSE	canonical	3	171	junction_14	24.9631728752577	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGAAACATAAACTGCACC	2183	False	NA	NA	False	ATTAAA	-16	NA	83193532	83293834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
ENSMUSG00000035152.15_3	chr11	+	3372	22	FSM	ENSMUSG00000035152.15	ENSMUST00000018875.13	5625	22	226	2027	6	-4	multi-exon	FALSE	canonical	3	76	junction_14	47.3312733095844	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGAAACATAAACTGCACC	2185	False	NA	NA	False	ATTAAA	-16	NA	83193534	83293834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83255620_83255663_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
ENSMUSG00000035152.15_35	chr11	+	1103	1	ISM	ENSMUSG00000035152.15	ENSMUST00000018875.13	5625	22	101446	4	95691	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAAGTTTGTGGTATG	1298	False	NA	NA	False	AATAAA	-12	NA	83294754	83295857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83294800_83295900
ENSMUSG00000035158.16_1	chr6	+	4897	10	FSM	ENSMUSG00000035158.16	ENSMUST00000043637.14	4881	10	-17	1	-11	-1	multi-exon	FALSE	canonical	3	14	junction_1	22.5738841787048	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTTGACCAGTTGT	NA	False	NA	4	True	ATTAAA	-15	NA	97784001	97998309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_97784249_97918013_97918264_97970087_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97983083_97983159_97987355_97987432_97990629_97990778_97994734
ENSMUSG00000035158.16_11	chr6	+	4565	9	NNC	ENSMUSG00000035158.16	novel	2113	10	NA	NA	16103	-1	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_5	19.3612854686872	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTTGACCAGTTGT	4138	False	NA	4	True	ATTAAA	-15	NA	97933981	97998309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_97934147_97970087_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97983083_97983159_97987355_97987432_97990629_97990778_97994734
ENSMUSG00000035158.16_12	chr6	+	4545	9	NNC	ENSMUSG00000035158.16	novel	2113	10	NA	NA	16105	-1	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_5	18.3059928711884	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTTGACCAGTTGT	4140	False	NA	4	True	ATTAAA	-15	NA	97933983	97998309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_97934147_97970087_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97983101_97983159_97987355_97987432_97990629_97990778_97994734
ENSMUSG00000035158.16_2	chr6	+	4891	10	FSM	ENSMUSG00000035158.16	ENSMUST00000203884.3	2113	10	-24	-2754	-24	-2	multi-exon	FALSE	canonical	3	14	junction_1	21.9516865686871	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATTGTGTTGACCAGTTG	NA	False	NA	3	True	ATTAAA	-14	NA	97783988	97998308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_97784249_97918013_97918264_97970087_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97983101_97983159_97987355_97987432_97990629_97990778_97994734
ENSMUSG00000035158.16_26	chr6	+	2152	1	ISM	ENSMUSG00000035158.16	ENSMUST00000043637.14	4881	10	212139	1	27276	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTTGACCAGTTGT	1768	False	NA	4	True	ATTAAA	-15	NA	97996157	97998309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_97996200_97998300
ENSMUSG00000035158.16_34	chr6	+	4361	8	ISM	ENSMUSG00000035158.16	ENSMUST00000043628.13	1921	9	1374	-2641	1245	-1	3prime_fragment	FALSE	canonical	3	20	junction_4	20.1099021197346	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTTGACCAGTTGT	NA	False	NA	4	True	ATTAAA	-15	NA	97970126	97998309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97983083_97983159_97987355_97987432_97990629_97990778_97994734
ENSMUSG00000035158.16_35	chr6	+	4153	7	ISM	ENSMUSG00000035158.16	ENSMUST00000203938.2	1074	9	2460	-3172	2460	-2	3prime_fragment	FALSE	canonical	3	26	junction_3	17.0562793910825	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATTGTGTTGACCAGTTG	98	False	NA	3	True	ATTAAA	-14	NA	97971341	97998308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_97971426_97973334_97973431_97980847_97980966_97983101_97983159_97987355_97987432_97990629_97990778_97994734
ENSMUSG00000035161.8_10	chr14	-	3704	18	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	1	-7207	intron_retention	FALSE	canonical	3	358	junction_3	52.091548371734	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTTGTGTGGTTTAGGA	NA	False	NA	-8	True	AATAAA	-11	NA	62998586	62930459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938079_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951292_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
ENSMUSG00000035161.8_14	chr14	-	3702	18	FSM	ENSMUSG00000035161.8	ENSMUST00000223585.2	10883	18	-25	7206	1	-7206	multi-exon	FALSE	canonical	3	25	junction_12	114.295797874483	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTGTGTGGTTTAGGAA	NA	False	NA	-7	True	AATAAA	-12	NA	62998586	62930458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_62931124_62933147_62933242_62934041_62934405_62938079_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951289_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
ENSMUSG00000035161.8_9	chr14	-	3675	18	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	1	-7206	intron_retention	FALSE	canonical	3	165	junction_3	83.8071604244429	290	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTGTGTGGTTTAGGAA	NA	False	NA	-7	True	AATAAA	-12	NA	62998586	62930458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938109_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951292_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
ENSMUSG00000035164.9_2	chr9	-	6280	6	FSM	ENSMUSG00000035164.9	ENSMUST00000213645.2	6764	6	-166	650	-166	-9	multi-exon	TRUE	canonical	2	2	junction_5	3.87814388593306	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAATATACTTTATGTT	NA	False	NA	NA	False	AATATA	-6	NA	52080038	52023293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_52028103_52028838_52028946_52031456_52031692_52037862_52038003_52054974_52055727_52079801
ENSMUSG00000035164.9_3	chr9	-	4512	6	NNC	ENSMUSG00000035164.9	novel	6764	6	NA	NA	-325	-1634	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	2.0976176963403	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATGTCCAAGCATCT	NA	False	NA	NA	False	AATAAA	-17	NA	52080197	52024918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_52028103_52028838_52028946_52031456_52031692_52037862_52038003_52054974_52055727_52080103
ENSMUSG00000035168.17_1	chr2	+	7413	27	FSM	ENSMUSG00000035168.17	ENSMUST00000112568.8	7422	27	7	2	5	0	multi-exon	FALSE	canonical	3	118	junction_5	18.3464360565297	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGGTTGGCATTCATTG	NA	False	NA	11	True	AATAAA	-13	NA	59442392	59676059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_59442541_59477112_59477217_59529691_59529772_59555004_59555194_59588808_59588914_59601475_59601607_59602696_59602884_59615667_59615932_59621119_59621222_59621942_59622225_59623439_59623592_59626138_59626371_59627929_59628097_59629914_59630523_59636619_59636729_59637910_59638034_59645661_59645899_59647828_59648015_59650550_59650630_59663479_59663614_59664924_59665049_59665735_59665912_59667429_59667563_59669318_59669411_59671282_59671430_59672353_59672455_59673038
ENSMUSG00000035168.17_3	chr2	+	7435	27	FSM	ENSMUSG00000035168.17	ENSMUST00000037526.11	7873	27	-1	439	1	-5	multi-exon	TRUE	canonical	3	10	junction_9	32.9830734785992	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCAAGTGGGTTGGCATT	NA	False	NA	6	True	AATAAA	-8	NA	59442386	59676054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_59442541_59477112_59477217_59529691_59529772_59555004_59555194_59588808_59588914_59601475_59601607_59602696_59602884_59615667_59615932_59621119_59621243_59621942_59622225_59623439_59623592_59626138_59626371_59627929_59628097_59629914_59630523_59636619_59636729_59637910_59638034_59645661_59645899_59647828_59648015_59650550_59650630_59663479_59663614_59664924_59665049_59665735_59665912_59667429_59667563_59669318_59669411_59671282_59671430_59672353_59672455_59673038
ENSMUSG00000035168.17_46	chr2	+	4814	14	ISM	ENSMUSG00000035168.17	ENSMUST00000139863.3	7246	26	153216	2	-6041	0	3prime_fragment	FALSE	canonical	3	128	junction_7	15.3853845961548	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGGTTGGCATTCATTG	300	False	NA	11	True	AATAAA	-13	NA	59630370	59676059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_59630523_59636619_59636729_59637910_59638034_59645661_59645899_59647828_59648015_59650550_59650630_59663479_59663614_59664924_59665049_59665735_59665912_59667429_59667563_59669318_59669411_59671282_59671430_59672353_59672455_59673038
ENSMUSG00000035168.17_57	chr2	+	2333	1	ISM	ENSMUSG00000035168.17	ENSMUST00000112568.8	7422	27	231341	2	1643	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGGTTGGCATTCATTG	NA	False	NA	11	True	AATAAA	-13	NA	59673726	59676059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_59673700_59676100
ENSMUSG00000035168.17_6	chr2	+	7315	26	NIC	ENSMUSG00000035168.17	novel	7422	27	NA	NA	-1	-2	combination_of_known_splicesites	TRUE	canonical	3	14	junction_1	32.7975608849195	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGGTTGGCATTCAT	NA	False	NA	9	True	AATAAA	-11	NA	59442384	59676057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_59442541_59529691_59529772_59555004_59555194_59588808_59588914_59601475_59601607_59602696_59602884_59615667_59615932_59621119_59621222_59621942_59622225_59623439_59623592_59626138_59626371_59627929_59628097_59629914_59630523_59636619_59636729_59637910_59638034_59645661_59645899_59647828_59648015_59650550_59650630_59663479_59663614_59664924_59665049_59665735_59665912_59667429_59667563_59669318_59669411_59671282_59671430_59672353_59672455_59673038
ENSMUSG00000035171.10_1	chr19	-	1848	3	FSM	ENSMUSG00000035171.10	ENSMUST00000179768.8	962	3	126	-1012	2	-1	multi-exon	FALSE	canonical	3	207	junction_2	1.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGTGTGTCTTGTTGTTG	638	False	NA	NA	False	AATAAA	-20	NA	21630155	21574676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_21576233_21596472_21596580_21629970
ENSMUSG00000035171.10_2	chr19	-	1456	3	FSM	ENSMUSG00000035171.10	ENSMUST00000179553.2	942	3	-126	-388	-9	-1	multi-exon	FALSE	canonical	3	15	junction_2	89.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGTGTGTCTTGTTGTTG	503	False	NA	NA	False	AATAAA	-20	NA	21630290	21574676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_21575699_21576118_21576233_21629970
ENSMUSG00000035171.10_3	chr19	-	1565	4	FSM	ENSMUSG00000035171.10	ENSMUST00000038830.10	1614	4	47	2	-12	-2	multi-exon	FALSE	canonical	3	194	junction_1	6.94422221866655	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTGTGTGTCTTGTTGTT	500	False	NA	NA	False	AATAAA	-19	NA	21630293	21574677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_21575699_21576118_21576233_21596472_21596580_21629970
ENSMUSG00000035171.10_5	chr19	-	1323	4	NNC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	-138241	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	88.3377357393518	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGTGTGTCTTGTTGTTG	NA	False	NA	NA	False	AATAAA	-20	NA	21768581	21574676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_21575699_21576118_21576233_21581652_21581683_21768424
ENSMUSG00000035171.10_6	chr19	-	300	1	ISM	ENSMUSG00000035171.10	ENSMUST00000038830.10	1614	4	55364	1	6707	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGTGTGTCTTGTTGTTG	NA	False	NA	NA	False	AATAAA	-20	NA	21574976	21574676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_21574700_21575000
ENSMUSG00000035171.10_7	chr19	-	1746	2	FSM	ENSMUSG00000035171.10	ENSMUST00000178523.2	629	2	121	-1238	-3	-1	multi-exon	FALSE	canonical	3	15	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGTGTGTCTTGTTGTTG	633	False	NA	NA	False	AATAAA	-20	NA	21630160	21574676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_21576233_21629970
ENSMUSG00000035172.16_1	chr11	-	3007	13	FSM	ENSMUSG00000035172.16	ENSMUST00000164474.8	3010	13	-1	4	-1	-4	multi-exon	FALSE	canonical	3	27	junction_4	14.3843568581366	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAAAGCCTTCCTGTGGG	724	False	NA	-4	True	AAGAAA	-15	NA	101062144	101053511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101053891_101054331_101054524_101054838_101055298_101055484_101055618_101055885_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
ENSMUSG00000035172.16_2	chr11	-	3017	13	FSM	ENSMUSG00000035172.16	ENSMUST00000043397.14	3056	13	32	7	-2	-4	multi-exon	FALSE	canonical	3	20	junction_4	15.6142740963375	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAAAGCCTTCCTGTGGG	723	False	NA	-4	True	AAGAAA	-15	NA	101062145	101053511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101053891_101054331_101054524_101054838_101055298_101055484_101055618_101055876_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
ENSMUSG00000035172.16_3	chr11	-	2993	13	NIC	ENSMUSG00000035172.16	novel	3010	13	NA	NA	-12	-4	combination_of_known_junctions	FALSE	canonical	3	7	junction_2	19.5867018379534	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAAAGCCTTCCTGTGGG	713	False	NA	-4	True	AAGAAA	-15	NA	101062155	101053511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_101053891_101054331_101054524_101054863_101055298_101055484_101055618_101055885_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
ENSMUSG00000035172.16_4	chr11	-	2992	13	FSM	ENSMUSG00000035172.16	ENSMUST00000129895.8	2635	13	-364	7	-2	-4	multi-exon	FALSE	canonical	3	7	junction_2	20.3856907876306	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAAAGCCTTCCTGTGGG	723	False	NA	-4	True	AAGAAA	-15	NA	101062145	101053511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101053891_101054331_101054524_101054863_101055298_101055484_101055618_101055876_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
ENSMUSG00000035173.15_0	chr19	-	2592	1	ISM	ENSMUSG00000035173.15	ENSMUST00000118592.8	6445	16	32113	5	5078	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAGTTGTCTGTTGATGG	NA	False	NA	-6	True	ATTAAA	-17	NA	56778509	56775917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_56775900_56778500
ENSMUSG00000035173.15_1	chr19	-	6443	16	FSM	ENSMUSG00000035173.15	ENSMUST00000118592.8	6445	16	-3	5	-3	-5	multi-exon	FALSE	canonical	3	40	junction_2	9.58239125804317	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAGTTGTCTGTTGATGG	5194	False	NA	-6	True	ATTAAA	-17	NA	56810625	56775917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_56779479_56780372_56780593_56781727_56781939_56783521_56783603_56785875_56786066_56786998_56787255_56788495_56788639_56789344_56789432_56789598_56789698_56790316_56790422_56795397_56795518_56796409_56796623_56797624_56797754_56798670_56798798_56801426_56802122_56810419
ENSMUSG00000035173.15_11	chr19	-	6721	14	NIC	ENSMUSG00000035173.15	novel	6445	16	NA	NA	-7	1290	intron_retention	FALSE	canonical	3	43	junction_2	9.1554620422511	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAACTCTGCATTATTT	5190	False	NA	NA	False	AATAAA	-18	NA	56810629	56777672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_56781939_56783521_56783603_56785875_56786066_56786998_56787255_56788495_56788639_56789344_56789432_56789598_56789698_56790316_56790422_56795397_56795518_56796409_56796623_56797624_56797754_56798670_56798798_56801426_56802122_56810419
ENSMUSG00000035173.15_14	chr19	-	6354	16	NIC	ENSMUSG00000035173.15	novel	6445	16	NA	NA	3	-5	intron_retention	FALSE	canonical	2	3	junction_11	16.2693986776812	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAGTTGTCTGTTGATGG	5200	False	NA	-6	True	ATTAAA	-17	NA	56810619	56775917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_56779479_56780372_56780593_56781727_56781939_56783521_56783603_56785875_56786066_56786998_56787255_56788495_56788639_56789344_56789432_56789598_56789698_56790316_56790422_56795397_56795518_56796492_56796623_56797624_56797754_56798670_56798798_56801426_56802122_56810419
ENSMUSG00000035173.15_5	chr19	-	5715	15	FSM	ENSMUSG00000035173.15	ENSMUST00000076085.4	2754	15	516	-3477	516	-5	multi-exon	TRUE	canonical	3	40	junction_2	9.89124535606501	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAGTTGTCTGTTGATGG	NA	False	NA	-6	True	ATTAAA	-17	NA	56801599	56775917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_56779479_56780372_56780593_56781727_56781939_56783521_56783603_56785875_56786066_56786998_56787255_56788495_56788639_56789344_56789432_56789598_56789698_56790316_56790422_56795397_56795518_56796409_56796623_56797624_56797754_56798670_56798798_56801426
ENSMUSG00000035173.15_6	chr19	-	6227	15	NIC	ENSMUSG00000035173.15	novel	6445	16	NA	NA	-7	-5	intron_retention	FALSE	canonical	0	0	junction_1	17.1608536489064	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAGTTGTCTGTTGATGG	5190	False	NA	-6	True	ATTAAA	-17	NA	56810629	56775917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_56779479_56781727_56781939_56783521_56783603_56785875_56786066_56786998_56787255_56788495_56788639_56789344_56789432_56789598_56789698_56790316_56790422_56795397_56795518_56796409_56796623_56797624_56797754_56798670_56798798_56801426_56802122_56810419
ENSMUSG00000035181.7_10	chr12	-	3449	10	ISM	ENSMUSG00000035181.7	ENSMUST00000220369.2	4981	25	45592	-1097	-5368	-2	3prime_fragment	FALSE	canonical	3	57	junction_1	5.03322295684717	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	NA	False	NA	-2	True	AATAAA	-14	NA	51941141	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004_51938251_51940432_51940656_51941045
ENSMUSG00000035181.7_15	chr12	-	2555	5	ISM	ENSMUSG00000035181.7	ENSMUST00000220369.2	4981	25	51733	-1097	773	-2	3prime_fragment	FALSE	canonical	3	57	junction_1	5.35607132140714	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	4934	False	NA	-2	True	AATAAA	-14	NA	51935000	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780
ENSMUSG00000035181.7_17	chr12	-	1252	1	ISM	ENSMUSG00000035181.7	ENSMUST00000040583.7	7763	36	94197	2	11866	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	1526	False	NA	-2	True	AATAAA	-14	NA	51923907	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51922700_51923900
ENSMUSG00000035181.7_2	chr12	-	7754	36	FSM	ENSMUSG00000035181.7	ENSMUST00000040583.7	7763	36	7	2	7	-2	multi-exon	FALSE	canonical	1	15	junction_35	10.655036176305	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	NA	False	NA	-2	True	AATAAA	-14	NA	52018097	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004_51938251_51940432_51940656_51941045_51941226_51943345_51943415_51944529_51944712_51945837_51946075_51952103_51952284_51956740_51956877_51961756_51961927_51962849_51963040_51965366_51965524_51967172_51967361_51968120_51968227_51971780_51971957_51972036_51972201_51976973_51977084_51984853_51984954_51986353_51986507_51992203_51992316_51994537_51994789_51996714_51996871_51997711_51997968_51999269_51999428_52002162_52002338_52002903_52003054_52003861_52003971_52005635_52005848_52008215_52008428_52017985
ENSMUSG00000035181.7_21	chr12	-	7500	35	NIC	ENSMUSG00000035181.7	novel	7763	36	NA	NA	25	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_33	14.1477925699409	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	NA	False	NA	-2	True	AATAAA	-14	NA	52018055	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004_51938251_51940432_51940656_51941045_51941226_51943345_51943415_51944529_51944712_51945837_51946075_51952103_51952284_51956740_51956877_51961756_51961927_51962849_51963040_51965366_51965524_51967172_51967361_51968120_51968227_51971780_51971957_51972036_51972201_51976973_51977084_51984853_51984954_51986353_51986507_51992203_51992316_51994537_51994789_51996714_51996871_51997711_51997968_51999269_51999428_52002162_52002338_52002903_52003054_52003861_52003971_52008215_52008428_52017985
ENSMUSG00000035181.7_27	chr12	-	6253	28	ISM	ENSMUSG00000035181.7	ENSMUST00000040583.7	7763	36	21351	2	-2666	-2	3prime_fragment	FALSE	canonical	3	40	junction_23	7.49814791946799	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	9748	False	NA	-2	True	AATAAA	-14	NA	51996753	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004_51938251_51940432_51940656_51941045_51941226_51943345_51943415_51944529_51944712_51945837_51946075_51952103_51952284_51956740_51956877_51961756_51961927_51962849_51963040_51965366_51965524_51967172_51967361_51968120_51968227_51971780_51971957_51972036_51972201_51976973_51977084_51984853_51984954_51986353_51986507_51992203_51992316_51994537_51994789_51996714
ENSMUSG00000035181.7_3	chr12	-	3275	9	ISM	ENSMUSG00000035181.7	ENSMUST00000220369.2	4981	25	46156	-1097	-4804	-2	3prime_fragment	FALSE	canonical	3	57	junction_1	4.78114787472632	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	NA	False	NA	-2	True	AATAAA	-14	NA	51940577	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004_51938251_51940432
ENSMUSG00000035181.7_51	chr12	-	2825	7	ISM	ENSMUSG00000035181.7	ENSMUST00000220369.2	4981	25	50295	-1097	-665	-2	3prime_fragment	FALSE	canonical	3	57	junction_1	4.63381292481928	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	3496	False	NA	-2	True	AATAAA	-14	NA	51936438	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369
ENSMUSG00000035181.7_52	chr12	-	3665	12	ISM	ENSMUSG00000035181.7	ENSMUST00000220369.2	4981	25	42141	-1097	-8819	-2	3prime_fragment	FALSE	canonical	3	57	junction_1	4.80185914408882	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	NA	False	NA	-2	True	AATAAA	-14	NA	51944592	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004_51938251_51940432_51940656_51941045_51941226_51943345_51943415_51944529
ENSMUSG00000035181.7_6	chr12	-	5123	20	ISM	ENSMUSG00000035181.7	ENSMUST00000220369.2	4981	25	18532	-1097	1483	-2	3prime_fragment	FALSE	canonical	3	52	junction_16	5.4406900328213	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	3106	False	NA	-2	True	AATAAA	-14	NA	51968201	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004_51938251_51940432_51940656_51941045_51941226_51943345_51943415_51944529_51944712_51945837_51946075_51952103_51952284_51956740_51956877_51961756_51961927_51962849_51963040_51965366_51965524_51967172_51967361_51968120
ENSMUSG00000035181.7_8	chr12	-	2943	8	ISM	ENSMUSG00000035181.7	ENSMUST00000220369.2	4981	25	48670	-1097	-2290	-2	3prime_fragment	FALSE	canonical	3	57	junction_1	5.09100848034442	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	1871	False	NA	-2	True	AATAAA	-14	NA	51938063	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004
ENSMUSG00000035181.7_9	chr12	-	5354	22	ISM	ENSMUSG00000035181.7	ENSMUST00000220369.2	4981	25	14667	-1097	154	-2	3prime_fragment	FALSE	canonical	3	50	junction_20	5.7431809116662	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTGTATTTTGAAG	NA	False	NA	-2	True	AATAAA	-14	NA	51972066	51922655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004_51938251_51940432_51940656_51941045_51941226_51943345_51943415_51944529_51944712_51945837_51946075_51952103_51952284_51956740_51956877_51961756_51961927_51962849_51963040_51965366_51965524_51967172_51967361_51968120_51968227_51971780_51971957_51972036
ENSMUSG00000035183.15_0	chr2	+	1661	9	FSM	ENSMUSG00000035183.15	ENSMUST00000070353.4	1954	9	3	290	3	-290	multi-exon	TRUE	canonical	2	7	junction_6	24.0624188310319	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTCTAACACTTAATTAC	NA	False	NA	4	True	AATAAA	-17	NA	124910046	124930307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124927576_124927784_124929339_124929442_124929883
ENSMUSG00000035183.15_1	chr2	+	1435	8	NIC	ENSMUSG00000035183.15	novel	1954	9	NA	NA	29	-283	combination_of_known_splicesites	FALSE	canonical	3	4	junction_6	24.7608974154074	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTTAATTACTATTCTT	NA	False	NA	11	True	AATAAA	-24	NA	124910072	124930314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124929339_124929442_124929883
ENSMUSG00000035183.15_5	chr2	+	1485	6	ISM	ENSMUSG00000035183.15	ENSMUST00000070353.4	1954	9	34	4775	34	676	5prime_fragment	FALSE	canonical	3	24	junction_1	1.46969384566991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAGAAAGGAGCATTTGA	NA	False	NA	NA	False	AATAAA	-30	NA	124910077	124925822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950
ENSMUSG00000035183.15_8	chr2	+	1329	7	NIC	ENSMUSG00000035183.15	novel	1954	9	NA	NA	-522	-290	combination_of_known_splicesites	FALSE	canonical	3	4	junction_5	26.4764045897475	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTCTAACACTTAATTAC	NA	False	NA	4	True	AATAAA	-17	NA	124910641	124930307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124929339_124929442_124929883
ENSMUSG00000035198.10_0	chr11	+	1602	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	193	7	193	-7	multi-exon	TRUE	canonical	3	373	junction_8	104.461715475096	699	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAAGCCACCCCCCGGT	1423	False	NA	9	True	AATAAA	-12	NA	101010956	101017238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
ENSMUSG00000035199.7_0	chr6	+	1326	3	FSM	ENSMUSG00000035199.7	ENSMUST00000044681.7	1442	3	108	8	108	-8	multi-exon	FALSE	canonical	3	281	junction_2	50	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGAGTTCTGTCTATA	8556	False	NA	2	True	AATAAA	-13	NA	97187757	97210268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_97187958_97206497_97206716_97209360
ENSMUSG00000035200.8_0	chr9	-	3438	6	FSM	ENSMUSG00000035200.8	ENSMUST00000034854.8	3723	6	269	16	269	-16	multi-exon	FALSE	canonical	0	0	junction_4	1.01980390271856	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTTTAAAGTTTAACATT	NA	False	NA	NA	False	AATAAA	-6	NA	54955794	54935453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_54937530_54941925_54942917_54943675_54943786_54943870_54943916_54951060_54951210_54955727
ENSMUSG00000035201.16_0	chr4	-	1895	4	NNC	ENSMUSG00000035201.16	novel	1976	4	NA	NA	-29769	3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	1.69967317119759	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCTACTCTTTACTTCT	NA	False	NA	NA	False	ATTAAA	-16	NA	101730989	101692162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_101693139_101694021_101694595_101695022_101695337_101730957
ENSMUSG00000035202.9_0	chr9	+	3019	21	FSM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	13	862	-7	-97	multi-exon	FALSE	canonical	3	23	junction_18	9.12359578236564	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCGAGCTCAGGGAGGAC	NA	False	NA	NA	False	NA	NA	NA	123196004	123290867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015_123224077_123238678_123238769_123240937_123241082_123247243_123247352_123247699_123247860_123256511_123256617_123260950_123261067_123265181_123265466_123267199_123267299_123270528_123270667_123281809_123281911_123282275_123282459_123283774_123283945_123284024_123284103_123284957_123285070_123288556_123288685_123290563
ENSMUSG00000035202.9_14	chr9	+	471	1	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	95261	6	7398	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATAATTTCTACCCAGT	NA	False	NA	3	True	AATAAA	-8	NA	123291252	123291723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_123291300_123291700
ENSMUSG00000035202.9_21	chr9	+	2214	15	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	44962	862	-6246	-97	3prime_fragment	FALSE	canonical	3	23	junction_12	8.62039584298748	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCGAGCTCAGGGAGGAC	NA	False	NA	NA	False	NA	NA	NA	123240953	123290867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_123241082_123247243_123247352_123247699_123247860_123256511_123256617_123260950_123261067_123265181_123265466_123267199_123267299_123270528_123270667_123281809_123281911_123282275_123282459_123283774_123283945_123284024_123284103_123284957_123285070_123288556_123288685_123290563
ENSMUSG00000035202.9_6	chr9	+	996	5	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	13	67356	-7	-10	5prime_fragment	FALSE	canonical	3	41	junction_4	7.58287544405155	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATATTAACCTGCTGGTC	NA	False	NA	NA	False	AATAAA	-13	NA	123196004	123224373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015
ENSMUSG00000035202.9_8	chr9	+	2058	14	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	20	20941	0	-19870	5prime_fragment	FALSE	canonical	3	28	junction_9	7.36776924642996	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGCCATTGTAGGTCTTT	NA	False	NA	NA	False	AATAAA	-23	NA	123196011	123270788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015_123224077_123238678_123238769_123240937_123241082_123247243_123247352_123247699_123247860_123256511_123256617_123260950_123261067_123265181_123265466_123267199_123267299_123270528
ENSMUSG00000035203.17_0	chr7	+	2559	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	31.3495356971958	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTGTGGCTCCCTTAAA	1314	False	NA	18	True	AATAAA	-12	NA	5083239	5101174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_5083477_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
ENSMUSG00000035203.17_1	chr7	+	2489	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	43.5085248605051	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTGTGGCTCCCTTAAA	1314	False	NA	18	True	AATAAA	-12	NA	5083239	5101174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_5083477_5085016_5085121_5086728_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ENSMUSG00000035203.17_11	chr7	+	2492	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	43.1135345280822	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTGTGGCTCCCTTAAA	1314	False	NA	18	True	AATAAA	-12	NA	5083239	5101174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_5083477_5085016_5085121_5086728_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
ENSMUSG00000035203.17_17	chr7	+	2645	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	53.7554917432813	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCCCTTAAATTC	1322	False	NA	21	True	AATAAA	-15	NA	5083247	5101177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_5083638_5085016_5085121_5086728_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ENSMUSG00000035203.17_2	chr7	+	2559	12	FSM	ENSMUSG00000035203.17	ENSMUST00000098845.10	2565	12	3	3	-2	-1	multi-exon	FALSE	canonical	3	82	junction_1	31.9772646507711	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTGTGGCTCCCTTAAA	1311	False	NA	18	True	AATAAA	-12	NA	5083236	5101174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_5083477_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ENSMUSG00000035203.17_3	chr7	+	2734	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	-8	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	45.4569090294577	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTGTGGCTCCCTTAAA	1300	False	NA	18	True	AATAAA	-12	NA	5083225	5101174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_5083638_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
ENSMUSG00000035203.17_32	chr7	+	674	2	ISM	ENSMUSG00000035203.17	ENSMUST00000208634.2	2127	10	13587	1	7504	-1	3prime_fragment	FALSE	canonical	3	131	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTGTGGCTCCCTTAAA	2751	False	NA	18	True	AATAAA	-12	NA	5100340	5101174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_5100411_5100570
ENSMUSG00000035203.17_5	chr7	+	2444	11	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	9	-1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	44.445584707595	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTGTGGCTCCCTTAAA	1322	False	NA	18	True	AATAAA	-12	NA	5083247	5101174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_5083477_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ENSMUSG00000035203.17_6	chr7	+	2731	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	-8	-1	combination_of_known_junctions	TRUE	canonical	3	9	junction_1	45.8262979824561	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTGTGGCTCCCTTAAA	1300	False	NA	18	True	AATAAA	-12	NA	5083225	5101174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_5083638_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ENSMUSG00000035203.17_7	chr7	+	2385	11	FSM	ENSMUSG00000035203.17	ENSMUST00000045277.7	2334	11	-52	1	1	-1	multi-exon	FALSE	canonical	3	8	junction_1	46.9447547655753	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTGTGGCTCCCTTAAA	1314	False	NA	18	True	AATAAA	-12	NA	5083239	5101174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_5083477_5086728_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
ENSMUSG00000035203.17_8	chr7	+	2463	11	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	-2	-1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	43.976812071818	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTGTGGCTCCCTTAAA	1306	False	NA	18	True	AATAAA	-12	NA	5083231	5101174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_5083477_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
ENSMUSG00000035206.11_22	chr10	+	1112	1	ISM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	12319	3	4113	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGGCCTCCTGTCCTGT	722	False	NA	8	True	ATTAAA	-16	NA	80703427	80704539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80703400_80704500
ENSMUSG00000035206.11_3	chr10	+	3566	14	ISM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	39	3	-18	1	intron_retention	FALSE	canonical	3	19	junction_5	6.4925993372336	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGGCCTCCTGTCCTGT	NA	False	NA	8	True	ATTAAA	-16	NA	80691147	80704539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333
ENSMUSG00000035206.11_4	chr10	+	2827	15	FSM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	39	3	-18	1	multi-exon	FALSE	canonical	3	19	junction_5	7.35298079221021	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGGCCTCCTGTCCTGT	NA	False	NA	8	True	ATTAAA	-16	NA	80691147	80704539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333_80702495_80703233
ENSMUSG00000035206.11_6	chr10	+	2830	15	NIC	ENSMUSG00000035206.11	novel	2869	15	NA	NA	-18	1	combination_of_known_junctions	FALSE	canonical	2	7	junction_5	9.35387074740632	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGGCCTCCTGTCCTGT	NA	False	NA	8	True	ATTAAA	-16	NA	80691147	80704539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699010_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333_80702495_80703233
ENSMUSG00000035206.11_9	chr10	+	3566	14	NIC	ENSMUSG00000035206.11	novel	2869	15	NA	NA	-19	-3	intron_retention	FALSE	canonical	2	7	junction_5	8.94824038105592	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACAGTGGCCTCCTGTC	NA	False	NA	4	True	ATTAAA	-12	NA	80691146	80704535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699010_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333
ENSMUSG00000035208.17_4	chr11	-	3988	4	NIC	ENSMUSG00000035208.17	novel	2128	5	NA	NA	7	-29	intron_retention	FALSE	canonical	1	1	junction_2	6.79869268479038	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCACATACATGAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	82910927	82893012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_82895607_82904190_82904326_82907478_82908549_82910738
ENSMUSG00000035208.17_6	chr11	-	3096	4	ISM	ENSMUSG00000035208.17	ENSMUST00000038141.15	4011	6	3684	-31	54	31	3prime_fragment	FALSE	canonical	0	0	junction_1	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGGGTGGGTAGGGGAG	2841	False	NA	NA	False	NA	NA	NA	82907952	82892952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_82894716_82894882_82895607_82904190_82904326_82907478
ENSMUSG00000035211.10_0	chr7	+	2730	19	FSM	ENSMUSG00000035211.10	ENSMUST00000036155.10	2731	19	-6	7	-6	-6	multi-exon	FALSE	canonical	0	0	junction_2	1.08297714942322	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCAATACAATGTGTGCC	NA	False	NA	NA	False	AATAAA	-10	NA	99508316	99567022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_99508438_99511496_99511565_99516553_99516652_99520488_99520665_99524361_99524434_99525424_99525498_99528576_99528675_99535209_99535344_99546697_99546827_99547588_99547795_99551912_99551954_99555657_99555784_99560174_99560269_99561003_99561120_99563373_99563698_99565116_99565313_99565904_99566021_99566188_99566295_99566586
ENSMUSG00000035212.15_16	chr4	+	1123	1	ISM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	10518	6	10443	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAGGAGAGTTGCATTT	7318	False	NA	2	True	AATAAA	-14	NA	101515432	101516555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_101515400_101516600
ENSMUSG00000035212.15_2	chr4	+	1858	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	36	4	36	-4	multi-exon	FALSE	canonical	3	539	junction_3	48.8011839564939	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGAGAGTTGCATTTCA	8251	False	NA	4	True	AATAAA	-16	NA	101504950	101516557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
ENSMUSG00000035215.10_0	chr10	-	456	4	FSM	ENSMUSG00000035215.10	ENSMUST00000035775.9	468	4	6	6	6	2	multi-exon	FALSE	canonical	3	2872	junction_3	751.769616009822	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCCTTCCTGCTCTGT	NA	False	NA	-19	True	AATAAA	-19	NA	80691037	80688664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80691014
ENSMUSG00000035215.10_1	chr10	-	915	3	FSM	ENSMUSG00000035215.10	ENSMUST00000217781.2	646	3	-170	-99	0	-1	multi-exon	FALSE	canonical	3	4365	junction_1	93.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCCCTCCCTTCCTGCTC	NA	False	NA	-22	True	AATAAA	-16	NA	80691027	80688667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80688935_80689591_80689664_80690451
ENSMUSG00000035215.10_3	chr10	-	458	4	NIC	ENSMUSG00000035215.10	novel	468	4	NA	NA	7	2	combination_of_known_splicesites	FALSE	canonical	3	184	junction_3	2016.46428736594	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCCTTCCTGCTCTGT	NA	False	NA	-19	True	AATAAA	-19	NA	80691036	80688664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80688935_80689591_80689664_80690451_80690546_80691014
ENSMUSG00000035215.10_5	chr10	-	1576	2	FSM	ENSMUSG00000035215.10	ENSMUST00000218931.2	785	2	-3	-788	-3	0	multi-exon	FALSE	canonical	3	4552	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTCCCTTCCTGCTCT	NA	False	NA	-21	True	AATAAA	-17	NA	80691030	80688666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80689664_80690451
ENSMUSG00000035226.6_0	chr2	-	2160	6	FSM	ENSMUSG00000035226.6	ENSMUST00000044734.3	4962	6	-305	3107	-305	-3107	multi-exon	TRUE	canonical	0	0	junction_1	1.26491106406735	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCCAGCCTCATCACCT	NA	False	NA	NA	False	AATAAA	-26	NA	163760908	163704777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_163706042_163706785_163706926_163707372_163707475_163707711_163707825_163721013_163721153_163760506
ENSMUSG00000035227.8_3	chr7	-	1478	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	88	1343	10	-8	multi-exon	FALSE	canonical	2	1599	junction_2	370.901856964885	1254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAAAATGTGGAGTCTT	NA	False	NA	-11	True	AATAAA	-10	NA	99508096	99488118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
ENSMUSG00000035228.16_4	chr7	+	2492	4	FSM	ENSMUSG00000035228.16	ENSMUST00000207974.2	2492	4	-6	6	-6	-3	multi-exon	FALSE	canonical	3	10	junction_1	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACTGGGCCCCAGGTC	69	False	NA	NA	False	ATTAAA	-18	NA	5059732	5063778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_5060659_5060797_5060903_5060990_5061168_5062494
ENSMUSG00000035228.16_8	chr7	+	1991	5	FSM	ENSMUSG00000035228.16	ENSMUST00000045543.8	1534	5	-463	6	-6	-3	multi-exon	FALSE	canonical	3	10	junction_1	4.54835134966506	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACTGGGCCCCAGGTC	69	False	NA	NA	False	ATTAAA	-18	NA	5059732	5063778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_5060659_5060797_5060903_5060990_5061168_5062494_5062705_5063205
ENSMUSG00000035232.9_1	chrX	-	2045	12	FSM	ENSMUSG00000035232.9	ENSMUST00000045748.7	2115	12	45	25	45	-25	multi-exon	FALSE	canonical	3	493	junction_5	23.1352473386711	590	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTTGTCTTGGAATTTC	NA	False	NA	-27	True	ATTAAA	-8	NA	92875762	92808237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_92808862_92812494_92812635_92820914_92821029_92825072_92825184_92825751_92825854_92827385_92827463_92832499_92832578_92843719_92843810_92845814_92846000_92852476_92852549_92857532_92857675_92875452
ENSMUSG00000035234.19_0	chr5	-	2111	9	FSM	ENSMUSG00000035234.19	ENSMUST00000055245.13	2139	9	17	11	-1	0	multi-exon	FALSE	canonical	3	145	junction_2	23.2725025512943	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTAAAGTTTGTAAT	NA	False	NA	-14	True	AATAAA	-8	NA	100968814	100953068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ENSMUSG00000035234.19_1	chr5	-	2094	9	NNC	ENSMUSG00000035234.19	novel	1657	10	NA	NA	-1	0	intron_retention	TRUE	canonical	3	24	junction_6	55.1507876190359	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTAAAGTTTGTAAT	NA	False	NA	-14	True	AATAAA	-8	NA	100968814	100953068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963078_100965827_100965865_100966382_100966474_100968696
ENSMUSG00000035234.19_2	chr5	-	1665	10	FSM	ENSMUSG00000035234.19	ENSMUST00000117364.8	1657	10	-8	0	-1	0	multi-exon	FALSE	canonical	3	80	junction_1	36.8299395118217	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTAAAGTTTGTAAT	NA	False	NA	-14	True	AATAAA	-8	NA	100968814	100953068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100953318_100953763_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ENSMUSG00000035234.19_23	chr5	-	3998	3	FSM	ENSMUSG00000105607.2_ENSMUSG00000035234.19	ENSMUST00000145707.2	454	3	-1	-3543	-1	0	multi-exon	FALSE	canonical	3	160	junction_1	27	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	100968814	100962075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100965865_100966382_100966474_100968696
ENSMUSG00000035234.19_4	chr5	-	1794	9	NIC	ENSMUSG00000035234.19	novel	2139	9	NA	NA	-7	-328	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	59.6226414627866	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCACAAACCTTTCCGC	NA	False	NA	NA	False	NA	NA	NA	100968820	100953396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100954356_100954644_100954757_100957419_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ENSMUSG00000035234.19_7	chr5	-	2105	9	NNC	ENSMUSG00000035234.19	novel	2139	9	NA	NA	-1	-17	intron_retention	FALSE	canonical	3	25	junction_1	53.6860084193265	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATAAATAAATGTAGTGAAA	NA	False	NA	-31	True	NA	NA	NA	100968814	100953085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_100954356_100954633_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ENSMUSG00000035235.14_0	chr14	+	1627	3	FSM	ENSMUSG00000035235.14	ENSMUST00000165015.9	1619	3	-11	3	-11	-3	multi-exon	FALSE	canonical	3	46	junction_1	100	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTGAGTTTGTGCT	NA	False	NA	15	True	AATAAA	-13	NA	61835684	61843392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_61835796_61837242_61837345_61841978
ENSMUSG00000035235.14_2	chr14	+	1547	3	FSM	ENSMUSG00000035235.14	ENSMUST00000039562.8	1550	3	0	3	0	-3	multi-exon	FALSE	canonical	3	148	junction_1	49	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTGAGTTTGTGCT	NA	False	NA	15	True	AATAAA	-13	NA	61836988	61843392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_61837020_61837242_61837345_61841978
ENSMUSG00000035235.14_5	chr14	+	1644	3	NNC	ENSMUSG00000035235.14	novel	1619	3	NA	NA	37	-3	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	103	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTGAGTTTGTGCT	NA	False	NA	15	True	AATAAA	-13	NA	61837025	61843392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_61837154_61837242_61837345_61841978
ENSMUSG00000035235.14_6	chr14	+	1518	2	ISM	ENSMUSG00000035235.14	ENSMUST00000039562.8	1550	3	252	3	252	-3	3prime_fragment	FALSE	canonical	3	246	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTGAGTTTGTGCT	NA	False	NA	15	True	AATAAA	-13	NA	61837240	61843392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_61837345_61841978
ENSMUSG00000035235.14_7	chr14	+	1181	1	ISM	ENSMUSG00000035235.14	ENSMUST00000165015.9	1619	3	6516	3	5223	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTGAGTTTGTGCT	NA	False	NA	15	True	AATAAA	-13	NA	61842211	61843392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_61842200_61843400
ENSMUSG00000035236.18_0	chr2	-	3106	1	ISM	ENSMUSG00000035236.18	ENSMUST00000038874.12	10709	18	121411	4	30087	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGTTTTGTGTATTTCTT	NA	False	NA	NA	False	AATAAA	-12	NA	38959335	38956229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_38956200_38959300
ENSMUSG00000035236.18_1	chr2	-	2288	1	ISM	ENSMUSG00000035236.18	ENSMUST00000038874.12	10709	18	118655	3578	27331	-3578	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAACTCCAGGGCAACT	NA	False	NA	NA	False	AATAAA	-17	NA	38962091	38959803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_38959800_38962100
ENSMUSG00000035236.18_2	chr2	-	2082	18	FSM	ENSMUSG00000035236.18	ENSMUST00000038874.12	10709	18	13	8614	7	-63	multi-exon	FALSE	canonical	2	5	junction_4	3.37403068228235	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTCTCAATCTTGAAATT	NA	False	NA	NA	False	AATATA	-17	NA	39080733	38964839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_38965169_38970088_38970190_38970385_38970560_38973549_38973623_38984714_38984797_38989387_38989488_38992332_38992412_38993214_38993317_38993675_38993778_38996931_38997085_38997219_38997319_38998318_38998416_39011122_39011222_39013015_39013103_39015101_39015198_39022966_39023099_39080000_39080046_39080601
ENSMUSG00000035239.7_1	chr7	-	3290	3	FSM	ENSMUSG00000035239.7	ENSMUST00000036331.7	3341	3	49	2	49	-2	multi-exon	FALSE	canonical	2	4	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCTTGGAGTGAGTTAG	6074	False	NA	NA	False	AATAAA	-13	NA	99477575	99460647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_99463515_99472528_99472741_99477364
ENSMUSG00000035239.7_10	chr7	-	2462	1	ISM	ENSMUSG00000035239.7	ENSMUST00000036331.7	3341	3	14513	4	14513	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACAGCTTGGAGTGAGTT	NA	False	NA	NA	False	AATAAA	-11	NA	99463111	99460649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_99460600_99463100
ENSMUSG00000035242.16_0	chr10	+	1038	5	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	1	0	intron_retention	FALSE	canonical	3	6566	junction_4	420.790624895565	3014	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGCTGTGTCTTGTGTCC	NA	False	NA	13	True	AATAAA	-13	NA	80662520	80665118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664704
ENSMUSG00000035245.13_0	chr6	-	3963	19	NIC	ENSMUSG00000035245.13	novel	4424	18	NA	NA	18	-3	combination_of_known_junctions	FALSE	canonical	3	4	junction_17	11.1428712748068	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATCTGAACATCTTCAG	NA	False	NA	-9	True	AATAAA	-19	NA	97125867	97086987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97124970_97125151_97125220_97125792
ENSMUSG00000035245.13_1	chr6	-	4135	18	FSM	ENSMUSG00000035245.13	ENSMUST00000054344.11	4424	18	286	3	-13	-3	multi-exon	FALSE	canonical	3	33	junction_9	6.4238957016875	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATCTGAACATCTTCAG	NA	False	NA	-9	True	AATAAA	-19	NA	97125857	97086987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97125220_97125792
ENSMUSG00000035245.13_10	chr6	-	2267	2	ISM	ENSMUSG00000035245.13	ENSMUST00000130562.2	439	5	5985	-2157	5985	-5	3prime_fragment	FALSE	canonical	3	57	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATATCTGAACATCTTC	NA	False	NA	-11	True	AATAAA	-17	NA	97089730	97086989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_97089168_97089641
ENSMUSG00000035245.13_24	chr6	-	4613	17	ISM	ENSMUSG00000035245.13	ENSMUST00000054344.11	4424	18	378	6	56	-6	3prime_fragment	FALSE	canonical	3	33	junction_9	6.26716393195519	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACATATCTGAACATCTT	NA	False	NA	-12	True	AATAAA	-16	NA	97125765	97086990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837
ENSMUSG00000035245.13_6	chr6	-	1366	1	ISM	ENSMUSG00000035245.13	ENSMUST00000054344.11	4424	18	37790	3	7362	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATCTGAACATCTTCAG	NA	False	NA	-9	True	AATAAA	-19	NA	97088353	97086987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_97087000_97088400
ENSMUSG00000035246.17_0	chrX	+	4668	8	FSM	ENSMUSG00000035246.17	ENSMUST00000045898.4	4888	8	217	3	217	-3	multi-exon	FALSE	canonical	3	56	junction_6	4.01527694930148	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTTTGGTTGCCTTGTTT	NA	False	NA	1	True	AATAAA	-14	NA	92718924	92793554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_92719083_92745690_92745791_92750163_92750281_92761390_92761543_92763784_92763864_92775282_92775426_92778370_92778560_92789824
ENSMUSG00000035246.17_7	chrX	+	2460	1	ISM	ENSMUSG00000035246.17	ENSMUST00000113933.9	4867	8	92626	3	15927	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTTTGGTTGCCTTGTTT	NA	False	NA	1	True	AATAAA	-14	NA	92791094	92793554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_92791100_92793600
ENSMUSG00000035247.17_0	chr12	-	8862	43	NNC	ENSMUSG00000035247.17	novel	8988	43	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_19	32.5636390713501	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACCTGTGTCGTGTTAC	NA	False	NA	-5	True	ATTAAA	-14	NA	51876334	51790504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311_51816008_51819056_51819234_51819321_51819489_51820609_51820934_51821433_51821574_51823278_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834763_51836954_51837032_51837134_51837399_51838002_51838226_51841196_51841368_51841521_51841661_51844619_51844795_51845436_51845552_51847497_51847597_51847678_51847756_51848946_51849218_51849317_51849600_51850451_51850680_51853144_51853380_51874134_51874297_51875985
ENSMUSG00000035247.17_12	chr12	-	9009	43	FSM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	-22	1	-22	-1	multi-exon	FALSE	canonical	3	48	junction_19	32.7528018915334	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAACCTGTGTCGTGTTA	NA	False	NA	-6	True	ATTAAA	-13	NA	51876341	51790505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311_51816149_51819056_51819234_51819321_51819489_51820609_51820934_51821433_51821574_51823278_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834763_51836954_51837032_51837134_51837399_51838002_51838226_51841196_51841368_51841521_51841661_51844619_51844795_51845436_51845552_51847497_51847597_51847678_51847756_51848946_51849218_51849317_51849600_51850451_51850680_51853144_51853380_51874134_51874297_51875985
ENSMUSG00000035247.17_17	chr12	-	649	1	ISM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	85166	0	20861	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACCTGTGTCGTGTTAC	9617	False	NA	-5	True	ATTAAA	-14	NA	51791153	51790504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51790500_51791200
ENSMUSG00000035247.17_24	chr12	-	3389	15	ISM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	68370	1	4065	-1	3prime_fragment	FALSE	canonical	3	101	junction_11	25.4214476377723	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAACCTGTGTCGTGTTA	NA	False	NA	-6	True	ATTAAA	-13	NA	51807949	51790505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796
ENSMUSG00000035247.17_3	chr12	-	4098	19	ISM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	60783	0	-3522	0	3prime_fragment	FALSE	canonical	3	84	junction_16	29.2769344175392	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACCTGTGTCGTGTTAC	NA	False	NA	-5	True	ATTAAA	-14	NA	51815536	51790504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311
ENSMUSG00000035247.17_5	chr12	-	1865	6	ISM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	80674	0	16369	0	3prime_fragment	FALSE	canonical	3	147	junction_3	12.63962024746	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACCTGTGTCGTGTTAC	6993	False	NA	-5	True	ATTAAA	-14	NA	51795645	51790504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186
ENSMUSG00000035247.17_6	chr12	-	2053	7	ISM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	79177	0	14872	0	3prime_fragment	FALSE	canonical	3	147	junction_3	11.8462370959446	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACCTGTGTCGTGTTAC	5496	False	NA	-5	True	ATTAAA	-14	NA	51797142	51790504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103
ENSMUSG00000035248.10_1	chr13	-	5887	27	NIC	ENSMUSG00000035248.10	novel	5869	28	NA	NA	15	1	combination_of_known_junctions	FALSE	canonical	3	36	junction_26	21.4396428147408	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTATCCACATTATTT	NA	False	NA	-7	True	AATAAA	-18	NA	59970913	59919692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_59920674_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969925_59970446
ENSMUSG00000035248.10_12	chr13	-	5469	27	NNC	ENSMUSG00000035248.10	novel	5869	28	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	26.9885193649965	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTATCCACATTATTT	NA	False	NA	-7	True	AATAAA	-18	NA	59970930	59919692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_59920674_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969938_59970894
ENSMUSG00000035248.10_13	chr13	-	5900	27	NNC	ENSMUSG00000035248.10	novel	5869	28	NA	NA	15	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	26.9885193649965	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTATCCACATTATTT	NA	False	NA	-7	True	AATAAA	-18	NA	59970913	59919692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_59920674_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969938_59970446
ENSMUSG00000035248.10_14	chr13	-	3184	15	ISM	ENSMUSG00000035248.10	ENSMUST00000224480.2	4186	19	9206	3	-3170	1	3prime_fragment	FALSE	canonical	3	83	junction_4	16.2507456657803	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTATCCACATTATTT	NA	False	NA	-7	True	AATAAA	-18	NA	59948114	59919692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_59920674_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454
ENSMUSG00000035248.10_4	chr13	-	5546	27	NIC	ENSMUSG00000035248.10	novel	5869	28	NA	NA	13	1	combination_of_known_junctions	FALSE	canonical	3	43	junction_26	20.4582125694906	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTATCCACATTATTT	NA	False	NA	-7	True	AATAAA	-18	NA	59970915	59919692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_59920674_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969925_59970789
ENSMUSG00000035248.10_49	chr13	-	2289	1	Genic_Genomic	ENSMUSG00000035248.10	novel	NA	NA	NA	NA	1163	976	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGACGGTTTTGTTTTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	59969239	59966950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_59967000_59969200
ENSMUSG00000035248.10_5	chr13	-	5454	27	NIC	ENSMUSG00000035248.10	novel	5869	28	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	25	junction_26	23.0564011314883	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTATCCACATTATTT	NA	False	NA	-7	True	AATAAA	-18	NA	59970928	59919692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_59920674_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969925_59970894
ENSMUSG00000035248.10_50	chr13	-	3100	2	FSM	ENSMUSG00000035248.10	ENSMUST00000225179.2	619	2	12	-2493	12	975	multi-exon	FALSE	canonical	3	43	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAGACGGTTTTGTTTTT	NA	False	NA	-3	True	ATTAAA	-19	NA	59970916	59966951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_59969925_59970789
ENSMUSG00000035248.10_51	chr13	-	3437	2	FSM	ENSMUSG00000035248.10	ENSMUST00000225576.2	2499	2	34	-972	15	972	multi-exon	FALSE	canonical	3	36	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAAGACGGTTTTGTT	NA	False	NA	-6	True	ATTAAA	-16	NA	59970913	59966954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_59969925_59970446
ENSMUSG00000035248.10_52	chr13	-	3451	2	NNC	ENSMUSG00000035248.10	novel	2499	2	NA	NA	14	972	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAAGACGGTTTTGTT	NA	False	NA	-6	True	ATTAAA	-16	NA	59970914	59966954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_59969938_59970446
ENSMUSG00000035266.17_1	chr5	-	3668	18	FSM	ENSMUSG00000035266.17	ENSMUST00000044684.14	3689	18	14	7	-7	-1	multi-exon	FALSE	canonical	3	40	junction_16	11.2714232774287	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGCGCTCTGGGTGATT	NA	False	NA	-2	True	ATTAAA	-19	NA	100946450	100910017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100910503_100912806_100912942_100914553_100914668_100916147_100916322_100918263_100918363_100919599_100919758_100921810_100922031_100926597_100926703_100927017_100927160_100930823_100931064_100933147_100933294_100934849_100934949_100938004_100938103_100939202_100939276_100939642_100939844_100940529_100940709_100944219_100944929_100946159
ENSMUSG00000035266.17_30	chr5	-	220	1	ISM	ENSMUSG00000035266.17	ENSMUST00000044684.14	3689	18	36220	14	3060	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTTAGAAGGCGCTCTG	6302	False	NA	-9	True	ATTAAA	-12	NA	100910244	100910024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_100910000_100910200
ENSMUSG00000035266.17_39	chr5	-	1833	2	FSM	ENSMUSG00000035266.17	ENSMUST00000139203.2	984	2	-853	4	522	-4	multi-exon	FALSE	canonical	3	93	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGAAGGCGCTCTGGGTG	2389	False	NA	-5	True	ATTAAA	-16	NA	100914157	100910020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100910503_100912806
ENSMUSG00000035268.15_0	chr2	+	1024	4	FSM	ENSMUSG00000035268.15	ENSMUST00000064703.13	1036	4	8	4	-8	-2	multi-exon	FALSE	canonical	3	323	junction_1	29.6348143611905	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGCTTATGATCTTTT	8611	False	NA	6	True	AATAAA	-16	NA	163500326	163568070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_163500413_163545405_163545476_163563047_163563222_163567376
ENSMUSG00000035268.15_1	chr2	+	954	3	FSM	ENSMUSG00000035268.15	ENSMUST00000164399.8	983	3	21	8	-8	-2	multi-exon	FALSE	canonical	3	64	junction_1	157.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGCTTATGATCTTTT	8611	False	NA	6	True	AATAAA	-16	NA	163500326	163568070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_163500413_163563047_163563222_163567376
ENSMUSG00000035268.15_11	chr2	+	939	3	ISM	ENSMUSG00000035268.15	ENSMUST00000109400.3	1059	4	9446	3	9446	-3	3prime_fragment	FALSE	canonical	3	379	junction_2	6	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTGGCTTATGATCTTT	NA	False	NA	5	True	AATAAA	-15	NA	163545403	163568069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_163545476_163563047_163563222_163567376
ENSMUSG00000035273.15_0	chr5	-	3063	12	FSM	ENSMUSG00000035273.15	ENSMUST00000045617.15	3117	12	46	8	35	-8	multi-exon	FALSE	canonical	2	11	junction_7	2.99862227317648	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTCAATTTGCATGGTCA	NA	False	NA	NA	False	AATAAA	-11	NA	100867536	100827357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100828897_100832845_100832993_100836686_100836806_100839164_100839280_100840048_100840156_100840750_100840845_100842017_100842066_100843352_100843522_100846778_100846953_100856522_100856649_100859194_100859341_100867257
ENSMUSG00000035274.14_1	chr9	+	2415	2	FSM	ENSMUSG00000035274.14	ENSMUST00000098500.5	3481	2	10	1056	10	-1056	multi-exon	FALSE	canonical	3	125	junction_1	0	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGCATGTTGTGTTT	NA	False	NA	-4	True	AATAAA	-9	NA	85724927	85728037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_85725009_85725703
ENSMUSG00000035274.14_5	chr9	+	2473	2	FSM	ENSMUSG00000035274.14	ENSMUST00000185559.2	409	2	-5	-2059	-5	-1056	multi-exon	FALSE	canonical	3	15	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGCATGTTGTGTTT	NA	False	NA	-4	True	AATAAA	-9	NA	85725408	85728037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_85725548_85725703
ENSMUSG00000035274.14_6	chr9	+	2176	1	ISM	ENSMUSG00000035274.14	ENSMUST00000006559.14	3603	2	1429	1056	448	-1056	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGCATGTTGTGTTT	NA	False	NA	-4	True	AATAAA	-9	NA	85725861	85728037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_85725900_85728000
ENSMUSG00000035275.15_0	chr4	+	4042	12	FSM	ENSMUSG00000035275.15	ENSMUST00000038463.15	4045	12	1	2	1	-2	multi-exon	FALSE	canonical	3	27	junction_5	7.48773101162691	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTTTAGTATGTTTATT	NA	False	NA	6	True	ATTAAA	-16	NA	100926180	101009565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_100926527_100953449_100953517_100959804_100960275_100964399_100964592_100977649_100977777_100988460_100988544_100990783_100990889_100991051_100991164_100993193_100993451_100994907_100995017_100996291_100996429_101007528
ENSMUSG00000035275.15_1	chr4	+	2954	8	FSM	ENSMUSG00000035275.15	ENSMUST00000106955.2	2893	8	1	-62	1	62	multi-exon	FALSE	canonical	3	27	junction_5	8.41524370001322	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTAGTGTTTATTCCTG	NA	False	NA	NA	False	AATAAA	-17	NA	100926180	100992615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_100926527_100953449_100953517_100959804_100960275_100964399_100964592_100977649_100977777_100988460_100988544_100990783_100990889_100991051
ENSMUSG00000035275.15_2	chr4	+	3975	11	NIC	ENSMUSG00000035275.15	novel	4045	12	NA	NA	1	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	12.2212928939618	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTTTAGTATGTTTATT	NA	False	NA	6	True	ATTAAA	-16	NA	100926180	101009565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_100926527_100959804_100960275_100964399_100964592_100977649_100977777_100988460_100988544_100990783_100990889_100991051_100991164_100993193_100993451_100994907_100995017_100996291_100996429_101007528
ENSMUSG00000035275.15_8	chr4	+	3333	10	ISM	ENSMUSG00000035275.15	ENSMUST00000038463.15	4045	12	33921	2	33425	-2	3prime_fragment	FALSE	canonical	3	27	junction_3	7.50473101811924	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTTTAGTATGTTTATT	NA	False	NA	6	True	ATTAAA	-16	NA	100960100	101009565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_100960275_100964399_100964592_100977649_100977777_100988460_100988544_100990783_100990889_100991051_100991164_100993193_100993451_100994907_100995017_100996291_100996429_101007528
ENSMUSG00000035278.10_10	chr10	-	711	4	ISM	ENSMUSG00000035278.10	ENSMUST00000219767.2	1261	5	655	-2	-4	0	3prime_fragment	FALSE	canonical	3	943	junction_2	138.96362433705	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGTCGGAATGAGTGG	NA	False	NA	-4	True	AATAAA	-16	NA	80633739	80631933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606
ENSMUSG00000035278.10_12	chr10	-	1020	4	NIC	ENSMUSG00000035278.10	novel	1261	5	NA	NA	-46	0	intron_retention	FALSE	canonical	3	953	junction_3	134.254319193917	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGTCGGAATGAGTGG	NA	False	NA	-4	True	AATAAA	-16	NA	80634074	80631933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80632357_80632424_80632657_80633606_80633812_80633914
ENSMUSG00000035278.10_18	chr10	-	959	5	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	45	0	intron_retention	FALSE	canonical	3	953	junction_4	141.850934082226	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGTCGGAATGAGTGG	NA	False	NA	-4	True	AATAAA	-16	NA	80634083	80631933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80632357_80632424_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_19	chr10	-	750	4	NIC	ENSMUSG00000035278.10	novel	1261	5	NA	NA	42	0	combination_of_known_splicesites	FALSE	canonical	3	46	junction_3	509.183878596153	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGTCGGAATGAGTGG	NA	False	NA	-4	True	AATAAA	-16	NA	80634086	80631933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80632357_80632424_80632489_80632565_80632657_80633914
ENSMUSG00000035278.10_3	chr10	-	963	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219767.2	1261	5	300	-2	34	0	multi-exon	FALSE	canonical	3	943	junction_2	144.890260197157	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGTCGGAATGAGTGG	NA	False	NA	-4	True	AATAAA	-16	NA	80634094	80631933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633812_80633914
ENSMUSG00000035278.10_5	chr10	-	872	6	FSM	ENSMUSG00000035278.10	ENSMUST00000036805.7	1260	6	387	1	-45	0	multi-exon	FALSE	canonical	3	943	junction_2	140.821021158064	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGTCGGAATGAGTGG	NA	False	NA	-4	True	AATAAA	-16	NA	80634073	80631933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_8	chr10	-	837	6	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	211	junction_2	375.955529285047	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGTCGGAATGAGTGG	NA	False	NA	-4	True	AATAAA	-16	NA	80634074	80631933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80632357_80632424_80632453_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_9	chr10	-	1070	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219378.2	533	5	-211	-326	-46	0	multi-exon	FALSE	canonical	3	76	junction_4	475.904664822693	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGTCGGAATGAGTGG	NA	False	NA	-4	True	AATAAA	-16	NA	80634339	80631933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633914
ENSMUSG00000035284.11_12	chr9	+	3452	25	ISM	ENSMUSG00000035284.11	ENSMUST00000077879.7	11527	85	110913	5	-2479	-1	3prime_fragment	FALSE	canonical	2	5	junction_6	4.83459035378272	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAGAGTGGTGGGCTTGT	4276	False	NA	1	True	ATTAAA	-9	NA	67858590	67902915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_67858982_67860215_67860321_67861005_67861171_67861819_67861949_67862213_67862348_67862948_67863076_67864782_67865019_67868875_67869018_67870330_67870472_67871340_67871423_67871525_67871596_67872746_67872859_67872966_67873081_67874321_67874462_67876556_67876639_67879269_67879384_67880142_67880219_67880563_67880728_67880993_67881040_67883063_67883188_67889786_67889902_67895244_67895334_67900219_67900344_67902141_67902226_67902569
ENSMUSG00000035284.11_13	chr9	+	3001	24	ISM	ENSMUSG00000035284.11	ENSMUST00000077879.7	11527	85	112596	7	-796	-3	3prime_fragment	FALSE	canonical	2	5	junction_5	4.82040401792529	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAAGAGTGGTGGGCTT	1418	False	NA	-1	True	ATTAAA	-7	NA	67860273	67902913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_67860321_67861005_67861171_67861819_67861949_67862213_67862348_67862948_67863076_67864782_67865019_67868875_67869018_67870330_67870472_67871340_67871423_67871525_67871596_67872746_67872859_67872966_67873081_67874321_67874462_67876556_67876639_67879269_67879384_67880142_67880219_67880563_67880728_67880993_67881040_67883063_67883188_67889786_67889902_67895244_67895334_67900219_67900344_67902141_67902226_67902569
ENSMUSG00000035284.11_14	chr9	+	327	1	ISM	ENSMUSG00000035284.11	ENSMUST00000077879.7	11527	85	154894	22	19474	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTAAAATTGTGAAGCA	NA	False	NA	-16	True	AAGAAA	-32	NA	67902571	67902898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_67902600_67902900
ENSMUSG00000035284.11_6	chr9	+	5511	36	ISM	ENSMUSG00000035284.11	ENSMUST00000077879.7	11527	85	96021	7	-17371	-3	3prime_fragment	FALSE	canonical	2	4	junction_11	4.88780239421542	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAAGAGTGGTGGGCTT	3248	False	NA	-1	True	ATTAAA	-7	NA	67843698	67902913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_67843744_67844940_67845189_67846204_67846435_67847740_67847834_67850638_67851005_67851326_67851414_67852768_67852919_67853105_67853371_67855398_67855560_67856597_67856720_67857514_67857810_67858591_67858982_67860215_67860321_67861005_67861171_67861819_67861949_67862213_67862348_67862948_67863076_67864782_67865019_67868875_67869018_67870330_67870472_67871340_67871423_67871525_67871596_67872746_67872859_67872966_67873081_67874321_67874462_67876556_67876639_67879269_67879384_67880142_67880219_67880563_67880728_67880993_67881040_67883063_67883188_67889786_67889902_67895244_67895334_67900219_67900344_67902141_67902226_67902569
ENSMUSG00000035284.11_7	chr9	+	4804	32	ISM	ENSMUSG00000035284.11	ENSMUST00000077879.7	11527	85	103052	7	-10340	-3	3prime_fragment	FALSE	canonical	2	4	junction_7	4.81261782428032	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAAGAGTGGTGGGCTT	NA	False	NA	-1	True	ATTAAA	-7	NA	67850729	67902913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_67851005_67851326_67851414_67852768_67852919_67853105_67853371_67855398_67855560_67856597_67856720_67857514_67857810_67858591_67858982_67860215_67860321_67861005_67861171_67861819_67861949_67862213_67862348_67862948_67863076_67864782_67865019_67868875_67869018_67870330_67870472_67871340_67871423_67871525_67871596_67872746_67872859_67872966_67873081_67874321_67874462_67876556_67876639_67879269_67879384_67880142_67880219_67880563_67880728_67880993_67881040_67883063_67883188_67889786_67889902_67895244_67895334_67900219_67900344_67902141_67902226_67902569
ENSMUSG00000035293.14_1	chr12	+	6554	15	FSM	ENSMUSG00000035293.14	ENSMUST00000054308.13	6803	15	239	10	12	-10	multi-exon	FALSE	canonical	3	106	junction_10	21.5917595770389	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAATGGTCGATGTGAG	NA	False	NA	7	True	AATAAA	-8	NA	51395082	51423759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51412037_51412343_51414557_51414740_51415828_51416002_51418342_51418534_51419212
ENSMUSG00000035293.14_27	chr12	+	3129	1	ISM	ENSMUSG00000035293.14	ENSMUST00000054308.13	6803	15	25789	8	3175	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGGTCGATGTGAGAT	NA	False	NA	9	True	AATAAA	-10	NA	51420632	51423761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_51420600_51423800
ENSMUSG00000035293.14_3	chr12	+	6249	14	NIC	ENSMUSG00000035293.14	novel	6803	15	NA	NA	12	-10	combination_of_known_splicesites	FALSE	canonical	3	12	junction_10	42.4542914662973	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAATGGTCGATGTGAG	NA	False	NA	7	True	AATAAA	-8	NA	51395082	51423759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51414557_51414740_51415828_51416002_51418342_51418534_51419212
ENSMUSG00000035295.11_0	chr2	+	852	1	Genic_Genomic	ENSMUSG00000035295.11_ENSMUSG00000026755.15	novel	NA	NA	NA	NA	-25	6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTGCTTTATTGCTAGT	NA	False	NA	NA	False	AATAAA	-18	NA	38895334	38896186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_38895300_38896200
ENSMUSG00000035297.15_1	chr5	+	1586	10	FSM	ENSMUSG00000035297.15	ENSMUST00000045993.15	1755	10	139	30	5	-7	multi-exon	FALSE	canonical	3	1193	junction_9	105.134834062424	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGGCAGTACTTGGT	5412	False	NA	13	True	AATAAA	-15	NA	100666313	100695639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
ENSMUSG00000035297.15_8	chr5	+	1496	9	NIC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	442.714284273729	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGGCAGTACTTGGT	5422	False	NA	13	True	AATAAA	-15	NA	100666323	100695639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_100666417_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
ENSMUSG00000035299.17_2	chrX	+	2633	14	NNC	ENSMUSG00000035299.17	novel	3974	10	NA	NA	-16	1645	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	6.45695808351794	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCACAGTCACACATCAAC	NA	False	NA	NA	False	NA	NA	NA	168662643	168775439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_168662906_168709949_168710666_168749058_168749155_168759917_168760026_168764880_168765030_168766951_168767080_168767994_168768139_168768931_168769094_168770554_168770763_168771858_168772246_168772319_168772394_168772765_168772851_168775066_168775125_168775383
ENSMUSG00000035299.17_6	chrX	+	2661	13	NNC	ENSMUSG00000035299.17	novel	3974	10	NA	NA	2	-756	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	6.65989239152305	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACACGGTCACTCAGGGTC	NA	False	NA	NA	False	NA	NA	NA	168662619	168772811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_168662906_168709949_168710666_168749058_168749155_168759917_168760026_168764880_168765030_168766951_168767080_168767994_168768139_168768931_168769094_168770554_168770763_168771858_168772246_168772319_168772426_168772610_168772736_168772765
ENSMUSG00000035311.17_2	chr10	+	4790	21	FSM	ENSMUSG00000035311.17	ENSMUST00000020251.10	5390	21	24	576	24	-567	multi-exon	FALSE	canonical	3	179	junction_9	23.2735901828661	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTGTCAAATAGTCTT	NA	False	NA	8	True	AGTAAA	-17	NA	88215111	88282615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_88215398_88236513_88236600_88247777_88247898_88248466_88248509_88250254_88250461_88254986_88255052_88255287_88255423_88264354_88264517_88265322_88265503_88265701_88265873_88267194_88267319_88268302_88268507_88268910_88269951_88271863_88272064_88272213_88272434_88273296_88273411_88274989_88275076_88275312_88275412_88276085_88276254_88279170_88279262_88281624
ENSMUSG00000035311.17_5	chr10	+	4631	22	NIC	ENSMUSG00000035311.17	novel	5390	21	NA	NA	8	-570	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	50.8812587730597	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATCTTTGTCAAATAGT	NA	False	NA	5	True	AGTAAA	-14	NA	88215095	88282612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_88215159_88215330_88215398_88236513_88236600_88247777_88247898_88248466_88248509_88250254_88250461_88254986_88255052_88255287_88255423_88264354_88264517_88265322_88265503_88265701_88265873_88267194_88267319_88268302_88268507_88268910_88269951_88271863_88272064_88272213_88272434_88273296_88273411_88274989_88275076_88275312_88275412_88276085_88276254_88279170_88279262_88281624
ENSMUSG00000035311.17_66	chr10	+	3146	9	ISM	ENSMUSG00000035311.17	ENSMUST00000151273.8	5297	20	54252	3	115	-3	3prime_fragment	FALSE	canonical	3	194	junction_7	15.5638804608619	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAAACTTTGAGTTTATT	NA	False	NA	10	True	CATAAA	-12	NA	88269337	88283179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_88269951_88271863_88272064_88272213_88272434_88273296_88273411_88274989_88275076_88275312_88275412_88276085_88276254_88279170_88279262_88281624
ENSMUSG00000035314.11_0	chr7	+	3710	18	FSM	ENSMUSG00000035314.11	ENSMUST00000037528.10	4611	18	5	896	5	-4	multi-exon	FALSE	canonical	1	1	junction_3	3.03839331062234	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGTGTTGTCTCTGAA	NA	False	NA	NA	False	ATTAAA	-11	NA	99030625	99110188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_99031416_99036310_99036396_99059615_99059699_99073259_99073437_99087454_99087559_99090378_99090473_99091094_99091155_99097328_99097428_99097679_99097774_99098148_99098295_99100920_99101004_99102199_99102351_99102990_99103210_99103681_99103840_99104118_99104267_99105658_99105742_99107980_99108094_99109165
ENSMUSG00000035314.11_4	chr7	+	2457	12	ISM	ENSMUSG00000035314.11	ENSMUST00000037528.10	4611	18	60396	894	-110	-2	3prime_fragment	FALSE	canonical	1	1	junction_10	3.44496278572662	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTTGTCTCTGAATT	NA	False	NA	NA	False	ATTAAA	-13	NA	99091016	99110190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_99091155_99097328_99097428_99097679_99097774_99098148_99098295_99100920_99101004_99102199_99102351_99102990_99103210_99103681_99103840_99104118_99104267_99105658_99105742_99107980_99108094_99109165
ENSMUSG00000035325.17_2	chr5	-	4179	27	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	4	-1	combination_of_known_splicesites	FALSE	canonical	2	466	junction_5	100.698448422967	850	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTATACAGTTAGTCTTT	8112	False	NA	-13	True	ATTAAA	-13	NA	100564089	100509513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ENSMUSG00000035325.17_3	chr5	-	4134	27	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	4	-1	combination_of_known_junctions	FALSE	canonical	2	163	junction_5	145.633410441033	244	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTATACAGTTAGTCTTT	8112	False	NA	-13	True	ATTAAA	-13	NA	100564089	100509513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521283_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ENSMUSG00000035325.17_39	chr5	-	4099	26	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	6	-1	combination_of_known_splicesites	TRUE	canonical	2	64	junction_13	176.439469507251	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTATACAGTTAGTCTTT	8114	False	NA	-13	True	ATTAAA	-13	NA	100564087	100509513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ENSMUSG00000035325.17_6	chr5	-	4062	25	NIC	ENSMUSG00000035325.17	novel	4047	26	NA	NA	4	-1	combination_of_known_splicesites	FALSE	canonical	2	48	junction_13	182.154238673347	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTATACAGTTAGTCTTT	8112	False	NA	-13	True	ATTAAA	-13	NA	100564089	100509513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ENSMUSG00000035325.17_7	chr5	-	4274	28	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	2	-1	combination_of_known_splicesites	FALSE	canonical	2	51	junction_7	217.697988658871	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTATACAGTTAGTCTTT	8110	False	NA	-13	True	ATTAAA	-13	NA	100564091	100509513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100523819_100523913_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ENSMUSG00000035329.8_0	chr12	-	3437	4	FSM	ENSMUSG00000035329.8	ENSMUST00000043204.8	3688	4	242	9	242	-6	multi-exon	FALSE	canonical	3	48	junction_1	0.942809041582063	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGACTATTGTGATG	NA	False	NA	-20	True	AATAAA	-6	NA	59266269	59247449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_59249466_59251096_59251783_59252766_59252878_59265645
ENSMUSG00000035329.8_2	chr12	-	2528	2	FSM	ENSMUSG00000035329.8	ENSMUST00000160204.2	3401	2	871	2	-382	-2	multi-exon	FALSE	canonical	3	48	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACTATTGTGATGAATT	NA	False	NA	-16	True	AATAAA	-10	NA	59251604	59247445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_59249466_59251096
ENSMUSG00000035329.8_3	chr12	-	1010	1	ISM	ENSMUSG00000035329.8	ENSMUST00000043204.8	3688	4	18060	1	2771	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTGTGATGAATTTTAT	NA	False	NA	-12	True	AATAAA	-14	NA	59248451	59247441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_59247400_59248500
ENSMUSG00000035337.4_0	chr9	+	829	1	FSM	ENSMUSG00000035337.4	ENSMUST00000039011.4	1162	1	28	305	28	-305	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAACAAACAAACAAACAAA	3235	False	NA	NA	False	ATTAAA	-10	NA	64142510	64143339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_64142500_64143300
ENSMUSG00000035342.15_11	chr19	+	2714	5	FSM	ENSMUSG00000035342.15	ENSMUST00000178087.3	2694	5	-58	38	-2	34	multi-exon	FALSE	canonical	3	72	junction_1	34.0954542424646	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTGCAATGG	93	False	NA	NA	False	NA	NA	NA	45006592	45015503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_45006670_45009825_45010276_45011980_45012644_45013157_45013419_45014240
ENSMUSG00000035342.15_21	chr19	+	2570	4	ISM	ENSMUSG00000035342.15	ENSMUST00000178087.3	2694	5	3242	38	3242	34	3prime_fragment	FALSE	canonical	3	127	junction_1	14.3372087784044	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTGCAATGG	668	False	NA	NA	False	NA	NA	NA	45009892	45015503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_45010276_45011980_45012644_45013157_45013419_45014240
ENSMUSG00000035342.15_23	chr19	+	1873	3	ISM	ENSMUSG00000035342.15	ENSMUST00000178087.3	2694	5	5644	38	5644	34	3prime_fragment	FALSE	canonical	3	147	junction_1	7.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTGCAATGG	3070	False	NA	NA	False	NA	NA	NA	45012294	45015503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_45012644_45013157_45013419_45014240
ENSMUSG00000035342.15_3	chr19	+	2772	5	FSM	ENSMUSG00000035342.15	ENSMUST00000039016.14	3062	5	324	-34	-11	34	multi-exon	FALSE	canonical	3	54	junction_1	41.4517792139252	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTGCAATGG	1576	False	NA	NA	False	NA	NA	NA	45003627	45015503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_45003763_45009825_45010276_45011980_45012644_45013157_45013419_45014240
ENSMUSG00000035342.15_4	chr19	+	2760	5	FSM	ENSMUSG00000035342.15	ENSMUST00000179108.9	2798	5	-9	47	-9	34	multi-exon	FALSE	canonical	3	23	junction_1	54.407605166925	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTGCAATGG	1578	False	NA	NA	False	NA	NA	NA	45003629	45015503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_45003753_45009825_45010276_45011980_45012644_45013157_45013419_45014240
ENSMUSG00000035351.17_1	chr10	+	1246	10	FSM	ENSMUSG00000035351.17	ENSMUST00000052355.15	1267	10	19	2	-16	0	multi-exon	FALSE	canonical	3	484	junction_1	64.7921653547559	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTCCTATTGTG	NA	False	NA	10	True	AATAAA	-18	NA	87982872	88014250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
ENSMUSG00000035351.17_4	chr10	+	1287	10	FSM	ENSMUSG00000035351.17	ENSMUST00000169309.3	1277	10	-10	0	-10	0	multi-exon	FALSE	canonical	3	51	junction_1	172.048514547568	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTCCTATTGTG	NA	False	NA	10	True	AATAAA	-18	NA	87982928	88014250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_87983032_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
ENSMUSG00000035351.17_8	chr10	+	1186	9	ISM	ENSMUSG00000035351.17	ENSMUST00000169309.3	1277	10	1083	0	1055	0	3prime_fragment	FALSE	canonical	3	491	junction_2	63.2672901268894	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTCCTATTGTG	NA	False	NA	10	True	AATAAA	-18	NA	87984021	88014250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
ENSMUSG00000035354.10_0	chr7	-	3384	14	NIC	ENSMUSG00000035354.10	novel	5157	15	NA	NA	-1	-1	combination_of_known_splicesites	FALSE	canonical	3	4	junction_12	45.2728741753235	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACCTGATTTCCCCCCCA	NA	False	NA	-19	True	AATAAA	-18	NA	98790340	98535957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_98537800_98555698_98555791_98589097_98589177_98628842_98629009_98637390_98637452_98638741_98638830_98641130_98641216_98653786_98653914_98665775_98665882_98715006_98715090_98737307_98737383_98748518_98748681_98767394_98767513_98790040
ENSMUSG00000035354.10_1	chr7	-	3418	15	FSM	ENSMUSG00000035354.10	ENSMUST00000037968.10	5157	15	7	1732	-2	-3	multi-exon	FALSE	canonical	3	139	junction_11	14.4016722385043	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGACCTGATTTCCCCCC	NA	False	NA	-21	True	AATAAA	-16	NA	98790341	98535959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_98537800_98555698_98555791_98589097_98589177_98628842_98629009_98637390_98637452_98638741_98638830_98641130_98641216_98653786_98653914_98665775_98665882_98715006_98715090_98737307_98737383_98748518_98748681_98758269_98758305_98767394_98767513_98790040
ENSMUSG00000035354.10_3	chr7	-	384	1	ISM	ENSMUSG00000035354.10	ENSMUST00000037968.10	5157	15	254009	1728	56773	1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGATTTCCCCCCCAGC	2794	False	NA	-17	True	AATAAA	-20	NA	98536339	98535955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_98536000_98536300
ENSMUSG00000035354.10_4	chr7	-	2857	10	NNC	ENSMUSG00000035354.10	novel	5157	15	NA	NA	-15775	-3	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_9	49.6083425879255	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGACCTGATTTCCCCCC	NA	False	NA	-21	True	AATAAA	-16	NA	98681626	98535959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_98537800_98555698_98555791_98589097_98589177_98628842_98629009_98637390_98637452_98638741_98638830_98641130_98641216_98653786_98653914_98665775_98665882_98681413
ENSMUSG00000035355.16_0	chr11	-	3751	17	FSM	ENSMUSG00000035355.16	ENSMUST00000107361.9	3748	17	-6	3	-6	-3	multi-exon	TRUE	canonical	0	0	junction_1	0.845484328654293	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTTGACTCTGTCTGTT	158	False	NA	NA	False	AATAAA	-16	NA	100650572	100631204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100631448_100632118_100632825_100634949_100635027_100636061_100636169_100636440_100636794_100636990_100637030_100637570_100637816_100638388_100638639_100640434_100640635_100641057_100641253_100643070_100643279_100645959_100646118_100646495_100646740_100647685_100647814_100647904_100648052_100648392_100648627_100650355
ENSMUSG00000035356.18_0	chr16	-	3624	12	FSM	ENSMUSG00000035356.18	ENSMUST00000114458.8	3627	12	0	3	0	0	multi-exon	FALSE	canonical	1	2	junction_4	2.64418901313618	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTTTTTCTTTTCTAGT	NA	False	NA	-13	True	AATAAA	-14	NA	55642501	55631740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_55633147_55634312_55634481_55634603_55634715_55636002_55636173_55636430_55636495_55636679_55636827_55637193_55637300_55638091_55638898_55639110_55639215_55639354_55639386_55639929_55640070_55642130
ENSMUSG00000035357.18_0	chr6	-	4205	10	FSM	ENSMUSG00000035357.18	ENSMUST00000075994.11	4104	10	-109	8	-109	-8	multi-exon	FALSE	canonical	3	11	junction_6	4.85340659285368	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGCTCTGACATGGGT	NA	False	NA	-12	True	AATAAA	-16	NA	101354967	101126577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_101129030_101130179_101130297_101131154_101131257_101132830_101132894_101133874_101133974_101146094_101146183_101149160_101149409_101331354_101331463_101339099_101339187_101354126
ENSMUSG00000035357.18_11	chr6	-	3339	9	ISM	ENSMUSG00000035357.18	ENSMUST00000075994.11	4104	10	15674	31	-7213	-31	3prime_fragment	FALSE	canonical	3	11	junction_6	4.99374608885954	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAATTATTATTTTCT	NA	False	NA	-35	True	AGTAAA	-9	NA	101339184	101126600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_101129030_101130179_101130297_101131154_101131257_101132830_101132894_101133874_101133974_101146094_101146183_101149160_101149409_101331354_101331463_101339099
ENSMUSG00000035357.18_3	chr6	-	1830	1	ISM	ENSMUSG00000035357.18	ENSMUST00000075994.11	4104	10	226453	6	47742	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCTCTGACATGGGTGT	NA	False	NA	-10	True	AATAAA	-18	NA	101128405	101126575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_101126600_101128400
ENSMUSG00000035357.18_5	chr6	-	3268	8	NNC	ENSMUSG00000035357.18	novel	1808	8	NA	NA	61993	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	8.39095723176481	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGACCTGCTCTGACATG	NA	False	NA	-15	True	AATAAA	-13	NA	101269978	101126580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_101129030_101130179_101130297_101131154_101131257_101132830_101132894_101133874_101133974_101146094_101146183_101149160_101149409_101269876
ENSMUSG00000035365.16_19	chr10	-	1972	3	ISM	ENSMUSG00000035365.16	ENSMUST00000048518.16	3594	11	36558	1	36495	-1	3prime_fragment	FALSE	canonical	3	68	junction_2	7	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGGGTGGTTTATACT	NA	False	NA	-12	True	ATTAAA	-12	NA	87946245	87927294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_87929049_87929456_87929590_87946160
ENSMUSG00000035365.16_23	chr10	-	3274	12	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	-17	-1	intron_retention	FALSE	canonical	2	6	junction_11	23.4016316447457	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGGGTGGTTTATACT	NA	False	NA	-12	True	ATTAAA	-12	NA	87982757	87927294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982357_87982441_87982713
ENSMUSG00000035365.16_29	chr10	-	2745	12	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	25	-613	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	22.0262803213204	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTGAAAAATCCCCATTT	NA	False	NA	-6	True	AATAAA	-17	NA	87982770	87927906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982357_87982511_87982713
ENSMUSG00000035365.16_32	chr10	-	3506	11	FSM	ENSMUSG00000035365.16	ENSMUST00000048518.16	3594	11	65	23	2	-23	multi-exon	FALSE	canonical	3	41	junction_10	14.3666279968544	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATTAAAATACAAAGT	NA	False	NA	-34	True	NA	NA	NA	87982738	87927316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982357
ENSMUSG00000035365.16_8	chr10	-	3201	11	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	27	-2	intron_retention	FALSE	canonical	3	53	junction_4	10.555093557141	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTCTGGGTGGTTTATAC	NA	False	NA	-13	True	ATTAAA	-11	NA	87982768	87927295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982713
ENSMUSG00000035367.10_0	chr13	+	2426	3	FSM	ENSMUSG00000035367.10	ENSMUST00000042450.10	3855	3	369	1060	-68	-4	multi-exon	FALSE	canonical	3	159	junction_1	108.5	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCAAAATATGTGAAAGAA	NA	False	NA	12	True	AATAAA	-25	NA	58550445	58557902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_58550604_58554815_58554905_58555723
ENSMUSG00000035367.10_1	chr13	+	2534	3	FSM	ENSMUSG00000035367.10	ENSMUST00000225828.2	3594	3	8	1052	-7	0	multi-exon	FALSE	canonical	3	21	junction_1	177.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATGTGAAAGAATGTT	NA	False	NA	16	True	AATAAA	-29	NA	58550069	58557906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_58550332_58554815_58554905_58555723
ENSMUSG00000035367.10_17	chr13	+	1359	1	ISM	ENSMUSG00000035367.10	ENSMUST00000225828.2	3594	3	6486	1052	3668	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATGTGAAAGAATGTT	NA	False	NA	16	True	AATAAA	-29	NA	58556547	58557906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_58556500_58557900
ENSMUSG00000035367.10_4	chr13	+	2511	4	FSM	ENSMUSG00000035367.10	ENSMUST00000225815.2	2447	4	-68	4	-68	-4	multi-exon	FALSE	canonical	1	2	junction_2	162.181653983701	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCAAAATATGTGAAAGAA	NA	False	NA	12	True	AATAAA	-25	NA	58550445	58557902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_58550604_58552384_58552470_58554815_58554905_58555723
ENSMUSG00000035367.10_5	chr13	+	2511	4	NNC	ENSMUSG00000035367.10	novel	2447	4	NA	NA	-65	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	169.267703817224	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCAAAATATGTGAAAGAA	NA	False	NA	12	True	AATAAA	-25	NA	58550448	58557902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_58550604_58552381_58552470_58554815_58554905_58555723
ENSMUSG00000035367.10_8	chr13	+	5806	2	FSM	ENSMUSG00000035367.10	ENSMUST00000224479.2	4212	2	-1598	4	525	0	multi-exon	FALSE	canonical	3	376	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATGTGAAAGAATGTT	NA	False	NA	16	True	AATAAA	-29	NA	58551281	58557906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_58554905_58555723
ENSMUSG00000035370.10_2	chr10	+	1738	6	FSM	ENSMUSG00000035370.10	ENSMUST00000178231.2	4516	6	2778	0	1984	0	multi-exon	FALSE	canonical	3	584	junction_4	45.0271029492238	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	80444632	80451617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000035370.10_3	chr10	+	2021	7	NIC	ENSMUSG00000035370.10	novel	4516	6	NA	NA	-232	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	244.454097031642	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	80442416	80451617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80442704_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000035370.10_6	chr10	+	1689	5	ISM	ENSMUSG00000035370.10	ENSMUST00000178231.2	4516	6	3305	1	2511	-1	3prime_fragment	FALSE	canonical	3	584	junction_3	41.7193000900063	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGGGCCTTTATCTGTG	NA	False	NA	12	True	AATAAA	-12	NA	80445159	80451616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000035370.10_8	chr10	+	2494	2	FSM	ENSMUSG00000113949.2	ENSMUST00000221236.2	390	2	-1078	-1026	-1078	-1	multi-exon	FALSE	canonical	3	699	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGGGCCTTTATCTGTG	NA	False	NA	12	True	AATAAA	-12	NA	80446978	80451616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80448294_80450437
ENSMUSG00000035370.10_9	chr10	+	1007	1	ISM	ENSMUSG00000113949.2	ENSMUST00000079883.12	1804	7	11897	0	2554	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	80450610	80451617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80450600_80451600
ENSMUSG00000035372.3_0	chr19	+	1897	4	FSM	ENSMUSG00000035372.3	ENSMUST00000039048.2	1882	4	-17	2	-17	1	multi-exon	FALSE	canonical	3	184	junction_1	53.9897109539298	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCTTGTGTGGGTCTGTG	NA	False	NA	9	True	ATTAAA	-21	NA	3758315	3767879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3758437_3764403_3764626_3765637_3765803_3766490
ENSMUSG00000035372.3_15	chr19	+	1547	2	ISM	ENSMUSG00000035372.3	ENSMUST00000235837.2	1875	4	7234	1	7232	1	3prime_fragment	FALSE	canonical	3	297	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCTTGTGTGGGTCTGTG	NA	False	NA	9	True	ATTAAA	-21	NA	3765644	3767879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_3765803_3766490
ENSMUSG00000035372.3_2	chr19	+	2252	4	FSM	ENSMUSG00000035372.3	ENSMUST00000237955.2	2193	4	-52	-7	-14	0	multi-exon	FALSE	canonical	3	38	junction_1	122.806984962402	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGTGGGTCTGTGT	NA	False	NA	10	True	ATTAAA	-22	NA	3758318	3767880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3758437_3764046_3764626_3765637_3765803_3766490
ENSMUSG00000035372.3_3	chr19	+	1898	4	FSM	ENSMUSG00000035372.3	ENSMUST00000237320.2	772	4	20	-1146	20	0	multi-exon	FALSE	canonical	3	113	junction_1	87.4541149530554	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGTGGGTCTGTGT	NA	False	NA	10	True	ATTAAA	-22	NA	3758312	3767880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3758437_3764406_3764626_3765637_3765803_3766490
ENSMUSG00000035376.11_1	chr16	+	958	7	FSM	ENSMUSG00000035376.11	ENSMUST00000061156.10	3598	7	7	2633	5	-2633	multi-exon	FALSE	canonical	3	1242	junction_3	97.2996517065823	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATAAAAAGA	NA	False	NA	36	True	NA	NA	NA	34842804	34926914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_34843006_34846194_34846313_34869089_34869109_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035376.11_3	chr16	+	939	6	NIC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	5	-2633	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	561.414428029776	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATAAAAAGA	NA	False	NA	36	True	NA	NA	NA	34842804	34926914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_34843006_34846194_34846313_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035378.18_2	chr6	-	1970	11	FSM	ENSMUSG00000035378.18	ENSMUST00000170667.8	1990	11	19	1	1	0	multi-exon	FALSE	canonical	0	0	junction_2	64.1530201939083	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAGGTGTAAATAATTAG	NA	False	NA	-3	True	AATAAA	-17	NA	100648099	100550043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
ENSMUSG00000035382.10_0	chr9	+	3408	17	FSM	ENSMUSG00000035382.10	ENSMUST00000039059.8	3876	17	468	0	-20	0	multi-exon	FALSE	canonical	3	28	junction_7	6.25	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACCCAAACAAGTCCAC	NA	False	NA	NA	False	AATAAA	-13	NA	45818262	45841010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_45818338_45819825_45819950_45820557_45821035_45821672_45821808_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837208_45837366_45838031_45838127_45838872_45838967_45839184_45839303_45839808
ENSMUSG00000035382.10_17	chr9	+	3445	16	ISM	ENSMUSG00000035382.10	ENSMUST00000216672.2	3599	17	1431	-53	1431	0	3prime_fragment	FALSE	canonical	3	28	junction_6	6.42702626933068	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACCCAAACAAGTCCAC	NA	False	NA	NA	False	AATAAA	-13	NA	45819713	45841010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_45819950_45820557_45821035_45821672_45821808_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837208_45837366_45838031_45838127_45838872_45838967_45839184_45839303_45839808
ENSMUSG00000035382.10_18	chr9	+	3033	15	ISM	ENSMUSG00000035382.10	ENSMUST00000216672.2	3599	17	2451	-53	-990	0	3prime_fragment	FALSE	canonical	3	28	junction_5	6.58577626249115	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACCCAAACAAGTCCAC	NA	False	NA	NA	False	AATAAA	-13	NA	45820733	45841010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_45821035_45821672_45821808_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837208_45837366_45838031_45838127_45838872_45838967_45839184_45839303_45839808
ENSMUSG00000035390.17_4	chr7	+	2153	13	ISM	ENSMUSG00000035390.17	ENSMUST00000048248.9	2996	19	8110	82	6795	-66	3prime_fragment	TRUE	canonical	2	3	junction_4	4.15999465811623	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGCCTGCGTCTGTGTC	NA	False	NA	-78	True	NA	NA	NA	4702036	4718914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_4702106_4707126_4707274_4707682_4707715_4708066_4708238_4709018_4709117_4709333_4709494_4709660_4709722_4710114_4710485_4710896_4710946_4711047_4711172_4711816_4712016_4713420_4713511_4718331
ENSMUSG00000035390.17_5	chr7	+	1780	9	ISM	ENSMUSG00000035390.17	ENSMUST00000048248.9	2996	19	15123	5	-2927	-5	3prime_fragment	FALSE	canonical	2	7	junction_1	3.95087015731978	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGACAGCTGGCTGGCCTT	NA	False	NA	-1	True	NA	NA	NA	4709049	4718991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_4709117_4709333_4709494_4709660_4709722_4710114_4710485_4710896_4710946_4711047_4711172_4711816_4712016_4713420_4713511_4718331
ENSMUSG00000035390.17_6	chr7	+	1499	6	ISM	ENSMUSG00000035390.17	ENSMUST00000048248.9	2996	19	16181	5	-1869	-5	3prime_fragment	FALSE	canonical	3	7	junction_3	4.35430821141545	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGACAGCTGGCTGGCCTT	NA	False	NA	-1	True	NA	NA	NA	4710107	4718991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_4710485_4710896_4710946_4711047_4711172_4711816_4712016_4713420_4713511_4718331
ENSMUSG00000035390.17_7	chr7	+	1000	4	ISM	ENSMUSG00000035390.17	ENSMUST00000048248.9	2996	19	17194	5	-856	-5	3prime_fragment	FALSE	canonical	3	7	junction_1	5.31245915016974	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGACAGCTGGCTGGCCTT	NA	False	NA	-1	True	NA	NA	NA	4711120	4718991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_4711172_4711816_4712016_4713420_4713511_4718331
ENSMUSG00000035392.18_0	chr2	-	4326	22	FSM	ENSMUSG00000035392.18	ENSMUST00000102787.10	4342	22	6	10	6	-10	multi-exon	FALSE	canonical	3	52	junction_2	9.9979589753844	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGACTGACCGTTT	NA	False	NA	-9	True	AATAAA	-8	NA	38177381	37689012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_37691263_37692026_37692286_37706927_37707017_37734788_37734921_37742407_37742465_37744004_37744077_37746127_37746169_37748029_37748118_37748379_37748485_37826630_37826757_37851652_37851755_37873071_37873118_37893385_37893487_37911367_37911479_37929163_37929218_37933350_37933432_37938736_37938807_38016540_38016661_38026937_38026988_38049818_38049863_38133413_38133485_38177124
ENSMUSG00000035392.18_1	chr2	-	1382	1	ISM	ENSMUSG00000035392.18	ENSMUST00000102787.10	4342	22	486993	10	52058	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGACTGACCGTTT	NA	False	NA	-9	True	AATAAA	-8	NA	37690394	37689012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_37689000_37690400
ENSMUSG00000035392.18_11	chr2	-	2449	2	ISM	ENSMUSG00000035392.18	ENSMUST00000136460.2	833	6	50227	-2071	50227	-10	3prime_fragment	FALSE	canonical	3	65	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGACTGACCGTTT	NA	False	NA	-9	True	AATAAA	-8	NA	37692225	37689012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_37691263_37692026
ENSMUSG00000035392.18_3	chr2	-	4278	21	NIC	ENSMUSG00000035392.18	novel	4342	22	NA	NA	-8	-5	combination_of_known_junctions	FALSE	canonical	3	21	junction_18	14.3993055388099	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGACTGACCGTTTAAGAA	NA	False	NA	-4	True	AATAAA	-13	NA	38177378	37689007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_37691263_37692026_37692286_37706927_37707017_37734788_37734921_37742407_37742465_37744004_37744077_37746127_37746169_37748029_37748118_37748379_37748485_37826630_37826757_37851652_37851755_37873071_37873118_37893385_37893487_37911367_37911479_37929163_37929218_37933350_37933432_37938736_37938807_38016540_38016661_38049818_38049863_38133413_38133485_38177124
ENSMUSG00000035392.18_33	chr2	-	4272	21	NIC	ENSMUSG00000035392.18	novel	4342	22	NA	NA	-1	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	17.917868176767	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGACTGACCGTTT	NA	False	NA	-9	True	AATAAA	-8	NA	38177371	37689012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_37691263_37692026_37692286_37706927_37707017_37734788_37734921_37742407_37742465_37744004_37744077_37746127_37746169_37748029_37748118_37748379_37748485_37826630_37826757_37851652_37851755_37873071_37873118_37893385_37893487_37911367_37911479_37929163_37929218_37933350_37933432_37938736_37938807_38016540_38016661_38026937_38026988_38133413_38133485_38177124
ENSMUSG00000035392.18_4	chr2	-	4456	23	NIC	ENSMUSG00000035392.18	novel	4342	22	NA	NA	5	-10	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	20.1983961395842	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGACTGACCGTTT	NA	False	NA	-9	True	AATAAA	-8	NA	38177382	37689012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_37691263_37692026_37692286_37695083_37695213_37706927_37707017_37734788_37734921_37742407_37742465_37744004_37744077_37746127_37746169_37748029_37748118_37748379_37748485_37826630_37826757_37851652_37851755_37873071_37873118_37893385_37893487_37911367_37911479_37929163_37929218_37933350_37933432_37938736_37938807_38016540_38016661_38026937_38026988_38049818_38049863_38133413_38133485_38177124
ENSMUSG00000035392.18_6	chr2	-	4154	20	NIC	ENSMUSG00000035392.18	novel	4342	22	NA	NA	8	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	18.3463145513678	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGACTGACCGTTT	NA	False	NA	-9	True	AATAAA	-8	NA	38177379	37689012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_37691263_37692026_37692286_37706927_37707017_37734788_37734921_37742407_37742465_37744004_37744077_37746127_37746169_37748029_37748118_37748379_37748485_37826630_37826757_37851652_37851755_37873071_37873118_37893385_37893487_37911367_37911479_37929163_37929218_37933350_37933432_37938736_37938807_38049818_38049863_38133413_38133485_38177124
ENSMUSG00000035395.12_1	chrX	-	510	1	ISM	ENSMUSG00000035395.12	ENSMUST00000113959.8	4183	12	5330	2	5330	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGTGTTTTCTTTTAATG	NA	False	NA	NA	False	AAGAAA	-42	NA	88447965	88447455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_88447500_88448000
ENSMUSG00000035397.9_0	chr10	-	2708	2	FSM	ENSMUSG00000035397.9	ENSMUST00000038558.9	2674	2	-39	5	-39	-5	multi-exon	FALSE	canonical	3	135	junction_1	0	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAACCTGCCCTTCTGTCT	8667	False	NA	-11	True	ATTAAA	-13	NA	80413194	80402962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80405057_80412580
ENSMUSG00000035397.9_2	chr10	-	1146	1	ISM	ENSMUSG00000035397.9	ENSMUST00000038558.9	2674	2	9047	5	9047	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAACCTGCCCTTCTGTCT	8606	False	NA	-11	True	ATTAAA	-13	NA	80404108	80402962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80403000_80404100
ENSMUSG00000035399.13_1	chr2	-	1569	4	FSM	ENSMUSG00000035399.13	ENSMUST00000046908.10	1620	4	44	7	44	-7	multi-exon	FALSE	canonical	3	367	junction_1	31.0268700752536	363	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCAGAGGTATTGTGTGTT	NA	False	NA	-11	True	NA	NA	NA	163261404	163247748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_163249010_163253316_163253431_163257454_163257576_163261331
ENSMUSG00000035401.10_0	chr7	-	5086	20	FSM	ENSMUSG00000035401.10	ENSMUST00000205276.2	7693	20	202	2405	-13	-606	multi-exon	FALSE	canonical	3	39	junction_14	16.3198636678896	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGAATTTCACTATAAAT	3708	False	NA	-39	True	AATAGA	-19	NA	98305784	98238748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ENSMUSG00000035401.10_12	chr7	-	5270	21	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-9	-571	combination_of_known_junctions	FALSE	canonical	3	18	junction_15	19.5153144991312	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAAATGTTGAACTGTATA	3712	False	NA	-4	True	TATAAA	-17	NA	98305780	98238713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ENSMUSG00000035401.10_13	chr7	-	4236	20	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-20	-18	combination_of_known_junctions	FALSE	canonical	3	18	junction_16	21.478198699858	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGTAAAAAAGAAAAAAAAAA	3482	False	NA	NA	False	NA	NA	NA	98306010	98239824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98248958_98249001_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ENSMUSG00000035401.10_14	chr7	-	5064	19	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-1	-574	combination_of_known_junctions	FALSE	canonical	3	18	junction_15	18.2976082900417	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGACAAATGTTGAACTGT	3720	False	NA	-7	True	TATAAA	-14	NA	98305772	98238716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ENSMUSG00000035401.10_2	chr7	-	2752	1	ISM	ENSMUSG00000035401.10	ENSMUST00000205276.2	7693	20	66885	6	4341	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTATGGTGAATTTTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	98239101	98236349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_98236300_98239100
ENSMUSG00000035401.10_20	chr7	-	5523	20	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-20	-570	combination_of_known_junctions	TRUE	canonical	3	9	junction_2	20.3478067859224	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATGTTGAACTGTATAT	3482	False	NA	-3	True	TATAAA	-18	NA	98306010	98238712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_98240092_98242537_98243193_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ENSMUSG00000035401.10_25	chr7	-	5176	21	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	2	-574	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	19.749113904173	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGACAAATGTTGAACTGT	3692	False	NA	-7	True	TATAAA	-14	NA	98305800	98238716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98248958_98249001_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ENSMUSG00000035401.10_3	chr7	-	3895	18	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-12	-15	combination_of_known_junctions	FALSE	canonical	3	11	junction_15	19.8412383808176	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	3709	False	NA	NA	False	NA	NA	NA	98305783	98239821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98297011_98297112_98303950_98304060_98305680
ENSMUSG00000035401.10_40	chr7	-	1265	3	ISM	ENSMUSG00000035401.10	ENSMUST00000205276.2	7693	20	61513	3478	-250	-15	3prime_fragment	FALSE	canonical	3	62	junction_2	8	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98244473	98239821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_98240092_98242537_98243018_98243958
ENSMUSG00000035401.10_58	chr7	-	4119	20	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-11	-18	combination_of_known_junctions	FALSE	canonical	3	18	junction_15	21.2537759395772	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGTAAAAAAGAAAAAAAAAA	3710	False	NA	NA	False	NA	NA	NA	98305782	98239824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98295655_98295731_98297011_98297112_98303950_98304060_98305680
ENSMUSG00000035407.9_0	chr4	-	4945	10	FSM	ENSMUSG00000035407.9	ENSMUST00000102790.4	4795	10	-152	2	-152	-2	multi-exon	FALSE	canonical	1	2	junction_7	7.99228022593531	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGTCTTACGATTTCTT	NA	False	NA	-13	True	ATTAAA	-13	NA	98705926	98643136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_98644823_98649639_98649841_98653699_98653843_98659492_98659713_98661619_98661708_98662910_98663130_98665235_98665348_98666500_98668430_98673895_98673979_98705662
ENSMUSG00000035407.9_3	chr4	-	2321	5	ISM	ENSMUSG00000035407.9	ENSMUST00000102790.4	4795	10	44084	2	-1978	-2	3prime_fragment	FALSE	canonical	3	21	junction_3	1.92028643696715	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGTCTTACGATTTCTT	NA	False	NA	-13	True	ATTAAA	-13	NA	98661690	98643136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_98644823_98649639_98649841_98653699_98653843_98659492_98659713_98661619
ENSMUSG00000035407.9_4	chr4	-	1369	1	ISM	ENSMUSG00000035407.9	ENSMUST00000102790.4	4795	10	61269	2	15207	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGTCTTACGATTTCTT	NA	False	NA	-13	True	ATTAAA	-13	NA	98644505	98643136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_98643100_98644500
ENSMUSG00000035407.9_5	chr4	-	2732	3	ISM	ENSMUSG00000035407.9	ENSMUST00000102790.4	4795	10	51230	2	5168	-2	3prime_fragment	FALSE	canonical	3	23	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGTCTTACGATTTCTT	NA	False	NA	-13	True	ATTAAA	-13	NA	98654544	98643136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_98644823_98649639_98649841_98653699
ENSMUSG00000035407.9_6	chr4	-	1845	2	ISM	ENSMUSG00000035407.9	ENSMUST00000102790.4	4795	10	55976	2	9914	-2	3prime_fragment	FALSE	canonical	3	23	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGTCTTACGATTTCTT	NA	False	NA	-13	True	ATTAAA	-13	NA	98649798	98643136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_98644823_98649639
ENSMUSG00000035407.9_7	chr4	-	3619	8	ISM	ENSMUSG00000035407.9	ENSMUST00000102790.4	4795	10	38322	4	-7740	-4	3prime_fragment	FALSE	canonical	1	2	junction_7	8.97161055320433	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATTGGTCTTACGATTTC	NA	False	NA	-15	True	ATTAAA	-11	NA	98667452	98643138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_98644823_98649639_98649841_98653699_98653843_98659492_98659713_98661619_98661708_98662910_98663130_98665235_98665348_98666500
ENSMUSG00000035407.9_8	chr4	-	2098	4	ISM	ENSMUSG00000035407.9	ENSMUST00000102790.4	4795	10	46214	2	152	-2	3prime_fragment	FALSE	canonical	3	21	junction_3	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGTCTTACGATTTCTT	NA	False	NA	-13	True	ATTAAA	-13	NA	98659560	98643136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_98644823_98649639_98649841_98653699_98653843_98659492
ENSMUSG00000035413.9_0	chr11	+	1439	7	FSM	ENSMUSG00000035413.9	ENSMUST00000040865.9	1633	7	192	2	192	-2	multi-exon	FALSE	canonical	3	29	junction_1	3.67045259092421	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTGTAGTTACCGAGTC	NA	False	NA	3	True	AGTAAA	-21	NA	80701192	80712857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80701286_80703331_80703516_80705044_80705177_80706491_80706526_80708328_80708445_80710755_80710816_80712037
ENSMUSG00000035427.19_2	chrX	-	2409	3	FSM	ENSMUSG00000035427.19	ENSMUST00000113969.10	2403	3	-12	6	-12	-4	multi-exon	FALSE	canonical	3	26	junction_1	2.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAGAAAAAGAGATTTTA	NA	False	NA	NA	False	AATAAA	-6	NA	85299837	85293865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_85296089_85298945_85299028_85299733
ENSMUSG00000035427.19_6	chrX	-	2157	3	NNC	ENSMUSG00000035427.19	novel	2401	3	NA	NA	-21	-49172	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	13	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAGAGATTTTATTCT	NA	False	NA	NA	False	AATAAA	-10	NA	85348720	85343033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_85344996_85347819_85347902_85348607
ENSMUSG00000035437.16_0	chr2	+	4948	26	FSM	ENSMUSG00000035437.16	ENSMUST00000061179.12	4967	26	11	8	0	-8	multi-exon	FALSE	canonical	3	116	junction_1	34.3579743291132	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACAGCATTGCTTCATA	1556	False	NA	-1	True	ATTAAA	-10	NA	37333307	37456441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
ENSMUSG00000035437.16_22	chr2	+	4844	26	FSM	ENSMUSG00000035437.16	ENSMUST00000112920.2	4847	26	-20	23	2	-6	multi-exon	FALSE	canonical	3	120	junction_1	33.7498088883478	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGCATTGCTTCATACA	NA	False	NA	1	True	ATTAAA	-12	NA	37342258	37456443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
ENSMUSG00000035437.16_24	chr2	+	4702	26	NIC	ENSMUSG00000035437.16	novel	4847	26	NA	NA	3	-8	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	48.8404094986928	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACAGCATTGCTTCATA	NA	False	NA	-1	True	ATTAAA	-10	NA	37342259	37456441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_37342314_37359527_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
ENSMUSG00000035437.16_3	chr2	+	4807	26	NIC	ENSMUSG00000035437.16	novel	4967	26	NA	NA	2	-8	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	49.1926823826471	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACAGCATTGCTTCATA	1558	False	NA	-1	True	ATTAAA	-10	NA	37333309	37456441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_37333469_37359527_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
ENSMUSG00000035439.14_1	chr8	-	1510	11	FSM	ENSMUSG00000035439.14	ENSMUST00000035960.13	2013	11	502	1	10	-1	multi-exon	FALSE	canonical	3	458	junction_6	24.6578587878185	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTACAGTGTGATGCGTTT	640	False	NA	-10	True	NA	NA	NA	71725076	71703769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ENSMUSG00000035439.14_13	chr8	-	2173	10	ISM	ENSMUSG00000035439.14	ENSMUST00000035960.13	2013	11	2835	4	2259	-4	3prime_fragment	FALSE	canonical	3	458	junction_6	25.5420254038006	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAGTACAGTGTGATGCG	2973	False	NA	-13	True	NA	NA	NA	71722743	71703772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869
ENSMUSG00000035439.14_2	chr8	-	1516	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	-64	0	2	0	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	632	False	NA	-9	True	NA	NA	NA	71725084	71703768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ENSMUSG00000035441.15_0	chr11	-	5366	22	FSM	ENSMUSG00000035441.15	ENSMUST00000041065.14	5354	22	-13	1	-13	-1	multi-exon	FALSE	canonical	1	2	junction_3	2.91683672973592	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAAGGTGTTCTGTTT	NA	False	NA	0	True	AATAAA	-13	NA	80670864	80372952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_80375209_80448259_80448415_80477672_80477787_80483612_80483718_80484564_80484710_80492408_80492633_80528699_80528908_80531044_80531212_80548218_80548352_80553866_80553942_80557400_80557472_80561674_80561846_80565439_80565555_80565642_80565789_80566876_80567081_80567647_80567765_80570845_80570942_80573207_80573262_80575150_80575317_80576675_80576770_80583706_80583916_80670523
ENSMUSG00000035443.11_0	chr9	+	777	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213770.2	775	7	0	-2	0	-1	multi-exon	FALSE	canonical	3	323	junction_6	112.305634567263	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTGGAAGTGTTTTCTT	NA	False	NA	32	True	AATAAA	-13	NA	26911005	26918628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ENSMUSG00000035443.11_1	chr9	+	926	8	FSM	ENSMUSG00000035443.11	ENSMUST00000039161.10	918	8	-12	4	0	0	multi-exon	FALSE	canonical	3	218	junction_7	172.705955134082	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTTGGAAGTGTTTTC	NA	False	NA	30	True	AATAAA	-11	NA	26911005	26918626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
ENSMUSG00000035443.11_16	chr9	+	942	6	NIC	ENSMUSG00000035443.11	novel	775	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	323	junction_5	122.182486470034	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTTGGAAGTGTTTTC	NA	False	NA	30	True	AATAAA	-11	NA	26911023	26918626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ENSMUSG00000035443.11_20	chr9	+	149	1	ISM	ENSMUSG00000035443.11	ENSMUST00000213683.2	1107	7	7464	4	579	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTGGAAGTGTTTTCTT	NA	False	NA	32	True	AATAAA	-13	NA	26918479	26918628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_26918500_26918600
ENSMUSG00000035451.8_0	chr12	-	3243	2	FSM	ENSMUSG00000035451.8	ENSMUST00000044380.8	3191	2	89	-141	89	141	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACAACTTGAATGTGTA	NA	False	NA	NA	False	AATAAA	-9	NA	57592818	57587272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_57590147_57592449
ENSMUSG00000035455.13_0	chr11	-	2841	3	FSM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	28	92	1	-92	multi-exon	FALSE	canonical	3	411	junction_2	109.5	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTTTGACGGAGTTGCT	NA	False	NA	-13	True	AATAAA	-16	NA	11758931	11750379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_11753064_11756095_11756216_11758894
ENSMUSG00000035455.13_1	chr11	-	1876	1	ISM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	6704	92	-794	-92	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTTTGACGGAGTTGCT	NA	False	NA	-13	True	AATAAA	-16	NA	11752255	11750379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_11750400_11752300
ENSMUSG00000035455.13_2	chr11	-	2851	3	FSM	ENSMUSG00000035455.13	ENSMUST00000171938.2	2974	3	31	92	1	-92	multi-exon	FALSE	canonical	3	61	junction_2	284.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTTTGACGGAGTTGCT	NA	False	NA	-13	True	AATAAA	-16	NA	11758931	11750379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_11753064_11756095_11756216_11758884
ENSMUSG00000035455.13_4	chr11	-	2807	2	ISM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	2741	92	2707	-92	3prime_fragment	FALSE	canonical	3	630	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTTTGACGGAGTTGCT	NA	False	NA	-13	True	AATAAA	-16	NA	11756218	11750379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_11753064_11756095
ENSMUSG00000035455.13_5	chr11	-	2721	2	FSM	ENSMUSG00000035455.13	ENSMUST00000171080.8	2844	2	31	92	1	-92	multi-exon	FALSE	canonical	3	48	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTTTGACGGAGTTGCT	NA	False	NA	-13	True	AATAAA	-16	NA	11758931	11750379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_11753064_11758894
ENSMUSG00000035458.16_1	chr7	-	913	8	FSM	ENSMUSG00000035458.16	ENSMUST00000098859.10	912	8	-5	4	-5	-1	multi-exon	FALSE	canonical	3	16	junction_6	4.77664385637157	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGAACTGTGTGTCTGC	6912	False	NA	-6	True	AATAAA	-13	NA	4525532	4521307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525068_4525082_4525303
ENSMUSG00000035458.16_16	chr7	-	799	7	NIC	ENSMUSG00000035458.16	novel	912	8	NA	NA	-5	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	10.1762250149825	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGAACTGTGTGTCTGC	7013	False	NA	-6	True	AATAAA	-13	NA	4525431	4521307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525303
ENSMUSG00000035458.16_4	chr7	-	2507	11	Fusion	ENSMUSG00000055809.8_ENSMUSG00000035458.16	novel	912	8	NA	NA	-2263	1	intron_retention	FALSE	canonical	3	16	junction_6	5.08035431835222	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAACTGTGTGTCTGCTA	2953	False	NA	-4	True	AATAAA	-15	NA	4529491	4521305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525068_4525082_4525303_4526859_4526936_4527012_4527142_4527255_4529412
ENSMUSG00000035458.16_5	chr7	-	362	3	FSM	ENSMUSG00000035458.16	ENSMUST00000126873.2	451	3	90	-1	90	1	multi-exon	FALSE	canonical	3	24	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAACTGTGTGTCTGCTA	8968	False	NA	-4	True	AATAAA	-15	NA	4523476	4521305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4521451_4522396_4522574_4523436
ENSMUSG00000035458.16_8	chr7	-	967	2	FSM	ENSMUSG00000035458.16	ENSMUST00000132621.2	514	2	-457	4	346	-1	multi-exon	FALSE	canonical	3	24	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGAACTGTGTGTCTGC	9224	False	NA	-6	True	AATAAA	-13	NA	4523220	4521307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4521451_4522396
ENSMUSG00000035469.18_2	chr14	+	3878	12	FSM	ENSMUSG00000035469.18	ENSMUST00000043227.13	3903	12	24	1	10	-1	multi-exon	FALSE	canonical	3	265	junction_1	28.7856139459962	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTGTACAGTTGTGGTT	NA	False	NA	5	True	AATAAA	-15	NA	59438700	59474713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_59439034_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
ENSMUSG00000035469.18_3	chr14	+	3858	12	NIC	ENSMUSG00000035469.18	novel	3903	12	NA	NA	22	0	combination_of_known_splicesites	FALSE	canonical	3	56	junction_1	78.7866666573425	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCACACTTGTACAGTTG	NA	False	NA	0	True	AATAAA	-10	NA	59438712	59474708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_59439034_59447376_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
ENSMUSG00000035469.18_58	chr14	+	1983	1	ISM	ENSMUSG00000035469.18	ENSMUST00000043227.13	3903	12	34049	6	12689	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCACACTTGTACAGTTG	NA	False	NA	0	True	AATAAA	-10	NA	59472725	59474708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_59472700_59474700
ENSMUSG00000035469.18_9	chr14	+	3616	12	NIC	ENSMUSG00000035469.18	novel	3903	12	NA	NA	-2	3	combination_of_known_junctions	FALSE	canonical	2	14	junction_1	90.3297906251319	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACTTGTACAGTTGTGG	NA	False	NA	3	True	AATAAA	-13	NA	59438680	59474711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_59438754_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
ENSMUSG00000035473.11_1	chr17	+	2145	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	168	1	168	-1	multi-exon	FALSE	canonical	3	126	junction_3	8.09149072929224	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATGACTCTTGTTCTTTT	NA	False	NA	10	True	AATAAA	-18	NA	80435067	80492529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
ENSMUSG00000035476.10_0	chrX	+	6357	10	NIC	ENSMUSG00000035476.10	novel	6364	9	NA	NA	-44	-154	combination_of_known_splicesites	FALSE	canonical	3	75	junction_2	16.9297750708808	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTAGATTTCTGTGTATG	NA	False	NA	25	True	ATTAAA	-37	NA	84617583	84677921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_84617772_84619155_84619217_84637257_84637361_84652995_84653191_84657576_84659036_84659979_84660141_84665159_84665254_84667947_84668032_84671765_84671868_84674011
ENSMUSG00000035476.10_1	chrX	+	6513	9	NIC	ENSMUSG00000035476.10	novel	6364	9	NA	NA	-24	-32	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	37.5998670210414	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATTAATAAACTAA	NA	False	NA	NA	False	NA	NA	NA	84617603	84678043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_84617929_84619155_84619217_84652995_84653191_84657576_84659036_84659979_84660141_84665159_84665254_84667947_84668032_84671765_84671868_84674011
ENSMUSG00000035476.10_11	chrX	+	4941	6	ISM	ENSMUSG00000035476.10	ENSMUST00000048250.10	6364	9	40940	32	40812	-32	3prime_fragment	FALSE	canonical	3	98	junction_4	9.15204895091804	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATTAATAAACTAA	NA	False	NA	NA	False	NA	NA	NA	84658567	84678043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_84659036_84659979_84660141_84665159_84665254_84667947_84668032_84671765_84671868_84674011
ENSMUSG00000035476.10_13	chrX	+	2657	1	ISM	ENSMUSG00000035476.10	ENSMUST00000048250.10	6364	9	57633	158	57505	-158	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTCTTAGATTTCTGTG	NA	False	NA	21	True	ATTAAA	-33	NA	84675260	84677917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_84675300_84677900
ENSMUSG00000035476.10_2	chrX	+	6507	10	NIC	ENSMUSG00000035476.10	novel	6364	9	NA	NA	-46	-163	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	31.1840415027373	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCATGTCTCTTAGATTT	NA	False	NA	16	True	ATTAAA	-28	NA	84617581	84677912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_84617929_84619155_84619217_84637257_84637361_84652995_84653191_84657576_84659036_84659979_84660141_84665159_84665254_84667947_84668032_84671765_84671868_84674011
ENSMUSG00000035476.10_3	chrX	+	6302	8	NIC	ENSMUSG00000035476.10	novel	6364	9	NA	NA	-31	-32	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	36.8604649665603	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATTAATAAACTAA	NA	False	NA	NA	False	NA	NA	NA	84617596	84678043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_84617772_84652995_84653191_84657576_84659036_84659979_84660141_84665159_84665254_84667947_84668032_84671765_84671868_84674011
ENSMUSG00000035476.10_4	chrX	+	6240	9	FSM	ENSMUSG00000035476.10	ENSMUST00000048250.10	6364	9	-34	158	-34	-158	multi-exon	FALSE	canonical	3	35	junction_2	26.186828750347	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTCTTAGATTTCTGTG	NA	False	NA	21	True	ATTAAA	-33	NA	84617593	84677917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_84617772_84619155_84619217_84652995_84653191_84657576_84659036_84659979_84660141_84665159_84665254_84667947_84668032_84671765_84671868_84674011
ENSMUSG00000035478.15_1	chr10	-	1546	7	FSM	ENSMUSG00000035478.15	ENSMUST00000092295.10	1662	7	112	4	-16	-4	multi-exon	FALSE	canonical	3	303	junction_6	355.847657791302	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTCTGACTTGTCACTG	NA	False	NA	-8	True	AATAAA	-18	NA	80235272	80228376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
ENSMUSG00000035478.15_13	chr10	-	1534	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105348.8	1222	7	-16	-296	-16	-4	multi-exon	FALSE	canonical	3	94	junction_5	422.225617676406	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTCTGACTTGTCACTG	NA	False	NA	-8	True	AATAAA	-18	NA	80235272	80228376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231120_80231269_80231430_80235051
ENSMUSG00000035478.15_2	chr10	-	1450	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105349.8	1566	7	112	4	-16	-4	multi-exon	FALSE	canonical	3	918	junction_6	141.458376288653	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTCTGACTTGTCACTG	NA	False	NA	-8	True	AATAAA	-18	NA	80235272	80228376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
ENSMUSG00000035478.15_3	chr10	-	1524	6	NIC	ENSMUSG00000035478.15	novel	1566	7	NA	NA	-14	-4	intron_retention	FALSE	canonical	3	918	junction_5	149.282818837266	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTCTGACTTGTCACTG	NA	False	NA	-8	True	AATAAA	-18	NA	80235270	80228376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
ENSMUSG00000035478.15_4	chr10	-	1619	6	NIC	ENSMUSG00000035478.15	novel	1662	7	NA	NA	-13	-4	intron_retention	FALSE	canonical	3	303	junction_5	389.715485963799	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTCTGACTTGTCACTG	NA	False	NA	-8	True	AATAAA	-18	NA	80235269	80228376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
ENSMUSG00000035486.15_0	chr10	+	2063	15	FSM	ENSMUSG00000035486.15	ENSMUST00000105351.2	2100	15	30	7	30	-7	multi-exon	FALSE	canonical	1	5	junction_11	2.25876975726313	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGTGTCTGCTTCCTT	NA	False	NA	7	True	AATAAA	-13	NA	80192322	80201316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80192502_80193817_80193926_80194075_80194193_80194620_80194751_80195075_80195164_80195243_80195340_80195988_80196188_80196273_80196401_80196519_80196597_80196955_80197029_80197237_80197316_80198842_80199000_80199849_80199980_80200056_80200168_80200923
ENSMUSG00000035491.6_0	chrX	+	793	1	NIC	ENSMUSG00000035491.6	novel	835	2	NA	NA	19813	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAAGCGCTTCAGTTGA	NA	False	NA	NA	False	AATAAA	-18	NA	84313097	84313890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_84313100_84313900
ENSMUSG00000035493.11_0	chr13	+	2698	17	FSM	ENSMUSG00000035493.11	ENSMUST00000045173.10	2714	17	-2	18	0	-18	multi-exon	FALSE	canonical	3	51	junction_1	6.48917367620871	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACCAAAGAAACAAACAC	9423	False	NA	NA	False	NA	NA	NA	56757396	56787153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_56757594_56762052_56762152_56771372_56771438_56773012_56773174_56773462_56773628_56773846_56773994_56775726_56775869_56777430_56777644_56778356_56778495_56779042_56779189_56779862_56780000_56780671_56780803_56783378_56783504_56784378_56784482_56784950_56785031_56785833_56785859_56786529
ENSMUSG00000035493.11_6	chr13	+	2502	16	ISM	ENSMUSG00000035493.11	ENSMUST00000045173.10	2714	17	4653	18	4653	-18	3prime_fragment	FALSE	canonical	3	54	junction_3	6.0736223860962	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACCAAAGAAACAAACAC	NA	False	NA	NA	False	NA	NA	NA	56762051	56787153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_56762152_56771372_56771438_56773012_56773174_56773462_56773628_56773846_56773994_56775726_56775869_56777430_56777644_56778356_56778495_56779042_56779189_56779862_56780000_56780671_56780803_56783378_56783504_56784378_56784482_56784950_56785031_56785833_56785859_56786529
ENSMUSG00000035495.16_0	chr4	-	3695	10	FSM	ENSMUSG00000035495.16	ENSMUST00000107772.8	3726	10	28	3	8	-3	multi-exon	FALSE	canonical	3	146	junction_3	21.9291789378647	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGGTGGGAAGAGTGC	-16	True	NA	-6	True	AATAAA	-22	NA	46138447	46114748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
ENSMUSG00000035495.16_1	chr4	-	3685	10	FSM	ENSMUSG00000035495.16	ENSMUST00000107770.2	2700	10	-2	-983	-2	-3	multi-exon	FALSE	canonical	3	38	junction_9	51.5344784502162	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGGTGGGAAGAGTGC	-9	True	NA	-6	True	AATAAA	-22	NA	46138440	46114748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135592_46138379
ENSMUSG00000035495.16_2	chr4	-	1613	1	ISM	ENSMUSG00000035495.16	ENSMUST00000107772.8	3726	10	22114	3	15562	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGGTGGGAAGAGTGC	NA	False	NA	-6	True	AATAAA	-22	NA	46116361	46114748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_46114700_46116400
ENSMUSG00000035495.16_4	chr4	-	3824	10	NIC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	6	-3	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	59.1553719005414	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGGTGGGAAGAGTGC	10	True	NA	-6	True	AATAAA	-22	NA	46138688	46114748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138491
ENSMUSG00000035495.16_7	chr4	-	3610	10	NNC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_3	52.704627669473	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGGTGGGAAGAGTGC	-17	True	NA	-6	True	AATAAA	-22	NA	46138448	46114748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_46117084_46119142_46119282_46119840_46119914_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
ENSMUSG00000035498.11_0	chr9	-	5284	9	FSM	ENSMUSG00000035498.11	ENSMUST00000039229.8	5310	9	19	7	19	-7	multi-exon	FALSE	canonical	2	3	junction_2	1.31695671910659	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAAATGCATGTTCATTT	6350	False	NA	NA	False	AATAAA	-11	NA	123045084	122999895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_123002992_123004799_123004885_123006752_123007119_123009049_123009431_123011229_123011452_123012521_123012891_123014117_123014481_123018985_123019196_123044892
ENSMUSG00000035504.17_0	chr10	+	1928	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	197	2	5	-1	multi-exon	FALSE	canonical	3	489	junction_4	47.9921868641136	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGTGTGTCCGCTAAGC	7224	False	NA	16	True	AATAAA	-17	NA	80165983	80172273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
ENSMUSG00000035504.17_2	chr10	+	2886	4	FSM	ENSMUSG00000035504.17	ENSMUST00000153167.2	848	4	-30	-2008	23	0	multi-exon	FALSE	canonical	3	516	junction_3	38.0029238641216	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGTGTGTCCGCTAAGCT	7242	False	NA	17	True	AATAAA	-18	NA	80166001	80172274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799
ENSMUSG00000035505.15_0	chr5	-	1296	6	FSM	ENSMUSG00000035505.15	ENSMUST00000048363.10	1333	6	33	4	4	-1	multi-exon	FALSE	canonical	3	158	junction_3	53.4714877294432	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGCTCTGGTGAGATAA	NA	False	NA	-8	True	AATAAA	-12	NA	90371827	90362586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_90363035_90365375_90365484_90366770_90366893_90367218_90367383_90370089_90370191_90371474
ENSMUSG00000035505.15_1	chr5	-	4403	1	FSM	ENSMUSG00000035505.15	ENSMUST00000200475.2	1293	1	-3107	-3	662	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCTCTGGTGAGATAAT	NA	False	NA	-7	True	AATAAA	-13	NA	90366988	90362585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_90362600_90367000
ENSMUSG00000035505.15_2	chr5	-	1305	6	FSM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	-2	4	-2	-1	multi-exon	FALSE	canonical	3	156	junction_3	54.1833922895199	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGCTCTGGTGAGATAA	NA	False	NA	-8	True	AATAAA	-12	NA	90371833	90362586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370191_90371474
ENSMUSG00000035505.15_3	chr5	-	1269	6	NIC	ENSMUSG00000035505.15	novel	1307	6	NA	NA	4	1	combination_of_known_junctions	FALSE	canonical	3	63	junction_5	93.5534072067928	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGGCTCTGGTGAGATA	NA	False	NA	-9	True	AATAAA	-11	NA	90371794	90362587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370195_90371474
ENSMUSG00000035505.15_4	chr5	-	1272	6	NIC	ENSMUSG00000035505.15	novel	1333	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_5	93.3016612928194	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCTCTGGTGAGATAAT	NA	False	NA	-7	True	AATAAA	-13	NA	90371798	90362585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_90363035_90365375_90365484_90366770_90366893_90367218_90367383_90370089_90370195_90371474
ENSMUSG00000035506.17_10	chr16	+	2244	11	NIC	ENSMUSG00000035506.17	novel	2656	14	NA	NA	128	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	16.5665325279613	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTATTGTTTTATTTTT	NA	False	NA	2	True	AATAAA	-12	NA	33337825	33483771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33483294
ENSMUSG00000035506.17_13	chr16	+	2333	12	NIC	ENSMUSG00000035506.17	novel	2656	14	NA	NA	137	-5	combination_of_known_junctions	FALSE	canonical	2	6	junction_11	14.4244970693081	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTATTGTTTTATTTTT	NA	False	NA	2	True	AATAAA	-12	NA	33337834	33483771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33483294
ENSMUSG00000035506.17_16	chr16	+	2380	13	NIC	ENSMUSG00000035506.17	novel	2656	14	NA	NA	122	-5	combination_of_known_junctions	FALSE	canonical	3	5	junction_8	17.7080882335979	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTATTGTTTTATTTTT	NA	False	NA	2	True	AATAAA	-12	NA	33337819	33483771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
ENSMUSG00000035506.17_20	chr16	+	2484	13	FSM	ENSMUSG00000035506.17	ENSMUST00000059056.15	3166	13	-52	734	-1	-5	multi-exon	FALSE	canonical	3	33	junction_4	11.0754984838908	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTATTGTTTTATTTTT	NA	False	NA	2	True	AATAAA	-12	NA	33338646	33483771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
ENSMUSG00000035506.17_23	chr16	+	2370	12	NIC	ENSMUSG00000035506.17	novel	3166	13	NA	NA	-1	-5	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	14.1923038159175	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTATTGTTTTATTTTT	NA	False	NA	2	True	AATAAA	-12	NA	33338646	33483771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
ENSMUSG00000035506.17_3	chr16	+	2337	12	NIC	ENSMUSG00000035506.17	novel	2656	14	NA	NA	51	-5	combination_of_known_splicesites	FALSE	canonical	3	5	junction_7	20.1441089146912	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTATTGTTTTATTTTT	NA	False	NA	2	True	AATAAA	-12	NA	33337748	33483771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33426535_33426624_33428514_33428603_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
ENSMUSG00000035506.17_5	chr16	+	2493	13	NIC	ENSMUSG00000035506.17	novel	2656	14	NA	NA	47	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_5	14.3611648397877	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTTTATTTTTTATTA	NA	False	NA	7	True	AATAAA	-17	NA	33337744	33483776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
ENSMUSG00000035506.17_6	chr16	+	2592	14	FSM	ENSMUSG00000035506.17	ENSMUST00000121925.8	2656	14	57	7	57	-5	multi-exon	FALSE	canonical	3	33	junction_5	11.5650974613248	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTATTGTTTTATTTTT	NA	False	NA	2	True	AATAAA	-12	NA	33337754	33483771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
ENSMUSG00000035509.18_1	chr13	+	2196	7	FSM	ENSMUSG00000035509.18	ENSMUST00000045428.7	1965	7	-76	-155	-40	43	multi-exon	FALSE	canonical	1	1	junction_5	3.77123616632825	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATATTTAGCATCTTG	NA	False	NA	NA	False	NA	NA	NA	56670244	56685754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_56670436_56671322_56671417_56673454_56673586_56674727_56675095_56675530_56675654_56680105_56680278_56684636
ENSMUSG00000035509.18_2	chr13	+	907	4	FSM	ENSMUSG00000035509.18	ENSMUST00000124981.2	3507	4	-25	2625	-3	-6	multi-exon	FALSE	canonical	2	8	junction_3	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATTCAGTTTCTCACT	NA	False	NA	NA	False	AATAAA	-20	NA	56670300	56675274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_56670436_56671322_56671417_56673454_56673586_56674727
ENSMUSG00000035517.18_0	chr4	+	3626	17	FSM	ENSMUSG00000035517.18	ENSMUST00000102929.2	3716	17	81	9	81	-9	multi-exon	FALSE	canonical	0	0	junction_9	2.54644359843292	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATAAAACCTGATGTCTT	7	True	NA	NA	False	AATAAA	-10	NA	45972313	46034752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_45972437_45987461_45987675_45989077_45989220_45990049_45990231_45992196_45992271_45994306_45994525_46005116_46005701_46007454_46007642_46010789_46010902_46013065_46013269_46016868_46017004_46018529_46018617_46020804_46020940_46023394_46023506_46025656_46026160_46029646_46029808_46034295
ENSMUSG00000035521.14_0	chr17	-	1143	11	FSM	ENSMUSG00000035521.14	ENSMUST00000038973.7	1234	11	-9	100	-1	-100	multi-exon	FALSE	canonical	3	143	junction_3	15.4275727189989	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACTGATAAAAAATAACTC	NA	False	NA	-15	True	AATAAA	-24	NA	25459099	25453390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
ENSMUSG00000035521.14_13	chr17	-	1327	10	NIC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	1	16	intron_retention	FALSE	canonical	3	143	junction_5	13.752665286014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAATATGACCATCTGGG	NA	False	NA	NA	False	AGTAAA	-12	NA	25459097	25453274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_25453697_25453781_25453864_25453953_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
ENSMUSG00000035529.11_0	chr10	-	3910	12	FSM	ENSMUSG00000035529.11	ENSMUST00000037646.9	3877	12	-37	4	23	-4	multi-exon	FALSE	canonical	3	181	junction_11	19.4396714593195	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAATATGGAATTTGT	NA	False	NA	NA	False	ATTAAA	-10	NA	85752827	85727837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740114_85741212_85741363_85743139_85743935_85746086_85746273_85748701_85748836_85752387_85752594_85752671
ENSMUSG00000035529.11_11	chr10	-	3835	12	NIC	ENSMUSG00000035529.11	novel	3877	12	NA	NA	-67	-2	combination_of_known_junctions	FALSE	canonical	2	8	junction_11	62.8899077425605	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATATGGAATTTGTCA	NA	False	NA	NA	False	ATTAAA	-12	NA	85752917	85727835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740114_85741212_85741363_85743139_85743935_85746086_85746273_85748701_85748836_85752387_85752594_85752838
ENSMUSG00000035529.11_14	chr10	-	2781	8	ISM	ENSMUSG00000035529.11	ENSMUST00000037646.9	3877	12	9307	0	-121	0	3prime_fragment	FALSE	canonical	3	192	junction_3	18.461211404743	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATGGAATTTGTCATG	NA	False	NA	NA	False	ATTAAA	-14	NA	85743483	85727833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740114_85741212_85741363_85743139
ENSMUSG00000035529.11_2	chr10	-	3930	12	FSM	ENSMUSG00000035529.11	ENSMUST00000220032.2	3962	12	24	8	24	-4	multi-exon	FALSE	canonical	3	39	junction_6	54.6866354713247	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAATATGGAATTTGT	NA	False	NA	NA	False	ATTAAA	-10	NA	85752826	85727837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740135_85741212_85741363_85743139_85743935_85746086_85746273_85748701_85748836_85752387_85752594_85752671
ENSMUSG00000035529.11_29	chr10	-	3806	11	ISM	ENSMUSG00000035529.11	ENSMUST00000037646.9	3877	12	145	4	-125	-4	3prime_fragment	FALSE	canonical	3	192	junction_3	16.7403703662733	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAATATGGAATTTGT	NA	False	NA	NA	False	ATTAAA	-10	NA	85752645	85727837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740114_85741212_85741363_85743139_85743935_85746086_85746273_85748701_85748836_85752387
ENSMUSG00000035530.14_0	chr11	+	658	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	102	562	102	1	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	3681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTAGTCTTGAAGTC	4059	False	NA	0	True	AATAAA	-14	NA	100210812	100212360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
ENSMUSG00000035530.14_3	chr11	+	2103	1	NIC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	103	-6	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACGCCTGATGTCCAGA	4060	False	NA	15	True	AATAAA	-11	NA	100210813	100212916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_100210800_100212900
ENSMUSG00000035530.14_4	chr11	+	581	3	FSM	ENSMUSG00000035530.14	ENSMUST00000139846.2	447	3	59	-193	59	9	multi-exon	FALSE	canonical	3	12221	junction_1	273.5	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGAAGTCCCTCATTT	4649	False	NA	8	True	AATAAA	-22	NA	100211402	100212368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_100211656_100211773_100211876_100212142
ENSMUSG00000035545.14_0	chr7	+	3629	16	NIC	ENSMUSG00000035545.14	novel	3620	16	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	173	junction_15	69.6971225294767	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACCTGTTTCTGCTTGGC	93	False	NA	12	True	ATTAAA	-12	NA	4140048	4151168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
ENSMUSG00000035545.14_1	chr7	+	5074	15	NIC	ENSMUSG00000035545.14	novel	5105	15	NA	NA	4	-3	intron_retention	FALSE	canonical	3	127	junction_1	77.0351099386851	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACCTGTTTCTGCTTGGC	86	False	NA	12	True	ATTAAA	-12	NA	4140041	4151168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_4140122_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
ENSMUSG00000035545.14_124	chr7	+	3912	7	ISM	ENSMUSG00000035545.14	ENSMUST00000121270.8	3620	16	6354	1	1261	-1	intron_retention	FALSE	canonical	3	334	junction_1	31.3616892969042	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCTGTTTCTGCTTGGCCT	4319	False	NA	14	True	ATTAAA	-14	NA	4146418	4151170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
ENSMUSG00000035545.14_14	chr7	+	5479	14	NIC	ENSMUSG00000035545.14	novel	5105	15	NA	NA	1	-1	intron_retention	FALSE	canonical	3	249	junction_1	49.7978160686501	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCTGTTTCTGCTTGGCCT	93	False	NA	14	True	ATTAAA	-14	NA	4140048	4151170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
ENSMUSG00000035545.14_142	chr7	+	1708	1	ISM	ENSMUSG00000035545.14	ENSMUST00000037472.13	5105	15	9415	6	1744	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCTGTTTCTGCTTGGCCT	123	False	NA	14	True	ATTAAA	-14	NA	4149462	4151170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_4149500_4151200
ENSMUSG00000035545.14_5	chr7	+	5093	15	FSM	ENSMUSG00000035545.14	ENSMUST00000037472.13	5105	15	5	7	5	-2	multi-exon	FALSE	canonical	3	216	junction_8	58.4889663412978	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCTGTTTCTGCTTGGCC	97	False	NA	13	True	ATTAAA	-13	NA	4140052	4151169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
ENSMUSG00000035545.14_6	chr7	+	5457	14	NIC	ENSMUSG00000035545.14	novel	5105	15	NA	NA	2	-3	intron_retention	FALSE	canonical	3	127	junction_1	73.1737819636508	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACCTGTTTCTGCTTGGC	84	False	NA	12	True	ATTAAA	-12	NA	4140039	4151168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_4140122_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
ENSMUSG00000035545.14_7	chr7	+	3604	16	NIC	ENSMUSG00000035545.14	novel	3620	16	NA	NA	-3	-3	combination_of_known_junctions	FALSE	canonical	3	127	junction_1	83.8505548911607	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACCTGTTTCTGCTTGGC	89	False	NA	12	True	ATTAAA	-12	NA	4140044	4151168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_4140122_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
ENSMUSG00000035547.15_0	chr7	-	3423	8	ISM	ENSMUSG00000035547.15	ENSMUST00000107112.2	2232	13	30581	-2095	30449	-7	3prime_fragment	FALSE	canonical	3	144	junction_6	14.4165437846204	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGGATCTGTCTGTTTCA	NA	False	NA	-6	True	AATAAA	-16	NA	97780968	97770772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_97773263_97774448_97774586_97775035_97775152_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882
ENSMUSG00000035547.15_10	chr7	-	3656	9	ISM	ENSMUSG00000035547.15	ENSMUST00000107112.2	2232	13	29385	-2095	29253	-7	3prime_fragment	FALSE	canonical	3	144	junction_6	14.3853223808158	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGGATCTGTCTGTTTCA	NA	False	NA	-6	True	AATAAA	-16	NA	97782164	97770772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_97773263_97774448_97774586_97775035_97775152_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039
ENSMUSG00000035547.15_11	chr7	-	1439	1	ISM	ENSMUSG00000035547.15	ENSMUST00000040971.14	4498	13	55270	7	39206	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGGATCTGTCTGTTTCA	NA	False	NA	-6	True	AATAAA	-16	NA	97772211	97770772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_97770800_97772200
ENSMUSG00000035547.15_2	chr7	-	4413	13	FSM	ENSMUSG00000035547.15	ENSMUST00000040971.14	4498	13	77	8	77	-8	multi-exon	FALSE	canonical	3	136	junction_9	14.761765552339	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGGATCTGTCTGTTTC	NA	False	NA	-7	True	AATAAA	-15	NA	97827404	97770773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_97773263_97774448_97774586_97775035_97775152_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039_97782233_97784966_97785176_97801018_97801151_97811122_97811318_97827250
ENSMUSG00000035551.7_0	chr4	-	2771	5	FSM	ENSMUSG00000035551.7	ENSMUST00000044297.7	2864	5	71	22	71	-22	multi-exon	FALSE	canonical	1	2	junction_1	1.73205080756888	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCCAAAAACAAACAAACAA	5	True	NA	NA	False	NA	NA	NA	45826852	45809489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_45811381_45813392_45813551_45815471_45815589_45816277_45816388_45826357
ENSMUSG00000035557.10_0	chr11	-	1498	8	FSM	ENSMUSG00000035557.10	ENSMUST00000080893.7	1551	8	0	53	0	-53	multi-exon	FALSE	canonical	3	34	junction_4	2.1946130708196	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGAACTGTGGCCTTTGT	NA	False	NA	-5	True	ATTAAA	-14	NA	100151855	100147095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100147323_100148145_100148172_100148258_100148480_100148568_100148695_100149234_100149397_100149998_100150156_100150520_100150604_100151359
ENSMUSG00000035559.10_1	chr8	-	966	5	FSM	ENSMUSG00000035559.10	ENSMUST00000038626.10	980	5	12	2	12	-2	multi-exon	FALSE	canonical	3	649	junction_3	27.2304976083802	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGACTGCGTGTGGGTGGG	NA	False	NA	-4	True	ATTAAA	-15	NA	71213580	71211296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71211671_71211754_71211884_71212036_71212114_71213013_71213185_71213365
ENSMUSG00000035559.10_7	chr8	-	1002	5	NNC	ENSMUSG00000035559.10	novel	980	5	NA	NA	17	-2	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_3	276.99311814556	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGACTGCGTGTGGGTGGG	NA	False	NA	-4	True	ATTAAA	-15	NA	71213575	71211296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_71211671_71211754_71211884_71212036_71212155_71213013_71213185_71213365
ENSMUSG00000035560.6_0	chr12	+	1994	2	FSM	ENSMUSG00000035560.6	ENSMUST00000046331.5	2228	2	232	2	28	-2	multi-exon	FALSE	canonical	3	6	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTGATGACCTCTTTGTT	NA	False	NA	NA	False	AATAAA	-17	NA	65272522	65275226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_65274272_65274981
ENSMUSG00000035561.6_0	chr4	+	2222	2	FSM	ENSMUSG00000035561.6	ENSMUST00000044384.5	2298	2	73	3	-26	-3	multi-exon	FALSE	canonical	3	42	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGTATCACTGTTTTC	-10	True	NA	9	True	ATTAAA	-23	NA	45799094	45804601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_45799170_45802454
ENSMUSG00000035561.6_2	chr4	+	1655	1	ISM	ENSMUSG00000035561.6	ENSMUST00000044384.5	2298	2	3925	3	3826	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGTATCACTGTTTTC	3842	False	NA	9	True	ATTAAA	-23	NA	45802946	45804601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_45802900_45804600
ENSMUSG00000035569.18_2	chr8	-	4636	5	ISM	ENSMUSG00000035569.18	ENSMUST00000098333.5	7995	13	23052	-817	6845	488	3prime_fragment	FALSE	canonical	3	382	junction_1	9.9373034571759	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTACATGGCACTGTC	NA	False	NA	NA	False	NA	NA	NA	123619674	123610072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123611076_123612388_123612482_123614052_123614197_123614266_123614366_123616377
ENSMUSG00000035569.18_3	chr8	-	9183	13	FSM	ENSMUSG00000035569.18	ENSMUST00000098334.13	8455	13	-243	-485	14	485	multi-exon	FALSE	canonical	3	162	junction_12	93.1657349386923	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTTTGTACATGGCACT	NA	False	NA	NA	False	NA	NA	NA	123769002	123610075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_123611076_123612388_123612482_123614052_123614197_123614266_123614366_123616377_123622896_123623298_123623447_123625312_123625456_123626342_123626547_123626717_123626889_123635406_123635546_123642639_123642785_123701467_123701532_123768687
ENSMUSG00000035569.18_4	chr8	-	9281	14	NIC	ENSMUSG00000035569.18	novel	8481	13	NA	NA	15	487	intron_retention	TRUE	canonical	3	57	junction_10	113.267448072689	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGTACATGGCACTGT	NA	False	NA	NA	False	NA	NA	NA	123769001	123610073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_123611076_123612388_123612482_123614052_123614197_123614266_123614366_123616377_123622896_123623298_123623447_123625312_123625456_123626342_123626547_123626717_123626889_123627340_123627438_123635406_123635546_123642639_123642785_123701467_123701532_123768687
ENSMUSG00000035569.18_57	chr8	-	2821	8	NIC	ENSMUSG00000035569.18	novel	8481	13	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_4	74.1537289028953	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTGGTCTTTGTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	123768991	123623758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_123625456_123626342_123626547_123626717_123626889_123627340_123627438_123635406_123635546_123642639_123642785_123701467_123701532_123768687
ENSMUSG00000035569.18_58	chr8	-	2729	7	ISM	ENSMUSG00000035569.18	ENSMUST00000098334.13	8455	13	-237	13198	20	0	5prime_fragment	FALSE	canonical	3	162	junction_6	36.6409000374657	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTGGTCTTTGTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	123768996	123623758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123625456_123626342_123626547_123626717_123626889_123635406_123635546_123642639_123642785_123701467_123701532_123768687
ENSMUSG00000035569.18_64	chr8	-	5867	4	ISM	ENSMUSG00000035569.18	ENSMUST00000098334.13	8455	13	-234	19633	23	2608	5prime_fragment	FALSE	canonical	3	162	junction_3	28.1937739383873	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123768993	123630193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_123635546_123642639_123642785_123701467_123701532_123768687
ENSMUSG00000035572.17_0	chr4	+	2200	7	FSM	ENSMUSG00000035572.17	ENSMUST00000155551.8	7250	7	1	5049	1	-246	multi-exon	FALSE	canonical	3	56	junction_4	12.6315302143309	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTGGTGATTGAAAAAGT	3	True	NA	9	True	AATAAA	-22	NA	45342101	45374710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_45342728_45348105_45348220_45359760_45359959_45370305_45370509_45372663_45372775_45372923_45373070_45373908
ENSMUSG00000035572.17_2	chr4	+	4752	6	NIC	ENSMUSG00000035572.17	novel	7250	7	NA	NA	1	1793	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	28.039971469315	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATATTATGTGAT	3	True	NA	NA	False	AATAAA	-27	NA	45342101	45377460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_45342728_45348105_45348220_45370305_45370509_45372663_45372775_45372923_45373070_45373908
ENSMUSG00000035572.17_6	chr4	+	2488	8	FSM	ENSMUSG00000035572.17	ENSMUST00000107798.4	2421	8	-84	17	-3	-17	multi-exon	FALSE	canonical	3	9	junction_3	29.3250606763817	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATTTAAGATCTCCAGC	-1	True	NA	NA	False	NA	NA	NA	45342097	45374939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_45342728_45348105_45348220_45349536_45349592_45359760_45359959_45370305_45370509_45372663_45372775_45372923_45373070_45373908
ENSMUSG00000035572.17_8	chr4	+	4045	1	ISM	ENSMUSG00000035572.17	ENSMUST00000155551.8	7250	7	33575	39	5330	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAACCTTCACTACGTGT	NA	False	NA	11	True	NA	NA	NA	45375675	45379720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_45375700_45379700
ENSMUSG00000035575.12_1	chr11	-	3029	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	1	847	1	-847	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGGGTATTTGTTTGTT	NA	False	NA	-9	True	AATAAA	-18	NA	79853215	79825625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
ENSMUSG00000035575.12_2	chr11	-	1099	1	ISM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	27328	11	7202	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACAACTCATTGAGA	NA	False	NA	-25	True	NA	NA	NA	79825888	79824789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_79824800_79825900
ENSMUSG00000035578.17_0	chr16	-	1255	8	NNC	ENSMUSG00000035578.17	novel	5618	11	NA	NA	6403	-9	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_7	7.43406390357582	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGAATTCTCACCTAG	6123	False	NA	-7	True	ATTAAA	-20	NA	32863837	32836998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32863699
ENSMUSG00000035578.17_2	chr16	-	1662	11	FSM	ENSMUSG00000035578.17	ENSMUST00000115100.9	5618	11	6	3950	1	-13	multi-exon	FALSE	canonical	2	4	junction_9	25.6242073048124	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAAAAGTGAATTCTCAC	1178	False	NA	-11	True	ATTAAA	-16	NA	32876554	32837002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32865889_32866072_32870221_32870484_32873993_32874065_32876520
ENSMUSG00000035578.17_6	chr16	-	2596	9	ISM	ENSMUSG00000035578.17	ENSMUST00000115100.9	5618	11	6249	2739	-71	1198	3prime_fragment	TRUE	canonical	3	14	junction_7	20.3838171106395	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCATCTCACTGCAATGA	7421	False	NA	NA	False	AATAAA	-10	NA	32870311	32835791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32865889_32866072_32870221
ENSMUSG00000035585.17_13	chr7	+	1366	5	NIC	ENSMUSG00000035585.17	novel	1319	4	NA	NA	108	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	468.595241119668	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2347	False	NA	-2	True	AATAAA	-8	NA	3696935	3704003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_3697058_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035585.17_26	chr7	+	1290	4	FSM	ENSMUSG00000035585.17	ENSMUST00000108627.4	1319	4	29	0	29	0	multi-exon	FALSE	canonical	3	1035	junction_3	83.107694522763	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2962	False	NA	-2	True	AATAAA	-8	NA	3697550	3704003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035585.17_27	chr7	+	1412	5	ISM	ENSMUSG00000035585.17	ENSMUST00000205287.2	1375	6	788	-117	28	0	3prime_fragment	FALSE	canonical	3	59	junction_4	570.385998688607	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2961	False	NA	-2	True	AATAAA	-8	NA	3697549	3704003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_3697844_3697976_3698227_3698350_3698621_3698711_3698833_3703526
ENSMUSG00000035585.17_4	chr7	+	1389	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108630.8	1779	5	370	20	-18	0	multi-exon	FALSE	canonical	3	289	junction_1	380.27448967818	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2155	False	NA	-2	True	AATAAA	-8	NA	3696743	3704003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035585.17_5	chr7	+	1349	5	NIC	ENSMUSG00000035585.17	novel	1319	4	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	477.15458710988	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2720	False	NA	-2	True	AATAAA	-8	NA	3697308	3704003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_3697414_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035585.17_6	chr7	+	1370	5	NIC	ENSMUSG00000035585.17	novel	1779	5	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	477.15458710988	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2150	False	NA	-2	True	AATAAA	-8	NA	3696738	3704003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_3696865_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035594.11_0	chr9	+	1913	6	FSM	ENSMUSG00000035594.11	ENSMUST00000213960.2	1737	6	-84	-92	-17	-1	multi-exon	FALSE	canonical	1	1	junction_4	1.2	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTCTTGTTAAATT	NA	False	NA	NA	False	AGTAAA	-30	NA	54888732	54914201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_54889006_54905295_54905448_54907735_54907781_54909683_54909794_54911614_54912444_54913697
ENSMUSG00000035594.11_2	chr9	+	605	3	ISM	ENSMUSG00000035594.11	ENSMUST00000213960.2	1737	6	-84	6194	-17	2550	5prime_fragment	FALSE	canonical	1	3	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTACTCATTGTGCATGT	NA	False	NA	NA	False	AATAAA	-12	NA	54888732	54907915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_54889006_54905295_54905448_54907735
ENSMUSG00000035595.7_0	chr10	+	1397	2	ISM	ENSMUSG00000035595.7	ENSMUST00000041882.7	678	3	283	32	283	-32	3prime_fragment	FALSE	canonical	3	59	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTATCTGAGACCTCCCC	NA	False	NA	11	True	AATAAA	-17	NA	80009060	80010948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80010160_80010650
ENSMUSG00000035595.7_1	chr10	+	645	3	FSM	ENSMUSG00000035595.7	ENSMUST00000041882.7	678	3	1	32	1	-32	multi-exon	FALSE	canonical	3	33	junction_1	13	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTATCTGAGACCTCCCC	NA	False	NA	11	True	AATAAA	-17	NA	80008778	80010948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80009009_80010042_80010160_80010650
ENSMUSG00000035595.7_2	chr10	+	241	1	ISM	ENSMUSG00000035595.7	ENSMUST00000041882.7	678	3	1930	32	1930	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTATCTGAGACCTCCCC	NA	False	NA	11	True	AATAAA	-17	NA	80010707	80010948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80010700_80010900
ENSMUSG00000035596.15_0	chr7	-	2312	8	FSM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	562	4	1	0	multi-exon	FALSE	canonical	3	178	junction_4	25.6960252623964	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGTTTGTGAGTATA	7955	False	NA	-6	True	AATAAA	-11	NA	3695960	3680791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_3681849_3686807_3686985_3688672_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
ENSMUSG00000035596.15_1	chr7	-	3998	7	NIC	ENSMUSG00000035596.15	novel	2878	8	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	178	junction_3	25.2762514801718	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTTTGTGAGTATAAC	7959	False	NA	-4	True	AATAAA	-13	NA	3695956	3680789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_3681849_3686807_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
ENSMUSG00000035596.15_18	chr7	-	3385	6	NIC	ENSMUSG00000035596.15	novel	2878	8	NA	NA	3	-7	intron_retention	FALSE	canonical	3	178	junction_2	26.8670802284134	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTCAGCTGCCTTCCTG	7957	False	NA	NA	False	NA	NA	NA	3695958	3686363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
ENSMUSG00000035596.15_3	chr7	-	1513	3	ISM	ENSMUSG00000035596.15	ENSMUST00000127106.8	1964	6	6167	-1	-1423	1	3prime_fragment	FALSE	canonical	3	185	junction_2	22	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGTTTGTGAGTATAA	4616	False	NA	-5	True	AATAAA	-12	NA	3688950	3680790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_3681849_3686807_3686985_3688672
ENSMUSG00000035597.20_0	chr12	+	2832	14	FSM	ENSMUSG00000035597.20	ENSMUST00000120580.8	4069	14	6	1231	5	0	multi-exon	FALSE	canonical	3	174	junction_3	84.525476709793	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7513	False	NA	19	True	AATAAA	-16	NA	65083112	65108929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_65083243_65089234_65089582_65090005_65090132_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ENSMUSG00000035597.20_1	chr12	+	3799	12	NIC	ENSMUSG00000035597.20	novel	3457	15	NA	NA	3	0	intron_retention	FALSE	canonical	3	251	junction_3	66.9768678458935	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7511	False	NA	19	True	AATAAA	-16	NA	65083110	65108929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_65083243_65089234_65089582_65090005_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ENSMUSG00000035597.20_16	chr12	+	2928	15	NIC	ENSMUSG00000035597.20	novel	3457	15	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_9	116.631658984819	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7517	False	NA	19	True	AATAAA	-16	NA	65083116	65108929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_65083243_65089234_65089582_65090005_65090132_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102207_65102308_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ENSMUSG00000035597.20_2	chr12	+	3482	13	NIC	ENSMUSG00000035597.20	novel	3457	15	NA	NA	3	0	intron_retention	FALSE	canonical	3	251	junction_3	70.8601909866652	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7511	False	NA	19	True	AATAAA	-16	NA	65083110	65108929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_65083243_65089234_65089582_65090005_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ENSMUSG00000035597.20_20	chr12	+	3166	17	NIC	ENSMUSG00000035597.20	novel	4314	17	NA	NA	3	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_4	147.664950140512	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7511	False	NA	19	True	AATAAA	-16	NA	65083110	65108929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_65083243_65089234_65089582_65090005_65090132_65090316_65090386_65090488_65090652_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102207_65102308_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ENSMUSG00000035597.20_22	chr12	+	3066	16	NIC	ENSMUSG00000035597.20	novel	4314	17	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	137.107192452556	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7511	False	NA	19	True	AATAAA	-16	NA	65083110	65108929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_65083243_65089234_65089582_65090005_65090132_65090316_65090386_65090488_65090652_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ENSMUSG00000035597.20_4	chr12	+	3454	15	FSM	ENSMUSG00000035597.20	ENSMUST00000220798.2	3457	15	3	0	3	0	multi-exon	FALSE	canonical	3	88	junction_9	125.885678620058	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7511	False	NA	19	True	AATAAA	-16	NA	65083110	65108929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_65083243_65089234_65089582_65090005_65090652_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102207_65102308_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ENSMUSG00000035597.20_5	chr12	+	3267	16	NIC	ENSMUSG00000035597.20	novel	3457	15	NA	NA	5	0	intron_retention	FALSE	canonical	3	68	junction_3	136.140842104377	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7513	False	NA	19	True	AATAAA	-16	NA	65083112	65108929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_65083243_65089234_65089582_65090005_65090132_65090316_65090652_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102207_65102308_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ENSMUSG00000035597.20_7	chr12	+	3580	14	NIC	ENSMUSG00000035597.20	novel	3457	15	NA	NA	5	0	intron_retention	FALSE	canonical	3	88	junction_8	113.573842725688	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7513	False	NA	19	True	AATAAA	-16	NA	65083112	65108929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_65083243_65089234_65089582_65090005_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102207_65102308_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
ENSMUSG00000035601.10_0	chr4	+	1333	9	FSM	ENSMUSG00000035601.10	ENSMUST00000044673.9	2064	9	32	699	4	290	multi-exon	FALSE	canonical	3	203	junction_1	41.8103979292233	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGATTGTCTGAACTTTT	-4	True	NA	3	True	TTTAAA	-8	NA	45297158	45315432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_45297196_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
ENSMUSG00000035601.10_11	chr4	+	1433	9	NIC	ENSMUSG00000035601.10	novel	2064	9	NA	NA	5	344	combination_of_known_junctions	FALSE	canonical	3	11	junction_6	97.061755470422	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGCCGATTTCCACCA	-3	True	NA	9	True	CATAAA	-18	NA	45297159	45315486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_45297196_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308449_45308565_45314282_45314407_45315011
ENSMUSG00000035601.10_12	chr4	+	1935	8	NIC	ENSMUSG00000035601.10	novel	2064	9	NA	NA	16	296	intron_retention	FALSE	canonical	3	203	junction_1	44.634113429446	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTGAACTTTTCATTTA	8	True	NA	9	True	TTTAAA	-14	NA	45297170	45315438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_45297196_45300416_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
ENSMUSG00000035601.10_14	chr4	+	1243	8	ISM	ENSMUSG00000035601.10	ENSMUST00000044673.9	2064	9	3288	754	1	235	3prime_fragment	FALSE	canonical	3	233	junction_5	34.2332932588575	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCATGCTTTGTACATTC	3252	False	NA	2	True	AATACA	-17	NA	45300414	45315377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
ENSMUSG00000035614.12_13	chr12	+	3822	17	ISM	ENSMUSG00000035614.12	ENSMUST00000066296.9	6372	20	14811	1	1	1	3prime_fragment	FALSE	canonical	3	16	junction_11	29.4682032027743	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTGTGACAGGTGTCCT	5561	False	NA	8	True	AATAAA	-16	NA	65027388	65069346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_65027654_65029219_65029483_65030101_65030341_65033166_65033265_65039318_65039415_65042279_65042456_65043665_65043820_65049381_65049536_65053092_65053199_65053648_65053885_65055323_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
ENSMUSG00000035614.12_16	chr12	+	2784	12	ISM	ENSMUSG00000035614.12	ENSMUST00000223166.2	6386	21	29643	1	8062	1	3prime_fragment	FALSE	canonical	3	16	junction_6	5.91258637873058	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTGTGACAGGTGTCCT	2619	False	NA	8	True	AATAAA	-16	NA	65042356	65069346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_65042456_65043665_65043820_65049381_65049536_65053092_65053199_65053648_65053885_65055323_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
ENSMUSG00000035614.12_17	chr12	+	1978	7	ISM	ENSMUSG00000035614.12	ENSMUST00000223166.2	6386	21	42666	2	-11352	0	3prime_fragment	FALSE	canonical	3	16	junction_1	6.59334681495083	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGTGTGACAGGTGTCC	6186	False	NA	7	True	AATAAA	-15	NA	65055379	65069345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
ENSMUSG00000035614.12_19	chr12	+	3649	17	ISM	ENSMUSG00000035614.12	ENSMUST00000223166.2	6386	21	16564	1	-1816	1	3prime_fragment	FALSE	canonical	2	3	junction_4	24.6334852132215	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTGTGACAGGTGTCCT	7450	False	NA	8	True	AATAAA	-16	NA	65029277	65069346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_65029483_65030101_65030341_65033166_65033265_65037714_65037865_65039318_65039415_65042279_65042456_65043665_65043820_65049381_65049536_65053092_65053199_65053648_65053885_65055323_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
ENSMUSG00000035614.12_20	chr12	+	3470	16	ISM	ENSMUSG00000035614.12	ENSMUST00000066296.9	6372	20	16726	4	-1790	-2	3prime_fragment	FALSE	canonical	3	16	junction_10	24.0379329856421	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGATGTGTGACAGGTGT	7476	False	NA	5	True	AATAAA	-13	NA	65029303	65069343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_65029483_65030101_65030341_65033166_65033265_65039318_65039415_65042279_65042456_65043665_65043820_65049381_65049536_65053092_65053199_65053648_65053885_65055323_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
ENSMUSG00000035614.12_21	chr12	+	1680	5	ISM	ENSMUSG00000035614.12	ENSMUST00000223166.2	6386	21	46962	3	-7056	-1	3prime_fragment	FALSE	canonical	3	23	junction_3	5.11737237261468	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGATGTGTGACAGGTGTC	NA	False	NA	6	True	AATAAA	-14	NA	65059675	65069344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
ENSMUSG00000035614.12_3	chr12	+	6539	21	FSM	ENSMUSG00000035614.12	ENSMUST00000223166.2	6386	21	-155	2	-19	0	multi-exon	FALSE	canonical	2	3	junction_8	35.8941499411812	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGTGTGACAGGTGTCC	NA	False	NA	7	True	AATAAA	-15	NA	65012558	65069345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_65014803_65023468_65023626_65024942_65025078_65027356_65027654_65029219_65029483_65030101_65030341_65033166_65033265_65037714_65037865_65039318_65039415_65042279_65042456_65043665_65043820_65049381_65049536_65053092_65053199_65053648_65053885_65055323_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
ENSMUSG00000035614.12_4	chr12	+	6389	20	FSM	ENSMUSG00000035614.12	ENSMUST00000066296.9	6372	20	-18	1	-18	1	multi-exon	FALSE	canonical	3	16	junction_14	35.155846142648	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTGTGACAGGTGTCCT	NA	False	NA	8	True	AATAAA	-16	NA	65012559	65069346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_65014803_65023468_65023626_65024942_65025078_65027356_65027654_65029219_65029483_65030101_65030341_65033166_65033265_65039318_65039415_65042279_65042456_65043665_65043820_65049381_65049536_65053092_65053199_65053648_65053885_65055323_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
ENSMUSG00000035614.12_7	chr12	+	3190	6	ISM	ENSMUSG00000035614.12	ENSMUST00000066296.9	6372	20	-21	39154	-21	962	5prime_fragment	FALSE	canonical	3	80	junction_1	12.57616793781	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACTCTGCCATGAAGCTTG	NA	False	NA	NA	False	NA	NA	NA	65012556	65030193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_65014803_65023468_65023626_65024942_65025078_65027356_65027654_65029219_65029483_65030101
ENSMUSG00000035620.16_0	chr10	+	2957	9	FSM	ENSMUSG00000035620.16	ENSMUST00000095385.5	2909	9	-54	6	-14	-6	multi-exon	FALSE	canonical	3	55	junction_2	11.5325625946708	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTAGCCATCTGTGTGTG	NA	False	NA	16	True	AATAAA	-17	NA	84753465	84852305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_84753690_84761409_84761458_84783275_84783885_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84850939
ENSMUSG00000035620.16_1	chr10	+	3066	10	FSM	ENSMUSG00000035620.16	ENSMUST00000038523.15	3069	10	2	1	2	-1	multi-exon	FALSE	canonical	3	6	junction_9	27.2890336586822	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCATCTGTGTGTGTGTTT	NA	False	NA	21	True	AATAAA	-22	NA	84753481	84852310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_84753690_84761409_84761458_84783275_84783885_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84837645_84837766_84850939
ENSMUSG00000035620.16_14	chr10	+	534	1	ISM	ENSMUSG00000035620.16	ENSMUST00000038523.15	3069	10	98297	1	7197	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCATCTGTGTGTGTGTTT	NA	False	NA	21	True	AATAAA	-22	NA	84851776	84852310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_84851800_84852300
ENSMUSG00000035620.16_20	chr10	+	2427	7	ISM	ENSMUSG00000035620.16	ENSMUST00000217175.2	2512	8	10277	-232	10277	-6	3prime_fragment	FALSE	canonical	3	61	junction_1	11.7674220720692	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTAGCCATCTGTGTGTG	NA	False	NA	16	True	AATAAA	-17	NA	84783533	84852305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_84783885_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84850939
ENSMUSG00000035620.16_8	chr10	+	2526	8	NIC	ENSMUSG00000035620.16	novel	2909	9	NA	NA	-192	-6	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	26.1362208594955	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTAGCCATCTGTGTGTG	NA	False	NA	16	True	AATAAA	-17	NA	84753287	84852305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_84753690_84761409_84761458_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84850939
ENSMUSG00000035621.14_1	chr10	+	3592	8	FSM	ENSMUSG00000035621.14	ENSMUST00000099492.10	3597	8	0	5	0	-5	multi-exon	FALSE	canonical	3	9	junction_7	4.49943307086389	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGACCTCTTGCCCCTGG	NA	False	NA	19	True	AATAAA	-11	NA	79984105	79994196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79984184_79985515_79986148_79987211_79987300_79987494_79987558_79989649_79989968_79990164_79990307_79990967_79991241_79992198
ENSMUSG00000035621.14_11	chr10	+	836	1	ISM	ENSMUSG00000035621.14	ENSMUST00000099492.10	3597	8	9257	3	6291	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGACCTCTTGCCCCTGGCT	1784	False	NA	21	True	AATAAA	-13	NA	79993362	79994198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79993400_79994200
ENSMUSG00000035621.14_2	chr10	+	3152	9	FSM	ENSMUSG00000035621.14	ENSMUST00000042057.12	3727	9	2	573	2	-572	multi-exon	FALSE	canonical	3	9	junction_8	4.11551940828858	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGTTGTCTAGACTCCA	NA	False	NA	NA	False	GATAAA	-29	NA	79984107	79993629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79984184_79985515_79986148_79987211_79987300_79987494_79987558_79989424_79989554_79989649_79989968_79990164_79990307_79990967_79991241_79992198
ENSMUSG00000035621.14_4	chr10	+	2959	7	ISM	ENSMUSG00000035621.14	ENSMUST00000099492.10	3597	8	1398	572	-216	-572	3prime_fragment	FALSE	canonical	3	9	junction_6	4.59770474137791	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGTTGTCTAGACTCCA	846	False	NA	NA	False	GATAAA	-29	NA	79985503	79993629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79986148_79987211_79987300_79987494_79987558_79989649_79989968_79990164_79990307_79990967_79991241_79992198
ENSMUSG00000035621.14_6	chr10	+	3325	8	ISM	ENSMUSG00000035621.14	ENSMUST00000042057.12	3727	9	1728	6	114	-5	3prime_fragment	FALSE	canonical	3	9	junction_7	4.13052351280027	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGACCTCTTGCCCCTGG	1176	False	NA	19	True	AATAAA	-11	NA	79985833	79994196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79986148_79987211_79987300_79987494_79987558_79989424_79989554_79989649_79989968_79990164_79990307_79990967_79991241_79992198
ENSMUSG00000035621.14_8	chr10	+	1328	4	ISM	ENSMUSG00000035621.14	ENSMUST00000099492.10	3597	8	5559	1393	2593	-1393	3prime_fragment	FALSE	canonical	3	9	junction_3	3.68178700572909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCCTTCCATAACCCAAT	1028	False	NA	NA	False	NA	NA	NA	79989664	79992808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79989968_79990164_79990307_79990967_79991241_79992198
ENSMUSG00000035623.15_0	chr7	+	4762	16	FSM	ENSMUSG00000035623.15	ENSMUST00000107153.3	11124	16	-1	6363	-1	-5	multi-exon	FALSE	canonical	3	100	junction_2	14.120749114532	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATTCATGGCATAGATG	NA	False	NA	2	True	ATTAAA	-15	NA	97229102	97335622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_97229313_97266049_97266142_97285583_97285677_97288511_97288718_97302259_97302415_97310019_97311789_97313766_97313974_97318975_97319081_97320009_97320090_97323787_97323843_97325362_97325473_97326551_97326620_97328141_97328350_97329825_97330050_97330905_97331095_97334631
ENSMUSG00000035623.15_25	chr7	+	3282	11	ISM	ENSMUSG00000035623.15	ENSMUST00000107153.3	11124	16	81640	6363	-1015	-5	3prime_fragment	FALSE	canonical	3	124	junction_7	10.590561835899	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATTCATGGCATAGATG	NA	False	NA	2	True	ATTAAA	-15	NA	97310743	97335622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_97311789_97313766_97313974_97318975_97319081_97320009_97320090_97323787_97323843_97325362_97325473_97326551_97326620_97328141_97328350_97329825_97330050_97330905_97331095_97334631
ENSMUSG00000035623.15_32	chr7	+	3916	1	ISM	ENSMUSG00000035623.15	ENSMUST00000107153.3	11124	16	108955	11	19005	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAGTTGATGTACTTAG	5414	False	NA	NA	False	AATAAA	-7	NA	97338058	97341974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_97338100_97342000
ENSMUSG00000035629.20_0	chr16	-	5264	19	FSM	ENSMUSG00000035629.20	ENSMUST00000040986.15	5257	19	7	-14	-5	-7	multi-exon	FALSE	canonical	3	55	junction_16	7.31732258934531	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGCCTTGACGACTGTG	NA	False	NA	-21	True	AATAAA	-29	NA	32688714	32642083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_32644517_32644748_32644843_32645933_32646088_32646504_32646567_32647054_32647294_32647657_32647723_32648228_32648375_32649038_32649172_32649634_32649693_32656283_32656386_32656779_32656991_32658607_32658724_32663367_32663902_32664916_32665077_32667586_32667694_32668199_32668360_32670047_32670132_32677261_32677416_32688462
ENSMUSG00000035629.20_3	chr16	-	5413	19	FSM	ENSMUSG00000035629.20	ENSMUST00000119810.2	3371	19	108	-2150	108	-2	multi-exon	FALSE	canonical	2	4	junction_18	16.139151843335	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGACGACTGTGGAATG	NA	False	NA	-16	True	AATAAA	-34	NA	32698028	32642078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_32644517_32644748_32644843_32645933_32646088_32646504_32646567_32647054_32647294_32647657_32647723_32648228_32648375_32649038_32649172_32649634_32649693_32656283_32656386_32656779_32656991_32658607_32658724_32663367_32663902_32664916_32665077_32667586_32667694_32668199_32668360_32670047_32670132_32677261_32677416_32697632
ENSMUSG00000035629.20_4	chr16	-	2020	1	ISM	ENSMUSG00000035629.20	ENSMUST00000115105.9	5255	20	44611	33	1165	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAATCTTGCCTTTTA	NA	False	NA	-43	True	AATAAA	-7	NA	32644125	32642105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_32642100_32644100
ENSMUSG00000035632.17_12	chr7	+	2879	18	NIC	ENSMUSG00000035632.17	novel	2822	18	NA	NA	4	-3	combination_of_known_junctions	FALSE	canonical	3	136	junction_1	220.255859396784	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGGCTGGCAGCTGAGGC	2754	False	NA	NA	False	AATAAA	-11	NA	3648292	3664096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_3648595_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ENSMUSG00000035632.17_3	chr7	+	2867	18	FSM	ENSMUSG00000035632.17	ENSMUST00000038913.16	2822	18	-57	12	5	-3	multi-exon	FALSE	canonical	3	860	junction_1	78.9623448430591	1313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGGCTGGCAGCTGAGGC	2755	False	NA	NA	False	AATAAA	-11	NA	3648293	3664096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ENSMUSG00000035632.17_4	chr7	+	2871	18	NIC	ENSMUSG00000035632.17	novel	2822	18	NA	NA	5	-2	combination_of_known_junctions	FALSE	canonical	3	163	junction_7	215.895415536845	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGCTGGCAGCTGAGGCC	2755	False	NA	NA	False	AATAAA	-12	NA	3648293	3664097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656195_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ENSMUSG00000035637.15_0	chr4	+	1231	9	FSM	ENSMUSG00000035637.15	ENSMUST00000045078.13	1280	9	12	37	4	-37	multi-exon	FALSE	canonical	3	277	junction_3	33.5326333591622	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTCTGGGCCTATGACTT	-19	True	NA	11	True	ATTAAA	-14	NA	44981406	44990697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376
ENSMUSG00000035640.19_0	chr10	-	3160	11	FSM	ENSMUSG00000035640.19	ENSMUST00000147778.9	3175	11	12	3	10	-3	multi-exon	FALSE	canonical	3	10	junction_6	10.1788997440784	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTGTTTGCTCTGGGTT	9086	False	NA	-9	True	CATAAA	-10	NA	79975187	79966387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79968086_79968838_79969020_79970394_79970603_79970951_79971081_79971208_79971381_79972183_79972329_79972523_79972578_79972707_79972773_79972876_79973017_79973121_79973222_79974919
ENSMUSG00000035640.19_1	chr10	-	3911	10	NIC	ENSMUSG00000035640.19	novel	3175	11	NA	NA	12	-3	intron_retention	FALSE	canonical	3	10	junction_5	10.0492613818622	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTGTTTGCTCTGGGTT	9088	False	NA	-9	True	CATAAA	-10	NA	79975185	79966387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79969020_79970394_79970603_79970951_79971081_79971208_79971381_79972183_79972329_79972523_79972578_79972707_79972773_79972876_79973017_79973121_79973222_79974919
ENSMUSG00000035640.19_10	chr10	-	4857	10	ISM	ENSMUSG00000035640.19	ENSMUST00000147778.9	3175	11	14	2	12	-2	intron_retention	FALSE	canonical	3	10	junction_6	9.91071249821234	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTGCTCTGGGTTT	9088	False	NA	-8	True	CATAAA	-11	NA	79975185	79966386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_79968086_79968838_79969020_79970394_79970603_79970951_79971081_79971208_79971381_79972183_79972329_79972523_79972578_79972707_79972773_79972876_79973017_79973121
ENSMUSG00000035640.19_15	chr10	-	3938	10	NIC	ENSMUSG00000035640.19	novel	3175	11	NA	NA	12	-3	intron_retention	FALSE	canonical	2	8	junction_5	10.4774890970011	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTGTTTGCTCTGGGTT	9088	False	NA	-9	True	CATAAA	-10	NA	79975185	79966387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79969020_79970394_79970603_79970951_79971081_79971208_79971381_79972183_79972329_79972496_79972578_79972707_79972773_79972876_79973017_79973121_79973222_79974919
ENSMUSG00000035640.19_3	chr10	-	3057	10	FSM	ENSMUSG00000035640.19	ENSMUST00000105369.8	3121	10	66	-2	64	2	multi-exon	FALSE	canonical	2	9	junction_6	10.6817023658263	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGCTCTGGGTTTTCTC	9140	False	NA	-4	True	CATAAA	-15	NA	79975133	79966382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79968086_79968838_79969020_79970394_79970603_79970951_79971081_79971208_79971381_79972183_79972329_79972707_79972773_79972876_79973017_79973121_79973222_79974919
ENSMUSG00000035640.19_5	chr10	-	3187	11	NIC	ENSMUSG00000035640.19	novel	3175	11	NA	NA	12	-1	combination_of_known_junctions	FALSE	canonical	2	8	junction_6	10.5380263806844	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTGCTCTGGGTTTT	9088	False	NA	-7	True	CATAAA	-12	NA	79975185	79966385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79968086_79968838_79969020_79970394_79970603_79970951_79971081_79971208_79971381_79972183_79972329_79972496_79972578_79972707_79972773_79972876_79973017_79973121_79973222_79974919
ENSMUSG00000035640.19_6	chr10	-	2291	1	NIC	ENSMUSG00000035640.19	novel	2941	9	NA	NA	1839	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTGCTCTGGGTTTT	NA	False	NA	-7	True	CATAAA	-12	NA	79968676	79966385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79966400_79968700
ENSMUSG00000035640.19_7	chr10	-	3355	10	NIC	ENSMUSG00000035640.19	novel	3175	11	NA	NA	12	-1	intron_retention	FALSE	canonical	3	16	junction_9	8.743251365736	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTGCTCTGGGTTTT	9088	False	NA	-7	True	CATAAA	-12	NA	79975185	79966385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79968086_79968838_79969020_79970394_79970603_79970951_79971081_79971208_79971381_79972183_79972578_79972707_79972773_79972876_79973017_79973121_79973222_79974919
ENSMUSG00000035642.17_0	chr7	-	754	4	FSM	ENSMUSG00000035642.17	ENSMUST00000136757.8	789	4	17	18	-1	-2	multi-exon	FALSE	canonical	3	37	junction_3	30.4740326617051	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGCCAAAGAGAAAGTTGA	NA	False	NA	NA	False	AATAAA	-13	NA	97228687	97199555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97228572
ENSMUSG00000035642.17_1	chr7	-	859	5	FSM	ENSMUSG00000035642.17	ENSMUST00000154853.8	883	5	21	3	-1	-3	multi-exon	FALSE	canonical	3	45	junction_3	23.5902522241709	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAGAAAGTTGAGAGCAT	NA	False	NA	NA	False	AATAAA	-19	NA	97228682	97199549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97224794_97224899_97228572
ENSMUSG00000035649.18_0	chr4	+	2488	9	NIC	ENSMUSG00000035649.18	novel	2503	9	NA	NA	2	3	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	46.0867049700887	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATAAATGTGTTTATTG	12	True	NA	NA	False	AATAAA	-17	NA	44756589	44932206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_44756697_44761849_44762475_44893532_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44931035
ENSMUSG00000035649.18_1	chr4	+	2481	9	NNC	ENSMUSG00000035649.18	novel	2503	9	NA	NA	10	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	47.4255996272056	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAATAAATGTGTTTATT	20	True	NA	NA	False	AATAAA	-16	NA	44756597	44932205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_44756693_44761849_44762479_44893530_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44931035
ENSMUSG00000035649.18_13	chr4	+	3620	3	FSM	ENSMUSG00000035649.18	ENSMUST00000147272.8	4251	3	623	8	623	4	multi-exon	FALSE	canonical	3	133	junction_2	10.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAAATGTGTTTATTGT	NA	False	NA	NA	False	AATAAA	-18	NA	44923740	44932207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_44926071_44929117_44929236_44931035
ENSMUSG00000035649.18_16	chr4	+	481	1	ISM	ENSMUSG00000035649.18	ENSMUST00000147272.8	4251	3	8607	10	5730	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAATAAATGTGTTTATT	7555	False	NA	NA	False	AATAAA	-16	NA	44931724	44932205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_44931700_44932200
ENSMUSG00000035649.18_2	chr4	+	2476	9	FSM	ENSMUSG00000035649.18	ENSMUST00000107824.9	2503	9	30	-3	10	3	multi-exon	FALSE	canonical	3	29	junction_2	42.9270820694815	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATAAATGTGTTTATTG	20	True	NA	NA	False	AATAAA	-17	NA	44756597	44932206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_44756693_44761849_44762475_44893532_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44931035
ENSMUSG00000035649.18_5	chr4	+	2443	9	NNC	ENSMUSG00000035649.18	novel	2503	9	NA	NA	3	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	50.0867996581934	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAAATGTGTTTATTGT	-4	True	NA	NA	False	AATAAA	-18	NA	44756641	44932207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_44756697_44761849_44762479_44893530_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44931035
ENSMUSG00000035666.15_0	chr2	-	6963	5	FSM	ENSMUSG00000035666.15	ENSMUST00000037117.6	6941	5	-25	3	-25	-3	multi-exon	FALSE	canonical	3	186	junction_4	18.8215302247187	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGCAAAGGGGATTTTTT	NA	False	NA	-8	True	AATAAA	-16	NA	28730323	28712319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_28716810_28717489_28717579_28720513_28720645_28723561_28725386_28729894
ENSMUSG00000035666.15_2	chr2	-	2799	1	ISM	ENSMUSG00000035666.15	ENSMUST00000171404.8	7127	6	15256	7	15182	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAAGGGGATTTTTTTT	NA	False	NA	-6	True	AATAAA	-18	NA	28715116	28712317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_28712300_28715100
ENSMUSG00000035666.15_3	chr2	-	7068	6	NIC	ENSMUSG00000035666.15	novel	7127	6	NA	NA	-25	-1	combination_of_known_junctions	FALSE	canonical	3	29	junction_5	92.4588557143122	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAAGGGGATTTTTTTT	NA	False	NA	-6	True	AATAAA	-18	NA	28730323	28712317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_28716810_28717489_28717579_28720513_28720645_28723561_28725386_28726036_28726140_28729894
ENSMUSG00000035666.15_4	chr2	-	5526	4	ISM	ENSMUSG00000035666.15	ENSMUST00000037117.6	6941	5	5922	2	5922	-2	3prime_fragment	FALSE	canonical	3	207	junction_1	11.6714276000077	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAAAGGGGATTTTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	28724376	28712318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_28716810_28717489_28717579_28720513_28720645_28723561
ENSMUSG00000035666.15_9	chr2	-	7065	6	FSM	ENSMUSG00000035666.15	ENSMUST00000171404.8	7127	6	54	8	-20	-2	multi-exon	FALSE	canonical	2	8	junction_4	103.395551161547	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAAAGGGGATTTTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	28730318	28712318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_28716810_28717489_28717579_28720513_28720645_28723561_28725386_28726422_28726529_28729894
ENSMUSG00000035671.7_0	chr8	-	4342	14	FSM	ENSMUSG00000035671.7	ENSMUST00000039480.7	4625	14	0	283	0	-283	multi-exon	FALSE	canonical	3	19	junction_10	5.27694550342846	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCTTTTTAACTTCAAG	6086	False	NA	-17	True	AAAAAG	-10	NA	84963684	84937589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84939435_84940651_84940734_84943873_84944038_84946454_84946610_84949848_84949985_84950299_84950555_84950771_84950910_84952444_84952796_84953300_84953469_84955420_84955572_84955651_84955801_84957369_84957727_84961531_84961734_84963495
ENSMUSG00000035671.7_13	chr8	-	2703	7	ISM	ENSMUSG00000035671.7	ENSMUST00000039480.7	4625	14	12862	268	12862	-268	3prime_fragment	TRUE	canonical	3	22	junction_5	3.85861230093008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACTGGGTTGCATTGC	NA	False	NA	-2	True	AAAAAG	-25	NA	84950822	84937574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_84939435_84940651_84940734_84943873_84944038_84946454_84946610_84949848_84949985_84950299_84950555_84950771
ENSMUSG00000035671.7_2	chr8	-	2480	5	ISM	ENSMUSG00000035671.7	ENSMUST00000039480.7	4625	14	13597	288	13597	-288	3prime_fragment	FALSE	canonical	3	31	junction_1	1.22474487139159	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAACTTCTTTTTAACT	NA	False	NA	-22	True	AAAAAG	-5	NA	84950087	84937594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_84939435_84940651_84940734_84943873_84944038_84946454_84946610_84949848
ENSMUSG00000035671.7_3	chr8	-	1093	1	ISM	ENSMUSG00000035671.7	ENSMUST00000039480.7	4625	14	25002	283	25002	-283	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCTTTTTAACTTCAAG	7383	False	NA	-17	True	AAAAAG	-10	NA	84938682	84937589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_84937600_84938700
ENSMUSG00000035673.11_0	chr10	-	4629	32	NIC	ENSMUSG00000035673.11	novel	3903	32	NA	NA	-2	-28	combination_of_known_junctions	FALSE	canonical	3	132	junction_8	18.0258226152743	254	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATATGTGCCTTTTGC	NA	False	NA	-24	True	AATGAA	-29	NA	79938534	79892853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
ENSMUSG00000035673.11_1	chr10	-	4630	32	ISM	ENSMUSG00000035673.11	ENSMUST00000219260.2	4850	33	1672	28	0	-28	3prime_fragment	FALSE	canonical	3	16	junction_5	30.9623987325878	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATATGTGCCTTTTGC	NA	False	NA	-24	True	AATGAA	-29	NA	79938532	79892853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894567_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
ENSMUSG00000035673.11_51	chr10	-	2397	18	ISM	ENSMUSG00000035673.11	ENSMUST00000219260.2	4850	33	1669	5425	-3	-1	internal_fragment	FALSE	canonical	3	133	junction_10	12.4322384803871	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCATGGGTCTCCATTCCT	NA	False	NA	-1	True	AATAAA	-20	NA	79938535	79898250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
ENSMUSG00000035673.11_7	chr10	-	4332	29	NIC	ENSMUSG00000035673.11	novel	3903	32	NA	NA	17	-28	combination_of_known_junctions	FALSE	canonical	3	19	junction_28	32.0305179732182	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATATGTGCCTTTTGC	5711	False	NA	-24	True	AATGAA	-29	NA	79911217	79892853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79911061
ENSMUSG00000035674.14_0	chr7	+	333	4	FSM	ENSMUSG00000035674.14	ENSMUST00000076657.11	515	4	10	172	-2	3	multi-exon	FALSE	canonical	3	2080	junction_1	661.918591839074	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCACAATCTTTTCTTT	265	False	NA	14	True	AATAAA	-16	NA	3620381	3623154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3620407_3620615_3620691_3622428_3622507_3622999
ENSMUSG00000035674.14_12	chr7	+	308	3	ISM	ENSMUSG00000035674.14	ENSMUST00000148403.2	343	4	226	8	0	3	3prime_fragment	FALSE	canonical	3	3459	junction_2	24.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCACAATCTTTTCTTT	499	False	NA	14	True	AATAAA	-16	NA	3620615	3623154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_3620691_3622428_3622507_3622999
ENSMUSG00000035674.14_2	chr7	+	339	4	FSM	ENSMUSG00000035674.14	ENSMUST00000148403.2	343	4	-7	11	-1	0	multi-exon	FALSE	canonical	3	46	junction_1	1620.57650921585	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACCCCACAATCTTTTC	266	False	NA	11	True	AATAAA	-13	NA	3620382	3623151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3620417_3620615_3620691_3622428_3622507_3622999
ENSMUSG00000035678.9_0	chr17	+	1296	3	FSM	ENSMUSG00000035678.9	ENSMUST00000039490.9	1290	3	-10	4	-10	-4	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAAATAAGCCTTTTATT	15	False	NA	NA	False	AATAAA	-6	NA	57412314	57414753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57412861_57413249_57413287_57414040
ENSMUSG00000035683.14_0	chr4	+	2517	18	FSM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	57	381	57	-381	multi-exon	FALSE	canonical	2	288	junction_12	49.6985375708199	669	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAGAGACTATTTGGAGT	13	True	NA	24	True	AATAAA	-25	NA	44300932	44364294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
ENSMUSG00000035686.9_0	chr7	-	1075	2	FSM	ENSMUSG00000035686.9	ENSMUST00000043077.8	1277	2	198	4	-13	-4	multi-exon	FALSE	canonical	3	27	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATGGCATGTTGGTCT	NA	False	NA	-10	True	ATTAAA	-11	NA	97066739	97062148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_97062723_97066238
ENSMUSG00000035696.16_11	chr4	-	4066	5	ISM	ENSMUSG00000035696.16	ENSMUST00000148869.8	848	6	1076	-3286	1076	-5	3prime_fragment	FALSE	canonical	3	65	junction_2	7.1894019222742	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACCTAAGTCGTGTTTC	5613	False	NA	-10	True	AATAAA	-16	NA	44137876	44126219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554
ENSMUSG00000035696.16_12	chr4	-	5002	11	FSM	ENSMUSG00000035696.16	ENSMUST00000098098.9	5061	11	51	8	-22	-3	multi-exon	FALSE	canonical	2	7	junction_10	20.7749849578766	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTAAGTCGTGTTTCAT	1710	False	NA	-8	True	AATAAA	-18	NA	44167557	44126217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44167317
ENSMUSG00000035696.16_13	chr4	-	4797	11	NIC	ENSMUSG00000035696.16	novel	5012	12	NA	NA	6	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	22.5878285808973	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTAAGTCGTGTTTCAT	1	True	NA	-8	True	AATAAA	-18	NA	44168277	44126217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44168242
ENSMUSG00000035696.16_15	chr4	-	2355	1	ISM	ENSMUSG00000035696.16	ENSMUST00000098098.9	5061	11	39036	8	10380	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTAAGTCGTGTTTCAT	551	False	NA	-8	True	AATAAA	-18	NA	44128572	44126217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_44126200_44128600
ENSMUSG00000035696.16_17	chr4	-	4701	10	ISM	ENSMUSG00000035696.16	ENSMUST00000107836.8	1694	12	6451	-3202	6451	-3	3prime_fragment	FALSE	canonical	3	42	junction_6	11.5223882983853	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTAAGTCGTGTTTCAT	1497	False	NA	-8	True	AATAAA	-18	NA	44152492	44126217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359
ENSMUSG00000035696.16_2	chr4	-	5058	11	NIC	ENSMUSG00000035696.16	novel	5240	12	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	27	junction_10	15.9874951133691	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTAAGTCGTGTTTCAT	18	True	NA	-8	True	AATAAA	-18	NA	44167922	44126217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44167626
ENSMUSG00000035696.16_3	chr4	-	5117	12	NIC	ENSMUSG00000035696.16	novel	5240	12	NA	NA	-11	-3	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	22.9112553090116	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTAAGTCGTGTTTCAT	7	True	NA	-8	True	AATAAA	-18	NA	44167933	44126217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44159004_44159053_44167626
ENSMUSG00000035696.16_31	chr4	-	3626	3	ISM	ENSMUSG00000035696.16	ENSMUST00000148869.8	848	6	5224	-3286	5224	-5	3prime_fragment	FALSE	canonical	3	65	junction_2	8.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACCTAAGTCGTGTTTC	9761	False	NA	-10	True	AATAAA	-16	NA	44133728	44126219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_44129657_44131543_44131644_44133639
ENSMUSG00000035696.16_5	chr4	-	4449	6	FSM	ENSMUSG00000035696.16	ENSMUST00000148869.8	848	6	-313	-3288	-313	-3	multi-exon	FALSE	canonical	3	65	junction_2	7.22772439983706	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTAAGTCGTGTTTCAT	9830	False	NA	-8	True	AATAAA	-18	NA	44139265	44126217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669
ENSMUSG00000035696.16_6	chr4	-	5193	11	NIC	ENSMUSG00000035696.16	novel	5240	12	NA	NA	24	-5	combination_of_known_junctions	FALSE	canonical	1	4	junction_10	21.5455331797568	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACCTAAGTCGTGTTTC	-4	True	NA	-10	True	AATAAA	-16	NA	44167898	44126219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44167465
ENSMUSG00000035696.16_7	chr4	-	5242	12	FSM	ENSMUSG00000035696.16	ENSMUST00000102934.9	5240	12	-5	3	-5	-3	multi-exon	FALSE	canonical	3	13	junction_10	22.7367253069995	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTAAGTCGTGTTTCAT	-16	True	NA	-8	True	AATAAA	-18	NA	44167956	44126217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44158902_44159053_44167626
ENSMUSG00000035697.15_1	chr10	+	3894	23	FSM	ENSMUSG00000035697.15	ENSMUST00000099501.10	3948	23	50	4	-36	0	multi-exon	TRUE	canonical	1	1	junction_1	23.4611072568839	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCCCGATCTTGTTCTT	NA	False	NA	12	True	AATAAA	-17	NA	79852536	79867302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79852753_79853613_79853939_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79860686_79861242_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
ENSMUSG00000035697.15_2	chr10	+	3493	22	FSM	ENSMUSG00000035697.15	ENSMUST00000043311.7	3499	22	5	1	5	-1	multi-exon	FALSE	canonical	3	46	junction_7	15.7468637773006	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGCCCGATCTTGTTCT	825	False	NA	11	True	AATAAA	-16	NA	79855491	79867301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79855633_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79860686_79861242_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
ENSMUSG00000035697.15_20	chr10	+	2245	11	ISM	ENSMUSG00000035697.15	ENSMUST00000150022.2	2980	15	4424	0	4424	0	3prime_fragment	FALSE	canonical	3	63	junction_3	14.0943250991312	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCCACAGCCCGATCTT	314	False	NA	6	True	AATAAA	-11	NA	79862000	79867296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
ENSMUSG00000035697.15_25	chr10	+	1281	4	ISM	ENSMUSG00000035697.15	ENSMUST00000150022.2	2980	15	6890	0	6890	0	3prime_fragment	FALSE	canonical	3	84	junction_1	10.6249183003395	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCCACAGCCCGATCTT	2780	False	NA	6	True	AATAAA	-11	NA	79864466	79867296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79864718_79864806_79865018_79866122_79866211_79866565
ENSMUSG00000035699.9_1	chr16	-	1427	9	FSM	ENSMUSG00000035699.9	ENSMUST00000042042.9	2618	9	156	1035	-20	-16	multi-exon	FALSE	canonical	3	30	junction_3	5.50993421013355	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGACGCTTGCACAAGACA	NA	False	NA	-24	True	AATAAA	-11	NA	32306541	32294356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_32294697_32295190_32295297_32295984_32296132_32296365_32296478_32297122_32297282_32297533_32297608_32298467_32298623_32304952_32305048_32306302
ENSMUSG00000035704.18_0	chr7	+	1985	13	FSM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	18	36	18	-36	multi-exon	FALSE	canonical	3	93	junction_8	19.8289560996034	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCATCAAATAGCAAAGTG	NA	False	NA	27	True	TATAAA	-16	NA	97020830	97041356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
ENSMUSG00000035704.18_12	chr7	+	974	8	ISM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	21	8314	21	-7778	5prime_fragment	FALSE	canonical	3	115	junction_7	14.6175739911846	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACCTGCCCGTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	97020833	97033078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892
ENSMUSG00000035704.18_31	chr7	+	1956	13	NIC	ENSMUSG00000035704.18	novel	2039	13	NA	NA	17	-32	combination_of_known_junctions	TRUE	canonical	3	13	junction_9	36.0380778560061	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATAGCAAAGTGTTTT	NA	False	NA	31	True	TATAAA	-20	NA	97020829	97041360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037689_97037796_97039448_97039547_97040095_97040169_97040734
ENSMUSG00000035704.18_4	chr7	+	4948	12	NIC	ENSMUSG00000035704.18	novel	2039	13	NA	NA	20	-32	intron_retention	FALSE	canonical	3	13	junction_8	36.8357982546578	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATAGCAAAGTGTTTT	NA	False	NA	31	True	TATAAA	-20	NA	97020832	97041360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97036149_97037689_97037796_97039448_97039547_97040095_97040169_97040734
ENSMUSG00000035713.16_1	chr7	-	4345	11	FSM	ENSMUSG00000035713.16	ENSMUST00000139582.9	4262	11	-111	28	-111	-2	multi-exon	FALSE	canonical	2	4	junction_5	1.83303027798234	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCAGGATGCTGT	NA	False	NA	-2	True	AATAAA	-14	NA	96981338	96958614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_96959704_96960559_96961833_96962262_96962370_96962705_96962800_96963940_96964135_96969173_96969333_96970766_96970869_96971255_96971386_96973414_96973548_96974498_96975268_96981043
ENSMUSG00000035713.16_11	chr7	-	2793	6	NIC	ENSMUSG00000035713.16	novel	2659	8	NA	NA	-88	0	intron_retention	FALSE	canonical	2	3	junction_5	2.33238075793812	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCAGGATGCTGTTC	NA	False	NA	0	True	AATAAA	-16	NA	96964320	96958612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_96959704_96960559_96961833_96962262_96962370_96962705_96962800_96963940_96964135_96964286
ENSMUSG00000035713.16_3	chr7	-	2690	5	ISM	ENSMUSG00000035713.16	ENSMUST00000168435.7	3982	10	11104	28	165	-2	3prime_fragment	FALSE	canonical	2	7	junction_3	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCAGGATGCTGT	NA	False	NA	-2	True	AATAAA	-14	NA	96964067	96958614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_96959704_96960559_96961833_96962262_96962370_96962705_96962800_96963940
ENSMUSG00000035713.16_6	chr7	-	5229	10	NIC	ENSMUSG00000035713.16	novel	4262	11	NA	NA	-44	-2	intron_retention	FALSE	canonical	2	4	junction_5	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCAGGATGCTGT	NA	False	NA	-2	True	AATAAA	-14	NA	96981271	96958614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_96959704_96960559_96961833_96962262_96962370_96962705_96962800_96963940_96964135_96969173_96969333_96970766_96970869_96971255_96971386_96973414_96975268_96981043
ENSMUSG00000035713.16_7	chr7	-	2120	2	ISM	ENSMUSG00000035713.16	ENSMUST00000181651.3	2659	8	3611	2	2642	-2	intron_retention	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCAGGATGCTGT	NA	False	NA	-2	True	AATAAA	-14	NA	96961590	96958614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_96959704_96960559
ENSMUSG00000035722.16_1	chr10	+	6711	47	NIC	ENSMUSG00000035722.16	novel	6696	47	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	12	junction_12	11.8955758960178	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGAGAATGAGGCCACGG	6010	False	NA	1	True	AATAAA	-10	NA	79832327	79851397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_79832423_79833441_79833515_79833602_79833697_79833847_79833990_79834077_79834191_79834284_79834359_79834590_79834672_79835214_79835426_79835514_79835655_79836545_79836663_79836756_79836925_79837323_79837554_79837868_79838046_79838340_79838564_79838664_79838887_79838965_79839168_79839630_79839742_79840214_79840387_79840552_79840685_79840787_79840928_79841476_79841615_79841821_79842010_79842085_79842144_79842266_79842545_79842719_79842757_79842969_79843063_79843133_79843286_79843487_79843613_79843696_79843796_79843978_79844267_79844372_79844406_79844496_79844675_79844761_79844932_79845691_79845870_79845984_79846101_79846869_79847015_79847108_79847233_79847546_79847677_79847748_79847870_79847957_79848021_79849145_79849253_79849452_79849595_79849679_79849815_79850062_79850167_79850301_79850395_79850780_79851022_79851139
ENSMUSG00000035722.16_31	chr10	+	967	6	ISM	ENSMUSG00000035722.16	ENSMUST00000043866.8	6590	46	16009	6	16009	-6	3prime_fragment	FALSE	canonical	3	34	junction_1	12.1424873893284	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGAGAATGAGGCCACG	8562	False	NA	0	True	AATAAA	-9	NA	79849457	79851396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79849595_79849679_79849815_79850062_79850167_79850301_79850395_79850780_79851022_79851139
ENSMUSG00000035722.16_32	chr10	+	812	5	ISM	ENSMUSG00000035722.16	ENSMUST00000043866.8	6590	46	16250	5	16250	-5	3prime_fragment	FALSE	canonical	3	44	junction_1	9.35414346693485	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGAGAATGAGGCCACGG	8803	False	NA	1	True	AATAAA	-10	NA	79849698	79851397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79849815_79850062_79850167_79850301_79850395_79850780_79851022_79851139
ENSMUSG00000035722.16_9	chr10	+	6686	47	FSM	ENSMUSG00000035722.16	ENSMUST00000132517.8	6696	47	1	9	1	-5	multi-exon	FALSE	canonical	3	7	junction_26	12.2414276938957	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGAGAATGAGGCCACGG	6011	False	NA	1	True	AATAAA	-10	NA	79832328	79851397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79832423_79833441_79833515_79833602_79833697_79833847_79833990_79834077_79834191_79834284_79834359_79834590_79834672_79835214_79835426_79835514_79835655_79836545_79836663_79836756_79836925_79837323_79837554_79837868_79838046_79838340_79838564_79838664_79838887_79838965_79839168_79839630_79839742_79840214_79840387_79840552_79840685_79840787_79840928_79841476_79841615_79841821_79842010_79842085_79842144_79842266_79842545_79842719_79842757_79842969_79843063_79843157_79843286_79843487_79843613_79843696_79843796_79843978_79844267_79844372_79844406_79844496_79844675_79844761_79844932_79845691_79845870_79845984_79846101_79846869_79847015_79847108_79847233_79847546_79847677_79847748_79847870_79847957_79848021_79849145_79849253_79849452_79849595_79849679_79849815_79850062_79850167_79850301_79850395_79850780_79851022_79851139
ENSMUSG00000035725.14_0	chrX	-	4252	9	FSM	ENSMUSG00000035725.14	ENSMUST00000036333.14	4146	9	327	-433	21	433	multi-exon	FALSE	canonical	3	41	junction_4	6.21992765231236	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATCTGTTTCAGGTCG	NA	False	NA	NA	False	AATAAA	-15	NA	76839557	76804583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_76807498_76807711_76807861_76808178_76808257_76808954_76809013_76814852_76814949_76816721_76816842_76825643_76825908_76829733_76829903_76839153
ENSMUSG00000035725.14_2	chrX	-	4143	8	NIC	ENSMUSG00000035725.14	novel	4146	9	NA	NA	34	433	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	17.4086537242199	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATCTGTTTCAGGTCG	NA	False	NA	NA	False	AATAAA	-15	NA	76839544	76804583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_76807498_76807711_76807861_76808178_76808257_76808954_76809013_76816721_76816842_76825643_76825908_76829733_76829903_76839153
ENSMUSG00000035725.14_3	chrX	-	3509	7	ISM	ENSMUSG00000035725.14	ENSMUST00000036333.14	4146	9	14147	-433	13841	433	3prime_fragment	FALSE	canonical	3	41	junction_4	6.79256129077161	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATCTGTTTCAGGTCG	NA	False	NA	NA	False	AATAAA	-15	NA	76825737	76804583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_76807498_76807711_76807861_76808178_76808257_76808954_76809013_76814852_76814949_76816721_76816842_76825643
ENSMUSG00000035725.14_4	chrX	-	2991	2	ISM	ENSMUSG00000035725.14	ENSMUST00000036333.14	4146	9	32096	-433	31790	433	3prime_fragment	FALSE	canonical	3	58	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATCTGTTTCAGGTCG	NA	False	NA	NA	False	AATAAA	-15	NA	76807788	76804583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_76807498_76807711
ENSMUSG00000035725.14_7	chrX	-	4030	7	NIC	ENSMUSG00000035725.14	novel	4146	9	NA	NA	27	433	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	19.7800404448525	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATCTGTTTCAGGTCG	NA	False	NA	NA	False	AATAAA	-15	NA	76839551	76804583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_76807498_76807711_76807861_76808178_76808257_76808954_76809013_76825643_76825908_76829733_76829903_76839153
ENSMUSG00000035726.9_1	chr14	-	4455	26	FSM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	193	25	193	-25	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	2654	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTTTGTTTTTTTT	NA	False	NA	-26	True	AATAAA	-15	NA	52434680	52397895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
ENSMUSG00000035735.11_0	chr19	-	5641	20	FSM	ENSMUSG00000035735.11	ENSMUST00000039327.11	5634	20	-10	3	-10	0	multi-exon	TRUE	canonical	1	2	junction_2	2.21177909362639	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTCTGCCTCCTGTGGT	NA	False	NA	NA	False	TATAAA	-15	NA	10282251	10222631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10225989_10227732_10227921_10228430_10228561_10229402_10229603_10230693_10230767_10231080_10231150_10232170_10232314_10233024_10233106_10233487_10233566_10233660_10233745_10234181_10234336_10238014_10238140_10239857_10239936_10240457_10240593_10242371_10242460_10246550_10246690_10247080_10247183_10248351_10248564_10248857_10248996_10282184
ENSMUSG00000035735.11_1	chr19	-	1849	1	ISM	ENSMUSG00000035735.11	ENSMUST00000039327.11	5634	20	57761	3	9755	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTCTGCCTCCTGTGGT	6566	False	NA	NA	False	TATAAA	-15	NA	10224480	10222631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10222600_10224500
ENSMUSG00000035754.9_1	chr10	+	1394	10	FSM	ENSMUSG00000035754.9	ENSMUST00000045247.9	3911	10	3	2514	0	78	multi-exon	FALSE	canonical	3	1673	junction_5	33.7828943493195	1442	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTGCGCCTTGGTTGT	2289	False	NA	28	True	ACTAAA	-16	NA	79795988	79803523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
ENSMUSG00000035757.18_0	chr15	+	2372	9	FSM	ENSMUSG00000035757.18	ENSMUST00000082439.6	2383	9	10	1	10	-1	multi-exon	TRUE	canonical	3	22	junction_2	3.38193731461717	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTCTGGTCACTGCCTTG	NA	False	NA	NA	False	AATAAA	-17	NA	88973296	88984542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_88973869_88976906_88977111_88978339_88978527_88979801_88979933_88980741_88981023_88982834_88982980_88983465_88983652_88983789_88983947_88984033
ENSMUSG00000035757.18_1	chr15	+	3604	8	NIC	ENSMUSG00000035757.18	novel	2383	9	NA	NA	6	-2	intron_retention	FALSE	canonical	3	28	junction_7	2.1189138534559	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTCTGGTCACTGCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	88973292	88984541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_88973869_88976906_88978527_88979801_88979933_88980741_88981023_88982834_88982980_88983465_88983652_88983789_88983947_88984033
ENSMUSG00000035759.5_0	chr10	+	2732	2	FSM	ENSMUSG00000035759.5	ENSMUST00000040454.5	2744	2	10	2	10	0	multi-exon	FALSE	canonical	3	23	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGCATGTAAGTTAATT	NA	False	NA	NA	False	AATAAA	-18	NA	111134549	111137586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_111134769_111135073
ENSMUSG00000035759.5_1	chr10	+	2708	3	NNC	ENSMUSG00000035759.5	novel	2744	2	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGCATGTAAGTTAATT	NA	False	NA	NA	False	AATAAA	-18	NA	111134549	111137586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_111134769_111135073_111137471_111137494
ENSMUSG00000035759.5_3	chr10	+	2127	2	NNC	ENSMUSG00000035759.5	novel	2744	2	NA	NA	903	5	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAGTTAATTGTCCTTG	NA	False	NA	NA	False	AATAAA	-25	NA	111135442	111137593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_111137471_111137494
ENSMUSG00000035759.5_4	chr10	+	2222	1	FSM	ENSMUSG00000035759.5	ENSMUST00000219990.2	3047	1	825	0	825	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGCATGTAAGTTAATT	NA	False	NA	NA	False	AATAAA	-18	NA	111135364	111137586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_111135400_111137600
ENSMUSG00000035762.12_0	chr13	+	2573	12	FSM	ENSMUSG00000035762.12	ENSMUST00000057495.10	2857	12	10	274	-2	1	multi-exon	FALSE	canonical	0	0	junction_10	57.0470300398157	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAGAGTGTAATTTATTT	NA	False	NA	18	True	ATTAAA	-19	NA	84370428	84443986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ENSMUSG00000035762.12_2	chr13	+	2426	11	FSM	ENSMUSG00000035762.12	ENSMUST00000225069.2	2414	11	-12	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	81.3373223065525	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACAGAGTGTAATTTATT	NA	False	NA	17	True	ATTAAA	-18	NA	84370432	84443985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_84370554_84405879_84405964_84408261_84408360_84420289_84420447_84430867_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ENSMUSG00000035762.12_3	chr13	+	2635	12	FSM	ENSMUSG00000035762.12	ENSMUST00000223827.2	2632	12	-5	2	-3	2	multi-exon	TRUE	canonical	0	0	junction_10	68.3415099589633	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGAGTGTAATTTATTTG	NA	False	NA	19	True	ATTAAA	-20	NA	84370427	84443987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432305_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ENSMUSG00000035762.12_5	chr13	+	2531	12	NIC	ENSMUSG00000035762.12	novel	2857	12	NA	NA	-4	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	69.776028941722	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCTCAACAGAGTGTAAT	NA	False	NA	12	True	ATTAAA	-13	NA	84370426	84443980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430867_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ENSMUSG00000035762.12_8	chr13	+	2464	11	NIC	ENSMUSG00000035762.12	novel	2414	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	71.7933840963079	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACAGAGTGTAATTTATT	NA	False	NA	17	True	ATTAAA	-18	NA	84370432	84443985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_84370554_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ENSMUSG00000035764.6_0	chr16	-	4129	3	FSM	ENSMUSG00000035764.6	ENSMUST00000042732.6	4179	3	42	8	42	-8	multi-exon	FALSE	canonical	3	188	junction_2	4	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGGAACTCTGTGGTAGT	7865	False	NA	-6	True	ATTAAA	-9	NA	32065934	32048937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_32052087_32057217_32057575_32065311
ENSMUSG00000035764.6_1	chr16	-	2385	1	ISM	ENSMUSG00000035764.6	ENSMUST00000042732.6	4179	3	14658	4	14658	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTCTGTGGTAGTCCAT	1018	False	NA	-2	True	ATTAAA	-13	NA	32051318	32048933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_32048900_32051300
ENSMUSG00000035765.11_0	chr18	+	2497	17	FSM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	-41	0	-37	0	multi-exon	FALSE	canonical	3	162	junction_13	17.5886149255705	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75151814	75420035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
ENSMUSG00000035765.11_15	chr18	+	1575	9	FSM	ENSMUSG00000035765.11	ENSMUST00000236220.2	1571	9	-15	11	-15	-11	multi-exon	FALSE	canonical	2	9	junction_8	64.1424196612507	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAAAAAGTCCAGTTT	NA	False	NA	NA	False	NA	NA	NA	75151836	75239479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75238937
ENSMUSG00000035765.11_3	chr18	+	3514	14	NIC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	-48	1403	combination_of_known_junctions	FALSE	canonical	2	4	junction_13	52.5754459305187	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATATCTCAGTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	75151803	75285502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75283751
ENSMUSG00000035765.11_4	chr18	+	2325	16	NIC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	-48	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_14	49.9165525875157	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75151803	75420035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75376355_75376470_75419690
ENSMUSG00000035765.11_7	chr18	+	2790	15	ISM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	-21	56020	-17	-56020	5prime_fragment	FALSE	canonical	3	162	junction_13	14.7406144473599	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAATTTGGGGCTCTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	75151834	75364015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060
ENSMUSG00000035769.10_0	chr9	+	3201	19	FSM	ENSMUSG00000035769.10	ENSMUST00000039610.10	3383	19	185	-3	-3	-2	multi-exon	FALSE	canonical	3	51	junction_3	12.9909750249458	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCTAAAATCCACCTCTC	NA	False	NA	14	True	AATAAA	-14	NA	119186631	119222389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119186774_119188297_119188381_119190179_119190250_119193562_119193644_119196554_119196642_119197137_119197267_119198685_119198752_119200981_119201055_119203365_119203485_119207309_119207392_119209051_119209093_119209649_119209766_119210567_119210684_119211319_119211394_119212402_119212500_119215384_119215444_119217746_119217835_119219495_119219591_119220806
ENSMUSG00000035769.10_1	chr9	+	3112	18	FSM	ENSMUSG00000035769.10	ENSMUST00000215822.2	3134	18	16	6	-2	-2	multi-exon	FALSE	canonical	3	22	junction_2	17.3265002945415	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCTAAAATCCACCTCTC	NA	False	NA	14	True	AATAAA	-14	NA	119186650	119222389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119186774_119188297_119188381_119193562_119193644_119196554_119196642_119197137_119197267_119198685_119198752_119200981_119201055_119203365_119203485_119207309_119207392_119209051_119209093_119209649_119209766_119210567_119210684_119211319_119211394_119212402_119212500_119215384_119215444_119217746_119217835_119219495_119219591_119220806
ENSMUSG00000035770.9_1	chr8	-	1894	1	ISM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	23472	2	3827	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGGTTTTGGTGACTTTG	NA	False	NA	-3	True	AATAAA	-18	NA	105146207	105144313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_105144300_105146200
ENSMUSG00000035770.9_2	chr8	-	3139	13	FSM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	232	1256	-71	-1256	multi-exon	FALSE	canonical	3	129	junction_6	10.797054639525	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCAGTTTTTTTTGTTGT	2000	False	NA	-11	True	AATATA	-15	NA	105169447	105145567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_105147315_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
ENSMUSG00000035772.12_0	chr2	+	2041	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	20	19	4	-6	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAACCACCTGGTGTCAG	NA	False	NA	9	True	NA	NA	NA	28358097	28361171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
ENSMUSG00000035772.12_1	chr2	+	2516	3	FSM	ENSMUSG00000035772.12	ENSMUST00000146332.2	2504	3	-16	4	-8	-4	multi-exon	FALSE	canonical	3	604	junction_2	8	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACCACCTGGTGTCAGAC	NA	False	NA	11	True	NA	NA	NA	28358085	28361173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28358155_28358254_28358963_28359434
ENSMUSG00000035772.12_11	chr2	+	1404	1	ISM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	1688	21	1664	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTAAACCACCTGGTGTC	NA	False	NA	7	True	NA	NA	NA	28359765	28361169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_28359800_28361200
ENSMUSG00000035776.15_0	chrX	-	3379	10	FSM	ENSMUSG00000035776.15	ENSMUST00000037391.12	3600	10	209	12	5	-12	multi-exon	FALSE	canonical	3	43	junction_4	6.51683479938452	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTCCTTATGTCCTGA	NA	False	NA	-11	True	NA	NA	NA	70536246	70463677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_70466356_70467629_70467696_70472652_70472773_70473916_70473956_70481739_70481806_70484130_70484218_70484679_70484752_70493544_70493614_70494216_70494280_70536127
ENSMUSG00000035776.15_2	chrX	-	3310	9	FSM	ENSMUSG00000035776.15	ENSMUST00000080035.11	3327	9	5	12	5	-12	multi-exon	FALSE	canonical	1	4	junction_7	17.0399347123162	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTCCTTATGTCCTGA	NA	False	NA	-11	True	NA	NA	NA	70536246	70463677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_70466356_70467629_70467696_70472652_70472773_70473916_70473956_70481739_70481806_70484130_70484218_70484679_70484752_70494216_70494280_70536127
ENSMUSG00000035776.15_4	chrX	-	1821	1	ISM	ENSMUSG00000035776.15	ENSMUST00000080035.11	3327	9	70753	12	70713	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTCCTTATGTCCTGA	NA	False	NA	-11	True	NA	NA	NA	70465498	70463677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_70463700_70465500
ENSMUSG00000035778.18_0	chr2	-	3408	9	FSM	ENSMUSG00000035778.18	ENSMUST00000102794.8	3606	9	196	2	-4	-2	multi-exon	FALSE	canonical	3	26	junction_8	26.0836994117016	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTCTGGTCTGGTAT	NA	False	NA	-5	True	AATAAA	-11	NA	35351265	35290196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35351206
ENSMUSG00000035778.18_11	chr2	-	3440	8	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	760	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_7	27.6708053621096	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTCTGGTCTGGTAT	NA	False	NA	-5	True	AATAAA	-11	NA	35352483	35290196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35352356
ENSMUSG00000035778.18_12	chr2	-	3372	8	FSM	ENSMUSG00000035778.18	ENSMUST00000113002.9	3391	8	13	6	-4	-2	multi-exon	FALSE	canonical	3	26	junction_7	27.2381784880513	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTCTGGTCTGGTAT	NA	False	NA	-5	True	AATAAA	-11	NA	35351265	35290196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35351206
ENSMUSG00000035778.18_13	chr2	-	1539	1	ISM	ENSMUSG00000035778.18	ENSMUST00000079424.11	3254	6	30910	6	21604	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTCTGGTCTGGTAT	NA	False	NA	-5	True	AATAAA	-11	NA	35291735	35290196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_35290200_35291700
ENSMUSG00000035778.18_14	chr2	-	3306	7	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	-7	-5	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	32.0646049233246	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTATATTCTGGTCTGG	NA	False	NA	-8	True	AATAAA	-8	NA	35351268	35290199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313243_35313425_35322525_35322645_35351206
ENSMUSG00000035778.18_2	chr2	-	3275	7	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	66	-46	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	32.273139846559	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAATAAGAATTCTTGTT	1231	False	NA	-49	True	ATTAAA	-20	NA	35335779	35290240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313243_35313425_35322525_35322645_35335707
ENSMUSG00000035778.18_3	chr2	-	3461	7	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	673	-2	combination_of_known_junctions	TRUE	canonical	3	18	junction_3	32.4846117415616	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTCTGGTCTGGTAT	NA	False	NA	-5	True	AATAAA	-11	NA	35352570	35290196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313243_35313425_35322525_35322645_35352356
ENSMUSG00000035778.18_4	chr2	-	3393	8	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	58	-2	combination_of_known_junctions	FALSE	canonical	3	25	junction_7	27.4531140198659	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTCTGGTCTGGTAT	1223	False	NA	-5	True	AATAAA	-11	NA	35335787	35290196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35335707
ENSMUSG00000035778.18_5	chr2	-	3572	9	NIC	ENSMUSG00000035778.18	novel	3606	9	NA	NA	664	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_8	26.4548554144603	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTCTGGTCTGGTAT	NA	False	NA	-5	True	AATAAA	-11	NA	35352579	35290196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35352356
ENSMUSG00000035778.18_7	chr2	-	3413	9	NIC	ENSMUSG00000035778.18	novel	3606	9	NA	NA	74	-2	combination_of_known_junctions	FALSE	canonical	3	25	junction_8	26.2678510731274	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTCTGGTCTGGTAT	1239	False	NA	-5	True	AATAAA	-11	NA	35335771	35290196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35335707
ENSMUSG00000035781.15_0	chr10	-	1808	8	FSM	ENSMUSG00000035781.15	ENSMUST00000045628.15	1898	8	88	2	1	-2	multi-exon	FALSE	canonical	3	145	junction_7	14.1608831731957	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCCTGTCCCCGTGTTTG	9770	False	NA	-10	True	AATAAA	-13	NA	79752752	79745887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749546_79752656
ENSMUSG00000035781.15_2	chr10	-	1987	6	ISM	ENSMUSG00000035781.15	ENSMUST00000045628.15	1898	8	3231	1	-1088	-1	intron_retention	FALSE	canonical	3	161	junction_1	8.30421579681068	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTGTCCCCGTGTTTGT	9592	False	NA	-9	True	AATAAA	-14	NA	79749609	79745886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058
ENSMUSG00000035790.16_0	chr16	+	1668	4	FSM	ENSMUSG00000035790.16	ENSMUST00000115168.9	1718	4	36	14	36	0	multi-exon	FALSE	canonical	3	74	junction_3	4.96655480858378	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGATAAGTCTTACTGGC	6528	False	NA	12	True	AATAAA	-12	NA	31918653	31926873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_31918930_31921784_31921863_31922701_31922866_31925723
ENSMUSG00000035790.16_4	chr16	+	657	1	ISM	ENSMUSG00000035790.16	ENSMUST00000115168.9	1718	4	7594	19	3516	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGTAAGTGATAAGTCTTA	NA	False	NA	7	True	AATAAA	-7	NA	31926211	31926868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_31926200_31926900
ENSMUSG00000035798.15_1	chr10	-	4489	17	NIC	ENSMUSG00000035798.15	novel	3635	17	NA	NA	-6	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	8.47030659126339	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGGTGTCTGCTCAGT	NA	False	NA	-3	True	AATAAA	-12	NA	110845870	110777642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_110780393_110781329_110781425_110782027_110782186_110783159_110783244_110784051_110784146_110785481_110785545_110786421_110786545_110790924_110791028_110792146_110792290_110796872_110796999_110803544_110803708_110804289_110804355_110809608_110809754_110810204_110810283_110817856_110817980_110821800_110821905_110845798
ENSMUSG00000035798.15_11	chr10	-	3802	11	ISM	ENSMUSG00000035798.15	ENSMUST00000220247.2	3635	17	42247	-797	98	-2	3prime_fragment	FALSE	non_canonical	0	0	junction_7	9.20054346220918	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATGTGGTGTCTGCTCA	NA	False	NA	-5	True	AATAAA	-10	NA	110803609	110777644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_110780393_110781329_110781425_110782027_110782186_110783159_110783244_110784051_110784146_110785481_110785545_110786421_110786545_110790924_110791028_110792146_110792290_110796872_110796999_110803544
ENSMUSG00000035798.15_4	chr10	-	1521	1	ISM	ENSMUSG00000035798.15	ENSMUST00000041723.15	4548	17	66764	2	4395	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGGTGTCTGCTCAGT	NA	False	NA	-3	True	AATAAA	-12	NA	110779163	110777642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_110777600_110779200
ENSMUSG00000035798.15_7	chr10	-	3836	11	NIC	ENSMUSG00000035798.15	novel	3635	17	NA	NA	-1310	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	10.1434708063858	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGGTGTCTGCTCAGT	4354	False	NA	-3	True	AATAAA	-12	NA	110798254	110777642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_110780393_110781329_110781425_110782027_110782186_110783159_110783244_110784051_110784146_110785481_110785545_110786421_110786545_110790924_110791028_110792146_110792290_110796872_110796999_110798157
ENSMUSG00000035798.15_8	chr10	-	3246	6	ISM	ENSMUSG00000035798.15	ENSMUST00000041723.15	4548	17	60381	2	-1988	0	3prime_fragment	FALSE	canonical	3	25	junction_1	1.83303027798234	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGGTGTCTGCTCAGT	NA	False	NA	-3	True	AATAAA	-12	NA	110785546	110777642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_110780393_110781329_110781425_110782027_110782186_110783159_110783244_110784051_110784146_110785481
ENSMUSG00000035798.15_9	chr10	-	4596	18	NIC	ENSMUSG00000035798.15	novel	3635	17	NA	NA	-6	-1	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	9.90473655522315	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTGGTGTCTGCTCAG	NA	False	NA	-4	True	AATAAA	-11	NA	110845870	110777643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_110780393_110781329_110781425_110782027_110782186_110783159_110783244_110784051_110784146_110785481_110785545_110786421_110786545_110790924_110791028_110792146_110792290_110796872_110796999_110798157_110798266_110803544_110803708_110804289_110804355_110809608_110809754_110810204_110810283_110817856_110817980_110821800_110821905_110845798
ENSMUSG00000035799.7_0	chr12	+	1453	2	FSM	ENSMUSG00000035799.7	ENSMUST00000049089.7	1628	2	172	3	172	-3	multi-exon	FALSE	canonical	3	12	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTTTAAAGTTTGGTC	NA	False	NA	NA	False	AATAAA	-22	NA	34007841	34009825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_34008638_34009168
ENSMUSG00000035824.8_0	chr8	-	1168	1	ISM	ENSMUSG00000035824.8	ENSMUST00000050211.7	2406	10	20688	18	3363	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCATGATGTAAATTCAT	NA	False	NA	-12	True	AATAAA	-12	NA	104954502	104953334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_104953300_104954500
ENSMUSG00000035824.8_1	chr8	-	2379	10	FSM	ENSMUSG00000035824.8	ENSMUST00000050211.7	2406	10	8	19	1	-6	multi-exon	FALSE	canonical	3	48	junction_4	11.1055541659718	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCATGATGTAAATTCA	NA	False	NA	-13	True	AATAAA	-11	NA	104975182	104953335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104963403_104963478_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
ENSMUSG00000035824.8_2	chr8	-	2289	9	FSM	ENSMUSG00000035824.8	ENSMUST00000211995.2	2312	9	18	5	0	-5	multi-exon	FALSE	canonical	3	18	junction_4	19.1012924955355	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCATGATGTAAATTCAT	NA	False	NA	-12	True	AATAAA	-12	NA	104975165	104953334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
ENSMUSG00000035824.8_3	chr8	-	2451	4	FSM	ENSMUSG00000035824.8	ENSMUST00000212165.2	775	4	-167	-1509	-167	-6	multi-exon	FALSE	canonical	3	63	junction_3	2.05480466765633	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCATGATGTAAATTCA	NA	False	NA	-13	True	AATAAA	-11	NA	104958433	104953335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791
ENSMUSG00000035828.12_3	chr15	+	2133	6	FSM	ENSMUSG00000035828.12	ENSMUST00000042818.11	2427	6	287	7	287	-7	multi-exon	TRUE	canonical	3	800	junction_3	47.4021096576935	1391	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGGATAACTTCTGTTTA	NA	False	NA	23	True	ATTAAA	-13	NA	88746675	88749922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_88746956_88747040_88747151_88747243_88747295_88747381_88747752_88748518_88748696_88748777
ENSMUSG00000035829.14_0	chr2	+	6357	2	NIC	ENSMUSG00000035829.14	novel	5463	3	NA	NA	30	0	intron_retention	FALSE	canonical	3	12	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTTCCTTTGTTCTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	28336841	28345517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_28337995_28340313
ENSMUSG00000035829.14_2	chr2	+	6434	3	FSM	ENSMUSG00000035829.14	ENSMUST00000189694.2	5463	3	-975	4	100	-4	multi-exon	FALSE	canonical	3	12	junction_2	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCACAGCTTCCTTTGTTC	NA	False	NA	NA	False	AATAAA	-10	NA	28336977	28345513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28337995_28338703_28338921_28340313
ENSMUSG00000035829.14_3	chr2	+	5327	3	NIC	ENSMUSG00000035829.14	novel	617	4	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	2	11	junction_1	0.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCACAGCTTCCTTTGTTC	NA	False	NA	NA	False	AATAAA	-10	NA	28336879	28345513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_28336909_28337896_28337995_28340313
ENSMUSG00000035829.14_4	chr2	+	5635	4	FSM	ENSMUSG00000035829.14	ENSMUST00000128199.8	617	4	-19	-4999	-19	0	multi-exon	FALSE	canonical	2	11	junction_1	2.16024689946929	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTTCCTTTGTTCTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	28336792	28345517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28336909_28337896_28337995_28338703_28338921_28340313
ENSMUSG00000035829.14_8	chr2	+	3257	1	ISM	ENSMUSG00000035829.14	ENSMUST00000189694.2	5463	3	4308	0	4308	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTTCCTTTGTTCTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	28342260	28345517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_28342300_28345500
ENSMUSG00000035834.12_0	chr13	-	3026	8	FSM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	25	3	14	-3	multi-exon	FALSE	canonical	3	220	junction_2	24.1119836409624	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAGATGATTTGCAGTGA	NA	False	NA	-9	True	AATAAA	-15	NA	81859107	81821964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
ENSMUSG00000035834.12_5	chr13	-	2126	1	ISM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	35045	0	11317	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGATTTGCAGTGAACA	NA	False	NA	-6	True	AATAAA	-18	NA	81824087	81821961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_81822000_81824100
ENSMUSG00000035840.8_0	chr13	+	4145	3	FSM	ENSMUSG00000035840.8	ENSMUST00000224300.2	4250	3	91	14	-38	-14	multi-exon	FALSE	canonical	3	66	junction_2	12	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCAATTTGAAAATGGAAG	380	False	NA	13	True	AATAAA	-15	NA	81805872	81820976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_81806056_81813123_81813389_81817279
ENSMUSG00000035840.8_2	chr13	+	4141	3	NIC	ENSMUSG00000035840.8	novel	4250	3	NA	NA	-38	-14	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	29.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCAATTTGAAAATGGAAG	380	False	NA	13	True	AATAAA	-15	NA	81805872	81820976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_81806056_81813127_81813389_81817279
ENSMUSG00000035840.8_3	chr13	+	4086	3	FSM	ENSMUSG00000035840.8	ENSMUST00000049055.8	2338	3	-75	-1673	-38	-14	multi-exon	FALSE	canonical	2	14	junction_2	38	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCAATTTGAAAATGGAAG	380	False	NA	13	True	AATAAA	-15	NA	81805872	81820976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_81806056_81813123_81813389_81817338
ENSMUSG00000035840.8_6	chr13	+	2990	1	ISM	ENSMUSG00000035840.8	ENSMUST00000224300.2	4250	3	12205	14	4674	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCAATTTGAAAATGGAAG	NA	False	NA	13	True	AATAAA	-15	NA	81817986	81820976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_81818000_81821000
ENSMUSG00000035842.11_0	chr17	+	3458	27	FSM	ENSMUSG00000035842.11	ENSMUST00000224497.2	4141	27	-42	725	0	60	multi-exon	FALSE	canonical	3	130	junction_22	18.327114778237	277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTGTCTCCGTGTTTTT	NA	False	NA	2	True	NA	NA	NA	66430565	66458444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
ENSMUSG00000035845.18_10	chr15	-	1405	7	ISM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	25	5702	-8	3662	5prime_fragment	FALSE	canonical	0	0	junction_2	14.8548533034381	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGAGTGTCCTTGTCATTT	9269	False	NA	NA	False	AAAAAG	-40	NA	88703496	88695148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
ENSMUSG00000035845.18_11	chr15	-	549	1	ISM	ENSMUSG00000035845.18	ENSMUST00000160222.2	2060	8	10377	2	10377	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTGTGTCTTGTTGTTGG	NA	False	NA	-2	True	AATAAA	-15	NA	88689997	88689448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_88689400_88690000
ENSMUSG00000035845.18_2	chr15	-	2103	10	FSM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	25	2	-8	-1	multi-exon	FALSE	canonical	0	0	junction_5	14.1691718917785	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTGTGTCTTGTTGTTGG	9269	False	NA	-2	True	AATAAA	-15	NA	88703496	88689448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88695499_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
ENSMUSG00000035845.18_6	chr15	-	1775	8	NIC	ENSMUSG00000035845.18	novel	2130	10	NA	NA	-8	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	14.7592931637622	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTGTGTCTTGTTGTTGG	9269	False	NA	-2	True	AATAAA	-15	NA	88703496	88689448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_88690258_88690601_88690678_88690760_88690925_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
ENSMUSG00000035845.18_9	chr15	-	2215	3	ISM	ENSMUSG00000035845.18	ENSMUST00000160222.2	2060	8	8279	7	8279	-6	3prime_fragment	FALSE	canonical	3	40	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATATTGTGTCTTGTT	NA	False	NA	-7	True	AATAAA	-10	NA	88692095	88689453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_88690258_88690601_88690678_88690760
ENSMUSG00000035847.16_2	chrX	-	2197	1	ISM	ENSMUSG00000035847.16	ENSMUST00000101509.9	4972	9	19738	81	15745	-81	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAGTTTTTCCTGTATAT	NA	False	NA	-19	True	AATAAA	-22	NA	69388952	69386755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_69386800_69389000
ENSMUSG00000035847.16_3	chrX	-	4871	9	FSM	ENSMUSG00000035847.16	ENSMUST00000101509.9	4972	9	20	81	20	-81	multi-exon	FALSE	canonical	3	25	junction_4	5.15842757049084	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAGTTTTTCCTGTATAT	NA	False	NA	-19	True	AATAAA	-22	NA	69408670	69386755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_69390280_69394532_69394707_69396749_69396877_69401872_69402044_69403554_69403756_69404648_69404738_69406582_69406761_69407407_69407545_69408400
ENSMUSG00000035847.16_6	chrX	-	4076	5	ISM	ENSMUSG00000035847.16	ENSMUST00000101509.9	4972	9	5056	81	1063	-81	3prime_fragment	TRUE	canonical	3	25	junction_4	3.96074487943871	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAGTTTTTCCTGTATAT	NA	False	NA	-19	True	AATAAA	-22	NA	69403634	69386755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_69390280_69394532_69394707_69396749_69396877_69401872_69402044_69403554
ENSMUSG00000035847.16_7	chrX	-	4759	10	NNC	ENSMUSG00000035847.16	novel	4972	9	NA	NA	6	-89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	11.2062592738871	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTGACAGTTTTTC	NA	False	NA	-27	True	AATAAA	-14	NA	69408684	69386763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_69390280_69394532_69394707_69396749_69396877_69401872_69402044_69403554_69403756_69404648_69404738_69406582_69406761_69407407_69407545_69408400_69408494_69408611
ENSMUSG00000035847.16_9	chrX	-	4421	7	ISM	ENSMUSG00000035847.16	ENSMUST00000101509.9	4972	9	1971	83	1971	-83	3prime_fragment	FALSE	canonical	3	25	junction_4	5.06622805119022	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACAGTTTTTCCTGTAT	NA	False	NA	-21	True	AATAAA	-20	NA	69406719	69386757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_69390280_69394532_69394707_69396749_69396877_69401872_69402044_69403554_69403756_69404648_69404738_69406582
ENSMUSG00000035849.15_0	chr11	-	3354	6	FSM	ENSMUSG00000035849.15	ENSMUST00000038214.7	2042	6	-196	-1116	-196	-13	multi-exon	FALSE	canonical	0	0	junction_5	2.24499443206436	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAACATGAACTCTAAG	9979	False	NA	NA	False	AATAAA	-6	NA	99135107	99123599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_99125974_99126962_99127096_99127290_99127368_99129359_99129581_99131318_99131448_99134687
ENSMUSG00000035849.15_2	chr11	-	1663	6	FSM	ENSMUSG00000035849.15	ENSMUST00000103132.10	3072	6	-104	1513	-86	-384	multi-exon	FALSE	canonical	1	2	junction_1	1.35646599662505	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCTTTATCTTAAAGCTT	6710	False	NA	NA	False	AATAAA	-14	NA	99134997	99125099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_99125974_99126962_99127096_99127290_99127368_99129359_99129581_99131318_99131448_99134768
ENSMUSG00000035851.15_0	chr5	+	3309	18	NIC	ENSMUSG00000035851.15	novel	2960	17	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_14	69.4558185225946	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAACTTGCTGTATTTCCT	NA	False	NA	8	True	AATAAA	-16	NA	86952106	86984513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_86952451_86957163_86957200_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979631_86979696_86979806_86979870_86981366_86981502_86983542
ENSMUSG00000035851.15_1	chr5	+	3291	18	NIC	ENSMUSG00000035851.15	novel	3269	17	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	100	junction_1	58.4142230393181	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAACTTGCTGTATTTCCT	NA	False	NA	8	True	AATAAA	-16	NA	86952100	86984513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_86952451_86957163_86957200_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
ENSMUSG00000035851.15_15	chr5	+	4622	17	NIC	ENSMUSG00000035851.15	novel	3269	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_11	68.274234479414	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAACTTGCTGTATTTCCT	NA	False	NA	8	True	AATAAA	-16	NA	86952091	86984513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_86952451_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86977339_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
ENSMUSG00000035851.15_2	chr5	+	3249	17	FSM	ENSMUSG00000035851.15	ENSMUST00000120498.8	3269	17	15	5	15	0	multi-exon	FALSE	canonical	3	145	junction_1	43.5918122329182	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAACTTGCTGTATTTCCT	NA	False	NA	8	True	AATAAA	-16	NA	86952106	86984513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_86952451_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
ENSMUSG00000035851.15_3	chr5	+	3276	17	FSM	ENSMUSG00000035851.15	ENSMUST00000038384.8	2960	17	-321	5	10	-2	multi-exon	FALSE	canonical	3	72	junction_13	59.5315042645489	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTAACTTGCTGTATTTC	NA	False	NA	6	True	AATAAA	-14	NA	86952101	86984511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_86952451_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979631_86979696_86979806_86979870_86981366_86981502_86983542
ENSMUSG00000035852.12_1	chr10	+	2434	5	FSM	ENSMUSG00000035852.12	ENSMUST00000219305.2	2569	5	98	37	28	0	multi-exon	FALSE	canonical	2	3	junction_1	3.26917420765551	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGGAGCAGAGGATGTG	NA	False	NA	3	True	AATAAA	-17	NA	79658489	79666286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79658570_79661529_79663269_79663711_79663846_79665226_79665266_79665844
ENSMUSG00000035852.12_2	chr10	+	2409	5	FSM	ENSMUSG00000035852.12	ENSMUST00000046833.5	2414	5	5	0	4	0	multi-exon	FALSE	canonical	1	2	junction_1	3.57071421427143	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGGAGCAGAGGATGTG	NA	False	NA	3	True	AATAAA	-17	NA	79658465	79666286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79658521_79661529_79663269_79663711_79663846_79665226_79665266_79665844
ENSMUSG00000035852.12_4	chr10	+	2435	5	NIC	ENSMUSG00000035852.12	novel	2569	5	NA	NA	31	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	4.24264068711928	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTGGAGCAGAGGATGT	NA	False	NA	2	True	AATAAA	-16	NA	79658492	79666285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_79658575_79661529_79663269_79663711_79663846_79665226_79665266_79665844
ENSMUSG00000035863.15_0	chr10	+	2490	8	FSM	ENSMUSG00000035863.15	ENSMUST00000105379.3	2519	8	20	9	20	-9	multi-exon	FALSE	canonical	3	161	junction_7	12.869835005206	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79629425	79656721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79629575_79642473_79642526_79642867_79642949_79643411_79643543_79645303_79645455_79648176_79648199_79651018_79651076_79654874
ENSMUSG00000035863.15_15	chr10	+	1506	1	ISM	ENSMUSG00000035863.15	ENSMUST00000046945.13	2651	9	25810	9	4712	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79655215	79656721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_79655200_79656700
ENSMUSG00000035868.10_14	chr17	+	2713	6	NNC	ENSMUSG00000035868.10	novel	4354	6	NA	NA	12	813	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	8.84533775499839	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCCATGTCTTGCTCTT	NA	False	NA	NA	False	TATAAA	-14	NA	21869556	21882269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_21869695_21871186_21871266_21875011_21875249_21876434_21876528_21877828_21877956_21880230
ENSMUSG00000035873.9_14	chr10	+	2181	6	ISM	ENSMUSG00000035873.9	ENSMUST00000095313.5	1745	7	592	-589	-104	589	3prime_fragment	FALSE	canonical	3	675	junction_4	49.1634010214916	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATCCTTGGTATTTAGG	6190	False	NA	12	True	AATAAA	-14	NA	108168573	108250690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_108169173_108218590_108218723_108227558_108227594_108245323_108245472_108247824_108247930_108249528
ENSMUSG00000035873.9_2	chr10	+	2313	7	FSM	ENSMUSG00000035873.9	ENSMUST00000095313.5	1745	7	21	-589	21	589	multi-exon	FALSE	canonical	3	604	junction_1	62.4179461373089	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATCCTTGGTATTTAGG	5619	False	NA	12	True	AATAAA	-14	NA	108168002	108250690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_108168110_108168548_108169173_108218590_108218723_108227558_108227594_108245323_108245472_108247824_108247930_108249528
ENSMUSG00000035877.18_1	chr2	-	5095	4	FSM	ENSMUSG00000035877.18	ENSMUST00000109460.8	4480	4	-5	-610	3	610	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAAGCCTGAACGTT	NA	False	NA	NA	False	AATAAA	-25	NA	160714915	160611756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_160613546_160621320_160624300_160674216_160674339_160714710
ENSMUSG00000035878.14_0	chr9	+	5100	5	FSM	ENSMUSG00000035878.14	ENSMUST00000039742.8	5110	5	0	10	0	-10	multi-exon	FALSE	canonical	2	6	junction_2	1.29903810567666	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTTTACCTTTTGG	NA	False	NA	3	True	ATTAAA	-16	NA	54824566	54857198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_54825143_54827757_54828109_54829478_54829619_54844422_54844607_54853349
ENSMUSG00000035878.14_2	chr9	+	3090	1	ISM	ENSMUSG00000035878.14	ENSMUST00000039742.8	5110	5	29542	10	29478	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTTTACCTTTTGG	NA	False	NA	3	True	ATTAAA	-16	NA	54854108	54857198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_54854100_54857200
ENSMUSG00000035885.6_0	chr19	-	493	2	FSM	ENSMUSG00000035885.6	ENSMUST00000039758.6	550	2	47	10	-26	-10	multi-exon	FALSE	canonical	3	12296	junction_1	0	2029	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGAAATGCATCATGT	7413	False	NA	NA	False	AATAAA	-16	NA	7194934	7192527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_7192850_7194763
ENSMUSG00000035890.10_0	chr10	-	1562	9	FSM	ENSMUSG00000035890.10	ENSMUST00000047203.9	1639	9	42	35	0	-8	multi-exon	FALSE	canonical	3	909	junction_4	92.4302946819927	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGCAGAGCCCATGGC	NA	False	NA	-15	True	AATACA	-8	NA	79602744	79594383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79595071_79596624_79596741_79596822_79596917_79597263_79597334_79597398_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602586
ENSMUSG00000035890.10_1	chr10	-	1626	8	NIC	ENSMUSG00000035890.10	novel	1639	9	NA	NA	1	-8	intron_retention	FALSE	canonical	3	909	junction_5	92.3283846509019	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGCAGAGCCCATGGC	NA	False	NA	-15	True	AATACA	-8	NA	79602743	79594383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79595071_79596624_79596741_79596822_79596917_79597263_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602586
ENSMUSG00000035890.10_9	chr10	-	1493	8	NIC	ENSMUSG00000035890.10	novel	1639	9	NA	NA	-1	-8	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	357.615915273835	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGCAGAGCCCATGGC	NA	False	NA	-15	True	AATACA	-8	NA	79602745	79594383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79595071_79596624_79596741_79596822_79596917_79597398_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602586
ENSMUSG00000035891.17_0	chr15	-	1081	1	ISM	ENSMUSG00000035891.17	ENSMUST00000150767.8	3896	10	19255	5	12235	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTATGGCCTCCCCTCAT	9778	False	NA	-18	True	AATAAA	-13	NA	86024414	86023333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_86023300_86024400
ENSMUSG00000035891.17_1	chr15	-	3357	8	FSM	ENSMUSG00000035891.17	ENSMUST00000156546.2	2162	8	-7	-1188	-7	-4	multi-exon	FALSE	canonical	3	9	junction_7	5.62429133857986	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTATGGCCTCCCCTCAT	NA	False	NA	-18	True	AATAAA	-13	NA	86036656	86023333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_86025814_86026882_86027092_86028722_86028929_86029688_86029766_86030485_86030592_86033478_86033632_86035735_86035811_86036605
ENSMUSG00000035891.17_11	chr15	-	3838	11	NIC	ENSMUSG00000035891.17	novel	4518	13	NA	NA	441	-2	combination_of_known_splicesites	TRUE	canonical	0	0	junction_10	7.37902432574931	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATGGCCTCCCCTCATCC	NA	False	NA	-16	True	AATAAA	-15	NA	86069901	86023331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_86025814_86026882_86027092_86028722_86028929_86029688_86029766_86030485_86030592_86033478_86033632_86035735_86035811_86039174_86039321_86040788_86040853_86043294_86043421_86069707
ENSMUSG00000035891.17_3	chr15	-	1868	13	FSM	ENSMUSG00000035891.17	ENSMUST00000044332.16	4518	13	381	2269	381	-1077	multi-exon	FALSE	canonical	3	13	junction_10	4.62105687767059	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTCTGTATCCATACC	NA	False	NA	NA	False	NA	NA	NA	86069961	86025598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_86025814_86026882_86027092_86028722_86028929_86029688_86029766_86030485_86030592_86033478_86033632_86035735_86035811_86039174_86039321_86040788_86040853_86043294_86043421_86049168_86049292_86050022_86050137_86069707
ENSMUSG00000035891.17_4	chr15	-	2761	3	NNC	ENSMUSG00000035891.17	novel	2162	8	NA	NA	8763	-4	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	5.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTATGGCCTCCCCTCAT	6306	False	NA	-18	True	AATAAA	-13	NA	86027886	86023333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_86025814_86026882_86027092_86027814
ENSMUSG00000035898.14_0	chr5	-	5584	33	FSM	ENSMUSG00000035898.14	ENSMUST00000039373.14	6590	33	43	963	-21	-963	multi-exon	FALSE	canonical	3	104	junction_13	11.1589632554956	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATACAAAAAAAAAAAAAAAA	7131	False	NA	NA	False	NA	NA	NA	86320619	86258108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_86260648_86265882_86265978_86267191_86267280_86268386_86268515_86270163_86270358_86272169_86272288_86274327_86274400_86275558_86275629_86276534_86276599_86276686_86276739_86279071_86279201_86280300_86280382_86280476_86280567_86282832_86282939_86284167_86284350_86285675_86285754_86288214_86288296_86289406_86289486_86290263_86290332_86292193_86292338_86294933_86295001_86295663_86295741_86296727_86296791_86297868_86297973_86300425_86300550_86300684_86300808_86302212_86302294_86307062_86307175_86308137_86308233_86311937_86311967_86312555_86312651_86318413_86318477_86320526
ENSMUSG00000035898.14_1	chr5	-	2366	1	ISM	ENSMUSG00000035898.14	ENSMUST00000039373.14	6590	33	61145	6	60853	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACATTTCTCTTGAGTT	NA	False	NA	-10	True	NA	NA	NA	86259517	86257151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_86257200_86259500
ENSMUSG00000035900.19_1	chr15	+	4141	19	NIC	ENSMUSG00000035900.19	novel	4292	19	NA	NA	57	1	combination_of_known_junctions	FALSE	canonical	3	47	junction_12	6.93265666213622	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGTCTGAGGAATCC	NA	False	NA	NA	False	AATAAA	-14	NA	85942984	86021820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_85943163_85975513_85975725_85984980_85985102_86002663_86002785_86006379_86006454_86009324_86009458_86010057_86010084_86011189_86011282_86011750_86011843_86012865_86012915_86013850_86013923_86014347_86014392_86014457_86014568_86014703_86014859_86016054_86016200_86017015_86017110_86017875_86017961_86019081_86019151_86019550
ENSMUSG00000035900.19_24	chr15	+	1905	1	ISM	ENSMUSG00000035900.19	ENSMUST00000088931.10	4115	19	78021	14	60983	2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGAGTCTGAGGAATCCT	NA	False	NA	NA	False	AATAAA	-15	NA	86019916	86021821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_86019900_86021800
ENSMUSG00000035901.15_0	chr7	-	4953	23	FSM	ENSMUSG00000035901.15	ENSMUST00000080437.13	5004	23	44	7	-26	-7	multi-exon	FALSE	canonical	3	123	junction_12	18.0282148014056	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATCTCACTGGTCAC	NA	False	NA	NA	False	AATAAA	-8	NA	109559633	109492993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_109494023_109495449_109495619_109496153_109496278_109497110_109497194_109497714_109497897_109498250_109498370_109498930_109499077_109500266_109500389_109504376_109504506_109504902_109504988_109507537_109507623_109511121_109511275_109513927_109514060_109515417_109515512_109516591_109516743_109517800_109518036_109518468_109518685_109520400_109520719_109526033_109526222_109532819_109533478_109533899_109534010_109534688_109534761_109559280
ENSMUSG00000035901.15_16	chr7	-	3910	20	ISM	ENSMUSG00000035901.15	ENSMUST00000106722.2	4862	22	26638	7	-8712	-7	3prime_fragment	FALSE	canonical	3	123	junction_12	18.9176667785298	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATCTCACTGGTCAC	1893	False	NA	NA	False	AATAAA	-8	NA	109532969	109492993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_109494023_109495449_109495619_109496153_109496278_109497110_109497194_109497714_109497897_109498250_109498370_109498930_109499077_109500266_109500389_109504376_109504506_109504902_109504988_109507537_109507623_109511121_109511275_109513927_109514060_109515417_109515512_109516591_109516743_109517800_109518036_109518468_109518685_109520400_109520719_109526033_109526222_109532819
ENSMUSG00000035901.15_6	chr7	-	3102	17	ISM	ENSMUSG00000035901.15	ENSMUST00000106722.2	4862	22	41075	7	1325	-7	3prime_fragment	FALSE	canonical	3	123	junction_12	18.4556055170238	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATCTCACTGGTCAC	7217	False	NA	NA	False	AATAAA	-8	NA	109518532	109492993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_109494023_109495449_109495619_109496153_109496278_109497110_109497194_109497714_109497897_109498250_109498370_109498930_109499077_109500266_109500389_109504376_109504506_109504902_109504988_109507537_109507623_109511121_109511275_109513927_109514060_109515417_109515512_109516591_109516743_109517800_109518036_109518468
ENSMUSG00000035910.16_2	chr13	+	2097	10	FSM	ENSMUSG00000035910.16	ENSMUST00000069614.7	6634	10	-200	4737	49	434	multi-exon	TRUE	canonical	3	14	junction_2	2.86744175568088	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAGTTTCAGAGATAAT	NA	False	NA	NA	False	AATAAA	-21	NA	25240035	25389952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_25240547_25245217_25245273_25286315_25286393_25286503_25286636_25291573_25291721_25294049_25294105_25303229_25303390_25371658_25371760_25386147_25386451_25389396
ENSMUSG00000035914.12_0	chr9	-	3284	8	FSM	ENSMUSG00000035914.12	ENSMUST00000165365.3	3603	8	315	4	315	-2	multi-exon	FALSE	canonical	3	53	junction_5	14.4716471567189	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCCTCTGGCCTGTGAT	417	False	NA	-7	True	AATAAA	-15	NA	58462405	58431584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_58433645_58434801_58434838_58435734_58435777_58437878_58438014_58442738_58443036_58444551_58444891_58447949_58448224_58462304
ENSMUSG00000035914.12_3	chr9	-	1626	1	ISM	ENSMUSG00000035914.12	ENSMUST00000165365.3	3603	8	29510	4	11544	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCCTCTGGCCTGTGAT	NA	False	NA	-7	True	AATAAA	-15	NA	58433210	58431584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_58431600_58433200
ENSMUSG00000035914.12_9	chr9	-	3363	9	NIC	ENSMUSG00000035914.12	novel	3603	8	NA	NA	290	-2	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	34.2360829389111	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCCTCTGGCCTGTGAT	392	False	NA	-7	True	AATAAA	-15	NA	58462430	58431584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_58433645_58434801_58434838_58435734_58435777_58437878_58438014_58442738_58443036_58443841_58443896_58444551_58444891_58447949_58448224_58462304
ENSMUSG00000035919.17_1	chr9	+	3319	22	FSM	ENSMUSG00000035919.17	ENSMUST00000039798.16	3382	22	57	6	41	0	multi-exon	FALSE	canonical	3	30	junction_1	13.43515542748	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAACTGGACTGAAT	NA	False	NA	-3	True	AATAAA	-14	NA	22387067	22799570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_22387352_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
ENSMUSG00000035919.17_2	chr9	+	3396	23	FSM	ENSMUSG00000035919.17	ENSMUST00000150395.8	3425	23	29	0	20	0	multi-exon	FALSE	canonical	3	14	junction_1	19.2294217582595	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAACTGGACTGAAT	NA	False	NA	-3	True	AATAAA	-14	NA	22387046	22799570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_22387352_22387865_22387922_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
ENSMUSG00000035919.17_3	chr9	+	3540	23	NIC	ENSMUSG00000035919.17	novel	3425	23	NA	NA	11	0	intron_retention	FALSE	canonical	3	12	junction_1	19.496609156339	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAACTGGACTGAAT	NA	False	NA	-3	True	AATAAA	-14	NA	22387037	22799570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_22387487_22387865_22387922_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
ENSMUSG00000035919.17_4	chr9	+	3480	22	FSM	ENSMUSG00000035919.17	ENSMUST00000147712.8	3495	22	15	0	15	0	multi-exon	FALSE	canonical	3	19	junction_1	15.2048745018425	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAACTGGACTGAAT	NA	False	NA	-3	True	AATAAA	-14	NA	22387041	22799570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_22387487_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
ENSMUSG00000035929.12_2	chr17	+	1415	8	Fusion	ENSMUSG00000079507.11_ENSMUSG00000035929.12_ENSMUSG00000055413.13	novel	2024	8	NA	NA	18	770	multi-exon	FALSE	non_canonical	0	0	junction_1	1.35526185435788	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGATCTGTGTCACTGAGC	5440	False	NA	NA	False	AATAAA	-20	NA	35539551	35617546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_+_35539602_35539796_35539978_35578439_35578502_35599336_35599613_35601833_35602110_35616454_35616572_35616743_35616777_35617126
ENSMUSG00000035933.6_0	chr12	+	5071	22	ISM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	9	9302	9	-741	5prime_fragment	FALSE	canonical	3	60	junction_7	21.3659402170966	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAATGATGTCCATCTTT	NA	False	NA	NA	False	ACTAAA	-18	NA	31704876	31978327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_31704983_31710715_31710856_31715463_31715522_31719768_31719824_31720314_31720385_31735651_31735773_31810845_31810977_31840845_31841012_31851981_31852095_31852404_31852483_31870123_31870206_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643
ENSMUSG00000035933.6_1	chr12	+	2986	23	FSM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	9	2	9	-2	multi-exon	FALSE	canonical	3	25	junction_22	24.2086317506725	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTGGTGTTTCTTCCTTC	NA	False	NA	10	True	AATAAA	-17	NA	31704876	31987627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_31704983_31710715_31710856_31715463_31715522_31719768_31719824_31720314_31720385_31735651_31735773_31810845_31810977_31840845_31841012_31851981_31852095_31852404_31852483_31870123_31870206_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643_31975791_31987175
ENSMUSG00000035933.6_24	chr12	+	1145	5	ISM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	245768	0	6516	0	3prime_fragment	FALSE	canonical	3	25	junction_4	29.4819860253681	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTGTTTCTTCCTTCCA	1038	False	NA	12	True	AATAAA	-19	NA	31950635	31987629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_31950973_31969649_31969777_31970552_31970633_31975643_31975791_31987175
ENSMUSG00000035933.6_25	chr12	+	2616	4	ISM	ENSMUSG00000035933.6	ENSMUST00000219672.2	750	5	6540	-1718	6540	-1329	3prime_fragment	FALSE	canonical	3	90	junction_2	3.77123616632825	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTTGAGTTTGTTCTGT	1062	False	NA	NA	False	AATAAA	-14	NA	31950659	31977739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_31950973_31969649_31969777_31970552_31970633_31975643
ENSMUSG00000035933.6_26	chr12	+	2901	1	ISM	ENSMUSG00000035933.6	ENSMUST00000218428.2	3610	3	6475	21	454	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGCTTTACTCCCCCC	NA	False	NA	-10	True	ATTAAA	-37	NA	31976146	31979047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_31976100_31979000
ENSMUSG00000035934.17_0	chr9	-	3486	13	FSM	ENSMUSG00000035934.17	ENSMUST00000039674.13	3632	13	142	4	1	-1	multi-exon	FALSE	canonical	2	8	junction_11	4.65698400254929	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATACTGATGCACAGTTC	NA	False	NA	-9	True	AGTAAA	-15	NA	37058561	36802281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36898463_36898569_36994502_36994573_37058536
ENSMUSG00000035934.17_15	chr9	-	3461	12	ISM	ENSMUSG00000035934.17	ENSMUST00000039674.13	3632	13	64128	7	0	-4	3prime_fragment	FALSE	canonical	2	8	junction_11	4.85832335123178	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGAAATACTGATGCACAG	NA	False	NA	-12	True	AGTAAA	-12	NA	36994575	36802284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36898463_36898569_36994502
ENSMUSG00000035934.17_6	chr9	-	3380	12	FSM	ENSMUSG00000035934.17	ENSMUST00000080754.12	3431	12	49	2	1	-2	multi-exon	FALSE	canonical	0	0	junction_10	6.78232998312527	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAAATACTGATGCACAGTT	NA	False	NA	-10	True	AGTAAA	-14	NA	37058561	36802282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36994502_36994573_37058536
ENSMUSG00000035936.7_0	chr13	-	4456	4	ISM	ENSMUSG00000035936.7	ENSMUST00000037615.7	5647	10	21769	92	21769	-92	3prime_fragment	FALSE	canonical	3	44	junction_1	4.18993502999218	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATTGCTTCATTTTTCT	NA	False	NA	-91	True	TATAAA	-6	NA	25099875	25091653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_25095750_25096230_25096290_25097726_25097897_25099744
ENSMUSG00000035936.7_2	chr13	-	1709	10	FSM	ENSMUSG00000035936.7	ENSMUST00000037615.7	5647	10	19	3919	19	-3919	multi-exon	FALSE	canonical	3	44	junction_1	4.49965705140369	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACACATGAGTAGGTTAT	NA	False	NA	16	True	AATAAA	-38	NA	25121625	25095480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_25095750_25096230_25096290_25097726_25097897_25099744_25099904_25102483_25102628_25103661_25103806_25107949_25108067_25109960_25110132_25111523_25111608_25121233
ENSMUSG00000035936.7_3	chr13	-	3404	1	ISM	ENSMUSG00000035936.7	ENSMUST00000037615.7	5647	10	26663	16	26663	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTATTTCTGGGTTAAAGT	NA	False	NA	-15	True	AATAAA	-15	NA	25094981	25091577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_25091600_25095000
ENSMUSG00000035941.16_0	chr9	-	5612	29	NNC	ENSMUSG00000035941.16	novel	5650	29	NA	NA	9	-6	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_19	38.9746614442496	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCACTTCCTCTAGCGTG	NA	False	NA	-13	True	AATAAA	-10	NA	85631358	85569418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_85570568_85572261_85572395_85572746_85572819_85579171_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85604327_85604503_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
ENSMUSG00000035941.16_1	chr9	-	5595	29	FSM	ENSMUSG00000035941.16	ENSMUST00000039213.15	5650	29	36	19	16	-19	multi-exon	FALSE	canonical	3	145	junction_19	26.8952047922362	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTAAAGTCAATCCAC	NA	False	NA	-26	True	NA	NA	NA	85631351	85569431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_85570568_85572261_85572395_85572746_85572819_85579171_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85604327_85604506_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
ENSMUSG00000035941.16_25	chr9	-	4999	28	ISM	ENSMUSG00000035941.16	ENSMUST00000039213.15	5650	29	5721	1	5701	-1	3prime_fragment	FALSE	canonical	3	145	junction_19	27.3706961339808	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTCTAGCGTGTGTTT	NA	False	NA	-8	True	AATAAA	-15	NA	85625666	85569413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_85570568_85572261_85572395_85572746_85572819_85579171_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85604327_85604506_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427
ENSMUSG00000035941.16_5	chr9	-	3092	18	ISM	ENSMUSG00000035941.16	ENSMUST00000039213.15	5650	29	28368	6	-143	-6	3prime_fragment	FALSE	canonical	3	205	junction_15	21.2651736991906	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCACTTCCTCTAGCGTG	NA	False	NA	-13	True	AATAAA	-10	NA	85603019	85569418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_85570568_85572261_85572395_85572746_85572819_85579171_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796
ENSMUSG00000035944.18_0	chr15	+	2621	14	FSM	ENSMUSG00000035944.18	ENSMUST00000146088.8	3749	14	30	1098	-8	-9	multi-exon	FALSE	canonical	2	10	junction_3	3.06729262113491	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85716536	85741925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_85716621_85717347_85717426_85718690_85718773_85720220_85720393_85722906_85723081_85725665_85725742_85728652_85728773_85730531_85730592_85731835_85731875_85735717_85735800_85737020_85737187_85737785_85737946_85738176_85738251_85740671
ENSMUSG00000035944.18_1	chr15	+	2720	15	NIC	ENSMUSG00000035944.18	novel	3749	14	NA	NA	-14	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	5.21575321815105	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85716530	85741925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_85716621_85717176_85717270_85717347_85717426_85718690_85718773_85720220_85720393_85722906_85723081_85725665_85725742_85728652_85728773_85730531_85730592_85731835_85731875_85735717_85735800_85737020_85737187_85737785_85737946_85738176_85738251_85740671
ENSMUSG00000035944.18_3	chr15	+	3389	11	ISM	ENSMUSG00000035944.18	ENSMUST00000146088.8	3749	14	3798	2	3760	-2	3prime_fragment	FALSE	canonical	2	10	junction_6	3.12409987036266	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAGAAAATGTAAATAGCA	NA	False	NA	NA	False	TTTAAA	-4	NA	85720304	85743021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_85720393_85722906_85723081_85725665_85725742_85728652_85728773_85730531_85730592_85731835_85731875_85735717_85735800_85737020_85737187_85737785_85737946_85738176_85738251_85740671
ENSMUSG00000035944.18_5	chr15	+	2887	6	NNC	ENSMUSG00000035944.18	novel	3749	14	NA	NA	18934	-8	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	5.23832034148352	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCCAAGAGAAAATGTAA	562	False	NA	NA	False	NA	NA	NA	85735478	85743015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_85735540_85735717_85735800_85737020_85737187_85737785_85737946_85738176_85738251_85740671
ENSMUSG00000035944.18_7	chr15	+	1443	3	ISM	ENSMUSG00000035944.18	ENSMUST00000133158.2	2369	13	21286	9	21286	-9	3prime_fragment	FALSE	canonical	3	13	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAACCAAAAAAAAAAA	1022	False	NA	NA	False	NA	NA	NA	85737830	85741925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_85737946_85738176_85738251_85740671
ENSMUSG00000035944.18_8	chr15	+	1255	1	NIC	ENSMUSG00000035944.18	novel	3749	14	NA	NA	24126	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAACCAAAAAAAAAAA	3862	False	NA	NA	False	NA	NA	NA	85740670	85741925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_85740700_85741900
ENSMUSG00000035946.8_0	chr5	+	1651	2	FSM	ENSMUSG00000035946.8	ENSMUST00000040477.4	1665	2	-8	22	-8	-22	multi-exon	FALSE	canonical	3	51	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATATTTTTTAATTC	NA	False	NA	NA	False	AATAAA	-8	NA	75236253	75238532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_75236999_75237626
ENSMUSG00000035948.14_1	chr10	-	2320	13	ISM	ENSMUSG00000035948.14	ENSMUST00000165067.9	4696	16	-86	14609	-1	-14609	5prime_fragment	TRUE	canonical	0	0	junction_2	0.721687836487032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGTGTAGCTGAATTATT	NA	False	NA	NA	False	TATAAA	-8	NA	106959530	106783986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_106784640_106787834_106787917_106798822_106798887_106802808_106802905_106824666_106824771_106840524_106840677_106859514_106859611_106859717_106859799_106881073_106881215_106885224_106885360_106889188_106889378_106920667_106920813_106959148
ENSMUSG00000035949.16_0	chr2	-	1893	8	FSM	ENSMUSG00000035949.16	ENSMUST00000113080.9	1923	8	29	1	0	-1	multi-exon	FALSE	canonical	3	239	junction_7	72.0294724259395	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGCCTTTGTTCTTTGAA	9230	False	NA	-7	True	ATTAAA	-11	NA	34716213	34695353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973_34716083_34716183
ENSMUSG00000035949.16_3	chr2	-	1809	8	FSM	ENSMUSG00000035949.16	ENSMUST00000091020.10	1838	8	26	3	-2	-1	multi-exon	FALSE	canonical	3	82	junction_6	107.582336764329	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGCCTTTGTTCTTTGAA	9222	False	NA	-7	True	ATTAAA	-11	NA	34716221	34695353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34712988_34715973_34716083_34716183
ENSMUSG00000035949.16_32	chr2	-	2403	4	ISM	ENSMUSG00000035949.16	ENSMUST00000091020.10	1838	8	27	5832	-1	668	5prime_fragment	FALSE	canonical	3	82	junction_2	161.085898410341	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGATGCAGTGACAGTG	9223	False	NA	-10	True	AATAAA	-14	NA	34716220	34701182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_34703022_34712569_34712988_34715973_34716083_34716183
ENSMUSG00000035949.16_33	chr2	-	2488	4	FSM	ENSMUSG00000035949.16	ENSMUST00000131534.8	1930	4	110	-668	0	668	multi-exon	FALSE	canonical	3	239	junction_3	100.641277151409	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGATGCAGTGACAGTG	9230	False	NA	-10	True	AATAAA	-14	NA	34716213	34701182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34703022_34712569_34713080_34715973_34716083_34716183
ENSMUSG00000035949.16_42	chr2	-	166	1	FSM	ENSMUSG00000035949.16	ENSMUST00000201806.2	4405	1	4241	-2	954	2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	34711978	34711812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34711800_34712000
ENSMUSG00000035949.16_6	chr2	-	1866	7	FSM	ENSMUSG00000035949.16	ENSMUST00000028220.10	2030	7	0	164	0	-1	multi-exon	FALSE	canonical	3	260	junction_4	71.5238887831658	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGCCTTTGTTCTTTGAA	9358	False	NA	-7	True	ATTAAA	-11	NA	34716085	34695353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973
ENSMUSG00000035953.15_0	chr14	-	1598	7	FSM	ENSMUSG00000035953.15	ENSMUST00000160835.9	2755	7	7	1150	-4	-1	multi-exon	FALSE	canonical	3	698	junction_6	55.5447767321305	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTTTCCCACTTAACAA	NA	False	NA	-12	True	AATAAA	-15	NA	51168299	51164674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168069
ENSMUSG00000035953.15_1	chr14	-	1578	7	FSM	ENSMUSG00000035953.15	ENSMUST00000049312.14	1594	7	13	3	-5	-1	multi-exon	FALSE	canonical	3	258	junction_6	212.437441772082	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTTTCCCACTTAACAA	NA	False	NA	-12	True	AATAAA	-15	NA	51168300	51164674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168090
ENSMUSG00000035953.15_5	chr14	-	1492	6	FSM	ENSMUSG00000035953.15	ENSMUST00000162957.8	1465	6	-30	3	-4	-1	multi-exon	FALSE	canonical	3	65	junction_3	295.870647412007	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTTTCCCACTTAACAA	NA	False	NA	-12	True	AATAAA	-15	NA	51168299	51164674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51167040_51167148_51167590_51167782_51168069
ENSMUSG00000035953.15_6	chr14	-	3605	1	NIC	ENSMUSG00000035953.15	novel	2755	7	NA	NA	-8	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTTTCCCACTTAACAAC	NA	False	NA	-11	True	AATAAA	-16	NA	51168278	51164673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_51164700_51168300
ENSMUSG00000035954.11_1	chr12	+	8426	52	NIC	ENSMUSG00000035954.11	novel	8552	53	NA	NA	-1	-16	combination_of_known_splicesites	FALSE	canonical	2	5	junction_26	3.40341552215641	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGATTAATCTTAATGTT	NA	False	NA	1	True	AATAAA	-4	NA	40496033	40896857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_40496394_40671219_40671304_40673801_40673843_40676335_40676392_40681520_40681618_40686081_40686231_40690359_40690445_40699336_40699489_40718404_40718487_40719006_40719068_40722739_40722873_40726700_40726790_40742912_40743039_40752859_40752985_40754329_40754493_40760793_40760901_40775645_40775803_40779847_40779946_40780042_40780127_40780286_40780388_40781823_40781906_40783176_40783348_40787366_40787560_40795657_40795786_40797978_40798114_40805765_40805865_40816237_40816333_40827188_40827265_40829121_40829223_40829644_40829704_40838226_40838376_40840074_40840161_40844766_40844863_40845635_40845697_40849655_40849750_40856847_40856997_40860443_40860531_40862218_40862324_40866188_40866331_40867587_40867755_40870590_40870678_40878778_40878956_40879610_40879695_40882212_40882333_40882641_40882764_40883113_40883235_40884374_40884457_40884619_40884730_40886628_40886702_40888439_40888554_40891235_40891298_40894208
ENSMUSG00000035954.11_10	chr12	+	8315	51	NIC	ENSMUSG00000035954.11	novel	7360	52	NA	NA	6	-3	combination_of_known_splicesites	FALSE	canonical	2	4	junction_49	3.58976322338953	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTTTCTGCCTTTATTC	NA	False	NA	14	True	AATAAA	-17	NA	40496043	40896870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_40496394_40671219_40671304_40673801_40673843_40676335_40676392_40681520_40681618_40686081_40686231_40690359_40690445_40699336_40699489_40718404_40718487_40719006_40719068_40722739_40722873_40726700_40726790_40742912_40743039_40752859_40752985_40754329_40754493_40760793_40760901_40775645_40775803_40779847_40779946_40780042_40780127_40780286_40780388_40781823_40781906_40783176_40783348_40787366_40787560_40795657_40795786_40797978_40798114_40805765_40805865_40816237_40816333_40827188_40827265_40829121_40829223_40829644_40829704_40838226_40838376_40840074_40840161_40844766_40844863_40845635_40845697_40849655_40849750_40856847_40856997_40860443_40860531_40862218_40862324_40866188_40866331_40867587_40867755_40870590_40870678_40878778_40878956_40879610_40879695_40882212_40882333_40882641_40882764_40883113_40883235_40884374_40884457_40884619_40884730_40886628_40886702_40891235_40891298_40894208
ENSMUSG00000035954.11_8	chr12	+	3675	1	NIC	ENSMUSG00000035954.11	novel	8552	53	NA	NA	48958	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTAATGTTTCTGCCTT	NA	False	NA	9	True	AATAAA	-12	NA	40893190	40896865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_40893200_40896900
ENSMUSG00000035958.4_0	chr13	+	1948	7	FSM	ENSMUSG00000035958.4	ENSMUST00000038039.3	1957	7	2	7	0	-6	multi-exon	FALSE	canonical	3	768	junction_5	64.0791611125559	921	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGACTACGACTTTTTT	NA	False	NA	14	True	AATAAA	-14	NA	25015663	25026129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
ENSMUSG00000035960.15_0	chr14	+	1223	5	FSM	ENSMUSG00000035960.15	ENSMUST00000049411.12	1239	5	15	1	5	-1	multi-exon	FALSE	canonical	3	716	junction_1	194.901898400195	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGCTTTCTTTGTCCC	194	False	NA	13	True	AATAAA	-14	NA	51162439	51164595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_51162487_51162669_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUSG00000035960.15_1	chr14	+	1228	5	FSM	ENSMUSG00000035960.15	ENSMUST00000136753.8	655	5	14	-587	5	-1	multi-exon	FALSE	canonical	3	124	junction_1	445.940298694792	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGCTTTCTTTGTCCC	194	False	NA	13	True	AATAAA	-14	NA	51162439	51164595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_51162492_51162669_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUSG00000035960.15_3	chr14	+	1387	4	FSM	ENSMUSG00000035960.15	ENSMUST00000154288.3	935	4	24	-476	24	-1	multi-exon	FALSE	canonical	3	1054	junction_2	68.6310587286997	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGCTTTCTTTGTCCC	213	False	NA	13	True	AATAAA	-14	NA	51162458	51164595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUSG00000035967.16_10	chrX	+	4006	17	NIC	ENSMUSG00000035967.16	novel	3766	17	NA	NA	-2	-4	intron_retention	FALSE	canonical	3	44	junction_9	15.57040461902	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACATTTCTAGGTGT	NA	False	NA	10	True	AATAAA	-21	NA	55500234	55553194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55539492_55539604_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
ENSMUSG00000035967.16_14	chrX	+	3673	19	NIC	ENSMUSG00000035967.16	novel	3608	18	NA	NA	5	-4	combination_of_known_junctions	FALSE	canonical	2	3	junction_18	22.3606797749979	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACATTTCTAGGTGT	NA	False	NA	10	True	AATAAA	-21	NA	55500221	55553194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55539492_55539604_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239_55552360_55552573
ENSMUSG00000035967.16_16	chrX	+	7268	15	NIC	ENSMUSG00000035967.16	novel	3766	17	NA	NA	-1	-4	intron_retention	FALSE	canonical	3	62	junction_6	11.9080233627653	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACATTTCTAGGTGT	NA	False	NA	10	True	AATAAA	-21	NA	55500243	55553194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
ENSMUSG00000035967.16_33	chrX	+	3370	7	ISM	ENSMUSG00000035967.16	ENSMUST00000143142.8	2766	12	11473	4	-9776	-4	3prime_fragment	FALSE	canonical	3	67	junction_5	12.3827837473378	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACATTTCTAGGTGT	NA	False	NA	10	True	AATAAA	-21	NA	55540650	55553194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
ENSMUSG00000035967.16_38	chrX	+	684	1	ISM	ENSMUSG00000035967.16	ENSMUST00000134138.2	7170	16	52294	6	2084	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACATTTCTAGGTGT	NA	False	NA	10	True	AATAAA	-21	NA	55552510	55553194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_55552500_55553200
ENSMUSG00000035967.16_5	chrX	+	3885	18	NIC	ENSMUSG00000035967.16	novel	3608	18	NA	NA	7	-4	intron_retention	FALSE	canonical	3	44	junction_10	16.0656094259874	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACATTTCTAGGTGT	NA	False	NA	10	True	AATAAA	-21	NA	55500223	55553194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55539492_55539604_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
ENSMUSG00000035967.16_6	chrX	+	3775	17	FSM	ENSMUSG00000035967.16	ENSMUST00000039374.9	3766	17	-14	5	6	-4	multi-exon	FALSE	canonical	3	20	junction_10	18.8414436814168	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACATTTCTAGGTGT	NA	False	NA	10	True	AATAAA	-21	NA	55500222	55553194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
ENSMUSG00000035969.16_1	chr4	+	5288	11	ISM	ENSMUSG00000035969.16	ENSMUST00000035645.12	5300	12	91	3	0	-3	intron_retention	FALSE	canonical	3	32	junction_5	4.72863616701476	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCATTTTCTTTGTGCC	10	True	NA	14	True	AATAAA	-16	NA	43382069	43427085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_43382200_43414627_43416719_43421604_43422250_43422440_43422627_43422718_43422860_43423674_43423752_43423919_43424095_43424183_43424290_43424897_43424945_43425296_43426129_43426227
ENSMUSG00000035969.16_12	chr4	+	1104	2	ISM	ENSMUSG00000035969.16	ENSMUST00000131668.3	5093	10	11181	9	2286	6	3prime_fragment	FALSE	canonical	3	44	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCCAAGCCATTTTCTT	9715	False	NA	8	True	AATAAA	-10	NA	43425876	43427079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_43426129_43426227
ENSMUSG00000035969.16_19	chr4	+	3622	11	ISM	ENSMUSG00000035969.16	ENSMUST00000098106.9	5325	12	9648	2	-355	-2	3prime_fragment	FALSE	canonical	3	25	junction_10	6.29603049547888	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCATTTTCTTTGTGCCC	1355	False	NA	15	True	AATAAA	-17	NA	43416082	43427086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_43416719_43421604_43422250_43422440_43422627_43422718_43422860_43423674_43423752_43423919_43424095_43424183_43424290_43424897_43424945_43425296_43426129_43426227_43426366_43426447
ENSMUSG00000035969.16_2	chr4	+	5200	12	FSM	ENSMUSG00000035969.16	ENSMUST00000035645.12	5300	12	96	4	5	-4	multi-exon	FALSE	canonical	3	25	junction_11	6.00550711451409	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGCCATTTTCTTTGTGC	15	True	NA	13	True	AATAAA	-15	NA	43382074	43427084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43382200_43414627_43416719_43421604_43422250_43422440_43422627_43422718_43422860_43423674_43423752_43423919_43424095_43424183_43424290_43424897_43424945_43425296_43426129_43426227_43426366_43426447
ENSMUSG00000035969.16_7	chr4	+	5236	12	FSM	ENSMUSG00000035969.16	ENSMUST00000098106.9	5325	12	85	4	18	-4	multi-exon	FALSE	canonical	1	3	junction_1	11.6178830520698	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGCCATTTTCTTTGTGC	-33	True	NA	13	True	AATAAA	-15	NA	43406519	43427084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43406681_43414627_43416719_43421604_43422250_43422440_43422627_43422718_43422860_43423674_43423752_43423919_43424095_43424183_43424290_43424897_43424945_43425296_43426129_43426227_43426366_43426447
ENSMUSG00000035969.16_8	chr4	+	5411	11	ISM	ENSMUSG00000035969.16	ENSMUST00000098106.9	5325	12	-6	2	-6	-2	intron_retention	FALSE	canonical	1	3	junction_1	11.774548823628	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCATTTTCTTTGTGCCC	157	False	NA	15	True	AATAAA	-17	NA	43406428	43427086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_43406681_43414627_43416719_43421604_43422250_43422440_43422627_43422718_43422860_43423674_43423752_43423919_43424095_43424183_43424290_43424897_43424945_43425296_43426129_43426227
ENSMUSG00000035992.16_0	chr11	+	6250	18	FSM	ENSMUSG00000035992.16	ENSMUST00000046835.14	6255	18	4	1	4	-1	multi-exon	TRUE	canonical	3	95	junction_9	15.4083965785252	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGGTAATGTTTGTGTTT	1980	False	NA	26	True	AATAAA	-16	NA	54329028	54409060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_54329215_54356912_54357040_54366457_54366593_54371075_54371177_54371435_54371511_54373320_54373413_54378537_54378622_54380094_54380167_54381628_54381765_54384018_54384221_54387427_54387514_54390236_54390384_54391345_54391516_54393084_54394502_54395563_54395733_54400707_54400906_54404195_54404312_54406323
ENSMUSG00000035992.16_22	chr11	+	5159	9	ISM	ENSMUSG00000035992.16	ENSMUST00000046835.14	6255	18	55078	0	28717	0	3prime_fragment	FALSE	canonical	3	112	junction_1	12.7180973419769	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGTAATGTTTGTGTTTC	NA	False	NA	27	True	AATAAA	-17	NA	54384102	54409061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_54384221_54387427_54387514_54390236_54390384_54391345_54391516_54393084_54394502_54395563_54395733_54400707_54400906_54404195_54404312_54406323
ENSMUSG00000035992.16_25	chr11	+	3853	5	ISM	ENSMUSG00000035992.16	ENSMUST00000046835.14	6255	18	64844	1	38483	-1	3prime_fragment	FALSE	canonical	3	116	junction_3	13.3674043852949	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGGTAATGTTTGTGTTT	NA	False	NA	26	True	AATAAA	-16	NA	54393868	54409060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_54394502_54395563_54395733_54400707_54400906_54404195_54404312_54406323
ENSMUSG00000035992.16_28	chr11	+	1933	1	ISM	ENSMUSG00000035992.16	ENSMUST00000046835.14	6255	18	78102	2	51741	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGGTAATGTTTGTGTT	6102	False	NA	25	True	AATAAA	-15	NA	54407126	54409059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_54407100_54409100
ENSMUSG00000036002.13_1	chr4	-	3045	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107956.8	3107	9	59	3	21	-3	multi-exon	FALSE	canonical	3	38	junction_5	6.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTAACCTCTACTTTTTT	-22	True	NA	-1	True	AATAAA	-18	NA	43045738	43032416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43045647
ENSMUSG00000036002.13_14	chr4	-	967	1	ISM	ENSMUSG00000036002.13	ENSMUST00000107958.8	3280	9	6903	5	3916	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAACTAACCTCTACTTTT	6914	False	NA	-3	True	AATAAA	-16	NA	43033385	43032418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_43032400_43033400
ENSMUSG00000036002.13_16	chr4	-	3476	9	ISM	ENSMUSG00000036002.13	ENSMUST00000107959.8	3060	10	-44	2	-40	-2	intron_retention	TRUE	canonical	1	1	junction_8	15.8779524813497	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAACCTCTACTTTTTTT	5871	False	NA	0	True	AATAAA	-19	NA	43040335	43032415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43039814
ENSMUSG00000036002.13_2	chr4	-	2182	7	ISM	ENSMUSG00000036002.13	ENSMUST00000107958.8	3280	9	4108	7	1121	-7	3prime_fragment	FALSE	canonical	3	38	junction_5	6.85565460040104	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAACTAACCTCTACTT	10001	False	NA	-5	True	AATAAA	-14	NA	43036180	43032420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835
ENSMUSG00000036002.13_6	chr4	-	3271	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107958.8	3280	9	5	4	5	-4	multi-exon	FALSE	canonical	3	8	junction_8	13.7636296085008	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTAACCTCTACTTTTT	16	True	NA	-2	True	AATAAA	-17	NA	43040283	43032417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43039965
ENSMUSG00000036002.13_9	chr4	-	2982	9	NIC	ENSMUSG00000036002.13	novel	3060	10	NA	NA	-9	-6	combination_of_known_splicesites	FALSE	canonical	2	2	junction_8	15.5724115023974	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAACTAACCTCTACTTT	-5	True	NA	-4	True	AATAAA	-15	NA	43040304	43032419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43040273
ENSMUSG00000036006.21_2	chr13	+	3786	10	ISM	ENSMUSG00000036006.21	ENSMUST00000110384.9	5608	23	62700	18	-8715	-18	3prime_fragment	FALSE	canonical	0	0	junction_1	1.25707872210942	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTACTAGTCTAGTGTAGA	5463	False	NA	-3	True	AATAAA	-11	NA	24885330	24917781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_24885714_24890073_24890259_24894105_24894275_24897604_24897741_24899272_24899435_24901529_24901689_24905613_24905817_24907691_24907776_24908928_24909020_24915567
ENSMUSG00000036009.17_0	chr10	-	1952	12	FSM	ENSMUSG00000036009.17	ENSMUST00000046638.10	2033	12	16	65	9	1	multi-exon	FALSE	canonical	3	65	junction_11	25.2121576340063	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAATCATAGTGTTTTC	NA	False	NA	NA	False	AATAAA	-10	NA	105677223	105599114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105676936
ENSMUSG00000036009.17_10	chr10	-	1885	12	NNC	ENSMUSG00000036009.17	novel	2033	12	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	39.2127066604228	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAATCATAGTGTTTTC	NA	False	NA	NA	False	AATAAA	-10	NA	105677240	105599114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661942_105662453_105665708_105665816_105668711_105668877_105676936
ENSMUSG00000036009.17_17	chr10	-	1146	3	NNC	ENSMUSG00000036009.17	novel	2033	12	NA	NA	11	918	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCAAGCTGTTCTTCAC	NA	False	NA	NA	False	AATAAA	-19	NA	105677221	105674147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_105674418_105675922_105676514_105676936
ENSMUSG00000036009.17_19	chr10	-	2015	13	NIC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	40	1	combination_of_known_junctions	FALSE	canonical	1	2	junction_12	44.608404165832	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAATCATAGTGTTTTC	NA	False	NA	NA	False	AATAAA	-10	NA	105677192	105599114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105671987_105672082_105676936
ENSMUSG00000036022.16_0	chrX	-	4306	9	FSM	ENSMUSG00000036022.16	ENSMUST00000114838.8	3536	9	-779	9	-1	-9	multi-exon	FALSE	canonical	3	73	junction_3	8.54034542626936	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAGATGGATCGTAAA	NA	False	NA	-22	True	AATAAA	-15	NA	52358676	52332310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_52335168_52342912_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
ENSMUSG00000036022.16_1	chrX	-	3556	9	FSM	ENSMUSG00000036022.16	ENSMUST00000071023.12	4334	9	759	19	-26	-9	multi-exon	TRUE	canonical	3	12	junction_3	25.3743842289818	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAGATGGATCGTAAA	NA	False	NA	-22	True	AATAAA	-15	NA	52357923	52332310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_52335168_52342912_52343010_52347833_52347899_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
ENSMUSG00000036022.16_7	chrX	-	3627	10	NIC	ENSMUSG00000036022.16	novel	2038	10	NA	NA	-25	-9	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	33.4390914874518	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAGATGGATCGTAAA	NA	False	NA	-22	True	AATAAA	-15	NA	52357922	52332310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_52335168_52342730_52342806_52342912_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
ENSMUSG00000036022.16_9	chrX	-	2623	1	ISM	ENSMUSG00000036022.16	ENSMUST00000071023.12	4334	9	23749	19	22964	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAGATGGATCGTAAA	NA	False	NA	-22	True	AATAAA	-15	NA	52334933	52332310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_52332300_52334900
ENSMUSG00000036023.7_0	chr14	+	1797	16	NIC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_5	194.893064696173	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045382	51058757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052413_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUSG00000036023.7_1	chr14	+	1808	16	FSM	ENSMUSG00000036023.7	ENSMUST00000036126.7	1894	16	85	1	0	0	multi-exon	FALSE	canonical	3	692	junction_5	52.2695577431708	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045382	51058757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUSG00000036023.7_8	chr14	+	1876	16	NIC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	196.861327391192	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045382	51058757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_51045445_51047462_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUSG00000036023.7_9	chr14	+	2193	15	FSM	ENSMUSG00000036023.7	ENSMUST00000228672.2	2173	15	-20	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	45.539397610134	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045382	51058757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUSG00000036026.16_0	chr17	-	3233	24	FSM	ENSMUSG00000036026.16	ENSMUST00000113523.9	3284	24	45	6	45	-6	multi-exon	FALSE	canonical	3	105	junction_20	27.310993375713	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTTCTGGTTGGCAG	NA	False	NA	-12	True	AATAAA	-14	NA	45997140	45971102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_45971907_45972148_45972230_45972379_45972496_45972682_45972851_45973788_45973895_45974432_45974596_45975669_45975736_45975844_45975932_45976090_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45989888_45989928_45990162_45990243_45990457_45990641_45997042
ENSMUSG00000036026.16_4	chr17	-	3157	23	NIC	ENSMUSG00000036026.16	novel	3284	24	NA	NA	-40	-6	combination_of_known_junctions	FALSE	canonical	3	63	junction_20	30.8694933524137	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTTCTGGTTGGCAG	NA	False	NA	-12	True	AATAAA	-14	NA	45997103	45971102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_45971907_45972148_45972230_45972379_45972496_45972682_45972851_45973788_45973895_45974432_45974596_45975669_45975736_45975844_45975932_45976090_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45990162_45990243_45990457_45990641_45997042
ENSMUSG00000036026.16_7	chr17	-	2179	4	ISM	ENSMUSG00000036026.16	ENSMUST00000113523.9	3284	24	23325	6	2264	-6	intron_retention	FALSE	canonical	3	169	junction_2	9.62635271879577	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTTCTGGTTGGCAG	NA	False	NA	-12	True	AATAAA	-14	NA	45973860	45971102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_45971907_45972148_45972230_45972379_45972496_45972682
ENSMUSG00000036030.10_0	chr9	+	7619	20	FSM	ENSMUSG00000036030.10	ENSMUST00000055535.9	9148	20	415	1114	415	-1114	multi-exon	FALSE	canonical	3	13	junction_7	6.01935934968244	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-18	NA	72714570	72823459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72714815_72716736_72717040_72749976_72750122_72752139_72752274_72755190_72755329_72755595_72755755_72757033_72757194_72758762_72759011_72762237_72762403_72764056_72764363_72766042_72766232_72798058_72798155_72799090_72799278_72799509_72799638_72801105_72801277_72811986_72812170_72813429_72813551_72814982_72815146_72817918_72818024_72819185
ENSMUSG00000036030.10_1	chr9	+	7549	19	NIC	ENSMUSG00000036030.10	novel	9148	20	NA	NA	176	-1120	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	8.03464719546263	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAGTAAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-12	NA	72714331	72823453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_72714815_72749976_72750122_72752139_72752274_72755190_72755329_72755595_72755755_72757033_72757194_72758762_72759011_72762237_72762403_72764056_72764363_72766042_72766232_72798058_72798155_72799090_72799278_72799509_72799638_72801105_72801277_72811986_72812170_72813429_72813551_72814982_72815146_72817918_72818024_72819185
ENSMUSG00000036030.10_11	chr9	+	5238	8	ISM	ENSMUSG00000036030.10	ENSMUST00000055535.9	9148	20	85023	1120	-18730	-1120	3prime_fragment	FALSE	canonical	3	26	junction_5	2.96922995583236	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAGTAAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-12	NA	72799178	72823453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_72799278_72799509_72799638_72801105_72801277_72811986_72812170_72813429_72813551_72814982_72815146_72817918_72818024_72819185
ENSMUSG00000036030.10_12	chr9	+	4739	5	ISM	ENSMUSG00000036030.10	ENSMUST00000055535.9	9148	20	97938	1114	-5815	-1114	3prime_fragment	FALSE	canonical	3	26	junction_2	3.67423461417477	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4750	False	NA	NA	False	GATAAA	-18	NA	72812093	72823459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_72812170_72813429_72813551_72814982_72815146_72817918_72818024_72819185
ENSMUSG00000036030.10_15	chr9	+	3700	1	ISM	ENSMUSG00000036030.10	ENSMUST00000055535.9	9148	20	106655	63	2902	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAAACTGCTGTCTACAT	NA	False	NA	NA	False	AATAAA	-22	NA	72820810	72824510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_72820800_72824500
ENSMUSG00000036030.10_5	chr9	+	7174	13	ISM	ENSMUSG00000036030.10	ENSMUST00000055535.9	9148	20	44819	64	44819	-64	3prime_fragment	FALSE	canonical	3	17	junction_4	5.77350269189626	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGAAACTGCTGTCTACA	9413	False	NA	NA	False	AATAAA	-21	NA	72758974	72824509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_72759011_72762237_72762403_72764056_72764363_72766042_72766232_72798058_72798155_72799090_72799278_72799509_72799638_72801105_72801277_72811986_72812170_72813429_72813551_72814982_72815146_72817918_72818024_72819185
ENSMUSG00000036030.10_6	chr9	+	5786	11	ISM	ENSMUSG00000036030.10	ENSMUST00000055535.9	9148	20	50032	1120	50032	-1120	3prime_fragment	FALSE	canonical	3	17	junction_2	5.6	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAGTAAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-12	NA	72764187	72823453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_72764363_72766042_72766232_72798058_72798155_72799090_72799278_72799509_72799638_72801105_72801277_72811986_72812170_72813429_72813551_72814982_72815146_72817918_72818024_72819185
ENSMUSG00000036036.16_10	chr17	+	3667	3	FSM	ENSMUSG00000036036.16	ENSMUST00000172540.2	815	3	-1965	-887	3	-30	multi-exon	FALSE	canonical	3	474	junction_1	1432.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTAAAAGAAGGGGAGG	NA	False	NA	6	True	AATAAA	-11	NA	37313448	37321494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_37315796_37316950_37317087_37320310
ENSMUSG00000036036.16_12	chr17	+	3657	3	FSM	ENSMUSG00000036036.16	ENSMUST00000174672.2	2597	3	-1090	30	-1	-30	multi-exon	FALSE	canonical	3	2767	junction_1	286	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTAAAAGAAGGGGAGG	NA	False	NA	6	True	AATAAA	-11	NA	37313467	37321494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_37315796_37316941_37317087_37320310
ENSMUSG00000036036.16_2	chr17	+	1652	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	-30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1406.78256582174	195	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTAAAAGAAGGGGAGG	NA	False	NA	6	True	AATAAA	-11	NA	37313445	37321494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_37313632_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036036.16_3	chr17	+	1689	5	FSM	ENSMUSG00000036036.16	ENSMUST00000069250.14	1749	5	30	30	1	-30	multi-exon	FALSE	canonical	3	426	junction_1	1286.78268852981	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTAAAAGAAGGGGAGG	NA	False	NA	6	True	AATAAA	-11	NA	37313446	37321494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036036.16_44	chr17	+	807	1	ISM	ENSMUSG00000036036.16	ENSMUST00000089968.13	1991	6	8633	30	5193	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTAAAAGAAGGGGAGG	NA	False	NA	6	True	AATAAA	-11	NA	37320687	37321494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_37320700_37321500
ENSMUSG00000036036.16_7	chr17	+	1680	5	ISM	ENSMUSG00000036036.16	ENSMUST00000089968.13	1991	6	1392	30	1	-30	3prime_fragment	FALSE	canonical	3	426	junction_1	1230.59345439507	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTAAAAGAAGGGGAGG	NA	False	NA	6	True	AATAAA	-11	NA	37313446	37321494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316950_37317087_37320310
ENSMUSG00000036046.15_0	chr15	-	2783	10	FSM	ENSMUSG00000036046.15	ENSMUST00000165743.2	5032	10	-29	2278	0	2	multi-exon	FALSE	canonical	3	237	junction_4	21.5893206338712	558	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGCCTCAGTTTGCCCA	NA	False	NA	-10	True	ATTAAA	-19	NA	84872201	84832198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_84833480_84833751_84833911_84834812_84834976_84837330_84837523_84838102_84838244_84839590_84839693_84839846_84839925_84840006_84840130_84844670_84844823_84871809
ENSMUSG00000036052.15_1	chr4	+	2376	4	FSM	ENSMUSG00000036052.15	ENSMUST00000098112.9	3093	4	15	702	15	0	multi-exon	FALSE	canonical	3	21	junction_3	4.32049379893857	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATATAGCCTCTGCGCA	-11	True	NA	NA	False	AATAAA	-8	NA	42949881	42958723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_42950005_42953140_42953386_42956525_42957128_42957317
ENSMUSG00000036052.15_3	chr4	+	2616	5	NIC	ENSMUSG00000036052.15	novel	3302	4	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	12.7549010188241	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATATAGCCTCTGCGCA	16	True	NA	NA	False	AATAAA	-8	NA	42949908	42958723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_42950005_42950475_42950743_42953140_42953386_42956525_42957128_42957317
ENSMUSG00000036052.15_5	chr4	+	2593	4	FSM	ENSMUSG00000036052.15	ENSMUST00000084662.12	3302	4	7	702	7	0	multi-exon	FALSE	canonical	1	1	junction_1	12.4721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATATAGCCTCTGCGCA	-5	True	NA	NA	False	AATAAA	-8	NA	42950402	42958723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_42950743_42953140_42953386_42956525_42957128_42957317
ENSMUSG00000036053.18_12	chr2	+	1663	1	ISM	ENSMUSG00000036053.18	ENSMUST00000090952.11	5414	26	274278	4	274270	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTCGGTCATATGTTCT	6651	False	NA	13	True	AATAAA	-12	NA	53022149	53023812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_53022100_53023800
ENSMUSG00000036053.18_2	chr2	+	3501	13	ISM	ENSMUSG00000036053.18	ENSMUST00000127122.9	5508	27	250485	4	250477	-4	3prime_fragment	FALSE	canonical	0	0	junction_1	4.17997873466148	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTCGGTCATATGTTCT	NA	False	NA	13	True	AATAAA	-12	NA	52998356	53023812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_52998471_53004123_53004249_53004866_53005070_53006851_53007087_53008198_53008268_53008375_53008457_53009971_53010102_53012499_53012664_53013483_53013586_53016024_53016124_53016864_53016989_53020423_53020518_53021851
ENSMUSG00000036053.18_8	chr2	+	2254	4	ISM	ENSMUSG00000036053.18	ENSMUST00000127122.9	5508	27	268180	1	268172	-1	3prime_fragment	FALSE	canonical	1	3	junction_3	3.55902608401044	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCGGTCATATGTTCTAAT	553	False	NA	16	True	AATAAA	-15	NA	53016051	53023815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_53016124_53016864_53016989_53020423_53020518_53021851
ENSMUSG00000036054.16_12	chr8	+	4238	11	FSM	ENSMUSG00000036054.16	ENSMUST00000131489.8	4609	11	371	0	-20	0	multi-exon	FALSE	canonical	3	99	junction_6	9.88989383158384	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGGCTCCTGTGCTGCC	1463	False	NA	26	True	AATAAA	-17	NA	70687246	70715755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70687303_70689317_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228_70706341_70709779_70710265_70711592_70711655_70712332_70712470_70713118_70713968_70715520
ENSMUSG00000036054.16_5	chr8	+	3594	12	NIC	ENSMUSG00000036054.16	novel	4609	11	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	90	junction_10	11.7353742277127	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGGCTCCTGTGCTGCC	1466	False	NA	26	True	AATAAA	-17	NA	70687249	70715755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70687303_70689317_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228_70706341_70709779_70710265_70711592_70711655_70712332_70712470_70713118_70713240_70713880_70713968_70715520
ENSMUSG00000036054.16_55	chr8	+	3150	10	NIC	ENSMUSG00000036054.16	novel	4609	11	NA	NA	-829	0	combination_of_known_junctions	FALSE	canonical	3	90	junction_8	11.7851130197758	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGGCTCCTGTGCTGCC	9621	False	NA	26	True	AATAAA	-17	NA	70695404	70715755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70696707_70701075_70701197_70704263_70704752_70706228_70706341_70709779_70710265_70711592_70711655_70712332_70712470_70713118_70713240_70713880_70713968_70715520
ENSMUSG00000036054.16_6	chr8	+	3530	11	FSM	ENSMUSG00000036054.16	ENSMUST00000093458.11	3874	11	343	1	-41	-1	multi-exon	FALSE	canonical	1	3	junction_10	33.7467035427166	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCCGGCTCCTGTGCTGC	1442	False	NA	25	True	AATAAA	-16	NA	70687225	70715754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70687303_70689317_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228_70706341_70709779_70710265_70711592_70711655_70712332_70712470_70713118_70713240_70715520
ENSMUSG00000036057.12_0	chr9	-	5309	25	FSM	ENSMUSG00000036057.12	ENSMUST00000040021.12	5346	25	31	6	31	-6	multi-exon	FALSE	canonical	3	45	junction_24	14.8742413438654	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTGAGTTCACCTAC	NA	False	NA	-9	True	AATAAA	-15	NA	110237250	110214155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_110214801_110214881_110214996_110215085_110215225_110215312_110215418_110215521_110215707_110215798_110217720_110217808_110217989_110218079_110218232_110218308_110218464_110218540_110218859_110219110_110219257_110219537_110219604_110219697_110219813_110219918_110219999_110220111_110220171_110220276_110220334_110220701_110220750_110220834_110220967_110221049_110221131_110221552_110221685_110221770_110221821_110222438_110222516_110222768_110222897_110227188_110227264_110237101
ENSMUSG00000036057.12_1	chr9	-	2135	6	ISM	ENSMUSG00000036057.12	ENSMUST00000040021.12	5346	25	20536	6	-1028	-6	3prime_fragment	FALSE	canonical	3	78	junction_2	13.5410487038486	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTGAGTTCACCTAC	NA	False	NA	-9	True	AATAAA	-15	NA	110216745	110214155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_110214801_110214881_110214996_110215085_110215225_110215312_110215418_110215521_110215707_110215798
ENSMUSG00000036057.12_8	chr9	-	345	1	ISM	ENSMUSG00000036057.12	ENSMUST00000040021.12	5346	25	22781	6	815	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTGAGTTCACCTAC	NA	False	NA	-9	True	AATAAA	-15	NA	110214500	110214155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_110214200_110214500
ENSMUSG00000036061.11_0	chr15	-	3320	4	ISM	ENSMUSG00000036061.11	ENSMUST00000229371.2	3882	7	3783	3	9	-3	3prime_fragment	TRUE	canonical	3	65	junction_3	17.3781471969828	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTTGTTTTGCAAATT	NA	False	NA	-4	True	NA	NA	NA	103071736	103061719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_103064629_103066043_103066346_103066583_103066655_103071698
ENSMUSG00000036061.11_1	chr15	-	2445	1	ISM	ENSMUSG00000036061.11	ENSMUST00000229377.2	3601	5	6240	3	2265	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTTGTTTTGCAAATT	NA	False	NA	-4	True	NA	NA	NA	103064164	103061719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_103061700_103064200
ENSMUSG00000036061.11_4	chr15	-	3347	4	NNC	ENSMUSG00000036061.11	novel	3882	7	NA	NA	12	-4	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_2	37.6061460697879	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTTTTGTTTTGCAAAT	NA	False	NA	-5	True	NA	NA	NA	103071733	103061720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_103064629_103066043_103066346_103066552_103066655_103071698
ENSMUSG00000036061.11_6	chr15	-	3225	3	FSM	ENSMUSG00000036061.11	ENSMUST00000231198.2	491	3	9	-2743	9	-10	multi-exon	FALSE	canonical	3	15	junction_2	46	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAACACAGTGTTTTCC	NA	False	NA	-28	True	NA	NA	NA	103071736	103061743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103064629_103066043_103066346_103071698
ENSMUSG00000036061.11_8	chr15	-	3123	2	FSM	ENSMUSG00000036061.11	ENSMUST00000064067.9	3281	2	171	-13	171	-4	multi-exon	FALSE	canonical	3	107	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTTTTGTTTTGCAAAT	NA	False	NA	-5	True	NA	NA	NA	103066258	103061720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103064629_103066043
ENSMUSG00000036061.11_9	chr15	-	3286	3	ISM	ENSMUSG00000036061.11	ENSMUST00000229377.2	3601	5	3745	4	-230	-4	3prime_fragment	FALSE	canonical	3	80	junction_2	13.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTTTTGTTTTGCAAAT	NA	False	NA	-5	True	NA	NA	NA	103066659	103061720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_103064629_103066043_103066346_103066583
ENSMUSG00000036067.13_0	chr2	-	2078	10	FSM	ENSMUSG00000036067.13	ENSMUST00000045702.6	2138	10	55	5	3	-5	multi-exon	FALSE	canonical	0	0	junction_5	0.916245694581702	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGGAGGAGTGGGCTCT	NA	False	NA	NA	False	AATAAA	-24	NA	26917955	26911379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26912082_26912730_26912877_26913099_26913262_26913546_26913656_26914194_26914348_26914596_26914806_26915234_26915335_26915912_26916120_26917152_26917316_26917828
ENSMUSG00000036073.18_1	chr4	+	1291	11	FSM	ENSMUSG00000036073.19	ENSMUST00000084695.12	1595	11	289	15	-241	-15	multi-exon	FALSE	canonical	2	236	junction_6	31.3438989278615	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATGTTTTCTGACACCA	-4	True	NA	17	True	AATAAA	-18	NA	41755516	41758680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ENSMUSG00000036073.18_16	chr4	+	1404	10	NIC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-234	-15	intron_retention	FALSE	canonical	2	236	junction_5	29.8009859808715	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATGTTTTCTGACACCA	3	True	NA	17	True	AATAAA	-18	NA	41755523	41758680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ENSMUSG00000036073.18_3	chr4	+	1299	11	NIC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-246	-15	combination_of_known_junctions	FALSE	canonical	2	43	junction_2	83.1877394812481	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATGTTTTCTGACACCA	-9	True	NA	17	True	AATAAA	-18	NA	41755511	41758680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_41755653_41755960_41756131_41756343_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ENSMUSG00000036073.18_9	chr4	+	1537	9	NIC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-237	-15	intron_retention	FALSE	canonical	2	43	junction_2	92.4836978877899	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATGTTTTCTGACACCA	0	True	NA	17	True	AATAAA	-18	NA	41755520	41758680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_41755653_41755960_41756131_41756343_41756423_41756512_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ENSMUSG00000036078.17_0	chr4	-	1592	4	FSM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	40	8	1	-8	multi-exon	FALSE	canonical	3	474	junction_2	54.2647829320883	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTTTCGTTTCCTTAT	4	True	NA	NA	False	AATAAA	-9	NA	41741319	41738500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41741101
ENSMUSG00000036078.17_1	chr4	-	1541	4	NIC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	5	-8	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	247.10906274131	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTTTCGTTTCCTTAT	8	True	NA	NA	False	AATAAA	-9	NA	41741315	41738500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_41739581_41740549_41740643_41740822_41740977_41741101
ENSMUSG00000036078.17_6	chr4	-	998	1	ISM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	1861	8	1550	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTTTCGTTTCCTTAT	-2	True	NA	NA	False	AATAAA	-9	NA	41739498	41738500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_41738500_41739500
ENSMUSG00000036086.17_1	chr1	-	4193	21	FSM	ENSMUSG00000036086.17	ENSMUST00000086614.12	4210	21	10	7	2	-7	multi-exon	TRUE	canonical	3	115	junction_3	27.0654761642946	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATATTTTTAAATTATG	NA	False	NA	-12	True	AATAAA	-15	NA	128030189	127881927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
ENSMUSG00000036086.17_16	chr1	-	4582	21	FSM	ENSMUSG00000036086.17	ENSMUST00000112538.4	4741	21	549	-390	2	-96	multi-exon	FALSE	canonical	3	13	junction_20	44.0595903294618	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGTCTCCTGGTCCTCG	NA	False	NA	0	True	TATAAA	-23	NA	128030189	127882016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029511
ENSMUSG00000036086.17_23	chr1	-	2332	9	ISM	ENSMUSG00000036086.17	ENSMUST00000086614.12	4210	21	126035	8	-3469	-8	3prime_fragment	FALSE	canonical	3	115	junction_3	23.8851418249924	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATATTTTTAAATTAT	NA	False	NA	-13	True	AATAAA	-14	NA	127904164	127881928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875
ENSMUSG00000036086.17_55	chr1	-	2032	13	NIC	ENSMUSG00000036086.17	novel	1913	13	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.1305933426774	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGATATGTGTGATTGG	NA	False	NA	NA	False	AATAAA	-13	NA	128030190	127914848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
ENSMUSG00000036086.17_7	chr1	-	4078	20	NIC	ENSMUSG00000036086.17	novel	4210	21	NA	NA	2	-103	combination_of_known_splicesites	FALSE	canonical	2	6	junction_18	45.8399600682436	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGATTTTGTCTCCTG	NA	False	NA	-7	True	TATAAA	-16	NA	128030189	127882023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_128019579_128019748_128029989
ENSMUSG00000036087.19_0	chr5	+	4345	8	FSM	ENSMUSG00000036087.19	ENSMUST00000144843.8	4833	8	62	426	-3	-408	multi-exon	FALSE	canonical	3	204	junction_4	22.378925946761	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATTTGCTGAATCATTT	NA	False	NA	26	True	AATAAA	-39	NA	73071708	73135746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_73072357_73098634_73098784_73105904_73106070_73112669_73112832_73114635_73114996_73115491_73115630_73131873_73132190_73133339
ENSMUSG00000036087.19_11	chr5	+	4411	9	FSM	ENSMUSG00000036087.19	ENSMUST00000143829.5	4828	9	9	408	9	-408	multi-exon	FALSE	canonical	2	6	junction_7	103.604717556683	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATTTGCTGAATCATTT	NA	False	NA	26	True	AATAAA	-39	NA	73071720	73135746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_73072357_73098634_73098784_73105904_73106070_73112669_73112832_73114635_73114996_73115491_73115630_73123146_73123225_73131873_73132190_73133339
ENSMUSG00000036087.19_21	chr5	+	2101	1	ISM	ENSMUSG00000036087.19	ENSMUST00000144843.8	4833	8	62400	25	28205	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATAATGTTTATTATTAA	NA	False	NA	8	True	AATAAA	-8	NA	73134046	73136147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_73134000_73136100
ENSMUSG00000036093.8_0	chr2	-	2978	1	ISM	ENSMUSG00000036093.8	ENSMUST00000036541.8	5239	6	23970	3	11384	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATATTCTTGGGGGTTT	1931	False	NA	-6	True	AATAAA	-19	NA	52290943	52287965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_52288000_52290900
ENSMUSG00000036093.8_1	chr2	-	5201	6	FSM	ENSMUSG00000036093.8	ENSMUST00000036541.8	5239	6	32	6	32	-6	multi-exon	FALSE	canonical	3	352	junction_4	32.5059994462561	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATATATATTCTTGGGGG	4787	False	NA	-9	True	AATAAA	-16	NA	52314881	52287968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_52292445_52294917_52295070_52302073_52302158_52306075_52306224_52306647_52306709_52314601
ENSMUSG00000036093.8_2	chr2	-	5050	5	NIC	ENSMUSG00000036093.8	novel	5239	6	NA	NA	35	-6	combination_of_known_splicesites	FALSE	canonical	3	11	junction_3	166.191719107782	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATATATATTCTTGGGGG	4790	False	NA	-9	True	AATAAA	-16	NA	52314878	52287968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_52292445_52294917_52295070_52302073_52302158_52306647_52306709_52314601
ENSMUSG00000036097.9_0	chr19	+	6824	20	FSM	ENSMUSG00000036097.9	ENSMUST00000096053.5	6249	20	12	-587	0	476	multi-exon	FALSE	canonical	3	153	junction_11	22.2601092848611	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCTTAAACGTGTCTGG	1055	False	NA	-4	True	ATTAAA	-9	NA	44919601	44972214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_44919890_44922550_44922595_44923371_44924106_44926803_44926859_44929897_44930866_44931887_44931959_44936368_44936492_44937410_44937579_44940507_44940611_44947443_44947520_44949172_44949315_44955405_44955509_44955941_44956119_44957475_44957574_44960036_44960125_44961572_44961705_44962046_44962125_44964067_44964155_44967599_44967669_44968994
ENSMUSG00000036097.9_21	chr19	+	6109	18	ISM	ENSMUSG00000036097.9	ENSMUST00000096053.5	6249	20	4157	-579	4145	468	3prime_fragment	FALSE	canonical	3	153	junction_9	23.1696018486937	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTTTCTCAGCTTAAAC	5200	False	NA	-12	True	ATTAAA	-1	NA	44923746	44972206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_44924106_44926803_44926859_44929897_44930866_44931887_44931959_44936368_44936492_44937410_44937579_44940507_44940611_44947443_44947520_44949172_44949315_44955405_44955509_44955941_44956119_44957475_44957574_44960036_44960125_44961572_44961705_44962046_44962125_44964067_44964155_44967599_44967669_44968994
ENSMUSG00000036097.9_24	chr19	+	5081	16	FSM	ENSMUSG00000036097.9	ENSMUST00000236057.2	3831	16	153	-1403	153	479	multi-exon	FALSE	canonical	3	153	junction_7	22.4950364895607	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTAAACGTGTCTGGCAA	NA	False	NA	-1	True	ATTAAA	-12	NA	44930522	44972217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_44930866_44931887_44931959_44936368_44936492_44937410_44937579_44940507_44940611_44947443_44947520_44949172_44949315_44955405_44955509_44955941_44956119_44957475_44957574_44960036_44960125_44961572_44961705_44962046_44962125_44964067_44964155_44967599_44967669_44968994
ENSMUSG00000036097.9_3	chr19	+	6073	20	NNC	ENSMUSG00000036097.9	novel	6249	20	NA	NA	0	-163	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	48.975713354835	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTAACTGTTTGCC	1055	False	NA	18	True	ATTAAA	-18	NA	44919601	44971464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_44919890_44922550_44922595_44923371_44924106_44926803_44926859_44929897_44930866_44931887_44931959_44936368_44936492_44937410_44937579_44940507_44940611_44947443_44947520_44949172_44949315_44955405_44955509_44955941_44956119_44957475_44957574_44960036_44960125_44961572_44961705_44962046_44962125_44964067_44964155_44967599_44967669_44968995
ENSMUSG00000036097.9_40	chr19	+	2481	1	Genic_Genomic	ENSMUSG00000036097.9	novel	NA	NA	NA	NA	38450	483	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACGTGTCTGGCAACTTT	NA	False	NA	3	True	ATTAAA	-16	NA	44969740	44972221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_44969700_44972200
ENSMUSG00000036098.16_1	chr19	-	3317	11	ISM	ENSMUSG00000036098.16	ENSMUST00000186854.7	1517	13	994	-2028	994	0	3prime_fragment	FALSE	canonical	2	8	junction_8	3.65513337649941	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCTCTGACATCTTCT	10016	False	NA	0	True	NA	NA	NA	10193898	10185635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10187830_10187962_10188038_10189071_10189178_10189509_10189585_10189805_10189894_10191422_10191675_10192123_10192292_10192380_10192467_10193105_10193175_10193424_10193514_10193783
ENSMUSG00000036098.16_12	chr19	-	5329	25	NIC	ENSMUSG00000036098.16	novel	3339	26	NA	NA	1	-2	combination_of_known_splicesites	FALSE	canonical	2	3	junction_23	4.9016366314392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGCCTCTGACATCTT	7143	False	NA	-2	True	NA	NA	NA	10218111	10185637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_10187830_10187962_10188038_10189071_10189178_10189509_10189585_10189805_10189894_10191422_10191675_10192123_10192292_10192380_10192470_10193105_10193175_10193424_10193514_10193783_10193857_10193981_10194143_10194783_10194894_10195511_10195624_10195827_10196029_10196401_10196493_10196885_10196997_10197158_10197236_10198541_10198738_10200480_10200605_10200680_10200932_10201735_10202016_10202812_10202875_10206383_10206472_10217922
ENSMUSG00000036098.16_13	chr19	-	3241	10	ISM	ENSMUSG00000036098.16	ENSMUST00000189897.2	3339	26	24417	-2111	1341	-2	3prime_fragment	FALSE	canonical	2	13	junction_7	2.70801280154532	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGCCTCTGACATCTT	NA	False	NA	-2	True	NA	NA	NA	10193551	10185637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10187830_10187962_10188038_10189071_10189178_10189509_10189585_10189805_10189894_10191422_10191675_10192123_10192292_10192380_10192470_10193105_10193175_10193424
ENSMUSG00000036098.16_19	chr19	-	2952	7	ISM	ENSMUSG00000036098.16	ENSMUST00000186854.7	1517	13	2601	-2022	2601	-6	3prime_fragment	FALSE	canonical	2	15	junction_6	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCACTTGCCTCTGACA	NA	False	NA	-6	True	NA	NA	NA	10192291	10185641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10187830_10187962_10188038_10189071_10189178_10189509_10189585_10189805_10189894_10191422_10191675_10192123
ENSMUSG00000036098.16_28	chr19	-	2649	6	ISM	ENSMUSG00000036098.16	ENSMUST00000186854.7	1517	13	3353	-2022	3353	-6	3prime_fragment	FALSE	canonical	2	17	junction_4	1.62480768092719	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCACTTGCCTCTGACA	NA	False	NA	-6	True	NA	NA	NA	10191539	10185641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10187830_10187962_10188038_10189071_10189178_10189509_10189585_10189805_10189894_10191422
ENSMUSG00000036098.16_3	chr19	-	3268	10	ISM	ENSMUSG00000036098.16	ENSMUST00000186854.7	1517	13	1301	-2016	1301	-12	3prime_fragment	FALSE	canonical	2	8	junction_8	3.77450838921401	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTATCTGCACTTGCCT	NA	False	NA	-12	True	NA	NA	NA	10193591	10185647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10187830_10187962_10188038_10189071_10189178_10189509_10189585_10189805_10189894_10191422_10191675_10192123_10192292_10192380_10192467_10193105_10193175_10193424
ENSMUSG00000036098.16_5	chr19	-	453	1	ISM	ENSMUSG00000036098.16	ENSMUST00000088013.12	5674	27	32024	0	8804	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCTCTGACATCTTCT	NA	False	NA	0	True	NA	NA	NA	10186088	10185635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_10185600_10186100
ENSMUSG00000036098.16_6	chr19	-	5570	26	NIC	ENSMUSG00000036098.16	novel	5674	27	NA	NA	18	-2	combination_of_known_junctions	FALSE	canonical	2	5	junction_20	4.51911495759955	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGCCTCTGACATCTT	7163	False	NA	-2	True	NA	NA	NA	10218091	10185637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_10187830_10187962_10188038_10189071_10189178_10189509_10189585_10189805_10189894_10191422_10191675_10192123_10192292_10192380_10192467_10193105_10193175_10193424_10193514_10193783_10193857_10193981_10194143_10194783_10194894_10195511_10195624_10195827_10196029_10196401_10196493_10196885_10196997_10197158_10197236_10198541_10198738_10200480_10200605_10200680_10200932_10201735_10202016_10202812_10202875_10206016_10206281_10206383_10206472_10217922
ENSMUSG00000036098.16_7	chr19	-	5596	26	FSM	ENSMUSG00000036098.16	ENSMUST00000189897.2	3339	26	-145	-2112	-1	-1	multi-exon	FALSE	canonical	2	5	junction_20	4.43693587963585	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGCCTCTGACATCTTC	7141	False	NA	-1	True	NA	NA	NA	10218113	10185636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10187830_10187962_10188038_10189071_10189178_10189509_10189585_10189805_10189894_10191422_10191675_10192123_10192292_10192380_10192470_10193105_10193175_10193424_10193514_10193783_10193857_10193981_10194143_10194783_10194894_10195511_10195624_10195827_10196029_10196401_10196493_10196885_10196997_10197158_10197236_10198541_10198738_10200480_10200605_10200680_10200932_10201735_10202016_10202812_10202875_10206016_10206281_10206383_10206472_10217922
ENSMUSG00000036099.17_13	chr10	-	2439	12	NNC	ENSMUSG00000036099.17	novel	11138	12	NA	NA	-2	1134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	18.2779277990723	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGATGGCCTTGATTGTT	3433	False	NA	-7	True	AATAAA	-11	NA	93871641	93806043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93826001_93826146_93829375_93829529_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
ENSMUSG00000036099.17_24	chr10	-	3718	5	ISM	ENSMUSG00000036099.17	ENSMUST00000118205.8	3705	12	-16	22110	-9	-366	5prime_fragment	FALSE	canonical	3	46	junction_1	7.3824115301167	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATATTCCTTGAGATTTT	3454	False	NA	NA	False	AATAAA	-19	NA	93871620	93829744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
ENSMUSG00000036099.17_4	chr10	-	2937	12	FSM	ENSMUSG00000036099.17	ENSMUST00000119818.8	11138	12	26	8175	10	-1597	multi-exon	FALSE	canonical	3	20	junction_7	12.5467719993354	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTACCACAACCGATGTGT	3421	False	NA	-11	True	AATAAA	-8	NA	93871653	93805558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93826001_93826150_93829378_93829529_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
ENSMUSG00000036099.17_8	chr10	-	2920	12	FSM	ENSMUSG00000036099.17	ENSMUST00000047711.13	4479	12	-34	1593	-5	-1593	multi-exon	FALSE	canonical	3	26	junction_7	11.4039285676849	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACAACCGATGTGTGCTG	3430	False	NA	-7	True	AATAAA	-12	NA	93871644	93805554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93826001_93826150_93829378_93829517_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
ENSMUSG00000036099.17_9	chr10	-	3953	1	NIC	ENSMUSG00000036099.17	novel	11138	12	NA	NA	868	-1588	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCGATGTGTGCTGGGGTT	NA	False	NA	-2	True	AATAAA	-17	NA	93809502	93805549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_93805500_93809500
ENSMUSG00000036103.10_0	chr18	+	3322	10	FSM	ENSMUSG00000036103.10	ENSMUST00000234965.2	8024	10	30	4672	-23	-27	multi-exon	FALSE	canonical	3	13	junction_7	3.52066211505664	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTAATCTGTCCAGCTG	-1	True	NA	NA	False	AATAAA	-21	NA	9707624	9877972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_9707760_9720920_9720972_9840238_9840362_9846786_9846886_9848103_9849151_9858545_9859035_9859837_9859975_9866743_9866854_9874788_9874935_9876987
ENSMUSG00000036104.13_0	chr1	+	4216	24	FSM	ENSMUSG00000036104.13	ENSMUST00000037649.6	4243	24	25	2	-4	-2	multi-exon	FALSE	canonical	3	104	junction_1	17.6995509005001	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGTGGACTTGTGGCT	3054	False	NA	16	True	AATAAA	-13	NA	127796534	127871603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_127796567_127796661_127796718_127801816_127801893_127816892_127817026_127818754_127818834_127829315_127829436_127831408_127831575_127837587_127837688_127843375_127843458_127845957_127846027_127847304_127847379_127852464_127852558_127853011_127853179_127855196_127855287_127855685_127855859_127858126_127858182_127858443_127858816_127862153_127862292_127865074_127865303_127865725_127865823_127865934_127866039_127866311_127866428_127866782_127866886_127870110
ENSMUSG00000036106.16_1	chr15	+	1676	9	NNC	ENSMUSG00000036106.16	novel	1830	8	NA	NA	-6404	-2	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	42.0979141407267	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTCCTGTCTGCCCCCTG	8466	False	NA	2	True	AATAAA	-12	NA	84547416	84587871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_84547463_84565400_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
ENSMUSG00000036106.16_9	chr15	+	1819	8	FSM	ENSMUSG00000036106.16	ENSMUST00000065499.5	1830	8	9	2	9	-2	multi-exon	FALSE	canonical	3	134	junction_7	10.3844467687921	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTCCTGTCTGCCCCCTG	NA	False	NA	2	True	AATAAA	-12	NA	84565211	84587871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
ENSMUSG00000036109.18_0	chrX	-	1733	8	NNC	ENSMUSG00000036109.18	novel	2243	8	NA	NA	202	10	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	8.22638859936455	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTATAGTGTTTTCTTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	50294507	50209318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50253294_50253542_50294438
ENSMUSG00000036109.18_2	chrX	-	1812	8	FSM	ENSMUSG00000036109.18	ENSMUST00000114876.9	2243	8	65	366	65	6	multi-exon	FALSE	canonical	3	6	junction_7	7.54848275064166	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGCTATAGTGTTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	50294802	50209322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50253294_50253542_50294650
ENSMUSG00000036109.18_3	chrX	-	1490	7	FSM	ENSMUSG00000036109.18	ENSMUST00000114875.8	4649	7	-23	3182	-23	1	multi-exon	FALSE	canonical	0	0	junction_6	9.88966913276453	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTTTCATGCTATAGTG	NA	False	NA	NA	False	ATTAAA	-14	NA	50294732	50209327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50294650
ENSMUSG00000036111.9_0	chr7	-	958	4	FSM	ENSMUSG00000036111.9	ENSMUST00000207178.2	912	4	58	-104	58	1	multi-exon	FALSE	canonical	3	61	junction_1	6.37704215656966	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGACTGCATTGTTCAC	NA	False	NA	-3	True	ATTAAA	-19	NA	108774356	108737777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_108738184_108739788_108739915_108742662_108742877_108774144
ENSMUSG00000036112.16_0	chr10	-	1958	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	28	2438	-2	1	multi-exon	FALSE	canonical	3	2022	junction_3	150.158882521148	2454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGATACATTTTAATGTGT	NA	False	NA	-15	True	AATAAA	-17	NA	93725648	93696788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
ENSMUSG00000036112.16_3	chr10	-	1955	11	NIC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	3	309	junction_10	575.406508479006	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGATACATTTTAATGTGT	NA	False	NA	-15	True	AATAAA	-17	NA	93725648	93696788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722961_93725399
ENSMUSG00000036114.4_0	chr4	-	830	2	FSM	ENSMUSG00000036114.4	ENSMUST00000038434.4	856	2	26	0	26	0	multi-exon	FALSE	canonical	3	191	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCTGTTGTGTAAG	1	True	NA	-17	True	AATAAA	-14	NA	41713508	41712032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41712815_41713460
ENSMUSG00000036114.4_2	chr4	-	1477	1	NIC	ENSMUSG00000036114.4	novel	856	2	NA	NA	25	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCTGTTGTGTAAG	0	True	NA	-17	True	AATAAA	-14	NA	41713509	41712032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_41712000_41713500
ENSMUSG00000036120.11_0	chr8	-	1227	9	FSM	ENSMUSG00000036120.11	ENSMUST00000075724.9	3609	9	-80	2462	-80	-2	multi-exon	FALSE	canonical	3	42	junction_5	11.7626261948597	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTCTTCAGGGTGCCTCC	9465	False	NA	0	True	AATAAA	-16	NA	70591884	70585917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588215_70588282_70588859_70588941_70590678_70590874_70591570
ENSMUSG00000036120.11_1	chr8	-	3865	8	NIC	ENSMUSG00000036120.11	novel	3609	9	NA	NA	-92	-10	intron_retention	TRUE	canonical	3	52	junction_5	10.222025039999	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAAAAACACTTTAATGT	9453	False	NA	-22	True	ATTAAA	-12	NA	70591896	70583465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588282_70588859_70588941_70590678_70590874_70591570
ENSMUSG00000036120.11_2	chr8	-	1613	8	NIC	ENSMUSG00000036120.11	novel	3609	9	NA	NA	-51	287	intron_retention	FALSE	canonical	3	42	junction_4	12.4638252063927	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAATCAATAGCACCTT	9494	False	NA	NA	False	ACTAAA	-23	NA	70591855	70585628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70588042_70588215_70588282_70588859_70588941_70590678_70590874_70591570
ENSMUSG00000036120.11_3	chr8	-	1256	9	FSM	ENSMUSG00000036120.11	ENSMUST00000212320.2	1121	9	-138	3	-80	-3	multi-exon	FALSE	canonical	2	7	junction_5	20.7590341779188	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGTCTTCAGGGTGCCTC	9465	False	NA	-1	True	AATAAA	-15	NA	70591884	70585918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588185_70588282_70588859_70588941_70590678_70590874_70591570
ENSMUSG00000036136.10_0	chr12	+	2670	2	FSM	ENSMUSG00000036136.10	ENSMUST00000041133.10	3088	2	104	314	104	-314	multi-exon	FALSE	canonical	2	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTAGTCCTCAGGTGTT	NA	False	NA	NA	False	TATAAA	-16	NA	31123963	31129936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_31125322_31128624
ENSMUSG00000036138.17_1	chr9	+	1614	12	FSM	ENSMUSG00000036138.17	ENSMUST00000039784.12	1762	12	143	5	-20	-4	multi-exon	FALSE	canonical	3	245	junction_2	23.8777880116768	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGGTGCTTGTCATTTC	7871	False	NA	23	True	AGTAAA	-14	NA	119170502	119179360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119173531_119173575_119175535_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
ENSMUSG00000036138.17_11	chr9	+	1559	11	NIC	ENSMUSG00000036138.17	novel	1762	12	NA	NA	-8	-4	combination_of_known_splicesites	FALSE	canonical	2	7	junction_4	84.7362968272747	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGGTGCTTGTCATTTC	7883	False	NA	23	True	AGTAAA	-14	NA	119170514	119179360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119175535_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
ENSMUSG00000036138.17_14	chr9	+	3579	11	NIC	ENSMUSG00000036138.17	novel	3668	12	NA	NA	19	-4	intron_retention	TRUE	canonical	3	245	junction_2	25.0047995392885	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGGTGCTTGTCATTTC	7867	False	NA	23	True	AGTAAA	-14	NA	119170498	119179360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119173531_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
ENSMUSG00000036139.7_0	chr15	+	1176	2	ISM	ENSMUSG00000036139.7	ENSMUST00000001706.7	2374	3	4526	659	4526	-659	3prime_fragment	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTTTTTTCCTTCTTTC	125	False	NA	NA	False	AATAAA	-16	NA	102889992	102892872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102890623_102892326
ENSMUSG00000036155.14_0	chr1	+	2976	18	FSM	ENSMUSG00000036155.14	ENSMUST00000038361.11	8436	18	216	5244	206	-612	multi-exon	FALSE	canonical	0	0	junction_2	2.16930457818656	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAATTGGGAAGGACTTT	NA	False	NA	NA	False	AAAACA	-20	NA	127132970	127410829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_127133165_127177526_127177577_127234370_127234754_127248340_127248503_127292884_127292962_127294139_127294230_127310657_127310730_127312504_127312667_127315079_127315250_127318480_127318616_127325243_127325378_127339863_127339998_127373978_127374129_127387572_127387720_127396928_127397046_127399237_127399313_127407201_127407360_127410263
ENSMUSG00000036155.14_2	chr1	+	2696	1	ISM	ENSMUSG00000036155.14	ENSMUST00000038361.11	8436	18	279523	1100	177779	-1100	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCGTGAATTAGAGTTTA	NA	False	NA	NA	False	ATTAAA	-19	NA	127412277	127414973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_127412300_127415000
ENSMUSG00000036158.13_3	chr15	-	3599	5	ISM	ENSMUSG00000036158.13	ENSMUST00000109255.3	4144	8	10145	0	10145	0	3prime_fragment	FALSE	canonical	1	1	junction_2	1.11803398874989	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTCCGAGTCCGCATCT	NA	False	NA	NA	False	AATAAA	-14	NA	93407259	93396994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_93399185_93400840_93401708_93402909_93403097_93406433_93406638_93407108
ENSMUSG00000036158.13_4	chr15	-	4069	8	NIC	ENSMUSG00000036158.13	novel	4085	8	NA	NA	5	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	1.38505138783324	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAACCACCTTTCCGAGT	NA	False	NA	NA	False	AATAAA	-6	NA	93493767	93397002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_93399185_93400840_93401708_93402909_93403097_93406433_93406638_93407108_93407247_93408551_93408666_93410330_93410515_93493574
ENSMUSG00000036158.13_5	chr15	-	2697	2	ISM	ENSMUSG00000036158.13	ENSMUST00000109255.3	4144	8	16055	2	16055	-2	3prime_fragment	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTTTCCGAGTCCGCAT	NA	False	NA	NA	False	AATAAA	-12	NA	93401349	93396996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_93399185_93400840
ENSMUSG00000036160.14_2	chr2	-	2616	5	FSM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	15	340	-14	-3	multi-exon	FALSE	canonical	3	256	junction_1	26.2154534578367	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCCCATGTGTTCGTAT	NA	False	NA	-9	True	NA	NA	NA	26792876	26780786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
ENSMUSG00000036160.14_3	chr2	-	2072	2	ISM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	9889	343	-379	-6	3prime_fragment	FALSE	canonical	3	256	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACACTCCCATGTGTTCG	NA	False	NA	-12	True	NA	NA	NA	26783002	26780789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26782738_26782878
ENSMUSG00000036160.14_4	chr2	-	1482	1	NIC	ENSMUSG00000036160.14	novel	1372	2	NA	NA	-83	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCCCATGTGTTCGTAT	NA	False	NA	-9	True	NA	NA	NA	26782268	26780786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26780800_26782300
ENSMUSG00000036160.14_5	chr2	-	2429	4	ISM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	2963	340	-148	-3	3prime_fragment	FALSE	canonical	3	256	junction_1	30.2250815640844	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCCCATGTGTTCGTAT	NA	False	NA	-9	True	NA	NA	NA	26789928	26780786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740
ENSMUSG00000036167.17_0	chr15	+	3599	7	NIC	ENSMUSG00000036167.17	novel	3351	9	NA	NA	-17	393	combination_of_known_splicesites	FALSE	canonical	3	68	junction_5	39.6722685120083	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAATAAATTCGTCTCCT	NA	False	NA	NA	False	AATAAA	-13	NA	93296260	93389784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
ENSMUSG00000036167.17_1	chr15	+	3719	8	FSM	ENSMUSG00000036167.17	ENSMUST00000109256.11	1154	8	30	-2595	-17	393	multi-exon	FALSE	canonical	3	108	junction_5	28.6199587843226	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAATAAATTCGTCTCCT	NA	False	NA	NA	False	AATAAA	-13	NA	93296260	93389784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ENSMUSG00000036167.17_12	chr15	+	3768	9	FSM	ENSMUSG00000036167.17	ENSMUST00000068457.15	3351	9	-12	-405	-9	393	multi-exon	FALSE	canonical	3	14	junction_4	61.4527257328754	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAATAAATTCGTCTCCT	NA	False	NA	NA	False	AATAAA	-13	NA	93296268	93389784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ENSMUSG00000036167.17_3	chr15	+	3806	8	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	-17	393	combination_of_known_splicesites	FALSE	canonical	3	55	junction_3	53.2326430464831	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAATAAATTCGTCTCCT	NA	False	NA	NA	False	AATAAA	-13	NA	93296260	93389784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
ENSMUSG00000036167.17_34	chr15	+	1767	1	Genic_Genomic	ENSMUSG00000036167.17	novel	NA	NA	NA	NA	57196	397	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAATTCGTCTCCTCTCG	NA	False	NA	NA	False	AATAAA	-17	NA	93388021	93389788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_93388000_93389800
ENSMUSG00000036167.17_4	chr15	+	3908	9	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	1	393	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	46.1078897803836	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAATAAATTCGTCTCCT	NA	False	NA	NA	False	AATAAA	-13	NA	93296278	93389784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ENSMUSG00000036167.17_6	chr15	+	3520	6	NIC	ENSMUSG00000036167.17	novel	3351	9	NA	NA	-18	393	combination_of_known_splicesites	FALSE	canonical	3	13	junction_4	63.5282614274938	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAATAAATTCGTCTCCT	NA	False	NA	NA	False	AATAAA	-13	NA	93296259	93389784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93362985_93363127_93386854
ENSMUSG00000036168.16_0	chr10	+	3591	14	NIC	ENSMUSG00000036168.16	novel	3656	16	NA	NA	41	-7	intron_retention	FALSE	canonical	0	0	junction_7	1.73716766009788	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTATTAAGCCTTCTAG	NA	False	NA	NA	False	AATAAA	-10	NA	93385934	93420182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_93386190_93391380_93391446_93398592_93398757_93399066_93399148_93401655_93401808_93403525_93403619_93405737_93405796_93406708_93406782_93409872_93410025_93411134_93411271_93414570_93414754_93415623_93415830_93417594_93417689_93418303
ENSMUSG00000036180.16_0	chr8	-	3416	13	FSM	ENSMUSG00000036180.16	ENSMUST00000116463.4	3363	13	-54	1	-54	0	multi-exon	FALSE	canonical	3	580	junction_12	181.0697187703	863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70426975	70361306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ENSMUSG00000036180.16_11	chr8	-	3489	13	FSM	ENSMUSG00000036180.16	ENSMUST00000065169.12	3812	13	136	187	-15	0	multi-exon	FALSE	canonical	3	188	junction_6	322.35922853584	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70448898	70361306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369102_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
ENSMUSG00000036180.16_16	chr8	-	3343	12	NIC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	-56	0	combination_of_known_splicesites	FALSE	canonical	3	148	junction_2	313.771143635791	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70426977	70361306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70362625_70364326_70364520_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ENSMUSG00000036180.16_17	chr8	-	3425	13	NIC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	3	132	junction_6	298.384399726259	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70426975	70361306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369209_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ENSMUSG00000036180.16_20	chr8	-	3416	12	NIC	ENSMUSG00000036180.16	novel	3622	13	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	148	junction_2	348.613831202643	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70448903	70361306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70362625_70364326_70364520_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
ENSMUSG00000036180.16_3	chr8	-	3490	13	FSM	ENSMUSG00000036180.16	ENSMUST00000212478.2	3622	13	132	0	-19	0	multi-exon	FALSE	canonical	3	316	junction_12	239.231916186412	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70448902	70361306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
ENSMUSG00000036180.16_5	chr8	-	3420	13	NIC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	3	188	junction_6	285.503308017418	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70426976	70361306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369102_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
ENSMUSG00000036180.16_8	chr8	-	3505	13	NIC	ENSMUSG00000036180.16	novel	3622	13	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	132	junction_6	333.513492980419	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70448908	70361306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369209_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
ENSMUSG00000036181.3_0	chr13	+	1555	1	FSM	ENSMUSG00000036181.3	ENSMUST00000040914.3	1560	1	-1	6	-1	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCACTGTTGGACTCTTT	NA	False	NA	10	True	AATAAA	-15	NA	23922789	23924344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_23922800_23924300
ENSMUSG00000036185.10_0	chr17	-	1027	2	NIC	ENSMUSG00000036185.10	novel	618	4	NA	NA	17	0	intron_retention	FALSE	canonical	3	47	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246618	35244934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35245763_35246419
ENSMUSG00000036185.10_5	chr17	-	608	5	FSM	ENSMUSG00000036185.10	ENSMUST00000174037.8	665	5	39	18	39	0	multi-exon	FALSE	canonical	3	19	junction_4	14.8218588577816	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	AATAAA	-17	NA	35246851	35244952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419_35246565_35246772
ENSMUSG00000036185.10_7	chr17	-	643	5	NIC	ENSMUSG00000036185.10	novel	665	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	14.8218588577816	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	AATAAA	-17	NA	35246890	35244952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419_35246561_35246772
ENSMUSG00000036186.6_0	chr2	+	1581	5	FSM	ENSMUSG00000036186.6	ENSMUST00000074240.4	1622	5	37	4	0	-4	multi-exon	FALSE	canonical	3	50	junction_4	8.55496931613434	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACCCGGGTATGTGGATC	2472	False	NA	13	True	AATAAA	-13	NA	26518505	26526505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26518712_26522615_26522751_26524799_26524908_26524998_26525176_26525550
ENSMUSG00000036186.6_3	chr2	+	1440	4	NIC	ENSMUSG00000036186.6	novel	1622	5	NA	NA	34	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	24.0554914035583	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCGGGTATGTGGATCC	2506	False	NA	14	True	AATAAA	-14	NA	26518539	26526506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_26518712_26522615_26522751_26524998_26525176_26525550
ENSMUSG00000036188.5_0	chr12	+	2405	10	FSM	ENSMUSG00000036188.5	ENSMUST00000041640.5	2456	10	45	6	1	-6	multi-exon	FALSE	canonical	3	149	junction_5	20.5882622678524	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTCATCTTGTTTCATA	NA	False	NA	15	True	AATAAA	-14	NA	36207157	36247284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_36207423_36215868_36215934_36220447_36220587_36226578_36226678_36232346_36232508_36236724_36236940_36237648_36237785_36243668_36243798_36244982_36245113_36246218
ENSMUSG00000036197.17_0	chr15	-	3030	1	Genic_Genomic	ENSMUSG00000036197.17	novel	NA	NA	NA	NA	32382	2	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTCTAAATTTTTTTTT	NA	False	NA	-8	True	AATAAA	-15	NA	93140650	93137620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_93137600_93140600
ENSMUSG00000036197.17_1	chr15	-	6513	7	FSM	ENSMUSG00000036197.17	ENSMUST00000230063.2	4427	7	26	-2112	-2	0	multi-exon	FALSE	canonical	3	41	junction_3	8.55699843532896	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTGTCTAAATTTTTTT	NA	False	NA	-10	True	AATAAA	-13	NA	93173034	93137622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_93143011_93145739_93145913_93146239_93146364_93152181_93152434_93156945_93157072_93159627_93159800_93172756
ENSMUSG00000036197.17_2	chr15	-	5755	4	ISM	ENSMUSG00000036197.17	ENSMUST00000230063.2	4427	7	20811	-2114	20783	2	3prime_fragment	FALSE	canonical	3	41	junction_3	10.6144555520604	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTCTAAATTTTTTTTT	NA	False	NA	-8	True	AATAAA	-15	NA	93152249	93137620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_93143011_93145739_93145913_93146239_93146364_93152181
ENSMUSG00000036197.17_4	chr15	-	6595	8	FSM	ENSMUSG00000036197.17	ENSMUST00000057896.5	1891	8	9	-4713	9	0	multi-exon	FALSE	canonical	3	19	junction_7	17.2827624398133	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTGTCTAAATTTTTTT	NA	False	NA	-10	True	AATAAA	-13	NA	93173023	93137622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_93143011_93145739_93145913_93146239_93146364_93152181_93152434_93156945_93157072_93159627_93159800_93163751_93163845_93172756
ENSMUSG00000036199.10_3	chr8	-	484	4	ISM	ENSMUSG00000036199.10	ENSMUST00000110167.5	1251	5	911	4	911	-4	3prime_fragment	FALSE	canonical	3	6124	junction_2	115.905133622286	840	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTTGACTCTATAGTG	NA	False	NA	-24	True	AATAAA	-13	NA	70354297	70346833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_70347061_70347153_70347226_70347891_70347971_70354191
ENSMUSG00000036199.10_7	chr8	-	482	4	NNC	ENSMUSG00000036199.10	novel	1251	5	NA	NA	912	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2953.33171557518	54	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTTGACTCTATAGTG	NA	False	NA	-24	True	AATAAA	-13	NA	70354296	70346833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_70347061_70347153_70347226_70347891_70347971_70354192
ENSMUSG00000036202.17_10	chr2	+	8448	35	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	39	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	126.478033296594	81	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTACATACCACTGCC	NA	False	NA	4	True	ATTAAA	-16	NA	51962882	52012124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ENSMUSG00000036202.17_14	chr2	+	8220	36	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	3	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	132.856178183902	181	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATACCACTGCCTTTTTT	NA	False	NA	10	True	ATTAAA	-22	NA	51962846	52012130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ENSMUSG00000036202.17_15	chr2	+	8133	35	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_16	144.087250696058	91	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAATGTTACATACCACT	NA	False	NA	1	True	ATTAAA	-13	NA	51962846	52012121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ENSMUSG00000036202.17_173	chr2	+	3493	7	ISM	ENSMUSG00000036202.17	ENSMUST00000112693.10	8509	36	38656	16	27	-14	3prime_fragment	FALSE	canonical	3	521	junction_3	89.7100266909384	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGTAAATTTCACCAAGT	NA	False	NA	8	True	ATTAAA	-3	NA	52001499	52012379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ENSMUSG00000036202.17_174	chr2	+	2890	6	FSM	ENSMUSG00000036202.17	ENSMUST00000152178.2	2784	6	-114	8	-114	-8	multi-exon	FALSE	canonical	3	196	junction_2	215.141441846986	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTCACCAAGTAGTTAG	NA	False	NA	14	True	ATTAAA	-9	NA	52002030	52012385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_52003013_52006259_52006407_52006846_52006963_52009028_52009183_52010271_52010381_52011003
ENSMUSG00000036206.13_0	chr1	+	3690	6	FSM	ENSMUSG00000036206.13	ENSMUST00000066279.11	4995	6	30	1275	-8	-1275	multi-exon	FALSE	canonical	3	96	junction_1	14.3164241345386	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTTATGTTCTTTAAAG	NA	False	NA	22	True	AGTAAA	-16	NA	88998166	89081515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_88998320_89034979_89035059_89065280_89065526_89071271_89073629_89079921_89080111_89080848
ENSMUSG00000036206.13_16	chr1	+	2030	3	ISM	ENSMUSG00000036206.13	ENSMUST00000066279.11	4995	6	74317	1276	74279	-1276	3prime_fragment	FALSE	canonical	3	112	junction_2	11.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTTTATGTTCTTTAAA	1971	False	NA	21	True	AGTAAA	-15	NA	89072453	89081514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_89073629_89079921_89080111_89080848
ENSMUSG00000036208.14_0	chr16	+	2711	9	FSM	ENSMUSG00000036208.14	ENSMUST00000048788.14	2866	9	-1	156	-1	-156	multi-exon	FALSE	canonical	3	32	junction_1	9.69455388349562	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCATTATCTAATCTTC	NA	False	NA	31	True	ATTAAA	-39	NA	44544662	44557491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_44544832_44547390_44547546_44549604_44549685_44549944_44550077_44550482_44550561_44551694_44552060_44552420_44552483_44554903_44555161_44556078
ENSMUSG00000036208.14_3	chr16	+	5845	9	NNC	ENSMUSG00000036208.14	novel	3743	6	NA	NA	239	2493	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	17.4982141945971	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAACTTGAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-7	NA	44544958	44560140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_44545613_44547390_44547546_44549604_44549685_44549944_44550077_44550482_44550561_44551694_44552060_44552420_44552483_44554903_44555161_44556078
ENSMUSG00000036208.14_5	chr16	+	2542	8	ISM	ENSMUSG00000036208.14	ENSMUST00000048788.14	2866	9	2726	157	-92	-157	3prime_fragment	FALSE	canonical	3	45	junction_5	6.67312612235809	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACCATTATCTAATCTT	NA	False	NA	30	True	ATTAAA	-38	NA	44547389	44557490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_44547546_44549604_44549685_44549944_44550077_44550482_44550561_44551694_44552060_44552420_44552483_44554903_44555161_44556078
ENSMUSG00000036208.14_7	chr16	+	2057	4	ISM	ENSMUSG00000036208.14	ENSMUST00000048788.14	2866	9	7070	157	4252	-157	3prime_fragment	FALSE	canonical	3	45	junction_1	8.33999733546454	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACCATTATCTAATCTT	NA	False	NA	30	True	ATTAAA	-38	NA	44551733	44557490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_44552060_44552420_44552483_44554903_44555161_44556078
ENSMUSG00000036214.15_0	chr17	+	958	3	FSM	ENSMUSG00000036214.15	ENSMUST00000040177.7	976	3	18	0	-9	0	multi-exon	FALSE	canonical	0	0	junction_1	121.5	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269501	37276514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_37269595_37275248_37275325_37275725
ENSMUSG00000036214.15_1	chr17	+	1072	3	FSM	ENSMUSG00000036214.15	ENSMUST00000173814.2	1020	3	-52	0	-3	0	multi-exon	FALSE	canonical	3	19	junction_1	112	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269480	37276514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_37269688_37275248_37275325_37275725
ENSMUSG00000036214.15_2	chr17	+	1296	3	FSM	ENSMUSG00000036214.15	ENSMUST00000172672.8	652	3	37	-681	15	0	multi-exon	FALSE	canonical	3	30	junction_1	106.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269547	37276514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_37269979_37275248_37275325_37275725
ENSMUSG00000036214.15_5	chr17	+	541	1	ISM	ENSMUSG00000036214.15	ENSMUST00000040177.7	976	3	6490	0	1260	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	4834	False	NA	17	True	AATAAA	-17	NA	37275973	37276514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_37276000_37276500
ENSMUSG00000036218.17_0	chr15	+	3957	10	NNC	ENSMUSG00000036218.17	novel	3102	10	NA	NA	-75	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.13148067702788	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCGAAACATTGCTTCTA	NA	False	NA	NA	False	AATAAA	-4	NA	92294686	92669694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_92295387_92297627_92297715_92299809_92299920_92575380_92575639_92578321_92578425_92641451_92641551_92644122_92644186_92650578_92650681_92655518_92655636_92667376
ENSMUSG00000036223.17_0	chr18	-	1111	7	NNC	ENSMUSG00000036223.17	novel	2605	7	NA	NA	3	-298	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	150.093766988802	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTTCAAAACGTAC	6768	False	NA	-19	True	AGTAAA	-16	NA	74340847	74329847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339833_74339956_74340664
ENSMUSG00000036223.17_4	chr18	-	1061	7	FSM	ENSMUSG00000036223.17	ENSMUST00000177604.2	2605	7	66	1478	-5	-298	multi-exon	FALSE	canonical	3	429	junction_6	32.9768437274131	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTTCAAAACGTAC	6792	False	NA	-19	True	AGTAAA	-16	NA	74340823	74329847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340664
ENSMUSG00000036223.17_6	chr18	-	3613	6	NIC	ENSMUSG00000036223.17	novel	2605	7	NA	NA	-4	-297	intron_retention	FALSE	canonical	3	429	junction_5	34.6040460062115	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATTTTCAAAACGTACT	6793	False	NA	-18	True	AGTAAA	-17	NA	74340822	74329846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_74330123_74330584_74330755_74332970_74335759_74337334_74337460_74339859_74339956_74340664
ENSMUSG00000036223.17_7	chr18	-	167	1	ISM	ENSMUSG00000036223.17	ENSMUST00000040188.16	2630	7	10845	1469	10813	-289	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAACGTACTGCCTTTAG	2438	False	NA	-10	True	AGTAAA	-25	NA	74330005	74329838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_74329800_74330000
ENSMUSG00000036223.17_8	chr18	-	1121	7	FSM	ENSMUSG00000036223.17	ENSMUST00000040188.16	2630	7	42	1467	10	-287	multi-exon	FALSE	canonical	3	11	junction_6	177.375699826354	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACGTACTGCCTTTAGGA	6807	False	NA	-8	True	AGTAAA	-27	NA	74340808	74329836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340600
ENSMUSG00000036225.16_0	chr18	-	2734	5	FSM	ENSMUSG00000036225.16	ENSMUST00000168989.9	2777	5	39	4	39	1	multi-exon	FALSE	canonical	2	9	junction_4	2.1650635094611	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATCACACCTGTATTCA	NA	False	NA	-7	True	AATAAA	-18	NA	15196636	15102460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_15102753_15107036_15107343_15119392_15119538_15140752_15140932_15194824
ENSMUSG00000036241.4_0	chr4	+	1978	5	FSM	ENSMUSG00000036241.4	ENSMUST00000040008.4	3600	5	-148	1770	-148	574	multi-exon	FALSE	canonical	3	428	junction_4	37.5857353260516	632	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAACCGAGCACTTGGTT	-9	True	NA	26	True	AATAAA	-15	NA	41135594	41191610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_41136247_41174040_41174128_41183244_41183343_41189151_41189287_41190604
ENSMUSG00000036242.16_0	chr14	-	2746	8	FSM	ENSMUSG00000036242.16	ENSMUST00000036972.14	8831	8	18	6067	6	-351	multi-exon	FALSE	canonical	3	15	junction_3	7.71693076346829	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTTTTCTTGGTTTGGA	NA	False	NA	0	True	AATAAA	-19	NA	50020822	49919475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_49919874_49920068_49920204_49926723_49926756_49988875_49989140_50005865_50006058_50007835_50008085_50010318_50011697_50020724
ENSMUSG00000036242.16_2	chr14	-	2123	7	ISM	ENSMUSG00000036242.16	ENSMUST00000036972.14	8831	8	9669	6067	9657	-351	3prime_fragment	FALSE	canonical	3	15	junction_3	7.92499561864583	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTTTTCTTGGTTTGGA	NA	False	NA	0	True	AATAAA	-19	NA	50011171	49919475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_49919874_49920068_49920204_49926723_49926756_49988875_49989140_50005865_50006058_50007835_50008085_50010318
ENSMUSG00000036242.16_4	chr14	-	3693	6	NNC	ENSMUSG00000036242.16	novel	8831	8	NA	NA	13	-13553	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	12.2245654319489	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCCTTTGGGTTTCTAT	NA	False	NA	NA	False	AGTAAA	-16	NA	50020815	49979898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_49981418_49988875_49989140_50005865_50006058_50007835_50008085_50010318_50011697_50020724
ENSMUSG00000036242.16_8	chr14	-	3556	5	ISM	ENSMUSG00000036242.16	ENSMUST00000118129.2	3100	8	15	68367	15	-21146	5prime_fragment	FALSE	canonical	3	28	junction_3	3.57071421427143	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATATTGATTTGTGAAC	NA	False	NA	NA	False	AATAAA	-11	NA	50020813	49987491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_49989140_50005865_50006058_50007835_50008085_50010318_50011697_50020724
ENSMUSG00000036246.15_0	chr8	+	3893	21	FSM	ENSMUSG00000036246.15	ENSMUST00000036074.15	3933	21	20	20	9	-20	multi-exon	FALSE	canonical	1	2	junction_20	2.88790581563873	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTTGTCTGTTCTTGCA	NA	False	NA	NA	False	NA	NA	NA	70261348	70274500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70261471_70262423_70262509_70263279_70263368_70263451_70263510_70263807_70263934_70264017_70264083_70264182_70264291_70266265_70266347_70266431_70266603_70266687_70266826_70267044_70267242_70268083_70268194_70268263_70268342_70268700_70268779_70268858_70269014_70269386_70269576_70269652_70269791_70269882_70270080_70270372_70270761_70273083_70273151_70273246
ENSMUSG00000036246.15_14	chr8	+	2878	13	ISM	ENSMUSG00000036246.15	ENSMUST00000036074.15	3933	21	5084	321	-123	216	3prime_fragment	FALSE	canonical	1	2	junction_12	3.17433282579015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGTGCTTGCTGTAAAGC	NA	False	NA	NA	False	AATAAA	-35	NA	70266412	70274199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70266603_70266687_70266826_70267044_70267242_70268083_70268194_70268263_70268342_70268700_70268779_70268858_70269014_70269386_70269576_70269652_70269791_70269882_70270080_70270372_70270761_70273083_70273151_70273246
ENSMUSG00000036246.15_2	chr8	+	3059	19	FSM	ENSMUSG00000036246.15	ENSMUST00000123453.2	3443	19	4	380	4	-380	multi-exon	TRUE	canonical	2	4	junction_6	2.61524495465329	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAATGTATATTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	70261343	70271242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70261471_70262423_70262509_70263279_70263368_70263451_70263510_70263807_70263934_70264017_70264083_70264182_70264291_70266265_70266347_70266431_70266603_70266687_70266826_70267044_70267242_70268083_70268194_70268263_70268342_70268700_70268779_70268858_70269014_70269386_70269576_70269652_70269791_70269882_70270080_70270372
ENSMUSG00000036246.15_9	chr8	+	2677	9	NIC	ENSMUSG00000036246.15	novel	3933	21	NA	NA	1294	216	intron_retention	FALSE	canonical	1	2	junction_8	2.89125837655509	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGTGCTTGCTGTAAAGC	NA	False	NA	NA	False	AATAAA	-35	NA	70267829	70274199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70268342_70268700_70268779_70268858_70269014_70269386_70269576_70269652_70269791_70269882_70270080_70270372_70270761_70273083_70273151_70273246
ENSMUSG00000036249.17_0	chr2	-	2075	5	NNC	ENSMUSG00000036249.17	novel	2057	5	NA	NA	20	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	13.0455931256497	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATTAAACTGTGAGCT	NA	False	NA	NA	False	NA	NA	NA	51825155	51814470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822536_51824950
ENSMUSG00000036249.17_1	chr2	-	2025	5	FSM	ENSMUSG00000036249.17	ENSMUST00000102767.8	2057	5	21	11	21	-8	multi-exon	FALSE	canonical	3	26	junction_1	2.77263412660235	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATTAAACTGTGAGCT	NA	False	NA	NA	False	NA	NA	NA	51824998	51814470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822536_51824843
ENSMUSG00000036249.17_5	chr2	-	2030	5	NIC	ENSMUSG00000036249.17	novel	2057	5	NA	NA	14	-6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	12.619429464124	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAAACTGTGAGCTGC	NA	False	NA	NA	False	NA	NA	NA	51825005	51814468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822532_51824843
ENSMUSG00000036249.17_6	chr2	-	1904	4	NIC	ENSMUSG00000036249.17	novel	2057	5	NA	NA	20	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	13.8884444373331	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAAACTGTGAGCTGC	NA	False	NA	NA	False	NA	NA	NA	51824999	51814468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_51815947_51816692_51816773_51819671_51819862_51824843
ENSMUSG00000036256.14_2	chr5	-	1099	5	FSM	ENSMUSG00000036256.14	ENSMUST00000046746.10	1116	5	8	9	7	-1	multi-exon	TRUE	canonical	1	3	junction_4	2.29128784747792	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGTAAATTTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-12	NA	77555880	77497095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_77497347_77499074_77499202_77499759_77499877_77503408_77503519_77555386
ENSMUSG00000036257.16_25	chr12	+	2935	9	ISM	ENSMUSG00000036257.16	ENSMUST00000043082.16	13507	10	13804	10044	379	-5	3prime_fragment	FALSE	canonical	3	204	junction_2	25.7427174167763	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTTAATCAAGGTGTAT	534	False	NA	NA	False	NA	NA	NA	44329734	44359271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_44330488_44330575_44330726_44334953_44335106_44337348_44337444_44342680_44342853_44346016_44346075_44351693_44351889_44354701_44354898_44358107
ENSMUSG00000036257.16_3	chr12	+	3269	10	NIC	ENSMUSG00000036257.16	novel	13507	10	NA	NA	8	-55	combination_of_known_junctions	FALSE	canonical	2	6	junction_9	85.0700510182456	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTGTTCAAGGCTAATG	NA	False	NA	8	True	AATAAA	-13	NA	44315957	44359071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_44316085_44329360_44330488_44330575_44330726_44334953_44335106_44337348_44337444_44342680_44342853_44346016_44346075_44351693_44351889_44354701_44354931_44358107
ENSMUSG00000036257.16_4	chr12	+	3234	10	FSM	ENSMUSG00000036257.16	ENSMUST00000043082.16	13507	10	28	10245	9	-56	multi-exon	FALSE	canonical	3	204	junction_3	27.4419701988589	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAATTGTTCAAGGCTAAT	NA	False	NA	7	True	AATAAA	-12	NA	44315958	44359070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_44316085_44329360_44330488_44330575_44330726_44334953_44335106_44337348_44337444_44342680_44342853_44346016_44346075_44351693_44351889_44354701_44354898_44358107
ENSMUSG00000036270.17_0	chr8	+	4723	29	FSM	ENSMUSG00000036270.17	ENSMUST00000040254.16	4780	29	29	28	29	-11	multi-exon	FALSE	canonical	3	268	junction_16	54.5128121057194	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAGAAAGTATGTGTG	3285	False	NA	3	True	ATTAAA	-10	NA	106607541	106619829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ENSMUSG00000036270.17_19	chr8	+	4726	29	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	29	-11	intron_retention	FALSE	canonical	3	40	junction_14	87.3799176012429	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAGAAAGTATGTGTG	3285	False	NA	3	True	ATTAAA	-10	NA	106607541	106619829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614749_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ENSMUSG00000036270.17_22	chr8	+	4719	29	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	-31	-11	intron_retention	FALSE	canonical	3	40	junction_14	98.4644605936578	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAGAAAGTATGTGTG	3295	False	NA	3	True	ATTAAA	-10	NA	106607551	106619829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614749_106614941_106615019_106615151_106615227_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ENSMUSG00000036270.17_3	chr8	+	4678	29	NIC	ENSMUSG00000036270.17	novel	4645	29	NA	NA	29	-11	intron_retention	FALSE	canonical	3	70	junction_18	95.2952112958378	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAGAAAGTATGTGTG	3285	False	NA	3	True	ATTAAA	-10	NA	106607541	106619829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615227_106615388_106615735_106616173_106616304_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ENSMUSG00000036270.17_4	chr8	+	4675	29	FSM	ENSMUSG00000036270.17	ENSMUST00000119261.8	4645	29	-41	11	29	-11	multi-exon	FALSE	canonical	3	70	junction_18	83.7903344847198	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAGAAAGTATGTGTG	3285	False	NA	3	True	ATTAAA	-10	NA	106607541	106619829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616304_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ENSMUSG00000036270.17_5	chr8	+	4727	29	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	28	-11	intron_retention	TRUE	canonical	3	128	junction_16	71.6479755328731	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAGAAAGTATGTGTG	3284	False	NA	3	True	ATTAAA	-10	NA	106607540	106619829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615227_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
ENSMUSG00000036275.14_0	chr11	+	2441	3	FSM	ENSMUSG00000036275.14	ENSMUST00000036952.5	2467	3	26	0	26	0	multi-exon	FALSE	canonical	3	140	junction_1	2	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATCTGCTTCTGTTAGT	4584	False	NA	NA	False	AATAAA	-11	NA	52287280	52299550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_52287431_52293872_52294385_52297771
ENSMUSG00000036275.14_2	chr11	+	2021	2	ISM	ENSMUSG00000036275.14	ENSMUST00000036952.5	2467	3	6882	6	6664	-6	3prime_fragment	FALSE	canonical	3	144	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGTATAAATCTGCTTCT	NA	False	NA	NA	False	AATAAA	-5	NA	52294136	52299544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_52294385_52297771
ENSMUSG00000036275.14_3	chr11	+	1094	1	ISM	ENSMUSG00000036275.14	ENSMUST00000036952.5	2467	3	11202	0	10984	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATCTGCTTCTGTTAGT	NA	False	NA	NA	False	AATAAA	-11	NA	52298456	52299550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_52298500_52299600
ENSMUSG00000036278.8_0	chr19	+	1247	11	FSM	ENSMUSG00000036278.8	ENSMUST00000040261.7	1228	11	-18	-1	-18	1	multi-exon	FALSE	canonical	3	30	junction_9	10.4383906805599	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCACTGTCTGGGTCTGGCT	8514	False	NA	7	True	AATAAA	-17	NA	7034159	7175423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175066_7175102_7175277
ENSMUSG00000036278.8_3	chr19	+	1424	10	ISM	ENSMUSG00000036278.8	ENSMUST00000040261.7	1228	11	-18	-2	-18	2	intron_retention	FALSE	canonical	3	30	junction_9	9.49983755546625	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTCTGGGTCTGGCTG	8514	False	NA	8	True	AATAAA	-18	NA	7034159	7175424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175066
ENSMUSG00000036278.8_4	chr19	+	1514	9	ISM	ENSMUSG00000036278.8	ENSMUST00000040261.7	1228	11	-18	-4	-18	4	intron_retention	FALSE	canonical	3	47	junction_6	6.01560470775798	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTCTGGGTCTGGCTGGG	8514	False	NA	10	True	AATAAA	-20	NA	7034159	7175426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896
ENSMUSG00000036278.8_7	chr19	+	1215	10	NIC	ENSMUSG00000036278.8	novel	1228	11	NA	NA	-18	4	combination_of_known_splicesites	FALSE	canonical	3	10	junction_9	15.0185071014251	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTCTGGGTCTGGCTGGG	8514	False	NA	10	True	AATAAA	-20	NA	7034159	7175426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175277
ENSMUSG00000036281.14_10	chr2	-	1771	3	ISM	ENSMUSG00000036281.14	ENSMUST00000149850.8	4459	24	14616	2	-992	-2	3prime_fragment	FALSE	canonical	3	55	junction_2	16	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTTAAAAAGCAATGTATAG	NA	False	NA	-16	True	AATAAA	-18	NA	26256028	26252789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26253033_26253649_26253781_26254631
ENSMUSG00000036281.14_2	chr2	-	4337	23	FSM	ENSMUSG00000036281.14	ENSMUST00000035427.11	4363	23	26	0	-1	0	multi-exon	FALSE	canonical	3	40	junction_10	11.6217948571845	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAATGTATAGCCTT	NA	False	NA	-12	True	AATAAA	-22	NA	26270639	26252785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26253033_26253649_26253781_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
ENSMUSG00000036281.14_33	chr2	-	4334	23	NNC	ENSMUSG00000036281.14	novel	4363	23	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_22	13.922824473587	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAATGTATAGCCTT	NA	False	NA	-12	True	AATAAA	-22	NA	26270640	26252785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_26253033_26253649_26253781_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268645_26270560
ENSMUSG00000036281.14_4	chr2	-	4362	23	NIC	ENSMUSG00000036281.14	novel	4363	23	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	13.1962303658192	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAATGTATAGCCTT	NA	False	NA	-12	True	AATAAA	-22	NA	26270640	26252785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26253033_26253649_26253805_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
ENSMUSG00000036282.16_0	chr14	+	4427	5	FSM	ENSMUSG00000036282.16	ENSMUST00000153488.9	4446	5	0	19	0	-19	multi-exon	FALSE	canonical	3	239	junction_1	37.2458051329274	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGCATTTTTCTTTAAG	NA	False	NA	18	True	AATAAA	-15	NA	49409682	49428323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_49409835_49410072_49410851_49415508_49415633_49418162_49418219_49425006
ENSMUSG00000036282.16_19	chr14	+	2340	1	ISM	ENSMUSG00000036282.16	ENSMUST00000153488.9	4446	5	16302	18	10005	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCATTTTTCTTTAAGA	NA	False	NA	19	True	AATAAA	-16	NA	49425984	49428324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_49426000_49428300
ENSMUSG00000036282.16_2	chr14	+	4291	4	ISM	ENSMUSG00000036282.16	ENSMUST00000153488.9	4446	5	374	19	2	-19	3prime_fragment	FALSE	canonical	3	313	junction_3	7.58653778449403	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGCATTTTTCTTTAAG	NA	False	NA	18	True	AATAAA	-15	NA	49410056	49428323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_49410851_49415508_49415633_49418162_49418219_49425006
ENSMUSG00000036285.11_1	chr5	-	2596	7	FSM	ENSMUSG00000036285.11	ENSMUST00000047860.9	2288	7	-314	6	-314	-6	multi-exon	FALSE	canonical	3	116	junction_4	16.2138486760204	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTAGTGTCCATGTAT	NA	False	NA	63	True	AATAAA	-8	NA	77458245	77442034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_77442404_77444932_77445051_77447504_77447622_77452032_77452165_77454120_77454324_77455399_77455565_77456753
ENSMUSG00000036285.11_11	chr5	-	172	1	ISM	ENSMUSG00000036285.11	ENSMUST00000150451.2	577	2	765	0	765	0	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	77451397	77451225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_77451200_77451400
ENSMUSG00000036285.11_12	chr5	-	2437	5	NIC	ENSMUSG00000036285.11	novel	2815	3	NA	NA	-312	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	64.2222702806433	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	77458243	77451225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_77451673_77452032_77452165_77454120_77454324_77455399_77455565_77456753
ENSMUSG00000036285.11_13	chr5	-	3832	3	FSM	ENSMUSG00000036285.11	ENSMUST00000150722.2	2815	3	-350	-667	-325	667	multi-exon	FALSE	canonical	3	159	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCTTCTAACAGAAAAAG	NA	False	NA	NA	False	AATAAA	-25	NA	77458256	77452159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_77454324_77455399_77455565_77456753
ENSMUSG00000036285.11_2	chr5	-	2481	6	NIC	ENSMUSG00000036285.11	novel	2288	7	NA	NA	-325	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_3	53.9013914477168	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTCCATGTATCTGTGA	NA	False	NA	69	True	AATAAA	-14	NA	77458256	77442028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_77442404_77444932_77445051_77447504_77447622_77454120_77454324_77455399_77455565_77456753
ENSMUSG00000036291.7_0	chr14	+	3090	8	FSM	ENSMUSG00000036291.7	ENSMUST00000037473.6	6321	8	42	3189	-5	271	multi-exon	FALSE	canonical	3	109	junction_2	12.7487494384703	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTGTCTTTTTTTTC	NA	False	NA	33	True	ATTAAA	-18	NA	49303993	49325147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
ENSMUSG00000036291.7_1	chr14	+	2377	9	NIC	ENSMUSG00000036291.7	novel	2544	9	NA	NA	-5	8	intron_retention	TRUE	canonical	3	13	junction_8	38.1042976578758	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTATGCTTTTTCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	49303982	49328263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701_49323817_49327656
ENSMUSG00000036291.7_17	chr14	+	1843	1	ISM	ENSMUSG00000036291.7	ENSMUST00000037473.6	6321	8	22464	78	5102	3	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGATTTCTTATGCTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	49326415	49328258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_49326400_49328300
ENSMUSG00000036291.7_2	chr14	+	2217	2	FSM	ENSMUSG00000036291.7	ENSMUST00000228238.2	3514	2	41	1256	-5	-1256	multi-exon	FALSE	canonical	3	152	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTCATGATGTTTTCA	NA	False	NA	NA	False	AATAAA	-7	NA	49303993	49312894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_49304322_49311005
ENSMUSG00000036291.7_4	chr14	+	2856	9	FSM	ENSMUSG00000036291.7	ENSMUST00000227410.2	2544	9	12	-324	1	270	multi-exon	FALSE	canonical	3	29	junction_2	33.1200467994838	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTCTTTTTTTT	NA	False	NA	32	True	ATTAAA	-17	NA	49303999	49325146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_49304322_49311005_49311200_49311426_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
ENSMUSG00000036291.7_8	chr14	+	2868	7	NIC	ENSMUSG00000036291.7	novel	6321	8	NA	NA	-3	268	intron_retention	FALSE	canonical	3	8	junction_2	45.2683357571517	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTTTTTGTCTTTTTT	NA	False	NA	30	True	ATTAAA	-15	NA	49303984	49325144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_49304322_49311005_49311652_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
ENSMUSG00000036292.15_1	chr16	-	3523	16	ISM	ENSMUSG00000036292.15	ENSMUST00000214098.2	2046	18	23178	-1689	-12222	-4	3prime_fragment	FALSE	canonical	1	1	junction_13	2.10396451174127	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGTTGTCGTTTTTTCTT	1450	False	NA	NA	False	AATAAA	-12	NA	43860530	43800721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_43802502_43803503_43803610_43803870_43803982_43807284_43807343_43808443_43808621_43810130_43810235_43810985_43811129_43812421_43812541_43818088_43818227_43825822_43825986_43829767_43829901_43833284_43833401_43849041_43849123_43850656_43850753_43851342_43851447_43860436
ENSMUSG00000036292.15_2	chr16	-	1018	1	ISM	ENSMUSG00000036292.15	ENSMUST00000179565.8	3159	12	31665	7	31665	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGTCGTTTTTTCTTCT	NA	False	NA	NA	False	AATAAA	-14	NA	43801737	43800719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_43800700_43801700
ENSMUSG00000036292.15_6	chr16	-	3712	18	FSM	ENSMUSG00000036292.15	ENSMUST00000214098.2	2046	18	24	-1690	4	-3	multi-exon	FALSE	canonical	0	0	junction_16	2.1994022465694	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTTGTCGTTTTTTCTTC	5993	False	NA	NA	False	AATAAA	-13	NA	43883684	43800720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_43802502_43803503_43803610_43803870_43803982_43807284_43807343_43808443_43808621_43810130_43810235_43810985_43811129_43812421_43812541_43818088_43818227_43825822_43825986_43829767_43829901_43833284_43833401_43849041_43849123_43850656_43850753_43851342_43851447_43860436_43860522_43879464_43879612_43883634
ENSMUSG00000036299.6_0	chr18	+	861	3	FSM	ENSMUSG00000036299.6	ENSMUST00000236421.2	524	3	3	-340	3	0	multi-exon	FALSE	canonical	3	91	junction_1	354	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCCTGCTTTTTGTCTTT	NA	False	NA	26	True	ATTAAA	-17	NA	75138942	75143004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_75138972_75141721_75141898_75142348
ENSMUSG00000036299.6_1	chr18	+	1058	3	FSM	ENSMUSG00000036299.6	ENSMUST00000237263.2	1266	3	-11	219	-11	0	multi-exon	FALSE	canonical	3	388	junction_1	205.5	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCCTGCTTTTTGTCTTT	NA	False	NA	26	True	ATTAAA	-17	NA	75138959	75143004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_75139186_75141721_75141898_75142348
ENSMUSG00000036299.6_2	chr18	+	957	3	FSM	ENSMUSG00000036299.6	ENSMUST00000040284.6	979	3	22	0	-10	0	multi-exon	FALSE	canonical	3	169	junction_1	315	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCCTGCTTTTTGTCTTT	NA	False	NA	26	True	ATTAAA	-17	NA	75138960	75143004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_75139086_75141721_75141898_75142348
ENSMUSG00000036299.6_3	chr18	+	2646	2	FSM	ENSMUSG00000036299.6	ENSMUST00000235420.2	838	2	-1370	-438	936	-1	multi-exon	FALSE	canonical	3	799	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTCCTGCTTTTTGTCTT	NA	False	NA	25	True	ATTAAA	-16	NA	75139906	75143003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_75141898_75142348
ENSMUSG00000036304.15_0	chr16	-	5575	5	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	11	-4	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	19.6897816138219	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGTCTGTGGTTGTTG	NA	False	NA	-5	True	AATAAA	-16	NA	43800143	43785399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_43789777_43791761_43791930_43793830_43794530_43799270_43799441_43799982
ENSMUSG00000036304.15_1	chr16	-	5369	6	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	24	-7	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	10.4995237987254	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACTGTCTGTGGTTG	NA	False	NA	-8	True	AATAAA	-13	NA	43800130	43785402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_43789777_43791761_43791930_43793830_43794141_43794429_43794530_43799270_43799540_43799982
ENSMUSG00000036304.15_14	chr16	-	5561	6	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	-7	-7	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_5	10.9544511501033	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACTGTCTGTGGTTG	NA	False	NA	-8	True	AATAAA	-13	NA	43800161	43785402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_43789777_43791761_43791930_43793830_43794141_43794429_43794530_43799270_43799540_43799821
ENSMUSG00000036304.15_15	chr16	-	4913	3	ISM	ENSMUSG00000036304.15	ENSMUST00000231700.2	5751	5	5954	6	5213	-6	3prime_fragment	FALSE	canonical	3	34	junction_2	10.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAACTGTCTGTGGTTGT	NA	False	NA	-7	True	AATAAA	-14	NA	43794200	43785401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_43789777_43791761_43791930_43793830
ENSMUSG00000036304.15_21	chr16	-	6101	4	FSM	ENSMUSG00000036304.15	ENSMUST00000165648.2	1278	4	-717	-4106	24	-7	multi-exon	FALSE	canonical	3	34	junction_2	9.10433352249844	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACTGTCTGTGGTTG	NA	False	NA	-8	True	AATAAA	-13	NA	43800130	43785402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_43789777_43791761_43791930_43793830_43794530_43799270
ENSMUSG00000036304.15_26	chr16	-	2068	3	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	25	-5109	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	1	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTTCTGCTGCTGTTTG	NA	False	NA	NA	False	AATAAA	-21	NA	43800129	43794617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_43796109_43799270_43799540_43799821
ENSMUSG00000036304.15_4	chr16	-	5658	5	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	24	-7	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_4	10.9857862713599	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACTGTCTGTGGTTG	NA	False	NA	-8	True	AATAAA	-13	NA	43800130	43785402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_43789777_43791761_43791930_43793830_43794530_43799270_43799540_43799982
ENSMUSG00000036304.15_6	chr16	-	5826	5	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	17	-7	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	11.6054943884352	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACTGTCTGTGGTTG	NA	False	NA	-8	True	AATAAA	-13	NA	43800137	43785402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_43789777_43791761_43791930_43793830_43794530_43799270_43799540_43799821
ENSMUSG00000036304.15_7	chr16	-	3350	1	ISM	ENSMUSG00000036304.15	ENSMUST00000231700.2	5751	5	11405	4	10664	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGTCTGTGGTTGTTG	NA	False	NA	-5	True	AATAAA	-16	NA	43788749	43785399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_43785400_43788700
ENSMUSG00000036306.14_0	chr8	-	2241	1	ISM	ENSMUSG00000036306.14	ENSMUST00000185176.8	5019	4	49314	2	6042	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCACGGTCACTTTTGTC	NA	False	NA	-11	True	AATAAA	-18	NA	69587563	69585322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_69585300_69587600
ENSMUSG00000036306.14_2	chr8	-	193	1	Genic_Genomic	ENSMUSG00000036306.14	novel	NA	NA	NA	NA	16310	17	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAATGGATATAGCTGACT	6959	False	NA	NA	False	NA	NA	NA	69618572	69618379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_69618400_69618600
ENSMUSG00000036309.15_3	chr11	+	1226	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	29	185	1	-185	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	2424	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGTATGTCATCTTTTT	440	False	NA	13	True	ATTAAA	-16	NA	52122864	52137500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ENSMUSG00000036315.14_0	chr17	-	650	5	FSM	ENSMUSG00000036315.14	ENSMUST00000172518.8	710	5	60	0	9	0	multi-exon	FALSE	canonical	3	583	junction_4	61.4532342517463	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGATGTTATGTGTG	NA	False	NA	-13	True	ACTAAA	-15	NA	37269365	37265249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269189_37269269
ENSMUSG00000036315.14_5	chr17	-	722	4	FSM	ENSMUSG00000036315.14	ENSMUST00000113669.9	742	4	18	2	18	0	multi-exon	FALSE	canonical	3	586	junction_1	61.9157133170212	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGATGTTATGTGTG	NA	False	NA	-13	True	ACTAAA	-15	NA	37269356	37265249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040
ENSMUSG00000036323.15_0	chr5	+	3563	19	FSM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	31	31	-7	-31	multi-exon	FALSE	canonical	3	245	junction_6	28.4995126663987	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAACTAGCAGTGAAT	NA	False	NA	-3	True	AATAAA	-5	NA	77122560	77147753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
ENSMUSG00000036323.15_26	chr5	+	1387	1	ISM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	23858	10	1136	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTAACAATGTTTCGGTA	NA	False	NA	18	True	AATAAA	-26	NA	77146387	77147774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_77146400_77147800
ENSMUSG00000036327.19_0	chr2	-	3882	12	NIC	ENSMUSG00000036327.19	novel	2559	13	NA	NA	150	-7	intron_retention	FALSE	canonical	3	117	junction_2	7.1269480445526	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAAAGTTGTTTCAGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	26127387	26099143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26101472_26103992_26104182_26107644_26107796_26108620_26108744_26110641_26110772_26110920_26111056_26112232_26112379_26114852_26114944_26115160_26115267_26116249_26116299_26118358_26118460_26127054
ENSMUSG00000036327.19_12	chr2	-	3381	9	FSM	ENSMUSG00000036327.19	ENSMUST00000091263.12	4011	9	136	494	136	-6	multi-exon	FALSE	canonical	3	117	junction_2	7.20134536041704	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGTTGTTTCAGTTTT	7556	False	NA	NA	False	AATAAA	-15	NA	26115247	26099142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26101472_26103992_26104182_26107644_26107796_26108620_26108744_26110641_26110772_26110920_26111056_26112232_26112379_26114852_26114944_26115160
ENSMUSG00000036327.19_2	chr2	-	2403	13	FSM	ENSMUSG00000036327.19	ENSMUST00000036187.9	2559	13	150	6	150	-6	multi-exon	FALSE	canonical	3	18	junction_1	31.8210054663408	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGTTGTTTCAGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	26127387	26099142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26099806_26101285_26101472_26103992_26104182_26107644_26107796_26108620_26108744_26110641_26110772_26110920_26111056_26112232_26112379_26114852_26114944_26115160_26115267_26116249_26116299_26118358_26118460_26127054
ENSMUSG00000036327.19_8	chr2	-	1707	1	ISM	ENSMUSG00000036327.19	ENSMUST00000091263.12	4011	9	14534	494	14534	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGTTGTTTCAGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	26100849	26099142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26099100_26100800
ENSMUSG00000036333.12_0	chr12	+	7058	29	NNC	ENSMUSG00000036333.12	novel	6277	30	NA	NA	1	-226	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	9.91340053685321	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGACTCACGGAGTTTT	NA	False	NA	3	True	AATAAA	-13	NA	25024928	25109470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_25025062_25032235_25032377_25036902_25037002_25038530_25038630_25039736_25039836_25040671_25040774_25042208_25042308_25044810_25045009_25047230_25047330_25048704_25048804_25049259_25049359_25051571_25051750_25052987_25053153_25053942_25054123_25055051_25055218_25058057_25058210_25058401_25058692_25060070_25060212_25060893_25061138_25061498_25061588_25063295_25063441_25066888_25067052_25086452_25086632_25088322_25088550_25090454_25090569_25101093_25101226_25102795_25102895_25103796_25104034_25106580
ENSMUSG00000036333.12_11	chr12	+	6938	28	NIC	ENSMUSG00000036333.12	novel	6277	30	NA	NA	4	-226	combination_of_known_junctions	FALSE	canonical	1	2	junction_24	11.3298227436232	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGACTCACGGAGTTTT	NA	False	NA	3	True	AATAAA	-13	NA	25024931	25109470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_25025062_25032235_25032377_25036902_25037002_25038530_25038630_25039736_25039836_25040674_25040774_25042208_25042308_25044810_25045009_25047230_25047330_25048704_25048804_25049259_25049359_25051571_25051750_25052987_25053153_25053942_25054123_25055051_25055218_25058057_25058210_25058401_25058692_25060070_25060212_25060893_25061138_25061498_25061588_25063295_25063441_25066888_25067052_25086452_25086632_25088322_25088550_25101093_25101226_25102795_25102895_25103796_25104034_25106580
ENSMUSG00000036333.12_3	chr12	+	7052	29	NIC	ENSMUSG00000036333.12	novel	6277	30	NA	NA	4	-226	combination_of_known_junctions	FALSE	canonical	3	25	junction_5	8.28017055922134	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGACTCACGGAGTTTT	NA	False	NA	3	True	AATAAA	-13	NA	25024931	25109470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_25025062_25032235_25032377_25036902_25037002_25038530_25038630_25039736_25039836_25040674_25040774_25042208_25042308_25044810_25045009_25047230_25047330_25048704_25048804_25049259_25049359_25051571_25051750_25052987_25053153_25053942_25054123_25055051_25055218_25058057_25058210_25058401_25058692_25060070_25060212_25060893_25061138_25061498_25061588_25063295_25063441_25066888_25067052_25086452_25086632_25088322_25088550_25090454_25090569_25101093_25101226_25102795_25102895_25103796_25104034_25106580
ENSMUSG00000036333.12_31	chr12	+	4678	3	ISM	ENSMUSG00000036333.12	ENSMUST00000066652.7	7409	32	76420	226	-1347	-226	3prime_fragment	FALSE	canonical	3	47	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGACTCACGGAGTTTT	1512	False	NA	3	True	AATAAA	-13	NA	25101343	25109470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_25102895_25103796_25104034_25106580
ENSMUSG00000036333.12_33	chr12	+	2960	2	ISM	ENSMUSG00000036333.12	ENSMUST00000222481.2	627	4	-32	3678	-32	-231	5prime_fragment	FALSE	canonical	3	47	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCATTCTGACTCACGGA	4127	False	NA	-2	True	AATAAA	-8	NA	25103958	25109465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_25104034_25106580
ENSMUSG00000036333.12_34	chr12	+	2364	1	ISM	ENSMUSG00000036333.12	ENSMUST00000066652.7	7409	32	82183	226	3116	-226	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGACTCACGGAGTTTT	7275	False	NA	3	True	AATAAA	-13	NA	25107106	25109470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_25107100_25109500
ENSMUSG00000036333.12_53	chr12	+	4027	8	NIC	ENSMUSG00000036333.12	novel	6277	30	NA	NA	-83	-227	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	6.9868681489357	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTGACTCACGGAGTTT	NA	False	NA	2	True	AATAAA	-12	NA	25066901	25109469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_25067052_25086452_25086632_25088322_25088550_25090454_25090569_25101093_25101226_25102795_25102895_25103796_25104034_25106580
ENSMUSG00000036339.19_0	chr14	+	2157	1	FSM	ENSMUSG00000036339.19	ENSMUST00000226400.2	2281	1	78	46	-7	-46	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAATACATCTCAAAACC	NA	False	NA	NA	False	AATATA	-15	NA	48683831	48685988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_48683800_48686000
ENSMUSG00000036339.19_11	chr14	+	1790	8	ISM	ENSMUSG00000036339.19	ENSMUST00000124720.8	3035	17	38837	0	5412	0	3prime_fragment	FALSE	canonical	3	23	junction_4	4.16496563917521	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTATGTTGTCCTTCTC	NA	False	NA	NA	False	ATTAAA	-31	NA	48722421	48750247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_48722511_48724197_48724368_48733748_48733921_48737463_48737613_48742701_48742879_48744599_48744654_48746491_48746583_48749359
ENSMUSG00000036339.19_12	chr14	+	3675	5	ISM	ENSMUSG00000036339.19	ENSMUST00000111735.10	5485	16	53679	296	-5925	-296	3prime_fragment	FALSE	canonical	3	23	junction_1	1.6393596310755	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGCTCATATTCTCAGT	NA	False	NA	NA	False	AATAGA	-14	NA	48737517	48752617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_48737613_48742701_48742879_48744599_48744654_48746491_48746583_48749359
ENSMUSG00000036339.19_14	chr14	+	2823	17	FSM	ENSMUSG00000036339.19	ENSMUST00000124720.8	3035	17	20	192	8	-192	multi-exon	FALSE	canonical	0	0	junction_3	14.4339822554276	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTAACTATAACTATTT	NA	False	NA	NA	False	AAAACA	-37	NA	48683604	48750055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_48683793_48688599_48688632_48689362_48689515_48692537_48692768_48709780_48709959_48711422_48711537_48714971_48715152_48717760_48717802_48720706_48720791_48722395_48722511_48724197_48724368_48733748_48733921_48737463_48737613_48742701_48742879_48744599_48744654_48746491_48746583_48749359
ENSMUSG00000036339.19_21	chr14	+	5284	15	ISM	ENSMUSG00000036339.19	ENSMUST00000111735.10	5485	16	4407	333	-2273	-333	3prime_fragment	FALSE	canonical	3	23	junction_11	6.79135104228841	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATGTGAAAGCTTACAA	NA	False	NA	NA	False	AATAAA	-24	NA	48688245	48752580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_48688632_48689362_48689515_48709780_48709959_48711422_48711537_48714971_48715152_48717760_48717802_48720706_48720791_48722395_48722511_48724197_48724368_48733748_48733921_48737463_48737613_48742701_48742879_48744599_48744654_48746491_48746583_48749359
ENSMUSG00000036339.19_3	chr14	+	5134	16	FSM	ENSMUSG00000036339.19	ENSMUST00000111735.10	5485	16	3	348	3	-348	multi-exon	FALSE	canonical	3	23	junction_12	6.92306932573182	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTATAATGTATTCAAAAA	NA	False	NA	NA	False	AATAAA	-9	NA	48683841	48752565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_48684061_48688599_48688632_48689362_48689515_48709780_48709959_48711422_48711537_48714971_48715152_48717760_48717802_48720706_48720791_48722395_48722511_48724197_48724368_48733748_48733921_48737463_48737613_48742701_48742879_48744599_48744654_48746491_48746583_48749359
ENSMUSG00000036339.19_5	chr14	+	1968	11	ISM	ENSMUSG00000036339.19	ENSMUST00000133744.8	2996	12	43	4528	2	608	5prime_fragment	FALSE	canonical	3	30	junction_9	4.62709412050371	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACGTGTGCAAATAAAC	NA	False	NA	NA	False	AATAAA	-18	NA	48683851	48734441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_48684061_48688599_48688632_48689362_48689515_48709780_48709959_48711422_48711537_48714971_48715152_48717760_48717802_48720706_48720791_48722395_48722511_48724197_48724368_48733748
ENSMUSG00000036339.19_6	chr14	+	1534	10	ISM	ENSMUSG00000036339.19	ENSMUST00000133744.8	2996	12	20	14366	-10	4350	5prime_fragment	TRUE	canonical	3	30	junction_9	4.84067131350933	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTGAAAGATTTGGGG	NA	False	NA	NA	False	ATTAAA	-14	NA	48683828	48724603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_48684061_48688599_48688632_48689362_48689515_48709780_48709959_48711422_48711537_48714971_48715152_48717760_48717802_48720706_48720791_48722395_48722511_48724197
ENSMUSG00000036352.17_0	chr2	-	1839	10	FSM	ENSMUSG00000036352.17	ENSMUST00000036509.14	1852	10	8	5	8	-5	multi-exon	FALSE	canonical	3	686	junction_2	68.2632884002073	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTACTTGTGTTACTTC	NA	False	NA	-8	True	AATAAA	-15	NA	25911751	25888559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25889080_25895337_25895477_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408
ENSMUSG00000036352.17_15	chr2	-	456	1	ISM	ENSMUSG00000036352.17	ENSMUST00000123275.8	814	3	8917	5	8917	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTACTTGTGTTACTTC	NA	False	NA	-8	True	AATAAA	-15	NA	25889015	25888559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25888600_25889000
ENSMUSG00000036352.17_4	chr2	-	1700	9	NIC	ENSMUSG00000036352.17	novel	1852	10	NA	NA	8	-5	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	240.477617201685	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTACTTGTGTTACTTC	NA	False	NA	-8	True	AATAAA	-15	NA	25911751	25888559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25889080_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408
ENSMUSG00000036368.9_0	chr17	+	2677	11	FSM	ENSMUSG00000036368.9	ENSMUST00000225357.2	2118	11	-13	-546	-13	546	multi-exon	FALSE	canonical	1	2	junction_3	2.75862284482674	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAATAATGAGTTTTATT	3567	False	NA	NA	False	AATAAA	-1	NA	79922477	79990224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_79922798_79928734_79929202_79957730_79957906_79959127_79959231_79966841_79966903_79974299_79974376_79975379_79975458_79977985_79978085_79979778_79979833_79979921_79980003_79989061
ENSMUSG00000036371.7_2	chr6	+	1642	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	25	0	-2	0	multi-exon	FALSE	canonical	3	2187	junction_4	1760.87005396161	931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTAAAGCTTTCACTTCA	5869	False	NA	32	True	AATATA	-20	NA	67243991	67261290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_3	chr6	+	1614	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	-3	6	-2	-1	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	2039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTAAAGCTTTCACTTC	5869	False	NA	31	True	AATATA	-19	NA	67243991	67261289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_4	chr6	+	1658	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	384	13432	-2	-2	multi-exon	FALSE	canonical	3	2187	junction_4	1676.62542517001	1219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTTTAAAGCTTTCACTT	5869	False	NA	30	True	AATATA	-18	NA	67243991	67261288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_5	chr6	+	1597	8	FSM	ENSMUSG00000036371.7	ENSMUST00000204293.3	1336	8	-2	-259	-2	0	multi-exon	FALSE	canonical	3	2743	junction_3	1435.93298973887	1550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTAAAGCTTTCACTTCA	5869	False	NA	32	True	AATATA	-20	NA	67243991	67261290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036372.15_0	chr19	+	385	4	FSM	ENSMUSG00000036372.15	ENSMUST00000040372.14	606	4	214	7	10	-1	multi-exon	FALSE	canonical	3	2797	junction_1	495.826806679734	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGCCTCATGTCCATT	4191	False	NA	26	True	AATAAA	-15	NA	10181591	10185181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10181629_10183787_10183898_10184527_10184665_10185080
ENSMUSG00000036372.15_11	chr19	+	349	3	ISM	ENSMUSG00000036372.15	ENSMUST00000166412.2	447	4	390	7	390	-1	3prime_fragment	FALSE	canonical	3	3159	junction_2	411.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGCCTCATGTCCATT	252	False	NA	26	True	AATAAA	-15	NA	10183786	10185181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_10183898_10184527_10184665_10185080
ENSMUSG00000036376.4_0	chr13	-	1275	3	FSM	ENSMUSG00000036376.4	ENSMUST00000041782.4	4456	3	-2	3183	-2	-3183	multi-exon	FALSE	canonical	3	221	junction_1	5.5	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCTTTTTAGTTTTTCA	NA	False	NA	-22	True	AATAAA	-16	NA	23608038	23605713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23606506_23606652_23606853_23607755
ENSMUSG00000036377.20_1	chr5	+	6993	10	NIC	ENSMUSG00000036377.20	novel	583	4	NA	NA	0	97	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	3.2659863237109	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAAATCCTTAGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	76805531	77021274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_76805701_76907432_76907579_76970312_76970485_76996663_76996829_76999182_76999252_77002781_77002965_77004177_77007002_77013846_77014038_77015018_77015182_77018363
ENSMUSG00000036377.20_2	chr5	+	7120	11	NIC	ENSMUSG00000036377.20	novel	583	4	NA	NA	-1	85	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3.28785644455472	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTAGATACTTAATAAAAA	NA	False	NA	NA	False	AATAAA	-4	NA	76805528	77021262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_76805701_76907432_76907579_76970312_76970485_76988634_76988771_76996663_76996829_76999182_76999252_77002781_77002965_77004177_77007002_77013846_77014038_77015018_77015182_77018363
ENSMUSG00000036377.20_23	chr5	+	2490	4	ISM	ENSMUSG00000036377.20	ENSMUST00000120639.9	6826	9	16588	2852	-1655	19	3prime_fragment	FALSE	canonical	0	0	junction_1	4.32049379893857	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCCCTCGGCCGGTTGTCG	3280	False	NA	NA	False	AGTAAA	-16	NA	77005033	77018540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_77006993_77013846_77014038_77015018_77015182_77018363
ENSMUSG00000036377.20_8	chr5	+	5266	4	ISM	ENSMUSG00000036377.20	ENSMUST00000121160.8	6921	11	104689	0	-1785	0	3prime_fragment	FALSE	canonical	1	2	junction_3	3.39934634239519	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTTGTGATATTTAGTT	3150	False	NA	NA	False	AATATA	-19	NA	77004903	77021177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_77007002_77013846_77014038_77015018_77015182_77018363
ENSMUSG00000036390.9_0	chr6	-	1212	4	FSM	ENSMUSG00000036390.9	ENSMUST00000043098.9	1223	4	2	9	2	-9	multi-exon	FALSE	canonical	3	118	junction_1	3.77123616632825	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATTGTGTCATTTCTCA	NA	False	NA	-16	True	AATAAA	-10	NA	67014388	67012088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_67012757_67013661_67013900_67013993_67014096_67014184
ENSMUSG00000036390.9_1	chr6	-	2281	1	NIC	ENSMUSG00000036390.9	novel	1223	4	NA	NA	-5	-6	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTGTCATTTCTCAACG	NA	False	NA	-13	True	AATAAA	-13	NA	67014366	67012085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_67012100_67014400
ENSMUSG00000036390.9_2	chr6	-	1314	3	NIC	ENSMUSG00000036390.9	novel	1223	4	NA	NA	2	-1	intron_retention	FALSE	canonical	3	118	junction_1	4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATTTCTCAACGTGTGG	NA	False	NA	-8	True	AATAAA	-18	NA	67014388	67012080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_67012757_67013661_67014096_67014184
ENSMUSG00000036390.9_3	chr6	-	857	2	FSM	ENSMUSG00000036390.9	ENSMUST00000128617.2	703	2	326	-480	326	-3	multi-exon	FALSE	canonical	3	118	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCATTTCTCAACGTGT	NA	False	NA	-10	True	AATAAA	-16	NA	67013844	67012082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_67012757_67013661
ENSMUSG00000036391.17_0	chr11	-	6388	23	FSM	ENSMUSG00000036391.17	ENSMUST00000109097.9	6581	23	183	10	3	-10	multi-exon	FALSE	canonical	3	47	junction_21	10.4921261307612	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGCTTATGAAAATGT	3776	False	NA	-29	True	AATAAA	-8	NA	51647262	51583100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51586069_51587475_51587580_51591640_51591734_51591984_51592090_51595102_51595241_51597954_51598131_51599761_51599873_51603015_51603190_51604357_51604517_51605951_51606073_51607265_51607473_51608550_51608607_51612641_51612761_51614410_51614524_51617311_51617422_51620278_51620406_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
ENSMUSG00000036391.17_14	chr11	-	2033	1	ISM	ENSMUSG00000036391.17	ENSMUST00000109097.9	6581	23	62312	10	61905	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGCTTATGAAAATGT	NA	False	NA	-29	True	AATAAA	-8	NA	51585133	51583100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_51583100_51585100
ENSMUSG00000036391.17_3	chr11	-	6403	23	FSM	ENSMUSG00000036391.17	ENSMUST00000038210.12	3800	23	-242	-2361	-15	-10	multi-exon	FALSE	canonical	3	22	junction_16	14.7653827896746	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGCTTATGAAAATGT	3758	False	NA	-29	True	AATAAA	-8	NA	51647280	51583100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51586069_51587475_51587580_51591640_51591734_51591984_51592090_51595102_51595241_51597954_51598131_51599761_51599873_51603015_51603190_51604357_51604517_51605951_51606073_51607265_51607473_51608550_51608607_51612641_51612761_51614410_51614524_51617311_51617422_51620278_51620403_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
ENSMUSG00000036391.17_37	chr11	-	2115	11	FSM	ENSMUSG00000036391.17	ENSMUST00000064297.5	2104	11	-10	-1	-10	1	multi-exon	FALSE	canonical	3	47	junction_9	12.9015502944414	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTGTTTTTTTCAGA	3763	False	NA	NA	False	AATAAA	-15	NA	51647275	51612515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51612761_51614410_51614524_51617311_51617422_51620278_51620406_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
ENSMUSG00000036391.17_41	chr11	-	176	1	ISM	ENSMUSG00000036391.17	ENSMUST00000147255.2	2744	8	27911	7	26961	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTAAAAAAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	51620077	51619901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_51619900_51620100
ENSMUSG00000036391.17_43	chr11	-	1988	8	FSM	ENSMUSG00000036391.17	ENSMUST00000147255.2	2744	8	749	7	19	-7	multi-exon	FALSE	canonical	3	47	junction_6	14.2270222908839	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTAAAAAAAAAAGCC	3799	False	NA	NA	False	NA	NA	NA	51647239	51619901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_51620406_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
ENSMUSG00000036395.16_0	chr9	-	4276	17	NIC	ENSMUSG00000036395.16	novel	3688	19	NA	NA	4	0	intron_retention	FALSE	canonical	3	11	junction_11	5.37899560791789	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGTTTTTGTGTCTGGGG	NA	False	NA	NA	False	AATAAA	-15	NA	26717713	26674340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_26676988_26677280_26677369_26678372_26678452_26678690_26678763_26679015_26679157_26679714_26679822_26680331_26680413_26681035_26681174_26682323_26682409_26685268_26685340_26689314_26689397_26691969_26692063_26703077_26703187_26705378_26705475_26706081_26706151_26707701_26707900_26717593
ENSMUSG00000036395.16_1	chr9	-	3658	19	FSM	ENSMUSG00000036395.16	ENSMUST00000066560.13	3688	19	26	4	-10	-4	multi-exon	FALSE	canonical	3	9	junction_2	5.66884489725515	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTATCTGTTTTTGTGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	26717738	26674344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_26676120_26676397_26676515_26676875_26676988_26677280_26677369_26678372_26678452_26678690_26678763_26679015_26679157_26679714_26679822_26680331_26680413_26681035_26681174_26682323_26682409_26685268_26685340_26689314_26689397_26691969_26692063_26703077_26703187_26705378_26705475_26706081_26706151_26707701_26707900_26717593
ENSMUSG00000036395.16_5	chr9	-	2808	3	ISM	ENSMUSG00000036395.16	ENSMUST00000162252.8	2209	18	35431	-2153	1316	-5	3prime_fragment	FALSE	canonical	3	14	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTATCTGTTTTTGTGTC	NA	False	NA	NA	False	AATAAA	-10	NA	26678450	26674345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_26676988_26677280_26677369_26678372
ENSMUSG00000036395.16_7	chr9	-	1190	1	ISM	ENSMUSG00000036395.16	ENSMUST00000040398.14	3701	20	42192	7	4230	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTATCTGTTTTTGTGT	NA	False	NA	NA	False	AATAAA	-9	NA	26675536	26674346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_26674300_26675500
ENSMUSG00000036398.14_0	chr17	-	625	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	39	935	39	-1	multi-exon	FALSE	canonical	3	708	junction_2	5	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCATTGCCTCCGTTCTCC	NA	False	NA	-16	True	AATATA	-22	NA	37262566	37260182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_37260447_37260768_37260878_37262314
ENSMUSG00000036402.14_10	chr6	+	4167	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114226.8	1155	5	-6	-3006	-3	-55	multi-exon	FALSE	canonical	2	34	junction_3	135.972423674803	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCGTCATTGACTCCT	NA	False	NA	2	True	ATTAAA	-17	NA	66873411	66998279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_66873512_66891436_66891495_66920808_66920867_66992708_66992828_66994447
ENSMUSG00000036402.14_2	chr6	+	4145	5	FSM	ENSMUSG00000036402.14	ENSMUST00000043148.13	4248	5	43	60	0	-60	multi-exon	FALSE	canonical	2	79	junction_3	124.109578598914	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGTCAGTGCGTCATTGA	NA	False	NA	-3	True	ATTAAA	-12	NA	66873423	66998274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_66873512_66891436_66891495_66920808_66920862_66992708_66992828_66994447
ENSMUSG00000036402.14_23	chr6	+	2768	1	ISM	ENSMUSG00000036402.14	ENSMUST00000043148.13	4248	5	122130	56	121636	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGCGTCATTGACTCC	NA	False	NA	1	True	ATTAAA	-16	NA	66995510	66998278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_66995500_66998300
ENSMUSG00000036402.14_3	chr6	+	4151	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114227.8	1125	5	-10	-3016	-2	-61	multi-exon	FALSE	canonical	2	75	junction_1	125.742544510599	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGGTCAGTGCGTCATTG	NA	False	NA	-4	True	ATTAAA	-11	NA	66873404	66998273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_66873500_66891436_66891495_66920808_66920862_66992708_66992828_66994447
ENSMUSG00000036402.14_4	chr6	+	4091	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114228.8	748	4	17	-3360	0	-61	multi-exon	FALSE	canonical	2	250	junction_2	52.550504807809	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGGTCAGTGCGTCATTG	NA	False	NA	-4	True	ATTAAA	-11	NA	66873423	66998273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447
ENSMUSG00000036402.14_5	chr6	+	3973	3	NNC	ENSMUSG00000036402.14	novel	1876	4	NA	NA	1	-106	at_least_one_novel_splicesite	FALSE	canonical	2	92	junction_1	138.5	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGCTCACAAATGTGAG	NA	False	NA	10	True	AATAAA	-21	NA	66873418	66998228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_66873500_66992716_66992828_66994447
ENSMUSG00000036402.14_6	chr6	+	4079	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114225.8	1876	4	0	-2203	0	-61	multi-exon	FALSE	canonical	2	75	junction_1	120.748590974066	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGGTCAGTGCGTCATTG	NA	False	NA	-4	True	ATTAAA	-11	NA	66873423	66998273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_66873500_66891436_66891495_66992708_66992828_66994447
ENSMUSG00000036403.16_2	chr5	+	5805	27	NNC	ENSMUSG00000036403.16	novel	5537	26	NA	NA	17	531	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	8.80021516681544	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTCTCTTTCTTTCCAA	NA	False	NA	5	True	AATAAA	-15	NA	76736564	76794844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_76736772_76739561_76739719_76741038_76741230_76741869_76742038_76743239_76743382_76745203_76745289_76749233_76749363_76750983_76751200_76754568_76754635_76757477_76757617_76759496_76759721_76763484_76763638_76764649_76764803_76769130_76769209_76772473_76772626_76778511_76778628_76778699_76778855_76779271_76779328_76780005_76780175_76781519_76781631_76781998_76782185_76784708_76784919_76785910_76786114_76786768_76786874_76788728_76788843_76792478_76794537_76794782
ENSMUSG00000036403.16_25	chr5	+	2118	1	NIC	ENSMUSG00000036403.16	novel	5537	26	NA	NA	52634	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCGGAAGGTCTTGTAGTA	NA	False	NA	NA	False	AATAAA	-20	NA	76792194	76794312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_76792200_76794300
ENSMUSG00000036403.16_4	chr5	+	5155	26	FSM	ENSMUSG00000036403.16	ENSMUST00000121979.8	5537	26	15	367	15	-366	multi-exon	FALSE	canonical	3	24	junction_14	5.86433286913354	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATACTAATCATGTACC	NA	False	NA	NA	False	AATAAA	-9	NA	76736562	76793946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_76736772_76739561_76739719_76741038_76741230_76741869_76742038_76743239_76743382_76745203_76745289_76749233_76749363_76750983_76751200_76754568_76754635_76757477_76757617_76759496_76759721_76763484_76763638_76764649_76764803_76769130_76769209_76772473_76772626_76778511_76778628_76778699_76778855_76779271_76779328_76780005_76780175_76781519_76781631_76781998_76782185_76784708_76784919_76785910_76786114_76786768_76786874_76788728_76788843_76792478
ENSMUSG00000036411.11_4	chr9	+	1174	2	ISM	ENSMUSG00000036411.11	ENSMUST00000058868.9	2223	7	-37	19669	-37	-10093	5prime_fragment	FALSE	canonical	3	18	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCTGTGTTCTCTGACTA	NA	False	NA	NA	False	AATAAA	-14	NA	22322771	22336308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_22323046_22335408
ENSMUSG00000036422.11_1	chr14	-	3689	3	FSM	ENSMUSG00000036422.11	ENSMUST00000195355.2	3704	3	2	13	2	-9	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTCATGTATTTGAAGAATC	NA	False	NA	-8	True	AATAAA	-6	NA	80008750	80004232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_80005188_80005550_80005762_80006227
ENSMUSG00000036427.6_0	chr7	-	2006	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	50	828	3	1	multi-exon	FALSE	canonical	3	1600	junction_15	166.521152162862	2770	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGGGCTCAGCCTCTTCA	NA	False	NA	-40	True	AATAAA	-17	NA	33929711	33901582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
ENSMUSG00000036430.9_0	chr17	+	1173	1	FSM	ENSMUSG00000036430.9	ENSMUST00000040434.9	1164	1	-16	7	-16	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGACTTTTGCTGGTTTG	5291	False	NA	14	True	ATTAAA	-14	NA	47201593	47202766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47201600_47202800
ENSMUSG00000036432.9_0	chr3	-	2200	2	FSM	ENSMUSG00000036432.9	ENSMUST00000070368.8	2511	2	290	21	290	-21	multi-exon	FALSE	canonical	3	158	junction_1	0	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGAATGTCATGCTT	NA	False	NA	-21	True	AATAAA	-9	NA	58599531	58582379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_58583865_58598816
ENSMUSG00000036435.14_1	chr5	+	3342	19	FSM	ENSMUSG00000036435.14	ENSMUST00000087133.11	3371	19	18	11	1	-2	multi-exon	FALSE	canonical	3	86	junction_10	33.5248203611431	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATATTTGATAATATTCT	NA	False	NA	6	True	AATAAA	-16	NA	76677175	76718130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
ENSMUSG00000036435.14_3	chr5	+	3299	18	FSM	ENSMUSG00000036435.14	ENSMUST00000049469.13	3272	18	-29	2	1	0	multi-exon	FALSE	canonical	3	47	junction_10	35.7889816992977	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATTTGATAATATTCTTA	NA	False	NA	8	True	AATAAA	-18	NA	76677175	76718132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
ENSMUSG00000036435.14_30	chr5	+	176	1	FSM	ENSMUSG00000036435.14	ENSMUST00000202151.2	2990	1	459	2355	459	-2355	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76700951	76701127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_76701000_76701100
ENSMUSG00000036438.15_0	chr17	-	1125	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	74	6	-5	-6	multi-exon	FALSE	canonical	3	6557	junction_1	335.908082665482	3568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAATTGTTGCTCTGAAT	NA	False	NA	-11	True	AATAAA	-15	NA	87754289	87740845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
ENSMUSG00000036442.9_0	chr8	+	1823	1	FSM	ENSMUSG00000036442.9	ENSMUST00000040445.9	1819	1	-5	1	-5	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	363	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGGGTTTCGACTTTTT	NA	False	NA	11	True	ATTAAA	-18	NA	106581758	106583581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106581800_106583600
ENSMUSG00000036450.5_0	chr19	+	6182	8	FSM	ENSMUSG00000036450.5	ENSMUST00000040455.5	6194	8	10	2	10	-2	multi-exon	FALSE	canonical	3	98	junction_5	13.1583759310508	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTATGTGACTTATTTA	NA	False	NA	9	True	NA	NA	NA	44551298	44564711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_44551494_44551728_44551980_44554316_44554466_44556773_44556920_44557842_44557950_44558331_44558396_44558665_44558777_44559552
ENSMUSG00000036450.5_12	chr19	+	2991	1	ISM	ENSMUSG00000036450.5	ENSMUST00000040455.5	6194	8	10432	2	10432	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTATGTGACTTATTTA	6764	False	NA	9	True	NA	NA	NA	44561720	44564711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_44561700_44564700
ENSMUSG00000036450.5_3	chr19	+	6561	7	NIC	ENSMUSG00000036450.5	novel	6194	8	NA	NA	11	-4	intron_retention	FALSE	canonical	3	103	junction_3	12.0749971244533	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAGTATGTGACTTATT	NA	False	NA	7	True	NA	NA	NA	44551299	44564709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_44551494_44551728_44551980_44554316_44554466_44556773_44556920_44557842_44558396_44558665_44558777_44559552
ENSMUSG00000036450.5_7	chr19	+	5699	6	ISM	ENSMUSG00000036450.5	ENSMUST00000040455.5	6194	8	3063	4	3063	-4	3prime_fragment	FALSE	canonical	3	98	junction_3	11.2249721603218	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAGTATGTGACTTATT	NA	False	NA	7	True	NA	NA	NA	44554351	44564709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_44554466_44556773_44556920_44557842_44557950_44558331_44558396_44558665_44558777_44559552
ENSMUSG00000036452.19_1	chr18	+	3966	23	FSM	ENSMUSG00000036452.19	ENSMUST00000155576.8	2280	23	-337	-1349	-6	0	multi-exon	FALSE	canonical	2	6	junction_21	7.92227219263608	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTATATGGTAAAGTT	NA	False	NA	NA	False	GATAAA	-21	NA	39126191	39505564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_39126683_39230682_39230779_39232624_39232687_39235221_39235294_39243507_39243610_39244842_39244954_39253171_39253277_39254826_39254957_39259885_39259987_39265108_39265204_39283092_39283172_39338336_39338374_39360420_39360487_39362943_39363019_39376658_39376747_39378335_39378395_39379871_39379978_39419579_39419740_39429837_39429977_39439754_39439906_39490605_39490717_39496169_39496262_39504126
ENSMUSG00000036452.19_14	chr18	+	2016	6	ISM	ENSMUSG00000036452.19	ENSMUST00000155576.8	2280	23	293133	-1356	-4826	7	3prime_fragment	FALSE	canonical	2	6	junction_4	11.2356575241505	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGGTAAAGTTTTATATT	NA	False	NA	NA	False	GATAAA	-28	NA	39419661	39505571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_39419740_39429837_39429977_39439754_39439906_39490605_39490717_39496169_39496262_39504126
ENSMUSG00000036452.19_2	chr18	+	2681	21	NIC	ENSMUSG00000036452.19	novel	6415	22	NA	NA	-7	-1	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	6.07124369466422	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGGGACTTTGAGCGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	39126190	39440425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_39126683_39230682_39230779_39232624_39232687_39235221_39235294_39243507_39243610_39244842_39244954_39253171_39253277_39254826_39254957_39259885_39259987_39265108_39265204_39283092_39283172_39338336_39338374_39360420_39360487_39362943_39363019_39376658_39376747_39378335_39378395_39379871_39379978_39419579_39419740_39429837_39429977_39439754_39439906_39440070
ENSMUSG00000036459.16_1	chr7	-	1931	8	FSM	ENSMUSG00000036459.16	ENSMUST00000038537.9	1962	8	22	9	22	-9	multi-exon	FALSE	canonical	3	249	junction_5	31.7027005866976	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTTGGACCATGGTGG	NA	False	NA	-11	True	AATATA	-11	NA	33832671	33808976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_33809665_33816018_33816088_33816736_33816789_33818099_33818231_33818361_33818425_33818563_33818632_33824909_33825012_33831913
ENSMUSG00000036459.16_3	chr7	-	2066	7	FSM	ENSMUSG00000036459.16	ENSMUST00000140911.4	968	7	-424	-674	26	-9	multi-exon	FALSE	canonical	3	259	junction_4	28.1286725997197	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTTGGACCATGGTGG	NA	False	NA	-11	True	AATATA	-11	NA	33832667	33808976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_33809665_33816018_33816088_33816736_33816789_33818099_33818231_33818361_33818632_33824909_33825012_33831913
ENSMUSG00000036461.17_1	chr14	+	4227	9	FSM	ENSMUSG00000036461.17	ENSMUST00000040131.13	4235	9	-14	22	-14	-22	multi-exon	FALSE	canonical	3	19	junction_5	6.51440711039769	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTCTGTTTTCAAGCA	NA	False	NA	NA	False	ATTAAA	-17	NA	79718619	79819912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_79719078_79773562_79773863_79798186_79798368_79802901_79803013_79804589_79804755_79806660_79806745_79808162_79808356_79810611_79811059_79817624
ENSMUSG00000036461.17_10	chr14	+	3894	9	FSM	ENSMUSG00000036461.17	ENSMUST00000110835.3	3888	9	-42	36	-42	-36	multi-exon	FALSE	canonical	3	8	junction_1	8.6854763830201	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAAAAGTTCTCAATATT	NA	False	NA	NA	False	ATTAAA	-3	NA	79753071	79819898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_79753211_79773562_79773863_79798186_79798368_79802901_79803013_79804589_79804755_79806660_79806745_79808162_79808356_79810611_79811059_79817624
ENSMUSG00000036461.17_14	chr14	+	2834	3	ISM	ENSMUSG00000036461.17	ENSMUST00000227192.2	3765	8	55129	24	55117	-24	3prime_fragment	FALSE	canonical	3	32	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATATTTCTGTTTTCAAG	NA	False	NA	NA	False	ATTAAA	-15	NA	79808254	79819910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_79808356_79810611_79811059_79817624
ENSMUSG00000036461.17_2	chr14	+	4116	8	NIC	ENSMUSG00000036461.17	novel	4235	9	NA	NA	-14	-22	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	10.5133539959852	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTCTGTTTTCAAGCA	NA	False	NA	NA	False	ATTAAA	-17	NA	79718619	79819912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_79719078_79773562_79773863_79798186_79798368_79804589_79804755_79806660_79806745_79808162_79808356_79810611_79811059_79817624
ENSMUSG00000036461.17_5	chr14	+	3600	8	NNC	ENSMUSG00000036461.17	novel	4235	9	NA	NA	44557	-22	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	10.507528884819	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTCTGTTTTCAAGCA	NA	False	NA	NA	False	ATTAAA	-17	NA	79797694	79819912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_79797826_79798186_79798368_79802901_79803013_79804589_79804755_79806660_79806745_79808162_79808356_79810611_79811059_79817624
ENSMUSG00000036461.17_6	chr14	+	3414	7	ISM	ENSMUSG00000036461.17	ENSMUST00000110835.3	3888	9	45128	22	45104	-22	3prime_fragment	FALSE	canonical	3	19	junction_3	6.47216261298253	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTCTGTTTTCAAGCA	NA	False	NA	NA	False	ATTAAA	-17	NA	79798241	79819912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_79798368_79802901_79803013_79804589_79804755_79806660_79806745_79808162_79808356_79810611_79811059_79817624
ENSMUSG00000036461.17_8	chr14	+	2445	2	ISM	ENSMUSG00000036461.17	ENSMUST00000227192.2	3765	8	57776	22	57764	-22	3prime_fragment	FALSE	canonical	3	39	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTCTGTTTTCAAGCA	NA	False	NA	NA	False	ATTAAA	-17	NA	79810901	79819912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_79811059_79817624
ENSMUSG00000036461.17_9	chr14	+	1852	1	ISM	ENSMUSG00000036461.17	ENSMUST00000040131.13	4235	9	99427	22	64923	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTCTGTTTTCAAGCA	NA	False	NA	NA	False	ATTAAA	-17	NA	79818060	79819912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_79818100_79819900
ENSMUSG00000036466.18_0	chr9	+	3454	25	FSM	ENSMUSG00000036466.18	ENSMUST00000068967.11	6680	25	-52	3278	8	-6	multi-exon	FALSE	canonical	2	5	junction_22	6.84348838921594	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGGTAGGTGTCTCACA	NA	False	NA	NA	False	AATAAA	-11	NA	64292915	64613209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64602645_64602765_64604588_64604656_64605088_64605191_64607378_64607436_64613008
ENSMUSG00000036466.18_10	chr9	+	3273	24	ISM	ENSMUSG00000036466.18	ENSMUST00000164113.8	6018	25	60	3278	0	-6	5prime_fragment	FALSE	canonical	1	2	junction_16	7.77325160107958	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGGTAGGTGTCTCACA	NA	False	NA	NA	False	AATAAA	-11	NA	64292967	64613209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64599076_64599206_64599636_64599766_64601042_64601280_64602645_64602765_64604588_64604656_64605088_64605191_64607378_64607436_64613008
ENSMUSG00000036466.18_14	chr9	+	4036	24	ISM	ENSMUSG00000036466.18	ENSMUST00000068967.11	6680	25	-32	8249	28	-19	5prime_fragment	FALSE	canonical	2	5	junction_22	6.82982450986398	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGGTATCAATGTGAT	NA	False	NA	NA	False	NA	NA	NA	64292935	64608238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64602645_64602765_64604588_64604656_64605088_64605191_64607378
ENSMUSG00000036466.18_27	chr9	+	3432	1	NIC	ENSMUSG00000036466.18	novel	6018	25	NA	NA	11966	-27	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATGGATTCTCAAACTA	NA	False	NA	NA	False	AATATA	-37	NA	64613028	64616460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_64613000_64616500
ENSMUSG00000036466.18_3	chr9	+	3274	23	NIC	ENSMUSG00000036466.18	novel	6680	25	NA	NA	26	1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_21	7.46686897108855	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTCTCACATAACTTA	NA	False	NA	NA	False	AATAAA	-18	NA	64292933	64613216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64602645_64602765_64607378_64607436_64613008
ENSMUSG00000036466.18_5	chr9	+	3534	22	NIC	ENSMUSG00000036466.18	novel	3944	23	NA	NA	26	-26	combination_of_known_junctions	FALSE	canonical	2	2	junction_20	7.74977141057075	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTATAAAAGTGGTATCA	NA	False	NA	NA	False	NA	NA	NA	64292933	64608231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64607378_64607436_64607644
ENSMUSG00000036466.18_6	chr9	+	3820	25	NIC	ENSMUSG00000036466.18	novel	6680	25	NA	NA	28	-26	combination_of_known_junctions	FALSE	canonical	2	5	junction_22	7.12378157223317	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTATAAAAGTGGTATCA	NA	False	NA	NA	False	NA	NA	NA	64292935	64608231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64602645_64602765_64604588_64604656_64605088_64605191_64607378_64607436_64607644
ENSMUSG00000036466.18_8	chr9	+	3173	22	ISM	ENSMUSG00000036466.18	ENSMUST00000118485.8	3944	23	8	1356	8	1	5prime_fragment	FALSE	canonical	2	2	junction_20	7.4422950157892	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTCTCACATAACTTA	NA	False	NA	NA	False	AATAAA	-18	NA	64292915	64613216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64607378_64607436_64613008
ENSMUSG00000036473.17_18	chr17	-	4290	10	NNC	ENSMUSG00000036473.17	novel	7265	10	NA	NA	1	319	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.4219616172109	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATCCTAATTTCTCTATT	NA	False	NA	NA	False	NA	NA	NA	24424508	24397209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_24399096_24399220_24399651_24400198_24400370_24400729_24400959_24401423_24401520_24401759_24401824_24402667_24402827_24404177_24405262_24408917_24409028_24424447
ENSMUSG00000036473.17_2	chr17	-	177	1	ISM	ENSMUSG00000036473.17	ENSMUST00000168410.9	7683	8	29734	194	5354	-193	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAACAGAA	NA	False	NA	NA	False	NA	NA	NA	24394775	24394598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_24394600_24394800
ENSMUSG00000036473.17_24	chr17	-	4777	9	NNC	ENSMUSG00000036473.17	novel	4383	9	NA	NA	1	356	intron_retention	FALSE	canonical	0	0	junction_1	9.74679434480896	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAATTTTTCCTATTTTT	NA	False	NA	NA	False	NA	NA	NA	24424496	24397172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_24399096_24399220_24400370_24400729_24400959_24401423_24401520_24401759_24401824_24402667_24402827_24404177_24405176_24408917_24409028_24424447
ENSMUSG00000036473.17_3	chr17	-	7623	9	NNC	ENSMUSG00000036473.17	novel	4081	9	NA	NA	1	-7	intron_retention	FALSE	canonical	0	0	junction_1	9.33742469849155	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGTATCTTTGTACATC	NA	False	NA	-15	True	AATAAA	-15	NA	24424496	24394412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_24399096_24399220_24400370_24400729_24400959_24401423_24401520_24401759_24401824_24402667_24402827_24404177_24405262_24408917_24409028_24424447
ENSMUSG00000036478.9_0	chr10	+	1812	2	FSM	ENSMUSG00000036478.9	ENSMUST00000038377.9	5001	2	4	3185	4	956	multi-exon	FALSE	canonical	3	461	junction_1	0	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCAATCTCTTGTCATGA	NA	False	NA	NA	False	AATAAA	-22	NA	96452871	96455486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_96453335_96454137
ENSMUSG00000036478.9_2	chr10	+	1110	1	ISM	ENSMUSG00000036478.9	ENSMUST00000038377.9	5001	2	1510	3184	962	957	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAATCTCTTGTCATGAT	NA	False	NA	NA	False	AATAAA	-23	NA	96454377	96455487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_96454400_96455500
ENSMUSG00000036492.13_0	chr17	+	1841	4	FSM	ENSMUSG00000036492.13	ENSMUST00000040498.12	1579	4	156	-418	19	418	multi-exon	FALSE	canonical	2	2	junction_1	1.4142135623731	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGTGCCATGGGTTTTG	7013	False	NA	NA	False	AATAAA	-9	NA	37253965	37259296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_37254343_37256065_37256089_37256295_37256388_37257947
ENSMUSG00000036499.10_0	chr10	+	7770	29	FSM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	-32	11	10	-11	multi-exon	FALSE	canonical	3	30	junction_7	7.28037269173854	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGATGTTATCCAATGAC	2747	False	NA	3	True	ATTAAA	-15	NA	95776579	95881369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_95776835_95809847_95809941_95825423_95825552_95826116_95826172_95826261_95826328_95829285_95829326_95830746_95830861_95831430_95831553_95832798_95832955_95838748_95838866_95846636_95846976_95847946_95848097_95849167_95849288_95853867_95854072_95855692_95855894_95857468_95857583_95859758_95859915_95861893_95862034_95862418_95862750_95862913_95863016_95864254_95864450_95867372_95867556_95872441_95872628_95873275_95873408_95874554_95874741_95875384_95875624_95876113_95876235_95877301_95877401_95877943
ENSMUSG00000036499.10_16	chr10	+	4213	6	ISM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	96664	1	96657	-1	3prime_fragment	FALSE	canonical	3	49	junction_1	3.18747549010185	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAATGACTATGATTGGT	NA	False	NA	13	True	ATTAAA	-25	NA	95873275	95881379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_95873408_95874554_95874741_95875384_95875624_95876113_95876235_95877301_95877401_95877943
ENSMUSG00000036499.10_18	chr10	+	3789	4	ISM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	98869	11	98862	-11	3prime_fragment	FALSE	canonical	3	53	junction_1	2.62466929133727	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGATGTTATCCAATGAC	NA	False	NA	3	True	ATTAAA	-15	NA	95875480	95881369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_95875624_95876113_95876235_95877301_95877401_95877943
ENSMUSG00000036499.10_19	chr10	+	3493	2	ISM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	100722	11	100715	-11	3prime_fragment	FALSE	canonical	3	54	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGATGTTATCCAATGAC	NA	False	NA	3	True	ATTAAA	-15	NA	95877333	95881369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_95877401_95877943
ENSMUSG00000036499.10_20	chr10	+	2739	1	ISM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	102019	11	102012	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGATGTTATCCAATGAC	NA	False	NA	3	True	ATTAAA	-15	NA	95878630	95881369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_95878600_95881400
ENSMUSG00000036499.10_31	chr10	+	4907	19	ISM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	70256	1497	70249	-1497	3prime_fragment	FALSE	canonical	3	33	junction_5	7.2995856469586	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTGAAGACACTGGAG	NA	False	NA	NA	False	ATTAAA	-20	NA	95846867	95879883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_95846976_95847946_95848097_95849167_95849288_95853867_95854072_95855692_95855894_95857468_95857583_95859758_95859915_95861893_95862034_95862418_95862750_95862913_95863016_95864254_95864450_95867372_95867556_95872441_95872628_95873275_95873408_95874554_95874741_95875384_95875624_95876113_95876235_95877301_95877401_95877943
ENSMUSG00000036499.10_34	chr10	+	4940	11	ISM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	85962	116	85955	-116	3prime_fragment	FALSE	canonical	3	37	junction_1	6.63023378170031	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAGCATTTAAATCTGT	NA	False	NA	NA	False	AATAAA	-16	NA	95862573	95881264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_95862750_95862913_95863016_95864254_95864450_95867372_95867556_95872441_95872628_95873275_95873408_95874554_95874741_95875384_95875624_95876113_95876235_95877301_95877401_95877943
ENSMUSG00000036499.10_35	chr10	+	4825	10	ISM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	86348	9	86341	-9	3prime_fragment	FALSE	canonical	3	41	junction_1	5.77564063038534	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATGTTATCCAATGACTA	NA	False	NA	5	True	ATTAAA	-17	NA	95862959	95881371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_95863016_95864254_95864450_95867372_95867556_95872441_95872628_95873275_95873408_95874554_95874741_95875384_95875624_95876113_95876235_95877301_95877401_95877943
ENSMUSG00000036500.5_0	chr1	+	2559	11	FSM	ENSMUSG00000036500.5	ENSMUST00000044878.4	1680	11	-70	-809	-35	809	multi-exon	TRUE	canonical	0	0	junction_2	0.894427190999916	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACAATAGCAATAGTCAT	NA	False	NA	NA	False	AATAAA	-11	NA	87052659	87056443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87052797_87052879_87052997_87053113_87053230_87053348_87053524_87053601_87053775_87054031_87054167_87054247_87054321_87054449_87054585_87054657_87054850_87055051_87055166_87055251
ENSMUSG00000036501.8_0	chr18	-	5115	21	FSM	ENSMUSG00000036501.8	ENSMUST00000040506.8	3344	21	7	-1778	-3	1778	multi-exon	FALSE	canonical	2	10	junction_18	10.452152888281	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCATTGTAAATGTATGT	NA	False	NA	-29	True	AATAAA	-17	NA	34639869	34573625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_34575819_34576953_34577056_34578329_34578494_34578584_34578669_34581078_34581175_34581420_34581505_34584260_34584491_34587086_34587169_34587706_34587837_34590716_34590928_34595113_34595262_34596013_34596063_34598208_34598274_34606602_34606739_34620031_34620193_34627209_34627352_34627651_34627830_34630386_34630600_34631020_34631213_34632738_34632906_34639581
ENSMUSG00000036501.8_12	chr18	-	3958	16	ISM	ENSMUSG00000036501.8	ENSMUST00000040506.8	3344	21	12644	-1778	15	1778	3prime_fragment	FALSE	canonical	3	19	junction_15	7.07735041444811	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCATTGTAAATGTATGT	NA	False	NA	-29	True	AATAAA	-17	NA	34627232	34573625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_34575819_34576953_34577056_34578329_34578494_34578584_34578669_34581078_34581175_34581420_34581505_34584260_34584491_34587086_34587169_34587706_34587837_34590716_34590928_34595113_34595262_34596013_34596063_34598208_34598274_34606602_34606739_34620031_34620193_34627209
ENSMUSG00000036501.8_24	chr18	-	5010	21	NNC	ENSMUSG00000036501.8	novel	3344	21	NA	NA	-4	1777	at_least_one_novel_splicesite	TRUE	canonical	3	9	junction_16	11.2338773359869	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTCATTGTAAATGTATG	NA	False	NA	-30	True	AATAAA	-16	NA	34639861	34573626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_34575819_34576953_34577056_34578329_34578494_34578584_34578669_34581078_34581175_34581420_34581505_34584260_34584491_34587086_34587169_34587706_34587837_34590716_34590928_34595113_34595262_34596013_34596063_34598208_34598274_34606602_34606739_34620031_34620193_34624069_34624166_34627209_34627352_34627651_34627830_34630386_34630600_34632738_34632906_34639581
ENSMUSG00000036501.8_5	chr18	-	3995	10	ISM	ENSMUSG00000036501.8	ENSMUST00000040506.8	3344	21	48329	-1777	-3711	1777	3prime_fragment	FALSE	canonical	3	35	junction_8	4.59468291736341	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTCATTGTAAATGTATG	4347	False	NA	-30	True	AATAAA	-16	NA	34591547	34573626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_34575819_34576953_34577056_34578329_34578494_34578584_34578669_34581078_34581175_34581420_34581505_34584260_34584491_34587086_34587169_34587706_34587837_34590716
ENSMUSG00000036501.8_6	chr18	-	4930	20	NIC	ENSMUSG00000036501.8	novel	3344	21	NA	NA	0	1778	combination_of_known_splicesites	FALSE	canonical	3	10	junction_18	9.19412072770848	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCATTGTAAATGTATGT	NA	False	NA	-29	True	AATAAA	-17	NA	34639876	34573625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_34575819_34576953_34577056_34578329_34578494_34578584_34578669_34581078_34581175_34581420_34581505_34584260_34584491_34587086_34587169_34587706_34587837_34590716_34590928_34595113_34595262_34596013_34596063_34598208_34598274_34606602_34606739_34620031_34620193_34627209_34627352_34627651_34627830_34630386_34630600_34632738_34632906_34639581
ENSMUSG00000036503.14_0	chr3	+	2242	10	FSM	ENSMUSG00000036503.14	ENSMUST00000041826.14	2678	10	28	408	5	-296	multi-exon	FALSE	canonical	3	101	junction_9	27.8053196793192	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCACCAAGTATTGTT	NA	False	NA	14	True	AATAAA	-14	NA	57643510	57742244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
ENSMUSG00000036503.14_5	chr3	+	2678	9	FSM	ENSMUSG00000036503.14	ENSMUST00000199041.2	1062	9	-25	-1591	10	-296	multi-exon	FALSE	canonical	3	113	junction_8	24.8281594162757	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCACCAAGTATTGTT	NA	False	NA	14	True	AATAAA	-14	NA	57643515	57742244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384
ENSMUSG00000036503.14_7	chr3	+	2266	10	NIC	ENSMUSG00000036503.14	novel	2678	10	NA	NA	1	-289	combination_of_known_junctions	FALSE	canonical	3	29	junction_5	45.5520323840878	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAGTATTGTTCTGGTGA	NA	False	NA	21	True	AATAAA	-21	NA	57643503	57742251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703717_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
ENSMUSG00000036504.7_0	chr2	-	150	1	NIC	ENSMUSG00000026941.17	novel	746	5	NA	NA	1266	-3256	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	6845	False	NA	-8	True	ATTAAA	-20	NA	25463591	25463441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25463400_25463600
ENSMUSG00000036513.16_0	chr3	-	956	5	FSM	ENSMUSG00000036513.16	ENSMUST00000160959.8	2992	5	25	2011	18	-1	multi-exon	FALSE	canonical	3	518	junction_3	10.5593560409714	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTATTTCTAGACAGTT	NA	False	NA	-12	True	AATAAA	-18	NA	57559111	57553780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_57554298_57557462_57557637_57558111_57558195_57558842_57558921_57559007
ENSMUSG00000036513.16_5	chr3	-	832	4	ISM	ENSMUSG00000036513.16	ENSMUST00000160959.8	2992	5	235	2012	228	-2	3prime_fragment	FALSE	canonical	3	518	junction_3	11.8977121983832	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAACTATTTCTAGACAGT	NA	False	NA	-13	True	AATAAA	-17	NA	57558901	57553781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_57554298_57557462_57557637_57558111_57558195_57558842
ENSMUSG00000036523.17_0	chr12	-	3704	12	ISM	ENSMUSG00000036523.17	ENSMUST00000048064.16	7940	33	60894	6	-5545	-6	3prime_fragment	FALSE	canonical	1	2	junction_2	3.11222595793158	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTGTTTGTGTGGTGG	6966	False	NA	-7	True	AATAAA	-12	NA	16746348	16720621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_16722545_16723746_16723886_16724610_16724812_16727688_16727825_16730200_16730420_16731330_16731506_16732128_16732334_16734362_16734525_16738497_16738641_16740759_16740919_16742685_16742789_16746209
ENSMUSG00000036523.17_3	chr12	-	3833	2	NIC	ENSMUSG00000036523.17	novel	8058	35	NA	NA	-15	-20384	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	16850902	16803662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_16807241_16850647
ENSMUSG00000036526.9_1	chr5	-	1286	6	FSM	ENSMUSG00000036526.9	ENSMUST00000196169.2	1299	6	6	7	6	-7	multi-exon	FALSE	canonical	2	4	junction_5	3.77359245282264	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGCAGAGGTTCTTAT	NA	False	NA	NA	False	ATTAAA	-14	NA	140867954	140858753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_140859285_140860095_140860212_140862151_140862277_140863717_140863898_140866052_140866189_140867756
ENSMUSG00000036528.17_2	chr7	+	3342	24	NIC	ENSMUSG00000036528.17	novel	3310	25	NA	NA	-8	-2	combination_of_known_junctions	FALSE	canonical	3	32	junction_3	7.22105721461798	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAAGTGTGAAACATTTT	7237	False	NA	NA	False	AATAAA	-14	NA	107194405	107344090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_107194587_107236420_107236518_107252224_107252440_107280968_107281062_107285066_107285181_107296773_107296906_107307986_107308080_107313792_107313905_107315842_107315905_107316911_107316988_107318414_107318519_107320537_107320606_107321310_107321369_107322143_107322186_107326850_107326993_107328345_107328473_107329027_107329157_107337047_107337199_107337481_107337594_107337807_107337897_107338393_107338517_107339714_107339841_107342112_107342302_107343383
ENSMUSG00000036528.17_31	chr7	+	1898	10	ISM	ENSMUSG00000036528.17	ENSMUST00000098134.5	3827	26	120798	3699	-15264	-1	internal_fragment	FALSE	canonical	3	35	junction_2	9.28692164176305	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGTGTGAAACATTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	107326848	107344091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_107326993_107328345_107328473_107329027_107329157_107337047_107337199_107337481_107337594_107337807_107337897_107338393_107338517_107339714_107339841_107342112_107342302_107343383
ENSMUSG00000036528.17_4	chr7	+	3228	26	NIC	ENSMUSG00000036528.17	novel	3310	25	NA	NA	-6	12	combination_of_known_junctions	FALSE	canonical	1	1	junction_24	13.6436945143169	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACAATGAGCTGTT	7239	False	NA	NA	False	NA	NA	NA	107194407	107347105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_107194587_107236420_107236518_107252224_107252440_107280968_107281062_107285066_107285181_107296773_107296906_107307986_107308080_107313792_107313905_107315842_107315905_107316911_107316988_107318414_107318519_107320537_107320606_107321310_107321369_107322143_107322186_107326850_107326993_107328345_107328473_107329027_107329157_107337047_107337199_107337481_107337594_107337807_107337897_107338393_107338517_107339714_107339841_107342112_107342302_107343383_107343561_107345577_107345644_107346753
ENSMUSG00000036529.18_1	chr15	-	6182	41	FSM	ENSMUSG00000036529.18	ENSMUST00000144585.9	6165	41	-20	3	-4	0	multi-exon	FALSE	canonical	3	242	junction_22	71.0688002923927	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAATTGTACGCCTGCAT	NA	False	NA	-18	True	TATAAA	-14	NA	89199478	89172488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89172929_89173014_89173147_89173224_89173313_89173807_89174020_89174125_89174234_89177638_89177870_89177941_89178073_89178147_89178275_89178346_89178533_89178605_89178708_89179335_89179516_89179597_89179780_89180154_89180233_89183685_89183824_89183907_89184105_89184423_89184632_89184730_89184868_89184975_89185155_89186045_89186174_89186384_89186581_89186654_89186729_89186807_89186981_89187079_89187349_89187422_89187582_89187675_89187745_89188012_89188163_89188887_89189001_89189083_89189289_89189365_89189465_89189546_89189676_89189746_89189861_89190197_89190276_89190382_89190497_89190571_89190681_89190780_89190914_89191032_89191139_89191695_89191807_89191889_89192049_89192224_89192363_89192687_89192774_89199264
ENSMUSG00000036529.18_34	chr15	-	6259	40	NIC	ENSMUSG00000036529.18	novel	6165	41	NA	NA	-4	0	intron_retention	FALSE	canonical	3	242	junction_22	71.9735962251656	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAATTGTACGCCTGCAT	NA	False	NA	-18	True	TATAAA	-14	NA	89199478	89172488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89172929_89173014_89173147_89173224_89173313_89173807_89174020_89174125_89174234_89177638_89177870_89177941_89178073_89178147_89178275_89178346_89178533_89178605_89178708_89179335_89179516_89179597_89179780_89180154_89180233_89183685_89183824_89183907_89184105_89184423_89184632_89184730_89184868_89184975_89185155_89186045_89186174_89186384_89186581_89186654_89186729_89186807_89186981_89187079_89187349_89187422_89187582_89187675_89187745_89188012_89188163_89188887_89189001_89189083_89189465_89189546_89189676_89189746_89189861_89190197_89190276_89190382_89190497_89190571_89190681_89190780_89190914_89191032_89191139_89191695_89191807_89191889_89192049_89192224_89192363_89192687_89192774_89199264
ENSMUSG00000036533.10_0	chr17	-	1985	2	FSM	ENSMUSG00000036533.10	ENSMUST00000068958.9	2265	2	6	274	6	-274	multi-exon	FALSE	canonical	3	71	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCAAAGTCTACATTTT	NA	False	NA	-6	True	AATATA	-23	NA	79662514	79641429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_79643146_79662245
ENSMUSG00000036533.10_1	chr17	-	1822	2	NNC	ENSMUSG00000036533.10	novel	2265	2	NA	NA	10320	-275	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTGCAAAGTCTACATTT	NA	False	NA	-7	True	AATATA	-22	NA	79650116	79641430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_79643146_79650009
ENSMUSG00000036534.7_0	chr8	-	3286	12	FSM	ENSMUSG00000036534.7	ENSMUST00000212270.2	3315	12	29	0	12	0	multi-exon	FALSE	canonical	3	212	junction_11	48.4964001390441	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTGTCTCCTTTATC	NA	False	NA	-4	True	AATAAA	-15	NA	96580138	96562551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
ENSMUSG00000036534.7_1	chr8	-	3263	11	ISM	ENSMUSG00000036534.7	ENSMUST00000212270.2	3315	12	630	0	613	0	3prime_fragment	FALSE	canonical	3	251	junction_7	40.918944267906	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTGTCTCCTTTATC	NA	False	NA	-4	True	AATAAA	-15	NA	96579537	96562551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429
ENSMUSG00000036534.7_11	chr8	-	3181	11	NIC	ENSMUSG00000036534.7	novel	3315	12	NA	NA	12	1	combination_of_known_junctions	FALSE	canonical	2	6	junction_10	98.0688023787382	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTGTCTCCTTTATCT	NA	False	NA	-3	True	AATAAA	-16	NA	96580138	96562550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96580113
ENSMUSG00000036534.7_2	chr8	-	3741	11	NIC	ENSMUSG00000036534.7	novel	3315	12	NA	NA	12	1	intron_retention	FALSE	canonical	3	212	junction_10	48.716013794234	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTGTCTCCTTTATCT	NA	False	NA	-3	True	AATAAA	-16	NA	96580138	96562550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_96564300_96567041_96567097_96568149_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
ENSMUSG00000036534.7_3	chr8	-	1363	1	ISM	ENSMUSG00000036534.7	ENSMUST00000040481.4	3333	12	16254	3	4394	1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTGTCTCCTTTATCT	NA	False	NA	-3	True	AATAAA	-16	NA	96563913	96562550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_96562600_96563900
ENSMUSG00000036537.7_0	chrX	+	1222	1	FSM	ENSMUSG00000036537.7	ENSMUST00000046433.7	1223	1	-3	4	-3	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCTTTTCTTTCTTTCT	NA	False	NA	17	True	AATAAA	-17	NA	36454894	36456116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36454900_36456100
ENSMUSG00000036550.17_17	chr8	-	7667	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	0	-10	combination_of_known_junctions	FALSE	canonical	3	306	junction_10	284.722571476751	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGAAAACTTTTGTCTG	NA	False	NA	-28	True	AATATA	-3	NA	96534061	96446793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459698_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ENSMUSG00000036550.17_18	chr8	-	7647	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	313	junction_31	280.538170184657	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACTTTTGTCTGAAAC	NA	False	NA	-24	True	AATATA	-7	NA	96534061	96446789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481737_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ENSMUSG00000036550.17_2	chr8	-	7640	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	-5	-6	combination_of_known_junctions	FALSE	canonical	3	469	junction_30	257.98436106779	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACTTTTGTCTGAAAC	NA	False	NA	-24	True	AATATA	-7	NA	96534066	96446789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ENSMUSG00000036550.17_45	chr8	-	7639	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	-7	-6	combination_of_known_junctions	FALSE	canonical	3	313	junction_31	292.082375622538	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACTTTTGTCTGAAAC	NA	False	NA	-24	True	AATATA	-7	NA	96534068	96446789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481737_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ENSMUSG00000036550.17_7	chr8	-	7650	49	FSM	ENSMUSG00000036550.17	ENSMUST00000098473.11	8390	49	29	711	0	-6	multi-exon	FALSE	canonical	3	674	junction_30	244.612610932232	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACTTTTGTCTGAAAC	NA	False	NA	-24	True	AATATA	-7	NA	96534061	96446789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ENSMUSG00000036550.17_9	chr8	-	7656	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	-4	-10	combination_of_known_junctions	FALSE	canonical	3	306	junction_10	296.058006674321	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGAAAACTTTTGTCTG	NA	False	NA	-28	True	AATATA	-3	NA	96534065	96446793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459698_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ENSMUSG00000036552.20_2	chr17	+	2496	18	FSM	ENSMUSG00000036552.20	ENSMUST00000097393.11	2535	18	411	-372	4	-1	multi-exon	FALSE	canonical	0	0	junction_7	62.8043041744542	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCATGAACTCTATGTTG	NA	False	NA	4	True	ATTAAA	-17	NA	15261880	15284484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283863
ENSMUSG00000036552.20_67	chr17	+	1662	8	NIC	ENSMUSG00000036552.20	novel	1342	8	NA	NA	-3	1	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	36.4809147754979	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGAACTCTATGTTGCC	NA	False	NA	6	True	ATTAAA	-19	NA	15273100	15284486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_15273346_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283863
ENSMUSG00000036552.20_7	chr17	+	2509	18	NIC	ENSMUSG00000036552.20	novel	2535	18	NA	NA	5	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	59.4887678037601	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTTTACCATGAACT	NA	False	NA	-4	True	ATTAAA	-9	NA	15261881	15284476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
ENSMUSG00000036552.20_8	chr17	+	4772	18	NNC	ENSMUSG00000036552.20	novel	2535	18	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	62.9965122338786	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGAACTCTATGTTGC	NA	False	NA	5	True	ATTAAA	-18	NA	15261881	15284485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15281587
ENSMUSG00000036553.17_1	chr5	-	4290	18	FSM	ENSMUSG00000036553.17	ENSMUST00000201511.2	4246	18	-47	3	-47	-1	multi-exon	FALSE	canonical	3	51	junction_17	16.3400287573917	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAACTCTGGTATCTTCTA	NA	False	NA	-11	True	AGTAAA	-9	NA	35897378	35854529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35878873_35878949_35881257_35881489_35897301
ENSMUSG00000036553.17_2	chr5	-	2340	7	ISM	ENSMUSG00000036553.17	ENSMUST00000129664.8	3411	12	9239	0	9239	0	3prime_fragment	FALSE	canonical	3	76	junction_6	15.0517625398342	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGGTATCTTCTAGGT	NA	False	NA	-8	True	AGTAAA	-12	NA	35864356	35854526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205
ENSMUSG00000036553.17_30	chr5	-	4222	17	NIC	ENSMUSG00000036553.17	novel	4549	18	NA	NA	-18	-1	combination_of_known_splicesites	FALSE	canonical	2	6	junction_15	26.8048503073604	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAACTCTGGTATCTTCTA	NA	False	NA	-11	True	AGTAAA	-9	NA	35886374	35854529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35881257_35881489_35886290
ENSMUSG00000036553.17_4	chr5	-	4203	17	NIC	ENSMUSG00000036553.17	novel	4246	18	NA	NA	-35	-1	combination_of_known_splicesites	FALSE	canonical	2	6	junction_15	23.5478236786332	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAACTCTGGTATCTTCTA	NA	False	NA	-11	True	AGTAAA	-9	NA	35897366	35854529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35881257_35881489_35897301
ENSMUSG00000036553.17_8	chr5	-	4300	18	FSM	ENSMUSG00000036553.17	ENSMUST00000070203.14	4549	18	246	3	-18	0	multi-exon	FALSE	canonical	3	19	junction_17	20.7093914138867	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGGTATCTTCTAGGT	NA	False	NA	-8	True	AGTAAA	-12	NA	35886374	35854526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35878873_35878949_35881257_35881489_35886290
ENSMUSG00000036555.15_0	chr5	-	1204	1	ISM	ENSMUSG00000036555.15	ENSMUST00000041783.14	6037	23	37668	1680	1531	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTCTGCCTTTGGCAGG	NA	False	NA	NA	False	AGTAAA	-16	NA	140650465	140649261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_140649300_140650500
ENSMUSG00000036555.15_10	chr5	-	2441	21	ISM	ENSMUSG00000036555.15	ENSMUST00000041783.14	6037	23	96	8272	-6	-3941	5prime_fragment	FALSE	canonical	3	15	junction_8	7.13161973187017	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAGATCTAGCTTATTGA	4507	False	NA	NA	False	ATTAAA	-14	NA	140688037	140655853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
ENSMUSG00000036555.15_13	chr5	-	3151	11	ISM	ENSMUSG00000036555.15	ENSMUST00000041783.14	6037	23	112	21940	-1	43	5prime_fragment	FALSE	canonical	3	19	junction_4	6.58862656401165	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTCGCTGGAGTTAGAC	4523	False	NA	NA	False	AATAAA	-15	NA	140688021	140669521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
ENSMUSG00000036555.15_17	chr5	-	4354	24	NIC	ENSMUSG00000036555.15	novel	6037	23	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	8.69652169565652	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGCCTCTGCCTTTGGCA	4496	False	NA	NA	False	AGTAAA	-14	NA	140688048	140649263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_140651249_140651762_140651964_140654776_140654861_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
ENSMUSG00000036555.15_3	chr5	-	4291	23	FSM	ENSMUSG00000036555.15	ENSMUST00000041783.14	6037	23	64	1682	-14	-4	multi-exon	FALSE	canonical	3	8	junction_2	7.69995170103989	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGCCTCTGCCTTTGGCA	4475	False	NA	NA	False	AGTAAA	-14	NA	140688069	140649263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_140651249_140651762_140651964_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
ENSMUSG00000036555.15_7	chr5	-	2612	24	NIC	ENSMUSG00000036555.15	novel	6037	23	NA	NA	9	22	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	8.47948709081224	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGTGTCGTGCCTTTG	4504	False	NA	NA	False	NA	NA	NA	140688040	140651012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_140651249_140651762_140651964_140654776_140654876_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
ENSMUSG00000036555.15_8	chr5	-	4126	22	NIC	ENSMUSG00000036555.15	novel	6037	23	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	8.36660026534076	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTCTGCCTTTGGCAGG	4507	False	NA	NA	False	AGTAAA	-16	NA	140688037	140649261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_140651249_140651762_140651964_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140679169_140679299_140682762_140682809_140685439_140685488_140687936
ENSMUSG00000036561.10_2	chr15	+	3510	25	NIC	ENSMUSG00000036561.10	novel	3378	25	NA	NA	1	11	combination_of_known_junctions	FALSE	canonical	1	2	junction_16	7.25718035235908	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGTTGGATGACCCAGC	6664	False	NA	NA	False	AATAAA	-28	NA	89095756	89170478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_89095983_89126362_89126492_89127507_89127663_89130460_89130544_89137221_89137465_89140865_89141053_89143268_89143407_89146555_89146622_89149331_89149445_89149807_89149922_89152705_89152833_89154012_89154166_89158172_89158389_89159655_89159721_89161457_89161574_89162901_89162988_89163922_89164021_89164209_89164268_89164561_89164687_89164957_89165122_89166050_89166208_89166293_89166383_89167085_89167282_89169981_89170210_89170300
ENSMUSG00000036561.10_3	chr15	+	1358	8	FSM	ENSMUSG00000036561.10	ENSMUST00000226779.2	2072	8	-2	716	-2	-716	multi-exon	FALSE	canonical	2	19	junction_2	4.65109159888563	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCTAATGTCTGGGTAA	6667	False	NA	NA	False	NA	NA	NA	89095759	89146755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_89095983_89126362_89126492_89127507_89127663_89130460_89130544_89137221_89137465_89140865_89141053_89143268_89143407_89146555
ENSMUSG00000036561.10_5	chr15	+	3585	26	NIC	ENSMUSG00000036561.10	novel	3378	25	NA	NA	1	11	combination_of_known_junctions	FALSE	canonical	2	7	junction_17	6.88697321034429	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGTTGGATGACCCAGC	6670	False	NA	NA	False	AATAAA	-28	NA	89095762	89170478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_89095983_89126362_89126492_89127507_89127663_89130460_89130544_89137221_89137465_89140865_89141053_89143268_89143407_89146555_89146622_89149331_89149445_89149807_89149922_89152705_89152833_89154012_89154166_89158172_89158389_89159655_89159721_89161457_89161574_89162901_89162988_89163475_89163557_89163922_89164021_89164209_89164268_89164561_89164687_89164957_89165122_89166050_89166208_89166293_89166383_89167085_89167282_89169981_89170210_89170300
ENSMUSG00000036564.18_2	chr8	+	3007	16	NIC	ENSMUSG00000036564.18	novel	3101	17	NA	NA	53	2	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	8.57023272081271	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTGTGTCGTGTTTCCTA	NA	False	NA	7	True	AATAAA	-12	NA	96404765	96441582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_96405012_96423821_96423917_96426740_96426786_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
ENSMUSG00000036564.18_3	chr8	+	2757	15	NIC	ENSMUSG00000036564.18	novel	3101	17	NA	NA	-5839	2	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	7.54476436926662	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTGTGTCGTGTTTCCTA	NA	False	NA	7	True	AATAAA	-12	NA	96423825	96441582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_96423917_96426740_96426786_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
ENSMUSG00000036564.18_4	chr8	+	2743	14	FSM	ENSMUSG00000036564.18	ENSMUST00000080666.8	2738	14	-7	2	-7	2	multi-exon	FALSE	canonical	3	13	junction_5	6.1711295754251	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTGTGTCGTGTTTCCTA	NA	False	NA	7	True	AATAAA	-12	NA	96429683	96441582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_96429806_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
ENSMUSG00000036564.18_6	chr8	+	3198	13	ISM	ENSMUSG00000036564.18	ENSMUST00000080666.8	2738	14	2549	1	-962	-1	3prime_fragment	FALSE	canonical	3	13	junction_4	6.27162924074226	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGTGTCGTGTTTCCTAT	NA	False	NA	8	True	AATAAA	-13	NA	96432239	96441583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
ENSMUSG00000036564.18_7	chr8	+	3239	10	NIC	ENSMUSG00000036564.18	novel	2738	14	NA	NA	22	2	intron_retention	FALSE	canonical	3	13	junction_3	6.04509800388242	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTGTGTCGTGTTTCCTA	NA	False	NA	7	True	AATAAA	-12	NA	96433223	96441582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96437340_96437561_96437598_96437720_96437773_96439805
ENSMUSG00000036564.18_8	chr8	+	2841	16	NIC	ENSMUSG00000036564.18	novel	713	11	NA	NA	-293	2	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	8.44169545898347	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTGTGTCGTGTTTCCTA	NA	False	NA	7	True	AATAAA	-12	NA	96404419	96441582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_96404500_96423821_96423917_96426740_96426786_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
ENSMUSG00000036565.8_0	chr5	-	3157	3	ISM	ENSMUSG00000036565.8	ENSMUST00000042661.8	4658	14	21775	8	31	-8	3prime_fragment	FALSE	canonical	3	60	junction_1	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAACAGCTCTCTCTCTC	9829	False	NA	NA	False	AATAAA	-8	NA	140613011	140606340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_140609287_140612205_140612282_140612876
ENSMUSG00000036565.8_2	chr5	-	4659	14	FSM	ENSMUSG00000036565.8	ENSMUST00000042661.8	4658	14	-9	8	-9	-8	multi-exon	FALSE	canonical	3	60	junction_1	9.95255014746823	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAACAGCTCTCTCTCTC	1267	False	NA	NA	False	AATAAA	-8	NA	140634795	140606340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_140609287_140612205_140612282_140612876_140613051_140615136_140615274_140615469_140615563_140617247_140617341_140617942_140617999_140619019_140619096_140619318_140619392_140620513_140620610_140620936_140621158_140621268_140621381_140621651_140621822_140634459
ENSMUSG00000036565.8_4	chr5	-	1256	1	ISM	ENSMUSG00000036565.8	ENSMUST00000197452.5	4576	13	27184	8	5446	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAACAGCTCTCTCTCTC	2090	False	NA	NA	False	AATAAA	-8	NA	140607596	140606340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_140606300_140607600
ENSMUSG00000036568.8_0	chr17	-	4353	6	ISM	ENSMUSG00000036568.8	ENSMUST00000040624.7	6575	11	19245	5	17	-5	3prime_fragment	FALSE	canonical	3	125	junction_4	7.22772439983706	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACGTGTCACTGTGATT	NA	False	NA	-9	True	AATACA	-14	NA	47123094	47109050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849
ENSMUSG00000036568.8_1	chr17	-	4276	7	NIC	ENSMUSG00000036568.8	novel	6575	11	NA	NA	-20	-5	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	45.4266808531433	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACGTGTCACTGTGATT	NA	False	NA	-9	True	AATACA	-14	NA	47123131	47109050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47123064
ENSMUSG00000036568.8_10	chr17	-	6282	12	NIC	ENSMUSG00000036568.8	novel	3685	12	NA	NA	-82	-5	combination_of_known_junctions	FALSE	canonical	3	40	junction_11	40.0510005446568	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACGTGTCACTGTGATT	NA	False	NA	-9	True	AATACA	-14	NA	47169490	47109050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47124858_47124965_47135375_47137050_47140837_47140907_47140990_47141040_47141876_47141923_47169361
ENSMUSG00000036568.8_4	chr17	-	3031	1	ISM	ENSMUSG00000036568.8	ENSMUST00000040624.7	6575	11	30258	5	11030	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACGTGTCACTGTGATT	NA	False	NA	-9	True	AATACA	-14	NA	47112081	47109050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_47109000_47112100
ENSMUSG00000036568.8_7	chr17	-	5074	8	ISM	ENSMUSG00000036568.8	ENSMUST00000040624.7	6575	11	6205	5	6205	-5	3prime_fragment	FALSE	canonical	3	44	junction_7	37.4198463112716	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACGTGTCACTGTGATT	NA	False	NA	-9	True	AATACA	-14	NA	47136134	47109050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47124858_47124965_47135375
ENSMUSG00000036568.8_9	chr17	-	4249	7	NNC	ENSMUSG00000036568.8	novel	6575	11	NA	NA	-263	-5	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_6	43.9523100138725	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACGTGTCACTGTGATT	NA	False	NA	-9	True	AATACA	-14	NA	47123374	47109050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47123334
ENSMUSG00000036572.17_0	chrX	-	2365	11	NIC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	16	-2	combination_of_known_junctions	FALSE	canonical	3	132	junction_3	55.9360348970143	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGCGTTTATTTATTCA	NA	False	NA	-3	True	AATAAA	-22	NA	36373959	36355332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_36356315_36359174_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
ENSMUSG00000036572.17_1	chrX	-	2327	10	FSM	ENSMUSG00000036572.17	ENSMUST00000076265.13	2344	10	14	3	14	-3	multi-exon	FALSE	canonical	3	68	junction_3	69.0213779729436	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTGCGTTTATTTATTC	NA	False	NA	-4	True	AATAAA	-21	NA	36373961	36355333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36356315_36359174_36359476_36360510_36360672_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
ENSMUSG00000036572.17_2	chrX	-	1525	3	ISM	ENSMUSG00000036572.17	ENSMUST00000076265.13	2344	10	13223	2	7424	-2	3prime_fragment	FALSE	canonical	3	274	junction_1	18	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGCGTTTATTTATTCA	NA	False	NA	-3	True	AATAAA	-22	NA	36360752	36355332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_36356315_36359174_36359476_36360510
ENSMUSG00000036572.17_3	chrX	-	1143	2	ISM	ENSMUSG00000036572.17	ENSMUST00000076265.13	2344	10	14640	2	8841	-2	3prime_fragment	FALSE	canonical	3	274	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGCGTTTATTTATTCA	NA	False	NA	-3	True	AATAAA	-22	NA	36359335	36355332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_36356315_36359174
ENSMUSG00000036580.16_2	chr3	+	3752	9	FSM	ENSMUSG00000036580.16	ENSMUST00000044116.14	3770	9	7	11	2	0	multi-exon	FALSE	canonical	0	0	junction_4	65.469339197826	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCTGGGCCTCAGATGT	NA	False	NA	10	True	AATAAA	-11	NA	55019535	55044732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
ENSMUSG00000036580.16_21	chr3	+	3272	8	ISM	ENSMUSG00000036580.16	ENSMUST00000118118.8	3981	9	5195	6	1184	0	3prime_fragment	FALSE	canonical	0	0	junction_3	63.0157090877881	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCTGGGCCTCAGATGT	NA	False	NA	10	True	AATAAA	-11	NA	55024781	55044732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
ENSMUSG00000036580.16_3	chr3	+	4025	9	FSM	ENSMUSG00000036580.16	ENSMUST00000118118.8	3981	9	-51	7	2	-1	multi-exon	TRUE	canonical	0	0	junction_4	69.2431178890726	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGCTGGGCCTCAGATG	NA	False	NA	9	True	AATAAA	-10	NA	55019535	55044731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_55019913_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
ENSMUSG00000036580.16_7	chr3	+	3580	8	FSM	ENSMUSG00000036580.16	ENSMUST00000107971.9	3567	8	-13	0	3	0	multi-exon	FALSE	canonical	3	36	junction_3	57.8710741604975	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCTGGGCCTCAGATGT	NA	False	NA	10	True	AATAAA	-11	NA	55019536	55044732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
ENSMUSG00000036591.17_17	chr2	-	2323	1	ISM	ENSMUSG00000036591.17	ENSMUST00000154230.9	6972	25	117457	23	2983	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTGCACTGTTGGGAGC	NA	False	NA	-23	True	AATAAA	-13	NA	20855075	20852752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_20852800_20855100
ENSMUSG00000036591.17_2	chr2	-	5208	18	ISM	ENSMUSG00000036591.17	ENSMUST00000173194.8	6920	24	86756	2	2265	-2	3prime_fragment	FALSE	canonical	3	92	junction_6	12.7135053385398	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTGCACTGTTGGGAGC	NA	False	NA	-23	True	AATAAA	-13	NA	20885775	20852752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_20855197_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528_20864608_20864691_20864848_20865114_20865258_20865781_20865919_20865996_20866062_20867890_20868176_20870075_20870202_20872612_20872650_20876202_20876306_20876420_20876580_20884771
ENSMUSG00000036591.17_22	chr2	-	4772	18	NIC	ENSMUSG00000036591.17	novel	4299	20	NA	NA	2704	-2	combination_of_known_junctions	FALSE	canonical	2	15	junction_11	25.6035789020823	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTGCACTGTTGGGAGC	NA	False	NA	-23	True	AATAAA	-13	NA	20885336	20852752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_20855197_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528_20864608_20864691_20864848_20865114_20865258_20865781_20865922_20865996_20866062_20867890_20868176_20870075_20870202_20872612_20872650_20876202_20876306_20876420_20876580_20884771
ENSMUSG00000036591.17_3	chr2	-	7033	25	NIC	ENSMUSG00000036591.17	novel	6920	24	NA	NA	29	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_24	19.6061480578585	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCACTGTTGGGAGCTT	NA	False	NA	-21	True	AATAAA	-15	NA	20973407	20852750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_20855197_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528_20864608_20864691_20864848_20865114_20865258_20865781_20865919_20865996_20866062_20867890_20868176_20870075_20870202_20872612_20872650_20876202_20876306_20876420_20876580_20884771_20886663_20891916_20891972_20894685_20894765_20896895_20896989_20917087_20917113_20919442_20919623_20972140_20972532_20973294
ENSMUSG00000036591.17_30	chr2	-	7038	25	NIC	ENSMUSG00000036591.17	novel	6920	24	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	2	15	junction_11	27.0262218348527	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCACTGTTGGGAGCTT	NA	False	NA	-21	True	AATAAA	-15	NA	20973405	20852750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_20855197_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528_20864608_20864691_20864848_20865114_20865258_20865781_20865922_20865996_20866062_20867890_20868176_20870075_20870202_20872612_20872650_20876202_20876306_20876420_20876580_20884771_20886663_20891916_20891972_20894685_20894765_20896895_20896989_20917087_20917113_20919442_20919623_20972140_20972532_20973290
ENSMUSG00000036591.17_4	chr2	-	7043	25	NIC	ENSMUSG00000036591.17	novel	6920	24	NA	NA	21	-2	combination_of_known_junctions	FALSE	canonical	3	31	junction_24	20.8291662499166	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTGCACTGTTGGGAGC	NA	False	NA	-23	True	AATAAA	-13	NA	20973415	20852752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_20855197_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528_20864608_20864691_20864848_20865114_20865258_20865781_20865919_20865996_20866062_20867890_20868176_20870075_20870202_20872612_20872650_20876202_20876306_20876420_20876580_20884771_20886663_20891916_20891972_20894685_20894765_20896895_20896989_20917087_20917113_20919442_20919623_20972140_20972532_20973290
ENSMUSG00000036591.17_6	chr2	-	7032	25	NIC	ENSMUSG00000036591.17	novel	6339	26	NA	NA	31	-2	combination_of_known_junctions	FALSE	canonical	2	15	junction_11	26.1419402812161	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTGCACTGTTGGGAGC	NA	False	NA	-23	True	AATAAA	-13	NA	20973405	20852752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_20855197_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528_20864608_20864691_20864848_20865114_20865258_20865781_20865922_20865996_20866062_20867890_20868176_20870075_20870202_20872612_20872650_20876202_20876306_20876420_20876580_20884771_20886663_20891916_20891972_20894685_20894765_20896895_20896989_20917087_20917113_20919442_20919623_20972140_20972532_20973294
ENSMUSG00000036594.16_0	chr17	-	1121	5	FSM	ENSMUSG00000036594.16	ENSMUST00000040655.14	1128	5	1	6	1	-6	multi-exon	FALSE	canonical	2	6	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGGTTTGGTTTGGTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	34506796	34501723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34501998_34502128_34502304_34502548_34502831_34503261_34503511_34506655
ENSMUSG00000036598.5_0	chr8	+	1260	9	FSM	ENSMUSG00000036598.5	ENSMUST00000041569.5	1288	9	26	2	26	-2	multi-exon	FALSE	canonical	2	7	junction_1	2.77263412660235	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGGGTCCTCTCACTTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	96260738	96285516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_96260901_96263092_96263220_96264719_96264882_96267426_96267583_96269249_96269331_96272521_96272678_96277824_96277933_96283818_96283975_96285364
ENSMUSG00000036599.11_1	chr5	+	1781	2	FSM	ENSMUSG00000036599.11	ENSMUST00000043050.9	2331	2	63	487	38	-487	multi-exon	FALSE	canonical	3	68	junction_1	0	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGGCATTCCTGTGGTT	NA	False	NA	18	True	AGTAAA	-14	NA	140491367	140510992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_140491452_140509295
ENSMUSG00000036599.11_2	chr5	+	1794	2	FSM	ENSMUSG00000036599.11	ENSMUST00000124142.2	766	2	56	-1084	56	-487	multi-exon	FALSE	canonical	3	9	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGGCATTCCTGTGGTT	NA	False	NA	18	True	AGTAAA	-14	NA	140491385	140510992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_140491483_140509295
ENSMUSG00000036599.11_3	chr5	+	1618	1	ISM	ENSMUSG00000036599.11	ENSMUST00000043050.9	2331	2	18052	505	18027	-505	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTGTGGCACCCGCAC	1618	False	NA	0	True	AATATA	-40	NA	140509356	140510974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_140509400_140511000
ENSMUSG00000036606.18_0	chr15	-	6428	38	FSM	ENSMUSG00000036606.18	ENSMUST00000109331.9	6497	38	63	6	63	-6	multi-exon	FALSE	canonical	0	0	junction_37	73.775209877053	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTGGTTGACTGGGTT	9206	False	NA	-11	True	AATACA	-13	NA	89064928	89039757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89040589_89040700_89040776_89041195_89041272_89041388_89041454_89041594_89041743_89041837_89041999_89042103_89042259_89042438_89042524_89042627_89042729_89042829_89042987_89043161_89043309_89043429_89043497_89043663_89043846_89043975_89044206_89044363_89044465_89044570_89044711_89044809_89044987_89045087_89045316_89045426_89045560_89045877_89046049_89046188_89046326_89046453_89046563_89046649_89046799_89046889_89047051_89047125_89047208_89047480_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449_89049604_89049905_89050033_89050108_89050210_89050568_89050698_89050786_89050970_89051143_89052231_89054771_89054821_89055269_89055320_89064867
ENSMUSG00000036606.18_1	chr15	-	5850	35	ISM	ENSMUSG00000036606.18	ENSMUST00000060808.10	6394	36	3079	6	-1812	-6	3prime_fragment	FALSE	canonical	3	228	junction_31	54.2875290757351	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTGGTTGACTGGGTT	NA	False	NA	-11	True	AATACA	-13	NA	89051812	89039757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89040589_89040700_89040776_89041195_89041272_89041388_89041454_89041594_89041743_89041837_89041999_89042103_89042259_89042438_89042524_89042627_89042729_89042829_89042987_89043161_89043309_89043429_89043497_89043663_89043846_89043975_89044206_89044363_89044465_89044570_89044711_89044809_89044987_89045087_89045316_89045426_89045560_89045877_89046049_89046188_89046326_89046453_89046563_89046649_89046799_89046889_89047051_89047125_89047208_89047480_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449_89049604_89049905_89050033_89050108_89050210_89050568_89050698_89050786_89050970_89051143
ENSMUSG00000036606.18_19	chr15	-	6399	37	NIC	ENSMUSG00000036606.18	novel	6497	38	NA	NA	44	-4	intron_retention	FALSE	canonical	3	14	junction_36	72.4702312234496	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGTTGACTGGGTTTC	9187	False	NA	-9	True	AATACA	-15	NA	89064947	89039755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89040589_89040700_89040776_89041195_89041272_89041388_89041454_89041594_89041743_89041837_89041999_89042103_89042259_89042438_89042524_89042627_89042729_89042829_89042987_89043161_89043309_89043429_89043497_89043663_89043846_89043975_89044206_89044363_89044465_89044570_89044711_89044809_89044987_89045087_89045316_89045426_89045560_89045877_89046049_89046188_89046326_89046453_89046563_89046649_89046799_89046889_89047051_89047125_89047208_89047480_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449_89049604_89049905_89050033_89050108_89050210_89050568_89050698_89050786_89050970_89051143_89052231_89054771_89054821_89064867
ENSMUSG00000036606.18_9	chr15	-	6350	39	NIC	ENSMUSG00000036606.18	novel	6497	38	NA	NA	63	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_38	84.6279007121609	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTGGTTGACTGGGTT	9206	False	NA	-11	True	AATACA	-13	NA	89064928	89039757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89040381_89040458_89040589_89040700_89040776_89041195_89041272_89041388_89041454_89041594_89041743_89041837_89041999_89042103_89042259_89042438_89042524_89042627_89042729_89042829_89042987_89043161_89043309_89043429_89043497_89043663_89043846_89043975_89044206_89044363_89044465_89044570_89044711_89044809_89044987_89045087_89045316_89045426_89045560_89045877_89046049_89046188_89046326_89046453_89046563_89046649_89046799_89046889_89047051_89047125_89047208_89047480_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449_89049604_89049905_89050033_89050108_89050210_89050568_89050698_89050786_89050970_89051143_89052231_89054771_89054821_89055269_89055320_89064867
ENSMUSG00000036611.6_0	chr9	+	2707	8	FSM	ENSMUSG00000036611.6	ENSMUST00000040677.6	2723	8	11	5	11	-5	multi-exon	FALSE	canonical	3	10	junction_4	5.11101251999952	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTCAGAGTGTGGAAT	NA	False	NA	10	True	AATAAA	-18	NA	25392853	25515401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_25393193_25393576_25394616_25458847_25458900_25493187_25493299_25497957_25498093_25500730_25500870_25505856_25506052_25514704
ENSMUSG00000036613.9_0	chr12	+	1765	10	FSM	ENSMUSG00000036613.9	ENSMUST00000035657.9	1747	10	-24	6	-8	-6	multi-exon	FALSE	canonical	2	6	junction_3	106.926188918072	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCATTAGGCTCTTTGTT	1126	False	NA	1	True	NA	NA	NA	28801829	28917484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28843853_28843936_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
ENSMUSG00000036613.9_1	chr12	+	1674	9	FSM	ENSMUSG00000036613.9	ENSMUST00000221877.2	4091	9	37	2380	1	-6	multi-exon	FALSE	canonical	3	234	junction_3	17.1641887370187	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCATTAGGCTCTTTGTT	1135	False	NA	1	True	NA	NA	NA	28801838	28917484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
ENSMUSG00000036615.8_0	chr3	-	1075	3	FSM	ENSMUSG00000036615.8	ENSMUST00000044373.6	2162	3	7	1080	7	26	multi-exon	FALSE	canonical	3	271	junction_1	17.5	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTTTCATATCACTGTG	NA	False	NA	-2	True	AATAAA	-23	NA	54715205	54711615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_54711997_54712780_54712889_54714619
ENSMUSG00000036617.18_106	chr2	+	2736	3	ISM	ENSMUSG00000036617.18	ENSMUST00000114608.3	6635	16	69259	192	-881	-3	3prime_fragment	FALSE	canonical	3	106	junction_1	60.5	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGCCGTCTGGACTTCC	NA	False	NA	19	True	AATAAA	-11	NA	20811383	20815332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_20812185_20812712_20812836_20813520
ENSMUSG00000036617.18_107	chr2	+	1294	1	ISM	ENSMUSG00000036617.18	ENSMUST00000114627.8	7413	22	519316	13	1775	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCCGTCTGGACTTCCT	NA	False	NA	20	True	AATAAA	-12	NA	20814039	20815333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_20814000_20815300
ENSMUSG00000036617.18_12	chr2	+	5563	18	ISM	ENSMUSG00000036617.18	ENSMUST00000114614.8	5898	19	9585	3	-159	-3	3prime_fragment	FALSE	canonical	3	21	junction_12	53.6124114122788	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGCCGTCTGGACTTCC	4637	False	NA	19	True	AATAAA	-11	NA	20524442	20815332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790279_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20812712_20812836_20813520
ENSMUSG00000036617.18_3	chr2	+	7282	20	NIC	ENSMUSG00000036617.18	novel	7197	21	NA	NA	-169	-4	combination_of_known_junctions	FALSE	canonical	3	91	junction_16	40.2682831275283	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGCCGTCTGGACTTC	4627	False	NA	18	True	AATAAA	-10	NA	20524432	20815331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20810395_20810474_20810585_20812185_20812712_20812836_20813520
ENSMUSG00000036617.18_5	chr2	+	3247	12	ISM	ENSMUSG00000036617.18	ENSMUST00000045555.11	5931	19	9573	24823	-171	2	internal_fragment	FALSE	canonical	3	169	junction_6	15.8979181546796	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTGGGGTTTTGTTGTT	4625	False	NA	28	True	AATATA	-29	NA	20524430	20790512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854
ENSMUSG00000036617.18_6	chr2	+	5597	18	ISM	ENSMUSG00000036617.18	ENSMUST00000045555.11	5931	19	9580	7	-164	-7	3prime_fragment	FALSE	canonical	3	69	junction_16	36.8251268212062	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATGTGGCCGTCTGGAC	4632	False	NA	15	True	AATAAA	-7	NA	20524437	20815328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20812712_20812836_20813520
ENSMUSG00000036620.15_0	chr11	+	2403	15	FSM	ENSMUSG00000036620.15	ENSMUST00000041725.14	2429	15	23	3	23	-3	multi-exon	FALSE	canonical	3	193	junction_14	11.6647471695966	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATGTGTCTCATAGGTG	NA	False	NA	10	True	AATAAA	-10	NA	50116184	50125927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_50116567_50121506_50121693_50121787_50121929_50122017_50122152_50122565_50122613_50122850_50122965_50123133_50123210_50123390_50123506_50123771_50123903_50124102_50124211_50124290_50124485_50124909_50124989_50125070_50125159_50125236_50125350_50125432
ENSMUSG00000036620.15_2	chr11	+	2509	14	NIC	ENSMUSG00000036620.15	novel	2429	15	NA	NA	6	-3	intron_retention	TRUE	canonical	3	193	junction_13	11.5957551915146	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATGTGTCTCATAGGTG	NA	False	NA	10	True	AATAAA	-10	NA	50116167	50125927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_50116567_50121506_50121693_50121787_50122152_50122565_50122613_50122850_50122965_50123133_50123210_50123390_50123506_50123771_50123903_50124102_50124211_50124290_50124485_50124909_50124989_50125070_50125159_50125236_50125350_50125432
ENSMUSG00000036622.16_0	chr4	+	3849	29	FSM	ENSMUSG00000036622.16	ENSMUST00000127833.3	3882	29	32	1	5	-1	multi-exon	FALSE	canonical	3	40	junction_19	21.6883068279021	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCGGCACTGGTCTTG	1434	False	NA	11	True	AATAAA	-16	NA	140714215	140734640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140733815_140734063_140734160_140734251
ENSMUSG00000036622.16_2	chr4	+	3923	29	FSM	ENSMUSG00000036622.16	ENSMUST00000037055.14	3956	29	32	1	5	-1	multi-exon	FALSE	canonical	3	40	junction_19	18.6368011510253	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCGGCACTGGTCTTG	1434	False	NA	11	True	AATAAA	-16	NA	140714215	140734640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140733815_140733989_140734160_140734251
ENSMUSG00000036622.16_3	chr4	+	4101	28	NIC	ENSMUSG00000036622.16	novel	3956	29	NA	NA	2	-1	intron_retention	FALSE	canonical	3	40	junction_19	18.4710502737861	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCGGCACTGGTCTTG	1431	False	NA	11	True	AATAAA	-16	NA	140714212	140734640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140734160_140734251
ENSMUSG00000036632.10_2	chr3	+	1091	10	FSM	ENSMUSG00000036632.10	ENSMUST00000044567.4	1471	10	21	359	1	-359	multi-exon	FALSE	canonical	3	432	junction_5	39.5777091521022	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCCTTTGTATATTCTT	NA	False	NA	20	True	AATAAA	-24	NA	54642980	54656857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_54643071_54646202_54646375_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
ENSMUSG00000036632.10_4	chr3	+	1443	10	FSM	ENSMUSG00000036632.10	ENSMUST00000141191.8	2972	10	1	1528	1	-5	multi-exon	FALSE	canonical	3	42	junction_2	150.752270011367	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTCAAGGTGTCCTCTT	NA	False	NA	13	True	AATAAA	-17	NA	54642980	54657211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_54643071_54646202_54646373_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
ENSMUSG00000036634.16_2	chr7	-	2436	12	NIC	ENSMUSG00000036634.16	novel	2419	12	NA	NA	-21	0	intron_retention	FALSE	canonical	0	0	junction_2	2.15130173930895	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCAGTCTAGACCCAT	6585	False	NA	NA	False	AATAAA	-13	NA	30614319	30598607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30599124_30599776_30599822_30600062_30600163_30600487_30600585_30601073_30601362_30606330_30606592_30607789_30608048_30608400_30608698_30610825_30611195_30611315_30611389_30612248_30612305_30614243
ENSMUSG00000036636.11_0	chr17	+	4034	25	FSM	ENSMUSG00000036636.11	ENSMUST00000040729.9	4071	25	30	7	30	-1	multi-exon	FALSE	canonical	3	111	junction_8	12.081896466293	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTCCAGTATTTTTAT	NA	False	NA	13	True	NA	NA	NA	25352394	25381071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
ENSMUSG00000036636.11_61	chr17	+	1168	1	ISM	ENSMUSG00000036636.11	ENSMUST00000162862.3	4237	25	27540	1	2276	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCCAGTATTTTTATT	9281	False	NA	14	True	NA	NA	NA	25379904	25381072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_25379900_25381100
ENSMUSG00000036636.11_7	chr17	+	4869	24	NIC	ENSMUSG00000036636.11	novel	4071	25	NA	NA	25	-1	intron_retention	FALSE	canonical	3	111	junction_7	12.1627277808041	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTCCAGTATTTTTAT	NA	False	NA	13	True	NA	NA	NA	25352389	25381071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
ENSMUSG00000036639.13_1	chr5	+	887	4	FSM	ENSMUSG00000036639.13	ENSMUST00000071881.10	952	4	63	2	14	-2	multi-exon	FALSE	canonical	3	19	junction_1	90.7450641449256	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGCTGTGTGACTACAG	NA	False	NA	8	True	NA	NA	NA	140317677	140323890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_140317711_140320209_140320375_140321067_140321214_140323347
ENSMUSG00000036639.13_10	chr5	+	636	3	ISM	ENSMUSG00000036639.13	ENSMUST00000110826.8	606	4	2058	-107	-120	-26	3prime_fragment	FALSE	canonical	3	203	junction_2	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCCCCACATACTGGTCCT	NA	False	NA	27	True	NA	NA	NA	140320207	140323670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_140320375_140321067_140321214_140323347
ENSMUSG00000036639.13_3	chr5	+	930	5	FSM	ENSMUSG00000036639.13	ENSMUST00000050205.12	954	5	22	2	22	-2	multi-exon	FALSE	canonical	3	93	junction_1	49.2461927462418	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGCTGTGTGACTACAG	NA	False	NA	8	True	NA	NA	NA	140317685	140323890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_140317711_140318177_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUSG00000036639.13_5	chr5	+	3302	3	FSM	ENSMUSG00000036639.13	ENSMUST00000110825.2	599	3	-477	-2226	-7	-19	multi-exon	FALSE	canonical	3	152	junction_1	33.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTGGTCCTGTTTTAG	NA	False	NA	34	True	NA	NA	NA	140317701	140323677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_140318229_140320209_140320375_140321067
ENSMUSG00000036639.13_7	chr5	+	907	4	FSM	ENSMUSG00000036639.13	ENSMUST00000110826.8	606	4	26	-327	-3	-2	multi-exon	FALSE	canonical	3	152	junction_1	28.5696031162882	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGCTGTGTGACTACAG	NA	False	NA	8	True	NA	NA	NA	140318175	140323890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUSG00000036644.16_0	chr11	+	4354	20	NIC	ENSMUSG00000036644.16	novel	4407	21	NA	NA	-17	-13	combination_of_known_splicesites	TRUE	canonical	3	18	junction_18	31.7647167454221	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAAAGCACACT	NA	False	NA	-6	True	AATAAA	-7	NA	50022205	50062844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50059522_50059630_50061523
ENSMUSG00000036644.16_2	chr11	+	4166	20	NIC	ENSMUSG00000036644.16	novel	4407	21	NA	NA	-9	-9	combination_of_known_splicesites	FALSE	canonical	3	5	junction_15	34.6020510816653	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAAGCACACTGTGT	NA	False	NA	-2	True	AATAAA	-11	NA	50022213	50062848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052872_50052939_50054651_50054724_50058995_50059053_50059522_50059630_50061523
ENSMUSG00000036644.16_3	chr11	+	4403	21	FSM	ENSMUSG00000036644.16	ENSMUST00000093138.13	4407	21	-9	13	-9	-13	multi-exon	FALSE	canonical	3	113	junction_18	14.0538251020852	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAAAGCACACT	NA	False	NA	-6	True	AATAAA	-7	NA	50022213	50062844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50058995_50059053_50059522_50059630_50061523
ENSMUSG00000036644.16_5	chr11	+	4454	22	FSM	ENSMUSG00000036644.16	ENSMUST00000101270.5	5213	22	-9	768	-9	-13	multi-exon	FALSE	canonical	3	13	junction_18	41.5114660552835	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAAAGCACACT	NA	False	NA	-6	True	AATAAA	-7	NA	50022213	50062844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50054988_50055040_50058995_50059053_50059522_50059630_50061523
ENSMUSG00000036646.14_0	chr2	+	3722	13	FSM	ENSMUSG00000036646.14	ENSMUST00000042390.5	3755	13	28	5	-5	-5	multi-exon	FALSE	canonical	3	302	junction_8	34.4394597647653	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGCTGTGTGCAGTGTT	3993	False	NA	28	True	ATTAAA	-16	NA	25222768	25242219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373
ENSMUSG00000036646.14_35	chr2	+	1339	1	ISM	ENSMUSG00000036646.14	ENSMUST00000042390.5	3755	13	18140	5	5872	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGCTGTGTGCAGTGTT	NA	False	NA	28	True	ATTAAA	-16	NA	25240880	25242219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_25240900_25242200
ENSMUSG00000036646.14_4	chr2	+	4066	12	NIC	ENSMUSG00000036646.14	novel	3755	13	NA	NA	-5	-5	intron_retention	FALSE	canonical	3	302	junction_8	32.9823393764572	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGCTGTGTGCAGTGTT	3993	False	NA	28	True	ATTAAA	-16	NA	25222768	25242219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238704_25239181_25239380_25239462_25239595_25240373
ENSMUSG00000036661.15_0	chr15	+	5258	23	FSM	ENSMUSG00000036661.15	ENSMUST00000043414.12	5299	23	21	20	21	-20	multi-exon	FALSE	canonical	2	4	junction_14	7.34678205825995	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGCTGGTTGCTTGA	NA	False	NA	NA	False	AATAAA	-12	NA	73384429	73444071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_73384697_73394078_73394356_73395287_73395404_73395987_73396122_73399764_73399877_73404667_73404788_73405109_73405329_73409138_73409261_73412541_73412698_73414568_73414666_73416206_73416311_73416794_73416995_73418969_73419492_73426905_73427166_73428196_73428368_73429430_73429561_73434173_73434282_73436345_73436486_73436864_73437023_73438881_73439016_73440270_73440375_73440456_73440595_73442602
ENSMUSG00000036661.15_10	chr15	+	2336	7	ISM	ENSMUSG00000036661.15	ENSMUST00000043414.12	5299	23	49680	20	-2622	-20	3prime_fragment	FALSE	canonical	2	4	junction_4	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGCTGGTTGCTTGA	NA	False	NA	NA	False	AATAAA	-12	NA	73434088	73444071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_73434282_73436345_73436486_73436864_73437023_73438881_73439016_73440270_73440375_73440456_73440595_73442602
ENSMUSG00000036661.15_11	chr15	+	2198	6	ISM	ENSMUSG00000036661.15	ENSMUST00000043414.12	5299	23	51882	20	-420	-20	3prime_fragment	FALSE	canonical	2	4	junction_3	4.35430821141545	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGCTGGTTGCTTGA	NA	False	NA	NA	False	AATAAA	-12	NA	73436290	73444071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_73436486_73436864_73437023_73438881_73439016_73440270_73440375_73440456_73440595_73442602
ENSMUSG00000036661.15_2	chr15	+	2739	13	ISM	ENSMUSG00000036661.15	ENSMUST00000173292.8	5172	24	-79	24152	33	-9765	5prime_fragment	FALSE	canonical	3	9	junction_4	5.63409758129512	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTATGTTGTATACAATA	NA	False	NA	NA	False	NA	NA	NA	73384441	73419796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_73384697_73394078_73394356_73395287_73395404_73395987_73396122_73399764_73399877_73404667_73404788_73405109_73405329_73409138_73409261_73412541_73412698_73414568_73414666_73416206_73416311_73416794_73416995_73418969
ENSMUSG00000036661.15_7	chr15	+	1741	7	ISM	ENSMUSG00000036661.15	ENSMUST00000173292.8	5172	24	20573	24152	9111	-9765	internal_fragment	FALSE	canonical	3	16	junction_4	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTATGTTGTATACAATA	NA	False	NA	NA	False	NA	NA	NA	73405093	73419796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_73405329_73409138_73409261_73412541_73412698_73414568_73414666_73416206_73416311_73416794_73416995_73418969
ENSMUSG00000036661.15_9	chr15	+	3211	11	ISM	ENSMUSG00000036661.15	ENSMUST00000043414.12	5299	23	34684	20	-10392	-20	3prime_fragment	FALSE	canonical	2	4	junction_2	3.69459064038223	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGCTGGTTGCTTGA	NA	False	NA	NA	False	AATAAA	-12	NA	73419092	73444071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_73419492_73426905_73427166_73428196_73428368_73429430_73429561_73434173_73434282_73436345_73436486_73436864_73437023_73438881_73439016_73440270_73440375_73440456_73440595_73442602
ENSMUSG00000036667.15_0	chr6	-	1759	1	Genic_Genomic	ENSMUSG00000036667.15	novel	NA	NA	NA	NA	23248	5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTTCACATTCAGTAAG	NA	False	NA	NA	False	AATAAA	-21	NA	42646689	42644930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_42644900_42646700
ENSMUSG00000036667.15_1	chr6	-	5214	9	FSM	ENSMUSG00000036667.15	ENSMUST00000045054.11	5257	9	24	19	7	-19	multi-exon	FALSE	canonical	1	2	junction_8	3.27633560552029	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAACTCAAATAAAACATCC	6097	False	NA	NA	False	NA	NA	NA	42686998	42644954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_42647258_42650286_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42686892
ENSMUSG00000036667.15_3	chr6	-	3281	9	FSM	ENSMUSG00000036667.15	ENSMUST00000121083.8	3342	9	45	16	17	-16	multi-exon	FALSE	canonical	1	2	junction_8	3.27633560552029	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAGAGGTAAAAAATTAG	NA	False	NA	NA	False	AATAAA	-20	NA	42669976	42646891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_42647258_42650286_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42669866
ENSMUSG00000036667.15_5	chr6	-	3613	8	FSM	ENSMUSG00000036667.15	ENSMUST00000045140.5	5256	8	25	1618	25	-1618	multi-exon	FALSE	canonical	1	2	junction_7	3.49927106111883	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACATTCTGGACCTAAAC	NA	False	NA	NA	False	AAAACA	-29	NA	42669968	42649580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42669866
ENSMUSG00000036672.6_0	chr8	-	1766	13	FSM	ENSMUSG00000036672.6	ENSMUST00000040776.6	1814	13	48	0	2	0	multi-exon	FALSE	canonical	3	157	junction_3	25.0593739391514	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTTAGCGATATT	NA	False	NA	NA	False	ATTAAA	-12	NA	106578638	106571308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
ENSMUSG00000036672.6_1	chr8	-	1825	14	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	76.1652672088405	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGTTAGCGATATTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	106578638	106571306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572796_106572854_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
ENSMUSG00000036672.6_19	chr8	-	1906	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	12	junction_10	64.1737053847596	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGTTAGCGATATTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	106578629	106571306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576182_106576257_106576556_106578502
ENSMUSG00000036672.6_27	chr8	-	2645	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	2	0	intron_retention	FALSE	canonical	3	191	junction_9	18.3816293489087	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTTAGCGATATT	NA	False	NA	NA	False	ATTAAA	-12	NA	106578638	106571308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_106571628_106571705_106571811_106571891_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
ENSMUSG00000036672.6_6	chr8	-	1733	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	63.6958163837578	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGTTAGCGATATTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	106578638	106571306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576402_106578502
ENSMUSG00000036676.15_0	chr10	-	5968	14	FSM	ENSMUSG00000036676.15	ENSMUST00000058154.15	5993	14	15	10	4	-10	multi-exon	FALSE	canonical	3	57	junction_8	14.4496677957759	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTTCAGCCTGATTGT	NA	False	NA	-9	True	ATTAAA	-13	NA	100323197	100279773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_100283606_100284685_100284913_100286100_100286271_100287243_100287348_100292909_100293022_100294776_100294898_100296821_100296971_100301882_100302136_100307190_100307364_100307776_100307893_100310236_100310337_100312418_100312638_100313666_100313885_100323023
ENSMUSG00000036676.15_2	chr10	-	3040	1	ISM	ENSMUSG00000036676.15	ENSMUST00000058154.15	5993	14	40399	10	40316	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTTCAGCCTGATTGT	NA	False	NA	-9	True	ATTAAA	-13	NA	100282813	100279773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_100279800_100282800
ENSMUSG00000036676.15_3	chr10	-	6052	15	NIC	ENSMUSG00000036676.15	novel	5993	14	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	18	junction_14	29.291288668079	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCTGATTGTCTTGTGA	NA	False	NA	-2	True	ATTAAA	-20	NA	100323199	100279766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_100283606_100284685_100284913_100286100_100286271_100287243_100287348_100292909_100293022_100294776_100294898_100296821_100296971_100301882_100302136_100307190_100307364_100307776_100307893_100310236_100310337_100312418_100312638_100313666_100313885_100320912_100320988_100323023
ENSMUSG00000036676.15_6	chr10	-	4496	6	ISM	ENSMUSG00000036676.15	ENSMUST00000058154.15	5993	14	28394	1	28311	-1	3prime_fragment	FALSE	canonical	3	93	junction_2	6.62117814289874	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGATTGTCTTGTGATG	NA	False	NA	0	True	ATTAAA	-22	NA	100294818	100279764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_100283606_100284685_100284913_100286100_100286271_100287243_100287348_100292909_100293022_100294776
ENSMUSG00000036678.9_0	chr15	-	1733	16	FSM	ENSMUSG00000036678.9	ENSMUST00000041208.9	1811	16	73	5	1	0	multi-exon	FALSE	canonical	3	447	junction_7	35.3844912669692	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTACCAGGATGTAACTCC	NA	False	NA	-10	True	AATAAA	-20	NA	102259121	102246691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
ENSMUSG00000036678.9_7	chr15	-	2134	15	ISM	ENSMUSG00000036678.9	ENSMUST00000041208.9	1811	16	87	5	15	0	intron_retention	FALSE	canonical	3	447	junction_7	34.6472014949053	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTACCAGGATGTAACTCC	NA	False	NA	-10	True	AATAAA	-20	NA	102259107	102246691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387
ENSMUSG00000036686.17_0	chr8	-	3409	29	FSM	ENSMUSG00000036686.17	ENSMUST00000040383.9	3471	29	50	12	11	-3	multi-exon	TRUE	canonical	3	61	junction_17	12.7601500215095	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTGCCTCAGCTTTGTC	NA	False	NA	-13	True	AATGAA	-12	NA	84874515	84859468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84859887_84859960_84860009_84860092_84860170_84860392_84860520_84860605_84860670_84861104_84861167_84861250_84861389_84861525_84861617_84861690_84861791_84862233_84862286_84862386_84862446_84862515_84862590_84863367_84863485_84863558_84863618_84863698_84863822_84865089_84865263_84865346_84865459_84865918_84866053_84866869_84866943_84867012_84867144_84867234_84867307_84867391_84867465_84867709_84867829_84869915_84870139_84870236_84870372_84870586_84870653_84870737_84870851_84872942_84873079_84874275
ENSMUSG00000036686.17_4	chr8	-	3416	29	NIC	ENSMUSG00000036686.17	novel	3471	29	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	2	8	junction_17	19.365542458033	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTGCCTCAGCTTTGTC	NA	False	NA	-13	True	AATGAA	-12	NA	84874525	84859468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_84859887_84859960_84860009_84860092_84860170_84860392_84860520_84860605_84860670_84861104_84861167_84861250_84861389_84861525_84861617_84861690_84861791_84862233_84862286_84862386_84862446_84862515_84862590_84863367_84863485_84863558_84863618_84863698_84863822_84865089_84865263_84865346_84865456_84865918_84866053_84866869_84866943_84867012_84867144_84867234_84867307_84867391_84867465_84867709_84867829_84869915_84870139_84870236_84870372_84870586_84870653_84870737_84870851_84872942_84873079_84874275
ENSMUSG00000036693.13_0	chr5	-	2654	18	FSM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	45	3	45	-3	multi-exon	FALSE	canonical	3	557	junction_10	61.2066102226557	1101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCAAGGCTGTGTGGTGT	NA	False	NA	-8	True	AATAAA	-13	NA	34817447	34795882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
ENSMUSG00000036698.12_0	chr15	-	4926	1	ISM	ENSMUSG00000036698.12	ENSMUST00000044113.12	13800	19	84151	15	13270	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	459	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACAGCTGCCTATTCCG	NA	False	NA	34	True	AATAAA	-20	NA	72972633	72967707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_72967700_72972600
ENSMUSG00000036698.12_1	chr15	-	3551	19	FSM	ENSMUSG00000036698.12	ENSMUST00000044113.12	13800	19	15	10234	15	1255	multi-exon	TRUE	canonical	3	61	junction_13	10.6510302057803	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATATATGTATCTGGT	4459	False	NA	18	True	GATAAA	-44	NA	73056769	72977926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_72978866_72979013_72979214_72980220_72980323_72983535_72983671_72985556_72985752_72988151_72988243_72991185_72991346_72992912_72993098_72995171_72995306_72995725_72995849_72995978_72996099_72997012_72997161_72998295_72998384_72998802_72998938_73000172_73000310_73002709_73002892_73009841_73009963_73018218_73018415_73056609
ENSMUSG00000036707.17_1	chr1	+	3782	9	FSM	ENSMUSG00000036707.17	ENSMUST00000113360.8	3805	9	15	8	15	-8	multi-exon	FALSE	canonical	3	335	junction_1	34.2579826463848	867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTGTCTTGTGATGTC	NA	False	NA	7	True	AATAAA	-8	NA	85721176	85779289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_85721543_85746077_85746235_85763043_85763209_85765006_85765126_85769918_85770088_85772313_85772374_85775130_85775197_85775997_85776142_85776753
ENSMUSG00000036707.17_28	chr1	+	1964	1	ISM	ENSMUSG00000036707.17	ENSMUST00000113360.8	3805	9	56166	6	6527	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTCTTGTGATGTCCT	NA	False	NA	9	True	AATAAA	-10	NA	85777327	85779291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_85777300_85779300
ENSMUSG00000036707.17_6	chr1	+	3906	10	NIC	ENSMUSG00000036707.17	novel	3805	9	NA	NA	8	-8	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	161.294072357845	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTGTCTTGTGATGTC	NA	False	NA	7	True	AATAAA	-8	NA	85721169	85779289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_85721543_85723077_85723195_85746077_85746235_85763043_85763209_85765006_85765126_85769918_85770088_85772313_85772374_85775130_85775197_85775997_85776142_85776753
ENSMUSG00000036712.16_0	chr8	+	4499	17	FSM	ENSMUSG00000036712.16	ENSMUST00000209559.2	4476	17	-20	-3	-5	3	multi-exon	FALSE	canonical	3	35	junction_1	10.7172466146861	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATAAATATTGCTGTTAT	NA	False	NA	11	True	TATAAA	-20	NA	89423682	89475086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_89423728_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
ENSMUSG00000036712.16_17	chr8	+	4446	16	FSM	ENSMUSG00000036712.16	ENSMUST00000109626.4	7945	16	3	3496	3	0	multi-exon	FALSE	canonical	3	38	junction_5	9.78888258292142	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAAGAGTCTATAAATAT	4620	False	NA	2	True	TATAAA	-11	NA	89431852	89475077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
ENSMUSG00000036712.16_18	chr8	+	3846	14	ISM	ENSMUSG00000036712.16	ENSMUST00000209206.2	4032	15	3005	-32	89	26	3prime_fragment	FALSE	canonical	3	18	junction_5	13.4771338234312	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGCACTTTACTCCTTG	4706	False	NA	34	True	TATAAA	-43	NA	89431938	89475109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
ENSMUSG00000036712.16_2	chr8	+	3946	15	NIC	ENSMUSG00000036712.16	novel	4476	17	NA	NA	-5	2	combination_of_known_junctions	TRUE	canonical	3	18	junction_6	14.0152977645347	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGTCTATAAATATTG	NA	False	NA	4	True	TATAAA	-13	NA	89423682	89475079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_89423728_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
ENSMUSG00000036712.16_21	chr8	+	3783	1	ISM	ENSMUSG00000036712.16	ENSMUST00000043526.15	8022	17	51131	4	13048	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTCTCCTTGATTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	89474786	89478569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_89474800_89478600
ENSMUSG00000036712.16_3	chr8	+	4657	18	FSM	ENSMUSG00000036712.16	ENSMUST00000211554.2	4638	18	8	-27	-5	27	multi-exon	FALSE	canonical	3	5	junction_1	16.8699483019167	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCACTTTACTCCTTGG	NA	False	NA	35	True	TATAAA	-44	NA	89423682	89475110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_89423728_89428932_89429067_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
ENSMUSG00000036712.16_8	chr8	+	4589	17	NNC	ENSMUSG00000036712.16	novel	4476	17	NA	NA	8	27	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	15.119833828452	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCACTTTACTCCTTGG	NA	False	NA	35	True	TATAAA	-44	NA	89423710	89475110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_89423822_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
ENSMUSG00000036718.18_1	chr5	-	3297	18	NNC	ENSMUSG00000036718.18	novel	3346	17	NA	NA	16	0	at_least_one_novel_splicesite	TRUE	canonical	1	5	junction_8	5.0540332997672	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGTTGCCTGTGTGTGTC	NA	False	NA	-4	True	AATAAA	-15	NA	139722075	139692450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_139692665_139692816_139692864_139694640_139694756_139695270_139695345_139695445_139695537_139695957_139696082_139696156_139696222_139696337_139696488_139697308_139697467_139698041_139698136_139698895_139699153_139701460_139701805_139701837_139702601_139703193_139703310_139703977_139704169_139704998_139705141_139707702_139707752_139721772
ENSMUSG00000036718.18_2	chr5	-	3331	17	FSM	ENSMUSG00000036718.18	ENSMUST00000044642.14	3346	17	16	-1	16	1	multi-exon	FALSE	canonical	1	5	junction_8	4.83476990145343	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTGCCTGTGTGTGTCA	NA	False	NA	-3	True	AATAAA	-16	NA	139722075	139692449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139692665_139692816_139692864_139694640_139694756_139695270_139695345_139695445_139695537_139695957_139696082_139696156_139696222_139696337_139696488_139697308_139697467_139698041_139698136_139698895_139699153_139701460_139702601_139703193_139703310_139703977_139704169_139704998_139705141_139707702_139707752_139721772
ENSMUSG00000036721.15_0	chr13	+	1920	4	FSM	ENSMUSG00000036721.15	ENSMUST00000225545.2	4405	4	23	2462	11	3	multi-exon	FALSE	canonical	3	44	junction_1	12.0277457017791	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTATACTGTCCTTTGT	NA	False	NA	11	True	CATAAA	-16	NA	21547012	21553997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_21547043_21547749_21548222_21550784_21550927_21552721
ENSMUSG00000036721.15_1	chr13	+	3718	3	ISM	ENSMUSG00000036721.15	ENSMUST00000225545.2	4405	4	20	2462	8	3	intron_retention	FALSE	canonical	3	44	junction_1	9.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTATACTGTCCTTTGT	NA	False	NA	11	True	CATAAA	-16	NA	21547009	21553997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_21547043_21547749_21548222_21550784
ENSMUSG00000036721.15_2	chr13	+	2210	4	NIC	ENSMUSG00000036721.15	novel	2270	5	NA	NA	23	2	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	22.9927524813074	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTATACTGTCCTTTG	NA	False	NA	10	True	CATAAA	-15	NA	21547024	21553996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_21547346_21547749_21548222_21550784_21550927_21552721
ENSMUSG00000036721.15_3	chr13	+	2382	4	NIC	ENSMUSG00000036721.15	novel	2270	5	NA	NA	44	0	intron_retention	FALSE	canonical	0	0	junction_1	32.3144274623924	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCTGTATACTGTCCTT	NA	False	NA	8	True	CATAAA	-13	NA	21547045	21553994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_21547541_21547749_21548222_21550784_21550927_21552721
ENSMUSG00000036721.15_7	chr13	+	1721	3	FSM	ENSMUSG00000036721.15	ENSMUST00000099720.3	2182	3	464	-3	464	3	multi-exon	FALSE	canonical	3	63	junction_1	5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTATACTGTCCTTTGT	NA	False	NA	11	True	CATAAA	-16	NA	21547918	21553997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_21548222_21550784_21550927_21552721
ENSMUSG00000036721.15_8	chr13	+	3672	1	ISM	ENSMUSG00000036721.15	ENSMUST00000225545.2	4405	4	5791	7	5326	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTCTAGTTTCTCATAA	NA	False	NA	1	True	NA	NA	NA	21552780	21556452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_21552800_21556500
ENSMUSG00000036733.17_0	chr7	-	1515	9	FSM	ENSMUSG00000036733.17	ENSMUST00000108141.2	1526	9	8	3	8	-1	multi-exon	TRUE	canonical	3	345	junction_5	209.790818435889	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCTGACTGGACTTAGAA	3792	False	NA	-15	True	AATAAA	-15	NA	30349561	30340426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345247_30346984_30347060_30347155_30347241_30349008_30349145_30349362
ENSMUSG00000036737.13_1	chr9	-	4616	18	FSM	ENSMUSG00000036737.13	ENSMUST00000040853.11	4647	18	18	13	18	-13	multi-exon	FALSE	canonical	3	230	junction_10	22.0306486733564	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATATATAAATGCTTTC	5590	False	NA	34	True	AATAAA	-16	NA	119151475	119067510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_119070283_119070776_119070842_119071785_119071855_119073721_119073775_119074607_119074673_119076047_119076195_119080254_119080291_119083828_119083952_119088267_119088334_119089115_119089165_119093815_119093950_119096208_119096311_119097745_119097856_119101994_119102051_119113611_119113754_119123480_119123590_119133870_119133984_119151070
ENSMUSG00000036737.13_2	chr9	-	3759	3	FSM	ENSMUSG00000036737.13	ENSMUST00000136902.2	780	3	-279	-2700	-279	-13	multi-exon	FALSE	canonical	3	280	junction_2	8	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATATATAAATGCTTTC	NA	False	NA	34	True	AATAAA	-16	NA	119072707	119067510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_119070283_119070776_119070842_119071785
ENSMUSG00000036737.13_5	chr9	-	4496	17	NIC	ENSMUSG00000036737.13	novel	4647	18	NA	NA	29	-13	combination_of_known_splicesites	FALSE	canonical	3	12	junction_15	69.1425158639748	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATATATAAATGCTTTC	5601	False	NA	34	True	AATAAA	-16	NA	119151464	119067510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_119070283_119070776_119070842_119071785_119071855_119073721_119073775_119074607_119074673_119076047_119076195_119080254_119080291_119083828_119083952_119088267_119088334_119089115_119089165_119093815_119093950_119096208_119096311_119097745_119097856_119101994_119102051_119113611_119113754_119133870_119133984_119151070
ENSMUSG00000036737.13_8	chr9	-	2018	1	ISM	ENSMUSG00000036737.13	ENSMUST00000040853.11	4647	18	81969	9	2904	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATAAATGCTTTCATTT	NA	False	NA	38	True	AATAAA	-20	NA	119069524	119067506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_119067500_119069500
ENSMUSG00000036743.5_1	chr18	+	1660	7	FSM	ENSMUSG00000036743.5	ENSMUST00000040860.3	1692	7	29	3	-9	-3	multi-exon	TRUE	canonical	3	86	junction_2	7.18795288428261	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTATAGAGTGTCTCCTT	NA	False	NA	7	True	NA	NA	NA	14839236	14895352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
ENSMUSG00000036743.5_10	chr18	+	2566	1	NIC	ENSMUSG00000036743.5	novel	1692	7	NA	NA	33184	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTATAGAGTGTCTCCTT	NA	False	NA	7	True	NA	NA	NA	14892786	14895352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_14892800_14895400
ENSMUSG00000036743.5_5	chr18	+	1541	6	NIC	ENSMUSG00000036743.5	novel	1692	7	NA	NA	-18	-4	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	33.7792835921664	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTATAGAGTGTCTCCT	NA	False	NA	6	True	NA	NA	NA	14839227	14895351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_14839390_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
ENSMUSG00000036748.17_0	chr19	-	1216	10	NIC	ENSMUSG00000036748.17	novel	1167	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_9	344.205723727706	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5872	False	NA	-8	True	AGTAAA	-13	NA	46327049	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46326958
ENSMUSG00000036748.17_1	chr19	-	1216	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	336.420298561116	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5862	False	NA	-8	True	AGTAAA	-13	NA	46327059	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
ENSMUSG00000036748.17_10	chr19	-	1082	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235485.2	1790	9	-26	734	-8	0	multi-exon	FALSE	canonical	3	133	junction_8	321.93700859019	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5836	False	NA	-8	True	AGTAAA	-13	NA	46327085	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321138_46327007
ENSMUSG00000036748.17_12	chr19	-	1190	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236061.2	1164	10	-28	2	8	0	multi-exon	FALSE	canonical	3	122	junction_9	336.647010794011	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5830	False	NA	-8	True	AGTAAA	-13	NA	46327091	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
ENSMUSG00000036748.17_14	chr19	-	1274	9	NIC	ENSMUSG00000036748.17	novel	999	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	413	junction_5	271.660605121538	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5849	False	NA	-8	True	AGTAAA	-13	NA	46327072	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751
ENSMUSG00000036748.17_16	chr19	-	1155	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	349.486642921081	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	2	True	NA	-8	True	AGTAAA	-13	NA	46327052	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
ENSMUSG00000036748.17_19	chr19	-	1120	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_9	365.48266750547	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5855	False	NA	-8	True	AGTAAA	-13	NA	46327066	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46327007
ENSMUSG00000036748.17_2	chr19	-	1076	9	FSM	ENSMUSG00000036748.17	ENSMUST00000051234.9	1833	9	23	734	1	0	multi-exon	FALSE	canonical	3	390	junction_8	253.325599525591	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5845	False	NA	-8	True	AGTAAA	-13	NA	46327076	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46327007
ENSMUSG00000036748.17_25	chr19	-	1022	9	NIC	ENSMUSG00000036748.17	novel	999	9	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	390	junction_8	277.077155319597	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5845	False	NA	-8	True	AGTAAA	-13	NA	46327076	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46327007
ENSMUSG00000036748.17_4	chr19	-	1016	9	FSM	ENSMUSG00000036748.17	ENSMUST00000236980.2	999	9	-17	0	4	0	multi-exon	FALSE	canonical	3	133	junction_8	339.490035752156	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5848	False	NA	-8	True	AGTAAA	-13	NA	46327073	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46327007
ENSMUSG00000036748.17_5	chr19	-	1304	9	ISM	ENSMUSG00000036748.17	ENSMUST00000236046.2	1167	10	-1	2	-1	0	intron_retention	FALSE	canonical	3	415	junction_8	247.19526694498	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5873	False	NA	-8	True	AGTAAA	-13	NA	46327048	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751
ENSMUSG00000036748.17_8	chr19	-	1111	10	NIC	ENSMUSG00000036748.17	novel	1164	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_9	349.700542086801	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5855	False	NA	-8	True	AGTAAA	-13	NA	46327066	46318984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
ENSMUSG00000036751.8_0	chr7	-	467	4	FSM	ENSMUSG00000036751.8	ENSMUST00000075738.6	618	4	38	113	1	0	multi-exon	FALSE	canonical	3	5624	junction_1	329.368419183679	976	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	False	NA	-4	True	AATAAA	-18	NA	30325538	30316398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30316588_30322839_30322941_30323924_30324039_30325475
ENSMUSG00000036752.5_0	chr2	-	1547	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	47	4	-1	-4	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	1346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTCGCCTGTCCAAT	NA	False	NA	-28	True	ATTAAA	-14	NA	25114667	25112175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
ENSMUSG00000036752.5_1	chr2	-	1428	3	ISM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	467	4	419	-4	3prime_fragment	FALSE	canonical	3	1343	junction_2	31.5	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTCGCCTGTCCAAT	NA	False	NA	-28	True	ATTAAA	-14	NA	25114247	25112175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25113381_25113945_25114057_25114135
ENSMUSG00000036752.5_3	chr2	-	1008	1	ISM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	1531	4	1483	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTCGCCTGTCCAAT	NA	False	NA	-28	True	ATTAAA	-14	NA	25113183	25112175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_25112200_25113200
ENSMUSG00000036764.13_0	chr10	+	1229	5	FSM	ENSMUSG00000036764.13	ENSMUST00000043317.7	3025	5	39	1757	31	-8	multi-exon	TRUE	canonical	3	25	junction_2	1.58113883008419	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTCATTTATGCATTTA	NA	False	NA	NA	False	AATAAA	-11	NA	63222380	63244598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_63222555_63231563_63231643_63233017_63233158_63242780_63242986_63243967
ENSMUSG00000036766.13_0	chr1	-	3256	13	FSM	ENSMUSG00000036766.13	ENSMUST00000049126.13	3632	13	371	5	169	-5	multi-exon	FALSE	canonical	1	6	junction_12	3.60169713082905	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACTCACTTGTCTCATTC	NA	False	NA	-4	True	AATAAA	-14	NA	84673571	84347564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_84348597_84361505_84361753_84373335_84373468_84383659_84383774_84396369_84396493_84423115_84423341_84454065_84454180_84472451_84472606_84512572_84512719_84558376_84558544_84560724_84560820_84563033_84563343_84673173
ENSMUSG00000036766.13_1	chr1	-	2922	13	NIC	ENSMUSG00000036766.13	novel	3632	13	NA	NA	-3	-5	combination_of_known_junctions	FALSE	canonical	1	3	junction_12	4.19242040936842	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACTCACTTGTCTCATTC	NA	False	NA	-4	True	AATAAA	-14	NA	84618209	84347564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_84348597_84361505_84361753_84373335_84373468_84383659_84383774_84396369_84396493_84423115_84423341_84454065_84454180_84472451_84472606_84512572_84512719_84558376_84558544_84560724_84560820_84563033_84563343_84618145
ENSMUSG00000036768.7_0	chr9	+	4819	35	FSM	ENSMUSG00000036768.7	ENSMUST00000040717.7	4858	35	31	8	0	0	multi-exon	FALSE	canonical	3	157	junction_12	27.7337969778696	386	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAATGTGTATAAATA	NA	False	NA	0	True	AATAAA	-10	NA	122780141	122847790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122804713_122804894_122806904_122807115_122808534_122808661_122808804_122808928_122813864_122813989_122815209_122815287_122815506_122815717_122816910_122817089_122820150_122820293_122820925_122821068_122822907_122823106_122824780_122824889_122825355_122825462_122826846_122827013_122828239_122828391_122828579_122828666_122830109_122830180_122831099_122831187_122832634_122832740_122833635_122833759_122836378_122836526_122838381_122838484_122838824_122838990_122840592_122840703_122843004_122843078_122843533_122843572_122846309_122846476_122846651_122846784_122847132
ENSMUSG00000036769.15_0	chrX	+	4155	20	FSM	ENSMUSG00000036769.15	ENSMUST00000035766.13	4167	20	12	0	12	0	multi-exon	FALSE	canonical	3	33	junction_8	9.86248944541599	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAATAAATGATTGTC	NA	False	NA	NA	False	ATTAAA	-12	NA	23559301	23672229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
ENSMUSG00000036769.15_12	chrX	+	4131	19	NIC	ENSMUSG00000036769.15	novel	4167	20	NA	NA	2	0	intron_retention	FALSE	canonical	0	0	junction_1	16.0524795207916	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAATAAATGATTGTC	NA	False	NA	NA	False	ATTAAA	-12	NA	23559291	23672229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_23559779_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
ENSMUSG00000036769.15_19	chrX	+	3361	17	ISM	ENSMUSG00000036769.15	ENSMUST00000101670.3	4002	21	63552	35	-20171	0	3prime_fragment	FALSE	canonical	3	33	junction_5	10.158124826955	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAATAAATGATTGTC	NA	False	NA	NA	False	ATTAAA	-12	NA	23622886	23672229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
ENSMUSG00000036769.15_2	chrX	+	3989	21	FSM	ENSMUSG00000036769.15	ENSMUST00000101670.3	4002	21	-22	35	-3	0	multi-exon	FALSE	canonical	3	24	junction_1	11.664475984801	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAATAAATGATTGTC	NA	False	NA	NA	False	ATTAAA	-12	NA	23559312	23672229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_23559509_23559663_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
ENSMUSG00000036775.14_0	chr17	-	1997	9	FSM	ENSMUSG00000036775.14	ENSMUST00000040907.8	2224	9	196	31	79	-12	multi-exon	FALSE	canonical	3	125	junction_7	27.3849867628232	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAGAAAAAAAATTGACTGA	NA	False	NA	-35	True	NA	NA	NA	26309115	26300215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
ENSMUSG00000036775.14_1	chr17	-	1916	9	NIC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	27	-12	combination_of_known_junctions	FALSE	canonical	3	6	junction_8	57.9427249531811	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAGAAAAAAAATTGACTGA	NA	False	NA	-35	True	NA	NA	NA	26309167	26300215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26309070
ENSMUSG00000036775.14_3	chr17	-	1909	8	NIC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	96	-14	combination_of_known_splicesites	FALSE	canonical	3	10	junction_7	60.1518486661814	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGACAGAAAAAAAATTGACT	NA	False	NA	-37	True	NA	NA	NA	26309098	26300217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26308937
ENSMUSG00000036775.14_7	chr17	-	2265	12	Fusion	ENSMUSG00000036775.14_ENSMUSG00000024177.10	novel	2224	9	NA	NA	-5	-29	multi-exon	FALSE	canonical	2	3	junction_8	95.7316324656874	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAACGTTTCTAGACA	NA	False	NA	-52	True	NA	NA	NA	26314452	26300232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ENSMUSG00000036777.9_0	chr9	-	4620	25	NIC	ENSMUSG00000036777.9	novel	4605	24	NA	NA	35	-4	combination_of_known_junctions	FALSE	canonical	3	159	junction_4	113.4790423627	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCATCAGTTATTTAAG	7218	False	NA	-7	True	AATAAA	-16	NA	22300449	22243311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22260542_22260597_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
ENSMUSG00000036777.9_2	chr9	-	4560	24	FSM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	41	4	41	-4	multi-exon	FALSE	canonical	3	398	junction_4	55.8021416884086	776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCATCAGTTATTTAAG	7224	False	NA	-7	True	AATAAA	-16	NA	22300443	22243311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
ENSMUSG00000036779.13_0	chr8	+	4530	13	NNC	ENSMUSG00000036779.13	novel	4624	13	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	35.4717219141608	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTTAGTTTGCCTG	NA	False	NA	8	True	AGTAAA	-9	NA	88925830	88986344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_88925942_88926656_88927131_88969868_88969993_88972225_88972273_88972992_88973114_88974136_88974245_88975732_88975862_88977267_88977482_88978582_88978710_88978809_88978914_88979013_88979202_88981736_88981902_88983726
ENSMUSG00000036779.13_1	chr8	+	4629	13	FSM	ENSMUSG00000036779.13	ENSMUST00000119033.8	4624	13	-11	6	-11	0	multi-exon	FALSE	canonical	3	15	junction_1	34.7235110871902	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTTAGTTTGCCTG	NA	False	NA	8	True	AGTAAA	-9	NA	88925829	88986344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_88925942_88926558_88927131_88969868_88969993_88972225_88972273_88972992_88973114_88974136_88974245_88975732_88975862_88977267_88977482_88978582_88978710_88978809_88978914_88979013_88979202_88981736_88981902_88983726
ENSMUSG00000036779.13_19	chr8	+	4756	12	NIC	ENSMUSG00000036779.13	novel	4624	13	NA	NA	337	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_9	35.9023008540061	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTTAGTTTGCCTG	NA	False	NA	8	True	AGTAAA	-9	NA	88926178	88986344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_88927131_88969868_88969993_88972225_88972273_88972992_88973114_88974136_88974245_88975732_88975862_88977267_88977482_88978582_88978710_88978809_88978914_88979154_88979202_88981736_88981902_88983726
ENSMUSG00000036779.13_35	chr8	+	2084	1	ISM	ENSMUSG00000036779.13	ENSMUST00000066748.10	4489	12	58420	0	5661	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTTAGTTTGCCTG	NA	False	NA	8	True	AGTAAA	-9	NA	88984260	88986344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_88984300_88986300
ENSMUSG00000036779.13_5	chr8	+	4537	13	NNC	ENSMUSG00000036779.13	novel	4624	13	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	33.4849676057116	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTTAGTTTGCCTG	NA	False	NA	8	True	AGTAAA	-9	NA	88925826	88986344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_88925942_88926653_88927131_88969868_88969993_88972225_88972273_88972992_88973114_88974136_88974245_88975732_88975862_88977267_88977482_88978582_88978710_88978809_88978914_88979013_88979202_88981736_88981902_88983726
ENSMUSG00000036779.13_6	chr8	+	4898	12	ISM	ENSMUSG00000036779.13	ENSMUST00000118952.8	4597	13	336	6	336	0	3prime_fragment	FALSE	canonical	3	98	junction_5	15.7967461865615	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTTAGTTTGCCTG	NA	False	NA	8	True	AGTAAA	-9	NA	88926177	88986344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_88927131_88969868_88969993_88972225_88972273_88972992_88973114_88974136_88974245_88975732_88975862_88977267_88977482_88978582_88978710_88978809_88978914_88979013_88979202_88981736_88981902_88983726
ENSMUSG00000036781.14_0	chr9	+	482	4	FSM	ENSMUSG00000036781.14	ENSMUST00000040917.14	499	4	16	1	11	0	multi-exon	FALSE	canonical	3	10808	junction_3	618.277355956765	1633	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAAGTTCCTCCCTCTGCT	NA	False	NA	29	True	AATAAA	-13	NA	66853383	66856793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66856610
ENSMUSG00000036782.14_0	chrX	-	3220	8	ISM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	3387	15	3358	0	3prime_fragment	TRUE	canonical	3	772	junction_6	153.107671864193	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23227934	23085524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
ENSMUSG00000036782.14_1	chrX	-	3216	9	FSM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	20	15	-9	0	multi-exon	FALSE	canonical	3	241	junction_8	283.721694623446	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23231301	23085524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
ENSMUSG00000036782.14_2	chrX	-	3308	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3725	-2	at_least_one_novel_splicesite	FALSE	canonical	3	222	junction_7	307.654590309938	318	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTGCTCTGTGCCATG	NA	False	NA	-25	True	AATAAA	-12	NA	23185143	23085526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
ENSMUSG00000036782.14_4	chrX	-	3282	10	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	389.833899418461	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23231301	23085524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732_23227824_23231194
ENSMUSG00000036782.14_5	chrX	-	3284	9	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3358	-2	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	366.28779668452	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTGCTCTGTGCCATG	NA	False	NA	-25	True	AATAAA	-12	NA	23227934	23085526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732
ENSMUSG00000036792.13_10	chr2	+	4809	4	ISM	ENSMUSG00000036792.13	ENSMUST00000047413.10	8543	10	-348	59575	-348	-443	5prime_fragment	FALSE	canonical	2	8	junction_3	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATATAGCCTTGGTCA	3131	False	NA	NA	False	NA	NA	NA	49135632	49150127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49136219_49140150_49140254_49141254_49141436_49146188
ENSMUSG00000036792.13_11	chr2	+	2312	1	ISM	ENSMUSG00000036792.13	ENSMUST00000112745.8	6037	11	307142	1597	89	-1597	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTAGAATTTTTTATCAT	NA	False	NA	NA	False	AATAAA	-20	NA	49146661	49148973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49146700_49149000
ENSMUSG00000036792.13_2	chr2	+	4977	11	NIC	ENSMUSG00000036792.13	novel	713	8	NA	NA	65	-1606	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	3.49857113690718	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTGATTTCTAGAATT	6291	False	NA	NA	False	AATAAA	-11	NA	48839599	49148964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_48840188_48908265_48908338_48976601_48976665_48989728_48989822_49008663_49008818_49059920_49060026_49121683_49121861_49135553_49136219_49140150_49140254_49141254_49141436_49146188
ENSMUSG00000036792.13_4	chr2	+	3271	2	FSM	ENSMUSG00000036792.13	ENSMUST00000148796.2	608	2	-363	-2300	77	2300	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACCCAGTCTTATATTTT	6303	False	NA	NA	False	AATAAA	-17	NA	48839611	48846379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_48840188_48843684
ENSMUSG00000036810.17_0	chr8	+	1729	6	FSM	ENSMUSG00000036810.17	ENSMUST00000095214.10	1731	6	3	-1	3	1	multi-exon	FALSE	canonical	3	147	junction_2	26.3256528883901	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTAGTGGTTAGAGATTT	NA	False	NA	10	True	AATAAA	-12	NA	88845399	88861735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88860415
ENSMUSG00000036810.17_16	chr8	+	1164	1	ISM	ENSMUSG00000036810.17	ENSMUST00000127490.8	1643	5	15158	2	15138	2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAGTGGTTAGAGATTTT	NA	False	NA	11	True	AATAAA	-13	NA	88860572	88861736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_88860600_88861700
ENSMUSG00000036810.17_19	chr8	+	1345	6	NIC	ENSMUSG00000036810.17	novel	728	6	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	2	10	junction_5	70.6070817977914	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCTTTGTGTGGTTTA	NA	False	NA	15	True	NA	NA	NA	88845413	88858313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88857363
ENSMUSG00000036810.17_4	chr8	+	1656	5	FSM	ENSMUSG00000036810.17	ENSMUST00000127490.8	1643	5	-17	4	1	0	multi-exon	FALSE	canonical	3	5	junction_2	72.261244799685	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTAGTGGTTAGAGATT	NA	False	NA	9	True	AATAAA	-11	NA	88845397	88861734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_88845498_88846407_88846480_88856322_88856433_88856974_88857030_88860415
ENSMUSG00000036817.15_0	chr5	+	3939	22	FSM	ENSMUSG00000036817.15	ENSMUST00000110884.9	3955	22	9	7	0	-7	multi-exon	FALSE	canonical	3	224	junction_8	208.642464528521	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGCATGTGCGATTTC	NA	False	NA	13	True	AATAAA	-14	NA	139186423	139235543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUSG00000036817.15_10	chr5	+	3858	22	FSM	ENSMUSG00000036817.15	ENSMUST00000078690.13	2608	22	-11	-1239	0	-7	multi-exon	FALSE	canonical	3	224	junction_6	196.102233969428	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGCATGTGCGATTTC	NA	False	NA	13	True	AATAAA	-14	NA	139186423	139235543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUSG00000036817.15_14	chr5	+	3582	19	NIC	ENSMUSG00000036817.15	novel	3714	20	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	54	junction_6	224.162701328001	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGCATGTGCGATTTC	NA	False	NA	13	True	AATAAA	-14	NA	139186423	139235543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUSG00000036817.15_15	chr5	+	3855	22	NIC	ENSMUSG00000036817.15	novel	2608	22	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	224	junction_6	222.683764466375	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGCATGTGCGATTTC	NA	False	NA	13	True	AATAAA	-14	NA	139186423	139235543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224585_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUSG00000036817.15_23	chr5	+	3681	20	FSM	ENSMUSG00000036817.15	ENSMUST00000110883.9	3714	20	26	7	0	-7	multi-exon	FALSE	canonical	3	84	junction_6	213.143404315789	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGCATGTGCGATTTC	NA	False	NA	13	True	AATAAA	-14	NA	139186423	139235543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUSG00000036817.15_27	chr5	+	3936	22	NIC	ENSMUSG00000036817.15	novel	3955	22	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	224	junction_8	233.254943100303	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGCATGTGCGATTTC	NA	False	NA	13	True	AATAAA	-14	NA	139186423	139235543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224585_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUSG00000036817.15_3	chr5	+	4046	23	NIC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	3	247	junction_16	206.64914170786	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGCATGTGCGATTTC	NA	False	NA	13	True	AATAAA	-14	NA	139186424	139235543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224585_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUSG00000036817.15_5	chr5	+	4050	23	FSM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	32	52	0	-7	multi-exon	FALSE	canonical	3	426	junction_7	179.419817953258	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGCATGTGCGATTTC	NA	False	NA	13	True	AATAAA	-14	NA	139186423	139235543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUSG00000036817.15_8	chr5	+	3747	21	NIC	ENSMUSG00000036817.15	novel	3955	22	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	224	junction_6	225.20792614826	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGCATGTGCGATTTC	NA	False	NA	13	True	AATAAA	-14	NA	139186423	139235543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUSG00000036819.15_0	chr11	+	1854	6	FSM	ENSMUSG00000036819.15	ENSMUST00000147163.8	4359	6	42	2463	-34	-2	multi-exon	FALSE	canonical	3	27	junction_3	10.3614670775909	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGGAGTTCCTTTTTTA	9523	False	NA	13	True	NA	NA	NA	59340912	59346930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344703_59344886_59345758_59345906_59346132
ENSMUSG00000036819.15_1	chr11	+	1915	6	FSM	ENSMUSG00000036819.15	ENSMUST00000045279.13	4315	6	29	2371	29	-4	multi-exon	FALSE	canonical	0	0	junction_3	19.0326036053925	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGGGGGAGTTCCTTTTT	9510	False	NA	11	True	NA	NA	NA	59340899	59346928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344653_59344886_59345758_59345906_59346132
ENSMUSG00000036819.15_2	chr11	+	1977	6	FSM	ENSMUSG00000036819.15	ENSMUST00000108777.10	4351	6	44	2330	-32	37	multi-exon	FALSE	canonical	3	15	junction_3	13.8506317545446	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAGTACCCTGTAGCTG	9525	False	NA	52	True	NA	NA	NA	59340914	59346969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344617_59344886_59345758_59345906_59346132
ENSMUSG00000036820.13_2	chr17	-	1439	11	FSM	ENSMUSG00000036820.13	ENSMUST00000040735.12	1496	11	57	0	-16	0	multi-exon	FALSE	canonical	3	306	junction_8	20.5156038175824	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382683	24374806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
ENSMUSG00000036820.13_4	chr17	-	1513	10	NIC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	-10	0	intron_retention	TRUE	canonical	3	306	junction_8	20.5804653872442	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382677	24374806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382307_24382555
ENSMUSG00000036822.7_0	chr4	-	3817	3	FSM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	24	15	24	-15	multi-exon	FALSE	canonical	3	214	junction_1	19	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTCAGACAATTTTC	-13	True	NA	-15	True	AATAAA	-13	NA	40269826	40259615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_40263082_40268303_40268502_40269673
ENSMUSG00000036822.7_1	chr4	-	2296	1	ISM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	7939	15	7939	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTCAGACAATTTTC	7902	False	NA	-15	True	AATAAA	-13	NA	40261911	40259615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_40259600_40261900
ENSMUSG00000036822.7_2	chr4	-	3684	2	ISM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	1329	15	1329	-15	3prime_fragment	FALSE	canonical	3	214	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTCAGACAATTTTC	-17	True	NA	-15	True	AATAAA	-13	NA	40268521	40259615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_40263082_40268303
ENSMUSG00000036825.13_0	chr3	+	3406	14	FSM	ENSMUSG00000036825.13	ENSMUST00000039021.11	3410	14	3	1	3	-1	multi-exon	FALSE	canonical	3	67	junction_10	37.3226774028969	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAAGTGAAGCCTTGTG	NA	False	NA	10	True	ATTAAA	-12	NA	146110421	146145887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_146110540_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138730_146138902_146142297_146142413_146142930_146143097_146144410
ENSMUSG00000036825.13_1	chr3	+	3409	14	FSM	ENSMUSG00000036825.13	ENSMUST00000106153.9	3446	14	25	12	3	-1	multi-exon	FALSE	canonical	3	150	junction_1	20.2423190195674	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAAGTGAAGCCTTGTG	NA	False	NA	10	True	ATTAAA	-12	NA	146110421	146145887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_146110540_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138727_146138902_146142297_146142413_146142930_146143097_146144410
ENSMUSG00000036825.13_2	chr3	+	3550	14	NIC	ENSMUSG00000036825.13	novel	3446	14	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	45.0928037135147	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAAGTGAAGCCTTGTG	NA	False	NA	10	True	ATTAAA	-12	NA	146110431	146145887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_146110691_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138727_146138902_146142297_146142413_146142930_146143097_146144410
ENSMUSG00000036825.13_5	chr3	+	3541	15	NIC	ENSMUSG00000036825.13	novel	3446	14	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	66.5729613557446	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGAAGCCTTGTGTTG	NA	False	NA	13	True	ATTAAA	-15	NA	146110396	146145890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_146110540_146120450_146120555_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138727_146138902_146142297_146142413_146142930_146143097_146144410
ENSMUSG00000036825.13_9	chr3	+	3558	14	FSM	ENSMUSG00000036825.13	ENSMUST00000106151.8	3232	14	26	-352	4	1	multi-exon	FALSE	canonical	3	35	junction_1	53.8853703345785	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGTGAAGCCTTGTGTT	NA	False	NA	12	True	ATTAAA	-14	NA	146110422	146145889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_146110691_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138730_146138902_146142297_146142413_146142930_146143097_146144410
ENSMUSG00000036833.17_0	chr2	+	5485	36	NIC	ENSMUSG00000036833.17	novel	4574	35	NA	NA	-817	-2	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	10.0369114690095	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTGGCTATTTTACTC	NA	False	NA	8	True	AATAAA	-11	NA	24865227	24944067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24866326_24868137_24868234_24870045_24870121_24870214_24870303_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289_24885419_24886168_24886250_24887238_24887363_24888633_24888772_24892626_24892728_24892900_24893045_24900725_24900804_24901517_24901724_24905161_24905294_24906518_24906643_24909415_24909530_24911953_24912024_24919518_24919669_24928848_24928913_24929614_24929784_24930957_24931141_24932100_24932220_24937619_24937777_24940010_24940128_24940269_24940340_24940866_24940984_24941612_24941762_24942043_24942197_24942319_24942431_24942564_24942650_24943406_24943511_24943682
ENSMUSG00000036833.17_1	chr2	+	4547	35	FSM	ENSMUSG00000036833.17	ENSMUST00000045295.14	4574	35	25	2	-15	-2	multi-exon	FALSE	canonical	3	15	junction_1	7.94602248652754	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTGGCTATTTTACTC	NA	False	NA	8	True	AATAAA	-11	NA	24866069	24944067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_24866326_24870045_24870121_24870214_24870303_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289_24885419_24886168_24886250_24887238_24887363_24888633_24888772_24892626_24892728_24892900_24893045_24900725_24900804_24901517_24901724_24905161_24905294_24906518_24906643_24909415_24909530_24911953_24912024_24919518_24919669_24928848_24928913_24929614_24929784_24930957_24931141_24932100_24932220_24937619_24937777_24940010_24940128_24940269_24940340_24940866_24940984_24941612_24941762_24942043_24942197_24942319_24942431_24942564_24942650_24943406_24943511_24943682
ENSMUSG00000036833.17_12	chr2	+	4462	35	NIC	ENSMUSG00000036833.17	novel	4574	35	NA	NA	-20	4	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	8.92141779661339	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTATTTTACTCTGGTGT	NA	False	NA	14	True	AATAAA	-17	NA	24866064	24944073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24866230_24870045_24870121_24870214_24870303_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289_24885419_24886168_24886250_24887238_24887363_24888633_24888772_24892626_24892728_24892900_24893045_24900725_24900804_24901517_24901724_24905161_24905294_24906518_24906643_24909415_24909530_24911953_24912024_24919518_24919669_24928848_24928913_24929614_24929784_24930957_24931141_24932100_24932220_24937619_24937777_24940010_24940128_24940269_24940340_24940866_24940984_24941612_24941762_24942043_24942197_24942319_24942431_24942564_24942650_24943406_24943511_24943682
ENSMUSG00000036833.17_8	chr2	+	4389	33	NIC	ENSMUSG00000036833.17	novel	4574	35	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	3	junction_1	9.26266025502393	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGCTATTTTACTCTG	NA	False	NA	10	True	AATAAA	-13	NA	24866066	24944069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_24866326_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289_24885419_24886168_24886250_24887238_24887363_24888633_24888772_24892626_24892728_24892900_24893045_24900725_24900804_24901517_24901724_24905161_24905294_24906518_24906643_24909415_24909530_24911953_24912024_24919518_24919669_24928848_24928913_24929614_24929784_24930957_24931141_24932100_24932220_24937619_24937777_24940010_24940128_24940269_24940340_24940866_24940984_24941612_24941762_24942043_24942197_24942319_24942431_24942564_24942650_24943406_24943511_24943682
ENSMUSG00000036834.17_0	chr3	-	6552	24	NIC	ENSMUSG00000036834.17	novel	6010	23	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	6.17666809319226	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGATGATTTTGTTTATA	NA	False	NA	NA	False	ATTAAA	-15	NA	63806853	63603658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_63606902_63609204_63609560_63611554_63611635_63611937_63612085_63615137_63615223_63616941_63617067_63618384_63618493_63618588_63618769_63623404_63623503_63626608_63626704_63628593_63628666_63630170_63630333_63639037_63639146_63648043_63648216_63651899_63652021_63660548_63660753_63662672_63662767_63674877_63675049_63681061_63681192_63688732_63688977_63691411_63691559_63778076_63778196_63793348_63793435_63806647
ENSMUSG00000036834.17_10	chr3	-	6455	23	NIC	ENSMUSG00000036834.17	novel	6010	23	NA	NA	18	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	5.86575014754195	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTTGATGATTTTGTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	63806845	63603661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_63606902_63609204_63609560_63611554_63611635_63611937_63612085_63615137_63615223_63616941_63617067_63618384_63618493_63618588_63618769_63623404_63623503_63626608_63626704_63628593_63628666_63630170_63630333_63639037_63639146_63648043_63648216_63651899_63652021_63660548_63660753_63662672_63662767_63674877_63675049_63681061_63681192_63688732_63688977_63691411_63691559_63778076_63778196_63806647
ENSMUSG00000036834.17_11	chr3	-	3550	2	ISM	ENSMUSG00000036834.17	ENSMUST00000159982.9	5099	14	38775	1	-47	0	3prime_fragment	FALSE	canonical	3	19	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGATGATTTTGTTTATA	NA	False	NA	NA	False	ATTAAA	-15	NA	63609511	63603658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_63606902_63609204
ENSMUSG00000036834.17_3	chr3	-	2352	1	ISM	ENSMUSG00000036834.17	ENSMUST00000160638.10	6271	24	152404	2	3456	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGATTTTGTTTATAAA	NA	False	NA	NA	False	ATTAAA	-17	NA	63606008	63603656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_63603700_63606000
ENSMUSG00000036834.17_5	chr3	-	6538	24	NIC	ENSMUSG00000036834.17	novel	6010	23	NA	NA	18	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	6.36299557326629	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTTGATGATTTTGTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	63806845	63603661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_63606902_63609204_63609560_63611554_63611635_63611937_63612085_63615137_63615223_63616941_63617067_63618384_63618493_63618588_63618769_63623404_63623503_63626608_63626701_63628593_63628666_63630170_63630333_63639037_63639146_63648043_63648216_63651899_63652021_63660548_63660753_63662672_63662767_63674877_63675049_63681061_63681192_63688732_63688977_63691411_63691559_63778076_63778196_63793348_63793435_63806647
ENSMUSG00000036834.17_8	chr3	-	6452	23	FSM	ENSMUSG00000036834.17	ENSMUST00000177143.8	6010	23	48	-490	18	-3	multi-exon	FALSE	canonical	0	0	junction_19	6.0897217295868	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTTGATGATTTTGTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	63806845	63603661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_63606902_63609204_63609560_63611554_63611635_63611937_63612085_63615137_63615223_63616941_63617067_63618384_63618493_63618588_63618769_63623404_63623503_63626608_63626701_63628593_63628666_63630170_63630333_63639037_63639146_63648043_63648216_63651899_63652021_63660548_63660753_63662672_63662767_63674877_63675049_63681061_63681192_63688732_63688977_63691411_63691559_63778076_63778196_63806647
ENSMUSG00000036835.8_0	chr7	-	647	4	FSM	ENSMUSG00000036835.8	ENSMUST00000043898.8	708	4	58	3	58	-3	multi-exon	FALSE	canonical	3	560	junction_3	125.517595048131	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTGAGTTCTTGGGAT	1348	False	NA	-8	True	AATAAA	-14	NA	30262608	30261292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262476
ENSMUSG00000036835.8_1	chr7	-	586	4	NIC	ENSMUSG00000036835.8	novel	708	4	NA	NA	-49	-3	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	381.68660792156	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTGAGTTCTTGGGAT	1358	False	NA	-8	True	AATAAA	-14	NA	30262598	30261292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30261560_30261748_30261854_30262220_30262313_30262476
ENSMUSG00000036835.8_2	chr7	-	485	3	FSM	ENSMUSG00000036835.8	ENSMUST00000207747.2	669	3	179	5	23	-3	multi-exon	FALSE	canonical	3	780	junction_1	38	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTGAGTTCTTGGGAT	1623	False	NA	-8	True	AATAAA	-14	NA	30262333	30261292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30261560_30261748_30261854_30262220
ENSMUSG00000036840.6_0	chr8	-	2114	2	FSM	ENSMUSG00000036840.6	ENSMUST00000045296.6	1968	2	-84	-62	-84	62	multi-exon	FALSE	canonical	3	375	junction_1	0	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAAAAAAATTTAATGT	NA	False	NA	NA	False	ATTAAA	-13	NA	87472646	87450572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_87452485_87472444
ENSMUSG00000036840.6_2	chr8	-	1583	1	Genic_Genomic	ENSMUSG00000036840.6	novel	NA	NA	NA	NA	20407	62	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAAAAAAATTTAATGT	NA	False	NA	NA	False	ATTAAA	-13	NA	87452155	87450572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_87450600_87452200
ENSMUSG00000036845.13_0	chr7	-	980	9	FSM	ENSMUSG00000036845.13	ENSMUST00000043975.11	998	9	8	10	1	-6	multi-exon	FALSE	canonical	3	222	junction_2	22.8363744933385	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCAGTTGACAAATCTCA	4893	False	NA	-16	True	NA	NA	NA	30259063	30254875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866
ENSMUSG00000036845.13_1	chr7	-	1182	8	NIC	ENSMUSG00000036845.13	novel	998	9	NA	NA	17	2	intron_retention	FALSE	canonical	3	222	junction_2	24.3922035051517	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTCAAGTGCATTTATT	4909	False	NA	-4	True	NA	NA	NA	30259047	30254863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257384_30258866
ENSMUSG00000036845.13_4	chr7	-	1094	9	FSM	ENSMUSG00000036845.13	ENSMUST00000108164.8	1312	9	206	12	7	-12	multi-exon	FALSE	canonical	3	52	junction_8	74.6976196073208	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACATAAGGCAGTTGACAA	4899	False	NA	-22	True	AATAAA	-44	NA	30259057	30254881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257510_30258866
ENSMUSG00000036850.5_0	chr2	-	699	2	FSM	ENSMUSG00000036850.5	ENSMUST00000045604.4	776	2	74	3	-35	-3	multi-exon	FALSE	canonical	3	317	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTATGTGTTTTGAATCA	NA	False	NA	-6	True	ATTAAA	-18	NA	24865036	24864131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_24864694_24864899
ENSMUSG00000036850.5_2	chr2	-	912	1	NIC	ENSMUSG00000036850.5	novel	776	2	NA	NA	-42	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTATGTGTTTTGAATCA	NA	False	NA	-6	True	ATTAAA	-18	NA	24865043	24864131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_24864100_24865000
ENSMUSG00000036853.6_1	chr3	+	2751	13	NIC	ENSMUSG00000036853.6	novel	2991	12	NA	NA	32	-274	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	2.08166599946613	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGATACCTGCTTATT	NA	False	NA	NA	False	AATAAA	-34	NA	145823236	145847287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_145823390_145827545_145827776_145830499_145830668_145833857_145834012_145834637_145834723_145834850_145834948_145836901_145837002_145839404_145839518_145839594_145839745_145843012_145843115_145843201_145843325_145845125_145845333_145846218
ENSMUSG00000036854.15_0	chr7	+	2087	3	FSM	ENSMUSG00000036854.15_ENSMUSG00000106236.3	ENSMUST00000044048.8	1363	3	-728	4	16	0	multi-exon	FALSE	canonical	3	14	junction_1	10.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTGCCTTATGTCTGGG	NA	False	NA	8	True	AATAAA	-16	NA	30251964	30254864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30252958_30253686_30253810_30253893
ENSMUSG00000036854.15_1	chr7	+	1278	3	FSM	ENSMUSG00000036854.15	ENSMUST00000123355.8	1298	3	18	2	18	-2	multi-exon	FALSE	canonical	3	18	junction_1	8.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAACTGCCTTATGTCTG	NA	False	NA	6	True	AATAAA	-14	NA	30251966	30254862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30252153_30253686_30253810_30253893
ENSMUSG00000036854.15_4	chr7	+	2902	1	FSM	ENSMUSG00000106236.3	ENSMUST00000199248.3	77	1	-297	-2528	-297	2528	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTGTCAACTGCCTTAT	NA	False	NA	1	True	AATAAA	-9	NA	30251955	30254857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30252000_30254900
ENSMUSG00000036854.15_6	chr7	+	2807	2	NIC	ENSMUSG00000036854.15	novel	1980	3	NA	NA	18	-7	intron_retention	FALSE	canonical	3	35	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTGTCAACTGCCTTAT	NA	False	NA	1	True	AATAAA	-9	NA	30251966	30254857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30253810_30253893
ENSMUSG00000036858.9_0	chr17	-	175	1	ISM	ENSMUSG00000036858.9	ENSMUST00000041012.9	1283	4	7847	28	7847	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAACAAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	47066791	47066616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_47066600_47066800
ENSMUSG00000036860.15_0	chr11	+	671	4	FSM	ENSMUSG00000036860.15	ENSMUST00000045697.12	940	4	20	249	7	-3	multi-exon	FALSE	canonical	3	484	junction_1	41.3467720088952	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCACCTGTCATTGTCTT	NA	False	NA	6	True	NA	NA	NA	59093337	59096711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59093486_59094997_59095082_59095381_59095584_59096474
ENSMUSG00000036860.15_1	chr11	+	693	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	23	2	7	-2	multi-exon	FALSE	canonical	3	42	junction_2	235.799820940465	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACCTGTCATTGTCTTC	NA	False	NA	7	True	NA	NA	NA	59093337	59096712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59093486_59094997_59095082_59095360_59095584_59096474
ENSMUSG00000036860.15_2	chr11	+	588	3	NIC	ENSMUSG00000036860.15	novel	940	4	NA	NA	7	-2	combination_of_known_splicesites	FALSE	canonical	3	65	junction_1	260	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACCTGTCATTGTCTTC	NA	False	NA	7	True	NA	NA	NA	59093337	59096712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_59093486_59095381_59095584_59096474
ENSMUSG00000036860.15_3	chr11	+	2479	2	NIC	ENSMUSG00000036860.15	novel	729	4	NA	NA	12	-2	intron_retention	FALSE	canonical	3	585	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACCTGTCATTGTCTTC	NA	False	NA	7	True	NA	NA	NA	59093342	59096712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_59095584_59096474
ENSMUSG00000036860.15_4	chr11	+	486	2	NIC	ENSMUSG00000036860.15	novel	940	4	NA	NA	14	-9	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTAGGTCAGACTTTTG	NA	False	NA	3	True	ATTAAA	-17	NA	59093344	59096819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_59093486_59096474
ENSMUSG00000036863.13_0	chr3	+	5511	7	FSM	ENSMUSG00000036863.13	ENSMUST00000212479.2	3810	7	-285	-1416	-18	-5	multi-exon	FALSE	canonical	3	37	junction_1	19.8445346520284	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACATGCTATTGTAATT	NA	False	NA	0	True	ATTAAA	-11	NA	145693606	145727470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_145694925_145704217_145704866_145707077_145708169_145712770_145712898_145720012_145720195_145721350_145721583_145725557
ENSMUSG00000036863.13_1	chr3	+	5512	7	FSM	ENSMUSG00000036863.13	ENSMUST00000039517.11	5495	7	-25	8	-25	-8	multi-exon	FALSE	canonical	3	28	junction_1	22.9685775692696	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGTGACATGCTATTGTA	NA	False	NA	-3	True	ATTAAA	-8	NA	145693599	145727467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_145694925_145704220_145704866_145707077_145708169_145712770_145712898_145720012_145720195_145721350_145721583_145725557
ENSMUSG00000036863.13_11	chr3	+	3165	5	ISM	ENSMUSG00000036863.13	ENSMUST00000200546.2	4712	7	13045	10	8027	-10	3prime_fragment	FALSE	canonical	3	76	junction_3	8.67107259801231	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACAGTGACATGCTATTG	NA	False	NA	-5	True	ATTAAA	-6	NA	145707452	145727465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_145708169_145712770_145712898_145720012_145720195_145721350_145721583_145725557
ENSMUSG00000036863.13_14	chr3	+	1572	1	ISM	ENSMUSG00000036863.13	ENSMUST00000039517.11	5495	7	32274	5	26473	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACATGCTATTGTAATT	NA	False	NA	0	True	ATTAAA	-11	NA	145725898	145727470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_145725900_145727500
ENSMUSG00000036863.13_9	chr3	+	3824	6	ISM	ENSMUSG00000036863.13	ENSMUST00000200546.2	4712	7	10179	5	5161	-5	3prime_fragment	FALSE	canonical	3	76	junction_4	8.50881895447306	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACATGCTATTGTAATT	NA	False	NA	0	True	ATTAAA	-11	NA	145704586	145727470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_145704866_145707077_145708169_145712770_145712898_145720012_145720195_145721350_145721583_145725557
ENSMUSG00000036864.17_0	chr7	-	2425	11	NNC	ENSMUSG00000036864.17	novel	2465	12	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	17.3551145199333	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATTTTTCCAGTTTACT	NA	False	NA	-9	True	AATAAA	-13	NA	30251729	30238561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240525_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30251632
ENSMUSG00000036864.17_17	chr7	-	2499	12	FSM	ENSMUSG00000036864.17	ENSMUST00000215288.2	2465	12	-40	6	-8	-6	multi-exon	FALSE	canonical	3	27	junction_11	10.5595517059866	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAACATTTTTCCAGTTT	NA	False	NA	-12	True	AATAAA	-10	NA	30251732	30238564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30250182_30250260_30251632
ENSMUSG00000036864.17_3	chr7	-	1006	3	ISM	ENSMUSG00000036864.17	ENSMUST00000215288.2	2465	12	11875	-1	9273	1	3prime_fragment	FALSE	canonical	3	54	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCCAGTTTACTGTTC	3700	False	NA	-5	True	AATAAA	-17	NA	30239817	30238557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30239008_30239173_30239256_30239343
ENSMUSG00000036864.17_5	chr7	-	2423	11	NIC	ENSMUSG00000036864.17	novel	2465	12	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	7.82304288624318	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTTTTCCAGTTTACTG	NA	False	NA	-8	True	AATAAA	-14	NA	30251729	30238560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30251632
ENSMUSG00000036864.17_6	chr7	-	2419	11	NIC	ENSMUSG00000036864.17	novel	2465	12	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	4	junction_7	16.4805946494658	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTTTTCCAGTTTACTG	NA	False	NA	-8	True	AATAAA	-14	NA	30251722	30238560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245654_30245727_30245853_30248465_30248634_30249031_30249129_30251632
ENSMUSG00000036864.17_8	chr7	-	2493	12	NNC	ENSMUSG00000036864.17	novel	2465	12	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	17.5178775271964	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATTTTTCCAGTTTACT	NA	False	NA	-9	True	AATAAA	-13	NA	30251720	30238561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240525_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30250182_30250260_30251632
ENSMUSG00000036864.17_9	chr7	-	2488	12	FSM	ENSMUSG00000036864.17	ENSMUST00000108165.8	2466	12	-24	2	0	-2	multi-exon	TRUE	canonical	3	10	junction_1	15.6395345622021	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTTTTCCAGTTTACTG	NA	False	NA	-8	True	AATAAA	-14	NA	30251721	30238560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30239004_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30250182_30250260_30251632
ENSMUSG00000036867.8_0	chr9	-	2767	4	FSM	ENSMUSG00000036867.8	ENSMUST00000041029.6	2971	4	38	166	11	-166	multi-exon	FALSE	canonical	3	34	junction_3	8.65383665716478	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCTTTCCTTTTTTAAAG	NA	False	NA	2	True	AATACA	-22	NA	63929303	63860523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_63861339_63914812_63914891_63919496_63919554_63927486
ENSMUSG00000036867.8_1	chr9	-	2735	5	NNC	ENSMUSG00000036867.8	novel	2971	4	NA	NA	11	-114	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	16.7779617355625	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTGGTGTATGGCTTTT	NA	False	NA	54	True	NA	NA	NA	63929303	63860471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_63861339_63914812_63914891_63919496_63919554_63927486_63928830_63928913
ENSMUSG00000036867.8_4	chr9	-	2485	2	NIC	ENSMUSG00000036867.8	novel	2971	4	NA	NA	33	-291	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTATGGAGTCATTTTTA	NA	False	NA	NA	False	NA	NA	NA	63929281	63860648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_63861339_63927486
ENSMUSG00000036872.17_2	chr8	-	4302	26	ISM	ENSMUSG00000036872.17	ENSMUST00000080115.10	4511	29	6090	-259	6090	1	3prime_fragment	FALSE	canonical	0	0	junction_3	0.708801805866774	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACCCTGAAATGTTGC	NA	False	NA	NA	False	ATTAAA	-16	NA	87287129	87231210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_87231934_87232042_87232208_87233451_87233566_87234526_87234606_87235709_87235870_87236316_87236507_87238902_87238993_87243935_87244123_87251318_87251457_87253891_87254119_87254844_87255043_87257145_87257250_87258152_87258243_87261151_87261221_87261316_87261393_87261502_87261638_87264951_87265156_87266654_87266728_87267968_87268094_87270460_87270533_87275158_87275438_87277156_87277265_87279900_87280050_87284225_87284374_87284779_87284954_87286904
ENSMUSG00000036873.14_0	chr3	+	968	3	FSM	ENSMUSG00000036873.14	ENSMUST00000039571.14	1547	3	25	554	-3	33	multi-exon	FALSE	canonical	3	242	junction_2	10.5	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTATTACTGAATG	NA	False	NA	23	True	AATAAA	-13	NA	145643793	145650030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_145644084_145644652_145644852_145649551
ENSMUSG00000036873.14_1	chr3	+	1008	3	FSM	ENSMUSG00000036873.14	ENSMUST00000190472.2	724	3	-251	-33	-8	33	multi-exon	FALSE	canonical	3	74	junction_2	94.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTATTACTGAATG	NA	False	NA	23	True	AATAAA	-13	NA	145643788	145650030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_145644084_145644652_145644852_145649516
ENSMUSG00000036873.14_2	chr3	+	1119	4	FSM	ENSMUSG00000036873.14	ENSMUST00000152783.2	514	4	-140	-465	8	33	multi-exon	FALSE	canonical	3	74	junction_3	20.0388511535855	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTATTACTGAATG	NA	False	NA	23	True	AATAAA	-13	NA	145643804	145650030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649516
ENSMUSG00000036873.14_3	chr3	+	1091	4	FSM	ENSMUSG00000036873.14	ENSMUST00000134575.8	1644	4	1	552	1	33	multi-exon	FALSE	canonical	3	101	junction_2	61.937244225282	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTATTACTGAATG	NA	False	NA	23	True	AATAAA	-13	NA	145643797	145650030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649551
ENSMUSG00000036875.16_1	chr10	+	4105	21	FSM	ENSMUSG00000036875.16	ENSMUST00000131422.8	4122	21	11	6	11	0	multi-exon	FALSE	canonical	0	0	junction_20	65.9729300546823	568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTTCACTGAGTCATT	NA	False	NA	53	True	AATAAA	-14	NA	62782815	62809958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_62782949_62784961_62785145_62786513_62786698_62789962_62790109_62791092_62791225_62792708_62792929_62793831_62793950_62794674_62794838_62794953_62795149_62795990_62796222_62797199_62797317_62797392_62797503_62798174_62798285_62799583_62799809_62800678_62800873_62802195_62802286_62802378_62802584_62803431_62803522_62805554_62805738_62807622_62807770_62809029
ENSMUSG00000036879.16_0	chr8	+	4592	32	NIC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	21.9062423691205	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGAAGCAATGTCTGCTT	NA	False	NA	5	True	NA	NA	NA	86567634	86787267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_86567733_86569649_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
ENSMUSG00000036879.16_1	chr8	+	4602	32	FSM	ENSMUSG00000036879.16	ENSMUST00000053771.14	5351	32	11	738	-3	-3	multi-exon	FALSE	canonical	3	66	junction_1	17.4946996581545	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGAAGCAATGTCTGCTT	NA	False	NA	5	True	NA	NA	NA	86567641	86787267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_86567733_86569632_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
ENSMUSG00000036879.16_3	chr8	+	4577	32	NNC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	23.8918391755081	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGAAGCAATGTCTGCTT	NA	False	NA	5	True	NA	NA	NA	86567644	86787267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_86567733_86569654_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
ENSMUSG00000036879.16_4	chr8	+	4563	32	NIC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	24.5815764788433	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGAAGCAATGTCTGCTT	NA	False	NA	5	True	NA	NA	NA	86567617	86787267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_86567687_86569649_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
ENSMUSG00000036879.16_7	chr8	+	4490	31	NIC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	24.2166379903478	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGAAGCAATGTCTGCTT	NA	False	NA	5	True	NA	NA	NA	86567644	86787267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_86567733_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
ENSMUSG00000036880.11_0	chr18	+	1513	10	FSM	ENSMUSG00000036880.11	ENSMUST00000041053.11	1516	10	2	1	2	-1	multi-exon	FALSE	canonical	3	191	junction_8	17.7325814376939	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAACCTTTTCTTGTTGG	NA	False	NA	12	True	AATAAA	-16	NA	74912269	74939278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74931559_74932115_74932246_74934367_74934439_74937071_74937227_74938925
ENSMUSG00000036880.11_1	chr18	+	1498	10	NNC	ENSMUSG00000036880.11	novel	1516	10	NA	NA	16	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	71.3854084754712	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAACCTTTTCTTGTTGG	NA	False	NA	12	True	AATAAA	-16	NA	74912283	74939278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74931559_74932116_74932246_74934367_74934439_74937071_74937227_74938925
ENSMUSG00000036880.11_3	chr18	+	2079	9	NIC	ENSMUSG00000036880.11	novel	1516	10	NA	NA	-7	-1	intron_retention	FALSE	canonical	3	191	junction_7	16.7779617355625	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAACCTTTTCTTGTTGG	NA	False	NA	12	True	AATAAA	-16	NA	74912260	74939278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74932246_74934367_74934439_74937071_74937227_74938925
ENSMUSG00000036882.8_4	chr7	-	4400	22	FSM	ENSMUSG00000036882.8	ENSMUST00000207860.2	4396	22	-6	2	-3	-2	multi-exon	FALSE	canonical	0	0	junction_17	2.7823545062841	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGCTGGAGCTAGTGAA	9077	False	NA	NA	False	AATAAA	-14	NA	30234440	30221652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30223272_30223368_30224014_30225379_30225455_30225538_30225685_30225771_30225926_30226566_30226713_30227704_30227813_30227894_30227978_30228078_30228224_30229140_30229244_30229319_30229473_30229560_30229621_30229700_30229768_30229849_30229928_30230010_30230134_30230948_30231042_30231503_30231642_30231744_30231826_30232184_30232270_30232359_30232458_30233527_30233638_30234350
ENSMUSG00000036882.8_5	chr7	-	4290	21	FSM	ENSMUSG00000036882.8	ENSMUST00000207858.2	4337	21	45	2	-3	-2	multi-exon	FALSE	canonical	0	0	junction_17	2.5588083163848	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGCTGGAGCTAGTGAA	9077	False	NA	NA	False	AATAAA	-14	NA	30234440	30221652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30223272_30223368_30224014_30225379_30225455_30225538_30225685_30225771_30225926_30226566_30226713_30227704_30227813_30227894_30227978_30228078_30228224_30229140_30229244_30229319_30229473_30229560_30229621_30229700_30229768_30229849_30229928_30230010_30230134_30230948_30231042_30231503_30231642_30231744_30231826_30232184_30232270_30232359_30232458_30234350
ENSMUSG00000036882.8_7	chr7	-	2670	5	ISM	ENSMUSG00000036882.8	ENSMUST00000044338.5	4280	21	7652	-1	2217	1	3prime_fragment	FALSE	canonical	1	2	junction_1	1.78535710713571	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTGGAGCTAGTGAATGA	6242	False	NA	NA	False	AATAAA	-17	NA	30225953	30221649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30223272_30223368_30224014_30225379_30225455_30225538_30225685_30225771
ENSMUSG00000036885.15_0	chr3	+	4928	14	FSM	ENSMUSG00000036885.15	ENSMUST00000079300.13	5638	14	619	91	-36	-91	multi-exon	FALSE	canonical	2	8	junction_11	5.33715346421589	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCTGGTGTAATTT	NA	False	NA	NA	False	TATAAA	-15	NA	62246383	62369551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_62247995_62248764_62248805_62252566_62252713_62285008_62285066_62288251_62288413_62326969_62327123_62330921_62331052_62334009_62334085_62336301_62336392_62339908_62340064_62355513_62355724_62365793_62365862_62367030_62367136_62367624
ENSMUSG00000036885.15_2	chr3	+	3274	12	ISM	ENSMUSG00000036885.15	ENSMUST00000079300.13	5638	14	6799	97	4042	-97	3prime_fragment	FALSE	canonical	2	8	junction_9	5.75821368076841	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTCTTTCTGTGCTGGTG	NA	False	NA	NA	False	TATAAA	-9	NA	62252563	62369545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_62252713_62285008_62285066_62288251_62288413_62326969_62327123_62330921_62331052_62334009_62334085_62336301_62336392_62339908_62340064_62355513_62355724_62365793_62365862_62367030_62367136_62367624
ENSMUSG00000036885.15_3	chr3	+	2018	3	ISM	ENSMUSG00000036885.15	ENSMUST00000079300.13	5638	14	120074	128	31238	-128	3prime_fragment	FALSE	canonical	2	13	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGCTTGTGAATTTAT	NA	False	NA	NA	False	AATAAA	-23	NA	62365838	62369514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_62365862_62367030_62367136_62367624
ENSMUSG00000036890.14_1	chr2	-	2515	11	NIC	ENSMUSG00000036890.14	novel	2564	11	NA	NA	-3	-7	combination_of_known_junctions	FALSE	canonical	3	29	junction_10	9.30644937664198	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAGCATATTCATTTGCG	NA	False	NA	-13	True	AATAAA	-18	NA	44817251	44454433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_44455547_44460430_44460523_44461224_44461296_44465454_44465600_44481892_44482003_44525013_44525329_44642058_44642233_44646279_44646448_44715362_44715556_44750302_44750339_44817153
ENSMUSG00000036890.14_12	chr2	-	2448	11	NIC	ENSMUSG00000036890.14	novel	2564	11	NA	NA	31	-1	combination_of_known_junctions	TRUE	canonical	0	0	junction_10	16.2061716639063	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATTTGCGTCTAAGTGT	NA	False	NA	-4	True	AATAAA	-27	NA	44817638	44454424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_44455547_44460430_44460523_44461224_44461296_44465454_44465600_44481892_44482003_44525013_44525329_44642058_44642233_44646279_44646448_44715362_44715556_44750302_44750339_44817616
ENSMUSG00000036890.14_3	chr2	-	446	1	ISM	ENSMUSG00000036890.14	ENSMUST00000112810.8	2564	11	296750	15	6475	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAATTAGCATATTCAT	NA	False	NA	-18	True	AATAAA	-13	NA	44454884	44454438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_44454400_44454900
ENSMUSG00000036890.14_5	chr2	-	2418	10	ISM	ENSMUSG00000036890.14	ENSMUST00000112810.8	2564	11	1294	11	1294	-8	3prime_fragment	FALSE	canonical	3	41	junction_7	7.69960717292018	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTAGCATATTCATTTGC	NA	False	NA	-14	True	AATAAA	-17	NA	44750340	44454434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_44455547_44460430_44460523_44461224_44461296_44465454_44465600_44481892_44482003_44525013_44525329_44642058_44642233_44646279_44646448_44715362_44715556_44750302
ENSMUSG00000036890.14_8	chr2	-	2472	10	NIC	ENSMUSG00000036890.14	novel	2564	11	NA	NA	-2	-13	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	17.0619785227596	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTAATTAGCATATTCA	NA	False	NA	-19	True	AATAAA	-12	NA	44817250	44454439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_44455547_44460430_44460523_44461224_44461296_44465454_44465600_44481892_44482003_44525013_44525329_44642058_44642233_44646279_44646448_44715362_44715556_44817153
ENSMUSG00000036893.18_0	chr2	-	5091	27	FSM	ENSMUSG00000036893.18	ENSMUST00000147147.8	5953	27	7	855	0	12	multi-exon	FALSE	canonical	3	34	junction_23	50.1601134592868	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTTTAAATGGAGTTTTC	9597	False	NA	-13	True	AATAAA	-7	NA	24809619	24680794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753942_24767466_24767639_24774157_24774715_24777014_24777082_24809565
ENSMUSG00000036893.18_10	chr2	-	5061	27	FSM	ENSMUSG00000036893.18	ENSMUST00000091348.11	4615	27	-14	-432	-3	12	multi-exon	FALSE	canonical	3	73	junction_26	45.6963867643122	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTTTAAATGGAGTTTTC	9603	False	NA	-13	True	AATAAA	-7	NA	24809613	24680794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777079_24809565
ENSMUSG00000036893.18_29	chr2	-	5062	27	NIC	ENSMUSG00000036893.18	novel	5953	27	NA	NA	-4	12	combination_of_known_junctions	FALSE	canonical	3	18	junction_23	52.763749995707	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTTTAAATGGAGTTTTC	9602	False	NA	-13	True	AATAAA	-7	NA	24809614	24680794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753918_24767466_24767639_24774157_24774715_24777014_24777082_24809565
ENSMUSG00000036893.18_43	chr2	-	5075	27	NIC	ENSMUSG00000036893.18	novel	4680	27	NA	NA	1	12	combination_of_known_junctions	FALSE	canonical	3	45	junction_25	50.78478782624	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTTTAAATGGAGTTTTC	9598	False	NA	-13	True	AATAAA	-7	NA	24809618	24680794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777008_24777082_24809565
ENSMUSG00000036893.18_7	chr2	-	5067	27	FSM	ENSMUSG00000036893.18	ENSMUST00000102938.10	4680	27	-13	-374	3	12	multi-exon	FALSE	canonical	3	154	junction_23	33.3131324390158	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTTTAAATGGAGTTTTC	9600	False	NA	-13	True	AATAAA	-7	NA	24809616	24680794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777082_24809565
ENSMUSG00000036893.18_8	chr2	-	5079	27	NIC	ENSMUSG00000036893.18	novel	5953	27	NA	NA	0	12	combination_of_known_junctions	TRUE	canonical	3	34	junction_23	58.7975666686458	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTTTAAATGGAGTTTTC	9606	False	NA	-13	True	AATAAA	-7	NA	24809610	24680794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753942_24767466_24767639_24774157_24774715_24777014_24777079_24809565
ENSMUSG00000036894.4_0	chr3	+	2442	1	FSM	ENSMUSG00000036894.4	ENSMUST00000049064.4	6793	1	2956	1395	2956	-1395	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCCAAACTATTTGTGG	NA	False	NA	60	True	AATACA	-17	NA	61272014	61274456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_61272000_61274500
ENSMUSG00000036898.17_1	chr5	+	3256	5	FSM	ENSMUSG00000036898.17	ENSMUST00000085856.12	5312	5	20	2036	9	-2036	multi-exon	FALSE	canonical	3	42	junction_4	9.52299847737046	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTTTGGAATGACGGC	NA	False	NA	NA	False	NA	NA	NA	138439749	138456920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138439892_138443013_138443141_138445776_138445870_138453241_138453352_138454136
ENSMUSG00000036898.17_11	chr5	+	5367	2	ISM	ENSMUSG00000036898.17	ENSMUST00000085856.12	5312	5	11039	2036	10967	-2036	3prime_fragment	FALSE	canonical	3	42	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTTTGGAATGACGGC	9268	False	NA	NA	False	NA	NA	NA	138450768	138456920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_138453352_138454136
ENSMUSG00000036898.17_12	chr5	+	2203	1	ISM	ENSMUSG00000036898.17	ENSMUST00000085856.12	5312	5	14988	2036	14916	-2036	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTTTGGAATGACGGC	NA	False	NA	NA	False	NA	NA	NA	138454717	138456920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_138454700_138456900
ENSMUSG00000036898.17_2	chr5	+	3249	5	FSM	ENSMUSG00000036898.17	ENSMUST00000100524.3	869	5	-53	-2327	8	-2040	multi-exon	FALSE	canonical	3	9	junction_4	23.7276210354093	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATGAACTTTGGAATGA	NA	False	NA	NA	False	NA	NA	NA	138439748	138456916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138439892_138443013_138443141_138445776_138445870_138453241_138453352_138454140
ENSMUSG00000036898.17_8	chr5	+	3114	4	ISM	ENSMUSG00000036898.17	ENSMUST00000085856.12	5312	5	3285	2035	3213	-2035	3prime_fragment	FALSE	canonical	3	42	junction_3	10.8423039781937	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTTGGAATGACGGCT	1514	False	NA	NA	False	NA	NA	NA	138443014	138456921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_138443141_138445776_138445870_138453241_138453352_138454136
ENSMUSG00000036902.12_0	chr8	-	5631	9	FSM	ENSMUSG00000036902.12	ENSMUST00000209479.2	4936	9	-176	-519	-6	-130	multi-exon	FALSE	canonical	1	1	junction_4	5.7649262788001	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTGCCTCAATTCTGAA	NA	False	NA	-1	True	AATAAA	-20	NA	86427559	86363346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_86367746_86369041_86369156_86374344_86374574_86389807_86389936_86390036_86390061_86396162_86396412_86397018_86397160_86400702_86400760_86427269
ENSMUSG00000036902.12_1	chr8	-	5663	9	FSM	ENSMUSG00000036902.12	ENSMUST00000216286.2	2932	9	-19	-2712	-19	-132	multi-exon	FALSE	canonical	2	4	junction_3	4.55521678957215	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCTTGCCTCAATTCTG	NA	False	NA	-3	True	AATAAA	-18	NA	86427572	86363348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_86367746_86369041_86369156_86374344_86374574_86389807_86389936_86390015_86390061_86396162_86396412_86397018_86397160_86400702_86400760_86427269
ENSMUSG00000036902.12_5	chr8	-	2427	1	ISM	ENSMUSG00000036902.12	ENSMUST00000109686.4	5610	9	51829	130	51829	-130	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTGCCTCAATTCTGAA	NA	False	NA	-1	True	AATAAA	-20	NA	86365773	86363346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_86363300_86365800
ENSMUSG00000036904.7_0	chr18	+	3654	1	FSM	ENSMUSG00000036904.7	ENSMUST00000041080.7	5974	1	14	2306	14	-2306	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAATCAAAATCGCGT	14	False	NA	NA	False	AGTAAA	-12	NA	9212176	9215830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_9212200_9215800
ENSMUSG00000036908.18_2	chr19	+	2245	11	FSM	ENSMUSG00000036908.18	ENSMUST00000162708.7	2266	11	17	4	17	-3	multi-exon	FALSE	canonical	2	7	junction_5	6.90579466824782	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAGGGTGTAGGTTGTG	5202	False	NA	NA	False	AATAAA	-16	NA	3985202	3999336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3985353_3985761_3985904_3986268_3986423_3991519_3991682_3991884_3992018_3992348_3992443_3992693_3992819_3993528_3993712_3994022_3994297_3997006_3997126_3998627
ENSMUSG00000036908.18_3	chr19	+	2518	10	NIC	ENSMUSG00000036908.18	novel	2266	11	NA	NA	-7	-5	intron_retention	FALSE	canonical	2	7	junction_5	7.0728135390398	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGAGAGGGTGTAGGTTG	5178	False	NA	NA	False	AATAAA	-14	NA	3985178	3999334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_3985353_3985761_3985904_3986268_3986423_3991519_3991682_3991884_3992018_3992348_3992819_3993528_3993712_3994022_3994297_3997006_3997126_3998627
ENSMUSG00000036908.18_4	chr19	+	2065	10	NIC	ENSMUSG00000036908.18	novel	2266	11	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	7.99691298464293	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAGGGTGTAGGTTGTGTT	5222	False	NA	NA	False	AATAAA	-18	NA	3985222	3999338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_3985353_3985761_3985904_3986268_3986423_3991884_3992018_3992348_3992443_3992693_3992819_3993528_3993712_3994022_3994297_3997006_3997126_3998627
ENSMUSG00000036908.18_8	chr19	+	1372	3	FSM	ENSMUSG00000036908.18	ENSMUST00000162193.2	747	3	17	-642	17	642	multi-exon	FALSE	canonical	2	11	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAGCCAGGGTAGCTGCT	5242	False	NA	NA	False	AGTAAA	-19	NA	3985242	3987388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3985353_3985761_3985904_3986268
ENSMUSG00000036913.16_1	chr8	+	5446	1	NIC	ENSMUSG00000036913.16	novel	5705	11	NA	NA	36173	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACGGGTGTGCTCTGTG	NA	False	NA	NA	False	AATAAA	-25	NA	125556003	125561449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_125556000_125561400
ENSMUSG00000036915.18_0	chr7	-	2100	10	ISM	ENSMUSG00000036915.18	ENSMUST00000045817.14	3352	15	3089	5	2056	-5	3prime_fragment	FALSE	canonical	3	21	junction_5	10.0197336156404	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACGCAAATGTGCTTGT	NA	False	NA	NA	False	AATAAA	-11	NA	30153851	30146965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30147880_30149261_30149328_30149802_30149904_30150226_30150326_30152105_30152326_30152478_30152580_30152836_30152970_30153060_30153189_30153438_30153588_30153662
ENSMUSG00000036915.18_1	chr7	-	2892	15	FSM	ENSMUSG00000036915.18	ENSMUST00000045817.14	3352	15	455	5	455	-5	multi-exon	FALSE	canonical	3	10	junction_12	10.266102334521	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACGCAAATGTGCTTGT	NA	False	NA	NA	False	AATAAA	-11	NA	30156485	30146965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30147880_30149261_30149328_30149802_30149904_30150226_30150326_30152105_30152326_30152478_30152580_30152836_30152970_30153060_30153189_30153438_30153588_30153662_30153769_30153933_30154085_30154596_30154758_30154889_30155040_30155844_30155995_30156222
ENSMUSG00000036915.18_2	chr7	-	3250	16	NNC	ENSMUSG00000036915.18	novel	3352	15	NA	NA	50	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	12.4999555554765	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACGCAAATGTGCTTGT	NA	False	NA	NA	False	AATAAA	-11	NA	30156890	30146965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_30147880_30149261_30149328_30149802_30149904_30150226_30150326_30152105_30152326_30152478_30152580_30152836_30152970_30153060_30153189_30153438_30153588_30153662_30153769_30153933_30154085_30154596_30154758_30154889_30155040_30155844_30155995_30156222_30156586_30156632
ENSMUSG00000036915.18_23	chr7	-	2744	14	NIC	ENSMUSG00000036915.18	novel	3352	15	NA	NA	461	1	combination_of_known_splicesites	FALSE	canonical	2	4	junction_13	12.7909916525507	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGCTTGTGAAAGACC	NA	False	NA	NA	False	AATAAA	-19	NA	30156479	30146957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30147880_30149261_30149328_30149802_30149904_30150226_30150326_30152105_30152326_30152478_30152580_30152836_30152970_30153060_30153189_30153438_30153588_30153662_30153769_30153933_30154085_30154596_30154758_30154889_30155040_30156222
ENSMUSG00000036915.18_5	chr7	-	1825	8	ISM	ENSMUSG00000036915.18	ENSMUST00000045817.14	3352	15	3689	5	2656	-5	3prime_fragment	FALSE	canonical	3	21	junction_5	11.2049551720729	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACGCAAATGTGCTTGT	NA	False	NA	NA	False	AATAAA	-11	NA	30153251	30146965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30147880_30149261_30149328_30149802_30149904_30150226_30150326_30152105_30152326_30152478_30152580_30152836_30152970_30153060
ENSMUSG00000036916.14_0	chrX	-	4021	21	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	1	-46	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	26.1914108058348	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTGGGAATTATTTTAT	NA	False	NA	-3	True	AATAAA	-17	NA	47683267	47630548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47682390_47682476_47683240
ENSMUSG00000036916.14_10	chrX	-	4105	21	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	-23	-13	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	27.0766966227419	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAAAAACCTACAGATTG	NA	False	NA	30	True	AATAAA	-8	NA	47683291	47630515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667434_47677579_47677627_47680549_47680639_47682390_47682476_47683240
ENSMUSG00000036916.14_14	chrX	-	3899	20	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	0	-50	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	28.9537791944314	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACTCTTGGGAATTATT	NA	False	NA	-7	True	AATAAA	-13	NA	47683268	47630552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_47632167_47632281_47632319_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47682390_47682476_47683240
ENSMUSG00000036916.14_24	chrX	-	3983	20	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	-19	-46	combination_of_known_junctions	FALSE	canonical	3	32	junction_17	17.5929663608489	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTGGGAATTATTTTAT	NA	False	NA	-3	True	AATAAA	-17	NA	47683287	47630548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667434_47677579_47677627_47680549_47680639_47683240
ENSMUSG00000036916.14_3	chrX	-	3962	20	FSM	ENSMUSG00000036916.14	ENSMUST00000072292.12	4045	20	39	44	-22	-43	multi-exon	FALSE	canonical	3	45	junction_17	15.8598431908636	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGAATTATTTTATAAT	NA	False	NA	0	True	AATAAA	-20	NA	47683290	47630545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47683240
ENSMUSG00000036916.14_4	chrX	-	3885	19	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	-23	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	20.1286755711078	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGATTGCATCATCTAAT	NA	False	NA	41	True	AATAAA	-19	NA	47683291	47630504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_47632167_47632281_47632319_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47683240
ENSMUSG00000036916.14_41	chrX	-	3888	19	NIC	ENSMUSG00000036916.14	novel	4024	20	NA	NA	-6	-9	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	21.556128285633	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCTACAGATTGCATC	NA	False	NA	34	True	AATAAA	-12	NA	47683274	47630511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_47632167_47632281_47632319_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667434_47677579_47677627_47680549_47680639_47683240
ENSMUSG00000036916.14_5	chrX	-	1121	1	ISM	ENSMUSG00000036916.14	ENSMUST00000076635.13	4355	19	49337	51	908	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACTCTTGGGAATTATT	NA	False	NA	-7	True	AATAAA	-13	NA	47631673	47630552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_47630600_47631700
ENSMUSG00000036918.17_0	chr17	+	4588	20	FSM	ENSMUSG00000036918.17	ENSMUST00000041110.12	4614	20	17	9	-2	-9	multi-exon	FALSE	canonical	3	58	junction_15	8.33807805830403	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTGTCTGAAGAGTGTC	NA	False	NA	4	True	AATAAA	-19	NA	87590330	87689188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_87590839_87597616_87597781_87600238_87600408_87614356_87614488_87616156_87616273_87628830_87628910_87629865_87630024_87630551_87630616_87636750_87636889_87637452_87637537_87641694_87641800_87647318_87647437_87648315_87648374_87649494_87649568_87653968_87654130_87666541_87666659_87669276_87669372_87670883_87671019_87677886_87678090_87687276
ENSMUSG00000036918.17_10	chr17	+	898	1	FSM	ENSMUSG00000036918.17	ENSMUST00000234468.2	868	1	-35	5	8	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCAGACTTAGACCGATG	NA	False	NA	NA	False	AATAAA	-21	NA	87590340	87591238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_87590300_87591200
ENSMUSG00000036918.17_22	chr17	+	1507	1	ISM	ENSMUSG00000036918.17	ENSMUST00000041110.12	4614	20	97375	2	1408	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAAGAGTGTCCAGTTAC	NA	False	NA	11	True	AATAAA	-26	NA	87687688	87689195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_87687700_87689200
ENSMUSG00000036918.17_6	chr17	+	4705	21	NNC	ENSMUSG00000036918.17	novel	4614	20	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	20.231164079212	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAAGAGTGTCCAGTTAC	NA	False	NA	11	True	AATAAA	-26	NA	87590343	87689195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_87590839_87597616_87597781_87600238_87600408_87601371_87601495_87614356_87614488_87616156_87616273_87628830_87628910_87629865_87630024_87630551_87630616_87636750_87636889_87637452_87637537_87641694_87641800_87647318_87647437_87648315_87648374_87649494_87649568_87653968_87654130_87666541_87666659_87669276_87669372_87670883_87671019_87677886_87678090_87687276
ENSMUSG00000036928.15_1	chr5	+	4170	34	NIC	ENSMUSG00000036928.15	novel	4211	34	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	2	29	junction_1	25.0320272353535	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTATGACTTGAGATTG	NA	False	NA	17	True	AATAAA	-17	NA	138278791	138310652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_138278883_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
ENSMUSG00000036928.15_2	chr5	+	4200	34	FSM	ENSMUSG00000036928.15	ENSMUST00000048028.15	4211	34	8	3	8	0	multi-exon	FALSE	canonical	2	72	junction_1	21.1857845161499	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTATGACTTGAGATTG	NA	False	NA	17	True	AATAAA	-17	NA	138278795	138310652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
ENSMUSG00000036928.15_23	chr5	+	4138	34	FSM	ENSMUSG00000036928.15	ENSMUST00000162245.8	4123	34	-18	3	0	0	multi-exon	TRUE	canonical	1	2	junction_1	28.1737362148663	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTATGACTTGAGATTG	NA	False	NA	17	True	AATAAA	-17	NA	138278787	138310652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138278847_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
ENSMUSG00000036931.16_0	chr7	+	2009	12	FSM	ENSMUSG00000036931.16	ENSMUST00000108176.9	2014	12	4	1	4	0	multi-exon	FALSE	canonical	2	3	junction_1	5.20965410250706	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGTGTGGTGTCATTAA	NA	False	NA	15	True	ATTAAA	-15	NA	30121160	30128170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30121260_30122827_30122929_30123059_30123121_30123664_30123877_30124646_30124835_30124926_30125033_30125133_30125281_30125394_30125447_30125540_30125690_30126492_30126610_30126850_30127016_30127558
ENSMUSG00000036931.16_1	chr7	+	3115	11	FSM	ENSMUSG00000036931.16	ENSMUST00000046177.9	2039	11	-1083	7	-214	-6	multi-exon	FALSE	canonical	2	4	junction_9	4.70744091837593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCAGACTGTGTGGTGT	NA	False	NA	9	True	ATTAAA	-9	NA	30121616	30128164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30122929_30123059_30123121_30123664_30123877_30124646_30124835_30124926_30125033_30125133_30125281_30125394_30125447_30125540_30125690_30126492_30126610_30126850_30127016_30127558
ENSMUSG00000036931.16_4	chr7	+	2101	11	NIC	ENSMUSG00000036931.16	novel	2014	12	NA	NA	4	-2	intron_retention	FALSE	canonical	2	3	junction_1	5.2687759489278	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACTGTGTGGTGTCATT	NA	False	NA	13	True	ATTAAA	-13	NA	30121160	30128168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30121260_30122827_30122929_30123059_30123121_30123664_30123877_30124646_30124835_30124926_30125033_30125133_30125281_30125394_30125690_30126492_30126610_30126850_30127016_30127558
ENSMUSG00000036932.15_0	chrX	-	2096	16	FSM	ENSMUSG00000036932.15	ENSMUST00000037349.8	2237	16	140	1	3	0	multi-exon	FALSE	canonical	3	1039	junction_9	82.1482129378898	1296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGGTTGTTTTATTTTA	NA	False	NA	-2	True	ATTAAA	-15	NA	47602300	47563821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
ENSMUSG00000036934.10_0	chr8	-	1463	4	FSM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	25	99	6	-99	multi-exon	FALSE	canonical	3	253	junction_1	19.3045763140937	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGATTAAGTAGTGTGGT	NA	False	NA	-5	True	AATAAA	-18	NA	86159437	86135486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_86136520_86138741_86138925_86153488_86153586_86159287
ENSMUSG00000036940.16_1	chr4	-	3043	20	FSM	ENSMUSG00000036940.16	ENSMUST00000105847.8	3028	20	-35	20	1	-20	multi-exon	FALSE	canonical	3	991	junction_18	209.393504887799	1926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAATTTTATATGAAAA	NA	False	NA	-29	True	AATAAA	-6	NA	136330033	136277874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_136278345_136279182_136279330_136279771_136279900_136281106_136281222_136281523_136281712_136282483_136282617_136284952_136285065_136285808_136285883_136286483_136286619_136287633_136287725_136288328_136288472_136295883_136295979_136297768_136297851_136299528_136299636_136300383_136300477_136301335_136301415_136304381_136304516_136309350_136309411_136320275_136320442_136329542
ENSMUSG00000036940.16_2	chr4	-	2983	19	FSM	ENSMUSG00000036940.16	ENSMUST00000116273.9	3008	19	1	24	1	-20	multi-exon	FALSE	canonical	3	907	junction_17	208.707545398275	1481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAATTTTATATGAAAA	NA	False	NA	-29	True	AATAAA	-6	NA	136330033	136277874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_136278345_136279182_136279330_136279771_136279900_136281106_136281222_136281523_136281712_136282483_136282617_136284952_136285065_136285808_136285883_136286483_136286619_136287633_136287725_136288328_136288472_136295883_136295979_136297768_136297851_136299528_136299636_136300383_136300477_136301335_136301415_136304381_136304516_136320275_136320442_136329542
ENSMUSG00000036941.3_0	chr18	-	2465	4	FSM	ENSMUSG00000036941.3	ENSMUST00000041138.3	4971	4	11	2495	11	-2495	multi-exon	FALSE	canonical	3	22	junction_1	4.32049379893857	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAAGCTAGGAGTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	73887539	73870603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_73872372_73875407_73875873_73880237_73880403_73887472
ENSMUSG00000036941.3_3	chr18	-	3107	1	ISM	ENSMUSG00000036941.3	ENSMUST00000041138.3	4971	4	16324	11	16324	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGATCACATTTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	73871226	73868119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_73868100_73871200
ENSMUSG00000036941.3_8	chr18	-	4799	3	ISM	ENSMUSG00000036941.3	ENSMUST00000041138.3	4971	4	7239	3	7239	-3	3prime_fragment	FALSE	canonical	3	22	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTTCCTTGTCCTGCGGT	NA	False	NA	NA	False	NA	NA	NA	73880311	73868111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_73872372_73875407_73875873_73880237
ENSMUSG00000036943.10_0	chr9	-	4705	8	FSM	ENSMUSG00000036943.10	ENSMUST00000041139.9	4733	8	20	8	20	-8	multi-exon	FALSE	canonical	2	19	junction_5	12.9992150469455	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGATTATGACTCTTA	7771	False	NA	-9	True	AATAAA	-13	NA	66826949	66750953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_66755094_66755879_66755931_66758615_66758682_66760208_66760299_66761949_66762028_66768118_66768180_66770704_66770766_66826791
ENSMUSG00000036943.10_1	chr9	-	2708	1	ISM	ENSMUSG00000036943.10	ENSMUST00000041139.9	4733	8	73308	8	73308	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGATTATGACTCTTA	NA	False	NA	-9	True	AATAAA	-13	NA	66753661	66750953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_66751000_66753700
ENSMUSG00000036948.18_0	chr5	-	2799	10	FSM	ENSMUSG00000036948.18	ENSMUST00000159649.8	2093	10	-708	2	-15	0	multi-exon	FALSE	canonical	3	30	junction_4	5.95248677154617	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGAGTTTGTCTGTGTG	9201	False	NA	-4	True	ATTAAA	-16	NA	138262310	138257921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138258657_138258775_138258970_138259096_138259252_138259814_138259979_138260063_138260147_138260431_138260580_138260675_138260797_138260919_138261007_138261108_138261239_138261328
ENSMUSG00000036948.18_10	chr5	-	1731	9	ISM	ENSMUSG00000036948.18	ENSMUST00000159649.8	2093	10	453	-1	251	-1	3prime_fragment	FALSE	canonical	3	30	junction_4	6.29980158417708	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTTTGTCTGTGTGTTG	2985	False	NA	-1	True	ATTAAA	-19	NA	138261149	138257918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_138258657_138258775_138258970_138259096_138259252_138259814_138259979_138260063_138260147_138260431_138260580_138260675_138260797_138260919_138261007_138261108
ENSMUSG00000036948.18_3	chr5	-	2514	11	FSM	ENSMUSG00000036948.18	ENSMUST00000048421.14	2490	11	-30	6	9	-2	multi-exon	FALSE	canonical	3	23	junction_10	7.05761999543756	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTATGAGTTTGTCTGTG	9225	False	NA	-6	True	ATTAAA	-14	NA	138262286	138257923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138258657_138258775_138258970_138259096_138259252_138259814_138259979_138260063_138260147_138260431_138260580_138260675_138260797_138260919_138261007_138261108_138261239_138261328_138261425_138261683
ENSMUSG00000036948.18_8	chr5	-	826	1	Genic_Genomic	ENSMUSG00000036948.18	novel	NA	NA	NA	NA	1134	670	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	6061	False	NA	NA	False	NA	NA	NA	138258073	138257247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_-_138257200_138258100
ENSMUSG00000036955.17_0	chr10	-	2430	7	FSM	ENSMUSG00000036955.17	ENSMUST00000065887.14	2472	7	33	9	-8	-5	multi-exon	FALSE	canonical	3	136	junction_2	17.3629554575891	321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGTAATTACTTTTATT	8234	False	NA	-9	True	AATAAA	-13	NA	62414203	62394257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62395663_62399014_62399131_62401815_62401901_62405237_62405422_62406177_62406258_62410828_62410928_62413742
ENSMUSG00000036957.9_0	chr7	-	3211	3	FSM	ENSMUSG00000036957.9	ENSMUST00000046351.7	2886	3	-327	2	-327	-2	multi-exon	FALSE	canonical	3	10	junction_2	2	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTCGGGCTGTTCCTTTG	NA	False	NA	NA	False	AAGAAA	-14	NA	30062524	30054915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30055529_30058808_30060240_30061357
ENSMUSG00000036957.9_2	chr7	-	1489	2	ISM	ENSMUSG00000036957.9	ENSMUST00000046351.7	2886	3	2512	3	2512	-3	3prime_fragment	FALSE	canonical	3	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCTCGGGCTGTTCCTTT	NA	False	NA	NA	False	AAGAAA	-13	NA	30059685	30054916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30055529_30058808
ENSMUSG00000036959.16_17	chrX	+	924	1	ISM	ENSMUSG00000036959.16	ENSMUST00000136348.8	7446	15	65763	5	37853	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTGAAAAACCCGTGTCA	NA	False	NA	-2	True	AAAACA	-6	NA	47495997	47496921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_47496000_47496900
ENSMUSG00000036959.16_4	chrX	+	6049	15	NIC	ENSMUSG00000036959.16	novel	5591	12	NA	NA	7	-113	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	8.55027150780271	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTTGTCTCCCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	47430944	47495473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_47431127_47431677_47431758_47450409_47450540_47456295_47456387_47456645_47459910_47463899_47464066_47465873_47465955_47467820_47468208_47472798_47473023_47477952_47478175_47480747_47480915_47482030_47482177_47489437_47489516_47490635_47490787_47494793
ENSMUSG00000036959.16_5	chrX	+	5720	14	FSM	ENSMUSG00000036959.16	ENSMUST00000037596.13	7360	14	-80	1720	-80	-380	multi-exon	FALSE	canonical	2	7	junction_1	7.66996755970088	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCCAGCATTAGTGACTG	NA	False	NA	14	True	NA	NA	NA	47432566	47495206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_47432767_47450409_47450540_47456295_47456387_47456645_47459910_47463899_47464066_47465873_47465955_47467820_47468208_47472798_47473023_47477952_47478175_47480747_47480915_47482030_47482177_47489437_47489516_47490635_47490787_47494793
ENSMUSG00000036959.16_9	chrX	+	3590	11	ISM	ENSMUSG00000036959.16	ENSMUST00000037596.13	7360	14	26084	1344	586	-4	3prime_fragment	FALSE	canonical	3	9	junction_8	6.847627326308	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAACTTGTTGTATTGAG	NA	False	NA	NA	False	NA	NA	NA	47458730	47495582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_47459910_47463899_47464066_47465873_47465955_47467820_47468208_47472798_47473023_47477952_47478175_47480747_47480915_47482030_47482177_47489437_47489516_47490635_47490787_47494793
ENSMUSG00000036966.16_1	chr15	-	2424	11	FSM	ENSMUSG00000036966.16	ENSMUST00000154032.2	2456	11	28	4	-14	-4	multi-exon	FALSE	canonical	3	150	junction_5	18.3913022921162	306	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACAGACGGAAGGGGAAT	NA	False	NA	-9	True	AATAAA	-22	NA	102044641	102024966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102026149_102026475_102026649_102026726_102026847_102027362_102027421_102027702_102027853_102036973_102037160_102038712_102038849_102039100_102039226_102040302_102040379_102041850_102041998_102044570
ENSMUSG00000036968.16_0	chr5	+	1550	6	FSM	ENSMUSG00000036968.16	ENSMUST00000110934.9	1855	6	29	276	29	-276	multi-exon	FALSE	canonical	3	120	junction_5	26.1350339582714	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGCTGAGTCCCATTTCA	5627	False	NA	15	True	ATTAAA	-15	NA	138185775	138191904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138185983_138188531_138188659_138188754_138188852_138190099_138190223_138190822_138190941_138191026
ENSMUSG00000036968.16_2	chr5	+	1474	5	ISM	ENSMUSG00000036968.16	ENSMUST00000110934.9	1855	6	2654	276	27	-276	3prime_fragment	FALSE	canonical	3	120	junction_4	28.3581998723473	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGCTGAGTCCCATTTCA	856	False	NA	15	True	ATTAAA	-15	NA	138188400	138191904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_138188659_138188754_138188852_138190099_138190223_138190822_138190941_138191026
ENSMUSG00000036975.6_0	chr1	-	1707	1	ISM	ENSMUSG00000036975.6	ENSMUST00000037906.6	3341	2	2284	1328	2284	-1328	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGGGACTGATACGTGG	NA	False	NA	NA	False	NA	NA	NA	119838654	119836947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_119836900_119838700
ENSMUSG00000036975.6_1	chr1	-	1480	2	FSM	ENSMUSG00000036975.6	ENSMUST00000037906.6	3341	2	40	1821	40	-1821	multi-exon	FALSE	canonical	3	113	junction_1	0	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGTCTCTGAATTCCAGT	NA	False	NA	-11	True	AATAAA	-17	NA	119840898	119837440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_119838885_119840862
ENSMUSG00000036977.9_0	chr8	+	796	5	NIC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	3	195	junction_1	137.767920794356	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAATTTGAAGTCAAT	NA	False	NA	2	True	AATAAA	-20	NA	80438427	80501971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_80438474_80439781_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_10	chr8	+	807	4	ISM	ENSMUSG00000036977.9	ENSMUST00000048147.9	2801	5	1282	1972	1251	6	3prime_fragment	FALSE	canonical	3	499	junction_2	11.4697670227235	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTGAAGTCAATCTTTAA	NA	False	NA	8	True	AATAAA	-26	NA	80439730	80501977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_2	chr8	+	837	5	FSM	ENSMUSG00000036977.9	ENSMUST00000048147.9	2801	5	-8	1972	-8	6	multi-exon	FALSE	canonical	3	102	junction_1	177.95698216142	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTGAAGTCAATCTTTAA	NA	False	NA	8	True	AATAAA	-26	NA	80438440	80501977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_80438474_80439733_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_6	chr8	+	657	4	NIC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	212.071266847308	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAATTTGAAGTCAAT	NA	False	NA	2	True	AATAAA	-20	NA	80438445	80501971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_80438474_80439781_80439909_80446286_80446378_80501560
ENSMUSG00000036977.9_7	chr8	+	868	5	FSM	ENSMUSG00000036977.9	ENSMUST00000210812.2	4591	5	10	3713	10	4	multi-exon	FALSE	canonical	3	128	junction_1	166.717388115337	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATTTGAAGTCAATCTTT	NA	False	NA	6	True	AATAAA	-24	NA	80438489	80501975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_80438604_80439781_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_8	chr8	+	913	5	NIC	ENSMUSG00000036977.9	novel	4591	5	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	204.767398528184	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAATTTGAAGTCAAT	NA	False	NA	2	True	AATAAA	-20	NA	80438488	80501971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_80438604_80439733_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036980.14_1	chr5	-	2289	15	FSM	ENSMUSG00000036980.14	ENSMUST00000048698.14	2304	15	10	5	0	-2	multi-exon	FALSE	canonical	3	362	junction_14	100.146932869985	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTGTGAGCCTCCCGCA	1962	False	NA	-9	True	AATAAA	-13	NA	138185478	138176883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185431
ENSMUSG00000036980.14_11	chr5	-	2374	15	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	170	junction_14	144.727259325383	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTGTGAGCCTCCCGCA	1963	False	NA	-9	True	AATAAA	-13	NA	138185477	138176883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185345
ENSMUSG00000036980.14_4	chr5	-	2496	15	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	40	junction_14	176.391146985028	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTGTGAGCCTCCCGCA	1963	False	NA	-9	True	AATAAA	-13	NA	138185477	138176883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185223
ENSMUSG00000036980.14_7	chr5	-	2395	15	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_14	167.30713843536	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTGTGAGCCTCCCGCA	1963	False	NA	-9	True	AATAAA	-13	NA	138185477	138176883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185324
ENSMUSG00000036983.8_0	chr17	-	1378	7	FSM	ENSMUSG00000036983.8	ENSMUST00000041003.8	1402	7	26	-2	-1	2	multi-exon	FALSE	canonical	3	69	junction_2	6.8414585839246	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACCTAACAGCTCAAAGA	NA	False	NA	NA	False	AATAAA	-18	NA	3608030	3569528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605359_3607855
ENSMUSG00000036983.8_8	chr17	-	1150	6	ISM	ENSMUSG00000036983.8	ENSMUST00000041003.8	1402	7	2765	-16	2718	16	3prime_fragment	FALSE	canonical	3	69	junction_2	6.92820323027551	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGAAAATGCCCAAAGGA	NA	False	NA	NA	False	AATAAA	-32	NA	3605291	3569514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206
ENSMUSG00000036985.13_0	chrX	-	2951	10	FSM	ENSMUSG00000036985.13	ENSMUST00000037960.11	2982	10	27	4	-2	-4	multi-exon	FALSE	canonical	3	96	junction_4	12.3107902084129	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGATGCCTGCCTCCTCC	NA	False	NA	-6	True	ATTAAA	-12	NA	47297537	47260849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_47262519_47266916_47267014_47267385_47267490_47270123_47270227_47270975_47271025_47271897_47272036_47280097_47280257_47283436_47283598_47295544_47295835_47297356
ENSMUSG00000036985.13_2	chrX	-	3094	10	NIC	ENSMUSG00000036985.13	novel	2982	10	NA	NA	-116	-2	combination_of_known_junctions	FALSE	canonical	2	7	junction_9	37.8235017409893	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATGCCTGCCTCCTCCTT	NA	False	NA	-4	True	ATTAAA	-14	NA	47297321	47260847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_47262519_47266916_47267014_47267385_47267490_47270123_47270227_47270975_47271025_47271897_47272036_47280097_47280257_47283436_47283598_47295544_47295835_47296999
ENSMUSG00000036985.13_4	chrX	-	1144	1	ISM	ENSMUSG00000036985.13	ENSMUST00000037960.11	2982	10	35568	7	35209	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCAAGATGCCTGCCTCC	NA	False	NA	-9	True	ATTAAA	-9	NA	47261996	47260852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_47260900_47262000
ENSMUSG00000036985.13_8	chrX	-	3004	6	FSM	ENSMUSG00000036985.13	ENSMUST00000123054.8	1388	6	5	-1621	-2	1621	multi-exon	FALSE	canonical	3	110	junction_1	9.45304183847718	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTAACTTTACCTTCTAC	NA	False	NA	NA	False	AATAAA	-7	NA	47297537	47268949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_47271025_47271897_47272036_47280097_47280257_47283436_47283598_47295544_47295835_47297356
ENSMUSG00000036986.17_1	chr9	-	4041	9	FSM	ENSMUSG00000036986.17	ENSMUST00000085673.11	4481	9	26	414	26	52	multi-exon	FALSE	canonical	3	249	junction_4	53.0057485090061	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGAATATCTGATATGC	2177	False	NA	39	True	NA	NA	NA	58157043	58125772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ENSMUSG00000036986.17_10	chr9	-	3985	9	FSM	ENSMUSG00000036986.17	ENSMUST00000135310.8	4413	9	-28	456	25	0	multi-exon	FALSE	canonical	3	33	junction_1	114.3314807916	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCATGTCTGTAATTTTG	2176	False	NA	-13	True	NA	NA	NA	58157044	58125824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ENSMUSG00000036986.17_14	chr9	-	3049	11	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	112.525063874676	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCATGTCTGTAATTTTG	2182	False	NA	-13	True	NA	NA	NA	58157038	58125824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_58126012_58126793_58126953_58127105_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ENSMUSG00000036986.17_18	chr9	-	3499	8	ISM	ENSMUSG00000036986.17	ENSMUST00000085673.11	4481	9	2618	466	2455	0	3prime_fragment	FALSE	canonical	3	249	junction_4	53.1128947792976	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCATGTCTGTAATTTTG	4769	False	NA	-13	True	NA	NA	NA	58154451	58125824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257
ENSMUSG00000036986.17_2	chr9	-	3898	8	FSM	ENSMUSG00000036986.17	ENSMUST00000114136.9	4343	8	31	414	-22	52	multi-exon	FALSE	canonical	3	178	junction_4	73.8752395624418	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGAATATCTGATATGC	2182	False	NA	39	True	NA	NA	NA	58157038	58125772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ENSMUSG00000036986.17_4	chr9	-	1822	1	ISM	ENSMUSG00000036986.17	ENSMUST00000085673.11	4481	9	29880	9	10221	1	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCTAACATTCTGATTG	NA	False	NA	-10	True	AGTAAA	-14	NA	58127189	58125367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_58125400_58127200
ENSMUSG00000036986.17_5	chr9	-	3847	8	FSM	ENSMUSG00000036986.17	ENSMUST00000126690.8	4206	8	-96	455	25	0	multi-exon	FALSE	canonical	3	33	junction_1	129.417848814747	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCATGTCTGTAATTTTG	2176	False	NA	-13	True	NA	NA	NA	58157044	58125824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
ENSMUSG00000036989.17_0	chr7	-	2898	12	NIC	ENSMUSG00000036989.17	novel	2841	12	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	14.9848408248288	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGCTAGGTTCTTGT	NA	False	NA	-2	True	AATAAA	-15	NA	105282785	105259856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_105260418_105260535_105260677_105261813_105261885_105262104_105262274_105262455_105262624_105266647_105266752_105266948_105267682_105267872_105268054_105268265_105268436_105268589_105268822_105274612_105274779_105282583
ENSMUSG00000036989.17_2	chr7	-	2825	12	FSM	ENSMUSG00000036989.17	ENSMUST00000057525.14	3016	12	7	184	7	-4	multi-exon	FALSE	canonical	3	8	junction_11	13.9497326613206	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTGTTTTTGCTAGGTTC	NA	False	NA	-6	True	AATAAA	-11	NA	105282760	105259860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105260418_105260535_105260677_105261813_105261885_105262104_105262274_105262455_105262624_105266647_105266752_105266948_105267682_105267872_105268054_105268265_105268418_105268589_105268822_105274612_105274779_105282609
ENSMUSG00000036989.17_20	chr7	-	2865	12	NIC	ENSMUSG00000036989.17	novel	2841	12	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	16.03560088889	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTGTTTTTGCTAGGTTC	NA	False	NA	-6	True	AATAAA	-11	NA	105282779	105259860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_105260418_105260535_105260677_105261813_105261885_105262104_105262274_105262455_105262624_105266647_105266752_105266948_105267682_105267872_105268054_105268265_105268418_105268594_105268822_105274612_105274779_105282583
ENSMUSG00000036989.17_3	chr7	-	2857	12	FSM	ENSMUSG00000036989.17	ENSMUST00000106789.8	2841	12	-22	6	1	-4	multi-exon	FALSE	canonical	3	39	junction_9	7.22140985754018	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTGTTTTTGCTAGGTTC	NA	False	NA	-6	True	AATAAA	-11	NA	105282766	105259860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105260418_105260535_105260677_105261813_105261885_105262104_105262274_105262455_105262624_105266647_105266752_105266948_105267682_105267872_105268054_105268265_105268418_105268589_105268822_105274612_105274779_105282583
ENSMUSG00000036989.17_4	chr7	-	4001	11	NIC	ENSMUSG00000036989.17	novel	2841	12	NA	NA	5	-4	intron_retention	FALSE	canonical	3	39	junction_8	7.22841614740048	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTGTTTTTGCTAGGTTC	NA	False	NA	-6	True	AATAAA	-11	NA	105282773	105259860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_105260418_105260535_105261885_105262104_105262274_105262455_105262624_105266647_105266752_105266948_105267682_105267872_105268054_105268265_105268418_105268589_105268822_105274612_105274779_105282583
ENSMUSG00000036989.17_9	chr7	-	4003	11	NIC	ENSMUSG00000036989.17	novel	2841	12	NA	NA	-2	-4	intron_retention	FALSE	canonical	0	0	junction_8	16.4632925018053	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTGTTTTTGCTAGGTTC	NA	False	NA	-6	True	AATAAA	-11	NA	105282780	105259860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_105260418_105260535_105261885_105262104_105262274_105262455_105262624_105266647_105266752_105266948_105267682_105267872_105268054_105268265_105268418_105268594_105268822_105274612_105274779_105282583
ENSMUSG00000036990.14_0	chr8	+	7454	21	FSM	ENSMUSG00000036990.14	ENSMUST00000173286.8	7213	21	-244	3	-158	-3	multi-exon	FALSE	canonical	3	98	junction_10	41.3350940485201	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCTTGGGATTCTTTGG	NA	False	NA	14	True	ATTAAA	-14	NA	80366088	80404298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_80366694_80370382_80370467_80372926_80372978_80377634_80377682_80378300_80378374_80379991_80380074_80382288_80382422_80385537_80385593_80385812_80385931_80386026_80386092_80387669_80387765_80390353_80390455_80390550_80390741_80391609_80391773_80393344_80393469_80394229_80394286_80395065_80395141_80395902_80396042_80396552_80396808_80397674_80397716_80399396
ENSMUSG00000036990.14_3	chr8	+	7461	21	FSM	ENSMUSG00000036990.14	ENSMUST00000173078.8	7354	21	-163	56	-163	-4	multi-exon	FALSE	canonical	3	98	junction_10	41.3350940485201	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGCTTGGGATTCTTTG	NA	False	NA	13	True	ATTAAA	-13	NA	80366083	80404297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_80366694_80370382_80370467_80372926_80372978_80377634_80377682_80378300_80378374_80379991_80380074_80382288_80382422_80385537_80385593_80385812_80385931_80386026_80386092_80387666_80387765_80390353_80390455_80390550_80390741_80391609_80391773_80393344_80393469_80394229_80394286_80395065_80395141_80395902_80396042_80396552_80396808_80397674_80397716_80399396
ENSMUSG00000036990.14_66	chr8	+	3704	1	Genic_Genomic	ENSMUSG00000036990.14	novel	NA	NA	NA	NA	7216	18	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTGAAAATGACATGGTT	NA	False	NA	-5	True	AGTAAA	-1	NA	80400667	80404371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_80400700_80404400
ENSMUSG00000036992.11_0	chr2	+	928	2	FSM	ENSMUSG00000036992.11	ENSMUST00000047177.4	956	2	27	1	27	-1	multi-exon	FALSE	canonical	3	586	junction_1	0	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATGTCTAAATCTTGAG	NA	False	NA	14	True	AATAAA	-18	NA	148514572	148517946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_148514756_148517201
ENSMUSG00000036992.11_1	chr2	+	1060	3	FSM	ENSMUSG00000036992.11	ENSMUST00000109961.8	1116	3	55	1	30	-1	multi-exon	FALSE	canonical	3	22	junction_1	28	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATGTCTAAATCTTGAG	NA	False	NA	14	True	AATAAA	-18	NA	148514575	148517946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_148514756_148516383_148516519_148517201
ENSMUSG00000036995.8_1	chr4	+	3875	25	FSM	ENSMUSG00000036995.8	ENSMUST00000047526.8	4225	25	36	314	36	-314	multi-exon	FALSE	canonical	3	23	junction_10	6.55532014643238	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCAACTTGTGTTCATCT	1358	False	NA	7	True	AAAACA	-19	NA	135933711	135972213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_135933959_135954718_135954792_135954873_135955020_135955709_135955785_135956710_135956761_135960549_135960662_135960874_135960961_135961334_135961411_135961638_135961726_135961894_135962005_135963685_135963756_135964007_135964096_135965486_135965536_135965642_135965831_135965909_135966044_135966202_135966298_135966491_135966670_135967428_135967515_135967661_135967778_135968316_135968385_135968465_135968577_135968683_135968880_135969966_135970193_135970758_135970853_135971099
ENSMUSG00000036995.8_17	chr4	+	2784	15	ISM	ENSMUSG00000036995.8	ENSMUST00000047526.8	4225	25	30042	311	30042	-311	3prime_fragment	FALSE	canonical	3	26	junction_7	6.45865974597561	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACTTGTGTTCATCTCAT	5131	False	NA	10	True	AAAACA	-22	NA	135963717	135972216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135963756_135964007_135964096_135965486_135965536_135965642_135965831_135965909_135966044_135966202_135966298_135966491_135966670_135967428_135967515_135967661_135967778_135968316_135968385_135968465_135968577_135968683_135968880_135969966_135970193_135970758_135970853_135971099
ENSMUSG00000036995.8_31	chr4	+	2706	21	NIC	ENSMUSG00000036995.8	novel	4225	25	NA	NA	62	-1113	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	10.2755778426325	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCGTGGGACCCGTTCT	1384	False	NA	NA	False	NA	NA	NA	135933737	135971414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_135933959_135960549_135960662_135960874_135960961_135961334_135961411_135961638_135961726_135961894_135962005_135963685_135963756_135964007_135964096_135965486_135965536_135965642_135965831_135965909_135966044_135966202_135966298_135966491_135966670_135967428_135967515_135967661_135967778_135968316_135968385_135968465_135968577_135968683_135968880_135969966_135970193_135970758_135970853_135971099
ENSMUSG00000037001.11_0	chr11	-	3030	5	FSM	ENSMUSG00000037001.11	ENSMUST00000102703.2	3890	5	17	843	17	-843	multi-exon	FALSE	canonical	3	42	junction_4	4.94974746830583	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATTGTCTGTCAGAGCAC	7201	False	NA	-3	True	AATAAA	-13	NA	58795034	58779821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_58782373_58783787_58783881_58791390_58791518_58793568_58793734_58794940
ENSMUSG00000037001.11_2	chr11	-	1877	1	ISM	ENSMUSG00000037001.11	ENSMUST00000102703.2	3890	5	13352	844	13352	-844	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATTGTCTGTCAGAGCA	NA	False	NA	-4	True	AATAAA	-12	NA	58781699	58779822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_58779800_58781700
ENSMUSG00000037003.17_0	chr15	+	4703	29	FSM	ENSMUSG00000037003.17	ENSMUST00000228958.2	4268	29	-40	-395	-40	0	multi-exon	FALSE	canonical	1	1	junction_1	4.23180378388532	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTTTTGAGGAGTTGA	9318	False	NA	NA	False	AATAAA	-9	NA	102008807	102024826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102008988_102012964_102013074_102013773_102013812_102014678_102014718_102015025_102015065_102015223_102015274_102015449_102015622_102015916_102015968_102016236_102016360_102016445_102016511_102017289_102017374_102017755_102017869_102017947_102018009_102018134_102018211_102018905_102019036_102019113_102019180_102019305_102019420_102019516_102020729_102020863_102021012_102021101_102021668_102021770_102021861_102022144_102022271_102022475_102022569_102022695_102022774_102022905_102022984_102023424_102023594_102023995_102024065_102024171_102024202_102024292
ENSMUSG00000037003.17_2	chr15	+	4750	29	FSM	ENSMUSG00000037003.17	ENSMUST00000169627.9	4761	29	8	3	8	-2	multi-exon	TRUE	canonical	1	1	junction_1	4.23180378388532	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGGAGTTGATACCTTC	NA	False	NA	NA	False	AATAAA	-16	NA	102011376	102024833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102011597_102012964_102013074_102013773_102013812_102014678_102014718_102015025_102015065_102015223_102015274_102015449_102015622_102015916_102015968_102016236_102016360_102016445_102016511_102017289_102017374_102017755_102017869_102017947_102018009_102018134_102018211_102018905_102019036_102019113_102019180_102019305_102019420_102019516_102020729_102020863_102021012_102021101_102021668_102021770_102021861_102022144_102022271_102022475_102022569_102022695_102022774_102022905_102022984_102023424_102023594_102023995_102024065_102024171_102024202_102024292
ENSMUSG00000037003.17_5	chr15	+	4649	28	FSM	ENSMUSG00000037003.17	ENSMUST00000230474.2	4637	28	-19	7	-19	2	multi-exon	FALSE	canonical	2	5	junction_10	3.82361444641615	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTTTGAGGAGTTGATA	NA	False	NA	NA	False	AATAAA	-11	NA	102012840	102024828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102013074_102013773_102013812_102014678_102014718_102015025_102015065_102015223_102015274_102015449_102015622_102015916_102015968_102016236_102016360_102016445_102016511_102017289_102017374_102017755_102017869_102017947_102018009_102018134_102018211_102018905_102019036_102019113_102019180_102019305_102019420_102019516_102020729_102020863_102021012_102021101_102021668_102021770_102021861_102022144_102022271_102022475_102022569_102022695_102022774_102022905_102022984_102023424_102023594_102023995_102024065_102024171_102024202_102024292
ENSMUSG00000037003.17_7	chr15	+	4336	25	ISM	ENSMUSG00000037003.17	ENSMUST00000230474.2	4637	28	2169	7	-24	2	3prime_fragment	FALSE	canonical	2	5	junction_7	4.02768199119819	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTTTGAGGAGTTGATA	NA	False	NA	NA	False	AATAAA	-11	NA	102015028	102024828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102015065_102015223_102015274_102015449_102015622_102015916_102015968_102016236_102016360_102016445_102016511_102017289_102017374_102017755_102017869_102017947_102018009_102018134_102018211_102018905_102019036_102019113_102019180_102019305_102019420_102019516_102020729_102020863_102021012_102021101_102021668_102021770_102021861_102022144_102022271_102022475_102022569_102022695_102022774_102022905_102022984_102023424_102023594_102023995_102024065_102024171_102024202_102024292
ENSMUSG00000037003.17_9	chr15	+	4178	22	ISM	ENSMUSG00000037003.17	ENSMUST00000230474.2	4637	28	2964	0	771	0	3prime_fragment	FALSE	canonical	2	5	junction_4	4.0607629724434	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAGTTGATACCTTCTT	NA	False	NA	NA	False	AATAAA	-18	NA	102015823	102024835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102015968_102016236_102016360_102016445_102016511_102017289_102017374_102017755_102017869_102017947_102018009_102018134_102018211_102018905_102019036_102019113_102019180_102019305_102019420_102019516_102020729_102020863_102021012_102021101_102021668_102021770_102021861_102022144_102022271_102022475_102022569_102022695_102022774_102022905_102022984_102023424_102023594_102023995_102024065_102024171_102024202_102024292
ENSMUSG00000037005.17_2	chrX	+	3090	21	FSM	ENSMUSG00000037005.17	ENSMUST00000077775.11	3498	21	97	311	97	0	multi-exon	FALSE	canonical	3	24	junction_11	7.3109506905737	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGTGTGGGCAGACTC	NA	False	NA	NA	False	ATTAAA	-27	NA	47197698	47225547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_47198072_47200601_47200676_47202553_47202665_47204804_47204869_47205828_47205934_47206154_47206242_47207211_47207359_47210677_47210780_47211405_47211488_47211764_47211961_47212715_47212806_47213492_47213603_47214221_47214300_47215745_47215818_47217601_47217663_47218923_47218994_47219555_47219661_47220024_47220085_47220774_47220852_47223961_47224052_47224611
ENSMUSG00000037005.17_3	chrX	+	3227	7	ISM	ENSMUSG00000037005.17	ENSMUST00000114998.8	3017	20	-257	13438	-63	8433	5prime_fragment	TRUE	canonical	3	34	junction_5	7.51480021173033	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGAGCTTTTGGTTCTA	NA	False	NA	NA	False	AATAAA	-23	NA	47197538	47209464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_47198072_47200601_47200676_47202553_47202665_47204804_47204869_47205828_47205934_47206154_47206242_47207211
ENSMUSG00000037007.18_0	chr5	-	3048	5	FSM	ENSMUSG00000037007.18	ENSMUST00000049393.15	6470	5	25	3397	-15	1568	multi-exon	TRUE	canonical	3	14	junction_2	1.4790199457749	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGTATCAGTGGGTAC	1736	False	NA	NA	False	ACTAAA	-15	NA	138153981	138141360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138143975_138148868_138148996_138149466_138149559_138151106_138151232_138153891
ENSMUSG00000037007.18_2	chr5	-	2061	1	ISM	ENSMUSG00000037007.18	ENSMUST00000049393.15	6470	5	11906	2076	9061	-2076	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAAAAAAGTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	138142100	138140039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_138140000_138142100
ENSMUSG00000037010.8_0	chrX	-	3201	3	FSM	ENSMUSG00000037010.8	ENSMUST00000039026.8	3149	3	-58	6	-58	-6	multi-exon	FALSE	canonical	2	8	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGATTCTGCCCCATCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47123788	47114028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_47116585_47117170_47117343_47123315
ENSMUSG00000037012.19_0	chr10	-	3646	18	FSM	ENSMUSG00000037012.19	ENSMUST00000099691.11	4278	18	377	255	377	-2	multi-exon	FALSE	canonical	3	414	junction_15	35.8424078528779	1174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGTCGGAGTGGTGTT	NA	False	NA	-9	True	AGTAAA	-13	NA	62175944	62104888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
ENSMUSG00000037012.19_7	chr10	-	3714	19	NIC	ENSMUSG00000037012.19	novel	3639	20	NA	NA	378	-2	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	146.937964570423	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGTCGGAGTGGTGTT	NA	False	NA	-9	True	AGTAAA	-13	NA	62175943	62104888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62127753_62127823_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
ENSMUSG00000037013.18_1	chr18	-	2849	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	62	0	0	0	multi-exon	FALSE	canonical	3	595	junction_3	115.228382991837	1012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTCATTTGTTTCTT	NA	False	NA	-21	True	AATAAA	-15	NA	14815823	14758687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUSG00000037013.18_10	chr18	-	2744	9	NIC	ENSMUSG00000037013.18	novel	2911	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_3	296.915812984085	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTCATTTGTTTCTT	NA	False	NA	-21	True	AATAAA	-15	NA	14815823	14758687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_14760369_14766599_14766734_14769552_14769676_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUSG00000037013.18_3	chr18	-	2942	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	148	8	0	0	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTCATTTGTTTCTT	NA	False	NA	-21	True	AATAAA	-15	NA	14815823	14758687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUSG00000037016.12_16	chr3	-	4642	11	ISM	ENSMUSG00000037016.12	ENSMUST00000197519.5	3336	14	6992	-1911	6992	-3	3prime_fragment	FALSE	canonical	3	10	junction_8	4.85901224530254	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTATTTTGTTTTTTTAA	7488	False	NA	-6	True	AATAAA	-15	NA	53444697	53421361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_53424463_53426973_53427121_53427324_53427513_53428427_53428555_53429454_53429590_53429672_53429801_53431083_53431189_53433179_53433373_53442585_53442918_53443144_53443277_53444643
ENSMUSG00000037017.16_1	chr5	+	2241	5	FSM	ENSMUSG00000037017.16	ENSMUST00000110961.9	2310	5	17	52	-4	0	multi-exon	FALSE	canonical	3	61	junction_1	38.7774096607806	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCGTCTCAGGACTGT	NA	False	NA	3	True	AATAAA	-12	NA	138115194	138132475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138115270_138116097_138116183_138123239_138123953_138124715_138124909_138131300
ENSMUSG00000037017.16_12	chr5	+	1980	3	ISM	ENSMUSG00000037017.16	ENSMUST00000110959.2	2964	4	8035	6	8035	-3	3prime_fragment	FALSE	canonical	3	155	junction_2	0.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGTAGCGTCTCAGGAC	6389	False	NA	0	True	AATAAA	-9	NA	138123337	138132472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_138123953_138124715_138124909_138131300
ENSMUSG00000037017.16_13	chr5	+	1040	1	ISM	ENSMUSG00000037017.16	ENSMUST00000062350.15	2252	5	16268	3	16130	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGTAGCGTCTCAGGAC	NA	False	NA	0	True	AATAAA	-9	NA	138131432	138132472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_138131400_138132500
ENSMUSG00000037017.16_2	chr5	+	2157	4	FSM	ENSMUSG00000037017.16	ENSMUST00000110960.9	2204	4	-5	52	-5	0	multi-exon	FALSE	canonical	3	48	junction_1	50.6776303927307	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCGTCTCAGGACTGT	NA	False	NA	3	True	AATAAA	-12	NA	138115193	138132475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138115270_138123239_138123953_138124715_138124909_138131300
ENSMUSG00000037017.16_3	chr5	+	2139	4	FSM	ENSMUSG00000037017.16	ENSMUST00000080732.10	2134	4	-6	1	-6	0	multi-exon	FALSE	canonical	3	30	junction_1	59.1626759217517	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCGTCTCAGGACTGT	NA	False	NA	3	True	AATAAA	-12	NA	138115192	138132475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138115251_138123239_138123953_138124715_138124909_138131300
ENSMUSG00000037017.16_5	chr5	+	2222	5	FSM	ENSMUSG00000037017.16	ENSMUST00000062350.15	2252	5	30	0	-4	0	multi-exon	FALSE	canonical	3	41	junction_1	46.7566840141599	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCGTCTCAGGACTGT	NA	False	NA	3	True	AATAAA	-12	NA	138115194	138132475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138115251_138116097_138116183_138123239_138123953_138124715_138124909_138131300
ENSMUSG00000037020.17_0	chr7	-	4769	33	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	-5	2	combination_of_known_junctions	FALSE	canonical	1	41	junction_22	36.4423774608628	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCTTCCCTGTCTATAAA	NA	False	NA	-7	True	AATAAA	-18	NA	29979826	29939565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29939910_29940002_29940140_29940655_29941310_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
ENSMUSG00000037020.17_1	chr7	-	4712	33	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	-5	2	combination_of_known_junctions	FALSE	canonical	1	41	junction_22	30.5222607032556	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCTTCCCTGTCTATAAA	NA	False	NA	-7	True	AATAAA	-18	NA	29979826	29939565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
ENSMUSG00000037020.17_37	chr7	-	4714	33	FSM	ENSMUSG00000037020.17	ENSMUST00000108190.8	4742	33	25	3	2	2	multi-exon	TRUE	canonical	1	9	junction_7	40.394139716517	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCTTCCCTGTCTATAAA	NA	False	NA	-7	True	AATAAA	-18	NA	29979819	29939565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942458_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
ENSMUSG00000037022.4_1	chr8	-	1341	7	FSM	ENSMUSG00000037022.4	ENSMUST00000048718.4	5650	7	-4	4313	-4	-3	multi-exon	FALSE	canonical	3	29	junction_6	17.5214154679352	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTTTGTAGAGTTTCCC	NA	False	NA	-9	True	AATAAA	-14	NA	80021570	79994539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007805_80008284_80021542
ENSMUSG00000037022.4_3	chr8	-	1313	6	ISM	ENSMUSG00000037022.4	ENSMUST00000210231.2	1685	8	13025	0	13025	0	3prime_fragment	FALSE	canonical	2	9	junction_5	24.0083318870762	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	80008284	79994536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007809
ENSMUSG00000037022.4_6	chr8	-	351	2	ISM	ENSMUSG00000037022.4	ENSMUST00000210231.2	1685	8	25502	3	25502	-3	3prime_fragment	FALSE	canonical	3	84	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTTTGTAGAGTTTCCC	NA	False	NA	-9	True	AATAAA	-14	NA	79995807	79994539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_79994845_79995761
ENSMUSG00000037022.4_7	chr8	-	1315	6	ISM	ENSMUSG00000037022.4	ENSMUST00000048718.4	5650	7	13282	4312	13025	-2	3prime_fragment	FALSE	canonical	3	38	junction_5	16.7857082066858	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTTGTAGAGTTTCCCT	NA	False	NA	-8	True	AATAAA	-15	NA	80008284	79994538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007805
ENSMUSG00000037029.9_2	chr7	-	2798	2	FSM	ENSMUSG00000037029.9	ENSMUST00000062181.9	2029	2	5	-774	5	774	multi-exon	FALSE	canonical	3	29	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCATATTCTTAAATCCT	NA	False	NA	-7	True	ATTAAA	-11	NA	29869147	29859919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29862654_29869083
ENSMUSG00000037029.9_3	chr7	-	2946	2	NIC	ENSMUSG00000037029.9	novel	585	3	NA	NA	4	776	intron_retention	FALSE	canonical	3	14	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATATTCTTAAATCCTTC	NA	False	NA	-5	True	ATTAAA	-13	NA	29869148	29859917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29862799_29869083
ENSMUSG00000037029.9_5	chr7	-	2794	2	NNC	ENSMUSG00000037029.9	novel	2029	2	NA	NA	4	776	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATATTCTTAAATCCTTC	NA	False	NA	-5	True	ATTAAA	-13	NA	29869148	29859917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_29862654_29869090
ENSMUSG00000037029.9_6	chr7	-	1748	1	Genic_Genomic	ENSMUSG00000037029.9	novel	NA	NA	NA	NA	7451	776	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATATTCTTAAATCCTTC	NA	False	NA	-5	True	ATTAAA	-13	NA	29861665	29859917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_29859900_29861700
ENSMUSG00000037029.9_7	chr7	-	2794	2	NNC	ENSMUSG00000037029.9	novel	2029	2	NA	NA	4	774	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCATATTCTTAAATCCT	NA	False	NA	-7	True	ATTAAA	-11	NA	29869148	29859919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_29862649_29869083
ENSMUSG00000037031.11_0	chr10	-	1649	8	FSM	ENSMUSG00000037031.11	ENSMUST00000047883.11	3638	8	25	1964	25	349	multi-exon	TRUE	canonical	3	242	junction_7	11.6303613925986	279	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTTGTGTTGTTTGGA	4901	False	NA	-5	True	AATAAA	-22	NA	62067005	62023138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62023942_62024421_62024539_62025592_62025641_62027246_62027364_62029645_62029742_62037556_62037632_62038858_62039045_62066798
ENSMUSG00000037032.17_0	chr7	-	2632	14	FSM	ENSMUSG00000037032.17	ENSMUST00000189378.7	2878	14	265	-19	-34	0	multi-exon	FALSE	canonical	3	117	junction_6	14.1718113410527	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTTCCTGTGCTCA	NA	False	NA	-23	True	AATAAA	-16	NA	105230433	105207690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223624_105230341
ENSMUSG00000037032.17_14	chr7	-	2471	13	ISM	ENSMUSG00000037032.17	ENSMUST00000189378.7	2878	14	7144	-19	55	0	3prime_fragment	FALSE	canonical	3	117	junction_6	14.3701078631999	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTTCCTGTGCTCA	NA	False	NA	-23	True	AATAAA	-16	NA	105223554	105207690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888
ENSMUSG00000037033.10_0	chr3	-	1812	5	ISM	ENSMUSG00000037033.10	ENSMUST00000159989.2	3361	14	21217	5	21217	-5	3prime_fragment	FALSE	canonical	3	22	junction_4	3.53553390593274	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATCACAGTATTTCCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	144533901	144528388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_144529296_144530971_144531209_144531662_144531831_144533058_144533330_144533672
ENSMUSG00000037033.10_4	chr3	-	2389	6	NNC	ENSMUSG00000037033.10	novel	3361	14	NA	NA	20377	-7	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	5.74804314527997	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAATCACAGTATTTCC	NA	False	NA	NA	False	ATTAAA	-16	NA	144534741	144528390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_144529296_144530971_144531209_144531662_144531831_144533058_144533330_144533672_144533898_144534158
ENSMUSG00000037033.10_9	chr3	-	1540	4	NIC	ENSMUSG00000037033.10	novel	3361	14	NA	NA	21218	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	13.9124245031395	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATCACAGTATTTCCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	144533900	144528388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_144529296_144530971_144531209_144531662_144531831_144533672
ENSMUSG00000037035.6_0	chr1	-	3140	2	FSM	ENSMUSG00000037035.6	ENSMUST00000038765.6	4255	2	1116	-1	1116	1	multi-exon	FALSE	canonical	3	45	junction_1	0	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGCCTTGTGTGATGT	NA	False	NA	-2	True	AATAAA	-18	NA	119348862	119343193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_119345828_119348356
ENSMUSG00000037035.6_1	chr1	-	2234	1	ISM	ENSMUSG00000037035.6	ENSMUST00000038765.6	4255	2	4550	0	4550	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTGCCTTGTGTGATG	NA	False	NA	-3	True	AATAAA	-17	NA	119345428	119343194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_119343200_119345400
ENSMUSG00000037049.10_0	chr7	+	2366	6	FSM	ENSMUSG00000037049.10	ENSMUST00000046983.10	2412	6	38	8	-28	-8	multi-exon	FALSE	canonical	3	35	junction_2	5.53534100123922	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCCACCGTTCCTATTT	NA	False	NA	3	True	AATAAA	-13	NA	105203604	105207588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_105204045_105204428_105205202_105205713_105205886_105206124_105206202_105206556_105206703_105206830
ENSMUSG00000037049.10_2	chr7	+	1812	5	ISM	ENSMUSG00000037049.10	ENSMUST00000046983.10	2412	6	976	8	-355	-8	3prime_fragment	FALSE	canonical	3	35	junction_1	6.12372435695795	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCCACCGTTCCTATTT	NA	False	NA	3	True	AATAAA	-13	NA	105204542	105207588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_105205202_105205713_105205886_105206124_105206202_105206556_105206703_105206830
ENSMUSG00000037058.17_2	chr18	+	1444	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	25	6	1	-3	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	1602	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCGAGCTGGTGCTTGTGT	4665	False	NA	16	True	AATAAA	-10	NA	35731694	35750233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
ENSMUSG00000037060.4_1	chr7	-	667	2	FSM	ENSMUSG00000037060.4	ENSMUST00000047040.4	1662	2	471	524	471	-524	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCCAGACTCAATGAGAAA	NA	False	NA	NA	False	AATAAA	-14	NA	105131036	105129813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105130427_105130982
ENSMUSG00000037062.14_4	chr3	-	1711	9	FSM	ENSMUSG00000037062.14	ENSMUST00000163279.6	3961	9	26	2224	14	278	multi-exon	TRUE	canonical	3	282	junction_5	25.8444868395563	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCAGTGACTCATTTATT	NA	False	NA	-4	True	AATAAA	-14	NA	144426070	144396828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_144397294_144397660_144397890_144402614_144402716_144403138_144403229_144411273_144411367_144412358_144412493_144414993_144415123_144418347_144418490_144425742
ENSMUSG00000037062.14_6	chr3	-	2802	1	ISM	ENSMUSG00000037062.14	ENSMUST00000198254.5	5945	11	30604	7	7748	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCACTGTGCTGCTAGC	NA	False	NA	-17	True	AATAAA	-9	NA	144395480	144392678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_144392700_144395500
ENSMUSG00000037070.11_0	chr8	-	1667	2	FSM	ENSMUSG00000037070.11	ENSMUST00000049245.10	1695	2	20	8	1	0	multi-exon	FALSE	canonical	3	249	junction_1	0	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCAATTTTCTGTCTTG	NA	False	NA	NA	False	AGTAAA	-10	NA	79235507	79231905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_79233493_79235427
ENSMUSG00000037070.11_1	chr8	-	1594	1	NIC	ENSMUSG00000037070.11	novel	1695	2	NA	NA	2015	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTGTCTTGATTTCT	NA	False	NA	NA	False	AGTAAA	-16	NA	79233493	79231899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_79231900_79233500
ENSMUSG00000037070.11_2	chr8	-	1621	2	FSM	ENSMUSG00000037070.11	ENSMUST00000211719.2	1622	2	1	0	1	0	multi-exon	FALSE	canonical	3	608	junction_1	0	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCAATTTTCTGTCTTG	NA	False	NA	NA	False	AGTAAA	-10	NA	79235507	79231905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_79233447_79235427
ENSMUSG00000037071.4_0	chr19	-	4829	6	FSM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	1	2	1	-2	multi-exon	FALSE	canonical	3	439	junction_3	163.124001912655	1041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGAGCTTTTGTGTGTG	-3	True	NA	-7	True	AATAAA	-20	NA	44396147	44382895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
ENSMUSG00000037071.4_1	chr19	-	2589	1	ISM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	10666	0	9647	0	mono-exon	FALSE	NA	NA	NA	NA	NA	330	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	9846	False	NA	-5	True	AATAAA	-22	NA	44385482	44382893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_44382900_44385500
ENSMUSG00000037071.4_3	chr19	-	3969	3	ISM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	5943	2	4924	-2	3prime_fragment	FALSE	canonical	3	491	junction_1	193	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGAGCTTTTGTGTGTG	10005	False	NA	-7	True	AATAAA	-20	NA	44390205	44382895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_44386558_44388580_44388814_44390131
ENSMUSG00000037071.4_5	chr19	-	4322	5	ISM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	1135	0	116	0	3prime_fragment	FALSE	canonical	3	439	junction_3	180.524236599965	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	8575	False	NA	-5	True	AATAAA	-22	NA	44395013	44382893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925
ENSMUSG00000037072.17_0	chr3	+	1218	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	290	6	2	-6	multi-exon	FALSE	canonical	3	1325	junction_1	27.3404462289846	802	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTAGTCTGCTTTGTCCT	NA	False	NA	22	True	AATAAA	-24	NA	144276476	144303435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
ENSMUSG00000037075.8_1	chr15	+	2593	2	FSM	ENSMUSG00000037075.8	ENSMUST00000036904.7	4348	2	-254	2009	-254	-2009	multi-exon	FALSE	canonical	3	140	junction_1	0	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTTGAACAAATAGCTT	NA	False	NA	81	True	AATAAA	-21	NA	58760823	58772230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_58761344_58770157
ENSMUSG00000037075.8_6	chr15	+	1394	1	ISM	ENSMUSG00000037075.8	ENSMUST00000036904.7	4348	2	9759	2009	-1149	-2009	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTTGAACAAATAGCTT	NA	False	NA	81	True	AATAAA	-21	NA	58770836	58772230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_58770800_58772200
ENSMUSG00000037085.9_0	chr15	+	1606	1	FSM	ENSMUSG00000037085.9	ENSMUST00000036937.9	4454	1	5	2843	5	-2843	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATGAATTCTGCATTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	58744527	58746133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_58744500_58746100
ENSMUSG00000037089.12_0	chr17	+	1811	4	FSM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	94	1	4	0	multi-exon	FALSE	canonical	3	396	junction_3	17.6823829464998	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTGTTTTGGTTGGCA	NA	False	NA	8	True	ATTAAA	-18	NA	45874893	45878595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234
ENSMUSG00000037089.12_5	chr17	+	839	4	FSM	ENSMUSG00000037089.12	ENSMUST00000226086.2	850	4	9	2	5	-2	multi-exon	FALSE	canonical	3	37	junction_3	186.912338335976	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGGAGCCAGCTCTAAT	NA	False	NA	5	True	AATAAA	-14	NA	45874894	45876979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45876589
ENSMUSG00000037096.7_0	chr3	-	1268	1	FSM	ENSMUSG00000037096.7	ENSMUST00000036976.7	444	1	24	-848	24	848	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATTACTACAGTCATTAC	NA	False	NA	NA	False	AATAAA	-1	NA	78874082	78872814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_78872800_78874100
ENSMUSG00000037098.19_0	chr17	-	2487	6	ISM	ENSMUSG00000037098.19	ENSMUST00000148021.3	3333	12	24148	1	24148	-1	3prime_fragment	FALSE	canonical	3	64	junction_5	15.8316139417306	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGAGCCGGCTTCTTTC	NA	False	NA	-7	True	ATTAAA	-12	NA	26213286	26208016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26209860_26209949_26210091_26210231_26210388_26210636_26210775_26211555_26211638_26213159
ENSMUSG00000037098.19_1	chr17	-	5341	15	FSM	ENSMUSG00000037098.19	ENSMUST00000122103.9	5383	15	35	7	35	-1	multi-exon	FALSE	canonical	3	33	junction_10	23.7715530559927	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGAGCCGGCTTCTTTC	NA	False	NA	-7	True	ATTAAA	-12	NA	26288484	26208016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26209860_26209949_26210091_26210231_26210388_26210636_26210775_26211555_26211638_26213159_26213301_26216902_26217007_26223524_26223619_26227828_26227865_26230970_26231106_26232747_26232892_26234917_26235130_26243348_26243441_26255562_26255657_26286555
ENSMUSG00000037098.19_14	chr17	-	4910	13	NIC	ENSMUSG00000037098.19	novel	5249	14	NA	NA	35	-258	combination_of_known_splicesites	FALSE	canonical	3	10	junction_8	27.4634858595109	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACTGGAGCCCCGCCT	NA	False	NA	NA	False	NA	NA	NA	26288484	26208276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26209860_26209949_26210091_26210231_26210388_26210636_26210775_26211555_26211638_26213159_26213301_26216902_26217007_26223524_26223619_26232747_26232892_26234917_26235130_26243348_26243441_26255562_26255657_26286555
ENSMUSG00000037098.19_2	chr17	-	5210	14	FSM	ENSMUSG00000037098.19	ENSMUST00000120691.9	5249	14	36	3	26	-3	multi-exon	FALSE	canonical	3	56	junction_9	17.5610515785467	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGCACACGGAGCCGGCTT	NA	False	NA	-12	True	ATTAAA	-7	NA	26288493	26208021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26209860_26209949_26210091_26210231_26210388_26210636_26210775_26211555_26211638_26213159_26213301_26216902_26217007_26223524_26223619_26227828_26227865_26232747_26232892_26234917_26235130_26243348_26243441_26255562_26255657_26286555
ENSMUSG00000037098.19_35	chr17	-	2285	1	NIC	ENSMUSG00000037098.19	novel	5383	15	NA	NA	12	-30978	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATGTAATCAGTTGAAAA	NA	False	NA	NA	False	ATTAAA	-20	NA	26288507	26286222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26286200_26288500
ENSMUSG00000037098.19_6	chr17	-	1486	1	ISM	ENSMUSG00000037098.19	ENSMUST00000118828.8	3271	12	31332	7	27932	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGAGCCGGCTTCTTTC	NA	False	NA	-7	True	ATTAAA	-12	NA	26209502	26208016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26208000_26209500
ENSMUSG00000037101.17_0	chr8	+	1192	3	FSM	ENSMUSG00000037101.17	ENSMUST00000124713.2	673	3	32	-551	32	-1	multi-exon	FALSE	canonical	2	2	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGTTATTTTCATTTC	NA	False	NA	NA	False	AATAAA	-22	NA	79117642	79120954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_79118107_79119699_79119767_79120293
ENSMUSG00000037103.9_1	chr8	-	2202	13	FSM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	-6	3	-1	-3	multi-exon	FALSE	canonical	3	169	junction_7	21.0218140669797	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGCCTGGTGTCCTGTTC	9256	False	NA	-6	True	ACTAAA	-14	NA	84831398	84823703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
ENSMUSG00000037103.9_10	chr8	-	2310	13	FSM	ENSMUSG00000037103.9	ENSMUST00000041367.9	2312	13	-2	4	-1	-4	multi-exon	FALSE	canonical	3	17	junction_1	56.6688112339289	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTGCCTGGTGTCCTGTT	9261	False	NA	-7	True	ACTAAA	-13	NA	84831393	84823704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84824138_84824251_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
ENSMUSG00000037104.10_0	chr17	+	3440	2	FSM	ENSMUSG00000037104.10	ENSMUST00000234803.2	978	2	-77	-2385	-65	-1212	multi-exon	FALSE	canonical	3	48	junction_1	0	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTGCCGTTTTATACAT	NA	False	NA	6	True	AATAAA	-20	NA	87415041	87444055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_87415476_87441049
ENSMUSG00000037104.10_4	chr17	+	3552	1	ISM	ENSMUSG00000037104.10	ENSMUST00000041369.8	4648	3	26315	294	26136	-294	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTTTGTGTACAATATAA	NA	False	NA	NA	False	NA	NA	NA	87441421	87444973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_87441400_87445000
ENSMUSG00000037108.14_0	chr5	+	2155	17	FSM	ENSMUSG00000037108.14	ENSMUST00000035852.14	2222	17	55	12	55	-12	multi-exon	FALSE	canonical	3	53	junction_4	16.2498798072478	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTACTCCTGAGCTGTGCT	7132	False	NA	20	True	AATAAA	-13	NA	137786114	137820871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137796236_137797769_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815154_137815239_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
ENSMUSG00000037108.14_1	chr5	+	2073	16	NIC	ENSMUSG00000037108.14	novel	2222	17	NA	NA	53	-12	combination_of_known_junctions	FALSE	canonical	2	8	junction_11	25.4046364972136	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTACTCCTGAGCTGTGCT	7130	False	NA	20	True	AATAAA	-13	NA	137786112	137820871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137796236_137797769_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
ENSMUSG00000037108.14_6	chr5	+	3706	16	NIC	ENSMUSG00000037108.14	novel	2222	17	NA	NA	42	-8	intron_retention	FALSE	canonical	3	62	junction_3	14.4612893231858	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCTGAGCTGTGCTTTGT	7119	False	NA	24	True	AATAAA	-17	NA	137786101	137820875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815154_137815239_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
ENSMUSG00000037110.21_0	chr2	-	2361	1	ISM	ENSMUSG00000037110.21	ENSMUST00000109986.9	11030	41	268332	1433	17703	-1433	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCATCTAATAAAAATATT	NA	False	NA	-26	True	AATAAA	-10	NA	146085592	146083231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_146083200_146085600
ENSMUSG00000037110.21_1	chr2	-	4455	7	ISM	ENSMUSG00000037110.21	ENSMUST00000109986.9	11030	41	177388	1432	53067	-1432	3prime_fragment	FALSE	canonical	3	25	junction_1	4.78423336480244	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCATCTAATAAAAATATTG	NA	False	NA	-25	True	AATAAA	-11	NA	146176536	146083230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_146086956_146090088_146090129_146102285_146102408_146156842_146156971_146169297_146169457_146175335_146175492_146176411
ENSMUSG00000037110.21_16	chr2	-	6218	40	NIC	ENSMUSG00000037110.21	novel	3095	19	NA	NA	-11	-29	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	6.39896441325705	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAACCAATTCAGTTCTT	NA	False	NA	NA	False	AATAAA	-1	NA	146353957	146100512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_146100865_146102285_146102408_146156842_146156971_146169297_146169457_146175335_146175492_146176411_146176536_146182298_146182371_146183897_146184670_146187305_146187490_146188628_146188767_146189035_146189105_146190367_146190479_146195090_146195200_146199007_146199067_146199876_146200006_146203310_146203440_146229147_146229304_146229526_146229626_146230410_146230605_146246782_146246960_146248261_146248353_146252092_146252191_146253965_146254080_146254653_146254789_146263512_146263678_146266536_146266775_146270524_146270637_146273737_146273887_146276699_146276838_146277758_146277927_146285703_146285932_146289195_146289396_146291129_146291269_146292371_146292488_146293602_146293781_146295328_146295373_146302633_146302692_146321296_146321350_146327040_146327152_146353713
ENSMUSG00000037110.21_18	chr2	-	6400	38	ISM	ENSMUSG00000037110.21	ENSMUST00000109986.9	11030	41	-27	74382	-5	46425	5prime_fragment	FALSE	canonical	3	23	junction_23	5.31505572736096	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCATAGTCTTCTCCTGC	NA	False	NA	NA	False	ATTAAA	-21	NA	146353951	146156180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_146156971_146169297_146169457_146175335_146175492_146176411_146176536_146182298_146182371_146183897_146184670_146187305_146187490_146188628_146188767_146189035_146189105_146190367_146190479_146195090_146195200_146199007_146199067_146199876_146200006_146203310_146203440_146229147_146229304_146229526_146229626_146230410_146230605_146246782_146246960_146248261_146248353_146252092_146252191_146253965_146254080_146254653_146254789_146263512_146263678_146266536_146266775_146270524_146270637_146273737_146273887_146276699_146276838_146277758_146277927_146285703_146285932_146289195_146289396_146291129_146291269_146292371_146292488_146293602_146293781_146295328_146295373_146302633_146302692_146321296_146321350_146327040_146327152_146353713
ENSMUSG00000037110.21_2	chr2	-	8809	41	FSM	ENSMUSG00000037110.21	ENSMUST00000109986.9	11030	41	-33	2254	-11	1012	multi-exon	FALSE	canonical	3	23	junction_26	5.33291665038935	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTTGGATGTTTTAA	NA	False	NA	-2	True	NA	NA	NA	146353957	146084052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_146086956_146090088_146090129_146102285_146102408_146156842_146156971_146169297_146169457_146175335_146175492_146176411_146176536_146182298_146182371_146183897_146184670_146187305_146187490_146188628_146188767_146189035_146189105_146190367_146190479_146195090_146195200_146199007_146199067_146199876_146200006_146203310_146203440_146229147_146229304_146229526_146229626_146230410_146230605_146246782_146246960_146248261_146248353_146252092_146252191_146253965_146254080_146254653_146254789_146263512_146263678_146266536_146266775_146270524_146270637_146273737_146273887_146276699_146276838_146277758_146277927_146285703_146285932_146289195_146289396_146291129_146291269_146292371_146292488_146293602_146293781_146295328_146295373_146302633_146302692_146321296_146321350_146327040_146327152_146353713
ENSMUSG00000037110.21_6	chr2	-	3410	6	ISM	ENSMUSG00000037110.21	ENSMUST00000228797.2	8245	42	178836	-977	54175	977	3prime_fragment	FALSE	canonical	3	25	junction_1	4.71593044902064	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATTAAAAAAATAAAAA	NA	False	NA	-37	True	NA	NA	NA	146175428	146084087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_146086956_146090088_146090129_146102285_146102408_146156842_146156971_146169297_146169457_146175335
ENSMUSG00000037110.21_7	chr2	-	4223	9	ISM	ENSMUSG00000037110.21	ENSMUST00000228797.2	8245	42	169848	-1012	45187	1012	3prime_fragment	FALSE	canonical	3	25	junction_1	4.32290411644765	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTTGGATGTTTTAA	NA	False	NA	-2	True	NA	NA	NA	146184416	146084052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_146086956_146090088_146090129_146102285_146102408_146156842_146156971_146169297_146169457_146175335_146175492_146176411_146176536_146182298_146182371_146183897
ENSMUSG00000037111.10_0	chr3	-	3402	1	ISM	ENSMUSG00000037111.10	ENSMUST00000037141.9	7411	8	42153	6	17921	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATCTCCTGTTGTCAGTT	NA	False	NA	-6	True	ATTAAA	-9	NA	51426147	51422745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_51422700_51426100
ENSMUSG00000037111.10_2	chr3	-	1871	8	FSM	ENSMUSG00000037111.10	ENSMUST00000037141.9	7411	8	220	5320	220	-5320	multi-exon	FALSE	canonical	3	18	junction_2	3.23879544250132	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTGTAGCAGCGTACA	NA	False	NA	NA	False	NA	NA	NA	51468080	51428059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_51428909_51434265_51434424_51437491_51437610_51440395_51440478_51443886_51444077_51450052_51450255_51457655_51457786_51467938
ENSMUSG00000037112.17_0	chr9	-	7288	16	NNC	ENSMUSG00000037112.17	novel	4107	16	NA	NA	-14	3152	intron_retention	FALSE	canonical	3	11	junction_8	13.1969693490589	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGGTGATATGAA	NA	False	NA	-5	True	AATAAA	-15	NA	50920340	50800948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_50805382_50806643_50807262_50807943_50808036_50808672_50808784_50809487_50809652_50809781_50810067_50810619_50810849_50818706_50818797_50824683_50824837_50826741_50826963_50828313_50828438_50828827_50828953_50846715_50846878_50906907_50906972_50909799_50909917_50920040
ENSMUSG00000037112.17_1	chr9	-	7352	16	FSM	ENSMUSG00000037112.17	ENSMUST00000176663.8	4107	16	-99	-3146	-9	3146	multi-exon	FALSE	canonical	3	21	junction_1	10.4796098315835	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCTAAAAGCCTGGTGA	NA	False	NA	-11	True	AATAAA	-9	NA	50920335	50800954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50805382_50806643_50807262_50807943_50808036_50808672_50808784_50809487_50809652_50809781_50810067_50810619_50810849_50818706_50818872_50824683_50824837_50826741_50826963_50828313_50828438_50828827_50828953_50846715_50846878_50906907_50906972_50909799_50909917_50920040
ENSMUSG00000037112.17_3	chr9	-	8549	15	NNC	ENSMUSG00000037112.17	novel	5369	15	NA	NA	-13	3152	intron_retention	FALSE	canonical	3	11	junction_7	12.2017479510611	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGGTGATATGAA	NA	False	NA	-5	True	AATAAA	-15	NA	50920339	50800948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_50807262_50807943_50808036_50808672_50808784_50809487_50809652_50809781_50810067_50810619_50810849_50818706_50818797_50824683_50824837_50826741_50826963_50828313_50828438_50828827_50828953_50846715_50846878_50906907_50906972_50909799_50909917_50920040
ENSMUSG00000037112.17_4	chr9	-	3522	16	FSM	ENSMUSG00000037112.17	ENSMUST00000041375.11	3552	16	28	2	-19	-2	multi-exon	FALSE	canonical	2	11	junction_1	12.14907403879	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTGTGGTACTCTTTT	NA	False	NA	NA	False	AAAAAG	-4	NA	50920345	50804102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50804690_50806643_50807262_50807943_50808036_50808672_50808784_50809487_50809652_50809781_50810067_50810619_50810849_50818706_50818872_50824683_50824837_50826741_50826963_50828313_50828438_50828827_50828953_50846715_50846878_50906907_50906972_50909799_50909917_50920040
ENSMUSG00000037112.17_6	chr9	-	5462	15	FSM	ENSMUSG00000037112.17	ENSMUST00000176824.8	5369	15	-96	3	-6	-3	multi-exon	FALSE	canonical	3	33	junction_7	8.64875831597596	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATATGTGTGGTACTCTTT	NA	False	NA	NA	False	AAAAAG	-3	NA	50920332	50804103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50807262_50807943_50808036_50808672_50808784_50809487_50809652_50809781_50810067_50810619_50810849_50818706_50818872_50824683_50824837_50826741_50826963_50828313_50828438_50828827_50828953_50846715_50846878_50906907_50906972_50909799_50909917_50920040
ENSMUSG00000037119.5_1	chr15	+	5542	24	FSM	ENSMUSG00000037119.5	ENSMUST00000037270.5	5560	24	12	6	12	-6	multi-exon	FALSE	canonical	3	296	junction_5	31.8077875639983	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGTTACTGTGGAGAGT	NA	False	NA	10	True	AATAAA	-10	NA	58287328	58329583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_58287627_58292047_58292133_58293594_58293747_58295169_58295228_58296045_58296114_58296625_58296740_58298442_58298534_58298902_58298966_58301840_58301948_58302027_58302067_58302510_58302624_58303054_58303171_58304363_58304477_58304742_58304830_58306512_58306646_58313426_58313576_58314680_58314816_58315009_58315124_58319434_58319508_58320191_58320342_58321779_58321885_58322386_58322511_58324831_58324902_58326598
ENSMUSG00000037119.5_7	chr15	+	5422	23	NIC	ENSMUSG00000037119.5	novel	5560	24	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	3	25	junction_16	73.4212486414261	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTACTGTGGAGAGTGTC	NA	False	NA	13	True	AATAAA	-13	NA	58287316	58329586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_58287627_58292047_58292133_58293594_58293747_58295169_58295228_58296045_58296114_58296625_58296740_58298442_58298534_58298902_58298966_58301840_58301948_58302027_58302067_58302510_58302624_58303054_58303171_58304363_58304477_58304742_58304830_58306512_58306646_58313426_58313576_58315009_58315124_58319434_58319508_58320191_58320342_58321779_58321885_58322386_58322511_58324831_58324902_58326598
ENSMUSG00000037119.5_74	chr15	+	2255	1	ISM	ENSMUSG00000037119.5	ENSMUST00000037270.5	5560	24	40015	3	12750	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTACTGTGGAGAGTGTC	NA	False	NA	13	True	AATAAA	-13	NA	58327331	58329586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_58327300_58329600
ENSMUSG00000037129.8_1	chr9	+	1772	3	NNC	ENSMUSG00000037129.8	novel	3245	13	NA	NA	26003	-3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	2.5	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAAGTTGTTGGGTGCTT	NA	False	NA	NA	False	AATAAA	-13	NA	45256400	45258876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_45256433_45256523_45256677_45257289
ENSMUSG00000037129.8_3	chr9	+	1738	2	ISM	ENSMUSG00000037129.8	ENSMUST00000034597.8	3245	13	26124	7	26124	-7	3prime_fragment	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAAAGAAGTTGTTGGGT	NA	False	NA	NA	False	AATAAA	-9	NA	45256521	45258872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_45256677_45257289
ENSMUSG00000037134.18_0	chr8	+	2759	12	FSM	ENSMUSG00000037134.18	ENSMUST00000056237.15	2781	12	19	3	6	-2	multi-exon	FALSE	canonical	3	124	junction_5	20.627751506924	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTAAAGTGTATGTAACAT	NA	False	NA	10	True	AATAAA	-15	NA	78276044	78307964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435_78287604_78289042_78289146_78290604_78290712_78291582_78291776_78294803_78294988_78298637_78299356_78303966_78304121_78307254_78307378_78307662
ENSMUSG00000037134.18_1	chr8	+	2734	12	FSM	ENSMUSG00000037134.18	ENSMUST00000210040.2	2688	12	-46	0	1	0	multi-exon	FALSE	canonical	3	14	junction_4	44.8630606944737	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGTGTATGTAACATTA	NA	False	NA	12	True	AATAAA	-17	NA	78276036	78307966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435_78287604_78289077_78289146_78290604_78290712_78291582_78291776_78294803_78294988_78298637_78299356_78303966_78304121_78307254_78307378_78307662
ENSMUSG00000037134.18_3	chr8	+	2633	11	NIC	ENSMUSG00000037134.18	novel	2781	12	NA	NA	-14	-1	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	49.1822122316595	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAAGTGTATGTAACATT	NA	False	NA	11	True	AATAAA	-16	NA	78276068	78307965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435_78287604_78290604_78290712_78291582_78291776_78294803_78294988_78298637_78299356_78303966_78304121_78307254_78307378_78307662
ENSMUSG00000037138.19_2	chr1	-	5977	23	NNC	ENSMUSG00000037138.19	novel	6010	23	NA	NA	-257	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	2.15322168769582	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGTGTGCAGCACTGCG	NA	False	NA	-2	True	AATATA	-13	NA	38666539	38216408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_38218652_38220340_38220565_38220695_38220746_38224405_38224500_38226016_38226089_38230251_38230389_38232646_38232711_38242891_38243020_38243970_38244173_38246986_38247112_38248633_38249729_38257343_38257537_38291721_38291763_38308790_38308843_38359192_38359245_38368952_38368990_38380801_38380883_38445576_38445625_38573986_38574373_38574491_38574805_38575906_38576028_38666169_38666326_38666476
ENSMUSG00000037139.16_1	chr4	+	5077	33	ISM	ENSMUSG00000037139.16	ENSMUST00000105854.2	5575	37	5808	7	5808	-7	3prime_fragment	FALSE	canonical	1	1	junction_3	3.626616019101	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGAGGCAGCACCCGTG	NA	False	NA	NA	False	AATAAA	-22	NA	135492833	135542868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135493013_135497981_135498078_135498842_135498932_135501075_135501121_135501591_135501733_135502855_135503018_135503645_135503788_135505347_135505548_135506663_135506718_135507110_135507239_135510325_135510510_135513124_135513300_135514709_135514832_135515205_135515394_135515598_135515726_135516844_135517024_135522392_135522508_135523591_135523749_135524274_135524385_135524764_135524810_135525605_135525743_135528312_135528458_135528652_135528713_135529026_135529095_135530518_135530630_135533348_135533437_135534194_135534234_135534479_135534589_135536106_135536271_135538059_135538097_135538245_135538269_135539754_135539811_135541466
ENSMUSG00000037139.16_17	chr4	+	1809	5	ISM	ENSMUSG00000037139.16	ENSMUST00000145304.8	2551	13	10479	7	8025	-7	3prime_fragment	FALSE	canonical	3	9	junction_1	2.1650635094611	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGAGGCAGCACCCGTG	NA	False	NA	NA	False	AATAAA	-22	NA	135535979	135542868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135536271_135538059_135538097_135538245_135538269_135539754_135539811_135541466
ENSMUSG00000037139.16_23	chr4	+	4431	26	ISM	ENSMUSG00000037139.16	ENSMUST00000105854.2	5575	37	18115	6	18115	-6	3prime_fragment	FALSE	canonical	2	3	junction_6	3.00026665481587	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGAGGCAGCACCCGTGG	9143	False	NA	NA	False	AATAAA	-23	NA	135505140	135542869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135505548_135506663_135506718_135507110_135507239_135510325_135510510_135513124_135513300_135514709_135514832_135515205_135515394_135515598_135515726_135516844_135517024_135522392_135522508_135523591_135523749_135524274_135524385_135524764_135524810_135525605_135525743_135528312_135528458_135528652_135528713_135529026_135529095_135530518_135530630_135533348_135533437_135534194_135534234_135534479_135534589_135536106_135536271_135538059_135538097_135538245_135538269_135539754_135539811_135541466
ENSMUSG00000037139.16_5	chr4	+	4624	28	ISM	ENSMUSG00000037139.16	ENSMUST00000105854.2	5575	37	15733	7	15733	-7	3prime_fragment	FALSE	canonical	2	3	junction_8	2.88793906512858	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGAGGCAGCACCCGTG	6761	False	NA	NA	False	AATAAA	-22	NA	135502758	135542868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135503018_135503645_135503788_135505347_135505548_135506663_135506718_135507110_135507239_135510325_135510510_135513124_135513300_135514709_135514832_135515205_135515394_135515598_135515726_135516844_135517024_135522392_135522508_135523591_135523749_135524274_135524385_135524764_135524810_135525605_135525743_135528312_135528458_135528652_135528713_135529026_135529095_135530518_135530630_135533348_135533437_135534194_135534234_135534479_135534589_135536106_135536271_135538059_135538097_135538245_135538269_135539754_135539811_135541466
ENSMUSG00000037148.9_0	chr8	-	3056	23	FSM	ENSMUSG00000037148.9	ENSMUST00000076316.6	3084	23	24	4	24	-4	multi-exon	FALSE	canonical	3	15	junction_7	5.93072961101822	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTATTTGGTGTGTCCGGCC	NA	False	NA	NA	False	AATAAA	-10	NA	78244558	77976998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_77977637_77983954_77984047_77985685_77985839_78003776_78003937_78037359_78037511_78071268_78071429_78072900_78073007_78078242_78078302_78085175_78085264_78091714_78091790_78109353_78109420_78111379_78111426_78115282_78115365_78136176_78136272_78137650_78137758_78140126_78140257_78146700_78146806_78147265_78147377_78152958_78153061_78159368_78159441_78177321_78177384_78177456_78177553_78244258
ENSMUSG00000037148.9_1	chr8	-	2900	22	FSM	ENSMUSG00000037148.9	ENSMUST00000210922.2	2208	22	-141	-551	29	-2	multi-exon	FALSE	canonical	0	0	junction_2	8.01868566087306	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGGTGTGTCCGGCCTA	NA	False	NA	NA	False	AATAAA	-12	NA	78244553	77976996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_77977637_77983954_77984047_78003776_78003937_78037359_78037511_78071268_78071429_78072900_78073007_78078242_78078302_78085175_78085264_78091714_78091790_78109353_78109420_78111379_78111426_78115282_78115365_78136176_78136272_78137650_78137758_78140126_78140257_78146700_78146806_78147265_78147377_78152958_78153061_78159368_78159441_78177321_78177384_78177456_78177553_78244258
ENSMUSG00000037149.11_0	chr12	-	2470	26	FSM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	37	2335	-13	-2335	multi-exon	FALSE	canonical	3	1685	junction_15	174.121171601847	3044	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCATGAAGGCTTGTGT	NA	False	NA	-12	True	AATAAA	-13	NA	13299177	13269308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
ENSMUSG00000037151.9_1	chr10	+	3195	5	FSM	ENSMUSG00000037151.9	ENSMUST00000049242.9	3216	5	20	1	20	-1	multi-exon	FALSE	canonical	3	23	junction_1	4.84767985741633	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCGCTGGTGCTTGGTGTC	1794	False	NA	2	True	AATAAA	-19	NA	61311599	61418569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_61311669_61318114_61318262_61362838_61362989_61383826_61383995_61415908
ENSMUSG00000037151.9_2	chr10	+	3440	4	ISM	ENSMUSG00000037151.9	ENSMUST00000049242.9	3216	5	21	31669	21	-31669	5prime_fragment	FALSE	canonical	3	23	junction_1	4.92160768674447	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	1795	False	NA	NA	False	NA	NA	NA	61311600	61386901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_61311669_61318114_61318262_61362838_61362989_61383826
ENSMUSG00000037151.9_3	chr10	+	3065	4	NIC	ENSMUSG00000037151.9	novel	3216	5	NA	NA	1	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	12.9614813968157	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCCGCTGGTGCTTGGTG	1775	False	NA	0	True	AATAAA	-17	NA	61311580	61418567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_61311669_61362838_61362989_61383826_61383995_61415908
ENSMUSG00000037151.9_5	chr10	+	2956	3	NIC	ENSMUSG00000037151.9	novel	3216	5	NA	NA	6535	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	17.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCCGCTGGTGCTTGGTG	8309	False	NA	0	True	AATAAA	-17	NA	61318114	61418567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_61318262_61362838_61362989_61415908
ENSMUSG00000037151.9_6	chr10	+	2383	1	ISM	ENSMUSG00000037151.9	ENSMUST00000049242.9	3216	5	104607	1	104607	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCGCTGGTGCTTGGTGTC	NA	False	NA	2	True	AATAAA	-19	NA	61416186	61418569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_61416200_61418600
ENSMUSG00000037152.12_1	chr3	-	400	4	FSM	ENSMUSG00000037152.12	ENSMUST00000038108.12	1249	4	50	799	26	2	multi-exon	FALSE	canonical	3	5471	junction_1	421.328322755017	845	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGACGGAGTCACTGGTC	NA	False	NA	-30	True	AATAAA	-20	NA	51316359	51312896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_51313041_51314756_51314834_51315565_51315670_51316284
ENSMUSG00000037161.15_0	chr3	-	1207	4	FSM	ENSMUSG00000037161.15	ENSMUST00000038154.12	1232	4	21	4	-1	-4	multi-exon	FALSE	canonical	3	186	junction_2	9.84321537348893	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTTTCTAGTCTTTCT	NA	False	NA	-4	True	AATAAA	-13	NA	51303948	51295836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303847
ENSMUSG00000037161.15_1	chr3	-	1383	4	FSM	ENSMUSG00000037161.15	ENSMUST00000108046.8	1409	4	22	4	-1	-4	multi-exon	FALSE	canonical	0	0	junction_3	91.1604202613295	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTTTCTAGTCTTTCT	NA	False	NA	-4	True	AATAAA	-13	NA	51303925	51295836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303648
ENSMUSG00000037166.6_0	chr7	+	537	4	FSM	ENSMUSG00000037166.6	ENSMUST00000048187.6	950	4	3	410	3	-410	multi-exon	FALSE	canonical	3	93	junction_2	2.05480466765633	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTGTCCGGATTTTCC	4010	False	NA	8	True	NA	NA	NA	28988739	28992816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28988961_28990934_28991016_28991475_28991509_28992614
ENSMUSG00000037169.16_0	chr12	-	2586	3	FSM	ENSMUSG00000037169.16	ENSMUST00000043396.15	2674	3	80	8	-9	-5	multi-exon	FALSE	canonical	3	794	junction_2	66.5	1723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGCAAGGCGATGTTTTC	NA	False	NA	-26	True	AATAAA	-12	NA	12991835	12986101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_12987612_12989610_12990488_12991636
ENSMUSG00000037169.16_2	chr12	-	2221	2	FSM	ENSMUSG00000037169.16	ENSMUST00000130990.2	2522	2	296	5	296	-5	multi-exon	FALSE	canonical	3	927	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGCAAGGCGATGTTTTC	NA	False	NA	-26	True	AATAAA	-12	NA	12990321	12986101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_12987612_12989610
ENSMUSG00000037171.7_1	chr10	+	1778	3	FSM	ENSMUSG00000037171.7	ENSMUST00000049339.7	2095	3	314	3	314	-3	multi-exon	FALSE	canonical	3	289	junction_2	2.5	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCTGTCTCACAATGT	NA	False	NA	17	True	ATTAAA	-14	NA	61254064	61261114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_61254275_61258760_61259477_61260262
ENSMUSG00000037171.7_5	chr10	+	1457	2	ISM	ENSMUSG00000037171.7	ENSMUST00000049339.7	2095	3	5121	3	5121	-3	3prime_fragment	FALSE	canonical	3	289	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCTGTCTCACAATGT	NA	False	NA	17	True	ATTAAA	-14	NA	61258871	61261114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_61259477_61260262
ENSMUSG00000037172.15_0	chr6	-	3395	1	ISM	ENSMUSG00000037172.15	ENSMUST00000101492.10	6742	9	31363	3	26636	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCTGTGTGCTGTGATC	NA	False	NA	NA	False	ATTAAA	-16	NA	40381706	40378311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_40378300_40381700
ENSMUSG00000037172.15_1	chr6	-	6740	9	FSM	ENSMUSG00000037172.15	ENSMUST00000101492.10	6742	9	-5	7	-5	-7	multi-exon	FALSE	canonical	3	15	junction_1	5.09748712602592	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGAGCCTGTGTGCTGT	NA	False	NA	NA	False	ATTAAA	-12	NA	40413074	40378315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_40383869_40385202_40385272_40385992_40386144_40386275_40386408_40388539_40388679_40395425_40395580_40399659_40399819_40400657_40400758_40412791
ENSMUSG00000037174.19_1	chr3	-	1153	1	ISM	ENSMUSG00000037174.19	ENSMUST00000194641.6	5919	10	84280	2511	3858	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGTGGTTTTGGTCTCT	NA	False	NA	-7	True	AATATA	-13	NA	51163804	51162651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_51162700_51163800
ENSMUSG00000037174.19_12	chr3	-	3499	11	NIC	ENSMUSG00000037174.19	novel	5919	10	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	92.5656523771102	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTATCTTGTGGTTTTG	NA	False	NA	-13	True	AATATA	-7	NA	51248078	51162657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51207203_51207307_51215470_51215637_51230642_51230873_51233368_51233457_51247834
ENSMUSG00000037174.19_29	chr3	-	3459	11	NIC	ENSMUSG00000037174.19	novel	3353	10	NA	NA	0	-11	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	93.351004279547	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAATTTATCTTGTGG	NA	False	NA	-18	True	AATATA	-2	NA	51248079	51162662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51207203_51207307_51215470_51215637_51230642_51230873_51233368_51233457_51247834
ENSMUSG00000037174.19_3	chr3	-	3412	10	FSM	ENSMUSG00000037174.19	ENSMUST00000194641.6	5919	10	-10	2517	-10	-6	multi-exon	FALSE	canonical	3	55	junction_9	82.9231385897823	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTATCTTGTGGTTTTG	NA	False	NA	-13	True	AATATA	-7	NA	51248094	51162657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51215470_51215637_51230642_51230873_51233368_51233457_51247834
ENSMUSG00000037174.19_4	chr3	-	2872	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108051.8	2514	7	70	-428	0	-6	multi-exon	FALSE	canonical	3	154	junction_6	34.1987654098149	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTATCTTGTGGTTTTG	NA	False	NA	-13	True	AATATA	-7	NA	51184865	51162657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51184625
ENSMUSG00000037174.19_5	chr3	-	2897	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108053.9	2611	7	142	-428	-9	-6	multi-exon	FALSE	canonical	3	85	junction_5	57.3626378596925	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTATCTTGTGGTTTTG	NA	False	NA	-13	True	AATATA	-7	NA	51184854	51162657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51184625
ENSMUSG00000037174.19_6	chr3	-	3383	10	FSM	ENSMUSG00000037174.19	ENSMUST00000062009.14	3353	10	-31	1	-12	-1	multi-exon	FALSE	canonical	3	55	junction_9	81.5267887503894	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTTGTGGTTTTGGTCTC	NA	False	NA	-8	True	AATATA	-12	NA	51248096	51162652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51215470_51215637_51230642_51230873_51233368_51233457_51247834
ENSMUSG00000037185.10_2	chr15	-	3198	9	FSM	ENSMUSG00000037185.10	ENSMUST00000077196.6	3067	9	-137	6	-137	2	multi-exon	FALSE	canonical	1	1	junction_1	2.06155281280883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAATGTTGCTGTGCACT	6608	False	NA	NA	False	AATAAA	-19	NA	101268180	101246201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_101247921_101248049_101248106_101248876_101249098_101249554_101249681_101250057_101250223_101256527_101256624_101257360_101257422_101262090_101262300_101267635
ENSMUSG00000037185.10_3	chr15	-	2805	8	FSM	ENSMUSG00000037185.10	ENSMUST00000230909.2	2811	8	6	0	6	0	multi-exon	FALSE	canonical	1	1	junction_1	2.05038572777248	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGATAATGTTGCTGTGCA	8293	False	NA	NA	False	AATAAA	-17	NA	101262453	101246203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_101247921_101248049_101248106_101248876_101249098_101249554_101249681_101250057_101250223_101256527_101256624_101257360_101257422_101262090
ENSMUSG00000037188.8_0	chr4	-	2712	16	NNC	ENSMUSG00000037188.8	novel	2789	16	NA	NA	72	-2	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_11	58.2178285025778	117	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCGGTTTTCATGCGCT	NA	False	NA	-4	True	AATAAA	-18	NA	135300869	135269200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279191_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479_135288667_135300718
ENSMUSG00000037188.8_2	chr4	-	2714	16	FSM	ENSMUSG00000037188.8	ENSMUST00000105855.2	2789	16	73	2	73	-2	multi-exon	FALSE	canonical	3	38	junction_6	62.4956531821747	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCGGTTTTCATGCGCT	NA	False	NA	-4	True	AATAAA	-18	NA	135300868	135269200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279194_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479_135288667_135300718
ENSMUSG00000037188.8_3	chr4	-	1032	3	ISM	ENSMUSG00000037188.8	ENSMUST00000105855.2	2789	16	25136	1	25136	-1	3prime_fragment	FALSE	canonical	3	271	junction_1	2	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGGTTTTCATGCGCTT	NA	False	NA	-3	True	AATAAA	-19	NA	135275805	135269199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_135270085_135273553_135273619_135275723
ENSMUSG00000037190.13_0	chr9	-	1102	4	FSM	ENSMUSG00000037190.13	ENSMUST00000195235.6	1162	4	56	4	-10	2	multi-exon	FALSE	canonical	3	104	junction_2	4.08248290463863	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTGTCGGGAGGAGCA	NA	False	NA	-24	True	AATAAA	-15	NA	107419336	107416777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107417585_107418201_107418240_107418695_107418850_107419233
ENSMUSG00000037190.13_1	chr9	-	1133	4	FSM	ENSMUSG00000037190.13	ENSMUST00000194967.2	658	4	-12	-463	-12	2	multi-exon	FALSE	canonical	3	15	junction_2	45.536310297998	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTGTCGGGAGGAGCA	NA	False	NA	-24	True	AATAAA	-15	NA	107419338	107416777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107417585_107418201_107418269_107418695_107418850_107419233
ENSMUSG00000037197.12_0	chr2	-	1533	12	FSM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	57	9	57	-5	multi-exon	FALSE	canonical	3	1239	junction_6	93.4948621914506	1136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATCTGTGTGCTCTCTG	NA	False	NA	31	True	TATAAA	-9	NA	11608016	11590256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499_11595642_11598218_11598276_11600141_11600240_11601439_11601607_11602862_11602980_11605429_11605568_11607895
ENSMUSG00000037204.8_0	chr15	+	1236	3	FSM	ENSMUSG00000037204.8	ENSMUST00000048393.8	1270	3	31	3	31	-3	multi-exon	FALSE	canonical	3	465	junction_2	16.5	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCTCTCTTGGCCTGTGT	8061	False	NA	28	True	AATAAA	-20	NA	101182183	101188823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_101182427_101184813_101185132_101188148
ENSMUSG00000037204.8_5	chr15	+	544	1	ISM	ENSMUSG00000037204.8	ENSMUST00000048393.8	1270	3	6129	1	3668	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTCTTGGCCTGTGTCC	1898	False	NA	30	True	AATAAA	-22	NA	101188281	101188825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101188300_101188800
ENSMUSG00000037210.17_1	chr5	+	5264	20	NIC	ENSMUSG00000037210.17	novel	5536	21	NA	NA	17	-12	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	21.9758114318594	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACAGCAGGAGACCCAGT	1460	False	NA	4	True	ATTAAA	-35	NA	34527293	34643788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_34527772_34567924_34568168_34577344_34577500_34578127_34578296_34583610_34583846_34588475_34588601_34593794_34593943_34596654_34596733_34597464_34597578_34600644_34600799_34600922_34601103_34602005_34602258_34615248_34615448_34616341_34616633_34618438_34618722_34619427_34619612_34621317_34621549_34622917_34623792_34633069_34633152_34642997
ENSMUSG00000037210.17_2	chr5	+	5508	21	FSM	ENSMUSG00000037210.17	ENSMUST00000180376.8	5536	21	16	12	16	-12	multi-exon	FALSE	canonical	3	34	junction_1	17.141980632354	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACAGCAGGAGACCCAGT	1459	False	NA	4	True	ATTAAA	-35	NA	34527292	34643788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34527772_34567924_34568168_34577344_34577500_34578127_34578296_34583610_34583846_34588475_34588601_34593794_34593943_34596654_34596733_34597464_34597578_34597691_34597935_34600644_34600799_34600922_34601103_34602005_34602258_34615248_34615448_34616341_34616633_34618438_34618722_34619427_34619612_34621317_34621549_34622917_34623792_34633069_34633152_34642997
ENSMUSG00000037210.17_39	chr5	+	1201	3	ISM	ENSMUSG00000037210.17	ENSMUST00000094867.8	3696	17	39790	-704	-2	-5	3prime_fragment	FALSE	canonical	3	85	junction_2	5.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGAGACCCAGTCTGGTTG	NA	False	NA	11	True	ATTAAA	-42	NA	34623470	34643795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_34623792_34633069_34633152_34642997
ENSMUSG00000037210.17_6	chr5	+	5514	21	NNC	ENSMUSG00000037210.17	novel	5536	21	NA	NA	18	-7	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_2	17.252536045463	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGGAGACCCAGTCTGGT	1461	False	NA	9	True	ATTAAA	-40	NA	34527294	34643793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_34527772_34567924_34568168_34577341_34577500_34578127_34578296_34583610_34583846_34588475_34588601_34593794_34593943_34596654_34596733_34597464_34597578_34597691_34597935_34600644_34600799_34600922_34601103_34602005_34602258_34615248_34615448_34616341_34616633_34618438_34618722_34619427_34619612_34621317_34621549_34622917_34623792_34633069_34633152_34642997
ENSMUSG00000037210.17_62	chr5	+	3295	10	ISM	ENSMUSG00000037210.17	ENSMUST00000094867.8	3696	17	17314	-697	-71	-12	3prime_fragment	FALSE	canonical	3	56	junction_6	13.200261875442	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACAGCAGGAGACCCAGT	NA	False	NA	4	True	ATTAAA	-35	NA	34600994	34643788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_34601103_34602005_34602258_34615248_34615448_34616341_34616633_34618438_34618722_34619427_34619612_34621317_34621549_34622917_34623792_34633069_34633152_34642997
ENSMUSG00000037211.13_0	chr3	+	2488	3	FSM	ENSMUSG00000037211.13	ENSMUST00000108109.8	2451	3	-45	8	-45	-8	multi-exon	FALSE	canonical	3	36	junction_1	4	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGGCTCTCGAGTGCAT	NA	False	NA	NA	False	TATAAA	-45	NA	37694050	37698739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_37694214_37694668_37694958_37696703
ENSMUSG00000037211.13_1	chr3	+	2236	2	NIC	ENSMUSG00000037211.13	novel	2481	3	NA	NA	-41	-8	combination_of_known_splicesites	FALSE	canonical	3	26	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGGCTCTCGAGTGCAT	NA	False	NA	NA	False	TATAAA	-45	NA	37694054	37698739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_37694255_37696703
ENSMUSG00000037211.13_2	chr3	+	2526	3	FSM	ENSMUSG00000037211.13	ENSMUST00000038569.8	2481	3	-53	8	-42	-8	multi-exon	FALSE	canonical	3	34	junction_1	5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGGCTCTCGAGTGCAT	NA	False	NA	NA	False	TATAAA	-45	NA	37694053	37698739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_37694255_37694668_37694958_37696703
ENSMUSG00000037211.13_3	chr3	+	4689	1	Genic_Genomic	ENSMUSG00000037211.13	novel	NA	NA	NA	NA	-45	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGGCTCTCGAGTGCAT	NA	False	NA	NA	False	TATAAA	-45	NA	37694050	37698739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_+_37694000_37698700
ENSMUSG00000037211.13_4	chr3	+	2198	2	NIC	ENSMUSG00000037211.13	novel	2451	3	NA	NA	-48	-12	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAACCGGCTCTCGAGT	NA	False	NA	NA	False	TATAAA	-41	NA	37694047	37698735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_37694214_37696703
ENSMUSG00000037211.13_5	chr3	+	2944	2	FSM	ENSMUSG00000037211.13	ENSMUST00000108107.2	2773	2	-179	8	-46	-8	multi-exon	FALSE	canonical	3	44	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGGCTCTCGAGTGCAT	NA	False	NA	NA	False	TATAAA	-45	NA	37694049	37698739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_37694958_37696703
ENSMUSG00000037214.13_0	chr8	+	2216	3	FSM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	73	6	-19	-6	multi-exon	FALSE	canonical	3	177	junction_1	13	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTATCTTGTGGCCCTGC	NA	False	NA	1	True	ATTAAA	-12	NA	26648241	26654173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26648550_26650802_26650999_26652461
ENSMUSG00000037214.13_5	chr8	+	177	1	ISM	ENSMUSG00000037214.13	ENSMUST00000127536.2	582	2	976	5	438	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAGAGAAAAATAAAAA	NA	False	NA	2	True	NA	NA	NA	26649258	26649435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_26649300_26649400
ENSMUSG00000037214.13_6	chr8	+	1516	1	ISM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	4486	9	3834	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCAGTATCTTGTGGCCC	NA	False	NA	-2	True	ATTAAA	-9	NA	26652654	26654170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_26652700_26654200
ENSMUSG00000037216.6_0	chr1	+	1478	2	FSM	ENSMUSG00000037216.6	ENSMUST00000041621.5	1485	2	-1	8	-1	-8	multi-exon	FALSE	canonical	3	65	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAAACTGTGTCCTTTT	NA	False	NA	7	True	ATTAAA	-7	NA	37911285	37915301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_37911407_37913944
ENSMUSG00000037216.6_1	chr1	+	1619	2	FSM	ENSMUSG00000037216.6	ENSMUST00000142670.2	812	2	-45	-762	-45	-6	multi-exon	TRUE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAACTGTGTCCTTTTCC	NA	False	NA	9	True	ATTAAA	-9	NA	37911409	37915303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_37911670_37913944
ENSMUSG00000037216.6_3	chr1	+	1367	1	NIC	ENSMUSG00000037216.6	novel	1485	2	NA	NA	2300	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCCTTTTCCTTAAGG	NA	False	NA	15	True	ATTAAA	-15	NA	37913942	37915309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_37913900_37915300
ENSMUSG00000037217.16_0	chrX	-	3166	13	FSM	ENSMUSG00000037217.16	ENSMUST00000115345.8	3261	13	88	7	2	-3	multi-exon	FALSE	canonical	3	14	junction_1	11.6198465279595	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAATTCTGTGCTTCTT	NA	False	NA	-5	True	AATAAA	-14	NA	20787155	20726756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_20727811_20728737_20729330_20729421_20729510_20729822_20729970_20730999_20731103_20731193_20731269_20731357_20731501_20732084_20732148_20773315_20773406_20774189_20774347_20775575_20775668_20775763_20775822_20786651
ENSMUSG00000037217.16_1	chrX	-	2385	1	NIC	ENSMUSG00000037217.16	novel	3261	13	NA	NA	58016	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAATTCTGTGCTTCTT	NA	False	NA	-5	True	AATAAA	-14	NA	20729141	20726756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_20726800_20729100
ENSMUSG00000037217.16_2	chrX	-	4095	12	NIC	ENSMUSG00000037217.16	novel	3209	13	NA	NA	0	-3	intron_retention	FALSE	canonical	3	43	junction_8	5.56405227203613	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAATTCTGTGCTTCTT	NA	False	NA	-5	True	AATAAA	-14	NA	20787157	20726756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_20729330_20729421_20729510_20729822_20729970_20730999_20731103_20731193_20731269_20731357_20731501_20732084_20732148_20773315_20773406_20774189_20774347_20775575_20775668_20775763_20775822_20786651
ENSMUSG00000037217.16_5	chrX	-	3206	13	FSM	ENSMUSG00000037217.16	ENSMUST00000081893.7	3209	13	0	3	0	-3	multi-exon	FALSE	canonical	1	4	junction_1	14.1330483461833	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAATTCTGTGCTTCTT	NA	False	NA	-5	True	AATAAA	-14	NA	20787157	20726756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_20727849_20728737_20729330_20729421_20729510_20729822_20729970_20730999_20731103_20731193_20731269_20731357_20731501_20732084_20732148_20773315_20773406_20774189_20774347_20775575_20775668_20775763_20775822_20786651
ENSMUSG00000037224.16_1	chr5	-	4088	13	FSM	ENSMUSG00000037224.16	ENSMUST00000094868.10	3983	13	-108	3	3	-3	multi-exon	FALSE	canonical	2	8	junction_2	9.95685135416256	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACACGCTCTGGCGTCTTC	NA	False	NA	-5	True	CATAAA	-15	NA	34445778	34352239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_34353445_34353920_34354025_34354825_34354931_34356122_34356240_34356936_34357089_34373904_34375210_34382295_34382398_34389497_34389588_34390648_34390739_34391628_34391832_34393346_34393485_34400516_34400658_34445442
ENSMUSG00000037224.16_14	chr5	-	1316	7	NNC	ENSMUSG00000037224.16	novel	712	4	NA	NA	-14	-1319	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	9.97914491994847	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAAATTTTTTATTAGT	NA	False	NA	NA	False	AATAAA	-16	NA	34445807	34385250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_34385540_34389497_34389588_34390648_34390739_34391628_34391832_34393346_34393485_34400516_34400658_34445442
ENSMUSG00000037224.16_18	chr5	-	3007	8	ISM	ENSMUSG00000037224.16	ENSMUST00000094868.10	3983	13	33	20925	33	1785	5prime_fragment	FALSE	canonical	2	11	junction_2	7.32343178170074	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGAGTGGTTTTATACA	NA	False	NA	NA	False	AAGAAA	-12	NA	34445637	34373161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_34375210_34382295_34382398_34389497_34389588_34390648_34390739_34391628_34391832_34393346_34393485_34400516_34400658_34445442
ENSMUSG00000037224.16_5	chr5	-	7013	9	Fusion	ENSMUSG00000037224.16_ENSMUSG00000086291.2	novel	712	4	NA	NA	1	-1	intron_retention	FALSE	canonical	2	11	junction_3	7.31009575860672	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATAGTTTTGATTATTC	NA	False	NA	NA	False	AATAAA	-16	NA	34445780	34369154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr5_-_34371410_34371553_34375210_34382295_34382398_34389497_34389588_34390648_34390739_34391628_34391832_34393346_34393485_34400516_34400658_34445442
ENSMUSG00000037234.18_0	chr8	-	3767	1	ISM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	94025	12	9950	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATCCAGTATAGAGCTC	NA	False	NA	NA	False	AATAAA	-10	NA	26515227	26511460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_26511500_26515200
ENSMUSG00000037234.18_14	chr8	-	177	1	FSM	ENSMUSG00000037234.18	ENSMUST00000211777.2	1954	1	1451	326	1451	-325	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	26528618	26528441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26528400_26528600
ENSMUSG00000037234.18_2	chr8	-	3595	22	FSM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	27	9214	27	1017	multi-exon	FALSE	canonical	3	25	junction_6	10.5632744184703	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATATGAAATTAAGTC	NA	False	NA	NA	False	NA	NA	NA	26609225	26520662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26522059_26524958_26525031_26525160_26525266_26528049_26528151_26529696_26529780_26534267_26534303_26538279_26538368_26549267_26549409_26551404_26551475_26557877_26557966_26558586_26558698_26560101_26560304_26561085_26561227_26562284_26562449_26563627_26563712_26564895_26564959_26572541_26572610_26578087_26578221_26583684_26583736_26585785_26585859_26600763_26600850_26608985
ENSMUSG00000037234.18_32	chr8	-	2263	16	ISM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	20	26378	20	-9710	5prime_fragment	FALSE	canonical	3	40	junction_13	7.13489079570715	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATGCCATCACTAGT	NA	False	NA	NA	False	TATAAA	-14	NA	26609232	26537826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_26538368_26549267_26549409_26551404_26551475_26557877_26557966_26558586_26558698_26560101_26560304_26561085_26561227_26562284_26562449_26563627_26563712_26564895_26564959_26572541_26572610_26578087_26578221_26583684_26583736_26585785_26585859_26600763_26600850_26608985
ENSMUSG00000037234.18_8	chr8	-	2703	6	ISM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	73930	9323	-724	908	3prime_fragment	FALSE	canonical	3	42	junction_5	11.1247471881387	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAATCTACCTTTGTCT	NA	False	NA	NA	False	TTTAAA	-15	NA	26535322	26520771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_26522059_26524958_26525031_26525160_26525266_26528049_26528151_26529696_26529780_26534267
ENSMUSG00000037235.14_2	chr5	-	1072	6	FSM	ENSMUSG00000037235.14	ENSMUST00000042701.13	3872	6	15	2785	15	-93	multi-exon	FALSE	canonical	1	1	junction_1	2.57681974534503	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCGGCAGGATCCGTG	NA	False	NA	NA	False	ATTAAA	-13	NA	34345039	34334015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_34334494_34334941_34335105_34336153_34336269_34341657_34341688_34344672_34344773_34344853
ENSMUSG00000037236.17_3	chr18	+	3769	15	FSM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	64	2429	3	-13	multi-exon	FALSE	canonical	3	826	junction_2	183.6430655108	1402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAAAAACTT	NA	False	NA	19	True	NA	NA	NA	35695274	35724459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000037236.17_4	chr18	+	3737	15	NIC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	2	-13	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	315.986251638406	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAAAAACTT	NA	False	NA	19	True	NA	NA	NA	35695273	35724459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_35695313_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000037236.17_6	chr18	+	2676	14	FSM	ENSMUSG00000037236.17	ENSMUST00000237061.2	1854	14	3	-825	3	-13	multi-exon	FALSE	canonical	3	171	junction_1	296.625019792437	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAAAAACTT	NA	False	NA	19	True	NA	NA	NA	35695274	35724459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35695346_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000037236.17_90	chr18	+	3464	14	ISM	ENSMUSG00000037236.17	ENSMUST00000235199.2	3107	15	9632	-668	150	-13	3prime_fragment	FALSE	canonical	3	826	junction_1	180.667762029329	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAAAAACTT	1913	False	NA	19	True	NA	NA	NA	35705129	35724459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000037242.9_0	chr4	-	4061	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	52	6	52	-6	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	3182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAAGGATTCTTTTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	135000073	134941285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
ENSMUSG00000037242.9_1	chr4	-	2407	1	ISM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	56433	6	56433	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAAGGATTCTTTTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	134943692	134941285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_134941300_134943700
ENSMUSG00000037243.18_0	chr11	+	2448	10	NIC	ENSMUSG00000037243.18	novel	1860	12	NA	NA	-7	-7	intron_retention	FALSE	canonical	3	82	junction_1	27.7666644435551	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTATGCTTTGGTGCTA	7666	False	NA	7	True	AATAAA	-14	NA	58197887	58205432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_58198083_58198337_58198831_58199620_58199885_58200217_58200267_58200353_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUSG00000037243.18_21	chr11	+	2205	11	NIC	ENSMUSG00000037243.18	novel	1860	12	NA	NA	25	-7	intron_retention	FALSE	canonical	3	82	junction_1	26.5083005867973	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTATGCTTTGGTGCTA	7698	False	NA	7	True	AATAAA	-14	NA	58197919	58205432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUSG00000037243.18_33	chr11	+	1870	12	FSM	ENSMUSG00000037243.18	ENSMUST00000153510.9	1887	12	10	7	10	-7	multi-exon	FALSE	canonical	0	0	junction_6	49.3946830209872	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTATGCTTTGGTGCTA	7683	False	NA	7	True	AATAAA	-14	NA	58197904	58205432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUSG00000037243.18_37	chr11	+	2304	10	NIC	ENSMUSG00000037243.18	novel	1860	12	NA	NA	9	-7	intron_retention	FALSE	canonical	3	82	junction_1	26.418755029031	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTATGCTTTGGTGCTA	7682	False	NA	7	True	AATAAA	-14	NA	58197903	58205432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUSG00000037243.18_41	chr11	+	2236	10	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	13	-9	intron_retention	FALSE	canonical	3	39	junction_1	36.8269225190243	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTGTATGCTTTGGTGC	7686	False	NA	5	True	AATAAA	-12	NA	58197907	58205430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUSG00000037243.18_5	chr11	+	1932	12	FSM	ENSMUSG00000037243.18	ENSMUST00000049353.9	1860	12	-93	21	10	-7	multi-exon	FALSE	canonical	0	0	junction_6	44.8549544883144	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTATGCTTTGGTGCTA	7683	False	NA	7	True	AATAAA	-14	NA	58197904	58205432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUSG00000037243.18_67	chr11	+	2114	6	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	1689	-7	intron_retention	FALSE	canonical	3	103	junction_1	25.9121593079388	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTATGCTTTGGTGCTA	40	False	NA	7	True	AATAAA	-14	NA	58199686	58205432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUSG00000037243.18_72	chr11	+	979	5	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	2907	-7	intron_retention	FALSE	canonical	3	129	junction_1	17.4266319178434	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTATGCTTTGGTGCTA	1163	False	NA	7	True	AATAAA	-14	NA	58200904	58205432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUSG00000037243.18_9	chr11	+	2152	11	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	19	-4	intron_retention	FALSE	canonical	3	39	junction_1	35.6712769606023	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTTGGTGCTACAG	7692	False	NA	10	True	AATAAA	-17	NA	58197913	58205435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUSG00000037251.6_1	chr8	-	2753	5	FSM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	19	841	19	-841	multi-exon	FALSE	canonical	3	50	junction_4	28.3681159050086	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAACAAAAAGGTC	NA	False	NA	NA	False	NA	NA	NA	26484142	26471472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26473673_26476273_26476561_26477522_26477669_26479677_26479770_26484114
ENSMUSG00000037251.6_13	chr8	-	2725	4	ISM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	4392	841	4392	-841	3prime_fragment	FALSE	canonical	3	90	junction_3	13.8884444373331	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAACAAAAAGGTC	NA	False	NA	NA	False	NA	NA	NA	26479769	26471472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_26473673_26476273_26476561_26477522_26477669_26479677
ENSMUSG00000037251.6_3	chr8	-	2754	5	NNC	ENSMUSG00000037251.6	novel	3613	5	NA	NA	17	-841	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	48.8466989672793	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAACAAAAAGGTC	NA	False	NA	NA	False	NA	NA	NA	26484144	26471472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_26473673_26476273_26476561_26477522_26477669_26479677_26479769_26484114
ENSMUSG00000037251.6_6	chr8	-	3238	5	NNC	ENSMUSG00000037251.6	novel	3613	5	NA	NA	17	-841	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	52.4404424085076	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAACAAAAAGGTC	NA	False	NA	NA	False	NA	NA	NA	26484144	26471472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_26473673_26476273_26476561_26477522_26477669_26479193_26479769_26484114
ENSMUSG00000037251.6_7	chr8	-	2934	6	NNC	ENSMUSG00000037251.6	novel	3613	5	NA	NA	15	-841	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	52.687759489278	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAACAAAAAGGTC	NA	False	NA	NA	False	NA	NA	NA	26484146	26471472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_26473673_26476273_26476561_26477522_26477669_26479193_26479372_26479677_26479769_26484114
ENSMUSG00000037251.6_9	chr8	-	1265	1	ISM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	11424	841	11424	-841	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAACAAAAAGGTC	NA	False	NA	NA	False	NA	NA	NA	26472737	26471472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_26471500_26472700
ENSMUSG00000037253.9_0	chr18	+	3972	2	FSM	ENSMUSG00000037253.9	ENSMUST00000091852.5	3738	2	-242	8	-242	-8	multi-exon	FALSE	canonical	3	119	junction_1	0	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGAATGTATTCTCCTT	NA	False	NA	28	True	AATAAA	-15	NA	73705872	73725638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_73706848_73722641
ENSMUSG00000037253.9_10	chr18	+	2330	1	ISM	ENSMUSG00000037253.9	ENSMUST00000091852.5	3738	2	17194	8	17194	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGAATGTATTCTCCTT	NA	False	NA	28	True	AATAAA	-15	NA	73723308	73725638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_73723300_73725600
ENSMUSG00000037257.9_0	chr9	+	2575	10	FSM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	20	2699	20	1561	multi-exon	FALSE	canonical	3	211	junction_6	53.7134601610168	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTCTGCTAATGTGTT	9234	False	NA	NA	False	ATTAAA	-14	NA	63509961	63549171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488
ENSMUSG00000037257.9_2	chr9	+	2562	10	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	30	1561	at_least_one_novel_splicesite	FALSE	canonical	3	162	junction_6	67.8911619914051	215	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTCTGCTAATGTGTT	9244	False	NA	NA	False	ATTAAA	-14	NA	63509971	63549171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543668_63543766_63546321_63546427_63546874_63546925_63547488
ENSMUSG00000037260.9_0	chr8	-	2465	18	FSM	ENSMUSG00000037260.9	ENSMUST00000037609.8	2694	18	37	192	37	-192	multi-exon	TRUE	canonical	3	85	junction_10	15.0390495171943	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCATGTTGTCTGAT	NA	False	NA	-28	True	TATAAA	-14	NA	26466744	26434672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26435344_26436263_26436377_26436474_26436546_26437961_26438040_26441996_26442084_26443308_26443436_26444633_26444756_26445701_26445818_26447217_26447379_26449610_26449642_26450853_26450931_26453382_26453487_26454821_26454892_26458390_26458461_26461074_26461197_26461593_26461731_26462869_26462986_26466552
ENSMUSG00000037262.8_0	chr2	+	2726	4	ISM	ENSMUSG00000037262.8	ENSMUST00000042512.8	1472	5	-13	113	-13	-113	intron_retention	FALSE	canonical	3	38	junction_2	6.23609564462324	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTCATAACTGTTATTT	4812	False	NA	NA	False	AATAAA	-16	NA	10085421	10097504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051
ENSMUSG00000037262.8_1	chr2	+	1376	5	FSM	ENSMUSG00000037262.8	ENSMUST00000042512.8	1472	5	-17	113	14	-113	multi-exon	FALSE	canonical	3	38	junction_2	5.40832691319598	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTCATAACTGTTATTT	4808	False	NA	NA	False	AATAAA	-16	NA	10085417	10097504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051_10095175_10096528
ENSMUSG00000037266.19_0	chr4	+	2372	5	NIC	ENSMUSG00000037266.19	novel	2151	6	NA	NA	1	-1	intron_retention	FALSE	canonical	3	141	junction_3	314.200075588788	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTATGGATGTTGAATG	NA	False	NA	20	True	AATAAA	-20	NA	134650937	134654682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134654130_134654241
ENSMUSG00000037266.19_1	chr4	+	1414	5	FSM	ENSMUSG00000037266.19	ENSMUST00000078084.7	1749	5	35	300	1	-1	multi-exon	FALSE	canonical	3	162	junction_3	305.166348079207	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTATGGATGTTGAATG	NA	False	NA	20	True	AATAAA	-20	NA	134650937	134654682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134651079_134651185_134651794_134652603_134652744_134654045_134654130_134654241
ENSMUSG00000037266.19_15	chr4	+	2493	3	ISM	ENSMUSG00000037266.19	ENSMUST00000148900.8	3051	4	365	300	312	-1	3prime_fragment	FALSE	canonical	3	813	junction_1	50	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTATGGATGTTGAATG	NA	False	NA	20	True	AATAAA	-20	NA	134651267	134654682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_134651794_134652603_134654130_134654241
ENSMUSG00000037266.19_2	chr4	+	2716	4	FSM	ENSMUSG00000037266.19	ENSMUST00000148900.8	3051	4	35	300	1	-1	multi-exon	FALSE	canonical	3	813	junction_2	40.8493165997507	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTATGGATGTTGAATG	NA	False	NA	20	True	AATAAA	-20	NA	134650937	134654682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134651079_134651185_134651794_134652603_134654130_134654241
ENSMUSG00000037266.19_31	chr4	+	1338	2	ISM	ENSMUSG00000037266.19	ENSMUST00000154837.8	734	5	1462	1	476	-1	3prime_fragment	FALSE	canonical	3	913	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTATGGATGTTGAATG	NA	False	NA	20	True	AATAAA	-20	NA	134653232	134654682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_134654130_134654241
ENSMUSG00000037270.19_0	chr3	+	3895	27	NIC	ENSMUSG00000037270.19	novel	3958	27	NA	NA	-7	2	combination_of_known_junctions	FALSE	canonical	3	33	junction_22	9.76286891581853	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTGCCTCTCTGTCTC	NA	False	NA	NA	False	AATAAA	-22	NA	36917262	36997547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_36917429_36918535_36918635_36924146_36924274_36928346_36928464_36929598_36929678_36931822_36931888_36939505_36939693_36941367_36941450_36941823_36942018_36943971_36944052_36944943_36945095_36949407_36949565_36949954_36950034_36960839_36960932_36962280_36962399_36971766_36971923_36972600_36972699_36974003_36974183_36974328_36974436_36975367_36975577_36982583_36982812_36985146_36985285_36991140_36991318_36992594_36992724_36994901_36995022_36996331_36996613_36997267
ENSMUSG00000037270.19_14	chr3	+	5375	29	NIC	ENSMUSG00000037270.19	novel	5610	31	NA	NA	1231	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	9.99457761151781	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCATAGTTGTTTCATAT	NA	False	NA	4	True	AATAAA	-18	NA	37062565	37107164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_37062742_37065093_37065154_37065716_37065944_37067028_37067160_37068553_37068678_37075595_37075706_37076532_37076624_37077118_37077182_37080238_37080493_37082188_37082405_37084049_37084231_37084695_37084793_37086513_37086676_37087410_37087551_37088701_37088904_37089925_37090127_37090805_37090986_37092673_37092812_37093428_37093687_37094469_37094621_37095150_37095309_37095436_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ENSMUSG00000037270.19_21	chr3	+	4169	21	ISM	ENSMUSG00000037270.19	ENSMUST00000138950.8	4998	27	14606	-1	1888	0	3prime_fragment	FALSE	canonical	3	17	junction_10	8.87637313321156	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCATAGTTGTTTCATAT	NA	False	NA	4	True	AATAAA	-18	NA	37080462	37107164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_37080493_37082188_37082405_37084049_37084231_37084695_37084793_37086513_37086676_37087410_37087551_37088701_37088904_37089925_37090127_37090805_37090986_37092673_37092812_37093428_37093687_37094469_37094621_37095150_37095309_37095436_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ENSMUSG00000037270.19_23	chr3	+	3113	14	ISM	ENSMUSG00000037270.19	ENSMUST00000138950.8	4998	27	24097	-1	-2018	0	3prime_fragment	FALSE	canonical	3	17	junction_3	9.57869924832912	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCATAGTTGTTTCATAT	NA	False	NA	4	True	AATAAA	-18	NA	37089953	37107164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_37090127_37090805_37090986_37092673_37092812_37093428_37093687_37094469_37094621_37095150_37095309_37095436_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ENSMUSG00000037270.19_25	chr3	+	2168	9	ISM	ENSMUSG00000037270.19	ENSMUST00000138950.8	4998	27	29339	-1	-1934	0	3prime_fragment	FALSE	canonical	3	30	junction_1	7.70450355311749	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCATAGTTGTTTCATAT	NA	False	NA	4	True	AATAAA	-18	NA	37095195	37107164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_37095309_37095436_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ENSMUSG00000037270.19_27	chr3	+	1129	4	ISM	ENSMUSG00000037270.19	ENSMUST00000138950.8	4998	27	36317	-1	5044	0	3prime_fragment	FALSE	canonical	3	41	junction_2	6.94422221866655	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCATAGTTGTTTCATAT	NA	False	NA	4	True	AATAAA	-18	NA	37102173	37107164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_37102310_37102662_37102798_37104911_37105078_37106472
ENSMUSG00000037270.19_3	chr3	+	3891	27	NIC	ENSMUSG00000037270.19	novel	3958	27	NA	NA	-7	-5	combination_of_known_junctions	FALSE	canonical	3	48	junction_22	8.53958759033583	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCTGACCTCTTGCCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	36917262	36997540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_36917429_36918535_36918635_36924146_36924274_36928346_36928464_36929598_36929678_36931822_36931888_36939505_36939693_36941367_36941450_36941823_36942018_36943971_36944052_36944943_36945095_36949407_36949565_36949954_36950034_36960839_36960932_36962280_36962399_36971766_36971923_36972600_36972699_36974003_36974183_36974328_36974436_36975367_36975577_36982583_36982812_36985146_36985285_36991137_36991318_36992594_36992724_36994901_36995022_36996331_36996613_36997267
ENSMUSG00000037270.19_30	chr3	+	1534	12	NIC	ENSMUSG00000037270.19	novel	3958	27	NA	NA	4	-7	combination_of_known_junctions	FALSE	canonical	3	50	junction_5	4.65859199102507	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACTTTGCAGATTTT	NA	False	NA	NA	False	ATTAAA	-7	NA	36917273	36949605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_36917429_36918535_36918635_36924146_36924274_36928346_36928464_36929598_36929678_36931822_36931888_36939505_36939693_36941367_36941450_36941823_36942018_36943971_36944052_36944943_36945095_36949407
ENSMUSG00000037270.19_38	chr3	+	6860	37	NIC	ENSMUSG00000037270.19	novel	15541	84	NA	NA	-12411	0	combination_of_known_junctions	TRUE	canonical	3	8	junction_1	11.2998893799895	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCATAGTTGTTTCATAT	4682	False	NA	4	True	AATAAA	-18	NA	37048923	37107164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_37049131_37050463_37050703_37052338_37052584_37054164_37054271_37056718_37056817_37057897_37058084_37058987_37059157_37061133_37061346_37062542_37062742_37065093_37065154_37065716_37065944_37067028_37067160_37068553_37068678_37075595_37075706_37076532_37076624_37077118_37077182_37080238_37080493_37082188_37082405_37084049_37084231_37084695_37084793_37086513_37086676_37087410_37087551_37088701_37088904_37089925_37090127_37090805_37090986_37092673_37092812_37093428_37093687_37094469_37094621_37095150_37095309_37095436_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ENSMUSG00000037270.19_52	chr3	+	3302	15	ISM	ENSMUSG00000037270.19	ENSMUST00000138950.8	4998	27	22888	-3	-3227	1	3prime_fragment	FALSE	canonical	3	17	junction_4	9.47499394216596	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATAGTTGTTTCATATCT	NA	False	NA	6	True	AATAAA	-20	NA	37088744	37107166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_37088904_37089925_37090127_37090805_37090986_37092673_37092812_37093428_37093687_37094469_37094621_37095150_37095309_37095436_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ENSMUSG00000037270.19_53	chr3	+	2838	13	ISM	ENSMUSG00000037270.19	ENSMUST00000138950.8	4998	27	25054	-4	-1061	2	3prime_fragment	FALSE	canonical	3	17	junction_2	9.95685135416256	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATAGTTGTTTCATATCTT	NA	False	NA	7	True	AATAAA	-21	NA	37090910	37107167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_37090986_37092673_37092812_37093428_37093687_37094469_37094621_37095150_37095309_37095436_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ENSMUSG00000037270.19_54	chr3	+	2006	8	ISM	ENSMUSG00000037270.19	ENSMUST00000138950.8	4998	27	29627	1	-1646	-1	3prime_fragment	FALSE	canonical	3	33	junction_1	7.20544012166771	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCCATAGTTGTTTCAT	NA	False	NA	2	True	AATAAA	-16	NA	37095483	37107162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_37095630_37095852_37096071_37098729_37098982_37100382_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ENSMUSG00000037270.19_65	chr3	+	1296	5	ISM	ENSMUSG00000037270.19	ENSMUST00000138950.8	4998	27	34617	4	3344	-4	3prime_fragment	FALSE	canonical	3	38	junction_1	7.24568837309472	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCAGTCCATAGTTGTTT	NA	False	NA	-1	True	AATAAA	-13	NA	37100473	37107159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_37100587_37102114_37102310_37102662_37102798_37104911_37105078_37106472
ENSMUSG00000037275.15_3	chr11	-	4896	28	FSM	ENSMUSG00000037275.15	ENSMUST00000172035.8	6213	28	29	1288	29	0	multi-exon	TRUE	canonical	3	150	junction_10	34.9266525198369	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTCTCGTTCTGTGG	NA	False	NA	-34	True	TATAAA	-12	NA	58059336	58012115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_58012611_58013107_58013205_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028593_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
ENSMUSG00000037275.15_5	chr11	-	4893	28	NIC	ENSMUSG00000037275.15	novel	4919	28	NA	NA	29	0	combination_of_known_junctions	FALSE	canonical	3	119	junction_10	38.087942423091	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTCTCGTTCTGTGG	NA	False	NA	-34	True	TATAAA	-12	NA	58059336	58012115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_58012611_58013107_58013205_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028590_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
ENSMUSG00000037275.15_6	chr11	-	4890	28	FSM	ENSMUSG00000037275.15	ENSMUST00000102711.9	4919	28	29	0	29	0	multi-exon	FALSE	canonical	3	91	junction_2	45.8600782424762	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTCTCGTTCTGTGG	NA	False	NA	-34	True	TATAAA	-12	NA	58059336	58012115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028590_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
ENSMUSG00000037275.15_7	chr11	-	4891	28	FSM	ENSMUSG00000037275.15	ENSMUST00000035604.13	4922	28	29	2	29	-2	multi-exon	FALSE	canonical	3	91	junction_2	43.3607067704434	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAAATGTCTCGTTCTGT	NA	False	NA	-36	True	TATAAA	-10	NA	58059336	58012117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028593_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
ENSMUSG00000037278.10_0	chr11	-	1319	3	FSM	ENSMUSG00000037278.10	ENSMUST00000103242.5	1375	3	54	2	54	-2	multi-exon	TRUE	canonical	3	1037	junction_2	9	578	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCTGGTTTGTTGTGTGG	NA	False	NA	-9	True	AATAAA	-21	NA	78441549	78432644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78433623_78434311_78434457_78441353
ENSMUSG00000037279.14_0	chr2	-	1121	3	ISM	ENSMUSG00000037279.14	ENSMUST00000103171.10	1547	4	603	3	234	-3	3prime_fragment	FALSE	canonical	3	14	junction_1	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTCTCTTTTTTAAAAT	NA	False	NA	-15	True	AATAAA	-16	NA	144173012	144147097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_144147840_144159630_144159821_144172823
ENSMUSG00000037279.14_2	chr2	-	1504	4	FSM	ENSMUSG00000037279.14	ENSMUST00000037423.4	1539	4	31	4	31	-4	multi-exon	FALSE	canonical	3	14	junction_1	4.64279609239471	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTTCTCTTTTTTAAAA	NA	False	NA	-16	True	AATAAA	-15	NA	144174035	144147098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_144147840_144159630_144159821_144172823_144173042_144173680
ENSMUSG00000037279.14_3	chr2	-	413	1	ISM	ENSMUSG00000037279.14	ENSMUST00000103171.10	1547	4	26105	3	25736	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTCTCTTTTTTAAAAT	NA	False	NA	-15	True	AATAAA	-16	NA	144147510	144147097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_144147100_144147500
ENSMUSG00000037280.13_0	chr15	-	3835	12	FSM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	-38	-1051	-38	0	multi-exon	FALSE	canonical	3	77	junction_7	8.71021059418435	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGTTGGATTTGAGTT	1636	False	NA	-7	True	AATAAA	-19	NA	100618396	100589693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100618287
ENSMUSG00000037280.13_1	chr15	-	1323	1	ISM	ENSMUSG00000037280.13	ENSMUST00000159715.8	3796	12	36241	0	27342	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGTTGGATTTGAGTT	8995	False	NA	-7	True	AATAAA	-19	NA	100591016	100589693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100589700_100591000
ENSMUSG00000037280.13_2	chr15	-	3785	12	FSM	ENSMUSG00000037280.13	ENSMUST00000052069.12	3798	12	15	-2	15	0	multi-exon	FALSE	canonical	2	3	junction_11	26.1268362081583	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGTTGGATTTGAGTT	9890	False	NA	-7	True	AATAAA	-19	NA	100627242	100589693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100627183
ENSMUSG00000037280.13_3	chr15	-	3733	11	ISM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	235	-1051	235	0	3prime_fragment	FALSE	canonical	3	77	junction_7	8.59127464349732	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGTTGGATTTGAGTT	1909	False	NA	-7	True	AATAAA	-19	NA	100618123	100589693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895
ENSMUSG00000037280.13_5	chr15	-	3779	12	NNC	ENSMUSG00000037280.13	novel	3798	12	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	26.9471475360673	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGATGTTGGATTTGAG	1628	False	NA	-9	True	AATAAA	-17	NA	100618404	100589695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100618349
ENSMUSG00000037280.13_7	chr15	-	3065	10	ISM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	4402	-1050	4402	-1	3prime_fragment	FALSE	canonical	3	77	junction_7	7.67069137515254	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGATGTTGGATTTGAGT	6076	False	NA	-8	True	AATAAA	-18	NA	100613956	100589694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808
ENSMUSG00000037286.16_0	chr9	+	5974	34	NIC	ENSMUSG00000037286.16	novel	3857	26	NA	NA	161	-13	combination_of_known_junctions	FALSE	canonical	3	68	junction_1	68.4680054375402	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTCAAAATCAGCCTTGT	NA	False	NA	1	True	AATAAA	-1	NA	100480011	100840584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_100480163_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
ENSMUSG00000037286.16_15	chr9	+	6006	34	FSM	ENSMUSG00000037286.16	ENSMUST00000129269.8	6186	34	168	12	0	-11	multi-exon	FALSE	canonical	3	316	junction_9	35.0771941586826	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAAAATCAGCCTTGTGG	NA	False	NA	3	True	AATAAA	-3	NA	100525668	100840586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
ENSMUSG00000037286.16_16	chr9	+	4772	33	NIC	ENSMUSG00000037286.16	novel	6186	34	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	3	23	junction_4	76.1785461822257	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAAATGGTTCTCAA	NA	False	NA	-3	True	AATAAA	-12	NA	100525668	100839449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
ENSMUSG00000037286.16_35	chr9	+	4761	33	FSM	ENSMUSG00000037286.16	ENSMUST00000041418.13	5909	33	0	1148	0	-3	multi-exon	FALSE	canonical	3	20	junction_30	76.7811355310502	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAAATGGTTCTCAA	NA	False	NA	-3	True	AATAAA	-12	NA	100525665	100839449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100836273_100836389_100838421_100838503_100838587
ENSMUSG00000037287.16_0	chr9	-	4970	8	FSM	ENSMUSG00000037287.16	ENSMUST00000066148.12	5000	8	27	3	8	-3	multi-exon	FALSE	canonical	3	34	junction_7	5.55124549363584	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTCCTTGTGTTCTGAGT	NA	False	NA	-4	True	ATTAAA	-14	NA	42383527	42323614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_42327446_42348410_42348528_42350392_42350520_42354114_42354372_42355702_42355885_42361219_42361360_42362908_42363059_42383361
ENSMUSG00000037287.16_1	chr9	-	2881	1	ISM	ENSMUSG00000037287.16	ENSMUST00000125995.8	4849	8	42402	1	13041	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCTTGTGTTCTGAGTGT	4494	False	NA	-2	True	ATTAAA	-16	NA	42326493	42323612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_42323600_42326500
ENSMUSG00000037287.16_10	chr9	-	4947	8	FSM	ENSMUSG00000037287.16	ENSMUST00000066179.14	3893	8	43	-1097	43	-5	multi-exon	FALSE	canonical	0	0	junction_7	17.1607049947946	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACTCCTTGTGTTCTGA	NA	False	NA	-6	True	ATTAAA	-12	NA	42372714	42323616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_42327446_42348410_42348528_42350392_42350520_42354114_42354372_42355702_42355885_42361219_42361360_42362908_42363059_42372569
ENSMUSG00000037287.16_19	chr9	-	4787	7	NIC	ENSMUSG00000037287.16	novel	5000	8	NA	NA	7	-5	combination_of_known_splicesites	FALSE	canonical	3	6	junction_4	15.8788818526019	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACTCCTTGTGTTCTGA	NA	False	NA	-6	True	ATTAAA	-12	NA	42383528	42323616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_42327446_42348410_42348528_42350392_42350520_42354114_42354372_42361219_42361360_42362908_42363059_42383361
ENSMUSG00000037287.16_3	chr9	-	3954	2	FSM	ENSMUSG00000037287.16	ENSMUST00000142775.2	2327	2	46	-1673	46	-1	multi-exon	FALSE	canonical	2	11	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCTTGTGTTCTGAGTGT	4400	False	NA	-2	True	ATTAAA	-16	NA	42339488	42323612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_42327446_42339367
ENSMUSG00000037287.16_9	chr9	-	4676	6	NIC	ENSMUSG00000037287.16	novel	5000	8	NA	NA	-7	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	19.90577805563	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCTTGTGTTCTGAGTGT	NA	False	NA	-2	True	ATTAAA	-16	NA	42383521	42323612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_42327446_42348410_42348528_42350392_42350520_42354114_42354372_42355702_42355885_42383361
ENSMUSG00000037295.8_0	chr4	-	2654	9	FSM	ENSMUSG00000037295.8	ENSMUST00000037828.8	6549	9	30	3865	30	1157	multi-exon	TRUE	canonical	3	50	junction_1	8.8175960442742	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCATCACTTGGAGTATTG	NA	False	NA	-8	True	AATAAA	-19	NA	134495305	134472729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134474511_134475592_134475628_134476647_134476779_134477269_134477354_134477692_134477766_134482503_134482619_134484651_134484765_134486229_134486373_134495126
ENSMUSG00000037295.8_2	chr4	-	4101	1	ISM	ENSMUSG00000037295.8	ENSMUST00000037828.8	6549	9	22370	0	4453	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	134472965	134468864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_134468900_134473000
ENSMUSG00000037296.8_0	chr8	+	1191	4	FSM	ENSMUSG00000037296.8	ENSMUST00000038421.8	2663	4	27	1445	27	406	multi-exon	FALSE	canonical	3	365	junction_2	35.9660333586504	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAAATGGAGTTTCTGGT	8467	False	NA	17	True	AATAAA	-20	NA	26275342	26292558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26275746_26282184_26282254_26283704_26283821_26291955
ENSMUSG00000037300.20_0	chr8	-	2917	19	NIC	ENSMUSG00000037300.20	novel	3148	21	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	125	junction_15	88.9418592170619	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCGTGGTCAGTTTGGTC	NA	False	NA	-11	True	ATTAAA	-13	NA	125448719	125398073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ENSMUSG00000037300.20_1	chr8	-	3145	21	FSM	ENSMUSG00000037300.20	ENSMUST00000118134.3	3148	21	3	0	1	0	multi-exon	FALSE	canonical	3	213	junction_17	74.4114238541368	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCGTGGTCAGTTTGGTC	NA	False	NA	-11	True	ATTAAA	-13	NA	125448719	125398073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ENSMUSG00000037300.20_13	chr8	-	3297	23	FSM	ENSMUSG00000037300.20	ENSMUST00000214828.2	3301	23	2	2	2	0	multi-exon	FALSE	canonical	3	107	junction_6	114.790718661872	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCGTGGTCAGTTTGGTC	NA	False	NA	-11	True	ATTAAA	-13	NA	125448715	125398073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ENSMUSG00000037300.20_3	chr8	-	3142	21	NIC	ENSMUSG00000037300.20	novel	3148	21	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	107	junction_6	93.2745410066434	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCGTGGTCAGTTTGGTC	NA	False	NA	-11	True	ATTAAA	-13	NA	125448719	125398073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ENSMUSG00000037300.20_4	chr8	-	3304	23	NIC	ENSMUSG00000037300.20	novel	3301	23	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	143	junction_17	103.32721034023	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCGTGGTCAGTTTGGTC	NA	False	NA	-11	True	ATTAAA	-13	NA	125448719	125398073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ENSMUSG00000037300.20_5	chr8	-	2914	19	FSM	ENSMUSG00000037300.20	ENSMUST00000231984.2	2905	19	-12	3	1	0	multi-exon	FALSE	canonical	3	107	junction_6	106.569342173807	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCGTGGTCAGTTTGGTC	NA	False	NA	-11	True	ATTAAA	-13	NA	125448719	125398073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ENSMUSG00000037300.20_57	chr8	-	1864	16	ISM	ENSMUSG00000037300.20	ENSMUST00000214828.2	3301	23	-2	8662	1	-454	5prime_fragment	FALSE	canonical	3	143	junction_10	122.703146749471	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACGGGTAAGCCTCCAGT	NA	False	NA	-9	True	ATTAAA	-17	NA	125448719	125406733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ENSMUSG00000037300.20_58	chr8	-	1478	12	ISM	ENSMUSG00000037300.20	ENSMUST00000041614.15	3038	18	-9	8660	0	-454	5prime_fragment	FALSE	canonical	3	125	junction_8	104.246529165125	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACGGGTAAGCCTCCAGT	NA	False	NA	-9	True	ATTAAA	-17	NA	125448720	125406733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ENSMUSG00000037300.20_59	chr8	-	1705	14	ISM	ENSMUSG00000037300.20	ENSMUST00000118134.3	3148	21	3	8660	1	-454	5prime_fragment	FALSE	canonical	3	213	junction_10	81.4508963775725	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACGGGTAAGCCTCCAGT	NA	False	NA	-9	True	ATTAAA	-17	NA	125448719	125406733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ENSMUSG00000037306.14_1	chr4	-	3380	12	FSM	ENSMUSG00000037306.14	ENSMUST00000054096.13	4715	12	12	1323	12	-1323	multi-exon	FALSE	canonical	3	25	junction_8	6.8947219003122	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAGAAATCAGATTGGAC	NA	False	NA	NA	False	AATAAA	-12	NA	134431589	134290323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134291144_134291815_134291932_134293138_134293312_134296206_134296427_134303250_134303367_134305596_134305691_134308081_134308200_134311610_134311706_134318666_134318748_134320560_134320677_134367597_134367695_134430255
ENSMUSG00000037306.14_4	chr4	-	1954	10	ISM	ENSMUSG00000037306.14	ENSMUST00000054096.13	4715	12	110926	1317	110403	-1317	3prime_fragment	FALSE	canonical	3	25	junction_8	7.48496435248857	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAGATTGGACTCATTG	NA	False	NA	NA	False	AATAAA	-18	NA	134320675	134290317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_134291144_134291815_134291932_134293138_134293312_134296206_134296427_134303250_134303367_134305596_134305691_134308081_134308200_134311610_134311706_134318666_134318748_134320560
ENSMUSG00000037313.17_1	chr5	+	2182	15	FSM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	0	5	0	-5	multi-exon	FALSE	canonical	3	792	junction_7	83.9525193797308	942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGTCAACCCAGGTCCT	NA	False	NA	27	True	ACTAAA	-15	NA	33815929	33829537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
ENSMUSG00000037313.17_19	chr5	+	2057	15	NIC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	239.805927059907	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAAAGTCAACCCAGG	NA	False	NA	23	True	ACTAAA	-11	NA	33815929	33829533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_33816072_33818686_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
ENSMUSG00000037313.17_2	chr5	+	2380	14	ISM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	0	3	0	-3	intron_retention	FALSE	canonical	3	792	junction_7	85.2006333837612	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCAACCCAGGTCCTGT	NA	False	NA	29	True	ACTAAA	-17	NA	33815929	33829539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008
ENSMUSG00000037313.17_5	chr5	+	2206	15	FSM	ENSMUSG00000037313.17	ENSMUST00000074849.13	2669	15	457	6	-1	-3	multi-exon	FALSE	canonical	3	29	junction_6	250.331341649912	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCAACCCAGGTCCTGT	NA	False	NA	29	True	ACTAAA	-17	NA	33815928	33829539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824386_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
ENSMUSG00000037315.16_2	chrX	+	4783	13	NNC	ENSMUSG00000037315.16	novel	2472	10	NA	NA	-339	-3	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	41.5759011394288	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTCTGTCAGTGTGATG	NA	False	NA	6	True	ATTAAA	-14	NA	20291587	20386175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_20291651_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
ENSMUSG00000037315.16_29	chrX	+	2187	1	ISM	ENSMUSG00000037315.16	ENSMUST00000115384.9	4866	13	92063	2	57224	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTCTGTCAGTGTGATGA	NA	False	NA	7	True	ATTAAA	-15	NA	20383989	20386176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_20384000_20386200
ENSMUSG00000037315.16_6	chrX	+	4763	13	FSM	ENSMUSG00000037315.16	ENSMUST00000115384.9	4866	13	101	2	1	-2	multi-exon	FALSE	canonical	3	119	junction_1	19.6800801714717	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTCTGTCAGTGTGATGA	NA	False	NA	7	True	ATTAAA	-15	NA	20292027	20386176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20292070_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
ENSMUSG00000037316.10_1	chr8	-	4784	5	FSM	ENSMUSG00000037316.10	ENSMUST00000038498.10	4876	5	84	8	-5	-8	multi-exon	FALSE	canonical	3	378	junction_2	10.356157588604	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATAAACAGCTGTTTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	26275231	26254573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26258438_26259309_26259565_26261106_26261362_26267450_26267556_26274926
ENSMUSG00000037316.10_18	chr8	-	2560	1	ISM	ENSMUSG00000037316.10	ENSMUST00000038498.10	4876	5	18182	8	10477	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATAAACAGCTGTTTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	26257133	26254573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_26254600_26257100
ENSMUSG00000037321.18_0	chr17	+	2953	11	FSM	ENSMUSG00000037321.18	ENSMUST00000170086.8	2953	11	-6	6	-6	0	multi-exon	FALSE	canonical	0	0	junction_8	3.91024295920343	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGGCTTCTCCCGTTTC	6985	False	NA	NA	False	AATAAA	-14	NA	34406520	34416193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34407380_34408151_34408267_34408403_34408535_34409536_34409743_34410302_34410501_34411810_34411940_34412101_34412291_34412458_34412633_34412854_34413018_34413817_34413955_34415541
ENSMUSG00000037325.11_0	chr3	-	2583	19	FSM	ENSMUSG00000037325.11	ENSMUST00000108156.9	2687	19	95	9	7	-9	multi-exon	FALSE	canonical	3	20	junction_12	6.84754619472471	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTAATATACTTGTGTCT	NA	False	NA	NA	False	ATTAAA	-12	NA	36667531	36627299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_36627772_36629442_36629567_36629693_36629798_36629891_36630002_36632544_36632710_36636774_36636915_36644800_36644867_36646513_36646589_36648516_36648710_36652414_36652518_36653487_36653573_36656977_36657109_36658554_36658672_36659832_36659906_36661669_36661857_36664328_36664505_36664714_36664778_36666160_36666227_36667398
ENSMUSG00000037325.11_3	chr3	-	2424	18	NIC	ENSMUSG00000037325.11	novel	2687	19	NA	NA	6	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	9.90403783302163	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACTTGTGTCTTTATA	NA	False	NA	NA	False	ATTAAA	-17	NA	36667532	36627294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_36627772_36629442_36629567_36629693_36629798_36629891_36630002_36636774_36636915_36644800_36644867_36646513_36646589_36648516_36648710_36652414_36652518_36653487_36653573_36656977_36657109_36658554_36658672_36659832_36659906_36661669_36661857_36664328_36664505_36664714_36664778_36666160_36666227_36667398
ENSMUSG00000037326.11_1	chr17	-	4860	11	NIC	ENSMUSG00000037326.11	novel	5216	12	NA	NA	-22	0	intron_retention	FALSE	canonical	0	0	junction_4	23.9282260103001	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGCTTGCATTCTGTTG	1790	False	NA	-11	True	AATAAA	-16	NA	26204702	26177342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26178708_26178780_26178960_26179038_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26204444
ENSMUSG00000037326.11_11	chr17	-	705	1	ISM	ENSMUSG00000037326.11	ENSMUST00000212735.2	4922	10	26633	5	4687	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGCTTGCATTCTGTTG	NA	False	NA	-11	True	AATAAA	-16	NA	26178047	26177342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26177300_26178000
ENSMUSG00000037326.11_12	chr17	-	4826	11	NIC	ENSMUSG00000037326.11	novel	5216	12	NA	NA	7	0	intron_retention	FALSE	canonical	0	0	junction_4	28.3734030387615	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAGCTTGCATTCTGTT	1819	False	NA	-12	True	AATAAA	-15	NA	26204673	26177343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26178704_26178780_26178960_26179038_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26204444
ENSMUSG00000037326.11_18	chr17	-	3946	10	ISM	ENSMUSG00000037326.11	ENSMUST00000212520.2	5216	12	20925	-1	-1111	0	3prime_fragment	TRUE	canonical	0	0	junction_4	24.6806767020099	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGCTTGCATTCTGTTG	NA	False	NA	-11	True	AATAAA	-16	NA	26183845	26177342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26178708_26178780_26178960_26179038_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000
ENSMUSG00000037326.11_58	chr17	-	1605	2	ISM	ENSMUSG00000037326.11	ENSMUST00000212149.2	4555	12	19847	2	3714	0	3prime_fragment	TRUE	canonical	3	78	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGCTTGCATTCTGTTG	NA	False	NA	-11	True	AATAAA	-16	NA	26179020	26177342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26178708_26178780
ENSMUSG00000037331.16_1	chr11	+	3507	18	ISM	ENSMUSG00000037331.16	ENSMUST00000178636.2	6617	19	-145	4425	-145	-4422	5prime_fragment	FALSE	canonical	3	629	junction_13	50.0992786002251	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAATTTGTAAATTAA	NA	False	NA	NA	False	GATAAA	-20	NA	57899744	57948435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_57900374_57931216_57931279_57931515_57931582_57932303_57932479_57933055_57933185_57933261_57933469_57933569_57933733_57934731_57934877_57938520_57938696_57938802_57938973_57940522_57940916_57941608_57941733_57941827_57942034_57942450_57942558_57943405_57943558_57946292_57946438_57947879_57947990_57948086
ENSMUSG00000037331.16_114	chr11	+	2517	1	ISM	ENSMUSG00000037331.16	ENSMUST00000071487.13	6614	19	50443	8	17894	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	309	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGCAAAACACTGGCTG	NA	False	NA	6	True	AATAAA	-7	NA	57950332	57952849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_57950300_57952800
ENSMUSG00000037331.16_2	chr11	+	6727	19	FSM	ENSMUSG00000037331.16	ENSMUST00000178636.2	6617	19	-149	39	-149	-36	multi-exon	FALSE	canonical	3	480	junction_18	70.0811038091661	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATGTATAAAAATA	NA	False	NA	-22	True	NA	NA	NA	57899740	57952821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_57900374_57931216_57931279_57931515_57931582_57932303_57932479_57933055_57933185_57933261_57933469_57933569_57933733_57934731_57934877_57938520_57938696_57938802_57938973_57940522_57940916_57941608_57941733_57941827_57942034_57942450_57942558_57943405_57943558_57946292_57946438_57947879_57947990_57948086_57948215_57949384
ENSMUSG00000037331.16_9	chr11	+	2612	11	ISM	ENSMUSG00000037331.16	ENSMUST00000178636.2	6617	19	-146	11648	-146	7373	5prime_fragment	FALSE	canonical	3	653	junction_6	41.6984412178681	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGGTCTTAAGAACCCT	NA	False	NA	7	True	AATAAA	-19	NA	57899743	57941212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_57900374_57931216_57931279_57931515_57931582_57932303_57932479_57933055_57933185_57933261_57933469_57933569_57933733_57934731_57934877_57938520_57938696_57938802_57938973_57940522
ENSMUSG00000037331.16_99	chr11	+	4630	9	ISM	ENSMUSG00000037331.16	ENSMUST00000071487.13	6614	19	40805	36	8256	-36	3prime_fragment	FALSE	canonical	3	480	junction_8	91.9074772529417	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATGTATAAAAATA	NA	False	NA	-22	True	NA	NA	NA	57940694	57952821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_57940916_57941608_57941733_57941827_57942034_57942450_57942558_57943405_57943558_57946292_57946438_57947879_57947990_57948086_57948215_57949384
ENSMUSG00000037336.15_1	chr12	-	123	1	ISM	ENSMUSG00000037336.15	ENSMUST00000150764.8	3486	9	11791	2	6697	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAAAAAAAAAAAGAGGT	5714	False	NA	NA	False	NA	NA	NA	4912564	4912441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_4912400_4912600
ENSMUSG00000037336.15_2	chr12	-	3117	14	FSM	ENSMUSG00000037336.15	ENSMUST00000045921.14	2490	14	7	-634	4	2	multi-exon	FALSE	canonical	1	1	junction_1	2.01473859287828	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGAGGTATGT	NA	False	NA	NA	False	NA	NA	NA	4924351	4912437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_4914080_4915136_4915314_4915727_4915872_4916158_4916269_4916448_4916530_4916789_4916874_4917337_4917460_4917611_4917703_4918912_4919044_4919131_4919211_4919534_4919659_4920498_4920624_4921375_4921502_4924270
ENSMUSG00000037336.15_5	chr12	-	3904	13	ISM	ENSMUSG00000037336.15	ENSMUST00000137337.8	2641	15	2000	-645	1987	13	3prime_fragment	FALSE	canonical	1	1	junction_1	2.05986784905138	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTATGTTGCTTAAGCTG	NA	False	NA	NA	False	NA	NA	NA	4922358	4912426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_4914080_4915136_4915314_4915727_4915872_4916158_4916269_4916448_4916530_4916789_4916874_4917337_4917460_4917611_4917703_4918912_4919044_4919131_4919211_4919534_4919659_4920498_4920624_4921375
ENSMUSG00000037337.12_0	chr7	+	2700	32	FSM	ENSMUSG00000037337.12	ENSMUST00000085835.8	2724	32	20	4	-13	0	multi-exon	FALSE	canonical	3	103	junction_17	22.4346431975332	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCTCGGAGGAGAGA	NA	False	NA	18	True	AATAAA	-23	NA	28682272	28702699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
ENSMUSG00000037337.12_11	chr7	+	2654	31	ISM	ENSMUSG00000037337.12	ENSMUST00000208227.2	2720	32	788	2	10	0	3prime_fragment	FALSE	canonical	2	9	junction_30	30.0925239885258	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCTCGGAGGAGAGA	NA	False	NA	18	True	AATAAA	-23	NA	28682262	28702699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28702521
ENSMUSG00000037337.12_26	chr7	+	1587	19	ISM	ENSMUSG00000037337.12	ENSMUST00000085835.8	2724	32	8162	4	8129	0	3prime_fragment	FALSE	canonical	3	103	junction_4	25.3179778023443	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCTCGGAGGAGAGA	NA	False	NA	18	True	AATAAA	-23	NA	28690414	28702699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
ENSMUSG00000037339.18_0	chr5	-	2128	7	FSM	ENSMUSG00000037339.18	ENSMUST00000150033.8	2112	7	-16	0	1	0	multi-exon	FALSE	canonical	3	30	junction_2	74.8793473974411	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTCTGCCTAGATTCT	NA	False	NA	-12	True	ATTAAA	-14	NA	33786948	33757699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_33758225_33764807_33765572_33765674_33765834_33767775_33767831_33771946_33772179_33786196_33786322_33786680
ENSMUSG00000037339.18_1	chr5	-	1969	6	FSM	ENSMUSG00000037339.18	ENSMUST00000065119.15	2009	6	31	9	1	0	multi-exon	FALSE	canonical	3	127	junction_2	26.6187903556867	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTCTGCCTAGATTCT	NA	False	NA	-12	True	ATTAAA	-14	NA	33786948	33757699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196_33786322_33786680
ENSMUSG00000037339.18_16	chr5	-	1743	1	NIC	ENSMUSG00000037339.18	novel	2009	6	NA	NA	26816	2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCTGCCTAGATTCTTT	NA	False	NA	-10	True	ATTAAA	-16	NA	33759440	33757697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_33757700_33759400
ENSMUSG00000037339.18_2	chr5	-	1206	5	NIC	ENSMUSG00000037339.18	novel	2009	6	NA	NA	2	2	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	76.423164027669	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCTGCCTAGATTCTTT	NA	False	NA	-10	True	ATTAAA	-16	NA	33786947	33757697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_33758225_33767775_33767831_33771946_33772179_33786196_33786322_33786680
ENSMUSG00000037339.18_3	chr5	-	1971	6	NIC	ENSMUSG00000037339.18	novel	2112	7	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	70.7937850379537	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTCTGCCTAGATTCT	NA	False	NA	-12	True	ATTAAA	-14	NA	33786946	33757699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786192_33786322_33786680
ENSMUSG00000037339.18_9	chr5	-	2342	5	FSM	ENSMUSG00000037339.18	ENSMUST00000045329.10	2346	5	4	0	4	0	multi-exon	FALSE	canonical	3	127	junction_2	24.5089269450949	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTCTGCCTAGATTCT	NA	False	NA	-12	True	ATTAAA	-14	NA	33786962	33757699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196
ENSMUSG00000037341.15_2	chrX	-	5402	17	FSM	ENSMUSG00000037341.15	ENSMUST00000072451.11	2512	17	21	-2911	0	2910	multi-exon	TRUE	canonical	0	0	junction_11	2.05775970414429	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATAAGCTTGCTTGAGAC	NA	False	NA	NA	False	GATAAA	-15	NA	20158025	19969082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_19972454_19974913_19975020_19986758_19986842_19998009_19998074_20005151_20005212_20025053_20025208_20025870_20025983_20028166_20028281_20028382_20028472_20028672_20028779_20031168_20031311_20032246_20032353_20052298_20052412_20055082_20055160_20068948_20069027_20071604_20071805_20157598
ENSMUSG00000037341.15_3	chrX	-	5357	16	NIC	ENSMUSG00000037341.15	novel	2512	17	NA	NA	2	2906	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	2.24697327284703	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGACAATAAGCTTGCTTG	NA	False	NA	NA	False	GATAAA	-11	NA	20158044	19969086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_19972454_19974913_19975020_19986758_19986842_19998009_19998074_20025053_20025208_20025870_20025983_20028166_20028281_20028382_20028472_20028672_20028779_20031168_20031311_20032246_20032353_20052298_20052412_20055082_20055160_20068948_20069027_20071604_20071805_20157598
ENSMUSG00000037343.9_0	chr15	-	5029	26	NNC	ENSMUSG00000037343.9	novel	5031	26	NA	NA	2	-2	intron_retention	FALSE	non_canonical	0	0	junction_25	41.14333967971	237	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGTCTGCCTTTGTTTTT	NA	False	NA	-8	True	AATAAA	-16	NA	54935546	54878528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927983_54928103_54929255_54929417_54934788_54934842_54935238
ENSMUSG00000037343.9_4	chr15	-	4810	27	NNC	ENSMUSG00000037343.9	novel	5031	26	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	46.5584985473356	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGTCTGCCTTTGTTTTT	NA	False	NA	-8	True	AATAAA	-16	NA	54935546	54878528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_54879550_54879768_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927983_54928103_54929255_54929417_54934788_54934842_54935238
ENSMUSG00000037343.9_5	chr15	-	5041	26	NNC	ENSMUSG00000037343.9	novel	5031	26	NA	NA	2	-2	intron_retention	FALSE	non_canonical	0	0	junction_22	54.5922485340181	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGTCTGCCTTTGTTTTT	NA	False	NA	-8	True	AATAAA	-16	NA	54935546	54878528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927971_54928103_54929255_54929417_54934788_54934842_54935238
ENSMUSG00000037344.15_0	chr5	-	5608	21	Fusion	ENSMUSG00000037344.15_ENSMUSG00000023348.12	novel	3330	14	NA	NA	43	-251	intron_retention	FALSE	canonical	3	21	junction_10	44.8540968028563	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCACTTCCAAGTCTGT	6544	False	NA	-8	True	NA	NA	NA	137331816	137308166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr5_-_137308437_137308546_137308668_137308914_137309094_137310135_137310306_137310401_137310496_137310967_137311352_137311612_137311739_137311842_137314100_137319655_137319803_137320657_137320833_137320977_137321171_137321308_137321434_137323584_137323668_137323778_137323937_137325632_137325745_137325858_137325967_137326698_137327008_137329204_137329337_137330387_137330523_137330717_137330941_137331709
ENSMUSG00000037344.15_1	chr5	-	2534	10	ISM	ENSMUSG00000037344.15	ENSMUST00000039991.14	3330	14	5008	0	4421	0	3prime_fragment	FALSE	canonical	3	21	junction_3	4.61880215351701	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTGGTGGAGCACTGCT	6717	False	NA	0	True	AATAAA	-15	NA	137326851	137312819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137314100_137319655_137319803_137320657_137320833_137320977_137321171_137321308_137321434_137323584_137323668_137323778_137323937_137325632_137325745_137325858_137325967_137326698
ENSMUSG00000037344.15_16	chr5	-	2986	13	NIC	ENSMUSG00000037344.15	novel	3330	14	NA	NA	31	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_9	9.09517576642817	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGGGCTGGTGGAGCAC	6532	False	NA	-4	True	AATAAA	-11	NA	137331828	137312823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_137314100_137319655_137319803_137320657_137320833_137320977_137321171_137321308_137321434_137323584_137323668_137323778_137323937_137325632_137325745_137325858_137325967_137329204_137329337_137330387_137330523_137330717_137330941_137331709
ENSMUSG00000037344.15_3	chr5	-	3290	14	FSM	ENSMUSG00000037344.15	ENSMUST00000039991.14	3330	14	32	8	32	-8	multi-exon	FALSE	canonical	3	21	junction_3	4.75307437100782	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTATGGGCTGGTGGA	6533	False	NA	-8	True	AATAAA	-7	NA	137331827	137312827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137314100_137319655_137319803_137320657_137320833_137320977_137321171_137321308_137321434_137323584_137323668_137323778_137323937_137325632_137325745_137325858_137325967_137326698_137327008_137329204_137329337_137330387_137330523_137330717_137330941_137331709
ENSMUSG00000037344.15_4	chr5	-	2790	11	ISM	ENSMUSG00000037344.15	ENSMUST00000039991.14	3330	14	2554	1	1967	-1	3prime_fragment	FALSE	canonical	3	21	junction_3	4.41021541423999	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGCTGGTGGAGCACTGC	9055	False	NA	-1	True	AATAAA	-14	NA	137329305	137312820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137314100_137319655_137319803_137320657_137320833_137320977_137321171_137321308_137321434_137323584_137323668_137323778_137323937_137325632_137325745_137325858_137325967_137326698_137327008_137329204
ENSMUSG00000037344.15_6	chr5	-	2187	8	ISM	ENSMUSG00000037344.15	ENSMUST00000039991.14	3330	14	6200	1	-4885	-1	3prime_fragment	FALSE	canonical	3	21	junction_3	4.65109159888563	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGCTGGTGGAGCACTGC	7909	False	NA	-1	True	AATAAA	-14	NA	137325659	137312820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137314100_137319655_137319803_137320657_137320833_137320977_137321171_137321308_137321434_137323584_137323668_137323778_137323937_137325632
ENSMUSG00000037344.15_7	chr5	-	927	1	ISM	ENSMUSG00000037344.15	ENSMUST00000039991.14	3330	14	18105	8	7020	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTATGGGCTGGTGGA	439	False	NA	-8	True	AATAAA	-7	NA	137313754	137312827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137312800_137313800
ENSMUSG00000037347.8_0	chrX	+	2253	2	FSM	ENSMUSG00000037347.8	ENSMUST00000044138.8	2206	2	-50	3	-50	-3	multi-exon	FALSE	canonical	3	12	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTCTATCTAGTGGT	NA	False	NA	NA	False	AATAAA	-17	NA	19925748	19963757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_19927448_19963203
ENSMUSG00000037348.16_0	chr4	+	2039	2	FSM	ENSMUSG00000037348.16	ENSMUST00000081525.4	2351	2	310	2	3	-2	multi-exon	FALSE	canonical	1	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTTGTTTTGACTCCT	NA	False	NA	17	True	AATAAA	-18	NA	134224317	134236122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134224348_134234113
ENSMUSG00000037348.16_1	chr4	+	2155	3	FSM	ENSMUSG00000037348.16	ENSMUST00000136171.8	890	3	-2	-1263	-2	-4	multi-exon	FALSE	canonical	0	0	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTTTGTTTTGACTC	NA	False	NA	15	True	AATAAA	-16	NA	134224283	134236120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134224348_134227910_134227995_134234113
ENSMUSG00000037348.16_5	chr4	+	1572	1	ISM	ENSMUSG00000037348.16	ENSMUST00000081525.4	2351	2	10535	10	10191	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTGCTTCCTCTTTGTTT	NA	False	NA	9	True	AATAAA	-10	NA	134234542	134236114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_134234500_134236100
ENSMUSG00000037349.10_0	chr19	-	1022	6	FSM	ENSMUSG00000037349.10	ENSMUST00000041686.10	1000	6	-23	1	-23	0	multi-exon	FALSE	canonical	3	112	junction_2	17.04582060213	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCGTTAGCTTCTGCTGC	7022	False	NA	-4	True	AATAAA	-16	NA	6973428	6970386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973375
ENSMUSG00000037349.10_1	chr19	-	1463	5	NIC	ENSMUSG00000037349.10	novel	1000	6	NA	NA	8	0	intron_retention	FALSE	canonical	3	112	junction_2	18.8679622641132	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCGTTAGCTTCTGCTGC	7053	False	NA	-4	True	AATAAA	-16	NA	6973397	6970386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6973104_6973375
ENSMUSG00000037351.10_0	chr1	-	2110	11	FSM	ENSMUSG00000037351.10	ENSMUST00000043951.10	3248	11	46	1092	-15	-1092	multi-exon	FALSE	canonical	3	484	junction_1	31.3043128019128	794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCCCGGTGTGTGGCT	NA	False	NA	-23	True	TATAAA	-22	NA	36749043	36738286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
ENSMUSG00000037351.10_10	chr1	-	2268	10	NIC	ENSMUSG00000037351.10	novel	3248	11	NA	NA	-14	-1090	intron_retention	FALSE	canonical	3	484	junction_1	32.9256551253289	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGCCCGGTGTGTGGCTCT	NA	False	NA	-21	True	TATAAA	-24	NA	36749042	36738284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
ENSMUSG00000037353.10_19	chr15	+	2207	7	ISM	ENSMUSG00000037353.10	ENSMUST00000037001.10	2502	9	2556	1	-828	0	3prime_fragment	FALSE	canonical	3	98	junction_1	7.80313327381308	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCTGGGAATTACTTAT	4891	False	NA	26	True	AGTAAA	-15	NA	100369459	100377044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ENSMUSG00000037353.10_2	chr15	+	2855	8	NIC	ENSMUSG00000037353.10	novel	2502	9	NA	NA	-4	-5	intron_retention	FALSE	canonical	3	81	junction_1	12.9362644830535	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTCTGGGAATTA	2415	False	NA	21	True	AGTAAA	-10	NA	100366983	100377039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ENSMUSG00000037353.10_23	chr15	+	1882	5	ISM	ENSMUSG00000037353.10	ENSMUST00000231001.2	2153	6	2656	6	3	-5	3prime_fragment	FALSE	canonical	3	112	junction_4	3.64005494464026	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTCTGGGAATTA	8375	False	NA	21	True	AGTAAA	-10	NA	100372943	100377039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ENSMUSG00000037353.10_25	chr15	+	1532	3	ISM	ENSMUSG00000037353.10	ENSMUST00000231001.2	2153	6	3196	6	543	-5	3prime_fragment	FALSE	canonical	3	112	junction_2	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTCTGGGAATTA	8915	False	NA	21	True	AGTAAA	-10	NA	100373483	100377039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100373536_100374670_100374768_100375656
ENSMUSG00000037353.10_28	chr15	+	1155	1	ISM	ENSMUSG00000037353.10	ENSMUST00000037001.10	2502	9	8981	6	1262	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTCTGGGAATTA	NA	False	NA	21	True	AGTAAA	-10	NA	100375884	100377039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100375900_100377000
ENSMUSG00000037353.10_3	chr15	+	2405	9	FSM	ENSMUSG00000037353.10	ENSMUST00000229648.2	1222	9	-100	-1083	-16	-5	multi-exon	FALSE	canonical	3	74	junction_1	16.3587705833904	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTCTGGGAATTA	2319	False	NA	21	True	AGTAAA	-10	NA	100366887	100377039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_100367020_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ENSMUSG00000037353.10_4	chr15	+	2276	8	FSM	ENSMUSG00000037353.10	ENSMUST00000230294.2	2266	8	-15	5	-3	-5	multi-exon	FALSE	canonical	3	29	junction_2	31.1808418417333	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTCTGGGAATTA	2332	False	NA	21	True	AGTAAA	-10	NA	100366900	100377039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_100367020_100367565_100367718_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ENSMUSG00000037353.10_8	chr15	+	2404	9	FSM	ENSMUSG00000037353.10	ENSMUST00000037001.10	2502	9	92	6	0	-5	multi-exon	FALSE	canonical	3	44	junction_1	24.1761116600664	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTCTGGGAATTA	2427	False	NA	21	True	AGTAAA	-10	NA	100366995	100377039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_100367127_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ENSMUSG00000037355.15_12	chr5	+	2694	14	FSM	ENSMUSG00000037355.15	ENSMUST00000087864.12	7326	14	-137	4769	10	4466	multi-exon	FALSE	canonical	1	2	junction_13	2.37342286469869	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCTGAGTAGAATCAGAG	NA	False	NA	NA	False	AATAGA	-4	NA	33535902	33572329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_33536347_33536569_33536670_33544999_33545331_33546059_33546181_33546985_33547382_33549087_33549201_33549399_33549529_33559837_33559944_33566152_33566325_33566770_33566894_33568202_33568387_33568904_33569017_33571242_33571418_33572141
ENSMUSG00000037361.9_0	chr12	+	752	4	FSM	ENSMUSG00000037361.9	ENSMUST00000046207.9	1180	4	27	401	-4	-8	multi-exon	FALSE	canonical	3	1039	junction_3	63.8609600790829	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTGTCTTCTGTTAAA	NA	False	NA	27	True	AATAAA	-17	NA	4867570	4877258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4867820_4870593_4870713_4876757_4876897_4877013
ENSMUSG00000037363.10_0	chr8	-	1967	11	NIC	ENSMUSG00000037363.10	novel	2126	11	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_10	3.68239052790439	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGTGTTCGAATGGCTT	2351	False	NA	NA	False	CATAAA	-13	NA	26087527	26068507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_26068821_26069735_26069811_26070331_26070425_26071688_26071803_26075364_26075485_26076622_26076824_26077311_26077450_26082467_26082612_26083734_26084183_26086377_26086462_26087290
ENSMUSG00000037363.10_8	chr8	-	2110	11	FSM	ENSMUSG00000037363.10	ENSMUST00000079160.8	2126	11	24	-8	-1	8	multi-exon	TRUE	canonical	0	0	junction_10	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAATGGCTTCCTGTTTGTG	2373	False	NA	NA	False	CATAAA	-23	NA	26087505	26068497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26068821_26069735_26069811_26070331_26070425_26071688_26071803_26075364_26075485_26076622_26076824_26077311_26077450_26082467_26082612_26083734_26084183_26086377_26086462_26087135
ENSMUSG00000037364.13_0	chr5	-	2973	20	FSM	ENSMUSG00000037364.13	ENSMUST00000199243.5	2988	20	11	4	11	0	multi-exon	FALSE	non_canonical	0	0	junction_3	194.772841622735	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8276	False	NA	-12	True	AGTAAA	-18	NA	137305917	137293976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137294169_137294248_137294355_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ENSMUSG00000037364.13_1	chr5	-	2994	20	FSM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	19	11	11	0	multi-exon	FALSE	non_canonical	0	0	junction_3	186.551382419291	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8276	False	NA	-12	True	AGTAAA	-18	NA	137305917	137293976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ENSMUSG00000037364.13_11	chr5	-	2982	20	NIC	ENSMUSG00000037364.13	novel	2972	20	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	165	junction_3	155.869662861488	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8276	False	NA	-12	True	AGTAAA	-18	NA	137305917	137293976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_137294169_137294248_137294376_137294479_137294570_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ENSMUSG00000037364.13_6	chr5	-	2961	20	FSM	ENSMUSG00000037364.13	ENSMUST00000197466.5	2972	20	11	0	11	0	multi-exon	FALSE	canonical	3	165	junction_3	165.9658376889	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8276	False	NA	-12	True	AGTAAA	-18	NA	137305917	137293976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137294169_137294248_137294355_137294479_137294570_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ENSMUSG00000037366.15_0	chr4	+	3084	11	FSM	ENSMUSG00000037366.15	ENSMUST00000105869.9	2248	11	80	-916	-7	-5	multi-exon	FALSE	canonical	3	35	junction_4	4.79687398208458	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGTCGCTGGCTGGCTTT	1859	False	NA	15	True	ATTAAA	-17	NA	134123710	134154719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134123736_134130280_134130416_134131403_134131555_134132316_134132414_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
ENSMUSG00000037366.15_12	chr4	+	6173	7	ISM	ENSMUSG00000037366.15	ENSMUST00000105870.8	3180	11	9936	5	4437	-5	3prime_fragment	FALSE	canonical	3	40	junction_6	2.92498812913071	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGTCGCTGGCTGGCTTT	6780	False	NA	15	True	ATTAAA	-17	NA	134134717	134154719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
ENSMUSG00000037366.15_2	chr4	+	2983	10	NIC	ENSMUSG00000037366.15	novel	2248	11	NA	NA	-7	-9	combination_of_known_junctions	FALSE	canonical	2	2	junction_3	13.8171480504087	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGAAGTCGCTGGCTGG	1859	False	NA	11	True	ATTAAA	-13	NA	134123710	134154715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_134123736_134130280_134130416_134131403_134131555_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
ENSMUSG00000037366.15_4	chr4	+	2859	9	NIC	ENSMUSG00000037366.15	novel	2248	11	NA	NA	3	-9	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	11.6270159542335	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGAAGTCGCTGGCTGG	1832	False	NA	11	True	ATTAAA	-13	NA	134123683	134154715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_134123736_134130280_134130416_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
ENSMUSG00000037369.18_0	chrX	+	5434	29	FSM	ENSMUSG00000037369.18	ENSMUST00000044484.13	5918	29	62	422	0	-422	multi-exon	FALSE	canonical	3	111	junction_13	32.5682955886706	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGTTTTCTATTGTTTG	NA	False	NA	2	True	ATTAAA	-15	NA	18028875	18145753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213_18113349_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
ENSMUSG00000037369.18_1	chrX	+	5592	30	NIC	ENSMUSG00000037369.18	novel	5918	29	NA	NA	-2	-422	combination_of_known_junctions	FALSE	canonical	3	16	junction_13	47.6051186808053	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGTTTTCTATTGTTTG	NA	False	NA	2	True	ATTAAA	-15	NA	18028873	18145753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213_18113349_18113805_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
ENSMUSG00000037369.18_11	chrX	+	5428	29	FSM	ENSMUSG00000037369.18	ENSMUST00000052368.9	5935	29	85	422	12	-422	multi-exon	FALSE	canonical	3	24	junction_28	44.1203710643637	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGTTTTCTATTGTTTG	NA	False	NA	2	True	ATTAAA	-15	NA	18028898	18145753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213_18113349_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143803_18144864
ENSMUSG00000037369.18_3	chrX	+	5452	29	NIC	ENSMUSG00000037369.18	novel	5918	29	NA	NA	2	-423	combination_of_known_junctions	FALSE	canonical	3	35	junction_12	44.6303982614943	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGAGTTTTCTATTGTTT	NA	False	NA	1	True	ATTAAA	-14	NA	18028877	18145752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113805_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
ENSMUSG00000037369.18_58	chrX	+	2830	13	ISM	ENSMUSG00000037369.18	ENSMUST00000225336.2	3219	17	8020	-632	6798	-422	3prime_fragment	FALSE	canonical	3	166	junction_2	27.5866060495548	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGTTTTCTATTGTTTG	NA	False	NA	2	True	ATTAAA	-15	NA	18120554	18145753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
ENSMUSG00000037369.18_6	chrX	+	5300	28	NIC	ENSMUSG00000037369.18	novel	5918	29	NA	NA	-2	-423	combination_of_known_junctions	FALSE	canonical	3	25	junction_12	40.8616387994563	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGAGTTTTCTATTGTTT	NA	False	NA	1	True	ATTAAA	-14	NA	18028873	18145752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
ENSMUSG00000037370.14_0	chr10	-	3118	25	FSM	ENSMUSG00000037370.14	ENSMUST00000105520.8	6777	25	162	3497	1	24	multi-exon	FALSE	canonical	0	0	junction_2	1.10554159678513	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATGGAAAATGGTT	7909	False	NA	NA	False	AATAAA	-38	NA	24587894	24517308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_24517875_24521175_24521339_24523050_24523184_24523914_24523996_24525141_24525272_24527142_24527295_24528732_24528785_24529800_24529968_24530785_24530874_24531700_24531771_24533002_24533131_24533736_24533769_24536047_24536180_24537764_24537874_24540452_24540526_24540808_24540875_24544906_24545017_24545577_24545698_24545840_24545921_24547912_24548011_24550512_24550574_24551875_24552002_24553810_24553928_24555085_24555159_24587703
ENSMUSG00000037373.13_0	chr5	-	2461	10	NIC	ENSMUSG00000037373.13	novel	2436	10	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	3	693	junction_8	73.9275588033129	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGGCACGCCTGGCACCA	NA	False	NA	-22	True	AATAAA	-13	NA	33432335	33405074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_33406031_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33426785_33426979_33432122
ENSMUSG00000037373.13_3	chr5	-	2458	10	FSM	ENSMUSG00000037373.13	ENSMUST00000202868.4	2436	10	1	-23	1	-8	multi-exon	FALSE	canonical	3	226	junction_1	199.225041809384	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGGCACGCCTGGCACCA	NA	False	NA	-22	True	AATAAA	-13	NA	33432335	33405074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_33406028_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33426785_33426979_33432122
ENSMUSG00000037373.13_5	chr5	-	2267	9	FSM	ENSMUSG00000037373.13	ENSMUST00000079746.10	2279	9	4	8	2	-8	multi-exon	FALSE	canonical	3	123	junction_8	242.929741643546	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGGCACGCCTGGCACCA	NA	False	NA	-22	True	AATAAA	-13	NA	33432334	33405074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_33406031_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33432122
ENSMUSG00000037373.13_9	chr5	-	2251	9	NIC	ENSMUSG00000037373.13	novel	2436	10	NA	NA	0	-12	combination_of_known_junctions	FALSE	canonical	3	123	junction_8	298.867759218019	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCCGGCACGCCTGGC	NA	False	NA	-26	True	AATAAA	-9	NA	33432325	33405078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_33406028_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33432122
ENSMUSG00000037375.17_1	chr1	-	2743	12	FSM	ENSMUSG00000037375.17	ENSMUST00000044190.12	2839	12	92	4	82	-4	multi-exon	FALSE	canonical	3	12	junction_1	5.12327374676559	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAAACACATGTGTCTTG	NA	False	NA	NA	False	AATAAA	-10	NA	192453439	192195139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_192196284_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192441978_192442109_192453287
ENSMUSG00000037375.17_4	chr1	-	2438	10	NNC	ENSMUSG00000037375.17	novel	2839	12	NA	NA	-4689	-4	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_9	7.09372875533883	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAAACACATGTGTCTTG	NA	False	NA	NA	False	AATAAA	-10	NA	192424277	192195139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_192196284_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192424232
ENSMUSG00000037376.15_0	chr2	-	2791	11	FSM	ENSMUSG00000037376.15	ENSMUST00000039554.7	2828	11	29	8	-12	-8	multi-exon	FALSE	canonical	3	339	junction_5	30.9683709613535	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCATAAGTCATTAATGAT	NA	False	NA	-20	True	AATAAA	-15	NA	132657945	132646134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
ENSMUSG00000037376.15_4	chr2	-	2913	11	FSM	ENSMUSG00000037376.15	ENSMUST00000147336.8	2948	11	27	8	-15	-8	multi-exon	FALSE	canonical	3	23	junction_6	111.30929880293	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCATAAGTCATTAATGAT	NA	False	NA	-20	True	AATAAA	-15	NA	132657948	132646134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652006_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
ENSMUSG00000037379.8_0	chr5	-	1756	6	FSM	ENSMUSG00000037379.8	ENSMUST00000046186.8	2045	6	282	7	12	0	multi-exon	FALSE	canonical	1	2	junction_2	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGTCAGAGGGTGACC	NA	False	NA	NA	False	AATAAA	-14	NA	33375517	33371277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_33371997_33372892_33373068_33373676_33373869_33373940_33374165_33374587_33374808_33375291
ENSMUSG00000037386.17_11	chr15	+	5520	26	FSM	ENSMUSG00000037386.17	ENSMUST00000227243.2	4760	26	-206	-554	-129	-53	multi-exon	FALSE	canonical	0	0	junction_5	13.0509156766872	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGACACAGATTAGCTGAA	NA	False	NA	4	True	ATTAAA	-15	NA	39061526	39545796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_39061934_39155496_39155708_39208705_39209017_39300392_39301319_39315619_39315829_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893_39326007_39335729_39335861_39339775_39339948_39341952_39342107_39370361_39370431_39373040_39373198_39374659_39374771_39398233_39398414_39399267_39399378_39430338_39430440_39448985_39449159_39479664_39479907_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ENSMUSG00000037386.17_12	chr15	+	4965	21	NIC	ENSMUSG00000037386.17	novel	4760	26	NA	NA	-3	1235	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	4.80078118643206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTCAAAATTACCTAATAT	NA	False	NA	NA	False	ATTAAA	-3	NA	39061723	39481041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_39061934_39155496_39155708_39208705_39209017_39300392_39301319_39315435_39315504_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893_39326007_39335729_39335861_39339775_39339948_39341952_39342107_39370361_39370431_39373040_39373198_39374659_39374771_39398233_39398414_39399267_39399378_39430338_39430440_39448985_39449159_39479664
ENSMUSG00000037386.17_16	chr15	+	1570	6	ISM	ENSMUSG00000037386.17	ENSMUST00000227381.2	4581	24	179300	49	29590	-49	3prime_fragment	FALSE	canonical	3	30	junction_1	8.62554346113913	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGATTAGCTGAATATT	NA	False	NA	8	True	ATTAAA	-19	NA	39479692	39545800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_39479907_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ENSMUSG00000037386.17_17	chr15	+	2152	6	NNC	ENSMUSG00000037386.17	novel	4800	27	NA	NA	-12099	645	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	16.4608626748418	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGGCATTGTAATGTCCA	NA	False	NA	NA	False	AAGAAA	-12	NA	39510862	39546494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_39510965_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ENSMUSG00000037386.17_19	chr15	+	1646	6	FSM	ENSMUSG00000037386.17	ENSMUST00000226410.2	3685	6	158	1881	158	38	multi-exon	FALSE	canonical	3	7	junction_1	17.2348484182484	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATTTATATTATTTTTAA	NA	False	NA	95	True	NA	NA	NA	39523119	39545887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_39523323_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ENSMUSG00000037386.17_4	chr15	+	5554	27	NIC	ENSMUSG00000037386.17	novel	4800	27	NA	NA	-213	-49	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	12.5401131521937	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGATTAGCTGAATATT	NA	False	NA	8	True	ATTAAA	-19	NA	39061442	39545800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_39061934_39138808_39138896_39155496_39155708_39208705_39209017_39300392_39301319_39315435_39315504_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893_39326007_39335729_39335861_39339775_39339948_39341952_39342107_39370361_39370431_39373040_39373198_39374659_39374771_39398233_39398414_39399267_39399378_39430338_39430440_39448985_39449159_39479664_39479907_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ENSMUSG00000037386.17_48	chr15	+	1816	1	ISM	ENSMUSG00000037386.17	ENSMUST00000226410.2	3685	6	22989	2	22989	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATATGTTGTTGAGGGTGC	NA	False	NA	2	True	AATAAA	-12	NA	39545950	39547766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_39546000_39547800
ENSMUSG00000037386.17_5	chr15	+	5611	27	NIC	ENSMUSG00000037386.17	novel	4719	27	NA	NA	-193	37	combination_of_known_junctions	FALSE	canonical	2	6	junction_20	12.048717675883	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATTTATATTATTTTTA	NA	False	NA	94	True	NA	NA	NA	39061462	39545886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_39061934_39155496_39155708_39208705_39209017_39300392_39301319_39315435_39315504_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893_39326007_39335729_39335861_39339775_39339948_39341952_39342107_39370361_39370431_39373040_39373198_39374659_39374771_39398233_39398414_39399267_39399378_39430338_39430440_39448985_39449159_39473459_39473538_39479664_39479907_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ENSMUSG00000037386.17_8	chr15	+	5114	25	NIC	ENSMUSG00000037386.17	novel	4760	26	NA	NA	-25	37	combination_of_known_junctions	FALSE	canonical	1	4	junction_16	12.0439011767598	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATTTATATTATTTTTA	NA	False	NA	94	True	NA	NA	NA	39061701	39545886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_39061934_39155496_39155708_39208705_39209017_39300392_39301319_39315435_39315504_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893_39326007_39335729_39335861_39339775_39339948_39341952_39342107_39370361_39370431_39373040_39373198_39374659_39374771_39399267_39399378_39430338_39430440_39448985_39449159_39479664_39479907_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ENSMUSG00000037386.17_9	chr15	+	5261	26	NIC	ENSMUSG00000037386.17	novel	4760	26	NA	NA	-7	-49	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	11.0478233150245	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGATTAGCTGAATATT	NA	False	NA	8	True	ATTAAA	-19	NA	39061648	39545800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_39061934_39155496_39155708_39208705_39209017_39300392_39301319_39315435_39315504_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893_39326007_39335729_39335861_39339775_39339948_39341952_39342107_39370361_39370431_39373040_39373198_39374659_39374771_39398233_39398414_39399267_39399378_39430338_39430440_39448985_39449159_39479664_39479907_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ENSMUSG00000037395.17_0	chr1	-	3524	10	FSM	ENSMUSG00000037395.17	ENSMUST00000073279.13	3748	10	14	210	0	0	multi-exon	FALSE	canonical	1	2	junction_1	12.9109007441267	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTCTTCTATTTTTAT	NA	False	NA	-1	True	ATTAAA	-13	NA	191822323	191783070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191785456_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ENSMUSG00000037395.17_1	chr1	-	3808	12	FSM	ENSMUSG00000037395.17	ENSMUST00000192866.6	1844	12	52	-2016	0	0	multi-exon	FALSE	canonical	3	28	junction_1	6.62077871128477	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTCTTCTATTTTTAT	NA	False	NA	-1	True	ATTAAA	-13	NA	191822307	191783070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191785456_191785925_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ENSMUSG00000037395.17_12	chr1	-	1605	10	FSM	ENSMUSG00000037395.17	ENSMUST00000192491.6	1623	10	13	5	-3	-1	multi-exon	FALSE	canonical	2	7	junction_1	11.5373788665845	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTGTTGGGTTTTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	191822310	191785688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191786168_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ENSMUSG00000037395.17_13	chr1	-	1489	7	ISM	ENSMUSG00000037395.17	ENSMUST00000192491.6	1623	10	-8	21516	1	4946	5prime_fragment	FALSE	canonical	3	31	junction_4	6.80685928555405	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGTAGAGTTTCTGGT	NA	False	NA	NA	False	ATTAAA	-17	NA	191822331	191807199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ENSMUSG00000037395.17_14	chr1	-	3266	1	NIC	ENSMUSG00000037395.17	novel	3791	11	NA	NA	192	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTATTTATATATAAAC	NA	False	NA	NA	False	AATAAA	-18	NA	191821768	191818502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_191818500_191821800
ENSMUSG00000037395.17_2	chr1	-	2075	1	ISM	ENSMUSG00000037395.17	ENSMUST00000110849.10	3791	11	37162	225	8006	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTCTTCTATTTTTAT	6257	False	NA	-1	True	ATTAAA	-13	NA	191785145	191783070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_191783100_191785100
ENSMUSG00000037395.17_24	chr1	-	1803	11	FSM	ENSMUSG00000037395.17	ENSMUST00000192128.6	1578	11	-113	-112	0	108	multi-exon	FALSE	canonical	3	29	junction_1	6.37887137352682	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTGGTTTTATTTGTT	NA	False	NA	NA	False	AATAAA	-39	NA	191822337	191785575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ENSMUSG00000037395.17_4	chr1	-	3750	11	NIC	ENSMUSG00000037395.17	novel	1844	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_2	11.1449540151586	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTCTTCTATTTTTAT	NA	False	NA	-1	True	ATTAAA	-13	NA	191822307	191783070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_191785456_191785925_191786168_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ENSMUSG00000037395.17_7	chr1	-	3434	8	ISM	ENSMUSG00000037395.17	ENSMUST00000192866.6	1844	12	12166	-2236	-1608	-5	3prime_fragment	FALSE	canonical	3	28	junction_1	4.79370335301786	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATTAACGAAAAAGTAT	NA	False	NA	NA	False	AATAAA	-22	NA	191810193	191782850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_191785456_191785925_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165
ENSMUSG00000037395.17_9	chr1	-	3564	11	FSM	ENSMUSG00000037395.17	ENSMUST00000110849.10	3791	11	0	227	0	-2	multi-exon	FALSE	canonical	1	1	junction_1	12.5143917151414	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATGTCTTCTATTTTT	NA	False	NA	-3	True	ATTAAA	-11	NA	191822307	191783072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191785456_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
ENSMUSG00000037400.18_2	chr3	+	4883	30	FSM	ENSMUSG00000037400.18	ENSMUST00000029257.15	4868	30	-20	5	8	0	multi-exon	FALSE	canonical	2	274	junction_18	53.5097310762941	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCCTGTTGTTGCATG	NA	False	NA	6	True	AATAAA	-12	NA	35808262	35910420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35891739_35893197_35893364_35903582_35903714_35909253
ENSMUSG00000037400.18_5	chr3	+	6341	29	FSM	ENSMUSG00000037400.18	ENSMUST00000196700.5	6322	29	-19	0	9	0	multi-exon	FALSE	canonical	2	274	junction_18	53.267171706715	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCCTGTTGTTGCATG	NA	False	NA	6	True	AATAAA	-12	NA	35808263	35910420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35893364_35903582_35903714_35909253
ENSMUSG00000037405.9_0	chr9	+	2527	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	2	6	2	-6	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	703	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCTTGTGAGTTTGT	NA	False	NA	10	True	AATAAA	-15	NA	20927282	20940107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
ENSMUSG00000037406.8_0	chr8	-	1867	9	FSM	ENSMUSG00000037406.8	ENSMUST00000084031.6	2180	9	313	0	313	0	multi-exon	FALSE	canonical	0	0	junction_1	1.26861144563653	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGACTTTTTACTCAGGT	NA	False	NA	NA	False	ATTAAA	-19	NA	25528665	25514944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_25515751_25519644_25519741_25520114_25520173_25520527_25520643_25522975_25523009_25523579_25523775_25527004_25527210_25527954_25528055_25528406
ENSMUSG00000037408.11_0	chr1	+	1759	1	ISM	ENSMUSG00000037408.11	ENSMUST00000153128.2	4547	7	35380	6	35004	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAAGTTTTGGTGAGCAT	NA	False	NA	NA	False	AATAAA	-12	NA	36546080	36547839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_36546100_36547800
ENSMUSG00000037410.14_0	chr9	-	2164	1	ISM	ENSMUSG00000037410.14	ENSMUST00000041767.14	5956	13	66545	34	51703	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGCCTCAAAAGGTAGG	NA	False	NA	-34	True	AATAAA	-15	NA	90086277	90084113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_90084100_90086300
ENSMUSG00000037410.14_2	chr9	-	5859	14	NNC	ENSMUSG00000037410.14	novel	5956	13	NA	NA	8	-34	intron_retention	FALSE	canonical	0	0	junction_1	19.324999904315	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGCCTCAAAAGGTAGG	NA	False	NA	-34	True	AATAAA	-15	NA	90152814	90084113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_90086446_90086500_90087276_90089825_90089948_90091720_90091907_90097530_90097649_90100712_90101208_90104359_90104554_90105491_90105603_90108073_90108458_90109382_90109628_90110990_90111155_90123062_90123232_90131843_90131998_90152404
ENSMUSG00000037410.14_22	chr9	-	2207	4	ISM	ENSMUSG00000037410.14	ENSMUST00000144348.8	655	5	49	-1431	14	1431	intron_retention	FALSE	canonical	3	61	junction_1	8.60232526704263	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90152808	90109674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_90111155_90123062_90123232_90131843_90131998_90152404
ENSMUSG00000037410.14_23	chr9	-	3477	3	FSM	ENSMUSG00000037410.14	ENSMUST00000128874.3	3473	3	0	-4	0	4	multi-exon	FALSE	canonical	3	73	junction_2	4.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTTCAGACATAACTTT	NA	False	NA	NA	False	AATAAA	-22	NA	90152824	90120328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_90123232_90131843_90131998_90152404
ENSMUSG00000037410.14_3	chr9	-	5914	13	FSM	ENSMUSG00000037410.14	ENSMUST00000041767.14	5956	13	6	36	6	-36	multi-exon	FALSE	canonical	3	55	junction_2	8.96714682729251	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTCTGCCTCAAAAGGTA	NA	False	NA	-36	True	AATAAA	-13	NA	90152816	90084115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_90087276_90089825_90089948_90091720_90091907_90097530_90097649_90100712_90101208_90104359_90104554_90105491_90105603_90108073_90108458_90109382_90109628_90110990_90111155_90123062_90123232_90131843_90131998_90152404
ENSMUSG00000037410.14_6	chr9	-	5629	13	NIC	ENSMUSG00000037410.14	novel	5956	13	NA	NA	-12	-24	combination_of_known_splicesites	FALSE	canonical	2	4	junction_12	18.7387002988171	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTAGGTGTAGTCATT	NA	False	NA	-24	True	AATAAA	-25	NA	90152836	90084103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_90087276_90089825_90089948_90091720_90091907_90097530_90097649_90100712_90101208_90104359_90104554_90105491_90105603_90108073_90108458_90109382_90109628_90110990_90111155_90123062_90123232_90131843_90131998_90152721
ENSMUSG00000037415.8_0	chr8	-	5160	14	FSM	ENSMUSG00000037415.8	ENSMUST00000239468.2	5308	14	143	5	-2	-5	multi-exon	FALSE	canonical	3	41	junction_3	8.84180495107755	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAATTGTGTCTGTTGTTC	NA	False	NA	-6	True	ATTAAA	-14	NA	106553839	106494944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106498350_106498726_106498839_106499080_106499227_106499669_106499792_106500540_106500746_106500918_106501068_106501166_106501276_106502591_106502705_106506458_106506644_106508911_106508935_106513258_106513427_106532163_106532217_106552709_106552822_106553581
ENSMUSG00000037415.8_1	chr8	-	1895	1	ISM	ENSMUSG00000037415.8	ENSMUST00000239468.2	5308	14	57143	5	56998	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAATTGTGTCTGTTGTTC	NA	False	NA	-6	True	ATTAAA	-14	NA	106496839	106494944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106494900_106496800
ENSMUSG00000037415.8_10	chr8	-	4456	9	ISM	ENSMUSG00000037415.8	ENSMUST00000239468.2	5308	14	47429	5	47284	-5	3prime_fragment	FALSE	canonical	3	41	junction_3	8.69536514471934	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAATTGTGTCTGTTGTTC	NA	False	NA	-6	True	ATTAAA	-14	NA	106506553	106494944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106498350_106498726_106498839_106499080_106499227_106499669_106499792_106500540_106500746_106500918_106501068_106501166_106501276_106502591_106502705_106506458
ENSMUSG00000037415.8_15	chr8	-	3745	4	ISM	ENSMUSG00000037415.8	ENSMUST00000239468.2	5308	14	54231	5	54086	-5	3prime_fragment	FALSE	canonical	3	41	junction_3	6.54896090146283	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAATTGTGTCTGTTGTTC	NA	False	NA	-6	True	ATTAAA	-14	NA	106499751	106494944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106498350_106498726_106498839_106499080_106499227_106499669
ENSMUSG00000037415.8_7	chr8	-	4661	11	ISM	ENSMUSG00000037415.8	ENSMUST00000239468.2	5308	14	40632	5	40487	-5	3prime_fragment	FALSE	canonical	3	41	junction_3	7.79037868142493	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAATTGTGTCTGTTGTTC	NA	False	NA	-6	True	ATTAAA	-14	NA	106513350	106494944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106498350_106498726_106498839_106499080_106499227_106499669_106499792_106500540_106500746_106500918_106501068_106501166_106501276_106502591_106502705_106506458_106506644_106508911_106508935_106513258
ENSMUSG00000037416.14_18	chr18	+	8884	32	ISM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	32091	1	-29335	-1	3prime_fragment	FALSE	canonical	3	63	junction_8	21.6823631075388	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTCGCATGCTTTTG	NA	False	NA	13	True	AATAAA	-14	NA	49997827	50097320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_49998062_49998149_49998272_50000871_50000962_50001041_50001145_50003939_50004060_50004636_50004859_50010749_50012433_50013801_50013910_50021782_50021953_50022529_50022628_50023682_50023849_50024457_50024720_50026285_50027365_50028048_50028241_50031770_50031848_50035327_50035456_50035846_50036096_50045709_50045865_50050645_50050789_50052954_50053041_50053896_50054099_50055664_50055783_50064977_50065065_50067650_50067773_50068258_50068401_50072615_50072677_50084262_50084391_50088883_50088977_50090368_50090461_50091463_50091517_50094124_50094343_50095239
ENSMUSG00000037416.14_22	chr18	+	7513	26	ISM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	45491	3	-15935	-3	3prime_fragment	FALSE	canonical	3	63	junction_2	19.7331801795859	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTTTTTCGCATGCTTT	9968	False	NA	11	True	AATAAA	-12	NA	50011227	50097318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_50012433_50013801_50013910_50021782_50021953_50022529_50022628_50023682_50023849_50024457_50024720_50026285_50027365_50028048_50028241_50031770_50031848_50035327_50035456_50035846_50036096_50045709_50045865_50050645_50050789_50052954_50053041_50053896_50054099_50055664_50055783_50064977_50065065_50067650_50067773_50068258_50068401_50072615_50072677_50084262_50084391_50088883_50088977_50090368_50090461_50091463_50091517_50094124_50094343_50095239
ENSMUSG00000037416.14_25	chr18	+	5919	22	ISM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	57957	5	-3469	-5	3prime_fragment	FALSE	canonical	3	97	junction_6	12.9117008229199	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGATTTTTTTCGCATGCT	3950	False	NA	9	True	AATAAA	-10	NA	50023693	50097316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_50023849_50024457_50024720_50026285_50027365_50028048_50028241_50031770_50031848_50035327_50035456_50035846_50036096_50045709_50045865_50050645_50050789_50052954_50053041_50053896_50054099_50055664_50055783_50064977_50065065_50067650_50067773_50068258_50068401_50072615_50072677_50084262_50084391_50088883_50088977_50090368_50090461_50091463_50091517_50094124_50094343_50095239
ENSMUSG00000037416.14_27	chr18	+	5006	20	ISM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	61045	5	-381	-5	3prime_fragment	FALSE	canonical	3	97	junction_4	13.3221328764103	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGATTTTTTTCGCATGCT	486	False	NA	9	True	AATAAA	-10	NA	50026781	50097316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_50027365_50028048_50028241_50031770_50031848_50035327_50035456_50035846_50036096_50045709_50045865_50050645_50050789_50052954_50053041_50053896_50054099_50055664_50055783_50064977_50065065_50067650_50067773_50068258_50068401_50072615_50072677_50084262_50084391_50088883_50088977_50090368_50090461_50091463_50091517_50094124_50094343_50095239
ENSMUSG00000037416.14_33	chr18	+	3881	16	ISM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	70259	1	8833	-1	3prime_fragment	FALSE	canonical	3	98	junction_1	12.1647943764875	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTCGCATGCTTTTG	4685	False	NA	13	True	AATAAA	-14	NA	50035995	50097320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_50036096_50045709_50045865_50050645_50050789_50052954_50053041_50053896_50054099_50055664_50055783_50064977_50065065_50067650_50067773_50068258_50068401_50072615_50072677_50084262_50084391_50088883_50088977_50090368_50090461_50091463_50091517_50094124_50094343_50095239
ENSMUSG00000037416.14_35	chr18	+	3700	15	ISM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	80050	5	-9993	-5	3prime_fragment	FALSE	canonical	3	108	junction_3	10.3094963158107	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGATTTTTTTCGCATGCT	6952	False	NA	9	True	AATAAA	-10	NA	50045786	50097316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_50045865_50050645_50050789_50052954_50053041_50053896_50054099_50055664_50055783_50064977_50065065_50067650_50067773_50068258_50068401_50072615_50072677_50084262_50084391_50088883_50088977_50090368_50090461_50091463_50091517_50094124_50094343_50095239
ENSMUSG00000037416.14_36	chr18	+	3550	14	ISM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	84985	1	-5058	-1	3prime_fragment	FALSE	canonical	3	108	junction_2	10.663769330371	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTCGCATGCTTTTG	NA	False	NA	13	True	AATAAA	-14	NA	50050721	50097320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_50050789_50052954_50053041_50053896_50054099_50055664_50055783_50064977_50065065_50067650_50067773_50068258_50068401_50072615_50072677_50084262_50084391_50088883_50088977_50090368_50090461_50091463_50091517_50094124_50094343_50095239
ENSMUSG00000037416.14_44	chr18	+	176	1	FSM	ENSMUSG00000037416.14	ENSMUST00000181042.2	3669	1	323	3170	323	1762	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAACAACAACAAAAAAAG	5457	False	NA	NA	False	NA	NA	NA	50089364	50089540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_50089400_50089500
ENSMUSG00000037416.14_47	chr18	+	1776	1	ISM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	129808	1	6503	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTCGCATGCTTTTG	NA	False	NA	13	True	AATAAA	-14	NA	50095544	50097320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_50095500_50097300
ENSMUSG00000037416.14_5	chr18	+	11324	43	FSM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	-10	5	-10	-5	multi-exon	TRUE	canonical	3	56	junction_4	23.9744407551836	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGATTTTTTTCGCATGCT	NA	False	NA	9	True	AATAAA	-10	NA	49965726	50097316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_49966244_49973453_49973580_49976852_49976925_49979651_49979731_49981734_49981862_49984496_49984564_49985312_49985492_49990299_49990490_49992182_49992352_49995971_49996185_49997014_49997269_49997376_49998062_49998149_49998272_50000871_50000962_50001041_50001145_50003939_50004060_50004636_50004859_50010749_50012433_50013801_50013910_50021782_50021953_50022529_50022628_50023682_50023849_50024457_50024720_50026285_50027365_50028048_50028241_50031770_50031848_50035327_50035456_50035846_50036096_50045709_50045865_50050645_50050789_50052954_50053041_50053896_50054099_50055664_50055783_50064977_50065065_50067650_50067773_50068258_50068401_50072615_50072677_50084262_50084391_50088883_50088977_50090368_50090461_50091463_50091517_50094124_50094343_50095239
ENSMUSG00000037419.10_0	chr9	-	4220	2	FSM	ENSMUSG00000037419.10	ENSMUST00000167549.2	4470	2	230	20	-29	-20	multi-exon	FALSE	canonical	3	20	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCACTGGTTCTGTGGGCT	NA	False	NA	-20	True	NA	NA	NA	14292308	14265305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_14269184_14291966
ENSMUSG00000037419.10_1	chr9	-	3073	1	ISM	ENSMUSG00000037419.10	ENSMUST00000167549.2	4470	2	24160	20	23901	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCACTGGTTCTGTGGGCT	7600	False	NA	-20	True	NA	NA	NA	14268378	14265305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_14265300_14268400
ENSMUSG00000037426.19_15	chr5	+	5301	42	NIC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	1	9	combination_of_known_junctions	FALSE	canonical	3	49	junction_32	30.4982031048296	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCCTCCCTCTCTCCC	2027	False	NA	16	True	AATAAA	-17	NA	33021078	33149014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_33021166_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ENSMUSG00000037426.19_3	chr5	+	5307	43	NIC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	4	9	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	26.9931964217138	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCCTCCCTCTCTCCC	2009	False	NA	16	True	AATAAA	-17	NA	33021060	33149014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_33021088_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ENSMUSG00000037426.19_4	chr5	+	5461	44	NIC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	-3	9	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	36.5368450911651	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCCTCCCTCTCTCCC	2010	False	NA	16	True	AATAAA	-17	NA	33021061	33149014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_33021088_33021501_33021657_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ENSMUSG00000037426.19_52	chr5	+	5366	43	FSM	ENSMUSG00000037426.19	ENSMUST00000119705.8	7929	43	2	2561	2	9	multi-exon	FALSE	canonical	3	86	junction_1	24.5195673630974	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCCTCCCTCTCTCCC	2028	False	NA	16	True	AATAAA	-17	NA	33021079	33149014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_33021166_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ENSMUSG00000037426.19_8	chr5	+	5244	42	NIC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	0	8	combination_of_known_junctions	TRUE	canonical	3	49	junction_32	32.536676783431	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTCCCTCCCTCTCTCC	2005	False	NA	15	True	AATAAA	-16	NA	33021056	33149013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_33021088_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
ENSMUSG00000037434.8_1	chr1	+	2083	2	FSM	ENSMUSG00000037434.8	ENSMUST00000044954.7	5244	2	17	3144	17	930	multi-exon	FALSE	canonical	3	88	junction_1	0	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTCTCTGCTTTTCTTCC	NA	False	NA	2	True	AATAAA	-12	NA	191638895	191642215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_191639726_191640962
ENSMUSG00000037434.8_6	chr1	+	2598	1	ISM	ENSMUSG00000037434.8	ENSMUST00000044954.7	5244	2	3855	28	3366	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTAGAAAAATAAACTAAT	NA	False	NA	-1	True	ATTAAA	-5	NA	191642733	191645331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_191642700_191645300
ENSMUSG00000037440.9_0	chr10	+	2241	7	FSM	ENSMUSG00000037440.9	ENSMUST00000041416.8	2416	7	166	9	0	-9	multi-exon	FALSE	canonical	0	0	junction_4	1.59861050777091	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGTCCAGTCTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	23770751	23781232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_23770990_23773190_23773322_23774305_23774499_23775291_23775584_23776482_23776842_23779283_23779455_23780375
ENSMUSG00000037443.14_1	chr4	-	3824	14	FSM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	61	8	0	0	multi-exon	FALSE	canonical	3	315	junction_5	49.639648211447	805	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAACACTCCGGTTTCCT	NA	False	NA	NA	False	AATAAA	-7	NA	133914362	133857176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
ENSMUSG00000037447.17_0	chr1	+	2223	7	FSM	ENSMUSG00000037447.17	ENSMUST00000126413.8	870	7	-31	-1322	-31	-1	multi-exon	FALSE	canonical	2	2	junction_1	8.27479439153761	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCCTGGGGTGTACAGC	NA	False	NA	NA	False	AATAAA	-22	NA	36346782	36359606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_36346918_36355292_36355409_36356284_36356406_36356690_36356744_36357164_36357263_36357568_36357735_36358072
ENSMUSG00000037447.17_13	chr1	+	1994	5	FSM	ENSMUSG00000037447.17	ENSMUST00000137906.2	5504	5	4	3506	0	-3	multi-exon	FALSE	canonical	0	0	junction_2	7.79021822544144	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCCCTGGGGTGTACA	NA	False	NA	NA	False	AATAAA	-20	NA	36346838	36359604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_36346918_36355289_36355409_36357164_36357263_36357568_36357735_36358072
ENSMUSG00000037447.17_2	chr1	+	2172	7	FSM	ENSMUSG00000037447.17	ENSMUST00000115032.8	4640	7	2	2466	2	-1	multi-exon	FALSE	canonical	3	8	junction_1	6.46572158042361	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCCTGGGGTGTACAGC	NA	False	NA	NA	False	AATAAA	-22	NA	36346836	36359606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_36346918_36355289_36355409_36356284_36356406_36356690_36356744_36357164_36357263_36357568_36357735_36358072
ENSMUSG00000037447.17_8	chr1	+	2049	6	FSM	ENSMUSG00000037447.17	ENSMUST00000116629.9	2056	6	2	5	2	-3	multi-exon	FALSE	canonical	3	6	junction_2	8.63481325796916	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCCCTGGGGTGTACA	NA	False	NA	NA	False	AATAAA	-20	NA	36346836	36359604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_36346918_36355289_36355409_36356690_36356744_36357164_36357263_36357568_36357735_36358072
ENSMUSG00000037455.17_10	chr10	+	2657	13	NIC	ENSMUSG00000037455.17	novel	2837	14	NA	NA	19	-4	combination_of_known_junctions	FALSE	canonical	3	35	junction_5	23.1336695460678	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATTCATTGTATTCATT	NA	False	NA	20	True	AATAAA	-13	NA	23672902	23703862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23681790_23681939_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
ENSMUSG00000037455.17_2	chr10	+	2814	14	FSM	ENSMUSG00000037455.17	ENSMUST00000119597.8	2837	14	19	4	19	-4	multi-exon	FALSE	canonical	3	72	junction_6	14.8148334428987	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATTCATTGTATTCATT	NA	False	NA	20	True	AATAAA	-13	NA	23672902	23703862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23681790_23681939_23686686_23686844_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
ENSMUSG00000037455.17_21	chr10	+	2766	14	NIC	ENSMUSG00000037455.17	novel	2837	14	NA	NA	18	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	40.4205700752365	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATTCATTGTATTCATT	NA	False	NA	20	True	AATAAA	-13	NA	23672901	23703862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23680935_23681044_23681790_23681939_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
ENSMUSG00000037455.17_24	chr10	+	2922	15	NIC	ENSMUSG00000037455.17	novel	2837	14	NA	NA	19	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	36.5510545926754	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATTCATTGTATTCATT	NA	False	NA	20	True	AATAAA	-13	NA	23672902	23703862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23680935_23681044_23681790_23681939_23686686_23686844_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
ENSMUSG00000037458.16_0	chr15	-	4058	12	FSM	ENSMUSG00000037458.16	ENSMUST00000065308.13	4871	12	2	811	-1	0	multi-exon	FALSE	canonical	2	359	junction_2	59.7608180323933	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTTACTTTGATGGCTT	NA	False	NA	-8	True	GATAAA	-16	NA	38519508	38488481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
ENSMUSG00000037458.16_1	chr15	-	4264	13	FSM	ENSMUSG00000037458.16	ENSMUST00000110329.8	4217	13	-1	-46	-1	46	multi-exon	FALSE	canonical	0	0	junction_10	173.208669112015	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTGATTTTGTGTATA	NA	False	NA	-10	True	AATAGA	-12	NA	38519508	38488435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
ENSMUSG00000037458.16_10	chr15	-	3850	12	NNC	ENSMUSG00000037458.16	novel	4871	12	NA	NA	1	39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	146.944696405324	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTATGAATTGATTTT	NA	False	NA	-17	True	AATAGA	-5	NA	38519509	38488442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_38490624_38491874_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
ENSMUSG00000037458.16_11	chr15	-	4257	12	NIC	ENSMUSG00000037458.16	novel	4109	12	NA	NA	1	46	combination_of_known_junctions	FALSE	canonical	2	46	junction_7	133.945283018758	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTGATTTTGTGTATA	NA	False	NA	-10	True	AATAGA	-12	NA	38519509	38488435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497795_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
ENSMUSG00000037458.16_3	chr15	-	1574	1	ISM	ENSMUSG00000037458.16	ENSMUST00000065308.13	4871	12	29504	762	4624	49	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGATTTTGTGTATATTG	NA	False	NA	-7	True	AATAGA	-15	NA	38490006	38488432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_38488400_38490000
ENSMUSG00000037458.16_6	chr15	-	4101	12	NIC	ENSMUSG00000037458.16	novel	4871	12	NA	NA	-1	46	combination_of_known_junctions	FALSE	canonical	2	62	junction_3	129.988874285519	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTGATTTTGTGTATA	NA	False	NA	-10	True	AATAGA	-12	NA	38519508	38488435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_38490717_38491719_38491935_38492487_38492601_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
ENSMUSG00000037461.11_0	chr1	+	3368	20	FSM	ENSMUSG00000037461.11	ENSMUST00000045450.7	5347	20	126	1853	0	189	multi-exon	FALSE	canonical	2	189	junction_14	33.0659544051011	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCAGTCTTCTGTCTCA	8319	False	NA	NA	False	NA	NA	NA	191307873	191353947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
ENSMUSG00000037461.11_2	chr1	+	4159	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	0	-72	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	65.9688562884032	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTGTTTTACCTTTTT	8319	False	NA	26	True	AATAAA	-15	NA	191307873	191354786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276_191353908_191353955
ENSMUSG00000037463.15_0	chr7	+	1248	6	NIC	ENSMUSG00000037463.15	novel	1946	6	NA	NA	-68	-2	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	19.975985582694	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGGTTTTTTTTGTTTGT	8777	False	NA	NA	False	GATAAA	-15	NA	28392205	28397384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28392398_28392694_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397053
ENSMUSG00000037463.15_10	chr7	+	4413	3	NIC	ENSMUSG00000037463.15	novel	2031	5	NA	NA	78	0	intron_retention	FALSE	canonical	3	57	junction_2	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTTCATATCTTTTT	9218	False	NA	NA	False	AATAAA	-16	NA	28392646	28398760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28394268_28394430_28394527_28396064
ENSMUSG00000037463.15_2	chr7	+	1963	6	NIC	ENSMUSG00000037463.15	novel	1946	6	NA	NA	-18	-1	combination_of_known_junctions	TRUE	canonical	3	31	junction_1	12.2637677734047	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGGTTCATATCTTTT	8827	False	NA	NA	False	AATAAA	-15	NA	28392255	28398759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28392398_28392694_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397663
ENSMUSG00000037463.15_3	chr7	+	3427	5	NIC	ENSMUSG00000037463.15	novel	1948	5	NA	NA	-18	0	intron_retention	FALSE	canonical	3	31	junction_1	13.6656503687164	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTTCATATCTTTTT	8827	False	NA	NA	False	AATAAA	-16	NA	28392255	28398760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28392398_28392694_28393076_28394155_28394268_28394430_28394527_28396064
ENSMUSG00000037463.15_7	chr7	+	1823	5	FSM	ENSMUSG00000037463.15	ENSMUST00000108281.8	1948	5	125	0	125	0	multi-exon	FALSE	canonical	3	43	junction_1	9.31396800509858	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTTCATATCTTTTT	9265	False	NA	NA	False	AATAAA	-16	NA	28392693	28398760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397663
ENSMUSG00000037465.11_0	chr15	-	3039	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	2	3	2	0	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	4696	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTGAGTCTGTTGT	NA	False	NA	-10	True	AATAAA	-15	NA	38300948	38294659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
ENSMUSG00000037466.14_1	chr12	+	3344	8	FSM	ENSMUSG00000037466.14	ENSMUST00000049271.13	2441	8	1	-904	1	-600	multi-exon	FALSE	canonical	3	152	junction_3	28.4088230043027	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCGGAACGCTTGAGTG	NA	False	NA	NA	False	TTTAAA	-26	NA	113120041	113129068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
ENSMUSG00000037466.14_15	chr12	+	3443	8	ISM	ENSMUSG00000037466.14	ENSMUST00000196755.5	4000	9	-10	600	0	-600	intron_retention	FALSE	canonical	3	15	junction_3	72.3201499005129	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCGGAACGCTTGAGTG	NA	False	NA	NA	False	TTTAAA	-26	NA	113120049	113129068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_113120192_113120294_113120374_113120780_113120984_113121090_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
ENSMUSG00000037466.14_4	chr12	+	3147	7	NIC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	-5	-600	intron_retention	FALSE	canonical	3	28	junction_2	73.0032343271325	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCGGAACGCTTGAGTG	NA	False	NA	NA	False	TTTAAA	-26	NA	113120035	113129068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_113120192_113120294_113120374_113121197_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
ENSMUSG00000037466.14_41	chr12	+	1969	1	NIC	ENSMUSG00000037466.14	novel	4000	9	NA	NA	5909	-600	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCGGAACGCTTGAGTG	NA	False	NA	NA	False	TTTAAA	-26	NA	113127099	113129068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_113127100_113129100
ENSMUSG00000037466.14_5	chr12	+	3965	6	NIC	ENSMUSG00000037466.14	novel	4000	9	NA	NA	1	-600	intron_retention	FALSE	canonical	3	190	junction_4	20.4117613154769	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCGGAACGCTTGAGTG	NA	False	NA	NA	False	TTTAAA	-26	NA	113120041	113129068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_113120192_113120294_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
ENSMUSG00000037469.12_1	chr7	-	4902	13	FSM	ENSMUSG00000037469.12	ENSMUST00000159560.3	2207	13	-55	-2640	-55	2640	multi-exon	FALSE	canonical	0	0	junction_12	2.27760839478607	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTACATTTGTTTGT	8705	False	NA	NA	False	NA	NA	NA	28330048	28304060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28307431_28310410_28310549_28313643_28313716_28313817_28313886_28313960_28314019_28314104_28314213_28314285_28314401_28314497_28314561_28314788_28314913_28315905_28316089_28316477_28316679_28328883_28329136_28329898
ENSMUSG00000037470.15_4	chr1	-	5526	40	NIC	ENSMUSG00000037470.15	novel	9033	41	NA	NA	21	-3	combination_of_known_junctions	FALSE	canonical	3	115	junction_20	72.0100347306307	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAATGTGTGCTTTTTC	NA	False	NA	-8	True	NA	NA	NA	36283365	36182569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215313_36215409_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250470_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
ENSMUSG00000037470.15_57	chr1	-	3678	25	ISM	ENSMUSG00000037470.15	ENSMUST00000174266.8	5399	40	58301	3	-3226	-3	3prime_fragment	FALSE	canonical	3	115	junction_20	62.9759654330303	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAATGTGTGCTTTTTC	NA	False	NA	-8	True	NA	NA	NA	36224941	36182569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215313_36215409_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913
ENSMUSG00000037470.15_9	chr1	-	5552	41	FSM	ENSMUSG00000037470.15	ENSMUST00000046875.14	9033	41	19	3462	19	-3	multi-exon	FALSE	canonical	3	131	junction_21	76.4630261956719	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAATGTGTGCTTTTTC	NA	False	NA	-8	True	NA	NA	NA	36283367	36182569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215313_36215409_36215856_36215881_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250470_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
ENSMUSG00000037474.14_12	chr1	-	2324	2	ISM	ENSMUSG00000037474.14	ENSMUST00000195650.6	4230	16	34452	28	34442	-19	3prime_fragment	FALSE	canonical	3	469	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAAAATAAGTGTGGC	7647	False	NA	-25	True	NA	NA	NA	191273181	191269495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_191271454_191272815
ENSMUSG00000037474.14_3	chr1	-	4059	15	FSM	ENSMUSG00000037474.14	ENSMUST00000027933.11	4212	15	25	128	2	-128	multi-exon	FALSE	canonical	3	463	junction_7	26.7651349516417	1102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTTAAGATGGCTTGG	NA	False	NA	-8	True	AATAAA	-22	NA	191307631	191269604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
ENSMUSG00000037474.14_7	chr1	-	4060	15	NIC	ENSMUSG00000037474.14	novel	4212	15	NA	NA	-6	-128	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	124.936249049388	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTTAAGATGGCTTGG	NA	False	NA	-8	True	AATAAA	-22	NA	191307639	191269604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300517_191300606_191300669_191301778_191301878_191302690_191302817_191307460
ENSMUSG00000037475.16_1	chrX	-	7603	39	FSM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	7	12	7	-12	multi-exon	FALSE	canonical	2	149	junction_20	23.0069843664894	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTATATCATTGTGT	NA	False	NA	-11	True	AATAAA	-14	NA	41000771	40883879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_40886657_40891823_40891870_40892332_40892410_40895278_40895440_40895521_40895592_40895910_40896049_40901335_40901372_40902826_40902886_40903074_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
ENSMUSG00000037475.16_11	chrX	-	2360	1	ISM	ENSMUSG00000037475.16	ENSMUST00000124458.8	3506	9	16884	12	9200	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTATATCATTGTGT	NA	False	NA	-11	True	AATAAA	-14	NA	40886239	40883879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_40883900_40886200
ENSMUSG00000037475.16_3	chrX	-	7685	39	NIC	ENSMUSG00000037475.16	novel	7622	39	NA	NA	6	-12	combination_of_known_junctions	FALSE	canonical	2	42	junction_7	32.9462859247091	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTATATCATTGTGT	NA	False	NA	-11	True	AATAAA	-14	NA	41000772	40883879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_40886657_40891823_40891870_40892332_40892410_40895278_40895440_40895521_40895592_40895910_40896049_40901335_40901453_40902826_40902886_40903074_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
ENSMUSG00000037475.16_91	chrX	-	3164	21	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	5	37495	5	-9078	5prime_fragment	FALSE	canonical	3	149	junction_2	22.6773014267571	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCAGCTGTCTCCTGTTA	NA	False	NA	NA	False	NA	NA	NA	41000773	40921362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
ENSMUSG00000037486.19_1	chr12	+	4619	12	NNC	ENSMUSG00000037486.19	novel	8887	12	NA	NA	5	16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	23.8760573734961	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAATACAGAATGCAGGTC	NA	False	NA	30	True	AATAAA	-29	NA	3476905	3552482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_3477213_3492473_3492562_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224_3546937_3549978
ENSMUSG00000037486.19_27	chr12	+	4060	9	NIC	ENSMUSG00000037486.19	novel	8887	12	NA	NA	14614	19	combination_of_known_junctions	FALSE	canonical	3	44	junction_8	13.1190462686889	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACAGAATGCAGGTCTTC	NA	False	NA	33	True	AATAAA	-32	NA	3507119	3552485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224_3546937_3549978
ENSMUSG00000037486.19_3	chr12	+	2241	11	NNC	ENSMUSG00000037486.19	novel	1483	12	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	23.8989539520038	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTGCTTTCCTATATTT	NA	False	NA	NA	False	AATAAA	-21	NA	3476904	3547061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_3477213_3492473_3492562_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224
ENSMUSG00000037486.19_35	chr12	+	2895	2	ISM	ENSMUSG00000037486.19	ENSMUST00000152196.2	5561	3	2771	2280	2771	2	3prime_fragment	FALSE	canonical	3	44	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGACATTAATCAGGAAT	NA	False	NA	16	True	AATAAA	-15	NA	3546531	3552468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_3546937_3549978
ENSMUSG00000037486.19_36	chr12	+	4563	1	ISM	ENSMUSG00000037486.19	ENSMUST00000111215.10	8887	12	75416	12	8512	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGTGAAATTAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	3552272	3556835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_3552300_3556800
ENSMUSG00000037487.8_14	chr15	-	2458	15	ISM	ENSMUSG00000037487.8	ENSMUST00000226414.2	8397	59	90077	-425	3289	-9	3prime_fragment	FALSE	canonical	3	678	junction_11	99.3772445517276	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTTTAGCTTTTTTATG	NA	False	NA	-14	True	AATAAA	-22	NA	37988592	37968111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265_37978327_37980033_37980165_37981063_37981209_37981709_37981822_37984190_37984435_37986121_37986221_37986322_37986444_37988447
ENSMUSG00000037487.8_2	chr15	-	4065	24	ISM	ENSMUSG00000037487.8	ENSMUST00000226414.2	8397	59	78454	-414	156	15	3prime_fragment	FALSE	canonical	0	0	junction_21	195.04684135192	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGTGTTTTCATTTTA	9457	False	NA	-25	True	AATAAA	-11	NA	38000215	37968122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265_37978327_37980033_37980165_37981063_37981209_37981709_37981822_37984190_37984435_37986121_37986221_37986322_37986444_37988447_37988669_37989526_37989641_37989723_37989897_37991540_37991615_37992195_37992427_37996798_37997011_37997167_37997437_37997964_37998223_37998530_37998663_38000136
ENSMUSG00000037487.8_43	chr15	-	3176	20	ISM	ENSMUSG00000037487.8	ENSMUST00000226414.2	8397	59	81810	-414	3512	15	3prime_fragment	FALSE	canonical	3	678	junction_11	97.9459402028286	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGTGTTTTCATTTTA	7833	False	NA	-25	True	AATAAA	-11	NA	37996859	37968122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265_37978327_37980033_37980165_37981063_37981209_37981709_37981822_37984190_37984435_37986121_37986221_37986322_37986444_37988447_37988669_37989526_37989641_37989723_37989897_37991540_37991615_37992195_37992427_37996798
ENSMUSG00000037487.8_45	chr15	-	4347	26	ISM	ENSMUSG00000037487.8	ENSMUST00000226414.2	8397	59	76086	-416	-1044	17	3prime_fragment	FALSE	canonical	0	0	junction_21	188.01623759665	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGTTTTCATTTTAGC	7089	False	NA	-23	True	AATAAA	-13	NA	38002583	37968120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265_37978327_37980033_37980165_37981063_37981209_37981709_37981822_37984190_37984435_37986121_37986221_37986322_37986444_37988447_37988669_37989526_37989641_37989723_37989897_37991540_37991615_37992195_37992427_37996798_37997011_37997167_37997437_37997964_37998223_37998530_37998663_38000136_38000249_38000813_38000938_38002460
ENSMUSG00000037487.8_5	chr15	-	9216	59	FSM	ENSMUSG00000037487.8	ENSMUST00000226414.2	8397	59	-402	-417	27	-17	multi-exon	TRUE	canonical	0	0	junction_21	178.88035064093	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTTTTCATTTTAGCT	NA	False	NA	-22	True	AATAAA	-14	NA	38079071	37968119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265_37978327_37980033_37980165_37981063_37981209_37981709_37981822_37984190_37984435_37986121_37986221_37986322_37986444_37988447_37988669_37989526_37989641_37989723_37989897_37991540_37991615_37992195_37992427_37996798_37997011_37997167_37997437_37997964_37998223_37998530_37998663_38000136_38000249_38000813_38000938_38002460_38002701_38002800_38002962_38004067_38004198_38004289_38004417_38004492_38004612_38004785_38004933_38006111_38006204_38006698_38006848_38008193_38008292_38008903_38009028_38009362_38009459_38009869_38010022_38013685_38013813_38015181_38015393_38018522_38018721_38019131_38019287_38019477_38019590_38019673_38019818_38021806_38021920_38022608_38022719_38024990_38025176_38028876_38028995_38029742_38029898_38030865_38030977_38031065_38031183_38038059_38038272_38040996_38041147_38041691_38041852_38042018_38042209_38045936_38046057_38047278_38047356_38047786_38047869_38048348_38048394_38078607
ENSMUSG00000037487.8_7	chr15	-	9198	59	FSM	ENSMUSG00000037487.8	ENSMUST00000110336.4	9242	59	27	17	27	-17	multi-exon	FALSE	canonical	0	0	junction_21	176.45579964147	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTTTTCATTTTAGCT	NA	False	NA	-22	True	AATAAA	-14	NA	38079071	37968119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265_37978327_37980033_37980165_37981063_37981209_37981709_37981822_37984190_37984435_37986121_37986221_37986322_37986444_37988447_37988669_37989526_37989641_37989723_37989897_37991540_37991615_37992195_37992427_37996798_37997011_37997167_37997437_37997964_37998223_37998530_37998663_38000136_38000249_38000813_38000938_38002460_38002701_38002800_38002962_38004067_38004198_38004289_38004417_38004492_38004612_38004785_38004933_38006111_38006204_38006698_38006848_38008193_38008292_38008903_38009028_38009362_38009459_38009869_38010022_38013685_38013813_38015181_38015393_38018522_38018721_38019131_38019287_38019477_38019590_38019673_38019818_38021806_38021920_38022608_38022719_38024990_38025176_38028876_38028995_38029742_38029898_38030865_38030977_38031065_38031183_38038059_38038254_38040996_38041147_38041691_38041852_38042018_38042209_38045936_38046057_38047278_38047356_38047786_38047869_38048348_38048394_38078607
ENSMUSG00000037490.6_0	chr10	+	3749	5	FSM	ENSMUSG00000037490.6	ENSMUST00000042261.5	4167	5	0	418	0	-418	multi-exon	FALSE	canonical	1	2	junction_1	0.82915619758885	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAAACTTGGATGTATA	NA	False	NA	NA	False	AATAAA	-11	NA	22520909	22579766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_22521213_22540261_22541606_22568033_22568157_22569892_22570026_22577920
ENSMUSG00000037492.17_1	chr8	+	1622	2	NNC	ENSMUSG00000037492.17	novel	4182	7	NA	NA	115450	-1821	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCATAGTCTGAGGTTTTG	NA	False	NA	NA	False	AATAAA	-29	NA	24534518	24551300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_24534602_24549761
ENSMUSG00000037493.7_0	chr9	-	468	1	ISM	ENSMUSG00000037493.7	ENSMUST00000041901.7	1433	6	14956	1	14956	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCACTCTCCGTGTCTGTC	NA	False	NA	NA	False	AATAAA	-19	NA	54452546	54452078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_54452100_54452500
ENSMUSG00000037499.10_0	chr1	-	652	4	FSM	ENSMUSG00000037499.10	ENSMUST00000046770.10	742	4	89	1	89	-1	multi-exon	FALSE	canonical	3	115	junction_1	10.5303793326209	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTCTGTGTATGGTTCTT	NA	False	NA	-1	True	AATAAA	-18	NA	191050302	191038986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191039287_191042115_191042220_191043656_191043718_191050115
ENSMUSG00000037503.13_10	chr1	-	4997	7	FSM	ENSMUSG00000037503.13	ENSMUST00000170092.8	941	7	-48	-4008	1	-1	multi-exon	FALSE	canonical	3	35	junction_3	164.703521516694	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCTGACCTTTTCGTGG	NA	False	NA	-8	True	AATAAA	-17	NA	34882093	34852307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_34856486_34857077_34857208_34858672_34858872_34858947_34859091_34867847_34867929_34875813_34875895_34881908
ENSMUSG00000037503.13_2	chr1	-	4977	7	FSM	ENSMUSG00000037503.13	ENSMUST00000047534.12	5030	7	52	1	0	-1	multi-exon	FALSE	canonical	3	412	junction_3	28.4702573847789	804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCTGACCTTTTCGTGG	NA	False	NA	-8	True	AATAAA	-17	NA	34882094	34852307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_34856486_34857077_34857208_34858672_34858851_34858947_34859091_34867847_34867929_34875813_34875895_34881908
ENSMUSG00000037503.13_3	chr1	-	2592	1	ISM	ENSMUSG00000037503.13	ENSMUST00000167518.8	5058	8	27232	8	27146	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCTGACCTTTTCGTGG	NA	False	NA	-8	True	AATAAA	-17	NA	34854899	34852307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_34852300_34854900
ENSMUSG00000037503.13_4	chr1	-	4929	7	FSM	ENSMUSG00000037503.13	ENSMUST00000185469.7	778	7	-26	-4125	2	-1	multi-exon	TRUE	canonical	3	22	junction_4	165.108802511152	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCTGACCTTTTCGTGG	NA	False	NA	-8	True	AATAAA	-17	NA	34882092	34852307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_34856486_34857077_34857208_34858672_34858851_34858947_34859045_34867847_34867929_34875813_34875895_34881908
ENSMUSG00000037509.22_0	chr1	+	2657	10	FSM	ENSMUSG00000037509.22	ENSMUST00000047664.16	3287	10	59	571	22	-1	multi-exon	FALSE	canonical	3	11	junction_6	6.35959467611297	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGGCTGCTGGTCAGCTG	NA	False	NA	9	True	CATAAA	-18	NA	34840843	34851819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_34841083_34843994_34844175_34845036_34845217_34845395_34845576_34846139_34846373_34846722_34846853_34848777_34848910_34849391_34849636_34850166_34850245_34850758
ENSMUSG00000037509.22_12	chr1	+	977	1	ISM	ENSMUSG00000037509.22	ENSMUST00000159747.9	6514	14	133574	1	10021	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGGCTGCTGGTCAGCTG	505	False	NA	9	True	CATAAA	-18	NA	34850842	34851819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_34850800_34851800
ENSMUSG00000037509.22_13	chr1	+	6538	14	FSM	ENSMUSG00000037509.22	ENSMUST00000159747.9	6514	14	-32	8	-32	-8	multi-exon	FALSE	canonical	0	0	junction_3	9.13281358748051	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTGACCTGGCTGCTGG	NA	False	NA	2	True	CATAAA	-11	NA	34717236	34851812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_34717344_34760784_34764241_34771189_34771490_34784398_34784526_34832306_34832444_34843994_34844175_34845036_34845217_34845395_34845576_34846139_34846373_34846722_34846853_34848777_34848910_34849391_34849636_34850166_34850245_34850758
ENSMUSG00000037509.22_16	chr1	+	2972	11	NIC	ENSMUSG00000037509.22	novel	1206	6	NA	NA	19	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	8.28009661779378	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTGACCTGGCTGCTGG	NA	False	NA	2	True	CATAAA	-11	NA	34789680	34851812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34790105_34832306_34832444_34843994_34844175_34845036_34845217_34845395_34845576_34846139_34846373_34846722_34846853_34848777_34848910_34849391_34849636_34850166_34850245_34850758
ENSMUSG00000037509.22_29	chr1	+	5492	5	NIC	ENSMUSG00000037509.22	novel	3287	10	NA	NA	22	244	intron_retention	FALSE	canonical	3	18	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCTCTGGCCAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	34840843	34851154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34841083_34843994_34844175_34845036_34849636_34850166_34850245_34850758
ENSMUSG00000037509.22_3	chr1	+	3242	4	FSM	ENSMUSG00000037509.22	ENSMUST00000159059.2	1024	4	-7	-2211	-6	-2	multi-exon	FALSE	canonical	3	18	junction_2	6.64997911442	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAAAGGCG	NA	False	NA	NA	False	NA	NA	NA	34840795	34847990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_34841083_34843994_34844175_34845036_34845217_34845395
ENSMUSG00000037509.22_7	chr1	+	3652	8	NIC	ENSMUSG00000037509.22	novel	3287	10	NA	NA	-33	-12	intron_retention	FALSE	canonical	3	11	junction_4	6.73704349860091	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAAAGTGACCTGGCTG	NA	False	NA	-2	True	CATAAA	-7	NA	34840751	34851808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34841083_34843994_34844175_34845036_34845217_34845395_34846853_34848777_34848910_34849391_34849636_34850166_34850245_34850758
ENSMUSG00000037509.22_8	chr1	+	3816	1	NIC	ENSMUSG00000037509.22	novel	6514	14	NA	NA	3354	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAAGGCGT	NA	False	NA	NA	False	NA	NA	NA	34844175	34847991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_34844200_34848000
ENSMUSG00000037514.19_0	chr2	+	1773	7	FSM	ENSMUSG00000037514.19	ENSMUST00000150843.9	4266	7	-4	2497	1	0	multi-exon	FALSE	canonical	3	323	junction_2	97.0093065409477	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTGGAGGTCATCTTT	865	False	NA	13	True	NA	NA	NA	131104415	131138611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131104736_131115830_131116184_131122076_131122331_131124511_131124689_131129393_131129518_131135318_131135445_131138192
ENSMUSG00000037514.19_12	chr2	+	3831	5	NIC	ENSMUSG00000037514.19	novel	4266	7	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	56	junction_2	217.555165417877	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTATGAGTGTTTGCT	865	False	NA	-3	True	AATAAA	-11	NA	131104415	131141100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_131104736_131115830_131116184_131129393_131129518_131135318_131135445_131138192
ENSMUSG00000037514.19_17	chr2	+	2123	4	FSM	ENSMUSG00000037514.19	ENSMUST00000145904.2	558	4	-300	-1265	1	905	multi-exon	FALSE	canonical	3	31	junction_2	262.90725022757	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAAAGGGTTTGTTTCAG	865	False	NA	NA	False	NA	NA	NA	131104415	131139516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131104736_131115830_131116184_131135318_131135445_131138192
ENSMUSG00000037514.19_3	chr2	+	2517	7	FSM	ENSMUSG00000037514.19	ENSMUST00000184105.9	1398	7	-9	-1110	-9	907	multi-exon	FALSE	canonical	0	0	junction_2	197.100651106653	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGGGTTTGTTTCAGAG	885	False	NA	NA	False	CATAAA	-2	NA	131104435	131139518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131104736_131115830_131116041_131122076_131122331_131124511_131124689_131129393_131129518_131135318_131135445_131138192
ENSMUSG00000037514.19_37	chr2	+	1671	1	ISM	ENSMUSG00000037514.19	ENSMUST00000150843.9	4266	7	35016	2	23331	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGTGTTTGCTTGCATG	NA	False	NA	3	True	AATAAA	-17	NA	131139435	131141106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_131139400_131141100
ENSMUSG00000037514.19_4	chr2	+	1199	5	FSM	ENSMUSG00000037514.19	ENSMUST00000184932.9	3622	5	-72	2495	1	0	multi-exon	FALSE	canonical	0	0	junction_2	240.508315864546	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTGGAGGTCATCTTT	865	False	NA	13	True	NA	NA	NA	131104415	131138611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131104736_131115830_131116041_131129393_131129518_131135318_131135445_131138192
ENSMUSG00000037519.18_1	chr7	-	5040	28	NIC	ENSMUSG00000037519.18	novel	5181	31	NA	NA	14	1	combination_of_known_junctions	FALSE	canonical	2	132	junction_22	23.3465570993897	332	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCCAGTTAAGAGTGCTG	NA	False	NA	-9	True	AATAAA	-17	NA	144107452	144030501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_144031727_144032763_144032835_144034821_144034988_144035447_144035517_144035996_144036173_144038580_144038679_144038769_144038946_144045188_144045390_144045478_144045561_144052033_144052128_144052443_144052617_144053988_144054141_144058639_144058872_144059807_144060032_144061865_144062002_144064018_144064099_144064610_144064674_144066982_144067115_144068177_144068262_144069722_144069858_144071336_144071484_144072885_144073105_144073281_144073384_144073712_144073788_144074361_144074527_144074696_144074799_144106006_144106271_144107255
ENSMUSG00000037519.18_11	chr7	-	4972	27	NIC	ENSMUSG00000037519.18	novel	5181	31	NA	NA	16	-1	combination_of_known_junctions	TRUE	canonical	2	6	junction_1	44.9229616700313	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTAAGAGTGCTGTGAAC	NA	False	NA	-4	True	AATAAA	-22	NA	144107450	144030496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_144031727_144034821_144034988_144035447_144035517_144035996_144036173_144038580_144038679_144038769_144038946_144045188_144045390_144045478_144045561_144052033_144052128_144052443_144052617_144053988_144054141_144058639_144058872_144059807_144060032_144061865_144062002_144064018_144064099_144064610_144064674_144066982_144067115_144068177_144068262_144069722_144069858_144071336_144071484_144072885_144073105_144073281_144073384_144073712_144073788_144074361_144074527_144074696_144074799_144106006_144106271_144107255
ENSMUSG00000037519.18_21	chr7	-	5036	28	NIC	ENSMUSG00000037519.18	novel	5181	31	NA	NA	26	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	46.4953941108727	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTTAAGAGTGCTGTGAA	NA	False	NA	-5	True	AATAAA	-21	NA	144107440	144030497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_144031727_144032763_144032835_144034821_144034988_144035447_144035517_144035996_144036173_144038580_144038679_144038765_144038946_144045188_144045390_144045478_144045561_144052033_144052128_144052443_144052617_144053988_144054141_144058639_144058872_144059807_144060032_144061865_144062002_144064018_144064099_144064610_144064674_144066982_144067115_144068177_144068262_144069722_144069858_144071336_144071484_144072885_144073105_144073281_144073384_144073712_144073788_144074361_144074527_144074696_144074799_144106006_144106271_144107255
ENSMUSG00000037519.18_8	chr7	-	4718	28	NIC	ENSMUSG00000037519.18	novel	5181	31	NA	NA	11	-115	combination_of_known_splicesites	FALSE	canonical	2	12	junction_7	44.5041265946274	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTGTCTTACATTTAT	NA	False	NA	NA	False	AATAAA	-18	NA	144107455	144030829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_144031727_144032763_144032835_144034821_144034988_144035447_144035517_144035996_144036173_144038580_144038679_144038769_144038949_144045188_144045390_144045478_144045561_144052033_144052128_144052443_144052617_144053988_144054141_144058639_144058872_144059807_144060032_144061865_144062002_144064018_144064099_144064610_144064674_144066982_144067115_144068177_144068262_144069722_144069858_144071336_144071484_144072885_144073105_144073281_144073384_144073712_144073788_144074361_144074527_144074696_144074799_144106006_144106271_144107255
ENSMUSG00000037523.14_2	chr2	+	2864	7	FSM	ENSMUSG00000037523.14	ENSMUST00000041362.12	2867	7	0	3	0	0	multi-exon	FALSE	canonical	3	174	junction_4	7.24377127070024	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTGTGAGTTCCAAAT	7264	False	NA	11	True	ATTAAA	-16	NA	131075986	131089942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131076048_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
ENSMUSG00000037523.14_20	chr2	+	3050	7	FSM	ENSMUSG00000037523.14	ENSMUST00000110199.3	3057	7	4	3	4	0	multi-exon	FALSE	canonical	3	32	junction_1	57.107111835762	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTGTGAGTTCCAAAT	7306	False	NA	11	True	ATTAAA	-16	NA	131076028	131089942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131076276_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
ENSMUSG00000037523.14_29	chr2	+	1318	1	ISM	ENSMUSG00000037523.14	ENSMUST00000130597.8	2959	8	12642	0	4771	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTGTGAGTTCCAAAT	2227	False	NA	11	True	ATTAAA	-16	NA	131088624	131089942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_131088600_131089900
ENSMUSG00000037525.6_0	chr15	-	1229	2	FSM	ENSMUSG00000037525.6	ENSMUST00000040313.6	1276	2	26	21	4	-19	multi-exon	FALSE	canonical	3	84	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAACGAAAA	NA	False	NA	-21	True	NA	NA	NA	99372585	99367980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99368961_99372336
ENSMUSG00000037525.6_2	chr15	-	4470	1	FSM	ENSMUSG00000037525.6	ENSMUST00000229827.2	4628	1	139	19	139	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAACGAAAA	NA	False	NA	-21	True	NA	NA	NA	99372450	99367980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99368000_99372400
ENSMUSG00000037526.8_0	chr14	-	3425	10	FSM	ENSMUSG00000037526.8	ENSMUST00000042988.7	3450	10	22	3	-8	-3	multi-exon	FALSE	canonical	3	110	junction_3	17.6572301841987	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTACTTGGCTGTGTGTGTC	NA	False	NA	-8	True	AATAAA	-10	NA	47805869	47778353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642
ENSMUSG00000037526.8_6	chr14	-	4011	13	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-6164	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	53.9554214143491	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGTACTTGGCTGTGTGT	NA	False	NA	-11	True	AATAAA	-7	NA	47814270	47778356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642_47806089_47812373_47812595_47813988_47814069_47814201
ENSMUSG00000037526.8_7	chr14	-	1634	1	ISM	ENSMUSG00000037526.8	ENSMUST00000226299.2	3729	11	28120	3	18110	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTTGGCTGTGTGTGTCT	NA	False	NA	-7	True	AATAAA	-11	NA	47779986	47778352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_47778400_47780000
ENSMUSG00000037531.9_0	chr3	-	869	7	FSM	ENSMUSG00000037531.9	ENSMUST00000043966.8	3364	7	392	2103	392	75	multi-exon	FALSE	canonical	3	685	junction_5	35.1931180141168	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATCAGTTGTTCTTCTA	NA	False	NA	-14	True	TATAAA	-18	NA	32790904	32781648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_32781867_32782580_32782677_32784229_32784361_32785308_32785406_32787737_32787799_32788256_32788409_32790790
ENSMUSG00000037533.21_0	chr11	+	1826	13	FSM	ENSMUSG00000037533.21	ENSMUST00000108895.8	1829	13	1	2	1	-2	multi-exon	FALSE	canonical	3	58	junction_8	14.7082743152735	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTTATGCTCATTATT	NA	False	NA	NA	False	AATAAA	-13	NA	54413716	54525833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585
ENSMUSG00000037533.21_1	chr11	+	8140	28	FSM	ENSMUSG00000037533.21	ENSMUST00000102743.10	8189	28	44	5	1	-5	multi-exon	FALSE	canonical	3	58	junction_8	12.2166092610894	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAACTGTGTGTGCTTCCT	NA	False	NA	8	True	AATAAA	-9	NA	54413716	54590106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585_54525694_54526837_54527042_54530575_54530685_54533536_54533778_54540007_54540166_54548071_54548313_54551628_54552013_54554828_54555041_54559439_54559564_54567020_54567242_54570064_54570254_54574717_54574853_54581002_54581232_54582063_54582567_54585095_54585399_54586905
ENSMUSG00000037533.21_2	chr11	+	7838	27	NIC	ENSMUSG00000037533.21	novel	8189	28	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	5	junction_26	19.1977023403304	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACTGTGTGTGCTTCCTT	NA	False	NA	9	True	AATAAA	-10	NA	54413716	54590107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585_54525694_54526837_54527042_54530575_54530685_54533536_54533778_54540007_54540166_54548071_54548313_54551628_54552013_54554828_54555041_54559439_54559564_54567020_54567242_54570064_54570254_54574717_54574853_54581002_54581232_54582063_54582567_54586905
ENSMUSG00000037533.21_25	chr11	+	6003	13	ISM	ENSMUSG00000037533.21	ENSMUST00000239168.2	7131	18	16510	5	16510	-5	3prime_fragment	FALSE	canonical	3	64	junction_12	7.29154761807579	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAACTGTGTGTGCTTCCT	NA	False	NA	8	True	AATAAA	-9	NA	54533674	54590106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_54533778_54540007_54540166_54548071_54548313_54551628_54552013_54554828_54555041_54559439_54559564_54567020_54567242_54570064_54570254_54574717_54574853_54581002_54581232_54582063_54582567_54585095_54585399_54586905
ENSMUSG00000037533.21_28	chr11	+	5328	10	ISM	ENSMUSG00000037533.21	ENSMUST00000239168.2	7131	18	34637	5	-30456	-5	3prime_fragment	FALSE	canonical	3	64	junction_9	6.83310749400969	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAACTGTGTGTGCTTCCT	NA	False	NA	8	True	AATAAA	-9	NA	54551801	54590106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_54552013_54554828_54555041_54559439_54559564_54567020_54567242_54570064_54570254_54574717_54574853_54581002_54581232_54582063_54582567_54585095_54585399_54586905
ENSMUSG00000037533.21_34	chr11	+	3672	3	ISM	ENSMUSG00000037533.21	ENSMUST00000239168.2	7131	18	65235	4	142	-4	3prime_fragment	FALSE	canonical	3	64	junction_2	9.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACTGTGTGTGCTTCCTT	NA	False	NA	9	True	AATAAA	-10	NA	54582399	54590107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_54582567_54585095_54585399_54586905
ENSMUSG00000037533.21_36	chr11	+	2545	1	ISM	ENSMUSG00000037533.21	ENSMUST00000102743.10	8189	28	173889	5	5304	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAACTGTGTGTGCTTCCT	NA	False	NA	8	True	AATAAA	-9	NA	54587561	54590106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_54587600_54590100
ENSMUSG00000037536.15_1	chr14	+	3032	3	FSM	ENSMUSG00000037536.15	ENSMUST00000168833.9	2993	3	-42	3	1	0	multi-exon	FALSE	canonical	3	71	junction_1	10.5	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGGTCTGGTCTTAAA	NA	False	NA	7	True	AATAAA	-15	NA	47710033	47769412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_47710175_47763661_47763772_47766631
ENSMUSG00000037536.15_10	chr14	+	3265	5	NIC	ENSMUSG00000037536.15	novel	3418	7	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_3	35.4436171968946	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGGTCTGGTCTTAAA	NA	False	NA	7	True	AATAAA	-15	NA	47710024	47769412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47710175_47738250_47738328_47742442_47742590_47763661_47763772_47766631
ENSMUSG00000037536.15_11	chr14	+	2988	3	FSM	ENSMUSG00000037536.15	ENSMUST00000227162.2	373	3	-2	-2613	-2	0	multi-exon	FALSE	canonical	3	11	junction_2	19	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGAGGTCTGGTCTTAA	NA	False	NA	6	True	AATAAA	-14	NA	47710043	47769411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_47710175_47738250_47738328_47766631
ENSMUSG00000037536.15_13	chr14	+	3437	6	NIC	ENSMUSG00000037536.15	novel	3418	7	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_3	33.4269352468933	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGGTCTGGTCTTAAA	NA	False	NA	7	True	AATAAA	-15	NA	47710034	47769412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47710175_47738250_47738328_47742442_47742590_47744721_47744904_47763661_47763772_47766631
ENSMUSG00000037536.15_19	chr14	+	1927	1	ISM	ENSMUSG00000037536.15	ENSMUST00000163324.8	3132	4	57468	7	3950	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGGTCTGGTCTTAAA	NA	False	NA	7	True	AATAAA	-15	NA	47767485	47769412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_47767500_47769400
ENSMUSG00000037536.15_6	chr14	+	3108	4	FSM	ENSMUSG00000037536.15	ENSMUST00000163324.8	3132	4	17	7	2	0	multi-exon	FALSE	canonical	3	23	junction_2	28.4526897771644	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGGTCTGGTCTTAAA	NA	False	NA	7	True	AATAAA	-15	NA	47710034	47769412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_47710175_47738250_47738328_47763661_47763772_47766631
ENSMUSG00000037536.15_8	chr14	+	2921	2	FSM	ENSMUSG00000037536.15	ENSMUST00000043112.9	2937	2	17	-1	2	0	multi-exon	FALSE	canonical	3	19	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGGTCTGGTCTTAAA	NA	False	NA	7	True	AATAAA	-15	NA	47710034	47769412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_47710175_47766631
ENSMUSG00000037544.15_13	chr14	-	2737	19	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-2	-16	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	120.677715884546	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	47655666	47625260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_47625577_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ENSMUSG00000037544.15_2	chr14	-	2735	19	FSM	ENSMUSG00000037544.15	ENSMUST00000043296.10	2964	19	200	29	0	-20	multi-exon	FALSE	canonical	3	355	junction_12	54.7968470301389	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	47655664	47625264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ENSMUSG00000037544.15_21	chr14	-	2981	17	FSM	ENSMUSG00000037544.15	ENSMUST00000180299.8	4067	17	-30	1116	0	4	multi-exon	FALSE	canonical	3	355	junction_10	53.3282508971558	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCATTTAATGTCTTTTGT	NA	False	NA	NA	False	AATGAA	-17	NA	47655664	47627290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ENSMUSG00000037544.15_4	chr14	-	2679	18	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	2	-16	combination_of_known_junctions	FALSE	canonical	3	105	junction_1	102.855729242771	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	47655655	47625260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_47625577_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ENSMUSG00000037544.15_7	chr14	-	2688	19	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	0	-31	combination_of_known_junctions	FALSE	canonical	3	64	junction_10	111.61232785134	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	47655664	47625275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643323_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ENSMUSG00000037552.18_0	chr7	-	4572	20	NIC	ENSMUSG00000037552.18	novel	5511	19	NA	NA	64	1	combination_of_known_junctions	TRUE	canonical	1	3	junction_17	6.95454175122481	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTGCCTTTCTTGAG	NA	False	NA	0	True	NA	NA	NA	28071441	28059027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069923_28070302_28070468_28070539_28070671_28071284
ENSMUSG00000037552.18_1	chr7	-	1288	1	ISM	ENSMUSG00000037552.18	ENSMUST00000094644.11	4623	19	11341	1	2449	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGCCTTTCTTG	NA	False	NA	-2	True	NA	NA	NA	28060317	28059029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_28059000_28060300
ENSMUSG00000037552.18_11	chr7	-	5185	18	NIC	ENSMUSG00000037552.18	novel	4623	19	NA	NA	-58	0	intron_retention	FALSE	canonical	2	5	junction_16	6.16890292692301	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTTTTGCCTTTCTTGA	NA	False	NA	-1	True	NA	NA	NA	28072082	28059028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069923_28070539_28070671_28071284
ENSMUSG00000037552.18_12	chr7	-	5210	20	NIC	ENSMUSG00000037552.18	novel	5511	19	NA	NA	-60	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_17	7.20572256426309	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGCCTTTCTTG	NA	False	NA	-2	True	NA	NA	NA	28072084	28059029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069920_28070302_28070468_28070539_28070671_28071284
ENSMUSG00000037552.18_13	chr7	-	5423	20	NIC	ENSMUSG00000037552.18	novel	5511	19	NA	NA	-50	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_19	8.31911991935968	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGCCTTTCTTG	NA	False	NA	-2	True	NA	NA	NA	28072074	28059029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069920_28070302_28070468_28070539_28070671_28071061
ENSMUSG00000037552.18_14	chr7	-	5202	19	NIC	ENSMUSG00000037552.18	novel	4623	19	NA	NA	8	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	7.48331477354788	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTTTTGCCTTTCTT	NA	False	NA	-3	True	NA	NA	NA	28072016	28059030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069923_28070539_28070671_28071061
ENSMUSG00000037552.18_16	chr7	-	4232	18	ISM	ENSMUSG00000037552.18	ENSMUST00000094644.11	4623	19	998	7	273	-6	3prime_fragment	FALSE	canonical	2	5	junction_17	6.0670988603545	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGCTGTGTGTTTTGCCT	NA	False	NA	-8	True	NA	NA	NA	28070660	28059035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069923_28070539
ENSMUSG00000037552.18_2	chr7	-	5037	19	FSM	ENSMUSG00000037552.18	ENSMUST00000094644.11	4623	19	-416	2	-50	-1	multi-exon	FALSE	canonical	2	5	junction_17	6.01156293229048	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTTTTGCCTTTCTT	NA	False	NA	-3	True	NA	NA	NA	28072074	28059030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069923_28070539_28070671_28071284
ENSMUSG00000037552.18_3	chr7	-	5041	19	FSM	ENSMUSG00000037552.18	ENSMUST00000119990.8	4880	19	-161	0	-56	0	multi-exon	FALSE	canonical	1	3	junction_17	6.29643246040129	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGCCTTTCTTG	NA	False	NA	-2	True	NA	NA	NA	28072080	28059029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069920_28070539_28070671_28071284
ENSMUSG00000037552.18_6	chr7	-	5301	19	NIC	ENSMUSG00000037552.18	novel	5511	19	NA	NA	-76	0	intron_retention	FALSE	canonical	1	3	junction_17	6.29643246040129	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGCCTTTCTTG	NA	False	NA	-2	True	NA	NA	NA	28072100	28059029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069923_28070302_28070671_28071284
ENSMUSG00000037552.18_8	chr7	-	5481	19	NIC	ENSMUSG00000037552.18	novel	4880	19	NA	NA	-36	0	intron_retention	FALSE	canonical	0	0	junction_18	7.94114150453584	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGCCTTTCTTG	NA	False	NA	-2	True	NA	NA	NA	28072060	28059029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069920_28070302_28070671_28071061
ENSMUSG00000037552.18_9	chr7	-	1996	2	ISM	ENSMUSG00000037552.18	ENSMUST00000129145.8	3074	3	1195	0	1195	0	3prime_fragment	FALSE	canonical	3	29	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGCCTTTCTTG	NA	False	NA	-2	True	NA	NA	NA	28061571	28059029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_28060687_28061232
ENSMUSG00000037553.15_5	chr4	-	2891	8	FSM	ENSMUSG00000037553.15	ENSMUST00000084238.5	4580	8	-7	1696	-7	1674	multi-exon	FALSE	canonical	3	285	junction_4	22.238961949053	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTGCTTTGCTTTAGTT	NA	False	NA	-17	True	AATAAA	-18	NA	133360787	133334305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133336085_133337680_133337794_133340233_133340337_133340949_133340999_133341111_133341250_133342490_133342641_133354510_133354672_133360389
ENSMUSG00000037553.15_6	chr4	-	1186	1	ISM	ENSMUSG00000037553.15	ENSMUST00000084238.5	4580	8	25289	1696	4854	1674	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTGCTTTGCTTTAGTT	3817	False	NA	-17	True	AATAAA	-18	NA	133335491	133334305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133334300_133335500
ENSMUSG00000037563.16_0	chr7	+	552	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	97	460	-14	-1	multi-exon	FALSE	canonical	3	19383	junction_3	806.134294023024	3351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTTTGTGTTGGTCT	NA	False	NA	-1	True	AATAAA	-20	NA	28050173	28052120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
ENSMUSG00000037568.13_1	chr1	-	3711	8	FSM	ENSMUSG00000037568.13	ENSMUST00000166139.7	3897	8	70	116	-12	-114	multi-exon	FALSE	canonical	0	0	junction_7	1.82946406783796	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGAAGGACTTCACGAT	NA	False	NA	NA	False	AATAAA	-11	NA	190711423	190679958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_190682454_190690810_190690927_190692294_190692677_190698399_190698475_190699125_190699183_190702600_190702690_190710377_190710785_190711333
ENSMUSG00000037570.17_0	chr15	-	1888	15	FSM	ENSMUSG00000037570.17	ENSMUST00000041190.17	1916	15	22	6	6	3	multi-exon	FALSE	canonical	3	647	junction_2	85.1129201923742	979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTAGCTTCTTTTATTTT	NA	False	NA	-5	True	AATAAA	-15	NA	99149820	99140703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
ENSMUSG00000037570.17_3	chr15	-	1768	14	FSM	ENSMUSG00000037570.17	ENSMUST00000163506.3	1771	14	6	-3	6	3	multi-exon	FALSE	canonical	3	113	junction_13	210.299476515005	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTAGCTTCTTTTATTTT	NA	False	NA	-5	True	AATAAA	-15	NA	99149820	99140703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99149742
ENSMUSG00000037572.18_1	chr14	-	4255	25	FSM	ENSMUSG00000037572.18	ENSMUST00000187531.8	4260	25	4	1	4	-1	multi-exon	FALSE	canonical	1	98	junction_11	68.6814304516795	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTGTCTTGCTATGGTT	NA	False	NA	-1	True	AATAAA	-19	NA	47514285	47478401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
ENSMUSG00000037572.18_4	chr14	-	4145	25	FSM	ENSMUSG00000037572.18	ENSMUST00000111792.9	4174	25	28	1	3	-1	multi-exon	FALSE	canonical	1	22	junction_16	87.7556582537876	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTGTCTTGCTATGGTT	NA	False	NA	-1	True	AATAAA	-19	NA	47514286	47478401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504520_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
ENSMUSG00000037573.6_1	chr11	+	2290	2	FSM	ENSMUSG00000037573.6	ENSMUST00000041589.6	2288	2	-13	11	-13	-11	multi-exon	FALSE	canonical	3	252	junction_1	0	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAAAAATGCCTATCC	NA	False	NA	NA	False	ATTAAA	-8	NA	94102266	94106310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_94102558_94104311
ENSMUSG00000037573.6_5	chr11	+	1674	1	ISM	ENSMUSG00000037573.6	ENSMUST00000041589.6	2288	2	2357	11	2357	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAAAAATGCCTATCC	NA	False	NA	NA	False	ATTAAA	-8	NA	94104636	94106310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94104600_94106300
ENSMUSG00000037577.14_0	chr17	-	1639	7	FSM	ENSMUSG00000037577.14	ENSMUST00000162117.3	1591	7	81	-129	-5	129	multi-exon	FALSE	canonical	3	11	junction_5	2.21108319357027	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAGACCGACAGCTGAGT	1075	False	NA	NA	False	AATACA	-15	NA	32408442	32403504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32404096_32404189_32404327_32404419_32404524_32407149_32407279_32407384_32407543_32407759_32407846_32408008
ENSMUSG00000037577.14_3	chr17	-	1885	5	ISM	ENSMUSG00000037577.14	ENSMUST00000162117.3	1591	7	86	0	0	0	intron_retention	FALSE	canonical	3	12	junction_3	1.80277563773199	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCGGTCTGATGTTTAA	1080	False	NA	NA	False	CATAAA	-26	NA	32408437	32403633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32404096_32404189_32404327_32404419_32404524_32407149_32407279_32407384
ENSMUSG00000037578.5_0	chr19	-	2329	11	ISM	ENSMUSG00000037578.5	ENSMUST00000042026.5	3321	15	36461	9	36461	-8	3prime_fragment	FALSE	canonical	3	31	junction_9	13.2003787824441	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCACGTCTTTGCAT	2020	False	NA	-10	True	AATAAA	-8	NA	44144420	44136084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142219_44142502_44142685_44142862_44143034_44143886_44144116_44144279
ENSMUSG00000037578.5_1	chr19	-	5526	7	NIC	ENSMUSG00000037578.5	novel	3529	14	NA	NA	35310	-3	intron_retention	FALSE	canonical	3	43	junction_6	11.9640665698954	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACGTCTTTGCATTTCCT	869	False	NA	-5	True	AATAAA	-13	NA	44145571	44136079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44140902_44142097_44144116_44144279_44144505_44145490
ENSMUSG00000037578.5_10	chr19	-	3661	10	NIC	ENSMUSG00000037578.5	novel	3321	15	NA	NA	35282	-6	intron_retention	FALSE	canonical	3	43	junction_4	11.0263433156047	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCACGTCTTTGCATTT	841	False	NA	-8	True	AATAAA	-10	NA	44145599	44136082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142685_44142862_44144116_44144279_44144505_44145490
ENSMUSG00000037578.5_11	chr19	-	2958	10	NIC	ENSMUSG00000037578.5	novel	3321	15	NA	NA	35310	-6	intron_retention	FALSE	canonical	3	31	junction_7	13.1242871646519	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCACGTCTTTGCATTT	869	False	NA	-8	True	AATAAA	-10	NA	44145571	44136082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44143034_44143886_44144116_44144279_44144505_44145490
ENSMUSG00000037578.5_12	chr19	-	1511	4	ISM	ENSMUSG00000037578.5	ENSMUST00000161357.2	3529	14	41666	8	41666	-8	3prime_fragment	FALSE	canonical	3	48	junction_3	2.05480466765633	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCACGTCTTTGCAT	7225	False	NA	-10	True	AATAAA	-8	NA	44139215	44136084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850
ENSMUSG00000037578.5_2	chr19	-	2492	12	ISM	ENSMUSG00000037578.5	ENSMUST00000042026.5	3321	15	35314	7	35314	-6	3prime_fragment	FALSE	canonical	3	31	junction_9	12.7694107632134	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCACGTCTTTGCATTT	873	False	NA	-8	True	AATAAA	-10	NA	44145567	44136082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142219_44142502_44142685_44142862_44143034_44143886_44144116_44144279_44144505_44145490
ENSMUSG00000037578.5_3	chr19	-	3809	9	NIC	ENSMUSG00000037578.5	novel	3321	15	NA	NA	35310	-8	intron_retention	FALSE	canonical	3	43	junction_4	11.6189500386223	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCACGTCTTTGCAT	869	False	NA	-10	True	AATAAA	-8	NA	44145571	44136084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44144116_44144279_44144505_44145490
ENSMUSG00000037578.5_4	chr19	-	2774	11	NIC	ENSMUSG00000037578.5	novel	3321	15	NA	NA	35314	-8	intron_retention	FALSE	canonical	3	31	junction_8	12.458330546265	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCACGTCTTTGCAT	873	False	NA	-10	True	AATAAA	-8	NA	44145567	44136084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142685_44142862_44143034_44143886_44144116_44144279_44144505_44145490
ENSMUSG00000037578.5_5	chr19	-	1686	7	ISM	ENSMUSG00000037578.5	ENSMUST00000042026.5	3321	15	38585	7	38585	-6	3prime_fragment	FALSE	canonical	3	43	junction_4	6.39661368746516	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCACGTCTTTGCATTT	4144	False	NA	-8	True	AATAAA	-10	NA	44142296	44136082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097
ENSMUSG00000037578.5_6	chr19	-	2183	10	ISM	ENSMUSG00000037578.5	ENSMUST00000042026.5	3321	15	36771	9	36771	-8	3prime_fragment	FALSE	canonical	3	31	junction_9	9.28293269964685	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCACGTCTTTGCAT	2330	False	NA	-10	True	AATAAA	-8	NA	44144110	44136084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142219_44142502_44142685_44142862_44143034_44143886
ENSMUSG00000037578.5_8	chr19	-	320	1	ISM	ENSMUSG00000037578.5	ENSMUST00000042026.5	3321	15	44479	7	44479	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCACGTCTTTGCATTT	NA	False	NA	-8	True	AATAAA	-10	NA	44136402	44136082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_44136100_44136400
ENSMUSG00000037579.8_1	chr15	+	3960	15	FSM	ENSMUSG00000037579.8	ENSMUST00000041415.5	3698	15	-282	20	-282	1	multi-exon	FALSE	canonical	3	10	junction_1	5.04520382468866	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATAAAAGAAGCT	NA	False	NA	-13	True	ATTAAA	-8	NA	99122459	99140678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99122933_99124188_99124423_99124861_99124997_99125789_99125924_99126353_99126598_99126939_99127098_99127186_99127395_99130573_99130886_99131129_99131330_99131747_99131998_99135955_99136174_99137475_99137808_99138767_99138875_99139630_99139708_99139800
ENSMUSG00000037579.8_15	chr15	+	3106	12	ISM	ENSMUSG00000037579.8	ENSMUST00000041415.5	3698	15	3070	10	112	-10	3prime_fragment	FALSE	canonical	3	23	junction_5	2.94859540731397	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAGCTACTTTGGAAC	NA	False	NA	-3	True	ATTAAA	-18	NA	99125811	99140688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_99125924_99126353_99126598_99126939_99127098_99127186_99127395_99130573_99130886_99131129_99131330_99131747_99131998_99135955_99136174_99137475_99137808_99138767_99138875_99139630_99139708_99139800
ENSMUSG00000037579.8_3	chr15	+	3601	15	NNC	ENSMUSG00000037579.8	novel	3225	2	NA	NA	-271	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	6.13787173112595	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATAAAAGAAGCT	NA	False	NA	-13	True	ATTAAA	-8	NA	99122470	99140678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_99122585_99124188_99124423_99124861_99124997_99125789_99125924_99126353_99126598_99126939_99127098_99127186_99127395_99130573_99130886_99131129_99131330_99131747_99131998_99135955_99136174_99137475_99137808_99138767_99138875_99139630_99139708_99139800
ENSMUSG00000037579.8_4	chr15	+	5685	12	NIC	ENSMUSG00000037579.8	novel	3698	15	NA	NA	-297	-9	intron_retention	FALSE	canonical	3	10	junction_1	5.67435873975536	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACATTAAAAAAAAAT	NA	False	NA	-23	True	NA	NA	NA	99122444	99140668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99122933_99124188_99124423_99124861_99124997_99125789_99125924_99126353_99127098_99127186_99127395_99130573_99130886_99131129_99131998_99135955_99136174_99137475_99138875_99139630_99139708_99139800
ENSMUSG00000037579.8_7	chr15	+	4901	14	NIC	ENSMUSG00000037579.8	novel	3698	15	NA	NA	-273	-9	intron_retention	FALSE	canonical	3	10	junction_1	5.22397749118451	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACATTAAAAAAAAAT	NA	False	NA	-23	True	NA	NA	NA	99122468	99140668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99122933_99124188_99124423_99124861_99124997_99125789_99125924_99126353_99126598_99126939_99127098_99127186_99127395_99130573_99130886_99131129_99131330_99131747_99131998_99135955_99136174_99137475_99138875_99139630_99139708_99139800
ENSMUSG00000037580.11_0	chr14	-	2766	6	FSM	ENSMUSG00000037580.11	ENSMUST00000089959.7	2775	6	2	7	2	-7	multi-exon	FALSE	canonical	3	47	junction_1	5.3665631459995	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGTTCTTGTGGATGT	NA	False	NA	NA	False	ATTAAA	-9	NA	47426868	47391358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_47393382_47394865_47394951_47396319_47396352_47403932_47403989_47406668_47406779_47426408
ENSMUSG00000037583.3_0	chr4	+	1175	2	FSM	ENSMUSG00000037583.3	ENSMUST00000042706.3	1132	2	-48	5	-48	-5	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGACACTGTAGTTGCTTG	NA	False	NA	NA	False	AATAAA	-12	NA	133280638	133283842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_133281277_133283305
ENSMUSG00000037594.12_0	chr12	+	1944	5	FSM	ENSMUSG00000037594.12	ENSMUST00000037014.11	1960	5	9	7	9	-7	multi-exon	FALSE	canonical	3	27	junction_2	3.74165738677394	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTGTGTGTTTTTGTTG	3910	False	NA	10	True	ATTAAA	-12	NA	112772565	112779865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112773429_112774493_112774631_112775802_112775933_112778082_112778200_112779168
ENSMUSG00000037594.12_2	chr12	+	2992	4	NIC	ENSMUSG00000037594.12	novel	1960	5	NA	NA	-14	-9	intron_retention	FALSE	canonical	3	27	junction_1	4.32049379893857	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGCCTGTGTGTTTTTGT	3925	False	NA	8	True	ATTAAA	-10	NA	112772580	112779863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_112774631_112775802_112775933_112778082_112778200_112779168
ENSMUSG00000037600.17_1	chr4	+	1890	4	NIC	ENSMUSG00000037600.17	novel	1708	4	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	23.3666428910958	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACACCTGCCTGGTCAT	5515	False	NA	4	True	NA	NA	NA	133246317	133258096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_133246364_133255050_133256321_133257141_133257217_133257597
ENSMUSG00000037600.17_11	chr4	+	1848	3	ISM	ENSMUSG00000037600.17	ENSMUST00000105901.2	1699	4	8683	-2	8655	0	3prime_fragment	FALSE	canonical	3	78	junction_1	1.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACCTGCCTGGTCATCA	3513	False	NA	6	True	NA	NA	NA	133255048	133258098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_133256321_133257141_133257217_133257597
ENSMUSG00000037600.17_2	chr4	+	2267	3	NIC	ENSMUSG00000037600.17	novel	1708	4	NA	NA	15	-4	intron_retention	FALSE	canonical	3	30	junction_1	24	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACATACACCTGCCTGG	5515	False	NA	0	True	NA	NA	NA	133246317	133258092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_133246364_133255050_133256321_133257141
ENSMUSG00000037600.17_4	chr4	+	1671	4	FSM	ENSMUSG00000037600.17	ENSMUST00000042919.16	1708	4	32	5	1	0	multi-exon	FALSE	canonical	2	6	junction_1	34.6698716467194	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACACCTGCCTGGTCAT	5532	False	NA	4	True	NA	NA	NA	133246334	133258096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_133246364_133255252_133256321_133257141_133257217_133257597
ENSMUSG00000037600.17_6	chr4	+	1690	4	FSM	ENSMUSG00000037600.17	ENSMUST00000105901.2	1699	4	9	0	9	0	multi-exon	FALSE	canonical	1	7	junction_1	34.198765409815	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACACCTGCCTGGTCAT	5572	False	NA	4	True	NA	NA	NA	133246374	133258096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_133246423_133255252_133256321_133257141_133257217_133257597
ENSMUSG00000037600.17_7	chr4	+	1891	4	NIC	ENSMUSG00000037600.17	novel	1699	4	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	21.9544984001001	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACACCTGCCTGGTCAT	5573	False	NA	4	True	NA	NA	NA	133246375	133258096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_133246423_133255050_133256321_133257141_133257217_133257597
ENSMUSG00000037601.12_0	chr11	-	677	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	250	2254	1	239	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	1046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTATTGCTGTACAGC	635	False	NA	-17	True	ATTAAA	-14	NA	93859097	93850058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
ENSMUSG00000037601.12_2	chr11	-	627	4	FSM	ENSMUSG00000037601.12	ENSMUST00000021220.10	493	4	105	-239	105	239	multi-exon	FALSE	canonical	3	3895	junction_1	547.489421511198	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTATTGCTGTACAGC	2968	False	NA	-17	True	ATTAAA	-14	NA	93856764	93850058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633
ENSMUSG00000037608.17_0	chr10	+	3211	13	FSM	ENSMUSG00000037608.17	ENSMUST00000185800.7	3142	13	-64	-5	1	2	multi-exon	FALSE	canonical	3	221	junction_3	210.967743716638	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGTAACTATCAACTTTT	2794	False	NA	14	True	AATAAA	-22	NA	20188218	20216014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
ENSMUSG00000037608.17_1	chr10	+	3230	13	FSM	ENSMUSG00000037608.17	ENSMUST00000043881.12	5437	13	-11	2218	1	15	multi-exon	FALSE	canonical	3	695	junction_11	110.864375352149	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTTTAAAAACATTTGAC	2794	False	NA	27	True	AATAAA	-35	NA	20188218	20216027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
ENSMUSG00000037608.17_3	chr10	+	3076	12	FSM	ENSMUSG00000037608.17	ENSMUST00000092678.10	5307	12	4	2227	1	8	multi-exon	FALSE	canonical	3	294	junction_10	195.138687701892	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTATCAACTTTTAAAAAC	2794	False	NA	20	True	AATAAA	-28	NA	20188218	20216020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
ENSMUSG00000037608.17_4	chr10	+	5284	12	NIC	ENSMUSG00000037608.17	novel	3164	13	NA	NA	1	-11	combination_of_known_junctions	FALSE	canonical	3	221	junction_3	266.237450718882	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAAGTGGTAATAGCTGG	2794	False	NA	3	True	AATAAA	-4	NA	20188218	20218234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
ENSMUSG00000037613.17_9	chr7	-	3184	6	FSM	ENSMUSG00000037613.17	ENSMUST00000152703.2	1476	6	62	-1770	61	-35	multi-exon	FALSE	canonical	0	0	junction_1	25.9799923017695	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAATATTCCAATAAAACTG	3169	False	NA	NA	False	NA	NA	NA	143239547	143219580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143222330_143223718_143223793_143224568_143224681_143233681_143233811_143235196_143235288_143239518
ENSMUSG00000037617.13_0	chr15	+	3459	19	NNC	ENSMUSG00000037617.13	novel	3646	19	NA	NA	-30	-1	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	18.4173998513349	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTACTGTGAGTATGCCT	152	False	NA	NA	False	AATAAA	-13	NA	36179483	36235755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_36179524_36181841_36181990_36183802_36183963_36186752_36186879_36190617_36190683_36191271_36191382_36192149_36192256_36195521_36195653_36197883_36197991_36200347_36200508_36210688_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
ENSMUSG00000037617.13_14	chr15	+	2036	8	ISM	ENSMUSG00000037617.13	ENSMUST00000227582.2	2388	9	638	-8	638	-3	3prime_fragment	FALSE	canonical	3	39	junction_3	6.74914960629584	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTATGCCTGCGTGTCTG	710	False	NA	NA	False	AATAAA	-22	NA	36211245	36235764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
ENSMUSG00000037617.13_3	chr15	+	3197	19	FSM	ENSMUSG00000037617.13	ENSMUST00000047348.11	3646	19	4	445	4	-1	multi-exon	FALSE	canonical	2	3	junction_1	18.7185950987016	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGTGGTGGCAGTTC	186	False	NA	NA	False	ATTAAA	-13	NA	36179517	36235322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_36179729_36181841_36181990_36183802_36183963_36186752_36186879_36190617_36190683_36191271_36191382_36192149_36192256_36195521_36195653_36197883_36197991_36200347_36200508_36210688_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
ENSMUSG00000037617.13_7	chr15	+	2361	9	FSM	ENSMUSG00000037617.13	ENSMUST00000227582.2	2388	9	24	3	24	-3	multi-exon	FALSE	canonical	3	39	junction_4	7	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTACTGTGAGTATGC	96	False	NA	NA	False	AATAAA	-11	NA	36210631	36235753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
ENSMUSG00000037617.13_9	chr15	+	6655	2	NIC	ENSMUSG00000037617.13	novel	2993	3	NA	NA	1750	-8	intron_retention	FALSE	canonical	3	55	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATACATTCTTTGTGGTG	2346	False	NA	NA	False	ATTAAA	-6	NA	36228563	36235315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_36234816_36234912
ENSMUSG00000037622.15_0	chr4	-	1420	1	ISM	ENSMUSG00000037622.15	ENSMUST00000043305.14	4191	16	45438	8	28344	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGACTGGTGGCATTT	NA	False	NA	-7	True	ATTAAA	-14	NA	133021197	133019777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133019800_133021200
ENSMUSG00000037622.15_1	chr4	-	3962	16	NIC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	-15	-8	combination_of_known_junctions	FALSE	canonical	3	428	junction_6	32.7350305059003	759	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGACTGGTGGCATTT	8975	False	NA	-7	True	ATTAAA	-14	NA	133080204	133019777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096
ENSMUSG00000037622.15_2	chr4	-	3959	16	NNC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	-15	-8	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_6	107.699375836425	131	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGACTGGTGGCATTT	8975	False	NA	-7	True	ATTAAA	-14	NA	133080204	133019777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029136_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096
ENSMUSG00000037622.15_4	chr4	-	4198	17	NIC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	12	-8	combination_of_known_junctions	FALSE	canonical	3	60	junction_16	112.020575676971	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGACTGGTGGCATTT	8399	False	NA	-7	True	ATTAAA	-14	NA	133080780	133019777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096_133080261_133080600
ENSMUSG00000037627.17_1	chr15	-	1627	8	ISM	ENSMUSG00000037627.17	ENSMUST00000172831.8	4006	28	-76	89958	-76	38784	5prime_fragment	FALSE	canonical	1	2	junction_3	1.45686271816937	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATACCAATAATGGTTAT	NA	False	NA	NA	False	AATAAA	-35	NA	36140622	36099582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_36100362_36101872_36102003_36103865_36104035_36104633_36104720_36107045_36107268_36122415_36122479_36140024_36140054_36140473
ENSMUSG00000037628.11_0	chr14	+	718	8	NIC	ENSMUSG00000037628.11	novel	917	8	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	194	junction_1	23.9395497204172	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTTCTCCAGCATAGT	NA	False	NA	3	True	AATAAA	-18	NA	46998051	47008978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007289_47007394_47008857
ENSMUSG00000037628.11_2	chr14	+	725	8	FSM	ENSMUSG00000037628.11	ENSMUST00000067426.6	917	8	44	148	-1	1	multi-exon	FALSE	canonical	3	28	junction_6	72.4563204099335	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTTCTCCAGCATAGT	NA	False	NA	3	True	AATAAA	-18	NA	46998041	47008978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007292_47007394_47008857
ENSMUSG00000037628.11_6	chr14	+	2560	7	NIC	ENSMUSG00000037628.11	novel	634	7	NA	NA	21	-15	intron_retention	FALSE	canonical	3	197	junction_5	22.8546129552293	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCACATCTAGGGTCTCCA	NA	False	NA	-13	True	AATAAA	-2	NA	46998072	47008962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007289_47007394_47008857
ENSMUSG00000037628.11_8	chr14	+	1091	7	FSM	ENSMUSG00000037628.11	ENSMUST00000226621.2	634	7	1	-458	1	309	multi-exon	FALSE	canonical	3	26	junction_1	78.2254576351089	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCGTATCTAACTTTAATG	NA	False	NA	NA	False	NA	NA	NA	46998052	47009435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_46998106_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007289_47007394_47008857
ENSMUSG00000037636.7_0	chrX	+	2425	5	FSM	ENSMUSG00000037636.7	ENSMUST00000047655.7	1111	5	38	-1352	-14	1352	multi-exon	FALSE	canonical	3	14	junction_3	2.69258240356725	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTATATAACTTTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	36007349	36042207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36007672_36015785_36016028_36021420_36021594_36039134_36039270_36040654
ENSMUSG00000037636.7_1	chrX	+	1982	3	ISM	ENSMUSG00000037636.7	ENSMUST00000047655.7	1111	5	-36	18091	-36	-17174	5prime_fragment	FALSE	canonical	3	15	junction_1	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAGTAATGTACATG	NA	False	NA	NA	False	TTTAAA	-36	NA	36007275	36022764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_36007672_36015785_36016028_36021420
ENSMUSG00000037638.6_0	chr12	+	3477	2	FSM	ENSMUSG00000037638.6	ENSMUST00000169593.2	3478	2	0	1	0	-1	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGATGGCTGTGATGATTCT	346	False	NA	NA	False	AATAAA	-15	NA	112645273	112649180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112645380_112645809
ENSMUSG00000037638.6_1	chr12	+	3265	2	FSM	ENSMUSG00000037638.6	ENSMUST00000173942.2	485	2	-4	-2776	-4	-1	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGATGGCTGTGATGATTCT	380	False	NA	NA	False	AATAAA	-15	NA	112645307	112649180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112645380_112645987
ENSMUSG00000037638.6_2	chr12	+	3001	1	NIC	ENSMUSG00000037638.6	novel	3160	3	NA	NA	868	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGATGGCTGTGATGATTCT	1252	False	NA	NA	False	AATAAA	-15	NA	112646179	112649180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_112646200_112649200
ENSMUSG00000037640.16_1	chr7	+	3777	6	NNC	ENSMUSG00000037640.16	novel	811	6	NA	NA	-2	1224	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	64.2588515303534	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTGTGTCTGGCTCCAT	NA	False	NA	33	True	NA	NA	NA	27430833	27451110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_27430896_27436360_27436414_27437727_27437855_27440381_27440481_27447592_27449596_27449677
ENSMUSG00000037640.16_11	chr7	+	3879	5	FSM	ENSMUSG00000037640.16	ENSMUST00000042641.14	2727	5	72	-1224	72	1224	multi-exon	FALSE	canonical	3	15	junction_1	62.997519792449	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTGTGTCTGGCTCCAT	NA	False	NA	33	True	NA	NA	NA	27431007	27451110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27431090_27436360_27436414_27437727_27437855_27440381_27440481_27447592
ENSMUSG00000037640.16_19	chr7	+	2434	1	ISM	ENSMUSG00000037640.16	ENSMUST00000108336.8	5896	5	17865	2015	12298	1226	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTGTCTGGCTCCATTT	618	False	NA	35	True	NA	NA	NA	27448678	27451112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27448700_27451100
ENSMUSG00000037640.16_2	chr7	+	3848	5	FSM	ENSMUSG00000037640.16	ENSMUST00000108336.8	5896	5	31	2017	9	1224	multi-exon	FALSE	canonical	3	74	junction_1	38.9422649572415	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTGTGTCTGGCTCCAT	NA	False	NA	33	True	NA	NA	NA	27430844	27451110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27430896_27436360_27436414_27437727_27437855_27440381_27440481_27447592
ENSMUSG00000037643.15_0	chr3	+	4440	18	FSM	ENSMUSG00000037643.15	ENSMUST00000108249.9	4708	18	45	223	45	-223	multi-exon	FALSE	canonical	3	904	junction_14	67.823095759034	2275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGGAGTGGACCATTTT	NA	False	NA	17	True	AATAAA	-13	NA	31049940	31106885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_31050235_31072698_31072821_31079278_31079369_31080401_31080453_31083634_31083721_31085232_31085374_31087326_31087379_31088647_31088707_31091994_31092172_31092598_31092697_31093177_31093265_31093516_31093653_31095590_31095679_31097839_31097966_31099030_31099111_31100621_31100712_31101120_31101237_31104338
ENSMUSG00000037643.15_90	chr3	+	1956	1	ISM	ENSMUSG00000037643.15	ENSMUST00000108249.9	4708	18	55034	223	12266	-223	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGGAGTGGACCATTTT	6650	False	NA	17	True	AATAAA	-13	NA	31104929	31106885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_31104900_31106900
ENSMUSG00000037646.11_1	chr15	+	3886	20	NNC	ENSMUSG00000037646.11	novel	4568	29	NA	NA	-132	-72470	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_19	14.5875900659951	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATCTCATTTGTCTTCTG	-6	True	NA	NA	False	AATAAA	-11	NA	35371539	35570628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_35371924_35372078_35372254_35379034_35379179_35417656_35417778_35422453_35422622_35423261_35423444_35430255_35430431_35438858_35439125_35445715_35445812_35446183_35446307_35446768_35446907_35447830_35447919_35448675_35448868_35452243_35452414_35455102_35455298_35456760_35456886_35472028_35472211_35533441_35533577_35534332_35534507_35569975
ENSMUSG00000037646.11_10	chr15	+	7345	39	ISM	ENSMUSG00000037646.11	ENSMUST00000048646.9	13757	62	390	136695	1	-49000	5prime_fragment	TRUE	canonical	3	30	junction_28	11.0548869879248	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATGCTTGGAACATAC	150	False	NA	9	True	AATAAA	-10	NA	35371695	35794680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_35371924_35372078_35372254_35379034_35379179_35417656_35417778_35422453_35422622_35423261_35423444_35430255_35430431_35438858_35439125_35445715_35445812_35446183_35446307_35446768_35446907_35447830_35447919_35448675_35448868_35452243_35452414_35455102_35455298_35456760_35456886_35472028_35472211_35533441_35533577_35534332_35534507_35572205_35572316_35576524_35576673_35597540_35597669_35607275_35607511_35617743_35617965_35623747_35623952_35639998_35640171_35640675_35640791_35642543_35642611_35646118_35646528_35652400_35652513_35668846_35669051_35671444_35671572_35674954_35675099_35709271_35709960_35745792_35745931_35770601_35771010_35792184_35792388_35793979_35794185_35794450
ENSMUSG00000037646.11_41	chr15	+	4211	14	ISM	ENSMUSG00000037646.11	ENSMUST00000048646.9	13757	62	507593	4	7031	-4	3prime_fragment	FALSE	canonical	3	28	junction_1	5.94849690128652	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATAAAGGTGTGCTGTGA	NA	False	NA	NA	False	AATAAA	-24	NA	35878898	35931371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_35878991_35879914_35880104_35883034_35883182_35884652_35884937_35887022_35887151_35887328_35887529_35905417_35905537_35910292_35911096_35914919_35915097_35917192_35917364_35923332_35923510_35925449_35925553_35926186_35926437_35930000
ENSMUSG00000037646.11_44	chr15	+	3646	11	ISM	ENSMUSG00000037646.11	ENSMUST00000048646.9	13757	62	513485	3	12923	-3	3prime_fragment	FALSE	canonical	3	31	junction_3	5.59016994374947	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATAAAGGTGTGCTGTGAG	NA	False	NA	NA	False	AATAAA	-25	NA	35884790	35931372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_35884937_35887022_35887151_35887328_35887529_35905417_35905537_35910292_35911096_35914919_35915097_35917192_35917364_35923332_35923510_35925449_35925553_35926186_35926437_35930000
ENSMUSG00000037646.11_45	chr15	+	3321	9	ISM	ENSMUSG00000037646.11	ENSMUST00000048646.9	13757	62	516074	3	15512	-3	3prime_fragment	FALSE	canonical	3	31	junction_1	5.699506557589	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATAAAGGTGTGCTGTGAG	NA	False	NA	NA	False	AATAAA	-25	NA	35887379	35931372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_35887529_35905417_35905537_35910292_35911096_35914919_35915097_35917192_35917364_35923332_35923510_35925449_35925553_35926186_35926437_35930000
ENSMUSG00000037646.11_47	chr15	+	2964	7	ISM	ENSMUSG00000037646.11	ENSMUST00000048646.9	13757	62	539075	4	38513	-4	3prime_fragment	FALSE	canonical	3	40	junction_1	3.63623737154524	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATAAAGGTGTGCTGTGA	NA	False	NA	NA	False	AATAAA	-24	NA	35910380	35931371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_35911096_35914919_35915097_35917192_35917364_35923332_35923510_35925449_35925553_35926186_35926437_35930000
ENSMUSG00000037646.11_52	chr15	+	2828	1	NIC	ENSMUSG00000037646.11	novel	13757	62	NA	NA	56678	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAAGGTGTGCTGTGAGT	NA	False	NA	NA	False	AATAAA	-26	NA	35928545	35931373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_35928500_35931400
ENSMUSG00000037646.11_54	chr15	+	13348	62	FSM	ENSMUSG00000037646.11	ENSMUST00000048646.9	13757	62	407	2	1	-2	multi-exon	TRUE	canonical	3	23	junction_44	12.5602231076886	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAAGGTGTGCTGTGAGT	167	False	NA	NA	False	AATAAA	-26	NA	35371712	35931373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_35371924_35372078_35372254_35379034_35379179_35417656_35417778_35422453_35422622_35423261_35423444_35430255_35430431_35438858_35439125_35445715_35445812_35446183_35446307_35446768_35446907_35447830_35447919_35448675_35448868_35452243_35452414_35455102_35455298_35456760_35456886_35472028_35472211_35533441_35533577_35534332_35534507_35572205_35572316_35576524_35576673_35597540_35597669_35607275_35607511_35617743_35617965_35623747_35623952_35639998_35640171_35640675_35640791_35642543_35642611_35646118_35646528_35652400_35652513_35668846_35669051_35671444_35671572_35674954_35675099_35709271_35709960_35745792_35745931_35770601_35771010_35792184_35792388_35793979_35794185_35794450_35794636_35834329_35834527_35840020_35840203_35841394_35841745_35846991_35847154_35869432_35869589_35875707_35875972_35876525_35876610_35876787_35876964_35877642_35877814_35878788_35878991_35879914_35880104_35883034_35883182_35884652_35884937_35887022_35887151_35887328_35887529_35905417_35905537_35910292_35911096_35914919_35915097_35917192_35917364_35923332_35923510_35925449_35925553_35926186_35926437_35930000
ENSMUSG00000037649.11_1	chr17	+	1110	5	FSM	ENSMUSG00000037649.11	ENSMUST00000236322.2	1108	5	-26	24	-26	-2	multi-exon	FALSE	canonical	3	37	junction_1	3.83242742918897	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCAGCGTGACCTCTCC	6772	False	NA	4	True	AATAAA	-12	NA	34354575	34358050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34354733_34356087_34356373_34356876_34357156_34357380_34357510_34357790
ENSMUSG00000037652.16_0	chr3	-	3068	1	ISM	ENSMUSG00000037652.16	ENSMUST00000168645.8	10976	15	66962	1	30672	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAATTTTTATTTCTTTA	NA	False	NA	-4	True	AATAAA	-14	NA	30956588	30953520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_30953500_30956600
ENSMUSG00000037652.16_2	chr3	-	4669	16	NIC	ENSMUSG00000037652.16	novel	3491	17	NA	NA	2	1071	intron_retention	FALSE	canonical	1	3	junction_1	3.32264954516723	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTTAGATGCCTCTTGT	NA	False	NA	NA	False	AATATA	-16	NA	31023552	30959861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_30961640_30968243_30968476_30968566_30968700_30970751_30970867_30976345_30976506_30983961_30984213_30985887_30986042_30990100_30990149_30990433_30991306_30996557_30996802_31002850_31002950_31005024_31005181_31012157_31012236_31015876_31016033_31019921_31020085_31023522
ENSMUSG00000037652.16_9	chr3	-	3319	15	FSM	ENSMUSG00000037652.16	ENSMUST00000129817.9	3019	15	-4	-296	2	-30	multi-exon	FALSE	canonical	1	3	junction_1	3.2919196062294	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAATTATTGATTTAC	NA	False	NA	NA	False	TATAAA	-11	NA	31023552	30961163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_30961640_30968243_30968476_30968566_30968700_30970751_30970867_30976345_30976506_30983961_30984213_30985887_30986042_30990433_30991306_30996557_30996802_31002850_31002950_31005024_31005181_31012157_31012236_31015876_31016033_31019921_31020085_31023522
ENSMUSG00000037656.10_0	chr8	+	3607	11	FSM	ENSMUSG00000037656.10	ENSMUST00000067786.9	3566	11	-46	5	-46	-5	multi-exon	FALSE	canonical	3	459	junction_6	45.0493063209635	1212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTTACTTCTGACGTC	NA	False	NA	10	True	AATAAA	-15	NA	22966757	23059623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_22966942_23025034_23025589_23028819_23028961_23030375_23030462_23035519_23035617_23048957_23049075_23050512_23050717_23050902_23051495_23054044_23054231_23055629_23055715_23058262
ENSMUSG00000037656.10_44	chr8	+	3633	11	NIC	ENSMUSG00000037656.10	novel	436	3	NA	NA	219	-5	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	165.224362610361	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTTACTTCTGACGTC	NA	False	NA	10	True	AATAAA	-15	NA	22996460	23059623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_22996671_23025034_23025589_23028819_23028961_23030375_23030462_23035519_23035617_23048957_23049075_23050512_23050717_23050902_23051495_23054044_23054231_23055629_23055715_23058262
ENSMUSG00000037661.15_10	chr3	+	4848	2	ISM	ENSMUSG00000037661.15	ENSMUST00000194979.6	346	4	-42	13817	1	2514	5prime_fragment	FALSE	canonical	3	294	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGGCTGTGATTCGAGCT	NA	False	NA	NA	False	NA	NA	NA	30910099	30936124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_30910207_30931383
ENSMUSG00000037661.15_14	chr3	+	1673	3	FSM	ENSMUSG00000037661.15	ENSMUST00000166278.7	1689	3	8	8	8	-6	multi-exon	FALSE	canonical	3	44	junction_2	125	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTAGCTCATTTTATTTG	NA	False	NA	26	True	AATAAA	-39	NA	30910106	30951333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_30910207_30931383_30931482_30949858
ENSMUSG00000037661.15_26	chr3	+	2156	4	FSM	ENSMUSG00000037661.15	ENSMUST00000108258.8	2139	4	-23	6	-1	-6	multi-exon	FALSE	canonical	3	82	junction_1	77.1895214535122	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTAGCTCATTTTATTTG	NA	False	NA	26	True	AATAAA	-39	NA	30910140	30951333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_30910395_30931383_30931711_30944090_30944191_30949858
ENSMUSG00000037661.15_28	chr3	+	2121	5	NIC	ENSMUSG00000037661.15	novel	1977	4	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	102.806857747915	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTAGCTCATTTTATTTG	NA	False	NA	26	True	AATAAA	-39	NA	30910099	30951333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_30910207_30931383_30931711_30944090_30944191_30948277_30948390_30949858
ENSMUSG00000037661.15_3	chr3	+	1780	4	FSM	ENSMUSG00000037661.15	ENSMUST00000194979.6	346	4	-42	-1392	1	-6	multi-exon	FALSE	canonical	3	233	junction_2	25.3026129524645	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTAGCTCATTTTATTTG	NA	False	NA	26	True	AATAAA	-39	NA	30910099	30951333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_30910207_30931383_30931482_30944090_30944191_30949858
ENSMUSG00000037661.15_4	chr3	+	2013	4	FSM	ENSMUSG00000037661.15	ENSMUST00000046748.13	1977	4	-38	2	1	-2	multi-exon	FALSE	canonical	3	100	junction_2	83.6341238171756	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCATTTTATTTGTTTT	NA	False	NA	30	True	AATAAA	-43	NA	30910099	30951337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_30910207_30931383_30931711_30944090_30944191_30949858
ENSMUSG00000037661.15_6	chr3	+	1892	5	NIC	ENSMUSG00000037661.15	novel	346	4	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	111.904814463007	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTAGCTCATTTTATTTG	NA	False	NA	26	True	AATAAA	-39	NA	30910099	30951333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_30910207_30931383_30931482_30944090_30944191_30948277_30948390_30949858
ENSMUSG00000037661.15_7	chr3	+	1959	4	NIC	ENSMUSG00000037661.15	novel	2139	4	NA	NA	13	-3	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	76.6130247122221	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCTCATTTTATTTGTTT	NA	False	NA	29	True	AATAAA	-42	NA	30910111	30951336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_30910395_30931383_30931482_30944090_30944191_30949858
ENSMUSG00000037664.14_1	chr7	-	1837	4	FSM	ENSMUSG00000037664.14	ENSMUST00000037287.8	1901	4	56	8	2	-8	multi-exon	FALSE	canonical	2	6	junction_2	4.02768199119819	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAATCATACTTGTAG	NA	False	NA	NA	False	AATAAA	-8	NA	143014731	143012086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143012759_143012848_143012988_143013531_143014416_143014589
ENSMUSG00000037669.16_1	chr12	+	2691	7	FSM	ENSMUSG00000037669.16	ENSMUST00000037383.13	2737	7	41	5	1	-5	multi-exon	TRUE	canonical	3	35	junction_1	76.8839312788367	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCACTACTGTGTGTGGTC	NA	False	NA	13	True	AATAAA	-13	NA	8258147	8335754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ENSMUSG00000037669.16_19	chr12	+	1639	1	ISM	ENSMUSG00000037669.16	ENSMUST00000037383.13	2737	7	76009	5	15696	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCACTACTGTGTGTGGTC	1892	False	NA	13	True	AATAAA	-13	NA	8334115	8335754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_8334100_8335800
ENSMUSG00000037669.16_2	chr12	+	2700	7	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	188	junction_5	23.7533623350932	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCACTACTGTGTGTGGTC	NA	False	NA	13	True	AATAAA	-13	NA	8258150	8335754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ENSMUSG00000037669.16_7	chr12	+	2559	6	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	91.7243697171041	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCACTACTGTGTGTGGTC	NA	False	NA	13	True	AATAAA	-13	NA	8258147	8335754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_8258205_8270599_8270756_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ENSMUSG00000037674.16_1	chr9	+	5084	10	NIC	ENSMUSG00000037674.16	novel	7880	9	NA	NA	-6	-2642	intron_retention	FALSE	canonical	3	93	junction_8	52.1964475400622	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTCTGGGTCTTTATTT	671	False	NA	7	True	AGTAAA	-20	NA	72439515	72527469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_72439940_72440099_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902_72519111_72522318_72522615_72523918
ENSMUSG00000037674.16_2	chr9	+	1979	7	FSM	ENSMUSG00000037674.16	ENSMUST00000184015.2	1554	7	-494	69	1	-6	multi-exon	FALSE	canonical	3	175	junction_3	16.2933183305987	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCATTGACTGATTACCT	678	False	NA	3	True	AATAAA	-12	NA	72439522	72519699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902
ENSMUSG00000037674.16_29	chr9	+	4092	1	ISM	ENSMUSG00000037674.16	ENSMUST00000163401.9	7880	9	86488	10	8339	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATACTGACTGGATGTTA	NA	False	NA	NA	False	ATTAAA	-11	NA	72526009	72530101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_72526000_72530100
ENSMUSG00000037674.16_5	chr9	+	1813	8	FSM	ENSMUSG00000037674.16	ENSMUST00000183372.8	1457	8	-363	7	3	-7	multi-exon	FALSE	canonical	3	107	junction_1	37.8380005512221	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCATTGACTGATTACC	683	False	NA	2	True	AATAAA	-11	NA	72439527	72519698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72439940_72440099_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902
ENSMUSG00000037674.16_7	chr9	+	5223	9	FSM	ENSMUSG00000037674.16	ENSMUST00000163401.9	7880	9	10	2647	7	-2647	multi-exon	FALSE	canonical	3	93	junction_7	49.9699909945959	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGAGCAGTCTGGGTCTT	687	False	NA	2	True	AGTAAA	-15	NA	72439531	72527464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902_72519111_72522318_72522615_72523918
ENSMUSG00000037679.10_2	chr12	+	2572	14	ISM	ENSMUSG00000037679.10	ENSMUST00000222275.2	2795	15	732	1	732	-1	3prime_fragment	FALSE	canonical	0	0	junction_1	1.91536916892134	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTGTGGTATTTAGACC	NA	False	NA	10	True	AATAAA	-18	NA	112571822	112581990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112571953_112572227_112572290_112572677_112572781_112573406_112573493_112573928_112574030_112574762_112574834_112574910_112575019_112575281_112575353_112576106_112576228_112576552_112576718_112576895_112576999_112577128_112577291_112577843_112578471_112581328
ENSMUSG00000037681.14_0	chr9	-	4516	23	FSM	ENSMUSG00000037681.14	ENSMUST00000042158.13	4483	23	-37	4	2	-4	multi-exon	FALSE	canonical	3	14	junction_20	5.80538365130531	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACTTGTGTGTATATTTC	NA	False	NA	-3	True	AATAAA	-16	NA	99240608	99192019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_99193731_99193998_99194049_99197239_99197346_99198698_99198831_99199258_99199358_99199940_99200441_99201555_99201706_99202307_99202395_99202886_99202956_99203434_99203498_99203579_99203643_99204150_99204241_99204649_99204699_99206210_99206294_99206949_99207121_99209951_99210073_99211808_99211865_99212753_99212844_99213411_99213479_99214858_99214936_99218117_99218253_99220820_99220863_99240103
ENSMUSG00000037681.14_13	chr9	-	1219	1	ISM	ENSMUSG00000037681.14	ENSMUST00000042158.13	4483	23	47335	2	11520	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTGTATATTTCTA	NA	False	NA	-1	True	AATAAA	-18	NA	99193236	99192017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_99192000_99193200
ENSMUSG00000037681.14_15	chr9	-	2190	6	ISM	ENSMUSG00000037681.14	ENSMUST00000042158.13	4483	23	40542	1	4727	-1	3prime_fragment	TRUE	canonical	3	18	junction_4	7.57891812859857	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTGTGTATATTTCTAT	NA	False	NA	0	True	AATAAA	-19	NA	99200029	99192016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_99193731_99193998_99194049_99197239_99197346_99198698_99198831_99199258_99199358_99199940
ENSMUSG00000037681.14_2	chr9	-	2856	9	ISM	ENSMUSG00000037681.14	ENSMUST00000042158.13	4483	23	37667	1	1852	-1	3prime_fragment	FALSE	canonical	3	18	junction_4	6.44083651399413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTGTGTATATTTCTAT	NA	False	NA	0	True	AATAAA	-19	NA	99202904	99192016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_99193731_99193998_99194049_99197239_99197346_99198698_99198831_99199258_99199358_99199940_99200441_99201555_99201706_99202307_99202395_99202886
ENSMUSG00000037681.14_6	chr9	-	4804	22	NIC	ENSMUSG00000037681.14	novel	4483	23	NA	NA	-15	-1	intron_retention	FALSE	canonical	3	14	junction_19	4.48428852075945	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTGTGTATATTTCTAT	NA	False	NA	0	True	AATAAA	-19	NA	99240625	99192016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_99194049_99197239_99197346_99198698_99198831_99199258_99199358_99199940_99200441_99201555_99201706_99202307_99202395_99202886_99202956_99203434_99203498_99203579_99203643_99204150_99204241_99204649_99204699_99206210_99206294_99206949_99207121_99209951_99210073_99211808_99211865_99212753_99212844_99213411_99213479_99214858_99214936_99218117_99218253_99220820_99220863_99240103
ENSMUSG00000037685.16_1	chr5	-	7107	36	FSM	ENSMUSG00000037685.16	ENSMUST00000135930.8	8069	36	-61	1023	0	-2	multi-exon	TRUE	canonical	3	27	junction_2	10.9452813428194	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTATACTTTGCTGTGTT	NA	False	NA	-7	True	AATAAA	-16	NA	68004774	67776505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_67780040_67781352_67781445_67788033_67788127_67788829_67788919_67805035_67805144_67805867_67805925_67808930_67808993_67813248_67813328_67817212_67817336_67817436_67817512_67824663_67824775_67824866_67825051_67840100_67840274_67860322_67860388_67863248_67863388_67887134_67887275_67889511_67889597_67895755_67895826_67902922_67902973_67904620_67904704_67906393_67906500_67908355_67908429_67918456_67918546_67919858_67919937_67922206_67922335_67924362_67924529_67926394_67926507_67932065_67932194_67933471_67933542_67938330_67938405_67943968_67944010_67962999_67963046_67969430_67969530_67970434_67970535_67971951_67972067_68004504
ENSMUSG00000037685.16_15	chr5	-	3468	18	ISM	ENSMUSG00000037685.16	ENSMUST00000135930.8	8069	36	-61	125800	0	22695	5prime_fragment	FALSE	canonical	3	36	junction_8	11.382314941417	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAACAGCAAAGTCTGGTC	NA	False	NA	NA	False	AATAAA	-17	NA	68004774	67901282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_67902973_67904620_67904704_67906393_67906500_67908355_67908429_67918456_67918546_67919858_67919937_67922206_67922335_67924362_67924529_67926394_67926507_67932065_67932194_67933471_67933542_67938330_67938405_67943968_67944010_67962999_67963046_67969430_67969530_67970434_67970535_67971951_67972067_68004504
ENSMUSG00000037685.16_16	chr5	-	848	7	FSM	ENSMUSG00000037685.16	ENSMUST00000113652.8	854	7	-1	7	-1	-7	multi-exon	FALSE	canonical	3	53	junction_2	8.34166250416147	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAACCTCTCATGATTCTT	NA	False	NA	NA	False	AATAAA	-18	NA	68004775	67938228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_67938405_67943968_67944010_67962999_67963046_67969430_67969530_67970434_67970535_67971951_67972067_68004504
ENSMUSG00000037685.16_2	chr5	-	3281	1	ISM	ENSMUSG00000037685.16	ENSMUST00000135930.8	8069	36	225943	7	38607	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAAGGAACTGGCTGAA	5447	False	NA	NA	False	AATAAA	-16	NA	67778770	67775489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_67775500_67778800
ENSMUSG00000037685.16_7	chr5	-	7028	35	NIC	ENSMUSG00000037685.16	novel	7154	37	NA	NA	0	-7	intron_retention	FALSE	canonical	1	4	junction_29	12.9002025144373	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTAGTTATACTTTGCT	NA	False	NA	-12	True	AATAAA	-11	NA	68004774	67776510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_67780040_67781352_67781445_67788033_67788127_67788829_67788919_67805035_67805144_67805867_67805925_67808930_67808993_67813248_67813328_67817212_67817336_67817436_67817512_67824663_67824775_67824866_67825051_67840100_67840274_67860322_67860388_67863248_67863388_67887134_67887275_67889511_67889597_67895755_67895826_67902922_67902973_67904620_67904704_67906393_67906500_67908355_67908429_67918456_67918546_67919858_67919937_67922206_67922335_67924362_67924529_67926394_67926507_67932065_67932194_67933471_67933542_67943968_67944010_67962999_67963046_67969430_67969530_67970434_67970535_67971951_67972067_68004504
ENSMUSG00000037685.16_9	chr5	-	3749	26	ISM	ENSMUSG00000037685.16	ENSMUST00000135930.8	8069	36	-55	48221	4	15781	5prime_fragment	FALSE	canonical	3	35	junction_4	11.0079244183452	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATAATCTGATGATGCA	NA	False	NA	NA	False	ATTAAA	-2	NA	68004768	67823703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_67824775_67824866_67825051_67840100_67840274_67860322_67860388_67863248_67863388_67887134_67887275_67889511_67889597_67895755_67895826_67902922_67902973_67904620_67904704_67906393_67906500_67908355_67908429_67918456_67918546_67919858_67919937_67922206_67922335_67924362_67924529_67926394_67926507_67932065_67932194_67933471_67933542_67938330_67938405_67943968_67944010_67962999_67963046_67969430_67969530_67970434_67970535_67971951_67972067_68004504
ENSMUSG00000037686.7_0	chr12	+	4543	13	NIC	ENSMUSG00000037686.7	novel	2722	15	NA	NA	-36	8	intron_retention	TRUE	canonical	3	16	junction_8	3.76662979332984	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGATGGGTCTGTGGGC	NA	False	NA	10	True	AATAAA	-24	NA	112073266	112094001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_112073408_112078625_112080940_112082000_112082085_112082834_112082962_112086387_112086501_112087298_112087482_112087586_112087701_112088183_112088298_112089377_112089474_112089723_112089888_112091243_112091331_112092745_112092846_112093095
ENSMUSG00000037686.7_10	chr12	+	993	2	ISM	ENSMUSG00000037686.7	ENSMUST00000222970.2	1410	6	5165	0	5165	0	3prime_fragment	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTTGGCCTGGATGGGT	NA	False	NA	2	True	AATAAA	-16	NA	112092750	112093993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112092846_112093095
ENSMUSG00000037686.7_16	chr12	+	3946	12	NIC	ENSMUSG00000037686.7	novel	2722	15	NA	NA	-306	-6	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	3.49261322041792	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGCTCTTTGGCCTGG	NA	False	NA	-4	True	AATAAA	-10	NA	112079067	112093987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_112080940_112082000_112082085_112082834_112082962_112086387_112086501_112087298_112087482_112087586_112087701_112088183_112088298_112089377_112089474_112089723_112089888_112091243_112091331_112092745_112092846_112093095
ENSMUSG00000037686.7_3	chr12	+	2545	15	FSM	ENSMUSG00000037686.7	ENSMUST00000079400.6	2722	15	177	0	-13	0	multi-exon	FALSE	canonical	2	5	junction_3	6.52467842666814	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTTGGCCTGGATGGGT	NA	False	NA	2	True	AATAAA	-16	NA	112073289	112093993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112073408_112078625_112078735_112079414_112079527_112080813_112080940_112082000_112082085_112082834_112082962_112086387_112086501_112087298_112087482_112087586_112087701_112088183_112088298_112089377_112089474_112089723_112089888_112091243_112091331_112092745_112092846_112093095
ENSMUSG00000037686.7_8	chr12	+	1082	3	ISM	ENSMUSG00000037686.7	ENSMUST00000222970.2	1410	6	3655	6	3655	-6	3prime_fragment	FALSE	canonical	3	25	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGCTCTTTGGCCTGG	NA	False	NA	-4	True	AATAAA	-10	NA	112091240	112093987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112091331_112092745_112092846_112093095
ENSMUSG00000037692.15_20	chr4	+	6210	6	NIC	ENSMUSG00000037692.15	novel	5898	6	NA	NA	-58	-27	intron_retention	FALSE	canonical	3	39	junction_1	32.2204903749152	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAATGAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	132766745	132804912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_132767098_132782323_132782515_132788091_132788204_132788337_132788376_132788686_132793589_132804297
ENSMUSG00000037692.15_21	chr4	+	6295	6	FSM	ENSMUSG00000037692.15	ENSMUST00000105914.2	5898	6	-38	-359	-38	-27	multi-exon	FALSE	canonical	3	23	junction_2	36.5217743271052	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAATGAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	132766765	132804912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132767098_132782323_132782515_132787986_132788204_132788337_132788376_132788686_132793589_132804297
ENSMUSG00000037692.15_22	chr4	+	5888	5	NIC	ENSMUSG00000037692.15	novel	5898	6	NA	NA	-44	4808	intron_retention	FALSE	canonical	3	39	junction_1	10.2072278312968	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132766759	132793895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_132767098_132782323_132782515_132788091_132788204_132788337_132788376_132788686
ENSMUSG00000037692.15_30	chr4	+	3111	1	NIC	ENSMUSG00000037692.15	novel	6341	7	NA	NA	-2775	4808	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132790784	132793895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_132790800_132793900
ENSMUSG00000037692.15_31	chr4	+	3226	2	ISM	ENSMUSG00000037692.15	ENSMUST00000105914.2	5898	6	24174	-359	-2582	-27	3prime_fragment	FALSE	canonical	3	130	junction_1	0	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAATGAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	132790977	132804912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_132793589_132804297
ENSMUSG00000037692.15_6	chr4	+	5975	7	NIC	ENSMUSG00000037692.15	novel	6341	7	NA	NA	-4	-27	intron_retention	FALSE	canonical	3	7	junction_1	37.3972666856223	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAATGAAAAAAAGC	1185	False	NA	NA	False	NA	NA	NA	132738812	132804912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_132738835_132739503_132739599_132782323_132782515_132788091_132788204_132788337_132788376_132788686_132793589_132804297
ENSMUSG00000037697.20_11	chr14	-	3537	13	NIC	ENSMUSG00000037697.20	novel	9820	14	NA	NA	-20	0	intron_retention	FALSE	canonical	3	14	junction_1	39.0799572102575	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCACTAGTTCAATTATT	NA	False	NA	56	True	ATTAAA	-14	NA	45895575	45832182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_45833122_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45860297_45860400_45867036_45867211_45894678
ENSMUSG00000037697.20_2	chr14	-	3514	13	FSM	ENSMUSG00000037697.20	ENSMUST00000111828.4	9802	13	29	6259	-15	0	multi-exon	FALSE	canonical	3	71	junction_11	14.0049594390305	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCACTAGTTCAATTATT	NA	False	NA	56	True	ATTAAA	-14	NA	45895570	45832182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_45833122_45836558_45836643_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45867036_45867211_45894678
ENSMUSG00000037697.20_29	chr14	-	3225	2	ISM	ENSMUSG00000037697.20	ENSMUST00000051310.13	5012	12	26	34251	-19	982	5prime_fragment	FALSE	canonical	3	117	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	45895574	45864881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_45867211_45894678
ENSMUSG00000037697.20_3	chr14	-	3617	14	FSM	ENSMUSG00000037697.20	ENSMUST00000087320.13	9820	14	-55	6258	-18	-2	multi-exon	FALSE	canonical	3	27	junction_12	30.2633412313513	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGCACTAGTTCAATTA	NA	False	NA	54	True	ATTAAA	-12	NA	45895573	45832184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_45833122_45836558_45836643_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45860297_45860400_45867036_45867211_45894678
ENSMUSG00000037697.20_5	chr14	-	3394	12	FSM	ENSMUSG00000037697.20	ENSMUST00000051310.13	5012	12	68	1550	-14	-2	multi-exon	FALSE	canonical	3	14	junction_1	31.1368613098913	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACTAGTTCAATTATTTT	NA	False	NA	58	True	ATTAAA	-16	NA	45895532	45832180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_45833122_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45867036_45867211_45894678
ENSMUSG00000037697.20_7	chr14	-	2416	11	ISM	ENSMUSG00000037697.20	ENSMUST00000129599.8	2802	12	2386	0	-18	0	3prime_fragment	TRUE	canonical	3	102	junction_6	8.17557337438788	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGTTCAATTATTTTTT	NA	False	NA	60	True	ATTAAA	-18	NA	45858261	45832178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_45833122_45836558_45836643_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168
ENSMUSG00000037697.20_9	chr14	-	3347	12	NIC	ENSMUSG00000037697.20	novel	3573	15	NA	NA	-22	0	intron_retention	FALSE	canonical	2	3	junction_11	32.6810279332958	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCACTAGTTCAATTATT	NA	False	NA	56	True	ATTAAA	-14	NA	45895577	45832182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_45833122_45836558_45836643_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45894678
ENSMUSG00000037703.15_0	chr2	-	4199	5	FSM	ENSMUSG00000037703.15	ENSMUST00000045761.7	4201	5	3	-1	3	1	multi-exon	FALSE	canonical	2	6	junction_3	1.87082869338697	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGATGGAAAGAGTTTT	4020	False	NA	NA	False	NA	NA	NA	130484720	130474760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130477385_130477692_130478548_130478862_130479340_130479804_130479968_130484640
ENSMUSG00000037706.18_0	chr7	+	1472	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	50	11	-5	7	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	5849	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTAATGGGACTGCCAGA	NA	False	NA	31	True	AATAAA	-19	NA	142606525	142621660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
ENSMUSG00000037709.14_0	chr6	-	4283	18	FSM	ENSMUSG00000037709.14	ENSMUST00000089860.12	5786	18	49	1454	4	-1454	multi-exon	FALSE	canonical	1	1	junction_14	2.83331637148054	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAATACCATGGTTTCCT	NA	False	NA	NA	False	AATAAA	-30	NA	59001485	58910528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_58912697_58916280_58916383_58917105_58917303_58921105_58921190_58923024_58923121_58930434_58930519_58931186_58931408_58932200_58932283_58933021_58933161_58933638_58933844_58942045_58942194_58950139_58950183_58951015_58951093_58960873_58961061_58964140_58964318_58966728_58966771_58980449_58980492_59001296
ENSMUSG00000037710.9_0	chr10	-	732	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	103	249	103	-249	multi-exon	FALSE	canonical	3	1606	junction_1	82	419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCATGTACATGTACAT	1356	False	NA	-35	True	ATTAAA	-8	NA	71180681	71166558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_71166957_71172043_71172250_71180553
ENSMUSG00000037712.18_0	chr14	-	3213	15	FSM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	74	6	74	-6	multi-exon	FALSE	canonical	3	310	junction_11	31.8875575504085	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAATGTTTTCTTTTGTA	NA	False	NA	-11	True	AATAAA	-14	NA	45767501	45696257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
ENSMUSG00000037712.18_3	chr14	-	2908	13	ISM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	25415	6	14237	-6	3prime_fragment	FALSE	canonical	3	310	junction_11	29.1328375243851	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAATGTTTTCTTTTGTA	NA	False	NA	-11	True	AATAAA	-14	NA	45742160	45696257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953
ENSMUSG00000037712.18_5	chr14	-	3324	14	ISM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	305	6	-27	-6	3prime_fragment	FALSE	canonical	3	310	junction_11	30.5207272668822	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAATGTTTTCTTTTGTA	NA	False	NA	-11	True	AATAAA	-14	NA	45767270	45696257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881
ENSMUSG00000037720.17_0	chr5	+	1172	8	FSM	ENSMUSG00000037720.17	ENSMUST00000037918.12	6247	8	138	4937	-1	-135	multi-exon	FALSE	canonical	3	347	junction_1	43.3504937240909	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAATTCTGAAATTTG	NA	False	NA	9	True	AATACA	-13	NA	67418045	67443867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
ENSMUSG00000037720.17_1	chr5	+	1630	9	FSM	ENSMUSG00000037720.17	ENSMUST00000160352.8	5322	9	-14	3706	-13	1096	multi-exon	FALSE	canonical	3	67	junction_8	122.604483502847	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATACTGATTTCTAATG	NA	False	NA	12	True	AATAAA	-19	NA	67418025	67445098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438_67443560_67444352
ENSMUSG00000037720.17_18	chr5	+	3035	1	ISM	ENSMUSG00000037720.17	ENSMUST00000037918.12	6247	8	27856	6	27525	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAAGCAGGTTTAGAAAT	NA	False	NA	NA	False	AATAAA	-12	NA	67445763	67448798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_67445800_67448800
ENSMUSG00000037720.17_8	chr5	+	1194	7	FSM	ENSMUSG00000037720.17	ENSMUST00000161369.3	6164	7	33	4937	33	-135	multi-exon	FALSE	canonical	3	385	junction_4	35.264476932649	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAATTCTGAAATTTG	NA	False	NA	9	True	AATACA	-13	NA	67418180	67443867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
ENSMUSG00000037722.9_0	chr14	-	1530	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	139	1119	-29	701	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAATCTTGTCTTGTGTTT	NA	False	NA	-3	True	ATTAAA	-28	NA	45626279	45614909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
ENSMUSG00000037722.9_14	chr14	-	1438	5	FSM	ENSMUSG00000037722.9	ENSMUST00000227468.2	1490	5	738	-686	-94	686	multi-exon	FALSE	canonical	3	1091	junction_1	77.5387000148958	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTCTTTCATGTTAGAA	NA	False	NA	-18	True	ATTAAA	-13	NA	45622203	45614924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037
ENSMUSG00000037725.9_12	chr8	-	1475	6	ISM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	8776	291	-1177	-6	3prime_fragment	FALSE	canonical	3	265	junction_5	14.7186955943793	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACATTTCATTGATTGA	4608	False	NA	-7	True	AATAAA	-20	NA	22667059	22658466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789
ENSMUSG00000037725.9_13	chr8	-	3952	8	NIC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	19	-6	intron_retention	FALSE	canonical	3	249	junction_5	11.2431384971149	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACATTTCATTGATTGA	NA	False	NA	-7	True	AATAAA	-20	NA	22675816	22658466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_22658991_22659728_22659964_22663277_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
ENSMUSG00000037725.9_2	chr8	-	2286	9	FSM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	16	291	16	-6	multi-exon	FALSE	canonical	3	249	junction_6	17.1973835219198	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACATTTCATTGATTGA	NA	False	NA	-7	True	AATAAA	-20	NA	22675819	22658466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
ENSMUSG00000037725.9_5	chr8	-	2283	9	NNC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	313	-6	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	79.0283770236995	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACATTTCATTGATTGA	NA	False	NA	-7	True	AATAAA	-20	NA	22675522	22658466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675405
ENSMUSG00000037730.14_0	chr3	+	3403	8	FSM	ENSMUSG00000037730.14	ENSMUST00000195751.2	3474	8	-5	76	0	57	multi-exon	FALSE	canonical	3	56	junction_2	49.6608908662808	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATGTTCAGCTAATCT	8787	False	NA	NA	False	AATAAA	-12	NA	30656787	30672574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
ENSMUSG00000037730.14_1	chr3	+	3533	8	FSM	ENSMUSG00000037730.14	ENSMUST00000192715.6	5555	8	574	1448	0	57	multi-exon	FALSE	canonical	3	110	junction_2	33.260873624812	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATGTTCAGCTAATCT	8787	False	NA	NA	False	AATAAA	-12	NA	30656787	30672574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
ENSMUSG00000037730.14_2	chr3	+	3318	7	FSM	ENSMUSG00000037730.14	ENSMUST00000195396.6	4775	7	4	1453	-2	52	multi-exon	FALSE	canonical	3	28	junction_5	75.410911382608	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGTATAAAATGTTCAGCT	8783	False	NA	NA	False	AATAAA	-7	NA	30656783	30672569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30667700_30667788_30670699
ENSMUSG00000037730.14_23	chr3	+	905	1	ISM	ENSMUSG00000037730.14	ENSMUST00000192715.6	5555	8	15458	1446	4012	59	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTTCAGCTAATCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	30671671	30672576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_30671700_30672600
ENSMUSG00000037730.14_6	chr3	+	3453	7	FSM	ENSMUSG00000037730.14	ENSMUST00000047502.9	3394	7	-2	-57	-2	57	multi-exon	FALSE	canonical	3	28	junction_5	66.6243615770955	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATGTTCAGCTAATCT	8783	False	NA	NA	False	AATAAA	-12	NA	30656783	30672574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589_30665769_30667700_30667788_30670699
ENSMUSG00000037731.6_0	chr4	-	2224	3	ISM	ENSMUSG00000037731.6	ENSMUST00000045154.6	3079	6	10291	4	10291	-4	3prime_fragment	FALSE	canonical	0	0	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTGAAATGTCTTGTCT	2024	False	NA	NA	False	AATAAA	-19	NA	132513407	132509157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132510317_132510658_132510810_132512493
ENSMUSG00000037731.6_2	chr4	-	3048	6	FSM	ENSMUSG00000037731.6	ENSMUST00000045154.6	3079	6	24	7	24	-7	multi-exon	FALSE	canonical	0	0	junction_1	1.16619037896906	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGAGTGAAATGTCTTG	9936	False	NA	NA	False	AATAAA	-16	NA	132523674	132509160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132510317_132510658_132510810_132512493_132513582_132516855_132517264_132519788_132519930_132523570
ENSMUSG00000037736.21_0	chr5	+	3586	25	NIC	ENSMUSG00000037736.21	novel	5192	26	NA	NA	7	-8	intron_retention	FALSE	canonical	0	0	junction_1	0.563656219102862	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAGAAATTAAACACGTTA	4691	False	NA	NA	False	AATAAA	-20	NA	66903176	67211976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_66903349_67015225_67015297_67039241_67039312_67111011_67111119_67116930_67116962_67118499_67118611_67126418_67126615_67131752_67132006_67154462_67154590_67155989_67156148_67156322_67156732_67159770_67159993_67173807_67173899_67174959_67175121_67179234_67179341_67183414_67183456_67184830_67184912_67186100_67186194_67187044_67187150_67188168_67188294_67190420_67190543_67191508_67191633_67201688_67201798_67204041_67204145_67211578
ENSMUSG00000037740.9_0	chr2	+	967	4	FSM	ENSMUSG00000037740.9	ENSMUST00000145614.2	4278	4	9	3302	9	-1	multi-exon	FALSE	canonical	3	506	junction_2	32.273139846559	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTGCCCATTTACTGGC	394	False	NA	13	True	NA	NA	NA	130405670	130407313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_130405911_130406000_130406148_130406227_130406352_130406857
ENSMUSG00000037740.9_1	chr2	+	1045	3	FSM	ENSMUSG00000037740.9	ENSMUST00000046149.9	1057	3	11	1	11	-1	multi-exon	FALSE	canonical	3	543	junction_1	21	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTGCCCATTTACTGGC	396	False	NA	13	True	NA	NA	NA	130405672	130407313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_130405911_130406000_130406352_130406857
ENSMUSG00000037740.9_3	chr2	+	290	1	ISM	ENSMUSG00000037740.9	ENSMUST00000046149.9	1057	3	1363	0	1363	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	506	False	NA	14	True	NA	NA	NA	130407024	130407314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_130407000_130407300
ENSMUSG00000037740.9_6	chr2	+	157	1	ISM	ENSMUSG00000037740.9	ENSMUST00000145614.2	4278	4	3651	1146	3651	-1146	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	2794	False	NA	NA	False	NA	NA	NA	130409312	130409469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_130409300_130409500
ENSMUSG00000037742.15_0	chr9	-	1732	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	53	9	53	-9	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	10125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCTGTGTTGGTCAAT	7153	False	NA	93	True	ATTAAA	-13	NA	78388953	78385739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
ENSMUSG00000037742.15_1	chr9	-	1230	5	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1687	9	-321	-9	3prime_fragment	FALSE	canonical	3	11573	junction_3	1660.48372093797	855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCTGTGTTGGTCAAT	8787	False	NA	93	True	ATTAAA	-13	NA	78387319	78385739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133
ENSMUSG00000037742.15_3	chr9	-	1693	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1042	9	6	-9	3prime_fragment	FALSE	canonical	3	11573	junction_3	1591.79487267256	1266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCTGTGTTGGTCAAT	8142	False	NA	93	True	ATTAAA	-13	NA	78387964	78385739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
ENSMUSG00000037742.15_4	chr9	-	1490	6	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1335	9	110	-9	3prime_fragment	FALSE	canonical	3	11573	junction_3	1608.66794584837	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCTGTGTTGGTCAAT	8435	False	NA	93	True	ATTAAA	-13	NA	78387671	78385739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522
ENSMUSG00000037742.15_5	chr9	-	791	3	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	2292	9	69	-9	3prime_fragment	FALSE	canonical	3	15409	junction_1	167.5	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCTGTGTTGGTCAAT	9392	False	NA	93	True	ATTAAA	-13	NA	78386714	78385739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_78386141_78386239_78386475_78386559
ENSMUSG00000037747.10_0	chr10	-	1853	5	FSM	ENSMUSG00000037747.10	ENSMUST00000046513.10	2877	5	-19	1043	-19	152	multi-exon	FALSE	canonical	3	11	junction_1	4.33012701892219	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATATTTTATTTGTACG	NA	False	NA	NA	False	AATAAA	-9	NA	70435140	70394554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_70395612_70401003_70401122_70404731_70404907_70406652_70406850_70434834
ENSMUSG00000037747.10_1	chr10	-	591	1	ISM	ENSMUSG00000037747.10	ENSMUST00000046513.10	2877	5	39976	1043	33505	152	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATATTTTATTTGTACG	NA	False	NA	NA	False	AATAAA	-9	NA	70395145	70394554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_70394600_70395100
ENSMUSG00000037750.17_0	chr11	+	3207	3	FSM	ENSMUSG00000037750.17	ENSMUST00000073705.12	3258	3	32	19	-16	-19	multi-exon	FALSE	canonical	3	80	junction_2	31	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAGGAAAAAAAAAAG	2630	False	NA	-17	True	TTTAAA	-29	NA	77985517	78047507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77985618_78033918_78034041_78044522
ENSMUSG00000037750.17_1	chr11	+	3100	3	FSM	ENSMUSG00000037750.17	ENSMUST00000100782.4	2473	3	-16	-611	-16	-14	multi-exon	FALSE	canonical	3	49	junction_2	46.5	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGGAAAAAAAAAAGGAAAA	2630	False	NA	-12	True	TTTAAA	-34	NA	77985517	78047512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77985618_78033918_78034041_78044634
ENSMUSG00000037750.17_5	chr11	+	3249	3	NIC	ENSMUSG00000037750.17	novel	3358	3	NA	NA	-22	-19	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	20.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAGGAAAAAAAAAAG	NA	False	NA	-17	True	TTTAAA	-29	NA	78006409	78047507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_78006664_78033918_78034041_78044634
ENSMUSG00000037750.17_6	chr11	+	3352	3	FSM	ENSMUSG00000037750.17	ENSMUST00000155571.2	3358	3	-13	19	-13	-19	multi-exon	FALSE	canonical	3	8	junction_1	36	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAGGAAAAAAAAAAG	NA	False	NA	-17	True	TTTAAA	-29	NA	78006418	78047507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78006664_78033918_78034041_78044522
ENSMUSG00000037750.17_8	chr11	+	2082	1	ISM	ENSMUSG00000037750.17	ENSMUST00000073705.12	3258	3	59949	10	39003	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGGAAAAATGC	7434	False	NA	-8	True	TTTAAA	-38	NA	78045434	78047516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78045400_78047500
ENSMUSG00000037752.5_0	chr4	-	4338	4	NNC	ENSMUSG00000037752.5	novel	4245	3	NA	NA	-22	83555	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.2339898266013	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAAAACATCATCTTTT	4085	False	NA	NA	False	NA	NA	NA	132459816	132368652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_132368828_132452248_132455882_132458186_132458384_132459483
ENSMUSG00000037752.5_11	chr4	-	1565	3	FSM	ENSMUSG00000037752.5	ENSMUST00000150104.2	376	3	15	-1204	15	1204	multi-exon	FALSE	canonical	3	5	junction_2	21.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGTATGTACCACTAAG	4077	False	NA	-11	True	ATTAAA	-19	NA	132459824	132454612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132455882_132458186_132458384_132459725
ENSMUSG00000037752.5_12	chr4	-	4275	3	NIC	ENSMUSG00000037752.5	novel	4245	3	NA	NA	9	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	24	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCAAACTTACAATTGTTTA	4071	False	NA	NA	False	AATAAA	-10	NA	132459830	132452217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_132455882_132458186_132458451_132459483
ENSMUSG00000037752.5_13	chr4	-	1448	2	ISM	ENSMUSG00000037752.5	ENSMUST00000150104.2	376	3	1481	-1211	1436	1211	3prime_fragment	FALSE	canonical	3	48	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACCACTAAGTGTAGTC	5543	False	NA	-4	True	ATTAAA	-26	NA	132458358	132454605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132455882_132458186
ENSMUSG00000037752.5_2	chr4	-	1812	3	FSM	ENSMUSG00000037752.5	ENSMUST00000045550.5	4245	3	27	2406	9	1203	multi-exon	FALSE	canonical	3	48	junction_1	6.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACCAGTATGTACCACTAA	4071	False	NA	-12	True	ATTAAA	-18	NA	132459830	132454613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132455882_132458186_132458384_132459483
ENSMUSG00000037754.14_0	chr2	+	2910	11	FSM	ENSMUSG00000037754.14	ENSMUST00000045503.11	6408	11	22	3476	22	-3476	multi-exon	FALSE	canonical	1	1	junction_3	2.56124969497314	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAACAGCATCCTAGCCG	6346	False	NA	NA	False	NA	NA	NA	158509060	158604778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_158509170_158537781_158538131_158582655_158582727_158588437_158588584_158591086_158591191_158592993_158593119_158597063_158597190_158597732_158597809_158598839_158598970_158599057_158599227_158603273
ENSMUSG00000037761.17_0	chr2	+	2363	9	FSM	ENSMUSG00000037761.17	ENSMUST00000045644.9	2402	9	29	10	29	3	multi-exon	FALSE	canonical	0	0	junction_4	35.8634563309227	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGAGTGTTTATTCTGTGT	NA	False	NA	NA	False	TTTAAA	-16	NA	158466836	158481121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_158467437_158468246_158468477_158469976_158470147_158473382_158473601_158474191_158474375_158477226_158477347_158477927_158478068_158478587_158478721_158480552
ENSMUSG00000037761.17_16	chr2	+	2340	9	NIC	ENSMUSG00000037761.17	novel	2402	9	NA	NA	29	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	44.7960656754586	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGGAGTGTTTATTCT	NA	False	NA	NA	False	TTTAAA	-12	NA	158466836	158481117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_158467437_158468246_158468477_158469976_158470147_158473382_158473601_158474191_158474375_158477226_158477347_158477946_158478068_158478587_158478721_158480552
ENSMUSG00000037761.17_22	chr2	+	2946	8	FSM	ENSMUSG00000037761.17	ENSMUST00000142531.8	2970	8	23	1	23	-1	multi-exon	TRUE	canonical	0	0	junction_4	38.2691861978394	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGGAGTGTTTATTCT	NA	False	NA	NA	False	TTTAAA	-12	NA	158466830	158481117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_158467437_158468246_158468477_158469976_158470147_158473382_158473601_158474191_158474375_158477226_158478068_158478587_158478721_158480552
ENSMUSG00000037762.7_0	chr10	+	3519	6	FSM	ENSMUSG00000037762.7	ENSMUST00000046807.7	3756	6	209	28	209	-28	multi-exon	FALSE	canonical	3	72	junction_1	10.3846039885977	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAAATTATACTCGTT	NA	False	NA	-6	True	AATAAA	-2	NA	70081138	70121770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_70081209_70091789_70092023_70102921_70103066_70110755_70110852_70118118_70119028_70119703
ENSMUSG00000037762.7_1	chr10	+	3421	5	NIC	ENSMUSG00000037762.7	novel	3756	6	NA	NA	207	-32	intron_retention	FALSE	canonical	1	8	junction_3	30.9546038579078	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAAAATTATACT	NA	False	NA	-10	True	TTTAAA	-32	NA	70081136	70121766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_70081209_70091789_70092023_70102921_70103066_70118118_70119028_70119703
ENSMUSG00000037762.7_10	chr10	+	2380	2	ISM	ENSMUSG00000037762.7	ENSMUST00000155933.2	1469	4	15868	-1822	15868	-66	3prime_fragment	FALSE	canonical	3	72	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTAGAGCTATGATTT	6708	False	NA	-44	True	NA	NA	NA	70118676	70121732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_70119028_70119703
ENSMUSG00000037762.7_11	chr10	+	1155	1	ISM	ENSMUSG00000037762.7	ENSMUST00000046807.7	3756	6	39678	36	17799	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAAAATTA	8639	False	NA	-14	True	TTTAAA	-28	NA	70120607	70121762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_70120600_70121800
ENSMUSG00000037762.7_3	chr10	+	4183	5	ISM	ENSMUSG00000037762.7	ENSMUST00000046807.7	3756	6	207	42	207	-42	intron_retention	FALSE	canonical	3	72	junction_1	10.3531396204243	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAGCCAAATAAATAAATAA	NA	False	NA	-20	True	TTTAAA	-22	NA	70081136	70121756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_70081209_70091789_70092023_70102921_70103066_70110755_70110852_70118118
ENSMUSG00000037762.7_9	chr10	+	3397	5	ISM	ENSMUSG00000037762.7	ENSMUST00000046807.7	3756	6	10934	6	10934	-6	3prime_fragment	FALSE	canonical	3	72	junction_4	10.3531396204243	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCAAGTCTTGTTTTCG	NA	False	NA	16	True	AATAAA	-24	NA	70091863	70121792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_70092023_70102921_70103066_70110755_70110852_70118118_70119028_70119703
ENSMUSG00000037771.12_0	chr2	+	2553	2	FSM	ENSMUSG00000037771.12	ENSMUST00000045738.5	2797	2	236	8	236	-8	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGCGTCTCTGGCCTTCT	NA	False	NA	NA	False	AATAAA	-9	NA	158452922	158457660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_158453552_158455736
ENSMUSG00000037772.14_0	chr7	+	538	5	FSM	ENSMUSG00000037772.14	ENSMUST00000038675.7	692	5	147	7	-2	3	multi-exon	FALSE	canonical	3	973	junction_1	229.96847610053	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAGCTGGTGGACACT	NA	False	NA	-5	True	AATAAA	-13	NA	142086895	142094477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_142086932_142088741_142088865_142089806_142089890_142091003_142091078_142094255
ENSMUSG00000037773.15_0	chr2	-	2398	7	FSM	ENSMUSG00000037773.15	ENSMUST00000089581.11	3496	7	-8	1106	-5	170	multi-exon	FALSE	canonical	3	20	junction_6	6.9940450861191	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGTTCTTTGGGACTTTG	8049	False	NA	NA	False	AATAAA	-26	NA	130266206	130260708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331
ENSMUSG00000037773.15_1	chr2	-	3043	6	FSM	ENSMUSG00000037773.15	ENSMUST00000153663.8	3032	6	-10	-1	2	1	multi-exon	FALSE	canonical	3	20	junction_5	6.96850055607374	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTTTTTGGTTTGTT	8059	False	NA	NA	False	ATTAAA	-15	NA	130266196	130260143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264625_130264732_130264813_130265331
ENSMUSG00000037773.15_11	chr2	-	1750	8	FSM	ENSMUSG00000037773.15	ENSMUST00000110277.2	1689	8	-70	9	-56	2	multi-exon	FALSE	canonical	0	0	junction_7	13.0868371321129	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGACATTCCTGTGTCG	7578	False	NA	-6	True	AATAAA	-14	NA	130266677	130260887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331_130265473_130266412
ENSMUSG00000037773.15_15	chr2	-	2138	6	NIC	ENSMUSG00000037773.15	novel	3496	7	NA	NA	-2	167	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	14.3861044066836	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAACAGTTCTTTGGGACT	8067	False	NA	NA	False	AATAAA	-23	NA	130266188	130260711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264732_130264813_130265331
ENSMUSG00000037773.15_3	chr2	-	2084	8	NNC	ENSMUSG00000037773.15	novel	1689	8	NA	NA	-6	166	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_7	11.0250179323284	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAACAGTTCTTTGGGAC	8063	False	NA	NA	False	AATAAA	-22	NA	130266192	130260712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331_130265473_130265768
ENSMUSG00000037773.15_5	chr2	-	2713	1	NIC	ENSMUSG00000037773.15	novel	3402	5	NA	NA	3312	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTTTTTGGTTTGTT	NA	False	NA	NA	False	ATTAAA	-15	NA	130262856	130260143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_130260100_130262900
ENSMUSG00000037773.15_6	chr2	-	1711	2	ISM	ENSMUSG00000037773.15	ENSMUST00000153663.8	3032	6	4036	-1	4018	1	3prime_fragment	FALSE	canonical	3	40	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTTTTTGGTTTGTT	NA	False	NA	NA	False	ATTAAA	-15	NA	130262150	130260143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_130261254_130261549
ENSMUSG00000037773.15_9	chr2	-	2755	7	NNC	ENSMUSG00000037773.15	novel	3496	7	NA	NA	-3	-8	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	11.6045967903528	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAATTAAAAGCTTTTT	8066	False	NA	NA	False	ATTAAA	-6	NA	130266189	130260152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_130261254_130261549_130261629_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331
ENSMUSG00000037784.15_0	chr9	+	4102	17	NIC	ENSMUSG00000037784.15	novel	4350	17	NA	NA	-11	-2	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	5.75407464324195	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATGTCGTTCTTTGTTA	NA	False	NA	NA	False	AATATA	-19	NA	99511583	99551307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_99511723_99514689_99514802_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545578_99545770_99547767_99547908_99549691
ENSMUSG00000037784.15_1	chr9	+	3972	16	NIC	ENSMUSG00000037784.15	novel	3981	16	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	5.64348198268488	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTATGTCGTTCTTTGT	NA	False	NA	NA	False	AATATA	-17	NA	99511596	99551305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_99511723_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545581_99545770_99547767_99547908_99549691
ENSMUSG00000037784.15_10	chr9	+	3701	17	NIC	ENSMUSG00000037784.15	novel	4350	17	NA	NA	5	-283	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	5.64579489531811	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAGCCTCTTGTCCCCAA	NA	False	NA	NA	False	AATAAA	-14	NA	99511900	99550933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_99512016_99514689_99514802_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545581_99545770_99547767_99547908_99549691
ENSMUSG00000037784.15_11	chr9	+	3643	15	ISM	ENSMUSG00000037784.15	ENSMUST00000112885.9	4350	17	7978	1	2695	-1	3prime_fragment	FALSE	canonical	3	10	junction_12	4.18695739707224	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGTCGTTCTTTGTTAT	NA	False	NA	NA	False	AATATA	-20	NA	99519608	99551308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545578_99545770_99547767_99547908_99549691
ENSMUSG00000037784.15_15	chr9	+	160	1	FSM	ENSMUSG00000037784.15	ENSMUST00000190893.2	3470	1	366	2944	366	-195	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAATAAAAAATCCACCT	NA	False	NA	NA	False	NA	NA	NA	99532634	99532794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_99532600_99532800
ENSMUSG00000037784.15_16	chr9	+	3515	5	NIC	ENSMUSG00000037784.15	novel	3970	16	NA	NA	9536	-2	intron_retention	FALSE	canonical	3	15	junction_4	3.35410196624968	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATGTCGTTCTTTGTTA	NA	False	NA	NA	False	AATATA	-19	NA	99541804	99551307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_99543159_99544993_99545211_99545581_99545770_99547767_99547908_99549691
ENSMUSG00000037784.15_19	chr9	+	1058	1	ISM	ENSMUSG00000037784.15	ENSMUST00000078367.12	3981	16	38656	1	17982	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGTCGTTCTTTGTTAT	NA	False	NA	NA	False	AATATA	-20	NA	99550250	99551308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_99550200_99551300
ENSMUSG00000037784.15_3	chr9	+	4093	17	NIC	ENSMUSG00000037784.15	novel	4350	17	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	5.26634360823522	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGTCGTTCTTTGTTAT	NA	False	NA	NA	False	AATATA	-20	NA	99511590	99551308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_99511723_99514689_99514802_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545581_99545770_99547767_99547908_99549691
ENSMUSG00000037784.15_4	chr9	+	3963	16	FSM	ENSMUSG00000037784.15	ENSMUST00000078367.12	3981	16	17	1	17	-1	multi-exon	FALSE	canonical	2	2	junction_1	6.14997741639937	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGTCGTTCTTTGTTAT	NA	False	NA	NA	False	AATATA	-20	NA	99511611	99551308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_99511723_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545578_99545770_99547767_99547908_99549691
ENSMUSG00000037784.15_6	chr9	+	4345	17	FSM	ENSMUSG00000037784.15	ENSMUST00000112885.9	4350	17	-4	9	-4	-9	multi-exon	FALSE	canonical	1	2	junction_1	6.09302880347697	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTTTATTATGTCGTTC	NA	False	NA	NA	False	AATATA	-12	NA	99511626	99551300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_99512016_99514689_99514802_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545578_99545770_99547767_99547908_99549691
ENSMUSG00000037787.15_0	chr12	+	986	5	FSM	ENSMUSG00000037787.15	ENSMUST00000040519.12	1065	5	26	53	1	-53	multi-exon	FALSE	canonical	3	492	junction_3	10.0343161201947	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	1567	False	NA	NA	False	NA	NA	NA	111679720	111700601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111700100
ENSMUSG00000037788.15_0	chr6	-	2885	5	FSM	ENSMUSG00000037788.15	ENSMUST00000114297.5	2919	5	34	0	11	0	multi-exon	FALSE	canonical	3	18	junction_1	0.866025403784439	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCTGTGATTTTTTTGG	NA	False	NA	-2	True	AATAAA	-14	NA	57802110	57729249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_57731662_57739419_57739557_57751695_57751774_57766961_57767021_57801911
ENSMUSG00000037788.15_5	chr6	-	3044	6	FSM	ENSMUSG00000037788.15	ENSMUST00000204878.3	769	6	21	-2296	7	-2	multi-exon	FALSE	canonical	2	6	junction_5	6.01331855134916	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATATGCTGTGATTTTTTT	NA	False	NA	-4	True	AATAAA	-12	NA	57802114	57729251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_57731662_57739419_57739557_57751695_57751774_57766961_57767021_57785520_57785678_57801911
ENSMUSG00000037791.16_0	chr11	+	4449	15	FSM	ENSMUSG00000037791.16	ENSMUST00000049167.14	4410	15	-50	11	-2	-11	multi-exon	FALSE	canonical	3	95	junction_1	13.672742137224	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCAAATTATGTTTTCTG	NA	False	NA	7	True	TATAAA	-11	NA	77873577	77921354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710_77916855_77918145_77918245_77919052_77919136_77919668_77919808_77920142
ENSMUSG00000037791.16_1	chr11	+	3070	11	ISM	ENSMUSG00000037791.16	ENSMUST00000049167.14	4410	15	-51	4358	-3	-1	5prime_fragment	FALSE	canonical	3	95	junction_1	13.3356664625357	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCAGTGTGAACAAGATAAA	NA	False	NA	NA	False	AATAAA	-22	NA	77873576	77917007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710
ENSMUSG00000037791.16_13	chr11	+	4805	14	ISM	ENSMUSG00000037791.16	ENSMUST00000049167.14	4410	15	-68	8	-20	-8	intron_retention	FALSE	canonical	3	95	junction_1	14.1258083499126	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATTATGTTTTCTGCCT	NA	False	NA	10	True	TATAAA	-14	NA	77873559	77921357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710_77916855_77918145_77918245_77919052_77919136_77919668
ENSMUSG00000037791.16_4	chr11	+	4148	15	NIC	ENSMUSG00000037791.16	novel	4410	15	NA	NA	-18	-476	intron_retention	FALSE	canonical	3	11	junction_9	32.5263629339999	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCTATACAATATCATT	NA	False	NA	19	True	ATTAAA	-27	NA	77873561	77920889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915638_77915913_77916710_77916855_77918145_77918245_77919052_77919136_77919668_77919808_77920142
ENSMUSG00000037795.15_10	chr5	+	9190	21	NIC	ENSMUSG00000037795.15	novel	5308	18	NA	NA	-16	-4	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	30.7602015598078	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTCCAGTGTGAAGAAAT	NA	False	NA	14	True	AATAAA	-12	NA	65921446	65987447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_65921589_65928729_65928785_65932927_65933007_65941652_65941720_65943448_65943705_65945395_65945485_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
ENSMUSG00000037795.15_21	chr5	+	8087	15	ISM	ENSMUSG00000037795.15	ENSMUST00000201489.4	9055	20	26909	7	7482	-7	3prime_fragment	FALSE	canonical	3	66	junction_1	14.8585164200226	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACAGTCCAGTGTGAAGA	NA	False	NA	11	True	AATAAA	-9	NA	65947772	65987444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
ENSMUSG00000037795.15_24	chr5	+	5655	10	ISM	ENSMUSG00000037795.15	ENSMUST00000201489.4	9055	20	43925	4	-2285	-4	3prime_fragment	FALSE	canonical	3	78	junction_3	12.7366487830285	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTCCAGTGTGAAGAAAT	9088	False	NA	14	True	AATAAA	-12	NA	65964788	65987447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
ENSMUSG00000037795.15_28	chr5	+	4553	9	ISM	ENSMUSG00000037795.15	ENSMUST00000201489.4	9055	20	45635	7	-575	-7	3prime_fragment	FALSE	canonical	3	78	junction_2	12.8233186032322	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACAGTCCAGTGTGAAGA	NA	False	NA	11	True	AATAAA	-9	NA	65966498	65987444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
ENSMUSG00000037795.15_32	chr5	+	3967	4	ISM	ENSMUSG00000037795.15	ENSMUST00000201489.4	9055	20	56761	7	-4960	-7	3prime_fragment	FALSE	canonical	3	99	junction_2	4.18993502999218	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACAGTCCAGTGTGAAGA	1641	False	NA	11	True	AATAAA	-9	NA	65977624	65987444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65977802_65979150_65979320_65982614_65982739_65983947
ENSMUSG00000037795.15_33	chr5	+	3679	3	ISM	ENSMUSG00000037795.15	ENSMUST00000201489.4	9055	20	58398	7	-3323	-7	3prime_fragment	FALSE	canonical	3	99	junction_1	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACAGTCCAGTGTGAAGA	3278	False	NA	11	True	AATAAA	-9	NA	65979261	65987444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65979320_65982614_65982739_65983947
ENSMUSG00000037795.15_34	chr5	+	2241	1	ISM	ENSMUSG00000037795.15	ENSMUST00000201489.4	9055	20	64343	4	2622	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTCCAGTGTGAAGAAAT	9223	False	NA	14	True	AATAAA	-12	NA	65985206	65987447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65985200_65987400
ENSMUSG00000037795.15_5	chr5	+	9165	20	NIC	ENSMUSG00000037795.15	novel	5308	18	NA	NA	61	-4	combination_of_known_splicesites	FALSE	canonical	3	26	junction_4	25.0437843732546	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTCCAGTGTGAAGAAAT	NA	False	NA	14	True	AATAAA	-12	NA	65921382	65987447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_65921589_65928729_65928785_65932927_65933007_65941652_65941720_65943448_65943705_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
ENSMUSG00000037795.15_6	chr5	+	8789	18	FSM	ENSMUSG00000037795.15	ENSMUST00000087264.4	5308	18	-30	-3451	-30	-7	multi-exon	FALSE	canonical	3	26	junction_3	21.723490387184	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACAGTCCAGTGTGAAGA	NA	False	NA	11	True	AATAAA	-9	NA	65921432	65987444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_65921589_65928729_65928785_65932927_65933007_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
ENSMUSG00000037805.16_1	chr17	+	947	6	FSM	ENSMUSG00000037805.16	ENSMUST00000129935.8	949	6	-1	3	0	1	multi-exon	FALSE	canonical	3	728	junction_3	2914.49848859113	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCCTTGGTGTGCCTGTG	NA	False	NA	-3	True	AATAAA	-16	NA	28547556	28550003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28547593_28547784_28547860_28547940_28548255_28548347_28548497_28549498_28549672_28549803
ENSMUSG00000037805.16_2	chr17	+	712	6	FSM	ENSMUSG00000037805.16	ENSMUST00000042334.16	830	6	112	6	0	0	multi-exon	FALSE	canonical	3	5482	junction_4	1458.64553610533	1838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTTGGTGTGCCTG	NA	False	NA	-5	True	AATAAA	-14	NA	28547556	28550001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUSG00000037805.16_3	chr17	+	1471	2	FSM	ENSMUSG00000037805.16	ENSMUST00000141049.2	1618	2	151	-4	151	-1	multi-exon	FALSE	canonical	3	8416	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGCCTGTGAT	NA	False	NA	-1	True	AATAAA	-18	NA	28548402	28550005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28549672_28549803
ENSMUSG00000037805.16_7	chr17	+	834	5	FSM	ENSMUSG00000037805.16	ENSMUST00000152665.3	901	5	67	0	6	0	multi-exon	FALSE	canonical	3	5482	junction_3	1346.05653205948	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTTGGTGTGCCTG	NA	False	NA	-5	True	AATAAA	-14	NA	28547626	28550001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUSG00000037808.14_21	chr9	+	3706	11	FSM	ENSMUSG00000037808.14	ENSMUST00000156680.2	3760	11	28	26	9	-26	multi-exon	FALSE	canonical	2	6	junction_8	54.6652540467892	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTTGTGTTGATTCTG	NA	False	NA	NA	False	AATAAA	-9	NA	13739039	13757811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13747954_13748013_13748132_13748269_13750935_13751038_13755324
ENSMUSG00000037808.14_31	chr9	+	1966	1	ISM	ENSMUSG00000037808.14	ENSMUST00000059579.12	3702	10	16847	13	7686	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCTGCTGTAATGAATGA	4439	False	NA	NA	False	AATAAA	-22	NA	13755858	13757824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_13755900_13757800
ENSMUSG00000037808.14_4	chr9	+	3656	10	FSM	ENSMUSG00000037808.14	ENSMUST00000059579.12	3702	10	27	19	8	-19	multi-exon	FALSE	canonical	3	110	junction_7	15.6165470962654	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGATTCTGCTGTAAT	NA	False	NA	NA	False	AATAAA	-16	NA	13739038	13757818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13748132_13748269_13750935_13751038_13755324
ENSMUSG00000037808.14_9	chr9	+	3644	10	NNC	ENSMUSG00000037808.14	novel	3702	10	NA	NA	10	-26	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_7	37.2677996249965	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTTGTGTTGATTCTG	NA	False	NA	NA	False	AATAAA	-9	NA	13739040	13757811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13748135_13748269_13750935_13751038_13755324
ENSMUSG00000037813.14_1	chr2	-	1988	10	NNC	ENSMUSG00000037813.14	novel	3910	14	NA	NA	17305	3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	2.51415744421884	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTTGTTTTTGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	158053837	158037667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_158038574_158042073_158042287_158042880_158043004_158044992_158045132_158046579_158046729_158047620_158047720_158050332_158050450_158052058_158052143_158053539_158053634_158053773
ENSMUSG00000037815.8_0	chr18	+	3669	18	FSM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	51	13	-3	-13	multi-exon	FALSE	canonical	3	1584	junction_14	159.493141807844	4171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACCAAGTCTAAGAAGC	NA	False	NA	20	True	AATAAA	-8	NA	35251962	35387819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
ENSMUSG00000037816.11_0	chr13	+	1897	9	NIC	ENSMUSG00000037816.11	novel	1798	10	NA	NA	-30	-1	intron_retention	FALSE	canonical	3	6	junction_7	6.38357266740185	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGCTGTAGAGACACAT	NA	False	NA	NA	False	ATTAAA	-14	NA	50571869	50587798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_50572024_50573875_50573914_50577237_50577399_50577787_50577907_50579592_50579803_50580657_50580817_50585575_50585787_50586211_50586592_50587333
ENSMUSG00000037816.11_1	chr13	+	1782	10	FSM	ENSMUSG00000037816.11	ENSMUST00000046974.5	1798	10	19	-3	2	3	multi-exon	FALSE	canonical	3	14	junction_8	4.29469957557504	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGACACATTCCTGCATGA	NA	False	NA	NA	False	ATTAAA	-24	NA	50571918	50587808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_50572024_50573875_50573914_50577237_50577399_50577787_50577907_50579592_50579803_50580657_50580817_50585575_50585787_50586206_50586383_50586463_50586592_50587333
ENSMUSG00000037818.17_0	chr3	+	4329	13	FSM	ENSMUSG00000037818.17	ENSMUST00000108077.10	3277	13	-59	-993	0	-6	multi-exon	FALSE	non_canonical	0	0	junction_6	7.57554545157567	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAGTATTTGCTTTGTGG	NA	False	NA	NA	False	AATAAA	-11	NA	40848697	40892565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_40848879_40859320_40859429_40860306_40860392_40864937_40865039_40871120_40871200_40871306_40871392_40873812_40873841_40877847_40877987_40884571_40884662_40885315_40885418_40887958_40888338_40889301_40889465_40889776
ENSMUSG00000037818.17_10	chr3	+	1176	1	NIC	ENSMUSG00000037818.17	novel	4455	13	NA	NA	4589	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGGGTTCTGTCAGACA	NA	False	NA	NA	False	AATAAA	-16	NA	40889568	40890744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_40889600_40890700
ENSMUSG00000037818.17_3	chr3	+	2773	7	ISM	ENSMUSG00000037818.17	ENSMUST00000204496.3	4144	12	-6	19090	-6	-2	5prime_fragment	FALSE	canonical	2	4	junction_3	10.0940026198178	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40848705	40873481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_40848879_40859320_40859429_40860306_40860392_40860601_40860654_40864937_40865039_40871120_40871200_40871306
ENSMUSG00000037818.17_4	chr3	+	4333	14	NIC	ENSMUSG00000037818.17	novel	3277	13	NA	NA	-5	-45	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	9.23909880592053	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCCAAATTTTATATTT	NA	False	NA	NA	False	ATTAAA	-29	NA	40848706	40892526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_40848879_40859320_40859429_40860306_40860392_40860601_40860654_40864937_40865039_40871120_40871200_40871306_40871392_40873812_40873841_40877847_40877987_40884571_40884662_40885315_40885418_40887958_40888338_40889301_40889465_40889776
ENSMUSG00000037820.16_0	chr2	-	3521	13	FSM	ENSMUSG00000037820.16	ENSMUST00000103122.10	3596	13	70	5	0	-5	multi-exon	FALSE	canonical	3	151	junction_8	19.1534374634598	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACAAGGTCTGCCTTGT	8876	False	NA	NA	False	AATAAA	-17	NA	157988286	157958326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_157959872_157960766_157960904_157962044_157962206_157966040_157966311_157969031_157969275_157970558_157970663_157971242_157971379_157973250_157973429_157974348_157974478_157976170_157976290_157980626_157980870_157984914_157985095_157988210
ENSMUSG00000037820.16_5	chr2	-	2717	8	ISM	ENSMUSG00000037820.16	ENSMUST00000103122.10	3596	13	14983	7	8283	-7	3prime_fragment	FALSE	canonical	3	175	junction_1	18.986568829527	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAAACAAGGTCTGCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	157973373	157958328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_157959872_157960766_157960904_157962044_157962206_157966040_157966311_157969031_157969275_157970558_157970663_157971242_157971379_157973250
ENSMUSG00000037822.13_0	chr5	-	1076	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	518	2966	-1	-6	multi-exon	FALSE	canonical	3	378	junction_4	15.1410039297267	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAGTGGTTGGTTTAGA	NA	False	NA	NA	False	AATAAA	-12	NA	65650225	65607152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
ENSMUSG00000037822.13_15	chr5	-	4763	1	FSM	ENSMUSG00000037822.13	ENSMUST00000198981.3	3456	1	577	-1884	48	1884	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65650166	65645403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_65645400_65650200
ENSMUSG00000037824.7_1	chr14	-	2457	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	-58	76	-58	-74	multi-exon	FALSE	canonical	3	610	junction_1	26.6868413267663	1200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCTGTTGTTTGGGTCTT	NA	False	NA	-27	True	AATATA	-11	NA	40688822	40628477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
ENSMUSG00000037824.7_10	chr14	-	2430	8	NIC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	-76	-21	combination_of_known_splicesites	TRUE	canonical	2	11	junction_7	223.728607459838	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAACAAAAAAGCATTA	NA	False	NA	26	True	NA	NA	NA	40688840	40628424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40688732
ENSMUSG00000037824.7_4	chr14	-	1298	1	ISM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	58989	76	26498	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCTGTTGTTTGGGTCTT	NA	False	NA	-27	True	AATATA	-11	NA	40629775	40628477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_40628500_40629800
ENSMUSG00000037826.6_0	chr6	-	3849	6	ISM	ENSMUSG00000037826.6	ENSMUST00000042766.6	5560	7	10240	1496	-9579	-1496	3prime_fragment	FALSE	canonical	3	10	junction_2	2.57681974534503	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTTGTTTCTGTTTTGTG	NA	False	NA	NA	False	ATTAAA	-20	NA	57502171	57484982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_57487835_57490926_57491062_57491958_57492104_57492577_57492744_57499733_57499835_57501721
ENSMUSG00000037826.6_2	chr6	-	3163	1	Genic_Genomic	ENSMUSG00000037826.6	novel	NA	NA	NA	NA	5945	2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAATTCCAGTTCTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	57486647	57483484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_57483500_57486600
ENSMUSG00000037826.6_3	chr6	-	3529	7	FSM	ENSMUSG00000037826.6	ENSMUST00000042766.6	5560	7	-63	2094	-21	-2094	multi-exon	FALSE	canonical	3	10	junction_2	2.3629078131263	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTAAAATTAAATTAAATTAA	NA	False	NA	NA	False	NA	NA	NA	57512474	57485580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_57487835_57490926_57491062_57491958_57492104_57492577_57492744_57499733_57499835_57501721_57502240_57512264
ENSMUSG00000037826.6_5	chr6	-	2351	1	ISM	ENSMUSG00000037826.6	ENSMUST00000042766.6	5560	7	25056	1518	5237	-1518	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGACAACGTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	57487355	57485004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_57485000_57487400
ENSMUSG00000037826.6_6	chr6	-	4273	2	ISM	ENSMUSG00000037826.6	ENSMUST00000042766.6	5560	7	21420	140	1601	-140	3prime_fragment	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAAGTACTACTTGGTAT	NA	False	NA	NA	False	NA	NA	NA	57490991	57483626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_57487835_57490926
ENSMUSG00000037827.6_0	chr6	+	2216	1	FSM	ENSMUSG00000037827.6	ENSMUST00000036712.6	1479	1	-51	-686	-51	686	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAGTAGAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	128621824	128624040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_128621800_128624000
ENSMUSG00000037833.15_2	chr14	-	5925	9	NNC	ENSMUSG00000037833.15	novel	1597	8	NA	NA	-747	2261	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_8	6.40190401365094	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGGAATGGCCTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	40615970	40533484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_40537918_40542571_40542793_40562181_40562307_40564330_40564548_40582548_40582697_40594486_40594635_40596036_40596197_40614738_40614927_40615685
ENSMUSG00000037833.15_20	chr14	-	5304	7	ISM	ENSMUSG00000037833.15	ENSMUST00000096000.4	1597	8	19173	-4338	19173	2259	3prime_fragment	FALSE	canonical	3	14	junction_2	6.11010092660779	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATAAAGGAATGGCCTC	NA	False	NA	NA	False	AATAAA	-12	NA	40596050	40533486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_40537918_40542571_40542793_40562181_40562307_40564330_40564548_40582548_40582697_40594486_40594635_40596036
ENSMUSG00000037833.15_3	chr14	-	5066	5	NIC	ENSMUSG00000037833.15	novel	1597	8	NA	NA	-19294	2261	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	7.39932429347437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGGAATGGCCTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	40594556	40533484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_40537918_40542571_40542793_40562181_40562307_40564330_40564548_40594486
ENSMUSG00000037833.15_8	chr14	-	5763	8	FSM	ENSMUSG00000037833.15	ENSMUST00000096000.4	1597	8	172	-4338	172	2259	multi-exon	FALSE	canonical	3	14	junction_2	5.69998209807429	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATAAAGGAATGGCCTC	NA	False	NA	NA	False	AATAAA	-12	NA	40615051	40533486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_40537918_40542571_40542793_40562181_40562307_40564330_40564548_40582548_40582697_40594486_40594635_40596036_40596197_40614738
ENSMUSG00000037833.15_9	chr14	-	5246	6	ISM	ENSMUSG00000037833.15	ENSMUST00000096000.4	1597	8	20635	-4340	-19326	2261	3prime_fragment	FALSE	canonical	3	14	junction_2	5.42586398650021	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGGAATGGCCTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	40594588	40533484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_40537918_40542571_40542793_40562181_40562307_40564330_40564548_40582548_40582697_40594486
ENSMUSG00000037843.7_0	chr2	+	1379	4	FSM	ENSMUSG00000037843.7	ENSMUST00000109523.2	1363	4	-18	2	-18	-2	multi-exon	FALSE	canonical	3	14	junction_1	2.49443825784929	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCGGGCAGTGCCTTGCT	NA	False	NA	3	True	AATAAA	-13	NA	157756554	157786637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_157756852_157777244_157777415_157779110_157779162_157785776
ENSMUSG00000037843.7_1	chr2	+	1331	3	NIC	ENSMUSG00000037843.7	novel	1363	4	NA	NA	-26	-7	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAACCCGGGCAGTGCC	NA	False	NA	-2	True	AATAAA	-8	NA	157756546	157786632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_157756852_157777244_157777415_157785776
ENSMUSG00000037843.7_3	chr2	+	3288	3	NIC	ENSMUSG00000037843.7	novel	1363	4	NA	NA	-243	-14	intron_retention	FALSE	canonical	3	14	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTTTAAACCAACCCGGG	NA	False	NA	-9	True	AATAAA	-1	NA	157756329	157786625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_157756852_157777244_157779162_157785776
ENSMUSG00000037845.15_0	chr9	+	3324	2	NIC	ENSMUSG00000037845.15	novel	2527	3	NA	NA	3	-426	intron_retention	FALSE	canonical	3	73	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTGCCTATGGTATTTC	NA	False	NA	NA	False	TATAAA	-17	NA	50679553	50683517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_50682091_50682730
ENSMUSG00000037845.15_1	chr9	+	1970	5	FSM	ENSMUSG00000037845.15	ENSMUST00000042391.13	2658	5	20	668	5	11	multi-exon	FALSE	canonical	3	72	junction_2	7.15454401062709	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTGTGGTTTTGTTTTG	NA	False	NA	13	True	AAAAAG	-28	NA	50679555	50683980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_50679756_50679987_50680145_50681409_50681614_50681931_50682091_50682730
ENSMUSG00000037845.15_2	chr9	+	2296	4	NIC	ENSMUSG00000037845.15	novel	2658	5	NA	NA	-3	11	intron_retention	TRUE	canonical	3	72	junction_2	2.62466929133727	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTGTGGTTTTGTTTTG	NA	False	NA	13	True	AAAAAG	-28	NA	50679547	50683980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_50679756_50679987_50680145_50681409_50682091_50682730
ENSMUSG00000037845.15_3	chr9	+	3966	1	NIC	ENSMUSG00000037845.15	novel	2658	5	NA	NA	-3	-430	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATGCTTGCCTATGGTA	NA	False	NA	NA	False	TATAAA	-13	NA	50679547	50683513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_50679500_50683500
ENSMUSG00000037845.15_4	chr9	+	2509	3	FSM	ENSMUSG00000037845.15	ENSMUST00000176619.2	2527	3	18	0	5	0	multi-exon	FALSE	canonical	3	72	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTTCTGGACTCTTGTG	NA	False	NA	2	True	AAAAAG	-17	NA	50679555	50683969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_50680145_50681409_50682091_50682730
ENSMUSG00000037845.15_8	chr9	+	1862	4	ISM	ENSMUSG00000037845.15	ENSMUST00000042391.13	2658	5	349	679	140	0	3prime_fragment	FALSE	canonical	3	72	junction_1	8.25967446224258	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTTCTGGACTCTTGTG	NA	False	NA	2	True	AAAAAG	-17	NA	50679884	50683969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_50680145_50681409_50681614_50681931_50682091_50682730
ENSMUSG00000037846.19_2	chr10	+	2466	12	FSM	ENSMUSG00000037846.19	ENSMUST00000117086.2	2246	12	-10	-210	7	210	multi-exon	FALSE	canonical	3	52	junction_10	13.4870614459296	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGGAATTTGTAATCTGC	NA	False	NA	18	True	ATTAAA	-15	NA	67815534	67878338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_67815643_67823136_67823334_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347_67862480_67871618_67871782_67875860_67875969_67877208
ENSMUSG00000037846.19_3	chr10	+	2475	9	ISM	ENSMUSG00000037846.19	ENSMUST00000117086.2	2246	12	-11	14240	6	-14240	5prime_fragment	FALSE	canonical	3	56	junction_6	12.7027310055751	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGTTTAAAGAGTT	NA	False	NA	NA	False	GATAAA	-10	NA	67815533	67863888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_67815643_67823136_67823334_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347
ENSMUSG00000037846.19_4	chr10	+	2456	12	FSM	ENSMUSG00000037846.19	ENSMUST00000118160.8	3970	12	154	1360	9	210	multi-exon	FALSE	canonical	3	32	junction_2	17.4900207674628	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGGAATTTGTAATCTGC	NA	False	NA	18	True	ATTAAA	-15	NA	67815553	67878338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_67815643_67823136_67823343_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347_67862480_67871618_67871782_67875860_67875969_67877208
ENSMUSG00000037847.15_0	chr19	+	1679	9	FSM	ENSMUSG00000037847.15	ENSMUST00000237347.2	1940	9	8	253	-1	-19	multi-exon	FALSE	canonical	3	68	junction_8	10.6880482315528	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTATCTAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	18609321	18629539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599
ENSMUSG00000037847.15_11	chr19	+	1114	3	ISM	ENSMUSG00000037847.15	ENSMUST00000042392.14	1357	9	10222	-229	10174	-38	3prime_fragment	FALSE	canonical	3	68	junction_2	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAATAAAAGAGAAAGATG	NA	False	NA	NA	False	NA	NA	NA	18619535	18629520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_18619645_18622418_18622503_18628599
ENSMUSG00000037847.15_8	chr19	+	1622	10	NNC	ENSMUSG00000037847.15	novel	1768	10	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	32.8389260136259	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTGTGTGTCTCTGTG	NA	False	NA	NA	False	CATAAA	-17	NA	18609315	18629292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18625715_18625900_18628599
ENSMUSG00000037851.14_0	chr13	+	4366	34	FSM	ENSMUSG00000037851.14	ENSMUST00000165316.8	4426	34	52	8	22	-8	multi-exon	FALSE	canonical	1	598	junction_17	241.366305222171	3195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACTGTGTTGGAAGTAG	NA	False	NA	22	True	ATTAAA	-23	NA	49835627	49887735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
ENSMUSG00000037851.14_153	chr13	+	4316	33	FSM	ENSMUSG00000037851.14	ENSMUST00000164260.8	3789	33	-9	-518	-9	-8	multi-exon	FALSE	canonical	1	598	junction_16	240.046406646194	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACTGTGTTGGAAGTAG	NA	False	NA	22	True	ATTAAA	-23	NA	49840859	49887735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
ENSMUSG00000037851.14_95	chr13	+	4408	34	NIC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	24	-8	combination_of_known_junctions	FALSE	canonical	1	120	junction_1	357.515439185776	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACTGTGTTGGAAGTAG	NA	False	NA	22	True	ATTAAA	-23	NA	49835690	49887735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
ENSMUSG00000037852.9_0	chr8	-	2089	9	FSM	ENSMUSG00000037852.9	ENSMUST00000048967.9	2117	9	11	17	11	-17	multi-exon	FALSE	canonical	3	35	junction_4	3.34477204006491	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAAAAAAATCC	NA	False	NA	NA	False	AATAAA	-3	NA	65146077	65045592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_65046256_65047930_65048050_65050493_65050594_65059636_65059777_65062081_65062265_65064407_65064526_65070571_65070740_65072384_65072582_65145676
ENSMUSG00000037855.16_0	chr10	-	4235	5	FSM	ENSMUSG00000037855.16	ENSMUST00000064656.8	4259	5	19	5	19	-5	multi-exon	FALSE	canonical	3	8	junction_3	4.58257569495584	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTTTGGTCTGTTCCT	NA	False	NA	-4	True	AATAAA	-15	NA	67748473	67721937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_67724922_67725782_67725821_67733263_67733445_67745030_67745790_67748200
ENSMUSG00000037855.16_2	chr10	-	3255	4	ISM	ENSMUSG00000037855.16	ENSMUST00000064656.8	4259	5	3408	7	3181	-7	3prime_fragment	FALSE	canonical	3	8	junction_3	2.49443825784929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAACACTTTGGTCTGTTC	NA	False	NA	-6	True	AATAAA	-13	NA	67745084	67721939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_67724922_67725782_67725821_67733263_67733445_67745030
ENSMUSG00000037857.17_1	chr11	+	4361	4	FSM	ENSMUSG00000037857.17	ENSMUST00000100802.11	5158	4	-8	805	-8	-805	multi-exon	FALSE	canonical	3	165	junction_1	19.0146142626022	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTGTGTTTTGTGTTC	NA	False	NA	1	True	TTTAAA	-43	NA	77576972	77602762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77577334_77582367_77584081_77596334_77596368_77600508
ENSMUSG00000037857.17_12	chr11	+	3376	3	ISM	ENSMUSG00000037857.17	ENSMUST00000100802.11	5158	4	6061	755	4615	-755	3prime_fragment	FALSE	canonical	3	202	junction_1	3	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTTAAAAAAAAAATCT	NA	False	NA	51	True	AATAAA	-10	NA	77583041	77602812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_77584081_77596334_77596368_77600508
ENSMUSG00000037857.17_16	chr11	+	2287	1	ISM	ENSMUSG00000037857.17	ENSMUST00000100802.11	5158	4	24293	7	22847	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCATCTGTTTTCTGAT	NA	False	NA	10	True	ATTAAA	-11	NA	77601273	77603560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_77601300_77603600
ENSMUSG00000037860.16_13	chr1	+	3482	8	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	4	-328	intron_retention	FALSE	canonical	3	62	junction_1	23.1499107416625	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTTGAGATATCATTCT	NA	False	NA	9	True	NA	NA	NA	173248167	173293270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_173248253_173255324_173255465_173280393_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_2	chr1	+	2682	10	ISM	ENSMUSG00000037860.16	ENSMUST00000147604.8	2839	12	68233	336	-84	-328	3prime_fragment	FALSE	canonical	3	10	junction_1	34.5450144694044	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTTGAGATATCATTCT	NA	False	NA	9	True	NA	NA	NA	173246677	173293270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_173247122_173248136_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_20	chr1	+	2608	5	FSM	ENSMUSG00000037860.16	ENSMUST00000166137.3	2079	5	-857	328	-474	-328	multi-exon	FALSE	canonical	3	92	junction_1	17.7341478509682	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTTGAGATATCATTCT	NA	False	NA	9	True	NA	NA	NA	173282062	173293270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_23	chr1	+	1215	3	ISM	ENSMUSG00000037860.16	ENSMUST00000166137.3	2079	5	6678	325	6544	-325	3prime_fragment	FALSE	canonical	3	120	junction_2	8.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAGATATCATTCTTCT	NA	False	NA	12	True	NA	NA	NA	173289597	173293273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_24	chr1	+	788	2	ISM	ENSMUSG00000037860.16	ENSMUST00000166137.3	2079	5	8637	331	8503	-331	3prime_fragment	FALSE	canonical	3	120	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAGGTTTGAGATATCAT	NA	False	NA	6	True	NA	NA	NA	173291556	173293267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_173291614_173292536
ENSMUSG00000037860.16_4	chr1	+	2469	9	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	-11	-328	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	39.9591588374931	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTTGAGATATCATTCT	NA	False	NA	9	True	NA	NA	NA	173246750	173293270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_173247122_173248136_173248253_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_5	chr1	+	2566	9	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	-84	-328	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	38.1966539764938	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTTGAGATATCATTCT	NA	False	NA	9	True	NA	NA	NA	173246677	173293270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_173247122_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_7	chr1	+	2206	9	ISM	ENSMUSG00000037860.16	ENSMUST00000147604.8	2839	12	69724	336	5	-328	3prime_fragment	FALSE	canonical	3	62	junction_1	21.7884000100971	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTTGAGATATCATTCT	NA	False	NA	9	True	NA	NA	NA	173248168	173293270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_8	chr1	+	2066	8	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	5	-328	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	29.5379382475888	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTTGAGATATCATTCT	NA	False	NA	9	True	NA	NA	NA	173248168	173293270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_173248253_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_9	chr1	+	4505	7	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	1	-328	intron_retention	FALSE	canonical	3	62	junction_1	24.8288586572606	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTTGAGATATCATTCT	NA	False	NA	9	True	NA	NA	NA	173248164	173293270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_173248253_173255324_173255465_173280393_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037876.18_0	chr10	+	8439	26	NIC	ENSMUSG00000037876.18	novel	2015	12	NA	NA	-5	-5	combination_of_known_junctions	FALSE	canonical	3	46	junction_5	34.4406736287199	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAAGCTGGATGTTACA	NA	False	NA	8	True	ATTAAA	-9	NA	66932265	67092092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_66932498_66993685_66993851_67025514_67025629_67051048_67051155_67052761_67052887_67053816_67053961_67054055_67054249_67054732_67056415_67059787_67059961_67060515_67062699_67065626_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
ENSMUSG00000037876.18_1	chr10	+	8340	25	NIC	ENSMUSG00000037876.18	novel	2015	12	NA	NA	-24	-6	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	36.3191629477088	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGAAGCTGGATGTTAC	NA	False	NA	7	True	ATTAAA	-8	NA	66932159	67092091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_66932498_66993685_66993851_67025514_67025629_67051048_67051155_67053895_67053961_67054055_67054249_67054732_67056415_67059787_67059961_67060515_67062699_67065626_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
ENSMUSG00000037876.18_10	chr10	+	8357	26	NIC	ENSMUSG00000037876.18	novel	2015	12	NA	NA	-13	-16	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	38.2079363483557	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGACTTTATCAAGAAGC	NA	False	NA	-3	True	NA	NA	NA	66932257	67092081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_66932498_66993685_66993851_67025514_67025629_67051048_67051155_67052761_67052887_67053895_67053961_67054055_67054249_67054732_67056415_67059787_67059961_67060515_67062699_67065626_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
ENSMUSG00000037876.18_21	chr10	+	6473	19	ISM	ENSMUSG00000037876.18	ENSMUST00000173689.8	8609	25	34090	6	2100	-6	3prime_fragment	FALSE	canonical	3	73	junction_1	19.885241751263	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGAAGCTGGATGTTAC	NA	False	NA	7	True	ATTAAA	-8	NA	67055618	67092091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_67056415_67059787_67059961_67060515_67062699_67065626_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
ENSMUSG00000037876.18_24	chr10	+	4158	17	ISM	ENSMUSG00000037876.18	ENSMUST00000173689.8	8609	25	40336	3	8346	-3	3prime_fragment	FALSE	canonical	3	93	junction_1	16.2821796759525	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCTGGATGTTACAGT	NA	False	NA	10	True	ATTAAA	-11	NA	67061864	67092094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_67062699_67065626_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
ENSMUSG00000037876.18_25	chr10	+	3286	16	ISM	ENSMUSG00000037876.18	ENSMUST00000173689.8	8609	25	44136	3	-8262	-3	3prime_fragment	FALSE	canonical	3	99	junction_6	15.3051915665531	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCTGGATGTTACAGT	NA	False	NA	10	True	ATTAAA	-11	NA	67065664	67092094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
ENSMUSG00000037876.18_27	chr10	+	2822	14	ISM	ENSMUSG00000037876.18	ENSMUST00000173689.8	8609	25	47703	6	-4695	-6	3prime_fragment	FALSE	canonical	3	99	junction_4	16.1435864855175	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGAAGCTGGATGTTAC	NA	False	NA	7	True	ATTAAA	-8	NA	67069231	67092091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
ENSMUSG00000037876.18_5	chr10	+	8308	25	NIC	ENSMUSG00000037876.18	novel	2015	12	NA	NA	1	-5	combination_of_known_splicesites	FALSE	canonical	3	20	junction_4	35.1364157012825	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAAGCTGGATGTTACA	NA	False	NA	8	True	ATTAAA	-9	NA	66932271	67092092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_66932498_66993685_66993851_67025514_67025629_67051048_67051155_67053816_67053961_67054055_67054249_67054732_67056415_67059787_67059961_67060515_67062699_67065626_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
ENSMUSG00000037885.19_0	chr2	+	6209	4	FSM	ENSMUSG00000037885.19	ENSMUST00000165413.9	2882	4	-38	-3289	-38	-24	multi-exon	FALSE	canonical	3	112	junction_3	11.4406682011537	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGCCATACGCTATTTG	6193	False	NA	10	True	AATAAA	-17	NA	129642398	129674183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_129642767_129643323_129643925_129652407_129653158_129669693
ENSMUSG00000037885.19_1	chr2	+	5471	3	FSM	ENSMUSG00000037885.19	ENSMUST00000166282.3	5445	3	-38	12	-38	-12	multi-exon	FALSE	canonical	3	29	junction_2	55	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATTTGAAAATGAGTGTT	6193	False	NA	22	True	AATAAA	-29	NA	129642398	129674195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_129642767_129643323_129643925_129669693
ENSMUSG00000037885.19_5	chr2	+	5696	3	ISM	ENSMUSG00000037885.19	ENSMUST00000165413.9	2882	4	1047	-3304	1047	-9	3prime_fragment	FALSE	canonical	3	112	junction_2	10	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAAAATGAGTGTTTTG	7278	False	NA	25	True	AATAAA	-32	NA	129643483	129674198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129643925_129652407_129653158_129669693
ENSMUSG00000037885.19_7	chr2	+	4907	2	ISM	ENSMUSG00000037885.19	ENSMUST00000165413.9	2882	4	10312	-3297	10312	-16	3prime_fragment	FALSE	canonical	3	112	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACGCTATTTGAAAATGAG	NA	False	NA	18	True	AATAAA	-25	NA	129652748	129674191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129653158_129669693
ENSMUSG00000037885.19_8	chr2	+	2950	1	ISM	ENSMUSG00000037885.19	ENSMUST00000166282.3	5445	3	28812	9	28812	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAAAATGAGTGTTTTG	NA	False	NA	25	True	AATAAA	-32	NA	129671248	129674198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129671200_129674200
ENSMUSG00000037887.12_0	chr7	-	4806	7	FSM	ENSMUSG00000037887.12	ENSMUST00000039926.10	4804	7	-7	5	-7	-5	multi-exon	TRUE	canonical	0	0	junction_2	1.10554159678513	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGCCTCTGCTGACTC	6376	False	NA	NA	False	AATAAA	-19	NA	141649016	141633231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141636768_141637004_141637129_141637328_141637489_141638089_141638257_141642100_141642240_141643680_141644004_141648659
ENSMUSG00000037890.14_0	chr5	+	4371	37	FSM	ENSMUSG00000037890.14	ENSMUST00000041892.13	4401	37	20	10	1	-1	multi-exon	FALSE	canonical	3	17	junction_26	8.39311887467611	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATCTAACATTTTCCTG	8572	False	NA	NA	False	AATAAA	-13	NA	65357060	65417748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462_65401588_65403138_65403252_65404803_65404873_65406132_65406211_65408241_65408339_65409621_65409747_65412393_65412476_65413623_65413775_65414344_65414469_65415078_65415156_65415446_65415572_65417456
ENSMUSG00000037890.14_2	chr5	+	4020	25	ISM	ENSMUSG00000037890.14	ENSMUST00000204647.3	3381	26	15	0	1	0	intron_retention	FALSE	canonical	3	27	junction_5	5.76974267671926	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTGCATGCCCCCTAT	8586	False	NA	NA	False	NA	NA	NA	65357074	65401929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661
ENSMUSG00000037890.14_22	chr5	+	4380	37	NIC	ENSMUSG00000037890.14	novel	4401	37	NA	NA	7	1	combination_of_known_junctions	FALSE	canonical	1	2	junction_36	9.71646655025489	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTAACATTTTCCTGGA	8561	False	NA	NA	False	AATAAA	-15	NA	65357049	65417750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462_65401588_65403138_65403252_65404803_65404873_65406132_65406211_65408241_65408339_65409621_65409747_65412393_65412476_65413623_65413775_65414344_65414469_65415078_65415156_65415446_65415572_65417460
ENSMUSG00000037890.14_3	chr5	+	6265	36	FSM	ENSMUSG00000037890.14	ENSMUST00000203653.3	6279	36	13	1	-8	-1	multi-exon	FALSE	canonical	3	17	junction_26	8.32581429491851	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATCTAACATTTTCCTG	8563	False	NA	NA	False	AATAAA	-13	NA	65357051	65417748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462_65401588_65403138_65403252_65404803_65404873_65406132_65406211_65408241_65408339_65409621_65409747_65412393_65412476_65413623_65413775_65414344_65414469_65415078_65415156_65415446
ENSMUSG00000037890.14_6	chr5	+	3376	26	FSM	ENSMUSG00000037890.14	ENSMUST00000204647.3	3381	26	6	-1	6	1	multi-exon	FALSE	canonical	3	27	junction_5	5.73606136647787	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGCATGCCCCCTATA	8577	False	NA	NA	False	NA	NA	NA	65357065	65401930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462
ENSMUSG00000037894.14_0	chr3	+	867	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	103	99	-1	5	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	4155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTTAAACTTGCTTAATA	NA	False	NA	2	True	AATAAA	-17	NA	137570350	137572584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
ENSMUSG00000037896.18_1	chr12	+	5660	12	FSM	ENSMUSG00000037896.18	ENSMUST00000084968.14	5684	12	8	16	8	-16	multi-exon	FALSE	canonical	3	71	junction_1	9.8114455005324	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAAACAACGTAATGCA	NA	False	NA	NA	False	AATAAA	-32	NA	111005792	111082319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111006323_111006395_111006456_111048157_111048242_111059514_111059568_111063888_111064051_111066353_111066473_111068063_111068143_111070044_111070240_111075005_111075084_111075287_111075346_111076214_111076445_111078307
ENSMUSG00000037896.18_7	chr12	+	4098	2	ISM	ENSMUSG00000037896.18	ENSMUST00000084968.14	5684	12	70574	16	70127	-16	3prime_fragment	FALSE	canonical	3	95	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAAACAACGTAATGCA	8456	False	NA	NA	False	AATAAA	-32	NA	111076358	111082319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_111076445_111078307
ENSMUSG00000037896.18_8	chr12	+	2469	1	ISM	ENSMUSG00000037896.18	ENSMUST00000084968.14	5684	12	74066	16	73619	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAAACAACGTAATGCA	3341	False	NA	NA	False	AATAAA	-32	NA	111079850	111082319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_111079800_111082300
ENSMUSG00000037902.19_0	chr2	+	3775	8	FSM	ENSMUSG00000037902.19	ENSMUST00000103202.10	3982	8	199	8	-151	0	multi-exon	FALSE	canonical	3	97	junction_1	10.6215030259663	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGCCTTGGGGGT	NA	False	NA	NA	False	AATAAA	-12	NA	129435323	129474140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469906_129471846
ENSMUSG00000037902.19_1	chr2	+	3819	8	FSM	ENSMUSG00000037902.19	ENSMUST00000049262.14	3644	8	-183	8	167	0	multi-exon	FALSE	canonical	3	16	junction_7	35.4193536395697	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGCCTTGGGGGT	NA	False	NA	NA	False	AATAAA	-12	NA	129435291	129474140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469918_129471846
ENSMUSG00000037902.19_13	chr2	+	2965	6	FSM	ENSMUSG00000037902.19	ENSMUST00000160276.2	876	6	-53	-2036	-2	0	multi-exon	FALSE	canonical	3	15	junction_2	39.9729908813439	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGCCTTGGGGGT	NA	False	NA	NA	False	AATAAA	-12	NA	129435479	129474140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_129435615_129450823_129451181_129460376_129460491_129463122_129463148_129469865_129469906_129471846
ENSMUSG00000037902.19_2	chr2	+	3637	9	NIC	ENSMUSG00000037902.19	novel	3812	9	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	29.9934888767546	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGCCTTGGGGGT	NA	False	NA	NA	False	AATAAA	-12	NA	129434750	129474140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_129434813_129435523_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469906_129471846
ENSMUSG00000037902.19_23	chr2	+	3289	7	ISM	ENSMUSG00000037902.19	ENSMUST00000103202.10	3982	8	15894	8	-11586	0	3prime_fragment	FALSE	canonical	3	100	junction_6	9.50438495292217	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGCCTTGGGGGT	NA	False	NA	NA	False	AATAAA	-12	NA	129451018	129474140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469906_129471846
ENSMUSG00000037902.19_28	chr2	+	2693	5	ISM	ENSMUSG00000037902.19	ENSMUST00000103202.10	3982	8	23134	8	-4346	0	3prime_fragment	FALSE	canonical	3	100	junction_4	10.9857862713599	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGCCTTGGGGGT	NA	False	NA	NA	False	AATAAA	-12	NA	129458258	129474140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129458479_129460376_129460491_129463122_129463148_129469865_129469906_129471846
ENSMUSG00000037902.19_31	chr2	+	1887	1	ISM	ENSMUSG00000037902.19	ENSMUST00000161620.8	3824	9	37495	0	9649	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGCCTTGGGGGT	NA	False	NA	NA	False	AATAAA	-12	NA	129472253	129474140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129472300_129474100
ENSMUSG00000037902.19_6	chr2	+	3783	9	FSM	ENSMUSG00000037902.19	ENSMUST00000179001.8	3812	9	29	0	3	0	multi-exon	FALSE	canonical	3	26	junction_1	29.9934888767546	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGCCTTGGGGGT	NA	False	NA	NA	False	AATAAA	-12	NA	129434787	129474140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_129434996_129435523_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469906_129471846
ENSMUSG00000037904.15_0	chr12	-	1456	3	FSM	ENSMUSG00000037904.15	ENSMUST00000128353.8	2577	3	46	1075	1	-1	multi-exon	FALSE	canonical	3	78	junction_1	17	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGGATCTGCCTGGTC	NA	False	NA	-8	True	NA	NA	NA	110945428	110942861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_110943983_110944381_110944562_110945273
ENSMUSG00000037904.15_1	chr12	-	1678	3	FSM	ENSMUSG00000037904.15	ENSMUST00000043459.13	1706	3	27	1	1	-1	multi-exon	FALSE	canonical	3	51	junction_1	30.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGGATCTGCCTGGTC	NA	False	NA	-8	True	NA	NA	NA	110945428	110942861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_110944205_110944381_110944562_110945273
ENSMUSG00000037904.15_2	chr12	-	1580	4	NNC	ENSMUSG00000037904.15	novel	1563	4	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	38.9386982604994	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGAGGGATCTGCCTGGT	NA	False	NA	-9	True	NA	NA	NA	110945428	110942862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_110943983_110944079_110944205_110944381_110944562_110945273
ENSMUSG00000037904.15_3	chr12	-	1568	4	FSM	ENSMUSG00000037904.15	ENSMUST00000135131.2	1563	4	-4	-1	-4	-1	multi-exon	FALSE	canonical	0	0	junction_1	45.784519460427	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGGATCTGCCTGGTC	NA	False	NA	-8	True	NA	NA	NA	110945433	110942861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_110943983_110944097_110944205_110944381_110944562_110945273
ENSMUSG00000037904.15_6	chr12	-	882	1	ISM	ENSMUSG00000037904.15	ENSMUST00000128353.8	2577	3	1731	1075	946	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGGATCTGCCTGGTC	NA	False	NA	-8	True	NA	NA	NA	110943743	110942861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_110942900_110943700
ENSMUSG00000037905.14_0	chr5	+	1161	3	FSM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	36	5276	36	368	multi-exon	FALSE	canonical	3	373	junction_1	23.5	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGAGCTTTGAAGGGAAC	NA	False	NA	28	True	AATAAA	-20	NA	125518667	125532158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_125518957_125528733_125528837_125531389
ENSMUSG00000037905.14_1	chr5	+	1253	4	FSM	ENSMUSG00000037905.14	ENSMUST00000198811.2	745	4	-140	-368	42	368	multi-exon	FALSE	canonical	3	17	junction_2	166.423823080979	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGAGCTTTGAAGGGAAC	NA	False	NA	28	True	AATAAA	-20	NA	125518673	125532158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_125518957_125528733_125528837_125529211_125529310_125531389
ENSMUSG00000037905.14_10	chr5	+	2486	1	ISM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	16310	7	16128	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCAGACTCCTGGATGG	2399	False	NA	23	True	AATAAA	-15	NA	125534941	125537427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_125534900_125537400
ENSMUSG00000037907.17_1	chr11	-	3725	14	NIC	ENSMUSG00000037907.17	novel	3336	16	NA	NA	-133	-1	intron_retention	FALSE	canonical	1	1	junction_8	1.51129866956835	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCATTTCTACTTAACT	5671	False	NA	-2	True	AATAAA	-15	NA	77380637	77361313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_77363205_77363274_77363439_77363550_77363704_77363836_77363995_77364106_77364238_77364405_77364471_77365348_77365431_77367008_77367076_77367152_77367343_77367427_77367572_77368116_77368163_77368245_77368371_77368468_77368605_77380264
ENSMUSG00000037907.17_10	chr11	-	3642	14	NIC	ENSMUSG00000037907.17	novel	3336	16	NA	NA	-18	-1	intron_retention	FALSE	canonical	0	0	junction_4	1.77090222049559	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCATTTCTACTTAACT	5786	False	NA	-2	True	AATAAA	-15	NA	77380522	77361313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_77363205_77363274_77363439_77363550_77363704_77363836_77364027_77364106_77364238_77364405_77364471_77365348_77365431_77367008_77367076_77367152_77367343_77367427_77367572_77368116_77368163_77368245_77368371_77368468_77368605_77380264
ENSMUSG00000037907.17_3	chr11	-	1129	1	ISM	ENSMUSG00000037907.17	ENSMUST00000145934.8	2824	9	4820	3	2009	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCATTTCTACTTAACT	NA	False	NA	-2	True	AATAAA	-15	NA	77362442	77361313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_77361300_77362400
ENSMUSG00000037907.17_9	chr11	-	3117	15	FSM	ENSMUSG00000037907.17	ENSMUST00000037593.14	3105	15	-13	1	-1	1	multi-exon	FALSE	canonical	1	1	junction_1	1.63038745864476	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCATTTCTACTTAACTTT	5803	False	NA	0	True	AATAAA	-17	NA	77380505	77361311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_77362650_77363127_77363205_77363274_77363439_77363550_77363704_77363836_77363995_77364106_77364238_77364405_77364471_77365348_77365431_77367008_77367076_77367152_77367343_77367427_77367572_77368116_77368163_77368245_77368371_77368468_77368605_77380264
ENSMUSG00000037910.3_0	chr3	-	554	2	FSM	ENSMUSG00000037910.3	ENSMUST00000036023.3	593	2	17	22	17	-22	multi-exon	FALSE	canonical	3	53	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAACTACTTTAAACCG	NA	False	NA	-22	True	AATAAA	-20	NA	48563520	48560188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_48560355_48563132
ENSMUSG00000037916.15_0	chr19	-	1520	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	131	10	-2	-4	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	1149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATAGCTTGTCTGGAAC	6557	False	NA	-7	True	AATAAA	-20	NA	4062675	4057506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ENSMUSG00000037926.16_0	chr11	+	6428	15	FSM	ENSMUSG00000037926.16	ENSMUST00000037912.12	9178	15	-69	2819	-69	1880	multi-exon	TRUE	canonical	2	7	junction_1	4.23361186078213	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77107043	77348227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77107342_77218278_77218323_77283875_77283980_77289030_77289096_77298951_77299074_77307240_77307310_77308291_77308358_77312041_77312237_77316126_77316221_77316348_77316478_77320611_77320659_77328451_77328599_77332683_77332885_77340213_77341049_77344215
ENSMUSG00000037926.16_10	chr11	+	7469	2	ISM	ENSMUSG00000037926.16	ENSMUST00000181283.3	4475	14	101294	-4690	58139	-9	3prime_fragment	FALSE	canonical	3	15	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACAAATGTTTGTTTCA	342	False	NA	1	True	AATAAA	-11	NA	77340401	77351037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_77341049_77344215
ENSMUSG00000037926.16_2	chr11	+	9169	14	NIC	ENSMUSG00000037926.16	novel	4475	14	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	3.58497852237878	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAAATGTTTGTTTCAA	3628	False	NA	2	True	AATAAA	-12	NA	77239107	77351038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_77239380_77283875_77283980_77289030_77289096_77298951_77299074_77307240_77307310_77308291_77308358_77312041_77312237_77316126_77316221_77316348_77316478_77320611_77320659_77328451_77328599_77332683_77332885_77340213_77341049_77344215
ENSMUSG00000037926.16_4	chr11	+	175	1	ISM	ENSMUSG00000037926.16	ENSMUST00000180554.2	3482	10	83404	291	40255	-291	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAAAGGTCATTTTCAG	NA	False	NA	NA	False	NA	NA	NA	77322517	77322692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_77322500_77322700
ENSMUSG00000037926.16_6	chr11	+	4241	1	ISM	ENSMUSG00000037926.16	ENSMUST00000037912.12	9178	15	239685	8	64535	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAAATGTTTGTTTCAA	6738	False	NA	2	True	AATAAA	-12	NA	77346797	77351038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_77346800_77351000
ENSMUSG00000037933.17_0	chr13	+	6326	7	FSM	ENSMUSG00000037933.17	ENSMUST00000048544.14	6309	7	-17	0	-17	0	multi-exon	FALSE	canonical	3	26	junction_2	11.1616904335021	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACATGCGTGCCCTCTG	1411	False	NA	11	True	AATAAA	-18	NA	49495043	49540495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_49495387_49522904_49523118_49528692_49528846_49531365_49531828_49532483_49533510_49534046_49534199_49536518
ENSMUSG00000037933.17_10	chr13	+	3220	4	ISM	ENSMUSG00000037933.17	ENSMUST00000110085.11	4588	8	37630	7	-3863	0	3prime_fragment	FALSE	canonical	3	30	junction_3	9.28559218478941	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACATGCGTGCCCTCTG	NA	False	NA	11	True	AATAAA	-18	NA	49532701	49540495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_49533510_49534046_49534199_49536518_49536730_49538446
ENSMUSG00000037933.17_12	chr13	+	4745	3	ISM	ENSMUSG00000037933.17	ENSMUST00000110085.11	4588	8	37820	9	-3673	-2	intron_retention	FALSE	canonical	3	46	junction_1	3	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCACATGCGTGCCCTC	NA	False	NA	9	True	AATAAA	-16	NA	49532891	49540493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_49533510_49534046_49534199_49536518
ENSMUSG00000037933.17_15	chr13	+	2864	1	ISM	ENSMUSG00000037933.17	ENSMUST00000048544.14	6309	7	42566	5	1062	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAAGCACATGCGTGCC	NA	False	NA	6	True	AATAAA	-13	NA	49537626	49540490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_49537600_49540500
ENSMUSG00000037933.17_2	chr13	+	4594	8	FSM	ENSMUSG00000037933.17	ENSMUST00000110085.11	4588	8	-13	7	-2	0	multi-exon	FALSE	canonical	3	26	junction_2	11.2213353638031	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACATGCGTGCCCTCTG	1426	False	NA	11	True	AATAAA	-18	NA	49495058	49540495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_49495387_49522904_49523118_49528692_49528846_49531365_49531828_49532483_49533510_49534046_49534199_49536518_49536730_49538446
ENSMUSG00000037933.17_6	chr13	+	4688	9	NIC	ENSMUSG00000037933.17	novel	4588	8	NA	NA	-8	0	intron_retention	FALSE	canonical	0	0	junction_8	20.4110111214511	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACATGCGTGCCCTCTG	1420	False	NA	11	True	AATAAA	-18	NA	49495052	49540495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_49495387_49522904_49523118_49528692_49528846_49531365_49531828_49532483_49533510_49534046_49534199_49536518_49536730_49537813_49537902_49538446
ENSMUSG00000037933.17_9	chr13	+	3832	5	ISM	ENSMUSG00000037933.17	ENSMUST00000110085.11	4588	8	36349	20	-5144	-13	3prime_fragment	FALSE	canonical	3	30	junction_4	10.4283268073071	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAACAATTGAAGCACA	NA	False	NA	-2	True	AATAAA	-5	NA	49531420	49540482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_49531828_49532483_49533510_49534046_49534199_49536518_49536730_49538446
ENSMUSG00000037935.17_0	chr11	-	1406	11	FSM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	556	957	-15	-12	multi-exon	FALSE	canonical	3	598	junction_2	51.2922021363872	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAATGGTGTTATGTGG	NA	False	NA	-13	True	AATGAA	-24	NA	99121287	99100829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
ENSMUSG00000037935.17_1	chr11	-	1314	10	NIC	ENSMUSG00000037935.17	novel	2919	11	NA	NA	-28	-12	combination_of_known_junctions	FALSE	canonical	3	48	junction_7	198.840962568234	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAATGGTGTTATGTGG	NA	False	NA	-13	True	AATGAA	-24	NA	99121300	99100829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99119100_99119145_99119322_99119375_99121227
ENSMUSG00000037935.17_14	chr11	-	1342	10	NIC	ENSMUSG00000037935.17	novel	2919	11	NA	NA	-4	-13	combination_of_known_splicesites	FALSE	canonical	3	18	junction_9	208.072874223562	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTAATGGTGTTATGTG	NA	False	NA	-14	True	AATGAA	-23	NA	99121276	99100830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99121227
ENSMUSG00000037936.16_0	chr5	-	2367	12	FSM	ENSMUSG00000037936.16	ENSMUST00000111390.8	2367	12	-3	3	-3	-3	multi-exon	TRUE	canonical	3	487	junction_1	58.8981471316135	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACACTGGCTTCTGTGA	NA	False	NA	-6	True	AATAAA	-16	NA	125418138	125354155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
ENSMUSG00000037936.16_1	chr5	-	2496	13	FSM	ENSMUSG00000037936.16	ENSMUST00000086075.13	2521	13	20	5	-3	-3	multi-exon	FALSE	canonical	3	188	junction_1	171.680966232913	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACACTGGCTTCTGTGA	NA	False	NA	-6	True	AATAAA	-16	NA	125418138	125354155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
ENSMUSG00000037936.16_3	chr5	-	1085	4	ISM	ENSMUSG00000037936.16	ENSMUST00000111390.8	2367	12	53601	3	-793	-3	3prime_fragment	FALSE	canonical	3	487	junction_1	96.6413760019773	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACACTGGCTTCTGTGA	NA	False	NA	-6	True	AATAAA	-16	NA	125364534	125354155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422
ENSMUSG00000037938.5_0	chr2	+	1176	4	FSM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	116	33	12	-33	multi-exon	FALSE	canonical	3	556	junction_1	75.455652906562	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCGGAAAGCTATGGCT	3941	False	NA	12	True	NA	NA	NA	128971735	128976021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_128971778_128972097_128972239_128972320_128972487_128975194
ENSMUSG00000037938.5_14	chr2	+	1134	3	ISM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	478	33	328	-33	3prime_fragment	FALSE	canonical	3	695	junction_1	18	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCGGAAAGCTATGGCT	4303	False	NA	12	True	NA	NA	NA	128972097	128976021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_128972239_128972320_128972487_128975194
ENSMUSG00000037938.5_2	chr2	+	3891	3	ISM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	116	26	12	-26	intron_retention	FALSE	canonical	3	556	junction_1	69.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCTATGGCTTGGAGAC	3941	False	NA	19	True	NA	NA	NA	128971735	128976028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_128971778_128972097_128972239_128972320
ENSMUSG00000037949.9_0	chr9	-	2601	13	FSM	ENSMUSG00000037949.9	ENSMUST00000042546.4	2653	13	33	19	-4	0	multi-exon	FALSE	canonical	3	21	junction_1	6.44797556515911	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCTGCTTCTCCAAGACT	NA	False	NA	-16	True	ATTAAA	-18	NA	122123456	122004958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_122005545_122030836_122030954_122080212_122080342_122082001_122082194_122086121_122086305_122087982_122088058_122088600_122088657_122090149_122090720_122092735_122092856_122100264_122100400_122101432_122101631_122104576_122104730_122123369
ENSMUSG00000037957.15_0	chr12	+	2361	3	FSM	ENSMUSG00000037957.15	ENSMUST00000095410.8	2384	3	17	6	-9	-6	multi-exon	FALSE	canonical	3	142	junction_2	4	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGCAGTTTGTAGAAC	5363	False	NA	13	True	AATAAA	-12	NA	110704442	110761456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110704712_110745729_110745913_110759547
ENSMUSG00000037957.15_10	chr12	+	1281	3	FSM	ENSMUSG00000037957.15	ENSMUST00000193053.6	1351	3	65	5	-9	-5	multi-exon	FALSE	canonical	3	22	junction_2	64	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACTATTTGTTTATCC	5363	False	NA	NA	False	ATTAAA	-10	NA	110704442	110770667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110704712_110745729_110745913_110769838
ENSMUSG00000037957.15_4	chr12	+	3615	1	FSM	ENSMUSG00000037957.15	ENSMUST00000191983.2	2252	1	31	-1394	2	-608	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	5374	False	NA	NA	False	NA	NA	NA	110704453	110708068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110704500_110708100
ENSMUSG00000037957.15_7	chr12	+	2531	4	NIC	ENSMUSG00000037957.15	novel	2384	3	NA	NA	1	-5	combination_of_known_splicesites	FALSE	canonical	3	12	junction_3	63.2525800966956	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACTATTTGTTTATCC	5373	False	NA	NA	False	ATTAAA	-10	NA	110704452	110770667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_110704712_110745729_110745913_110759547_110760808_110769838
ENSMUSG00000037957.15_8	chr12	+	2596	5	NIC	ENSMUSG00000037957.15	novel	960	3	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	61.3977809045246	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACTATTTGTTTATCC	5373	False	NA	NA	False	ATTAAA	-10	NA	110704452	110770667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_110704712_110745729_110745913_110759547_110760808_110763376_110763442_110769838
ENSMUSG00000037958.14_0	chr11	-	1948	7	FSM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	15	1151	15	-1151	multi-exon	FALSE	canonical	3	222	junction_6	27.2457947825593	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGAGTTTTTTTGGTTT	NA	False	NA	0	True	AATAAA	-19	NA	76969246	76936268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
ENSMUSG00000037958.14_1	chr11	-	1926	1	ISM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	32202	16	31804	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAGTCATTGGAACCTG	NA	False	NA	-21	True	AATAAA	-12	NA	76937059	76935133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_76935100_76937100
ENSMUSG00000037958.14_2	chr11	-	2722	3	ISM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	28997	16	28599	-16	3prime_fragment	FALSE	canonical	3	277	junction_2	8	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAGTCATTGGAACCTG	NA	False	NA	-21	True	AATAAA	-12	NA	76940264	76935133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_76937581_76939178_76939288_76940098
ENSMUSG00000037960.12_1	chr13	-	796	6	FSM	ENSMUSG00000037960.12	ENSMUST00000048946.7	804	6	8	0	8	0	multi-exon	FALSE	canonical	3	362	junction_5	10.4115320678563	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCCTGTCGAATGTCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	49369494	49356426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361623_49369412
ENSMUSG00000037960.12_4	chr13	-	897	6	NIC	ENSMUSG00000037960.12	novel	804	6	NA	NA	-70	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_5	138.488411067497	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCCTGTCGAATGTCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	49369412	49356426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361623_49369229
ENSMUSG00000037960.12_5	chr13	-	713	5	NIC	ENSMUSG00000037960.12	novel	804	6	NA	NA	31	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	158.076721878966	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCCTGTCGAATGTCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	49369471	49356426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_49356712_49357193_49357266_49358667_49358822_49361479_49361623_49369412
ENSMUSG00000037960.12_7	chr13	-	941	5	NIC	ENSMUSG00000037960.12	novel	804	6	NA	NA	2	0	intron_retention	FALSE	canonical	3	362	junction_4	11.146748404804	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCCTGTCGAATGTCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	49369500	49356426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_49356712_49357193_49357465_49358667_49358822_49361479_49361623_49369412
ENSMUSG00000037965.16_0	chr16	-	3758	23	FSM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	53	14	1	-14	multi-exon	FALSE	canonical	3	82	junction_12	24.8770530528646	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGACTTTCATAGTTTTG	NA	False	NA	-13	True	AATAAA	-14	NA	10994204	10954469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
ENSMUSG00000037965.16_1	chr16	-	4298	22	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	1	-14	intron_retention	FALSE	canonical	3	105	junction_12	19.807348781693	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGACTTTCATAGTTTTG	NA	False	NA	-13	True	AATAAA	-14	NA	10994204	10954469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
ENSMUSG00000037965.16_16	chr16	-	5366	21	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	1	-12	intron_retention	FALSE	canonical	3	32	junction_4	32.0850042854914	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTTTCATAGTTTTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	10994204	10954467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963105_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
ENSMUSG00000037965.16_4	chr16	-	3206	12	ISM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	24297	12	652	-12	intron_retention	FALSE	canonical	3	126	junction_3	18.0068857353041	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTTTCATAGTTTTGGT	1328	False	NA	-11	True	AATAAA	-16	NA	10969960	10954467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002
ENSMUSG00000037965.16_54	chr16	-	2884	9	ISM	ENSMUSG00000037965.16	ENSMUST00000140755.9	2763	22	2	13381	2	-7	5prime_fragment	FALSE	canonical	3	158	junction_3	8.61593726764535	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10994203	10972053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
ENSMUSG00000037965.16_7	chr16	-	5409	21	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	18	-14	intron_retention	FALSE	canonical	3	126	junction_3	16.4233827209866	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGACTTTCATAGTTTTG	NA	False	NA	-13	True	AATAAA	-14	NA	10994187	10954469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
ENSMUSG00000037965.16_9	chr16	-	3689	22	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	5	-14	combination_of_known_splicesites	FALSE	canonical	1	4	junction_12	36.8186091171878	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGACTTTCATAGTTTTG	NA	False	NA	-13	True	AATAAA	-14	NA	10994200	10954469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
ENSMUSG00000037966.16_1	chr13	+	1162	4	FSM	ENSMUSG00000037966.16	ENSMUST00000049022.15	1187	4	26	-1	-14	1	multi-exon	FALSE	canonical	3	352	junction_2	21.013223349966	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGTTCCATGTGCCAC	NA	False	NA	14	True	AATAAA	-16	NA	49340986	49349721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_49341114_49347211_49347441_49348369_49348534_49349079
ENSMUSG00000037971.11_0	chr9	-	883	4	FSM	ENSMUSG00000037971.11	ENSMUST00000042468.9	2082	4	300	899	8	0	multi-exon	TRUE	canonical	3	19	junction_2	3.74165738677394	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAATCTCTATTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	50679452	50675026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50675317_50675523_50675591_50675995_50676227_50679157
ENSMUSG00000037972.8_0	chr16	+	2853	2	FSM	ENSMUSG00000037972.8	ENSMUST00000089011.6	2872	2	10	9	10	-9	multi-exon	FALSE	canonical	3	17	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCCCAATGTACAGTCTT	NA	False	NA	8	True	AATAAA	-24	NA	10884203	10892840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_10884312_10890095
ENSMUSG00000037972.8_2	chr16	+	1667	1	ISM	ENSMUSG00000037972.8	ENSMUST00000089011.6	2872	2	6975	14	6975	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTATATTCCCAATGTACA	NA	False	NA	3	True	AATAAA	-19	NA	10891168	10892835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_10891200_10892800
ENSMUSG00000037977.7_0	chr9	+	2671	6	FSM	ENSMUSG00000037977.7	ENSMUST00000042581.4	2599	6	-81	9	-81	-9	multi-exon	FALSE	canonical	1	2	junction_1	1.32664991614216	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAAGAGATTGGAGTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	107217719	107226882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107217988_107218509_107218617_107219405_107219789_107223344_107223371_107224016_107224165_107225143
ENSMUSG00000037979.14_0	chr5	-	2206	4	FSM	ENSMUSG00000037979.14	ENSMUST00000036206.14	2473	4	239	28	239	-28	multi-exon	FALSE	canonical	3	158	junction_3	9.0921211313239	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAATAAAATCTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124939249	124911509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124913356_124916006_124916049_124916724_124916872_124939078
ENSMUSG00000037979.14_2	chr5	-	2313	5	NIC	ENSMUSG00000037979.14	novel	809	5	NA	NA	229	-18	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	82.6177190437983	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTAAAAAAAATAAAAACT	NA	False	NA	NA	False	NA	NA	NA	124939259	124911499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_124913356_124913543_124913631_124916006_124916049_124916724_124916872_124939078
ENSMUSG00000037989.16_1	chr13	-	5414	3	ISM	ENSMUSG00000037989.16	ENSMUST00000159559.8	6584	29	99499	0	13150	0	intron_retention	FALSE	canonical	3	12	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAGGACTTTGGTATTTC	9088	False	NA	NA	False	AATAAA	-15	NA	49201209	49189785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_49189982_49192567_49192680_49196103
ENSMUSG00000037989.16_2	chr13	-	6445	27	NIC	ENSMUSG00000037989.16	novel	6738	28	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_15	3.27894484399186	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAGGACTTTGGTATTTC	7739	False	NA	NA	False	AATAAA	-15	NA	49301498	49189785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_49189982_49192567_49192680_49196103_49196343_49204832_49205004_49206034_49206250_49210310_49210991_49211087_49211177_49213826_49213903_49214176_49214998_49220722_49220843_49221392_49221439_49221548_49221720_49224245_49224363_49224430_49224600_49225466_49225517_49229612_49230141_49231534_49231727_49232146_49232303_49235379_49235580_49238725_49239018_49244292_49244513_49245711_49245801_49248816_49248975_49254438_49254660_49256265_49256439_49300027_49300711_49301237
ENSMUSG00000037989.16_7	chr13	-	2550	6	ISM	ENSMUSG00000037989.16	ENSMUST00000091623.10	6897	29	22	52367	20	-29912	5prime_fragment	FALSE	canonical	1	3	junction_4	1.85472369909914	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAATTTCTCAGTGTCTC	7769	False	NA	NA	False	AATAAA	-14	NA	49301468	49244716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_49245801_49248816_49248975_49254438_49254660_49256265_49256439_49300027_49300711_49301237
ENSMUSG00000037991.10_0	chr16	+	863	2	FSM	ENSMUSG00000037991.10	ENSMUST00000037913.9	3742	2	9	2870	0	-2870	multi-exon	TRUE	canonical	3	158	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAGAATGGCATAGTGG	NA	False	NA	5	True	ATTAAA	-13	NA	10652931	10658232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_10653255_10657692
ENSMUSG00000037991.10_5	chr16	+	164	1	ISM	ENSMUSG00000037991.10	ENSMUST00000037913.9	3742	2	7029	987	7020	-987	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATCTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10659951	10660115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_10660000_10660100
ENSMUSG00000037992.17_0	chr11	+	3153	9	FSM	ENSMUSG00000037992.17	ENSMUST00000107474.8	2380	9	2	-775	2	-5	multi-exon	FALSE	canonical	3	15	junction_1	86.2060576467803	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAATGCCTCTTGCCTCTC	8808	False	NA	9	True	AATAAA	-14	NA	98818645	98865763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98818737_98841070_98841622_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
ENSMUSG00000037992.17_24	chr11	+	2421	8	FSM	ENSMUSG00000037992.17	ENSMUST00000107473.3	3238	8	36	781	36	-1	multi-exon	FALSE	canonical	3	97	junction_1	54.9043695521437	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATACTGAAGGAATTTG	7474	False	NA	5	True	NA	NA	NA	98851273	98864987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98851960_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
ENSMUSG00000037992.17_5	chr11	+	3252	9	FSM	ENSMUSG00000037992.17	ENSMUST00000107475.9	2469	9	-12	-771	-12	-9	multi-exon	FALSE	canonical	3	106	junction_2	61.7220331405245	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTATAATGCCTCTTGCC	NA	False	NA	5	True	AATAAA	-10	NA	98828511	98865759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98828706_98841070_98841622_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
ENSMUSG00000037993.9_2	chr8	-	4214	27	NNC	ENSMUSG00000037993.9	novel	4463	27	NA	NA	240	-6	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_24	18.695314731221	126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATATTATTGCATTTTAA	NA	False	NA	-8	True	AATAAA	-13	NA	110292253	110274648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_110275116_110276405_110276528_110278194_110278291_110278699_110278826_110278988_110279124_110279221_110279378_110279721_110279877_110279976_110280186_110280779_110280893_110281275_110281384_110281544_110281662_110281751_110281863_110282271_110282413_110282651_110282838_110282988_110283176_110283505_110283644_110284829_110284943_110285275_110285384_110285550_110285713_110286169_110286326_110286717_110286795_110286969_110287089_110287199_110287348_110287931_110288037_110288580_110288769_110289075_110289416_110292122
ENSMUSG00000037993.9_5	chr8	-	4214	27	FSM	ENSMUSG00000037993.9	ENSMUST00000042601.9	4463	27	243	6	243	-6	multi-exon	TRUE	canonical	3	61	junction_24	17.2223966609053	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATATTATTGCATTTTAA	NA	False	NA	-8	True	AATAAA	-13	NA	110292250	110274648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_110275116_110276405_110276528_110278194_110278291_110278699_110278826_110278988_110279124_110279221_110279378_110279721_110279877_110279976_110280186_110280779_110280893_110281275_110281384_110281544_110281662_110281751_110281863_110282271_110282413_110282651_110282838_110282988_110283176_110283505_110283644_110284829_110284943_110285275_110285384_110285550_110285713_110286169_110286326_110286717_110286795_110286969_110287089_110287199_110287348_110287931_110288040_110288580_110288769_110289075_110289416_110292122
ENSMUSG00000037994.15_1	chr3	+	1985	13	FSM	ENSMUSG00000037994.15	ENSMUST00000051849.10	4818	13	-18	2851	-4	1	multi-exon	FALSE	canonical	0	0	junction_3	1.55232800084976	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTTGATACATTTCTT	NA	False	NA	NA	False	AATAAA	-18	NA	135013487	135048297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_135013543_135022814_135022955_135024040_135024222_135027646_135027818_135029389_135029533_135030269_135030398_135031854_135032031_135034752_135034860_135035528_135035679_135036343_135036453_135038176_135038314_135042114_135042336_135048030
ENSMUSG00000037995.16_0	chr1	+	4145	21	NIC	ENSMUSG00000037995.16	novel	636	6	NA	NA	21	-2	combination_of_known_junctions	TRUE	canonical	1	1	junction_1	3.57631094844953	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTGTCACCTCTCTTT	NA	False	NA	2	True	AATAAA	-14	NA	172309375	172326442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_172309436_172311847_172312114_172312348_172312538_172317079_172317233_172317855_172318011_172318221_172318340_172319181_172319324_172319431_172319578_172319667_172319811_172321053_172321195_172321664_172321782_172321972_172322124_172322319_172322444_172322674_172322851_172323100_172323352_172323549_172323635_172323717_172323895_172324164_172324208_172324452_172325314_172325563_172325692_172325923
ENSMUSG00000037995.16_1	chr1	+	4120	21	FSM	ENSMUSG00000037995.16	ENSMUST00000052629.13	4133	21	10	3	5	-3	multi-exon	FALSE	canonical	2	4	junction_16	2.95127091267474	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTCTGTCACCTCTCTT	NA	False	NA	1	True	AATAAA	-13	NA	172309791	172326441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_172309828_172311847_172312114_172312348_172312538_172317079_172317233_172317855_172318011_172318221_172318340_172319181_172319324_172319431_172319578_172319667_172319811_172321053_172321195_172321664_172321782_172321972_172322124_172322319_172322444_172322674_172322851_172323100_172323352_172323549_172323635_172323717_172323895_172324164_172324208_172324452_172325314_172325563_172325692_172325923
ENSMUSG00000037995.16_16	chr1	+	2573	11	ISM	ENSMUSG00000037995.16	ENSMUST00000111235.8	4205	21	11844	2	197	-1	3prime_fragment	FALSE	canonical	2	4	junction_6	3.06594194335118	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTGTCACCTCTCTTTG	4152	False	NA	3	True	AATAAA	-15	NA	172321724	172326443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_172321782_172321972_172322124_172322319_172322444_172322674_172322851_172323100_172323352_172323549_172323635_172323717_172323895_172324164_172324208_172324452_172325314_172325563_172325692_172325923
ENSMUSG00000037997.13_1	chr6	+	3694	8	NIC	ENSMUSG00000037997.13	novel	3746	9	NA	NA	9	-4	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	15.8513502933488	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTGGCTGCCTGTGTG	NA	False	NA	8	True	ATTAAA	-13	NA	127430591	127471199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_127430786_127444994_127445116_127447664_127447794_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
ENSMUSG00000037997.13_14	chr6	+	1751	7	FSM	ENSMUSG00000037997.13	ENSMUST00000112193.8	1725	7	-27	1	0	-1	multi-exon	FALSE	canonical	3	34	junction_4	10.0443461155462	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTTGATTTCTGGTATT	NA	False	NA	NA	False	AATAAA	-12	NA	127430610	127456017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961
ENSMUSG00000037997.13_17	chr6	+	2099	1	ISM	ENSMUSG00000037997.13	ENSMUST00000112191.8	3414	6	45298	4	14483	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTGGCTGCCTGTGTG	NA	False	NA	8	True	ATTAAA	-13	NA	127469100	127471199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_127469100_127471200
ENSMUSG00000037997.13_3	chr6	+	3441	6	NIC	ENSMUSG00000037997.13	novel	3746	9	NA	NA	12	-4	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	18.7125626251457	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTGGCTGCCTGTGTG	NA	False	NA	8	True	ATTAAA	-13	NA	127430594	127471199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_127430786_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
ENSMUSG00000037997.13_4	chr6	+	3815	9	FSM	ENSMUSG00000037997.13	ENSMUST00000039680.7	3746	9	-94	25	9	-4	multi-exon	FALSE	canonical	3	34	junction_4	10.4403065089106	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTGGCTGCCTGTGTG	NA	False	NA	8	True	ATTAAA	-13	NA	127430591	127471199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
ENSMUSG00000037997.13_5	chr6	+	3690	8	NIC	ENSMUSG00000037997.13	novel	3746	9	NA	NA	7	-7	combination_of_known_junctions	FALSE	canonical	1	6	junction_2	19.9632315080725	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCAGGTCTTGGCTGCCTGT	NA	False	NA	5	True	ATTAAA	-10	NA	127430589	127471196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_127430786_127444994_127445116_127447667_127447794_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
ENSMUSG00000037997.13_6	chr6	+	3802	9	NIC	ENSMUSG00000037997.13	novel	3746	9	NA	NA	-11	-6	combination_of_known_junctions	FALSE	canonical	1	6	junction_2	16.3018403869011	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGTCTTGGCTGCCTGTG	NA	False	NA	6	True	ATTAAA	-11	NA	127430599	127471197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_127430786_127444994_127445116_127447667_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
ENSMUSG00000037999.14_0	chr5	-	7347	33	FSM	ENSMUSG00000037999.14	ENSMUST00000076623.8	7306	33	-44	3	-5	-3	multi-exon	FALSE	canonical	1	2	junction_29	4.00183063578408	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATATGCCTCTTGTGTCTC	NA	False	NA	0	True	ATTAAA	-21	NA	62923507	62759790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_62762000_62763417_62763553_62769046_62769111_62771336_62771373_62772346_62772430_62779181_62779310_62787475_62787605_62793294_62793413_62796304_62796380_62798670_62798740_62800137_62800286_62803525_62803632_62807031_62807245_62811388_62811553_62826131_62826196_62826369_62826569_62827222_62827326_62828278_62828424_62833294_62833430_62833854_62834030_62834444_62834628_62835287_62835374_62840697_62840898_62842903_62843020_62855583_62855763_62863950_62864072_62872075_62872146_62887863_62888218_62890312_62890405_62891242_62891320_62892330_62892390_62906118_62907160_62923236
ENSMUSG00000038000.11_1	chr8	-	1413	11	FSM	ENSMUSG00000038000.11	ENSMUST00000042608.8	3154	11	1	1740	1	-1	multi-exon	FALSE	canonical	3	179	junction_7	13.7637204272682	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGGAGAGAGATTCAGG	NA	False	NA	-14	True	AATAAA	-15	NA	106427715	106424790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
ENSMUSG00000038000.11_2	chr8	-	1359	10	NIC	ENSMUSG00000038000.11	novel	3154	11	NA	NA	6	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_8	60.9681155286196	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427710	106424789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106427035_106427334_106427472_106427551
ENSMUSG00000038000.11_8	chr8	-	1526	11	ISM	ENSMUSG00000038000.11	ENSMUST00000211870.2	2722	12	2	2298	1	0	5prime_fragment	FALSE	canonical	3	32	junction_7	55.0807588909231	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427715	106424789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426793_106426913_106426991_106427078_106427173_106427334_106427472_106427551
ENSMUSG00000038002.10_0	chr17	-	1041	1	ISM	ENSMUSG00000038002.10	ENSMUST00000073337.8	7519	21	52896	68	52896	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAAATTTCCAGTTCGGC	3128	False	NA	-68	True	AATAAA	-44	NA	25181308	25180267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_25180300_25181300
ENSMUSG00000038002.10_1	chr17	-	7627	21	FSM	ENSMUSG00000038002.10	ENSMUST00000233774.2	7674	21	41	6	35	-6	multi-exon	FALSE	canonical	1	1	junction_9	1.96468827043885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTAATGTCTGTCTTTTGT	5414	False	NA	-6	True	CATAAA	-17	NA	25234721	25180205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25183921_25187899_25188046_25189388_25189554_25190350_25190583_25191309_25191376_25192054_25192234_25192477_25192583_25193678_25193761_25196305_25196381_25196469_25196652_25198459_25198638_25201197_25202371_25202917_25203000_25203948_25204073_25204495_25204582_25211243_25211293_25213559_25213644_25216426_25216581_25222185_25222380_25232661_25233000_25234503
ENSMUSG00000038005.16_0	chr8	+	1184	8	FSM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	-2	9	-2	-2	multi-exon	FALSE	canonical	3	724	junction_4	79.3373062516324	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATACGGCTCTTCTAGTG	NA	False	NA	13	True	AATAAA	-26	NA	61343482	61360605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
ENSMUSG00000038005.16_1	chr8	+	2806	7	ISM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	-8	9	-2	-2	intron_retention	FALSE	canonical	3	724	junction_4	83.6827673751027	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATACGGCTCTTCTAGTG	NA	False	NA	13	True	AATAAA	-26	NA	61343476	61360605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581
ENSMUSG00000038007.15_1	chr4	+	4222	6	FSM	ENSMUSG00000038007.15	ENSMUST00000045224.14	4216	6	-11	5	-11	-5	multi-exon	FALSE	canonical	2	4	junction_1	3.00665927567458	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTATTTCTGAAATTATTT	NA	False	NA	21	True	AATAAA	-12	NA	86792621	86839107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_86792834_86804394_86804510_86805260_86805403_86818718_86818857_86829852_86829991_86835630
ENSMUSG00000038007.15_10	chr4	+	699	2	FSM	ENSMUSG00000038007.15	ENSMUST00000135874.2	2943	2	41	2203	41	128	multi-exon	FALSE	canonical	3	467	junction_1	0	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTTGGTGTGGTTCAAG	4161	False	NA	21	True	NA	NA	NA	86848968	86850856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_86849080_86850268
ENSMUSG00000038007.15_13	chr4	+	505	1	ISM	ENSMUSG00000038007.15	ENSMUST00000135874.2	2943	2	1423	2204	1423	127	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTGGTGTGGTTCAA	5543	False	NA	20	True	NA	NA	NA	86850350	86850855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_86850400_86850900
ENSMUSG00000038007.15_2	chr4	+	4133	5	ISM	ENSMUSG00000038007.15	ENSMUST00000045224.14	4216	6	11635	9	11617	-9	3prime_fragment	FALSE	canonical	2	7	junction_3	2.29128784747792	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATCTATTTCTGAAATT	7701	False	NA	17	True	AATAAA	-8	NA	86804267	86839103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_86804510_86805260_86805403_86818718_86818857_86829852_86829991_86835630
ENSMUSG00000038007.15_9	chr4	+	2488	1	ISM	ENSMUSG00000038007.15	ENSMUST00000045224.14	4216	6	43991	1	-12304	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGAAATTATTTCTTT	NA	False	NA	25	True	AATAAA	-16	NA	86836623	86839111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_86836600_86839100
ENSMUSG00000038009.8_10	chr15	+	1385	3	NIC	ENSMUSG00000038009.8	novel	381	3	NA	NA	-4	-95	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	29	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTGACTACCGTCTCC	1038	False	NA	-92	True	AATATA	-12	NA	98991046	99002523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_98991152_98998703_98999657_99002196
ENSMUSG00000038009.8_13	chr15	+	2250	2	ISM	ENSMUSG00000038009.8	ENSMUST00000061295.7	1564	3	-125	1979	-125	1841	5prime_fragment	FALSE	canonical	3	51	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTTGCATTCAACATTC	3898	False	NA	NA	False	NA	NA	NA	98997167	99000639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98997482_98998703
ENSMUSG00000038009.8_2	chr15	+	1326	3	NIC	ENSMUSG00000038009.8	novel	381	3	NA	NA	-134	-85	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	26	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCGTCTCCTCGATTATAC	3889	False	NA	-82	True	AATATA	-22	NA	98997158	99002533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_98997195_98998703_98999657_99002196
ENSMUSG00000038009.8_3	chr15	+	1517	3	FSM	ENSMUSG00000038009.8	ENSMUST00000061295.7	1564	3	44	3	44	-3	multi-exon	FALSE	canonical	3	51	junction_1	3.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATACCACGGAATCCTAGC	4067	False	NA	0	True	AATAAA	-18	NA	98997336	99002615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_98997482_98998703_98999657_99002196
ENSMUSG00000038009.8_4	chr15	+	1452	3	NNC	ENSMUSG00000038009.8	novel	1564	3	NA	NA	-12	-8	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	18.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGCTATACCACGGAATC	4011	False	NA	-5	True	AATAAA	-13	NA	98997280	99002610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_98997366_98998703_98999657_99002196
ENSMUSG00000038009.8_9	chr15	+	1114	2	ISM	ENSMUSG00000038009.8	ENSMUST00000061295.7	1564	3	1664	8	1664	-8	3prime_fragment	FALSE	canonical	3	58	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGCTATACCACGGAATC	5687	False	NA	-5	True	AATAAA	-13	NA	98998956	99002610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98999657_99002196
ENSMUSG00000038010.10_1	chr10	+	2463	16	FSM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	-10	2	-10	-2	multi-exon	FALSE	canonical	3	28	junction_12	10.0598210719674	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAGTAGAGTCCCTTCT	933	False	NA	NA	False	AATAAA	-22	NA	58333759	58412064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619_58376737_58380738_58380932_58397722_58397900_58409410_58409550_58411510
ENSMUSG00000038010.10_14	chr10	+	3502	1	Genic_Genomic	ENSMUSG00000038010.10	novel	NA	NA	NA	NA	-2	-925	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	941	False	NA	NA	False	NA	NA	NA	58333767	58337269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_+_58333800_58337300
ENSMUSG00000038010.10_2	chr10	+	2142	12	ISM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	-22	34600	-22	-34600	5prime_fragment	FALSE	canonical	3	46	junction_9	6.71497647731614	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCTTTAGATCTTCACCT	921	False	NA	NA	False	NA	NA	NA	58333747	58377466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619
ENSMUSG00000038010.10_9	chr10	+	2335	15	NIC	ENSMUSG00000038010.10	novel	2455	16	NA	NA	-10	-2	combination_of_known_splicesites	FALSE	canonical	2	2	junction_4	17.1513371883051	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAGTAGAGTCCCTTCT	933	False	NA	NA	False	AATAAA	-22	NA	58333759	58412064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619_58376737_58380738_58380932_58397722_58397900_58409410_58409550_58411510
ENSMUSG00000038011.16_1	chr5	+	8764	49	ISM	ENSMUSG00000038011.16	ENSMUST00000141137.7	13862	78	49714	1	-11754	-1	3prime_fragment	TRUE	canonical	0	0	junction_1	2.62127712193885	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGGTTTGTGTGTTTTGG	NA	False	NA	NA	False	ATTAAA	-16	NA	124851862	124911366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_124852310_124852408_124852593_124854222_124854358_124854880_124855034_124856147_124856337_124859331_124859479_124860891_124861084_124862211_124862331_124864380_124864540_124866825_124866962_124868730_124868854_124870876_124871012_124871289_124871507_124873304_124873425_124874969_124875116_124875953_124876107_124877860_124878122_124878776_124878950_124880371_124880466_124880877_124881046_124881695_124881885_124882801_124882974_124885718_124885923_124886277_124886359_124888512_124888711_124889624_124889787_124890885_124891061_124891613_124891796_124893070_124893208_124894245_124894464_124894623_124894846_124895052_124895201_124896194_124896475_124896893_124897124_124898286_124898561_124899915_124900021_124900361_124900517_124901497_124901653_124903930_124904115_124905079_124905281_124905498_124905709_124905836_124905933_124906588_124906761_124907091_124907224_124907390_124907603_124907696_124907865_124909513_124909695_124910488_124910635_124911042
ENSMUSG00000038013.15_0	chr11	+	5479	8	FSM	ENSMUSG00000038013.15	ENSMUST00000037480.9	7011	8	8	1524	8	-1524	multi-exon	FALSE	canonical	2	8	junction_1	4.16986271980755	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACCGCTGTTTCCTTTCT	950	False	NA	11	True	ATTAAA	-11	NA	98754471	98794342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98754729_98775799_98775931_98781525_98781659_98782321_98782439_98782888_98783546_98786942_98787153_98789556_98789659_98790470
ENSMUSG00000038013.15_10	chr11	+	4061	3	ISM	ENSMUSG00000038013.15	ENSMUST00000037480.9	7011	8	32604	1522	5069	-1522	3prime_fragment	FALSE	canonical	3	11	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCGCTGTTTCCTTTCTGC	NA	False	NA	13	True	ATTAAA	-13	NA	98787067	98794344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98787153_98789556_98789659_98790470
ENSMUSG00000038013.15_11	chr11	+	2942	1	ISM	ENSMUSG00000038013.15	ENSMUST00000037480.9	7011	8	37349	1112	9814	-1112	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAACAAAAAG	NA	False	NA	NA	False	ATTAAA	-5	NA	98791812	98794754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98791800_98794800
ENSMUSG00000038013.15_16	chr11	+	4387	2	ISM	ENSMUSG00000038013.15	ENSMUST00000037480.9	7011	8	35092	1112	7557	-1112	3prime_fragment	FALSE	canonical	3	12	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAACAAAAAG	NA	False	NA	NA	False	ATTAAA	-5	NA	98789555	98794754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98789659_98790470
ENSMUSG00000038013.15_5	chr11	+	5305	8	NIC	ENSMUSG00000038013.15	novel	1846	4	NA	NA	-57	-1522	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	4.94046184736874	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCGCTGTTTCCTTTCTGC	1364	False	NA	13	True	ATTAAA	-13	NA	98754885	98794344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_98754967_98775799_98775931_98781525_98781659_98782321_98782439_98782888_98783546_98786942_98787153_98789556_98789659_98790470
ENSMUSG00000038013.15_6	chr11	+	5573	7	ISM	ENSMUSG00000038013.15	ENSMUST00000037480.9	7011	8	21397	1112	-6138	-1112	3prime_fragment	FALSE	canonical	2	8	junction_4	4.05859855396197	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAACAAAAAG	9530	False	NA	NA	False	ATTAAA	-5	NA	98775860	98794754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98775931_98781525_98781659_98782321_98782439_98782888_98783546_98786942_98787153_98789556_98789659_98790470
ENSMUSG00000038013.15_7	chr11	+	5014	6	ISM	ENSMUSG00000038013.15	ENSMUST00000037480.9	7011	8	27138	1525	-397	-1525	3prime_fragment	FALSE	canonical	2	8	junction_3	4.35430821141545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAACCGCTGTTTCCTTTC	5582	False	NA	10	True	ATTAAA	-10	NA	98781601	98794341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98781659_98782321_98782439_98782888_98783546_98786942_98787153_98789556_98789659_98790470
ENSMUSG00000038013.15_9	chr11	+	5059	4	ISM	ENSMUSG00000038013.15	ENSMUST00000037480.9	7011	8	28612	1119	1077	-1119	3prime_fragment	FALSE	canonical	2	8	junction_1	1.69967317119759	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACCTTAAAAGGAAAAAAA	7056	False	NA	NA	False	NA	NA	NA	98783075	98794747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98783546_98786942_98787153_98789556_98789659_98790470
ENSMUSG00000038014.8_0	chr13	-	5144	18	FSM	ENSMUSG00000038014.8	ENSMUST00000060805.7	5105	18	-42	3	-42	-3	multi-exon	FALSE	canonical	3	179	junction_8	31.720775722809	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTATGGTGTGGCTT	6341	False	NA	-21	True	AATAAA	-18	NA	49121535	49032697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_49034572_49038748_49038846_49039212_49039355_49042599_49042738_49043230_49043415_49045356_49045567_49051135_49051251_49055533_49055784_49063731_49063907_49066332_49066561_49068337_49068426_49075157_49075442_49075628_49075727_49085772_49085870_49087425_49087555_49099417_49099501_49102532_49102780_49120830
ENSMUSG00000038014.8_3	chr13	-	2671	3	ISM	ENSMUSG00000038014.8	ENSMUST00000060805.7	5105	18	81582	2	81582	-2	3prime_fragment	FALSE	canonical	3	288	junction_2	4.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGTATGGTGTGGCTTT	4011	False	NA	-20	True	AATAAA	-19	NA	49039911	49032696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_49034572_49038748_49038846_49039212
ENSMUSG00000038014.8_49	chr13	-	2376	10	ISM	ENSMUSG00000038014.8	ENSMUST00000060805.7	5105	18	-45	30798	-45	-30798	5prime_fragment	FALSE	canonical	3	223	junction_3	19.2725737452327	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGACGACATTACTCT	6338	False	NA	NA	False	AATAAA	-20	NA	49121538	49063492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_49063907_49066332_49066561_49068337_49068426_49075157_49075442_49075628_49075727_49085772_49085870_49087425_49087555_49099417_49099501_49102532_49102780_49120830
ENSMUSG00000038014.8_9	chr13	-	1606	1	ISM	ENSMUSG00000038014.8	ENSMUST00000060805.7	5105	18	87191	2	87191	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGTATGGTGTGGCTTT	9620	False	NA	-20	True	AATAAA	-19	NA	49034302	49032696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_49032700_49034300
ENSMUSG00000038020.6_0	chr11	+	4083	15	FSM	ENSMUSG00000038020.6	ENSMUST00000107479.3	4855	15	71	701	71	-3	multi-exon	TRUE	non_canonical	0	0	junction_2	1.24539969815448	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACCAACTTCCTTATGT	NA	False	NA	NA	False	AATACA	-10	NA	98727681	98743822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98728500_98731085_98731165_98733020_98733157_98733383_98733482_98736700_98736814_98736947_98737116_98737901_98738000_98738112_98738236_98739943_98740123_98740200_98740292_98740754_98740806_98740919_98741008_98741190_98741256_98741610_98741666_98741901
ENSMUSG00000038020.6_2	chr11	+	2104	3	FSM	ENSMUSG00000038020.6	ENSMUST00000139889.2	2077	3	-23	-4	-23	4	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCCTTATGTTCTCCGT	214	False	NA	NA	False	AATACA	-17	NA	98741134	98743829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98741256_98741610_98741666_98741901
ENSMUSG00000038022.12_3	chr6	+	2668	18	FSM	ENSMUSG00000038022.12	ENSMUST00000053094.8	4270	18	57	1545	57	362	multi-exon	TRUE	canonical	1	1	junction_8	4.83570915636814	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGGACTGTGGTTGGT	NA	False	NA	NA	False	CATAAA	-27	NA	55180424	55295662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_55180555_55188234_55188355_55193491_55193728_55195206_55195454_55200982_55201354_55232595_55232652_55237519_55237627_55239703_55239821_55240760_55240850_55253538_55253641_55255031_55255096_55256069_55256136_55261730_55261799_55274672_55274737_55277927_55278090_55285139_55285321_55286246_55286320_55295247
ENSMUSG00000038023.13_0	chr5	+	3521	20	FSM	ENSMUSG00000038023.13	ENSMUST00000037865.13	5345	20	16	1808	3	508	multi-exon	TRUE	canonical	3	142	junction_14	17.8821937464506	357	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTTCAGGTTAGCTGA	NA	False	NA	28	True	AATAAA	-26	NA	124767132	124799711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124767356_124770817_124770897_124773952_124774051_124775423_124775562_124777132_124777222_124779407_124779535_124782904_124782988_124783884_124783979_124784543_124784757_124789272_124789424_124789764_124789902_124790144_124790333_124790431_124790523_124791177_124791297_124793368_124793580_124794949_124795070_124795502_124795623_124796112_124796231_124796914_124797087_124798761
ENSMUSG00000038024.18_0	chr4	+	7770	32	NIC	ENSMUSG00000038024.18	novel	7940	33	NA	NA	5	-18	combination_of_known_junctions	FALSE	canonical	3	33	junction_19	10.1503781653229	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAATCTCAAATT	8176	False	NA	NA	False	ATTAAA	-8	NA	86666796	86768822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_86667150_86692474_86692797_86695949_86696203_86698071_86698142_86699778_86699949_86704284_86704524_86707061_86707129_86708140_86708200_86709563_86709709_86713358_86713535_86716280_86716382_86717589_86717809_86721143_86721290_86723606_86723643_86723731_86723863_86725664_86725798_86729649_86729857_86730561_86730691_86731629_86731775_86738098_86738219_86739563_86739708_86743154_86744318_86746204_86746386_86747156_86747267_86747727_86747904_86754616_86754800_86755617_86755814_86757868_86758115_86759221_86759340_86763063_86763215_86766194_86766260_86767006
ENSMUSG00000038024.18_1	chr4	+	7920	33	FSM	ENSMUSG00000038024.18	ENSMUST00000082026.14	7940	33	2	18	2	-18	multi-exon	FALSE	canonical	3	25	junction_19	11.8372756050537	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAATCTCAAATT	8173	False	NA	NA	False	ATTAAA	-8	NA	86666793	86768822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_86667150_86692474_86692797_86695949_86696203_86698071_86698142_86699778_86699949_86704284_86704524_86707061_86707129_86708140_86708200_86709563_86709709_86713358_86713535_86716280_86716382_86717589_86717809_86721143_86721290_86723606_86723643_86723731_86723863_86725664_86725798_86729649_86729857_86730561_86730691_86731629_86731775_86732018_86732166_86738098_86738219_86739563_86739708_86743154_86744318_86746204_86746386_86747156_86747267_86747727_86747904_86754616_86754800_86755617_86755814_86757868_86758115_86759221_86759340_86763063_86763215_86766194_86766260_86767006
ENSMUSG00000038024.18_18	chr4	+	4615	13	ISM	ENSMUSG00000038024.18	ENSMUST00000142837.3	5870	31	45658	-1527	42070	-21	3prime_fragment	FALSE	canonical	3	53	junction_10	6.72629582724069	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAGAAAAATCTCAA	NA	False	NA	NA	False	ATTAAA	-5	NA	86738149	86768819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_86738219_86739563_86739708_86743154_86744318_86746204_86746386_86747156_86747267_86747727_86747904_86754616_86754800_86755617_86755814_86757868_86758115_86759221_86759340_86763063_86763215_86766194_86766260_86767006
ENSMUSG00000038024.18_19	chr4	+	3744	11	ISM	ENSMUSG00000038024.18	ENSMUST00000142837.3	5870	31	51321	-1527	47733	-21	3prime_fragment	FALSE	canonical	3	53	junction_8	6.70522184569608	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAGAAAAATCTCAA	NA	False	NA	NA	False	ATTAAA	-5	NA	86743812	86768819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_86744318_86746204_86746386_86747156_86747267_86747727_86747904_86754616_86754800_86755617_86755814_86757868_86758115_86759221_86759340_86763063_86763215_86766194_86766260_86767006
ENSMUSG00000038024.18_25	chr4	+	3567	3	ISM	ENSMUSG00000038024.18	ENSMUST00000142837.3	5870	31	69050	-1543	65462	-5	3prime_fragment	FALSE	canonical	3	62	junction_1	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATTTGGTGTCTGTTGA	NA	False	NA	NA	False	AATAAA	-11	NA	86761541	86768835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_86763215_86766194_86766260_86767006
ENSMUSG00000038024.18_26	chr4	+	1663	1	ISM	ENSMUSG00000038024.18	ENSMUST00000082026.14	7940	33	100374	12	71086	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCTCAAATTTGGTGT	NA	False	NA	NA	False	AATAAA	-4	NA	86767165	86768828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_86767200_86768800
ENSMUSG00000038025.9_0	chr13	-	5263	22	FSM	ENSMUSG00000038025.9	ENSMUST00000035540.9	5494	22	226	5	226	-5	multi-exon	FALSE	canonical	3	26	junction_1	5.86043268042677	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGCCATGTGTCTGTCG	NA	False	NA	-5	True	AGTAAA	-18	NA	49024369	48955230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_48957164_48957810_48958199_48958706_48958817_48959300_48959397_48961080_48961353_48966384_48966546_48967178_48967250_48967341_48967521_48969430_48969547_48969910_48970031_48970981_48971342_48971777_48971868_48973015_48973108_48973516_48973624_48974001_48974090_48975006_48975170_48976424_48976612_48979527_48979670_48982261_48982423_48985479_48985595_48988685_48988772_49024143
ENSMUSG00000038025.9_3	chr13	-	1204	1	ISM	ENSMUSG00000038025.9	ENSMUST00000035540.9	5494	22	68161	5	68161	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGCCATGTGTCTGTCG	NA	False	NA	-5	True	AGTAAA	-18	NA	48956434	48955230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_48955200_48956400
ENSMUSG00000038025.9_5	chr13	-	2650	5	ISM	ENSMUSG00000038025.9	ENSMUST00000035540.9	5494	22	63394	3	63394	-3	3prime_fragment	FALSE	canonical	3	26	junction_1	6.57647321898295	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCATGTGTCTGTCGTG	7556	False	NA	-3	True	AGTAAA	-20	NA	48961201	48955228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_48957164_48957810_48958199_48958706_48958817_48959300_48959397_48961080
ENSMUSG00000038025.9_6	chr13	-	4439	17	ISM	ENSMUSG00000038025.9	ENSMUST00000035540.9	5494	22	48078	5	48078	-5	3prime_fragment	TRUE	canonical	3	26	junction_1	6.44174617242872	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGCCATGTGTCTGTCG	NA	False	NA	-5	True	AGTAAA	-18	NA	48976517	48955230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_48957164_48957810_48958199_48958706_48958817_48959300_48959397_48961080_48961353_48966384_48966546_48967178_48967250_48967341_48967521_48969430_48969547_48969910_48970031_48970981_48971342_48971777_48971868_48973015_48973108_48973516_48973624_48974001_48974090_48975006_48975170_48976424
ENSMUSG00000038028.10_0	chr6	-	1280	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	17	2354	17	411	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGTGTTCAGAGTGAAGC	NA	False	NA	-10	True	AAGAAA	-39	NA	127086496	127064432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
ENSMUSG00000038028.10_2	chr6	-	2686	1	ISM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	21741	8	21741	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGGATGTTTAGGTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	127064772	127062086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_127062100_127064800
ENSMUSG00000038034.16_3	chr1	+	2412	6	ISM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	18	8	18	-2	intron_retention	FALSE	canonical	3	675	junction_3	48.3553513067582	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCGAGGCCTGTTGTGT	3761	False	NA	11	True	AATAAA	-11	NA	172139951	172147400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859
ENSMUSG00000038034.16_4	chr1	+	2250	7	FSM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	20	8	20	-2	multi-exon	FALSE	canonical	3	675	junction_3	44.2329691017408	1090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCGAGGCCTGTTGTGT	3763	False	NA	11	True	AATAAA	-11	NA	172139953	172147400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859_172146991_172147150
ENSMUSG00000038037.6_0	chr16	-	1294	1	NIC	ENSMUSG00000038037.6	novel	2908	2	NA	NA	423	-1577	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAACAAAGATTCCTA	NA	False	NA	NA	False	AATAAA	-24	NA	10602977	10601683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_10601700_10603000
ENSMUSG00000038037.6_1	chr16	-	1205	2	FSM	ENSMUSG00000038037.6	ENSMUST00000038099.6	2785	2	3	1577	3	-1577	multi-exon	FALSE	canonical	3	9	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAACAAAGATTCCTA	NA	False	NA	NA	False	AATAAA	-24	NA	10603397	10601683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_10602786_10603294
ENSMUSG00000038039.14_0	chr10	+	6525	23	FSM	ENSMUSG00000038039.14	ENSMUST00000057659.14	6547	23	12	10	1	0	multi-exon	FALSE	canonical	3	66	junction_12	11.5498381084143	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATTGCATTTTCATGAC	NA	False	NA	2	True	ATTAAA	-12	NA	58091330	58141411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_58091394_58091650_58091705_58092641_58092727_58094062_58094131_58103788_58103894_58105083_58107529_58108154_58108228_58110557_58110659_58110757_58110857_58112399_58112520_58114608_58114774_58116413_58116519_58117178_58117342_58121764_58121866_58121954_58122033_58122963_58123102_58124454_58124577_58126121_58126299_58128386_58128605_58130532_58130728_58131909_58132062_58134485_58134688_58139915
ENSMUSG00000038039.14_7	chr10	+	6466	22	ISM	ENSMUSG00000038039.14	ENSMUST00000057659.14	6547	23	330	8	-64	0	3prime_fragment	FALSE	canonical	3	66	junction_11	11.5301045380168	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGCATTTTCATGACTA	NA	False	NA	4	True	ATTAAA	-14	NA	58091648	58141413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_58091705_58092641_58092727_58094062_58094131_58103788_58103894_58105083_58107529_58108154_58108228_58110557_58110659_58110757_58110857_58112399_58112520_58114608_58114774_58116413_58116519_58117178_58117342_58121764_58121866_58121954_58122033_58122963_58123102_58124454_58124577_58126121_58126299_58128386_58128605_58130532_58130728_58131909_58132062_58134485_58134688_58139915
ENSMUSG00000038039.14_8	chr10	+	4535	18	ISM	ENSMUSG00000038039.14	ENSMUST00000057659.14	6547	23	15381	9	-2568	1	3prime_fragment	FALSE	canonical	3	66	junction_7	11.8309897446959	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGCATTTTCATGACT	NA	False	NA	3	True	ATTAAA	-13	NA	58106699	58141412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_58107529_58108154_58108228_58110557_58110659_58110757_58110857_58112399_58112520_58114608_58114774_58116413_58116519_58117178_58117342_58121764_58121866_58121954_58122033_58122963_58123102_58124454_58124577_58126121_58126299_58128386_58128605_58130532_58130728_58131909_58132062_58134485_58134688_58139915
ENSMUSG00000038042.12_0	chr13	-	4008	3	FSM	ENSMUSG00000038042.12	ENSMUST00000221887.2	1072	3	-1455	-1481	-1455	-8	multi-exon	FALSE	canonical	3	14	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACCACTACCCCGTCTT	NA	False	NA	NA	False	AATAAA	-11	NA	48738493	48731355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_48733320_48734230_48734342_48736560
ENSMUSG00000038042.12_1	chr13	-	4310	10	FSM	ENSMUSG00000038042.12	ENSMUST00000035824.11	4402	10	78	14	-5	-14	multi-exon	FALSE	canonical	3	9	junction_8	3.87138919781874	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGACCAACCACTACCC	NA	False	NA	NA	False	AATAAA	-5	NA	48779062	48731361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_48733320_48734230_48734342_48736560_48736747_48739407_48740655_48742595_48742734_48743762_48743882_48744101_48744183_48745961_48746134_48759748_48759837_48778852
ENSMUSG00000038042.12_16	chr13	-	2957	5	NIC	ENSMUSG00000038042.12	novel	1873	7	NA	NA	16	-2842	intron_retention	FALSE	canonical	3	9	junction_3	3.83242742918897	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTCTACAAGTGTTT	NA	False	NA	NA	False	AATATA	-35	NA	48779124	48742287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_48742734_48743762_48743882_48744101_48746134_48759748_48759837_48778852
ENSMUSG00000038042.12_17	chr13	-	4499	11	FSM	ENSMUSG00000038042.12	ENSMUST00000222028.2	3164	11	-2	-1333	-2	-5	multi-exon	FALSE	canonical	0	0	junction_8	6.6340033162488	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACTACCCCGTCTTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	48779059	48731352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_48733320_48734230_48734342_48736560_48736747_48739407_48740655_48742595_48742734_48743762_48743882_48744101_48744183_48745961_48746134_48751233_48751417_48759748_48759837_48778852
ENSMUSG00000038042.12_2	chr13	-	6047	9	NIC	ENSMUSG00000038042.12	novel	4402	10	NA	NA	-19	2	intron_retention	TRUE	canonical	3	9	junction_7	4.04467242184086	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCCGTCTTGTGGTTCTTC	NA	False	NA	NA	False	AATAAA	-21	NA	48779004	48731345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_48733320_48734230_48734342_48736560_48736747_48739407_48740655_48742595_48742734_48743762_48743882_48744101_48746134_48759748_48759837_48778852
ENSMUSG00000038042.12_4	chr13	-	1492	1	ISM	ENSMUSG00000038042.12	ENSMUST00000035824.11	4402	10	46296	5	4194	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACTACCCCGTCTTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	48732844	48731352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_48731400_48732800
ENSMUSG00000038045.15_14	chr17	-	4091	4	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	606	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	95.3636315490461	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACATTGCTGTCAGTGT	NA	False	NA	-9	True	ATTAAA	-23	NA	79201923	79192318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_79192646_79196359_79196517_79198274_79199066_79199107
ENSMUSG00000038045.15_2	chr17	-	1137	4	ISM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	0	-7	0	7	intron_retention	FALSE	canonical	3	141	junction_3	32.273139846559	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACATTGCTGTCAGTGT	NA	False	NA	-9	True	ATTAAA	-23	NA	79202529	79192318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971
ENSMUSG00000038045.15_3	chr17	-	2969	4	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	0	4	intron_retention	FALSE	canonical	3	19	junction_3	86.5678924313166	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGGAACATTGCTGTCAG	NA	False	NA	-12	True	ATTAAA	-20	NA	79202529	79192321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79200136
ENSMUSG00000038045.15_4	chr17	-	774	5	FSM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	-1	-9	-1	9	multi-exon	FALSE	canonical	3	72	junction_4	54.3570372628973	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATTGCTGTCAGTGTGT	NA	False	NA	-7	True	ATTAAA	-25	NA	79202530	79192316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79202464
ENSMUSG00000038045.15_5	chr17	-	889	2	NIC	ENSMUSG00000038045.15	novel	764	5	NA	NA	-1	10	intron_retention	FALSE	canonical	3	29	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTGCTGTCAGTGTGTT	NA	False	NA	-6	True	ATTAAA	-26	NA	79202530	79192315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_79192646_79201971
ENSMUSG00000038045.15_7	chr17	-	2245	3	ISM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	2496	-9	2496	9	3prime_fragment	FALSE	canonical	3	178	junction_2	21	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATTGCTGTCAGTGTGT	NA	False	NA	-7	True	ATTAAA	-25	NA	79200033	79192316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_79192646_79196359_79196517_79198274
ENSMUSG00000038046.5_1	chr11	+	1449	4	FSM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	42	19	21	-19	multi-exon	FALSE	canonical	3	128	junction_1	6.53197264742181	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCTTTTTCATTTTAC	592	False	NA	4	True	ATTAAA	-12	NA	76134582	76141426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_76134913_76135104_76135350_76138172_76138341_76140720
ENSMUSG00000038046.5_7	chr11	+	1638	3	NIC	ENSMUSG00000038046.5	novel	1510	4	NA	NA	24	-19	intron_retention	FALSE	canonical	3	136	junction_2	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCTTTTTCATTTTAC	595	False	NA	4	True	ATTAAA	-12	NA	76134585	76141426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_76135350_76138172_76138341_76140720
ENSMUSG00000038047.19_0	chr4	-	3935	17	FSM	ENSMUSG00000038047.19	ENSMUST00000070607.9	6158	17	27	2196	-9	-2196	multi-exon	TRUE	canonical	3	127	junction_2	24.1993672437938	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGCCTGACTAGAAGAG	NA	False	NA	-50	True	AATAAA	-13	NA	86530265	86499287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_86500256_86501117_86502111_86503564_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
ENSMUSG00000038047.19_2	chr4	-	3757	2	ISM	ENSMUSG00000038047.19	ENSMUST00000070607.9	6158	17	28579	3	28543	-3	3prime_fragment	FALSE	canonical	3	217	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTGGAATTCCCTGT	NA	False	NA	-10	True	AATAAA	-13	NA	86501713	86497094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_86500256_86501117
ENSMUSG00000038047.19_3	chr4	-	1676	1	ISM	ENSMUSG00000038047.19	ENSMUST00000070607.9	6158	17	31522	3	31486	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTGGAATTCCCTGT	NA	False	NA	-10	True	AATAAA	-13	NA	86498770	86497094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_86497100_86498800
ENSMUSG00000038047.19_41	chr4	-	3362	15	FSM	ENSMUSG00000038047.19	ENSMUST00000128381.8	2302	15	27	-1087	-9	1087	multi-exon	FALSE	canonical	3	135	junction_12	19.1012340663409	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTGTGTTTGGGCATAT	NA	False	NA	NA	False	AATAAA	-14	NA	86530265	86502176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
ENSMUSG00000038055.13_0	chr16	-	1413	2	FSM	ENSMUSG00000038055.13	ENSMUST00000038281.6	1389	2	-30	6	-30	-6	multi-exon	FALSE	canonical	3	61	junction_1	0	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAATTTCCTTTGCCTTG	NA	False	NA	-6	True	ATTAAA	-14	NA	10360948	10348076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_10348677_10360135
ENSMUSG00000038056.16_1	chr5	-	1679	1	ISM	ENSMUSG00000038056.16	ENSMUST00000174734.8	6443	18	26599	0	7924	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAATGTGCACTGTGTTC	7256	False	NA	-4	True	AATAAA	-14	NA	25478474	25476795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_25476800_25478500
ENSMUSG00000038056.16_10	chr5	-	7792	23	NIC	ENSMUSG00000038056.16	novel	14967	59	NA	NA	-1349	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_19	15.4497318706841	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAATGTGCACTGTGTTC	NA	False	NA	-4	True	AATAAA	-14	NA	25514897	25476795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706_25495886_25497811_25497960_25498104_25498247_25499554_25499720_25500395_25500609_25503867_25505575_25507703_25507937_25509675_25509740_25510906_25510986_25513436_25513549_25514597
ENSMUSG00000038056.16_15	chr5	-	3540	8	ISM	ENSMUSG00000038056.16	ENSMUST00000174734.8	6443	18	15175	4	-3500	-4	3prime_fragment	FALSE	canonical	2	6	junction_5	17.9033687401254	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTATAGAATGTGCACTGT	8895	False	NA	-8	True	AATAAA	-10	NA	25489898	25476799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486658_25486802_25488101_25488239_25489064
ENSMUSG00000038056.16_17	chr5	-	2658	7	ISM	ENSMUSG00000038056.16	ENSMUST00000172556.8	6486	20	25350	-628	-1800	0	3prime_fragment	FALSE	canonical	3	48	junction_5	4.8904669170404	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAATGTGCACTGTGTTC	8173	False	NA	-4	True	AATAAA	-14	NA	25488198	25476795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101
ENSMUSG00000038056.16_19	chr5	-	10199	23	NIC	ENSMUSG00000038056.16	novel	14967	59	NA	NA	-6405	-4	combination_of_known_junctions	FALSE	canonical	3	9	junction_15	16.92038967568	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTATAGAATGTGCACTGT	9677	False	NA	-8	True	AATAAA	-10	NA	25519953	25476799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706_25495886_25497811_25497960_25498104_25498247_25503867_25505575_25507703_25507937_25509675_25509740_25510906_25510986_25513436_25513549_25514597_25516418_25518253_25518547_25518977
ENSMUSG00000038056.16_2	chr5	-	7391	21	NIC	ENSMUSG00000038056.16	novel	6486	20	NA	NA	-1326	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_15	16.1940575520776	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAATGTGCACTGTGTTC	NA	False	NA	-4	True	AATAAA	-14	NA	25514874	25476795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706_25495886_25497811_25497960_25498104_25498247_25503867_25505575_25507703_25507937_25509675_25509740_25510906_25510986_25513436_25513549_25514597
ENSMUSG00000038056.16_20	chr5	-	7124	19	NIC	ENSMUSG00000038056.16	novel	14967	59	NA	NA	-2751	-1	combination_of_known_splicesites	FALSE	canonical	3	17	junction_16	13.8251872489719	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGAATGTGCACTGTGTT	NA	False	NA	-5	True	AATAAA	-13	NA	25507824	25476796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706_25495886_25497811_25497960_25498104_25498247_25499554_25499720_25500395_25500609_25503867_25505575_25507703
ENSMUSG00000038056.16_3	chr5	-	3348	8	ISM	ENSMUSG00000038056.16	ENSMUST00000172556.8	6486	20	23834	-628	-3316	0	3prime_fragment	FALSE	canonical	3	48	junction_5	5.06689938599091	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAATGTGCACTGTGTTC	9079	False	NA	-4	True	AATAAA	-14	NA	25489714	25476795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064
ENSMUSG00000038056.16_39	chr5	-	3895	9	ISM	ENSMUSG00000038056.16	ENSMUST00000172556.8	6486	20	21416	-624	-5734	-4	3prime_fragment	FALSE	canonical	3	40	junction_8	6.75925291729789	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTATAGAATGTGCACTGT	6661	False	NA	-8	True	AATAAA	-10	NA	25492132	25476799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064_25490182_25492048
ENSMUSG00000038056.16_4	chr5	-	6036	18	NIC	ENSMUSG00000038056.16	novel	6443	18	NA	NA	467	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_16	13.6211722028587	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAATGTGCACTGTGTTC	NA	False	NA	-4	True	AATAAA	-14	NA	25504606	25476795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706_25495886_25497811_25497960_25498104_25498247_25499554_25499720_25500395_25500609_25503867
ENSMUSG00000038056.16_8	chr5	-	2749	4	ISM	ENSMUSG00000038056.16	ENSMUST00000174734.8	6443	18	23331	0	4656	0	3prime_fragment	FALSE	canonical	3	56	junction_2	3.39934634239519	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAATGTGCACTGTGTTC	3988	False	NA	-4	True	AATAAA	-14	NA	25481742	25476795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137
ENSMUSG00000038056.16_9	chr5	-	4595	13	ISM	ENSMUSG00000038056.16	ENSMUST00000172556.8	6486	20	17693	-624	2522	-4	3prime_fragment	FALSE	canonical	3	33	junction_12	9.64473085852235	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTATAGAATGTGCACTGT	2938	False	NA	-8	True	AATAAA	-10	NA	25495855	25476799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706
ENSMUSG00000038057.5_0	chr11	+	1089	2	FSM	ENSMUSG00000038057.5	ENSMUST00000040806.5	581	2	-516	8	-516	-8	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGCATGAGAGTGGAGT	NA	False	NA	NA	False	AATAAA	-7	NA	76107917	76109484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_76108575_76109052
ENSMUSG00000038058.15_1	chr6	-	2771	9	ISM	ENSMUSG00000038058.15	ENSMUST00000168172.4	4064	12	27405	4	-803	-4	3prime_fragment	FALSE	canonical	3	14	junction_4	3.21859829739593	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCACTGTTTCTAATGGC	NA	False	NA	NA	False	AATAAA	-11	NA	54921241	54900937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_54901995_54905019_54905104_54907160_54907245_54910544_54910629_54911379_54911464_54914338_54914423_54915122_54915207_54916288_54916373_54920115
ENSMUSG00000038058.15_3	chr6	-	4132	12	FSM	ENSMUSG00000038058.15	ENSMUST00000060655.15	4315	12	179	4	179	-4	multi-exon	FALSE	canonical	2	6	junction_10	5.88175495258975	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCACTGTTTCTAATGGC	NA	False	NA	NA	False	AATAAA	-11	NA	54949418	54900937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_54901995_54905019_54905104_54907160_54907245_54910544_54910629_54911379_54911464_54914338_54914423_54915122_54915207_54916288_54916373_54920115_54921941_54924933_54925109_54926416_54926739_54949253
ENSMUSG00000038058.15_5	chr6	-	4281	12	NIC	ENSMUSG00000038058.15	novel	4064	12	NA	NA	-18	-4	combination_of_known_junctions	FALSE	canonical	1	1	junction_11	7.53723539206332	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCACTGTTTCTAATGGC	NA	False	NA	NA	False	AATAAA	-11	NA	54941691	54900937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_54901995_54905019_54905104_54907160_54907245_54910544_54910629_54911379_54911464_54914338_54914423_54915122_54915207_54916288_54916373_54920115_54921941_54924933_54925109_54926416_54926739_54941377
ENSMUSG00000038058.15_6	chr6	-	968	1	ISM	ENSMUSG00000038058.15	ENSMUST00000168172.4	4064	12	46741	4	3178	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCACTGTTTCTAATGGC	NA	False	NA	NA	False	AATAAA	-11	NA	54901905	54900937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_54900900_54901900
ENSMUSG00000038059.8_0	chr18	-	1475	2	FSM	ENSMUSG00000038059.8	ENSMUST00000042710.8	1990	2	455	60	44	-60	multi-exon	FALSE	canonical	3	18	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTTTCTTTGAAGAACA	NA	False	NA	-13	True	AATAAA	-21	NA	60634604	60607322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_60608658_60634464
ENSMUSG00000038059.8_1	chr18	-	1453	2	NNC	ENSMUSG00000038059.8	novel	1990	2	NA	NA	11807	-7	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCAACTGTGTTTTGTTT	7262	False	NA	-5	True	GATAAA	-8	NA	60622841	60607269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_60608658_60622776
ENSMUSG00000038065.14_0	chr6	+	5198	3	FSM	ENSMUSG00000038065.14	ENSMUST00000190641.7	5303	3	102	3	-28	-3	multi-exon	FALSE	canonical	3	54	junction_2	0.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTATTTGTCGTCTTTA	NA	False	NA	4	True	ATTAAA	-16	NA	54658710	54680833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_54658917_54665990_54666114_54675964
ENSMUSG00000038065.14_1	chr6	+	819	2	FSM	ENSMUSG00000038065.14	ENSMUST00000185518.2	645	2	-98	-76	-50	76	multi-exon	TRUE	canonical	3	55	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCTCAGGATTTTGGACT	NA	False	NA	NA	False	CATAAA	-11	NA	54658688	54666581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_54658917_54665990
ENSMUSG00000038065.14_2	chr6	+	2389	1	ISM	ENSMUSG00000038065.14	ENSMUST00000190641.7	5303	3	19837	2	19659	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTATTTGTCGTCTTTAC	NA	False	NA	5	True	ATTAAA	-17	NA	54678445	54680834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_54678400_54680800
ENSMUSG00000038068.16_0	chr13	+	4601	8	FSM	ENSMUSG00000038068.16	ENSMUST00000068891.12	4640	8	31	8	31	-8	multi-exon	FALSE	canonical	1	1	junction_6	2.49079939630896	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAACCAAACGTGTTAGC	NA	False	NA	NA	False	AATAAA	-8	NA	47276162	47401459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_47276350_47360835_47361027_47373969_47374075_47382415_47382477_47390878_47391078_47393192_47393338_47396339_47396430_47397836
ENSMUSG00000038068.16_5	chr13	+	3467	1	ISM	ENSMUSG00000038068.16	ENSMUST00000068891.12	4640	8	121861	8	50692	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAACCAAACGTGTTAGC	NA	False	NA	NA	False	AATAAA	-8	NA	47397992	47401459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_47398000_47401500
ENSMUSG00000038069.7_0	chr8	-	2608	3	FSM	ENSMUSG00000038069.7	ENSMUST00000212175.2	3393	3	2	783	2	-783	multi-exon	FALSE	canonical	3	65	junction_1	31	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTGTTTTTTTTT	NA	False	NA	-3	True	ATTAAA	-25	NA	48166964	48163262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_48165330_48165922_48166054_48166554
ENSMUSG00000038069.7_2	chr8	-	2575	3	FSM	ENSMUSG00000038069.7	ENSMUST00000038738.7	3464	3	5	884	4	-783	multi-exon	FALSE	canonical	3	60	junction_1	33.5	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTGTTTTTTTTT	NA	False	NA	-3	True	ATTAAA	-25	NA	48166962	48163262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_48165330_48165953_48166054_48166554
ENSMUSG00000038069.7_3	chr8	-	1934	1	ISM	ENSMUSG00000038069.7	ENSMUST00000038738.7	3464	3	1771	884	1770	-783	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTGTTTTTTTTT	NA	False	NA	-3	True	ATTAAA	-25	NA	48165196	48163262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_48163300_48165200
ENSMUSG00000038070.16_4	chr4	+	5436	26	FSM	ENSMUSG00000038070.16	ENSMUST00000047023.13	5528	26	83	9	-12	-5	multi-exon	FALSE	canonical	0	0	junction_2	2.67910432794246	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGATTCGGTGATGCTCA	NA	False	NA	NA	False	NA	NA	NA	84802628	85050149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_84803062_84806879_84806969_84865794_84865880_84874512_84874648_84875236_84875417_84889367_84889502_84892099_84892263_84897560_84897759_84912865_84913019_84914691_84914818_84923159_84923282_84924641_84924762_84952024_84952126_84964539_84964632_84967840_84968374_84981414_84981593_84985716_84985811_84985893_84986118_85010873_85011066_85014986_85015085_85016585_85016713_85018494_85018633_85018950_85019137_85033501_85033688_85036678_85036757_85048878
ENSMUSG00000038072.15_0	chr5	+	2536	12	FSM	ENSMUSG00000038072.15	ENSMUST00000045737.14	2552	12	8	8	8	-7	multi-exon	FALSE	canonical	3	184	junction_8	26.0711042984152	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGGATGTTTGACTCTT	NA	False	NA	5	True	AATAAA	-19	NA	25427887	25470908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_25428030_25452451_25452785_25453833_25453958_25455084_25455252_25457021_25457148_25459904_25460155_25462390_25462509_25463809_25463963_25466932_25467152_25468377_25468483_25469959_25470098_25470247
ENSMUSG00000038072.15_9	chr5	+	2362	11	FSM	ENSMUSG00000038072.15	ENSMUST00000114950.2	2493	11	123	8	123	-7	multi-exon	FALSE	canonical	3	184	junction_7	27.2288449993752	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGGATGTTTGACTCTT	NA	False	NA	5	True	AATAAA	-19	NA	25452483	25470908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_25452785_25453833_25453958_25455084_25455252_25457021_25457148_25459904_25460155_25462390_25462509_25463809_25463963_25466932_25467152_25468377_25468483_25469959_25470098_25470247
ENSMUSG00000038074.17_1	chr6	-	2693	4	FSM	ENSMUSG00000038074.17	ENSMUST00000046520.13	2694	4	-6	7	-6	-6	multi-exon	FALSE	canonical	3	17	junction_2	2.16024689946929	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACTAGTTTTGTACAT	NA	False	NA	-7	True	AATAAA	-12	NA	54570168	54554595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_54556672_54562787_54562916_54566257_54566410_54569831
ENSMUSG00000038079.15_0	chr1	-	1794	12	NIC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	21	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	59.5276170368229	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGCTTTATTAACTGAAG	4361	False	NA	-14	True	AATAAA	-20	NA	59158944	59139752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59157133_59157166_59158861
ENSMUSG00000038079.15_1	chr1	-	1762	11	NIC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	21	3	combination_of_known_splicesites	FALSE	canonical	3	28	junction_10	51.7934358775318	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGCTTTATTAACTGAAG	4361	False	NA	-14	True	AATAAA	-20	NA	59158944	59139752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59158861
ENSMUSG00000038079.15_2	chr1	-	1850	12	NIC	ENSMUSG00000038079.15	novel	1869	13	NA	NA	4	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	73.6320986419185	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGCTTTATTAACTGAAG	4056	False	NA	-14	True	AATAAA	-20	NA	59159249	59139752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59157133_59157166_59159110
ENSMUSG00000038079.15_3	chr1	-	1815	12	NIC	ENSMUSG00000038079.15	novel	1869	13	NA	NA	2	4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	73.814711069325	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAACTGAAGGTTTTTCC	4054	False	NA	-6	True	AATAAA	-28	NA	59159251	59139744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59157133_59157166_59159155
ENSMUSG00000038080.18_0	chr13	+	4254	21	FSM	ENSMUSG00000038080.18	ENSMUST00000037025.16	4987	21	50	683	-21	0	multi-exon	FALSE	canonical	3	35	junction_2	9.84682690007294	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTGTGTCAACCTCCTT	1211	False	NA	1	True	AATAAA	-11	NA	47197024	47238072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_47197147_47201378_47201479_47202653_47202782_47204085_47204176_47205264_47205377_47207094_47207212_47212251_47212291_47214228_47214458_47216433_47216619_47217529_47217707_47218046_47218122_47220920_47221059_47221939_47222112_47225367_47225496_47227186_47227319_47227829_47227905_47230858_47230976_47231743_47231870_47232658_47232776_47233911_47234065_47236350
ENSMUSG00000038080.18_16	chr13	+	4190	20	NIC	ENSMUSG00000038080.18	novel	4987	21	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	15.6886253058998	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTGTGTCAACCTCCTT	1236	False	NA	1	True	AATAAA	-11	NA	47197049	47238072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_47197147_47201378_47201479_47202653_47202782_47204085_47204176_47205264_47205377_47207094_47207212_47214228_47214458_47216433_47216619_47217529_47217707_47218046_47218122_47220920_47221059_47221939_47222112_47225367_47225496_47227186_47227319_47227829_47227905_47230858_47230976_47231743_47231870_47232658_47232776_47233911_47234065_47236350
ENSMUSG00000038084.17_0	chr16	+	3176	29	FSM	ENSMUSG00000038084.17	ENSMUST00000160597.8	6230	29	48	3006	2	-1	multi-exon	FALSE	canonical	3	145	junction_5	76.2263931339013	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTACGTGTGTTCCAGGCA	NA	False	NA	8	True	AATAAA	-18	NA	29398199	29470696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ENSMUSG00000038084.17_1	chr16	+	3231	30	FSM	ENSMUSG00000038084.17	ENSMUST00000038867.13	3230	30	1	-2	1	-1	multi-exon	TRUE	canonical	3	139	junction_4	99.4304230950511	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTACGTGTGTTCCAGGCA	NA	False	NA	8	True	AATAAA	-18	NA	29398198	29470696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ENSMUSG00000038084.17_2	chr16	+	3288	30	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	253	junction_5	68.2954691456644	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTACGTGTGTTCCAGGCA	NA	False	NA	8	True	AATAAA	-18	NA	29398198	29470696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ENSMUSG00000038084.17_5	chr16	+	3341	31	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	139	junction_4	92.8546295142155	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTACGTGTGTTCCAGGCA	NA	False	NA	8	True	AATAAA	-18	NA	29398199	29470696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ENSMUSG00000038084.17_96	chr16	+	2157	1	ISM	ENSMUSG00000038084.17	ENSMUST00000160597.8	6230	29	73095	299	35804	-299	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTATGATTCTATTATT	NA	False	NA	2	True	ATTAAA	-13	NA	29471246	29473403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_29471200_29473400
ENSMUSG00000038085.14_0	chr2	+	1994	13	FSM	ENSMUSG00000038085.14	ENSMUST00000037096.9	2277	13	282	1	3	-1	multi-exon	FALSE	canonical	1	1	junction_9	2.37463447479583	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTAGCTTCTCTGTTCTCTG	NA	False	NA	1	True	AATAAA	-11	NA	156154500	156217554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156154720_156161929_156161984_156170237_156170376_156175498_156175553_156177169_156177334_156180494_156180652_156181050_156181203_156183521_156183661_156195114_156195230_156207038_156207217_156209476_156209598_156215565_156215730_156217215
ENSMUSG00000038086.5_0	chr9	-	812	2	FSM	ENSMUSG00000038086.5	ENSMUST00000042790.5	773	2	-39	0	22	0	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTGCTGCTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	50663632	50662377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50663034_50663476
ENSMUSG00000038086.5_1	chr9	-	510	2	FSM	ENSMUSG00000038086.5	ENSMUST00000217159.2	552	2	42	0	-19	0	multi-exon	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTGCTGCTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	50663612	50662377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50662752_50663476
ENSMUSG00000038095.16_2	chr5	-	3528	1	ISM	ENSMUSG00000038095.16	ENSMUST00000065263.12	10071	32	53668	17	12563	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATGCACTTTGAGTT	NA	False	NA	32	True	AATAAA	-4	NA	124510309	124506781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_124506800_124510300
ENSMUSG00000038095.16_23	chr5	-	5578	31	NIC	ENSMUSG00000038095.16	novel	10161	32	NA	NA	1	1365	combination_of_known_junctions	FALSE	canonical	3	243	junction_29	68.980423954111	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACGAAGTGGACTCTTG	NA	False	NA	NA	False	AATAAA	-12	NA	124563654	124511229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563509
ENSMUSG00000038095.16_3	chr5	-	5684	32	FSM	ENSMUSG00000038095.16	ENSMUST00000199808.5	10161	32	19	4458	1	1366	multi-exon	FALSE	canonical	3	126	junction_29	101.260073560108	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACGAAGTGGACTCTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	124563654	124511228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563509
ENSMUSG00000038095.16_4	chr5	-	5577	31	Fusion	ENSMUSG00000038095.16_ENSMUSG00002076658.1	novel	4170	31	NA	NA	1	1367	multi-exon	TRUE	canonical	3	85	junction_29	90.1802454347218	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACGAAGTGGACTCTTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	124563654	124511227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124552461_124552591_124563509
ENSMUSG00000038095.16_7	chr5	-	5678	32	NIC	ENSMUSG00000038095.16	novel	10161	32	NA	NA	3	1365	combination_of_known_junctions	FALSE	canonical	3	34	junction_29	112.134674493331	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACGAAGTGGACTCTTG	NA	False	NA	NA	False	AATAAA	-12	NA	124563652	124511229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124551247_124551353_124552461_124552591_124563509
ENSMUSG00000038102.16_1	chr8	-	4310	30	FSM	ENSMUSG00000038102.16	ENSMUST00000039061.15	4332	30	8	14	8	0	multi-exon	TRUE	canonical	3	87	junction_18	20.4181612288351	274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCGTAAATACCTT	4062	False	NA	-11	True	AATAAA	-15	NA	47986494	47943163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
ENSMUSG00000038112.16_1	chr9	-	3528	20	FSM	ENSMUSG00000038112.16	ENSMUST00000119722.8	4224	20	70	626	10	-626	multi-exon	TRUE	canonical	1	1	junction_2	1.49421784911351	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGTGTTGGTCTTTTGT	NA	False	NA	0	True	ATTAAA	-19	NA	39514913	39499431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_39500422_39500938_39501066_39501896_39502028_39502499_39502605_39502698_39502798_39504091_39504340_39504624_39504726_39504966_39505132_39505836_39505952_39507890_39507971_39508350_39508496_39508903_39508993_39509209_39509380_39510573_39510689_39510940_39511117_39511234_39511458_39511763_39511967_39512075_39512134_39514510_39514608_39514822
ENSMUSG00000038116.17_0	chr2	+	5633	18	FSM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	102	2	-10	1	multi-exon	FALSE	canonical	3	289	junction_1	27.9815806939402	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTGTCAGTCACATTAC	NA	False	NA	7	True	AATAAA	-16	NA	156038663	156151870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136196_156138568_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
ENSMUSG00000038116.17_45	chr2	+	5582	17	ISM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	26691	1	453	-1	3prime_fragment	FALSE	canonical	3	304	junction_9	25.2387815424992	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCAGTCACATTACT	21	True	NA	8	True	AATAAA	-17	NA	156065252	156151871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136196_156138568_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
ENSMUSG00000038116.17_55	chr2	+	4894	13	ISM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	70748	0	4205	0	3prime_fragment	FALSE	canonical	3	304	junction_5	26.6930858713138	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCAGTCACATTACTG	NA	False	NA	9	True	AATAAA	-18	NA	156109309	156151872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136196_156138568_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
ENSMUSG00000038116.17_63	chr2	+	4085	9	ISM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	91329	3	5340	0	3prime_fragment	FALSE	canonical	3	304	junction_1	28.6006992921502	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGTGTCAGTCACATTA	NA	False	NA	6	True	AATAAA	-15	NA	156129890	156151869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_156130000_156134385_156134485_156135333_156135499_156136016_156136196_156138568_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
ENSMUSG00000038116.17_71	chr2	+	3173	3	ISM	ENSMUSG00000038116.17	ENSMUST00000152617.8	5524	17	106115	-2	6444	-1	3prime_fragment	FALSE	canonical	3	381	junction_1	9.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCAGTCACATTACT	544	False	NA	8	True	AATAAA	-17	NA	156144768	156151871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_156145100_156146550_156146735_156149213
ENSMUSG00000038116.17_72	chr2	+	1921	1	ISM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	111389	1	11626	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCAGTCACATTACT	5726	False	NA	8	True	AATAAA	-17	NA	156149950	156151871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_156150000_156151900
ENSMUSG00000038116.17_8	chr2	+	5549	17	NIC	ENSMUSG00000038116.17	novel	5737	18	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	82.3578320501457	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGTGTCAGTCACATTA	NA	False	NA	6	True	AATAAA	-15	NA	156038661	156151869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_156038718_156065254_156065370_156093695_156093868_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136196_156138568_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
ENSMUSG00000038119.16_11	chr9	+	2004	1	ISM	ENSMUSG00000038119.16	ENSMUST00000119129.10	7503	20	84083	8	48163	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTGCAGTCGCCTGTGAA	NA	False	NA	10	True	ATTAAA	-16	NA	35416936	35418940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_35416900_35418900
ENSMUSG00000038119.16_2	chr9	+	4486	20	FSM	ENSMUSG00000038119.16	ENSMUST00000119129.10	7503	20	-141	3158	-137	-3157	multi-exon	TRUE	canonical	1	3	junction_6	3.6977195937369	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTGGAAAACAGGGGATCA	NA	False	NA	NA	False	NA	NA	NA	35332712	35415790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_35333112_35363340_35363474_35363956_35364230_35365598_35365746_35366618_35366763_35367743_35368032_35368692_35368963_35375170_35375525_35381160_35381451_35382280_35382456_35384729_35384862_35388172_35388377_35389246_35389429_35389879_35389986_35394393_35394517_35398045_35398268_35400270_35400537_35403140_35403221_35414455_35414716_35415352
ENSMUSG00000038121.7_0	chr18	-	4593	1	FSM	ENSMUSG00000098253.3	ENSMUST00000184508.3	54	1	-3825	-714	-3825	714	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAAATGAACTA	NA	False	NA	NA	False	AATACA	-32	NA	68397869	68393276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_68393300_68397900
ENSMUSG00000038121.7_1	chr18	-	3259	4	FSM	ENSMUSG00000038121.7	ENSMUST00000042852.7	9651	4	129	6263	-2	-6263	multi-exon	FALSE	canonical	3	166	junction_3	16.3367343397905	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTTAGAATATCACATCA	NA	False	NA	NA	False	AATAAA	-13	NA	68433275	68399520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_68402024_68405633_68405746_68408832_68409346_68433144
ENSMUSG00000038121.7_2	chr18	-	1982	1	ISM	ENSMUSG00000038121.7	ENSMUST00000042852.7	9651	4	32037	6128	31906	-6128	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCCCCGAGTTCTCCAT	NA	False	NA	-3	True	AATAAA	-17	NA	68401367	68399385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_68399400_68401400
ENSMUSG00000038122.10_10	chr10	-	1329	2	ISM	ENSMUSG00000038122.10	ENSMUST00000219385.2	4192	30	48	175392	48	-69398	5prime_fragment	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56104737	56099656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_56100822_56104573
ENSMUSG00000038122.10_11	chr10	-	535	1	ISM	ENSMUSG00000038122.10	ENSMUST00000099739.5	7240	33	213859	3	142093	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTATCTTGTGAGAACAT	NA	False	NA	NA	False	AATAAA	-13	NA	55890926	55890391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_55890400_55890900
ENSMUSG00000038122.10_26	chr10	-	2992	20	ISM	ENSMUSG00000038122.10	ENSMUST00000219385.2	4192	30	26	102022	26	3972	5prime_fragment	FALSE	canonical	1	7	junction_7	3.64718234506745	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTCTCCCCATTGTTTC	NA	False	NA	NA	False	CATAAA	-8	NA	56104759	56026286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_56027009_56027861_56027950_56031775_56031915_56037230_56037314_56038106_56038309_56046939_56047068_56049937_56050081_56053587_56053681_56056575_56056717_56063838_56063930_56068935_56068996_56071451_56071597_56072503_56072566_56072653_56072758_56072883_56072963_56074530_56074657_56077983_56078053_56091045_56091215_56100659_56100822_56104573
ENSMUSG00000038122.10_4	chr10	-	4108	33	FSM	ENSMUSG00000038122.10	ENSMUST00000099739.5	7240	33	5	3127	5	-3127	multi-exon	TRUE	non_canonical	1	5	junction_4	4.26639759486853	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGGAACGAAGTGAGGT	NA	False	NA	NA	False	AATATA	-22	NA	56104780	55893515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_55893801_55903994_55904184_55916234_55916376_55924958_55925114_55925857_55925974_55927484_55927555_55940569_55940654_55948571_55948698_55963626_55963721_55964401_55964511_55965812_55965936_55999606_55999696_56005156_56005274_56026889_56027009_56027861_56027950_56031775_56031915_56037230_56037314_56038106_56038309_56046939_56047068_56049937_56050081_56053587_56053681_56056575_56056717_56063838_56063930_56068935_56068996_56071451_56071597_56072503_56072566_56072653_56072758_56072883_56072963_56074530_56074657_56077983_56078053_56091045_56091215_56100659_56100822_56104573
ENSMUSG00000038122.10_6	chr10	-	5290	18	ISM	ENSMUSG00000038122.10	ENSMUST00000099739.5	7240	33	66645	-2	-5121	2	3prime_fragment	FALSE	non_canonical	1	5	junction_4	4.845002419288	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTGTGAGAACATTATTA	NA	False	NA	NA	False	AATAAA	-18	NA	56038140	55890386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_55893801_55903994_55904184_55916234_55916376_55924958_55925114_55925857_55925974_55927484_55927555_55940569_55940654_55948571_55948698_55963626_55963721_55964401_55964511_55965812_55965936_55999606_55999696_56005156_56005274_56026889_56027009_56027861_56027950_56031775_56031915_56037230_56037314_56038106
ENSMUSG00000038122.10_8	chr10	-	4189	30	FSM	ENSMUSG00000038122.10	ENSMUST00000219385.2	4192	30	3	0	3	0	multi-exon	FALSE	non_canonical	1	5	junction_1	4.33496417374282	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGGGCTTGATCTGTT	NA	False	NA	NA	False	NA	NA	NA	56104782	55924264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_55925114_55925857_55925974_55927484_55927555_55940569_55940654_55948571_55948698_55963626_55963721_55964401_55964511_55965812_55965936_55999606_55999696_56005156_56005274_56026889_56027009_56027861_56027950_56031775_56031915_56037230_56037314_56038106_56038309_56046939_56047068_56049937_56050081_56053587_56053681_56056575_56056717_56063838_56063930_56068935_56068996_56071451_56071597_56072503_56072566_56072653_56072758_56072883_56072963_56074530_56074657_56077983_56078053_56091045_56091215_56100659_56100822_56104573
ENSMUSG00000038126.18_2	chr5	-	3517	1	ISM	ENSMUSG00000038126.18	ENSMUST00000031344.13	7747	22	73492	5	6623	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACTTTCGTGGTATCTG	7547	False	NA	-9	True	NA	NA	NA	124392543	124389026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_124389000_124392500
ENSMUSG00000038126.18_23	chr5	-	5159	6	ISM	ENSMUSG00000038126.18	ENSMUST00000184951.8	5008	23	-9	55113	9	6408	5prime_fragment	FALSE	canonical	3	20	junction_4	11.916375287813	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	124465924	124446843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_124450895_124453435_124453960_124454144_124454235_124458907_124459062_124462936_124463201_124465848
ENSMUSG00000038126.18_3	chr5	-	7721	23	FSM	ENSMUSG00000038126.18	ENSMUST00000184951.8	5008	23	-9	-2704	9	-5	multi-exon	FALSE	canonical	3	20	junction_21	8.45259019423842	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACTTTCGTGGTATCTG	NA	False	NA	-9	True	NA	NA	NA	124465924	124389026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124393182_124397008_124397078_124398030_124398279_124398997_124399099_124399984_124400106_124400951_124401099_124403379_124403559_124405101_124405237_124421696_124421799_124423531_124423597_124424439_124424488_124428908_124429125_124430382_124430471_124435617_124435774_124436684_124437143_124442236_124442341_124445015_124445110_124450767_124450895_124453435_124453960_124454144_124454235_124458907_124459062_124462936_124463201_124465848
ENSMUSG00000038126.18_4	chr5	-	7678	23	FSM	ENSMUSG00000038126.18	ENSMUST00000147737.8	5959	23	-19	-1700	2	-11	multi-exon	FALSE	canonical	3	31	junction_21	7.18368790391303	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGACATGAACTTTCGTGG	NA	False	NA	-15	True	NA	NA	NA	124465931	124389032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124393182_124397008_124397078_124398030_124398279_124398997_124399099_124399984_124400106_124400951_124401099_124403379_124403559_124405101_124405237_124421696_124421799_124423531_124423597_124424439_124424488_124428908_124429125_124430382_124430471_124435617_124435774_124436684_124437143_124442236_124442341_124445015_124445110_124450767_124450895_124453435_124453960_124454144_124454235_124458907_124459018_124462936_124463201_124465848
ENSMUSG00000038126.18_9	chr5	-	7024	19	ISM	ENSMUSG00000038126.18	ENSMUST00000031344.13	7747	22	12187	7	9342	-7	3prime_fragment	FALSE	canonical	3	34	junction_11	6.88642429031009	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGAACTTTCGTGGTATC	NA	False	NA	-11	True	NA	NA	NA	124453848	124389028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_124393182_124397008_124397078_124398030_124398279_124398997_124399099_124399984_124400106_124400951_124401099_124403379_124403559_124405101_124405237_124421696_124421799_124423531_124423597_124424439_124424488_124428908_124429125_124430382_124430471_124435617_124435774_124436684_124437143_124442236_124442341_124445015_124445110_124450767_124450895_124453435
ENSMUSG00000038127.16_0	chr16	+	6935	11	FSM	ENSMUSG00000038127.16	ENSMUST00000100026.10	7089	11	147	7	36	-7	multi-exon	FALSE	canonical	3	85	junction_6	12.5415310070182	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAATGATGGCCTACTG	NA	False	NA	6	True	AATAAA	-15	NA	27207765	27270961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_27207888_27224396_27224460_27225400_27225528_27228073_27228165_27235997_27236116_27254311_27254428_27255117_27255163_27255247_27255353_27257050_27257128_27263293_27263401_27264997
ENSMUSG00000038127.16_11	chr16	+	3908	1	ISM	ENSMUSG00000038127.16	ENSMUST00000100026.10	7089	11	59438	4	58339	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGATGGCCTACTGTTT	NA	False	NA	9	True	AATAAA	-18	NA	27267056	27270964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_27267100_27271000
ENSMUSG00000038128.8_0	chr18	+	1794	11	FSM	ENSMUSG00000038128.8	ENSMUST00000042868.6	2717	11	-7	930	-7	-930	multi-exon	FALSE	canonical	0	0	junction_5	3.0347981810987	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCAGTGCATGTGTTT	4776	False	NA	NA	False	NA	NA	NA	33072203	33318393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_33072598_33211045_33211125_33240932_33240996_33242817_33242901_33262813_33262887_33289801_33289893_33291879_33291955_33309211_33309288_33312550_33312678_33315290_33315444_33317813
ENSMUSG00000038132.7_0	chr13	+	3036	4	FSM	ENSMUSG00000038132.7	ENSMUST00000037923.5	3086	4	45	5	45	-5	multi-exon	FALSE	canonical	1	3	junction_1	0.942809041582063	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTGCTGTTGCATCAG	NA	False	NA	NA	False	ATTAAA	-11	NA	46571954	46584566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_46572675_46573750_46573875_46575326_46575382_46582429
ENSMUSG00000038135.5_3	chr5	-	969	2	FSM	ENSMUSG00000038135.5	ENSMUST00000123386.2	221	2	-750	2	-750	-2	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGTGCTGGCGGGCCTCGG	NA	False	NA	NA	False	AATAAA	-13	NA	24957072	24956002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24956188_24956288
ENSMUSG00000038141.12_1	chr17	+	1919	17	FSM	ENSMUSG00000038141.12	ENSMUST00000232383.2	4499	17	49	2531	-41	19	multi-exon	TRUE	canonical	0	0	junction_14	255.117367291508	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGCAATTGAGTCTGT	NA	False	NA	NA	False	AATAAA	-29	NA	6307183	6356058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_6307350_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
ENSMUSG00000038141.12_10	chr17	+	1878	17	FSM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	-4	2531	-4	19	multi-exon	FALSE	canonical	0	0	junction_14	216.5692369082	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGCAATTGAGTCTGT	NA	False	NA	NA	False	AATAAA	-29	NA	6320740	6356058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
ENSMUSG00000038141.12_11	chr17	+	5126	16	ISM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	-4	8	-4	-8	intron_retention	FALSE	canonical	0	0	junction_14	220.750195671236	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTGTATGAGACTTTT	NA	False	NA	30	True	AATAAA	-39	NA	6320740	6358581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851
ENSMUSG00000038141.12_17	chr17	+	1773	17	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	-4	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	237.645407790157	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTGTATGAGACTTTT	NA	False	NA	30	True	AATAAA	-39	NA	6320740	6358581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6358271
ENSMUSG00000038141.12_84	chr17	+	2261	1	ISM	ENSMUSG00000038141.12	ENSMUST00000232383.2	4499	17	49186	8	8443	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTGTATGAGACTTTT	NA	False	NA	30	True	AATAAA	-39	NA	6356320	6358581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_6356300_6358600
ENSMUSG00000038145.18_0	chr9	+	3246	8	NIC	ENSMUSG00000038145.18	novel	1664	9	NA	NA	3	560	intron_retention	FALSE	canonical	3	20	junction_3	6.34388666033558	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAATTAAAAAAAAAA	8274	False	NA	NA	False	NA	NA	NA	121946386	121997101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_121946474_121960958_121961009_121961693_121961817_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
ENSMUSG00000038145.18_1	chr9	+	3097	6	FSM	ENSMUSG00000038145.18	ENSMUST00000120173.9	4758	6	-6	1667	-3	560	multi-exon	FALSE	canonical	2	8	junction_1	10.6695829346793	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAATTAAAAAAAAAA	8250	False	NA	NA	False	NA	NA	NA	121946362	121997101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121946474_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
ENSMUSG00000038145.18_12	chr9	+	2986	5	ISM	ENSMUSG00000038145.18	ENSMUST00000134949.8	1664	9	19557	-1644	19152	558	3prime_fragment	FALSE	canonical	3	26	junction_3	4.7169905660283	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAACAAAAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121965969	121997099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
ENSMUSG00000038145.18_13	chr9	+	2160	1	ISM	ENSMUSG00000038145.18	ENSMUST00000118886.9	4811	7	50236	7	792	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGAAGCCGAGTCTGTGT	495	False	NA	NA	False	AATAAA	-21	NA	121996601	121998761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_121996600_121998800
ENSMUSG00000038145.18_16	chr9	+	3346	8	NIC	ENSMUSG00000038145.18	novel	1664	9	NA	NA	4	558	intron_retention	FALSE	canonical	1	1	junction_1	11.5245965886278	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAACAAAAATTAAAAAAAA	8267	False	NA	NA	False	NA	NA	NA	121946379	121997099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_121946569_121960958_121961009_121961693_121961817_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
ENSMUSG00000038145.18_2	chr9	+	3348	9	FSM	ENSMUSG00000038145.18	ENSMUST00000134949.8	1664	9	-38	-1646	-1	560	multi-exon	FALSE	canonical	2	2	junction_3	11.6833214455479	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAATTAAAAAAAAAA	8262	False	NA	NA	False	NA	NA	NA	121946374	121997101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121946474_121960958_121961009_121961693_121961817_121963052_121963143_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
ENSMUSG00000038145.18_5	chr9	+	3246	10	NIC	ENSMUSG00000038145.18	novel	1664	9	NA	NA	2	560	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	13.5135962626762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAATTAAAAAAAAAA	8273	False	NA	NA	False	NA	NA	NA	121946385	121997101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_121946474_121960958_121961009_121961693_121961817_121963026_121963143_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301_121996015_121996131
ENSMUSG00000038145.18_7	chr9	+	3362	9	NIC	ENSMUSG00000038145.18	novel	1664	9	NA	NA	3	560	intron_retention	FALSE	canonical	1	1	junction_3	11.9209636774885	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAATTAAAAAAAAAA	8274	False	NA	NA	False	NA	NA	NA	121946386	121997101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_121946474_121960958_121961009_121961693_121961817_121963026_121963143_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
ENSMUSG00000038145.18_8	chr9	+	3116	7	FSM	ENSMUSG00000038145.18	ENSMUST00000118886.9	4811	7	26	1669	8	558	multi-exon	FALSE	canonical	3	10	junction_2	9.08142181721685	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAACAAAAATTAAAAAAAA	8279	False	NA	NA	False	NA	NA	NA	121946391	121997099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121946474_121960958_121961009_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
ENSMUSG00000038146.9_0	chr17	-	2485	4	FSM	ENSMUSG00000038146.9	ENSMUST00000236544.2	645	4	174	-2014	174	-6	multi-exon	FALSE	canonical	3	89	junction_2	5.43650214343336	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAAGTGTCTGGTTTCTG	NA	False	NA	-7	True	AATAAA	-13	NA	32352565	32339799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32341835_32343255_32343354_32351175_32351324_32352361
ENSMUSG00000038146.9_11	chr17	-	2821	6	ISM	ENSMUSG00000038146.9	ENSMUST00000087723.5	8016	33	28965	6	-62	-6	3prime_fragment	FALSE	canonical	3	89	junction_2	4.44522215417857	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAAGTGTCTGGTTTCTG	7598	False	NA	-7	True	AATAAA	-13	NA	32356861	32339799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32341835_32343255_32343354_32351175_32351324_32352361_32352667_32354358_32354522_32356789
ENSMUSG00000038146.9_12	chr17	-	4726	14	ISM	ENSMUSG00000038146.9	ENSMUST00000087723.5	8016	33	20341	6	-8686	-6	3prime_fragment	FALSE	canonical	3	67	junction_11	11.1089281221758	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAAGTGTCTGGTTTCTG	3937	False	NA	-7	True	AATAAA	-13	NA	32365485	32339799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32341835_32343255_32343354_32351175_32351324_32352361_32352667_32354358_32354522_32356789_32356875_32358104_32358328_32358618_32358774_32360190_32360524_32362217_32362784_32363141_32363261_32363340_32363599_32363675_32363809_32365380
ENSMUSG00000038146.9_14	chr17	-	4383	12	ISM	ENSMUSG00000038146.9	ENSMUST00000087723.5	8016	33	22330	9	-6697	-9	3prime_fragment	FALSE	canonical	3	67	junction_11	10.9635006775864	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCCAAGTGTCTGGTTT	5926	False	NA	-10	True	AATAAA	-10	NA	32363496	32339802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32341835_32343255_32343354_32351175_32351324_32352361_32352667_32354358_32354522_32356789_32356875_32358104_32358328_32358618_32358774_32360190_32360524_32362217_32362784_32363141_32363261_32363340
ENSMUSG00000038146.9_3	chr17	-	3796	10	ISM	ENSMUSG00000038146.9	ENSMUST00000087723.5	8016	33	23355	9	-5672	-9	3prime_fragment	FALSE	canonical	3	69	junction_7	8.72770528295799	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCCAAGTGTCTGGTTT	6951	False	NA	-10	True	AATAAA	-10	NA	32362471	32339802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32341835_32343255_32343354_32351175_32351324_32352361_32352667_32354358_32354522_32356789_32356875_32358104_32358328_32358618_32358774_32360190_32360524_32362217
ENSMUSG00000038146.9_4	chr17	-	2883	7	ISM	ENSMUSG00000038146.9	ENSMUST00000087723.5	8016	33	27670	9	-1357	-9	3prime_fragment	FALSE	canonical	3	89	junction_2	4.3493294502333	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCCAAGTGTCTGGTTT	6303	False	NA	-10	True	AATAAA	-10	NA	32358156	32339802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32341835_32343255_32343354_32351175_32351324_32352361_32352667_32354358_32354522_32356789_32356875_32358104
ENSMUSG00000038146.9_6	chr17	-	8045	33	FSM	ENSMUSG00000038146.9	ENSMUST00000087723.5	8016	33	-38	9	-38	-9	multi-exon	TRUE	canonical	3	42	junction_20	15.8899720244404	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCCAAGTGTCTGGTTT	6001	False	NA	-10	True	AATAAA	-10	NA	32385864	32339802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_32341835_32343255_32343354_32351175_32351324_32352361_32352667_32354358_32354522_32356789_32356875_32358104_32358328_32358618_32358774_32360190_32360524_32362217_32362784_32363141_32363261_32363340_32363599_32363675_32363809_32365380_32365566_32365954_32366103_32366235_32366438_32366738_32366965_32368948_32369105_32369576_32369691_32370259_32370412_32370489_32370683_32372498_32372610_32372726_32372961_32373287_32373402_32373711_32373826_32374931_32375118_32375225_32375382_32376864_32377099_32377184_32377308_32377392_32377732_32377813_32377957_32383136_32383219_32385649
ENSMUSG00000038146.9_7	chr17	-	1639	1	ISM	ENSMUSG00000038146.9	ENSMUST00000087723.5	8016	33	44385	9	11298	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCCAAGTGTCTGGTTT	9143	False	NA	-10	True	AATAAA	-10	NA	32341441	32339802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32339800_32341400
ENSMUSG00000038146.9_8	chr17	-	3305	9	ISM	ENSMUSG00000038146.9	ENSMUST00000087723.5	8016	33	25541	8	-3486	-8	3prime_fragment	FALSE	canonical	3	69	junction_7	9.24577606261367	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCAAGTGTCTGGTTTC	9137	False	NA	-9	True	AATAAA	-11	NA	32360285	32339801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_32341835_32343255_32343354_32351175_32351324_32352361_32352667_32354358_32354522_32356789_32356875_32358104_32358328_32358618_32358774_32360190
ENSMUSG00000038150.8_0	chr11	-	2048	4	FSM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	131	5	131	-5	multi-exon	FALSE	canonical	3	195	junction_2	8.33999733546454	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCATGTCTGGCCTCTGCT	1454	False	NA	-4	True	AATAAA	-18	NA	98478063	98472086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_98473674_98473961_98474114_98474767_98474967_98477953
ENSMUSG00000038150.8_2	chr11	-	584	1	ISM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	5525	4	5525	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGTCTGGCCTCTGCTT	6848	False	NA	-3	True	AATAAA	-19	NA	98472669	98472085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_98472100_98472700
ENSMUSG00000038151.14_0	chr10	-	3370	3	ISM	ENSMUSG00000038151.14	ENSMUST00000039174.11	5281	8	17516	-1	15978	1	3prime_fragment	FALSE	canonical	3	47	junction_2	4	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAATGCTTGTCTAGTGT	NA	False	NA	-6	True	ATTAAA	-19	NA	44317228	44313171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_44316239_44316654_44316784_44317054
ENSMUSG00000038151.14_1	chr10	-	1727	1	Genic_Genomic	ENSMUSG00000038151.14	novel	NA	NA	NA	NA	18309	2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAATGCTTGTCTAGTGTC	NA	False	NA	-5	True	ATTAAA	-20	NA	44314897	44313170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_44313200_44314900
ENSMUSG00000038151.14_3	chr10	-	5131	7	NIC	ENSMUSG00000038151.14	novel	4025	7	NA	NA	-73	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	17.9814719456816	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAATGCTTGTCTAGTGTC	NA	False	NA	-5	True	ATTAAA	-20	NA	44404570	44313170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_44316239_44316654_44316784_44317054_44318161_44322787_44323041_44326114_44326235_44332620_44332867_44404361
ENSMUSG00000038151.14_4	chr10	-	5129	7	FSM	ENSMUSG00000038151.14	ENSMUST00000105490.3	4025	7	12	-1116	12	0	multi-exon	FALSE	canonical	3	20	junction_6	13.6218778278017	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCAATGCTTGTCTAGTG	NA	False	NA	-7	True	ATTAAA	-18	NA	44334671	44313172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_44316239_44316654_44316784_44317054_44318161_44322787_44323041_44326114_44326235_44332620_44332867_44334462
ENSMUSG00000038151.14_7	chr10	-	4011	7	FSM	ENSMUSG00000038151.14	ENSMUST00000218369.2	2517	7	-228	-1266	-228	-108	multi-exon	FALSE	canonical	0	0	junction_6	17.9814719456816	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAAGTGTTCAACAATTA	NA	False	NA	NA	False	ATTAAA	-15	NA	44333434	44314396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_44316239_44316654_44316784_44317054_44318161_44322787_44323041_44326114_44326235_44332620_44332867_44333119
ENSMUSG00000038151.14_8	chr10	-	3227	2	NIC	ENSMUSG00000038151.14	novel	4025	7	NA	NA	15988	-3	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTACCAATGCTTGTCTA	NA	False	NA	-10	True	ATTAAA	-15	NA	44317218	44313175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_44316239_44317054
ENSMUSG00000038155.12_0	chr19	-	763	7	FSM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	30	4	-15	-2	multi-exon	FALSE	canonical	3	1174	junction_6	961.706469424706	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGAGGTGTCTTTGGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	4092233	4090288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
ENSMUSG00000038155.12_11	chr19	-	988	6	ISM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	31	4	-14	-2	intron_retention	FALSE	canonical	3	1402	junction_5	871.235766024329	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGAGGTGTCTTTGGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	4092232	4090288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902
ENSMUSG00000038160.8_0	chr10	+	2239	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	111	2	54	-2	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAATTATGTGGTGGCT	NA	False	NA	NA	False	AATAAA	-16	NA	44144464	44240285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
ENSMUSG00000038160.8_2	chr10	+	2224	7	NIC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	-26	-2	combination_of_known_splicesites	FALSE	canonical	3	39	junction_5	103.891636921468	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAATTATGTGGTGGCT	NA	False	NA	NA	False	AATAAA	-16	NA	44144384	44240285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44222952_44223071_44238911
ENSMUSG00000038160.8_4	chr10	+	2229	7	NIC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	-15	-2	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	114.808536267997	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAATTATGTGGTGGCT	NA	False	NA	NA	False	AATAAA	-16	NA	44144395	44240285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_44144581_44162027_44162194_44165858_44165987_44179562_44179726_44195455_44195551_44222952_44223071_44238911
ENSMUSG00000038165.9_0	chr5	+	1179	1	FSM	ENSMUSG00000038165.9	ENSMUST00000182745.2	1051	1	-2	-126	-2	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGATGAGATTCAGTGT	9685	False	NA	NA	False	AATACA	-20	NA	24852679	24853858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24852700_24853900
ENSMUSG00000038167.7_1	chr6	-	2994	17	FSM	ENSMUSG00000038167.7	ENSMUST00000042647.7	3299	17	306	-1	306	1	multi-exon	FALSE	canonical	0	0	junction_7	3.59198326137525	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACATGGTTGTTTGGTGA	NA	False	NA	NA	False	TATAAA	-9	NA	125357450	125339621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_125339831_125340004_125340683_125341546_125341699_125347343_125347460_125347544_125347678_125349020_125349141_125349440_125349579_125349775_125349926_125350069_125350181_125351491_125351642_125351936_125351988_125352205_125352302_125352686_125352852_125354344_125354501_125355664_125355874_125356717_125356940_125357312
ENSMUSG00000038170.16_15	chr3	-	3007	5	ISM	ENSMUSG00000038170.16	ENSMUST00000045243.15	6185	17	21291	0	21213	0	3prime_fragment	FALSE	canonical	3	69	junction_4	7.49583217528247	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCATCAAGTTCTTATAG	NA	False	NA	-9	True	AATAAA	-15	NA	97654034	97646169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_97648762_97649804_97649918_97650480_97650619_97650801_97650919_97653987
ENSMUSG00000038170.16_25	chr3	-	5170	1	NIC	ENSMUSG00000038170.16	novel	6185	17	NA	NA	-36	-16105	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCAATTTAGTTTTCTC	NA	False	NA	NA	False	AATAAA	-13	NA	97675283	97670113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_97670100_97675300
ENSMUSG00000038170.16_4	chr3	-	2017	1	Genic_Genomic	ENSMUSG00000038170.16	novel	NA	NA	NA	NA	27064	3	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATCAAGTTCTTATAGAAG	NA	False	NA	-6	True	AATAAA	-18	NA	97648183	97646166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_-_97646200_97648200
ENSMUSG00000038170.16_5	chr3	-	3777	10	ISM	ENSMUSG00000038170.16	ENSMUST00000045243.15	6185	17	13792	-5	13714	5	3prime_fragment	FALSE	canonical	3	67	junction_8	8.90692614392492	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGTTCTTATAGAAGTT	NA	False	NA	-4	True	AATAAA	-20	NA	97661533	97646164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_97648762_97649804_97649918_97650480_97650619_97650801_97650919_97653987_97654080_97654832_97654915_97655080_97655252_97659124_97659320_97660331_97660512_97661441
ENSMUSG00000038170.16_6	chr3	-	6119	17	FSM	ENSMUSG00000038170.16	ENSMUST00000045243.15	6185	17	66	0	-12	0	multi-exon	FALSE	canonical	3	63	junction_16	8.347903928532	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCATCAAGTTCTTATAG	NA	False	NA	-9	True	AATAAA	-15	NA	97675259	97646169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_97648762_97649804_97649918_97650480_97650619_97650801_97650919_97653987_97654080_97654832_97654915_97655080_97655252_97659124_97659320_97660331_97660512_97661441_97661580_97661747_97661862_97662754_97662914_97664199_97664413_97664519_97664613_97664847_97664968_97666114_97666247_97673789
ENSMUSG00000038172.15_0	chr4	-	4338	20	FSM	ENSMUSG00000038172.15	ENSMUST00000102823.10	8831	20	17	4476	1	1643	multi-exon	FALSE	canonical	3	157	junction_3	31.1407314036548	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATCTACTTGTGCTA	NA	False	NA	NA	False	AATAAA	-32	NA	83242475	83143012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_83145462_83148644_83148762_83150947_83151066_83155478_83155588_83158304_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
ENSMUSG00000038172.15_1	chr4	-	4193	1	ISM	ENSMUSG00000038172.15	ENSMUST00000102823.10	8831	20	99760	3	8675	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTACAGTCTTCTATTTG	NA	False	NA	-15	True	AATAAA	-13	NA	83142732	83138539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_83138500_83142700
ENSMUSG00000038172.15_26	chr4	-	1780	16	FSM	ENSMUSG00000038172.15	ENSMUST00000048274.11	1804	16	12	12	12	-12	multi-exon	FALSE	canonical	3	169	junction_7	23.0820757780192	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTACAAAATATCACAAAT	NA	False	NA	NA	False	AATAAA	-10	NA	83242464	83158058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
ENSMUSG00000038174.15_0	chr1	-	3575	1	ISM	ENSMUSG00000038174.15	ENSMUST00000161600.8	8685	12	59936	7	38833	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGATTTCCCTGAGTTG	NA	False	NA	-6	True	TATAAA	-23	NA	58565546	58561971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_58562000_58565500
ENSMUSG00000038174.15_2	chr1	-	4202	12	FSM	ENSMUSG00000038174.15	ENSMUST00000161600.8	8685	12	33	4450	7	-235	multi-exon	FALSE	canonical	3	17	junction_1	5.70486235990445	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58625449	58566414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58569419_58574548_58574709_58578717_58578806_58579292_58579410_58583825_58583922_58585265_58585382_58587797_58587879_58591308_58591489_58596430_58596533_58597135_58597217_58605015_58605114_58625370
ENSMUSG00000038174.15_5	chr1	-	5518	13	FSM	ENSMUSG00000038174.15	ENSMUST00000097724.10	4581	13	-15	-922	-4	922	multi-exon	FALSE	canonical	3	6	junction_2	9.82450168371574	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCAGTGTTTCTAACTAT	NA	False	NA	NA	False	AATAAA	-17	NA	58625440	58565257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_58569419_58573643_58573812_58574548_58574709_58578717_58578806_58579292_58579410_58583825_58583922_58585265_58585382_58587797_58587879_58591308_58591489_58596430_58596533_58597135_58597217_58605015_58605114_58625370
ENSMUSG00000038174.15_6	chr1	-	4277	12	NIC	ENSMUSG00000038174.15	novel	8685	12	NA	NA	-1	-237	combination_of_known_junctions	FALSE	canonical	2	2	junction_10	9.78360916351746	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58625437	58566416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_58569419_58574548_58574709_58578717_58578806_58579292_58579410_58583825_58583922_58585265_58585382_58587797_58587879_58591308_58591489_58596430_58596533_58597135_58597217_58604926_58605114_58625370
ENSMUSG00000038174.15_7	chr1	-	1796	1	ISM	ENSMUSG00000038174.15	ENSMUST00000161600.8	8685	12	57272	4450	36169	-235	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58568210	58566414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_58566400_58568200
ENSMUSG00000038175.11_0	chr13	+	3059	7	FSM	ENSMUSG00000038175.11	ENSMUST00000038275.11	3065	7	-2	8	-2	-8	multi-exon	FALSE	canonical	3	33	junction_3	5.98377435700541	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAAACTGGGCCTTTGT	4393	False	NA	NA	False	AATAAA	-7	NA	45543215	45565490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_45543520_45544664_45544856_45557875_45558062_45559368_45559567_45560032_45560198_45561831_45562253_45563896
ENSMUSG00000038175.11_4	chr13	+	1779	2	ISM	ENSMUSG00000038175.11	ENSMUST00000222178.2	1954	7	17665	-969	17665	-8	3prime_fragment	FALSE	canonical	3	49	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAAACTGGGCCTTTGT	NA	False	NA	NA	False	AATAAA	-7	NA	45562067	45565490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_45562253_45563896
ENSMUSG00000038175.11_5	chr13	+	1181	1	ISM	ENSMUSG00000038175.11	ENSMUST00000038275.11	3065	7	21092	8	19907	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAAACTGGGCCTTTGT	NA	False	NA	NA	False	AATAAA	-7	NA	45564309	45565490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_45564300_45565500
ENSMUSG00000038178.17_16	chr11	+	2669	10	NNC	ENSMUSG00000038178.17	novel	744	5	NA	NA	-3422	-106	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	12.7143352554372	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGATGCCCCTCCTCACG	9854	False	NA	15	True	AATAAA	-18	NA	75448224	75464603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_75448387_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
ENSMUSG00000038178.17_17	chr11	+	3595	1	ISM	ENSMUSG00000038178.17	ENSMUST00000042561.14	6891	14	42278	5	7160	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAACTCCTCTGTGGCTTC	720	False	NA	NA	False	NA	NA	NA	75464801	75468396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75464800_75468400
ENSMUSG00000038178.17_3	chr11	+	3081	14	FSM	ENSMUSG00000038178.17	ENSMUST00000042561.14	6891	14	17	3793	17	-101	multi-exon	FALSE	canonical	3	5	junction_1	10.1858470089601	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCCCTCCTCACGTATCA	6892	False	NA	20	True	AATAAA	-23	NA	75422540	75464608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75422568_75423413_75423615_75433983_75434192_75435507_75435564_75436579_75436657_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
ENSMUSG00000038178.17_4	chr11	+	3107	14	FSM	ENSMUSG00000038178.17	ENSMUST00000108433.8	3236	14	23	106	-22	-106	multi-exon	FALSE	canonical	2	8	junction_1	9.5805522935017	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGATGCCCCTCCTCACG	6898	False	NA	15	True	AATAAA	-18	NA	75422546	75464603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75422605_75423413_75423615_75433983_75434192_75435507_75435564_75436579_75436657_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
ENSMUSG00000038178.17_6	chr11	+	3164	14	NIC	ENSMUSG00000038178.17	novel	3236	14	NA	NA	10	-106	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	10.1858470089601	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGATGCCCCTCCTCACG	6885	False	NA	15	True	AATAAA	-18	NA	75422533	75464603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_75422649_75423413_75423615_75433983_75434192_75435507_75435564_75436579_75436657_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
ENSMUSG00000038178.17_8	chr11	+	3278	14	FSM	ENSMUSG00000038178.17	ENSMUST00000169547.9	7145	14	74	3793	48	-106	multi-exon	FALSE	canonical	3	23	junction_1	7.15095061334898	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGATGCCCCTCCTCACG	7363	False	NA	15	True	AATAAA	-18	NA	75423011	75464603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75423241_75423413_75423615_75433983_75434192_75435507_75435564_75436579_75436657_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
ENSMUSG00000038178.17_9	chr11	+	3391	13	ISM	ENSMUSG00000038178.17	ENSMUST00000108433.8	3236	14	546	108	106	-108	3prime_fragment	FALSE	canonical	3	25	junction_5	6.71389520985314	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGGATGCCCCTCCTCA	7421	False	NA	13	True	AATAAA	-16	NA	75423069	75464601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75423615_75433983_75434192_75435507_75435564_75436579_75436657_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
ENSMUSG00000038180.12_1	chr2	+	2558	12	NIC	ENSMUSG00000038180.12	novel	1473	12	NA	NA	13	-45	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	5.75246982529323	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTGTCTCGAAAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	155907130	155912492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_155907573_155908053_155908159_155908486_155908554_155908724_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
ENSMUSG00000038180.12_3	chr2	+	2465	9	NIC	ENSMUSG00000038180.12	novel	2022	10	NA	NA	8	-7	intron_retention	FALSE	canonical	3	13	junction_5	2.86956007081225	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGAATGGAGGTTTGTGC	NA	False	NA	5	True	ATTAAA	-16	NA	155907125	155911414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
ENSMUSG00000038180.12_4	chr2	+	2284	10	NIC	ENSMUSG00000038180.12	novel	1473	12	NA	NA	-11	-7	intron_retention	FALSE	canonical	3	13	junction_1	3.23178657161089	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGAATGGAGGTTTGTGC	NA	False	NA	5	True	ATTAAA	-16	NA	155907135	155911414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_155908554_155908724_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
ENSMUSG00000038180.12_7	chr2	+	1116	11	NIC	ENSMUSG00000038180.12	novel	747	9	NA	NA	-3	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	7.18401002226472	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTAGAATGGAGGTTTGT	NA	False	NA	3	True	ATTAAA	-14	NA	155907658	155911412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_155907806_155908053_155908159_155908724_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
ENSMUSG00000038181.17_0	chr5	+	4375	3	NIC	ENSMUSG00000038181.17	novel	3715	4	NA	NA	-4	0	intron_retention	FALSE	canonical	3	41	junction_1	2.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTTTTAGGTCTAGG	NA	False	NA	3	True	ATTAAA	-14	NA	24791734	24797482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_24793299_24794094_24795490_24796066
ENSMUSG00000038181.17_1	chr5	+	3707	4	FSM	ENSMUSG00000038181.17	ENSMUST00000121863.5	3715	4	7	1	7	-1	multi-exon	FALSE	canonical	3	23	junction_2	9.8770215933527	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGTTTTTAGGTCTAG	NA	False	NA	2	True	ATTAAA	-13	NA	24791754	24797481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24793299_24794094_24794660_24795306_24795490_24796066
ENSMUSG00000038181.17_4	chr5	+	5149	2	NIC	ENSMUSG00000038181.17	novel	3715	4	NA	NA	9	0	intron_retention	FALSE	canonical	3	46	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTTTTAGGTCTAGG	NA	False	NA	3	True	ATTAAA	-14	NA	24791756	24797482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_24795490_24796066
ENSMUSG00000038181.17_5	chr5	+	1911	3	ISM	ENSMUSG00000038181.17	ENSMUST00000121863.5	3715	4	2598	2	2523	-2	3prime_fragment	FALSE	canonical	3	23	junction_1	11.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAACTGTTTTTAGGTCTA	NA	False	NA	1	True	ATTAAA	-12	NA	24794345	24797480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_24794660_24795306_24795490_24796066
ENSMUSG00000038181.17_6	chr5	+	1957	1	FSM	ENSMUSG00000076387.3	ENSMUST00000102432.3	98	1	-1586	-273	-1586	273	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTTTTAGGTCTAGG	NA	False	NA	3	True	ATTAAA	-14	NA	24795525	24797482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24795500_24797500
ENSMUSG00000038187.15_1	chr7	-	2578	11	FSM	ENSMUSG00000038187.15	ENSMUST00000047091.14	2581	11	-17	20	-17	0	multi-exon	FALSE	canonical	3	112	junction_8	39.4138300600183	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTCTGACCAACTTTA	NA	False	NA	-19	True	AATAAA	-14	NA	112968563	112914852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112964111_112964177_112968078_112968166_112968405
ENSMUSG00000038187.15_14	chr7	-	2516	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_8	62.9638344166272	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTCTGACCAACTTTA	NA	False	NA	-19	True	AATAAA	-14	NA	112968566	112914852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112968078_112968166_112968405
ENSMUSG00000038187.15_3	chr7	-	2423	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_7	47.410734836931	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTCTGACCAACTTTA	NA	False	NA	-19	True	AATAAA	-14	NA	112968566	112914852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112964111_112964177_112968078_112968166_112968405
ENSMUSG00000038187.15_5	chr7	-	2359	9	FSM	ENSMUSG00000038187.15	ENSMUST00000119278.8	2394	9	32	3	-21	0	multi-exon	FALSE	canonical	3	59	junction_7	50.6814500088543	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTCTGACCAACTTTA	NA	False	NA	-19	True	AATAAA	-14	NA	112968567	112914852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112968078_112968166_112968405
ENSMUSG00000038188.18_1	chr11	+	2857	11	FSM	ENSMUSG00000038188.18	ENSMUST00000042808.13	2887	11	20	10	-15	-6	multi-exon	FALSE	canonical	1	3	junction_9	2.37697286480094	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAATTAATTAATTAATT	NA	False	NA	NA	False	ATTAAA	-15	NA	75404385	75417398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75404517_75404830_75404890_75405134_75405237_75405991_75406515_75411119_75411339_75411728_75411858_75412777_75412882_75413004_75413123_75414600_75414723_75414816_75414964_75416195
ENSMUSG00000038201.11_0	chr7	+	3364	2	FSM	ENSMUSG00000038201.11	ENSMUST00000107774.3	2182	2	702	-1884	702	1884	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTAGTGTTGAGTTATTT	NA	False	NA	NA	False	ATTAAA	-14	NA	45055778	45061071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45056440_45058368
ENSMUSG00000038203.22_0	chr6	-	3204	2	FSM	ENSMUSG00000102373.2_ENSMUSG00000038203.22	ENSMUST00000147595.7	2400	2	-58	-746	-58	-730	multi-exon	FALSE	canonical	2	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCATATCAGTGTTTGT	7965	False	NA	NA	False	AATATA	-19	NA	52237846	52233927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52236129_52236843
ENSMUSG00000038205.13_0	chr3	+	4890	8	FSM	ENSMUSG00000038205.13	ENSMUST00000045743.13	5006	8	108	8	106	-8	multi-exon	FALSE	canonical	3	53	junction_1	11.768168758068	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATAATATTTGAGTTAC	NA	False	NA	NA	False	AATAAA	-12	NA	97565635	97581120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_97565686_97565904_97566083_97569588_97569756_97570897_97570992_97571183_97571305_97573897_97574032_97574674_97574744_97577043
ENSMUSG00000038205.13_13	chr3	+	2228	1	ISM	ENSMUSG00000038205.13	ENSMUST00000045743.13	5006	8	13366	7	1380	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAATATTTGAGTTACT	NA	False	NA	NA	False	AATAAA	-13	NA	97578893	97581121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_97578900_97581100
ENSMUSG00000038205.13_2	chr3	+	4881	7	ISM	ENSMUSG00000038205.13	ENSMUST00000045743.13	5006	8	339	5	337	-5	3prime_fragment	FALSE	canonical	3	65	junction_1	8.35995746932297	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATATTTGAGTTACTTA	NA	False	NA	NA	False	AATAAA	-15	NA	97565866	97581123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_97566083_97569588_97569756_97570897_97570992_97571183_97571305_97573897_97574032_97574674_97574744_97577043
ENSMUSG00000038205.13_5	chr3	+	4938	8	NNC	ENSMUSG00000038205.13	novel	5006	8	NA	NA	149	-8	intron_retention	FALSE	canonical	3	6	junction_1	26.4683098926136	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATAATATTTGAGTTAC	NA	False	NA	NA	False	AATAAA	-12	NA	97565678	97581120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_97565777_97565904_97566083_97569588_97569756_97570897_97570992_97571183_97571305_97573897_97574032_97574674_97574744_97577043
ENSMUSG00000038206.14_0	chr8	+	1888	6	FSM	ENSMUSG00000038206.14	ENSMUST00000040218.13	3571	6	28	1655	9	-109	multi-exon	TRUE	canonical	3	53	junction_4	8.56504524214554	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAACATTGAGAATATAAA	NA	False	NA	3	True	AATAAA	-16	NA	57004152	57045319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_57004412_57017592_57017930_57022318_57022446_57041041_57041161_57043092_57043290_57044470
ENSMUSG00000038206.14_4	chr8	+	1586	5	ISM	ENSMUSG00000038206.14	ENSMUST00000040218.13	3571	6	13615	1551	13596	-5	3prime_fragment	FALSE	canonical	3	53	junction_3	8.78919791562347	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACTCAGTGTTAACTAT	NA	False	NA	NA	False	AATAAA	-43	NA	57017739	57045423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_57017930_57022318_57022446_57041041_57041161_57043092_57043290_57044470
ENSMUSG00000038206.14_8	chr8	+	672	1	ISM	ENSMUSG00000038206.14	ENSMUST00000110322.9	1709	4	40518	114	3688	-114	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCACTTAAACATTGAGAAT	NA	False	NA	-2	True	AATAAA	-11	NA	57044642	57045314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_57044600_57045300
ENSMUSG00000038208.14_0	chr11	-	2384	8	FSM	ENSMUSG00000038208.14	ENSMUST00000090827.12	2419	8	34	1	-19	-1	multi-exon	FALSE	canonical	3	39	junction_7	8.7084289452161	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGACTCTGCTACTCTA	NA	False	NA	NA	False	AATAAA	-20	NA	98291282	98279503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_98280928_98281112_98281318_98281502_98281640_98281905_98281968_98282520_98282584_98288721_98288875_98289710_98289809_98291040
ENSMUSG00000038208.14_6	chr11	-	2670	7	ISM	ENSMUSG00000038208.14	ENSMUST00000090827.12	2419	8	980	1	904	-1	3prime_fragment	FALSE	canonical	3	48	junction_6	7.50555349946513	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGACTCTGCTACTCTA	NA	False	NA	NA	False	AATAAA	-20	NA	98290336	98279503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_98280928_98281112_98281318_98281502_98281640_98281905_98281968_98282520_98282584_98288721_98288875_98289710
ENSMUSG00000038212.17_0	chr13	-	3332	12	FSM	ENSMUSG00000038212.17	ENSMUST00000155487.8	3832	12	24	476	7	7	multi-exon	FALSE	canonical	3	418	junction_6	41.7491525128019	1015	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAACAATTTCTGTCAT	NA	False	NA	-8	True	AATAAA	-24	NA	65260765	65212952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_65214676_65215676_65215820_65217457_65217556_65219818_65219932_65221369_65221442_65222799_65222914_65223297_65223517_65226167_65226283_65229213_65229342_65234902_65234966_65243432_65243529_65260317
ENSMUSG00000038213.8_1	chr6	-	2362	7	FSM	ENSMUSG00000038213.8	ENSMUST00000043422.8	2352	7	-12	2	-12	-2	multi-exon	FALSE	canonical	1	1	junction_3	4.61880215351701	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCGCACTTTCTTCTCTC	8501	False	NA	NA	False	AATAAA	-15	NA	125208835	125200897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_125201673_125201826_125201914_125203453_125203760_125205025_125205365_125207107_125207381_125207517_125207761_125208496
ENSMUSG00000038214.16_0	chr10	+	6046	4	FSM	ENSMUSG00000038214.16	ENSMUST00000167488.9	6337	4	286	5	-23	-5	multi-exon	FALSE	canonical	3	36	junction_3	1.24721912892465	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATATAAAAATAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	43355112	43391387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_43355369_43369637_43369686_43370141_43370339_43385842
ENSMUSG00000038214.16_5	chr10	+	3398	1	ISM	ENSMUSG00000038214.16	ENSMUST00000167488.9	6337	4	33163	5	18829	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATATAAAAATAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	43387989	43391387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_43388000_43391400
ENSMUSG00000038215.16_10	chr8	-	3426	10	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	6	-2	intron_retention	FALSE	canonical	3	61	junction_9	40.0484274748694	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTATATGTGCCGATT	NA	False	NA	-7	True	AATAAA	-16	NA	57003901	56984558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003722
ENSMUSG00000038215.16_14	chr8	-	1599	12	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	16	junction_11	54.5031654247927	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAGCTGTATATGTGC	NA	False	NA	-12	True	AATAAA	-11	NA	57003892	56984563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003157_57003722
ENSMUSG00000038215.16_2	chr8	-	1544	11	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	61	junction_10	38.0914688611505	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTATATGTGCCGATT	NA	False	NA	-7	True	AATAAA	-16	NA	57003891	56984558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003722
ENSMUSG00000038215.16_25	chr8	-	2187	11	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	38	junction_10	43.2676553559353	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTATATGTGCCGATT	NA	False	NA	-7	True	AATAAA	-16	NA	57003909	56984558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097
ENSMUSG00000038215.16_4	chr8	-	1746	12	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	11	junction_11	55.4532041566551	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTATATGTGCCGATT	NA	False	NA	-7	True	AATAAA	-16	NA	57003891	56984558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003157_57003579
ENSMUSG00000038215.16_6	chr8	-	1672	11	FSM	ENSMUSG00000038215.16	ENSMUST00000040330.15	1690	11	16	2	2	-2	multi-exon	FALSE	canonical	3	35	junction_10	43.9777216326631	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTATATGTGCCGATT	NA	False	NA	-7	True	AATAAA	-16	NA	57003876	56984558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003579
ENSMUSG00000038215.16_7	chr8	-	1835	12	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-2	-3	combination_of_known_splicesites	FALSE	canonical	2	2	junction_11	61.7591964577539	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTGTATATGTGCCGAT	NA	False	NA	-8	True	AATAAA	-15	NA	57003880	56984559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57002259_57002420_57003579
ENSMUSG00000038217.14_0	chr11	+	3039	2	FSM	ENSMUSG00000085148.2	ENSMUST00000134345.2	449	2	32	-2622	32	-25	multi-exon	FALSE	canonical	3	22	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAATACAAAAGACAA	3975	False	NA	-17	True	TTTAAA	-25	NA	75352501	75357477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75352582_75354518
ENSMUSG00000038217.14_1	chr11	+	1442	6	NNC	ENSMUSG00000038217.14	novel	564	5	NA	NA	-51	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	13.3506554146229	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCAGTCTCTTGTGAA	3963	False	NA	24	True	AATAAA	-16	NA	75352489	75361717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_75352582_75354518_75354684_75359382_75359466_75359667_75359751_75360297_75360926_75361326
ENSMUSG00000038217.14_2	chr11	+	1495	5	NNC	ENSMUSG00000038217.14	novel	1153	5	NA	NA	-17	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	13.1220234720107	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGATTTCATCAGTCTCT	NA	False	NA	18	True	AATAAA	-10	NA	75358887	75361711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297_75360926_75361326
ENSMUSG00000038217.14_3	chr11	+	1877	4	ISM	ENSMUSG00000038217.14	ENSMUST00000108435.2	1112	5	7	9	7	-9	intron_retention	FALSE	canonical	3	27	junction_1	3.09120616516523	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCATCAGTCTCTTGTGA	NA	False	NA	23	True	AATAAA	-15	NA	75358911	75361716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297
ENSMUSG00000038225.16_1	chr8	-	3793	15	FSM	ENSMUSG00000038225.16	ENSMUST00000211400.2	3797	15	9	-5	-9	5	multi-exon	FALSE	canonical	3	14	junction_1	36.5959739059155	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGAAAAATAGTGTGTGT	NA	False	NA	-5	True	AATAAA	-24	NA	47070226	47028623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_47029757_47031053_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ENSMUSG00000038225.16_12	chr8	-	1867	13	NIC	ENSMUSG00000038225.16	novel	1833	14	NA	NA	-3	261	combination_of_known_splicesites	FALSE	canonical	3	31	junction_7	35.2230984819148	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTTATGCCTGGTGA	NA	False	NA	-9	True	ATTAAA	-14	NA	47070250	47031636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ENSMUSG00000038225.16_15	chr8	-	2094	14	FSM	ENSMUSG00000038225.16	ENSMUST00000209787.2	1833	14	-1	-260	-1	260	multi-exon	FALSE	canonical	3	92	junction_6	19.6766764885012	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAGCTTATGCCTGGTG	NA	False	NA	-10	True	ATTAAA	-13	NA	47070244	47031637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ENSMUSG00000038225.16_17	chr8	-	2813	13	ISM	ENSMUSG00000038225.16	ENSMUST00000136335.8	3943	14	-13	2440	-1	261	5prime_fragment	FALSE	canonical	3	92	junction_6	20.4659269681749	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTTATGCCTGGTGA	NA	False	NA	-9	True	ATTAAA	-14	NA	47070248	47031636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ENSMUSG00000038225.16_26	chr8	-	1994	13	NIC	ENSMUSG00000038225.16	novel	1833	14	NA	NA	2	261	combination_of_known_splicesites	FALSE	canonical	3	19	junction_10	37.7258937012174	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTTATGCCTGGTGA	NA	False	NA	-9	True	ATTAAA	-14	NA	47070241	47031636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47063474_47063661_47065404_47065482_47070168
ENSMUSG00000038225.16_5	chr8	-	2710	1	NIC	ENSMUSG00000038225.16	novel	3797	15	NA	NA	14285	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAATATAAAAAAAA	NA	False	NA	-35	True	NA	NA	NA	47031363	47028653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_47028700_47031400
ENSMUSG00000038227.16_0	chr6	-	2041	2	FSM	ENSMUSG00000038227.16	ENSMUST00000048680.8	3226	2	1187	-2	6	2	multi-exon	FALSE	canonical	3	9	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGTTGTGCGGCTCTGCTCT	9739	False	NA	NA	False	AATAAA	-17	NA	52203163	52200077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52201463_52202507
ENSMUSG00000038227.16_1	chr6	-	1870	3	FSM	ENSMUSG00000038227.16	ENSMUST00000114425.3	851	3	3	-1022	3	1	multi-exon	FALSE	canonical	2	7	junction_2	1	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTTGTGCGGCTCTGCTC	9736	False	NA	NA	False	AATAAA	-16	NA	52203166	52200078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52201463_52202507_52202598_52202770
ENSMUSG00000038235.5_0	chr1	+	1898	10	FSM	ENSMUSG00000038235.5	ENSMUST00000043839.5	2518	10	24	596	-20	362	multi-exon	FALSE	canonical	1	67	junction_8	70.6616000978966	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTCTTTTTTGTTGAAC	NA	False	NA	12	True	AATAAA	-14	NA	171265126	171291575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171265270_171287930_171288000_171288105_171288214_171288396_171288544_171288768_171288975_171289130_171289234_171289372_171289481_171290170_171290184_171290456_171290509_171290626
ENSMUSG00000038235.5_1	chr1	+	1883	9	NIC	ENSMUSG00000038235.5	novel	2518	10	NA	NA	-18	362	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	81.7212296468916	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTCTTTTTTGTTGAAC	NA	False	NA	12	True	AATAAA	-14	NA	171265128	171291575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_171265270_171287930_171288000_171288105_171288214_171288396_171288544_171288768_171288975_171289130_171289234_171289372_171289481_171290456_171290509_171290626
ENSMUSG00000038236.9_0	chr6	-	2033	2	FSM	ENSMUSG00000038236.9	ENSMUST00000048715.9	2009	2	-26	2	-26	-2	multi-exon	FALSE	canonical	2	12	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAGAAACACGGACTGCT	9928	False	NA	NA	False	AATAAA	-12	NA	52194511	52191479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52193011_52194009
ENSMUSG00000038239.12_0	chr7	+	2424	6	FSM	ENSMUSG00000038239.12	ENSMUST00000085351.7	2411	6	-17	4	-17	-4	multi-exon	FALSE	canonical	1	1	junction_2	2.87054001888146	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGCAGTGTCCCGAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	44984696	44988394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44986799_44986884_44986956_44987310_44987380_44987577_44987633_44988112_44988150_44988304
ENSMUSG00000038240.14_0	chr10	+	2108	8	FSM	ENSMUSG00000038240.14	ENSMUST00000095725.11	2127	8	17	2	-14	-2	multi-exon	FALSE	canonical	3	61	junction_4	6.25316246521123	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAGAAAGTGTCTGCCTT	NA	False	NA	NA	False	ATTAAA	-26	NA	43097498	43316596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
ENSMUSG00000038241.17_3	chr2	+	7976	33	NIC	ENSMUSG00000038241.17	novel	7919	34	NA	NA	5	-1	intron_retention	FALSE	canonical	3	36	junction_1	22.1895245555194	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTTGGCTGCTGTCTCT	NA	False	NA	11	True	AATAAA	-18	NA	155798482	155840819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_155798583_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477_155809575_155810674_155810783_155811205_155811365_155811914_155812157_155812632_155812816_155813867_155814013_155815262_155815410_155816172_155816404_155817590_155817785_155818003_155818132_155818308_155818479_155821063_155821232_155821631_155821767_155823302_155823426_155825202_155825337_155827153_155827293_155827738_155828082_155828914_155829037_155830231_155830353_155831418_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
ENSMUSG00000038241.17_31	chr2	+	7407	29	ISM	ENSMUSG00000038241.17	ENSMUST00000109619.9	7977	33	7598	1	7562	-1	3prime_fragment	FALSE	canonical	3	45	junction_8	22.7101298983515	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTTGGCTGCTGTCTCT	NA	False	NA	11	True	AATAAA	-18	NA	155806075	155840819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155806196_155806908_155807016_155807232_155807485_155809477_155809575_155810674_155810783_155811205_155811365_155811914_155812157_155812632_155812816_155813867_155814013_155815262_155815410_155816172_155816404_155817590_155817785_155818003_155818132_155818308_155818479_155821063_155821232_155821631_155821767_155823302_155823426_155825202_155825337_155827153_155827293_155827738_155828082_155828914_155829037_155830231_155830353_155831418_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
ENSMUSG00000038241.17_47	chr2	+	4413	10	ISM	ENSMUSG00000038241.17	ENSMUST00000109619.9	7977	33	29273	1	-52	-1	3prime_fragment	FALSE	canonical	3	55	junction_2	26.5362551899505	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTTGGCTGCTGTCTCT	1606	False	NA	11	True	AATAAA	-18	NA	155827750	155840819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155828082_155828914_155829037_155830231_155830353_155831418_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
ENSMUSG00000038241.17_52	chr2	+	3826	7	ISM	ENSMUSG00000038241.17	ENSMUST00000148191.2	6361	15	13123	1	3597	-1	3prime_fragment	FALSE	canonical	3	76	junction_1	19.9311314279947	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTTGGCTGCTGTCTCT	5287	False	NA	11	True	AATAAA	-18	NA	155831431	155840819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
ENSMUSG00000038241.17_53	chr2	+	2914	6	ISM	ENSMUSG00000038241.17	ENSMUST00000148191.2	6361	15	14630	1	5104	-1	3prime_fragment	FALSE	canonical	3	82	junction_1	17.1813852759316	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTTGGCTGCTGTCTCT	6794	False	NA	11	True	AATAAA	-18	NA	155832938	155840819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
ENSMUSG00000038241.17_6	chr2	+	3027	18	NIC	ENSMUSG00000038241.17	novel	7919	34	NA	NA	0	2283	intron_retention	FALSE	canonical	3	36	junction_1	10.513461464823	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGTAAAAAATAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	155798477	155818648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_155798583_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477_155809575_155810674_155810783_155811205_155811365_155811914_155812157_155812632_155812816_155813867_155814013_155815262_155815410_155816172_155816404_155817590_155817785_155818003_155818132_155818308
ENSMUSG00000038241.17_73	chr2	+	5772	19	ISM	ENSMUSG00000038241.17	ENSMUST00000109619.9	7977	33	17768	3	-2063	-3	3prime_fragment	FALSE	canonical	3	46	junction_4	23.5253999847919	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTCCTTGGCTGCTGTCT	NA	False	NA	9	True	AATAAA	-16	NA	155816245	155840817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155816404_155817590_155817785_155818003_155818132_155818308_155818479_155821063_155821232_155821631_155821767_155823302_155823426_155825202_155825337_155827153_155827293_155827738_155828082_155828914_155829037_155830231_155830353_155831418_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
ENSMUSG00000038241.17_76	chr2	+	5005	15	ISM	ENSMUSG00000038241.17	ENSMUST00000109619.9	7977	33	22705	1	-295	-1	3prime_fragment	FALSE	canonical	3	55	junction_7	22.9974488381043	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTTGGCTGCTGTCTCT	NA	False	NA	11	True	AATAAA	-18	NA	155821182	155840819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155821232_155821631_155821767_155823302_155823426_155825202_155825337_155827153_155827293_155827738_155828082_155828914_155829037_155830231_155830353_155831418_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
ENSMUSG00000038244.15_0	chr7	+	6632	20	FSM	ENSMUSG00000038244.15	ENSMUST00000050149.12	6669	20	27	10	-7	-10	multi-exon	FALSE	canonical	0	0	junction_1	0.521026049295351	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGCTCACCGTTTCCTC	NA	False	NA	NA	False	AATAAA	-12	NA	111825089	111954391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_111825229_111834553_111834627_111870436_111870777_111902794_111903003_111906210_111906328_111908632_111908735_111910522_111910679_111914178_111914280_111917592_111917851_111918918_111919035_111919813_111919941_111920552_111920644_111921722_111921871_111922684_111922885_111923181_111923289_111927858_111927928_111931102_111931247_111945928_111946116_111948600_111948690_111950531
ENSMUSG00000038248.9_4	chr10	-	3148	6	ISM	ENSMUSG00000038248.9	ENSMUST00000040275.9	4980	7	-73	18472	-73	-18472	5prime_fragment	FALSE	canonical	0	0	junction_2	2.60768096208106	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGGCGTTCCTCCAA	NA	False	NA	NA	False	AATAAA	-13	NA	43050599	42896967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_42898915_42950588_42950685_43003774_43003927_43033903_43034090_43036701_43036841_43049971
ENSMUSG00000038248.9_5	chr10	-	3108	3	NNC	ENSMUSG00000038248.9	novel	4980	7	NA	NA	92674	-17579	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	1	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAACCGATTACAGAAAGA	NA	False	NA	NA	False	AATAAA	-9	NA	42957843	42896074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_42898915_42950588_42950685_42957671
ENSMUSG00000038250.10_0	chr8	-	4579	10	FSM	ENSMUSG00000038250.10	ENSMUST00000042724.8	4707	10	35	93	20	-93	multi-exon	FALSE	canonical	3	94	junction_4	8.95392871906924	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTTGTATATTTGGATT	NA	False	NA	-11	True	ATTAAA	-16	NA	81741522	81707454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_81708610_81711066_81712430_81714115_81714223_81716635_81716730_81719824_81720019_81722310_81722470_81727681_81727784_81731960_81732091_81738795_81738932_81740383
ENSMUSG00000038250.10_2	chr8	-	1923	2	ISM	ENSMUSG00000038250.10	ENSMUST00000042724.8	4707	10	29723	93	29708	-93	3prime_fragment	FALSE	canonical	3	102	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTTGTATATTTGGATT	NA	False	NA	-11	True	ATTAAA	-16	NA	81711834	81707454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_81708610_81711066
ENSMUSG00000038252.14_0	chr6	-	4496	32	FSM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	131	2	33	-2	multi-exon	FALSE	canonical	3	436	junction_21	78.9640126675822	992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCATCCTGTCCTGGCTGG	3526	False	NA	-11	True	AATAAA	-18	NA	125168533	125144971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
ENSMUSG00000038252.14_4	chr6	-	4536	32	NIC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-16	-2	combination_of_known_junctions	TRUE	canonical	3	50	junction_31	121.390529984967	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCATCCTGTCCTGGCTGG	3590	False	NA	-11	True	AATAAA	-18	NA	125168469	125144971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168356
ENSMUSG00000038256.16_1	chr3	-	3296	3	NNC	ENSMUSG00000038256.16	novel	4652	7	NA	NA	4770	-7	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	13.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACAGAACTGCCTTTT	NA	False	NA	-16	True	AATAAA	-14	NA	97116555	97110984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_97113258_97114462_97114724_97115793
ENSMUSG00000038256.16_11	chr3	-	2463	2	ISM	ENSMUSG00000038256.16	ENSMUST00000166341.2	4652	7	9207	-959	6709	-7	3prime_fragment	FALSE	canonical	3	23	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACAGAACTGCCTTTT	NA	False	NA	-16	True	AATAAA	-14	NA	97114616	97110984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_97113294_97114462
ENSMUSG00000038256.16_14	chr3	-	6070	10	NIC	ENSMUSG00000038256.16	novel	6102	10	NA	NA	39	-7	combination_of_known_junctions	FALSE	canonical	2	6	junction_9	11.4309521329882	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACAGAACTGCCTTTT	3715	False	NA	-16	True	AATAAA	-14	NA	97205194	97110984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_97113294_97114462_97114724_97115793_97118033_97120187_97120288_97121000_97121191_97122427_97122745_97123628_97123942_97129094_97129178_97131157_97131294_97205072
ENSMUSG00000038256.16_18	chr3	-	1643	5	ISM	ENSMUSG00000038256.16	ENSMUST00000046521.14	6102	10	-52	10855	-52	-33	5prime_fragment	FALSE	canonical	3	19	junction_4	10.0343161201947	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAACTAAAAAAAAAAA	NA	False	NA	NA	False	GGGGCT	-21	NA	97134732	97121832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_97122745_97123628_97123942_97129094_97129178_97131157_97131294_97134533
ENSMUSG00000038256.16_2	chr3	-	1600	1	ISM	ENSMUSG00000038256.16	ENSMUST00000046521.14	6102	10	22098	5	8743	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGAACTGCCTTTTTG	NA	False	NA	-14	True	AATAAA	-16	NA	97112582	97110982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_97111000_97112600
ENSMUSG00000038256.16_3	chr3	-	6063	10	NIC	ENSMUSG00000038256.16	novel	6102	10	NA	NA	-54	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	12.5678405974913	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACAGAACTGCCTTTT	NA	False	NA	-16	True	AATAAA	-14	NA	97134905	97110984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_97113294_97114462_97114724_97115793_97118033_97120187_97120288_97121000_97121191_97122427_97122745_97123628_97123942_97129094_97129178_97131157_97131294_97134790
ENSMUSG00000038256.16_5	chr3	-	6138	10	FSM	ENSMUSG00000038256.16	ENSMUST00000046521.14	6102	10	-43	7	-43	-7	multi-exon	FALSE	canonical	3	19	junction_9	9.10162107389884	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACAGAACTGCCTTTT	NA	False	NA	-16	True	AATAAA	-14	NA	97134723	97110984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_97113294_97114462_97114724_97115793_97118033_97120187_97120288_97121000_97121191_97122427_97122745_97123628_97123942_97129094_97129178_97131157_97131294_97134533
ENSMUSG00000038256.16_6	chr3	-	3257	3	ISM	ENSMUSG00000038256.16	ENSMUST00000166341.2	4652	7	7345	-961	4847	-5	3prime_fragment	FALSE	canonical	3	23	junction_1	8.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGAACTGCCTTTTTG	NA	False	NA	-14	True	AATAAA	-16	NA	97116478	97110982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_97113294_97114462_97114724_97115793
ENSMUSG00000038256.16_9	chr3	-	5553	7	FSM	ENSMUSG00000038256.16	ENSMUST00000166341.2	4652	7	58	-959	58	-7	multi-exon	FALSE	canonical	3	22	junction_4	9.51168871558685	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACAGAACTGCCTTTT	NA	False	NA	-16	True	AATAAA	-14	NA	97123765	97110984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_97113294_97114462_97114724_97115793_97118033_97120187_97120288_97121000_97121191_97122427_97122745_97123628
ENSMUSG00000038260.11_1	chr7	-	4031	25	FSM	ENSMUSG00000038260.11	ENSMUST00000042194.10	4234	25	0	203	0	0	multi-exon	FALSE	canonical	3	102	junction_19	18.3832181168949	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCGCACATGCTTGGCT	3201	False	NA	-10	True	AATAAA	-15	NA	44983193	44952781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44953117_44954032_44954139_44954218_44954292_44954371_44954505_44954712_44954919_44957667_44957846_44957967_44958143_44958521_44958655_44959700_44960124_44964018_44964097_44964404_44964518_44966198_44966345_44966429_44966560_44967459_44967595_44967762_44968105_44968665_44968779_44971211_44971312_44971422_44971615_44971744_44971807_44975986_44976171_44976400_44976565_44976695_44976877_44977144_44977320_44982805_44982877_44983110
ENSMUSG00000038264.9_0	chr9	+	3295	14	FSM	ENSMUSG00000038264.9	ENSMUST00000043059.9	3297	14	1	1	1	-1	multi-exon	TRUE	canonical	1	1	junction_4	2.43495258328376	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTGTCTGTGCCCTGTC	NA	False	NA	10	True	AATAAA	-15	NA	57847396	57870147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57847612_57860818_57860962_57861452_57861495_57861807_57861901_57862106_57862195_57862342_57862454_57862985_57863126_57863623_57863809_57864591_57864701_57864789_57864989_57867537_57867666_57867841_57867997_57868139_57868202_57868522
ENSMUSG00000038264.9_2	chr9	+	2861	11	ISM	ENSMUSG00000038264.9	ENSMUST00000043059.9	3297	14	14442	5	14442	-5	3prime_fragment	FALSE	canonical	1	1	junction_1	2.60959767013998	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTACCTGTGTCTGTGCCC	NA	False	NA	6	True	AATAAA	-11	NA	57861837	57870143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_57861901_57862106_57862195_57862342_57862454_57862985_57863126_57863623_57863809_57864591_57864701_57864789_57864989_57867537_57867666_57867841_57867997_57868139_57868202_57868522
ENSMUSG00000038264.9_3	chr9	+	2096	5	ISM	ENSMUSG00000038264.9	ENSMUST00000043059.9	3297	14	17466	2	17466	-2	3prime_fragment	FALSE	canonical	2	3	junction_2	2.6809513236909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGTGTCTGTGCCCTGT	NA	False	NA	9	True	AATAAA	-14	NA	57864861	57870146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_57864989_57867537_57867666_57867841_57867997_57868139_57868202_57868522
ENSMUSG00000038267.16_0	chr13	-	5814	10	FSM	ENSMUSG00000038267.16	ENSMUST00000148390.3	5496	10	-803	485	-72	-485	multi-exon	FALSE	canonical	3	13	junction_3	4.97648792812415	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATTTCCTCTGGAATGTC	NA	False	NA	NA	False	AATAAA	-17	NA	34529237	34363625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_34367295_34376138_34376263_34377376_34377410_34379234_34379468_34381784_34381888_34387899_34388028_34405885_34406055_34482979_34483135_34489140_34489245_34528141
ENSMUSG00000038267.16_3	chr13	-	3062	1	ISM	ENSMUSG00000038267.16	ENSMUST00000148390.3	5496	10	162217	15	11297	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTCTTCTCTCCATAGC	NA	False	NA	-1	True	AATAAA	-11	NA	34366217	34363155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_34363200_34366200
ENSMUSG00000038267.16_6	chr13	-	1776	5	FSM	ENSMUSG00000038267.16	ENSMUST00000143353.2	503	5	-1042	-231	-63	231	multi-exon	FALSE	canonical	0	0	junction_1	9.86154146165801	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATAGCCATTCTCATATA	NA	False	NA	NA	False	NA	NA	NA	34529228	34405121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_34405383_34405885_34406055_34482979_34483135_34489140_34489245_34528141
ENSMUSG00000038268.5_0	chr11	-	887	2	FSM	ENSMUSG00000038268.5	ENSMUST00000071562.3	2670	2	27	1756	-21	103	multi-exon	FALSE	canonical	3	105	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCCTTTCTCCTGCTGCC	1664	False	NA	-2	True	AATAAA	-19	NA	75069634	75068523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_75069214_75069437
ENSMUSG00000038268.5_1	chr11	-	1916	1	ISM	ENSMUSG00000038268.5	ENSMUST00000071562.3	2670	2	814	164	766	-164	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACCCTTTGGTCTATTT	2451	False	NA	-22	True	NA	NA	NA	75068847	75066931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_75066900_75068800
ENSMUSG00000038271.18_0	chr6	+	2833	9	NIC	ENSMUSG00000038271.18	novel	2283	10	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	12.7616368464237	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGTTGATTGAGCCTG	8229	False	NA	3	True	AATAAA	-10	NA	125122205	125138737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_125122993_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130126_125130369_125130466_125136024_125136156_125137495
ENSMUSG00000038271.18_12	chr6	+	3201	7	ISM	ENSMUSG00000038271.18	ENSMUST00000141230.8	3056	8	3412	2	-329	-2	3prime_fragment	FALSE	canonical	3	26	junction_3	11.6999525165228	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGTTGATTGAGCCTG	3153	False	NA	3	True	AATAAA	-10	NA	125125640	125138737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130466_125136024_125136156_125137495
ENSMUSG00000038271.18_14	chr6	+	2518	8	NIC	ENSMUSG00000038271.18	novel	2283	10	NA	NA	110	-2	intron_retention	FALSE	canonical	3	25	junction_5	12.2474487139159	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGTTGATTGAGCCTG	3592	False	NA	3	True	AATAAA	-10	NA	125126079	125138737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130126_125130369_125130466_125136024_125136156_125137495
ENSMUSG00000038271.18_24	chr6	+	3732	5	NIC	ENSMUSG00000038271.18	novel	3056	8	NA	NA	258	-2	intron_retention	FALSE	canonical	3	26	junction_1	13.838352503098	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGTTGATTGAGCCTG	4261	False	NA	3	True	AATAAA	-10	NA	125126748	125138737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_125128489_125129576_125129735_125130004_125130466_125136024_125136156_125137495
ENSMUSG00000038271.18_5	chr6	+	3160	9	NNC	ENSMUSG00000038271.18	novel	3056	8	NA	NA	3	-2	intron_retention	FALSE	canonical	2	8	junction_1	17.2898091371767	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGTTGATTGAGCCTG	8230	False	NA	3	True	AATAAA	-10	NA	125122206	125138737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_125122993_125126061_125126146_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130466_125136024_125136156_125137495
ENSMUSG00000038271.18_6	chr6	+	2827	9	FSM	ENSMUSG00000038271.18	ENSMUST00000119527.8	2840	9	5	8	-5	-2	multi-exon	FALSE	canonical	3	11	junction_6	15.028618532653	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGTTGATTGAGCCTG	8232	False	NA	3	True	AATAAA	-10	NA	125122208	125138737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125122993_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130126_125130372_125130466_125136024_125136156_125137495
ENSMUSG00000038274.14_0	chr19	+	543	5	FSM	ENSMUSG00000038274.14	ENSMUST00000178310.9	613	5	67	3	-31	0	multi-exon	FALSE	canonical	3	11442	junction_1	1294.53167207295	1641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTTATGTTTTCTTC	1049	False	NA	1	True	AATAAA	-13	NA	6107940	6109546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6108032_6108272_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUSG00000038274.14_1	chr19	+	500	5	FSM	ENSMUSG00000038274.14	ENSMUST00000043074.14	508	5	8	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_1	5677.26170790109	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTTATGTTTTCTTC	1089	False	NA	1	True	AATAAA	-13	NA	6107980	6109546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6108032_6108275_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUSG00000038279.11_0	chr6	+	2598	16	FSM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	-3	2	-3	-2	multi-exon	TRUE	canonical	0	0	junction_7	206.283558885983	1158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGCTGTTGTGTTTTTT	5434	False	NA	23	True	AATATA	-15	NA	125108868	125121714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
ENSMUSG00000038280.13_0	chr10	+	2979	6	FSM	ENSMUSG00000038280.13	ENSMUST00000040718.6	3006	6	22	5	22	-5	multi-exon	FALSE	canonical	3	210	junction_2	7.54718490564528	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATTGTAATGTTGTAAT	NA	False	NA	4	True	AATAAA	-13	NA	42554933	42578450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_42555394_42559155_42559271_42568906_42569005_42572245_42572414_42574103_42574270_42576478
ENSMUSG00000038280.13_15	chr10	+	1597	1	ISM	ENSMUSG00000038280.13	ENSMUST00000040718.6	3006	6	21942	5	21892	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATTGTAATGTTGTAAT	NA	False	NA	4	True	AATAAA	-13	NA	42576853	42578450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_42576900_42578400
ENSMUSG00000038286.12_0	chr13	+	1198	7	FSM	ENSMUSG00000038286.12	ENSMUST00000040656.8	1253	7	48	7	6	-4	multi-exon	FALSE	canonical	3	157	junction_3	28.0356915377524	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATTTGTAGTGTTCCTG	NA	False	NA	8	True	AATAAA	-10	NA	34221627	34258050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34247892_34248017_34257658
ENSMUSG00000038286.12_2	chr13	+	1033	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	4	-4	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	72.3972375163583	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATTTGTAGTGTTCCTG	NA	False	NA	8	True	AATAAA	-10	NA	34221625	34258050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_34221753_34228406_34228511_34234263_34234418_34244416_34244549_34247892_34248017_34257658
ENSMUSG00000038286.12_5	chr13	+	3869	5	FSM	ENSMUSG00000038286.12	ENSMUST00000221124.2	2009	5	10	-1870	-8	-277	multi-exon	FALSE	canonical	3	157	junction_3	18.4932420089069	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACACCTGGTCTTTCACT	NA	False	NA	NA	False	NA	NA	NA	34221631	34247739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416
ENSMUSG00000038286.12_6	chr13	+	1070	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	-8	-4	combination_of_known_junctions	FALSE	canonical	3	9	junction_5	69.9828550432176	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATTTGTAGTGTTCCTG	NA	False	NA	8	True	AATAAA	-10	NA	34221631	34258050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34257658
ENSMUSG00000038290.16_0	chr11	+	5835	19	FSM	ENSMUSG00000038290.16	ENSMUST00000045281.13	5848	19	5	8	5	-8	multi-exon	FALSE	canonical	3	122	junction_1	11.7104996677826	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATAATTGACCTCTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	74816653	75055266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_74816830_74819818_74821575_74822402_74822596_74823166_74823278_74825820_74825928_74826184_74826264_74836347_74836459_74836832_74837046_74872677_74872740_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986_75047141_75050001_75050214_75050650_75050733_75053645
ENSMUSG00000038290.16_1	chr11	+	3264	12	NIC	ENSMUSG00000038290.16	novel	5848	19	NA	NA	6	-8	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	41.9042592363683	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATAATTGACCTCTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	74816654	75055266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_74816830_74872677_74872740_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986_75047141_75050001_75050214_75050650_75050733_75053645
ENSMUSG00000038290.16_25	chr11	+	4832	18	ISM	ENSMUSG00000038290.16	ENSMUST00000045281.13	5848	19	3997	8	-700	-8	3prime_fragment	FALSE	canonical	3	125	junction_1	10.6543686314233	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATAATTGACCTCTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	74820645	75055266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_74821575_74822402_74822596_74823166_74823278_74825820_74825928_74826184_74826264_74836347_74836459_74836832_74837046_74872677_74872740_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986_75047141_75050001_75050214_75050650_75050733_75053645
ENSMUSG00000038290.16_42	chr11	+	1278	1	ISM	ENSMUSG00000038290.16	ENSMUST00000045281.13	5848	19	237340	8	3530	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATAATTGACCTCTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	75053988	75055266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75054000_75055300
ENSMUSG00000038290.16_64	chr11	+	2170	5	ISM	ENSMUSG00000038290.16	ENSMUST00000130145.8	4078	17	212283	8	10368	-8	3prime_fragment	FALSE	canonical	3	135	junction_2	7.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATAATTGACCTCTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	75033628	75055266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75033730_75046986_75047141_75050001_75050214_75050650_75050733_75053645
ENSMUSG00000038291.17_0	chr8	-	3725	19	FSM	ENSMUSG00000038291.17	ENSMUST00000110378.9	3445	19	-304	24	-304	-13	multi-exon	TRUE	canonical	3	42	junction_13	6.48288344625891	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAATATAAAAATGAAT	NA	False	NA	NA	False	NA	NA	NA	46605500	46486321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_46486860_46487438_46487540_46488574_46488757_46491491_46491559_46494353_46494472_46497004_46497170_46498222_46498337_46500327_46500469_46502402_46502535_46507355_46507518_46508884_46509161_46511503_46511636_46521092_46521275_46533258_46533330_46556551_46556739_46558155_46558329_46569218_46569436_46577098_46577184_46604818
ENSMUSG00000038292.15_0	chr7	-	1168	11	ISM	ENSMUSG00000038292.15	ENSMUST00000121017.5	2262	20	14761	1	-65	-1	3prime_fragment	FALSE	canonical	3	35	junction_4	6.66033032213868	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCACAGGATGATTTCCT	9340	False	NA	-5	True	NA	NA	NA	44839555	44833048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838035_44838124_44838276_44838342_44838764_44838825_44839060_44839118_44839373
ENSMUSG00000038292.15_1	chr7	-	1022	9	NIC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	-64	1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	18.6195461813654	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAGGATGATTTCCTCA	9341	False	NA	-3	True	NA	NA	NA	44839554	44833046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44837565_44837722_44838276_44838342_44838764_44838825_44839060_44839118_44839373
ENSMUSG00000038292.15_11	chr7	-	1250	10	NIC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	-63	-17	intron_retention	FALSE	canonical	3	35	junction_3	6.77868846340873	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCACATAGTAATGACTT	9342	False	NA	-21	True	NA	NA	NA	44839553	44833064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838035_44838124_44838276_44838342_44838764_44838825_44839060_44839118_44839373
ENSMUSG00000038292.15_12	chr7	-	2012	20	NNC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	394	-5	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_11	15.2344557716802	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACTTCACAGGATGATT	9472	False	NA	-9	True	NA	NA	NA	44853922	44833052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838035_44838124_44838276_44838342_44838764_44838825_44839060_44839118_44839373_44839452_44842599_44842651_44842882_44843001_44843383_44843546_44843773_44843841_44844952_44845018_44845391_44845579_44845930_44846036_44849668_44849810_44853866
ENSMUSG00000038292.15_17	chr7	-	1097	10	NIC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	-55	-5	combination_of_known_splicesites	FALSE	canonical	2	2	junction_9	14.1813649241218	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACTTCACAGGATGATT	9350	False	NA	-9	True	NA	NA	NA	44839545	44833052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838035_44838124_44838276_44838342_44838764_44838825_44839373
ENSMUSG00000038292.15_2	chr7	-	1000	9	NIC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	-48	1	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	12.0078099585228	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAGGATGATTTCCTCA	9357	False	NA	-3	True	NA	NA	NA	44839538	44833046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838764_44838825_44839060_44839118_44839373
ENSMUSG00000038292.15_3	chr7	-	479	4	ISM	ENSMUSG00000038292.15	ENSMUST00000121017.5	2262	20	19585	1	4759	-1	3prime_fragment	FALSE	canonical	3	47	junction_1	3.39934634239519	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCACAGGATGATTTCCT	NA	False	NA	-5	True	NA	NA	NA	44834731	44833048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701
ENSMUSG00000038292.15_4	chr7	-	1079	10	NIC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	-37	-3	combination_of_known_splicesites	FALSE	canonical	2	8	junction_4	12.720159949301	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTCACAGGATGATTTC	9368	False	NA	-7	True	NA	NA	NA	44839527	44833050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44837565_44837722_44838035_44838124_44838276_44838342_44838764_44838825_44839060_44839118_44839373
ENSMUSG00000038292.15_5	chr7	-	1081	10	NIC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	-70	-5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_6	14.7044966667419	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACTTCACAGGATGATT	9335	False	NA	-9	True	NA	NA	NA	44839560	44833052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838276_44838342_44838764_44838825_44839060_44839118_44839373
ENSMUSG00000038295.15_0	chr5	-	3387	14	FSM	ENSMUSG00000038295.15	ENSMUST00000059401.7	3902	14	336	179	336	-179	multi-exon	FALSE	canonical	0	0	junction_12	10.361512763374	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATTTTCAATCATTGTAA	9554	False	NA	NA	False	ATTAAA	-14	NA	24596805	24589357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24590070_24590221_24590362_24590443_24590568_24590750_24590848_24591005_24591140_24591307_24591545_24591945_24592126_24592384_24592542_24592686_24593442_24594778_24594921_24595459_24595622_24596014_24596080_24596201_24596246_24596367
ENSMUSG00000038295.15_1	chr5	-	1997	9	ISM	ENSMUSG00000038295.15	ENSMUST00000059401.7	3902	14	4238	180	61	-180	3prime_fragment	FALSE	canonical	3	11	junction_1	5.09748712602592	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTTTCAATCATTGTA	9355	False	NA	NA	False	ATTAAA	-13	NA	24592903	24589358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_24590070_24590221_24590362_24590443_24590568_24590750_24590848_24591005_24591140_24591307_24591545_24591945_24592126_24592384_24592542_24592686
ENSMUSG00000038295.15_5	chr5	-	2067	9	NIC	ENSMUSG00000038295.15	novel	1837	10	NA	NA	17	-186	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	7.95986023746648	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGTCTCATTTTCAATC	9311	False	NA	NA	False	ATTAAA	-7	NA	24592947	24589364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_24590070_24590221_24590362_24590443_24590568_24590750_24590848_24591005_24591140_24591307_24591545_24591945_24592126_24592384_24592542_24592654
ENSMUSG00000038298.15_0	chr3	+	2507	9	FSM	ENSMUSG00000038298.15	ENSMUST00000058865.14	2406	9	-115	14	-115	-14	multi-exon	FALSE	canonical	3	10	junction_1	6.6226410894748	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCTAAAATCTATTTGGT	7604	False	NA	NA	False	AATAAA	-8	NA	96737276	96778228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96737473_96757543_96757756_96758806_96759057_96761849_96761987_96763170_96763367_96764510_96764708_96775623_96775849_96776256_96776548_96777425
ENSMUSG00000038298.15_1	chr3	+	2026	10	NIC	ENSMUSG00000038298.15	novel	2406	9	NA	NA	7	2	intron_retention	FALSE	canonical	1	2	junction_1	8.45175122477183	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGTTATAGAAGTGTG	7113	False	NA	NA	False	ATTAAA	-12	NA	96736785	96777790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_96736866_96737399_96737473_96757543_96757756_96758806_96759057_96761849_96761987_96763170_96763367_96764510_96764708_96775623_96775849_96776256_96776548_96777425
ENSMUSG00000038298.15_2	chr3	+	1953	9	NNC	ENSMUSG00000038298.15	novel	531	2	NA	NA	-7	2	intron_retention	FALSE	canonical	1	1	junction_1	8.68907359849138	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGTTATAGAAGTGTG	NA	False	NA	NA	False	ATTAAA	-12	NA	96740534	96777790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_96740615_96757543_96757756_96758806_96759057_96761849_96761987_96763170_96763367_96764510_96764708_96775623_96775849_96776256_96776548_96777425
ENSMUSG00000038298.15_3	chr3	+	2235	9	NIC	ENSMUSG00000038298.15	novel	531	2	NA	NA	15	0	intron_retention	FALSE	canonical	2	4	junction_1	7.93626958967499	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCCTGTTATAGAAGTG	NA	False	NA	NA	False	ATTAAA	-10	NA	96740556	96777788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_96740921_96757543_96757756_96758806_96759057_96761849_96761987_96763170_96763367_96764510_96764708_96775623_96775849_96776256_96776548_96777425
ENSMUSG00000038299.17_0	chr18	+	2820	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	69	1566	-17	-372	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGCTATGTGCCAAGTG	9033	False	NA	8	True	AATAAA	-19	NA	32970346	32999081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
ENSMUSG00000038299.17_11	chr18	+	3154	24	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	-17	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	158.489013770111	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCAGTGGGTTCTTTTTT	9033	False	NA	11	True	ATTAAA	-4	NA	32970346	32999450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32999191_32999225
ENSMUSG00000038299.17_4	chr18	+	2902	24	FSM	ENSMUSG00000038299.17	ENSMUST00000166214.9	2906	24	-10	14	-10	-14	multi-exon	FALSE	canonical	3	29	junction_23	153.127237455201	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATTAAAAAGAAATCAGTG	9040	False	NA	0	True	TATAAA	-13	NA	32970353	32999439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32998972_32999240
ENSMUSG00000038301.16_1	chr6	+	2435	7	FSM	ENSMUSG00000038301.16	ENSMUST00000049152.15	2480	7	31	14	31	-5	multi-exon	FALSE	canonical	3	298	junction_5	39.9433626804532	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAAACAAAACTTTGT	NA	False	NA	NA	False	ATTAAA	-10	NA	51500911	51567645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_51501015_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
ENSMUSG00000038301.16_13	chr6	+	2435	7	FSM	ENSMUSG00000038301.16	ENSMUST00000179365.8	2464	7	24	5	-19	-5	multi-exon	FALSE	canonical	3	50	junction_1	112.931272118144	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAAACAAAACTTTGT	NA	False	NA	NA	False	ATTAAA	-10	NA	51521526	51567645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_51521630_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
ENSMUSG00000038301.16_2	chr6	+	2525	8	NNC	ENSMUSG00000038301.16	novel	2480	7	NA	NA	-25	-5	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	142.424917563105	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAAAACAAAACTTTGT	NA	False	NA	NA	False	ATTAAA	-10	NA	51500936	51567645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_51501015_51538997_51539045_51546773_51546889_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
ENSMUSG00000038302.15_2	chr10	-	2330	13	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	9300	-1	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_12	15.99717857068	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAGCTTGTCTGATTCAT	NA	False	NA	0	True	AATAAA	-17	NA	42344976	42188581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42344855
ENSMUSG00000038302.15_4	chr10	-	2239	12	NIC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	-64	-1	combination_of_known_splicesites	FALSE	canonical	3	29	junction_10	11.696577164084	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAGCTTGTCTGATTCAT	NA	False	NA	0	True	AATAAA	-17	NA	42354340	42188581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42330302_42330527_42354258
ENSMUSG00000038302.15_7	chr10	-	2355	12	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	3148	-1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_11	18.3127106650224	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAGCTTGTCTGATTCAT	NA	False	NA	0	True	AATAAA	-17	NA	42351128	42188581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42330302_42330527_42350930
ENSMUSG00000038302.15_9	chr10	-	2364	13	FSM	ENSMUSG00000038302.15	ENSMUST00000041024.15	2513	13	148	1	-2	-1	multi-exon	FALSE	canonical	3	47	junction_11	7.72801541291309	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAGCTTGTCTGATTCAT	NA	False	NA	0	True	AATAAA	-17	NA	42354413	42188581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42354258
ENSMUSG00000038305.16_0	chr1	+	2463	14	NIC	ENSMUSG00000038305.16	novel	2315	13	NA	NA	-61	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	18.2941126107012	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTGGCTTGCTCTTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	57813832	57986123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_57813961_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985226
ENSMUSG00000038305.16_1	chr1	+	2433	14	NIC	ENSMUSG00000038305.16	novel	2315	13	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	16.1274509627595	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTGGCTTGCTCTTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	57813859	57986123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_57813961_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985229
ENSMUSG00000038305.16_2	chr1	+	2490	14	FSM	ENSMUSG00000038305.16	ENSMUST00000167085.8	3929	14	9	1430	9	0	multi-exon	FALSE	canonical	3	22	junction_13	12.6939392890685	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTGGCTTGCTCTTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	57814028	57986123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_57814184_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985226
ENSMUSG00000038305.16_3	chr1	+	2496	14	NIC	ENSMUSG00000038305.16	novel	3929	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_5	8.58855713199065	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTGGCTTGCTCTTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	57814019	57986123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_57814184_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985229
ENSMUSG00000038305.16_4	chr1	+	2273	13	NIC	ENSMUSG00000038305.16	novel	3929	14	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_7	16.9777223312067	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTGGCTTGCTCTTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	57814035	57986123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_57814184_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985229
ENSMUSG00000038305.16_9	chr1	+	2279	13	NIC	ENSMUSG00000038305.16	novel	3929	14	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_7	19.1485421551268	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTGGCTTGCTCTTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	57814032	57986123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_57814184_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985226
ENSMUSG00000038312.11_1	chr2	-	1872	11	FSM	ENSMUSG00000038312.11	ENSMUST00000040833.5	2290	11	67	351	67	-351	multi-exon	TRUE	canonical	3	287	junction_6	17.8672885463911	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGGTTTTACATGCTGGA	NA	False	NA	-12	True	AATAAA	-14	NA	155571328	155543947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155544513_155547574_155547697_155550851_155550997_155552763_155552889_155555257_155555400_155557929_155558142_155560183_155560310_155564351_155564458_155568554_155568595_155570810_155570922_155571150
ENSMUSG00000038312.11_4	chr2	-	2101	10	ISM	ENSMUSG00000038312.11	ENSMUST00000040833.5	2290	11	67	351	67	-351	intron_retention	FALSE	canonical	3	287	junction_6	14.4435897183012	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGGTTTTACATGCTGGA	NA	False	NA	-12	True	AATAAA	-14	NA	155571328	155543947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_155544513_155547574_155547697_155550851_155550997_155552763_155552889_155555257_155555400_155557929_155558142_155560183_155560310_155564351_155564458_155568554_155568595_155570810
ENSMUSG00000038319.15_0	chr5	-	4269	15	FSM	ENSMUSG00000038319.15	ENSMUST00000036092.10	4221	15	-75	27	-75	-27	multi-exon	FALSE	canonical	3	15	junction_8	4.79157423749955	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTCCAGGGTGCTGGTT	NA	False	NA	-33	True	NA	NA	NA	24556677	24524613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943_24527220_24527652_24527753_24528068_24528263_24529330_24529584_24529953_24530154_24530491_24530880_24531346_24531776_24535908_24536121_24536660_24537111_24537889_24538055_24553308_24553540_24556205
ENSMUSG00000038319.15_12	chr5	-	3836	14	NIC	ENSMUSG00000038319.15	novel	4221	15	NA	NA	213	6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	7.24466749413606	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCTGTATCTCATGTTT	NA	False	NA	0	True	NA	NA	NA	24556389	24524580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_24525148_24526633_24526821_24526943_24527220_24527652_24527753_24528068_24528263_24529330_24529584_24529953_24530154_24530491_24530880_24531346_24531776_24535908_24536121_24536660_24537111_24537889_24538055_24553308_24553540_24556205
ENSMUSG00000038319.15_3	chr5	-	3951	15	NNC	ENSMUSG00000038319.15	novel	4221	15	NA	NA	-63	-26	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	7.29830844253989	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCCAGGGTGCTGGTTA	NA	False	NA	-32	True	NA	NA	NA	24556665	24524612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943_24527220_24527652_24527753_24528068_24528263_24529330_24529584_24529953_24530154_24530491_24530880_24531346_24531776_24535908_24536121_24536660_24537111_24537889_24538055_24553308_24553540_24556512
ENSMUSG00000038319.15_6	chr5	-	2605	10	ISM	ENSMUSG00000038319.15	ENSMUST00000115098.7	3193	11	2949	26	-123	-26	3prime_fragment	FALSE	canonical	3	15	junction_8	5.1207638319124	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCCAGGGTGCTGGTTA	9352	False	NA	-32	True	NA	NA	NA	24531640	24524612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943_24527220_24527652_24527753_24528068_24528263_24529330_24529584_24529953_24530154_24530491_24530880_24531346
ENSMUSG00000038319.15_8	chr5	-	2996	12	ISM	ENSMUSG00000038319.15	ENSMUST00000036092.10	4221	15	19900	24	-2113	-24	3prime_fragment	FALSE	canonical	3	15	junction_8	5.2270750950782	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCAGGGTGCTGGTTAGC	4290	False	NA	-30	True	NA	NA	NA	24536702	24524610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943_24527220_24527652_24527753_24528068_24528263_24529330_24529584_24529953_24530154_24530491_24530880_24531346_24531776_24535908_24536121_24536660
ENSMUSG00000038323.4_0	chr1	+	3090	3	NIC	ENSMUSG00000038323.4	novel	541	3	NA	NA	-3	-7	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	2.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAAATGTTATTTGGATG	NA	False	NA	1	True	ATTAAA	-12	NA	57416795	57424575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_57417106_57418865_57418972_57421901
ENSMUSG00000038323.4_1	chr1	+	2980	2	FSM	ENSMUSG00000038323.4	ENSMUST00000042734.3	3008	2	21	7	1	-7	multi-exon	FALSE	canonical	3	44	junction_1	0	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAAATGTTATTTGGATG	NA	False	NA	1	True	ATTAAA	-12	NA	57416799	57424575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_57417106_57421901
ENSMUSG00000038323.4_5	chr1	+	2058	1	ISM	ENSMUSG00000038323.4	ENSMUST00000042734.3	3008	2	5739	7	5719	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAAATGTTATTTGGATG	NA	False	NA	1	True	ATTAAA	-12	NA	57422517	57424575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_57422500_57424600
ENSMUSG00000038324.14_0	chr2	-	3135	19	FSM	ENSMUSG00000038324.14	ENSMUST00000041059.12	3204	19	53	16	1	-16	multi-exon	FALSE	canonical	3	309	junction_12	37.6501520663235	820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGACTGATGTGGACCTG	NA	False	NA	-9	True	AATAAA	-35	NA	155534251	155476206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155477061_155477155_155477363_155478115_155478229_155479577_155479687_155479967_155480109_155481392_155481484_155482393_155482478_155483508_155483611_155485311_155485371_155486847_155486980_155492338_155492506_155495412_155495599_155499655_155499864_155505576_155505706_155508121_155508178_155510331_155510390_155512959_155513077_155514909_155515039_155534058
ENSMUSG00000038324.14_1	chr2	-	3112	19	FSM	ENSMUSG00000038324.14	ENSMUST00000103140.5	3091	19	1	-22	1	-15	multi-exon	TRUE	canonical	3	16	junction_11	88.2006865682525	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTGATGTGGACCTGA	NA	False	NA	-8	True	AATAAA	-36	NA	155534251	155476205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155477061_155477155_155477363_155478115_155478229_155479577_155479687_155479967_155480109_155481392_155481484_155482393_155482478_155483508_155483611_155485311_155485371_155486847_155486980_155492338_155492482_155495412_155495599_155499655_155499864_155505576_155505706_155508121_155508178_155510331_155510390_155512959_155513077_155514909_155515039_155534058
ENSMUSG00000038331.16_0	chr1	-	4062	5	ISM	ENSMUSG00000038331.16	ENSMUST00000177424.2	4694	7	98327	-4	98295	2	3prime_fragment	FALSE	canonical	1	1	junction_2	3.24037034920393	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTGTTTGTCAAATAG	NA	False	NA	-27	True	AATAAA	-17	NA	56910704	56833142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_56836404_56870597_56870796_56884734_56884891_56889329_56889543_56910470
ENSMUSG00000038331.16_1	chr1	-	1380	1	ISM	ENSMUSG00000038331.16	ENSMUST00000042857.14	6277	10	177131	11	174469	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATCTGACTTTGTTTG	NA	False	NA	-35	True	AATAAA	-9	NA	56834530	56833150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_56833200_56834500
ENSMUSG00000038331.16_7	chr1	-	4920	10	ISM	ENSMUSG00000038331.16	ENSMUST00000114415.10	5805	11	2110	6	92	-4	3prime_fragment	FALSE	canonical	1	1	junction_2	2.3094010767585	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATCTGACTTTGTTTG	NA	False	NA	-35	True	AATAAA	-9	NA	57008907	56833150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_56836404_56870597_56870796_56884734_56884891_56889329_56889543_56910470_56910944_56930321_56930425_56937104_56937229_56938149_56938277_56987237_56987415_57008811
ENSMUSG00000038332.14_1	chr10	+	3544	10	FSM	ENSMUSG00000038332.14	ENSMUST00000099931.11	3809	10	262	3	262	-3	multi-exon	FALSE	canonical	3	40	junction_1	18.7662686623146	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTTGCTTTATTAATTT	254	False	NA	5	True	AATAAA	-12	NA	41686192	41784417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_41687297_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
ENSMUSG00000038332.14_10	chr10	+	4951	9	NIC	ENSMUSG00000038332.14	novel	3809	10	NA	NA	224	-3	intron_retention	FALSE	canonical	3	40	junction_1	19.5320249846246	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTTGCTTTATTAATTT	216	False	NA	5	True	AATAAA	-12	NA	41686154	41784417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_41687297_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41781361_41782331_41782477_41783267
ENSMUSG00000038332.14_3	chr10	+	2596	10	FSM	ENSMUSG00000038332.14	ENSMUST00000041438.7	2600	10	1	3	1	-3	multi-exon	FALSE	canonical	3	34	junction_1	20.085619202938	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTTGCTTTATTAATTT	NA	False	NA	5	True	AATAAA	-12	NA	41763435	41784417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_41763592_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
ENSMUSG00000038335.14_1	chr11	+	3368	15	FSM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	15	6	-5	-6	multi-exon	FALSE	canonical	3	655	junction_8	75.3882467968452	1438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACTGGCTTGTCTGGATT	NA	False	NA	20	True	AATAAA	-12	NA	74788918	74800162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
ENSMUSG00000038335.14_8	chr11	+	3368	15	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-6	-6	intron_retention	FALSE	non_canonical	0	0	junction_3	213.547454459477	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACTGGCTTGTCTGGATT	NA	False	NA	20	True	AATAAA	-12	NA	74788917	74800162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_74789042_74789202_74789307_74790007_74790227_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
ENSMUSG00000038342.16_0	chr5	+	7278	17	FSM	ENSMUSG00000038342.16	ENSMUST00000068237.12	7303	17	19	6	19	-3	multi-exon	TRUE	canonical	3	7	junction_15	14.8438486838825	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAAGGTTGTTCTGTGTG	NA	False	NA	14	True	AATAAA	-15	NA	123532881	123595989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_123533406_123578098_123578206_123578875_123578962_123580344_123580435_123580790_123580833_123581092_123581265_123581938_123582029_123582507_123582600_123583530_123584186_123585240_123585363_123585481_123585639_123587352_123587478_123587958_123588058_123588158_123588287_123588489_123588614_123590600_123590731_123591454
ENSMUSG00000038342.16_4	chr5	+	3011	1	ISM	ENSMUSG00000038342.16	ENSMUST00000068237.12	7303	17	60117	5	3459	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAAGGTTGTTCTGTGTGA	NA	False	NA	15	True	AATAAA	-16	NA	123592979	123595990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_123593000_123596000
ENSMUSG00000038344.15_0	chrX	-	3766	10	FSM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	89	7	89	-7	multi-exon	FALSE	canonical	3	89	junction_4	53.4535681747934	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTAACAGCTTCTGTG	NA	False	NA	NA	False	AGTAAA	-10	NA	161612361	161561921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
ENSMUSG00000038344.15_2	chrX	-	2258	1	ISM	ENSMUSG00000038344.15	ENSMUST00000131463.2	5399	8	31298	7	31298	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTAACAGCTTCTGTG	NA	False	NA	NA	False	AGTAAA	-10	NA	161564179	161561921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_161561900_161564200
ENSMUSG00000038344.15_21	chrX	-	2607	5	ISM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	89	9975	89	23	5prime_fragment	FALSE	canonical	3	191	junction_2	21.2132034355964	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGATTTCTTTGTCCTGT	NA	False	NA	17	True	AATAAA	-40	NA	161612361	161571889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
ENSMUSG00000038344.15_23	chrX	-	2458	6	FSM	ENSMUSG00000038344.15	ENSMUST00000112315.2	2525	6	80	-13	80	12	multi-exon	FALSE	canonical	3	54	junction_4	64.8382603097893	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTCCAAAATACAAGATTT	NA	False	NA	6	True	AATAAA	-29	NA	161612370	161571900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
ENSMUSG00000038344.15_4	chrX	-	3617	11	FSM	ENSMUSG00000038344.15	ENSMUST00000112316.9	3715	11	90	8	90	-8	multi-exon	FALSE	canonical	3	54	junction_9	58.6501491899211	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAATTAACAGCTTCTGT	NA	False	NA	NA	False	AGTAAA	-9	NA	161612360	161561922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
ENSMUSG00000038344.15_6	chrX	-	3411	9	ISM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	18089	5	1116	-5	3prime_fragment	FALSE	canonical	3	89	junction_4	53.4028030631352	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAACAGCTTCTGTGTA	NA	False	NA	NA	False	AGTAAA	-12	NA	161594361	161561919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287
ENSMUSG00000038346.19_0	chr6	+	3107	11	FSM	ENSMUSG00000038346.19	ENSMUST00000112428.8	3132	11	-199	224	-106	4	multi-exon	FALSE	canonical	0	0	junction_7	64.1467068523397	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTGATGTTTTATTTTT	NA	False	NA	10	True	TATAAA	-22	NA	124986001	125014604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124986463_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125002810_125002904_125007760_125007986_125010202_125010282_125012675_125012835_125013268
ENSMUSG00000038346.19_1	chr6	+	2839	10	NIC	ENSMUSG00000038346.19	novel	3132	11	NA	NA	-10	7	combination_of_known_junctions	FALSE	canonical	3	84	junction_7	42.3661290288467	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGATGTTTTATTTTTGTC	NA	False	NA	13	True	TATAAA	-25	NA	124986179	125014607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_124986463_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125007760_125007986_125010202_125010282_125012675_125012835_125013268
ENSMUSG00000038346.19_10	chr6	+	3169	11	FSM	ENSMUSG00000038346.19	ENSMUST00000112427.8	3072	11	-222	125	-84	-2	multi-exon	FALSE	canonical	3	80	junction_7	45.3595634899632	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCATATTGATGTTTT	NA	False	NA	4	True	TATAAA	-16	NA	124986023	125014598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124986463_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125007760_125007986_125008633_125008817_125010202_125010282_125012675_125012835_125013268
ENSMUSG00000038346.19_19	chr6	+	3042	12	NIC	ENSMUSG00000038346.19	novel	3603	12	NA	NA	-112	4	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	68.436131774315	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTGATGTTTTATTTTT	NA	False	NA	10	True	TATAAA	-22	NA	124985995	125014604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_124986209_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125002810_125002904_125007760_125007986_125008633_125008817_125010202_125010282_125012675_125012835_125013268
ENSMUSG00000038346.19_24	chr6	+	2853	11	NIC	ENSMUSG00000038346.19	novel	3603	12	NA	NA	-112	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	70.3565917309814	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCATATTGATGTTTT	NA	False	NA	4	True	TATAAA	-16	NA	124985995	125014598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_124986209_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125002810_125002904_125007760_125007986_125010202_125010282_125012675_125012835_125013268
ENSMUSG00000038346.19_4	chr6	+	2989	10	NIC	ENSMUSG00000038346.19	novel	3603	12	NA	NA	-115	-4	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	54.4360537752075	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGATGAGAGGCAGTGAGC	NA	False	NA	-1	True	AATAAA	-10	NA	124985992	125014824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_124986209_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125007760_125007986_125010202_125010282_125012675_125012835_125013268
ENSMUSG00000038346.19_7	chr6	+	3294	12	NIC	ENSMUSG00000038346.19	novel	3072	11	NA	NA	-111	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	63.0599871826111	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATATTGATGTTTTATTTT	NA	False	NA	9	True	TATAAA	-21	NA	124985996	125014603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_124986463_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125002810_125002904_125007760_125007986_125008633_125008817_125010202_125010282_125012675_125012835_125013268
ENSMUSG00000038346.19_9	chr6	+	2943	11	NIC	ENSMUSG00000038346.19	novel	3603	12	NA	NA	-112	-2	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	54.9912720347511	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCATATTGATGTTTT	NA	False	NA	4	True	TATAAA	-16	NA	124985995	125014598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_124986209_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125007760_125007986_125008633_125008817_125010202_125010282_125012675_125012835_125013268
ENSMUSG00000038347.16_0	chr17	-	1405	3	FSM	ENSMUSG00000038347.16	ENSMUST00000148430.2	1839	3	432	2	-7	-2	multi-exon	FALSE	canonical	1	1	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTTTTGGCCTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	13981655	13936699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_13937896_13948183_13948285_13981547
ENSMUSG00000038351.15_0	chr11	-	973	1	ISM	ENSMUSG00000038351.15	ENSMUST00000057631.12	4743	23	46824	3	10339	2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGGCTCTGATGGCTAT	NA	False	NA	-6	True	AATAAA	-16	NA	74741062	74740089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_74740100_74741100
ENSMUSG00000038351.15_1	chr11	-	4751	23	FSM	ENSMUSG00000038351.15	ENSMUST00000057631.12	4743	23	-15	7	-15	-2	multi-exon	FALSE	canonical	3	35	junction_12	13.4016928744404	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGAGGCTCTGATGG	NA	False	NA	-10	True	AATAAA	-12	NA	74787901	74740093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_74741722_74741924_74742093_74742565_74742663_74743900_74744011_74744150_74744234_74744611_74744737_74744954_74745336_74748443_74748627_74748876_74749006_74749454_74749601_74749686_74749752_74750571_74750726_74755910_74756038_74756186_74756348_74757394_74757463_74757856_74757982_74758436_74758572_74758806_74758953_74759049_74759118_74759402_74759565_74759840_74760004_74782821_74782898_74787650
ENSMUSG00000038351.15_21	chr11	-	4426	20	NIC	ENSMUSG00000038351.15	novel	4743	23	NA	NA	-29	-2	combination_of_known_splicesites	FALSE	canonical	1	3	junction_15	22.17695142519	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGAGGCTCTGATGG	NA	False	NA	-10	True	AATAAA	-12	NA	74787915	74740093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_74741722_74741924_74742093_74742565_74742663_74743900_74744011_74744150_74744234_74744611_74744737_74744954_74745336_74748443_74748627_74748876_74749006_74749454_74749601_74749686_74749752_74750571_74750726_74755910_74756038_74756186_74756348_74757394_74757463_74758436_74758572_74759402_74759565_74759840_74760004_74782821_74782898_74787650
ENSMUSG00000038351.15_3	chr11	-	2815	9	NNC	ENSMUSG00000038351.15	novel	4743	23	NA	NA	2629	-2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_8	18.6681547025945	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGAGGCTCTGATGG	7955	False	NA	-10	True	AATAAA	-12	NA	74748772	74740093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_74741722_74741924_74742093_74742565_74742663_74743900_74744011_74744150_74744234_74744611_74744737_74744954_74745336_74748443_74748627_74748732
ENSMUSG00000038351.15_30	chr11	-	2895	8	ISM	ENSMUSG00000038351.15	ENSMUST00000081799.6	4873	24	39140	2	2655	-2	3prime_fragment	FALSE	canonical	3	54	junction_4	7.7643875666864	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGAGGCTCTGATGG	7981	False	NA	-10	True	AATAAA	-12	NA	74748746	74740093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_74741722_74741924_74742093_74742565_74742663_74743900_74744011_74744150_74744234_74744611_74744737_74744954_74745336_74748443
ENSMUSG00000038351.15_5	chr11	-	4883	24	FSM	ENSMUSG00000038351.15	ENSMUST00000081799.6	4873	24	-12	2	-12	-2	multi-exon	TRUE	canonical	3	24	junction_12	16.1025776095344	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGAGGCTCTGATGG	NA	False	NA	-10	True	AATAAA	-12	NA	74787898	74740093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_74741722_74741924_74742093_74742565_74742663_74743900_74744011_74744150_74744234_74744611_74744737_74744954_74745336_74748443_74748627_74748876_74749006_74749454_74749601_74749686_74749752_74750571_74750726_74754385_74754521_74755910_74756038_74756186_74756348_74757394_74757463_74757856_74757982_74758436_74758572_74758806_74758953_74759049_74759118_74759402_74759565_74759840_74760004_74782821_74782898_74787650
ENSMUSG00000038352.16_1	chr11	-	1268	6	FSM	ENSMUSG00000038352.16	ENSMUST00000042971.16	1571	6	299	4	47	-4	multi-exon	FALSE	canonical	1	2	junction_2	2.57681974534503	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACGCCTCACTTCTTATT	NA	False	NA	-1	True	ATTAAA	-22	NA	97886708	97880407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97881166_97883107_97883260_97884250_97884335_97885163_97885312_97885892_97885954_97886643
ENSMUSG00000038352.16_3	chr11	-	1351	4	ISM	ENSMUSG00000038352.16	ENSMUST00000042971.16	1571	6	1484	7	1232	-7	3prime_fragment	FALSE	canonical	1	2	junction_2	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAAACGCCTCACTTCTT	NA	False	NA	-4	True	ATTAAA	-19	NA	97885523	97880410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97881166_97883107_97883260_97884250_97884335_97885163
ENSMUSG00000038352.16_4	chr11	-	101	1	ISM	ENSMUSG00000038352.16	ENSMUST00000107563.2	823	3	1985	8	1985	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACAAAAGATAAAA	NA	False	NA	NA	False	NA	NA	NA	97884770	97884669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97884700_97884800
ENSMUSG00000038354.14_0	chr3	+	3855	13	FSM	ENSMUSG00000038354.14	ENSMUST00000048427.9	4052	13	197	0	1	0	multi-exon	FALSE	canonical	3	6	junction_1	35.4200978730061	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTATTGTTGTGGTTTTTG	468	False	NA	16	True	AATAAA	-16	NA	96577643	96598348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96577766_96585448_96585580_96586495_96586585_96586945_96587011_96587786_96587845_96587942_96588014_96588277_96588385_96589342_96589528_96590309_96590348_96590498_96592491_96596461_96596552_96596760_96596827_96597507
ENSMUSG00000038354.14_1	chr3	+	3308	14	NIC	ENSMUSG00000038354.14	novel	3295	14	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	34.4249462320121	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTCCTATTGTTGTGG	467	False	NA	10	True	AATAAA	-10	NA	96577642	96598342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_96577766_96585448_96585580_96586495_96586585_96586945_96587011_96587786_96587845_96587942_96588014_96588277_96588385_96589342_96589528_96590309_96590348_96590498_96592491_96596461_96596552_96596760_96596827_96597507_96597613_96598154
ENSMUSG00000038354.14_16	chr3	+	2643	7	ISM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	11704	0	1938	0	3prime_fragment	FALSE	canonical	3	17	junction_2	35.9324211386999	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAGCAGAAAACAGA	NA	False	NA	-7	True	NA	NA	NA	96589346	96598325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96589528_96590309_96590348_96590498_96592491_96596461_96596552_96596760_96596827_96597507_96597613_96598154
ENSMUSG00000038354.14_17	chr3	+	1753	4	ISM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	14088	-19	4322	-4	intron_retention	FALSE	canonical	3	87	junction_1	10.2740233382816	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTCCTATTGTTGTGGTT	NA	False	NA	12	True	AATAAA	-12	NA	96591730	96598344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96592491_96596461_96596552_96596760_96596827_96597507
ENSMUSG00000038354.14_18	chr3	+	868	5	ISM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	14429	-17	4663	-6	3prime_fragment	FALSE	canonical	3	58	junction_4	19.7294196569489	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTCCTATTGTTGTGG	NA	False	NA	10	True	AATAAA	-10	NA	96592071	96598342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96592491_96596461_96596552_96596760_96596827_96597507_96597613_96598154
ENSMUSG00000038354.14_19	chr3	+	3110	3	ISM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	13412	-19	3646	-4	intron_retention	FALSE	canonical	3	87	junction_1	5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTCCTATTGTTGTGGTT	NA	False	NA	12	True	AATAAA	-12	NA	96591054	96598344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96592491_96596461_96596552_96596760
ENSMUSG00000038354.14_31	chr3	+	3189	6	ISM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	11710	-10	1944	10	intron_retention	FALSE	canonical	3	17	junction_2	39.1744814898679	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACAGATGGTCCTATT	NA	False	NA	3	True	AATAAA	-3	NA	96589352	96598335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96589528_96590309_96590348_96590498_96592491_96596461_96596552_96596760_96596827_96597507
ENSMUSG00000038365.9_0	chr8	+	2019	10	FSM	ENSMUSG00000038365.9	ENSMUST00000043520.5	2012	10	-14	7	-14	-6	multi-exon	FALSE	canonical	3	86	junction_9	11.3572731903828	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTATATAATTTTTCTG	NA	False	NA	7	True	AATAAA	-13	NA	13957788	13990515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13989562
ENSMUSG00000038365.9_1	chr8	+	2015	10	NIC	ENSMUSG00000038365.9	novel	2035	11	NA	NA	-13	-6	combination_of_known_junctions	FALSE	canonical	2	19	junction_7	29.6514734295483	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTATATAATTTTTCTG	NA	False	NA	7	True	AATAAA	-13	NA	13957789	13990515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981184_13981365_13985145_13985290_13989562
ENSMUSG00000038365.9_22	chr8	+	2045	1	NIC	ENSMUSG00000038365.9	novel	2035	11	NA	NA	5	-10	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAGTTATATAATTTT	NA	False	NA	3	True	AATAAA	-9	NA	13988466	13990511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_13988500_13990500
ENSMUSG00000038365.9_4	chr8	+	2052	11	NIC	ENSMUSG00000038365.9	novel	2035	11	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_9	39.2779836549688	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAATTTTTCTGCAACAA	NA	False	NA	13	True	AATAAA	-19	NA	13957788	13990521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13988921_13988949_13989562
ENSMUSG00000038366.16_2	chr11	+	3431	7	FSM	ENSMUSG00000038366.16	ENSMUST00000043843.12	3540	7	107	2	0	-2	multi-exon	FALSE	canonical	3	479	junction_6	89.534754270184	1243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTAGGCTTCTTCCTCTT	4563	False	NA	8	True	AATAAA	-19	NA	97690497	97729588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
ENSMUSG00000038366.16_26	chr11	+	3313	6	ISM	ENSMUSG00000038366.16	ENSMUST00000148280.3	686	7	1560	-2643	250	-2	3prime_fragment	FALSE	canonical	3	479	junction_5	97.3829553874804	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTAGGCTTCTTCCTCTT	NA	False	NA	8	True	AATAAA	-19	NA	97697577	97729588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
ENSMUSG00000038366.16_39	chr11	+	2084	1	ISM	ENSMUSG00000038366.16	ENSMUST00000043843.12	3540	7	37114	2	3255	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTAGGCTTCTTCCTCTT	689	False	NA	8	True	AATAAA	-19	NA	97727504	97729588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97727500_97729600
ENSMUSG00000038368.17_0	chr4	+	5792	44	FSM	ENSMUSG00000038368.17	ENSMUST00000097992.10	5791	44	-8	7	-7	-5	multi-exon	TRUE	canonical	0	0	junction_35	26.0666035463672	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTTGTGCAATGTGACTT	NA	False	NA	3	True	AGTAAA	-12	NA	88012858	88329236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318_88096526_88100820_88100909_88104116_88104320_88114995_88115254_88147559_88147665_88148069_88148172_88148688_88148820_88150892_88151020_88192334_88192470_88196445_88196497_88197456_88197541_88215220_88215339_88221681_88221868_88228028_88228151_88244379_88244473_88249205_88249295_88254404_88254450_88257421_88257531_88260439_88260557_88262815_88263055_88267040_88267131_88273604_88273753_88275680_88275801_88277483_88277607_88278063_88278142_88278753_88278826_88286909_88287013_88288991_88289073_88310195_88310325_88311769_88311886_88315211_88315473_88316078_88316169_88319253_88319432_88321547_88321646_88325349_88325602_88327157_88327234_88328853
ENSMUSG00000038368.17_2	chr4	+	5537	43	NIC	ENSMUSG00000038368.17	novel	5791	44	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_34	31.831445611301	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATGTGACTTTTATTTT	NA	False	NA	10	True	AGTAAA	-19	NA	88012862	88329243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318_88096526_88100820_88100909_88104116_88104320_88147559_88147665_88148069_88148172_88148688_88148820_88150892_88151020_88192334_88192470_88196445_88196497_88197456_88197541_88215220_88215339_88221681_88221868_88228028_88228151_88244379_88244473_88249205_88249295_88254404_88254450_88257421_88257531_88260439_88260557_88262815_88263055_88267040_88267131_88273604_88273753_88275680_88275801_88277483_88277607_88278063_88278142_88278753_88278826_88286909_88287013_88288991_88289073_88310195_88310325_88311769_88311886_88315211_88315473_88316078_88316169_88319253_88319432_88321547_88321646_88325349_88325602_88327157_88327234_88328853
ENSMUSG00000038368.17_6	chr4	+	1737	11	ISM	ENSMUSG00000038368.17	ENSMUST00000097992.10	5791	44	-4	213790	-3	14172	5prime_fragment	FALSE	canonical	3	105	junction_5	16.9292646030476	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAACCCTGAATTCAGTAT	NA	False	NA	NA	False	ATTAAA	-14	NA	88012862	88115453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318_88096526_88100820_88100909_88104116_88104320_88114995
ENSMUSG00000038369.15_0	chr2	-	4046	14	NIC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	4	-2	combination_of_known_splicesites	FALSE	canonical	3	120	junction_7	19.2079865046321	167	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAACTTAAAGGTATGTT	NA	False	NA	-25	True	AATAAA	-11	NA	155315722	155232590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155282607_155282706_155315559
ENSMUSG00000038369.15_11	chr2	-	7022	15	NIC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	4	-2	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	44.4323034720994	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAACTTAAAGGTATGTT	NA	False	NA	-25	True	AATAAA	-11	NA	155315722	155232590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155247394_155250371_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155282607_155282706_155315559
ENSMUSG00000038369.15_22	chr2	-	2880	5	ISM	ENSMUSG00000038369.15	ENSMUST00000043126.12	6872	14	33237	15	-3985	-2	3prime_fragment	FALSE	canonical	3	35	junction_4	56.3044181214938	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAACTTAAAGGTATGTT	588	False	NA	-25	True	AATAAA	-11	NA	155249466	155232590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155247394
ENSMUSG00000038369.15_7	chr2	-	1735	6	NIC	ENSMUSG00000038369.15	novel	6872	14	NA	NA	3287	-2	combination_of_known_splicesites	FALSE	canonical	3	145	junction_4	14.7431339951857	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAACTTAAAGGTATGTT	NA	False	NA	-25	True	AATAAA	-11	NA	155257536	155232590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155253444_155253567_155256731
ENSMUSG00000038370.7_1	chr1	-	1537	3	FSM	ENSMUSG00000038370.7	ENSMUST00000111332.2	1577	3	38	2	38	-2	multi-exon	FALSE	canonical	1	2	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGAGTGGTTTGTGTGGGT	NA	False	NA	-1	True	AATAAA	-31	NA	171023799	171000832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171002095_171003138_171003194_171023579
ENSMUSG00000038371.16_0	chr7	-	7069	40	FSM	ENSMUSG00000038371.16	ENSMUST00000164759.8	7090	40	12	9	4	0	multi-exon	FALSE	canonical	3	82	junction_32	14.3447273642903	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGAACCTCTGAGT	NA	False	NA	NA	False	ATTAAA	-11	NA	110214117	109907228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_109908704_109909364_109909497_109911280_109911369_109911882_109912077_109913166_109913272_109914179_109914414_109916102_109916231_109919879_109920007_109928967_109929154_109929816_109929919_109934498_109934676_109939096_109939282_109948061_109948203_109950799_109950997_109961246_109961446_109963731_109963878_109964928_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394_110027600_110038046_110038146_110040156_110040286_110040658_110040773_110041496_110041575_110046220_110046335_110049101_110049211_110051035_110051169_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159554_110213913
ENSMUSG00000038371.16_15	chr7	-	7064	40	NIC	ENSMUSG00000038371.16	novel	7154	41	NA	NA	-3	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_39	19.8558248483317	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGAACCTCTGAGT	NA	False	NA	NA	False	ATTAAA	-11	NA	110214115	109907228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_109908704_109909364_109909497_109911280_109911369_109911882_109912077_109913166_109913272_109914179_109914414_109916102_109916231_109919879_109920007_109928967_109929154_109929816_109929919_109934498_109934676_109939096_109939282_109948061_109948203_109950799_109950997_109961246_109961446_109963731_109963878_109964928_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394_110027600_110038046_110038146_110040156_110040286_110040658_110040773_110041496_110041575_110046220_110046335_110049101_110049211_110051035_110051169_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159551_110213913
ENSMUSG00000038371.16_19	chr7	-	7144	41	FSM	ENSMUSG00000038371.16	ENSMUST00000033058.14	7154	41	10	0	4	0	multi-exon	FALSE	canonical	3	12	junction_13	24.8098266821838	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGAACCTCTGAGT	NA	False	NA	NA	False	ATTAAA	-11	NA	110214117	109907228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_109908704_109909364_109909497_109911280_109911369_109911882_109912077_109913166_109913272_109914179_109914414_109916102_109916231_109919879_109920007_109928967_109929154_109929816_109929919_109934498_109934676_109939096_109939282_109940496_109940572_109948061_109948203_109950799_109950997_109961246_109961446_109963731_109963878_109964928_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394_110027600_110038046_110038146_110040156_110040286_110040658_110040773_110041496_110041575_110046220_110046335_110049101_110049211_110051035_110051169_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159554_110213913
ENSMUSG00000038371.16_31	chr7	-	7166	41	NIC	ENSMUSG00000038371.16	novel	7154	41	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_12	25.4321523863003	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGAACCTCTGAGT	NA	False	NA	NA	False	ATTAAA	-11	NA	110214118	109907228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_109908704_109909364_109909497_109911280_109911369_109911882_109912077_109913166_109913272_109914179_109914414_109916102_109916231_109919879_109920007_109928967_109929154_109929816_109929919_109934498_109934676_109939096_109939282_109947093_109947190_109948061_109948203_109950799_109950997_109961246_109961446_109963731_109963878_109964928_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394_110027600_110038046_110038146_110040156_110040286_110040658_110040773_110041496_110041575_110046220_110046335_110049101_110049211_110051035_110051169_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159554_110213913
ENSMUSG00000038372.15_0	chr13	-	1666	11	FSM	ENSMUSG00000038372.15	ENSMUST00000041859.9	1713	11	39	8	39	-8	multi-exon	FALSE	canonical	3	65	junction_5	9.43186089804128	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACTAACAGAGTTTGCTG	NA	False	NA	-12	True	ATTAAA	-18	NA	32522684	32003569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_32003962_32004124_32004194_32101602_32101700_32124466_32124586_32284339_32284468_32310982_32311088_32311889_32312083_32409117_32409228_32411197_32411286_32418335_32418381_32522364
ENSMUSG00000038374.11_0	chr3	+	706	6	FSM	ENSMUSG00000038374.11	ENSMUST00000048915.11	2608	6	9	1893	2	-2	multi-exon	FALSE	canonical	3	2531	junction_2	745.762804114016	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTATTACTTTACTGT	8644	False	NA	14	True	AATAAA	-18	NA	96537257	96539214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004
ENSMUSG00000038374.11_2	chr3	+	709	6	FSM	ENSMUSG00000038374.11	ENSMUST00000196456.5	2604	6	2	1893	2	-2	multi-exon	FALSE	canonical	3	2213	junction_2	872.428931202995	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTATTACTTTACTGT	8644	False	NA	14	True	AATAAA	-18	NA	96537257	96539214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96537345_96537617_96537678_96537792_96537871_96538181_96538319_96538747_96538885_96539004
ENSMUSG00000038375.16_0	chr2	+	3938	4	FSM	ENSMUSG00000038375.16	ENSMUST00000043237.14	3979	4	30	11	4	-11	multi-exon	FALSE	canonical	3	61	junction_1	13.490737563232	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCACATTATGCTTTCTG	4071	False	NA	-2	True	AATAAA	-10	NA	155223763	155231759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_155223938_155227209_155227385_155227800_155228090_155228459
ENSMUSG00000038375.16_1	chr2	+	3817	4	FSM	ENSMUSG00000038375.16	ENSMUST00000174685.8	740	4	5	-3082	5	-11	multi-exon	FALSE	canonical	3	14	junction_2	32.8261413442938	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCACATTATGCTTTCTG	4072	False	NA	-2	True	AATAAA	-10	NA	155223764	155231759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_155223938_155227209_155227385_155227920_155228090_155228459
ENSMUSG00000038375.16_4	chr2	+	4470	4	NIC	ENSMUSG00000038375.16	novel	991	3	NA	NA	22	-11	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	39.8106630048896	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCACATTATGCTTTCTG	4451	False	NA	-2	True	AATAAA	-10	NA	155224143	155231759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_155224850_155227209_155227385_155227800_155228090_155228459
ENSMUSG00000038375.16_9	chr2	+	2210	1	ISM	ENSMUSG00000038375.16	ENSMUST00000043237.14	3979	4	5816	11	5428	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCACATTATGCTTTCTG	9857	False	NA	-2	True	AATAAA	-10	NA	155229549	155231759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155229500_155231800
ENSMUSG00000038379.16_1	chr9	+	2880	22	FSM	ENSMUSG00000038379.16	ENSMUST00000070326.14	2871	22	-13	4	-13	-4	multi-exon	FALSE	canonical	3	211	junction_10	27.5493373131652	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTGTACAGTGGTCAGT	NA	False	NA	6	True	AATAAA	-17	NA	83716757	83754435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
ENSMUSG00000038379.16_2	chr9	+	2705	21	FSM	ENSMUSG00000038379.16	ENSMUST00000188445.7	2711	21	7	-1	6	1	multi-exon	FALSE	canonical	3	211	junction_10	27.9819584732735	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTCTCGACAACATTC	NA	False	NA	1	True	AATAAA	-16	NA	83716748	83751547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235
ENSMUSG00000038379.16_3	chr9	+	2949	23	NNC	ENSMUSG00000038379.16	novel	2871	22	NA	NA	-4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	74.5741768391691	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTGTACAGTGGTCAGT	NA	False	NA	6	True	AATAAA	-17	NA	83716766	83754435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83726402_83726481_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
ENSMUSG00000038379.16_9	chr9	+	2872	22	NNC	ENSMUSG00000038379.16	novel	2871	22	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_11	54.6264162422717	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTGTACAGTGGTCAGT	NA	False	NA	6	True	AATAAA	-17	NA	83716768	83754435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735136_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
ENSMUSG00000038383.17_1	chr2	-	1605	12	FSM	ENSMUSG00000038383.17	ENSMUST00000077626.13	1636	12	28	3	17	-2	multi-exon	FALSE	canonical	3	155	junction_4	21.4987987363815	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTTGTTCTGATGACA	NA	False	NA	-3	True	AATAAA	-20	NA	155199322	155120165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173068_155173179_155177280_155177344_155178601_155178662_155187567_155187633_155199185
ENSMUSG00000038384.17_0	chr5	+	2489	6	ISM	ENSMUSG00000038384.17	ENSMUST00000056053.9	7362	16	17817	2	-1935	-2	3prime_fragment	TRUE	canonical	0	0	junction_1	2.65329983228432	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123298836	123305471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_123299193_123299813_123299981_123301216_123301349_123301434_123301555_123301633_123301772_123303895
ENSMUSG00000038384.17_4	chr5	+	2491	1	ISM	ENSMUSG00000038384.17	ENSMUST00000163030.9	8857	17	23946	0	2758	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTACGCCGTCTCTCTTGC	1699	False	NA	31	True	TATAAA	-31	NA	123304201	123306692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_123304200_123306700
ENSMUSG00000038384.17_8	chr5	+	2065	5	ISM	ENSMUSG00000038384.17	ENSMUST00000056053.9	7362	16	18860	4	-892	-4	3prime_fragment	FALSE	canonical	0	0	junction_1	2.58602010819715	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123299879	123305469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_123299981_123301216_123301349_123301434_123301555_123301633_123301772_123303895
ENSMUSG00000038387.10_2	chr7	+	963	6	FSM	ENSMUSG00000038387.10	ENSMUST00000044111.10	995	6	26	6	26	-6	multi-exon	FALSE	canonical	3	253	junction_4	17.1860408471527	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTGGAGATGCTTTTT	NA	False	NA	3	True	AATAAA	-11	NA	44667410	44671065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44667593_44669523_44669612_44669726_44669830_44669913_44670023_44670510_44670630_44670703
ENSMUSG00000038388.15_0	chr6	+	1945	13	FSM	ENSMUSG00000038388.15	ENSMUST00000036236.15	2161	13	5	211	5	-48	multi-exon	FALSE	canonical	3	978	junction_6	79.6350617225576	949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAACAAGTCAGCCTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	50087233	50175356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_50087445_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
ENSMUSG00000038388.15_1	chr6	+	1936	13	NIC	ENSMUSG00000038388.15	novel	1896	14	NA	NA	4	-48	combination_of_known_junctions	FALSE	canonical	3	128	junction_1	284.972062470848	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAACAAGTCAGCCTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	50087232	50175356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_50087435_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
ENSMUSG00000038388.15_10	chr6	+	1757	11	NIC	ENSMUSG00000038388.15	novel	2418	12	NA	NA	7	48	combination_of_known_splicesites	FALSE	canonical	3	63	junction_1	329.176563564298	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCAACAAGTCAGCCTTC	NA	False	NA	NA	False	AATAAA	-14	NA	50087235	50175355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_50087445_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
ENSMUSG00000038390.12_1	chr6	-	2557	5	FSM	ENSMUSG00000038390.12	ENSMUST00000046893.10	2676	5	116	3	-89	0	multi-exon	FALSE	canonical	1	2	junction_4	3.56195171219375	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTGATGTTCAGCGTT	NA	False	NA	-3	True	ATTAAA	-18	NA	124840764	124835409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124836184_124836454_124836613_124836985_124837176_124837781_124839086_124840633
ENSMUSG00000038390.12_2	chr6	-	3062	4	NIC	ENSMUSG00000038390.12	novel	2855	6	NA	NA	-16	0	intron_retention	FALSE	canonical	1	2	junction_3	4.08248290463863	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTGATGTTCAGCGTT	NA	False	NA	-3	True	ATTAAA	-18	NA	124840896	124835409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124836184_124836454_124837176_124837781_124839086_124840633
ENSMUSG00000038390.12_3	chr6	-	2116	4	ISM	ENSMUSG00000038390.12	ENSMUST00000046893.10	2676	5	2105	3	1900	0	3prime_fragment	FALSE	canonical	2	6	junction_2	2.62466929133727	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTGATGTTCAGCGTT	1423	False	NA	-3	True	ATTAAA	-18	NA	124838775	124835409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124836184_124836454_124836613_124836985_124837176_124837781
ENSMUSG00000038393.15_18	chr3	+	2167	6	ISM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	1139	0	-399	0	3prime_fragment	FALSE	canonical	3	438	junction_1	30.2549169557611	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAATGTTCTTTTCT	NA	False	NA	19	True	AATAAA	-14	NA	96466414	96469173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ENSMUSG00000038393.15_21	chr3	+	1011	1	ISM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	2888	28	791	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATAAATGTTCTTTT	NA	False	NA	17	True	AATAAA	-12	NA	96468160	96469171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96468200_96469200
ENSMUSG00000038393.15_22	chr3	+	1830	4	ISM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	1742	2	-21	-2	3prime_fragment	FALSE	canonical	3	483	junction_1	17.4610678049451	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATAAATGTTCTTTT	NA	False	NA	17	True	AATAAA	-12	NA	96467017	96469171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96467162_96467253_96467411_96467523_96467676_96467794
ENSMUSG00000038393.15_5	chr3	+	2250	7	ISM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	949	2	-589	-2	3prime_fragment	FALSE	canonical	3	413	junction_1	39.6137602355545	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATAAATGTTCTTTT	NA	False	NA	17	True	AATAAA	-12	NA	96466224	96469171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ENSMUSG00000038393.15_6	chr3	+	2793	8	FSM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	0	2	0	-2	multi-exon	FALSE	canonical	3	228	junction_1	94.3746333956929	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATAAATGTTCTTTT	NA	False	NA	17	True	AATAAA	-12	NA	96465275	96469171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96465802_96466207_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ENSMUSG00000038393.15_7	chr3	+	2796	8	FSM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	3	28	0	-2	multi-exon	FALSE	canonical	3	279	junction_1	78.2390371795021	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATAAATGTTCTTTT	NA	False	NA	17	True	AATAAA	-12	NA	96465275	96469171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ENSMUSG00000038398.9_0	chr8	+	1548	9	FSM	ENSMUSG00000038398.9	ENSMUST00000043767.9	2057	9	33	476	3	-476	multi-exon	FALSE	canonical	3	271	junction_6	38.5873603010105	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAATCAGGTTTTTTGTT	NA	False	NA	6	True	AATAAA	-19	NA	13835647	13848717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13835885_13836146_13836254_13837364_13837472_13841881_13841981_13842099_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
ENSMUSG00000038398.9_4	chr8	+	1478	8	ISM	ENSMUSG00000038398.9	ENSMUST00000043767.9	2057	9	365	476	335	-476	3prime_fragment	FALSE	canonical	3	271	junction_5	39.9571198733271	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAATCAGGTTTTTTGTT	NA	False	NA	6	True	AATAAA	-19	NA	13835979	13848717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_13836254_13837364_13837472_13841881_13841981_13842099_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
ENSMUSG00000038400.16_0	chr2	-	2703	1	ISM	ENSMUSG00000038400.16	ENSMUST00000036248.13	4538	4	49365	8	7554	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGAATTTTCTCCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	173068961	173066258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_173066300_173069000
ENSMUSG00000038400.16_1	chr2	-	2127	4	FSM	ENSMUSG00000038400.16	ENSMUST00000036248.13	4538	4	43	2368	43	1220	multi-exon	FALSE	canonical	3	84	junction_3	9.39266853573691	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAATCTTAGTTTTTTTT	1125	False	NA	-10	True	AATAAA	-10	NA	173118283	173068618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_173070137_173070368_173070420_173076099_173076255_173117880
ENSMUSG00000038406.18_0	chr7	-	4037	11	FSM	ENSMUSG00000038406.18	ENSMUST00000085383.11	4293	11	253	3	21	-3	multi-exon	FALSE	canonical	3	86	junction_10	46.9408137978029	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACAGGCGTAGTGGTGT	5307	False	NA	-9	True	ATTAAA	-14	NA	44665534	44652374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903_44663018_44665503
ENSMUSG00000038406.18_1	chr7	-	4007	10	ISM	ENSMUSG00000038406.18	ENSMUST00000211735.2	4209	11	810	3	-33	-3	3prime_fragment	FALSE	canonical	3	182	junction_5	29.3371209675842	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACAGGCGTAGTGGTGT	7823	False	NA	-9	True	ATTAAA	-14	NA	44663018	44652374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903
ENSMUSG00000038406.18_10	chr7	-	4138	11	FSM	ENSMUSG00000038406.18	ENSMUST00000211735.2	4209	11	68	3	68	-3	multi-exon	FALSE	canonical	0	0	junction_10	69.4230509269075	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACAGGCGTAGTGGTGT	7081	False	NA	-9	True	ATTAAA	-14	NA	44663760	44652374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903_44663018_44663628
ENSMUSG00000038406.18_4	chr7	-	4160	12	NIC	ENSMUSG00000038406.18	novel	4209	11	NA	NA	29	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	81.4000426421802	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACAGGCGTAGTGGTGT	5315	False	NA	-9	True	ATTAAA	-14	NA	44665526	44652374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903_44663018_44663628_44663760_44665503
ENSMUSG00000038406.18_5	chr7	-	2448	5	ISM	ENSMUSG00000038406.18	ENSMUST00000211735.2	4209	11	6503	3	5660	-3	3prime_fragment	FALSE	canonical	3	212	junction_4	19.904459299363	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACAGGCGTAGTGGTGT	7938	False	NA	-9	True	ATTAAA	-14	NA	44657325	44652374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729
ENSMUSG00000038412.9_0	chr9	-	489	4	FSM	ENSMUSG00000038412.9	ENSMUST00000060251.8	2232	4	767	976	17	0	multi-exon	FALSE	canonical	3	2040	junction_3	82.3825763671475	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACACGGTATTGAATATT	NA	False	NA	-26	True	AATAAA	-19	NA	121686661	121678604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121686577
ENSMUSG00000038412.9_1	chr9	-	1970	3	FSM	ENSMUSG00000038412.9	ENSMUST00000215007.2	1980	3	7	3	7	-3	multi-exon	FALSE	canonical	3	2040	junction_2	90	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATATCAGATGTCTTGTT	NA	False	NA	-6	True	ATTAAA	-10	NA	121686671	121677631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_121679389_121681556_121681676_121686577
ENSMUSG00000038412.9_2	chr9	-	490	4	NIC	ENSMUSG00000038412.9	novel	713	6	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	216	junction_3	942.112637757409	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACACGGTATTGAATATT	NA	False	NA	-26	True	AATAAA	-19	NA	121686666	121678604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_121678756_121679253_121679389_121681556_121681672_121686577
ENSMUSG00000038415.11_0	chr13	+	2700	1	FSM	ENSMUSG00000038415.11	ENSMUST00000042118.11	4843	1	2030	113	2030	-113	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTTAATATTATTTGT	NA	False	NA	NA	False	NA	NA	NA	31742146	31744846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_31742100_31744800
ENSMUSG00000038416.16_0	chr8	+	2227	18	FSM	ENSMUSG00000038416.16	ENSMUST00000043962.9	2301	18	20	54	19	-54	multi-exon	FALSE	canonical	3	559	junction_10	60.600055957127	884	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCTTTTTCATTGTGTCT	NA	False	NA	15	True	AATAAA	-17	NA	13807695	13831884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13807855_13808997_13809053_13809139_13809238_13810529_13810569_13810976_13811118_13812850_13813011_13813819_13813912_13814568_13814703_13816417_13816498_13817537_13817588_13818560_13818635_13819376_13819503_13821297_13821451_13823340_13823405_13825707_13825770_13827471_13827608_13829227_13829319_13831371
ENSMUSG00000038417.5_1	chr10	-	3238	23	FSM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	42	2	42	-2	multi-exon	FALSE	canonical	3	326	junction_19	28.6394298502739	827	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGGTTTTGCTTCTGA	NA	False	NA	-27	True	AATAAA	-15	NA	41179214	41064169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_41064696_41096894_41096982_41102917_41103001_41104102_41104299_41106002_41106087_41108102_41108251_41109547_41109607_41116500_41116640_41127712_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
ENSMUSG00000038418.8_0	chr18	+	3356	2	FSM	ENSMUSG00000038418.8	ENSMUST00000064795.6	4484	2	1115	13	-269	-13	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAAGAAACTGTAGC	NA	False	NA	NA	False	ATTAAA	-4	NA	34993990	34998024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_34994840_34995517
ENSMUSG00000038422.3_0	chr4	-	1115	2	FSM	ENSMUSG00000038422.3	ENSMUST00000037820.3	1205	2	25	65	25	-65	multi-exon	FALSE	canonical	3	14	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTTAATCTGAGCATAG	NA	False	NA	NA	False	NA	NA	NA	62420488	62417309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62418331_62420394
ENSMUSG00000038425.19_1	chr18	-	2842	10	FSM	ENSMUSG00000038425.19	ENSMUST00000161542.8	2736	10	-113	7	17	0	multi-exon	FALSE	canonical	3	36	junction_9	94.1501296524877	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTAGGCTCTCACTGTA	NA	False	NA	-19	True	AATAAA	-16	NA	70663322	70641757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70662821
ENSMUSG00000038425.19_16	chr18	-	2412	10	NNC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_9	93.0357690406634	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTAGGCTCTCACTGTA	NA	False	NA	-19	True	AATAAA	-16	NA	70663332	70641757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661896_70663258
ENSMUSG00000038425.19_7	chr18	-	2290	9	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	3	116	junction_8	75.0961883187156	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTAGGCTCTCACTGTA	NA	False	NA	-19	True	AATAAA	-16	NA	70663333	70641757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70663258
ENSMUSG00000038425.19_8	chr18	-	2414	10	FSM	ENSMUSG00000038425.19	ENSMUST00000043286.15	2591	10	173	4	7	-1	multi-exon	FALSE	canonical	3	102	junction_9	76.3322820564839	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACACTAGGCTCTCACTGT	NA	False	NA	-20	True	AATAAA	-15	NA	70663332	70641758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
ENSMUSG00000038429.11_3	chr6	-	3078	20	FSM	ENSMUSG00000038429.11	ENSMUST00000122110.8	3076	20	-3	1	-3	-1	multi-exon	FALSE	canonical	3	759	junction_16	54.5472424788812	1751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGTACGGGGGCTGA	7902	False	NA	-28	True	AATACA	-8	NA	124806401	124792001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
ENSMUSG00000038429.11_8	chr6	-	3028	20	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-4	2	combination_of_known_junctions	FALSE	canonical	3	37	junction_16	192.331489002841	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTACGGGGGCTGACTG	7901	False	NA	-25	True	AATACA	-11	NA	124806402	124791998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801611_124801814_124801949_124802074_124802142_124803261_124803388_124806247
ENSMUSG00000038437.12_16	chr11	+	4541	4	ISM	ENSMUSG00000038437.12	ENSMUST00000107586.3	7206	20	14894	23	2414	-23	3prime_fragment	FALSE	canonical	3	13	junction_1	2.16024689946929	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACTAAAAAAAGAAAATCCAA	NA	False	NA	-8	True	AATAAA	-11	NA	97569291	97576266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97569490_97569790_97569882_97571295_97571653_97572371
ENSMUSG00000038437.12_19	chr11	+	1511	1	ISM	ENSMUSG00000038437.12	ENSMUST00000044730.12	7274	20	20519	20	7881	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAAATCCAAAGA	432	False	NA	-5	True	AATAAA	-14	NA	97574758	97576269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97574800_97576300
ENSMUSG00000038437.12_5	chr11	+	4674	19	ISM	ENSMUSG00000038437.12	ENSMUST00000044730.12	7274	20	1545	2329	-42	603	3prime_fragment	FALSE	canonical	0	0	junction_11	4.97772817435603	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGACAGAAACGTAGTACA	NA	False	NA	NA	False	AATAAA	-22	NA	97555784	97573960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97555861_97556311_97556367_97556555_97556666_97557615_97557720_97557900_97557995_97560249_97560463_97561078_97561178_97563282_97563419_97564285_97564898_97565263_97565446_97565599_97565709_97566964_97567032_97567195_97567339_97567687_97567886_97567973_97568063_97569139_97569490_97569790_97569882_97571295_97571653_97572371
ENSMUSG00000038446.9_0	chr10	-	3327	15	FSM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	202	5	0	-5	multi-exon	FALSE	canonical	3	163	junction_10	18.6027208894236	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCTGCTGAGTTCA	NA	False	NA	-8	True	AATAAA	-14	NA	40759105	40707621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
ENSMUSG00000038446.9_1	chr10	-	3292	16	NNC	ENSMUSG00000038446.9	novel	3534	15	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.2694511980113	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCTGCTGAGTTCA	NA	False	NA	-8	True	AATAAA	-14	NA	40759104	40707621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_40708468_40708501_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
ENSMUSG00000038451.14_1	chr6	+	1166	3	FSM	ENSMUSG00000038451.14	ENSMUST00000143040.8	882	3	-11	-273	-11	-10	multi-exon	FALSE	canonical	3	7	junction_1	13	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTCACAACCTGTTTCAT	NA	False	NA	9	True	AGTAAA	-12	NA	124785836	124787572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124785919_124786189_124786933_124787231
ENSMUSG00000038451.14_3	chr6	+	1216	3	FSM	ENSMUSG00000038451.14	ENSMUST00000052727.5	1219	3	-1	4	-1	-4	multi-exon	FALSE	canonical	3	20	junction_1	6.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTGTTTCATTATTGT	NA	False	NA	15	True	AGTAAA	-18	NA	124785867	124787578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124785994_124786189_124786933_124787231
ENSMUSG00000038453.18_17	chr11	-	712	1	ISM	ENSMUSG00000038453.18	ENSMUST00000238233.2	6624	15	26887	7	26887	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGATCTTCTTCCTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	97400884	97400172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97400200_97400900
ENSMUSG00000038453.18_19	chr11	-	4373	18	NIC	ENSMUSG00000038453.18	novel	4493	19	NA	NA	84	-1	combination_of_known_splicesites	TRUE	canonical	1	1	junction_10	3.08248764860562	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCCCTTCCCCCTTCCTGT	NA	False	NA	NA	False	AATAAA	-18	NA	97465957	97410140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97411000_97413198_97413322_97413915_97414069_97414282_97414438_97416166_97416402_97416833_97417081_97417354_97417503_97417607_97417739_97422629_97422806_97423847_97424039_97424290_97424335_97424577_97424671_97425256_97426120_97426559_97426654_97427133_97427333_97427869_97428066_97442502_97442805_97465793
ENSMUSG00000038456.10_0	chr6	-	4348	19	FSM	ENSMUSG00000038456.10	ENSMUST00000036877.10	4468	19	117	3	117	-3	multi-exon	FALSE	canonical	3	100	junction_17	14.1962653756995	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAACATTCCTAGTGAGTG	NA	False	NA	-10	True	AATAAA	-18	NA	39534684	39439314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589_39500694_39534508
ENSMUSG00000038456.10_12	chr6	-	3716	18	ISM	ENSMUSG00000038456.10	ENSMUST00000036877.10	4468	19	34567	0	-34134	0	3prime_fragment	TRUE	canonical	3	100	junction_17	14.3808792701043	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTCCTAGTGAGTGTAT	NA	False	NA	-7	True	AATAAA	-21	NA	39500234	39439311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589
ENSMUSG00000038456.10_18	chr6	-	4444	20	NIC	ENSMUSG00000038456.10	novel	4468	19	NA	NA	123	-3	combination_of_known_junctions	FALSE	canonical	3	8	junction_18	37.2191235508675	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAACATTCCTAGTGAGTG	NA	False	NA	-10	True	AATAAA	-18	NA	39534678	39439314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589_39500694_39504415_39504518_39534508
ENSMUSG00000038456.10_2	chr6	-	191	1	Genic_Genomic	ENSMUSG00000038456.10	novel	NA	NA	NA	NA	7757	1	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTCCTAGTGAGTGTATA	8076	False	NA	-6	True	AATAAA	-22	NA	39439501	39439310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_39439300_39439500
ENSMUSG00000038456.10_31	chr6	-	4273	15	ISM	ENSMUSG00000038456.10	ENSMUST00000036877.10	4468	19	116	4955	116	871	5prime_fragment	FALSE	canonical	3	100	junction_13	14.3199589555905	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATGATGTGTTTTATT	NA	False	NA	NA	False	CATAAA	-12	NA	39534685	39444266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589_39500694_39534508
ENSMUSG00000038456.10_5	chr6	-	4148	18	NIC	ENSMUSG00000038456.10	novel	4468	19	NA	NA	116	-3	combination_of_known_splicesites	FALSE	canonical	3	24	junction_14	27.1251106227713	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAACATTCCTAGTGAGTG	NA	False	NA	-10	True	AATAAA	-18	NA	39534685	39439314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39483634_39483757_39485175_39485304_39499589_39500694_39534508
ENSMUSG00000038459.11_0	chr7	-	2424	3	FSM	ENSMUSG00000038459.11	ENSMUST00000117085.2	2238	3	-192	6	-192	-6	multi-exon	FALSE	canonical	3	1379	junction_1	80.5	2812	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACGCGTGGGCTTATG	NA	False	NA	-13	True	AATAAA	-12	NA	83801293	83758569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_83760010_83763458_83763639_83800489
ENSMUSG00000038462.4_0	chr13	-	1172	2	FSM	ENSMUSG00000038462.4	ENSMUST00000042834.4	1363	2	46	145	46	-145	multi-exon	FALSE	canonical	3	2063	junction_1	0	1216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGTGTTCTCATCTAAAT	NA	False	NA	-16	True	AATAAA	-18	NA	30729299	30724435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_30725325_30729016
ENSMUSG00000038462.4_1	chr13	-	577	1	ISM	ENSMUSG00000038462.4	ENSMUST00000042834.4	1363	2	4333	145	4333	-145	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGTGTTCTCATCTAAAT	NA	False	NA	-16	True	AATAAA	-18	NA	30725012	30724435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_30724400_30725000
ENSMUSG00000038463.9_0	chr1	+	3112	8	FSM	ENSMUSG00000038463.9	ENSMUST00000046792.9	3095	8	-22	5	-22	-5	multi-exon	FALSE	canonical	0	0	junction_1	0.494871659305394	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTCCCGGCTCATTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	170472078	170510353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_170472665_170475250_170475515_170477304_170477413_170489927_170490105_170494140_170494367_170496319_170496833_170508605_170508783_170509292
ENSMUSG00000038467.16_0	chr2	+	1581	5	FSM	ENSMUSG00000038467.16	ENSMUST00000044277.10	1616	5	24	11	24	-6	multi-exon	FALSE	canonical	3	34	junction_1	13.5738719604982	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTCATATCGCTGTGT	NA	False	NA	19	True	ATTAAA	-11	NA	154498961	154536694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154499292_154531437_154531616_154533129_154533245_154534468_154534596_154535863
ENSMUSG00000038467.16_4	chr2	+	581	1	ISM	ENSMUSG00000038467.16	ENSMUST00000044277.10	1616	5	37184	3	3132	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCGCTGTGTGTTCAGTC	NA	False	NA	27	True	ATTAAA	-19	NA	154536121	154536702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_154536100_154536700
ENSMUSG00000038473.15_5	chr1	-	4978	10	FSM	ENSMUSG00000038473.15	ENSMUST00000160456.8	3022	10	29	-1985	17	1985	multi-exon	FALSE	canonical	0	0	junction_2	1.22726233524303	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTTTCCCATTGTCTC	NA	False	NA	NA	False	AATAAA	-15	NA	170417401	170143042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_170146460_170147990_170148157_170155086_170155267_170156709_170156877_170165681_170165824_170176963_170177073_170202816_170202876_170218299_170218393_170342183_170342256_170416828
ENSMUSG00000038481.14_0	chr10	+	5767	13	FSM	ENSMUSG00000038481.14	ENSMUST00000044672.11	5807	13	29	11	0	-11	multi-exon	FALSE	canonical	3	22	junction_12	6.08447477875727	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGACTTGGTTTCTGCGT	NA	False	NA	-3	True	AATAAA	-5	NA	40225332	40359803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_40225718_40270320_40270397_40310299_40310411_40312067_40312209_40330010_40330069_40342633_40342766_40345574_40345719_40345881_40345952_40351564_40351638_40352152_40352251_40352884_40352964_40353697_40353965_40355670
ENSMUSG00000038481.14_13	chr10	+	3585	1	ISM	ENSMUSG00000038481.14	ENSMUST00000044672.11	5807	13	130924	2	130706	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTCTGCGTGGGTTATTT	6731	False	NA	6	True	AATAAA	-14	NA	40356227	40359812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_40356200_40359800
ENSMUSG00000038481.14_20	chr10	+	4189	2	ISM	ENSMUSG00000038481.14	ENSMUST00000215000.2	5681	12	128562	4	128394	-4	3prime_fragment	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTTTCTGCGTGGGTTAT	4419	False	NA	4	True	AATAAA	-12	NA	40353915	40359810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_40353965_40355670
ENSMUSG00000038481.14_3	chr10	+	5724	12	FSM	ENSMUSG00000038481.14	ENSMUST00000214659.2	3814	12	-193	-1717	-4	0	multi-exon	FALSE	canonical	1	1	junction_4	10.2900095976953	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCGTGGGTTATTTTA	NA	False	NA	8	True	AATAAA	-16	NA	40225328	40359814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_40225718_40270320_40270397_40310299_40310411_40312067_40312209_40342633_40342766_40345574_40345719_40345881_40345952_40351564_40351638_40352152_40352251_40352884_40352964_40353697_40353965_40355670
ENSMUSG00000038481.14_7	chr10	+	5693	12	FSM	ENSMUSG00000038481.14	ENSMUST00000215000.2	5681	12	-13	1	8	-1	multi-exon	FALSE	canonical	2	7	junction_1	9.04899428227586	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGCGTGGGTTATTTT	NA	False	NA	7	True	AATAAA	-15	NA	40225340	40359813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_40225718_40310299_40310411_40312067_40312209_40330010_40330069_40342633_40342766_40345574_40345719_40345881_40345952_40351564_40351638_40352152_40352251_40352884_40352964_40353697_40353965_40355670
ENSMUSG00000038482.12_0	chr8	+	2478	12	FSM	ENSMUSG00000038482.12	ENSMUST00000209885.2	2511	12	26	7	9	-1	multi-exon	FALSE	canonical	3	547	junction_1	150.974903502547	749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAAGCTCTGTGTTTCT	2129	False	NA	87	True	AATAAA	-17	NA	13388776	13428441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ENSMUSG00000038482.12_1	chr8	+	2412	11	FSM	ENSMUSG00000038482.12	ENSMUST00000209396.2	2421	11	9	0	9	0	multi-exon	FALSE	canonical	3	161	junction_2	290.39449030586	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	2129	False	NA	88	True	AATAAA	-18	NA	13388776	13428442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ENSMUSG00000038482.12_17	chr8	+	2488	11	NIC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-11	-5	combination_of_known_junctions	FALSE	canonical	3	161	junction_2	301.20167662216	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTAAACAAGCTCTGTGT	2162	False	NA	83	True	AATAAA	-13	NA	13388809	13428437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_13388921_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ENSMUSG00000038482.12_30	chr8	+	2452	11	FSM	ENSMUSG00000038482.12	ENSMUST00000170909.2	1700	11	-13	-739	0	-1	multi-exon	FALSE	canonical	3	905	junction_5	61.5983766019852	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAAGCTCTGTGTTTCT	3013	False	NA	87	True	AATAAA	-17	NA	13389660	13428441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ENSMUSG00000038482.12_9	chr8	+	2557	12	NIC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	464	junction_1	173.205128471779	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAAGCTCTGTGTTTCT	2164	False	NA	87	True	AATAAA	-17	NA	13388811	13428441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_13388921_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ENSMUSG00000038485.7_0	chr11	+	5787	10	FSM	ENSMUSG00000038485.7	ENSMUST00000238729.2	7131	10	-150	1494	-150	-1494	multi-exon	FALSE	canonical	3	14	junction_4	9.34258800425685	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAGAAAAAAGAAA	NA	False	NA	NA	False	AGTAAA	-11	NA	97253110	97287874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_97254250_97263891_97263957_97267262_97267368_97267822_97267925_97268761_97268893_97269368_97269538_97273725_97273855_97279937_97280074_97280391_97280543_97284214
ENSMUSG00000038485.7_1	chr11	+	2647	9	NIC	ENSMUSG00000038485.7	novel	7131	10	NA	NA	-142	-4524	combination_of_known_splicesites	FALSE	canonical	3	14	junction_3	8.78564169540279	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGAATTGGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	97253118	97284844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_97254250_97263891_97263957_97267262_97267368_97268761_97268893_97269368_97269538_97273725_97273855_97279937_97280074_97280391_97280543_97284214
ENSMUSG00000038485.7_4	chr11	+	660	4	ISM	ENSMUSG00000038485.7	ENSMUST00000045540.4	7015	10	20347	4912	5461	-4912	3prime_fragment	FALSE	canonical	3	29	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTTAGCTTTTAGTATT	NA	False	NA	NA	False	NA	NA	NA	97273723	97284456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97273855_97279937_97280074_97280391_97280543_97284214
ENSMUSG00000038485.7_5	chr11	+	2009	1	ISM	ENSMUSG00000038485.7	ENSMUST00000238729.2	7131	10	32608	1491	17606	-1491	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAGAAAAAA	6120	False	NA	NA	False	AGTAAA	-14	NA	97285868	97287877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97285900_97287900
ENSMUSG00000038486.10_0	chr3	+	4289	13	FSM	ENSMUSG00000038486.10	ENSMUST00000035371.9	4334	13	35	10	35	-7	multi-exon	FALSE	canonical	0	0	junction_2	2.01900690659762	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCCAAAGTGGCTGTGT	1789	False	NA	-6	True	AATAAA	-15	NA	96088501	96102827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96088620_96091954_96092924_96094288_96094470_96095411_96095564_96095640_96095775_96096377_96096468_96096682_96096794_96096966_96097056_96097598_96097764_96097942_96098077_96099729_96099937_96100504_96100665_96101048
ENSMUSG00000038489.9_1	chr7	-	169	1	Genic_Genomic	ENSMUSG00000038489.9	novel	NA	NA	NA	NA	3105	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	8915	False	NA	NA	False	NA	NA	NA	141051940	141051771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_141051800_141051900
ENSMUSG00000038489.9_2	chr7	-	377	2	FSM	ENSMUSG00000038489.9	ENSMUST00000043870.9	1650	2	2	1271	2	-1271	multi-exon	FALSE	canonical	3	1072	junction_1	0	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAGGTCTAACTTCCAAG	8002	False	NA	-32	True	AGTAAA	-18	NA	141055043	141053043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141053318_141054940
ENSMUSG00000038495.15_0	chr3	+	3909	12	NNC	ENSMUSG00000038495.15	novel	8043	12	NA	NA	5	-3974	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	17.0565418486489	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAATTATTTTTGATA	NA	False	NA	NA	False	AATAAA	-12	NA	96011864	96064472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_96012132_96043784_96043936_96047727_96047917_96048932_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
ENSMUSG00000038495.15_1	chr3	+	3893	12	NIC	ENSMUSG00000038495.15	novel	8043	12	NA	NA	-15	-3974	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	20.6325587201114	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAATTATTTTTGATA	NA	False	NA	NA	False	AATAAA	-12	NA	96011823	96064472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_96011941_96043784_96043936_96047727_96047917_96048798_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
ENSMUSG00000038495.15_12	chr3	+	4023	13	NNC	ENSMUSG00000038495.15	novel	8101	13	NA	NA	4	-3974	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.28626204439	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAATTATTTTTGATA	NA	False	NA	NA	False	AATAAA	-12	NA	96011863	96064472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_96012132_96037541_96037655_96043784_96043936_96047727_96047917_96048932_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
ENSMUSG00000038495.15_25	chr3	+	2883	1	ISM	ENSMUSG00000038495.15	ENSMUST00000090785.9	8101	13	51422	2303	5240	-2303	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTGTATCATGTTGTT	NA	False	NA	5	True	TATAAA	-25	NA	96063260	96066143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96063300_96066100
ENSMUSG00000038495.15_4	chr3	+	4180	13	NIC	ENSMUSG00000038495.15	novel	8101	13	NA	NA	2	-3974	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	21.7976808144557	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAATTATTTTTGATA	NA	False	NA	NA	False	AATAAA	-12	NA	96011840	96064472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_96012132_96037541_96037655_96043784_96043936_96047727_96047917_96048798_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
ENSMUSG00000038495.15_5	chr3	+	4049	12	FSM	ENSMUSG00000038495.15	ENSMUST00000035519.12	8043	12	20	3974	1	-3974	multi-exon	FALSE	canonical	3	30	junction_1	14.2242953608394	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAATTATTTTTGATA	NA	False	NA	NA	False	AATAAA	-12	NA	96011858	96064472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96012132_96043784_96043936_96047727_96047917_96048798_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
ENSMUSG00000038496.17_0	chr1	-	2998	7	FSM	ENSMUSG00000038496.17	ENSMUST00000045560.15	2974	7	-25	1	-25	0	multi-exon	FALSE	canonical	1	1	junction_5	3.48409082672781	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATTGGTTATTTCAT	NA	False	NA	NA	False	AATAAA	-12	NA	83016194	82990244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_82991711_82992423_82992566_82997052_82997246_83000054_83000863_83003946_83004102_83005733_83005864_83016090
ENSMUSG00000038496.17_2	chr1	-	2875	6	FSM	ENSMUSG00000038496.17	ENSMUST00000164473.2	1550	6	-49	-1276	-32	0	multi-exon	FALSE	canonical	2	2	junction_5	2.92574776766556	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATTGGTTATTTCAT	NA	False	NA	NA	False	AATAAA	-12	NA	83016201	82990244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_82991711_82992423_82992566_82997052_82997246_83000054_83000863_83003946_83004102_83016090
ENSMUSG00000038497.8_0	chr8	+	2806	13	NNC	ENSMUSG00000038497.8	novel	4335	13	NA	NA	-2	-2	at_least_one_novel_splicesite	TRUE	canonical	3	20	junction_7	12.8344155387856	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTATTAGTTTTAATTT	NA	False	NA	3	True	AATAAA	-15	NA	13338206	13371394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358348_13358467_13360144_13360341_13363805_13363957_13368842_13368923_13369762_13369913_13370760
ENSMUSG00000038497.8_1	chr8	+	2766	5	FSM	ENSMUSG00000038497.8	ENSMUST00000210063.2	2723	5	-43	0	-43	0	multi-exon	FALSE	canonical	3	38	junction_3	9.44391338376205	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13338146	13347617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979
ENSMUSG00000038497.8_4	chr8	+	2723	9	NNC	ENSMUSG00000038497.8	novel	4335	13	NA	NA	-4	7166	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_7	12.8640730330638	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTGTGTAAAGTGCCTGA	NA	False	NA	NA	False	AATAAA	-23	NA	13338185	13361251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358348_13358467_13360144
ENSMUSG00000038497.8_5	chr8	+	2993	9	ISM	ENSMUSG00000038497.8	ENSMUST00000045229.7	4335	13	-298	11679	-277	7160	5prime_fragment	FALSE	canonical	3	15	junction_7	14.0512454963964	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATGTGATTGTGTAAAGT	NA	False	NA	NA	False	AATAAA	-17	NA	13337912	13361245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358345_13358467_13360144
ENSMUSG00000038497.8_6	chr8	+	2808	13	FSM	ENSMUSG00000038497.8	ENSMUST00000045229.7	4335	13	-3	1530	-1	-2	multi-exon	FALSE	canonical	3	15	junction_7	13.4873912311545	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTATTAGTTTTAATTT	NA	False	NA	3	True	AATAAA	-15	NA	13338207	13371394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358345_13358467_13360144_13360341_13363805_13363957_13368842_13368923_13369762_13369913_13370760
ENSMUSG00000038497.8_9	chr8	+	4504	4	ISM	ENSMUSG00000038497.8	ENSMUST00000210063.2	2723	5	-277	-562	-277	530	intron_retention	FALSE	canonical	3	38	junction_3	9.41629792788369	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATTAAATAATACGCTT	NA	False	NA	NA	False	AGTAAA	-3	NA	13337912	13348179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845
ENSMUSG00000038500.16_0	chr17	-	2142	6	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	204	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	36.7205664444327	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36290924	36283432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018_36290148_36290599
ENSMUSG00000038500.16_1	chr17	-	1912	4	FSM	ENSMUSG00000038500.16	ENSMUST00000172429.8	1878	4	-35	1	-35	-1	multi-exon	FALSE	canonical	3	103	junction_2	20.5101600838869	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTCTCTCATTTCTCT	NA	False	NA	-2	True	AATAAA	-15	NA	36289898	36283433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602
ENSMUSG00000038500.16_2	chr17	-	1846	5	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	14	-1	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	22.0056810846654	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTCTCTCATTTCTCT	NA	False	NA	-2	True	AATAAA	-15	NA	36290177	36283433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018
ENSMUSG00000038500.16_4	chr17	-	2405	5	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	208	0	intron_retention	FALSE	canonical	3	33	junction_4	28.9913780286484	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36290920	36283432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36284696_36285414_36285706_36289272_36289674_36290018_36290148_36290599
ENSMUSG00000038500.16_8	chr17	-	1901	4	FSM	ENSMUSG00000038500.16	ENSMUST00000055454.14	2727	4	824	2	36	-2	multi-exon	FALSE	canonical	3	22	junction_3	38.4216374224502	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTATCTTCTCTCATTTCTC	NA	False	NA	-3	True	AATAAA	-14	NA	36290304	36283434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36290018
ENSMUSG00000038502.18_0	chr7	-	1750	12	FSM	ENSMUSG00000038502.18	ENSMUST00000046575.17	1883	12	131	2	131	-1	multi-exon	FALSE	canonical	3	715	junction_7	41.0738097969944	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTGCTGTCCCTCCCTGC	5571	False	NA	-11	True	AATAAA	-12	NA	44519081	44512493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
ENSMUSG00000038502.18_2	chr7	-	1568	13	NIC	ENSMUSG00000038502.18	novel	1883	12	NA	NA	129	-1	combination_of_known_junctions	FALSE	canonical	3	386	junction_1	117.813647577671	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTGCTGTCCCTCCCTGC	5569	False	NA	-11	True	AATAAA	-12	NA	44519083	44512493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44512619_44512802_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
ENSMUSG00000038502.18_25	chr7	-	2217	12	NIC	ENSMUSG00000038502.18	novel	1883	12	NA	NA	131	0	intron_retention	FALSE	canonical	3	386	junction_1	122.965627126224	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGTCCCTCCCTGCT	5571	False	NA	-10	True	AATAAA	-13	NA	44519081	44512492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44512619_44512802_44512869_44512958_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
ENSMUSG00000038502.18_6	chr7	-	2386	11	NIC	ENSMUSG00000038502.18	novel	1883	12	NA	NA	146	0	intron_retention	FALSE	canonical	3	715	junction_6	42.6240542417072	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGTCCCTCCCTGCT	5586	False	NA	-10	True	AATAAA	-13	NA	44519066	44512492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44512869_44512958_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
ENSMUSG00000038503.16_15	chr7	+	1011	1	ISM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	6166	2356	3113	1096	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	20	True	AATAAA	-15	NA	83547373	83548384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_83547400_83548400
ENSMUSG00000038503.16_3	chr7	+	1873	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	263	2356	-67	1096	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	1604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	20	True	AATAAA	-15	NA	83541470	83548384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_83541684_83544737_83544971_83546957
ENSMUSG00000038506.14_0	chr8	-	2740	7	FSM	ENSMUSG00000038506.14	ENSMUST00000045366.10	2748	7	8	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	9.7082439194738	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13337833	13305963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_13307977_13308946_13309044_13311384_13311468_13321589_13321721_13328516_13328686_13330908_13331126_13337803
ENSMUSG00000038506.14_1	chr8	-	2671	6	FSM	ENSMUSG00000038506.14	ENSMUST00000110838.8	2955	6	284	0	-6	0	multi-exon	FALSE	canonical	3	14	junction_2	13.5558105622644	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13337847	13305963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_13307977_13308946_13309044_13321589_13321721_13328516_13328686_13330908_13331126_13337803
ENSMUSG00000038506.14_14	chr8	-	2704	6	ISM	ENSMUSG00000038506.14	ENSMUST00000045366.10	2748	7	6722	0	473	0	3prime_fragment	FALSE	canonical	3	25	junction_2	10.6320270880016	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13331119	13305963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_13307977_13308946_13309044_13311384_13311468_13321589_13321721_13328516_13328686_13330908
ENSMUSG00000038506.14_2	chr8	-	2586	5	NIC	ENSMUSG00000038506.14	novel	2853	5	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	18.8994047525312	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGATGTCCTTTATTCT	NA	False	NA	-2	True	AATAAA	-15	NA	13337866	13305962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_13307977_13321589_13321721_13328516_13328686_13330916_13331126_13337803
ENSMUSG00000038506.14_3	chr8	-	2582	5	FSM	ENSMUSG00000038506.14	ENSMUST00000110840.8	2853	5	270	1	-14	0	multi-exon	FALSE	canonical	3	21	junction_1	12.0701077045733	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13337855	13305963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_13307977_13321589_13321721_13328516_13328686_13330908_13331126_13337803
ENSMUSG00000038506.14_6	chr8	-	2655	6	NIC	ENSMUSG00000038506.14	novel	2729	7	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	17.7831380807775	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13337839	13305963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_13307977_13308946_13309044_13321589_13321721_13328516_13328686_13330916_13331126_13337803
ENSMUSG00000038507.7_0	chr6	-	3416	12	FSM	ENSMUSG00000038507.7	ENSMUST00000038398.7	3231	12	-189	4	-189	-4	multi-exon	FALSE	canonical	3	16	junction_11	5.37671748458954	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATGAAGACTGGAGTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	39095472	39063347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_39064575_39065911_39066064_39067132_39067264_39068238_39068315_39070561_39070659_39073469_39073612_39077182_39077379_39079492_39079617_39082823_39082926_39088444_39088746_39091099_39091236_39094740
ENSMUSG00000038508.8_1	chr8	-	1083	2	FSM	ENSMUSG00000038508.8	ENSMUST00000003808.8	1545	2	461	1	461	0	multi-exon	FALSE	canonical	3	308	junction_1	0	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	1476	False	NA	-7	True	AATAAA	-17	NA	71084284	71082043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71082825_71083982
ENSMUSG00000038508.8_11	chr8	-	1318	3	FSM	ENSMUSG00000038508.8	ENSMUST00000110103.2	1380	3	62	0	62	0	multi-exon	FALSE	canonical	3	72	junction_2	118	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	716	False	NA	-7	True	AATAAA	-17	NA	71085044	71082043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71082825_71083982_71084275_71084799
ENSMUSG00000038508.8_5	chr8	-	1327	3	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_2	115.5	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	674	False	NA	-7	True	AATAAA	-17	NA	71085086	71082043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_71082825_71083982_71084242_71084799
ENSMUSG00000038508.8_6	chr8	-	845	1	NIC	ENSMUSG00000038508.8	novel	1545	2	NA	NA	1857	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	2872	False	NA	-7	True	AATAAA	-17	NA	71082888	71082043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71082000_71082900
ENSMUSG00000038510.13_1	chr10	-	1194	10	FSM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	22	80	-11	-80	multi-exon	FALSE	canonical	3	1057	junction_7	76.0030863570847	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTGAAACTTGTGT	6579	False	NA	-12	True	NA	NA	NA	40123010	40099502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
ENSMUSG00000038510.13_4	chr10	-	992	9	NIC	ENSMUSG00000038510.13	novel	1296	10	NA	NA	-3	20	combination_of_known_splicesites	FALSE	canonical	3	32	junction_7	393.075374451262	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTGTTGCTTATTTG	6587	False	NA	16	True	ACTAAA	-38	NA	40123002	40099658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40120580_40120714_40122948
ENSMUSG00000038515.11_0	chr8	-	1595	8	NIC	ENSMUSG00000038515.11	novel	1408	7	NA	NA	-7	-2	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	134.762678779537	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGCTTCTGTGCTCAT	3663	False	NA	NA	False	NA	NA	NA	13250594	13222023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_13222613_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
ENSMUSG00000038515.11_1	chr8	-	1230	8	FSM	ENSMUSG00000038515.11	ENSMUST00000210317.2	3013	8	16	1767	13	0	multi-exon	FALSE	canonical	3	341	junction_2	30.9812319750826	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTGTTCTCCATTT	3653	False	NA	-28	True	TTTAAA	-11	NA	13250604	13226928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
ENSMUSG00000038517.16_0	chr11	-	3336	10	NIC	ENSMUSG00000038517.16	novel	3288	10	NA	NA	19	1	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	14.4990421139544	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGTGCGCTCAGGCTG	6103	False	NA	-5	True	AATAAA	-14	NA	97042302	97027001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97042199
ENSMUSG00000038517.16_1	chr11	-	1371	1	ISM	ENSMUSG00000038517.16	ENSMUST00000066078.12	3338	9	12166	5	12166	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGTGCGCTCAGGCTG	NA	False	NA	-5	True	AATAAA	-14	NA	97028372	97027001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97027000_97028400
ENSMUSG00000038517.16_10	chr11	-	3331	10	NIC	ENSMUSG00000038517.16	novel	3288	10	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_9	15.1070255914995	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCGCTCAGGCTGTGC	7497	False	NA	-2	True	AATAAA	-17	NA	97040908	97026998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037460_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97040816
ENSMUSG00000038517.16_12	chr11	-	3334	10	NIC	ENSMUSG00000038517.16	novel	3288	10	NA	NA	-23	1	combination_of_known_junctions	FALSE	canonical	2	9	junction_9	17.5499287747842	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGTGCGCTCAGGCTG	6520	False	NA	-5	True	AATAAA	-14	NA	97041885	97027001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97041784
ENSMUSG00000038517.16_14	chr11	-	2653	6	ISM	ENSMUSG00000038517.16	ENSMUST00000107615.8	3333	9	2257	3	2257	1	3prime_fragment	FALSE	canonical	3	24	junction_5	15.3544781741354	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGTGCGCTCAGGCTG	3149	False	NA	-5	True	AATAAA	-14	NA	97038281	97027001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198
ENSMUSG00000038517.16_15	chr11	-	2043	9	NIC	ENSMUSG00000038517.16	novel	2173	11	NA	NA	26	-5	combination_of_known_junctions	FALSE	canonical	3	24	junction_8	13.3603892158874	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTACTGGCTTTGATTCC	6110	False	NA	-15	True	ATTAAA	-10	NA	97042295	97029236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97030161_97030297_97030417_97037125_97037188_97037280_97037460_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97042199
ENSMUSG00000038517.16_16	chr11	-	3316	10	FSM	ENSMUSG00000038517.16	ENSMUST00000118375.8	3288	10	-27	-1	-25	1	multi-exon	FALSE	canonical	3	15	junction_9	16.2343942158479	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGTGCGCTCAGGCTG	7506	False	NA	-5	True	AATAAA	-14	NA	97040899	97027001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97040816
ENSMUSG00000038517.16_19	chr11	-	2021	9	NIC	ENSMUSG00000038517.16	novel	3288	10	NA	NA	49	-1	combination_of_known_junctions	FALSE	canonical	3	24	junction_4	14.945212444124	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGGCTTTGATTCCGACT	6133	False	NA	-11	True	ATTAAA	-14	NA	97042272	97029232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97042199
ENSMUSG00000038517.16_2	chr11	-	3292	10	NIC	ENSMUSG00000038517.16	novel	2391	10	NA	NA	66	1	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	13.1487219488773	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGTGCGCTCAGGCTG	6150	False	NA	-5	True	AATAAA	-14	NA	97042255	97027001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037460_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97042199
ENSMUSG00000038517.16_4	chr11	-	3025	8	ISM	ENSMUSG00000038517.16	ENSMUST00000107615.8	3333	9	599	3	599	1	3prime_fragment	FALSE	canonical	3	24	junction_5	13.4467961437144	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGTGCGCTCAGGCTG	8466	False	NA	-5	True	AATAAA	-14	NA	97039939	97027001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198_97038380_97039454_97039560_97039770
ENSMUSG00000038517.16_5	chr11	-	1578	2	ISM	ENSMUSG00000038517.16	ENSMUST00000107615.8	3333	9	11013	3	11013	1	3prime_fragment	FALSE	canonical	3	37	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGTGCGCTCAGGCTG	NA	False	NA	-5	True	AATAAA	-14	NA	97029525	97027001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97028502_97029447
ENSMUSG00000038517.16_6	chr11	-	2333	3	ISM	ENSMUSG00000038517.16	ENSMUST00000107615.8	3333	9	10122	2	10122	-2	3prime_fragment	FALSE	canonical	3	37	junction_1	4.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGCGCTCAGGCTGT	NA	False	NA	-4	True	AATAAA	-15	NA	97030416	97027000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97028502_97029447_97030161_97030297
ENSMUSG00000038517.16_7	chr11	-	3233	9	FSM	ENSMUSG00000038517.16	ENSMUST00000107615.8	3333	9	97	3	97	1	multi-exon	FALSE	canonical	3	24	junction_5	12.8160056179763	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGTGCGCTCAGGCTG	7964	False	NA	-5	True	AATAAA	-14	NA	97040441	97027001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198_97038380_97039454_97039560_97039770_97039894_97040187
ENSMUSG00000038517.16_8	chr11	-	3474	9	FSM	ENSMUSG00000038517.16	ENSMUST00000066078.12	3338	9	-141	5	-141	1	multi-exon	FALSE	canonical	3	33	junction_5	10.7579912158358	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGTGCGCTCAGGCTG	7726	False	NA	-5	True	AATAAA	-14	NA	97040679	97027001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037460_97038198_97038380_97039454_97039560_97039770_97039894_97040187
ENSMUSG00000038518.16_0	chr13	+	5293	19	NIC	ENSMUSG00000038518.16	novel	5997	18	NA	NA	128	271	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	184.132198886199	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTTGTTTGTTTCATA	8773	False	NA	17	True	AATAAA	-20	NA	44883138	45074742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_44883254_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
ENSMUSG00000038518.16_14	chr13	+	5620	19	NIC	ENSMUSG00000038518.16	novel	5019	19	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	185.168733528485	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACATTTTGTCTGTCTTGT	9950	False	NA	8	True	AATAAA	-10	NA	44884315	45075111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_44884389_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
ENSMUSG00000038518.16_31	chr13	+	5923	18	FSM	ENSMUSG00000038518.16	ENSMUST00000173246.8	5997	18	65	9	-32	-6	multi-exon	FALSE	canonical	3	632	junction_5	80.8182205637225	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACATTTTGTCTGTCTTG	NA	False	NA	7	True	AATAAA	-9	NA	44884811	45075110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
ENSMUSG00000038518.16_6	chr13	+	5274	19	FSM	ENSMUSG00000038518.16	ENSMUST00000173704.8	4135	19	19	-1158	19	271	multi-exon	FALSE	canonical	3	41	junction_1	182.476448674857	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTTGTTTGTTTCATA	9903	False	NA	17	True	AATAAA	-20	NA	44884268	45074742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_44884365_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
ENSMUSG00000038518.16_68	chr13	+	3994	12	ISM	ENSMUSG00000038518.16	ENSMUST00000173246.8	5997	18	171443	8	61931	-5	3prime_fragment	FALSE	canonical	3	687	junction_1	72.7590839519071	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACATTTTGTCTGTCTTGT	NA	False	NA	8	True	AATAAA	-10	NA	45056189	45075111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
ENSMUSG00000038518.16_7	chr13	+	5627	19	FSM	ENSMUSG00000038518.16	ENSMUST00000044608.14	5019	19	31	-639	-5	-6	multi-exon	FALSE	canonical	3	65	junction_1	177.530035712966	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACATTTTGTCTGTCTTG	9964	False	NA	7	True	AATAAA	-9	NA	44884329	45075110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_44884411_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
ENSMUSG00000038518.16_71	chr13	+	3198	11	ISM	ENSMUSG00000038518.16	ENSMUST00000173246.8	5997	18	175214	7	65702	-4	3prime_fragment	FALSE	canonical	3	689	junction_7	67.4611740188384	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATTTTGTCTGTCTTGTG	NA	False	NA	9	True	AATAAA	-11	NA	45059960	45075112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
ENSMUSG00000038518.16_84	chr13	+	1264	1	ISM	ENSMUSG00000038518.16	ENSMUST00000173246.8	5997	18	189102	7	79590	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATTTTGTCTGTCTTGTG	NA	False	NA	9	True	AATAAA	-11	NA	45073848	45075112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_45073800_45075100
ENSMUSG00000038520.16_0	chr7	-	2165	17	FSM	ENSMUSG00000038520.16	ENSMUST00000047085.16	8750	17	175	6410	-5	0	multi-exon	FALSE	canonical	3	189	junction_4	26.4359485360371	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCGCTGGCTGGCATCAG	7878	False	NA	-11	True	AATAAA	-14	NA	44498324	44490456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
ENSMUSG00000038521.18_0	chr6	-	2875	12	FSM	ENSMUSG00000038521.18	ENSMUST00000162443.8	2906	12	29	2	-9	-2	multi-exon	FALSE	canonical	1	3	junction_4	4.09797369803078	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGCTGGTCTGCTTTTT	NA	False	NA	NA	False	AGTAAA	-12	NA	124519289	124507308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124508700_124509499_124509575_124510232_124510362_124510854_124510934_124511316_124511433_124512191_124512346_124513290_124513491_124514319_124514446_124517279_124517458_124517747_124517956_124518291_124518448_124519226
ENSMUSG00000038524.14_0	chr18	-	1607	1	ISM	ENSMUSG00000038524.14	ENSMUST00000165643.2	2918	2	1430	4	1430	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTGGTCATGTGTTCGT	NA	False	NA	-3	True	AATAAA	-15	NA	38092094	38090487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_38090500_38092100
ENSMUSG00000038524.14_1	chr18	-	4251	20	FSM	ENSMUSG00000038524.14	ENSMUST00000043437.14	4270	20	13	6	-4	-6	multi-exon	FALSE	canonical	2	8	junction_13	2.48875587737619	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATGAGTGGTCATGTG	NA	False	NA	-8	True	AATAAA	-10	NA	38102814	38090492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_38092708_38092830_38092887_38094299_38094388_38095625_38095847_38095972_38096091_38096180_38096265_38096345_38096475_38097060_38097223_38097366_38097472_38097843_38097964_38098703_38098800_38098951_38099075_38099493_38099623_38100415_38100480_38100590_38100728_38100812_38100949_38101266_38101335_38101802_38101849_38102407_38102506_38102758
ENSMUSG00000038524.14_2	chr18	-	2246	2	FSM	ENSMUSG00000038524.14	ENSMUST00000165643.2	2918	2	668	4	668	-1	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTGGTCATGTGTTCGT	NA	False	NA	-3	True	AATAAA	-15	NA	38092856	38090487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_38092708_38092830
ENSMUSG00000038524.14_8	chr18	-	2738	19	NIC	ENSMUSG00000038524.14	novel	4270	20	NA	NA	-9	-1685	intron_retention	FALSE	canonical	2	8	junction_12	2.55072006294422	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCAGGGCCTGGGCCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	38102836	38092171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_38092708_38092830_38092887_38094299_38094388_38095625_38095847_38095972_38096091_38096180_38096265_38096345_38096475_38097060_38097472_38097843_38097964_38098703_38098800_38098951_38099075_38099493_38099623_38100415_38100480_38100590_38100728_38100812_38100949_38101266_38101335_38101802_38101849_38102407_38102506_38102758
ENSMUSG00000038524.14_9	chr18	-	2558	20	NIC	ENSMUSG00000038524.14	novel	4270	20	NA	NA	14	-1687	combination_of_known_junctions	FALSE	canonical	2	2	junction_16	3.3601873051605	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGCCAGGGCCTGGGCCT	NA	False	NA	NA	False	AATAAA	-12	NA	38102796	38092173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_38092708_38092830_38092887_38094299_38094388_38095625_38095847_38095972_38096091_38096180_38096265_38096345_38096475_38097060_38097223_38097366_38097472_38097843_38097964_38098703_38098800_38098951_38099075_38099493_38099623_38100415_38100480_38100590_38100728_38100812_38100955_38101266_38101335_38101802_38101849_38102407_38102506_38102758
ENSMUSG00000038525.17_1	chr5	+	1985	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	147	89	9	-3	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATAATTTCTTCCCCCA	NA	False	NA	16	True	AATAAA	-18	NA	21851023	21867603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
ENSMUSG00000038527.10_0	chr6	+	2601	6	FSM	ENSMUSG00000038527.10	ENSMUST00000049124.10	3010	6	16	393	16	-393	multi-exon	TRUE	canonical	2	10	junction_3	3.13687742827162	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTCAGTGATAATAGAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	124470087	124487209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_124470190_124470773_124471003_124482189_124482380_124483850_124483953_124484048_124484124_124485306
ENSMUSG00000038527.10_3	chr6	+	1154	1	ISM	ENSMUSG00000038527.10	ENSMUST00000049124.10	3010	6	16376	1	16376	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATAAATATGGTTGATTC	5922	False	NA	NA	False	NA	NA	NA	124486447	124487601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_124486400_124487600
ENSMUSG00000038533.16_1	chr2	+	6072	11	FSM	ENSMUSG00000038533.16	ENSMUST00000045270.15	6069	11	-15	12	-1	-12	multi-exon	FALSE	canonical	3	422	junction_9	50.3348785634772	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGACTCAAGCTGGACC	5302	False	NA	25	True	AATAAA	-15	NA	154278399	154381264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154278557_154342319_154342464_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373141_154373333_154376803
ENSMUSG00000038533.16_13	chr2	+	5929	10	NIC	ENSMUSG00000038533.16	novel	6069	11	NA	NA	-2	-12	combination_of_known_junctions	TRUE	canonical	3	63	junction_1	140.841474671541	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGACTCAAGCTGGACC	5301	False	NA	25	True	AATAAA	-15	NA	154278398	154381264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_154278557_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373141_154373333_154376803
ENSMUSG00000038533.16_3	chr2	+	6056	11	FSM	ENSMUSG00000038533.16	ENSMUST00000109725.8	6080	11	12	12	-2	-12	multi-exon	FALSE	canonical	3	122	junction_9	126.860553364708	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGACTCAAGCTGGACC	5315	False	NA	25	True	AATAAA	-15	NA	154278412	154381264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154278557_154342319_154342464_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373144_154373333_154376803
ENSMUSG00000038533.16_55	chr2	+	2837	1	ISM	ENSMUSG00000038533.16	ENSMUST00000109725.8	6080	11	100029	10	5471	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGACTCAAGCTGGACCAG	NA	False	NA	27	True	AATAAA	-17	NA	154378429	154381266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_154378400_154381300
ENSMUSG00000038534.20_3	chr11	+	3574	23	FSM	ENSMUSG00000038534.20	ENSMUST00000090020.13	3771	23	195	2	3	-2	multi-exon	FALSE	canonical	3	35	junction_2	33.8534762061397	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCTGTGACCACTCATTG	NA	False	NA	20	True	AATAAA	-16	NA	96941648	96959728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96941780_96943050_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
ENSMUSG00000038534.20_30	chr11	+	1584	6	ISM	ENSMUSG00000038534.20	ENSMUST00000168565.2	3535	24	14959	0	-1104	0	3prime_fragment	FALSE	canonical	3	70	junction_1	34.0141147172758	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	22	True	AATAAA	-18	NA	96956604	96959730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
ENSMUSG00000038534.20_31	chr11	+	1559	5	FSM	ENSMUSG00000038534.20	ENSMUST00000143360.2	920	5	-14	-625	-14	-8	multi-exon	FALSE	canonical	3	78	junction_1	29.0978951128772	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTTGGCCTGTGACCAC	NA	False	NA	14	True	AATAAA	-10	NA	96957694	96959722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
ENSMUSG00000038534.20_33	chr11	+	1349	4	ISM	ENSMUSG00000038534.20	ENSMUST00000143360.2	920	5	328	-630	328	-3	3prime_fragment	FALSE	canonical	3	130	junction_3	12.5521135891752	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCCTGTGACCACTCATT	NA	False	NA	19	True	AATAAA	-15	NA	96958036	96959727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96958176_96958259_96958387_96958490_96958614_96958767
ENSMUSG00000038535.18_0	chr9	+	4456	23	NNC	ENSMUSG00000038535.18	novel	4387	22	NA	NA	28	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	18.2417761386937	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATATTCAGATTCCTG	NA	False	NA	8	True	AATAAA	-17	NA	72182224	72271047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_72182312_72199063_72199209_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72258806_72258853_72267567_72267624_72269215
ENSMUSG00000038535.18_2	chr9	+	4292	21	FSM	ENSMUSG00000038535.18	ENSMUST00000183410.8	4200	21	-84	-8	5	8	multi-exon	FALSE	canonical	3	22	junction_19	12.0883208097734	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCAGATTCCTGTTTG	NA	False	NA	12	True	AATAAA	-21	NA	72182201	72271051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72267567_72267624_72269215
ENSMUSG00000038535.18_34	chr9	+	1624	1	ISM	ENSMUSG00000038535.18	ENSMUST00000098576.10	4387	22	87266	9	1943	7	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATTCAGATTCCTGTTT	NA	False	NA	11	True	AATAAA	-20	NA	72269426	72271050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_72269400_72271000
ENSMUSG00000038535.18_9	chr9	+	4336	22	FSM	ENSMUSG00000038535.18	ENSMUST00000098576.10	4387	22	44	7	8	-7	multi-exon	FALSE	canonical	3	36	junction_20	11.1161666503221	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTCAGATTCCTGTTTGG	NA	False	NA	13	True	AATAAA	-22	NA	72182204	72271052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72258806_72258853_72267567_72267624_72269215
ENSMUSG00000038538.18_0	chr6	+	4520	18	NIC	ENSMUSG00000038538.18	novel	14644	17	NA	NA	-13	-4	combination_of_known_junctions	FALSE	canonical	3	25	junction_14	13.1069595079581	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	14	True	NA	NA	NA	38410871	38479510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_38411534_38417389_38417483_38429804_38429907_38438409_38438548_38439897_38440002_38440488_38440979_38447086_38447158_38455998_38456129_38458738_38458858_38459437_38459552_38460053_38460198_38461009_38461061_38464042_38464086_38466188_38466240_38467318_38468867_38475622_38475855_38476121_38476212_38479172
ENSMUSG00000038538.18_1	chr6	+	4538	18	NIC	ENSMUSG00000038538.18	novel	4243	17	NA	NA	-25	-4	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	15.2512975226558	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	14	True	NA	NA	NA	38410859	38479510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_38411534_38417389_38417483_38429804_38429907_38438409_38438548_38439897_38440002_38440488_38440985_38447086_38447158_38455998_38456129_38458738_38458858_38459437_38459552_38460053_38460198_38461009_38461061_38464042_38464086_38466188_38466240_38467318_38468867_38475622_38475855_38476121_38476212_38479172
ENSMUSG00000038538.18_15	chr6	+	3255	13	NIC	ENSMUSG00000038538.18	novel	14644	17	NA	NA	-21	-4	combination_of_known_junctions	FALSE	canonical	3	25	junction_9	14.9823970786461	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	6295	False	NA	14	True	NA	NA	NA	38440654	38479510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_38440979_38447086_38447158_38455998_38456129_38458738_38458858_38459437_38459552_38460053_38460198_38461009_38461061_38464042_38464086_38466188_38466240_38467318_38468867_38475622_38475855_38476121_38476212_38479172
ENSMUSG00000038538.18_19	chr6	+	2012	4	ISM	ENSMUSG00000038538.18	ENSMUST00000159925.2	5521	5	6487	4	-424	-4	3prime_fragment	FALSE	canonical	3	57	junction_3	9.89949493661167	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	14	True	NA	NA	NA	38467514	38479510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_38468867_38475622_38475855_38476121_38476212_38479172
ENSMUSG00000038538.18_21	chr6	+	3833	1	ISM	ENSMUSG00000038538.18	ENSMUST00000160583.8	14644	17	74241	740	17187	-740	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATAAAAGGGGGTGATG	NA	False	NA	NA	False	AGTAAA	-20	NA	38485125	38488958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_38485100_38489000
ENSMUSG00000038538.18_3	chr6	+	4478	17	FSM	ENSMUSG00000038538.18	ENSMUST00000160583.8	14644	17	-22	10188	-22	-4	multi-exon	FALSE	canonical	3	23	junction_13	12.8900094550004	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	14	True	NA	NA	NA	38410862	38479510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_38411534_38417389_38417483_38429804_38429907_38438409_38438548_38439897_38440002_38440488_38440979_38447086_38447158_38455998_38456129_38458738_38458858_38459437_38459552_38460053_38460198_38461009_38461061_38464042_38464086_38467318_38468867_38475622_38475855_38476121_38476212_38479172
ENSMUSG00000038538.18_5	chr6	+	6536	16	NIC	ENSMUSG00000038538.18	novel	5752	15	NA	NA	-25	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	12.2300177159861	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAATATTGTTTACTTTT	NA	False	NA	NA	False	NA	NA	NA	38410859	38501758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_38411534_38417389_38417483_38429804_38429907_38438409_38438548_38439897_38440002_38440488_38440979_38447086_38447158_38455998_38456129_38458738_38458858_38459437_38459552_38460053_38460198_38461009_38461061_38464042_38464086_38466188_38466240_38467318_38468867_38499094
ENSMUSG00000038538.18_7	chr6	+	4475	17	FSM	ENSMUSG00000038538.18	ENSMUST00000039127.15	4243	17	-236	4	-13	-4	multi-exon	FALSE	canonical	3	12	junction_6	15.3047174100014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	14	True	NA	NA	NA	38410871	38479510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_38411534_38417389_38417483_38429804_38429907_38438409_38438548_38439897_38440002_38440488_38440985_38447086_38447158_38455998_38456129_38458738_38458858_38459437_38459552_38460053_38460198_38461009_38461061_38464042_38464086_38467318_38468867_38475622_38475855_38476121_38476212_38479172
ENSMUSG00000038539.16_0	chr7	-	697	1	ISM	ENSMUSG00000038539.16	ENSMUST00000047356.11	1816	3	3705	1	2705	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTGTCTTATCTTTG	NA	False	NA	-1	True	AATAAA	-18	NA	44462377	44461680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44461700_44462400
ENSMUSG00000038539.16_1	chr7	-	1756	3	FSM	ENSMUSG00000038539.16	ENSMUST00000047356.11	1816	3	59	1	-25	0	multi-exon	FALSE	canonical	3	52	junction_1	35.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTGTCTTATCTTTG	9745	False	NA	-1	True	AATAAA	-18	NA	44466023	44461680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44462945_44464412_44464707_44465825
ENSMUSG00000038539.16_2	chr7	-	1310	2	ISM	ENSMUSG00000038539.16	ENSMUST00000107893.9	1735	3	624	0	624	0	3prime_fragment	FALSE	canonical	3	52	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTGTCTTATCTTTG	9555	False	NA	-1	True	AATAAA	-18	NA	44464458	44461680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44462945_44464412
ENSMUSG00000038542.15_2	chr8	-	2226	14	NNC	ENSMUSG00000038542.15	novel	2860	14	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	84.1979915149282	434	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCATTTGTGTTTTGTC	NA	False	NA	-7	True	AATAAA	-16	NA	13154825	13127189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145876_13147604_13147669_13148562_13148637_13150324_13150415_13154774
ENSMUSG00000038543.14_0	chr3	-	746	6	FSM	ENSMUSG00000038543.14	ENSMUST00000036360.13	752	6	0	6	0	-6	multi-exon	FALSE	canonical	2	9	junction_2	8.93532316147547	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATTAATTTTGCCTAC	NA	False	NA	NA	False	NA	NA	NA	95799267	95791275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95791550_95792281_95792381_95795452_95795609_95796168_95796228_95797034_95797122_95799196
ENSMUSG00000038543.14_2	chr3	-	735	6	FSM	ENSMUSG00000038543.14	ENSMUST00000090476.10	809	6	52	22	2	-18	multi-exon	FALSE	canonical	3	27	junction_2	2.22710574513201	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAAAATTAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	95799265	95791287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95791550_95792281_95792384_95795452_95795609_95796168_95796228_95797034_95797122_95799196
ENSMUSG00000038543.14_3	chr3	-	183	1	ISM	ENSMUSG00000038543.14	ENSMUST00000090476.10	809	6	7846	23	7771	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAGAAAAAAATTAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	95791471	95791288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95791300_95791500
ENSMUSG00000038543.14_4	chr3	-	537	4	FSM	ENSMUSG00000038543.14	ENSMUST00000145949.8	551	4	12	2	-9	-2	multi-exon	FALSE	canonical	3	30	junction_1	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCGAGGGGAAGAAAGGG	NA	False	NA	NA	False	NA	NA	NA	95799251	95795272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95795609_95796168_95796228_95797034_95797122_95799196
ENSMUSG00000038544.15_0	chr4	-	3102	4	FSM	ENSMUSG00000038544.15	ENSMUST00000107526.8	1438	4	-35	-1629	-5	-31	multi-exon	FALSE	canonical	3	138	junction_3	91.8416511659546	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAATAAACAAACAAACA	-5	True	NA	NA	False	NA	NA	NA	59783843	59769667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59783727
ENSMUSG00000038544.15_1	chr4	-	3182	5	FSM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	24	31	-4	-31	multi-exon	FALSE	canonical	3	236	junction_4	41.7814252988095	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAATAAACAAACAAACA	-4	True	NA	NA	False	NA	NA	NA	59783842	59769667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59782253_59782335_59783727
ENSMUSG00000038544.15_11	chr4	-	1515	3	FSM	ENSMUSG00000038544.15	ENSMUST00000128548.2	1654	3	-4	143	-4	-143	multi-exon	FALSE	canonical	3	236	junction_2	17	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATTGGTTATTCAGTTT	-4	True	NA	-4	True	NA	NA	NA	59783842	59774230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_59775550_59782253_59782335_59783727
ENSMUSG00000038544.15_2	chr4	-	1660	1	ISM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	12542	28	12484	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	59771324	59769664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_59769700_59771300
ENSMUSG00000038545.14_0	chr17	+	5243	26	FSM	ENSMUSG00000038545.14	ENSMUST00000043464.14	5530	26	281	6	46	-6	multi-exon	TRUE	canonical	3	53	junction_11	16.0216853046114	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTATGACCTGTATGGGA	NA	False	NA	13	True	AATAAA	-14	NA	46961543	46975284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46961642_46962362_46962945_46963385_46963538_46963650_46964125_46964675_46964815_46964911_46965109_46965359_46965586_46966440_46966679_46966769_46966876_46967919_46968148_46968369_46968461_46968557_46968730_46968853_46968960_46969247_46969344_46969533_46969710_46969987_46970122_46970392_46970576_46970788_46970896_46970984_46971168_46972219_46972381_46972561_46972779_46972850_46973158_46973983_46974130_46974247_46974375_46974463_46974670_46974893
ENSMUSG00000038545.14_10	chr17	+	4241	23	ISM	ENSMUSG00000038545.14	ENSMUST00000043464.14	5530	26	2558	6	2	-6	3prime_fragment	FALSE	canonical	3	53	junction_8	16.1765185397265	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTATGACCTGTATGGGA	NA	False	NA	13	True	AATAAA	-14	NA	46963820	46975284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46964125_46964675_46964815_46964911_46965109_46965359_46965586_46966440_46966679_46966769_46966876_46967919_46968148_46968369_46968461_46968557_46968730_46968853_46968960_46969247_46969344_46969533_46969710_46969987_46970122_46970392_46970576_46970788_46970896_46970984_46971168_46972219_46972381_46972561_46972779_46972850_46973158_46973983_46974130_46974247_46974375_46974463_46974670_46974893
ENSMUSG00000038545.14_14	chr17	+	3717	21	ISM	ENSMUSG00000038545.14	ENSMUST00000043464.14	5530	26	3730	6	1174	-6	3prime_fragment	FALSE	canonical	3	53	junction_6	16.0533485603471	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTATGACCTGTATGGGA	NA	False	NA	13	True	AATAAA	-14	NA	46964992	46975284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46965109_46965359_46965586_46966440_46966679_46966769_46966876_46967919_46968148_46968369_46968461_46968557_46968730_46968853_46968960_46969247_46969344_46969533_46969710_46969987_46970122_46970392_46970576_46970788_46970896_46970984_46971168_46972219_46972381_46972561_46972779_46972850_46973158_46973983_46974130_46974247_46974375_46974463_46974670_46974893
ENSMUSG00000038545.14_17	chr17	+	2973	17	ISM	ENSMUSG00000038545.14	ENSMUST00000145567.8	5016	25	5634	1	4164	-1	3prime_fragment	FALSE	canonical	3	53	junction_2	17.3489012620396	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACCTGTATGGGACTGCT	NA	False	NA	18	True	AATAAA	-19	NA	46967982	46975289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46968148_46968369_46968461_46968557_46968730_46968853_46968960_46969247_46969344_46969533_46969710_46969987_46970122_46970392_46970576_46970788_46970896_46970984_46971168_46972219_46972381_46972561_46972779_46972850_46973158_46973983_46974130_46974247_46974375_46974463_46974670_46974893
ENSMUSG00000038545.14_18	chr17	+	2629	15	ISM	ENSMUSG00000038545.14	ENSMUST00000145567.8	5016	25	6292	6	-4072	-6	3prime_fragment	FALSE	canonical	3	59	junction_1	16.4608378788405	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTATGACCTGTATGGGA	NA	False	NA	13	True	AATAAA	-14	NA	46968640	46975284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46968730_46968853_46968960_46969247_46969344_46969533_46969710_46969987_46970122_46970392_46970576_46970788_46970896_46970984_46971168_46972219_46972381_46972561_46972779_46972850_46973158_46973983_46974130_46974247_46974375_46974463_46974670_46974893
ENSMUSG00000038545.14_22	chr17	+	2154	11	ISM	ENSMUSG00000038545.14	ENSMUST00000133393.8	4047	21	6178	5	-2716	-5	3prime_fragment	FALSE	canonical	3	60	junction_4	16.1629205281719	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATGACCTGTATGGGAC	NA	False	NA	14	True	AATAAA	-15	NA	46969996	46975285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46970122_46970392_46970576_46970788_46970896_46970984_46971168_46972219_46972381_46972561_46972779_46972850_46973158_46973983_46974130_46974247_46974375_46974463_46974670_46974893
ENSMUSG00000038545.14_9	chr17	+	5040	25	ISM	ENSMUSG00000038545.14	ENSMUST00000043464.14	5530	26	1209	2	123	-2	3prime_fragment	FALSE	canonical	3	53	junction_10	16.1546346978885	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGACCTGTATGGGACTGC	NA	False	NA	17	True	AATAAA	-18	NA	46962471	46975288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46962945_46963385_46963538_46963650_46964125_46964675_46964815_46964911_46965109_46965359_46965586_46966440_46966679_46966769_46966876_46967919_46968148_46968369_46968461_46968557_46968730_46968853_46968960_46969247_46969344_46969533_46969710_46969987_46970122_46970392_46970576_46970788_46970896_46970984_46971168_46972219_46972381_46972561_46972779_46972850_46973158_46973983_46974130_46974247_46974375_46974463_46974670_46974893
ENSMUSG00000038546.10_1	chr13	-	3367	14	FSM	ENSMUSG00000038546.10	ENSMUST00000144326.4	3371	14	-7	11	-7	-11	multi-exon	FALSE	canonical	3	178	junction_12	22.7983182188833	409	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCTACAGATATTAGTGT	NA	False	NA	-12	True	ATTAAA	-40	NA	43634765	43556161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_43557166_43560087_43560200_43565886_43566039_43567458_43567581_43569800_43569946_43573051_43573243_43574686_43574796_43576026_43576140_43578505_43578691_43583923_43583947_43588289_43588458_43589565_43589619_43615187_43615300_43633887
ENSMUSG00000038550.11_0	chr3	-	1400	6	FSM	ENSMUSG00000038550.11	ENSMUST00000036418.10	1398	6	-1	-1	-1	-1	multi-exon	FALSE	canonical	3	105	junction_5	32.3604697122894	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATGCTTTTTTTTTTTTT	NA	False	NA	-2	True	ATTAAA	-14	NA	95789544	95785815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789466
ENSMUSG00000038550.11_1	chr3	-	1069	6	NIC	ENSMUSG00000038550.11	novel	1398	6	NA	NA	-9	-2	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	70.7615714918769	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAAATGCTTTTTTTTTT	NA	False	NA	-5	True	ATTAAA	-11	NA	95789526	95785818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788592_95789466
ENSMUSG00000038550.11_2	chr3	-	1404	6	NIC	ENSMUSG00000038550.11	novel	1398	6	NA	NA	38	-1	combination_of_known_junctions	FALSE	canonical	3	53	junction_5	52.0292225580971	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATGCTTTTTTTTTTTTT	NA	False	NA	-2	True	ATTAAA	-14	NA	95789348	95785815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789266
ENSMUSG00000038550.11_5	chr3	-	1783	5	FSM	ENSMUSG00000038550.11	ENSMUST00000159739.8	1939	5	155	1	24	-1	multi-exon	FALSE	canonical	3	167	junction_2	14.8723737177358	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATGCTTTTTTTTTTTTT	NA	False	NA	-2	True	ATTAAA	-14	NA	95789362	95785815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492
ENSMUSG00000038552.15_1	chr5	-	1674	7	FSM	ENSMUSG00000038552.15	ENSMUST00000172435.8	2333	7	16	643	16	1	multi-exon	FALSE	canonical	3	9	junction_5	5.32290647422377	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGGTTCCTGTATG	NA	False	NA	NA	False	AATAAA	-18	NA	31453264	31450228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31450831_31451029_31451158_31451447_31451538_31451973_31452179_31452349_31452466_31452556_31452702_31452876
ENSMUSG00000038552.15_3	chr5	-	1423	8	FSM	ENSMUSG00000038552.15	ENSMUST00000041266.11	1375	8	-48	0	17	0	multi-exon	FALSE	canonical	2	3	junction_1	7.19977323905952	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTGACTGGTTCCTGTAT	NA	False	NA	NA	False	AATAAA	-17	NA	31453263	31450229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31450509_31450757_31450831_31451029_31451158_31451447_31451538_31451973_31452179_31452349_31452466_31452556_31452702_31452876
ENSMUSG00000038555.8_1	chr18	+	1863	8	FSM	ENSMUSG00000038555.8	ENSMUST00000043484.8	1926	8	60	3	60	-3	multi-exon	FALSE	canonical	2	3	junction_2	2.56347977784662	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGATCTCTGCGTT	NA	False	NA	13	True	AATAAA	-19	NA	34973701	34980513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_34973841_34975506_34975580_34975909_34975987_34978304_34978426_34978627_34978742_34978997_34979146_34979241_34979373_34979453
ENSMUSG00000038560.8_0	chr11	+	3594	2	FSM	ENSMUSG00000038560.8	ENSMUST00000107622.2	3621	2	28	-1	28	1	multi-exon	FALSE	canonical	3	16	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACACTCTCGCTTTGTT	NA	False	NA	1	True	AATAAA	-11	NA	96909586	96915558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96909854_96912231
ENSMUSG00000038560.8_1	chr11	+	2675	1	ISM	ENSMUSG00000038560.8	ENSMUST00000047997.8	3546	2	8664	2	3325	1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACACTCTCGCTTTGTT	NA	False	NA	1	True	AATAAA	-11	NA	96912883	96915558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96912900_96915600
ENSMUSG00000038563.15_0	chr7	+	3588	20	FSM	ENSMUSG00000038563.15	ENSMUST00000179489.8	3608	20	-5	25	-5	-25	multi-exon	FALSE	canonical	3	42	junction_1	25.8006420500325	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGCATCAGAGAACATAA	NA	False	NA	13	True	AATAAA	-18	NA	82297816	82427035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
ENSMUSG00000038563.15_15	chr7	+	3551	19	ISM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	881	25	389	-25	3prime_fragment	FALSE	canonical	3	73	junction_8	20.7522124359706	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGCATCAGAGAACATAA	NA	False	NA	13	True	AATAAA	-18	NA	82298729	82427035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
ENSMUSG00000038563.15_2	chr7	+	3589	20	FSM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	-4	25	-4	-25	multi-exon	FALSE	canonical	3	73	junction_1	22.1664566531058	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGCATCAGAGAACATAA	NA	False	NA	13	True	AATAAA	-18	NA	82297844	82427035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
ENSMUSG00000038563.15_24	chr7	+	2942	14	ISM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	25801	25	4213	-25	3prime_fragment	FALSE	canonical	3	73	junction_3	17.0852370613869	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGCATCAGAGAACATAA	NA	False	NA	13	True	AATAAA	-18	NA	82323649	82427035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
ENSMUSG00000038563.15_8	chr7	+	2472	15	ISM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	-4	79170	-4	-2	5prime_fragment	FALSE	canonical	3	73	junction_1	23.371555186524	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAGCTACTGGTTTGCC	NA	False	NA	NA	False	AATAAA	-13	NA	82297844	82347890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086
ENSMUSG00000038564.12_0	chr5	-	5394	48	FSM	ENSMUSG00000038564.12	ENSMUST00000041565.11	5403	48	5	4	5	-1	multi-exon	TRUE	canonical	3	41	junction_37	14.3941162971073	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGCTGCATTCTTTGC	NA	False	NA	-3	True	ATTAAA	-16	NA	31448446	31410624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31410769_31410896_31410989_31411158_31411313_31411562_31411662_31411745_31411806_31411996_31412093_31412594_31412715_31412908_31413020_31413898_31414016_31414232_31414320_31414674_31414739_31414860_31414971_31415157_31415257_31417737_31417868_31417966_31418077_31418270_31418452_31418782_31418848_31419174_31419269_31420263_31420407_31420709_31420827_31420914_31421051_31421121_31421220_31421750_31421841_31422661_31422807_31422986_31423108_31423258_31423338_31423518_31423768_31423978_31424057_31424577_31424671_31424938_31425024_31428983_31429092_31429330_31429468_31433195_31433364_31434212_31434326_31437762_31437849_31438009_31438114_31438305_31438360_31438687_31438850_31439899_31439996_31440376_31440501_31441347_31441563_31442595_31442684_31442802_31442883_31443106_31443173_31443421_31443462_31443920_31444034_31444237_31444382_31448317
ENSMUSG00000038567.6_0	chr2	-	2042	5	ISM	ENSMUSG00000038567.6	ENSMUST00000038824.6	3560	12	9013	249	9013	-249	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGTCAGATCTCATTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	170330052	170324876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_170326263_170327587_170327708_170327806_170328005_170328690_170328770_170329793
ENSMUSG00000038569.14_10	chr5	-	3081	10	ISM	ENSMUSG00000038569.14	ENSMUST00000049009.7	1631	11	67	7	54	-7	intron_retention	FALSE	canonical	3	7	junction_9	5.0868991743376	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTTCATTTTGTGGTCA	9989	False	NA	NA	False	AATAAA	-10	NA	122492229	122463577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606
ENSMUSG00000038569.14_12	chr5	-	1581	11	FSM	ENSMUSG00000038569.14	ENSMUST00000049009.7	1631	11	50	0	37	0	multi-exon	FALSE	canonical	3	7	junction_9	5.37494186015067	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGGTCATTTTATA	9972	False	NA	NA	False	AATAAA	-17	NA	122492246	122463570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606_122490678_122492201
ENSMUSG00000038569.14_2	chr5	-	4826	11	NIC	ENSMUSG00000038569.14	novel	2371	13	NA	NA	18	-167	intron_retention	FALSE	canonical	3	7	junction_10	5.24976189936268	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAATAGTGATTTTTTT	9953	False	NA	NA	False	AATAAA	-16	NA	122492265	122461452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_122463528_122463943_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606
ENSMUSG00000038569.14_3	chr5	-	2338	13	NIC	ENSMUSG00000038569.14	novel	2371	13	NA	NA	16	-7	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	5.40768486096921	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAAATATGAGTGCTTAC	9951	False	NA	NA	False	ATTAAA	-40	NA	122492267	122461292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_122462288_122463413_122463528_122463943_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606_122490678_122492201
ENSMUSG00000038569.14_4	chr5	-	3304	12	NIC	ENSMUSG00000038569.14	novel	2371	13	NA	NA	16	-167	intron_retention	FALSE	canonical	3	7	junction_10	5.41653422173318	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAATAGTGATTTTTTT	9951	False	NA	NA	False	AATAAA	-16	NA	122492267	122461452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_122463528_122463943_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606_122490678_122492201
ENSMUSG00000038570.16_0	chr7	-	378	2	FSM	ENSMUSG00000038570.16	ENSMUST00000126478.2	430	2	52	0	20	0	multi-exon	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCTTTTGTACCTATCC	NA	False	NA	0	True	AATAAA	-27	NA	82297684	82295375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_82295669_82297599
ENSMUSG00000038572.8_0	chr2	+	1614	15	FSM	ENSMUSG00000038572.8	ENSMUST00000045959.8	1637	15	21	2	21	-2	multi-exon	FALSE	canonical	3	25	junction_6	7.50951777032701	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGTCTGAGTTTGC	NA	False	NA	3	True	AATAAA	-13	NA	154065682	154082820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154065814_154066857_154067075_154069010_154069116_154069982_154070115_154070773_154070859_154070950_154071015_154071386_154071473_154072092_154072276_154074753_154074808_154075108_154075259_154076410_154076479_154076607_154076654_154078677_154078742_154080747_154080828_154082671
ENSMUSG00000038572.8_2	chr2	+	1993	14	NIC	ENSMUSG00000038572.8	novel	1637	15	NA	NA	14	-2	intron_retention	FALSE	canonical	3	26	junction_3	7.18314924918692	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGTCTGAGTTTGC	NA	False	NA	3	True	AATAAA	-13	NA	154065675	154082820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_154065814_154066857_154067075_154069010_154069116_154069982_154070115_154070773_154070859_154070950_154071473_154072092_154072276_154074753_154074808_154075108_154075259_154076410_154076479_154076607_154076654_154078677_154078742_154080747_154080828_154082671
ENSMUSG00000038576.16_0	chr1	+	3043	9	FSM	ENSMUSG00000038576.16	ENSMUST00000153348.8	1898	9	196	-1341	-187	-18	multi-exon	FALSE	canonical	3	16	junction_5	5.55512151082224	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTAAAAAAGAAAACG	NA	False	NA	NA	False	NA	NA	NA	182591772	182724138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_182591962_182592570_182592754_182660627_182660841_182681521_182681696_182685986_182686176_182714904_182715097_182716332_182716478_182719447_182719831_182722763
ENSMUSG00000038576.16_1	chr1	+	3050	9	NNC	ENSMUSG00000038576.16	novel	1898	9	NA	NA	-188	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	9.91762950507832	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTAAAAAAGAAAACG	NA	False	NA	NA	False	NA	NA	NA	182591771	182724138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_182591962_182592570_182592754_182660627_182660841_182681521_182681696_182685986_182686176_182714898_182715097_182716332_182716478_182719447_182719831_182722763
ENSMUSG00000038576.16_15	chr1	+	1150	1	ISM	ENSMUSG00000038576.16	ENSMUST00000085724.5	2983	8	130529	18	130529	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTAAAAAAGAAAACG	NA	False	NA	NA	False	NA	NA	NA	182722988	182724138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_182723000_182724100
ENSMUSG00000038576.16_5	chr1	+	3049	9	NNC	ENSMUSG00000038576.16	novel	1898	9	NA	NA	-189	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	12.2576506721313	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTAAAAAAGAAAACG	NA	False	NA	NA	False	NA	NA	NA	182591770	182724138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_182591962_182592570_182592754_182660627_182660841_182681521_182681696_182685986_182686176_182714898_182715097_182716332_182716478_182719447_182719831_182722765
ENSMUSG00000038578.16_1	chr4	-	3500	17	FSM	ENSMUSG00000038578.16	ENSMUST00000040166.14	3295	17	263	-468	263	468	multi-exon	FALSE	canonical	3	51	junction_3	14.4566971936885	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATTTTAAAAAAACAGACAG	15	True	NA	NA	False	NA	NA	NA	59438370	59314214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
ENSMUSG00000038578.16_2	chr4	-	3390	16	NIC	ENSMUSG00000038578.16	novel	3295	17	NA	NA	249	458	combination_of_known_splicesites	FALSE	canonical	3	11	junction_15	21.7220829776725	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAATATTTTAAAA	1	True	NA	NA	False	NA	NA	NA	59438384	59314224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59438205
ENSMUSG00000038578.16_26	chr4	-	2404	14	ISM	ENSMUSG00000038578.16	ENSMUST00000040166.14	3295	17	277	14533	277	-6	5prime_fragment	FALSE	canonical	3	63	junction_6	11.6248051456597	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAATGATTTGCATT	29	True	NA	NA	False	NA	NA	NA	59438356	59329215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
ENSMUSG00000038578.16_30	chr4	-	2101	12	NIC	ENSMUSG00000038578.16	novel	3295	17	NA	NA	277	-6	combination_of_known_splicesites	FALSE	canonical	3	9	junction_4	23.5308835222744	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAATGATTTGCATT	29	True	NA	NA	False	NA	NA	NA	59438356	59329215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
ENSMUSG00000038578.16_6	chr4	-	3171	15	NIC	ENSMUSG00000038578.16	novel	3295	17	NA	NA	282	461	combination_of_known_splicesites	FALSE	canonical	3	9	junction_7	22.6805679661094	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATATTTTAAAAAAA	34	True	NA	NA	False	NA	NA	NA	59438351	59314221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
ENSMUSG00000038582.16_1	chr5	+	4592	6	FSM	ENSMUSG00000038582.16	ENSMUST00000053426.15	4644	6	24	28	24	-28	multi-exon	FALSE	canonical	3	149	junction_2	9.11262859991561	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTTAATAAATATAGTAT	-16	True	NA	-4	True	AATAAA	-9	NA	122422451	122462316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122422973_122446193_122446374_122451657_122451857_122455173_122455298_122457776_122457907_122458878
ENSMUSG00000038582.16_12	chr5	+	3016	1	ISM	ENSMUSG00000038582.16	ENSMUST00000053426.15	4644	6	36879	22	25472	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATATAGTATTTATAC	NA	False	NA	2	True	AATAAA	-15	NA	122459306	122462322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_122459300_122462300
ENSMUSG00000038587.11_28	chr10	+	6208	4	FSM	ENSMUSG00000038587.11	ENSMUST00000045730.7	6195	4	-17	4	-17	-4	multi-exon	FALSE	canonical	3	1052	junction_2	280.358104335628	1403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATTCACTGTTTTTTTA	NA	False	NA	19	True	AATAAA	-15	NA	4216362	4309466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_4216669_4263742_4263858_4303141_4307940_4308477
ENSMUSG00000038587.11_50	chr10	+	5951	3	FSM	ENSMUSG00000038587.11	ENSMUST00000239373.2	5956	3	1	4	1	-4	multi-exon	FALSE	canonical	3	114	junction_1	774.5	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATTCACTGTTTTTTTA	NA	False	NA	19	True	AATAAA	-15	NA	4284545	4309466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_4284710_4303141_4307940_4308477
ENSMUSG00000038587.11_51	chr10	+	3794	2	ISM	ENSMUSG00000038587.11	ENSMUST00000215696.2	5931	3	7367	4	7367	-4	3prime_fragment	FALSE	canonical	3	1663	junction_1	0	1273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATTCACTGTTTTTTTA	NA	False	NA	19	True	AATAAA	-15	NA	4305134	4309466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_4307940_4308477
ENSMUSG00000038593.19_0	chr5	-	177	1	ISM	ENSMUSG00000038593.19	ENSMUST00000111738.8	5717	14	26436	0	13654	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGATGGCCT	NA	False	NA	NA	False	NA	NA	NA	122376087	122375910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_122375900_122376100
ENSMUSG00000038593.19_10	chr5	-	2624	8	NIC	ENSMUSG00000038593.19	novel	2201	13	NA	NA	17	1184	intron_retention	FALSE	canonical	2	16	junction_2	4.80221037542046	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGACACAGATCCTTTT	NA	False	NA	NA	False	NA	NA	NA	122402461	122385318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_122387047_122388509_122388531_122389674_122389785_122392546_122392647_122395532_122395685_122396897_122397029_122399469_122399591_122402200
ENSMUSG00000038593.19_2	chr5	-	703	1	ISM	ENSMUSG00000038593.19	ENSMUST00000111738.8	5717	14	24263	1647	11481	-1647	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTAAGTTCATTTGA	NA	False	NA	-1	True	AATAAA	-16	NA	122378260	122377557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_122377600_122378300
ENSMUSG00000038593.19_3	chr5	-	2010	14	FSM	ENSMUSG00000038593.19	ENSMUST00000111738.8	5717	14	33	3674	-12	-235	multi-exon	FALSE	non_canonical	0	0	junction_4	9.03379584978658	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGCTGGGCTGTGGTGT	NA	False	NA	-1	True	TTTAAA	-16	NA	122402490	122379584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_122379899_122380668_122380789_122383563_122383727_122384547_122384689_122385594_122385681_122385982_122386109_122386911_122387047_122388509_122388531_122389674_122389785_122392546_122392647_122395532_122395685_122396897_122397029_122399469_122399591_122402200
ENSMUSG00000038594.10_0	chr10	-	2056	1	ISM	ENSMUSG00000038594.10	ENSMUST00000220443.2	7425	13	104441	8	4642	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAATAATTGCTTTCAT	NA	False	NA	NA	False	AATAAA	-7	NA	53151602	53149546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_53149500_53151600
ENSMUSG00000038594.10_1	chr10	-	7344	13	FSM	ENSMUSG00000038594.10	ENSMUST00000220443.2	7425	13	73	8	73	-8	multi-exon	FALSE	canonical	2	8	junction_7	3.73794358200097	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAATAATTGCTTTCAT	NA	False	NA	NA	False	AATAAA	-7	NA	53255970	53149546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_53154341_53157444_53157677_53159932_53160041_53167859_53167911_53168353_53168472_53172309_53172465_53174148_53174302_53177597_53177778_53188603_53188722_53195693_53195816_53224567_53225356_53234144_53234304_53255604
ENSMUSG00000038594.10_10	chr10	-	5326	6	ISM	ENSMUSG00000038594.10	ENSMUST00000220376.2	2339	12	53587	-4588	-16088	-8	3prime_fragment	FALSE	canonical	2	10	junction_5	3.00665927567458	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAATAATTGCTTTCAT	NA	False	NA	NA	False	AATAAA	-7	NA	53172332	53149546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_53154341_53157444_53157677_53159932_53160041_53167859_53167911_53168353_53168472_53172309
ENSMUSG00000038594.10_2	chr10	-	4999	2	ISM	ENSMUSG00000038594.10	ENSMUST00000220376.2	2339	12	68272	-4590	-1403	-6	3prime_fragment	FALSE	canonical	3	14	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAATTGCTTTCATGG	NA	False	NA	NA	False	AATAAA	-9	NA	53157647	53149544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_53154341_53157444
ENSMUSG00000038594.10_3	chr10	-	6249	11	ISM	ENSMUSG00000038594.10	ENSMUST00000220376.2	2339	12	1134	-4588	1134	-8	3prime_fragment	FALSE	canonical	2	8	junction_7	3.82230297072328	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAATAATTGCTTTCAT	NA	False	NA	NA	False	AATAAA	-7	NA	53224785	53149546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_53154341_53157444_53157677_53159932_53160041_53167859_53167911_53168353_53168472_53172309_53172465_53174148_53174302_53177597_53177778_53188603_53188722_53195693_53195816_53224567
ENSMUSG00000038598.10_1	chr4	-	2571	4	ISM	ENSMUSG00000038598.10	ENSMUST00000122832.2	2338	10	23244	-17	23244	17	3prime_fragment	FALSE	canonical	3	17	junction_1	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAATAAACAGAAGAA	NA	False	NA	NA	False	AATAAA	-29	NA	59087869	59081114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_59082492_59084250_59084346_59085233_59085343_59086879
ENSMUSG00000038598.10_10	chr4	-	2767	1	Genic_Genomic	ENSMUSG00000038598.10	novel	NA	NA	NA	NA	29629	2414	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGGTCTGTGGTGAC	NA	False	NA	-7	True	NA	NA	NA	59081484	59078717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_-_59078700_59081500
ENSMUSG00000038598.10_6	chr4	-	2647	12	NNC	ENSMUSG00000038598.10	novel	4664	28	NA	NA	-6766	43	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	5.11681719253465	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGGGTCTTCAAATATCT	NA	False	NA	NA	False	AATAAA	-15	NA	59117879	59081088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_59082492_59084250_59084346_59085233_59085343_59086879_59086982_59092350_59092502_59093848_59093934_59094129_59094284_59099251_59099431_59109585_59109668_59111092_59111205_59113897_59113978_59117784
ENSMUSG00000038600.13_3	chr6	-	3237	21	ISM	ENSMUSG00000038600.13	ENSMUST00000114908.5	3307	22	12489	2	125	-2	3prime_fragment	FALSE	canonical	2	4	junction_15	2.50199920063936	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTTTAAGATGTCGTTAT	NA	False	NA	NA	False	NA	NA	NA	38073995	38025419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38026019_38027400_38027573_38028378_38028497_38029944_38030053_38031489_38031592_38035659_38035877_38037904_38038024_38044671_38044766_38048783_38048942_38051056_38051197_38053620_38053772_38055680_38055894_38058965_38059060_38059854_38059938_38062903_38063031_38064864_38064960_38065547_38065674_38069335_38069431_38069694_38069774_38070872_38071007_38073782
ENSMUSG00000038600.13_4	chr6	-	2851	22	NIC	ENSMUSG00000038600.13	novel	3307	22	NA	NA	128	-2	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	2.77582697938851	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTTTAAGATGTCGTTAT	NA	False	NA	NA	False	NA	NA	NA	38073992	38025419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_38025534_38025916_38026019_38027400_38027573_38028378_38028497_38029944_38030053_38031489_38031592_38035659_38035877_38037904_38038024_38044671_38044766_38048783_38048942_38051056_38051197_38053620_38053772_38055680_38055894_38058965_38059060_38059854_38059938_38062903_38063031_38064864_38064960_38065547_38065674_38069335_38069431_38069694_38069774_38070872_38071007_38073782
ENSMUSG00000038600.13_5	chr6	-	2781	16	ISM	ENSMUSG00000038600.13	ENSMUST00000114908.5	3307	22	12476	9612	112	-6814	internal_fragment	FALSE	canonical	2	4	junction_10	2.71947707391615	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGCAAACTTTAGGAT	NA	False	NA	NA	False	AATAAA	-11	NA	38074008	38035029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38035877_38037904_38038024_38044671_38044766_38048783_38048942_38051056_38051197_38053620_38053772_38055680_38055894_38058965_38059060_38059854_38059938_38062903_38063031_38064864_38064960_38065547_38065674_38069335_38069431_38069694_38069774_38070872_38071007_38073782
ENSMUSG00000038604.10_0	chr8	+	4072	22	FSM	ENSMUSG00000038604.10	ENSMUST00000043531.10	4108	22	11	25	11	-25	multi-exon	FALSE	canonical	3	65	junction_11	11.8587682955494	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAATAAAAGAAAAAAAA	2653	False	NA	-18	True	NA	NA	NA	106331897	106348826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106331983_106341030_106341158_106341272_106341426_106341574_106341654_106342059_106342084_106342175_106342230_106342344_106342498_106342610_106342675_106342759_106342804_106342889_106343016_106343509_106343659_106343733_106343864_106343947_106345358_106345445_106345568_106346419_106346553_106346810_106346947_106347046_106347209_106347481_106347641_106347745_106347943_106348025_106348110_106348202_106348294_106348436
ENSMUSG00000038604.10_18	chr8	+	2187	10	ISM	ENSMUSG00000038604.10	ENSMUST00000043531.10	4108	22	12760	23	12760	-23	3prime_fragment	FALSE	canonical	3	76	junction_1	11.216169985151	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAGAAAAAAAAGC	NA	False	NA	-16	True	NA	NA	NA	106344646	106348828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106345358_106345445_106345568_106346419_106346553_106346810_106346947_106347046_106347209_106347481_106347641_106347745_106347943_106348025_106348110_106348202_106348294_106348436
ENSMUSG00000038604.10_8	chr8	+	3959	21	NIC	ENSMUSG00000038604.10	novel	4108	22	NA	NA	-1	-23	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	20.6815739246316	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAGAAAAAAAAGC	2641	False	NA	-16	True	NA	NA	NA	106331885	106348828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106331983_106341272_106341426_106341574_106341654_106342059_106342084_106342175_106342230_106342344_106342498_106342610_106342675_106342759_106342804_106342889_106343016_106343509_106343659_106343733_106343864_106343947_106345358_106345445_106345568_106346419_106346553_106346810_106346947_106347046_106347209_106347481_106347641_106347745_106347943_106348025_106348110_106348202_106348294_106348436
ENSMUSG00000038605.12_0	chr2	-	2128	5	FSM	ENSMUSG00000038605.12	ENSMUST00000060173.9	2164	5	33	3	19	0	multi-exon	FALSE	canonical	3	33	junction_4	9.60143218483576	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTCAGTGTTGGGTC	1062	False	NA	-5	True	AATAAA	-11	NA	181240972	181237013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181238399_181238539_181238681_181238964_181239137_181239220_181239403_181240724
ENSMUSG00000038605.12_1	chr2	-	3773	2	ISM	ENSMUSG00000038605.12	ENSMUST00000183836.2	2131	5	64	0	64	0	intron_retention	FALSE	canonical	3	47	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTCAGTGTTGGGTC	1107	False	NA	-5	True	AATAAA	-11	NA	181240927	181237013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181238399_181238539
ENSMUSG00000038605.12_2	chr2	-	516	1	ISM	ENSMUSG00000038605.12	ENSMUST00000060173.9	2164	5	3476	3	1870	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTCAGTGTTGGGTC	4505	False	NA	-5	True	AATAAA	-11	NA	181237529	181237013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181237000_181237500
ENSMUSG00000038605.12_4	chr2	-	1877	4	ISM	ENSMUSG00000038605.12	ENSMUST00000183836.2	2131	5	1592	0	0	0	3prime_fragment	FALSE	canonical	3	47	junction_1	5.71547606649408	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTCAGTGTTGGGTC	2635	False	NA	-5	True	AATAAA	-11	NA	181239399	181237013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181238399_181238539_181238681_181238964_181239137_181239220
ENSMUSG00000038605.12_5	chr2	-	2117	5	FSM	ENSMUSG00000038605.12	ENSMUST00000183836.2	2131	5	14	0	14	0	multi-exon	FALSE	canonical	3	8	junction_4	19.6850196850295	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTCAGTGTTGGGTC	1057	False	NA	-5	True	AATAAA	-11	NA	181240977	181237013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181238399_181238539_181238681_181238964_181239137_181239220_181239387_181240724
ENSMUSG00000038605.12_7	chr2	-	3699	3	NIC	ENSMUSG00000038605.12	novel	2131	5	NA	NA	54	0	intron_retention	FALSE	canonical	3	47	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTCAGTGTTGGGTC	1097	False	NA	-5	True	AATAAA	-11	NA	181240937	181237013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181238399_181238539_181239137_181239220
ENSMUSG00000038607.13_0	chr4	+	1045	3	FSM	ENSMUSG00000038607.13	ENSMUST00000041160.13	1192	3	128	19	128	-19	multi-exon	FALSE	canonical	3	257	junction_2	16.5	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATTTTCCATGACAGCAG	4	True	NA	16	True	AATAAA	-16	NA	59035215	59041884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_59035319_59039226_59039359_59041074
ENSMUSG00000038611.18_12	chr7	+	5411	18	NIC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_14	49.6786907872893	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTTTTCTATGGACTG	NA	False	NA	76	True	NA	NA	NA	140808699	140842655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840827_140841028_140841125_140841456_140841688_140841818_140842321
ENSMUSG00000038611.18_3	chr7	+	5291	18	NIC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_15	49.6653158513657	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTTTTCTATGGACTG	NA	False	NA	76	True	NA	NA	NA	140808699	140842655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841200_140841456_140841688_140841818_140842321
ENSMUSG00000038611.18_4	chr7	+	5367	18	NNC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_2	49.8347442062644	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTTTTCTATGGACTG	NA	False	NA	76	True	NA	NA	NA	140808695	140842655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_140808805_140811139_140811256_140812334_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841125_140841456_140841688_140841818_140842321
ENSMUSG00000038611.18_6	chr7	+	5368	18	FSM	ENSMUSG00000038611.18	ENSMUST00000106027.9	5248	18	-4	-116	1	0	multi-exon	FALSE	canonical	3	178	junction_2	28.6346754247049	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTTTTCTATGGACTG	NA	False	NA	76	True	NA	NA	NA	140808697	140842655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841125_140841456_140841688_140841818_140842321
ENSMUSG00000038611.18_67	chr7	+	2687	5	ISM	ENSMUSG00000038611.18	ENSMUST00000122143.8	4864	13	15470	-147	-221	0	3prime_fragment	FALSE	canonical	3	188	junction_1	45.7083143421413	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTTTTCTATGGACTG	3301	False	NA	76	True	NA	NA	NA	140838881	140842655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140840621_140840872_140841028_140841125_140841456_140841688_140841818_140842321
ENSMUSG00000038612.17_0	chr3	+	3447	3	FSM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	-31	2	-31	-2	multi-exon	FALSE	canonical	3	754	junction_2	15.5	1447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAGTAAGGTGTGGTATG	6386	False	NA	12	True	AATAAA	-12	NA	95566067	95570485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95566799_95567071_95567320_95568017
ENSMUSG00000038612.17_1	chr3	+	2203	1	ISM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	2185	1	2116	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	187	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTAAGGTGTGGTATGG	8602	False	NA	13	True	AATAAA	-13	NA	95568283	95570486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95568300_95570500
ENSMUSG00000038612.17_10	chr3	+	2706	2	ISM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	972	13	903	-13	3prime_fragment	FALSE	canonical	3	754	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTTTCCCCCCAAAGTAA	7389	False	NA	1	True	AATAAA	-1	NA	95567070	95570474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95567320_95568017
ENSMUSG00000038612.17_2	chr3	+	4153	2	ISM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	-39	2	-39	-2	intron_retention	FALSE	canonical	3	785	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAGTAAGGTGTGGTATG	6378	False	NA	12	True	AATAAA	-12	NA	95566059	95570485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95566799_95567071
ENSMUSG00000038615.18_10	chr11	-	4597	5	FSM	ENSMUSG00000038615.18	ENSMUST00000081775.12	4654	5	28	29	15	-12	multi-exon	FALSE	canonical	3	711	junction_4	320.112870719064	1672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAATGGATGATTCAG	NA	False	NA	-35	True	AATAAA	-4	NA	96720766	96708268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720644
ENSMUSG00000038615.18_11	chr11	-	1993	1	ISM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	4578	29	3290	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	290	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAATGGATGATTCAG	3155	False	NA	-35	True	AATAAA	-4	NA	96710261	96708268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_96708300_96710300
ENSMUSG00000038615.18_13	chr11	-	3883	4	NNC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	17	-12	intron_retention	FALSE	canonical	3	150	junction_3	570.471345078397	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAATGGATGATTCAG	NA	False	NA	-35	True	AATAAA	-4	NA	96714817	96708268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96714383
ENSMUSG00000038615.18_15	chr11	-	3392	3	ISM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	1751	29	463	-12	3prime_fragment	FALSE	canonical	3	1322	junction_1	36.5	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAATGGATGATTCAG	328	False	NA	-35	True	AATAAA	-4	NA	96713088	96708268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_96711343_96712076_96712236_96712929
ENSMUSG00000038615.18_22	chr11	-	4556	5	FSM	ENSMUSG00000038615.18	ENSMUST00000167149.8	4596	5	11	29	10	-12	multi-exon	FALSE	canonical	3	79	junction_4	530.254891538023	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAATGGATGATTCAG	NA	False	NA	-35	True	AATAAA	-4	NA	96720317	96708268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720236
ENSMUSG00000038615.18_5	chr11	-	4064	4	FSM	ENSMUSG00000038615.18	ENSMUST00000107658.8	4219	4	143	12	-93	-12	multi-exon	FALSE	canonical	3	730	junction_3	297.772844071898	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAATGGATGATTCAG	NA	False	NA	-35	True	AATAAA	-4	NA	96718638	96708268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023
ENSMUSG00000038615.18_8	chr11	-	3512	4	FSM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	6	29	1	-12	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAATGGATGATTCAG	NA	False	NA	-35	True	AATAAA	-4	NA	96714833	96708268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
ENSMUSG00000038618.13_1	chr7	+	1503	6	FSM	ENSMUSG00000038618.13	ENSMUST00000046890.12	1525	6	22	0	7	0	multi-exon	FALSE	canonical	3	288	junction_1	23.1395764870492	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795794	140798571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
ENSMUSG00000038618.13_12	chr7	+	1575	5	FSM	ENSMUSG00000038618.13	ENSMUST00000209500.2	1560	5	-12	-3	7	0	multi-exon	FALSE	canonical	3	288	junction_1	22.576259654779	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795794	140798571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140798082_140798182
ENSMUSG00000038618.13_2	chr7	+	1479	6	NIC	ENSMUSG00000038618.13	novel	1525	6	NA	NA	1	-1	combination_of_known_junctions	TRUE	canonical	3	14	junction_2	127.53258407168	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCAGTGTGTCCTGAGGT	NA	False	NA	19	True	AATAAA	-16	NA	140795788	140798570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140795854_140796633_140796765_140796941_140797626_140797798_140797931_140798002_140798082_140798182
ENSMUSG00000038618.13_25	chr7	+	1510	6	NIC	ENSMUSG00000038618.13	novel	661	3	NA	NA	-10	-1	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	122.763186664407	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCAGTGTGTCCTGAGGT	NA	False	NA	19	True	AATAAA	-16	NA	140796105	140798570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140796173_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
ENSMUSG00000038618.13_6	chr7	+	2218	5	ISM	ENSMUSG00000038618.13	ENSMUST00000046890.12	1525	6	87	0	-15	0	3prime_fragment	FALSE	canonical	3	329	junction_4	8.98262211161084	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795859	140798571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
ENSMUSG00000038619.13_0	chr3	+	2244	3	FSM	ENSMUSG00000038619.13	ENSMUST00000037983.6	3845	3	-15	1616	-6	-1616	multi-exon	FALSE	canonical	3	422	junction_2	58	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTTTCTTCATCTCCGAT	394	False	NA	15	True	NA	NA	NA	95532315	95537797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95532488_95534059_95534186_95535851
ENSMUSG00000038619.13_1	chr3	+	1139	4	FSM	ENSMUSG00000038619.13	ENSMUST00000058230.13	1130	4	-9	0	-9	0	multi-exon	FALSE	canonical	3	58	junction_3	204.491781959298	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAACTAGACCT	391	False	NA	10	True	AATAAA	-21	NA	95532312	95539413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95532488_95534059_95534186_95535851_95536019_95538742
ENSMUSG00000038619.13_6	chr3	+	1527	1	ISM	ENSMUSG00000038619.13	ENSMUST00000037983.6	3845	3	3946	1610	3940	-1610	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATCTCCGATCTTCTC	4355	False	NA	21	True	NA	NA	NA	95536276	95537803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95536300_95537800
ENSMUSG00000038622.9_0	chr15	+	846	4	FSM	ENSMUSG00000038622.9	ENSMUST00000037115.9	1007	4	1	160	1	-160	multi-exon	FALSE	canonical	3	604	junction_2	11.2644968324772	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATACAAATAAAAATT	NA	False	NA	-10	True	AATAAA	-3	NA	52575838	52593800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_52576083_52582741_52582901_52584419_52584525_52593462
ENSMUSG00000038622.9_4	chr15	+	4955	3	ISM	ENSMUSG00000038622.9	ENSMUST00000037115.9	1007	4	2572	139	2572	-139	3prime_fragment	FALSE	canonical	3	604	junction_1	13	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTACCAGCTTACTTG	NA	False	NA	11	True	AATAAA	-24	NA	52578409	52593821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_52582901_52584419_52584525_52593462
ENSMUSG00000038623.10_1	chr7	+	2127	10	FSM	ENSMUSG00000038623.10	ENSMUST00000041890.8	2226	10	91	8	-26	-8	multi-exon	FALSE	canonical	3	11	junction_7	3.33703498170693	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAGATAAACTTTATTAA	NA	False	NA	NA	False	AATAAA	-17	NA	81508839	81533811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_81509289_81512897_81513002_81514994_81515093_81518388_81518493_81520444_81520528_81521116_81521239_81523479_81523585_81525471_81525565_81525722_81525843_81532962
ENSMUSG00000038623.10_6	chr7	+	1478	7	ISM	ENSMUSG00000038623.10	ENSMUST00000119543.2	1066	10	5952	-644	-1094	-8	3prime_fragment	FALSE	canonical	3	11	junction_4	3.07769755210323	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAGATAAACTTTATTAA	NA	False	NA	NA	False	AATAAA	-17	NA	81518386	81533811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_81518493_81520444_81520528_81521116_81521239_81523479_81523585_81525471_81525565_81525722_81525843_81532962
ENSMUSG00000038623.10_9	chr7	+	2031	9	NIC	ENSMUSG00000038623.10	novel	2226	10	NA	NA	-42	-16	combination_of_known_splicesites	TRUE	canonical	0	0	junction_3	6.75925291729789	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTGTTTATGAAGATAAAC	NA	False	NA	NA	False	AATAAA	-9	NA	81508823	81533803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_81509289_81512897_81513002_81514994_81515093_81520444_81520528_81521116_81521239_81523479_81523585_81525471_81525565_81525722_81525843_81532962
ENSMUSG00000038628.9_0	chr2	+	1668	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	92	1188	69	-1188	multi-exon	FALSE	canonical	3	712	junction_2	38.5	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCCAAGCTCTGGCCTC	8988	False	NA	-4	True	ATTAAA	-9	NA	181506221	181511435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181506363_181507738_181507827_181509996
ENSMUSG00000038628.9_3	chr2	+	904	1	ISM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	4409	1181	4386	-1181	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTCTGGCCTCAGTTCTT	3834	False	NA	3	True	ATTAAA	-16	NA	181510538	181511442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_181510500_181511400
ENSMUSG00000038630.9_0	chr4	+	7100	6	FSM	ENSMUSG00000038630.9	ENSMUST00000107554.2	2794	6	-44	-4262	-44	4262	multi-exon	FALSE	canonical	0	0	junction_3	1.01980390271856	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATACCTCTTGCTTTGG	-23	True	NA	NA	False	NA	NA	NA	58943583	58962617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_58943659_58945999_58946530_58948849_58948948_58951827_58951955_58952331_58952443_58956458
ENSMUSG00000038633.6_0	chr1	-	1815	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	34	199	34	-199	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTAGCCTTAGTGGAAT	NA	False	NA	-12	True	NA	NA	NA	182110335	182103535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_182104459_182106540_182107284_182110186
ENSMUSG00000038633.6_3	chr1	-	3886	2	FSM	ENSMUSG00000038633.6	ENSMUST00000132551.2	1405	2	46	-2527	46	-198	multi-exon	FALSE	canonical	3	1179	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTAGCCTTAGTGGAATT	NA	False	NA	-11	True	NA	NA	NA	182110323	182103534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_182107284_182110186
ENSMUSG00000038637.16_0	chr7	+	2541	13	FSM	ENSMUSG00000038637.16	ENSMUST00000070458.11	2502	13	-44	5	-25	-3	multi-exon	FALSE	canonical	3	14	junction_2	5.23609269080167	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCACTGCCTGCCTGGCC	372	False	NA	5	True	AATAAA	-9	NA	140774044	140789957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140774531_140775820_140775892_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
ENSMUSG00000038637.16_1	chr7	+	2598	13	NIC	ENSMUSG00000038637.16	novel	2502	13	NA	NA	-26	-3	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	7.1394833302013	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCACTGCCTGCCTGGCC	371	False	NA	5	True	AATAAA	-9	NA	140774043	140789957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140774531_140775820_140775892_140776894_140777083_140778130_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
ENSMUSG00000038637.16_12	chr7	+	1765	10	ISM	ENSMUSG00000038637.16	ENSMUST00000047093.11	2197	13	3232	-2	1376	0	3prime_fragment	FALSE	canonical	3	14	junction_3	5.39089309809254	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGCCTGGCCTGGCT	4550	False	NA	10	True	AATAAA	-14	NA	140778222	140789962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
ENSMUSG00000038637.16_8	chr7	+	3015	12	NIC	ENSMUSG00000038637.16	novel	2197	13	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	8.59559756623477	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCCTGGCTGACCT	419	False	NA	15	True	AATAAA	-19	NA	140774091	140789967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140775130_140775820_140775892_140776894_140777083_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
ENSMUSG00000038637.16_9	chr7	+	2210	13	FSM	ENSMUSG00000038637.16	ENSMUST00000047093.11	2197	13	-11	-2	-11	0	multi-exon	FALSE	canonical	1	3	junction_1	6.88597608670453	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGCCTGGCCTGGCT	1307	False	NA	10	True	AATAAA	-14	NA	140774979	140789962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140775130_140775820_140775892_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
ENSMUSG00000038644.15_1	chr7	-	3400	27	FSM	ENSMUSG00000038644.15	ENSMUST00000049343.15	3454	27	50	4	41	-1	multi-exon	FALSE	canonical	3	875	junction_26	151.95728923444	2285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCTGTGTGTTGTGGTC	NA	False	NA	-6	True	AATAAA	-17	NA	44198221	44182173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
ENSMUSG00000038644.15_4	chr7	-	3358	26	ISM	ENSMUSG00000038644.15	ENSMUST00000049343.15	3454	27	5410	4	-5019	-1	3prime_fragment	FALSE	canonical	3	933	junction_12	134.010745837787	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCTGTGTGTTGTGGTC	NA	False	NA	-6	True	AATAAA	-17	NA	44192861	44182173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664
ENSMUSG00000038646.14_1	chr7	+	1389	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	52	11	52	0	multi-exon	FALSE	canonical	3	441	junction_1	195	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAACTTTACCTTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	81412724	81419228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_81412805_81417274_81417472_81418116
ENSMUSG00000038646.14_5	chr7	+	1249	2	ISM	ENSMUSG00000038646.14	ENSMUST00000118190.2	1391	3	4243	61	4243	-61	3prime_fragment	FALSE	canonical	3	831	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTATATTATGTGTGTAC	NA	False	NA	NA	False	AATAAA	-15	NA	81417273	81419167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_81417472_81418116
ENSMUSG00000038648.6_0	chr6	-	3206	12	FSM	ENSMUSG00000038648.6	ENSMUST00000041093.6	7082	12	3	3873	3	3164	multi-exon	FALSE	canonical	3	82	junction_10	9.34552529156102	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATCCTTTCCTCTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	37419078	37308062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37356746_37356964_37418633
ENSMUSG00000038648.6_1	chr6	-	3143	1	ISM	ENSMUSG00000038648.6	ENSMUST00000041093.6	7082	12	111744	5	6133	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAATGTTGCCTGGTCTTT	NA	False	NA	-5	True	AATAAA	-13	NA	37307337	37304194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_37304200_37307300
ENSMUSG00000038648.6_19	chr6	-	3342	11	ISM	ENSMUSG00000038648.6	ENSMUST00000041093.6	7082	12	15	5587	15	1450	5prime_fragment	FALSE	canonical	3	82	junction_9	9.78825827203185	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTCCAGAGCAGATGTCA	NA	False	NA	NA	False	ATTAAA	-23	NA	37419066	37309776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37356746_37356964_37418633
ENSMUSG00000038648.6_5	chr6	-	2597	11	NNC	ENSMUSG00000038648.6	novel	7082	12	NA	NA	-40966	3164	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_10	25.5556256037687	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATCCTTTCCTCTTTC	8006	False	NA	NA	False	ATTAAA	-19	NA	37354436	37308062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37354383
ENSMUSG00000038650.16_0	chr7	-	1625	10	FSM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	31	0	31	0	multi-exon	FALSE	canonical	3	317	junction_9	147.871899850621	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	8023	False	NA	NA	False	ATTAAA	-14	NA	140752739	140740240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
ENSMUSG00000038650.16_1	chr7	-	1580	10	FSM	ENSMUSG00000038650.16	ENSMUST00000106033.5	2091	10	511	0	-26	0	multi-exon	FALSE	canonical	3	441	junction_9	110.454616120026	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	140748628	140740240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748588
ENSMUSG00000038650.16_3	chr7	-	1649	10	FSM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	7	2	7	0	multi-exon	FALSE	canonical	3	224	junction_9	176.376561249007	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	140748595	140740240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748486
ENSMUSG00000038650.16_6	chr7	-	1544	9	ISM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	1898	2	1337	0	3prime_fragment	FALSE	canonical	3	717	junction_7	37.8415694045583	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	140746704	140740240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595
ENSMUSG00000038658.16_0	chr19	+	5503	26	FSM	ENSMUSG00000038658.16	ENSMUST00000043610.13	7190	26	39	1648	-14	-4	multi-exon	FALSE	canonical	3	11	junction_12	5.44558536798387	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAATAGACTGTGGGAT	280	False	NA	NA	False	AATAAA	-12	NA	29499720	29582581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_29500067_29510564_29510673_29518655_29518736_29539384_29539493_29544619_29544763_29544884_29545022_29546741_29546834_29548145_29548235_29552131_29552277_29553253_29553303_29554982_29555136_29557164_29557369_29561574_29561614_29561866_29561978_29563180_29563271_29563939_29564101_29565107_29565247_29572198_29572316_29572670_29573400_29575146_29575306_29575389_29575527_29577231_29577519_29578217_29578410_29579672_29579851_29579991_29580181_29581260
ENSMUSG00000038658.16_13	chr19	+	2711	5	ISM	ENSMUSG00000038658.16	ENSMUST00000161330.2	2667	8	2022	136	2022	-136	intron_retention	FALSE	canonical	3	22	junction_1	5.3851648071345	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGTTATTGGTACCTG	NA	False	NA	NA	False	AATAAA	-16	NA	29577266	29583160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_29577519_29578217_29578410_29579672_29579851_29579991_29580181_29581260
ENSMUSG00000038658.16_14	chr19	+	2929	2	ISM	ENSMUSG00000038658.16	ENSMUST00000161330.2	2667	8	4900	-857	4900	-76	intron_retention	FALSE	canonical	3	36	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTAAACTTTTGTTTAC	NA	False	NA	80	True	AATAAA	-11	NA	29580144	29584153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_29580181_29581260
ENSMUSG00000038658.16_15	chr19	+	866	1	ISM	ENSMUSG00000038658.16	ENSMUST00000043610.13	7190	26	83600	82	8037	-82	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACACAAAAGTAAACTTTT	NA	False	NA	74	True	AATAAA	-5	NA	29583281	29584147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_29583300_29584100
ENSMUSG00000038658.16_2	chr19	+	5258	18	NNC	ENSMUSG00000038658.16	novel	7190	26	NA	NA	15	-8609	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	6.99629165242653	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATATTGGTCGCTTTAGA	256	False	NA	NA	False	NA	NA	NA	29499696	29568688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_29500067_29510564_29510673_29518655_29518736_29539384_29539493_29544619_29544763_29544884_29545022_29546741_29546834_29548145_29548235_29552131_29552277_29553253_29553303_29554982_29555136_29557164_29557369_29561574_29561614_29561866_29561978_29563180_29563271_29563939_29564101_29565107_29565890_29566291
ENSMUSG00000038658.16_26	chr19	+	3741	8	ISM	ENSMUSG00000038658.16	ENSMUST00000162492.8	3994	24	62188	-1683	-104	-13	3prime_fragment	FALSE	canonical	3	22	junction_4	4.65547735337152	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATGAATAAATAAA	NA	False	NA	NA	False	AATAGA	-37	NA	29572823	29583283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_29573400_29575146_29575306_29575389_29575527_29577231_29577519_29578217_29578410_29579672_29579851_29579991_29580181_29581260
ENSMUSG00000038658.16_3	chr19	+	4955	27	NIC	ENSMUSG00000038658.16	novel	7190	26	NA	NA	23	-155	combination_of_known_junctions	FALSE	canonical	0	0	junction_26	6.95345897492581	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAGCAGTTGTCATAG	264	False	NA	NA	False	AATAAA	-23	NA	29499704	29582430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_29500067_29510564_29510673_29518655_29518736_29539384_29539493_29544619_29544763_29544884_29545022_29546741_29546834_29548145_29548235_29552131_29552277_29553253_29553303_29554982_29555136_29557164_29557369_29561574_29561614_29561866_29561978_29563180_29563271_29563939_29564101_29565107_29565247_29572198_29572316_29572670_29573400_29575146_29575306_29575389_29575527_29577231_29577519_29578217_29578410_29579672_29579851_29579991_29580181_29581260_29581633_29582045
ENSMUSG00000038664.17_16	chr9	+	7376	41	NIC	ENSMUSG00000038664.17	novel	15153	78	NA	NA	144	-3	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	13.2253544375945	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTGGGGCCGCTGTTGTT	7989	False	NA	5	True	AATAAA	-16	NA	66358551	66416054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_66358761_66360618_66360818_66363217_66363379_66364718_66364836_66365475_66365708_66367689_66367815_66368981_66369182_66370110_66370380_66371987_66372041_66372662_66372864_66373780_66373956_66374664_66374936_66375041_66375256_66376259_66376466_66377519_66377648_66379127_66379256_66380664_66380866_66382015_66382147_66383202_66383403_66383609_66383716_66386226_66386374_66386712_66386815_66388143_66388318_66389085_66389380_66390938_66391005_66391159_66391286_66392180_66392320_66393348_66393531_66394205_66394362_66395230_66395354_66396611_66396715_66399239_66399410_66400437_66400577_66403181_66403352_66404450_66404621_66404870_66405037_66405961_66406039_66408457_66408711_66409211_66409365_66411869_66412176_66415420
ENSMUSG00000038664.17_24	chr9	+	4734	27	ISM	ENSMUSG00000038664.17	ENSMUST00000042824.13	15153	78	119718	7	1623	-7	3prime_fragment	FALSE	canonical	3	17	junction_3	10.5813976549112	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAGAGTGGGGCCGCTGT	4275	False	NA	1	True	AATAAA	-12	NA	66377525	66416050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_66377648_66379127_66379256_66380664_66380866_66382015_66382147_66383202_66383403_66383609_66383716_66386226_66386374_66386712_66386815_66388143_66388318_66389085_66389380_66390938_66391005_66391159_66391286_66392180_66392320_66393348_66393531_66394205_66394362_66395230_66395354_66396611_66396715_66399239_66399410_66400437_66400577_66403181_66403352_66404450_66404621_66404870_66405037_66405961_66406039_66408457_66408711_66409211_66409365_66411869_66412176_66415420
ENSMUSG00000038664.17_25	chr9	+	4610	26	ISM	ENSMUSG00000038664.17	ENSMUST00000042824.13	15153	78	121326	3	3231	-3	3prime_fragment	FALSE	canonical	3	17	junction_2	10.6751299757895	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTGGGGCCGCTGTTGTT	5883	False	NA	5	True	AATAAA	-16	NA	66379133	66416054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_66379256_66380664_66380866_66382015_66382147_66383202_66383403_66383609_66383716_66386226_66386374_66386712_66386815_66388143_66388318_66389085_66389380_66390938_66391005_66391159_66391286_66392180_66392320_66393348_66393531_66394205_66394362_66395230_66395354_66396611_66396715_66399239_66399410_66400437_66400577_66403181_66403352_66404450_66404621_66404870_66405037_66405961_66406039_66408457_66408711_66409211_66409365_66411869_66412176_66415420
ENSMUSG00000038664.17_28	chr9	+	3777	21	ISM	ENSMUSG00000038664.17	ENSMUST00000042824.13	15153	78	128492	3	10397	-3	3prime_fragment	FALSE	canonical	3	25	junction_12	9.81376584191818	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTGGGGCCGCTGTTGTT	NA	False	NA	5	True	AATAAA	-16	NA	66386299	66416054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_66386374_66386712_66386815_66388143_66388318_66389085_66389380_66390938_66391005_66391159_66391286_66392180_66392320_66393348_66393531_66394205_66394362_66395230_66395354_66396611_66396715_66399239_66399410_66400437_66400577_66403181_66403352_66404450_66404621_66404870_66405037_66405961_66406039_66408457_66408711_66409211_66409365_66411869_66412176_66415420
ENSMUSG00000038664.17_29	chr9	+	3260	18	ISM	ENSMUSG00000038664.17	ENSMUST00000042824.13	15153	78	131445	3	13350	-3	3prime_fragment	FALSE	canonical	3	25	junction_9	9.99688532808973	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTGGGGCCGCTGTTGTT	NA	False	NA	5	True	AATAAA	-16	NA	66389252	66416054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_66389380_66390938_66391005_66391159_66391286_66392180_66392320_66393348_66393531_66394205_66394362_66395230_66395354_66396611_66396715_66399239_66399410_66400437_66400577_66403181_66403352_66404450_66404621_66404870_66405037_66405961_66406039_66408457_66408711_66409211_66409365_66411869_66412176_66415420
ENSMUSG00000038664.17_31	chr9	+	2681	14	ISM	ENSMUSG00000038664.17	ENSMUST00000042824.13	15153	78	135658	7	-10371	-7	3prime_fragment	FALSE	canonical	3	25	junction_5	9.91024811755383	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAGAGTGGGGCCGCTGT	NA	False	NA	1	True	AATAAA	-12	NA	66393465	66416050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_66393531_66394205_66394362_66395230_66395354_66396611_66396715_66399239_66399410_66400437_66400577_66403181_66403352_66404450_66404621_66404870_66405037_66405961_66406039_66408457_66408711_66409211_66409365_66411869_66412176_66415420
ENSMUSG00000038664.17_32	chr9	+	2525	13	ISM	ENSMUSG00000038664.17	ENSMUST00000042824.13	15153	78	136482	14	-9547	-14	3prime_fragment	FALSE	canonical	3	25	junction_4	9.8952850725316	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAGGAATCAGAGTGGGG	NA	False	NA	-6	True	AATAAA	-5	NA	66394289	66416043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_66394362_66395230_66395354_66396611_66396715_66399239_66399410_66400437_66400577_66403181_66403352_66404450_66404621_66404870_66405037_66405961_66406039_66408457_66408711_66409211_66409365_66411869_66412176_66415420
ENSMUSG00000038664.17_40	chr9	+	434	1	ISM	ENSMUSG00000038664.17	ENSMUST00000042824.13	15153	78	157809	7	8081	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAGAGTGGGGCCGCTGT	NA	False	NA	1	True	AATAAA	-12	NA	66415616	66416050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_66415600_66416000
ENSMUSG00000038664.17_51	chr9	+	5337	30	ISM	ENSMUSG00000038664.17	ENSMUST00000042824.13	15153	78	116955	3	-1140	-3	3prime_fragment	FALSE	canonical	3	17	junction_6	10.5441712882974	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTGGGGCCGCTGTTGTT	1512	False	NA	5	True	AATAAA	-16	NA	66374762	66416054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_66374936_66375041_66375256_66376259_66376466_66377519_66377648_66379127_66379256_66380664_66380866_66382015_66382147_66383202_66383403_66383609_66383716_66386226_66386374_66386712_66386815_66388143_66388318_66389085_66389380_66390938_66391005_66391159_66391286_66392180_66392320_66393348_66393531_66394205_66394362_66395230_66395354_66396611_66396715_66399239_66399410_66400437_66400577_66403181_66403352_66404450_66404621_66404870_66405037_66405961_66406039_66408457_66408711_66409211_66409365_66411869_66412176_66415420
ENSMUSG00000038668.15_0	chr4	-	3317	4	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	133	-7	combination_of_known_junctions	FALSE	canonical	3	105	junction_3	79.7927871983984	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGATGTGTGGTTC	-7	True	NA	-12	True	AATAAA	-15	NA	58553765	58435261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58553729
ENSMUSG00000038668.15_1	chr4	-	3401	4	FSM	ENSMUSG00000038668.15	ENSMUST00000055018.11	3512	4	104	7	58	-7	multi-exon	FALSE	canonical	3	120	junction_3	72.8941393772885	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGATGTGTGGTTC	505	False	58553269	-12	True	AATAAA	-15	NA	58553253	58435261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_58437635_58486476_58487225_58504621_58504782_58553133
ENSMUSG00000038668.15_13	chr4	-	3456	5	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	133	-7	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	115.15288750179	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGATGTGTGGTTC	-7	True	NA	-12	True	AATAAA	-15	NA	58553765	58435261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58543809_58543949_58553729
ENSMUSG00000038668.15_16	chr4	-	3286	3	ISM	ENSMUSG00000038668.15	ENSMUST00000107571.8	3543	4	48525	7	-5383	-7	3prime_fragment	FALSE	canonical	3	250	junction_1	20.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGATGTGTGGTTC	NA	False	NA	-12	True	AATAAA	-15	NA	58504786	58435261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_58437635_58486476_58487225_58504621
ENSMUSG00000038668.15_4	chr4	-	2826	2	ISM	ENSMUSG00000038668.15	ENSMUST00000107570.2	3244	3	12478	3	12478	-3	3prime_fragment	FALSE	canonical	3	250	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGATGTGTGGTTCTGGT	NA	False	NA	-8	True	AATAAA	-19	NA	58486925	58435257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_58437635_58486476
ENSMUSG00000038668.15_5	chr4	-	3522	5	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-51	-7	combination_of_known_splicesites	FALSE	canonical	2	16	junction_4	115.15288750179	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGATGTGTGGTTC	-11	True	NA	-12	True	AATAAA	-15	NA	58553235	58435261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58543809_58543949_58553133
ENSMUSG00000038668.15_9	chr4	-	1862	1	ISM	ENSMUSG00000038668.15	ENSMUST00000107570.2	3244	3	62280	7	62280	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGATGTGTGGTTC	6995	False	NA	-12	True	AATAAA	-15	NA	58437123	58435261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_58435300_58437100
ENSMUSG00000038670.12_0	chr7	-	1114	8	ISM	ENSMUSG00000038670.12	ENSMUST00000165208.4	3611	28	17537	24	1959	-24	3prime_fragment	FALSE	canonical	2	4	junction_7	5.67845911838623	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATCATGTGTCCATCT	NA	False	NA	-19	True	GATAAA	-13	NA	44156543	44151146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44151267_44153060_44153248_44154422_44154560_44154659_44154820_44154989_44155130_44155475_44155672_44156231_44156321_44156458
ENSMUSG00000038670.12_1	chr7	-	1009	7	ISM	ENSMUSG00000038670.12	ENSMUST00000165208.4	3611	28	17785	19	2207	-19	3prime_fragment	FALSE	canonical	3	6	junction_5	5.14511634681104	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGTGTCCATCTTTCCA	NA	False	NA	-14	True	GATAAA	-18	NA	44156295	44151141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44151267_44153060_44153248_44154422_44154560_44154659_44154820_44154989_44155130_44155475_44155672_44156231
ENSMUSG00000038670.12_2	chr7	-	3587	28	FSM	ENSMUSG00000038670.12	ENSMUST00000165208.4	3611	28	1	23	1	-23	multi-exon	FALSE	canonical	0	0	junction_8	5.68394847207433	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATCATGTGTCCATCTT	NA	False	NA	-18	True	GATAAA	-14	NA	44174079	44151145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44151267_44153060_44153248_44154422_44154560_44154659_44154820_44154989_44155130_44155475_44155672_44156231_44156321_44156458_44156627_44157654_44157790_44158392_44158582_44158957_44159063_44159154_44159315_44161232_44161373_44161515_44161546_44161884_44161992_44163091_44163258_44164272_44164446_44165349_44165456_44165566_44165692_44165806_44165940_44166234_44166429_44169756_44169817_44170162_44170212_44171098_44171217_44171403_44171553_44171744_44171832_44172254_44172333_44173994
ENSMUSG00000038671.16_0	chr2	-	1722	8	FSM	ENSMUSG00000038671.16	ENSMUST00000127988.8	2447	8	54	671	1	596	multi-exon	FALSE	canonical	3	258	junction_2	23.8627025172878	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATCCCTTCAATCAGTT	6130	False	NA	-20	True	AATAAA	-13	NA	181007143	181000296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
ENSMUSG00000038671.16_10	chr2	-	2448	6	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	1	601	intron_retention	FALSE	canonical	3	258	junction_2	26.2937254872717	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTTCAATCAGTTAGATG	6130	False	NA	-15	True	AATAAA	-18	NA	181007143	181000291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181006192_181006397
ENSMUSG00000038671.16_13	chr2	-	2957	4	ISM	ENSMUSG00000038671.16	ENSMUST00000048269.12	1087	7	-19	-924	-1	596	intron_retention	FALSE	canonical	3	258	junction_2	32.355662392986	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATCCCTTCAATCAGTT	6141	False	NA	-20	True	AATAAA	-13	NA	181007132	181000296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181001355_181001431_181001533_181002793_181003266_181005806
ENSMUSG00000038671.16_2	chr2	-	884	8	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	90.1022095359781	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTAGGTATTCAGA	6144	False	NA	NA	False	NA	NA	NA	181007129	181001107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006492_181007011
ENSMUSG00000038671.16_26	chr2	-	2029	7	ISM	ENSMUSG00000038671.16	ENSMUST00000108808.8	1133	8	201	-596	117	596	3prime_fragment	FALSE	canonical	3	258	junction_2	24.0537592349581	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATCCCTTCAATCAGTT	6330	False	NA	-20	True	AATAAA	-13	NA	181006943	181000296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397
ENSMUSG00000038671.16_8	chr2	-	2649	5	FSM	ENSMUSG00000038671.16	ENSMUST00000152580.8	1822	5	-16	-811	1	596	multi-exon	FALSE	canonical	3	258	junction_2	29.3715423496962	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATCCCTTCAATCAGTT	6130	False	NA	-20	True	AATAAA	-13	NA	181007143	181000296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806
ENSMUSG00000038677.15_15	chr17	+	4325	6	ISM	ENSMUSG00000038677.15	ENSMUST00000148342.8	4003	16	5677	-1813	629	-14	3prime_fragment	FALSE	canonical	3	23	junction_3	5.69209978830308	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAACTCCGAGGTCTA	NA	False	NA	NA	False	ATTAAA	-6	NA	28385411	28393814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28385499_28385999_28386162_28386483_28386682_28387102_28387256_28387355_28387436_28390169
ENSMUSG00000038677.15_16	chr17	+	2346	1	ISM	ENSMUSG00000038677.15	ENSMUST00000043503.11	6876	22	30358	10	6690	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTCCGAGGTCTAGCAA	NA	False	NA	NA	False	ATTAAA	-10	NA	28391472	28393818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28391500_28393800
ENSMUSG00000038677.15_19	chr17	+	3208	22	NIC	ENSMUSG00000038677.15	novel	3822	23	NA	NA	-28	-493	combination_of_known_junctions	FALSE	canonical	2	7	junction_16	10.2313377477651	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACACCAGGCGCTCTCCC	NA	False	NA	-2	True	AAGAAA	-26	NA	28361263	28390423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28361585_28371371_28371495_28372532_28372659_28374865_28375001_28375735_28375862_28376046_28376164_28377854_28377903_28379785_28379903_28381289_28381413_28381927_28382045_28382705_28382832_28383018_28383136_28383271_28383377_28383647_28383765_28384036_28384196_28384400_28384617_28385330_28385499_28385999_28386162_28386483_28386682_28387102_28387256_28387355_28387436_28390169
ENSMUSG00000038677.15_3	chr17	+	3528	23	FSM	ENSMUSG00000038677.15	ENSMUST00000137147.9	3822	23	-389	683	-4	-488	multi-exon	TRUE	canonical	3	10	junction_6	8.92716163604273	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGCGCTCTCCCTTTCG	NA	False	NA	3	True	AAGAAA	-31	NA	28361110	28390428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28361585_28371371_28371495_28372532_28372659_28374865_28375001_28375735_28375862_28376046_28376164_28377854_28377903_28379785_28379903_28381289_28381413_28381927_28382045_28382705_28382832_28383018_28383136_28383271_28383377_28383647_28383765_28384036_28384196_28384400_28384617_28384960_28385123_28385330_28385499_28385999_28386162_28386483_28386682_28387102_28387256_28387355_28387436_28390169
ENSMUSG00000038677.15_4	chr17	+	3311	22	FSM	ENSMUSG00000038677.15	ENSMUST00000043503.11	6876	22	163	3402	-14	-490	multi-exon	FALSE	canonical	3	23	junction_15	6.58693821908486	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCAGGCGCTCTCCCTTT	NA	False	NA	1	True	AAGAAA	-29	NA	28361277	28390426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28361585_28371371_28371495_28372532_28372659_28374865_28375001_28375735_28375862_28376046_28376164_28379785_28379903_28381289_28381413_28381927_28382045_28382705_28382832_28383018_28383136_28383271_28383377_28383647_28383765_28384036_28384196_28384400_28384617_28384960_28385123_28385330_28385499_28385999_28386162_28386483_28386682_28387102_28387256_28387355_28387436_28390169
ENSMUSG00000038677.15_5	chr17	+	3137	21	NIC	ENSMUSG00000038677.15	novel	6876	22	NA	NA	0	-488	combination_of_known_junctions	FALSE	canonical	2	7	junction_15	8.34805366537614	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGCGCTCTCCCTTTCG	NA	False	NA	3	True	AAGAAA	-31	NA	28361291	28390428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_28361585_28371371_28371495_28372532_28372659_28374865_28375001_28375735_28375862_28376046_28376164_28379785_28379903_28381289_28381413_28381927_28382045_28382705_28382832_28383018_28383136_28383271_28383377_28383647_28383765_28384036_28384196_28384400_28384617_28385330_28385499_28385999_28386162_28386483_28386682_28387102_28387256_28387355_28387436_28390169
ENSMUSG00000038679.17_0	chr15	-	3362	1	ISM	ENSMUSG00000038679.17	ENSMUST00000165201.9	9859	6	231131	447	168961	-447	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGACGGCTTTGGTAT	NA	False	NA	-6	True	AATAAA	-16	NA	50521956	50518594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_50518600_50522000
ENSMUSG00000038679.17_1	chr15	-	7880	4	ISM	ENSMUSG00000038679.17	ENSMUST00000184885.8	3492	9	51363	-5236	-3922	-447	3prime_fragment	FALSE	canonical	3	17	junction_2	3.2659863237109	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGACGGCTTTGGTAT	8864	False	NA	-6	True	AATAAA	-16	NA	50694839	50518594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_50525133_50528082_50528206_50685500_50686105_50694224
ENSMUSG00000038679.17_2	chr15	-	6528	6	FSM	ENSMUSG00000038679.17	ENSMUST00000165201.9	9859	6	-358	3689	-8	-12	multi-exon	FALSE	canonical	3	11	junction_5	5.30659966456864	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATGGAAAAAGAA	9960	False	NA	16	True	NA	NA	NA	50753445	50521836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_50525133_50528082_50528206_50685500_50686105_50694224_50695355_50709409_50710339_50752999
ENSMUSG00000038679.17_3	chr15	-	9392	6	NIC	ENSMUSG00000038679.17	novel	9859	6	NA	NA	47	-452	intron_retention	FALSE	canonical	2	3	junction_5	7.63151361133557	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTATCCATGACGGCTTT	9593	False	NA	-11	True	AATAAA	-11	NA	50753812	50518599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_50525133_50528082_50528206_50685500_50686105_50694224_50695355_50709409_50710339_50753739
ENSMUSG00000038679.17_4	chr15	-	6398	6	FSM	ENSMUSG00000038679.17	ENSMUST00000183757.8	6202	6	-28	-168	-28	150	multi-exon	FALSE	canonical	1	1	junction_5	8.30421579681068	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGACTTGATATAATTTA	NA	False	NA	0	True	AATAAA	-28	NA	50752473	50521656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_50525133_50528082_50528206_50685500_50686105_50694224_50695355_50709409_50710339_50752337
ENSMUSG00000038679.17_5	chr15	-	9228	5	ISM	ENSMUSG00000038679.17	ENSMUST00000165201.9	9859	6	42845	447	-19325	-447	3prime_fragment	FALSE	canonical	3	12	junction_4	4.81534007106456	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGACGGCTTTGGTAT	4975	False	NA	-6	True	AATAAA	-16	NA	50710242	50518594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_50525133_50528082_50528206_50685500_50686105_50694224_50695355_50709409
ENSMUSG00000038683.17_0	chr13	+	1478	10	FSM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	236	8	-1	0	multi-exon	FALSE	canonical	3	605	junction_5	43.1108247413169	599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAATACAGAGCTTAATT	NA	False	NA	NA	False	AGTAAA	-20	NA	41154734	41166483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
ENSMUSG00000038685.19_13	chr2	+	4283	33	FSM	ENSMUSG00000038685.19	ENSMUST00000108815.8	4243	33	-44	4	2	-2	multi-exon	FALSE	canonical	3	92	junction_30	41.94582396899	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATGGTGTCTGTATTGTG	NA	False	NA	11	True	AATAAA	-12	NA	180961533	180998405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716
ENSMUSG00000038685.19_14	chr2	+	4112	35	NIC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	86	junction_33	59.5404619481285	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATGGTGTCTGTATTGTG	NA	False	NA	11	True	AATAAA	-12	NA	180961527	180998405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
ENSMUSG00000038685.19_19	chr2	+	4302	33	FSM	ENSMUSG00000038685.19	ENSMUST00000098971.11	4307	33	1	4	1	-2	multi-exon	TRUE	canonical	3	28	junction_30	51.0130095998805	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATGGTGTCTGTATTGTG	NA	False	NA	11	True	AATAAA	-12	NA	180961532	180998405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997102_180997346_180997443_180997606_180997716
ENSMUSG00000038685.19_4	chr2	+	4398	34	FSM	ENSMUSG00000038685.19	ENSMUST00000108814.8	4322	34	-42	-34	4	-2	multi-exon	FALSE	canonical	3	117	junction_31	42.9439380842258	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATGGTGTCTGTATTGTG	NA	False	NA	11	True	AATAAA	-12	NA	180961535	180998405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716
ENSMUSG00000038685.19_5	chr2	+	4411	34	FSM	ENSMUSG00000038685.19	ENSMUST00000054622.15	4401	34	-14	4	-5	-2	multi-exon	FALSE	canonical	3	57	junction_31	50.0269348938753	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATGGTGTCTGTATTGTG	NA	False	NA	11	True	AATAAA	-12	NA	180961540	180998405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716
ENSMUSG00000038685.19_7	chr2	+	4217	36	NIC	ENSMUSG00000038685.19	novel	4322	34	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	3	86	junction_34	59.3590527456187	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATGGTGTCTGTATTGTG	NA	False	NA	11	True	AATAAA	-12	NA	180961539	180998405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
ENSMUSG00000038690.16_0	chr5	-	423	4	FSM	ENSMUSG00000038690.16	ENSMUST00000161741.8	955	4	523	9	-11	-1	multi-exon	FALSE	canonical	3	4948	junction_3	568.415341101909	820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGCTTGCCTGGTGTAG	8620	False	NA	-11	True	AATAAA	-16	NA	145128349	145120516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145128312
ENSMUSG00000038690.16_8	chr5	-	385	3	ISM	ENSMUSG00000038690.16	ENSMUST00000037056.9	540	5	4358	0	4277	0	3prime_fragment	FALSE	canonical	3	5440	junction_1	441	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATACTGCTTGCCTGGTGT	8910	False	NA	-13	True	AATAAA	-14	NA	145124044	145120518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_145120678_145121341_145121459_145123935
ENSMUSG00000038692.9_0	chr11	+	2130	2	FSM	ENSMUSG00000038692.9	ENSMUST00000049241.9	2566	2	429	7	429	-7	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCACATCGTGGTTTTG	6072	False	NA	NA	False	AATAAA	-17	NA	96209521	96212457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96210050_96210855
ENSMUSG00000038695.14_0	chr7	+	982	6	FSM	ENSMUSG00000038695.14	ENSMUST00000118493.8	922	6	-31	-29	2	1	multi-exon	FALSE	canonical	3	11	junction_1	23.6016948543955	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTGCCTGGGCTCAGC	4803	False	NA	22	True	AATAAA	-14	NA	44117464	44121074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44117615_44117729_44117842_44118230_44118394_44119835_44119962_44120536_44120732_44120838
ENSMUSG00000038695.14_1	chr7	+	851	5	FSM	ENSMUSG00000038695.14	ENSMUST00000118628.8	864	5	16	-3	11	0	multi-exon	FALSE	canonical	3	36	junction_1	14.4460202131937	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGCCTGGGCTCAGCT	4823	False	NA	23	True	AATAAA	-15	NA	44117484	44121075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44117615_44118230_44118394_44119835_44119962_44120536_44120732_44120838
ENSMUSG00000038695.14_13	chr7	+	1075	5	NIC	ENSMUSG00000038695.14	novel	922	6	NA	NA	-8	0	intron_retention	FALSE	canonical	3	14	junction_1	21.4869146226256	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGCCTGGGCTCAGCT	4826	False	NA	23	True	AATAAA	-15	NA	44117487	44121075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44117842_44118230_44118394_44119835_44119962_44120536_44120732_44120838
ENSMUSG00000038695.14_15	chr7	+	3540	1	FSM	ENSMUSG00000098661.3	ENSMUST00000184821.3	65	1	-2235	-1240	-2235	1240	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGCCTGGGCTCAGCT	4874	False	NA	23	True	AATAAA	-15	NA	44117535	44121075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44117500_44121100
ENSMUSG00000038695.14_2	chr7	+	910	6	NIC	ENSMUSG00000038695.14	novel	922	6	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	25.8580741742304	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGCCTGGGCTCAGCT	4822	False	NA	23	True	AATAAA	-15	NA	44117483	44121075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44117615_44117783_44117842_44118230_44118394_44119835_44119962_44120536_44120732_44120838
ENSMUSG00000038696.15_0	chr2	+	2048	12	NIC	ENSMUSG00000038696.15	novel	3018	11	NA	NA	34	-5	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	61.6099433855197	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGTGGTTGGTATGATGGA	NA	False	NA	21	True	AATAAA	-15	NA	34296816	34513926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_34296861_34322014_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ENSMUSG00000038696.15_11	chr2	+	2068	11	FSM	ENSMUSG00000038696.15	ENSMUST00000124443.8	1630	11	1	-439	1	-5	multi-exon	FALSE	canonical	3	20	junction_1	60.6699266523374	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGTGGTTGGTATGATGGA	NA	False	NA	21	True	AATAAA	-15	NA	34296874	34513926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_34297267_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ENSMUSG00000038696.15_3	chr2	+	2401	12	FSM	ENSMUSG00000038696.15	ENSMUST00000147337.8	3111	12	-319	1029	2	1	multi-exon	FALSE	canonical	3	190	junction_6	16.5988150527989	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGTATGATGGACCATTC	NA	False	NA	27	True	AATAAA	-21	NA	34296875	34513932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_34297267_34322014_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ENSMUSG00000038696.15_6	chr2	+	3315	11	NIC	ENSMUSG00000038696.15	novel	3111	12	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	3	13	junction_7	63.4010252283037	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACCCTCTTTTGTATAT	NA	False	NA	NA	False	AATAAA	-7	NA	34296875	34514954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_34297267_34322014_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ENSMUSG00000038696.15_7	chr2	+	1977	10	NIC	ENSMUSG00000038696.15	novel	3111	12	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	57.8179347628996	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGTGGTTGGTATGATGGA	NA	False	NA	21	True	AATAAA	-15	NA	34296875	34513926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_34297267_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ENSMUSG00000038697.16_0	chr8	-	2955	5	FSM	ENSMUSG00000038697.16	ENSMUST00000093039.6	2912	5	-43	0	-43	0	multi-exon	FALSE	canonical	3	323	junction_4	121.207208944023	794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGTGGCATCT	4051	False	NA	36	True	ATTAAA	-15	NA	124747790	124723056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747599
ENSMUSG00000038697.16_1	chr8	-	2974	5	FSM	ENSMUSG00000038697.16	ENSMUST00000165628.9	2973	5	-1	0	-1	0	multi-exon	FALSE	canonical	3	200	junction_4	173.639713199487	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGTGGCATCT	3704	False	NA	36	True	ATTAAA	-15	NA	124748137	124723056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747927
ENSMUSG00000038697.16_2	chr8	-	1591	1	ISM	ENSMUSG00000038697.16	ENSMUST00000093039.6	2912	5	23100	0	23032	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGTGGCATCT	NA	False	NA	36	True	ATTAAA	-15	NA	124724647	124723056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_124723100_124724600
ENSMUSG00000038702.7_0	chr1	-	5548	3	NIC	ENSMUSG00000038702.7	novel	622	2	NA	NA	-10	-22	intron_retention	FALSE	canonical	3	7	junction_2	3.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAATAAAAAAACAAAAAT	NA	False	NA	NA	False	NA	NA	NA	111792623	111786457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_111791371_111791824_111791962_111792125
ENSMUSG00000038702.7_1	chr1	-	2850	1	NIC	ENSMUSG00000038702.7	novel	3063	3	NA	NA	3212	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTACGTTGTATAGTGTT	NA	False	NA	NA	False	AATAAA	-13	NA	111789286	111786436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_111786400_111789300
ENSMUSG00000038702.7_2	chr1	-	5700	2	FSM	ENSMUSG00000038702.7	ENSMUST00000035462.7	5759	2	30	29	-5	-29	multi-exon	FALSE	canonical	3	14	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACGAGAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111792618	111786464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_111791371_111791824
ENSMUSG00000038705.14_0	chr2	-	4084	10	FSM	ENSMUSG00000038705.14	ENSMUST00000049032.13	4121	10	31	6	12	-6	multi-exon	FALSE	canonical	3	53	junction_5	10.3171916936948	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATTCGTGTGTTTGTCTC	6207	False	NA	-10	True	AATAAA	-10	NA	180929797	180893247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_180896217_180896934_180897058_180897287_180897426_180897664_180897737_180900776_180900935_180902087_180902192_180906773_180906902_180907607_180907706_180919741_180919915_180929676
ENSMUSG00000038705.14_1	chr2	-	2028	1	ISM	ENSMUSG00000038705.14	ENSMUST00000049032.13	4121	10	34555	4	2651	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCGTGTGTTTGTCTCTT	NA	False	NA	-8	True	AATAAA	-12	NA	180895273	180893245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_180893200_180895300
ENSMUSG00000038705.14_2	chr2	-	3968	9	ISM	ENSMUSG00000038705.14	ENSMUST00000049032.13	4121	10	9915	0	-38	0	3prime_fragment	FALSE	canonical	3	53	junction_5	10.2339813855606	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGTTTGTCTCTTGTAA	1105	False	NA	-4	True	AATAAA	-16	NA	180919913	180893241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_180896217_180896934_180897058_180897287_180897426_180897664_180897737_180900776_180900935_180902087_180902192_180906773_180906902_180907607_180907706_180919741
ENSMUSG00000038705.14_4	chr2	-	4075	10	NIC	ENSMUSG00000038705.14	novel	4121	10	NA	NA	18	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	25.1827885569921	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCGTGTGTTTGTCTCTT	6213	False	NA	-8	True	AATAAA	-12	NA	180929791	180893245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_180896217_180896934_180897058_180897287_180897426_180897664_180897737_180900776_180900935_180902087_180902192_180906773_180906897_180907607_180907706_180919741_180919915_180929676
ENSMUSG00000038708.11_0	chr9	+	7567	24	NIC	ENSMUSG00000038708.11	novel	7583	24	NA	NA	-6	-3	combination_of_known_junctions	FALSE	canonical	3	39	junction_9	57.6555182976455	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATAGTGTTCATTGTG	NA	False	NA	4	True	AATAAA	-12	NA	118335328	118411584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118367944_118368093_118377690_118377870_118380899_118381032_118382502_118382659_118384640_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118408609_118408675_118410916
ENSMUSG00000038708.11_1	chr9	+	7587	24	NNC	ENSMUSG00000038708.11	novel	7583	24	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_12	53.3849663424073	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATAGTGTTCATTGTG	NA	False	NA	4	True	AATAAA	-12	NA	118335324	118411584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118366309_118366394_118367944_118368093_118377690_118377870_118380902_118381032_118382502_118382659_118384640_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118410916
ENSMUSG00000038708.11_2	chr9	+	7586	24	FSM	ENSMUSG00000038708.11	ENSMUST00000084820.6	7583	24	-6	3	-6	-3	multi-exon	FALSE	canonical	3	96	junction_12	49.6666772391441	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATAGTGTTCATTGTG	NA	False	NA	4	True	AATAAA	-12	NA	118335328	118411584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118366309_118366394_118367944_118368093_118377690_118377870_118380899_118381032_118382502_118382659_118384640_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118410916
ENSMUSG00000038708.11_23	chr9	+	7501	23	NIC	ENSMUSG00000038708.11	novel	7583	24	NA	NA	-5	-3	combination_of_known_junctions	FALSE	canonical	3	39	junction_9	54.2322256367988	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATAGTGTTCATTGTG	NA	False	NA	4	True	AATAAA	-12	NA	118335329	118411584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118367944_118368093_118377690_118377870_118380899_118381032_118382502_118382659_118384640_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118410916
ENSMUSG00000038708.11_52	chr9	+	3789	10	ISM	ENSMUSG00000038708.11	ENSMUST00000084820.6	7583	24	51117	3	604	-3	3prime_fragment	FALSE	canonical	3	147	junction_9	30.9587539226702	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATAGTGTTCATTGTG	NA	False	NA	4	True	AATAAA	-12	NA	118386451	118411584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118410916
ENSMUSG00000038708.11_54	chr9	+	3382	11	FSM	ENSMUSG00000038708.11	ENSMUST00000211840.2	4461	11	1076	3	1076	-3	multi-exon	FALSE	canonical	3	74	junction_10	60.3685348505329	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATAGTGTTCATTGTG	NA	False	NA	4	True	AATAAA	-12	NA	118386923	118411584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118408609_118408675_118410916
ENSMUSG00000038708.11_6	chr9	+	7652	25	NIC	ENSMUSG00000038708.11	novel	7583	24	NA	NA	-7	-3	combination_of_known_junctions	FALSE	canonical	3	74	junction_24	53.463318161978	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATAGTGTTCATTGTG	NA	False	NA	4	True	AATAAA	-12	NA	118335327	118411584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118366309_118366394_118367944_118368093_118377690_118377870_118380899_118381032_118382502_118382659_118384640_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118408609_118408675_118410916
ENSMUSG00000038712.17_0	chr3	+	2867	12	NIC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	-3	0	combination_of_known_junctions	TRUE	canonical	1	2	junction_2	65.9633005905055	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATTTGCGTTCCTACCT	NA	False	NA	10	True	AATAAA	-11	NA	95188652	95203472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95188923_95189993_95190056_95190541_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
ENSMUSG00000038712.17_16	chr3	+	2280	10	NIC	ENSMUSG00000038712.17	novel	1812	9	NA	NA	536	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	57.7119282875444	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTGCGTTCCTACCTTG	NA	False	NA	12	True	AATAAA	-13	NA	95194045	95203474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95194184_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
ENSMUSG00000038712.17_4	chr3	+	2587	10	FSM	ENSMUSG00000038712.17	ENSMUST00000107187.9	2827	10	237	3	-34	0	multi-exon	FALSE	canonical	3	130	junction_1	26.9118359384908	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTGCGTTCCTACCTTG	NA	False	NA	12	True	AATAAA	-13	NA	95190491	95203474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
ENSMUSG00000038712.17_8	chr3	+	2687	10	FSM	ENSMUSG00000038712.17	ENSMUST00000039537.14	2800	10	110	3	110	0	multi-exon	FALSE	canonical	3	18	junction_8	52.7870167352017	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTGCGTTCCTACCTTG	NA	False	NA	12	True	AATAAA	-13	NA	95190364	95203474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202610_95202737_95202961
ENSMUSG00000038717.10_0	chr9	-	451	3	FSM	ENSMUSG00000038717.10	ENSMUST00000043675.9	544	3	35	58	0	-5	multi-exon	FALSE	canonical	3	4613	junction_2	56	621	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACACTGCTGTGTTTTCT	NA	False	NA	-34	True	AATAAA	-14	NA	44832005	44824572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44824765_44825948_44826110_44831907
ENSMUSG00000038718.16_1	chr2	-	3143	8	FSM	ENSMUSG00000038718.16	ENSMUST00000113132.9	2734	8	-416	7	-410	-7	multi-exon	FALSE	canonical	3	6	junction_2	11.7577590534584	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTACATGCCATGTGTG	422	False	NA	NA	False	AATAAA	-17	NA	34262466	34061475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34062986_34065876_34065967_34068188_34068355_34094791_34094928_34103263_34103455_34114416_34114659_34260835_34260910_34261732
ENSMUSG00000038718.16_2	chr2	-	3464	9	FSM	ENSMUSG00000038718.16	ENSMUST00000040638.15	2587	9	-618	-259	480	-7	multi-exon	FALSE	canonical	3	23	junction_3	7.22733526273688	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTACATGCCATGTGTG	214	False	NA	NA	False	AATAAA	-17	NA	34262674	34061475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34062986_34065876_34065967_34066760_34066874_34068188_34068355_34094791_34094928_34103263_34103455_34114416_34114659_34260835_34260910_34261732
ENSMUSG00000038718.16_3	chr2	-	619	1	ISM	ENSMUSG00000038718.16	ENSMUST00000113132.9	2734	8	199962	1	116776	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCCATGTGTGTCTCTG	NA	False	NA	NA	False	AATAAA	-23	NA	34062088	34061469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_34061500_34062100
ENSMUSG00000038718.16_9	chr2	-	2567	8	FSM	ENSMUSG00000038718.16	ENSMUST00000153278.8	1063	8	-83	-1421	35	-3	multi-exon	FALSE	canonical	1	7	junction_6	10.7285619174392	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGCCATGTGTGTCTC	873	False	NA	NA	False	AATAAA	-21	NA	34262015	34061471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34062986_34065876_34065967_34066760_34066874_34068188_34068355_34094791_34094928_34103263_34103455_34260835_34260910_34261732
ENSMUSG00000038722.18_0	chr5	+	825	6	FSM	ENSMUSG00000038722.18	ENSMUST00000162594.8	867	6	36	6	1	1	multi-exon	FALSE	canonical	3	705	junction_1	67.372397908936	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTACATTCTTTCTTTTA	NA	False	NA	14	True	AATAAA	-15	NA	145077207	145084882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145077253_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUSG00000038722.18_6	chr5	+	742	6	FSM	ENSMUSG00000038722.18	ENSMUST00000159018.8	741	6	-4	3	-4	0	multi-exon	FALSE	canonical	3	42	junction_2	311.754133894003	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCTACATTCTTTCTTTT	NA	False	NA	13	True	AATAAA	-14	NA	145077213	145084881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145077253_145078114_145078171_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUSG00000038722.18_8	chr5	+	909	6	FSM	ENSMUSG00000038722.18	ENSMUST00000160075.2	928	6	20	-1	20	1	multi-exon	FALSE	canonical	3	107	junction_1	298.93035978301	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTACATTCTTTCTTTTA	NA	False	NA	14	True	AATAAA	-15	NA	145077244	145084882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145077374_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUSG00000038729.25_0	chr4	+	3409	3	NIC	ENSMUSG00000038729.25	novel	7172	3	NA	NA	-18	-3342	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	3.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCTCTTCATGTTGCAG	-8	True	NA	6	True	TATAAA	-18	NA	57782161	57893640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_57782323_57854561_57857038_57892868
ENSMUSG00000038729.25_1	chr4	+	3587	4	NIC	ENSMUSG00000038729.25	novel	7211	4	NA	NA	-17	-3342	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	3.29983164553722	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCTCTTCATGTTGCAG	-7	True	NA	6	True	TATAAA	-18	NA	57782162	57893640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_57782323_57854561_57857038_57883023_57883203_57892868
ENSMUSG00000038729.25_5	chr4	+	4517	3	FSM	ENSMUSG00000038729.25	ENSMUST00000102903.8	6650	3	4	2129	3	-2129	multi-exon	FALSE	canonical	3	18	junction_2	1	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATTCATTTTTGTTTTT	-2	True	NA	12	True	ATTAAA	-12	NA	57845250	57894853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_57845307_57854561_57857038_57892868
ENSMUSG00000038729.25_6	chr4	+	4698	4	FSM	ENSMUSG00000038729.25	ENSMUST00000107598.9	6830	4	2	2130	2	-2128	multi-exon	FALSE	canonical	3	16	junction_3	1.69967317119759	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCATTTTTGTTTTTA	-3	True	NA	13	True	ATTAAA	-13	NA	57845249	57894854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_57845307_57854561_57857038_57883023_57883203_57892868
ENSMUSG00000038729.25_9	chr4	+	4841	4	NIC	ENSMUSG00000038729.25	novel	7211	4	NA	NA	12	-2121	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	8.33999733546453	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGTTTTTATGTTATT	7801	False	NA	20	True	ATTAAA	-20	NA	57821061	57894861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_57821255_57854561_57857038_57883023_57883203_57892868
ENSMUSG00000038732.16_0	chr13	+	2823	13	FSM	ENSMUSG00000038732.16	ENSMUST00000047311.16	2905	13	57	25	57	-25	multi-exon	FALSE	canonical	1	2	junction_9	4.03026742978125	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAATGATTCCTCATAAA	NA	False	NA	NA	False	AATAAA	-18	NA	30320528	30430675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_30320746_30378518_30378665_30379692_30379771_30386307_30386404_30403618_30403675_30406356_30406412_30408365_30408550_30410255_30410449_30415946_30416051_30419672_30419738_30421945_30422079_30425146_30425299_30429331
ENSMUSG00000038733.15_12	chr1	-	4324	14	FSM	ENSMUSG00000038733.15	ENSMUST00000162963.8	6452	14	-518	2646	23	1219	multi-exon	FALSE	canonical	3	114	junction_11	18.0616957141628	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATATAATTAAGTGGCAA	NA	False	NA	-6	True	AATAAA	-17	NA	181039520	181003442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036615_181036673_181036777_181036878_181038640
ENSMUSG00000038733.15_13	chr1	-	3306	3	NNC	ENSMUSG00000038733.15	novel	7045	14	NA	NA	7124	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAAGTAATTCTCGTTGC	NA	False	NA	-11	True	AATAAA	-11	NA	181004180	181000800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_181001379_181001418_181001680_181001713
ENSMUSG00000038733.15_27	chr1	-	4379	14	FSM	ENSMUSG00000038733.15	ENSMUST00000162819.9	7045	14	11	2655	11	1214	multi-exon	FALSE	canonical	3	48	junction_11	31.9711408328487	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACTGTATATAATTAAGT	NA	False	NA	-11	True	AATAAA	-12	NA	181039532	181003447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036567_181036673_181036777_181036878_181038640
ENSMUSG00000038733.15_3	chr1	-	3543	1	ISM	ENSMUSG00000038733.15	ENSMUST00000162819.9	7045	14	35204	4	6965	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAATTCTCGTTGCGTTC	NA	False	NA	-7	True	AATAAA	-15	NA	181004339	181000796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_181000800_181004300
ENSMUSG00000038733.15_63	chr1	-	2603	14	NIC	ENSMUSG00000038733.15	novel	751	6	NA	NA	26	-6	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	34.0406996222056	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAATGACTTACAGATT	NA	False	NA	NA	False	AGTAAA	-15	NA	181039517	181007977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_181008214_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036615_181036673_181036777_181036878_181038640
ENSMUSG00000038733.15_69	chr1	-	2677	14	NIC	ENSMUSG00000038733.15	novel	751	6	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	42.1032824199319	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAATGACTTACAGATTG	NA	False	NA	NA	False	AGTAAA	-16	NA	181039542	181007976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_181008214_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036567_181036673_181036777_181036878_181038640
ENSMUSG00000038736.11_0	chr15	-	2979	10	FSM	ENSMUSG00000038736.11	ENSMUST00000038719.8	2600	10	459	-838	6	838	multi-exon	FALSE	canonical	3	194	junction_5	53.0869308043159	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACCTGTAGTGATGTT	NA	False	NA	-11	True	AATAAA	-14	NA	44291244	44238628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263621_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
ENSMUSG00000038736.11_2	chr15	-	2985	10	FSM	ENSMUSG00000038736.11	ENSMUST00000227843.2	5077	10	22	2070	3	838	multi-exon	FALSE	canonical	3	89	junction_5	79.6338844685826	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACCTGTAGTGATGTT	NA	False	NA	-11	True	AATAAA	-14	NA	44291247	44238628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263624_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
ENSMUSG00000038740.10_1	chr2	-	4504	10	FSM	ENSMUSG00000038740.10	ENSMUST00000041555.10	4998	10	485	9	21	-9	multi-exon	FALSE	canonical	3	7	junction_2	24.5990063033268	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCGTTTCCCCAGTTTG	4234	False	NA	-10	True	AATAAA	-11	NA	33777473	33619973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_33623544_33642320_33642381_33645001_33645058_33692756_33692852_33715059_33715183_33717693_33717824_33724548_33724646_33730170_33730279_33764349_33764473_33777331
ENSMUSG00000038740.10_3	chr2	-	224	1	ISM	ENSMUSG00000038740.10	ENSMUST00000041555.10	4998	10	157768	2	58581	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCCCAGTTTGCTGTTAT	NA	False	NA	-3	True	AATAAA	-18	NA	33620190	33619966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_33620000_33620200
ENSMUSG00000038740.10_7	chr2	-	508	3	FSM	ENSMUSG00000038740.10	ENSMUST00000146892.2	520	3	13	-1	13	1	multi-exon	FALSE	canonical	3	76	junction_1	8	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCTGAAGTGTGTTTTG	4226	False	NA	-4	True	AATAAA	-16	NA	33777481	33763624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_33763860_33764349_33764473_33777331
ENSMUSG00000038742.8_0	chr9	-	2198	4	ISM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	1859	3	1859	-3	3prime_fragment	FALSE	canonical	3	97	junction_3	15.9652400197707	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACACTGTGTCTGTCTTCC	NA	False	NA	-8	True	NA	NA	NA	20789164	20785106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687
ENSMUSG00000038742.8_1	chr9	-	1097	5	ISM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	1481	3	1481	-3	3prime_fragment	FALSE	canonical	3	59	junction_4	28.1646942110153	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACACTGTGTCTGTCTTCC	NA	False	NA	-8	True	NA	NA	NA	20789542	20785106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789344
ENSMUSG00000038742.8_2	chr9	-	236	1	ISM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	5683	1	5683	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTGTGTCTGTCTTCCTG	NA	False	NA	-6	True	NA	NA	NA	20785340	20785104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20785100_20785300
ENSMUSG00000038742.8_3	chr9	-	1552	5	NNC	ENSMUSG00000038742.8	novel	1582	6	NA	NA	1788	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	45.3176290200624	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACACTGTGTCTGTCTTCC	NA	False	NA	-8	True	NA	NA	NA	20789235	20785106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20788582
ENSMUSG00000038742.8_4	chr9	-	2247	3	NIC	ENSMUSG00000038742.8	novel	1582	6	NA	NA	1887	-3	intron_retention	FALSE	canonical	3	97	junction_2	19.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACACTGTGTCTGTCTTCC	NA	False	NA	-8	True	NA	NA	NA	20789136	20785106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_20785369_20786461_20786998_20787687
ENSMUSG00000038742.8_5	chr9	-	1000	4	NIC	ENSMUSG00000038742.8	novel	1582	6	NA	NA	1655	-3	intron_retention	FALSE	canonical	3	59	junction_3	31.4360020076062	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACACTGTGTCTGTCTTCC	NA	False	NA	-8	True	NA	NA	NA	20789368	20785106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_20785369_20786461_20786998_20787687_20787866_20789344
ENSMUSG00000038756.14_6	chr11	+	2730	4	ISM	ENSMUSG00000038756.14	ENSMUST00000167258.8	3205	15	19648	0	19215	0	3prime_fragment	FALSE	canonical	1	1	junction_3	3.39934634239519	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATGAGCCTGGTCCACA	9330	False	NA	NA	False	AATAAA	-18	NA	96044259	96056277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96045681_96047298_96047633_96049513_96049785_96055573
ENSMUSG00000038756.14_7	chr11	+	278	1	ISM	ENSMUSG00000038756.14	ENSMUST00000167258.8	3205	15	31388	0	30955	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATGAGCCTGGTCCACA	NA	False	NA	NA	False	AATAAA	-18	NA	96055999	96056277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96056000_96056300
ENSMUSG00000038759.16_0	chr6	+	6216	43	FSM	ENSMUSG00000038759.16	ENSMUST00000043815.16	6412	43	190	6	4	0	multi-exon	FALSE	canonical	2	193	junction_5	62.1117418909309	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAAACAAATGTGTGG	NA	False	NA	NA	False	AATAAA	-10	NA	35154554	35224525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259_35182470_35185015_35185116_35185729_35185868_35187762_35187953_35189661_35189783_35191252_35191335_35191580_35191746_35192008_35192134_35196619_35196735_35200447_35200598_35201080_35201153_35201456_35201615_35202118_35202200_35202724_35202917_35204237_35204506_35204599_35204699_35207438_35207588_35209332_35209525_35210270_35210393_35211612_35211752_35213700_35213828_35215879_35215957_35217943_35218073_35218253_35218384_35220753_35220921_35221631_35221756_35222182_35222312_35222956_35223016_35224195
ENSMUSG00000038759.16_8	chr6	+	2402	15	FSM	ENSMUSG00000038759.16	ENSMUST00000202898.2	2409	15	4	3	4	-3	multi-exon	FALSE	canonical	2	193	junction_5	41.0390555645796	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATTCTGTTATTCCTTCT	NA	False	NA	NA	False	AATAAA	-12	NA	35154554	35182585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259
ENSMUSG00000038762.16_1	chr17	-	3148	23	FSM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	10	3	10	-3	multi-exon	FALSE	canonical	3	801	junction_12	70.1887066803097	1645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCATGTGCCTGTGGGGT	NA	False	NA	-15	True	AATAAA	-15	NA	36280643	36267713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
ENSMUSG00000038762.16_3	chr17	-	3232	22	NIC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	10	-3	intron_retention	FALSE	canonical	3	801	junction_12	69.407338839688	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCATGTGCCTGTGGGGT	NA	False	NA	-15	True	AATAAA	-15	NA	36280643	36267713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
ENSMUSG00000038763.13_0	chr7	+	4956	10	ISM	ENSMUSG00000038763.13	ENSMUST00000107348.2	6369	14	20906	1	-16325	-1	3prime_fragment	FALSE	canonical	0	0	junction_1	7.08676387515643	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCACGGTGTGATGATTA	NA	False	NA	21	True	AATAAA	-33	NA	80728253	80755359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_80728582_80741894_80743933_80744654_80744803_80745149_80745278_80745405_80745442_80748494_80748770_80749918_80750008_80750655_80750880_80753092_80753142_80753718
ENSMUSG00000038763.13_1	chr7	+	3291	9	ISM	ENSMUSG00000038763.13	ENSMUST00000107348.2	6369	14	35884	1	-1347	-1	3prime_fragment	FALSE	canonical	3	11	junction_1	5.1234753829798	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCACGGTGTGATGATTA	NA	False	NA	21	True	AATAAA	-33	NA	80743231	80755359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_80743933_80744654_80744803_80745149_80745278_80745405_80745442_80748494_80748770_80749918_80750008_80750655_80750880_80753092_80753142_80753718
ENSMUSG00000038763.13_4	chr7	+	2652	8	ISM	ENSMUSG00000038763.13	ENSMUST00000107348.2	6369	14	37241	5	10	-5	3prime_fragment	FALSE	canonical	3	12	junction_3	5.00611870512435	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTCACGGTGTGATG	NA	False	NA	17	True	AATAAA	-29	NA	80744588	80755355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_80744803_80745149_80745278_80745405_80745442_80748494_80748770_80749918_80750008_80750655_80750880_80753092_80753142_80753718
ENSMUSG00000038763.13_5	chr7	+	3281	4	NIC	ENSMUSG00000038763.13	novel	6369	14	NA	NA	4056	-7	intron_retention	FALSE	canonical	3	13	junction_3	2.94392028877595	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCATGTCACGGTGTGA	NA	False	NA	15	True	AATAAA	-27	NA	80748634	80755353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_80750008_80750655_80750880_80753092_80753142_80753718
ENSMUSG00000038764.15_0	chr4	-	2672	1	ISM	ENSMUSG00000038764.15	ENSMUST00000075637.11	6369	26	108318	7	28535	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTGTTCTTGTCTGTCA	NA	False	NA	-7	True	TATAAA	-17	NA	57193519	57190847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_57190800_57193500
ENSMUSG00000038764.15_14	chr4	-	4272	26	NIC	ENSMUSG00000038764.15	novel	6369	26	NA	NA	-36	-2131	combination_of_known_junctions	FALSE	canonical	2	9	junction_25	11.3804042107475	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTGGTATTTTTAAATA	3	True	NA	-15	True	AATAAA	-15	NA	57300792	57192971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57300592
ENSMUSG00000038764.15_16	chr4	-	3577	19	ISM	ENSMUSG00000038764.15	ENSMUST00000075637.11	6369	26	51819	2133	-27964	-2133	3prime_fragment	FALSE	canonical	3	38	junction_6	8.33036984343403	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAGGTGGTATTTTTAAA	NA	False	NA	-17	True	AATAAA	-13	NA	57250018	57192973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907
ENSMUSG00000038764.15_25	chr4	-	4209	26	FSM	ENSMUSG00000038764.15	ENSMUST00000075637.11	6369	26	29	2131	29	-2131	multi-exon	FALSE	canonical	1	3	junction_25	12.2497999983673	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTGGTATTTTTAAATA	1	True	NA	-15	True	AATAAA	-15	NA	57301808	57192971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57301671
ENSMUSG00000038764.15_5	chr4	-	4149	26	NIC	ENSMUSG00000038764.15	novel	6369	26	NA	NA	18	-2131	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	7.95044652834041	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTGGTATTTTTAAATA	-16	True	NA	-15	True	AATAAA	-15	NA	57300357	57192971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57300280
ENSMUSG00000038765.15_0	chr2	-	5230	8	FSM	ENSMUSG00000038765.15	ENSMUST00000176067.2	1420	8	-455	-3355	-327	-5	multi-exon	TRUE	canonical	0	0	junction_1	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTGTGGCCCCTCCT	NA	False	NA	NA	False	AATAAA	-11	NA	33530947	33450981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_33454806_33455072_33455238_33456682_33456750_33456896_33456975_33457159_33457342_33459061_33459295_33529500_33529688_33530453
ENSMUSG00000038765.15_1	chr2	-	3548	1	ISM	ENSMUSG00000038765.15	ENSMUST00000041730.12	4887	8	76091	5	67766	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTGTGGCCCCTCCT	NA	False	NA	NA	False	AATAAA	-11	NA	33454529	33450981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_33451000_33454500
ENSMUSG00000038766.17_0	chr3	-	3405	1	ISM	ENSMUSG00000038766.17	ENSMUST00000107209.8	8357	9	32532	7	6721	0	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATGTCAGTATTGTT	NA	False	NA	-29	True	AATAAA	-11	NA	95092488	95089083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95089100_95092500
ENSMUSG00000038766.17_1	chr3	-	7867	5	ISM	ENSMUSG00000038766.17	ENSMUST00000098873.11	8272	8	5011	0	5011	0	3prime_fragment	FALSE	canonical	3	14	junction_4	4.81534007106456	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATGTCAGTATTGTT	NA	False	NA	-29	True	AATAAA	-11	NA	95111237	95089083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95096287_95096464_95096596_95097863_95098050_95107451_95107603_95111041
ENSMUSG00000038766.17_2	chr3	-	8491	10	FSM	ENSMUSG00000038766.17	ENSMUST00000136139.8	8661	10	156	14	-6	-7	multi-exon	FALSE	canonical	2	6	junction_7	7.40036702459854	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCTTAATAAAATGTCAG	8932	False	NA	-36	True	AATAAA	-4	NA	95125071	95089090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95096287_95096464_95096596_95097863_95098050_95107451_95107603_95111041_95111237_95111951_95112120_95113773_95113914_95116150_95116248_95123524_95123580_95124899
ENSMUSG00000038766.17_5	chr3	-	8523	9	FSM	ENSMUSG00000038766.17	ENSMUST00000107209.8	8357	9	-173	7	34	0	multi-exon	FALSE	canonical	3	10	junction_7	6.12244844812923	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATGTCAGTATTGTT	8810	False	NA	-29	True	AATAAA	-11	NA	95125193	95089083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95096287_95096464_95096596_95097863_95098050_95107451_95107603_95111041_95111237_95111951_95112120_95113773_95113914_95123524_95123580_95124899
ENSMUSG00000038766.17_8	chr3	-	8336	8	NIC	ENSMUSG00000038766.17	novel	8661	10	NA	NA	-3	-7	combination_of_known_splicesites	FALSE	canonical	3	9	junction_7	6.73704349860091	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCTTAATAAAATGTCAG	8935	False	NA	-36	True	AATAAA	-4	NA	95125068	95089090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_95096287_95096464_95096596_95097863_95098050_95107451_95107603_95111041_95111237_95111951_95112120_95113773_95113914_95124899
ENSMUSG00000038773.12_11	chr18	+	6089	23	NIC	ENSMUSG00000038773.12	novel	6363	24	NA	NA	-6	320	combination_of_known_junctions	FALSE	canonical	3	21	junction_6	70.7726104979477	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCTAACAAATCTCT	NA	False	NA	135	True	NA	NA	NA	34910093	34972033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_34910379_34926056_34926225_34927502_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34941293_34942543_34943311_34943514_34945424_34945640_34946461_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
ENSMUSG00000038773.12_2	chr18	+	2051	7	FSM	ENSMUSG00000038773.12	ENSMUST00000224715.2	2032	7	-25	6	-6	-6	multi-exon	FALSE	canonical	3	241	junction_6	14.229273425661	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAGTGTTAAGTCGTAT	NA	False	NA	21	True	AATAAA	-30	NA	34910093	34937680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_34910379_34926056_34926225_34927502_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34936502
ENSMUSG00000038773.12_3	chr18	+	6690	24	FSM	ENSMUSG00000038773.12	ENSMUST00000043775.9	6363	24	-7	-320	-7	320	multi-exon	FALSE	canonical	3	208	junction_7	44.6966672190611	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCTAACAAATCTCT	NA	False	NA	135	True	NA	NA	NA	34910092	34972033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_34910379_34926056_34926225_34927502_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34936502_34937103_34941293_34942543_34943311_34943514_34945424_34945640_34946461_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
ENSMUSG00000038773.12_48	chr18	+	5549	18	ISM	ENSMUSG00000038773.12	ENSMUST00000043775.9	6363	24	26670	-320	6822	320	3prime_fragment	FALSE	canonical	3	208	junction_1	47.9215044446154	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCTAACAAATCTCT	4469	False	NA	135	True	NA	NA	NA	34936769	34972033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_34937103_34941293_34942543_34943311_34943514_34945424_34945640_34946461_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
ENSMUSG00000038773.12_52	chr18	+	4724	16	ISM	ENSMUSG00000038773.12	ENSMUST00000043775.9	6363	24	32455	-320	-4055	320	3prime_fragment	FALSE	canonical	3	247	junction_3	41.8422434070322	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCTAACAAATCTCT	NA	False	NA	135	True	NA	NA	NA	34942554	34972033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_34943514_34945424_34945640_34946461_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
ENSMUSG00000038773.12_54	chr18	+	4599	17	ISM	ENSMUSG00000038773.12	ENSMUST00000043775.9	6363	24	31811	-320	-4699	320	3prime_fragment	FALSE	canonical	3	247	junction_4	42.4527310664461	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCTAACAAATCTCT	9610	False	NA	135	True	NA	NA	NA	34941910	34972033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_34942543_34943311_34943514_34945424_34945640_34946461_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
ENSMUSG00000038773.12_61	chr18	+	3423	14	ISM	ENSMUSG00000038773.12	ENSMUST00000043775.9	6363	24	36419	-250	-91	250	3prime_fragment	FALSE	canonical	3	247	junction_1	39.2574569858273	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTTTTAATTTCACTTT	NA	False	NA	65	True	AATAAA	-16	NA	34946518	34971963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
ENSMUSG00000038773.12_65	chr18	+	3054	11	ISM	ENSMUSG00000038773.12	ENSMUST00000043775.9	6363	24	46492	-320	-2297	320	3prime_fragment	FALSE	canonical	3	284	junction_2	29.4964404632152	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCTAACAAATCTCT	1919	False	NA	135	True	NA	NA	NA	34956591	34972033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
ENSMUSG00000038774.10_0	chr10	+	7449	42	FSM	ENSMUSG00000038774.10	ENSMUST00000035606.10	7760	42	27	284	27	-284	multi-exon	FALSE	canonical	3	60	junction_25	18.281297269701	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAAGCTACTCTTTTTTT	NA	False	NA	16	True	AATAAA	-21	NA	50468791	50727297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_50468994_50480846_50480979_50484015_50484167_50493807_50494368_50514003_50514125_50518618_50518827_50521038_50521181_50521758_50521885_50525204_50525406_50525888_50526030_50526642_50526808_50535013_50535191_50536750_50536823_50566210_50566346_50576035_50576228_50576527_50576753_50583758_50583879_50586975_50587141_50589271_50589359_50590361_50590539_50592580_50592807_50594387_50594543_50596707_50596807_50597868_50598038_50604185_50604407_50606007_50606094_50607708_50607876_50608517_50608664_50608782_50608904_50611305_50611449_50624901_50625040_50625130_50625252_50626548_50626682_50630092_50630219_50643186_50643299_50643468_50643604_50699731_50699957_50716393_50716546_50718238_50718387_50721626_50721837_50725566_50725743_50726556
ENSMUSG00000038774.10_23	chr10	+	5571	30	NNC	ENSMUSG00000038774.10	novel	529	3	NA	NA	30027	-284	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	25.7895996144931	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAAGCTACTCTTTTTTT	NA	False	NA	16	True	AATAAA	-21	NA	50555177	50727297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_50555698_50566210_50566346_50576035_50576228_50576527_50576753_50583758_50583879_50586975_50587141_50589271_50589359_50590361_50590539_50592580_50592807_50594387_50594543_50596707_50596807_50597868_50598038_50604185_50604407_50606007_50606094_50607708_50607876_50608517_50608664_50608782_50608904_50611305_50611449_50624901_50625040_50625130_50625252_50626548_50626682_50630092_50630219_50643186_50643299_50643468_50643604_50699731_50699957_50716393_50716546_50718238_50718387_50721626_50721837_50725566_50725743_50726556
ENSMUSG00000038774.10_4	chr10	+	8318	4	ISM	ENSMUSG00000038774.10	ENSMUST00000035606.10	7760	42	15	225953	15	6596	5prime_fragment	FALSE	canonical	3	92	junction_3	4.71404520791032	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGTTTCAAAGTTTAT	NA	False	NA	NA	False	AATAAA	-10	NA	50468779	50501628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_50468994_50480846_50480979_50484015_50484167_50493807
ENSMUSG00000038775.15_0	chr9	+	2712	20	FSM	ENSMUSG00000038775.15	ENSMUST00000051386.13	2909	20	3	194	3	-1	multi-exon	TRUE	canonical	2	4	junction_1	8.09945109456443	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGGTGTGGCACGTGTGC	4710	False	NA	2	True	AATAAA	-15	NA	118881848	118900393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_118881897_118886850_118886923_118887072_118887148_118887378_118887585_118889412_118889522_118890544_118890656_118890962_118891163_118891509_118891589_118891673_118891773_118892315_118892452_118892669_118892771_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118898950_118899137_118899345_118899418_118899624_118899883_118900201
ENSMUSG00000038775.15_11	chr9	+	2768	20	NIC	ENSMUSG00000038775.15	novel	360	4	NA	NA	-7	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	8.42532786213614	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGGTGTGGCACGTGTGC	4787	False	NA	2	True	AATAAA	-15	NA	118881925	118900393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_118882030_118886850_118886923_118887072_118887148_118887378_118887585_118889412_118889522_118890544_118890656_118890962_118891163_118891509_118891589_118891673_118891773_118892315_118892452_118892669_118892771_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118898950_118899137_118899345_118899418_118899624_118899883_118900201
ENSMUSG00000038775.15_23	chr9	+	1597	10	NIC	ENSMUSG00000038775.15	novel	1645	11	NA	NA	-1	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	5.59982363037962	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGGTGTGGCACGTGTGC	NA	False	NA	2	True	AATAAA	-15	NA	118892548	118900393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_118892670_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118898950_118899137_118899345_118899418_118899624_118899883_118900201
ENSMUSG00000038776.14_0	chr1	-	1689	9	FSM	ENSMUSG00000038776.14	ENSMUST00000036928.12	1741	9	48	4	48	-4	multi-exon	FALSE	canonical	3	106	junction_5	19.7214984217731	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTGTGTGGGCCAGATA	5776	False	NA	-7	True	GATAAA	-14	NA	180845086	180817122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_180817546_180817957_180818084_180819497_180819607_180821443_180821653_180822192_180822323_180823513_180823742_180827287_180827469_180829363_180829552_180844991
ENSMUSG00000038776.14_1	chr1	-	4046	7	NIC	ENSMUSG00000038776.14	novel	1741	9	NA	NA	68	-4	intron_retention	FALSE	canonical	3	106	junction_3	19.4543625498813	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTGTGTGGGCCAGATA	5796	False	NA	-7	True	GATAAA	-14	NA	180845066	180817122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_180817546_180817957_180818084_180819497_180822323_180823513_180823742_180827287_180827469_180829363_180829552_180844991
ENSMUSG00000038776.14_2	chr1	-	2209	8	NIC	ENSMUSG00000038776.14	novel	1741	9	NA	NA	68	-4	intron_retention	FALSE	canonical	3	106	junction_4	18.1017532130939	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTGTGTGGGCCAGATA	5796	False	NA	-7	True	GATAAA	-14	NA	180845066	180817122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_180817546_180817957_180818084_180819497_180819607_180821443_180822323_180823513_180823742_180827287_180827469_180829363_180829552_180844991
ENSMUSG00000038777.20_1	chr3	+	3994	20	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	2	12	junction_2	28.2846629936582	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCACATCAGCAAGTCTT	NA	False	NA	14	True	AATAAA	-23	NA	95067804	95081330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95068024_95069925_95069975_95070437_95070583_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
ENSMUSG00000038777.20_11	chr3	+	4087	21	NIC	ENSMUSG00000038777.20	novel	4029	21	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	2	12	junction_2	29.5425117415564	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATTTCACATCAGCAAGT	NA	False	NA	11	True	AATAAA	-20	NA	95067804	95081327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95068024_95069925_95069975_95070437_95070583_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079101_95079198_95079565
ENSMUSG00000038777.20_13	chr3	+	3842	19	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	1	-11	combination_of_known_junctions	FALSE	canonical	3	19	junction_2	24.8891989067994	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGAATTTCACATCAGCA	NA	False	NA	8	True	AATAAA	-17	NA	95067805	95081324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95068024_95069925_95069975_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
ENSMUSG00000038777.20_15	chr3	+	3930	19	NIC	ENSMUSG00000038777.20	novel	4029	21	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	25.7440512126492	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATCAGCAAGTCTTGTC	NA	False	NA	17	True	AATAAA	-26	NA	95067763	95081333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95068014_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079101_95079198_95079565
ENSMUSG00000038777.20_18	chr3	+	3937	20	NIC	ENSMUSG00000038777.20	novel	4029	21	NA	NA	1	-12	combination_of_known_junctions	TRUE	canonical	3	19	junction_2	26.8983929948681	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGAATTTCACATCAGC	NA	False	NA	7	True	AATAAA	-16	NA	95067805	95081323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95068024_95069925_95069975_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079101_95079198_95079565
ENSMUSG00000038777.20_3	chr3	+	3807	18	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	-10	-8	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	22.3489160462629	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATTTCACATCAGCAAGT	NA	False	NA	11	True	AATAAA	-20	NA	95067794	95081327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95068024_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
ENSMUSG00000038777.20_35	chr3	+	3420	18	NIC	ENSMUSG00000038777.20	novel	3562	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	25.8459637241572	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCGCTGCCTGACTTTCC	NA	False	NA	9	True	AATACA	-12	NA	95067804	95080964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95068010_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
ENSMUSG00000038777.20_4	chr3	+	3906	19	NIC	ENSMUSG00000038777.20	novel	4029	21	NA	NA	-16	-11	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	25.1555653710228	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGAATTTCACATCAGCA	NA	False	NA	8	True	AATAAA	-17	NA	95067788	95081324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95068024_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079101_95079198_95079565
ENSMUSG00000038777.20_52	chr3	+	3874	19	NIC	ENSMUSG00000038777.20	novel	3562	19	NA	NA	0	-13	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	28.003967972811	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTTGAATTTCACATCAG	NA	False	NA	6	True	AATAAA	-15	NA	95067804	95081322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95068010_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079101_95079198_95079565
ENSMUSG00000038777.20_74	chr3	+	1377	1	ISM	ENSMUSG00000038777.20	ENSMUST00000090823.8	4029	21	12132	11	1832	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGAATTTCACATCAGCA	NA	False	NA	8	True	AATAAA	-17	NA	95079947	95081324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95079900_95081300
ENSMUSG00000038780.15_0	chr5	-	2722	18	FSM	ENSMUSG00000038780.15	ENSMUST00000100461.7	2725	18	9	-6	1	6	multi-exon	FALSE	canonical	3	98	junction_2	50.6104602342352	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCCTTGGCACGGTGGG	NA	False	NA	-33	True	AATAAA	-22	NA	144902648	144815914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_144816267_144817434_144817511_144818427_144818630_144819316_144819438_144820378_144820517_144821392_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144829970_144830118_144831283_144831369_144833299_144833542_144834792_144834869_144835956_144836023_144836174_144836309_144837986_144838096_144839349_144839389_144902310
ENSMUSG00000038780.15_2	chr5	-	2732	18	FSM	ENSMUSG00000038780.15	ENSMUST00000085684.11	5343	18	8	2603	0	6	multi-exon	FALSE	canonical	3	174	junction_5	38.3797272034027	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCCTTGGCACGGTGGG	NA	False	NA	-33	True	AATAAA	-22	NA	144902649	144815914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_144816267_144817434_144817520_144818427_144818630_144819316_144819438_144820378_144820517_144821392_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144829970_144830118_144831283_144831369_144833299_144833542_144834792_144834869_144835956_144836023_144836174_144836309_144837986_144838096_144839349_144839389_144902310
ENSMUSG00000038780.15_4	chr5	-	2201	1	ISM	ENSMUSG00000038780.15	ENSMUST00000126822.2	4710	6	7775	6	7775	1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCCTTTTTCCTTCCTC	NA	False	NA	-13	True	AATAAA	-14	NA	144815511	144813310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_144813300_144815500
ENSMUSG00000038780.15_5	chr5	-	5193	17	NIC	ENSMUSG00000038780.15	novel	5343	18	NA	NA	-6	-9	combination_of_known_junctions	FALSE	canonical	3	29	junction_9	67.2339374404772	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTTTACATTTTCCTTT	NA	False	NA	-23	True	AATAAA	-4	NA	144902663	144813320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_144816267_144817434_144817520_144818427_144818630_144819316_144819438_144820378_144820517_144821392_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144831283_144831369_144833299_144833542_144834792_144834869_144835956_144836023_144836174_144836309_144837986_144838096_144839349_144839389_144902310
ENSMUSG00000038780.15_9	chr5	-	5187	17	NIC	ENSMUSG00000038780.15	novel	2725	18	NA	NA	-3	-2	combination_of_known_junctions	TRUE	canonical	3	29	junction_9	74.3727678236463	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTTCCTTCCTCTCTT	NA	False	NA	-9	True	AATAAA	-18	NA	144902652	144813306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_144816267_144817434_144817511_144818427_144818630_144819316_144819438_144820378_144820517_144821392_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144831283_144831369_144833299_144833542_144834792_144834869_144835956_144836023_144836174_144836309_144837986_144838096_144839349_144839389_144902310
ENSMUSG00000038781.8_4	chr17	-	1055	6	ISM	ENSMUSG00000038781.8	ENSMUST00000233494.2	1597	12	5324	3	-1769	-3	3prime_fragment	FALSE	canonical	3	21	junction_5	4.54312667664022	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAAAATGCCATGTGGCT	NA	False	NA	-12	True	NA	NA	NA	56307249	56304084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742_56307016_56307086
ENSMUSG00000038781.8_5	chr17	-	800	5	NIC	ENSMUSG00000038781.8	novel	1597	12	NA	NA	-1787	-3	combination_of_known_splicesites	FALSE	canonical	2	6	junction_4	10.8972473588517	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAAAATGCCATGTGGCT	NA	False	NA	-12	True	NA	NA	NA	56307267	56304084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56307086
ENSMUSG00000038781.8_8	chr17	-	938	7	ISM	ENSMUSG00000038781.8	ENSMUST00000043785.8	1509	13	5348	8	-1756	-3	3prime_fragment	FALSE	canonical	3	15	junction_5	6.20931200339905	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAAAATGCCATGTGGCT	NA	False	NA	-12	True	NA	NA	NA	56307236	56304084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742_56306809_56306912_56307016_56307086
ENSMUSG00000038782.8_2	chr7	-	1134	4	NIC	ENSMUSG00000038782.8	novel	1306	5	NA	NA	35	-1	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATTCTCAGTATCTGAC	NA	False	NA	NA	False	AATAAA	-15	NA	43896084	43879357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_43880066_43880749_43880897_43881779_43881981_43896006
ENSMUSG00000038784.14_0	chr6	-	3500	12	FSM	ENSMUSG00000038784.14	ENSMUST00000114993.9	3473	12	-24	-3	2	-2	multi-exon	FALSE	canonical	3	79	junction_2	43.8453329687493	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCCTCGGGTGAGTCTTG	7657	False	NA	-5	True	AATAAA	-17	NA	35110648	34999002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_35000368_35001062_35001276_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ENSMUSG00000038784.14_1	chr6	-	3507	12	NIC	ENSMUSG00000038784.14	novel	3473	12	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	46	junction_5	55.9338452220327	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTCGGGTGAGTCTTGT	7660	False	NA	-4	True	AATAAA	-18	NA	35110645	34999001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_35000368_35001062_35001276_35027996_35028495_35029776_35030027_35033145_35033204_35041823_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ENSMUSG00000038784.14_2	chr6	-	3287	11	FSM	ENSMUSG00000038784.14	ENSMUST00000202143.4	3202	11	-88	3	2	-2	multi-exon	FALSE	canonical	3	23	junction_1	54.0722664588789	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCCTCGGGTGAGTCTTG	7657	False	NA	-5	True	AATAAA	-17	NA	35110648	34999002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_35000368_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ENSMUSG00000038784.14_27	chr6	-	3332	11	FSM	ENSMUSG00000038784.14	ENSMUST00000044163.10	3337	11	7	-2	7	2	multi-exon	FALSE	canonical	3	46	junction_4	56.4779603031129	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGATGCTAATGTTATA	7662	False	NA	NA	False	AATAAA	-13	NA	35110643	35021887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_35023294_35027996_35028495_35029776_35030027_35033145_35033204_35041823_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ENSMUSG00000038784.14_28	chr6	-	3325	11	FSM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	12	-41	3	0	multi-exon	FALSE	canonical	3	71	junction_1	41.7378724901018	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGATGATGCTAATGTTA	7658	False	NA	NA	False	AATAAA	-11	NA	35110647	35021889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_35023294_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ENSMUSG00000038784.14_8	chr6	-	3298	11	FSM	ENSMUSG00000038784.14	ENSMUST00000114989.9	3279	11	-20	1	1	-1	multi-exon	FALSE	canonical	3	23	junction_1	65.3360543651053	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTCGGGTGAGTCTTGT	7656	False	NA	-4	True	AATAAA	-18	NA	35110649	34999001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_35000368_35027996_35028495_35029776_35030027_35033145_35033204_35041823_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
ENSMUSG00000038793.9_1	chr1	+	1601	4	FSM	ENSMUSG00000038793.9	ENSMUST00000037361.9	1620	4	19	0	19	0	multi-exon	FALSE	canonical	3	187	junction_2	33.0790299468141	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGTTTCCTTATT	NA	False	NA	8	True	AATAAA	-17	NA	180762605	180765965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180762925_180764111_180764359_180764573_180764820_180765176
ENSMUSG00000038793.9_2	chr1	+	1817	3	NIC	ENSMUSG00000038793.9	novel	1620	4	NA	NA	18	0	intron_retention	FALSE	canonical	3	245	junction_1	10	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGTTTCCTTATT	NA	False	NA	8	True	AATAAA	-17	NA	180762604	180765965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_180762925_180764111_180764820_180765176
ENSMUSG00000038793.9_7	chr1	+	590	1	ISM	ENSMUSG00000038793.9	ENSMUST00000037361.9	1620	4	2788	1	939	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTTTTTGTTTCCTTAT	NA	False	NA	7	True	AATAAA	-16	NA	180765374	180765964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_180765400_180766000
ENSMUSG00000038797.14_0	chr7	+	2227	3	FSM	ENSMUSG00000038797.14	ENSMUST00000147125.2	1582	3	-22	-623	11	-26	multi-exon	FALSE	canonical	2	3	junction_1	2.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACTCTTTGTGAGTTTT	2899	False	NA	NA	False	TTTAAA	-16	NA	80510678	80526259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_80510826_80512915_80513420_80524683
ENSMUSG00000038797.14_3	chr7	+	1979	2	FSM	ENSMUSG00000038797.14	ENSMUST00000155128.3	939	2	376	-1416	376	-23	multi-exon	FALSE	canonical	3	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTTTGTGAGTTTTTGC	5240	False	NA	NA	False	TTTAAA	-19	NA	80513019	80526262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_80513420_80524683
ENSMUSG00000038803.8_0	chr5	-	437	3	FSM	ENSMUSG00000038803.8	ENSMUST00000132253.5	1144	3	68	639	5	-6	multi-exon	FALSE	canonical	3	823	junction_2	132.5	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATATATTTTTTTGTGGT	NA	False	NA	-11	True	NA	NA	NA	31065064	31063867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31064111_31064742_31064881_31065008
ENSMUSG00000038803.8_1	chr5	-	553	2	FSM	ENSMUSG00000038803.8	ENSMUST00000132034.5	576	2	17	6	17	-6	multi-exon	FALSE	canonical	3	1088	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATATATTTTTTTGTGGT	NA	False	NA	-11	True	NA	NA	NA	31065052	31063867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31064111_31064742
ENSMUSG00000038806.8_0	chr1	+	3185	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	21	7	21	-7	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	1018	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCAATTGTTTTGGAGTT	NA	False	NA	15	True	AATAAA	-15	NA	180678712	180695671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
ENSMUSG00000038807.20_0	chr11	-	2639	1	ISM	ENSMUSG00000038807.20	ENSMUST00000102521.9	6565	25	204064	128	21903	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGAGTTCACATTTCTTG	NA	False	NA	-3	True	AATAAA	-18	NA	74276948	74274309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_74274300_74276900
ENSMUSG00000038807.20_1	chr11	-	6358	24	NIC	ENSMUSG00000038807.20	novel	6565	25	NA	NA	168	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_7	5.74768795466461	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGAGTTCACATTTCTTG	NA	False	NA	-3	True	AATAAA	-18	NA	74413409	74274309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_74278338_74279144_74279184_74279608_74279686_74283045_74283173_74283870_74283989_74284194_74284309_74286604_74286724_74288182_74288321_74296548_74296684_74298136_74298224_74298713_74298786_74303122_74303279_74305216_74305347_74307057_74307159_74313255_74313340_74316007_74316062_74316737_74316817_74326526_74326631_74327749_74327963_74328256_74328290_74329089_74329135_74332575_74332612_74375712_74375798_74413225
ENSMUSG00000038807.20_10	chr11	-	6515	26	FSM	ENSMUSG00000038807.20	ENSMUST00000238457.2	6389	26	-126	0	-126	0	multi-exon	FALSE	canonical	0	0	junction_23	10.7274600908137	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGAGTTCACATTTCTT	NA	False	NA	-4	True	AATAAA	-17	NA	74501867	74274310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_74278338_74279144_74279184_74279608_74279686_74283045_74283173_74283870_74283989_74284194_74284309_74286604_74286724_74288182_74288321_74296548_74296684_74298136_74298224_74298713_74298786_74303122_74303279_74305216_74305347_74307057_74307159_74313255_74313340_74316007_74316062_74316737_74316817_74326526_74326631_74327749_74327963_74328256_74328290_74329089_74329135_74332575_74332612_74375712_74375798_74458041_74458078_74487707_74487825_74501678
ENSMUSG00000038807.20_2	chr11	-	6364	24	NIC	ENSMUSG00000038807.20	novel	6389	26	NA	NA	156	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	8.40784582729587	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGAGTTCACATTTCTT	NA	False	NA	-4	True	AATAAA	-17	NA	74413421	74274310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_74278338_74279144_74279184_74279608_74279686_74283045_74283168_74283870_74283989_74284194_74284309_74286604_74286724_74288182_74288321_74296548_74296684_74298136_74298224_74298713_74298786_74303122_74303279_74305216_74305347_74307057_74307159_74313255_74313340_74316007_74316062_74316737_74316817_74326526_74326631_74327749_74327963_74328256_74328290_74329089_74329135_74332575_74332612_74375712_74375798_74413225
ENSMUSG00000038807.20_22	chr11	-	5068	12	ISM	ENSMUSG00000038807.20	ENSMUST00000102521.9	6565	25	177875	129	-4286	0	3prime_fragment	FALSE	canonical	3	15	junction_7	6.81515084145139	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGAGTTCACATTTCTT	NA	False	NA	-4	True	AATAAA	-17	NA	74303137	74274310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_74278338_74279144_74279184_74279608_74279686_74283045_74283173_74283870_74283989_74284194_74284309_74286604_74286724_74288182_74288321_74296548_74296684_74298136_74298224_74298713_74298786_74303122
ENSMUSG00000038807.20_3	chr11	-	5885	19	ISM	ENSMUSG00000038807.20	ENSMUST00000102521.9	6565	25	153140	128	-29021	0	3prime_fragment	FALSE	canonical	3	15	junction_7	5.63197441422359	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGAGTTCACATTTCTTG	NA	False	NA	-3	True	AATAAA	-18	NA	74327872	74274309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_74278338_74279144_74279184_74279608_74279686_74283045_74283173_74283870_74283989_74284194_74284309_74286604_74286724_74288182_74288321_74296548_74296684_74298136_74298224_74298713_74298786_74303122_74303279_74305216_74305347_74307057_74307159_74313255_74313340_74316007_74316062_74316737_74316817_74326526_74326631_74327749
ENSMUSG00000038807.20_5	chr11	-	6461	25	FSM	ENSMUSG00000038807.20	ENSMUST00000102521.9	6565	25	-25	129	-25	0	multi-exon	FALSE	canonical	0	0	junction_23	9.95606668764773	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGAGTTCACATTTCTT	NA	False	NA	-4	True	AATAAA	-17	NA	74481037	74274310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_74278338_74279144_74279184_74279608_74279686_74283045_74283173_74283870_74283989_74284194_74284309_74286604_74286724_74288182_74288321_74296548_74296684_74298136_74298224_74298713_74298786_74303122_74303279_74305216_74305347_74307057_74307159_74313255_74313340_74316007_74316062_74316737_74316817_74326526_74326631_74327749_74327963_74328256_74328290_74329089_74329135_74332575_74332612_74375712_74375798_74458041_74458078_74480785
ENSMUSG00000038811.14_0	chr11	+	545	4	FSM	ENSMUSG00000038811.14	ENSMUST00000107714.9	558	4	-1	14	-1	-14	multi-exon	FALSE	canonical	2	7	junction_2	4.54606056566195	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAGCAACAACCTCGG	NA	False	NA	NA	False	AATAAA	-8	NA	95733119	95736546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95733253_95734637_95734722_95735876_95735967_95736308
ENSMUSG00000038812.17_0	chr19	+	574	4	FSM	ENSMUSG00000038812.17	ENSMUST00000116551.10	985	4	401	10	-5	-10	multi-exon	TRUE	canonical	3	803	junction_1	23.6971634495683	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAAAAGCGGTTTCTC	9715	False	NA	6	True	ATTAAA	-6	NA	6887515	6888386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6887631_6887730_6887833_6887951_6888042_6888119
ENSMUSG00000038812.17_3	chr19	+	858	1	NIC	ENSMUSG00000038812.17	novel	957	5	NA	NA	-3	-10	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAAAAGCGGTTTCTC	9728	False	NA	6	True	ATTAAA	-6	NA	6887528	6888386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6887500_6888400
ENSMUSG00000038816.15_1	chr4	-	3361	18	NIC	ENSMUSG00000038816.15	novel	3664	19	NA	NA	22	-8	combination_of_known_junctions	FALSE	canonical	3	86	junction_17	49.5178133688317	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGAACTCATACCGACT	6	True	NA	-14	True	AATAAA	-13	NA	56846070	56810942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
ENSMUSG00000038816.15_3	chr4	-	3659	19	FSM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	-3	8	-3	-8	multi-exon	FALSE	canonical	3	197	junction_15	25.8110417562564	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGAACTCATACCGACT	-20	True	NA	-14	True	AATAAA	-13	NA	56865191	56810942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
ENSMUSG00000038816.15_37	chr4	-	1936	11	ISM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	-6	15071	-6	-3	5prime_fragment	FALSE	canonical	3	197	junction_7	32.0661815625122	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAAATTGGATTTCCTAC	-23	True	NA	NA	False	AATAAA	-15	NA	56865194	56826005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
ENSMUSG00000038816.15_6	chr4	-	1799	5	FSM	ENSMUSG00000038816.15	ENSMUST00000131231.2	654	5	52	-1197	52	-8	multi-exon	FALSE	canonical	3	19	junction_4	112.62548557054	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGAACTCATACCGACT	NA	False	NA	-14	True	AATAAA	-13	NA	56814267	56810942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56814169
ENSMUSG00000038822.16_0	chr10	+	3571	24	FSM	ENSMUSG00000038822.16	ENSMUST00000037044.13	3785	24	35	179	35	7	multi-exon	FALSE	canonical	3	100	junction_19	16.6879511224538	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTCTGTGCTCAGTTT	1813	False	NA	11	True	ATTAAA	-24	NA	45453959	45588262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_45454247_45464475_45464531_45465576_45465667_45466363_45466469_45481604_45481681_45494593_45494726_45514416_45514500_45524686_45524784_45524949_45525052_45525976_45526084_45528683_45528835_45546441_45546777_45547227_45547297_45547534_45547623_45548423_45548536_45548634_45548733_45548869_45548958_45552476_45552627_45553162_45553360_45562697_45562830_45576672_45576772_45577049_45577121_45585976_45586091_45587529
ENSMUSG00000038822.16_10	chr10	+	3583	23	NIC	ENSMUSG00000038822.16	novel	3785	24	NA	NA	40	-5	combination_of_known_splicesites	FALSE	canonical	3	11	junction_6	29.462821508465	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTATATTTCTTTATTTG	1818	False	NA	3	True	AATAAA	-15	NA	45453964	45588362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_45454247_45464475_45464531_45465576_45465667_45466363_45466469_45481604_45481681_45494593_45494726_45524686_45524784_45524949_45525052_45525976_45526084_45528683_45528835_45546441_45546777_45547227_45547297_45547534_45547623_45548423_45548536_45548634_45548733_45548869_45548958_45552476_45552627_45553162_45553360_45562697_45562830_45576672_45576772_45577049_45577121_45585976_45586091_45587529
ENSMUSG00000038822.16_3	chr10	+	3433	23	NIC	ENSMUSG00000038822.16	novel	3785	24	NA	NA	36	2	combination_of_known_junctions	FALSE	canonical	3	10	junction_19	29.0870736107926	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCATCTTTCTGTGCTC	1814	False	NA	6	True	ATTAAA	-19	NA	45453960	45588257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_45454247_45464475_45464531_45465576_45465667_45466363_45466469_45481604_45481681_45494593_45494726_45514416_45514500_45524686_45524784_45524949_45525052_45525976_45526084_45528683_45528835_45546441_45546777_45547227_45547297_45547534_45547623_45548423_45548536_45548634_45548733_45548869_45548958_45552476_45552627_45553162_45553360_45576672_45576772_45577049_45577121_45585976_45586091_45587529
ENSMUSG00000038822.16_4	chr10	+	3485	23	NIC	ENSMUSG00000038822.16	novel	3785	24	NA	NA	17	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	29.5710728095454	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGAATTATTTGCATCTT	1795	False	NA	-3	True	ATTAAA	-10	NA	45453941	45588248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_45454247_45464475_45464531_45466363_45466469_45481604_45481681_45494593_45494726_45514416_45514500_45524686_45524784_45524949_45525052_45525976_45526084_45528683_45528835_45546441_45546777_45547227_45547297_45547534_45547623_45548423_45548536_45548634_45548733_45548869_45548958_45552476_45552627_45553162_45553360_45562697_45562830_45576672_45576772_45577049_45577121_45585976_45586091_45587529
ENSMUSG00000038827.12_0	chr4	+	4242	6	FSM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	28	5	25	-5	multi-exon	FALSE	canonical	3	125	junction_2	10.8369737473153	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAAGGTGGCTTTCTGTGT	28	False	NA	8	True	AATAAA	-17	NA	56802376	56809596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_56802727_56803595_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
ENSMUSG00000038827.12_1	chr4	+	4125	6	FSM	ENSMUSG00000038827.12	ENSMUST00000131520.8	4360	6	224	11	-42	-11	multi-exon	FALSE	canonical	3	7	junction_1	52.8189359983709	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTTAAAAGGTGGCTTT	-16	True	NA	2	True	AATAAA	-11	NA	56802575	56809590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_56802727_56803507_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
ENSMUSG00000038827.12_3	chr4	+	2437	1	ISM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	4812	4	4543	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGTGGCTTTCTGTGTA	4569	False	NA	9	True	AATAAA	-18	NA	56807160	56809597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_56807200_56809600
ENSMUSG00000038827.12_6	chr4	+	4329	7	NIC	ENSMUSG00000038827.12	novel	522	6	NA	NA	13	-14	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	64.5204532601011	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGACTTTTTAAAAGGTGGC	16	False	NA	-1	True	AATAAA	-8	NA	56802364	56809587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_56802727_56803595_56803648_56804153_56804284_56805313_56805398_56805681_56805759_56805877_56805948_56806033
ENSMUSG00000038828.14_1	chr5	+	2766	17	FSM	ENSMUSG00000038828.14	ENSMUST00000201203.4	6110	17	1625	1719	2	-2	multi-exon	FALSE	canonical	3	358	junction_2	22.5422346662881	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTAGCTTTCCTGTCT	NA	False	NA	12	True	AATAAA	-12	NA	31026980	31034805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029064_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
ENSMUSG00000038828.14_7	chr5	+	2918	16	NIC	ENSMUSG00000038828.14	novel	6110	17	NA	NA	1	-1	intron_retention	TRUE	canonical	3	358	junction_2	22.4453905191145	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTAGCTTTCCTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	31026979	31034806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31027163_31027932_31028133_31028763_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
ENSMUSG00000038831.17_0	chr2	-	1555	1	ISM	ENSMUSG00000038831.17	ENSMUST00000131298.7	6035	18	236450	8	23191	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAATATCGTTCTATTTA	NA	False	NA	NA	False	ATTAAA	-11	NA	33024991	33023436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_33023400_33025000
ENSMUSG00000038831.17_1	chr2	-	6276	20	FSM	ENSMUSG00000038831.17	ENSMUST00000091039.5	2738	20	10	-3548	2	-4	multi-exon	FALSE	canonical	2	6	junction_8	10.7559170084433	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAATATCGTTCTATTTA	NA	False	NA	NA	False	ATTAAA	-11	NA	33261480	33023436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036666_33045299_33045352_33047783_33047942_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
ENSMUSG00000038831.17_13	chr2	-	2722	20	NIC	ENSMUSG00000038831.17	novel	2738	20	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	11.3205620290576	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCGTGTCTTGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	33261477	33026984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036663_33045299_33045352_33047783_33047942_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
ENSMUSG00000038831.17_18	chr2	-	5992	17	NIC	ENSMUSG00000038831.17	novel	6035	18	NA	NA	-16	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	10.0076142886304	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAATATCGTTCTATTTA	NA	False	NA	NA	False	ATTAAA	-11	NA	33261457	33023436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036666_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33226524_33226633_33230724_33230846_33261281
ENSMUSG00000038831.17_2	chr2	-	6069	18	NIC	ENSMUSG00000038831.17	novel	6035	18	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	2	3	junction_6	9.43122987132713	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGAATATCGTTCTATT	NA	False	NA	NA	False	ATTAAA	-9	NA	33261488	33023438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036663_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
ENSMUSG00000038831.17_20	chr2	-	5861	16	NIC	ENSMUSG00000038831.17	novel	6035	18	NA	NA	-17	-4	combination_of_known_splicesites	FALSE	canonical	2	2	junction_11	10.5164421529125	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAATATCGTTCTATTTA	NA	False	NA	NA	False	ATTAAA	-11	NA	33261458	33023436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036666_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
ENSMUSG00000038831.17_3	chr2	-	6063	18	FSM	ENSMUSG00000038831.17	ENSMUST00000131298.7	6035	18	-36	8	5	-4	multi-exon	FALSE	canonical	3	17	junction_6	7.39259893617541	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAATATCGTTCTATTTA	NA	False	NA	NA	False	ATTAAA	-11	NA	33261477	33023436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036666_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
ENSMUSG00000038836.16_0	chr6	+	2931	3	ISM	ENSMUSG00000038836.16	ENSMUST00000135304.8	3384	7	-7	17513	3	557	5prime_fragment	FALSE	canonical	3	5	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCAAAAGCAATCTGT	1662	False	NA	NA	False	AATAAA	-15	NA	34757369	34763211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_34759154_34760504_34760566_34762125
ENSMUSG00000038836.16_3	chr6	+	1893	4	FSM	ENSMUSG00000038836.16	ENSMUST00000115014.8	805	4	-454	-634	3	559	multi-exon	FALSE	canonical	2	5	junction_3	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCAAAAGCAATCTGTAC	1662	False	NA	NA	False	AATAAA	-17	NA	34757369	34763213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_34757995_34759034_34759154_34760504_34760566_34762125
ENSMUSG00000038838.16_3	chr17	-	3649	29	FSM	ENSMUSG00000038838.16	ENSMUST00000043674.15	4425	29	20	756	20	0	multi-exon	FALSE	canonical	0	0	junction_15	44.4260449442414	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACGCAAGTGTGAGCCT	1781	False	NA	-8	True	GATAAA	-13	NA	35978464	35967281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35967545_35967627_35967751_35967841_35968018_35968098_35968211_35969023_35969231_35969918_35970072_35970153_35970282_35970366_35970446_35970543_35970613_35970691_35970797_35970893_35971020_35971105_35971177_35971295_35971402_35971615_35971692_35971767_35971845_35972466_35972549_35972793_35972898_35972994_35973123_35973895_35973987_35974353_35974443_35974962_35975075_35975387_35975508_35975662_35975745_35976677_35976776_35976864_35976932_35977022_35977145_35977546_35977648_35977735_35977818_35977964
ENSMUSG00000038838.16_4	chr17	-	3650	29	NNC	ENSMUSG00000038838.16	novel	4425	29	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	57.9139381728948	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACGCAAGTGTGAGCCT	1779	False	NA	-8	True	GATAAA	-13	NA	35978466	35967281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_35967545_35967627_35967751_35967841_35968018_35968098_35968211_35969023_35969231_35969918_35970072_35970153_35970281_35970366_35970446_35970543_35970613_35970691_35970797_35970893_35971020_35971105_35971177_35971295_35971402_35971615_35971692_35971767_35971845_35972466_35972549_35972793_35972898_35972994_35973123_35973895_35973987_35974353_35974443_35974962_35975075_35975387_35975508_35975662_35975745_35976677_35976776_35976864_35976932_35977022_35977145_35977546_35977648_35977735_35977818_35977964
ENSMUSG00000038840.8_0	chr2	+	1944	6	FSM	ENSMUSG00000038840.8	ENSMUST00000137859.2	1529	6	-414	-1	-414	1	multi-exon	FALSE	canonical	3	12	junction_1	3.81575680566778	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCTCAGCTAGGCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	180570401	180575801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180571307_180572597_180573131_180573211_180573258_180574711_180574784_180574929_180575129_180575612
ENSMUSG00000038840.8_2	chr2	+	1259	7	FSM	ENSMUSG00000038840.8	ENSMUST00000108875.2	1178	7	-82	1	-82	-1	multi-exon	FALSE	canonical	3	9	junction_2	4.30761599444003	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTCAGCTAGGCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	180570733	180575802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180571307_180572597_180572698_180573051_180573131_180573211_180573258_180574711_180574784_180574929_180575129_180575612
ENSMUSG00000038843.19_0	chr19	-	4569	3	FSM	ENSMUSG00000038843.19	ENSMUST00000174236.8	4606	3	28	9	28	-7	multi-exon	FALSE	canonical	3	31	junction_2	7	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCAATGCTATGTCTG	8062	False	NA	-7	True	AATAAA	-12	NA	17334003	17303513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_17307853_17310473_17310621_17333920
ENSMUSG00000038843.19_1	chr19	-	3332	1	ISM	ENSMUSG00000038843.19	ENSMUST00000174236.8	4606	3	27186	9	5955	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCAATGCTATGTCTG	NA	False	NA	-7	True	AATAAA	-12	NA	17306845	17303513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_17303500_17306800
ENSMUSG00000038844.11_0	chr2	-	5130	26	FSM	ENSMUSG00000038844.11	ENSMUST00000043589.8	6383	26	64	1189	-23	48	multi-exon	FALSE	canonical	3	64	junction_14	9.18050107564941	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTGTAGTTCAGTTTAAG	NA	False	NA	NA	False	ATTAAA	-17	NA	142743387	142460582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_142461837_142490347_142490432_142514208_142514299_142532498_142532622_142544542_142544594_142545861_142545959_142549178_142549332_142553614_142554959_142556598_142556653_142581442_142581532_142582828_142582912_142598008_142598147_142599816_142599869_142600709_142600830_142675996_142676057_142679436_142679503_142688848_142689025_142689910_142690043_142690212_142690382_142691783_142691927_142695546_142695657_142696353_142696452_142699230_142699348_142704346_142704461_142707263_142707334_142743244
ENSMUSG00000038844.11_10	chr2	-	5043	25	NIC	ENSMUSG00000038844.11	novel	6383	26	NA	NA	-22	46	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	18.7234534296783	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCCTGTAGTTCAGTTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	142743386	142460584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_142461837_142514208_142514299_142532498_142532622_142544542_142544594_142545861_142545959_142549178_142549332_142553614_142554959_142556598_142556653_142581442_142581532_142582828_142582912_142598008_142598147_142599816_142599869_142600709_142600830_142675996_142676057_142679436_142679503_142688848_142689025_142689910_142690043_142690212_142690382_142691783_142691927_142695546_142695657_142696353_142696452_142699230_142699348_142704346_142704461_142707263_142707334_142743244
ENSMUSG00000038844.11_13	chr2	-	5003	25	NIC	ENSMUSG00000038844.11	novel	6383	26	NA	NA	-24	43	combination_of_known_splicesites	FALSE	canonical	1	5	junction_3	17.7575785855567	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATACCCTGTAGTTCAGT	NA	False	NA	NA	False	ATTAAA	-12	NA	142743388	142460587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_142461837_142490347_142490432_142514208_142514299_142544542_142544594_142545861_142545959_142549178_142549332_142553614_142554959_142556598_142556653_142581442_142581532_142582828_142582912_142598008_142598147_142599816_142599869_142600709_142600830_142675996_142676057_142679436_142679503_142688848_142689025_142689910_142690043_142690212_142690382_142691783_142691927_142695546_142695657_142696353_142696452_142699230_142699348_142704346_142704461_142707263_142707334_142743244
ENSMUSG00000038844.11_3	chr2	-	3236	8	ISM	ENSMUSG00000038844.11	ENSMUST00000230763.2	6404	27	188732	898	-10116	339	3prime_fragment	FALSE	canonical	3	82	junction_7	5.97272713153339	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAAAACGGACTCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	142554707	142460291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_142461837_142490347_142490432_142514208_142514299_142532498_142532622_142544542_142544594_142545861_142545959_142549178_142549332_142553614
ENSMUSG00000038845.12_0	chr11	+	1008	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	53	738	0	327	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	2454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATCAAGCGAAGCTTTT	NA	False	NA	7	True	AATAAA	-23	NA	95557835	95570861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
ENSMUSG00000038845.12_34	chr11	+	977	6	ISM	ENSMUSG00000038845.12	ENSMUST00000036374.6	724	7	971	-327	971	327	3prime_fragment	FALSE	canonical	3	4384	junction_2	706.937507846344	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATCAAGCGAAGCTTTT	NA	False	NA	7	True	AATAAA	-23	NA	95558860	95570861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
ENSMUSG00000038848.15_0	chr2	-	3175	5	FSM	ENSMUSG00000038848.15	ENSMUST00000037299.15	3184	5	4	5	4	-5	multi-exon	FALSE	canonical	3	557	junction_4	33.5885024971343	1074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAAGCTTGTGTGTTCTTG	NA	False	NA	-7	True	NA	NA	NA	180562738	180546174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_180547462_180552479_180554001_180560927_180561008_180562104_180562130_180562476
ENSMUSG00000038848.15_3	chr2	-	2382	2	ISM	ENSMUSG00000038848.15	ENSMUST00000037299.15	3184	5	9168	5	8606	-5	3prime_fragment	FALSE	canonical	3	596	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAAGCTTGTGTGTTCTTG	NA	False	NA	-7	True	NA	NA	NA	180553574	180546174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_180547462_180552479
ENSMUSG00000038855.11_3	chr1	+	6197	8	FSM	ENSMUSG00000038855.11	ENSMUST00000070181.7	6235	8	34	4	34	-4	multi-exon	FALSE	canonical	1	1	junction_4	2.77010277566647	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTAGCTTGATGTGATC	NA	False	NA	NA	False	AATAAA	-13	NA	180158083	180252363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180158345_180159676_180161796_180240238_180240339_180241351_180241566_180245718_180245924_180247822_180247925_180248839_180248912_180249239
ENSMUSG00000038859.8_0	chr5	-	2283	14	FSM	ENSMUSG00000038859.8	ENSMUST00000055190.8	3247	14	29	935	29	-935	multi-exon	FALSE	canonical	2	11	junction_13	4.28979799803037	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATTTTTACCTTTTGATT	NA	False	NA	NA	False	ATTAAA	-16	NA	144294893	144202270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_144202843_144203417_144203456_144212582_144212776_144214454_144214527_144215337_144215549_144217629_144217778_144218799_144218968_144221253_144221407_144222267_144222406_144222884_144222957_144223059_144223122_144255738_144255826_144261366_144261443_144294600
ENSMUSG00000038859.8_3	chr5	-	2838	13	NIC	ENSMUSG00000038859.8	novel	3247	14	NA	NA	42	-942	intron_retention	FALSE	canonical	2	11	junction_12	4.25163367294137	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACCCAATTTTTACCT	NA	False	NA	NA	False	ATTAAA	-9	NA	144294880	144202277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_144203456_144212582_144212776_144214454_144214527_144215337_144215549_144217629_144217778_144218799_144218968_144221253_144221407_144222267_144222406_144222884_144222957_144223059_144223122_144255738_144255826_144261366_144261443_144294600
ENSMUSG00000038860.16_0	chr2	-	3612	30	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	3	63	junction_11	18.462418040573	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTCTGCAACCCTTCTCA	NA	False	NA	-9	True	AATAAA	-19	NA	33020619	32876384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32876843_32879517_32879645_32880575_32880792_32882134_32882274_32885058_32885178_32887667_32887776_32892790_32892858_32893795_32893955_32895060_32895240_32896809_32896927_32897260_32897360_32901411_32901524_32905197_32905273_32906696_32906802_32908512_32908629_32912673_32912781_32913500_32913547_32916091_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995036_33020435
ENSMUSG00000038860.16_30	chr2	-	3435	29	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_28	24.7232642650271	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTCTGCAACCCTTCTC	NA	False	NA	-10	True	AATAAA	-18	NA	33020614	32876385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32876843_32879517_32879645_32880575_32880792_32882134_32882274_32885058_32885178_32887667_32887776_32892790_32892858_32893795_32893955_32895060_32895240_32896809_32896927_32897260_32897360_32901411_32901524_32905197_32905273_32906696_32906802_32908512_32908629_32912673_32912781_32913500_32913547_32916091_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_33020435
ENSMUSG00000038860.16_37	chr2	-	3314	28	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	2	-3902	combination_of_known_junctions	FALSE	canonical	3	63	junction_9	18.5239251366749	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAGAAAATGACA	NA	False	NA	NA	False	NA	NA	NA	33020618	32880287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32880792_32882134_32882274_32885058_32885178_32887667_32887776_32892790_32892858_32893795_32893955_32895060_32895240_32896809_32896927_32897260_32897360_32901411_32901524_32905197_32905273_32906696_32906802_32908512_32908629_32912673_32912781_32913500_32913547_32916091_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995036_33020435
ENSMUSG00000038860.16_46	chr2	-	1707	13	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	-13	-6341	combination_of_known_junctions	FALSE	canonical	3	92	junction_11	11.9953694769644	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATGTATGTGAGTTCAC	NA	False	NA	NA	False	NA	NA	NA	33020633	32915661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995036_33020435
ENSMUSG00000038861.15_1	chr3	+	3261	11	FSM	ENSMUSG00000038861.15	ENSMUST00000072287.12	3692	11	209	222	64	-160	multi-exon	FALSE	canonical	3	26	junction_8	4.61410879802373	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTCTTGTTGCTTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	94882250	94913932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94882397_94891293_94892231_94900276_94900505_94901471_94901700_94903145_94903256_94903890_94903996_94904162_94904287_94906158_94906425_94911550_94911684_94911944_94912066_94913069
ENSMUSG00000038861.15_2	chr3	+	3351	8	ISM	ENSMUSG00000038861.15	ENSMUST00000072287.12	3692	11	16	6716	16	4183	5prime_fragment	FALSE	canonical	3	27	junction_2	4.7723694538543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94882057	94907438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_94882397_94891293_94892231_94900276_94900505_94901471_94901700_94903145_94903256_94903890_94903996_94904162_94904287_94906158
ENSMUSG00000038861.15_3	chr3	+	2334	10	FSM	ENSMUSG00000038861.15	ENSMUST00000167008.8	1962	10	99	-471	54	-160	multi-exon	FALSE	canonical	0	0	junction_1	11.4611528517579	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTCTTGTTGCTTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	94882240	94913932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94882397_94900276_94900505_94901471_94901700_94903145_94903256_94903890_94903996_94904162_94904287_94906158_94906425_94911550_94911684_94911944_94912066_94913069
ENSMUSG00000038861.15_4	chr3	+	3301	12	FSM	ENSMUSG00000038861.15	ENSMUST00000107251.9	2895	12	66	-472	66	-163	multi-exon	FALSE	canonical	2	3	junction_2	12.4389417848655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCATCTGTCTTGTTGCTT	NA	False	NA	NA	False	AATAAA	-11	NA	94882252	94913929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94882397_94891293_94892231_94896613_94896659_94900276_94900505_94901471_94901700_94903145_94903256_94903890_94903996_94904162_94904287_94906158_94906425_94911550_94911684_94911944_94912066_94913069
ENSMUSG00000038861.15_6	chr3	+	2769	10	ISM	ENSMUSG00000038861.15	ENSMUST00000072287.12	3692	11	9595	225	8182	-163	3prime_fragment	FALSE	canonical	3	26	junction_7	4.54877544232416	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCATCTGTCTTGTTGCTT	4654	False	NA	NA	False	AATAAA	-11	NA	94891636	94913929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_94892231_94900276_94900505_94901471_94901700_94903145_94903256_94903890_94903996_94904162_94904287_94906158_94906425_94911550_94911684_94911944_94912066_94913069
ENSMUSG00000038866.16_0	chr1	+	5498	14	FSM	ENSMUSG00000038866.16	ENSMUST00000118196.8	5796	14	276	22	-7	-15	multi-exon	FALSE	canonical	3	33	junction_13	14.3605310511487	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATGAAAAACAGCCT	NA	False	NA	-6	True	NA	NA	NA	105918411	105961782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_105919438_105928660_105928773_105931829_105931907_105933744_105933817_105939431_105939545_105943728_105943824_105945948_105946033_105947577_105947636_105949455_105949589_105950929_105950995_105951393_105951489_105955132_105955262_105957481_105958964_105959825
ENSMUSG00000038866.16_1	chr1	+	6302	12	NIC	ENSMUSG00000038866.16	novel	6368	13	NA	NA	-24	-18	intron_retention	FALSE	canonical	3	10	junction_3	19.1988291654026	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAATGAAAAACAG	NA	False	NA	-9	True	NA	NA	NA	105918394	105961779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_105919438_105928660_105928773_105931829_105931907_105939431_105939545_105943728_105943824_105945948_105946033_105947577_105947636_105949455_105949589_105950929_105950995_105951393_105951489_105955132_105955262_105957481
ENSMUSG00000038866.16_2	chr1	+	5520	14	NIC	ENSMUSG00000038866.16	novel	5796	14	NA	NA	-17	-18	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	17.8706728117763	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAATGAAAAACAG	NA	False	NA	-9	True	NA	NA	NA	105918401	105961779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_105919438_105928660_105928773_105931829_105931907_105933744_105933817_105939431_105939545_105943728_105943824_105945948_105946033_105947577_105947636_105949455_105949589_105950929_105950995_105951393_105951489_105955117_105955262_105957481_105958964_105959825
ENSMUSG00000038866.16_20	chr1	+	2640	1	NIC	ENSMUSG00000038866.16	novel	5796	14	NA	NA	19666	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAATGAAAAACAG	NA	False	NA	-9	True	NA	NA	NA	105959139	105961779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_105959100_105961800
ENSMUSG00000038866.16_21	chr1	+	2746	2	ISM	ENSMUSG00000038866.16	ENSMUST00000118196.8	5796	14	40036	25	18698	-18	3prime_fragment	FALSE	canonical	3	33	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAATGAAAAACAG	NA	False	NA	-9	True	NA	NA	NA	105958171	105961779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_105958964_105959825
ENSMUSG00000038866.16_3	chr1	+	6370	13	FSM	ENSMUSG00000038866.16	ENSMUST00000119166.8	6368	13	-17	15	-17	-15	multi-exon	FALSE	canonical	3	40	junction_3	12.1609575646365	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATGAAAAACAGCCT	NA	False	NA	-6	True	NA	NA	NA	105918401	105961782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_105919438_105928660_105928773_105931829_105931907_105933744_105933817_105939431_105939545_105943728_105943824_105945948_105946033_105947577_105947636_105949455_105949589_105950929_105950995_105951393_105951489_105955132_105955262_105957481
ENSMUSG00000038866.16_4	chr1	+	5439	13	NIC	ENSMUSG00000038866.16	novel	5796	14	NA	NA	-23	-18	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	20.013016597538	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAATGAAAAACAG	NA	False	NA	-9	True	NA	NA	NA	105918395	105961779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_105919438_105928660_105928773_105931829_105931907_105939431_105939545_105943728_105943824_105945948_105946033_105947577_105947636_105949455_105949589_105950929_105950995_105951393_105951489_105955132_105955262_105957481_105958964_105959825
ENSMUSG00000038866.16_5	chr1	+	6382	13	NIC	ENSMUSG00000038866.16	novel	6368	13	NA	NA	-17	-18	intron_retention	FALSE	canonical	3	22	junction_11	16.9016764454496	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAATGAAAAACAG	NA	False	NA	-9	True	NA	NA	NA	105918401	105961779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_105919438_105928660_105928773_105931829_105931907_105933744_105933817_105939431_105939545_105943728_105943824_105945948_105946033_105947577_105947636_105949455_105949589_105950929_105950995_105951393_105951489_105955117_105955262_105957481
ENSMUSG00000038866.16_8	chr1	+	5434	13	NIC	ENSMUSG00000038866.16	novel	5796	14	NA	NA	-3	-18	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	22.4590677059895	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAATGAAAAACAG	NA	False	NA	-9	True	NA	NA	NA	105918415	105961779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_105919438_105928660_105928773_105931829_105931907_105939431_105939545_105943728_105943824_105945948_105946033_105947577_105947636_105949455_105949589_105950929_105950995_105951393_105951489_105955117_105955262_105957481_105958964_105959825
ENSMUSG00000038871.6_0	chr6	+	1915	2	FSM	ENSMUSG00000038871.6	ENSMUST00000135743.2	1861	2	-54	0	-54	0	multi-exon	FALSE	canonical	3	97	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCATTGACAGACTATAAT	NA	False	NA	NA	False	ATTAAA	-14	NA	34453236	34466018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_34453358_34464224
ENSMUSG00000038871.6_1	chr6	+	1623	3	FSM	ENSMUSG00000038871.6	ENSMUST00000045372.6	2220	3	107	490	-42	-490	multi-exon	FALSE	canonical	3	82	junction_2	7.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACACGCGCAAGGTGCCT	NA	False	NA	11	True	AATAAA	-16	NA	34453248	34482058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_34453358_34464224_34464886_34481205
ENSMUSG00000038871.6_7	chr6	+	506	1	ISM	ENSMUSG00000038871.6	ENSMUST00000045372.6	2220	3	28409	492	27474	-492	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAACACGCGCAAGGTGC	5226	False	NA	9	True	AATAAA	-14	NA	34481550	34482056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_34481600_34482100
ENSMUSG00000038872.11_3	chr8	+	4155	2	ISM	ENSMUSG00000038872.11	ENSMUST00000043896.10	16433	10	234951	4270	234951	-4270	3prime_fragment	FALSE	canonical	2	7	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAACACGAA	NA	False	NA	NA	False	NA	NA	NA	109676226	109683992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_109678403_109682013
ENSMUSG00000038872.11_4	chr8	+	1673	1	ISM	ENSMUSG00000038872.11	ENSMUST00000220518.2	17152	16	1013620	3694	241620	-3694	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AAGAAA	-41	NA	109682895	109684568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_109682900_109684600
ENSMUSG00000038872.11_5	chr8	+	2686	1	ISM	ENSMUSG00000038872.11	ENSMUST00000220518.2	17152	16	1015724	577	243724	-577	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCATAAAACTGAGTTGGT	NA	False	NA	NA	False	AATAAA	-19	NA	109684999	109687685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_109685000_109687700
ENSMUSG00000038876.13_0	chr10	-	1914	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160144.9	4323	3	399	2010	4	-10	multi-exon	FALSE	canonical	3	77	junction_2	74.5	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGTTTATCAGAAATAATT	NA	False	NA	NA	False	AATAAA	-5	NA	29238039	29222181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_29223880_29230287_29230444_29237979
ENSMUSG00000038876.13_2	chr10	-	1984	4	FSM	ENSMUSG00000038876.13	ENSMUST00000161508.3	945	4	6	-1045	6	2	multi-exon	FALSE	canonical	3	17	junction_3	93.3821301011185	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATTTGTTTGAGTCTG	NA	False	NA	NA	False	AATAAA	-17	NA	29238016	29222169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237959
ENSMUSG00000038876.13_3	chr10	-	1240	1	ISM	ENSMUSG00000038876.13	ENSMUST00000160144.9	4323	3	15024	2003	10295	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGAAATAATTTGTTTGA	NA	False	NA	NA	False	AATAAA	-12	NA	29223414	29222174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_29222200_29223400
ENSMUSG00000038876.13_4	chr10	-	1923	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160372.9	1948	3	4	21	4	-21	multi-exon	FALSE	canonical	3	93	junction_2	66.5	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAAATACTAGAGTTTAT	NA	False	NA	NA	False	ATTAAA	-15	NA	29238039	29222192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_29223880_29230287_29230444_29237959
ENSMUSG00000038876.13_5	chr10	-	1977	4	FSM	ENSMUSG00000038876.13	ENSMUST00000214896.2	781	4	10	-1206	10	-2	multi-exon	FALSE	canonical	3	10	junction_3	95.3601360923712	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAATAATTTGTTTGAG	NA	False	NA	NA	False	AATAAA	-13	NA	29238033	29222173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237979
ENSMUSG00000038876.13_6	chr10	-	2577	3	ISM	ENSMUSG00000038876.13	ENSMUST00000161508.3	945	4	7	-1021	7	-22	intron_retention	FALSE	canonical	3	41	junction_2	92.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATAAATACTAGAGTTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	29238015	29222193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_29223880_29230287_29230444_29237280
ENSMUSG00000038879.9_4	chr15	-	1703	11	FSM	ENSMUSG00000038879.9	ENSMUST00000040791.9	4331	11	505	2123	-3	584	multi-exon	FALSE	canonical	2	3	junction_3	2.40831891575846	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGAGTTTACAGGGGT	338	False	NA	NA	False	AATAAA	-13	NA	34678853	34575067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_34575718_34577715_34577811_34578853_34578918_34582866_34582956_34584775_34584912_34600160_34600258_34609318_34609441_34625117_34625178_34648811_34648984_34650527_34650597_34678704
ENSMUSG00000038880.14_0	chr17	+	882	3	FSM	ENSMUSG00000038880.14	ENSMUST00000043907.14	918	3	31	5	12	-5	multi-exon	FALSE	canonical	3	645	junction_1	12	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTGTGTTGTGGTTTCA	NA	False	NA	11	True	AATAAA	-11	NA	25114120	25115258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25114463_25114635_25114679_25114761
ENSMUSG00000038880.14_2	chr17	+	1044	2	FSM	ENSMUSG00000038880.14	ENSMUST00000138648.2	899	2	24	-169	24	-4	multi-exon	FALSE	canonical	3	669	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGTGTTGTGGTTTCAT	NA	False	NA	12	True	AATAAA	-12	NA	25114132	25115259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25114679_25114761
ENSMUSG00000038880.14_9	chr17	+	1116	1	NIC	ENSMUSG00000038880.14	novel	918	3	NA	NA	31	-8	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCCTGTGTTGTGGTT	NA	False	NA	8	True	AATAAA	-8	NA	25114139	25115255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25114100_25115300
ENSMUSG00000038884.15_1	chr9	+	1645	8	FSM	ENSMUSG00000038884.15	ENSMUST00000043911.8	1683	8	25	13	9	-13	multi-exon	TRUE	canonical	3	59	junction_6	22.3469853694417	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTCTTCTTCAGAGTAA	NA	False	NA	6	True	AATAAA	-15	NA	20779962	20785590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
ENSMUSG00000038884.15_10	chr9	+	3067	7	NIC	ENSMUSG00000038884.15	novel	1683	8	NA	NA	35	-116	intron_retention	FALSE	canonical	3	7	junction_3	41.2812171439856	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTGCAAAGCTTTTGC	NA	False	NA	-97	True	AATAAA	-17	NA	20780010	20785487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_20780233_20780625_20780750_20780899_20780950_20781057_20782532_20782671_20782822_20784163_20784561_20784837
ENSMUSG00000038884.15_2	chr9	+	3317	6	NIC	ENSMUSG00000038884.15	novel	3210	7	NA	NA	-3	-12	intron_retention	FALSE	canonical	3	88	junction_4	15.3414471286121	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTCTTCTTCAGAGTAAT	NA	False	NA	7	True	AATAAA	-16	NA	20779972	20785591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_20780233_20780625_20780750_20780899_20782532_20782671_20782822_20784163_20784561_20784837
ENSMUSG00000038884.15_3	chr9	+	1747	7	NIC	ENSMUSG00000038884.15	novel	1683	8	NA	NA	22	-14	intron_retention	FALSE	canonical	3	88	junction_5	14.0118997046558	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTTCTTCTTCAGAGTA	NA	False	NA	5	True	AATAAA	-14	NA	20779997	20785589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784561_20784837
ENSMUSG00000038884.15_6	chr9	+	3473	5	NIC	ENSMUSG00000038884.15	novel	3210	7	NA	NA	-9	-12	intron_retention	FALSE	canonical	3	88	junction_3	17.1227188261678	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTCTTCTTCAGAGTAAT	NA	False	NA	7	True	AATAAA	-16	NA	20779966	20785591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_20780233_20780625_20782532_20782671_20782822_20784163_20784561_20784837
ENSMUSG00000038884.15_8	chr9	+	3171	7	FSM	ENSMUSG00000038884.15	ENSMUST00000175820.8	3210	7	27	12	5	-12	multi-exon	FALSE	canonical	3	59	junction_5	23.9704679414761	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTCTTCTTCAGAGTAAT	NA	False	NA	7	True	AATAAA	-16	NA	20779980	20785591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_20780233_20780625_20780750_20780899_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
ENSMUSG00000038886.11_47	chr7	-	5153	24	FSM	ENSMUSG00000038886.11	ENSMUST00000098346.5	6554	24	56	1345	56	825	multi-exon	FALSE	canonical	0	0	junction_22	14.6847142211905	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCTACCTAAGAAACCTGT	4057	False	NA	NA	False	TTTAAA	-6	NA	80021067	80000189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80001600_80002673_80002782_80002909_80003111_80006089_80006227_80007990_80008133_80008657_80008792_80009027_80009143_80009383_80009507_80010643_80010881_80012046_80012213_80012356_80012425_80012636_80012752_80012901_80013085_80013214_80013418_80013675_80013854_80016616_80016804_80017058_80017233_80017444_80017573_80017961_80018134_80018253_80018399_80018467_80018726_80019340_80019494_80020479_80020678_80020849
ENSMUSG00000038888.9_0	chr7	+	2471	3	FSM	ENSMUSG00000038888.9	ENSMUST00000038332.9	2475	3	1	3	1	-3	multi-exon	FALSE	canonical	3	64	junction_1	1	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGTTTTTGGTCTGGT	NA	False	NA	5	True	NA	NA	NA	43321440	43327719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43321500_43324527_43325071_43325850
ENSMUSG00000038888.9_1	chr7	+	2275	2	ISM	ENSMUSG00000038888.9	ENSMUST00000038332.9	2475	3	3225	3	3225	-3	3prime_fragment	FALSE	canonical	3	66	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGTTTTTGGTCTGGT	NA	False	NA	5	True	NA	NA	NA	43324664	43327719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43325071_43325850
ENSMUSG00000038888.9_5	chr7	+	1493	1	ISM	ENSMUSG00000038888.9	ENSMUST00000038332.9	2475	3	4787	3	4787	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGTTTTTGGTCTGGT	NA	False	NA	5	True	NA	NA	NA	43326226	43327719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43326200_43327700
ENSMUSG00000038893.13_0	chr11	+	2311	8	FSM	ENSMUSG00000038893.13	ENSMUST00000037502.7	2317	8	2	4	0	-4	multi-exon	FALSE	canonical	3	42	junction_6	7.85324578679129	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTTGGGTTTTCTGAA	NA	False	NA	9	True	AATAAA	-11	NA	95227845	95272694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95228088_95254824_95254995_95262263_95262360_95265807_95265919_95266454_95266590_95268308_95268508_95269644_95269796_95271487
ENSMUSG00000038893.13_12	chr11	+	1780	5	ISM	ENSMUSG00000038893.13	ENSMUST00000037502.7	2317	8	37982	9	-467	-9	3prime_fragment	FALSE	canonical	3	42	junction_3	9.41740410091868	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCAGCAGTTTGGGTTTT	4243	False	NA	4	True	AATAAA	-6	NA	95265825	95272689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_95265919_95266454_95266590_95268308_95268508_95269644_95269796_95271487
ENSMUSG00000038893.13_5	chr11	+	2052	7	ISM	ENSMUSG00000038893.13	ENSMUST00000037502.7	2317	8	26998	4	-11451	-4	3prime_fragment	FALSE	canonical	3	42	junction_5	8.23947139620552	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTTGGGTTTTCTGAA	NA	False	NA	9	True	AATAAA	-11	NA	95254841	95272694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_95254995_95262263_95262360_95265807_95265919_95266454_95266590_95268308_95268508_95269644_95269796_95271487
ENSMUSG00000038893.13_6	chr11	+	1871	6	ISM	ENSMUSG00000038893.13	ENSMUST00000037502.7	2317	8	34448	4	-4001	-4	3prime_fragment	FALSE	canonical	3	42	junction_4	8.73155198117723	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTTGGGTTTTCTGAA	709	False	NA	9	True	AATAAA	-11	NA	95262291	95272694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_95262360_95265807_95265919_95266454_95266590_95268308_95268508_95269644_95269796_95271487
ENSMUSG00000038893.13_8	chr11	+	1420	3	ISM	ENSMUSG00000038893.13	ENSMUST00000037502.7	2317	8	40603	3	2154	-3	3prime_fragment	FALSE	canonical	3	42	junction_1	4.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTTTGGGTTTTCTGAAT	6864	False	NA	10	True	AATAAA	-12	NA	95268446	95272695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_95268508_95269644_95269796_95271487
ENSMUSG00000038893.13_9	chr11	+	2105	8	Fusion	ENSMUSG00000038893.13_ENSMUSG00000085143.2	novel	400	2	NA	NA	-11	-4	multi-exon	FALSE	canonical	0	0	junction_1	21.4637805978122	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTTGGGTTTTCTGAA	NA	False	NA	9	True	AATAAA	-11	NA	95201243	95272694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr11_+_95201280_95254824_95254995_95262263_95262360_95265807_95265919_95266454_95266590_95268308_95268508_95269644_95269796_95271487
ENSMUSG00000038894.8_0	chr8	-	5031	2	FSM	ENSMUSG00000038894.8	ENSMUST00000040514.8	6323	2	1285	7	1285	-7	multi-exon	FALSE	canonical	2	9	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGAATACAGATTGGAGG	NA	False	NA	NA	False	AATAAA	-20	NA	11057173	11034687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_11037015_11054469
ENSMUSG00000038894.8_1	chr8	-	2287	1	ISM	ENSMUSG00000038894.8	ENSMUST00000040514.8	6323	2	21487	4	21487	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATACAGATTGGAGGACA	NA	False	NA	NA	False	AATAAA	-23	NA	11036971	11034684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_11034700_11037000
ENSMUSG00000038895.17_0	chr9	-	2157	9	FSM	ENSMUSG00000038895.17	ENSMUST00000179605.9	1888	9	-29	-240	6	0	multi-exon	FALSE	canonical	3	19	junction_5	12.5299640861417	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTAAGCCTGGATAATTGT	9432	False	NA	-1	True	ATTAAA	-22	NA	21982666	21966755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21967190_21967288_21967389_21967709_21967825_21968582_21968695_21968796_21968999_21969099_21969712_21976996_21977213_21979443_21979488_21982344
ENSMUSG00000038895.17_1	chr9	-	2137	9	FSM	ENSMUSG00000038895.17	ENSMUST00000043922.7	2108	9	-31	2	0	-2	multi-exon	FALSE	canonical	3	20	junction_5	12.3129758791285	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCTAAGCCTGGATAATT	9426	False	NA	-3	True	ATTAAA	-20	NA	21982672	21966757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21967190_21967288_21967389_21967709_21967825_21968582_21968695_21968796_21968975_21969099_21969712_21976996_21977213_21979443_21979488_21982344
ENSMUSG00000038895.17_24	chr9	-	2579	7	FSM	ENSMUSG00000038895.17	ENSMUST00000216916.2	2534	7	-93	48	7	1	multi-exon	FALSE	canonical	3	32	junction_6	10.2102889283311	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGCCTGGATAATTGTG	9433	False	NA	0	True	ATTAAA	-23	NA	21982665	21966754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21967190_21967288_21967825_21968582_21968695_21968796_21969712_21976996_21977213_21979443_21979488_21982344
ENSMUSG00000038895.17_3	chr9	-	2261	8	NIC	ENSMUSG00000038895.17	novel	2108	9	NA	NA	1	-2	intron_retention	FALSE	canonical	3	32	junction_7	10.0203873810001	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCTAAGCCTGGATAATT	9427	False	NA	-3	True	ATTAAA	-20	NA	21982671	21966757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21967190_21967288_21967389_21967709_21967825_21968582_21968695_21968796_21969712_21976996_21977213_21979443_21979488_21982344
ENSMUSG00000038895.17_6	chr9	-	2051	7	NIC	ENSMUSG00000038895.17	novel	2108	9	NA	NA	-2	0	intron_retention	FALSE	canonical	3	10	junction_2	16.2035661369822	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTAAGCCTGGATAATTGT	9524	False	NA	-1	True	ATTAAA	-22	NA	21982574	21966755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21967190_21967288_21967389_21968582_21968695_21968796_21969712_21976996_21977213_21979443_21979488_21982344
ENSMUSG00000038900.18_0	chr2	+	631	7	FSM	ENSMUSG00000038900.18	ENSMUST00000126610.2	1242	7	154	457	-7	-4	multi-exon	FALSE	canonical	3	2580	junction_6	1457.06650690885	825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAATGGGCTTGGCTGCT	5795	False	NA	18	True	AATAAA	-17	NA	32851724	32854051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
ENSMUSG00000038900.18_23	chr2	+	397	5	ISM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	867	4	341	-4	3prime_fragment	FALSE	canonical	3	2580	junction_4	1761.7147009377	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAATGGGCTTGGCTGCT	6689	False	NA	18	True	AATAAA	-17	NA	32852618	32854051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
ENSMUSG00000038900.18_9	chr2	+	750	7	FSM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	-25	4	-5	-4	multi-exon	FALSE	canonical	3	310	junction_1	2477.85254246943	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAATGGGCTTGGCTGCT	5797	False	NA	18	True	AATAAA	-17	NA	32851726	32854051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
ENSMUSG00000038902.15_1	chr3	+	5092	19	FSM	ENSMUSG00000038902.15	ENSMUST00000107270.9	6399	19	-150	1457	-150	-6	multi-exon	FALSE	canonical	3	43	junction_5	12.0021860148809	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGAAAAATGAATCCCA	NA	False	NA	62	True	TATAAA	-5	NA	94744727	94788180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94745052_94761260_94761386_94763353_94763513_94768106_94768283_94769732_94769842_94771398_94771690_94771768_94771979_94777390_94777498_94778298_94778637_94779583_94779739_94781904_94782006_94782410_94782558_94783946_94784082_94784224_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
ENSMUSG00000038902.15_16	chr3	+	4754	18	ISM	ENSMUSG00000038902.15	ENSMUST00000107270.9	6399	19	16397	1457	-9764	-6	3prime_fragment	FALSE	canonical	3	43	junction_4	11.9125998254821	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGAAAAATGAATCCCA	NA	False	NA	62	True	TATAAA	-5	NA	94761274	94788180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_94761386_94763353_94763513_94768106_94768283_94769732_94769842_94771398_94771690_94771768_94771979_94777390_94777498_94778298_94778637_94779583_94779739_94781904_94782006_94782410_94782558_94783946_94784082_94784224_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
ENSMUSG00000038902.15_20	chr3	+	5864	16	ISM	ENSMUSG00000038902.15	ENSMUST00000107270.9	6399	19	23298	8	-2863	-6	3prime_fragment	FALSE	canonical	3	43	junction_2	11.4813859016332	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGACAATTTTCTGTGTTA	NA	False	NA	8	True	AATAAA	-10	NA	94768175	94789629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_94768283_94769732_94769842_94771398_94771690_94771768_94771979_94777390_94777498_94778298_94778637_94779583_94779739_94781904_94782006_94782410_94782558_94783946_94784082_94784224_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
ENSMUSG00000038902.15_25	chr3	+	4102	14	ISM	ENSMUSG00000038902.15	ENSMUST00000107266.8	4100	18	26471	-536	-335	-7	3prime_fragment	FALSE	canonical	3	52	junction_1	8.91976065696355	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATGAAAAATGAATCCC	NA	False	NA	61	True	TATAAA	-4	NA	94771494	94788179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_94771690_94771768_94771979_94777390_94777498_94778298_94778637_94779583_94779739_94781904_94782006_94782410_94782558_94783946_94784082_94784224_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
ENSMUSG00000038902.15_26	chr3	+	3730	13	ISM	ENSMUSG00000038902.15	ENSMUST00000042402.12	4775	19	26916	13	110	-13	3prime_fragment	FALSE	canonical	3	58	junction_7	7.98392482151201	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATGAAAATGAAAAATG	NA	False	NA	55	True	NA	NA	NA	94771939	94788173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_94771979_94777390_94777498_94778298_94778637_94779583_94779739_94781904_94782006_94782410_94782558_94783946_94784082_94784224_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
ENSMUSG00000038902.15_28	chr3	+	3371	11	ISM	ENSMUSG00000038902.15	ENSMUST00000042402.12	4775	19	33495	6	-104	-6	3prime_fragment	FALSE	canonical	3	58	junction_5	8.38808679020431	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGAAAAATGAATCCCA	NA	False	NA	62	True	TATAAA	-5	NA	94778518	94788180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_94778637_94779583_94779739_94781904_94782006_94782410_94782558_94783946_94784082_94784224_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
ENSMUSG00000038902.15_34	chr3	+	2685	6	ISM	ENSMUSG00000038902.15	ENSMUST00000042402.12	4775	19	39229	8	-713	-8	3prime_fragment	FALSE	canonical	3	70	junction_1	4.88262224629348	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAATGAAAAATGAATCC	NA	False	NA	60	True	TATAAA	-3	NA	94784252	94788178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
ENSMUSG00000038902.15_39	chr3	+	1597	1	ISM	ENSMUSG00000038902.15	ENSMUST00000107270.9	6399	19	41712	1451	1624	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGAATCCCACTGAAC	NA	False	NA	68	True	TATAAA	-11	NA	94786589	94788186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_94786600_94788200
ENSMUSG00000038903.14_2	chr18	+	1552	11	NNC	ENSMUSG00000038903.14	novel	1618	11	NA	NA	-41	1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	9.48946784598589	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCTCATGTCCTTCCAT	NA	False	NA	4	True	AATAAA	-15	NA	70058599	70102556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_70058692_70071916_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70089052_70089136_70093471_70093578_70094530_70094615_70099860_70099938_70102048
ENSMUSG00000038903.14_3	chr18	+	1518	11	FSM	ENSMUSG00000038903.14	ENSMUST00000043929.11	1618	11	96	4	-8	-4	multi-exon	FALSE	canonical	3	15	junction_1	8.64869932417586	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCACAGTCTCATGTCCT	NA	False	NA	-1	True	AATAAA	-10	NA	70058632	70102551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_70058692_70071912_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70089052_70089136_70093471_70093578_70094530_70094615_70099860_70099938_70102048
ENSMUSG00000038909.17_0	chr11	-	3409	14	NIC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	222.401444165419	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGACTGCTCTGAAGC	NA	False	NA	-6	True	AATAAA	-16	NA	95201029	95165085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
ENSMUSG00000038909.17_1	chr11	-	3516	15	FSM	ENSMUSG00000038909.17	ENSMUST00000107734.10	3560	15	43	1	-2	-1	multi-exon	FALSE	canonical	3	566	junction_10	130.748239149965	1107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGACTGCTCTGAAGC	NA	False	NA	-6	True	AATAAA	-16	NA	95201029	95165085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
ENSMUSG00000038909.17_10	chr11	-	3319	13	NIC	ENSMUSG00000038909.17	novel	3470	14	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	258.98824244012	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGACTGCTCTGAAGC	NA	False	NA	-6	True	AATAAA	-16	NA	95201029	95165085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
ENSMUSG00000038909.17_3	chr11	-	3426	14	FSM	ENSMUSG00000038909.17	ENSMUST00000107733.10	3470	14	43	1	-2	-1	multi-exon	FALSE	canonical	3	281	junction_9	177.090656421269	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGACTGCTCTGAAGC	NA	False	NA	-6	True	AATAAA	-16	NA	95201029	95165085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
ENSMUSG00000038910.8_0	chr17	+	3850	7	NNC	ENSMUSG00000038910.8	novel	4185	6	NA	NA	-488	-406	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	27.886675432304	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCTGGCCCAAACATGCT	NA	False	NA	NA	False	AATAAA	-19	NA	50815942	50995106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_50815976_50816392_50816966_50913322_50915810_50918019_50918224_50947143_50947220_50975026_50975137_50994739
ENSMUSG00000038910.8_11	chr17	+	1829	5	ISM	ENSMUSG00000038910.8	ENSMUST00000043938.8	4185	6	98307	406	716	-406	3prime_fragment	FALSE	canonical	3	86	junction_2	4.81534007106456	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCTGGCCCAAACATGCT	NA	False	NA	NA	False	AATAAA	-19	NA	50914737	50995106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_50915810_50918019_50918224_50947143_50947220_50975026_50975137_50994739
ENSMUSG00000038910.8_2	chr17	+	3879	7	NNC	ENSMUSG00000038910.8	novel	4185	6	NA	NA	-316	-406	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	32.5085458849755	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCTGGCCCAAACATGCT	NA	False	NA	NA	False	AATAAA	-19	NA	50816114	50995106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_50816177_50816392_50816966_50913322_50915810_50918019_50918224_50947143_50947220_50975026_50975137_50994739
ENSMUSG00000038910.8_5	chr17	+	3860	7	NNC	ENSMUSG00000038910.8	novel	4185	6	NA	NA	-263	-408	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	30.0111090542597	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATCCTGGCCCAAACATG	NA	False	NA	NA	False	AATAAA	-17	NA	50816167	50995104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_50816213_50816392_50816966_50913322_50915810_50918019_50918224_50947143_50947220_50975026_50975137_50994739
ENSMUSG00000038910.8_6	chr17	+	3633	6	FSM	ENSMUSG00000038910.8	ENSMUST00000043938.8	4185	6	146	406	146	-406	multi-exon	FALSE	canonical	3	70	junction_1	9.88736567544662	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCTGGCCCAAACATGCT	NA	False	NA	NA	False	AATAAA	-19	NA	50816576	50995106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_50816966_50913322_50915810_50918019_50918224_50947143_50947220_50975026_50975137_50994739
ENSMUSG00000038914.16_1	chr2	-	3060	1	ISM	ENSMUSG00000038914.16	ENSMUST00000087517.10	8723	16	41320	7	14925	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGTTCTTGTCTCTCTCT	NA	False	NA	-26	True	AATAAA	-7	NA	180302823	180299763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_180299800_180302800
ENSMUSG00000038914.16_3	chr2	-	8450	16	FSM	ENSMUSG00000038914.16	ENSMUST00000087517.10	8723	16	269	4	-89	-4	multi-exon	FALSE	canonical	3	16	junction_15	49.7552230647419	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTTGTCTCTCTCTTCA	NA	False	NA	-23	True	AATAAA	-10	NA	180343874	180299760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_180304377_180311183_180311380_180312057_180312148_180312653_180312808_180313184_180313708_180314075_180314212_180315023_180315129_180315267_180315385_180316483_180316644_180316760_180317221_180325601_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180343753
ENSMUSG00000038914.16_31	chr2	-	3818	4	ISM	ENSMUSG00000038914.16	ENSMUST00000130986.8	4898	6	13214	-14	12856	-1	3prime_fragment	FALSE	canonical	3	171	junction_1	8.37987005998436	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTATCCTTCTGTG	4016	False	NA	-8	True	TTTAAA	-30	NA	180330929	180322851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616
ENSMUSG00000038914.16_32	chr2	-	4646	6	FSM	ENSMUSG00000038914.16	ENSMUST00000103055.8	4613	6	-36	3	-36	-3	multi-exon	FALSE	canonical	3	159	junction_5	13.3626344707921	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTTTGTATCCTTCTG	NA	False	NA	-10	True	TTTAAA	-28	NA	180351828	180322853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180351702
ENSMUSG00000038914.16_33	chr2	-	4742	7	NIC	ENSMUSG00000038914.16	novel	4613	6	NA	NA	-20	-3	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	68.3091420593824	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTTTGTATCCTTCTG	NA	False	NA	-10	True	TTTAAA	-28	NA	180351812	180322853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180332314_180332427_180333656_180333842_180351702
ENSMUSG00000038914.16_34	chr2	-	2297	1	ISM	ENSMUSG00000038914.16	ENSMUST00000103055.8	4613	6	26642	3	-7402	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTTTGTATCCTTCTG	9795	False	NA	-10	True	TTTAAA	-28	NA	180325150	180322853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_180322900_180325200
ENSMUSG00000038914.16_35	chr2	-	4594	6	FSM	ENSMUSG00000038914.16	ENSMUST00000130986.8	4898	6	316	-12	-42	-3	multi-exon	FALSE	canonical	3	16	junction_5	68.2864554651945	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTTTGTATCCTTCTG	NA	False	NA	-10	True	TTTAAA	-28	NA	180343827	180322853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180343753
ENSMUSG00000038914.16_4	chr2	-	8454	16	NIC	ENSMUSG00000038914.16	novel	8723	16	NA	NA	-37	-6	combination_of_known_junctions	FALSE	canonical	3	75	junction_10	44.2520056042661	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTTCTTGTCTCTCTCTT	NA	False	NA	-25	True	AATAAA	-8	NA	180351829	180299762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_180304377_180311183_180311380_180312057_180312148_180312653_180312808_180313184_180313708_180314075_180314212_180315023_180315129_180315267_180315385_180316483_180316644_180316760_180317221_180325601_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180351702
ENSMUSG00000038916.8_0	chr10	+	4234	7	FSM	ENSMUSG00000038916.8	ENSMUST00000092629.4	4105	7	-156	27	-156	-27	multi-exon	FALSE	canonical	0	0	junction_1	2.91070819942883	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTGTTGAAAATATGAAAT	NA	False	NA	NA	False	AATAAA	-2	NA	29019678	29075599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_29020432_29022559_29023750_29024180_29024406_29026239_29026399_29056957_29057030_29072260_29073437_29074940
ENSMUSG00000038930.12_27	chr7	-	3417	5	NIC	ENSMUSG00000038930.12	novel	2595	7	NA	NA	6	0	intron_retention	FALSE	canonical	3	38	junction_3	5.02493781056044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAGACAAAGCTTACAAG	NA	False	NA	NA	False	NA	NA	NA	79974186	79966490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_79966799_79967200_79967231_79968606_79970930_79971024_79971092_79973497
ENSMUSG00000038930.12_29	chr7	-	2075	8	NIC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	-2	0	intron_retention	FALSE	canonical	3	15	junction_3	12.194009904499	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAATAAGACAAAGCTTACA	NA	False	NA	NA	False	NA	NA	NA	79973903	79966492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_79966799_79967200_79967231_79968606_79968775_79968993_79969090_79969839_79969962_79970049_79970930_79971024_79971092_79973497
ENSMUSG00000038930.12_3	chr7	-	1469	1	Genic_Genomic	ENSMUSG00000038930.12	novel	NA	NA	NA	NA	3260	1115	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAACTAGATCGGT	NA	False	NA	NA	False	NA	NA	NA	79965691	79964222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_79964200_79965700
ENSMUSG00000038930.12_32	chr7	-	1439	1	FSM	ENSMUSG00000038930.12	ENSMUST00000205863.2	1516	1	12	65	-2	-65	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTGAACAAGAAAGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	79973870	79972431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79972400_79973900
ENSMUSG00000038932.14_0	chr2	-	2085	5	NIC	ENSMUSG00000038932.14	novel	2225	6	NA	NA	-7	-5	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	37.9242666376029	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGGTTCCCAGTGAGTC	5362	False	NA	NA	False	AATAAA	-14	NA	180284508	180263753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_180264508_180280196_180280441_180282093_180282257_180282673_180282858_180283768
ENSMUSG00000038932.14_1	chr2	-	2230	6	FSM	ENSMUSG00000038932.14	ENSMUST00000037877.11	2225	6	-11	6	-11	-6	multi-exon	FALSE	canonical	3	29	junction_3	24.9591666527551	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGGTTCCCAGTGAGT	5358	False	NA	NA	False	AATAAA	-13	NA	180284512	180263754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_180264508_180277046_180277189_180280196_180280441_180282093_180282257_180282673_180282858_180283768
ENSMUSG00000038932.14_2	chr2	-	1862	1	NIC	ENSMUSG00000038932.14	novel	2225	6	NA	NA	18527	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTCCCAGTGAGTCGC	7882	False	NA	NA	False	AATAAA	-16	NA	180265613	180263751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_180263800_180265600
ENSMUSG00000038932.14_3	chr2	-	2233	6	NIC	ENSMUSG00000038932.14	novel	2225	6	NA	NA	-11	-6	combination_of_known_junctions	FALSE	canonical	3	36	junction_3	22.1666416039959	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGGTTCCCAGTGAGT	5358	False	NA	NA	False	AATAAA	-13	NA	180284512	180263754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_180264508_180277046_180277189_180280196_180280444_180282093_180282257_180282673_180282858_180283768
ENSMUSG00000038936.14_0	chr1	+	1904	12	FSM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	39	5	-11	-5	multi-exon	FALSE	canonical	3	160	junction_9	16.3434218576322	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGACTTTTTCCCCCTTTT	NA	False	NA	7	True	AATAAA	-14	NA	179495813	179514749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
ENSMUSG00000038943.17_0	chr7	+	2955	15	NIC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_13	288.475240333922	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTACACTGTTTTGTC	NA	False	NA	10	True	AATAAA	-20	NA	79944225	79965999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79963274_79963317_79964861
ENSMUSG00000038943.17_1	chr7	+	2913	14	FSM	ENSMUSG00000038943.17	ENSMUST00000173824.8	2912	14	-1	0	-1	0	multi-exon	FALSE	canonical	3	387	junction_13	177.415201846273	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTACACTGTTTTGTC	NA	False	NA	10	True	AATAAA	-20	NA	79944225	79965999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
ENSMUSG00000038943.17_2	chr7	+	3032	15	FSM	ENSMUSG00000038943.17	ENSMUST00000174172.8	3008	15	-27	3	-1	0	multi-exon	FALSE	canonical	3	316	junction_13	238.868890688544	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTACACTGTTTTGTC	NA	False	NA	10	True	AATAAA	-20	NA	79944225	79965999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861
ENSMUSG00000038943.17_3	chr7	+	2990	14	FSM	ENSMUSG00000038943.17	ENSMUST00000163812.9	3026	14	28	8	-1	0	multi-exon	FALSE	canonical	3	144	junction_13	239.092317096712	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTACACTGTTTTGTC	NA	False	NA	10	True	AATAAA	-20	NA	79944225	79965999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79964861
ENSMUSG00000038949.9_0	chr1	+	4613	11	FSM	ENSMUSG00000038949.9	ENSMUST00000040706.9	4709	11	86	10	-43	-10	multi-exon	FALSE	canonical	3	32	junction_8	8.09691299199886	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAACAAAATGTCTCCGAG	NA	False	NA	NA	False	TTTAAA	-7	NA	179374020	179455033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_179374182_179406902_179407334_179420249_179420432_179429266_179429298_179432083_179432171_179432517_179432633_179433812_179433835_179434001_179434099_179437350_179438232_179450331_179450468_179452563
ENSMUSG00000038949.9_10	chr1	+	3192	3	ISM	ENSMUSG00000038949.9	ENSMUST00000040706.9	4709	11	63714	7	16694	-7	3prime_fragment	FALSE	canonical	3	43	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAATGTCTCCGAGAAT	NA	False	NA	NA	False	TTTAAA	-10	NA	179437648	179455036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_179438232_179450331_179450468_179452563
ENSMUSG00000038949.9_11	chr1	+	2548	2	ISM	ENSMUSG00000038949.9	ENSMUST00000040706.9	4709	11	76453	12	29433	-12	3prime_fragment	FALSE	canonical	3	46	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACCAACAAAATGTCTCCG	NA	False	NA	NA	False	TTTAAA	-5	NA	179450387	179455031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_179450468_179452563
ENSMUSG00000038949.9_12	chr1	+	2214	1	ISM	ENSMUSG00000038949.9	ENSMUST00000040706.9	4709	11	78888	7	31868	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAATGTCTCCGAGAAT	NA	False	NA	NA	False	TTTAAA	-10	NA	179452822	179455036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_179452800_179455000
ENSMUSG00000038954.15_0	chr17	+	1440	12	FSM	ENSMUSG00000038954.15	ENSMUST00000050630.14	1508	12	64	4	64	0	multi-exon	FALSE	canonical	3	82	junction_7	13.7774519348892	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGGAGTGGCCTGCTTT	NA	False	NA	22	True	AATAAA	-23	NA	45088102	45430173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352274_45359168_45359280_45430029
ENSMUSG00000038957.14_0	chr9	+	3337	7	FSM	ENSMUSG00000038957.14	ENSMUST00000043990.14	5708	7	28	2343	1	-1247	multi-exon	FALSE	canonical	3	211	junction_3	27.6189347288333	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAAACTGCTTCCTAGAG	NA	False	NA	9	True	AATAAA	-19	NA	57615850	57657439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443
ENSMUSG00000038957.14_2	chr9	+	3021	6	FSM	ENSMUSG00000038957.14	ENSMUST00000137245.8	4277	6	13	1243	1	-1243	multi-exon	FALSE	canonical	3	26	junction_2	95.7613700820952	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGCTTCCTAGAGTGAA	NA	False	NA	13	True	AATAAA	-23	NA	57615850	57657443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57615983_57620663_57620845_57634468_57634805_57647172_57647327_57651867_57652086_57655443
ENSMUSG00000038963.16_0	chr2	+	2934	12	FSM	ENSMUSG00000038963.16	ENSMUST00000038259.13	3010	12	54	22	-35	0	multi-exon	FALSE	canonical	3	51	junction_3	7.21568539381252	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAATGATCCTTGTGTG	NA	False	NA	3	True	AATATA	-12	NA	180098091	180116638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180098167_180105733_180106622_180107389_180107481_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114627_180114895_180114961_180115306_180115456_180115896
ENSMUSG00000038963.16_1	chr2	+	2797	13	NNC	ENSMUSG00000038963.16	novel	3002	13	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_9	16.583123951777	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAATGATCCTTGTGTG	NA	False	NA	3	True	AATATA	-12	NA	180098093	180116638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_180098167_180105733_180106622_180107389_180107481_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114473_180114607_180114627_180114895_180114961_180115306_180115456_180115896
ENSMUSG00000038963.16_4	chr2	+	3047	13	FSM	ENSMUSG00000038963.16	ENSMUST00000139902.8	3002	13	-45	0	44	0	multi-exon	FALSE	canonical	1	2	junction_3	23.5743504682526	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAATGATCCTTGTGTG	NA	False	NA	3	True	AATATA	-12	NA	180098081	180116638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180098167_180105733_180106622_180107389_180107481_180107997_180108101_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114627_180114895_180114961_180115306_180115456_180115896
ENSMUSG00000038963.16_6	chr2	+	4272	11	NIC	ENSMUSG00000038963.16	novel	3002	13	NA	NA	2	-2	intron_retention	FALSE	canonical	3	55	junction_10	6.52763356814704	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATCCTTGTGTGATGTT	NA	False	NA	8	True	AATATA	-17	NA	180098128	180116643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_180098167_180105733_180106622_180107389_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114627_180114895_180114961_180115306_180115456_180115896
ENSMUSG00000038965.18_0	chr16	-	2146	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	11	452	-8	-149	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATTGTCGAAGCAAACCA	NA	False	NA	-19	True	AATAAA	-16	NA	17019345	16970330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
ENSMUSG00000038965.18_1	chr16	-	2099	3	ISM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	24983	454	-2	-151	3prime_fragment	FALSE	canonical	3	1980	junction_2	103	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAATTGTCGAAGCAAAC	NA	False	NA	-21	True	AATAAA	-14	NA	16994373	16970332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_16972147_16977853_16978041_16994275
ENSMUSG00000038965.18_4	chr16	-	1937	1	ISM	ENSMUSG00000038965.18	ENSMUST00000232139.2	2906	5	48694	6	19400	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGATTGGGTGTATGGGT	NA	False	NA	-5	True	AATAAA	-14	NA	16971819	16969882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_16969900_16971800
ENSMUSG00000038967.14_0	chr11	-	2256	11	FSM	ENSMUSG00000038967.14	ENSMUST00000038431.8	2246	11	-13	3	-13	-3	multi-exon	FALSE	canonical	3	33	junction_1	6.12290780593665	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTGCTGCCTGGCTTCCT	6061	False	NA	-4	True	NA	NA	NA	94932193	94917086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_94918149_94918690_94918805_94919304_94919413_94919523_94919623_94919747_94919825_94920479_94920558_94920742_94920833_94922661_94922847_94923290_94923363_94930174_94930317_94931964
ENSMUSG00000038967.14_2	chr11	-	2004	10	NNC	ENSMUSG00000038967.14	novel	2246	11	NA	NA	-3565	-8	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_9	12.0369800568452	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGACTGCTGCCTGGC	NA	False	NA	-9	True	NA	NA	NA	94923815	94917091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_94918149_94918690_94918805_94919304_94919413_94919523_94919623_94919747_94919825_94920479_94920558_94920742_94920833_94922661_94922847_94923290_94923363_94923691
ENSMUSG00000038967.14_4	chr11	-	3264	9	NIC	ENSMUSG00000038967.14	novel	2246	11	NA	NA	11	-13	intron_retention	FALSE	canonical	3	33	junction_3	6.2236946422523	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGAAATGTGACTGCTGC	6085	False	NA	-14	True	NA	NA	NA	94932169	94917096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_94919413_94919523_94919623_94919747_94919825_94920479_94920558_94920742_94920833_94922661_94922847_94923290_94923363_94930174_94930317_94931964
ENSMUSG00000038967.14_5	chr11	-	2141	10	NIC	ENSMUSG00000038967.14	novel	2246	11	NA	NA	-10	-1	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	12.0185042515466	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGCCTGGCTTCCTTG	6064	False	NA	-2	True	NA	NA	NA	94932190	94917084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_94918149_94919304_94919413_94919523_94919623_94919747_94919825_94920479_94920558_94920742_94920833_94922661_94922847_94923290_94923363_94930174_94930317_94931964
ENSMUSG00000038970.8_0	chr5	+	8171	14	FSM	ENSMUSG00000038970.8	ENSMUST00000041804.8	8114	14	-64	7	-64	-7	multi-exon	FALSE	canonical	3	41	junction_10	10.2628185108664	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATAATCTCTGTTGCTAC	NA	False	NA	NA	False	AATAAA	-16	NA	144037189	144125015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_144037595_144066170_144066296_144070953_144071099_144080343_144080418_144084413_144084533_144085095_144085184_144093678_144093813_144101423_144101509_144103115_144103238_144108554_144108705_144110426_144113296_144119554_144119688_144119999_144120240_144121533
ENSMUSG00000038970.8_10	chr5	+	3822	3	ISM	ENSMUSG00000038970.8	ENSMUST00000041804.8	8114	14	82334	7	82334	-7	3prime_fragment	FALSE	canonical	3	45	junction_2	15	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATAATCTCTGTTGCTAC	NA	False	NA	NA	False	AATAAA	-16	NA	144119587	144125015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144119688_144119999_144120240_144121533
ENSMUSG00000038970.8_12	chr5	+	2466	1	ISM	ENSMUSG00000038970.8	ENSMUST00000041804.8	8114	14	85297	6	85297	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAATCTCTGTTGCTACA	NA	False	NA	NA	False	AATAAA	-17	NA	144122550	144125016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144122600_144125000
ENSMUSG00000038970.8_2	chr5	+	4362	11	ISM	ENSMUSG00000038970.8	ENSMUST00000041804.8	8114	14	-64	11681	-64	-11681	5prime_fragment	FALSE	canonical	3	41	junction_10	8.8068155425216	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGTCTGATTTGATTT	NA	False	NA	NA	False	AAAAAG	-12	NA	144037189	144113341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144037595_144066170_144066296_144070953_144071099_144080343_144080418_144084413_144084533_144085095_144085184_144093678_144093813_144101423_144101509_144103115_144103238_144108554_144108705_144110426
ENSMUSG00000038970.8_3	chr5	+	8169	14	NNC	ENSMUSG00000038970.8	novel	8114	14	NA	NA	-65	-7	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	16.0413666433687	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATAATCTCTGTTGCTAC	NA	False	NA	NA	False	AATAAA	-16	NA	144037188	144125015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_144037595_144066170_144066296_144070953_144071099_144080346_144080418_144084413_144084533_144085095_144085184_144093678_144093813_144101423_144101509_144103115_144103238_144108554_144108705_144110426_144113296_144119554_144119688_144119999_144120240_144121533
ENSMUSG00000038970.8_9	chr5	+	5121	4	ISM	ENSMUSG00000038970.8	ENSMUST00000041804.8	8114	14	74776	7	74776	-7	3prime_fragment	FALSE	canonical	3	45	junction_3	12.5698050899765	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATAATCTCTGTTGCTAC	NA	False	NA	NA	False	AATAAA	-16	NA	144112029	144125015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144113296_144119554_144119688_144119999_144120240_144121533
ENSMUSG00000038975.15_0	chr3	-	1570	9	FSM	ENSMUSG00000038975.15_ENSMUSG00000065463.3	ENSMUST00000200209.5	1169	9	-122	-279	1	0	multi-exon	FALSE	canonical	3	607	junction_3	165.057565715722	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTTGTGTATATAG	6906	False	NA	-6	True	AATAAA	-42	NA	153617840	153612929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
ENSMUSG00000038975.15_1	chr3	-	1314	9	FSM	ENSMUSG00000038975.15	ENSMUST00000089950.11	1381	9	57	10	3	-6	multi-exon	FALSE	canonical	3	355	junction_5	268.62508724987	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCAGTGGCTGTTGTGT	6157	False	NA	-12	True	AATAAA	-36	NA	153618589	153612935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUSG00000038975.15_15	chr3	-	1435	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	9	-1	combination_of_known_junctions	FALSE	canonical	3	72	junction_9	287.574145028528	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTTGTGTATATAGCTT	6163	False	NA	-3	True	AATAAA	-45	NA	153618583	153612926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUSG00000038975.15_22	chr3	-	1450	8	FSM	ENSMUSG00000038975.15_ENSMUSG00000065463.3	ENSMUST00000196956.5	1055	8	-122	-273	1	-6	multi-exon	FALSE	canonical	3	355	junction_5	265.52827590696	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCAGTGGCTGTTGTGT	6906	False	NA	-12	True	AATAAA	-36	NA	153617840	153612935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561
ENSMUSG00000038975.15_24	chr3	-	1410	10	FSM	ENSMUSG00000038975.15	ENSMUST00000198350.5	1399	10	-19	8	9	-6	multi-exon	FALSE	canonical	3	72	junction_9	303.195735987477	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCAGTGGCTGTTGTGT	6163	False	NA	-12	True	AATAAA	-36	NA	153618583	153612935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUSG00000038975.15_3	chr3	-	1418	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	217.717962306997	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTTGTGTATATAG	6157	False	NA	-6	True	AATAAA	-42	NA	153618589	153612929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUSG00000038975.15_5	chr3	-	1555	9	FSM	ENSMUSG00000038975.15_ENSMUSG00000065463.3	ENSMUST00000196266.5	1271	9	-123	-161	0	0	multi-exon	FALSE	canonical	3	426	junction_3	203.564140690348	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTTGTGTATATAG	6905	False	NA	-6	True	AATAAA	-42	NA	153617841	153612929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
ENSMUSG00000038975.15_53	chr3	-	1281	8	FSM	ENSMUSG00000038975.15	ENSMUST00000167111.6	1418	8	112	25	0	-21	multi-exon	FALSE	canonical	3	355	junction_5	235.209329261041	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAATAAAGGTCAAAAT	7076	False	NA	-27	True	AATAAA	-21	NA	153617670	153612950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561
ENSMUSG00000038975.15_6	chr3	-	1403	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	240.631627694519	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTTGTGTATATAG	6156	False	NA	-6	True	AATAAA	-42	NA	153618590	153612929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUSG00000038975.15_7	chr3	-	2070	8	ISM	ENSMUSG00000038975.15	ENSMUST00000196266.5	1271	9	392	-155	344	-6	3prime_fragment	FALSE	canonical	3	426	junction_3	214.481719881358	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCAGTGGCTGTTGTGT	7420	False	NA	-12	True	AATAAA	-36	NA	153617326	153612935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327
ENSMUSG00000038976.13_1	chr11	+	3772	10	FSM	ENSMUSG00000038976.13	ENSMUST00000038696.12	4508	10	731	5	731	-5	multi-exon	FALSE	canonical	3	26	junction_2	8.0691456246068	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCGTCGCCTGGTTT	NA	False	NA	15	True	CATAAA	-11	NA	94882591	94897720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_94883745_94887360_94887494_94888819_94888941_94891032_94891138_94892044_94892181_94892667_94892821_94892904_94892959_94895386_94895617_94895846_94895944_94896130
ENSMUSG00000038976.13_10	chr11	+	1355	1	ISM	ENSMUSG00000038976.13	ENSMUST00000038696.12	4508	10	14505	5	9476	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCGTCGCCTGGTTT	NA	False	NA	15	True	CATAAA	-11	NA	94896365	94897720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94896400_94897700
ENSMUSG00000038976.13_4	chr11	+	2547	9	FSM	ENSMUSG00000038976.13	ENSMUST00000107748.2	3095	9	543	5	543	-5	multi-exon	FALSE	canonical	3	26	junction_1	8.14612638006556	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCGTCGCCTGGTTT	NA	False	NA	15	True	CATAAA	-11	NA	94887432	94897720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_94887494_94888819_94888941_94891032_94891138_94892044_94892181_94892667_94892821_94892904_94892959_94895386_94895617_94895846_94895944_94896130
ENSMUSG00000038976.13_5	chr11	+	2454	8	ISM	ENSMUSG00000038976.13	ENSMUST00000107748.2	3095	9	1960	7	1960	-7	3prime_fragment	FALSE	canonical	3	44	junction_1	3.36852174930046	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGAGCCTCGTCGCCTGGT	NA	False	NA	13	True	CATAAA	-9	NA	94888849	94897718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94888941_94891032_94891138_94892044_94892181_94892667_94892821_94892904_94892959_94895386_94895617_94895846_94895944_94896130
ENSMUSG00000038976.13_6	chr11	+	2327	7	ISM	ENSMUSG00000038976.13	ENSMUST00000107748.2	3095	9	4178	8	4178	-8	3prime_fragment	FALSE	canonical	3	45	junction_5	2.98607881119482	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGAGCCTCGTCGCCTGG	NA	False	NA	12	True	CATAAA	-8	NA	94891067	94897717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94891138_94892044_94892181_94892667_94892821_94892904_94892959_94895386_94895617_94895846_94895944_94896130
ENSMUSG00000038976.13_7	chr11	+	2225	6	ISM	ENSMUSG00000038976.13	ENSMUST00000107748.2	3095	9	5189	6	5189	-6	3prime_fragment	FALSE	canonical	3	45	junction_4	3.03315017762062	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGCCTCGTCGCCTGGTT	NA	False	NA	14	True	CATAAA	-10	NA	94892078	94897719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94892181_94892667_94892821_94892904_94892959_94895386_94895617_94895846_94895944_94896130
ENSMUSG00000038976.13_8	chr11	+	2093	5	ISM	ENSMUSG00000038976.13	ENSMUST00000107748.2	3095	9	5809	5	5809	-5	3prime_fragment	FALSE	canonical	3	45	junction_3	2.54950975679639	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCGTCGCCTGGTTT	NA	False	NA	15	True	CATAAA	-11	NA	94892698	94897720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94892821_94892904_94892959_94895386_94895617_94895846_94895944_94896130
ENSMUSG00000038976.13_9	chr11	+	1830	3	ISM	ENSMUSG00000038976.13	ENSMUST00000107748.2	3095	9	8584	5	8584	-5	3prime_fragment	FALSE	canonical	3	45	junction_1	3.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCGTCGCCTGGTTT	NA	False	NA	15	True	CATAAA	-11	NA	94895473	94897720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94895617_94895846_94895944_94896130
ENSMUSG00000038982.11_0	chr13	-	1722	5	FSM	ENSMUSG00000038982.11	ENSMUST00000035899.8	5634	5	46	3866	-2	-3866	multi-exon	FALSE	canonical	3	63	junction_3	8.98262211161084	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAATAAGTATTTGAGAT	NA	False	NA	-29	True	ATTAAA	-14	NA	38819039	38786682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_38788005_38796618_38796678_38803065_38803196_38814968_38815052_38818911
ENSMUSG00000038982.11_1	chr13	-	1660	4	NIC	ENSMUSG00000038982.11	novel	5634	5	NA	NA	-1	-3868	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	34.6538437823121	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGAAATAAGTATTTGAG	NA	False	NA	-31	True	ATTAAA	-12	NA	38819038	38786684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_38788005_38803065_38803196_38814968_38815052_38818911
ENSMUSG00000038982.11_2	chr13	-	1039	1	ISM	ENSMUSG00000038982.11	ENSMUST00000035899.8	5634	5	31367	3863	31319	-3863	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAGTATTTGAGATTTC	NA	False	NA	-26	True	ATTAAA	-17	NA	38787718	38786679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_38786700_38787700
ENSMUSG00000038984.5_0	chr15	-	3968	1	FSM	ENSMUSG00000038984.5	ENSMUST00000042021.5	4010	1	39	3	39	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCATTGTATTTAATATT	NA	False	NA	NA	False	AATAAA	-16	NA	33687991	33684023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_33684000_33688000
ENSMUSG00000038990.15_0	chr2	-	2946	10	FSM	ENSMUSG00000038990.15	ENSMUST00000108891.2	2975	10	24	5	-9	-2	multi-exon	FALSE	canonical	0	0	junction_5	39.9001841018062	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATACTTCCTTGCTTGTC	NA	False	NA	-6	True	AGTAAA	-13	NA	179915265	179900337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_179901977_179902067_179902273_179902436_179902544_179902869_179902974_179903308_179903475_179903909_179904019_179904870_179904949_179906006_179906100_179906195_179906268_179914892
ENSMUSG00000038990.15_1	chr2	-	2879	9	NIC	ENSMUSG00000038990.15	novel	2975	10	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	51.4823999052103	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATACTTCCTTGCTTGTC	NA	False	NA	-6	True	AGTAAA	-13	NA	179915270	179900337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_179901977_179902067_179902273_179902436_179902544_179902869_179902974_179903308_179903475_179903909_179904019_179904870_179904949_179906006_179906100_179914892
ENSMUSG00000038990.15_10	chr2	-	2859	9	NIC	ENSMUSG00000038990.15	novel	2975	10	NA	NA	2	-2	combination_of_known_splicesites	FALSE	canonical	2	15	junction_5	37.5091655465701	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATACTTCCTTGCTTGTC	NA	False	NA	-6	True	AGTAAA	-13	NA	179915287	179900337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_179901977_179902067_179902273_179902436_179902544_179902869_179902974_179903308_179903475_179904870_179904949_179906006_179906100_179906195_179906268_179914892
ENSMUSG00000038990.15_2	chr2	-	3715	8	NIC	ENSMUSG00000038990.15	novel	2975	10	NA	NA	-8	-2	intron_retention	FALSE	canonical	3	108	junction_6	11.3999641961486	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATACTTCCTTGCTTGTC	NA	False	NA	-6	True	AGTAAA	-13	NA	179915264	179900337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_179901977_179902067_179902273_179902436_179902544_179902869_179904019_179904870_179904949_179906006_179906100_179906195_179906268_179914892
ENSMUSG00000038991.18_0	chr13	-	2622	10	FSM	ENSMUSG00000038991.18	ENSMUST00000035988.16	2843	10	23	198	23	0	multi-exon	FALSE	canonical	3	973	junction_6	103.236992125933	2138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAAAAGTCTGGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	38712443	38684252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043_38697141_38702958_38703065_38707304_38707455_38712163
ENSMUSG00000039000.9_0	chr5	+	4792	23	FSM	ENSMUSG00000039000.9	ENSMUST00000049453.9	5048	23	-14	270	-14	-270	multi-exon	FALSE	canonical	0	0	junction_10	108.11846884684	989	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTGTAGTCTTGATACA	NA	False	NA	1	True	AATAAA	-12	NA	29774225	29880820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_29774579_29792272_29792327_29794885_29794961_29795807_29795955_29802066_29802183_29803856_29804015_29805638_29805793_29806129_29806351_29807193_29807346_29811904_29812093_29819905_29819993_29824225_29824384_29824552_29824786_29836189_29836295_29837747_29837836_29840628_29840727_29842635_29842769_29851407_29851656_29863207_29863421_29868460_29868650_29868773_29868841_29872911_29873043_29879396
ENSMUSG00000039001.13_0	chr2	+	348	6	FSM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	37	9	-4	-6	multi-exon	FALSE	canonical	3	3954	junction_5	1417.02976680097	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTAAGTCTGCTTTTGC	NA	False	NA	17	True	AATAAA	-18	NA	179899206	179900229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ENSMUSG00000039001.13_11	chr2	+	318	5	ISM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	240	9	199	-6	3prime_fragment	FALSE	canonical	3	3954	junction_4	1482.42763314099	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTAAGTCTGCTTTTGC	NA	False	NA	17	True	AATAAA	-18	NA	179899409	179900229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ENSMUSG00000039001.13_18	chr2	+	158	3	ISM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	638	9	597	-6	3prime_fragment	FALSE	canonical	3	3954	junction_2	1375	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTAAGTCTGCTTTTGC	NA	False	NA	17	True	AATAAA	-18	NA	179899807	179900229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_179899851_179900022_179900079_179900170
ENSMUSG00000039004.7_0	chr13	+	3448	7	FSM	ENSMUSG00000039004.7	ENSMUST00000171970.3	3593	7	14	131	14	-131	multi-exon	FALSE	canonical	1	4	junction_1	1.15470053837925	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACTGTACTTACAGCCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	38529096	38684147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_38530564_38653589_38653783_38668866_38669016_38669714_38669913_38681270_38681348_38682692_38682804_38682894
ENSMUSG00000039004.7_4	chr13	+	1115	1	ISM	ENSMUSG00000039004.7	ENSMUST00000171970.3	3593	7	153952	129	104614	-129	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTACTTACAGCCTTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	38683034	38684149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_38683000_38684100
ENSMUSG00000039016.6_0	chr9	+	489	2	FSM	ENSMUSG00000039016.6	ENSMUST00000044051.6	518	2	27	2	27	-2	multi-exon	FALSE	canonical	3	1341	junction_1	0	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTGTTCTTCTAAATC	8840	False	NA	19	True	AATAAA	-13	NA	50515236	50516618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_50515340_50516232
ENSMUSG00000039016.6_1	chr9	+	1271	1	NIC	ENSMUSG00000039016.6	novel	518	2	NA	NA	138	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTGTTCTTCTAAATC	8951	False	NA	19	True	AATAAA	-13	NA	50515347	50516618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_50515300_50516600
ENSMUSG00000039018.16_0	chr7	+	1349	11	NNC	ENSMUSG00000039018.16	novel	1595	11	NA	NA	-16	159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	150.393783116191	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAATCTCTCTCTGG	NA	False	NA	21	True	AATAAA	-22	NA	139717545	139730519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_139717687_139718231_139718297_139720105_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
ENSMUSG00000039031.17_0	chr10	+	3527	15	FSM	ENSMUSG00000039031.17	ENSMUST00000039557.9	3651	15	24	100	24	90	multi-exon	FALSE	canonical	3	7	junction_6	3.14934395500694	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAATCTTCTCTTGGAAT	NA	False	NA	3	True	ATTAAA	-12	NA	26648496	26794544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_26648693_26721927_26722125_26725870_26726107_26730869_26730934_26736552_26736729_26745916_26746083_26748668_26748761_26753152_26753231_26754886_26755047_26756683_26756767_26763776_26763984_26765727_26765869_26788602_26788728_26792388_26792451_26793000
ENSMUSG00000039033.12_0	chr2	-	2479	14	FSM	ENSMUSG00000039033.12	ENSMUST00000046656.9	2480	14	1	0	1	0	multi-exon	FALSE	canonical	3	23	junction_13	23.0823070642491	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908679	139675399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908406
ENSMUSG00000039033.12_1	chr2	-	2231	14	FSM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	26	1	6	-1	multi-exon	FALSE	canonical	3	37	junction_3	20.460092487948	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGTGTGTGACTGCTTG	NA	False	NA	NA	False	AATAAA	-17	NA	139908699	139675400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
ENSMUSG00000039033.12_7	chr2	-	2072	7	NIC	ENSMUSG00000039033.12	novel	2127	13	NA	NA	4	306	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	30.799080072842	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAATAATAGGTATTTTC	NA	False	NA	NA	False	AATAAA	-8	NA	139908701	139818145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_139819634_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
ENSMUSG00000039033.12_8	chr2	-	1853	8	ISM	ENSMUSG00000039033.12	ENSMUST00000099304.4	2127	13	5	143044	5	8	5prime_fragment	FALSE	canonical	3	57	junction_2	18.1186565254081	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGTTTGCCCATTCTTT	NA	False	NA	NA	False	NA	NA	NA	139908700	139818443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
ENSMUSG00000039033.12_9	chr2	-	2322	7	NIC	ENSMUSG00000039033.12	novel	2480	14	NA	NA	-2	308	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	35.7572836403065	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATAATAGGTATTTTCTC	NA	False	NA	NA	False	AATAAA	-10	NA	139908682	139818143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_139819634_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908406
ENSMUSG00000039041.16_2	chr2	+	1408	10	FSM	ENSMUSG00000039041.16	ENSMUST00000061437.5	1535	10	124	3	3	1	multi-exon	FALSE	canonical	3	1931	junction_6	170.679108342794	1816	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTATGGTCTGGGCCTGT	NA	False	NA	-1	True	AATAAA	-19	NA	179813401	179818076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816740_179816952_179817186_179817390_179817549_179817646_179817750_179817866
ENSMUSG00000039043.6_2	chr7	-	1687	6	FSM	ENSMUSG00000039043.6	ENSMUST00000048731.6	2277	6	81	509	81	-509	multi-exon	FALSE	canonical	3	36	junction_1	5.76194411635517	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTAGTGCTCCATGCTT	9974	False	NA	-7	True	AATAAA	-15	NA	79585026	79575617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79576599_79577373_79577538_79577919_79578127_79579320_79579454_79581550_79581627_79584900
ENSMUSG00000039046.16_2	chr2	+	4817	15	FSM	ENSMUSG00000039046.16	ENSMUST00000114937.8	7484	15	84	2583	-21	313	multi-exon	FALSE	canonical	3	91	junction_4	18.797660514445	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGAGAAATAATATTGAC	4738	False	NA	NA	False	AATAAA	-8	NA	6327561	6448618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_6327766_6341178_6341271_6395865_6395934_6399283_6399367_6405090_6405131_6413739_6413821_6419743_6419852_6425713_6425824_6428232_6428282_6429082_6429204_6431705_6431801_6432362_6432429_6432522_6432623_6435236_6435390_6445171
ENSMUSG00000039046.16_27	chr2	+	2097	1	ISM	ENSMUSG00000039046.16	ENSMUST00000114937.8	7484	15	119058	2569	20803	327	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGACAAAGTGATTCAAAA	NA	False	NA	NA	False	AATAAA	-22	NA	6446535	6448632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_6446500_6448600
ENSMUSG00000039046.16_28	chr2	+	1121	1	ISM	ENSMUSG00000039046.16	ENSMUST00000114937.8	7484	15	122601	2	24346	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCGATGCAGCCTTGACT	NA	False	NA	8	True	ATTAAA	-18	NA	6450078	6451199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_6450100_6451200
ENSMUSG00000039046.16_6	chr2	+	7414	14	NIC	ENSMUSG00000039046.16	novel	7484	15	NA	NA	-24	-11	combination_of_known_junctions	FALSE	canonical	2	7	junction_3	34.0551241267734	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAACCTTCTGCGATGCA	4630	False	NA	-1	True	ATTAAA	-9	NA	6327453	6451190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_6327766_6341178_6341271_6395865_6395934_6405090_6405131_6413739_6413821_6419743_6419852_6425713_6425824_6428232_6428282_6429082_6429204_6431705_6431801_6432362_6432429_6432522_6432623_6435236_6435390_6445171
ENSMUSG00000039047.18_0	chr3	+	1526	11	FSM	ENSMUSG00000039047.18	ENSMUST00000159899.8	4737	11	13	3198	0	-20	multi-exon	FALSE	canonical	3	317	junction_8	39.6252444787411	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAATTACTTCCGTTC	3970	False	NA	13	True	AGTAAA	-17	NA	152419749	152491465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032
ENSMUSG00000039047.18_6	chr3	+	4259	12	NNC	ENSMUSG00000039047.18	novel	1761	12	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	119.183863792167	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGGAAAAGAAAACCTTT	3970	False	NA	NA	False	NA	NA	NA	152419749	152494648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032_152491870_152492319
ENSMUSG00000039047.18_8	chr3	+	4468	12	NNC	ENSMUSG00000039047.18	novel	1761	12	NA	NA	1	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	119.183863792167	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGGAAAAGAAAACCTTT	3971	False	NA	NA	False	NA	NA	NA	152419750	152494648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032_152491870_152492109
ENSMUSG00000039048.16_0	chr9	-	2163	11	FSM	ENSMUSG00000039048.16	ENSMUST00000127996.8	2289	11	111	15	2	-15	multi-exon	TRUE	canonical	3	179	junction_9	18.9747200242849	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGCAG	NA	False	NA	NA	False	NA	NA	NA	35122240	35115518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
ENSMUSG00000039048.16_40	chr9	-	2159	11	FSM	ENSMUSG00000039048.16	ENSMUST00000043805.15	2232	11	56	17	-2	-17	multi-exon	FALSE	canonical	1	3	junction_1	62.4467773387867	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAAGGC	NA	False	NA	NA	False	NA	NA	NA	35122220	35115520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_35116438_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
ENSMUSG00000039048.16_5	chr9	-	2058	10	NIC	ENSMUSG00000039048.16	novel	2289	11	NA	NA	1	-15	combination_of_known_splicesites	FALSE	canonical	1	3	junction_8	66.2654594122089	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGCAG	NA	False	NA	NA	False	NA	NA	NA	35122249	35115518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35121240_35121462_35122102
ENSMUSG00000039050.9_0	chr2	+	2777	14	FSM	ENSMUSG00000039050.9	ENSMUST00000040668.9	2805	14	21	7	-8	-7	multi-exon	FALSE	canonical	3	166	junction_6	20.3809866146027	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCCAACATGGGTTGAA	NA	False	NA	3	True	ATTAAA	-9	NA	179761119	179804466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_179761263_179778771_179778906_179780005_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821_179800913_179803281
ENSMUSG00000039050.9_1	chr2	+	2744	14	NNC	ENSMUSG00000039050.9	novel	2805	14	NA	NA	-2	-7	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	46.788963448571	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCCAACATGGGTTGAA	NA	False	NA	3	True	ATTAAA	-9	NA	179761125	179804466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_179761263_179778771_179778906_179780032_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821_179800913_179803281
ENSMUSG00000039050.9_3	chr2	+	2922	22	Fusion	ENSMUSG00000039041.16_ENSMUSG00000039050.9	novel	2805	14	NA	NA	-10	1	multi-exon	TRUE	canonical	3	32	junction_13	1017.85081256734	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTATGGTCTGGGCCTGT	NA	False	NA	-1	True	AATAAA	-19	NA	179761117	179818076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_179761263_179778771_179778906_179780005_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821_179800913_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816740_179816952_179817186_179817390_179817549_179817646_179817750_179817866
ENSMUSG00000039055.5_1	chr11	-	2267	10	NNC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	-63	-4	at_least_one_novel_splicesite	TRUE	canonical	3	39	junction_7	78.9567782999419	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGGAGCTTGGAGGA	4633	False	NA	-9	True	AATAAA	-14	NA	94544560	94535825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540288_94540346_94540833_94540965_94541048_94541850_94544521
ENSMUSG00000039055.5_13	chr11	-	2171	8	ISM	ENSMUSG00000039055.5	ENSMUST00000039949.5	2444	9	2939	6	-319	-6	3prime_fragment	FALSE	canonical	3	186	junction_6	30.6860335178925	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTGTGGAGCTTGGAG	7342	False	NA	-11	True	AATAAA	-12	NA	94541851	94535827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048
ENSMUSG00000039055.5_5	chr11	-	2207	9	FSM	ENSMUSG00000039055.5	ENSMUST00000039949.5	2444	9	231	6	-62	-6	multi-exon	FALSE	canonical	3	178	junction_8	32.4422563950167	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTGTGGAGCTTGGAG	4634	False	NA	-11	True	AATAAA	-12	NA	94544559	94535827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
ENSMUSG00000039059.12_1	chr2	-	3679	2	FSM	ENSMUSG00000039059.12	ENSMUST00000166392.2	1040	2	-1131	-1508	22	-11	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTGCTGACTTTTGGGG	NA	False	NA	NA	False	AATAAA	-13	NA	179746259	179741268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_179743210_179744521
ENSMUSG00000039062.16_0	chr7	-	3777	21	FSM	ENSMUSG00000039062.16	ENSMUST00000107392.8	3797	21	13	7	-4	-6	multi-exon	FALSE	canonical	1	4	junction_7	3.71853465763061	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGAGCTTCCAGACTTG	6813	False	NA	-8	True	AATAAA	-9	NA	79497945	79471557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79472125_79475050_79475133_79475453_79475595_79476339_79476508_79476618_79476730_79477319_79477412_79483334_79483483_79484877_79484934_79485034_79485169_79485716_79485791_79485978_79486155_79487989_79488056_79488160_79488227_79488394_79488539_79488635_79488750_79488910_79489066_79489149_79489277_79490620_79490758_79490833_79490977_79491385_79492409_79497892
ENSMUSG00000039062.16_2	chr7	-	3841	22	NIC	ENSMUSG00000039062.16	novel	3797	21	NA	NA	4	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_20	4.91192265075338	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGAGCTTCCAGACTTG	6831	False	NA	-8	True	AATAAA	-9	NA	79497927	79471557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_79472125_79475050_79475133_79475453_79475595_79476339_79476508_79476618_79476730_79477319_79477412_79483334_79483483_79484877_79484934_79485034_79485169_79485716_79485791_79485978_79486155_79487989_79488056_79488160_79488227_79488394_79488539_79488635_79488750_79488910_79489066_79489149_79489277_79490620_79490758_79490833_79490977_79491385_79492409_79492774_79492857_79497892
ENSMUSG00000039062.16_4	chr7	-	1631	4	ISM	ENSMUSG00000039062.16	ENSMUST00000107392.8	3797	21	13	18795	-4	1458	5prime_fragment	FALSE	canonical	1	5	junction_3	2.82842712474619	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGTGCCTTGCTTTTAAT	6813	False	NA	NA	False	NA	NA	NA	79497945	79490345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_79490758_79490833_79490977_79491385_79492409_79497892
ENSMUSG00000039065.12_0	chr15	+	1130	5	FSM	ENSMUSG00000039065.12	ENSMUST00000042702.7	1164	5	13	21	13	-21	multi-exon	FALSE	canonical	3	10	junction_1	6.68954408012983	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGAGTGCCATTTAGCT	128	False	NA	6	True	ATTAAA	-6	NA	31602276	31617660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_31602296_31606056_31606335_31608241_31608380_31609711_31609763_31617016
ENSMUSG00000039065.12_1	chr15	+	673	2	FSM	ENSMUSG00000039065.12	ENSMUST00000160146.2	4655	2	269	3713	3	-21	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGAGTGCCATTTAGCT	118	False	NA	6	True	ATTAAA	-6	NA	31602266	31617660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_31602296_31617016
ENSMUSG00000039065.12_4	chr15	+	1268	6	FSM	ENSMUSG00000039065.12	ENSMUST00000161061.3	2364	6	13	1083	13	-9	multi-exon	FALSE	canonical	0	0	junction_1	11.3490087672889	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAGCTTTATAACCGTGA	128	False	NA	18	True	ATTAAA	-18	NA	31602276	31617672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_31602296_31603594_31603721_31606056_31606335_31608241_31608380_31609711_31609763_31617016
ENSMUSG00000039067.6_0	chr8	-	1546	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	35	0	29	0	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	2342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTGTCCTAGTGGTT	NA	False	NA	-6	True	ATTAAA	-14	NA	108315061	108307012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
ENSMUSG00000039068.17_3	chr3	+	4247	14	FSM	ENSMUSG00000039068.17	ENSMUST00000106100.9	7607	14	8	3352	8	0	multi-exon	FALSE	canonical	3	170	junction_1	24.8676972569618	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAAGCTTGTTGTGGAT	NA	False	NA	17	True	AATAAA	-26	NA	152101647	152165111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_152101776_152125651_152125778_152128254_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
ENSMUSG00000039068.17_33	chr3	+	4195	14	FSM	ENSMUSG00000039068.17	ENSMUST00000106101.2	7539	14	-8	3352	2	0	multi-exon	FALSE	canonical	0	0	junction_1	63.1683202752023	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAAGCTTGTTGTGGAT	NA	False	NA	17	True	AATAAA	-26	NA	152102322	152165111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_152102399_152125651_152125778_152128254_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
ENSMUSG00000039068.17_4	chr3	+	4090	13	NIC	ENSMUSG00000039068.17	novel	7607	14	NA	NA	8	-3	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	61.537420864598	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATAGAAAGCTTGTTGTG	NA	False	NA	14	True	AATAAA	-23	NA	152101647	152165108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_152101776_152125651_152125778_152132913_152134470_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
ENSMUSG00000039068.17_58	chr3	+	3063	11	ISM	ENSMUSG00000039068.17	ENSMUST00000106101.2	7539	14	31356	3355	-7849	-3	3prime_fragment	FALSE	canonical	3	190	junction_1	22.9017466582791	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATAGAAAGCTTGTTGTG	NA	False	NA	14	True	AATAAA	-23	NA	152133686	152165108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_152134470_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
ENSMUSG00000039068.17_70	chr3	+	3527	1	ISM	ENSMUSG00000039068.17	ENSMUST00000106100.9	7607	14	63288	9	1874	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAATCATCCTGGCTTCC	NA	False	NA	4	True	AATAAA	-6	NA	152164927	152168454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_152164900_152168500
ENSMUSG00000039068.17_8	chr3	+	4238	14	NIC	ENSMUSG00000039068.17	novel	7607	14	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_6	52.5803977243618	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAAGCTTGTTGTGGAT	NA	False	NA	17	True	AATAAA	-26	NA	152101653	152165111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_152101776_152125651_152125778_152128254_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154652_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
ENSMUSG00000039068.17_9	chr3	+	4317	15	NIC	ENSMUSG00000039068.17	novel	7607	14	NA	NA	-4	-3	combination_of_known_splicesites	FALSE	canonical	2	16	junction_4	74.0165797752953	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATAGAAAGCTTGTTGTG	NA	False	NA	14	True	AATAAA	-23	NA	152101635	152165108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_152101776_152125651_152125778_152128254_152128409_152132913_152134470_152152265_152152327_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
ENSMUSG00000039069.20_0	chr2	+	1691	10	NIC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_3	39.9749921826134	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179712386	179727688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ENSMUSG00000039069.20_1	chr2	+	1721	10	FSM	ENSMUSG00000039069.20	ENSMUST00000184862.8	1730	10	2	7	2	0	multi-exon	FALSE	canonical	3	26	junction_8	58.7703208880465	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179712386	179727688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726106_179726243_179726383_179727172
ENSMUSG00000039069.20_11	chr2	+	1597	9	NIC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	53.7558136390847	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179712386	179727688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_179712409_179713586_179713680_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ENSMUSG00000039069.20_40	chr2	+	1671	9	NIC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_2	38.3305931991666	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179713584	179727688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ENSMUSG00000039069.20_51	chr2	+	168	1	ISM	ENSMUSG00000039069.20	ENSMUST00000142608.8	2339	5	9640	208	1609	-208	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATTTTTTAAAAATG	NA	False	NA	NA	False	NA	NA	NA	179722024	179722192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_179722000_179722200
ENSMUSG00000039069.20_7	chr2	+	1458	8	NIC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	60.3080527333605	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179712386	179727688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_179712409_179713586_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ENSMUSG00000039081.11_0	chr14	-	2890	2	ISM	ENSMUSG00000039081.11	ENSMUST00000043409.9	4216	3	1727	339	1727	-339	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAATGAAAACGAC	NA	False	NA	NA	False	NA	NA	NA	22037942	22034365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_22036585_22037271
ENSMUSG00000039086.10_0	chr2	+	4119	11	FSM	ENSMUSG00000039086.10	ENSMUST00000041126.9	4343	11	220	4	220	-4	multi-exon	FALSE	canonical	3	19	junction_4	6.29603049547888	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACCTCATTTCTGTTTAT	NA	False	NA	14	True	ATTAAA	-15	NA	179684521	179711990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_179684662_179694256_179694334_179695101_179695187_179696811_179696957_179697493_179697692_179699377_179699543_179699880_179699983_179701128_179701222_179703702_179703823_179705063_179705192_179709124
ENSMUSG00000039086.10_11	chr2	+	3376	6	ISM	ENSMUSG00000039086.10	ENSMUST00000041126.9	4343	11	15177	1	15177	-1	3prime_fragment	FALSE	canonical	3	28	junction_3	3.96988664825584	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCATTTCTGTTTATTGA	NA	False	NA	17	True	ATTAAA	-18	NA	179699478	179711993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_179699543_179699880_179699983_179701128_179701222_179703702_179703823_179705063_179705192_179709124
ENSMUSG00000039086.10_17	chr2	+	2530	1	ISM	ENSMUSG00000039086.10	ENSMUST00000041126.9	4343	11	25159	4	25159	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACCTCATTTCTGTTTAT	NA	False	NA	14	True	ATTAAA	-15	NA	179709460	179711990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_179709500_179712000
ENSMUSG00000039087.18_10	chr13	+	4484	10	NIC	ENSMUSG00000039087.18	novel	7437	10	NA	NA	-132	-2	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	19.6920739836559	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGACAGTGGTCATAGG	NA	False	NA	11	True	AATAAA	-11	NA	38009818	38116665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_38010029_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533
ENSMUSG00000039087.18_14	chr13	+	8667	13	FSM	ENSMUSG00000039087.18	ENSMUST00000128570.9	8436	13	-242	11	35	0	multi-exon	FALSE	canonical	3	20	junction_1	29.1099448451708	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGGCACACGACCAA	NA	False	NA	-5	True	AATAAA	-11	NA	38010048	38135970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_38010321_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38125518_38125681_38130832_38131640_38132618
ENSMUSG00000039087.18_15	chr13	+	4551	10	FSM	ENSMUSG00000039087.18	ENSMUST00000110238.10	7437	10	32	2854	32	0	multi-exon	FALSE	canonical	3	20	junction_1	27.5053305720281	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGACAGTGGTCATAGGCT	NA	False	NA	13	True	AATAAA	-13	NA	38010045	38116667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_38010321_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533
ENSMUSG00000039087.18_32	chr13	+	5090	3	ISM	ENSMUSG00000039087.18	ENSMUST00000124268.8	9702	12	43125	8	-15457	0	3prime_fragment	FALSE	canonical	3	18	junction_1	21	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGGCACACGACCAA	6709	False	NA	-5	True	AATAAA	-11	NA	38115534	38135970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_38116466_38130832_38131640_38132618
ENSMUSG00000039087.18_33	chr13	+	4947	4	NIC	ENSMUSG00000039087.18	novel	8395	12	NA	NA	-15311	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_3	17.7826382244655	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGGCACACGACCAA	6855	False	NA	-5	True	AATAAA	-11	NA	38115680	38135970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_38116466_38125518_38125681_38130832_38131481_38132618
ENSMUSG00000039087.18_36	chr13	+	5267	4	ISM	ENSMUSG00000039087.18	ENSMUST00000037232.8	8395	12	42673	0	-15472	0	3prime_fragment	FALSE	canonical	3	43	junction_1	7.03957069398096	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGGCACACGACCAA	6694	False	NA	-5	True	AATAAA	-11	NA	38115519	38135970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_38116466_38125518_38125681_38130832_38131640_38132618
ENSMUSG00000039087.18_38	chr13	+	3818	2	ISM	ENSMUSG00000039087.18	ENSMUST00000037232.8	8395	12	58327	0	182	0	3prime_fragment	FALSE	canonical	3	60	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGGCACACGACCAA	NA	False	NA	-5	True	AATAAA	-11	NA	38131173	38135970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_38131640_38132618
ENSMUSG00000039087.18_39	chr13	+	3547	2	FSM	ENSMUSG00000039087.18	ENSMUST00000162849.2	1053	2	294	-2788	294	0	multi-exon	FALSE	canonical	2	12	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGGCACACGACCAA	NA	False	NA	-5	True	AATAAA	-11	NA	38131285	38135970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_38131481_38132618
ENSMUSG00000039087.18_4	chr13	+	8456	12	NIC	ENSMUSG00000039087.18	novel	8395	12	NA	NA	-145	0	combination_of_known_junctions	TRUE	canonical	3	18	junction_10	28.9242384557992	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGGCACACGACCAA	NA	False	NA	-5	True	AATAAA	-11	NA	38009805	38135970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_38010029_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38130832_38131640_38132618
ENSMUSG00000039087.18_40	chr13	+	2430	1	ISM	ENSMUSG00000039087.18	ENSMUST00000128570.9	8436	13	123250	11	2549	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGGCACACGACCAA	NA	False	NA	-5	True	AATAAA	-11	NA	38133540	38135970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_38133500_38136000
ENSMUSG00000039087.18_9	chr13	+	8599	13	NIC	ENSMUSG00000039087.18	novel	8395	12	NA	NA	-126	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_10	24.8678451463375	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACGGCACACGACCAA	NA	False	NA	-5	True	AATAAA	-11	NA	38009824	38135970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_38010029_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38125518_38125681_38130832_38131640_38132618
ENSMUSG00000039089.16_1	chr10	-	4398	22	NIC	ENSMUSG00000039089.16	novel	4572	22	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_21	6.02037357305871	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTTTTTATATATGTA	NA	False	NA	-11	True	AATAAA	-12	NA	26251988	26150368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_26152162_26155514_26155578_26155835_26156312_26158677_26158758_26168538_26168692_26178550_26178654_26179520_26179636_26189744_26189856_26191389_26191476_26194274_26194352_26203584_26203737_26206072_26206165_26207717_26207854_26212130_26212236_26213665_26213758_26215116_26215202_26216805_26216939_26218405_26218566_26220074_26220150_26220509_26220622_26228156_26228274_26251906
ENSMUSG00000039089.16_2	chr10	-	3691	16	ISM	ENSMUSG00000039089.16	ENSMUST00000105519.10	4500	21	34781	1	-22999	-1	3prime_fragment	FALSE	canonical	3	22	junction_8	5.23662316977479	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTTTTTATATATGTATG	NA	False	NA	-9	True	AATAAA	-14	NA	26215171	26150366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_26152162_26155514_26155578_26155835_26156312_26158677_26158758_26168538_26168692_26178550_26178654_26179520_26179636_26189744_26189856_26191389_26191476_26194274_26194352_26203584_26203737_26206072_26206165_26207717_26207854_26212130_26212236_26213665_26213758_26215116
ENSMUSG00000039089.16_4	chr10	-	4735	22	FSM	ENSMUSG00000039089.16	ENSMUST00000040219.13	4572	22	-163	0	-163	0	multi-exon	TRUE	canonical	2	5	junction_21	7.32838422979453	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTTTTTATATATGTA	NA	False	NA	-11	True	AATAAA	-12	NA	26250115	26150368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_26152162_26155514_26155578_26155835_26156312_26158677_26158758_26168538_26168692_26178550_26178654_26179520_26179636_26189744_26189856_26191389_26191476_26194274_26194352_26203584_26203737_26206072_26206165_26207717_26207854_26212130_26212236_26213665_26213758_26215116_26215202_26216805_26216939_26218405_26218566_26220074_26220150_26220509_26220622_26228156_26228274_26249696
ENSMUSG00000039089.16_7	chr10	-	4413	22	FSM	ENSMUSG00000039089.16	ENSMUST00000174766.2	3411	22	-21	-981	-21	0	multi-exon	FALSE	canonical	2	4	junction_21	7.47998084079664	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTTTTTATATATGTA	NA	False	NA	-11	True	AATAAA	-12	NA	26251202	26150368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_26152162_26155514_26155578_26155835_26156312_26158677_26158758_26168538_26168692_26178550_26178654_26179520_26179636_26189744_26189856_26191389_26191476_26194274_26194352_26203584_26203737_26206072_26206165_26207717_26207854_26212130_26212236_26213665_26213758_26215116_26215202_26216805_26216939_26218405_26218566_26220074_26220150_26220509_26220622_26228156_26228274_26251105
ENSMUSG00000039095.9_0	chr5	+	3557	2	FSM	ENSMUSG00000039095.9	ENSMUST00000036177.9	3539	2	4	-22	4	22	multi-exon	FALSE	canonical	3	25	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATAAAATGTTGGGATGG	2433	False	NA	NA	False	AATAAA	-16	NA	28370695	28377186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_28372183_28375116
ENSMUSG00000039095.9_1	chr5	+	2197	2	NNC	ENSMUSG00000039095.9	novel	3539	2	NA	NA	2478	22	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATAAAATGTTGGGATGG	79	False	NA	NA	False	AATAAA	-16	NA	28373169	28377186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_28373297_28375116
ENSMUSG00000039095.9_2	chr5	+	1107	1	Genic_Genomic	ENSMUSG00000039095.9	novel	NA	NA	NA	NA	5388	22	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATAAAATGTTGGGATGG	2989	False	NA	NA	False	AATAAA	-16	NA	28376079	28377186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_+_28376100_28377200
ENSMUSG00000039096.11_13	chr11	-	2236	8	NIC	ENSMUSG00000039096.11	novel	4143	9	NA	NA	-173	-2032	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	14.1997413026162	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTATACTCTATGTATGT	3485	False	NA	NA	False	NA	NA	NA	94439791	94432655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_94433474_94433706_94433811_94434119_94434175_94434380_94434529_94434930_94434995_94435245_94435612_94439003_94439190_94439296
ENSMUSG00000039096.11_2	chr11	-	2091	9	FSM	ENSMUSG00000039096.11	ENSMUST00000040487.4	4143	9	-10	2062	-10	-2062	multi-exon	FALSE	canonical	3	12	junction_3	10.3319891598859	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCAAGGCCACTTGTTGT	3241	False	NA	NA	False	NA	NA	NA	94440035	94432685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_94433474_94433706_94433811_94434119_94434175_94434380_94434529_94434930_94434995_94435245_94435612_94438984_94439190_94439296_94439431_94439808
ENSMUSG00000039096.11_6	chr11	-	2209	8	ISM	ENSMUSG00000039096.11	ENSMUST00000040487.4	4143	9	236	2076	-171	-2076	3prime_fragment	FALSE	canonical	3	12	junction_3	10.4295498562537	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATATTTTTATCCA	3487	False	NA	NA	False	NA	NA	NA	94439789	94432699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_94433474_94433706_94433811_94434119_94434175_94434380_94434529_94434930_94434995_94435245_94435612_94438984_94439190_94439296
ENSMUSG00000039100.11_0	chr15	-	2442	1	ISM	ENSMUSG00000039100.11	ENSMUST00000090227.6	6260	26	72711	10	13649	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCTTGTTTTCTTTTTGG	9487	False	NA	NA	False	AATAAA	-15	NA	31458488	31456046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_31456000_31458500
ENSMUSG00000039100.11_10	chr15	-	4393	9	ISM	ENSMUSG00000039100.11	ENSMUST00000090227.6	6260	26	50703	10	-8359	-10	3prime_fragment	FALSE	canonical	3	87	junction_6	21.9342055930914	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCTTGTTTTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	31480496	31456046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_31459426_31462087_31462224_31465399_31465533_31467835_31467926_31469688_31469824_31471762_31471945_31475891_31475962_31478440_31478643_31480430
ENSMUSG00000039100.11_2	chr15	-	6226	26	FSM	ENSMUSG00000039100.11	ENSMUST00000090227.6	6260	26	24	10	24	-10	multi-exon	FALSE	canonical	3	82	junction_10	16.0775122453693	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCTTGTTTTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	31531175	31456046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_31459426_31462087_31462224_31465399_31465533_31467835_31467926_31469688_31469824_31471762_31471945_31475891_31475962_31478440_31478643_31480430_31480569_31482643_31482745_31482949_31483070_31485091_31485227_31486069_31486145_31486227_31486297_31486500_31486582_31488937_31488997_31490721_31490774_31492884_31492918_31494216_31494279_31496149_31496340_31498719_31498889_31501061_31501135_31502865_31503010_31505830_31505905_31509871_31509969_31530948
ENSMUSG00000039100.11_3	chr15	-	5047	15	ISM	ENSMUSG00000039100.11	ENSMUST00000090227.6	6260	26	44618	9	-14444	-9	3prime_fragment	FALSE	canonical	3	82	junction_10	19.318490666526	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTGTTTTCTTTTTGGC	NA	False	NA	NA	False	AATAAA	-16	NA	31486581	31456045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_31459426_31462087_31462224_31465399_31465533_31467835_31467926_31469688_31469824_31471762_31471945_31475891_31475962_31478440_31478643_31480430_31480569_31482643_31482745_31482949_31483070_31485091_31485227_31486069_31486145_31486227_31486297_31486500
ENSMUSG00000039100.11_6	chr15	-	4278	8	ISM	ENSMUSG00000039100.11	ENSMUST00000090227.6	6260	26	52607	9	-6455	-9	3prime_fragment	FALSE	canonical	3	87	junction_6	21.879073964659	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTGTTTTCTTTTTGGC	NA	False	NA	NA	False	AATAAA	-16	NA	31478592	31456045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_31459426_31462087_31462224_31465399_31465533_31467835_31467926_31469688_31469824_31471762_31471945_31475891_31475962_31478440
ENSMUSG00000039100.11_8	chr15	-	4743	12	ISM	ENSMUSG00000039100.11	ENSMUST00000090227.6	6260	26	46051	10	-13011	-10	3prime_fragment	FALSE	canonical	3	82	junction_10	21.0163258066966	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCTTGTTTTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	31485148	31456046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_31459426_31462087_31462224_31465399_31465533_31467835_31467926_31469688_31469824_31471762_31471945_31475891_31475962_31478440_31478643_31480430_31480569_31482643_31482745_31482949_31483070_31485091
ENSMUSG00000039103.13_3	chr3	-	2693	12	NIC	ENSMUSG00000039103.13	novel	2564	13	NA	NA	-70	-7	intron_retention	TRUE	canonical	1	2	junction_4	2.09288444240388	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAAAGGTCCTTTTCTTT	NA	False	NA	NA	False	AATAAA	-12	NA	151971502	151942625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_151943660_151943883_151944070_151948295_151948518_151949462_151949661_151952722_151952912_151953569_151953741_151953816_151954006_151955296_151955339_151958444_151958594_151958687_151958767_151960921_151961003_151971349
ENSMUSG00000039105.7_0	chr4	+	1011	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	72	52	72	-52	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	1189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACCCTCCTGGCTCCTTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	63463080	63468935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_63463237_63466821_63466923_63468181
ENSMUSG00000039106.7_0	chr5	+	3731	2	NNC	ENSMUSG00000039106.7	novel	5376	2	NA	NA	-11375	-683	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTCTAGTTTTTATTTTA	2862	False	NA	NA	False	AATAAA	-17	NA	28035771	28059403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_28035851_28055751
ENSMUSG00000039106.7_1	chr5	+	3332	2	FSM	ENSMUSG00000039106.7	ENSMUST00000036227.7	5376	2	628	1416	628	-1416	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAATAGAAAATTTGTGA	NA	False	NA	NA	False	NA	NA	NA	28047774	28058670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_28048188_28055751
ENSMUSG00000039106.7_2	chr5	+	2355	1	ISM	ENSMUSG00000039106.7	ENSMUST00000036227.7	5376	2	9901	684	9901	-684	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTCTAGTTTTTATTTT	NA	False	NA	NA	False	AATAAA	-16	NA	28057047	28059402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_28057000_28059400
ENSMUSG00000039108.15_0	chr2	+	2659	10	NIC	ENSMUSG00000039108.15	novel	2534	9	NA	NA	-10	-2	combination_of_known_junctions	TRUE	canonical	3	24	junction_3	16.1176232049821	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGCTGCCTCTGTCCGTC	NA	False	NA	13	True	AATAAA	-14	NA	179666769	179677252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_179667106_179668427_179668592_179669692_179669829_179670750_179670868_179673153_179673322_179673586_179673665_179673853_179674016_179674293_179674445_179675478_179675664_179676090
ENSMUSG00000039108.15_1	chr2	+	2542	9	FSM	ENSMUSG00000039108.15	ENSMUST00000055485.12	2534	9	-10	2	-10	-2	multi-exon	FALSE	canonical	3	38	junction_3	10.2705586508232	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGCTGCCTCTGTCCGTC	NA	False	NA	13	True	AATAAA	-14	NA	179666769	179677252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_179667106_179668427_179668592_179669692_179669829_179673153_179673322_179673586_179673665_179673853_179674016_179674293_179674445_179675478_179675664_179676090
ENSMUSG00000039108.15_18	chr2	+	619	1	ISM	ENSMUSG00000039108.15	ENSMUST00000055485.12	2534	9	9854	2	6932	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGCTGCCTCTGTCCGTC	NA	False	NA	13	True	AATAAA	-14	NA	179676633	179677252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_179676600_179677300
ENSMUSG00000039115.14_0	chr9	+	3750	28	FSM	ENSMUSG00000039115.14	ENSMUST00000044165.14	7020	28	12	3258	12	22	multi-exon	TRUE	canonical	2	4	junction_19	2.10688335604858	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCAAGCACTGAAATCTTG	NA	False	NA	NA	False	ATTAAA	-15	NA	118435769	118726813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_118436184_118455515_118455644_118457206_118457314_118465570_118465695_118481564_118481633_118487533_118487664_118490415_118490502_118492937_118493007_118497679_118497818_118500766_118500873_118501877_118501973_118510003_118510095_118510802_118510849_118518337_118518493_118527381_118527543_118598159_118598310_118613169_118613247_118636232_118636384_118661801_118661889_118663363_118663444_118670160_118670251_118672556_118672666_118679766_118679875_118698358_118698485_118700888_118701009_118706189_118706292_118716831_118716952_118726301
ENSMUSG00000039116.8_0	chr10	-	5011	24	FSM	ENSMUSG00000039116.8	ENSMUST00000238680.2	4482	24	-281	-248	-138	248	multi-exon	FALSE	canonical	3	20	junction_19	18.4758566210825	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGACATTCC	NA	False	NA	-13	True	NA	NA	NA	14421061	14280057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_14281183_14285416_14285570_14286199_14286302_14296169_14296454_14298416_14298514_14302479_14302749_14303833_14303962_14307349_14307457_14308664_14308711_14310021_14310142_14312523_14312665_14314163_14314336_14315353_14315565_14316081_14316138_14317136_14317249_14319749_14319893_14323806_14323873_14324561_14324615_14326322_14326409_14333823_14333893_14342876_14343501_14344506_14344849_14411597_14411699_14420657
ENSMUSG00000039116.8_17	chr10	-	5185	26	NIC	ENSMUSG00000039116.8	novel	6507	25	NA	NA	-184	246	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	26.6923209931246	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAAAAAAAAAAGACATT	NA	False	NA	-15	True	TTTAAA	-44	NA	14421107	14280059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_14281183_14283609_14283656_14285416_14285570_14286199_14286302_14296169_14296454_14298416_14298514_14302479_14302749_14303833_14303962_14307349_14307457_14308664_14308711_14310021_14310142_14312523_14312665_14314163_14314336_14315353_14315565_14316081_14316138_14317136_14317249_14319749_14319893_14323806_14323873_14324561_14324615_14326322_14326409_14331881_14331966_14333823_14333893_14342876_14343501_14344506_14344849_14411597_14411699_14420657
ENSMUSG00000039116.8_2	chr10	-	5104	25	NIC	ENSMUSG00000039116.8	novel	6507	25	NA	NA	-147	248	combination_of_known_junctions	FALSE	canonical	3	71	junction_20	10.9657769395921	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGACATTCC	NA	False	NA	-13	True	NA	NA	NA	14421070	14280057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_14281183_14285416_14285570_14286199_14286302_14296169_14296454_14298416_14298514_14302479_14302749_14303833_14303962_14307349_14307457_14308664_14308711_14310021_14310142_14312523_14312665_14314163_14314336_14315353_14315565_14316081_14316138_14317136_14317249_14319749_14319893_14323806_14323873_14324561_14324615_14326322_14326409_14331881_14331966_14333823_14333893_14342876_14343501_14344506_14344849_14411597_14411699_14420657
ENSMUSG00000039116.8_3	chr10	-	3249	4	ISM	ENSMUSG00000039116.8	ENSMUST00000238680.2	4482	24	124462	-1968	124421	-11	3prime_fragment	FALSE	canonical	3	97	junction_3	2.49443825784929	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTCCAAATTATTCAGT	NA	False	NA	-13	True	AATAAA	-14	NA	14296318	14278337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_14281183_14285416_14285570_14286199_14286302_14296169
ENSMUSG00000039116.8_5	chr10	-	2197	1	ISM	ENSMUSG00000039116.8	ENSMUST00000041168.6	6507	25	140252	5	140211	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATTATTCAGTTCCTTT	NA	False	NA	-7	True	AATAAA	-20	NA	14280528	14278331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_14278300_14280500
ENSMUSG00000039117.17_0	chr2	-	4332	16	NNC	ENSMUSG00000039117.17	novel	4380	15	NA	NA	-28	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	27.0541843138707	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTCACGCCTGCTTTTC	NA	False	NA	-1	True	ATTAAA	-16	NA	179618467	179553945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069_179571218_179573808_179574019_179574755_179574846_179576821_179576945_179577684_179577805_179580203_179580324_179581586_179581748_179617205_179618088_179618162
ENSMUSG00000039117.17_1	chr2	-	4364	16	NNC	ENSMUSG00000039117.17	novel	4416	15	NA	NA	-24	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	30.2364019023428	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTCACGCCTGCTTTTC	NA	False	NA	-1	True	ATTAAA	-16	NA	179618463	179553945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069_179571218_179573772_179574019_179574755_179574846_179576821_179576945_179577684_179577805_179580203_179580324_179581586_179581748_179617205_179618088_179618162
ENSMUSG00000039117.17_2	chr2	-	1166	1	ISM	ENSMUSG00000039117.17	ENSMUST00000041618.13	4416	15	63327	2	8889	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCACGCCTGCTTTT	NA	False	NA	-2	True	ATTAAA	-15	NA	179555112	179553946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_179553900_179555100
ENSMUSG00000039117.17_25	chr2	-	4440	15	FSM	ENSMUSG00000039117.17	ENSMUST00000041618.13	4416	15	-26	2	-26	-2	multi-exon	FALSE	canonical	3	23	junction_8	22.5641941390083	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCACGCCTGCTTTT	NA	False	NA	-2	True	ATTAAA	-15	NA	179618465	179553946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069_179571218_179573772_179574019_179574755_179574846_179576821_179576945_179577684_179577805_179580203_179580324_179581586_179581748_179617205
ENSMUSG00000039117.17_3	chr2	-	4404	15	FSM	ENSMUSG00000039117.17	ENSMUST00000227325.2	4380	15	-25	1	-25	-1	multi-exon	FALSE	canonical	3	58	junction_8	16.8935744335785	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTCACGCCTGCTTTTC	NA	False	NA	-1	True	ATTAAA	-16	NA	179618464	179553945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069_179571218_179573808_179574019_179574755_179574846_179576821_179576945_179577684_179577805_179580203_179580324_179581586_179581748_179617205
ENSMUSG00000039117.17_6	chr2	-	4118	16	NNC	ENSMUSG00000039117.17	novel	4380	15	NA	NA	-29	-2	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_15	24.7328840929552	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCACGCCTGCTTTT	NA	False	NA	-2	True	ATTAAA	-15	NA	179618468	179553946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069_179571218_179573808_179574019_179574755_179574846_179576821_179576945_179577684_179577805_179580203_179580324_179581586_179581748_179617205_179618088_179618376
ENSMUSG00000039126.11_0	chr19	+	4145	9	FSM	ENSMUSG00000039126.11	ENSMUST00000223920.2	1803	9	3	-2345	3	-3	multi-exon	FALSE	canonical	3	57	junction_3	14.3352711868315	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACATTGTGGTTTCCTCTT	NA	False	NA	-1	True	AATAAA	-11	NA	17114132	17201293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594_17185694_17198147
ENSMUSG00000039126.11_1	chr19	+	3974	8	NIC	ENSMUSG00000039126.11	novel	2115	11	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	3	21	junction_3	24.5165500119775	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACATTGTGGTTTCCTCTT	NA	False	NA	-1	True	AATAAA	-11	NA	17114129	17201293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_17114256_17145626_17145707_17156153_17156355_17176476_17176580_17177144_17177277_17179005_17179093_17185594_17185694_17198147
ENSMUSG00000039126.11_2	chr19	+	4105	10	NNC	ENSMUSG00000039126.11	novel	2115	11	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	27.992062366956	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACATTGTGGTTTCCTCTT	NA	False	NA	-1	True	AATAAA	-11	NA	17114134	17201293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594_17185694_17198147_17200048_17200085
ENSMUSG00000039126.11_21	chr19	+	1910	1	ISM	ENSMUSG00000039126.11	ENSMUST00000087689.5	12512	20	265904	1	7708	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTGGTTTCCTCTTTC	NA	False	NA	1	True	AATAAA	-13	NA	17199385	17201295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_17199400_17201300
ENSMUSG00000039126.11_4	chr19	+	1145	8	ISM	ENSMUSG00000039126.11	ENSMUST00000223920.2	1803	9	10	13102	1	-1649	5prime_fragment	FALSE	canonical	3	57	junction_3	14.2427926635594	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTAAAAATTGCTATTCT	NA	False	NA	4	True	AATAAA	-16	NA	17114139	17185846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594
ENSMUSG00000039128.14_0	chr2	-	1244	13	FSM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	206	377	-17	-6	multi-exon	FALSE	canonical	3	980	junction_5	82.7531050105607	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATAAGGAAGCCTACTG	NA	False	NA	-13	True	AATAAA	-9	NA	5849769	5799481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_3	chr2	-	1209	12	NIC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-15	-6	combination_of_known_splicesites	FALSE	canonical	3	91	junction_9	296.801433468727	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATAAGGAAGCCTACTG	NA	False	NA	-13	True	AATAAA	-9	NA	5849767	5799481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_39	chr2	-	995	8	NIC	ENSMUSG00000039128.14	novel	600	7	NA	NA	-17	-8	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	373.173538445478	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGTAACTGGTCATCATT	NA	False	NA	-6	True	AATACA	-10	NA	5849769	5814373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_5814830_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039130.19_0	chr6	-	1802	10	FSM	ENSMUSG00000039130.19	ENSMUST00000080812.14	1824	10	14	8	1	0	multi-exon	FALSE	canonical	1	382	junction_8	221.210865270177	1254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTCCTGCTGCTAGAGA	5	True	NA	-15	True	AATAAA	-10	NA	30391008	30366386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373483_30374763_30374919_30375937_30376066_30381779_30381864_30382535_30382687_30387419_30387532_30390855
ENSMUSG00000039131.16_0	chr3	-	1350	6	FSM	ENSMUSG00000039131.16	ENSMUST00000046614.10	1596	6	240	6	-240	-4	multi-exon	FALSE	canonical	3	17	junction_3	6.40624695121879	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACAGCTTTGTGGGTATT	NA	False	NA	NA	False	CATAAA	-11	NA	151871627	151799481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151871284
ENSMUSG00000039137.19_1	chr4	-	2092	7	FSM	ENSMUSG00000039137.19	ENSMUST00000155058.8	2537	7	443	2	443	-2	multi-exon	FALSE	canonical	3	12	junction_3	6.0184900284226	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGGCCAGTGTTCTATG	NA	False	NA	-9	True	AATAAA	-16	NA	63351116	63333148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_63333904_63334238_63334362_63334648_63334831_63336324_63336860_63337658_63337731_63350086_63350297_63350901
ENSMUSG00000039137.19_15	chr4	-	2852	7	FSM	ENSMUSG00000039137.19	ENSMUST00000063672.10	2804	7	-51	3	-51	-3	multi-exon	FALSE	canonical	3	23	junction_2	9.97357620025145	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGACAAAACAAGAACTCCAT	4427	False	NA	NA	False	AATAAA	-16	NA	63414279	63349672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_63350297_63350901_63351115_63352346_63352384_63353596_63353800_63379518_63379645_63390886_63391106_63412849
ENSMUSG00000039137.19_18	chr4	-	2088	4	FSM	ENSMUSG00000039137.19	ENSMUST00000133425.2	797	4	-1292	1	-60	-1	multi-exon	FALSE	canonical	3	16	junction_1	15.1070255914995	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGTGTAATGAAACTCAC	4418	False	NA	NA	False	AATAAA	-14	NA	63414288	63378400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_63378705_63379518_63379645_63390886_63391106_63412849
ENSMUSG00000039137.19_19	chr4	-	4598	3	NNC	ENSMUSG00000039137.19	novel	2741	12	NA	NA	-67	-7516	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	25.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTTGCTTTTTCTTTGTG	4411	False	NA	NA	False	NA	NA	NA	63414295	63386572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_63389506_63390886_63391106_63412849
ENSMUSG00000039137.19_25	chr4	-	4556	5	ISM	ENSMUSG00000039137.19	ENSMUST00000155058.8	2537	7	10933	9	9540	-9	3prime_fragment	FALSE	canonical	3	12	junction_3	6.64736790015417	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGGGGGCCAGTG	3763	False	NA	-16	True	AATAAA	-9	NA	63340626	63333155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_63333904_63334238_63334362_63334648_63334831_63336324_63336860_63337658
ENSMUSG00000039137.19_3	chr4	-	4093	12	FSM	ENSMUSG00000039137.19	ENSMUST00000102867.8	4013	12	-89	9	-49	-9	multi-exon	FALSE	canonical	2	8	junction_3	11.3705433554579	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGGGGGCCAGTG	4429	False	NA	-16	True	AATAAA	-9	NA	63414277	63333155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_63333904_63334238_63334362_63334648_63334828_63336324_63336860_63337658_63337731_63350086_63350297_63350901_63351115_63352346_63352384_63353596_63353800_63379518_63379645_63390886_63391106_63412849
ENSMUSG00000039137.19_36	chr4	-	3532	8	ISM	ENSMUSG00000039137.19	ENSMUST00000084510.8	4049	13	-115	13139	-75	-2337	5prime_fragment	FALSE	canonical	3	5	junction_1	13.763305250868	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACTGGAATTCAGAGGAC	4403	False	NA	NA	False	AATAAA	-11	NA	63414303	63346285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_63347356_63350086_63350297_63350901_63351115_63352346_63352384_63353596_63353800_63379518_63379645_63390886_63391106_63412849
ENSMUSG00000039137.19_4	chr4	-	4098	12	FSM	ENSMUSG00000039137.19	ENSMUST00000063650.10	4016	12	-91	9	-51	-9	multi-exon	FALSE	canonical	3	12	junction_3	10.7826000023147	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGGGGGCCAGTG	4427	False	NA	-16	True	AATAAA	-9	NA	63414279	63333155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_63333904_63334238_63334362_63334648_63334831_63336324_63336860_63337658_63337731_63350086_63350297_63350901_63351115_63352346_63352384_63353596_63353800_63379518_63379645_63390886_63391106_63412849
ENSMUSG00000039137.19_7	chr4	-	4129	13	NIC	ENSMUSG00000039137.19	novel	4049	13	NA	NA	-52	-9	combination_of_known_junctions	FALSE	canonical	2	5	junction_6	13.5428845606179	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGGGGGCCAGTG	4426	False	NA	-16	True	AATAAA	-9	NA	63414280	63333155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_63333904_63334238_63334362_63334648_63334828_63336324_63336860_63337658_63337731_63347322_63347356_63350086_63350297_63350901_63351115_63352346_63352384_63353596_63353800_63379518_63379645_63390886_63391106_63412849
ENSMUSG00000039138.2_0	chr2	+	3178	3	FSM	ENSMUSG00000039138.2	ENSMUST00000041998.2	737	3	20	-2461	20	2461	multi-exon	FALSE	canonical	3	53	junction_2	6	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAATGCCTGTCTTAGC	NA	False	NA	4	True	NA	NA	NA	179056748	179061136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_179056894_179057552_179057714_179058264
ENSMUSG00000039138.2_1	chr2	+	2122	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	18	2464	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	26.5	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCCTGTCTTAGCTGC	NA	False	NA	7	True	NA	NA	NA	179056746	179061139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_179056894_179057552_179057714_179059325
ENSMUSG00000039145.17_0	chr2	-	3672	1	ISM	ENSMUSG00000039145.17	ENSMUST00000044009.14	6962	11	417381	6	378912	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGATGTGGGTTGTCTGT	4546	False	NA	-5	True	AATAAA	-15	NA	5301945	5298273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_5298300_5301900
ENSMUSG00000039145.17_1	chr2	-	6680	11	FSM	ENSMUSG00000039145.17	ENSMUST00000114987.4	1295	11	38	-5423	38	-7	multi-exon	FALSE	canonical	3	40	junction_3	6.22976725086901	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGATGTGGGTTGTCTG	1215	False	NA	-6	True	AATAAA	-14	NA	5680819	5298274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_5303913_5306306_5306425_5308101_5308190_5315802_5315882_5317899_5318013_5343992_5344069_5359479_5359607_5366799_5366939_5449880_5449956_5570459_5570592_5680724
ENSMUSG00000039145.17_6	chr2	-	6970	11	FSM	ENSMUSG00000039145.17	ENSMUST00000044009.14	6962	11	-19	11	-19	-11	multi-exon	FALSE	canonical	3	18	junction_10	11.2977873939989	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTTTGGATGTGGGTTG	NA	False	NA	-10	True	AATAAA	-10	NA	5719345	5298278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_5303913_5306306_5306425_5308101_5308190_5315802_5315882_5317899_5318013_5343992_5344069_5359479_5359607_5366799_5366939_5449880_5449956_5570459_5570592_5718956
ENSMUSG00000039148.6_1	chr19	-	2527	20	FSM	ENSMUSG00000039148.6	ENSMUST00000044207.5	5091	20	27	2537	27	-1	multi-exon	FALSE	canonical	3	368	junction_1	46.7672968579718	780	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTTGGTTGTGCTGCTGT	9067	False	NA	-9	True	AATAAA	-18	NA	5438704	5430087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237_5431329_5431693_5431782_5431988_5432100_5432213_5432388_5432742_5432886_5432967_5433102_5433182_5433308_5433647_5433855_5433962_5434106_5434191_5434292_5434397_5434476_5434645_5434752_5434850_5434978_5435490_5435547_5435839_5435898_5438342
ENSMUSG00000039156.20_1	chr5	+	3543	12	FSM	ENSMUSG00000039156.20	ENSMUST00000117661.9	4934	12	38	1353	-28	-230	multi-exon	FALSE	canonical	3	168	junction_8	27.7566163655824	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGGTTGTGCTGATTTT	NA	False	NA	14	True	AATAAA	-16	NA	54155878	54277046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_54156377_54210717_54210849_54232621_54232737_54259916_54260029_54260914_54261031_54261734_54261913_54262562_54262741_54267044_54267213_54267878_54267980_54268213_54268453_54273260_54273535_54275613
ENSMUSG00000039156.20_10	chr5	+	2612	6	ISM	ENSMUSG00000039156.20	ENSMUST00000117661.9	4934	12	106720	1136	-149	-13	3prime_fragment	FALSE	canonical	3	168	junction_2	22.9921725811199	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGCATTTAGATTGTG	NA	False	NA	NA	False	TATAAA	-3	NA	54262560	54277263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_54262741_54267044_54267213_54267878_54267980_54268213_54268453_54273260_54273535_54275613
ENSMUSG00000039156.20_13	chr5	+	1379	1	ISM	ENSMUSG00000039156.20	ENSMUST00000117661.9	4934	12	119823	1357	2465	-234	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGGGGTTGTGCTGA	NA	False	NA	10	True	AATAAA	-12	NA	54275663	54277042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_54275700_54277000
ENSMUSG00000039156.20_4	chr5	+	3682	13	FSM	ENSMUSG00000039156.20	ENSMUST00000201469.4	4892	13	-148	1358	-82	-235	multi-exon	TRUE	canonical	3	11	junction_9	82.5821140172347	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTGTGGGGTTGTGCTG	NA	False	NA	9	True	AATAAA	-11	NA	54155758	54277041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_54156377_54210717_54210849_54232621_54232737_54259916_54260029_54260914_54261031_54261734_54261913_54262562_54262741_54267044_54267213_54267457_54267482_54267878_54267980_54268213_54268453_54273260_54273535_54275613
ENSMUSG00000039157.13_0	chr2	+	4255	11	FSM	ENSMUSG00000039157.13	ENSMUST00000048375.6	4223	11	-38	6	-11	0	multi-exon	FALSE	canonical	3	103	junction_7	13.8115893364956	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTTTTTGTTGGTGTTT	1571	False	NA	17	True	ATTAAA	-17	NA	32425332	32459762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32426245_32448038_32448160_32448329_32448360_32450050_32450168_32453430_32453478_32453613_32453772_32455412_32455518_32455599_32455817_32456280_32456403_32456499_32456570_32457406
ENSMUSG00000039157.13_27	chr2	+	2057	1	ISM	ENSMUSG00000039157.13	ENSMUST00000136816.8	5935	10	32362	0	27504	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTTTTTGTTGGTGTTT	1609	False	NA	17	True	ATTAAA	-17	NA	32457705	32459762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32457700_32459800
ENSMUSG00000039158.12_0	chr4	-	5272	23	NNC	ENSMUSG00000039158.12	novel	5387	22	NA	NA	-7341	17669	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11.795520231031	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTACCTCTGTGTGCTG	NA	False	NA	NA	False	AAGAAA	-35	NA	63328932	63267692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_63267741_63285417_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888_63296098_63296806_63296914_63297391_63297612_63298124_63298326_63298435_63298600_63299964_63300167_63300579_63300708_63302123_63302184_63304466_63304622_63305233_63305391_63310368_63310444_63312822_63313872_63316111_63316477_63328903
ENSMUSG00000039158.12_14	chr4	-	4516	22	NNC	ENSMUSG00000039158.12	novel	5387	22	NA	NA	-7341	-764	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_5	7.87947763499926	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAGGAGTGGATGAATGT	NA	False	NA	NA	False	TTTAAA	-19	NA	63328932	63286125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888_63296098_63296806_63296914_63297391_63297612_63298124_63298326_63298435_63298600_63299964_63300167_63300579_63300708_63302123_63302184_63304466_63304622_63305233_63305391_63310368_63310444_63312822_63313872_63316111_63316477_63328903
ENSMUSG00000039158.12_15	chr4	-	2078	7	NIC	ENSMUSG00000039158.12	novel	5387	22	NA	NA	4190	-5	combination_of_known_splicesites	FALSE	canonical	3	11	junction_3	11.0113577727726	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTACCTGTGGCTGTGC	NA	False	NA	NA	False	AATAAA	-33	NA	63295250	63285366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_63286524_63288708_63288890_63289128_63289249_63291559_63291707_63292233_63292350_63292593_63292768_63295067
ENSMUSG00000039158.12_16	chr4	-	2188	8	ISM	ENSMUSG00000039158.12	ENSMUST00000035724.5	5387	22	26317	15	4166	-15	3prime_fragment	FALSE	canonical	3	30	junction_5	4.59369576880387	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATCCCCAAAGCTACCT	NA	False	NA	NA	False	AATAAA	-23	NA	63295274	63285376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067
ENSMUSG00000039158.12_18	chr4	-	2706	12	ISM	ENSMUSG00000039158.12	ENSMUST00000035724.5	5387	22	23438	18	1287	-18	3prime_fragment	FALSE	canonical	3	30	junction_5	7.90647814733051	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAGAAATCCCCAAAGCTA	NA	False	NA	NA	False	AATAAA	-20	NA	63298153	63285379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888_63296098_63296806_63296914_63297391_63297612_63298124
ENSMUSG00000039158.12_22	chr4	-	2420	10	ISM	ENSMUSG00000039158.12	ENSMUST00000035724.5	5387	22	24686	47	2535	-47	3prime_fragment	FALSE	canonical	3	30	junction_5	5.00616903380836	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAATAAATAATGAACTT	NA	False	NA	NA	False	TATAAA	-10	NA	63296905	63285408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888_63296098_63296806
ENSMUSG00000039158.12_28	chr4	-	5010	21	ISM	ENSMUSG00000039158.12	ENSMUST00000035724.5	5387	22	5345	11	5345	-11	3prime_fragment	FALSE	canonical	3	30	junction_5	7.86829079279611	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCCAAAGCTACCTGTGG	NA	False	NA	NA	False	AATAAA	-27	NA	63316246	63285372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888_63296098_63296806_63296914_63297391_63297612_63298124_63298326_63298435_63298600_63299964_63300167_63300579_63300708_63302123_63302184_63304466_63304622_63305233_63305391_63310368_63310444_63312822_63313872_63316111
ENSMUSG00000039158.12_36	chr4	-	1921	7	ISM	ENSMUSG00000039158.12	ENSMUST00000035724.5	5387	22	28901	-2	6750	2	3prime_fragment	FALSE	canonical	3	30	junction_5	4.91313432432789	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCTGTGCTGTGTAT	NA	False	NA	NA	False	AATAAA	-40	NA	63292690	63285359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593
ENSMUSG00000039158.12_49	chr4	-	2259	9	ISM	ENSMUSG00000039158.12	ENSMUST00000035724.5	5387	22	25598	5	3447	-5	3prime_fragment	FALSE	canonical	3	30	junction_5	5.30919014539883	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTACCTGTGGCTGTGC	NA	False	NA	NA	False	AATAAA	-33	NA	63295993	63285366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888
ENSMUSG00000039159.17_0	chr6	-	2969	7	FSM	ENSMUSG00000039159.17	ENSMUST00000102993.10	4657	7	6	1682	-5	-1682	multi-exon	FALSE	canonical	3	201	junction_3	56.6345497220753	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAATTGCTTTTGATATT	9	True	NA	-7	True	AATAAA	-11	NA	30304532	30212969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_30215083_30221666_30221796_30241370_30241424_30242536_30242577_30260927_30261003_30262145_30262223_30304050
ENSMUSG00000039159.17_1	chr6	-	2864	5	FSM	ENSMUSG00000039159.17	ENSMUST00000094543.3	975	5	1	-1890	1	-1682	multi-exon	FALSE	canonical	3	17	junction_2	148.302688782099	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAATTGCTTTTGATATT	21	True	NA	-7	True	AATAAA	-11	NA	30304520	30212969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_30215083_30221666_30221796_30260927_30261003_30262145_30262223_30304050
ENSMUSG00000039159.17_5	chr6	-	1558	1	ISM	ENSMUSG00000039159.17	ENSMUST00000102993.10	4657	7	90015	1678	29279	-1678	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTTTTGATATTGATG	NA	False	NA	-3	True	AATAAA	-15	NA	30214523	30212965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_30213000_30214500
ENSMUSG00000039163.11_0	chr9	-	494	4	FSM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	107	568	93	5	multi-exon	TRUE	canonical	3	173	junction_1	9.03081145609604	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTTCTGATTTATTAAAT	NA	False	NA	-2	True	AATAAA	-18	NA	117979138	117894157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_117894417_117904189_117904281_117944407_117944498_117979084
ENSMUSG00000039164.3_0	chr2	+	2835	2	FSM	ENSMUSG00000039164.3	ENSMUST00000048431.3	4650	2	1816	-1	1816	1	multi-exon	FALSE	canonical	3	24	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACACACTCCTCTTGTC	NA	False	NA	NA	False	ATTAAA	-19	NA	32342284	32346966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32342962_32344808
ENSMUSG00000039166.17_0	chr10	-	2302	8	NIC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	3	110	junction_5	10.3430939199417	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTTTTCTTCTTTTCTTT	NA	False	NA	-2	True	AATAAA	-17	NA	25172976	25044989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_25046301_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790_25159940_25165496_25165629_25172825
ENSMUSG00000039166.17_3	chr10	-	3149	8	NIC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	36.4848305072513	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTCTTCTTTTCTTTC	NA	False	NA	-1	True	AATAAA	-18	NA	25172976	25044988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_25047147_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790_25159940_25165496_25165629_25172825
ENSMUSG00000039168.16_0	chr15	+	1413	4	FSM	ENSMUSG00000039168.16	ENSMUST00000044524.16	1555	4	138	4	-3	-4	multi-exon	FALSE	canonical	3	65	junction_3	1.69967317119759	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTCTCTCTTACGGT	129	False	NA	17	True	AATAAA	-17	NA	31224597	31274483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_31224730_31235918_31236016_31272534_31272578_31273342
ENSMUSG00000039168.16_3	chr15	+	488	1	ISM	ENSMUSG00000039168.16	ENSMUST00000044524.16	1555	4	49539	1	5517	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTCTCTCTTACGGTTCA	793	False	NA	20	True	AATAAA	-20	NA	31273998	31274486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_31274000_31274500
ENSMUSG00000039176.18_0	chr7	-	4518	23	FSM	ENSMUSG00000039176.18	ENSMUST00000073889.14	7837	23	162	3157	-2	-6	multi-exon	FALSE	canonical	3	224	junction_20	45.8324292422727	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGGTCTTGTCTACTGAT	NA	False	NA	-13	True	TATAAA	-13	NA	79115948	79099135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79099786_79100232_79100394_79101289_79101499_79101607_79101777_79101854_79101978_79103452_79103700_79103786_79103923_79104341_79104460_79104558_79104613_79105182_79105344_79105788_79105897_79106182_79106261_79106455_79106577_79107921_79108159_79108921_79109049_79109184_79109334_79109436_79109620_79109805_79109886_79110010_79110158_79110263_79110429_79111445_79111642_79114351_79115120_79115817
ENSMUSG00000039176.18_5	chr7	-	3997	22	ISM	ENSMUSG00000039176.18	ENSMUST00000073889.14	7837	23	1374	3164	1082	-13	3prime_fragment	FALSE	canonical	3	224	junction_20	46.7652020949779	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGACTGGGTCTTGTC	NA	False	NA	-20	True	TATAAA	-6	NA	79114736	79099142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_79099786_79100232_79100394_79101289_79101499_79101607_79101777_79101854_79101978_79103452_79103700_79103786_79103923_79104341_79104460_79104558_79104613_79105182_79105344_79105788_79105897_79106182_79106261_79106455_79106577_79107921_79108159_79108921_79109049_79109184_79109334_79109436_79109620_79109805_79109886_79110010_79110158_79110263_79110429_79111445_79111642_79114351
ENSMUSG00000039178.10_0	chr5	+	1997	21	FSM	ENSMUSG00000039178.10	ENSMUST00000037337.10	2273	21	26	250	-1	-23	multi-exon	FALSE	canonical	3	62	junction_3	8.96994983263563	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAACTTGAAGAAGTAAC	NA	False	NA	-15	True	NA	NA	NA	53966994	54061057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_53967201_53986691_53986765_53987796_53987843_53990311_53990388_53992513_53992589_53993937_53994002_53995265_53995313_53995468_53995580_54003542_54003616_54005503_54005543_54007179_54007293_54014189_54014265_54017485_54017549_54029594_54029680_54032228_54032274_54041003_54041037_54044695_54044806_54046657_54046750_54054332_54054449_54058918_54058990_54060673
ENSMUSG00000039178.10_11	chr5	+	2001	21	FSM	ENSMUSG00000039178.10	ENSMUST00000201958.4	2242	21	15	226	-10	-1	multi-exon	FALSE	canonical	1	1	junction_3	19.8148303045976	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCTTGTCAGTTTGTAA	NA	False	NA	7	True	AATAAA	-17	NA	53967010	54061079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_53967201_53986691_53986765_53987796_53987841_53990311_53990388_53992513_53992589_53993937_53994002_53995265_53995313_53995468_53995580_54003542_54003616_54005503_54005543_54007179_54007293_54014189_54014265_54017485_54017549_54029594_54029680_54032228_54032274_54041003_54041037_54044695_54044806_54046657_54046750_54054332_54054449_54058918_54058990_54060673
ENSMUSG00000039179.14_0	chr16	-	1586	7	FSM	ENSMUSG00000039179.14	ENSMUST00000043415.13	1803	7	210	7	168	-7	multi-exon	FALSE	canonical	2	3	junction_5	2.40947204913349	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTTCTGTCTTTAGGAAA	NA	False	NA	-3	True	AATAAA	-15	NA	10213144	10175818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_10176300_10179121_10179277_10196760_10196984_10200653_10200798_10203926_10203998_10205018_10205103_10212716
ENSMUSG00000039182.7_0	chr13	+	1929	2	FSM	ENSMUSG00000039182.7	ENSMUST00000178289.3	2035	2	97	9	3	-9	multi-exon	FALSE	canonical	3	36	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATTCTGAGGCCTGTT	NA	False	NA	1	True	ATTAAA	-8	NA	14804835	14812779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_14804870_14810884
ENSMUSG00000039182.7_2	chr13	+	1992	2	FSM	ENSMUSG00000039182.7	ENSMUST00000038690.6	2914	2	20	902	-9	-9	multi-exon	FALSE	canonical	3	129	junction_1	0	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATTCTGAGGCCTGTT	NA	False	NA	1	True	ATTAAA	-8	NA	14804852	14812779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_14804950_14810884
ENSMUSG00000039182.7_4	chr13	+	1380	1	ISM	ENSMUSG00000039182.7	ENSMUST00000178289.3	2035	2	6661	9	6538	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATTCTGAGGCCTGTT	NA	False	NA	1	True	ATTAAA	-8	NA	14811399	14812779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_14811400_14812800
ENSMUSG00000039183.7_0	chr17	-	1399	7	FSM	ENSMUSG00000039183.7	ENSMUST00000044252.7	1427	7	21	7	2	0	multi-exon	FALSE	canonical	3	605	junction_4	56.4111888034831	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	-13	True	AGTAAA	-17	NA	25105301	25101592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
ENSMUSG00000039183.7_1	chr17	-	1408	7	FSM	ENSMUSG00000039183.7	ENSMUST00000235055.2	950	7	19	-477	1	0	multi-exon	FALSE	canonical	3	41	junction_5	246.619646419339	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	-13	True	AGTAAA	-17	NA	25105293	25101592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104609_25104692_25104812_25105252
ENSMUSG00000039183.7_10	chr17	-	2363	5	NIC	ENSMUSG00000039183.7	novel	1423	7	NA	NA	2	0	intron_retention	FALSE	canonical	3	632	junction_1	50.0967813337344	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	-13	True	AGTAAA	-17	NA	25105301	25101592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25104812_25105252
ENSMUSG00000039183.7_13	chr17	-	1389	7	NIC	ENSMUSG00000039183.7	novel	1427	7	NA	NA	-1	-1	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	244.594051440341	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATGTGGTCAAGGTGTC	NA	False	NA	-14	True	AGTAAA	-16	NA	25105304	25101593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105264
ENSMUSG00000039183.7_14	chr17	-	1200	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234352.2	1224	6	22	2	2	0	multi-exon	FALSE	canonical	3	81	junction_4	254.082191426318	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	-13	True	AGTAAA	-17	NA	25105301	25101592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104812_25105252
ENSMUSG00000039183.7_15	chr17	-	1353	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234597.2	1434	6	74	7	74	0	multi-exon	TRUE	canonical	3	605	junction_4	61.1391854705311	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	-13	True	AGTAAA	-17	NA	25104814	25101592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692
ENSMUSG00000039187.17_0	chr7	+	4626	38	FSM	ENSMUSG00000039187.17	ENSMUST00000036865.13	4645	38	16	3	16	-3	multi-exon	FALSE	canonical	3	260	junction_14	37.7798783892034	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGTGTAGTTTTGAA	NA	False	NA	9	True	AATAAA	-10	NA	79042075	79100009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79042140_79045640_79045744_79048883_79048957_79051572_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075970_79076874_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944_79085125_79087981_79088149_79089365_79089443_79090378_79090496_79093488_79093541_79093695_79093824_79093905_79093975_79094148_79094258_79094422_79094611_79095284_79095339_79095417_79095478_79097997_79098061_79098567_79098664_79098820_79098929_79099387
ENSMUSG00000039187.17_1	chr7	+	4623	38	NIC	ENSMUSG00000039187.17	novel	4645	38	NA	NA	15	-4	combination_of_known_splicesites	TRUE	canonical	3	30	junction_31	65.5515454678326	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTGGTGTAGTTTTGA	NA	False	NA	8	True	AATAAA	-9	NA	79042074	79100008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_79042140_79045640_79045744_79048883_79048957_79051572_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075970_79076874_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944_79085125_79087981_79088149_79089365_79089443_79090378_79090496_79093488_79093541_79093695_79093824_79093905_79093975_79094148_79094258_79094425_79094611_79095284_79095339_79095417_79095478_79097997_79098061_79098567_79098664_79098820_79098929_79099387
ENSMUSG00000039187.17_64	chr7	+	4560	37	ISM	ENSMUSG00000039187.17	ENSMUST00000036865.13	4645	38	3579	7	-3245	-7	3prime_fragment	FALSE	canonical	3	260	junction_13	38.261879862564	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATTTCTGGTGTAGTTT	NA	False	NA	5	True	AATAAA	-6	NA	79045638	79100005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79045744_79048883_79048957_79051572_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075970_79076874_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944_79085125_79087981_79088149_79089365_79089443_79090378_79090496_79093488_79093541_79093695_79093824_79093905_79093975_79094148_79094258_79094422_79094611_79095284_79095339_79095417_79095478_79097997_79098061_79098567_79098664_79098820_79098929_79099387
ENSMUSG00000039191.13_1	chr5	+	4050	11	FSM	ENSMUSG00000039191.13	ENSMUST00000087360.9	5252	11	-14	1216	-14	5	multi-exon	FALSE	canonical	3	64	junction_1	131.697532247191	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCAATTTCAATATATGA	NA	False	NA	11	True	ATTAAA	-22	NA	53713161	53813484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_53713246_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
ENSMUSG00000039191.13_16	chr5	+	4087	11	FSM	ENSMUSG00000039191.13	ENSMUST00000037618.13	5459	11	157	1215	3	10	multi-exon	FALSE	canonical	3	36	junction_1	139.803576492163	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTCAATATATGATGTAC	NA	False	NA	16	True	ATTAAA	-27	NA	53747712	53813489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_53747829_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
ENSMUSG00000039191.13_20	chr5	+	4001	11	FSM	ENSMUSG00000039191.13	ENSMUST00000113865.5	5440	11	219	1220	219	5	multi-exon	FALSE	canonical	3	158	junction_1	104.823470654239	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCAATTTCAATATATGA	NA	False	NA	11	True	ATTAAA	-22	NA	53748031	53813484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_53748067_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
ENSMUSG00000039191.13_33	chr5	+	3978	10	ISM	ENSMUSG00000039191.13	ENSMUST00000201883.4	4961	11	36401	-16	2305	16	3prime_fragment	FALSE	canonical	3	436	junction_1	37.5055551440939	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATATGATGTACAGGAGT	NA	False	NA	22	True	ATTAAA	-33	NA	53784723	53813495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
ENSMUSG00000039191.13_48	chr5	+	3379	1	ISM	ENSMUSG00000039191.13	ENSMUST00000087360.9	5252	11	98135	11	8231	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGATGCAAACCATTGTAG	1653	False	NA	1	True	AATAAA	-7	NA	53811310	53814689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_53811300_53814700
ENSMUSG00000039193.10_1	chr17	-	981	2	ISM	ENSMUSG00000039193.10	ENSMUST00000234086.2	3154	8	14315	-517	14315	506	3prime_fragment	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTCATATATGCTATTT	NA	False	NA	NA	False	AATAAA	-15	NA	74740886	74733305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_74734130_74740729
ENSMUSG00000039194.17_4	chr7	-	1804	9	NNC	ENSMUSG00000039194.17	novel	2142	9	NA	NA	-153	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	6.8818148042504	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACACTCTTTCATGATGAA	NA	False	NA	-18	True	AATAAA	-19	NA	79036506	79024620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_79025467_79025644_79025711_79026974_79027134_79029706_79029886_79031380_79031586_79033359_79033489_79033681_79033711_79034406_79034528_79036436
ENSMUSG00000039194.17_5	chr7	-	1826	9	FSM	ENSMUSG00000039194.17	ENSMUST00000179243.3	2142	9	313	3	-130	-2	multi-exon	FALSE	canonical	3	11	junction_8	4.45638586749397	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACACTCTTTCATGATGAA	NA	False	NA	-18	True	AATAAA	-19	NA	79036483	79024620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79025467_79025644_79025756_79026974_79027134_79029706_79029886_79031380_79031586_79033359_79033489_79033681_79033711_79034406_79034528_79036436
ENSMUSG00000039195.5_0	chr2	-	603	2	FSM	ENSMUSG00000039195.5	ENSMUST00000048792.5	680	2	69	8	-7	-8	multi-exon	FALSE	canonical	3	268	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTGCCCCCTTCTTCTT	NA	False	NA	-5	True	ATTAAA	-13	NA	32271881	32269120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32269546_32271703
ENSMUSG00000039197.11_1	chr14	+	1749	11	FSM	ENSMUSG00000039197.11	ENSMUST00000045376.11	1782	11	28	5	-9	2	multi-exon	FALSE	canonical	3	304	junction_9	34.7499640287584	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGATTTTTTTTCTGTCTT	NA	False	NA	11	True	AATAAA	-14	NA	21102669	21498632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
ENSMUSG00000039197.11_18	chr14	+	1780	11	FSM	ENSMUSG00000039197.11	ENSMUST00000224069.2	1818	11	40	-2	40	2	multi-exon	FALSE	canonical	3	35	junction_1	100.003199948802	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGATTTTTTTTCTGTCTT	NA	False	NA	11	True	AATAAA	-14	NA	21126259	21498632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_21126390_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
ENSMUSG00000039197.11_3	chr14	+	301	2	FSM	ENSMUSG00000039197.11	ENSMUST00000223558.2	289	2	-9	-3	-9	3	multi-exon	FALSE	canonical	3	60	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGATGATCCATTTTAACA	NA	False	NA	7	True	AATAAA	-18	NA	21102669	21103991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_21102769_21103789
ENSMUSG00000039197.11_8	chr14	+	959	8	NIC	ENSMUSG00000039197.11	novel	1782	11	NA	NA	-9	-3	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	129.691313258421	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTTCTGTTCTTCCCAA	NA	False	NA	NA	False	ATTAAA	-13	NA	21102669	21376858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21376659
ENSMUSG00000039198.9_1	chr11	+	3193	4	FSM	ENSMUSG00000039198.9	ENSMUST00000036690.7	3194	4	1	0	1	0	multi-exon	FALSE	canonical	1	2	junction_2	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAAATTAAGAAAAGTGTT	2485	False	NA	NA	False	ATTAAA	-41	NA	121721073	121734249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_121722086_121722870_121722993_121727206_121727353_121732336
ENSMUSG00000039199.7_4	chr8	-	2246	14	FSM	ENSMUSG00000039199.7	ENSMUST00000212303.2	2056	14	-192	2	-160	0	multi-exon	FALSE	canonical	0	0	junction_10	3.75428748981921	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCTTTTGCGGACTTAAT	NA	False	NA	NA	False	AATAAA	-16	NA	106223694	106199056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106199514_106199622_106199702_106199837_106199932_106200115_106200199_106202655_106202769_106203002_106203162_106203245_106203371_106203648_106203751_106205383_106205560_106210172_106210416_106210820_106211060_106212093_106212141_106214422_106214499_106223441
ENSMUSG00000039200.17_0	chr16	+	2542	11	FSM	ENSMUSG00000039200.17	ENSMUST00000044005.14	2778	11	236	0	1	0	multi-exon	FALSE	canonical	3	57	junction_2	27.1632104140877	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTTTACTGTCTTTTA	NA	False	NA	7	True	AATAAA	-15	NA	10010811	10060915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059409
ENSMUSG00000039200.17_1	chr16	+	2091	6	FSM	ENSMUSG00000039200.17	ENSMUST00000133674.2	2166	6	1	74	1	-74	multi-exon	FALSE	canonical	3	57	junction_2	27.9928562315459	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATACTTTGCCTCAGAAG	NA	False	NA	NA	False	NA	NA	NA	10010811	10032021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516
ENSMUSG00000039200.17_18	chr16	+	2079	8	ISM	ENSMUSG00000039200.17	ENSMUST00000044005.14	2778	11	16534	-1	-3560	1	3prime_fragment	FALSE	canonical	3	59	junction_7	24.3360822228884	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTTTACTGTCTTTTAT	NA	False	NA	8	True	AATAAA	-16	NA	10027109	10060916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059409
ENSMUSG00000039200.17_2	chr16	+	2154	11	NIC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	1	950	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	41.4305442880009	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAAAATTGTCTTGAGT	NA	False	NA	-2	True	ATTAAA	-3	NA	10010811	10070292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10065308_10065462_10069241
ENSMUSG00000039200.17_26	chr16	+	2476	10	NIC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	1	1	combination_of_known_splicesites	FALSE	canonical	3	9	junction_8	38.5931612953051	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTTTACTGTCTTTTAT	NA	False	NA	8	True	AATAAA	-16	NA	10010811	10060916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10058424_10058511_10059409
ENSMUSG00000039200.17_3	chr16	+	3222	11	NNC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_10	36.5383360321731	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTTTACTGTCTTTTAT	NA	False	NA	8	True	AATAAA	-16	NA	10010811	10060916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10058730
ENSMUSG00000039200.17_7	chr16	+	2387	10	NIC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	33.4265363645911	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTTTACTGTCTTTTA	NA	False	NA	7	True	AATAAA	-15	NA	10010811	10060915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_10010890_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059409
ENSMUSG00000039200.17_8	chr16	+	3427	10	FSM	ENSMUSG00000039200.17	ENSMUST00000117220.8	1230	10	26	-2223	1	-14	multi-exon	FALSE	canonical	3	57	junction_2	25.7557377042739	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTACTTTTTGAGGT	NA	False	NA	-7	True	AATAAA	-1	NA	10010811	10060901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424
ENSMUSG00000039201.11_0	chrX	-	2372	6	FSM	ENSMUSG00000039201.11	ENSMUST00000239441.2	2648	6	262	14	-28	-3	multi-exon	FALSE	canonical	3	121	junction_4	11.0018180315801	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTCACTGTGGTATGTG	NA	False	NA	-21	True	NA	NA	NA	8042158	8020724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8038976_8039132_8040439_8040550_8041949
ENSMUSG00000039201.11_2	chrX	-	2216	5	FSM	ENSMUSG00000039201.11	ENSMUST00000143984.2	2184	5	-27	-5	-27	-3	multi-exon	FALSE	canonical	3	5	junction_3	59.3738157776641	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTCACTGTGGTATGTG	NA	False	NA	-21	True	NA	NA	NA	8042157	8020724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8040439_8040550_8041949
ENSMUSG00000039201.11_3	chrX	-	2269	4	NNC	ENSMUSG00000039201.11	novel	2184	5	NA	NA	8335	2	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	57.1858568373529	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGGTATGTGTATTT	5217	False	NA	-16	True	NA	NA	NA	8033795	8020719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_8022306_8022554_8022744_8022889_8023018_8033429
ENSMUSG00000039201.11_8	chrX	-	2517	5	FSM	ENSMUSG00000039201.11	ENSMUST00000133093.2	2560	5	40	3	-27	-3	multi-exon	FALSE	canonical	3	121	junction_3	12.051970793194	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTCACTGTGGTATGTG	NA	False	NA	-21	True	NA	NA	NA	8042157	8020724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8022306_8022554_8023018_8038976_8039132_8040439_8040550_8041949
ENSMUSG00000039202.13_0	chr7	+	4592	11	FSM	ENSMUSG00000039202.13	ENSMUST00000037315.13	6877	11	48	2237	-7	-2237	multi-exon	FALSE	canonical	3	33	junction_5	6.39140047250992	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCCAAAACCCCGTCTCT	2770	False	NA	NA	False	NA	NA	NA	78922994	79013019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_78923088_78944255_78944356_78946755_78946956_78973216_78973393_78975181_78975350_78998007_78998192_79000498_79000592_79003737_79003849_79005549_79005620_79007812_79007898_79009707
ENSMUSG00000039202.13_13	chr7	+	6357	8	ISM	ENSMUSG00000039202.13	ENSMUST00000037315.13	6877	11	50334	15	50279	-15	3prime_fragment	FALSE	canonical	3	33	junction_2	7.01892485516471	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAATGTAAAATGCT	NA	False	NA	7	True	ATTAAA	-2	NA	78973280	79015241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_78973393_78975181_78975350_78998007_78998192_79000498_79000592_79003737_79003849_79005549_79005620_79007812_79007898_79009707
ENSMUSG00000039202.13_5	chr7	+	2399	1	ISM	ENSMUSG00000039202.13	ENSMUST00000037315.13	6877	11	89884	27	89829	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATTAAAGACAAAAAA	NA	False	NA	-5	True	NA	NA	NA	79012830	79015229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79012800_79015200
ENSMUSG00000039205.17_10	chr2	+	2692	16	NIC	ENSMUSG00000039205.17	novel	2666	16	NA	NA	-10	0	intron_retention	FALSE	canonical	3	15	junction_4	21.1281802339908	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGTCCCCACCAGCACT	NA	False	NA	7	True	AATAAA	-18	NA	32253062	32268310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32253171_32253816_32253992_32254230_32254347_32257314_32257545_32260058_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ENSMUSG00000039205.17_11	chr2	+	2546	17	NIC	ENSMUSG00000039205.17	novel	2604	15	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_7	18.9868375460475	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	False	NA	6	True	AATAAA	-17	NA	32253075	32268309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32253171_32253816_32253992_32254230_32254347_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261114_32261260_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ENSMUSG00000039205.17_13	chr2	+	2624	18	NIC	ENSMUSG00000039205.17	novel	2666	16	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_8	21.2762355855551	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGTCCCCACCAGCACT	NA	False	NA	7	True	AATAAA	-18	NA	32253070	32268310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32253171_32253816_32253992_32254230_32254347_32255814_32255887_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261114_32261260_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ENSMUSG00000039205.17_22	chr2	+	2649	19	NIC	ENSMUSG00000039205.17	novel	2973	18	NA	NA	18	0	combination_of_known_junctions	TRUE	canonical	2	4	junction_1	29.8221580559005	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	False	NA	6	True	AATAAA	-17	NA	32253090	32268309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32253171_32253634_32253669_32253816_32253992_32254230_32254347_32255814_32255887_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261126_32261260_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ENSMUSG00000039205.17_25	chr2	+	3127	17	NIC	ENSMUSG00000039205.17	novel	2771	17	NA	NA	2	0	intron_retention	FALSE	canonical	2	8	junction_1	24.3977457975117	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	False	NA	6	True	AATAAA	-17	NA	32253211	32268309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32253669_32253816_32253992_32254230_32254347_32255814_32255887_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ENSMUSG00000039205.17_4	chr2	+	2700	16	NIC	ENSMUSG00000039205.17	novel	2604	15	NA	NA	-4	0	intron_retention	FALSE	canonical	3	47	junction_3	15.4050496771531	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	False	NA	6	True	AATAAA	-17	NA	32253068	32268309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32253171_32253816_32253992_32254230_32254347_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ENSMUSG00000039205.17_5	chr2	+	2771	17	NIC	ENSMUSG00000039205.17	novel	2666	16	NA	NA	-3	0	intron_retention	FALSE	canonical	3	33	junction_3	18.9699598049126	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	False	NA	6	True	AATAAA	-17	NA	32253069	32268309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32253171_32253816_32253992_32254230_32254347_32255814_32255887_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
ENSMUSG00000039206.14_0	chr5	+	2840	15	FSM	ENSMUSG00000039206.14	ENSMUST00000045593.12	4651	15	41	1770	12	-1770	multi-exon	FALSE	canonical	3	16	junction_4	5.5272977491866	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTAGTTGGTATACCAT	NA	False	NA	NA	False	AATAAA	-5	NA	143450379	143489927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143450532_143452707_143452860_143458701_143458874_143460367_143460627_143464168_143464292_143467384_143467513_143469980_143470108_143472902_143472987_143475681_143475760_143479912_143479994_143480296_143480425_143486724_143486794_143486879_143486953_143488616_143488865_143488961
ENSMUSG00000039206.14_1	chr5	+	2399	13	NIC	ENSMUSG00000039206.14	novel	4651	15	NA	NA	11	-1781	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	8.40138877408571	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	143450378	143489916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_143450532_143452707_143452860_143464168_143464292_143467384_143467513_143469980_143470108_143472902_143472987_143475681_143475760_143479912_143479994_143480296_143480425_143486724_143486794_143486879_143486953_143488616_143488865_143488961
ENSMUSG00000039206.14_4	chr5	+	2158	12	ISM	ENSMUSG00000039206.14	ENSMUST00000045593.12	4651	15	10055	1950	1722	-1950	3prime_fragment	FALSE	canonical	3	16	junction_1	4.91413881881439	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTGCCTGCGTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	143460393	143489747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_143460627_143464168_143464292_143467384_143467513_143469980_143470108_143472902_143472987_143475681_143475760_143479912_143479994_143480296_143480425_143486724_143486794_143486879_143486953_143488616_143488865_143488961
ENSMUSG00000039206.14_5	chr5	+	5512	7	NIC	ENSMUSG00000039206.14	novel	4651	15	NA	NA	-620	-1770	intron_retention	FALSE	canonical	3	22	junction_4	3.33749739908346	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTAGTTGGTATACCAT	561	False	NA	NA	False	AATAAA	-5	NA	143471812	143489927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_143475760_143479912_143479994_143480296_143480425_143486724_143486794_143486879_143486953_143488616_143488865_143488961
ENSMUSG00000039206.14_9	chr5	+	2615	14	NIC	ENSMUSG00000039206.14	novel	4651	15	NA	NA	50	-1785	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	7.7954621908666	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTAAATAAATAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	143450417	143489912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_143450532_143452707_143452860_143460367_143460627_143464168_143464292_143467384_143467513_143469980_143470108_143472902_143472987_143475681_143475760_143479912_143479994_143480296_143480425_143486724_143486794_143486879_143486953_143488616_143488865_143488961
ENSMUSG00000039209.13_0	chr16	+	504	3	FSM	ENSMUSG00000039209.13	ENSMUST00000044103.6	805	3	13	288	13	-7	multi-exon	FALSE	canonical	3	487	junction_1	5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAATTGCTTCTGTGTT	NA	False	NA	22	True	AATAAA	-22	NA	9988104	9992487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_9988189_9988278_9988356_9992144
ENSMUSG00000039209.13_1	chr16	+	415	2	ISM	ENSMUSG00000039209.13	ENSMUST00000044103.6	805	3	192	288	192	-7	3prime_fragment	FALSE	canonical	3	497	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAATTGCTTCTGTGTT	NA	False	NA	22	True	AATAAA	-22	NA	9988283	9992487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_9988356_9992144
ENSMUSG00000039210.17_10	chr1	+	4677	8	FSM	ENSMUSG00000039210.17	ENSMUST00000110943.9	4702	8	15	10	-1	-10	multi-exon	FALSE	canonical	3	14	junction_6	24.9038969166003	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTAAAGCCGTTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	186947733	187083891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_187036526_187036595_187073683_187073773_187080553
ENSMUSG00000039210.17_24	chr1	+	4224	9	FSM	ENSMUSG00000039210.17	ENSMUST00000160570.2	3704	9	-247	-273	-247	-4	multi-exon	FALSE	canonical	3	57	junction_7	10.974402033824	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCCGTTGTTGGTGTGT	NA	False	NA	NA	False	AATAAA	-22	NA	186958129	187083897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_186958417_186962980_186963043_186965327_186965511_186965943_186966024_187036526_187036595_187048720_187048761_187054480_187054552_187073683_187073773_187080553
ENSMUSG00000039210.17_25	chr1	+	2798	1	ISM	ENSMUSG00000039210.17	ENSMUST00000110943.9	4702	8	133375	10	122717	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTAAAGCCGTTGTTG	2528	False	NA	NA	False	AATAAA	-16	NA	187081093	187083891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_187081100_187083900
ENSMUSG00000039210.17_3	chr1	+	4798	10	FSM	ENSMUSG00000039210.17	ENSMUST00000065573.14	4547	10	12	-263	1	-14	multi-exon	FALSE	canonical	3	57	junction_8	10.9341463112378	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTATTTCTAAAGCCGTT	NA	False	NA	NA	False	AATAAA	-12	NA	186947719	187083887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_187036526_187036595_187048720_187048761_187054480_187054552_187073683_187073773_187080553
ENSMUSG00000039210.17_5	chr1	+	3050	6	FSM	ENSMUSG00000039210.17	ENSMUST00000044812.12	1639	6	-21	-1390	1	-24	multi-exon	FALSE	canonical	2	6	junction_5	31.740195336513	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGTAAGATTTTCAGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	186947719	186968004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_186966150
ENSMUSG00000039210.17_9	chr1	+	5283	6	FSM	ENSMUSG00000104394.3_ENSMUSG00000039210.17	ENSMUST00000097443.10	2411	6	15	-2887	1	-1639	multi-exon	FALSE	canonical	2	13	junction_5	28.9924128005932	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	186947719	186970915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_186966828
ENSMUSG00000039218.18_0	chr17	+	8832	15	FSM	ENSMUSG00000039218.18	ENSMUST00000190686.7	8864	15	32	0	-2	0	multi-exon	FALSE	canonical	3	160	junction_12	24.3951316655515	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATTGGTCTGTAGTCTT	NA	False	NA	11	True	AATAAA	-13	NA	24022192	24043710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24022373_24025905_24026177_24027039_24027148_24027327_24027493_24028942_24029021_24029386_24029450_24029712_24029746_24030004_24030056_24030612_24030706_24031401_24031595_24034095_24040665_24041386_24041675_24042764_24042879_24042989_24043095_24043189
ENSMUSG00000039218.18_21	chr17	+	3582	5	ISM	ENSMUSG00000039218.18	ENSMUST00000088621.11	8564	14	15914	7	-173	-2	3prime_fragment	FALSE	canonical	3	160	junction_2	14.3069039278245	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTAATTGGTCTGTAGTC	2779	False	NA	9	True	AATAAA	-11	NA	24038108	24043708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24040665_24041386_24041675_24042764_24042879_24042989_24043095_24043189
ENSMUSG00000039218.18_27	chr17	+	2682	3	FSM	ENSMUSG00000092981.3_ENSMUSG00000039218.18	ENSMUST00000190568.2	597	3	-1678	-407	460	-2	multi-exon	FALSE	canonical	3	162	junction_1	16	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTAATTGGTCTGTAGTC	2578	False	NA	9	True	AATAAA	-11	NA	24040820	24043708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24042879_24042989_24043095_24043189
ENSMUSG00000039218.18_36	chr17	+	266	1	ISM	ENSMUSG00000039218.18	ENSMUST00000190686.7	8864	15	21284	0	946	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATTGGTCTGTAGTCTT	5202	False	NA	11	True	AATAAA	-13	NA	24043444	24043710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24043400_24043700
ENSMUSG00000039219.19_23	chr13	+	3903	8	ISM	ENSMUSG00000039219.19	ENSMUST00000110534.8	5864	24	106216	2	5818	-2	3prime_fragment	FALSE	canonical	3	31	junction_1	17.6588995889857	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTTGATTTTGTTTGTA	NA	False	NA	2	True	AATAAA	-16	NA	14344592	14373945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_14344765_14355804_14355890_14358891_14359091_14361401_14362617_14365727_14365842_14367950_14368167_14369914_14370062_14372190
ENSMUSG00000039219.19_27	chr13	+	3043	5	ISM	ENSMUSG00000039219.19	ENSMUST00000110534.8	5864	24	123429	2	-3956	-2	3prime_fragment	FALSE	canonical	3	70	junction_2	7.90569415042095	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTTGATTTTGTTTGTA	NA	False	NA	2	True	AATAAA	-16	NA	14361805	14373945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_14362617_14365727_14365842_14367950_14368167_14369914_14370062_14372190
ENSMUSG00000039219.19_29	chr13	+	965	1	ISM	ENSMUSG00000039219.19	ENSMUST00000110536.8	5783	23	134611	7	7219	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTTGATTTTGTTTGTA	NA	False	NA	2	True	AATAAA	-16	NA	14372980	14373945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_14373000_14373900
ENSMUSG00000039219.19_3	chr13	+	5742	24	NIC	ENSMUSG00000039219.19	novel	5864	24	NA	NA	5	-2	combination_of_known_junctions	FALSE	canonical	3	26	junction_17	13.4276750581372	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTTGATTTTGTTTGTA	1448	False	NA	2	True	AATAAA	-16	NA	14238388	14373945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565_14329721_14332358_14332432_14334762_14334858_14335882_14335981_14338693_14338935_14339351_14339528_14344503_14344657_14355804_14355890_14358891_14359091_14361401_14362617_14365727_14365842_14367950_14368167_14369914_14370062_14372190
ENSMUSG00000039219.19_4	chr13	+	5852	24	FSM	ENSMUSG00000039219.19	ENSMUST00000110534.8	5864	24	10	2	3	-2	multi-exon	FALSE	canonical	3	31	junction_17	12.735494361632	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTTGATTTTGTTTGTA	1446	False	NA	2	True	AATAAA	-16	NA	14238386	14373945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565_14329721_14332358_14332432_14334762_14334858_14335882_14335981_14338693_14338935_14339351_14339528_14344503_14344765_14355804_14355890_14358891_14359091_14361401_14362617_14365727_14365842_14367950_14368167_14369914_14370062_14372190
ENSMUSG00000039219.19_5	chr13	+	5589	23	FSM	ENSMUSG00000039219.19	ENSMUST00000039538.15	5844	23	12	243	5	-2	multi-exon	FALSE	canonical	3	6	junction_16	16.774390161471	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTTGATTTTGTTTGTA	1448	False	NA	2	True	AATAAA	-16	NA	14238388	14373945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565_14329721_14332358_14332432_14334762_14334858_14335882_14335981_14338693_14338935_14339351_14339528_14355804_14355890_14358891_14359091_14361401_14362617_14365727_14365842_14367950_14368167_14369914_14370062_14372190
ENSMUSG00000039220.17_0	chr17	+	4342	20	FSM	ENSMUSG00000039220.17	ENSMUST00000087211.9	4255	20	-89	2	43	0	multi-exon	FALSE	canonical	3	16	junction_1	32.7700795901305	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCTGGTATGTTTCACT	NA	False	NA	26	True	AATAAA	-26	NA	36227368	36243173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36227491_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
ENSMUSG00000039220.17_1	chr17	+	4236	20	NIC	ENSMUSG00000039220.17	novel	4222	19	NA	NA	-12	-4	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	16.24875874228	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAACCCCTGGTATGTTT	NA	False	NA	22	True	AATAAA	-22	NA	36227877	36243169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_36227898_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
ENSMUSG00000039220.17_13	chr17	+	4216	19	FSM	ENSMUSG00000039220.17	ENSMUST00000087210.7	4222	19	0	6	0	-6	multi-exon	FALSE	canonical	3	118	junction_1	14.6080478411181	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTAACCCCTGGTATGT	NA	False	NA	20	True	AATAAA	-20	NA	36228087	36243167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
ENSMUSG00000039220.17_32	chr17	+	1558	2	ISM	ENSMUSG00000039220.17	ENSMUST00000087210.7	4222	19	13270	1	3972	-1	3prime_fragment	FALSE	canonical	3	165	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCCTGGTATGTTTCAC	NA	False	NA	25	True	AATAAA	-25	NA	36241357	36243172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_36241784_36242040
ENSMUSG00000039221.11_0	chr3	+	477	4	FSM	ENSMUSG00000039221.11	ENSMUST00000043867.11	552	4	75	0	1	0	multi-exon	FALSE	canonical	3	2038	junction_1	2670.46824857864	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28859659	28861564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_28859693_28860648_28860742_28860885_28861008_28861335
ENSMUSG00000039221.11_2	chr3	+	474	4	FSM	ENSMUSG00000039221.11	ENSMUST00000194649.2	525	4	42	9	1	0	multi-exon	FALSE	canonical	3	3779	junction_1	1855.270390596	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28859659	28861564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_28859693_28860651_28860742_28860885_28861008_28861335
ENSMUSG00000039221.11_26	chr3	+	442	3	ISM	ENSMUSG00000039221.11	ENSMUST00000195827.6	473	4	839	0	3	0	3prime_fragment	FALSE	canonical	3	7361	junction_1	315.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28860650	28861564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_28860742_28860885_28861008_28861335
ENSMUSG00000039221.11_4	chr3	+	541	4	NIC	ENSMUSG00000039221.11	novel	552	4	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	450	junction_2	3086.0505864652	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28859659	28861564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_28859693_28860651_28860742_28860818_28861008_28861335
ENSMUSG00000039224.2_0	chr1	+	3220	1	FSM	ENSMUSG00000039224.2	ENSMUST00000045108.2	3212	1	259	-267	259	267	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGGGATTATGGTTTTTT	NA	False	NA	1	True	NA	NA	NA	186699871	186703091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_186699900_186703100
ENSMUSG00000039230.15_0	chr11	+	3863	39	FSM	ENSMUSG00000039230.15	ENSMUST00000103013.10	3906	39	38	5	38	-4	multi-exon	TRUE	canonical	0	0	junction_21	67.5521189983218	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGCCCAGCCTCTGCCT	NA	False	NA	28	True	ATTAAA	-10	NA	121342812	121507985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_121343055_121344456_121344508_121350226_121350325_121351234_121351337_121352079_121352227_121352577_121352634_121366364_121366498_121383383_121383430_121384584_121384718_121387820_121387964_121389861_121389923_121390861_121390937_121394518_121394614_121431677_121431835_121441049_121441108_121447781_121447812_121451500_121451587_121464621_121464703_121466111_121466186_121466951_121467070_121469540_121469602_121470973_121470997_121473578_121473611_121481169_121481233_121482004_121482082_121483456_121483539_121485085_121485205_121487274_121487367_121488077_121488219_121492782_121492867_121493813_121493973_121494059_121494199_121494440_121494563_121496088_121496167_121499397_121499488_121500165_121500254_121500806_121500917_121502489_121502575_121507753
ENSMUSG00000039230.15_7	chr11	+	3833	38	NIC	ENSMUSG00000039230.15	novel	3906	39	NA	NA	38	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_20	78.8302537837747	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGCCCAGCCTCTGCCT	NA	False	NA	28	True	ATTAAA	-10	NA	121342812	121507985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_121343055_121344456_121344508_121350226_121350325_121351234_121351337_121352079_121352227_121352577_121352634_121366364_121366498_121383383_121383430_121384584_121384718_121387820_121387964_121389861_121389923_121390861_121390937_121394518_121394614_121431677_121431835_121441049_121441108_121451500_121451587_121464621_121464703_121466111_121466186_121466951_121467070_121469540_121469602_121470973_121470997_121473578_121473611_121481169_121481233_121482004_121482082_121483456_121483539_121485085_121485205_121487274_121487367_121488077_121488219_121492782_121492867_121493813_121493973_121494059_121494199_121494440_121494563_121496088_121496167_121499397_121499488_121500165_121500254_121500806_121500917_121502489_121502575_121507753
ENSMUSG00000039231.19_0	chrX	-	2807	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115637.8	2778	6	-30	1	25	-1	multi-exon	TRUE	canonical	3	73	junction_5	15.551205741035	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCTTGAGATTTGGGA	7325	False	NA	NA	False	NA	NA	NA	7940527	7927674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940354
ENSMUSG00000039231.19_1	chrX	-	2691	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115638.10	3116	6	159	266	20	-2	multi-exon	FALSE	canonical	3	87	junction_5	11.3947356265953	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAGCTTGAGATTTGGG	7012	False	NA	NA	False	NA	NA	NA	7940840	7927675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940782
ENSMUSG00000039231.19_12	chrX	-	3540	3	ISM	ENSMUSG00000039231.19	ENSMUST00000150095.8	2807	5	20	6489	20	-506	5prime_fragment	FALSE	canonical	3	87	junction_2	13	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTGGATTGTTTTGTT	7012	False	NA	NA	False	NA	NA	NA	7940840	7934153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7937490_7938561_7938708_7940782
ENSMUSG00000039231.19_14	chrX	-	3654	3	FSM	ENSMUSG00000039231.19	ENSMUST00000127617.2	1166	3	24	-2512	24	-508	multi-exon	FALSE	canonical	3	73	junction_2	20	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATTGCTGGATTGTTTTG	7324	False	NA	NA	False	NA	NA	NA	7940528	7934155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7937490_7938561_7938708_7940354
ENSMUSG00000039231.19_2	chrX	-	2892	5	NIC	ENSMUSG00000039231.19	novel	2778	6	NA	NA	25	-1	intron_retention	FALSE	canonical	3	73	junction_4	16.9908063375462	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCTTGAGATTTGGGA	7325	False	NA	NA	False	NA	NA	NA	7940527	7927674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7929223_7929934_7930297_7936826_7937490_7938561_7938708_7940354
ENSMUSG00000039231.19_3	chrX	-	2761	5	FSM	ENSMUSG00000039231.19	ENSMUST00000150095.8	2807	5	36	10	36	-1	multi-exon	FALSE	canonical	3	87	junction_4	11.6054943884352	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCTTGAGATTTGGGA	7028	False	NA	NA	False	NA	NA	NA	7940824	7927674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7929223_7929934_7930297_7936826_7937490_7938561_7938708_7940782
ENSMUSG00000039231.19_4	chrX	-	917	1	ISM	ENSMUSG00000039231.19	ENSMUST00000115638.10	3116	6	12408	265	11906	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCTTGAGATTTGGGA	NA	False	NA	NA	False	NA	NA	NA	7928591	7927674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7927700_7928600
ENSMUSG00000039233.13_1	chr13	-	1821	17	FSM	ENSMUSG00000039233.13	ENSMUST00000039894.13	1844	17	23	0	2	0	multi-exon	FALSE	canonical	3	97	junction_4	17.0705109399221	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTTCTCTGCCCTTTC	NA	False	NA	-5	True	AATAAA	-14	NA	14214200	14172536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUSG00000039233.13_18	chr13	-	1817	17	FSM	ENSMUSG00000039233.13	ENSMUST00000162326.2	1853	17	37	-1	-5	0	multi-exon	FALSE	canonical	2	7	junction_4	33.754571449657	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTTCTCTGCCCTTTC	NA	False	NA	-5	True	AATAAA	-14	NA	14214186	14172536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178117_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUSG00000039233.13_27	chr13	-	1943	4	FSM	ENSMUSG00000039233.13	ENSMUST00000160776.2	909	4	2	-1036	2	1036	multi-exon	FALSE	canonical	3	140	junction_1	12.4988888395018	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCCTTTGGTCATGG	NA	False	NA	-1	True	NA	NA	NA	14214200	14192823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUSG00000039234.12_2	chr3	+	3918	23	NNC	ENSMUSG00000039234.12	novel	3649	20	NA	NA	-2656	-5	at_least_one_novel_splicesite	TRUE	canonical	3	15	junction_1	16.1403964230813	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTACTCTGGCTTACTGTG	NA	False	NA	8	True	AATAAA	-8	NA	123058447	123159280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_123058555_123063242_123063403_123072793_123072918_123084064_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
ENSMUSG00000039234.12_21	chr3	+	1698	8	ISM	ENSMUSG00000039234.12	ENSMUST00000197291.5	3649	20	63072	1	-1355	-1	3prime_fragment	FALSE	canonical	3	61	junction_3	11.5687827663016	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGGCTTACTGTGTTTT	NA	False	NA	12	True	AATAAA	-12	NA	123147118	123159284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
ENSMUSG00000039234.12_3	chr3	+	5866	24	NNC	ENSMUSG00000039234.12	novel	3903	23	NA	NA	-2656	-1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	15.8213084042354	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGGCTTACTGTGTTTT	NA	False	NA	12	True	AATAAA	-12	NA	123058447	123159284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_123058555_123059241_123061186_123063242_123063403_123072793_123072918_123084064_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
ENSMUSG00000039234.12_9	chr3	+	3866	23	FSM	ENSMUSG00000039234.12	ENSMUST00000047923.12	3903	23	31	6	-4	-1	multi-exon	FALSE	canonical	3	54	junction_9	11.2449253935915	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGGCTTACTGTGTTTT	NA	False	NA	12	True	AATAAA	-12	NA	123061134	123159284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_123061186_123063242_123063403_123072793_123072918_123084064_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
ENSMUSG00000039238.7_0	chr11	-	3207	3	FSM	ENSMUSG00000039238.7	ENSMUST00000092298.6	3232	3	2	23	2	-23	multi-exon	FALSE	canonical	2	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAGATCAATATCAG	NA	False	NA	NA	False	AATAAA	-27	NA	121410157	121401826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_121403326_121403452_121405059_121410055
ENSMUSG00000039239.15_0	chr1	-	4389	7	FSM	ENSMUSG00000039239.15	ENSMUST00000045288.14	5116	7	728	-1	439	1	multi-exon	FALSE	canonical	0	0	junction_2	1.06718737290547	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGTTGCTGTGTTCTTC	NA	False	NA	NA	False	AATAAA	-11	NA	186437458	186354987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_186357804_186361079_186361234_186362806_186362985_186364654_186364766_186364874_186365008_186381931_186382096_186436625
ENSMUSG00000039242.11_1	chr13	+	3718	12	FSM	ENSMUSG00000039242.11	ENSMUST00000099747.5	3892	12	166	8	10	-8	multi-exon	FALSE	canonical	3	178	junction_5	19.409889274617	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAAACTAGCCTTTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	14129219	14173651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
ENSMUSG00000039242.11_2	chr13	+	3679	12	NIC	ENSMUSG00000039242.11	novel	3892	12	NA	NA	10	-6	intron_retention	FALSE	canonical	3	22	junction_7	55.6602741252905	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAACTAGCCTTTTCCTA	NA	False	NA	NA	False	AATAAA	-16	NA	14129219	14173653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165994_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
ENSMUSG00000039242.11_40	chr13	+	1647	1	ISM	ENSMUSG00000039242.11	ENSMUST00000099747.5	3892	12	42953	6	2268	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAACTAGCCTTTTCCTA	1975	False	NA	NA	False	AATAAA	-16	NA	14172006	14173653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_14172000_14173700
ENSMUSG00000039242.11_8	chr13	+	2367	13	NIC	ENSMUSG00000039242.11	novel	2439	13	NA	NA	9	-6	combination_of_known_junctions	TRUE	canonical	3	13	junction_12	55.6334107249312	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAACTAGCCTTTTCCTA	NA	False	NA	NA	False	AATAAA	-16	NA	14129218	14173653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171610_14172963
ENSMUSG00000039244.11_1	chr5	-	2221	6	NNC	ENSMUSG00000039244.11	novel	2208	6	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	52.428999608995	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATAGGCATTGTGGGGTT	NA	False	NA	-9	True	AATAAA	-15	NA	143301083	143286965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_143287759_143292520_143292561_143293370_143293896_143297465_143297632_143299932_143300155_143300608
ENSMUSG00000039244.11_2	chr5	-	2168	6	FSM	ENSMUSG00000039244.11	ENSMUST00000046418.3	2208	6	37	3	17	-1	multi-exon	FALSE	canonical	3	130	junction_3	6.98569967862919	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATAGGCATTGTGGGGTTT	NA	False	NA	-8	True	AATAAA	-16	NA	143301078	143286964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143287759_143292520_143292561_143293370_143293896_143297465_143297632_143299932_143300155_143300657
ENSMUSG00000039246.9_1	chr1	-	1396	5	FSM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	24	158	2	-158	multi-exon	FALSE	canonical	3	108	junction_3	16.3477827242718	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATAATTTACTGACTT	NA	False	NA	-20	True	AATAAA	-6	NA	185849483	185820085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_185820966_185821640_185821757_185832389_185832560_185846460_185846561_185849353
ENSMUSG00000039246.9_3	chr1	-	2454	6	NNC	ENSMUSG00000039246.9	novel	1578	5	NA	NA	10	-136	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	61.9593415071529	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTTACTTACTAAAATGT	NA	False	NA	2	True	AATAAA	-28	NA	185849497	185820063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_185820966_185821640_185821757_185832389_185832560_185833859_185834882_185846460_185846561_185849353
ENSMUSG00000039246.9_4	chr1	-	3592	3	ISM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	14522	158	14500	-158	3prime_fragment	FALSE	canonical	3	113	junction_2	3	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATAATTTACTGACTT	NA	False	NA	-20	True	AATAAA	-6	NA	185834985	185820085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_185820966_185821640_185821757_185832389
ENSMUSG00000039246.9_7	chr1	-	1233	4	FSM	ENSMUSG00000039246.9	ENSMUST00000195481.2	584	4	2	-651	2	-151	multi-exon	FALSE	canonical	3	17	junction_2	56.8174464598878	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTACTGACTTTCAGATT	NA	False	NA	-13	True	AATAAA	-13	NA	185849483	185820078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_185820966_185821640_185821757_185846460_185846561_185849353
ENSMUSG00000039252.12_1	chr5	-	1962	8	FSM	ENSMUSG00000039252.12	ENSMUST00000199942.5	6273	8	-55	4366	-55	-4366	multi-exon	FALSE	canonical	3	32	junction_6	6.36636570147348	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAATCATAAAATA	NA	False	NA	NA	False	NA	NA	NA	52723700	52695224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_52696123_52703794_52703960_52711744_52711915_52713003_52713076_52717504_52717577_52719467_52719540_52721307_52721380_52723259
ENSMUSG00000039252.12_2	chr5	-	728	1	ISM	ENSMUSG00000039252.12	ENSMUST00000199942.5	6273	8	27674	4385	27674	-4385	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAGAAATAATAATAATA	NA	False	NA	NA	False	NA	NA	NA	52695971	52695243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_52695200_52696000
ENSMUSG00000039252.12_4	chr5	-	4002	7	NIC	ENSMUSG00000039252.12	novel	6273	8	NA	NA	-76	-4115	intron_retention	FALSE	canonical	3	38	junction_2	4.6785562825394	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAGGATAAAACAG	NA	False	NA	NA	False	NA	NA	NA	52723721	52694973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_52696123_52703794_52703960_52711744_52711915_52713003_52713076_52717504_52717577_52719467_52721380_52723259
ENSMUSG00000039252.12_7	chr5	-	3518	8	NNC	ENSMUSG00000039252.12	novel	6273	8	NA	NA	-64	-4372	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_6	14.7634407803015	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAATAATAAAAAAATCAT	NA	False	NA	NA	False	NA	NA	NA	52723709	52695230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_52696123_52703794_52703960_52711744_52711915_52713003_52713076_52717504_52717577_52719467_52719540_52719754_52721380_52723259
ENSMUSG00000039253.8_0	chr11	+	2486	6	FSM	ENSMUSG00000039253.8	ENSMUST00000038096.8	2520	6	29	5	29	-5	multi-exon	TRUE	canonical	3	26	junction_4	7.30479294709987	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGATGCCTAAGACTGGTA	3886	False	NA	NA	False	AATAAA	-15	NA	121312255	121322109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_121312430_121315751_121315904_121316380_121316473_121317446_121317530_121319870_121319994_121320247
ENSMUSG00000039253.8_1	chr11	+	1800	1	ISM	ENSMUSG00000039253.8	ENSMUST00000038096.8	2520	6	8077	11	8077	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTCAGTGATGCCTAAGA	NA	False	NA	NA	False	AATAAA	-9	NA	121320303	121322103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_121320300_121322100
ENSMUSG00000039254.17_0	chr2	+	2833	20	FSM	ENSMUSG00000039254.17	ENSMUST00000036473.16	2918	20	83	2	1	2	multi-exon	FALSE	canonical	3	126	junction_15	17.3977423950124	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTATGTTATTTATT	NA	False	NA	15	True	AATAAA	-16	NA	32126684	32145015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
ENSMUSG00000039254.17_2	chr2	+	2739	19	NIC	ENSMUSG00000039254.17	novel	2918	20	NA	NA	1	1	combination_of_known_splicesites	FALSE	canonical	3	7	junction_11	38.3467367871403	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTTTTATGTTATTTAT	NA	False	NA	14	True	AATAAA	-15	NA	32126684	32145014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
ENSMUSG00000039254.17_7	chr2	+	2908	20	NNC	ENSMUSG00000039254.17	novel	2918	20	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	34.216031945643	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTATGTTATTTATT	NA	False	NA	15	True	AATAAA	-16	NA	32126684	32145015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_32126829_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
ENSMUSG00000039262.17_1	chr2	+	8535	30	FSM	ENSMUSG00000039262.17	ENSMUST00000036691.14	8612	30	31	46	31	-31	multi-exon	FALSE	canonical	3	120	junction_19	84.1956133534682	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAAAAGTATAAA	6681	False	NA	-22	True	NA	NA	NA	32041124	32124503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32041304_32072469_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109225_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32120622
ENSMUSG00000039262.17_158	chr2	+	2848	1	ISM	ENSMUSG00000039262.17	ENSMUST00000036691.14	8612	30	80601	7	11915	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	342	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCAGGCTGTGTCGGTT	NA	False	NA	17	True	AATAAA	-33	NA	32121694	32124542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32121700_32124500
ENSMUSG00000039262.17_2	chr2	+	8548	30	NIC	ENSMUSG00000039262.17	novel	10671	32	NA	NA	15	-31	combination_of_known_junctions	TRUE	canonical	3	283	junction_29	60.7166476024171	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAAAAGTATAAA	6665	False	NA	-22	True	NA	NA	NA	32041108	32124503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32041304_32072469_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109228_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32120622
ENSMUSG00000039262.17_4	chr2	+	6916	31	NIC	ENSMUSG00000039262.17	novel	10671	32	NA	NA	27	1624	combination_of_known_junctions	FALSE	canonical	3	120	junction_19	92.1634357480714	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATATGTATTGATGTT	6677	False	NA	18	True	AATAAA	-20	NA	32041120	32122798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32041304_32072469_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109225_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32119274_32119357_32120622
ENSMUSG00000039262.17_5	chr2	+	6920	31	NIC	ENSMUSG00000039262.17	novel	10671	32	NA	NA	21	1625	combination_of_known_junctions	FALSE	canonical	3	239	junction_29	73.1573342567617	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATATGTATTGATGTTG	6671	False	NA	19	True	AATAAA	-21	NA	32041114	32122799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32041304_32072469_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109228_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32119274_32119357_32120622
ENSMUSG00000039263.17_1	chr2	+	2085	12	FSM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	7	375	7	-7	multi-exon	FALSE	canonical	3	214	junction_9	24.2330284822489	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATAACCTTGTCTCCGCT	NA	False	NA	1	True	ATTAAA	-10	NA	173952148	173964488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_173952366_173952869_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843_173957987_173961185_173961264_173962019_173962121_173962336_173962461_173962740_173962918_173963271_173963383_173963883
ENSMUSG00000039263.17_3	chr2	+	2362	11	NIC	ENSMUSG00000039263.17	novel	2467	12	NA	NA	14	-3	intron_retention	FALSE	canonical	3	237	junction_8	19.4907670449369	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCTTGTCTCCGCTCACT	NA	False	NA	5	True	ATTAAA	-14	NA	173952155	173964492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_173952366_173952869_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843_173957987_173961185_173961264_173962019_173962121_173962336_173962918_173963271_173963383_173963883
ENSMUSG00000039269.6_1	chr17	+	1489	3	NNC	ENSMUSG00000039269.6	novel	1290	2	NA	NA	-3382	-7	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	2	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCGATTTCTCTCCGCGT	27	False	NA	NA	False	AATAAA	-16	NA	35874964	35879842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_35875226_35878401_35878518_35878730
ENSMUSG00000039270.10_0	chr4	-	6175	6	FSM	ENSMUSG00000039270.10	ENSMUST00000107359.9	7924	6	-39	1788	28	-1788	multi-exon	FALSE	canonical	1	2	junction_2	4.93963561409139	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATTGTAGATTCGTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	70453204	70347089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_70351769_70353453_70353724_70366899_70367044_70374097_70374238_70406367_70406570_70452464
ENSMUSG00000039270.10_1	chr4	-	2644	1	ISM	ENSMUSG00000039270.10	ENSMUST00000107359.9	7924	6	103435	1785	103435	-1785	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTAGATTCGTTTCACT	NA	False	NA	NA	False	AATAAA	-18	NA	70349730	70347086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_70347100_70349700
ENSMUSG00000039275.10_1	chr11	+	3789	9	FSM	ENSMUSG00000039275.10	ENSMUST00000106113.2	5029	9	30	1210	30	-1210	multi-exon	FALSE	canonical	3	175	junction_8	36.2594815186318	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGTGTGCCCACCGCA	4692	False	NA	18	True	AATAAA	-24	NA	121150845	121199512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_121151349_121176247_121176443_121178756_121178905_121181569_121181717_121186854_121187049_121187739_121187916_121189384_121189682_121190409_121190620_121197593
ENSMUSG00000039275.10_2	chr11	+	4978	9	NNC	ENSMUSG00000039275.10	novel	5029	9	NA	NA	29	-19	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_8	71.1634342552409	119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTTATTAATTTTAAT	4691	False	NA	NA	False	AATAAA	-1	NA	121150844	121200703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_121151349_121176247_121176443_121178756_121178905_121181569_121181717_121186854_121187049_121187739_121187916_121189384_121189682_121190409_121190620_121197596
ENSMUSG00000039275.10_32	chr11	+	2424	1	ISM	ENSMUSG00000039275.10	ENSMUST00000106113.2	5029	9	47481	2	8955	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAATACAGAGTATCATT	NA	False	NA	NA	False	AATAAA	-18	NA	121198296	121200720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_121198300_121200700
ENSMUSG00000039275.10_6	chr11	+	4776	8	NIC	ENSMUSG00000039275.10	novel	5029	9	NA	NA	32	-11	combination_of_known_splicesites	FALSE	canonical	3	20	junction_7	88.9058203829152	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATTTTAATGAATACAG	4694	False	NA	NA	False	AATAAA	-9	NA	121150847	121200711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_121151349_121176247_121176443_121178756_121178905_121181569_121181717_121186854_121187049_121187739_121187916_121189384_121189682_121197593
ENSMUSG00000039278.11_0	chrX	+	945	3	FSM	ENSMUSG00000039278.11	ENSMUST00000041096.4	2193	3	72	1176	72	-1176	multi-exon	FALSE	canonical	3	43	junction_1	26.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTTTGTCTGAGCGCCC	NA	False	NA	4	True	AATAAA	-14	NA	7786132	7789473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7786284_7788286_7788754_7789146
ENSMUSG00000039278.11_2	chrX	+	667	2	ISM	ENSMUSG00000039278.11	ENSMUST00000041096.4	2193	3	2353	1176	2353	-1176	3prime_fragment	FALSE	canonical	3	96	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTTTGTCTGAGCGCCC	NA	False	NA	4	True	AATAAA	-14	NA	7788413	7789473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_7788754_7789146
ENSMUSG00000039285.13_0	chr9	+	3089	8	FSM	ENSMUSG00000039285.13	ENSMUST00000044454.12	3396	8	39	268	-19	-268	multi-exon	FALSE	canonical	0	0	junction_7	57.0105611411838	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGAATTGGATGTGAA	9624	False	NA	NA	False	ATTAAA	-16	NA	117869605	117892639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117890781
ENSMUSG00000039285.13_1	chr9	+	3136	9	NIC	ENSMUSG00000039285.13	novel	3396	8	NA	NA	-19	-268	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	60.328139164075	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGAATTGGATGTGAA	9624	False	NA	NA	False	ATTAAA	-16	NA	117869605	117892639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117888687_117888735_117890781
ENSMUSG00000039285.13_23	chr9	+	1236	1	ISM	ENSMUSG00000039285.13	ENSMUST00000044454.12	3396	8	21837	268	3280	-268	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGAATTGGATGTGAA	NA	False	NA	NA	False	ATTAAA	-16	NA	117891403	117892639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_117891400_117892600
ENSMUSG00000039286.13_0	chr3	-	4439	7	NNC	ENSMUSG00000039286.13	novel	6875	26	NA	NA	253666	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_6	34.8456915876586	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGTAGGGTTCTTCAG	NA	False	NA	-25	True	AATAAA	-18	NA	27510881	27470310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_27473752_27480182_27480311_27483012_27483180_27494106_27494320_27505462_27505744_27510597_27510748_27510822
ENSMUSG00000039286.13_1	chr3	-	2249	1	ISM	ENSMUSG00000039286.13	ENSMUST00000195008.6	6886	27	291988	0	291988	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGTAGGGTTCTTCAG	NA	False	NA	-25	True	AATAAA	-18	NA	27472559	27470310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_27470300_27472600
ENSMUSG00000039286.13_12	chr3	-	4455	6	ISM	ENSMUSG00000039286.13	ENSMUST00000195008.6	6886	27	253725	0	253725	0	3prime_fragment	FALSE	canonical	3	78	junction_4	12.8996123972777	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGTAGGGTTCTTCAG	NA	False	NA	-25	True	AATAAA	-18	NA	27510822	27470310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_27473752_27480182_27480311_27483012_27483180_27494106_27494320_27505462_27505744_27510597
ENSMUSG00000039286.13_13	chr3	-	6969	26	NIC	ENSMUSG00000039286.13	novel	6875	26	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_25	12.8644626782466	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGTAGGGTTCTTCAG	NA	False	NA	-25	True	AATAAA	-18	NA	27765456	27470310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_27473752_27480182_27480311_27483012_27483180_27494106_27494320_27505462_27505744_27510597_27510748_27511135_27511250_27512865_27513039_27514093_27514200_27515824_27515944_27517923_27517996_27519850_27519990_27521523_27521611_27523014_27523190_27524370_27524496_27542385_27542440_27545173_27545313_27552925_27552986_27555542_27555695_27562629_27562689_27592097_27592389_27596079_27596324_27610268_27610346_27674753_27674830_27697099_27697239_27765268
ENSMUSG00000039286.13_2	chr3	-	7214	26	NNC	ENSMUSG00000039286.13	novel	6875	26	NA	NA	53522	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_25	16.7382675328123	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGTAGGGTTCTTCAG	271	False	NA	-25	True	AATAAA	-18	NA	27711025	27470310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_27473752_27480182_27480311_27483012_27483180_27494106_27494320_27505462_27505744_27510597_27510748_27511135_27511250_27512865_27513039_27514093_27514200_27515824_27515944_27517923_27517996_27519850_27519990_27521523_27521611_27523014_27523190_27524370_27524496_27542385_27542440_27545173_27545313_27552925_27552986_27555542_27555695_27562629_27562689_27592097_27592389_27596079_27596324_27610268_27610346_27674753_27674830_27697099_27697239_27710592
ENSMUSG00000039286.13_20	chr3	-	3657	3	ISM	ENSMUSG00000039286.13	ENSMUST00000195008.6	6886	27	281447	0	281447	0	3prime_fragment	FALSE	canonical	3	85	junction_2	14.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGTAGGGTTCTTCAG	NA	False	NA	-25	True	AATAAA	-18	NA	27483100	27470310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_27473752_27480182_27480311_27483012
ENSMUSG00000039286.13_4	chr3	-	6760	24	NIC	ENSMUSG00000039286.13	novel	6875	26	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	2	13	junction_8	20.3423441147567	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGTAGGGTTCTTCAG	NA	False	NA	-25	True	AATAAA	-18	NA	27765472	27470310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_27473752_27480182_27480311_27483012_27483180_27494106_27494320_27505462_27505744_27510597_27510748_27511135_27511250_27512865_27513039_27517923_27517996_27519850_27519990_27521523_27521611_27523014_27523190_27524370_27524496_27542385_27542440_27545173_27545313_27552925_27552986_27555542_27555695_27562629_27562689_27592097_27592389_27596079_27596324_27610268_27610346_27674753_27674830_27697099_27697239_27765268
ENSMUSG00000039286.13_9	chr3	-	6643	24	NIC	ENSMUSG00000039286.13	novel	6875	26	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	1	7	junction_23	25.6582896173334	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGTAGGGTTCTTCAG	NA	False	NA	-25	True	AATAAA	-18	NA	27764581	27470310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_27473752_27480182_27480311_27483012_27483180_27494106_27494320_27505462_27505744_27510597_27510748_27511135_27511250_27512865_27513039_27517923_27517996_27519850_27519990_27521523_27521611_27523014_27523190_27524370_27524496_27542385_27542440_27545173_27545313_27552925_27552986_27555542_27555695_27562629_27562689_27592097_27592389_27596079_27596324_27610268_27610346_27674753_27674830_27697099_27697239_27764494
ENSMUSG00000039294.15_0	chr11	-	2378	7	FSM	ENSMUSG00000039294.15	ENSMUST00000038709.14	2417	7	36	3	32	-3	multi-exon	FALSE	canonical	0	0	junction_6	26.4790273403101	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTGCCTTTCTGTTTTC	NA	False	NA	-3	True	AATAAA	-19	NA	121120099	121113416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119864
ENSMUSG00000039294.15_1	chr11	-	2232	7	FSM	ENSMUSG00000039294.15	ENSMUST00000106115.8	2239	7	4	3	4	-3	multi-exon	FALSE	canonical	2	10	junction_6	22.8284666346404	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTGCCTTTCTGTTTTC	NA	False	NA	-3	True	AATAAA	-19	NA	121120127	121113416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121120038
ENSMUSG00000039294.15_13	chr11	-	2640	7	FSM	ENSMUSG00000039294.15	ENSMUST00000137299.8	837	7	-168	-1635	-28	-3	multi-exon	FALSE	canonical	1	1	junction_6	26.1130022955785	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTGCCTTTCTGTTTTC	NA	False	NA	-3	True	AATAAA	-19	NA	121120089	121113416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119592
ENSMUSG00000039294.15_15	chr11	-	2935	6	ISM	ENSMUSG00000039294.15	ENSMUST00000106115.8	2239	7	41	5	-29	-5	intron_retention	FALSE	canonical	3	63	junction_1	5.41848687365763	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAATGTGCCTTTCTGTTT	NA	False	NA	-5	True	AATAAA	-17	NA	121120090	121113418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153
ENSMUSG00000039294.15_2	chr11	-	1192	1	ISM	ENSMUSG00000039294.15	ENSMUST00000106115.8	2239	7	5523	3	3600	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTGCCTTTCTGTTTTC	3649	False	NA	-3	True	AATAAA	-19	NA	121114608	121113416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_121113400_121114600
ENSMUSG00000039294.15_3	chr11	-	2358	7	NIC	ENSMUSG00000039294.15	novel	2417	7	NA	NA	32	-3	combination_of_known_junctions	FALSE	canonical	3	24	junction_6	17.7709188157381	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTGCCTTTCTGTTTTC	NA	False	NA	-3	True	AATAAA	-19	NA	121120099	121113416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119884
ENSMUSG00000039296.16_0	chr5	-	1281	3	ISM	ENSMUSG00000039296.16	ENSMUST00000085733.9	1819	7	6636	0	6636	0	3prime_fragment	FALSE	canonical	2	3	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGATGGCTTTGTTTTCT	NA	False	NA	NA	False	AATAAA	-34	NA	143205001	143202070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_143202965_143204425_143204529_143204717
ENSMUSG00000039298.17_1	chr4	-	5678	37	FSM	ENSMUSG00000039298.17	ENSMUST00000144099.8	11847	37	1	6168	1	-1	multi-exon	FALSE	canonical	3	146	junction_29	30.4796025702355	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCAGCTGCCTCTGTCCT	NA	False	NA	-5	True	AATAAA	-14	NA	70328679	70141260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_70141352_70141766_70141814_70146834_70146962_70153583_70153728_70156416_70156683_70157521_70157600_70160707_70160833_70161632_70161823_70163617_70163735_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199760_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70255577_70255797_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
ENSMUSG00000039298.17_4	chr4	-	5702	38	NIC	ENSMUSG00000039298.17	novel	11847	37	NA	NA	4	-1	combination_of_known_junctions	TRUE	canonical	3	51	junction_10	42.090739921554	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCAGCTGCCTCTGTCCT	NA	False	NA	-5	True	AATAAA	-14	NA	70328676	70141260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_70141352_70141766_70141814_70146834_70146962_70153583_70153728_70156416_70156683_70157521_70157600_70160707_70160833_70161632_70161823_70163617_70163735_70165184_70165212_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199760_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70255577_70255797_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
ENSMUSG00000039307.17_0	chr11	+	2119	13	FSM	ENSMUSG00000039307.17	ENSMUST00000106117.8	2149	13	28	2	28	-2	multi-exon	FALSE	canonical	3	14	junction_2	4.64503916979059	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCCCACCAGCAGAAACT	NA	False	NA	2	True	AATAAA	-18	NA	121095288	121113471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_121095669_121098464_121098602_121102867_121102978_121104808_121104897_121105585_121105751_121107718_121107903_121108913_121108986_121109368_121109565_121110666_121110750_121111908_121111988_121112061_121112164_121112326_121112417_121113038
ENSMUSG00000039308.7_0	chr14	-	3649	15	NIC	ENSMUSG00000039308.7	novel	3907	15	NA	NA	221	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_2	16.2331545339299	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTCTGCTTCATTGC	9644	False	NA	-1	True	AATAAA	-15	NA	20784409	20773797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_20774429_20774528_20774632_20774815_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778330_20778518_20778674_20778943_20779032_20779233_20780546_20783617_20783713_20784282
ENSMUSG00000039308.7_1	chr14	-	3686	15	FSM	ENSMUSG00000039308.7	ENSMUST00000223679.2	3907	15	221	0	221	0	multi-exon	FALSE	canonical	3	47	junction_10	9.23281636117516	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTCTGCTTCATTGC	9644	False	NA	-1	True	AATAAA	-15	NA	20784409	20773797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20774429_20774528_20774632_20774778_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778330_20778518_20778674_20778943_20779032_20779233_20780546_20783617_20783713_20784282
ENSMUSG00000039308.7_3	chr14	-	3613	15	NIC	ENSMUSG00000039308.7	novel	3907	15	NA	NA	219	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_10	18.1518537873785	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTCTGCTTCATTGC	9642	False	NA	-1	True	AATAAA	-15	NA	20784411	20773797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_20774429_20774528_20774632_20774778_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778255_20778518_20778674_20778943_20779032_20779233_20780546_20783617_20783713_20784282
ENSMUSG00000039308.7_5	chr14	-	2503	13	FSM	ENSMUSG00000039308.7	ENSMUST00000047490.6	3305	13	811	-9	-294	0	multi-exon	FALSE	canonical	3	47	junction_10	8.7781293881758	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTCTGCTTCATTGC	NA	False	NA	-1	True	AATAAA	-15	NA	20779584	20773797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20774429_20774528_20774632_20774778_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778330_20778518_20778674_20778943_20779032_20779233
ENSMUSG00000039308.7_7	chr14	-	3784	14	NIC	ENSMUSG00000039308.7	novel	3907	15	NA	NA	221	-2	intron_retention	FALSE	canonical	3	47	junction_9	9.4530919145834	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTTGTCTGCTTCATT	9644	False	NA	-3	True	AATAAA	-13	NA	20784409	20773799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_20774632_20774778_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778330_20778518_20778674_20778943_20779032_20779233_20780546_20783617_20783713_20784282
ENSMUSG00000039313.15_1	chr9	-	7156	4	FSM	ENSMUSG00000039313.15	ENSMUST00000044491.13	7202	4	43	3	43	-3	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAACTTGCATTGAGACTT	NA	False	NA	NA	False	AATAAA	-12	NA	89505135	89469271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_89473354_89478488_89478744_89483094_89485448_89504669
ENSMUSG00000039316.15_0	chr17	-	2859	10	FSM	ENSMUSG00000039316.15	ENSMUST00000044503.14	4029	10	167	1003	-10	0	multi-exon	FALSE	canonical	3	80	junction_4	9.91071249821234	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGTGGTGAGAAGTATT	NA	False	NA	-28	True	AATAAA	-13	NA	50497535	50300287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_50301510_50309659_50309742_50311281_50311386_50343968_50344085_50354324_50354529_50362264_50362656_50393595_50393705_50414097_50414285_50476030_50476188_50497248
ENSMUSG00000039318.13_0	chr1	+	4383	35	FSM	ENSMUSG00000039318.13	ENSMUST00000069652.8	7052	35	17	2652	17	-78	multi-exon	FALSE	canonical	3	69	junction_28	11.2668558845177	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTGCAATCCTGTCTA	NA	False	NA	10	True	AATAAA	-16	NA	184936330	185016304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999272_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
ENSMUSG00000039318.13_1	chr1	+	4325	35	FSM	ENSMUSG00000039318.13	ENSMUST00000194740.6	4418	35	15	78	15	-78	multi-exon	FALSE	canonical	2	15	junction_25	17.4221203306776	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTGCAATCCTGTCTA	NA	False	NA	10	True	AATAAA	-16	NA	184936328	185016304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999212_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
ENSMUSG00000039318.13_20	chr1	+	2909	22	ISM	ENSMUSG00000039318.13	ENSMUST00000069652.8	7052	35	46915	2652	-12647	-78	3prime_fragment	FALSE	canonical	3	69	junction_15	11.9279773637834	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTGCAATCCTGTCTA	NA	False	NA	10	True	AATAAA	-16	NA	184983228	185016304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999272_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
ENSMUSG00000039323.19_2	chr1	+	1307	4	FSM	ENSMUSG00000039323.19	ENSMUST00000047328.11	1307	4	-11	11	-11	-4	multi-exon	FALSE	canonical	3	3391	junction_2	148.912353043288	2708	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAAAGTGTGTGTC	1279	False	NA	7	True	ATTAAA	-7	NA	72863650	72891622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_72864124_72888244_72888472_72888722_72888864_72891156
ENSMUSG00000039328.12_0	chr8	+	1742	6	FSM	ENSMUSG00000039328.12	ENSMUST00000217278.2	1726	6	13	-29	12	29	multi-exon	FALSE	canonical	2	5	junction_2	3.55527776692624	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAAATTTTTGGCTTGTG	NA	False	NA	6	True	ATTAAA	-20	NA	31601870	31619690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_31602201_31608458_31608616_31614879_31614926_31615193_31615236_31618279_31618363_31618606
ENSMUSG00000039329.9_0	chr11	+	1729	3	FSM	ENSMUSG00000039329.9	ENSMUST00000039088.9	1745	3	12	4	-2	-4	multi-exon	FALSE	canonical	3	732	junction_1	1	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTTTTATGTGTATG	NA	False	NA	22	True	AATAAA	-16	NA	121036980	121039141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_121037049_121037353_121037428_121037554
ENSMUSG00000039329.9_3	chr11	+	1148	1	ISM	ENSMUSG00000039329.9	ENSMUST00000039088.9	1745	3	1026	3	1012	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTGTTTTATGTGTATGG	NA	False	NA	23	True	AATAAA	-17	NA	121037994	121039142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_121038000_121039100
ENSMUSG00000039330.6_0	chr19	-	1598	7	ISM	ENSMUSG00000039330.6	ENSMUST00000235569.2	1726	8	1300	0	1300	0	3prime_fragment	FALSE	canonical	3	8	junction_6	13.7234592334926	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACAGTGTGAGACTTCT	6284	False	NA	NA	False	ATTAAA	-13	NA	5451254	5440076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5440226_5440636_5440756_5440941_5441042_5444310_5444482_5449940_5450089_5450261_5450966_5451047
ENSMUSG00000039330.6_1	chr19	-	1032	6	ISM	ENSMUSG00000039330.6	ENSMUST00000235569.2	1726	8	1948	0	1948	0	3prime_fragment	TRUE	canonical	3	37	junction_4	4.9152822909778	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACAGTGTGAGACTTCT	6932	False	NA	NA	False	ATTAAA	-13	NA	5450606	5440076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5440226_5440636_5440756_5440941_5441042_5444310_5444482_5449940_5450089_5450261
ENSMUSG00000039337.4_0	chr11	-	1674	3	FSM	ENSMUSG00000039337.4	ENSMUST00000039146.4	2046	3	368	4	368	-4	multi-exon	FALSE	canonical	3	61	junction_1	13.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGTCTTTTGCAGTCTCC	NA	False	NA	-4	True	AATAAA	-15	NA	121009135	121007044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_121008523_121008652_121008727_121009013
ENSMUSG00000039337.4_1	chr11	-	1181	1	ISM	ENSMUSG00000039337.4	ENSMUST00000039146.4	2046	3	1280	2	1280	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTTTTGCAGTCTCCTC	NA	False	NA	-2	True	AATAAA	-17	NA	121008223	121007042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_121007000_121008200
ENSMUSG00000039337.4_2	chr11	-	1806	2	NIC	ENSMUSG00000039337.4	novel	2046	3	NA	NA	368	-2	intron_retention	FALSE	canonical	3	88	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTTTTGCAGTCTCCTC	NA	False	NA	-2	True	AATAAA	-17	NA	121009135	121007042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_121008727_121009013
ENSMUSG00000039345.17_0	chr16	+	1347	11	FSM	ENSMUSG00000039345.17	ENSMUST00000046470.16	1825	11	-7	485	-7	3	multi-exon	FALSE	canonical	3	136	junction_3	20.7113495455994	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTGCCCTTGAGATGCT	NA	False	NA	6	True	AATAAA	-15	NA	8288644	8308063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_8288730_8291694_8291831_8295830_8296194_8299990_8300032_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
ENSMUSG00000039345.17_5	chr16	+	1307	10	NIC	ENSMUSG00000039345.17	novel	1825	11	NA	NA	-7	4	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	49.6680337868021	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGCCCTTGAGATGCTG	NA	False	NA	7	True	AATAAA	-16	NA	8288644	8308064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_8288730_8291694_8291831_8295830_8296194_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
ENSMUSG00000039347.8_0	chr6	+	1712	4	FSM	ENSMUSG00000039347.8	ENSMUST00000040361.8	1789	4	55	22	5	-22	multi-exon	FALSE	canonical	3	94	junction_1	1.24721912892465	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGGTTTAGTTAGCCA	6259	False	NA	5	True	AATAAA	-13	NA	48514603	48518713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48514789_48516157_48516206_48516973_48517101_48517361
ENSMUSG00000039347.8_3	chr6	+	1056	1	ISM	ENSMUSG00000039347.8	ENSMUST00000040361.8	1789	4	3109	22	3059	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGGTTTAGTTAGCCA	9313	False	NA	5	True	AATAAA	-13	NA	48517657	48518713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_48517700_48518700
ENSMUSG00000039349.6_1	chr1	-	1551	1	ISM	ENSMUSG00000039349.6	ENSMUST00000048308.6	3035	2	9734	8	9734	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGTGGAGGGCTGTG	7232	False	NA	-11	True	AATAAA	-20	NA	184605681	184604130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_184604100_184605700
ENSMUSG00000039349.6_2	chr1	-	948	2	FSM	ENSMUSG00000039349.6	ENSMUST00000048308.6	3035	2	174	1913	174	-1913	multi-exon	FALSE	canonical	3	22	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCTATCTCCCCCATC	NA	False	NA	-2	True	AATACA	-21	NA	184615241	184606035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_184606625_184614882
ENSMUSG00000039354.17_1	chr1	+	3035	17	FSM	ENSMUSG00000039354.17	ENSMUST00000047615.15	3059	17	20	4	20	-4	multi-exon	FALSE	canonical	3	73	junction_6	11.1563813017483	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCCTGTATTCCGTTTG	NA	False	NA	5	True	AATAAA	-12	NA	72622429	72672289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_72622598_72624796_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
ENSMUSG00000039354.17_14	chr1	+	3026	17	FSM	ENSMUSG00000039354.17	ENSMUST00000152225.2	2994	17	-36	4	-36	-4	multi-exon	FALSE	canonical	2	6	junction_1	25.2319706671913	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCCTGTATTCCGTTTG	NA	False	NA	5	True	AATAAA	-12	NA	72622737	72672289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_72622897_72624796_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
ENSMUSG00000039354.17_15	chr1	+	2512	16	ISM	ENSMUSG00000039354.17	ENSMUST00000152225.2	2994	17	2378	4	355	-4	3prime_fragment	FALSE	canonical	3	73	junction_5	11.4348395509319	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCCTGTATTCCGTTTG	NA	False	NA	5	True	AATAAA	-12	NA	72625151	72672289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
ENSMUSG00000039354.17_19	chr1	+	2021	14	ISM	ENSMUSG00000039354.17	ENSMUST00000152225.2	2994	17	7475	5	5452	-5	3prime_fragment	FALSE	canonical	3	73	junction_3	11.8166465672235	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAGCCTGTATTCCGTTT	NA	False	NA	4	True	AATAAA	-11	NA	72630248	72672288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
ENSMUSG00000039356.16_2	chr2	+	1625	9	FSM	ENSMUSG00000039356.16	ENSMUST00000038474.14	1686	9	17	44	-2	-44	multi-exon	FALSE	canonical	3	842	junction_6	46.6797600679352	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31560743	31571317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
ENSMUSG00000039356.16_28	chr2	+	173	1	ISM	ENSMUSG00000039356.16	ENSMUST00000038474.14	1686	9	10418	44	2849	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31571144	31571317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_31571100_31571300
ENSMUSG00000039357.3_0	chr14	+	4144	3	FSM	ENSMUSG00000039357.3	ENSMUST00000048016.3	4163	3	12	7	3	-7	multi-exon	FALSE	canonical	3	28	junction_1	5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTACATGGTTTCTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	20745047	20751077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20745767_20745855_20746482_20748278
ENSMUSG00000039357.3_2	chr14	+	2926	2	FSM	ENSMUSG00000039357.3	ENSMUST00000225804.2	3422	2	361	135	361	-135	multi-exon	FALSE	canonical	3	38	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATTGCTTAACCTATTT	NA	False	NA	NA	False	AGTAAA	-22	NA	20745405	20750128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20746482_20748278
ENSMUSG00000039357.3_4	chr14	+	1857	1	ISM	ENSMUSG00000039357.3	ENSMUST00000048016.3	4163	3	4190	2	4181	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGGTTTCTTTATTACA	NA	False	NA	NA	False	AATAAA	-21	NA	20749225	20751082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20749200_20751100
ENSMUSG00000039361.12_0	chr7	+	3454	19	NIC	ENSMUSG00000039361.12	novel	3511	20	NA	NA	-9	-2	combination_of_known_junctions	FALSE	canonical	3	52	junction_13	32.2637663220516	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACATGTTACGGTGTT	NA	False	NA	11	True	AATAAA	-12	NA	89779462	89858132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89838357_89838466_89840348_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
ENSMUSG00000039361.12_1	chr7	+	3441	19	FSM	ENSMUSG00000039361.12	ENSMUST00000207225.2	3489	19	42	6	-9	0	multi-exon	FALSE	canonical	3	87	junction_13	27.4656350938971	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATGTTACGGTGTTCT	NA	False	NA	13	True	AATAAA	-14	NA	89779462	89858134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89838357_89838466_89840363_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
ENSMUSG00000039361.12_2	chr7	+	3601	20	NIC	ENSMUSG00000039361.12	novel	3528	21	NA	NA	13	-2	combination_of_known_junctions	FALSE	canonical	3	16	junction_12	45.9396207370349	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACATGTTACGGTGTT	NA	False	NA	11	True	AATAAA	-12	NA	89779450	89858132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89831426_89831577_89838357_89838466_89840363_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
ENSMUSG00000039361.12_39	chr7	+	4063	3	ISM	ENSMUSG00000039361.12	ENSMUST00000207084.2	2929	17	27586	6	0	-2	3prime_fragment	FALSE	canonical	3	187	junction_1	6.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACATGTTACGGTGTT	NA	False	NA	11	True	AATAAA	-12	NA	89842306	89858132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_89844923_89846123_89846229_89856790
ENSMUSG00000039361.12_40	chr7	+	1026	1	ISM	ENSMUSG00000039361.12	ENSMUST00000207225.2	3489	19	77688	6	12669	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATGTTACGGTGTTCT	NA	False	NA	13	True	AATAAA	-14	NA	89857108	89858134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_89857100_89858100
ENSMUSG00000039361.12_8	chr7	+	3588	20	FSM	ENSMUSG00000039361.12	ENSMUST00000208742.2	3361	20	-231	4	9	0	multi-exon	FALSE	canonical	3	16	junction_12	48.3518384036048	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATGTTACGGTGTTCT	NA	False	NA	13	True	AATAAA	-14	NA	89779480	89858134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89831426_89831577_89838357_89838466_89840348_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
ENSMUSG00000039367.12_1	chr14	+	4428	23	FSM	ENSMUSG00000039367.12	ENSMUST00000048657.10	4461	23	29	4	1	-2	multi-exon	FALSE	canonical	3	291	junction_9	29.806850674089	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCCCTCTCATTACTCG	NA	False	NA	11	True	AATAAA	-14	NA	20724404	20744916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
ENSMUSG00000039367.12_5	chr14	+	4497	24	NIC	ENSMUSG00000039367.12	novel	4196	24	NA	NA	1	-2	intron_retention	FALSE	canonical	3	56	junction_6	85.7457665656559	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCCCTCTCATTACTCG	NA	False	NA	11	True	AATAAA	-14	NA	20724404	20744916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20735279_20735349_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
ENSMUSG00000039382.13_16	chrX	+	1550	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115689.10	1568	11	2	16	1	3	multi-exon	FALSE	canonical	3	26	junction_1	58.911883351324	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTATGACTTGACCTCA	4040	False	NA	1	True	AATAAA	-14	NA	7588489	7594424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7588618_7590091_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUSG00000039382.13_19	chrX	+	1747	12	NIC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	75.0007162500234	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATGACTTGACCTCAAG	4038	False	NA	3	True	AATAAA	-16	NA	7588487	7594426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7588618_7589803_7589993_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUSG00000039382.13_37	chrX	+	1350	11	NIC	ENSMUSG00000039382.13	novel	955	8	NA	NA	107	2	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	55.2814616304598	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTTTTGTGACTGGAGT	5441	False	NA	15	True	AATAAA	-17	NA	7589890	7594246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7589993_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUSG00000039382.13_41	chrX	+	1596	10	ISM	ENSMUSG00000039382.13	ENSMUST00000115687.8	1299	11	754	-184	136	5	3prime_fragment	FALSE	canonical	3	181	junction_9	21.9747329651327	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATGACTTGACCTCAAG	5470	False	NA	3	True	AATAAA	-16	NA	7589919	7594426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUSG00000039382.13_44	chrX	+	1141	6	ISM	ENSMUSG00000039382.13	ENSMUST00000208517.2	755	7	1774	-345	325	5	3prime_fragment	FALSE	canonical	3	181	junction_5	22.2261107708929	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATGACTTGACCTCAAG	7916	False	NA	3	True	AATAAA	-16	NA	7592365	7594426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUSG00000039382.13_7	chrX	+	1550	11	FSM	ENSMUSG00000039382.13	ENSMUST00000043045.10	1609	11	34	25	1	-1	multi-exon	FALSE	canonical	3	94	junction_1	40.4807361593141	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCATTTATGACTTGAC	4040	False	NA	-3	True	AATAAA	-10	NA	7588489	7594420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUSG00000039384.9_1	chr1	+	2596	4	FSM	ENSMUSG00000039384.9	ENSMUST00000048655.8	2792	4	57	139	57	-139	multi-exon	FALSE	canonical	3	8	junction_1	4.08248290463863	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	183766634	183807694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_183766767_183768997_183769850_183801048_183801421_183806454
ENSMUSG00000039391.12_0	chr7	-	2578	15	FSM	ENSMUSG00000039391.12	ENSMUST00000041195.6	2439	15	102	-241	102	0	multi-exon	FALSE	canonical	0	0	junction_1	0.494871659305393	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGGATGGTGATTTATG	NA	False	NA	NA	False	AATAAA	-17	NA	89552724	89515355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_89515855_89518828_89518955_89524882_89525104_89525296_89525376_89526611_89526785_89529335_89529441_89530821_89530969_89531499_89531591_89535353_89535478_89536889_89537012_89539599_89539680_89542319_89542577_89545904_89546062_89547245_89547308_89552389
ENSMUSG00000039395.9_0	chr1	-	2454	5	FSM	ENSMUSG00000039395.9	ENSMUST00000048860.9	2284	5	37	-207	37	207	multi-exon	FALSE	canonical	3	578	junction_1	58.0215477215146	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGAGTGTGTGTTATAT	4259	False	NA	-6	True	ATTAAA	-21	NA	72251429	72198393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_72200179_72201480_72201645_72203230_72203322_72231201_72231362_72251175
ENSMUSG00000039395.9_1	chr1	-	1426	1	Genic_Genomic	ENSMUSG00000039395.9	novel	NA	NA	NA	NA	51645	205	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTGAGTGTGTGTTAT	1499	False	NA	-8	True	ATTAAA	-19	NA	72199821	72198395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_-_72198400_72199800
ENSMUSG00000039395.9_3	chr1	-	2154	4	ISM	ENSMUSG00000039395.9	ENSMUST00000048860.9	2284	5	20148	-204	20148	204	3prime_fragment	FALSE	canonical	3	578	junction_1	33.5360502544153	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTTGAGTGTGTGTTA	5050	False	NA	-9	True	ATTAAA	-18	NA	72231318	72198396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_72200179_72201480_72201645_72203230_72203322_72231201
ENSMUSG00000039396.12_1	chr8	-	2188	10	FSM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	65	0	-34	0	multi-exon	FALSE	canonical	3	23	junction_4	6.19039478985961	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTTTTGTAAGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	54092035	54039901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_54040363_54041959_54042135_54052133_54052555_54053985_54054156_54058667_54058835_54060362_54060438_54061749_54061964_54062438_54062574_54076652_54076778_54091790
ENSMUSG00000039396.12_2	chr8	-	458	1	ISM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	51741	0	4281	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTTTTGTAAGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	54040359	54039901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_54039900_54040400
ENSMUSG00000039396.12_4	chr8	-	1711	4	ISM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	37461	0	9825	0	3prime_fragment	FALSE	canonical	3	32	junction_3	5.24933858267454	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTTTTGTAAGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	54054639	54039901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_54040363_54041959_54042135_54052133_54052555_54053985
ENSMUSG00000039396.12_5	chr8	-	2583	3	ISM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	38020	0	-9440	0	intron_retention	FALSE	canonical	3	42	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTTTTGTAAGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	54054080	54039901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_54040363_54041959_54042135_54052133
ENSMUSG00000039396.12_8	chr8	-	592	2	ISM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	50010	0	2550	0	3prime_fragment	FALSE	canonical	3	42	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTTTTGTAAGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	54042090	54039901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_54040363_54041959
ENSMUSG00000039410.17_0	chr4	-	8577	17	NIC	ENSMUSG00000039410.17	novel	8601	17	NA	NA	28	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	7.82998044378145	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTCGGTGCCTGCAAGC	NA	False	NA	NA	False	AATAAA	-16	NA	154721295	154400580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_154405380_154406727_154406903_154407703_154407938_154412716_154412892_154413120_154413291_154418831_154418910_154419549_154419720_154422099_154422188_154425177_154426595_154429778_154429933_154430451_154430600_154432380_154432592_154439703_154439807_154451634_154451773_154561095_154561147_154613038_154613389_154721179
ENSMUSG00000039410.17_1	chr4	-	3374	6	NIC	ENSMUSG00000039410.17	novel	8429	16	NA	NA	1	-2358	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	8.81816307401944	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAGCAAGGTGTGTGC	NA	False	NA	-9	True	NA	NA	NA	154419308	154402939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_154405380_154407703_154407938_154412716_154412892_154413120_154413291_154418831_154418910_154419031
ENSMUSG00000039410.17_10	chr4	-	3120	6	ISM	ENSMUSG00000039410.17	ENSMUST00000070313.14	8429	16	301751	2358	-193	-2358	3prime_fragment	FALSE	canonical	2	5	junction_1	8	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAGCAAGGTGTGTGC	NA	False	NA	-9	True	NA	NA	NA	154419572	154402939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_154405380_154407703_154407938_154412716_154412892_154413120_154413291_154418831_154418910_154419549
ENSMUSG00000039410.17_11	chr4	-	3270	5	NNC	ENSMUSG00000039410.17	novel	8429	16	NA	NA	5233	-2358	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	9.73396116696589	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAGCAAGGTGTGTGC	NA	False	NA	-9	True	NA	NA	NA	154414076	154402939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_154405380_154407703_154407938_154412716_154412892_154413120_154413291_154413825
ENSMUSG00000039410.17_12	chr4	-	6019	16	FSM	ENSMUSG00000039410.17	ENSMUST00000070313.14	8429	16	52	2358	-17	-2358	multi-exon	FALSE	canonical	0	0	junction_13	7.69299825960088	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAGCAAGGTGTGTGC	NA	False	NA	-9	True	NA	NA	NA	154721271	154402939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_154405380_154407703_154407938_154412716_154412892_154413120_154413291_154418831_154418910_154419549_154419720_154422099_154422188_154425177_154426595_154429778_154429933_154430451_154430600_154432380_154432592_154439703_154439807_154451634_154451773_154561095_154561147_154613038_154613389_154721179
ENSMUSG00000039410.17_2	chr4	-	1357	1	ISM	ENSMUSG00000039410.17	ENSMUST00000030902.13	8598	17	317027	2358	15013	-2358	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAGCAAGGTGTGTGC	NA	False	NA	-9	True	NA	NA	NA	154404296	154402939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_154402900_154404300
ENSMUSG00000039410.17_3	chr4	-	3347	7	NIC	ENSMUSG00000039410.17	novel	8598	17	NA	NA	-4	-2360	combination_of_known_junctions	FALSE	canonical	3	7	junction_6	6.36177822799744	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAAGAGCAAGGTGTGT	NA	False	NA	-11	True	NA	NA	NA	154419383	154402941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_154405380_154406727_154406903_154407703_154407938_154412716_154412892_154413120_154413291_154418831_154418910_154419306
ENSMUSG00000039410.17_4	chr4	-	3164	6	NIC	ENSMUSG00000039410.17	novel	8429	16	NA	NA	0	-2364	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	8.38093073590279	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCTCAGAAAGAGCAAGGT	NA	False	NA	-15	True	NA	NA	NA	154419379	154402945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_154405380_154407703_154407938_154412716_154412892_154413120_154413291_154418831_154418910_154419306
ENSMUSG00000039410.17_5	chr4	-	3547	7	NIC	ENSMUSG00000039410.17	novel	8598	17	NA	NA	3	-2358	combination_of_known_junctions	FALSE	canonical	2	5	junction_6	6.91415617089718	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAGCAAGGTGTGTGC	NA	False	NA	-9	True	NA	NA	NA	154419306	154402939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_154405380_154406727_154406903_154407703_154407938_154412716_154412892_154413120_154413291_154418831_154418910_154419031
ENSMUSG00000039410.17_7	chr4	-	3445	6	NNC	ENSMUSG00000039410.17	novel	8598	17	NA	NA	5233	-2358	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_5	7.55248303539968	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAGCAAGGTGTGTGC	NA	False	NA	-9	True	NA	NA	NA	154414076	154402939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_154405380_154406727_154406903_154407703_154407938_154412716_154412892_154413120_154413291_154413825
ENSMUSG00000039410.17_8	chr4	-	3295	7	ISM	ENSMUSG00000039410.17	ENSMUST00000030902.13	8598	17	301751	2358	-193	-2358	3prime_fragment	FALSE	canonical	2	9	junction_6	5.85234995535981	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAGCAAGGTGTGTGC	NA	False	NA	-9	True	NA	NA	NA	154419572	154402939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_154405380_154406727_154406903_154407703_154407938_154412716_154412892_154413120_154413291_154418831_154418910_154419549
ENSMUSG00000039414.11_0	chr17	-	6419	36	FSM	ENSMUSG00000039414.11	ENSMUST00000097281.4	6388	36	-40	9	0	-2	multi-exon	FALSE	canonical	3	55	junction_23	13.6878912673552	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACAGAGCATTCATACA	NA	False	NA	NA	False	AATAAA	-15	NA	79142793	79060335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_79060766_79062639_79062854_79064291_79064444_79067844_79068070_79069428_79069696_79070361_79070507_79072756_79072885_79074308_79074564_79075794_79076033_79080966_79081147_79095633_79095703_79098863_79099046_79102523_79102776_79103250_79103491_79103812_79103958_79109041_79109212_79110800_79110991_79113375_79113536_79115758_79115950_79117936_79118043_79120523_79120700_79121500_79121665_79122918_79123029_79123660_79123761_79124901_79125055_79126234_79126347_79128049_79128301_79128843_79129000_79131924_79132175_79133660_79133819_79135360_79135533_79136921_79137072_79137987_79138097_79138802_79139015_79141524_79141673_79142734
ENSMUSG00000039414.11_13	chr17	-	6334	35	ISM	ENSMUSG00000039414.11	ENSMUST00000097281.4	6388	36	1107	9	1107	-2	3prime_fragment	TRUE	canonical	3	55	junction_23	13.8786448188186	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACAGAGCATTCATACA	NA	False	NA	NA	False	AATAAA	-15	NA	79141646	79060335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_79060766_79062639_79062854_79064291_79064444_79067844_79068070_79069428_79069696_79070361_79070507_79072756_79072885_79074308_79074564_79075794_79076033_79080966_79081147_79095633_79095703_79098863_79099046_79102523_79102776_79103250_79103491_79103812_79103958_79109041_79109212_79110800_79110991_79113375_79113536_79115758_79115950_79117936_79118043_79120523_79120700_79121500_79121665_79122918_79123029_79123660_79123761_79124901_79125055_79126234_79126347_79128049_79128301_79128843_79129000_79131924_79132175_79133660_79133819_79135360_79135533_79136921_79137072_79137987_79138097_79138802_79139015_79141524
ENSMUSG00000039419.18_0	chr6	+	1380	4	FSM	ENSMUSG00000039419.18	ENSMUST00000199100.5	6279	4	2	4897	2	-258	multi-exon	FALSE	canonical	3	21	junction_1	8.01387685344754	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCTTTTGTTTTTTATTG	NA	False	NA	2	True	AATAAA	-15	NA	47221322	47276246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_47221484_47248073_47248314_47273652_47273734_47275348
ENSMUSG00000039427.15_0	chr16	+	1739	13	FSM	ENSMUSG00000039427.15	ENSMUST00000100196.9	1755	13	16	0	-1	0	multi-exon	TRUE	canonical	3	181	junction_11	10.4029910228848	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGAAGTGTTTGCTCT	1296	False	NA	17	True	AATAAA	-18	NA	5051500	5062767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304
ENSMUSG00000039428.12_0	chr7	-	3184	15	FSM	ENSMUSG00000039428.12	ENSMUST00000041968.11	3700	15	27	489	0	-489	multi-exon	FALSE	canonical	3	153	junction_2	15.7941154115276	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGGACCTCATTTTCTC	NA	False	NA	-27	True	ATTAAA	-19	NA	88987968	88789410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_88791179_88792988_88793057_88793864_88793964_88797177_88797255_88800620_88800685_88803235_88803404_88805634_88805705_88808076_88808224_88814332_88814375_88845320_88845368_88893128_88893195_88929174_88929209_88953888_88953982_88956344_88956473_88987655
ENSMUSG00000039428.12_7	chr7	-	1789	1	ISM	ENSMUSG00000039428.12	ENSMUST00000041968.11	3700	15	196961	324	3671	-324	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTCAAAAAGGTGCATTT	NA	False	NA	-16	True	AGTAAA	-7	NA	88791034	88789245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_88789200_88791000
ENSMUSG00000039431.17_0	chr8	-	2478	14	FSM	ENSMUSG00000039431.17	ENSMUST00000048898.17	2488	14	11	-1	-6	1	multi-exon	TRUE	canonical	3	263	junction_13	15.5985130530912	496	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATGTAATCATTTTATT	NA	False	NA	39	True	AATAAA	-24	NA	41087808	41004140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_41004955_41007311_41007439_41008816_41008958_41011196_41011398_41013897_41013948_41015610_41015737_41017000_41017111_41034455_41034589_41040090_41040226_41043452_41043582_41050325_41050484_41059801_41059965_41061936_41062060_41087740
ENSMUSG00000039449.15_0	chr2	-	3427	10	FSM	ENSMUSG00000039449.15	ENSMUST00000035721.14	3522	10	-20	115	0	-115	multi-exon	FALSE	canonical	3	138	junction_5	16.2305914484172	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAGTTACAACTCTATT	NA	False	NA	-17	True	TTTAAA	-19	NA	4656917	4626983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
ENSMUSG00000039449.15_2	chr2	-	1651	1	ISM	ENSMUSG00000039449.15	ENSMUST00000035721.14	3522	10	28263	115	28258	-115	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAGTTACAACTCTATT	NA	False	NA	-17	True	TTTAAA	-19	NA	4628634	4626983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_4627000_4628600
ENSMUSG00000039450.12_1	chr11	-	847	8	FSM	ENSMUSG00000039450.12	ENSMUST00000026144.5	892	8	20	25	-17	1	multi-exon	FALSE	canonical	3	81	junction_3	11.7438650940369	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGTGTGCTGATTCTCC	10004	False	NA	-29	True	AATAAA	-12	NA	120618087	120616249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
ENSMUSG00000039450.12_2	chr11	-	826	7	FSM	ENSMUSG00000039450.12	ENSMUST00000106148.10	830	7	-21	25	17	1	multi-exon	FALSE	canonical	3	29	junction_2	29.9035486560077	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGTGTGCTGATTCTCC	10001	False	NA	-29	True	AATAAA	-12	NA	120618090	120616249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120616434_120616563_120616723_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
ENSMUSG00000039450.12_4	chr11	-	906	7	FSM	ENSMUSG00000039450.12	ENSMUST00000125242.8	910	7	5	-1	4	1	multi-exon	FALSE	canonical	3	81	junction_3	12.2202018532156	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGTGTGCTGATTCTCC	6920	False	NA	-29	True	AATAAA	-12	NA	120618065	120616249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617138_120617236_120617392_120617824_120617923_120618003
ENSMUSG00000039450.12_5	chr11	-	1068	6	NIC	ENSMUSG00000039450.12	novel	914	7	NA	NA	-8	-6	intron_retention	FALSE	canonical	3	81	junction_2	13.1605471010897	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGGCACAGATCTGTGC	6907	False	NA	-10	True	AATAAA	-31	NA	120618078	120616230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120616682_120616767_120616833_120616913_120617138_120617236_120617392_120617824_120617923_120618003
ENSMUSG00000039452.7_1	chr9	-	2548	6	NIC	ENSMUSG00000039452.7	novel	2543	7	NA	NA	-38	0	intron_retention	TRUE	canonical	1	2	junction_3	1.85472369909914	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTGTCATTGTGTGGT	NA	False	NA	NA	False	AATAAA	-12	NA	65977039	65972457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_65974502_65974794_65974863_65975408_65975504_65975967_65976073_65976455_65976540_65976887
ENSMUSG00000039452.7_2	chr9	-	2597	7	FSM	ENSMUSG00000039452.7	ENSMUST00000044711.7	2543	7	-57	3	-57	-3	multi-exon	FALSE	canonical	0	0	junction_2	2.43241991988774	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACATTTGTCATTGTGT	NA	False	NA	NA	False	AATAAA	-9	NA	65977058	65972460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_65974502_65974794_65974863_65975061_65975095_65975408_65975504_65975967_65976073_65976455_65976540_65976887
ENSMUSG00000039456.11_1	chr16	+	4049	17	NNC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	10	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	152.272050435233	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGATAAAGGTAACTGAAAGT	1098	False	NA	13	True	AATAAA	-24	NA	93629132	93672958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642234_93644164_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
ENSMUSG00000039456.11_4	chr16	+	4050	17	FSM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	126	2	-10	-2	multi-exon	FALSE	non_canonical	1	193	junction_4	108.324454764379	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGATAAAGGTAACTGAAAGT	1100	False	NA	13	True	AATAAA	-24	NA	93629134	93672958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
ENSMUSG00000039456.11_97	chr16	+	1932	3	ISM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	38670	2	10278	-2	3prime_fragment	FALSE	canonical	3	566	junction_1	20	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGATAAAGGTAACTGAAAGT	NA	False	NA	13	True	AATAAA	-24	NA	93667678	93672958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_93668141_93670124_93670283_93671646
ENSMUSG00000039457.5_0	chr16	-	6112	22	FSM	ENSMUSG00000039457.5	ENSMUST00000035672.5	6217	22	-55	160	-55	-160	multi-exon	FALSE	canonical	2	2	junction_13	2.19564607302829	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCACAGCAAGTATGACT	NA	False	NA	NA	False	AATAAA	-20	NA	4950340	4904314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4907693_4909708_4909802_4910228_4910346_4911059_4911144_4912272_4912424_4914489_4914684_4915508_4915648_4915738_4915918_4917846_4918005_4918194_4918293_4919237_4919390_4920157_4920305_4920419_4920543_4922314_4922411_4922537_4922646_4922727_4922890_4923786_4923829_4923914_4924035_4924625_4924747_4925320_4925476_4930855_4930956_4950145
ENSMUSG00000039457.5_3	chr16	-	2748	1	ISM	ENSMUSG00000039457.5	ENSMUST00000035672.5	6217	22	43222	161	43211	-161	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTCACAGCAAGTATGAC	NA	False	NA	NA	False	AATAAA	-19	NA	4907063	4904315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_4904300_4907100
ENSMUSG00000039458.16_0	chr15	+	4274	16	FSM	ENSMUSG00000039458.16	ENSMUST00000174418.8	4359	16	-44	129	-25	-4	multi-exon	FALSE	canonical	3	72	junction_5	54.8326747680817	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACTGTGCAAGTTTGGA	4	True	NA	24	True	ATTAAA	-27	NA	12205145	12272076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236207_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266692_12266855_12269587
ENSMUSG00000039458.16_1	chr15	+	4293	16	FSM	ENSMUSG00000039458.16	ENSMUST00000038172.16	6840	16	38	2509	-19	-7	multi-exon	FALSE	canonical	3	174	junction_5	33.0552399611452	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACACTGTGCAAGTTT	10	True	NA	21	True	ATTAAA	-24	NA	12205151	12272073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236235_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266692_12266855_12269587
ENSMUSG00000039458.16_61	chr15	+	1990	1	ISM	ENSMUSG00000039458.16	ENSMUST00000038172.16	6840	16	64970	2509	46644	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACACTGTGCAAGTTT	NA	False	NA	21	True	ATTAAA	-24	NA	12270083	12272073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_12270100_12272100
ENSMUSG00000039458.16_9	chr15	+	4325	16	FSM	ENSMUSG00000039458.16	ENSMUST00000174160.3	4489	16	-89	253	1	-7	multi-exon	TRUE	canonical	3	15	junction_14	70.217629948294	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACACTGTGCAAGTTT	21	True	NA	21	True	ATTAAA	-24	NA	12205114	12272073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236235_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266697_12266855_12269587
ENSMUSG00000039461.13_0	chr9	-	1598	3	FSM	ENSMUSG00000039461.13	ENSMUST00000192886.6	1094	3	191	-695	-21	-1	multi-exon	TRUE	canonical	3	19	junction_2	5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGGTGTGGTTATTCA	7306	False	NA	-3	True	ATTAAA	-12	NA	108183168	108180157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108181453_108182524_108182580_108182920
ENSMUSG00000039461.13_1	chr9	-	950	1	ISM	ENSMUSG00000039461.13	ENSMUST00000044725.9	1668	3	2082	1	2040	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGGTGTGGTTATTCA	9367	False	NA	-3	True	ATTAAA	-12	NA	108181107	108180157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_108180200_108181100
ENSMUSG00000039461.13_2	chr9	-	1691	2	ISM	ENSMUSG00000039461.13	ENSMUST00000044725.9	1668	3	269	1	227	-1	3prime_fragment	FALSE	canonical	3	29	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGGTGTGGTTATTCA	7554	False	NA	-3	True	ATTAAA	-12	NA	108182920	108180157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_108181453_108182524
ENSMUSG00000039461.13_3	chr9	-	5333	2	NIC	ENSMUSG00000039461.13	novel	1668	3	NA	NA	16	3784	intron_retention	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACACATCAGTG	7301	False	NA	NA	False	NA	NA	NA	108183173	108176372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108181453_108182920
ENSMUSG00000039463.15_1	chr2	+	4507	17	FSM	ENSMUSG00000039463.15	ENSMUST00000047815.13	4521	17	11	3	0	-1	multi-exon	TRUE	non_canonical	2	49	junction_9	20.9574531790005	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCTGTTGTGTCACGT	NA	False	NA	4	True	AATAAA	-17	NA	167263642	167318917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167288421_167288457_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
ENSMUSG00000039463.15_52	chr2	+	2056	1	ISM	ENSMUSG00000039463.15	ENSMUST00000047815.13	4521	17	53232	1	23789	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTGTTGTGTCACGTGT	NA	False	NA	6	True	AATAAA	-19	NA	167316863	167318919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_167316900_167318900
ENSMUSG00000039463.15_6	chr2	+	4474	16	NIC	ENSMUSG00000039463.15	novel	4521	17	NA	NA	0	0	combination_of_known_junctions	FALSE	non_canonical	2	23	junction_6	29.1803586909643	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTGTTGTGTCACGTGT	NA	False	NA	6	True	AATAAA	-19	NA	167263642	167318919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
ENSMUSG00000039470.16_1	chr8	+	3385	13	FSM	ENSMUSG00000039470.16	ENSMUST00000049389.11	3381	13	-11	7	-11	-7	multi-exon	FALSE	canonical	3	62	junction_3	8.82664841387841	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGTTACTTCCGTCTCCA	1209	False	NA	-5	True	AATAAA	-19	NA	40876844	40938759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_40877211_40898818_40898846_40900091_40900187_40907538_40907660_40909071_40909142_40909703_40909737_40915128_40915250_40917198_40917332_40920469_40920597_40920951_40921045_40925953_40926067_40927775_40927849_40936746
ENSMUSG00000039470.16_2	chr8	+	3373	13	NIC	ENSMUSG00000039470.16	novel	3381	13	NA	NA	-12	-1	intron_retention	FALSE	canonical	2	3	junction_3	22.0359554667669	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTCCGTCTCCATCCAGT	1208	False	NA	1	True	AATAAA	-25	NA	40876843	40938765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_40877211_40898818_40898846_40900091_40900187_40907557_40907660_40909071_40909142_40909703_40909737_40915128_40915250_40917198_40917332_40920469_40920597_40920951_40921045_40925953_40926067_40927775_40927849_40936746
ENSMUSG00000039470.16_6	chr8	+	1292	1	ISM	ENSMUSG00000039470.16	ENSMUST00000049389.11	3381	13	60617	2	-16019	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTCCGTCTCCATCCAG	NA	False	NA	0	True	AATAAA	-24	NA	40937472	40938764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_40937500_40938800
ENSMUSG00000039470.16_7	chr8	+	1369	12	ISM	ENSMUSG00000039470.16	ENSMUST00000049389.11	3381	13	-11	10921	-11	8614	5prime_fragment	FALSE	canonical	3	62	junction_3	9.14980919278991	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAGATGTTTTGATTT	1209	False	NA	NA	False	AATAAA	-12	NA	40876844	40927845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_40877211_40898818_40898846_40900091_40900187_40907538_40907660_40909071_40909142_40909703_40909737_40915128_40915250_40917198_40917332_40920469_40920597_40920951_40921045_40925953_40926067_40927775
ENSMUSG00000039473.9_0	chr16	+	6333	18	FSM	ENSMUSG00000039473.9	ENSMUST00000230703.2	6356	18	19	4	8	0	multi-exon	FALSE	canonical	3	47	junction_17	11.4435578952107	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTTTCCTCATTTT	NA	False	NA	17	True	AATAAA	-17	NA	4867939	4904149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4868646_4872940_4873229_4879845_4879933_4880398_4880495_4880803_4880939_4881536_4881641_4882211_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4899757_4899848_4901919
ENSMUSG00000039473.9_14	chr16	+	6357	18	NIC	ENSMUSG00000039473.9	novel	6455	19	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_2	23.2710818956738	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTTTCCTCATTTT	NA	False	NA	17	True	AATAAA	-17	NA	4867939	4904149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_4868646_4871591_4871706_4872940_4873229_4879845_4879933_4880398_4880495_4880803_4880939_4881536_4881641_4882211_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4901919
ENSMUSG00000039473.9_19	chr16	+	4657	11	ISM	ENSMUSG00000039473.9	ENSMUST00000229126.2	5589	17	13782	6	110	-2	3prime_fragment	FALSE	canonical	3	39	junction_10	12.2837290754884	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGATGTCTTTCCTCATT	1687	False	NA	15	True	AATAAA	-15	NA	4882379	4904147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4901919
ENSMUSG00000039473.9_20	chr16	+	4586	12	ISM	ENSMUSG00000039473.9	ENSMUST00000052449.6	6455	19	14611	0	273	0	3prime_fragment	FALSE	canonical	3	47	junction_11	11.336330830309	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTTTCCTCATTTT	1850	False	NA	17	True	AATAAA	-17	NA	4882542	4904149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4899757_4899848_4901919
ENSMUSG00000039473.9_29	chr16	+	3564	3	ISM	ENSMUSG00000039473.9	ENSMUST00000229126.2	5589	17	26291	5	-1031	-1	3prime_fragment	FALSE	canonical	3	39	junction_2	21	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGATGTCTTTCCTCATTT	8577	False	NA	16	True	AATAAA	-16	NA	4894888	4904148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_4895980_4899281_4899526_4901919
ENSMUSG00000039473.9_3	chr16	+	6239	17	FSM	ENSMUSG00000039473.9	ENSMUST00000229126.2	5589	17	-655	5	11	-1	multi-exon	FALSE	canonical	3	39	junction_16	12.0167526291424	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGATGTCTTTCCTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	4867942	4904148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4868646_4872940_4873229_4879845_4879933_4880398_4880495_4880803_4880939_4881536_4881641_4882211_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4901919
ENSMUSG00000039473.9_30	chr16	+	2900	4	ISM	ENSMUSG00000039473.9	ENSMUST00000052449.6	6455	19	27712	0	-276	0	3prime_fragment	FALSE	canonical	3	47	junction_3	14.8174071805952	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTTTCCTCATTTT	9332	False	NA	17	True	AATAAA	-17	NA	4895643	4904149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_4895980_4899281_4899526_4899757_4899848_4901919
ENSMUSG00000039473.9_33	chr16	+	1949	1	ISM	ENSMUSG00000039473.9	ENSMUST00000230703.2	6356	18	34280	4	6281	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTTTCCTCATTTT	NA	False	NA	17	True	AATAAA	-17	NA	4902200	4904149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_4902200_4904100
ENSMUSG00000039473.9_6	chr16	+	6443	19	FSM	ENSMUSG00000039473.9	ENSMUST00000052449.6	6455	19	10	2	10	-2	multi-exon	FALSE	canonical	3	7	junction_2	22.3737197026631	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGATGTCTTTCCTCATT	NA	False	NA	15	True	AATAAA	-15	NA	4867941	4904147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4868646_4871591_4871706_4872940_4873229_4879845_4879933_4880398_4880495_4880803_4880939_4881536_4881641_4882211_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4899757_4899848_4901919
ENSMUSG00000039474.14_0	chr5	-	3528	8	FSM	ENSMUSG00000039474.14	ENSMUST00000043964.13	3787	8	253	6	-19	-3	multi-exon	FALSE	canonical	3	110	junction_7	10.259888211986	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATAGCCTTGCCTTCTGG	NA	False	NA	-5	True	AATAAA	-12	NA	37146296	37123453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_37126023_37128901_37129054_37130529_37130611_37131077_37131249_37132814_37132960_37134227_37134311_37139401_37139642_37146209
ENSMUSG00000039474.14_9	chr5	-	1763	1	ISM	ENSMUSG00000039474.14	ENSMUST00000043964.13	3787	8	21334	5	9085	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATAGCCTTGCCTTCTGGT	NA	False	NA	-4	True	AATAAA	-13	NA	37125215	37123452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_37123500_37125200
ENSMUSG00000039476.14_0	chr2	+	1180	4	FSM	ENSMUSG00000039476.14	ENSMUST00000041659.7	1441	4	255	6	-130	-6	multi-exon	FALSE	canonical	2	7	junction_1	3.55902608401044	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCCACGAGGCTTCAGA	NA	False	NA	NA	False	AATAAA	-13	NA	30735325	30771257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30735694_30768421_30768604_30769503_30769683_30770806
ENSMUSG00000039476.14_1	chr2	+	2123	3	NIC	ENSMUSG00000039476.14	novel	1441	4	NA	NA	-173	-6	intron_retention	FALSE	canonical	2	7	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCCACGAGGCTTCAGA	NA	False	NA	NA	False	AATAAA	-13	NA	30735282	30771257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_30735694_30768421_30769683_30770806
ENSMUSG00000039477.17_14	chr5	-	2044	7	ISM	ENSMUSG00000039477.17	ENSMUST00000151477.8	6487	16	46153	7	-5487	-7	3prime_fragment	FALSE	canonical	3	137	junction_6	19.3878541589545	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAAACTGTGTGCCTCGT	NA	False	NA	NA	False	ATTAAA	-19	NA	142757264	142740550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_142741415_142745465_142745827_142748744_142748917_142750523_142750653_142750805_142750943_142751667_142751844_142757059
ENSMUSG00000039477.17_15	chr5	-	6342	16	NIC	ENSMUSG00000039477.17	novel	6487	16	NA	NA	141	-7	combination_of_known_junctions	FALSE	canonical	3	90	junction_14	28.7986110776197	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAAACTGTGTGCCTCGT	NA	False	NA	NA	False	ATTAAA	-19	NA	142803276	142740550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_142741415_142745465_142745827_142748744_142748917_142750523_142750653_142750805_142750943_142751667_142751844_142757059_142758059_142759373_142759804_142760963_142761155_142761583_142761731_142761930_142762137_142762400_142762498_142772888_142774515_142775818_142775945_142800769_142801201_142803026
ENSMUSG00000039477.17_17	chr5	-	6332	16	FSM	ENSMUSG00000039477.17	ENSMUST00000151477.8	6487	16	152	3	-130	-3	multi-exon	FALSE	canonical	3	19	junction_8	42.8710728684143	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGTGTGCCTCGTTTCT	NA	False	NA	NA	False	ATTAAA	-23	NA	142803265	142740546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_142741415_142745465_142745827_142748744_142748917_142750523_142750653_142750805_142750943_142751667_142751844_142757059_142758059_142759373_142759801_142760963_142761155_142761583_142761731_142761930_142762137_142762400_142762498_142772888_142774515_142775818_142775945_142800769_142801201_142803026
ENSMUSG00000039477.17_19	chr5	-	5796	15	NIC	ENSMUSG00000039477.17	novel	6487	16	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	12	junction_14	42.149696781537	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAAACTGTGTGCCTCGT	8559	False	NA	NA	False	ATTAAA	-19	NA	142786192	142740550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_142741415_142745465_142745827_142748744_142748917_142750523_142750653_142750805_142750943_142751667_142751844_142757059_142758059_142759373_142759804_142760963_142761155_142761583_142761731_142761930_142762137_142762400_142762498_142772888_142774515_142775818_142775945_142786057
ENSMUSG00000039477.17_23	chr5	-	667	1	NIC	ENSMUSG00000039477.17	novel	9342	25	NA	NA	10560	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAAACTGTGTGCCTCGT	5503	False	NA	NA	False	ATTAAA	-19	NA	142741217	142740550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_142740600_142741200
ENSMUSG00000039477.17_24	chr5	-	4772	13	NIC	ENSMUSG00000039477.17	novel	6487	16	NA	NA	527	-7	combination_of_known_junctions	FALSE	canonical	3	123	junction_8	19.7672217460005	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAAACTGTGTGCCTCGT	2402	False	NA	NA	False	ATTAAA	-19	NA	142773751	142740550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_142741415_142745465_142745827_142748744_142748917_142750523_142750653_142750805_142750943_142751667_142751844_142757059_142758059_142759373_142759804_142760963_142761155_142761583_142761731_142761930_142762137_142762400_142762498_142772888
ENSMUSG00000039477.17_4	chr5	-	881	1	Genic_Genomic	ENSMUSG00000039477.17	novel	NA	NA	NA	NA	11189	49	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACTATGTCTTTGGA	NA	False	NA	NA	False	NA	NA	NA	142711247	142710366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_-_142710400_142711200
ENSMUSG00000039477.17_50	chr5	-	6466	17	NNC	ENSMUSG00000039477.17	novel	6487	16	NA	NA	-109	-7	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_15	45.1725857130185	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAAACTGTGTGCCTCGT	NA	False	NA	NA	False	ATTAAA	-19	NA	142803244	142740550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_142741415_142745465_142745827_142748744_142748917_142750523_142750653_142750805_142750943_142751667_142751844_142757059_142758059_142759373_142759804_142760963_142761155_142761583_142761731_142761930_142762137_142762400_142762498_142772888_142774515_142775818_142775945_142778759_142778916_142800769_142801201_142803026
ENSMUSG00000039477.17_7	chr5	-	1880	3	ISM	ENSMUSG00000039477.17	ENSMUST00000152247.8	9342	25	60454	-49	8612	49	3prime_fragment	FALSE	canonical	3	28	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACTATGTCTTTGGA	NA	False	NA	NA	False	NA	NA	NA	142713824	142710366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_142711943_142712732_142712808_142713595
ENSMUSG00000039477.17_8	chr5	-	2794	4	ISM	ENSMUSG00000039477.17	ENSMUST00000152247.8	9342	25	56417	-43	4575	43	3prime_fragment	FALSE	canonical	3	12	junction_3	7.78888096369861	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTGGAAAAATACTATGTC	NA	False	NA	NA	False	NA	NA	NA	142717861	142710372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_142711943_142712732_142712808_142713595_142713833_142716949
ENSMUSG00000039478.16_0	chr8	+	3275	14	NIC	ENSMUSG00000039478.16	novel	2219	15	NA	NA	547	-11	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	1.73716766009788	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTGCAAATGCAGCCGA	8809	False	NA	4	True	AATAAA	-8	NA	40761045	40839338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_40761452_40788850_40789005_40801980_40802060_40805076_40805125_40807343_40807427_40809896_40809969_40812450_40812490_40819189_40819286_40828577_40828679_40829136_40829309_40831872_40831982_40833712_40833871_40835149_40835219_40837649
ENSMUSG00000039478.16_1	chr8	+	3277	15	FSM	ENSMUSG00000039478.16	ENSMUST00000068999.14	2219	15	575	-1633	575	-13	multi-exon	FALSE	canonical	1	2	junction_7	1.75691055374984	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATGTGCAAATGCAGCC	8837	False	NA	2	True	AATAAA	-6	NA	40761073	40839336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_40761452_40788850_40789005_40793338_40793371_40801980_40802060_40805076_40805125_40807343_40807427_40809896_40809969_40812450_40812490_40819189_40819286_40828577_40828679_40829136_40829309_40831872_40831982_40833712_40833871_40835149_40835219_40837649
ENSMUSG00000039480.15_1	chr10	-	2723	12	FSM	ENSMUSG00000039480.15	ENSMUST00000105512.8	2727	12	1	3	1	-3	multi-exon	FALSE	canonical	3	28	junction_7	20.4676725553911	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGATGTTTGTATTATTGA	NA	False	NA	-4	True	AATAAA	-14	NA	34294534	34179607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274192_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ENSMUSG00000039480.15_11	chr10	-	2641	11	FSM	ENSMUSG00000039480.15	ENSMUST00000130290.2	1978	11	-10	-653	1	-3	multi-exon	FALSE	canonical	2	9	junction_6	26.4469279879535	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGATGTTTGTATTATTGA	NA	False	NA	-4	True	AATAAA	-14	NA	34294534	34179607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ENSMUSG00000039480.15_18	chr10	-	817	7	FSM	ENSMUSG00000039480.15	ENSMUST00000099973.4	761	7	-56	0	2	0	multi-exon	FALSE	canonical	2	4	junction_1	35.3714417134627	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTGCTTCGTAATAC	NA	False	NA	NA	False	AATAAA	-15	NA	34294533	34273063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_34273238_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ENSMUSG00000039480.15_2	chr10	-	2722	12	FSM	ENSMUSG00000039480.15	ENSMUST00000047885.14	2743	12	18	3	5	-3	multi-exon	FALSE	canonical	3	63	junction_7	12.7305190664984	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGATGTTTGTATTATTGA	NA	False	NA	-4	True	AATAAA	-14	NA	34294530	34179607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ENSMUSG00000039481.6_0	chr17	-	1038	3	FSM	ENSMUSG00000039481.6	ENSMUST00000044752.6	1023	3	-15	0	-15	0	multi-exon	FALSE	canonical	3	134	junction_2	5	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTCTGGTCGTTCATGC	NA	False	NA	-3	True	CATAAA	-15	NA	57064545	57058324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57058831_57059308_57059491_57064195
ENSMUSG00000039481.6_1	chr17	-	231	1	Genic_Genomic	ENSMUSG00000039481.6	novel	NA	NA	NA	NA	5976	1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCTGGTCGTTCATGCT	3438	False	NA	-2	True	CATAAA	-16	NA	57058554	57058323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_57058300_57058600
ENSMUSG00000039483.11_0	chr2	-	2085	6	FSM	ENSMUSG00000039483.11	ENSMUST00000041726.4	4147	6	2058	4	-10	-4	multi-exon	FALSE	canonical	3	80	junction_2	13.3356664625357	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTCTGTGTCTTTGTAT	1740	False	NA	-23	True	ATTAAA	-15	NA	30718287	30713112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30714517_30714652_30714740_30715463_30715573_30715666_30715774_30716934_30717111_30718085
ENSMUSG00000039483.11_1	chr2	-	2804	5	FSM	ENSMUSG00000039483.11	ENSMUST00000148036.7	2792	5	-15	3	-4	-3	multi-exon	FALSE	canonical	3	92	junction_4	10.6858551365813	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTGTGTCTTTGTATG	1746	False	NA	-22	True	ATTAAA	-16	NA	30718281	30713111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30714517_30714652_30715573_30715666_30715774_30716934_30717111_30718085
ENSMUSG00000039483.11_3	chr2	-	1863	5	ISM	ENSMUSG00000039483.11	ENSMUST00000129628.8	784	6	1188	-1370	417	-3	3prime_fragment	FALSE	canonical	3	80	junction_2	14.4460202131937	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTGTGTCTTTGTATG	2938	False	NA	-22	True	ATTAAA	-16	NA	30717089	30713111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_30714517_30714652_30714740_30715463_30715573_30715666_30715774_30716934
ENSMUSG00000039483.11_5	chr2	-	2906	4	NIC	ENSMUSG00000039483.11	novel	2792	5	NA	NA	-12	-3	intron_retention	FALSE	canonical	3	92	junction_3	6.48074069840786	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTGTGTCTTTGTATG	1738	False	NA	-22	True	ATTAAA	-16	NA	30718289	30713111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30714517_30714652_30715774_30716934_30717111_30718085
ENSMUSG00000039483.11_9	chr2	-	1407	1	NIC	ENSMUSG00000039483.11	novel	2792	5	NA	NA	2988	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTGTGTCTTTGTATG	5509	False	NA	-22	True	ATTAAA	-16	NA	30714518	30713111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30713100_30714500
ENSMUSG00000039485.9_0	chr10	+	3798	1	FSM	ENSMUSG00000039485.9	ENSMUST00000047935.8	3879	1	13	68	13	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	34173450	34177248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_34173400_34177200
ENSMUSG00000039485.9_1	chr10	+	2306	2	FSM	ENSMUSG00000039485.9	ENSMUST00000213791.2	560	2	-1810	64	4	-64	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	34173441	34177248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_34175405_34176905
ENSMUSG00000039497.9_0	chr10	-	3900	6	NNC	ENSMUSG00000039497.9	novel	4389	6	NA	NA	-154	-1	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_4	68.2026392451201	95	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATCTCTCCTGCTCTGGT	NA	False	NA	-11	True	AATAAA	-13	NA	34083227	34027389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731_34038986_34059691_34060157_34083075
ENSMUSG00000039497.9_1	chr10	-	3905	6	FSM	ENSMUSG00000039497.9	ENSMUST00000048010.9	4389	6	483	1	-155	-1	multi-exon	FALSE	canonical	3	186	junction_4	20.6164982477626	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATCTCTCCTGCTCTGGT	NA	False	NA	-11	True	AATAAA	-13	NA	34083228	34027389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731_34038986_34059687_34060157_34083075
ENSMUSG00000039497.9_2	chr10	-	2082	1	ISM	ENSMUSG00000039497.9	ENSMUST00000048010.9	4389	6	54241	0	1790	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTCTCCTGCTCTGGTG	NA	False	NA	-10	True	AATAAA	-14	NA	34029470	34027388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_34027400_34029500
ENSMUSG00000039497.9_3	chr10	-	3107	4	ISM	ENSMUSG00000039497.9	ENSMUST00000217051.2	1249	5	13432	-2230	-7549	-1	3prime_fragment	FALSE	canonical	3	216	junction_2	15.4560308258262	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATCTCTCCTGCTCTGGT	5500	False	NA	-11	True	AATAAA	-13	NA	34038809	34027389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731
ENSMUSG00000039497.9_4	chr10	-	3335	5	ISM	ENSMUSG00000039497.9	ENSMUST00000048010.9	4389	6	23972	1	-7498	-1	3prime_fragment	FALSE	canonical	3	186	junction_4	23.0488611432322	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATCTCTCCTGCTCTGGT	NA	False	NA	-11	True	AATAAA	-13	NA	34059739	34027389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731_34038986_34059687
ENSMUSG00000039501.15_0	chr2	-	6868	14	FSM	ENSMUSG00000039501.15	ENSMUST00000048988.14	7218	14	342	8	-34	-2	multi-exon	FALSE	canonical	3	14	junction_7	5.9245752350676	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAAAGCCTGTCATCTC	1302	False	NA	NA	False	AATAAA	-10	NA	166904593	166877720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_166881084_166881696_166881793_166882078_166882190_166883613_166883760_166883969_166884125_166884467_166884608_166885915_166886164_166888811_166888927_166889460_166889611_166890352_166890502_166892233_166892366_166897073_166898862_166901951_166902063_166904429
ENSMUSG00000039501.15_1	chr2	-	5668	12	ISM	ENSMUSG00000039501.15	ENSMUST00000048988.14	7218	14	7001	6	4411	0	3prime_fragment	FALSE	canonical	3	14	junction_7	6.1119041141715	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGCCTGTCATCTCTT	7961	False	NA	NA	False	AATAAA	-12	NA	166897934	166877718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166881084_166881696_166881793_166882078_166882190_166883613_166883760_166883969_166884125_166884467_166884608_166885915_166886164_166888811_166888927_166889460_166889611_166890352_166890502_166892233_166892366_166897073
ENSMUSG00000039501.15_12	chr2	-	4231	7	ISM	ENSMUSG00000039501.15	ENSMUST00000048988.14	7218	14	18802	6	-718	0	3prime_fragment	FALSE	canonical	3	22	junction_4	4.64578662158878	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGCCTGTCATCTCTT	NA	False	NA	NA	False	AATAAA	-12	NA	166886133	166877718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166881084_166881696_166881793_166882078_166882190_166883613_166883760_166883969_166884125_166884467_166884608_166885915
ENSMUSG00000039501.15_13	chr2	-	3921	6	ISM	ENSMUSG00000039501.15	ENSMUST00000067584.7	4147	7	896	4	896	-4	3prime_fragment	FALSE	canonical	3	22	junction_4	5.08330601085553	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAAAAAGCCTGTCATC	NA	False	NA	NA	False	AATAAA	-8	NA	166884519	166877722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166881084_166881696_166881793_166882078_166882190_166883613_166883760_166883969_166884125_166884467
ENSMUSG00000039501.15_2	chr2	-	4718	11	ISM	ENSMUSG00000039501.15	ENSMUST00000048988.14	7218	14	12659	6	-6861	0	3prime_fragment	FALSE	canonical	3	14	junction_7	6.4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGCCTGTCATCTCTT	NA	False	NA	NA	False	AATAAA	-12	NA	166892276	166877718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166881084_166881696_166881793_166882078_166882190_166883613_166883760_166883969_166884125_166884467_166884608_166885915_166886164_166888811_166888927_166889460_166889611_166890352_166890502_166892233
ENSMUSG00000039501.15_3	chr2	-	1578	1	ISM	ENSMUSG00000039501.15	ENSMUST00000048988.14	7218	14	25635	10	6115	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAAAAAGCCTGTCATC	NA	False	NA	NA	False	AATAAA	-8	NA	166879300	166877722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166877700_166879300
ENSMUSG00000039501.15_7	chr2	-	6913	14	NIC	ENSMUSG00000039501.15	novel	7218	14	NA	NA	-88	-4	combination_of_known_junctions	FALSE	canonical	2	7	junction_13	7.80911317120645	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAAAAAGCCTGTCATC	1171	False	NA	NA	False	AATAAA	-8	NA	166904724	166877722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_166881084_166881696_166881793_166882078_166882190_166883613_166883760_166883969_166884125_166884467_166884608_166885915_166886164_166888811_166888927_166889460_166889611_166890352_166890502_166892233_166892366_166897073_166898862_166901951_166902063_166904513
ENSMUSG00000039509.9_1	chr8	-	3617	26	FSM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	8	2183	-2	-2183	multi-exon	TRUE	canonical	3	328	junction_14	43.1434815470425	784	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACTTAGGTCTGGATC	NA	False	NA	-23	True	ATTAAA	-17	NA	124675996	124626044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
ENSMUSG00000039512.13_0	chr17	+	8570	21	FSM	ENSMUSG00000039512.13	ENSMUST00000114849.3	8634	21	53	11	53	-11	multi-exon	TRUE	canonical	3	66	junction_6	13.1601671721905	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAACAGCATTGCTCCTC	5838	False	NA	NA	False	ATTAAA	-5	NA	28075467	28119004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28075769_28095636_28095800_28095897_28095937_28096295_28096388_28098197_28098388_28098624_28098766_28099108_28099280_28100402_28100590_28102994_28103082_28103407_28103579_28103886_28104027_28104380_28104523_28104874_28105069_28105236_28106667_28108973_28109171_28112114_28112267_28112352_28112504_28113520_28113784_28114243_28114353_28114433_28114535_28114855
ENSMUSG00000039512.13_24	chr17	+	5733	8	ISM	ENSMUSG00000039512.13	ENSMUST00000114849.3	8634	21	30644	8	-3020	-8	3prime_fragment	FALSE	canonical	3	83	junction_2	9.05087660654695	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGCATTGCTCCTCGTG	8041	False	NA	NA	False	ATTAAA	-8	NA	28106058	28119007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28106667_28108973_28109171_28112114_28112267_28112352_28112504_28113520_28113784_28114243_28114353_28114433_28114535_28114855
ENSMUSG00000039512.13_30	chr17	+	4507	4	ISM	ENSMUSG00000039512.13	ENSMUST00000233409.2	594	5	-30	-2810	-30	-8	intron_retention	FALSE	canonical	3	89	junction_1	8.48528137423857	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGCATTGCTCCTCGTG	NA	False	NA	NA	False	ATTAAA	-8	NA	28113638	28119007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28113784_28114243_28114353_28114433_28114535_28114855
ENSMUSG00000039512.13_33	chr17	+	2382	1	ISM	ENSMUSG00000039512.13	ENSMUST00000114849.3	8634	21	41211	8	2957	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGCATTGCTCCTCGTG	NA	False	NA	NA	False	ATTAAA	-8	NA	28116625	28119007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28116600_28119000
ENSMUSG00000039515.12_33	chr2	+	942	1	ISM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	30824	1	1147	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGTGTGAGACATCTT	NA	False	NA	16	True	ATTAAA	-19	NA	30336874	30337816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30336900_30337800
ENSMUSG00000039515.12_4	chr2	+	2548	10	FSM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	37	1	37	0	multi-exon	TRUE	canonical	3	440	junction_4	51.3501655905104	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGTGTGAGACATCTT	NA	False	NA	16	True	ATTAAA	-19	NA	30306087	30337816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328366_30329675_30329777_30333301_30333410_30336388
ENSMUSG00000039518.8_11	chr17	+	2434	2	FSM	ENSMUSG00000039518.8	ENSMUST00000044804.8	2678	2	-23	267	-23	-267	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTATTTGCCTTCTTGGG	1640	False	NA	4	True	AATAAA	-18	NA	35863001	35867810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35863183_35865557
ENSMUSG00000039518.8_2	chr17	+	1885	1	ISM	ENSMUSG00000039518.8	ENSMUST00000044804.8	2678	2	2899	269	2899	-269	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGACTATTTGCCTTCTTG	108	False	NA	2	True	AATAAA	-16	NA	35865923	35867808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35865900_35867800
ENSMUSG00000039518.8_3	chr17	+	1867	2	NNC	ENSMUSG00000039518.8	novel	2678	2	NA	NA	2876	-267	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTATTTGCCTTCTTGGG	85	False	NA	4	True	AATAAA	-18	NA	35865900	35867810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_35865951_35865993
ENSMUSG00000039518.8_5	chr17	+	2355	2	NNC	ENSMUSG00000039518.8	novel	2678	2	NA	NA	-9056	-269	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGACTATTTGCCTTCTTG	6770	False	NA	2	True	AATAAA	-16	NA	35853968	35867808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_35854073_35865557
ENSMUSG00000039519.7_0	chr3	-	1945	6	FSM	ENSMUSG00000039519.7	ENSMUST00000035625.7	2166	6	23	198	23	-198	multi-exon	FALSE	canonical	2	3	junction_2	6.79411510058521	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTACTGAAATCCTCTAA	NA	False	NA	NA	False	AATAAA	-24	NA	18297479	18126311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_18126918_18133468_18133645_18150686_18150894_18151367_18151959_18157864_18158002_18297251
ENSMUSG00000039519.7_1	chr3	-	1664	5	NIC	ENSMUSG00000039519.7	novel	2166	6	NA	NA	-1	-327	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	6.28490254498827	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATGTCATGGCAATCA	NA	False	NA	NA	False	AATAAA	-16	NA	18297503	18126440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_18126918_18150686_18150894_18151367_18151959_18157864_18158002_18297251
ENSMUSG00000039519.7_3	chr3	-	3892	4	ISM	ENSMUSG00000039519.7	ENSMUST00000035625.7	2166	6	-15	21882	-15	-21882	5prime_fragment	FALSE	canonical	2	12	junction_3	4.08248290463863	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTAGATTTTTGTCTTA	NA	False	NA	NA	False	AATAAA	-35	NA	18297517	18147995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_18150894_18151367_18151959_18157864_18158002_18297251
ENSMUSG00000039523.17_0	chr4	+	4699	22	FSM	ENSMUSG00000039523.17	ENSMUST00000047497.15	5151	22	12	440	12	-440	multi-exon	FALSE	canonical	3	70	junction_14	10.5677814386534	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGAATCCTTCGTTTT	NA	False	NA	NA	False	NA	NA	NA	154059662	154092749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231_154074406_154077274_154077452_154077926_154078140_154078861_154078970_154079891_154079929_154080728_154080796_154081317_154081427_154086721_154086861_154086984_154087053_154090622_154090714_154091146
ENSMUSG00000039523.17_1	chr4	+	4670	22	NNC	ENSMUSG00000039523.17	novel	5151	22	NA	NA	19	-456	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_14	19.8388061962538	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTAAAACAGTACAAAA	NA	False	NA	NA	False	NA	NA	NA	154059669	154092733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231_154074406_154077274_154077452_154077926_154078134_154078861_154078970_154079891_154079929_154080728_154080796_154081317_154081427_154086721_154086861_154086984_154087053_154090622_154090714_154091146
ENSMUSG00000039523.17_20	chr4	+	4090	16	ISM	ENSMUSG00000039523.17	ENSMUST00000047497.15	5151	22	9736	12	-3537	-12	3prime_fragment	FALSE	canonical	3	70	junction_8	11.0843232640618	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGCGTTCAGTGTCATG	NA	False	NA	1	True	AATACA	-3	NA	154069386	154093177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231_154074406_154077274_154077452_154077926_154078140_154078861_154078970_154079891_154079929_154080728_154080796_154081317_154081427_154086721_154086861_154086984_154087053_154090622_154090714_154091146
ENSMUSG00000039523.17_8	chr4	+	2626	12	ISM	ENSMUSG00000039523.17	ENSMUST00000047497.15	5151	22	11	18246	11	410	5prime_fragment	FALSE	canonical	3	75	junction_10	10.7963875194935	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAAAAAAAAAAATTCCA	NA	False	NA	NA	False	NA	NA	NA	154059661	154074943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231
ENSMUSG00000039531.9_1	chr10	-	2132	11	FSM	ENSMUSG00000039531.9	ENSMUST00000218055.2	2180	11	47	1	0	-1	multi-exon	FALSE	canonical	3	35	junction_10	16.213882940246	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTGGTTTCTTGTCTA	NA	False	NA	-2	True	AATAAA	-19	NA	33827208	33795138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
ENSMUSG00000039531.9_14	chr10	-	1982	10	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	5	2	combination_of_known_splicesites	FALSE	canonical	1	3	junction_9	24.3300352914654	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGGTTTTGGTTTCTTGT	NA	False	NA	-5	True	AATAAA	-16	NA	33827250	33795141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33827198
ENSMUSG00000039531.9_20	chr10	-	2482	1	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	5871	146	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGCCAAAAAAAAAAAAAAA	6107	False	NA	NA	False	NA	NA	NA	33803465	33800983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_33801000_33803500
ENSMUSG00000039531.9_3	chr10	-	2073	11	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	2	5	junction_10	23.419863364247	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTGGTTTCTTGTCTA	NA	False	NA	-2	True	AATAAA	-19	NA	33827221	33795138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827198
ENSMUSG00000039531.9_31	chr10	-	4310	10	FSM	ENSMUSG00000039531.9	ENSMUST00000048222.6	2991	10	12	-1331	2	146	multi-exon	FALSE	canonical	3	35	junction_9	17.0301113137297	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33827206	33800983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
ENSMUSG00000039533.9_0	chr5	-	2174	7	FSM	ENSMUSG00000039533.9	ENSMUST00000037048.9	3317	7	22	1121	22	-1121	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAGCCAGTGAGCTTTAA	NA	False	NA	4	True	ATTAAA	-26	NA	142594533	142549233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_142550697_142553619_142553690_142555220_142555323_142560551_142560627_142560940_142561102_142565935_142566018_142594312
ENSMUSG00000039536.17_2	chr2	-	2828	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109238.9	2976	12	19	129	19	-3	multi-exon	FALSE	canonical	3	75	junction_8	58.6274129884562	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTTTTTTGTTAATTT	NA	False	NA	NA	False	AATAAA	-10	NA	166838166	166790195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
ENSMUSG00000039536.17_4	chr2	-	2809	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109235.8	3569	12	33	727	20	-3	multi-exon	FALSE	canonical	3	104	junction_8	51.6000192196774	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTTTTTTGTTAATTT	NA	False	NA	NA	False	AATAAA	-10	NA	166838165	166790195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
ENSMUSG00000039542.17_1	chr9	-	2040	1	ISM	ENSMUSG00000039542.17	ENSMUST00000193547.6	6050	18	294734	16	38839	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAAAAGCAACT	NA	False	NA	-17	True	AATAAA	-6	NA	49415491	49413451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_49413500_49415500
ENSMUSG00000039542.17_25	chr9	-	4535	18	NNC	ENSMUSG00000039542.17	novel	6050	18	NA	NA	-1	1396	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	53.9486491712707	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATAGTTTGGTTGTGGAA	8519	False	NA	-35	True	AATAAA	-6	NA	49710223	49414951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_49416864_49419888_49420006_49421004_49421213_49431334_49431513_49434821_49434947_49454310_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125_49481204_49709977
ENSMUSG00000039542.17_26	chr9	-	4542	18	NNC	ENSMUSG00000039542.17	novel	3088	18	NA	NA	0	1401	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	57.4653197657382	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGGTTGTGGAAGGTAT	8520	False	NA	-30	True	AATAAA	-11	NA	49710222	49414946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_49416864_49419888_49420006_49421004_49421213_49431334_49431516_49434821_49434947_49454310_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125_49481204_49709977
ENSMUSG00000039542.17_51	chr9	-	2695	14	NNC	ENSMUSG00000039542.17	novel	2525	14	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	54.642355204077	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACGGTGACGAAATAATT	8519	False	NA	NA	False	AATAAA	-21	NA	49710223	49442576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_49443277_49454310_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125_49481204_49709977
ENSMUSG00000039552.15_0	chr10	+	3499	6	FSM	ENSMUSG00000039552.15	ENSMUST00000169670.8	3650	6	9	142	9	-142	multi-exon	FALSE	canonical	1	2	junction_2	1.93907194296653	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAAATGTTTAGAGTTTT	NA	False	NA	3	True	AATAAA	-13	NA	33781115	33791875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_33781835_33784062_33784298_33785008_33785747_33787501_33787647_33788957_33789076_33790331
ENSMUSG00000039556.17_1	chrX	-	3085	4	FSM	ENSMUSG00000039556.17	ENSMUST00000115742.9	3066	4	-20	1	15	-1	multi-exon	FALSE	canonical	2	7	junction_3	1.4142135623731	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGTCTGGGAGCCTG	NA	False	NA	NA	False	AATATA	-20	NA	7440507	7425191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7427123_7430100_7430181_7430474_7430528_7439486
ENSMUSG00000039568.7_1	chr16	-	1359	3	FSM	ENSMUSG00000039568.7	ENSMUST00000037843.7	1851	3	484	8	-26	2	multi-exon	FALSE	canonical	3	334	junction_1	8.5	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCAGGCTCTGTAGTCT	143	False	NA	-9	True	NA	NA	NA	4697695	4692649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4693734_4694225_4694286_4697480
ENSMUSG00000039568.7_2	chr16	-	1073	4	NNC	ENSMUSG00000039568.7	novel	1851	3	NA	NA	-12	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.605142932464	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCACCAGGCTCTGTAG	157	False	NA	-12	True	NA	NA	NA	4697681	4692652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_4692968_4693236_4693734_4694225_4694286_4697480
ENSMUSG00000039568.7_5	chr16	-	748	1	ISM	ENSMUSG00000039568.7	ENSMUST00000037843.7	1851	3	4782	8	4272	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCAGGCTCTGTAGTCT	4441	False	NA	-9	True	NA	NA	NA	4693397	4692649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_4692600_4693400
ENSMUSG00000039577.18_0	chr4	+	4921	30	NNC	ENSMUSG00000039577.18	novel	4583	29	NA	NA	-416	-2	at_least_one_novel_splicesite	TRUE	canonical	3	19	junction_14	7.38929392329869	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGTGTCTCTTCTGATGTT	NA	False	NA	NA	False	AATGAA	-17	NA	152562182	152647638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_152562377_152568816_152568998_152573198_152573352_152581105_152581279_152582633_152582699_152583388_152583545_152587330_152587462_152590817_152591000_152591813_152591941_152602549_152602733_152608698_152608826_152620366_152620429_152621639_152621757_152622231_152622381_152622476_152622669_152623279_152623468_152628755_152628917_152631402_152631584_152636260_152636387_152638978_152639185_152639929_152640157_152640675_152640863_152641448_152641533_152643784_152643942_152644134_152644221_152644720_152644807_152645634_152645807_152646030_152646211_152646462_152646607_152647094
ENSMUSG00000039577.18_12	chr4	+	4972	30	FSM	ENSMUSG00000039577.18	ENSMUST00000081393.10	5027	30	42	13	6	-13	multi-exon	FALSE	canonical	0	0	junction_1	9.48470199522204	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTCTGCCGTAGTGTCT	NA	False	NA	NA	False	AATGAA	-6	NA	152562640	152647627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152562897_152568816_152568998_152573198_152573352_152581105_152581279_152582633_152582699_152583388_152583545_152587330_152587462_152590817_152591000_152591813_152591941_152602549_152602733_152608698_152608826_152620366_152620429_152621639_152621757_152622231_152622381_152622476_152622669_152623279_152623468_152628755_152628917_152631402_152631584_152636260_152636387_152638978_152639185_152639929_152640157_152640675_152640863_152641448_152641533_152643784_152643942_152644134_152644221_152644720_152644807_152645634_152645807_152646030_152646211_152646462_152646607_152647094
ENSMUSG00000039577.18_15	chr4	+	2886	16	ISM	ENSMUSG00000039577.18	ENSMUST00000056567.6	4583	29	53684	-133	35140	-3	3prime_fragment	FALSE	canonical	3	20	junction_5	8.52968672083304	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTAGTGTCTCTTCTGATGT	NA	False	NA	NA	False	AATGAA	-16	NA	152622510	152647637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152622669_152623279_152623468_152628755_152628917_152631402_152631584_152636260_152636387_152638978_152639185_152639929_152640157_152640675_152640863_152641448_152641533_152643784_152643942_152644134_152644221_152644720_152644807_152645634_152645807_152646030_152646211_152646462_152646607_152647094
ENSMUSG00000039577.18_16	chr4	+	2019	12	ISM	ENSMUSG00000039577.18	ENSMUST00000056567.6	4583	29	67480	0	48936	0	3prime_fragment	FALSE	canonical	3	20	junction_1	9.01330513305123	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATTATGTTTTTCTTA	NA	False	NA	NA	False	TATAAA	-13	NA	152636306	152647504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152636387_152638978_152639185_152639929_152640157_152640675_152640863_152641448_152641533_152643784_152643942_152644134_152644221_152644720_152644807_152645634_152645807_152646030_152646211_152646462_152646607_152647094
ENSMUSG00000039577.18_18	chr4	+	1367	7	ISM	ENSMUSG00000039577.18	ENSMUST00000056567.6	4583	29	74959	-133	56415	-3	3prime_fragment	FALSE	canonical	3	30	junction_3	7.02376916856849	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTAGTGTCTCTTCTGATGT	NA	False	NA	NA	False	AATGAA	-16	NA	152643785	152647637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152643942_152644134_152644221_152644720_152644807_152645634_152645807_152646030_152646211_152646462_152646607_152647094
ENSMUSG00000039577.18_2	chr4	+	4949	30	NNC	ENSMUSG00000039577.18	novel	4583	29	NA	NA	-407	-1	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_6	8.66361725675035	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTCTCTTCTGATGTTT	NA	False	NA	NA	False	AATGAA	-18	NA	152562191	152647639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_152562377_152568816_152568998_152573198_152573352_152581105_152581279_152582633_152582699_152583388_152583581_152587330_152587462_152590817_152591000_152591813_152591941_152602549_152602733_152608698_152608826_152620366_152620429_152621639_152621757_152622231_152622381_152622476_152622669_152623279_152623468_152628755_152628917_152631402_152631584_152636260_152636387_152638978_152639185_152639929_152640157_152640675_152640863_152641448_152641533_152643784_152643942_152644134_152644221_152644720_152644807_152645634_152645807_152646030_152646211_152646462_152646607_152647094
ENSMUSG00000039577.18_20	chr4	+	1046	1	NIC	ENSMUSG00000039577.18	novel	5027	30	NA	NA	59222	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGTGTCTCTTCTGATGTT	NA	False	NA	NA	False	AATGAA	-17	NA	152646592	152647638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_152646600_152647600
ENSMUSG00000039578.18_0	chr6	+	3772	10	NIC	ENSMUSG00000039578.18	novel	5657	11	NA	NA	-177	-11	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATTTACACATGATCAT	NA	False	NA	NA	False	AATAAA	-12	NA	61157130	61797555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_61157638_61287797_61289157_61290637_61290820_61350944_61351039_61399940_61400062_61547653_61547862_61615422_61615498_61695128_61695213_61787614_61787693_61796491
ENSMUSG00000039585.16_11	chr9	+	9610	42	NIC	ENSMUSG00000039585.16	novel	12198	43	NA	NA	71	-2460	combination_of_known_splicesites	FALSE	canonical	3	26	junction_5	13.425716043437	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGCACTGTTACAAGAAG	626	False	NA	NA	False	AATACA	-16	NA	59658249	59833689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_59658629_59686825_59687737_59690753_59690849_59694096_59694160_59695697_59695798_59709196_59709295_59711167_59711295_59716681_59716772_59719184_59719302_59722526_59722662_59728867_59728990_59731473_59731616_59734405_59734602_59739471_59739592_59750345_59750422_59762648_59762796_59764089_59764130_59767362_59767486_59768707_59768789_59771198_59771310_59772849_59772973_59775393_59775544_59776756_59777077_59777718_59779315_59781884_59781967_59782484_59782698_59791762_59791876_59796695_59796839_59801423_59801648_59802043_59802161_59802475_59802665_59803772_59803821_59807632_59807745_59810189_59810252_59813174_59813368_59814630_59814760_59815476_59815583_59817098_59817231_59817866_59817991_59829005_59829209_59830903_59831026_59831853
ENSMUSG00000039585.16_16	chr9	+	10239	42	FSM	ENSMUSG00000039585.16	ENSMUST00000128341.2	11985	42	78	1668	78	-1668	multi-exon	FALSE	canonical	1	4	junction_26	16.0855091618831	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTGTGGATTTTTTAAT	633	False	NA	NA	False	AATAAA	-31	NA	59658256	59834481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_59658629_59686825_59687737_59690753_59690849_59694096_59694160_59695697_59695798_59697318_59697376_59709196_59709295_59711167_59711295_59716681_59716772_59719184_59719302_59722526_59722662_59728867_59728990_59731473_59731616_59734405_59734602_59739471_59739592_59750345_59750422_59762648_59762796_59764089_59764130_59767362_59767486_59768707_59768789_59771198_59771310_59772849_59772973_59775393_59775544_59776756_59777077_59777718_59779315_59781884_59781967_59791762_59791876_59796695_59796839_59801423_59801648_59802043_59802161_59802475_59802665_59803772_59803821_59807632_59807745_59810189_59810252_59813174_59813368_59814630_59814760_59815476_59815583_59817098_59817231_59817866_59817991_59829005_59829209_59830903_59831026_59831853
ENSMUSG00000039585.16_37	chr9	+	6116	19	ISM	ENSMUSG00000039585.16	ENSMUST00000135298.8	12198	43	119959	1669	-916	-1669	3prime_fragment	FALSE	canonical	3	42	junction_5	12.1392384897534	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATTTGTGGATTTTTTAA	NA	False	NA	NA	False	AATAAA	-30	NA	59778137	59834480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_59779315_59781884_59781967_59782484_59782698_59791762_59791876_59796695_59796839_59801423_59801648_59802043_59802161_59802475_59802665_59803772_59803821_59807632_59807745_59810189_59810252_59813174_59813368_59814630_59814760_59815476_59815583_59817098_59817231_59817866_59817991_59829005_59829209_59830903_59831026_59831853
ENSMUSG00000039585.16_42	chr9	+	3599	8	ISM	ENSMUSG00000039585.16	ENSMUST00000135298.8	12198	43	155027	1675	83	-1675	3prime_fragment	FALSE	canonical	3	44	junction_6	9.29559913428425	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCTAGATTTGTGGATT	NA	False	NA	NA	False	AATAAA	-24	NA	59813205	59834474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_59813368_59814630_59814760_59815476_59815583_59817098_59817231_59817866_59817991_59829005_59829209_59830903_59831026_59831853
ENSMUSG00000039585.16_44	chr9	+	4743	4	ISM	ENSMUSG00000039585.16	ENSMUST00000135298.8	12198	43	159688	2	686	-2	3prime_fragment	FALSE	canonical	3	44	junction_2	6.64997911442	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATGTGTGGTTTGTTTTC	NA	False	NA	10	True	ATTAAA	-22	NA	59817866	59836147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_59817991_59829005_59829209_59830903_59831026_59831853
ENSMUSG00000039585.16_46	chr9	+	4548	3	ISM	ENSMUSG00000039585.16	ENSMUST00000136740.8	12252	44	170871	29	11869	-29	3prime_fragment	FALSE	canonical	3	44	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAGAACAAAGCTTCCA	NA	False	NA	-17	True	NA	NA	NA	59829049	59836120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_59829209_59830903_59831026_59831853
ENSMUSG00000039585.16_48	chr9	+	3425	1	ISM	ENSMUSG00000039585.16	ENSMUST00000136740.8	12252	44	174535	11	15533	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAGTGCAATATGTGTGG	NA	False	NA	1	True	ATTAAA	-13	NA	59832713	59836138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_59832700_59836100
ENSMUSG00000039585.16_5	chr9	+	10461	43	FSM	ENSMUSG00000039585.16	ENSMUST00000135298.8	12198	43	60	1677	60	-1677	multi-exon	TRUE	canonical	3	21	junction_5	14.12370436335	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCTAGATTTGTGGA	615	False	NA	NA	False	AATAAA	-22	NA	59658238	59834472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_59658629_59686825_59687737_59690753_59690849_59694096_59694160_59695697_59695798_59697318_59697376_59709196_59709295_59711167_59711295_59716681_59716772_59719184_59719302_59722526_59722662_59728867_59728990_59731473_59731616_59734405_59734602_59739471_59739592_59750345_59750422_59762648_59762796_59764089_59764130_59767362_59767486_59768707_59768789_59771198_59771310_59772849_59772973_59775393_59775544_59776756_59777077_59777718_59779315_59781884_59781967_59782484_59782698_59791762_59791876_59796695_59796839_59801423_59801648_59802043_59802161_59802475_59802665_59803772_59803821_59807632_59807745_59810189_59810252_59813174_59813368_59814630_59814760_59815476_59815583_59817098_59817231_59817866_59817991_59829005_59829209_59830903_59831026_59831853
ENSMUSG00000039585.16_61	chr9	+	3718	10	ISM	ENSMUSG00000039585.16	ENSMUST00000135298.8	12198	43	149538	1677	3910	-1677	3prime_fragment	FALSE	canonical	3	44	junction_8	13.4998856876733	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCTAGATTTGTGGA	NA	False	NA	NA	False	AATAAA	-22	NA	59807716	59834472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_59807745_59810189_59810252_59813174_59813368_59814630_59814760_59815476_59815583_59817098_59817231_59817866_59817991_59829005_59829209_59830903_59831026_59831853
ENSMUSG00000039599.17_1	chr14	+	2384	14	FSM	ENSMUSG00000039599.17	ENSMUST00000090499.13	2370	14	-20	6	12	-4	multi-exon	FALSE	canonical	3	48	junction_9	83.3254828649349	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAAGTTCTTTATTACAT	NA	False	NA	5	True	AATAAA	-14	NA	20398269	20433553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577_20425682_20427842_20428068_20428467_20428592_20428831_20428952_20431816_20431890_20432984
ENSMUSG00000039599.17_11	chr14	+	2688	6	FSM	ENSMUSG00000039599.17	ENSMUST00000224930.2	2716	6	23	5	1	-5	multi-exon	FALSE	canonical	3	59	junction_5	79.7004391455907	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACAGCACCAGTTAAATG	NA	False	NA	2	True	NA	NA	NA	20398252	20415307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330
ENSMUSG00000039599.17_13	chr14	+	2835	7	ISM	ENSMUSG00000039599.17	ENSMUST00000224721.2	4483	8	-61	6104	9	-6	5prime_fragment	FALSE	canonical	3	175	junction_5	36.4771618047969	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGACAGCACCAGTTAAAT	NA	False	NA	1	True	NA	NA	NA	20398266	20415306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330
ENSMUSG00000039599.17_14	chr14	+	1761	8	FSM	ENSMUSG00000039599.17	ENSMUST00000224721.2	4483	8	-61	2783	9	492	multi-exon	FALSE	canonical	3	134	junction_7	47.5106862308097	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAGTCTGAATATGTTCT	NA	False	NA	9	True	NA	NA	NA	20398266	20418627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20417913
ENSMUSG00000039599.17_16	chr14	+	2228	13	NIC	ENSMUSG00000039599.17	novel	2370	14	NA	NA	3	-7	combination_of_known_junctions	FALSE	canonical	3	48	junction_8	86.9643924578074	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTTAAGTTCTTTATTA	NA	False	NA	2	True	AATAAA	-11	NA	20398260	20433550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20424397_20424523_20425577_20425682_20427842_20428068_20428467_20428592_20428831_20428952_20431816_20431890_20432984
ENSMUSG00000039599.17_2	chr14	+	1909	8	ISM	ENSMUSG00000039599.17	ENSMUST00000051915.7	1981	12	-30	7088	2	114	5prime_fragment	FALSE	canonical	3	59	junction_5	87.5522001728229	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGGTACTTGTCCATGT	NA	False	NA	NA	False	AATAAA	-21	NA	20398259	20426469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20424397_20424523_20425577
ENSMUSG00000039599.17_4	chr14	+	1597	7	NIC	ENSMUSG00000039599.17	novel	4483	8	NA	NA	12	493	combination_of_known_junctions	FALSE	canonical	3	59	junction_5	78.3207436691512	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGTCTGAATATGTTCTT	NA	False	NA	10	True	NA	NA	NA	20398269	20418628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20417913
ENSMUSG00000039599.17_9	chr14	+	2070	9	ISM	ENSMUSG00000039599.17	ENSMUST00000225942.2	2151	14	-31	6877	1	112	5prime_fragment	FALSE	canonical	3	87	junction_7	68.9373583407429	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACATTGGTACTTGTCCAT	NA	False	NA	NA	False	AATAAA	-19	NA	20398258	20426467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577
ENSMUSG00000039601.17_1	chr17	+	3354	5	FSM	ENSMUSG00000039601.17	ENSMUST00000229744.2	2914	5	10	-450	10	-2	multi-exon	FALSE	canonical	2	8	junction_1	4.9180788932265	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCTGTGTGGCATCATT	4903	False	NA	3	True	AATATA	-12	NA	44112744	44350401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_44112988_44147161_44147389_44328657_44328832_44331843_44332016_44347863
ENSMUSG00000039611.3_0	chr4	-	1998	2	FSM	ENSMUSG00000039611.3	ENSMUST00000042750.3	2989	2	70	921	70	-921	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTGTTCTGTGTCAGTT	1	True	NA	-7	True	AATAAA	-7	NA	49597806	49585426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_49587242_49597623
ENSMUSG00000039611.3_3	chr4	-	1481	1	ISM	ENSMUSG00000039611.3	ENSMUST00000042750.3	2989	2	10975	915	6989	-915	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTGTCAGTTGTCTTG	6994	False	NA	-1	True	AATAAA	-13	NA	49586901	49585420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_49585400_49586900
ENSMUSG00000039615.10_0	chr17	-	1237	7	FSM	ENSMUSG00000039615.10	ENSMUST00000044911.10	1803	7	433	133	-9	-2	multi-exon	FALSE	canonical	3	1378	junction_3	85.5336191213724	948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGGCATGTGCTGGTG	6778	False	NA	-21	True	AATAAA	-13	NA	26051902	26049611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUSG00000039615.10_3	chr17	-	1416	6	FSM	ENSMUSG00000039615.10	ENSMUST00000236565.2	1408	6	-9	1	-9	-1	multi-exon	FALSE	canonical	3	1486	junction_1	49.0167318372002	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGGCATGTGCTGGTGC	6778	False	NA	-20	True	AATAAA	-14	NA	26051902	26049610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUSG00000039616.11_0	chr18	+	2730	15	FSM	ENSMUSG00000039616.11	ENSMUST00000068006.9	2903	15	169	4	-18	-4	multi-exon	FALSE	canonical	2	8	junction_8	5.18878303533257	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACACTGCCTGCCATTAT	NA	False	NA	11	True	ATTAAA	-11	NA	24786916	24834628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_24787125_24793046_24793137_24797073_24797141_24799066_24799709_24803621_24803699_24807287_24807488_24809616_24809734_24812442_24812869_24816185_24816349_24819683_24819763_24821994_24822120_24825574_24825681_24828930_24829070_24832909_24833015_24834442
ENSMUSG00000039617.9_0	chr3	+	1034	1	FSM	ENSMUSG00000039617.9	ENSMUST00000117148.2	684	1	-93	-257	-93	257	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAACTCTGAAAAGTCTT	NA	False	NA	NA	False	ATTAAA	-41	NA	21103635	21104669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_21103600_21104700
ENSMUSG00000039620.18_0	chr8	+	2454	6	NIC	ENSMUSG00000039620.18	novel	2573	7	NA	NA	56	-6	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	1.6	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAATTACTTAGACCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	36924783	36980161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_36925046_36925311_36925538_36956197_36956400_36965480_36965636_36972705_36972880_36978726
ENSMUSG00000039620.18_2	chr8	+	1943	1	NIC	ENSMUSG00000039620.18	novel	5820	6	NA	NA	5576	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAATTACTTAGACCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	36978218	36980161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_36978200_36980200
ENSMUSG00000039621.14_1	chr2	-	6493	40	FSM	ENSMUSG00000039621.14	ENSMUST00000036719.12	6533	40	30	10	-11	-10	multi-exon	FALSE	canonical	3	38	junction_37	7.40390997863488	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATACAAATAAGGTGTGG	NA	False	NA	NA	False	ATTAAA	-38	NA	166555722	166408271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_166409771_166410971_166411040_166411265_166411369_166412254_166412428_166413449_166413517_166414858_166414974_166415074_166415219_166416040_166416141_166417465_166417687_166418583_166418626_166419797_166419927_166422136_166422228_166422336_166422420_166423826_166423916_166425029_166425243_166426951_166427226_166427652_166427864_166428442_166428605_166428966_166429155_166430873_166430980_166431429_166431567_166432353_166432440_166434120_166434270_166434715_166434809_166435679_166435823_166438205_166438279_166441525_166441602_166443446_166443497_166443643_166443748_166444735_166444837_166451657_166451806_166453547_166453698_166455061_166455181_166459752_166459887_166463091_166463254_166475285_166475388_166480234_166480340_166486668_166486792_166488893_166488966_166555434
ENSMUSG00000039621.14_11	chr2	-	3502	17	ISM	ENSMUSG00000039621.14	ENSMUST00000099080.9	5818	38	53145	-608	-3752	-10	3prime_fragment	FALSE	canonical	3	44	junction_9	7.13157591279796	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATACAAATAAGGTGTGG	NA	False	NA	NA	False	ATTAAA	-38	NA	166427743	166408271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166409771_166410971_166411040_166411265_166411369_166412254_166412428_166413449_166413517_166414858_166414974_166415074_166415219_166416040_166416141_166417465_166417687_166418583_166418626_166419797_166419927_166422136_166422228_166422336_166422420_166423826_166423916_166425029_166425243_166426951_166427226_166427652
ENSMUSG00000039621.14_13	chr2	-	2987	15	ISM	ENSMUSG00000039621.14	ENSMUST00000099080.9	5818	38	55794	-606	-1103	-12	3prime_fragment	FALSE	canonical	3	44	junction_9	7.19587466850959	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAATACAAATAAGGTGT	NA	False	NA	NA	False	ATTAAA	-36	NA	166425094	166408273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166409771_166410971_166411040_166411265_166411369_166412254_166412428_166413449_166413517_166414858_166414974_166415074_166415219_166416040_166416141_166417465_166417687_166418583_166418626_166419797_166419927_166422136_166422228_166422336_166422420_166423826_166423916_166425029
ENSMUSG00000039621.14_2	chr2	-	3315	16	ISM	ENSMUSG00000039621.14	ENSMUST00000099080.9	5818	38	53762	-611	-3135	-7	3prime_fragment	FALSE	canonical	3	44	junction_9	7.05974503788912	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAATAAGGTGTGGCCT	NA	False	NA	NA	False	ATTAAA	-41	NA	166427126	166408268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166409771_166410971_166411040_166411265_166411369_166412254_166412428_166413449_166413517_166414858_166414974_166415074_166415219_166416040_166416141_166417465_166417687_166418583_166418626_166419797_166419927_166422136_166422228_166422336_166422420_166423826_166423916_166425029_166425243_166426951
ENSMUSG00000039621.14_21	chr2	-	3920	19	ISM	ENSMUSG00000039621.14	ENSMUST00000099080.9	5818	38	51778	-600	-5119	-18	3prime_fragment	FALSE	canonical	3	44	junction_9	7.1336448530109	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCGGTATATAATACAAATA	NA	False	NA	NA	False	ATTAAA	-30	NA	166429110	166408279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166409771_166410971_166411040_166411265_166411369_166412254_166412428_166413449_166413517_166414858_166414974_166415074_166415219_166416040_166416141_166417465_166417687_166418583_166418626_166419797_166419927_166422136_166422228_166422336_166422420_166423826_166423916_166425029_166425243_166426951_166427226_166427652_166427864_166428442_166428605_166428966
ENSMUSG00000039621.14_5	chr2	-	1381	1	ISM	ENSMUSG00000039621.14	ENSMUST00000036719.12	6533	40	146102	8	5247	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACAAATAAGGTGTGGCC	NA	False	NA	NA	False	ATTAAA	-40	NA	166409650	166408269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166408300_166409600
ENSMUSG00000039621.14_6	chr2	-	1810	4	ISM	ENSMUSG00000039621.14	ENSMUST00000109246.2	2386	14	11602	-619	2508	-5	3prime_fragment	FALSE	canonical	3	54	junction_1	6.16441400296898	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATAAGGTGTGGCCTGC	NA	False	NA	NA	False	ATTAAA	-43	NA	166412389	166408266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166409771_166410971_166411040_166411265_166411369_166412254
ENSMUSG00000039623.14_10	chr5	+	3120	16	NIC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	-5	1	intron_retention	FALSE	canonical	3	53	junction_8	15.4324333790883	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTGGTGGCACATGCC	8685	False	NA	15	True	AATAAA	-20	NA	142449793	142463558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
ENSMUSG00000039623.14_3	chr5	+	2783	17	FSM	ENSMUSG00000039623.14	ENSMUST00000038699.13	3689	17	0	906	0	2	multi-exon	FALSE	canonical	3	53	junction_8	14.9769353924626	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTGGTGGCACATGCCT	8700	False	NA	16	True	AATAAA	-21	NA	142449808	142463559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
ENSMUSG00000039623.14_64	chr5	+	1855	9	NIC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	-3784	2	intron_retention	FALSE	canonical	3	64	junction_4	11.3026545554573	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTGGTGGCACATGCCT	2095	False	NA	16	True	AATAAA	-21	NA	142456069	142463559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
ENSMUSG00000039623.14_71	chr5	+	1643	1	NIC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	2966	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCATGAGGGCGCGGTGT	8845	False	NA	1	True	AATAAA	-11	NA	142462819	142464462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_142462800_142464500
ENSMUSG00000039628.10_0	chr17	+	1269	2	FSM	ENSMUSG00000039628.10	ENSMUST00000044922.8	1220	2	-50	1	-35	0	multi-exon	FALSE	canonical	3	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGACTTGAAGGTGTGG	NA	False	NA	NA	False	AATAAA	-21	NA	24971926	24977657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24972473_24976934
ENSMUSG00000039629.15_0	chr6	+	5358	21	FSM	ENSMUSG00000039629.15	ENSMUST00000046028.12	5370	21	2	10	2	-4	multi-exon	FALSE	canonical	3	5	junction_19	5.0386009963084	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAGAAATCTGGTCTTT	-3	True	NA	NA	False	AATAAA	-14	NA	29917013	29959670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29917230_29920460_29920531_29923913_29923989_29924964_29925103_29926555_29926677_29927319_29927389_29927585_29927693_29928433_29928562_29929778_29929983_29931118_29931355_29931762_29931829_29932201_29932266_29932988_29933061_29937579_29937655_29938460_29938559_29939035_29939163_29941837_29941939_29944424_29944492_29953347_29953453_29955430_29955636_29956656
ENSMUSG00000039629.15_8	chr6	+	3099	18	FSM	ENSMUSG00000039629.15	ENSMUST00000137068.6	3098	18	2	-3	2	3	multi-exon	FALSE	canonical	3	10	junction_1	4.07116622894077	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTGTTTGTTTTCTTTT	-3	True	NA	NA	False	TATAAA	-12	NA	29917013	29945556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29917230_29920460_29920531_29923913_29923989_29924964_29925103_29926555_29926677_29927319_29927389_29927585_29927693_29928433_29928562_29929778_29929983_29931118_29931355_29931762_29931829_29932201_29932266_29932988_29933061_29937579_29937655_29938460_29938559_29939035_29939163_29941837_29941939_29944424
ENSMUSG00000039630.11_41	chr1	-	3397	14	FSM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	14	4229	14	3294	multi-exon	FALSE	canonical	2	3444	junction_4	860.763298254115	10550	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCCAGTTGTCTAATGG	NA	False	NA	-9	True	ATTAAA	-12	NA	178165348	178156136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
ENSMUSG00000039632.14_0	chr9	-	1904	13	FSM	ENSMUSG00000039632.14	ENSMUST00000044926.6	2197	13	286	7	189	-7	multi-exon	FALSE	canonical	1	2	junction_6	2.13924960883224	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACCCCCTGGGTATTCA	4490	False	NA	NA	False	AATAAA	-9	NA	21913644	21901173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21901541_21901692_21901778_21902097_21902254_21902903_21903061_21903143_21903305_21904167_21904321_21904833_21904957_21906108_21906235_21906322_21906425_21906503_21906675_21909181_21909260_21909340_21909463_21913541
ENSMUSG00000039633.8_0	chr8	-	3726	12	FSM	ENSMUSG00000039633.8	ENSMUST00000239119.2	3930	12	200	4	200	-4	multi-exon	FALSE	canonical	3	80	junction_8	13.2583982428852	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATACTCCCCCCCCCTTT	NA	False	NA	-6	True	AATAAA	-11	NA	36716470	36683221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_36684756_36686979_36687133_36689769_36689933_36690017_36690177_36692710_36692833_36696289_36696405_36697234_36697332_36697436_36697678_36698191_36698342_36701053_36701177_36703142_36703262_36715720
ENSMUSG00000039633.8_1	chr8	-	3575	11	NIC	ENSMUSG00000039633.8	novel	3930	12	NA	NA	201	-4	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	33.7971892322424	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATACTCCCCCCCCCTTT	NA	False	NA	-6	True	AATAAA	-11	NA	36716469	36683221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_36684756_36686979_36687133_36689769_36689933_36690017_36690177_36692710_36692833_36696289_36696405_36697234_36697332_36697436_36697678_36701053_36701177_36703142_36703262_36715720
ENSMUSG00000039634.13_0	chr4	+	2820	4	FSM	ENSMUSG00000039634.13	ENSMUST00000042964.13	2835	4	46	-31	5	31	multi-exon	FALSE	canonical	1	1	junction_1	22.553639765383	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAGCTGAGATGTTTTG	-34	True	NA	NA	False	AATAAA	-23	NA	49521221	49531548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_49521252_49521422_49521596_49522397_49522483_49529016
ENSMUSG00000039634.13_1	chr4	+	2926	3	FSM	ENSMUSG00000039634.13	ENSMUST00000107696.2	2965	3	53	-14	53	14	multi-exon	FALSE	canonical	3	41	junction_2	6.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCTAAAATGTATGCTAG	14	True	NA	NA	False	AATAAA	-6	NA	49521269	49531531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_49521596_49522397_49522483_49529016
ENSMUSG00000039637.16_2	chr16	-	3491	28	FSM	ENSMUSG00000039637.16	ENSMUST00000038552.13	4296	28	54	751	-10	493	multi-exon	TRUE	canonical	3	90	junction_15	10.2195380265448	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTGCTGCTCCAC	NA	False	NA	-1	True	ATTAAA	-16	NA	4497587	4444747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4445364_4445473_4445561_4446047_4446140_4446539_4446676_4446919_4447037_4448051_4448142_4448227_4448370_4449312_4449399_4449674_4449780_4449850_4449994_4450082_4450170_4450276_4450386_4451118_4451295_4451577_4451702_4452162_4452295_4452452_4452546_4452625_4452772_4452848_4452907_4453247_4453303_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
ENSMUSG00000039640.8_0	chr11	+	904	5	FSM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	48	364	48	244	multi-exon	FALSE	canonical	3	1076	junction_2	33.5186515241887	512	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTGGTGTGTGTGCCC	9003	False	NA	-28	True	AATATA	-21	NA	120375486	120379527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922_120379061_120379143
ENSMUSG00000039646.6_0	chr16	+	2809	2	FSM	ENSMUSG00000039646.6	ENSMUST00000038770.4	2829	2	-18	38	-18	-38	multi-exon	FALSE	canonical	2	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAATAAAAAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	4457786	4468628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4458013_4466045
ENSMUSG00000039648.15_0	chr2	-	1706	12	ISM	ENSMUSG00000039648.15	ENSMUST00000113661.10	2057	13	4199	-4	-48	-1	3prime_fragment	FALSE	canonical	3	127	junction_6	13.3880420309128	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCAGCTTCTCTCTTCC	9488	False	NA	-6	True	AATAAA	-22	NA	30084172	30075138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065
ENSMUSG00000039648.15_13	chr2	-	1937	14	NIC	ENSMUSG00000039648.15	novel	2026	14	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	49.6595510039827	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCAGCTTCTCTCTTC	NA	False	NA	-7	True	AATAAA	-21	NA	30095826	30075139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30082199_30082298_30084065_30084125_30095644
ENSMUSG00000039648.15_2	chr2	-	2042	14	FSM	ENSMUSG00000039648.15	ENSMUST00000113663.9	2026	14	-13	-3	2	-2	multi-exon	FALSE	canonical	3	14	junction_13	49.789616559678	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCAGCTTCTCTCTTC	NA	False	NA	-7	True	AATAAA	-21	NA	30095826	30075139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30087968_30088172_30095644
ENSMUSG00000039648.15_3	chr2	-	1926	12	NIC	ENSMUSG00000039648.15	novel	2038	13	NA	NA	-1	0	intron_retention	FALSE	canonical	3	91	junction_11	21.2688419140215	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCAGCTTCTCTCTTCCT	NA	False	NA	-5	True	AATAAA	-23	NA	30095814	30075137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30095644
ENSMUSG00000039648.15_4	chr2	-	1838	13	FSM	ENSMUSG00000039648.15	ENSMUST00000044038.10	1876	13	34	4	3	-2	multi-exon	FALSE	canonical	3	91	junction_12	20.7811011899434	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCAGCTTCTCTCTTC	NA	False	NA	-7	True	AATAAA	-21	NA	30095825	30075139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30095644
ENSMUSG00000039652.17_1	chr19	-	5791	10	NIC	ENSMUSG00000039652.17	novel	2411	10	NA	NA	4	-5	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	2.19988776369148	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAACGTGCGAGATCTC	9209	False	NA	-11	True	AATAAA	-12	NA	37184857	36998701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_37002488_37021921_37022104_37031659_37031775_37045572_37045692_37064937_37065028_37065819_37065988_37103731_37103789_37116530_37116622_37151366_37152386_37184693
ENSMUSG00000039652.17_2	chr19	-	4875	9	ISM	ENSMUSG00000039652.17	ENSMUST00000123727.8	2411	10	23875	-3337	-138	-5	3prime_fragment	TRUE	canonical	2	6	junction_7	1.71391365010026	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAACGTGCGAGATCTC	NA	False	NA	-11	True	AATAAA	-12	NA	37151633	36998701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_37002488_37021921_37022104_37031659_37031775_37045572_37045692_37064937_37065028_37065819_37065988_37103731_37103789_37116530_37116622_37151366
ENSMUSG00000039652.17_4	chr19	-	5822	10	NIC	ENSMUSG00000039652.17	novel	4224	11	NA	NA	35	-5	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	2.19988776369148	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAACGTGCGAGATCTC	9240	False	NA	-11	True	AATAAA	-12	NA	37184826	36998701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_37002488_37021921_37022104_37031659_37031775_37045572_37045692_37064937_37065028_37065819_37065988_37103731_37103789_37116530_37116622_37151366_37152386_37184631
ENSMUSG00000039652.17_6	chr19	-	2879	1	ISM	ENSMUSG00000039652.17	ENSMUST00000079754.11	5899	11	183281	11	149915	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAACGTGCGAGATCTC	NA	False	NA	-11	True	AATAAA	-12	NA	37001580	36998701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_36998700_37001600
ENSMUSG00000039656.18_2	chr17	+	2610	10	FSM	ENSMUSG00000039656.18	ENSMUST00000174299.9	2577	10	-39	6	1	0	multi-exon	FALSE	canonical	3	122	junction_7	37.5838157971825	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGCCATTTTCTGGAC	NA	False	NA	15	True	CATAAA	-15	NA	34250786	34257367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34251198_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255846_34255939_34256140_34256247_34256357
ENSMUSG00000039656.18_4	chr17	+	2324	10	FSM	ENSMUSG00000039656.18	ENSMUST00000116612.3	2283	10	-41	0	-41	0	multi-exon	FALSE	canonical	3	20	junction_1	64.8690989609074	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGCCATTTTCTGGAC	NA	False	NA	15	True	CATAAA	-15	NA	34251333	34257367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34251459_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255846_34255939_34256140_34256247_34256357
ENSMUSG00000039656.18_5	chr17	+	2625	10	FSM	ENSMUSG00000039656.18	ENSMUST00000044858.16	2627	10	-2	4	-2	0	multi-exon	FALSE	canonical	3	65	junction_7	51.2967642711639	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGCCATTTTCTGGAC	NA	False	NA	15	True	CATAAA	-15	NA	34250783	34257367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34251198_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255834_34255939_34256140_34256247_34256357
ENSMUSG00000039660.17_1	chr2	-	1799	12	FSM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	4	2	-4	0	multi-exon	FALSE	canonical	3	299	junction_5	38.9436974393538	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTCTAGACCCTG	NA	False	NA	-30	True	AATAAA	-13	NA	30068458	30063484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068401
ENSMUSG00000039660.17_3	chr2	-	1743	11	ISM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	484	2	-1	0	3prime_fragment	FALSE	canonical	3	299	junction_5	40.0311128998433	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTCTAGACCCTG	NA	False	NA	-30	True	AATAAA	-13	NA	30067978	30063484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931
ENSMUSG00000039660.17_6	chr2	-	1997	11	FSM	ENSMUSG00000039660.17	ENSMUST00000144093.8	2010	11	13	0	-4	0	multi-exon	FALSE	canonical	3	299	junction_5	40.8044115262063	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTCTAGACCCTG	NA	False	NA	-30	True	AATAAA	-13	NA	30068458	30063484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067978_30068401
ENSMUSG00000039662.17_0	chr4	+	4853	5	FSM	ENSMUSG00000039662.17	ENSMUST00000048892.14	4919	5	64	2	-13	-1	multi-exon	FALSE	canonical	3	97	junction_2	16.0370664399696	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGAGGAGTCCTGTATC	4599	False	NA	1	True	AATAAA	-16	NA	152381747	152391576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152382026_152383141_152383231_152384127_152384298_152384993_152385212_152387478
ENSMUSG00000039662.17_11	chr4	+	2937	1	ISM	ENSMUSG00000039662.17	ENSMUST00000048892.14	4919	5	6956	2	-1204	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGAGGAGTCCTGTATC	NA	False	NA	1	True	AATAAA	-16	NA	152388639	152391576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152388600_152391600
ENSMUSG00000039662.17_3	chr4	+	4959	6	FSM	ENSMUSG00000039662.17	ENSMUST00000151372.8	4950	6	-10	1	-10	-1	multi-exon	FALSE	canonical	3	25	junction_2	50.2274825170444	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGAGGAGTCCTGTATC	4602	False	NA	1	True	AATAAA	-16	NA	152381750	152391576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152382026_152383141_152383231_152383593_152383703_152384127_152384298_152384993_152385212_152387478
ENSMUSG00000039670.3_0	chr11	-	770	2	FSM	ENSMUSG00000039670.3	ENSMUST00000137632.2	372	2	-121	-277	11	-2	multi-exon	FALSE	canonical	2	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATGCAGGGGCTTTTGT	970	False	NA	-8	True	AATAAA	-16	NA	120348883	120347433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120347989_120348668
ENSMUSG00000039670.3_1	chr11	-	782	2	FSM	ENSMUSG00000039670.3	ENSMUST00000044007.3	813	2	28	3	28	-3	multi-exon	FALSE	canonical	3	42	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCATGCAGGGGCTTTTG	987	False	NA	-9	True	AATAAA	-15	NA	120348866	120347434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120347989_120348638
ENSMUSG00000039670.3_2	chr11	-	1432	1	NIC	ENSMUSG00000039670.3	novel	813	2	NA	NA	28	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCATGCAGGGGCTTTTG	987	False	NA	-9	True	AATAAA	-15	NA	120348866	120347434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120347400_120348900
ENSMUSG00000039671.19_0	chr2	-	4194	20	NIC	ENSMUSG00000039671.19	novel	5076	23	NA	NA	43	0	combination_of_known_splicesites	FALSE	canonical	3	102	junction_8	165.186623243575	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGGCGTTTCTTCATGG	NA	False	NA	-3	True	ATTAAA	-18	NA	165740893	165626074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
ENSMUSG00000039671.19_1	chr2	-	3012	9	ISM	ENSMUSG00000039671.19	ENSMUST00000109266.11	5072	22	49977	3	43926	0	3prime_fragment	FALSE	canonical	3	102	junction_8	24.3871764458291	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGGCGTTTCTTCATGG	NA	False	NA	-3	True	ATTAAA	-18	NA	165650116	165626074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594
ENSMUSG00000039671.19_10	chr2	-	3106	9	ISM	ENSMUSG00000039671.19	ENSMUST00000109269.8	6188	24	70303	-1154	43988	0	3prime_fragment	FALSE	canonical	3	58	junction_8	38.060601348376	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGGCGTTTCTTCATGG	NA	False	NA	-3	True	ATTAAA	-18	NA	165650054	165626074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438
ENSMUSG00000039676.5_0	chr15	+	905	5	FSM	ENSMUSG00000039676.5	ENSMUST00000042360.5	949	5	37	7	37	-7	multi-exon	FALSE	canonical	3	64	junction_4	9.67923034130297	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTATGAGCTTGCCTCCTT	34	False	NA	2	True	AATAAA	-15	NA	9436150	9466117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_9436254_9457782_9457920_9461742_9461921_9462676_9462887_9465840
ENSMUSG00000039676.5_1	chr15	+	708	4	FSM	ENSMUSG00000039676.5	ENSMUST00000226688.2	739	4	24	7	24	-7	multi-exon	FALSE	canonical	0	0	junction_3	38.1138644939957	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTATGAGCTTGCCTCCTT	21	False	NA	2	True	AATAAA	-15	NA	9436137	9466117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_9436254_9457782_9457920_9461742_9461921_9465840
ENSMUSG00000039678.13_13	chr2	+	897	1	ISM	ENSMUSG00000039678.13	ENSMUST00000044556.12	3595	12	17364	7	8831	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGCGTGTCGGTGCTGT	NA	False	NA	13	True	AATAAA	-12	NA	30041121	30042018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30041100_30042000
ENSMUSG00000039678.13_2	chr2	+	2371	7	ISM	ENSMUSG00000039678.13	ENSMUST00000044556.12	3595	12	15	7893	-11	1596	5prime_fragment	FALSE	canonical	3	10	junction_6	2.80871659105879	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGGAAAAAAAAAAAAAGAG	2712	False	NA	NA	False	NA	NA	NA	30023772	30034132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273
ENSMUSG00000039678.13_4	chr2	+	3542	12	FSM	ENSMUSG00000039678.13	ENSMUST00000044556.12	3595	12	46	7	1	-7	multi-exon	FALSE	canonical	1	2	junction_7	5.33195574495097	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGCGTGTCGGTGCTGT	2743	False	NA	13	True	AATAAA	-12	NA	30023803	30042018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
ENSMUSG00000039680.11_0	chr16	+	789	3	FSM	ENSMUSG00000039680.11	ENSMUST00000047429.9	846	3	53	4	53	-4	multi-exon	FALSE	canonical	3	238	junction_1	10.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGACGGCTGTATTGC	6338	False	NA	1	True	AATAAA	-13	NA	91855210	91909111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91855369_91896481_91896622_91908620
ENSMUSG00000039680.11_3	chr16	+	279	1	ISM	ENSMUSG00000039680.11	ENSMUST00000047429.9	846	3	53675	4	5684	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGACGGCTGTATTGC	NA	False	NA	1	True	AATAAA	-13	NA	91908832	91909111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_91908800_91909100
ENSMUSG00000039682.13_0	chr5	+	1668	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	63	536	63	-536	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	2643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGAATGTTGTTCTTTT	NA	False	NA	13	True	AATGAA	-20	NA	45650778	45669497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUSG00000039686.15_0	chr2	-	4114	16	FSM	ENSMUSG00000039686.15	ENSMUST00000113677.3	4189	16	71	4	-57	-4	multi-exon	FALSE	canonical	3	68	junction_8	7.41889479639656	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGAGAGTGGTGTCTTT	NA	False	NA	-6	True	AATACA	-13	NA	30014523	29987298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_29988856_29990325_29990429_29991047_29991146_29991776_29991966_29992740_29992857_29993328_29993449_29993550_29993593_29994818_29995035_29997506_29997681_29997987_29998135_29998232_29998348_30000216_30000394_30000673_30001111_30001193_30001345_30003257_30003494_30014287
ENSMUSG00000039686.15_14	chr2	-	1443	1	ISM	ENSMUSG00000039686.15	ENSMUST00000044751.14	4100	16	25721	8	3039	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGCAGGAGAGTGGTGT	NA	False	NA	-10	True	AATACA	-9	NA	29988745	29987302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_29987300_29988700
ENSMUSG00000039686.15_18	chr2	-	4146	16	NNC	ENSMUSG00000039686.15	novel	4189	16	NA	NA	26	-8	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_8	20.8859335970941	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGCAGGAGAGTGGTGT	NA	False	NA	-10	True	AATACA	-9	NA	30014565	29987302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_29988856_29990325_29990429_29991047_29991146_29991776_29991966_29992740_29992857_29993328_29993449_29993550_29993593_29994818_29995035_29997512_29997681_29997987_29998135_29998232_29998348_30000216_30000394_30000673_30001111_30001193_30001345_30003257_30003494_30014287
ENSMUSG00000039686.15_2	chr2	-	4085	16	NNC	ENSMUSG00000039686.15	novel	4189	16	NA	NA	42	-8	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_15	21.4140141029187	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGCAGGAGAGTGGTGT	NA	False	NA	-10	True	AATACA	-9	NA	30014549	29987302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_29988856_29990325_29990429_29991047_29991146_29991776_29991966_29992740_29992857_29993328_29993449_29993550_29993593_29994818_29995035_29997506_29997681_29997987_29998135_29998232_29998348_30000216_30000394_30000673_30001111_30001193_30001345_30003257_30003494_30014338
ENSMUSG00000039686.15_9	chr2	-	3326	13	ISM	ENSMUSG00000039686.15	ENSMUST00000113677.3	4189	16	13645	8	-164	-8	3prime_fragment	FALSE	canonical	3	68	junction_8	8.05665701282003	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGCAGGAGAGTGGTGT	NA	False	NA	-10	True	AATACA	-9	NA	30000949	29987302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_29988856_29990325_29990429_29991047_29991146_29991776_29991966_29992740_29992857_29993328_29993449_29993550_29993593_29994818_29995035_29997506_29997681_29997987_29998135_29998232_29998348_30000216_30000394_30000673
ENSMUSG00000039693.12_11	chr4	+	1776	4	NIC	ENSMUSG00000039693.12	novel	1597	3	NA	NA	-111	-7	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	134.127634073752	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTTATAGTTACACTG	-9	True	NA	7	True	NA	NA	NA	48540387	48561911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_48540569_48549921_48549998_48552379_48552831_48560843
ENSMUSG00000039693.12_12	chr4	+	1662	3	FSM	ENSMUSG00000039693.12	ENSMUST00000107704.2	1597	3	-67	2	-67	-1	multi-exon	FALSE	canonical	3	153	junction_1	75.5	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGTTACACTGTGTATG	-29	True	NA	13	True	NA	NA	NA	48540431	48561917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_48540569_48552379_48552831_48560843
ENSMUSG00000039693.12_24	chr4	+	1520	2	ISM	ENSMUSG00000039693.12	ENSMUST00000107704.2	1597	3	11880	8	-7568	-7	3prime_fragment	FALSE	canonical	3	304	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTTATAGTTACACTG	NA	False	NA	7	True	NA	NA	NA	48552378	48561911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_48552831_48560843
ENSMUSG00000039693.12_4	chr4	+	1667	3	FSM	ENSMUSG00000039693.12	ENSMUST00000064807.9	1378	3	52	-341	52	0	multi-exon	FALSE	canonical	3	126	junction_1	89	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTACACTGTGTATGT	2	True	NA	14	True	NA	NA	NA	48540130	48561918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_48540272_48552379_48552831_48560843
ENSMUSG00000039697.17_0	chr10	-	4926	16	FSM	ENSMUSG00000039697.17	ENSMUST00000068567.5	5105	16	169	10	169	-4	multi-exon	FALSE	canonical	1	1	junction_15	2.09337579574768	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGTGTGAATTTCTTTC	NA	False	NA	-10	True	AATAAA	-12	NA	30678934	30521589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_30523648_30523962_30524037_30524440_30524537_30528931_30529085_30530306_30530439_30538289_30538438_30565699_30565869_30566752_30567784_30570064_30570250_30572063_30572190_30574125_30574240_30577914_30578023_30580596_30580677_30598641_30598863_30647715_30647837_30678824
ENSMUSG00000039697.17_1	chr10	-	1115	1	ISM	ENSMUSG00000039697.17	ENSMUST00000215740.2	7043	15	125242	2117	9068	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTCTTTCCTAAAGACT	NA	False	NA	-1	True	AATAAA	-21	NA	30522695	30521580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_30521600_30522700
ENSMUSG00000039701.12_1	chr3	-	5778	16	FSM	ENSMUSG00000039701.12	ENSMUST00000090379.7	6185	16	87	320	48	-320	multi-exon	FALSE	canonical	3	36	junction_5	6.61177400971597	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTAAGCAGTATAGCTGG	NA	False	NA	NA	False	AAAACA	-15	NA	122778072	122725461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_122728245_122729636_122729734_122741009_122741087_122742772_122743506_122744819_122744964_122746205_122746356_122746828_122746992_122750347_122750498_122751233_122751381_122752680_122752787_122754803_122754887_122754967_122755082_122756532_122756668_122757903_122757997_122762237_122762899_122777930
ENSMUSG00000039701.12_2	chr3	-	2030	1	ISM	ENSMUSG00000039701.12	ENSMUST00000090379.7	6185	16	50673	315	15790	-315	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGTATAGCTGGTCTTT	NA	False	NA	NA	False	AAAACA	-20	NA	122727486	122725456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_122725500_122727500
ENSMUSG00000039701.12_8	chr3	-	3105	4	ISM	ENSMUSG00000039701.12	ENSMUST00000090379.7	6185	16	35243	316	360	-316	3prime_fragment	FALSE	canonical	3	39	junction_2	8.83176086632785	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCAGTATAGCTGGTCTT	NA	False	NA	NA	False	AAAACA	-19	NA	122742916	122725457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_122728245_122729636_122729734_122741009_122741087_122742772
ENSMUSG00000039703.16_1	chr11	-	3665	17	FSM	ENSMUSG00000039703.16	ENSMUST00000044271.15	4121	17	34	422	34	-422	multi-exon	FALSE	canonical	3	355	junction_10	42.5235229020362	904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTTTGAGTTACTCTTT	NA	False	NA	-3	True	AAGAAA	-21	NA	120328500	120271617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120273453_120274122_120274226_120275368_120275486_120276595_120276692_120280193_120280266_120295031_120295193_120299598_120299726_120300437_120300510_120302483_120302571_120304385_120304566_120307082_120307207_120309070_120309166_120309894_120309944_120312190_120312368_120319349_120319463_120323873_120323955_120328324
ENSMUSG00000039703.16_3	chr11	-	1794	1	ISM	ENSMUSG00000039703.16	ENSMUST00000044271.15	4121	17	55538	7	1333	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGATTGTCCTGCTCCCA	NA	False	NA	-15	True	AATAAA	-9	NA	120272996	120271202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120271200_120273000
ENSMUSG00000039704.9_0	chr15	+	8083	18	FSM	ENSMUSG00000039704.9	ENSMUST00000227556.3	8098	18	4	11	4	-11	multi-exon	FALSE	canonical	2	16	junction_6	5.43473386468287	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAACTACAGTCTTGTTG	36	False	NA	0	True	AATAAA	-10	NA	9140640	9202558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_9140828_9149062_9149293_9149541_9149640_9151570_9151667_9156292_9156461_9157299_9157511_9165874_9165950_9171183_9171298_9172143_9172328_9175210_9175393_9175872_9176007_9177738_9177845_9178348_9178447_9182571_9182676_9183996_9184044_9186682_9186789_9194761_9194889_9196742
ENSMUSG00000039704.9_1	chr15	+	7955	18	FSM	ENSMUSG00000039704.9	ENSMUST00000090380.6	3210	18	-117	-4628	-2	-10	multi-exon	FALSE	canonical	2	6	junction_9	7.56242761411209	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTACAGTCTTGTTGA	30	False	NA	1	True	AATAAA	-11	NA	9140634	9202559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_9140828_9149062_9149293_9149541_9149640_9151570_9151667_9156292_9156461_9157299_9157511_9165874_9165950_9171183_9171298_9172143_9172328_9175345_9175393_9175872_9176007_9177738_9177845_9178348_9178447_9182571_9182676_9183996_9184044_9186682_9186789_9194761_9194889_9196742
ENSMUSG00000039704.9_5	chr15	+	3265	1	ISM	ENSMUSG00000039704.9	ENSMUST00000227556.3	8098	18	58660	8	23747	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTACAGTCTTGTTGATT	2251	False	NA	3	True	AATAAA	-13	NA	9199296	9202561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_9199300_9202600
ENSMUSG00000039713.18_0	chr4	+	3815	22	FSM	ENSMUSG00000039713.18	ENSMUST00000118648.8	3818	22	0	3	0	-3	multi-exon	FALSE	canonical	3	104	junction_1	15.0256017344728	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCGTGGAAAGAGTCATGC	NA	False	NA	25	True	TATAAA	-14	NA	152171314	152199844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254_152199026_152199286
ENSMUSG00000039713.18_5	chr4	+	4262	21	NIC	ENSMUSG00000039713.18	novel	3818	22	NA	NA	7	-5	intron_retention	FALSE	canonical	3	104	junction_1	14.6574213284602	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCCGTGGAAAGAGTCAT	NA	False	NA	23	True	TATAAA	-12	NA	152171321	152199842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254_152199026_152199286
ENSMUSG00000039713.18_6	chr4	+	3893	21	NIC	ENSMUSG00000039713.18	novel	3818	22	NA	NA	-3	0	intron_retention	FALSE	canonical	3	104	junction_1	15.3631865184277	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAAAGAGTCATGCGCT	NA	False	NA	28	True	TATAAA	-17	NA	152171311	152199847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254_152199026_152199286
ENSMUSG00000039713.18_8	chr4	+	4084	21	ISM	ENSMUSG00000039713.18	ENSMUST00000118648.8	3818	22	-10	5	-10	-5	intron_retention	FALSE	canonical	3	104	junction_1	15.0860863049367	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCCGTGGAAAGAGTCAT	NA	False	NA	23	True	TATAAA	-12	NA	152171304	152199842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254
ENSMUSG00000039715.9_1	chr2	-	1762	9	FSM	ENSMUSG00000039715.9	ENSMUST00000113711.3	1814	9	38	14	18	-14	multi-exon	FALSE	canonical	3	156	junction_3	11.9973955507018	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAACTCTACCTGAG	NA	False	NA	-14	True	NA	NA	NA	29938855	29921571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_29921985_29922084_29922243_29922413_29922647_29922761_29922930_29923285_29923396_29923817_29923976_29924774_29924885_29928186_29928439_29938695
ENSMUSG00000039715.9_3	chr2	-	171	1	ISM	ENSMUSG00000039715.9	ENSMUST00000113711.3	1814	9	17150	15	774	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAACTCTACCTGA	NA	False	NA	-15	True	NA	NA	NA	29921743	29921572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_29921600_29921700
ENSMUSG00000039720.8_12	chr8	-	2296	9	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	8	0	intron_retention	FALSE	canonical	3	68	junction_5	19.8899314981224	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATTCATTGCTATGTTC	NA	False	NA	-12	True	AATAAA	-12	NA	27713848	27687491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_27687710_27687955_27688099_27688420_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
ENSMUSG00000039720.8_15	chr8	-	2592	8	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	1	-1	intron_retention	FALSE	canonical	3	78	junction_7	15.556349186104	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTGCTATGTTCTCCT	NA	False	NA	-8	True	AATAAA	-16	NA	27713855	27687487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_27687710_27687955_27688099_27688420_27689446_27689537_27689631_27689865_27690373_27690749_27690932_27692399_27692680_27713715
ENSMUSG00000039720.8_21	chr8	-	1377	10	NNC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_9	32.9807276308715	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATTCATTGCTATGTTC	NA	False	NA	-12	True	AATAAA	-12	NA	27713830	27687491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689971_27690260_27690373_27690749_27690932_27692399_27692492_27713715
ENSMUSG00000039720.8_3	chr8	-	1579	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	21	-1	combination_of_known_junctions	FALSE	canonical	3	68	junction_6	20.0831604418561	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTGCTATGTTCTCCT	NA	False	NA	-8	True	AATAAA	-16	NA	27713835	27687487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
ENSMUSG00000039720.8_32	chr8	-	2405	8	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	-1	intron_retention	FALSE	canonical	3	36	junction_7	28.8097205817759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTGCTATGTTCTCCT	NA	False	NA	-8	True	AATAAA	-16	NA	27713856	27687487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_27687710_27687955_27688099_27688420_27689446_27689537_27689631_27689865_27690373_27690749_27690932_27692399_27692492_27713715
ENSMUSG00000039720.8_4	chr8	-	1385	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	26	-2	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	28.2016547977833	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCATTGCTATGTTCTCC	NA	False	NA	-9	True	AATAAA	-15	NA	27713830	27687488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692492_27713715
ENSMUSG00000039720.8_6	chr8	-	1286	3	FSM	ENSMUSG00000039720.8	ENSMUST00000209281.2	686	3	-596	-4	-596	-1	multi-exon	FALSE	canonical	3	112	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTGCTATGTTCTCCT	NA	False	NA	-8	True	AATAAA	-16	NA	27689341	27687487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_27687710_27687955_27688099_27688420
ENSMUSG00000039720.8_7	chr8	-	2112	9	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	1	-3	intron_retention	FALSE	canonical	3	36	junction_8	29.3297523855896	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAACTATTCATTGCTATG	NA	False	NA	-15	True	AATAAA	-9	NA	27713855	27687494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_27687710_27687955_27688099_27688420_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692492_27713715
ENSMUSG00000039725.7_0	chr2	-	1869	2	FSM	ENSMUSG00000039725.7	ENSMUST00000039007.7	1880	2	0	11	0	-11	multi-exon	FALSE	canonical	3	240	junction_1	0	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAGAACAGTTTTCGGA	NA	False	NA	-28	True	NA	NA	NA	165335244	165332040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_165333632_165334966
ENSMUSG00000039725.7_1	chr2	-	1449	1	ISM	ENSMUSG00000039725.7	ENSMUST00000039007.7	1880	2	1756	10	1548	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACAGTTTTCGGAG	NA	False	NA	-27	True	NA	NA	NA	165333488	165332039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_165332000_165333500
ENSMUSG00000039735.17_0	chr3	-	3997	15	NIC	ENSMUSG00000039735.17	novel	5357	15	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	12.9545910229319	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAAGATGTGTACTTATC	NA	False	NA	-5	True	AATAAA	-18	NA	122413363	122332373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_122334574_122335773_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
ENSMUSG00000039735.17_3	chr3	-	2121	1	ISM	ENSMUSG00000039735.17	ENSMUST00000197259.5	3553	12	23036	6	14267	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAAGATGTGTACTTATC	NA	False	NA	-5	True	AATAAA	-18	NA	122334494	122332373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_122332400_122334500
ENSMUSG00000039735.17_6	chr3	-	5194	14	FSM	ENSMUSG00000039735.17	ENSMUST00000162409.8	5198	14	3	1	3	-1	multi-exon	FALSE	canonical	3	68	junction_7	9.36820759854666	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTAAGATGTGTACTTAT	NA	False	NA	-6	True	AATAAA	-17	NA	122413361	122332374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
ENSMUSG00000039737.12_0	chr5	-	904	6	FSM	ENSMUSG00000039737.12	ENSMUST00000151786.8	3893	6	30	2959	-23	-2	multi-exon	FALSE	canonical	3	446	junction_2	42.6164287569946	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTCTTGTCCACACGTG	NA	False	NA	-15	True	AGTAAA	-14	NA	136227787	136209939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_136210351_136218405_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
ENSMUSG00000039737.12_12	chr5	-	3183	5	NIC	ENSMUSG00000039737.12	novel	3893	6	NA	NA	-22	-2	intron_retention	FALSE	canonical	3	535	junction_2	13.3860935302276	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTCTTGTCCACACGTG	NA	False	NA	-15	True	AGTAAA	-14	NA	136227786	136209939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_136210351_136218405_136220840_136223150_136223252_136226633_136226713_136227628
ENSMUSG00000039738.17_1	chr16	-	6132	16	NIC	ENSMUSG00000039738.17	novel	5706	15	NA	NA	-7	-16	combination_of_known_junctions	FALSE	canonical	3	32	junction_12	9.12724858139991	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	4	True	AATAAA	-20	NA	3821641	3797012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448_3799552_3802854_3805041_3805778_3805946_3806836_3806984_3808094_3808181_3808566_3808781_3809335_3809653_3809779_3809986_3812571_3812785_3813557_3813742_3816981_3817210_3818816_3819543_3821595
ENSMUSG00000039738.17_13	chr16	-	2714	4	FSM	ENSMUSG00000039738.17	ENSMUST00000145706.2	1945	4	-785	16	-785	-16	multi-exon	FALSE	canonical	3	55	junction_1	1.69967317119759	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	4	True	AATAAA	-20	NA	3800853	3797012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448
ENSMUSG00000039738.17_22	chr16	-	5941	15	NIC	ENSMUSG00000039738.17	novel	5706	15	NA	NA	0	-16	combination_of_known_splicesites	FALSE	canonical	2	2	junction_12	14.9829835452879	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	4	True	AATAAA	-20	NA	3821634	3797012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448_3799552_3802854_3805041_3805778_3805946_3806836_3806984_3808094_3808181_3808566_3808781_3809335_3809653_3809779_3809986_3812571_3812785_3816981_3817210_3818816_3819543_3821595
ENSMUSG00000039738.17_26	chr16	-	3838	7	ISM	ENSMUSG00000039738.17	ENSMUST00000156542.8	5116	14	6679	19	67	-10	3prime_fragment	FALSE	canonical	3	45	junction_4	6.02771377334171	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAAACTAGA	NA	False	NA	10	True	AATAAA	-26	NA	3806903	3797006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448_3799552_3802854_3805041_3805778_3805946_3806836
ENSMUSG00000039738.17_4	chr16	-	2657	5	ISM	ENSMUSG00000039738.17	ENSMUST00000156542.8	5116	14	9483	25	-716	-16	3prime_fragment	FALSE	canonical	3	45	junction_4	5.53962995154008	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	4	True	AATAAA	-20	NA	3804099	3797012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448_3799552_3802854
ENSMUSG00000039738.17_6	chr16	-	4332	10	ISM	ENSMUSG00000039738.17	ENSMUST00000156542.8	5116	14	4127	25	-2485	-16	3prime_fragment	FALSE	canonical	3	43	junction_9	6.63511050081494	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	4	True	AATAAA	-20	NA	3809455	3797012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448_3799552_3802854_3805041_3805778_3805946_3806836_3806984_3808094_3808181_3808566_3808781_3809335
ENSMUSG00000039738.17_9	chr16	-	6266	16	NIC	ENSMUSG00000039738.17	novel	5706	15	NA	NA	15	-16	combination_of_known_junctions	FALSE	canonical	3	6	junction_15	13.6521874519149	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	4	True	AATAAA	-20	NA	3821601	3797012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448_3799552_3802854_3805041_3805778_3805946_3806836_3806984_3808094_3808181_3808566_3808781_3809335_3809653_3809779_3809986_3812571_3812785_3813557_3813742_3816981_3817210_3818816_3819543_3821421
ENSMUSG00000039740.7_0	chr4	-	2982	2	FSM	ENSMUSG00000039740.7	ENSMUST00000044148.3	3021	2	26	13	26	-13	multi-exon	FALSE	canonical	3	118	junction_1	0	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGTAATCAGATGGTCCA	9	True	NA	-15	True	AATAAA	-2	NA	47474307	47469845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_47472459_47473938
ENSMUSG00000039740.7_2	chr4	-	1695	1	ISM	ENSMUSG00000039740.7	ENSMUST00000044148.3	3021	2	2766	40	-797	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTCACCTGTAAGAATAT	2749	False	NA	-3	True	ATTAAA	-15	NA	47471567	47469872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_47469900_47471600
ENSMUSG00000039740.7_3	chr4	-	2909	2	FSM	ENSMUSG00000039740.7	ENSMUST00000143104.2	531	2	-324	-2054	32	-7	multi-exon	FALSE	canonical	2	6	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGATGGTCCAGTTTAT	15	True	NA	-9	True	AATAAA	-8	NA	47474301	47469839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_47472386_47473938
ENSMUSG00000039741.16_1	chr11	+	10875	27	NIC	ENSMUSG00000039741.16	novel	10712	28	NA	NA	-15	-6	intron_retention	TRUE	canonical	0	0	junction_16	9.59574918215685	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTGTTCAGTGGTCCGG	NA	False	NA	NA	False	AATAAA	-15	NA	120123757	120183102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_120123934_120127685_120128084_120149897_120150078_120159132_120159256_120162184_120163931_120164140_120164250_120164519_120164699_120164809_120164969_120165244_120165523_120165697_120166029_120166883_120167700_120169880_120170081_120170195_120170333_120170895_120171025_120172944_120173060_120173921_120174211_120174817_120175001_120175079_120175382_120175545_120175654_120175737_120175889_120175970_120176086_120176184_120176261_120176396_120176506_120177126_120177244_120177418_120178931_120180133_120180371_120180502
ENSMUSG00000039741.16_13	chr11	+	5135	11	ISM	ENSMUSG00000039741.16	ENSMUST00000118987.2	10712	27	47593	6	-5501	-6	3prime_fragment	FALSE	canonical	3	17	junction_4	5.82151183113115	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTGTTCAGTGGTCCGG	NA	False	NA	NA	False	AATAAA	-15	NA	120175117	120183102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120175382_120175545_120175654_120175737_120175889_120175970_120176086_120176184_120176261_120176396_120176506_120177126_120177244_120177418_120177596_120177749_120178931_120180133_120180371_120180502
ENSMUSG00000039741.16_15	chr11	+	4766	9	ISM	ENSMUSG00000039741.16	ENSMUST00000118987.2	10712	27	48210	6	-4884	-6	3prime_fragment	FALSE	canonical	3	17	junction_2	6.25999201277446	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTGTTCAGTGGTCCGG	NA	False	NA	NA	False	AATAAA	-15	NA	120175734	120183102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120175889_120175970_120176086_120176184_120176261_120176396_120176506_120177126_120177244_120177418_120177596_120177749_120178931_120180133_120180371_120180502
ENSMUSG00000039741.16_17	chr11	+	3917	3	ISM	ENSMUSG00000039741.16	ENSMUST00000118987.2	10712	27	50321	11	-2773	-11	3prime_fragment	FALSE	canonical	3	30	junction_2	4.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTACAGGTGTTCAGTGG	NA	False	NA	NA	False	AATAAA	-10	NA	120177845	120183097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120178931_120180133_120180371_120180502
ENSMUSG00000039741.16_18	chr11	+	2269	1	ISM	ENSMUSG00000039741.16	ENSMUST00000122148.8	10712	28	57061	6	215	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTGTTCAGTGGTCCGG	NA	False	NA	NA	False	AATAAA	-15	NA	120180833	120183102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120180800_120183100
ENSMUSG00000039741.16_2	chr11	+	10698	28	FSM	ENSMUSG00000039741.16	ENSMUST00000122148.8	10712	28	8	6	8	-6	multi-exon	FALSE	canonical	0	0	junction_16	9.4800346118264	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTGTTCAGTGGTCCGG	NA	False	NA	NA	False	AATAAA	-15	NA	120123780	120183102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120123934_120127685_120128084_120149897_120150078_120159132_120159256_120162184_120163931_120164140_120164250_120164519_120164699_120164809_120164969_120165244_120165523_120165697_120166029_120166883_120167700_120169880_120170081_120170195_120170333_120170895_120171025_120172944_120173060_120173921_120174211_120174817_120175001_120175079_120175382_120175545_120175654_120175737_120175889_120175970_120176086_120176184_120176261_120176396_120176506_120177126_120177244_120177418_120177596_120177749_120178931_120180133_120180371_120180502
ENSMUSG00000039741.16_31	chr11	+	5955	16	ISM	ENSMUSG00000039741.16	ENSMUST00000118987.2	10712	27	42734	14	-10360	-14	3prime_fragment	FALSE	canonical	0	0	junction_4	9.98309682524527	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATTGTACAGGTGTTCAG	5475	False	NA	NA	False	AATAAA	-7	NA	120170258	120183094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120170333_120170895_120171025_120172944_120173060_120173921_120174211_120174817_120175001_120175079_120175382_120175545_120175654_120175737_120175889_120175970_120176086_120176184_120176261_120176396_120176506_120177126_120177244_120177418_120177596_120177749_120178931_120180133_120180371_120180502
ENSMUSG00000039741.16_32	chr11	+	5707	14	ISM	ENSMUSG00000039741.16	ENSMUST00000118987.2	10712	27	45475	4	-7619	-4	3prime_fragment	FALSE	canonical	0	0	junction_2	9.3276962407533	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTTCAGTGGTCCGGAT	8216	False	NA	NA	False	AATAAA	-17	NA	120172999	120183104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120173060_120173921_120174211_120174817_120175001_120175079_120175382_120175545_120175654_120175737_120175889_120175970_120176086_120176184_120176261_120176396_120176506_120177126_120177244_120177418_120177596_120177749_120178931_120180133_120180371_120180502
ENSMUSG00000039741.16_33	chr11	+	4257	5	ISM	ENSMUSG00000039741.16	ENSMUST00000118987.2	10712	27	49656	7	-3438	-7	3prime_fragment	FALSE	canonical	3	23	junction_2	6.17960354715414	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGGTGTTCAGTGGTCCG	NA	False	NA	NA	False	AATAAA	-14	NA	120177180	120183101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120177244_120177418_120177596_120177749_120178931_120180133_120180371_120180502
ENSMUSG00000039741.16_34	chr11	+	2841	2	ISM	ENSMUSG00000039741.16	ENSMUST00000118987.2	10712	27	52605	6	-489	-6	3prime_fragment	FALSE	canonical	3	30	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTGTTCAGTGGTCCGG	NA	False	NA	NA	False	AATAAA	-15	NA	120180129	120183102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120180371_120180502
ENSMUSG00000039741.16_8	chr11	+	6743	18	ISM	ENSMUSG00000039741.16	ENSMUST00000118987.2	10712	27	39658	6	-13436	-6	3prime_fragment	FALSE	canonical	0	0	junction_6	10.5967286196942	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTGTTCAGTGGTCCGG	2399	False	NA	NA	False	AATAAA	-15	NA	120167182	120183102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120167700_120169880_120170081_120170195_120170333_120170895_120171025_120172944_120173060_120173921_120174211_120174817_120175001_120175079_120175382_120175545_120175654_120175737_120175889_120175970_120176086_120176184_120176261_120176396_120176506_120177126_120177244_120177418_120177596_120177749_120178931_120180133_120180371_120180502
ENSMUSG00000039745.9_0	chr7	+	1226	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-1	15	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	90.6598036618214	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAACCCTGTGTGTTGTTC	9879	False	NA	10	True	AATAAA	-10	NA	49408861	49423738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_49408894_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_1	chr7	+	1275	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	3	12	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAACCCTGTGTGTTG	9883	False	NA	7	True	AATAAA	-7	NA	49408865	49423735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_2	chr7	+	1357	6	FSM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	-3	-16	-3	16	multi-exon	FALSE	canonical	3	128	junction_1	54.5688555863141	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAACCCTGTGTGTTGTTCT	9915	False	NA	11	True	AATAAA	-11	NA	49408897	49423739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_6	chr7	+	1280	5	ISM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	359	-15	359	15	3prime_fragment	FALSE	canonical	3	230	junction_1	21.9928965804871	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAACCCTGTGTGTTGTTC	NA	False	NA	10	True	AATAAA	-10	NA	49409259	49423738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_7	chr7	+	1413	6	FSM	ENSMUSG00000039745.9	ENSMUST00000085272.7	1418	6	5	0	5	0	multi-exon	TRUE	canonical	3	12	junction_1	99.2685247195706	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9899	False	NA	-5	True	NA	NA	NA	49408881	49423723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_49409060_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039747.12_0	chr5	-	3845	3	FSM	ENSMUSG00000039747.12	ENSMUST00000041048.6	3908	3	58	5	-21	0	multi-exon	FALSE	canonical	0	0	junction_2	1	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTCTGTGCTCTTGAG	NA	False	NA	NA	False	AATAAA	-15	NA	136199509	136176317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_136179807_136190340_136190579_136199391
ENSMUSG00000039747.12_1	chr5	-	2993	1	ISM	ENSMUSG00000039747.12	ENSMUST00000041048.6	3908	3	20257	5	20172	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTCTGTGCTCTTGAG	NA	False	NA	NA	False	AATAAA	-15	NA	136179310	136176317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_136176300_136179300
ENSMUSG00000039748.12_0	chr1	+	2825	15	FSM	ENSMUSG00000039748.12	ENSMUST00000039725.12	7796	15	214	4757	1	0	multi-exon	FALSE	canonical	3	208	junction_2	66.5922714152693	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCTGGGAAGTTTAAATG	9767	False	NA	5	True	AATAAA	-13	NA	175708360	175736298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
ENSMUSG00000039748.12_1	chr1	+	2979	15	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	175	junction_2	73.1663257550206	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCTGGGAAGTTTAAATG	9767	False	NA	5	True	AATAAA	-13	NA	175708360	175736298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
ENSMUSG00000039753.17_0	chr5	-	2811	11	FSM	ENSMUSG00000039753.17	ENSMUST00000047857.16	2858	11	38	9	-3	-1	multi-exon	FALSE	canonical	3	499	junction_3	32.2155242080584	833	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGCAATATCTTTTGTG	8866	False	NA	-10	True	AATAAA	-19	NA	43939454	43901966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
ENSMUSG00000039754.11_0	chr5	+	1761	3	FSM	ENSMUSG00000039754.11	ENSMUST00000041100.4	1773	3	7	5	3	-5	multi-exon	FALSE	canonical	3	62	junction_2	0.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAAATGAATTTCTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	136165014	136170461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136165149_136168191_136168390_136169032
ENSMUSG00000039754.11_1	chr5	+	1804	3	FSM	ENSMUSG00000039754.11	ENSMUST00000143229.2	641	3	-59	-1104	-3	-5	multi-exon	FALSE	canonical	1	2	junction_2	30.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAAATGAATTTCTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	136164996	136170461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136165149_136168191_136168415_136169032
ENSMUSG00000039754.11_2	chr5	+	1643	3	FSM	ENSMUSG00000039754.11	ENSMUST00000136634.8	557	3	9	-1095	1	-5	multi-exon	FALSE	canonical	3	9	junction_1	26.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAAATGAATTTCTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	136165008	136170461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136165149_136168315_136168390_136169032
ENSMUSG00000039754.11_3	chr5	+	1841	3	FSM	ENSMUSG00000039754.11	ENSMUST00000125923.2	1040	3	31	-832	-13	-2	multi-exon	FALSE	canonical	2	7	junction_1	27.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGAATTTCTCCTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	136165042	136170464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136165254_136168191_136168390_136169032
ENSMUSG00000039754.11_6	chr5	+	1405	1	ISM	ENSMUSG00000039754.11	ENSMUST00000041100.4	1773	3	4052	2	1425	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGAATTTCTCCTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	136169059	136170464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_136169100_136170500
ENSMUSG00000039754.11_7	chr5	+	1555	2	ISM	ENSMUSG00000039754.11	ENSMUST00000100568.3	1714	3	634	3	634	0	3prime_fragment	FALSE	canonical	3	62	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATTTCTCCTTTTCC	NA	False	NA	NA	False	AATAAA	-23	NA	136168268	136170466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_136168390_136169032
ENSMUSG00000039756.13_0	chr3	+	2399	7	FSM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	20	10	-10	-10	multi-exon	FALSE	canonical	3	1082	junction_6	112.264073604258	1687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATCAATTGTGTGCCT	NA	False	NA	13	True	AATAAA	-9	NA	122068056	122078910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
ENSMUSG00000039756.13_11	chr3	+	2089	6	ISM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	1049	10	-580	-10	3prime_fragment	FALSE	canonical	3	1082	junction_5	120.346167367308	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATCAATTGTGTGCCT	NA	False	NA	13	True	AATAAA	-9	NA	122069085	122078910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
ENSMUSG00000039759.11_0	chr4	-	1104	4	FSM	ENSMUSG00000039759.11	ENSMUST00000036680.8	1124	4	19	1	2	-1	multi-exon	FALSE	canonical	3	153	junction_2	10.8730042868667	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGGCTGTCACTCGGT	NA	False	NA	-4	True	AATAAA	-15	NA	152073435	152067096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_152067810_152068091_152068194_152070125_152070319_152073339
ENSMUSG00000039759.11_1	chr4	-	1002	3	FSM	ENSMUSG00000039759.11	ENSMUST00000105665.3	832	3	-8	-162	2	-1	multi-exon	FALSE	canonical	3	60	junction_1	59.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGGCTGTCACTCGGT	NA	False	NA	-4	True	AATAAA	-15	NA	152073435	152067096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_152067810_152070125_152070319_152073339
ENSMUSG00000039759.11_3	chr4	-	1268	2	FSM	ENSMUSG00000039759.11	ENSMUST00000146471.2	501	2	8	-775	-2	775	multi-exon	FALSE	canonical	3	179	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	152073429	152069140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_152070319_152073339
ENSMUSG00000039763.11_0	chr16	-	3371	2	FSM	ENSMUSG00000039763.11	ENSMUST00000049244.10	3368	2	-3	0	-3	0	multi-exon	FALSE	canonical	2	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGGTCCATTGATCT	9246	False	NA	NA	False	AATAAA	-16	NA	91415890	91411141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_91414268_91415645
ENSMUSG00000039763.11_1	chr16	-	3530	2	FSM	ENSMUSG00000039763.11	ENSMUST00000169982.2	3535	2	5	0	-3	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTCTGTGGTCCATTGA	9254	False	NA	NA	False	AATAAA	-13	NA	91415882	91411144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_91414268_91415475
ENSMUSG00000039765.16_0	chr5	+	4961	35	NIC	ENSMUSG00000039765.16	novel	4512	34	NA	NA	10	-6	combination_of_known_junctions	FALSE	canonical	3	10	junction_9	5.72140097054418	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACTGTTTTAGTCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	43829640	43898308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_43829747_43831033_43831158_43838630_43838720_43839040_43839146_43840441_43840544_43841381_43841556_43842599_43842763_43845465_43845603_43846259_43846392_43852426_43852637_43853867_43853975_43857280_43857422_43860532_43860690_43861202_43861445_43863398_43863577_43864084_43864242_43866385_43866534_43867846_43867986_43869581_43869786_43871850_43871944_43873095_43873188_43875894_43876063_43877682_43877789_43879730_43879841_43881042_43881140_43881615_43881715_43883537_43883715_43887198_43887403_43889719_43889810_43891169_43891284_43892657_43892793_43893375_43893499_43894837_43894897_43896639_43896818_43898007
ENSMUSG00000039765.16_13	chr5	+	2956	21	NIC	ENSMUSG00000039765.16	novel	5484	40	NA	NA	9493	-4	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	4.97468591973403	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTTTTAGTCTGTCT	7281	False	NA	NA	False	AATAAA	-15	NA	43863416	43898310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_43863577_43864084_43864242_43866385_43866534_43867846_43867986_43869581_43869786_43871850_43871944_43873095_43873188_43875894_43876063_43877682_43877789_43879730_43879841_43881042_43881140_43881615_43881715_43883537_43883715_43887198_43887403_43889719_43889810_43891169_43891284_43892657_43892793_43893375_43893499_43894837_43894897_43896639_43896818_43898007
ENSMUSG00000039765.16_7	chr5	+	3212	22	NIC	ENSMUSG00000039765.16	novel	5484	40	NA	NA	7282	-5	combination_of_known_junctions	FALSE	canonical	3	14	junction_2	4.95054911175887	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACTGTTTTAGTCTGTC	5070	False	NA	NA	False	AATAAA	-14	NA	43861205	43898309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_43861445_43863398_43863577_43864084_43864242_43866385_43866534_43867846_43867986_43869581_43869786_43871850_43871944_43873095_43873188_43875894_43876063_43877682_43877789_43879730_43879841_43881042_43881140_43881615_43881715_43883537_43883715_43887198_43887403_43889719_43889810_43891169_43891284_43892657_43892793_43893375_43893499_43894837_43894897_43896639_43896818_43898007
ENSMUSG00000039768.17_0	chr4	+	2188	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	44	919	1	0	multi-exon	FALSE	canonical	3	755	junction_7	69.5258864660415	1238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAATGGGTTTGGAAAC	9114	False	NA	24	True	TATAAA	-16	NA	152018191	152065675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
ENSMUSG00000039770.7_0	chr17	+	1182	3	FSM	ENSMUSG00000039770.7	ENSMUST00000045174.7	3120	3	249	1689	249	672	multi-exon	FALSE	canonical	3	244	junction_1	49	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTGGTCCTCTGTTAC	994	False	NA	12	True	AATAAA	-12	NA	73143696	73156501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_73143787_73153273_73153439_73155574
ENSMUSG00000039770.7_3	chr17	+	1307	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233886.2	704	3	69	-672	69	672	multi-exon	FALSE	canonical	3	29	junction_1	156.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTGGTCCTCTGTTAC	1897	False	NA	12	True	AATAAA	-12	NA	73144599	73156501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_73144815_73153273_73153439_73155574
ENSMUSG00000039770.7_4	chr17	+	1209	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233210.2	2419	3	279	931	56	672	multi-exon	FALSE	canonical	3	101	junction_1	120.5	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTGGTCCTCTGTTAC	1884	False	NA	12	True	AATAAA	-12	NA	73144586	73156501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_73144704_73153273_73153439_73155574
ENSMUSG00000039771.14_0	chr5	+	563	4	FSM	ENSMUSG00000039771.14	ENSMUST00000041366.14	646	4	75	8	4	3	multi-exon	FALSE	canonical	3	1103	junction_2	77.5471182930453	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGGGCTGTGCAGTGT	9287	False	NA	22	True	AATAAA	-11	NA	136145559	136151793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136145660_136148848_136148939_136150942_136151118_136151595
ENSMUSG00000039774.13_0	chr4	+	2230	10	FSM	ENSMUSG00000039774.13	ENSMUST00000045041.12	2288	10	30	28	16	-1	multi-exon	FALSE	canonical	3	17	junction_3	5.3748384988657	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGTTGATGCCACAGCCA	-3	True	NA	5	True	AATAAA	-15	NA	47091938	47123042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_47092329_47104099_47104270_47108390_47108581_47111455_47111642_47112321_47112440_47113727_47113905_47117903_47118036_47119514_47119629_47120361_47120509_47122436
ENSMUSG00000039774.13_1	chr4	+	1701	8	NIC	ENSMUSG00000039774.13	novel	2077	9	NA	NA	8	-178	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	9.09361740733688	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATACAAAGCTTCCTGG	-11	True	NA	NA	False	AAAAAG	-18	NA	47091930	47122865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_47092329_47111455_47111642_47112321_47112440_47113727_47113905_47117903_47118036_47119514_47119629_47120361_47120509_47122436
ENSMUSG00000039774.13_3	chr4	+	1830	9	FSM	ENSMUSG00000039774.13	ENSMUST00000107744.2	2077	9	18	229	18	-229	multi-exon	FALSE	canonical	1	1	junction_1	8.53577032258952	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGGTGCCTTTTATTCT	-1	True	NA	NA	False	NA	NA	NA	47091940	47122814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_47092329_47108390_47108581_47111455_47111642_47112321_47112440_47113727_47113905_47117903_47118036_47119514_47119629_47120361_47120509_47122436
ENSMUSG00000039781.15_0	chr11	-	3586	26	FSM	ENSMUSG00000039781.15	ENSMUST00000106227.8	3578	26	-14	6	-14	-2	multi-exon	FALSE	canonical	0	0	junction_17	26.0287840668749	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGCTTCATGTCACCTGC	NA	False	NA	-15	True	AGTAAA	-21	NA	119977667	119955261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_119955536_119955610_119955672_119956213_119956378_119956463_119956642_119956736_119956880_119957519_119957595_119957746_119957865_119957955_119958064_119958771_119958974_119959523_119959627_119961114_119961232_119961310_119961437_119961617_119961729_119962184_119962362_119962702_119962886_119963235_119963331_119963663_119963803_119963953_119964071_119964566_119964685_119966389_119966537_119966914_119967029_119967744_119967867_119968152_119968268_119972069_119972165_119974621_119974816_119977477
ENSMUSG00000039782.16_1	chr5	+	6192	10	NIC	ENSMUSG00000039782.16	novel	7050	11	NA	NA	74	-2	combination_of_known_junctions	TRUE	canonical	2	3	junction_2	4.92160768674447	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGCTGTGTAATCTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	43391343	43447064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_43392432_43394649_43394932_43401928_43402020_43419076_43419128_43434773_43434945_43435946_43436037_43438452_43438572_43438713_43438829_43441279_43441462_43443061
ENSMUSG00000039782.16_10	chr5	+	3036	1	ISM	ENSMUSG00000039782.16	ENSMUST00000166713.9	7139	12	53518	0	49373	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTGTGTAATCTTATTC	NA	False	NA	NA	False	AATAAA	-17	NA	43444030	43447066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_43444000_43447100
ENSMUSG00000039782.16_2	chr5	+	7038	11	FSM	ENSMUSG00000039782.16	ENSMUST00000114065.9	7116	11	75	3	75	-2	multi-exon	TRUE	canonical	2	6	junction_3	4.68614980554399	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGCTGTGTAATCTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	43390587	43447064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_43392432_43394649_43394932_43395669_43395760_43401928_43402020_43419076_43419128_43434773_43434945_43435946_43436037_43438452_43438572_43438713_43438829_43441279_43441462_43443061
ENSMUSG00000039782.16_7	chr5	+	6951	6	ISM	ENSMUSG00000039782.16	ENSMUST00000166713.9	7139	12	41992	0	37847	0	3prime_fragment	FALSE	canonical	3	13	junction_4	2.71293199325011	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTGTGTAATCTTATTC	NA	False	NA	NA	False	AATAAA	-17	NA	43432504	43447066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_43434945_43435946_43436037_43438452_43438572_43438713_43438829_43441279_43441462_43443061
ENSMUSG00000039782.16_8	chr5	+	4509	5	ISM	ENSMUSG00000039782.16	ENSMUST00000166713.9	7139	12	45434	2	41289	-2	3prime_fragment	FALSE	canonical	3	13	junction_3	2.8613807855649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGCTGTGTAATCTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	43435946	43447064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_43436037_43438452_43438572_43438713_43438829_43441279_43441462_43443061
ENSMUSG00000039787.14_1	chr2	+	2677	12	NIC	ENSMUSG00000039787.14	novel	599	4	NA	NA	-11	1	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	6.67547627297666	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACAGCTGAGCCTCTTTG	NA	False	NA	20	True	AATAAA	-31	NA	29759164	29772853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29759358_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29763025_29765616_29765737_29765999_29766077_29766172_29766280_29768015_29768149_29770624_29770753_29770926_29771131_29771707
ENSMUSG00000039787.14_2	chr2	+	2707	12	FSM	ENSMUSG00000039787.14	ENSMUST00000047521.7	2715	12	7	1	7	-1	multi-exon	FALSE	canonical	2	9	junction_10	4.78288961380578	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAACAGCTGAGCCTCTT	NA	False	NA	18	True	AATAAA	-29	NA	29759512	29772851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29759738_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29763025_29765616_29765737_29765999_29766077_29766172_29766280_29768015_29768149_29770624_29770753_29770926_29771131_29771707
ENSMUSG00000039789.8_0	chr16	-	3407	1	ISM	ENSMUSG00000039789.8	ENSMUST00000090522.5	5668	3	7440	22	868	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCAGGTGGTGAACTTTT	NA	False	NA	-7	True	AATAAA	-11	NA	3682820	3679413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_3679400_3682800
ENSMUSG00000039789.8_1	chr16	-	5560	3	FSM	ENSMUSG00000039789.8	ENSMUST00000090522.5	5668	3	83	25	83	-25	multi-exon	FALSE	canonical	3	7	junction_2	9.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACAGCAGGTGGTGAACT	NA	False	NA	-10	True	AATAAA	-8	NA	3690177	3679416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_3684595_3689013_3689141_3689922
ENSMUSG00000039789.8_2	chr16	-	4726	3	FSM	ENSMUSG00000039789.8	ENSMUST00000119599.3	1842	3	24	-2908	24	2	multi-exon	FALSE	canonical	3	18	junction_2	4	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTGTTATTTCTGATG	4414	False	NA	-2	True	AATAAA	-39	NA	3702401	3680245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_3684595_3689013_3689141_3702151
ENSMUSG00000039795.15_0	chr3	-	4086	8	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	0	-24	combination_of_known_splicesites	FALSE	canonical	3	88	junction_7	242.301296668728	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTTCCTGTAACAAAGCG	NA	False	NA	-27	True	AATAAA	-19	NA	10416374	10405038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10416118_10416301
ENSMUSG00000039795.15_12	chr3	-	3694	7	FSM	ENSMUSG00000039795.15	ENSMUST00000140634.2	743	7	-2113	-838	575	-24	multi-exon	FALSE	canonical	3	339	junction_1	180.261846582502	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTTCCTGTAACAAAGCG	NA	False	NA	-27	True	AATAAA	-19	NA	10415798	10405038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569
ENSMUSG00000039795.15_2	chr3	-	1581	8	FSM	ENSMUSG00000039795.15	ENSMUST00000037839.12	1610	8	3	26	0	-24	multi-exon	FALSE	canonical	3	339	junction_1	173.164190104923	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTTCCTGTAACAAAGCG	NA	False	NA	-27	True	AATAAA	-19	NA	10416374	10405038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416301
ENSMUSG00000039795.15_5	chr3	-	1783	8	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	3	-25	combination_of_known_junctions	FALSE	canonical	3	120	junction_6	235.712813848219	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCTTCCTGTAACAAAGC	NA	False	NA	-28	True	AATAAA	-18	NA	10416370	10405039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412472_10413569_10413613_10416301
ENSMUSG00000039795.15_6	chr3	-	4288	8	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	4	-24	combination_of_known_splicesites	FALSE	canonical	3	88	junction_7	262.710595794797	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTTCCTGTAACAAAGCG	NA	False	NA	-27	True	AATAAA	-19	NA	10416369	10405038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412472_10413569_10416118_10416301
ENSMUSG00000039801.8_1	chr15	+	10517	53	FSM	ENSMUSG00000039801.8	ENSMUST00000110617.2	10469	53	-49	1	-49	-1	multi-exon	TRUE	canonical	2	15	junction_2	13.020182330866	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTTGCCCACAGTCTG	NA	False	NA	7	True	AATAAA	-14	NA	8198540	8300641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_8198974_8199789_8199879_8201176_8201306_8204209_8204346_8204440_8204561_8205602_8205836_8207820_8207928_8209241_8209399_8210362_8210467_8211599_8211783_8215566_8215817_8215982_8216136_8216307_8217063_8217870_8218080_8218280_8218362_8223807_8223973_8228664_8228824_8230617_8230847_8231677_8231818_8232744_8232963_8233156_8233322_8239445_8239585_8241852_8241963_8242112_8242272_8243190_8243300_8245791_8246084_8247906_8248880_8250341_8250452_8251266_8251434_8251820_8251892_8252554_8252635_8256396_8256578_8256769_8257052_8258073_8258815_8259698_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
ENSMUSG00000039801.8_15	chr15	+	5846	29	NIC	ENSMUSG00000039801.8	novel	10469	53	NA	NA	353	-4	combination_of_known_junctions	FALSE	canonical	2	15	junction_3	13.1494548657085	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTTCCTTGCCCACAGT	NA	False	NA	4	True	AATAAA	-11	NA	8245805	8300638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_8246084_8247906_8248880_8250341_8250452_8251266_8251434_8251820_8251892_8252554_8252635_8254822_8254901_8256396_8256578_8256769_8257052_8258073_8258815_8259698_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
ENSMUSG00000039801.8_16	chr15	+	5178	28	NIC	ENSMUSG00000039801.8	novel	10469	53	NA	NA	2845	-3	combination_of_known_junctions	FALSE	canonical	2	15	junction_2	13.3693956759736	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTCCTTGCCCACAGTC	NA	False	NA	5	True	AATAAA	-12	NA	8248297	8300639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_8248880_8250341_8250452_8251266_8251434_8251820_8251892_8252554_8252635_8254822_8254901_8256396_8256578_8256769_8257052_8258073_8258815_8259698_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
ENSMUSG00000039801.8_28	chr15	+	3895	2	ISM	ENSMUSG00000039801.8	ENSMUST00000110617.2	10469	53	97275	2	19278	-2	3prime_fragment	FALSE	canonical	3	69	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTCCTTGCCCACAGTCT	NA	False	NA	6	True	AATAAA	-13	NA	8295864	8300640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_8299282_8300162
ENSMUSG00000039801.8_29	chr15	+	430	1	ISM	ENSMUSG00000039801.8	ENSMUST00000110617.2	10469	53	101622	1	23625	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTTGCCCACAGTCTG	NA	False	NA	7	True	AATAAA	-14	NA	8300211	8300641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_8300200_8300600
ENSMUSG00000039801.8_4	chr15	+	4541	22	ISM	ENSMUSG00000039801.8	ENSMUST00000110617.2	10469	53	-49	60871	-49	7681	5prime_fragment	FALSE	canonical	3	15	junction_2	6.49227693986829	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAACAAATTGTGACA	NA	False	NA	NA	False	ATTAAA	-9	NA	8198540	8239771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_8198974_8199789_8199879_8201176_8201306_8204209_8204346_8204440_8204561_8205602_8205836_8207820_8207928_8209241_8209399_8210362_8210467_8211599_8211783_8215566_8215817_8215982_8216136_8216307_8217063_8217870_8218080_8218280_8218362_8223807_8223973_8228664_8228824_8230617_8230847_8231677_8231818_8232744_8232963_8233156_8233322_8239445
ENSMUSG00000039801.8_56	chr15	+	3314	20	ISM	ENSMUSG00000039801.8	ENSMUST00000110617.2	10469	53	59798	2	5761	-2	3prime_fragment	FALSE	canonical	3	29	junction_11	11.0789161144702	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTCCTTGCCCACAGTCT	NA	False	NA	6	True	AATAAA	-13	NA	8258387	8300640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_8258815_8259698_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
ENSMUSG00000039801.8_77	chr15	+	2776	19	ISM	ENSMUSG00000039801.8	ENSMUST00000110617.2	10469	53	61218	4	7181	-4	3prime_fragment	FALSE	canonical	3	29	junction_10	10.6413182604876	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTTCCTTGCCCACAGT	NA	False	NA	4	True	AATAAA	-11	NA	8259807	8300638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
ENSMUSG00000039804.16_0	chr2	-	2826	6	ISM	ENSMUSG00000039804.16	ENSMUST00000040381.15	3179	8	21801	5	-8403	1	3prime_fragment	FALSE	canonical	3	73	junction_1	20.9227149289952	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACCTGTGCTAATCTTT	31	True	NA	-11	True	ATTAAA	-10	NA	164854986	164842281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755
ENSMUSG00000039804.16_1	chr2	-	4118	7	NIC	ENSMUSG00000039804.16	novel	3179	8	NA	NA	-3	-1	intron_retention	TRUE	canonical	3	73	junction_1	20.1246117974981	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTGCTAATCTTTCTTG	3043	False	NA	-7	True	ATTAAA	-14	NA	164876726	164842277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242_164852508_164854755_164855083_164865065_164865133_164876602
ENSMUSG00000039804.16_12	chr2	-	2005	2	ISM	ENSMUSG00000039804.16	ENSMUST00000121377.8	2930	6	31978	8	1824	-5	3prime_fragment	FALSE	canonical	3	73	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTCAGACCTGTGCTA	9652	False	NA	-17	True	ATTAAA	-4	NA	164844759	164842287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_164844092_164844558
ENSMUSG00000039804.16_15	chr2	-	2763	4	ISM	ENSMUSG00000039804.16	ENSMUST00000040381.15	3179	8	25107	11	-5097	-5	3prime_fragment	FALSE	canonical	3	73	junction_1	18.8561808316413	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTCAGACCTGTGCTA	8130	False	NA	-17	True	ATTAAA	-4	NA	164851680	164842287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242
ENSMUSG00000039804.16_2	chr2	-	3113	8	FSM	ENSMUSG00000039804.16	ENSMUST00000040381.15	3179	8	61	5	-3	1	multi-exon	FALSE	canonical	3	73	junction_1	19.1790702249582	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACCTGTGCTAATCTTT	3043	False	NA	-11	True	ATTAAA	-10	NA	164876726	164842281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164865065_164865133_164876602
ENSMUSG00000039804.16_3	chr2	-	3130	8	FSM	ENSMUSG00000039804.16	ENSMUST00000122070.2	3117	8	-18	5	-3	-5	multi-exon	FALSE	canonical	3	14	junction_1	35.3784207259344	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTCAGACCTGTGCTA	3043	False	NA	-17	True	ATTAAA	-4	NA	164876726	164842287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_164844092_164844535_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164865065_164865133_164876602
ENSMUSG00000039804.16_6	chr2	-	1387	1	ISM	ENSMUSG00000039804.16	ENSMUST00000040381.15	3179	8	33113	11	2909	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTCAGACCTGTGCTA	7896	False	NA	-17	True	ATTAAA	-4	NA	164843674	164842287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_164842300_164843700
ENSMUSG00000039804.16_7	chr2	-	3048	7	NIC	ENSMUSG00000039804.16	novel	3179	8	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_6	41.2812171439856	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTGTGCTAATCTTTCT	3043	False	NA	-9	True	ATTAAA	-12	NA	164876726	164842279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164876602
ENSMUSG00000039810.12_1	chr10	-	2089	3	FSM	ENSMUSG00000039810.12	ENSMUST00000040572.10	3721	3	25	1607	-6	1228	multi-exon	FALSE	canonical	3	75	junction_2	17	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAGTGAAAATTTCTT	NA	False	NA	-15	True	AATAAA	-16	NA	128383618	128379438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128381408_128382696_128382761_128383562
ENSMUSG00000039810.12_2	chr10	-	1157	1	ISM	ENSMUSG00000039810.12	ENSMUST00000040572.10	3721	3	3048	1607	2913	1228	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAGTGAAAATTTCTT	NA	False	NA	-15	True	AATAAA	-16	NA	128380595	128379438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128379400_128380600
ENSMUSG00000039810.12_3	chr10	-	2294	3	FSM	ENSMUSG00000039810.12	ENSMUST00000152539.8	992	3	208	-1510	208	1228	multi-exon	FALSE	canonical	3	17	junction_2	46	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAGTGAAAATTTCTT	NA	False	NA	-15	True	AATAAA	-16	NA	128383300	128379438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128381408_128382696_128382761_128383039
ENSMUSG00000039810.12_5	chr10	-	2031	2	ISM	ENSMUSG00000039810.12	ENSMUST00000152539.8	992	3	750	-1510	750	1228	3prime_fragment	FALSE	canonical	3	109	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAGTGAAAATTTCTT	NA	False	NA	-15	True	AATAAA	-16	NA	128382758	128379438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128381408_128382696
ENSMUSG00000039813.15_0	chr4	-	4219	13	FSM	ENSMUSG00000039813.15	ENSMUST00000084621.12	4315	13	73	23	73	-23	multi-exon	FALSE	canonical	2	8	junction_12	4.63381292481928	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAATAAATAAGAGAAAAA	59	False	NA	-22	True	NA	NA	NA	46650136	46604412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_46605969_46606382_46606505_46606969_46607156_46608982_46609104_46613947_46614425_46615026_46615209_46616253_46616365_46620446_46620822_46628340_46628538_46629875_46630010_46637588_46637737_46646116_46646259_46649668
ENSMUSG00000039813.15_1	chr4	-	4215	13	NNC	ENSMUSG00000039813.15	novel	4315	13	NA	NA	90	-13	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	6.7618209250336	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGAAAAACGATGAGTGT	-6	True	NA	-12	True	AATAAA	-2	NA	46650119	46604402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_46605969_46606382_46606505_46606969_46607156_46608982_46609104_46613947_46614425_46615026_46615209_46616253_46616365_46620446_46620822_46628340_46628541_46629875_46630010_46637588_46637737_46646116_46646259_46649668
ENSMUSG00000039813.15_5	chr4	-	4024	12	NIC	ENSMUSG00000039813.15	novel	4315	13	NA	NA	128	-21	combination_of_known_splicesites	FALSE	canonical	1	1	junction_11	6.26679561440512	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAGAGAAAAACG	114	False	NA	-20	True	NA	NA	NA	46650081	46604410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_46605969_46606382_46606505_46606969_46607156_46608982_46609104_46613947_46614425_46615026_46615209_46616253_46616365_46620446_46620822_46628340_46628538_46629875_46630010_46637588_46637737_46649668
ENSMUSG00000039814.16_1	chr8	-	2818	7	FSM	ENSMUSG00000039814.16	ENSMUST00000095438.10	2838	7	17	3	15	0	multi-exon	FALSE	canonical	2	24	junction_4	7.05730511991338	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCATTAGTGTTAGTAT	NA	False	NA	-6	True	NA	NA	NA	19000974	18982747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_18984622_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000891
ENSMUSG00000039814.16_12	chr8	-	2928	7	NNC	ENSMUSG00000039814.16	novel	3116	7	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	13.7204227340122	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCATTAGTGTTAGTAT	NA	False	NA	-6	True	NA	NA	NA	19000977	18982747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_18984622_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000784
ENSMUSG00000039814.16_2	chr8	-	1552	1	ISM	ENSMUSG00000039814.16	ENSMUST00000144987.8	3911	7	16590	1	16590	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCATTAGTGTTAGTATCT	6756	False	NA	-4	True	NA	NA	NA	18984297	18982745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_18982700_18984300
ENSMUSG00000039814.16_4	chr8	-	5436	6	NIC	ENSMUSG00000039814.16	novel	2838	7	NA	NA	-18	0	intron_retention	FALSE	canonical	2	24	junction_3	7.30479294709987	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCATTAGTGTTAGTAT	NA	False	NA	-6	True	NA	NA	NA	19000971	18982747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000891
ENSMUSG00000039814.16_5	chr8	-	3155	7	FSM	ENSMUSG00000039814.16	ENSMUST00000055503.12	3176	7	18	3	-18	0	multi-exon	TRUE	canonical	1	1	junction_6	13.3998341614945	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCATTAGTGTTAGTAT	NA	False	NA	-6	True	NA	NA	NA	19000971	18982747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_18984622_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000551
ENSMUSG00000039814.16_6	chr8	-	5137	4	NIC	ENSMUSG00000039814.16	novel	3911	7	NA	NA	8779	-1	intron_retention	FALSE	canonical	2	24	junction_3	7.40870359029762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCATTAGTGTTAGTATCT	NA	False	NA	-4	True	NA	NA	NA	18992108	18982745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_18987355_18989083_18989254_18990628_18990839_18991960
ENSMUSG00000039826.14_12	chr2	-	3328	7	NIC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	0	-1	intron_retention	FALSE	canonical	3	126	junction_1	24.0791518861349	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGGCATGTGATGTTTT	NA	False	NA	-7	True	TATAAA	-22	NA	29677660	29666122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ENSMUSG00000039826.14_2	chr2	-	2364	10	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	4	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	69.5021093915612	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGGCATGTGATGTTTT	NA	False	NA	-7	True	TATAAA	-22	NA	29677668	29666122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_29666232_29666386_29666544_29666585_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ENSMUSG00000039826.14_4	chr2	-	2496	7	FSM	ENSMUSG00000039826.14	ENSMUST00000156846.8	3930	7	7	1427	-5	-1	multi-exon	FALSE	canonical	3	76	junction_4	39.677869566464	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGGCATGTGATGTTTT	NA	False	NA	-7	True	TATAAA	-22	NA	29677665	29666122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
ENSMUSG00000039826.14_5	chr2	-	2556	8	FSM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	850	2	-4	-2	multi-exon	FALSE	canonical	3	126	junction_2	23.9267589931935	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAAGGCATGTGATGTTT	NA	False	NA	-8	True	TATAAA	-21	NA	29677664	29666123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ENSMUSG00000039826.14_8	chr2	-	1133	1	ISM	ENSMUSG00000039826.14	ENSMUST00000156846.8	3930	7	10417	1427	4953	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGGCATGTGATGTTTT	NA	False	NA	-7	True	TATAAA	-22	NA	29667255	29666122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_29666100_29667300
ENSMUSG00000039828.8_0	chr15	-	2120	18	FSM	ENSMUSG00000039828.8	ENSMUST00000045766.8	2126	18	4	2	4	-2	multi-exon	TRUE	canonical	3	158	junction_1	88.3053055575902	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACAGATTTTGTCCTTT	NA	False	NA	-8	True	AATAAA	-12	NA	8128671	7902544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7951635_7953688_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108849_8111945_8112067_8123159_8123244_8128439_8128506_8128602
ENSMUSG00000039828.8_25	chr15	-	1651	4	FSM	ENSMUSG00000039828.8	ENSMUST00000227371.2	1130	4	23	-544	5	544	multi-exon	FALSE	canonical	3	289	junction_1	79.3823378060608	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCTCTCTGATTATTTT	NA	False	NA	-25	True	NA	NA	NA	8128670	8121166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_8122600_8123159_8123244_8128439_8128506_8128602
ENSMUSG00000039831.17_0	chr3	+	4940	22	NIC	ENSMUSG00000039831.17	novel	5787	23	NA	NA	7	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	4.69331555346045	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATTTCAGGTTCTTAT	NA	False	NA	22	True	GATAAA	-23	NA	121746885	121809800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_121747054_121775463_121775599_121782137_121782235_121782560_121782634_121783957_121784007_121784633_121784772_121785510_121785576_121785982_121786094_121786181_121786263_121786390_121786580_121787228_121787367_121796190_121796352_121796857_121796998_121797893_121797999_121799303_121799403_121800424_121800565_121801192_121801382_121801602_121801741_121803474_121803708_121804898_121805230_121805713_121805823_121807749
ENSMUSG00000039831.17_1	chr3	+	5177	23	FSM	ENSMUSG00000039831.17	ENSMUST00000037958.14	5787	23	8	602	7	-3	multi-exon	TRUE	canonical	2	6	junction_1	3.88922010920586	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATTTCAGGTTCTTAT	NA	False	NA	22	True	GATAAA	-23	NA	121746885	121809800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_121747054_121767527_121767765_121775463_121775599_121782137_121782235_121782560_121782634_121783957_121784007_121784633_121784772_121785510_121785576_121785982_121786094_121786181_121786263_121786390_121786580_121787228_121787367_121796190_121796352_121796857_121796998_121797893_121797999_121799303_121799403_121800424_121800565_121801192_121801382_121801602_121801741_121803474_121803708_121804898_121805230_121805713_121805823_121807749
ENSMUSG00000039831.17_2	chr3	+	5126	23	NIC	ENSMUSG00000039831.17	novel	2503	20	NA	NA	5	-10	combination_of_known_junctions	FALSE	canonical	2	9	junction_3	3.57707346100895	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCTTAAATTATTTCAGG	NA	False	NA	15	True	GATAAA	-16	NA	121761482	121809793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_121761607_121767527_121767765_121775463_121775599_121782137_121782235_121782560_121782634_121783957_121784007_121784633_121784772_121785510_121785576_121785982_121786094_121786181_121786263_121786390_121786580_121787228_121787367_121796190_121796352_121796857_121796998_121797893_121797999_121799303_121799403_121800424_121800565_121801192_121801382_121801602_121801741_121803474_121803708_121804898_121805230_121805713_121805823_121807749
ENSMUSG00000039831.17_5	chr3	+	3190	7	ISM	ENSMUSG00000039831.17	ENSMUST00000198914.2	3758	12	13143	5	3786	-5	3prime_fragment	FALSE	canonical	3	11	junction_5	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTATTTCAGGTTCTT	NA	False	NA	20	True	GATAAA	-21	NA	121800423	121809798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_121800565_121801192_121801382_121801602_121801741_121803474_121803708_121804898_121805230_121805713_121805823_121807749
ENSMUSG00000039834.18_13	chr2	-	4416	28	FSM	ENSMUSG00000039834.18	ENSMUST00000041361.14	4587	28	160	11	160	-11	multi-exon	FALSE	canonical	3	65	junction_13	19.1818958999235	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTTGCAACTCTCTTTG	NA	False	NA	-11	True	AATAAA	-14	NA	164753517	164733812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_164734212_164734299_164734382_164734460_164734527_164734606_164734691_164734797_164734873_164735165_164735270_164735392_164735536_164735620_164735764_164736444_164736820_164736897_164737010_164737907_164738168_164739908_164740004_164740103_164740198_164741176_164741407_164741790_164741952_164742030_164742108_164742197_164742315_164742420_164742440_164743337_164743451_164744127_164744306_164744415_164744657_164746760_164746908_164749347_164749495_164749572_164749879_164750074_164750153_164751125_164751364_164752541_164752793_164753436
ENSMUSG00000039834.18_7	chr2	-	4449	27	ISM	ENSMUSG00000039834.18	ENSMUST00000041361.14	4587	28	771	11	771	-11	3prime_fragment	TRUE	canonical	3	65	junction_13	19.3627776871841	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTTGCAACTCTCTTTG	NA	False	NA	-11	True	AATAAA	-14	NA	164752906	164733812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_164734212_164734299_164734382_164734460_164734527_164734606_164734691_164734797_164734873_164735165_164735270_164735392_164735536_164735620_164735764_164736444_164736820_164736897_164737010_164737907_164738168_164739908_164740004_164740103_164740198_164741176_164741407_164741790_164741952_164742030_164742108_164742197_164742315_164742420_164742440_164743337_164743451_164744127_164744306_164744415_164744657_164746760_164746908_164749347_164749495_164749572_164749879_164750074_164750153_164751125_164751364_164752541
ENSMUSG00000039834.18_8	chr2	-	4490	27	NIC	ENSMUSG00000039834.18	novel	4587	28	NA	NA	164	-11	intron_retention	FALSE	canonical	3	65	junction_13	19.3627776871841	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTTGCAACTCTCTTTG	NA	False	NA	-11	True	AATAAA	-14	NA	164753513	164733812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_164734212_164734299_164734382_164734460_164734527_164734606_164734691_164734797_164734873_164735165_164735270_164735392_164735536_164735620_164735764_164736444_164736820_164736897_164737010_164737907_164738168_164739908_164740004_164740103_164740198_164741176_164741407_164741790_164741952_164742030_164742108_164742197_164742315_164742420_164742440_164743337_164743451_164744127_164744306_164744415_164744657_164746760_164746908_164749347_164749879_164750074_164750153_164751125_164751364_164752541_164752793_164753436
ENSMUSG00000039835.17_10	chr10	+	2695	2	ISM	ENSMUSG00000039835.17	ENSMUST00000100054.4	6795	8	57607	8	57607	-8	3prime_fragment	FALSE	canonical	3	31	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTGAAACTTCTTTGT	NA	False	NA	11	True	AATAAA	-15	NA	18403335	18409629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_18403417_18407015
ENSMUSG00000039835.17_11	chr10	+	1749	1	ISM	ENSMUSG00000039835.17	ENSMUST00000037341.14	7321	7	124457	12	62151	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATTTGAAACTTCTTTG	34	False	NA	10	True	AATAAA	-14	NA	18407879	18409628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_18407900_18409600
ENSMUSG00000039835.17_2	chr10	+	7312	8	NIC	ENSMUSG00000039835.17	novel	4854	7	NA	NA	-419	-9	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	8.8456146173787	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATTTGAAACTTCTTTG	NA	False	NA	10	True	AATAAA	-14	NA	18194313	18409628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_18195025_18348666_18348820_18373780_18373906_18387297_18387491_18391776_18391909_18399538_18402791_18403283_18403417_18407015
ENSMUSG00000039835.17_3	chr10	+	7213	7	FSM	ENSMUSG00000039835.17	ENSMUST00000207038.2	4854	7	-457	-1902	-457	-14	multi-exon	FALSE	canonical	2	10	junction_1	9.68532681717842	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCAATATTTGAAACTT	NA	False	NA	5	True	AATAAA	-9	NA	18194275	18409623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_18195025_18348666_18348820_18373780_18373906_18387297_18387491_18399538_18402791_18403283_18403417_18407015
ENSMUSG00000039835.17_7	chr10	+	7447	8	NIC	ENSMUSG00000039835.17	novel	7321	7	NA	NA	-5	-8	intron_retention	FALSE	canonical	2	6	junction_1	9.66584561373558	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTGAAACTTCTTTGT	NA	False	NA	11	True	AATAAA	-15	NA	18283417	18409629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_18284263_18348666_18348820_18373780_18373906_18387297_18387491_18391776_18391909_18399538_18402791_18403283_18403417_18407015
ENSMUSG00000039835.17_9	chr10	+	4692	3	ISM	ENSMUSG00000039835.17	ENSMUST00000100054.4	6795	8	55117	8	55117	-8	3prime_fragment	FALSE	canonical	3	19	junction_1	6	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTGAAACTTCTTTGT	NA	False	NA	11	True	AATAAA	-15	NA	18400845	18409629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_18402791_18403283_18403417_18407015
ENSMUSG00000039838.12_1	chr4	-	2484	8	ISM	ENSMUSG00000039838.12	ENSMUST00000037827.10	3387	9	7736	825	-349	650	3prime_fragment	FALSE	canonical	0	0	junction_5	1.29362644830535	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGGGTTCGAGGTCAT	NA	False	NA	NA	False	AATAAA	-17	NA	150728895	150713853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_150714255_150715374_150715581_150717769_150717947_150719343_150719498_150722430_150723168_150726902_150727128_150727745_150727839_150728404
ENSMUSG00000039838.12_2	chr4	-	2528	9	FSM	ENSMUSG00000039838.12	ENSMUST00000037827.10	3387	9	33	826	33	649	multi-exon	FALSE	canonical	0	0	junction_5	1.31695671910659	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCAAGGGTTCGAGGTCA	NA	False	NA	NA	False	AATAAA	-16	NA	150736598	150713854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_150714255_150715374_150715581_150717769_150717947_150719343_150719498_150722430_150723168_150726902_150727128_150727745_150727839_150728404_150728826_150736483
ENSMUSG00000039840.9_0	chr18	+	9685	44	FSM	ENSMUSG00000039840.9	ENSMUST00000044622.7	9660	44	-27	2	-27	-2	multi-exon	FALSE	canonical	2	14	junction_24	5.20286146671814	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGATGAATCCGAATTGA	NA	False	NA	NA	False	AATAAA	-17	NA	77981652	78078226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_77981775_77991364_77992298_77994363_77994608_77997375_77997513_77997947_77998056_77999121_77999196_78000621_78000728_78002244_78002360_78002694_78002846_78003921_78004078_78005595_78005754_78008115_78008271_78011751_78011893_78015709_78015875_78018193_78018314_78019051_78019309_78022338_78022480_78024155_78024301_78024512_78024711_78025522_78025634_78026685_78026806_78028255_78028423_78029600_78029823_78031478_78031603_78034560_78034706_78038726_78038899_78040421_78040585_78052784_78052928_78054048_78054206_78055915_78056111_78057205_78057420_78057953_78058103_78058893_78059096_78060866_78060940_78062429_78062537_78063952_78064129_78065865_78066052_78066491_78066702_78067140_78067286_78070471_78070715_78071977_78072195_78073183_78073400_78073555_78073671_78076139
ENSMUSG00000039840.9_10	chr18	+	3185	7	ISM	ENSMUSG00000039840.9	ENSMUST00000044622.7	9660	44	84859	3	-6865	-3	3prime_fragment	FALSE	canonical	3	21	junction_2	2.03442593595562	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGATGAATCCGAATTG	3707	False	NA	NA	False	AATAAA	-16	NA	78066538	78078225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_78066702_78067140_78067286_78070471_78070715_78071977_78072195_78073183_78073400_78073555_78073671_78076139
ENSMUSG00000039840.9_11	chr18	+	2488	4	ISM	ENSMUSG00000039840.9	ENSMUST00000044622.7	9660	44	90445	2	-1279	-2	3prime_fragment	FALSE	canonical	3	21	junction_1	2.35702260395516	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGATGAATCCGAATTGA	9293	False	NA	NA	False	AATAAA	-17	NA	78072124	78078226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_78072195_78073183_78073400_78073555_78073671_78076139
ENSMUSG00000039840.9_7	chr18	+	4943	18	ISM	ENSMUSG00000039840.9	ENSMUST00000044622.7	9660	44	58797	2	-32927	-2	3prime_fragment	FALSE	canonical	3	20	junction_2	5.60400252414802	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGATGAATCCGAATTGA	NA	False	NA	NA	False	AATAAA	-17	NA	78040476	78078226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_78040585_78052784_78052928_78054048_78054206_78055915_78056111_78057205_78057420_78057953_78058103_78058893_78059096_78060866_78060940_78062429_78062537_78063952_78064129_78065865_78066052_78066491_78066702_78067140_78067286_78070471_78070715_78071977_78072195_78073183_78073400_78073555_78073671_78076139
ENSMUSG00000039840.9_8	chr18	+	4538	15	ISM	ENSMUSG00000039840.9	ENSMUST00000044622.7	9660	44	74233	2	-17491	-2	3prime_fragment	FALSE	canonical	3	21	junction_3	5.91133466748588	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGATGAATCCGAATTGA	NA	False	NA	NA	False	AATAAA	-17	NA	78055912	78078226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_78056111_78057205_78057420_78057953_78058103_78058893_78059096_78060866_78060940_78062429_78062537_78063952_78064129_78065865_78066052_78066491_78066702_78067140_78067286_78070471_78070715_78071977_78072195_78073183_78073400_78073555_78073671_78076139
ENSMUSG00000039841.15_0	chr6	-	5369	6	Fusion	ENSMUSG00000039841.15_ENSMUSG00000106990.2	novel	703	5	NA	NA	-1	-1481	multi-exon	FALSE	canonical	3	14	junction_1	14.5958898324152	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGGTTTCTGGATTTGTTA	-7	True	NA	NA	False	ATTAAA	-15	NA	28261932	28212487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr6_-_28215645_28242975_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261766
ENSMUSG00000039841.15_12	chr6	-	2943	5	FSM	ENSMUSG00000039841.15	ENSMUST00000155494.2	703	5	9	-2249	0	-787	multi-exon	FALSE	canonical	3	22	junction_4	12.1937483982572	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAGTTAGTATTATTCA	3	True	NA	NA	False	AATAAA	-19	NA	28261922	28242234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261766
ENSMUSG00000039841.15_15	chr6	-	3396	5	FSM	ENSMUSG00000039841.15	ENSMUST00000123098.8	2084	5	10	-1322	7	-787	multi-exon	FALSE	canonical	0	0	junction_4	20.4496332485451	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAGTTAGTATTATTCA	770	False	NA	NA	False	AATAAA	-19	NA	28261903	28242234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261294
ENSMUSG00000039841.15_17	chr6	-	3240	5	ISM	ENSMUSG00000039841.15	ENSMUST00000115321.9	2699	6	-9	787	0	-787	5prime_fragment	FALSE	canonical	3	13	junction_4	15.3948043183407	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAGTTAGTATTATTCA	-6	True	NA	NA	False	AATAAA	-19	NA	28261931	28242234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261478
ENSMUSG00000039841.15_3	chr6	-	4215	6	FSM	ENSMUSG00000039841.15	ENSMUST00000115321.9	2699	6	1	-1517	1	-5	multi-exon	FALSE	canonical	3	13	junction_5	13.7927517196533	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAGGTGTTATCTTTTTG	4	True	NA	-6	True	ATTAAA	-18	NA	28261921	28239930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_28241657_28242975_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261478
ENSMUSG00000039841.15_4	chr6	-	4312	6	FSM	ENSMUSG00000039841.15	ENSMUST00000115320.8	4311	6	-11	10	1	-10	multi-exon	FALSE	canonical	2	3	junction_5	17.2232401132888	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTCAAGGTGTTATCT	4	True	NA	-11	True	ATTAAA	-13	NA	28261921	28239935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_28241657_28242975_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261376
ENSMUSG00000039841.15_6	chr6	-	4063	6	NIC	ENSMUSG00000039841.15	novel	4311	6	NA	NA	322	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	18.2975408183723	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCAAGGTGTTATCTTT	1085	False	NA	-9	True	ATTAAA	-15	NA	28261588	28239933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_28241657_28242975_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261294
ENSMUSG00000039841.15_7	chr6	-	3621	6	NIC	ENSMUSG00000039841.15	novel	3881	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	11.0381157812373	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGCTAAATGTGCTTC	2	True	NA	NA	False	AATAAA	-15	NA	28261923	28240238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_28241657_28242975_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261766
ENSMUSG00000039841.15_9	chr6	-	2193	1	NIC	ENSMUSG00000039841.15	novel	4311	6	NA	NA	19479	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGCTAAATGTGCTTC	4787	False	NA	NA	False	AATAAA	-15	NA	28242431	28240238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_28240200_28242400
ENSMUSG00000039842.16_1	chr8	+	4628	14	FSM	ENSMUSG00000039842.16	ENSMUST00000039412.15	4662	14	28	6	-5	-6	multi-exon	FALSE	canonical	3	150	junction_4	12.6528524276628	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAAGAGAAGCAATAATT	NA	False	NA	NA	False	AATAAA	-11	NA	18645174	18853199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18838254_18838493_18851421
ENSMUSG00000039842.16_2	chr8	+	3487	13	NIC	ENSMUSG00000039842.16	novel	4662	14	NA	NA	8	-6	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	47.3133760743783	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAAGAGAAGCAATAATT	NA	False	NA	NA	False	AATAAA	-11	NA	18645187	18853199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18838254_18838493_18851421
ENSMUSG00000039842.16_3	chr8	+	2491	8	FSM	ENSMUSG00000039842.16	ENSMUST00000146819.8	2067	8	-425	1	-7	-1	multi-exon	FALSE	canonical	3	150	junction_4	14.4391757354209	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGTTGACCTGTATAC	NA	False	NA	NA	False	ATTAAA	-21	NA	18645172	18682916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531
ENSMUSG00000039842.16_41	chr8	+	3072	7	ISM	ENSMUSG00000039842.16	ENSMUST00000039412.15	4662	14	36837	6	-624	-6	3prime_fragment	FALSE	canonical	3	156	junction_1	9.7581874455363	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAAGAGAAGCAATAATT	NA	False	NA	NA	False	AATAAA	-11	NA	18681983	18853199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18838254_18838493_18851421
ENSMUSG00000039842.16_48	chr8	+	1233	1	ISM	ENSMUSG00000039842.16	ENSMUST00000039412.15	4662	14	206820	6	169359	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAAGAGAAGCAATAATT	5380	False	NA	NA	False	AATAAA	-11	NA	18851966	18853199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_18852000_18853200
ENSMUSG00000039842.16_6	chr8	+	4110	13	NIC	ENSMUSG00000039842.16	novel	4662	14	NA	NA	-21	-13	combination_of_known_junctions	FALSE	canonical	3	10	junction_4	45.9480382848084	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGCCCAGCAAAGAGAAGC	NA	False	NA	NA	False	AATAAA	-4	NA	18645570	18853192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18677133_18677257_18679561_18679652_18681531_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18838254_18838493_18851421
ENSMUSG00000039842.16_8	chr8	+	4392	13	NIC	ENSMUSG00000039842.16	novel	4662	14	NA	NA	-7	-6	combination_of_known_splicesites	FALSE	canonical	2	8	junction_12	46.4396262785231	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAAGAGAAGCAATAATT	NA	False	NA	NA	False	AATAAA	-11	NA	18645172	18853199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18851421
ENSMUSG00000039844.21_0	chr2	+	5790	24	FSM	ENSMUSG00000039844.21	ENSMUST00000102872.11	6402	24	-8	620	-8	-5	multi-exon	TRUE	canonical	3	225	junction_2	42.1435569818812	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCATGTCTGTGTCCAGG	NA	False	NA	12	True	AATAAA	-19	NA	29509773	29630370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29510076_29569144_29569282_29569748_29569863_29576116_29576296_29579118_29579276_29589008_29589098_29589697_29589851_29590197_29590319_29590679_29590864_29592204_29592691_29597209_29597413_29612235_29612322_29614784_29614897_29616217_29616294_29620539_29620625_29622838_29622932_29623588_29623775_29624211_29624297_29624436_29624532_29625813_29625893_29625995_29626098_29626583_29626682_29627338_29627468_29627931
ENSMUSG00000039844.21_1	chr2	+	5670	23	NIC	ENSMUSG00000039844.21	novel	6402	24	NA	NA	-2	-5	intron_retention	FALSE	canonical	3	94	junction_2	58.96679272801	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCATGTCTGTGTCCAGG	NA	False	NA	12	True	AATAAA	-19	NA	29509779	29630370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29510076_29569144_29569282_29576116_29576296_29579118_29579276_29589008_29589098_29589697_29589851_29590197_29590319_29590679_29590864_29592204_29592691_29597209_29597413_29612235_29612322_29614784_29614897_29616217_29616294_29620539_29620625_29622838_29622932_29623588_29623775_29624211_29624297_29624436_29624532_29625813_29625893_29625995_29626098_29626583_29626682_29627338_29627468_29627931
ENSMUSG00000039844.21_93	chr2	+	1530	1	ISM	ENSMUSG00000039844.21	ENSMUST00000091146.12	6212	26	119088	5	6268	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCATGTCTGTGTCCAGG	3774	False	NA	12	True	AATAAA	-19	NA	29628840	29630370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_29628800_29630400
ENSMUSG00000039849.7_0	chr2	+	493	2	FSM	ENSMUSG00000039849.7	ENSMUST00000145327.2	611	2	79	39	26	-39	multi-exon	FALSE	canonical	3	441	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCTATGATGTCGTTAAC	5975	False	NA	5	True	AATAAA	-15	NA	164721302	164725080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164721410_164724694
ENSMUSG00000039849.7_1	chr2	+	2676	17	FSM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	23	3081	23	-3081	multi-exon	FALSE	canonical	3	171	junction_4	60.7051017213545	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTGTGTGAGGGTCTTG	5972	False	NA	13	True	AATACA	-11	NA	164721299	164733293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164721410_164724694_164724865_164725996_164726140_164726224_164726350_164727278_164727417_164727595_164727724_164727827_164727983_164728414_164728563_164728643_164728728_164728978_164729079_164730270_164730434_164731013_164731187_164731305_164731393_164731473_164731659_164732334_164732429_164732518_164732695_164732796
ENSMUSG00000039850.17_0	chr11	+	3093	9	FSM	ENSMUSG00000039850.17	ENSMUST00000106244.9	5070	9	42	1935	0	-91	multi-exon	FALSE	canonical	3	23	junction_1	7.28010988928052	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACAGTGGAGTGTCTGGGG	6296	False	NA	4	True	ATTAAA	-15	NA	119382214	119400314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119382286_119382610_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
ENSMUSG00000039850.17_28	chr11	+	1858	1	ISM	ENSMUSG00000039850.17	ENSMUST00000106244.9	5070	9	16286	1933	5655	-89	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGGAGTGTCTGGGGAG	513	False	NA	6	True	ATTAAA	-17	NA	119398458	119400316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119398500_119400300
ENSMUSG00000039850.17_5	chr11	+	3158	8	FSM	ENSMUSG00000039850.17	ENSMUST00000106245.9	5126	8	21	1947	21	-89	multi-exon	FALSE	canonical	3	37	junction_3	3.65892813567591	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGGAGTGTCTGGGGAG	6558	False	NA	6	True	ATTAAA	-17	NA	119382476	119400316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
ENSMUSG00000039850.17_7	chr11	+	2649	5	ISM	ENSMUSG00000039850.17	ENSMUST00000143817.8	3101	9	9246	87	1110	-87	3prime_fragment	FALSE	canonical	3	40	junction_4	3.20156211871642	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGAGTGTCTGGGGAGCC	771	False	NA	8	True	ATTAAA	-19	NA	119391446	119400318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
ENSMUSG00000039850.17_8	chr11	+	176	1	ISM	ENSMUSG00000039850.17	ENSMUST00000106244.9	5070	9	19898	3	9267	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	4125	False	NA	NA	False	NA	NA	NA	119402070	119402246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119402100_119402200
ENSMUSG00000039852.18_0	chr4	+	7790	23	FSM	ENSMUSG00000039852.18	ENSMUST00000105682.9	7728	23	-68	6	-68	-2	multi-exon	FALSE	canonical	3	64	junction_3	25.3224249749421	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACCCTGTGTGTTGGC	NA	False	NA	13	True	AATAAA	-14	NA	150366034	150706417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_150366533_150490652_150491122_150515979_150516051_150523799_150523926_150553151_150553258_150554751_150554849_150561820_150561926_150584459_150584509_150593286_150593412_150594395_150594496_150619303_150619403_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701215_150701937_150702862_150703010_150703481_150703663_150703912
ENSMUSG00000039852.18_1	chr4	+	7810	23	NIC	ENSMUSG00000039852.18	novel	7728	23	NA	NA	-83	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_19	29.5377962102571	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACCCTGTGTGTTGGCCA	NA	False	NA	15	True	AATAAA	-16	NA	150366019	150706419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_150366533_150490652_150491122_150515979_150516051_150523799_150523926_150553151_150553258_150554751_150554849_150561820_150561926_150584459_150584509_150593286_150593412_150594395_150594496_150619303_150619403_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701212_150701937_150702862_150703010_150703481_150703663_150703912
ENSMUSG00000039852.18_29	chr4	+	6060	13	NIC	ENSMUSG00000039852.18	novel	496	5	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_9	37.0730322771448	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACCCTGTGTGTTGGCCA	NA	False	NA	15	True	AATAAA	-16	NA	150654033	150706419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_150654144_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701212_150701937_150702862_150703010_150703481_150703663_150703912
ENSMUSG00000039852.18_3	chr4	+	7657	22	NIC	ENSMUSG00000039852.18	novel	7728	23	NA	NA	-61	-2	combination_of_known_junctions	FALSE	canonical	3	51	junction_3	25.5941638755752	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACCCTGTGTGTTGGC	NA	False	NA	13	True	AATAAA	-14	NA	150366041	150706417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_150366533_150490652_150491122_150515979_150516051_150553151_150553258_150554751_150554849_150561820_150561926_150584459_150584509_150593286_150593412_150594395_150594496_150619303_150619403_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701215_150701937_150702862_150703010_150703481_150703663_150703912
ENSMUSG00000039852.18_30	chr4	+	6068	13	NIC	ENSMUSG00000039852.18	novel	496	5	NA	NA	-24	-2	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	28.7347785792757	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACCCTGTGTGTTGGC	NA	False	NA	13	True	AATAAA	-14	NA	150654020	150706417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_150654144_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701215_150701937_150702862_150703010_150703481_150703663_150703912
ENSMUSG00000039852.18_4	chr4	+	7656	22	NIC	ENSMUSG00000039852.18	novel	7728	23	NA	NA	-57	-2	combination_of_known_junctions	FALSE	canonical	3	37	junction_18	30.0910937471953	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACCCTGTGTGTTGGC	NA	False	NA	13	True	AATAAA	-14	NA	150366045	150706417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_150366533_150490652_150491122_150515979_150516051_150553151_150553258_150554751_150554849_150561820_150561926_150584459_150584509_150593286_150593412_150594395_150594496_150619303_150619403_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701212_150701937_150702862_150703010_150703481_150703663_150703912
ENSMUSG00000039852.18_48	chr4	+	4517	6	ISM	ENSMUSG00000039852.18	ENSMUST00000105680.9	6503	17	126699	2	-323	-2	3prime_fragment	FALSE	canonical	3	105	junction_2	23.1982757979984	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACCCTGTGTGTTGGC	NA	False	NA	13	True	AATAAA	-14	NA	150699548	150706417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_150700289_150700397_150700621_150701215_150701937_150702862_150703010_150703481_150703663_150703912
ENSMUSG00000039852.18_5	chr4	+	7816	23	NIC	ENSMUSG00000039852.18	novel	7728	23	NA	NA	-70	-2	combination_of_known_junctions	TRUE	canonical	3	13	junction_21	31.85300042953	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACCCTGTGTGTTGGC	NA	False	NA	13	True	AATAAA	-14	NA	150366032	150706417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_150366533_150490652_150491122_150515979_150516051_150523799_150523926_150553151_150553258_150554751_150554849_150561820_150561926_150584459_150584509_150593286_150593412_150594395_150594496_150619303_150619403_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701215_150701937_150702862_150703010_150703457_150703663_150703912
ENSMUSG00000039852.18_52	chr4	+	3656	5	ISM	ENSMUSG00000039852.18	ENSMUST00000105680.9	6503	17	127669	2	647	-2	3prime_fragment	FALSE	canonical	3	105	junction_1	22.588713996153	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACCCTGTGTGTTGGC	NA	False	NA	13	True	AATAAA	-14	NA	150700518	150706417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_150700621_150701215_150701937_150702862_150703010_150703481_150703663_150703912
ENSMUSG00000039852.18_56	chr4	+	3140	4	ISM	ENSMUSG00000039852.18	ENSMUST00000105680.9	6503	17	128780	2	-93	-2	3prime_fragment	FALSE	canonical	3	133	junction_2	13.4742552876052	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACCCTGTGTGTTGGC	NA	False	NA	13	True	AATAAA	-14	NA	150701629	150706417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_150701937_150702862_150703010_150703481_150703663_150703912
ENSMUSG00000039852.18_58	chr4	+	1754	1	ISM	ENSMUSG00000039852.18	ENSMUST00000105682.9	7728	23	338561	6	2941	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACCCTGTGTGTTGGC	NA	False	NA	13	True	AATAAA	-14	NA	150704663	150706417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_150704700_150706400
ENSMUSG00000039865.9_1	chr3	-	2490	15	FSM	ENSMUSG00000039865.9	ENSMUST00000039197.9	2620	15	128	2	128	-2	multi-exon	FALSE	canonical	2	7	junction_10	3.70672307009404	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTTGTTTGTTCATCTT	NA	False	NA	NA	False	AATAAA	-18	NA	121325925	121253178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_121253726_121254750_121254988_121257062_121257201_121279910_121279998_121283846_121284004_121291367_121291534_121303022_121303210_121303840_121303966_121305970_121306061_121307305_121307467_121318475_121318570_121319315_121319453_121320712_121320856_121325315_121325421_121325809
ENSMUSG00000039873.5_0	chr2	-	666	2	FSM	ENSMUSG00000039873.5	ENSMUST00000042775.5	1014	2	339	9	339	-9	multi-exon	FALSE	canonical	3	37	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCTGAGCATTGGAGGG	NA	False	NA	NA	False	AATAAA	-15	NA	164675037	164672660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_164672908_164674618
ENSMUSG00000039879.10_0	chr10	-	5052	4	FSM	ENSMUSG00000039879.10	ENSMUST00000037879.8	5098	4	30	16	30	-9	multi-exon	FALSE	canonical	3	53	junction_3	19.3045763140937	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAAATATTAAACTTT	NA	False	NA	-27	True	AATAAA	-6	NA	17823785	17774798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_17778126_17783781_17783937_17790739_17791781_17823256
ENSMUSG00000039879.10_18	chr10	-	4498	2	ISM	ENSMUSG00000039879.10	ENSMUST00000037879.8	5098	4	31	13028	31	-9777	5prime_fragment	FALSE	canonical	3	53	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCATTTAATGGAAGTATG	NA	False	NA	NA	False	NA	NA	NA	17823784	17787810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_17791781_17823256
ENSMUSG00000039879.10_2	chr10	-	2678	1	ISM	ENSMUSG00000039879.10	ENSMUST00000037879.8	5098	4	46341	14	6575	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAATATTAAACTTTGC	NA	False	NA	-25	True	AATAAA	-8	NA	17777474	17774796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_17774800_17777500
ENSMUSG00000039879.10_3	chr10	-	4305	3	ISM	ENSMUSG00000039879.10	ENSMUST00000037879.8	5098	4	32255	14	-590	-7	3prime_fragment	FALSE	canonical	3	90	junction_1	3.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAATATTAAACTTTGC	7880	False	NA	-25	True	AATAAA	-8	NA	17791560	17774796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_17778126_17783781_17783937_17790739
ENSMUSG00000039886.9_0	chr5	-	1337	12	FSM	ENSMUSG00000039886.9	ENSMUST00000043378.9	1559	12	217	5	-23	-5	multi-exon	FALSE	canonical	3	674	junction_10	35.0345756018723	522	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATCTGATGGACTGTGG	5280	False	NA	-9	True	AATAAA	-16	NA	135773085	135764343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765201_135765294_135765357_135765450_135765517_135765599_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134_135771254_135772901
ENSMUSG00000039887.12_1	chr3	+	1906	4	FSM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	-16	147	-16	-147	multi-exon	FALSE	canonical	3	72	junction_1	14.5143607047182	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTATTGGTCAGGAATC	NA	False	NA	-3	True	AATAAA	-6	NA	121085405	121156596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_121085633_121092252_121092408_121113728_121113861_121155204
ENSMUSG00000039887.12_5	chr3	+	910	1	ISM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	70406	6	70289	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGAATGCCAGGTATTT	NA	False	NA	NA	False	NA	NA	NA	121155827	121156737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_121155800_121156700
ENSMUSG00000039891.7_2	chr10	+	2512	10	FSM	ENSMUSG00000039891.7	ENSMUST00000037964.7	4422	10	44	1866	44	-1866	multi-exon	FALSE	canonical	1	5	junction_4	2.43938871112224	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCACAAATAACCCAATAAGA	NA	False	NA	NA	False	AATAAA	-25	NA	17672047	17719547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_17672170_17674835_17675282_17682512_17682605_17690976_17691148_17703539_17703735_17705983_17706104_17709025_17709101_17714655_17714749_17717173_17717270_17718445
ENSMUSG00000039891.7_3	chr10	+	4114	9	ISM	ENSMUSG00000039891.7	ENSMUST00000037964.7	4422	10	2971	3	2971	-3	3prime_fragment	FALSE	canonical	1	5	junction_3	2.58602010819715	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTTTTCTAGTAGGTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	17674974	17721410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_17675282_17682512_17682605_17690976_17691148_17703539_17703735_17705983_17706104_17709025_17709101_17714655_17714749_17717173_17717270_17718445
ENSMUSG00000039891.7_7	chr10	+	4203	9	NIC	ENSMUSG00000039891.7	novel	4422	10	NA	NA	22	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	3.59687364248454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTCTAGTAGGTTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	17672025	17721411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_17672170_17674835_17675282_17682512_17682605_17690976_17691148_17705983_17706104_17709025_17709101_17714655_17714749_17717173_17717270_17718445
ENSMUSG00000039899.6_0	chr5	+	3724	2	FSM	ENSMUSG00000039899.6	ENSMUST00000035799.6	3788	2	48	16	48	-16	multi-exon	FALSE	canonical	3	6	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATCTTTATATCTATCCT	NA	False	NA	NA	False	AATAAA	-3	NA	21577687	21583356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_21578307_21580251
ENSMUSG00000039901.11_1	chr19	-	3720	26	FSM	ENSMUSG00000039901.11	ENSMUST00000045396.9	3676	26	-46	2	-46	-2	multi-exon	FALSE	canonical	3	159	junction_20	17.3221707646588	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTAGTGTCTCGTTAGTG	6601	False	NA	-5	True	ATTAAA	-15	NA	45986973	45805804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
ENSMUSG00000039901.11_2	chr19	-	3776	26	NNC	ENSMUSG00000039901.11	novel	3676	26	NA	NA	4935	-2	at_least_one_novel_splicesite	TRUE	canonical	3	28	junction_25	35.5729335309867	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTAGTGTCTCGTTAGTG	NA	False	NA	-5	True	ATTAAA	-15	NA	45981992	45805804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45981817
ENSMUSG00000039903.19_0	chr16	+	1671	8	FSM	ENSMUSG00000039903.19	ENSMUST00000037539.15	2142	8	267	204	13	-14	multi-exon	FALSE	canonical	2	6	junction_2	3.62530786869986	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGTCTTGCAATCCTAT	NA	False	NA	NA	False	AATAAA	-14	NA	90628013	90701569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_90628321_90663142_90663340_90666453_90666578_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
ENSMUSG00000039908.15_0	chr11	+	2624	17	NNC	ENSMUSG00000039908.15	novel	2695	17	NA	NA	-14	-28	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	13.6358901432946	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTATTAAAATACAAGATTT	NA	False	NA	NA	False	ATTAAA	-17	NA	119246399	119271847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_119246466_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
ENSMUSG00000039908.15_1	chr11	+	2615	17	FSM	ENSMUSG00000039908.15	ENSMUST00000050880.8	2695	17	25	55	-6	-25	multi-exon	FALSE	canonical	3	19	junction_1	16.3122605346408	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAATACAAGATTTATT	NA	False	NA	NA	False	ATTAAA	-20	NA	119246407	119271850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119246462_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
ENSMUSG00000039908.15_17	chr11	+	2557	16	ISM	ENSMUSG00000039908.15	ENSMUST00000050880.8	2695	17	1250	60	1214	-30	3prime_fragment	FALSE	canonical	3	47	junction_10	11.6359595889448	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTTATTAAAATACAAGAT	NA	False	NA	NA	False	ATTAAA	-15	NA	119247632	119271845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
ENSMUSG00000039910.11_0	chr10	+	1943	2	FSM	ENSMUSG00000039910.11	ENSMUST00000038107.9	1979	2	8	28	-7	3	multi-exon	FALSE	canonical	3	306	junction_1	0	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATAAACTTGTTTTCT	NA	False	NA	NA	False	AATAAA	-6	NA	17598973	17601394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_17599208_17599685
ENSMUSG00000039910.11_1	chr10	+	1190	1	FSM	ENSMUSG00000039910.11	ENSMUST00000219558.2	2411	1	1224	-3	1215	3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATAAACTTGTTTTCT	NA	False	NA	NA	False	AATAAA	-6	NA	17600204	17601394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_17600200_17601400
ENSMUSG00000039911.14_0	chr4	-	3066	3	FSM	ENSMUSG00000039911.14	ENSMUST00000038562.9	3092	3	15	11	3	-11	multi-exon	FALSE	canonical	3	59	junction_1	6.5	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATGAAACCATCCGAG	NA	False	NA	-8	True	AATAAA	-13	NA	150039485	149980750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149982799_149990872_149991715_150039309
ENSMUSG00000039911.14_2	chr4	-	2607	2	FSM	ENSMUSG00000039911.14	ENSMUST00000105684.2	1002	2	315	-1920	315	-11	multi-exon	FALSE	canonical	3	59	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATGAAACCATCCGAG	9987	False	NA	-8	True	AATAAA	-13	NA	149991431	149980750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149982799_149990872
ENSMUSG00000039911.14_3	chr4	-	1341	1	ISM	ENSMUSG00000039911.14	ENSMUST00000038562.9	3092	3	57409	11	9655	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATGAAACCATCCGAG	NA	False	NA	-8	True	AATAAA	-13	NA	149982091	149980750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_149980800_149982100
ENSMUSG00000039914.7_0	chr10	-	1267	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220027.2	1307	5	41	-1	41	1	multi-exon	FALSE	canonical	3	22	junction_4	35.9400542570542	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTGTCATTTTTTGAGG	7286	False	NA	-2	True	AATAAA	-13	NA	128204519	128198967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204387
ENSMUSG00000039914.7_1	chr10	-	1427	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220227.2	1434	5	8	-1	8	1	multi-exon	FALSE	canonical	3	69	junction_4	16.3248277173145	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTGTCATTTTTTGAGG	6947	False	NA	-2	True	AATAAA	-13	NA	128204858	128198967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204566
ENSMUSG00000039914.7_2	chr10	-	4212	4	NIC	ENSMUSG00000039914.7	novel	1421	5	NA	NA	-1	2	intron_retention	FALSE	canonical	3	69	junction_3	15.06283137026	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTCATTTTTTGAGGG	6954	False	NA	-1	True	AATAAA	-14	NA	128204851	128198966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_128199661_128200273_128200376_128200891_128204023_128204566
ENSMUSG00000039914.7_3	chr10	-	1228	4	NIC	ENSMUSG00000039914.7	novel	1434	5	NA	NA	-1	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	43.5660418215839	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTCATTTTTTGAGGG	6954	False	NA	-1	True	AATAAA	-14	NA	128204851	128198966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_128199661_128200273_128200376_128203875_128204023_128204566
ENSMUSG00000039914.7_4	chr10	-	1473	5	FSM	ENSMUSG00000039914.7	ENSMUST00000043211.7	1421	5	-52	0	-9	0	multi-exon	FALSE	canonical	3	7	junction_3	37.9629753839185	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	6930	False	NA	-3	True	AATAAA	-12	NA	128204875	128198968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128199661_128200273_128200376_128200891_128201115_128203875_128204023_128204566
ENSMUSG00000039914.7_5	chr10	-	2116	3	ISM	ENSMUSG00000039914.7	ENSMUST00000220027.2	1307	5	2349	-2	-938	2	3prime_fragment	FALSE	canonical	3	94	junction_2	5.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTCATTTTTTGAGGG	9594	False	NA	-1	True	AATAAA	-14	NA	128202211	128198966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128199661_128200273_128200376_128200891
ENSMUSG00000039917.11_0	chr5	+	1887	4	FSM	ENSMUSG00000039917.11	ENSMUST00000043707.7	4207	4	90	2230	4	-381	multi-exon	FALSE	canonical	3	209	junction_1	25.703436864876	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTGTGTGGCATACTG	NA	False	NA	15	True	TATAAA	-19	NA	135661561	135673000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135661773_135664848_135665257_135667943_135668095_135671883
ENSMUSG00000039917.11_1	chr5	+	2000	5	FSM	ENSMUSG00000039917.11	ENSMUST00000136748.6	4363	5	61	2302	-1	-381	multi-exon	FALSE	canonical	3	43	junction_1	101.030626544628	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTGTGTGGCATACTG	NA	False	NA	15	True	TATAAA	-19	NA	135661568	135673000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135661773_135663957_135664078_135664848_135665257_135667943_135668095_135671883
ENSMUSG00000039929.15_19	chr16	-	4408	19	ISM	ENSMUSG00000039929.15	ENSMUST00000140920.2	7344	39	34133	1	-3468	-1	3prime_fragment	FALSE	canonical	3	66	junction_16	16.4883984653033	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCTTTTGTACTTTGTT	NA	False	NA	-11	True	AATAAA	-15	NA	90573147	90548415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_90549067_90550210_90550811_90551698_90551941_90552961_90553160_90554630_90554741_90556686_90556831_90557278_90557386_90558510_90558623_90559154_90559316_90563542_90563652_90563904_90564077_90564918_90564983_90565089_90565201_90566275_90566470_90568356_90568416_90569467_90569655_90570151_90570351_90570936_90571790_90573012
ENSMUSG00000039929.15_2	chr16	-	7343	39	FSM	ENSMUSG00000039929.15	ENSMUST00000140920.2	7344	39	0	1	0	-1	multi-exon	FALSE	canonical	3	66	junction_16	15.3989422955836	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCTTTTGTACTTTGTT	8679	False	NA	-11	True	AATAAA	-15	NA	90607280	90548415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_90549067_90550210_90550811_90551698_90551941_90552961_90553160_90554630_90554741_90556686_90556831_90557278_90557386_90558510_90558623_90559154_90559316_90563542_90563652_90563904_90564077_90564918_90564983_90565089_90565201_90566275_90566470_90568356_90568416_90569467_90569655_90570151_90570351_90570936_90571790_90573012_90573193_90574241_90574461_90575935_90576130_90577090_90577262_90578398_90578538_90578944_90579062_90580163_90580284_90582989_90583103_90584215_90584333_90584971_90585102_90585822_90585997_90587962_90588101_90589573_90589770_90592248_90592374_90593245_90593381_90594780_90594867_90596907_90597005_90600214_90600348_90601335_90601488_90602285_90602426_90607086
ENSMUSG00000039929.15_4	chr16	-	3733	18	ISM	ENSMUSG00000039929.15	ENSMUST00000140920.2	7344	39	36030	2	-1571	-2	3prime_fragment	FALSE	canonical	3	66	junction_16	16.9528146298906	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGCTTTTGTACTTTGT	NA	False	NA	-12	True	AATAAA	-14	NA	90571250	90548416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_90549067_90550210_90550811_90551698_90551941_90552961_90553160_90554630_90554741_90556686_90556831_90557278_90557386_90558510_90558623_90559154_90559316_90563542_90563652_90563904_90564077_90564918_90564983_90565089_90565201_90566275_90566470_90568356_90568416_90569467_90569655_90570151_90570351_90570936
ENSMUSG00000039936.19_0	chr4	-	4865	24	NIC	ENSMUSG00000039936.19	novel	4335	25	NA	NA	35	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_23	5.81211823146122	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCTTGGCTCAAATAAC	NA	False	NA	-2	True	AATAAA	-18	NA	149783120	149733626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739706_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600_149747774_149758532_149758652_149783011
ENSMUSG00000039936.19_1	chr4	-	4934	24	NIC	ENSMUSG00000039936.19	novel	4832	24	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_23	5.23547590382274	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCTTGGCTCAAATAAC	NA	False	NA	-2	True	AATAAA	-18	NA	149760546	149733626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739706_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600_149747774_149758532_149758652_149760368
ENSMUSG00000039936.19_17	chr4	-	4129	20	ISM	ENSMUSG00000039936.19	ENSMUST00000105688.10	4335	25	38789	-647	3468	0	3prime_fragment	FALSE	canonical	3	10	junction_11	4.10188795124184	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCTTGGCTCAAATAAC	5185	False	NA	-2	True	AATAAA	-18	NA	149744273	149733626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739706_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149
ENSMUSG00000039936.19_18	chr4	-	4462	21	ISM	ENSMUSG00000039936.19	ENSMUST00000105688.10	4335	25	38374	-644	3053	-2	3prime_fragment	FALSE	canonical	3	10	junction_11	4.04227658628155	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGTTCTTGGCTCAAAT	4770	False	NA	-5	True	AATAAA	-15	NA	149744688	149733629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739706_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458
ENSMUSG00000039936.19_20	chr4	-	700	1	ISM	ENSMUSG00000039936.19	ENSMUST00000038859.14	4905	24	48829	2	13415	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCTTGGCTCAAATAAC	7896	False	NA	-2	True	AATAAA	-18	NA	149734326	149733626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_149733600_149734300
ENSMUSG00000039936.19_21	chr4	-	4983	25	FSM	ENSMUSG00000039936.19	ENSMUST00000105688.10	4335	25	-1	-647	-1	0	multi-exon	FALSE	canonical	1	1	junction_23	6.83892048011478	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCTTGGCTCAAATAAC	NA	False	NA	-2	True	AATAAA	-18	NA	149783063	149733626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739706_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600_149747774_149758532_149758652_149781505_149781681_149783011
ENSMUSG00000039936.19_33	chr4	-	2507	8	ISM	ENSMUSG00000039936.19	ENSMUST00000105689.8	3132	22	8899	-1445	8899	-24	3prime_fragment	FALSE	canonical	3	20	junction_6	2.81395937194174	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAAAACGTTTTTATG	3380	False	NA	-27	True	NA	NA	NA	149738842	149733651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681
ENSMUSG00000039936.19_6	chr4	-	4171	19	ISM	ENSMUSG00000039936.19	ENSMUST00000105688.10	4335	25	39289	-647	3968	0	3prime_fragment	TRUE	canonical	3	10	junction_11	4.1785017103275	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCTTGGCTCAAATAAC	5685	False	NA	-2	True	AATAAA	-18	NA	149743773	149733626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739706_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427
ENSMUSG00000039936.19_7	chr4	-	4821	24	FSM	ENSMUSG00000039936.19	ENSMUST00000105690.9	4921	24	98	2	-5	0	multi-exon	FALSE	canonical	1	2	junction_23	6.4283163750526	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCTTGGCTCAAATAAC	NA	False	NA	-2	True	AATAAA	-18	NA	149783067	149733626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739715_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600_149747774_149758532_149758652_149783011
ENSMUSG00000039943.17_31	chr2	+	5415	39	NIC	ENSMUSG00000039943.17	novel	5217	37	NA	NA	0	-16	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	18.1510475266798	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATGAAAACACATGTA	NA	False	NA	-14	True	NA	NA	NA	135501473	135856497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_135501651_135583749_135583808_135647468_135647526_135719302_135719402_135749418_135749500_135750269_135750330_135752020_135752165_135771874_135771955_135774168_135774223_135780179_135780262_135781129_135781231_135781866_135781925_135788965_135789075_135792131_135792343_135793912_135794007_135796265_135796346_135796834_135796920_135799974_135800066_135800561_135800658_135803638_135803740_135808944_135809087_135809836_135809922_135810240_135810366_135812313_135812366_135813677_135813781_135814831_135814997_135818018_135818224_135823952_135824042_135824895_135825047_135829399_135829450_135829756_135829823_135836213_135836330_135840596_135840673_135842053_135842230_135844478_135844581_135849259_135849318_135849742_135849830_135852855_135852893_135854885
ENSMUSG00000039943.17_9	chr2	+	5381	39	NIC	ENSMUSG00000039943.17	novel	5217	37	NA	NA	-234	-8	combination_of_known_junctions	TRUE	canonical	3	68	junction_1	17.4713061159182	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACACATGTAACATCTAC	NA	False	NA	-6	True	AATAAA	-6	NA	135501239	135856505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_135501375_135583749_135583808_135647468_135647526_135719302_135719402_135749418_135749500_135750269_135750330_135752020_135752165_135771874_135771955_135774168_135774223_135780179_135780262_135781129_135781231_135781866_135781925_135788965_135789075_135792131_135792343_135793912_135794007_135796265_135796346_135796834_135796920_135799974_135800066_135800561_135800658_135803638_135803740_135808944_135809087_135809836_135809922_135810240_135810366_135812313_135812366_135813677_135813781_135814831_135814997_135818018_135818224_135823952_135824042_135824895_135825047_135829399_135829450_135829756_135829823_135836213_135836330_135840596_135840673_135842053_135842230_135844478_135844581_135849259_135849318_135849742_135849830_135852855_135852893_135854885
ENSMUSG00000039952.16_0	chr9	-	5390	4	FSM	ENSMUSG00000039952.16	ENSMUST00000191899.6	5662	4	36	236	-4	-236	multi-exon	FALSE	canonical	3	259	junction_3	109.352640571684	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTCATTGCCTCTGAC	NA	False	NA	61	True	AATAAA	-16	NA	108141121	108082068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140978
ENSMUSG00000039952.16_17	chr9	-	5330	3	FSM	ENSMUSG00000039952.16	ENSMUST00000166905.8	4244	3	-1	-1085	-1	-236	multi-exon	FALSE	canonical	3	32	junction_2	218.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTCATTGCCTCTGAC	NA	False	NA	61	True	AATAAA	-16	NA	108141118	108082068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108086861_108095211_108095610_108140978
ENSMUSG00000039952.16_2	chr9	-	5403	4	FSM	ENSMUSG00000039952.16	ENSMUST00000080435.9	4364	4	35	-1074	-29	-236	multi-exon	FALSE	canonical	3	204	junction_3	135.056366833342	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTCATTGCCTCTGAC	NA	False	NA	61	True	AATAAA	-16	NA	108140979	108082068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140823
ENSMUSG00000039952.16_3	chr9	-	5539	4	FSM	ENSMUSG00000039952.16	ENSMUST00000171412.7	4415	4	-36	-1088	-21	-236	multi-exon	FALSE	canonical	3	68	junction_3	198.863995959271	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTCATTGCCTCTGAC	NA	False	NA	61	True	AATAAA	-16	NA	108140971	108082068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140679
ENSMUSG00000039952.16_4	chr9	-	3101	1	ISM	ENSMUSG00000039952.16	ENSMUST00000191899.6	5662	4	55988	236	55739	-236	mono-exon	FALSE	NA	NA	NA	NA	NA	212	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTCATTGCCTCTGAC	9365	False	NA	61	True	AATAAA	-16	NA	108085169	108082068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_108082100_108085200
ENSMUSG00000039952.16_5	chr9	-	5094	2	ISM	ENSMUSG00000039952.16	ENSMUST00000191899.6	5662	4	45644	236	45395	-236	3prime_fragment	FALSE	canonical	3	469	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTCATTGCCTCTGAC	9375	False	NA	61	True	AATAAA	-16	NA	108095513	108082068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_108086861_108095211
ENSMUSG00000039952.16_7	chr9	-	5480	4	NIC	ENSMUSG00000039952.16	novel	5662	4	NA	NA	-2	-236	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	175.562587763516	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTCATTGCCTCTGAC	NA	False	NA	61	True	AATAAA	-16	NA	108141119	108082068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108086861_108095211_108095610_108130207_108130357_108140978
ENSMUSG00000039953.14_2	chr4	+	4454	18	FSM	ENSMUSG00000039953.14	ENSMUST00000105691.8	4459	18	4	1	4	-1	multi-exon	FALSE	canonical	3	455	junction_9	51.7981175594149	972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGAGTGGGGTCCATTC	NA	False	NA	23	True	AATAAA	-18	NA	149670928	149733355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_149671230_149698506_149698630_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829
ENSMUSG00000039953.14_4	chr4	+	4487	19	FSM	ENSMUSG00000039953.14	ENSMUST00000039144.7	3319	19	-169	-999	1	-1	multi-exon	FALSE	canonical	3	19	junction_2	165.993641109799	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGAGTGGGGTCCATTC	NA	False	NA	23	True	AATAAA	-18	NA	149670925	149733355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_149671230_149698506_149698630_149710543_149710574_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829
ENSMUSG00000039953.14_5	chr4	+	4397	17	NIC	ENSMUSG00000039953.14	novel	4459	18	NA	NA	4	-1	combination_of_known_splicesites	FALSE	canonical	3	47	junction_9	127.641037190239	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGAGTGGGGTCCATTC	NA	False	NA	23	True	AATAAA	-18	NA	149670928	149733355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_149671230_149698506_149698630_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829
ENSMUSG00000039953.14_81	chr4	+	1386	1	ISM	ENSMUSG00000039953.14	ENSMUST00000105691.8	4459	18	61045	1	20383	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGAGTGGGGTCCATTC	NA	False	NA	23	True	AATAAA	-18	NA	149731969	149733355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_149732000_149733400
ENSMUSG00000039958.18_2	chr6	+	1492	4	FSM	ENSMUSG00000039958.18	ENSMUST00000047531.16	1562	4	61	9	0	-4	multi-exon	FALSE	canonical	1	2	junction_1	11.6141675934562	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGATAAATAAGGAACTCA	NA	False	NA	NA	False	NA	NA	NA	149043071	149052660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_149043203_149045531_149045941_149048655_149048787_149051839
ENSMUSG00000039958.18_3	chr6	+	1621	5	FSM	ENSMUSG00000039958.18	ENSMUST00000111551.2	1558	5	-72	9	0	-4	multi-exon	FALSE	canonical	1	2	junction_2	10.2316909648406	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGATAAATAAGGAACTCA	NA	False	NA	NA	False	NA	NA	NA	149043071	149052660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_149043203_149044103_149044214_149045512_149045941_149048655_149048787_149051839
ENSMUSG00000039958.18_4	chr6	+	1323	3	FSM	ENSMUSG00000039958.18	ENSMUST00000111548.8	1398	3	54	21	-4	-21	multi-exon	FALSE	canonical	3	12	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAACATAACCAAAAG	NA	False	NA	NA	False	NA	NA	NA	149043067	149046609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_149043203_149044103_149044214_149045531
ENSMUSG00000039958.18_5	chr6	+	2660	1	NIC	ENSMUSG00000039958.18	novel	1576	4	NA	NA	6857	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGATAAATAAGGAACTCA	NA	False	NA	NA	False	NA	NA	NA	149050000	149052660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_149050000_149052700
ENSMUSG00000039958.18_6	chr6	+	1606	5	FSM	ENSMUSG00000039958.18	ENSMUST00000134306.8	848	5	6	-764	-4	-4	multi-exon	FALSE	canonical	3	12	junction_2	6.86931583201704	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGATAAATAAGGAACTCA	NA	False	NA	NA	False	NA	NA	NA	149043067	149052660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_149043203_149044103_149044214_149045531_149045941_149048655_149048787_149051839
ENSMUSG00000039959.14_1	chr5	-	4028	32	NIC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	1	-3486	combination_of_known_junctions	FALSE	canonical	2	76	junction_16	43.795262003845	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGCCCCAGAGATGCTTG	9611	False	NA	NA	False	NA	NA	NA	135518111	135438874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461903_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
ENSMUSG00000039959.14_2	chr5	-	3177	1	ISM	ENSMUSG00000039959.14	ENSMUST00000060311.12	7835	31	135399	9	20378	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAGAACTCTGGTGATA	NA	False	NA	-7	True	AATAAA	-15	NA	135438570	135435393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_135435400_135438600
ENSMUSG00000039959.14_3	chr5	-	5183	31	NIC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	1	-2646	intron_retention	TRUE	canonical	2	76	junction_15	42.4266818562722	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAGCCACTATCATTT	9611	False	NA	-10	True	AATAAA	-13	NA	135518111	135438034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461903_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
ENSMUSG00000039959.14_5	chr5	-	5208	31	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-2	-2648	intron_retention	FALSE	canonical	2	120	junction_15	37.0834044943137	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGAAAAGCCACTATCAT	9608	False	NA	-12	True	AATAAA	-11	NA	135518114	135438036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
ENSMUSG00000039959.14_8	chr5	-	3929	32	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	1	-3609	at_least_one_novel_splicesite	FALSE	canonical	2	120	junction_16	38.9079599109602	124	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCTACTGAACCAGAAAGC	9611	False	NA	12	True	TATAAA	-41	NA	135518111	135438997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
ENSMUSG00000039960.6_0	chr8	+	3453	3	FSM	ENSMUSG00000039960.6	ENSMUST00000045487.4	3371	3	-88	6	-88	-6	multi-exon	FALSE	canonical	3	44	junction_2	0.5	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGAGCTGCTCTTGCTTAT	NA	False	NA	2	True	AATAAA	-14	NA	124380579	124390617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124380956_124382230_124382290_124387599
ENSMUSG00000039960.6_4	chr8	+	2699	1	ISM	ENSMUSG00000039960.6	ENSMUST00000045487.4	3371	3	7251	6	7251	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGAGCTGCTCTTGCTTAT	NA	False	NA	2	True	AATAAA	-14	NA	124387918	124390617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_124387900_124390600
ENSMUSG00000039963.21_1	chr11	+	3650	16	ISM	ENSMUSG00000039963.21	ENSMUST00000236813.2	4769	21	7355	-6	-2765	6	3prime_fragment	FALSE	canonical	0	0	junction_1	4.44921965692362	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCAGAAGAGTTAAGACACA	37	False	NA	NA	False	AATAAA	-21	NA	119126778	119156070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119127125_119128689_119128774_119128854_119129075_119133252_119133411_119133538_119133662_119133822_119133945_119136660_119136905_119136993_119137177_119141764_119142011_119142628_119142843_119144075_119144246_119144445_119144538_119145167_119145289_119150680_119150870_119153900_119154060_119155091
ENSMUSG00000039963.21_11	chr11	+	3135	14	NIC	ENSMUSG00000039963.21	novel	799	5	NA	NA	-96	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	4.428257835269	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAGCTGTTTCTGGTCA	2706	False	NA	NA	False	AATAAA	-5	NA	119129447	119156054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_119129599_119133252_119133411_119133538_119133662_119133822_119133945_119136660_119136905_119136993_119137177_119141764_119142011_119142628_119142843_119144075_119144246_119144445_119144538_119145167_119145289_119150680_119150870_119153900_119154060_119155091
ENSMUSG00000039963.21_5	chr11	+	3679	4	ISM	ENSMUSG00000039963.21	ENSMUST00000053440.8	3524	19	23872	-1	-552	1	intron_retention	FALSE	canonical	0	0	junction_1	6.12825877028341	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGCCATGGTCGTGGTG	NA	False	NA	NA	False	NA	NA	NA	119143826	119153727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119144246_119144445_119144538_119145167_119145289_119150680
ENSMUSG00000039963.21_6	chr11	+	1942	6	ISM	ENSMUSG00000039963.21	ENSMUST00000236813.2	4769	21	24404	10	-551	-8	3prime_fragment	FALSE	canonical	0	0	junction_1	4.84148737476408	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAGCTGTTTCTGGTCA	NA	False	NA	NA	False	AATAAA	-5	NA	119143827	119156054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119144246_119144445_119144538_119145167_119145289_119150680_119150870_119153900_119154060_119155091
ENSMUSG00000039963.21_7	chr11	+	1321	3	ISM	ENSMUSG00000039963.21	ENSMUST00000126652.2	1662	4	926	0	87	0	3prime_fragment	FALSE	canonical	3	9	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTCAGAAGAGTT	5557	False	NA	NA	False	AATAAA	-13	NA	119150678	119156062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119150870_119153900_119154060_119155091
ENSMUSG00000039967.15_1	chr4	-	4057	1	ISM	ENSMUSG00000039967.15	ENSMUST00000098163.9	9941	8	75742	19	75742	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATATTTTTTCAACAAC	NA	False	NA	-14	True	AATAAA	-18	NA	34807188	34803131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_34803100_34807200
ENSMUSG00000039967.15_2	chr4	-	9935	8	FSM	ENSMUSG00000039967.15	ENSMUST00000047950.6	9986	8	25	26	-5	-26	multi-exon	FALSE	canonical	3	109	junction_4	23.430313524081	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTGATTTATATTTTTT	6	True	NA	-21	True	AATAAA	-11	NA	34882935	34803138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_34812044_34816273_34816416_34819463_34819601_34826692_34826896_34839331_34839468_34839568_34839648_34839831_34839987_34882757
ENSMUSG00000039967.15_3	chr4	-	10161	9	NNC	ENSMUSG00000039967.15	novel	9986	8	NA	NA	-4	-21	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_8	58.5062763727106	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTTATATTTTTTCAACA	7	True	NA	-16	True	AATAAA	-16	NA	34882934	34803133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_34812044_34816273_34816416_34819463_34819601_34826692_34826896_34839331_34839468_34839568_34839648_34839831_34839987_34847810_34848033_34882757
ENSMUSG00000039968.10_0	chr5	-	2349	1	Genic_Genomic	ENSMUSG00000039968.10	novel	NA	NA	NA	NA	27025	2	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTTTACCTTTGTTTT	NA	False	NA	-16	True	AATAAA	-20	NA	21100372	21098023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_-_21098000_21100400
ENSMUSG00000039968.10_1	chr5	-	5532	8	FSM	ENSMUSG00000039968.10	ENSMUST00000036489.10	5550	8	14	4	14	-4	multi-exon	FALSE	canonical	3	36	junction_6	8.29802041797578	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACAATCTTTTTACCTT	NA	False	NA	-22	True	AATAAA	-14	NA	21156806	21098029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_21101703_21101790_21101900_21107285_21107454_21110777_21110921_21113104_21113243_21124522_21125161_21132617_21132729_21156254
ENSMUSG00000039968.10_7	chr5	-	4448	6	ISM	ENSMUSG00000039968.10	ENSMUST00000036489.10	5550	8	32085	0	2662	0	3prime_fragment	FALSE	canonical	3	50	junction_3	4.71593044902064	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATCTTTTTACCTTTGTT	NA	False	NA	-18	True	AATAAA	-18	NA	21124735	21098025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_21101703_21101790_21101900_21107285_21107454_21110777_21110921_21113104_21113243_21124522
ENSMUSG00000039976.5_0	chr11	-	3278	1	ISM	ENSMUSG00000039976.5	ENSMUST00000036113.4	6986	12	82174	3	75651	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACATGGTCCTGTGCCT	3770	False	NA	-4	True	AATAAA	-12	NA	119037151	119033873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_119033900_119037200
ENSMUSG00000039976.5_4	chr11	-	2397	3	ISM	ENSMUSG00000039976.5	ENSMUST00000207655.2	2855	12	-10	60149	-10	3357	5prime_fragment	FALSE	canonical	2	4	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCTAGCCGGAGAGTATG	NA	False	NA	NA	False	AATAAA	-17	NA	119119297	119098109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_119100195_119101330_119101567_119119221
ENSMUSG00000039982.9_0	chr19	-	4817	9	NNC	ENSMUSG00000039982.9	novel	5226	9	NA	NA	-691	-3	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	5.29002599237471	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGCACAAATTGTCGTT	7541	False	NA	NA	False	AATAAA	-10	NA	12479509	12443704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_12447074_12450593_12450684_12455489_12455652_12459437_12459591_12460409_12460472_12462627_12462790_12463792_12463855_12469199_12469915_12479467
ENSMUSG00000039982.9_1	chr19	-	5363	9	FSM	ENSMUSG00000039982.9	ENSMUST00000045521.9	5226	9	-134	-3	-134	3	multi-exon	TRUE	canonical	3	5	junction_1	4.63680924774785	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAATTGTCGTTACTCCT	8098	False	NA	NA	False	AATAAA	-16	NA	12478952	12443698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_12447074_12450593_12450684_12455489_12455652_12459437_12459591_12460409_12460472_12462627_12462790_12463792_12463855_12469199_12469915_12478370
ENSMUSG00000039982.9_2	chr19	-	4777	8	ISM	ENSMUSG00000039982.9	ENSMUST00000045521.9	5226	9	8902	3	8902	-3	3prime_fragment	FALSE	canonical	3	5	junction_1	4.80645824036021	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGCACAAATTGTCGTT	7056	False	NA	NA	False	AATAAA	-10	NA	12469916	12443704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_12447074_12450593_12450684_12455489_12455652_12459437_12459591_12460409_12460472_12462627_12462790_12463792_12463855_12469199
ENSMUSG00000039982.9_3	chr19	-	3303	1	ISM	ENSMUSG00000039982.9	ENSMUST00000045521.9	5226	9	31814	0	31814	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCACAAATTGTCGTTACT	NA	False	NA	NA	False	AATAAA	-13	NA	12447004	12443701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_12443700_12447000
ENSMUSG00000039982.9_4	chr19	-	4737	2	ISM	ENSMUSG00000039982.9	ENSMUST00000045521.9	5226	9	-605	22529	-605	-22529	5prime_fragment	FALSE	canonical	3	10	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGCACAAGGCTCAGC	7627	False	NA	NA	False	AATAAA	-18	NA	12479423	12466230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_12469915_12478370
ENSMUSG00000039983.14_0	chr2	-	1821	4	NIC	ENSMUSG00000039983.14	novel	1870	4	NA	NA	11	-31	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	18.6726180988812	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCATATACATAAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	118859847	118848290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_118849646_118852549_118852707_118857618_118857869_118859788
ENSMUSG00000039983.14_1	chr2	-	1466	4	FSM	ENSMUSG00000039983.14	ENSMUST00000036470.14	1870	4	21	383	5	-383	multi-exon	FALSE	canonical	3	33	junction_3	9.0921211313239	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAACTGTGTAGTGTGTGT	NA	False	NA	-3	True	TATAAA	-14	NA	118859853	118848642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_118849646_118852549_118852707_118857618_118857869_118859797
ENSMUSG00000039983.14_2	chr2	-	4374	3	FSM	ENSMUSG00000039983.14	ENSMUST00000110833.2	732	3	1	-3643	1	-383	multi-exon	FALSE	canonical	3	33	junction_2	11	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAACTGTGTAGTGTGTGT	NA	False	NA	-3	True	TATAAA	-14	NA	118859857	118848642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_118852707_118857618_118857869_118859797
ENSMUSG00000039983.14_4	chr2	-	1796	3	ISM	ENSMUSG00000039983.14	ENSMUST00000036470.14	1870	4	2003	0	1987	0	3prime_fragment	FALSE	canonical	3	47	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAAAGATTTTCT	NA	False	NA	NA	False	NA	NA	NA	118857871	118848259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_118849646_118852549_118852707_118857618
ENSMUSG00000039985.15_0	chr6	-	2595	6	NIC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	1	-12	combination_of_known_junctions	FALSE	canonical	3	122	junction_5	837.245818144229	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAATAAAAGTTGTCTC	NA	False	NA	NA	False	AATAAA	-13	NA	148847652	148822566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847544
ENSMUSG00000039985.15_1	chr6	-	2634	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	29	34	5	-12	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	3112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAATAAAAGTTGTCTC	NA	False	NA	NA	False	AATAAA	-13	NA	148847936	148822566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
ENSMUSG00000039985.15_8	chr6	-	1462	1	ISM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	23939	32	10621	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAAGTTGTCTCAT	7445	False	NA	NA	False	AATAAA	-15	NA	148824026	148822564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_148822600_148824000
ENSMUSG00000039987.16_0	chr5	-	4699	18	FSM	ENSMUSG00000039987.16	ENSMUST00000118174.8	4840	18	30	111	-16	-111	multi-exon	TRUE	canonical	3	159	junction_9	38.2607155309617	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACTTGTGTGTGTTTTT	NA	False	NA	-13	True	AATAAA	-11	NA	21087092	20963771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ENSMUSG00000039987.16_10	chr5	-	4539	17	NIC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	-20	-109	combination_of_known_junctions	FALSE	canonical	3	22	junction_12	58.3812563563855	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGTGTGTGTTTTTTT	NA	False	NA	-11	True	AATAAA	-13	NA	21087096	20963769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ENSMUSG00000039987.16_15	chr5	-	4492	17	NIC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	-19	-111	combination_of_known_junctions	FALSE	canonical	3	22	junction_12	67.1548758002723	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACTTGTGTGTGTTTTT	NA	False	NA	-13	True	AATAAA	-11	NA	21087095	20963771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987446_20994626_20994783_20999292_20999480_21006899_21007065_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ENSMUSG00000039987.16_2	chr5	-	4658	18	NIC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	-19	-111	combination_of_known_junctions	FALSE	canonical	3	53	junction_9	51.0853143531539	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACTTGTGTGTGTTTTT	NA	False	NA	-13	True	AATAAA	-11	NA	21087095	20963771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987446_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ENSMUSG00000039987.16_57	chr5	-	2438	8	FSM	ENSMUSG00000039987.16	ENSMUST00000140147.2	2000	8	-7	-431	-7	431	multi-exon	FALSE	canonical	3	167	junction_2	38.2152870362805	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTATGTGTAGTTTAA	NA	False	NA	-17	True	NA	NA	NA	21087083	20997868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
ENSMUSG00000039987.16_6	chr5	-	1651	1	ISM	ENSMUSG00000039987.16	ENSMUST00000118174.8	4840	18	121704	107	13693	-107	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTGTGTGTTTTTTTAA	NA	False	NA	-9	True	AATAAA	-15	NA	20965418	20963767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_20963800_20965400
ENSMUSG00000039988.15_0	chr3	+	4074	13	FSM	ENSMUSG00000039988.15	ENSMUST00000040787.13	3903	13	-182	11	-7	-11	multi-exon	FALSE	canonical	3	283	junction_4	30.2143959433615	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGACTTTTCATGATGTG	NA	False	NA	4	True	AATAAA	-12	NA	157652868	157713660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_157653594_157666620_157666663_157667914_157668020_157677868_157677955_157678636_157678683_157680864_157680932_157694276_157694422_157697317_157697450_157700233_157700396_157705293_157705374_157706710_157706810_157709345_157709447_157711376
ENSMUSG00000039988.15_1	chr3	+	4031	12	FSM	ENSMUSG00000039988.15	ENSMUST00000199727.5	3426	12	-7	-598	-7	-8	multi-exon	FALSE	canonical	3	11	junction_4	98.369517552294	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTTTCATGATGTGCCT	NA	False	NA	7	True	AATAAA	-15	NA	157652868	157713663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_157653594_157666620_157666663_157667914_157668020_157677868_157677955_157680864_157680932_157694276_157694422_157697317_157697450_157700233_157700396_157705293_157705374_157706710_157706810_157709345_157709447_157711376
ENSMUSG00000039988.15_48	chr3	+	1510	1	ISM	ENSMUSG00000039988.15	ENSMUST00000040787.13	3903	13	59103	8	7119	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTTTCATGATGTGCCT	NA	False	NA	7	True	AATAAA	-15	NA	157712153	157713663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_157712200_157713700
ENSMUSG00000039989.8_0	chr11	-	2614	5	FSM	ENSMUSG00000039989.8	ENSMUST00000026665.8	5179	5	-20	2585	-20	1215	multi-exon	FALSE	canonical	3	62	junction_3	7	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTCAGTGTCCGAGATTA	NA	False	NA	-3	True	ATTAAA	-18	NA	118977067	118970983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_118973128_118973342_118973410_118975388_118975455_118976582_118976627_118976774
ENSMUSG00000039989.8_1	chr11	-	1330	1	ISM	ENSMUSG00000039989.8	ENSMUST00000026665.8	5179	5	4734	2585	4734	1215	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTCAGTGTCCGAGATTA	NA	False	NA	-3	True	ATTAAA	-18	NA	118972313	118970983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_118971000_118972300
ENSMUSG00000039990.17_0	chr7	+	4476	25	FSM	ENSMUSG00000039990.17	ENSMUST00000051169.13	5424	25	152	796	2	-4	multi-exon	FALSE	canonical	3	128	junction_10	22.9037463577953	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATACCTTGGTAGTTCCC	NA	False	NA	2	True	AATAAA	-15	NA	133239423	133273904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_133239653_133240635_133240845_133242408_133242476_133243022_133243149_133245376_133245502_133245721_133245879_133248718_133248821_133249073_133249196_133249914_133250027_133252006_133252155_133252229_133252339_133252752_133252865_133253661_133253923_133255615_133255688_133255985_133256137_133258223_133258413_133258696_133258898_133260154_133260374_133261799_133262024_133263511_133263671_133263809_133263960_133265089_133265244_133267596_133267713_133269268_133269421_133273094
ENSMUSG00000039990.17_12	chr7	+	4473	25	NIC	ENSMUSG00000039990.17	novel	5424	25	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	3	29	junction_24	36.1270664537761	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATACCTTGGTAGTTCCC	NA	False	NA	2	True	AATAAA	-15	NA	133239423	133273904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_133239653_133240635_133240845_133242408_133242476_133243022_133243149_133245376_133245502_133245721_133245879_133248718_133248821_133249073_133249196_133249914_133250027_133252006_133252155_133252229_133252339_133252752_133252865_133253661_133253923_133255615_133255688_133255985_133256137_133258223_133258413_133258696_133258898_133260154_133260374_133261799_133262024_133263511_133263671_133263809_133263960_133265089_133265244_133267596_133267713_133269268_133269421_133273097
ENSMUSG00000039990.17_6	chr7	+	4374	24	FSM	ENSMUSG00000039990.17	ENSMUST00000128901.9	4380	24	2	4	2	-4	multi-exon	FALSE	canonical	3	27	junction_6	37.3605535837356	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATACCTTGGTAGTTCCC	NA	False	NA	2	True	AATAAA	-15	NA	133239423	133273904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_133239653_133240635_133240845_133242408_133242476_133243022_133243149_133245376_133245502_133245721_133245879_133249073_133249196_133249914_133250027_133252006_133252155_133252229_133252339_133252752_133252865_133253661_133253923_133255615_133255688_133255985_133256137_133258223_133258413_133258696_133258898_133260154_133260374_133261799_133262024_133263511_133263671_133263809_133263960_133265089_133265244_133267596_133267713_133269268_133269421_133273094
ENSMUSG00000039994.16_1	chr10	+	4428	29	FSM	ENSMUSG00000039994.16	ENSMUST00000105244.8	4341	29	-7	-80	2	0	multi-exon	FALSE	canonical	3	180	junction_28	54.1443059549842	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGAGACTTTTGTTG	6608	False	NA	11	True	AATAAA	-41	NA	128067950	128088801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
ENSMUSG00000039994.16_13	chr10	+	4420	29	NIC	ENSMUSG00000039994.16	novel	4457	29	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	73.5504824551665	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGAGACTTTTGTTG	6611	False	NA	11	True	AATAAA	-41	NA	128067953	128088801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_128068045_128075710_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ENSMUSG00000039994.16_4	chr10	+	4428	29	FSM	ENSMUSG00000039994.16	ENSMUST00000055539.11	4457	29	20	9	-4	0	multi-exon	FALSE	canonical	3	249	junction_23	47.0561431934758	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGAGACTTTTGTTG	6611	False	NA	11	True	AATAAA	-41	NA	128067953	128088801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ENSMUSG00000039994.16_5	chr10	+	4425	29	NIC	ENSMUSG00000039994.16	novel	4385	29	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_23	70.0407315897875	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGAGACTTTTGTTG	6608	False	NA	11	True	AATAAA	-41	NA	128067950	128088801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086156_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
ENSMUSG00000039994.16_6	chr10	+	4428	29	FSM	ENSMUSG00000039994.16	ENSMUST00000105242.8	4385	29	-52	9	2	0	multi-exon	FALSE	canonical	3	88	junction_23	64.9742001387741	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGAGACTTTTGTTG	6608	False	NA	11	True	AATAAA	-41	NA	128067950	128088801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086156_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ENSMUSG00000040003.19_2	chr5	+	3250	5	ISM	ENSMUSG00000040003.19	ENSMUST00000197443.5	6578	21	1375418	-18	-24	-1	3prime_fragment	FALSE	canonical	1	3	junction_4	2.1650635094611	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAACTGTGTGTTAATT	NA	False	NA	26	True	AATAAA	-34	NA	20807470	20909789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_20807520_20814261_20814458_20816042_20816187_20856052_20856192_20907067
ENSMUSG00000040003.19_3	chr5	+	1747	2	FSM	ENSMUSG00000040003.19	ENSMUST00000197307.2	826	2	-2	-919	-2	797	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTTTCTGCTTTCCTTA	NA	False	NA	NA	False	ATTAAA	-19	NA	20906664	20908720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_20906759_20907067
ENSMUSG00000040003.19_5	chr5	+	1510	1	ISM	ENSMUSG00000040003.19	ENSMUST00000197443.5	6578	21	1475156	1053	542	795	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTCCTTTCTGCTTTCCT	NA	False	NA	NA	False	ATTAAA	-17	NA	20907208	20908718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_20907200_20908700
ENSMUSG00000040003.19_8	chr5	+	3735	7	ISM	ENSMUSG00000040003.19	ENSMUST00000197443.5	6578	21	1342123	-14	-33319	-5	3prime_fragment	FALSE	canonical	1	3	junction_2	2.03442593595562	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTATATAAACTGTGTGTT	NA	False	NA	22	True	AATAAA	-30	NA	20774175	20909785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_20774353_20805775_20805962_20807344_20807520_20814261_20814458_20816042_20816187_20856052_20856192_20907067
ENSMUSG00000040006.14_1	chr10	-	1520	8	FSM	ENSMUSG00000040006.14	ENSMUST00000124838.2	1525	8	5	0	5	0	multi-exon	TRUE	canonical	3	252	junction_3	35.482102415679	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGAATTGCTTTATTT	7494	False	NA	-10	True	AATAAA	-8	NA	7656650	7643719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_7644350_7646120_7646285_7649061_7649196_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
ENSMUSG00000040006.14_3	chr10	-	1517	8	FSM	ENSMUSG00000040006.14	ENSMUST00000039763.14	1557	8	31	9	5	0	multi-exon	FALSE	canonical	3	22	junction_3	111.32321026119	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGAATTGCTTTATTT	7494	False	NA	-10	True	AATAAA	-8	NA	7656650	7643719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_7644350_7646120_7646285_7649061_7649193_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
ENSMUSG00000040007.9_1	chr2	+	4381	7	NIC	ENSMUSG00000040007.9	novel	662	2	NA	NA	-26	-4	combination_of_known_junctions	TRUE	canonical	3	13	junction_1	12.733376963276	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTATTTTCTGTGT	NA	False	NA	18	True	AATAAA	-28	NA	118730831	118755005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_118730928_118746368_118747791_118749613_118749997_118750677_118750838_118751236_118751314_118752076_118752178_118752863
ENSMUSG00000040007.9_11	chr2	+	3785	6	ISM	ENSMUSG00000040007.9	ENSMUST00000036578.7	4594	7	14929	10	14929	-10	3prime_fragment	FALSE	canonical	3	30	junction_4	8.33306666239986	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAGAAAAGAGTTATTTT	1074	False	NA	12	True	AATAAA	-22	NA	118746862	118754999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_118747791_118749613_118749997_118750677_118750838_118751236_118751314_118752076_118752178_118752863
ENSMUSG00000040007.9_15	chr2	+	1826	1	ISM	ENSMUSG00000040007.9	ENSMUST00000036578.7	4594	7	21244	6	21244	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAGAGTTATTTTCTGT	5913	False	NA	16	True	AATAAA	-26	NA	118753177	118755003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_118753200_118755000
ENSMUSG00000040007.9_3	chr2	+	4618	7	FSM	ENSMUSG00000040007.9	ENSMUST00000036578.7	4594	7	-32	8	-32	-8	multi-exon	FALSE	canonical	3	30	junction_5	7.79779171019306	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAAAAGAGTTATTTTCT	NA	False	NA	14	True	AATAAA	-24	NA	118731901	118755001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118732239_118746368_118747791_118749613_118749997_118750677_118750838_118751236_118751314_118752076_118752178_118752863
ENSMUSG00000040007.9_4	chr2	+	4591	7	NNC	ENSMUSG00000040007.9	novel	4594	7	NA	NA	-20	-14	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	12.1609575646365	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGATTTAGAAAAGAGTTA	NA	False	NA	8	True	AATAAA	-18	NA	118731913	118754995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_118732239_118746368_118747791_118749613_118749997_118750677_118750838_118751236_118751314_118752085_118752178_118752863
ENSMUSG00000040009.7_0	chr10	+	2490	4	FSM	ENSMUSG00000040009.7	ENSMUST00000037813.5	3519	4	-4	1033	-4	-1024	multi-exon	FALSE	canonical	3	7	junction_1	0.816496580927726	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-15	NA	74803004	74851706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_74803215_74814622_74814689_74826765_74827973_74850699
ENSMUSG00000040009.7_1	chr10	+	2441	3	NIC	ENSMUSG00000040009.7	novel	3519	4	NA	NA	-21	-1024	combination_of_known_junctions	TRUE	canonical	2	4	junction_1	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-15	NA	74802987	74851706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_74803215_74826765_74827973_74850699
ENSMUSG00000040010.11_0	chr8	-	3505	10	FSM	ENSMUSG00000040010.11	ENSMUST00000045557.10	3517	10	10	2	10	-2	multi-exon	FALSE	canonical	3	2143	junction_1	128.439734631066	5650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCTGACTGTGTTCTG	NA	False	NA	NA	False	TTTAAA	-16	NA	122634423	122607890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_122609835_122610329_122610508_122611721_122611872_122612647_122612745_122613018_122613123_122613596_122613721_122614235_122614281_122615060_122615167_122623166_122623305_122633804
ENSMUSG00000040010.11_1	chr8	-	1397	1	ISM	ENSMUSG00000040010.11	ENSMUST00000045557.10	3517	10	25146	2	1366	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCTGACTGTGTTCTG	2141	False	NA	NA	False	TTTAAA	-16	NA	122609287	122607890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_122607900_122609300
ENSMUSG00000040013.12_0	chr5	-	1410	9	FSM	ENSMUSG00000040013.12	ENSMUST00000044972.11	1447	9	33	4	3	-4	multi-exon	FALSE	canonical	3	793	junction_1	94.8445273856114	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGTATGCAGTACAATTC	NA	False	NA	-5	True	AATAAA	-16	NA	135378865	135320561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ENSMUSG00000040013.12_15	chr5	-	1258	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201534.2	1287	8	21	8	-8	-8	multi-exon	FALSE	canonical	3	922	junction_1	63.5022095067951	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTAGAACTGAAGTCATTA	NA	False	NA	-11	True	ATTAAA	-16	NA	135378876	135366227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ENSMUSG00000040013.12_2	chr5	-	1294	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201791.4	1297	8	-1	4	-1	-4	multi-exon	FALSE	canonical	3	68	junction_4	339.384075967639	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGTATGCAGTACAATTC	NA	False	NA	-5	True	AATAAA	-16	NA	135378869	135320561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ENSMUSG00000040018.10_0	chr19	-	2899	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	28	1871	28	-1871	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	725	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATTTTCAGTCAGCTAA	NA	False	NA	-19	True	AATAAA	-13	NA	43741411	43723563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
ENSMUSG00000040021.14_0	chr10	+	2571	4	ISM	ENSMUSG00000040021.14	ENSMUST00000165952.9	7209	8	-5	13150	-5	-10276	5prime_fragment	FALSE	canonical	3	58	junction_3	34.7658836600865	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATACTTTATATAATTATA	NA	False	NA	NA	False	AATAAA	-22	NA	7556972	7579074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_7557215_7567098_7567579_7573265_7573414_7577373
ENSMUSG00000040021.14_1	chr10	+	7209	8	FSM	ENSMUSG00000040021.14	ENSMUST00000165952.9	7209	8	-5	5	-5	-5	multi-exon	FALSE	canonical	3	31	junction_4	35.692564823412	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAATTATGACTGGAAAGC	NA	False	NA	18	True	AATAAA	-21	NA	7556972	7592219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_7557215_7567098_7567579_7573265_7573414_7577373_7578885_7581223_7581807_7586228_7586412_7586612_7586720_7588264
ENSMUSG00000040021.14_15	chr10	+	3216	1	ISM	ENSMUSG00000040021.14	ENSMUST00000165952.9	7209	8	32029	2	21996	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATGACTGGAAAGCTGA	NA	False	NA	21	True	AATAAA	-24	NA	7589006	7592222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_7589000_7592200
ENSMUSG00000040021.14_2	chr10	+	1163	3	ISM	ENSMUSG00000040021.14	ENSMUST00000165952.9	7209	8	-4	18517	-4	-15643	5prime_fragment	FALSE	canonical	3	105	junction_1	19	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGCCCTGCTCTCTCTCA	NA	False	NA	1	True	NA	NA	NA	7556973	7573707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_7557215_7567098_7567579_7573265
ENSMUSG00000040021.14_3	chr10	+	3171	5	ISM	ENSMUSG00000040021.14	ENSMUST00000165952.9	7209	8	-4	10210	-4	-7336	5prime_fragment	FALSE	canonical	3	31	junction_4	43.0312386528671	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTTGTCACTTTTGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	7556973	7582014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_7557215_7567098_7567579_7573265_7573414_7577373_7578885_7581223
ENSMUSG00000040021.14_5	chr10	+	5706	7	NIC	ENSMUSG00000040021.14	novel	7209	8	NA	NA	-10	-2	intron_retention	FALSE	canonical	2	3	junction_3	44.2621609152659	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATGACTGGAAAGCTGA	NA	False	NA	21	True	AATAAA	-24	NA	7556967	7592222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_7557215_7567098_7567579_7573265_7573414_7581223_7581807_7586228_7586412_7586612_7586720_7588264
ENSMUSG00000040022.15_0	chr19	-	2229	1	ISM	ENSMUSG00000040022.15	ENSMUST00000171986.8	5363	5	38540	2	37886	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCAGTCATCAGAATCTC	NA	False	NA	NA	False	ATTAAA	-13	NA	59893546	59891317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_59891300_59893500
ENSMUSG00000040025.18_0	chr4	-	2778	5	FSM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	195	1156	-3	222	multi-exon	FALSE	canonical	3	863	junction_4	54.1589097009901	1401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACTCCAGTACCACTTAG	NA	False	NA	-18	True	AATAAA	-19	NA	131939419	131913378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742_131938768_131939210
ENSMUSG00000040025.18_1	chr4	-	1849	2	ISM	ENSMUSG00000040025.18	ENSMUST00000102570.5	2536	4	7005	-682	5709	222	3prime_fragment	FALSE	canonical	3	983	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACTCCAGTACCACTTAG	4763	False	NA	-18	True	AATAAA	-19	NA	131932411	131913378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_131914259_131931442
ENSMUSG00000040026.9_0	chr7	-	473	3	FSM	ENSMUSG00000040026.9	ENSMUST00000211660.2	494	3	21	0	21	0	multi-exon	FALSE	canonical	2	12	junction_2	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTCGCTGTCACTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	46363152	46361422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_46361689_46362012_46362152_46363084
ENSMUSG00000040026.9_1	chr7	-	546	4	FSM	ENSMUSG00000040026.9	ENSMUST00000006956.9	555	4	2	7	2	-6	multi-exon	FALSE	canonical	1	3	junction_3	7.31816613336672	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCACTTTGTCGCTGTC	NA	False	NA	NA	False	AATAAA	-9	NA	46365122	46361428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_46361689_46362012_46362152_46364433_46364529_46365070
ENSMUSG00000040028.11_2	chr8	-	2439	6	FSM	ENSMUSG00000040028.11	ENSMUST00000098950.6	5743	6	342	2962	15	-1	multi-exon	FALSE	canonical	3	1349	junction_5	146.904594890698	1916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGTTTTGTTTTTTGT	NA	False	NA	-2	True	ATTAAA	-20	NA	4375071	4338343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4374885
ENSMUSG00000040028.11_8	chr8	-	2496	7	NNC	ENSMUSG00000040028.11	novel	5743	6	NA	NA	15	-2	at_least_one_novel_splicesite	FALSE	canonical	3	192	junction_6	712.072483826065	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTTTGTTTTGTTTTTTG	NA	False	NA	-3	True	ATTAAA	-19	NA	4375071	4338344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4362556_4362615_4374885
ENSMUSG00000040029.16_0	chr6	-	5334	25	NIC	ENSMUSG00000040029.16	novel	5360	25	NA	NA	10	0	combination_of_known_junctions	TRUE	canonical	3	31	junction_1	45.5182350517045	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTGAACTCTGTCTGC	NA	False	NA	-11	True	AATAAA	-17	NA	148732952	148672190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_148674305_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691421_148692938_148693006_148698138_148698265_148700120_148700282_148701224_148701391_148701678_148701769_148702984_148703102_148703410_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
ENSMUSG00000040029.16_4	chr6	-	5338	25	FSM	ENSMUSG00000040029.16	ENSMUST00000048418.14	5360	25	12	10	9	0	multi-exon	FALSE	canonical	3	188	junction_1	23.3505516827524	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTGAACTCTGTCTGC	NA	False	NA	-11	True	AATAAA	-17	NA	148732953	148672190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_148674308_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691421_148692938_148693006_148698138_148698265_148700120_148700282_148701224_148701391_148701678_148701769_148702984_148703102_148703410_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
ENSMUSG00000040029.16_7	chr6	-	1682	1	FSM	ENSMUSG00000040029.16	ENSMUST00000204424.2	4916	1	3236	-2	3236	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGAACTCTGTCTGCTC	NA	False	NA	-9	True	AATAAA	-19	NA	148673870	148672188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_148672200_148673900
ENSMUSG00000040033.17_1	chr10	+	4331	25	NNC	ENSMUSG00000040033.17	novel	4394	24	NA	NA	-3	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	20.4530288438874	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAACAACAAAGATACT	2358	False	NA	NA	False	AATAAA	-9	NA	128106424	128128707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114534_128114687_128116950_128117110_128117218_128117312_128117517_128117578_128117970_128117989_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126537_128126608_128126900_128127096
ENSMUSG00000040033.17_34	chr10	+	3595	17	ISM	ENSMUSG00000040033.17	ENSMUST00000085708.3	4394	24	8099	11	817	-11	3prime_fragment	FALSE	canonical	0	0	junction_7	18.1344802792912	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAACAACAAAGATACT	3719	False	NA	NA	False	AATAAA	-9	NA	128114543	128128707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128114687_128116950_128117110_128117218_128117312_128117517_128117578_128117970_128117989_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126900_128127096
ENSMUSG00000040033.17_41	chr10	+	1909	2	ISM	ENSMUSG00000040033.17	ENSMUST00000218862.2	1873	8	7163	-1041	6626	-11	3prime_fragment	FALSE	canonical	3	67	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAACAACAAAGATACT	NA	False	NA	NA	False	AATAAA	-9	NA	128126601	128128707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128126900_128127096
ENSMUSG00000040033.17_6	chr10	+	4403	24	FSM	ENSMUSG00000040033.17	ENSMUST00000085708.3	4394	24	-20	11	-3	-11	multi-exon	FALSE	canonical	0	0	junction_14	16.4593788801125	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAACAACAAAGATACT	2358	False	NA	NA	False	AATAAA	-9	NA	128106424	128128707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114534_128114687_128116950_128117110_128117218_128117312_128117517_128117578_128117970_128117989_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126900_128127096
ENSMUSG00000040034.16_1	chr10	+	1260	8	FSM	ENSMUSG00000040034.16	ENSMUST00000040135.9	1286	8	22	4	11	-4	multi-exon	FALSE	canonical	3	1090	junction_2	84.4680835751418	701	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCCAATGTTGGCTTGC	NA	False	NA	16	True	AATAAA	-16	NA	7543288	7554641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
ENSMUSG00000040040.17_0	chr14	+	3072	26	FSM	ENSMUSG00000040040.17	ENSMUST00000122063.8	3088	26	15	1	-3	-1	multi-exon	FALSE	canonical	3	32	junction_12	10.0195009855781	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCTGAGGCTAATGACTT	NA	False	NA	12	True	AATAAA	-14	NA	57661533	57755392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_57661645_57667994_57668091_57672251_57672315_57674683_57674741_57675698_57675753_57676322_57676387_57677162_57677233_57678387_57678479_57679334_57679440_57681811_57681915_57683021_57683137_57684997_57685230_57688127_57688199_57692917_57693005_57710431_57710532_57713499_57713587_57715347_57715535_57717353_57717463_57718113_57718265_57718852_57718969_57725028_57725082_57726348_57726415_57733629_57733737_57744661_57744729_57754437_57754549_57754793
ENSMUSG00000040040.17_2	chr14	+	3607	23	ISM	ENSMUSG00000040040.17	ENSMUST00000122063.8	3088	26	10	20350	-8	9975	5prime_fragment	FALSE	canonical	3	32	junction_12	10.5282971710678	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAAGGTTTCACTATGT	NA	False	NA	NA	False	AATAAA	-16	NA	57661528	57735043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_57661645_57667994_57668091_57672251_57672315_57674683_57674741_57675698_57675753_57676322_57676387_57677162_57677233_57678387_57678479_57679334_57679440_57681811_57681915_57683021_57683137_57684997_57685230_57688127_57688199_57692917_57693005_57710431_57710532_57713499_57713587_57715347_57715535_57717353_57717463_57718113_57718265_57718852_57718969_57725028_57725082_57726348_57726415_57733629
ENSMUSG00000040040.17_3	chr14	+	3131	26	NIC	ENSMUSG00000040040.17	novel	3088	26	NA	NA	6	-1	combination_of_known_junctions	TRUE	canonical	1	1	junction_3	13.7506945279139	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCTGAGGCTAATGACTT	NA	False	NA	12	True	AATAAA	-14	NA	57661524	57755392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_57661645_57667994_57668091_57672251_57672315_57674633_57674741_57675698_57675753_57676322_57676387_57677162_57677233_57678387_57678479_57679334_57679440_57681811_57681915_57683021_57683137_57684997_57685230_57688127_57688199_57692917_57693005_57710431_57710532_57713499_57713587_57715347_57715535_57717353_57717463_57718113_57718265_57718852_57718969_57725028_57725082_57726348_57726415_57733629_57733737_57744661_57744729_57754437_57754549_57754793
ENSMUSG00000040043.18_0	chr10	-	1486	13	FSM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	-130	125	-130	92	multi-exon	FALSE	canonical	3	274	junction_9	21.4048281157936	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAAGTTTCTTGCTTTG	NA	False	NA	-5	True	AAAAAG	-18	NA	128012478	127969100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
ENSMUSG00000040043.18_13	chr10	-	2430	1	Genic_Genomic	ENSMUSG00000040043.18	novel	NA	NA	NA	NA	2335	2087	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTAGTGTCATCCATGG	NA	False	NA	-3	True	AATAAA	-14	NA	127967769	127965339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_127965300_127967800
ENSMUSG00000040044.12_4	chr4	-	2259	20	FSM	ENSMUSG00000040044.12	ENSMUST00000048706.10	2300	20	37	4	2	-4	multi-exon	FALSE	canonical	3	324	junction_6	85.9268193438375	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATACATTGCTTCATTCT	1	True	NA	-21	True	CATAAA	-17	NA	34614907	34570799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
ENSMUSG00000040044.12_7	chr4	-	2255	20	FSM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	7	4	-2	-4	multi-exon	FALSE	canonical	3	292	junction_6	92.190426792828	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATACATTGCTTCATTCT	2	True	NA	-21	True	CATAAA	-17	NA	34614906	34570799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
ENSMUSG00000040048.15_0	chr17	-	652	4	FSM	ENSMUSG00000040048.15	ENSMUST00000045602.9	732	4	75	5	-9	-5	multi-exon	FALSE	canonical	3	2001	junction_1	127.206743357243	524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTGTTTCTGGTGA	NA	False	NA	NA	False	AATAAA	-17	NA	24943377	24941038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24941195_24941354_24941495_24941628_24941768_24943160
ENSMUSG00000040054.18_114	chr10	+	5141	13	ISM	ENSMUSG00000040054.18	ENSMUST00000045621.9	8369	30	29071	8	25474	-7	3prime_fragment	FALSE	canonical	3	377	junction_10	71.9673923075969	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAGACTCAAGATTGCA	NA	False	NA	-8	True	AATAAA	-12	NA	127957722	127965164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
ENSMUSG00000040054.18_123	chr10	+	4613	10	ISM	ENSMUSG00000040054.18	ENSMUST00000045621.9	8369	30	30439	6	26842	-5	3prime_fragment	FALSE	canonical	3	377	junction_7	76.2405225844538	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGACTCAAGATTGCATG	NA	False	NA	-6	True	AATAAA	-14	NA	127959090	127965166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
ENSMUSG00000040054.18_137	chr10	+	3497	6	ISM	ENSMUSG00000040054.18	ENSMUST00000045621.9	8369	30	32261	6	28664	-5	3prime_fragment	FALSE	canonical	3	377	junction_3	88.6760396048448	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGACTCAAGATTGCATG	NA	False	NA	-6	True	AATAAA	-14	NA	127960912	127965166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
ENSMUSG00000040054.18_143	chr10	+	2980	3	ISM	ENSMUSG00000040054.18	ENSMUST00000045621.9	8369	30	33333	6	29736	-5	3prime_fragment	FALSE	canonical	3	527	junction_1	60.5	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGACTCAAGATTGCATG	447	False	NA	-6	True	AATAAA	-14	NA	127961984	127965166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127962111_127962194_127962339_127962456
ENSMUSG00000040054.18_145	chr10	+	2090	1	ISM	ENSMUSG00000040054.18	ENSMUST00000238829.2	8411	29	35624	8	30826	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAGACTCAAGATTGCA	1537	False	NA	-8	True	AATAAA	-12	NA	127963074	127965164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127963100_127965200
ENSMUSG00000040054.18_23	chr10	+	8384	29	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	505	-7	at_least_one_novel_splicesite	FALSE	canonical	3	275	junction_3	79.9461553490976	171	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAGACTCAAGATTGCA	NA	False	NA	-8	True	AATAAA	-12	NA	127932753	127965164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_127932930_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
ENSMUSG00000040054.18_26	chr10	+	8386	29	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	506	-7	at_least_one_novel_splicesite	FALSE	canonical	3	115	junction_4	94.4797988882236	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAGACTCAAGATTGCA	NA	False	NA	-8	True	AATAAA	-12	NA	127932754	127965164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_127932930_127944762_127944901_127946623_127947218_127948450_127948637_127949328_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
ENSMUSG00000040084.10_2	chr2	+	3606	23	FSM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	59	3	59	-3	multi-exon	TRUE	canonical	3	422	junction_10	74.3091181573454	1044	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTCTGTTGCTGGCAAT	NA	False	NA	12	True	AATAAA	-13	NA	118428750	118472069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
ENSMUSG00000040093.17_2	chr2	-	3135	5	FSM	ENSMUSG00000040093.17	ENSMUST00000090219.13	4642	5	36	1471	11	4	multi-exon	FALSE	canonical	2	4	junction_1	1.11803398874989	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTCTTGGAGGCAGCTG	NA	False	NA	NA	False	AATAAA	-22	NA	118380132	118360708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_118363141_118375562_118375727_118377196_118377494_118379521_118379652_118380020
ENSMUSG00000040097.17_0	chr17	-	3297	8	NIC	ENSMUSG00000040097.17	novel	2943	7	NA	NA	-27	-10	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	24.7831410768016	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTACAGAGCTGCTGTGT	7578	False	NA	-9	True	AATAAA	-15	NA	23990523	23971776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_23972838_23974627_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23990388
ENSMUSG00000040097.17_13	chr17	-	2564	8	NIC	ENSMUSG00000040097.17	novel	2443	7	NA	NA	-33	-10	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	46.0230643154016	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATGCAAATAATGTT	7572	False	NA	NA	False	AATATA	-10	NA	23990529	23974403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23989208_23989307_23990388
ENSMUSG00000040097.17_14	chr17	-	2458	7	FSM	ENSMUSG00000040097.17	ENSMUST00000086325.13	2443	7	-25	10	-25	-10	multi-exon	FALSE	canonical	3	77	junction_6	22.386131619574	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATGCAAATAATGTT	7580	False	NA	NA	False	AATATA	-10	NA	23990521	23974403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23990388
ENSMUSG00000040097.17_2	chr17	-	1547	3	FSM	ENSMUSG00000040097.17	ENSMUST00000227733.2	729	3	185	-1003	185	-5	multi-exon	FALSE	canonical	3	72	junction_1	32	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGCTGCTGTGTGTCAG	4862	False	NA	-4	True	AATAAA	-20	NA	23975710	23971771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23972838_23974627_23974919_23975520
ENSMUSG00000040097.17_6	chr17	-	4495	8	NIC	ENSMUSG00000040097.17	novel	2943	7	NA	NA	35	-10	intron_retention	FALSE	canonical	3	22	junction_7	37.8034659894609	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTACAGAGCTGCTGTGT	7560	False	NA	-9	True	AATAAA	-15	NA	23990541	23971776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_23972838_23974627_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23989208
ENSMUSG00000040097.17_8	chr17	-	3402	9	NIC	ENSMUSG00000040097.17	novel	2943	7	NA	NA	-34	-10	combination_of_known_junctions	FALSE	canonical	3	21	junction_8	43.4667617266343	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTACAGAGCTGCTGTGT	7571	False	NA	-9	True	AATAAA	-15	NA	23990530	23971776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_23972838_23974627_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23989208_23989307_23990388
ENSMUSG00000040097.17_9	chr17	-	2114	5	ISM	ENSMUSG00000040097.17	ENSMUST00000227120.2	2943	7	2252	7	2252	-7	3prime_fragment	FALSE	canonical	3	72	junction_1	28.4813535492961	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAGAGCTGCTGTGTGTC	761	False	NA	-6	True	AATAAA	-18	NA	23979811	23971773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_23972838_23974627_23974919_23975520_23975785_23979177_23979442_23979580
ENSMUSG00000040102.11_0	chr6	+	3259	3	FSM	ENSMUSG00000040102.11	ENSMUST00000036003.8	6267	3	122	2886	122	-703	multi-exon	FALSE	canonical	3	50	junction_2	10.5	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGTTTAGAATCTCTGCT	NA	False	NA	NA	False	TATAAA	-15	NA	146992998	147011390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_146993866_147003063_147003258_147009192
ENSMUSG00000040102.11_9	chr6	+	2960	1	ISM	ENSMUSG00000040102.11	ENSMUST00000036003.8	6267	3	18437	3	1723	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTGATGTGTGTGTGG	NA	False	NA	NA	False	AATAAA	-14	NA	147011313	147014273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_147011300_147014300
ENSMUSG00000040105.4_0	chr19	+	2845	1	FSM	ENSMUSG00000040105.4	ENSMUST00000045674.4	2859	1	-9	23	-9	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTGAATGATATGAGGTG	NA	False	NA	NA	False	AATAAA	-12	NA	28941343	28944188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_28941300_28944200
ENSMUSG00000040111.18_0	chr9	-	2369	18	ISM	ENSMUSG00000040111.18	ENSMUST00000216821.2	7445	19	42664	4669	-229	-29	3prime_fragment	FALSE	canonical	3	12	junction_6	4.94957269834415	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATAAATATATATTATAT	NA	False	NA	NA	False	AATACA	-43	NA	40245053	40209200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_40209376_40210897_40211016_40211284_40211393_40214793_40214885_40215618_40215823_40216361_40216466_40217627_40217771_40218035_40218155_40219151_40219296_40219588_40219779_40221193_40221351_40223053_40223170_40226262_40226344_40226983_40227080_40228160_40228265_40228804_40228890_40238713_40238735_40244740
ENSMUSG00000040111.18_1	chr9	-	2600	1	NIC	ENSMUSG00000040111.18	novel	2667	12	NA	NA	11153	2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATAAATGGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-22	NA	40207138	40204538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_40204500_40207100
ENSMUSG00000040111.18_2	chr9	-	5992	10	ISM	ENSMUSG00000040111.18	ENSMUST00000216821.2	7445	19	68003	9	-1423	0	3prime_fragment	FALSE	canonical	3	12	junction_6	6.01438604565527	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATAATAAATGGTGTGT	NA	False	NA	NA	False	ATTAAA	-20	NA	40219714	40204540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_40209376_40210897_40211016_40211284_40211393_40214793_40214885_40215618_40215823_40216361_40216466_40217627_40217771_40218035_40218155_40219151_40219296_40219588
ENSMUSG00000040111.18_20	chr9	-	3378	20	FSM	ENSMUSG00000040111.18	ENSMUST00000045682.7	7488	20	-565	4675	-565	-32	multi-exon	FALSE	canonical	0	0	junction_19	6.66532765869645	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGAATATAAATATATATTA	9213	False	NA	NA	False	AATACA	-40	NA	40367625	40209203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_40209376_40210897_40211016_40211284_40211393_40214793_40214885_40215618_40215823_40216361_40216466_40217627_40217771_40218035_40218155_40219151_40219296_40219588_40219779_40221193_40221351_40223053_40223170_40226262_40226344_40226983_40227080_40228160_40228265_40228804_40228890_40238713_40238735_40244740_40244952_40324592_40324671_40366589
ENSMUSG00000040111.18_25	chr9	-	5427	6	ISM	ENSMUSG00000040111.18	ENSMUST00000216821.2	7445	19	71291	3	1865	0	3prime_fragment	FALSE	canonical	3	17	junction_5	3.18747549010185	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAATGGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-26	NA	40216426	40204534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_40209376_40210897_40211016_40211284_40211393_40214793_40214885_40215618_40215823_40216361
ENSMUSG00000040111.18_3	chr9	-	2358	19	NNC	ENSMUSG00000040111.18	novel	7445	19	NA	NA	-300	-24	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_18	6.45975193499939	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATATATTATATACAGA	NA	False	NA	NA	False	NA	NA	NA	40245124	40209195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_40209376_40210897_40211016_40211284_40211393_40214793_40214885_40215618_40215823_40216361_40216466_40217627_40217771_40218035_40218155_40219151_40219296_40219588_40219779_40221193_40221351_40223053_40223170_40226262_40226344_40226983_40227080_40228160_40228265_40228804_40228890_40238713_40238735_40244740_40244952_40245038
ENSMUSG00000040112.10_0	chr6	+	1061	8	FSM	ENSMUSG00000040112.10	ENSMUST00000036111.10	4162	8	9	3092	9	0	multi-exon	FALSE	canonical	3	595	junction_4	51.0230040155958	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTATTGTCTTACGTCA	NA	False	NA	12	True	TATAAA	-14	NA	146944270	146972397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_146944399_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
ENSMUSG00000040113.15_0	chr1	-	1868	4	FSM	ENSMUSG00000040113.15	ENSMUST00000159679.8	1790	4	99	-177	99	177	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGGAAAAAATGAAATTC	NA	False	NA	NA	False	AATAAA	-18	NA	163552702	163529647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_163530858_163531571_163531822_163544651_163544828_163552470
ENSMUSG00000040118.16_5	chr5	+	2754	1	ISM	ENSMUSG00000040118.16	ENSMUST00000167946.9	7436	39	437065	2	10361	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTGGAGTTTTGCCTTT	NA	False	NA	NA	False	AATAAA	-24	NA	16576753	16579507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_16576800_16579500
ENSMUSG00000040123.18_0	chr14	-	3190	1	ISM	ENSMUSG00000040123.18	ENSMUST00000039812.16	5290	8	17920	22	17668	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTCCTTTTATTGCTGA	NA	False	NA	-32	True	AATAAA	-9	NA	57031253	57028063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_57028100_57031300
ENSMUSG00000040123.18_10	chr14	-	2853	7	NIC	ENSMUSG00000040123.18	novel	5357	8	NA	NA	20	376	combination_of_known_splicesites	FALSE	canonical	1	1	junction_6	28.8963665535998	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCTAAAAAAAAATTTCTT	9093	False	NA	-28	True	NA	NA	NA	57048901	57030408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048790
ENSMUSG00000040123.18_11	chr14	-	3859	7	NIC	ENSMUSG00000040123.18	novel	5351	8	NA	NA	-6	404	intron_retention	FALSE	canonical	3	22	junction_5	25.7983634278525	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTATTTTTGTTTTCTTGT	8834	False	NA	0	True	NA	NA	NA	57049160	57030380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_57031958_57034060_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048196_57048317_57049048
ENSMUSG00000040123.18_14	chr14	-	3000	8	FSM	ENSMUSG00000040123.18	ENSMUST00000173954.3	5357	8	19	2338	19	402	multi-exon	FALSE	canonical	2	5	junction_7	29.0123126571166	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTATTTTTGTTTTCTT	9092	False	NA	-2	True	NA	NA	NA	57048902	57030382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048196_57048317_57048790
ENSMUSG00000040123.18_3	chr14	-	3000	8	FSM	ENSMUSG00000040123.18	ENSMUST00000111285.9	5351	8	13	2338	-6	402	multi-exon	FALSE	canonical	3	22	junction_6	24.4798959581623	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTATTTTTGTTTTCTT	8834	False	NA	-2	True	NA	NA	NA	57049160	57030382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048196_57048317_57049048
ENSMUSG00000040123.18_4	chr14	-	2883	7	NIC	ENSMUSG00000040123.18	novel	5290	8	NA	NA	-9	402	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTATTTTTGTTTTCTT	8831	False	NA	-2	True	NA	NA	NA	57049163	57030382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
ENSMUSG00000040123.18_9	chr14	-	3739	6	NIC	ENSMUSG00000040123.18	novel	2455	7	NA	NA	-6	404	intron_retention	FALSE	canonical	3	42	junction_5	17.1464281994822	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTATTTTTGTTTTCTTGT	8834	False	NA	0	True	NA	NA	NA	57049160	57030380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_57031958_57034060_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
ENSMUSG00000040124.6_0	chr1	-	2514	5	FSM	ENSMUSG00000040124.6	ENSMUST00000045138.6	2538	5	23	1	10	-1	multi-exon	FALSE	canonical	3	58	junction_3	10.1827059272082	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTATGGTCTGTCATTTA	NA	False	NA	-2	True	AATAAA	-17	NA	163231215	163212477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_163214267_163219978_163220120_163222159_163222262_163224380_163224739_163231091
ENSMUSG00000040124.6_1	chr1	-	2527	5	NIC	ENSMUSG00000040124.6	novel	2663	6	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	29.2179311382582	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTATGGTCTGTCATTTA	NA	False	NA	-2	True	AATAAA	-17	NA	163231224	163212477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_163214267_163219978_163220120_163222159_163222262_163224376_163224739_163231091
ENSMUSG00000040124.6_7	chr1	-	4580	4	NIC	ENSMUSG00000040124.6	novel	2663	6	NA	NA	1	-1	intron_retention	FALSE	canonical	3	10	junction_2	33.436506994601	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTATGGTCTGTCATTTA	NA	False	NA	-2	True	AATAAA	-17	NA	163231237	163212477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_163214267_163219978_163222262_163224376_163224739_163231091
ENSMUSG00000040127.14_0	chr10	+	2335	3	FSM	ENSMUSG00000040127.14	ENSMUST00000149849.2	817	3	-105	-1413	-105	0	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCAAAATGTTTTTAG	NA	False	NA	NA	False	AATAAA	-19	NA	127739177	127747619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127739343_127739446_127739611_127745613
ENSMUSG00000040128.10_0	chr4	-	1638	2	FSM	ENSMUSG00000040128.10	ENSMUST00000049357.10	1648	2	2	8	2	-8	multi-exon	FALSE	canonical	3	146	junction_1	0	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGGTAGTCTTGGCTTTT	1	True	NA	-6	True	TTTAAA	-30	NA	33248508	33245430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_33246508_33247947
ENSMUSG00000040128.10_1	chr4	-	2154	1	NIC	ENSMUSG00000040128.10	novel	1648	2	NA	NA	-11	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGGTAGTCTTGGCTT	0	True	NA	-8	True	TTTAAA	-28	NA	33247586	33245432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_33245400_33247600
ENSMUSG00000040139.15_0	chr7	-	1108	4	FSM	ENSMUSG00000040139.15	ENSMUST00000068996.13	1126	4	18	0	-9	0	multi-exon	FALSE	canonical	3	160	junction_1	38.0292285252044	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012473	136977302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_136978081_136989099_136989163_136989268_136989431_137012368
ENSMUSG00000040139.15_1	chr7	-	874	2	FSM	ENSMUSG00000040139.15	ENSMUST00000145881.8	895	2	21	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012464	136977302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_136978081_137012368
ENSMUSG00000040139.15_4	chr7	-	1271	5	FSM	ENSMUSG00000040139.15	ENSMUST00000117404.8	699	5	-9	-563	-9	0	multi-exon	FALSE	canonical	3	25	junction_1	88.1373218336024	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012473	136977302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_136978081_136978683_136978847_136989099_136989163_136989268_136989431_137012368
ENSMUSG00000040151.10_0	chr3	-	3441	1	ISM	ENSMUSG00000040151.10	ENSMUST00000043325.9	6177	7	137034	1	136734	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGTGTAGTAGTATGCG	NA	False	NA	NA	False	AATAAA	-14	NA	144138908	144135467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_144135500_144138900
ENSMUSG00000040151.10_1	chr3	-	4187	7	FSM	ENSMUSG00000040151.10	ENSMUST00000043325.9	6177	7	16	1974	-7	-1974	multi-exon	FALSE	canonical	3	89	junction_1	15.667553166408	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTTAACGATAATGTCAA	NA	False	NA	NA	False	AGTAAA	-18	NA	144275926	144137440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_144140476_144141222_144141381_144143355_144143454_144153030_144153170_144159712_144159799_144170807_144171047_144275494
ENSMUSG00000040151.10_4	chr3	-	2421	7	NNC	ENSMUSG00000040151.10	novel	6177	7	NA	NA	-3	-3739	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	40.4831926716371	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGGTATTTCTCGTTT	NA	False	NA	-9	True	AGTAAA	-20	NA	144275922	144139205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_144140479_144141222_144141381_144143355_144143454_144153030_144153170_144159712_144159799_144170807_144171047_144275494
ENSMUSG00000040158.13_0	chr11	+	1247	4	FSM	ENSMUSG00000040158.13	ENSMUST00000040687.12	1523	4	168	108	0	-3	multi-exon	FALSE	canonical	3	98	junction_1	3.09120616516523	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAGGGGTTTCTGTTAG	4376	False	NA	NA	False	AATAAA	-13	NA	73068076	73072870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_73068169_73071214_73071335_73071556_73071635_73071913
ENSMUSG00000040164.4_0	chr2	-	2298	2	ISM	ENSMUSG00000040164.4	ENSMUST00000045196.4	2712	4	2399	2	2399	-2	3prime_fragment	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTTTGGTCATGCTTTT	NA	False	NA	NA	False	NA	NA	NA	164010634	164005540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_164006936_164009731
ENSMUSG00000040167.17_0	chr7	-	4405	4	FSM	ENSMUSG00000040167.17	ENSMUST00000046306.15	4430	4	22	3	-2	-3	multi-exon	TRUE	canonical	3	63	junction_1	6.97614984548545	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGACTTTTGTTTTTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	131012228	130990383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_130994310_130995483_130995667_130998397_130998581_131012115
ENSMUSG00000040167.17_1	chr7	-	3948	4	FSM	ENSMUSG00000040167.17	ENSMUST00000121033.8	2231	4	-4	-1713	-4	-3	multi-exon	FALSE	canonical	2	3	junction_1	34.7658836600865	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGACTTTTGTTTTTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	131012230	130990383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_130993851_130995483_130995667_130998397_130998581_131012115
ENSMUSG00000040167.17_2	chr7	-	5580	3	NIC	ENSMUSG00000040167.17	novel	4430	4	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	73	junction_1	3.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGACTTTTGTTTTTTTTT	NA	False	NA	-4	True	AATAAA	-15	NA	131012228	130990382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_130995667_130998397_130998581_131012115
ENSMUSG00000040167.17_3	chr7	-	2815	1	FSM	ENSMUSG00000040167.17	ENSMUST00000208966.2	2470	1	2189	-2534	2189	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGACTTTTGTTTTTTTTT	5254	False	NA	-4	True	AATAAA	-15	NA	130993197	130990382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_130990400_130993200
ENSMUSG00000040174.15_1	chr2	-	1162	9	ISM	ENSMUSG00000040174.15	ENSMUST00000040005.13	1228	10	2160	-4	1861	4	3prime_fragment	FALSE	canonical	3	71	junction_3	31.9726445574963	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATTTGATCCAAAAGCTT	NA	False	NA	-3	True	ATTAAA	-24	NA	93838915	93810977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787
ENSMUSG00000040174.15_14	chr2	-	1654	10	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-4	2	intron_retention	FALSE	canonical	3	58	junction_9	37.2253730009751	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGATTTGATCCAAAAGC	8871	False	NA	-5	True	ATTAAA	-22	NA	93841079	93810979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607
ENSMUSG00000040174.15_2	chr2	-	1380	11	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-4	2	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	43.1723291009415	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGATTTGATCCAAAAGC	8871	False	NA	-5	True	ATTAAA	-22	NA	93841079	93810979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
ENSMUSG00000040174.15_25	chr2	-	1143	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	40.6799628195504	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8871	False	NA	-7	True	ATTAAA	-20	NA	93841079	93810981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
ENSMUSG00000040174.15_26	chr2	-	3227	8	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	2	2	intron_retention	FALSE	canonical	3	37	junction_3	43.486333766941	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGATTTGATCCAAAAGC	8855	False	NA	-5	True	ATTAAA	-22	NA	93841095	93810979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93837227_93838383_93838488_93838787_93838938_93841027
ENSMUSG00000040174.15_32	chr2	-	2856	6	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	7	-4454	intron_retention	FALSE	canonical	3	87	junction_5	27.459060435492	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	8860	False	NA	NA	False	NA	NA	NA	93841090	93831045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
ENSMUSG00000040174.15_7	chr2	-	1252	10	FSM	ENSMUSG00000040174.15	ENSMUST00000040005.13	1228	10	-24	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	32.7210431781547	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8851	False	NA	-7	True	ATTAAA	-20	NA	93841099	93810981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
ENSMUSG00000040174.15_8	chr2	-	1289	10	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	49.5186708770752	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8871	False	NA	-7	True	ATTAAA	-20	NA	93841079	93810981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
ENSMUSG00000040174.15_9	chr2	-	1894	3	ISM	ENSMUSG00000040174.15	ENSMUST00000040005.13	1228	10	13096	-2	7553	2	3prime_fragment	FALSE	canonical	3	131	junction_2	17	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGATTTGATCCAAAAGC	NA	False	NA	-5	True	ATTAAA	-22	NA	93827979	93810979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_93811323_93811860_93811960_93826527
ENSMUSG00000040177.11_11	chr7	-	1745	6	NIC	ENSMUSG00000040177.11	novel	6773	6	NA	NA	-2	-11	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	33.5463857963865	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAAAAGTAATAAGATATT	NA	False	NA	NA	False	AATATA	-14	NA	130964441	130944925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_130945534_130952379_130952832_130959188_130959396_130962617_130962691_130963461_130963662_130964236
ENSMUSG00000040177.11_12	chr7	-	3562	5	ISM	ENSMUSG00000040177.11	ENSMUST00000208526.2	3703	6	1	5027	1	2716	5prime_fragment	FALSE	canonical	3	85	junction_4	3.96074487943871	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAGTGTCTAATGTGTG	NA	False	NA	NA	False	NA	NA	NA	130964424	130949941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_130952832_130959188_130959396_130962617_130962691_130963461_130963666_130964236
ENSMUSG00000040177.11_6	chr7	-	1743	6	FSM	ENSMUSG00000040177.11	ENSMUST00000059438.11	6773	6	62	4968	-1	-2	multi-exon	FALSE	canonical	3	85	junction_5	3.61109401705356	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGATATTTGGTTTTTT	NA	False	NA	NA	False	AATATA	-23	NA	130964426	130944916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_130945534_130952379_130952832_130959188_130959396_130962617_130962691_130963461_130963666_130964236
ENSMUSG00000040177.11_8	chr7	-	1672	5	NIC	ENSMUSG00000040177.11	novel	6773	6	NA	NA	5	-8	combination_of_known_splicesites	FALSE	canonical	2	2	junction_3	36.9932426261878	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTAATAAGATATTTGG	NA	False	NA	NA	False	AATATA	-17	NA	130964434	130944922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_130945534_130952379_130952832_130959188_130959396_130963461_130963666_130964236
ENSMUSG00000040183.14_0	chr4	-	4458	16	FSM	ENSMUSG00000040183.14	ENSMUST00000084750.8	4444	16	-16	2	-1	-2	multi-exon	FALSE	canonical	2	12	junction_10	6.1369554521947	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTAGTATTCTACTTTT	-3	True	NA	-9	True	ATTAAA	-14	NA	32950842	32804036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_32806643_32808683_32808811_32810197_32810312_32815234_32815388_32816910_32817097_32817418_32817551_32818604_32818710_32821256_32821335_32822152_32822252_32823405_32823505_32824395_32824495_32827088_32827188_32828709_32828809_32836334_32836434_32860321_32860589_32950746
ENSMUSG00000040183.14_20	chr4	-	4420	15	NIC	ENSMUSG00000040183.14	novel	4683	17	NA	NA	4	4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	8.03214206313913	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTCTACTTTTTAGTCA	72	False	NA	-3	True	ATTAAA	-20	NA	32923451	32804030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_32806643_32808683_32808811_32810197_32810312_32815234_32815388_32816910_32817097_32817418_32817551_32818604_32818710_32821256_32821335_32822152_32822252_32823405_32823505_32827088_32827188_32828709_32828809_32836334_32836434_32860321_32860589_32923300
ENSMUSG00000040183.14_6	chr4	-	4347	15	NIC	ENSMUSG00000040183.14	novel	4444	16	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_10	6.30678287275546	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAGTATTCTACTTTTTA	11	True	NA	-7	True	ATTAAA	-16	NA	32950828	32804034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_32806643_32808683_32808811_32810197_32810312_32815234_32815388_32816910_32817097_32817418_32817551_32818604_32818710_32821256_32821335_32822152_32822252_32823405_32823505_32827088_32827188_32828709_32828809_32836334_32836434_32860321_32860589_32950746
ENSMUSG00000040183.14_8	chr4	-	4591	16	FSM	ENSMUSG00000040183.14	ENSMUST00000084749.8	4573	16	-20	2	-20	-2	multi-exon	FALSE	canonical	0	0	junction_15	7.75857948052062	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTAGTATTCTACTTTT	-2	True	NA	-9	True	ATTAAA	-14	NA	32923525	32804036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_32806643_32808683_32808811_32810197_32810312_32815234_32815388_32816910_32817097_32817418_32817551_32818604_32818710_32821256_32821335_32822152_32822252_32823405_32823505_32824395_32824495_32827088_32827188_32828709_32828809_32836334_32836434_32860321_32860589_32923296
ENSMUSG00000040187.16_2	chr6	+	2131	9	ISM	ENSMUSG00000040187.16	ENSMUST00000129788.8	1664	15	14888	-876	-13	0	3prime_fragment	FALSE	canonical	0	0	junction_7	1.49478259288767	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTCTGCCTATTTGCCT	NA	False	NA	NA	False	NA	NA	NA	146721915	146735020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_146722167_146723407_146723649_146724086_146724194_146724591_146724743_146726664_146726727_146728713_146728823_146729596_146729685_146731190_146731300_146734007
ENSMUSG00000040188.11_0	chr9	+	2321	9	FSM	ENSMUSG00000040188.11	ENSMUST00000045791.11	2340	9	16	3	1	-3	multi-exon	TRUE	canonical	3	243	junction_4	15.3927742788621	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCACTGGCCCTGATGTC	NA	False	NA	10	True	AATAAA	-12	NA	57468241	57496075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
ENSMUSG00000040188.11_1	chr9	+	2450	10	NIC	ENSMUSG00000040188.11	novel	2340	9	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	4	junction_3	104.968190360958	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCACTGGCCCTGATGTC	NA	False	NA	10	True	AATAAA	-12	NA	57468241	57496075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_57468394_57484475_57484545_57484921_57485021_57485556_57485686_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
ENSMUSG00000040189.19_1	chr7	+	1903	6	ISM	ENSMUSG00000040189.19	ENSMUST00000210039.3	2598	15	0	11182	0	6168	5prime_fragment	FALSE	canonical	3	18	junction_1	2.78567765543682	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTAATTGTGTGCAT	3132	False	NA	NA	False	AAGAAA	-16	NA	45573638	45587205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45573811_45573921_45574014_45577947_45578048_45578490_45578681_45585694_45585818_45585979
ENSMUSG00000040189.19_11	chr7	+	2583	15	FSM	ENSMUSG00000040189.19	ENSMUST00000210039.3	2598	15	13	2	12	-2	multi-exon	FALSE	canonical	3	7	junction_9	4.94923205752	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGGTTCCTACAAGTG	3145	False	NA	10	True	AATAAA	-21	NA	45573651	45598385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45573811_45573921_45574014_45577947_45578048_45578490_45578681_45585694_45585818_45585979_45586094_45589078_45589147_45591083_45591272_45591482_45591618_45592001_45592085_45592184_45592354_45596806_45596971_45597046_45597145_45597405_45597485_45597564
ENSMUSG00000040189.19_12	chr7	+	2679	14	NIC	ENSMUSG00000040189.19	novel	2598	15	NA	NA	-7	-2	intron_retention	FALSE	canonical	3	7	junction_8	5.10133988664285	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCCAAGCCTGGTTCCT	3153	False	NA	3	True	AATAAA	-14	NA	45573659	45598378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45574014_45577947_45578048_45578490_45578681_45585694_45585818_45585979_45586094_45589078_45589147_45591083_45591272_45591482_45591618_45592001_45592085_45592184_45592354_45596806_45596971_45597046_45597145_45597405_45597485_45597564
ENSMUSG00000040189.19_16	chr7	+	2620	11	NIC	ENSMUSG00000040189.19	novel	2460	13	NA	NA	661	-2	intron_retention	FALSE	canonical	3	16	junction_3	3.7	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGGTTCCTACAAGTG	3213	False	NA	10	True	AATAAA	-21	NA	45578486	45598385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45578681_45585694_45585818_45585979_45586094_45589078_45589147_45591083_45591272_45591482_45592085_45592184_45592354_45596806_45596971_45597046_45597145_45597405_45597485_45597564
ENSMUSG00000040189.19_17	chr7	+	2233	12	ISM	ENSMUSG00000040189.19	ENSMUST00000038720.8	2453	13	663	0	659	0	3prime_fragment	FALSE	canonical	3	7	junction_6	5.33040553246147	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAAGCCTGGTTCCTAC	3211	False	NA	5	True	AATAAA	-16	NA	45578484	45598380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45578681_45585694_45585818_45585979_45586094_45589078_45589147_45591083_45591272_45591482_45591618_45592001_45592085_45592184_45592354_45596806_45596971_45597046_45597145_45597405_45597485_45597564
ENSMUSG00000040189.19_7	chr7	+	2968	14	NIC	ENSMUSG00000040189.19	novel	2598	15	NA	NA	11	-2	intron_retention	FALSE	canonical	3	16	junction_6	3.49640559303493	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGGTTCCTACAAGTG	3144	False	NA	10	True	AATAAA	-21	NA	45573650	45598385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45573811_45573921_45574014_45577947_45578048_45578490_45578681_45585694_45585818_45585979_45586094_45589078_45589147_45591083_45591272_45591482_45592085_45592184_45592354_45596806_45596971_45597046_45597145_45597405_45597485_45597564
ENSMUSG00000040189.19_8	chr7	+	2641	2	NNC	ENSMUSG00000040189.19	novel	1078	5	NA	NA	1	2992	intron_retention	FALSE	canonical	3	12	junction_1	0	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCTTGGTCATGG	3134	False	NA	NA	False	NA	NA	NA	45573640	45577483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_45574014_45575215
ENSMUSG00000040195.12_23	chr10	+	3100	1	ISM	ENSMUSG00000040195.12	ENSMUST00000048099.5	6002	9	20882	2	20882	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTAGTCTTTTTAAATT	NA	False	NA	14	True	AATAAA	-14	NA	127533816	127536916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127533800_127536900
ENSMUSG00000040195.12_4	chr10	+	5985	9	FSM	ENSMUSG00000040195.12	ENSMUST00000048099.5	6002	9	14	3	14	-3	multi-exon	FALSE	canonical	3	115	junction_7	22.4499443206436	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAGTAGTCTTTTTAAAT	NA	False	NA	13	True	AATAAA	-13	NA	127512948	127536915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297_127530524_127531237_127531412_127532096
ENSMUSG00000040195.12_5	chr10	+	5836	9	NNC	ENSMUSG00000040195.12	novel	6002	9	NA	NA	14	-6	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_3	43.8461443572864	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTATAGTAGTCTTTTTA	NA	False	NA	10	True	AATAAA	-10	NA	127512948	127536912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_127513097_127524101_127524218_127525093_127525168_127526729_127526803_127528836_127528931_127529352_127529468_127530297_127530524_127531237_127531412_127532096
ENSMUSG00000040195.12_6	chr10	+	1501	7	FSM	ENSMUSG00000040195.12	ENSMUST00000118612.8	1522	7	15	6	13	-6	multi-exon	TRUE	canonical	3	127	junction_4	19.2411595862157	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATAAGTGAGTTTGAC	NA	False	NA	NA	False	AATAAA	-17	NA	127512947	127531031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297
ENSMUSG00000040204.7_0	chr9	+	913	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	125	1150	0	-1150	multi-exon	FALSE	canonical	3	794	junction_3	40.4722126896961	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAAGTAAAATCTCTTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	65797643	65809398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
ENSMUSG00000040204.7_4	chr9	+	2277	5	NNC	ENSMUSG00000040204.7	novel	2188	4	NA	NA	0	278	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	367.570656473011	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATGAATATTTGGCCTG	NA	False	NA	9	True	AATAAA	-19	NA	65797643	65810826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839_65810552_65810615
ENSMUSG00000040209.13_0	chr3	-	4809	1	ISM	ENSMUSG00000040209.13	ENSMUST00000041124.13	13834	9	178252	5	9203	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATCTGCTTCTATCTGG	NA	False	NA	-14	True	AATAAA	-10	NA	9496893	9492084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_9492100_9496900
ENSMUSG00000040209.13_2	chr3	-	3728	1	ISM	ENSMUSG00000040209.13	ENSMUST00000041124.13	13834	9	172254	7084	3205	4188	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGAGACATGACACTTTT	NA	False	NA	NA	False	AATACA	-15	NA	9502891	9499163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_9499200_9502900
ENSMUSG00000040209.13_3	chr3	-	2577	9	FSM	ENSMUSG00000040209.13	ENSMUST00000041124.13	13834	9	-23	11280	-23	-8	multi-exon	FALSE	canonical	3	267	junction_2	34.7697785440172	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAAAGAGTTTTTCTAT	NA	False	NA	-23	True	NA	NA	NA	9675168	9503359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_9503959_9504844_9504943_9511019_9511125_9512334_9512603_9517323_9517425_9535951_9536179_9539558_9539663_9630123_9630360_9674329
ENSMUSG00000040212.13_1	chr7	-	623	5	FSM	ENSMUSG00000040212.13	ENSMUST00000038876.13	736	5	108	5	6	0	multi-exon	FALSE	canonical	3	47	junction_4	7.77817459305202	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGACTCGGCTCCTCTT	4466	False	NA	NA	False	AATAAA	-15	NA	45570720	45567451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570665
ENSMUSG00000040212.13_4	chr7	-	331	2	ISM	ENSMUSG00000040212.13	ENSMUST00000210937.2	380	3	685	-160	685	0	3prime_fragment	FALSE	canonical	3	61	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCGGCTCCTCTTCCTTC	6327	False	NA	NA	False	AATAAA	-20	NA	45568859	45567446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45567660_45568741
ENSMUSG00000040213.14_0	chr3	+	1687	14	FSM	ENSMUSG00000040213.14	ENSMUST00000106218.8	1888	14	10	191	10	0	multi-exon	FALSE	canonical	3	81	junction_2	10.4835740777555	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCTCCGTGTTGTACTT	NA	False	NA	21	True	AATACA	-35	NA	142406821	142450097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_142406937_142412449_142412553_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
ENSMUSG00000040213.14_11	chr3	+	1694	13	NNC	ENSMUSG00000040213.14	novel	734	7	NA	NA	-10294	2	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	24.2674622122344	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCGTGTTGTACTTTCTC	NA	False	NA	25	True	AATACA	-39	NA	142418581	142450101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_142418803_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
ENSMUSG00000040213.14_2	chr3	+	1692	14	FSM	ENSMUSG00000040213.14	ENSMUST00000044392.11	4206	14	-17	2531	12	1	multi-exon	FALSE	canonical	3	21	junction_2	23.3184793520062	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCCGTGTTGTACTTTCT	NA	False	NA	24	True	AATACA	-38	NA	142406823	142450100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_142406937_142412449_142412557_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
ENSMUSG00000040213.14_20	chr3	+	1768	13	NIC	ENSMUSG00000040213.14	novel	1888	14	NA	NA	-7	-24	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	27.8910330074421	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATGAAAGAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	142406804	142450264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_142406937_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
ENSMUSG00000040213.14_7	chr3	+	1452	13	ISM	ENSMUSG00000040213.14	ENSMUST00000106218.8	1888	14	-3	6198	-3	-2617	5prime_fragment	FALSE	canonical	3	81	junction_2	10.8895974826131	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATATGCATTTATAGTA	NA	False	NA	NA	False	ATTAAA	-19	NA	142406808	142444090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_142406937_142412449_142412553_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985
ENSMUSG00000040219.5_0	chr9	-	2275	22	FSM	ENSMUSG00000040219.5	ENSMUST00000055096.5	3628	22	48	1305	38	-1305	multi-exon	FALSE	canonical	3	14	junction_3	5.49706167646225	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGGATGTCTGCCGGG	NA	False	NA	-4	True	AATAAA	-23	NA	49397477	49349567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_49349757_49351456_49351683_49353136_49353237_49354401_49354504_49355967_49356037_49356484_49356584_49357041_49357180_49357824_49357886_49359226_49359320_49364623_49364793_49367160_49367250_49368132_49368203_49369295_49369485_49369949_49370011_49371689_49371762_49378071_49378132_49381528_49381651_49382425_49382504_49383161_49383184_49383682_49383844_49395969_49396043_49397445
ENSMUSG00000040220.11_0	chr8	+	1609	11	FSM	ENSMUSG00000040220.11	ENSMUST00000093043.7	1681	11	71	1	-34	-1	multi-exon	FALSE	canonical	3	26	junction_4	6.18789140176199	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCTCTGTCGTTGTGAG	NA	False	NA	6	True	AATGAA	-20	NA	124245643	124263388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124245692_124247342_124247430_124249676_124249875_124250816_124251024_124252357_124252413_124253203_124253410_124254650_124254819_124255116_124255204_124257565_124257776_124259991_124260058_124263111
ENSMUSG00000040220.11_4	chr8	+	1969	1	ISM	ENSMUSG00000040220.11	ENSMUST00000212923.2	3469	10	14580	2	14497	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAATATATTTTGATCAT	NA	False	NA	NA	False	ATTAAA	-10	NA	124260174	124262143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_124260200_124262100
ENSMUSG00000040225.16_0	chr1	-	6233	19	ISM	ENSMUSG00000040225.16	ENSMUST00000182593.8	9022	34	35116	-1095	-173	-6	3prime_fragment	FALSE	canonical	3	53	junction_1	26.8886593194975	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGAGTCTTGGAACT	NA	False	NA	NA	False	AATAAA	-10	NA	162532934	162499362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_162501226_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937
ENSMUSG00000040225.16_1	chr1	-	1575	1	ISM	ENSMUSG00000040225.16	ENSMUST00000182149.8	11289	35	67157	1069	14821	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGAGTCTTGGAACT	NA	False	NA	NA	False	AATAAA	-10	NA	162500937	162499362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_162499400_162500900
ENSMUSG00000040225.16_3	chr1	-	3920	15	ISM	ENSMUSG00000040225.16	ENSMUST00000182149.8	11289	35	47679	1069	-4657	-6	3prime_fragment	FALSE	canonical	3	77	junction_1	24.2706886290977	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGAGTCTTGGAACT	NA	False	NA	NA	False	AATAAA	-10	NA	162520415	162499362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_162501226_162501667_162501721_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304
ENSMUSG00000040225.16_35	chr1	-	3857	14	ISM	ENSMUSG00000040225.16	ENSMUST00000182593.8	9022	34	47645	-1095	-4647	-6	3prime_fragment	FALSE	canonical	3	53	junction_1	27.1996780349897	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGAGTCTTGGAACT	NA	False	NA	NA	False	AATAAA	-10	NA	162520405	162499362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_162501226_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304
ENSMUSG00000040225.16_58	chr1	-	2634	7	ISM	ENSMUSG00000040225.16	ENSMUST00000182149.8	11289	35	60540	1069	8204	-6	3prime_fragment	FALSE	canonical	3	77	junction_1	32.2253350986801	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGAGTCTTGGAACT	NA	False	NA	NA	False	AATAAA	-10	NA	162507554	162499362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_162501226_162501667_162501721_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394
ENSMUSG00000040225.16_8	chr1	-	5705	20	ISM	ENSMUSG00000040225.16	ENSMUST00000182149.8	11289	35	35741	1069	-18	-6	3prime_fragment	FALSE	canonical	3	77	junction_1	24.5768623030854	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGAGTCTTGGAACT	NA	False	NA	NA	False	AATAAA	-10	NA	162532353	162499362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_162501226_162501667_162501721_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937
ENSMUSG00000040231.17_0	chr7	-	930	5	FSM	ENSMUSG00000040231.17	ENSMUST00000039049.16	967	5	32	5	-12	-5	multi-exon	FALSE	canonical	3	25	junction_2	22.466641938661	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCACCCTGTCCTGTCTGT	NA	False	NA	-8	True	AGTAAA	-24	NA	45546106	45536273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45536550_45536790_45536931_45538035_45538274_45545114_45545316_45546031
ENSMUSG00000040231.17_2	chr7	-	820	4	FSM	ENSMUSG00000040231.17	ENSMUST00000120299.4	722	4	-38	-60	6	-1	multi-exon	FALSE	canonical	3	35	junction_1	18.0616229121921	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTGTCCTGTCTGTTCCT	NA	False	NA	-4	True	AGTAAA	-28	NA	45546132	45536269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45536550_45538035_45538274_45545114_45545316_45546031
ENSMUSG00000040234.17_0	chr6	-	3153	12	FSM	ENSMUSG00000040234.17	ENSMUST00000037709.16	3241	12	80	8	-19	-8	multi-exon	FALSE	canonical	3	689	junction_8	114.912830779186	1713	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATGCTTAATGTCCT	NA	False	NA	NA	False	AATAAA	-12	NA	146536015	146503857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372_146523494_146525061_146525213_146527593_146527749_146535883
ENSMUSG00000040236.5_0	chr8	+	703	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	215	1628	4	-1293	multi-exon	FALSE	canonical	3	198	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTGTGTTGTGTCTTGT	NA	False	NA	22	True	GATAAA	-22	NA	3726513	3729627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3726604_3729014
ENSMUSG00000040236.5_2	chr8	+	1995	2	NNC	ENSMUSG00000040236.5	novel	2546	2	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCACCCTTGGCTATTATT	NA	False	NA	10	True	NA	NA	NA	3726509	3730916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_3726603_3729014
ENSMUSG00000040236.5_3	chr8	+	1708	1	FSM	ENSMUSG00000040236.5	ENSMUST00000207787.2	4411	1	2697	6	2697	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCACCCTTGGCTATTA	NA	False	NA	8	True	NA	NA	NA	3729206	3730914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3729200_3730900
ENSMUSG00000040242.15_0	chr6	+	2794	7	FSM	ENSMUSG00000040242.15	ENSMUST00000111663.9	2880	7	78	8	-3	-8	multi-exon	FALSE	canonical	0	0	junction_3	146.964470385041	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGGTCTGGTCTCAGG	NA	False	NA	21	True	AATAAA	-12	NA	146479434	146500688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131_146494246_146496673_146496788_146498792
ENSMUSG00000040242.15_2	chr6	+	897	5	FSM	ENSMUSG00000040242.15	ENSMUST00000058245.5	918	5	15	6	-4	-6	multi-exon	FALSE	canonical	0	0	junction_3	170.445005793658	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGAACGGTGTGCTTTT	NA	False	NA	NA	False	AATAAA	-10	NA	146479433	146494357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131
ENSMUSG00000040242.15_24	chr6	+	2672	2	ISM	ENSMUSG00000040242.15	ENSMUST00000160697.2	600	6	6193	-1859	6193	-8	3prime_fragment	FALSE	canonical	3	226	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGGTCTGGTCTCAGG	NA	False	NA	21	True	AATAAA	-12	NA	146496011	146500688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_146496788_146498792
ENSMUSG00000040242.15_26	chr6	+	1539	1	ISM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	19800	1	9338	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGTCTCAGGGTTAATT	NA	False	NA	28	True	AATAAA	-19	NA	146499156	146500695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_146499200_146500700
ENSMUSG00000040242.15_3	chr6	+	2678	6	FSM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	80	8	-1	-8	multi-exon	FALSE	canonical	0	0	junction_3	164.658434342125	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGGTCTGGTCTCAGG	NA	False	NA	21	True	AATAAA	-12	NA	146479436	146500688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146496673_146496788_146498792
ENSMUSG00000040242.15_7	chr6	+	5203	6	NIC	ENSMUSG00000040242.15	novel	2880	7	NA	NA	14	-8	intron_retention	FALSE	canonical	0	0	junction_3	154.928886912674	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGGTCTGGTCTCAGG	NA	False	NA	21	True	AATAAA	-12	NA	146479453	146500688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131_146496788_146498792
ENSMUSG00000040249.16_10	chr10	-	3259	18	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	74693	33	-3247	-33	3prime_fragment	FALSE	canonical	3	36	junction_15	7.63845670022719	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-6	NA	127382324	127374062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262
ENSMUSG00000040249.16_11	chr10	-	4087	25	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	70501	33	-730	-33	3prime_fragment	FALSE	canonical	3	36	junction_15	8.77723934705871	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-6	NA	127386516	127374062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183_127384317_127384406_127384514_127385185_127385303_127385776_127385903_127386053_127386177_127386475
ENSMUSG00000040249.16_19	chr10	-	2923	20	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	72734	650	1503	-212	3prime_fragment	FALSE	canonical	3	36	junction_15	8.0124556774674	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAGCGAGCAAGCACAGT	NA	False	NA	NA	False	AATGAA	-25	NA	127384283	127374679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183
ENSMUSG00000040249.16_20	chr10	-	3735	22	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	71777	33	546	-33	3prime_fragment	FALSE	canonical	3	36	junction_15	8.45985584970172	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-6	NA	127385240	127374062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183_127384317_127384406_127384514_127385185
ENSMUSG00000040249.16_3	chr10	-	3430	19	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	74202	33	2971	-33	3prime_fragment	FALSE	canonical	3	36	junction_15	8.14623293989996	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-6	NA	127382815	127374062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705
ENSMUSG00000040249.16_4	chr10	-	2555	14	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	76707	33	-1233	-33	3prime_fragment	FALSE	canonical	3	50	junction_6	5.27133590738825	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-6	NA	127380310	127374062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287
ENSMUSG00000040249.16_53	chr10	-	7697	49	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	54545	33	15282	-33	3prime_fragment	FALSE	canonical	2	17	junction_47	14.5552109798061	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-6	NA	127402472	127374062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183_127384317_127384406_127384514_127385185_127385303_127385776_127385903_127386053_127386177_127386475_127386596_127386813_127386931_127387537_127387632_127388029_127388179_127388579_127388769_127389235_127389442_127389560_127389749_127390132_127390253_127390449_127390536_127390816_127391001_127391522_127391714_127391859_127392001_127392078_127392202_127392476_127392606_127392752_127392870_127393062_127393186_127393280_127393431_127393942_127394057_127394404_127394525_127394699_127394829_127394965_127395092_127395836_127396030_127396323_127396529_127399472_127399663_127402325
ENSMUSG00000040249.16_56	chr10	-	5690	35	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	65304	33	-5927	-33	3prime_fragment	FALSE	canonical	3	25	junction_34	11.4567412650904	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-6	NA	127391713	127374062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183_127384317_127384406_127384514_127385185_127385303_127385776_127385903_127386053_127386177_127386475_127386596_127386813_127386931_127387537_127387632_127388029_127388179_127388579_127388769_127389235_127389442_127389560_127389749_127390132_127390253_127390449_127390536_127390816_127391001_127391522
ENSMUSG00000040249.16_59	chr10	-	3014	16	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	75325	33	-2615	-33	3prime_fragment	FALSE	canonical	3	36	junction_15	7.71895214535122	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-6	NA	127381692	127374062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599
ENSMUSG00000040249.16_6	chr10	-	6457	41	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	63589	47	-7642	-47	3prime_fragment	FALSE	canonical	3	22	junction_39	13.3701159306866	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAAATTGTAAAAAA	NA	False	NA	NA	False	ACTAAA	-17	NA	127393428	127374076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183_127384317_127384406_127384514_127385185_127385303_127385776_127385903_127386053_127386177_127386475_127386596_127386813_127386931_127387537_127387632_127388029_127388179_127388579_127388769_127389235_127389442_127389560_127389749_127390132_127390253_127390449_127390536_127390816_127391001_127391522_127391714_127391859_127392001_127392078_127392202_127392476_127392606_127392752_127392870_127393062_127393186_127393280
ENSMUSG00000040249.16_63	chr10	-	7231	47	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	60618	33	-10613	-33	3prime_fragment	FALSE	canonical	3	21	junction_46	14.0788355550454	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-6	NA	127396399	127374062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183_127384317_127384406_127384514_127385185_127385303_127385776_127385903_127386053_127386177_127386475_127386596_127386813_127386931_127387537_127387632_127388029_127388179_127388579_127388769_127389235_127389442_127389560_127389749_127390132_127390253_127390449_127390536_127390816_127391001_127391522_127391714_127391859_127392001_127392078_127392202_127392476_127392606_127392752_127392870_127393062_127393186_127393280_127393431_127393942_127394057_127394404_127394525_127394699_127394829_127394965_127395092_127395836_127396030_127396323
ENSMUSG00000040249.16_7	chr10	-	4814	30	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	67683	33	-3548	-33	3prime_fragment	FALSE	canonical	3	26	junction_28	10.903751440746	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-6	NA	127389334	127374062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183_127384317_127384406_127384514_127385185_127385303_127385776_127385903_127386053_127386177_127386475_127386596_127386813_127386931_127387537_127387632_127388029_127388179_127388579_127388769_127389235
ENSMUSG00000040250.15_0	chr6	-	2976	18	FSM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	74	9	19	0	multi-exon	FALSE	canonical	3	82	junction_2	56.6296167637544	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCAAGTATCGGAGTG	NA	False	NA	-11	True	AATAAA	-17	NA	146479259	146451138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ENSMUSG00000040250.15_11	chr6	-	2870	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	57.4303586420109	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCAAGTATCGGAGTG	NA	False	NA	-11	True	AATAAA	-17	NA	146479277	146451138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456551_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ENSMUSG00000040250.15_2	chr6	-	2899	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	24.9699819783675	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCAAGTATCGGAGTG	NA	False	NA	-11	True	AATAAA	-17	NA	146479260	146451138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ENSMUSG00000040253.16_0	chr3	+	5547	11	FSM	ENSMUSG00000105338.2_ENSMUSG00000040253.16	ENSMUST00000171263.8	2497	11	40	-3090	40	-9	multi-exon	FALSE	canonical	0	0	junction_2	0.489897948556636	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTCTATATGGTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	142236142	142255901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_142236201_142240277_142240474_142242057_142242186_142243772_142243883_142244482_142244680_142247116_142247363_142248609_142248891_142249682_142249896_142251210_142251314_142251622_142251817_142252080
ENSMUSG00000040254.12_0	chr5	+	6379	18	FSM	ENSMUSG00000040254.12	ENSMUST00000030868.11	6307	18	-79	7	-79	-7	multi-exon	FALSE	canonical	0	0	junction_1	0.775935644604289	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAAGTGTTGTTATGTG	NA	False	NA	NA	False	AATAAA	-24	NA	12433272	12638908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_12433642_12497958_12498147_12513182_12513344_12534921_12534985_12547454_12547575_12555769_12555864_12558058_12558188_12574217_12574361_12590983_12591099_12592548_12592619_12603044_12603190_12613115_12613339_12615911_12616001_12618255_12618298_12620940_12621099_12623795_12623861_12627578_12627719_12634843
ENSMUSG00000040258.7_0	chr10	-	1668	2	FSM	ENSMUSG00000040258.7	ENSMUST00000095266.3	1675	2	1	6	1	-6	multi-exon	FALSE	canonical	3	10	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCAATACTCGCCTGTG	128	False	NA	NA	False	AATAAA	-4	NA	127370427	127361347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127362833_127370244
ENSMUSG00000040258.7_1	chr10	-	1308	1	ISM	ENSMUSG00000040258.7	ENSMUST00000095266.3	1675	2	7779	0	7779	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCGCCTGTGTTAAGA	7906	False	NA	NA	False	AATAAA	-10	NA	127362649	127361341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127361300_127362600
ENSMUSG00000040263.17_0	chr8	-	2042	12	FSM	ENSMUSG00000040263.17	ENSMUST00000045884.17	2078	12	17	19	-12	1	multi-exon	FALSE	canonical	3	124	junction_5	29.2453287927892	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTTTCTTTCTTCTACA	453	False	NA	-24	True	AATAAA	-18	NA	122556291	122523070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548018_122548098_122548520_122548613_122556120
ENSMUSG00000040268.18_1	chr7	+	3531	13	NIC	ENSMUSG00000040268.18	novel	3777	13	NA	NA	3	-5	combination_of_known_junctions	FALSE	canonical	3	137	junction_12	38.4154012806785	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACGTCCCCTTTTATTT	NA	False	NA	18	True	AATAAA	-20	NA	130467619	130515037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_130467714_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511359_130512561
ENSMUSG00000040268.18_13	chr7	+	3562	13	NIC	ENSMUSG00000040268.18	novel	3777	13	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	3	18	junction_12	65.7594522145338	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACGTCCCCTTTTATTT	NA	False	NA	18	True	AATAAA	-20	NA	130467618	130515037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_130467714_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511389_130512561
ENSMUSG00000040268.18_18	chr7	+	3510	12	NIC	ENSMUSG00000040268.18	novel	2301	13	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	75.7006937968359	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACGTCCCCTTTTATTT	NA	False	NA	18	True	AATAAA	-20	NA	130467616	130515037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_130467731_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130512561
ENSMUSG00000040268.18_3	chr7	+	3646	13	NIC	ENSMUSG00000040268.18	novel	3777	13	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	31	junction_12	71.3206764472189	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACGTCCCCTTTTATTT	NA	False	NA	18	True	AATAAA	-20	NA	130467628	130515037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_130467731_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511466_130512561
ENSMUSG00000040268.18_5	chr7	+	3540	13	FSM	ENSMUSG00000040268.18	ENSMUST00000075181.11	2301	13	0	-1239	0	-5	multi-exon	FALSE	canonical	3	88	junction_1	52.7225441975884	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACGTCCCCTTTTATTT	NA	False	NA	18	True	AATAAA	-20	NA	130467627	130515037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_130467731_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511359_130512561
ENSMUSG00000040268.18_6	chr7	+	5895	11	FSM	ENSMUSG00000040268.18	ENSMUST00000151119.9	2397	11	-14	-3484	2	3	multi-exon	FALSE	canonical	3	173	junction_1	25.6961086548139	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTCACGTCCCCTTTTAT	NA	False	NA	16	True	AATAAA	-18	NA	130467618	130515035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_130467714_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065
ENSMUSG00000040268.18_8	chr7	+	3639	13	FSM	ENSMUSG00000040268.18	ENSMUST00000120441.8	3777	13	133	5	2	-5	multi-exon	FALSE	canonical	3	31	junction_12	62.5128320160482	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACGTCCCCTTTTATTT	NA	False	NA	18	True	AATAAA	-20	NA	130467618	130515037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_130467714_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511466_130512561
ENSMUSG00000040268.18_81	chr7	+	2078	1	ISM	ENSMUSG00000040268.18	ENSMUST00000120441.8	3777	13	45474	5	5926	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACGTCCCCTTTTATTT	NA	False	NA	18	True	AATAAA	-20	NA	130512959	130515037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_130513000_130515000
ENSMUSG00000040269.6_0	chr3	-	660	3	FSM	ENSMUSG00000040269.6	ENSMUST00000042148.6	783	3	108	15	108	-15	multi-exon	FALSE	canonical	3	890	junction_1	0.5	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTAATCCTGTTCTTCCC	NA	False	NA	-16	True	NA	NA	NA	8988870	8867220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_8867475_8965045_8965228_8988646
ENSMUSG00000040269.6_1	chr3	-	476	2	NIC	ENSMUSG00000040269.6	novel	783	3	NA	NA	109	-16	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTAATCCTGTTCTTCC	NA	False	NA	-17	True	NA	NA	NA	8988869	8867221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_8867475_8988646
ENSMUSG00000040270.17_0	chr4	+	3618	7	FSM	ENSMUSG00000040270.17	ENSMUST00000108180.9	8882	7	-73	5337	-73	-432	multi-exon	FALSE	canonical	0	0	junction_4	3.23608130649127	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCATATGCAAAAAGTCCT	-27	True	NA	NA	False	NA	NA	NA	32238730	32580767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_32239090_32317197_32317305_32417434_32417584_32501612_32501868_32561777_32563368_32575239_32575447_32579816
ENSMUSG00000040272.15_12	chr2	-	1951	15	FSM	ENSMUSG00000040272.15	ENSMUST00000111246.8	3950	15	44	1955	42	16	multi-exon	FALSE	canonical	3	8	junction_14	5.46230122694433	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATGGTGCCTTCCTGCC	NA	False	NA	NA	False	AAAAAG	-16	NA	93680242	93665766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678553_93680109
ENSMUSG00000040272.15_13	chr2	-	1944	15	NIC	ENSMUSG00000040272.15	novel	3950	15	NA	NA	0	-19	combination_of_known_junctions	FALSE	canonical	3	10	junction_14	5.05682000583653	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGATACAAGAGTGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	93680288	93665801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678535_93680109
ENSMUSG00000040272.15_14	chr2	-	1870	14	NIC	ENSMUSG00000040272.15	novel	3950	15	NA	NA	14	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	8.72526088519953	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGCAACTCTTCATTCT	NA	False	NA	NA	False	NA	NA	NA	93680270	93665787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678532_93680109
ENSMUSG00000040274.12_0	chr5	+	1620	8	NIC	ENSMUSG00000040274.12	novel	2470	7	NA	NA	-25	-1158	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.8861735494711	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTGCTGCCATTTCGTT	NA	False	NA	17	True	NA	NA	NA	3391459	3571067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_3391575_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
ENSMUSG00000040274.12_10	chr5	+	3190	1	ISM	ENSMUSG00000040274.12	ENSMUST00000165117.8	11525	8	183914	12	56858	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAATAAAAACAGCGATT	6122	False	NA	NA	False	AATAAA	-10	NA	3577806	3580996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_3577800_3581000
ENSMUSG00000040274.12_2	chr5	+	3744	8	FSM	ENSMUSG00000040274.12	ENSMUST00000165117.8	11525	8	-9	7790	-9	993	multi-exon	FALSE	canonical	3	9	junction_1	33.2627143099493	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	GATAAA	-32	NA	3393883	3573218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_3393972_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
ENSMUSG00000040274.12_3	chr5	+	1806	7	FSM	ENSMUSG00000040274.12	ENSMUST00000042410.5	2470	7	-110	774	-110	-774	multi-exon	FALSE	canonical	3	75	junction_5	14.1852818873021	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATGGGGGGAACCACA	NA	False	NA	NA	False	AATAAA	-15	NA	3394201	3571451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
ENSMUSG00000040274.12_9	chr5	+	1306	1	ISM	ENSMUSG00000040274.12	ENSMUST00000165117.8	11525	8	178021	7789	50965	994	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	229	False	NA	NA	False	GATAAA	-33	NA	3571913	3573219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_3571900_3573200
ENSMUSG00000040276.16_0	chr17	+	4103	10	FSM	ENSMUSG00000040276.16	ENSMUST00000045896.11	4176	10	18	55	18	-55	multi-exon	TRUE	canonical	0	0	junction_1	19.6078845315467	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTATATCTATCAGTTGTG	NA	False	NA	NA	False	TTTAAA	-29	NA	27874539	27930030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27874734_27920799_27920916_27921673_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
ENSMUSG00000040276.16_2	chr17	+	4114	10	FSM	ENSMUSG00000040276.16	ENSMUST00000231669.2	4209	10	46	49	0	-49	multi-exon	FALSE	canonical	1	1	junction_1	19.4193488848393	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTATCAGTTGTGACCGTA	NA	False	NA	NA	False	TTTAAA	-35	NA	27904200	27930036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27904400_27920799_27920916_27921673_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
ENSMUSG00000040276.16_4	chr17	+	1380	8	ISM	ENSMUSG00000040276.16	ENSMUST00000097360.3	1800	10	17519	0	-1741	0	3prime_fragment	FALSE	canonical	3	26	junction_1	11.2866184086307	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	TTTAAA	-12	NA	27921689	27927633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
ENSMUSG00000040276.16_5	chr17	+	998	6	ISM	ENSMUSG00000040276.16	ENSMUST00000231350.2	1368	8	1166	40	-26	-4	3prime_fragment	FALSE	canonical	3	35	junction_1	8.46167832052247	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAGAACAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-5	NA	27924596	27927626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
ENSMUSG00000040280.11_0	chr10	+	924	4	FSM	ENSMUSG00000040280.11	ENSMUST00000035735.11	934	4	2	8	2	-8	multi-exon	FALSE	canonical	3	101	junction_1	3.29983164553722	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAATTTGCTGCGCCT	NA	False	NA	NA	False	AATACA	-13	NA	127350837	127353015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127350908_127351267_127351357_127352133_127352195_127352311
ENSMUSG00000040282.14_0	chr2	+	2573	11	FSM	ENSMUSG00000040282.14	ENSMUST00000110918.3	2735	11	-18	180	-1	-180	multi-exon	FALSE	canonical	3	283	junction_9	22.3015694514983	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCCTAAGTTACCAGTTT	NA	False	NA	7	True	ATTAAA	-16	NA	115412195	115609069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
ENSMUSG00000040282.14_10	chr2	+	2572	11	FSM	ENSMUSG00000040282.14	ENSMUST00000166472.8	2770	11	18	180	1	-180	multi-exon	FALSE	canonical	3	13	junction_9	96.2369991219593	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCCTAAGTTACCAGTTT	NA	False	NA	7	True	ATTAAA	-16	NA	115412214	115609069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517526_115517651_115607382
ENSMUSG00000040282.14_26	chr2	+	1057	1	ISM	ENSMUSG00000040282.14	ENSMUST00000166472.8	2770	11	195816	180	195731	-180	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCCTAAGTTACCAGTTT	8820	False	NA	7	True	ATTAAA	-16	NA	115608012	115609069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_115608000_115609100
ENSMUSG00000040289.9_0	chr3	-	988	1	ISM	ENSMUSG00000040289.9	ENSMUST00000042412.5	2423	5	2907	3	2276	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTACTGTGTCTGTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	8729409	8728421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_8728400_8729400
ENSMUSG00000040289.9_1	chr3	-	2181	5	FSM	ENSMUSG00000040289.9	ENSMUST00000042412.5	2423	5	218	24	-54	-24	multi-exon	FALSE	canonical	3	9	junction_1	1.11803398874989	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAGCAAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	8732098	8728442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_8730125_8731004_8731087_8731331_8731416_8731561_8731638_8731841
ENSMUSG00000040296.16_0	chr4	-	2456	9	FSM	ENSMUSG00000040296.16	ENSMUST00000137903.8	3533	9	3	1074	3	-2	multi-exon	FALSE	canonical	3	61	junction_4	6.68487097856047	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTACTTCCAATTCATTCC	-6	True	NA	-12	True	AATAAA	-20	NA	40220597	40204850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_40206107_40208450_40208595_40208770_40208923_40209878_40210050_40211549_40211641_40213730_40213880_40216354_40216491_40217329_40217488_40220398
ENSMUSG00000040296.16_3	chr4	-	3863	18	FSM	ENSMUSG00000040296.16	ENSMUST00000037907.13	3874	18	9	2	6	-2	multi-exon	FALSE	canonical	0	0	junction_16	34.3834473735139	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTACTTCCAATTCATTCC	-14	True	NA	-12	True	AATAAA	-20	NA	40239819	40204850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_40206107_40208450_40208595_40208770_40208923_40209878_40210050_40211549_40211641_40213730_40213880_40216354_40216491_40217329_40217488_40220398_40220504_40222034_40222198_40223797_40224057_40225039_40225194_40225597_40225706_40226596_40226720_40227965_40228114_40229494_40229677_40235247_40235383_40239590
ENSMUSG00000040297.13_0	chr1	-	3162	7	ISM	ENSMUSG00000040297.13	ENSMUST00000048377.11	6327	24	41946	731	-5466	-731	3prime_fragment	FALSE	canonical	3	115	junction_2	16.7696816374737	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCACTGGCTCTTCTGTCC	NA	False	NA	-4	True	AATAAA	-21	NA	161662305	161644413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604
ENSMUSG00000040297.13_1	chr1	-	5649	24	NIC	ENSMUSG00000040297.13	novel	6327	24	NA	NA	-66	-732	combination_of_known_junctions	FALSE	canonical	3	62	junction_17	27.0440374610156	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCACTGGCTCTTCTGTC	352	False	NA	-5	True	AATAAA	-20	NA	161704317	161644414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161673128_161673150_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680505_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
ENSMUSG00000040297.13_15	chr1	-	5572	23	NIC	ENSMUSG00000040297.13	novel	6327	24	NA	NA	0	-734	combination_of_known_junctions	FALSE	canonical	3	57	junction_12	27.3306959689789	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATCACTGGCTCTTCTG	418	False	NA	-7	True	AATAAA	-18	NA	161704251	161644416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680517_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
ENSMUSG00000040297.13_17	chr1	-	5691	23	NIC	ENSMUSG00000040297.13	novel	6327	24	NA	NA	-131	-734	combination_of_known_junctions	FALSE	canonical	3	57	junction_12	29.1913394266289	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATCACTGGCTCTTCTG	287	False	NA	-7	True	AATAAA	-18	NA	161704382	161644416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680505_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
ENSMUSG00000040297.13_5	chr1	-	1448	1	ISM	ENSMUSG00000040297.13	ENSMUST00000048377.11	6327	24	58390	731	4433	-731	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCACTGGCTCTTCTGTCC	1268	False	NA	-4	True	AATAAA	-21	NA	161645861	161644413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_161644400_161645900
ENSMUSG00000040297.13_8	chr1	-	5748	24	FSM	ENSMUSG00000040297.13	ENSMUST00000048377.11	6327	24	-155	734	-155	-734	multi-exon	FALSE	canonical	3	81	junction_17	25.1317135224534	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATCACTGGCTCTTCTG	263	False	NA	-7	True	AATAAA	-18	NA	161704406	161644416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161673128_161673150_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680517_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
ENSMUSG00000040302.18_1	chr5	-	1879	5	FSM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	485	4	-18	-4	multi-exon	FALSE	canonical	3	107	junction_2	28.3813318926368	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTGTGTGCTATCTGCG	1959	False	NA	-13	True	AATAAA	-17	NA	3646100	3633981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_3634808_3640222_3640804_3641669_3641816_3645254_3645446_3645965
ENSMUSG00000040302.18_12	chr5	-	2741	4	NIC	ENSMUSG00000040302.18	novel	2368	5	NA	NA	-13	-3	intron_retention	FALSE	canonical	3	146	junction_1	14.613540144522	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGTGCTATCTGCGT	1964	False	NA	-12	True	AATAAA	-18	NA	3646095	3633980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_3634808_3640222_3641816_3645254_3645446_3645965
ENSMUSG00000040302.18_7	chr5	-	1197	2	ISM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	5990	6	1547	-6	3prime_fragment	FALSE	canonical	3	146	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACACTGTGTGCTATCTG	7464	False	NA	-15	True	AATAAA	-15	NA	3640595	3633983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_3634808_3640222
ENSMUSG00000040302.18_9	chr5	-	3083	4	ISM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	500	4200	-3	2601	5prime_fragment	FALSE	canonical	3	107	junction_1	32.6019767635168	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTT	1974	False	NA	NA	False	NA	NA	NA	3646085	3638177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_3640804_3641669_3641816_3645254_3645446_3645965
ENSMUSG00000040312.15_13	chr17	+	2697	18	FSM	ENSMUSG00000040312.15	ENSMUST00000164242.9	2656	18	-32	-9	-32	0	multi-exon	FALSE	canonical	3	44	junction_1	24.5503507751598	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTGAGAGACTGCGA	4400	False	NA	20	True	AATAAA	-22	NA	35827964	35841902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35828127_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ENSMUSG00000040312.15_2	chr17	+	2614	18	NNC	ENSMUSG00000040312.15	novel	2656	18	NA	NA	-68	-1	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_1	28.0148255362583	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGTTTGAGAGACTGCG	4364	False	NA	19	True	AATAAA	-21	NA	35827928	35841901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_35828009_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ENSMUSG00000040312.15_38	chr17	+	2534	17	ISM	ENSMUSG00000040312.15	ENSMUST00000045956.14	2748	19	1040	12	753	-2	3prime_fragment	FALSE	canonical	3	93	junction_3	17.0604394360169	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGATGTTTGAGAGACTGC	5548	False	NA	18	True	AATAAA	-20	NA	35829112	35841900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ENSMUSG00000040312.15_41	chr17	+	2096	15	ISM	ENSMUSG00000040312.15	ENSMUST00000045956.14	2748	19	3857	10	1147	0	3prime_fragment	FALSE	canonical	3	93	junction_1	17.7489580033331	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTGAGAGACTGCGA	1950	False	NA	20	True	AATAAA	-22	NA	35831929	35841902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ENSMUSG00000040321.4_0	chr2	-	4254	2	FSM	ENSMUSG00000040321.4	ENSMUST00000050668.4	4300	2	39	7	10	-7	multi-exon	FALSE	canonical	3	9	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGAACTAGAGATTTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	114031911	114023948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_114028109_114031817
ENSMUSG00000040321.4_1	chr2	-	2438	1	ISM	ENSMUSG00000040321.4	ENSMUST00000050668.4	4300	2	5564	7	5535	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGAACTAGAGATTTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	114026386	114023948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_114023900_114026400
ENSMUSG00000040321.4_2	chr2	-	4344	3	NNC	ENSMUSG00000040321.4	novel	4300	2	NA	NA	18	-7	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	2	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGAACTAGAGATTTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	114031903	114023948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_114028109_114031435_114031534_114031817
ENSMUSG00000040322.11_0	chr3	+	3402	10	FSM	ENSMUSG00000040322.11	ENSMUST00000029477.11	3431	10	24	5	11	-5	multi-exon	FALSE	canonical	1	3	junction_3	3.55902608401044	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGGCTTGTTTTCTAA	4499	False	NA	NA	False	ATTAAA	-17	NA	109030488	109075768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_109030704_109043527_109043655_109056798_109056887_109062309_109062422_109064162_109064322_109065813_109065961_109066663_109066772_109068532_109068701_109070734_109070886_109073641
ENSMUSG00000040323.14_2	chr1	-	1681	3	FSM	ENSMUSG00000040323.14	ENSMUST00000151268.2	798	3	-181	-702	-181	702	multi-exon	FALSE	non_canonical	3	106	junction_1	98.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	161555239	161553108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_161553876_161554208_161554584_161554700
ENSMUSG00000040325.17_10	chr9	+	5665	24	NIC	ENSMUSG00000040325.17	novel	4967	23	NA	NA	74	-8	combination_of_known_junctions	FALSE	canonical	3	304	junction_23	40.0622389135641	246	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGGCCTTTCCTTGTTTT	NA	False	NA	8	True	AATAAA	-19	NA	106699146	106758183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757132
ENSMUSG00000040325.17_2	chr9	+	5612	25	NNC	ENSMUSG00000040325.17	novel	4967	23	NA	NA	75	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_24	84.0237131707472	167	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGGCCTTTCCTTGTTTT	NA	False	NA	8	True	AATAAA	-19	NA	106699147	106758183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757132_106757415_106757466
ENSMUSG00000040325.17_4	chr9	+	5662	24	NIC	ENSMUSG00000040325.17	novel	4967	23	NA	NA	74	-8	combination_of_known_junctions	FALSE	canonical	3	78	junction_23	71.1541365847348	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGGCCTTTCCTTGTTTT	NA	False	NA	8	True	AATAAA	-19	NA	106699146	106758183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757135
ENSMUSG00000040325.17_8	chr9	+	5617	25	NNC	ENSMUSG00000040325.17	novel	4967	23	NA	NA	73	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_24	84.0237131707472	54	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGCCTTTCCTTGTTTTC	NA	False	NA	9	True	AATAAA	-20	NA	106699145	106758184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757132_106757417_106757466
ENSMUSG00000040331.17_3	chr7	-	1367	11	FSM	ENSMUSG00000040331.17	ENSMUST00000160289.9	1435	11	63	5	63	2	multi-exon	FALSE	canonical	3	1333	junction_1	62.2636330453018	1020	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACAACGTGATCGTTTT	NA	False	NA	-12	True	ATTAAA	-17	NA	130149048	130134260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_130134423_130135306_130135397_130135499_130135592_130137253_130137303_130138712_130138808_130139891_130139983_130140740_130140841_130141543_130141696_130144409_130144541_130147624_130147703_130148721
ENSMUSG00000040339.11_0	chr3	-	5001	12	NNC	ENSMUSG00000040339.11	novel	5702	11	NA	NA	-3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.09892009982897	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTTAGATGCTCTTAA	NA	False	NA	NA	False	AATAAA	-13	NA	108934926	108878321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_108880838_108881532_108882659_108886160_108886231_108886996_108887125_108887390_108887611_108888459_108888556_108892627_108892732_108895626_108895674_108899941_108900059_108904350_108904381_108910615_108910737_108934500
ENSMUSG00000040339.11_1	chr3	-	5753	11	FSM	ENSMUSG00000040339.11	ENSMUST00000171143.2	5702	11	-52	1	-52	-1	multi-exon	FALSE	canonical	1	2	junction_4	2.6153393661244	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCTCTTAAGATTTTAC	NA	False	NA	NA	False	AATAAA	-21	NA	108934975	108878313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108882659_108886160_108886231_108886996_108887125_108887390_108887611_108888459_108888556_108892627_108892732_108895626_108895674_108899941_108900059_108904350_108904381_108910615_108910737_108934500
ENSMUSG00000040345.11_1	chr10	+	2042	16	FSM	ENSMUSG00000040345.11	ENSMUST00000219511.2	2217	16	330	-155	330	0	multi-exon	FALSE	canonical	3	14	junction_1	20.2809160433042	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	7419	False	NA	10	True	ATTAAA	-16	NA	127158162	127165812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127158301_127158562_127158760_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ENSMUSG00000040345.11_14	chr10	+	1692	12	ISM	ENSMUSG00000040345.11	ENSMUST00000069548.7	1782	15	1914	0	1347	0	3prime_fragment	FALSE	canonical	3	51	junction_1	7.05117070169648	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	NA	False	NA	10	True	ATTAAA	-16	NA	127161538	127165812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ENSMUSG00000040345.11_18	chr10	+	1418	11	ISM	ENSMUSG00000040345.11	ENSMUST00000069548.7	1782	15	2334	-1	1767	1	3prime_fragment	FALSE	canonical	3	63	junction_5	5.18169856321265	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATACATAGACTAAATAC	NA	False	NA	11	True	ATTAAA	-17	NA	127161958	127165813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ENSMUSG00000040345.11_3	chr10	+	1927	15	ISM	ENSMUSG00000040345.11	ENSMUST00000219511.2	2217	16	708	-156	708	1	3prime_fragment	FALSE	canonical	3	18	junction_1	17.5692507361177	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATACATAGACTAAATAC	7797	False	NA	11	True	ATTAAA	-17	NA	127158540	127165813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127158760_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ENSMUSG00000040345.11_34	chr10	+	1812	15	FSM	ENSMUSG00000040345.11	ENSMUST00000069548.7	1782	15	-29	-1	20	1	multi-exon	FALSE	canonical	1	1	junction_1	20.6447107422859	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATACATAGACTAAATAC	8852	False	NA	11	True	ATTAAA	-17	NA	127159595	127165813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127159700_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ENSMUSG00000040345.11_8	chr10	+	1931	16	FSM	ENSMUSG00000040345.11	ENSMUST00000219026.2	1946	16	16	-1	16	1	multi-exon	FALSE	canonical	2	5	junction_1	22.9759294335035	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATACATAGACTAAATAC	8848	False	NA	11	True	ATTAAA	-17	NA	127159591	127165813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127159700_127160213_127160329_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ENSMUSG00000040350.17_0	chr11	+	2780	7	FSM	ENSMUSG00000040350.17	ENSMUST00000046903.6	2161	7	11	-630	5	-2	multi-exon	FALSE	canonical	1	1	junction_1	1.5723301886761	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTCTAGGGGTGTCTGG	NA	False	NA	NA	False	AATACA	-11	NA	48728302	48742012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_48728873_48729663_48729760_48736262_48736494_48738341_48738365_48738851_48738968_48739399_48739436_48740304
ENSMUSG00000040350.17_5	chr11	+	3474	6	NIC	ENSMUSG00000040350.17	novel	2161	7	NA	NA	-199	-5	intron_retention	TRUE	canonical	1	1	junction_1	1.67332005306815	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACATTTCTAGGGGTGTC	NA	False	NA	NA	False	AATACA	-8	NA	48728092	48742009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_48728873_48729663_48729760_48736262_48736494_48738341_48738968_48739399_48739436_48740304
ENSMUSG00000040351.12_0	chr5	-	6203	20	NIC	ENSMUSG00000040351.12	novel	6426	20	NA	NA	-177	-418	combination_of_known_junctions	TRUE	canonical	3	68	junction_14	13.2648286332828	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCATTTTTGTCTCATT	NA	False	NA	-4	True	ATTAAA	-18	NA	3853102	3740417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_3743497_3743771_3743906_3744778_3744894_3750355_3750408_3751804_3751984_3752891_3753038_3754525_3754593_3754787_3754875_3756188_3756324_3763107_3763239_3772545_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783975_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
ENSMUSG00000040351.12_1	chr5	-	1720	1	ISM	ENSMUSG00000040351.12	ENSMUST00000043551.11	6426	20	110791	415	3095	-415	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTTTTGTCTCATTAAA	NA	False	NA	-1	True	ATTAAA	-21	NA	3742134	3740414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_3740400_3742100
ENSMUSG00000040351.12_33	chr5	-	2474	10	ISM	ENSMUSG00000040351.12	ENSMUST00000043551.11	6426	20	-176	32149	-176	11531	5prime_fragment	FALSE	canonical	3	68	junction_4	17.1269767715535	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTTGGAATTTTTTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	3853101	3772148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783975_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
ENSMUSG00000040351.12_36	chr5	-	1873	6	FSM	ENSMUSG00000040351.12	ENSMUST00000199763.2	1569	6	-304	0	-166	0	multi-exon	FALSE	canonical	3	68	junction_5	15.4324333790883	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTTAGTTTATAGTATA	NA	False	NA	NA	False	AATAAA	-16	NA	3853091	3783679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
ENSMUSG00000040351.12_6	chr5	-	4877	15	NNC	ENSMUSG00000040351.12	novel	6426	20	NA	NA	-30983	-418	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_14	19.9700030147259	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCATTTTTGTCTCATT	NA	False	NA	-4	True	ATTAAA	-18	NA	3783115	3740417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_3743497_3743771_3743906_3744778_3744894_3750355_3750408_3751804_3751984_3752891_3753038_3754525_3754593_3754787_3754875_3756188_3756324_3763107_3763239_3772545_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3782853
ENSMUSG00000040351.12_9	chr5	-	6189	20	FSM	ENSMUSG00000040351.12	ENSMUST00000043551.11	6426	20	-181	418	-181	-418	multi-exon	FALSE	canonical	3	27	junction_3	19.1839036868105	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCATTTTTGTCTCATT	NA	False	NA	-4	True	ATTAAA	-18	NA	3853106	3740417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_3743497_3743771_3743906_3744778_3744876_3750355_3750408_3751804_3751984_3752891_3753038_3754525_3754593_3754787_3754875_3756188_3756324_3763107_3763239_3772545_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783975_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
ENSMUSG00000040354.15_2	chr10	-	2800	21	FSM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	132	7	24	-2	multi-exon	FALSE	canonical	3	1393	junction_15	206.401332360041	3097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCGAGCCCTCTCCTGGT	NA	False	NA	-13	True	AATAAA	-20	NA	127147523	127132096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
ENSMUSG00000040354.15_4	chr10	-	197	1	ISM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	15362	7	1251	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCGAGCCCTCTCCTGGT	4356	False	NA	-13	True	AATAAA	-20	NA	127132293	127132096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127132100_127132300
ENSMUSG00000040356.17_2	chr17	-	3923	28	FSM	ENSMUSG00000040356.17	ENSMUST00000046022.16	3951	28	20	8	2	-3	multi-exon	FALSE	canonical	3	88	junction_20	16.8071446039882	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGAGTGCTTGGAGTA	5325	False	NA	-31	True	AATAAA	-5	NA	35069166	35058227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35058582_35058666_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064077_35064143_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497_35065644_35065842_35065972_35066118_35066301_35066383_35066438_35066722_35066798_35066879_35066995_35067083_35067202_35067300_35067411_35068871_35068976_35069109
ENSMUSG00000040356.17_21	chr17	-	4056	27	NIC	ENSMUSG00000040356.17	novel	3951	28	NA	NA	13	-6	intron_retention	FALSE	canonical	3	90	junction_19	16.3224262177268	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAACCAGAGTGCTTGGA	5336	False	NA	-34	True	AATAAA	-2	NA	35069155	35058230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35058582_35058666_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064077_35064143_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497_35065644_35065842_35066301_35066383_35066438_35066722_35066798_35066879_35066995_35067083_35067202_35067300_35067411_35068871_35068976_35069109
ENSMUSG00000040359.15_0	chr4	-	3846	20	NIC	ENSMUSG00000040359.15	novel	4316	19	NA	NA	16	2	combination_of_known_junctions	TRUE	canonical	3	78	junction_1	36.6180404503927	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTTATGTTATACAGTC	10	True	NA	-13	True	AATAAA	-16	NA	25281805	25248602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_25249970_25250425_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
ENSMUSG00000040359.15_4	chr4	-	2761	19	FSM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	10	1545	10	-3	multi-exon	FALSE	canonical	3	153	junction_3	22.816024799564	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAAGGACTTGTTTGTTA	4	True	NA	0	True	AATAAA	-21	NA	25281811	25250149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
ENSMUSG00000040359.15_43	chr4	-	2094	15	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	5	5739	5	-4197	5prime_fragment	FALSE	canonical	3	188	junction_2	18.7215089658709	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGATGACTTTTTCCA	-1	True	NA	NA	False	AGTAAA	-19	NA	25281816	25254343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
ENSMUSG00000040363.16_0	chrX	-	6928	15	FSM	ENSMUSG00000040363.16	ENSMUST00000115513.9	6941	15	2	11	2	-8	multi-exon	FALSE	canonical	3	55	junction_8	42.398077064597	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAAGGAGCAAATTGAAG	NA	False	NA	-17	True	AATAAA	-8	NA	11946790	11902989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_11946056
ENSMUSG00000040363.16_10	chrX	-	2273	7	ISM	ENSMUSG00000040363.16	ENSMUST00000115513.9	6941	15	32831	11	32831	-8	3prime_fragment	FALSE	canonical	3	150	junction_3	14.7129950119689	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAAGGAGCAAATTGAAG	NA	False	NA	-17	True	AATAAA	-8	NA	11913961	11902989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661
ENSMUSG00000040363.16_16	chrX	-	4745	12	ISM	ENSMUSG00000040363.16	ENSMUST00000115513.9	6941	15	22608	11	22608	-8	3prime_fragment	FALSE	canonical	3	55	junction_8	42.9531745812992	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAAGGAGCAAATTGAAG	NA	False	NA	-17	True	AATAAA	-8	NA	11924184	11902989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11921877_11921932_11922582
ENSMUSG00000040363.16_2	chrX	-	6422	15	NIC	ENSMUSG00000040363.16	novel	6941	15	NA	NA	-161	-8	combination_of_known_junctions	FALSE	canonical	2	9	junction_14	49.9731050114939	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAAGGAGCAAATTGAAG	NA	False	NA	-17	True	AATAAA	-8	NA	12026755	11902989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_12026527
ENSMUSG00000040363.16_20	chrX	-	6227	14	FSM	ENSMUSG00000040363.16	ENSMUST00000124033.8	6785	14	1	557	1	-554	multi-exon	FALSE	canonical	3	23	junction_10	49.0641410892762	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGAGCTCTGTGCTTGG	NA	False	NA	-14	True	NA	NA	NA	11946791	11903535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11922582_11925430_11926368_11926448_11927760_11927886_11946056
ENSMUSG00000040363.16_3	chrX	-	6826	15	FSM	ENSMUSG00000040363.16	ENSMUST00000065143.14	6839	15	2	11	2	-8	multi-exon	FALSE	canonical	3	70	junction_8	40.8733733995767	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAAGGAGCAAATTGAAG	NA	False	NA	-17	True	AATAAA	-8	NA	11946790	11902989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_11946056
ENSMUSG00000040363.16_4	chrX	-	6765	14	FSM	ENSMUSG00000040363.16	ENSMUST00000115512.9	6887	14	2	120	2	-117	multi-exon	FALSE	canonical	3	23	junction_10	50.3691696818388	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGTGTGTTTATGTTT	NA	False	NA	NA	False	CATAAA	-13	NA	11946790	11903098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11922582_11925430_11926368_11926448_11927760_11927886_11946056
ENSMUSG00000040363.16_6	chrX	-	4258	12	ISM	ENSMUSG00000040363.16	ENSMUST00000065143.14	6839	15	22999	5	22999	-2	3prime_fragment	FALSE	canonical	3	70	junction_8	40.7128627104831	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCAAATTGAAGTACTTT	NA	False	NA	-11	True	AATAAA	-14	NA	11923793	11902983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11921877_11921932_11922582
ENSMUSG00000040364.9_0	chr7	-	2329	3	NIC	ENSMUSG00000040364.9	novel	2470	4	NA	NA	44	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	6.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAAATATTTACCCAGCA	NA	False	NA	NA	False	AATAAA	-14	NA	45343782	45327116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_45328949_45333603_45333716_45343397
ENSMUSG00000040364.9_11	chr7	-	2432	4	FSM	ENSMUSG00000040364.9	ENSMUST00000040636.9	2470	4	31	7	31	-7	multi-exon	FALSE	canonical	0	0	junction_3	5.43650214343336	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAAATATTTACCCAGCA	NA	False	NA	NA	False	AATAAA	-14	NA	45343795	45327116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45328949_45333603_45333716_45334689_45334780_45343397
ENSMUSG00000040364.9_2	chr7	-	2972	3	ISM	ENSMUSG00000040364.9	ENSMUST00000040636.9	2470	4	8109	7	8109	-7	3prime_fragment	TRUE	canonical	3	9	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAAATATTTACCCAGCA	5046	False	NA	NA	False	AATAAA	-14	NA	45335717	45327116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45328949_45333603_45333716_45334689
ENSMUSG00000040364.9_4	chr7	-	1637	1	ISM	ENSMUSG00000040364.9	ENSMUST00000040636.9	2470	4	15073	7	15073	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAAATATTTACCCAGCA	7801	False	NA	NA	False	AATAAA	-14	NA	45328753	45327116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45327100_45328800
ENSMUSG00000040364.9_8	chr7	-	1858	2	ISM	ENSMUSG00000040364.9	ENSMUST00000040636.9	2470	4	10194	10	10194	-10	3prime_fragment	FALSE	canonical	3	13	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCAGCAAATATTTACCCA	7131	False	NA	NA	False	AATAAA	-11	NA	45333632	45327119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45328949_45333603
ENSMUSG00000040365.15_1	chr11	-	2436	6	FSM	ENSMUSG00000040365.15	ENSMUST00000047145.14	3432	6	996	0	-126	0	multi-exon	FALSE	canonical	3	31	junction_5	5.01996015920445	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTGGACTCTTTTA	NA	False	NA	-25	True	AATAAA	-18	NA	48707184	48697230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_48698674_48698951_48699080_48699291_48699315_48699876_48700108_48703126_48703223_48706669
ENSMUSG00000040365.15_2	chr11	-	1695	4	ISM	ENSMUSG00000040365.15	ENSMUST00000047145.14	3432	6	8203	0	3245	0	3prime_fragment	FALSE	canonical	3	37	junction_2	3.68178700572909	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTGGACTCTTTTA	NA	False	NA	-25	True	AATAAA	-18	NA	48699977	48697230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_48698674_48698951_48699080_48699291_48699315_48699876
ENSMUSG00000040365.15_3	chr11	-	2709	5	NIC	ENSMUSG00000040365.15	novel	3432	6	NA	NA	-189	-2	intron_retention	FALSE	canonical	3	31	junction_4	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTGTGGACTCTTT	NA	False	NA	-27	True	AATAAA	-16	NA	48707247	48697232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_48698674_48698951_48699315_48699876_48700108_48703126_48703223_48706669
ENSMUSG00000040365.15_4	chr11	-	1079	1	ISM	ENSMUSG00000040365.15	ENSMUST00000047145.14	3432	6	9871	0	4913	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTGGACTCTTTTA	NA	False	NA	-25	True	AATAAA	-18	NA	48698309	48697230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_48697200_48698300
ENSMUSG00000040365.15_5	chr11	-	2183	5	ISM	ENSMUSG00000040365.15	ENSMUST00000047145.14	3432	6	4696	0	-262	0	3prime_fragment	FALSE	canonical	3	37	junction_2	3.39116499156263	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTGGACTCTTTTA	NA	False	NA	-25	True	AATAAA	-18	NA	48703484	48697230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_48698674_48698951_48699080_48699291_48699315_48699876_48700108_48703126
ENSMUSG00000040365.15_7	chr11	-	4575	4	NIC	ENSMUSG00000040365.15	novel	3432	6	NA	NA	1392	-2	intron_retention	FALSE	canonical	3	39	junction_3	2.86744175568088	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTGTGGACTCTTT	NA	False	NA	-27	True	AATAAA	-16	NA	48705666	48697232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_48698674_48698951_48699315_48699876_48700108_48703126
ENSMUSG00000040370.14_0	chr6	+	1478	3	NNC	ENSMUSG00000040370.14	novel	1374	3	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	145	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTTAAAGGAGTCTTT	NA	False	NA	11	True	NA	NA	NA	145156922	145162262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_145157127_145160909_145160998_145161076
ENSMUSG00000040370.14_1	chr6	+	1338	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111726.10	1374	3	33	3	3	-3	multi-exon	FALSE	canonical	3	230	junction_1	45.5	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTTAAAGGAGTCTTT	NA	False	NA	11	True	NA	NA	NA	145156914	145162262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_145156979_145160909_145160998_145161076
ENSMUSG00000040370.14_2	chr6	+	1324	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111721.2	1336	3	-10	22	1	-22	multi-exon	FALSE	canonical	3	42	junction_1	139.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAACGAATAAATCTTA	NA	False	NA	-8	True	NA	NA	NA	145156901	145162243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_145156971_145160909_145160998_145161076
ENSMUSG00000040370.14_5	chr6	+	1617	4	FSM	ENSMUSG00000040370.14	ENSMUST00000111724.8	1618	4	-2	3	-2	-3	multi-exon	TRUE	canonical	3	14	junction_1	142.199390528464	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTTAAAGGAGTCTTT	NA	False	NA	11	True	NA	NA	NA	145156898	145162262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_145156979_145160247_145160511_145160909_145160998_145161076
ENSMUSG00000040370.14_6	chr6	+	1992	3	FSM	ENSMUSG00000040370.14	ENSMUST00000039729.5	2436	3	41	403	-3	-3	multi-exon	FALSE	canonical	3	14	junction_1	153.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTTAAAGGAGTCTTT	NA	False	NA	11	True	NA	NA	NA	145156922	145162262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_145156979_145160247_145160998_145161076
ENSMUSG00000040373.13_0	chr11	-	3472	6	FSM	ENSMUSG00000040373.13	ENSMUST00000039071.3	3705	6	16	217	16	-217	multi-exon	FALSE	canonical	2	4	junction_5	1.72046505340853	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGACTGCCGACCGTGT	NA	False	NA	NA	False	AAAACA	-19	NA	107805865	107765713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_107768436_107768720_107768867_107772422_107772564_107773714_107773802_107775171_107775408_107805725
ENSMUSG00000040374.14_0	chr3	-	1639	5	FSM	ENSMUSG00000040374.14	ENSMUST00000059021.10	1749	5	102	8	8	-4	multi-exon	FALSE	canonical	3	32	junction_2	14.3592304807744	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGGATGATTGTGCAT	NA	False	NA	-8	True	AATAAA	-12	NA	5641197	5625567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5641097
ENSMUSG00000040374.14_14	chr3	-	2083	4	NIC	ENSMUSG00000040374.14	novel	1749	5	NA	NA	2	-2	intron_retention	FALSE	canonical	3	35	junction_1	12.8322510366134	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGATTGTGCATTTATTT	NA	False	NA	-2	True	AATAAA	-18	NA	5641203	5625561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_5626825_5627728_5628333_5628679_5628790_5641097
ENSMUSG00000040374.14_5	chr3	-	1575	4	NIC	ENSMUSG00000040374.14	novel	2051	5	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	25.9786236911983	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTGTGCATTTATTTT	NA	False	NA	-1	True	AATAAA	-19	NA	5641190	5625560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_5626825_5628224_5628333_5628679_5628790_5641097
ENSMUSG00000040374.14_7	chr3	-	1559	4	FSM	ENSMUSG00000040374.14	ENSMUST00000195855.6	1587	4	20	8	3	-4	multi-exon	FALSE	canonical	3	15	junction_1	22.2161102706022	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGGATGATTGTGCAT	NA	False	NA	-8	True	AATAAA	-12	NA	5641185	5625567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_5626821_5628224_5628333_5628679_5628790_5641097
ENSMUSG00000040374.14_8	chr3	-	1779	6	FSM	ENSMUSG00000040374.14	ENSMUST00000071280.8	1777	6	-1	-1	-1	1	multi-exon	FALSE	canonical	1	3	junction_4	21.3672646822189	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATGATTGTGCATTTATT	NA	False	NA	-3	True	AATAAA	-17	NA	5641189	5625562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5635546_5635690_5641097
ENSMUSG00000040374.14_9	chr3	-	1641	5	NIC	ENSMUSG00000040374.14	novel	1749	5	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	3	8	junction_1	22.6936114358204	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGGATGATTGTGCAT	NA	False	NA	-8	True	AATAAA	-12	NA	5641203	5625567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_5626821_5627728_5627793_5628224_5628333_5628679_5628790_5641097
ENSMUSG00000040383.17_1	chr2	-	4847	35	FSM	ENSMUSG00000040383.17	ENSMUST00000043160.13	4888	35	33	8	-29	-8	multi-exon	FALSE	canonical	3	207	junction_21	28.9958832539162	506	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAAACATGTAAGGCATAC	7842	False	NA	-11	True	ATTAAA	-11	NA	114005787	113931658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_113932211_113934484_113934599_113936280_113936456_113938584_113938671_113940364_113940536_113942962_113943135_113943699_113943888_113945060_113945133_113947003_113947142_113949157_113949380_113950390_113950527_113951685_113951796_113956371_113956483_113957436_113957507_113957993_113958141_113961015_113961258_113963447_113963618_113965132_113965301_113967350_113967530_113971349_113971492_113973468_113973590_113976108_113976212_113977369_113977474_113979419_113979534_113980879_113980997_113981999_113982065_113985445_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
ENSMUSG00000040385.8_0	chr19	+	1375	7	FSM	ENSMUSG00000040385.8	ENSMUST00000046094.6	1473	7	97	1	3	0	multi-exon	TRUE	canonical	3	3675	junction_3	183.825475806689	2747	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATAGCCTCTGTCTCTCT	3374	False	NA	30	True	AATAAA	-19	NA	4242160	4245418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
ENSMUSG00000040387.17_0	chr4	-	2242	11	FSM	ENSMUSG00000040387.17	ENSMUST00000108218.10	7143	11	197	4704	4	15	multi-exon	TRUE	canonical	1	2	junction_4	2.76405499221705	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAATAATTTTCTAAAAC	168	False	NA	NA	False	NA	NA	NA	24850927	24617257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_24617547_24626896_24626992_24629159_24629353_24632642_24632702_24649539_24650267_24682054_24682271_24708952_24709052_24743857_24743966_24792616_24792798_24800805_24800891_24850737
ENSMUSG00000040389.16_0	chr3	+	4134	15	FSM	ENSMUSG00000040389.16	ENSMUST00000051145.15	4222	15	82	6	9	-6	multi-exon	FALSE	canonical	3	33	junction_5	8.19064922297845	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAATCTGTCCTTTTCTC	NA	False	NA	-3	True	AATAAA	-12	NA	108498676	108553029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108498914_108517192_108517360_108518671_108518756_108521648_108521734_108525805_108526609_108530638_108530766_108531872_108532052_108534518_108534777_108537007_108537084_108540376_108540535_108544306_108544477_108545208_108545380_108545941_108546074_108550377_108550597_108551761
ENSMUSG00000040389.16_1	chr3	+	4134	15	NIC	ENSMUSG00000040389.16	novel	4222	15	NA	NA	8	-4	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	13.7300876225335	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATCTGTCCTTTTCTCAC	NA	False	NA	-1	True	AATAAA	-14	NA	108498675	108553031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_108498914_108517192_108517360_108518671_108518756_108521648_108521734_108525805_108526609_108530641_108530766_108531872_108532052_108534518_108534777_108537007_108537084_108540376_108540535_108544306_108544477_108545208_108545380_108545941_108546074_108550377_108550597_108551761
ENSMUSG00000040389.16_7	chr3	+	5297	14	ISM	ENSMUSG00000040389.16	ENSMUST00000051145.15	4222	15	82	8	9	-8	intron_retention	FALSE	canonical	3	33	junction_5	8.49085829325946	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCAATCTGTCCTTTTC	NA	False	NA	-5	True	AATAAA	-10	NA	108498676	108553027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_108498914_108517192_108517360_108518671_108518756_108521648_108521734_108525805_108526609_108530638_108530766_108531872_108532052_108534518_108534777_108537007_108537084_108540376_108540535_108544306_108544477_108545208_108545380_108545941_108546074_108550377
ENSMUSG00000040390.14_0	chr7	-	3672	10	FSM	ENSMUSG00000040390.14	ENSMUST00000036453.14	3682	10	2	8	2	-8	multi-exon	FALSE	canonical	0	0	junction_3	25.4209012865835	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACCAAGCTTGGCTGTGT	NA	False	NA	-8	True	ATTAAA	-15	NA	27374017	27355807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27356412_27357276_27357958_27358254_27358368_27358445_27358600_27360959_27361077_27362649_27362897_27363822_27363999_27364374_27364524_27367773_27367955_27372767
ENSMUSG00000040390.14_3	chr7	-	1811	3	NIC	ENSMUSG00000040390.14	novel	3682	10	NA	NA	10	7	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	40.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAAGAAACAGAC	NA	False	NA	NA	False	ATTAAA	-9	NA	27373996	27363597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27363999_27367773_27367955_27372767
ENSMUSG00000040390.14_4	chr7	-	1977	4	ISM	ENSMUSG00000040390.14	ENSMUST00000108341.2	3403	11	10	7509	6	7	5prime_fragment	FALSE	canonical	3	11	junction_2	33.0891052899423	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAAGAAACAGAC	NA	False	NA	NA	False	ATTAAA	-9	NA	27374013	27363597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27363999_27364374_27364524_27367773_27367955_27372767
ENSMUSG00000040390.14_5	chr7	-	1579	2	FSM	ENSMUSG00000040390.14	ENSMUST00000138243.2	1621	2	3	39	3	-39	multi-exon	FALSE	canonical	3	84	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAGAAATGTTAGCACT	NA	False	NA	-39	True	AATAAA	-10	NA	27374003	27367611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27367955_27372767
ENSMUSG00000040396.13_0	chr8	+	2883	2	FSM	ENSMUSG00000040396.13	ENSMUST00000048216.6	5074	2	40	2151	40	-2151	multi-exon	FALSE	canonical	3	144	junction_1	0	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTTGCTATGTAGAATG	NA	False	NA	10	True	ATTAAA	-20	NA	10027756	10040004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_10028020_10037384
ENSMUSG00000040396.13_1	chr8	+	4845	3	FSM	ENSMUSG00000040396.13	ENSMUST00000139793.8	5191	3	60	286	50	-286	multi-exon	FALSE	canonical	3	35	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACTCAAAATTTAATGTC	NA	False	NA	-6	True	AATAAA	-6	NA	10027766	10041869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_10028020_10032863_10032971_10037384
ENSMUSG00000040396.13_5	chr8	+	3688	1	ISM	ENSMUSG00000040396.13	ENSMUST00000139793.8	5191	3	10646	115	10636	-115	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTATTGTCAGATAGTT	NA	False	NA	10	True	AATAAA	-17	NA	10038352	10042040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_10038400_10042000
ENSMUSG00000040407.19_0	chr5	+	12247	49	NIC	ENSMUSG00000040407.19	novel	13123	48	NA	NA	41	-1109	intron_retention	TRUE	canonical	3	19	junction_3	16.1909048328238	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGTAGTTGAACCTTCT	NA	False	NA	19	True	AATAAA	-21	NA	3978094	4130201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623_4007801_4010111_4012458_4018579_4018794_4020663_4020738_4021901_4022038_4022755_4022842_4025598_4025711_4026127_4026327_4031117_4031215_4042045_4042139_4051404_4051759_4053560_4053783_4054802_4054944_4055409_4055514_4058343_4058550_4063849_4064080_4078373_4078537_4079839_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_10	chr5	+	11844	48	NIC	ENSMUSG00000040407.19	novel	13123	48	NA	NA	-2611	-1118	combination_of_known_junctions	FALSE	canonical	3	19	junction_2	16.1541633678437	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCACCTTACTGTAGTT	3644	False	NA	10	True	AATAAA	-12	NA	3998678	4130192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623_4007801_4010111_4012458_4018579_4018794_4020663_4020738_4021901_4022038_4022755_4022842_4025598_4025711_4026127_4026327_4031117_4031215_4042045_4042139_4051404_4051759_4053560_4053783_4054802_4054944_4055409_4055514_4058343_4058550_4063849_4064080_4078373_4078537_4079839_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_14	chr5	+	6699	29	ISM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	80215	1119	-14926	-1119	3prime_fragment	FALSE	canonical	3	25	junction_2	14.6637481635522	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTCACCTTACTGTAGT	NA	False	NA	9	True	AATAAA	-11	NA	4058488	4130191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_4058550_4063849_4064080_4078373_4078537_4079839_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_16	chr5	+	5968	26	ISM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	101649	1313	-3836	-1313	3prime_fragment	FALSE	canonical	3	33	junction_1	13.6137577472203	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGCTGGACGAGTACC	NA	False	NA	NA	False	ATTAAA	-15	NA	4079922	4129997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_19	chr5	+	4259	19	ISM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	118436	1112	-12540	-1112	3prime_fragment	FALSE	canonical	3	47	junction_11	11.6327549468869	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTACTGTAGTTGAACCT	NA	False	NA	16	True	AATAAA	-18	NA	4096709	4130198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_2	chr5	+	11420	48	NIC	ENSMUSG00000040407.19	novel	13123	48	NA	NA	5	-1572	intron_retention	FALSE	canonical	3	7	junction_29	17.181401084668	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCAATGGCTCTTTTGT	NA	False	NA	NA	False	ATTAAA	-15	NA	3978278	4129738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623_4007801_4010111_4012458_4018579_4018794_4020663_4020738_4021901_4022038_4022755_4022842_4025598_4025711_4026127_4026327_4031117_4031215_4042045_4042139_4051404_4051759_4053560_4053783_4054802_4054944_4055409_4055514_4058343_4058550_4063849_4064080_4078373_4078537_4079839_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_20	chr5	+	3700	18	ISM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	122208	1112	-8768	-1112	3prime_fragment	FALSE	canonical	3	47	junction_10	11.9607200255424	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTACTGTAGTTGAACCT	NA	False	NA	16	True	AATAAA	-18	NA	4100481	4130198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_23	chr5	+	2755	12	ISM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	132112	1112	1136	-1112	3prime_fragment	FALSE	canonical	3	47	junction_4	12.4906576658565	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTACTGTAGTTGAACCT	NA	False	NA	16	True	AATAAA	-18	NA	4110385	4130198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_24	chr5	+	2036	10	ISM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	136255	1112	33	-1112	3prime_fragment	FALSE	canonical	3	47	junction_2	13.752665286014	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTACTGTAGTTGAACCT	NA	False	NA	16	True	AATAAA	-18	NA	4114528	4130198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_26	chr5	+	1056	7	ISM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	139464	1571	265	-1571	3prime_fragment	FALSE	canonical	3	55	junction_2	11.7390611019602	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCAATGGCTCTTTTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	4117737	4129739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_3	chr5	+	11453	48	NIC	ENSMUSG00000040407.19	novel	13123	48	NA	NA	11	-1572	intron_retention	FALSE	canonical	3	6	junction_18	16.8417661863368	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCAATGGCTCTTTTGT	NA	False	NA	NA	False	ATTAAA	-15	NA	3978284	4129738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623_4007801_4010111_4012458_4018579_4018794_4020663_4020738_4021901_4022038_4022755_4022842_4025598_4025711_4026127_4026327_4031117_4031215_4042045_4042139_4051404_4051759_4053560_4053783_4055409_4055514_4058343_4058550_4063849_4064080_4078373_4078537_4079839_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_36	chr5	+	10262	42	ISM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	32605	1112	6164	-1112	3prime_fragment	FALSE	canonical	3	19	junction_11	15.5327751195635	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTACTGTAGTTGAACCT	5553	False	NA	16	True	AATAAA	-18	NA	4010878	4130198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_4012458_4018579_4018794_4020663_4020738_4021901_4022038_4022755_4022842_4025598_4025711_4026127_4026327_4031117_4031215_4042045_4042139_4051404_4051759_4053560_4053783_4054802_4054944_4055409_4055514_4058343_4058550_4063849_4064080_4078373_4078537_4079839_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040407.19_6	chr5	+	10876	46	NIC	ENSMUSG00000040407.19	novel	13123	48	NA	NA	13	-1571	intron_retention	FALSE	canonical	0	0	junction_16	17.3313959031181	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCAATGGCTCTTTTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	3978286	4129739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623_4007801_4010111_4012458_4018579_4018794_4020663_4020738_4021901_4022038_4022755_4022842_4025598_4025711_4026127_4026327_4031117_4031215_4042045_4042139_4055409_4055514_4058343_4058550_4063849_4064080_4078373_4078537_4079839_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
ENSMUSG00000040410.15_0	chr4	+	2507	9	FSM	ENSMUSG00000040410.15	ENSMUST00000039234.10	2546	9	34	5	6	-2	multi-exon	FALSE	canonical	3	42	junction_4	14.7627063914446	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTTTCTTTGTTAAGAA	-5	True	NA	NA	False	AATAAA	-39	NA	22357576	22434086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
ENSMUSG00000040410.15_10	chr4	+	2616	10	FSM	ENSMUSG00000040410.15	ENSMUST00000184582.2	2570	10	-33	-13	12	0	multi-exon	FALSE	canonical	2	2	junction_8	25.9019995414816	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTCTTTGTTAAGAATC	1	True	NA	NA	False	AATAAA	-41	NA	22357582	22434088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433145_22433259_22433566
ENSMUSG00000040410.15_14	chr4	+	3598	9	NIC	ENSMUSG00000040410.15	novel	3641	9	NA	NA	17	-2	combination_of_known_junctions	FALSE	canonical	1	1	junction_7	28.3259487925824	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTTTCTTTGTTAAGAA	6	True	NA	NA	False	AATAAA	-39	NA	22357587	22434086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390713_22390922_22403531_22403746_22422716_22423928_22427149_22427463_22433566
ENSMUSG00000040410.15_17	chr4	+	2249	7	ISM	ENSMUSG00000040410.15	ENSMUST00000039234.10	2546	9	19001	0	18928	0	3prime_fragment	FALSE	canonical	3	42	junction_2	8.07602762639048	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTGTTAAGAATCTTT	5403	False	NA	NA	False	AATAAA	-44	NA	22376543	22434091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
ENSMUSG00000040410.15_18	chr4	+	1462	6	ISM	ENSMUSG00000040410.15	ENSMUST00000039234.10	2546	9	28615	2	28542	1	3prime_fragment	FALSE	canonical	3	42	junction_1	8.45221864364617	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCTTTGTTAAGAATCT	NA	False	NA	NA	False	AATAAA	-42	NA	22386157	22434089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
ENSMUSG00000040410.15_5	chr4	+	2465	9	FSM	ENSMUSG00000040410.15	ENSMUST00000184455.8	2478	9	11	2	11	-2	multi-exon	FALSE	canonical	2	4	junction_4	22.7156333832011	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTTTCTTTGTTAAGAA	0	True	NA	NA	False	AATAAA	-39	NA	22357581	22434086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390713_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
ENSMUSG00000040414.9_0	chr19	-	926	1	NIC	ENSMUSG00000040414.9	novel	1046	2	NA	NA	1245	1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGCTGTGTTGGGTTTGT	NA	False	NA	-6	True	ATTAAA	-16	NA	43653168	43652242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_43652200_43653200
ENSMUSG00000040414.9_1	chr19	-	2606	3	NIC	ENSMUSG00000040414.9	novel	1535	4	NA	NA	-9	1	intron_retention	FALSE	canonical	3	293	junction_1	1	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGCTGTGTTGGGTTTGT	NA	False	NA	-6	True	ATTAAA	-16	NA	43663308	43652242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_43653083_43654210_43655583_43662914
ENSMUSG00000040414.9_2	chr19	-	3734	2	FSM	ENSMUSG00000040414.9	ENSMUST00000235953.2	3724	2	-9	-1	-9	1	multi-exon	FALSE	canonical	3	295	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGCTGTGTTGGGTTTGT	NA	False	NA	-6	True	ATTAAA	-16	NA	43663308	43652242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_43655583_43662914
ENSMUSG00000040414.9_3	chr19	-	1519	4	FSM	ENSMUSG00000040414.9	ENSMUST00000046038.9	1535	4	12	4	-9	0	multi-exon	FALSE	canonical	3	130	junction_2	77.3146529162199	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACGCTGTGTTGGGTTTG	NA	False	NA	-7	True	ATTAAA	-15	NA	43663308	43652243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_43653083_43654210_43654268_43655353_43655583_43662914
ENSMUSG00000040414.9_7	chr19	-	1529	2	FSM	ENSMUSG00000040414.9	ENSMUST00000236286.2	1046	2	-487	4	-487	0	multi-exon	FALSE	canonical	3	293	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACGCTGTGTTGGGTTTG	NA	False	NA	-7	True	ATTAAA	-15	NA	43654900	43652243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_43653083_43654210
ENSMUSG00000040415.16_0	chr10	-	1817	2	ISM	ENSMUSG00000040415.16	ENSMUST00000116229.2	1994	5	2476	-262	1215	-2	3prime_fragment	FALSE	canonical	3	105	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCACACCCGTCTTCTG	1705	False	NA	-2	True	AATAAA	-23	NA	127029120	127026248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127027423_127028477
ENSMUSG00000040415.16_1	chr10	-	647	1	ISM	ENSMUSG00000040415.16	ENSMUST00000038217.14	1944	6	4684	1	3441	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCACACCCGTCTTCTGT	3931	False	NA	-1	True	AATAAA	-24	NA	127026894	127026247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127026200_127026900
ENSMUSG00000040415.16_10	chr10	-	1801	6	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	47.7811678383859	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCACACCCGTCTTCTGT	NA	False	NA	-1	True	AATAAA	-24	NA	127031597	127026247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278_127030343_127031562
ENSMUSG00000040415.16_12	chr10	-	2219	6	NIC	ENSMUSG00000040415.16	novel	1994	5	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	15	junction_5	54.0244389142544	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCACACCCGTCTTCTG	NA	False	NA	-2	True	AATAAA	-23	NA	127031589	127026248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127027423_127028477_127029227_127029598_127029673_127030278_127030343_127030550_127030682_127031562
ENSMUSG00000040415.16_14	chr10	-	1917	7	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	15	junction_6	51.2694407571953	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTATGCCACACCCGTC	NA	False	NA	-7	True	AATAAA	-18	NA	127031588	127026253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278_127030343_127030550_127030682_127031562
ENSMUSG00000040415.16_2	chr10	-	3295	4	ISM	ENSMUSG00000040415.16	ENSMUST00000116229.2	1994	5	20	-262	2	-2	intron_retention	FALSE	canonical	3	105	junction_1	20.8859335970941	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCACACCCGTCTTCTG	NA	False	NA	-2	True	AATAAA	-23	NA	127031576	127026248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127027423_127028477_127029227_127029598_127029673_127030278
ENSMUSG00000040415.16_3	chr10	-	991	4	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	54.0760780957922	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCACACCCGTCTTCTGT	NA	False	NA	-1	True	AATAAA	-24	NA	127031593	127026247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127026909_127029598_127029673_127030278_127030504_127031562
ENSMUSG00000040415.16_4	chr10	-	2250	5	FSM	ENSMUSG00000040415.16	ENSMUST00000116229.2	1994	5	1	-257	1	-7	multi-exon	FALSE	canonical	3	65	junction_4	30.8332207205151	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTATGCCACACCCGTC	NA	False	NA	-7	True	AATAAA	-18	NA	127031595	127026253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
ENSMUSG00000040415.16_5	chr10	-	2229	5	NIC	ENSMUSG00000040415.16	novel	1925	6	NA	NA	3	-7	intron_retention	FALSE	canonical	3	4	junction_2	54.3162038437886	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTATGCCACACCCGTC	NA	False	NA	-7	True	AATAAA	-18	NA	127031593	127026253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127027423_127028477_127029208_127029598_127029673_127030278_127030504_127031562
ENSMUSG00000040415.16_6	chr10	-	1947	6	FSM	ENSMUSG00000040415.16	ENSMUST00000038217.14	1944	6	-10	7	0	-7	multi-exon	FALSE	canonical	3	43	junction_1	37.9705148766777	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTATGCCACACCCGTC	NA	False	NA	-7	True	AATAAA	-18	NA	127031588	127026253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
ENSMUSG00000040423.12_0	chr1	+	4150	20	FSM	ENSMUSG00000040423.12	ENSMUST00000161609.8	11006	20	-3	6859	-3	302	multi-exon	FALSE	canonical	3	12	junction_16	4.23610650691766	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTGTTTGATTAATTG	NA	False	NA	NA	False	AAAAAG	-15	NA	160733984	160795689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_160734270_160757533_160757915_160765681_160765803_160767564_160767805_160768388_160768565_160770097_160770299_160774103_160774237_160775876_160775996_160777791_160777905_160778410_160778693_160779184_160779400_160782353_160782722_160783384_160783550_160786970_160787124_160789840_160790055_160791048_160791140_160791277_160791411_160792519_160792691_160793242_160793359_160795216
ENSMUSG00000040423.12_4	chr1	+	3700	1	ISM	ENSMUSG00000040423.12	ENSMUST00000239200.2	11121	21	64853	8	20294	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGAACAGTGTGTAGTC	6622	False	NA	8	True	ATTAAA	-14	NA	160798840	160802540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_160798800_160802500
ENSMUSG00000040424.16_0	chr7	+	1978	4	Fusion	ENSMUSG00000053198.15_ENSMUSG00000040424.16	novel	2926	3	NA	NA	11	2	multi-exon	FALSE	canonical	1	1	junction_1	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCCTGCTCCTGCCTGTT	NA	False	NA	NA	False	AATAAA	-11	NA	27207241	27230597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_+_27207529_27227720_27228078_27228373_27229223_27230112
ENSMUSG00000040424.16_1	chr7	+	2477	4	FSM	ENSMUSG00000040424.16	ENSMUST00000108353.9	2409	4	-65	-3	-65	3	multi-exon	FALSE	canonical	1	1	junction_1	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCCTGCCTGTTACCACT	NA	False	NA	NA	False	AATAAA	-17	NA	27222626	27230603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27223407_27227720_27228078_27228373_27229223_27230112
ENSMUSG00000040424.16_2	chr7	+	4200	3	FSM	ENSMUSG00000040424.16	ENSMUST00000037134.7	2926	3	-1266	-8	-1266	3	multi-exon	FALSE	canonical	1	2	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCCTGCCTGTTACCACT	NA	False	NA	NA	False	AATAAA	-17	NA	27225217	27230603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27228078_27228373_27229223_27230112
ENSMUSG00000040428.20_11	chr7	+	599	3	FSM	ENSMUSG00000040428.20	ENSMUST00000210797.2	646	3	45	2	-9	-2	multi-exon	FALSE	canonical	3	5	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGTTGTGACATTGTG	NA	False	NA	6	True	AATAAA	-15	NA	45199303	45203651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45199390_45202668_45202719_45203188
ENSMUSG00000040428.20_2	chr7	+	2667	20	FSM	ENSMUSG00000040428.20	ENSMUST00000051810.15	2660	20	-7	0	-7	0	multi-exon	TRUE	canonical	0	0	junction_7	4.51712653497375	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTTGTGACATTGTGTT	149	False	NA	8	True	AATAAA	-17	NA	45175746	45203653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45175866_45179992_45180083_45181681_45181790_45183761_45183835_45183930_45184032_45184167_45184278_45187080_45187297_45187621_45187902_45188629_45188714_45189903_45189952_45190254_45190336_45190478_45190629_45193369_45193469_45197373_45197515_45198483_45198584_45198653_45198731_45199227_45199390_45202668_45202719_45202992_45203106_45203188
ENSMUSG00000040428.20_5	chr7	+	574	2	FSM	ENSMUSG00000040428.20	ENSMUST00000211348.2	476	2	-40	-58	14	-8	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCTGTGGTTGTGAC	NA	False	NA	0	True	AATAAA	-9	NA	45199272	45203645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45199390_45203188
ENSMUSG00000040429.7_0	chr5	-	1348	2	FSM	ENSMUSG00000040429.7	ENSMUST00000044746.5	1376	2	20	8	-6	-5	multi-exon	FALSE	canonical	3	112	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGATTACATTTATTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	3943913	3940588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_3941898_3943874
ENSMUSG00000040429.7_1	chr5	-	3294	1	FSM	ENSMUSG00000040429.7	ENSMUST00000196417.2	1790	1	6	-1510	6	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATTTAAGATTACATT	NA	False	NA	NA	False	AATAAA	-7	NA	3943890	3940596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_3940600_3943900
ENSMUSG00000040429.7_2	chr5	-	2390	2	FSM	ENSMUSG00000040429.7	ENSMUST00000117463.2	2413	2	25	-2	14	-1	multi-exon	FALSE	canonical	3	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTATTTTGTATGTATT	NA	False	NA	NA	False	AATAAA	-22	NA	3943882	3940581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_3941898_3942808
ENSMUSG00000040430.19_0	chr11	-	2370	1	ISM	ENSMUSG00000040430.19	ENSMUST00000040380.13	5478	8	127375	1	127264	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGAGTGTAGCATCCTC	NA	False	NA	-2	True	AATAAA	-16	NA	107101088	107098718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_107098700_107101100
ENSMUSG00000040430.19_1	chr11	-	2797	9	NIC	ENSMUSG00000040430.19	novel	6329	10	NA	NA	-19	-3543	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	20.8862245271854	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTCGCTTCCCCTTTTTG	NA	False	NA	-3	True	AATAAA	-19	NA	107361544	107102260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_107103485_107107503_107107623_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107212412_107212502_107228237_107228387_107360716
ENSMUSG00000040430.19_3	chr11	-	2414	8	NIC	ENSMUSG00000040430.19	novel	6329	10	NA	NA	-19	-3807	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	26.7177232318526	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	107361544	107102524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_107103485_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107212412_107212502_107228237_107228387_107360716
ENSMUSG00000040433.17_1	chr9	-	1797	1	ISM	ENSMUSG00000040433.17	ENSMUST00000152594.8	7406	6	68265	0	34999	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAAGTGTCTTTTCTAA	NA	False	NA	-17	True	ATTAAA	-14	NA	96566619	96564822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_96564800_96566600
ENSMUSG00000040434.17_1	chr2	-	2428	15	FSM	ENSMUSG00000040434.17	ENSMUST00000176774.8	2377	15	-57	6	-7	0	multi-exon	FALSE	canonical	0	0	junction_10	41.8854731039636	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTATGTGTGAGTGTTTT	NA	False	NA	-6	True	GGGGCT	-42	NA	92201388	92195396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200907_92201009_92201083_92201239_92201325
ENSMUSG00000040434.17_19	chr2	-	2309	14	FSM	ENSMUSG00000040434.17	ENSMUST00000090582.11	2291	14	1	-19	1	0	multi-exon	FALSE	canonical	0	0	junction_9	42.5506311706155	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTATGTGTGAGTGTTTT	NA	False	NA	-6	True	GGGGCT	-42	NA	92201377	92195396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199834_92200007_92200204_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
ENSMUSG00000040434.17_6	chr2	-	2414	15	FSM	ENSMUSG00000040434.17	ENSMUST00000068586.13	2445	15	25	6	1	0	multi-exon	FALSE	canonical	0	0	junction_10	34.8762389144289	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTATGTGTGAGTGTTTT	NA	False	NA	-6	True	GGGGCT	-42	NA	92201377	92195396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
ENSMUSG00000040435.13_0	chr7	-	2280	3	FSM	ENSMUSG00000040435.13	ENSMUST00000042105.11	2333	3	46	7	46	-2	multi-exon	FALSE	canonical	3	356	junction_2	34	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAAACTCTTACGTGTGT	3907	False	NA	37	True	AATAAA	-17	NA	45175646	45172347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45172747_45173162_45174816_45175418
ENSMUSG00000040435.13_1	chr7	-	1758	2	FSM	ENSMUSG00000040435.13	ENSMUST00000167273.2	2809	2	1047	4	1047	-4	multi-exon	FALSE	canonical	3	424	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGATAAACTCTTACGTGT	5030	False	NA	35	True	AATAAA	-15	NA	45174523	45172349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45172747_45173162
ENSMUSG00000040435.13_4	chr7	-	3298	1	NIC	ENSMUSG00000040435.13	novel	2333	3	NA	NA	46	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATAAACTCTTACGTGTG	3907	False	NA	36	True	AATAAA	-16	NA	45175646	45172348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_45172300_45175600
ENSMUSG00000040441.13_2	chr10	-	1177	11	NIC	ENSMUSG00000040441.13	novel	3130	18	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	3.77359245282264	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCCCGTGGAGTGGGTC	NA	False	NA	NA	False	AATAAA	-18	NA	127012878	127008298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_127008446_127009143_127009251_127009350_127009406_127009492_127009576_127009777_127009895_127009967_127010038_127010152_127010260_127010674_127010771_127010853_127010932_127012440_127012555_127012675
ENSMUSG00000040446.5_0	chr18	-	4282	7	FSM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	15	2	15	-2	multi-exon	FALSE	canonical	3	196	junction_1	46.8807589054993	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTTTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	24663246	24618018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_24621389_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
ENSMUSG00000040446.5_15	chr18	-	2317	6	ISM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	15	20469	15	-2	5prime_fragment	FALSE	canonical	3	215	junction_1	43.046951111548	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATTGTCTCATGTTTTT	NA	False	NA	-3	True	AATAAA	-16	NA	24663246	24638485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
ENSMUSG00000040446.5_20	chr18	-	3075	5	FSM	ENSMUSG00000040446.5	ENSMUST00000234403.2	2950	5	-132	7	14	-7	multi-exon	FALSE	canonical	3	215	junction_1	46.5886252211846	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCTGTATTGTCTCATG	NA	False	NA	-8	True	AATAAA	-11	NA	24663247	24638490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_24640067_24640161_24641149_24641226_24641334_24642849_24642980_24662972
ENSMUSG00000040446.5_9	chr18	-	2795	1	ISM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	42448	2	42302	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTTTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	24620813	24618018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_24618000_24620800
ENSMUSG00000040447.16_0	chr11	-	2382	7	ISM	ENSMUSG00000040447.16	ENSMUST00000045303.10	3241	13	32792	0	-491	0	3prime_fragment	FALSE	canonical	1	2	junction_1	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCTCTCCAGTGGAA	NA	False	NA	-1	True	AATAAA	-19	NA	72347938	72342463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72343942_72344379_72344427_72344879_72345044_72345125_72345225_72347128_72347195_72347325_72347516_72347600
ENSMUSG00000040447.16_2	chr11	-	3299	13	FSM	ENSMUSG00000040447.16	ENSMUST00000045303.10	3241	13	-65	7	-65	-3	multi-exon	FALSE	canonical	0	0	junction_9	1.44096803881588	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTTTTGGTGGCTCTCC	NA	False	NA	-8	True	AATAAA	-12	NA	72380795	72342470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_72343942_72344379_72344427_72344879_72345044_72345125_72345225_72347128_72347195_72347325_72347516_72347600_72347754_72348030_72348174_72349458_72349526_72349727_72349880_72354468_72354606_72365530_72365597_72380251
ENSMUSG00000040451.19_0	chr19	-	3234	6	FSM	ENSMUSG00000040451.19	ENSMUST00000151289.9	3262	6	19	9	19	-7	multi-exon	FALSE	canonical	3	81	junction_5	43.4069118920017	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAAGTATGTGGCTATT	8038	False	NA	-11	True	AATAAA	-8	NA	32188394	32100136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32188227
ENSMUSG00000040451.19_1	chr19	-	3361	7	NNC	ENSMUSG00000040451.19	novel	3665	10	NA	NA	-3448	-7	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_6	60.6538447988987	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAAGTATGTGGCTATT	4128	False	NA	-11	True	AATAAA	-8	NA	32219674	32100136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32219462
ENSMUSG00000040451.19_11	chr19	-	2806	5	ISM	ENSMUSG00000040451.19	ENSMUST00000151289.9	3262	6	50911	9	121	-7	3prime_fragment	FALSE	canonical	3	176	junction_4	7.39509972887452	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAAGTATGTGGCTATT	NA	False	NA	-11	True	AATAAA	-8	NA	32137502	32100136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923
ENSMUSG00000040451.19_2	chr19	-	3601	10	FSM	ENSMUSG00000040451.19	ENSMUST00000099514.10	3665	10	52	12	3	-9	multi-exon	FALSE	canonical	3	26	junction_7	73.0506335477551	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTGAAAGTATGTGGCTA	8383	False	NA	-13	True	AATAAA	-6	NA	32365860	32100138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32225393_32225437_32266940_32267032_32329344_32329424_32365619
ENSMUSG00000040455.18_17	chr4	+	3987	5	ISM	ENSMUSG00000040455.18	ENSMUST00000137293.8	5541	13	43259	70	40272	-70	3prime_fragment	FALSE	canonical	3	19	junction_1	7.17635004720366	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGATTAGGCCTAGAGTT	NA	False	NA	8	True	AATAAA	-18	NA	21824995	21837800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234
ENSMUSG00000040455.18_20	chr4	+	2349	1	ISM	ENSMUSG00000040455.18	ENSMUST00000065111.15	6003	18	59180	70	50728	-70	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGATTAGGCCTAGAGTT	NA	False	NA	8	True	AATAAA	-18	NA	21835451	21837800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_21835500_21837800
ENSMUSG00000040455.18_3	chr4	+	4875	18	FSM	ENSMUSG00000040455.18	ENSMUST00000065111.15	6003	18	5	1123	-4	-1123	multi-exon	FALSE	canonical	0	0	junction_13	7.72986837222362	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAGTTCTGAGGAGATTC	-3	True	NA	1	True	AATAAA	-14	NA	21776276	21836747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234
ENSMUSG00000040455.18_4	chr4	+	2474	8	ISM	ENSMUSG00000040455.18	ENSMUST00000065111.15	6003	18	5	37560	-4	1649	5prime_fragment	FALSE	canonical	3	17	junction_5	4.80221037542046	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATATTGTTGAAGAAT	-3	True	NA	NA	False	AATAAA	-16	NA	21776276	21800310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604
ENSMUSG00000040455.18_8	chr4	+	5783	17	FSM	ENSMUSG00000040455.18	ENSMUST00000040429.12	5861	17	0	78	0	-76	multi-exon	FALSE	canonical	3	5	junction_12	7.05226027596827	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTAATTGATTAGGCCT	-8	True	NA	2	True	AATAAA	-12	NA	21776271	21837794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234
ENSMUSG00000040459.12_0	chr8	-	1700	4	FSM	ENSMUSG00000040459.12	ENSMUST00000048545.10	3197	4	-7	1504	-7	-3	multi-exon	FALSE	canonical	3	754	junction_2	83.8424448328861	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATGTTTAAGCAATTTT	5248	False	NA	-14	True	AATAAA	-32	NA	8740528	8716578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_8717417_8731383_8731468_8733747_8733974_8739976
ENSMUSG00000040459.12_2	chr8	-	3979	3	FSM	ENSMUSG00000040459.12	ENSMUST00000208252.2	3559	3	-423	3	-6	-3	multi-exon	FALSE	canonical	3	891	junction_2	32	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATGTTTAAGCAATTTT	5249	False	NA	-14	True	AATAAA	-32	NA	8740527	8716578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_8717417_8731383_8733974_8739976
ENSMUSG00000040459.12_9	chr8	-	2516	2	ISM	ENSMUSG00000040459.12	ENSMUST00000207070.2	525	3	-796	-772	-796	-1	intron_retention	FALSE	canonical	3	955	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTTTAAGCAATTTTTA	NA	False	NA	-12	True	AATAAA	-34	NA	8733059	8716576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_8717417_8731383
ENSMUSG00000040462.14_0	chr10	-	2463	14	FSM	ENSMUSG00000040462.14	ENSMUST00000080975.6	2458	14	-7	2	-1	0	multi-exon	FALSE	canonical	3	172	junction_9	22.2351605990131	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCATCAGGCTCTGTGGG	NA	False	NA	-4	True	AATAAA	-14	NA	126957001	126931520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_126932242_126932498_126932612_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
ENSMUSG00000040462.14_1	chr10	-	2628	15	FSM	ENSMUSG00000040462.14	ENSMUST00000164259.9	2627	15	-1	0	-1	0	multi-exon	FALSE	canonical	3	78	junction_3	48.7011398265807	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCATCAGGCTCTGTGGG	NA	False	NA	-4	True	AATAAA	-14	NA	126957001	126931520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_126932242_126932498_126932612_126932783_126932949_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
ENSMUSG00000040463.17_3	chr11	+	4127	26	FSM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	11	220	9	-220	multi-exon	FALSE	canonical	3	2354	junction_12	204.057066527969	5741	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGACGCCAATCTCTGA	NA	False	NA	44	True	AATAAA	-14	NA	72332191	72342374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
ENSMUSG00000040464.16_0	chr5	-	1601	1	ISM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	20482	2	4390	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTAGTTTCTGTTCCTAA	NA	False	NA	NA	False	GATAAA	-17	NA	5589056	5587455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_5587500_5589100
ENSMUSG00000040464.16_1	chr5	-	2933	10	FSM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	37	2	12	-2	multi-exon	FALSE	canonical	3	193	junction_5	43.7924397331066	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTAGTTTCTGTTCCTAA	NA	False	NA	NA	False	GATAAA	-17	NA	5609501	5587455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
ENSMUSG00000040464.16_6	chr5	-	2987	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	13	-2	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	83.4476253277438	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTAGTTTCTGTTCCTAA	NA	False	NA	NA	False	GATAAA	-17	NA	5609500	5587455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_5589452_5592246_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
ENSMUSG00000040464.16_8	chr5	-	3006	11	NIC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	14	-3	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	110.515564514687	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTAGTTTCTGTTCCTA	NA	False	NA	NA	False	GATAAA	-16	NA	5609499	5587456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5604823_5604900_5605237_5605383_5606064_5606157_5607212_5607407_5609432
ENSMUSG00000040466.17_0	chr7	+	820	5	FSM	ENSMUSG00000040466.17	ENSMUST00000037399.16	1028	5	47	161	-7	-1	multi-exon	FALSE	canonical	2	274	junction_1	67.0834368529222	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTCCTCTCTCTGTC	NA	False	NA	45	True	AATAAA	-42	NA	27147449	27165408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27147622_27158680_27158846_27158987_27159078_27161991_27162121_27165144
ENSMUSG00000040466.17_2	chr7	+	1540	1	FSM	ENSMUSG00000040466.17	ENSMUST00000207799.2	1504	1	-42	6	-13	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAGGAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	27147443	27148983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27147400_27149000
ENSMUSG00000040471.18_0	chr11	+	2042	4	FSM	ENSMUSG00000040471.18	ENSMUST00000076443.10	1818	4	-225	1	-225	-1	multi-exon	FALSE	canonical	2	5	junction_1	0.942809041582063	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAAGAGTCTGAGTGC	NA	False	NA	NA	False	AATAAA	-13	NA	72326126	72329225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72326591_72327264_72327468_72327544_72327659_72327964
ENSMUSG00000040471.18_1	chr11	+	1570	2	FSM	ENSMUSG00000040471.18	ENSMUST00000108499.2	874	2	-75	-621	-67	2	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAGTCTGAGTGCCAC	NA	False	NA	NA	False	AATAAA	-16	NA	72326284	72329228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72326591_72327964
ENSMUSG00000040472.16_0	chr14	-	1627	11	ISM	ENSMUSG00000040472.16	ENSMUST00000169237.8	2547	16	2257	-1	214	1	3prime_fragment	FALSE	canonical	3	454	junction_10	29.2567940827426	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAAAGCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	55957376	55953332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252
ENSMUSG00000040472.16_1	chr14	-	1879	17	FSM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	19	-12	13	-8	multi-exon	FALSE	canonical	3	119	junction_16	115.082697847027	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCATTACTGCTGCCCTGA	NA	False	NA	-7	True	AATAAA	-31	NA	55959701	55953769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959657
ENSMUSG00000040472.16_10	chr14	-	1849	15	ISM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	488	-13	401	-7	3prime_fragment	FALSE	canonical	3	306	junction_12	81.9057447338596	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTACTGCTGCCCTGAC	NA	False	NA	-6	True	AATAAA	-32	NA	55959232	55953768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051
ENSMUSG00000040472.16_2	chr14	-	1968	17	FSM	ENSMUSG00000040472.16	ENSMUST00000227061.2	2882	17	5	909	5	0	multi-exon	FALSE	canonical	3	103	junction_16	117.751443064406	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGCCAAGCTACCATTA	NA	False	NA	-19	True	AATAAA	-19	NA	55959654	55953781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ENSMUSG00000040472.16_5	chr14	-	1840	16	FSM	ENSMUSG00000040472.16	ENSMUST00000169237.8	2547	16	272	435	272	-7	multi-exon	FALSE	canonical	3	306	junction_12	87.1219834484959	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTACTGCTGCCCTGAC	NA	False	NA	-6	True	AATAAA	-32	NA	55959361	55953768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300
ENSMUSG00000040473.16_0	chr5	-	3053	23	FSM	ENSMUSG00000040473.16	ENSMUST00000054865.13	4956	23	27	1876	-4	17	multi-exon	FALSE	canonical	2	4	junction_19	2.58132197536376	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCTAAATGTATATTTATA	NA	False	NA	1	True	AATAAA	-18	NA	5714212	5631153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_5631367_5631903_5632009_5632441_5632529_5634650_5634849_5636355_5636433_5637140_5637279_5639119_5639313_5643771_5643854_5645920_5646040_5654273_5654393_5663685_5663851_5667168_5667386_5668947_5669070_5669166_5669216_5671919_5672044_5675749_5675928_5676008_5676159_5690128_5690228_5694423_5694501_5696935_5697046_5699789_5699856_5707787_5707848_5713907
ENSMUSG00000040479.13_0	chr2	-	3532	31	NNC	ENSMUSG00000040479.13	novel	3584	31	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_9	44.504232008503	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTTTCTTTTTTTC	NA	False	NA	-5	True	AGTAAA	-16	NA	91793947	91763170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767120_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91793630
ENSMUSG00000040479.13_2	chr2	-	3525	31	FSM	ENSMUSG00000040479.13	ENSMUST00000028667.10	3584	31	59	0	59	0	multi-exon	FALSE	canonical	3	212	junction_9	28.4788615565222	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTTTCTTTTTTTC	NA	False	NA	-5	True	AGTAAA	-16	NA	91793943	91763170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91793630
ENSMUSG00000040481.18_13	chr11	-	717	1	ISM	ENSMUSG00000040481.18	ENSMUST00000057892.15	11488	28	96268	1857	8052	459	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAGGTCTCTTTGAAT	1560	False	NA	-13	True	AATAAA	-22	NA	106926480	106925763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106925800_106926500
ENSMUSG00000040481.18_16	chr11	-	5066	19	NIC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	-6079	457	combination_of_known_junctions	FALSE	canonical	3	17	junction_8	15.3329307515588	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGGAGGTCTCTTTGA	9022	False	NA	-15	True	AATAAA	-20	NA	106964110	106925765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106935317_106935492_106937825_106938170_106943614_106943841_106944048_106944132_106945281_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508
ENSMUSG00000040481.18_21	chr11	-	5222	19	NNC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	-6634	457	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_9	13.2587031747657	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGGAGGTCTCTTTGA	8467	False	NA	-15	True	AATAAA	-20	NA	106964665	106925765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106935317_106935492_106937825_106938170_106943614_106943841_106944048_106944132_106945680_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508
ENSMUSG00000040481.18_50	chr11	-	726	1	NIC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	-51	9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAGAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	106934583	106933857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106933900_106934600
ENSMUSG00000040482.17_0	chr17	+	1396	7	FSM	ENSMUSG00000040482.17	ENSMUST00000180043.8	1447	7	44	7	-19	-7	multi-exon	FALSE	canonical	3	133	junction_1	19.7434940057619	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGGGTCTCTTGCTGTGT	3020	False	NA	23	True	AATAAA	-12	NA	35056038	35058155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35056193_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUSG00000040482.17_1	chr17	+	1420	7	FSM	ENSMUSG00000040482.17	ENSMUST00000046244.15	1519	7	45	54	-18	-7	multi-exon	FALSE	canonical	3	41	junction_1	48.3439643480847	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGGGTCTCTTGCTGTGT	3021	False	NA	23	True	AATAAA	-12	NA	35056039	35058155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35056218_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUSG00000040482.17_10	chr17	+	1505	6	NIC	ENSMUSG00000040482.17	novel	1447	7	NA	NA	24	-7	intron_retention	FALSE	canonical	3	133	junction_1	20.3115730557729	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGGGTCTCTTGCTGTGT	3000	False	NA	23	True	AATAAA	-12	NA	35056018	35058155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35056193_35056368_35056731_35056876_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUSG00000040482.17_13	chr17	+	1807	4	NIC	ENSMUSG00000040482.17	novel	701	5	NA	NA	-19	-7	intron_retention	FALSE	canonical	3	152	junction_1	15.4560308258262	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGGGTCTCTTGCTGTGT	3020	False	NA	23	True	AATAAA	-12	NA	35056038	35058155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUSG00000040482.17_4	chr17	+	1687	5	NIC	ENSMUSG00000040482.17	novel	1519	7	NA	NA	18	-7	intron_retention	FALSE	canonical	3	152	junction_1	16.3458710382775	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGGGTCTCTTGCTGTGT	2994	False	NA	23	True	AATAAA	-12	NA	35056012	35058155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35056731_35056876_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUSG00000040482.17_7	chr17	+	1562	6	NIC	ENSMUSG00000040482.17	novel	1519	7	NA	NA	-9	-7	intron_retention	FALSE	canonical	3	143	junction_2	17.7696370249929	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGGGTCTCTTGCTGTGT	3030	False	NA	23	True	AATAAA	-12	NA	35056048	35058155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUSG00000040483.16_4	chr11	+	176	1	ISM	ENSMUSG00000040483.16	ENSMUST00000146233.8	2597	6	10369	1559	10334	93	mono-exon	FALSE	NA	NA	NA	NA	NA	326	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACAGCAT	NA	False	NA	NA	False	NA	NA	NA	72202824	72203000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72202800_72203000
ENSMUSG00000040488.19_0	chr7	-	5076	30	FSM	ENSMUSG00000040488.19	ENSMUST00000121175.8	5118	30	40	2	-10	0	multi-exon	FALSE	canonical	3	195	junction_24	119.840530186521	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCGGCCTCTGCCTGCC	NA	False	NA	-8	True	ATTAAA	-14	NA	27033048	27004566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610_27027776_27028164_27028288_27028392_27028468_27028803_27028907_27028995_27029244_27029551_27029744_27032779
ENSMUSG00000040488.19_1	chr7	-	2402	13	ISM	ENSMUSG00000040488.19	ENSMUST00000121175.8	5118	30	11221	2	11171	0	3prime_fragment	FALSE	canonical	3	315	junction_8	104.920174683211	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCGGCCTCTGCCTGCC	NA	False	NA	-8	True	ATTAAA	-14	NA	27021867	27004566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713
ENSMUSG00000040488.19_22	chr7	-	1594	8	ISM	ENSMUSG00000040488.19	ENSMUST00000121175.8	5118	30	22993	2	8	0	3prime_fragment	FALSE	canonical	3	513	junction_4	58.3896132781808	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCGGCCTCTGCCTGCC	NA	False	NA	-8	True	ATTAAA	-14	NA	27010095	27004566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945
ENSMUSG00000040488.19_5	chr7	-	4048	24	ISM	ENSMUSG00000040488.19	ENSMUST00000121175.8	5118	30	5331	2	5281	0	3prime_fragment	FALSE	canonical	3	305	junction_13	106.170387720557	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCGGCCTCTGCCTGCC	NA	False	NA	-8	True	ATTAAA	-14	NA	27027757	27004566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610
ENSMUSG00000040489.6_1	chr11	+	1362	2	ISM	ENSMUSG00000040489.6	ENSMUST00000049038.4	2997	5	11456	4	11456	-4	3prime_fragment	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCTCTTGTTAAATGT	NA	False	NA	NA	False	AATAAA	-7	NA	45882592	45908817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_45882939_45907801
ENSMUSG00000040495.5_0	chr2	+	2770	2	Genic_Genomic	ENSMUSG00000040495.5	novel	1440	1	NA	NA	-5062	1141	multi-exon	FALSE	canonical	1	2	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGTGAGTTTATTTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	91752531	91760174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_91752689_91757561
ENSMUSG00000040495.5_2	chr2	+	1469	1	FSM	ENSMUSG00000040495.5	ENSMUST00000045537.4	1440	1	1111	-1140	1111	1140	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAAGTGAGTTTATTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	91758704	91760173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91758700_91760200
ENSMUSG00000040498.8_0	chr7	-	607	3	ISM	ENSMUSG00000040498.8	ENSMUST00000208210.2	832	4	2875	-94	2875	94	3prime_fragment	FALSE	canonical	3	9	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCGGCTGCCAACACCCCA	4	True	NA	NA	False	AATAAA	-17	NA	19675948	19672012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19672176_19673097_19673268_19675674
ENSMUSG00000040502.6_0	chr10	-	1980	4	FSM	ENSMUSG00000040502.6	ENSMUST00000040307.6	3037	4	17	1040	17	-1040	multi-exon	TRUE	canonical	3	10	junction_3	2.16024689946929	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGGGCCTCCTTTCTCA	9936	False	NA	-2	True	CATAAA	-16	NA	126896036	126891919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_126892781_126893300_126893494_126894088_126894245_126895266
ENSMUSG00000040502.6_1	chr10	-	1767	1	ISM	ENSMUSG00000040502.6	ENSMUST00000040307.6	3037	4	3390	17	3390	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATTGCTAAAGTCAGAC	8692	False	NA	-16	True	ATTAAA	-11	NA	126892663	126890896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_126890900_126892700
ENSMUSG00000040506.17_0	chr2	+	5255	18	FSM	ENSMUSG00000040506.17	ENSMUST00000045705.14	5203	18	-53	1	-10	0	multi-exon	FALSE	canonical	3	82	junction_5	14.4832560525026	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGCTCCTGCTTATTTC	NA	False	NA	6	True	ATTAAA	-18	NA	91560516	91749193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91604093_91635368_91635456_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
ENSMUSG00000040506.17_1	chr2	+	4973	19	FSM	ENSMUSG00000040506.17	ENSMUST00000099712.10	5021	19	47	1	-1	0	multi-exon	FALSE	canonical	3	41	junction_7	21.1640418320005	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGCTCCTGCTTATTTC	NA	False	NA	6	True	ATTAAA	-18	NA	91560525	91749193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91602783_91603055_91604093_91635368_91635456_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
ENSMUSG00000040506.17_2	chr2	+	5172	17	NIC	ENSMUSG00000040506.17	novel	4929	18	NA	NA	-14	0	intron_retention	TRUE	canonical	3	16	junction_7	27.2367370246511	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGCTCCTGCTTATTTC	NA	False	NA	6	True	ATTAAA	-18	NA	91560512	91749193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91604093_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
ENSMUSG00000040506.17_23	chr2	+	3738	12	ISM	ENSMUSG00000040506.17	ENSMUST00000045705.14	5203	18	42636	3	-371	-2	3prime_fragment	FALSE	canonical	3	100	junction_2	13.0858576112339	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAGGCTCCTGCTTATT	NA	False	NA	4	True	ATTAAA	-16	NA	91603205	91749191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_91604093_91635368_91635456_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
ENSMUSG00000040506.17_3	chr2	+	4889	18	FSM	ENSMUSG00000040506.17	ENSMUST00000111317.9	4929	18	40	0	-4	0	multi-exon	FALSE	canonical	3	16	junction_8	30.449799858434	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGCTCCTGCTTATTTC	NA	False	NA	6	True	ATTAAA	-18	NA	91560522	91749193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91602783_91603055_91604093_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
ENSMUSG00000040506.17_34	chr2	+	772	1	ISM	ENSMUSG00000040506.17	ENSMUST00000099712.10	5021	19	187943	1	106409	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGCTCCTGCTTATTTC	NA	False	NA	6	True	ATTAAA	-18	NA	91748421	91749193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_91748400_91749200
ENSMUSG00000040511.15_0	chr7	-	2851	8	FSM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	47	7	0	-7	multi-exon	FALSE	canonical	3	90	junction_4	10.2359909243845	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACTCCATTGTCCGA	9978	False	NA	-8	True	NA	NA	NA	19655038	19637509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798_19651096_19652486_19652835_19654877
ENSMUSG00000040511.15_10	chr7	-	2222	6	ISM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	4110	7	-2288	-7	3prime_fragment	FALSE	canonical	3	90	junction_4	11.805083650699	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACTCCATTGTCCGA	NA	False	NA	-8	True	NA	NA	NA	19650975	19637509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798
ENSMUSG00000040511.15_2	chr7	-	1884	4	FSM	ENSMUSG00000040511.15	ENSMUST00000159413.2	540	4	142	-1486	142	-7	multi-exon	FALSE	canonical	3	110	junction_3	5.79271573232759	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACTCCATTGTCCGA	NA	False	NA	-8	True	NA	NA	NA	19644647	19637509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529
ENSMUSG00000040511.15_3	chr7	-	1326	1	ISM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	16250	7	5954	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACTCCATTGTCCGA	4270	False	NA	-8	True	NA	NA	NA	19638835	19637509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19637500_19638800
ENSMUSG00000040520.8_0	chr4	-	4831	5	FSM	ENSMUSG00000040520.8	ENSMUST00000041374.8	4867	5	29	7	-8	-7	multi-exon	FALSE	canonical	3	44	junction_4	9.33742469849155	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATAACTGGAAATCTATT	-5	True	NA	-11	True	AATAAA	-18	NA	26346862	26324512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_26328309_26329085_26329163_26336620_26336731_26340416_26340999_26346596
ENSMUSG00000040520.8_1	chr4	-	2938	1	ISM	ENSMUSG00000040520.8	ENSMUST00000041374.8	4867	5	19443	5	13447	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAACTGGAAATCTATTCA	4597	False	NA	-9	True	AATAAA	-20	NA	26327448	26324510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_26324500_26327400
ENSMUSG00000040520.8_10	chr4	-	4491	5	NIC	ENSMUSG00000040520.8	novel	4867	5	NA	NA	3	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	25.7815340893439	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTCATAACTGGAAATCTA	3	True	NA	-13	True	AATAAA	-16	NA	26346888	26324514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_26328309_26329085_26329163_26336620_26336731_26340416_26340635_26346596
ENSMUSG00000040520.8_2	chr4	-	4196	4	ISM	ENSMUSG00000040520.8	ENSMUST00000041374.8	4867	5	6264	5	268	-5	3prime_fragment	TRUE	canonical	3	47	junction_3	8.60232526704263	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAACTGGAAATCTATTCA	6264	False	NA	-9	True	AATAAA	-20	NA	26340627	26324510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_26328309_26329085_26329163_26336620_26336731_26340416
ENSMUSG00000040520.8_5	chr4	-	4658	5	NIC	ENSMUSG00000040520.8	novel	4867	5	NA	NA	-11	-5	combination_of_known_junctions	FALSE	canonical	2	5	junction_4	23.7170824512628	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAACTGGAAATCTATTCA	-8	True	NA	-9	True	AATAAA	-20	NA	26346865	26324510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_26328309_26329085_26329163_26336620_26336731_26340416_26340999_26346774
ENSMUSG00000040521.12_2	chr10	-	1172	6	FSM	ENSMUSG00000040521.12	ENSMUST00000040560.11	1206	6	22	12	-15	-12	multi-exon	FALSE	canonical	3	855	junction_5	79.6728310027954	545	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTATAGTGCTTAATGT	NA	False	NA	-15	True	AATAAA	-12	NA	126866687	126858212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
ENSMUSG00000040524.10_0	chr9	-	1883	1	ISM	ENSMUSG00000040524.10	ENSMUST00000159109.2	7777	10	133288	3	6868	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGAGGGCTGCTGG	NA	False	NA	-3	True	AATAAA	-21	NA	65601558	65599675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_65599700_65601600
ENSMUSG00000040524.10_12	chr9	-	4067	5	ISM	ENSMUSG00000040524.10	ENSMUST00000159109.2	7777	10	126447	5	27	-5	3prime_fragment	FALSE	canonical	2	5	junction_1	2.48746859276655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATCTGTGAGGGCTGCT	NA	False	NA	-5	True	AATAAA	-19	NA	65608399	65599677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_65602977_65603424_65603504_65604313_65604531_65604775_65604952_65608103
ENSMUSG00000040524.10_2	chr9	-	7770	10	FSM	ENSMUSG00000040524.10	ENSMUST00000159109.2	7777	10	-9	16	-9	-16	multi-exon	FALSE	canonical	2	5	junction_1	3.80058475033046	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGACAATCACAAATCTG	NA	False	NA	-16	True	AATAAA	-8	NA	65734855	65599688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_65602977_65603424_65603504_65604313_65604531_65604775_65604952_65608103_65608471_65609553_65611901_65613372_65613461_65638257_65638484_65701903_65702778_65734747
ENSMUSG00000040524.10_5	chr9	-	6762	8	ISM	ENSMUSG00000040524.10	ENSMUST00000159109.2	7777	10	96402	3	-30018	-3	3prime_fragment	FALSE	canonical	2	5	junction_1	3.53986048381825	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGAGGGCTGCTGG	NA	False	NA	-3	True	AATAAA	-21	NA	65638444	65599675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_65602977_65603424_65603504_65604313_65604531_65604775_65604952_65608103_65608471_65609553_65611901_65613372_65613461_65638257
ENSMUSG00000040524.10_6	chr9	-	4219	6	ISM	ENSMUSG00000040524.10	ENSMUST00000159109.2	7777	10	125214	3	-1206	-3	3prime_fragment	FALSE	canonical	2	5	junction_1	2.48193472919817	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGAGGGCTGCTGG	NA	False	NA	-3	True	AATAAA	-21	NA	65609632	65599675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_65602977_65603424_65603504_65604313_65604531_65604775_65604952_65608103_65608471_65609553
ENSMUSG00000040525.14_0	chr7	-	1655	12	FSM	ENSMUSG00000040525.14	ENSMUST00000043822.8	1662	12	5	2	1	-2	multi-exon	FALSE	canonical	2	11	junction_1	3.71283233757493	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTCCCGTGTGTGACAG	NA	False	NA	-1	True	AATAAA	-18	NA	19530729	19513644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19513722_19514697_19514773_19514894_19515002_19518727_19518806_19519162_19519325_19520107_19520240_19522893_19522982_19524324_19524463_19526032_19526155_19526433_19526591_19526733_19526881_19530357
ENSMUSG00000040532.15_15	chr5	+	1174	5	FSM	ENSMUSG00000040532.15	ENSMUST00000148831.3	731	5	-251	-192	16	-2	multi-exon	FALSE	canonical	3	19	junction_2	251.938980707631	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTGGATCCGTTTTCA	NA	False	NA	8	True	AATAAA	-15	NA	135038575	135041022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135038972_135039740_135039915_135040094_135040235_135040337_135040520_135040740
ENSMUSG00000040532.15_16	chr5	+	1403	4	NIC	ENSMUSG00000040532.15	novel	1473	5	NA	NA	-18	-2	intron_retention	FALSE	canonical	3	552	junction_2	38.6637929966641	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTGGATCCGTTTTCA	NA	False	NA	8	True	AATAAA	-15	NA	135038526	135041022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_135038972_135039740_135040235_135040337_135040520_135040740
ENSMUSG00000040532.15_2	chr5	+	1111	6	FSM	ENSMUSG00000040532.15	ENSMUST00000046999.12	1493	6	375	7	-17	-2	multi-exon	FALSE	canonical	3	445	junction_1	65.8634952003004	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTGGATCCGTTTTCA	NA	False	NA	8	True	AATAAA	-15	NA	135038527	135041022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135038694_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ENSMUSG00000040532.15_3	chr5	+	1251	5	FSM	ENSMUSG00000040532.15	ENSMUST00000154469.8	1473	5	220	2	-15	-2	multi-exon	FALSE	canonical	3	552	junction_3	34.8926926447358	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTGGATCCGTTTTCA	NA	False	NA	8	True	AATAAA	-15	NA	135038529	135041022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ENSMUSG00000040532.15_5	chr5	+	1724	2	ISM	ENSMUSG00000040532.15	ENSMUST00000149778.2	1475	3	-30	2	-15	-2	intron_retention	FALSE	canonical	3	589	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTGGATCCGTTTTCA	NA	False	NA	8	True	AATAAA	-15	NA	135038529	135041022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_135038972_135039740
ENSMUSG00000040533.8_0	chr4	+	1957	8	FSM	ENSMUSG00000040533.8	ENSMUST00000102576.4	2001	8	2	42	2	-42	multi-exon	FALSE	canonical	0	0	junction_7	5.36808406515884	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAAAACAATTAA	1493	False	NA	NA	False	NA	NA	NA	130671697	130682744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_130671841_130673139_130673487_130677245_130677469_130678599_130678726_130679149_130679567_130680143_130680297_130681646_130681728_130682277
ENSMUSG00000040536.16_1	chr4	-	4822	13	FSM	ENSMUSG00000040536.16	ENSMUST00000041606.14	4922	13	70	30	70	-30	multi-exon	FALSE	canonical	2	6	junction_1	6.35249294896631	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAAAGTGATCATGCT	-1	True	NA	NA	False	AATAAA	-25	NA	15149061	14952274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_14955922_14957825_14957918_14960007_14960086_14965905_14966019_14975132_14975187_14978154_14978232_14989157_14989280_15004968_15005106_15052619_15052718_15065323_15065350_15111193_15111303_15140224_15140250_15148817
ENSMUSG00000040537.18_0	chr5	-	3639	1	ISM	ENSMUSG00000040537.18	ENSMUST00000088761.11	9077	31	291991	1	14249	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACAGCTCTCTTTCATG	NA	False	NA	-4	True	AATAAA	-18	NA	8125991	8122352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_8122400_8126000
ENSMUSG00000040537.18_13	chr5	-	3512	28	NIC	ENSMUSG00000040537.18	novel	9161	30	NA	NA	9	-4	combination_of_known_splicesites	TRUE	canonical	3	7	junction_4	6.89207413418169	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGTGTCCAGTCTGGAA	6096	False	NA	NA	False	NA	NA	NA	8418125	8127842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_8128707_8132145_8132270_8142339_8142407_8142730_8142832_8166544_8166660_8167588_8167758_8171047_8171168_8177326_8177433_8180208_8180273_8180484_8180536_8182398_8182480_8184511_8184605_8184812_8184885_8186805_8186906_8191718_8191771_8193041_8193133_8194220_8194306_8195552_8195720_8196454_8196527_8199207_8199283_8202378_8202450_8208826_8208897_8210735_8210800_8217326_8217410_8282609_8282677_8379979_8380057_8417200_8417362_8417875
ENSMUSG00000040537.18_23	chr5	-	2710	28	NIC	ENSMUSG00000040537.18	novel	8969	30	NA	NA	760	339	combination_of_known_junctions	FALSE	canonical	3	20	junction_18	5.57797943661825	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAAGTTTAGCAGGTTTT	6999	False	NA	-4	True	AATAAA	-14	NA	8417222	8128346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_8128707_8132145_8132270_8142339_8142407_8142730_8142832_8161894_8161986_8166544_8166660_8167588_8167758_8171047_8171168_8177326_8177433_8180208_8180273_8180484_8180536_8182398_8182480_8184511_8184605_8184812_8184885_8186805_8186906_8191718_8191771_8193041_8193133_8194220_8194306_8195552_8195720_8196454_8196527_8199207_8199283_8202378_8202450_8208826_8208897_8210735_8210800_8217326_8217410_8282609_8282677_8379979_8380057_8417200
ENSMUSG00000040537.18_3	chr5	-	3170	29	NIC	ENSMUSG00000040537.18	novel	9161	30	NA	NA	-36	339	combination_of_known_junctions	FALSE	canonical	3	20	junction_18	5.47955383257448	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAAGTTTAGCAGGTTTT	6025	False	NA	-4	True	AATAAA	-14	NA	8418196	8128346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_8128707_8132145_8132270_8142339_8142407_8142730_8142832_8161894_8161986_8166544_8166660_8167588_8167758_8171047_8171168_8177326_8177433_8180208_8180273_8180484_8180536_8182398_8182480_8184511_8184605_8184812_8184885_8186805_8186906_8191718_8191771_8193041_8193133_8194220_8194306_8195552_8195720_8196454_8196527_8199207_8199283_8202378_8202450_8208826_8208897_8210735_8210800_8217326_8217410_8282609_8282677_8379979_8380057_8417200_8417362_8417875
ENSMUSG00000040537.18_7	chr5	-	3254	30	FSM	ENSMUSG00000040537.18	ENSMUST00000115388.9	9161	30	-88	5995	-9	339	multi-exon	TRUE	canonical	1	2	junction_2	8.67774224460105	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAAGTTTAGCAGGTTTT	6052	False	NA	-4	True	AATAAA	-14	NA	8418169	8128346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_8128707_8132145_8132270_8140141_8140253_8142339_8142407_8142730_8142832_8161894_8161986_8166544_8166660_8167588_8167758_8171047_8171168_8177326_8177433_8180208_8180273_8180484_8180536_8182398_8182480_8184511_8184605_8184812_8184885_8186805_8186906_8191718_8191771_8193041_8193133_8194220_8194306_8195552_8195720_8196454_8196527_8199207_8199283_8202378_8202450_8208826_8208897_8210735_8210800_8217326_8217410_8282609_8282677_8379979_8380057_8417200_8417362_8417875
ENSMUSG00000040543.17_0	chr11	-	6593	20	FSM	ENSMUSG00000040543.17	ENSMUST00000075258.13	6555	20	-41	3	-41	-3	multi-exon	TRUE	canonical	1	2	junction_1	2.67542421623975	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGATGCGCTCTGTTTTGG	NA	False	NA	NA	False	NA	NA	NA	72026645	71938356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_71942187_71942666_71942796_71946955_71947140_71948845_71948996_71949211_71949361_71949663_71949781_71952299_71952417_71953920_71954070_71954888_71955084_71956291_71956463_71957931_71958105_71961128_71961314_71961713_71961837_71962224_71962415_71965244_71965481_71965784_71965862_71983353_71983402_72003082_72003191_72010912_72011009_72026479
ENSMUSG00000040548.17_2	chr11	-	784	1	ISM	ENSMUSG00000040548.17	ENSMUST00000042780.14	4934	12	109802	198	63982	48	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTCCAGTCAGTGTACT	1854	False	NA	-10	True	ATTAAA	-18	NA	106393954	106393170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106393200_106394000
ENSMUSG00000040548.17_3	chr11	-	4798	12	FSM	ENSMUSG00000040548.17	ENSMUST00000042780.14	4934	12	-62	198	-62	48	multi-exon	FALSE	canonical	3	112	junction_11	20.6061051692923	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTCCAGTCAGTGTACT	3269	False	NA	-10	True	ATTAAA	-18	NA	106503818	106393170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106503683
ENSMUSG00000040548.17_4	chr11	-	4014	11	ISM	ENSMUSG00000040548.17	ENSMUST00000042780.14	4934	12	44952	198	-868	48	3prime_fragment	FALSE	canonical	3	129	junction_10	16.9425499851705	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTCCAGTCAGTGTACT	NA	False	NA	-10	True	ATTAAA	-18	NA	106458804	106393170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790
ENSMUSG00000040548.17_7	chr11	-	4861	12	NIC	ENSMUSG00000040548.17	novel	4934	12	NA	NA	17	54	combination_of_known_junctions	FALSE	canonical	2	3	junction_11	46.9919986155547	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTCAGTGTACTGCTTTA	2855	False	NA	-4	True	ATTAAA	-24	NA	106504232	106393164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106504040
ENSMUSG00000040549.17_2	chr2	+	6630	44	FSM	ENSMUSG00000040549.17	ENSMUST00000111338.10	6665	44	33	2	33	0	multi-exon	TRUE	canonical	3	508	junction_5	59.4884084586321	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCCATTTCCCAAAATGC	NA	False	NA	9	True	AATAAA	-14	NA	91357139	91451007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91357196_91376666_91376761_91379118_91379313_91380896_91381104_91385611_91385784_91386844_91386978_91387919_91388021_91389393_91389508_91391151_91391257_91393098_91393189_91393293_91393459_91394664_91394794_91395965_91396149_91398481_91398596_91398981_91399093_91400524_91400618_91402692_91402879_91403317_91403413_91406360_91406419_91406507_91406634_91407908_91408049_91408379_91408555_91409767_91409882_91411454_91411584_91416066_91416262_91416582_91416719_91419013_91419103_91422010_91422137_91425027_91425178_91425655_91425860_91426032_91426169_91426706_91426901_91429550_91429724_91430985_91431160_91431350_91431472_91436590_91436771_91437789_91437978_91443084_91443161_91445317_91445507_91445586_91445725_91446138_91446223_91446645_91446806_91450032_91450185_91450326
ENSMUSG00000040549.17_5	chr2	+	6630	44	NNC	ENSMUSG00000040549.17	novel	6665	44	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	109.356725700444	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCATTTCCCAAAATGCT	NA	False	NA	10	True	AATAAA	-15	NA	91357139	91451008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_91357196_91376666_91376761_91379118_91379313_91380896_91381104_91385611_91385784_91386844_91386978_91387920_91388021_91389393_91389508_91391151_91391257_91393098_91393189_91393293_91393459_91394664_91394794_91395965_91396149_91398481_91398596_91398981_91399093_91400524_91400618_91402692_91402879_91403317_91403413_91406360_91406419_91406507_91406634_91407908_91408049_91408379_91408555_91409767_91409882_91411454_91411584_91416066_91416262_91416582_91416719_91419013_91419103_91422010_91422137_91425027_91425178_91425655_91425860_91426032_91426169_91426706_91426901_91429550_91429724_91430985_91431160_91431350_91431472_91436590_91436771_91437789_91437978_91443084_91443161_91445317_91445507_91445586_91445725_91446138_91446223_91446645_91446806_91450032_91450185_91450326
ENSMUSG00000040549.17_61	chr2	+	6576	43	FSM	ENSMUSG00000040549.17	ENSMUST00000099716.11	6574	43	-2	0	0	0	multi-exon	FALSE	canonical	3	508	junction_4	59.822550333003	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCCATTTCCCAAAATGC	NA	False	NA	9	True	AATAAA	-14	NA	91376664	91451007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_91376761_91379118_91379313_91380896_91381104_91385611_91385784_91386844_91386978_91387919_91388021_91389393_91389508_91391151_91391257_91393098_91393189_91393293_91393459_91394664_91394794_91395965_91396149_91398481_91398596_91398981_91399093_91400524_91400618_91402692_91402879_91403317_91403413_91406360_91406419_91406507_91406634_91407908_91408049_91408379_91408555_91409767_91409882_91411454_91411584_91416066_91416262_91416582_91416719_91419013_91419103_91422010_91422137_91425027_91425178_91425655_91425860_91426032_91426169_91426706_91426901_91429550_91429724_91430985_91431160_91431350_91431472_91436590_91436771_91437789_91437978_91443084_91443161_91445317_91445507_91445586_91445725_91446138_91446223_91446645_91446806_91450032_91450185_91450326
ENSMUSG00000040550.18_1	chr4	-	3067	7	NNC	ENSMUSG00000040550.18	novel	3266	7	NA	NA	-10	-4	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_5	96.2042098870938	93	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAACATGTGTATATTCA	13	True	NA	-4	True	AATAAA	-15	NA	14826405	14809510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822769_14825498_14825654_14826290
ENSMUSG00000040550.18_2	chr4	-	3066	7	FSM	ENSMUSG00000040550.18	ENSMUST00000236953.2	3257	7	175	16	-17	-16	multi-exon	FALSE	canonical	3	323	junction_3	17.5752351019521	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGGAGTTGAATCAACA	6	True	NA	-16	True	AATAAA	-3	NA	14826412	14809522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822773_14825498_14825654_14826290
ENSMUSG00000040550.18_3	chr4	-	1463	1	ISM	ENSMUSG00000040550.18	ENSMUST00000117268.9	3266	7	15614	13	15422	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAACATGTGTATATTCA	NA	False	NA	-4	True	AATAAA	-15	NA	14810973	14809510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_14809500_14811000
ENSMUSG00000040554.11_0	chr11	-	1648	7	NNC	ENSMUSG00000040554.11	novel	2309	6	NA	NA	-4789	-8	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	1.63299316185545	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAAGATTTATTTGAT	NA	False	NA	NA	False	AATAAA	-9	NA	71933124	71919550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_71920283_71921032_71921175_71921251_71921429_71922242_71922432_71927437_71927618_71928188_71928286_71932993
ENSMUSG00000040557.15_0	chr5	+	1398	6	FSM	ENSMUSG00000040557.15	ENSMUST00000047196.14	2808	6	4	1406	-1	-1	multi-exon	FALSE	canonical	3	37	junction_1	28.2460616723819	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGACCAGTGTGTACTGTA	3416	False	NA	3	True	NA	NA	NA	134961225	134970085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUSG00000040557.15_1	chr5	+	2521	2	NIC	ENSMUSG00000040557.15	novel	1796	5	NA	NA	3	40	intron_retention	FALSE	canonical	2	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGAAATGGGGTGATCT	3432	False	NA	NA	False	AATAAA	-9	NA	134961241	134970617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_134962456_134969310
ENSMUSG00000040557.15_11	chr5	+	1584	5	NIC	ENSMUSG00000040557.15	novel	1387	6	NA	NA	3	-3	intron_retention	FALSE	canonical	3	98	junction_4	6.17960354715414	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGACCAGTGTGTACTG	3439	False	NA	1	True	NA	NA	NA	134961248	134970083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUSG00000040557.15_13	chr5	+	1376	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111218.8	1387	6	15	-4	1	4	multi-exon	FALSE	canonical	3	11	junction_1	38.4988311510882	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAAAAATACAAC	3451	False	NA	20	True	NA	NA	NA	134961260	134970060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_134961303_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUSG00000040557.15_18	chr5	+	1226	7	NIC	ENSMUSG00000040557.15	novel	1387	6	NA	NA	3	3	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	42.3070784726255	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGTGTGTACTGTAACAC	3432	False	NA	7	True	NA	NA	NA	134961241	134970089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_134961303_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310_134969548_134969745
ENSMUSG00000040557.15_19	chr5	+	1182	7	NIC	ENSMUSG00000040557.15	novel	2808	6	NA	NA	-3	-9	combination_of_known_junctions	FALSE	canonical	3	24	junction_6	36.2583323756991	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAACACAGAGACCAGTGT	3426	False	NA	-5	True	NA	NA	NA	134961235	134970077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310_134969548_134969745
ENSMUSG00000040557.15_2	chr5	+	2198	4	NIC	ENSMUSG00000040557.15	novel	1387	6	NA	NA	6	-11	intron_retention	FALSE	canonical	3	98	junction_3	4.92160768674447	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACAACACAGAGACCAGT	3442	False	NA	-7	True	NA	NA	NA	134961251	134970075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUSG00000040557.15_4	chr5	+	1985	6	FSM	ENSMUSG00000040557.15	ENSMUST00000201847.3	721	6	-139	-1125	0	36	multi-exon	FALSE	canonical	3	6	junction_1	40.4791304254427	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGACAAAGAAATGGGGTG	3429	False	NA	NA	False	AATAAA	-5	NA	134961238	134970613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_134961436_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUSG00000040557.15_8	chr5	+	1288	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111219.8	1790	6	2	500	2	-9	multi-exon	FALSE	canonical	2	10	junction_1	38.8947297201048	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAACACAGAGACCAGTGT	3419	False	NA	-5	True	NA	NA	NA	134961228	134970077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_134961265_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUSG00000040560.11_2	chr18	+	6986	27	FSM	ENSMUSG00000040560.11	ENSMUST00000236879.2	6987	27	1	0	1	0	multi-exon	FALSE	canonical	3	34	junction_9	8.74837262973172	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGGTGGTTTTTATCC	NA	False	NA	2	True	AATAAA	-11	NA	63841786	64122825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_63841991_63853288_63853461_63853827_63853935_63857191_63857271_63860689_63860865_63861509_63861587_63863160_63863281_63868649_63868796_63869474_63869578_63871813_63871956_63872175_63872425_63873097_63873319_63888106_63888303_63893641_63893857_63910598_63911369_63912939_63913029_63927295_63927415_63929228_63929353_63958195_63958310_63998355_63998578_64037100_64037288_64057882_64058001_64059649_64059800_64060336_64060420_64068919_64069020_64112390_64112496_64120226
ENSMUSG00000040560.11_21	chr18	+	4459	13	ISM	ENSMUSG00000040560.11	ENSMUST00000236879.2	6987	27	69137	-3	-120	3	3prime_fragment	FALSE	canonical	3	37	junction_4	8.66346094557802	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTGGTTTTTATCCTGT	NA	False	NA	5	True	AATAAA	-14	NA	63910922	64122828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_63911369_63912939_63913029_63927295_63927415_63929228_63929353_63958195_63958310_63998355_63998578_64037100_64037288_64057882_64058001_64059649_64059800_64060336_64060420_64068919_64069020_64112390_64112496_64120226
ENSMUSG00000040560.11_40	chr18	+	4911	14	ISM	ENSMUSG00000040560.11	ENSMUST00000236879.2	6987	27	51940	0	-17317	0	3prime_fragment	FALSE	canonical	3	37	junction_5	8.38073304613221	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGGTGGTTTTTATCC	NA	False	NA	2	True	AATAAA	-11	NA	63893725	64122825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_63893857_63910598_63911369_63912939_63913029_63927295_63927415_63929228_63929353_63958195_63958310_63998355_63998578_64037100_64037288_64057882_64058001_64059649_64059800_64060336_64060420_64068919_64069020_64112390_64112496_64120226
ENSMUSG00000040560.11_5	chr18	+	6939	28	NNC	ENSMUSG00000040560.11	novel	7135	28	NA	NA	8	1	intron_retention	TRUE	non_canonical	0	0	junction_27	12.7134721108694	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAGGTGGTTTTTATCCT	NA	False	NA	3	True	AATAAA	-12	NA	63841793	64122826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_63841991_63853288_63853461_63853827_63853935_63857191_63857271_63860689_63860865_63861509_63861587_63863160_63863281_63868649_63868796_63869474_63869578_63871813_63871956_63872175_63872425_63873097_63873319_63888106_63888303_63893641_63893857_63910598_63911369_63912939_63913029_63927295_63927415_63929228_63929353_63958195_63958310_63998355_63998578_64037100_64037288_64057882_64058001_64059649_64059800_64060336_64060420_64068919_64069020_64112390_64112496_64120226_64122390_64122430
ENSMUSG00000040562.13_0	chr3	-	1031	8	FSM	ENSMUSG00000040562.13	ENSMUST00000012348.9	1064	8	32	1	0	-1	multi-exon	FALSE	canonical	3	626	junction_6	40.3692143766479	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTTCAGTGTATTATTT	2074	False	NA	-5	True	AATAAA	-12	NA	107893737	107889018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107892999_107893349_107893426_107893673
ENSMUSG00000040562.13_1	chr3	-	1382	7	NIC	ENSMUSG00000040562.13	novel	1064	8	NA	NA	0	-1	intron_retention	FALSE	canonical	3	637	junction_1	38.7298334620742	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTTCAGTGTATTATTT	2074	False	NA	-5	True	AATAAA	-12	NA	107893737	107889018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107893426_107893673
ENSMUSG00000040563.14_0	chr9	+	2620	10	NIC	ENSMUSG00000040563.14	novel	2626	10	NA	NA	-14	-4	combination_of_known_junctions	TRUE	canonical	3	12	junction_8	8.37692303332034	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGAAGTTTGGCCTTCTG	83	False	NA	NA	False	AATAAA	-12	NA	21848314	21860196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21848455_21849690_21849861_21850594_21850675_21851980_21852170_21852297_21852434_21854646_21854919_21855691_21855869_21858241_21858349_21858676_21858729_21858899
ENSMUSG00000040563.14_1	chr9	+	2633	10	FSM	ENSMUSG00000040563.14	ENSMUST00000046371.13	2626	10	-11	4	-11	-4	multi-exon	FALSE	canonical	3	9	junction_8	8.89999306422257	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGAAGTTTGGCCTTCTG	86	False	NA	NA	False	AATAAA	-12	NA	21848317	21860196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21848455_21849690_21849861_21850594_21850675_21851980_21852170_21852297_21852434_21854646_21854919_21855691_21855869_21858241_21858365_21858676_21858729_21858899
ENSMUSG00000040564.15_1	chr7	-	407	4	FSM	ENSMUSG00000040564.15	ENSMUST00000045035.12	432	4	22	3	0	-3	multi-exon	FALSE	canonical	3	965	junction_3	145.90027035235	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGCTCCCTGAAGTGCTT	NA	False	NA	-7	True	AATAAA	-16	NA	19426563	19423408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19423562_19425812_19425961_19426335_19426412_19426533
ENSMUSG00000040564.15_2	chr7	-	408	4	NNC	ENSMUSG00000040564.15	novel	432	4	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	542.929297627437	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGCTCCCTGAAGTGCTT	NA	False	NA	-7	True	AATAAA	-16	NA	19426565	19423408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_19423561_19425812_19425961_19426335_19426412_19426533
ENSMUSG00000040564.15_4	chr7	-	275	2	ISM	ENSMUSG00000040564.15	ENSMUST00000108451.4	532	3	629	3	482	-3	3prime_fragment	FALSE	canonical	3	1274	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGCTCCCTGAAGTGCTT	NA	False	NA	-7	True	AATAAA	-16	NA	19425934	19423408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19423562_19425812
ENSMUSG00000040565.9_0	chr19	+	7135	38	FSM	ENSMUSG00000040565.9	ENSMUST00000099494.4	7204	38	70	-1	70	1	multi-exon	TRUE	canonical	3	111	junction_9	14.2774858907343	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCTGTGCAATTGTGTG	NA	False	NA	10	True	AATAAA	-12	NA	36903548	36990153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_36903802_36922611_36922736_36926467_36926583_36928433_36928578_36933770_36933935_36935772_36935910_36939038_36939169_36939830_36939900_36943017_36943108_36943891_36943988_36944075_36944253_36946455_36946597_36947313_36947439_36950297_36950419_36955714_36955820_36957976_36958127_36958386_36958530_36959046_36959222_36960848_36961053_36963854_36964282_36965380_36965572_36966275_36966430_36966787_36966898_36968122_36968325_36969835_36969985_36971669_36971823_36971990_36972113_36972198_36972367_36973929_36974008_36974905_36975036_36977491_36977634_36977716_36977848_36979813_36979940_36980887_36981041_36981831_36982044_36986979_36987140_36987411_36987583_36988660
ENSMUSG00000040565.9_31	chr19	+	4351	19	ISM	ENSMUSG00000040565.9	ENSMUST00000099494.4	7204	38	60496	0	25260	0	3prime_fragment	FALSE	canonical	3	121	junction_3	11.7248548913077	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTCTGTGCAATTGTGT	NA	False	NA	9	True	AATAAA	-11	NA	36963974	36990152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_36964282_36965380_36965572_36966275_36966430_36966787_36966898_36968122_36968325_36969835_36969985_36971669_36971823_36971990_36972113_36972198_36972367_36973929_36974008_36974905_36975036_36977491_36977634_36977716_36977848_36979813_36979940_36980887_36981041_36981831_36982044_36986979_36987140_36987411_36987583_36988660
ENSMUSG00000040570.15_12	chr5	-	3490	9	NIC	ENSMUSG00000040570.15	novel	3677	10	NA	NA	56	-9	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	18.0398863632785	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATACAGTACTGGTCTT	NA	False	NA	-8	True	ATTAAA	-10	NA	8672896	8540342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_8542590_8570858_8571017_8578605_8578775_8598235_8598317_8609411_8609502_8619494_8619581_8629024_8629159_8653869_8653986_8672487
ENSMUSG00000040570.15_2	chr5	-	3762	11	FSM	ENSMUSG00000040570.15	ENSMUST00000115378.2	1891	11	53	-1924	53	-9	multi-exon	FALSE	canonical	3	15	junction_2	15.6920361967464	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATACAGTACTGGTCTT	NA	False	NA	-8	True	ATTAAA	-10	NA	8672899	8540342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_8542590_8544783_8544906_8562260_8562408_8570858_8571017_8578605_8578775_8598235_8598317_8609411_8609502_8619494_8619581_8629024_8629159_8653869_8653986_8672487
ENSMUSG00000040570.15_5	chr5	-	3604	10	FSM	ENSMUSG00000040570.15	ENSMUST00000047485.15	3677	10	64	9	64	-9	multi-exon	FALSE	canonical	3	27	junction_2	10.9352753469485	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATACAGTACTGGTCTT	NA	False	NA	-8	True	ATTAAA	-10	NA	8672888	8540342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_8542590_8544783_8544906_8570858_8571017_8578605_8578775_8598235_8598317_8609411_8609502_8619494_8619581_8629024_8629159_8653869_8653986_8672487
ENSMUSG00000040584.9_0	chr5	+	4344	28	FSM	ENSMUSG00000040584.9	ENSMUST00000047753.5	4997	28	4	649	4	-644	multi-exon	FALSE	canonical	0	0	junction_9	64.0965278576142	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAGCATTCATATTTT	NA	False	NA	NA	False	TATAAA	-13	NA	8710080	8797926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_8710223_8710661_8710733_8714545_8714595_8724682_8724843_8733383_8733436_8735220_8735413_8736126_8736299_8744065_8744191_8748485_8748658_8751608_8751723_8751866_8751978_8752152_8752279_8752368_8752573_8752792_8752964_8763186_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ENSMUSG00000040584.9_1	chr5	+	3066	14	ISM	ENSMUSG00000040584.9	ENSMUST00000047753.5	4997	28	53107	69	-6635	-64	3prime_fragment	FALSE	canonical	3	48	junction_7	59.5291187263121	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAAATATCCATA	NA	False	NA	NA	False	AATAAA	-9	NA	8763183	8798506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ENSMUSG00000040584.9_10	chr5	+	3215	15	NNC	ENSMUSG00000040584.9	novel	2705	10	NA	NA	-8045	-71	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	59.5979728459529	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTTTTAAAAGAAAAAAAT	NA	False	NA	NA	False	AATAAA	-2	NA	8761773	8798499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_8761933_8763186_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ENSMUSG00000040584.9_18	chr5	+	2356	6	ISM	ENSMUSG00000040584.9	ENSMUST00000126846.2	2705	10	13426	64	-43	-64	3prime_fragment	FALSE	canonical	3	112	junction_1	56.9582303095874	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAAATATCCATA	NA	False	NA	NA	False	AATAAA	-9	NA	8783244	8798506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ENSMUSG00000040584.9_2	chr5	+	3443	15	NNC	ENSMUSG00000040584.9	novel	2705	10	NA	NA	-8054	-64	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	59.4603280536266	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAAATATCCATA	NA	False	NA	NA	False	AATAAA	-9	NA	8761764	8798506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_8762145_8763186_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ENSMUSG00000040586.9_0	chrX	-	3531	23	FSM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	12	910	12	-910	multi-exon	FALSE	canonical	3	107	junction_14	25.8655535317559	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAACTTTGTGTATTTT	NA	False	NA	NA	False	ATTAAA	-7	NA	165223688	165173938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_165174055_165174886_165174955_165175413_165175567_165176172_165176328_165183915_165184030_165186537_165186636_165188421_165188579_165188992_165189605_165191584_165191697_165192483_165192615_165193601_165193792_165194811_165194904_165196296_165196371_165197971_165198092_165207971_165208079_165209815_165209990_165210163_165210301_165211523_165211632_165214684_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
ENSMUSG00000040591.19_0	chr2	-	1592	9	FSM	ENSMUSG00000040591.19	ENSMUST00000102594.11	1977	9	-30	415	-3	-1	multi-exon	TRUE	canonical	3	72	junction_5	19.7673974007708	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAATGAGTCTAAAGCCA	NA	False	NA	-8	True	AATAAA	-17	NA	91275017	91108589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
ENSMUSG00000040592.12_0	chr11	-	1245	6	FSM	ENSMUSG00000040592.12	ENSMUST00000167143.2	1195	6	-53	3	-53	-3	multi-exon	FALSE	canonical	3	38	junction_4	7.4027022093287	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAGATCTTCGTGATAT	5036	False	NA	-6	True	AATAAA	-14	NA	106205408	106202172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106202732_106202832_106202875_106203147_106203267_106203458_106203768_106204486_106204538_106205243
ENSMUSG00000040592.12_2	chr11	-	1078	5	ISM	ENSMUSG00000040592.12	ENSMUST00000167143.2	1195	6	818	5	818	-5	3prime_fragment	FALSE	canonical	3	38	junction_4	7.56637297521078	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAGAGATCTTCGTGAT	5907	False	NA	-8	True	AATAAA	-12	NA	106204537	106202174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106202732_106202832_106202875_106203147_106203267_106203458_106203768_106204486
ENSMUSG00000040594.20_1	chr11	-	3648	29	NIC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	1	-1412	combination_of_known_junctions	FALSE	canonical	3	41	junction_15	43.2524624756104	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACATGTTTCAAGTCTAT	NA	False	NA	-2	True	TATAAA	-45	NA	33463745	33163206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33287854_33287915_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
ENSMUSG00000040594.20_10	chr11	-	3493	27	NIC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	0	-1417	combination_of_known_splicesites	FALSE	canonical	3	45	junction_25	39.8224610285058	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCAGCACATGTTTCAAG	NA	False	NA	-7	True	TATAAA	-40	NA	33463746	33163211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33454681_33454829_33463601
ENSMUSG00000040594.20_16	chr11	-	4323	28	NIC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	7	-640	combination_of_known_splicesites	FALSE	canonical	3	41	junction_15	49.7087263565917	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTCTGATCAGACCTG	NA	False	NA	NA	False	AATAAA	-11	NA	33463739	33162434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33287854_33287915_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33454681_33454829_33463601
ENSMUSG00000040594.20_3	chr11	-	3577	28	FSM	ENSMUSG00000040594.20	ENSMUST00000102815.10	5001	28	3	1421	3	-1421	multi-exon	FALSE	canonical	3	105	junction_14	30.62978637606	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAAAGCAGCACATGTTT	NA	False	NA	-11	True	TATAAA	-36	NA	33463743	33163215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
ENSMUSG00000040594.20_59	chr11	-	3290	20	ISM	ENSMUSG00000040594.20	ENSMUST00000102815.10	5001	28	1	84614	1	-15	5prime_fragment	FALSE	canonical	3	105	junction_6	31.5999053261319	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATCTACTTTAAAGCAAA	NA	False	NA	NA	False	AATAAA	-13	NA	33463745	33246408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
ENSMUSG00000040596.16_0	chr1	-	3150	1	ISM	ENSMUSG00000040596.16	ENSMUST00000131487.8	8692	5	11373	2641	11271	528	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATAGGCTCTGGTGATTT	NA	False	NA	NA	False	AATAAA	-15	NA	166225587	166222437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_166222400_166225600
ENSMUSG00000040596.16_1	chr1	-	6095	6	FSM	ENSMUSG00000040596.16	ENSMUST00000128861.3	4848	6	46	-1293	11	521	multi-exon	FALSE	canonical	0	0	junction_2	0.8	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACAATAGGCTCTG	1357	False	NA	NA	False	AATAAA	-8	NA	166237386	166222444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_166227735_166229434_166229534_166231066_166231194_166235967_166236102_166236566_166236901_166237275
ENSMUSG00000040599.14_0	chr11	+	3353	3	NNC	ENSMUSG00000040599.14	novel	3003	3	NA	NA	-11	-17	intron_retention	FALSE	canonical	2	6	junction_1	59	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATACTTCAGTATTT	NA	False	NA	-1	True	AATAAA	-20	NA	70910425	70918180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_70911372_70915375_70915538_70915935
ENSMUSG00000040599.14_1	chr11	+	2713	4	FSM	ENSMUSG00000040599.14	ENSMUST00000164220.8	1416	4	-12	-1285	-12	-20	multi-exon	FALSE	canonical	3	11	junction_1	46.3057471835	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATAAATACTTCAGTA	NA	False	NA	-4	True	AATAAA	-17	NA	70910424	70918177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70910550_70910831_70911016_70915375_70915538_70915935
ENSMUSG00000040599.14_2	chr11	+	2981	3	FSM	ENSMUSG00000040599.14	ENSMUST00000048807.12	3003	3	2	20	2	-20	multi-exon	FALSE	canonical	3	76	junction_1	24	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATAAATACTTCAGTA	NA	False	NA	-4	True	AATAAA	-17	NA	70910438	70918177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70911016_70915375_70915538_70915935
ENSMUSG00000040599.14_3	chr11	+	2517	3	FSM	ENSMUSG00000040599.14	ENSMUST00000133413.8	344	3	0	-2173	0	-20	multi-exon	FALSE	canonical	3	36	junction_1	44	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATAAATACTTCAGTA	NA	False	NA	-4	True	AATAAA	-17	NA	70910436	70918177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70910550_70915375_70915538_70915935
ENSMUSG00000040599.14_5	chr11	+	1239	1	ISM	ENSMUSG00000040599.14	ENSMUST00000048807.12	3003	3	6502	20	6222	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATAAATACTTCAGTA	NA	False	NA	-4	True	AATAAA	-17	NA	70916938	70918177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_70916900_70918200
ENSMUSG00000040606.15_1	chr4	-	4886	15	NIC	ENSMUSG00000040606.15	novel	4898	15	NA	NA	24	-6	combination_of_known_junctions	FALSE	canonical	3	14	junction_3	104.248232011632	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTATCCTTCTTTCTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	141966688	141829706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_141832266_141834122_141834238_141835856_141836024_141836587_141836690_141839418_141839651_141844395_141844515_141845385_141845592_141868983_141869108_141870604_141870656_141874328_141874457_141878156_141878347_141881740_141881912_141886354_141886492_141937325_141937518_141966295
ENSMUSG00000040606.15_10	chr4	-	3826	8	NIC	ENSMUSG00000040606.15	novel	3843	8	NA	NA	11	-5	combination_of_known_junctions	FALSE	canonical	3	79	junction_3	56.4110280143223	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGATGGAATTCTAT	NA	False	NA	-12	True	AATAAA	-10	NA	141966701	141866559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_141869108_141870604_141870656_141874328_141874460_141878156_141878347_141881740_141881912_141886354_141886492_141937325_141937518_141966295
ENSMUSG00000040606.15_12	chr4	-	3792	8	NIC	ENSMUSG00000040606.15	novel	3843	8	NA	NA	37	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	83.791285894398	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGATGGAATTCTAT	NA	False	NA	-12	True	AATAAA	-10	NA	141966675	141866559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_141869108_141870604_141870656_141874333_141874457_141878156_141878347_141881740_141881912_141886354_141886492_141937325_141937518_141966295
ENSMUSG00000040606.15_14	chr4	-	1666	1	ISM	ENSMUSG00000040606.15	ENSMUST00000036476.10	3843	8	98487	9	5551	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGATGGAATTCTAT	7091	False	NA	-12	True	AATAAA	-10	NA	141868225	141866559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141866600_141868200
ENSMUSG00000040606.15_8	chr4	-	3806	8	FSM	ENSMUSG00000040606.15	ENSMUST00000036476.10	3843	8	28	9	28	-5	multi-exon	FALSE	canonical	3	169	junction_3	28.2510610239614	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGATGGAATTCTAT	NA	False	NA	-12	True	AATAAA	-10	NA	141966684	141866559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141869108_141870604_141870656_141874328_141874457_141878156_141878347_141881740_141881912_141886354_141886492_141937325_141937518_141966295
ENSMUSG00000040610.8_0	chr11	-	1568	3	FSM	ENSMUSG00000040610.8	ENSMUST00000037746.8	1533	3	-37	2	-37	-2	multi-exon	FALSE	canonical	3	12	junction_1	1	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAATGCCGCTTTTATTT	9453	False	NA	NA	False	AATAAA	-15	NA	33153626	33150753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_33151490_33152428_33152673_33153038
ENSMUSG00000040610.8_1	chr11	-	2480	2	NIC	ENSMUSG00000040610.8	novel	1533	3	NA	NA	-6	2	intron_retention	FALSE	canonical	3	14	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCGCTTTTATTTCGTT	9484	False	NA	NA	False	AATAAA	-19	NA	33153595	33150749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_33152673_33153038
ENSMUSG00000040613.15_0	chr6	-	2151	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112585.8	2127	8	-35	11	-19	-11	multi-exon	FALSE	canonical	3	36	junction_1	6.10453160549186	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACCATGTATCAATTGTT	8689	False	NA	NA	False	AGTAAA	-1	NA	122579365	122554770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568164_122573590_122573737_122577016_122577085_122579215
ENSMUSG00000040613.15_3	chr6	-	1697	5	ISM	ENSMUSG00000040613.15	ENSMUST00000112587.11	2072	7	9010	16	9010	-14	3prime_fragment	FALSE	canonical	3	36	junction_1	2.12132034355964	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAACCATGTATCAATT	9980	False	NA	NA	False	NA	NA	NA	122568076	122554773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045
ENSMUSG00000040613.15_4	chr6	-	2126	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112586.8	2265	8	35	104	-22	-95	multi-exon	FALSE	canonical	2	5	junction_5	14.3099793921613	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAACAAAACAAAAC	8686	False	NA	NA	False	NA	NA	NA	122579368	122554854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568220_122573590_122573737_122577016_122577085_122579215
ENSMUSG00000040613.15_9	chr6	-	2098	7	NIC	ENSMUSG00000040613.15	novel	2265	8	NA	NA	-22	-95	combination_of_known_junctions	FALSE	canonical	2	5	junction_4	18.3462076008458	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAACAAAACAAAAC	8686	False	NA	NA	False	NA	NA	NA	122579368	122554854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_122555895_122557646_122557766_122558311_122558710_122568045_122568220_122573590_122573737_122577016_122577085_122579215
ENSMUSG00000040616.4_0	chr4	-	529	1	ISM	ENSMUSG00000040616.4	ENSMUST00000036572.4	1875	3	52780	4	52780	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACACCTGACCTCATTCA	NA	False	NA	-10	True	AATAAA	-14	NA	141758835	141758306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141758300_141758800
ENSMUSG00000040616.4_1	chr4	-	1821	3	NNC	ENSMUSG00000040616.4	novel	1875	3	NA	NA	-373	-4	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	75.5	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACACCTGACCTCATTCA	9827	False	NA	-10	True	AATAAA	-14	NA	141811988	141758306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_141759406_141764715_141765245_141811795
ENSMUSG00000040616.4_2	chr4	-	1799	3	FSM	ENSMUSG00000040616.4	ENSMUST00000036572.4	1875	3	72	4	72	-4	multi-exon	FALSE	canonical	3	173	junction_2	4	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACACCTGACCTCATTCA	9872	False	NA	-10	True	AATAAA	-14	NA	141811543	141758306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141759406_141764715_141765245_141811372
ENSMUSG00000040616.4_5	chr4	-	1297	2	ISM	ENSMUSG00000040616.4	ENSMUST00000036572.4	1875	3	46702	4	46702	-4	3prime_fragment	FALSE	canonical	3	181	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACACCTGACCTCATTCA	NA	False	NA	-10	True	AATAAA	-14	NA	141764913	141758306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141759406_141764715
ENSMUSG00000040618.8_0	chr14	+	2130	10	FSM	ENSMUSG00000040618.8	ENSMUST00000048781.4	3400	10	123	1147	0	-2	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	2202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCACAGGACTCCCCATG	9014	False	NA	25	True	ATTAAA	-22	NA	55777845	55786327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
ENSMUSG00000040620.16_14	chr11	-	4553	10	ISM	ENSMUSG00000040620.16	ENSMUST00000108527.8	5184	12	4624	14	1141	-14	3prime_fragment	FALSE	canonical	3	85	junction_7	14.1534797012721	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCATTCGATAAGTCTTG	NA	False	NA	-12	True	ATTAAA	-16	NA	70890639	70874930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_70878254_70879892_70879980_70882933_70883138_70883484_70883613_70884435_70884525_70884682_70884843_70885964_70886077_70886713_70886900_70890195_70890367_70890546
ENSMUSG00000040620.16_2	chr11	-	5174	12	FSM	ENSMUSG00000040620.16	ENSMUST00000108527.8	5184	12	-8	18	-8	-18	multi-exon	FALSE	canonical	3	85	junction_7	13.0123907891512	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCATTCATTCGATAAGT	NA	False	NA	-16	True	ATTAAA	-12	NA	70895271	70874934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70878254_70879892_70879980_70882933_70883138_70883484_70883613_70884435_70884525_70884682_70884843_70885964_70886077_70886713_70886900_70890195_70890367_70890546_70890775_70892344_70892506_70894942
ENSMUSG00000040620.16_25	chr11	-	1953	11	ISM	ENSMUSG00000040620.16	ENSMUST00000108527.8	5184	12	-5	4875	-5	-2215	5prime_fragment	FALSE	canonical	3	85	junction_6	13.6400146627487	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAACAAGAATATAAAA	NA	False	NA	NA	False	AAAACA	-23	NA	70895268	70879791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_70879980_70882933_70883138_70883484_70883613_70884435_70884525_70884682_70884843_70885964_70886077_70886713_70886900_70890195_70890367_70890546_70890775_70892344_70892506_70894942
ENSMUSG00000040620.16_5	chr11	-	2360	1	ISM	ENSMUSG00000040620.16	ENSMUST00000108527.8	5184	12	17968	19	7511	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCCATTCATTCGATAAG	NA	False	NA	-17	True	ATTAAA	-11	NA	70877295	70874935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_70874900_70877300
ENSMUSG00000040621.15_0	chrX	+	1861	4	FSM	ENSMUSG00000040621.15	ENSMUST00000056410.11	1862	4	-29	30	-29	-28	multi-exon	FALSE	canonical	3	11	junction_1	17.1529071070248	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	164953420	164973478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_164953547_164961787_164961827_164963348_164963806_164972239
ENSMUSG00000040621.15_10	chrX	+	539	1	ISM	ENSMUSG00000040621.15	ENSMUST00000130880.9	1389	5	18794	18	10825	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCAGAATGTCATAAAAGC	NA	False	NA	NA	False	TTTAAA	-3	NA	164972243	164972782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_164972200_164972800
ENSMUSG00000040621.15_14	chrX	+	4742	5	NNC	ENSMUSG00000040621.15	novel	1389	5	NA	NA	-3677	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.1009478460092	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTCATAAAAGCCTTAAG	NA	False	NA	NA	False	TTTAAA	-9	NA	164957720	164972788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_164960094_164960314_164961639_164961787_164961827_164963348_164963806_164972239
ENSMUSG00000040621.15_9	chrX	+	1410	2	ISM	ENSMUSG00000040621.15	ENSMUST00000152248.2	964	3	1548	-472	1548	-6	3prime_fragment	FALSE	canonical	3	53	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGTCATTTATTCCTACA	NA	False	NA	NA	False	CATAAA	-12	NA	164962966	164972810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_164963806_164972239
ENSMUSG00000040624.19_1	chr10	+	7312	16	FSM	ENSMUSG00000040624.19	ENSMUST00000239159.2	4478	16	9	-2843	9	-3	multi-exon	FALSE	canonical	3	8	junction_1	7.74137512906389	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTAAATTTTCATTGAAT	NA	False	NA	NA	False	AATAAA	-14	NA	3784887	3917295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_3785077_3822926_3823442_3853556_3853658_3869135_3869206_3880206_3880254_3883596_3883748_3887849_3887982_3890168_3890352_3890437_3890534_3890633_3890727_3895890_3895925_3897519_3897604_3899666_3899706_3902310_3902334_3906545_3908206_3913400
ENSMUSG00000040624.19_10	chr10	+	3293	9	NIC	ENSMUSG00000040624.19	novel	5405	15	NA	NA	-17693	-2328	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	9.836157786453	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTTTTCTGTGTGCAAG	NA	False	NA	NA	False	AATAAA	-12	NA	3890197	3911198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_3890352_3890437_3890534_3890633_3890727_3895890_3895925_3897519_3897604_3899666_3899706_3902310_3902334_3906545_3908206_3910088
ENSMUSG00000040624.19_11	chr10	+	4173	2	ISM	ENSMUSG00000040624.19	ENSMUST00000154727.2	5405	15	54342	3	37	-3	intron_retention	FALSE	canonical	3	27	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTAAATTTTCATTGAAT	NA	False	NA	NA	False	AATAAA	-14	NA	3907927	3917295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_3908206_3913400
ENSMUSG00000040624.19_12	chr10	+	3009	1	ISM	ENSMUSG00000040624.19	ENSMUST00000120274.8	7369	17	223921	10	6394	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGTAAATTTTCATTGA	NA	False	NA	NA	False	AATAAA	-12	NA	3914284	3917293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_3914300_3917300
ENSMUSG00000040624.19_5	chr10	+	7278	15	ISM	ENSMUSG00000040624.19	ENSMUST00000042438.13	7190	16	105	8	105	-3	3prime_fragment	FALSE	canonical	3	11	junction_4	7.16994862361692	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTAAATTTTCATTGAAT	NA	False	NA	NA	False	AATAAA	-14	NA	3822771	3917295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_3823442_3853556_3853658_3869135_3869206_3880206_3880254_3883596_3883748_3887849_3887982_3890168_3890352_3890437_3890534_3890633_3890727_3895890_3895925_3897519_3897604_3899666_3899706_3902310_3902334_3906545_3908206_3913400
ENSMUSG00000040624.19_8	chr10	+	3252	8	ISM	ENSMUSG00000040624.19	ENSMUST00000154727.2	5405	15	36630	8006	-17675	-4234	internal_fragment	FALSE	canonical	3	21	junction_6	4.51753951452626	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGATCAAAGAGACCAGAAT	NA	False	NA	NA	False	AATAAA	-17	NA	3890215	3909292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_3890352_3890437_3890534_3890633_3890727_3895890_3895925_3897519_3897604_3899666_3899706_3902310_3902334_3906545
ENSMUSG00000040624.19_9	chr10	+	6051	9	ISM	ENSMUSG00000040624.19	ENSMUST00000154727.2	5405	15	36638	4	-17667	-4	intron_retention	FALSE	canonical	3	21	junction_6	4.22603537609424	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGTAAATTTTCATTGAA	NA	False	NA	NA	False	AATAAA	-13	NA	3890223	3917294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_3890352_3890437_3890534_3890633_3890727_3895890_3895925_3897519_3897604_3899666_3899706_3902310_3902334_3906545_3908206_3913400
ENSMUSG00000040629.9_0	chr1	-	1536	12	FSM	ENSMUSG00000040629.9	ENSMUST00000038782.4	1546	12	4	6	4	-6	multi-exon	FALSE	canonical	3	15	junction_10	4.55453638177285	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGATCTTGGCACTCTTG	NA	False	NA	-13	True	ATTAAA	-16	NA	166066309	166028959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_166029305_166029843_166029920_166032358_166032492_166033421_166033485_166053158_166053301_166053405_166053461_166054134_166054260_166061733_166061776_166062969_166063126_166064441_166064542_166065831_166065925_166066103
ENSMUSG00000040631.9_1	chr8	-	2540	9	FSM	ENSMUSG00000040631.9	ENSMUST00000046461.9	2590	9	38	12	38	-12	multi-exon	FALSE	canonical	0	0	junction_8	2.10653744329409	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAGACAACTACTGTT	NA	False	NA	-10	True	AATAAA	-6	NA	95602920	95590499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_95591876_95591969_95592091_95592248_95592388_95593084_95593275_95593375_95593496_95593755_95593871_95594019_95594128_95597487_95597697_95602758
ENSMUSG00000040640.12_1	chr14	+	2666	5	NIC	ENSMUSG00000040640.12	novel	1099	4	NA	NA	-64	1400	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	19.8289560996034	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGACATTCTTGTTTGTTT	2262	False	NA	NA	False	AATAAA	-19	NA	27344320	27377159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_27344572_27345639_27345707_27350368_27350423_27374643_27375441_27375662
ENSMUSG00000040640.12_2	chr14	+	1087	3	NIC	ENSMUSG00000040640.12	novel	1356	4	NA	NA	-5	1	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	11	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTATTGTCTGTTTAT	2321	False	NA	16	True	ATTAAA	-13	NA	27344379	27375760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_27344572_27374643_27375441_27375662
ENSMUSG00000040640.12_3	chr14	+	2542	4	NIC	ENSMUSG00000040640.12	novel	3339	8	NA	NA	-5	1389	combination_of_known_junctions	FALSE	canonical	3	16	junction_2	17.7451088722749	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTAAATTTTAATGACATT	2321	False	NA	NA	False	AATAAA	-8	NA	27344379	27377148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_27344572_27345639_27345707_27374643_27375441_27375662
ENSMUSG00000040640.12_4	chr14	+	1141	4	NIC	ENSMUSG00000040640.12	novel	1356	4	NA	NA	-5	1	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	19.3448241713959	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTATTGTCTGTTTAT	2321	False	NA	16	True	ATTAAA	-13	NA	27344379	27375760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_27344572_27350368_27350423_27374643_27375441_27375662
ENSMUSG00000040640.12_5	chr14	+	6090	16	FSM	ENSMUSG00000040640.12	ENSMUST00000090302.6	6083	16	-9	2	5	0	multi-exon	FALSE	canonical	0	0	junction_2	8.37191070717365	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCATCTTACCTTTTACA	2331	False	NA	13	True	AATAAA	-21	NA	27344389	28200492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_27344572_27374643_27375441_27498782_27499200_27598543_27598619_27620522_27620679_27634769_27634938_27688352_27688521_27733592_27733731_27743918_27744060_27746989_27747131_27762299_27762494_27802088_27802225_27863177_27863339_27993534_27993683_28024832_28024968_28197559
ENSMUSG00000040640.12_6	chr14	+	1948	2	ISM	ENSMUSG00000040640.12	ENSMUST00000210327.2	1099	4	29433	-1399	205	1399	3prime_fragment	FALSE	canonical	3	57	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGACATTCTTGTTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	27374988	27377158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_27375441_27375662
ENSMUSG00000040640.12_7	chr14	+	5678	15	ISM	ENSMUSG00000040640.12	ENSMUST00000090302.6	6083	16	30469	8	84	-6	3prime_fragment	FALSE	canonical	0	0	junction_1	3.04054237911325	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGAATTCATCTTACCT	NA	False	NA	7	True	AATAAA	-15	NA	27374867	28200486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_27375441_27498782_27499200_27598543_27598619_27620522_27620679_27634769_27634938_27688352_27688521_27733592_27733731_27743918_27744060_27746989_27747131_27762299_27762494_27802088_27802225_27863177_27863339_27993534_27993683_28024832_28024968_28197559
ENSMUSG00000040648.16_0	chr1	-	1143	1	ISM	ENSMUSG00000040648.16	ENSMUST00000137758.2	4055	3	7841	118	7841	-118	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAGTGACTTGAATTT	NA	False	NA	-40	True	ATTAAA	-12	NA	97635033	97633890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_97633900_97635000
ENSMUSG00000040648.16_1	chr1	-	5394	28	FSM	ENSMUSG00000040648.16	ENSMUST00000042509.13	5882	28	370	118	370	-118	multi-exon	FALSE	canonical	0	0	junction_16	45.2326708589218	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAGTGACTTGAATTT	9204	False	NA	-40	True	ATTAAA	-12	NA	97697766	97633890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_97635556_97639447_97639574_97640728_97640870_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
ENSMUSG00000040648.16_13	chr1	-	5565	30	NIC	ENSMUSG00000040648.16	novel	6239	31	NA	NA	382	-118	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	69.3342384617281	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAGTGACTTGAATTT	9216	False	NA	-40	True	ATTAAA	-12	NA	97697754	97633890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_97635556_97639447_97639574_97640728_97640870_97644266_97644330_97645166_97645287_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
ENSMUSG00000040648.16_3	chr1	-	5395	28	NNC	ENSMUSG00000040648.16	novel	5882	28	NA	NA	366	-118	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	53.5000737150627	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAGTGACTTGAATTT	9200	False	NA	-40	True	ATTAAA	-12	NA	97697770	97633890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_97635556_97639447_97639574_97640728_97640870_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668668_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
ENSMUSG00000040649.16_0	chr6	-	2697	2	ISM	ENSMUSG00000040649.16	ENSMUST00000135320.2	429	3	366	4	366	-4	3prime_fragment	FALSE	canonical	3	70	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGTTGGAGTGTGATT	NA	False	NA	NA	False	AATAAA	-12	NA	122429325	122424260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_122424419_122426786
ENSMUSG00000040649.16_14	chr6	-	2020	6	FSM	ENSMUSG00000040649.16	ENSMUST00000068242.9	4725	6	216	2489	150	-1330	multi-exon	FALSE	canonical	3	62	junction_5	43.1907397482377	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGGCATGTTTGCATG	9456	False	NA	-128	True	AATAAA	-14	NA	122463248	122432548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122449497_122449723_122463049
ENSMUSG00000040649.16_15	chr6	-	1909	5	ISM	ENSMUSG00000040649.16	ENSMUST00000068242.9	4725	6	13744	2399	-207	-1240	3prime_fragment	FALSE	canonical	3	147	junction_2	19.0180834996589	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTAGTTAAAAGTTTGTG	6163	False	NA	-38	True	GATAAA	-4	NA	122449720	122432458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122449497
ENSMUSG00000040649.16_19	chr6	-	2027	6	NNC	ENSMUSG00000040649.16	novel	4725	6	NA	NA	433	-1330	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	61.6914904990956	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGGCATGTTTGCATG	9739	False	NA	-128	True	AATAAA	-14	NA	122462965	122432548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122449497_122449723_122462759
ENSMUSG00000040650.9_0	chr7	-	2208	11	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24696	-269	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	20.9334660293034	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGGCCACAGTCAGAAAT	NA	False	NA	-16	True	CATAAA	-22	NA	26410558	26364920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26385684_26385816_26389739_26389834_26410317
ENSMUSG00000040650.9_6	chr7	-	2033	10	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24711	-328	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_9	17.7332776384533	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATGTTTGGTGTCTTGT	NA	False	NA	-4	True	NA	NA	NA	26410573	26364979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26389739_26389834_26410317
ENSMUSG00000040651.10_0	chr14	+	7856	23	ISM	ENSMUSG00000040651.10	ENSMUST00000022450.6	7590	24	34	250	34	-250	intron_retention	FALSE	canonical	3	108	junction_17	57.5939763838414	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTGGTTTTAGCACT	8962	False	NA	NA	False	ATTAAA	-16	NA	27150824	27205262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040_27183743_27186002_27186371_27188123_27188269_27189462_27189523_27193574_27194504_27197651_27197775_27198494_27198655_27199068_27199178_27201585_27201765_27201880
ENSMUSG00000040651.10_1	chr14	+	7212	23	NIC	ENSMUSG00000040651.10	novel	7590	24	NA	NA	34	-10	intron_retention	FALSE	canonical	3	82	junction_22	59.3898035047312	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCAAACTGTCTCGGG	8962	False	NA	6	True	AATAAA	-10	NA	27150824	27205502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040_27183743_27186002_27186371_27188123_27188269_27193574_27194504_27197651_27197775_27198494_27198655_27199068_27199178_27201585_27201765_27201880_27202049_27202872
ENSMUSG00000040651.10_2	chr14	+	7275	24	NIC	ENSMUSG00000040651.10	novel	7590	24	NA	NA	34	-7	intron_retention	FALSE	canonical	3	82	junction_23	68.3154033064469	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAACTGTCTCGGGACT	8962	False	NA	9	True	AATAAA	-13	NA	27150824	27205505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040_27183743_27186002_27186371_27188123_27188269_27189462_27189523_27193574_27194504_27197651_27197775_27198494_27198655_27199068_27199178_27201585_27201765_27201880_27202049_27202872
ENSMUSG00000040651.10_3	chr14	+	7489	23	NIC	ENSMUSG00000040651.10	novel	7590	24	NA	NA	34	-7	intron_retention	FALSE	canonical	3	154	junction_16	44.9305478737062	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAACTGTCTCGGGACT	8962	False	NA	9	True	AATAAA	-13	NA	27150824	27205505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040_27183743_27186002_27186371_27188123_27188269_27193574_27194504_27197651_27197775_27198494_27198655_27199068_27199178_27201585_27201765_27201880_27202049_27202598
ENSMUSG00000040651.10_4	chr14	+	7549	24	FSM	ENSMUSG00000040651.10	ENSMUST00000022450.6	7590	24	34	7	34	-7	multi-exon	FALSE	canonical	3	108	junction_17	57.5794347345285	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAACTGTCTCGGGACT	8962	False	NA	9	True	AATAAA	-13	NA	27150824	27205505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040_27183743_27186002_27186371_27188123_27188269_27189462_27189523_27193574_27194504_27197651_27197775_27198494_27198655_27199068_27199178_27201585_27201765_27201880_27202049_27202598
ENSMUSG00000040651.10_60	chr14	+	4249	7	ISM	ENSMUSG00000040651.10	ENSMUST00000022450.6	7590	24	43110	7	-5226	-7	3prime_fragment	FALSE	canonical	3	213	junction_6	46.9411570183589	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAACTGTCTCGGGACT	NA	False	NA	9	True	AATAAA	-13	NA	27193900	27205505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_27194504_27197651_27197775_27198494_27198655_27199068_27199178_27201585_27201765_27201880_27202049_27202598
ENSMUSG00000040651.10_75	chr14	+	2386	1	ISM	ENSMUSG00000040651.10	ENSMUST00000022450.6	7590	24	52331	5	3995	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACTGTCTCGGGACTTT	NA	False	NA	11	True	AATAAA	-15	NA	27203121	27205507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_27203100_27205500
ENSMUSG00000040651.10_8	chr14	+	4568	17	ISM	ENSMUSG00000040651.10	ENSMUST00000022450.6	7590	24	33	14397	33	2942	5prime_fragment	FALSE	canonical	3	136	junction_16	41.1035278291292	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTAAAGAAATTTATTTT	8961	False	NA	NA	False	AATAAA	-21	NA	27150823	27191115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040_27183743_27186002_27186371_27188123_27188269_27189462
ENSMUSG00000040652.17_0	chr9	+	2018	6	Fusion	ENSMUSG00000040652.17_ENSMUSG00000032387.16	novel	1987	8	NA	NA	14	-3	intron_retention	FALSE	canonical	3	13	junction_1	175.270077309277	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTGGTCTGTCTTTTTA	NA	False	NA	20	True	AATAAA	-14	NA	65537854	65597579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr9_+_65538180_65582445_65582516_65593477_65593636_65595079_65595256_65596102_65596189_65596376
ENSMUSG00000040652.17_12	chr9	+	732	1	ISM	ENSMUSG00000040652.17	ENSMUST00000153700.9	1843	6	13018	3	1760	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTGGTCTGTCTTTTTA	9643	False	NA	20	True	AATAAA	-14	NA	65596847	65597579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_65596800_65597600
ENSMUSG00000040652.17_3	chr9	+	1808	5	NIC	ENSMUSG00000040652.17	novel	1843	6	NA	NA	2	-3	intron_retention	FALSE	canonical	3	365	junction_4	22.3983816379666	376	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTGGTCTGTCTTTTTA	4637	False	NA	20	True	AATAAA	-14	NA	65583862	65597579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_65584048_65593477_65593636_65595079_65595256_65596102_65596189_65596376
ENSMUSG00000040653.7_0	chr10	+	2123	4	FSM	ENSMUSG00000040653.7	ENSMUST00000043374.7	2617	4	490	4	3	-4	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCTTGTTTTTGTGTAT	NA	False	NA	NA	False	AATAAA	-12	NA	3316546	3414971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_3316970_3373493_3373578_3375733_3375767_3413388
ENSMUSG00000040658.8_0	chr17	+	1116	4	FSM	ENSMUSG00000040658.8	ENSMUST00000046497.8	1190	4	68	6	68	-6	multi-exon	FALSE	canonical	3	629	junction_2	31.4960314960472	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAGTTGCCTTGGTCAC	NA	False	NA	8	True	NA	NA	NA	46807704	46810544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802
ENSMUSG00000040659.4_0	chr4	-	2181	4	FSM	ENSMUSG00000040659.4	ENSMUST00000036854.4	2381	4	1	199	1	-199	multi-exon	FALSE	canonical	3	474	junction_2	32.1696889771861	679	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCTTATGTGTGTGTGG	3877	False	NA	-9	True	GATAAA	-6	NA	141602230	141585651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141587190_141587858_141587994_141589115_141589264_141601870
ENSMUSG00000040661.7_1	chr9	-	2922	1	ISM	ENSMUSG00000040661.7	ENSMUST00000046502.7	9305	22	98190	1	2301	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGATGTTTGGTCAAGAAA	2791	False	NA	-3	True	AATAAA	-10	NA	106568203	106565281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_106565300_106568200
ENSMUSG00000040661.7_2	chr9	-	6358	22	FSM	ENSMUSG00000040661.7	ENSMUST00000046502.7	9305	22	20	2927	2	-2219	multi-exon	TRUE	canonical	3	17	junction_10	7.57277616039918	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGTGTGTCCTGCGTCCT	7315	False	NA	0	True	CATAAA	-19	NA	106666373	106568207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106570910_106573070_106573164_106575316_106575407_106577693_106577894_106579843_106580041_106580690_106580864_106581263_106581470_106582966_106583067_106585413_106585533_106587532_106587652_106587866_106588119_106589530_106589709_106590442_106590786_106593259_106593457_106594384_106594519_106594947_106595131_106596111_106596339_106596806_106596924_106597523_106597664_106599914_106600114_106631143_106631338_106666178
ENSMUSG00000040663.10_0	chr19	+	1633	3	FSM	ENSMUSG00000040663.10	ENSMUST00000126457.2	646	3	-10	-977	-10	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTTGGACTCTTTGCCT	2121	False	NA	NA	False	AATAAA	-12	NA	4264637	4273544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4264687_4270231_4270399_4272127
ENSMUSG00000040667.12_0	chr11	-	2423	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108531.8	2453	17	16	14	2	-4	multi-exon	FALSE	canonical	3	352	junction_6	132.716744893024	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAAAAATTTGACTTTGC	NA	False	NA	-13	True	AATAAA	-35	NA	70860783	70833911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUSG00000040667.12_1	chr11	-	2410	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	-5	-16	0	-4	multi-exon	FALSE	canonical	3	409	junction_6	121.230008016786	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAAAAATTTGACTTTGC	NA	False	NA	-13	True	AATAAA	-35	NA	70860785	70833911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUSG00000040669.15_0	chr6	-	3422	15	FSM	ENSMUSG00000040669.15	ENSMUST00000161739.8	3893	15	-85	556	-35	9	multi-exon	FALSE	canonical	3	590	junction_10	176.752392241987	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCTAATCCAGTTTTTAAA	8991	False	NA	-2	True	AATAAA	-23	NA	122316702	122295252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
ENSMUSG00000040669.15_2	chr6	-	3296	14	FSM	ENSMUSG00000040669.15	ENSMUST00000161054.8	3612	14	-132	448	-69	5	multi-exon	FALSE	canonical	3	372	junction_9	201.373802377627	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTACCCTAATCCAGTTTT	8957	False	NA	-6	True	AATAAA	-19	NA	122316736	122295256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
ENSMUSG00000040669.15_26	chr6	-	2927	9	ISM	ENSMUSG00000040669.15	ENSMUST00000081849.10	3683	13	11291	30	9421	-11	3prime_fragment	FALSE	canonical	3	888	junction_8	91.6787870774914	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTCAGTAAAAGGATGAAAG	NA	False	NA	-42	True	ATTAAA	-11	NA	122302683	122294719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416
ENSMUSG00000040675.18_0	chr10	+	3541	28	FSM	ENSMUSG00000040675.18	ENSMUST00000043735.8	3535	28	-12	6	1	-6	multi-exon	FALSE	canonical	3	127	junction_27	66.4418431300526	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCGTGTTCAGCTAGTA	NA	False	NA	8	True	AATAAA	-13	NA	3923131	4106105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105649
ENSMUSG00000040675.18_1	chr10	+	3650	28	FSM	ENSMUSG00000040675.18	ENSMUST00000117291.8	3669	28	11	8	-2	-8	multi-exon	FALSE	canonical	3	315	junction_27	39.2310170953031	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCGTGTTCAGCTAG	NA	False	NA	6	True	AATAAA	-11	NA	3923128	4106103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105541
ENSMUSG00000040680.10_0	chr17	-	2312	9	ISM	ENSMUSG00000040680.10	ENSMUST00000046525.10	2123	10	442	4	442	-4	3prime_fragment	FALSE	canonical	1	2	junction_8	4.32290411644765	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGGCTTTAGCAAGTTCT	NA	False	NA	NA	False	AATAAA	-14	NA	23964365	23960174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_23960946_23961170_23961250_23961330_23961457_23961535_23961869_23962193_23962348_23962528_23962654_23962726_23962819_23963516_23963692_23963908
ENSMUSG00000040680.10_1	chr17	-	1352	2	NIC	ENSMUSG00000040680.10	novel	2123	10	NA	NA	3203	-1	intron_retention	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTTAGCAAGTTCTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	23961604	23960171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_23961250_23961330
ENSMUSG00000040680.10_6	chr17	-	2495	8	NIC	ENSMUSG00000040680.10	novel	2123	10	NA	NA	484	-4	intron_retention	TRUE	canonical	1	2	junction_7	4.53107186490106	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGGCTTTAGCAAGTTCT	NA	False	NA	NA	False	AATAAA	-14	NA	23964323	23960174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_23961250_23961330_23961457_23961535_23961869_23962193_23962348_23962528_23962654_23962726_23962819_23963516_23963692_23963908
ENSMUSG00000040681.17_0	chr16	-	1172	6	FSM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	24	978	24	638	multi-exon	FALSE	canonical	3	5886	junction_4	404.27841891449	3066	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGTATTTGGAAATGCC	NA	False	NA	-19	True	AATAAA	-11	NA	95928905	95922795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631_95928662_95928789
ENSMUSG00000040687.17_1	chr2	-	5908	33	NIC	ENSMUSG00000040687.17	novel	5974	36	NA	NA	-36	0	intron_retention	FALSE	canonical	2	6	junction_12	4.88460592064498	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGGCTCCTGTGCACTC	NA	False	NA	-2	True	AATAAA	-14	NA	91013270	90967705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90968747_90969053_90969101_90970901_90970972_90973100_90973208_90973359_90973433_90973866_90974032_90977183_90977292_90982798_90982910_90984779_90984886_90984989_90985111_90985890_90985994_90988329_90988489_90988749_90988834_90989549_90989651_90992372_90992580_90992826_90992978_90993071_90993259_90993843_90993947_90995710_90995813_90996890_90997031_90997258_90997513_90997872_90998064_90998155_90998260_91000045_91000203_91000361_91000598_91000913_91001093_91003457_91003539_91005987_91006102_91006500_91006633_91007150_91007455_91008244_91008842_91009523_91009667_91013140
ENSMUSG00000040687.17_11	chr2	-	5418	31	NIC	ENSMUSG00000040687.17	novel	5905	35	NA	NA	1032	-1	intron_retention	FALSE	canonical	1	1	junction_12	5.1143588715172	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGGGCTCCTGTGCACT	NA	False	NA	-3	True	AATAAA	-13	NA	91008628	90967706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90968747_90969053_90969101_90970901_90970972_90973100_90973208_90973359_90973433_90973866_90974032_90977183_90977292_90982798_90982910_90984779_90984886_90984989_90985111_90985890_90985994_90988329_90988489_90988752_90988834_90989549_90989651_90992372_90992580_90992826_90992978_90993071_90993259_90993843_90993947_90995710_90995813_90996890_90997031_90997258_90997513_90997872_90998064_90998155_90998260_91000045_91000203_91000361_91000598_91000913_91001093_91003457_91003539_91005987_91006102_91006500_91006633_91007150_91007455_91008244
ENSMUSG00000040687.17_2	chr2	-	5926	32	NIC	ENSMUSG00000040687.17	novel	5977	35	NA	NA	1	0	intron_retention	FALSE	canonical	1	2	junction_2	5.18181403276259	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGGCTCCTGTGCACTC	NA	False	NA	-2	True	AATAAA	-14	NA	91013370	90967705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90968747_90969053_90969101_90973100_90973208_90973359_90973433_90973866_90974032_90977183_90977292_90982798_90982910_90984779_90984886_90984989_90985111_90985890_90985994_90988329_90988489_90988761_90988834_90989549_90989651_90992372_90992580_90992826_90992978_90993071_90993259_90993843_90993947_90995710_90995813_90996890_90997031_90997258_90997513_90997872_90998064_90998155_90998260_91000045_91000203_91000361_91000598_91000913_91001093_91003457_91003539_91005987_91006102_91006500_91006633_91007150_91007455_91008244_91008842_91009523_91009667_91013140
ENSMUSG00000040687.17_27	chr2	-	6004	33	NIC	ENSMUSG00000040687.17	novel	5974	36	NA	NA	2	0	intron_retention	FALSE	canonical	1	1	junction_12	5.22604280861724	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGGCTCCTGTGCACTC	NA	False	NA	-2	True	AATAAA	-14	NA	91013369	90967705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90968747_90969053_90969101_90970901_90970972_90973100_90973208_90973359_90973433_90973866_90974032_90977183_90977292_90982798_90982910_90984779_90984886_90984989_90985111_90985890_90985994_90988329_90988489_90988752_90988834_90989549_90989651_90992372_90992580_90992826_90992978_90993071_90993259_90993843_90993947_90995710_90995813_90996890_90997031_90997258_90997513_90997872_90998064_90998155_90998260_91000045_91000203_91000361_91000598_91000913_91001093_91003457_91003539_91005987_91006102_91006500_91006633_91007150_91007455_91008244_91008842_91009523_91009667_91013140
ENSMUSG00000040687.17_29	chr2	-	5881	33	NIC	ENSMUSG00000040687.17	novel	5974	36	NA	NA	-21	0	intron_retention	TRUE	canonical	2	6	junction_22	4.65991885658967	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGGCTCCTGTGCACTC	NA	False	NA	-2	True	AATAAA	-14	NA	91013255	90967705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90968747_90969053_90969101_90970901_90970972_90973100_90973208_90973359_90973433_90973866_90974032_90977183_90977292_90982798_90982910_90984779_90984886_90984989_90985111_90985890_90985994_90988329_90988489_90988761_90988834_90989549_90989651_90992372_90992580_90992826_90992978_90993071_90993259_90993843_90993947_90995710_90995813_90996890_90997031_90997258_90997513_90997872_90998064_90998155_90998260_91000045_91000203_91000361_91000598_91000913_91001093_91003457_91003539_91005987_91006102_91006500_91006633_91007150_91007455_91008244_91008842_91009523_91009667_91013140
ENSMUSG00000040688.17_0	chr17	-	2486	22	FSM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	36	2704	7	-195	multi-exon	FALSE	canonical	3	500	junction_14	40.675587289682	1034	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGTTTCTCATGTGAA	NA	False	NA	-26	True	NA	NA	NA	24926598	24919626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
ENSMUSG00000040693.8_0	chr1	-	4866	13	FSM	ENSMUSG00000040693.8	ENSMUST00000071985.6	4908	13	38	4	38	-4	multi-exon	FALSE	canonical	0	0	junction_9	6.53781733880318	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACACTGTTTTATTACTC	NA	False	NA	NA	False	ATTAAA	-14	NA	96799858	96743998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_96746833_96748907_96749046_96751421_96751487_96756515_96756701_96759710_96759865_96764604_96764801_96765178_96765324_96766891_96767011_96768854_96768977_96770178_96770276_96772200_96772381_96795449_96795714_96799491
ENSMUSG00000040693.8_1	chr1	-	3024	3	ISM	ENSMUSG00000040693.8	ENSMUST00000071985.6	4908	13	48421	6	48421	-6	3prime_fragment	FALSE	canonical	3	12	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTACACTGTTTTATTAC	NA	False	NA	NA	False	ATTAAA	-12	NA	96751475	96744000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_96746833_96748907_96749046_96751421
ENSMUSG00000040693.8_3	chr1	-	2540	1	ISM	ENSMUSG00000040693.8	ENSMUST00000071985.6	4908	13	53358	4	53358	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACACTGTTTTATTACTC	NA	False	NA	NA	False	ATTAAA	-14	NA	96746538	96743998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_96744000_96746500
ENSMUSG00000040693.8_4	chr1	-	4609	12	NIC	ENSMUSG00000040693.8	novel	4908	13	NA	NA	34	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	7.27727130770527	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTTTTATTACTCTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	96799862	96743995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_96746833_96748907_96749046_96751421_96751487_96756515_96756701_96759710_96759865_96764604_96764801_96765178_96765324_96766891_96767011_96768854_96768977_96770178_96770276_96772200_96772381_96799491
ENSMUSG00000040694.5_0	chr17	-	839	2	ISM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	9555	-1	9243	1	3prime_fragment	FALSE	canonical	3	80	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGGCCTGTTCTCTTAA	8341	False	NA	NA	False	AATAAA	-15	NA	48730403	48726257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_48726662_48729968
ENSMUSG00000040694.5_1	chr17	-	1222	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	198	0	-114	0	multi-exon	FALSE	canonical	3	57	junction_2	11.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	48739760	48726258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_48726662_48729968_48730534_48739506
ENSMUSG00000040697.11_0	chr4	-	3930	15	FSM	ENSMUSG00000040697.11	ENSMUST00000038014.11	5969	15	223	1816	223	-1816	multi-exon	TRUE	canonical	3	44	junction_12	6.2974727681274	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGTAAAGAAAACACTG	NA	False	NA	NA	False	NA	NA	NA	141517979	141489315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141491206_141491878_141492050_141493794_141493894_141493972_141494054_141495018_141495096_141495201_141495385_141497163_141497348_141498217_141498349_141501811_141501971_141502676_141502782_141504205_141504391_141510083_141510418_141511998_141512066_141516199_141516385_141517900
ENSMUSG00000040697.11_1	chr4	-	1191	1	ISM	ENSMUSG00000040697.11	ENSMUST00000038014.11	5969	15	27703	1809	11465	-1809	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAACACTGCCAGGCT	NA	False	NA	NA	False	ATTAAA	-5	NA	141490499	141489308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141489300_141490500
ENSMUSG00000040697.11_13	chr4	-	2948	13	ISM	ENSMUSG00000040697.11	ENSMUST00000038014.11	5969	15	204	5235	204	4652	5prime_fragment	FALSE	canonical	3	44	junction_10	6.54896090146283	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	141517998	141492734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141493894_141493972_141494054_141495018_141495096_141495201_141495385_141497163_141497348_141498217_141498349_141501811_141501971_141502676_141502782_141504205_141504391_141510083_141510418_141511998_141512066_141516199_141516385_141517900
ENSMUSG00000040699.14_0	chr11	-	1185	5	FSM	ENSMUSG00000040699.14	ENSMUST00000045923.10	2950	5	-20	1785	-20	273	multi-exon	FALSE	canonical	3	236	junction_1	24.7638849940796	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGACTCTCTTGTGTGGC	NA	False	NA	-14	True	TTTAAA	-15	NA	106050988	106048866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106050876
ENSMUSG00000040699.14_4	chr11	-	1245	5	NIC	ENSMUSG00000040699.14	novel	2950	5	NA	NA	329	273	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	112.144995430024	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGACTCTCTTGTGTGGC	NA	False	NA	-14	True	TTTAAA	-15	NA	106051357	106048866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106051185
ENSMUSG00000040699.14_7	chr11	-	1140	5	NIC	ENSMUSG00000040699.14	novel	2950	5	NA	NA	-10	266	combination_of_known_splicesites	FALSE	canonical	3	9	junction_4	113.415993140297	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGCTCTTGACTCTCTT	NA	False	NA	-21	True	TTTAAA	-8	NA	106050978	106048873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050241_106050876
ENSMUSG00000040701.17_1	chr14	-	2635	22	FSM	ENSMUSG00000040701.17	ENSMUST00000036041.15	2673	22	32	6	0	-1	multi-exon	FALSE	canonical	3	99	junction_4	12.8308372870802	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAAGGTGTTAGCTGTGA	NA	False	NA	-28	True	AATAAA	-10	NA	55344018	55336312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
ENSMUSG00000040701.17_20	chr14	-	2500	21	NIC	ENSMUSG00000040701.17	novel	2673	22	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	1	3	junction_19	30.3714915669284	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAAGGTGTTAGCTGTGA	NA	False	NA	-28	True	AATAAA	-10	NA	55344008	55336312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55343381_55343587_55343964
ENSMUSG00000040701.17_7	chr14	-	2589	21	ISM	ENSMUSG00000040701.17	ENSMUST00000170285.2	2596	22	14	-3	-1	-2	intron_retention	TRUE	canonical	3	99	junction_4	12.6388290596875	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGTTAGCTGTGAAGTG	NA	False	NA	-24	True	AATAAA	-14	NA	55343590	55336308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55342762_55342888_55343381
ENSMUSG00000040703.12_2	chr7	-	2643	9	FSM	ENSMUSG00000040703.12	ENSMUST00000043314.10	2745	9	101	1	6	-1	multi-exon	FALSE	canonical	3	20	junction_7	4.7368238303741	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGGACCCCCTCTGCCTG	1705	False	NA	-7	True	AATAAA	-17	NA	25515977	25501900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25503185_25503340_25503483_25505295_25505484_25507468_25507611_25508603_25508784_25508862_25509024_25511026_25511177_25514309_25514476_25515747
ENSMUSG00000040703.12_5	chr7	-	4468	8	NIC	ENSMUSG00000040703.12	novel	2745	9	NA	NA	-5	0	intron_retention	FALSE	canonical	3	20	junction_6	4.68606270481621	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGACCCCCTCTGCCTGT	1694	False	NA	-6	True	AATAAA	-18	NA	25515988	25501899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_25503185_25503340_25505484_25507468_25507611_25508603_25508784_25508862_25509024_25511026_25511177_25514309_25514476_25515747
ENSMUSG00000040703.12_6	chr7	-	1092	1	ISM	ENSMUSG00000040703.12	ENSMUST00000043314.10	2745	9	13087	0	11826	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGACCCCCTCTGCCTGT	NA	False	NA	-6	True	AATAAA	-18	NA	25502991	25501899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_25501900_25503000
ENSMUSG00000040703.12_7	chr7	-	2599	9	NIC	ENSMUSG00000040703.12	novel	2745	9	NA	NA	-54	5	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	10.7812047100498	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCTCTGCCTGTGTGAG	1550	False	NA	-1	True	AATAAA	-23	NA	25516132	25501894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_25503185_25503340_25503483_25505295_25505484_25507468_25507611_25508603_25508784_25508862_25509024_25511026_25511177_25514309_25514476_25515952
ENSMUSG00000040706.5_0	chr4	+	1329	7	FSM	ENSMUSG00000040706.5	ENSMUST00000038161.5	1407	7	77	1	77	-1	multi-exon	FALSE	canonical	1	3	junction_5	1.49071198499986	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGCCTGTGGAGTTCA	NA	False	NA	NA	False	ATTAAA	-14	NA	141474059	141486573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_141474411_141476885_141477089_141482135_141482185_141483109_141483306_141484696_141484877_141485649_141485735_141486308
ENSMUSG00000040711.9_0	chr11	+	3967	13	FSM	ENSMUSG00000040711.9	ENSMUST00000038753.6	7413	13	0	3446	0	-3446	multi-exon	FALSE	canonical	3	19	junction_11	4.75146176338281	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACCAGCAGCTTGGTCT	271	False	NA	NA	False	AATAAA	-31	NA	32297819	32374727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_32297969_32321517_32321599_32331433_32331510_32337927_32338005_32346441_32346534_32347065_32347092_32353860_32353996_32357561_32357667_32361456_32361575_32364200_32364428_32365922_32365973_32367079_32367206_32372022
ENSMUSG00000040711.9_6	chr11	+	4350	1	ISM	ENSMUSG00000040711.9	ENSMUST00000038753.6	7413	13	75876	128	75856	-128	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGATGTAGTGTTTGTGG	NA	False	NA	15	True	AATAAA	-28	NA	32373695	32378045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_32373700_32378000
ENSMUSG00000040712.17_1	chr11	-	4444	22	FSM	ENSMUSG00000040712.17	ENSMUST00000119120.2	4460	22	12	4	0	-2	multi-exon	FALSE	canonical	3	17	junction_14	5.19680697362221	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTAGCCTCCGGCCTCTC	8389	False	NA	-5	True	ATTAAA	-12	NA	70578769	70560293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70561089_70561171_70561247_70561374_70561563_70561833_70561906_70562275_70562460_70562709_70562907_70564779_70565082_70565437_70565661_70565981_70566061_70566378_70566564_70567225_70567342_70569109_70569245_70570352_70570480_70571650_70572595_70573286_70573422_70573719_70573874_70574104_70574177_70574715_70574852_70574930_70574999_70576888_70576993_70577172_70577268_70578711
ENSMUSG00000040712.17_10	chr11	-	4371	21	FSM	ENSMUSG00000040712.17	ENSMUST00000108545.9	4377	21	1	5	1	-2	multi-exon	FALSE	canonical	2	2	junction_16	7.40877857679658	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTAGCCTCCGGCCTCTC	8390	False	NA	-5	True	ATTAAA	-12	NA	70578768	70560293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70561089_70561171_70561247_70561374_70561563_70561833_70561906_70562275_70562460_70562709_70562907_70564779_70565082_70565437_70565661_70565981_70566061_70566378_70566564_70567225_70567342_70569109_70569245_70570352_70570480_70571650_70572595_70573286_70573422_70573719_70573874_70574715_70574852_70574930_70574999_70576888_70576993_70577172_70577268_70578711
ENSMUSG00000040712.17_13	chr11	-	4985	21	NIC	ENSMUSG00000040712.17	novel	4460	22	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	17	junction_14	5.32353266168247	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTAGCCTCCGGCCTCTCT	8388	False	NA	-4	True	ATTAAA	-13	NA	70578770	70560292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_70561089_70561171_70561247_70561374_70561563_70561833_70561906_70562275_70562460_70562709_70562907_70564779_70565082_70565437_70565661_70565981_70566061_70566378_70566564_70567225_70567342_70569109_70569245_70570352_70570480_70571650_70572595_70573286_70573422_70573719_70573874_70574104_70574852_70574930_70574999_70576888_70576993_70577172_70577268_70578711
ENSMUSG00000040712.17_14	chr11	-	4440	22	NNC	ENSMUSG00000040712.17	novel	4460	22	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_21	7.27777345034577	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTAGCCTCCGGCCTCTCT	8389	False	NA	-4	True	ATTAAA	-13	NA	70578769	70560292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_70561089_70561171_70561247_70561374_70561563_70561833_70561906_70562275_70562460_70562709_70562907_70564779_70565082_70565437_70565661_70565981_70566061_70566378_70566564_70567225_70567342_70569109_70569245_70570352_70570480_70571650_70572595_70573286_70573422_70573719_70573874_70574104_70574177_70574715_70574852_70574930_70574999_70576888_70576993_70577172_70577263_70578711
ENSMUSG00000040712.17_7	chr11	-	592	1	ISM	ENSMUSG00000040712.17	ENSMUST00000145823.8	4406	21	16331	4	13718	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTAGCCTCCGGCCTCTCT	NA	False	NA	-4	True	ATTAAA	-13	NA	70560884	70560292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_70560300_70560900
ENSMUSG00000040713.13_0	chr1	+	2133	4	FSM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	18	12	18	-12	multi-exon	FALSE	canonical	3	459	junction_1	24.0554914035583	293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTAACAAAGTGTGTTG	NA	False	NA	NA	False	ATTAAA	-6	NA	165591332	165602865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_165591708_165597381_165597502_165598200_165598386_165601412
ENSMUSG00000040714.15_1	chr7	-	1811	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108458.10	1823	13	6	6	6	-3	multi-exon	FALSE	canonical	2	9	junction_12	5.99247212944893	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGCTGTGCGATCTGC	2155	False	NA	NA	False	NA	NA	NA	19138023	19128367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19137945
ENSMUSG00000040714.15_2	chr7	-	1305	11	ISM	ENSMUSG00000040714.15	ENSMUST00000047170.10	1901	13	1854	-3	-1442	0	3prime_fragment	TRUE	canonical	3	22	junction_10	3.40734500748016	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCGATCTGCTCAATT	8229	False	NA	NA	False	NA	NA	NA	19131949	19128361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886
ENSMUSG00000040714.15_4	chr7	-	1816	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108459.9	1849	13	30	3	-13	-3	multi-exon	FALSE	canonical	3	11	junction_12	5.52959210872636	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGCTGTGCGATCTGC	6362	False	NA	NA	False	NA	NA	NA	19133816	19128367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19133733
ENSMUSG00000040714.15_7	chr7	-	1834	13	FSM	ENSMUSG00000040714.15	ENSMUST00000047170.10	1901	13	66	1	66	-1	multi-exon	FALSE	canonical	2	2	junction_12	7.70641868113126	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTGTGCGATCTGCTC	6441	False	NA	NA	False	NA	NA	NA	19133737	19128365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19133638
ENSMUSG00000040714.15_8	chr7	-	1715	12	ISM	ENSMUSG00000040714.15	ENSMUST00000047170.10	1901	13	353	-3	353	0	3prime_fragment	FALSE	canonical	3	22	junction_10	3.28532927265321	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCGATCTGCTCAATT	6728	False	NA	NA	False	NA	NA	NA	19133450	19128361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208
ENSMUSG00000040717.7_0	chr14	+	2379	12	ISM	ENSMUSG00000040717.7	ENSMUST00000035336.5	8280	13	44	6708	44	-398	5prime_fragment	FALSE	canonical	2	9	junction_1	4.66036567926411	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAAATGGTTGTTCTGGT	NA	False	NA	NA	False	AATAGA	-40	NA	26760941	26822535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_26761187_26798307_26798366_26804611_26804738_26809355_26809475_26809962_26810084_26813745_26813791_26813885_26814038_26815353_26815420_26816134_26816190_26816732_26816844_26817859_26818045_26821439
ENSMUSG00000040717.7_2	chr14	+	3320	13	FSM	ENSMUSG00000040717.7	ENSMUST00000035336.5	8280	13	82	4878	-56	-101	multi-exon	FALSE	canonical	2	9	junction_1	4.46902922593064	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATGAATCTTGTACAGA	NA	False	NA	NA	False	AGTAAA	-13	NA	26760979	26824365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_26761187_26798307_26798366_26804611_26804738_26809355_26809475_26809962_26810084_26813745_26813791_26813885_26814038_26815353_26815420_26816134_26816190_26816732_26816844_26817859_26818045_26821439_26822383_26823233
ENSMUSG00000040717.7_5	chr14	+	8162	13	NNC	ENSMUSG00000040717.7	novel	8280	13	NA	NA	-44	-3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_10	5.67646212197547	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTGCAGTGGCTCCTT	NA	False	NA	2	True	AATAAA	-12	NA	26760991	26829240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_26761187_26798307_26798366_26804611_26804738_26809355_26809475_26809962_26810084_26813745_26813791_26813885_26814038_26815353_26815420_26816134_26816190_26816732_26816844_26817880_26818045_26821439_26822383_26823233
ENSMUSG00000040717.7_7	chr14	+	3328	1	ISM	ENSMUSG00000040717.7	ENSMUST00000035336.5	8280	13	65015	3	16191	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTGCAGTGGCTCCTT	NA	False	NA	2	True	AATAAA	-12	NA	26825912	26829240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_26825900_26829200
ENSMUSG00000040717.7_9	chr14	+	6657	2	ISM	ENSMUSG00000040717.7	ENSMUST00000225829.2	2134	9	12012	-5793	12012	-2	3prime_fragment	FALSE	canonical	3	17	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTGCAGTGGCTCCTTA	NA	False	NA	3	True	AATAAA	-13	NA	26821733	26829241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_26822383_26823233
ENSMUSG00000040720.16_0	chr4	+	5630	24	FSM	ENSMUSG00000040720.16	ENSMUST00000059914.13	6506	24	72	804	-13	-804	multi-exon	TRUE	canonical	3	55	junction_9	10.2468585254619	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTATGTTTGTATATATTT	6	True	NA	10	True	AATAAA	-15	NA	11486029	11549880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_11486106_11494763_11494880_11498739_11498827_11501308_11501358_11505441_11505611_11506953_11507077_11507906_11508180_11513027_11514169_11518925_11519415_11521104_11521260_11522852_11522936_11526346_11526441_11526594_11527140_11527647_11527884_11528537_11528791_11530827_11531046_11534188_11534322_11539909_11540063_11540480_11540642_11542106_11542204_11544830_11544998_11545968_11546301_11548730_11548875_11549544
ENSMUSG00000040720.16_21	chr4	+	4094	17	ISM	ENSMUSG00000040720.16	ENSMUST00000059914.13	6506	24	27713	804	27628	-804	3prime_fragment	FALSE	canonical	3	55	junction_2	10.7918878677458	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTATGTTTGTATATATTT	NA	False	NA	10	True	AATAAA	-15	NA	11513670	11549880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_11514169_11518925_11519415_11521104_11521260_11522852_11522936_11526346_11526441_11526594_11527140_11527647_11527884_11528537_11528791_11530827_11531046_11534188_11534322_11539909_11540063_11540480_11540642_11542106_11542204_11544830_11544998_11545968_11546301_11548730_11548875_11549544
ENSMUSG00000040720.16_28	chr4	+	2640	12	ISM	ENSMUSG00000040720.16	ENSMUST00000108307.3	6571	25	40687	804	40687	-804	3prime_fragment	FALSE	canonical	3	60	junction_2	8.99586681952944	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTATGTTTGTATATATTT	NA	False	NA	10	True	AATAAA	-15	NA	11526729	11549880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_11527140_11527647_11527884_11528537_11528791_11530827_11531046_11534188_11534322_11539909_11540063_11540480_11540642_11542106_11542204_11544830_11544998_11545968_11546301_11548730_11548875_11549544
ENSMUSG00000040720.16_4	chr4	+	3866	13	FSM	ENSMUSG00000040720.16	ENSMUST00000055372.14	3954	13	74	14	-11	-14	multi-exon	FALSE	canonical	3	55	junction_9	7.54799458281617	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCTATGTACACAC	8	True	NA	NA	False	AATAAA	-1	NA	11486031	11527607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_11486106_11494763_11494880_11498739_11498827_11501308_11501358_11505441_11505611_11506953_11507077_11507906_11508180_11513027_11514169_11518925_11519415_11521104_11521260_11522852_11522936_11526346_11526441_11526594
ENSMUSG00000040721.10_0	chr14	-	1229	1	ISM	ENSMUSG00000040721.10	ENSMUST00000036328.9	10397	10	29435	1399	9345	-1399	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGTGTTCTTTTTGTT	NA	False	NA	-28	True	AATATA	-36	NA	55300346	55299117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55299100_55300300
ENSMUSG00000040721.10_15	chr14	-	4463	9	ISM	ENSMUSG00000040721.10	ENSMUST00000036328.9	10397	10	-18	6185	-18	-240	5prime_fragment	FALSE	canonical	3	30	junction_6	5.85101486923423	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTACCTCCATGACCTCA	NA	False	NA	NA	False	NA	NA	NA	55329799	55303903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55304739_55304941_55305069_55305564_55305766_55307595_55307655_55308017_55308093_55309315_55309557_55310003_55310522_55310669_55312742_55329464
ENSMUSG00000040721.10_18	chr14	-	4269	8	ISM	ENSMUSG00000040721.10	ENSMUST00000036328.9	10397	10	17133	5951	-2957	-6	internal_fragment	FALSE	canonical	3	30	junction_6	5.44358825235933	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATTTTGGCTTTGAGT	NA	False	NA	NA	False	AATGAA	-30	NA	55312648	55303669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55304739_55304941_55305069_55305564_55305766_55307595_55307655_55308017_55308093_55309315_55309557_55310003_55310522_55310669
ENSMUSG00000040721.10_2	chr14	-	3428	2	ISM	ENSMUSG00000040721.10	ENSMUST00000036328.9	10397	10	27000	1402	6910	-1402	3prime_fragment	FALSE	canonical	3	63	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAACAAGTGTTCTTTTT	NA	False	NA	-31	True	CATAAA	-44	NA	55302781	55299120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55301029_55301261
ENSMUSG00000040721.10_3	chr14	-	8977	10	FSM	ENSMUSG00000040721.10	ENSMUST00000036328.9	10397	10	18	1402	18	-1402	multi-exon	FALSE	canonical	3	30	junction_7	9.6966329907873	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAACAAGTGTTCTTTTT	NA	False	NA	-31	True	CATAAA	-44	NA	55329763	55299120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55301029_55301261_55304739_55304941_55305069_55305564_55305766_55307595_55307655_55308017_55308093_55309315_55309557_55310003_55310522_55310669_55312742_55329464
ENSMUSG00000040721.10_6	chr14	-	7509	9	ISM	ENSMUSG00000040721.10	ENSMUST00000036328.9	10397	10	18209	1402	-1881	-1402	3prime_fragment	TRUE	canonical	3	30	junction_7	9.50986330080512	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAACAAGTGTTCTTTTT	NA	False	NA	-31	True	CATAAA	-44	NA	55311572	55299120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55301029_55301261_55304739_55304941_55305069_55305564_55305766_55307595_55307655_55308017_55308093_55309315_55309557_55310003_55310522_55310669
ENSMUSG00000040721.10_8	chr14	-	6400	8	ISM	ENSMUSG00000040721.10	ENSMUST00000036328.9	10397	10	19469	1399	-621	-1399	3prime_fragment	FALSE	canonical	3	30	junction_7	9.53190132434987	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGTGTTCTTTTTGTT	NA	False	NA	-28	True	AATATA	-36	NA	55310312	55299117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55301029_55301261_55304739_55304941_55305069_55305564_55305766_55307595_55307655_55308017_55308093_55309315_55309557_55310003
ENSMUSG00000040722.8_0	chr9	-	3301	7	FSM	ENSMUSG00000040722.8	ENSMUST00000214256.2	1025	7	42	-2318	19	-1	multi-exon	FALSE	canonical	3	62	junction_6	45.7262385167301	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCCCTCTGTGTTACTTG	NA	False	NA	-1	True	AATAAA	-19	NA	57375301	57348610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375098
ENSMUSG00000040722.8_1	chr9	-	2308	1	ISM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	24423	1	3757	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCCCTCTGTGTTACTTG	NA	False	NA	-1	True	AATAAA	-19	NA	57350918	57348610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_57348600_57350900
ENSMUSG00000040722.8_2	chr9	-	3202	7	FSM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	21	2	0	-2	multi-exon	FALSE	canonical	3	67	junction_3	41.0680329859288	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCCCTCTGTGTTACTT	NA	False	NA	-2	True	AATAAA	-18	NA	57375320	57348611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375215
ENSMUSG00000040722.8_4	chr9	-	3039	6	FSM	ENSMUSG00000040722.8	ENSMUST00000215734.2	675	6	7	-2371	7	-1	multi-exon	FALSE	canonical	3	101	junction_3	25.4715527598927	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCCCTCTGTGTTACTTG	NA	False	NA	-1	True	AATAAA	-19	NA	57375313	57348610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57358638_57358768_57359262_57359318_57375215
ENSMUSG00000040722.8_9	chr9	-	3144	6	NIC	ENSMUSG00000040722.8	novel	1025	7	NA	NA	19	-1	combination_of_known_junctions	FALSE	canonical	3	62	junction_5	39.9669863762581	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCCCTCTGTGTTACTTG	NA	False	NA	-1	True	AATAAA	-19	NA	57375301	57348610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57351148_57352654_57352773_57353354_57353457_57358638_57358768_57359262_57359318_57375098
ENSMUSG00000040723.15_0	chr1	-	2528	3	NNC	ENSMUSG00000040723.15	novel	5001	6	NA	NA	51024	2	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	12	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGTTGGTTCTTATTCTGA	NA	False	NA	0	True	AATAAA	-13	NA	165484593	165476513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_165477780_165482873_165483606_165484063
ENSMUSG00000040723.15_1	chr1	-	2986	2	ISM	ENSMUSG00000040723.15	ENSMUST00000040357.11	2622	7	51024	-2	51024	2	3prime_fragment	FALSE	canonical	3	37	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGTTGGTTCTTATTCTGA	NA	False	NA	0	True	AATAAA	-13	NA	165484593	165476513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_165477780_165482873
ENSMUSG00000040723.15_3	chr1	-	2633	7	FSM	ENSMUSG00000040723.15	ENSMUST00000040357.11	2622	7	-11	0	-11	0	multi-exon	FALSE	canonical	0	0	junction_3	13.5851225815432	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGGTTGGTTCTTATTCT	NA	False	NA	-2	True	AATAAA	-11	NA	165535628	165476515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_165477780_165482873_165483606_165485067_165485272_165486941_165487014_165491134_165491225_165492517_165492620_165535459
ENSMUSG00000040725.14_1	chr7	-	3479	15	FSM	ENSMUSG00000040725.14	ENSMUST00000206832.2	3784	15	-13	318	-13	-1	multi-exon	FALSE	canonical	3	866	junction_14	88.3957070247654	1654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCAGGAGTCGTGGTAGT	9529	False	NA	NA	False	NA	NA	NA	25454195	25420907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453765
ENSMUSG00000040725.14_3	chr7	-	3373	15	FSM	ENSMUSG00000040725.14	ENSMUST00000043765.14	3354	15	-15	-4	-8	4	multi-exon	FALSE	canonical	3	189	junction_14	237.54999473795	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGTCGTGGTAGTTTCTG	9534	False	NA	NA	False	NA	NA	NA	25454190	25420902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453871
ENSMUSG00000040725.14_4	chr7	-	3083	15	NNC	ENSMUSG00000040725.14	novel	3784	15	NA	NA	-1435	2	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_14	261.486810452872	155	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGAGTCGTGGTAGTTTC	8649	False	NA	NA	False	NA	NA	NA	25455617	25420904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25455586
ENSMUSG00000040726.11_1	chr14	+	821	4	FSM	ENSMUSG00000040726.11	ENSMUST00000035433.10	1141	4	312	8	312	-4	multi-exon	FALSE	canonical	3	134	junction_1	19.2584757675391	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATGACCGGTATTTTAA	NA	False	NA	NA	False	AATAAA	-10	NA	26722630	26724278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_26722834_26723328_26723529_26723775_26723878_26723962
ENSMUSG00000040726.11_2	chr14	+	1050	5	NNC	ENSMUSG00000040726.11	novel	983	5	NA	NA	312	912	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	65.6620133715073	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTCAGATAGCTTTCA	NA	False	NA	3	True	AATAAA	-16	NA	26722630	26725198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_26722834_26723328_26723529_26723775_26723878_26723962_26724062_26724752
ENSMUSG00000040728.16_1	chr4	-	3698	14	NIC	ENSMUSG00000040728.16	novel	3864	16	NA	NA	6	-4	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	2.77776462850274	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTTCGCACTCTTCTT	7123	False	NA	-2	True	AATAAA	-17	NA	11386777	11331936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_11333474_11353294_11353464_11357459_11357659_11359737_11359957_11360953_11361256_11365003_11365047_11365143_11365277_11365373_11365485_11366907_11366963_11367084_11367184_11379290_11379406_11384348_11384463_11385646_11385776_11386304
ENSMUSG00000040728.16_2	chr4	-	3732	16	FSM	ENSMUSG00000040728.16	ENSMUST00000108311.9	3864	16	233	-101	129	-4	multi-exon	FALSE	canonical	0	0	junction_2	3.40978982734518	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTTCGCACTCTTCTT	7350	False	NA	-2	True	AATAAA	-17	NA	11386550	11331936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_11333474_11338721_11338832_11344111_11344263_11353294_11353464_11357459_11357659_11359737_11359957_11360953_11361256_11365003_11365047_11365143_11365277_11365373_11365485_11366907_11366963_11367084_11367184_11379290_11379406_11384348_11384463_11385646_11385776_11386304
ENSMUSG00000040728.16_6	chr4	-	3827	15	NIC	ENSMUSG00000040728.16	novel	3864	16	NA	NA	-17	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	3.51382110749967	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCAATGTTCGCACTCT	7100	False	NA	-6	True	AATAAA	-13	NA	11386800	11331940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_11333474_11338721_11338832_11353294_11353464_11357459_11357659_11359737_11359957_11360953_11361256_11365003_11365047_11365143_11365277_11365373_11365485_11366907_11366963_11367084_11367184_11379290_11379406_11384348_11384463_11385646_11385776_11386304
ENSMUSG00000040729.9_0	chr9	-	3974	11	FSM	ENSMUSG00000040729.9	ENSMUST00000037397.8	3819	11	-155	0	-155	0	multi-exon	FALSE	canonical	1	3	junction_3	3.74299345444258	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGATCTCTGCTTTTTAT	4	True	NA	NA	False	AATAAA	-20	NA	8134450	8076461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_8076948_8079495_8079561_8087228_8087427_8092244_8092318_8095214_8095328_8099732_8101843_8103318_8103518_8112080_8112193_8120642_8120789_8130196_8130317_8134098
ENSMUSG00000040729.9_4	chr9	-	3197	6	NIC	ENSMUSG00000040729.9	novel	3819	11	NA	NA	-692	-1	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	3.16227766016838	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGATCTCTGCTTTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	8100583	8076462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_8078360_8079495_8079561_8087228_8087427_8092244_8092318_8095214_8095328_8099732
ENSMUSG00000040729.9_6	chr9	-	1452	4	ISM	ENSMUSG00000040729.9	ENSMUST00000238782.2	4955	12	-150	34892	-150	-24267	5prime_fragment	FALSE	canonical	3	11	junction_3	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTTTTATTTCTGGTTC	9	True	NA	NA	False	AATAAA	-5	NA	8134445	8111353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_8112193_8120642_8120789_8130196_8130317_8134098
ENSMUSG00000040729.9_7	chr9	-	5383	11	NIC	ENSMUSG00000040729.9	novel	3819	11	NA	NA	-154	-2	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	3.9496835316263	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGGATCTCTGCTTTTT	5	True	NA	NA	False	AATAAA	-18	NA	8134449	8076463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_8078360_8079495_8079561_8087228_8087427_8092244_8092318_8095214_8095328_8099732_8101843_8103318_8103518_8112080_8112193_8120642_8120789_8130196_8130317_8134098
ENSMUSG00000040731.14_0	chr5	-	2340	6	FSM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	22	5	0	-5	multi-exon	FALSE	canonical	3	1750	junction_2	182.920310517996	2456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACACTTATGCTTGTCTT	2202	False	NA	-9	True	AATAAA	-13	NA	134668179	134648735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUSG00000040731.14_1	chr5	-	2401	7	FSM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	164	161	-1	-5	multi-exon	FALSE	canonical	3	761	junction_3	647.667803224256	1149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACACTTATGCTTGTCTT	2201	False	NA	-9	True	AATAAA	-13	NA	134668180	134648735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUSG00000040731.14_4	chr5	-	1339	1	ISM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	18272	159	18084	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTTATGCTTGTCTTTC	7485	False	NA	-7	True	AATAAA	-15	NA	134650072	134648733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_134648700_134650100
ENSMUSG00000040732.21_0	chr16	-	3262	11	NNC	ENSMUSG00000040732.21	novel	3249	11	NA	NA	-15125	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1.4456832294801	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGAACGGTGGTAGTCT	3454	False	NA	NA	False	AATAAA	-23	NA	95346349	95160035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_95162186_95169510_95169559_95170180_95170238_95170853_95170923_95179970_95180052_95180926_95181131_95190752_95190905_95210593_95210812_95325385_95325474_95331122_95331225_95346256
ENSMUSG00000040732.21_2	chr16	-	3165	11	FSM	ENSMUSG00000040732.21	ENSMUST00000233881.2	3249	11	80	4	80	0	multi-exon	FALSE	canonical	0	0	junction_9	1.62788205960997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACGGTGGTAGTCTCCGT	NA	False	NA	NA	False	AATAAA	-27	NA	95331144	95160031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_95162186_95169510_95169559_95170180_95170238_95170853_95170923_95178159_95178232_95179970_95180052_95180926_95181131_95190752_95190905_95210593_95210812_95325385_95325474_95331122
ENSMUSG00000040732.21_4	chr16	-	766	1	ISM	ENSMUSG00000040732.21	ENSMUST00000233881.2	3249	11	170423	8	99303	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGAACGGTGGTAGTCT	NA	False	NA	NA	False	AATAAA	-23	NA	95160801	95160035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_95160000_95160800
ENSMUSG00000040734.15_0	chr7	+	3349	14	NNC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	18.0986775809039	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGAACATCATTTTGA	698	False	NA	NA	False	AATAAA	-13	NA	19093674	19112456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_19093724_19094951_19095242_19102483_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
ENSMUSG00000040734.15_11	chr7	+	3146	13	FSM	ENSMUSG00000040734.15	ENSMUST00000047621.14	3130	13	-18	2	-18	-2	multi-exon	FALSE	canonical	3	31	junction_4	11.000946928939	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGAACATCATTTTGA	396	False	NA	NA	False	AATAAA	-13	NA	19095122	19112456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_19095242_19102466_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
ENSMUSG00000040734.15_2	chr7	+	3369	14	NIC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	12.7483610734546	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACATCATTTTGATT	697	False	NA	NA	False	AATAAA	-15	NA	19093673	19112458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_19093724_19094951_19095242_19102466_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
ENSMUSG00000040734.15_20	chr7	+	3078	13	NNC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	33	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.6656839349313	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGAACATCATTTTGA	447	False	NA	NA	False	AATAAA	-13	NA	19095173	19112456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_19095242_19102483_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
ENSMUSG00000040734.15_23	chr7	+	2402	10	ISM	ENSMUSG00000040734.15	ENSMUST00000047621.14	3130	13	8981	0	1699	0	3prime_fragment	FALSE	canonical	3	31	junction_1	11.7326178233016	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACATCATTTTGATT	9395	False	NA	NA	False	AATAAA	-15	NA	19104121	19112458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
ENSMUSG00000040734.15_29	chr7	+	3123	13	NIC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	15.7126983325236	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGAACATCATTTTGA	415	False	NA	NA	False	AATAAA	-13	NA	19095141	19112456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_19095242_19102470_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
ENSMUSG00000040734.15_3	chr7	+	3345	14	NNC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	18.0986775809039	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGAACATCATTTTGA	698	False	NA	NA	False	AATAAA	-13	NA	19093674	19112456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_19093724_19094951_19095242_19102487_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
ENSMUSG00000040738.11_4	chr4	-	3187	27	FSM	ENSMUSG00000040738.11	ENSMUST00000108319.9	3220	27	29	4	29	-3	multi-exon	TRUE	canonical	3	373	junction_22	31.9212464720813	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATATGTACAATTTAG	-9	True	NA	-18	True	ATTAAA	-16	NA	11254229	11204386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
ENSMUSG00000040738.11_9	chr4	-	3054	26	ISM	ENSMUSG00000040738.11	ENSMUST00000108319.9	3220	27	29	4379	29	-7	5prime_fragment	FALSE	canonical	3	373	junction_21	32.4407151585781	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATTGTGCAAAGATCTTG	-9	True	NA	NA	False	ATTAAA	-15	NA	11254229	11208761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
ENSMUSG00000040746.16_1	chr11	+	1816	9	FSM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	1	16	1	-5	multi-exon	FALSE	canonical	3	485	junction_5	18.8244355825082	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGATGAAAAAAAAAGGTT	9191	False	NA	14	True	AATAAA	-15	NA	70538113	70542231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000040746.16_4	chr11	+	1891	8	ISM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	7	12	7	-1	intron_retention	FALSE	canonical	3	485	junction_5	20.0173394223863	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAAAAAAAAAGGTTAAGA	9197	False	NA	18	True	AATAAA	-19	NA	70538119	70542235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589
ENSMUSG00000040746.16_6	chr11	+	1725	10	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	154.113954952532	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTGGATGAAAAAAAAAGGT	9190	False	NA	13	True	AATAAA	-14	NA	70538112	70542230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_70538140_70538230_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000040749.12_11	chrX	-	1108	1	Genic_Genomic	ENSMUSG00000040749.12	novel	NA	NA	NA	NA	4310	1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGTTTTTCTCACTTT	NA	False	NA	-17	True	AATAAA	-16	NA	162854807	162853699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_162853700_162854800
ENSMUSG00000040749.12_5	chrX	-	1700	4	FSM	ENSMUSG00000040749.12	ENSMUST00000071667.9	1712	4	13	-1	13	1	multi-exon	FALSE	canonical	3	301	junction_3	112.11402925395	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGTTTTTCTCACTTT	NA	False	NA	-17	True	AATAAA	-16	NA	162859133	162853699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859110
ENSMUSG00000040749.12_6	chrX	-	1783	4	FSM	ENSMUSG00000040749.12	ENSMUST00000037928.9	1783	4	1	-1	1	1	multi-exon	FALSE	canonical	3	101	junction_3	206.108385726216	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGTTTTTCTCACTTT	NA	False	NA	-17	True	AATAAA	-16	NA	162859116	162853699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859010
ENSMUSG00000040749.12_7	chrX	-	1983	4	FSM	ENSMUSG00000040749.12	ENSMUST00000134272.2	803	4	1	-1181	1	1	multi-exon	FALSE	canonical	3	72	junction_3	219.75794765049	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGTTTTTCTCACTTT	NA	False	NA	-17	True	AATAAA	-16	NA	162859488	162853699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859182
ENSMUSG00000040749.12_8	chrX	-	1678	3	ISM	ENSMUSG00000040749.12	ENSMUST00000037928.9	1783	4	451	-1	451	1	3prime_fragment	FALSE	canonical	3	523	junction_1	14.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGTTTTTCTCACTTT	NA	False	NA	-17	True	AATAAA	-16	NA	162858666	162853699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_162855224_162856285_162856347_162858573
ENSMUSG00000040752.17_0	chr14	-	3646	21	ISM	ENSMUSG00000040752.17	ENSMUST00000226297.2	6008	39	9662	-1	964	1	3prime_fragment	FALSE	canonical	0	0	junction_4	1.06183802907976	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCACCCTGTCCTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	55194400	55179381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55179459_55179809_55179945_55180604_55180701_55181734_55182011_55182117_55182244_55183769_55183974_55184370_55184680_55185537_55185663_55185748_55185915_55186068_55186253_55186794_55186992_55187301_55187421_55187508_55187636_55187720_55188111_55189702_55189794_55190030_55190177_55190410_55190588_55190745_55190989_55191154_55191411_55193958_55194096_55194335
ENSMUSG00000040760.12_0	chr14	-	3082	22	FSM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	705	3855	-22	-3855	multi-exon	FALSE	canonical	3	262	junction_6	31.5683759207952	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACAATCTTTTGAATT	NA	False	NA	NA	False	AATAAA	-18	NA	26692484	26644799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
ENSMUSG00000040760.12_16	chr14	-	3022	21	NIC	ENSMUSG00000040760.12	novel	7642	22	NA	NA	-34	-3855	combination_of_known_junctions	FALSE	canonical	3	51	junction_18	68.3302824522188	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACAATCTTTTGAATT	NA	False	NA	NA	False	AATAAA	-18	NA	26692496	26644799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26685603_26685664_26686815_26686915_26692357
ENSMUSG00000040760.12_2	chr14	-	3392	1	ISM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	48849	4	36128	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTATTTTTGTATGAAAT	NA	False	NA	-16	True	AATAAA	-16	NA	26644340	26640948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_26640900_26644300
ENSMUSG00000040760.12_3	chr14	-	4345	22	NNC	ENSMUSG00000040760.12	novel	7642	22	NA	NA	-34	-2608	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	76.6156884640532	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACATCAGCTGTAGTCAGC	NA	False	NA	NA	False	ATTAAA	-15	NA	26692496	26643552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671394_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
ENSMUSG00000040760.12_46	chr14	-	3134	16	ISM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	707	19673	-20	12465	5prime_fragment	FALSE	canonical	3	283	junction_1	27.6115917686757	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGTACTTAAAAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	26692482	26660617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
ENSMUSG00000040761.17_1	chr4	-	3610	5	ISM	ENSMUSG00000040761.17	ENSMUST00000078886.10	12082	15	65458	15	-1498	-15	3prime_fragment	FALSE	canonical	3	63	junction_4	11.6833214455479	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATACAAAACACCTCA	7553	False	NA	-42	True	NA	NA	NA	141200302	141195215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141196349_141196693_141196853_141197126_141197322_141197420_141197922_141198680
ENSMUSG00000040761.17_10	chr4	-	1000	1	ISM	ENSMUSG00000040761.17	ENSMUST00000078886.10	12082	15	69545	15	2589	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATACAAAACACCTCA	NA	False	NA	-42	True	NA	NA	NA	141196215	141195215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141195200_141196200
ENSMUSG00000040761.17_2	chr4	-	1798	4	ISM	ENSMUSG00000040761.17	ENSMUST00000078886.10	12082	15	68029	15	1073	-15	3prime_fragment	FALSE	canonical	3	66	junction_3	11.323525167642	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATACAAAACACCTCA	NA	False	NA	-42	True	NA	NA	NA	141197731	141195215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141196349_141196693_141196853_141197126_141197322_141197420
ENSMUSG00000040761.17_20	chr4	-	11969	15	FSM	ENSMUSG00000040761.17	ENSMUST00000078886.10	12082	15	-130	243	18	-243	multi-exon	FALSE	canonical	3	15	junction_6	23.4699112630167	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAAGACTTTGTACCGTC	NA	False	NA	NA	False	AAGAAA	-14	NA	141265890	141195443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141196349_141196693_141196853_141197126_141197322_141197420_141197922_141198680_141206701_141211035_141211137_141212869_141212984_141214876_141214991_141215303_141215430_141217156_141217309_141220706_141220908_141221548_141221710_141244146_141244630_141249382_141249704_141265474
ENSMUSG00000040761.17_3	chr4	-	1388	3	ISM	ENSMUSG00000040761.17	ENSMUST00000078886.10	12082	15	68538	15	1582	-15	3prime_fragment	FALSE	canonical	3	74	junction_1	9.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATACAAAACACCTCA	NA	False	NA	-42	True	NA	NA	NA	141197222	141195215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141196349_141196693_141196853_141197126
ENSMUSG00000040767.11_1	chr11	+	793	5	FSM	ENSMUSG00000040767.11	ENSMUST00000039601.10	821	5	28	0	-3	0	multi-exon	FALSE	canonical	3	400	junction_3	16.768646337734	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCAGAAAGCCATAGT	NA	False	NA	21	True	AATAAA	-22	NA	32155442	32158984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_32155664_32156959_32157051_32157556_32157663_32158333_32158409_32158684
ENSMUSG00000040767.11_7	chr11	+	1730	3	ISM	ENSMUSG00000040767.11	ENSMUST00000039601.10	821	5	38	0	-5	0	intron_retention	FALSE	canonical	3	416	junction_1	12.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCAGAAAGCCATAGT	NA	False	NA	21	True	AATAAA	-22	NA	32155452	32158984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_32155664_32156959_32157051_32157556
ENSMUSG00000040771.15_0	chr17	+	1018	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	419.268219639886	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717072	48724282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_48717123_48717852_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_2	chr17	+	1156	6	FSM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	-33	12	33	0	multi-exon	FALSE	canonical	0	0	junction_5	381.26547181721	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717074	48724282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_3	chr17	+	1154	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	170	0	92	0	multi-exon	FALSE	canonical	0	0	junction_5	371.627232586634	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717211	48724282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_4	chr17	+	1159	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	404.287818268124	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717074	48724282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_48717266_48717852_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_5	chr17	+	1186	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	63	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	403.460233480327	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717182	48724282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_48717401_48717852_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_7	chr17	+	2507	5	ISM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	-34	12	32	0	intron_retention	FALSE	canonical	3	263	junction_1	273.554382161939	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717073	48724282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248
ENSMUSG00000040774.16_0	chr3	-	2023	9	FSM	ENSMUSG00000040774.16	ENSMUST00000068301.11	2814	9	64	727	5	-4	multi-exon	FALSE	canonical	3	190	junction_8	25.7924407530579	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCAGCTTTTTTCTCAA	NA	False	NA	-9	True	AATAAA	-12	NA	106455054	106410302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446920_106454995
ENSMUSG00000040774.16_1	chr3	-	1883	8	ISM	ENSMUSG00000040774.16	ENSMUST00000121231.8	2121	9	8062	2	8062	-2	3prime_fragment	FALSE	canonical	3	195	junction_5	22.3396782539453	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAGCTTTTTTCTCAATT	NA	False	NA	-7	True	AATAAA	-14	NA	106446836	106410300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505
ENSMUSG00000040774.16_6	chr3	-	3777	5	ISM	ENSMUSG00000040774.16	ENSMUST00000121231.8	2121	9	32178	4	32178	-4	3prime_fragment	FALSE	canonical	3	218	junction_4	17.2536228079786	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCAGCTTTTTTCTCAA	NA	False	NA	-9	True	AATAAA	-12	NA	106422720	106410302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118
ENSMUSG00000040782.13_4	chr1	+	2716	20	FSM	ENSMUSG00000040782.13	ENSMUST00000076894.11	5116	20	-122	2522	-116	18	multi-exon	FALSE	canonical	3	188	junction_4	50.8633495988022	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAGCCACAGCTGAGCTA	NA	False	NA	NA	False	AATAAA	-29	NA	159059773	159172688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_159060421_159067131_159067192_159072158_159072257_159076771_159076849_159077592_159077713_159080117_159080187_159094326_159094387_159095678_159095756_159105658_159105717_159112117_159112233_159116474_159116611_159134142_159134287_159135979_159136089_159136452_159136535_159147293_159147411_159152486_159152605_159154646_159154772_159156171_159156333_159170376_159170422_159172390
ENSMUSG00000040782.13_7	chr1	+	2681	20	NIC	ENSMUSG00000040782.13	novel	5116	20	NA	NA	-116	-5	combination_of_known_junctions	TRUE	canonical	3	166	junction_4	54.1975457121338	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAACAACAACAACAAAAAG	NA	False	NA	NA	False	AATAAA	-6	NA	159059773	159172665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_159060421_159067131_159067192_159072158_159072257_159076771_159076837_159077592_159077713_159080117_159080187_159094326_159094387_159095678_159095756_159105658_159105717_159112117_159112233_159116474_159116611_159134142_159134287_159135979_159136089_159136452_159136535_159147293_159147411_159152486_159152605_159154646_159154772_159156171_159156333_159170376_159170422_159172390
ENSMUSG00000040785.20_10	chr16	+	7251	46	FSM	ENSMUSG00000040785.20	ENSMUST00000117648.9	7415	46	160	4	-2	-4	multi-exon	FALSE	canonical	0	0	junction_37	31.7357141963995	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCAGCCGTTCACTGTCG	NA	False	NA	NA	False	AATAAA	-13	NA	94171636	94270075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_94171721_94184770_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
ENSMUSG00000040785.20_17	chr16	+	6237	36	NIC	ENSMUSG00000040785.20	novel	7415	46	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_27	31.5407866815302	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCCGTTCACTGTCGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	94171634	94270078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_94171721_94204172_94204228_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
ENSMUSG00000040785.20_27	chr16	+	6404	37	NIC	ENSMUSG00000040785.20	novel	7415	46	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_28	29.9596436379604	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCCGTTCACTGTCGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	94171630	94270078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_94171721_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
ENSMUSG00000040785.20_66	chr16	+	3070	14	ISM	ENSMUSG00000040785.20	ENSMUST00000231915.2	5833	41	59354	-978	-40	-3	3prime_fragment	FALSE	canonical	0	0	junction_5	36.5314163248323	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAGCCGTTCACTGTCGT	NA	False	NA	NA	False	AATAAA	-14	NA	94244084	94270076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
ENSMUSG00000040785.20_7	chr16	+	6012	33	NIC	ENSMUSG00000040785.20	novel	7415	46	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_24	32.491690644494	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCCGTTCACTGTCGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	94171625	94270078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_94171721_94204172_94204228_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
ENSMUSG00000040785.20_76	chr16	+	2385	9	ISM	ENSMUSG00000040785.20	ENSMUST00000231915.2	5833	41	70552	-981	-2973	0	3prime_fragment	FALSE	canonical	3	114	junction_3	15.2807067899361	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCGTTCACTGTCGTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	94255282	94270079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
ENSMUSG00000040785.20_8	chr16	+	7367	46	NIC	ENSMUSG00000040785.20	novel	7415	46	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_37	32.7846998340671	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGTCAGCCGTTCACTG	NA	False	NA	NA	False	AATAAA	-10	NA	94171627	94270072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_94171831_94184770_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
ENSMUSG00000040794.6_0	chr2	+	591	1	ISM	ENSMUSG00000040794.6	ENSMUST00000111466.3	1290	2	4068	7	4068	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTCATGACTGTGAT	NA	False	NA	25	True	AATAAA	-31	NA	90720271	90720862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_90720300_90720900
ENSMUSG00000040795.13_0	chr4	-	2582	6	NNC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	-4	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	51.0505631702531	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTATAAACATATATGTAC	NA	False	NA	NA	False	NA	NA	NA	129512877	129508929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_129510010_129510040_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ENSMUSG00000040795.13_13	chr4	-	478	3	FSM	ENSMUSG00000040795.13	ENSMUST00000121442.2	491	3	11	2	-5	-2	multi-exon	FALSE	canonical	3	28	junction_1	58	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTGGACTTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	129512878	129511893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129512156_129512284_129512429_129512806
ENSMUSG00000040795.13_4	chr4	-	1251	6	NIC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	-4	133	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	35.7960891718635	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAACATTTCACGCCTT	NA	False	NA	-27	True	NA	NA	NA	129512877	129509418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_129509881_129510753_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ENSMUSG00000040795.13_9	chr4	-	2122	5	FSM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	15	502	-4	131	multi-exon	FALSE	canonical	3	109	junction_1	14.396180048888	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATAAAACATTTCACGCC	NA	False	NA	-29	True	NA	NA	NA	129512877	129509420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ENSMUSG00000040811.16_11	chr7	+	2268	19	NIC	ENSMUSG00000040811.16	novel	2255	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	33.4490583749803	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTGGAGTCTGGTCT	NA	False	NA	22	True	AATACA	-14	NA	18915140	18940404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_18915211_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ENSMUSG00000040811.16_12	chr7	+	2244	19	NIC	ENSMUSG00000040811.16	novel	596	6	NA	NA	-24	-1	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	28.4707452191426	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATGTCTGGAGTCTGGT	NA	False	NA	20	True	AATACA	-12	NA	18915232	18940402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_18915281_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ENSMUSG00000040811.16_15	chr7	+	2391	19	Fusion	ENSMUSG00000065543.3_ENSMUSG00000040811.16	novel	593	5	NA	NA	20	-3	multi-exon	FALSE	canonical	3	11	junction_1	34.4726139291918	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGATGTCTGGAGTCTG	NA	False	NA	18	True	AATACA	-10	NA	18915276	18940400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_+_18915474_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ENSMUSG00000040811.16_17	chr7	+	2199	18	ISM	ENSMUSG00000040811.16	ENSMUST00000120595.8	2255	19	538	3	102	0	3prime_fragment	FALSE	canonical	3	114	junction_7	15.6768844443771	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTGGAGTCTGGTCT	NA	False	NA	22	True	AATACA	-14	NA	18915632	18940404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ENSMUSG00000040811.16_4	chr7	+	2530	21	ISM	ENSMUSG00000040811.16	ENSMUST00000117338.8	2765	22	2920	-220	-1829	-1	3prime_fragment	FALSE	canonical	3	14	junction_1	46.9870992933167	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATGTCTGGAGTCTGGT	NA	False	NA	20	True	AATACA	-12	NA	18913265	18940402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_18913371_18913450_18913575_18913675_18913781_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ENSMUSG00000040811.16_7	chr7	+	2239	19	FSM	ENSMUSG00000040811.16	ENSMUST00000120595.8	2255	19	11	5	0	-1	multi-exon	FALSE	canonical	3	61	junction_1	24.7224719088515	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATGTCTGGAGTCTGGT	NA	False	NA	20	True	AATACA	-12	NA	18915105	18940402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18915149_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ENSMUSG00000040813.17_0	chr9	-	1970	6	FSM	ENSMUSG00000040813.17	ENSMUST00000163441.8	1896	6	-81	7	-1	-1	multi-exon	TRUE	canonical	3	46	junction_5	161.744242555956	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGATTTGAGTTGGTTT	7891	False	NA	-7	True	AATAAA	-21	NA	106563103	106535951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562442
ENSMUSG00000040813.17_1	chr9	-	1579	6	FSM	ENSMUSG00000040813.17	ENSMUST00000169068.8	1364	6	-222	7	-1	-1	multi-exon	FALSE	canonical	3	151	junction_5	120.179865202121	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGATTTGAGTTGGTTT	7891	False	NA	-7	True	AATAAA	-21	NA	106563103	106535951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562833
ENSMUSG00000040813.17_2	chr9	-	1399	6	FSM	ENSMUSG00000040813.17	ENSMUST00000046735.11	1391	6	-9	1	3	-1	multi-exon	FALSE	canonical	3	285	junction_5	67.9187750183997	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGATTTGAGTTGGTTT	7871	False	NA	-7	True	AATAAA	-21	NA	106563123	106535951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106563033
ENSMUSG00000040818.11_0	chr14	+	4040	20	FSM	ENSMUSG00000040818.11	ENSMUST00000037585.9	6638	20	1	2597	1	1142	multi-exon	TRUE	canonical	3	24	junction_11	139.009495679959	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACTTAGGTAGCTTGT	NA	False	NA	14	True	ATTAAA	-14	NA	26300733	26352880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_26301018_26313387_26313427_26313549_26313593_26320770_26320884_26321598_26321680_26324202_26324309_26325828_26325909_26327030_26327094_26328059_26328116_26329244_26329368_26329690_26329787_26333121_26333217_26337745_26337812_26338048_26338114_26340469_26340560_26347860_26347915_26348019_26348130_26348473_26348577_26349826_26349902_26350582
ENSMUSG00000040818.11_10	chr14	+	418	1	ISM	ENSMUSG00000040818.11	ENSMUST00000037585.9	6638	20	54320	7	29227	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATATGTTTTGATATTA	NA	False	NA	NA	False	ATTAAA	-6	NA	26355052	26355470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_26355100_26355500
ENSMUSG00000040818.11_7	chr14	+	3041	10	ISM	ENSMUSG00000040818.11	ENSMUST00000037585.9	6638	20	28969	2597	3876	1142	3prime_fragment	FALSE	canonical	3	24	junction_1	6.32065006814573	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACTTAGGTAGCTTGT	NA	False	NA	14	True	ATTAAA	-14	NA	26329701	26352880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_26329787_26333121_26333217_26337745_26337812_26338048_26338114_26340469_26340560_26347860_26347915_26348019_26348130_26348473_26348577_26349826_26349902_26350582
ENSMUSG00000040818.11_8	chr14	+	2473	3	ISM	ENSMUSG00000040818.11	ENSMUST00000037585.9	6638	20	47743	2598	22650	1141	3prime_fragment	FALSE	canonical	3	31	junction_1	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAACTTAGGTAGCTTG	NA	False	NA	13	True	ATTAAA	-13	NA	26348475	26352879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_26348577_26349826_26349902_26350582
ENSMUSG00000040818.11_9	chr14	+	1642	1	ISM	ENSMUSG00000040818.11	ENSMUST00000037585.9	6638	20	50506	2597	25413	1142	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACTTAGGTAGCTTGT	NA	False	NA	14	True	ATTAAA	-14	NA	26351238	26352880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_26351200_26352900
ENSMUSG00000040820.17_1	chr16	-	5224	11	FSM	ENSMUSG00000040820.17	ENSMUST00000227141.2	4021	11	8	-1211	8	105	multi-exon	FALSE	canonical	3	36	junction_1	5.0438080851674	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGCTGCAGTCCATTC	NA	False	NA	NA	False	AATAAA	-13	NA	94091137	93930059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_93932825_93933859_93934074_93935507_93935623_93939667_93939829_93942207_93942276_94031922_94032195_94063450_94063634_94068234_94069167_94069394_94069558_94088650_94088786_94090921
ENSMUSG00000040820.17_10	chr16	-	2135	6	FSM	ENSMUSG00000040820.17	ENSMUST00000226776.2	3388	6	-8	1261	8	-1261	multi-exon	FALSE	canonical	3	38	junction_5	3.26190128606002	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGCAGCTTTTGTGGCTG	NA	False	NA	NA	False	ATTAAA	-30	NA	94091137	94031688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_94032195_94063450_94063634_94068234_94069167_94069394_94069558_94088650_94088786_94090921
ENSMUSG00000040820.17_13	chr16	-	3878	4	ISM	ENSMUSG00000040820.17	ENSMUST00000226776.2	3388	6	-21	35388	-5	-35388	5prime_fragment	FALSE	canonical	3	38	junction_3	0.816496580927726	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCCTCTGCTCAATTTC	NA	False	NA	NA	False	AATAAA	-19	NA	94091150	94065815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_94069167_94069394_94069558_94088650_94088786_94090921
ENSMUSG00000040820.17_16	chr16	-	2332	1	ISM	ENSMUSG00000040820.17	ENSMUST00000228910.2	4150	7	114558	314	43473	110	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGCAGTCCATTCTTGCT	NA	False	NA	NA	False	AATAAA	-18	NA	93932386	93930054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_93930100_93932400
ENSMUSG00000040822.8_1	chr14	+	1038	2	FSM	ENSMUSG00000040822.8	ENSMUST00000038539.8	1843	2	796	9	-32	-9	multi-exon	FALSE	canonical	3	385	junction_1	0	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAGAAATAATTACTGGT	NA	False	NA	NA	False	AATAAA	-17	NA	54924468	54928189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_54924578_54927260
ENSMUSG00000040822.8_2	chr14	+	1460	3	FSM	ENSMUSG00000040822.8	ENSMUST00000228027.2	811	3	-32	-617	-11	-11	multi-exon	FALSE	canonical	3	26	junction_1	179.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGAAAGAAATAATTACTG	NA	False	NA	NA	False	AATAAA	-15	NA	54923661	54928187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_54924111_54924493_54924578_54927260
ENSMUSG00000040824.4_0	chr7	+	495	3	FSM	ENSMUSG00000040824.4	ENSMUST00000049294.4	1420	3	109	816	-28	-816	multi-exon	FALSE	canonical	3	3249	junction_1	86	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTTTTCCAGTGGTCT	NA	False	NA	1	True	AATAAA	-19	NA	18883755	18886651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18883820_18885142_18885323_18886400
ENSMUSG00000040824.4_1	chr7	+	425	2	ISM	ENSMUSG00000040824.4	ENSMUST00000049294.4	1420	3	1502	816	1365	-816	3prime_fragment	FALSE	canonical	3	3421	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTTTTCCAGTGGTCT	454	False	NA	1	True	AATAAA	-19	NA	18885148	18886651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_18885323_18886400
ENSMUSG00000040836.16_0	chr1	+	4370	6	NNC	ENSMUSG00000040836.16	novel	1827	6	NA	NA	-13950	1904	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	1.2	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGAAGCCTACTCATCTG	NA	False	NA	NA	False	TTTAAA	-3	NA	165109407	165151270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_165110147_165133746_165134162_165137837_165138563_165144808_165144914_165146317_165146438_165149004
ENSMUSG00000040836.16_1	chr1	+	4416	1	Genic_Genomic	ENSMUSG00000040836.16	novel	NA	NA	NA	NA	22777	3070	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	165152968	165157384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_+_165153000_165157400
ENSMUSG00000040841.6_0	chr7	+	2776	3	FSM	ENSMUSG00000040841.6	ENSMUST00000049454.6	3007	3	18	213	18	-213	multi-exon	FALSE	canonical	2	8	junction_2	0.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGACAACAGAGCTATT	NA	False	NA	-3	True	ATTAAA	-8	NA	18828536	18832261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18829344_18830156_18830945_18831080
ENSMUSG00000040841.6_2	chr7	+	1637	2	ISM	ENSMUSG00000040841.6	ENSMUST00000049454.6	3007	3	1970	213	1970	-213	3prime_fragment	FALSE	canonical	2	8	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGACAACAGAGCTATT	NA	False	NA	-3	True	ATTAAA	-8	NA	18830488	18832261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_18830945_18831080
ENSMUSG00000040842.18_0	chr4	-	1323	1	ISM	ENSMUSG00000040842.18	ENSMUST00000148204.8	3202	4	25389	15	25389	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATTTGTCCTCATTTCT	4128	False	NA	-15	True	TATAAA	-32	NA	140841649	140840326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_140840300_140841600
ENSMUSG00000040842.18_1	chr4	-	929	4	FSM	ENSMUSG00000040842.18	ENSMUST00000102487.4	3244	4	2	2313	2	1253	multi-exon	FALSE	canonical	3	169	junction_2	126.792043213374	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTCTTTTTTTTTTTT	NA	False	NA	-20	True	NA	NA	NA	140867075	140842624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_140843176_140845837_140846093_140847634_140847685_140867002
ENSMUSG00000040842.18_3	chr4	-	866	3	FSM	ENSMUSG00000040842.18	ENSMUST00000039939.7	3200	3	16	2318	7	1248	multi-exon	FALSE	canonical	3	50	junction_2	204	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATAGCCTTTCTTTTTTT	NA	False	NA	-25	True	NA	NA	NA	140867070	140842629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_140843176_140845837_140846090_140867002
ENSMUSG00000040842.18_6	chr4	-	873	3	FSM	ENSMUSG00000040842.18	ENSMUST00000094549.11	3203	3	12	2318	3	1248	multi-exon	FALSE	canonical	3	212	junction_2	123	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATAGCCTTTCTTTTTTT	NA	False	NA	-25	True	NA	NA	NA	140867074	140842629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_140843176_140845837_140846093_140867002
ENSMUSG00000040842.18_8	chr4	-	917	4	FSM	ENSMUSG00000040842.18	ENSMUST00000148204.8	3202	4	-33	2318	6	1248	multi-exon	FALSE	canonical	3	37	junction_2	172.554017307303	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATAGCCTTTCTTTTTTT	NA	False	NA	-25	True	NA	NA	NA	140867071	140842629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_140843176_140845837_140846090_140847634_140847685_140867002
ENSMUSG00000040843.11_1	chr1	-	1727	7	FSM	ENSMUSG00000040843.11	ENSMUST00000043235.8	4380	7	12	2641	1	655	multi-exon	FALSE	canonical	3	508	junction_2	54.8414381041684	516	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTCATAGTTTGCTGT	NA	False	NA	-10	True	AATAAA	-13	NA	165064500	165042495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165056017_165064298
ENSMUSG00000040848.12_0	chr1	-	5337	7	FSM	ENSMUSG00000040848.12	ENSMUST00000192185.6	3798	7	-12	-1527	-12	-7	multi-exon	FALSE	canonical	1	2	junction_5	27.3780122645081	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAAATGTAGTGTTGTCT	NA	False	NA	NA	False	AATAAA	-19	NA	165021902	165001912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015816_165015904_165021808
ENSMUSG00000040848.12_1	chr1	-	5433	8	FSM	ENSMUSG00000040848.12	ENSMUST00000043338.10	5535	8	95	7	-22	-7	multi-exon	FALSE	canonical	3	60	junction_5	7.62380803664362	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAAATGTAGTGTTGTCT	NA	False	NA	NA	False	AATAAA	-19	NA	165021912	165001912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015537_165015624_165015816_165015904_165021808
ENSMUSG00000040848.12_3	chr1	-	5347	9	NNC	ENSMUSG00000040848.12	novel	680	9	NA	NA	3	-6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	24.9019954019753	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATGTAGTGTTGTCTC	NA	False	NA	NA	False	AATAAA	-20	NA	165021883	165001911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_165004885_165004942_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015537_165015624_165015816_165015904_165021808
ENSMUSG00000040848.12_5	chr1	-	2594	1	ISM	ENSMUSG00000040848.12	ENSMUST00000043338.10	5535	8	17501	7	17380	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAAATGTAGTGTTGTCT	NA	False	NA	NA	False	AATAAA	-19	NA	165004506	165001912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_165001900_165004500
ENSMUSG00000040850.18_1	chr11	+	6415	47	FSM	ENSMUSG00000040850.18	ENSMUST00000041231.14	6491	47	55	21	55	-21	multi-exon	TRUE	canonical	2	239	junction_13	60.0854464039772	469	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAACATCAATAAAC	NA	False	NA	-4	True	TTTAAA	-4	NA	30721780	30830340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_30722225_30741091_30741233_30741921_30742039_30752813_30752859_30754289_30754440_30754962_30755027_30756254_30756330_30757702_30757826_30759835_30759929_30760782_30761049_30761977_30762165_30763662_30763753_30765227_30765293_30765557_30765709_30767730_30767830_30768088_30768159_30769003_30769072_30769927_30770144_30770915_30771074_30773058_30773155_30780349_30780406_30782133_30782191_30782388_30782445_30782531_30782631_30784085_30784149_30784273_30784370_30785335_30785468_30787281_30787492_30788884_30789022_30791568_30791623_30791990_30792121_30793506_30793589_30795179_30795334_30795827_30795898_30797397_30797524_30798046_30798200_30800602_30800708_30801142_30801235_30802672_30802805_30803176_30803386_30806029_30806116_30811347_30811477_30815433_30815590_30824117_30824281_30826745_30826880_30828378_30828518_30829663
ENSMUSG00000040852.7_0	chr17	+	6014	30	FSM	ENSMUSG00000040852.7	ENSMUST00000047206.7	6882	30	-7	875	-7	-875	multi-exon	FALSE	canonical	1	1	junction_17	2.89449845123218	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCCCTGTGTCGTCATTGT	NA	False	NA	NA	False	AATGAA	-12	NA	84819315	84928691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_84819393_84829123_84829254_84854890_84854954_84864799_84864950_84866917_84867002_84867515_84867598_84871245_84871426_84873398_84874364_84877303_84877380_84878469_84878565_84879095_84879241_84882358_84882496_84882594_84882706_84883144_84883232_84884585_84884745_84890892_84890974_84893724_84893905_84896812_84896922_84898187_84898301_84898964_84899145_84903635_84903734_84905325_84905504_84906562_84906719_84908112_84908211_84914248_84914391_84918184_84918331_84919065_84919196_84923604_84923692_84925359_84925495_84927051
ENSMUSG00000040855.16_1	chrX	-	592	1	ISM	ENSMUSG00000040855.16	ENSMUST00000154424.8	7146	16	152969	0	140034	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGTGGTGTCCTGGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	161195541	161194949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_161194900_161195500
ENSMUSG00000040855.16_2	chrX	-	7378	15	NIC	ENSMUSG00000040855.16	novel	7675	18	NA	NA	8	-4	combination_of_known_splicesites	TRUE	canonical	0	0	junction_6	1.01267477705413	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGATTTTGTGGTGTCCTG	NA	False	NA	NA	False	AATAAA	-14	NA	161426589	161194953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_161200608_161210648_161210755_161221643_161221790_161224032_161224117_161254790_161254853_161297274_161297348_161301324_161301420_161303116_161303260_161305917_161305982_161309253_161309393_161329750_161329846_161335538_161335663_161337792_161337942_161348223_161348348_161426269
ENSMUSG00000040856.18_0	chr12	+	1763	6	FSM	ENSMUSG00000040856.18	ENSMUST00000056110.15	4653	6	178	2712	178	6	multi-exon	FALSE	canonical	2	2	junction_1	11.0995495404093	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTAAAGAAATAAGTATGT	NA	False	NA	NA	False	NA	NA	NA	109418952	109426550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_109419221_109419512_109419653_109420910_109420975_109421418_109421550_109423999_109424142_109425532
ENSMUSG00000040856.18_1	chr12	+	1617	5	FSM	ENSMUSG00000040856.18	ENSMUST00000109844.11	1703	5	5	81	5	1	multi-exon	FALSE	canonical	3	24	junction_4	4.02336923485777	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGAGTTAAAGAAATAAG	NA	False	NA	NA	False	NA	NA	NA	109419385	109426545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_109419653_109420910_109420975_109421418_109421550_109423999_109424142_109425532
ENSMUSG00000040857.16_2	chr7	-	2706	4	FSM	ENSMUSG00000040857.16	ENSMUST00000045847.15	3505	4	32	767	1	-767	multi-exon	FALSE	canonical	3	7	junction_2	2.82842712474619	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGTGGTAATTTATCCTA	4513	False	NA	-15	True	AATAAA	-14	NA	24950154	24942752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24944957_24945058_24945175_24945512_24945748_24950003
ENSMUSG00000040857.16_3	chr7	-	634	1	ISM	ENSMUSG00000040857.16	ENSMUST00000045847.15	3505	4	6797	770	6766	-770	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCATGTGGTAATTTATC	NA	False	NA	-18	True	AATAAA	-11	NA	24943389	24942755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_24942800_24943400
ENSMUSG00000040859.15_1	chr4	+	2674	11	FSM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	102	47	-1	-47	multi-exon	FALSE	canonical	3	95	junction_3	13.6088206689632	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTTTACAGATTTGCCA	NA	False	NA	17	True	AATAAA	-13	NA	129355475	129382244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
ENSMUSG00000040859.15_13	chr4	+	2652	10	ISM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	360	47	105	-47	3prime_fragment	FALSE	canonical	3	95	junction_2	13.9920612412102	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTTTACAGATTTGCCA	NA	False	NA	17	True	AATAAA	-13	NA	129355733	129382244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
ENSMUSG00000040859.15_2	chr4	+	2586	11	NIC	ENSMUSG00000040859.15	novel	2823	11	NA	NA	-5	-48	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	36.7662889070953	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTTTACAGATTTGCC	NA	False	NA	16	True	AATAAA	-12	NA	129355471	129382243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_129355499_129355734_129355796_129359022_129359140_129360706_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
ENSMUSG00000040859.15_3	chr4	+	4157	10	NIC	ENSMUSG00000040859.15	novel	2823	11	NA	NA	0	-39	intron_retention	FALSE	canonical	3	105	junction_4	12.0840676660645	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATTTGCCATAACAGCA	NA	False	NA	25	True	AATAAA	-21	NA	129355476	129382252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_129355499_129355734_129355796_129359022_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
ENSMUSG00000040860.17_1	chr4	-	6536	37	FSM	ENSMUSG00000040860.17	ENSMUST00000102491.10	6582	37	43	3	-18	0	multi-exon	FALSE	canonical	2	3	junction_36	18.7163690158055	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTGGCTGTCCACTCAA	NA	False	NA	NA	False	NA	NA	NA	140780990	140743950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506_140752856_140753411_140753580_140755651_140755812_140756408_140756648_140757003_140757148_140757459_140757595_140758202_140758383_140760112_140760283_140761284_140761413_140761669_140761864_140762463_140762695_140762997_140763145_140763994_140764140_140765158_140765342_140768270_140768471_140768933_140769165_140769462_140769547_140770231_140770329_140770718_140770956_140773251_140773359_140773702_140773869_140773946_140774009_140774082_140774167_140774254_140774441_140778351_140778507_140780260_140780403_140780830
ENSMUSG00000040860.17_21	chr4	-	3380	17	ISM	ENSMUSG00000040860.17	ENSMUST00000040222.14	6248	35	22637	0	-1849	0	3prime_fragment	FALSE	canonical	3	61	junction_15	13.4018422241123	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTGGCTGTCCACTCAA	NA	False	NA	NA	False	NA	NA	NA	140758335	140743950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506_140752856_140753411_140753580_140755651_140755812_140756408_140756648_140757003_140757148_140757459_140757595_140758202
ENSMUSG00000040860.17_23	chr4	-	2709	13	FSM	ENSMUSG00000040860.17	ENSMUST00000151455.8	3407	13	695	3	695	0	multi-exon	FALSE	canonical	3	69	junction_12	12.9258032202602	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTGGCTGTCCACTCAA	NA	False	NA	NA	False	NA	NA	NA	140755791	140743950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506_140752856_140753411_140753580_140755651
ENSMUSG00000040860.17_30	chr4	-	2231	11	ISM	ENSMUSG00000040860.17	ENSMUST00000151455.8	3407	13	3799	5	-2830	-2	3prime_fragment	FALSE	canonical	3	70	junction_4	12.2702893201424	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGATTTGGCTGTCCACTC	NA	False	NA	NA	False	NA	NA	NA	140752687	140743952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506
ENSMUSG00000040860.17_31	chr4	-	6477	37	NIC	ENSMUSG00000040860.17	novel	6582	37	NA	NA	0	-37	combination_of_known_junctions	FALSE	canonical	3	40	junction_29	15.4433452846282	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCGTTTGTGCTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	140785510	140743987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506_140752856_140753411_140753580_140755651_140755812_140756408_140756648_140757003_140757148_140757459_140757595_140758202_140758383_140760112_140760283_140761284_140761413_140761669_140761864_140762463_140762695_140762997_140763145_140763994_140764140_140765158_140765342_140768270_140768471_140768933_140769165_140769462_140769547_140770231_140770329_140770718_140770956_140773251_140773359_140773702_140773869_140773946_140774009_140774082_140774167_140774254_140774441_140778351_140778507_140780260_140780403_140785372
ENSMUSG00000040860.17_33	chr4	-	6502	38	NIC	ENSMUSG00000040860.17	novel	6582	37	NA	NA	1	-37	combination_of_known_junctions	FALSE	canonical	2	15	junction_37	17.566278538987	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCGTTTGTGCTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	140787860	140743987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506_140752856_140753411_140753580_140755651_140755812_140756408_140756648_140757003_140757148_140757459_140757595_140758202_140758383_140760112_140760283_140761284_140761413_140761669_140761864_140762463_140762695_140762997_140763145_140763994_140764140_140765158_140765342_140768270_140768471_140768933_140769165_140769462_140769547_140770231_140770329_140770718_140770956_140773251_140773359_140773702_140773869_140773946_140774009_140774082_140774167_140774254_140774441_140778351_140778507_140780260_140780403_140785372_140785509_140787833
ENSMUSG00000040860.17_41	chr4	-	4332	23	ISM	ENSMUSG00000040860.17	ENSMUST00000040222.14	6248	35	16945	-2	-7541	-1	3prime_fragment	TRUE	canonical	3	55	junction_21	13.7894438006244	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGCTGTCCACTCAAAT	NA	False	NA	NA	False	NA	NA	NA	140764027	140743948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506_140752856_140753411_140753580_140755651_140755812_140756408_140756648_140757003_140757148_140757459_140757595_140758202_140758383_140760112_140760283_140761284_140761413_140761669_140761864_140762463_140762695_140762997_140763145_140763994
ENSMUSG00000040860.17_8	chr4	-	6630	38	NNC	ENSMUSG00000040860.17	novel	6582	37	NA	NA	69	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_37	17.8135379120419	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTGGCTGTCCACTCAA	NA	False	NA	NA	False	NA	NA	NA	140787787	140743950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506_140752856_140753411_140753580_140755651_140755812_140756408_140756648_140757003_140757148_140757459_140757595_140758202_140758383_140760112_140760283_140761284_140761413_140761669_140761864_140762463_140762695_140762997_140763145_140763994_140764140_140765158_140765342_140768270_140768471_140768933_140769165_140769462_140769547_140770231_140770329_140770718_140770956_140773251_140773359_140773702_140773869_140773946_140774009_140774082_140774167_140774254_140774441_140778351_140778507_140780260_140780403_140785372_140785509_140787669
ENSMUSG00000040865.16_0	chr1	-	3740	1	ISM	ENSMUSG00000040865.16	ENSMUST00000165066.8	13529	12	62724	3	12018	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCTTGCTTTTATTAATT	5296	False	NA	-3	True	AATAAA	-14	NA	63090702	63086962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_63087000_63090700
ENSMUSG00000040867.14_0	chr12	-	2515	5	ISM	ENSMUSG00000040867.14	ENSMUST00000239108.2	2117	7	14833	-596	-1855	0	3prime_fragment	FALSE	canonical	2	2	junction_1	3.74165738677394	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGCCCAGGTTTGCATT	9395	False	NA	-6	True	AATAAA	-13	NA	109004868	108998112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_109000278_109001253_109001338_109002921_109003030_109003578_109003646_109004777
ENSMUSG00000040867.14_1	chr12	-	961	1	ISM	ENSMUSG00000040867.14	ENSMUST00000209829.2	3272	7	26280	0	3940	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGCCCAGGTTTGCATT	NA	False	NA	-6	True	AATAAA	-13	NA	108999073	108998112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_108998100_108999100
ENSMUSG00000040867.14_2	chr12	-	2733	7	FSM	ENSMUSG00000040867.14	ENSMUST00000190647.3	2707	7	-26	0	-26	0	multi-exon	FALSE	canonical	2	2	junction_1	3.3870669054836	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGCCCAGGTTTGCATT	NA	False	NA	-6	True	AATAAA	-13	NA	109034169	108998112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_109000278_109001253_109001338_109002921_109003030_109003578_109003646_109004777_109004940_109018759_109018789_109034051
ENSMUSG00000040867.14_3	chr12	-	3682	6	NIC	ENSMUSG00000040867.14	novel	2707	7	NA	NA	1	0	intron_retention	FALSE	canonical	3	8	junction_3	1.6	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGCCCAGGTTTGCATT	NA	False	NA	-6	True	AATAAA	-13	NA	109034142	108998112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_109001338_109002921_109003030_109003578_109003646_109004777_109004940_109018759_109018789_109034051
ENSMUSG00000040875.13_1	chr9	+	3655	12	FSM	ENSMUSG00000040875.13	ENSMUST00000183104.8	2477	12	-136	-1042	-136	1040	multi-exon	FALSE	canonical	3	27	junction_1	15.4807264868928	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAATACTCTTGTGTCTT	NA	False	NA	NA	False	AATATA	-6	NA	114807500	115062333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_114808033_114890900_114891077_114896313_114896394_114938467_114938660_114996149_114996361_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
ENSMUSG00000040875.13_16	chr9	+	2534	8	NNC	ENSMUSG00000040875.13	novel	2477	12	NA	NA	49425	1043	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	21.4466590329	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTTGTGTCTTGTG	64	False	NA	NA	False	AATATA	-9	NA	114999031	115062336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_114999099_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
ENSMUSG00000040875.13_22	chr9	+	2214	5	ISM	ENSMUSG00000040875.13	ENSMUST00000046627.6	1872	10	149215	-1042	95955	1040	3prime_fragment	FALSE	canonical	3	73	junction_2	2.54950975679639	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAATACTCTTGTGTCTT	6030	False	NA	NA	False	AATATA	-6	NA	115045561	115062333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
ENSMUSG00000040875.13_6	chr9	+	3475	11	NIC	ENSMUSG00000040875.13	novel	2477	12	NA	NA	-145	1043	combination_of_known_splicesites	FALSE	canonical	2	9	junction_3	22.127132665576	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTTGTGTCTTGTG	NA	False	NA	NA	False	AATATA	-9	NA	114807491	115062336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_114808033_114890900_114891077_114896313_114896394_114996149_114996361_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
ENSMUSG00000040875.13_8	chr9	+	3183	12	FSM	ENSMUSG00000040875.13	ENSMUST00000182384.8	2158	12	18	-1043	18	1043	multi-exon	FALSE	canonical	1	3	junction_1	20.7380354832004	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTTGTGTCTTGTG	NA	False	NA	NA	False	AATATA	-9	NA	114819833	115062336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_114819891_114890900_114891077_114896313_114896394_114938467_114938660_114996149_114996361_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
ENSMUSG00000040877.17_13	chr12	+	2812	8	NIC	ENSMUSG00000040877.17	novel	4356	8	NA	NA	2	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	25.1054917156728	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAGACTTGCCGTGGT	4873	False	NA	NA	False	NA	NA	NA	108860220	108994371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_108860257_108862817_108862986_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
ENSMUSG00000040877.17_18	chr12	+	2547	6	ISM	ENSMUSG00000040877.17	ENSMUST00000047115.9	4356	8	3653	7	3653	-3	3prime_fragment	FALSE	canonical	3	34	junction_1	15.1208465371486	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAGACTTGCCGTGGT	8548	False	NA	NA	False	NA	NA	NA	108863895	108994371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
ENSMUSG00000040877.17_26	chr12	+	1792	5	ISM	ENSMUSG00000040877.17	ENSMUST00000047115.9	4356	8	86373	7	-40112	-3	3prime_fragment	FALSE	canonical	3	37	junction_2	13.7477270848675	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAGACTTGCCGTGGT	NA	False	NA	NA	False	NA	NA	NA	108946615	108994371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
ENSMUSG00000040877.17_3	chr12	+	2655	7	NIC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-9	-3	combination_of_known_junctions	FALSE	canonical	2	14	junction_1	19.6694913225759	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAGACTTGCCGTGGT	4862	False	NA	NA	False	NA	NA	NA	108860209	108994371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_108860257_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
ENSMUSG00000040877.17_30	chr12	+	1558	4	NNC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-17600	-3	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	31.6262900483478	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAGACTTGCCGTGGT	NA	False	NA	NA	False	NA	NA	NA	108969127	108994371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_108969174_108990888_108991060_108992335_108992477_108993171
ENSMUSG00000040877.17_31	chr12	+	1646	4	NNC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-5167	-3	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	28.3313724811677	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAGACTTGCCGTGGT	NA	False	NA	NA	False	NA	NA	NA	108981560	108994371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_108981695_108990888_108991060_108992335_108992477_108993171
ENSMUSG00000040877.17_4	chr12	+	2642	7	NNC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	23.6713610367747	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAGACTTGCCGTGGT	4870	False	NA	NA	False	NA	NA	NA	108860217	108994371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_108860252_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
ENSMUSG00000040877.17_47	chr12	+	1494	3	ISM	ENSMUSG00000040877.17	ENSMUST00000221510.2	1600	4	4179	3	4179	-3	3prime_fragment	FALSE	canonical	3	67	junction_2	2	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAGACTTGCCGTGGT	NA	False	NA	NA	False	NA	NA	NA	108990906	108994371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_108991060_108992335_108992477_108993171
ENSMUSG00000040877.17_5	chr12	+	2807	8	NNC	ENSMUSG00000040877.17	novel	4356	8	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	25.1054917156728	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAGACTTGCCGTGGT	4873	False	NA	NA	False	NA	NA	NA	108860220	108994371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_108860252_108862817_108862986_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
ENSMUSG00000040883.19_1	chr9	-	681	4	FSM	ENSMUSG00000040883.19	ENSMUST00000046831.11	785	4	103	1	-71	0	multi-exon	FALSE	canonical	3	136	junction_3	45.9879211194514	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGCCATGGTCATTTTT	NA	False	NA	-7	True	AATAAA	-12	NA	21838655	21832305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838587
ENSMUSG00000040883.19_2	chr9	-	1623	3	ISM	ENSMUSG00000040883.19	ENSMUST00000213698.2	705	4	-79	-16	-79	0	intron_retention	FALSE	canonical	3	227	junction_2	6	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGCCATGGTCATTTTT	NA	False	NA	-7	True	AATAAA	-12	NA	21838663	21832305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21832646_21837286_21837451_21837544
ENSMUSG00000040883.19_3	chr9	-	714	4	FSM	ENSMUSG00000040883.19	ENSMUST00000238930.2	862	4	148	0	75	0	multi-exon	FALSE	canonical	3	48	junction_3	87.3473271231327	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGCCATGGTCATTTTT	NA	False	NA	-7	True	AATAAA	-12	NA	21838683	21832305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838582
ENSMUSG00000040883.19_5	chr9	-	1277	4	FSM	ENSMUSG00000040883.19	ENSMUST00000214569.2	879	4	-316	-82	-51	-1	multi-exon	FALSE	canonical	3	12	junction_3	104.295520304352	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATGGCCATGGTCATTTT	NA	False	NA	-8	True	AATAAA	-11	NA	21838635	21832306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21837970
ENSMUSG00000040888.11_0	chr17	-	1149	4	NNC	ENSMUSG00000040888.11	novel	1177	4	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	273.584843634779	182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGGCTGGTTTCTGTGTGC	NA	False	NA	-11	True	AATAAA	-13	NA	24915066	24912164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_24912587_24913148_24913417_24914227_24914425_24914804
ENSMUSG00000040888.11_17	chr17	-	703	3	FSM	ENSMUSG00000040888.11	ENSMUST00000046839.10	1776	3	65	1008	-1	-13	multi-exon	FALSE	canonical	3	527	junction_2	47.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTTGTTTCTGTAGTTG	NA	False	NA	-7	True	ATTAAA	-14	NA	24915065	24913171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24913417_24914227_24914425_24914804
ENSMUSG00000040888.11_2	chr17	-	1586	3	NNC	ENSMUSG00000040888.11	novel	1177	4	NA	NA	7	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	311	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGGCTGGTTTCTGTGTGC	NA	False	NA	-11	True	AATAAA	-13	NA	24915123	24912164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_24912587_24913148_24913417_24914227
ENSMUSG00000040891.7_0	chr7	-	2043	2	FSM	ENSMUSG00000040891.7	ENSMUST00000036018.6	2037	2	-7	1	-7	-1	multi-exon	FALSE	canonical	3	25	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTTAGTGTCTTTTTCT	NA	False	NA	-4	True	ATTAAA	-15	NA	18757470	18747209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_18749056_18757273
ENSMUSG00000040904.11_1	chr11	-	1662	8	NIC	ENSMUSG00000040904.11	novel	1621	8	NA	NA	-3	-2	combination_of_known_splicesites	FALSE	canonical	3	195	junction_1	193.976013665481	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70130632	70126033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_70126291_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609_70129297_70129763_70129841_70130481
ENSMUSG00000040904.11_4	chr11	-	593	3	ISM	ENSMUSG00000040904.11	ENSMUST00000176116.8	1688	8	0	2920	0	-2876	5prime_fragment	FALSE	canonical	3	75	junction_2	325.5	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTGCTGTCTGTGCTTT	NA	False	NA	-3	True	AATAAA	-18	NA	70130656	70128951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_70129297_70129763_70129841_70130485
ENSMUSG00000040907.16_0	chr7	-	2203	14	ISM	ENSMUSG00000040907.16	ENSMUST00000196684.2	3642	23	11506	3	11458	-3	3prime_fragment	FALSE	canonical	3	25	junction_10	11.3648477030539	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAGATGTGTGTGTGTT	NA	False	NA	-7	True	AATATA	-12	NA	24693862	24677597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556_24693692_24693774
ENSMUSG00000040907.16_1	chr7	-	3570	23	FSM	ENSMUSG00000040907.16	ENSMUST00000080882.11	3621	23	47	4	-4	-1	multi-exon	FALSE	canonical	2	6	junction_18	15.2038490124504	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATGTGTGTGTGTTAT	NA	False	NA	-5	True	AATATA	-14	NA	24705336	24677595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556_24693692_24693774_24693885_24693960_24694160_24696556_24696826_24696937_24697056_24698098_24698234_24698324_24698439_24700001_24700206_24700344_24700405_24700496_24700584_24705179
ENSMUSG00000040907.16_10	chr7	-	3605	23	FSM	ENSMUSG00000040907.16	ENSMUST00000196684.2	3642	23	32	5	-4	-5	multi-exon	FALSE	canonical	0	0	junction_22	15.6939347130304	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAAAGATGTGTGTGTG	NA	False	NA	-9	True	AATATA	-10	NA	24705336	24677599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556_24693692_24693774_24693885_24693960_24694160_24696556_24696826_24696937_24697056_24698098_24698234_24698324_24698439_24700001_24700206_24700344_24700405_24700496_24700623_24705179
ENSMUSG00000040907.16_2	chr7	-	2693	15	ISM	ENSMUSG00000040907.16	ENSMUST00000196684.2	3642	23	10937	6	10889	-6	3prime_fragment	FALSE	canonical	3	12	junction_14	12.7849161762075	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAAAAGATGTGTGTGT	NA	False	NA	-10	True	AATATA	-9	NA	24694431	24677600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556_24693692_24693774_24693885_24693960
ENSMUSG00000040907.16_3	chr7	-	2288	13	ISM	ENSMUSG00000040907.16	ENSMUST00000196684.2	3642	23	11506	1	11458	-1	intron_retention	FALSE	canonical	3	25	junction_10	11.3907857498945	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATGTGTGTGTGTTAT	NA	False	NA	-5	True	AATATA	-14	NA	24693862	24677595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556
ENSMUSG00000040907.16_6	chr7	-	1810	12	ISM	ENSMUSG00000040907.16	ENSMUST00000196684.2	3642	23	15560	1	15512	-1	3prime_fragment	FALSE	canonical	3	25	junction_10	11.7198708141697	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATGTGTGTGTGTTAT	NA	False	NA	-5	True	AATATA	-14	NA	24689808	24677595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787
ENSMUSG00000040907.16_8	chr7	-	2854	18	ISM	ENSMUSG00000040907.16	ENSMUST00000196684.2	3642	23	7229	1	7181	-1	3prime_fragment	FALSE	canonical	3	12	junction_14	14.0665742848331	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATGTGTGTGTGTTAT	NA	False	NA	-5	True	AATATA	-14	NA	24698139	24677595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556_24693692_24693774_24693885_24693960_24694160_24696556_24696826_24696937_24697056_24698098
ENSMUSG00000040907.16_9	chr7	-	1288	8	NNC	ENSMUSG00000040907.16	novel	3621	23	NA	NA	18655	-1	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_7	17.1499985125245	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATGTGTGTGTGTTAT	NA	False	NA	-5	True	AATATA	-14	NA	24686665	24677595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686533
ENSMUSG00000040913.12_1	chr19	-	2235	9	FSM	ENSMUSG00000040913.12	ENSMUST00000046869.11	2068	9	-172	5	-172	-5	multi-exon	FALSE	canonical	3	63	junction_8	9.07520660921833	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAATCTGGTTCTTTGGTG	NA	False	NA	-10	True	AATAAA	-13	NA	45648923	45566697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_45567365_45567559_45567702_45568091_45568233_45580167_45580234_45619303_45619399_45624173_45624307_45624701_45624888_45628864_45628961_45648214
ENSMUSG00000040913.12_2	chr19	-	386	1	ISM	ENSMUSG00000040913.12	ENSMUST00000160718.9	1295	5	52496	3	1248	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTTCTTTGGTGGT	NA	False	NA	-8	True	AATAAA	-15	NA	45567081	45566695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_45566700_45567100
ENSMUSG00000040913.12_4	chr19	-	2179	9	NIC	ENSMUSG00000040913.12	novel	2068	9	NA	NA	-171	-5	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	23.8275051148877	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAATCTGGTTCTTTGGTG	NA	False	NA	-10	True	AATAAA	-13	NA	45648922	45566697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_45567365_45567559_45567647_45568091_45568233_45580167_45580234_45619303_45619399_45624173_45624307_45624701_45624888_45628864_45628961_45648214
ENSMUSG00000040918.13_11	chr1	+	3420	6	FSM	ENSMUSG00000040918.13	ENSMUST00000159230.8	3432	6	4	8	4	-8	multi-exon	FALSE	canonical	3	46	junction_2	97.8296478578963	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTAAATTTTCCCTTTTC	NA	False	NA	5	True	AATAAA	-7	NA	164076627	164092930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_164077026_164084315_164084805_164088360_164088587_164089615_164089809_164090188_164090331_164090958
ENSMUSG00000040918.13_24	chr1	+	2881	5	ISM	ENSMUSG00000040918.13	ENSMUST00000044021.12	3571	6	7956	24	-5351	-8	3prime_fragment	FALSE	canonical	3	256	junction_2	19.9295634673718	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTAAATTTTCCCTTTTC	NA	False	NA	5	True	AATAAA	-7	NA	164084570	164092930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_164084919_164088360_164088587_164089615_164089809_164090188_164090331_164090958
ENSMUSG00000040918.13_26	chr1	+	1484	1	ISM	ENSMUSG00000040918.13	ENSMUST00000044021.12	3571	6	14836	20	1529	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTTTCCCTTTTCACTC	NA	False	NA	9	True	AATAAA	-11	NA	164091450	164092934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_164091400_164092900
ENSMUSG00000040918.13_3	chr1	+	3551	7	NNC	ENSMUSG00000040918.13	novel	3571	6	NA	NA	-85	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	106.800046816469	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTAAATTTTCCCTTTTC	NA	False	NA	5	True	AATAAA	-7	NA	164076529	164092930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_164076540_164076620_164077026_164084315_164084919_164088360_164088587_164089615_164089809_164090188_164090331_164090958
ENSMUSG00000040918.13_9	chr1	+	3537	6	FSM	ENSMUSG00000040918.13	ENSMUST00000044021.12	3571	6	12	22	3	-6	multi-exon	FALSE	canonical	3	256	junction_3	19.417517864032	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAATTTTCCCTTTTCAC	NA	False	NA	7	True	AATAAA	-9	NA	164076626	164092932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_164077026_164084315_164084919_164088360_164088587_164089615_164089809_164090188_164090331_164090958
ENSMUSG00000040928.16_0	chr4	-	4333	7	NIC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	-2	0	intron_retention	FALSE	canonical	3	119	junction_6	30.1482448355898	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1111	False	NA	-5	True	AATAAA	-15	NA	129083412	129041797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393_129077511_129083334
ENSMUSG00000040928.16_1	chr4	-	4094	9	FSM	ENSMUSG00000040928.16	ENSMUST00000072431.13	4059	9	-33	-2	-3	2	multi-exon	FALSE	canonical	3	18	junction_6	67.6456761367643	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTACTGTGGCCGTCTG	1118	False	NA	-3	True	AATAAA	-17	NA	129083405	129041795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129075894_129076001_129076326_129077393_129077511_129083334
ENSMUSG00000040928.16_14	chr4	-	4202	8	NIC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	3	0	intron_retention	FALSE	canonical	3	49	junction_5	52.6272995037863	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1116	False	NA	-5	True	AATAAA	-15	NA	129083407	129041797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129076326_129077393_129077511_129083334
ENSMUSG00000040928.16_18	chr4	-	4239	6	NIC	ENSMUSG00000040928.16	novel	4426	7	NA	NA	26	0	intron_retention	FALSE	canonical	2	7	junction_5	75.8762149820351	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1258	False	NA	-5	True	AATAAA	-15	NA	129083265	129041797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129083164
ENSMUSG00000040928.16_19	chr4	-	4257	6	ISM	ENSMUSG00000040928.16	ENSMUST00000106061.9	4426	7	5823	0	-1189	0	3prime_fragment	FALSE	canonical	3	157	junction_5	17.239489551608	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	7011	False	NA	-5	True	AATAAA	-15	NA	129077512	129041797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393
ENSMUSG00000040928.16_2	chr4	-	1909	1	ISM	ENSMUSG00000040928.16	ENSMUST00000106061.9	4426	7	39629	0	28395	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	NA	False	NA	-5	True	AATAAA	-15	NA	129043706	129041797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129041800_129043700
ENSMUSG00000040928.16_3	chr4	-	4208	6	NIC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	-2	0	intron_retention	FALSE	canonical	3	52	junction_5	57.9931030382062	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1119	False	NA	-5	True	AATAAA	-15	NA	129083404	129041797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129083334
ENSMUSG00000040928.16_4	chr4	-	4360	7	FSM	ENSMUSG00000040928.16	ENSMUST00000106061.9	4426	7	66	0	22	0	multi-exon	FALSE	canonical	3	32	junction_6	60.2301142840246	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1254	False	NA	-5	True	AATAAA	-15	NA	129083269	129041797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393_129077511_129083164
ENSMUSG00000040928.16_8	chr4	-	3977	9	FSM	ENSMUSG00000040928.16	ENSMUST00000106059.8	4084	9	107	0	-3	0	multi-exon	FALSE	canonical	3	25	junction_6	66.0793793478722	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1110	False	NA	-5	True	AATAAA	-15	NA	129083413	129041797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129075894_129076124_129076326_129077393_129077511_129083334
ENSMUSG00000040929.18_0	chr19	-	4204	1	ISM	ENSMUSG00000040929.18	ENSMUST00000165566.8	9146	18	217013	11	70911	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACATTTGAAATGGCTT	NA	False	NA	-9	True	AATAAA	-15	NA	27743335	27739131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_27739100_27743300
ENSMUSG00000040929.18_3	chr19	-	2761	17	FSM	ENSMUSG00000040929.18	ENSMUST00000174850.8	2743	17	-24	6	2	-4	multi-exon	TRUE	canonical	0	0	junction_16	2.87160125191504	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTTATTGTTGATT	NA	False	NA	NA	False	ATTAAA	-24	NA	27988564	27745544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_27746094_27748028_27748072_27764013_27764168_27771010_27771220_27777516_27777667_27779781_27779880_27783587_27783743_27784192_27784309_27790977_27791091_27792884_27793007_27803432_27803553_27808010_27808193_27814806_27814882_27827110_27827370_27844912_27845011_27878178_27878304_27988371
ENSMUSG00000040935.13_0	chr4	-	895	4	ISM	ENSMUSG00000040935.13	ENSMUST00000038749.11	2333	16	11519	6	1919	-6	intron_retention	FALSE	canonical	3	19	junction_1	1.24721912892465	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTATGTTTTTACGCCG	NA	False	NA	NA	False	AATAAA	-13	NA	140458435	140454671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_140455121_140456177_140456340_140457019_140457091_140458222
ENSMUSG00000040936.16_0	chr9	-	4087	37	FSM	ENSMUSG00000040936.16	ENSMUST00000171923.8	4103	37	12	4	-4	-4	multi-exon	TRUE	canonical	2	8	junction_10	8.07583653886513	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACCTCATGTGTCAAACC	NA	False	NA	-5	True	AATAAA	-12	NA	121106251	120793523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_120793675_120795462_120795549_120873751_120873938_120902983_120903083_120910629_120910797_120932612_120932719_120955515_120955565_120970899_120970993_120974052_120974198_120974400_120974453_120981155_120981251_120981343_120981396_120986038_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086485_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
ENSMUSG00000040936.16_11	chr9	-	3878	34	FSM	ENSMUSG00000040936.16	ENSMUST00000051479.13	3898	34	19	1	17	-1	multi-exon	FALSE	canonical	2	8	junction_7	7.8557939524016	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGATGTGTAATAGTGGGT	NA	False	NA	NA	False	ATTAAA	-15	NA	121106219	120902737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_120903083_120910629_120910797_120932612_120932719_120955515_120955565_120970899_120970993_120974052_120974198_120974400_120974453_120981155_120981251_120981343_120981396_120986038_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086485_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
ENSMUSG00000040936.16_14	chr9	-	2953	25	NIC	ENSMUSG00000040936.16	novel	4200	35	NA	NA	-2	33	combination_of_known_junctions	FALSE	canonical	3	18	junction_8	5.47579902845238	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACATTCTCTCCTGA	NA	False	NA	NA	False	AATAAA	-15	NA	121106240	120985883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086488_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
ENSMUSG00000040936.16_16	chr9	-	2940	25	ISM	ENSMUSG00000040936.16	ENSMUST00000051479.13	3898	34	8	83147	6	33	5prime_fragment	FALSE	canonical	3	16	junction_16	5.64564114064017	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACATTCTCTCCTGA	NA	False	NA	NA	False	AATAAA	-15	NA	121106230	120985883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086485_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
ENSMUSG00000040936.16_18	chr9	-	2737	23	NIC	ENSMUSG00000040936.16	novel	4200	35	NA	NA	20	33	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	7.91744595265564	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACATTCTCTCCTGA	NA	False	NA	NA	False	AATAAA	-15	NA	121106216	120985883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086488_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
ENSMUSG00000040936.16_2	chr9	-	4093	37	NIC	ENSMUSG00000040936.16	novel	4103	37	NA	NA	-7	-4	combination_of_known_junctions	FALSE	canonical	2	8	junction_10	8.02772971919486	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACCTCATGTGTCAAACC	NA	False	NA	-5	True	AATAAA	-12	NA	121106254	120793523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_120793675_120795462_120795549_120873751_120873938_120902983_120903083_120910629_120910797_120932612_120932719_120955515_120955565_120970899_120970993_120974052_120974198_120974400_120974453_120981155_120981251_120981343_120981396_120986038_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086488_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
ENSMUSG00000040936.16_7	chr9	-	2311	21	ISM	ENSMUSG00000040936.16	ENSMUST00000171923.8	4103	37	32780	4	12991	-4	3prime_fragment	FALSE	canonical	2	8	junction_10	7.57033684851606	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACCTCATGTGTCAAACC	NA	False	NA	-5	True	AATAAA	-12	NA	121073483	120793523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_120793675_120795462_120795549_120873751_120873938_120902983_120903083_120910629_120910797_120932612_120932719_120955515_120955565_120970899_120970993_120974052_120974198_120974400_120974453_120981155_120981251_120981343_120981396_120986038_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431
ENSMUSG00000040938.17_1	chr11	+	2219	2	NIC	ENSMUSG00000040938.17	novel	1788	4	NA	NA	-11	-5	intron_retention	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTACCCTCTTGAGAGTT	NA	False	NA	NA	False	AATAAA	-9	NA	70104929	70107233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70106878_70106962
ENSMUSG00000040938.17_3	chr11	+	2291	1	NIC	ENSMUSG00000040938.17	novel	1938	7	NA	NA	0	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTCTTGAGAGTTCCATT	NA	False	NA	NA	False	AATAAA	-14	NA	70104947	70107238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70104900_70107200
ENSMUSG00000040940.19_1	chr7	+	3214	29	FSM	ENSMUSG00000040940.19	ENSMUST00000047873.16	3212	29	-6	4	-6	-4	multi-exon	FALSE	canonical	3	35	junction_1	58.1352662647508	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAAGATCTGTGTGTGT	8548	False	NA	27	True	AATATA	-9	NA	24602455	24626010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24602554_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616225_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
ENSMUSG00000040940.19_10	chr7	+	3219	29	NIC	ENSMUSG00000040940.19	novel	3214	29	NA	NA	-13	-4	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	60.0176844686597	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAAGATCTGTGTGTGT	9909	False	NA	27	True	AATATA	-9	NA	24603816	24626010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_24603923_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616228_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
ENSMUSG00000040940.19_9	chr7	+	3222	29	FSM	ENSMUSG00000040940.19	ENSMUST00000117419.8	3214	29	-15	7	-13	-4	multi-exon	FALSE	canonical	3	251	junction_1	33.6220742600902	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAAGATCTGTGTGTGT	9909	False	NA	27	True	AATATA	-9	NA	24603816	24626010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24603923_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616225_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
ENSMUSG00000040943.13_0	chr3	-	4692	2	ISM	ENSMUSG00000040943.13	ENSMUST00000197211.2	3186	3	2358	-2164	2358	0	3prime_fragment	FALSE	canonical	3	212	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAAGTATTCTGTTGCAG	NA	False	NA	-9	True	AATAAA	-20	NA	133175220	133169443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_133173952_133175036
ENSMUSG00000040943.13_1	chr3	-	3076	1	ISM	ENSMUSG00000040943.13	ENSMUST00000098603.8	9179	11	77632	4	5059	0	mono-exon	FALSE	NA	NA	NA	NA	NA	209	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAAGTATTCTGTTGCAG	NA	False	NA	-9	True	AATAAA	-20	NA	133172519	133169443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_133169400_133172500
ENSMUSG00000040943.13_15	chr3	-	6724	10	ISM	ENSMUSG00000040943.13	ENSMUST00000196398.5	9021	12	57785	-151	-5901	-5	3prime_fragment	FALSE	canonical	3	63	junction_5	39.5699100046712	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCACTCAAGTATTCTGT	NA	False	NA	-14	True	AATAAA	-15	NA	133192344	133169448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_133173952_133175036_133175401_133177100_133177239_133179356_133179447_133182245_133182397_133185102_133185127_133185893_133186103_133187094_133187189_133188999_133189079_133191272
ENSMUSG00000040943.13_21	chr3	-	9113	12	FSM	ENSMUSG00000040943.13	ENSMUST00000196398.5	9021	12	62	-154	-4	-2	multi-exon	FALSE	canonical	3	63	junction_5	40.7374175676692	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCAAGTATTCTGTTGC	NA	False	NA	-11	True	AATAAA	-18	NA	133250067	133169445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_133173952_133175036_133175401_133177100_133177239_133179356_133179447_133182245_133182397_133185102_133185127_133185893_133186103_133187094_133187189_133188999_133189079_133191272_133194479_133219789_133219935_133249960
ENSMUSG00000040943.13_3	chr3	-	9107	12	NNC	ENSMUSG00000040943.13	novel	9021	12	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	35.1295124450667	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAAGTATTCTGTTGCAG	NA	False	NA	-9	True	AATAAA	-20	NA	133250062	133169443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_133173952_133175036_133175401_133177100_133177239_133179356_133179447_133182245_133182394_133185102_133185127_133185893_133186103_133187094_133187189_133188999_133189079_133191272_133194479_133219789_133219935_133249960
ENSMUSG00000040943.13_5	chr3	-	5230	5	ISM	ENSMUSG00000040943.13	ENSMUST00000098603.8	9179	11	67774	6	-46	-2	3prime_fragment	FALSE	canonical	3	156	junction_3	23.0108669980077	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCAAGTATTCTGTTGC	NA	False	NA	-11	True	AATAAA	-18	NA	133182377	133169445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_133173952_133175036_133175401_133177100_133177239_133179356_133179447_133182245
ENSMUSG00000040943.13_7	chr3	-	6729	10	NNC	ENSMUSG00000040943.13	novel	9021	12	NA	NA	-5904	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	31.2516666222246	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAAGTATTCTGTTGCAG	NA	False	NA	-9	True	AATAAA	-20	NA	133192347	133169443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_133173952_133175036_133175401_133177100_133177239_133179356_133179447_133182245_133182394_133185102_133185127_133185893_133186103_133187094_133187189_133188999_133189079_133191272
ENSMUSG00000040945.14_2	chr4	+	1959	13	FSM	ENSMUSG00000040945.14	ENSMUST00000038893.6	3767	13	57	1751	57	-1751	multi-exon	FALSE	canonical	3	3313	junction_2	495.610285966257	6886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTAAGTTGTATTTCTT	2438	False	NA	12	True	NA	NA	NA	140428840	140448780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_140428962_140429457_140429747_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
ENSMUSG00000040945.14_72	chr4	+	1820	12	ISM	ENSMUSG00000040945.14	ENSMUST00000038893.6	3767	13	692	1751	692	-1751	3prime_fragment	FALSE	canonical	3	3313	junction_1	471.181177976518	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTAAGTTGTATTTCTT	3073	False	NA	12	True	NA	NA	NA	140429475	140448780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_140429747_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
ENSMUSG00000040950.14_0	chr11	+	1209	3	ISM	ENSMUSG00000040950.14	ENSMUST00000108584.2	1307	8	1981	-247	1981	-6	3prime_fragment	FALSE	canonical	1	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAATTTGTCTTAGCT	145	False	NA	NA	False	NA	NA	NA	70026979	70028368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_70027164_70027266_70027419_70027495
ENSMUSG00000040952.17_0	chr7	+	510	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108430.10	774	6	262	2	0	0	multi-exon	FALSE	canonical	3	8873	junction_5	7497.54368843557	2457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGGTCTGGATCTGGT	NA	False	NA	24	True	AATAAA	-14	NA	24584057	24589229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
ENSMUSG00000040952.17_37	chr7	+	475	5	ISM	ENSMUSG00000040952.17	ENSMUST00000108429.8	633	6	421	3	218	1	3prime_fragment	FALSE	canonical	3	8873	junction_4	7833.34750840916	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCCTGGTCTGGATCTGG	NA	False	NA	23	True	AATAAA	-13	NA	24584559	24589228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
ENSMUSG00000040952.17_7	chr7	+	591	7	FSM	ENSMUSG00000040952.17	ENSMUST00000129847.8	593	7	0	2	0	0	multi-exon	FALSE	canonical	3	397	junction_3	8759.20174096298	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGGTCTGGATCTGGT	NA	False	NA	24	True	AATAAA	-14	NA	24584057	24589229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24585531_24585613_24587706_24587891_24588331_24588387_24589165
ENSMUSG00000040957.16_1	chr18	+	3065	10	FSM	ENSMUSG00000040957.16	ENSMUST00000171109.9	3396	10	324	7	270	-7	multi-exon	FALSE	canonical	3	22	junction_4	6.21428064627092	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATACATAAATGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	11972600	12078676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_11973591_12015770_12015843_12021793_12021887_12038981_12039060_12056416_12056514_12057871_12058029_12059317_12059422_12072775_12072883_12074236_12074445_12077517
ENSMUSG00000040957.16_14	chr18	+	1755	1	NIC	ENSMUSG00000040957.16	novel	3396	10	NA	NA	272	-104264	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATTATAGCACTGACTA	NA	False	NA	NA	False	AATAAA	-9	NA	11972602	11974357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_11972600_11974400
ENSMUSG00000040957.16_2	chr18	+	2983	9	FSM	ENSMUSG00000040957.16	ENSMUST00000046948.10	3202	9	272	-53	272	-9	multi-exon	FALSE	canonical	3	8	junction_3	10.1357967126418	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATATACATAAATGTGTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	11972602	12078674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_11973591_12015770_12015843_12021793_12021887_12056416_12056514_12057871_12058029_12059317_12059422_12072775_12072883_12074236_12074445_12077517
ENSMUSG00000040957.16_8	chr18	+	949	1	ISM	ENSMUSG00000040957.16	ENSMUST00000171109.9	3396	10	105455	3	100375	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAATGTGTGTGTGAAC	NA	False	NA	NA	False	ATTAAA	-22	NA	12077731	12078680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_12077700_12078700
ENSMUSG00000040963.16_0	chr11	+	1151	8	NNC	ENSMUSG00000040963.16	novel	672	5	NA	NA	-1581	-5	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	15.9885162870488	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACTCGTGTAGCCTGGT	5409	False	NA	NA	False	TATAAA	-43	NA	69986936	69997008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_69987005_69987627_69987745_69988004_69988101_69988645_69988718_69988878_69988966_69989053_69989200_69996201_69996309_69996550
ENSMUSG00000040964.17_0	chr4	-	4383	27	FSM	ENSMUSG00000040964.17	ENSMUST00000097820.9	4382	27	-9	8	-9	-8	multi-exon	FALSE	canonical	3	130	junction_20	26.9722901858523	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGTGGGCCCTGTGGGGT	NA	False	NA	-10	True	AATAAA	-10	NA	140376076	140241803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140375944
ENSMUSG00000040964.17_16	chr4	-	4505	28	FSM	ENSMUSG00000040964.17	ENSMUST00000039204.10	4493	28	-19	7	-13	-7	multi-exon	TRUE	canonical	3	51	junction_21	42.1702734351014	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGGGCCCTGTGGGGTT	NA	False	NA	-9	True	AATAAA	-11	NA	140376080	140241802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140314094_140314212_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140375944
ENSMUSG00000040972.9_0	chr4	-	1989	10	FSM	ENSMUSG00000040972.9	ENSMUST00000039331.9	1979	10	-17	7	-17	-7	multi-exon	FALSE	canonical	3	57	junction_6	13.4421485642992	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCAATGTCTGGCCCTAT	NA	False	NA	-6	True	ATTAAA	-21	NA	139974112	139754163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139761661_139762137_139764733_139764850_139794447_139794567_139834565_139834688_139884771_139884885_139973612
ENSMUSG00000040972.9_17	chr4	-	1727	6	ISM	ENSMUSG00000040972.9	ENSMUST00000039331.9	1979	10	-19	7225	-19	-7225	5prime_fragment	FALSE	canonical	3	57	junction_2	3.57770876399966	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTGAGACTGCAATTAG	NA	False	NA	NA	False	NA	NA	NA	139974114	139761381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_139762137_139764733_139764850_139794447_139794567_139834565_139834688_139884771_139884885_139973612
ENSMUSG00000040972.9_7	chr4	-	1146	6	ISM	ENSMUSG00000040972.9	ENSMUST00000039331.9	1979	10	209235	7	209235	-7	3prime_fragment	FALSE	canonical	3	64	junction_3	14.9184449591772	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCAATGTCTGGCCCTAT	NA	False	NA	-6	True	ATTAAA	-21	NA	139764860	139754163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139761661_139762137_139764733
ENSMUSG00000040978.5_0	chr11	+	2378	7	FSM	ENSMUSG00000040978.5	ENSMUST00000043285.5	2400	7	20	2	20	-2	multi-exon	FALSE	canonical	0	0	junction_1	1.25830573921179	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCAGCTGCCTCTCTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	8998613	9019354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_8999201_9002693_9002880_9004209_9004319_9006421_9006579_9009910_9010009_9011165_9011387_9018334
ENSMUSG00000040990.18_0	chrX	+	3422	18	FSM	ENSMUSG00000040990.18	ENSMUST00000112456.9	7317	18	-12	3907	-12	-5	multi-exon	FALSE	canonical	3	14	junction_4	4.015540744912	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTGAAAACAGGGGGGGAA	NA	False	NA	11	True	AATAAA	-16	NA	158410255	158757158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_158410688_158466539_158466698_158547007_158547132_158586715_158586820_158599572_158599703_158611369_158611576_158648320_158648397_158661117_158661213_158684671_158684780_158696984_158697037_158700231_158700313_158702753_158702914_158726192_158726279_158741208_158741319_158744760_158744890_158749209_158749479_158754857_158754922_158756120
ENSMUSG00000040990.18_1	chrX	+	3275	17	NIC	ENSMUSG00000040990.18	novel	7317	18	NA	NA	-18	-29	combination_of_known_junctions	FALSE	canonical	2	4	junction_14	5.29150262212918	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAATAAAAAATAAA	NA	False	NA	-13	True	ATTAAA	-3	NA	158410249	158757134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_158410688_158466539_158466698_158547007_158547132_158586715_158586820_158599572_158599703_158611369_158611576_158648320_158648397_158661117_158661213_158684671_158684780_158696984_158697037_158700231_158700313_158702753_158702914_158726192_158726279_158741208_158741319_158749209_158749479_158754857_158754922_158756120
ENSMUSG00000040990.18_4	chrX	+	1640	1	ISM	ENSMUSG00000040990.18	ENSMUST00000112456.9	7317	18	346904	2254	31158	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTTAAAATTGTTCGAT	NA	False	NA	NA	False	ATTAAA	-19	NA	158757171	158758811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_158757200_158758800
ENSMUSG00000040997.15_0	chr14	+	2566	7	FSM	ENSMUSG00000040997.15	ENSMUST00000180359.8	2508	7	31	-89	5	0	multi-exon	FALSE	canonical	3	19	junction_1	134.648616777151	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATGACACTGTTTAATA	NA	False	NA	11	True	AATAAA	-18	NA	54491675	54506621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_54491929_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
ENSMUSG00000040997.15_3	chr14	+	2365	7	FSM	ENSMUSG00000040997.15	ENSMUST00000041197.13	2401	7	34	2	-7	-2	multi-exon	FALSE	canonical	3	303	junction_1	38.1200588783502	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTGATGACACTGTTTAA	NA	False	NA	9	True	AATAAA	-16	NA	54496722	54506619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_54496777_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
ENSMUSG00000040998.19_0	chr3	-	4489	11	NIC	ENSMUSG00000040998.19	novel	4619	12	NA	NA	36	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	3.23882694814033	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGCCTCTTCCTTGGTTT	NA	False	NA	NA	False	AATAAA	-39	NA	132656016	132587506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_132590275_132591516_132591774_132596524_132596624_132597162_132597250_132610418_132610815_132612107_132612231_132612455_132612591_132614103_132614224_132615656_132615777_132653807_132653909_132655733
ENSMUSG00000040998.19_1	chr3	-	4581	12	FSM	ENSMUSG00000040998.19	ENSMUST00000042744.16	4619	12	35	3	35	-3	multi-exon	FALSE	canonical	1	4	junction_10	2.17802700922017	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGCCTCTTCCTTGGT	NA	False	NA	NA	False	AATAAA	-37	NA	132656017	132587508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_132590275_132591516_132591774_132596524_132596624_132597162_132597250_132610418_132610815_132612107_132612231_132612455_132612591_132614103_132614224_132615656_132615777_132623221_132623315_132653807_132653909_132655733
ENSMUSG00000040998.19_3	chr3	-	4570	13	FSM	ENSMUSG00000040998.19	ENSMUST00000042729.16	3601	13	-33	-936	-33	-2	multi-exon	FALSE	canonical	2	2	junction_10	2.98491578142872	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGCCTCTTCCTTGGTT	NA	False	NA	NA	False	AATAAA	-38	NA	132655954	132587507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_132590275_132591516_132591774_132596524_132596624_132597162_132597250_132610418_132610815_132612107_132612231_132612455_132612591_132614103_132614224_132615656_132615777_132623221_132623315_132637342_132637394_132653807_132653909_132655733
ENSMUSG00000040998.19_7	chr3	-	1558	1	ISM	ENSMUSG00000040998.19	ENSMUST00000042744.16	4619	12	66988	1	23056	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGCCTCTTCCTTGGTTT	NA	False	NA	NA	False	AATAAA	-39	NA	132589064	132587506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_132587500_132589100
ENSMUSG00000041000.9_0	chr4	+	3771	5	FSM	ENSMUSG00000041000.9	ENSMUST00000035667.9	3752	5	-22	3	-14	-3	multi-exon	TRUE	canonical	1	1	junction_4	1.78535710713571	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGGTGTACGTTCCATT	NA	False	NA	NA	False	ATTAAA	-14	NA	128777358	128805118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_128778371_128790612_128790709_128794338_128794596_128796265_128796382_128802828
ENSMUSG00000041020.15_0	chrX	+	3548	16	NIC	ENSMUSG00000041020.15	novel	3670	17	NA	NA	14	-9	combination_of_known_junctions	FALSE	canonical	1	49	junction_5	30.6328799386106	236	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAAGAATGCTGTGCCAT	NA	False	NA	-2	True	AATAAA	-9	NA	158197581	158281744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_158197889_158226918_158226997_158228930_158229095_158242373_158242480_158245109_158245221_158252958_158253090_158255820_158255946_158265073_158265373_158265955_158266083_158272272_158272496_158273675_158273781_158274763_158274821_158275319_158275408_158275893_158276081_158279030_158279306_158280579
ENSMUSG00000041020.15_1	chrX	+	3534	15	NIC	ENSMUSG00000041020.15	novel	3670	17	NA	NA	-25	-5	combination_of_known_splicesites	FALSE	canonical	1	15	junction_11	44.9721001946581	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGCTGTGCCATTGAC	NA	False	NA	2	True	AATAAA	-13	NA	158197542	158281748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_158197889_158226918_158226997_158228930_158229095_158242373_158242480_158245109_158245221_158252958_158253090_158255820_158255946_158265073_158265373_158265955_158266083_158272272_158272496_158273675_158273781_158275319_158275408_158275893_158276081_158279030_158279306_158280579
ENSMUSG00000041025.16_2	chr4	+	1866	1	ISM	ENSMUSG00000041025.16	ENSMUST00000040023.16	5227	11	86822	3	43791	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACACATGGTTTATGCTG	7516	False	NA	7	True	AATAAA	-13	NA	139345821	139347687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139345800_139347700
ENSMUSG00000041028.17_2	chr14	-	2496	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-40	732	-20	0	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	5635	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTATTGCTGTACTT	NA	False	NA	-18	True	AATAAA	-11	NA	36857249	36842780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
ENSMUSG00000041035.10_0	chr19	+	803	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	16	534	-4	210	multi-exon	FALSE	canonical	3	416	junction_3	22.5601418435257	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGACTGACTGCCCCTT	3708	False	NA	12	True	AGTAAA	-19	NA	45549069	45566192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
ENSMUSG00000041035.10_1	chr19	+	791	6	NNC	ENSMUSG00000041035.10	novel	1353	6	NA	NA	-3	210	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_3	159.454570332744	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGACTGACTGCCCCTT	3709	False	NA	12	True	AGTAAA	-19	NA	45549070	45566192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_45549147_45553349_45553431_45560323_45560438_45560843_45560978_45565431_45565535_45565909
ENSMUSG00000041035.10_4	chr19	+	1433	7	FSM	ENSMUSG00000041035.10	ENSMUST00000235805.2	687	7	-10	-736	-10	-8	multi-exon	FALSE	canonical	2	7	junction_1	211.143447815829	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAATTACAATGGTAGC	3702	False	NA	NA	False	ATTAAA	-11	NA	45549063	45566718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_45549147_45549425_45549524_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
ENSMUSG00000041037.9_0	chr7	+	6098	3	FSM	ENSMUSG00000041037.9	ENSMUST00000049020.9	6083	3	-17	2	-17	-2	multi-exon	FALSE	canonical	2	4	junction_1	2.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATGTGTGTCTTCTATT	NA	False	NA	13	True	AATAAA	-14	NA	24230096	24238023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24230330_24230808_24231341_24232690
ENSMUSG00000041037.9_4	chr7	+	4155	1	ISM	ENSMUSG00000041037.9	ENSMUST00000049020.9	6083	3	3755	2	3755	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATGTGTGTCTTCTATT	NA	False	NA	13	True	AATAAA	-14	NA	24233868	24238023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24233900_24238000
ENSMUSG00000041040.13_1	chr1	+	5545	8	FSM	ENSMUSG00000041040.13	ENSMUST00000036540.12	5532	8	-13	0	-13	0	multi-exon	FALSE	canonical	3	104	junction_1	7.88177955664784	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTTCTTTCTCTGTGTG	NA	False	NA	22	True	AATAAA	-15	NA	59952151	60024505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_59952912_59988211_59988364_59992093_59992184_59997480_59997595_60008112_60008257_60009644_60009871_60014041_60014163_60020567
ENSMUSG00000041040.13_8	chr1	+	2349	1	ISM	ENSMUSG00000041040.13	ENSMUST00000036540.12	5532	8	69992	0	3817	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTTCTTTCTCTGTGTG	NA	False	NA	22	True	AATAAA	-15	NA	60022156	60024505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_60022200_60024500
ENSMUSG00000041046.8_0	chr11	+	1226	3	FSM	ENSMUSG00000041046.8	ENSMUST00000045374.8	1233	3	4	3	4	0	multi-exon	FALSE	canonical	2	5	junction_1	3.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGTGGTATTTCTCATTT	NA	False	NA	11	True	ATTAAA	-11	NA	6608524	6627472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_6608628_6624762_6624896_6626482
ENSMUSG00000041057.11_1	chr17	+	3414	18	FSM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	30	6	30	-6	multi-exon	FALSE	canonical	3	1341	junction_7	117.232918130641	2650	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCAGCGCGTGTCTCGTGG	NA	False	NA	12	True	AATAAA	-12	NA	71923239	71966020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
ENSMUSG00000041058.16_0	chr4	-	2648	1	ISM	ENSMUSG00000041058.16	ENSMUST00000108246.9	6440	25	98032	11	67487	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACACTAAAAGGAAAAAACT	89	False	NA	NA	False	NA	NA	NA	19610961	19608313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_19608300_19611000
ENSMUSG00000041058.16_3	chr4	-	4017	25	FSM	ENSMUSG00000041058.16	ENSMUST00000108246.9	6440	25	1	2422	1	-1052	multi-exon	FALSE	canonical	3	155	junction_17	21.4877225927324	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAATTCTTTGTGCTCC	-29	True	NA	NA	False	NA	NA	NA	19708992	19610724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_19611814_19618284_19618358_19619155_19619253_19621927_19622033_19623101_19623223_19627632_19627774_19627871_19628006_19631045_19631206_19635253_19635343_19638604_19638677_19638774_19638851_19639951_19640081_19640194_19640280_19640360_19640416_19641733_19641909_19643365_19643462_19650115_19650441_19659562_19659748_19661965_19662033_19662121_19662260_19672418_19672544_19673155_19673295_19678344_19678436_19687790_19687887_19708838
ENSMUSG00000041064.15_0	chr9	+	3680	12	FSM	ENSMUSG00000041064.15	ENSMUST00000239405.2	3680	12	2	-2	2	0	multi-exon	FALSE	canonical	3	64	junction_6	26.5476337835245	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTGCCTCCTGCCTGG	NA	False	NA	24	True	AATAAA	-14	NA	65494488	65503246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
ENSMUSG00000041064.15_13	chr9	+	3872	2	NIC	ENSMUSG00000041064.15	novel	2450	4	NA	NA	0	704	intron_retention	FALSE	canonical	3	108	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAATAAAAATCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	65494486	65498478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_65497110_65497229
ENSMUSG00000041064.15_15	chr9	+	3399	13	NIC	ENSMUSG00000041064.15	novel	3395	13	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	35.6872020322256	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTGCCTCCTGCCTGG	NA	False	NA	24	True	AATAAA	-14	NA	65494484	65503246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_65494581_65494865_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
ENSMUSG00000041064.15_19	chr9	+	3366	13	NIC	ENSMUSG00000041064.15	novel	3309	13	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	35.8817502360183	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAACTGTGCCTCCTGCCTG	NA	False	NA	23	True	AATAAA	-13	NA	65494488	65503245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_65494581_65494893_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
ENSMUSG00000041064.15_30	chr9	+	2701	11	ISM	ENSMUSG00000041064.15	ENSMUST00000131483.3	3309	13	1575	3	1570	0	3prime_fragment	FALSE	canonical	3	64	junction_5	27.7805687486776	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTGCCTCCTGCCTGG	NA	False	NA	24	True	AATAAA	-14	NA	65496077	65503246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
ENSMUSG00000041075.9_0	chr1	+	4811	1	FSM	ENSMUSG00000041075.9	ENSMUST00000114246.4	4532	1	-287	8	-287	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATACAAAGTGAATGT	5067	False	NA	NA	False	AATAAA	-7	NA	59521295	59526106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_59521300_59526100
ENSMUSG00000041079.13_0	chr16	-	2000	5	FSM	ENSMUSG00000041079.13	ENSMUST00000039101.12	2009	5	3	6	3	-6	multi-exon	FALSE	canonical	3	39	junction_1	7.71362431027076	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATCTGTGCTTGTTAT	NA	False	NA	-10	True	AATAAA	-11	NA	87237458	87230300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_87231515_87233460_87233824_87233951_87234020_87234181_87234403_87237324
ENSMUSG00000041079.13_2	chr16	-	1389	2	ISM	ENSMUSG00000041079.13	ENSMUST00000039101.12	2009	5	3826	6	3814	-6	3prime_fragment	FALSE	canonical	3	39	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATCTGTGCTTGTTAT	NA	False	NA	-10	True	AATAAA	-11	NA	87233635	87230300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_87231515_87233460
ENSMUSG00000041084.9_0	chr3	-	1032	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	22	13	-6	-6	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	866	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAACATTTTAGAGTGTG	NA	False	NA	-12	True	AATAAA	-11	NA	130503071	130489573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
ENSMUSG00000041096.14_0	chrX	-	2707	7	FSM	ENSMUSG00000041096.14	ENSMUST00000044509.7	2696	7	-18	7	-18	-7	multi-exon	FALSE	canonical	3	155	junction_2	16.4189930669738	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAAGTGCCTCTTGGAG	NA	False	NA	-11	True	AATAAA	-10	NA	151125439	151119857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123377_151124535
ENSMUSG00000041096.14_5	chrX	-	2721	7	NIC	ENSMUSG00000041096.14	novel	2696	7	NA	NA	-15	-3	intron_retention	FALSE	non_canonical	0	0	junction_6	69.392602871872	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGCCTCTTGGAGTCTT	NA	False	NA	-7	True	AATAAA	-14	NA	151125436	151119853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123390_151124535
ENSMUSG00000041096.14_9	chrX	-	2711	7	NIC	ENSMUSG00000041096.14	novel	2696	7	NA	NA	-17	-5	intron_retention	FALSE	canonical	3	44	junction_2	53.7339123211155	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGTGCCTCTTGGAGTC	NA	False	NA	-9	True	AATAAA	-12	NA	151125438	151119855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_151120562_151121720_151122392_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123377_151124535
ENSMUSG00000041112.18_0	chr13	+	3679	22	FSM	ENSMUSG00000041112.18	ENSMUST00000072519.7	5464	22	-44	1829	-21	-1829	multi-exon	FALSE	canonical	2	20	junction_15	9.13863990039136	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGGGGAGCTGGTGTTTT	NA	False	NA	4	True	AATAAA	-14	NA	20274744	20790694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_20274942_20369523_20369675_20392303_20392345_20393308_20393382_20425742_20425794_20435173_20435344_20445726_20445763_20458689_20458790_20464981_20465134_20467081_20467161_20470889_20470941_20472060_20472184_20474531_20474664_20526537_20526643_20557251_20557361_20633639_20633777_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
ENSMUSG00000041112.18_11	chr13	+	2847	14	ISM	ENSMUSG00000041112.18	ENSMUST00000072519.7	5464	22	190193	1842	-2105	-1842	3prime_fragment	FALSE	canonical	2	20	junction_7	10.6131547267736	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAATGTGAAGAGTTGGG	NA	False	NA	-9	True	AATAAA	-1	NA	20464981	20790681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_20465134_20467081_20467161_20470889_20470941_20472060_20472184_20474531_20474664_20526537_20526643_20557251_20557361_20633639_20633777_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
ENSMUSG00000041112.18_14	chr13	+	2174	7	NIC	ENSMUSG00000041112.18	novel	3748	5	NA	NA	357	-1832	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	14.4308696896618	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGGGGAGCTGGTGT	NA	False	NA	1	True	AATAAA	-11	NA	20657252	20790691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_20657458_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
ENSMUSG00000041112.18_9	chr13	+	3491	21	ISM	ENSMUSG00000041112.18	ENSMUST00000072519.7	5464	22	94723	1832	135	-1832	3prime_fragment	FALSE	canonical	2	20	junction_14	9.21628992599517	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGGGGAGCTGGTGT	NA	False	NA	1	True	AATAAA	-11	NA	20369511	20790691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_20369675_20392303_20392345_20393308_20393382_20425742_20425794_20435173_20435344_20445726_20445763_20458689_20458790_20464981_20465134_20467081_20467161_20470889_20470941_20472060_20472184_20474531_20474664_20526537_20526643_20557251_20557361_20633639_20633777_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
ENSMUSG00000041115.17_0	chrX	+	4814	14	FSM	ENSMUSG00000041115.17	ENSMUST00000112604.8	5967	14	-100	1253	-96	-1252	multi-exon	FALSE	canonical	1	1	junction_2	2.94726831702585	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATACACACTCAGCAGTGT	NA	False	NA	NA	False	NA	NA	NA	150927167	151006979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_150928176_150949929_150949960_150985903_150986166_150986927_150987330_150991765_150992662_150994205_150994368_150995017_150995141_150996282_150996450_150998496_150998637_150999336_150999463_151001872_151001973_151002727_151002890_151004642_151004817_151005917
ENSMUSG00000041117.9_9	chr7	+	1086	1	FSM	ENSMUSG00000041117.9	ENSMUST00000094805.5	4809	1	3722	1	3722	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTGTTTCCGAGGTGG	8398	False	NA	19	True	AATAAA	-16	NA	16730354	16731440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16730400_16731400
ENSMUSG00000041119.13_0	chr17	+	1908	19	FSM	ENSMUSG00000041119.13	ENSMUST00000047168.13	2089	19	25	156	-19	-1	multi-exon	FALSE	canonical	3	53	junction_18	8.45777456647338	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATGGGTCTGTATTTTT	NA	False	NA	NA	False	AATATA	-10	NA	31605208	31695128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_31605331_31633074_31633146_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662883_31667340_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680702_31685328_31685443_31688767_31688873_31689654_31689784_31690732_31690829_31692131_31692254_31694898
ENSMUSG00000041119.13_1	chr17	+	1947	19	NIC	ENSMUSG00000041119.13	novel	2089	19	NA	NA	14	-1	combination_of_known_junctions	FALSE	canonical	2	7	junction_17	17.2212365309324	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATGGGTCTGTATTTTT	NA	False	NA	NA	False	AATATA	-10	NA	31605197	31695128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_31605331_31633074_31633146_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662883_31667340_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680702_31685328_31685443_31688767_31688873_31689654_31689784_31690732_31690857_31692131_31692254_31694898
ENSMUSG00000041119.13_2	chr17	+	1902	19	FSM	ENSMUSG00000041119.13	ENSMUST00000127929.8	1891	19	-18	7	-18	-3	multi-exon	FALSE	canonical	3	20	junction_18	14.1770114735436	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAATGGGTCTGTATTT	NA	False	NA	NA	False	AATATA	-8	NA	31605209	31695126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_31605331_31633074_31633146_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662883_31667340_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680702_31685328_31685443_31688767_31688873_31689654_31689784_31690732_31690829_31692131_31692254_31694901
ENSMUSG00000041124.12_0	chr9	+	2778	3	FSM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	15	7	8	2	multi-exon	FALSE	canonical	3	88	junction_1	13	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAATTTTCCTGTCTGA	10	True	NA	7	True	ATTAAA	-15	NA	4376576	4386863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_4376624_4383536_4384143_4384738
ENSMUSG00000041124.12_5	chr9	+	2731	2	FSM	ENSMUSG00000041124.12	ENSMUST00000047173.10	2731	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAAATTTTCCTGTCT	13	False	NA	5	True	ATTAAA	-13	NA	4383534	4386861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_4384143_4384738
ENSMUSG00000041124.12_6	chr9	+	1741	1	ISM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	8561	7	1588	2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAATTTTCCTGTCTGA	1601	False	NA	7	True	ATTAAA	-15	NA	4385122	4386863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_4385100_4386900
ENSMUSG00000041126.17_0	chr11	-	685	5	FSM	ENSMUSG00000041126.17	ENSMUST00000109737.9	1633	5	35	913	35	-4	multi-exon	FALSE	canonical	3	3133	junction_4	74.0485482639599	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTACTGTGTCTCAGTA	NA	False	NA	-7	True	GATAAA	-12	NA	6394408	6378141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6378433_6379095_6379226_6383723_6383838_6389375_6389454_6394336
ENSMUSG00000041126.17_4	chr11	-	574	4	FSM	ENSMUSG00000041126.17	ENSMUST00000093346.6	519	4	-59	4	32	-4	multi-exon	FALSE	canonical	3	328	junction_2	1363.86957669061	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTACTGTGTCTCAGTA	NA	False	NA	-7	True	GATAAA	-12	NA	6394411	6378141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6378433_6379095_6379226_6389375_6389454_6394336
ENSMUSG00000041130.11_0	chr17	+	3320	12	FSM	ENSMUSG00000041130.11	ENSMUST00000234956.2	3352	12	31	1	-29	-1	multi-exon	FALSE	canonical	3	262	junction_10	128.150802179204	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATAGCTGGTGTTCTGAGT	1207	False	NA	11	True	AATAAA	-19	NA	24888691	24900989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24897027_24897569_24897688_24898010_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854_24900006_24900082
ENSMUSG00000041130.11_2	chr17	+	3307	12	FSM	ENSMUSG00000041130.11	ENSMUST00000047179.7	3283	12	-25	1	-25	-1	multi-exon	FALSE	canonical	3	229	junction_6	142.469309439723	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATAGCTGGTGTTCTGAGT	1211	False	NA	11	True	AATAAA	-19	NA	24888695	24900989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24897027_24897569_24897679_24898010_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854_24900006_24900082
ENSMUSG00000041130.11_29	chr17	+	3858	11	NIC	ENSMUSG00000041130.11	novel	3352	12	NA	NA	-24	-1	intron_retention	FALSE	canonical	3	262	junction_9	134.256470979987	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATAGCTGGTGTTCTGAGT	1212	False	NA	11	True	AATAAA	-19	NA	24888696	24900989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24897688_24898010_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854_24900006_24900082
ENSMUSG00000041130.11_3	chr17	+	4191	10	NIC	ENSMUSG00000041130.11	novel	3352	12	NA	NA	21	-6	intron_retention	FALSE	canonical	3	262	junction_8	119.890485006366	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCACATAGCTGGTGTTC	1197	False	NA	6	True	AATAAA	-14	NA	24888681	24900984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854_24900006_24900082
ENSMUSG00000041132.12_0	chr5	-	3207	4	FSM	ENSMUSG00000041132.12	ENSMUST00000202031.4	1864	4	-1340	-3	-1340	0	multi-exon	FALSE	canonical	2	4	junction_1	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGGGTTTTCCATTGAA	NA	False	NA	0	True	ATTAAA	-22	NA	150501796	150495108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_150496458_150497464_150497542_150499714_150499804_150500104
ENSMUSG00000041132.12_2	chr5	-	2755	1	NIC	ENSMUSG00000041132.12	novel	1905	5	NA	NA	12	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAGGATATGTCTTGT	4575	False	NA	NA	False	AATAAA	-10	NA	150517978	150515223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_150515200_150518000
ENSMUSG00000041132.12_3	chr5	-	1311	3	FSM	ENSMUSG00000041132.12	ENSMUST00000200840.2	1371	3	46	14	18	-11	multi-exon	FALSE	canonical	3	10	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTTTTAAAAATAGGATAT	4606	False	NA	NA	False	AATAAA	-3	NA	150517947	150515230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_150516025_150516604_150516903_150517728
ENSMUSG00000041132.12_5	chr5	-	1898	5	FSM	ENSMUSG00000041132.12	ENSMUST00000016279.11	1905	5	7	0	7	0	multi-exon	FALSE	canonical	2	3	junction_4	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGGGTTTTCCATTGAA	4570	False	NA	0	True	ATTAAA	-22	NA	150517983	150495108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_150496458_150497464_150497542_150499714_150499804_150500104_150500233_150517728
ENSMUSG00000041133.12_1	chrX	+	3916	25	FSM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	48	727	48	-727	multi-exon	TRUE	canonical	3	535	junction_3	101.202320735358	1120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTAATCTAAATT	NA	False	NA	14	True	AATAAA	-18	NA	150799471	150844963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
ENSMUSG00000041133.12_3	chrX	+	3603	23	NIC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	59	-727	combination_of_known_junctions	FALSE	canonical	3	167	junction_1	147.492463737996	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTAATCTAAATT	NA	False	NA	14	True	AATAAA	-18	NA	150799482	150844963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
ENSMUSG00000041135.16_2	chr4	-	1988	11	FSM	ENSMUSG00000041135.16	ENSMUST00000037035.12	2692	11	61	643	57	-635	multi-exon	TRUE	canonical	3	70	junction_4	17.1373860317144	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTGTGTAGTTCAGTTTT	32	False	NA	-10	True	AGTAAA	-12	NA	16163586	16123375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_16123892_16124424_16124587_16127620_16127715_16129022_16129110_16132776_16132863_16138073_16138236_16139204_16139255_16151916_16152075_16155034_16155191_16158276_16158431_16163223
ENSMUSG00000041135.16_4	chr4	-	2096	12	NNC	ENSMUSG00000041135.16	novel	2804	12	NA	NA	26	-635	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_10	29.5707583951801	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTGTGTAGTTCAGTTTT	1	True	NA	-10	True	AGTAAA	-12	NA	16163617	16123375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_16123892_16124424_16124587_16127620_16127715_16129022_16129110_16132776_16132863_16138073_16138236_16139204_16139255_16151916_16152075_16155034_16155191_16157571_16157649_16158276_16158431_16163223
ENSMUSG00000041143.17_1	chr4	+	3020	17	NIC	ENSMUSG00000041143.17	novel	3318	17	NA	NA	-3	-3	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	17.3561048337465	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCTAAGGGTTCTTCTT	NA	False	NA	21	True	AATAAA	-12	NA	138700212	138786475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_138700301_138704518_138704634_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
ENSMUSG00000041143.17_8	chr4	+	3008	17	FSM	ENSMUSG00000041143.17	ENSMUST00000050949.9	3318	17	307	3	303	-3	multi-exon	FALSE	canonical	3	56	junction_1	8.00780868902348	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCTAAGGGTTCTTCTT	NA	False	NA	21	True	AATAAA	-12	NA	138700522	138786475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_138700599_138704518_138704634_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
ENSMUSG00000041147.11_1	chr5	+	2265	3	ISM	ENSMUSG00000041147.11	ENSMUST00000202975.4	2534	8	-2	5614	0	-1040	intron_retention	FALSE	canonical	3	58	junction_1	9.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAACATTTTCTTGCA	370	False	NA	NA	False	ATTAAA	-9	NA	150446094	150454827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150446362_150446639_150446745_150452934
ENSMUSG00000041147.11_16	chr5	+	10414	26	NIC	ENSMUSG00000041147.11	novel	10724	27	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_11	37.9278051039076	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTACTGGCTAAGTATGG	390	False	NA	12	True	AATAAA	-21	NA	150446114	150493211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460603_150462113_150466923_150471405_150471476_150471953_150472301_150474296_150474479_150475671_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
ENSMUSG00000041147.11_24	chr5	+	5374	17	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	18980	1	-10742	0	3prime_fragment	FALSE	canonical	3	70	junction_2	23.6801604724292	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTACTGGCTAAGTATGG	7347	False	NA	12	True	AATAAA	-21	NA	150465088	150493211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150466923_150468359_150468456_150471405_150471476_150471953_150472301_150474296_150474479_150475671_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
ENSMUSG00000041147.11_26	chr5	+	5225	16	NIC	ENSMUSG00000041147.11	novel	10724	27	NA	NA	-10689	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	31.4525392015052	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTACTGGCTAAGTATGG	7400	False	NA	12	True	AATAAA	-21	NA	150465141	150493211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_150466923_150471405_150471476_150471953_150472301_150474296_150474479_150475671_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
ENSMUSG00000041147.11_3	chr5	+	10529	27	FSM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	-14	2	0	-1	multi-exon	TRUE	canonical	3	58	junction_1	34.4104188157733	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATTACTGGCTAAGTATG	370	False	NA	11	True	AATAAA	-20	NA	150446094	150493210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460603_150462113_150466923_150468359_150468456_150471405_150471476_150471953_150472301_150474296_150474479_150475671_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
ENSMUSG00000041147.11_38	chr5	+	3231	14	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	25988	1	-3734	0	3prime_fragment	FALSE	canonical	3	110	junction_3	14.8407722410277	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTACTGGCTAAGTATGG	NA	False	NA	12	True	AATAAA	-21	NA	150472096	150493211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150472301_150474296_150474479_150475671_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
ENSMUSG00000041147.11_40	chr5	+	2735	12	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	29673	1	-49	0	3prime_fragment	FALSE	canonical	3	110	junction_1	14.6411623979668	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTACTGGCTAAGTATGG	NA	False	NA	12	True	AATAAA	-21	NA	150475781	150493211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
ENSMUSG00000041147.11_41	chr5	+	2265	10	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	31732	1	500	0	3prime_fragment	FALSE	canonical	3	128	junction_6	11.7672909287766	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTACTGGCTAAGTATGG	NA	False	NA	12	True	AATAAA	-21	NA	150477840	150493211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
ENSMUSG00000041147.11_43	chr5	+	2131	9	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	34215	3	-107	-2	3prime_fragment	FALSE	canonical	3	128	junction_5	12.4799839743487	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGATTACTGGCTAAGTAT	NA	False	NA	10	True	AATAAA	-19	NA	150480323	150493209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
ENSMUSG00000041147.11_6	chr5	+	10724	27	FSM	ENSMUSG00000041147.11	ENSMUST00000044620.11	10724	27	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	37.750504522668	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTACTGGCTAAGTATGG	370	False	NA	12	True	AATAAA	-21	NA	150446094	150493211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_150446556_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460603_150462113_150466923_150468359_150468456_150471405_150471476_150471953_150472301_150474296_150474479_150475671_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
ENSMUSG00000041153.10_0	chr4	-	2508	6	FSM	ENSMUSG00000041153.10	ENSMUST00000037198.10	2658	6	38	112	-29	-6	multi-exon	FALSE	canonical	3	76	junction_2	19.0305018325844	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACTTACCCTTGTGTGA	-5	True	NA	-10	True	AATAAA	-11	NA	16013850	15997232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_15999001_16001929_16002022_16005356_16005549_16006356_16006494_16008600_16008756_16013686
ENSMUSG00000041153.10_1	chr4	-	2480	6	NIC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	-30	-6	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	32.8852550545073	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACTTACCCTTGTGTGA	-6	True	NA	-10	True	AATAAA	-11	NA	16013851	15997232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_15999001_16001929_16002022_16005385_16005549_16006356_16006494_16008600_16008756_16013686
ENSMUSG00000041153.10_2	chr4	-	1999	6	NNC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	-30	-687	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	43.3912433562349	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCAGTGTATTGGCTTG	-6	True	NA	-4	True	ATTAAA	-17	NA	16013851	15997913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_15999001_16001929_16002022_16005356_16005549_16006356_16006494_16008600_16008756_16013515
ENSMUSG00000041161.9_0	chr4	-	1684	8	FSM	ENSMUSG00000041161.9	ENSMUST00000097830.4	1668	8	-22	6	-22	-6	multi-exon	TRUE	canonical	3	21	junction_7	2.1380899352994	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATGCCCTCTGTTTCTCT	NA	False	NA	-6	True	NA	NA	NA	138641278	138622695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_138623226_138624026_138624209_138624867_138624965_138625317_138625450_138629162_138629286_138632467_138632581_138636792_138636942_138640920
ENSMUSG00000041164.16_1	chr11	+	4025	20	FSM	ENSMUSG00000041164.16	ENSMUST00000109787.8	4116	20	6	85	6	-1	multi-exon	TRUE	canonical	3	65	junction_1	72.0482679083075	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGAGTCCTTCCTTT	4629	False	NA	19	True	ATTAAA	-19	NA	6339079	6356073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_6339141_6345124_6345289_6345567_6345679_6345757_6345873_6346231_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
ENSMUSG00000041164.16_16	chr11	+	4015	20	NIC	ENSMUSG00000041164.16	novel	4199	20	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	118	junction_4	67.0811721462118	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTGAGTCCTTCCTTTG	4917	False	NA	20	True	ATTAAA	-20	NA	6339367	6356074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_6339514_6345124_6345289_6345567_6345679_6345757_6345873_6346327_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
ENSMUSG00000041164.16_2	chr11	+	3917	20	NIC	ENSMUSG00000041164.16	novel	4116	20	NA	NA	18	-1	combination_of_known_junctions	FALSE	canonical	3	65	junction_1	82.0795843784869	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGAGTCCTTCCTTT	4641	False	NA	19	True	ATTAAA	-19	NA	6339091	6356073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_6339141_6345124_6345289_6345567_6345679_6345757_6345873_6346327_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
ENSMUSG00000041164.16_3	chr11	+	4110	20	FSM	ENSMUSG00000041164.16	ENSMUST00000012612.11	4199	20	4	85	4	-1	multi-exon	FALSE	canonical	3	175	junction_1	53.7737643143183	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGAGTCCTTCCTTT	4917	False	NA	19	True	ATTAAA	-19	NA	6339367	6356073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_6339514_6345124_6345289_6345567_6345679_6345757_6345873_6346231_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
ENSMUSG00000041164.16_66	chr11	+	3500	16	ISM	ENSMUSG00000041164.16	ENSMUST00000102914.10	3806	19	1117	2	-424	-2	3prime_fragment	FALSE	canonical	3	245	junction_5	34.4198908901363	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGCTGAGTCCTTCCTT	NA	False	NA	18	True	ATTAAA	-18	NA	6346304	6356072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
ENSMUSG00000041168.11_0	chr17	-	2945	18	FSM	ENSMUSG00000041168.11	ENSMUST00000047226.10	2951	18	2	4	2	-4	multi-exon	FALSE	canonical	3	584	junction_15	77.1963747647298	1509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCCTAAGCCTGAGTC	1573	False	NA	-16	True	AATAAA	-13	NA	56933885	56921300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56921564_56921635_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56925457_56926171_56926393_56926985_56927070_56927222_56927353_56927513_56927576_56928923_56929159_56929433_56929554_56930136_56930226_56933480
ENSMUSG00000041168.11_2	chr17	-	4253	16	NIC	ENSMUSG00000041168.11	novel	2951	18	NA	NA	2	-4	intron_retention	FALSE	canonical	3	584	junction_13	78.4682242836055	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCCTAAGCCTGAGTC	1573	False	NA	-16	True	AATAAA	-13	NA	56933885	56921300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_56921564_56921635_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56927070_56927222_56927353_56927513_56927576_56928923_56929159_56929433_56929554_56930136_56930226_56933480
ENSMUSG00000041180.14_0	chr19	+	4710	21	FSM	ENSMUSG00000041180.14	ENSMUST00000047247.12	4731	21	10	11	1	-8	multi-exon	FALSE	canonical	3	10	junction_10	6.40683229060977	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAGTCAGGCTTCAGTTC	NA	False	NA	1	True	ATTAAA	-8	NA	36532078	36598524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_36532316_36546772_36546903_36561335_36561475_36562295_36562399_36562843_36562934_36564765_36564831_36572608_36572655_36574476_36574587_36576286_36576436_36576995_36577120_36578831_36578929_36581649_36581758_36582567_36582701_36583785_36583875_36586664_36586824_36588763_36588839_36589543_36589632_36589716_36589824_36591747_36591864_36592899_36593044_36596123
ENSMUSG00000041180.14_1	chr19	+	4741	21	FSM	ENSMUSG00000041180.14	ENSMUST00000169036.9	3842	21	-17	-882	12	-8	multi-exon	FALSE	canonical	3	14	junction_10	5.91840350094516	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAGTCAGGCTTCAGTTC	NA	False	NA	1	True	ATTAAA	-8	NA	36532050	36598524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_36532316_36546772_36546903_36561335_36561475_36562295_36562399_36562843_36562934_36564765_36564831_36572608_36572655_36574476_36574587_36576286_36576436_36576995_36577120_36578828_36578929_36581649_36581758_36582567_36582701_36583785_36583875_36586664_36586824_36588763_36588839_36589543_36589632_36589716_36589824_36591747_36591864_36592899_36593044_36596123
ENSMUSG00000041180.14_13	chr19	+	3092	7	ISM	ENSMUSG00000041180.14	ENSMUST00000177381.8	1679	16	23776	-2282	4098	-6	3prime_fragment	FALSE	canonical	3	21	junction_6	4.48763733927875	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCAGGCTTCAGTTCAT	NA	False	NA	3	True	ATTAAA	-10	NA	36586664	36598526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_36586824_36588763_36588839_36589543_36589632_36589716_36589824_36591747_36591864_36592899_36593044_36596123
ENSMUSG00000041180.14_15	chr19	+	4488	19	NIC	ENSMUSG00000041180.14	novel	4731	21	NA	NA	11	-10	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	9.81636954841815	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATCAGTCAGGCTTCAGT	NA	False	NA	-1	True	ATTAAA	-6	NA	36532049	36598522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_36532316_36546772_36546903_36562295_36562399_36562843_36562934_36564765_36564831_36572608_36572655_36576286_36576436_36576995_36577120_36578831_36578929_36581649_36581758_36582567_36582701_36583785_36583875_36586664_36586824_36588763_36588839_36589543_36589632_36589716_36589824_36591747_36591864_36592899_36593044_36596123
ENSMUSG00000041180.14_3	chr19	+	4588	19	NIC	ENSMUSG00000041180.14	novel	3842	21	NA	NA	11	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	8.64402312597954	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCAGGCTTCAGTTCAT	NA	False	NA	3	True	ATTAAA	-10	NA	36532049	36598526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_36532316_36546772_36546903_36561335_36561475_36562295_36562399_36562843_36562934_36564765_36564831_36576286_36576436_36576995_36577120_36578828_36578929_36581649_36581758_36582567_36582701_36583785_36583875_36586664_36586824_36588763_36588839_36589543_36589632_36589716_36589824_36591747_36591864_36592899_36593044_36596123
ENSMUSG00000041187.17_0	chr7	+	3221	19	FSM	ENSMUSG00000041187.17	ENSMUST00000168093.9	3251	19	15	15	15	-15	multi-exon	FALSE	canonical	2	2	junction_2	2.9465401347058	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACAAATGAAGCACCCAC	NA	False	NA	NA	False	AATAAA	-18	NA	16576841	16604282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16576959_16577406_16577789_16579743_16579883_16581525_16581658_16582649_16582805_16582905_16583132_16583949_16584028_16584118_16584273_16587179_16587298_16587875_16587954_16589619_16589879_16590184_16590238_16590750_16590824_16591675_16591783_16592303_16592466_16597865_16597965_16599611_16599880_16603412_16603499_16603747
ENSMUSG00000041187.17_1	chr7	+	3655	18	FSM	ENSMUSG00000041187.17	ENSMUST00000086104.6	3628	18	-134	107	29	-15	multi-exon	FALSE	canonical	2	2	junction_1	3.00518582928113	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACAAATGAAGCACCCAC	NA	False	NA	NA	False	AATAAA	-18	NA	16576855	16604282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16577789_16579743_16579883_16581525_16581658_16582649_16582805_16582905_16583132_16583949_16584028_16584118_16584273_16587179_16587298_16587875_16587954_16589619_16589879_16590184_16590238_16590750_16590824_16591675_16591783_16592303_16592466_16597865_16597965_16599611_16599880_16603412_16603499_16603747
ENSMUSG00000041187.17_5	chr7	+	2598	3	NIC	ENSMUSG00000041187.17	novel	1115	4	NA	NA	631	-15	intron_retention	FALSE	canonical	3	4	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACAAATGAAGCACCCAC	NA	False	NA	NA	False	AATAAA	-18	NA	16597902	16604282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_16599880_16603412_16603499_16603747
ENSMUSG00000041189.10_1	chr11	-	2130	11	FSM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	14	11	14	-11	multi-exon	TRUE	canonical	2	3	junction_10	6.56429737291052	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGATTAATCATTTTTG	17	True	NA	-13	True	ATTAAA	-13	NA	69686755	69674872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69675588_69675875_69676024_69676532_69676706_69677706_69677931_69683524_69683735_69684290_69684439_69684709_69684819_69684975_69685086_69685794_69685840_69686420_69686561_69686647
ENSMUSG00000041189.10_2	chr11	-	805	2	ISM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	10810	5	8687	-5	3prime_fragment	FALSE	canonical	3	28	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATCATTTTTGTCTATT	9592	False	NA	-7	True	ATTAAA	-19	NA	69675959	69674866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69675588_69675875
ENSMUSG00000041189.10_3	chr11	-	2833	7	ISM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	843	13	805	-13	intron_retention	FALSE	canonical	2	6	junction_6	6.60176744011279	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATGATTAATCATTTT	9964	False	NA	-15	True	ATTAAA	-11	NA	69685926	69674874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69675588_69675875_69676024_69676532_69676706_69677706_69677931_69683524_69683735_69684290_69684439_69684709
ENSMUSG00000041193.16_1	chr4	-	2113	6	FSM	ENSMUSG00000041193.16	ENSMUST00000030524.14	2131	6	9	9	9	-9	multi-exon	FALSE	canonical	3	70	junction_2	8.52291030106501	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACCCTGAATTCACATGT	NA	False	NA	-14	True	AATAAA	-15	NA	138590771	138526568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_138527973_138528662_138528770_138531817_138531963_138533495_138533546_138546310_138546427_138590480
ENSMUSG00000041193.16_7	chr4	-	1960	5	FSM	ENSMUSG00000041193.16	ENSMUST00000102512.11	1976	5	2	14	2	-9	multi-exon	FALSE	canonical	3	70	junction_2	9.4339811320566	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACCCTGAATTCACATGT	NA	False	NA	-14	True	AATAAA	-15	NA	138546564	138526568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_138527973_138528662_138528770_138531817_138531963_138533495_138533546_138546310
ENSMUSG00000041193.16_8	chr4	-	2060	6	NIC	ENSMUSG00000041193.16	novel	2131	6	NA	NA	148	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	34.5160832076874	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTGAATTCACATGTTTT	NA	False	NA	-11	True	AATAAA	-18	NA	138590612	138526565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_138527973_138528662_138528770_138531817_138531963_138533392_138533546_138546310_138546427_138590480
ENSMUSG00000041193.16_9	chr4	-	1967	5	NIC	ENSMUSG00000041193.16	novel	2131	6	NA	NA	-10	-9	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	34.679785178112	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACCCTGAATTCACATGT	NA	False	NA	-14	True	AATAAA	-15	NA	138590770	138526568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_138527973_138528662_138528770_138533495_138533546_138546310_138546427_138590480
ENSMUSG00000041199.4_1	chr17	+	1710	6	FSM	ENSMUSG00000041199.4	ENSMUST00000047273.3	1745	6	27	8	12	-2	multi-exon	FALSE	canonical	3	41	junction_1	16.0299719276111	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTGAGAGTGACCATGA	NA	False	NA	16	True	AATAAA	-13	NA	25946717	25950430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25946822_25947176_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
ENSMUSG00000041199.4_2	chr17	+	1520	5	FSM	ENSMUSG00000041199.4	ENSMUST00000235645.2	1531	5	13	-2	13	-2	multi-exon	FALSE	canonical	3	21	junction_1	24.712092181764	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTGAGAGTGACCATGA	NA	False	NA	16	True	AATAAA	-13	NA	25946718	25950430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25946822_25947496_25947621_25947799_25947903_25948041_25948144_25949342
ENSMUSG00000041199.4_3	chr17	+	1736	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237785.2	1761	6	23	2	8	-2	multi-exon	FALSE	canonical	3	14	junction_1	25.198412648419	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTGAGAGTGACCATGA	NA	False	NA	16	True	AATAAA	-13	NA	25946713	25950430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25946822_25947154_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
ENSMUSG00000041199.4_4	chr17	+	1852	5	NIC	ENSMUSG00000041199.4	novel	1745	6	NA	NA	4	1	intron_retention	FALSE	canonical	3	41	junction_1	16.0682139642214	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAGAGTGACCATGAGCA	NA	False	NA	19	True	AATAAA	-16	NA	25946709	25950433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25946822_25947176_25947621_25947799_25947903_25948041_25948144_25949342
ENSMUSG00000041199.4_5	chr17	+	1284	3	ISM	ENSMUSG00000041199.4	ENSMUST00000235645.2	1531	5	1101	0	1101	0	3prime_fragment	FALSE	canonical	3	76	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATCTTGAGAGTGACCAT	NA	False	NA	14	True	AATAAA	-11	NA	25947806	25950428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_25947903_25948041_25948144_25949342
ENSMUSG00000041199.4_6	chr17	+	2166	4	NIC	ENSMUSG00000041199.4	novel	1531	5	NA	NA	42	-2	intron_retention	FALSE	canonical	3	76	junction_3	1.4142135623731	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTGAGAGTGACCATGA	NA	False	NA	16	True	AATAAA	-13	NA	25946747	25950430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25947621_25947799_25947903_25948041_25948144_25949342
ENSMUSG00000041199.4_9	chr17	+	1643	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237183.2	1743	6	92	8	30	-2	multi-exon	FALSE	canonical	2	5	junction_1	28.5096474899287	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTGAGAGTGACCATGA	NA	False	NA	16	True	AATAAA	-13	NA	25946735	25950430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25946822_25947225_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
ENSMUSG00000041203.10_0	chr8	+	845	3	FSM	ENSMUSG00000041203.10	ENSMUST00000047281.10	902	3	56	1	56	-1	multi-exon	FALSE	canonical	3	920	junction_1	163	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGTGCTTGGTTTATCT	NA	False	NA	20	True	AGTAAA	-20	NA	85753507	85756914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85753864_85756167_85756246_85756503
ENSMUSG00000041203.10_2	chr8	+	2384	2	ISM	ENSMUSG00000041203.10	ENSMUST00000047281.10	902	3	821	1	821	-1	3prime_fragment	FALSE	canonical	3	1246	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGTGCTTGGTTTATCT	NA	False	NA	20	True	AGTAAA	-20	NA	85754272	85756914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_85756246_85756503
ENSMUSG00000041205.9_1	chr16	-	3233	3	FSM	ENSMUSG00000041205.9	ENSMUST00000040880.9	3280	3	34	13	34	-13	multi-exon	FALSE	canonical	3	61	junction_2	5	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTGAGAAGAGTATTCAA	NA	False	NA	NA	False	AATAAA	-16	NA	20060074	20052065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20054790_20055336_20055455_20059683
ENSMUSG00000041205.9_2	chr16	-	3201	4	NNC	ENSMUSG00000041205.9	novel	3280	3	NA	NA	33	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.3793987620328	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTGAGAAGAGTATTCAA	NA	False	NA	NA	False	AATAAA	-16	NA	20060075	20052065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_20053635_20053667_20054790_20055336_20055455_20059683
ENSMUSG00000041215.17_1	chr16	+	6079	31	FSM	ENSMUSG00000041215.17	ENSMUST00000115560.4	6112	31	27	6	1	-6	multi-exon	FALSE	canonical	3	106	junction_10	25.0014444027185	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGTTTTCTGAGCTGGA	NA	False	NA	10	True	AATAAA	-16	NA	19959843	20051317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_19959986_19969191_19969311_19971658_19971757_19972886_19972980_19975636_19975883_19977886_19978003_19980725_19980888_19989940_19990053_19993244_19993290_19998250_19998426_20005000_20005241_20008088_20008248_20009135_20009240_20011908_20012017_20012393_20012577_20022404_20022664_20024833_20024996_20026373_20026544_20027168_20027328_20028781_20028959_20030318_20030500_20032016_20032146_20033140_20033243_20037133_20037237_20038367_20038442_20040423_20040504_20041489_20041692_20046462_20046690_20047446_20047522_20048247_20048322_20049514
ENSMUSG00000041215.17_2	chr16	+	5958	30	NIC	ENSMUSG00000041215.17	novel	5997	30	NA	NA	-6	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	44.8334744143461	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGTTTTCTGAGCTGGA	NA	False	NA	10	True	AATAAA	-16	NA	19959836	20051317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_19959986_19971658_19971757_19972886_19972980_19975636_19975874_19977886_19978003_19980725_19980888_19989940_19990053_19993244_19993290_19998250_19998426_20005000_20005241_20008088_20008248_20009135_20009240_20011908_20012017_20012393_20012577_20022404_20022664_20024833_20024996_20026373_20026544_20027168_20027328_20028781_20028959_20030318_20030500_20032016_20032146_20033140_20033243_20037133_20037237_20038367_20038442_20040423_20040504_20041489_20041692_20046462_20046690_20047446_20047522_20048247_20048322_20049514
ENSMUSG00000041215.17_6	chr16	+	6071	31	NIC	ENSMUSG00000041215.17	novel	6112	31	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	37.8088173137784	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGTTTTCTGAGCTGGA	NA	False	NA	10	True	AATAAA	-16	NA	19959842	20051317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_19959986_19969191_19969311_19971658_19971757_19972886_19972980_19975636_19975874_19977886_19978003_19980725_19980888_19989940_19990053_19993244_19993290_19998250_19998426_20005000_20005241_20008088_20008248_20009135_20009240_20011908_20012017_20012393_20012577_20022404_20022664_20024833_20024996_20026373_20026544_20027168_20027328_20028781_20028959_20030318_20030500_20032016_20032146_20033140_20033243_20037133_20037237_20038367_20038442_20040423_20040504_20041489_20041692_20046462_20046690_20047446_20047522_20048247_20048322_20049514
ENSMUSG00000041215.17_79	chr16	+	178	1	ISM	ENSMUSG00000041215.17	ENSMUST00000232172.2	5671	12	49886	0	-1987	0	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20009728	20009906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_20009700_20009900
ENSMUSG00000041215.17_8	chr16	+	5970	30	FSM	ENSMUSG00000041215.17	ENSMUST00000090052.11	5997	30	21	6	-9	-6	multi-exon	FALSE	canonical	3	35	junction_1	34.7469534332064	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGTTTTCTGAGCTGGA	NA	False	NA	10	True	AATAAA	-16	NA	19959833	20051317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_19959986_19971658_19971757_19972886_19972980_19975636_19975883_19977886_19978003_19980725_19980888_19989940_19990053_19993244_19993290_19998250_19998426_20005000_20005241_20008088_20008248_20009135_20009240_20011908_20012017_20012393_20012577_20022404_20022664_20024833_20024996_20026373_20026544_20027168_20027328_20028781_20028959_20030318_20030500_20032016_20032146_20033140_20033243_20037133_20037237_20038367_20038442_20040423_20040504_20041489_20041692_20046462_20046690_20047446_20047522_20048247_20048322_20049514
ENSMUSG00000041215.17_97	chr16	+	1544	1	ISM	ENSMUSG00000041215.17	ENSMUST00000090052.11	5997	30	89960	7	2451	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGGTTTTCTGAGCTGG	NA	False	NA	9	True	AATAAA	-15	NA	20049772	20051316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_20049800_20051300
ENSMUSG00000041219.15_0	chr2	-	5044	12	FSM	ENSMUSG00000041219.15	ENSMUST00000102545.8	4958	12	-36	-50	-31	-1	multi-exon	FALSE	canonical	3	279	junction_2	47.4803134497789	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAACGTCTTGTCTGCGTGT	5981	False	NA	-8	True	ATTAAA	-13	NA	113679037	113661840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
ENSMUSG00000041219.15_11	chr2	-	2242	1	ISM	ENSMUSG00000041219.15	ENSMUST00000110948.8	4878	11	14925	3	14561	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGTCTTGTCTGCGTGTT	NA	False	NA	-7	True	ATTAAA	-14	NA	113664081	113661839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_113661800_113664100
ENSMUSG00000041220.11_0	chr3	+	5921	5	FSM	ENSMUSG00000041220.11	ENSMUST00000071402.7	5951	5	22	8	22	-8	multi-exon	FALSE	canonical	1	87	junction_1	129.619635858152	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAACTGTTTCTAGTT	NA	False	NA	9	True	AATAAA	-17	NA	129326056	129432136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708
ENSMUSG00000041220.11_23	chr3	+	3156	1	ISM	ENSMUSG00000041220.11	ENSMUST00000071402.7	5951	5	102948	6	82954	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	353	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAACTGTTTCTAGTTCT	NA	False	NA	11	True	AATAAA	-19	NA	129428982	129432138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_129429000_129432100
ENSMUSG00000041220.11_3	chr3	+	5998	4	FSM	ENSMUSG00000041220.11	ENSMUST00000199910.5	2610	4	128	-3516	97	-8	multi-exon	FALSE	canonical	3	229	junction_1	79.2001683499894	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAACTGTTTCTAGTT	NA	False	NA	9	True	AATAAA	-17	NA	129326131	129432136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_129326418_129398689_129398822_129421931_129422084_129426708
ENSMUSG00000041225.17_0	chr18	-	2629	11	ISM	ENSMUSG00000041225.17	ENSMUST00000182066.8	4506	16	59307	788	16884	2	3prime_fragment	FALSE	canonical	3	136	junction_6	16.3841386712882	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGAGTTTTTTTCCATTG	8942	False	NA	-21	True	AATAAA	-16	NA	6053056	6025214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861
ENSMUSG00000041225.17_10	chr18	-	3781	15	NIC	ENSMUSG00000041225.17	novel	2500	17	NA	NA	5	-98	combination_of_known_junctions	FALSE	canonical	3	24	junction_14	49.5805364214299	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTACAATGAGATAAGTGT	17	True	NA	-91	True	NA	NA	NA	6135930	6024524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6069830_6070092_6135803
ENSMUSG00000041225.17_13	chr18	-	3194	16	NIC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_15	50.5179396078484	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGAAATGTGCGTTTTAG	5	True	NA	-5	True	AATAAA	-32	NA	6135942	6025198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6069830_6070092_6135803
ENSMUSG00000041225.17_15	chr18	-	3648	16	NIC	ENSMUSG00000041225.17	novel	2500	17	NA	NA	2	5	combination_of_known_splicesites	FALSE	canonical	3	10	junction_13	45.5037971553535	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTTTTTTCCATTGGAA	-6	True	NA	-18	True	AATAAA	-19	NA	6135953	6025211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6111684_6112440_6115813_6115851_6135803
ENSMUSG00000041225.17_2	chr18	-	4056	18	FSM	ENSMUSG00000041225.17	ENSMUST00000077128.13	4431	18	-34	409	0	3	multi-exon	FALSE	canonical	3	72	junction_11	36.3783463484115	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGCGTTTTAGTTCTT	6	True	NA	0	True	AATAAA	-37	NA	6135941	6025193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135803
ENSMUSG00000041225.17_21	chr18	-	1757	3	ISM	ENSMUSG00000041225.17	ENSMUST00000182066.8	4506	16	84287	767	6631	3	3prime_fragment	FALSE	canonical	3	171	junction_2	5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGCGTTTTAGTTCTT	2030	False	NA	0	True	AATAAA	-37	NA	6028076	6025193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_6026731_6027574_6027678_6027959
ENSMUSG00000041225.17_3	chr18	-	1547	1	ISM	ENSMUSG00000041225.17	ENSMUST00000182066.8	4506	16	86356	34	8700	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATAATAACAAAACCAGTAA	4099	False	NA	-27	True	ATTAAA	-17	NA	6026007	6024460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_6024500_6026000
ENSMUSG00000041225.17_38	chr18	-	3229	16	NIC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	24	junction_15	48.531593375404	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTAGAGTTTTTTTCCA	17	True	NA	-24	True	AATAAA	-13	NA	6135930	6025217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6135803
ENSMUSG00000041225.17_4	chr18	-	4105	19	FSM	ENSMUSG00000041225.17	ENSMUST00000182559.8	4265	19	159	1	2	-1	multi-exon	FALSE	canonical	3	72	junction_11	38.5140666943045	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTAGAGTTTTTTTCCA	8	True	NA	-24	True	AATAAA	-13	NA	6135939	6025217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135803
ENSMUSG00000041225.17_6	chr18	-	3905	17	FSM	ENSMUSG00000041225.17	ENSMUST00000182383.8	2500	17	-50	-1355	3	-4	multi-exon	FALSE	canonical	3	59	junction_13	36.3438440454501	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGGAAATGTGCGTTTT	9	True	NA	-7	True	AATAAA	-30	NA	6135938	6025200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6069830_6070092_6111684_6112440_6115813_6115851_6135803
ENSMUSG00000041225.17_7	chr18	-	3981	18	NIC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	59	junction_14	38.8663756441135	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGAAATGTGCGTTTTAG	10	True	NA	-5	True	AATAAA	-32	NA	6135937	6025198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6069830_6070092_6111684_6112440_6115813_6115851_6135803
ENSMUSG00000041229.16_0	chrX	+	5425	21	NIC	ENSMUSG00000041229.16	novel	5728	22	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	39	junction_12	14.924727803213	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTTGTTGCTTGACATT	NA	False	NA	3	True	GATAAA	-16	NA	150304179	150416852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_150304316_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
ENSMUSG00000041229.16_2	chrX	+	5701	21	NNC	ENSMUSG00000041229.16	novel	6359	22	NA	NA	6	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	23.7762486528048	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGTTGCTTGACATTA	NA	False	NA	4	True	GATAAA	-17	NA	150303673	150416853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_150304085_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
ENSMUSG00000041229.16_3	chrX	+	6002	22	NNC	ENSMUSG00000041229.16	novel	6359	22	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.0701828384257	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTTGTTGCTTGACATT	NA	False	NA	3	True	GATAAA	-16	NA	150303674	150416852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_150304085_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
ENSMUSG00000041229.16_36	chrX	+	2086	1	ISM	ENSMUSG00000041229.16	ENSMUST00000168501.8	6359	22	111099	1	1954	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTTGTTGCTTGACATT	NA	False	NA	3	True	GATAAA	-16	NA	150414766	150416852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150414800_150416900
ENSMUSG00000041229.16_48	chrX	+	3674	8	ISM	ENSMUSG00000041229.16	ENSMUST00000046950.13	5728	22	76212	2	31362	0	3prime_fragment	FALSE	canonical	3	68	junction_6	10.8213696368032	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGTTGCTTGACATTA	NA	False	NA	4	True	GATAAA	-17	NA	150380394	150416853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
ENSMUSG00000041229.16_49	chrX	+	3150	5	ISM	ENSMUSG00000041229.16	ENSMUST00000046950.13	5728	22	78309	3	-30321	-1	3prime_fragment	FALSE	canonical	3	68	junction_3	12.1526746027366	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTTGTTGCTTGACATT	NA	False	NA	3	True	GATAAA	-16	NA	150382491	150416852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
ENSMUSG00000041229.16_8	chrX	+	5726	22	FSM	ENSMUSG00000041229.16	ENSMUST00000046950.13	5728	22	0	2	0	0	multi-exon	FALSE	canonical	3	62	junction_12	12.6336842339938	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGTTGCTTGACATTA	NA	False	NA	4	True	GATAAA	-17	NA	150304182	150416853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_150304316_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
ENSMUSG00000041229.16_9	chrX	+	5842	22	FSM	ENSMUSG00000041229.16	ENSMUST00000168501.8	6359	22	516	1	1	-1	multi-exon	FALSE	canonical	2	12	junction_1	20.027645292538	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTTGTTGCTTGACATT	NA	False	NA	3	True	GATAAA	-16	NA	150304183	150416852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_150304434_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
ENSMUSG00000041231.16_0	chr11	-	2059	11	FSM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	23	6	23	-4	multi-exon	FALSE	canonical	2	61	junction_9	50.7897627480184	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATTGGTTATCTGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	44361302	44345403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
ENSMUSG00000041231.16_13	chr11	-	414	1	ISM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	15508	6	3252	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATTGGTTATCTGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	44345817	44345403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_44345400_44345800
ENSMUSG00000041231.16_4	chr11	-	2008	10	ISM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	3490	6	66	-4	3prime_fragment	FALSE	canonical	2	61	junction_9	51.8454493401682	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATTGGTTATCTGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	44357835	44345403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641
ENSMUSG00000041235.13_1	chr4	+	9576	38	NIC	ENSMUSG00000041235.13	novel	3462	5	NA	NA	-12	-36	combination_of_known_junctions	TRUE	canonical	3	42	junction_5	13.3684101547544	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAGAGAAAAAAA	31	False	NA	NA	False	NA	NA	NA	8690457	8866774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_8690776_8751323_8753149_8785341_8785764_8801323_8801466_8805150_8805289_8806295_8806362_8811439_8811496_8822376_8822492_8825461_8825546_8826208_8826347_8826442_8826565_8826883_8827128_8828231_8828409_8832474_8832619_8833739_8833996_8838550_8838762_8839424_8839621_8840388_8840557_8841095_8841276_8844311_8844423_8844506_8844713_8847078_8847279_8847456_8847617_8850795_8850886_8851253_8851358_8852677_8852808_8853173_8853247_8853402_8853461_8854064_8854294_8854524_8854734_8854845_8855515_8856673_8856832_8858478_8858707_8859042_8859487_8862489_8862712_8863908_8864050_8864200_8864306_8865737
ENSMUSG00000041235.13_17	chr4	+	10204	38	NIC	ENSMUSG00000041235.13	novel	10216	38	NA	NA	-5	-14	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	16.8081165825718	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCAGAGATGTAGTTAT	18	True	NA	2	True	AATAAA	-12	NA	8691359	8867645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_8691435_8751323_8753149_8785341_8785764_8801323_8801466_8805150_8805289_8806295_8806362_8811439_8811496_8822376_8822492_8825461_8825546_8826208_8826347_8826442_8826565_8826883_8827128_8828231_8828409_8832474_8832619_8833739_8833996_8838550_8838762_8839424_8839621_8840388_8840557_8841095_8841276_8844311_8844423_8844506_8844713_8847078_8847279_8847456_8847617_8850795_8850886_8851253_8851358_8852677_8852808_8853173_8853247_8853402_8853461_8854064_8854294_8854524_8854734_8854845_8855515_8856673_8856832_8858478_8858707_8859042_8859487_8862489_8862712_8863908_8864050_8864200_8864306_8865737
ENSMUSG00000041235.13_34	chr4	+	5039	17	NIC	ENSMUSG00000041235.13	novel	10216	38	NA	NA	6848	-12	combination_of_known_junctions	FALSE	canonical	3	49	junction_5	11.9698514506238	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAGAGATGTAGTTATAG	4133	False	NA	4	True	AATAAA	-14	NA	8847169	8867647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_8847279_8847456_8847617_8850795_8850886_8851253_8851358_8852677_8852808_8853173_8853247_8853402_8853461_8854064_8854294_8854524_8854734_8854845_8855515_8856673_8856832_8858478_8858707_8859042_8859487_8862489_8862712_8863908_8864050_8864200_8864306_8865737
ENSMUSG00000041235.13_42	chr4	+	3443	8	NIC	ENSMUSG00000041235.13	novel	10216	38	NA	NA	47	-14	combination_of_known_junctions	FALSE	canonical	3	67	junction_1	9.84782167977948	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCAGAGATGTAGTTAT	1076	False	NA	2	True	AATAAA	-12	NA	8855277	8867645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_8855515_8856673_8856832_8858478_8858707_8859042_8859487_8862489_8862712_8863908_8864050_8864200_8864306_8865737
ENSMUSG00000041235.13_47	chr4	+	1355	1	ISM	ENSMUSG00000041235.13	ENSMUST00000051558.10	10216	38	174932	8	11066	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGATGTAGTTATAGAATG	NA	False	NA	8	True	AATAAA	-18	NA	8866296	8867651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_8866300_8867700
ENSMUSG00000041235.13_61	chr4	+	4146	10	NIC	ENSMUSG00000041235.13	novel	10216	38	NA	NA	-1002	-17	combination_of_known_junctions	FALSE	canonical	3	67	junction_1	10.6955627120968	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATATGCAGAGATGTAGT	27	False	NA	-1	True	AATAAA	-9	NA	8854228	8867642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_8854294_8854524_8854734_8854845_8855515_8856673_8856832_8858478_8858707_8859042_8859487_8862489_8862712_8863908_8864050_8864200_8864306_8865737
ENSMUSG00000041235.13_8	chr4	+	9578	38	NIC	ENSMUSG00000041235.13	novel	3462	5	NA	NA	-11	-36	combination_of_known_junctions	FALSE	canonical	3	11	junction_31	15.9110933823654	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAGAGAAAAAAA	32	False	NA	NA	False	NA	NA	NA	8690458	8866774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_8690776_8751323_8753149_8785341_8785764_8801323_8801466_8805150_8805289_8806295_8806362_8811439_8811496_8822376_8822492_8825461_8825546_8826208_8826347_8826442_8826565_8826883_8827128_8828231_8828409_8832474_8832619_8833739_8833996_8838550_8838762_8839424_8839621_8840388_8840557_8841095_8841276_8844311_8844423_8844506_8844713_8847078_8847279_8847456_8847617_8850795_8850886_8851253_8851358_8852677_8852808_8853173_8853247_8853402_8853461_8854064_8854294_8854524_8854734_8854845_8855515_8856670_8856832_8858478_8858707_8859042_8859487_8862489_8862712_8863908_8864050_8864200_8864306_8865737
ENSMUSG00000041236.9_0	chr13	+	3181	29	FSM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	10	8	10	-8	multi-exon	TRUE	canonical	3	419	junction_25	60.5186237990473	913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGAATCCTTTATTGTG	NA	False	NA	15	True	AATAAA	-14	NA	18901469	19050973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
ENSMUSG00000041236.9_56	chr13	+	1739	12	ISM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	124870	8	-2703	-8	3prime_fragment	FALSE	canonical	3	419	junction_8	63.056055345244	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGAATCCTTTATTGTG	NA	False	NA	15	True	AATAAA	-14	NA	19026329	19050973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
ENSMUSG00000041238.17_0	chr18	+	3243	19	FSM	ENSMUSG00000041238.17	ENSMUST00000047322.8	3209	19	-36	2	10	-2	multi-exon	FALSE	canonical	3	177	junction_1	21.3625378803961	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAATAACTAAAATGTGGA	3255	False	NA	7	True	ATTAAA	-29	NA	11790449	11875933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
ENSMUSG00000041238.17_28	chr18	+	3070	19	NIC	ENSMUSG00000041238.17	novel	781	8	NA	NA	5	-2	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	44.3982051133146	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAATAACTAAAATGTGGA	3709	False	NA	7	True	ATTAAA	-29	NA	11790903	11875933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_11791031_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
ENSMUSG00000041241.13_0	chr4	+	1328	4	FSM	ENSMUSG00000041241.13	ENSMUST00000044058.11	3733	4	44	2361	-8	893	multi-exon	FALSE	canonical	3	201	junction_3	1.24721912892465	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGGCCAGTCCTCTCCGA	NA	False	NA	15	True	NA	NA	NA	138162025	138167215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_138162191_138164938_138165027_138165552_138165674_138166261
ENSMUSG00000041241.13_12	chr4	+	605	1	ISM	ENSMUSG00000041241.13	ENSMUST00000044058.11	3733	4	4624	2366	4572	888	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTCCAAGGCCAGTCCTC	NA	False	NA	10	True	NA	NA	NA	138166605	138167210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_138166600_138167200
ENSMUSG00000041241.13_7	chr4	+	3875	5	NIC	ENSMUSG00000041241.13	novel	3944	5	NA	NA	3	-20	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	95.7584852637091	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTGGGTTTCTTTCATG	NA	False	NA	1	True	NA	NA	NA	138162036	138169553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_138162191_138163490_138163711_138164938_138165027_138165552_138165674_138166261
ENSMUSG00000041245.14_11	chrX	+	8693	16	ISM	ENSMUSG00000041245.14	ENSMUST00000184730.8	5253	22	34949	-4979	25277	13	3prime_fragment	FALSE	canonical	3	24	junction_9	3.49857113690718	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAAAATTCTGTCATAT	NA	False	NA	NA	False	AATAAA	-32	NA	150016022	150103161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150016236_150019529_150019631_150019888_150020033_150049263_150049329_150057913_150058062_150059848_150059966_150067265_150067422_150067500_150067553_150068774_150068913_150069255_150070203_150076805_150076897_150077417_150077549_150078359_150078971_150084561_150084771_150092277_150092481_150097794
ENSMUSG00000041245.14_12	chrX	+	7401	7	ISM	ENSMUSG00000041245.14	ENSMUST00000184730.8	5253	22	88337	-4976	-8105	10	3prime_fragment	FALSE	canonical	3	26	junction_5	3.44802681092953	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTATTAAAATTCTGTCA	NA	False	NA	NA	False	AATAAA	-29	NA	150069410	150103158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150070203_150076805_150076897_150077417_150077549_150078359_150078971_150084561_150084771_150092277_150092481_150097794
ENSMUSG00000041245.14_13	chrX	+	6486	5	FSM	ENSMUSG00000041245.14	ENSMUST00000133852.2	6410	5	-79	3	-79	-3	multi-exon	FALSE	canonical	3	26	junction_3	2.12132034355964	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGTATGTCACCTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	150077436	150103145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_150077549_150078359_150078971_150084561_150084771_150092277_150092481_150097794
ENSMUSG00000041245.14_15	chrX	+	5557	2	ISM	ENSMUSG00000041245.14	ENSMUST00000133852.2	6410	5	14762	0	14762	0	3prime_fragment	FALSE	canonical	3	31	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTATGTCACCTTATTAA	NA	False	NA	NA	False	AATAAA	-19	NA	150092277	150103148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150092481_150097794
ENSMUSG00000041245.14_17	chrX	+	3719	1	ISM	ENSMUSG00000041245.14	ENSMUST00000133852.2	6410	5	21911	3	21911	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGTATGTCACCTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	150099426	150103145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_150099400_150103100
ENSMUSG00000041245.14_3	chrX	+	10389	23	Fusion	ENSMUSG00000041245.14_ENSMUSG00000086286.2	novel	5253	22	NA	NA	-104	-3	multi-exon	TRUE	canonical	3	19	junction_6	4.9057227502662	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGTATGTCACCTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	149952591	150103145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chrX_+_149952709_149981017_149981670_149990593_149990767_149992270_149992492_149993868_149994027_150009451_150009541_150013228_150013449_150015940_150016236_150019529_150019631_150019888_150020033_150049263_150049329_150057913_150058062_150059848_150059966_150067265_150067422_150067500_150067553_150068774_150068913_150069255_150070203_150076805_150076897_150077417_150077549_150078359_150078971_150084561_150084771_150092277_150092481_150097794
ENSMUSG00000041258.19_0	chr18	-	3152	1	ISM	ENSMUSG00000041258.19	ENSMUST00000171071.9	9626	30	96135	4	21002	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCCCGTATATTTACT	4025	False	NA	0	True	AATAAA	-21	NA	82614873	82611721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82611700_82614900
ENSMUSG00000041258.19_1	chr18	-	4692	5	ISM	ENSMUSG00000041258.19	ENSMUST00000183324.8	3227	8	9974	-1879	9974	-4	3prime_fragment	FALSE	canonical	2	9	junction_4	10.1242283656583	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCCCGTATATTTACT	NA	False	NA	0	True	AATAAA	-21	NA	82625901	82611721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872
ENSMUSG00000041258.19_10	chr18	-	4741	14	ISM	ENSMUSG00000041258.19	ENSMUST00000182122.8	6059	31	62673	-1692	10156	13	3prime_fragment	FALSE	canonical	1	5	junction_10	8.97992501385384	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGTGGTGTATGTGTGG	NA	False	NA	NA	False	CATAAA	-36	NA	82648186	82613587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834_82636015_82636867_82637109_82638442_82638589_82639215_82639582_82641084_82641189_82642328_82642612_82646278_82646492_82648095
ENSMUSG00000041258.19_11	chr18	-	7734	31	NIC	ENSMUSG00000041258.19	novel	6059	31	NA	NA	-22	11	combination_of_known_junctions	FALSE	canonical	1	2	junction_23	19.3459728798183	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGTGGTGTATGTGT	NA	False	NA	NA	False	CATAAA	-34	NA	82710881	82613589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834_82636015_82636867_82637109_82638442_82638589_82639215_82639582_82641084_82641189_82642328_82642612_82646278_82646492_82648095_82648248_82648711_82648816_82651102_82651255_82651811_82651914_82654857_82655115_82657444_82657706_82658224_82658367_82662181_82662386_82664093_82664367_82675073_82675266_82676127_82676332_82682962_82683107_82686696_82686870_82689810_82689936_82692431_82692611_82698716_82698882_82700269_82700413_82710767
ENSMUSG00000041258.19_12	chr18	-	7749	31	FSM	ENSMUSG00000041258.19	ENSMUST00000182122.8	6059	31	3	-1693	3	14	multi-exon	FALSE	canonical	1	4	junction_23	19.2837294687055	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGGTGTATGTGTGGT	NA	False	NA	NA	False	CATAAA	-37	NA	82710856	82613586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834_82636015_82636867_82637109_82638442_82638589_82639215_82639582_82641084_82641189_82642328_82642612_82646278_82646492_82648095_82648248_82648711_82648816_82651102_82651255_82651811_82651914_82654857_82655115_82657444_82657706_82658224_82658367_82662181_82662386_82664093_82664367_82675073_82675303_82676127_82676332_82682962_82683107_82686696_82686870_82689810_82689936_82692431_82692611_82698716_82698882_82700269_82700413_82710767
ENSMUSG00000041258.19_13	chr18	-	3434	8	ISM	ENSMUSG00000041258.19	ENSMUST00000182122.8	6059	31	73853	-1690	-1131	11	3prime_fragment	FALSE	canonical	2	9	junction_4	8.7458444942937	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGTGGTGTATGTGT	NA	False	NA	NA	False	CATAAA	-34	NA	82637006	82613589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834_82636015_82636867
ENSMUSG00000041258.19_14	chr18	-	3736	10	ISM	ENSMUSG00000041258.19	ENSMUST00000182122.8	6059	31	71593	-1693	-3391	14	3prime_fragment	FALSE	canonical	2	9	junction_4	8.07067546548217	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGGTGTATGTGTGGT	NA	False	NA	NA	False	CATAAA	-37	NA	82639266	82613586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834_82636015_82636867_82637109_82638442_82638589_82639215
ENSMUSG00000041258.19_15	chr18	-	4316	13	NIC	ENSMUSG00000041258.19	novel	9626	30	NA	NA	-6535	11	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	10.719919153924	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGTGGTGTATGTGT	NA	False	NA	NA	False	CATAAA	-34	NA	82642410	82613589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82628729_82628812_82635834_82636015_82636867_82637109_82638442_82638589_82639215_82639582_82641084_82641189_82642328
ENSMUSG00000041258.19_2	chr18	-	4819	6	ISM	ENSMUSG00000041258.19	ENSMUST00000183324.8	3227	8	8439	-1879	8439	-4	3prime_fragment	FALSE	canonical	2	9	junction_4	9.60416576283438	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCCCGTATATTTACT	NA	False	NA	0	True	AATAAA	-21	NA	82627436	82611721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412
ENSMUSG00000041258.19_24	chr18	-	3201	7	ISM	ENSMUSG00000041258.19	ENSMUST00000182122.8	6059	31	74939	-1690	-45	11	3prime_fragment	FALSE	canonical	2	9	junction_4	9.4413393588457	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGTGGTGTATGTGT	NA	False	NA	NA	False	CATAAA	-34	NA	82635920	82613589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834
ENSMUSG00000041258.19_26	chr18	-	4931	16	ISM	ENSMUSG00000041258.19	ENSMUST00000182122.8	6059	31	59730	-1690	7213	11	3prime_fragment	FALSE	canonical	1	5	junction_10	8.48266205595599	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGTGGTGTATGTGT	NA	False	NA	NA	False	CATAAA	-34	NA	82651129	82613589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834_82636015_82636867_82637109_82638442_82638589_82639215_82639582_82641084_82641189_82642328_82642612_82646278_82646492_82648095_82648248_82648711_82648816_82651102
ENSMUSG00000041258.19_4	chr18	-	4492	4	ISM	ENSMUSG00000041258.19	ENSMUST00000183324.8	3227	8	13535	-1879	13535	-4	3prime_fragment	FALSE	canonical	3	26	junction_3	4.78423336480244	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCCCGTATATTTACT	NA	False	NA	0	True	AATAAA	-21	NA	82622340	82611721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313
ENSMUSG00000041258.19_5	chr18	-	4534	13	ISM	ENSMUSG00000041258.19	ENSMUST00000182122.8	6059	31	64488	-1696	-10496	17	3prime_fragment	TRUE	canonical	1	5	junction_10	9.33147302888932	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTGTATGTGTGGTTTT	NA	False	NA	NA	False	CATAAA	-40	NA	82646371	82613583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834_82636015_82636867_82637109_82638442_82638589_82639215_82639582_82641084_82641189_82642328_82642612_82646278
ENSMUSG00000041258.19_6	chr18	-	4176	12	ISM	ENSMUSG00000041258.19	ENSMUST00000182122.8	6059	31	68511	-1694	-6473	15	3prime_fragment	FALSE	canonical	2	5	junction_10	8.99494807706475	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGTGTATGTGTGGTT	NA	False	NA	NA	False	CATAAA	-38	NA	82642348	82613585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834_82636015_82636867_82637109_82638442_82638589_82639215_82639582_82641084_82641189_82642328
ENSMUSG00000041258.19_7	chr18	-	5526	19	ISM	ENSMUSG00000041258.19	ENSMUST00000182122.8	6059	31	53307	-1693	790	14	3prime_fragment	FALSE	canonical	1	5	junction_10	7.81024967590665	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGGTGTATGTGTGGT	NA	False	NA	NA	False	CATAAA	-37	NA	82657552	82613586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834_82636015_82636867_82637109_82638442_82638589_82639215_82639582_82641084_82641189_82642328_82642612_82646278_82646492_82648095_82648248_82648711_82648816_82651102_82651255_82651811_82651914_82654857_82655115_82657444
ENSMUSG00000041258.19_8	chr18	-	1552	1	ISM	ENSMUSG00000041258.19	ENSMUST00000171071.9	9626	30	95867	1872	20734	11	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGTGGTGTATGTGT	3757	False	NA	NA	False	CATAAA	-34	NA	82615141	82613589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_82613600_82615100
ENSMUSG00000041261.10_1	chr4	-	1934	9	FSM	ENSMUSG00000041261.10	ENSMUST00000066674.8	3853	9	1	1918	1	-1918	multi-exon	FALSE	canonical	3	29	junction_2	2.31503239718152	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTGTTGCACTCTCAAT	0	True	NA	NA	False	AATAAA	-15	NA	8239040	8145279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_8146217_8169595_8169766_8183252_8183366_8184583_8184633_8185575_8185639_8189296_8189393_8221549_8221675_8237918_8238111_8238851
ENSMUSG00000041263.15_1	chr3	-	1891	9	NIC	ENSMUSG00000041263.15	novel	1922	9	NA	NA	11	0	combination_of_known_junctions	TRUE	canonical	1	4	junction_8	10.5999705188269	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	88997271	88991287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975_88997075_88997227
ENSMUSG00000041263.15_2	chr3	-	2168	9	ISM	ENSMUSG00000041263.15	ENSMUST00000090929.12	3706	11	2474	0	-771	0	3prime_fragment	FALSE	canonical	2	6	junction_8	9.96791728496981	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	88998123	88991287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975_88997075_88997802
ENSMUSG00000041263.15_3	chr3	-	1878	9	FSM	ENSMUSG00000041263.15	ENSMUST00000166687.6	1922	9	44	0	-26	0	multi-exon	FALSE	canonical	2	2	junction_8	11.2354072022335	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	88997308	88991287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975_88997075_88997277
ENSMUSG00000041263.15_4	chr3	-	3308	10	FSM	ENSMUSG00000041263.15	ENSMUST00000052539.13	3316	10	8	0	8	0	multi-exon	FALSE	canonical	0	0	junction_9	13.9292746170798	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	89000610	88991287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975_88997075_88998444_88999869_89000573
ENSMUSG00000041264.17_11	chr5	+	2954	9	FSM	ENSMUSG00000041264.17	ENSMUST00000117878.8	2931	9	-26	3	12	0	multi-exon	FALSE	canonical	3	110	junction_8	110.241141934398	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121499	149152240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
ENSMUSG00000041264.17_12	chr5	+	3466	8	FSM	ENSMUSG00000041264.17	ENSMUST00000121416.8	3792	8	328	-2	0	0	multi-exon	FALSE	canonical	3	149	junction_1	82.9762690441658	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121487	149152240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ENSMUSG00000041264.17_21	chr5	+	3809	10	FSM	ENSMUSG00000041264.17	ENSMUST00000122160.8	3827	10	18	0	3	0	multi-exon	FALSE	canonical	3	36	junction_1	142.108287696738	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121490	149152240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_149121617_149122294_149122472_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ENSMUSG00000041264.17_29	chr5	+	3581	9	FSM	ENSMUSG00000041264.17	ENSMUST00000119685.8	3604	9	23	0	12	0	multi-exon	FALSE	canonical	3	22	junction_2	126.885713833355	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121499	149152240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_149121617_149124517_149124645_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ENSMUSG00000041264.17_3	chr5	+	3623	9	FSM	ENSMUSG00000041264.17	ENSMUST00000050472.16	3757	9	130	4	12	0	multi-exon	FALSE	canonical	3	191	junction_1	75.8798392196504	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121499	149152240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ENSMUSG00000041264.17_4	chr5	+	3123	10	FSM	ENSMUSG00000041264.17	ENSMUST00000100410.10	3148	10	24	1	12	0	multi-exon	FALSE	canonical	3	110	junction_9	101.142119787266	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121499	149152240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
ENSMUSG00000041264.17_76	chr5	+	1393	1	ISM	ENSMUSG00000041264.17	ENSMUST00000050472.16	3757	9	29478	4	22702	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	6577	False	NA	12	True	ATTAAA	-12	NA	149150847	149152240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_149150800_149152200
ENSMUSG00000041268.18_15	chr9	-	10478	44	FSM	ENSMUSG00000041268.18	ENSMUST00000118163.8	10614	44	21	115	21	-13	multi-exon	TRUE	canonical	3	8	junction_28	15.8606697115632	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTTAGAGTTTTATTTT	6953	False	NA	-115	True	AATACA	-18	NA	54408889	54272556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_54273912_54274837_54275056_54276493_54276547_54277155_54277248_54281936_54282015_54282562_54282691_54282789_54282851_54283506_54283646_54285997_54286120_54286200_54286288_54287058_54287122_54288191_54288310_54289136_54289339_54289919_54290006_54290940_54291072_54294696_54294876_54300911_54301161_54303523_54303655_54305330_54305408_54307225_54307418_54308200_54309271_54311240_54311506_54313031_54313198_54313880_54313979_54316434_54316605_54318883_54318995_54322713_54324388_54327028_54327257_54330513_54330634_54333665_54333790_54335317_54335408_54352666_54352789_54353655_54354350_54358080_54358353_54358885_54359126_54364907_54365083_54366137_54366322_54368222_54368402_54379475_54379543_54380171_54380308_54381120_54381200_54384740_54384813_54387623_54387750_54408634
ENSMUSG00000041268.18_19	chr9	-	3082	16	FSM	ENSMUSG00000041268.18	ENSMUST00000144736.8	2958	16	-127	3	-72	-3	multi-exon	FALSE	canonical	3	8	junction_1	17.8940089291236	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGAAAATGCTTTAGATT	6860	False	NA	NA	False	AATAAA	-9	NA	54408982	54330459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_54330634_54333665_54333790_54335317_54335408_54352666_54352789_54353655_54354350_54358080_54358353_54358885_54359126_54364907_54365083_54366137_54366322_54368222_54368402_54379475_54379543_54380171_54380308_54381120_54381200_54384740_54384813_54387623_54387750_54408634
ENSMUSG00000041268.18_21	chr9	-	2712	13	ISM	ENSMUSG00000041268.18	ENSMUST00000144736.8	2958	16	-97	22162	-42	-4	5prime_fragment	FALSE	canonical	3	29	junction_1	10.0950345329881	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAAGACCGTGGTTGGTA	6890	False	NA	NA	False	AATAAA	-14	NA	54408952	54352618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_54352789_54353655_54354350_54358080_54358353_54358885_54359126_54364907_54365083_54366137_54366322_54368222_54368402_54379475_54379543_54380171_54380308_54381120_54381200_54384740_54384813_54387623_54387750_54408634
ENSMUSG00000041268.18_26	chr9	-	3278	17	ISM	ENSMUSG00000041268.18	ENSMUST00000118163.8	10614	44	107946	2	-11787	-2	3prime_fragment	FALSE	canonical	3	15	junction_9	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCCTAAACTGTTTATT	NA	False	NA	-2	True	AATAAA	-25	NA	54300964	54272443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_54273912_54274837_54275056_54276493_54276547_54277155_54277248_54281936_54282015_54282562_54282691_54282789_54282851_54283506_54283646_54285997_54286120_54286200_54286288_54287058_54287122_54288191_54288310_54289136_54289339_54289919_54290006_54290940_54291072_54294696_54294876_54300911
ENSMUSG00000041268.18_27	chr9	-	5094	22	ISM	ENSMUSG00000041268.18	ENSMUST00000118163.8	10614	44	97520	2	-22213	-2	3prime_fragment	FALSE	canonical	3	15	junction_9	4.38043475202862	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCCTAAACTGTTTATT	NA	False	NA	-2	True	AATAAA	-25	NA	54311390	54272443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_54273912_54274837_54275056_54276493_54276547_54277155_54277248_54281936_54282015_54282562_54282691_54282789_54282851_54283506_54283646_54285997_54286120_54286200_54286288_54287058_54287122_54288191_54288310_54289136_54289339_54289919_54290006_54290940_54291072_54294696_54294876_54300911_54301161_54303523_54303655_54305330_54305408_54307225_54307418_54308200_54309271_54311240
ENSMUSG00000041268.18_28	chr9	-	4321	21	ISM	ENSMUSG00000041268.18	ENSMUST00000118163.8	10614	44	100252	13	-19481	-7	3prime_fragment	FALSE	canonical	3	15	junction_9	4.26936763467378	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAACTTTAATCCCCTA	NA	False	NA	-13	True	AATAAA	-14	NA	54308658	54272454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_54273912_54274837_54275056_54276493_54276547_54277155_54277248_54281936_54282015_54282562_54282691_54282789_54282851_54283506_54283646_54285997_54286120_54286200_54286288_54287058_54287122_54288191_54288310_54289136_54289339_54289919_54290006_54290940_54291072_54294696_54294876_54300911_54301161_54303523_54303655_54305330_54305408_54307225_54307418_54308200
ENSMUSG00000041268.18_29	chr9	-	3701	20	ISM	ENSMUSG00000041268.18	ENSMUST00000118163.8	10614	44	101659	9	-18074	-3	3prime_fragment	FALSE	canonical	3	15	junction_9	4.30872335534652	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTTTAATCCCCTAAACT	NA	False	NA	-9	True	AATAAA	-18	NA	54307251	54272450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_54273912_54274837_54275056_54276493_54276547_54277155_54277248_54281936_54282015_54282562_54282691_54282789_54282851_54283506_54283646_54285997_54286120_54286200_54286288_54287058_54287122_54288191_54288310_54289136_54289339_54289919_54290006_54290940_54291072_54294696_54294876_54300911_54301161_54303523_54303655_54305330_54305408_54307225
ENSMUSG00000041268.18_36	chr9	-	3603	12	NIC	ENSMUSG00000041268.18	novel	2958	16	NA	NA	-66	-4	intron_retention	FALSE	canonical	3	36	junction_9	8.35671650493192	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAAGACCGTGGTTGGTA	6866	False	NA	NA	False	AATAAA	-14	NA	54408976	54352618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_54354350_54358080_54358353_54358885_54359126_54364907_54365083_54366137_54366322_54368222_54368402_54379475_54379543_54380171_54380308_54381120_54381200_54384740_54384813_54387623_54387750_54408634
ENSMUSG00000041268.18_43	chr9	-	1647	2	ISM	ENSMUSG00000041268.18	ENSMUST00000154092.2	4039	11	14041	116	14041	-20	3prime_fragment	FALSE	canonical	3	27	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTATTTGTTAGAGTT	NA	False	NA	-122	True	AATACA	-11	NA	54275136	54272563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_54273912_54274837
ENSMUSG00000041268.18_8	chr9	-	2958	15	ISM	ENSMUSG00000041268.18	ENSMUST00000118163.8	10614	44	117927	2	-1806	-2	3prime_fragment	FALSE	canonical	3	15	junction_9	4.65164004433284	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCCTAAACTGTTTATT	NA	False	NA	-2	True	AATAAA	-25	NA	54290983	54272443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_54273912_54274837_54275056_54276493_54276547_54277155_54277248_54281936_54282015_54282562_54282691_54282789_54282851_54283506_54283646_54285997_54286120_54286200_54286288_54287058_54287122_54288191_54288310_54289136_54289339_54289919_54290006_54290940
ENSMUSG00000041278.11_0	chr11	-	1450	8	FSM	ENSMUSG00000041278.11	ENSMUST00000048578.3	1438	8	-10	-2	0	2	multi-exon	FALSE	canonical	3	649	junction_5	59.12318513416	594	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGGGACTATGTTGTTA	NA	False	NA	-8	True	AATAAA	-14	NA	43638819	43620833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_43621435_43627245_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
ENSMUSG00000041287.6_0	chr11	+	1118	2	FSM	ENSMUSG00000041287.6	ENSMUST00000047373.6	861	2	-276	19	-276	-19	multi-exon	FALSE	canonical	3	116	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCATGTTTCGGAGTCT	NA	False	NA	5	True	ACTAAA	-18	NA	69545863	69547534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69546726_69547278
ENSMUSG00000041297.9_23	chr13	-	3964	7	ISM	ENSMUSG00000041297.9	ENSMUST00000042365.9	5202	14	-453	31951	-7	16887	5prime_fragment	FALSE	canonical	3	43	junction_3	13.208793367383	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTGATTGTAGCTTTTA	NA	False	NA	NA	False	NA	NA	NA	17979689	17923930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_17924899_17926255_17926446_17937688_17937860_17939538_17939679_17941020_17941192_17946885_17947543_17978022
ENSMUSG00000041297.9_25	chr13	-	2706	3	FSM	ENSMUSG00000041297.9	ENSMUST00000222848.2	1062	3	-1644	0	-15	0	multi-exon	FALSE	canonical	3	79	junction_2	1	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACAGTTTGTAATTATTA	NA	False	NA	NA	False	AATAAA	-16	NA	17979697	17940817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_17941192_17946885_17947543_17978022
ENSMUSG00000041297.9_3	chr13	-	2179	1	ISM	ENSMUSG00000041297.9	ENSMUST00000223490.2	12548	14	86944	5660	21300	1420	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATAAAATTGACTTGTGT	442	False	NA	NA	False	ATTAAA	-6	NA	17892738	17890559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_17890600_17892700
ENSMUSG00000041297.9_4	chr13	-	5384	14	FSM	ENSMUSG00000041297.9	ENSMUST00000223490.2	12548	14	-4	7168	-4	-23	multi-exon	FALSE	canonical	3	30	junction_2	13.284773505807	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCAACAGTTTTATATAAA	NA	False	NA	-7	True	AATAAA	-18	NA	17979686	17892067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_17893497_17893940_17894211_17895672_17895879_17901704_17901837_17902651_17902769_17913501_17913580_17913675_17913778_17924841_17924899_17926255_17926446_17937688_17937860_17939538_17939679_17941020_17941192_17946885_17947543_17978022
ENSMUSG00000041297.9_5	chr13	-	5575	14	FSM	ENSMUSG00000041297.9	ENSMUST00000042365.9	5202	14	-457	84	-11	-19	multi-exon	FALSE	canonical	3	33	junction_2	12.8002403823582	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAGTTTTATATAAAAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	17979693	17892063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_17893497_17893940_17894391_17895672_17895879_17901704_17901837_17902651_17902769_17913501_17913580_17913675_17913778_17924841_17924899_17926255_17926446_17937688_17937860_17939538_17939679_17941020_17941192_17946885_17947543_17978022
ENSMUSG00000041298.16_1	chr5	-	4074	1	ISM	ENSMUSG00000041298.16	ENSMUST00000047257.15	6157	11	52983	7	3415	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGATGCTTTGAGATCT	NA	False	NA	NA	False	AATAAA	-9	NA	148812474	148808400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_148808400_148812500
ENSMUSG00000041298.16_2	chr5	-	1669	11	FSM	ENSMUSG00000041298.16	ENSMUST00000047257.15	6157	11	13	4475	-6	-376	multi-exon	FALSE	canonical	0	0	junction_7	3.86781592116274	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTAATCAGAGGAATCTT	2456	False	NA	NA	False	ATTAAA	-16	NA	148865444	148812868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_148813147_148815667_148815795_148825688_148825824_148828438_148828566_148829319_148829479_148830492_148830599_148830958_148831087_148841376_148841540_148855405_148855567_148858046_148858223_148865335
ENSMUSG00000041303.8_0	chr1	-	3004	18	FSM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	2	1576	2	-1576	multi-exon	FALSE	canonical	3	130	junction_11	22.8358062796764	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGACAATATTGCCTTC	6702	False	NA	-6	True	AATAAA	-17	NA	54478128	54436738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
ENSMUSG00000041303.8_1	chr1	-	4224	19	NNC	ENSMUSG00000041303.8	novel	4582	18	NA	NA	9	-3	at_least_one_novel_splicesite	TRUE	non_canonical	3	40	junction_1	37.832966224357	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACATTTCACCTTTTAAAC	6709	False	NA	-9	True	AATAAA	-16	NA	54478121	54435165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_54435782_54436127_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
ENSMUSG00000041308.7_0	chr8	+	4419	7	FSM	ENSMUSG00000041308.7	ENSMUST00000212524.2	9945	7	4	5522	3	1012	multi-exon	FALSE	canonical	3	100	junction_2	15.4209453522005	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAATTAAAATAA	NA	False	NA	NA	False	AATAAA	-44	NA	107662385	107740824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_107662954_107707757_107707972_107718027_107718239_107723697_107723841_107728141_107728339_107736412_107736598_107737923
ENSMUSG00000041308.7_14	chr8	+	2344	1	ISM	ENSMUSG00000041308.7	ENSMUST00000212524.2	9945	7	76099	5522	75700	1012	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAATTAAAATAA	NA	False	NA	NA	False	AATAAA	-44	NA	107738480	107740824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107738500_107740800
ENSMUSG00000041308.7_15	chr8	+	3446	1	ISM	ENSMUSG00000041308.7	ENSMUST00000212524.2	9945	7	80518	1	80119	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACATTGTCTCTTGTGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	107742899	107746345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107742900_107746300
ENSMUSG00000041309.18_0	chr7	-	306	2	ISM	ENSMUSG00000041309.18	ENSMUST00000097974.9	1907	4	1872	1	1865	-1	3prime_fragment	FALSE	canonical	3	11	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTCCGCAGGCGCCT	NA	False	NA	-10	True	AATAAA	-19	NA	139160841	139159292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_139159538_139160780
ENSMUSG00000041309.18_2	chr7	-	1910	4	FSM	ENSMUSG00000041309.18	ENSMUST00000097974.9	1907	4	-4	1	-4	-1	multi-exon	FALSE	canonical	3	11	junction_1	33.9803864996658	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTCCGCAGGCGCCT	NA	False	NA	-10	True	AATAAA	-19	NA	139162717	139159292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_139159538_139160780_139161605_139161796_139161970_139162049
ENSMUSG00000041309.18_3	chr7	-	1289	3	FSM	ENSMUSG00000041309.18	ENSMUST00000106095.3	1299	3	-11	21	-4	-21	multi-exon	FALSE	canonical	3	81	junction_2	2	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTCGGAGCCGTGGCTCC	NA	False	NA	-29	True	AATAAA	-15	NA	139162717	139161156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_139161605_139161796_139161970_139162049
ENSMUSG00000041313.15_1	chr5	-	3126	1	ISM	ENSMUSG00000041313.15	ENSMUST00000048116.15	7179	13	69365	4	12190	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	314	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTCACTGTGTGGTCTC	NA	False	NA	-7	True	AATAAA	-16	NA	148267349	148264223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_148264200_148267300
ENSMUSG00000041313.15_2	chr5	-	7094	13	FSM	ENSMUSG00000041313.15	ENSMUST00000048116.15	7179	13	68	17	-45	-17	multi-exon	TRUE	canonical	3	299	junction_1	51.9975293216472	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGGCTTCCACAACTC	5486	False	NA	-20	True	AATAAA	-3	NA	148336646	148264236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_148269354_148270699_148270809_148271301_148271469_148272186_148272405_148273916_148274020_148277345_148277486_148278742_148278966_148279547_148279667_148282612_148282770_148284962_148285122_148288875_148289260_148301971_148302062_148336538
ENSMUSG00000041313.15_6	chr5	-	6180	13	NNC	ENSMUSG00000041313.15	novel	7179	13	NA	NA	-46	-931	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	127.845256940655	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAAATTAAAAA	5485	False	NA	-29	True	NA	NA	NA	148336647	148265150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_148269354_148270699_148270809_148271301_148271469_148272186_148272405_148273916_148274020_148277345_148277486_148278742_148278966_148279548_148279667_148282612_148282770_148284962_148285122_148288875_148289260_148301971_148302062_148336538
ENSMUSG00000041319.15_0	chr17	-	1433	14	FSM	ENSMUSG00000041319.15	ENSMUST00000095579.11	1450	14	16	1	5	0	multi-exon	FALSE	canonical	3	160	junction_13	93.5049281997111	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTGCATTTTATTCC	770	False	NA	-22	True	AATAAA	-13	NA	23892840	23887592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892807
ENSMUSG00000041319.15_1	chr17	-	1501	13	FSM	ENSMUSG00000041319.15	ENSMUST00000047436.11	1504	13	2	1	2	0	multi-exon	TRUE	canonical	3	423	junction_10	38.5186643070603	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTGCATTTTATTCC	796	False	NA	-22	True	AATAAA	-13	NA	23892814	23887592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487
ENSMUSG00000041319.15_3	chr17	-	1426	14	FSM	ENSMUSG00000041319.15	ENSMUST00000115490.9	1431	14	5	0	5	0	multi-exon	FALSE	canonical	3	69	junction_13	116.170706876108	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTGCATTTTATTCC	770	False	NA	-22	True	AATAAA	-13	NA	23892840	23887592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892814
ENSMUSG00000041323.7_1	chr12	+	1791	7	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	41071	31	1772	-31	3prime_fragment	FALSE	canonical	2	4	junction_1	15.3920975395385	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTCTAGTATTAATTA	7173	False	NA	NA	False	AATAAA	-9	NA	105713305	105748675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_105713575_105727726_105727856_105730211_105730281_105732812_105733011_105734788_105735010_105747108_105747268_105747929
ENSMUSG00000041323.7_11	chr12	+	794	4	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	55414	13598	16115	-13598	internal_fragment	FALSE	canonical	3	37	junction_2	6.54896090146283	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAGTACCACTGTCCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	105727648	105735108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_105727856_105730211_105730281_105732812_105733011_105734788
ENSMUSG00000041323.7_5	chr12	+	1595	6	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	55426	24	16127	-24	3prime_fragment	FALSE	canonical	3	37	junction_2	5.54977477020464	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGTATTAATTATCCTGAA	NA	False	NA	NA	False	AATAAA	-16	NA	105727660	105748682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_105727856_105730211_105730281_105732812_105733011_105734788_105735010_105747108_105747268_105747929
ENSMUSG00000041323.7_6	chr12	+	1546	5	NIC	ENSMUSG00000041323.7	novel	3099	18	NA	NA	16115	-16	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	14.2653426176871	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTATCCTGAAGAAGAAAT	NA	False	NA	NA	False	AATAAA	-24	NA	105727648	105748690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_105727856_105732812_105733011_105734788_105735010_105747108_105747268_105747929
ENSMUSG00000041323.7_9	chr12	+	1430	4	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	60485	18	21186	-18	3prime_fragment	FALSE	canonical	3	39	junction_3	6.0184900284226	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTATCCTGAAGAAGAA	NA	False	NA	NA	False	AATAAA	-22	NA	105732719	105748688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_105733011_105734788_105735010_105747108_105747268_105747929
ENSMUSG00000041328.17_1	chr7	-	2769	9	ISM	ENSMUSG00000041328.17	ENSMUST00000151177.2	4731	13	5317	-543	5317	-174	3prime_fragment	FALSE	canonical	3	164	junction_7	31.850971335267	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAATCTTGGTTTGTATTT	NA	False	NA	-7	True	AATAAA	-11	NA	92307428	92292924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515
ENSMUSG00000041328.17_18	chr7	-	4588	12	ISM	ENSMUSG00000041328.17	ENSMUST00000151177.2	4731	13	2071	-543	2071	-174	3prime_fragment	FALSE	canonical	3	46	junction_9	60.5692009124568	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAATCTTGGTTTGTATTT	NA	False	NA	-7	True	AATAAA	-11	NA	92310674	92292924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92308612_92309097_92309207_92309389_92310166
ENSMUSG00000041328.17_19	chr7	-	5150	15	ISM	ENSMUSG00000041328.17	ENSMUST00000119954.9	5995	16	3696	712	-2701	5	3prime_fragment	FALSE	canonical	3	109	junction_14	50.802739762211	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGAGTGTAATATTTATG	NA	False	NA	-1	True	NA	NA	NA	92315446	92293462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92309005_92309097_92309207_92309389_92310166_92311285_92312669_92312865_92313174_92313364_92314947
ENSMUSG00000041328.17_3	chr7	-	5787	16	FSM	ENSMUSG00000041328.17	ENSMUST00000119954.9	5995	16	31	177	0	-177	multi-exon	FALSE	canonical	3	78	junction_15	55.0229850961295	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACAATCTTGGTTTGTA	NA	False	NA	-10	True	AATAAA	-8	NA	92319111	92292927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92309005_92309097_92309207_92309389_92310166_92311285_92312669_92312865_92313174_92313364_92314947_92315074_92318636
ENSMUSG00000041328.17_5	chr7	-	6179	16	NIC	ENSMUSG00000041328.17	novel	5995	16	NA	NA	0	-178	intron_retention	FALSE	canonical	3	46	junction_9	61.6724681955679	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAACAATCTTGGTTTGT	NA	False	NA	-11	True	AATAAA	-7	NA	92319111	92292928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92308612_92309097_92309207_92309389_92310166_92311285_92312669_92312865_92313174_92313364_92314947_92315074_92318636
ENSMUSG00000041328.17_6	chr7	-	4099	12	ISM	ENSMUSG00000041328.17	ENSMUST00000119954.9	5995	16	8561	177	2164	-177	3prime_fragment	FALSE	canonical	3	110	junction_9	48.895232913372	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACAATCTTGGTTTGTA	NA	False	NA	-10	True	AATAAA	-8	NA	92310581	92292927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92309005_92309097_92309207_92309389_92310166
ENSMUSG00000041329.14_0	chr11	-	2971	7	FSM	ENSMUSG00000041329.14	ENSMUST00000047889.13	2842	7	-130	1	-17	-1	multi-exon	FALSE	canonical	3	185	junction_6	5.18544972870135	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGAGCCCTGTGTGT	NA	False	NA	-8	True	AATAAA	-32	NA	69496785	69490562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69492239_69492350_69492450_69493250_69493308_69493525_69493732_69493832_69493938_69494250_69494380_69496086
ENSMUSG00000041329.14_5	chr11	-	4680	6	FSM	ENSMUSG00000041329.14	ENSMUST00000144425.2	711	6	-2346	-1623	-17	1	multi-exon	FALSE	canonical	3	193	junction_2	3.13687742827162	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGAGCCCTGTGTGTGC	NA	False	NA	-6	True	AATAAA	-34	NA	69496785	69490560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69492239_69492350_69492450_69493250_69493308_69493525_69493732_69493832_69493938_69494250
ENSMUSG00000041341.11_11	chr12	-	7550	42	FSM	ENSMUSG00000041341.11	ENSMUST00000041055.9	7546	42	-6	2	-6	0	multi-exon	FALSE	canonical	3	12	junction_11	13.111882981186	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGTTGTATACGTCCA	NA	False	NA	0	True	AATAAA	-19	NA	105651476	105582396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_105583563_105587465_105587616_105588361_105588517_105588965_105589088_105589679_105589763_105590173_105590244_105592436_105592642_105592986_105593066_105601178_105601281_105601943_105602139_105602705_105602812_105604169_105604397_105605460_105605664_105607410_105607553_105609448_105609620_105610051_105610129_105610551_105610623_105611090_105611184_105611630_105611738_105612782_105612864_105613011_105613212_105614571_105614723_105615247_105615421_105615733_105615892_105617639_105617783_105618317_105618514_105618787_105618891_105620267_105620542_105624225_105624415_105624526_105624620_105625096_105625248_105627258_105627521_105628873_105628977_105629065_105629221_105630182_105630369_105630902_105631000_105632855_105633036_105635522_105635686_105636933_105637037_105637734_105637888_105641109_105641273_105650927
ENSMUSG00000041341.11_15	chr12	-	3529	19	ISM	ENSMUSG00000041341.11	ENSMUST00000221015.2	3687	21	1349	2	1349	0	3prime_fragment	FALSE	canonical	3	62	junction_14	8.31033864502896	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGTTGTATACGTCCA	2921	False	NA	0	True	AATAAA	-19	NA	105611739	105582396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_105583563_105587465_105587616_105588361_105588517_105588965_105589088_105589679_105589763_105590173_105590244_105592436_105592642_105592986_105593066_105601178_105601281_105601943_105602139_105602705_105602815_105604169_105604397_105605460_105605664_105607410_105607553_105609448_105609620_105610051_105610129_105610551_105610623_105611090_105611184_105611630
ENSMUSG00000041341.11_2	chr12	-	2847	13	ISM	ENSMUSG00000041341.11	ENSMUST00000221015.2	3687	21	7443	3	7443	0	3prime_fragment	FALSE	canonical	3	63	junction_11	8.19001763666531	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGTTGTATACGTCC	9015	False	NA	-1	True	AATAAA	-18	NA	105605645	105582397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_105583563_105587465_105587616_105588361_105588517_105588965_105589088_105589679_105589763_105590173_105590244_105592436_105592642_105592986_105593066_105601178_105601281_105601943_105602139_105602705_105602815_105604169_105604397_105605460
ENSMUSG00000041341.11_3	chr12	-	7549	42	NIC	ENSMUSG00000041341.11	novel	7546	42	NA	NA	-8	-5	combination_of_known_junctions	FALSE	canonical	3	50	junction_40	9.83879584241854	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTAAGATTGTTGTATA	NA	False	NA	-6	True	AATAAA	-13	NA	105651478	105582402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_105583563_105587465_105587616_105588361_105588517_105588965_105589088_105589679_105589763_105590173_105590244_105592436_105592642_105592986_105593066_105601178_105601281_105601943_105602139_105602705_105602815_105604169_105604397_105605460_105605664_105607410_105607553_105609448_105609620_105610051_105610129_105610551_105610623_105611090_105611184_105611630_105611738_105612782_105612864_105613011_105613212_105614571_105614723_105615247_105615421_105615733_105615892_105617639_105617783_105618317_105618514_105618787_105618891_105620267_105620542_105624225_105624415_105624526_105624620_105625096_105625248_105627258_105627521_105628873_105628977_105629065_105629221_105630182_105630369_105630902_105631000_105632855_105633036_105635522_105635686_105636933_105637037_105637734_105637888_105641109_105641273_105650927
ENSMUSG00000041341.11_4	chr12	-	1265	2	ISM	ENSMUSG00000041341.11	ENSMUST00000222395.2	1736	5	1831	5	1831	-5	3prime_fragment	FALSE	canonical	3	81	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTAAGATTGTTGTATA	NA	False	NA	-6	True	AATAAA	-13	NA	105587570	105582402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_105583563_105587465
ENSMUSG00000041341.11_40	chr12	-	4770	28	NIC	ENSMUSG00000041341.11	novel	7546	42	NA	NA	-7223	-5	combination_of_known_junctions	FALSE	canonical	3	57	junction_22	8.63384096891663	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTAAGATTGTTGTATA	NA	False	NA	-6	True	AATAAA	-13	NA	105620311	105582402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_105583563_105587465_105587616_105588361_105588517_105588965_105589088_105589679_105589763_105590173_105590244_105592436_105592642_105592986_105593066_105601178_105601281_105601943_105602139_105602705_105602815_105604169_105604397_105605460_105605664_105607410_105607553_105609448_105609620_105610051_105610129_105610551_105610623_105611090_105611184_105611630_105611738_105612782_105612864_105613011_105613212_105614571_105614723_105615247_105615421_105615733_105615892_105617639_105617783_105618317_105618514_105618787_105618891_105620267
ENSMUSG00000041341.11_8	chr12	-	2513	12	ISM	ENSMUSG00000041341.11	ENSMUST00000221015.2	3687	21	8842	2	-8358	0	3prime_fragment	FALSE	canonical	3	63	junction_11	8.44035955522557	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGTTGTATACGTCCA	NA	False	NA	0	True	AATAAA	-19	NA	105604246	105582396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_105583563_105587465_105587616_105588361_105588517_105588965_105589088_105589679_105589763_105590173_105590244_105592436_105592642_105592986_105593066_105601178_105601281_105601943_105602139_105602705_105602815_105604169
ENSMUSG00000041343.20_0	chr7	-	2728	12	FSM	ENSMUSG00000041343.20	ENSMUST00000118157.8	2782	12	32	22	-8	-6	multi-exon	FALSE	canonical	2	2	junction_3	4.22702834093188	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATCTGTATTTTACTG	NA	False	NA	NA	False	ATTAAA	-19	NA	92286318	92233412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_92233754_92239322_92239468_92241038_92241166_92254415_92254589_92259752_92259859_92261950_92262077_92263559_92263761_92268755_92268892_92273175_92273296_92274978_92275087_92280706_92280871_92285337
ENSMUSG00000041343.20_4	chr7	-	3119	10	NNC	ENSMUSG00000041343.20	novel	3542	8	NA	NA	7	6943	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4.74796902649367	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATATATGCATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	92286303	92247201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_92247634_92253828_92254589_92259752_92259859_92261950_92262077_92263559_92263761_92268755_92268892_92273175_92273296_92274978_92275087_92280706_92280871_92285337
ENSMUSG00000041343.20_9	chr7	-	2692	9	ISM	ENSMUSG00000041343.20	ENSMUST00000118157.8	2782	12	43	20437	3	317	5prime_fragment	FALSE	canonical	2	4	junction_3	3.40725329260975	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGAGCCTCCGGGTAACT	NA	False	NA	NA	False	NA	NA	NA	92286307	92253827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_92254589_92259752_92259859_92261950_92262077_92263559_92263761_92268755_92268892_92273175_92273296_92274978_92275087_92280706_92280871_92285337
ENSMUSG00000041346.12_1	chr11	-	1811	10	FSM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	77	3	77	-3	multi-exon	FALSE	canonical	3	103	junction_6	29.7960143162773	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGAGTCATTGTGTCT	NA	False	NA	-7	True	TATAAA	-12	NA	69470073	69452587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
ENSMUSG00000041346.12_12	chr11	-	1898	9	NIC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	102	-1	intron_retention	FALSE	canonical	3	103	junction_5	30.2321745000256	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGAGTCATTGTGTCTGT	NA	False	NA	-5	True	TATAAA	-14	NA	69470048	69452585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
ENSMUSG00000041346.12_13	chr11	-	2041	8	NIC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	59	-3	intron_retention	FALSE	canonical	3	103	junction_4	28.9869780756667	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGAGTCATTGTGTCT	NA	False	NA	-7	True	TATAAA	-12	NA	69470091	69452587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69453086_69453219_69453324_69453474_69453684_69454129_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
ENSMUSG00000041346.12_14	chr11	-	1923	9	NIC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	67	-3	intron_retention	FALSE	canonical	3	103	junction_5	28.1236110768159	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGAGTCATTGTGTCT	NA	False	NA	-7	True	TATAAA	-12	NA	69470083	69452587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
ENSMUSG00000041346.12_4	chr11	-	979	6	ISM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	15643	1	241	-1	3prime_fragment	FALSE	canonical	3	116	junction_5	25.3092868330975	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGAGTCATTGTGTCTGT	NA	False	NA	-5	True	TATAAA	-14	NA	69454507	69452585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372
ENSMUSG00000041351.17_0	chr4	+	3264	24	NIC	ENSMUSG00000041351.17	novel	1216	11	NA	NA	7	-1	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	41.4733385102208	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCGGAGTTAAGAACAGC	3344	False	NA	9	True	AATAAA	-19	NA	137392043	137457170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137392156_137431384_137431479_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455539_137455675_137455838_137455880_137456185
ENSMUSG00000041351.17_11	chr4	+	3216	23	FSM	ENSMUSG00000041351.17	ENSMUST00000097837.11	3168	23	-49	1	-49	0	multi-exon	FALSE	canonical	3	26	junction_1	40.603123480388	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGGAGTTAAGAACAGCT	9901	False	NA	10	True	AATAAA	-20	NA	137434783	137457171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_137434972_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
ENSMUSG00000041351.17_14	chr4	+	3240	23	NIC	ENSMUSG00000041351.17	novel	3168	23	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	41.2645416392114	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGGAGTTAAGAACAGCT	9908	False	NA	10	True	AATAAA	-20	NA	137434790	137457171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137434972_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455539_137455675_137455838_137455880_137456185
ENSMUSG00000041351.17_2	chr4	+	3232	24	NIC	ENSMUSG00000041351.17	novel	1216	11	NA	NA	8	-1	combination_of_known_junctions	TRUE	canonical	3	20	junction_1	40.9493208845687	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCGGAGTTAAGAACAGC	3345	False	NA	9	True	AATAAA	-19	NA	137392044	137457170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137392156_137431384_137431479_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
ENSMUSG00000041351.17_23	chr4	+	1915	10	ISM	ENSMUSG00000041351.17	ENSMUST00000097837.11	3168	23	12412	1	1062	0	3prime_fragment	FALSE	canonical	3	83	junction_7	18.9326290948839	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGGAGTTAAGAACAGCT	NA	False	NA	10	True	AATAAA	-20	NA	137447244	137457171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
ENSMUSG00000041351.17_28	chr4	+	1945	10	NIC	ENSMUSG00000041351.17	novel	3168	23	NA	NA	1062	-1	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	31.0304509939654	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCGGAGTTAAGAACAGC	NA	False	NA	9	True	AATAAA	-19	NA	137447244	137457170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455539_137455675_137455838_137455880_137456185
ENSMUSG00000041351.17_31	chr4	+	2410	9	NIC	ENSMUSG00000041351.17	novel	3247	25	NA	NA	1047	0	intron_retention	FALSE	canonical	3	96	junction_1	15.0893174133226	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGGAGTTAAGAACAGCT	NA	False	NA	10	True	AATAAA	-20	NA	137447229	137457171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455675_137455838_137455880_137456185
ENSMUSG00000041351.17_48	chr4	+	3258	25	NIC	ENSMUSG00000041351.17	novel	1216	11	NA	NA	-14	-5	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	42.7395008224892	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGTACCCGGAGTTAAGAA	3351	False	NA	5	True	AATAAA	-15	NA	137392050	137457166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137392156_137410771_137410808_137431384_137431479_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
ENSMUSG00000041353.13_1	chrX	-	464	3	FSM	ENSMUSG00000041353.13	ENSMUST00000151067.8	864	3	4	396	0	-145	multi-exon	FALSE	canonical	0	0	junction_2	131	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCAGTCTTGGCTTTTGT	NA	False	NA	NA	False	TATAAA	-19	NA	149242146	149192311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149192597_149203337_149203438_149242067
ENSMUSG00000041353.13_2	chrX	-	685	3	FSM	ENSMUSG00000041353.13	ENSMUST00000148968.8	1316	3	4	627	0	-34	multi-exon	FALSE	canonical	3	95	junction_2	83.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTTCTGTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	149242146	149192200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149192597_149203337_149203438_149241957
ENSMUSG00000041353.13_3	chrX	-	1278	3	FSM	ENSMUSG00000041353.13	ENSMUST00000163233.2	1256	3	-22	0	-22	0	multi-exon	FALSE	canonical	3	16	junction_2	123	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATATCTGACTTGAGA	NA	False	NA	NA	False	GATAAA	-15	NA	149223923	149191579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149192597_149203337_149203438_149223762
ENSMUSG00000041353.13_6	chrX	-	1150	3	FSM	ENSMUSG00000041353.13	ENSMUST00000141948.8	1250	3	98	2	98	-2	multi-exon	FALSE	canonical	3	12	junction_2	125	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATCTGACTTGAGAGGTA	NA	False	NA	NA	False	GATAAA	-19	NA	149224004	149191575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149192597_149203337_149203438_149223975
ENSMUSG00000041354.17_2	chr17	+	2936	18	FSM	ENSMUSG00000041354.17	ENSMUST00000047503.16	3252	18	313	3	-9	-3	multi-exon	FALSE	canonical	3	51	junction_2	23.5177912481234	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCCTGTCCCCATCCTTC	3547	False	NA	9	True	AATAAA	-15	NA	34148868	34156658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34149019_34149218_34149416_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
ENSMUSG00000041354.17_44	chr17	+	2745	17	NIC	ENSMUSG00000041354.17	novel	943	8	NA	NA	6	-4	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	27.6331294599435	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTGTCCCCATCCTT	4566	False	NA	8	True	AATAAA	-14	NA	34149887	34156657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_34150045_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
ENSMUSG00000041354.17_59	chr17	+	3721	14	NIC	ENSMUSG00000041354.17	novel	3252	18	NA	NA	-129	-2	intron_retention	FALSE	canonical	3	99	junction_4	12.3838986892482	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGTCCCCATCCTTCA	4734	False	NA	10	True	AATAAA	-16	NA	34150055	34156659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_34151193_34151294_34151346_34151427_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
ENSMUSG00000041354.17_8	chr17	+	3542	17	NIC	ENSMUSG00000041354.17	novel	3252	18	NA	NA	2	-4	intron_retention	FALSE	canonical	3	51	junction_2	22.9910818307882	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTGTCCCCATCCTT	3197	False	NA	8	True	AATAAA	-14	NA	34148518	34156657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_34149019_34149218_34149416_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
ENSMUSG00000041355.14_28	chr3	+	1019	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	34	6	1	-6	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	1513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCGATGTGTTTGTCTTG	3591	False	NA	9	True	AATAAA	-11	NA	88486948	88495720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUSG00000041355.14_4	chr3	+	1036	5	FSM	ENSMUSG00000041355.14	ENSMUST00000035785.9	1189	5	147	6	147	-6	multi-exon	FALSE	canonical	3	4285	junction_2	286.022180083993	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCGATGTGTTTGTCTTG	3767	False	NA	9	True	AATAAA	-11	NA	88487124	88495720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUSG00000041359.15_0	chr12	-	1300	3	FSM	ENSMUSG00000041359.15	ENSMUST00000101071.4	1299	3	-1	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_1	973.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTTCTCGTGCTCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	105188976	105183016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_105183961_105184917_105185089_105188791
ENSMUSG00000041359.15_1	chr12	-	1257	4	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	917.824601980139	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTTCTCGTGCTCTTGG	NA	False	NA	-9	True	AATAAA	-16	NA	105188976	105183015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_105183321_105183364_105183961_105184917_105185089_105188791
ENSMUSG00000041359.15_2	chr12	-	1371	4	FSM	ENSMUSG00000041359.15	ENSMUST00000041316.15	1398	4	20	7	-1	1	multi-exon	FALSE	canonical	0	0	junction_2	814.330945555238	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTTCTCGTGCTCTTGG	NA	False	NA	-9	True	AATAAA	-16	NA	105188976	105183015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_105183961_105184481_105184552_105184917_105185089_105188791
ENSMUSG00000041359.15_4	chr12	-	1327	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	850.691777320082	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTTCTCGTGCTCTTGG	NA	False	NA	-9	True	AATAAA	-16	NA	105188976	105183015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_105183321_105183364_105183961_105184481_105184552_105184917_105185089_105188791
ENSMUSG00000041360.9_1	chr19	-	2118	18	FSM	ENSMUSG00000041360.9	ENSMUST00000076219.6	3471	18	-10	1363	-10	0	multi-exon	FALSE	canonical	3	1256	junction_17	93.320929312512	1825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACCTTTGGTTTAA	NA	False	NA	-17	True	TATAAA	-10	NA	27407235	27367460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
ENSMUSG00000041360.9_2	chr19	-	2075	17	ISM	ENSMUSG00000041360.9	ENSMUST00000076219.6	3471	18	2696	1363	-20	0	3prime_fragment	TRUE	canonical	3	1425	junction_9	73.1752765198055	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACCTTTGGTTTAA	NA	False	NA	-17	True	TATAAA	-10	NA	27404529	27367460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436
ENSMUSG00000041361.14_0	chr9	-	2285	13	FSM	ENSMUSG00000041361.14	ENSMUST00000093823.8	2283	13	-5	3	-5	-3	multi-exon	FALSE	canonical	0	0	junction_2	1.32024829314624	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTAGTAGTGTCTCTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	71499647	71411631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_71412512_71422350_71422452_71432063_71432148_71453950_71454057_71456005_71456086_71457460_71457590_71459520_71459647_71462866_71463020_71466129_71466244_71468236_71468330_71471691_71471848_71486892_71486980_71499471
ENSMUSG00000041362.18_0	chr19	-	3630	17	FSM	ENSMUSG00000041362.18	ENSMUST00000047511.15	3974	17	481	-137	450	-3	multi-exon	FALSE	canonical	1	1	junction_15	2.31081019341702	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTAAGGGTCCGCTGTGG	NA	False	NA	NA	False	ATTAAA	-20	NA	59064051	58961790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_58963641_58978620_58978814_58983449_58983571_58988324_58988379_58992271_58992382_58998196_58998280_59003958_59004059_59007236_59007391_59010607_59010755_59016586_59016682_59020604_59020687_59023475_59023574_59026653_59026823_59030293_59030389_59039265_59039327_59049062_59049116_59063886
ENSMUSG00000041372.11_0	chr6	-	3539	5	ISM	ENSMUSG00000041372.11	ENSMUST00000125341.2	3610	20	33385	-2313	33385	2313	3prime_fragment	FALSE	canonical	3	65	junction_1	4.94974746830583	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATTAATGTGTTTCA	2256	False	NA	-9	True	NA	NA	NA	120186219	120177720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_120180880_120183439_120183567_120184083_120184238_120185866_120185940_120186193
ENSMUSG00000041372.11_2	chr6	-	4358	7	ISM	ENSMUSG00000041372.11	ENSMUST00000125341.2	3610	20	27523	-2313	27523	2313	3prime_fragment	FALSE	canonical	3	55	junction_5	7.83156008298049	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATTAATGTGTTTCA	NA	False	NA	-9	True	NA	NA	NA	120192081	120177720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_120180880_120183439_120183567_120184083_120184238_120185866_120185940_120186193_120186348_120187052_120187370_120191707
ENSMUSG00000041372.11_3	chr6	-	5085	20	FSM	ENSMUSG00000041372.11	ENSMUST00000212457.2	2958	20	-340	-1787	-340	1050	multi-exon	FALSE	canonical	3	34	junction_7	11.0924096230953	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAAGCGGCTGTTTCCT	NA	False	NA	NA	False	ATTAAA	-14	NA	120271860	120178983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_120180880_120183439_120183567_120184083_120184238_120185866_120185940_120186193_120186348_120187052_120187370_120191707_120192462_120193234_120193297_120193516_120193618_120194416_120194527_120195828_120195973_120199024_120199092_120199233_120199313_120200561_120200630_120201036_120201138_120201505_120201597_120202053_120202150_120208474_120208553_120209848_120209953_120271351
ENSMUSG00000041372.11_4	chr6	-	2560	6	ISM	ENSMUSG00000041372.11	ENSMUST00000125341.2	3610	20	32394	-1048	32394	1048	3prime_fragment	FALSE	canonical	3	55	junction_5	8.45221864364617	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACAAGCGGCTGTTTC	1265	False	NA	NA	False	ATTAAA	-12	NA	120187210	120178985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_120180880_120183439_120183567_120184083_120184238_120185866_120185940_120186193_120186348_120187052
ENSMUSG00000041372.11_45	chr6	-	3900	19	ISM	ENSMUSG00000041372.11	ENSMUST00000212457.2	2958	20	-385	2003	-385	-2003	5prime_fragment	FALSE	canonical	3	34	junction_6	11.3747880186461	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACAGGGGTAGGGTGTG	NA	False	NA	NA	False	ATTAAA	-37	NA	120271905	120182773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_120183567_120184083_120184238_120185866_120185940_120186193_120186348_120187052_120187370_120191707_120192462_120193234_120193297_120193516_120193618_120194416_120194527_120195828_120195973_120199024_120199092_120199233_120199313_120200561_120200630_120201036_120201138_120201505_120201597_120202053_120202150_120208474_120208553_120209848_120209953_120271351
ENSMUSG00000041372.11_5	chr6	-	3251	2	ISM	ENSMUSG00000041372.11	ENSMUST00000125341.2	3610	20	36073	-2313	36073	2313	3prime_fragment	FALSE	canonical	3	65	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATTAATGTGTTTCA	4944	False	NA	-9	True	NA	NA	NA	120183531	120177720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_120180880_120183439
ENSMUSG00000041372.11_6	chr6	-	5089	20	FSM	ENSMUSG00000041372.11	ENSMUST00000057283.8	3677	20	-341	-1071	-341	1050	multi-exon	FALSE	canonical	3	28	junction_7	11.9409906464132	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAAGCGGCTGTTTCCT	NA	False	NA	NA	False	ATTAAA	-14	NA	120271861	120178983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_120180880_120183439_120183567_120184083_120184238_120185866_120185940_120186193_120186348_120187052_120187370_120191707_120192465_120193234_120193297_120193516_120193618_120194416_120194527_120195828_120195973_120199024_120199092_120199233_120199313_120200561_120200630_120201036_120201138_120201505_120201597_120202053_120202150_120208474_120208553_120209848_120209953_120271351
ENSMUSG00000041375.19_0	chr7	-	2148	14	FSM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	28	-1	11	1	multi-exon	FALSE	canonical	3	30	junction_1	66.2157134678708	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTGAACTGTGCTGCT	NA	False	NA	-7	True	ATTAAA	-15	NA	16020687	16007968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_16008342_16009180_16009301_16009662_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ENSMUSG00000041375.19_12	chr7	-	2154	14	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	8	1	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	68.79796336603	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTGAACTGTGCTGCT	NA	False	NA	-7	True	ATTAAA	-15	NA	16020690	16007968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_16008342_16009180_16009301_16009662_16010036_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ENSMUSG00000041375.19_23	chr7	-	1920	12	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	11	1	combination_of_known_junctions	FALSE	canonical	3	100	junction_1	37.3980155923805	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACACCCACCCCACTG	NA	False	NA	-13	True	AATAAA	-15	NA	16020687	16009400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_16010036_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ENSMUSG00000041375.19_24	chr7	-	1918	12	ISM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	27	1431	10	1	5prime_fragment	FALSE	canonical	3	130	junction_1	29.1238449918179	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACACCCACCCCACTG	NA	False	NA	-13	True	AATAAA	-15	NA	16020688	16009400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ENSMUSG00000041378.3_0	chr16	+	1412	1	FSM	ENSMUSG00000041378.3	ENSMUST00000043577.3	1416	1	2	2	2	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTGTCCTGTCCTCTGT	NA	False	NA	NA	False	AGTAAA	-17	NA	18595598	18597010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18595600_18597000
ENSMUSG00000041390.19_1	chr6	+	3384	5	FSM	ENSMUSG00000041390.19	ENSMUST00000101663.10	3431	5	43	4	1	-4	multi-exon	FALSE	canonical	3	76	junction_1	30.3016088681773	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGACTGTGCTTTAAGA	2	True	NA	4	True	ATTAAA	-12	NA	15720702	15802160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_15720963_15721185_15721364_15740986_15741110_15770212_15770492_15799616
ENSMUSG00000041390.19_10	chr6	+	3465	3	ISM	ENSMUSG00000041390.19	ENSMUST00000125326.8	3635	4	390	3	24	-3	3prime_fragment	FALSE	canonical	3	115	junction_1	19.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	-41	True	NA	NA	False	NA	NA	NA	15721109	15773300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_15721364_15740986_15741110_15770212
ENSMUSG00000041390.19_12	chr6	+	3364	5	NIC	ENSMUSG00000041390.19	novel	3431	5	NA	NA	22	-4	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	70.0892288443809	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGACTGTGCTTTAAGA	-43	True	NA	4	True	ATTAAA	-12	NA	15721107	15802160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_15721364_15731582_15731745_15740986_15741110_15770212_15770492_15799616
ENSMUSG00000041390.19_16	chr6	+	1619	1	ISM	ENSMUSG00000041390.19	ENSMUST00000101663.10	3431	5	79882	4	72744	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGACTGTGCTTTAAGA	1060	False	NA	4	True	ATTAAA	-12	NA	15800541	15802160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_15800500_15802200
ENSMUSG00000041390.19_2	chr6	+	3643	4	FSM	ENSMUSG00000041390.19	ENSMUST00000125326.8	3635	4	-11	3	7	-3	multi-exon	FALSE	canonical	3	76	junction_1	31.8433666561813	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	8	True	NA	NA	False	NA	NA	NA	15720708	15773300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_15720963_15721185_15721364_15740986_15741110_15770212
ENSMUSG00000041390.19_9	chr6	+	3207	4	FSM	ENSMUSG00000041390.19	ENSMUST00000120512.8	1871	4	17	-1353	17	-4	multi-exon	FALSE	canonical	3	115	junction_1	16.539514973407	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGACTGTGCTTTAAGA	106	False	NA	4	True	ATTAAA	-12	NA	15721102	15802160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_15721364_15740986_15741110_15770212_15770492_15799616
ENSMUSG00000041396.14_0	chr1	+	1411	2	FSM	ENSMUSG00000041396.14	ENSMUST00000111490.2	1419	2	4	4	4	-4	multi-exon	FALSE	canonical	3	75	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTGTGACTGTTCAAT	NA	False	NA	5	True	AATAAA	-12	NA	163822461	163824808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_163822547_163823482
ENSMUSG00000041396.14_1	chr1	+	1492	2	FSM	ENSMUSG00000041396.14	ENSMUST00000045694.14	1513	2	17	4	17	-4	multi-exon	FALSE	canonical	3	49	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTGTGACTGTTCAAT	NA	False	NA	5	True	AATAAA	-12	NA	163822474	163824808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_163822641_163823482
ENSMUSG00000041396.14_4	chr1	+	1249	1	ISM	ENSMUSG00000041396.14	ENSMUST00000045694.14	1513	2	1102	4	1102	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTGTGACTGTTCAAT	NA	False	NA	5	True	AATAAA	-12	NA	163823559	163824808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_163823600_163824800
ENSMUSG00000041406.15_4	chr1	-	2903	24	FSM	ENSMUSG00000041406.15	ENSMUST00000045876.8	3179	24	18	258	-14	-258	multi-exon	TRUE	canonical	2	170	junction_8	40.7878461455702	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATAATCTTTATTTGA	NA	False	NA	NA	False	CATAAA	-17	NA	163822347	163781580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163818288_163818329_163822178
ENSMUSG00000041408.19_1	chr14	+	6360	19	FSM	ENSMUSG00000041408.19	ENSMUST00000048263.14	6351	19	-17	8	-17	-8	multi-exon	FALSE	canonical	3	756	junction_1	98.1423286185256	1478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATACACACGTTGTCTTT	NA	False	NA	6	True	AATAAA	-11	NA	34395867	34469932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_34396318_34398910_34399432_34413638_34414692_34416943_34417063_34444220_34444317_34446662_34446816_34447084_34447222_34447856_34447969_34451136_34451365_34452505_34452618_34453465_34453567_34455687_34455765_34458626_34458803_34459227_34459344_34459812_34459978_34461187_34461396_34463013_34463103_34466765_34466862_34467581
ENSMUSG00000041408.19_102	chr14	+	4993	17	ISM	ENSMUSG00000041408.19	ENSMUST00000048263.14	6351	19	18151	7	-2258	-7	3prime_fragment	FALSE	canonical	3	770	junction_1	83.176746111819	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACACACGTTGTCTTTA	NA	False	NA	7	True	AATAAA	-12	NA	34414035	34469933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_34414692_34416943_34417063_34444220_34444317_34446662_34446816_34447084_34447222_34447856_34447969_34451136_34451365_34452505_34452618_34453465_34453567_34455687_34455765_34458626_34458803_34459227_34459344_34459812_34459978_34461187_34461396_34463013_34463103_34466765_34466862_34467581
ENSMUSG00000041408.19_135	chr14	+	1607	1	ISM	ENSMUSG00000041408.19	ENSMUST00000048263.14	6351	19	72442	7	9099	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACACACGTTGTCTTTA	NA	False	NA	7	True	AATAAA	-12	NA	34468326	34469933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_34468300_34469900
ENSMUSG00000041408.19_3	chr14	+	4590	19	FSM	ENSMUSG00000041408.19	ENSMUST00000090027.11	4185	19	-262	-143	-17	4	multi-exon	FALSE	canonical	3	148	junction_3	211.44655367664	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTGTTGTTCCCTGAAC	NA	False	NA	13	True	AATAAA	-25	NA	34395867	34468180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_34396318_34398910_34399432_34413638_34414692_34416961_34417063_34444220_34444317_34446662_34446816_34447084_34447222_34447856_34447969_34451136_34451365_34452505_34452618_34453465_34453567_34455687_34455765_34458626_34458803_34459227_34459344_34459812_34459978_34461187_34461396_34463013_34463103_34466765_34466862_34467581
ENSMUSG00000041415.11_0	chr12	-	5780	7	ISM	ENSMUSG00000041415.12	ENSMUST00000222528.2	4724	21	19420	-3683	-2130	-3	3prime_fragment	FALSE	canonical	3	246	junction_5	33.943171461855	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACACTGTGTCTTTAGCTT	NA	False	NA	-11	True	AATAAA	-13	NA	104668891	104654003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_104658018_104658385_104658462_104658561_104658725_104660736_104661006_104662532_104663404_104666623_104666780_104668660
ENSMUSG00000041415.11_1	chr12	-	6438	29	NIC	ENSMUSG00000041415.12	novel	9851	27	NA	NA	-122	2	combination_of_known_junctions	FALSE	canonical	3	188	junction_19	35.6787501783024	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTCTTTGGAACTAAT	4288	False	NA	-39	True	AATAAA	-16	NA	104718333	104657699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_104658018_104658385_104658462_104658561_104658725_104660736_104661006_104662532_104663404_104666623_104666780_104668660_104669442_104670324_104670501_104670977_104671084_104671311_104671495_104672471_104672626_104672809_104673024_104673111_104673292_104675034_104675175_104676043_104676120_104676883_104677017_104678439_104678595_104679253_104679497_104681032_104681166_104688229_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104704027_104704126_104705041_104705108_104718006
ENSMUSG00000041415.11_27	chr12	-	6256	27	FSM	ENSMUSG00000041415.12	ENSMUST00000041987.8	9851	27	-104	3699	-104	2	multi-exon	FALSE	canonical	3	28	junction_26	55.5751530194573	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTCTTTGGAACTAAT	4306	False	NA	-39	True	AATAAA	-16	NA	104718315	104657699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_104658018_104658385_104658462_104658561_104658725_104660736_104661006_104662532_104663404_104666623_104666780_104668660_104669442_104670324_104670501_104670977_104671084_104671311_104671495_104672471_104672626_104672809_104673024_104673111_104673292_104675034_104675175_104676043_104676120_104676883_104677017_104678439_104678595_104679253_104679497_104681032_104681166_104688229_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104718006
ENSMUSG00000041415.11_5	chr12	-	6337	28	NIC	ENSMUSG00000041415.12	novel	9851	27	NA	NA	-119	2	combination_of_known_junctions	FALSE	canonical	3	34	junction_26	53.666423842203	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTCTTTGGAACTAAT	4291	False	NA	-39	True	AATAAA	-16	NA	104718330	104657699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_104658018_104658385_104658462_104658561_104658725_104660736_104661006_104662532_104663404_104666623_104666780_104668660_104669442_104670324_104670501_104670977_104671084_104671311_104671495_104672471_104672626_104672809_104673024_104673111_104673292_104675034_104675175_104676043_104676120_104676883_104677017_104678439_104678595_104679253_104679497_104681032_104681166_104688229_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104705041_104705108_104718006
ENSMUSG00000041415.11_7	chr12	-	3156	1	ISM	ENSMUSG00000041415.12	ENSMUST00000041987.8	9851	27	61054	1	3668	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGTCTTTAGCTTTG	NA	False	NA	-9	True	AATAAA	-15	NA	104657157	104654001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_104654000_104657200
ENSMUSG00000041415.11_8	chr12	-	5237	5	ISM	ENSMUSG00000041415.12	ENSMUST00000222115.2	2543	6	3514	-3698	-2422	-3	3prime_fragment	FALSE	canonical	3	284	junction_4	24.7184141886165	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACACTGTGTCTTTAGCTT	NA	False	NA	-11	True	AATAAA	-13	NA	104663247	104654003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_104658018_104658385_104658462_104658561_104658725_104660736_104661006_104662532
ENSMUSG00000041417.16_0	chr13	-	2460	1	ISM	ENSMUSG00000041417.16	ENSMUST00000055518.13	7113	16	84987	208	9113	-208	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTTAAAAGTTTCCATTT	NA	False	NA	-21	True	AATAAA	-11	NA	101819738	101817278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_101817300_101819700
ENSMUSG00000041417.16_3	chr13	-	3950	16	FSM	ENSMUSG00000041417.16	ENSMUST00000055518.13	7113	16	25	3138	21	-37	multi-exon	FALSE	canonical	2	8	junction_10	7.37443029814658	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAGAGAAAAAGAAA	NA	False	NA	NA	False	ACTAAA	-42	NA	101904700	101820208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_101821578_101822715_101822887_101823480_101823550_101823638_101823816_101824008_101824152_101825140_101825267_101825486_101825668_101825906_101826006_101826988_101827092_101837954_101838035_101838218_101838421_101839216_101839349_101845427_101845503_101846157_101846251_101893833_101894548_101904484
ENSMUSG00000041420.19_1	chr7	+	1826	13	FSM	ENSMUSG00000041420.19	ENSMUST00000176506.8	1839	13	3	10	3	-7	multi-exon	FALSE	canonical	1	1	junction_5	5.65439848456246	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGCAAATCAAAATTCT	7542	False	NA	NA	False	AATAAA	-7	NA	15909202	15920419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912926_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919447_15919981
ENSMUSG00000041420.19_2	chr7	+	2023	12	FSM	ENSMUSG00000041420.19	ENSMUST00000175946.8	1925	12	-98	0	15	0	multi-exon	FALSE	canonical	3	10	junction_3	3.73723723474445	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAAAATTCTCATTTGT	7554	False	NA	NA	False	AATAAA	-14	NA	15909214	15920426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
ENSMUSG00000041420.19_3	chr7	+	1760	13	FSM	ENSMUSG00000041420.19	ENSMUST00000002495.18	1731	13	-39	10	3	-7	multi-exon	FALSE	canonical	3	8	junction_5	4.17997873466148	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGCAAATCAAAATTCT	7655	False	NA	NA	False	AATAAA	-7	NA	15909315	15920419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912875_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
ENSMUSG00000041420.19_4	chr7	+	1733	13	NIC	ENSMUSG00000041420.19	novel	1839	13	NA	NA	-21	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	5.43841786633658	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGCAAATCAAAATTCT	7631	False	NA	NA	False	AATAAA	-7	NA	15909291	15920419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912926_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
ENSMUSG00000041423.17_9	chr3	+	3963	1	Genic_Genomic	ENSMUSG00000041423.17	novel	NA	NA	NA	NA	-7	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTAGCTCTCTGGGATT	NA	False	NA	NA	False	AATAAA	-16	NA	88271883	88275846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_+_88271900_88275800
ENSMUSG00000041426.13_0	chr1	+	1705	14	FSM	ENSMUSG00000041426.13	ENSMUST00000044478.7	1830	14	-1	126	1	-121	multi-exon	FALSE	canonical	3	80	junction_5	8.39836557781919	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGGGTGTGTTGATGCCT	NA	False	NA	5	True	AATAAA	-15	NA	52884203	52960019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52952889_52953010_52955795_52955830_52959421
ENSMUSG00000041426.13_12	chr1	+	1600	13	ISM	ENSMUSG00000041426.13	ENSMUST00000044478.7	1830	14	8620	133	1898	-128	3prime_fragment	FALSE	canonical	3	80	junction_4	7.83156008298049	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGGAGGGGGTGTGTT	NA	False	NA	-2	True	AATAAA	-8	NA	52892824	52960012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52952889_52953010_52955795_52955830_52959421
ENSMUSG00000041426.13_8	chr1	+	1550	12	FSM	ENSMUSG00000041426.13	ENSMUST00000159352.8	1704	12	33	121	0	-121	multi-exon	FALSE	canonical	0	0	junction_11	29.0121091845947	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGGGTGTGTTGATGCCT	NA	False	NA	5	True	AATAAA	-15	NA	52884204	52960019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52959421
ENSMUSG00000041429.4_1	chr17	+	1065	6	FSM	ENSMUSG00000041429.4	ENSMUST00000047611.4	1079	6	12	2	12	-1	multi-exon	FALSE	canonical	3	194	junction_2	26.3772629360971	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATTTCTTGGCCCGTTGGC	920	False	NA	9	True	AATAAA	-21	NA	24851667	24857809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24851829_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ENSMUSG00000041429.4_10	chr17	+	976	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234635.2	893	6	-32	-51	5	-6	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTGATTTCTTGGCCCG	913	False	NA	4	True	AATAAA	-16	NA	24851660	24857804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24851738_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ENSMUSG00000041429.4_11	chr17	+	903	5	NIC	ENSMUSG00000041429.4	novel	1079	6	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	98.3142283700584	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGGCCCGTTGGCTT	913	False	NA	11	True	AATAAA	-23	NA	24851660	24857811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24851829_24852900_24853140_24854561_24854722_24857397_24857504_24857581
ENSMUSG00000041429.4_13	chr17	+	3386	3	NIC	ENSMUSG00000041429.4	novel	2084	6	NA	NA	9	-6	intron_retention	FALSE	canonical	3	232	junction_1	18.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTGATTTCTTGGCCCG	917	False	NA	4	True	AATAAA	-16	NA	24851664	24857804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24854722_24857397_24857504_24857581
ENSMUSG00000041429.4_2	chr17	+	2071	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234308.2	2084	6	7	6	5	-6	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTGATTTCTTGGCCCG	913	False	NA	4	True	AATAAA	-16	NA	24851660	24857804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24852833_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ENSMUSG00000041429.4_5	chr17	+	2963	2	FSM	ENSMUSG00000041429.4	ENSMUST00000234888.2	583	2	-2386	6	-2386	-6	multi-exon	FALSE	canonical	3	269	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTGATTTCTTGGCCCG	4016	False	NA	4	True	AATAAA	-16	NA	24854763	24857804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24857504_24857581
ENSMUSG00000041429.4_6	chr17	+	3324	4	NIC	ENSMUSG00000041429.4	novel	2084	6	NA	NA	5	-4	intron_retention	FALSE	canonical	3	27	junction_1	106.436209377574	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGATTTCTTGGCCCGTT	913	False	NA	6	True	AATAAA	-18	NA	24851660	24857806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24852833_24852900_24854722_24857397_24857504_24857581
ENSMUSG00000041429.4_9	chr17	+	2318	4	NIC	ENSMUSG00000041429.4	novel	1079	6	NA	NA	5	-6	intron_retention	FALSE	canonical	3	202	junction_1	27.4023518860861	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTGATTTCTTGGCCCG	913	False	NA	4	True	AATAAA	-16	NA	24851660	24857804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24851829_24852900_24854722_24857397_24857504_24857581
ENSMUSG00000041431.17_0	chr13	-	2320	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	72	97	-12	0	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	4297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTTTCACAATTCTCAT	NA	False	NA	-21	True	AATAAA	-13	NA	100923006	100915254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
ENSMUSG00000041438.9_1	chr8	+	2221	17	FSM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	10	1	10	0	multi-exon	TRUE	canonical	3	1046	junction_1	100.936996902771	1492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACTAGACATTTTAAATT	NA	False	NA	11	True	AATAAA	-16	NA	107620292	107649719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
ENSMUSG00000041438.9_42	chr8	+	2171	16	ISM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	938	1	0	0	3prime_fragment	FALSE	canonical	3	1116	junction_3	91.8083995189014	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACTAGACATTTTAAATT	NA	False	NA	11	True	AATAAA	-16	NA	107621220	107649719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
ENSMUSG00000041439.16_1	chr1	-	4794	7	FSM	ENSMUSG00000041439.16	ENSMUST00000156876.8	4932	7	113	25	9	-25	multi-exon	FALSE	canonical	2	6	junction_6	2.05480466765633	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAACTTGATTTGAGAA	NA	False	NA	-24	True	NA	NA	NA	52766508	52695469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_52697705_52699965_52700247_52701548_52701648_52702443_52702606_52715636_52715735_52747322_52748915_52766181
ENSMUSG00000041439.16_4	chr1	-	4049	6	ISM	ENSMUSG00000041439.16	ENSMUST00000156876.8	4932	7	18125	25	-142	-25	3prime_fragment	TRUE	canonical	2	8	junction_3	1.35646599662505	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAACTTGATTTGAGAA	NA	False	NA	-24	True	NA	NA	NA	52748496	52695469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_52697705_52699965_52700247_52701548_52701648_52702443_52702606_52715636_52715735_52747322
ENSMUSG00000041440.19_0	chr9	+	7193	16	FSM	ENSMUSG00000041440.19	ENSMUST00000085217.12	2815	16	27	-4405	14	-13	multi-exon	FALSE	canonical	3	48	junction_1	8.15843122174846	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGCAATAGAAATACTTTT	NA	False	NA	4	True	AATAAA	-14	NA	96001441	96066648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_96001666_96011053_96011148_96015441_96015518_96019797_96019892_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96053512_96053608_96056742_96056847_96058282_96058343_96059471_96059606_96060973
ENSMUSG00000041440.19_1	chr9	+	7042	14	NIC	ENSMUSG00000041440.19	novel	2506	16	NA	NA	5	-16	intron_retention	FALSE	canonical	0	0	junction_1	19.7490169031031	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCAGCAATAGAAATACT	NA	False	NA	1	True	AATAAA	-11	NA	96001419	96066645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_96001666_96019797_96019892_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96053512_96053608_96056742_96056847_96058282_96058343_96059471_96059606_96060973
ENSMUSG00000041440.19_17	chr9	+	7092	12	ISM	ENSMUSG00000041440.19	ENSMUST00000122383.3	4455	17	20774	16	15929	-16	intron_retention	FALSE	canonical	3	61	junction_9	6.91267849440014	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCAGCAATAGAAATACT	NA	False	NA	1	True	AATAAA	-11	NA	96022201	96066645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96053512_96053608_96056742_96056847_96058282_96058343_96059471_96059606_96060973
ENSMUSG00000041440.19_25	chr9	+	3540	1	NIC	ENSMUSG00000041440.19	novel	4455	17	NA	NA	10142	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAATAGAAATACTTTTCA	NA	False	NA	6	True	AATAAA	-16	NA	96063110	96066650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_96063100_96066600
ENSMUSG00000041444.15_10	chr9	+	1007	1	ISM	ENSMUSG00000041444.15	ENSMUST00000174641.8	13568	22	144160	7144	15132	84	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCACTCATTACCGCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	32171591	32172598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_32171600_32172600
ENSMUSG00000041444.15_11	chr9	+	1746	1	ISM	ENSMUSG00000041444.15	ENSMUST00000174641.8	13568	22	146878	3687	17850	514	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAGACTTTGTGTATGT	NA	False	NA	9	True	NA	NA	NA	32174309	32176055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_32174300_32176100
ENSMUSG00000041444.15_2	chr9	+	6655	22	NNC	ENSMUSG00000041444.15	novel	540	6	NA	NA	-83755	79	at_least_one_novel_splicesite	TRUE	canonical	2	12	junction_1	7.18653313520513	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTCCCACTCATTACCG	NA	False	NA	NA	False	AATAAA	-16	NA	31943676	32172593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_31944029_32040865_32040975_32063217_32063310_32064335_32064421_32081385_32081473_32093137_32093276_32097624_32097718_32098929_32099053_32101279_32101358_32119479_32119562_32150557_32150708_32156447_32156551_32157213_32157359_32157742_32157826_32158403_32158512_32158781_32158928_32159675_32159872_32161937_32162084_32165362_32165435_32166469_32167355_32168008_32168995_32170197
ENSMUSG00000041444.15_8	chr9	+	4683	6	ISM	ENSMUSG00000041444.15	ENSMUST00000168954.9	8703	13	24129	2948	3214	79	3prime_fragment	FALSE	canonical	3	20	junction_3	5.5281099844341	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTCCCACTCATTACCG	119	False	NA	NA	False	AATAAA	-16	NA	32159673	32172593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_32159872_32161937_32162084_32165362_32165435_32166469_32167355_32168008_32168995_32170197
ENSMUSG00000041444.15_9	chr9	+	2825	2	ISM	ENSMUSG00000041444.15	ENSMUST00000168954.9	8703	13	33030	2939	12115	88	3prime_fragment	FALSE	canonical	3	36	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATTACCGCCTTATCCA	9020	False	NA	NA	False	AATAAA	-25	NA	32168574	32172602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_32168995_32170197
ENSMUSG00000041445.10_10	chr14	+	2138	2	ISM	ENSMUSG00000041445.10	ENSMUST00000111908.3	3974	7	23393	3	23137	-3	3prime_fragment	FALSE	canonical	3	70	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTCTGCCTGTTTACTG	NA	False	NA	3	True	AATAAA	-13	NA	34120814	34126241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_34121581_34124869
ENSMUSG00000041445.10_11	chr14	+	1186	1	ISM	ENSMUSG00000041445.10	ENSMUST00000111908.3	3974	7	27634	3	27378	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTCTGCCTGTTTACTG	NA	False	NA	3	True	AATAAA	-13	NA	34125055	34126241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_34125100_34126200
ENSMUSG00000041445.10_5	chr14	+	3912	7	FSM	ENSMUSG00000041445.10	ENSMUST00000111908.3	3974	7	58	4	58	-4	multi-exon	FALSE	canonical	3	26	junction_3	15.3260852434302	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGCTCTGCCTGTTTACT	4948	False	NA	2	True	AATAAA	-12	NA	34097479	34126240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_34097736_34118121_34118251_34118328_34118436_34118515_34118597_34119503_34119678_34119786_34121581_34124869
ENSMUSG00000041445.10_6	chr14	+	3876	7	NNC	ENSMUSG00000041445.10	novel	3974	7	NA	NA	3084	-3	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	20.0969870599771	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTCTGCCTGTTTACTG	8230	False	NA	3	True	AATAAA	-13	NA	34100761	34126241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_34100981_34118121_34118251_34118328_34118436_34118515_34118597_34119503_34119678_34119786_34121581_34124869
ENSMUSG00000041445.10_9	chr14	+	3288	3	ISM	ENSMUSG00000041445.10	ENSMUST00000111908.3	3974	7	22123	14	21867	-14	3prime_fragment	FALSE	canonical	3	33	junction_1	18.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATACTCTCCAAAGCTCTG	NA	False	NA	-8	True	AATAAA	-2	NA	34119544	34126230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_34119678_34119786_34121581_34124869
ENSMUSG00000041449.17_1	chr12	+	2044	5	NIC	ENSMUSG00000041449.17	novel	1226	4	NA	NA	-6	732	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	10.7325439668328	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAATGTGAGAGTGTTCA	NA	False	NA	6	True	AATAAA	-12	NA	104214157	104220660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_104214232_104216398_104217017_104217730_104218005_104218943_104219095_104219733
ENSMUSG00000041449.17_8	chr12	+	1690	4	FSM	ENSMUSG00000041449.17	ENSMUST00000116393.3	1226	4	268	-732	268	732	multi-exon	FALSE	canonical	3	40	junction_2	12.3917535302941	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAATGTGAGAGTGTTCA	2135	False	NA	6	True	AATAAA	-12	NA	104216678	104220660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_104217017_104217730_104218005_104218943_104219095_104219733
ENSMUSG00000041453.13_0	chr5	+	759	6	FSM	ENSMUSG00000041453.13	ENSMUST00000035983.12	1856	6	49	1048	49	-1	multi-exon	FALSE	canonical	3	6955	junction_1	2705.44403749181	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGAAGTGTTTTCCTT	NA	False	NA	0	True	AATAAA	-14	NA	146769748	146772794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_146769982_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041453.13_10	chr5	+	532	5	ISM	ENSMUSG00000041453.13	ENSMUST00000099272.3	1067	6	979	-1	-3	1	3prime_fragment	FALSE	canonical	3	8667	junction_4	2022.40209899021	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAAGTGTTTTCCTTAGA	NA	False	NA	3	True	AATAAA	-17	NA	146770990	146772797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041453.13_11	chr5	+	239	2	FSM	ENSMUSG00000041453.13	ENSMUST00000135345.2	632	2	391	2	391	-1	multi-exon	FALSE	canonical	3	8667	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGAAGTGTTTTCCTT	NA	False	NA	0	True	AATAAA	-14	NA	146772406	146772794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_146772525_146772673
ENSMUSG00000041453.13_8	chr5	+	1089	6	FSM	ENSMUSG00000041453.13	ENSMUST00000099272.3	1067	6	-24	2	-17	-1	multi-exon	FALSE	canonical	3	123	junction_1	5077.72757835629	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGAAGTGTTTTCCTT	NA	False	NA	0	True	AATAAA	-14	NA	146769987	146772794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_146770551_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041453.13_9	chr5	+	909	6	FSM	ENSMUSG00000041453.13	ENSMUST00000075453.9	899	6	-13	3	-13	-3	multi-exon	FALSE	canonical	3	51	junction_1	5104.64844626934	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACTGTGAAGTGTTTTCC	NA	False	NA	-2	True	AATAAA	-12	NA	146769991	146772792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_146770377_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041459.16_0	chr4	-	2733	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	255	4489	1	-8	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATATGTGTCTTTGTT	NA	False	NA	NA	False	AATAAA	-9	NA	148711221	148701327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_1	chr4	-	3961	1	ISM	ENSMUSG00000041459.16	ENSMUST00000165113.8	6495	7	10643	11	-215	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATATTGTGTGTTTGTAG	NA	False	NA	NA	False	ATTAAA	-9	NA	148700810	148696849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_148696800_148700800
ENSMUSG00000041459.16_11	chr4	-	1456	1	NIC	ENSMUSG00000041459.16	novel	6495	7	NA	NA	41	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATATGTGTCTTTGTT	NA	False	NA	NA	False	AATAAA	-9	NA	148702783	148701327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_148701300_148702800
ENSMUSG00000041459.16_19	chr4	-	2571	5	ISM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	1721	4489	64	-8	3prime_fragment	FALSE	canonical	3	1029	junction_2	39.2515923243886	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATATGTGTCTTTGTT	NA	False	NA	NA	False	AATAAA	-9	NA	148709755	148701327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581
ENSMUSG00000041459.16_2	chr4	-	1198	8	FSM	ENSMUSG00000041459.16	ENSMUST00000045180.14	2006	8	1	807	1	0	multi-exon	FALSE	canonical	3	205	junction_2	361.175800938647	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711221	148701182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148701302_148702022_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_21	chr4	-	1189	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	168	junction_2	371.00008251278	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711221	148701182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_148701302_148702022_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_6	chr4	-	2157	7	NIC	ENSMUSG00000041459.16	novel	1304	8	NA	NA	1	0	intron_retention	FALSE	canonical	3	409	junction_1	257.510949066033	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711221	148701182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_148701302_148702022_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041471.10_0	chr14	-	3479	11	FSM	ENSMUSG00000041471.10	ENSMUST00000111917.3	3317	11	-170	8	-43	-8	multi-exon	FALSE	canonical	3	23	junction_8	23.9376272842569	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTCTGTGAAGCT	NA	False	NA	-22	True	AATATA	-25	NA	34032493	33958997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33991427_33991494_34030996_34031052_34032123
ENSMUSG00000041471.10_1	chr14	-	3575	12	NIC	ENSMUSG00000041471.10	novel	3317	11	NA	NA	-49	-8	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	25.9930060523281	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTCTGTGAAGCT	NA	False	NA	-22	True	AATATA	-25	NA	34032499	33958997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33991427_33991494_33995443_33995534_34030996_34031052_34032123
ENSMUSG00000041471.10_12	chr14	-	1941	9	NIC	ENSMUSG00000041471.10	novel	3317	11	NA	NA	-23	-8	combination_of_known_splicesites	FALSE	canonical	2	5	junction_7	26.1745940751714	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTCTGTGAAGCT	NA	False	NA	-22	True	AATATA	-25	NA	34032473	33958997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_34030996_34031052_34032123
ENSMUSG00000041471.10_20	chr14	-	3335	4	NIC	ENSMUSG00000041471.10	novel	774	3	NA	NA	-32	-1	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	26.7332502076846	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAACCCATTTAATGTG	NA	False	NA	NA	False	NA	NA	NA	34032482	33988078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_33990910_33995443_33995534_34030996_34031052_34032123
ENSMUSG00000041471.10_3	chr14	-	3352	10	NIC	ENSMUSG00000041471.10	novel	3317	11	NA	NA	-24	-8	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	31.7587355533972	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTCTGTGAAGCT	NA	False	NA	-22	True	AATATA	-25	NA	34032474	33958997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33989457_33990910_33991427_33991494_34030996_34031052_34032123
ENSMUSG00000041471.10_4	chr14	-	3482	11	NIC	ENSMUSG00000041471.10	novel	3317	11	NA	NA	-22	-8	combination_of_known_junctions	FALSE	canonical	3	25	junction_8	20.0858158908221	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTCTGTGAAGCT	NA	False	NA	-22	True	AATATA	-25	NA	34032472	33958997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33995443_33995534_34030996_34031052_34032123
ENSMUSG00000041471.10_7	chr14	-	3373	10	NIC	ENSMUSG00000041471.10	novel	3317	11	NA	NA	-3	-8	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	24.9131825880731	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTCTGTGAAGCT	NA	False	NA	-22	True	AATATA	-25	NA	34032453	33958997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_34030996_34031052_34032123
ENSMUSG00000041477.15_0	chr6	+	1876	9	FSM	ENSMUSG00000041477.15	ENSMUST00000112777.9	3313	9	27	1410	-8	0	multi-exon	FALSE	canonical	3	31	junction_6	11.8684192291981	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTCTGGGGGTTTTGTT	NA	False	NA	9	True	AGTAAA	-16	NA	119152240	119197167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119192568_119194763_119194941_119196963
ENSMUSG00000041477.15_1	chr6	+	4075	8	NIC	ENSMUSG00000041477.15	novel	3313	9	NA	NA	-11	0	intron_retention	FALSE	canonical	3	31	junction_6	11.7038280847223	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTCTGGGGGTTTTGTT	NA	False	NA	9	True	AGTAAA	-16	NA	119152237	119197167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119194941_119196963
ENSMUSG00000041477.15_10	chr6	+	3407	2	FSM	ENSMUSG00000041477.15	ENSMUST00000127059.2	2048	2	-2767	1408	-2767	0	multi-exon	FALSE	canonical	3	71	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTCTGGGGGTTTTGTT	NA	False	NA	9	True	AGTAAA	-16	NA	119191737	119197167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_119194941_119196963
ENSMUSG00000041477.15_2	chr6	+	1953	9	NNC	ENSMUSG00000041477.15	novel	3313	9	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_7	15.8981130955846	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTCTGGGGGTTTTGTT	NA	False	NA	9	True	AGTAAA	-16	NA	119152232	119197167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119192568_119194694_119194941_119196963
ENSMUSG00000041477.15_3	chr6	+	1971	7	ISM	ENSMUSG00000041477.15	ENSMUST00000073909.6	1748	9	-13	4108	-13	1230	5prime_fragment	FALSE	canonical	3	31	junction_6	7.46100976186646	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGAAAAGATACTATTGT	NA	False	NA	NA	False	AGTAAA	-8	NA	119152235	119193038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730
ENSMUSG00000041483.15_28	chr1	+	3097	2	FSM	ENSMUSG00000041483.15	ENSMUST00000047734.15	4933	2	66	1770	66	-1770	multi-exon	FALSE	canonical	3	143	junction_1	0	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGTACAGAAAAAAAAAAAGA	NA	False	NA	NA	False	TTTAAA	-35	NA	136552704	136556021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_136552790_136553009
ENSMUSG00000041483.15_29	chr1	+	3727	1	ISM	ENSMUSG00000041483.15	ENSMUST00000047734.15	4933	2	1388	38	1388	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCAATAAAAGTCCTGTTA	NA	False	NA	-22	True	NA	NA	NA	136554026	136557753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_136554000_136557800
ENSMUSG00000041483.15_31	chr1	+	3100	2	FSM	ENSMUSG00000041483.15	ENSMUST00000112046.2	4937	2	67	1770	67	-1770	multi-exon	FALSE	canonical	3	71	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGTACAGAAAAAAAAAAAGA	NA	False	NA	NA	False	TTTAAA	-35	NA	136552705	136556021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_136552790_136553005
ENSMUSG00000041488.17_3	chr19	-	2652	12	NIC	ENSMUSG00000041488.17	novel	3068	12	NA	NA	18	-5	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	185.459046291195	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTAGTTGTTGGGTACTAG	7155	False	NA	-24	True	AATAAA	-14	NA	11796288	11752486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_11753953_11754451_11754535_11758930_11759045_11760389_11760501_11762753_11762889_11763048_11763123_11763888_11763998_11765532_11765601_11766920_11766996_11769109_11769210_11780857_11780942_11796055
ENSMUSG00000041488.17_4	chr19	-	1618	1	ISM	ENSMUSG00000041488.17	ENSMUST00000069285.6	2810	11	39834	6	3796	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGCTCTGGGGCCATC	2554	False	NA	-14	True	AATAAA	-19	NA	11756472	11754854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_11754900_11756500
ENSMUSG00000041488.17_7	chr19	-	1988	11	FSM	ENSMUSG00000041488.17	ENSMUST00000069285.6	2810	11	18	804	18	-804	multi-exon	FALSE	canonical	3	392	junction_5	58.7316779940774	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7155	False	NA	NA	False	NA	NA	NA	11796288	11755652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_11756538_11758930_11759045_11760389_11760501_11762753_11762889_11763048_11763123_11763888_11763998_11765532_11765601_11766920_11766996_11769109_11769210_11780857_11780942_11796055
ENSMUSG00000041491.9_2	chr19	-	2550	15	FSM	ENSMUSG00000041491.9	ENSMUST00000047704.8	2548	15	-2	0	-2	0	multi-exon	FALSE	canonical	3	141	junction_1	15.9123876785558	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATATTGAGTGATAAAAT	173	False	NA	NA	False	AATAAA	-16	NA	15962355	15933137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_15933768_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
ENSMUSG00000041491.9_21	chr19	-	3558	15	NIC	ENSMUSG00000041491.9	novel	2667	17	NA	NA	-5	-530	intron_retention	FALSE	canonical	3	12	junction_1	41.602651504981	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAATAAAAGTAAACA	186	False	NA	NA	False	NA	NA	NA	15962342	15933874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_15935526_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
ENSMUSG00000041491.9_6	chr19	-	2605	16	NIC	ENSMUSG00000041491.9	novel	2667	17	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	54.2496287749716	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATATTGAGTGATAAAAT	185	False	NA	NA	False	AATAAA	-16	NA	15962343	15933137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_15933768_15935458_15935526_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
ENSMUSG00000041491.9_7	chr19	-	2377	14	NIC	ENSMUSG00000041491.9	novel	2548	15	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	44.4826939288933	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATATTGAGTGATAAAAT	177	False	NA	NA	False	AATAAA	-16	NA	15962351	15933137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_15933768_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
ENSMUSG00000041491.9_9	chr19	-	2970	14	FSM	ENSMUSG00000041491.9	ENSMUST00000236749.2	2465	14	-298	-207	-2	0	multi-exon	FALSE	canonical	3	141	junction_1	15.7062532302438	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATATTGAGTGATAAAAT	173	False	NA	NA	False	AATAAA	-16	NA	15962355	15933137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_15933768_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
ENSMUSG00000041498.14_0	chr1	+	3731	21	NIC	ENSMUSG00000041498.14	novel	8943	29	NA	NA	29	7544	intron_retention	FALSE	canonical	3	49	junction_13	8.08006806902021	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATTAAAAAGCAAAACAA	NA	False	NA	NA	False	ATTAAA	-7	NA	136394109	136431198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_136394137_136395585_136396913_136399057_136399313_136401122_136401211_136404077_136404177_136406096_136406150_136406881_136406913_136407545_136407654_136410125_136410243_136410661_136410778_136414009_136414183_136414772_136414921_136415141_136415206_136417937_136418123_136422365_136422469_136423593_136423758_136424307_136424456_136425100_136425254_136427754_136427882_136430384_136430479_136431047
ENSMUSG00000041498.14_15	chr1	+	7095	29	FSM	ENSMUSG00000041498.14	ENSMUST00000189413.7	8943	29	-88	1936	-88	1929	multi-exon	FALSE	canonical	3	34	junction_22	10.1365045498829	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACCGCCTCCTAATCCA	NA	False	NA	22	True	AATAAA	-13	NA	136395584	136457313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_136396913_136399057_136399313_136401122_136401211_136404077_136404177_136406096_136406150_136406881_136406913_136407545_136407654_136410125_136410243_136410661_136410778_136414009_136414183_136414772_136414921_136415141_136415206_136417937_136418123_136422365_136422469_136423593_136423758_136424307_136424456_136425100_136425254_136427754_136427882_136430384_136430479_136431047_136431178_136437882_136437984_136441471_136441561_136443591_136443817_136443997_136444180_136447366_136447523_136448927_136449048_136453519_136453595_136454512_136454646_136454983
ENSMUSG00000041498.14_17	chr1	+	3711	20	ISM	ENSMUSG00000041498.14	ENSMUST00000189413.7	8943	29	-88	28045	-88	7550	5prime_fragment	FALSE	canonical	3	49	junction_12	7.93114412247141	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGCAAAACAAATTTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	136395584	136431204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_136396913_136399057_136399313_136401122_136401211_136404077_136404177_136406096_136406150_136406881_136406913_136407545_136407654_136410125_136410243_136410661_136410778_136414009_136414183_136414772_136414921_136415141_136415206_136417937_136418123_136422365_136422469_136423593_136423758_136424307_136424456_136425100_136425254_136427754_136427882_136430384_136430479_136431047
ENSMUSG00000041498.14_2	chr1	+	7072	31	NNC	ENSMUSG00000041498.14	novel	8770	30	NA	NA	29	1930	intron_retention	TRUE	non_canonical	0	0	junction_30	14.112602720815	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCGCCTCCTAATCCAG	NA	False	NA	23	True	AATAAA	-14	NA	136394109	136457314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_136394137_136395585_136396913_136399057_136399313_136401122_136401211_136404077_136404177_136406096_136406150_136406881_136406913_136407545_136407654_136410125_136410243_136410661_136410778_136414009_136414183_136414772_136414921_136415141_136415206_136417937_136418123_136422365_136422469_136423593_136423758_136424307_136424456_136425100_136425254_136427754_136427882_136430384_136430479_136431047_136431178_136437882_136437984_136441471_136441561_136443591_136443817_136443997_136444180_136447366_136447523_136448927_136449048_136453519_136453595_136454512_136454646_136454983_136456691_136456740
ENSMUSG00000041506.16_1	chr9	+	1546	15	FSM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	30	10	-19	-2	multi-exon	FALSE	canonical	3	1203	junction_11	74.9465115388084	1374	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACCTTGTTCTCCCTTGTT	NA	False	NA	13	True	ATTAAA	-13	NA	106354497	106362613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
ENSMUSG00000041515.11_1	chr8	+	2839	9	FSM	ENSMUSG00000041515.11	ENSMUST00000047737.10	2847	9	2	6	1	-6	multi-exon	TRUE	canonical	3	23	junction_1	7.56637297521078	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGTAATGTTTGTTTC	NA	False	NA	12	True	ATTAAA	-16	NA	121463098	121483427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_121463149_121466555_121466731_121470444_121470629_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
ENSMUSG00000041515.11_6	chr8	+	2466	7	NNC	ENSMUSG00000041515.11	novel	764	4	NA	NA	-673	-6	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	15.0489940601431	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGTAATGTTTGTTTC	NA	False	NA	12	True	ATTAAA	-16	NA	121471545	121483427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_121471582_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
ENSMUSG00000041515.11_7	chr8	+	2081	3	ISM	ENSMUSG00000041515.11	ENSMUST00000162001.8	2270	9	14818	-1105	1248	-8	3prime_fragment	FALSE	canonical	3	42	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAAAGTAATGTTTGTT	NA	False	NA	10	True	ATTAAA	-14	NA	121480195	121483425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_121480473_121481126_121481243_121481737
ENSMUSG00000041515.11_8	chr8	+	1262	1	ISM	ENSMUSG00000041515.11	ENSMUST00000047737.10	2847	9	19071	4	3220	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTAATGTTTGTTTCTT	NA	False	NA	14	True	ATTAAA	-18	NA	121482167	121483429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_121482200_121483400
ENSMUSG00000041515.11_9	chr8	+	2491	6	ISM	ENSMUSG00000041515.11	ENSMUST00000162001.8	2270	9	6920	-1107	79	-6	3prime_fragment	FALSE	canonical	3	35	junction_1	4.84148737476408	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGTAATGTTTGTTTC	NA	False	NA	12	True	ATTAAA	-16	NA	121472297	121483427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
ENSMUSG00000041523.4_1	chr9	-	857	5	FSM	ENSMUSG00000041523.4	ENSMUST00000047740.4	1083	5	213	13	213	-13	multi-exon	FALSE	canonical	3	6	junction_2	1.4790199457749	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTATGTCTCATCTCCGA	9166	False	NA	NA	False	AATAAA	-12	NA	44366060	44364024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44364407_44364779_44364851_44365091_44365231_44365358_44365491_44365927
ENSMUSG00000041528.16_0	chr9	-	4267	39	NIC	ENSMUSG00000041528.16	novel	4309	39	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_17	14.9572798866187	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCCCTGGGCCCGCTC	NA	False	NA	-7	True	ATTAAA	-11	NA	107956514	107928875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107929160_107929233_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941101_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107956467
ENSMUSG00000041528.16_12	chr9	-	4203	38	ISM	ENSMUSG00000041528.16	ENSMUST00000178267.8	4309	39	1477	0	371	0	3prime_fragment	FALSE	canonical	3	35	junction_17	13.2204989468331	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCCCTGGGCCCGCTC	NA	False	NA	-7	True	ATTAAA	-11	NA	107955097	107928875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_107929160_107929233_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941119_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920
ENSMUSG00000041528.16_17	chr9	-	4674	39	NIC	ENSMUSG00000041528.16	novel	4309	39	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_38	16.5285784572411	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCCCTGGGCCCGCTC	NA	False	NA	-7	True	ATTAAA	-11	NA	107956470	107928875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107929160_107929233_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941119_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107955998
ENSMUSG00000041528.16_20	chr9	-	4696	39	FSM	ENSMUSG00000041528.16	ENSMUST00000162355.8	4727	39	26	5	-9	0	multi-exon	FALSE	canonical	3	15	junction_38	17.254651305945	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCCCTGGGCCCGCTC	NA	False	NA	-7	True	ATTAAA	-11	NA	107956474	107928875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107929160_107929233_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941101_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107955998
ENSMUSG00000041528.16_3	chr9	-	4221	38	ISM	ENSMUSG00000041528.16	ENSMUST00000162355.8	4727	39	1403	5	371	0	3prime_fragment	FALSE	canonical	3	25	junction_17	14.1729894654284	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCCCTGGGCCCGCTC	NA	False	NA	-7	True	ATTAAA	-11	NA	107955097	107928875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_107929160_107929233_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941101_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920
ENSMUSG00000041528.16_5	chr9	-	4241	39	FSM	ENSMUSG00000041528.16	ENSMUST00000178267.8	4309	39	68	0	-2	0	multi-exon	FALSE	canonical	3	35	junction_17	14.098780914274	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCCCTGGGCCCGCTC	NA	False	NA	-7	True	ATTAAA	-11	NA	107956506	107928875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107929160_107929233_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941119_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107956467
ENSMUSG00000041528.16_80	chr9	-	3779	35	NIC	ENSMUSG00000041528.16	novel	3789	35	NA	NA	-1	-9	combination_of_known_junctions	FALSE	canonical	3	25	junction_13	15.5326701127156	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCAAAGAGTAACTGGTGA	NA	False	NA	NA	False	AATGAA	-26	NA	107956505	107933106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941101_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107956467
ENSMUSG00000041530.18_0	chr4	-	2825	1	ISM	ENSMUSG00000041530.18	ENSMUST00000239428.2	7065	19	30580	5	5520	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAGTGCAGTCTGTTTTT	6980	False	NA	-25	True	TATAAA	-21	NA	126331634	126328809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126328800_126331600
ENSMUSG00000041530.18_1	chr4	-	7259	19	FSM	ENSMUSG00000041530.18	ENSMUST00000097888.10	7227	19	-54	22	-54	-22	multi-exon	FALSE	canonical	2	5	junction_8	3.48364786813131	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGGCTTTTATTTCTA	NA	False	NA	-42	True	TATAAA	-4	NA	126362430	126328826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126333405_126333634_126333835_126334156_126334259_126334969_126335105_126335681_126335877_126336608_126336700_126336873_126337034_126342559_126342745_126347350_126347485_126347618_126347742_126348097_126348218_126352901_126353050_126353572_126353661_126353793_126353929_126354159_126354297_126354698_126354881_126355477_126355599_126357464_126357649_126362189
ENSMUSG00000041548.5_1	chr5	-	1812	3	FSM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	0	4	0	-4	multi-exon	FALSE	canonical	3	315	junction_2	24.5	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTTGTGCTTCATTTA	NA	False	NA	-4	True	AATAAA	-16	NA	116560923	116546553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_116547550_116553465_116553530_116560171
ENSMUSG00000041548.5_3	chr5	-	418	1	ISM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	13952	4	6980	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTTGTGCTTCATTTA	NA	False	NA	-4	True	AATAAA	-16	NA	116546971	116546553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_116546600_116547000
ENSMUSG00000041556.9_0	chr4	+	1268	6	FSM	ENSMUSG00000041556.9	ENSMUST00000047951.9	1288	6	2	18	2	-18	multi-exon	FALSE	canonical	3	50	junction_2	6.34350061086148	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAACGCAACAATGGACG	NA	False	NA	5	True	NA	NA	NA	148245079	148250863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148245169_148248531_148248913_148249282_148249413_148249484_148249581_148250100_148250231_148250421
ENSMUSG00000041560.13_0	chr7	-	1509	13	FSM	ENSMUSG00000041560.13	ENSMUST00000044158.13	3176	13	10	1657	-9	-2	multi-exon	FALSE	canonical	3	1334	junction_1	195.89089579548	1628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAACGCTGGGGTCTTGTT	NA	False	NA	-11	True	AATAAA	-10	NA	15679989	15671764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_15671815_15672098_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679754
ENSMUSG00000041560.13_2	chr7	-	1792	12	NIC	ENSMUSG00000041560.13	novel	3176	13	NA	NA	-9	-3	intron_retention	FALSE	canonical	3	1683	junction_10	114.507858187885	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAACGCTGGGGTCTTGT	NA	False	NA	-12	True	AATAAA	-9	NA	15679989	15671765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679754
ENSMUSG00000041570.15_0	chr1	-	2146	1	ISM	ENSMUSG00000041570.15	ENSMUST00000048309.12	7823	19	75683	153	11329	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATAAAGTGCGTGTTGTCT	NA	False	NA	12	True	AATAAA	-29	NA	136198159	136196013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_136196000_136198200
ENSMUSG00000041570.15_1	chr1	-	4591	7	ISM	ENSMUSG00000041570.15	ENSMUST00000048309.12	7823	19	64726	173	372	-44	3prime_fragment	FALSE	canonical	3	44	junction_3	5.93717104351896	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACTGACGCTGATTCTT	3705	False	NA	-8	True	AATAAA	-9	NA	136209116	136196033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_136198886_136199268_136199388_136201487_136201604_136202538_136202612_136204275_136204497_136204931_136205069_136208043
ENSMUSG00000041570.15_17	chr1	-	4904	8	ISM	ENSMUSG00000041570.15	ENSMUST00000192001.6	6329	17	62830	1	-1118	-1	3prime_fragment	FALSE	canonical	3	34	junction_7	9.31752791949733	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTCAGACACCAATTTT	9782	False	NA	-1	True	ATTAAA	-21	NA	136210606	136196898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_136198886_136199268_136199388_136201487_136201604_136202538_136202612_136204275_136204497_136204931_136205069_136208043_136210238_136210549
ENSMUSG00000041570.15_3	chr1	-	7611	17	NIC	ENSMUSG00000041570.15	novel	6329	17	NA	NA	9	-36	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	13.4762522609218	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGCTGATTCTTCAATAAAG	6773	False	NA	0	True	AATAAA	-17	NA	136273819	136196025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_136198886_136199268_136199388_136201487_136201604_136202538_136202639_136204275_136204497_136204931_136205069_136208043_136210238_136210549_136210620_136211604_136211640_136213646_136213741_136215637_136215732_136220617_136220758_136221017_136221160_136225479_136225564_136232032_136232195_136252474_136252735_136273036
ENSMUSG00000041570.15_4	chr1	-	7582	17	FSM	ENSMUSG00000041570.15	ENSMUST00000192001.6	6329	17	-385	-868	7	-40	multi-exon	FALSE	canonical	3	33	junction_16	9.18197112552637	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACGCTGATTCTTCAAT	6771	False	NA	-4	True	AATAAA	-13	NA	136273821	136196029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_136198886_136199268_136199388_136201487_136201604_136202538_136202612_136204275_136204497_136204931_136205069_136208043_136210238_136210549_136210620_136211604_136211640_136213646_136213741_136215637_136215732_136220617_136220758_136221017_136221160_136225479_136225564_136232032_136232195_136252474_136252735_136273036
ENSMUSG00000041570.15_8	chr1	-	3311	5	ISM	ENSMUSG00000041570.15	ENSMUST00000048309.12	7823	19	69437	152	5083	-23	3prime_fragment	FALSE	canonical	3	44	junction_3	7.22409163839994	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAAGTGCGTGTTGTCTT	8416	False	NA	13	True	AATAAA	-30	NA	136204405	136196012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_136198886_136199268_136199388_136201487_136201604_136202538_136202612_136204275
ENSMUSG00000041571.11_0	chr7	-	671	6	FSM	ENSMUSG00000041571.11	ENSMUST00000044355.11	736	6	58	7	58	-7	multi-exon	FALSE	canonical	3	1985	junction_1	35.4028247460566	494	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCAAGGGAGATGTTTAT	NA	False	NA	-18	True	AATAAA	-14	NA	15656269	15651139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_15651465_15653772_15653872_15653967_15654043_15654229_15654284_15654373_15654399_15656176
ENSMUSG00000041583.9_0	chr7	-	1339	3	FSM	ENSMUSG00000041583.9	ENSMUST00000108513.5	1344	3	-10	15	-10	-15	multi-exon	FALSE	canonical	3	46	junction_1	9.5	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATTAAAAAATGTTTTTG	NA	False	NA	5	True	AATAAA	-21	NA	15573613	15567180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_15567876_15568304_15568891_15573555
ENSMUSG00000041592.17_0	chr11	-	3524	19	NIC	ENSMUSG00000041592.17	novel	11287	45	NA	NA	-7062	-3805	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	2.33861835331658	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATCAATCCACTTAGCA	NA	False	NA	NA	False	AAAAAG	-15	NA	113724107	113671004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_113671970_113682200_113682328_113684125_113684265_113684548_113684690_113685748_113685914_113690968_113691095_113693950_113694113_113697092_113697231_113701154_113701342_113712173_113712290_113712401_113712504_113715840_113715977_113717267_113717339_113717852_113717957_113719183_113719386_113720723_113720919_113721605_113721705_113723079_113723270_113723948
ENSMUSG00000041592.17_2	chr11	-	4259	20	ISM	ENSMUSG00000041592.17	ENSMUST00000041627.14	11287	45	232889	3175	-7110	-3175	3prime_fragment	TRUE	canonical	1	1	junction_8	2.27597350636207	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATAAGGTTGTGGGTCCCG	NA	False	NA	NA	False	TATAAA	-11	NA	113724155	113670374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_113671970_113682200_113682328_113684125_113684265_113684548_113684690_113685748_113685914_113690968_113691095_113693950_113694113_113697092_113697231_113701154_113701342_113712173_113712290_113712401_113712504_113714196_113714254_113715840_113715977_113717267_113717339_113717852_113717957_113719183_113719386_113720723_113720919_113721605_113721705_113723079_113723270_113723948
ENSMUSG00000041594.19_0	chr14	-	3366	18	FSM	ENSMUSG00000041594.19	ENSMUST00000037726.14	3416	18	43	7	0	0	multi-exon	TRUE	canonical	3	136	junction_13	13.8696352514015	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACTGTCTTGGTTTC	NA	False	NA	-3	True	AGTAAA	-19	NA	123220652	123156389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
ENSMUSG00000041594.19_12	chr14	-	3280	18	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_16	38.2839509410142	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACTGTCTTGGTTTC	NA	False	NA	-3	True	AGTAAA	-19	NA	123220660	123156389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215579_123215699_123220583
ENSMUSG00000041594.19_23	chr14	-	3597	18	FSM	ENSMUSG00000041594.19	ENSMUST00000148661.2	2719	18	-97	-781	1	-1	multi-exon	FALSE	canonical	3	7	junction_17	41.7946868363775	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAAACTGTCTTGGTTT	NA	False	NA	-4	True	AGTAAA	-18	NA	123220651	123156390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220350
ENSMUSG00000041594.19_4	chr14	-	3363	18	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_13	34.630726201335	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACTGTCTTGGTTTC	NA	False	NA	-3	True	AGTAAA	-19	NA	123220652	123156389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188002_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
ENSMUSG00000041598.8_0	chr11	-	2936	2	FSM	ENSMUSG00000041598.8	ENSMUST00000053536.5	3008	2	68	4	68	-4	multi-exon	FALSE	canonical	3	115	junction_1	0	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTTCTAGTGTCTGACT	7431	False	NA	-6	True	ATTAAA	-11	NA	113642639	113617681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_113620492_113642513
ENSMUSG00000041598.8_3	chr11	-	2096	1	ISM	ENSMUSG00000041598.8	ENSMUST00000106616.2	3405	2	22367	6	10371	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTTCTAGTGTCTGACT	NA	False	NA	-6	True	ATTAAA	-11	NA	113619777	113617681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_113617700_113619800
ENSMUSG00000041598.8_4	chr11	-	2900	2	NNC	ENSMUSG00000041598.8	novel	3405	2	NA	NA	-393	-4	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTTCTAGTGTCTGACT	6970	False	NA	-6	True	ATTAAA	-11	NA	113643100	113617681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_113620492_113643010
ENSMUSG00000041598.8_5	chr11	-	3123	2	FSM	ENSMUSG00000041598.8	ENSMUST00000106616.2	3405	2	276	6	112	-4	multi-exon	FALSE	canonical	3	5	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTTCTAGTGTCTGACT	8202	False	NA	-6	True	ATTAAA	-11	NA	113641868	113617681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_113620492_113641555
ENSMUSG00000041605.17_0	chr1	-	2574	10	NIC	ENSMUSG00000041605.17	novel	2988	10	NA	NA	181	-3	combination_of_known_junctions	FALSE	canonical	2	6	junction_9	17.8954439335895	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGATGAAGGATTCTGTG	NA	False	NA	-16	True	AATAAA	-17	NA	136161676	136141271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_136142157_136143493_136144179_136147460_136147635_136147868_136148080_136148809_136148864_136153073_136153297_136153889_136154007_136154517_136154643_136155251_136155316_136161640
ENSMUSG00000041605.17_1	chr1	-	2718	10	FSM	ENSMUSG00000041605.17	ENSMUST00000120339.8	2988	10	272	-2	127	2	multi-exon	FALSE	canonical	3	39	junction_9	8.93736780097342	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGGATTCTGTGTGTGT	NA	False	NA	-11	True	AATAAA	-22	NA	136161730	136141266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_136142157_136143493_136144179_136147460_136147635_136147868_136148080_136148809_136148864_136153073_136153297_136153889_136154007_136154517_136154643_136155251_136155401_136161640
ENSMUSG00000041605.17_2	chr1	-	3245	10	NNC	ENSMUSG00000041605.17	novel	2988	10	NA	NA	785	5	at_least_one_novel_splicesite	TRUE	canonical	3	11	junction_9	16.431676725155	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATTCTGTGTGTGTGCT	NA	False	NA	-8	True	AATAAA	-25	NA	136161072	136141263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_136142157_136143493_136144179_136147460_136147635_136147868_136148080_136148809_136148864_136153073_136153297_136153889_136154007_136154517_136154643_136155251_136155401_136160458
ENSMUSG00000041605.17_3	chr1	-	2630	9	ISM	ENSMUSG00000041605.17	ENSMUST00000120339.8	2988	10	6600	-2	-2	2	3prime_fragment	FALSE	canonical	3	47	junction_7	6.61319703320565	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGGATTCTGTGTGTGT	NA	False	NA	-11	True	AATAAA	-22	NA	136155402	136141266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_136142157_136143493_136144179_136147460_136147635_136147868_136148080_136148809_136148864_136153073_136153297_136153889_136154007_136154517_136154643_136155251
ENSMUSG00000041605.17_5	chr1	-	2729	10	NNC	ENSMUSG00000041605.17	novel	2988	10	NA	NA	113	2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	17.239776000378	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGGATTCTGTGTGTGT	NA	False	NA	-11	True	AATAAA	-22	NA	136161744	136141266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_136142157_136143493_136144179_136147460_136147632_136147868_136148080_136148809_136148864_136153073_136153297_136153889_136154007_136154517_136154643_136155251_136155401_136161640
ENSMUSG00000041607.18_0	chr18	+	4699	4	FSM	ENSMUSG00000041607.18	ENSMUST00000091789.11	4797	4	77	21	61	-21	multi-exon	FALSE	canonical	3	13	junction_1	4.02768199119819	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGATGGTGTACTAATTG	NA	False	NA	14	True	ATTAAA	-14	NA	82493347	82576807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_82493520_82518851_82518928_82540174_82540263_82572444
ENSMUSG00000041607.18_1	chr18	+	2118	6	FSM	ENSMUSG00000041607.18	ENSMUST00000153478.9	2070	6	-58	10	18	0	multi-exon	FALSE	canonical	0	0	junction_2	2.71293199325011	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATCTTTGCCCAGGTGT	7794	False	NA	13	True	AATAAA	-14	NA	82572612	82603752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_82572876_82579902_82579981_82590949_82591052_82593296_82593333_82597060_82597184_82602236
ENSMUSG00000041607.18_4	chr18	+	3618	1	ISM	ENSMUSG00000041607.18	ENSMUST00000091789.11	4797	4	79915	25	481	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACCAAAGATGGTGTACTA	335	False	NA	10	True	ATTAAA	-10	NA	82573185	82576803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_82573200_82576800
ENSMUSG00000041607.18_8	chr18	+	2024	5	FSM	ENSMUSG00000041607.18	ENSMUST00000132369.3	1947	5	-89	12	-18	-12	multi-exon	FALSE	canonical	1	4	junction_1	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATAAACTTGCAATGATC	7797	False	NA	0	True	AATAAA	-1	NA	82572615	82603739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_82572876_82590949_82591052_82593296_82593333_82597060_82597184_82602236
ENSMUSG00000041608.9_0	chr9	+	2922	11	FSM	ENSMUSG00000041608.9	ENSMUST00000047687.9	3453	11	16	515	16	-515	multi-exon	FALSE	canonical	3	4	junction_7	3.21869538788622	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGCAGCGTGTATTTGT	NA	False	NA	10	True	AATAAA	-12	NA	120368899	120396878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_120368950_120369717_120369770_120373024_120373153_120383134_120383253_120384710_120384862_120386457_120386618_120387401_120387636_120389546_120389820_120389986_120390098_120390964_120391103_120395371
ENSMUSG00000041608.9_2	chr9	+	3140	10	ISM	ENSMUSG00000041608.9	ENSMUST00000047687.9	3453	11	566	515	566	-515	3prime_fragment	FALSE	canonical	3	4	junction_6	3.33333333333333	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGCAGCGTGTATTTGT	NA	False	NA	10	True	AATAAA	-12	NA	120369449	120396878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_120369770_120373024_120373153_120383134_120383253_120384710_120384862_120386457_120386618_120387401_120387636_120389546_120389820_120389986_120390098_120390964_120391103_120395371
ENSMUSG00000041608.9_5	chr9	+	1804	3	ISM	ENSMUSG00000041608.9	ENSMUST00000047687.9	3453	11	21055	515	2839	-515	3prime_fragment	FALSE	canonical	3	12	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGCAGCGTGTATTTGT	5085	False	NA	10	True	AATAAA	-12	NA	120389938	120396878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_120390098_120390964_120391103_120395371
ENSMUSG00000041609.17_0	chr5	-	3812	10	NIC	ENSMUSG00000041609.17	novel	3026	9	NA	NA	-647	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	7.26907877057606	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACCTTGTGCCTCAGTT	NA	False	NA	-6	True	AATAAA	-11	NA	115870327	115786238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_115787629_115789877_115789999_115793959_115794091_115799433_115799578_115800758_115800978_115801765_115801946_115808212_115808360_115811138_115811256_115862599_115862816_115869180
ENSMUSG00000041609.17_1	chr5	-	1571	3	ISM	ENSMUSG00000041609.17	ENSMUST00000055408.13	3026	9	75665	1	-2970	-1	3prime_fragment	FALSE	canonical	3	30	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGTGCCTCAGTTCCTG	8190	False	NA	-2	True	AATAAA	-15	NA	115794015	115786234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_115787629_115789877_115789999_115793959
ENSMUSG00000041609.17_2	chr5	-	3677	9	FSM	ENSMUSG00000041609.17	ENSMUST00000055408.13	3026	9	-656	5	-656	0	multi-exon	FALSE	canonical	3	12	junction_3	5.84032319311183	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACCTTGTGCCTCAGTT	NA	False	NA	-6	True	AATAAA	-11	NA	115870336	115786238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115787629_115789877_115789999_115793959_115794091_115800758_115800978_115801765_115801946_115808212_115808360_115811138_115811256_115862599_115862816_115869180
ENSMUSG00000041609.17_3	chr5	-	1860	3	FSM	ENSMUSG00000041609.17	ENSMUST00000118576.8	1874	3	11	3	6	0	multi-exon	FALSE	canonical	3	4	junction_2	14.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACCTTGTGCCTCAGTT	NA	False	NA	-6	True	AATAAA	-11	NA	115791034	115786238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115787629_115789877_115789999_115790685
ENSMUSG00000041609.17_6	chr5	-	1593	3	FSM	ENSMUSG00000041609.17	ENSMUST00000121746.8	1568	3	-21	-4	-16	-1	multi-exon	FALSE	canonical	0	0	junction_2	16.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGTGCCTCAGTTCCTG	NA	False	NA	-2	True	AATAAA	-15	NA	115791061	115786234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115787629_115789877_115789999_115790983
ENSMUSG00000041617.11_0	chr16	+	3044	3	FSM	ENSMUSG00000041617.11	ENSMUST00000183101.2	685	3	-95	-2264	-14	0	multi-exon	FALSE	canonical	3	5	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAAGCTTCCTTCTTC	NA	False	NA	NA	False	AATAAA	-13	NA	17464319	17468601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17464648_17465471_17465517_17465930
ENSMUSG00000041617.11_1	chr16	+	2332	4	FSM	ENSMUSG00000041617.11	ENSMUST00000182822.8	1040	4	30	-1322	25	0	multi-exon	FALSE	canonical	2	5	junction_2	1.88561808316413	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAAGCTTCCTTCTTC	NA	False	NA	NA	False	AATAAA	-13	NA	17464363	17468601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17466658
ENSMUSG00000041617.11_2	chr16	+	3325	2	FSM	ENSMUSG00000041617.11	ENSMUST00000182526.2	365	2	-85	-2875	23	-1	multi-exon	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCCTAAGCTTCCTTCTT	NA	False	NA	NA	False	AATAAA	-12	NA	17464451	17468600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17464648_17465471
ENSMUSG00000041623.18_0	chr11	+	2059	5	FSM	ENSMUSG00000041623.18	ENSMUST00000106621.4	2062	5	0	3	0	-3	multi-exon	TRUE	canonical	3	249	junction_1	30.335622624235	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTTTTCTTCTTCTTTTT	NA	False	NA	12	True	AATAAA	-13	NA	113575272	113585470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_113575538_113578599_113580048_113582554_113582660_113583220_113583329_113585337
ENSMUSG00000041623.18_2	chr11	+	2619	5	NIC	ENSMUSG00000041623.18	novel	2062	5	NA	NA	0	-3	intron_retention	TRUE	canonical	3	43	junction_1	113.778293184597	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTTTTCTTCTTCTTTTT	NA	False	NA	12	True	AATAAA	-13	NA	113575272	113585470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_113576098_113578599_113580048_113582554_113582660_113583220_113583329_113585337
ENSMUSG00000041623.18_4	chr11	+	1953	4	NIC	ENSMUSG00000041623.18	novel	2062	5	NA	NA	1	-3	combination_of_known_splicesites	FALSE	canonical	3	28	junction_2	111.645271582216	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTTTTCTTCTTCTTTTT	NA	False	NA	12	True	AATAAA	-13	NA	113575273	113585470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_113575538_113578599_113580048_113583220_113583329_113585337
ENSMUSG00000041623.18_5	chr11	+	2157	5	FSM	ENSMUSG00000041623.18	ENSMUST00000042227.15	2196	5	36	3	1	-3	multi-exon	FALSE	canonical	3	41	junction_1	114.630929508575	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTTTTCTTCTTCTTTTT	NA	False	NA	12	True	AATAAA	-13	NA	113575273	113585470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_113575637_113578599_113580048_113582554_113582660_113583220_113583329_113585337
ENSMUSG00000041624.11_0	chr9	+	3638	3	ISM	ENSMUSG00000041624.11	ENSMUST00000213060.2	2897	5	-583	175818	-473	2468	5prime_fragment	FALSE	canonical	3	16	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGCTGAGTAGTAAGCAC	-20	True	NA	NA	False	NA	NA	NA	3532304	3585359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_3533100_3579517_3579580_3582578
ENSMUSG00000041624.11_1	chr9	+	3935	5	FSM	ENSMUSG00000041624.11	ENSMUST00000213060.2	2897	5	-555	-483	-445	483	multi-exon	FALSE	canonical	1	5	junction_4	5.59016994374947	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATGATGTGATCTTCA	8	True	NA	NA	False	AATAAA	-7	NA	3532332	3761660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_3533100_3579517_3579580_3582578_3582701_3634438_3635158_3759395
ENSMUSG00000041624.11_2	chr9	+	2881	8	FSM	ENSMUSG00000041624.11	ENSMUST00000115733.3	2243	8	-442	-196	-442	196	multi-exon	FALSE	canonical	0	0	junction_6	6.25642526870234	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATTTCTGGTAATGGATA	11	True	NA	NA	False	AAAAAG	-43	NA	3532335	3894932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_3533100_3579517_3579580_3582578_3582701_3634438_3635158_3759395_3759882_3797237_3797382_3865357_3865513_3894503
ENSMUSG00000041624.11_3	chr9	+	3860	6	NNC	ENSMUSG00000041624.11	novel	2897	5	NA	NA	-399	494	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	6.79411510058521	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTTCATATTTATTTGT	-26	True	NA	NA	False	AATAAA	-18	NA	3532378	3761671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_3533100_3579517_3579580_3582578_3582701_3634438_3635158_3759395_3761205_3761244
ENSMUSG00000041625.16_0	chr14	-	1005	2	ISM	ENSMUSG00000041625.16	ENSMUST00000038075.12	1076	3	12627	12	12550	-1	3prime_fragment	FALSE	canonical	3	40	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTTGCTGTTGCTGTTTG	NA	False	NA	-14	True	ATTAAA	-17	NA	123137947	123128283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_123129229_123137887
ENSMUSG00000041625.16_1	chr14	-	1038	3	FSM	ENSMUSG00000041625.16	ENSMUST00000038075.12	1076	3	27	11	13	0	multi-exon	FALSE	canonical	3	34	junction_2	3	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGCTGTTGCTGTTTGG	NA	False	NA	-13	True	ATTAAA	-18	NA	123150547	123128282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_123129229_123137887_123137945_123150512
ENSMUSG00000041625.16_3	chr14	-	2642	1	NIC	ENSMUSG00000041625.16	novel	686	4	NA	NA	19565	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATACGAGTTTGCTGTTG	NA	False	NA	-21	True	ATTAAA	-10	NA	123130932	123128290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_123128300_123130900
ENSMUSG00000041625.16_4	chr14	-	1234	3	FSM	ENSMUSG00000041625.16	ENSMUST00000162164.2	609	3	-10	-615	-10	0	multi-exon	TRUE	canonical	3	7	junction_2	16.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGCTGTTGCTGTTTGG	NA	False	NA	-13	True	ATTAAA	-18	NA	123150507	123128282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_123129229_123137887_123137945_123150276
ENSMUSG00000041629.8_0	chr11	-	932	3	FSM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	91	1596	91	-1596	multi-exon	FALSE	canonical	3	1327	junction_2	35.5	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATATCTAGTTTCCAT	NA	False	NA	-24	True	AATAAA	-6	NA	113574890	113553740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_113554370_113568129_113568230_113574687
ENSMUSG00000041632.8_0	chr13	+	1840	11	FSM	ENSMUSG00000041632.8	ENSMUST00000052249.7	1849	11	8	1	6	-1	multi-exon	FALSE	canonical	3	414	junction_10	37.2860563750043	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTTGTGTGGTGTGATT	NA	False	NA	19	True	AATAAA	-14	NA	99481301	99552069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ENSMUSG00000041632.8_1	chr13	+	1962	12	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	7	-1	combination_of_known_junctions	FALSE	canonical	2	16	junction_6	174.354630538115	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTTGTGTGGTGTGATT	NA	False	NA	19	True	AATAAA	-14	NA	99481302	99552069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99537777_99537901_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ENSMUSG00000041632.8_2	chr13	+	1710	9	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	6	-1	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	145.098027209194	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTTGTGTGGTGTGATT	NA	False	NA	19	True	AATAAA	-14	NA	99481301	99552069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_99481384_99484839_99484918_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ENSMUSG00000041638.19_0	chr5	+	8532	58	FSM	ENSMUSG00000041638.19	ENSMUST00000064454.12	8555	58	19	4	1	2	multi-exon	TRUE	canonical	2	352	junction_15	70.6565046091486	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAGCAGGAGTTTGTCA	NA	False	NA	NA	False	AATAAA	-19	NA	115703331	115760709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115703366_115709467_115709571_115712637_115712702_115713223_115713356_115714178_115714288_115716950_115717050_115717134_115717270_115717693_115717763_115717845_115717955_115718563_115718639_115719061_115719191_115719548_115719600_115719839_115719939_115720322_115720497_115721456_115721610_115723864_115723958_115725847_115725924_115726034_115726195_115726992_115727183_115727259_115727385_115728303_115728483_115729032_115729127_115730123_115730238_115730367_115730567_115731635_115731792_115732091_115732274_115733051_115733133_115733351_115733496_115734914_115735043_115735124_115735315_115735432_115735504_115736759_115736926_115737130_115737326_115740444_115740692_115741271_115741394_115742068_115742184_115742876_115743057_115744531_115744753_115747287_115747357_115747524_115747664_115747749_115747947_115748080_115748224_115748866_115748985_115749082_115749299_115750646_115750812_115751414_115751577_115751782_115751876_115752134_115752279_115752389_115752660_115752919_115753034_115753427_115753659_115754409_115754604_115754692_115754808_115757355_115757453_115757710_115757860_115758202_115758311_115759559_115759779_115760083
ENSMUSG00000041638.19_107	chr5	+	4328	25	ISM	ENSMUSG00000041638.19	ENSMUST00000064454.12	8555	58	37257	5	-3185	1	3prime_fragment	FALSE	canonical	2	426	junction_3	68.7082701637066	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGAAGCAGGAGTTTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	115740569	115760708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_115740692_115741271_115741394_115742068_115742184_115742876_115743057_115744531_115744753_115747287_115747357_115747524_115747664_115747749_115747947_115748080_115748224_115748866_115748985_115749082_115749299_115750646_115750812_115751414_115751577_115751782_115751876_115752134_115752279_115752389_115752660_115752919_115753034_115753427_115753659_115754409_115754604_115754692_115754808_115757355_115757453_115757710_115757860_115758202_115758311_115759559_115759779_115760083
ENSMUSG00000041638.19_124	chr5	+	3331	18	ISM	ENSMUSG00000041638.19	ENSMUST00000064454.12	8555	58	44467	4	-117	2	3prime_fragment	FALSE	canonical	2	428	junction_11	65.5580252240736	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAGCAGGAGTTTGTCA	NA	False	NA	NA	False	AATAAA	-19	NA	115747779	115760709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_115747947_115748080_115748224_115748866_115748985_115749082_115749299_115750646_115750812_115751414_115751577_115751782_115751876_115752134_115752279_115752389_115752660_115752919_115753034_115753427_115753659_115754409_115754604_115754692_115754808_115757355_115757453_115757710_115757860_115758202_115758311_115759559_115759779_115760083
ENSMUSG00000041642.19_0	chr1	+	9102	35	FSM	ENSMUSG00000041642.19	ENSMUST00000075164.11	9115	35	11	2	11	-2	multi-exon	FALSE	canonical	3	43	junction_3	11.0094328853373	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGTGTGGCTAGTGGG	6185	False	NA	1	True	AATAAA	-11	NA	136059137	136105734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_136059501_136072336_136072560_136072867_136073051_136075235_136075386_136075471_136075607_136075944_136076116_136076363_136076480_136076998_136077195_136078868_136079059_136079780_136079845_136079934_136080154_136080495_136080578_136080930_136081049_136081841_136082034_136083834_136084035_136085200_136085309_136086018_136086088_136086981_136087215_136087375_136087524_136087750_136087946_136088041_136088144_136089143_136089310_136089466_136089519_136089701_136089760_136090524_136090731_136090810_136090889_136092755_136092870_136094899_136094939_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101774
ENSMUSG00000041642.19_1	chr1	+	5810	34	NIC	ENSMUSG00000041642.19	novel	9115	35	NA	NA	11	2444	combination_of_known_splicesites	FALSE	canonical	3	14	junction_27	14.2043333317495	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGCCTCCTGGAAACTG	6185	False	NA	24	True	AATATA	-25	NA	136059137	136102481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_136059501_136072336_136072560_136072867_136073051_136075235_136075386_136075471_136075607_136075944_136076116_136076363_136076480_136076998_136077195_136078868_136079059_136079780_136079845_136079934_136080154_136080495_136080578_136080930_136081049_136081841_136082034_136083834_136084035_136085200_136085309_136086018_136086088_136086981_136087215_136087375_136087524_136087750_136087946_136088041_136088144_136089143_136089310_136089466_136089519_136089701_136089760_136090524_136090731_136090810_136090889_136092755_136092870_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101774
ENSMUSG00000041642.19_18	chr1	+	6143	18	ISM	ENSMUSG00000041642.19	ENSMUST00000075164.11	9115	35	28035	2	-934	-2	3prime_fragment	FALSE	canonical	3	55	junction_1	10.6446211053991	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGTGTGGCTAGTGGG	NA	False	NA	1	True	AATAAA	-11	NA	136087161	136105734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_136087215_136087375_136087524_136087750_136087946_136088041_136088144_136089143_136089310_136089466_136089519_136089701_136089760_136090524_136090731_136090810_136090889_136092755_136092870_136094899_136094939_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101774
ENSMUSG00000041642.19_26	chr1	+	4768	6	ISM	ENSMUSG00000041642.19	ENSMUST00000075164.11	9115	35	38627	2	702	-2	3prime_fragment	FALSE	canonical	3	64	junction_1	12.1885191881541	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGTGTGGCTAGTGGG	NA	False	NA	1	True	AATAAA	-11	NA	136097753	136105734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101774
ENSMUSG00000041642.19_29	chr1	+	4217	3	ISM	ENSMUSG00000041642.19	ENSMUST00000075164.11	9115	35	40886	0	2961	0	3prime_fragment	FALSE	canonical	3	67	junction_1	15.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGTGTGGCTAGTGGGTT	NA	False	NA	3	True	AATAAA	-13	NA	136100012	136105736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_136100068_136100540_136100741_136101774
ENSMUSG00000041642.19_30	chr1	+	2579	1	ISM	ENSMUSG00000041642.19	ENSMUST00000075164.11	9115	35	44031	0	6106	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGTGTGGCTAGTGGGTT	NA	False	NA	3	True	AATAAA	-13	NA	136103157	136105736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_136103200_136105700
ENSMUSG00000041642.19_5	chr1	+	5866	35	NNC	ENSMUSG00000041642.19	novel	9115	35	NA	NA	11	2458	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	14.7554752022057	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGACTTGAAGTTTCTT	6185	False	NA	38	True	AATATA	-39	NA	136059137	136102495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_136059501_136072336_136072560_136072867_136073051_136075235_136075386_136075471_136075607_136075944_136076116_136076363_136076480_136076998_136077195_136078868_136079059_136079780_136079845_136079934_136080154_136080492_136080578_136080930_136081049_136081841_136082034_136083834_136084035_136085200_136085309_136086018_136086088_136086981_136087215_136087375_136087524_136087750_136087946_136088041_136088144_136089143_136089310_136089466_136089519_136089701_136089760_136090524_136090731_136090810_136090889_136092755_136092870_136094899_136094939_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101774
ENSMUSG00000041642.19_8	chr1	+	2529	14	ISM	ENSMUSG00000041642.19	ENSMUST00000075164.11	9115	35	13	23574	13	4431	5prime_fragment	FALSE	canonical	3	43	junction_3	9.2946507489189	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGCTTCTCTGCTACTT	6187	False	NA	NA	False	AAAAAG	-13	NA	136059139	136082162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_136059501_136072336_136072560_136072867_136073051_136075235_136075386_136075471_136075607_136075944_136076116_136076363_136076480_136076998_136077195_136078868_136079059_136079780_136079845_136079934_136080154_136080495_136080578_136080930_136081049_136081841
ENSMUSG00000041645.15_0	chr12	-	2845	9	FSM	ENSMUSG00000041645.15	ENSMUST00000044923.15	2850	9	1	4	1	-3	multi-exon	FALSE	canonical	3	750	junction_8	40.7106788815908	1543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATCCTGAGGGTGTTGC	NA	False	NA	-16	True	ATTAAA	-16	NA	103392077	103374244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
ENSMUSG00000041645.15_2	chr12	-	2734	8	ISM	ENSMUSG00000041645.15	ENSMUST00000110001.4	3063	9	1252	5	1252	-5	3prime_fragment	FALSE	canonical	3	805	junction_5	28.1598933207627	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACATCCTGAGGGTGTT	768	False	NA	-18	True	ATTAAA	-14	NA	103390787	103374246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130
ENSMUSG00000041649.14_18	chrX	+	4216	6	NIC	ENSMUSG00000041649.14	novel	4752	7	NA	NA	126	-2	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	53.440059880206	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTTTTTTTGAGATTTT	4393	False	NA	17	True	NA	NA	NA	152020869	152178791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_152021089_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ENSMUSG00000041649.14_24	chrX	+	4437	8	FSM	ENSMUSG00000041649.14	ENSMUST00000039545.5	4407	8	-32	2	-32	-2	multi-exon	FALSE	canonical	2	12	junction_1	60.7816433083649	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTTTTTTTGAGATTTT	NA	False	NA	17	True	NA	NA	NA	152142576	152178791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_152142706_152142837_152142961_152143291_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ENSMUSG00000041649.14_25	chrX	+	4288	7	NIC	ENSMUSG00000041649.14	novel	4407	8	NA	NA	-1	3	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	50.56349144063	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTGAGATTTTCAGGA	NA	False	NA	22	True	NA	NA	NA	152142607	152178796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_152142706_152143291_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ENSMUSG00000041649.14_26	chrX	+	4499	7	NIC	ENSMUSG00000041649.14	novel	4407	8	NA	NA	44	4	intron_retention	FALSE	canonical	3	13	junction_1	51.9123192401273	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTGAGATTTTCAGGAA	NA	False	NA	23	True	NA	NA	NA	152142652	152178797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_152142961_152143291_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ENSMUSG00000041649.14_27	chrX	+	4382	6	ISM	ENSMUSG00000041649.14	ENSMUST00000039545.5	4407	8	486	2	486	-2	3prime_fragment	FALSE	canonical	3	100	junction_1	23.8964432499902	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTTTTTTTGAGATTTT	NA	False	NA	17	True	NA	NA	NA	152143094	152178791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ENSMUSG00000041649.14_3	chrX	+	4590	7	FSM	ENSMUSG00000041649.14	ENSMUST00000112574.9	4752	7	39	123	39	-123	multi-exon	FALSE	canonical	3	21	junction_2	59.2527542725981	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATAATAACAGCTCCTT	4306	False	NA	-4	True	NA	NA	NA	152020782	152179005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_152021089_152091847_152091921_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ENSMUSG00000041649.14_37	chrX	+	3965	4	ISM	ENSMUSG00000041649.14	ENSMUST00000039545.5	4407	8	23068	-212	23068	-123	3prime_fragment	FALSE	canonical	3	142	junction_2	10.2089285540757	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATAATAACAGCTCCTT	NA	False	NA	-4	True	NA	NA	NA	152165676	152179005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_152166067_152167590_152167703_152168369_152168510_152175682
ENSMUSG00000041649.14_7	chrX	+	4270	8	NIC	ENSMUSG00000041649.14	novel	4752	7	NA	NA	-12	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	64.3869044867647	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTTTTTTTGAGATTTT	3973	False	NA	17	True	NA	NA	NA	152020449	152178791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_152020508_152020946_152021089_152091847_152091921_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
ENSMUSG00000041650.16_1	chr14	+	2478	24	FSM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	-5	119	3	0	multi-exon	FALSE	canonical	3	76	junction_1	20.0942015919555	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTAGTTTGCCCTTTT	NA	False	NA	13	True	AATAAA	-16	NA	122771745	123127237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
ENSMUSG00000041650.16_15	chr14	+	921	7	ISM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	179680	119	-10	0	3prime_fragment	FALSE	canonical	3	109	junction_2	15.3884877605162	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTAGTTTGCCCTTTT	NA	False	NA	13	True	AATAAA	-16	NA	122951430	123127237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
ENSMUSG00000041650.16_4	chr14	+	1123	10	ISM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	6	230870	0	-5253	5prime_fragment	FALSE	canonical	3	76	junction_1	11.3409560421782	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAAAACAGCAGT	NA	False	NA	NA	False	NA	NA	NA	122771756	122896486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089
ENSMUSG00000041650.16_6	chr14	+	2368	23	NIC	ENSMUSG00000041650.16	novel	2592	24	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	13	junction_16	27.256245019481	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATATTAGTTTGCCCTTT	NA	False	NA	12	True	AATAAA	-15	NA	122771743	123127236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
ENSMUSG00000041653.6_3	chr15	+	2959	9	NNC	ENSMUSG00000041653.6	novel	1313	8	NA	NA	-19	2275	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	14.5425023637612	60	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAAAATGTATTCTCTGT	NA	False	NA	2	True	AATAAA	-37	NA	84052018	84073712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_84052262_84055282_84055516_84056916_84056983_84058468_84058679_84061016_84061078_84063380_84063537_84065120_84065254_84070177_84070283_84071960
ENSMUSG00000041654.16_1	chr11	-	2683	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	167.525785743237	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGCTGTGTTCCGTGCGA	7766	False	NA	-4	True	AATAAA	-17	NA	113456585	113135680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
ENSMUSG00000041654.16_2	chr11	-	2667	10	NNC	ENSMUSG00000041654.16	novel	2781	11	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	canonical	3	152	junction_9	132.005985648052	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGAGCTGTGTTCCGTGCG	7760	False	NA	-5	True	AATAAA	-16	NA	113456591	113135681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
ENSMUSG00000041654.16_3	chr11	-	2686	10	FSM	ENSMUSG00000041654.16	ENSMUST00000106633.10	2688	10	0	2	0	-2	multi-exon	FALSE	canonical	0	0	junction_5	154.822558728882	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGCTGTGTTCCGTGCGA	7766	False	NA	-4	True	AATAAA	-17	NA	113456585	113135680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ENSMUSG00000041654.16_6	chr11	-	2664	10	FSM	ENSMUSG00000041654.16	ENSMUST00000071539.10	2664	10	-2	2	1	-2	multi-exon	FALSE	canonical	3	154	junction_5	113.78341999899	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGCTGTGTTCCGTGCGA	7767	False	NA	-4	True	AATAAA	-17	NA	113456584	113135680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ENSMUSG00000041658.13_0	chrX	+	2159	10	NIC	ENSMUSG00000041658.13	novel	2258	11	NA	NA	7	-2	combination_of_known_junctions	FALSE	canonical	3	77	junction_3	67.8576942333489	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCAGTGTCTGTGTTTC	3189	False	NA	NA	False	AATAAA	-15	NA	151922989	151954937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_151923572_151924359_151924394_151926971_151927072_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151954211
ENSMUSG00000041658.13_1	chrX	+	2234	11	FSM	ENSMUSG00000041658.13	ENSMUST00000039720.11	2258	11	21	3	15	-3	multi-exon	FALSE	canonical	3	216	junction_4	30.0765689532566	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTCCAGTGTCTGTGTTT	3197	False	NA	NA	False	AATAAA	-14	NA	151922997	151954936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_151923572_151924359_151924394_151926971_151927072_151931447_151931532_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151954211
ENSMUSG00000041669.16_0	chr12	-	3408	5	FSM	ENSMUSG00000041669.16	ENSMUST00000074416.10	909	5	-49	-2450	-49	2450	multi-exon	FALSE	canonical	0	0	junction_2	1.29903810567666	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGATGGCTGTCACTGT	NA	False	NA	NA	False	AATAAA	-10	NA	103208458	103160716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_103163611_103168907_103169038_103201844_103201981_103207598_103207722_103208333
ENSMUSG00000041670.20_0	chr1	-	4866	20	NIC	ENSMUSG00000041670.20	novel	7411	32	NA	NA	-21305	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	2.69605231049804	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGGTAGCCATCTGCG	NA	False	NA	-3	True	AATAAA	-15	NA	22572915	22356476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_22358865_22360283_22360424_22361236_22361339_22363045_22363159_22367081_22367221_22467674_22467788_22474667_22474740_22496120_22496184_22497711_22497838_22498715_22498873_22504097_22504252_22504353_22504526_22507271_22507403_22511805_22511919_22514768_22514816_22518515_22518640_22522234_22522335_22523722_22523834_22525668_22525734_22572479
ENSMUSG00000041670.20_17	chr1	-	3816	9	NIC	ENSMUSG00000041670.20	novel	7411	32	NA	NA	73297	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	3.88707795136655	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTAGCCATCTGCGTT	NA	False	NA	-1	True	AATAAA	-17	NA	22475206	22356474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_22358865_22360283_22360424_22361236_22361339_22363045_22363159_22367081_22367221_22443567_22443735_22449651_22449765_22467674_22467788_22474667
ENSMUSG00000041670.20_18	chr1	-	3057	10	NIC	ENSMUSG00000041670.20	novel	6605	28	NA	NA	-21220	4863	intron_retention	FALSE	canonical	2	3	junction_6	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAAGTTTGGGTTTAC	NA	False	NA	NA	False	NA	NA	NA	22572830	22502408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_22504252_22504353_22504526_22507271_22507403_22511805_22511919_22514768_22514816_22518515_22518640_22522234_22522335_22523722_22523834_22525668_22525734_22572479
ENSMUSG00000041670.20_7	chr1	-	3224	7	ISM	ENSMUSG00000041670.20	ENSMUST00000081544.14	6605	28	401134	0	-57642	0	3prime_fragment	TRUE	canonical	1	2	junction_5	3.41565025531987	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTAGCCATCTGCGTT	NA	False	NA	-1	True	AATAAA	-17	NA	22443671	22356474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_22358865_22360283_22360424_22361236_22361339_22363045_22363159_22367081_22367221_22416516_22416753_22443567
ENSMUSG00000041671.14_0	chr6	+	1716	12	FSM	ENSMUSG00000041671.14	ENSMUST00000041852.8	2831	12	6	1109	6	97	multi-exon	FALSE	canonical	3	42	junction_5	7.76088944378656	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGAACTCGTTTAATGAC	NA	False	NA	7	True	AATAAA	-12	NA	142291385	142307874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_142291534_142293283_142293365_142294248_142294369_142296787_142296917_142299250_142299325_142300350_142300512_142302208_142302310_142303105_142303239_142304124_142304238_142304761_142304885_142306584_142306723_142307479
ENSMUSG00000041671.14_15	chr6	+	749	4	ISM	ENSMUSG00000041671.14	ENSMUST00000041852.8	2831	12	12765	1109	5479	97	3prime_fragment	FALSE	canonical	3	58	junction_2	6.23609564462324	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGAACTCGTTTAATGAC	563	False	NA	7	True	AATAAA	-12	NA	142304144	142307874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_142304238_142304761_142304885_142306584_142306723_142307479
ENSMUSG00000041671.14_18	chr6	+	193	1	ISM	ENSMUSG00000041671.14	ENSMUST00000041852.8	2831	12	16302	1109	9016	97	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGAACTCGTTTAATGAC	4100	False	NA	7	True	AATAAA	-12	NA	142307681	142307874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_142307700_142307900
ENSMUSG00000041673.13_0	chr14	+	2381	2	ISM	ENSMUSG00000041673.13	ENSMUST00000120866.8	1231	3	3880	-1361	13	1361	3prime_fragment	FALSE	canonical	3	9	junction_1	0	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTCATACCACGTCCACA	NA	False	NA	NA	False	AATAAA	-15	NA	32717234	32732714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_32717266_32730364
ENSMUSG00000041673.13_1	chr14	+	2361	3	ISM	ENSMUSG00000041673.13	ENSMUST00000038956.12	2587	4	3896	-1	13	1	3prime_fragment	FALSE	canonical	3	4	junction_2	2.5	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATAACATGGCTTC	NA	False	NA	NA	False	AATAGA	-9	NA	32717234	32737249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_32717266_32730364_32731227_32735781
ENSMUSG00000041679.10_0	chr8	-	3824	3	FSM	ENSMUSG00000041679.10	ENSMUST00000210801.2	3830	3	8	-2	-7	0	multi-exon	FALSE	canonical	2	2	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTTCTCTGATGTTCT	6339	False	NA	NA	False	ATTAAA	-14	NA	106052898	106038972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106042655_106049896_106049999_106052858
ENSMUSG00000041679.10_1	chr8	-	2325	7	FSM	ENSMUSG00000041679.10	ENSMUST00000210412.2	2304	7	-14	-7	1	0	multi-exon	FALSE	canonical	0	0	junction_1	2.73353657780945	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTTCTCTGATGTTCT	6332	False	NA	NA	False	ATTAAA	-14	NA	106052905	106038972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106039578_106039676_106039895_106040052_106040197_106040312_106040529_106041707_106042701_106049896_106049999_106052858
ENSMUSG00000041679.10_2	chr8	-	2528	5	NIC	ENSMUSG00000041679.10	novel	2416	6	NA	NA	-6	0	intron_retention	FALSE	canonical	1	2	junction_1	2.44948974278318	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTTCTCTGATGTTCT	6340	False	NA	NA	False	ATTAAA	-14	NA	106052897	106038972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_106040197_106040312_106040529_106041707_106042655_106049896_106049999_106052858
ENSMUSG00000041679.10_3	chr8	-	2573	5	NIC	ENSMUSG00000041679.10	novel	2304	7	NA	NA	-5	0	intron_retention	FALSE	canonical	1	1	junction_3	2.77263412660235	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTTCTCTGATGTTCT	6341	False	NA	NA	False	ATTAAA	-14	NA	106052896	106038972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_106040197_106040312_106040529_106041707_106042701_106049896_106049999_106052858
ENSMUSG00000041679.10_4	chr8	-	2263	7	NIC	ENSMUSG00000041679.10	novel	2304	7	NA	NA	2	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	2.74873708374511	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTTCTCTGATGTTCT	6348	False	NA	NA	False	ATTAAA	-14	NA	106052889	106038972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_106039578_106039676_106039895_106040052_106040197_106040312_106040529_106041707_106042655_106049896_106049999_106052858
ENSMUSG00000041684.12_0	chr1	+	3241	11	NIC	ENSMUSG00000041684.12	novel	3313	11	NA	NA	-14	4	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	19.4846093109408	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCCTATGAATTTTAATG	NA	False	NA	18	True	AATAAA	-18	NA	44158145	44183674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_44158356_44159333_44159435_44165502_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ENSMUSG00000041684.12_1	chr1	+	3300	11	NIC	ENSMUSG00000041684.12	novel	3313	11	NA	NA	-15	5	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	13.7317151150175	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCTATGAATTTTAATGT	NA	False	NA	19	True	AATAAA	-19	NA	44158144	44183675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_44158336_44159333_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ENSMUSG00000041684.12_10	chr1	+	3155	10	NIC	ENSMUSG00000041684.12	novel	3570	10	NA	NA	66	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	17.7311889541676	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTAATCCTATGAATTT	NA	False	NA	13	True	AATAAA	-13	NA	44159204	44183669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_44159435_44165502_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ENSMUSG00000041684.12_18	chr1	+	2960	6	NIC	ENSMUSG00000041684.12	novel	3570	10	NA	NA	8505	5	intron_retention	FALSE	canonical	3	49	junction_5	4.53431361950185	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCTATGAATTTTAATGT	NA	False	NA	19	True	AATAAA	-19	NA	44167643	44183675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ENSMUSG00000041684.12_2	chr1	+	3320	11	NIC	ENSMUSG00000041684.12	novel	3313	11	NA	NA	-15	5	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	12.9479728143057	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCTATGAATTTTAATGT	NA	False	NA	19	True	AATAAA	-19	NA	44158144	44183675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_44158356_44159333_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ENSMUSG00000041684.12_24	chr1	+	2879	9	ISM	ENSMUSG00000041684.12	ENSMUST00000114709.3	3570	10	6427	255	6416	5	3prime_fragment	FALSE	canonical	3	45	junction_3	5.71729831301464	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCTATGAATTTTAATGT	NA	False	NA	19	True	AATAAA	-19	NA	44165554	44183675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ENSMUSG00000041684.12_25	chr1	+	1483	1	ISM	ENSMUSG00000041684.12	ENSMUST00000114709.3	3570	10	23065	255	23054	5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCTATGAATTTTAATGT	7512	False	NA	19	True	AATAAA	-19	NA	44182192	44183675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_44182200_44183700
ENSMUSG00000041684.12_7	chr1	+	3409	11	NIC	ENSMUSG00000041684.12	novel	3570	10	NA	NA	-78	5	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	15.8820653568735	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCTATGAATTTTAATGT	NA	False	NA	19	True	AATAAA	-19	NA	44158589	44183675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_44158890_44159333_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ENSMUSG00000041684.12_8	chr1	+	3230	10	FSM	ENSMUSG00000041684.12	ENSMUST00000114709.3	3570	10	85	255	74	5	multi-exon	FALSE	canonical	3	41	junction_1	6.90857402520436	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCTATGAATTTTAATGT	NA	False	NA	19	True	AATAAA	-19	NA	44159212	44183675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
ENSMUSG00000041685.17_1	chr13	-	1725	1	ISM	ENSMUSG00000041685.17	ENSMUST00000099277.12	4979	27	90062	5	10648	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAATTGACTTTGTGCCT	NA	False	NA	-9	True	AATAAA	-17	NA	98861640	98859915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_98859900_98861600
ENSMUSG00000041685.17_3	chr13	-	4881	26	NIC	ENSMUSG00000041685.17	novel	5122	26	NA	NA	-9	-9	combination_of_known_junctions	TRUE	non_canonical	0	0	junction_14	64.1266746370027	389	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGCAATTGACTTTGT	NA	False	NA	-13	True	AATAAA	-13	NA	98951725	98859919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_98862285_98862568_98862734_98866696_98866762_98867284_98867485_98868584_98868718_98869025_98869182_98871526_98871639_98879918_98880049_98882308_98882413_98884723_98884813_98886359_98886403_98888414_98888440_98888841_98888854_98891587_98891762_98892073_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
ENSMUSG00000041697.9_0	chr5	-	533	3	FSM	ENSMUSG00000041697.10	ENSMUST00000040154.10	571	3	25	13	25	2	multi-exon	FALSE	canonical	3	7177	junction_2	62.5	1467	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTCCGTGAGCTGGAC	4879	False	NA	-39	True	AATAAA	-13	NA	115487015	115483713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115483986_115486623_115486767_115486897
ENSMUSG00000041702.8_1	chr12	-	3087	1	ISM	ENSMUSG00000041702.8	ENSMUST00000223554.2	8157	12	94520	3	56395	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCGCTGAGTTGGACATA	7644	False	NA	-15	True	AATAAA	-12	NA	102750145	102747058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_102747100_102750100
ENSMUSG00000041702.8_2	chr12	-	8183	12	FSM	ENSMUSG00000041702.8	ENSMUST00000223554.2	8157	12	-29	3	-27	-3	multi-exon	TRUE	canonical	3	7	junction_10	26.1040511722473	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCGCTGAGTTGGACATA	NA	False	NA	-15	True	AATAAA	-12	NA	102844694	102747058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_102752192_102754193_102754644_102756963_102757143_102760004_102760195_102761431_102761576_102774158_102774320_102777378_102777455_102778893_102779103_102803876_102804957_102806358_102806547_102807297_102807451_102844474
ENSMUSG00000041702.8_22	chr12	-	3470	3	FSM	ENSMUSG00000041702.8	ENSMUST00000221376.2	3509	3	35	4	-28	-4	multi-exon	FALSE	canonical	3	63	junction_2	9	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGATTGGTATATCTTT	NA	False	NA	NA	False	NA	NA	NA	102844695	102801895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_102804957_102806358_102806547_102844474
ENSMUSG00000041702.8_3	chr12	-	8031	11	FSM	ENSMUSG00000041702.8	ENSMUST00000045652.8	4035	11	-161	-3835	-31	-6	multi-exon	FALSE	canonical	3	58	junction_1	8.02745289615579	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAACCGCTGAGTTGGAC	NA	False	NA	-18	True	AATAAA	-9	NA	102844698	102747061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_102752192_102754193_102754644_102756963_102757143_102760004_102760195_102761431_102761576_102774158_102774320_102777378_102777455_102778893_102779103_102803876_102804957_102806358_102806547_102844474
ENSMUSG00000041702.8_9	chr12	-	7077	9	ISM	ENSMUSG00000041702.8	ENSMUST00000223554.2	8157	12	40255	2	2130	-2	3prime_fragment	FALSE	canonical	3	58	junction_1	7.75806032459145	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCGCTGAGTTGGACATAG	NA	False	NA	-14	True	AATAAA	-13	NA	102804410	102747057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_102752192_102754193_102754644_102756963_102757143_102760004_102760195_102761431_102761576_102774158_102774320_102777378_102777455_102778893_102779103_102803876
ENSMUSG00000041703.8_0	chr14	-	3936	2	FSM	ENSMUSG00000041703.8	ENSMUST00000039118.7	4767	2	841	-10	841	10	multi-exon	FALSE	canonical	3	83	junction_1	0	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTATCCAAGGCACAT	NA	False	NA	-16	True	AATAAA	-23	NA	122702248	122694196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_122697188_122701303
ENSMUSG00000041703.8_1	chr14	-	2405	1	Genic_Genomic	ENSMUSG00000041703.8	novel	NA	NA	NA	NA	832	10	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTATCCAAGGCACAT	NA	False	NA	-16	True	AATAAA	-23	NA	122696601	122694196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_-_122694200_122696600
ENSMUSG00000041712.8_0	chr12	+	3220	11	FSM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	35	6	35	-6	multi-exon	FALSE	canonical	3	541	junction_2	45.0115540722602	1224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAGTTGCTTTTCTGAT	NA	False	NA	27	True	ATTAAA	-8	NA	102724260	102743960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
ENSMUSG00000041712.8_40	chr12	+	1503	1	ISM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	18232	6	18232	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAGTTGCTTTTCTGAT	NA	False	NA	27	True	ATTAAA	-8	NA	102742457	102743960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_102742500_102744000
ENSMUSG00000041716.8_0	chr12	-	1896	2	FSM	ENSMUSG00000041716.8	ENSMUST00000174651.2	2795	2	892	7	892	-7	multi-exon	FALSE	canonical	3	96	junction_1	0	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATTTGATCTTTG	6382	False	NA	-30	True	AATAAA	-9	NA	102724039	102707997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_102709654_102723799
ENSMUSG00000041718.17_1	chrX	+	4057	27	NIC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	548	junction_3	189.502244292029	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGAGTGGAGTTTTCT	NA	False	NA	10	True	AATAAA	-20	NA	143101020	143157441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ENSMUSG00000041718.17_129	chrX	+	3904	24	ISM	ENSMUSG00000041718.17	ENSMUST00000154827.8	4168	27	17947	5	101	0	3prime_fragment	FALSE	canonical	3	957	junction_21	118.352985224418	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGAGTGGAGTTTTCT	NA	False	NA	10	True	AATAAA	-20	NA	143118965	143157441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ENSMUSG00000041718.17_131	chrX	+	3832	25	NIC	ENSMUSG00000041718.17	novel	2996	19	NA	NA	-36	0	combination_of_known_junctions	TRUE	canonical	3	134	junction_1	227.828696459765	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGAGTGGAGTTTTCT	NA	False	NA	10	True	AATAAA	-20	NA	143118828	143157441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_143118899_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ENSMUSG00000041718.17_159	chrX	+	3817	23	NIC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	118	-1	combination_of_known_junctions	FALSE	canonical	3	128	junction_18	237.652139178671	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAATGAGTGGAGTTTTC	NA	False	NA	9	True	AATAAA	-19	NA	143118982	143157440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ENSMUSG00000041718.17_2	chrX	+	4156	27	FSM	ENSMUSG00000041718.17	ENSMUST00000154827.8	4168	27	7	5	7	0	multi-exon	FALSE	canonical	3	214	junction_1	235.310423828037	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGAGTGGAGTTTTCT	NA	False	NA	10	True	AATAAA	-20	NA	143101025	143157441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ENSMUSG00000041718.17_38	chrX	+	3988	26	NIC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_21	266.015115360011	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGAGTGGAGTTTTCT	NA	False	NA	10	True	AATAAA	-20	NA	143101020	143157441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
ENSMUSG00000041720.15_1	chr16	-	6580	55	FSM	ENSMUSG00000041720.15	ENSMUST00000232232.2	6630	55	42	8	42	-7	multi-exon	FALSE	canonical	3	103	junction_39	24.3659232686811	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTGCTGCTTTTGTTT	NA	False	NA	-32	True	AATAAA	-7	NA	17223715	17098223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17098485_17098580_17098665_17098883_17098974_17099712_17099873_17100149_17100271_17100480_17100607_17100686_17100792_17101163_17101274_17102310_17102382_17102459_17102533_17103070_17103142_17104515_17104646_17108978_17109100_17110743_17110798_17111706_17111875_17113235_17113327_17114759_17114954_17115073_17115154_17115414_17115535_17117305_17117434_17118856_17118965_17120854_17121007_17121148_17121308_17125566_17125695_17125929_17126087_17127169_17127263_17130215_17130336_17133412_17133503_17134825_17134910_17135157_17135240_17136143_17136269_17136346_17136418_17140851_17140935_17142976_17143111_17143257_17143395_17143804_17143914_17166578_17166630_17168625_17168795_17170601_17170706_17171913_17172098_17172734_17172831_17173947_17174081_17175409_17175540_17176150_17176252_17176758_17176951_17178360_17178458_17181810_17181877_17185267_17185417_17191213_17191281_17194781_17195042_17196305_17196379_17199664_17199754_17204099_17204194_17207204_17207322_17223497
ENSMUSG00000041720.15_66	chr16	-	1099	8	FSM	ENSMUSG00000041720.15	ENSMUST00000231419.2	3855	8	44	2712	44	-2712	multi-exon	FALSE	canonical	3	160	junction_3	18.7442508192648	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAATCAGCGGAAGAC	NA	False	NA	-18	True	AATAAA	-8	NA	17223713	17185233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_17185417_17191213_17191281_17194781_17195042_17196305_17196379_17199664_17199754_17204099_17204194_17207204_17207322_17223497
ENSMUSG00000041729.16_0	chr9	-	3357	12	FSM	ENSMUSG00000041729.16	ENSMUST00000048043.12	3610	12	248	5	164	-5	multi-exon	FALSE	canonical	3	53	junction_11	4.75342416814595	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGCCATGTATCAAGCC	9606	False	NA	-12	True	AATAAA	-14	NA	62444078	62326778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_62328696_62333072_62333213_62333422_62333514_62333812_62333926_62335217_62335315_62336230_62336336_62336507_62336625_62338583_62338749_62339638_62339789_62361810_62361928_62396522_62396724_62443934
ENSMUSG00000041729.16_15	chr9	-	2866	9	ISM	ENSMUSG00000041729.16	ENSMUST00000048043.12	3610	12	104567	5	-3227	-5	3prime_fragment	FALSE	canonical	3	54	junction_1	4.35889894354067	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGCCATGTATCAAGCC	5146	False	NA	-12	True	AATAAA	-14	NA	62339759	62326778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_62328696_62333072_62333213_62333422_62333514_62333812_62333926_62335217_62335315_62336230_62336336_62336507_62336625_62338583_62338749_62339638
ENSMUSG00000041729.16_4	chr9	-	3258	12	NNC	ENSMUSG00000041729.16	novel	3610	12	NA	NA	12633	-4	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_11	15.3332135580422	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGCCATGTATCAAGCCA	NA	False	NA	-11	True	AATAAA	-15	NA	62405147	62326777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_62328696_62333072_62333213_62333422_62333514_62333812_62333926_62335217_62335315_62336230_62336336_62336507_62336625_62338583_62338749_62339638_62339789_62361810_62361928_62396522_62396724_62405103
ENSMUSG00000041729.16_6	chr9	-	3092	11	ISM	ENSMUSG00000041729.16	ENSMUST00000048043.12	3610	12	47727	2	21181	-2	3prime_fragment	FALSE	canonical	3	54	junction_1	4.29418211071678	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCATGTATCAAGCCATG	NA	False	NA	-9	True	AATAAA	-17	NA	62396599	62326775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_62328696_62333072_62333213_62333422_62333514_62333812_62333926_62335217_62335315_62336230_62336336_62336507_62336625_62338583_62338749_62339638_62339789_62361810_62361928_62396522
ENSMUSG00000041729.16_9	chr9	-	1851	1	ISM	ENSMUSG00000041729.16	ENSMUST00000048043.12	3610	12	115697	5	6654	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGCCATGTATCAAGCC	NA	False	NA	-12	True	AATAAA	-14	NA	62328629	62326778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_62326800_62328600
ENSMUSG00000041733.11_0	chr5	+	2000	7	FSM	ENSMUSG00000041733.11	ENSMUST00000040421.11	2037	7	31	6	2	-6	multi-exon	FALSE	canonical	3	495	junction_4	23.5442845152137	588	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGTCCTCAGATGTCAC	NA	False	NA	15	True	AATAAA	-13	NA	115417755	115435025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115417974_115421624_115421775_115422449_115422672_115428992_115429100_115432885_115432975_115433724_115433837_115433923
ENSMUSG00000041734.16_0	chr3	-	3451	16	FSM	ENSMUSG00000041734.16	ENSMUST00000107618.9	7278	16	152	3675	-45	2352	multi-exon	FALSE	canonical	3	30	junction_15	10.3850319637875	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTGTAGGGGTTTCCC	NA	False	NA	NA	False	AATAAA	-16	NA	87081902	86989582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_86990928_86991173_86991252_86992111_86992252_86992388_86992497_86993688_86993888_86995472_86995574_86995665_86995793_86996457_86996586_86996788_86996938_86997102_86997209_86997764_86997916_86999411_86999570_87002943_87003094_87005048_87005214_87048283_87048430_87081702
ENSMUSG00000041734.16_1	chr3	-	3121	1	ISM	ENSMUSG00000041734.16	ENSMUST00000159976.8	7236	16	92979	8	92829	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTACCATGTTCTGTG	9987	False	NA	NA	False	NA	NA	NA	86989028	86985907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_86985900_86989000
ENSMUSG00000041734.16_4	chr3	-	3514	16	FSM	ENSMUSG00000041734.16	ENSMUST00000159976.8	7236	16	39	3683	39	2352	multi-exon	FALSE	canonical	3	15	junction_15	12.9144191593049	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTGTAGGGGTTTCCC	NA	False	NA	NA	False	AATAAA	-16	NA	87081968	86989582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_86990928_86991173_86991252_86992111_86992252_86992388_86992497_86993688_86993888_86995472_86995574_86995665_86995793_86996457_86996586_86996788_86996938_86997102_86997209_86997764_86997916_86999411_86999570_87002943_87003094_87005048_87005214_87048283_87048427_87081702
ENSMUSG00000041736.8_0	chr15	+	820	4	FSM	ENSMUSG00000041736.8	ENSMUST00000047419.8	837	4	9	8	9	-8	multi-exon	FALSE	canonical	3	179	junction_1	54.5119762580257	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTAACAGACTCTGTAC	NA	False	NA	13	True	AATAAA	-13	NA	83447801	83458396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_83447846_83455585_83455797_83456400_83456540_83457970
ENSMUSG00000041736.8_2	chr15	+	881	4	NNC	ENSMUSG00000041736.8	novel	837	4	NA	NA	6066	-8	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	92.1013934024164	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTAACAGACTCTGTAC	NA	False	NA	13	True	AATAAA	-13	NA	83454141	83458396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_83454247_83455585_83455797_83456400_83456540_83457970
ENSMUSG00000041740.17_0	chr5	-	3101	17	FSM	ENSMUSG00000041740.17	ENSMUST00000112096.9	3112	17	4	7	1	-2	multi-exon	FALSE	canonical	3	1263	junction_14	135.987361545108	2472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGAGCCGCCTTCCCGA	NA	False	NA	-27	True	AATAAA	-13	NA	115410950	115379835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387230_115387455_115387582_115388028_115388190_115389124_115389262_115389335_115389521_115393408_115393500_115395032_115395233_115398177_115398375_115410315
ENSMUSG00000041740.17_1	chr5	-	3098	17	FSM	ENSMUSG00000041740.17	ENSMUST00000040555.15	3106	17	1	7	1	-2	multi-exon	FALSE	canonical	3	224	junction_1	338.888480689076	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGAGCCGCCTTCCCGA	NA	False	NA	-27	True	AATAAA	-13	NA	115410950	115379835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115380118_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387230_115387455_115387582_115388028_115388190_115389124_115389262_115389335_115389521_115393408_115393500_115395032_115395233_115398177_115398375_115410315
ENSMUSG00000041740.17_6	chr5	-	3105	17	FSM	ENSMUSG00000041740.17	ENSMUST00000112097.8	3476	17	7	364	1	-1	multi-exon	FALSE	canonical	3	78	junction_9	376.541410197803	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGAGCCGCCTTCCCGAC	NA	False	NA	-26	True	AATAAA	-14	NA	115410950	115379834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387233_115387455_115387582_115388028_115388190_115389124_115389262_115389335_115389521_115393408_115393500_115395032_115395233_115398177_115398375_115410315
ENSMUSG00000041747.4_0	chr13	-	2798	13	FSM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	59	1263	31	-1263	multi-exon	FALSE	canonical	3	368	junction_4	38.6584042896525	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCGAGCCGAGGATGTC	NA	False	NA	-41	True	AATAAA	-14	NA	98399490	98384615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395881_98395975_98397306_98397479_98399382
ENSMUSG00000041747.4_1	chr13	-	2038	1	Genic_Genomic	ENSMUSG00000041747.4	novel	NA	NA	NA	NA	5296	21	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAAAATGAAGTAGTTTC	NA	False	NA	-32	True	ATTAAA	-19	NA	98385369	98383331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_98383300_98385400
ENSMUSG00000041750.14_0	chr3	+	1508	6	FSM	ENSMUSG00000041750.14	ENSMUST00000194208.6	1527	6	-4	23	-4	-23	multi-exon	FALSE	canonical	2	3	junction_2	24.5568727650733	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAAAACTATAAGG	NA	False	NA	-21	True	AAGAAA	-19	NA	86893853	86897064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895863_86896457_86896555_86896642
ENSMUSG00000041750.14_1	chr3	+	2273	4	NIC	ENSMUSG00000041750.14	novel	1527	6	NA	NA	-5	3	intron_retention	FALSE	canonical	3	18	junction_1	21.9291789378647	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTATTGTTTTATTAAAT	NA	False	NA	5	True	AATAAA	-17	NA	86893852	86897090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_86894013_86894294_86895863_86896457_86896555_86896642
ENSMUSG00000041750.14_7	chr3	+	1416	6	FSM	ENSMUSG00000041750.14	ENSMUST00000192481.2	1131	6	-40	-245	-5	-2	multi-exon	FALSE	canonical	0	0	junction_2	25.3929123969662	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGATTTTATTGTTTTAT	NA	False	NA	0	True	AATAAA	-12	NA	86893852	86897085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_86894013_86894294_86894454_86894849_86895129_86895584_86895863_86896457_86896555_86896642
ENSMUSG00000041757.18_16	chr1	+	2896	12	ISM	ENSMUSG00000041757.18	ENSMUST00000190186.7	4492	17	9993	274	7956	-3	3prime_fragment	FALSE	canonical	3	14	junction_11	5.36594711395407	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAATACTAGTGAAGCAC	5254	False	NA	NA	False	AGTAAA	-16	NA	133209947	133228951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_133210005_133211008_133211105_133212617_133212730_133212984_133213125_133215207_133215338_133215511_133215619_133220089_133220267_133221443_133221612_133221691_133221826_133222300_133222447_133226657_133226782_133227446
ENSMUSG00000041757.18_19	chr1	+	3584	2	FSM	ENSMUSG00000041757.18	ENSMUST00000190208.2	3002	2	-979	397	-979	1	multi-exon	FALSE	canonical	3	14	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGTGAAGCACTCTCTGT	1665	False	NA	NA	False	AGTAAA	-23	NA	133224709	133228958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_133226782_133227446
ENSMUSG00000041757.18_20	chr1	+	2782	1	ISM	ENSMUSG00000041757.18	ENSMUST00000105082.9	7085	23	54246	311	2392	-311	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCATACAAGGAAATCTA	5036	False	NA	NA	False	NA	NA	NA	133228080	133230862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_133228100_133230900
ENSMUSG00000041757.18_30	chr1	+	3184	10	ISM	ENSMUSG00000041757.18	ENSMUST00000190186.7	4492	17	12660	-164	-6873	34	3prime_fragment	FALSE	canonical	3	14	junction_9	5.86473032017629	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCATAGTATCCATGTAA	7921	False	NA	NA	False	AATATA	-19	NA	133212614	133229389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_133212730_133212984_133213125_133215207_133215338_133215511_133215619_133220089_133220267_133221443_133221612_133221691_133221826_133222300_133222447_133226657_133226782_133227446
ENSMUSG00000041757.18_39	chr1	+	1909	4	ISM	ENSMUSG00000041757.18	ENSMUST00000190186.7	4492	17	21737	274	2204	-3	3prime_fragment	FALSE	canonical	3	14	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAATACTAGTGAAGCAC	NA	False	NA	NA	False	AGTAAA	-16	NA	133221691	133228951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_133221826_133222300_133222447_133226657_133226782_133227446
ENSMUSG00000041762.17_1	chr2	-	4893	17	FSM	ENSMUSG00000041762.17	ENSMUST00000076463.12	5061	17	167	1	6	-1	multi-exon	FALSE	canonical	0	0	junction_10	2.09165006633519	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTGACAGCTTTTCCTT	NA	False	NA	NA	False	AATAAA	-19	NA	73216749	73171850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_73174102_73178480_73178619_73179970_73180036_73182192_73182289_73183960_73184098_73186941_73187047_73192768_73192980_73194275_73194367_73194511_73194597_73197824_73197943_73198657_73198742_73200329_73200486_73201308_73201475_73203958_73204359_73212167_73212653_73213138_73213303_73216608
ENSMUSG00000041763.15_0	chr1	+	3969	29	FSM	ENSMUSG00000041763.15	ENSMUST00000188313.7	4631	29	2	660	2	4	multi-exon	FALSE	canonical	3	286	junction_23	40.426725727682	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGGCGTGTGGCTT	3314	False	NA	8	True	ATTAAA	-21	NA	43973176	44041500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
ENSMUSG00000041763.15_1	chr1	+	4009	30	FSM	ENSMUSG00000041763.15	ENSMUST00000087933.10	4649	30	9	631	1	4	multi-exon	FALSE	canonical	3	77	junction_23	82.0288369004111	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGGCGTGTGGCTT	3313	False	NA	8	True	ATTAAA	-21	NA	43973175	44041500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44024575_44024615_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
ENSMUSG00000041765.7_1	chr14	+	2120	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	19	0	19	0	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	8905	False	NA	16	True	AATAAA	-16	NA	122116050	122258446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041765.7_19	chr14	+	1714	6	NIC	ENSMUSG00000041765.7	novel	688	5	NA	NA	65	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	151.832275883621	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	2075	False	NA	16	True	AATAAA	-16	NA	122183790	122258446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_122183879_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041765.7_4	chr14	+	2080	8	NIC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_5	124.704057836208	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	8897	False	NA	16	True	AATAAA	-16	NA	122116042	122258446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041769.14_1	chr7	+	1928	8	FSM	ENSMUSG00000041769.14	ENSMUST00000155672.8	1938	8	4	6	4	-6	multi-exon	FALSE	canonical	3	482	junction_3	92.005767343628	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCCAAATGCCACTGCAG	NA	False	NA	11	True	AATAAA	-25	NA	138448327	138484777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ENSMUSG00000041769.14_2	chr7	+	2057	9	FSM	ENSMUSG00000041769.14	ENSMUST00000041097.13	2081	9	15	9	-12	-6	multi-exon	FALSE	canonical	3	482	junction_4	89.4111814875522	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCCAAATGCCACTGCAG	NA	False	NA	11	True	AATAAA	-25	NA	138448102	138484777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_138448245_138448340_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ENSMUSG00000041769.14_4	chr7	+	1893	8	NIC	ENSMUSG00000041769.14	novel	2081	9	NA	NA	13	-6	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	212.306863011144	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCCAAATGCCACTGCAG	NA	False	NA	11	True	AATAAA	-25	NA	138448100	138484777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_138448245_138448340_138448434_138470138_138470237_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ENSMUSG00000041773.9_1	chr13	+	4734	3	FSM	ENSMUSG00000041773.9	ENSMUST00000041623.9	4737	3	1	2	1	-2	multi-exon	FALSE	canonical	3	5	junction_1	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCATTGTATTGTGAG	NA	False	NA	20	True	AATAAA	-14	NA	97377613	97389540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_97378038_97381478_97383293_97387044
ENSMUSG00000041773.9_2	chr13	+	1458	1	Genic_Genomic	ENSMUSG00000041773.9	novel	NA	NA	NA	NA	10475	3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTATTGTGAGTTTTT	NA	False	NA	25	True	AATAAA	-19	NA	97388087	97389545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_97388100_97389500
ENSMUSG00000041773.9_4	chr13	+	2695	2	ISM	ENSMUSG00000041773.9	ENSMUST00000041623.9	4737	3	5481	2	5481	-2	3prime_fragment	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCATTGTATTGTGAG	NA	False	NA	20	True	AATAAA	-14	NA	97383093	97389540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_97383293_97387044
ENSMUSG00000041774.17_0	chr16	+	1296	5	FSM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	-2	3	1	-3	multi-exon	FALSE	canonical	3	70	junction_3	15.4171171105366	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTGGCTGGTTTATAAA	NA	False	NA	9	True	AATAAA	-13	NA	16964840	16966707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660_16965839_16966019
ENSMUSG00000041774.17_1	chr16	+	1482	4	ISM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	-7	3	-4	-3	intron_retention	FALSE	canonical	3	70	junction_3	17.4547032821147	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTGGCTGGTTTATAAA	NA	False	NA	9	True	AATAAA	-13	NA	16964835	16966707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660
ENSMUSG00000041774.17_2	chr16	+	1582	3	FSM	ENSMUSG00000041774.17	ENSMUST00000232344.2	1580	3	-5	3	-5	-3	multi-exon	TRUE	canonical	3	101	junction_2	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTGGCTGGTTTATAAA	NA	False	NA	9	True	AATAAA	-13	NA	16964834	16966707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16965011_16965096_16965257_16965461
ENSMUSG00000041774.17_9	chr16	+	1112	1	NIC	ENSMUSG00000041774.17	novel	1713	8	NA	NA	749	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTGGCTGGTTTATAAA	NA	False	NA	9	True	AATAAA	-13	NA	16965595	16966707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_16965600_16966700
ENSMUSG00000041775.8_0	chr7	-	1483	2	FSM	ENSMUSG00000041775.8	ENSMUST00000075667.5	1502	2	4	15	1	-15	multi-exon	FALSE	canonical	3	55	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAACAAAAAATCCAC	NA	False	NA	13	True	NA	NA	NA	138447985	138437576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_138438760_138447685
ENSMUSG00000041775.8_1	chr7	-	2374	1	NIC	ENSMUSG00000041775.8	novel	1883	3	NA	NA	8009	3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTTTAATTTAAGTGG	NA	False	NA	-14	True	NA	NA	NA	138439977	138437603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_138437600_138440000
ENSMUSG00000041777.13_1	chr2	-	1884	9	NIC	ENSMUSG00000041777.13	novel	2821	10	NA	NA	20	-772	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	29.521178838251	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATCAAAAAGCATGTCCTT	NA	False	NA	NA	False	AATAAA	-8	NA	73142891	73114220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136283_73136620_73136686_73137198_73137273_73140800_73140896_73142760
ENSMUSG00000041777.13_10	chr2	-	2732	7	NIC	ENSMUSG00000041777.13	novel	1113	9	NA	NA	28	-767	intron_retention	FALSE	canonical	3	42	junction_4	17.8737858950537	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCATGTCCTTAAGAC	NA	False	NA	NA	False	AATAAA	-13	NA	73142883	73114215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73137273_73140800_73140896_73142760
ENSMUSG00000041779.6_0	chr1	-	2668	11	FSM	ENSMUSG00000041779.6	ENSMUST00000037998.6	6492	11	4	3820	4	-3820	multi-exon	FALSE	canonical	3	66	junction_1	7.25534285888682	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATTCTGCCTGGCCTTC	NA	False	NA	NA	False	NA	NA	NA	21149449	21070342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_21071860_21073193_21073358_21074061_21074206_21074449_21074555_21075790_21075862_21076373_21076459_21077076_21077136_21083016_21083134_21083625_21083736_21107620_21107685_21149217
ENSMUSG00000041779.6_2	chr1	-	4926	3	ISM	ENSMUSG00000041779.6	ENSMUST00000037998.6	6492	11	75340	627	39767	-627	3prime_fragment	FALSE	canonical	3	66	junction_1	8.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCGGGACATTGTCAGTG	5089	False	NA	NA	False	AATAAA	-39	NA	21074113	21067149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_21071860_21073193_21073358_21074061
ENSMUSG00000041779.6_3	chr1	-	3930	1	ISM	ENSMUSG00000041779.6	ENSMUST00000037998.6	6492	11	78986	15	43413	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATTGGTCATAACAATC	8735	False	NA	-20	True	AATAAA	-9	NA	21070467	21066537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_21066500_21070500
ENSMUSG00000041779.6_8	chr1	-	223	1	ISM	ENSMUSG00000041779.6	ENSMUST00000037998.6	6492	11	77632	5076	42059	2938	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGCTCCCCTGAGCCGCC	7381	False	NA	-6	True	AATAAA	-17	NA	21071821	21071598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_21071600_21071800
ENSMUSG00000041781.10_35	chr12	+	2558	1	ISM	ENSMUSG00000041781.10	ENSMUST00000047357.10	5732	15	27876	3	27876	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATGTCATGTTTCTTGTG	NA	False	NA	8	True	NA	NA	NA	101970122	101972680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_101970100_101972700
ENSMUSG00000041781.10_4	chr12	+	3597	15	FSM	ENSMUSG00000041781.10	ENSMUST00000047357.10	5732	15	1	2134	1	-2134	multi-exon	FALSE	canonical	3	176	junction_8	15.7246718923623	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGTTTTTTAAGTTTAT	NA	False	NA	12	True	ATTAAA	-24	NA	101942247	101970549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_101942394_101948172_101948355_101949434_101949595_101949678_101949785_101951479_101951610_101953516_101953633_101954891_101955080_101956047_101956339_101963077_101963179_101963513_101963715_101964795_101964949_101965631_101965858_101966935_101967236_101968886_101969022_101969387
ENSMUSG00000041782.15_0	chr1	+	2298	10	FSM	ENSMUSG00000041782.15	ENSMUST00000038760.10	2993	10	316	379	316	256	multi-exon	FALSE	canonical	3	102	junction_3	17.5119007154183	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAGTGTCTGGTAATGTC	5934	False	NA	14	True	NA	NA	NA	135746651	135760701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_135746755_135753492_135753631_135754901_135755785_135756452_135756558_135757426_135757471_135758637_135758711_135758820_135758959_135759262_135759350_135759611_135759687_135760049
ENSMUSG00000041782.15_7	chr1	+	1906	8	ISM	ENSMUSG00000041782.15	ENSMUST00000038760.10	2993	10	8720	376	-2677	259	3prime_fragment	FALSE	canonical	3	102	junction_1	11.9249352884053	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTCTGGTAATGTCGAT	3865	False	NA	17	True	NA	NA	NA	135755055	135760704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_135755785_135756452_135756558_135757426_135757471_135758637_135758711_135758820_135758959_135759262_135759350_135759611_135759687_135760049
ENSMUSG00000041789.8_1	chr18	-	3744	3	FSM	ENSMUSG00000041789.8	ENSMUST00000067450.3	2101	3	63	-1706	63	1706	multi-exon	FALSE	canonical	1	1	junction_1	4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGATGGTCCTGGTGCT	NA	False	NA	NA	False	AATAAA	-5	NA	62889323	62883038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_62886405_62888196_62888246_62888994
ENSMUSG00000041798.16_1	chr11	-	2339	10	FSM	ENSMUSG00000041798.16	ENSMUST00000102920.4	2727	10	388	0	388	0	multi-exon	FALSE	canonical	1	1	junction_2	1.4142135623731	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGGCCTGCTGATTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	5899693	5850822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5851815_5852084_5852319_5853099_5853256_5854360_5854545_5856476_5856577_5856682_5856779_5859082_5859203_5860277_5860433_5860861_5861025_5899554
ENSMUSG00000041801.6_0	chr1	+	1429	2	FSM	ENSMUSG00000041801.6	ENSMUST00000038945.6	1435	2	1	5	1	-5	multi-exon	FALSE	canonical	3	639	junction_1	0	677	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACGCTGTCTACTGAGTGA	6746	False	NA	17	True	AATGAA	-24	NA	135693857	135696869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_135694633_135696215
ENSMUSG00000041809.6_0	chr1	+	2209	11	FSM	ENSMUSG00000041809.6	ENSMUST00000038447.6	2146	11	-70	7	-8	-7	multi-exon	FALSE	canonical	3	9	junction_5	4.06939798987516	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAAGACTGGTGCCTTA	NA	False	NA	5	True	NA	NA	NA	21021841	21061058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_21022021_21025558_21025781_21030353_21030642_21031376_21031527_21037547_21037741_21042998_21043220_21045122_21045264_21048866_21049081_21049633_21049782_21059591_21059827_21060840
ENSMUSG00000041815.15_0	chr15	-	1366	1	ISM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	22041	2	8568	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGAGCTATAATGTCT	NA	False	NA	-13	True	AATAAA	-15	NA	83011544	83010178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_83010200_83011500
ENSMUSG00000041815.15_1	chr15	-	3140	8	FSM	ENSMUSG00000041815.15	ENSMUST00000100375.11	3157	8	16	1	14	-1	multi-exon	FALSE	canonical	3	86	junction_6	194.457277192347	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTGAGCTATAATGTC	NA	False	NA	-14	True	AATAAA	-14	NA	83033516	83010179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
ENSMUSG00000041815.15_2	chr15	-	3190	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	13	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	199.638995176448	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGAGCTATAATGTCT	NA	False	NA	-13	True	AATAAA	-15	NA	83033517	83010178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
ENSMUSG00000041815.15_3	chr15	-	3229	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	68	2	13	0	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGAGCTATAATGTCT	NA	False	NA	-13	True	AATAAA	-15	NA	83033517	83010178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
ENSMUSG00000041815.15_4	chr15	-	3103	9	NNC	ENSMUSG00000041815.15	novel	3157	8	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	258.479901297954	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGAGCTATAATGTCT	NA	False	NA	-13	True	AATAAA	-15	NA	83033517	83010178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
ENSMUSG00000041817.15_10	chr13	+	5276	12	NIC	ENSMUSG00000041817.15	novel	4547	13	NA	NA	-50	-719	combination_of_known_splicesites	FALSE	canonical	2	10	junction_2	80.1011756911685	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAGTCTTGTGTTTTAA	8667	False	NA	NA	False	ATTAAA	-19	NA	97208100	97266802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_97208220_97228325_97228461_97230569_97230656_97234047_97234220_97243461_97243642_97246530_97246660_97247803_97247911_97250146_97250187_97250616_97250768_97254882_97255040_97259199_97259401_97263003
ENSMUSG00000041817.15_5	chr13	+	4609	13	FSM	ENSMUSG00000041817.15	ENSMUST00000042517.8	4547	13	-64	2	-64	-2	multi-exon	FALSE	canonical	3	256	junction_9	17.0739811799514	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTCAGTCTTCTCTGT	8653	False	NA	12	True	AATAAA	-18	NA	97208086	97266021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_97208220_97228325_97228461_97230098_97230199_97230569_97230656_97234047_97234220_97243461_97243642_97246530_97246660_97247803_97247911_97250146_97250187_97250616_97250768_97254882_97255040_97259199_97259401_97263003
ENSMUSG00000041817.15_58	chr13	+	2207	1	ISM	ENSMUSG00000041817.15	ENSMUST00000169863.9	6013	13	60021	1500	55664	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTCAGTCTTCTCTGT	NA	False	NA	12	True	AATAAA	-18	NA	97263814	97266021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_97263800_97266000
ENSMUSG00000041817.15_9	chr13	+	1845	12	ISM	ENSMUSG00000041817.15	ENSMUST00000042517.8	4547	13	-64	6369	-64	-6369	5prime_fragment	FALSE	canonical	3	256	junction_9	16.9856526720116	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTTGAGTACTTGATG	8653	False	NA	NA	False	AATAAA	-18	NA	97208086	97259654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_97208220_97228325_97228461_97230098_97230199_97230569_97230656_97234047_97234220_97243461_97243642_97246530_97246660_97247803_97247911_97250146_97250187_97250616_97250768_97254882_97255040_97259199
ENSMUSG00000041827.16_0	chr5	+	2099	6	FSM	ENSMUSG00000041827.16	ENSMUST00000112143.4	2181	6	78	4	78	-1	multi-exon	FALSE	canonical	3	18	junction_2	3.38230690505755	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGAGTGGTCCTCATTTG	7936	False	NA	2	True	NA	NA	NA	115061400	115075970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115061669_115066081_115066365_115067898_115068063_115070781_115071024_115073979_115074128_115074976
ENSMUSG00000041831.18_0	chr17	+	2650	16	NIC	ENSMUSG00000041831.18	novel	2244	16	NA	NA	7	3	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	13.5522035928561	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCCCAGCATTTATTAA	NA	False	NA	9	True	AATAAA	-18	NA	6930419	7005446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6930610_6940859_6941395_6943610_6943830_6954660_6954726_6967051_6967104_6968636_6968704_6970278_6970358_6973292_6973418_6976495_6976631_6982782_6982962_6995637_6995741_7000350_7000522_7001864_7001971_7002776_7002874_7003809_7004016_7005125
ENSMUSG00000041831.18_10	chr17	+	2127	15	ISM	ENSMUSG00000041831.18	ENSMUST00000097430.10	2423	16	14701	-211	184	3	3prime_fragment	FALSE	canonical	3	23	junction_1	9.67033123126861	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCCCAGCATTTATTAA	NA	False	NA	9	True	AATAAA	-18	NA	6941192	7005446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_6941395_6943610_6943830_6954660_6954726_6967051_6967104_6968636_6968704_6970278_6970358_6973292_6973418_6976495_6976631_6982782_6982962_6995637_6995741_7000350_7000522_7001864_7001971_7002776_7002874_7003809_7004016_7005125
ENSMUSG00000041831.18_11	chr17	+	3747	14	NIC	ENSMUSG00000041831.18	novel	2423	16	NA	NA	-68	1	intron_retention	FALSE	canonical	3	23	junction_1	9.86716508149945	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAACTCCCAGCATTTATT	NA	False	NA	7	True	AATAAA	-16	NA	6940913	7005444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6941395_6943610_6943830_6954660_6954726_6967051_6967104_6968636_6968704_6970278_6970358_6973292_6973418_6976495_6976631_6982782_6982962_6995637_6995741_7000350_7001971_7002776_7002874_7003809_7004016_7005125
ENSMUSG00000041831.18_14	chr17	+	2127	15	NNC	ENSMUSG00000041831.18	novel	1504	9	NA	NA	-398	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	14.7608486565382	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCCCAGCATTTATTAA	994	False	NA	9	True	AATAAA	-18	NA	6942921	7005446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_6943124_6943610_6943830_6954660_6954726_6967051_6967104_6968636_6968704_6970278_6970358_6973292_6973418_6976495_6976631_6982782_6982962_6995637_6995741_7000350_7000522_7001864_7001971_7002776_7002874_7003809_7004016_7005125
ENSMUSG00000041831.18_17	chr17	+	1797	13	NIC	ENSMUSG00000041831.18	novel	2423	16	NA	NA	351	2	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	15.2797978462486	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACTCCCAGCATTTATTA	1743	False	NA	8	True	AATAAA	-17	NA	6943670	7005445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6943830_6954660_6954726_6967051_6967104_6970278_6970358_6973292_6973418_6976495_6976631_6982782_6982962_6995637_6995741_7000350_7000522_7001864_7001971_7002776_7002874_7003809_7004016_7005125
ENSMUSG00000041831.18_5	chr17	+	2110	15	NIC	ENSMUSG00000041831.18	novel	1504	9	NA	NA	12	3	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	14.0407570003493	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCCCAGCATTTATTAA	NA	False	NA	9	True	AATAAA	-18	NA	6930424	7005446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_6930610_6943610_6943830_6954660_6954726_6967051_6967104_6968636_6968704_6970278_6970358_6973292_6973418_6976495_6976631_6982782_6982962_6995637_6995741_7000350_7000522_7001864_7001971_7002776_7002874_7003809_7004016_7005125
ENSMUSG00000041837.5_0	chr9	+	2402	5	FSM	ENSMUSG00000041837.5	ENSMUST00000048184.4	2419	5	15	2	15	-2	multi-exon	FALSE	canonical	3	267	junction_1	28.3846349280733	538	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTTTGCCCCTGATTTA	NA	False	NA	40	True	AATAAA	-23	NA	65253400	65266923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65254291_65261891_65262031_65263526_65263764_65263999_65264088_65265875
ENSMUSG00000041840.9_12	chr18	-	2305	7	NIC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	15	-6	intron_retention	FALSE	canonical	3	1190	junction_4	90.0729642505946	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCATTTCTTGTTATC	NA	False	NA	-8	True	AATACA	-12	NA	77855465	77845274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77849817_77851772_77851909_77854563_77854739_77855419
ENSMUSG00000041840.9_8	chr18	-	985	9	FSM	ENSMUSG00000041840.9	ENSMUST00000048192.9	1003	9	11	7	11	-6	multi-exon	FALSE	canonical	3	1190	junction_6	88.5180066427165	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCATTTCTTGTTATC	NA	False	NA	-8	True	AATACA	-12	NA	77855469	77845274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ENSMUSG00000041841.9_0	chr15	+	362	4	FSM	ENSMUSG00000041841.9	ENSMUST00000045356.9	835	4	6	467	6	-2	multi-exon	FALSE	canonical	3	15185	junction_3	3886.71174930972	1466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCTGTGGTGATCTA	2254	False	NA	32	True	AATAAA	-13	NA	5146132	5148155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_5146167_5146768_5146905_5147100_5147186_5148048
ENSMUSG00000041841.9_7	chr15	+	322	3	FSM	ENSMUSG00000041841.9	ENSMUST00000227635.2	925	3	599	4	7	-2	multi-exon	FALSE	canonical	3	15185	junction_2	4434.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCTGTGGTGATCTA	2896	False	NA	32	True	AATAAA	-13	NA	5146774	5148155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_5146905_5147100_5147186_5148048
ENSMUSG00000041842.16_0	chr3	-	4083	12	FSM	ENSMUSG00000041842.16	ENSMUST00000107689.7	5918	12	-4	1839	-4	-2	multi-exon	FALSE	canonical	2	2	junction_2	2.63165724111457	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCAGAGTGAAATGCCT	NA	False	NA	NA	False	AATAAA	-18	NA	84387740	84351343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_84353838_84356056_84356222_84358676_84358795_84360823_84360895_84362093_84362202_84362294_84362366_84364301_84364403_84364492_84364579_84371578_84371682_84372728_84372791_84381446_84382085_84387674
ENSMUSG00000041845.12_0	chr19	-	2315	4	FSM	ENSMUSG00000041845.12	ENSMUST00000117462.2	1495	4	0	-820	0	612	multi-exon	FALSE	canonical	3	13	junction_1	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACCCAAAAAC	9159	False	NA	NA	False	NA	NA	NA	4489449	4474874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4476790_4482082_4482193_4482795_4482884_4489247
ENSMUSG00000041845.12_1	chr19	-	1116	5	FSM	ENSMUSG00000041845.12	ENSMUST00000048197.10	1344	5	20	208	9	0	multi-exon	FALSE	canonical	3	9	junction_1	4.02336923485777	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTAGTGTCCTGACTCTTC	9168	False	NA	-4	True	ACTAAA	-15	NA	4489440	4475694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4476285_4476654_4476790_4482082_4482193_4482795_4482884_4489247
ENSMUSG00000041846.16_0	chr12	-	4451	15	FSM	ENSMUSG00000041846.16	ENSMUST00000163095.9	4083	15	24	-392	-10	-11	multi-exon	FALSE	canonical	3	147	junction_8	127.060085416792	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAGAGAAATTGTATTAA	8801	False	NA	-35	True	AATAAA	-14	NA	101049932	101005781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101015918_101016078_101017592_101017696_101017789_101017922_101019687_101019844_101021788_101021906_101022008_101022087_101024582_101025201_101031242_101031342_101034895_101034952_101048987
ENSMUSG00000041846.16_14	chr12	-	4593	16	NIC	ENSMUSG00000041846.16	novel	4083	15	NA	NA	1	-14	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	206.879825556341	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGTAAGAGAAATTGTAT	8812	False	NA	-38	True	AATAAA	-11	NA	101049921	101005784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101011784_101011941_101015918_101016078_101017592_101017696_101017789_101017922_101019687_101019844_101021788_101021906_101022008_101022087_101024582_101025201_101031242_101031342_101034895_101034952_101048987
ENSMUSG00000041846.16_2	chr12	-	4410	15	FSM	ENSMUSG00000041846.16	ENSMUST00000048305.10	4516	15	-8	114	-8	-11	multi-exon	FALSE	canonical	3	387	junction_8	78.1559142917253	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAGAGAAATTGTATTAA	8803	False	NA	-35	True	AATAAA	-14	NA	101049930	101005781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101015918_101016078_101017592_101017696_101017789_101017922_101019726_101019844_101021788_101021906_101022008_101022087_101024582_101025201_101031242_101031342_101034895_101034952_101048987
ENSMUSG00000041846.16_6	chr12	-	4571	16	NIC	ENSMUSG00000041846.16	novel	4516	15	NA	NA	-10	-8	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	188.655052646063	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGAAATTGTATTAATTG	8801	False	NA	-32	True	AATAAA	-17	NA	101049932	101005778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101011784_101011941_101015918_101016078_101017592_101017696_101017789_101017922_101019726_101019844_101021788_101021906_101022008_101022087_101024582_101025201_101031242_101031342_101034895_101034952_101048987
ENSMUSG00000041849.8_4	chr15	-	4533	4	FSM	ENSMUSG00000041849.8	ENSMUST00000118365.3	5995	4	-4	1466	-4	-1466	multi-exon	FALSE	canonical	0	0	junction_3	2.94392028877595	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGGTACTGATTTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	5138025	5126928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_5130578_5134384_5134919_5137569_5137859_5137964
ENSMUSG00000041852.16_0	chr15	-	4050	4	ISM	ENSMUSG00000041852.16	ENSMUST00000048966.7	7417	5	58050	18	45727	-18	3prime_fragment	FALSE	canonical	3	113	junction_3	13.9522996909709	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTGTGTCCTTTTTCAT	NA	False	NA	-23	True	AATAAA	-10	NA	82738285	82692654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_82693989_82699811_82699862_82709431_82709526_82735713
ENSMUSG00000041852.16_1	chr15	-	1093	1	ISM	ENSMUSG00000041852.16	ENSMUST00000048966.7	7417	5	102595	11	90272	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTTTTCATTTACTCT	NA	False	NA	-16	True	AATAAA	-17	NA	82693740	82692647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_82692600_82693700
ENSMUSG00000041852.16_4	chr15	-	6871	5	NIC	ENSMUSG00000041852.16	novel	7417	5	NA	NA	31	-486	combination_of_known_junctions	FALSE	canonical	3	28	junction_4	45.3727616527802	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACTATTTATTTATTTT	9199	False	NA	-8	True	AATAAA	-16	NA	82783981	82693312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_82693989_82699811_82699862_82709431_82709526_82735713_82741486_82783702
ENSMUSG00000041852.16_7	chr15	-	1699	4	NIC	ENSMUSG00000041852.16	novel	7417	5	NA	NA	26	-81	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	61.3568795382121	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATTTAAAAAAACAAAAATC	9194	False	NA	-86	True	GATAAA	-23	NA	82783986	82692717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_82693989_82699811_82699862_82709431_82709526_82783702
ENSMUSG00000041852.16_9	chr15	-	2262	5	ISM	ENSMUSG00000041852.16	ENSMUST00000109510.10	7323	6	59934	-172	47638	-18	3prime_fragment	FALSE	canonical	3	9	junction_2	50.4653346367583	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTGTGTCCTTTTTCAT	NA	False	NA	-23	True	AATAAA	-10	NA	82736374	82692654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_82693989_82698681_82698805_82699811_82699862_82709431_82709526_82735713
ENSMUSG00000041859.11_1	chr1	-	2926	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	63	42	11	-4	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	5129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTTCATGCTTTGTGCT	NA	False	NA	-16	True	AGTAAA	-20	NA	20890473	20873233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
ENSMUSG00000041870.18_0	chr5	+	3433	15	FSM	ENSMUSG00000041870.18	ENSMUST00000102578.11	3717	15	276	8	8	-8	multi-exon	FALSE	canonical	3	367	junction_6	30.6590866112599	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAAGGATTGTGAGTTT	1122	False	NA	21	True	AGTAAA	-11	NA	114913013	114943875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_114913386_114924001_114924135_114924745_114924871_114927368_114927415_114929324_114929469_114930160_114930351_114933741_114933809_114934894_114934977_114935913_114935976_114936581_114936713_114937444_114937603_114938765_114938874_114939716_114939878_114941617_114941686_114942289
ENSMUSG00000041870.18_2	chr5	+	3436	15	NIC	ENSMUSG00000041870.18	novel	3717	15	NA	NA	8	-8	combination_of_known_junctions	FALSE	canonical	3	45	junction_9	98.811508872774	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAAGGATTGTGAGTTT	1122	False	NA	21	True	AGTAAA	-11	NA	114913013	114943875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_114913386_114924001_114924135_114924745_114924871_114927368_114927415_114929324_114929469_114930160_114930351_114933741_114933809_114934894_114934977_114935913_114935976_114936578_114936713_114937444_114937603_114938765_114938874_114939716_114939878_114941617_114941686_114942289
ENSMUSG00000041879.14_0	chr1	-	2393	1	ISM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	45790	5	2850	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTGTCTCCTGTCAGTT	1297	False	NA	-9	True	AATAAA	-16	NA	135312447	135310054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_135310100_135312400
ENSMUSG00000041879.14_15	chr1	-	4136	25	FSM	ENSMUSG00000041879.14	ENSMUST00000161189.8	4189	25	50	3	-8	-3	multi-exon	TRUE	canonical	0	0	junction_23	161.892405756622	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTAGTCTGCATACTCT	NA	False	NA	-22	True	AGTAAA	-16	NA	135358179	135312213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135354668_135354780_135358005
ENSMUSG00000041879.14_2	chr1	-	4028	24	FSM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	51	2168	10	-7	multi-exon	FALSE	canonical	3	518	junction_15	35.6964730086209	1202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAATTTAGTCTGCATA	NA	False	NA	-26	True	AGTAAA	-12	NA	135358186	135312217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
ENSMUSG00000041881.14_0	chr17	+	475	4	FSM	ENSMUSG00000041881.14	ENSMUST00000048249.8	528	4	44	9	3	-1	multi-exon	FALSE	canonical	3	7458	junction_2	513.174650798558	1214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCAATCTGTCTTTTCT	4118	False	NA	24	True	AATATA	-15	NA	34043589	34057282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34043655_34044574_34044625_34048640_34048791_34057072
ENSMUSG00000041881.14_1	chr17	+	425	3	FSM	ENSMUSG00000041881.14	ENSMUST00000173132.8	438	3	12	1	3	-1	multi-exon	FALSE	canonical	3	616	junction_1	4049.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCAATCTGTCTTTTCT	4118	False	NA	24	True	AATATA	-15	NA	34043589	34057282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34043655_34048640_34048791_34057072
ENSMUSG00000041889.8_0	chr1	-	1447	5	FSM	ENSMUSG00000041889.8	ENSMUST00000041240.4	1763	5	209	107	49	-104	multi-exon	FALSE	canonical	3	26	junction_2	2.8613807855649	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATCTGGGTCTCTTCACT	NA	False	NA	-104	True	TATAAA	-31	NA	135302766	135298901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_135299735_135299934_135300103_135300889_135301024_135302115_135302288_135302626
ENSMUSG00000041889.8_1	chr1	-	1001	3	FSM	ENSMUSG00000041889.8	ENSMUST00000159918.2	1404	3	6	397	6	-397	multi-exon	FALSE	canonical	3	26	junction_2	3.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTGGAATCACTGGCCC	NA	False	NA	-8	True	ATTAAA	-19	NA	135301182	135299194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_135299735_135299934_135300103_135300889
ENSMUSG00000041889.8_3	chr1	-	1006	4	ISM	ENSMUSG00000041889.8	ENSMUST00000041240.4	1763	5	690	406	530	-403	3prime_fragment	FALSE	canonical	3	26	junction_2	3.09120616516523	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCATCAGTGGAATCAC	NA	False	NA	-14	True	ATTAAA	-13	NA	135302285	135299200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_135299735_135299934_135300103_135300889_135301024_135302115
ENSMUSG00000041890.18_0	chr5	-	2865	19	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	-5	-7	combination_of_known_junctions	FALSE	canonical	3	71	junction_11	54.7531215638675	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCATGCTGATGTCTCC	NA	False	NA	-9	True	TATAAA	-7	NA	114911561	114867642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ENSMUSG00000041890.18_1	chr5	-	2917	19	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	-1	-8	combination_of_known_junctions	FALSE	canonical	3	47	junction_4	58.7622327690158	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCATCATGCTGATGTCTC	NA	False	NA	-10	True	TATAAA	-6	NA	114911557	114867643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ENSMUSG00000041890.18_12	chr5	-	2863	19	FSM	ENSMUSG00000041890.18	ENSMUST00000112185.9	5032	19	-3	2172	-3	-4	multi-exon	FALSE	canonical	3	90	junction_6	46.75943160951	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGCTGATGTCTCCATA	NA	False	NA	-6	True	TATAAA	-10	NA	114911559	114867639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ENSMUSG00000041890.18_2	chr5	-	3012	20	FSM	ENSMUSG00000041890.18	ENSMUST00000086564.11	2984	20	-35	7	-2	-7	multi-exon	FALSE	canonical	3	71	junction_12	54.5305322490843	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCATGCTGATGTCTCC	NA	False	NA	-9	True	TATAAA	-7	NA	114911558	114867642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ENSMUSG00000041890.18_25	chr5	-	2767	18	FSM	ENSMUSG00000041890.18	ENSMUST00000043283.14	4938	18	-9	2180	-6	-16	multi-exon	FALSE	canonical	3	47	junction_4	65.8330172418791	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATTTTACCATCATGCT	NA	False	NA	-18	True	NA	NA	NA	114911562	114867651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ENSMUSG00000041890.18_3	chr5	-	2523	18	NIC	ENSMUSG00000041890.18	novel	5032	19	NA	NA	-10	34	combination_of_known_junctions	FALSE	canonical	3	47	junction_4	59.1705060729358	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTTAAAAACAAAAACAAAA	NA	False	NA	NA	False	AGTAAA	-29	NA	114911566	114867896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ENSMUSG00000041890.18_5	chr5	-	2930	19	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	-10	-7	combination_of_known_junctions	FALSE	canonical	3	47	junction_4	64.898900483372	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCATGCTGATGTCTCC	NA	False	NA	-9	True	TATAAA	-7	NA	114911566	114867642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ENSMUSG00000041890.18_6	chr5	-	3013	20	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	-3	-4	combination_of_known_junctions	FALSE	canonical	3	114	junction_6	47.232729625996	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGCTGATGTCTCCATA	NA	False	NA	-6	True	TATAAA	-10	NA	114911559	114867639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
ENSMUSG00000041891.17_0	chr18	-	3539	14	FSM	ENSMUSG00000041891.17	ENSMUST00000048260.15	3581	14	20	22	-1	-3	multi-exon	FALSE	canonical	3	538	junction_1	125.2370060817	1213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAATTGGTTTTTTCCTC	NA	False	NA	-25	True	AATAAA	-12	NA	66135690	66113830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_66115782_66116895_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ENSMUSG00000041891.17_1	chr18	-	1675	1	ISM	ENSMUSG00000041891.17	ENSMUST00000048260.15	3581	14	20207	20	11228	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTGGTTTTTTCCTCCA	NA	False	NA	-23	True	AATAAA	-14	NA	66115503	66113828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_66113800_66115500
ENSMUSG00000041891.17_3	chr18	-	4653	13	FSM	ENSMUSG00000041891.17	ENSMUST00000236866.2	4676	13	20	3	-1	-3	multi-exon	FALSE	canonical	3	864	junction_5	66.5663307452716	697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAATTGGTTTTTTCCTC	NA	False	NA	-25	True	AATAAA	-12	NA	66135690	66113830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ENSMUSG00000041895.16_0	chr11	-	2000	13	FSM	ENSMUSG00000041895.16	ENSMUST00000103060.10	2050	13	47	3	47	-3	multi-exon	FALSE	canonical	1	33	junction_5	23.2491039253846	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTGTGAGTTGTTTACA	NA	False	NA	-9	True	AATAAA	-12	NA	109502211	109464159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_109464794_109467882_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
ENSMUSG00000041895.16_2	chr11	-	5092	12	FSM	ENSMUSG00000041895.16	ENSMUST00000047186.10	3338	12	41	-1795	41	-6	multi-exon	FALSE	canonical	1	33	junction_4	24.2817484087354	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCATTTGTGAGTTGTTT	NA	False	NA	-12	True	AATAAA	-9	NA	109502217	109464162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
ENSMUSG00000041895.16_4	chr11	-	1180	1	NIC	ENSMUSG00000041895.16	novel	2050	13	NA	NA	36921	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGAGTTGTTTACATT	8436	False	NA	-7	True	AATAAA	-14	NA	109465337	109464157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_109464200_109465300
ENSMUSG00000041907.10_0	chr1	+	1944	2	FSM	ENSMUSG00000041907.10	ENSMUST00000188621.2	2046	2	94	8	3	-8	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGATGAATGTGTGAG	NA	False	NA	NA	False	AGTAAA	-7	NA	42992125	42994307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_42992394_42992631
ENSMUSG00000041911.4_0	chr2	+	3177	3	FSM	ENSMUSG00000041911.4	ENSMUST00000037119.4	4111	3	927	7	-61	-7	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGAGCCATTGCCTCC	2733	False	NA	NA	False	AGTAAA	-12	NA	71359383	71364317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_71360651_71361300_71361501_71362607
ENSMUSG00000041912.13_2	chr3	+	1269	6	FSM	ENSMUSG00000041912.13	ENSMUST00000200486.5	1231	6	-48	10	-4	-10	multi-exon	FALSE	canonical	2	27	junction_5	8.74070935336486	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTACACATATTTTATGT	NA	False	NA	NA	False	ATTAAA	-16	NA	94320575	94333685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097
ENSMUSG00000041912.13_3	chr3	+	2517	14	FSM	ENSMUSG00000041912.13	ENSMUST00000166032.8	5692	14	-2	3177	-2	0	multi-exon	FALSE	canonical	1	1	junction_7	17.2732991609977	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATTATCTAAAAACACA	NA	False	NA	NA	False	AATAAA	-7	NA	94320577	94338798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097_94333420_94335161_94335323_94335452_94335626_94335966_94336032_94336346_94336499_94336663_94336766_94337357_94337455_94337866_94337959_94338124
ENSMUSG00000041915.10_0	chr18	+	4660	8	FSM	ENSMUSG00000041915.10	ENSMUST00000115808.4	3385	8	48	-1323	48	1323	multi-exon	FALSE	canonical	3	74	junction_2	12.315578321287	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGACAAAAACTGTCTTC	6969	False	NA	-2	True	AATAAA	-5	NA	31892980	31917119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696
ENSMUSG00000041915.10_2	chr18	+	4548	7	NIC	ENSMUSG00000041915.10	novel	3385	8	NA	NA	54	1328	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	37.8832270126093	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAACTGTCTTCTGCCT	6975	False	NA	3	True	AATAAA	-10	NA	31892986	31917124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_31893248_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696
ENSMUSG00000041915.10_3	chr18	+	4794	9	NIC	ENSMUSG00000041915.10	novel	3385	8	NA	NA	47	1328	combination_of_known_junctions	FALSE	canonical	3	6	junction_7	37.6345502829514	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAACTGTCTTCTGCCT	6968	False	NA	3	True	AATAAA	-10	NA	31892979	31917124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913094_31913223_31913696
ENSMUSG00000041920.15_0	chr11	-	2006	5	ISM	ENSMUSG00000041920.15	ENSMUST00000070872.13	2354	6	9795	-58	2860	58	3prime_fragment	FALSE	canonical	3	27	junction_2	4.96865172858795	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACTACAGGTGAATTATT	8872	False	NA	NA	False	ATTAAA	-17	NA	109354325	109343493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135
ENSMUSG00000041920.15_1	chr11	-	2927	6	FSM	ENSMUSG00000041920.15	ENSMUST00000070872.13	2354	6	310	-883	215	883	multi-exon	FALSE	canonical	3	14	junction_5	8.5463442476886	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTCCAGTGGTTTTTT	3184	False	NA	NA	False	NA	NA	NA	109363810	109342668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109363763
ENSMUSG00000041920.15_2	chr11	-	2778	6	NNC	ENSMUSG00000041920.15	novel	4219	6	NA	NA	-1379	639	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	8.20731381147328	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCACATATTTTTACCTC	1191	False	NA	NA	False	AATAAA	-21	NA	109365803	109342912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109365661
ENSMUSG00000041920.15_6	chr11	-	3065	2	ISM	ENSMUSG00000041920.15	ENSMUST00000070152.12	4219	6	18203	8	10964	-8	3prime_fragment	FALSE	canonical	3	33	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTAAAGAGTCTGATGTT	NA	False	NA	-9	True	AATAAA	-13	NA	109346221	109341688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_109344221_109345688
ENSMUSG00000041921.17_0	chr2	+	1230	10	FSM	ENSMUSG00000041921.17	ENSMUST00000037210.9	1321	10	66	25	-9	-25	multi-exon	FALSE	canonical	3	42	junction_6	11.0565326201412	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71283685	71355510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
ENSMUSG00000041921.17_1	chr2	+	2845	10	NIC	ENSMUSG00000041921.17	novel	2770	9	NA	NA	6	-25	intron_retention	FALSE	canonical	3	4	junction_1	25.5342906696074	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71283682	71355510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_71283743_71331122_71331214_71337128_71337287_71340084_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
ENSMUSG00000041921.17_14	chr2	+	3352	3	NIC	ENSMUSG00000041921.17	novel	2770	9	NA	NA	5449	-25	intron_retention	FALSE	canonical	3	67	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2679	False	NA	NA	False	NA	NA	NA	71351204	71355510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_71354194_71355060_71355140_71355226
ENSMUSG00000041921.17_16	chr2	+	122	1	ISM	ENSMUSG00000041921.17	ENSMUST00000037210.9	1321	10	71785	9	9649	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTCTCAAACCTATTGT	6879	False	NA	NA	False	NA	NA	NA	71355404	71355526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_71355400_71355500
ENSMUSG00000041921.17_2	chr2	+	2691	10	NNC	ENSMUSG00000041921.17	novel	2770	9	NA	NA	6	-26	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	22.0224352495583	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71283682	71355509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_71283743_71337128_71337287_71340084_71340697_71340758_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
ENSMUSG00000041921.17_6	chr2	+	2754	9	FSM	ENSMUSG00000041921.17	ENSMUST00000139045.8	2770	9	-12	28	6	-25	multi-exon	FALSE	canonical	3	42	junction_5	11.7147076361299	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71283682	71355510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_71283743_71337128_71337287_71340084_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
ENSMUSG00000041926.16_0	chr1	-	2238	11	FSM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	44	6	44	-6	multi-exon	FALSE	canonical	3	249	junction_8	16.9602476397015	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGATAAGTTGGAGTTAT	NA	False	NA	-20	True	AATAAA	-16	NA	135211778	135190455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126_135205276_135206504_135206646_135211299
ENSMUSG00000041926.16_24	chr1	-	161	1	FSM	ENSMUSG00000041926.16	ENSMUST00000189615.2	2275	1	2114	0	-383	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAGCAAA	NA	False	NA	NA	False	NA	NA	NA	135205539	135205378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_135205400_135205500
ENSMUSG00000041926.16_9	chr1	-	2137	10	FSM	ENSMUSG00000041926.16	ENSMUST00000074357.8	2171	10	30	4	30	-4	multi-exon	FALSE	canonical	3	54	junction_7	75.0946727574148	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATAAGTTGGAGTTATAG	NA	False	NA	-18	True	AATAAA	-18	NA	135211792	135190453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135205126_135205276_135206504_135206646_135211299
ENSMUSG00000041930.8_0	chr5	+	3509	3	FSM	ENSMUSG00000041930.8	ENSMUST00000043650.8	2930	3	-602	23	-602	-23	multi-exon	FALSE	canonical	3	54	junction_1	5	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAACGGAAAAC	NA	False	NA	-11	True	TTTAAA	-10	NA	114705474	114751258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_114706486_114732401_114732529_114748887
ENSMUSG00000041930.8_7	chr5	+	1714	1	ISM	ENSMUSG00000041930.8	ENSMUST00000043650.8	2930	3	43456	35	43455	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACGAAGAGAAAGAAAA	NA	False	NA	-23	True	NA	NA	NA	114749532	114751246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114749500_114751200
ENSMUSG00000041935.11_1	chr15	-	5066	6	FSM	ENSMUSG00000041935.11	ENSMUST00000046633.10	5076	6	6	4	6	-4	multi-exon	FALSE	canonical	3	175	junction_4	35.1681674245332	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGTTTCTTACTTTC	2186	False	NA	-14	True	AATAAA	-16	NA	4025220	4011520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4025096
ENSMUSG00000041935.11_2	chr15	-	2931	1	ISM	ENSMUSG00000041935.11	ENSMUST00000046633.10	5076	6	10775	4	7109	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGTTTCTTACTTTC	NA	False	NA	-14	True	AATAAA	-16	NA	4014451	4011520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_4011500_4014500
ENSMUSG00000041935.11_3	chr15	-	5546	5	NIC	ENSMUSG00000041935.11	novel	5076	6	NA	NA	10	-13	intron_retention	FALSE	canonical	3	219	junction_2	23.7907545067406	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAACCCCCCTACTTGTTT	2190	False	NA	-23	True	AATAAA	-7	NA	4025216	4011529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021947_4025096
ENSMUSG00000041936.19_10	chr4	-	3910	17	ISM	ENSMUSG00000041936.19	ENSMUST00000105574.9	7193	35	12807	4	636	0	3prime_fragment	FALSE	canonical	3	246	junction_15	71.4762854029223	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAGGGACTGTGTTTGT	NA	False	NA	-25	True	AATAAA	-14	NA	156257551	156249750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253278_156253359_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858_156256075_156256244_156256438_156256531_156256880_156257018_156257139_156257224_156257340_156257459
ENSMUSG00000041936.19_11	chr4	-	2959	12	ISM	ENSMUSG00000041936.19	ENSMUST00000105574.9	7193	35	14366	5	2195	-1	3prime_fragment	FALSE	canonical	3	284	junction_11	61.9022156107571	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATAGGGACTGTGTTTG	NA	False	NA	-26	True	AATAAA	-13	NA	156255992	156249751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253278_156253359_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858
ENSMUSG00000041936.19_24	chr4	-	4191	19	ISM	ENSMUSG00000041936.19	ENSMUST00000105574.9	7193	35	12009	5	-162	-1	3prime_fragment	FALSE	canonical	3	191	junction_18	85.4948016613356	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATAGGGACTGTGTTTG	NA	False	NA	-26	True	AATAAA	-13	NA	156258349	156249751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253278_156253359_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858_156256075_156256244_156256438_156256531_156256880_156257018_156257139_156257224_156257340_156257459_156257588_156257999_156258138_156258241
ENSMUSG00000041936.19_37	chr4	-	3430	14	ISM	ENSMUSG00000041936.19	ENSMUST00000105574.9	7193	35	13632	4	1461	0	3prime_fragment	FALSE	canonical	3	284	junction_11	59.1860970401009	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAGGGACTGTGTTTGT	NA	False	NA	-25	True	AATAAA	-14	NA	156256726	156249750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253278_156253359_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858_156256075_156256244_156256438_156256531
ENSMUSG00000041936.19_4	chr4	-	7375	36	FSM	ENSMUSG00000041936.19	ENSMUST00000180572.2	6891	36	-1	-483	-1	-1	multi-exon	FALSE	canonical	3	186	junction_32	92.1507460631763	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATAGGGACTGTGTTTG	NA	False	NA	-26	True	AATAAA	-13	NA	156281946	156249751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253278_156253359_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858_156256075_156256244_156256438_156256531_156256880_156257018_156257139_156257224_156257340_156257459_156257588_156257999_156258138_156258241_156258548_156258633_156258740_156258812_156258938_156259027_156259172_156259312_156259478_156259556_156259674_156260675_156260782_156260860_156261010_156261090_156261292_156261412_156261608_156261679_156261899_156262885_156263093_156263239_156263465_156263554_156263780_156263849_156264066_156269544_156269593_156279700_156279963_156281670
ENSMUSG00000041936.19_6	chr4	-	3121	13	ISM	ENSMUSG00000041936.19	ENSMUST00000105574.9	7193	35	14035	4	1864	0	3prime_fragment	FALSE	canonical	3	284	junction_11	59.8233510707427	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAGGGACTGTGTTTGT	NA	False	NA	-25	True	AATAAA	-14	NA	156256323	156249750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253278_156253359_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858_156256075_156256244
ENSMUSG00000041936.19_9	chr4	-	891	1	ISM	ENSMUSG00000041936.19	ENSMUST00000154494.8	2071	5	2902	4	2902	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAGGGACTGTGTTTGT	5018	False	NA	-25	True	AATAAA	-14	NA	156250641	156249750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_156249800_156250600
ENSMUSG00000041939.15_2	chr5	+	1669	11	FSM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	-18	9	2	-2	multi-exon	FALSE	canonical	3	102	junction_10	13.5410487038486	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACAAAGCCTTGGGCCC	NA	False	NA	NA	False	AATAAA	-11	NA	114582348	114598643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
ENSMUSG00000041939.15_3	chr5	+	1692	12	NIC	ENSMUSG00000041939.15	novel	1660	11	NA	NA	2	3	combination_of_known_junctions	FALSE	canonical	2	11	junction_2	45.2173812847221	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAGTACAAACAAAGCCT	NA	False	NA	NA	False	AATAAA	-4	NA	114582356	114598636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
ENSMUSG00000041939.15_5	chr5	+	1698	11	FSM	ENSMUSG00000041939.15	ENSMUST00000112239.9	1602	11	6	-102	-2	-5	multi-exon	FALSE	canonical	3	9	junction_3	36.3257484437692	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTACAAACAAAGCCTTGGG	NA	False	NA	NA	False	AATAAA	-8	NA	114582352	114598640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588301_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
ENSMUSG00000041945.13_1	chr1	-	3291	7	FSM	ENSMUSG00000041945.13	ENSMUST00000131390.8	3311	7	21	-1	-3	1	multi-exon	FALSE	canonical	0	0	junction_5	5.1234753829798	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACGTGTGTGTGTGTGTCGT	NA	False	NA	NA	False	ATTAAA	-12	NA	40829826	40811199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_40813707_40820540_40820751_40823536_40823667_40825326_40825371_40826689_40826778_40829430_40829561_40829644
ENSMUSG00000041945.13_2	chr1	-	3166	6	FSM	ENSMUSG00000041945.13	ENSMUST00000039672.6	3160	6	-8	2	-8	1	multi-exon	FALSE	canonical	3	9	junction_2	1.46969384566991	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACGTGTGTGTGTGTGTCGT	NA	False	NA	NA	False	ATTAAA	-12	NA	40829831	40811199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_40813707_40820540_40820751_40823536_40823667_40825326_40825371_40826689_40826778_40829644
ENSMUSG00000041949.7_20	chr8	+	3273	17	ISM	ENSMUSG00000041949.7	ENSMUST00000048359.5	4409	18	5956	576	5878	-576	3prime_fragment	FALSE	canonical	3	69	junction_1	15.1779805557261	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGTCACCGAGCTGGT	7069	False	NA	39	True	AATAAA	-40	NA	107415655	107577495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107415925_107419198_107419316_107422080_107422229_107423235_107423373_107425587_107425751_107426796_107426880_107443240_107443354_107444601_107444779_107447285_107447416_107451725_107451918_107462317_107462453_107468644_107469104_107473925_107473984_107508325_107508467_107533672_107533825_107545087_107545202_107576810
ENSMUSG00000041949.7_5	chr8	+	3814	18	FSM	ENSMUSG00000041949.7	ENSMUST00000048359.5	4409	18	17	578	17	-578	multi-exon	FALSE	canonical	3	69	junction_2	14.9330686662985	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGCTGTCACCGAGCTG	1130	False	NA	37	True	AATAAA	-38	NA	107409716	107577493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_107409888_107415283_107415925_107419198_107419316_107422080_107422229_107423235_107423373_107425587_107425751_107426796_107426880_107443240_107443354_107444601_107444779_107447285_107447416_107451725_107451918_107462317_107462453_107468644_107469104_107473925_107473984_107508325_107508467_107533672_107533825_107545087_107545202_107576810
ENSMUSG00000041957.16_0	chr16	+	2920	13	FSM	ENSMUSG00000041957.16	ENSMUST00000039408.3	2918	13	-9	7	-9	-7	multi-exon	FALSE	canonical	3	76	junction_4	18.1995115929583	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCGCTTTGTCTGTGACC	NA	False	NA	12	True	AATAAA	-12	NA	16031172	16090569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16031460_16043164_16043278_16043583_16044156_16048504_16048641_16058363_16058572_16064729_16064908_16078189_16078308_16079467_16079633_16080428_16080603_16085040_16085195_16086381_16086572_16087548_16087637_16090032
ENSMUSG00000041958.11_0	chr11	+	2442	12	FSM	ENSMUSG00000041958.11	ENSMUST00000048073.9	2501	12	45	14	45	-14	multi-exon	FALSE	canonical	3	513	junction_10	36.2694234084327	902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTTGATATGGATGACCA	NA	False	NA	14	True	NA	NA	NA	78219285	78233594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
ENSMUSG00000041958.11_2	chr11	+	2303	11	NIC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	43	-15	combination_of_known_splicesites	FALSE	canonical	3	77	junction_1	151.766300607216	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGTTGATATGGATGACC	NA	False	NA	13	True	NA	NA	NA	78219283	78233593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_78219335_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
ENSMUSG00000041959.15_0	chr3	+	622	3	FSM	ENSMUSG00000041959.15	ENSMUST00000045756.14	685	3	61	2	-22	-2	multi-exon	TRUE	canonical	3	427	junction_2	41.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTTGACGTAGAGTGTT	NA	False	NA	18	True	AATAAA	-22	NA	93462447	93471948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_93462519_93468250_93468403_93471549
ENSMUSG00000041959.15_2	chr3	+	164	1	ISM	ENSMUSG00000041959.15	ENSMUST00000045756.14	685	3	9391	9	3744	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTCTGAATTTGACGTA	1094	False	NA	11	True	AATAAA	-15	NA	93471777	93471941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_93471800_93471900
ENSMUSG00000041961.15_3	chr11	-	4393	8	NIC	ENSMUSG00000041961.15	novel	6311	9	NA	NA	8	-678	intron_retention	FALSE	canonical	3	35	junction_3	4.75093975666168	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACATCATGTGTCAATAC	6440	False	NA	NA	False	ATTAAA	-4	NA	5394839	5229279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_5232506_5233337_5233441_5236093_5236262_5237372_5237484_5239025_5239158_5239662_5239738_5288637_5288764_5394387
ENSMUSG00000041961.15_5	chr11	-	3291	9	FSM	ENSMUSG00000041961.15	ENSMUST00000109867.8	6311	9	11	3009	11	-731	multi-exon	FALSE	canonical	3	15	junction_1	9.67923034130297	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCTAACTACCAACTTCT	6443	False	NA	NA	False	AATATA	-11	NA	5394836	5229332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5229762_5230807_5232506_5233337_5233441_5236093_5236262_5237372_5237484_5239025_5239158_5239662_5239738_5288637_5288764_5394387
ENSMUSG00000041961.15_6	chr11	-	2250	1	NIC	ENSMUSG00000041961.15	novel	6311	9	NA	NA	100224	-665	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATACTGTTGTCTCCCTG	NA	False	NA	NA	False	ATTAAA	-17	NA	5231516	5229266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_5229300_5231500
ENSMUSG00000041966.19_0	chr2	+	2465	14	FSM	ENSMUSG00000041966.19	ENSMUST00000154704.8	7739	14	40	5234	0	346	multi-exon	FALSE	canonical	3	168	junction_11	23.2697075602773	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTTCAATTCATCAGTT	NA	False	NA	17	True	NA	NA	NA	70886127	70920968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
ENSMUSG00000041966.19_1	chr2	+	1897	15	FSM	ENSMUSG00000041966.19	ENSMUST00000064141.12	1905	15	3	5	0	-5	multi-exon	FALSE	canonical	3	15	junction_14	54.6553207074357	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCAAGTGGCTTTATGAC	NA	False	NA	7	True	AATAAA	-16	NA	70886127	70929481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70929358
ENSMUSG00000041966.19_36	chr2	+	569	1	ISM	ENSMUSG00000041966.19	ENSMUST00000154704.8	7739	14	34320	5226	14722	354	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCATCAGTTCTTATGCG	NA	False	NA	25	True	NA	NA	NA	70920407	70920976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_70920400_70921000
ENSMUSG00000041966.19_38	chr2	+	1288	1	ISM	ENSMUSG00000041966.19	ENSMUST00000154704.8	7739	14	37366	1461	17768	-1461	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCATGGTTGTCCACCAT	NA	False	NA	NA	False	NA	NA	NA	70923453	70924741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_70923500_70924700
ENSMUSG00000041966.19_4	chr2	+	2264	14	NIC	ENSMUSG00000041966.19	novel	7739	14	NA	NA	6	314	combination_of_known_junctions	TRUE	canonical	3	27	junction_1	53.8095479968128	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	-15	True	NA	NA	NA	70886093	70920936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_70886261_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
ENSMUSG00000041966.19_5	chr2	+	1959	15	NNC	ENSMUSG00000041966.19	novel	1905	15	NA	NA	3	-1473	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_14	52.7831528471898	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGATATTCCATG	NA	False	NA	NA	False	NA	NA	NA	70886130	70924729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70924541
ENSMUSG00000041974.11_0	chr16	-	3229	20	FSM	ENSMUSG00000041974.11	ENSMUST00000040248.9	3282	20	49	4	2	-4	multi-exon	FALSE	canonical	3	251	junction_3	29.6569490345649	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACACTTTGTGGTTTTAG	1996	False	NA	-4	True	AATAAA	-14	NA	15964666	15707091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
ENSMUSG00000041974.11_7	chr16	-	3233	20	NNC	ENSMUSG00000041974.11	novel	3282	20	NA	NA	-7	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	72.9533680224373	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTAAACACTTTGTGGTT	1987	False	NA	-8	True	AATAAA	-10	NA	15964675	15707095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871130_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
ENSMUSG00000041975.18_0	chr2	-	2340	10	FSM	ENSMUSG00000041975.18	ENSMUST00000112186.9	2347	10	3	4	3	-4	multi-exon	FALSE	canonical	3	72	junction_7	14.8332292963476	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGCTTTTGTTGGAG	NA	False	NA	-4	True	NA	NA	NA	70885924	70794908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812540_70823827_70823920_70848563_70848719_70885714
ENSMUSG00000041975.18_1	chr2	-	2111	10	NIC	ENSMUSG00000041975.18	novel	2347	10	NA	NA	4	-4	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	29.4505234814822	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGCTTTTGTTGGAG	NA	False	NA	-4	True	NA	NA	NA	70885923	70794908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812312_70823827_70823920_70848563_70848719_70885714
ENSMUSG00000041977.19_0	chr3	+	6635	39	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	-3	-7	combination_of_known_junctions	FALSE	canonical	3	40	junction_18	18.0509627892179	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTCTTCCATTGTGGT	6182	False	NA	4	True	AAGAAA	-5	NA	87524895	87645333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624730_87624828_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87641730_87641860_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_10	chr3	+	6639	39	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	3	35	junction_36	20.6390460440072	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTGTGGTTGTATG	6175	False	NA	10	True	AAGAAA	-11	NA	87524888	87645339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87602704_87602825_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624730_87624828_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_11	chr3	+	6461	38	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	-1	-67	combination_of_known_splicesites	FALSE	canonical	3	35	junction_35	19.4597597574427	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATGTATACTCTTAT	6167	False	NA	-56	True	NA	NA	NA	87524880	87645273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624730_87624828_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_14	chr3	+	6668	40	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	3	-5	combination_of_known_junctions	FALSE	canonical	3	35	junction_20	20.0595759618992	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCTTCCATTGTGGTTG	6181	False	NA	6	True	AAGAAA	-7	NA	87524894	87645335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624730_87624828_87625535_87625566_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87641730_87641860_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_15	chr3	+	6597	39	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	14	-22	combination_of_known_splicesites	FALSE	canonical	3	35	junction_36	20.1765064553401	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAGAAAAGTTAAATA	6199	False	NA	-11	True	NA	NA	NA	87524912	87645318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87602704_87602825_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624727_87624828_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_16	chr3	+	6451	39	NIC	ENSMUSG00000041977.19	novel	5603	39	NA	NA	-2	-101	combination_of_known_splicesites	FALSE	canonical	3	35	junction_20	20.8896487242537	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATAGATATGGAAATG	6176	False	NA	-90	True	NA	NA	NA	87524889	87645239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624727_87624828_87625535_87625566_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_18	chr3	+	6516	38	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_35	18.9389469278987	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCATTGTGGTTGTATGAT	6183	False	NA	12	True	AAGAAA	-13	NA	87524896	87645341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624727_87624828_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_4	chr3	+	6793	41	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	-1	-14	combination_of_known_junctions	FALSE	canonical	3	35	junction_21	21.0653744329409	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTTAAATATTCTTCCA	6167	False	NA	-3	True	TTTAAA	-2	NA	87524880	87645326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87602704_87602825_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624730_87624828_87625535_87625566_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87641730_87641860_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_5	chr3	+	6629	39	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	3	-17	combination_of_known_junctions	FALSE	canonical	3	45	junction_7	17.5002967921014	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGTTAAATATTCTT	6181	False	NA	-6	True	NA	NA	NA	87524894	87645323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624727_87624828_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87641730_87641860_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_6	chr3	+	6681	40	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	-4	-3	combination_of_known_splicesites	TRUE	canonical	3	35	junction_21	21.8596322932791	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTCCATTGTGGTTGTA	6164	False	NA	8	True	AAGAAA	-9	NA	87524877	87645337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87602704_87602825_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624727_87624828_87625535_87625566_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_7	chr3	+	6668	40	NIC	ENSMUSG00000041977.19	novel	5603	39	NA	NA	-3	-7	combination_of_known_junctions	FALSE	canonical	3	35	junction_20	19.5967231491748	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTCTTCCATTGTGGT	6182	False	NA	4	True	AAGAAA	-5	NA	87524895	87645333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624727_87624828_87625535_87625566_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87641730_87641860_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_8	chr3	+	6765	40	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	-3	-7	combination_of_known_junctions	FALSE	canonical	3	40	junction_7	18.8502175978037	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTCTTCCATTGTGGT	6175	False	NA	4	True	AAGAAA	-5	NA	87524888	87645333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87602704_87602825_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624727_87624828_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87641730_87641860_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041977.19_9	chr3	+	6767	40	FSM	ENSMUSG00000041977.19	ENSMUST00000039476.15	6776	40	2	7	2	-7	multi-exon	FALSE	canonical	3	40	junction_7	19.3349315805408	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTCTTCCATTGTGGT	6170	False	NA	4	True	AAGAAA	-5	NA	87524883	87645333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87526100_87590792_87590885_87591774_87591874_87593305_87593356_87594221_87594280_87595120_87595300_87596085_87596158_87602704_87602825_87604651_87604698_87605294_87605372_87606071_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624730_87624828_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87641730_87641860_87642651_87642879_87643112_87643303_87644350
ENSMUSG00000041992.10_0	chr12	+	3920	26	NIC	ENSMUSG00000041992.10	novel	2677	18	NA	NA	5	507	combination_of_known_junctions	FALSE	canonical	3	19	junction_15	5.78632871516992	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGATCTAGATACTAGTTC	NA	False	NA	NA	False	TTTAAA	-25	NA	117497512	117720971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_117497854_117539174_117539226_117541240_117541348_117545313_117545436_117547662_117547832_117558860_117558928_117577000_117577050_117610663_117610738_117621897_117622024_117652298_117652418_117652882_117652972_117673003_117673083_117677839_117677985_117679041_117679140_117681936_117681968_117682853_117682933_117684976_117685127_117689685_117689784_117692391_117692515_117694274_117694454_117703361_117703453_117706585_117706637_117707907_117707996_117712120_117712186_117717156_117717212_117719697
ENSMUSG00000041992.10_10	chr12	+	1685	1	ISM	ENSMUSG00000041992.10	ENSMUST00000109691.4	6746	28	241682	7	17451	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATACCGCTCCTGCCTA	NA	False	NA	NA	False	AATATA	-11	NA	117721780	117723465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_117721800_117723500
ENSMUSG00000041992.10_16	chr12	+	2904	23	ISM	ENSMUSG00000041992.10	ENSMUST00000109691.4	6746	28	65226	3007	-13536	1	3prime_fragment	FALSE	canonical	3	19	junction_12	5.89017952833639	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGTCTTTACATATA	NA	False	NA	NA	False	NA	NA	NA	117545324	117720465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_117545436_117547662_117547832_117558860_117558928_117577000_117577050_117610663_117610738_117621897_117622024_117652298_117652418_117652882_117652972_117673003_117673083_117677839_117677985_117679041_117679140_117681936_117681968_117682853_117682933_117684976_117685127_117689685_117689784_117692391_117692515_117694274_117694454_117703361_117703453_117706585_117706637_117707907_117707996_117712120_117712186_117717156_117717212_117719697
ENSMUSG00000041992.10_17	chr12	+	2610	16	FSM	ENSMUSG00000041992.10	ENSMUST00000222185.2	5508	16	-109	3007	-109	1	multi-exon	FALSE	canonical	3	19	junction_5	5.66235129802295	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGTCTTTACATATA	NA	False	NA	NA	False	NA	NA	NA	117652461	117720465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_117652972_117673003_117673083_117677839_117677985_117679041_117679140_117681936_117681968_117682853_117682933_117684976_117685127_117689685_117689784_117692391_117692515_117694274_117694454_117703361_117703453_117706585_117706637_117707907_117707996_117712120_117712186_117717156_117717212_117719697
ENSMUSG00000041992.10_3	chr12	+	3335	5	ISM	ENSMUSG00000041992.10	ENSMUST00000220781.2	1078	9	11	71608	11	-23480	5prime_fragment	FALSE	canonical	3	20	junction_4	5.21416340365355	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGAATGTTGTCCAC	NA	False	NA	NA	False	AATAAA	-17	NA	117497518	117550382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_117497854_117539174_117539226_117541240_117541348_117545313_117545436_117547662
ENSMUSG00000041995.9_0	chr13	+	1951	2	FSM	ENSMUSG00000041995.9	ENSMUST00000221807.2	1945	2	-6	0	-6	0	multi-exon	FALSE	canonical	3	15	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGTGTTCTGCTTGCATG	NA	False	NA	38	True	NA	NA	NA	95460113	95474349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_95460279_95472563
ENSMUSG00000041995.9_1	chr13	+	1960	2	FSM	ENSMUSG00000041995.9	ENSMUST00000045909.8	1894	2	-66	0	-66	0	multi-exon	FALSE	canonical	3	65	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGTGTTCTGCTTGCATG	NA	False	NA	38	True	NA	NA	NA	95461678	95474349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_95461853_95472563
ENSMUSG00000041995.9_4	chr13	+	1259	1	ISM	ENSMUSG00000041995.9	ENSMUST00000221807.2	1945	2	12971	0	9816	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGTGTTCTGCTTGCATG	NA	False	NA	38	True	NA	NA	NA	95473090	95474349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_95473100_95474300
ENSMUSG00000041997.17_0	chr2	-	4273	20	FSM	ENSMUSG00000041997.17	ENSMUST00000038584.9	4280	20	-4	11	-4	-11	multi-exon	TRUE	canonical	3	163	junction_17	29.5425886295749	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATGTAAAGACTGTGAA	NA	False	NA	NA	False	AATAAA	-11	NA	70656076	70542761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_70544510_70546955_70547064_70548125_70548238_70551417_70551554_70551901_70552072_70552250_70552433_70554345_70554428_70555823_70555922_70568764_70568832_70572397_70572587_70575846_70575984_70576277_70576389_70579578_70579672_70580778_70580869_70582578_70582675_70584783_70584831_70587817_70587894_70600347_70600420_70617220_70617340_70655536
ENSMUSG00000041997.17_11	chr2	-	4167	19	NIC	ENSMUSG00000041997.17	novel	4280	20	NA	NA	-6	-11	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	60.4301709045701	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATGTAAAGACTGTGAA	NA	False	NA	NA	False	AATAAA	-11	NA	70656078	70542761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_70544510_70548125_70548238_70551417_70551554_70551901_70552072_70552250_70552433_70554345_70554428_70555823_70555922_70568764_70568832_70572397_70572587_70575846_70575984_70576277_70576389_70579578_70579672_70580778_70580869_70582578_70582675_70584783_70584831_70587817_70587894_70600347_70600420_70617220_70617340_70655536
ENSMUSG00000041997.17_3	chr2	-	4353	21	NIC	ENSMUSG00000041997.17	novel	4271	22	NA	NA	-15	-11	combination_of_known_junctions	FALSE	canonical	3	27	junction_18	66.7850844126142	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATGTAAAGACTGTGAA	NA	False	NA	NA	False	AATAAA	-11	NA	70656087	70542761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_70544510_70546955_70547064_70548125_70548238_70551417_70551554_70551901_70552072_70552250_70552433_70554345_70554428_70555823_70555922_70568764_70568832_70572397_70572587_70575846_70575984_70576277_70576389_70579578_70579672_70580778_70580869_70582578_70582675_70584783_70584831_70587817_70587894_70599205_70599275_70600347_70600420_70617220_70617340_70655536
ENSMUSG00000042002.12_0	chr5	-	3027	10	FSM	ENSMUSG00000042002.12	ENSMUST00000044790.12	3016	10	-12	1	-12	-1	multi-exon	FALSE	canonical	2	4	junction_3	3.91893157523298	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGTGACTCAGTGTGG	NA	False	NA	-3	True	AATAAA	-12	NA	114411880	114392225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114393812_114394619_114395013_114396568_114396777_114397810_114397908_114398410_114398539_114398926_114399047_114399135_114399264_114401069_114401216_114411033_114411123_114411748
ENSMUSG00000042010.17_13	chr5	+	4013	20	ISM	ENSMUSG00000042010.17	ENSMUST00000143276.2	6680	41	26949	6	-21605	-2	3prime_fragment	FALSE	canonical	3	23	junction_1	16.6049086624935	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGAAGCTTCTGGCCTT	7944	False	NA	1	True	AATAAA	-11	NA	114364788	114388814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114364954_114366591_114366748_114367791_114367996_114368775_114368932_114370907_114371031_114371143_114371414_114373513_114373612_114374567_114374689_114376678_114376790_114377752_114377897_114378604_114378726_114379983_114380081_114382546_114382644_114383148_114383285_114383938_114384117_114384491_114384605_114386224_114386380_114386644_114386816_114386935_114387073_114387554
ENSMUSG00000042010.17_14	chr5	+	3133	15	ISM	ENSMUSG00000042010.17	ENSMUST00000143276.2	6680	41	33382	4	-15172	0	3prime_fragment	FALSE	canonical	3	28	junction_6	17.5518183254788	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAAGCTTCTGGCCTTGA	NA	False	NA	3	True	AATAAA	-13	NA	114371221	114388816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114371414_114373513_114373612_114374567_114374689_114376678_114376790_114377752_114377897_114378604_114378726_114379983_114380081_114382546_114382644_114383148_114383285_114383938_114384117_114384491_114384605_114386224_114386380_114386644_114386816_114386935_114387073_114387554
ENSMUSG00000042010.17_20	chr5	+	2116	7	ISM	ENSMUSG00000042010.17	ENSMUST00000143276.2	6680	41	45349	0	-3205	0	3prime_fragment	FALSE	canonical	3	39	junction_3	17.2956320754371	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTCTGGCCTTGATTTA	2355	False	NA	7	True	AATAAA	-17	NA	114383188	114388820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114383285_114383938_114384117_114384491_114384605_114386224_114386380_114386644_114386816_114386935_114387073_114387554
ENSMUSG00000042010.17_21	chr5	+	967	1	ISM	ENSMUSG00000042010.17	ENSMUST00000102582.8	8788	53	103254	6	1456	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAAGCTTCTGGCCTTGA	7016	False	NA	3	True	AATAAA	-13	NA	114387849	114388816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114387800_114388800
ENSMUSG00000042010.17_22	chr5	+	1611	4	ISM	ENSMUSG00000042010.17	ENSMUST00000143276.2	6680	41	48499	4	-55	0	3prime_fragment	FALSE	canonical	3	58	junction_1	12.0369800568452	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAAGCTTCTGGCCTTGA	5505	False	NA	3	True	AATAAA	-13	NA	114386338	114388816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114386380_114386644_114386816_114386935_114387073_114387554
ENSMUSG00000042010.17_23	chr5	+	1980	2	NIC	ENSMUSG00000042010.17	novel	6680	41	NA	NA	-40	-1	intron_retention	FALSE	canonical	3	86	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGAAGCTTCTGGCCTTG	5520	False	NA	2	True	AATAAA	-12	NA	114386353	114388815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_114387073_114387554
ENSMUSG00000042010.17_24	chr5	+	1873	3	NIC	ENSMUSG00000042010.17	novel	8482	52	NA	NA	-52	0	intron_retention	FALSE	canonical	3	80	junction_1	3	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAAGCTTCTGGCCTTGA	5508	False	NA	3	True	AATAAA	-13	NA	114386341	114388816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_114386816_114386935_114387073_114387554
ENSMUSG00000042010.17_46	chr5	+	3542	18	ISM	ENSMUSG00000042010.17	ENSMUST00000143276.2	6680	41	30103	5	-18451	-1	3prime_fragment	FALSE	canonical	3	28	junction_1	16.9287127354354	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGAAGCTTCTGGCCTTG	NA	False	NA	2	True	AATAAA	-12	NA	114367942	114388815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114367996_114368775_114368932_114370907_114371031_114371143_114371414_114373513_114373612_114374567_114374689_114376678_114376790_114377752_114377897_114378604_114378726_114379983_114380081_114382546_114382644_114383148_114383285_114383938_114384117_114384491_114384605_114386224_114386380_114386644_114386816_114386935_114387073_114387554
ENSMUSG00000042010.17_5	chr5	+	8121	52	NIC	ENSMUSG00000042010.17	novel	676	5	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	13.4690326470011	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAAGCTTCTGGCCTTGA	NA	False	NA	3	True	AATAAA	-13	NA	114313989	114388816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_114314252_114322110_114322244_114326391_114326531_114328136_114328247_114328390_114328473_114329215_114329315_114329912_114330023_114330134_114330246_114333284_114333495_114333695_114333867_114334720_114334883_114336237_114336402_114338300_114338452_114338556_114338661_114339959_114340042_114341450_114341597_114342732_114342884_114345296_114345432_114347813_114347961_114348965_114349155_114350711_114350813_114351372_114351462_114351673_114351799_114354661_114354776_114354871_114354986_114355709_114355800_114356922_114357042_114361292_114361431_114361868_114361969_114362049_114362158_114363634_114363692_114363914_114363957_114364737_114364954_114366591_114366748_114367791_114367996_114368775_114368932_114370907_114371031_114371143_114371414_114373513_114373612_114374567_114374689_114376678_114376790_114377752_114377897_114378604_114378726_114379983_114380081_114382546_114382644_114383148_114383285_114383938_114384117_114384491_114384605_114386224_114386380_114386644_114386816_114386935_114387073_114387554
ENSMUSG00000042010.17_7	chr5	+	7634	49	ISM	ENSMUSG00000042010.17	ENSMUST00000031583.15	8482	52	24509	2	-9752	-2	3prime_fragment	FALSE	canonical	3	18	junction_9	13.1770627470195	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGAAGCTTCTGGCCTT	4735	False	NA	1	True	AATAAA	-11	NA	114328087	114388814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_114328247_114328390_114328473_114329215_114329315_114329912_114330023_114330134_114330246_114333284_114333495_114333695_114333867_114334720_114334883_114336237_114336402_114338300_114338452_114338556_114338661_114339959_114340042_114341450_114341597_114342732_114342884_114345296_114345432_114347813_114347961_114348965_114349155_114350711_114350813_114351372_114351462_114351673_114351799_114354661_114354776_114354871_114354986_114355709_114355800_114356922_114357042_114361292_114361431_114361868_114361969_114362049_114362158_114363634_114363692_114363914_114363957_114364737_114364954_114366591_114366748_114367791_114367996_114368775_114368932_114370907_114371031_114371143_114371414_114373513_114373612_114374567_114374689_114376678_114376790_114377752_114377897_114378604_114378726_114379983_114380081_114382546_114382644_114383148_114383285_114383938_114384117_114384491_114384605_114386224_114386380_114386644_114386816_114386935_114387073_114387554
ENSMUSG00000042015.18_2	chr13	+	3019	13	NIC	ENSMUSG00000042015.18	novel	3062	14	NA	NA	31	-9	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	18.8981186600383	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTCATAGTTTGTGGGT	NA	False	NA	6	True	AATATA	-7	NA	95112886	95159812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_95113098_95114977_95115094_95131757_95131807_95133563_95133694_95136374_95136437_95142238_95142351_95145315_95145379_95146792_95146904_95151538_95151724_95153834_95153957_95154624_95154714_95155339_95155474_95158177
ENSMUSG00000042029.8_1	chr12	+	6612	29	FSM	ENSMUSG00000042029.8	ENSMUST00000084828.5	4684	29	-15	-1913	-15	-207	multi-exon	FALSE	canonical	3	123	junction_1	40.0130559050061	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCTAACTGAGTGCCAAG	NA	False	NA	8	True	AATAAA	-13	NA	116369006	116427144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_116369082_116369321_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
ENSMUSG00000042029.8_2	chr12	+	6799	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	3	-210	intron_retention	FALSE	canonical	3	183	junction_1	32.2243081487453	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATCCTAACTGAGTGCC	NA	False	NA	5	True	AATAAA	-10	NA	116369056	116427141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
ENSMUSG00000042029.8_3	chr12	+	6415	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	3	-210	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	42.7865791811485	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATCCTAACTGAGTGCC	NA	False	NA	5	True	AATAAA	-10	NA	116369024	116427141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_116369082_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
ENSMUSG00000042029.8_4	chr12	+	6593	29	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-1	-210	combination_of_known_splicesites	FALSE	canonical	3	24	junction_1	53.2768089073186	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATCCTAACTGAGTGCC	NA	False	NA	5	True	AATAAA	-10	NA	116369052	116427141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_116369112_116369321_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
ENSMUSG00000042029.8_6	chr12	+	6418	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-2	-210	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	49.3771077062245	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATCCTAACTGAGTGCC	NA	False	NA	5	True	AATAAA	-10	NA	116369051	116427141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_116369112_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
ENSMUSG00000042029.8_75	chr12	+	2134	1	ISM	ENSMUSG00000042029.8	ENSMUST00000222761.2	3355	2	9216	202	9216	-202	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTGAGTGCCAAGAATAA	NA	False	NA	13	True	AATAAA	-18	NA	116425015	116427149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_116425000_116427100
ENSMUSG00000042032.14_0	chr11	-	1787	7	FSM	ENSMUSG00000042032.14	ENSMUST00000101347.10	2053	7	263	3	47	-3	multi-exon	FALSE	canonical	3	348	junction_6	83.011378068846	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACACTTTGGCTTTATTTT	NA	False	NA	-15	True	AATAAA	-15	NA	40585767	40570143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40585629
ENSMUSG00000042032.14_1	chr11	-	1807	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	139	3	-7	-3	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACACTTTGGCTTTATTTT	NA	False	NA	-15	True	AATAAA	-15	NA	40583462	40570143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
ENSMUSG00000042035.12_1	chr3	+	7343	11	FSM	ENSMUSG00000042035.12	ENSMUST00000043983.11	7371	11	1	27	1	-27	multi-exon	FALSE	canonical	2	14	junction_5	19.1627242322171	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGATAAAAAAAAACTTT	253	False	NA	-13	True	NA	NA	NA	101284399	101370348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_101284519_101285121_101285809_101332766_101333145_101334345_101334757_101338519_101338910_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
ENSMUSG00000042035.12_12	chr3	+	3648	8	ISM	ENSMUSG00000042035.12	ENSMUST00000195164.2	3876	11	52917	-767	52917	767	3prime_fragment	FALSE	canonical	3	13	junction_1	7.95907901553378	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCTGAGGGTTGCCCTG	NA	False	NA	NA	False	NA	NA	NA	101338570	101368239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_101338910_101340230_101340291_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
ENSMUSG00000042035.12_15	chr3	+	4779	5	ISM	ENSMUSG00000042035.12	ENSMUST00000043983.11	7371	11	62476	20	61221	-20	3prime_fragment	FALSE	canonical	3	26	junction_2	5.24404424085076	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAACTTTCTCAAGA	NA	False	NA	-6	True	NA	NA	NA	101346874	101370355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
ENSMUSG00000042035.12_16	chr3	+	3903	3	ISM	ENSMUSG00000042035.12	ENSMUST00000043983.11	7371	11	78066	220	76811	-220	3prime_fragment	FALSE	canonical	3	29	junction_2	2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACGCTGTTTACATTTTC	NA	False	NA	3	True	AGTAAA	-11	NA	101362464	101370155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_101362829_101364938_101365425_101367102
ENSMUSG00000042035.12_17	chr3	+	3555	2	ISM	ENSMUSG00000042035.12	ENSMUST00000043983.11	7371	11	80740	4	79485	-4	3prime_fragment	FALSE	canonical	3	29	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACACTTTTGCCACATGC	NA	False	NA	10	True	NA	NA	NA	101365138	101370371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_101365425_101367102
ENSMUSG00000042035.12_18	chr3	+	2083	1	ISM	ENSMUSG00000042035.12	ENSMUST00000043983.11	7371	11	83890	4	82635	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACACTTTTGCCACATGC	NA	False	NA	10	True	NA	NA	NA	101368288	101370371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_101368300_101370400
ENSMUSG00000042035.12_2	chr3	+	7196	12	NIC	ENSMUSG00000042035.12	novel	7371	11	NA	NA	13	-222	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	19.1665169475527	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACGCTGTTTACATTT	265	False	NA	1	True	AGTAAA	-9	NA	101284411	101370153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_101284519_101285121_101285809_101332766_101333145_101334345_101334757_101338519_101338910_101340230_101340291_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
ENSMUSG00000042035.12_21	chr3	+	5007	11	NIC	ENSMUSG00000042035.12	novel	7371	11	NA	NA	17	-1182	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	19.8315405352181	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTAAACTGTGTGCTGC	269	False	NA	NA	False	NA	NA	NA	101284415	101366290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_101284519_101285121_101285809_101332766_101333145_101334345_101334757_101338519_101338910_101340230_101340291_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938
ENSMUSG00000042035.12_24	chr3	+	4208	4	ISM	ENSMUSG00000042035.12	ENSMUST00000043983.11	7371	11	74167	4	72912	-4	3prime_fragment	FALSE	canonical	3	26	junction_1	2.86744175568088	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACACTTTTGCCACATGC	NA	False	NA	10	True	NA	NA	NA	101358565	101370371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_101358611_101362420_101362829_101364938_101365425_101367102
ENSMUSG00000042035.12_4	chr3	+	1856	2	FSM	ENSMUSG00000042035.12	ENSMUST00000198995.5	1855	2	-5	4	-5	-4	multi-exon	FALSE	canonical	3	79	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCCTAAAAAAGAAAAAAAA	247	False	NA	NA	False	NA	NA	NA	101284393	101286852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_101284519_101285121
ENSMUSG00000042042.15_0	chr6	-	3622	8	FSM	ENSMUSG00000042042.15	ENSMUST00000049344.15	3661	8	29	10	29	-10	multi-exon	FALSE	canonical	3	37	junction_1	9.61291648072041	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCTAAATGAAAATGTG	NA	False	NA	NA	False	AATAAA	-14	NA	118116072	118084422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_118086356_118091326_118091409_118096570_118096666_118097905_118098085_118101272_118101375_118103082_118103300_118105655_118106581_118115983
ENSMUSG00000042042.15_12	chr6	-	2957	7	ISM	ENSMUSG00000042042.15	ENSMUST00000049344.15	3661	8	10097	10	577	-10	3prime_fragment	FALSE	canonical	3	37	junction_1	10.2902326936221	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCTAAATGAAAATGTG	NA	False	NA	NA	False	AATAAA	-14	NA	118106004	118084422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_118086356_118091326_118091409_118096570_118096666_118097905_118098085_118101272_118101375_118103082_118103300_118105655
ENSMUSG00000042042.15_5	chr6	-	1507	1	ISM	ENSMUSG00000042042.15	ENSMUST00000125531.2	5252	6	20652	10	17438	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCTAAATGAAAATGTG	NA	False	NA	NA	False	AATAAA	-14	NA	118085929	118084422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_118084400_118085900
ENSMUSG00000042042.15_7	chr6	-	3524	8	NNC	ENSMUSG00000042042.15	novel	3661	8	NA	NA	25	-3	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_3	17.0700836290289	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGAAAATGTGGTAAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	118116076	118084415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_118086356_118091326_118091409_118096570_118096666_118098014_118098085_118101272_118101375_118103082_118103300_118105655_118106581_118115983
ENSMUSG00000042043.7_0	chr13	+	522	4	FSM	ENSMUSG00000042043.7	ENSMUST00000046644.7	559	4	12	25	12	-1	multi-exon	FALSE	canonical	3	1242	junction_3	49.6185449202211	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAATTGTTTGTTTTAT	NA	False	NA	12	True	AATAAA	-12	NA	94925429	94979405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_94925511_94968867_94968974_94973615_94973703_94979157
ENSMUSG00000042043.7_2	chr13	+	437	3	ISM	ENSMUSG00000042043.7	ENSMUST00000220825.2	497	4	14630	3	-4619	-1	3prime_fragment	FALSE	canonical	3	1242	junction_2	58.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAATTGTTTGTTTTAT	NA	False	NA	12	True	AATAAA	-12	NA	94968871	94979405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_94968974_94973615_94973703_94979157
ENSMUSG00000042046.16_0	chr1	+	6030	13	FSM	ENSMUSG00000042046.16	ENSMUST00000045110.14	6282	13	4	248	4	-248	multi-exon	TRUE	canonical	3	42	junction_10	4.74561200830128	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTACTCGACACCAAT	2929	False	NA	NA	False	AATAAA	-12	NA	132345296	132394448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_132345609_132361836_132362226_132377049_132377714_132380824_132381058_132381798_132381883_132382969_132383147_132383597_132383728_132384062_132384220_132384606_132384740_132386054_132386169_132387613_132387729_132390650_132390786_132391061
ENSMUSG00000042046.16_11	chr1	+	2489	1	ISM	ENSMUSG00000042046.16	ENSMUST00000045110.14	6282	13	46679	236	1825	-236	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAATTTTAGCCGCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	132391971	132394460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_132392000_132394500
ENSMUSG00000042050.9_0	chr12	-	3157	22	NNC	ENSMUSG00000042050.9	novel	3721	22	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	7.30607177676597	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGGAAACAGTGAACATTT	NA	False	NA	NA	False	AATAAA	-12	NA	116226606	116171069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_116171404_116175344_116175569_116176993_116177126_116177301_116177402_116180100_116180162_116181723_116181776_116182236_116182299_116182400_116182515_116188506_116188670_116189584_116189758_116193200_116193331_116195308_116195398_116196214_116196327_116196936_116197067_116205298_116205402_116209624_116209842_116210319_116210398_116211614_116211924_116218024_116218117_116219579_116219872_116221040_116221095_116226470
ENSMUSG00000042050.9_1	chr12	-	3290	22	FSM	ENSMUSG00000042050.9	ENSMUST00000039349.8	3721	22	37	394	1	1	multi-exon	FALSE	canonical	3	13	junction_13	5.74791690552625	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTGAACATTTTAGTG	NA	False	NA	NA	False	AATAAA	-17	NA	116226605	116171064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_116171404_116175344_116175569_116176993_116177126_116177301_116177402_116180100_116180162_116181723_116181776_116182236_116182299_116182400_116182515_116188506_116188670_116189584_116189758_116193200_116193331_116195308_116195398_116196214_116196327_116196936_116197067_116205298_116205402_116209624_116209842_116210319_116210398_116211614_116211924_116218024_116218117_116219450_116219872_116221040_116221095_116226470
ENSMUSG00000042050.9_11	chr12	-	1496	9	NIC	ENSMUSG00000042050.9	novel	3256	8	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	7.20134536041704	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTCTTAGATTAATGTA	NA	False	NA	NA	False	AATAAA	-15	NA	116226603	116201590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_116201680_116205298_116205402_116209624_116209842_116210319_116210398_116211614_116211924_116218024_116218117_116219450_116219872_116221040_116221095_116226470
ENSMUSG00000042050.9_15	chr12	-	1845	5	ISM	ENSMUSG00000042050.9	ENSMUST00000222764.2	1747	12	14756	-390	-2936	-5	3prime_fragment	FALSE	canonical	3	16	junction_4	7.29297607290741	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGGAATAATAGGGGCT	NA	False	NA	NA	False	AGTAAA	-12	NA	116180761	116170675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_116171404_116175344_116175569_116176993_116177126_116177301_116177402_116180100
ENSMUSG00000042050.9_7	chr12	-	2712	20	ISM	ENSMUSG00000042050.9	ENSMUST00000039349.8	3721	22	7159	395	7111	0	3prime_fragment	FALSE	canonical	3	13	junction_13	6.02165988840572	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACAGTGAACATTTTAGT	NA	False	NA	NA	False	AATAAA	-16	NA	116219483	116171065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_116171404_116175344_116175569_116176993_116177126_116177301_116177402_116180100_116180162_116181723_116181776_116182236_116182299_116182400_116182515_116188506_116188670_116189584_116189758_116193200_116193331_116195308_116195398_116196214_116196327_116196936_116197067_116205298_116205402_116209624_116209842_116210319_116210398_116211614_116211924_116218024_116218117_116219450
ENSMUSG00000042055.14_0	chr7	+	4480	29	FSM	ENSMUSG00000042055.14	ENSMUST00000084519.7	4550	29	66	4	11	0	multi-exon	FALSE	canonical	3	124	junction_20	18.5519128228804	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTTGTTGTTTGAGTC	NA	False	NA	2	True	AATAAA	-15	NA	129193652	129237458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160_129202335_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226082_129226428_129226544_129226879_129227052_129229728_129229838_129230717_129230781_129231641_129231708_129232343_129232522_129232897_129232994_129233431_129233598_129234047_129234146_129234433_129234580_129235373_129235454_129236541
ENSMUSG00000042063.12_1	chr12	+	1916	3	FSM	ENSMUSG00000042063.12	ENSMUST00000073551.6	1958	3	40	2	0	-2	multi-exon	FALSE	canonical	3	41	junction_2	2	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAACTTGTGTAATGTC	NA	False	NA	15	True	NA	NA	NA	116011383	116024210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_116011487_116018341_116018469_116022524
ENSMUSG00000042063.12_7	chr12	+	3160	1	Genic_Genomic	ENSMUSG00000042063.12	novel	NA	NA	NA	NA	12555	183	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCCAGAAAGAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116024003	116027163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_116024000_116027200
ENSMUSG00000042063.12_8	chr12	+	4790	3	FSM	ENSMUSG00000042063.12	ENSMUST00000183125.2	4779	3	-14	3	-2	-3	multi-exon	FALSE	canonical	0	0	junction_2	22.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTCCTGGTGATGTTA	NA	False	NA	NA	False	AATAAA	-11	NA	116011381	116026977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_116011487_116018341_116018574_116022524
ENSMUSG00000042066.17_0	chr1	-	3877	5	FSM	ENSMUSG00000042066.17	ENSMUST00000045473.16	3410	5	-473	6	-473	2	multi-exon	FALSE	canonical	3	25	junction_4	2.38484800354236	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATCCTGTCTGAGGTC	NA	False	NA	-6	True	AATAAA	-17	NA	132319492	132284058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_132285556_132286640_132286777_132288012_132288954_132308394_132308920_132318714
ENSMUSG00000042066.17_1	chr1	-	2832	2	ISM	ENSMUSG00000042066.17	ENSMUST00000136828.3	2771	4	6840	0	4716	0	3prime_fragment	FALSE	canonical	3	30	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGTCTGAGGTCTGCTG	3816	False	NA	-1	True	AATAAA	-22	NA	132287970	132284053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_132285556_132286640
ENSMUSG00000042066.17_2	chr1	-	2930	4	ISM	ENSMUSG00000042066.17	ENSMUST00000132435.2	3514	5	9306	-2	9306	2	3prime_fragment	FALSE	canonical	3	27	junction_2	1.69967317119759	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATCCTGTCTGAGGTC	NA	False	NA	-6	True	AATAAA	-17	NA	132308750	132284058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_132285556_132286640_132286777_132288012_132288954_132308394
ENSMUSG00000042066.17_3	chr1	-	1385	1	ISM	ENSMUSG00000042066.17	ENSMUST00000045473.16	3410	5	33576	6	7243	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATCCTGTCTGAGGTC	6343	False	NA	-6	True	AATAAA	-17	NA	132285443	132284058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_132284100_132285400
ENSMUSG00000042066.17_4	chr1	-	2252	3	ISM	ENSMUSG00000042066.17	ENSMUST00000136828.3	2771	4	6179	5	4055	2	3prime_fragment	FALSE	canonical	3	27	junction_2	1.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATCCTGTCTGAGGTC	3155	False	NA	-6	True	AATAAA	-17	NA	132288631	132284058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_132285556_132286640_132286777_132288012
ENSMUSG00000042066.17_6	chr1	-	5088	4	NIC	ENSMUSG00000042066.17	novel	3410	5	NA	NA	-448	2	intron_retention	FALSE	canonical	3	25	junction_3	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATCCTGTCTGAGGTC	NA	False	NA	-6	True	AATAAA	-17	NA	132319467	132284058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_132285556_132286640_132288954_132308394_132308920_132318714
ENSMUSG00000042073.16_0	chr9	+	1462	4	FSM	ENSMUSG00000042073.16	ENSMUST00000048527.15	1745	4	275	8	-3	-5	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTCACATGCTTTTGCT	NA	False	NA	5	True	AATAAA	-12	NA	106325848	106330114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_106325909_106327202_106327431_106328591_106328834_106329182
ENSMUSG00000042073.16_2	chr9	+	1790	3	ISM	ENSMUSG00000042073.16	ENSMUST00000048527.15	1745	4	301	3	23	0	intron_retention	FALSE	canonical	1	1	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACATGCTTTTGCTGTCTC	NA	False	NA	10	True	AATAAA	-17	NA	106325874	106330119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_106325909_106327202_106327431_106328591
ENSMUSG00000042078.15_1	chr5	-	3094	16	NIC	ENSMUSG00000042078.15	novel	3379	16	NA	NA	-760	-58	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	7.55836549056004	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTACTATGGGATTTAAA	NA	False	NA	-5	True	ATTAAA	-14	NA	114204039	114165028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866_114180993_114183628_114183693_114192537_114192663_114198118_114198191_114201085_114201185_114202928_114203015_114203586_114203748_114203847
ENSMUSG00000042078.15_2	chr5	-	3154	17	NIC	ENSMUSG00000042078.15	novel	3379	16	NA	NA	136	-53	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	7.68826215734089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATGGGATTTAAATCTGG	NA	False	NA	0	True	ATTAAA	-19	NA	114229292	114165023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866_114180993_114183628_114183693_114192537_114192663_114198118_114198191_114201085_114201185_114202928_114203015_114203586_114203748_114203847_114204015_114229212
ENSMUSG00000042078.15_3	chr5	-	2333	9	ISM	ENSMUSG00000042078.15	ENSMUST00000134790.8	1682	15	22249	-1157	-88	-58	3prime_fragment	FALSE	canonical	3	12	junction_8	2.91279504943276	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTACTATGGGATTTAAA	NA	False	NA	-5	True	ATTAAA	-14	NA	114181030	114165028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866
ENSMUSG00000042078.15_6	chr5	-	2970	16	FSM	ENSMUSG00000042078.15	ENSMUST00000058472.13	3379	16	351	58	148	-58	multi-exon	FALSE	canonical	1	1	junction_9	7.27552976307109	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTACTATGGGATTTAAA	NA	False	NA	-5	True	ATTAAA	-14	NA	114229280	114165028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866_114180993_114183628_114183693_114192537_114192663_114198118_114198191_114201085_114201185_114202928_114203015_114203586_114203748_114229212
ENSMUSG00000042079.14_19	chr6	+	2470	4	NIC	ENSMUSG00000042079.14	novel	391	5	NA	NA	10	-4	intron_retention	FALSE	canonical	3	521	junction_1	2102.13325510592	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGACTGGCACAGCTTA	3776	False	NA	NA	False	AATAAA	-10	NA	117883797	117902576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_117884170_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042079.14_29	chr6	+	2183	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	946	-4	at_least_one_novel_splicesite	FALSE	canonical	3	602	junction_1	2063.97825139274	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGACTGGCACAGCTTA	4734	False	NA	NA	False	AATAAA	-10	NA	117884755	117902576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_117884841_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042079.14_41	chr6	+	2165	4	FSM	ENSMUSG00000042079.14	ENSMUST00000179478.8	956	4	24	-1233	24	-4	multi-exon	FALSE	canonical	3	625	junction_1	2053.14430948133	953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGACTGGCACAGCTTA	NA	False	NA	NA	False	AATAAA	-10	NA	117893965	117902576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_117894033_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042079.14_43	chr6	+	2251	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	23	6	14	-4	multi-exon	FALSE	canonical	3	4878	junction_1	99	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGACTGGCACAGCTTA	NA	False	NA	NA	False	AATAAA	-10	NA	117894277	117902576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_117894560_117896059_117896121_117900668
ENSMUSG00000042079.14_58	chr6	+	1426	1	FSM	ENSMUSG00000042079.14	ENSMUST00000180341.2	1922	1	491	5	491	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	458	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACTGGCACAGCTTATG	695	False	NA	NA	False	AATAAA	-12	NA	117901152	117902578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_117901200_117902600
ENSMUSG00000042079.14_6	chr6	+	2145	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	-2	4	-2	-4	multi-exon	TRUE	canonical	3	2150	junction_1	1335.10981654028	3337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGACTGGCACAGCTTA	3732	False	NA	NA	False	AATAAA	-10	NA	117883753	117902576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042082.8_0	chr13	+	3981	8	FSM	ENSMUSG00000042082.8	ENSMUST00000091403.6	4038	8	50	7	-16	-7	multi-exon	FALSE	canonical	0	0	junction_4	3.27014946921703	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTATGTCAGCCTTGGA	NA	False	NA	NA	False	AATAAA	-14	NA	93908187	94079517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_93908601_93926546_93926734_93930535_93930727_93944003_93944212_93998594_93998839_94016995_94017067_94075734_94075858_94076973
ENSMUSG00000042082.8_2	chr13	+	1359	1	ISM	ENSMUSG00000042082.8	ENSMUST00000091403.6	4038	8	170018	10	169952	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAAACTATGTCAGCCTT	9602	False	NA	NA	False	AATAAA	-11	NA	94078155	94079514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_94078200_94079500
ENSMUSG00000042097.18_13	chr6	+	1470	1	ISM	ENSMUSG00000042097.18	ENSMUST00000172088.8	2812	4	8211	8	8204	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTGACCGTCCAATGT	6976	False	NA	4	True	NA	NA	NA	117848248	117849718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_117848200_117849700
ENSMUSG00000042097.18_20	chr6	+	2568	2	FSM	ENSMUSG00000042097.18	ENSMUST00000112857.3	538	2	-7	-2023	0	-8	multi-exon	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTGACCGTCCAATGT	NA	False	NA	4	True	NA	NA	NA	117840037	117849718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_117840104_117847216
ENSMUSG00000042097.18_3	chr6	+	2803	4	FSM	ENSMUSG00000042097.18	ENSMUST00000172088.8	2812	4	7	2	0	-2	multi-exon	FALSE	canonical	3	15	junction_2	8.52447456836295	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCGTCCAATGTGTTCAT	NA	False	NA	10	True	TTTAAA	-4	NA	117840044	117849724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_117840104_117843355_117843536_117846178_117846235_117847216
ENSMUSG00000042097.18_4	chr6	+	2611	3	FSM	ENSMUSG00000042097.18	ENSMUST00000079405.15	3158	3	19	528	12	-2	multi-exon	FALSE	canonical	3	13	junction_1	2	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCGTCCAATGTGTTCAT	NA	False	NA	10	True	TTTAAA	-4	NA	117840056	117849724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_117840104_117846178_117846235_117847216
ENSMUSG00000042097.18_5	chr6	+	2850	5	NNC	ENSMUSG00000042097.18	novel	2812	4	NA	NA	3	-27	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	9.98436277385793	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTAAATAGCTCTCTTTA	NA	False	NA	-15	True	NA	NA	NA	117840047	117849699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_117840104_117843355_117843536_117846178_117846235_117846362_117846438_117847216
ENSMUSG00000042099.17_10	chr17	+	2932	10	ISM	ENSMUSG00000042099.17	ENSMUST00000048560.11	2641	11	4	4	1	0	intron_retention	FALSE	canonical	3	204	junction_2	55.0900497390129	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTCGTATTGTGTGGAT	NA	False	NA	9	True	AATAAA	-12	NA	34029497	34041888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34029540_34035159_34035220_34036167_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259
ENSMUSG00000042099.17_14	chr17	+	2652	11	FSM	ENSMUSG00000042099.17	ENSMUST00000172649.8	2652	11	1	-1	1	1	multi-exon	FALSE	canonical	3	16	junction_2	101.139952541021	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCGTATTGTGTGGATG	NA	False	NA	10	True	AATAAA	-13	NA	34029497	34041889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34029540_34035159_34035238_34036167_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ENSMUSG00000042099.17_2	chr17	+	777	6	FSM	ENSMUSG00000042099.17	ENSMUST00000173789.2	783	6	1	5	1	0	multi-exon	FALSE	canonical	3	63	junction_2	124.071592236096	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAGTTCGTATTGTGTGG	NA	False	NA	7	True	AATAAA	-10	NA	34029497	34041886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34029540_34035159_34035220_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ENSMUSG00000042099.17_3	chr17	+	2631	11	FSM	ENSMUSG00000042099.17	ENSMUST00000048560.11	2641	11	4	6	1	0	multi-exon	FALSE	canonical	3	204	junction_2	56.7176339421877	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAGTTCGTATTGTGTGG	NA	False	NA	7	True	AATAAA	-10	NA	34029497	34041886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34029540_34035159_34035220_34036167_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ENSMUSG00000042099.17_64	chr17	+	1885	9	ISM	ENSMUSG00000042099.17	ENSMUST00000172649.8	2652	11	7317	0	-67	0	3prime_fragment	FALSE	canonical	3	265	junction_4	41.1868835310466	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTCGTATTGTGTGGAT	4452	False	NA	9	True	AATAAA	-12	NA	34036813	34041888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ENSMUSG00000042102.8_2	chr13	+	2835	16	FSM	ENSMUSG00000042102.8	ENSMUST00000048001.8	2992	16	-17	174	-17	-174	multi-exon	FALSE	canonical	2	5	junction_1	2.8720878971384	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCTTTTTATTACTGGCG	2457	False	NA	NA	False	AATGAA	-29	NA	93810923	93889167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_93811041_93813542_93813712_93823435_93823535_93825032_93825198_93828379_93828585_93840294_93840544_93843138_93843338_93845180_93845351_93845689_93845844_93847800_93847967_93848553_93848685_93851965_93852184_93854062_93854221_93857066_93857127_93880800_93880936_93888727
ENSMUSG00000042102.8_3	chr13	+	2344	13	ISM	ENSMUSG00000042102.8	ENSMUST00000048001.8	2992	16	-29	34989	-29	5676	5prime_fragment	FALSE	canonical	2	5	junction_1	2.84189881749666	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAAAGAACTCCCCTGCC	2445	False	NA	NA	False	ATTAAA	-12	NA	93810911	93854352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_93811041_93813542_93813712_93823435_93823535_93825032_93825198_93828379_93828585_93840294_93840544_93843138_93843338_93845180_93845351_93845689_93845844_93847800_93847967_93848553_93848685_93851965_93852184_93854062
ENSMUSG00000042104.19_0	chr14	-	5276	39	FSM	ENSMUSG00000042104.19	ENSMUST00000156203.8	6456	39	25	1155	25	-1	multi-exon	TRUE	canonical	0	0	junction_5	1.51355829942615	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCAAATACTCTATATTTA	NA	False	NA	NA	False	AATAAA	-26	NA	119336817	119223605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_119224326_119232357_119232485_119235508_119235626_119239182_119239298_119240237_119240399_119244556_119244740_119245474_119245560_119246410_119246507_119250887_119250971_119251934_119252020_119256229_119256316_119256878_119257038_119263833_119264024_119266374_119266455_119269605_119269709_119272253_119272350_119273381_119273507_119278904_119279037_119280007_119280215_119281911_119282004_119286592_119286692_119286772_119286897_119287047_119287213_119292015_119292148_119294974_119295111_119295606_119295693_119296432_119296553_119298651_119298803_119308222_119308315_119312742_119312804_119315063_119315164_119319116_119319218_119321266_119321340_119323549_119323647_119326576_119326752_119328062_119328176_119328605_119328737_119332718_119332802_119336622
ENSMUSG00000042105.19_0	chr7	+	4578	20	FSM	ENSMUSG00000042105.19	ENSMUST00000043138.13	4734	20	1	155	1	-4	multi-exon	FALSE	canonical	3	45	junction_6	8.64088073894081	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATCAGCGTATGAGAA	7177	False	NA	11	True	ATTAAA	-17	NA	128213084	128297994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_128213416_128237881_128237963_128260739_128260877_128265361_128265491_128265700_128265869_128265972_128266030_128269320_128269520_128270137_128270318_128271654_128271723_128277021_128277147_128278452_128278531_128279720_128279842_128281440_128281570_128283971_128284090_128286809_128287009_128292350_128292423_128293475_128293550_128293977_128294107_128295368_128295457_128295899
ENSMUSG00000042105.19_3	chr7	+	1549	8	ISM	ENSMUSG00000042105.19	ENSMUST00000098007.11	1906	10	9	2786	9	60	5prime_fragment	TRUE	canonical	3	45	junction_6	9.98570406702931	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGATCAGGTGCCAG	7153	False	NA	NA	False	NA	NA	NA	128213060	128270560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_128213416_128237881_128237963_128260739_128260877_128265361_128265491_128265700_128265869_128265972_128266030_128269320_128269520_128270137
ENSMUSG00000042105.19_8	chr7	+	4503	19	NIC	ENSMUSG00000042105.19	novel	4734	20	NA	NA	2	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	15.9764487161649	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAACATCAGCGTATGAG	7178	False	NA	9	True	ATTAAA	-15	NA	128213085	128297992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_128213416_128237881_128237963_128260739_128260877_128265361_128265491_128265700_128265869_128265972_128266030_128269320_128269520_128270137_128270318_128271654_128271723_128277021_128277147_128278452_128278531_128279720_128279842_128281440_128281570_128283971_128284090_128286809_128287009_128293475_128293550_128293977_128294107_128295368_128295457_128295899
ENSMUSG00000042106.6_0	chr9	-	1022	2	FSM	ENSMUSG00000042106.6	ENSMUST00000048568.6	1025	2	0	3	0	-3	multi-exon	FALSE	canonical	3	12	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGCTGGTCCCATACTC	9756	False	NA	NA	False	AATAAA	-14	NA	107863078	107861424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107862264_107862895
ENSMUSG00000042111.10_0	chr1	-	1378	5	FSM	ENSMUSG00000042111.10	ENSMUST00000042493.10	1705	5	319	8	319	0	multi-exon	FALSE	canonical	3	256	junction_1	5.33853912601566	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTCACAGAGCTCTCAT	7523	False	NA	-7	True	AATAAA	-15	NA	34478434	34475758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
ENSMUSG00000042115.5_0	chr1	+	2101	5	FSM	ENSMUSG00000042115.5	ENSMUST00000046071.5	4269	5	-11	2179	-11	-2179	multi-exon	FALSE	canonical	0	0	junction_3	0.707106781186548	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCCCTTGTTTCTCTTTGG	22	False	NA	NA	False	GATAAA	-24	NA	132226352	132232916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_132227391_132230262_132230428_132230677_132230894_132231466_132231569_132232336
ENSMUSG00000042118.8_1	chr13	-	1759	7	NIC	ENSMUSG00000042118.8	novel	2467	8	NA	NA	-17	-533	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	3.39934634239519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTAGCTTGAATGGCATC	NA	False	NA	NA	False	ATTAAA	-24	NA	93810827	93792760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_93793653_93798809_93799039_93799653_93799837_93800181_93800330_93805762_93805855_93807920_93808054_93810745
ENSMUSG00000042118.8_2	chr13	-	1948	8	FSM	ENSMUSG00000042118.8	ENSMUST00000015941.8	2467	8	-21	540	-21	-540	multi-exon	FALSE	canonical	3	8	junction_1	2.60298102261266	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTTGAGTAGCTTGAA	NA	False	NA	NA	False	ATTAAA	-17	NA	93810831	93792767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_93793653_93798809_93799039_93799653_93799837_93800181_93800330_93803081_93803274_93805762_93805855_93807920_93808054_93810745
ENSMUSG00000042121.17_0	chr5	-	3749	15	FSM	ENSMUSG00000042121.17	ENSMUST00000159592.8	8436	15	105	4582	-10	516	multi-exon	FALSE	canonical	3	321	junction_13	43.65589003438	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTTCTGAGAACAATGCTA	NA	False	NA	-10	True	TATAAA	-18	NA	114131850	114079736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114127706_114127748_114131724
ENSMUSG00000042121.17_1	chr5	-	4209	14	NNC	ENSMUSG00000042121.17	novel	3164	14	NA	NA	-6043	1071	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_13	82.9598177489967	142	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCGGCTCCCCCTTGCT	NA	False	NA	NA	False	AATAGA	-17	NA	114110860	114079181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114110788
ENSMUSG00000042121.17_17	chr5	-	2722	1	ISM	ENSMUSG00000042121.17	ENSMUST00000159592.8	8436	15	51399	2680	24261	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAGCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114080556	114077834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_114077800_114080600
ENSMUSG00000042121.17_4	chr5	-	2470	1	ISM	ENSMUSG00000042121.17	ENSMUST00000159592.8	8436	15	54324	7	27186	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTCCTGTGTATGCTA	NA	False	NA	-18	True	AATAAA	-12	NA	114077631	114075161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_114075200_114077600
ENSMUSG00000042121.17_5	chr5	-	3913	2	ISM	ENSMUSG00000042121.17	ENSMUST00000077689.14	3164	14	43247	-2418	20260	-9	3prime_fragment	FALSE	canonical	3	378	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAGCAAAAAAAAAAA	6824	False	NA	NA	False	NA	NA	NA	114084557	114077834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_114081527_114084336
ENSMUSG00000042129.9_0	chr6	-	4675	11	FSM	ENSMUSG00000042129.9	ENSMUST00000035842.7	6460	11	154	1631	0	-1631	multi-exon	FALSE	canonical	3	10	junction_1	5.29528091794949	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTGACTCTGTTAAGT	8760	False	NA	NA	False	NA	NA	NA	116650759	116611599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_116615260_116616401_116616500_116617193_116617316_116618388_116618441_116618645_116618748_116622056_116622218_116622846_116622939_116624527_116624671_116636485_116636562_116638803_116638898_116650684
ENSMUSG00000042129.9_4	chr6	-	4544	1	ISM	ENSMUSG00000042129.9	ENSMUST00000035842.7	6460	11	36401	0	3451	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCGTGTGTTACTGTTT	NA	False	NA	0	True	AATAAA	-18	NA	116614512	116609968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_116610000_116614500
ENSMUSG00000042133.17_0	chr2	+	2681	14	FSM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	36	3410	-13	1054	multi-exon	TRUE	canonical	3	282	junction_1	41.7748260879032	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAACAACACTTTG	NA	False	NA	NA	False	AATAAA	-10	NA	69553184	69580946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
ENSMUSG00000042133.17_13	chr2	+	2872	14	FSM	ENSMUSG00000042133.17	ENSMUST00000040915.15	6245	14	-37	3410	-37	1054	multi-exon	FALSE	canonical	3	35	junction_1	98.4826299525295	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAACAACACTTTG	NA	False	NA	NA	False	AATAAA	-10	NA	69553399	69580946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_69553708_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
ENSMUSG00000042133.17_3	chr2	+	2770	15	NIC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	-12	1054	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	118.295461986209	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAACAACACTTTG	NA	False	NA	NA	False	AATAAA	-10	NA	69553185	69580946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_69553302_69561834_69561925_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
ENSMUSG00000042133.17_49	chr2	+	1883	5	ISM	ENSMUSG00000042133.17	ENSMUST00000040915.15	6245	14	18442	3410	-134	1054	3prime_fragment	FALSE	canonical	3	349	junction_2	36.0589794642056	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAACAACACTTTG	NA	False	NA	NA	False	AATAAA	-10	NA	69571878	69580946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
ENSMUSG00000042133.17_53	chr2	+	4183	1	ISM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	27011	14	8147	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACAATAAACAATTTGGG	NA	False	NA	NA	False	AATAAA	-5	NA	69580159	69584342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_69580200_69584300
ENSMUSG00000042138.10_0	chr9	+	2346	4	FSM	ENSMUSG00000042138.10	ENSMUST00000048604.8	2291	4	-21	-34	-19	34	multi-exon	FALSE	canonical	3	35	junction_1	92.182186758373	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGTGTGCTAGTTGAGC	376	False	NA	NA	False	TTTAAA	-41	NA	37400595	37435480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_37401130_37428512_37428769_37430022_37430084_37433985
ENSMUSG00000042138.10_1	chr9	+	2188	4	FSM	ENSMUSG00000042138.10	ENSMUST00000214298.2	423	4	-299	-1466	-18	33	multi-exon	FALSE	canonical	3	84	junction_1	69.0909223817106	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGGTGTGCTAGTTGAG	377	False	NA	NA	False	TTTAAA	-40	NA	37400596	37435479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_37401130_37428668_37428769_37430022_37430084_37433985
ENSMUSG00000042138.10_11	chr9	+	2279	5	NIC	ENSMUSG00000042138.10	novel	423	4	NA	NA	-18	34	combination_of_known_junctions	FALSE	canonical	3	27	junction_2	97.7010747126151	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGTGTGCTAGTTGAGC	377	False	NA	NA	False	TTTAAA	-41	NA	37400596	37435480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_37401130_37424909_37425000_37428668_37428769_37430022_37430084_37433985
ENSMUSG00000042138.10_27	chr9	+	3513	3	FSM	ENSMUSG00000042138.10	ENSMUST00000213411.2	742	3	-1597	-1174	-1597	30	multi-exon	FALSE	canonical	3	228	junction_2	2.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTTGGGTGTGCTAGTT	NA	False	NA	NA	False	TTTAAA	-37	NA	37426807	37435476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_37428769_37430022_37430084_37433985
ENSMUSG00000042138.10_29	chr9	+	1256	1	ISM	ENSMUSG00000042138.10	ENSMUST00000211060.2	2165	4	33610	441	5820	34	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGTGTGCTAGTTGAGC	33	False	NA	NA	False	TTTAAA	-41	NA	37434224	37435480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_37434200_37435500
ENSMUSG00000042138.10_4	chr9	+	5946	4	NIC	ENSMUSG00000042138.10	novel	2591	4	NA	NA	-17	33	intron_retention	FALSE	canonical	3	44	junction_1	87.9406365428154	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGGTGTGCTAGTTGAG	378	False	NA	NA	False	TTTAAA	-40	NA	37400597	37435479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_37401130_37424909_37428769_37430022_37430084_37433985
ENSMUSG00000042138.10_7	chr9	+	2083	3	NIC	ENSMUSG00000042138.10	novel	2591	4	NA	NA	-12	34	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	110.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGTGTGCTAGTTGAGC	383	False	NA	NA	False	TTTAAA	-41	NA	37400602	37435480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_37401130_37430022_37430084_37433985
ENSMUSG00000042148.9_0	chr11	-	2900	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	4	11	4	-11	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	379	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTAAAAGAACCTGAGCGT	5011	False	NA	-15	True	AATAAA	-3	NA	63970288	63853463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
ENSMUSG00000042155.4_0	chr2	+	3887	4	NIC	ENSMUSG00000042155.4	novel	653	2	NA	NA	-8	-581	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	2.94392028877595	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCTGTAACTTTAATTG	5038	False	NA	NA	False	AATAAA	-13	NA	69652279	69666414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_69652404_69654130_69655345_69659189_69659343_69664018
ENSMUSG00000042155.4_2	chr2	+	3905	4	FSM	ENSMUSG00000042155.4	ENSMUST00000053087.4	4617	4	130	582	130	-582	multi-exon	FALSE	canonical	0	0	junction_1	4.78423336480244	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATCTGTAACTTTAATT	5602	False	NA	NA	False	AATAAA	-12	NA	69652843	69666413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_69652987_69654130_69655345_69659189_69659343_69664018
ENSMUSG00000042155.4_3	chr2	+	3950	4	NNC	ENSMUSG00000042155.4	novel	839	2	NA	NA	432	-581	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	1.63299316185545	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCTGTAACTTTAATTG	5904	False	NA	NA	False	AATAAA	-13	NA	69653145	69666414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_69653333_69654130_69655345_69659189_69659343_69664018
ENSMUSG00000042155.4_5	chr2	+	4275	3	ISM	ENSMUSG00000042155.4	ENSMUST00000053087.4	4617	4	902	584	902	-584	3prime_fragment	FALSE	canonical	3	9	junction_1	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAAATCTGTAACTTTAA	6374	False	NA	NA	False	AATAAA	-10	NA	69653615	69666411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_69655345_69659189_69659343_69664018
ENSMUSG00000042156.17_2	chr14	-	4047	22	FSM	ENSMUSG00000042156.17	ENSMUST00000004055.10	4079	22	31	1	31	0	multi-exon	TRUE	canonical	3	20	junction_20	6.55588223176215	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGACTGTGGCTGCT	NA	False	NA	-7	True	AGTAAA	-13	NA	119162768	119113670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_119114675_119116755_119116925_119118421_119118553_119120776_119120980_119123017_119123072_119123909_119124040_119124479_119124643_119126667_119126805_119129181_119129245_119133262_119133320_119137397_119137455_119138912_119138962_119139426_119139568_119144306_119144370_119146845_119146984_119148753_119148916_119149853_119149979_119152601_119152687_119159654_119160204_119160322_119160580_119161836_119161931_119162552
ENSMUSG00000042156.17_29	chr14	-	4060	22	NIC	ENSMUSG00000042156.17	novel	4079	22	NA	NA	10	-5	combination_of_known_junctions	FALSE	canonical	3	9	junction_15	9.03231788855492	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACACACTGCGACTGTGG	NA	False	NA	-12	True	AGTAAA	-8	NA	119162789	119113675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_119114675_119116755_119116925_119118421_119118553_119120776_119120980_119123017_119123072_119123909_119124040_119124479_119124643_119126667_119126805_119129181_119129245_119133262_119133320_119137397_119137455_119138912_119138962_119139426_119139568_119144306_119144370_119146845_119146981_119148753_119148916_119149853_119149979_119152601_119152687_119159654_119160204_119160322_119160580_119161836_119161931_119162552
ENSMUSG00000042156.17_5	chr14	-	4275	23	NIC	ENSMUSG00000042156.17	novel	4079	22	NA	NA	-3	-2	combination_of_known_junctions	FALSE	canonical	3	9	junction_15	11.4989219760624	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTGCGACTGTGGCTG	NA	False	NA	-9	True	AGTAAA	-11	NA	119162802	119113672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_119114675_119116755_119116925_119118421_119118553_119120776_119120980_119123017_119123072_119123909_119124040_119124479_119124643_119126667_119126805_119129181_119129245_119133262_119133320_119137397_119137455_119138912_119138962_119139426_119139568_119144306_119144370_119146845_119146981_119148753_119148916_119149853_119149979_119152601_119152687_119159654_119160204_119160322_119160580_119161308_119161508_119161836_119161931_119162552
ENSMUSG00000042156.17_9	chr14	-	4265	23	NIC	ENSMUSG00000042156.17	novel	4079	22	NA	NA	10	-2	combination_of_known_junctions	FALSE	canonical	3	9	junction_20	9.99721035469561	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTGCGACTGTGGCTG	NA	False	NA	-9	True	AGTAAA	-11	NA	119162789	119113672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_119114675_119116755_119116925_119118421_119118553_119120776_119120980_119123017_119123072_119123909_119124040_119124479_119124643_119126667_119126805_119129181_119129245_119133262_119133320_119137397_119137455_119138912_119138962_119139426_119139568_119144306_119144370_119146845_119146984_119148753_119148916_119149853_119149979_119152601_119152687_119159654_119160204_119160322_119160580_119161308_119161508_119161836_119161931_119162552
ENSMUSG00000042165.9_0	chr3	-	1333	1	FSM	ENSMUSG00000042165.9	ENSMUST00000192538.2	1392	1	20	39	20	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTGTCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	92336710	92335377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_92335400_92336700
ENSMUSG00000042167.7_1	chr13	-	1972	15	FSM	ENSMUSG00000042167.7	ENSMUST00000048702.7	2990	15	-107	1125	-5	210	multi-exon	FALSE	canonical	3	135	junction_4	92.51905484928	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGTATTTTTGAAAATG	NA	False	NA	NA	False	AATAAA	-15	NA	93328898	93283915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311227_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601
ENSMUSG00000042167.7_3	chr13	-	1958	15	FSM	ENSMUSG00000042167.7	ENSMUST00000225868.2	3081	15	-6	1129	-6	207	multi-exon	FALSE	canonical	3	122	junction_9	113.762104088007	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAATGTATTTTTGAAA	NA	False	NA	NA	False	AATAAA	-12	NA	93328899	93283918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311215_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601
ENSMUSG00000042178.7_0	chr7	+	3069	6	FSM	ENSMUSG00000042178.7	ENSMUST00000044660.6	3834	6	758	7	758	-7	multi-exon	FALSE	canonical	3	88	junction_1	5.30659966456864	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGCTGCTGTGTGGGG	NA	False	NA	3	True	ATTAAA	-14	NA	127837286	127844265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127837762_127839053_127839162_127839254_127840042_127841351_127841849_127842511_127842645_127843196
ENSMUSG00000042178.7_14	chr7	+	1956	4	ISM	ENSMUSG00000042178.7	ENSMUST00000044660.6	3834	6	3256	7	3256	-7	3prime_fragment	FALSE	canonical	3	92	junction_1	3.55902608401044	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGCTGCTGTGTGGGG	NA	False	NA	3	True	ATTAAA	-14	NA	127839784	127844265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127840042_127841351_127841849_127842511_127842645_127843196
ENSMUSG00000042178.7_2	chr7	+	2572	5	NIC	ENSMUSG00000042178.7	novel	3834	6	NA	NA	758	-7	combination_of_known_splicesites	FALSE	canonical	3	7	junction_3	39.1942278913618	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGCTGCTGTGTGGGG	NA	False	NA	3	True	ATTAAA	-14	NA	127837286	127844265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127837762_127839053_127839162_127839254_127840042_127842511_127842645_127843196
ENSMUSG00000042178.7_4	chr7	+	2595	5	ISM	ENSMUSG00000042178.7	ENSMUST00000044660.6	3834	6	2524	7	2524	-7	3prime_fragment	FALSE	canonical	3	92	junction_2	3.76662979332984	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGCTGCTGTGTGGGG	NA	False	NA	3	True	ATTAAA	-14	NA	127839052	127844265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127839162_127839254_127840042_127841351_127841849_127842511_127842645_127843196
ENSMUSG00000042182.17_0	chr1	-	2436	7	FSM	ENSMUSG00000042182.17	ENSMUST00000062289.11	2487	7	43	8	-5	-8	multi-exon	FALSE	canonical	3	24	junction_2	6.36832439151427	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTAATGCACTTTCTTA	NA	False	NA	-6	True	AATAAA	-15	NA	33946854	33891140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_33892449_33901734_33901855_33902822_33903016_33903603_33903825_33917340_33917519_33922521_33922730_33946646
ENSMUSG00000042182.17_2	chr1	-	2254	6	ISM	ENSMUSG00000042182.17	ENSMUST00000062289.11	2487	7	24148	2	174	-2	3prime_fragment	FALSE	canonical	3	24	junction_2	6.16441400296898	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCACTTTCTTATGGTTC	NA	False	NA	0	True	AATAAA	-21	NA	33922749	33891134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_33892449_33901734_33901855_33902822_33903016_33903603_33903825_33917340_33917519_33922521
ENSMUSG00000042182.17_8	chr1	-	1403	4	NIC	ENSMUSG00000042182.17	novel	382	3	NA	NA	6	666	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	17.4610678049451	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGACCAGTGTTCATGTG	NA	False	NA	NA	False	AAAACA	-29	NA	33946843	33912172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_33912993_33917340_33917519_33922521_33922730_33946646
ENSMUSG00000042182.17_9	chr1	-	1106	3	ISM	ENSMUSG00000042182.17	ENSMUST00000062289.11	2487	7	26	25713	1	-4007	5prime_fragment	FALSE	canonical	3	39	junction_2	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACCAAAACAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	33946871	33916845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_33917519_33922521_33922730_33946646
ENSMUSG00000042185.15_0	chr9	+	5183	26	NIC	ENSMUSG00000042185.15	novel	5398	26	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	9.17387595294377	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCTGGGCCTTTAATCA	NA	False	NA	4	True	ATTAAA	-12	NA	31297499	31332627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308295_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312000_31312233_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
ENSMUSG00000042185.15_1	chr9	+	5147	26	FSM	ENSMUSG00000042185.15	ENSMUST00000086167.12	5161	26	11	3	-1	-3	multi-exon	FALSE	canonical	3	28	junction_5	11.7439346047226	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTCTGGGCCTTTAATC	NA	False	NA	3	True	ATTAAA	-11	NA	31297498	31332626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308331_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312000_31312233_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
ENSMUSG00000042185.15_2	chr9	+	5391	26	FSM	ENSMUSG00000042185.15	ENSMUST00000132329.8	5398	26	5	2	-2	-2	multi-exon	FALSE	canonical	2	9	junction_5	14.7460638815923	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCTGGGCCTTTAATCA	NA	False	NA	4	True	ATTAAA	-12	NA	31297497	31332627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308089_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312000_31312233_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
ENSMUSG00000042185.15_35	chr9	+	2108	4	ISM	ENSMUSG00000042185.15	ENSMUST00000128375.8	4808	17	14977	3	4769	-3	3prime_fragment	FALSE	canonical	3	74	junction_1	0.942809041582063	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTCTGGGCCTTTAATC	NA	False	NA	3	True	ATTAAA	-11	NA	31325491	31332626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_31326081_31330271_31330379_31331109_31331246_31331350
ENSMUSG00000042190.13_7	chr5	-	435	1	Genic_Genomic	ENSMUSG00000042190.13	novel	NA	NA	NA	NA	14863	36	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAAGGCGTACTCTCC	NA	False	NA	36	True	AATACA	-7	NA	113750813	113750378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_-_113750400_113750800
ENSMUSG00000042195.10_0	chr9	+	2348	8	FSM	ENSMUSG00000042195.10	ENSMUST00000048670.10	2558	8	203	7	203	-7	multi-exon	FALSE	canonical	3	165	junction_1	9.10931346681706	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCATGGAAGTAGAATC	NA	False	NA	32	True	AATAAA	-39	NA	53679024	53725431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_53679179_53705121_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
ENSMUSG00000042195.10_7	chr9	+	2051	7	ISM	ENSMUSG00000042195.10	ENSMUST00000048670.10	2558	8	26449	1	-12730	-1	3prime_fragment	FALSE	canonical	3	166	junction_5	8.97527467855751	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAAGTAGAATCACAATG	NA	False	NA	38	True	AATAAA	-45	NA	53705270	53725437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
ENSMUSG00000042197.14_0	chr1	-	3962	15	FSM	ENSMUSG00000042197.14	ENSMUST00000019861.13	3958	15	-11	7	-11	-7	multi-exon	FALSE	canonical	3	234	junction_7	31.7753594690564	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAACTAAGAGGAAATT	NA	False	NA	-9	True	AATAAA	-10	NA	33853619	33800632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_33801291_33804924_33804991_33808801_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
ENSMUSG00000042197.14_35	chr1	-	3313	13	ISM	ENSMUSG00000042197.14	ENSMUST00000019861.13	3958	15	-5	8095	-5	7903	5prime_fragment	FALSE	canonical	3	234	junction_5	31.6503247306494	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAACTGCTGTCTGTTTC	NA	False	NA	-4	True	AATAAA	-13	NA	33853613	33808720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
ENSMUSG00000042197.14_4	chr1	-	2179	6	ISM	ENSMUSG00000042197.14	ENSMUST00000139143.8	3578	13	37121	7	6673	-7	3prime_fragment	FALSE	canonical	3	264	junction_2	25.1284699096463	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAACTAAGAGGAAATT	NA	False	NA	-9	True	AATAAA	-10	NA	33816345	33800632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_33801291_33804924_33804991_33808801_33808989_33809849_33809981_33811973_33812115_33815349
ENSMUSG00000042197.14_51	chr1	-	6281	4	FSM	ENSMUSG00000042197.14	ENSMUST00000044455.8	11876	4	39	5556	-4	-5556	multi-exon	FALSE	canonical	3	15	junction_1	149.247743329301	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTGGAGTCCCATTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	33853612	33836772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_33842695_33844419_33844501_33852807_33852892_33853418
ENSMUSG00000042198.13_1	chr4	+	545	5	FSM	ENSMUSG00000042198.13	ENSMUST00000108386.8	524	5	-21	0	-21	0	multi-exon	FALSE	canonical	3	128	junction_1	133.401649165218	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTTGGGGTTTTT	NA	False	NA	25	True	ATTAAA	-18	NA	3938866	3943523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_3938963_3939378_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUSG00000042198.13_10	chr4	+	1096	4	ISM	ENSMUSG00000042198.13	ENSMUST00000108386.8	524	5	-6	2	-6	0	intron_retention	FALSE	canonical	3	128	junction_1	149.106971295406	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACATGTTTTGGGGTTT	NA	False	NA	23	True	ATTAAA	-16	NA	3938881	3943521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_3938963_3939378_3939527_3941245_3941312_3942720
ENSMUSG00000042198.13_12	chr4	+	3235	2	ISM	ENSMUSG00000042198.13	ENSMUST00000119403.2	695	3	-1974	2	-8	0	intron_retention	FALSE	canonical	3	436	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTTGGGGTTTTT	NA	False	NA	25	True	ATTAAA	-18	NA	3938879	3943523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_3941312_3942720
ENSMUSG00000042198.13_19	chr4	+	575	4	FSM	ENSMUSG00000042198.13	ENSMUST00000119307.8	889	4	333	-19	-169	0	multi-exon	FALSE	canonical	3	416	junction_3	14.7271480229163	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTTGGGGTTTTT	334	False	NA	25	True	ATTAAA	-18	NA	3939252	3943523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUSG00000042198.13_2	chr4	+	624	5	FSM	ENSMUSG00000042198.13	ENSMUST00000121651.8	620	5	-2	-2	-2	0	multi-exon	FALSE	canonical	3	48	junction_1	167.916645988419	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTTGGGGTTTTT	-7	True	NA	25	True	ATTAAA	-18	NA	3938911	3943523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_3939132_3939423_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUSG00000042198.13_4	chr4	+	667	5	FSM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	0	5	0	0	multi-exon	FALSE	canonical	3	280	junction_1	68.1762421962372	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTTGGGGTTTTT	-5	True	NA	25	True	ATTAAA	-18	NA	3938913	3943523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUSG00000042198.13_7	chr4	+	1233	4	ISM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	1	6	1	1	intron_retention	FALSE	canonical	3	280	junction_1	77.5857948052062	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACATGTTTTGGGGTTTT	-4	True	NA	24	True	ATTAAA	-17	NA	3938914	3943522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720
ENSMUSG00000042198.13_9	chr4	+	495	5	FSM	ENSMUSG00000042198.13	ENSMUST00000149544.8	426	5	-24	-45	-22	-4	multi-exon	FALSE	canonical	3	70	junction_1	158.419537936455	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTGAAACATGTTTTGGG	NA	False	NA	19	True	ATTAAA	-12	NA	3938865	3943517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_3938963_3939423_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUSG00000042202.16_12	chr4	+	1263	1	ISM	ENSMUSG00000042202.16	ENSMUST00000105608.9	6291	9	20660	2	11873	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGCAGTAGCCTCCTC	1169	False	NA	12	True	AATAAA	-17	NA	155706532	155707795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_155706500_155707800
ENSMUSG00000042202.16_5	chr4	+	2967	9	FSM	ENSMUSG00000042202.16	ENSMUST00000118607.2	2166	9	-30	-771	-30	0	multi-exon	FALSE	canonical	2	8	junction_6	4.43705983732471	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGATGGCAGACGTTGGAT	NA	False	NA	NA	False	AATAAA	-14	NA	155686370	155704547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155686620_155694295_155694777_155694957_155695094_155696072_155696201_155697073_155697195_155700025_155700080_155700639_155700713_155702071_155702218_155702968
ENSMUSG00000042203.9_1	chr17	+	3588	13	FSM	ENSMUSG00000042203.9	ENSMUST00000048677.9	3595	13	6	1	0	0	multi-exon	TRUE	canonical	3	108	junction_11	15.481844205391	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCGGGGCTTTGGTTTCCT	NA	False	NA	10	True	AATAAA	-16	NA	29768764	29825868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29813650_29813758_29814821_29814898_29818812_29818941_29819119_29819216_29823817
ENSMUSG00000042203.9_30	chr17	+	1484	1	ISM	ENSMUSG00000042203.9	ENSMUST00000048677.9	3595	13	55624	3	32986	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTCGGGGCTTTGGTTTC	NA	False	NA	8	True	AATAAA	-14	NA	29824382	29825866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29824400_29825900
ENSMUSG00000042203.9_6	chr17	+	3531	12	NIC	ENSMUSG00000042203.9	novel	3595	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	13	junction_1	38.1705611111127	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCGGGGCTTTGGTTTCCT	NA	False	NA	10	True	AATAAA	-16	NA	29768764	29825868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_29768969_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29813650_29813758_29814821_29814898_29818812_29818941_29819119_29819216_29823817
ENSMUSG00000042207.18_3	chr1	+	5567	27	FSM	ENSMUSG00000042207.18	ENSMUST00000047714.14	8714	27	52	3095	16	668	multi-exon	FALSE	canonical	0	0	junction_3	194.173731152858	1465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACTAGACTACAGCTTC	6767	False	NA	6	True	AATAAA	-16	NA	134487960	134559928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_134488281_134512891_134512970_134515659_134515783_134516514_134516686_134521066_134521202_134523537_134523635_134525320_134525431_134526797_134526957_134528371_134528492_134530187_134530347_134532179_134532362_134533450_134533614_134535425_134535546_134536602_134536798_134540925_134541108_134541624_134541750_134543655_134543807_134543926_134544042_134545429_134545786_134547297_134547437_134548580_134548761_134549672_134549832_134552448_134552935_134555002_134555115_134556335_134556491_134558170_134558492_134558974
ENSMUSG00000042208.16_3	chr11	-	4122	22	FSM	ENSMUSG00000042208.16	ENSMUST00000180260.8	4128	22	2	4	2	-4	multi-exon	TRUE	canonical	3	83	junction_12	9.91208520476776	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGACAAAAATTGTGGAGA	NA	False	NA	-19	True	AATAAA	-5	NA	23583629	23523791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_23525518_23526730_23526823_23531595_23531685_23532866_23532941_23533097_23533127_23534519_23534612_23538634_23538735_23539950_23539984_23543425_23543526_23545380_23545527_23556613_23556767_23559000_23559125_23561746_23561858_23561961_23562049_23565095_23565257_23567137_23567197_23570228_23570468_23572435_23572530_23574935_23575123_23578872_23579032_23581204_23581335_23583492
ENSMUSG00000042210.18_0	chr9	-	1230	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	28	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.56165113888	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106324849	106317252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323029_106324729
ENSMUSG00000042210.18_19	chr9	-	1226	7	FSM	ENSMUSG00000042210.18	ENSMUST00000048685.13	1256	7	27	3	27	0	multi-exon	FALSE	canonical	0	0	junction_2	104.56165113888	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106324850	106317252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322851_106322969_106323029_106324729
ENSMUSG00000042210.18_2	chr9	-	1235	7	NIC	ENSMUSG00000042210.18	novel	1262	6	NA	NA	28	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.893067242576	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106324849	106317252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
ENSMUSG00000042210.18_3	chr9	-	526	2	ISM	ENSMUSG00000042210.18	ENSMUST00000187983.8	709	5	4084	-328	3354	0	3prime_fragment	FALSE	canonical	3	241	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106317994	106317252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_106317604_106317819
ENSMUSG00000042210.18_6	chr9	-	1284	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	28	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.893067242576	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGAGAGTGACGTTGTGT	NA	False	NA	-7	True	AATAAA	-20	NA	106324849	106317257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_106317604_106317819_106318110_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
ENSMUSG00000042210.18_9	chr9	-	1214	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	-14	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_2	104.893067242576	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106324833	106317252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322851_106322969_106323034_106324729
ENSMUSG00000042211.8_0	chr18	-	4284	22	FSM	ENSMUSG00000042211.8	ENSMUST00000048688.8	4254	22	-31	1	-31	-1	multi-exon	FALSE	canonical	3	214	junction_21	37.2590368590547	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGTTTCCAGAGCATTT	NA	False	NA	-49	True	AATAAA	-15	NA	62681797	62637226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
ENSMUSG00000042211.8_1	chr18	-	4063	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-31	3	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	64.6469568111548	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCCAGAGCATTTCTAG	NA	False	NA	-45	True	AATAAA	-19	NA	62681797	62637222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62648090_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
ENSMUSG00000042211.8_5	chr18	-	4245	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-33	-1	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_21	58.4071253380051	75	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGTTTCCAGAGCATTT	NA	False	NA	-49	True	AATAAA	-15	NA	62681799	62637226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681723
ENSMUSG00000042211.8_7	chr18	-	4285	22	NIC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-29	-1	combination_of_known_junctions	FALSE	canonical	3	48	junction_8	62.0483682299543	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGTTTCCAGAGCATTT	NA	False	NA	-49	True	AATAAA	-15	NA	62681795	62637226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648619_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
ENSMUSG00000042213.18_0	chr6	+	1145	2	ISM	ENSMUSG00000042213.18	ENSMUST00000220845.2	1163	7	-46	31267	-23	-31267	5prime_fragment	FALSE	canonical	3	17	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTATAGAAGGACAAGAGT	NA	False	NA	NA	False	AATACA	-2	NA	116241159	116251564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_116241274_116250533
ENSMUSG00000042213.18_1	chr6	+	2838	7	NIC	ENSMUSG00000042213.18	novel	3087	9	NA	NA	-8	-2	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	5.31245915016974	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTATGACTTTATTTGAT	NA	False	NA	NA	False	AATAAA	-10	NA	116241174	116307257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_116241274_116250533_116250834_116282577_116282723_116290805_116291979_116292548_116292604_116305167_116305286_116306309
ENSMUSG00000042213.18_2	chr6	+	3162	10	FSM	ENSMUSG00000042213.18	ENSMUST00000036503.14	3123	10	-42	3	-1	-2	multi-exon	FALSE	canonical	2	5	junction_4	4.89393678789894	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTATGACTTTATTTGAT	NA	False	NA	NA	False	AATAAA	-10	NA	116241181	116307257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_116241274_116250533_116250834_116261700_116261777_116262814_116262883_116264942_116265130_116282577_116282723_116290805_116291979_116292548_116292604_116305167_116305286_116306309
ENSMUSG00000042213.18_4	chr6	+	3088	9	FSM	ENSMUSG00000042213.18	ENSMUST00000222819.2	3087	9	-7	6	-7	-6	multi-exon	FALSE	canonical	1	1	junction_2	6.0917464655056	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCACTATGACTTTATT	NA	False	NA	NA	False	AATAAA	-6	NA	116241175	116307253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_116241274_116250533_116250834_116262814_116262883_116264942_116265130_116282577_116282723_116290805_116291979_116292548_116292604_116305167_116305286_116306309
ENSMUSG00000042213.18_7	chr6	+	858	4	ISM	ENSMUSG00000042213.18	ENSMUST00000036503.14	3123	10	9318	41896	2	-17467	internal_fragment	FALSE	canonical	2	5	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAATAGTTTGTTTCCA	NA	False	NA	NA	False	TATAAA	-31	NA	116250541	116265364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_116250834_116261700_116261777_116262814_116262883_116264942
ENSMUSG00000042213.18_8	chr6	+	1916	4	ISM	ENSMUSG00000042213.18	ENSMUST00000222494.2	2790	7	47690	3	-846	-3	3prime_fragment	FALSE	canonical	3	9	junction_3	2.16024689946929	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTATGACTTTATTTGA	4615	False	NA	NA	False	AATAAA	-9	NA	116291182	116307256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_116291979_116292548_116292604_116305167_116305286_116306309
ENSMUSG00000042215.9_0	chr1	-	1761	4	NNC	ENSMUSG00000042215.9	novel	1860	3	NA	NA	-1	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	21.2968437932844	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCTAGCATTGGCCATT	NA	False	NA	-7	True	NA	NA	NA	33796823	33784566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_33785227_33785270_33786098_33787297_33787408_33796659
ENSMUSG00000042215.9_1	chr1	-	1792	3	FSM	ENSMUSG00000042215.9	ENSMUST00000044691.9	1860	3	64	4	-4	-4	multi-exon	FALSE	canonical	3	40	junction_1	4.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTCTAGCATTGGCCA	NA	False	NA	-9	True	NA	NA	NA	33796812	33784568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_33786098_33787297_33787408_33796659
ENSMUSG00000042215.9_5	chr1	-	1675	2	FSM	ENSMUSG00000042215.9	ENSMUST00000187602.2	378	2	18	-1315	4	-3	multi-exon	FALSE	canonical	1	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTTCTAGCATTGGCCAT	NA	False	NA	-8	True	NA	NA	NA	33796804	33784567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_33786098_33796659
ENSMUSG00000042216.14_1	chr5	-	2729	7	ISM	ENSMUSG00000042216.14	ENSMUST00000057209.12	4339	16	17075	-3	15810	3	3prime_fragment	FALSE	canonical	3	35	junction_5	5.8309518948453	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATAACCGTGGGTCTGGTT	1696	False	NA	-6	True	AATATA	-13	NA	113411392	113391091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114
ENSMUSG00000042216.14_19	chr5	-	1489	9	ISM	ENSMUSG00000042216.14	ENSMUST00000147856.8	3012	13	14	8205	0	-5	5prime_fragment	FALSE	canonical	3	54	junction_1	14.2280532751322	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCAGTTGCTGTCTCCTTG	NA	False	NA	NA	False	AGTAAA	-12	NA	113428453	113413544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
ENSMUSG00000042216.14_2	chr5	-	4323	16	FSM	ENSMUSG00000042216.14	ENSMUST00000057209.12	4339	16	14	2	0	-2	multi-exon	FALSE	canonical	3	35	junction_5	17.3674024156368	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACATAACCGTGGGTC	NA	False	NA	-11	True	AATATA	-8	NA	113428453	113391096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
ENSMUSG00000042216.14_23	chr5	-	1098	5	FSM	ENSMUSG00000042216.14	ENSMUST00000112324.2	1102	5	0	4	0	-4	multi-exon	FALSE	canonical	3	70	junction_3	10.6389614154766	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAGGAGAGTGGTGTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	113428453	113421821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
ENSMUSG00000042216.14_4	chr5	-	4367	17	ISM	ENSMUSG00000042216.14	ENSMUST00000048112.13	5161	25	27958	11	64	-2	3prime_fragment	FALSE	canonical	3	16	junction_16	19.4284544869117	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACATAACCGTGGGTC	NA	False	NA	-11	True	AATATA	-8	NA	113430694	113391096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113430457
ENSMUSG00000042216.14_5	chr5	-	4170	17	NNC	ENSMUSG00000042216.14	novel	4339	16	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_16	19.3083531146496	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATAACCGTGGGTCTG	NA	False	NA	-9	True	AATATA	-10	NA	113428454	113391094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113428416
ENSMUSG00000042216.14_6	chr5	-	5116	25	FSM	ENSMUSG00000042216.14	ENSMUST00000048112.13	5161	25	34	11	-13	-2	multi-exon	FALSE	canonical	3	12	junction_24	23.4519307425968	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACATAACCGTGGGTC	NA	False	NA	-11	True	AATATA	-8	NA	113458618	113391096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113430457_113430583_113432845_113432978_113433144_113433291_113433492_113433561_113434640_113434794_113435090_113435254_113436689_113436766_113458413_113458458_113458539
ENSMUSG00000042216.14_7	chr5	-	1653	1	ISM	ENSMUSG00000042216.14	ENSMUST00000048112.13	5161	25	65905	9	34455	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATAACCGTGGGTCTG	NA	False	NA	-9	True	AATATA	-10	NA	113392747	113391094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113391100_113392700
ENSMUSG00000042225.4_0	chrX	-	3086	1	ISM	ENSMUSG00000042225.4	ENSMUST00000041317.3	5437	6	112488	9	112488	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGAATCTTTGTTTTA	NA	False	NA	NA	False	AATAAA	-6	NA	141637236	141634150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_141634200_141637200
ENSMUSG00000042225.4_1	chrX	-	5424	6	FSM	ENSMUSG00000042225.4	ENSMUST00000041317.3	5437	6	4	9	4	-9	multi-exon	FALSE	canonical	3	79	junction_1	6.04648658313239	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGAATCTTTGTTTTA	NA	False	NA	NA	False	AATAAA	-6	NA	141749720	141634150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_141638644_141640471_141640569_141641876_141641968_141661105_141661221_141695168_141695280_141749203
ENSMUSG00000042228.15_1	chr4	+	2916	13	FSM	ENSMUSG00000042228.15	ENSMUST00000041377.13	3463	13	9	538	-3	-537	multi-exon	FALSE	canonical	3	29	junction_2	7.08823359911026	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATTTTTGTCTTGTGTAT	2	True	NA	18	True	AATACA	-15	NA	3678123	3791075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_3678365_3738724_3738862_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
ENSMUSG00000042228.15_2	chr4	+	2861	13	FSM	ENSMUSG00000042228.15	ENSMUST00000103010.4	3387	13	-11	537	1	-537	multi-exon	FALSE	canonical	3	9	junction_2	11.3023473471468	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATTTTTGTCTTGTGTAT	-6	True	NA	18	True	AATACA	-15	NA	3678115	3791075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_3678365_3738724_3738799_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
ENSMUSG00000042228.15_4	chr4	+	2878	12	NIC	ENSMUSG00000042228.15	novel	3463	13	NA	NA	1	-537	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	13.7696516217777	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATTTTTGTCTTGTGTAT	-6	True	NA	18	True	AATACA	-15	NA	3678115	3791075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_3678365_3738724_3738862_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
ENSMUSG00000042229.10_0	chr1	+	1970	2	FSM	ENSMUSG00000042229.10	ENSMUST00000047978.9	2861	2	-1	892	-1	-892	multi-exon	FALSE	canonical	3	479	junction_1	0	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTTGTCATCTGTTTTC	6637	False	NA	NA	False	NA	NA	NA	134422384	134435620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_134422548_134433813
ENSMUSG00000042229.10_10	chr1	+	1096	1	ISM	ENSMUSG00000042229.10	ENSMUST00000047978.9	2861	2	12139	892	12139	-892	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTTGTCATCTGTTTTC	2321	False	NA	NA	False	NA	NA	NA	134434524	134435620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_134434500_134435600
ENSMUSG00000042246.6_0	chr7	-	4499	16	FSM	ENSMUSG00000042246.6	ENSMUST00000044195.6	4546	16	40	7	-10	-7	multi-exon	FALSE	canonical	3	106	junction_8	12.8571640211466	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATATATGTGTTGGGTG	4184	False	NA	-9	True	AATAAA	-11	NA	118183919	118135070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_118137441_118138637_118138717_118141108_118141265_118142521_118142653_118144824_118145012_118146539_118146638_118146826_118146945_118149157_118149316_118150358_118150533_118151920_118152069_118155045_118155192_118158078_118158162_118160213_118160382_118163439_118163589_118165407_118165649_118183826
ENSMUSG00000042246.6_3	chr7	-	4492	16	NNC	ENSMUSG00000042246.6	novel	4546	16	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	31.5472132947851	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATATGTGTTGGGTGCGTG	4178	False	NA	-5	True	AATAAA	-15	NA	118183925	118135066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_118137441_118138637_118138717_118141108_118141248_118142521_118142653_118144824_118145012_118146539_118146638_118146826_118146945_118149157_118149316_118150358_118150533_118151920_118152069_118155045_118155192_118158078_118158162_118160213_118160382_118163439_118163589_118165407_118165649_118183826
ENSMUSG00000042246.6_8	chr7	-	1461	1	ISM	ENSMUSG00000042246.6	ENSMUST00000044195.6	4546	16	47428	7	29319	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATATATGTGTTGGGTG	2673	False	NA	-9	True	AATAAA	-11	NA	118136531	118135070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_118135100_118136500
ENSMUSG00000042249.12_1	chr5	-	6532	21	FSM	ENSMUSG00000042249.12	ENSMUST00000065167.9	6533	21	-6	7	-6	-7	multi-exon	FALSE	canonical	3	54	junction_7	10.5322124931089	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGCAGTGGCTTGAGGC	533	False	NA	-11	True	AATAAA	-11	NA	113163386	113058354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_113062941_113063915_113064030_113066691_113066829_113067873_113068037_113071814_113071911_113073261_113073329_113076521_113076623_113077538_113077606_113085574_113085683_113089498_113089594_113092783_113092915_113094452_113094532_113101691_113101792_113103029_113103122_113105180_113105233_113109452_113109515_113114777_113114853_113117033_113117136_113121372_113121447_113133630_113133708_113163232
ENSMUSG00000042249.12_13	chr5	-	4307	20	NIC	ENSMUSG00000042249.12	novel	6533	21	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	18.5694772345519	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTTTATTATTTATTT	540	False	NA	-9	True	ATTAAA	-17	NA	113163379	113060464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_113062941_113063915_113064030_113066691_113066829_113067873_113068037_113071814_113071911_113073261_113073329_113076521_113076623_113077538_113077606_113089498_113089594_113092783_113092915_113094452_113094532_113101691_113101792_113103029_113103122_113105180_113105233_113109452_113109515_113114777_113114853_113117033_113117136_113121372_113121447_113133630_113133708_113163232
ENSMUSG00000042249.12_4	chr5	-	3010	1	ISM	ENSMUSG00000042249.12	ENSMUST00000065167.9	6533	21	102017	6	10878	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGCAGTGGCTTGAGGCT	8395	False	NA	-10	True	AATAAA	-12	NA	113061363	113058353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113058400_113061400
ENSMUSG00000042249.12_5	chr5	-	6567	21	FSM	ENSMUSG00000042249.12	ENSMUST00000200332.5	4455	21	1	-2113	1	-4	multi-exon	FALSE	canonical	1	4	junction_18	18.223885425452	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGTGGCTTGAGGCTGA	540	False	NA	-8	True	AATAAA	-14	NA	113163379	113058351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_113062941_113063915_113064030_113066691_113066829_113067873_113068037_113071814_113071911_113073261_113073329_113076521_113076623_113077538_113077606_113085574_113085683_113089498_113089594_113092783_113092915_113094452_113094532_113101691_113101792_113103029_113103122_113105180_113105233_113109452_113109515_113114777_113114853_113117033_113117175_113121372_113121447_113133630_113133708_113163232
ENSMUSG00000042251.13_1	chr1	+	3530	13	FSM	ENSMUSG00000042251.13	ENSMUST00000112393.9	6900	13	21	3349	4	1736	multi-exon	FALSE	canonical	3	56	junction_3	6.31741420378799	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGTGGTATTGTGTTCT	NA	False	NA	1	True	AATAAA	-14	NA	131725139	131745850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_131725325_131726333_131726421_131728831_131729065_131729463_131729551_131730038_131730173_131730457_131730578_131731789_131731866_131732324_131732387_131732630_131732710_131734636_131734709_131739772_131739942_131741628_131741729_131743724
ENSMUSG00000042251.13_5	chr1	+	3503	13	NNC	ENSMUSG00000042251.13	novel	6900	13	NA	NA	3	1737	intron_retention	FALSE	canonical	3	7	junction_3	17.7153417503963	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGGTATTGTGTTCTT	NA	False	NA	2	True	AATAAA	-15	NA	131725138	131745851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_131725325_131726333_131726421_131728831_131729036_131729463_131729551_131730038_131730173_131730457_131730578_131731789_131731866_131732324_131732387_131732630_131732710_131734636_131734709_131739772_131739942_131741628_131741729_131743724
ENSMUSG00000042258.14_0	chr13	-	2523	6	FSM	ENSMUSG00000042258.14	ENSMUST00000036060.13	2516	6	-13	6	-13	-6	multi-exon	FALSE	canonical	1	2	junction_1	0.4	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAATTAAATAAACGCAATG	NA	False	NA	NA	False	AATAAA	-13	NA	116446238	116434822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_116436133_116438146_116438315_116439581_116439869_116441753_116442014_116444809_116445000_116445930
ENSMUSG00000042262.6_1	chr9	+	1966	2	FSM	ENSMUSG00000111546.2_ENSMUSG00000042262.6	ENSMUST00000048777.4	1175	2	2	-793	2	793	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATGGTAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	119921181	119924765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119921255_119922872
ENSMUSG00000042271.14_0	chrX	+	2526	5	FSM	ENSMUSG00000042271.14	ENSMUST00000112916.9	2532	5	2	4	2	-4	multi-exon	FALSE	canonical	3	188	junction_1	39.4865483424419	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTCTCAAGTCTTT	NA	False	NA	7	True	AATAAA	-18	NA	141009767	141022684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_141009928_141011286_141011378_141012519_141012607_141019779_141019925_141020641
ENSMUSG00000042271.14_4	chrX	+	2451	5	FSM	ENSMUSG00000042271.14	ENSMUST00000042329.12	2447	5	-8	4	-8	-4	multi-exon	FALSE	canonical	3	12	junction_1	115.070358911407	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTCTCAAGTCTTT	NA	False	NA	7	True	AATAAA	-18	NA	141010924	141022684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_141011010_141011286_141011378_141012519_141012607_141019779_141019925_141020641
ENSMUSG00000042271.14_5	chrX	+	2442	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112914.8	2484	4	38	4	-12	-4	multi-exon	FALSE	canonical	3	263	junction_3	9.93310961716756	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTCTCAAGTCTTT	NA	False	NA	7	True	AATAAA	-18	NA	141011210	141022684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_141011378_141012519_141012607_141019779_141019925_141020641
ENSMUSG00000042271.14_9	chrX	+	1868	1	ISM	ENSMUSG00000042271.14	ENSMUST00000112916.9	2532	5	11051	4	9118	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTCTCAAGTCTTT	NA	False	NA	7	True	AATAAA	-18	NA	141020816	141022684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_141020800_141022700
ENSMUSG00000042272.18_1	chr2	-	3950	1	ISM	ENSMUSG00000042272.18	ENSMUST00000102660.8	8990	18	81469	10	15128	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATCTAGGGGGAATTT	NA	False	NA	-20	True	AATAAA	-9	NA	77014643	77010693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_77010700_77014600
ENSMUSG00000042272.18_2	chr2	-	3390	18	FSM	ENSMUSG00000042272.18	ENSMUST00000102659.2	2720	18	-202	-468	-202	468	multi-exon	FALSE	canonical	3	86	junction_17	13.2907335619941	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATGGTAATGCTTTTA	NA	False	NA	NA	False	AATAAA	-8	NA	77111138	77016430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_77017605_77018843_77018966_77021304_77021497_77022042_77022166_77022842_77022925_77027166_77027327_77028632_77028748_77029209_77029405_77036549_77036673_77042703_77042916_77045405_77045462_77047266_77047365_77048432_77048547_77061007_77061122_77064992_77065084_77071956_77072066_77075360_77075431_77110898
ENSMUSG00000042272.18_4	chr2	-	3473	19	NNC	ENSMUSG00000042272.18	novel	8990	18	NA	NA	-193	470	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_18	32.5521898146407	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGTAATGCTTTTATG	NA	False	NA	NA	False	AATAAA	-10	NA	77111129	77016428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_77017605_77018843_77018966_77021304_77021497_77022042_77022166_77022842_77022925_77027166_77027327_77028632_77028748_77029209_77029405_77036549_77036673_77042703_77042916_77045405_77045462_77047266_77047365_77048432_77048547_77061007_77061122_77064992_77065084_77071956_77072066_77075360_77075431_77096019_77096110_77110898
ENSMUSG00000042275.10_0	chr13	-	1598	2	FSM	ENSMUSG00000042275.10	ENSMUST00000109226.5	1600	2	-1	3	-1	-3	multi-exon	FALSE	canonical	3	85	junction_1	0	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTTTTCTAGTTCGAGT	NA	False	NA	-4	True	AATAAA	-19	NA	115226723	115224893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_115225498_115225729
ENSMUSG00000042284.11_5	chr13	-	5318	29	FSM	ENSMUSG00000042284.11	ENSMUST00000061673.9	10967	29	1	5648	1	-5648	multi-exon	FALSE	canonical	0	0	junction_1	0.920292766194652	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACTGCTGTAAAATGTG	NA	False	NA	NA	False	AATGAA	-26	NA	115238499	115095279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_115096671_115102133_115102251_115103051_115103145_115104739_115104845_115104992_115105098_115107014_115107129_115110628_115110732_115112133_115112224_115114135_115114213_115117308_115117390_115119267_115119478_115121607_115121719_115122665_115122803_115124138_115124306_115126595_115126727_115128802_115129061_115130329_115130474_115133456_115133600_115138074_115138220_115138785_115138860_115143439_115143606_115148695_115148847_115152647_115152797_115166571_115166700_115167418_115167531_115167640_115167730_115171808_115171922_115185818_115185940_115238006
ENSMUSG00000042289.12_0	chr7	+	2266	5	FSM	ENSMUSG00000042289.12	ENSMUST00000144748.8	2286	5	16	4	6	-4	multi-exon	FALSE	canonical	3	82	junction_2	5.22015325445528	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCTTGTCTACCTTTTA	1900	False	NA	10	True	AATAAA	-11	NA	127399791	127402970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401286_127401407
ENSMUSG00000042289.12_1	chr7	+	1813	7	FSM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	11	4	1	-4	multi-exon	FALSE	canonical	3	65	junction_6	10.2794292967395	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCTTGTCTACCTTTTA	1895	False	NA	10	True	AATAAA	-11	NA	127399786	127402970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
ENSMUSG00000042289.12_11	chr7	+	1836	6	FSM	ENSMUSG00000042289.12	ENSMUST00000132702.8	1899	6	59	4	5	-4	multi-exon	FALSE	canonical	3	65	junction_5	11.2178429299041	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCTTGTCTACCTTTTA	1943	False	NA	10	True	AATAAA	-11	NA	127399834	127402970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401286_127401407_127401571_127401957
ENSMUSG00000042289.12_4	chr7	+	2204	6	ISM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	7	4	-3	-4	intron_retention	TRUE	canonical	3	82	junction_2	5.54977477020464	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCTTGTCTACCTTTTA	1891	False	NA	10	True	AATAAA	-11	NA	127399782	127402970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407
ENSMUSG00000042289.12_5	chr7	+	1764	7	NIC	ENSMUSG00000042289.12	novel	1828	7	NA	NA	-2	-4	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	28.5389597256491	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCTTGTCTACCTTTTA	1892	False	NA	10	True	AATAAA	-11	NA	127399783	127402970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127399887_127400298_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
ENSMUSG00000042289.12_7	chr7	+	2824	2	ISM	ENSMUSG00000042289.12	ENSMUST00000106272.8	1725	7	1	4	1	-4	intron_retention	FALSE	canonical	3	91	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCTTGTCTACCTTTTA	1895	False	NA	10	True	AATAAA	-11	NA	127399786	127402970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127399887_127400246
ENSMUSG00000042292.19_1	chr15	-	4332	14	FSM	ENSMUSG00000042292.19	ENSMUST00000239114.2	4366	14	22	12	-2	-2	multi-exon	FALSE	canonical	3	46	junction_4	7.74138192332869	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGACTTGCCAGTCTGTTG	NA	False	NA	-15	True	AATAAA	-9	NA	81074936	80896493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_80898004_80899549_80899611_80899959_80900113_80900431_80901428_80902151_80902321_80902414_80902681_80904365_80904516_80904953_80905130_80906597_80906760_80907742_80907819_80910862_80910919_80929489_80929556_81001591_81001854_81074707
ENSMUSG00000042292.19_16	chr15	-	2133	4	FSM	ENSMUSG00000042292.19	ENSMUST00000123243.8	849	4	-26	-1258	3	1258	multi-exon	FALSE	canonical	3	50	junction_1	7.40870359029762	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81074955	80909361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_80910919_80929489_80929556_81001591_81001854_81074707
ENSMUSG00000042292.19_2	chr15	-	4027	13	ISM	ENSMUSG00000042292.19	ENSMUST00000134469.9	4392	15	73161	8	-12489	2	3prime_fragment	FALSE	canonical	3	46	junction_4	7.52172778614654	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCAGTCTGTTGTATT	NA	False	NA	-11	True	AATAAA	-13	NA	81001773	80896489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_80898004_80899549_80899611_80899959_80900113_80900431_80901428_80902151_80902321_80902414_80902681_80904365_80904516_80904953_80905130_80906597_80906760_80907742_80907819_80910862_80910919_80929489_80929556_81001591
ENSMUSG00000042293.9_0	chr9	+	519	1	FSM	ENSMUSG00000042293.9	ENSMUST00000048824.9	531	1	0	12	0	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAAAAATCATGTCTTGG	2783	False	NA	2	True	NA	NA	NA	48406741	48407260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_48406700_48407300
ENSMUSG00000042298.19_0	chr11	+	2255	10	FSM	ENSMUSG00000042298.19	ENSMUST00000050646.13	3410	10	-25	1180	-14	0	multi-exon	FALSE	canonical	3	145	junction_2	27.2192742167915	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTGTATGGATTCTAAT	NA	False	NA	16	True	AATAAA	-12	NA	62172284	62206072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62172520_62172610_62172715_62174422_62174534_62174956_62174996_62175828_62175886_62176649_62176712_62182949_62183045_62199867_62200020_62203841_62204005_62204835
ENSMUSG00000042298.19_2	chr11	+	3970	9	NIC	ENSMUSG00000042298.19	novel	3410	10	NA	NA	-23	-2	intron_retention	FALSE	canonical	3	154	junction_3	25.45308183698	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCAATTGTATGGATTCTA	NA	False	NA	14	True	AATAAA	-10	NA	62172275	62206070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_62172520_62172610_62174534_62174956_62174996_62175828_62175886_62176649_62176712_62182949_62183045_62199867_62200020_62203841_62204005_62204835
ENSMUSG00000042298.19_26	chr11	+	124	1	ISM	ENSMUSG00000042298.19	ENSMUST00000154976.2	961	4	19279	7	19279	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62219146	62219270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_62219100_62219300
ENSMUSG00000042298.19_3	chr11	+	2213	9	FSM	ENSMUSG00000042298.19	ENSMUST00000101075.11	2193	9	-18	-2	-9	2	multi-exon	FALSE	canonical	3	16	junction_3	62.3493183603478	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGTATGGATTCTAATAA	NA	False	NA	18	True	AATAAA	-14	NA	62172289	62206074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62172520_62172610_62172715_62174422_62174534_62175828_62175886_62176649_62176712_62182949_62183045_62199867_62200020_62203841_62204005_62204835
ENSMUSG00000042298.19_9	chr11	+	3846	8	NIC	ENSMUSG00000042298.19	novel	3410	10	NA	NA	-3	-2	intron_retention	FALSE	canonical	2	6	junction_5	64.9857127155105	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCAATTGTATGGATTCTA	NA	False	NA	14	True	AATAAA	-10	NA	62172304	62206070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_62172520_62172610_62174534_62174956_62174996_62175828_62175886_62176649_62176712_62199867_62200020_62203841_62204005_62204835
ENSMUSG00000042302.15_1	chr11	-	2328	11	NIC	ENSMUSG00000042302.15	novel	4821	24	NA	NA	75875	-1	combination_of_known_splicesites	FALSE	canonical	3	16	junction_9	8.06783738061198	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACCCTGCTGCAATTTAT	2493	False	NA	-4	True	AATAAA	-20	NA	22045535	21955828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_21956872_21957082_21957198_21963483_21963558_21964854_21964955_22003431_22003556_22006529_22006628_22006782_22006922_22009136_22009262_22018358_22018507_22039524_22039669_22045317
ENSMUSG00000042302.15_12	chr11	-	4670	23	NNC	ENSMUSG00000042302.15	novel	4971	25	NA	NA	-229	-5	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	6.6296666084233	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTAAACCCTGCTGCAAT	9663	False	NA	-8	True	AATAAA	-16	NA	22237024	21955832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_21956872_21957082_21957198_21963483_21963558_21964854_21964955_22003431_22003556_22006520_22006628_22006782_22006922_22009136_22009262_22018358_22018507_22039524_22039669_22045317_22046200_22050421_22050471_22051051_22051231_22087837_22088058_22096462_22096626_22101066_22101190_22119034_22119175_22122824_22123007_22182001_22182056_22189142_22189239_22197969_22198028_22235487_22235875_22237002
ENSMUSG00000042302.15_2	chr11	-	5009	23	NIC	ENSMUSG00000042302.15	novel	5046	25	NA	NA	-176	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_15	8.44733318962434	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTGCTGCAATTTATT	9716	False	NA	-3	True	AATAAA	-21	NA	22236971	21955827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_21956872_21957082_21957198_21963483_21963558_21964854_21964955_22003431_22003556_22006529_22006628_22006782_22006922_22009136_22009262_22018358_22018507_22039524_22039669_22045317_22046200_22050421_22050471_22051051_22051231_22087837_22088058_22096462_22096701_22101066_22101190_22119034_22119175_22122824_22123007_22182001_22182056_22189142_22189239_22197969_22198028_22235487_22235875_22236681
ENSMUSG00000042302.15_3	chr11	-	4663	23	NNC	ENSMUSG00000042302.15	novel	4971	25	NA	NA	-226	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	6.15250402560811	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTGCTGCAATTTATT	9666	False	NA	-3	True	AATAAA	-21	NA	22237021	21955827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_21956872_21957082_21957198_21963483_21963558_21964854_21964955_22003431_22003556_22006529_22006628_22006782_22006922_22009136_22009262_22018358_22018507_22039524_22039669_22045317_22046200_22050421_22050471_22051051_22051231_22087837_22088058_22096462_22096626_22101066_22101190_22119034_22119175_22122824_22123007_22182001_22182056_22189142_22189239_22197969_22198028_22235487_22235875_22237002
ENSMUSG00000042302.15_7	chr11	-	1291	4	ISM	ENSMUSG00000042302.15	ENSMUST00000045167.11	4821	24	270925	1	156497	-1	3prime_fragment	FALSE	canonical	3	25	junction_3	6.79869268479038	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACCCTGCTGCAATTTAT	NA	False	NA	-4	True	AATAAA	-20	NA	21964913	21955828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_21956872_21957082_21957198_21963483_21963558_21964854
ENSMUSG00000042303.20_1	chr15	+	2739	22	FSM	ENSMUSG00000042303.20	ENSMUST00000139517.9	2997	22	36	222	-19	179	multi-exon	FALSE	canonical	3	124	junction_4	14.7956603308487	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCAAGCCTCCCATCTTT	NA	False	NA	10	True	AATAAA	-10	NA	80862001	80896269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80890607_80890814_80890906_80891015_80891647_80891792_80892051_80892248_80892489_80892636_80892884_80893110_80893424_80893480_80893607_80893736_80893834_80893991_80894141_80894197_80894429_80894480_80894610_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895856
ENSMUSG00000042305.13_0	chr1	-	1762	1	ISM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	14121	0	2447	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	134275596	134273834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_134273800_134275600
ENSMUSG00000042305.13_1	chr1	-	3109	8	FSM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	38	2	0	-2	multi-exon	FALSE	canonical	0	0	junction_2	214.632196074673	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGGCTCAACTTGTGA	NA	False	NA	-11	True	AATAAA	-14	NA	134289679	134273836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUSG00000042305.13_11	chr1	-	3991	8	NIC	ENSMUSG00000042305.13	novel	1689	9	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_2	298.896064114028	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGCTCAACTTGTGAG	NA	False	NA	-10	True	AATAAA	-15	NA	134289679	134273835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_134275933_134277820_134277977_134280092_134280174_134280712_134280876_134282398_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUSG00000042305.13_2	chr1	-	3106	8	NNC	ENSMUSG00000042305.13	novel	1689	9	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	245.748087376036	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGGCTCAACTTGTGA	NA	False	NA	-11	True	AATAAA	-14	NA	134289679	134273836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283452_134288494_134288663_134289271_134289362_134289499
ENSMUSG00000042305.13_3	chr1	-	3836	7	NIC	ENSMUSG00000042305.13	novel	3149	8	NA	NA	5	0	intron_retention	FALSE	canonical	0	0	junction_2	231.68009553405	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	134289686	134273834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUSG00000042305.13_8	chr1	-	3274	9	FSM	ENSMUSG00000042305.13	ENSMUST00000191237.7	1689	9	0	-1585	0	0	multi-exon	FALSE	canonical	0	0	junction_2	283.900923519104	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	134289679	134273834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134280712_134280876_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUSG00000042306.12_0	chr3	+	1657	4	FSM	ENSMUSG00000042306.12	ENSMUST00000167598.6	1059	4	-609	11	-595	0	multi-exon	FALSE	canonical	2	2	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGTAAAATACGTTGTC	NA	False	NA	4	True	AATAAA	-9	NA	90433567	90436133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90434207_90434478_90434601_90435020_90435168_90435384
ENSMUSG00000042308.15_0	chr7	+	5934	19	FSM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	-7	0	-7	0	multi-exon	TRUE	canonical	3	14	junction_7	11.9666460332021	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGCTTGGTCAGTA	NA	False	NA	10	True	ATTAAA	-10	NA	127376553	127399287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127376686_127377284_127377450_127377677_127377774_127379556_127379828_127382800_127382923_127383144_127383375_127384019_127384909_127385052_127385845_127386297_127386475_127386670_127386759_127387368_127387527_127387653_127387742_127390386_127390705_127394814_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
ENSMUSG00000042308.15_5	chr7	+	526	1	ISM	ENSMUSG00000042308.15	ENSMUST00000047075.14	6487	19	22922	5	21015	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGCTTGGTCAGTATC	872	False	NA	12	True	ATTAAA	-12	NA	127398763	127399289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127398800_127399300
ENSMUSG00000042312.11_0	chr3	+	442	3	ISM	ENSMUSG00000042312.11	ENSMUST00000048138.8	715	4	558	7	558	-7	3prime_fragment	FALSE	canonical	3	229	junction_1	83.5	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAGATGCTTATTTAT	NA	False	NA	8	True	AATAAA	-13	NA	90422299	90431881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_90422327_90423156_90423350_90431659
ENSMUSG00000042312.11_3	chr3	+	425	2	ISM	ENSMUSG00000042312.11	ENSMUST00000048138.8	715	4	1403	9	1403	-9	3prime_fragment	FALSE	canonical	3	396	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACACAGATGCTTATTT	NA	False	NA	6	True	AATAAA	-11	NA	90423144	90431879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_90423350_90431659
ENSMUSG00000042312.11_4	chr3	+	1409	3	NNC	ENSMUSG00000042312.11	novel	715	4	NA	NA	-522	-7	intron_retention	FALSE	canonical	3	26	junction_1	185	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAGATGCTTATTTAT	NA	False	NA	8	True	AATAAA	-13	NA	90421219	90431881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_90422327_90423269_90423350_90431659
ENSMUSG00000042312.11_7	chr3	+	161	1	ISM	ENSMUSG00000042312.11	ENSMUST00000048138.8	715	4	9979	7	9979	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAGATGCTTATTTAT	NA	False	NA	8	True	AATAAA	-13	NA	90431720	90431881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_90431700_90431900
ENSMUSG00000042323.18_113	chr14	+	2433	1	ISM	ENSMUSG00000042323.18	ENSMUST00000112095.8	7907	31	100015	7	34949	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGATTTGGATCAGCCA	NA	False	NA	7	True	AATAAA	-14	NA	30841109	30843542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_30841100_30843500
ENSMUSG00000042323.18_14	chr14	+	7874	31	FSM	ENSMUSG00000042323.18	ENSMUST00000112095.8	7907	31	26	7	-6	-7	multi-exon	FALSE	canonical	3	94	junction_27	38.4939244845498	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGATTTGGATCAGCCA	8241	False	NA	7	True	AATAAA	-14	NA	30741120	30843542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30835805_30835962_30838969_30839041_30839156_30839374_30840685
ENSMUSG00000042323.18_17	chr14	+	8038	32	NIC	ENSMUSG00000042323.18	novel	6566	33	NA	NA	-5	-7	combination_of_known_junctions	FALSE	canonical	3	74	junction_27	42.8276316807247	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGATTTGGATCAGCCA	8242	False	NA	7	True	AATAAA	-14	NA	30741121	30843542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30832371_30832537_30835805_30835962_30838969_30839041_30839156_30839374_30840685
ENSMUSG00000042323.18_8	chr14	+	7573	29	NIC	ENSMUSG00000042323.18	novel	7907	31	NA	NA	-1	-7	combination_of_known_splicesites	FALSE	canonical	3	48	junction_1	44.8630569349774	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGATTTGGATCAGCCA	8246	False	NA	7	True	AATAAA	-14	NA	30741125	30843542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_30741251_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30838969_30839041_30839156_30839374_30840685
ENSMUSG00000042323.18_85	chr14	+	5499	14	ISM	ENSMUSG00000042323.18	ENSMUST00000112095.8	7907	31	48354	3	-16712	-3	3prime_fragment	FALSE	canonical	3	94	junction_10	35.9532898808223	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTGGATCAGCCAGGTT	NA	False	NA	11	True	AATAAA	-18	NA	30789448	30843546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30835805_30835962_30838969_30839041_30839156_30839374_30840685
ENSMUSG00000042328.14_0	chr5	+	2804	14	NIC	ENSMUSG00000042328.14	novel	2836	14	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	24.5195248851138	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCTGAGTGATCAGCTAG	NA	False	NA	7	True	AATAAA	-13	NA	112490949	112526278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_112490989_112492406_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
ENSMUSG00000042328.14_21	chr5	+	2996	13	ISM	ENSMUSG00000042328.14	ENSMUST00000035279.4	2836	14	1215	2	1210	-2	3prime_fragment	FALSE	canonical	3	62	junction_9	13.6126983201552	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCTGAGTGATCAGCTAG	NA	False	NA	7	True	AATAAA	-13	NA	112492175	112526278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
ENSMUSG00000042328.14_23	chr5	+	1453	4	ISM	ENSMUSG00000042328.14	ENSMUST00000035279.4	2836	14	26884	11	1234	2	3prime_fragment	FALSE	canonical	3	92	junction_3	10.077477638554	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAAGTGAGTTCTGAGTG	NA	False	NA	-2	True	AATAAA	-4	NA	112517844	112526269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_112518611_112522745_112522879_112523218_112523328_112525824
ENSMUSG00000042328.14_3	chr5	+	2802	14	FSM	ENSMUSG00000042328.14	ENSMUST00000035279.4	2836	14	30	4	25	-4	multi-exon	FALSE	canonical	3	24	junction_1	21.6682900317355	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTCTGAGTGATCAGCT	NA	False	NA	5	True	AATAAA	-11	NA	112490990	112526276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_112491030_112492406_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
ENSMUSG00000042328.14_4	chr5	+	3295	14	NIC	ENSMUSG00000042328.14	novel	3345	14	NA	NA	1	5	combination_of_known_junctions	TRUE	canonical	3	6	junction_1	25.6563543924319	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGAGTTCTGAGTGATC	NA	False	NA	1	True	AATAAA	-7	NA	112490949	112526272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_112490989_112491909_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
ENSMUSG00000042328.14_5	chr5	+	3296	14	FSM	ENSMUSG00000042328.14	ENSMUST00000112359.9	3345	14	42	7	25	6	multi-exon	FALSE	canonical	3	34	junction_1	19.6098031274724	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAGTTCTGAGTGATCA	NA	False	NA	2	True	AATAAA	-8	NA	112490990	112526273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_112491030_112491909_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
ENSMUSG00000042331.14_1	chr11	+	3877	6	NIC	ENSMUSG00000042331.14	novel	2690	6	NA	NA	12	1193	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	7.07106781186548	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTCTGTGGTTTGAATT	NA	False	NA	NA	False	AATAAA	-11	NA	61967896	62030542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_61968063_62008525_62010109_62019025_62019234_62022655_62022730_62023101_62023281_62028875
ENSMUSG00000042331.14_3	chr11	+	3610	13	FSM	ENSMUSG00000042331.14	ENSMUST00000202179.2	6676	13	-26	3092	12	-43	multi-exon	FALSE	canonical	0	0	junction_10	9.09326673973661	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAACAGAAAAACAAACGCA	NA	False	NA	NA	False	AATAAA	-13	NA	61967896	62110747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_61968063_62008525_62010109_62019025_62019234_62022655_62022730_62023101_62023281_62037131_62037278_62038393_62038495_62042695_62042778_62047312_62047467_62052633_62052737_62096209_62096327_62102469_62102530_62110110
ENSMUSG00000042331.14_7	chr11	+	2576	12	ISM	ENSMUSG00000042331.14	ENSMUST00000202179.2	6676	13	41476	3087	41476	-38	3prime_fragment	FALSE	canonical	0	0	junction_9	9.32339100513921	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAACAAACGCAGCTTT	2867	False	NA	NA	False	AATAAA	-18	NA	62009398	62110752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_62010109_62019025_62019234_62022655_62022730_62023101_62023281_62037131_62037278_62038393_62038495_62042695_62042778_62047312_62047467_62052633_62052737_62096209_62096327_62102469_62102530_62110110
ENSMUSG00000042340.7_1	chr7	+	1343	3	FSM	ENSMUSG00000042340.7	ENSMUST00000047393.7	1352	3	1	8	1	-8	multi-exon	FALSE	canonical	3	6	junction_1	5.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACATAGTTGTTCCATGT	NA	False	NA	NA	False	AATAAA	-29	NA	127311908	127317356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127311952_127313096_127313216_127316175
ENSMUSG00000042340.7_3	chr7	+	1348	3	FSM	ENSMUSG00000042340.7	ENSMUST00000206506.2	784	3	8	-572	8	-30	multi-exon	FALSE	canonical	1	4	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAATAAAACTAAACTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	127312123	127317334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127312194_127313096_127313216_127316175
ENSMUSG00000042345.16_1	chr17	+	2980	13	NIC	ENSMUSG00000042345.16	novel	2539	13	NA	NA	0	313	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	6.05300659911163	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACACTTCGCTCAGGTC	NA	False	NA	2	True	CATAAA	-15	NA	31431086	31461377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_31431334_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456969_31458149_31458260_31460214
ENSMUSG00000042345.16_2	chr17	+	2852	13	FSM	ENSMUSG00000042345.16	ENSMUST00000151620.9	2539	13	0	-313	0	313	multi-exon	FALSE	canonical	3	21	junction_1	6.05300659911163	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACACTTCGCTCAGGTC	NA	False	NA	2	True	CATAAA	-15	NA	31431086	31461377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_31431206_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456969_31458149_31458260_31460214
ENSMUSG00000042345.16_9	chr17	+	167	1	ISM	ENSMUSG00000042345.16	ENSMUST00000236745.2	7635	14	36929	1924	9319	-1924	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	31463775	31463942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_31463800_31463900
ENSMUSG00000042348.11_0	chr13	+	3231	7	NNC	ENSMUSG00000042348.11	novel	1966	6	NA	NA	21	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	151.322686850173	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACAGGCGTTTCCTGACT	NA	False	NA	9	True	AATAAA	-9	NA	113931061	114293989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117_114104327_114291239_114291977_114292040_114292963_114293002
ENSMUSG00000042348.11_1	chr13	+	2559	5	FSM	ENSMUSG00000042348.11	ENSMUST00000091201.7	3364	5	21	784	21	677	multi-exon	FALSE	canonical	3	349	junction_1	23.636571240347	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTCTCCCTGCAAGTTC	NA	False	NA	NA	False	AATAAA	-28	NA	113931061	114293213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117_114104327_114291239
ENSMUSG00000042348.11_10	chr13	+	3483	6	FSM	ENSMUSG00000042348.11	ENSMUST00000224858.2	1966	6	-65	-1452	23	-9	multi-exon	FALSE	canonical	3	25	junction_1	177.959995504608	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAACAGGCGTTTCCTGAC	NA	False	NA	8	True	AATAAA	-8	NA	113931063	114293988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_113931233_114037538_114037690_114058782_114058928_114070599_114070660_114104117_114104327_114291239
ENSMUSG00000042349.14_2	chr1	-	1788	12	ISM	ENSMUSG00000042349.14	ENSMUST00000161764.8	2867	21	6582	-1	175	1	3prime_fragment	FALSE	canonical	1	4	junction_11	4.55997680144889	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCAGCTATGGTACCTG	2103	False	NA	NA	False	AATAAA	-20	NA	131198106	131182337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_131183076_131184623_131184696_131184853_131184961_131185637_131185735_131186918_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611_131193688_131197537_131197625_131197754_131197847_131197922
ENSMUSG00000042349.14_3	chr1	-	2652	18	ISM	ENSMUSG00000042349.14	ENSMUST00000161764.8	2867	21	1650	-1	1412	1	3prime_fragment	FALSE	canonical	1	1	junction_15	6.08759587435071	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCAGCTATGGTACCTG	NA	False	NA	NA	False	AATAAA	-20	NA	131203038	131182337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_131183076_131184623_131184696_131184853_131184961_131185637_131185735_131186918_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611_131193688_131197537_131197625_131197754_131197847_131197922_131197988_131198623_131198821_131199499_131199680_131199844_131199956_131201107_131201269_131201377_131201560_131202886
ENSMUSG00000042349.14_4	chr1	-	3055	21	ISM	ENSMUSG00000042349.14	ENSMUST00000062108.10	3251	22	735	5	735	0	3prime_fragment	FALSE	canonical	0	0	junction_18	6.85036495378166	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCAGCTATGGTACCT	NA	False	NA	NA	False	AATAAA	-19	NA	131206609	131182338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_131183076_131184623_131184696_131184853_131184961_131185637_131185735_131186918_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611_131193688_131197537_131197625_131197754_131197847_131197922_131197988_131198623_131198821_131199499_131199680_131199844_131199956_131201107_131201269_131201377_131201560_131202886_131203017_131203443_131203585_131204204_131204316_131206435
ENSMUSG00000042349.14_6	chr1	-	1480	10	ISM	ENSMUSG00000042349.14	ENSMUST00000161764.8	2867	21	7094	1	687	-1	3prime_fragment	FALSE	canonical	3	13	junction_1	2.61524495465329	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGCAGCTATGGTACC	2615	False	NA	NA	False	AATAAA	-18	NA	131197594	131182339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_131183076_131184623_131184696_131184853_131184961_131185637_131185735_131186918_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611_131193688_131197537
ENSMUSG00000042349.14_7	chr1	-	1908	11	NIC	ENSMUSG00000042349.14	novel	2867	21	NA	NA	185	1	intron_retention	FALSE	canonical	1	4	junction_10	4.42718872423573	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCAGCTATGGTACCTG	2113	False	NA	NA	False	AATAAA	-20	NA	131198096	131182337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_131183076_131184623_131184696_131184853_131184961_131185637_131185735_131186918_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611_131193688_131197537_131197847_131197922
ENSMUSG00000042350.14_0	chr12	-	5405	20	FSM	ENSMUSG00000042350.14	ENSMUST00000043169.14	5446	20	34	7	-10	-7	multi-exon	TRUE	canonical	0	0	junction_19	22.9818668733885	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAATAAAGAGCTAAATGA	NA	False	NA	NA	False	AATAAA	-9	NA	85017640	84964930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974074_84974185_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925_84981174_84981343_84981525_84981727_84981898_84986933_84987172_84988504_84988732_84990105_84990167_84997826_84998156_85017402
ENSMUSG00000042350.14_1	chr12	-	3272	8	ISM	ENSMUSG00000042350.14	ENSMUST00000043169.14	5446	20	43516	4	15994	-4	3prime_fragment	FALSE	canonical	3	85	junction_2	11.2122382116278	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGAGCTAAATGAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	84974158	84964927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974074
ENSMUSG00000042350.14_10	chr12	-	3559	11	ISM	ENSMUSG00000042350.14	ENSMUST00000043169.14	5446	20	40486	7	12964	-7	3prime_fragment	FALSE	canonical	3	85	junction_2	10.3658091821141	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAATAAAGAGCTAAATGA	NA	False	NA	NA	False	AATAAA	-9	NA	84977188	84964930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974074_84974185_84974642_84974719_84976891_84977014_84977122
ENSMUSG00000042350.14_13	chr12	-	3810	13	ISM	ENSMUSG00000042350.14	ENSMUST00000043169.14	5446	20	36650	9	9128	-9	3prime_fragment	FALSE	canonical	3	85	junction_2	9.75925486682029	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAATAATAAAGAGCTAAAT	NA	False	NA	NA	False	AATAAA	-7	NA	84981024	84964932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974074_84974185_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925
ENSMUSG00000042350.14_18	chr12	-	5334	20	NIC	ENSMUSG00000042350.14	novel	5446	20	NA	NA	-10	-9	intron_retention	FALSE	canonical	3	7	junction_19	21.533971100504	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAATAATAAAGAGCTAAAT	NA	False	NA	NA	False	AATAAA	-7	NA	85017640	84964932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974074_84974185_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925_84981174_84981343_84981525_84981727_84981898_84986933_84987172_84988504_84988732_84990105_84990167_84997826_84998156_85017471
ENSMUSG00000042350.14_19	chr12	-	1578	1	ISM	ENSMUSG00000042350.14	ENSMUST00000163231.8	5262	19	51090	9	23644	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAATAAAGAGCTAAATGA	4341	False	NA	NA	False	AATAAA	-9	NA	84966508	84964930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84964900_84966500
ENSMUSG00000042350.14_23	chr12	-	2787	5	ISM	ENSMUSG00000042350.14	ENSMUST00000163231.8	5262	19	46789	11	19343	-9	3prime_fragment	FALSE	canonical	3	85	junction_2	8.25757228245687	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAATAATAAAGAGCTAAAT	40	False	NA	NA	False	AATAAA	-7	NA	84970809	84964932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769
ENSMUSG00000042350.14_6	chr12	-	5375	20	NNC	ENSMUSG00000042350.14	novel	5446	20	NA	NA	-10	-7	intron_retention	FALSE	canonical	0	0	junction_19	29.7654729426795	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAATAAAGAGCTAAATGA	NA	False	NA	NA	False	AATAAA	-9	NA	85017640	84964930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974074_84974185_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925_84981174_84981343_84981525_84981727_84981898_84986933_84987172_84988534_84988732_84990105_84990167_84997826_84998156_85017402
ENSMUSG00000042350.14_9	chr12	-	4015	14	ISM	ENSMUSG00000042350.14	ENSMUST00000043169.14	5446	20	36275	9	8753	-9	3prime_fragment	FALSE	canonical	3	85	junction_2	9.37767713255084	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAATAATAAAGAGCTAAAT	NA	False	NA	NA	False	AATAAA	-7	NA	84981399	84964932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974074_84974185_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925_84981174_84981343
ENSMUSG00000042354.8_1	chr14	-	1830	15	FSM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	116	1	8	0	multi-exon	FALSE	canonical	3	775	junction_10	82.9678140200482	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTTATTTA	NA	False	NA	-2	True	AATAAA	-19	NA	30740993	30734390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ENSMUSG00000042354.8_7	chr14	-	1759	15	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-9	0	combination_of_known_junctions	TRUE	canonical	3	108	junction_10	218.114789100808	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTTATTTA	NA	False	NA	-2	True	AATAAA	-19	NA	30740984	30734390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ENSMUSG00000042357.3_0	chr4	-	1311	2	FSM	ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	18	392	18	-392	multi-exon	FALSE	canonical	3	573	junction_1	0	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCAAGGTGTCCTTTGG	422	False	NA	-12	True	AATAAA	-16	NA	127251956	127248993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_127250167_127251818
ENSMUSG00000042357.3_1	chr4	-	1018	1	ISM	ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	1963	392	1963	-392	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCAAGGTGTCCTTTGG	2367	False	NA	-12	True	AATAAA	-16	NA	127250011	127248993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_127249000_127250000
ENSMUSG00000042359.19_0	chr2	+	3331	25	FSM	ENSMUSG00000042359.19	ENSMUST00000111930.9	3853	25	-30	552	-10	-1	multi-exon	FALSE	canonical	2	5	junction_10	10.6640621820309	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTCTTATAGCTACGCG	NA	False	NA	5	True	AATAAA	-16	NA	76236871	76426388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76390529_76390605_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
ENSMUSG00000042359.19_1	chr2	+	1354	2	FSM	ENSMUSG00000042359.19	ENSMUST00000134213.2	422	2	-46	-886	7	422	multi-exon	FALSE	canonical	3	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATTCTTGGTTTTGTCC	NA	False	NA	NA	False	ATTAAA	-23	NA	76236858	76238697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_76237034_76237518
ENSMUSG00000042359.19_14	chr2	+	2162	15	NIC	ENSMUSG00000042359.19	novel	3853	25	NA	NA	-8	2	combination_of_known_splicesites	FALSE	canonical	3	13	junction_10	12.7793280140153	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACGATGTTCTCAGAGTT	NA	False	NA	NA	False	AATAAA	-15	NA	76236873	76410374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76410132
ENSMUSG00000042359.19_2	chr2	+	3428	26	NIC	ENSMUSG00000042359.19	novel	8037	27	NA	NA	-15	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	8.49621092016906	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTCTTATAGCTACGC	NA	False	NA	4	True	AATAAA	-15	NA	76236866	76426387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76390529_76390605_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
ENSMUSG00000042359.19_3	chr2	+	3238	24	NIC	ENSMUSG00000042359.19	novel	3853	25	NA	NA	8	-1	combination_of_known_splicesites	FALSE	canonical	3	13	junction_10	9.67955380246139	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTCTTATAGCTACGCG	NA	False	NA	5	True	AATAAA	-16	NA	76236889	76426388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
ENSMUSG00000042359.19_32	chr2	+	2227	16	NIC	ENSMUSG00000042359.19	novel	3853	25	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	2	5	junction_10	13.7242688532233	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACGATGTTCTCAGAGTT	NA	False	NA	NA	False	AATAAA	-15	NA	76236883	76410374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76390529_76390605_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76410132
ENSMUSG00000042359.19_6	chr2	+	3363	25	NIC	ENSMUSG00000042359.19	novel	8037	27	NA	NA	-15	8	combination_of_known_junctions	FALSE	canonical	3	6	junction_11	10.767427733679	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTACGCGTGGTTTCTG	NA	False	NA	14	True	AATAAA	-25	NA	76236866	76426397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
ENSMUSG00000042359.19_7	chr2	+	2338	17	NIC	ENSMUSG00000042359.19	novel	8037	27	NA	NA	14	2	combination_of_known_junctions	FALSE	canonical	3	17	junction_16	10.9784946030865	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACGATGTTCTCAGAGTT	NA	False	NA	NA	False	AATAAA	-15	NA	76236865	76410374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76390529_76390605_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76410132
ENSMUSG00000042363.15_0	chr11	-	2366	1	ISM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	5111	4	4810	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATAGCTTCTGGGTTATT	NA	False	NA	-7	True	AATAAA	-13	NA	20775945	20773579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_20773600_20775900
ENSMUSG00000042363.15_1	chr11	-	3324	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	32	6	-2	-6	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATAGCTTCTGGGTTA	NA	False	NA	-9	True	AATAAA	-11	NA	20781024	20773581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
ENSMUSG00000042363.15_2	chr11	-	3693	4	FSM	ENSMUSG00000042363.15	ENSMUST00000144441.8	913	4	-12	-2768	-12	-6	multi-exon	FALSE	canonical	3	309	junction_3	21.6384431561566	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATAGCTTCTGGGTTA	NA	False	NA	-9	True	AATAAA	-11	NA	20780767	20773581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275
ENSMUSG00000042364.12_0	chr13	-	1849	1	ISM	ENSMUSG00000042364.12	ENSMUST00000109241.5	4447	2	24531	6	19608	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCATCGCTTGTCTTTTA	NA	False	NA	-6	True	AATAAA	-15	NA	113730569	113728720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_113728700_113730600
ENSMUSG00000042364.12_1	chr13	-	4434	2	FSM	ENSMUSG00000042364.12	ENSMUST00000109241.5	4447	2	7	6	7	0	multi-exon	FALSE	canonical	3	496	junction_1	0	1258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCATCGCTTGTCTTTTA	NA	False	NA	-6	True	AATAAA	-15	NA	113755093	113728720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_113731399_113753337
ENSMUSG00000042367.13_0	chr4	-	1590	2	FSM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	29	4	29	-4	multi-exon	FALSE	canonical	3	984	junction_1	0	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATTCGGTTCTTCCCTCC	NA	False	NA	-9	True	AATAAA	-13	NA	127222925	127219031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_127220565_127222868
ENSMUSG00000042367.13_1	chr4	-	1652	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	222	6	222	-6	multi-exon	FALSE	canonical	3	980	junction_1	0	1143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAATTCGGTTCTTCCCT	NA	False	NA	-11	True	AATAAA	-11	NA	127224415	127219033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_127220565_127224294
ENSMUSG00000042367.13_3	chr4	-	1401	1	ISM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	2520	6	2520	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAATTCGGTTCTTCCCT	NA	False	NA	-11	True	AATAAA	-11	NA	127220434	127219033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_127219000_127220400
ENSMUSG00000042369.9_0	chr2	+	1856	10	FSM	ENSMUSG00000042369.9	ENSMUST00000046389.5	1898	10	35	7	35	-7	multi-exon	FALSE	canonical	3	321	junction_1	22.7991769398766	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAATCATGACTTATTT	NA	False	NA	48	True	AATAAA	-14	NA	76200362	76214105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76213798
ENSMUSG00000042369.9_2	chr2	+	4749	9	ISM	ENSMUSG00000042369.9	ENSMUST00000046389.5	1898	10	35	3	35	-3	intron_retention	FALSE	canonical	3	321	junction_1	18.2054250156375	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCATGACTTATTTATAT	NA	False	NA	52	True	AATAAA	-18	NA	76200362	76214109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708
ENSMUSG00000042372.6_0	chr19	+	2445	3	NIC	ENSMUSG00000042372.6	novel	2391	2	NA	NA	-39	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	6	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTTGGTTGATGTCTTTT	NA	False	NA	15	True	AATAAA	-11	NA	25587625	25601283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_25587719_25587937_25588632_25599625
ENSMUSG00000042372.6_2	chr19	+	2402	2	FSM	ENSMUSG00000042372.6	ENSMUST00000048935.6	2391	2	-13	2	-13	-2	multi-exon	FALSE	canonical	3	24	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTTGGTTGATGTCTTTT	NA	False	NA	15	True	AATAAA	-11	NA	25587887	25601283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_25588632_25599625
ENSMUSG00000042372.6_3	chr19	+	1225	1	ISM	ENSMUSG00000042372.6	ENSMUST00000048935.6	2391	2	12159	1	12159	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTGGTTGATGTCTTTTC	564	False	NA	16	True	AATAAA	-12	NA	25600059	25601284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_25600100_25601300
ENSMUSG00000042377.9_0	chr11	+	2817	5	NNC	ENSMUSG00000042377.9	novel	4778	5	NA	NA	6	-1739	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	7.11951543294907	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACAGTGTCCTGTTGGC	NA	False	NA	NA	False	ATTAAA	-19	NA	61575250	61599038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_61575882_61585935_61586104_61592468_61592594_61593282_61594328_61598190
ENSMUSG00000042377.9_1	chr11	+	3019	5	FSM	ENSMUSG00000042377.9	ENSMUST00000093019.6	4778	5	19	1740	19	-1740	multi-exon	FALSE	canonical	3	16	junction_3	2.38484800354236	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCACAGTGTCCTGTTGG	NA	False	NA	NA	False	ATTAAA	-18	NA	61575263	61599037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_61575882_61585935_61586104_61592468_61592594_61593282_61594544_61598190
ENSMUSG00000042377.9_2	chr11	+	3082	6	NIC	ENSMUSG00000042377.9	novel	4778	5	NA	NA	-2	-1742	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	3.9293765408777	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCCACAGTGTCCTGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	61574914	61599035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_61574995_61575278_61575882_61585935_61586104_61592468_61592594_61593282_61594544_61598190
ENSMUSG00000042377.9_4	chr11	+	1391	1	ISM	ENSMUSG00000042377.9	ENSMUST00000093019.6	4778	5	24132	10	24132	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATCAGAGAGCAGTGTTG	NA	False	NA	NA	False	AATAAA	-18	NA	61599376	61600767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_61599400_61600800
ENSMUSG00000042380.9_0	chr4	+	990	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	29	3	29	-3	multi-exon	FALSE	canonical	3	445	junction_1	0	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGATGGAGTCCTGCTC	NA	False	NA	26	True	ATTAAA	-15	NA	127137605	127141599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_127137692_127140695
ENSMUSG00000042380.9_1	chr4	+	820	1	ISM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	3205	1	3205	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATGGAGTCCTGCTCTC	NA	False	NA	28	True	ATTAAA	-17	NA	127140781	127141601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_127140800_127141600
ENSMUSG00000042386.8_0	chrX	-	3441	2	FSM	ENSMUSG00000042386.8	ENSMUST00000132970.2	1292	2	-1196	-953	-1196	-8	multi-exon	FALSE	canonical	2	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTTGAGTTTGAAAAGGC	1708	False	NA	NA	False	NA	NA	NA	139712797	139709063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_139710457_139710749
ENSMUSG00000042388.15_1	chr4	+	3901	12	FSM	ENSMUSG00000042388.15	ENSMUST00000046659.14	3884	12	-23	6	-23	-6	multi-exon	TRUE	canonical	3	99	junction_1	32.2174943493246	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGAGCCAAATCTCTCCA	NA	False	NA	11	True	AATAAA	-14	NA	127062973	127130809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_127063159_127086867_127086951_127088354_127089507_127093465_127093672_127094056_127094130_127108098_127108313_127108475_127108790_127109090_127109177_127127327_127127813_127128760_127128853_127129177_127129322_127129942
ENSMUSG00000042388.15_21	chr4	+	3198	10	ISM	ENSMUSG00000042388.15	ENSMUST00000106094.9	4207	12	22117	6	384	-6	3prime_fragment	FALSE	canonical	3	109	junction_1	23.6992472662668	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGAGCCAAATCTCTCCA	NA	False	NA	11	True	AATAAA	-14	NA	127088789	127130809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_127089507_127093465_127093672_127094056_127094130_127108098_127108313_127108475_127108790_127109090_127109177_127127327_127127813_127128760_127128853_127129177_127129322_127129942
ENSMUSG00000042388.15_23	chr4	+	2536	9	ISM	ENSMUSG00000042388.15	ENSMUST00000106094.9	4207	12	26738	6	-3688	-6	3prime_fragment	FALSE	canonical	3	155	junction_4	13.1600721882519	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGAGCCAAATCTCTCCA	NA	False	NA	11	True	AATAAA	-14	NA	127093410	127130809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_127093672_127094056_127094130_127108098_127108313_127108475_127108790_127109090_127109177_127127327_127127813_127128760_127128853_127129177_127129322_127129942
ENSMUSG00000042388.15_24	chr4	+	2371	8	ISM	ENSMUSG00000042388.15	ENSMUST00000106094.9	4207	12	27288	6	-3138	-6	3prime_fragment	FALSE	canonical	3	155	junction_3	14.059639731791	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGAGCCAAATCTCTCCA	NA	False	NA	11	True	AATAAA	-14	NA	127093960	127130809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_127094130_127108098_127108313_127108475_127108790_127109090_127109177_127127327_127127813_127128760_127128853_127129177_127129322_127129942
ENSMUSG00000042388.15_34	chr4	+	1907	6	ISM	ENSMUSG00000042388.15	ENSMUST00000106094.9	4207	12	41884	6	11458	-6	3prime_fragment	FALSE	canonical	3	155	junction_1	12.9553077925613	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGAGCCAAATCTCTCCA	NA	False	NA	11	True	AATAAA	-14	NA	127108556	127130809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_127108790_127109090_127109177_127127327_127127813_127128760_127128853_127129177_127129322_127129942
ENSMUSG00000042388.15_4	chr4	+	3868	12	NIC	ENSMUSG00000042388.15	novel	3884	12	NA	NA	-23	-6	combination_of_known_junctions	FALSE	canonical	3	28	junction_10	47.2956238256549	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGAGCCAAATCTCTCCA	NA	False	NA	11	True	AATAAA	-14	NA	127062973	127130809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_127063159_127086867_127086951_127088354_127089507_127093465_127093672_127094056_127094130_127108098_127108313_127108475_127108790_127109090_127109177_127127327_127127813_127128760_127128853_127129210_127129322_127129942
ENSMUSG00000042389.14_0	chr6	+	1777	12	FSM	ENSMUSG00000042389.14	ENSMUST00000040234.9	2106	12	35	294	-3	-294	multi-exon	FALSE	canonical	3	175	junction_1	38.6343314973604	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGTTTTTGAGAGAATAAA	NA	False	NA	12	True	AATAAA	-12	NA	115521659	115555295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
ENSMUSG00000042389.14_12	chr6	+	1664	10	NIC	ENSMUSG00000042389.14	novel	2106	12	NA	NA	3117	-294	combination_of_known_junctions	FALSE	canonical	3	50	junction_1	75.0629365562289	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGTTTTTGAGAGAATAAA	2678	False	NA	12	True	AATAAA	-12	NA	115524783	115555295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_115524992_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
ENSMUSG00000042389.14_13	chr6	+	1746	11	ISM	ENSMUSG00000042389.14	ENSMUST00000040234.9	2106	12	3159	294	3117	-294	3prime_fragment	FALSE	canonical	3	236	junction_7	26.4529771481397	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGTTTTTGAGAGAATAAA	2678	False	NA	12	True	AATAAA	-12	NA	115524783	115555295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_115524992_115526873_115526956_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
ENSMUSG00000042389.14_2	chr6	+	1695	11	NIC	ENSMUSG00000042389.14	novel	2106	12	NA	NA	-3	-294	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	74.5318723768563	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGTTTTTGAGAGAATAAA	NA	False	NA	12	True	AATAAA	-12	NA	115521659	115555295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_115521690_115524782_115524992_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
ENSMUSG00000042390.10_0	chr3	+	5617	11	FSM	ENSMUSG00000042390.10	ENSMUST00000199754.5	7438	11	24	1797	18	-1797	multi-exon	FALSE	canonical	3	14	junction_1	3.87814388593306	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTGTGTTATGTCATTT	NA	False	NA	NA	False	NA	NA	NA	90200508	90268917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90200732_90248962_90249302_90255873_90256004_90256661_90256794_90257693_90257826_90258710_90258882_90259120_90259437_90261614_90261818_90262981_90263093_90263437_90263556_90265175
ENSMUSG00000042390.10_11	chr3	+	3928	3	ISM	ENSMUSG00000042390.10	ENSMUST00000049382.6	1906	10	14042	-3468	4278	-1819	3prime_fragment	FALSE	canonical	3	23	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCCTAGCCATGGATATT	2034	False	NA	NA	False	NA	NA	NA	90263002	90268895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_90263093_90263437_90263556_90265175
ENSMUSG00000042390.10_13	chr3	+	3028	1	ISM	ENSMUSG00000042390.10	ENSMUST00000199754.5	7438	11	65867	1335	7627	-1335	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAACAAAACCCAGTGTC	390	False	NA	NA	False	AATATA	-4	NA	90266351	90269379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_90266400_90269400
ENSMUSG00000042390.10_2	chr3	+	5651	12	NIC	ENSMUSG00000042390.10	novel	7438	11	NA	NA	26	-1808	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	8.02681456532513	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGATATTGTGAAACTGTG	NA	False	NA	NA	False	NA	NA	NA	90200516	90268906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_90200732_90231348_90231402_90248962_90249302_90255873_90256004_90256661_90256794_90257693_90257826_90258710_90258882_90259120_90259437_90261614_90261818_90262981_90263093_90263437_90263556_90265175
ENSMUSG00000042390.10_5	chr3	+	5186	10	FSM	ENSMUSG00000042390.10	ENSMUST00000049382.6	1906	10	209	-3489	207	-1798	multi-exon	FALSE	canonical	3	14	junction_2	3.62092683040007	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACTGTGTTATGTCATT	150	False	NA	NA	False	NA	NA	NA	90249169	90268916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90249302_90255873_90256004_90256661_90256794_90257693_90257826_90258710_90258882_90259120_90259437_90261614_90261818_90262981_90263093_90263437_90263556_90265175
ENSMUSG00000042390.10_6	chr3	+	176	1	FSM	ENSMUSG00000042390.10	ENSMUST00000205797.2	2443	1	1897	370	1270	-370	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCTTTTAAAAAAA	1213	False	NA	NA	False	NA	NA	NA	90250232	90250408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90250200_90250400
ENSMUSG00000042390.10_9	chr3	+	4313	5	ISM	ENSMUSG00000042390.10	ENSMUST00000049382.6	1906	10	10330	-3483	566	-1804	3prime_fragment	FALSE	canonical	3	17	junction_2	4.02336923485777	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGTGAAACTGTGTTAT	4937	False	NA	NA	False	NA	NA	NA	90259290	90268910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_90259437_90261614_90261818_90262981_90263093_90263437_90263556_90265175
ENSMUSG00000042396.11_2	chr9	-	1769	5	FSM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	-4	8	-2	0	multi-exon	FALSE	canonical	3	400	junction_3	15.188400179084	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGAGAATGTGTCTC	NA	False	NA	-12	True	ATTAAA	-4	NA	48406601	48400008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48406454
ENSMUSG00000042396.11_22	chr9	-	2702	1	FSM	ENSMUSG00000042396.11	ENSMUST00000213525.2	2703	1	1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	48406598	48403896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_48403900_48406600
ENSMUSG00000042396.11_3	chr9	-	1878	6	FSM	ENSMUSG00000042396.11	ENSMUST00000214923.2	1867	6	-9	-2	-4	2	multi-exon	FALSE	canonical	0	0	junction_4	182.483314305719	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAGAATGTGTCTCTT	NA	False	NA	-10	True	ATTAAA	-6	NA	48406603	48400006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48405582_48405688_48406454
ENSMUSG00000042396.11_4	chr9	-	896	1	ISM	ENSMUSG00000042396.11	ENSMUST00000213276.2	2629	4	5692	6	5692	2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAGAATGTGTCTCTT	NA	False	NA	-10	True	ATTAAA	-6	NA	48400902	48400006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_48400000_48400900
ENSMUSG00000042396.11_7	chr9	-	2698	4	ISM	ENSMUSG00000042396.11	ENSMUST00000214923.2	1867	6	39	-2	39	2	intron_retention	FALSE	canonical	3	400	junction_3	16.8588914885357	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAGAATGTGTCTCTT	NA	False	NA	-10	True	ATTAAA	-6	NA	48406555	48400006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318
ENSMUSG00000042401.9_1	chr19	-	1190	10	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	-19157	-14	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_9	18.8325958557674	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATCTAACAACCT	2534	False	NA	-31	True	AATAAA	-3	NA	42295550	42271984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42295464
ENSMUSG00000042401.9_11	chr19	-	1182	5	ISM	ENSMUSG00000042401.9	ENSMUST00000238290.2	2164	15	133400	15259	-10431	-14	internal_fragment	FALSE	canonical	3	64	junction_3	5.74456264653803	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATCTAACAACCT	NA	False	NA	-31	True	AATAAA	-3	NA	42286824	42271984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721
ENSMUSG00000042401.9_13	chr19	-	1510	11	ISM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	112908	511	-30921	-14	3prime_fragment	FALSE	canonical	3	28	junction_9	16.5758860999948	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATCTAACAACCT	NA	False	NA	-31	True	AATAAA	-3	NA	42307314	42271984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043
ENSMUSG00000042401.9_15	chr19	-	790	7	ISM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	132567	519	-11262	-22	3prime_fragment	FALSE	canonical	3	50	junction_1	9.04924797366548	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAGGAAAAAAAAATCT	NA	False	NA	-39	True	TTTAAA	-8	NA	42287655	42271992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595
ENSMUSG00000042401.9_26	chr19	-	2168	15	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	1	-14	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	20.0529910232761	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATCTAACAACCT	NA	False	NA	-31	True	AATAAA	-3	NA	42420223	42271984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_42272120_42272561_42272706_42275611_42275715_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043_42307201_42312150_42312288_42322314_42322512_42402379_42402583_42420048
ENSMUSG00000042401.9_3	chr19	-	2116	15	FSM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	-1	503	1	-6	multi-exon	FALSE	canonical	3	19	junction_14	18.8128538342208	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAACAACCTTTGTGGAA	NA	False	NA	-23	True	AATAAA	-11	NA	42420223	42271976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043_42307201_42312150_42312288_42322314_42322512_42402379_42402583_42420048
ENSMUSG00000042401.9_5	chr19	-	3054	14	ISM	ENSMUSG00000042401.9	ENSMUST00000238290.2	2164	15	1	14755	1	-7	5prime_fragment	FALSE	canonical	3	19	junction_13	19.444656709652	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGCTAAGTCTTCCAGC	NA	False	NA	-6	True	GATAAA	-20	NA	42420223	42271480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043_42307201_42312150_42312288_42322314_42322512_42402379_42402583_42420048
ENSMUSG00000042401.9_8	chr19	-	681	5	ISM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	133926	502	-9903	-5	3prime_fragment	FALSE	canonical	3	50	junction_1	10.2347447452294	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAACAACCTTTGTGGAAA	NA	False	NA	-22	True	AATAAA	-12	NA	42286296	42271975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092
ENSMUSG00000042404.17_0	chr3	+	5600	28	FSM	ENSMUSG00000042404.17	ENSMUST00000129564.8	5647	28	39	8	39	-8	multi-exon	TRUE	canonical	3	27	junction_1	11.4060845793856	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTCTGCCTCCTGTTC	NA	False	NA	24	True	AGTAAA	-18	NA	90172530	90187968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90172869_90174719_90175060_90175549_90175803_90176054_90176125_90176294_90176465_90176540_90176786_90177361_90177429_90177519_90177579_90177753_90177899_90178135_90178312_90178440_90178542_90178873_90179090_90179562_90179709_90180021_90180162_90180243_90180371_90181110_90181318_90181595_90181725_90182752_90182952_90183529_90183698_90184186_90184576_90184727_90184851_90185041_90185212_90185294_90185437_90185617_90185855_90186466_90186594_90186684_90186851_90186926_90186992_90187083
ENSMUSG00000042404.17_25	chr3	+	4343	23	ISM	ENSMUSG00000042404.17	ENSMUST00000098914.10	5423	28	2796	18	294	-18	3prime_fragment	FALSE	canonical	3	31	junction_1	10.5721644499613	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTTTTTTTTCTTCTG	NA	False	NA	14	True	AGTAAA	-8	NA	90176616	90187958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_90176786_90177361_90177429_90177519_90177579_90177753_90177899_90178135_90178312_90178440_90178542_90178873_90179090_90179562_90179709_90180021_90180162_90180243_90180371_90181110_90181318_90181595_90181725_90182752_90182952_90183529_90183698_90184186_90184576_90184727_90184851_90185041_90185212_90185294_90185437_90185617_90185855_90186466_90186594_90186684_90186851_90186926_90186992_90187083
ENSMUSG00000042404.17_32	chr3	+	3048	14	ISM	ENSMUSG00000042404.17	ENSMUST00000098914.10	5423	28	6510	7	-2438	-7	3prime_fragment	FALSE	canonical	3	38	junction_5	9.22820477198082	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTCTGCCTCCTGTTCT	NA	False	NA	25	True	AGTAAA	-19	NA	90180330	90187969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_90180371_90181110_90181318_90181595_90181725_90182752_90182952_90183529_90183698_90184186_90184576_90184727_90184851_90185041_90185212_90185294_90185437_90185617_90185855_90186466_90186594_90186684_90186851_90186926_90186992_90187083
ENSMUSG00000042404.17_33	chr3	+	2863	13	ISM	ENSMUSG00000042404.17	ENSMUST00000098914.10	5423	28	7438	4	-1510	-4	3prime_fragment	FALSE	canonical	3	38	junction_4	9.41150300902512	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCCTCCTGTTCTCTG	NA	False	NA	28	True	AGTAAA	-22	NA	90181258	90187972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_90181318_90181595_90181725_90182752_90182952_90183529_90183698_90184186_90184576_90184727_90184851_90185041_90185212_90185294_90185437_90185617_90185855_90186466_90186594_90186684_90186851_90186926_90186992_90187083
ENSMUSG00000042406.9_0	chr15	+	1405	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	314	6	-25	-6	multi-exon	FALSE	canonical	3	1292	junction_2	43	1039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTACCTATGTGGGTTTT	4459	False	NA	26	True	AATAAA	-14	NA	80139698	80141736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_80139887_80140407_80140723_80140834
ENSMUSG00000042406.9_3	chr15	+	1055	2	ISM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	1189	2	850	-2	3prime_fragment	FALSE	canonical	3	1292	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTATGTGGGTTTTCAGT	5334	False	NA	30	True	AATAAA	-18	NA	80140573	80141740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_80140723_80140834
ENSMUSG00000042406.9_7	chr15	+	732	1	FSM	ENSMUSG00000042406.9	ENSMUST00000230434.2	2019	1	1281	6	1281	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTACCTATGTGGGTTTT	5765	False	NA	26	True	AATAAA	-14	NA	80141004	80141736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_80141000_80141700
ENSMUSG00000042408.14_1	chr4	+	4919	14	NIC	ENSMUSG00000042408.14	novel	4210	15	NA	NA	8	-76	intron_retention	TRUE	canonical	3	69	junction_3	8.41103811251486	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTTGTACAGGGATTT	2766	False	NA	-59	True	ATTAAA	-16	NA	126971197	127018087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126972340_126980767_126980835_126982121_126982348_126986704_126986877_126994402_126994554_126995641_126995758_126997204_126997481_126998063_126998215_126999066_126999240_127000368_127000517_127002340_127002509_127003717_127003756_127014220_127014366_127016141
ENSMUSG00000042408.14_13	chr4	+	4157	15	FSM	ENSMUSG00000042408.14	ENSMUST00000046751.13	4210	15	28	25	14	-25	multi-exon	FALSE	canonical	2	12	junction_1	19.4952898550038	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTTAATAACACAAGGGA	2772	False	NA	-8	True	NA	NA	NA	126971203	127018138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_126971394_126972200_126972340_126980767_126980835_126982121_126982348_126986704_126986877_126994402_126994554_126995641_126995758_126997204_126997481_126998063_126998215_126999066_126999240_127000368_127000517_127002340_127002509_127003717_127003756_127014220_127014366_127016141
ENSMUSG00000042408.14_38	chr4	+	3837	4	ISM	ENSMUSG00000042408.14	ENSMUST00000094713.4	3922	14	29668	21	3031	-19	3prime_fragment	FALSE	canonical	3	79	junction_1	7.34846922834953	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAACACAAGGGAGAAAAT	NA	False	NA	-2	True	NA	NA	NA	127000857	127018144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_127002509_127003717_127003756_127014220_127014366_127016141
ENSMUSG00000042408.14_40	chr4	+	366	1	ISM	ENSMUSG00000042408.14	ENSMUST00000046751.13	4210	15	46545	77	19894	-77	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGTTGTACAGGGATT	NA	False	NA	60	True	ATTAAA	-15	NA	127017720	127018086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_127017700_127018100
ENSMUSG00000042410.17_0	chr2	+	5557	20	FSM	ENSMUSG00000042410.17	ENSMUST00000047232.14	7359	20	94	1708	82	-1708	multi-exon	FALSE	canonical	3	643	junction_12	64.0151038271871	1459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAAAGGAAGTGTGGAG	581	False	NA	14	True	AATAAA	-25	NA	75662614	75759986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_75662856_75681837_75681928_75683065_75683157_75684513_75684635_75684874_75684950_75687360_75687433_75689242_75689323_75692277_75692359_75697090_75697217_75698648_75698758_75707814_75707943_75718459_75718512_75722135_75722213_75724388_75724502_75730525_75730596_75733261_75733324_75735202_75735293_75739944_75740045_75741964_75742023_75756265
ENSMUSG00000042410.17_68	chr2	+	2602	1	ISM	ENSMUSG00000042410.17	ENSMUST00000047232.14	7359	20	94864	1708	17870	-1708	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAAAGGAAGTGTGGAG	NA	False	NA	14	True	AATAAA	-25	NA	75757384	75759986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_75757400_75760000
ENSMUSG00000042414.8_1	chr1	-	3323	8	FSM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	-730	-29	-730	29	multi-exon	FALSE	canonical	3	189	junction_7	84.2663415993041	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGGTTCCTCTTTTCT	NA	False	NA	-29	True	AATAAA	-39	NA	13198117	13183651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13197333
ENSMUSG00000042414.8_2	chr1	-	2386	7	ISM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	1460	-29	1460	29	3prime_fragment	FALSE	canonical	3	343	junction_5	37.0135110466435	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGGTTCCTCTTTTCT	NA	False	NA	-29	True	AATAAA	-39	NA	13195927	13183651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389
ENSMUSG00000042419.9_0	chr17	-	1436	4	FSM	ENSMUSG00000042419.9	ENSMUST00000048994.7	1447	4	10	1	10	-1	multi-exon	FALSE	canonical	3	75	junction_2	9.89949493661167	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCAGAGTCTCCTCTGTT	NA	False	NA	-2	True	NA	NA	NA	35454758	35439151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35439953_35440112_35440335_35453927_35454208_35454625
ENSMUSG00000042419.9_1	chr17	-	971	2	FSM	ENSMUSG00000042419.9	ENSMUST00000176748.2	662	2	351	-660	351	-1	multi-exon	FALSE	canonical	3	96	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCAGAGTCTCCTCTGTT	NA	False	NA	-2	True	NA	NA	NA	35440282	35439151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35439953_35440112
ENSMUSG00000042419.9_2	chr17	-	1423	4	NNC	ENSMUSG00000042419.9	novel	1447	4	NA	NA	-687	-1	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	32.4995726467629	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCAGAGTCTCCTCTGTT	NA	False	NA	-2	True	NA	NA	NA	35455455	35439151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_35439953_35440112_35440335_35453927_35454208_35455335
ENSMUSG00000042419.9_4	chr17	-	1583	3	NIC	ENSMUSG00000042419.9	novel	1447	4	NA	NA	23	-1	intron_retention	FALSE	canonical	3	75	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCAGAGTCTCCTCTGTT	NA	False	NA	-2	True	NA	NA	NA	35454745	35439151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35440335_35453927_35454208_35454625
ENSMUSG00000042419.9_6	chr17	-	1095	3	ISM	ENSMUSG00000042419.9	ENSMUST00000048994.7	1447	4	769	1	769	-1	3prime_fragment	FALSE	canonical	3	75	junction_2	10.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCAGAGTCTCCTCTGTT	NA	False	NA	-2	True	NA	NA	NA	35453999	35439151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35439953_35440112_35440335_35453927
ENSMUSG00000042423.10_1	chr7	+	5149	18	FSM	ENSMUSG00000042423.10	ENSMUST00000205432.3	4166	18	-993	10	-993	-6	multi-exon	TRUE	canonical	3	16	junction_6	6.52702659137892	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGATTACCCCCTACCC	NA	False	NA	19	True	TATAAA	-13	NA	127077377	127090668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127078818_127079107_127079288_127080038_127080075_127080160_127080191_127081954_127082004_127082092_127082394_127083713_127084013_127084211_127084415_127084524_127084570_127084765_127084862_127085099_127085169_127086031_127086062_127086436_127086509_127086836_127086955_127087045_127087127_127088338_127088423_127088559_127088768_127088860
ENSMUSG00000042423.10_12	chr7	+	2723	11	FSM	ENSMUSG00000042423.10	ENSMUST00000048896.8	2650	11	-86	13	-86	-2	multi-exon	FALSE	canonical	3	17	junction_2	6.82348884369279	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTACCCCCTACCCTCCG	474	False	NA	23	True	TATAAA	-17	NA	127084306	127090672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127084415_127084524_127084570_127084765_127084862_127085099_127085169_127086031_127086062_127086436_127086509_127086836_127086955_127087045_127087127_127088338_127088423_127088559_127088768_127088860
ENSMUSG00000042423.10_14	chr7	+	2402	7	FSM	ENSMUSG00000042423.10	ENSMUST00000205651.2	2627	7	8	217	8	-8	multi-exon	FALSE	canonical	3	29	junction_1	3.30403793359983	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGAGATTACCCCCTAC	2196	False	NA	17	True	TATAAA	-11	NA	127086028	127090666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127086062_127086436_127086509_127086836_127086955_127087045_127087127_127088338_127088423_127088559_127088768_127088860
ENSMUSG00000042423.10_29	chr7	+	2299	5	ISM	ENSMUSG00000042423.10	ENSMUST00000205651.2	2627	7	814	217	600	-8	3prime_fragment	FALSE	canonical	3	30	junction_4	3.34477204006491	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGAGATTACCCCCTAC	3002	False	NA	17	True	TATAAA	-11	NA	127086834	127090666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127086955_127087045_127087127_127088338_127088423_127088559_127088768_127088860
ENSMUSG00000042423.10_30	chr7	+	1364	1	FSM	ENSMUSG00002075536.1	ENSMUST00020182022.1	91	1	-705	-568	-705	568	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTACCCCCTACCCTCCG	5476	False	NA	23	True	TATAAA	-17	NA	127089308	127090672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127089300_127090700
ENSMUSG00000042423.10_4	chr7	+	4767	18	NIC	ENSMUSG00000042423.10	novel	4166	18	NA	NA	-673	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	9.10682469664171	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTACCCCCTACCCTCCG	NA	False	NA	23	True	TATAAA	-17	NA	127077697	127090672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127078818_127079107_127079288_127080038_127080075_127080160_127080191_127081954_127082004_127082092_127082394_127083713_127084013_127084211_127084415_127084524_127084570_127084765_127084862_127085099_127085169_127086031_127086062_127086436_127086509_127086836_127086955_127087045_127087127_127088338_127088423_127088625_127088768_127088860
ENSMUSG00000042423.10_5	chr7	+	4118	17	NIC	ENSMUSG00000042423.10	novel	4166	18	NA	NA	-384	-624	intron_retention	FALSE	canonical	3	16	junction_6	6.16314651781053	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTCCTAGCCTCTGG	NA	False	NA	4	True	ATTAAA	-14	NA	127077986	127090050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127078818_127079107_127079288_127080038_127080075_127080160_127080191_127081954_127082004_127082092_127082394_127083713_127084013_127084211_127084415_127084524_127084862_127085099_127085169_127086031_127086062_127086436_127086509_127086836_127086955_127087045_127087127_127088338_127088423_127088559_127088768_127088860
ENSMUSG00000042423.10_8	chr7	+	3651	17	ISM	ENSMUSG00000042423.10	ENSMUST00000205432.3	4166	18	793	12	-23	-8	3prime_fragment	FALSE	canonical	3	16	junction_5	6.71722366383612	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGAGATTACCCCCTAC	NA	False	NA	17	True	TATAAA	-11	NA	127079163	127090666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127079288_127080038_127080075_127080160_127080191_127081954_127082004_127082092_127082394_127083713_127084013_127084211_127084415_127084524_127084570_127084765_127084862_127085099_127085169_127086031_127086062_127086436_127086509_127086836_127086955_127087045_127087127_127088338_127088423_127088559_127088768_127088860
ENSMUSG00000042426.7_0	chr13	+	4449	27	FSM	ENSMUSG00000042426.7	ENSMUST00000038574.7	4682	27	228	5	34	-5	multi-exon	TRUE	canonical	3	222	junction_12	28.2580040501697	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATATTTTGTCCATCTC	NA	False	NA	13	True	AATAAA	-13	NA	113064215	113105961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_113064508_113066160_113066235_113067375_113067490_113069040_113069171_113069617_113069764_113072002_113072132_113076906_113077034_113078206_113078366_113081027_113081194_113081603_113081728_113083296_113083909_113084745_113084890_113089336_113089514_113090207_113090349_113091681_113091827_113091933_113092052_113092915_113093001_113095446_113095536_113096652_113096782_113096856_113096933_113097594_113097820_113099267_113099405_113099796_113099891_113100980_113101275_113101748_113101881_113103069_113103167_113105668
ENSMUSG00000042426.7_33	chr13	+	2829	17	ISM	ENSMUSG00000042426.7	ENSMUST00000038574.7	4682	27	19468	5	14400	-5	3prime_fragment	FALSE	canonical	3	222	junction_2	26.8071090151475	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATATTTTGTCCATCTC	NA	False	NA	13	True	AATAAA	-13	NA	113083455	113105961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_113083909_113084745_113084890_113089336_113089514_113090207_113090349_113091681_113091827_113091933_113092052_113092915_113093001_113095446_113095536_113096652_113096782_113096856_113096933_113097594_113097820_113099267_113099405_113099796_113099891_113100980_113101275_113101748_113101881_113103069_113103167_113105668
ENSMUSG00000042428.7_3	chr15	+	4741	2	FSM	ENSMUSG00000042428.7	ENSMUST00000044970.7	4665	2	-80	4	-80	-4	multi-exon	FALSE	canonical	3	32	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGGGCGTGTGTGCTGTG	NA	False	NA	14	True	AATAAA	-15	NA	80057841	80099716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_80058040_80095173
ENSMUSG00000042428.7_6	chr15	+	2996	1	ISM	ENSMUSG00000042428.7	ENSMUST00000044970.7	4665	2	38800	3	38800	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGGCGTGTGTGCTGTGT	5366	False	NA	15	True	AATAAA	-16	NA	80096721	80099717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_80096700_80099700
ENSMUSG00000042436.13_0	chr11	+	1554	6	FSM	ENSMUSG00000042436.13	ENSMUST00000064783.10	1722	6	-29	197	-29	-197	multi-exon	FALSE	canonical	0	0	junction_1	1.26491106406735	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGCTTTGTGGACAGAC	NA	False	NA	NA	False	AATAAA	-16	NA	61376227	61379529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_61376312_61376546_61376632_61376863_61377019_61377735_61377833_61377904_61378088_61378579
ENSMUSG00000042439.14_24	chr18	+	5630	10	NIC	ENSMUSG00000042439.14	novel	5175	10	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	23.9294229757138	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTTCTTCAAGAGAGTTA	NA	False	NA	7	True	AATAAA	-20	NA	65715361	65822010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_65715470_65715967_65716078_65756054_65758406_65771820_65772003_65777263_65777441_65784630_65784794_65789421_65789704_65815965_65816079_65818595_65818762_65820032
ENSMUSG00000042439.14_25	chr18	+	4823	6	NIC	ENSMUSG00000042439.14	novel	5175	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	35.3496817524571	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTCTTCAAGAGAGTTAT	NA	False	NA	8	True	AATAAA	-21	NA	65715365	65822011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_65715470_65715967_65716078_65756054_65758406_65815965_65816079_65818595_65818762_65820032
ENSMUSG00000042439.14_39	chr18	+	4118	8	ISM	ENSMUSG00000042439.14	ENSMUST00000237553.2	5175	10	42194	-1073	-859	0	3prime_fragment	FALSE	canonical	3	46	junction_1	18.2711995964654	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTCTTCAAGAGAGTTAT	NA	False	NA	8	True	AATAAA	-21	NA	65757349	65822011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_65758406_65771820_65772003_65777263_65777441_65784630_65784794_65789421_65789704_65815965_65816079_65818595_65818762_65820032
ENSMUSG00000042439.14_49	chr18	+	1347	1	ISM	ENSMUSG00000042439.14	ENSMUST00000235822.2	6708	11	107682	503	40701	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTCTTCAAGAGAGTTAT	6020	False	NA	8	True	AATAAA	-21	NA	65820664	65822011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_65820700_65822000
ENSMUSG00000042439.14_54	chr18	+	5133	7	NIC	ENSMUSG00000042439.14	novel	5471	8	NA	NA	-33	1	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	36.5224436324966	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGAGCTTCTTCAAGAG	NA	False	NA	2	True	AATAAA	-15	NA	65713882	65822005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_65714220_65715797_65715881_65715967_65716078_65756054_65758406_65815965_65816079_65818595_65818762_65820032
ENSMUSG00000042439.14_7	chr18	+	5898	10	NIC	ENSMUSG00000042439.14	novel	5757	10	NA	NA	-73	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	22.2660678562196	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCTTCTTCAAGAGAGTT	NA	False	NA	6	True	AATAAA	-19	NA	65713842	65822009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_65714220_65715967_65716078_65756054_65758406_65771820_65772003_65777263_65777441_65784630_65784794_65789421_65789704_65815965_65816079_65818595_65818762_65820032
ENSMUSG00000042439.14_8	chr18	+	5029	6	NIC	ENSMUSG00000042439.14	novel	5757	10	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	33.5952377577537	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTCTTCAAGAGAGTTAT	NA	False	NA	8	True	AATAAA	-21	NA	65713909	65822011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_65714220_65715967_65716078_65756054_65758406_65815965_65816079_65818595_65818762_65820032
ENSMUSG00000042444.11_0	chr9	-	3768	1	ISM	ENSMUSG00000042444.11	ENSMUST00000049031.6	8081	9	54389	4	54362	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACATTCTCTCTGTGTGT	NA	False	NA	-2	True	AATAAA	-16	NA	70510067	70506299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_70506300_70510100
ENSMUSG00000042444.11_2	chr9	-	3503	9	FSM	ENSMUSG00000042444.11	ENSMUST00000049031.6	8081	9	12	4566	-11	968	multi-exon	FALSE	canonical	3	12	junction_5	3.11247489949718	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATACCTGGTAAGTAAGT	NA	False	NA	NA	False	TATAAA	-11	NA	70564444	70510861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_70512572_70514739_70514941_70518110_70518285_70524045_70524189_70534036_70534140_70538277_70538437_70541286_70541352_70552170_70552229_70563554
ENSMUSG00000042444.11_3	chr9	-	3606	9	FSM	ENSMUSG00000042444.11	ENSMUST00000213380.2	2521	9	89	-1174	85	1174	multi-exon	FALSE	canonical	0	0	junction_1	6.34305722818264	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAGTATGCTTGAGGCA	NA	False	NA	NA	False	AATAAA	-14	NA	70564344	70510655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_70512569_70514739_70514941_70518110_70518285_70524045_70524189_70534036_70534140_70538277_70538437_70541286_70541352_70552170_70552229_70563554
ENSMUSG00000042444.11_4	chr9	-	1017	2	ISM	ENSMUSG00000042444.11	ENSMUST00000214293.2	1779	5	-14	18583	-10	-18583	5prime_fragment	FALSE	canonical	3	20	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGTGCTATTAGGTATTC	NA	False	NA	NA	False	AATAAA	-20	NA	70564443	70552100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_70552229_70563554
ENSMUSG00000042446.17_0	chr4	-	6672	30	NNC	ENSMUSG00000042446.17	novel	7102	30	NA	NA	-56	-483	at_least_one_novel_splicesite	FALSE	canonical	3	165	junction_15	36.0808643919119	178	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACCAGGTGTCATCCT	NA	False	NA	-15	True	AATAAA	-7	NA	126861984	126756214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_126758111_126759289_126759420_126762509_126762759_126763975_126764088_126771421_126771574_126776007_126776104_126776232_126776405_126783307_126783403_126783788_126783969_126784807_126784862_126787087_126787260_126789072_126789189_126792088_126792234_126793724_126793763_126794397_126794539_126796335_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294_126819817_126842226_126842273_126861608
ENSMUSG00000042446.17_5	chr4	-	6685	30	FSM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	-51	468	-51	-468	multi-exon	FALSE	canonical	3	101	junction_15	43.6375461501576	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGCTGTATCAGTTCTG	NA	False	NA	0	True	AATAAA	-22	NA	126861979	126756199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126758111_126759289_126759420_126762509_126762759_126763975_126764088_126771421_126771574_126776007_126776104_126776232_126776405_126783307_126783403_126783788_126783969_126784807_126784862_126787087_126787260_126789072_126789189_126792088_126792234_126793724_126793763_126794397_126794542_126796335_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294_126819817_126842226_126842273_126861608
ENSMUSG00000042446.17_7	chr4	-	1835	1	ISM	ENSMUSG00000042446.17	ENSMUST00000135003.2	5799	24	59369	6	6694	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGATGGGTGAGTTCTTT	NA	False	NA	-16	True	AATAAA	-14	NA	126757572	126755737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126755700_126757600
ENSMUSG00000042447.14_0	chr6	+	3005	12	FSM	ENSMUSG00000042447.14	ENSMUST00000040017.8	3710	12	33	672	33	-666	multi-exon	FALSE	canonical	3	253	junction_5	31.0917065288484	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATGTGATGTTTGAGTG	15	True	NA	13	True	AATAAA	-16	NA	8209254	8235602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_8209412_8211579_8211639_8214765_8216100_8216371_8216471_8222460_8222716_8224554_8224725_8226843_8226910_8227968_8228128_8231160_8231314_8233049_8233255_8234231_8234362_8235384
ENSMUSG00000042447.14_30	chr6	+	2503	10	ISM	ENSMUSG00000042447.14	ENSMUST00000040017.8	3710	12	6466	36	6466	-30	3prime_fragment	FALSE	canonical	3	253	junction_3	31.4269680527354	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CGCAGACAATAAATAAAAAA	6367	False	NA	NA	False	NA	NA	NA	8215687	8236238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_8216100_8216371_8216471_8222460_8222716_8224554_8224725_8226843_8226910_8227968_8228128_8231160_8231314_8233049_8233255_8234231_8234362_8235384
ENSMUSG00000042448.6_0	chr2	+	1819	2	FSM	ENSMUSG00000042448.6	ENSMUST00000047793.6	1862	2	33	10	33	-10	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAATCTACTATTCTCTG	NA	False	NA	NA	False	AATAAA	-5	NA	74593356	74595476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_74594098_74594398
ENSMUSG00000042451.13_0	chr1	+	1630	10	ISM	ENSMUSG00000042451.13	ENSMUST00000038445.13	1828	11	285	0	276	0	3prime_fragment	TRUE	canonical	1	2	junction_2	2.21108319357027	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCATGGGGTTTCTGTGG	NA	False	NA	NA	False	AATAAA	-14	NA	134121470	134128969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_134121687_134122314_134122483_134124707_134124797_134125088_134125285_134125467_134125608_134126138_134126299_134127451_134127589_134127687_134127875_134128132_134128186_134128685
ENSMUSG00000042460.6_0	chr6	+	6113	4	FSM	ENSMUSG00000042460.6	ENSMUST00000040159.6	6092	4	-28	7	-28	-7	multi-exon	FALSE	canonical	3	122	junction_1	4.89897948556636	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAAATTGCTTCATCTGT	-19	True	NA	9	True	AATAAA	-10	NA	7844813	7875680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_7845395_7863904_7864142_7866375_7867044_7871053
ENSMUSG00000042460.6_10	chr6	+	3026	1	ISM	ENSMUSG00000042460.6	ENSMUST00000040159.6	6092	4	27815	5	27815	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTGCTTCATCTGTGT	1095	False	NA	11	True	AATAAA	-12	NA	7872656	7875682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_7872700_7875700
ENSMUSG00000042460.6_8	chr6	+	3832	3	ISM	ENSMUSG00000042460.6	ENSMUST00000040159.6	6092	4	19111	1659	19111	-1659	3prime_fragment	FALSE	canonical	3	128	junction_1	3	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGGTCTGTGCATCATTG	NA	False	NA	NA	False	AATAAA	-15	NA	7863952	7874028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_7864142_7866375_7867044_7871053
ENSMUSG00000042460.6_9	chr6	+	5019	2	ISM	ENSMUSG00000042460.6	ENSMUST00000040159.6	6092	4	21812	5	21812	-5	3prime_fragment	FALSE	canonical	3	134	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTGCTTCATCTGTGT	NA	False	NA	11	True	AATAAA	-12	NA	7866653	7875682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_7867044_7871053
ENSMUSG00000042462.5_0	chr7	-	614	3	FSM	ENSMUSG00000042462.5	ENSMUST00000035276.5	676	3	57	5	57	-5	multi-exon	FALSE	canonical	3	3852	junction_1	65	826	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACATCTCGATTTTTCT	2547	False	NA	-6	True	AATAAA	-13	NA	126859824	126856135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126856509_126858529_126858641_126859694
ENSMUSG00000042472.12_1	chr12	+	2325	12	FSM	ENSMUSG00000042472.12	ENSMUST00000045931.12	2597	12	268	4	2	-1	multi-exon	FALSE	canonical	3	183	junction_3	18.7929123266993	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCACCTCTTTGGCTCTTG	1851	False	NA	7	True	AATAAA	-12	NA	84363893	84390493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ENSMUSG00000042472.12_16	chr12	+	2353	12	NIC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	58.2940678552067	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCACCTCTTTGGCTCTT	1857	False	NA	6	True	AATAAA	-11	NA	84363899	84390492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_84363984_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ENSMUSG00000042472.12_7	chr12	+	2014	10	NIC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	65.7317782101372	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTGGCTCTTGTTTT	1850	False	NA	11	True	AATAAA	-16	NA	84363892	84390497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_84363949_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ENSMUSG00000042473.9_0	chrX	+	1442	4	ISM	ENSMUSG00000042473.9	ENSMUST00000096313.4	5094	21	-31	46584	-31	-38422	5prime_fragment	FALSE	canonical	2	3	junction_2	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGAAATTGCTTTCTAATT	NA	False	NA	NA	False	TATAAA	-34	NA	138585713	138607570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_138586060_138601747_138601859_138605350_138605470_138606704
ENSMUSG00000042473.9_1	chrX	+	5925	21	FSM	ENSMUSG00000042473.9	ENSMUST00000096313.4	5094	21	-14	-817	-14	817	multi-exon	FALSE	canonical	0	0	junction_6	1.5644487847162	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTACTAAAAGGCCAAATG	NA	False	NA	NA	False	NA	NA	NA	138585730	138654971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_138586060_138601747_138601859_138605350_138605470_138606704_138606931_138607865_138608107_138613002_138613211_138614003_138614169_138624651_138624802_138625826_138625978_138626412_138626628_138633006_138633125_138634703_138634990_138637037_138637168_138637702_138637802_138642675_138642745_138642900_138643142_138644104_138644171_138645956_138646041_138647099_138647157_138650696_138650795_138652209
ENSMUSG00000042473.9_4	chrX	+	1594	1	Genic_Genomic	ENSMUSG00000042473.9	novel	NA	NA	NA	NA	16182	542	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAATAAATAAAGAG	NA	False	NA	NA	False	NA	NA	NA	138653102	138654696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_138653100_138654700
ENSMUSG00000042476.13_0	chr5	+	4075	28	FSM	ENSMUSG00000042476.13	ENSMUST00000003717.13	4079	28	0	4	0	-4	multi-exon	FALSE	canonical	0	0	junction_4	1.68508343201146	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGGCGTGTAAAAGAAG	NA	False	NA	NA	False	AATAAA	-18	NA	8943716	9009222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_8943908_8944087_8944165_8946572_8946628_8949567_8949719_8955974_8956033_8957207_8957400_8959101_8959274_8960618_8960744_8964955_8965128_8968658_8968773_8970019_8970131_8970334_8970461_8977770_8977975_8978406_8978578_8980741_8980904_8984155_8984327_8985175_8985323_8986784_8986890_8988578_8988657_8989833_8989918_8990910_8991115_8996018_8996120_8997296_8997438_8999948_9000106_9000659_9000858_9005388_9005596_9008310_9008458_9008968
ENSMUSG00000042487.7_0	chr9	+	2164	12	FSM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	12	4	12	-4	multi-exon	FALSE	canonical	3	353	junction_2	48.4889013457617	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTCCCTATGCTTAAGA	938	False	NA	1	True	AATAAA	-10	NA	75348829	75373710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_75348918_75352516_75353276_75354383_75354489_75355583_75355679_75356638_75356785_75357769_75357855_75361905_75362001_75362922_75363058_75364339_75364476_75365356_75365544_75368287_75368386_75373475
ENSMUSG00000042487.7_17	chr9	+	1762	11	ISM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	4010	7	-3534	-7	3prime_fragment	FALSE	canonical	3	353	junction_1	46.3784432683979	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCAAGTCCCTATGCTTA	4936	False	NA	-2	True	AATAAA	-7	NA	75352827	75373707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_75353276_75354383_75354489_75355583_75355679_75356638_75356785_75357769_75357855_75361905_75362001_75362922_75363058_75364339_75364476_75365356_75365544_75368287_75368386_75373475
ENSMUSG00000042489.16_0	chr4	+	5259	25	NIC	ENSMUSG00000042489.16	novel	5027	26	NA	NA	-13	-1	intron_retention	FALSE	canonical	1	26	junction_4	21.999842171151	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCTGTCCAGCTCTAGT	NA	False	NA	29	True	AATAAA	-22	NA	126450774	126487695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467141_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444
ENSMUSG00000042489.16_13	chr4	+	5235	25	NIC	ENSMUSG00000042489.16	novel	5027	26	NA	NA	-7	-4	intron_retention	FALSE	canonical	2	10	junction_4	23.6806003583806	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGCTGTCCAGCTCT	NA	False	NA	26	True	AATAAA	-19	NA	126450780	126487692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455698_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467141_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444
ENSMUSG00000042489.16_15	chr4	+	5251	25	NIC	ENSMUSG00000042489.16	novel	5027	26	NA	NA	-13	3	intron_retention	FALSE	canonical	1	13	junction_1	25.1900760331436	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCCAGCTCTAGTGGTC	NA	False	NA	33	True	AATAAA	-26	NA	126450774	126487699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126450919_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467141_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444
ENSMUSG00000042489.16_3	chr4	+	5017	26	NIC	ENSMUSG00000042489.16	novel	5027	26	NA	NA	-13	-2	combination_of_known_junctions	FALSE	canonical	1	26	junction_4	22.9307130285999	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGCTGTCCAGCTCTAG	NA	False	NA	28	True	AATAAA	-21	NA	126450774	126487694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467141_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444_126486595_126486835
ENSMUSG00000042489.16_37	chr4	+	3327	19	NIC	ENSMUSG00000042489.16	novel	5027	26	NA	NA	-394	-381	combination_of_known_junctions	FALSE	canonical	3	36	junction_18	22.7498473743354	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGCTATTAGTCGCTTTC	NA	False	NA	11	True	AATAAA	-13	NA	126459953	126487315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126460375_126466071_126466264_126466928_126467141_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444_126486595_126486835
ENSMUSG00000042489.16_44	chr4	+	3162	16	NIC	ENSMUSG00000042489.16	novel	5027	26	NA	NA	891	-4	intron_retention	FALSE	canonical	3	58	junction_1	18.858066355453	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGCTGTCCAGCTCT	960	False	NA	26	True	AATAAA	-19	NA	126467098	126487692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126467141_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444
ENSMUSG00000042489.16_59	chr4	+	809	1	Genic_Genomic	ENSMUSG00000042489.16	novel	NA	NA	NA	NA	11781	5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCTCTAGTGGTCAT	NA	False	NA	35	True	AATAAA	-28	NA	126486892	126487701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_126486900_126487700
ENSMUSG00000042492.13_0	chr7	-	3275	9	FSM	ENSMUSG00000042492.13	ENSMUST00000120705.3	3614	9	1	338	1	-338	multi-exon	FALSE	canonical	3	338	junction_3	35.2311563108564	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCGCCTTGTTATTTGAA	1543	False	NA	-1	True	AATGAA	-18	NA	126807639	126796968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126798385_126798469_126798625_126798904_126799095_126799266_126799333_126799456_126799572_126802343_126802451_126802545_126802654_126802912_126803013_126806621
ENSMUSG00000042492.13_1	chr7	-	1002	1	ISM	ENSMUSG00000042492.13	ENSMUST00000120705.3	3614	9	9670	338	1187	-338	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCGCCTTGTTATTTGAA	2660	False	NA	-1	True	AATGAA	-18	NA	126797970	126796968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126797000_126798000
ENSMUSG00000042496.19_0	chr9	+	6861	22	NIC	ENSMUSG00000042496.19	novel	6772	22	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_21	7.64460000896398	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGCATGTTTCTTTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	31191844	31293019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957_31241162_31246612_31246686_31248600_31248719_31251625_31251756_31252537_31252781_31258088_31258437_31260407_31260564_31264582_31264763_31265770_31265882_31268437_31268639_31270303_31270448_31271044_31271216_31272116_31272258_31273626_31273796_31282119_31282224_31289635
ENSMUSG00000042496.19_1	chr9	+	1931	7	FSM	ENSMUSG00000042496.19	ENSMUST00000117389.8	1952	7	11	10	0	1	multi-exon	FALSE	canonical	3	31	junction_2	4.53688586293873	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTCTATGTCATGAGC	NA	False	NA	NA	False	AATAAA	-11	NA	31191844	31241904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957
ENSMUSG00000042496.19_2	chr9	+	4741	22	NNC	ENSMUSG00000042496.19	novel	6772	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_21	8.75776299624583	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGCATGTTTCTTTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	31191844	31293019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957_31241162_31246612_31246686_31248600_31248719_31251625_31251756_31252537_31252781_31258088_31258437_31260407_31260564_31264582_31264763_31265770_31265882_31268437_31268639_31270303_31270448_31271044_31271216_31272116_31272258_31273626_31273796_31282119_31282224_31291755
ENSMUSG00000042496.19_22	chr9	+	4576	8	NIC	ENSMUSG00000042496.19	novel	6772	22	NA	NA	39217	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_7	10.5926428068095	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGCATGTTTCTTTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	31265619	31293019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_31265882_31268437_31268639_31270303_31270448_31271044_31271216_31272116_31272258_31273626_31273796_31282119_31282224_31289635
ENSMUSG00000042496.19_30	chr9	+	2539	1	ISM	ENSMUSG00000042496.19	ENSMUST00000215499.2	6772	22	98636	0	64078	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGCATGTTTCTTTCTT	9233	False	NA	NA	False	AATAAA	-10	NA	31290480	31293019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_31290500_31293000
ENSMUSG00000042499.14_0	chr2	+	1838	2	FSM	ENSMUSG00000042499.14	ENSMUST00000142312.3	1111	2	-296	-431	-296	431	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGCAAAATGGAGGTCCC	NA	False	NA	NA	False	AATAAA	-6	NA	74512370	74514943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_74513512_74514246
ENSMUSG00000042500.12_2	chr4	-	1787	9	NIC	ENSMUSG00000042500.12	novel	6537	18	NA	NA	-15	3865	intron_retention	FALSE	canonical	1	2	junction_4	2.82566363886433	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAACATAAAAATGGTCTTA	2227	False	NA	NA	False	AATAAA	-18	NA	126427280	126405404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126405912_126406312_126406461_126409679_126409768_126410629_126410765_126410862_126411000_126411168_126411351_126413983_126414105_126419790_126419957_126426977
ENSMUSG00000042500.12_3	chr4	-	6512	18	FSM	ENSMUSG00000042500.12	ENSMUST00000084289.5	6537	18	21	4	21	-4	multi-exon	TRUE	canonical	0	0	junction_1	2.71991247569339	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTGTTTTTCTCATCA	2263	False	NA	NA	False	AATAAA	-17	NA	126427244	126383337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126387125_126390541_126390742_126391003_126391106_126400536_126400672_126400803_126401120_126402140_126402301_126403743_126403929_126405192_126405327_126405518_126405648_126405791_126405912_126406312_126406461_126409679_126409768_126410629_126410765_126410862_126411000_126411168_126411351_126413983_126414105_126419790_126419957_126426977
ENSMUSG00000042502.11_0	chr7	-	3280	6	ISM	ENSMUSG00000042502.11	ENSMUST00000206026.2	2906	7	40	33	-23	-4	3prime_fragment	FALSE	canonical	3	578	junction_3	18.2274518241031	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACATTGTGGTAATTTAA	5560	False	NA	-5	True	NA	NA	NA	126795070	126791200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532
ENSMUSG00000042502.11_1	chr7	-	2910	7	FSM	ENSMUSG00000042502.11	ENSMUST00000166791.8	3284	7	3	371	3	-6	multi-exon	FALSE	canonical	3	356	junction_6	93.763295353542	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTACATTGTGGTAATTT	5461	False	NA	-7	True	NA	NA	NA	126795169	126791202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795100
ENSMUSG00000042502.11_2	chr7	-	2864	7	NIC	ENSMUSG00000042502.11	novel	2906	7	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	74	junction_6	198.070413966571	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTACATTGTGGTAATTT	5521	False	NA	-7	True	NA	NA	NA	126795109	126791202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795086
ENSMUSG00000042502.11_3	chr7	-	2991	7	NIC	ENSMUSG00000042502.11	novel	3284	7	NA	NA	3	-5	combination_of_known_junctions	FALSE	canonical	3	67	junction_6	200.670058110876	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTACATTGTGGTAATTTA	5523	False	NA	-6	True	NA	NA	NA	126795107	126791201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126794958
ENSMUSG00000042502.11_6	chr7	-	1243	1	ISM	ENSMUSG00000042502.11	ENSMUST00000166791.8	3284	7	2730	368	2174	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATTGTGGTAATTTAAT	8188	False	NA	-4	True	NA	NA	NA	126792442	126791199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126791200_126792400
ENSMUSG00000042502.11_9	chr7	-	2329	3	ISM	ENSMUSG00000042502.11	ENSMUST00000205525.2	3072	6	1428	5	923	-3	3prime_fragment	FALSE	canonical	3	601	junction_2	17	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATTGTGGTAATTTAAT	6937	False	NA	-4	True	NA	NA	NA	126793693	126791199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126793103_126793186_126793294_126793374
ENSMUSG00000042505.7_0	chr6	+	741	2	FSM	ENSMUSG00000042505.7	ENSMUST00000040826.6	4323	2	13	3569	10	-3569	multi-exon	FALSE	canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATGGAAGATGTAGAAT	-5	True	NA	NA	False	AATAAA	-9	NA	6956016	7039410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_6956201_7038853
ENSMUSG00000042505.7_3	chr6	+	879	3	NIC	ENSMUSG00000042505.7	novel	966	3	NA	NA	2	-3573	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATAATAATGGAAGATGTA	-13	True	NA	NA	False	AATAAA	-5	NA	6956008	7039406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_6956201_6957003_6957138_7038853
ENSMUSG00000042506.16_0	chr11	-	2126	1	ISM	ENSMUSG00000042506.16	ENSMUST00000041683.9	4434	13	21142	3	3479	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTGACTCTCTGCCTCA	NA	False	NA	-7	True	AATAAA	-17	NA	61044739	61042613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_61042600_61044700
ENSMUSG00000042506.16_1	chr11	-	4403	13	FSM	ENSMUSG00000042506.16	ENSMUST00000041683.9	4434	13	27	4	1	-4	multi-exon	FALSE	canonical	3	276	junction_4	25.4114748795806	883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACCTGACTCTCTGCCTC	NA	False	NA	-8	True	AATAAA	-16	NA	61065854	61042614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61045340_61046005_61046156_61046593_61046657_61047996_61048089_61049117_61049245_61050030_61050190_61051397_61051504_61052139_61052288_61053652_61053823_61054551_61054654_61057496_61057611_61059085_61059219_61065540
ENSMUSG00000042507.16_0	chr12	-	1661	1	ISM	ENSMUSG00000042507.16	ENSMUST00000046266.13	6848	13	68045	0	4396	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTCATTGTTGAA	NA	False	NA	-11	True	ATTAAA	-10	NA	84197610	84195949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84195900_84197600
ENSMUSG00000042507.16_2	chr12	-	4218	13	FSM	ENSMUSG00000042507.16	ENSMUST00000110294.2	7156	13	-36	2974	-36	207	multi-exon	FALSE	canonical	3	72	junction_9	16.3681601491025	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGTTAAGGGCTGCAGG	NA	False	NA	-8	True	AATAAA	-29	NA	84240825	84199025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_84199336_84199608_84199806_84201668_84201882_84203200_84203351_84205028_84205118_84205749_84205826_84206423_84206528_84206648_84206792_84207252_84207320_84209029_84209376_84218233_84218534_84219527_84221198_84240272
ENSMUSG00000042507.16_3	chr12	-	6129	12	ISM	ENSMUSG00000042507.16	ENSMUST00000110294.2	7156	13	20204	-102	-13673	0	3prime_fragment	TRUE	canonical	3	72	junction_9	15.4111690741295	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTCATTGTTGAA	5609	False	NA	-11	True	ATTAAA	-10	NA	84220585	84195949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_84199336_84199608_84199806_84201668_84201882_84203200_84203351_84205028_84205118_84205749_84205826_84206423_84206528_84206648_84206792_84207252_84207320_84209029_84209376_84218233_84218534_84219527
ENSMUSG00000042507.16_4	chr12	-	3773	13	FSM	ENSMUSG00000042507.16	ENSMUST00000220974.2	3565	13	1	-209	1	209	multi-exon	FALSE	canonical	3	40	junction_12	22.3288241716596	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTAAGGGCTGCAGGAT	NA	False	NA	-6	True	AATAAA	-31	NA	84265654	84199023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_84199336_84199608_84199806_84201668_84201882_84203200_84203351_84205028_84205118_84205749_84205826_84206423_84206528_84206648_84206792_84207252_84207320_84209029_84209376_84218233_84218534_84219527_84221198_84265548
ENSMUSG00000042508.17_0	chr5	-	3690	18	FSM	ENSMUSG00000042508.17	ENSMUST00000071921.13	3806	18	40	76	1	0	multi-exon	FALSE	canonical	3	130	junction_6	37.7529760049699	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCAAGATTTTGAGCC	NA	False	NA	-10	True	AATAAA	-15	NA	9211736	9168876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
ENSMUSG00000042508.17_18	chr5	-	4897	17	NIC	ENSMUSG00000042508.17	novel	3806	18	NA	NA	1	0	intron_retention	FALSE	canonical	3	158	junction_5	28.7793328623163	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCAAGATTTTGAGCC	NA	False	NA	-10	True	AATAAA	-15	NA	9211736	9168876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
ENSMUSG00000042508.17_2	chr5	-	3483	17	FSM	ENSMUSG00000042508.17	ENSMUST00000095017.11	3498	17	10	5	-2	0	multi-exon	FALSE	canonical	3	112	junction_5	37.579706957346	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCAAGATTTTGAGCC	NA	False	NA	-10	True	AATAAA	-15	NA	9211739	9168876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
ENSMUSG00000042508.17_8	chr5	-	3568	17	NIC	ENSMUSG00000042508.17	novel	3806	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_14	61.258640972111	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCAAGATTTTGAGCC	NA	False	NA	-10	True	AATAAA	-15	NA	9211737	9168876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9200375_9200493_9201797_9201919_9211613
ENSMUSG00000042510.8_0	chr1	+	2954	4	FSM	ENSMUSG00000042510.8	ENSMUST00000039323.8	2909	4	-49	4	-49	-3	multi-exon	FALSE	canonical	1	1	junction_2	1.63299316185545	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGATTCTGGAGTCCCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	130659663	130672355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_130659961_130665238_130665425_130668739_130668921_130670065
ENSMUSG00000042515.14_2	chrX	+	4168	4	FSM	ENSMUSG00000042515.14	ENSMUST00000113042.3	4182	4	11	3	11	-1	multi-exon	FALSE	canonical	1	1	junction_1	3.29983164553722	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGATTTTGTATTATTTTA	NA	False	NA	NA	False	NA	NA	NA	138117925	138139081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_138117964_138132034_138132164_138134427_138134595_138135247
ENSMUSG00000042515.14_4	chrX	+	4043	3	ISM	ENSMUSG00000042515.14	ENSMUST00000113041.9	4343	5	14202	8	14202	-6	3prime_fragment	FALSE	canonical	2	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGATTGATTTTGTATTA	NA	False	NA	NA	False	NA	NA	NA	138132116	138139076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_138132164_138134427_138134595_138135247
ENSMUSG00000042515.14_6	chrX	+	4327	5	FSM	ENSMUSG00000042515.14	ENSMUST00000113041.9	4343	5	10	6	10	-4	multi-exon	FALSE	canonical	0	0	junction_1	3.76662979332984	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATTGATTTTGTATTATT	NA	False	NA	NA	False	NA	NA	NA	138117924	138139078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_138117964_138118896_138119058_138132034_138132164_138134427_138134595_138135247
ENSMUSG00000042520.17_25	chr3	-	3815	29	NIC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	-4	-243	combination_of_known_junctions	FALSE	canonical	3	197	junction_1	254.875579890443	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAGTCTCCTCCTTTATT	3543	False	NA	-2	True	AATATA	-16	NA	89959786	89907842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89908299_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ENSMUSG00000042520.17_254	chr3	-	3478	26	NIC	ENSMUSG00000042520.17	novel	3516	26	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	281	junction_25	216.717534131413	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAACTCTGCGTTCTTTC	3552	False	NA	-7	True	AATAAA	-16	NA	89959777	89913529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
ENSMUSG00000042520.17_255	chr3	-	3422	26	NIC	ENSMUSG00000042520.17	novel	3494	26	NA	NA	-4	-3	combination_of_known_junctions	FALSE	canonical	3	320	junction_1	177.654063843189	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAACTCTGCGTTCTTTC	3543	False	NA	-7	True	AATAAA	-16	NA	89959786	89913529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ENSMUSG00000042520.17_256	chr3	-	3440	26	NIC	ENSMUSG00000042520.17	novel	3494	26	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	289	junction_17	212.482304204374	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTGCGTTCTTTCCGT	3543	False	NA	-4	True	AATAAA	-19	NA	89959786	89913526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ENSMUSG00000042520.17_258	chr3	-	3399	25	NIC	ENSMUSG00000042520.17	novel	3516	26	NA	NA	398	-3	combination_of_known_junctions	FALSE	canonical	3	320	junction_1	173.827575607746	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAACTCTGCGTTCTTTC	8121	False	NA	-7	True	AATAAA	-16	NA	89955208	89913529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076
ENSMUSG00000042520.17_47	chr3	-	4004	29	NIC	ENSMUSG00000042520.17	novel	3975	28	NA	NA	-5	-40	combination_of_known_junctions	FALSE	canonical	3	197	junction_1	232.539682810553	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATACATATATATATAAAAA	3542	False	NA	59	True	NA	NA	NA	89959787	89907639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89908299_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ENSMUSG00000042520.17_6	chr3	-	3954	28	FSM	ENSMUSG00000042520.17	ENSMUST00000196843.5	3975	28	-17	38	-4	-38	multi-exon	FALSE	canonical	3	275	junction_1	196.719480946381	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACATATATATATAAAAAAA	3543	False	NA	61	True	NA	NA	NA	89959786	89907637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ENSMUSG00000042520.17_74	chr3	-	3766	28	NIC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	-4	-241	combination_of_known_junctions	FALSE	canonical	3	275	junction_1	225.006501963668	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCTCCTCCTTTATTAT	3543	False	NA	0	True	AATATA	-18	NA	89959786	89907840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ENSMUSG00000042523.13_2	chr12	+	711	8	FSM	ENSMUSG00000042523.13	ENSMUST00000123491.8	5727	8	1	5015	1	45	multi-exon	FALSE	canonical	2	7	junction_1	4.44007721940573	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACATCTCTCACTTCC	9913	False	NA	NA	False	TTTAAA	-28	NA	84161140	84185276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84161174_84168056_84168096_84171248_84171359_84173735_84173792_84178105_84178162_84182340_84182468_84183270_84183412_84185127
ENSMUSG00000042523.13_5	chr12	+	2287	1	ISM	ENSMUSG00000042523.13	ENSMUST00000123491.8	5727	8	26855	10	5555	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAGAAGTCCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	84187994	84190281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_84188000_84190300
ENSMUSG00000042529.15_3	chr11	+	2293	2	FSM	ENSMUSG00000042529.15	ENSMUST00000089184.11	2291	2	-4	2	-4	2	multi-exon	FALSE	canonical	3	70	junction_1	0	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGCTTGCTCTTCTGT	NA	False	NA	28	True	AATAAA	-40	NA	60913385	60961955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60913677_60959953
ENSMUSG00000042535.10_0	chr15	+	3406	12	FSM	ENSMUSG00000042535.10	ENSMUST00000046463.10	3449	12	40	3	40	-3	multi-exon	TRUE	canonical	3	199	junction_6	19.3826198026279	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAGTGTCATGTTCCCTG	NA	False	NA	14	True	AATAAA	-15	NA	79575085	79605677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79575300_79578356_79578469_79591192_79591374_79591895_79592245_79596296_79596421_79597564_79597680_79600047_79600193_79600286_79600470_79601183_79601320_79601795_79601975_79603228_79603430_79604210
ENSMUSG00000042535.10_22	chr15	+	2763	9	ISM	ENSMUSG00000042535.10	ENSMUST00000046463.10	3449	12	16982	7	-64	-7	3prime_fragment	FALSE	canonical	3	199	junction_3	17.1131345755241	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGACAGTGTCATGTTC	NA	False	NA	10	True	AATAAA	-11	NA	79592027	79605673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_79592245_79596296_79596421_79597564_79597680_79600047_79600193_79600286_79600470_79601183_79601320_79601795_79601975_79603228_79603430_79604210
ENSMUSG00000042541.11_0	chr6	-	446	3	FSM	ENSMUSG00000042541.11	ENSMUST00000041111.10	1472	3	30	996	30	-996	multi-exon	FALSE	canonical	3	3186	junction_2	110.5	518	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTTTTGGTTCAGATGT	5	True	NA	-14	True	AATAAA	-12	NA	6578628	6558289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_6558492_6560407_6560502_6578478
ENSMUSG00000042548.15_0	chr2	+	5056	12	FSM	ENSMUSG00000042548.15	ENSMUST00000227428.2	6981	12	17	1908	1	-1908	multi-exon	FALSE	canonical	0	0	junction_2	51.8797082897678	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTAGTGTGTGTATTTT	NA	False	NA	21	True	AATAAA	-23	NA	153187765	153244019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153188311_153194108_153194192_153198989_153199099_153233448_153233570_153233644_153233743_153234760_153234855_153235268_153235422_153235543_153235708_153235801_153235899_153238651_153238758_153239295_153239921_153241158
ENSMUSG00000042548.15_26	chr2	+	5173	2	ISM	ENSMUSG00000042548.15	ENSMUST00000109790.2	6968	13	51749	3	4734	-3	3prime_fragment	FALSE	canonical	3	143	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGTCTCCTTGTCATC	6957	False	NA	4	True	AATAAA	-13	NA	153239513	153245924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_153239921_153241158
ENSMUSG00000042548.15_28	chr2	+	3644	1	ISM	ENSMUSG00000042548.15	ENSMUST00000227428.2	6981	12	54532	3	7501	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGTCTCCTTGTCATC	668	False	NA	4	True	AATAAA	-13	NA	153242280	153245924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_153242300_153245900
ENSMUSG00000042549.11_2	chr11	-	1246	2	FSM	ENSMUSG00000042549.11	ENSMUST00000123544.2	1291	2	2	43	2	-43	multi-exon	FALSE	canonical	3	28	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	60822691	60811785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60812732_60822391
ENSMUSG00000042549.11_3	chr11	-	1229	2	NNC	ENSMUSG00000042549.11	novel	1291	2	NA	NA	10	-48	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAATAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	60822683	60811790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_60812728_60822391
ENSMUSG00000042557.15_26	chr9	+	4891	21	NIC	ENSMUSG00000042557.15	novel	5206	22	NA	NA	-5	-212	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	51.8689454298041	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACTGCTCTAGCTTCTTG	NA	False	NA	20	True	ATTAAA	-24	NA	56983654	57035436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_56983915_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ENSMUSG00000042557.15_28	chr9	+	5200	22	FSM	ENSMUSG00000042557.15	ENSMUST00000168678.8	5206	22	-4	10	-4	-10	multi-exon	FALSE	canonical	3	44	junction_1	78.0412705515297	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGGAAATAAGTAACATAAG	NA	False	NA	NA	False	AATAAA	-12	NA	56983655	57035638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_56983915_56988378_56988487_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ENSMUSG00000042557.15_29	chr9	+	4902	21	FSM	ENSMUSG00000042557.15	ENSMUST00000168177.8	5086	21	-30	214	-7	-212	multi-exon	FALSE	canonical	3	20	junction_18	80.3800970390059	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACTGCTCTAGCTTCTTG	NA	False	NA	20	True	ATTAAA	-24	NA	56983652	57035436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_56983915_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025456_57026376_57026472_57032452_57032661_57034431
ENSMUSG00000042557.15_3	chr9	+	4963	22	NIC	ENSMUSG00000042557.15	novel	4899	21	NA	NA	2	-10	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	80.3294520190322	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGGAAATAAGTAACATAAG	NA	False	NA	NA	False	AATAAA	-12	NA	56979325	57035638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_56979348_56988378_56988487_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ENSMUSG00000042557.15_5	chr9	+	4856	21	NIC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	0	-11	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	70.7226979123393	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGGAAATAAGTAACATAA	NA	False	NA	NA	False	AATAAA	-11	NA	56979323	57035637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_56979348_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ENSMUSG00000042557.15_72	chr9	+	2227	7	ISM	ENSMUSG00000042557.15	ENSMUST00000049169.6	4845	20	24294	10	-2586	-8	3prime_fragment	FALSE	canonical	3	329	junction_4	20.317616876877	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAATAAGTAACATAAGTC	NA	False	NA	NA	False	AATAAA	-14	NA	57018158	57035640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
ENSMUSG00000042557.15_79	chr9	+	1086	1	ISM	ENSMUSG00000042557.15	ENSMUST00000167715.8	4961	22	51931	12	13808	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGGAAATAAGTAACATAAG	NA	False	NA	NA	False	AATAAA	-12	NA	57034552	57035638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_57034600_57035600
ENSMUSG00000042558.17_2	chr4	-	1643	6	FSM	ENSMUSG00000042558.17	ENSMUST00000102617.5	1672	6	21	8	21	-3	multi-exon	FALSE	canonical	3	286	junction_3	41.9218320210365	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCCAGCATGTCCTGTT	7097	False	NA	NA	False	AATAAA	-12	NA	126215475	126209847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126210659_126211095_126211197_126211512_126211698_126211776_126211985_126212191_126212289_126215234
ENSMUSG00000042558.17_4	chr4	-	2037	4	FSM	ENSMUSG00000042558.17	ENSMUST00000128188.8	1826	4	-214	3	22	-3	multi-exon	FALSE	canonical	3	330	junction_1	27.3901847788988	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCCAGCATGTCCTGTT	7098	False	NA	NA	False	AATAAA	-12	NA	126215474	126209847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126210659_126211095_126211985_126212191_126212289_126215234
ENSMUSG00000042558.17_5	chr4	-	1729	5	NIC	ENSMUSG00000042558.17	novel	1672	6	NA	NA	17	0	intron_retention	FALSE	canonical	3	306	junction_2	36.0416425818802	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCATGTCCTGTTCCT	7093	False	NA	NA	False	AATAAA	-15	NA	126215479	126209844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126210659_126211095_126211197_126211512_126211985_126212191_126212289_126215234
ENSMUSG00000042569.14_0	chr11	+	1229	7	FSM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	41	283	-7	-283	multi-exon	FALSE	canonical	3	194	junction_1	30.3845721085919	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGTAGAAGAACCATGTAC	NA	False	NA	28	True	AATAAA	-25	NA	60721497	60748966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ENSMUSG00000042569.14_11	chr11	+	133	1	ISM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	27372	288	27324	-288	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTCACAGTAGAAGAACCA	NA	False	NA	23	True	AATAAA	-20	NA	60748828	60748961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60748800_60749000
ENSMUSG00000042569.14_2	chr11	+	3097	6	ISM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	27	294	-21	-294	intron_retention	FALSE	canonical	3	194	junction_1	27.7012635090893	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTCAGAGTTCACAGTAGAA	NA	False	NA	17	True	AATAAA	-14	NA	60721483	60748955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525
ENSMUSG00000042569.14_3	chr11	+	1218	7	NNC	ENSMUSG00000042569.14	novel	1553	7	NA	NA	26	-290	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	85.6536955160462	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGTTCACAGTAGAAGAAC	NA	False	NA	21	True	AATAAA	-18	NA	60721530	60748959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_60721587_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ENSMUSG00000042569.14_9	chr11	+	1164	6	ISM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	13539	283	13491	-283	3prime_fragment	FALSE	canonical	3	240	junction_3	17.0645832061612	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGTAGAAGAACCATGTAC	6504	False	NA	28	True	AATAAA	-25	NA	60734995	60748966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ENSMUSG00000042570.15_13	chr10	-	2752	14	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	-10	0	intron_retention	FALSE	canonical	3	9	junction_12	62.3803944318041	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79390935	79376078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385688_79386149_79386241_79390907
ENSMUSG00000042570.15_2	chr10	-	3041	13	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	-4	0	intron_retention	FALSE	canonical	3	111	junction_12	34.2502027569019	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTGTCTCATGGATTCC	NA	False	NA	-4	True	ATTAAA	-15	NA	79390929	79376079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79377034_79377347_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
ENSMUSG00000042570.15_3	chr10	-	2570	14	FSM	ENSMUSG00000042570.15	ENSMUST00000165028.8	2676	14	104	2	-4	-1	multi-exon	FALSE	canonical	3	111	junction_13	38.1023225308973	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGGTGTCTCATGGATTC	NA	False	NA	-5	True	ATTAAA	-14	NA	79390929	79376080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
ENSMUSG00000042570.15_42	chr10	-	2154	13	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	10	-5	intron_retention	FALSE	canonical	3	14	junction_1	63.0349880798134	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCGGGGTGTCTCATGG	NA	False	NA	-9	True	ATTAAA	-10	NA	79390938	79376084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79377034_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
ENSMUSG00000042570.15_6	chr10	-	2873	14	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	14	-1	intron_retention	FALSE	canonical	3	38	junction_13	53.1463314291654	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGGTGTCTCATGGATTC	NA	False	NA	-5	True	ATTAAA	-14	NA	79390704	79376080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390379
ENSMUSG00000042572.13_0	chr3	+	1826	13	FSM	ENSMUSG00000042572.13	ENSMUST00000038356.13	3077	13	-7	1258	-7	-2	multi-exon	TRUE	canonical	3	944	junction_1	76.7428968844819	1261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGCTGGTCTTGACTCA	NA	False	NA	21	True	AAAACA	-20	NA	89680915	89690049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89681346_89683383_89683489_89683818_89683924_89684537_89684589_89686735_89686877_89687061_89687147_89687743_89687805_89687993_89688085_89688195_89688255_89688353_89688403_89688674_89688771_89689077_89689145_89689563
ENSMUSG00000042579.3_1	chr3	-	4773	1	FSM	ENSMUSG00000042579.3	ENSMUST00000195940.2	4671	1	-435	333	14	-333	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAACAATAACAAGC	2652	False	NA	NA	False	NA	NA	NA	89680533	89675760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89675800_89680500
ENSMUSG00000042589.19_0	chr5	-	2558	1	ISM	ENSMUSG00000042589.19	ENSMUST00000111752.10	8784	23	188900	2028	5112	1822	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATAATCCTGGGTGTCCC	3340	False	NA	NA	False	AATACA	-8	NA	121999014	121996456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121996500_121999000
ENSMUSG00000042589.19_16	chr5	-	4844	22	NIC	ENSMUSG00000042589.19	novel	8784	23	NA	NA	-2	-28	combination_of_known_junctions	FALSE	canonical	0	0	junction_21	3.77844465235759	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAATAAAGGATCCTTT	NA	False	NA	NA	False	AATAAA	-27	NA	122188167	121998306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_121999445_122002709_122002984_122003914_122004104_122005153_122005424_122006507_122006680_122007070_122007844_122011112_122011215_122011719_122012365_122013141_122013242_122013349_122013399_122014892_122014952_122015030_122015223_122017877_122017983_122020835_122020885_122022069_122022137_122022809_122022887_122023900_122024022_122025416_122025552_122036339_122036419_122059376_122059425_122062867_122062979_122188078
ENSMUSG00000042589.19_23	chr5	-	2369	6	ISM	ENSMUSG00000042589.19	ENSMUST00000168288.9	4697	21	55620	-96	-3238	4	3prime_fragment	FALSE	canonical	3	5	junction_5	4.35430821141545	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCGATGCTGTTTTGATA	NA	False	NA	NA	False	AATAAA	-22	NA	122007364	121998274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121999445_122002709_122002984_122003914_122004104_122005153_122005424_122006507_122006680_122007070
ENSMUSG00000042589.19_4	chr5	-	4988	23	NIC	ENSMUSG00000042589.19	novel	8784	23	NA	NA	-45	-2	combination_of_known_splicesites	FALSE	canonical	1	5	junction_5	3.3016399631518	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCCAGCCGATGCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	122188210	121998280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_121999445_122002709_122002984_122003914_122004104_122005153_122005424_122006507_122006680_122007070_122007844_122011112_122011215_122011719_122012365_122013141_122013242_122013349_122013399_122014892_122014952_122015030_122015223_122017877_122017983_122020835_122020885_122022069_122022137_122022809_122022887_122023900_122024022_122025416_122025552_122036339_122036419_122059376_122059425_122062867_122062979_122181832_122181908_122188078
ENSMUSG00000042589.19_9	chr5	-	4193	15	ISM	ENSMUSG00000042589.19	ENSMUST00000168288.9	4697	21	40861	-86	-9736	-6	3prime_fragment	FALSE	canonical	2	5	junction_5	3.41141541035987	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATCCCCAGCCGATGC	NA	False	NA	NA	False	AATAAA	-12	NA	122022123	121998284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121999445_122002709_122002984_122003914_122004104_122005153_122005424_122006507_122006680_122007070_122007844_122011112_122011215_122011719_122012365_122013141_122013242_122013349_122013399_122014892_122014952_122015030_122015223_122017877_122017983_122020835_122020885_122022069
ENSMUSG00000042590.18_1	chr13	-	4285	30	FSM	ENSMUSG00000042590.18	ENSMUST00000080856.14	4325	30	34	6	21	2	multi-exon	FALSE	canonical	0	0	junction_13	115.519794104579	1032	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCACCTTTGACTTGTTG	NA	False	NA	-12	True	ATTAAA	-13	NA	107073432	106930952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
ENSMUSG00000042594.17_0	chr5	-	4233	8	FSM	ENSMUSG00000042594.17	ENSMUST00000040308.14	2530	8	22	-1725	-3	-3	multi-exon	FALSE	canonical	3	25	junction_7	11.8252583351856	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTACAACCATGATCTC	NA	False	NA	-23	True	ATTAAA	-10	NA	121974891	121953553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121974612
ENSMUSG00000042594.17_1	chr5	-	4036	8	NIC	ENSMUSG00000042594.17	novel	2530	8	NA	NA	-9	-3	intron_retention	FALSE	canonical	3	8	junction_7	16.67088382021	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTACAACCATGATCTC	NA	False	NA	-23	True	ATTAAA	-10	NA	121975718	121953553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121975636
ENSMUSG00000042594.17_10	chr5	-	3749	7	ISM	ENSMUSG00000042594.17	ENSMUST00000086310.8	4195	9	7991	-160	-127	0	3prime_fragment	FALSE	canonical	3	36	junction_5	8.73053390247253	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACAACCATGATCTCTGC	NA	False	NA	-20	True	ATTAAA	-13	NA	121966931	121953550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464
ENSMUSG00000042594.17_13	chr5	-	4116	7	NIC	ENSMUSG00000042594.17	novel	4313	7	NA	NA	-9	-3	intron_retention	FALSE	canonical	3	8	junction_6	16.86877457184	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTACAACCATGATCTC	NA	False	NA	-23	True	ATTAAA	-10	NA	121975718	121953553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_121956157_121956278_121956451_121956527_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121975636
ENSMUSG00000042594.17_2	chr5	-	4320	9	FSM	ENSMUSG00000042594.17	ENSMUST00000086310.8	4195	9	32	-157	-2	-3	multi-exon	FALSE	canonical	2	4	junction_8	20.0187412191676	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTACAACCATGATCTC	NA	False	NA	-23	True	ATTAAA	-10	NA	121974890	121953553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121970565_121970654_121974612
ENSMUSG00000042594.17_5	chr5	-	1213	1	ISM	ENSMUSG00000042594.17	ENSMUST00000136960.8	4313	7	20125	0	12041	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACAACCATGATCTCTGC	NA	False	NA	-20	True	ATTAAA	-13	NA	121954763	121953550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121953600_121954800
ENSMUSG00000042594.17_8	chr5	-	4315	7	FSM	ENSMUSG00000042594.17	ENSMUST00000136960.8	4313	7	-2	0	-2	0	multi-exon	FALSE	canonical	3	25	junction_6	11.6535640709422	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACAACCATGATCTCTGC	NA	False	NA	-20	True	ATTAAA	-13	NA	121974890	121953550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121956157_121956278_121956451_121956527_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121974612
ENSMUSG00000042595.8_0	chrX	+	8267	6	FSM	ENSMUSG00000042595.8	ENSMUST00000047852.8	8299	6	17	15	17	-15	multi-exon	FALSE	canonical	3	22	junction_5	9.32523458149981	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACTAAGTAAAACATGC	NA	False	NA	NA	False	AATAAA	-9	NA	135950359	135983237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_135950819_135963406_135963627_135972247_135972398_135972762_135972925_135974637_135974905_135976228
ENSMUSG00000042595.8_1	chrX	+	8227	7	NNC	ENSMUSG00000042595.8	novel	8299	6	NA	NA	18	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	15.0185071014251	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAAACATGCATGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	135950360	135983244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_135950819_135963406_135963627_135972247_135972398_135972762_135972925_135974637_135974905_135976228_135982773_135982818
ENSMUSG00000042595.8_3	chrX	+	4221	1	ISM	ENSMUSG00000042595.8	ENSMUST00000047852.8	8299	6	28681	8	28681	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAAACATGCATGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	135979023	135983244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_135979000_135983200
ENSMUSG00000042595.8_4	chrX	+	3746	2	NNC	ENSMUSG00000042595.8	novel	8299	6	NA	NA	29107	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAGTAAAACATGCATGT	NA	False	NA	NA	False	AATAAA	-13	NA	135979449	135983241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_135982773_135982818
ENSMUSG00000042599.9_0	chr6	-	3706	1	ISM	ENSMUSG00000042599.9	ENSMUST00000002305.9	9566	20	66360	101	14253	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTAGCACTCAGTGT	868	False	NA	-9	True	ATTAAA	-21	NA	39117363	39113657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_39113700_39117400
ENSMUSG00000042599.9_1	chr6	-	5106	13	ISM	ENSMUSG00000042599.9	ENSMUST00000002305.9	9566	20	40039	3250	-12068	2237	3prime_fragment	FALSE	canonical	3	12	junction_10	4.67484402591858	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	39143684	39116806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_39120240_39121225_39121494_39122402_39122489_39123788_39123998_39124121_39124271_39124637_39124736_39125875_39126031_39126220_39126346_39128191_39128402_39129746_39129837_39135147_39135240_39142030_39142138_39143600
ENSMUSG00000042599.9_10	chr6	-	4609	9	ISM	ENSMUSG00000042599.9	ENSMUST00000127036.2	3077	11	3339	-2237	3339	2237	3prime_fragment	FALSE	canonical	3	14	junction_3	3.83853813319602	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	39128277	39116806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_39120240_39121225_39121494_39122402_39122489_39123788_39123998_39124121_39124271_39124637_39124736_39125875_39126031_39126220_39126346_39128191
ENSMUSG00000042599.9_5	chr6	-	6309	20	FSM	ENSMUSG00000042599.9	ENSMUST00000002305.9	9566	20	6	3251	6	2236	multi-exon	FALSE	canonical	3	12	junction_10	4.65544092368336	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	39183717	39116807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_39120240_39121225_39121494_39122402_39122489_39123788_39123998_39124121_39124271_39124637_39124736_39125875_39126031_39126220_39126346_39128191_39128402_39129746_39129837_39135147_39135240_39142030_39142138_39143600_39143689_39145874_39146038_39147057_39147245_39147702_39147845_39150211_39150373_39152296_39152415_39158461_39158548_39183374
ENSMUSG00000042599.9_8	chr6	-	1631	1	ISM	ENSMUSG00000042599.9	ENSMUST00000002305.9	9566	20	65286	3250	13179	2237	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	39118437	39116806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_39116800_39118400
ENSMUSG00000042605.17_10	chr5	+	4005	23	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-22	-14	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	58.0259987326855	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTTAAAAACTGATACCC	871	False	NA	-11	True	NA	NA	NA	121849900	121952998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121952400
ENSMUSG00000042605.17_11	chr5	+	4065	24	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-22	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	71.1456611745913	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTGATACCCAGTTAG	871	False	NA	-5	True	NA	NA	NA	121849900	121953004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121952400
ENSMUSG00000042605.17_12	chr5	+	4174	24	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-22	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	57.6288233911142	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTGATACCCAGTTAG	871	False	NA	-5	True	NA	NA	NA	121849900	121953004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121951447_121951617_121952400
ENSMUSG00000042605.17_16	chr5	+	4232	25	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-32	-14	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	70.075703112182	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTTAAAAACTGATACCC	861	False	NA	-11	True	NA	NA	NA	121849890	121952998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121951447_121951617_121952400
ENSMUSG00000042605.17_30	chr5	+	4193	25	FSM	ENSMUSG00000042605.17	ENSMUST00000051950.14	4472	25	226	53	-25	-1	multi-exon	FALSE	canonical	0	0	junction_9	70.6657699432099	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAACTAAAAAAAA	868	False	NA	-49	True	NA	NA	NA	121849897	121952960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121951447_121951617_121952400
ENSMUSG00000042605.17_5	chr5	+	4063	24	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-32	-14	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	70.5151447085683	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTTAAAAACTGATACCC	861	False	NA	-11	True	NA	NA	NA	121849890	121952998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121952400
ENSMUSG00000042605.17_6	chr5	+	4015	23	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-32	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	57.0768837723033	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTGATACCCAGTTAG	861	False	NA	-5	True	NA	NA	NA	121849890	121953004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121952400
ENSMUSG00000042605.17_7	chr5	+	6766	22	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-58	-8	intron_retention	FALSE	canonical	0	0	junction_9	56.2918778351201	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTGATACCCAGTTAG	835	False	NA	-5	True	NA	NA	NA	121849864	121953004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121948913_121949060_121949447
ENSMUSG00000042605.17_9	chr5	+	4181	24	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-23	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	58.4990588520743	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTGATACCCAGTTAG	870	False	NA	-5	True	NA	NA	NA	121849899	121953004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121951447_121951617_121952400
ENSMUSG00000042606.10_27	chr7	+	1397	2	FSM	ENSMUSG00000042606.10	ENSMUST00000146120.2	431	2	-762	-204	-189	204	multi-exon	FALSE	canonical	3	266	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAAATTGGTCCCAAACC	3158	False	NA	46	True	AATAAA	-20	NA	126462825	126464294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126463834_126463905
ENSMUSG00000042606.10_3	chr7	+	2044	7	FSM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	467	255	0	204	multi-exon	FALSE	canonical	3	171	junction_2	39.0498257216199	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAAATTGGTCCCAAACC	1943	False	NA	46	True	AATAAA	-20	NA	126461610	126464294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
ENSMUSG00000042606.10_32	chr7	+	1371	4	ISM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	1562	255	-309	204	3prime_fragment	FALSE	canonical	3	257	junction_1	7.34846922834953	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAAATTGGTCCCAAACC	3038	False	NA	46	True	AATAAA	-20	NA	126462705	126464294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_126463423_126463491_126463658_126463734_126463834_126463905
ENSMUSG00000042606.10_5	chr7	+	2141	6	NIC	ENSMUSG00000042606.10	novel	2766	7	NA	NA	0	204	intron_retention	FALSE	canonical	3	200	junction_2	32.121021154378	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAAATTGGTCCCAAACC	1943	False	NA	46	True	AATAAA	-20	NA	126461610	126464294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_126461689_126461771_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
ENSMUSG00000042607.16_1	chr6	+	2448	3	ISM	ENSMUSG00000042607.16	ENSMUST00000043294.12	3286	6	40268	9	33227	-9	3prime_fragment	FALSE	canonical	2	3	junction_2	3.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAAAGCTCTGGCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	5423653	5433013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_5423833_5429739_5429854_5430858
ENSMUSG00000042608.16_3	chr4	+	3483	11	FSM	ENSMUSG00000042608.16	ENSMUST00000094761.11	3492	11	1	8	1	-7	multi-exon	TRUE	canonical	3	325	junction_5	16.9944108459223	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACCATGGTCTGTAGCC	NA	False	NA	14	True	AATAAA	-15	NA	125997765	126034814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_125997940_126017508_126017629_126018875_126018962_126019467_126019612_126022611_126022840_126023490_126023544_126028804_126028921_126030562_126030708_126030869_126030990_126031553_126031639_126032602
ENSMUSG00000042608.16_6	chr4	+	3274	12	NNC	ENSMUSG00000042608.16	novel	3860	13	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	104.66830726373	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACCATGGTCTGTAGCC	NA	False	NA	14	True	AATAAA	-15	NA	125997765	126034814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_125997940_126017508_126017629_126018875_126018962_126019467_126019612_126022611_126022840_126023490_126023544_126028804_126028921_126030562_126030708_126030869_126030990_126031553_126031639_126032602_126033732_126033940
ENSMUSG00000042613.10_1	chr3	+	2838	9	NIC	ENSMUSG00000042613.10	novel	4479	11	NA	NA	13	-2006	intron_retention	FALSE	canonical	3	58	junction_1	11.9687092035858	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	4390	False	NA	NA	False	NA	NA	NA	89344034	89356253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89344088_89346823_89346909_89350428_89350556_89350758_89350824_89350902_89351063_89352758_89353481_89353586_89353719_89354352_89355573_89355979
ENSMUSG00000042613.10_10	chr3	+	2592	11	NIC	ENSMUSG00000042613.10	novel	4479	11	NA	NA	5	-2006	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	25.7984495658169	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	4423	False	NA	NA	False	NA	NA	NA	89344067	89356253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89344262_89346823_89346909_89350428_89350556_89350758_89350824_89350902_89351063_89352758_89352987_89353098_89353123_89353397_89353481_89353586_89353719_89354352_89355573_89355979
ENSMUSG00000042613.10_17	chr3	+	2803	2	ISM	ENSMUSG00000042613.10	ENSMUST00000038942.10	4479	11	11026	11	10976	-11	3prime_fragment	FALSE	canonical	3	93	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTCCTCTAGCCTGGTT	NA	False	NA	24	True	AATAAA	-13	NA	89355038	89358248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_89355573_89355979
ENSMUSG00000042613.10_18	chr3	+	874	1	ISM	ENSMUSG00000042613.10	ENSMUST00000038942.10	4479	11	13362	11	13312	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTCCTCTAGCCTGGTT	NA	False	NA	24	True	AATAAA	-13	NA	89357374	89358248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_89357400_89358200
ENSMUSG00000042613.10_2	chr3	+	2435	11	FSM	ENSMUSG00000042613.10	ENSMUST00000038942.10	4479	11	38	2006	-10	-2006	multi-exon	FALSE	canonical	3	58	junction_1	11.4367827643966	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	4406	False	NA	NA	False	NA	NA	NA	89344050	89356253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89344088_89346823_89346909_89350428_89350556_89350758_89350824_89350902_89351063_89352758_89352987_89353098_89353123_89353397_89353481_89353586_89353719_89354352_89355573_89355979
ENSMUSG00000042613.10_3	chr3	+	2456	11	NIC	ENSMUSG00000042613.10	novel	4479	11	NA	NA	-10	-2006	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	22.5690052948729	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	4406	False	NA	NA	False	NA	NA	NA	89344050	89356253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89344088_89346823_89346909_89350407_89350556_89350758_89350824_89350902_89351063_89352758_89352987_89353098_89353123_89353397_89353481_89353586_89353719_89354352_89355573_89355979
ENSMUSG00000042616.9_0	chr4	+	1450	10	FSM	ENSMUSG00000042616.9	ENSMUST00000035497.5	5013	10	30	3533	-9	-2	multi-exon	FALSE	canonical	3	15	junction_8	4.26296135405575	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACCTTCCCCATTATTC	2393	False	NA	5	True	AATATA	-15	NA	125952387	125982455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_125952586_125967597_125967753_125970509_125970678_125971128_125971210_125976674_125976779_125977388_125977518_125978185_125978256_125980335_125980476_125981498_125981563_125982114
ENSMUSG00000042622.15_0	chr15	+	1945	3	FSM	ENSMUSG00000042622.15	ENSMUST00000096350.11	1958	3	9	4	9	0	multi-exon	FALSE	canonical	3	18	junction_1	7	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGAGAAGTGTATGTCTT	2274	False	NA	18	True	AATAAA	-19	NA	79231728	79243272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79231955_79241166_79241234_79241620
ENSMUSG00000042622.15_3	chr15	+	1942	3	FSM	ENSMUSG00000042622.15	ENSMUST00000163691.3	1902	3	-38	-2	-38	2	multi-exon	FALSE	canonical	3	16	junction_1	8	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGAAGTGTATGTCTTGG	2771	False	NA	20	True	AATAAA	-21	NA	79232225	79243274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79232447_79241166_79241234_79241620
ENSMUSG00000042625.17_13	chr17	-	2328	15	ISM	ENSMUSG00000042625.17	ENSMUST00000075510.12	3277	21	8755	7	-311	3	3prime_fragment	FALSE	canonical	3	78	junction_14	46.6881206758732	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACAAGGTTTCTGCTGCC	1026	False	NA	-5	True	AATAAA	-24	NA	56882830	56869945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56870244_56870361_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56882354
ENSMUSG00000042625.17_3	chr17	-	3355	20	NIC	ENSMUSG00000042625.17	novel	3277	21	NA	NA	9	2	intron_retention	FALSE	canonical	3	72	junction_14	53.7949322598524	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACAAGGTTTCTGCTGC	NA	False	NA	-6	True	AATAAA	-23	NA	56891553	56869946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56882354_56883013_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
ENSMUSG00000042625.17_4	chr17	-	3245	21	FSM	ENSMUSG00000042625.17	ENSMUST00000075510.12	3277	21	25	7	2	3	multi-exon	FALSE	canonical	3	72	junction_15	52.6718852899723	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACAAGGTTTCTGCTGCC	NA	False	NA	-5	True	AATAAA	-24	NA	56891560	56869945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56870244_56870361_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56882354_56883013_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
ENSMUSG00000042626.14_11	chr3	+	2942	12	NIC	ENSMUSG00000042626.14	novel	3250	13	NA	NA	11	-1	combination_of_known_junctions	TRUE	canonical	3	123	junction_1	129.584906273394	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCGGCCTCTCAACTCCT	NA	False	NA	19	True	ATTAAA	-16	NA	89325888	89337321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89326017_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ENSMUSG00000042626.14_3	chr3	+	3110	13	FSM	ENSMUSG00000042626.14	ENSMUST00000107417.9	3079	13	-32	1	11	-1	multi-exon	FALSE	canonical	3	256	junction_1	89.6222008705928	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCGGCCTCTCAACTCCT	NA	False	NA	19	True	ATTAAA	-16	NA	89325888	89337321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89326017_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ENSMUSG00000042626.14_35	chr3	+	3530	12	FSM	ENSMUSG00000042626.14	ENSMUST00000094378.10	2617	12	2	-915	2	-1	multi-exon	FALSE	canonical	3	501	junction_1	37.6308735565373	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCGGCCTCTCAACTCCT	NA	False	NA	19	True	ATTAAA	-16	NA	89328936	89337321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ENSMUSG00000042628.9_0	chr12	-	3841	12	NNC	ENSMUSG00000042628.9	novel	4036	12	NA	NA	-9251	-27	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	37.1632538674499	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAAATAATT	NA	False	NA	NA	False	NA	NA	NA	83653247	83593649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83653189
ENSMUSG00000042628.9_1	chr12	-	3942	12	FSM	ENSMUSG00000042628.9	ENSMUST00000048319.6	4036	12	63	31	-45	-31	multi-exon	FALSE	canonical	3	46	junction_11	24.5928834697229	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	83643933	83593653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83643770
ENSMUSG00000042628.9_13	chr12	-	3211	11	ISM	ENSMUSG00000042628.9	ENSMUST00000048319.6	4036	12	2413	86	878	-86	3prime_fragment	FALSE	canonical	3	101	junction_10	9.82293235240883	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAAAAAATCTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	83641583	83593708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171
ENSMUSG00000042628.9_2	chr12	-	2930	11	NNC	ENSMUSG00000042628.9	novel	4036	12	NA	NA	-9251	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	38.7479031690748	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTTTAAAAAGCTTGGC	NA	False	NA	NA	False	NA	NA	NA	83653247	83593635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83653189
ENSMUSG00000042628.9_4	chr12	-	3932	12	NNC	ENSMUSG00000042628.9	novel	4036	12	NA	NA	-32	-24	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_11	34.1123568895786	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATAATTTTA	NA	False	NA	NA	False	NA	NA	NA	83643920	83593646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642093_83643770
ENSMUSG00000042628.9_7	chr12	-	2633	10	ISM	ENSMUSG00000042628.9	ENSMUST00000048319.6	4036	12	22325	13	-12437	-13	3prime_fragment	FALSE	canonical	3	116	junction_6	5.95870563457419	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTTTAAAAAGCTTGGC	NA	False	NA	NA	False	NA	NA	NA	83621671	83593635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405
ENSMUSG00000042632.18_15	chr15	-	3157	18	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	-7	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	55.3629733985577	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTCATTGTACAGT	NA	False	NA	-16	True	AATAAA	-10	NA	79212383	79170433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834_79211915_79212288
ENSMUSG00000042632.18_2	chr15	-	2853	16	NIC	ENSMUSG00000042632.18	novel	2943	17	NA	NA	9	-1	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	51.8533830461748	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTCATTGTACAGTG	NA	False	NA	-15	True	AATAAA	-11	NA	79212444	79170432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
ENSMUSG00000042632.18_4	chr15	-	3365	16	FSM	ENSMUSG00000042632.18	ENSMUST00000166977.9	3365	16	-6	6	-6	-2	multi-exon	FALSE	canonical	3	30	junction_8	51.9652020319581	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTCATTGTACAGT	NA	False	NA	-16	True	AATAAA	-10	NA	79212382	79170433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
ENSMUSG00000042632.18_5	chr15	-	2933	16	FSM	ENSMUSG00000042632.18	ENSMUST00000047816.15	2963	16	26	4	1	0	multi-exon	FALSE	canonical	0	0	junction_15	63.160817671155	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTTCATTGTACAGTGT	NA	False	NA	-14	True	AATAAA	-12	NA	79212402	79170431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
ENSMUSG00000042632.18_6	chr15	-	3526	17	FSM	ENSMUSG00000042632.18	ENSMUST00000174021.8	3318	17	-212	4	0	0	multi-exon	FALSE	canonical	3	78	junction_16	39.721638860324	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTTCATTGTACAGTGT	NA	False	NA	-14	True	AATAAA	-12	NA	79212376	79170431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
ENSMUSG00000042632.18_7	chr15	-	3088	17	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	9	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	53.1124617556935	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTCATTGTACAGT	NA	False	NA	-16	True	AATAAA	-10	NA	79212394	79170433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
ENSMUSG00000042632.18_8	chr15	-	2956	16	ISM	ENSMUSG00000042632.18	ENSMUST00000174021.8	3318	17	9984	2	32	-2	3prime_fragment	FALSE	canonical	3	123	junction_9	33.0897768704072	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCATTGTACAGTGTGT	NA	False	NA	-12	True	AATAAA	-14	NA	79202180	79170429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960
ENSMUSG00000042632.18_9	chr15	-	3018	17	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	8	-2	combination_of_known_junctions	FALSE	canonical	3	79	junction_16	39.5790348543266	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTCATTGTACAGT	NA	False	NA	-16	True	AATAAA	-10	NA	79212445	79170433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
ENSMUSG00000042638.15_0	chr6	-	3564	25	ISM	ENSMUSG00000042638.15	ENSMUST00000032338.10	3959	27	11541	1	11518	0	3prime_fragment	TRUE	canonical	0	0	junction_1	0.695970545353753	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTGTCTCTTCTGCCT	NA	False	NA	NA	False	AATAAA	-15	NA	136747222	136674282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_136675038_136676473_136676551_136679690_136679786_136681210_136681310_136685238_136685414_136686635_136686829_136690043_136690203_136692951_136693044_136696641_136696728_136697673_136697812_136699409_136699543_136700715_136700803_136704802_136704908_136705328_136705401_136706166_136706230_136714354_136714461_136717607_136717690_136720913_136721026_136725776_136725863_136727916_136728053_136737651_136737770_136739995_136740093_136742603_136742726_136743986_136744203_136747062
ENSMUSG00000042642.14_1	chr3	-	1774	8	FSM	ENSMUSG00000042642.14	ENSMUST00000129308.9	2892	8	3	1115	3	-417	multi-exon	FALSE	canonical	3	214	junction_7	45.7504321380282	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTGGTGCCTGTTGCT	3747	False	NA	-17	True	AGTAAA	-16	NA	89319167	89310390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319090
ENSMUSG00000042642.14_14	chr3	-	1812	8	FSM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	9	417	3	-417	multi-exon	FALSE	canonical	3	53	junction_7	99.0019583397321	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTGGTGCCTGTTGCT	3747	False	NA	-17	True	AGTAAA	-16	NA	89319167	89310390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319052
ENSMUSG00000042642.14_20	chr3	-	1974	8	NIC	ENSMUSG00000042642.14	novel	2238	8	NA	NA	26	-417	combination_of_known_junctions	FALSE	canonical	2	9	junction_7	114.072300739129	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTGGTGCCTGTTGCT	3770	False	NA	-17	True	AGTAAA	-16	NA	89319144	89310390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89318867
ENSMUSG00000042642.14_5	chr3	-	1749	8	NIC	ENSMUSG00000042642.14	novel	2238	8	NA	NA	1	-416	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	105.155666921542	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTTGGTGCCTGTTGCTC	3739	False	NA	-16	True	AGTAAA	-17	NA	89319175	89310389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319124
ENSMUSG00000042642.14_9	chr3	-	1195	6	ISM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	2983	416	2895	-416	3prime_fragment	FALSE	canonical	3	278	junction_4	25.6780061531265	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTTGGTGCCTGTTGCTC	6721	False	NA	-16	True	AGTAAA	-17	NA	89316193	89310389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728
ENSMUSG00000042644.10_1	chr17	+	8967	58	FSM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	16	7	16	-7	multi-exon	TRUE	canonical	0	0	junction_18	48.4846455023872	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCATCCACAGGGTCAT	NA	False	NA	9	True	AATAAA	-13	NA	27276293	27341190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27276649_27292071_27292143_27302503_27302626_27304062_27304150_27305812_27305972_27306119_27306219_27306564_27306649_27307925_27308073_27308235_27308332_27308589_27308641_27308803_27308947_27310284_27310385_27310466_27310628_27310787_27310930_27312148_27312311_27313768_27313942_27314437_27314558_27314860_27315044_27316935_27317188_27317287_27317433_27317947_27318090_27318573_27318774_27320078_27320209_27320556_27320615_27321740_27321907_27322806_27322972_27323047_27323123_27323498_27323625_27324467_27324591_27325179_27325381_27326203_27326456_27326583_27326710_27326790_27326917_27329453_27329575_27329804_27329996_27330171_27330321_27330437_27330547_27330638_27330730_27330830_27331001_27332464_27332640_27332717_27332900_27333053_27333255_27333368_27333480_27333820_27333917_27334001_27334104_27334188_27334276_27334646_27334758_27334859_27335053_27335145_27335272_27335582_27335756_27336139_27336305_27336706_27336900_27337330_27337436_27337518_27337647_27338188_27338355_27338841_27339003_27339904_27340067_27340433
ENSMUSG00000042644.10_48	chr17	+	4876	29	ISM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	48962	1	89	-1	3prime_fragment	FALSE	canonical	3	147	junction_2	28.8194591290294	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCACAGGGTCATACTTCT	43	False	NA	15	True	AATAAA	-19	NA	27325239	27341196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27325381_27326203_27326456_27326583_27326710_27326790_27326917_27329453_27329575_27329804_27329996_27330171_27330321_27330437_27330547_27330638_27330730_27330830_27331001_27332464_27332640_27332717_27332900_27333053_27333255_27333368_27333480_27333820_27333917_27334001_27334104_27334188_27334276_27334646_27334758_27334859_27335053_27335145_27335272_27335582_27335756_27336139_27336305_27336706_27336900_27337330_27337436_27337518_27337647_27338188_27338355_27338841_27339003_27339904_27340067_27340433
ENSMUSG00000042644.10_53	chr17	+	4633	28	ISM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	50022	7	1149	-7	3prime_fragment	FALSE	canonical	3	147	junction_1	28.6394262382083	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCATCCACAGGGTCAT	905	False	NA	9	True	AATAAA	-13	NA	27326299	27341190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27326456_27326583_27326710_27326790_27326917_27329453_27329575_27329804_27329996_27330171_27330321_27330437_27330547_27330638_27330730_27330830_27331001_27332464_27332640_27332717_27332900_27333053_27333255_27333368_27333480_27333820_27333917_27334001_27334104_27334188_27334276_27334646_27334758_27334859_27335053_27335145_27335272_27335582_27335756_27336139_27336305_27336706_27336900_27337330_27337436_27337518_27337647_27338188_27338355_27338841_27339003_27339904_27340067_27340433
ENSMUSG00000042644.10_68	chr17	+	3509	20	ISM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	54608	7	5735	-7	3prime_fragment	FALSE	canonical	3	169	junction_1	24.8787642094067	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCATCCACAGGGTCAT	5491	False	NA	9	True	AATAAA	-13	NA	27330885	27341190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27331001_27332464_27332640_27332717_27332900_27333053_27333255_27333368_27333480_27333820_27333917_27334001_27334104_27334188_27334276_27334646_27334758_27334859_27335053_27335145_27335272_27335582_27335756_27336139_27336305_27336706_27336900_27337330_27337436_27337518_27337647_27338188_27338355_27338841_27339003_27339904_27340067_27340433
ENSMUSG00000042644.10_72	chr17	+	3152	18	ISM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	56507	7	7634	-7	3prime_fragment	FALSE	canonical	3	179	junction_3	22.2460291546332	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCATCCACAGGGTCAT	7390	False	NA	9	True	AATAAA	-13	NA	27332784	27341190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27332900_27333053_27333255_27333368_27333480_27333820_27333917_27334001_27334104_27334188_27334276_27334646_27334758_27334859_27335053_27335145_27335272_27335582_27335756_27336139_27336305_27336706_27336900_27337330_27337436_27337518_27337647_27338188_27338355_27338841_27339003_27339904_27340067_27340433
ENSMUSG00000042644.10_73	chr17	+	2936	17	ISM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	56877	7	8004	-7	3prime_fragment	FALSE	canonical	3	179	junction_2	21.4715473068431	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCATCCACAGGGTCAT	7760	False	NA	9	True	AATAAA	-13	NA	27333154	27341190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27333255_27333368_27333480_27333820_27333917_27334001_27334104_27334188_27334276_27334646_27334758_27334859_27335053_27335145_27335272_27335582_27335756_27336139_27336305_27336706_27336900_27337330_27337436_27337518_27337647_27338188_27338355_27338841_27339003_27339904_27340067_27340433
ENSMUSG00000042647.14_0	chr5	-	1682	1	ISM	ENSMUSG00000042647.14	ENSMUST00000041252.13	3881	11	20479	3	-480	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACTTGCTTCTTGATCAT	NA	False	NA	-3	True	NA	NA	NA	121736522	121734840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121734800_121736500
ENSMUSG00000042647.14_10	chr5	-	2347	11	FSM	ENSMUSG00000042647.14	ENSMUST00000041252.13	3881	11	31	1503	31	-1373	multi-exon	FALSE	canonical	3	24	junction_8	9.91413132856328	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGGCATCTATGGCTTT	NA	False	NA	NA	False	GATAAA	-19	NA	121756970	121736340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
ENSMUSG00000042647.14_14	chr5	-	2155	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	3	-1486	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.4723660405907	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAATCTGTCTACTTCCT	NA	False	NA	-4	True	NA	NA	NA	121756998	121736453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752350_121756833
ENSMUSG00000042647.14_8	chr5	-	2252	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	-4	-1369	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	13.7846483061999	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATCTATGGCTTTCCCA	NA	False	NA	NA	False	GATAAA	-23	NA	121757005	121736336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
ENSMUSG00000042647.14_9	chr5	-	2139	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	-5	-1373	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.3110265396406	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGGCATCTATGGCTTT	NA	False	NA	NA	False	GATAAA	-19	NA	121757006	121736340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756943
ENSMUSG00000042650.4_0	chr11	+	3086	4	FSM	ENSMUSG00000042650.4	ENSMUST00000044250.4	5730	4	37	2607	37	1538	multi-exon	FALSE	canonical	3	390	junction_2	6.48074069840786	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTTGTCTGATGCTGT	NA	False	NA	13	True	AATAAA	-22	NA	60428840	60446731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60430022_60438513_60438595_60444539_60444696_60445063
ENSMUSG00000042650.4_16	chr11	+	3203	1	ISM	ENSMUSG00000042650.4	ENSMUST00000044250.4	5730	4	17325	7	17325	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTAATTTCACCTGTTTG	1818	False	NA	-3	True	NA	NA	NA	60446128	60449331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60446100_60449300
ENSMUSG00000042659.16_0	chr7	-	2046	1	ISM	ENSMUSG00000042659.16	ENSMUST00000048068.15	3905	8	10196	5	10143	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGATCTGGGTGGCTCAT	NA	False	NA	-8	True	AATAAA	-11	NA	68388793	68386747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_68386700_68388800
ENSMUSG00000042659.16_1	chr7	-	3871	8	FSM	ENSMUSG00000042659.16	ENSMUST00000048068.15	3905	8	29	5	-24	-5	multi-exon	FALSE	canonical	3	375	junction_1	213.33809518495	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGATCTGGGTGGCTCAT	NA	False	NA	-8	True	AATAAA	-11	NA	68398960	68386747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_68389282_68389632_68389788_68390702_68390866_68391392_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
ENSMUSG00000042659.16_18	chr7	-	1064	5	FSM	ENSMUSG00000042659.16	ENSMUST00000118110.3	1129	5	-28	93	25	-93	multi-exon	FALSE	canonical	3	754	junction_4	68.2289344779764	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCAAGCCATGCGATTG	NA	False	NA	-24	True	ATTAAA	-15	NA	68398964	68391351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
ENSMUSG00000042660.9_0	chr18	+	1486	7	FSM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	33	100	33	-100	multi-exon	FALSE	canonical	3	263	junction_5	28.487814158962	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAAACCATGTAAG	NA	False	NA	-96	True	AATAAA	-11	NA	36893305	36896763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901_36896072_36896144
ENSMUSG00000042660.9_1	chr18	+	1564	6	NIC	ENSMUSG00000042660.9	novel	1619	7	NA	NA	44	-102	intron_retention	FALSE	canonical	3	317	junction_1	13.2574507353412	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAACAAAAACCATGTA	NA	False	NA	-98	True	AATAAA	-9	NA	36893316	36896761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36896072_36896144
ENSMUSG00000042670.6_0	chr2	+	771	7	FSM	ENSMUSG00000042670.6	ENSMUST00000037499.6	955	7	43	141	43	-141	multi-exon	FALSE	canonical	3	400	junction_1	38.970073988468	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTATTTATGTTTTAAA	NA	False	NA	13	True	AATAAA	-14	NA	105735025	105795762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_105735076_105738668_105738775_105761063_105761198_105763609_105763699_105767336_105767464_105794524_105794636_105795608
ENSMUSG00000042670.6_1	chr2	+	637	6	NIC	ENSMUSG00000042670.6	novel	955	7	NA	NA	43	-141	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	170.067516004674	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTATTTATGTTTTAAA	NA	False	NA	13	True	AATAAA	-14	NA	105735025	105795762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_105735076_105738668_105738775_105763609_105763699_105767336_105767464_105794524_105794636_105795608
ENSMUSG00000042675.16_0	chr7	+	948	5	FSM	ENSMUSG00000042675.16	ENSMUST00000038614.12	973	5	20	5	0	-2	multi-exon	FALSE	canonical	3	187	junction_2	12.73528562695	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAGCCCCTGGCTCACAT	8241	False	NA	12	True	AATAAA	-13	NA	126376146	126379681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126376276_126376942_126377126_126377225_126377270_126377477_126377587_126379198
ENSMUSG00000042675.16_1	chr7	+	1621	4	FSM	ENSMUSG00000042675.16	ENSMUST00000106357.8	1594	4	-33	6	-7	-3	multi-exon	FALSE	canonical	3	187	junction_1	13.6381816969859	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACAGCCCCTGGCTCACA	8234	False	NA	11	True	AATAAA	-12	NA	126376139	126379680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126377126_126377225_126377270_126377477_126377587_126379198
ENSMUSG00000042675.16_2	chr7	+	1161	4	NIC	ENSMUSG00000042675.16	novel	973	5	NA	NA	-7	-4	intron_retention	FALSE	canonical	3	187	junction_2	14.7044966667419	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACAGCCCCTGGCTCAC	8234	False	NA	10	True	AATAAA	-11	NA	126376139	126379679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_126376276_126376942_126377126_126377225_126377587_126379198
ENSMUSG00000042675.16_3	chr7	+	887	4	NIC	ENSMUSG00000042675.16	novel	973	5	NA	NA	-1	-20	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	89.6449787897918	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAACAATGGAATGGAG	8240	False	NA	-6	True	NA	NA	NA	126376145	126379663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_126376276_126376942_126377126_126377477_126377587_126379198
ENSMUSG00000042677.8_0	chr4	-	2760	6	FSM	ENSMUSG00000042677.8	ENSMUST00000036188.8	2755	6	-28	23	-28	-23	multi-exon	FALSE	canonical	2	13	junction_5	0.748331477354788	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGAAATTTAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125021661	125012238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_125013938_125014118_125014226_125014664_125014900_125016046_125016187_125020398_125020876_125021559
ENSMUSG00000042677.8_1	chr4	-	1964	3	ISM	ENSMUSG00000042677.8	ENSMUST00000131685.2	660	4	1483	-1640	1483	-31	3prime_fragment	FALSE	canonical	2	14	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAGAGAAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	125014830	125012246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_125013938_125014118_125014226_125014664
ENSMUSG00000042677.8_3	chr4	-	2256	5	NIC	ENSMUSG00000042677.8	novel	2755	6	NA	NA	11	-11	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	5.93190525885234	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAAAGCTATTGCC	NA	False	NA	NA	False	TTTAAA	-1	NA	125021622	125012226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_125013938_125014118_125014226_125014664_125014900_125016046_125016187_125021559
ENSMUSG00000042677.8_4	chr4	-	980	1	ISM	ENSMUSG00000042677.8	ENSMUST00000036188.8	2755	6	8429	9	3109	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGCTATTGCCAG	NA	False	NA	NA	False	TTTAAA	-3	NA	125013204	125012224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_125012200_125013200
ENSMUSG00000042677.8_5	chr4	-	2255	5	ISM	ENSMUSG00000042677.8	ENSMUST00000036188.8	2755	6	984	200	984	-200	3prime_fragment	FALSE	canonical	2	14	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAGATGGCTCAGTGGT	NA	False	NA	NA	False	AATAAA	-19	NA	125020649	125012415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_125013938_125014118_125014226_125014664_125014900_125016046_125016187_125020398
ENSMUSG00000042680.9_0	chr18	-	3634	6	FSM	ENSMUSG00000042680.9	ENSMUST00000049260.7	4923	6	1	1288	1	-2	multi-exon	FALSE	canonical	1	3	junction_2	4.12795348811006	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21433194	21261545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_21263080_21264389_21264557_21280788_21281962_21301792_21301924_21369057_21369199_21432706
ENSMUSG00000042682.11_0	chr14	+	723	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	132	823	4	-1	multi-exon	FALSE	canonical	3	836	junction_3	72.5443829665674	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGTTTGGTTGGTTTT	NA	False	NA	10	True	AATAAA	-21	NA	29690396	29696796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
ENSMUSG00000042684.9_0	chr1	-	1403	12	FSM	ENSMUSG00000042684.9	ENSMUST00000041874.9	1735	12	331	1	-3	-1	multi-exon	FALSE	canonical	3	88	junction_4	13.2309429459759	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTTATTGTCTTAATCT	NA	False	NA	-17	True	AATAAA	-19	NA	153425460	153378761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_153379304_153384857_153384898_153388291_153388377_153390985_153391033_153391147_153391297_153394628_153394722_153400092_153400169_153403810_153403869_153411617_153411706_153413173_153413248_153421008_153421093_153425393
ENSMUSG00000042684.9_8	chr1	-	1187	9	ISM	ENSMUSG00000042684.9	ENSMUST00000041874.9	1735	12	14076	2	13742	-2	3prime_fragment	FALSE	canonical	3	88	junction_4	13.5686909832894	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCACTTATTGTCTTAATC	3431	False	NA	-18	True	AATAAA	-18	NA	153411715	153378762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_153379304_153384857_153384898_153388291_153388377_153390985_153391033_153391147_153391297_153394628_153394722_153400092_153400169_153403810_153403869_153411617
ENSMUSG00000042686.6_0	chr1	-	4728	6	NNC	ENSMUSG00000042686.6	novel	4809	5	NA	NA	23	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	6.29285308902091	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATTGGAAGTGTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	17168090	17065168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_17066741_17066791_17067784_17074114_17074759_17086262_17086382_17161521_17162282_17167449
ENSMUSG00000042686.6_10	chr1	-	2754	2	ISM	ENSMUSG00000042686.6	ENSMUST00000038382.5	4809	5	0	95030	0	-95030	5prime_fragment	FALSE	canonical	3	16	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTAGC	NA	False	NA	NA	False	NA	NA	NA	17168113	17160191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_17162282_17167449
ENSMUSG00000042686.6_3	chr1	-	4336	7	NNC	ENSMUSG00000042686.6	novel	4809	5	NA	NA	-8	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6.84754619472471	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATTGGAAGTGTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	17168121	17065168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_17066741_17066791_17067265_17067687_17067784_17074114_17074759_17086262_17086382_17161521_17162282_17167449
ENSMUSG00000042688.17_0	chr9	-	1630	1	Genic_Genomic	ENSMUSG00000042688.17	novel	NA	NA	NA	NA	491	3	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGCTCAGTCTTTTAGA	NA	False	NA	-43	True	AATAAA	-21	NA	75295810	75294180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_-_75294200_75295800
ENSMUSG00000042688.17_1	chr9	-	3326	5	ISM	ENSMUSG00000042688.17	ENSMUST00000168937.8	4089	6	11233	-20	-519	20	3prime_fragment	FALSE	canonical	3	287	junction_2	15.7003184681076	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTTTGTTTTGTCTGTTT	NA	False	NA	-26	True	AATAAA	-38	NA	75305408	75294163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860
ENSMUSG00000042688.17_2	chr9	-	4082	6	FSM	ENSMUSG00000042688.17	ENSMUST00000049355.11	4072	6	-5	-5	-5	3	multi-exon	FALSE	canonical	3	266	junction_5	19.2727787306346	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGCTCAGTCTTTTAGA	NA	False	NA	-43	True	AATAAA	-21	NA	75317292	75294180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75317144
ENSMUSG00000042688.17_4	chr9	-	4087	6	NIC	ENSMUSG00000042688.17	novel	4089	6	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_5	102.565881266628	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCACTGCTCAGTCTTTT	NA	False	NA	-46	True	AATAAA	-18	NA	75317292	75294183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75317136
ENSMUSG00000042694.18_0	chr19	-	1931	10	FSM	ENSMUSG00000042694.18	ENSMUST00000049369.16	1992	10	46	15	21	-10	multi-exon	FALSE	canonical	3	124	junction_2	7.26907877057606	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCTTGGCATTTCAATTC	NA	False	NA	-25	True	AATAAA	-12	NA	47525512	47489486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
ENSMUSG00000042694.18_15	chr19	-	1975	5	FSM	ENSMUSG00000042694.18	ENSMUST00000182431.8	558	5	-118	-1299	12	1299	multi-exon	TRUE	canonical	1	2	junction_1	57.4429064376099	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTGTGGATGTTACAT	NA	False	NA	NA	False	AATAAA	-12	NA	47525521	47509271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_47510637_47513125_47513195_47517075_47517172_47524634_47524811_47525252
ENSMUSG00000042694.18_18	chr19	-	743	2	FSM	ENSMUSG00000042694.18	ENSMUST00000182714.2	690	2	-2	-51	-2	51	multi-exon	FALSE	canonical	3	136	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGCTTAAGGTATTCC	NA	False	NA	NA	False	ACTAAA	-4	NA	47525487	47524302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_47524811_47525252
ENSMUSG00000042694.18_2	chr19	-	1754	10	NIC	ENSMUSG00000042694.18	novel	1992	10	NA	NA	-11	-10	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	41.1369288301916	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCTTGGCATTTCAATTC	NA	False	NA	-25	True	AATAAA	-12	NA	47525496	47489486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525413
ENSMUSG00000042699.12_0	chr1	-	4596	28	FSM	ENSMUSG00000042699.12	ENSMUST00000042141.12	4616	28	10	10	1	-10	multi-exon	FALSE	canonical	3	83	junction_24	29.9642219210858	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAATTGATTGTGTCA	NA	False	NA	-11	True	AATAAA	-8	NA	153363396	153331513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
ENSMUSG00000042699.12_1	chr1	-	509	1	ISM	ENSMUSG00000042699.12	ENSMUST00000186380.7	4561	28	31334	8	21865	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATTGATTGTGTCATT	1004	False	NA	-9	True	AATAAA	-10	NA	153332020	153331511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_153331500_153332000
ENSMUSG00000042699.12_5	chr1	-	4593	28	FSM	ENSMUSG00000042699.12	ENSMUST00000186380.7	4561	28	-42	10	1	-10	multi-exon	TRUE	canonical	3	12	junction_24	37.4089841985242	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAATTGATTGTGTCA	NA	False	NA	-11	True	AATAAA	-8	NA	153363396	153331513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354725_153356877_153356996_153358487_153358629_153359485_153359619_153363278
ENSMUSG00000042700.17_1	chr12	+	6273	25	NIC	ENSMUSG00000042700.17	novel	6179	24	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_3	32.3541331294095	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGAATGTCTTTATTT	NA	False	NA	18	True	NA	NA	NA	82216177	82497045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_82216278_82216789_82216851_82281236_82281303_82312730_82312800_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
ENSMUSG00000042700.17_10	chr12	+	6183	24	NIC	ENSMUSG00000042700.17	novel	8215	23	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_3	21.8092781282731	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGAATGTCTTTATTT	NA	False	NA	18	True	NA	NA	NA	82216198	82497045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_82216278_82216789_82216851_82281236_82281303_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
ENSMUSG00000042700.17_13	chr12	+	6146	25	NNC	ENSMUSG00000042700.17	novel	8215	23	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	35.1780194945019	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTGAATGTCTTTAT	NA	False	NA	16	True	NA	NA	NA	82216197	82497043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_82216278_82216789_82216851_82281236_82281303_82358122_82358184_82387435_82387497_82387532_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
ENSMUSG00000042700.17_37	chr12	+	6375	23	FSM	ENSMUSG00000042700.17	ENSMUST00000166429.9	8215	23	324	1516	268	-1	multi-exon	FALSE	canonical	3	101	junction_2	20.7113176231246	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGTGAATGTCTTTATT	NA	False	NA	17	True	NA	NA	NA	82216517	82497044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_82216851_82281236_82281303_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
ENSMUSG00000042700.17_44	chr12	+	4819	20	ISM	ENSMUSG00000042700.17	ENSMUST00000053969.7	7488	21	30409	1512	-509	-1	3prime_fragment	FALSE	canonical	3	117	junction_1	18.1124526729059	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGTGAATGTCTTTATT	NA	False	NA	17	True	NA	NA	NA	82388531	82497044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
ENSMUSG00000042700.17_56	chr12	+	2982	14	ISM	ENSMUSG00000042700.17	ENSMUST00000053969.7	7488	21	85181	1513	-24085	-2	3prime_fragment	FALSE	canonical	3	123	junction_3	17.9694020012916	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTGAATGTCTTTAT	NA	False	NA	16	True	NA	NA	NA	82443303	82497043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
ENSMUSG00000042705.10_0	chr18	+	1554	7	FSM	ENSMUSG00000042705.10	ENSMUST00000049388.9	1610	7	49	7	0	-7	multi-exon	FALSE	canonical	3	1216	junction_3	103.11913282973	1191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAACTCAAGCGTACAA	NA	False	NA	19	True	AATAAA	-20	NA	47091931	47221055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094
ENSMUSG00000042705.10_1	chr18	+	1399	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234280.2	600	6	-11	-788	-1	-7	multi-exon	FALSE	canonical	3	187	junction_3	477.712298355401	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAACTCAAGCGTACAA	NA	False	NA	19	True	AATAAA	-20	NA	47091930	47221055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47123545_47123657_47219318_47219379_47220094
ENSMUSG00000042705.10_2	chr18	+	1443	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234701.2	528	6	-15	-900	0	-7	multi-exon	FALSE	canonical	3	144	junction_2	502.986441169143	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAACTCAAGCGTACAA	NA	False	NA	19	True	AATAAA	-20	NA	47091931	47221055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_47091996_47093482_47093574_47100806_47100963_47123545_47123657_47219318_47219379_47220094
ENSMUSG00000042709.16_0	chr11	-	1787	8	FSM	ENSMUSG00000042709.16	ENSMUST00000108721.9	1813	8	14	12	-1	0	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTGAATCTTTG	NA	False	NA	-12	True	NA	NA	NA	60307863	60291463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ENSMUSG00000042709.16_10	chr11	-	1179	8	NIC	ENSMUSG00000042709.16	novel	949	8	NA	NA	1	-407	combination_of_known_junctions	FALSE	canonical	3	55	junction_7	134.352870745478	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATATCAAGCCTCATTT	NA	False	NA	NA	False	ATTAAA	-17	NA	60307876	60291870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60307811
ENSMUSG00000042709.16_16	chr11	-	1619	9	NIC	ENSMUSG00000042709.16	novel	719	8	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	37	junction_8	131.387249666777	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAGTGAATCTTT	NA	False	NA	-13	True	NA	NA	NA	60307868	60291464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60302492_60302556_60307811
ENSMUSG00000042709.16_17	chr11	-	3650	7	NIC	ENSMUSG00000042709.16	novel	1813	8	NA	NA	3	-16	intron_retention	FALSE	canonical	3	286	junction_1	38.8887301584062	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATCTTTTAAAA	NA	False	NA	-28	True	NA	NA	NA	60307874	60291479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60300232_60300411_60300457_60307576
ENSMUSG00000042709.16_2	chr11	-	1536	8	NIC	ENSMUSG00000042709.16	novel	1813	8	NA	NA	-3	-18	combination_of_known_junctions	FALSE	canonical	3	55	junction_7	105.029830553622	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAAATAAATCTTTTAA	NA	False	NA	-30	True	NA	NA	NA	60307865	60291481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307811
ENSMUSG00000042709.16_3	chr11	-	176	1	ISM	ENSMUSG00000042709.16	ENSMUST00000108721.9	1813	8	16237	13	16204	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAGTGAATCTTT	4967	False	NA	-13	True	NA	NA	NA	60291640	60291464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_60291500_60291600
ENSMUSG00000042709.16_7	chr11	-	3676	7	NIC	ENSMUSG00000042709.16	novel	1849	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	57	junction_4	110.501005525842	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTGAATCTTTG	NA	False	NA	-12	True	NA	NA	NA	60307863	60291463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60300232_60300411_60300457_60307576
ENSMUSG00000042709.16_9	chr11	-	1805	8	FSM	ENSMUSG00000042709.16	ENSMUST00000145532.9	949	8	-16	-840	1	0	multi-exon	FALSE	canonical	3	57	junction_4	104.174892192242	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTGAATCTTTG	NA	False	NA	-12	True	NA	NA	NA	60307860	60291463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ENSMUSG00000042712.11_0	chrX	+	974	3	FSM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	33	12	33	-12	multi-exon	FALSE	canonical	3	2732	junction_2	36	985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATAAGAATCCAACAG	NA	False	NA	-4	True	AATAAA	-12	NA	135145860	135147876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_135145977_135146449_135146516_135147084
ENSMUSG00000042712.11_6	chrX	+	622	1	ISM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	1424	15	820	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACTAAAAATAAGAATCCAA	NA	False	NA	-7	True	AATAAA	-9	NA	135147251	135147873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_135147300_135147900
ENSMUSG00000042719.18_0	chr5	+	3122	24	FSM	ENSMUSG00000042719.18	ENSMUST00000042163.15	5447	24	58	2267	0	211	multi-exon	FALSE	canonical	3	302	junction_8	45.1361728780741	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGGACCCTCATCTGGG	NA	False	NA	32	True	ATTAAA	-37	NA	121536056	121578205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
ENSMUSG00000042719.18_1	chr5	+	5209	25	NIC	ENSMUSG00000042719.18	novel	5447	24	NA	NA	-8	-317	combination_of_known_junctions	FALSE	canonical	3	19	junction_16	112.146822167292	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTAAAAACAACAAAAACC	NA	False	NA	NA	False	NA	NA	NA	121536048	121580155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121567395_121567525_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
ENSMUSG00000042719.18_77	chr5	+	1890	1	ISM	ENSMUSG00000042719.18	ENSMUST00000042163.15	5447	24	42583	1	516	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCAGGTTTGTTGAGAC	NA	False	NA	18	True	AATACA	-17	NA	121578581	121580471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_121578600_121580500
ENSMUSG00000042724.9_1	chr12	-	4633	10	NIC	ENSMUSG00000042724.9	novel	4564	11	NA	NA	30	428	intron_retention	FALSE	canonical	3	49	junction_9	4.0490815907308	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCAGTGTCACCTTTG	NA	False	NA	-4	True	NA	NA	NA	81827919	81768384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_81769298_81770837_81771651_81772495_81772609_81776456_81777434_81778765_81779007_81780853_81781030_81781843_81781993_81790571_81790753_81819453_81819868_81827263
ENSMUSG00000042724.9_12	chr12	-	3784	9	NIC	ENSMUSG00000042724.9	novel	4564	11	NA	NA	38	-1953	intron_retention	FALSE	canonical	3	49	junction_8	4.24264068711928	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTCTCTCCTTTTA	NA	False	NA	NA	False	AGTAAA	-15	NA	81827911	81770765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_81771651_81772495_81772609_81776456_81777434_81778765_81779007_81780853_81781030_81781843_81781993_81790571_81790753_81819453_81819868_81827263
ENSMUSG00000042724.9_4	chr12	-	3931	11	FSM	ENSMUSG00000042724.9	ENSMUST00000035987.9	4564	11	54	579	54	450	multi-exon	FALSE	canonical	3	48	junction_4	4.27083130081252	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGATGAGTGTCTCGTGT	NA	False	NA	-6	True	NA	NA	NA	81827895	81768362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_81769298_81770837_81771651_81772495_81772609_81776456_81776611_81777310_81777434_81778765_81779007_81780853_81781030_81781843_81781993_81790571_81790753_81819453_81819868_81827263
ENSMUSG00000042724.9_5	chr12	-	3995	12	NNC	ENSMUSG00000042724.9	novel	3303	12	NA	NA	-48	449	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	19.5325538820971	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGATGAGTGTCTCGTG	NA	False	NA	-7	True	NA	NA	NA	81827831	81768363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_81769298_81770837_81771651_81772495_81772609_81772975_81773105_81776456_81776611_81777310_81777434_81778765_81779007_81780853_81781030_81781843_81781993_81790571_81790753_81819453_81819868_81827263
ENSMUSG00000042724.9_8	chr12	-	2269	6	ISM	ENSMUSG00000042724.9	ENSMUST00000035987.9	4564	11	49057	575	48756	454	3prime_fragment	FALSE	canonical	3	48	junction_4	4.96386945839634	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGTGTCTCGTGTCCTA	2256	False	NA	-2	True	NA	NA	NA	81778892	81768358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_81769298_81770837_81771651_81772495_81772609_81776456_81776611_81777310_81777434_81778765
ENSMUSG00000042726.15_1	chr5	-	2455	12	FSM	ENSMUSG00000042726.15	ENSMUST00000042312.14	2503	12	42	6	-13	-1	multi-exon	FALSE	canonical	3	16	junction_2	8.79894809640935	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCAGCTTGTGATTCTTT	3611	False	NA	-5	True	AATAAA	-13	NA	121523653	121509793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121510476_121510665_121510739_121511200_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
ENSMUSG00000042726.15_12	chr5	-	2276	12	NIC	ENSMUSG00000042726.15	novel	2503	12	NA	NA	17	-1	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	10.4920276700026	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCAGCTTGTGATTCTTT	3589	False	NA	-5	True	AATAAA	-13	NA	121523675	121509793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_121510476_121510665_121510739_121511401_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
ENSMUSG00000042726.15_14	chr5	-	2498	12	NIC	ENSMUSG00000042726.15	novel	2503	12	NA	NA	-14	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_11	13.1274741863161	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGAGCTCAGCTTGTGA	3778	False	NA	-11	True	AATAAA	-7	NA	121523486	121509799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_121510476_121510665_121510739_121511200_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523371
ENSMUSG00000042726.15_3	chr5	-	2448	12	FSM	ENSMUSG00000042726.15	ENSMUST00000120784.8	2425	12	-24	1	-18	-1	multi-exon	FALSE	canonical	3	6	junction_2	10.9499235817553	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCAGCTTGTGATTCTTT	3606	False	NA	-5	True	AATAAA	-13	NA	121523658	121509793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121510476_121510665_121510739_121511212_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
ENSMUSG00000042726.15_5	chr5	-	2885	11	NIC	ENSMUSG00000042726.15	novel	2425	12	NA	NA	9	-1	intron_retention	FALSE	canonical	3	6	junction_2	11.4843371598016	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTCAGCTTGTGATTCT	3639	False	NA	-7	True	AATAAA	-11	NA	121523625	121509795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_121510476_121510665_121510739_121511212_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
ENSMUSG00000042726.15_6	chr5	-	1074	3	ISM	ENSMUSG00000042726.15	ENSMUST00000156158.6	3083	6	5372	1	23	-1	3prime_fragment	FALSE	canonical	3	16	junction_2	15	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTGATTCTTTCTATA	NA	False	NA	0	True	AATAAA	-18	NA	121511514	121509788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121510476_121510665_121510739_121511200
ENSMUSG00000042729.12_0	chr19	+	1208	11	FSM	ENSMUSG00000042729.12	ENSMUST00000049424.11	1204	11	-9	5	3	1	multi-exon	FALSE	canonical	3	1012	junction_8	78.6635875103596	556	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCCTGGACCTTTTGT	966	False	NA	23	True	AATAAA	-16	NA	8713193	8717983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
ENSMUSG00000042734.7_0	chr12	+	4009	3	FSM	ENSMUSG00000042734.7	ENSMUST00000036116.6	2042	3	-96	-1871	24	-745	multi-exon	FALSE	canonical	3	20	junction_1	7	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGTGTATATCCTTTT	NA	False	NA	NA	False	NA	NA	NA	81678046	81713586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_81678576_81707339_81707523_81710289
ENSMUSG00000042734.7_1	chr12	+	4086	2	ISM	ENSMUSG00000042734.7	ENSMUST00000218362.2	4754	4	29392	64	29272	-64	intron_retention	FALSE	canonical	3	34	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCTTTCAGATTTCATT	NA	False	NA	-56	True	AAGAAA	-25	NA	81707414	81714267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_81707523_81710289
ENSMUSG00000042734.7_2	chr12	+	3409	1	NIC	ENSMUSG00000042734.7	novel	4754	4	NA	NA	32772	-8	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTAATTTGTTCTATGT	1794	False	NA	0	True	CATAAA	-12	NA	81710914	81714323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_81710900_81714300
ENSMUSG00000042737.10_1	chr3	+	376	2	FSM	ENSMUSG00000042737.10	ENSMUST00000040824.2	404	2	28	0	28	0	multi-exon	FALSE	canonical	3	539	junction_1	0	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTGTAGTTTTGAGT	6805	False	NA	17	True	ATTAAA	-18	NA	89173886	89174384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89173914_89174035
ENSMUSG00000042737.10_2	chr3	+	351	1	FSM	ENSMUSG00000042737.10	ENSMUST00000137975.2	441	1	88	2	88	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTGTAGTTTTGAGT	6952	False	NA	17	True	ATTAAA	-18	NA	89174033	89174384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89174000_89174400
ENSMUSG00000042742.8_0	chr6	-	3852	5	FSM	ENSMUSG00000042742.8	ENSMUST00000045235.8	4143	5	29	262	1	-262	multi-exon	FALSE	canonical	3	46	junction_2	9.61769203083567	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	16	True	NA	NA	False	NA	NA	NA	13677936	13625933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_13629100_13630588_13630704_13641685_13641857_13663200_13663343_13677678
ENSMUSG00000042742.8_1	chr6	-	2696	1	ISM	ENSMUSG00000042742.8	ENSMUST00000045235.8	4143	5	49593	5	49565	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATATTCTTTGTCTGTTAC	NA	False	NA	-4	True	ATTAAA	-15	NA	13628372	13625676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_13625700_13628400
ENSMUSG00000042743.14_0	chr13	+	3772	11	FSM	ENSMUSG00000042743.14	ENSMUST00000044385.14	3048	11	26	-750	-6	750	multi-exon	FALSE	canonical	3	36	junction_7	16.2775919595006	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAACAGATTTTGTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	104246274	104278993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_104246478_104247577_104247698_104254831_104254936_104257974_104258045_104260697_104260798_104265736_104265842_104268444_104268584_104268673_104268737_104271111_104271150_104271347_104271432_104276247
ENSMUSG00000042743.14_12	chr13	+	1505	1	Genic_Genomic	ENSMUSG00000042743.14	novel	NA	NA	NA	NA	31152	750	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAACAGATTTTGTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	104277488	104278993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_104277500_104279000
ENSMUSG00000042743.14_2	chr13	+	3762	11	NNC	ENSMUSG00000042743.14	novel	3048	11	NA	NA	-8	750	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_7	23.9893726470702	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAACAGATTTTGTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	104246272	104278993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_104246478_104247577_104247698_104254831_104254936_104257974_104258045_104260697_104260798_104265736_104265842_104268444_104268572_104268673_104268737_104271111_104271150_104271347_104271432_104276247
ENSMUSG00000042743.14_5	chr13	+	3759	11	NIC	ENSMUSG00000042743.14	novel	3048	11	NA	NA	-25	750	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	23.8086118872983	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAACAGATTTTGTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	104246311	104278993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_104246502_104247577_104247698_104254831_104254936_104257974_104258045_104260697_104260798_104265736_104265842_104268444_104268584_104268673_104268737_104271111_104271150_104271347_104271432_104276247
ENSMUSG00000042744.17_1	chr5	+	1286	2	ISM	ENSMUSG00000042744.17	ENSMUST00000042614.13	15482	76	10	113860	10	-44732	5prime_fragment	FALSE	canonical	3	14	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGATTGAGTTCTCACCTG	4325	False	NA	NA	False	AATAAA	-17	NA	121358291	121392780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_121358721_121391923
ENSMUSG00000042744.17_13	chr5	+	5250	16	ISM	ENSMUSG00000042744.17	ENSMUST00000042614.13	15482	76	128688	16	28884	-16	3prime_fragment	FALSE	canonical	3	9	junction_4	5.76734100103524	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGACTGACCTAAGAGTCT	3179	False	NA	3	True	AATAAA	-14	NA	121486969	121506624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_121487789_121488492_121488701_121491553_121491778_121491876_121492029_121493625_121493733_121494265_121494390_121496206_121496398_121497359_121497507_121498167_121498288_121498694_121498851_121500503_121500608_121500780_121501003_121501805_121501970_121502598_121502795_121502929_121503153_121504531
ENSMUSG00000042744.17_19	chr5	+	2895	5	ISM	ENSMUSG00000042744.17	ENSMUST00000042614.13	15482	76	142500	18	42696	-18	3prime_fragment	FALSE	canonical	3	20	junction_4	3.56195171219375	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGACTGACCTAAGAGT	NA	False	NA	1	True	AATAAA	-12	NA	121500781	121506622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_121501003_121501805_121501970_121502598_121502795_121502929_121503153_121504531
ENSMUSG00000042744.17_26	chr5	+	6112	18	ISM	ENSMUSG00000042744.17	ENSMUST00000042614.13	15482	76	123276	12	23472	-12	3prime_fragment	FALSE	canonical	3	9	junction_6	5.80060848735108	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACCTAAGAGTCTGTGG	NA	False	NA	7	True	AATAAA	-18	NA	121481557	121506628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_121481748_121482745_121482926_121486481_121487789_121488492_121488701_121491553_121491778_121491876_121492029_121493625_121493733_121494265_121494390_121496206_121496398_121497359_121497507_121498167_121498288_121498694_121498851_121500503_121500608_121500780_121501003_121501805_121501970_121502598_121502795_121502929_121503153_121504531
ENSMUSG00000042744.17_39	chr5	+	3932	13	ISM	ENSMUSG00000042744.17	ENSMUST00000042614.13	15482	76	133657	21	33853	-21	3prime_fragment	FALSE	canonical	3	9	junction_1	6.11634876558084	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGACTGACTGACCTAAG	8148	False	NA	-2	True	AATAAA	-9	NA	121491938	121506619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_121492029_121493625_121493733_121494265_121494390_121496206_121496398_121497359_121497507_121498167_121498288_121498694_121498851_121500503_121500608_121500780_121501003_121501805_121501970_121502598_121502795_121502929_121503153_121504531
ENSMUSG00000042745.10_0	chr2	+	927	2	FSM	ENSMUSG00000042745.10	ENSMUST00000038368.9	934	2	4	3	4	-3	multi-exon	FALSE	canonical	3	30	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTTGCTGTGACTTCTT	4426	False	NA	10	True	ATTAAA	-14	NA	152578174	152579327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152578666_152578891
ENSMUSG00000042747.13_1	chr3	+	513	5	FSM	ENSMUSG00000042747.13	ENSMUST00000040888.12	1172	5	475	184	7	0	multi-exon	FALSE	canonical	3	1428	junction_1	178.055293378209	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGTCTGTGAACTGTG	7598	False	NA	20	True	AATAAA	-14	NA	89153747	89157029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89153823_89154084_89154240_89154371_89154436_89156380_89156448_89156877
ENSMUSG00000042747.13_3	chr3	+	516	5	NIC	ENSMUSG00000042747.13	novel	1172	5	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	88	junction_1	756.677730278882	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGTCTGTGAACTGTG	7592	False	NA	20	True	AATAAA	-14	NA	89153741	89157029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89153823_89154087_89154240_89154371_89154436_89156380_89156448_89156877
ENSMUSG00000042747.13_4	chr3	+	531	5	NIC	ENSMUSG00000042747.13	novel	582	5	NA	NA	67	0	combination_of_known_splicesites	FALSE	canonical	3	225	junction_1	697.396945791993	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGTCTGTGAACTGTG	7658	False	NA	20	True	AATAAA	-14	NA	89153807	89157029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89153901_89154084_89154240_89154371_89154436_89156380_89156448_89156877
ENSMUSG00000042747.13_6	chr3	+	436	4	ISM	ENSMUSG00000042747.13	ENSMUST00000168900.3	582	5	346	-13	346	0	3prime_fragment	FALSE	canonical	3	1794	junction_2	31.5418593124896	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGTCTGTGAACTGTG	7937	False	NA	20	True	AATAAA	-14	NA	89154086	89157029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_89154240_89154371_89154436_89156380_89156448_89156877
ENSMUSG00000042750.8_0	chrX	-	800	3	FSM	ENSMUSG00000042750.8	ENSMUST00000049130.8	903	3	98	5	98	-5	multi-exon	FALSE	canonical	3	901	junction_2	34	278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTATCTTAGTAGTTCTTT	4254	False	NA	-5	True	AATAAA	-13	NA	134968887	134967317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_134967957_134968348_134968422_134968799
ENSMUSG00000042751.15_29	chr1	+	4000	5	NNC	ENSMUSG00000042751.15	novel	4638	12	NA	NA	312	-2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	96.3872398193869	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTAGAGTCTTGTGTCTTT	NA	False	NA	11	True	AATAAA	-12	NA	152969537	152995005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_152969599_152969782_152969860_152987887_152987990_152988125_152988194_152991313
ENSMUSG00000042751.15_34	chr1	+	4005	4	ISM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	138968	2	491	-2	3prime_fragment	FALSE	canonical	3	223	junction_2	11.8415464455544	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTAGAGTCTTGTGTCTTT	NA	False	NA	11	True	AATAAA	-12	NA	152969716	152995005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_152969860_152987887_152987990_152988125_152988194_152991313
ENSMUSG00000042751.15_4	chr1	+	4019	5	ISM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	135347	114	-3130	-17	3prime_fragment	FALSE	canonical	3	59	junction_1	77.8985718739439	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACCATTTCACAGTGAA	NA	False	NA	NA	False	AATAAA	-18	NA	152966095	152994893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_152966288_152969782_152969860_152987887_152987990_152988125_152988194_152991313
ENSMUSG00000042751.15_41	chr1	+	2612	1	ISM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	161645	2	23168	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTAGAGTCTTGTGTCTTT	NA	False	NA	11	True	AATAAA	-12	NA	152992393	152995005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_152992400_152995000
ENSMUSG00000042751.15_9	chr1	+	3996	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	17	-3	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	209	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTAGAGTCTTGTGTCTT	NA	False	NA	10	True	AATAAA	-11	NA	152969242	152995004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
ENSMUSG00000042757.17_1	chr9	-	2188	6	FSM	ENSMUSG00000042757.17	ENSMUST00000189588.7	2850	6	0	662	0	-1	multi-exon	FALSE	canonical	1	4	junction_4	14.324803663576	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCGGTTGCACTGATTG	NA	False	NA	NA	False	AATAAA	-13	NA	103639036	103361638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_103361983_103366387_103366543_103376000_103377408_103486909_103486996_103630053_103630167_103638953
ENSMUSG00000042757.17_2	chr9	-	2162	6	FSM	ENSMUSG00000042757.17	ENSMUST00000189066.2	2145	6	-24	7	11	-4	multi-exon	FALSE	canonical	3	18	junction_4	9.53729521405309	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAAAGCGGTTGCACTGA	NA	False	NA	NA	False	AATAAA	-10	NA	103639017	103361641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_103361983_103366387_103366543_103376000_103377408_103486909_103486992_103630053_103630167_103638953
ENSMUSG00000042759.13_1	chr7	+	3649	4	FSM	ENSMUSG00000042759.13	ENSMUST00000039522.8	3685	4	8	28	8	-28	multi-exon	FALSE	canonical	2	5	junction_1	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATAAATATCCAA	NA	False	NA	NA	False	NA	NA	NA	126184121	126188256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126184241_126184547_126186984_126187068_126187335_126187428
ENSMUSG00000042759.13_2	chr7	+	2545	3	ISM	ENSMUSG00000042759.13	ENSMUST00000039522.8	3685	4	1419	28	-719	-28	3prime_fragment	FALSE	canonical	3	6	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATAAATATCCAA	NA	False	NA	NA	False	NA	NA	NA	126185532	126188256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_126186984_126187068_126187335_126187428
ENSMUSG00000042763.10_0	chr4	-	2798	4	FSM	ENSMUSG00000042763.10	ENSMUST00000064444.8	2727	4	-71	0	-71	0	multi-exon	FALSE	canonical	3	84	junction_3	2.49443825784929	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAGAAGCAATATTTAATA	NA	False	NA	0	True	AATAAA	-16	NA	124756035	124749031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_124751033_124752923_124753001_124754156_124754267_124755425
ENSMUSG00000042763.10_1	chr4	-	1517	1	ISM	ENSMUSG00000042763.10	ENSMUST00000064444.8	2727	4	5416	0	5416	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAGAAGCAATATTTAATA	1630	False	NA	0	True	AATAAA	-16	NA	124750548	124749031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_124749000_124750500
ENSMUSG00000042770.9_0	chr6	-	988	4	FSM	ENSMUSG00000042770.9	ENSMUST00000045855.9	1058	4	63	7	-17	-7	multi-exon	FALSE	canonical	3	260	junction_1	18.8738502225228	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAGTGGAGACAGTTTTA	NA	False	NA	-36	True	AATACA	-13	NA	135145150	135114526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_135115062_135129818_135130000_135132148_135132288_135145017
ENSMUSG00000042770.9_1	chr6	-	283	1	ISM	ENSMUSG00000042770.9	ENSMUST00000045855.9	1058	4	30404	7	30324	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAGTGGAGACAGTTTTA	3437	False	NA	-36	True	AATACA	-13	NA	135114809	135114526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_135114500_135114800
ENSMUSG00000042772.16_1	chr1	-	5657	22	NIC	ENSMUSG00000042772.16	novel	3928	23	NA	NA	-9	-4	combination_of_known_junctions	FALSE	canonical	3	176	junction_5	39.6466250175655	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGATCGGTGTGTAGAG	NA	False	NA	-8	True	ATTAAA	-14	NA	152778406	152712750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
ENSMUSG00000042772.16_11	chr1	-	5945	23	NIC	ENSMUSG00000042772.16	novel	3928	23	NA	NA	-9	-4	combination_of_known_junctions	FALSE	canonical	3	60	junction_6	78.6312137041966	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGATCGGTGTGTAGAG	NA	False	NA	-8	True	ATTAAA	-14	NA	152778406	152712750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152718980_152719131_152719786_152720159_152720963_152721347_152721869_152722015_152724346_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
ENSMUSG00000042772.16_12	chr1	-	5807	23	FSM	ENSMUSG00000042772.16	ENSMUST00000111836.4	3928	23	-9	-1870	-9	-4	multi-exon	FALSE	canonical	3	60	junction_6	70.0173089579927	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGATCGGTGTGTAGAG	NA	False	NA	-8	True	ATTAAA	-14	NA	152778406	152712750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152718980_152719131_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
ENSMUSG00000042772.16_26	chr1	-	5794	23	NNC	ENSMUSG00000042772.16	novel	5792	23	NA	NA	-9	-4	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_21	74.1391504966413	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGATCGGTGTGTAGAG	NA	False	NA	-8	True	ATTAAA	-14	NA	152778406	152712750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152753791_152753929_152778259
ENSMUSG00000042772.16_3	chr1	-	1893	1	ISM	ENSMUSG00000042772.16	ENSMUST00000073441.13	5767	22	63730	5	10028	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGATCGGTGTGTAGAG	NA	False	NA	-8	True	ATTAAA	-14	NA	152714643	152712750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_152712800_152714600
ENSMUSG00000042772.16_6	chr1	-	5795	22	FSM	ENSMUSG00000042772.16	ENSMUST00000073441.13	5767	22	-33	5	-9	-4	multi-exon	FALSE	canonical	3	75	junction_8	55.4427244244903	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGATCGGTGTGTAGAG	NA	False	NA	-8	True	ATTAAA	-14	NA	152778406	152712750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724346_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
ENSMUSG00000042784.10_0	chr3	+	2668	7	FSM	ENSMUSG00000042784.10	ENSMUST00000041142.4	2242	7	-431	5	-431	-5	multi-exon	FALSE	canonical	2	4	junction_5	1.60727512683216	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTATGCCAGCTGTGGTTT	NA	False	NA	3	True	AATAAA	-16	NA	89135932	89140683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89136485_89137217_89138522_89138619_89138673_89138807_89138942_89139069_89139192_89139272_89139423_89140330
ENSMUSG00000042787.16_0	chr9	+	2673	8	NIC	ENSMUSG00000042787.16	novel	2624	7	NA	NA	4	-8	combination_of_known_splicesites	FALSE	canonical	3	31	junction_2	21.0092302358283	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGACAGCACGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	119274029	119293296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_119274217_119274352_119274388_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
ENSMUSG00000042787.16_10	chr9	+	2370	1	ISM	ENSMUSG00000042787.16	ENSMUST00000035094.14	3832	6	18192	13	18148	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTGCTTCTGACCGGTG	NA	False	NA	NA	False	NA	NA	NA	119292200	119294570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_119292200_119294600
ENSMUSG00000042787.16_13	chr9	+	1475	2	ISM	ENSMUSG00000042787.16	ENSMUST00000214462.2	2624	7	7266	479	7266	-478	3prime_fragment	FALSE	canonical	3	86	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCTTCTGCTCCTTCAT	NA	False	NA	NA	False	AATAAA	-20	NA	119281318	119292826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_119281409_119291441
ENSMUSG00000042787.16_2	chr9	+	2526	6	FSM	ENSMUSG00000042787.16	ENSMUST00000035094.14	3832	6	19	1287	2	-8	multi-exon	FALSE	canonical	3	21	junction_1	23.8109218637162	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGACAGCACGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	119274027	119293296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119274217_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
ENSMUSG00000042787.16_3	chr9	+	2640	7	FSM	ENSMUSG00000042787.16	ENSMUST00000214462.2	2624	7	-25	9	2	-8	multi-exon	FALSE	canonical	2	5	junction_1	29.590257405662	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGACAGCACGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	119274027	119293296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119274217_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
ENSMUSG00000042787.16_5	chr9	+	2556	7	FSM	ENSMUSG00000042787.16	ENSMUST00000164213.5	2571	7	2	13	2	-13	multi-exon	FALSE	canonical	3	15	junction_2	23.8706002345051	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCAAAAAGACAGCACGC	NA	False	NA	NA	False	NA	NA	NA	119274027	119293291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119274217_119274352_119274388_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
ENSMUSG00000042790.17_3	chr9	-	2644	13	ISM	ENSMUSG00000042790.17	ENSMUST00000160699.9	2287	14	1990	-529	1452	-6	3prime_fragment	FALSE	canonical	3	36	junction_2	9.16628787096136	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAACAACAAAATCAGGTT	NA	False	NA	NA	False	AGTAAA	-12	NA	45816219	45775602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103
ENSMUSG00000042790.17_4	chr9	-	3397	14	FSM	ENSMUSG00000042790.17	ENSMUST00000160699.9	2287	14	28	-1138	-6	-5	multi-exon	FALSE	canonical	1	1	junction_13	15.6941929485938	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTGAGAAAAAATGCATCT	9114	False	NA	NA	False	ATTAAA	-9	NA	45818181	45774993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45818035
ENSMUSG00000042790.17_5	chr9	-	2714	14	FSM	ENSMUSG00000042790.17	ENSMUST00000058720.13	3964	14	455	795	-15	-5	multi-exon	FALSE	canonical	3	35	junction_13	9.64395754655542	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACAACAAAATCAGGTTC	9575	False	NA	NA	False	AGTAAA	-13	NA	45817720	45775601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
ENSMUSG00000042790.17_8	chr9	-	2800	15	NIC	ENSMUSG00000042790.17	novel	3964	14	NA	NA	-5	-14	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	14.9340386434508	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACAGTCCAAGAACAACAAA	9585	False	NA	NA	False	AGTAAA	-4	NA	45817710	45775610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_45776297_45777863_45777960_45778244_45778350_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
ENSMUSG00000042790.17_9	chr9	-	2143	12	ISM	ENSMUSG00000042790.17	ENSMUST00000162699.8	2808	14	6997	-1	255	1	3prime_fragment	FALSE	canonical	3	36	junction_2	9.57096159145589	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATCAGGTTCCATTTC	NA	False	NA	NA	False	AGTAAA	-19	NA	45811162	45775595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043
ENSMUSG00000042797.10_0	chr7	-	1975	3	FSM	ENSMUSG00000042797.10	ENSMUST00000206389.2	3737	3	263	1499	-88	874	multi-exon	FALSE	canonical	3	30	junction_1	4.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTAAAACTCAGTATT	NA	False	NA	NA	False	AAAACA	-17	NA	97387233	97374711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_97375912_97378177_97378295_97386575
ENSMUSG00000042797.10_1	chr7	-	816	1	ISM	ENSMUSG00000042797.10	ENSMUST00000206389.2	3737	3	13454	14	4553	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTAAAGAAAGAAATTTAAT	NA	False	NA	NA	False	NA	NA	NA	97374042	97373226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_97373200_97374000
ENSMUSG00000042804.14_0	chr4	+	2786	6	FSM	ENSMUSG00000042804.14	ENSMUST00000105651.8	3777	6	-255	1246	-125	-1245	multi-exon	TRUE	canonical	0	0	junction_3	1.85472369909914	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTATCTCTAAGAGTGAAT	4966	False	NA	NA	False	NA	NA	NA	152358563	152368548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152358840_152363469_152363938_152364301_152364732_152366222_152366416_152366827_152367013_152367314
ENSMUSG00000042808.11_0	chr12	-	912	2	FSM	ENSMUSG00000042808.11	ENSMUST00000082431.6	1010	2	96	2	94	-2	multi-exon	FALSE	canonical	3	177	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGCCTGGGTCTCTGTCT	NA	False	NA	-7	True	AATAAA	-14	NA	76842177	76839112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_76839775_76841927
ENSMUSG00000042808.11_1	chr12	-	604	1	FSM	ENSMUSG00000042808.11	ENSMUST00000221421.2	3165	1	2555	6	2555	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGCCTGGGTCTCTGTCT	NA	False	NA	-7	True	AATAAA	-14	NA	76839716	76839112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_76839100_76839700
ENSMUSG00000042810.15_0	chr6	+	3968	18	FSM	ENSMUSG00000042810.15	ENSMUST00000114571.8	6695	18	81	2646	9	0	multi-exon	FALSE	canonical	3	25	junction_1	12.8178616724737	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAAGGCCATTGGCTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	48372600	48393833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48372822_48379804_48379945_48380311_48380432_48380924_48381075_48382167_48382324_48383230_48383366_48383767_48383942_48384606_48384757_48385462_48385661_48386103_48386278_48386651_48386829_48388575_48388729_48389207_48389361_48390011_48390207_48390296_48390438_48390989_48391086_48391423_48391535_48392509
ENSMUSG00000042810.15_1	chr6	+	3961	18	FSM	ENSMUSG00000042810.15	ENSMUST00000114572.9	4323	18	-205	567	3	0	multi-exon	FALSE	canonical	3	26	junction_1	12.6595014032365	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAAGGCCATTGGCTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	48372594	48393833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48372822_48379817_48379945_48380311_48380432_48380924_48381075_48382167_48382324_48383230_48383366_48383767_48383942_48384606_48384757_48385462_48385661_48386103_48386278_48386651_48386829_48388575_48388729_48389207_48389361_48390011_48390207_48390296_48390438_48390989_48391086_48391423_48391535_48392509
ENSMUSG00000042810.15_44	chr6	+	643	1	ISM	ENSMUSG00000042810.15	ENSMUST00000114571.8	6695	18	20673	2644	2923	2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGGCCATTGGCTTCTG	NA	False	NA	NA	False	ATTAAA	-16	NA	48393192	48393835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_48393200_48393800
ENSMUSG00000042814.9_0	chr2	+	689	1	FSM	ENSMUSG00000042814.9	ENSMUST00000062148.9	912	1	138	85	138	-85	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTGTGTGTGTCTGTAT	NA	False	NA	16	True	TATAAA	-12	NA	152529092	152529781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152529100_152529800
ENSMUSG00000042821.8_1	chr2	+	1608	3	FSM	ENSMUSG00000042821.8	ENSMUST00000052631.8	1621	3	7	6	7	-6	multi-exon	FALSE	canonical	2	7	junction_2	2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAGTGCTCAGTGTTGG	4762	False	NA	NA	False	AATAAA	-18	NA	167380121	167384728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_167380292_167380590_167381119_167383818
ENSMUSG00000042821.8_2	chr2	+	1103	2	ISM	ENSMUSG00000042821.8	ENSMUST00000052631.8	1621	3	811	6	811	-6	3prime_fragment	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAGTGCTCAGTGTTGG	5566	False	NA	NA	False	AATAAA	-18	NA	167380925	167384728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_167381119_167383818
ENSMUSG00000042826.14_0	chr11	-	4007	5	NIC	ENSMUSG00000042826.14	novel	2534	6	NA	NA	-1053	-1	intron_retention	FALSE	canonical	2	7	junction_2	2.8613807855649	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGGAGTGTTATCTGACAT	2344	False	NA	-5	True	ATTAAA	-14	NA	69693736	69686899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69689099_69689389_69689505_69690177_69690282_69690491_69690603_69692258
ENSMUSG00000042826.14_1	chr11	-	2259	2	ISM	ENSMUSG00000042826.14	ENSMUST00000102585.2	3039	5	3233	2	3092	-2	3prime_fragment	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCGGAGTGTTATCTGACA	6630	False	NA	-6	True	ATTAAA	-13	NA	69689450	69686900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69689099_69689389
ENSMUSG00000042826.14_2	chr11	-	2693	5	NNC	ENSMUSG00000042826.14	novel	2534	6	NA	NA	1221	-2	intron_retention	FALSE	canonical	1	1	junction_4	5.02493781056044	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCGGAGTGTTATCTGACA	4759	False	NA	-6	True	ATTAAA	-13	NA	69691321	69686900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_69689099_69689389_69689505_69690177_69690282_69690491_69690603_69691156
ENSMUSG00000042826.14_5	chr11	-	2653	5	NNC	ENSMUSG00000042826.14	novel	3039	5	NA	NA	1764	-6	intron_retention	FALSE	canonical	1	1	junction_4	4.96865172858795	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAACCGGAGTGTTATCT	5302	False	NA	-10	True	ATTAAA	-9	NA	69690778	69686904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_69689099_69689389_69689589_69690177_69690282_69690491_69690603_69690733
ENSMUSG00000042826.14_7	chr11	-	3307	5	FSM	ENSMUSG00000042826.14	ENSMUST00000102585.2	3039	5	-270	2	-270	-2	multi-exon	FALSE	canonical	2	8	junction_2	2.59807621135332	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCGGAGTGTTATCTGACA	3127	False	NA	-6	True	ATTAAA	-13	NA	69692953	69686900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69689099_69689389_69689589_69690177_69690282_69690491_69690603_69692258
ENSMUSG00000042826.14_8	chr11	-	2569	5	NNC	ENSMUSG00000042826.14	novel	2534	6	NA	NA	1764	-6	intron_retention	FALSE	canonical	1	1	junction_4	5.02493781056044	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAACCGGAGTGTTATCT	5302	False	NA	-10	True	ATTAAA	-9	NA	69690778	69686904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_69689099_69689389_69689505_69690177_69690282_69690491_69690603_69690733
ENSMUSG00000042831.14_0	chr7	+	1122	6	FSM	ENSMUSG00000042831.14	ENSMUST00000132193.8	1112	6	-10	0	1	0	multi-exon	FALSE	canonical	3	431	junction_1	28.3125413906982	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTTTTGGATTTTTTTT	NA	False	NA	8	True	AATAAA	-15	NA	30008202	30013728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30012133_30013343
ENSMUSG00000042831.14_12	chr7	+	1459	5	NIC	ENSMUSG00000042831.14	novel	1112	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	431	junction_1	30.364452901378	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTTTTGGATTTTTTTT	NA	False	NA	8	True	AATAAA	-15	NA	30008201	30013728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30012133_30013343
ENSMUSG00000042831.14_2	chr7	+	918	7	FSM	ENSMUSG00000042831.14	ENSMUST00000060834.12	982	7	63	1	3	0	multi-exon	FALSE	canonical	3	231	junction_5	88.8144132446981	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTTTTGGATTTTTTTT	NA	False	NA	8	True	AATAAA	-15	NA	30008204	30013728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30013343
ENSMUSG00000042831.14_7	chr7	+	1004	7	NIC	ENSMUSG00000042831.14	novel	982	7	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	165.266451526013	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCGTTTTGGATTTTTTT	NA	False	NA	7	True	AATAAA	-14	NA	30008202	30013727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30011930_30012133_30013343
ENSMUSG00000042834.16_0	chr18	-	2126	5	FSM	ENSMUSG00000042834.16	ENSMUST00000237066.2	843	5	135	-1418	20	1	multi-exon	FALSE	canonical	0	0	junction_4	20.2854627751008	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGCTTTGGCTCATTA	NA	False	NA	-6	True	AATAAA	-18	NA	33596772	33570073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430_33596473_33596652
ENSMUSG00000042834.16_1	chr18	-	2048	4	FSM	ENSMUSG00000042834.16	ENSMUST00000051087.16	659	4	273	-1662	-31	-4	multi-exon	FALSE	canonical	3	37	junction_1	5.90668171555645	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTAACTGTGCTTTGGCT	NA	False	NA	-11	True	AATAAA	-13	NA	33596519	33570078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430
ENSMUSG00000042834.16_2	chr18	-	2180	5	FSM	ENSMUSG00000042834.16	ENSMUST00000168890.2	2185	5	2	3	2	0	multi-exon	FALSE	canonical	3	35	junction_4	6.79613860953409	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGTGCTTTGGCTCATT	NA	False	NA	-7	True	AATAAA	-17	NA	33597080	33570074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430_33596473_33596905
ENSMUSG00000042834.16_3	chr18	-	1005	1	ISM	ENSMUSG00000042834.16	ENSMUST00000168890.2	2185	5	25999	7	25405	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTAACTGTGCTTTGGCT	NA	False	NA	-11	True	AATAAA	-13	NA	33571083	33570078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_33570100_33571100
ENSMUSG00000042842.12_0	chr13	+	1895	7	FSM	ENSMUSG00000042842.12	ENSMUST00000110293.9	2193	7	293	5	-1	0	multi-exon	TRUE	canonical	0	0	junction_3	2.08166599946613	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGAATGTCTTCTTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	33149484	33163045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_33149527_33152482_33152658_33155453_33155607_33156229_33156348_33158879_33159023_33161507_33161664_33161937
ENSMUSG00000042851.18_1	chr2	+	4889	12	FSM	ENSMUSG00000042851.18	ENSMUST00000110320.9	4916	12	24	3	17	-3	multi-exon	FALSE	non_canonical	1	6	junction_7	5.58036700117193	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACACGACTGGTTCTATAA	6956	False	NA	1	True	AATAAA	-15	NA	128809345	128860480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_128809757_128833010_128833192_128835078_128835202_128839524_128839793_128844061_128844199_128847915_128848033_128848632_128848745_128852335_128852446_128853586_128853841_128856255_128856759_128857319_128857554_128858041
ENSMUSG00000042854.10_1	chr2	+	1569	2	FSM	ENSMUSG00000042854.10	ENSMUST00000151826.2	4426	2	26	2831	26	759	multi-exon	FALSE	canonical	3	131	junction_1	0	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGCTTAGCTAAGACATC	NA	False	NA	NA	False	NA	NA	NA	166635712	166638594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_166635989_166637301
ENSMUSG00000042854.10_3	chr2	+	2869	1	NIC	ENSMUSG00000042854.10	novel	4426	2	NA	NA	19	739	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTAAAGGTGTATGTCAC	NA	False	NA	NA	False	NA	NA	NA	166635705	166638574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_166635700_166638600
ENSMUSG00000042857.4_0	chr13	-	2114	1	FSM	ENSMUSG00000042857.4	ENSMUST00000221110.2	2177	1	49	14	49	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAACATAAAATTTTCT	NA	False	NA	NA	False	TATAAA	-14	NA	94495382	94493268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_94493300_94495400
ENSMUSG00000042870.16_0	chr8	+	2240	15	FSM	ENSMUSG00000042870.16	ENSMUST00000165630.3	2267	15	6	21	4	-21	multi-exon	FALSE	canonical	3	248	junction_1	29.4884965464743	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACCACCTGTCAGCAT	NA	False	NA	-9	True	AATAAA	-4	NA	75760338	75796728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
ENSMUSG00000042870.16_1	chr8	+	2089	13	NIC	ENSMUSG00000042870.16	novel	2267	15	NA	NA	1	-13	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	88.9817006780358	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGTCAGCATGATCTGCT	NA	False	NA	-1	True	AATAAA	-12	NA	75760333	75796736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_75760456_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
ENSMUSG00000042873.12_0	chr6	-	4718	4	FSM	ENSMUSG00000042873.12	ENSMUST00000162280.2	4762	4	47	-3	47	3	multi-exon	FALSE	canonical	1	2	junction_1	1.88561808316413	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTGGCTGCTGCTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	113172298	113145047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113148920_113153406_113153644_113170778_113171265_113172175
ENSMUSG00000042873.12_3	chr6	-	176	1	ISM	ENSMUSG00000042873.12	ENSMUST00000203665.2	1414	2	17825	548	17825	-548	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	113153079	113152903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_113152900_113153100
ENSMUSG00000042901.11_0	chr1	+	2127	10	FSM	ENSMUSG00000042901.11	ENSMUST00000109166.8	4279	10	284	1868	6	0	multi-exon	FALSE	canonical	3	74	junction_8	45.1526901978029	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGATGGATGGTTGTTAC	NA	False	NA	NA	False	AATAAA	-12	NA	183078876	183104463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_183079173_183085612_183085683_183087358_183087413_183087819_183087875_183094595_183094660_183094913_183095018_183097514_183097638_183099746_183099870_183103138_183103257_183103343
ENSMUSG00000042903.9_0	chrX	+	683	1	ISM	ENSMUSG00000042903.9	ENSMUST00000062000.6	3162	3	5656	7	5363	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAGATCTGGTTTCTGGT	9014	False	NA	14	True	AATAAA	-21	NA	100303789	100304472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_100303800_100304500
ENSMUSG00000042918.18_2	chr7	+	1940	9	ISM	ENSMUSG00000042918.18	ENSMUST00000148532.4	1606	10	708	-371	708	-159	3prime_fragment	FALSE	canonical	2	4	junction_3	3.23795846174715	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATACCCAGTTCTCATGT	7637	False	NA	NA	False	NA	NA	NA	45290124	45295006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45290264_45291201_45291241_45291748_45291889_45292171_45292354_45292660_45292749_45292920_45293116_45293627_45293853_45293942_45293998_45294129
ENSMUSG00000042938.9_0	chr2	+	1562	1	FSM	ENSMUSG00000042938.9	ENSMUST00000122417.2	843	1	3	-722	3	722	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATGCAGTCTCG	NA	False	NA	NA	False	AATAAA	-15	NA	146147469	146149031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_146147500_146149000
ENSMUSG00000042942.19_0	chr18	+	3902	20	NIC	ENSMUSG00000042942.19	novel	8420	33	NA	NA	2	-4628	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1.34802615524902	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTTTGTAGAAAATTCATA	-5	True	NA	NA	False	AATAAA	-16	NA	10325180	10533661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_10325290_10449929_10450037_10458221_10458382_10458577_10458776_10469341_10469519_10474218_10474396_10476665_10476789_10495096_10495226_10498950_10499068_10499883_10500004_10500940_10501079_10503157_10503344_10509082_10509410_10510627_10510757_10511328_10511464_10515193_10515392_10522087_10522269_10523206_10523400_10529575_10529707_10532794
ENSMUSG00000042942.19_6	chr18	+	3793	19	ISM	ENSMUSG00000042942.19	ENSMUST00000048977.16	8420	33	-24	29285	-22	-4634	5prime_fragment	FALSE	canonical	0	0	junction_1	1.42400062421959	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGCCACTTTGTAGAAAA	-31	True	NA	NA	False	AATAAA	-10	NA	10325154	10533655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_10325290_10449929_10450037_10458221_10458382_10458577_10458776_10469341_10469519_10474218_10474396_10476665_10476789_10498950_10499068_10499883_10500004_10500940_10501079_10503157_10503344_10509082_10509410_10510627_10510757_10511328_10511464_10515193_10515392_10522087_10522269_10523206_10523400_10529575_10529707_10532794
ENSMUSG00000042961.14_0	chr15	-	4039	22	FSM	ENSMUSG00000042961.14	ENSMUST00000058593.10	4778	22	206	533	163	-70	multi-exon	TRUE	canonical	0	0	junction_2	0.65291948575248	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGAGGTGGGTCATTACCG	NA	False	NA	NA	False	ATTAAA	-12	NA	7427579	7236133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_7237284_7237982_7238087_7241611_7241696_7249105_7249250_7252228_7252308_7261068_7261250_7263665_7263783_7267217_7267330_7271882_7272127_7273263_7273390_7276480_7276671_7279510_7279656_7280674_7280776_7281886_7281988_7282908_7283228_7283909_7284026_7319264_7319432_7333405_7333542_7334582_7334701_7345879_7345964_7347721_7347832_7427468
ENSMUSG00000042978.12_0	chr7	+	4161	4	FSM	ENSMUSG00000042978.12	ENSMUST00000056028.11	4109	4	-62	10	-62	-10	multi-exon	FALSE	canonical	3	196	junction_2	13.4412301024373	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAATGATTGTTTGAGC	NA	False	NA	9	True	AATAAA	-6	NA	125871728	125894178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_125872272_125889028_125889262_125890214_125890418_125890996
ENSMUSG00000042978.12_13	chr7	+	2419	1	ISM	ENSMUSG00000042978.12	ENSMUST00000056028.11	4109	4	19956	23	1495	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAATTTAGAAAAA	NA	False	NA	-4	True	TTTAAA	-37	NA	125891746	125894165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_125891700_125894200
ENSMUSG00000042988.11_0	chr11	-	2020	12	NIC	ENSMUSG00000042988.11	novel	2012	12	NA	NA	-17	-23	combination_of_known_junctions	FALSE	canonical	3	54	junction_11	19.2637200221273	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAAAAC	9210	False	NA	NA	False	AATATA	-45	NA	120552018	120544636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820_120551192_120551946
ENSMUSG00000042988.11_1	chr11	-	2267	11	FSM	ENSMUSG00000042988.11	ENSMUST00000106177.8	2212	11	-78	23	-78	-23	multi-exon	FALSE	canonical	3	96	junction_10	9.96042167782067	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAAAAC	9718	False	NA	NA	False	AATATA	-45	NA	120551510	120544636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820
ENSMUSG00000042988.11_2	chr11	-	2258	13	NNC	ENSMUSG00000042988.11	novel	2012	12	NA	NA	-830	-23	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	31.8612443085465	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAAAAC	9874	False	NA	NA	False	AATATA	-45	NA	120552831	120544636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820_120551192_120551946_120552181_120552755
ENSMUSG00000042988.11_5	chr11	-	2207	11	NNC	ENSMUSG00000042988.11	novel	2212	11	NA	NA	-97	-23	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_5	31.3521929057602	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAAAAC	9699	False	NA	NA	False	AATATA	-45	NA	120551529	120544636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547499_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820
ENSMUSG00000042988.11_9	chr11	-	2049	12	FSM	ENSMUSG00000042988.11	ENSMUST00000106178.9	2012	12	-60	23	-60	-23	multi-exon	FALSE	canonical	2	9	junction_11	31.1782399219087	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAAAAC	9513	False	NA	NA	False	AATATA	-45	NA	120551715	120544636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820_120551192_120551614
ENSMUSG00000042992.16_0	chr6	+	1640	4	FSM	ENSMUSG00000042992.16	ENSMUST00000062755.10	1764	4	105	19	84	-19	multi-exon	FALSE	canonical	3	52	junction_1	6.37704215656966	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTATTGTGTAGCAGCTA	NA	False	NA	12	True	ATTAAA	-13	NA	134618007	134688131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_134618221_134621291_134621436_134662926_134663085_134687006
ENSMUSG00000042992.16_2	chr6	+	1332	3	FSM	ENSMUSG00000042992.16	ENSMUST00000203234.2	485	3	-196	-651	98	651	multi-exon	FALSE	canonical	3	52	junction_1	7	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134618021	134663915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_134618221_134621291_134621436_134662926
ENSMUSG00000042992.16_4	chr6	+	1086	1	ISM	ENSMUSG00000042992.16	ENSMUST00000062755.10	1764	4	69143	19	8533	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTATTGTGTAGCAGCTA	NA	False	NA	12	True	ATTAAA	-13	NA	134687045	134688131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_134687000_134688100
ENSMUSG00000042997.14_0	chr3	-	4983	7	FSM	ENSMUSG00000042997.14	ENSMUST00000056749.14	5047	7	55	9	20	-4	multi-exon	FALSE	canonical	3	23	junction_4	5.77350269189626	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAAAATTTATTGGCTT	NA	False	NA	NA	False	AATAAA	-8	NA	53370698	53356012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_53360071_53360962_53361076_53363846_53363939_53365905_53366107_53369052_53369201_53369732_53369886_53370480
ENSMUSG00000042997.14_1	chr3	-	3094	1	ISM	ENSMUSG00000042997.14	ENSMUST00000056749.14	5047	7	11651	5	10302	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTATTGGCTTTATT	NA	False	NA	NA	False	AATAAA	-12	NA	53359102	53356008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_53356000_53359100
ENSMUSG00000042997.14_2	chr3	-	4835	6	FSM	ENSMUSG00000042997.14	ENSMUST00000130348.2	4885	6	46	4	20	-4	multi-exon	FALSE	canonical	3	21	junction_4	7.03135833249878	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAAAATTTATTGGCTT	NA	False	NA	NA	False	AATAAA	-8	NA	53370698	53356012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_53360071_53360962_53361076_53363846_53363939_53365905_53366107_53369732_53369886_53370480
ENSMUSG00000042997.14_4	chr3	-	5483	2	ISM	ENSMUSG00000042997.14	ENSMUST00000130348.2	4885	6	7293	1068	5953	-1068	3prime_fragment	FALSE	canonical	3	39	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAAATGTATGTAACC	NA	False	NA	NA	False	ATTAAA	-8	NA	53363451	53357076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_53360071_53360962
ENSMUSG00000043004.14_0	chr14	-	3584	4	FSM	ENSMUSG00000043004.14	ENSMUST00000160013.8	3826	4	235	7	45	-7	multi-exon	FALSE	canonical	3	84	junction_3	22.3755819291179	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCATTTCCTACGGGGT	NA	False	NA	-11	True	AATAAA	-11	NA	20027082	19922633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_19926004_19941353_19941470_20010721_20010763_20027025
ENSMUSG00000043004.14_1	chr14	-	2155	1	ISM	ENSMUSG00000043004.14	ENSMUST00000160013.8	3826	4	102535	1	101979	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCTACGGGGTCACTTT	4549	False	NA	-5	True	AATAAA	-17	NA	19924782	19922627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_19922600_19924800
ENSMUSG00000043004.14_2	chr14	-	3425	2	ISM	ENSMUSG00000043004.14	ENSMUST00000160013.8	3826	4	85915	1	85359	-1	3prime_fragment	FALSE	canonical	3	136	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCTACGGGGTCACTTT	NA	False	NA	-5	True	AATAAA	-17	NA	19941402	19922627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_19926004_19941353
ENSMUSG00000043004.14_4	chr14	-	3531	3	ISM	ENSMUSG00000043004.14	ENSMUST00000160013.8	3826	4	16553	5	15997	-5	3prime_fragment	FALSE	canonical	3	95	junction_2	20.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATTTCCTACGGGGTCA	NA	False	NA	-9	True	AATAAA	-13	NA	20010764	19922631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_19926004_19941353_19941470_20010721
ENSMUSG00000043013.11_0	chr9	+	1892	2	FSM	ENSMUSG00000043013.11	ENSMUST00000056006.11	3957	2	-58	2123	-58	-702	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTTTTTAAAGACCAGGA	NA	False	NA	NA	False	ATTAAA	-11	NA	74769144	74796940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_74770684_74796587
ENSMUSG00000043015.16_0	chr1	+	3317	9	FSM	ENSMUSG00000043015.16	ENSMUST00000185483.7	2023	9	-11	-1283	-1	0	multi-exon	FALSE	canonical	3	20	junction_5	9.4794184948234	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGCTCCGAGTCAGTG	NA	False	NA	9	True	ATTAAA	-20	NA	52669894	52691078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_52670011_52676523_52676640_52679987_52680220_52680329_52680403_52681477_52681572_52682326_52682396_52684419_52684646_52687908_52688086_52688864
ENSMUSG00000043015.16_1	chr1	+	2849	5	FSM	ENSMUSG00000043015.16	ENSMUST00000185790.7	1571	5	-62	-1216	-2	-1	multi-exon	FALSE	canonical	1	5	junction_2	17.1537167984084	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGGGCTCCGAGTCAGT	NA	False	NA	8	True	ATTAAA	-19	NA	52669893	52691077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_52670011_52676523_52676640_52684419_52684646_52687908_52688086_52688864
ENSMUSG00000043015.16_11	chr1	+	3908	2	ISM	ENSMUSG00000043015.16	ENSMUST00000191076.2	805	3	2051	-1891	2051	-1	3prime_fragment	FALSE	canonical	3	41	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGGGCTCCGAGTCAGT	1658	False	NA	8	True	ATTAAA	-19	NA	52686390	52691077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_52688086_52688864
ENSMUSG00000043015.16_12	chr1	+	3259	3	FSM	ENSMUSG00000043015.16	ENSMUST00000191076.2	805	3	-562	-1892	-562	0	multi-exon	FALSE	canonical	3	41	junction_2	2.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGCTCCGAGTCAGTG	NA	False	NA	9	True	ATTAAA	-20	NA	52683777	52691078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_52684646_52687908_52688086_52688864
ENSMUSG00000043015.16_13	chr1	+	1976	1	ISM	ENSMUSG00000043015.16	ENSMUST00000165859.8	3396	9	19239	2	4761	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCTGGGCTCCGAGTCAG	4368	False	NA	7	True	ATTAAA	-18	NA	52689100	52691076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_52689100_52691100
ENSMUSG00000043015.16_2	chr1	+	3367	9	FSM	ENSMUSG00000043015.16	ENSMUST00000165859.8	3396	9	29	0	-5	0	multi-exon	FALSE	canonical	3	30	junction_5	7.49061913328932	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGCTCCGAGTCAGTG	NA	False	NA	9	True	ATTAAA	-20	NA	52669890	52691078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_52670011_52676523_52676640_52679987_52680220_52680329_52680403_52681477_52681572_52682280_52682396_52684419_52684646_52687908_52688086_52688864
ENSMUSG00000043015.16_3	chr1	+	2627	4	NIC	ENSMUSG00000043015.16	novel	1571	5	NA	NA	-12	-7	combination_of_known_junctions	FALSE	canonical	1	5	junction_2	18.263503375737	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTCCCTGGGCTCCGA	NA	False	NA	2	True	ATTAAA	-13	NA	52669883	52691071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_52670011_52676523_52676640_52687908_52688086_52688864
ENSMUSG00000043019.13_0	chr1	+	6335	20	FSM	ENSMUSG00000043019.13	ENSMUST00000059498.12	6327	20	-9	1	-6	-1	multi-exon	FALSE	canonical	3	102	junction_16	20.6122358303988	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTAGTTTTAAATTTCA	NA	False	NA	6	True	AATAAA	-15	NA	151631115	151697801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_151631479_151635488_151635535_151646582_151646684_151647160_151647201_151651607_151651721_151653156_151653311_151658123_151658259_151660489_151660596_151668078_151668177_151670426_151670553_151670730_151670815_151671816_151671901_151672533_151672659_151680028_151680195_151680415_151680571_151681600_151681755_151683116_151683309_151683954_151684121_151687269_151687456_151694060
ENSMUSG00000043019.13_3	chr1	+	6285	20	NIC	ENSMUSG00000043019.13	novel	3127	21	NA	NA	-13	-1	combination_of_known_junctions	TRUE	canonical	3	23	junction_16	31.4765884947638	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTAGTTTTAAATTTCA	NA	False	NA	6	True	AATAAA	-15	NA	151631108	151697801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_151631479_151635488_151635535_151646582_151646684_151647160_151647201_151651607_151651721_151653156_151653311_151658123_151658259_151660489_151660596_151668078_151668177_151670426_151670553_151670730_151670815_151671816_151671901_151672533_151672659_151680028_151680195_151680415_151680571_151681600_151681698_151683116_151683309_151683954_151684121_151687269_151687456_151694060
ENSMUSG00000043019.13_33	chr1	+	2681	1	Genic_Genomic	ENSMUSG00000043019.13	novel	NA	NA	NA	NA	63915	4	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTTTAAATTTCAAATTT	NA	False	NA	11	True	AATAAA	-20	NA	151695125	151697806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_+_151695100_151697800
ENSMUSG00000043019.13_4	chr1	+	6350	20	NIC	ENSMUSG00000043019.13	novel	6327	20	NA	NA	-12	5	combination_of_known_junctions	FALSE	canonical	3	7	junction_15	34.8339949218585	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTAAATTTCAAATTTT	NA	False	NA	12	True	AATAAA	-21	NA	151631109	151697807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_151631479_151635488_151635535_151646582_151646684_151647160_151647201_151651607_151651721_151653156_151653311_151658123_151658259_151660489_151660596_151668078_151668177_151670426_151670553_151670730_151670815_151671816_151671901_151672533_151672659_151680028_151680195_151680415_151680571_151681597_151681755_151683116_151683309_151683954_151684121_151687269_151687456_151694060
ENSMUSG00000043024.7_1	chr6	-	2191	1	FSM	ENSMUSG00000043024.7	ENSMUST00000062429.7	1984	1	-68	-139	-68	139	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATTTTATCATTGTTAAA	NA	False	NA	NA	False	CATAAA	-2	NA	108542617	108540426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_108540400_108542600
ENSMUSG00000043029.3_0	chr11	+	1763	1	ISM	ENSMUSG00000043029.3	ENSMUST00000049676.3	5835	18	31212	1	31212	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTATGGTCATGTTTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	73189425	73191188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_73189400_73191200
ENSMUSG00000043029.3_3	chr11	+	1991	4	ISM	ENSMUSG00000043029.3	ENSMUST00000049676.3	5835	18	27660	1885	27660	-1885	3prime_fragment	FALSE	canonical	0	0	junction_2	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGATTTGAGATGGAAC	8625	False	NA	NA	False	AGTAAA	-12	NA	73185873	73189304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_73186296_73187254_73187368_73187553_73187634_73187928
ENSMUSG00000043036.14_4	chr5	-	176	1	Genic_Genomic	ENSMUSG00000043036.15	novel	NA	NA	NA	NA	261	58	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAATATTTTTTTAAAAA	NA	False	NA	-10	True	NA	NA	NA	122272617	122272441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_-_122272400_122272600
ENSMUSG00000043059.17_0	chr5	-	2167	4	FSM	ENSMUSG00000043059.17	ENSMUST00000114590.8	2228	4	55	6	-23	-4	multi-exon	FALSE	canonical	3	184	junction_2	5.79271573232759	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGAGCCATGTCTCTGCT	NA	False	NA	-23	True	AATAAA	-10	NA	31359592	31356330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31357492_31357578_31358167_31358926_31359083_31359330
ENSMUSG00000043059.17_1	chr5	-	2106	3	FSM	ENSMUSG00000043059.17	ENSMUST00000031562.11	2213	3	103	4	103	-4	multi-exon	FALSE	canonical	3	184	junction_2	7	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGAGCCATGTCTCTGCT	NA	False	NA	-23	True	AATAAA	-10	NA	31359283	31356330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31357492_31357578_31358167_31358926
ENSMUSG00000043059.17_4	chr5	-	1434	2	ISM	ENSMUSG00000043059.17	ENSMUST00000200992.4	530	3	260	-899	-216	-1	3prime_fragment	FALSE	canonical	3	198	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATGTCTCTGCTGAATT	NA	False	NA	-18	True	AATAAA	-15	NA	31357846	31356325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_31357492_31357578
ENSMUSG00000043061.11_12	chr12	+	5433	3	FSM	ENSMUSG00000043061.11	ENSMUST00000218826.2	762	3	-2434	-2237	54	0	multi-exon	FALSE	canonical	3	172	junction_2	9.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACAGTGTGCTTTCGT	NA	False	NA	NA	False	AATAAA	-12	NA	30634478	30641214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_30637254_30638472_30638567_30638650
ENSMUSG00000043061.11_13	chr12	+	2940	5	FSM	ENSMUSG00000043061.11	ENSMUST00000057151.10	2971	5	29	2	29	-2	multi-exon	FALSE	canonical	3	167	junction_1	9.17877987534291	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATATACAGTGTGCTTTC	NA	False	NA	NA	False	AATAAA	-10	NA	30634453	30641212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650
ENSMUSG00000043061.11_14	chr12	+	2573	6	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	81	junction_5	38.6812616133445	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACAGTGTGCTTTCGT	NA	False	NA	NA	False	AATAAA	-12	NA	30634447	30641214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650_30640423_30640797
ENSMUSG00000043061.11_24	chr12	+	2003	1	ISM	ENSMUSG00000043061.11	ENSMUST00000057151.10	2971	5	4787	0	2299	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACAGTGTGCTTTCGT	NA	False	NA	NA	False	AATAAA	-12	NA	30639211	30641214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_30639200_30641200
ENSMUSG00000043065.13_0	chr16	+	3043	18	FSM	ENSMUSG00000043065.13	ENSMUST00000050897.7	4627	18	317	1267	24	87	multi-exon	FALSE	canonical	0	0	junction_1	35.5942143737688	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAACGTGATACTTTTT	6425	False	NA	11	True	AATAAA	-16	NA	44167800	44207593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
ENSMUSG00000043065.13_1	chr16	+	3272	17	NIC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	15	89	intron_retention	FALSE	canonical	0	0	junction_1	36.6614046887186	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACGTGATACTTTTTTT	6416	False	NA	13	True	AATAAA	-18	NA	44167791	44207595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
ENSMUSG00000043065.13_13	chr16	+	2992	17	NIC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	27	87	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	48.2833029498811	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAACGTGATACTTTTT	6428	False	NA	11	True	AATAAA	-16	NA	44167803	44207593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_44167870_44175802_44175899_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
ENSMUSG00000043065.13_2	chr16	+	2908	16	NIC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	15	87	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	37.8355505958204	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAACGTGATACTTTTT	6416	False	NA	11	True	AATAAA	-16	NA	44167791	44207593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_44167870_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
ENSMUSG00000043067.16_0	chr9	-	3509	23	FSM	ENSMUSG00000043067.16	ENSMUST00000142064.8	3489	23	-45	25	-45	0	multi-exon	TRUE	canonical	3	87	junction_1	49.1071732317176	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAAAAAAACATG	NA	False	NA	-30	True	NA	NA	NA	24414481	24323098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_24324283_24325533_24325720_24332376_24332503_24333555_24333656_24334308_24334484_24336021_24336142_24337429_24337455_24341726_24341777_24343655_24343728_24345634_24345737_24349924_24350006_24350424_24350485_24352050_24352138_24359082_24359161_24361951_24362052_24365101_24365194_24373872_24373931_24385069_24385164_24386628_24386750_24393224_24393363_24396309_24396398_24397000_24397026_24414134
ENSMUSG00000043067.16_2	chr9	-	4763	22	FSM	ENSMUSG00000043067.16	ENSMUST00000170356.2	4715	22	-48	0	-48	0	multi-exon	FALSE	canonical	3	255	junction_7	22.7832137753209	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAAAAAAACATG	NA	False	NA	-30	True	NA	NA	NA	24414484	24323098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_24325720_24332376_24332503_24333555_24333656_24334308_24334484_24336021_24336142_24337429_24337455_24341726_24341777_24343655_24343728_24345634_24345737_24349924_24350006_24350424_24350485_24352050_24352138_24359082_24359161_24361951_24362052_24365101_24365194_24373872_24373931_24385069_24385164_24386628_24386750_24393224_24393363_24396309_24396398_24397000_24397026_24414134
ENSMUSG00000043067.16_5	chr9	-	1934	1	ISM	ENSMUSG00000043067.16	ENSMUST00000115277.9	4747	23	74178	27	10223	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAAAAAAACATG	NA	False	NA	-30	True	NA	NA	NA	24325032	24323098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_24323100_24325000
ENSMUSG00000043068.7_0	chr8	-	1344	2	FSM	ENSMUSG00000043068.7	ENSMUST00000055257.7	1338	2	-14	8	-14	-8	multi-exon	FALSE	canonical	2	6	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTCACCCTCTGTGGTT	NA	False	NA	NA	False	ATTAAA	-12	NA	125478585	125467003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_125468041_125478278
ENSMUSG00000043079.18_1	chr18	-	4936	3	FSM	ENSMUSG00000043079.18	ENSMUST00000097566.10	5060	3	108	16	8	1	multi-exon	FALSE	canonical	0	0	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGCCTCCTGTTCGTC	NA	False	NA	NA	False	AATAAA	-13	NA	60757300	60727060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_60729561_60735184_60737563_60757242
ENSMUSG00000043085.15_1	chr4	-	3203	4	NIC	ENSMUSG00000043085.15	novel	2478	5	NA	NA	-50	2	intron_retention	FALSE	canonical	3	77	junction_1	16.391054470859	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGCGTTGAGGATCACA	NA	False	NA	-6	True	AATAAA	-14	NA	141345342	141341545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_141342018_141342255_141344781_141344950_141345024_141345209
ENSMUSG00000043085.15_11	chr4	-	3612	2	NIC	ENSMUSG00000043085.15	novel	2478	5	NA	NA	-51	2	intron_retention	FALSE	canonical	3	109	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGCGTTGAGGATCACA	NA	False	NA	-6	True	AATAAA	-14	NA	141345343	141341545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_141345024_141345209
ENSMUSG00000043085.15_2	chr4	-	1463	6	FSM	ENSMUSG00000043085.15	ENSMUST00000053263.9	1671	6	206	2	-51	2	multi-exon	FALSE	canonical	3	57	junction_2	22.4535075210979	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGCGTTGAGGATCACA	NA	False	NA	-6	True	AATAAA	-14	NA	141345343	141341545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141342018_141342255_141342447_141343514_141343933_141344605_141344781_141344950_141345024_141345209
ENSMUSG00000043085.15_3	chr4	-	2530	5	FSM	ENSMUSG00000043085.15	ENSMUST00000156246.2	2478	5	-50	-2	-50	2	multi-exon	FALSE	canonical	3	69	junction_2	19.536824204563	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGCGTTGAGGATCACA	NA	False	NA	-6	True	AATAAA	-14	NA	141345342	141341545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141342018_141342255_141343933_141344605_141344781_141344950_141345024_141345209
ENSMUSG00000043085.15_9	chr4	-	1565	2	ISM	ENSMUSG00000043085.15	ENSMUST00000156246.2	2478	5	1944	-2	1944	2	3prime_fragment	FALSE	canonical	3	77	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGCGTTGAGGATCACA	NA	False	NA	-6	True	AATAAA	-14	NA	141343348	141341545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141342018_141342255
ENSMUSG00000043090.19_1	chr8	-	2542	1	NIC	ENSMUSG00000043090.19	novel	2680	6	NA	NA	11044	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGCACTTGTGTCAAAT	NA	False	NA	-9	True	NA	NA	NA	70216517	70213975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70214000_70216500
ENSMUSG00000043090.19_2	chr8	-	5743	4	FSM	ENSMUSG00000043090.19	ENSMUST00000137573.2	3245	4	16	-2514	16	-3	multi-exon	FALSE	canonical	3	29	junction_1	2.44948974278318	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGCTGCACTTGTGTCA	6885	False	NA	-12	True	NA	NA	NA	70227545	70213978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70219428_70220282_70220344_70221770_70221898_70227439
ENSMUSG00000043090.19_9	chr8	-	1497	1	ISM	ENSMUSG00000043090.19	ENSMUST00000137573.2	3245	4	8652	920	8652	-920	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGCACTTGGGTGGAAT	NA	False	NA	NA	False	NA	NA	NA	70218909	70217412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_70217400_70218900
ENSMUSG00000043091.10_0	chr15	+	1552	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	430	0	0	0	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCATCTGGTTCATA	NA	False	NA	15	True	AATAAA	-22	NA	98928201	98935991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
ENSMUSG00000043091.10_2	chr15	+	1364	3	ISM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	4285	2	3855	-2	3prime_fragment	FALSE	canonical	3	5541	junction_1	3299.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAACTGGCATCTGGTTCA	NA	False	NA	13	True	AATAAA	-20	NA	98932056	98935989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98932198_98932329_98932479_98934915
ENSMUSG00000043091.10_5	chr15	+	1165	2	ISM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	4617	1	4187	-1	3prime_fragment	FALSE	canonical	3	12140	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGGCATCTGGTTCAT	NA	False	NA	14	True	AATAAA	-21	NA	98932388	98935990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98932479_98934915
ENSMUSG00000043091.10_6	chr15	+	491	1	ISM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	7728	1	7298	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGGCATCTGGTTCAT	842	False	NA	14	True	AATAAA	-21	NA	98935499	98935990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_98935500_98936000
ENSMUSG00000043099.5_0	chr11	-	3136	2	FSM	ENSMUSG00000043099.6	ENSMUST00000055619.6	3497	2	348	13	348	-13	multi-exon	TRUE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTCCCTATAATCCTGTG	6851	False	NA	NA	False	AATAAA	-10	NA	75059997	75055403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_75058371_75059828
ENSMUSG00000043110.3_0	chr2	-	3668	4	ISM	ENSMUSG00000043110.3	ENSMUST00000049787.3	3715	5	917	8	917	-8	3prime_fragment	FALSE	canonical	3	9	junction_1	2.86744175568088	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGGACAGGATGTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	132721894	132710232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_132712824_132713946_132714079_132719932_132720138_132721154
ENSMUSG00000043110.3_1	chr2	-	3716	5	FSM	ENSMUSG00000043110.3	ENSMUST00000049787.3	3715	5	-8	7	-8	-7	multi-exon	FALSE	canonical	3	9	junction_1	2.48746859276655	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGACAGGATGTATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	132722819	132710231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_132712824_132713946_132714079_132719932_132720138_132721154_132721836_132722713
ENSMUSG00000043131.15_0	chr6	+	4280	6	FSM	ENSMUSG00000043131.15	ENSMUST00000055261.11	4412	6	42	90	22	-89	multi-exon	FALSE	canonical	3	250	junction_4	40.3554209493595	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCAAAAATGCCTTTGAA	NA	False	NA	8	True	AATAAA	-9	NA	83303039	83320668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83303250_83306848_83307016_83309435_83309530_83311057_83311192_83315262_83315427_83317157
ENSMUSG00000043131.15_12	chr6	+	2377	1	ISM	ENSMUSG00000043131.15	ENSMUST00000055261.11	4412	6	15294	90	14950	-89	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCAAAAATGCCTTTGAA	1033	False	NA	8	True	AATAAA	-9	NA	83318291	83320668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_83318300_83320700
ENSMUSG00000043140.11_0	chr16	-	2694	2	FSM	ENSMUSG00000043140.11	ENSMUST00000052505.10	3391	2	42	655	42	-655	multi-exon	FALSE	canonical	3	58	junction_1	0	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAAAGTGTTTGTGGGTT	NA	False	NA	NA	False	AATACA	-9	NA	8455534	8451747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_8454257_8455349
ENSMUSG00000043140.11_1	chr16	-	2479	1	ISM	ENSMUSG00000043140.11	ENSMUST00000052505.10	3391	2	1352	653	1352	-653	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTGTTTGTGGGTTAG	NA	False	NA	NA	False	AATACA	-11	NA	8454224	8451745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_8451700_8454200
ENSMUSG00000043153.7_0	chr12	+	2625	10	FSM	ENSMUSG00000043153.7	ENSMUST00000062041.6	2690	10	65	0	1	0	multi-exon	FALSE	canonical	3	10	junction_5	4.59468291736341	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATGTCTCCTACAACAT	NA	False	NA	NA	False	AATAAA	-14	NA	36431582	36739443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_36432024_36440344_36440622_36476287_36476438_36523100_36523206_36526698_36526745_36551976_36552072_36571431_36571522_36571957_36572051_36597827_36597960_36738247
ENSMUSG00000043153.7_1	chr12	+	2799	5	FSM	ENSMUSG00000043153.7	ENSMUST00000220519.2	3122	5	322	1	119	-1	multi-exon	FALSE	canonical	3	12	junction_1	4.38035386698381	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGAAAACTTGGAGTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	36431874	36528816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_36432024_36440344_36440622_36476287_36476438_36523100_36523206_36526698
ENSMUSG00000043154.16_0	chr9	-	5033	13	ISM	ENSMUSG00000043154.16	ENSMUST00000075941.12	6786	14	39649	203	-309	-1	3prime_fragment	FALSE	canonical	3	23	junction_1	6.16216051577872	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTATCATATCTGTTACTG	NA	False	NA	NA	False	AATAAA	-20	NA	101089345	100982485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_100985169_101002221_101002329_101003507_101003627_101004095_101004272_101021509_101021600_101022673_101022723_101025780_101025938_101030986_101031074_101052526_101052602_101057533_101057637_101063131_101063236_101071357_101071625_101088329
ENSMUSG00000043154.16_1	chr9	-	6616	14	FSM	ENSMUSG00000043154.16	ENSMUST00000075941.12	6786	14	-33	203	-33	-1	multi-exon	FALSE	canonical	3	23	junction_1	6.00788436608204	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTATCATATCTGTTACTG	NA	False	NA	NA	False	AATAAA	-20	NA	101129027	100982485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_100985169_101002221_101002329_101003507_101003627_101004095_101004272_101021509_101021600_101022673_101022723_101025780_101025938_101030986_101031074_101052526_101052602_101057533_101057637_101063131_101063236_101071357_101071625_101088329_101090762_101128860
ENSMUSG00000043154.16_2	chr9	-	4189	13	NIC	ENSMUSG00000043154.16	novel	6786	14	NA	NA	-38	-1	combination_of_known_splicesites	FALSE	canonical	1	3	junction_12	10.758717395675	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTATCATATCTGTTACTG	NA	False	NA	NA	False	AATAAA	-20	NA	101129032	100982485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_100985169_101002221_101002329_101003507_101003627_101004095_101004272_101021509_101021600_101022673_101022723_101025780_101025938_101030986_101031074_101052526_101052602_101057533_101057637_101063131_101063236_101071357_101071625_101128860
ENSMUSG00000043154.16_4	chr9	-	1080	1	ISM	ENSMUSG00000043154.16	ENSMUST00000075941.12	6786	14	145429	203	18759	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTATCATATCTGTTACTG	4425	False	NA	NA	False	AATAAA	-20	NA	100983565	100982485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_100982500_100983600
ENSMUSG00000043154.16_5	chr9	-	3757	10	ISM	ENSMUSG00000043154.16	ENSMUST00000066773.9	4461	13	18710	-184	18488	-18	3prime_fragment	FALSE	canonical	3	23	junction_1	6.78232998312527	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCGTTCACTCTGCAGT	NA	False	NA	NA	False	AATAAA	-19	NA	101057562	100982300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_100985169_101002221_101002329_101003507_101003627_101004095_101004272_101021509_101021600_101022673_101022723_101025780_101025938_101030986_101031074_101052526_101052602_101057533
ENSMUSG00000043154.16_7	chr9	-	5662	13	ISM	ENSMUSG00000043154.16	ENSMUST00000075941.12	6786	14	-28	18205	-28	956	5prime_fragment	FALSE	canonical	3	27	junction_1	5.20416499866533	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGTAGCTTTGTTTCTT	NA	False	NA	NA	False	ATTAAA	-20	NA	101129022	101000487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_101002329_101003507_101003627_101004095_101004272_101021509_101021600_101022673_101022723_101025780_101025938_101030986_101031074_101052526_101052602_101057533_101057637_101063131_101063236_101071357_101071625_101088329_101090762_101128860
ENSMUSG00000043154.16_8	chr9	-	173	1	Genic_Genomic	ENSMUSG00000043154.16	novel	NA	NA	NA	NA	-37	-45467	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCGCACAGACGCGGGGCC	NA	False	NA	NA	False	NA	NA	NA	101129031	101128858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_-_101128900_101129000
ENSMUSG00000043155.5_0	chr4	-	1609	1	FSM	ENSMUSG00000043155.5	ENSMUST00000055436.5	1804	1	192	3	192	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCTGAGCCTCTGTGT	7280	False	NA	-9	True	AATAAA	-23	NA	116678712	116677103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116677100_116678700
ENSMUSG00000043157.9_0	chr14	+	1493	2	FSM	ENSMUSG00000043157.9	ENSMUST00000055159.8	1482	2	-2	-9	-2	9	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCATGTGTGTGCATGTGT	NA	False	NA	NA	False	AATAAA	-27	NA	61547199	61549394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_61547387_61548088
ENSMUSG00000043162.8_0	chr6	-	779	2	FSM	ENSMUSG00000043162.8	ENSMUST00000053386.6	3573	2	21	2773	21	-2773	multi-exon	FALSE	canonical	3	182	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGATCTGTTTGTCTTA	NA	False	NA	NA	False	TATAAA	-15	NA	57669042	57666333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_57666864_57668793
ENSMUSG00000043183.19_0	chr13	+	4797	10	FSM	ENSMUSG00000043183.19	ENSMUST00000121401.8	4819	10	15	7	-10	-7	multi-exon	FALSE	canonical	3	26	junction_3	7.33333333333333	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACAATCTTAGACTCCAG	NA	False	NA	10	True	AATAAA	-10	NA	54651606	54699096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_54651818_54671782_54674486_54676116_54676350_54676966_54677037_54684894_54685050_54687516_54687670_54689236_54689366_54694789_54694947_54695067_54695153_54698195
ENSMUSG00000043183.19_11	chr13	+	3805	9	ISM	ENSMUSG00000043183.19	ENSMUST00000121401.8	4819	10	20972	7	-4186	-7	3prime_fragment	FALSE	canonical	3	26	junction_2	7.32184232280374	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACAATCTTAGACTCCAG	NA	False	NA	10	True	AATAAA	-10	NA	54672563	54699096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_54674486_54676116_54676350_54676966_54677037_54684894_54685050_54687516_54687670_54689236_54689366_54694789_54694947_54695067_54695153_54698195
ENSMUSG00000043183.19_2	chr13	+	3644	6	ISM	ENSMUSG00000043183.19	ENSMUST00000121401.8	4819	10	14	11316	-11	1	5prime_fragment	FALSE	canonical	3	26	junction_3	5.98665181883831	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54651605	54687787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_54651818_54671782_54674486_54676116_54676350_54676966_54677037_54684894_54685050_54687516
ENSMUSG00000043190.15_2	chr13	-	1083	4	FSM	ENSMUSG00000043190.15	ENSMUST00000179078.9	1436	4	100	253	-8	-6	multi-exon	FALSE	canonical	0	0	junction_3	36.2981481009094	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATTTTAAAGTAATTT	NA	False	NA	-15	True	NA	NA	NA	76166689	76150891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166133
ENSMUSG00000043190.15_3	chr13	-	1559	4	FSM	ENSMUSG00000043190.15	ENSMUST00000050997.2	2807	4	10	1238	10	-6	multi-exon	FALSE	canonical	3	34	junction_3	20.2703943940144	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATTTTAAAGTAATTT	NA	False	NA	-15	True	NA	NA	NA	76166671	76150891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76165639
ENSMUSG00000043190.15_5	chr13	-	545	4	FSM	ENSMUSG00000043190.15	ENSMUST00000167271.9	595	4	42	8	-7	-8	multi-exon	FALSE	canonical	2	9	junction_3	32.0555074137902	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAATATTTTAAAGTAAT	NA	False	NA	-17	True	NA	NA	NA	76166796	76150893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166776
ENSMUSG00000043207.11_0	chr4	-	3378	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	46	5	46	-5	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTACGTCCTGGTGTTGGG	NA	False	NA	-6	True	ATTAAA	-15	NA	120955392	120916438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
ENSMUSG00000043207.11_3	chr4	-	1392	1	ISM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	37612	1	17109	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGTCCTGGTGTTGGGTTTG	7165	False	NA	-2	True	ATTAAA	-19	NA	120917826	120916434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_120916400_120917800
ENSMUSG00000043241.15_0	chr2	+	5155	22	NIC	ENSMUSG00000043241.15	novel	5174	22	NA	NA	9	-2	combination_of_known_junctions	TRUE	canonical	3	51	junction_18	43.3799853532905	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGGCATGATTTGTTTT	1687	False	NA	10	True	AATAAA	-14	NA	5956288	6061507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_5956365_5962281_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093_6028280_6030925_6031130_6032023_6032300_6034172_6034357_6038922_6039063_6044919_6045022_6045273_6045373_6051711_6051877_6055148_6055291_6056319_6056441_6060243
ENSMUSG00000043241.15_1	chr2	+	5157	22	FSM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	10	7	10	-2	multi-exon	FALSE	canonical	3	171	junction_5	24.2975694686972	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGGCATGATTTGTTTT	1688	False	NA	10	True	AATAAA	-14	NA	5956289	6061507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_5956365_5962281_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093_6028280_6030925_6031130_6032023_6032300_6034172_6034357_6038922_6039063_6044919_6045022_6045273_6045373_6051708_6051877_6055148_6055291_6056319_6056441_6060243
ENSMUSG00000043241.15_27	chr2	+	4989	21	ISM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	6094	8	6094	-3	3prime_fragment	FALSE	canonical	3	171	junction_4	24.345225404584	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTTGGCATGATTTGTTT	4765	False	NA	9	True	AATAAA	-13	NA	5962373	6061506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093_6028280_6030925_6031130_6032023_6032300_6034172_6034357_6038922_6039063_6044919_6045022_6045273_6045373_6051708_6051877_6055148_6055291_6056319_6056441_6060243
ENSMUSG00000043251.7_0	chr8	-	1525	10	ISM	ENSMUSG00000043251.7	ENSMUST00000212777.2	2161	13	2381	-2	-308	0	3prime_fragment	FALSE	canonical	3	15	junction_4	5.43877255578685	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGAATCTATGTGTTG	NA	False	NA	-1	True	AATAAA	-15	NA	106020191	106016555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883
ENSMUSG00000043251.7_14	chr8	-	2383	13	ISM	ENSMUSG00000043251.7	ENSMUST00000057855.4	2497	14	312	1	154	-1	3prime_fragment	FALSE	canonical	3	11	junction_12	6.37486383296843	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTCTGAATCTATGTGTT	NA	False	NA	-2	True	AATAAA	-14	NA	106022418	106016556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106021891_106022068_106022257
ENSMUSG00000043251.7_5	chr8	-	2344	13	FSM	ENSMUSG00000043251.7	ENSMUST00000212777.2	2161	13	-183	0	-22	0	multi-exon	FALSE	canonical	1	4	junction_11	8.1594355741613	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGTCTGAATCTATGTGT	NA	False	NA	-3	True	AATAAA	-13	NA	106022755	106016557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106022257_106022339_106022537
ENSMUSG00000043251.7_7	chr8	-	2499	14	FSM	ENSMUSG00000043251.7	ENSMUST00000057855.4	2497	14	-4	2	-1	0	multi-exon	FALSE	canonical	3	7	junction_13	7.19467258528611	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGTCTGAATCTATGTGT	NA	False	NA	-3	True	AATAAA	-13	NA	106022734	106016557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106021891_106022068_106022257_106022339_106022537
ENSMUSG00000043252.9_0	chr4	+	3313	3	FSM	ENSMUSG00000043252.9	ENSMUST00000062684.9	4670	3	-53	1410	-53	-1410	multi-exon	FALSE	canonical	3	428	junction_2	4.5	1017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGATTGACAATTTCTAAA	3	True	NA	10	True	AATAAA	-21	NA	15265777	15285343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_15266750_15281006_15281163_15283158
ENSMUSG00000043252.9_7	chr4	+	2832	1	ISM	ENSMUSG00000043252.9	ENSMUST00000062684.9	4670	3	18085	6	18085	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTCTTCTCTCTTCTCT	NA	False	NA	12	True	AATAAA	-13	NA	15283915	15286747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_15283900_15286700
ENSMUSG00000043257.16_1	chr4	-	2426	1	Genic_Genomic	ENSMUSG00000043257.16	novel	NA	NA	NA	NA	10290	455	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCAGACACTCTGAGGA	NA	False	NA	-24	True	NA	NA	NA	133389668	133387242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_-_133387200_133389700
ENSMUSG00000043257.16_2	chr4	-	2909	4	FSM	ENSMUSG00000043257.16	ENSMUST00000062118.11	3979	4	27	1043	27	824	multi-exon	FALSE	canonical	3	62	junction_1	27.7248384425711	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGCACAGGGTCTGAAT	NA	False	NA	-17	True	AGTAAA	-41	NA	133399931	133388740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133390103_133391968_133393091_133397048_133397172_133399629
ENSMUSG00000043257.16_3	chr4	-	1788	3	FSM	ENSMUSG00000043257.16	ENSMUST00000067902.13	990	3	28	-826	28	826	multi-exon	FALSE	canonical	3	52	junction_1	36	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCACAGGGTCTGAATCT	NA	False	NA	-15	True	AGTAAA	-43	NA	133399930	133388738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133390103_133397048_133397172_133399629
ENSMUSG00000043257.16_6	chr4	-	2298	2	ISM	ENSMUSG00000043257.16	ENSMUST00000062118.11	3979	4	7058	1039	7058	828	3prime_fragment	FALSE	canonical	3	62	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGGGTCTGAATCTTG	NA	False	NA	-13	True	AGTAAA	-45	NA	133392900	133388736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133390103_133391968
ENSMUSG00000043259.16_0	chr10	+	3196	15	FSM	ENSMUSG00000043259.16	ENSMUST00000105436.9	3380	15	184	0	20	0	multi-exon	FALSE	canonical	3	12	junction_12	8.58332507759989	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTATTATGTTGAAAGC	9870	False	NA	NA	False	AATAAA	-14	NA	70276681	70394559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_70276729_70276866_70276906_70284587_70284645_70286856_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388858_70389056_70390317_70390420_70393069
ENSMUSG00000043259.16_1	chr10	+	3225	15	NIC	ENSMUSG00000043259.16	novel	3380	15	NA	NA	-15	-3	combination_of_known_junctions	FALSE	canonical	3	19	junction_8	7.71329358699535	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATATTTATTATGTTGAA	9835	False	NA	NA	False	AATAAA	-11	NA	70276646	70394556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_70276729_70276866_70276906_70284587_70284645_70286856_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388861_70389056_70390317_70390420_70393069
ENSMUSG00000043259.16_20	chr10	+	3050	12	ISM	ENSMUSG00000043259.16	ENSMUST00000173042.9	3310	14	10144	10	10098	-3	3prime_fragment	FALSE	canonical	3	19	junction_5	6.78841989185253	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATATTTATTATGTTGAA	1345	False	NA	NA	False	AATAAA	-11	NA	70286853	70394556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388861_70389056_70390317_70390420_70393069
ENSMUSG00000043259.16_22	chr10	+	2961	9	ISM	ENSMUSG00000043259.16	ENSMUST00000173042.9	3310	14	79604	5	79558	0	3prime_fragment	FALSE	canonical	3	19	junction_2	6.9462219947249	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATTATGTTGAAAGCAC	NA	False	NA	NA	False	AATAAA	-16	NA	70356313	70394561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388861_70389056_70390317_70390420_70393069
ENSMUSG00000043259.16_6	chr10	+	3283	14	FSM	ENSMUSG00000043259.16	ENSMUST00000062883.7	3262	14	-23	2	-12	0	multi-exon	FALSE	canonical	3	12	junction_11	8.57062549069641	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTATTATGTTGAAAGC	9921	False	NA	NA	False	AATAAA	-14	NA	70276732	70394559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_70276906_70284587_70284645_70286856_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388858_70389056_70390317_70390420_70393069
ENSMUSG00000043259.16_8	chr10	+	3267	14	FSM	ENSMUSG00000043259.16	ENSMUST00000173042.9	3310	14	36	7	1	0	multi-exon	FALSE	canonical	3	19	junction_7	7.58072922754149	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTATTATGTTGAAAGC	9934	False	NA	NA	False	AATAAA	-14	NA	70276745	70394559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_70276906_70284587_70284645_70286856_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388861_70389056_70390317_70390420_70393069
ENSMUSG00000043262.17_1	chr7	-	4225	12	FSM	ENSMUSG00000043262.17	ENSMUST00000094398.13	4616	12	65	326	0	-3	multi-exon	FALSE	canonical	2	49	junction_10	11.9551503476414	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCTATGTGAAAGGAAAC	NA	False	NA	-11	True	AATAAA	-16	NA	46608210	46573289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
ENSMUSG00000043262.17_15	chr7	-	4325	11	NIC	ENSMUSG00000043262.17	novel	4616	12	NA	NA	-6	-851	intron_retention	FALSE	canonical	2	49	junction_9	11.4699607671517	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTAGGTGTTTTTCTA	NA	False	NA	NA	False	AGTAAA	-13	NA	46608226	46574137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
ENSMUSG00000043262.17_3	chr7	-	4339	14	NNC	ENSMUSG00000043262.17	novel	4616	12	NA	NA	-5	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.1260480941677	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGACTATCTGCTGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	46608225	46572970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_46573513_46573550_46574092_46574273_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
ENSMUSG00000043262.17_7	chr7	-	2883	1	ISM	ENSMUSG00000043262.17	ENSMUST00000094398.13	4616	12	32422	7	29932	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGACTATCTGCTGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	46575853	46572970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_46573000_46575900
ENSMUSG00000043279.10_0	chr5	-	3540	1	ISM	ENSMUSG00000043279.10	ENSMUST00000054384.6	9279	3	7018	6	7018	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAATTACTCTTGTGTAC	8719	False	NA	NA	False	AATAAA	-21	NA	137138043	137134503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137134500_137138000
ENSMUSG00000043284.13_0	chr11	-	959	2	FSM	ENSMUSG00000043284.13	ENSMUST00000062677.12	1457	2	496	2	11	-2	multi-exon	FALSE	canonical	3	675	junction_1	0	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTCTGTTCTCTTTTCTG	7845	False	NA	-7	True	ATTAAA	-15	NA	60769602	60755279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60756175_60769538
ENSMUSG00000043284.13_1	chr11	-	873	1	ISM	ENSMUSG00000043284.13	ENSMUST00000168218.8	1511	3	13711	3	13460	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTTCTGTTCTCTTTTCT	NA	False	NA	-8	True	ATTAAA	-14	NA	60756153	60755280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_60755300_60756200
ENSMUSG00000043284.13_4	chr11	-	1245	3	FSM	ENSMUSG00000043284.13	ENSMUST00000168218.8	1511	3	262	4	11	-4	multi-exon	FALSE	canonical	3	26	junction_1	10	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACTTCTGTTCTCTTTTC	7845	False	NA	-9	True	ATTAAA	-13	NA	60769602	60755281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_60756175_60766585_60766874_60769538
ENSMUSG00000043289.13_0	chr9	+	2044	5	FSM	ENSMUSG00000043289.13	ENSMUST00000057067.10	2670	5	57	569	18	-1	multi-exon	FALSE	canonical	3	28	junction_2	8.4372685153431	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGTACTGGTTGAATTT	NA	False	NA	NA	False	AATAAA	-17	NA	81745779	81908510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_81745971_81772174_81772421_81809150_81809687_81861178_81861311_81907571
ENSMUSG00000043289.13_1	chr9	+	1876	4	FSM	ENSMUSG00000043289.13	ENSMUST00000189391.2	1817	4	-59	0	-20	0	multi-exon	FALSE	canonical	0	0	junction_1	20.6774165590278	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTACTGGTTGAATTTT	NA	False	NA	NA	False	AATAAA	-18	NA	81745702	81908511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_81745971_81809150_81809687_81861178_81861311_81907571
ENSMUSG00000043290.7_0	chr7	-	2125	2	FSM	ENSMUSG00000043290.7	ENSMUST00000062428.5	2153	2	21	7	21	-7	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACAACGGAGTGTCTTGG	NA	False	NA	NA	False	AATAAA	-34	NA	5041424	5037444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_5039479_5041333
ENSMUSG00000043300.3_0	chr3	-	1947	3	FSM	ENSMUSG00000043300.3	ENSMUST00000061826.3	2028	3	61	20	61	-20	multi-exon	FALSE	canonical	3	41	junction_2	5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGTTTTTTAAAAATGTA	NA	False	NA	-19	True	ATTAAA	-21	NA	69506232	69481510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_69483294_69486658_69486725_69506134
ENSMUSG00000043300.3_2	chr3	-	2030	3	NNC	ENSMUSG00000043300.3	novel	2028	3	NA	NA	2669	-28	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	24	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTTTGTATAGTTTTTTA	NA	False	NA	-27	True	ATTAAA	-13	NA	69503624	69481518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_69483294_69486658_69486725_69503435
ENSMUSG00000043300.3_3	chr3	-	1505	1	Genic_Genomic	ENSMUSG00000043300.3	novel	NA	NA	NA	NA	23529	231	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGCAGAAAGGCCACCA	NA	False	NA	-9	True	AATAAA	-9	NA	69482764	69481259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_-_69481300_69482800
ENSMUSG00000043323.18_2	chr5	-	3985	18	FSM	ENSMUSG00000043323.18	ENSMUST00000198768.3	3934	18	81	-132	-18	132	multi-exon	FALSE	canonical	3	98	junction_9	64.5158171105307	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACAAGTTTCTAGAAACC	NA	False	NA	-15	True	ATTAAA	-20	NA	110596387	110510303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110511746_110518815_110519021_110519151_110519236_110519411_110519490_110522255_110522386_110523872_110523945_110524118_110524149_110524267_110524337_110525222_110525274_110525903_110526122_110526759_110526981_110527134_110527460_110529466_110529513_110543910_110543941_110563895_110563932_110565708_110565814_110580766_110580968_110595745
ENSMUSG00000043323.18_88	chr5	-	1643	1	ISM	ENSMUSG00000043323.18	ENSMUST00000198415.3	2692	2	1795	9	1795	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACATTACTAGTGTCTTA	NA	False	NA	-10	True	AATAAA	-19	NA	110579392	110577749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110577700_110579400
ENSMUSG00000043323.18_89	chr5	-	2529	3	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	-4261	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	299	150	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACATTACTAGTGTCTTA	NA	False	NA	-10	True	AATAAA	-19	NA	110585448	110577749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_110580012_110580766_110580968_110585382
ENSMUSG00000043323.18_91	chr5	-	3097	3	FSM	ENSMUSG00000043323.18	ENSMUST00000200293.2	976	3	-10	-2111	-10	-9	multi-exon	FALSE	canonical	3	401	junction_2	98.5	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACATTACTAGTGTCTTA	NA	False	NA	-10	True	AATAAA	-19	NA	110596379	110577749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110580012_110580766_110580968_110595745
ENSMUSG00000043333.13_0	chr4	+	1402	7	FSM	ENSMUSG00000043333.13	ENSMUST00000106204.2	1120	7	8	-290	8	290	multi-exon	FALSE	canonical	3	17	junction_1	3.97562014729219	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATCTGTGCTGGACTCTT	NA	False	NA	NA	False	AATAAA	-12	NA	123703714	123723987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_123703970_123708035_123708185_123711656_123711770_123716549_123716651_123718653_123718715_123720630_123720693_123723326
ENSMUSG00000043336.15_0	chr16	+	3274	2	FSM	ENSMUSG00000043336.15	ENSMUST00000159414.2	3253	2	-30	9	-30	-9	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATTGCTTGCTGAATTT	NA	False	NA	NA	False	AGTAAA	-15	NA	57369574	57393158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_57369703_57390012
ENSMUSG00000043342.10_0	chr2	+	1887	2	FSM	ENSMUSG00000043342.10	ENSMUST00000059272.10	2136	2	222	27	222	-27	multi-exon	FALSE	canonical	2	6	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGAGCCCAGCCGCTGG	NA	False	NA	NA	False	AATAAA	-14	NA	74528292	74530525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_74529178_74529523
ENSMUSG00000043346.10_0	chr17	+	1331	1	FSM	ENSMUSG00000043346.10	ENSMUST00000057074.10	747	1	-34	-550	-34	550	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGCTTTTTAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-13	NA	91544204	91545535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_91544200_91545500
ENSMUSG00000043372.13_0	chr11	+	1224	3	FSM	ENSMUSG00000043372.13	ENSMUST00000062530.5	1910	3	0	686	0	-1	multi-exon	FALSE	canonical	3	4	junction_1	11.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGAGTGGCTACAATTG	NA	False	NA	NA	False	ATTAAA	-17	NA	103024170	103030016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_103024284_103024860_103024968_103029012
ENSMUSG00000043372.13_1	chr11	+	1893	3	FSM	ENSMUSG00000043372.13	ENSMUST00000107037.8	1221	3	35	-707	4	22	multi-exon	FALSE	canonical	3	13	junction_1	7	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGGTTAGTGGTGGCA	NA	False	NA	12	True	AATAAA	-19	NA	103024174	103030724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_103024249_103024860_103024968_103029012
ENSMUSG00000043372.13_2	chr11	+	2524	2	FSM	ENSMUSG00000043372.13	ENSMUST00000130341.2	370	2	-535	-1619	-9	22	multi-exon	FALSE	canonical	3	27	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGGTTAGTGGTGGCA	NA	False	NA	12	True	AATAAA	-19	NA	103024155	103030724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_103024968_103029012
ENSMUSG00000043372.13_3	chr11	+	1644	1	Genic_Genomic	ENSMUSG00000043372.13	novel	NA	NA	NA	NA	4389	21	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAAAGGTTAGTGGTGGC	522	False	NA	11	True	AATAAA	-18	NA	103029079	103030723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_103029100_103030700
ENSMUSG00000043384.16_14	chrX	+	5235	6	FSM	ENSMUSG00000043384.16	ENSMUST00000149595.8	837	6	-14	-4384	-14	4384	multi-exon	FALSE	canonical	3	40	junction_5	28.5629130167075	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAACAGATTGAGTGC	NA	False	NA	NA	False	ATTAAA	-9	NA	134643467	134667123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134649404_134649532_134652693_134652767_134662477
ENSMUSG00000043384.16_3	chrX	+	5188	5	NIC	ENSMUSG00000043384.16	novel	837	6	NA	NA	-22	4381	combination_of_known_junctions	TRUE	canonical	3	29	junction_1	13.3299474867683	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCATAAAAAACAGATTGAG	NA	False	NA	NA	False	ATTAAA	-6	NA	134643459	134667120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134643728_134645247_134645325_134649404_134649532_134652693_134652767_134662477
ENSMUSG00000043384.16_30	chrX	+	5308	7	ISM	ENSMUSG00000043384.16	ENSMUST00000113144.8	5843	11	53411	10	-1444	-2	3prime_fragment	FALSE	canonical	0	0	junction_1	59.1326193117358	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGAAATTGCCCCTTC	9794	False	NA	8	True	AATAAA	-15	NA	134696892	134704213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_134697086_134697697_134697787_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
ENSMUSG00000043384.16_34	chrX	+	5224	6	NNC	ENSMUSG00000043384.16	novel	5843	11	NA	NA	-1443	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	60.7302231183124	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGCAGAAATTGCCC	9795	False	NA	4	True	AATAAA	-11	NA	134696893	134704209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_134697096_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
ENSMUSG00000043384.16_36	chrX	+	5215	6	NIC	ENSMUSG00000043384.16	novel	5843	11	NA	NA	-1444	-6	combination_of_known_splicesites	TRUE	canonical	0	0	junction_1	60.7302231183124	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGCAGAAATTGCCC	9794	False	NA	4	True	AATAAA	-11	NA	134696892	134704209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134697086_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
ENSMUSG00000043384.16_4	chrX	+	2811	4	NIC	ENSMUSG00000072969.3	novel	2779	4	NA	NA	-11	-8	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	31.6789449880446	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACACAATGAAAACATTGT	NA	False	NA	NA	False	AATAAA	-11	NA	134643470	134648063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134643728_134644190_134644272_134645247_134645325_134645667
ENSMUSG00000043384.16_56	chrX	+	2983	1	ISM	ENSMUSG00000043384.16	ENSMUST00000113144.8	5843	11	57749	10	2894	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGAAATTGCCCCTTC	NA	False	NA	8	True	AATAAA	-15	NA	134701230	134704213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_134701200_134704200
ENSMUSG00000043388.9_0	chr5	-	2534	7	ISM	ENSMUSG00000043388.9	ENSMUST00000061446.8	2805	8	6210	1	6210	-1	3prime_fragment	TRUE	canonical	2	6	junction_6	4.2687494916219	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGTGTGGCAAGAATAT	NA	False	NA	-16	True	AATAAA	-16	NA	144692249	144672725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_144674303_144674613_144674727_144680405_144680609_144685466_144685552_144687625_144687793_144689097_144689258_144692020
ENSMUSG00000043388.9_1	chr5	-	2757	8	FSM	ENSMUSG00000043388.9	ENSMUST00000061446.8	2805	8	41	7	41	-7	multi-exon	FALSE	canonical	2	3	junction_7	5.20204041600946	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACACTCTGTGTGGCAA	NA	False	NA	-22	True	AATAAA	-10	NA	144698418	144672731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_144674303_144674613_144674727_144680405_144680609_144685466_144685552_144687625_144687793_144689097_144689258_144692020_144692327_144698266
ENSMUSG00000043388.9_2	chr5	-	2488	6	ISM	ENSMUSG00000043388.9	ENSMUST00000061446.8	2805	8	9017	3	9017	-3	3prime_fragment	FALSE	canonical	2	9	junction_3	3.3466401061363	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTCTGTGTGGCAAGAAT	NA	False	NA	-18	True	AATAAA	-14	NA	144689442	144672727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_144674303_144674613_144674727_144680405_144680609_144685466_144685552_144687625_144687793_144689097
ENSMUSG00000043391.11_0	chr16	-	5102	2	FSM	ENSMUSG00000043391.11	ENSMUST00000053336.8	5164	2	57	5	21	-5	multi-exon	FALSE	canonical	3	80	junction_1	0	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACAAGACTGCCGTTGG	NA	False	NA	NA	False	AATAAA	-19	NA	21513358	21467799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_21472509_21512965
ENSMUSG00000043391.11_1	chr16	-	3167	1	ISM	ENSMUSG00000043391.11	ENSMUST00000053336.8	5164	2	42449	5	41015	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACAAGACTGCCGTTGG	NA	False	NA	NA	False	AATAAA	-19	NA	21470966	21467799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_21467800_21471000
ENSMUSG00000043391.11_7	chr16	-	1150	2	FSM	ENSMUSG00000043391.11	ENSMUST00000231592.2	1135	2	-18	3	-18	0	multi-exon	FALSE	canonical	3	24	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCAGGGTCTCCTGTTT	NA	False	NA	0	True	AATAAA	-27	NA	21513397	21495474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_21496193_21512965
ENSMUSG00000043391.11_9	chr16	-	1708	2	NIC	ENSMUSG00000043391.11	novel	1695	3	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCAGGGTCTCCTGTTT	NA	False	NA	0	True	AATAAA	-27	NA	21513403	21495474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_21496745_21512965
ENSMUSG00000043398.6_0	chr12	-	3094	1	FSM	ENSMUSG00000043398.6	ENSMUST00000050649.6	3150	1	52	4	52	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAGCAAAGATGTTTTGTT	NA	False	NA	-9	True	AATACA	-15	NA	72117847	72114753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_72114800_72117800
ENSMUSG00000043410.17_4	chr5	-	2109	5	NIC	ENSMUSG00000043410.17	novel	5018	40	NA	NA	16	-13807	combination_of_known_junctions	FALSE	canonical	3	5	junction_2	3.96074487943871	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGTTGAGTCTGATTAT	NA	False	NA	NA	False	NA	NA	NA	107074108	107063743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_107065494_107066242_107066356_107070678_107070777_107072696_107072799_107074062
ENSMUSG00000043410.17_5	chr5	-	2249	6	NIC	ENSMUSG00000043410.17	novel	1440	10	NA	NA	-4	-13801	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	4.22374241638858	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTCTGATTATGTTACT	NA	False	NA	NA	False	NA	NA	NA	107074128	107063737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_107065494_107066242_107066356_107068828_107068943_107070678_107070777_107072696_107072799_107074062
ENSMUSG00000043411.16_13	chr4	+	3521	28	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	-9	8	combination_of_known_junctions	FALSE	canonical	3	237	junction_13	327.669427582573	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGACGTGTTTCAGATT	582	False	NA	16	True	AATAAA	-28	NA	137321529	137383650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ENSMUSG00000043411.16_14	chr4	+	3467	27	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	-10	10	combination_of_known_junctions	FALSE	canonical	3	584	junction_9	231.427832630339	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACGTGTTTCAGATTTT	581	False	NA	18	True	AATAAA	-30	NA	137321528	137383652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ENSMUSG00000043411.16_15	chr4	+	3470	27	NIC	ENSMUSG00000043411.16	novel	5741	27	NA	NA	-10	10	combination_of_known_junctions	FALSE	canonical	3	659	junction_9	223.123509724359	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACGTGTTTCAGATTTT	581	False	NA	18	True	AATAAA	-30	NA	137321528	137383652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ENSMUSG00000043411.16_16	chr4	+	3524	28	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	-10	10	combination_of_known_junctions	FALSE	canonical	3	555	junction_19	264.570952206992	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACGTGTTTCAGATTTT	581	False	NA	18	True	AATAAA	-30	NA	137321528	137383652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ENSMUSG00000043411.16_17	chr4	+	3521	28	FSM	ENSMUSG00000043411.16	ENSMUST00000055131.13	5722	28	11	2190	-10	10	multi-exon	FALSE	canonical	3	555	junction_19	271.050863574936	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACGTGTTTCAGATTTT	581	False	NA	18	True	AATAAA	-30	NA	137321528	137383652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ENSMUSG00000043411.16_18	chr4	+	3472	27	FSM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	79	2190	-9	10	multi-exon	FALSE	canonical	3	237	junction_13	294.548307788895	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACGTGTTTCAGATTTT	582	False	NA	18	True	AATAAA	-30	NA	137321529	137383652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ENSMUSG00000043411.16_21	chr4	+	3526	28	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	-10	9	combination_of_known_junctions	FALSE	canonical	3	237	junction_13	322.560439780494	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGACGTGTTTCAGATTT	581	False	NA	17	True	AATAAA	-29	NA	137321528	137383651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ENSMUSG00000043411.16_285	chr4	+	2059	1	ISM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	62330	3	-925	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTTTATCCGGAGTGAG	NA	False	NA	14	True	ATTAAA	-24	NA	137383780	137385839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137383800_137385800
ENSMUSG00000043411.16_29	chr4	+	3467	27	NIC	ENSMUSG00000043411.16	novel	5741	27	NA	NA	-7	10	combination_of_known_junctions	FALSE	canonical	3	237	junction_13	300.621053406908	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACGTGTTTCAGATTTT	584	False	NA	18	True	AATAAA	-30	NA	137321531	137383652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ENSMUSG00000043415.6_0	chr2	+	2817	1	FSM	ENSMUSG00000043415.6	ENSMUST00000052168.6	2832	1	13	2	13	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCTTTCTGGGTAGAGTG	2513	False	NA	2	True	AATAAA	-13	NA	19662575	19665392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_19662600_19665400
ENSMUSG00000043419.12_0	chr11	+	1842	1	NIC	ENSMUSG00000043419.12	novel	2081	2	NA	NA	-12	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATCTGTGAAAGACTGTTA	NA	False	NA	7	True	AATAAA	-16	NA	69231622	69233464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_69231600_69233500
ENSMUSG00000043419.12_1	chr11	+	1740	2	FSM	ENSMUSG00000043419.12	ENSMUST00000129321.2	2081	2	335	6	-13	-6	multi-exon	FALSE	canonical	3	42	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAATCTGTGAAAGACTG	NA	False	NA	4	True	AATAAA	-13	NA	69231621	69233461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69231885_69231984
ENSMUSG00000043421.9_0	chr6	+	926	2	FSM	ENSMUSG00000043421.9	ENSMUST00000054445.9	982	2	52	4	52	-4	multi-exon	FALSE	canonical	3	124	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACTGTTTGTCCTGTTGA	3	True	NA	10	True	AATAAA	-17	NA	29272676	29275441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_29272810_29274648
ENSMUSG00000043424.11_0	chr18	-	1795	1	FSM	ENSMUSG00000043424.11	ENSMUST00000057110.11	2379	1	-29	613	-29	-613	mono-exon	FALSE	NA	NA	NA	NA	NA	871	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATTTTGTGTTATAT	NA	False	NA	NA	False	AATAAA	-16	NA	43610890	43609095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_43609100_43610900
ENSMUSG00000043432.8_0	chr7	-	1611	1	FSM	ENSMUSG00000043432.8	ENSMUST00000058358.8	2460	1	577	272	577	-272	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGAAACAGGTTCTCGC	NA	False	NA	NA	False	GATAAA	-8	NA	4152796	4151185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4151200_4152800
ENSMUSG00000043439.6_0	chr11	-	2314	1	FSM	ENSMUSG00000043439.6	ENSMUST00000052281.6	2314	1	-4	4	-4	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1799	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGTCTTTCGAGGTCC	4937	False	NA	-17	True	AATAAA	-17	NA	97520532	97518218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97518200_97520500
ENSMUSG00000043445.8_0	chr17	+	1061	2	FSM	ENSMUSG00000043445.8	ENSMUST00000053024.8	2627	2	47	1519	4	-1271	multi-exon	FALSE	canonical	3	1130	junction_1	0	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAGAAAAAGAA	NA	False	NA	-15	True	NA	NA	NA	24689412	24690565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24690124_24690215
ENSMUSG00000043445.8_1	chr17	+	1864	1	FSM	ENSMUSG00000043445.8	ENSMUST00000234216.2	2428	1	5	559	5	-559	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGGATCTTACGCGTGT	NA	False	NA	NA	False	NA	NA	NA	24689413	24691277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24689400_24691300
ENSMUSG00000043453.6_0	chrX	-	1727	4	FSM	ENSMUSG00000043453.6	ENSMUST00000088481.5	1821	4	6	88	6	-88	multi-exon	FALSE	canonical	1	1	junction_3	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATTGTTAATAATTGCC	NA	False	NA	NA	False	AATAAA	-25	NA	71430458	71425563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_71427050_71427946_71428036_71428780_71428874_71430399
ENSMUSG00000043467.20_0	chr1	-	3125	1	ISM	ENSMUSG00000043467.20	ENSMUST00000162226.9	18814	5	28799	4	28209	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTGAATCTCTGTCTT	9028	False	NA	-8	True	AATAAA	-13	NA	160833620	160830495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_160830500_160833600
ENSMUSG00000043467.20_5	chr1	-	2062	5	FSM	ENSMUSG00000043467.20	ENSMUST00000159250.9	2473	5	30	381	-2	-217	multi-exon	FALSE	canonical	2	3	junction_4	2.06155281280883	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGATCAATGACTCATT	NA	False	NA	NA	False	AAAAAG	-13	NA	160862388	160847209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_160847977_160857211_160857312_160859374_160860332_160861657_160861855_160862347
ENSMUSG00000043467.20_7	chr1	-	4118	4	NIC	ENSMUSG00000043467.20	novel	2473	5	NA	NA	1	-221	intron_retention	FALSE	canonical	2	3	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAACTGATCAATGACT	NA	False	NA	NA	False	AAAAAG	-9	NA	160862385	160847213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_160847977_160857211_160860332_160861657_160861855_160862347
ENSMUSG00000043483.5_0	chr12	-	737	1	FSM	ENSMUSG00000043483.5	ENSMUST00000052882.5	636	1	23	-124	23	124	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATGGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	96889809	96889072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_96889100_96889800
ENSMUSG00000043487.5_0	chr12	+	3277	3	FSM	ENSMUSG00000043487.5	ENSMUST00000056822.4	3388	3	115	-4	-63	4	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTATTGCTGCTGTTGTTG	NA	False	NA	NA	False	AATAAA	-21	NA	84147542	84158127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84148203_84153216_84153420_84155713
ENSMUSG00000043496.8_0	chr6	-	3438	1	FSM	ENSMUSG00000043496.8	ENSMUST00000127748.5	5363	1	938	987	938	-987	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATTCCAATAGCCAGTA	NA	False	NA	NA	False	NA	NA	NA	53796877	53793439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_53793400_53796900
ENSMUSG00000043510.13_0	chr5	-	769	6	NIC	ENSMUSG00000043510.13	novel	804	6	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	141.291754890369	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGCTTCTGCTAATTGG	NA	False	NA	-7	True	AATAAA	-14	NA	110987613	110976945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_110977078_110978801_110978850_110982520_110982666_110983840_110983936_110984172_110984270_110987361
ENSMUSG00000043510.13_1	chr5	-	765	6	FSM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	29	10	29	0	multi-exon	FALSE	canonical	3	311	junction_3	42.8691030930203	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGCTTCTGCTAATTGG	NA	False	NA	-7	True	AATAAA	-14	NA	110987614	110976945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110977078_110978801_110978850_110982520_110982666_110983845_110983936_110984172_110984270_110987361
ENSMUSG00000043510.13_6	chr5	-	560	3	ISM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	29	6790	29	-6779	5prime_fragment	FALSE	canonical	3	372	junction_2	33.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATAATCAGTGTTCTTT	NA	False	NA	NA	False	TTTAAA	-10	NA	110987614	110983725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110983936_110984172_110984270_110987361
ENSMUSG00000043535.14_2	chr2	+	10764	26	FSM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	182	24	182	-24	multi-exon	FALSE	canonical	3	142	junction_8	57.9545477076648	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAACAAACAAGAAA	NA	False	NA	NA	False	AGTAAA	-45	NA	29015185	29072459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29015562_29015863_29015976_29016885_29017076_29020191_29020403_29023933_29024044_29029231_29029452_29030280_29030401_29033901_29034074_29034189_29034278_29034614_29038734_29040019_29040120_29043949_29044109_29046999_29047233_29048109_29048278_29048852_29049010_29051483_29051586_29051761_29051878_29052989_29053062_29054413_29054564_29056279_29056388_29061174_29061363_29062327_29062421_29063568_29063734_29066888_29066988_29067526_29067615_29069411
ENSMUSG00000043535.14_29	chr2	+	6532	17	ISM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	22244	24	-9980	-24	3prime_fragment	FALSE	canonical	3	223	junction_2	22.7472525813558	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAACAAACAAGAAA	NA	False	NA	NA	False	AGTAAA	-45	NA	29037247	29072459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_29038734_29040019_29040120_29043949_29044109_29046999_29047233_29048109_29048278_29048852_29049010_29051483_29051586_29051761_29051878_29052989_29053062_29054413_29054564_29056279_29056388_29061174_29061363_29062327_29062421_29063568_29063734_29066888_29066988_29067526_29067615_29069411
ENSMUSG00000043535.14_30	chr2	+	6984	18	NIC	ENSMUSG00000043535.14	novel	10970	26	NA	NA	-10253	-10	combination_of_known_junctions	FALSE	canonical	3	32	junction_14	81.0140745600208	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACTGGCCTGGGTTA	NA	False	NA	NA	False	AATAAA	-8	NA	29036974	29072473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29038734_29040019_29040120_29043949_29044109_29046999_29047233_29048109_29048278_29048852_29049010_29051483_29051586_29051761_29051878_29052989_29053062_29054413_29054564_29056279_29056388_29061174_29061363_29062327_29062421_29063568_29063734_29064330_29064496_29066888_29066988_29067526_29067615_29069411
ENSMUSG00000043535.14_44	chr2	+	4190	11	ISM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	36519	24	-2947	-24	3prime_fragment	FALSE	canonical	3	270	junction_7	13.7171425595858	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAACAAACAAGAAA	NA	False	NA	NA	False	AGTAAA	-45	NA	29051522	29072459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_29051586_29051761_29051878_29052989_29053062_29054413_29054564_29056279_29056388_29061174_29061363_29062327_29062421_29063568_29063734_29066888_29066988_29067526_29067615_29069411
ENSMUSG00000043535.14_55	chr2	+	3325	4	ISM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	48657	7	9191	-7	3prime_fragment	FALSE	canonical	3	293	junction_2	4.02768199119819	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGGCCTGGGTTAGAA	3397	False	NA	NA	False	AATAAA	-11	NA	29063660	29072476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_29063734_29066888_29066988_29067526_29067615_29069411
ENSMUSG00000043535.14_58	chr2	+	3204	3	ISM	ENSMUSG00000043535.14	ENSMUST00000145422.2	1141	9	12454	-2911	12454	-20	3prime_fragment	FALSE	canonical	3	293	junction_1	0.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAACAAGAAAACTG	838	False	NA	NA	False	NA	NA	NA	29066923	29072463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_29066988_29067526_29067615_29069411
ENSMUSG00000043535.14_6	chr2	+	10639	25	NIC	ENSMUSG00000043535.14	novel	10970	26	NA	NA	193	-26	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	71.5650442293971	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAATAAAAACAAACAAGA	NA	False	NA	NA	False	AGTAAA	-43	NA	29015196	29072457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29015562_29016885_29017076_29020191_29020403_29023933_29024044_29029231_29029452_29030280_29030401_29033901_29034074_29034189_29034278_29034614_29038734_29040019_29040120_29043949_29044109_29046999_29047233_29048109_29048278_29048852_29049010_29051483_29051586_29051761_29051878_29052989_29053062_29054413_29054564_29056279_29056388_29061174_29061363_29062327_29062421_29063568_29063734_29066888_29066988_29067526_29067615_29069411
ENSMUSG00000043535.14_60	chr2	+	2147	1	ISM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	55309	24	15843	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAACAAACAAGAAA	4227	False	NA	NA	False	AGTAAA	-45	NA	29070312	29072459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_29070300_29072500
ENSMUSG00000043542.13_0	chr3	+	3123	8	NIC	ENSMUSG00000043542.13	novel	3292	9	NA	NA	-14	-83	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	66.9154202660923	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATAAACTGCTGCTTG	NA	False	NA	-73	True	AATAAA	-6	NA	7568528	7618813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7604135_7604244_7616442
ENSMUSG00000043542.13_1	chr3	+	3217	9	FSM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	-8	83	-8	-83	multi-exon	FALSE	canonical	3	121	junction_7	36.9256008752735	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATAAACTGCTGCTTG	NA	False	NA	-73	True	AATAAA	-6	NA	7568534	7618813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7604135_7604244_7616442
ENSMUSG00000043542.13_18	chr3	+	2155	1	ISM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	48123	76	12746	-76	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGCTGCTTGTTATGTT	667	False	NA	-66	True	AATAAA	-13	NA	7616665	7618820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_7616700_7618800
ENSMUSG00000043556.11_0	chr15	-	3855	2	ISM	ENSMUSG00000043556.11	ENSMUST00000059204.11	4632	4	342645	2	342583	-2	3prime_fragment	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGACTCAGTTCCATTT	NA	False	NA	NA	False	AATAAA	-14	NA	26553021	26540546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_26543907_26552526
ENSMUSG00000043556.11_1	chr15	-	4632	4	NNC	ENSMUSG00000043556.11	novel	4632	4	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1.88561808316413	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGACTCAGTTCCATTT	287	False	NA	NA	False	AATAAA	-14	NA	26895671	26540546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_26543907_26552526_26553141_26789603_26789689_26895098
ENSMUSG00000043557.17_0	chr17	-	3998	17	FSM	ENSMUSG00000043557.17	ENSMUST00000171691.9	8425	17	319	4108	319	-1	multi-exon	FALSE	canonical	0	0	junction_8	2.81666358481094	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGCCAGCACCTTCTTT	NA	False	NA	-3	True	ATTAAA	-17	NA	30107363	30051030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_30051374_30051886_30051996_30052195_30052327_30056965_30057101_30057410_30057564_30058522_30058547_30058778_30058957_30059770_30059923_30061092_30061381_30061818_30062116_30065294_30065625_30068130_30068401_30068613_30068747_30069465_30069663_30071415_30071591_30076563_30076704_30106420
ENSMUSG00000043572.8_0	chr4	+	2193	2	FSM	ENSMUSG00000043572.8	ENSMUST00000058905.8	2191	2	-4	2	-1	0	multi-exon	FALSE	canonical	3	40	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGTGTGTGTGTGTGTG	NA	False	NA	3	True	AATAAA	-18	NA	106508298	106512477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_106508329_106510314
ENSMUSG00000043572.8_1	chr4	+	2201	2	FSM	ENSMUSG00000043572.8	ENSMUST00000106782.2	502	2	42	-1741	5	0	multi-exon	FALSE	canonical	3	39	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGTGTGTGTGTGTGTG	NA	False	NA	3	True	AATAAA	-18	NA	106508307	106512477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_106508346_106510314
ENSMUSG00000043572.8_2	chr4	+	3043	2	FSM	ENSMUSG00000043572.8	ENSMUST00000106781.2	3046	2	3	0	-2	0	multi-exon	FALSE	canonical	3	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGTGTGTGTGTGTGTG	NA	False	NA	3	True	AATAAA	-18	NA	106508297	106512477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_106508329_106509465
ENSMUSG00000043572.8_3	chr4	+	4147	1	NIC	ENSMUSG00000043572.8	novel	3046	2	NA	NA	28	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGTGTGTGTGTGTGTG	NA	False	NA	3	True	AATAAA	-18	NA	106508330	106512477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_106508300_106512500
ENSMUSG00000043572.8_5	chr4	+	3051	2	FSM	ENSMUSG00000043572.8	ENSMUST00000146966.2	644	2	7	-2414	4	0	multi-exon	TRUE	canonical	2	6	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGTGTGTGTGTGTGTG	NA	False	NA	3	True	AATAAA	-18	NA	106508306	106512477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_106508346_106509465
ENSMUSG00000043587.16_0	chr9	-	2907	6	FSM	ENSMUSG00000043587.16	ENSMUST00000078478.8	2908	6	1	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	3.9293765408777	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTACAGCTTACGGTG	NA	False	NA	-2	True	AATAAA	-16	NA	96771481	96705396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_96707676_96710982_96711123_96721138_96721266_96722011_96722171_96738420_96738553_96771411
ENSMUSG00000043592.16_0	chr17	+	2831	9	FSM	ENSMUSG00000043592.16	ENSMUST00000074574.13	2838	9	-2	9	-2	-1	multi-exon	TRUE	canonical	1	5	junction_1	7.66383552798467	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAAAATACTGGTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	48761926	48775705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_48762001_48766566_48767013_48767512_48767814_48769203_48769467_48770389_48770492_48770604_48770673_48771469_48771571_48771943_48772058_48774343
ENSMUSG00000043592.16_11	chr17	+	1326	1	ISM	ENSMUSG00000043592.16	ENSMUST00000074574.13	2838	9	12456	4	4953	2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACTGGTACTTTTGAA	NA	False	NA	NA	False	AATAAA	-22	NA	48774384	48775710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_48774400_48775700
ENSMUSG00000043592.16_7	chr17	+	1802	6	ISM	ENSMUSG00000043592.16	ENSMUST00000074574.13	2838	9	7484	8	1	0	3prime_fragment	FALSE	canonical	3	16	junction_5	4.12795348811006	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAAATACTGGTACTTT	NA	False	NA	NA	False	AATAAA	-18	NA	48769412	48775706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_48769467_48770389_48770492_48770604_48770673_48771469_48771571_48771943_48772058_48774343
ENSMUSG00000043602.6_0	chr11	+	1819	2	FSM	ENSMUSG00000043602.6	ENSMUST00000060444.6	2061	2	236	6	236	-6	multi-exon	FALSE	canonical	3	29	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTAATCCTCCTCTGGCCT	106	False	NA	12	True	ATTAAA	-20	NA	70655270	70663748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70655376_70662034
ENSMUSG00000043602.6_2	chr11	+	959	1	ISM	ENSMUSG00000043602.6	ENSMUST00000060444.6	2061	2	7752	9	7752	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTTTAATCCTCCTCTGG	4940	False	NA	9	True	ATTAAA	-17	NA	70662786	70663745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_70662800_70663700
ENSMUSG00000043614.14_0	chr5	-	1527	4	FSM	ENSMUSG00000043614.14	ENSMUST00000067935.11	1544	4	8	9	8	-6	multi-exon	FALSE	canonical	3	21	junction_3	2.86744175568088	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGGTGATGATGCCCCGC	NA	False	NA	-11	True	NA	NA	NA	135107112	135101762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135102838_135103247_135103331_135105311_135105484_135106915
ENSMUSG00000043614.14_3	chr5	-	1279	1	NIC	ENSMUSG00000043614.14	novel	1544	4	NA	NA	4081	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGTGATGATGCCCCGCCT	NA	False	NA	-9	True	NA	NA	NA	135103039	135101760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_135101800_135103000
ENSMUSG00000043614.14_4	chr5	-	1239	2	FSM	ENSMUSG00000043614.14	ENSMUST00000076203.3	1286	2	49	-2	49	-1	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATGCCCCGCCTCCTCTC	NA	False	NA	-3	True	NA	NA	NA	135107071	135101754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135102838_135106915
ENSMUSG00000043621.14_1	chr4	-	2881	2	FSM	ENSMUSG00000043621.14	ENSMUST00000105811.9	2926	2	47	-2	3	2	multi-exon	FALSE	canonical	2	4	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCTGTGTGAAGGCGTC	7396	False	NA	NA	False	AATAAA	-15	NA	138452529	138445846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_138448690_138452491
ENSMUSG00000043621.14_2	chr4	-	3031	3	NIC	ENSMUSG00000043621.14	novel	2757	3	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGCCTGTGTGAAGGCG	7392	False	NA	NA	False	AATAAA	-13	NA	138452533	138445848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_138448690_138448810_138448959_138452491
ENSMUSG00000043621.14_3	chr4	-	2444	1	NIC	ENSMUSG00000043621.14	novel	2460	4	NA	NA	3877	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCTGTGTGAAGGCGTC	8947	False	NA	NA	False	AATAAA	-15	NA	138448290	138445846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_138445800_138448300
ENSMUSG00000043629.13_0	chr1	-	3637	2	FSM	ENSMUSG00000043629.13	ENSMUST00000050567.11	3641	2	2	2	2	-2	multi-exon	FALSE	canonical	3	220	junction_1	0	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTCTCTCAGTCCTCAT	682	False	NA	-7	True	AATAAA	-12	NA	52992001	52961484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_52964894_52991773
ENSMUSG00000043629.13_1	chr1	-	2208	1	ISM	ENSMUSG00000043629.13	ENSMUST00000050567.11	3641	2	28311	2	28311	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTCTCTCAGTCCTCAT	8347	False	NA	-7	True	AATAAA	-12	NA	52963692	52961484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_52961500_52963700
ENSMUSG00000043629.13_2	chr1	-	3458	2	FSM	ENSMUSG00000043629.13	ENSMUST00000114492.8	3565	2	105	2	105	-2	multi-exon	FALSE	canonical	3	11	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTCTCTCAGTCCTCAT	279	False	NA	-7	True	AATAAA	-12	NA	52992404	52961484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_52964894_52992355
ENSMUSG00000043639.16_0	chr19	+	6584	14	FSM	ENSMUSG00000043639.16	ENSMUST00000164202.9	4892	14	0	-1692	0	-8	multi-exon	FALSE	canonical	1	3	junction_1	4.75805141359757	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTGTGAGTGGCTGTG	4741	False	NA	2	True	AATAAA	-10	NA	53665736	53855503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_53666024_53801678_53802772_53803946_53804009_53805576_53805669_53806353_53806452_53821076_53821221_53823078_53823211_53829409_53829490_53831653_53832276_53838532_53838620_53839607_53840248_53841934_53842067_53847822_53847945_53852510
ENSMUSG00000043639.16_1	chr19	+	6545	13	NIC	ENSMUSG00000043639.16	novel	4892	14	NA	NA	-40	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	5.01386965216377	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGCTGTGTCATGCAG	4701	False	NA	10	True	AATAAA	-18	NA	53665696	53855511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_53666024_53801678_53802772_53803946_53804009_53805576_53805669_53806353_53806452_53821076_53821221_53823078_53823211_53829409_53829490_53831653_53832276_53839607_53840248_53841934_53842067_53847822_53847945_53852510
ENSMUSG00000043639.16_10	chr19	+	2438	1	ISM	ENSMUSG00000043639.16	ENSMUST00000161856.2	4663	7	21431	2	21431	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGGCTGTGTCATGC	153	False	NA	8	True	AATAAA	-16	NA	53853071	53855509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_53853100_53855500
ENSMUSG00000043639.16_12	chr19	+	4261	5	NIC	ENSMUSG00000043639.16	novel	4663	7	NA	NA	253	-16	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	6.67083203206317	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATTTGAAAGCTTGTGAG	NA	False	NA	-6	True	AATAAA	-2	NA	53831893	53855495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_53832276_53839607_53840248_53841934_53842067_53847822_53847945_53852510
ENSMUSG00000043639.16_4	chr19	+	6432	14	NIC	ENSMUSG00000043639.16	novel	4663	7	NA	NA	4	-8	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	4.95303385600161	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTGTGAGTGGCTGTG	9909	False	NA	2	True	AATAAA	-10	NA	53781742	53855503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_53781878_53801678_53802772_53803946_53804009_53805576_53805669_53806353_53806452_53821076_53821221_53823078_53823211_53829409_53829490_53831653_53832276_53838532_53838620_53839607_53840248_53841934_53842067_53847822_53847945_53852510
ENSMUSG00000043639.16_6	chr19	+	4295	6	ISM	ENSMUSG00000043639.16	ENSMUST00000164202.9	4892	14	166223	-1697	319	-3	3prime_fragment	FALSE	canonical	3	12	junction_2	2.13541565040626	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTGGCTGTGTCATG	NA	False	NA	7	True	AATAAA	-15	NA	53831959	53855508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_53832276_53838532_53838620_53839607_53840248_53841934_53842067_53847822_53847945_53852510
ENSMUSG00000043639.16_8	chr19	+	3572	4	ISM	ENSMUSG00000043639.16	ENSMUST00000164202.9	4892	14	174191	-1697	8287	-3	3prime_fragment	FALSE	canonical	3	13	junction_1	2.35702260395516	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTGGCTGTGTCATG	7283	False	NA	7	True	AATAAA	-15	NA	53839927	53855508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_53840248_53841934_53842067_53847822_53847945_53852510
ENSMUSG00000043639.16_9	chr19	+	4163	2	ISM	ENSMUSG00000043639.16	ENSMUST00000161856.2	4663	7	15140	2	15140	-2	3prime_fragment	FALSE	canonical	3	18	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGGCTGTGTCATGC	NA	False	NA	8	True	AATAAA	-16	NA	53846780	53855509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_53847945_53852510
ENSMUSG00000043644.5_0	chr11	+	565	2	FSM	ENSMUSG00000043644.5	ENSMUST00000143813.2	619	2	54	0	54	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGAGCTCAACGTCTAAA	3049	False	NA	NA	False	AATAAA	-19	NA	120239557	120242016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120239689_120241582
ENSMUSG00000043648.8_1	chr11	-	1772	2	FSM	ENSMUSG00000043648.8	ENSMUST00000125307.2	948	2	-22	-802	-19	-4	multi-exon	FALSE	canonical	3	85	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGCTGCTGCATGTCTAC	NA	False	NA	-17	True	AATAAA	-12	NA	59678490	59674726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59676052_59678043
ENSMUSG00000043648.8_2	chr11	-	1772	2	FSM	ENSMUSG00000043648.8	ENSMUST00000051493.8	1753	2	-20	1	-20	-1	multi-exon	FALSE	canonical	0	0	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTGCATGTCTACCTT	NA	False	NA	-14	True	AATAAA	-15	NA	59678491	59674723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59676052_59678047
ENSMUSG00000043668.14_0	chr8	-	3282	7	NIC	ENSMUSG00000043668.14	novel	3356	7	NA	NA	-4	-75	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	2.6718699236469	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATCTGTGGACTGTATT	NA	False	NA	NA	False	AATAAA	-11	NA	91074975	90973742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_90975646_90979279_90979361_90980902_90981131_90984502_90984773_90996856_90997109_91001259_91001323_91074490
ENSMUSG00000043668.14_3	chr8	-	3290	7	FSM	ENSMUSG00000043668.14	ENSMUST00000109621.10	3356	7	-9	75	-9	-75	multi-exon	FALSE	canonical	2	4	junction_1	2.82842712474619	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATCTGTGGACTGTATT	NA	False	NA	NA	False	AATAAA	-11	NA	91074980	90973742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_90975646_90979279_90979361_90980902_90981131_90984502_90984773_90996856_90997112_91001259_91001323_91074490
ENSMUSG00000043671.15_0	chr7	-	1823	1	ISM	ENSMUSG00000043671.15	ENSMUST00000051377.15	8006	19	63789	3678	17427	1882	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATTATTTAAATAGTT	6708	False	NA	NA	False	AATAAA	-11	NA	35390090	35388267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_35388300_35390100
ENSMUSG00000043671.15_1	chr7	-	4276	19	FSM	ENSMUSG00000043671.15	ENSMUST00000051377.15	8006	19	46	3684	-9	1876	multi-exon	FALSE	canonical	3	11	junction_12	3.52591814502721	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATTTAAAAAATTATTTAA	NA	False	NA	NA	False	AATAAA	-5	NA	35453833	35388273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_35390368_35392201_35392361_35394706_35394840_35402913_35402997_35406805_35406863_35407484_35407597_35407959_35408083_35411285_35411445_35411569_35411644_35413550_35413653_35416011_35416144_35420969_35421105_35422131_35422256_35424715_35424862_35426714_35426837_35429110_35429202_35449164_35449299_35452039_35452182_35453679
ENSMUSG00000043671.15_4	chr7	-	3389	18	NIC	ENSMUSG00000043671.15	novel	8006	19	NA	NA	-2	1120	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	5.11933711106696	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAATTAACTTTTCCCT	NA	False	NA	NA	False	ATTAAA	-12	NA	35453826	35389029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_35390368_35392201_35392361_35394706_35394840_35402913_35402997_35406805_35406863_35407484_35407597_35407959_35408083_35411285_35411445_35411569_35411644_35413550_35413653_35416011_35416144_35420969_35421105_35424715_35424862_35426714_35426837_35429110_35429202_35449164_35449299_35452039_35452182_35453679
ENSMUSG00000043671.15_5	chr7	-	2819	8	ISM	ENSMUSG00000043671.15	ENSMUST00000051377.15	8006	19	42542	3678	-3261	1882	3prime_fragment	FALSE	canonical	3	12	junction_2	3.92272291935599	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATTATTTAAATAGTT	NA	False	NA	NA	False	AATAAA	-11	NA	35411337	35388267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_35390368_35392201_35392361_35394706_35394840_35402913_35402997_35406805_35406863_35407484_35407597_35407959_35408083_35411285
ENSMUSG00000043671.15_9	chr7	-	2405	4	ISM	ENSMUSG00000043671.15	ENSMUST00000051377.15	8006	19	50212	4419	3850	1141	3prime_fragment	FALSE	canonical	3	12	junction_2	4.89897948556636	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCTCTTGCCATTTGGAAG	NA	False	NA	NA	False	ATTAAA	-33	NA	35403667	35389008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_35390368_35392201_35392361_35394706_35394840_35402913
ENSMUSG00000043673.12_0	chr12	-	2361	3	FSM	ENSMUSG00000043673.12	ENSMUST00000055673.2	2933	3	30	542	30	-4	multi-exon	FALSE	canonical	3	56	junction_1	7	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGAGACTGCCTTGTTTCT	4037	False	NA	-6	True	AATAAA	-14	NA	11200344	11140744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_11142757_11169759_11169950_11200185
ENSMUSG00000043673.12_1	chr12	-	1223	1	ISM	ENSMUSG00000043673.12	ENSMUST00000055673.2	2933	3	58411	538	58411	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCCTTGTTTCTATGT	8363	False	NA	-2	True	AATAAA	-18	NA	11141963	11140740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_11140700_11142000
ENSMUSG00000043673.12_10	chr12	-	2342	3	NNC	ENSMUSG00000043673.12	novel	2933	3	NA	NA	720	-4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	27	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGAGACTGCCTTGTTTCT	4727	False	NA	-6	True	AATAAA	-14	NA	11199654	11140744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_11142757_11169759_11169950_11199514
ENSMUSG00000043681.6_0	chr14	-	422	3	FSM	ENSMUSG00000043681.6	ENSMUST00000052126.6	408	3	-20	6	-20	-6	multi-exon	FALSE	canonical	3	2248	junction_2	168.5	274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGTCCTGAGTTTACC	NA	False	NA	-12	True	AATAAA	-15	NA	34077410	34073843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_34074035_34075654_34075718_34077242
ENSMUSG00000043683.5_0	chr17	+	3297	1	FSM	ENSMUSG00000043683.5	ENSMUST00000060253.5	6801	1	13	3491	13	-3491	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGATGTCTGCCTAGCTGT	NA	False	NA	3	True	ATTAAA	-13	NA	56563822	56567119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56563800_56567100
ENSMUSG00000043687.17_0	chr8	-	740	4	FSM	ENSMUSG00000043687.17	ENSMUST00000123927.9	844	4	103	1	-26	-1	multi-exon	FALSE	canonical	3	48	junction_3	5.09901951359278	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCGGGTCCTGGTTTTT	NA	False	NA	-2	True	AATAAA	-12	NA	121361128	121335341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_121335770_121337932_121338077_121355210_121355257_121361006
ENSMUSG00000043687.17_1	chr8	-	875	4	FSM	ENSMUSG00000043687.17	ENSMUST00000144417.2	508	4	-35	-332	-35	-1	multi-exon	FALSE	canonical	0	0	junction_3	27.6043474836845	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCGGGTCCTGGTTTTT	NA	False	NA	-2	True	AATAAA	-12	NA	121361137	121335341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_121335770_121337932_121338077_121355210_121355257_121360880
ENSMUSG00000043702.10_0	chr14	-	2436	3	FSM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	226	5063	226	-5063	multi-exon	FALSE	canonical	3	278	junction_2	18	528	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTATAGCTTCTTCGT	NA	False	NA	-9	True	ATTAAA	-14	NA	26390812	26386175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_26387123_26387532_26387612_26389402
ENSMUSG00000043716.14_0	chr1	-	893	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	260	10	0	1	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	2055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATTGAAATGTGTCGGAG	NA	False	NA	-15	True	AATAAA	-15	NA	16174626	16171528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
ENSMUSG00000043716.14_1	chr1	-	821	6	ISM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	1011	11	576	0	3prime_fragment	FALSE	canonical	3	5309	junction_1	712.412801681722	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16173875	16171529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733
ENSMUSG00000043716.14_5	chr1	-	614	5	ISM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	1391	13	-423	-2	3prime_fragment	FALSE	canonical	3	5309	junction_1	708.503484465673	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAAATTGAAATGTGTCG	NA	False	NA	-18	True	AATAAA	-12	NA	16173495	16171531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391
ENSMUSG00000043733.15_0	chr5	-	5602	16	FSM	ENSMUSG00000043733.15	ENSMUST00000100770.9	5599	16	-12	9	-12	-1	multi-exon	FALSE	canonical	3	69	junction_6	9.90263713473448	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACAGTATTTGTCATTTG	840	False	NA	-9	True	AATAAA	-14	NA	121329472	121268604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624_121281693_121282592_121282748_121287165_121287298_121290274_121290434_121290537_121290618_121292492_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
ENSMUSG00000043733.15_1	chr5	-	5610	16	FSM	ENSMUSG00000043733.15	ENSMUST00000054547.9	5535	16	-76	1	-8	-1	multi-exon	TRUE	non_canonical	0	0	junction_6	23.8687149959011	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACAGTATTTGTCATTTG	844	False	NA	-9	True	AATAAA	-14	NA	121329468	121268604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624_121281693_121282592_121282760_121287165_121287298_121290274_121290434_121290537_121290618_121292492_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
ENSMUSG00000043733.15_2	chr5	-	2406	1	ISM	ENSMUSG00000043733.15	ENSMUST00000100770.9	5599	16	58450	9	10688	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACAGTATTTGTCATTTG	NA	False	NA	-9	True	AATAAA	-14	NA	121271010	121268604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121268600_121271000
ENSMUSG00000043770.11_0	chr4	+	480	1	FSM	ENSMUSG00000043770.11	ENSMUST00000102482.5	297	1	-114	-69	-114	69	mono-exon	FALSE	NA	NA	NA	NA	NA	262	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTCAAAAAAAAAAAAAAA	8390	False	NA	NA	False	ATTAAA	-12	NA	43663928	43664408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43663900_43664400
ENSMUSG00000043789.9_0	chr19	+	183	1	NIC	ENSMUSG00000043789.9	novel	754	5	NA	NA	4705	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAAAAAAAAGTTTGTT	8092	False	NA	NA	False	NA	NA	NA	10616350	10616533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10616400_10616500
ENSMUSG00000043801.8_0	chr17	-	1036	1	FSM	ENSMUSG00000043801.8	ENSMUST00000052440.8	685	1	-73	-278	-73	278	mono-exon	FALSE	NA	NA	NA	NA	NA	236	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	17566475	17565439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_17565400_17566500
ENSMUSG00000043811.6_0	chr16	+	1932	2	FSM	ENSMUSG00000043811.6	ENSMUST00000059589.6	1938	2	3	3	3	-3	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCTGTGGCCTCTTGGGC	NA	False	NA	4	True	AATAAA	-13	NA	17945508	17970269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17945767_17968595
ENSMUSG00000043822.19_10	chr10	-	2380	12	NIC	ENSMUSG00000043822.19	novel	3520	12	NA	NA	32	-63	intron_retention	TRUE	canonical	2	3	junction_2	5.52380273853211	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAACTTTCTGTTCATCT	NA	False	NA	NA	False	NA	NA	NA	80184214	80176737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80177291_80177422_80177495_80177576_80177776_80177892_80178057_80178140_80178855_80179432_80179561_80180666_80180776_80180876_80180938_80181155_80181251_80181346_80181538_80183390_80183460_80184189
ENSMUSG00000043831.13_0	chr7	+	2898	3	FSM	ENSMUSG00000043831.13	ENSMUST00000058771.13	2898	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	19.5	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAACATGATTCTCCCT	NA	False	NA	NA	False	AATAAA	-16	NA	66872355	66878204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_66872378_66873356_66873640_66875611
ENSMUSG00000043831.13_10	chr7	+	2197	1	ISM	ENSMUSG00000043831.13	ENSMUST00000058771.13	2898	3	3652	0	2651	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAACATGATTCTCCCT	NA	False	NA	NA	False	AATAAA	-16	NA	66876007	66878204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_66876000_66878200
ENSMUSG00000043831.13_4	chr7	+	3293	3	FSM	ENSMUSG00000043831.13	ENSMUST00000208998.2	2110	3	6	-1189	6	0	multi-exon	FALSE	canonical	3	29	junction_1	27.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAACATGATTCTCCCT	NA	False	NA	NA	False	AATAAA	-16	NA	66872369	66878204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_66872787_66873356_66873640_66875611
ENSMUSG00000043831.13_9	chr7	+	2878	2	ISM	ENSMUSG00000043831.13	ENSMUST00000058771.13	2898	3	999	0	-2	0	3prime_fragment	FALSE	canonical	3	84	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAACATGATTCTCCCT	NA	False	NA	NA	False	AATAAA	-16	NA	66873354	66878204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_66873640_66875611
ENSMUSG00000043833.7_0	chr5	+	2041	1	FSM	ENSMUSG00000043833.7	ENSMUST00000171190.2	2025	1	-10	-6	-10	6	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTTGGAGTACAGACTT	NA	False	NA	NA	False	TTTAAA	-13	NA	25305970	25308011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_25306000_25308000
ENSMUSG00000043857.17_0	chr11	+	4218	17	NNC	ENSMUSG00000043857.17	novel	4258	18	NA	NA	26	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	8.87764045228235	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGATGAAGAAATTGGTG	1834	False	NA	NA	False	AATAAA	-18	NA	116809714	116877760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_116810370_116814165_116814279_116822448_116822597_116835690_116835807_116836317_116836392_116837297_116837469_116838052_116838218_116839340_116839511_116857532_116857665_116859210_116859345_116864126_116864258_116868500_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
ENSMUSG00000043857.17_13	chr11	+	6827	6	NIC	ENSMUSG00000043857.17	novel	2568	7	NA	NA	-16	-6	intron_retention	FALSE	canonical	3	31	junction_2	3.96988664825584	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGATGAAGAAATTGGTG	NA	False	NA	NA	False	AATAAA	-18	NA	116863882	116877760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
ENSMUSG00000043857.17_15	chr11	+	2681	7	ISM	ENSMUSG00000043857.17	ENSMUST00000103027.10	4258	18	54857	14	647	-6	3prime_fragment	FALSE	canonical	1	4	junction_1	12.0369800568452	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGATGAAGAAATTGGTG	NA	False	NA	NA	False	AATAAA	-18	NA	116864545	116877760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_116865024_116868506_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
ENSMUSG00000043857.17_17	chr11	+	1662	2	ISM	ENSMUSG00000043857.17	ENSMUST00000126757.2	2568	7	11848	6	11848	-6	3prime_fragment	FALSE	canonical	3	41	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGATGAAGAAATTGGTG	7357	False	NA	NA	False	AATAAA	-18	NA	116875746	116877760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_116875958_116876309
ENSMUSG00000043857.17_18	chr11	+	861	1	ISM	ENSMUSG00000043857.17	ENSMUST00000103027.10	4258	18	67216	9	13006	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGAAATTGGTGGGATT	8515	False	NA	NA	False	AATAAA	-23	NA	116876904	116877765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_116876900_116877800
ENSMUSG00000043857.17_19	chr11	+	4233	17	NIC	ENSMUSG00000043857.17	novel	4258	18	NA	NA	-10	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	8.87764045228235	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGATGAAGAAATTGGTG	1798	False	NA	NA	False	AATAAA	-18	NA	116809678	116877760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_116810370_116814165_116814279_116822448_116822597_116835690_116835807_116836317_116836392_116837297_116837469_116838052_116838218_116839340_116839511_116857532_116857665_116859210_116859345_116864126_116864243_116868506_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
ENSMUSG00000043857.17_2	chr11	+	4339	18	NNC	ENSMUSG00000043857.17	novel	4258	18	NA	NA	16	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	10.5302332903307	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATGAAGAAATTGGTGGG	1824	False	NA	NA	False	AATAAA	-20	NA	116809704	116877762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_116810370_116814165_116814279_116822448_116822597_116835690_116835807_116836317_116836392_116837297_116837469_116838052_116838218_116839340_116839511_116857532_116857665_116859210_116859345_116864126_116864258_116865017_116865133_116868506_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
ENSMUSG00000043857.17_29	chr11	+	2582	7	FSM	ENSMUSG00000043857.17	ENSMUST00000126757.2	2568	7	-15	1	-15	-1	multi-exon	FALSE	canonical	3	13	junction_1	8.89600409672168	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGAAATTGGTGGGATT	NA	False	NA	NA	False	AATAAA	-23	NA	116863883	116877765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116864258_116868506_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
ENSMUSG00000043857.17_6	chr11	+	4222	17	NIC	ENSMUSG00000043857.17	novel	4258	18	NA	NA	15	-7	combination_of_known_junctions	FALSE	canonical	3	13	junction_11	6.60462669270565	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGATGATGAAGAAATTGGT	1823	False	NA	NA	False	AATAAA	-17	NA	116809703	116877759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_116810370_116814165_116814279_116822448_116822597_116835690_116835807_116836317_116836392_116837297_116837469_116838052_116838218_116839340_116839511_116857532_116857665_116859210_116859345_116864126_116864258_116868506_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
ENSMUSG00000043866.12_1	chr7	-	753	5	FSM	ENSMUSG00000043866.12	ENSMUST00000141116.2	4281	5	23	3505	4	-2	multi-exon	FALSE	canonical	3	1140	junction_4	81.1861287413065	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCGGGGCTGATCCCTCCC	6462	False	NA	-32	True	AATAAA	-13	NA	105393545	105392104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105392271_105392432_105392548_105392634_105392700_105393036_105393192_105393293
ENSMUSG00000043866.12_2	chr7	-	2663	1	ISM	ENSMUSG00000043866.12	ENSMUST00000141116.2	4281	5	2305	1	1554	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCATCCCCTAAGGACA	8744	False	NA	-13	True	AATAAA	-19	NA	105391263	105388600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_105388600_105391300
ENSMUSG00000043872.15_11	chr4	-	3169	7	NIC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_6	141.739981029427	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATCCTAATGAAGTTTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	126954911	126941385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126954788
ENSMUSG00000043872.15_27	chr4	-	3378	8	NIC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_7	138.51633661848	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATCCTAATGAAGTTTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	126954885	126941385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954703
ENSMUSG00000043872.15_7	chr4	-	3961	7	NIC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	18	-3	intron_retention	FALSE	canonical	3	376	junction_5	28.9333525345558	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGAATCCTAATGAAGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	126954899	126941388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
ENSMUSG00000043872.15_8	chr4	-	3327	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	26	499	-2	0	multi-exon	FALSE	canonical	3	376	junction_6	26.8206438918888	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATCCTAATGAAGTTTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	126954919	126941385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
ENSMUSG00000043872.15_9	chr4	-	1652	1	ISM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	11910	497	8331	2	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCTAATGAAGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-22	NA	126943035	126941383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126941400_126943000
ENSMUSG00000043881.10_0	chr14	+	4549	1	FSM	ENSMUSG00000043881.10	ENSMUST00000061222.9	4526	1	-28	5	-28	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAAAGGCTTCCTGGCT	3181	False	NA	NA	False	AATAAA	-10	NA	79663922	79668471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_79663900_79668500
ENSMUSG00000043885.15_0	chr9	+	5539	11	FSM	ENSMUSG00000043885.15	ENSMUST00000061568.9	6539	11	20	980	20	-980	multi-exon	FALSE	canonical	2	6	junction_1	2.41039415863879	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAAATGCCTATTAAGTT	NA	False	NA	NA	False	AATAAA	-20	NA	15621054	15653677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_15621134_15630928_15631053_15631995_15632087_15633228_15633318_15634809_15634906_15635816_15635902_15638106_15638335_15639996_15640096_15645432_15645603_15648167_15648338_15649369
ENSMUSG00000043885.15_4	chr9	+	3168	1	ISM	ENSMUSG00000043885.15	ENSMUST00000061568.9	6539	11	29474	981	12325	-981	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATAAATGCCTATTAAGT	NA	False	NA	NA	False	AATAAA	-19	NA	15650508	15653676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_15650500_15653700
ENSMUSG00000043885.15_7	chr9	+	5549	11	FSM	ENSMUSG00000043885.15	ENSMUST00000115588.8	1745	11	-2	-3802	-2	-980	multi-exon	FALSE	canonical	0	0	junction_10	3.69323706252388	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAAATGCCTATTAAGTT	NA	False	NA	NA	False	AATAAA	-20	NA	15621031	15653677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_15621134_15630928_15631053_15631995_15632087_15633228_15633318_15634809_15634906_15635816_15635902_15638106_15638335_15639996_15640096_15645432_15645603_15648167_15648325_15649369
ENSMUSG00000043895.7_0	chr9	-	2783	2	FSM	ENSMUSG00000043895.7	ENSMUST00000054197.7	6394	2	15	3596	15	2292	multi-exon	FALSE	canonical	3	250	junction_1	0	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGCTGGTGGTTATGT	8109	False	NA	-6	True	AATAAA	-14	NA	20888062	20877252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20879867_20887893
ENSMUSG00000043895.7_1	chr9	-	1646	1	ISM	ENSMUSG00000043895.7	ENSMUST00000054197.7	6394	2	9181	3594	6378	2294	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTGGTGGTTATGTGT	9245	False	NA	-4	True	AATAAA	-16	NA	20878896	20877250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20877200_20878900
ENSMUSG00000043909.17_13	chr2	-	6084	27	NIC	ENSMUSG00000043909.17	novel	9621	28	NA	NA	-11	-5	combination_of_known_splicesites	TRUE	canonical	3	10	junction_12	35.4479366538837	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGGGATGTCTTCAT	8098	False	NA	-10	True	AATAAA	-21	NA	121101862	121028736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121038835_121038986_121039561_121039834_121041750_121041904_121046147_121046653_121054185_121054244_121058125_121058330_121059068_121059189_121066053_121067351_121074374_121074578_121077981_121078077_121078644_121078772_121082348_121082516_121084082_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100791_121101004_121101190_121101752
ENSMUSG00000043909.17_16	chr2	-	6184	28	NIC	ENSMUSG00000043909.17	novel	9621	28	NA	NA	13	-5	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	35.2770341128966	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGGGATGTCTTCAT	8085	False	NA	-10	True	AATAAA	-21	NA	121101875	121028736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033234_121034813_121035030_121035400_121035593_121038179_121038611_121038835_121038986_121039561_121039834_121041750_121041904_121046147_121046653_121051638_121051732_121054185_121054244_121058125_121058330_121059068_121059189_121066053_121067351_121074374_121074578_121077981_121078077_121078644_121078772_121082348_121082516_121084082_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100791_121101004_121101190_121101752
ENSMUSG00000043909.17_17	chr2	-	6064	27	NIC	ENSMUSG00000043909.17	novel	9621	28	NA	NA	-18	-5	combination_of_known_junctions	FALSE	canonical	3	5	junction_15	36.7544426328905	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGGGATGTCTTCAT	8091	False	NA	-10	True	AATAAA	-21	NA	121101869	121028736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121038835_121038986_121039561_121039834_121041750_121041904_121046147_121046653_121051638_121051732_121054185_121054244_121058125_121058330_121066053_121067351_121074374_121074578_121077981_121078077_121078644_121078772_121082348_121082516_121084082_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100791_121101004_121101190_121101752
ENSMUSG00000043909.17_3	chr2	-	6186	28	FSM	ENSMUSG00000043909.17	ENSMUST00000110648.8	9621	28	17	3418	17	-5	multi-exon	FALSE	canonical	3	115	junction_12	23.0142199734784	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGGGATGTCTTCAT	8089	False	NA	-10	True	AATAAA	-21	NA	121101871	121028736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121038835_121038986_121039561_121039834_121041750_121041904_121046147_121046653_121051638_121051732_121054185_121054244_121058125_121058330_121059068_121059189_121066053_121067351_121074374_121074578_121077981_121078077_121078644_121078772_121082348_121082516_121084082_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100791_121101004_121101190_121101752
ENSMUSG00000043909.17_4	chr2	-	4069	17	ISM	ENSMUSG00000043909.17	ENSMUST00000110648.8	9621	28	35171	3416	-230	-3	3prime_fragment	FALSE	canonical	3	115	junction_12	25.0745762676062	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGGGATGTCTTCATCT	NA	False	NA	-8	True	AATAAA	-23	NA	121066717	121028734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121038835_121038986_121039561_121039834_121041750_121041904_121046147_121046653_121051638_121051732_121054185_121054244_121058125_121058330_121059068_121059189_121066053
ENSMUSG00000043909.17_5	chr2	-	6039	27	FSM	ENSMUSG00000043909.17	ENSMUST00000110647.8	9405	27	-52	3418	14	-5	multi-exon	FALSE	canonical	3	11	junction_8	35.6224656526131	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGGGATGTCTTCAT	8086	False	NA	-10	True	AATAAA	-21	NA	121101874	121028736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121039561_121039834_121041750_121041904_121046147_121046653_121051638_121051732_121054185_121054244_121058125_121058330_121059068_121059189_121066053_121067351_121074374_121074578_121077981_121078077_121078644_121078772_121082348_121082516_121084082_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100791_121101004_121101190_121101752
ENSMUSG00000043923.9_0	chr9	-	993	10	ISM	ENSMUSG00000043923.9	ENSMUST00000053286.9	1725	11	803	1	220	-1	3prime_fragment	FALSE	canonical	3	28	junction_6	11.8925228091197	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCTGATTGAACCTGTAA	9213	False	NA	-1	True	AATAAA	-20	NA	44329063	44321456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324767_44324831_44324903_44324971_44328407_44328507_44328929
ENSMUSG00000043923.9_13	chr9	-	1167	11	FSM	ENSMUSG00000043923.9	ENSMUST00000053286.9	1725	11	551	7	3	-3	multi-exon	FALSE	canonical	3	28	junction_6	11.2853887837327	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTACAGCTGATTGAAC	8961	False	NA	-7	True	AATAAA	-14	NA	44329315	44321462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324767_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ENSMUSG00000043923.9_2	chr9	-	3422	8	NIC	ENSMUSG00000043923.9	novel	1080	11	NA	NA	1	-1	intron_retention	FALSE	canonical	3	36	junction_3	10.6732547682016	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCTGATTGAACCTGTAA	8959	False	NA	-1	True	AATAAA	-20	NA	44329317	44321456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44321662_44321744_44321878_44321987_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ENSMUSG00000043923.9_20	chr9	-	1183	11	NIC	ENSMUSG00000043923.9	novel	1725	11	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	9.58331884056875	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTACAGCTGATTGAAC	8973	False	NA	-7	True	AATAAA	-14	NA	44329303	44321462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ENSMUSG00000043923.9_23	chr9	-	3662	7	NIC	ENSMUSG00000043923.9	novel	1725	11	NA	NA	-4	-3	intron_retention	FALSE	canonical	3	40	junction_4	8.64902049688608	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTACAGCTGATTGAAC	8954	False	NA	-7	True	AATAAA	-14	NA	44329322	44321462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44321662_44321744_44321878_44321987_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ENSMUSG00000043923.9_4	chr9	-	2979	9	NIC	ENSMUSG00000043923.9	novel	1080	11	NA	NA	-6	-1	intron_retention	FALSE	canonical	3	36	junction_4	10.7092249953019	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCTGATTGAACCTGTAA	8969	False	NA	-1	True	AATAAA	-20	NA	44329307	44321456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44321662_44321744_44321878_44321987_44323781_44324213_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ENSMUSG00000043923.9_5	chr9	-	1299	10	NIC	ENSMUSG00000043923.9	novel	1725	11	NA	NA	-5	-1	intron_retention	FALSE	canonical	3	36	junction_6	10.0860495270313	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCTGATTGAACCTGTAA	8935	False	NA	-1	True	AATAAA	-20	NA	44329341	44321456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929
ENSMUSG00000043924.17_0	chr4	-	1804	5	NIC	ENSMUSG00000043924.17	novel	2000	6	NA	NA	-9	-2	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	5.8309518948453	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCTTTTTTGTCACCTT	5720	False	NA	-3	True	ATTAAA	-14	NA	135125510	135096889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_135098022_135099187_135099273_135104301_135104385_135107962_135108150_135125193
ENSMUSG00000043924.17_8	chr4	-	1787	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105859.8	1801	5	11	3	11	-2	multi-exon	FALSE	canonical	3	9	junction_3	5.49431524395898	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCTTTTTTGTCACCTT	5740	False	NA	-3	True	ATTAAA	-14	NA	135125490	135096889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135098022_135099187_135099273_135104301_135104388_135107962_135108150_135125193
ENSMUSG00000043929.17_0	chrX	+	1940	4	FSM	ENSMUSG00000043929.17	ENSMUST00000153900.8	627	4	10	-1323	10	0	multi-exon	FALSE	canonical	3	7	junction_1	20.8859335970941	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCAGCAGCCTGGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	93278219	93297669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_93278260_93278826_93279027_93285550_93285602_93296020
ENSMUSG00000043929.17_1	chrX	+	1141	5	NIC	ENSMUSG00000043929.17	novel	627	4	NA	NA	-7	-8	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	18.9868375460475	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTAAATAATACTCAGCAG	NA	False	NA	NA	False	AATAAA	-12	NA	93278197	93297661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_93278260_93278826_93279027_93285550_93285602_93296020_93296733_93297545
ENSMUSG00000043929.17_15	chrX	+	5796	2	ISM	ENSMUSG00000043929.17	ENSMUST00000113915.2	6241	4	16884	5	16884	-5	3prime_fragment	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACTATGTCTTTAACTG	9790	False	NA	NA	False	AATAAA	-15	NA	93296300	93321325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_93296733_93315961
ENSMUSG00000043929.17_17	chrX	+	3175	1	FSM	ENSMUSG00000099072.3	ENSMUST00000184567.3	64	1	-28	-3083	-28	3083	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTATGTCTTTAACTGA	NA	False	NA	NA	False	AATAAA	-16	NA	93318151	93321326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_93318200_93321300
ENSMUSG00000043929.17_2	chrX	+	1256	5	FSM	ENSMUSG00000043929.17	ENSMUST00000113911.9	1227	5	-37	8	23	-4	multi-exon	FALSE	canonical	3	23	junction_4	15.1224171348366	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATACTCAGCAGCCTG	NA	False	NA	NA	False	AATAAA	-16	NA	93278558	93297665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020_93296733_93297545
ENSMUSG00000043929.17_3	chrX	+	6557	4	FSM	ENSMUSG00000099072.3_ENSMUSG00000043929.17	ENSMUST00000170594.8	2027	4	-319	-4211	2	-4	multi-exon	FALSE	canonical	3	16	junction_3	16.6799946709291	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTATGTCTTTAACTGA	NA	False	NA	NA	False	AATAAA	-16	NA	93278597	93321326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_93279027_93285550_93285602_93296020_93296733_93315961
ENSMUSG00000043929.17_4	chrX	+	6492	5	Fusion	ENSMUSG00000099072.3_ENSMUSG00000043929.17	novel	1227	5	NA	NA	-25	-4	multi-exon	FALSE	canonical	3	16	junction_4	17.9652442232217	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTATGTCTTTAACTGA	NA	False	NA	NA	False	AATAAA	-16	NA	93278567	93321326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020_93296733_93315961
ENSMUSG00000043929.17_5	chrX	+	1334	4	NIC	ENSMUSG00000043929.17	novel	1227	5	NA	NA	-17	-4	intron_retention	FALSE	canonical	3	23	junction_3	13.4246870437348	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATACTCAGCAGCCTG	NA	False	NA	NA	False	AATAAA	-16	NA	93278575	93297665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_93279027_93285550_93285602_93296020_93296733_93297545
ENSMUSG00000043929.17_7	chrX	+	2059	4	FSM	ENSMUSG00000043929.17	ENSMUST00000096369.10	3944	4	-17	1902	-17	-1	multi-exon	FALSE	canonical	3	48	junction_2	6.59966329107444	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCAGCCTGGCATGTT	NA	False	NA	NA	False	AATAAA	-23	NA	93278575	93297672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020
ENSMUSG00000043929.17_9	chrX	+	1207	4	FSM	ENSMUSG00000043929.17	ENSMUST00000113908.8	1235	4	19	9	16	-9	multi-exon	FALSE	canonical	2	6	junction_2	24.3447461820136	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTTAAATAATACTCAGCA	NA	False	NA	NA	False	AATAAA	-11	NA	93278551	93297660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_93278732_93278826_93279027_93296020_93296733_93297545
ENSMUSG00000043940.16_1	chr5	-	3811	4	ISM	ENSMUSG00000043940.16	ENSMUST00000173955.2	2713	8	6412	-1975	6412	-6	3prime_fragment	FALSE	canonical	3	14	junction_1	9.20144916122817	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATAATTTTAAGTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	101992967	101980827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_101984148_101991882_101992081_101992413_101992526_101992786
ENSMUSG00000043940.16_10	chr5	-	4857	9	ISM	ENSMUSG00000043940.16	ENSMUST00000174598.8	10581	65	129047	-3191	-998	-11	intron_retention	FALSE	canonical	3	14	junction_1	5.88960949469487	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACCACAAAATAATTTTAA	NA	False	NA	NA	False	AATAAA	-11	NA	102000377	101980832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_101984148_101991882_101992081_101992413_101992526_101992786_101993111_101994968_101995066_101996188_101996372_101997134_101997315_101999105_101999265_102000088
ENSMUSG00000043940.16_2	chr5	-	4953	11	ISM	ENSMUSG00000043940.16	ENSMUST00000174598.8	10581	65	126090	-3193	-3955	-9	3prime_fragment	FALSE	canonical	3	14	junction_1	5.34883164812653	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCACAAAATAATTTTAAGT	NA	False	NA	NA	False	AATAAA	-13	NA	102003334	101980830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_101984148_101991882_101992081_101992413_101992526_101992786_101993111_101994968_101995066_101996188_101996372_101997134_101997315_101999105_101999265_102000088_102000244_102000373_102000522_102003254
ENSMUSG00000043940.16_24	chr5	-	4681	15	ISM	ENSMUSG00000043940.16	ENSMUST00000053177.14	14274	67	-10	101337	-10	788	5prime_fragment	FALSE	canonical	3	36	junction_1	9.26150690784613	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATATTTGTACCCTCAAA	NA	False	NA	NA	False	AATAAA	-13	NA	102217797	102082158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_102083940_102085147_102085606_102089305_102089500_102090885_102090988_102091746_102092215_102096673_102096841_102099090_102099278_102100846_102101040_102105249_102105412_102108981_102109092_102116734_102116859_102129244_102129456_102157654_102157754_102189520_102189610_102217461
ENSMUSG00000043940.16_28	chr5	-	2711	13	ISM	ENSMUSG00000043940.16	ENSMUST00000174698.2	3858	16	-14	11869	-14	-6094	5prime_fragment	FALSE	canonical	3	36	junction_8	9.24962461700774	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACACACATACACAACAA	NA	False	NA	NA	False	NA	NA	NA	102217801	102089040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_102089500_102090885_102090988_102091746_102092215_102096673_102096841_102099090_102099278_102100846_102101040_102105249_102105412_102108981_102109092_102116734_102116859_102129244_102129456_102157654_102157754_102189520_102189610_102217461
ENSMUSG00000043940.16_3	chr5	-	4724	8	FSM	ENSMUSG00000043940.16	ENSMUST00000173955.2	2713	8	-36	-1975	-36	-6	multi-exon	FALSE	canonical	3	14	junction_1	6.29544701043734	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATAATTTTAAGTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	101999415	101980827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_101984148_101991882_101992081_101992413_101992526_101992786_101993111_101994968_101995066_101996188_101996372_101997134_101997315_101999105
ENSMUSG00000043940.16_6	chr5	-	2875	1	ISM	ENSMUSG00000043940.16	ENSMUST00000053177.14	14274	67	234085	6	15677	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATAATTTTAAGTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	101983702	101980827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_101980800_101983700
ENSMUSG00000043943.15_0	chr9	-	2810	19	FSM	ENSMUSG00000043943.15	ENSMUST00000166825.8	2799	19	-11	0	-11	0	multi-exon	FALSE	canonical	0	0	junction_2	1.64147630029935	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTTAGCATCAAGAAACA	2047	False	NA	NA	False	AATAAA	-17	NA	18297343	18234315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_18234920_18237471_18237565_18238659_18238742_18241930_18242196_18246223_18246315_18250686_18250779_18258749_18258818_18260145_18260210_18262145_18262229_18262331_18262452_18262705_18262792_18274437_18274537_18275416_18275511_18287718_18287906_18289903_18290030_18291207_18291310_18292090_18292278_18296340_18296453_18297088
ENSMUSG00000043962.17_1	chr4	-	4345	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	517	junction_11	115.160039556887	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAACGGACTGTGTTTG	6788	False	NA	-10	True	AATAAA	-21	NA	126096439	126057881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
ENSMUSG00000043962.17_17	chr4	-	2845	8	ISM	ENSMUSG00000043962.17	ENSMUST00000080919.12	4378	11	24481	7	247	-3	3prime_fragment	FALSE	canonical	3	676	junction_7	73.4141175324012	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAACGGACTGTGTTTG	NA	False	NA	-10	True	AATAAA	-21	NA	126072072	126057881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654
ENSMUSG00000043962.17_32	chr4	-	3824	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	9	-3	combination_of_known_junctions	FALSE	canonical	3	68	junction_7	237.221554913761	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAACGGACTGTGTTTG	6796	False	NA	-10	True	AATAAA	-21	NA	126096431	126057881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126072167_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
ENSMUSG00000043962.17_4	chr4	-	1255	1	ISM	ENSMUSG00000043962.17	ENSMUST00000080919.12	4378	11	37420	4	2136	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACGGACTGTGTTTGTTG	NA	False	NA	-7	True	AATAAA	-24	NA	126059133	126057878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126057900_126059100
ENSMUSG00000043962.17_5	chr4	-	3606	9	ISM	ENSMUSG00000043962.17	ENSMUST00000080919.12	4378	11	22364	9	-249	-5	3prime_fragment	FALSE	canonical	3	676	junction_7	72.7147681011223	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTAAACGGACTGTGTT	NA	False	NA	-12	True	AATAAA	-19	NA	126074189	126057883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704
ENSMUSG00000043962.17_8	chr4	-	4256	11	FSM	ENSMUSG00000043962.17	ENSMUST00000080919.12	4378	11	115	7	2	-3	multi-exon	FALSE	canonical	3	431	junction_10	137.634443363571	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAACGGACTGTGTTTG	6789	False	NA	-10	True	AATAAA	-21	NA	126096438	126057881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126096362
ENSMUSG00000043964.15_0	chr7	+	1819	2	FSM	ENSMUSG00000043964.15	ENSMUST00000061587.13	1996	2	32	145	32	-145	multi-exon	FALSE	canonical	3	68	junction_1	0	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTTCCTATGGCTATGA	NA	False	NA	12	True	AATAAA	-12	NA	127369018	127374177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127369389_127372728
ENSMUSG00000043964.15_2	chr7	+	1963	3	FSM	ENSMUSG00000043964.15	ENSMUST00000121504.2	2141	3	35	143	35	-143	multi-exon	FALSE	canonical	0	0	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCCTATGGCTATGAAT	NA	False	NA	14	True	AATAAA	-14	NA	127369021	127374179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127369389_127369905_127370051_127372728
ENSMUSG00000043987.19_12	chr9	-	3263	12	ISM	ENSMUSG00000043987.19	ENSMUST00000213154.2	6105	32	47432	-1308	-3764	-4	3prime_fragment	FALSE	canonical	3	64	junction_3	8.12505562600157	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGGCAGTCCTGTGAGTG	NA	False	NA	33	True	ATTAAA	-21	NA	45687593	45678247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162
ENSMUSG00000043987.19_13	chr9	-	2179	6	ISM	ENSMUSG00000043987.19	ENSMUST00000216284.2	4819	26	30876	-9	151	-3	3prime_fragment	FALSE	canonical	3	64	junction_3	10.6957935656967	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCAGTCCTGTGAGTGT	NA	False	NA	34	True	ATTAAA	-22	NA	45683678	45678246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579
ENSMUSG00000043987.19_17	chr9	-	3542	17	ISM	ENSMUSG00000043987.19	ENSMUST00000213154.2	6105	32	44196	-1307	-7000	-5	3prime_fragment	FALSE	canonical	3	46	junction_15	11.0989864402116	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGGCAGTCCTGTGAGT	NA	False	NA	32	True	ATTAAA	-20	NA	45690829	45678248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679
ENSMUSG00000043987.19_2	chr9	-	5343	29	NIC	ENSMUSG00000043987.19	novel	5541	30	NA	NA	-3	-5	combination_of_known_junctions	FALSE	canonical	3	6	junction_18	18.9283018848733	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGGCAGTCCTGTGAGT	NA	False	NA	32	True	ATTAAA	-20	NA	45739940	45678248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679_45690909_45690987_45691135_45698723_45698810_45702380_45702465_45704229_45704311_45705349_45705728_45712762_45712841_45713940_45714076_45714470_45714627_45721001_45721207_45729275_45729388_45734943_45735063_45739799
ENSMUSG00000043987.19_20	chr9	-	5621	31	NIC	ENSMUSG00000043987.19	novel	5541	30	NA	NA	10	-5	combination_of_known_splicesites	FALSE	canonical	2	6	junction_18	19.8072938305284	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGGCAGTCCTGTGAGT	NA	False	NA	32	True	ATTAAA	-20	NA	45739927	45678248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679_45690909_45690987_45691135_45696180_45696328_45697075_45697220_45698723_45698810_45702380_45702465_45704229_45704311_45705349_45705728_45712762_45712841_45713940_45714076_45714470_45714627_45721001_45721207_45729275_45729388_45734943_45735063_45739799
ENSMUSG00000043987.19_28	chr9	-	879	1	ISM	ENSMUSG00000043987.19	ENSMUST00000117194.8	5541	30	60855	12	941	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCTATGAGGCAGTCC	NA	False	NA	25	True	ATTAAA	-13	NA	45679134	45678255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_45678300_45679100
ENSMUSG00000043987.19_4	chr9	-	2642	10	ISM	ENSMUSG00000043987.19	ENSMUST00000213154.2	6105	32	48480	-1307	-2716	-5	3prime_fragment	FALSE	canonical	3	64	junction_3	8.92492694578809	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGGCAGTCCTGTGAGT	NA	False	NA	32	True	ATTAAA	-20	NA	45686545	45678248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489
ENSMUSG00000043987.19_43	chr9	-	2868	11	ISM	ENSMUSG00000043987.19	ENSMUST00000213154.2	6105	32	47949	-1311	-3247	-1	3prime_fragment	FALSE	canonical	3	64	junction_3	8.47348806572594	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAGTCCTGTGAGTGTGC	NA	False	NA	36	True	ATTAAA	-24	NA	45687076	45678244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974
ENSMUSG00000043987.19_6	chr9	-	5931	32	NIC	ENSMUSG00000043987.19	novel	6105	32	NA	NA	-3	-5	combination_of_known_junctions	FALSE	canonical	3	20	junction_21	18.7691490839651	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGGCAGTCCTGTGAGT	NA	False	NA	32	True	ATTAAA	-20	NA	45739940	45678248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679_45690909_45690987_45691135_45693249_45693547_45696180_45696328_45697075_45697220_45698723_45698810_45702380_45702465_45704229_45704311_45705349_45705728_45712762_45712841_45713940_45714076_45714470_45714627_45721001_45721207_45729275_45729388_45734943_45735063_45739799
ENSMUSG00000043987.19_7	chr9	-	3834	19	ISM	ENSMUSG00000043987.19	ENSMUST00000213154.2	6105	32	41708	-1305	-9488	5	3prime_fragment	FALSE	canonical	3	25	junction_18	14.6457131468647	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGAGGCAGTCCTGTGA	NA	False	NA	30	True	ATTAAA	-18	NA	45693317	45678250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679_45690909_45690987_45691135_45693249
ENSMUSG00000043991.6_1	chr18	+	3129	2	FSM	ENSMUSG00000043991.6	ENSMUST00000051301.6	5957	2	9	2819	9	-2819	multi-exon	FALSE	canonical	3	21	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATCATCTTTGAGTGAAG	NA	False	NA	15	True	ATTAAA	-11	NA	36414158	36422769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36414603_36420084
ENSMUSG00000043991.6_3	chr18	+	3193	1	ISM	ENSMUSG00000043991.6	ENSMUST00000051301.6	5957	2	6022	2224	6022	-2224	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGCATAATGTGACATT	NA	False	NA	NA	False	AGTAAA	-12	NA	36420171	36423364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_36420200_36423400
ENSMUSG00000043993.7_1	chr11	-	1718	1	NIC	ENSMUSG00000043993.7	novel	1588	2	NA	NA	63	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTACTGCAGTATTGCTA	NA	False	NA	-2	True	NA	NA	NA	120122348	120120630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120120600_120122300
ENSMUSG00000043998.11_0	chr12	+	2505	1	FSM	ENSMUSG00000043998.11	ENSMUST00000060579.10	2614	1	39	70	39	-70	mono-exon	FALSE	NA	NA	NA	NA	NA	591	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATTCCCTAATCATTT	2333	False	NA	69	True	AATAAA	-15	NA	69230969	69233474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_69231000_69233500
ENSMUSG00000043999.7_0	chr11	+	2891	2	FSM	ENSMUSG00000043999.7	ENSMUST00000109430.2	2926	2	29	6	29	-6	multi-exon	FALSE	canonical	2	6	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAGAAGTGTGTTAC	4093	False	NA	NA	False	AATAAA	-18	NA	30835386	30843723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_30835543_30840988
ENSMUSG00000043999.7_1	chr11	+	2864	2	NIC	ENSMUSG00000043999.7	novel	2926	2	NA	NA	52	-14	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAGCAAAAAATAGAAG	4116	False	NA	NA	False	AATAAA	-10	NA	30835409	30843715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_30835547_30840988
ENSMUSG00000044005.14_1	chr10	+	2359	18	FSM	ENSMUSG00000044005.14	ENSMUST00000044776.13	2573	18	212	2	32	-2	multi-exon	FALSE	canonical	3	75	junction_3	13.3766309680488	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATAATTTTTATTTTAT	NA	False	NA	8	True	AATAAA	-14	NA	128030537	128045806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128030777_128035050_128035151_128035505_128035628_128036041_128036172_128036754_128036835_128037074_128037239_128037427_128037487_128039691_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
ENSMUSG00000044005.14_14	chr10	+	2324	18	FSM	ENSMUSG00000044005.14	ENSMUST00000159440.8	2398	18	5	69	5	1	multi-exon	FALSE	canonical	0	0	junction_3	26.6050181285294	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATTATAATTTTTATTTT	NA	False	NA	6	True	AATAAA	-12	NA	128030599	128045804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128030777_128035050_128035151_128035505_128035628_128036012_128036172_128036754_128036835_128037074_128037239_128037427_128037487_128039691_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
ENSMUSG00000044005.14_23	chr10	+	1009	6	ISM	ENSMUSG00000044005.14	ENSMUST00000135441.2	1529	11	3172	10	11	-2	3prime_fragment	FALSE	canonical	3	100	junction_1	6.88767014308903	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGAATTATAATTTTTAT	112	False	NA	3	True	AATAAA	-9	NA	128042804	128045801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
ENSMUSG00000044005.14_24	chr10	+	134	1	ISM	ENSMUSG00000044005.14	ENSMUST00000044776.13	2573	18	15347	2	2879	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATAATTTTTATTTTAT	2224	False	NA	8	True	AATAAA	-14	NA	128045672	128045806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128045700_128045800
ENSMUSG00000044006.9_0	chr8	-	1780	1	Genic_Genomic	ENSMUSG00000044006.9	novel	NA	NA	NA	NA	5540	1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTTTGTGTCAATTGAA	NA	False	NA	0	True	ATTAAA	-16	NA	70334797	70333017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_70333000_70334800
ENSMUSG00000044006.9_1	chr8	-	4045	8	FSM	ENSMUSG00000044006.9	ENSMUST00000057831.8	4314	8	270	-1	270	1	multi-exon	FALSE	canonical	0	0	junction_2	1.8516401995451	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTTTGTGTCAATTGAA	NA	False	NA	0	True	ATTAAA	-16	NA	70340067	70333017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70335859_70335949_70336108_70336640_70336750_70336936_70337216_70338037_70338194_70338645_70338919_70339083_70339183_70339937
ENSMUSG00000044017.17_18	chr5	+	1806	1	ISM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	106042	2	106035	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAGAGTCTTGAGCGTCA	NA	False	NA	27	True	AATAAA	-15	NA	129279855	129281661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_129279900_129281700
ENSMUSG00000044017.17_2	chr5	+	3320	13	ISM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	47227	4	47220	-4	3prime_fragment	FALSE	canonical	3	14	junction_1	14.247806848775	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTAGAGTCTTGAGCGT	NA	False	NA	25	True	AATAAA	-13	NA	129221040	129281659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_129221173_129239658_129239733_129248869_129248994_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
ENSMUSG00000044017.17_20	chr5	+	2696	8	NIC	ENSMUSG00000044017.17	novel	4141	25	NA	NA	65837	-3	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	20.8287477946678	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTAGAGTCTTGAGCGTC	4621	False	NA	26	True	AATAAA	-14	NA	129239657	129281660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_129239733_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
ENSMUSG00000044017.17_4	chr5	+	3190	12	ISM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	65844	3	65837	-3	3prime_fragment	FALSE	canonical	3	43	junction_2	8.40306909693916	121	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTAGAGTCTTGAGCGTC	4621	False	NA	26	True	AATAAA	-14	NA	129239657	129281660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_129239733_129248869_129248994_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
ENSMUSG00000044017.17_6	chr5	+	3067	11	NIC	ENSMUSG00000044017.17	novel	4141	25	NA	NA	65837	-2	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	16.6180624622728	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAGAGTCTTGAGCGTCA	4621	False	NA	27	True	AATAAA	-15	NA	129239657	129281661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_129239733_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
ENSMUSG00000044018.4_2	chr4	-	2091	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	18	5	18	-5	multi-exon	FALSE	canonical	3	1281	junction_1	0	931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTATTAAGTTTTAAAGTG	-13	True	NA	-5	True	AATAAA	-16	NA	49521075	49512600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_49514578_49520961
ENSMUSG00000044018.4_3	chr4	-	1766	1	ISM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	6726	6	6726	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTATTAAGTTTTAAAGT	6695	False	NA	-6	True	AATAAA	-15	NA	49514367	49512601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_49512600_49514400
ENSMUSG00000044026.4_0	chr19	+	3406	3	FSM	ENSMUSG00000044026.4	ENSMUST00000054098.4	3474	3	61	7	0	-7	multi-exon	FALSE	canonical	3	381	junction_1	3	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTATAGAAAGTGTCTCAC	NA	False	NA	28	True	AATAAA	-29	NA	38384488	38394051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_38384750_38388881_38389063_38391087
ENSMUSG00000044026.4_1	chr19	+	3221	2	NIC	ENSMUSG00000044026.4	novel	3474	3	NA	NA	4	-7	combination_of_known_splicesites	FALSE	canonical	3	41	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTATAGAAAGTGTCTCAC	NA	False	NA	28	True	AATAAA	-29	NA	38384492	38394051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_38384750_38391087
ENSMUSG00000044026.4_18	chr19	+	2306	1	ISM	ENSMUSG00000044026.4	ENSMUST00000054098.4	3474	3	7318	7	7257	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTATAGAAAGTGTCTCAC	NA	False	NA	28	True	AATAAA	-29	NA	38391745	38394051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_38391700_38394100
ENSMUSG00000044030.5_1	chr7	+	2530	1	FSM	ENSMUSG00000044030.5	ENSMUST00000053713.5	2734	1	16	188	16	-188	mono-exon	FALSE	NA	NA	NA	NA	NA	415	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTTCTTGTTCCCTTTA	NA	False	NA	24	True	AATAAA	-24	NA	18737984	18740514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18738000_18740500
ENSMUSG00000044033.17_0	chr2	-	6299	24	FSM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	10	-87	3	-6	multi-exon	TRUE	canonical	3	17	junction_12	5.82219207901242	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTCATCCTGAGGACCTCA	NA	False	NA	NA	False	ATTAAA	-14	NA	77000951	76840251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_76842102_76844737_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910_76861052_76869779_76869930_76871708_76871889_76872786_76872976_76875003_76875130_76875949_76876130_76879922_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
ENSMUSG00000044033.17_1	chr2	-	1229	1	ISM	ENSMUSG00000044033.17	ENSMUST00000049544.14	8969	23	159504	1	8786	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGAGGACCTCAATCTT	8166	False	NA	NA	False	ATTAAA	-19	NA	76841475	76840246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76840200_76841500
ENSMUSG00000044033.17_14	chr2	-	2821	3	ISM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	150588	-87	-112	-6	3prime_fragment	FALSE	canonical	3	25	junction_1	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTCATCCTGAGGACCTCA	6818	False	NA	NA	False	ATTAAA	-14	NA	76850373	76840251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76842102_76844737_76845592_76850256
ENSMUSG00000044033.17_18	chr2	-	5680	23	FSM	ENSMUSG00000044033.17	ENSMUST00000049544.14	8969	23	26	3263	1	-1618	multi-exon	FALSE	canonical	3	17	junction_11	5.83396297270922	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTCACCCCAAGGAAAGAT	NA	False	NA	NA	False	ATTAAA	-5	NA	77000953	76843508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910_76861052_76869779_76869930_76871708_76871889_76872786_76872976_76875003_76875130_76875949_76876130_76879922_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
ENSMUSG00000044033.17_2	chr2	-	3965	10	ISM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	127999	-92	1462	-1	3prime_fragment	FALSE	canonical	3	23	junction_8	4.59468291736341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGAGGACCTCAATCTT	8297	False	NA	NA	False	ATTAAA	-19	NA	76872962	76840246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76842102_76844737_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910_76861052_76869779_76869930_76871708_76871889_76872786
ENSMUSG00000044033.17_24	chr2	-	2024	12	ISM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	14	39576	-3	-4600	5prime_fragment	FALSE	canonical	3	25	junction_4	5.66269509178089	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTAAGAAGCCAGCACC	NA	False	NA	-6	True	AATAAA	-13	NA	77000947	76879914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
ENSMUSG00000044033.17_28	chr2	-	4487	14	ISM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	116018	-92	-9869	-1	3prime_fragment	FALSE	canonical	3	17	junction_12	5.82486000542848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGAGGACCTCAATCTT	9793	False	NA	NA	False	ATTAAA	-19	NA	76884943	76840246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76842102_76844737_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910_76861052_76869779_76869930_76871708_76871889_76872786_76872976_76875003_76875130_76875949_76876130_76879922_76880103_76884920
ENSMUSG00000044033.17_29	chr2	-	3501	8	ISM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	131138	-90	4601	-3	3prime_fragment	FALSE	canonical	3	25	junction_1	4.23300925429402	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCCTGAGGACCTCAATC	3049	False	NA	NA	False	ATTAAA	-17	NA	76869823	76840248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76842102_76844737_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910_76861052_76869779
ENSMUSG00000044033.17_8	chr2	-	2309	2	ISM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	155768	-90	5068	-3	3prime_fragment	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCCTGAGGACCTCAATC	9234	False	NA	NA	False	ATTAAA	-17	NA	76845193	76840248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76842102_76844737
ENSMUSG00000044037.16_1	chr9	+	5078	27	FSM	ENSMUSG00000044037.16	ENSMUST00000084926.9	5079	27	5	-4	5	0	multi-exon	FALSE	canonical	3	5	junction_2	6.964087930954	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTGTGCATGTGTGTT	NA	False	NA	2	True	AATAAA	-15	NA	110709246	110729596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110709298_110711781_110711892_110713085_110713215_110713934_110714134_110714455_110714522_110714850_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_13	chr9	+	2886	22	ISM	ENSMUSG00000044037.16	ENSMUST00000155014.2	5150	27	5448	1634	37	-1631	3prime_fragment	FALSE	canonical	3	15	junction_3	5.38621739892485	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCAGCGTTCATCTCATT	4846	False	NA	NA	False	NA	NA	NA	110714852	110727961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_14	chr9	+	4202	20	NIC	ENSMUSG00000044037.16	novel	4122	19	NA	NA	18	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	7.36691713975692	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTGCATGTGTGTTC	7074	False	NA	3	True	AATAAA	-16	NA	110717080	110729597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110717177_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_2	chr9	+	5082	27	FSM	ENSMUSG00000044037.16	ENSMUST00000130386.8	5056	27	-27	1	5	-1	multi-exon	FALSE	canonical	3	8	junction_1	6.41374264174641	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTGCATGTGTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	110709246	110729597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110709298_110711781_110711892_110713082_110713215_110713934_110714134_110714455_110714522_110714850_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_24	chr9	+	2605	6	ISM	ENSMUSG00000044037.16	ENSMUST00000156673.2	4122	19	7751	0	7751	0	3prime_fragment	FALSE	canonical	3	19	junction_1	6.33719180710194	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTGTGCATGTGTGTT	NA	False	NA	2	True	AATAAA	-15	NA	110724813	110729596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_25	chr9	+	2466	5	ISM	ENSMUSG00000044037.16	ENSMUST00000156673.2	4122	19	8642	-1	8642	-1	3prime_fragment	FALSE	canonical	3	22	junction_3	5.09901951359278	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTGCATGTGTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	110725704	110729597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_26	chr9	+	1851	1	ISM	ENSMUSG00000044037.16	ENSMUST00000130386.8	5056	27	18473	1	10684	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTGCATGTGTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	110727746	110729597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110727700_110729600
ENSMUSG00000044037.16_28	chr9	+	3568	28	NIC	ENSMUSG00000044037.16	novel	5079	27	NA	NA	1	-1626	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	7.41055488685824	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGTTCATCTCATTTATTT	NA	False	NA	NA	False	NA	NA	NA	110709242	110727966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110709298_110709409_110709526_110711781_110711892_110713085_110713215_110713934_110714134_110714455_110714522_110714850_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_33	chr9	+	3682	15	ISM	ENSMUSG00000044037.16	ENSMUST00000155014.2	5150	27	9783	-2	2125	-1	3prime_fragment	FALSE	canonical	3	17	junction_8	5.4832769883175	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTGCATGTGTGTTC	9181	False	NA	3	True	AATAAA	-16	NA	110719187	110729597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_34	chr9	+	3523	13	NIC	ENSMUSG00000044037.16	novel	5079	27	NA	NA	2283	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	8.9485411598142	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTATTTGTGTGCATGT	9339	False	NA	-3	True	AATAAA	-10	NA	110719345	110729591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110719531_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_35	chr9	+	3551	14	ISM	ENSMUSG00000044037.16	ENSMUST00000155014.2	5150	27	10023	6	2365	-3	3prime_fragment	FALSE	canonical	3	17	junction_7	5.56829571410888	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTTTATTTGTGTGCAT	9421	False	NA	-5	True	AATAAA	-8	NA	110719427	110729589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_39	chr9	+	4988	26	NIC	ENSMUSG00000044037.16	novel	5056	27	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	1	1	junction_18	7.67333043730035	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTTATTTGTGTGCATG	NA	False	NA	-4	True	AATAAA	-9	NA	110709236	110729590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110709298_110711781_110711892_110713082_110713215_110713934_110714134_110714455_110714522_110714850_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_7	chr9	+	5241	27	NIC	ENSMUSG00000044037.16	novel	5150	27	NA	NA	12	-1	combination_of_known_junctions	FALSE	canonical	3	5	junction_2	6.69109184357617	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTGCATGTGTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	110709312	110729597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110709526_110711781_110711892_110713085_110713215_110713934_110714134_110714455_110714522_110714850_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044037.16_8	chr9	+	5193	27	FSM	ENSMUSG00000044037.16	ENSMUST00000155014.2	5150	27	-41	-2	-41	-1	multi-exon	FALSE	canonical	3	12	junction_1	6.10945527743532	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTGCATGTGTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	110709363	110729597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110709526_110711781_110711892_110713082_110713215_110713934_110714134_110714455_110714522_110714850_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
ENSMUSG00000044042.20_0	chr2	+	4159	17	FSM	ENSMUSG00000044042.20	ENSMUST00000081349.9	4235	17	-51	127	-51	-2	multi-exon	FALSE	canonical	3	8	junction_2	4.19076365356005	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAATTCTTTTCACATTT	NA	False	NA	NA	False	NA	NA	NA	113271357	113540073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_113273005_113274686_113274805_113309246_113309309_113355495_113356287_113359657_113359809_113393627_113393716_113412442_113412505_113414375_113414465_113423431_113423562_113425367_113425515_113426677_113426738_113433513_113433635_113467076_113467170_113518453_113518506_113523353_113523504_113538207_113538293_113539760
ENSMUSG00000044042.20_2	chr2	+	2915	3	ISM	ENSMUSG00000044042.20	ENSMUST00000081349.9	4235	17	-14	229767	-14	-17968	5prime_fragment	FALSE	canonical	3	8	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGTAAGTGAGATCACAT	NA	False	NA	NA	False	NA	NA	NA	113271394	113310433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_113273005_113274686_113274805_113309246
ENSMUSG00000044042.20_5	chr2	+	3813	1	ISM	ENSMUSG00000044042.20	ENSMUST00000099576.9	11817	19	385216	3	4281	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATCTGGTGTGTGGTGGA	NA	False	NA	NA	False	AATAAA	-14	NA	113543296	113547109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_113543300_113547100
ENSMUSG00000044042.20_6	chr2	+	5225	13	ISM	ENSMUSG00000044042.20	ENSMUST00000081349.9	4235	17	-77	71391	-77	-54687	5prime_fragment	FALSE	canonical	3	8	junction_2	4.40564662929543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113271331	113468809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_113273005_113274686_113274805_113309246_113309309_113355495_113356287_113359657_113359809_113393627_113393716_113412442_113412505_113414375_113414465_113423431_113423562_113425367_113425515_113426677_113426738_113433513_113433635_113467076
ENSMUSG00000044042.20_7	chr2	+	1700	1	ISM	ENSMUSG00000044042.20	ENSMUST00000099576.9	11817	19	382600	4732	1665	2180	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTCTGTTTCTATAGA	NA	False	NA	NA	False	AAAAAG	-17	NA	113540680	113542380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_113540700_113542400
ENSMUSG00000044066.15_0	chr11	-	2174	1	Genic_Genomic	ENSMUSG00000044066.15	novel	NA	NA	NA	NA	20519	346	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTTAGTTTAATATTT	NA	False	NA	NA	False	AATAAA	-16	NA	20178864	20176690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_20176700_20178900
ENSMUSG00000044066.15_1	chr11	-	5132	7	FSM	ENSMUSG00000044066.15	ENSMUST00000050611.14	4804	7	18	-346	-17	346	multi-exon	FALSE	canonical	3	49	junction_3	29.8756682863422	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTTAGTTTAATATTT	3073	False	NA	NA	False	AATAAA	-16	NA	20199400	20176690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_20179482_20180423_20180595_20186005_20186103_20188465_20188589_20189195_20190699_20191885_20192239_20199306
ENSMUSG00000044066.15_10	chr11	-	2160	4	FSM	ENSMUSG00000044066.15	ENSMUST00000109596.8	2171	4	10	1	10	0	multi-exon	FALSE	canonical	3	88	junction_1	18.3726850393609	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTAGCTCAGTTGAC	3065	False	NA	-9	True	AATAAA	-16	NA	20199408	20188386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_20188589_20189195_20190699_20191885_20192239_20199306
ENSMUSG00000044066.15_11	chr11	-	2772	3	FSM	ENSMUSG00000044066.15	ENSMUST00000162811.2	2788	3	15	1	4	-1	multi-exon	FALSE	canonical	3	111	junction_1	11	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTTGTAGCTCAGTTGA	3059	False	NA	-10	True	AATAAA	-15	NA	20199414	20188387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_20190699_20191885_20192239_20199306
ENSMUSG00000044066.15_2	chr11	-	4041	5	ISM	ENSMUSG00000044066.15	ENSMUST00000050611.14	4804	7	9365	-347	9330	347	3prime_fragment	FALSE	canonical	3	49	junction_3	14.6372811683044	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTAGTTTAATATTTT	NA	False	NA	NA	False	AATAAA	-17	NA	20190053	20176689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_20179482_20180423_20180595_20186005_20186103_20188465_20188589_20189195
ENSMUSG00000044068.8_0	chr11	+	2870	1	FSM	ENSMUSG00000044068.8	ENSMUST00000229075.2	1287	1	-1190	-393	33	393	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATTGTCTGAATCTG	NA	False	NA	9	True	AATATA	-15	NA	22922037	22924907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_22922000_22924900
ENSMUSG00000044080.10_0	chr3	-	598	3	FSM	ENSMUSG00000044080.10	ENSMUST00000060738.9	677	3	75	4	-39	-1	multi-exon	FALSE	canonical	3	340	junction_1	21.5	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATCAATGTCTGTACCC	NA	False	NA	-7	True	AATAAA	-16	NA	90421624	90418344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90418672_90419302_90419457_90421507
ENSMUSG00000044098.15_0	chr3	+	6268	7	FSM	ENSMUSG00000044098.15	ENSMUST00000068879.11	6712	7	426	18	10	5	multi-exon	FALSE	canonical	3	59	junction_2	6.92218655243173	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGATGTTTCAAAATGAA	NA	False	NA	23	True	AATAAA	-20	NA	103821892	103873934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103822470_103835666_103836341_103860952_103861091_103861420_103861564_103867318_103867487_103868788_103868898_103869475
ENSMUSG00000044098.15_1	chr3	+	4311	8	FSM	ENSMUSG00000044098.15	ENSMUST00000051139.13	4762	8	457	-6	10	6	multi-exon	FALSE	canonical	3	18	junction_7	18.1411697753019	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGATGTTTCAAAATGAAT	NA	False	NA	24	True	AATAAA	-21	NA	103821892	103873935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103822470_103835666_103836341_103860952_103861091_103861420_103861564_103867318_103867487_103868788_103868898_103869475_103869932_103871889
ENSMUSG00000044098.15_11	chr3	+	5554	6	NIC	ENSMUSG00000044098.15	novel	6712	7	NA	NA	50	5	intron_retention	FALSE	canonical	3	10	junction_1	24.576411454889	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGATGTTTCAAAATGAA	NA	False	NA	23	True	AATAAA	-20	NA	103821932	103873934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_103822470_103860952_103861091_103861420_103861564_103867318_103867487_103868788_103868898_103869475
ENSMUSG00000044098.15_14	chr3	+	5381	6	ISM	ENSMUSG00000044098.15	ENSMUST00000068879.11	6712	7	14484	44	17	-21	3prime_fragment	FALSE	canonical	3	59	junction_1	6.8818602136341	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAAACAAAGTCTGATTT	2644	False	NA	-3	True	NA	NA	NA	103835950	103873908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_103836341_103860952_103861091_103861420_103861564_103867318_103867487_103868788_103868898_103869475
ENSMUSG00000044098.15_20	chr3	+	2656	1	ISM	ENSMUSG00000044098.15	ENSMUST00000068879.11	6712	7	49813	17	35346	6	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGATGTTTCAAAATGAAT	7205	False	NA	24	True	AATAAA	-21	NA	103871279	103873935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_103871300_103873900
ENSMUSG00000044117.13_1	chr16	+	1844	6	FSM	ENSMUSG00000044117.13	ENSMUST00000056521.12	2394	6	43	507	-10	-507	multi-exon	TRUE	canonical	3	47	junction_1	4.9152822909778	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATAACATCTTATATGTT	NA	False	NA	2	True	AATAAA	-12	NA	13804510	13918857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13804758_13867246_13867371_13906809_13906884_13911752_13911868_13913767_13913851_13917656
ENSMUSG00000044117.13_5	chr16	+	729	1	ISM	ENSMUSG00000044117.13	ENSMUST00000056521.12	2394	6	113642	526	113572	-526	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAATGAAAAACAC	NA	False	NA	-17	True	NA	NA	NA	13918109	13918838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_13918100_13918800
ENSMUSG00000044122.16_0	chr11	+	1128	3	FSM	ENSMUSG00000044122.16	ENSMUST00000060539.13	960	3	-131	-37	-131	0	multi-exon	FALSE	canonical	3	12	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTACCGCTATTCTCTGC	NA	False	NA	7	True	AATAAA	-16	NA	78085398	78096330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78085781_78092637_78092719_78095665
ENSMUSG00000044122.16_1	chr11	+	1265	4	FSM	ENSMUSG00000044122.16	ENSMUST00000108317.3	1359	4	-167	261	-137	-2	multi-exon	FALSE	canonical	2	5	junction_2	3.74165738677394	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCTACCGCTATTCTCT	NA	False	NA	5	True	AATAAA	-14	NA	78085392	78096328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78085781_78092637_78092719_78094890_78095024_78095665
ENSMUSG00000044134.10_0	chr5	+	2362	4	FSM	ENSMUSG00000044134.10	ENSMUST00000056654.8	2368	4	6	0	-4	0	multi-exon	FALSE	canonical	3	24	junction_1	9.62635271879577	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGGCTGGGTGTATTA	5430	False	NA	-1	True	AATAAA	-10	NA	121987063	121992662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_121987188_121988532_121988610_121989230_121989343_121990613
ENSMUSG00000044134.10_1	chr5	+	2282	3	FSM	ENSMUSG00000044134.10	ENSMUST00000198271.5	2335	3	22	31	1	2	multi-exon	FALSE	canonical	2	8	junction_1	19.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGCTGGGTGTATTATT	5435	False	NA	1	True	AATAAA	-12	NA	121987068	121992664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_121987188_121989230_121989343_121990613
ENSMUSG00000044134.10_3	chr5	+	4297	2	NIC	ENSMUSG00000044134.10	novel	2368	4	NA	NA	27	0	intron_retention	FALSE	canonical	3	47	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGGCTGGGTGTATTA	5461	False	NA	-1	True	AATAAA	-10	NA	121987094	121992662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121989343_121990613
ENSMUSG00000044134.10_5	chr5	+	1641	1	ISM	ENSMUSG00000044134.10	ENSMUST00000198271.5	2335	3	3975	33	3954	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGGCTGGGTGTATTA	9388	False	NA	-1	True	AATAAA	-10	NA	121991021	121992662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_121991000_121992700
ENSMUSG00000044139.13_0	chr7	-	2156	11	FSM	ENSMUSG00000044139.13	ENSMUST00000121394.3	2134	11	-22	0	-22	0	multi-exon	FALSE	canonical	0	0	junction_6	0.806225774829855	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTTCTCTCTGATCTGC	NA	False	NA	NA	False	AGTAAA	-32	NA	127490164	127485012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127485454_127485699_127485917_127486121_127486268_127486348_127486591_127486670_127486822_127487466_127487687_127487817_127487973_127488105_127488372_127488650_127488814_127488908_127488930_127490030
ENSMUSG00000044145.3_0	chr2	-	318	2	FSM	ENSMUSG00000044145.3	ENSMUST00000150956.2	2364	2	1	2045	1	-2045	multi-exon	FALSE	canonical	3	36	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGTAGATCTTCTCTCG	NA	False	NA	-1	True	ATTAAA	-16	NA	127050173	127046531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127046771_127050094
ENSMUSG00000044147.9_1	chr12	+	1538	2	FSM	ENSMUSG00000044147.9	ENSMUST00000050063.9	1534	2	-6	2	-6	-2	multi-exon	FALSE	canonical	3	1327	junction_1	0	1438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAAACTGCCGTTTGTCT	NA	False	NA	28	True	AGTAAA	-17	NA	69418917	69420555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_69418998_69419097
ENSMUSG00000044147.9_2	chr12	+	1329	1	ISM	ENSMUSG00000044147.9	ENSMUST00000050063.9	1534	2	303	2	303	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAAACTGCCGTTTGTCT	NA	False	NA	28	True	AGTAAA	-17	NA	69419226	69420555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_69419200_69420600
ENSMUSG00000044148.7_1	chrX	-	2589	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	105	5	105	-5	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTCTTACAGTTTTTA	NA	False	NA	-8	True	AATAAA	-20	NA	12539802	12521122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
ENSMUSG00000044148.7_3	chrX	-	3138	7	NNC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	105	-5	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	81.2617512869506	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTCTTACAGTTTTTA	NA	False	NA	-8	True	AATAAA	-20	NA	12539802	12521122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_12523275_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
ENSMUSG00000044149.8_0	chrX	-	3827	3	FSM	ENSMUSG00000044149.8	ENSMUST00000239259.2	3882	3	48	7	48	-3	multi-exon	FALSE	canonical	3	10	junction_2	0.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAATTAGTGCTGTAAT	NA	False	NA	NA	False	AATAAA	-16	NA	36167118	36151199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36154166_36155277_36155409_36166388
ENSMUSG00000044149.8_2	chrX	-	2300	1	ISM	ENSMUSG00000044149.8	ENSMUST00000239259.2	3882	3	13667	7	13053	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAATTAGTGCTGTAAT	NA	False	NA	NA	False	AATAAA	-16	NA	36153499	36151199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_36151200_36153500
ENSMUSG00000044149.8_3	chrX	-	3041	2	ISM	ENSMUSG00000044149.8	ENSMUST00000057093.8	3264	3	11201	2	11201	-2	3prime_fragment	FALSE	canonical	3	11	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAATTAGTGCTGTAATT	NA	False	NA	NA	False	AATAAA	-17	NA	36155351	36151198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_36154166_36155277
ENSMUSG00000044150.13_33	chrX	+	3319	12	FSM	ENSMUSG00000044150.13	ENSMUST00000112464.8	3366	12	31	16	-20	-16	multi-exon	FALSE	canonical	3	339	junction_9	109.675027103931	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTTACCTGGCAGTTG	NA	False	NA	7	True	AATAAA	-20	NA	158315694	158376061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
ENSMUSG00000044150.13_34	chrX	+	3341	13	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	-16	-16	at_least_one_novel_splicesite	FALSE	canonical	3	151	junction_11	167.554634539172	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTTACCTGGCAGTTG	NA	False	NA	7	True	AATAAA	-20	NA	158315698	158376061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158374327_158374354_158375066
ENSMUSG00000044150.13_41	chrX	+	4137	12	NIC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	-15	-16	combination_of_known_junctions	FALSE	canonical	3	111	junction_9	153.898914983368	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTTACCTGGCAGTTG	NA	False	NA	7	True	AATAAA	-20	NA	158315699	158376061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158350362_158350914_158351011_158357940_158358094_158375066
ENSMUSG00000044150.13_50	chrX	+	3964	8	ISM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	-16	30433	-16	10072	5prime_fragment	FALSE	canonical	3	421	junction_5	81.1237402027902	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTTGTGTGCAAGTTTT	NA	False	NA	9	True	NA	NA	NA	158315698	158344957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833
ENSMUSG00000044150.13_51	chrX	+	3318	12	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	-22	-16	at_least_one_novel_splicesite	TRUE	canonical	3	147	junction_5	151.634892079191	91	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTTACCTGGCAGTTG	NA	False	NA	7	True	AATAAA	-20	NA	158315692	158376061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340441_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
ENSMUSG00000044155.12_0	chr6	+	743	4	FSM	ENSMUSG00000044155.12	ENSMUST00000056398.11	807	4	63	1	1	-1	multi-exon	FALSE	canonical	3	968	junction_1	14.522013940528	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTCTTTTCTTTCC	-8	True	NA	16	True	AATAAA	-16	NA	18848640	18854051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_18848763_18849624_18849666_18851634_18851763_18853599
ENSMUSG00000044164.3_0	chr13	+	3333	2	FSM	ENSMUSG00000044164.3	ENSMUST00000059986.3	3544	2	201	10	-72	-10	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAATGAGATGCATGGTT	3845	False	NA	NA	False	ATTAAA	-11	NA	43769386	43824411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_43769544_43821235
ENSMUSG00000044164.3_2	chr13	+	3429	3	FSM	ENSMUSG00000044164.3	ENSMUST00000161817.2	457	3	-103	-2869	-103	-10	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAATGAGATGCATGGTT	3814	False	NA	NA	False	ATTAAA	-11	NA	43769355	43824411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_43769544_43819233_43819299_43821235
ENSMUSG00000044167.7_0	chr3	+	4931	3	FSM	ENSMUSG00000044167.7	ENSMUST00000053764.7	8665	3	49	3685	49	-3685	multi-exon	FALSE	canonical	3	61	junction_1	0	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATATAGATGTATGGAGT	NA	False	NA	NA	False	TATAAA	-15	NA	52175805	52256957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_52176844_52252459_52253812_52254416
ENSMUSG00000044167.7_2	chr3	+	4061	2	ISM	ENSMUSG00000044167.7	ENSMUST00000053764.7	8665	3	77094	3126	77094	-3126	3prime_fragment	FALSE	canonical	3	61	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTTAAGTGGCTTGGTG	NA	False	NA	4	True	TATAAA	-19	NA	52252850	52257516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_52253812_52254416
ENSMUSG00000044167.7_3	chr3	+	2497	1	ISM	ENSMUSG00000044167.7	ENSMUST00000053764.7	8665	3	79265	3124	79265	-3124	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTAAGTGGCTTGGTGTG	NA	False	NA	6	True	TATAAA	-21	NA	52255021	52257518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_52255000_52257500
ENSMUSG00000044176.13_0	chr18	+	127	1	ISM	ENSMUSG00000044176.13	ENSMUST00000055725.12	7817	9	11	119022	11	-103301	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGCGAAAAACAGGACCCT	NA	False	NA	1	True	AATAAA	-9	NA	62681992	62682119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_62682000_62682100
ENSMUSG00000044197.9_0	chr5	+	1492	2	FSM	ENSMUSG00000044197.9	ENSMUST00000051293.8	4157	2	73	2592	73	1060	multi-exon	FALSE	canonical	3	6	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTGACATGATACTTGAT	1428	False	NA	NA	False	AATGAA	-33	NA	139366408	139379578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_139366499_139378176
ENSMUSG00000044197.9_1	chr5	+	3896	1	ISM	ENSMUSG00000044197.9	ENSMUST00000051293.8	4157	2	11935	4	2731	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACCCTGTTTCCCTTTAT	540	False	NA	1	True	ATTAAA	-14	NA	139378270	139382166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_139378300_139382200
ENSMUSG00000044199.7_0	chr10	-	1910	1	FSM	ENSMUSG00000044199.7	ENSMUST00000053646.7	2386	1	475	1	475	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCGTTTCTCAGTGTA	7838	False	NA	NA	False	ATTAAA	-16	NA	81335491	81333581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81333600_81335500
ENSMUSG00000044201.11_0	chr18	-	1926	15	FSM	ENSMUSG00000044201.11	ENSMUST00000060710.9	1945	15	7	12	-2	-8	multi-exon	FALSE	canonical	3	155	junction_14	20.2922524674833	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAACCAAAACCTCTAGA	2799	False	NA	-27	True	AATAAA	-10	NA	34884579	34866057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
ENSMUSG00000044201.11_3	chr18	-	1923	15	NNC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	-3	-8	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_13	49.8334470910812	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAACCAAAACCTCTAGA	2798	False	NA	-27	True	AATAAA	-10	NA	34884580	34866057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884013_34884166_34884265_34884366
ENSMUSG00000044211.10_0	chr6	-	732	1	FSM	ENSMUSG00000044211.10	ENSMUST00000056948.10	537	1	-14	-181	-14	181	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTAATTTATGTTTTATA	NA	False	NA	NA	False	AATAAA	-17	NA	48502038	48501306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_48501300_48502000
ENSMUSG00000044211.10_1	chr6	-	679	2	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-12	182	multi-exon	FALSE	non_canonical	3	441	junction_1	0	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAATTTATGTTTTATAT	NA	False	NA	NA	False	AATAAA	-18	NA	48502036	48501305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_48501909_48501960
ENSMUSG00000044216.8_0	chr15	-	514	1	ISM	ENSMUSG00000044216.8	ENSMUST00000057801.8	2152	2	21010	4	21010	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTAGGCTGGTAGAGAG	NA	False	NA	NA	False	AATAAA	-15	NA	79368432	79367918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79367900_79368400
ENSMUSG00000044216.8_1	chr15	-	2747	2	FSM	ENSMUSG00000044216.8	ENSMUST00000057801.8	2152	2	-599	4	-599	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTAGGCTGGTAGAGAG	6829	False	NA	NA	False	AATAAA	-15	NA	79390041	79367918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79370021_79389396
ENSMUSG00000044217.18_1	chr15	+	1571	4	FSM	ENSMUSG00000044217.18	ENSMUST00000169082.3	1797	4	216	10	149	-2	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATATTGTGCCTTCATCTC	NA	False	NA	NA	False	AATAAA	-11	NA	99488878	99492700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99489516_99490542_99490708_99491126_99491211_99492015
ENSMUSG00000044221.15_0	chr5	-	2523	10	FSM	ENSMUSG00000044221.15	ENSMUST00000078945.12	2538	10	-7	22	-7	-12	multi-exon	FALSE	canonical	3	432	junction_9	46.2793450448229	842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACCTGTGTAGAAGAATCA	NA	False	NA	-20	True	AATAAA	-14	NA	88824037	88807328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551_88821709_88823616
ENSMUSG00000044221.15_2	chr5	-	603	1	ISM	ENSMUSG00000044221.15	ENSMUST00000078945.12	2538	10	16101	20	11335	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTGTGTAGAAGAATCAAA	NA	False	NA	-18	True	AATAAA	-16	NA	88807929	88807326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_88807300_88807900
ENSMUSG00000044224.17_2	chr15	-	2096	12	FSM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	-46	10	-46	0	multi-exon	TRUE	canonical	3	660	junction_1	60.8163473021321	1063	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATGTGCCTTTCTGCTT	NA	False	NA	-25	True	ATTAAA	-13	NA	10470648	10446851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460040_10460193_10461205_10461511_10461961_10462085_10462308_10462433_10463972_10464067_10470350
ENSMUSG00000044231.4_0	chr13	-	2277	1	FSM	ENSMUSG00000044231.4	ENSMUST00000052747.4	2294	1	16	1	16	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGCTGGAAACGTGTCT	NA	False	NA	-2	True	AATAAA	-17	NA	47168310	47166033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_47166000_47168300
ENSMUSG00000044250.9_10	chr15	+	2236	2	NNC	ENSMUSG00000044250.9	novel	2185	6	NA	NA	15479	-6	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	0	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACAGAAATTGTTTCCA	NA	False	NA	4	True	AATAAA	-5	NA	97274576	97283551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_97275170_97281908
ENSMUSG00000044250.9_11	chr15	+	2245	2	NNC	ENSMUSG00000044250.9	novel	1790	2	NA	NA	15477	-2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	0	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAATTGTTTCCAAAAG	NA	False	NA	8	True	AATAAA	-9	NA	97274574	97283555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_97275170_97281905
ENSMUSG00000044250.9_15	chr15	+	1442	1	ISM	ENSMUSG00000044250.9	ENSMUST00000059433.8	2185	6	137128	0	23018	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTGTTTCCAAAAGTG	NA	False	NA	10	True	AATAAA	-11	NA	97282115	97283557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_97282100_97283600
ENSMUSG00000044252.19_0	chr18	-	3898	28	FSM	ENSMUSG00000044252.19	ENSMUST00000074352.11	3956	28	28	30	-7	-6	multi-exon	FALSE	canonical	3	91	junction_13	124.793898676083	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATCAAATAAAAAAGTGT	NA	False	NA	-38	True	AATAAA	-9	NA	13074870	12888400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_13004134_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
ENSMUSG00000044252.19_17	chr18	-	3830	29	NIC	ENSMUSG00000044252.19	novel	3956	28	NA	NA	7	-3	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	126.821317938561	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCAAATAAAAAAGTGTGAA	NA	False	NA	-35	True	AATAAA	-12	NA	13074891	12888397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_12889153_12889244_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_13004134_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
ENSMUSG00000044252.19_2	chr18	-	2699	14	FSM	ENSMUSG00000044252.19	ENSMUST00000234871.2	2818	14	106	13	-43	-3	multi-exon	TRUE	canonical	3	45	junction_13	91.3749671156418	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCAAATAAAAAAGTGTGAA	NA	False	NA	-35	True	AATAAA	-12	NA	12996391	12888397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996128
ENSMUSG00000044252.19_4	chr18	-	2595	13	FSM	ENSMUSG00000044252.19	ENSMUST00000118313.8	2893	13	282	16	-8	-6	multi-exon	FALSE	canonical	3	43	junction_12	94.3352473304061	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATCAAATAAAAAAGTGT	NA	False	NA	-38	True	AATAAA	-9	NA	12995488	12888400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12995163
ENSMUSG00000044252.19_5	chr18	-	2705	14	FSM	ENSMUSG00000044252.19	ENSMUST00000121808.8	3030	14	295	30	45	-6	multi-exon	FALSE	canonical	3	56	junction_13	88.7068171466208	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATCAAATAAAAAAGTGT	NA	False	NA	-38	True	AATAAA	-9	NA	12995435	12888400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12995163
ENSMUSG00000044252.19_7	chr18	-	2516	13	NIC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	-26	-6	intron_retention	TRUE	canonical	3	22	junction_12	99.8294030945904	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATCAAATAAAAAAGTGT	NA	False	NA	-38	True	AATAAA	-9	NA	12996374	12888400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12996128
ENSMUSG00000044252.19_76	chr18	-	3232	4	FSM	ENSMUSG00000044252.19	ENSMUST00000141651.2	681	4	-1	-2550	-1	2550	multi-exon	FALSE	canonical	3	113	junction_2	8.64098759787715	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTAAGGAGTGCACGT	NA	False	NA	NA	False	AATAAA	-20	NA	13074850	13058531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_13061393_13062064_13062151_13066636_13066760_13074688
ENSMUSG00000044254.7_0	chr4	-	3278	12	NNC	ENSMUSG00000044254.7	novel	3521	12	NA	NA	238	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	4.15803513673792	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCGACTCAGAGGCTGCC	NA	False	NA	NA	False	AATAAA	-22	NA	106321288	106299536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_106300756_106301873_106302056_106303792_106303971_106304326_106304476_106304703_106304878_106306056_106306241_106307236_106307434_106311421_106311564_106311709_106311850_106314061_106314186_106316033_106316226_106320891
ENSMUSG00000044254.7_1	chr4	-	3268	12	FSM	ENSMUSG00000044254.7	ENSMUST00000049507.6	3521	12	238	15	238	-15	multi-exon	FALSE	canonical	1	3	junction_11	3.44016144153173	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCATCCGACTCAGAGGC	NA	False	NA	NA	False	AATAAA	-18	NA	106321288	106299540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_106300756_106301873_106302056_106303792_106303971_106304326_106304476_106304703_106304878_106306056_106306241_106307236_106307434_106311421_106311564_106311709_106311844_106314061_106314186_106316033_106316226_106320891
ENSMUSG00000044279.16_0	chr17	+	1104	4	ISM	ENSMUSG00000044279.16	ENSMUST00000071826.10	1194	5	3072	5	-54	-5	3prime_fragment	TRUE	canonical	3	14	junction_1	93.9657147876584	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAGAAAAAAGATTTTAGC	1472	False	NA	NA	False	AATAAA	-20	NA	57369176	57372907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_57369229_57369594_57369767_57370636_57370699_57372089
ENSMUSG00000044279.16_1	chr17	+	1158	4	FSM	ENSMUSG00000044279.16	ENSMUST00000097299.10	1206	4	40	8	-12	-2	multi-exon	FALSE	canonical	3	144	junction_1	33.4099120355355	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAAGATTTTAGCTGT	1566	False	NA	NA	False	AATAAA	-23	NA	57369270	57372910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089
ENSMUSG00000044279.16_2	chr17	+	781	5	FSM	ENSMUSG00000044279.16	ENSMUST00000169543.8	778	5	-10	7	-10	-2	multi-exon	FALSE	canonical	3	51	junction_4	66.6520817379322	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAAGATTTTAGCTGT	1568	False	NA	NA	False	AATAAA	-23	NA	57369272	57372910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089_57372234_57372608
ENSMUSG00000044279.16_4	chr17	+	1361	3	FSM	ENSMUSG00000044279.16	ENSMUST00000163763.2	868	3	-8	-485	8	0	multi-exon	FALSE	canonical	3	202	junction_2	10.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGATTTTAGCTGTAA	1586	False	NA	NA	False	AATAAA	-25	NA	57369290	57372912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_57369767_57370636_57370699_57372089
ENSMUSG00000044285.9_0	chr14	+	294	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	536	-145	536	-43	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGCATAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	46322120	46322414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_46322100_46322400
ENSMUSG00000044287.7_0	chr8	+	631	3	FSM	ENSMUSG00000044287.7	ENSMUST00000060167.6	617	3	-19	5	-19	1	multi-exon	FALSE	canonical	2	4	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAAGTTGGTTCCTTTCTC	NA	False	NA	NA	False	ATTAAA	-16	NA	106620179	106621650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106620300_106620997_106621113_106621254
ENSMUSG00000044296.11_1	chr11	-	2361	5	FSM	ENSMUSG00000044296.11	ENSMUST00000049625.2	2408	5	38	9	32	-9	multi-exon	FALSE	canonical	0	0	junction_2	1.08972473588517	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACTCTGGAAACAAGTGC	NA	False	NA	NA	False	ACTAAA	-12	NA	50732341	50722870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_50724799_50728736_50728833_50729236_50729364_50731352_50731418_50732196
ENSMUSG00000044308.18_0	chr2	+	6212	39	FSM	ENSMUSG00000044308.18	ENSMUST00000055758.16	8072	39	20	1840	20	-47	multi-exon	FALSE	non_canonical	3	59	junction_28	22.5386863475108	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTTTTCTTATTGTGA	4346	False	NA	20	True	AGTAAA	-25	NA	69727609	69852517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_69728184_69744757_69744898_69747420_69747580_69752588_69752733_69753227_69753278_69764732_69764800_69766235_69766367_69768427_69768657_69774643_69774824_69775357_69775492_69778767_69778855_69781686_69781753_69781843_69781934_69783084_69783214_69783831_69783885_69783986_69784121_69784619_69784706_69786308_69786451_69789910_69790008_69795717_69795860_69800480_69800586_69801403_69801578_69803492_69803954_69808062_69808152_69809662_69809813_69813471_69813606_69819129_69819241_69821768_69821970_69824019_69824157_69830801_69830888_69833697_69833804_69839446_69839551_69843433_69843559_69846475_69846584_69846683_69846810_69848736_69848917_69850794_69851005_69851455_69851596_69851886
ENSMUSG00000044308.18_1	chr2	+	6217	39	NIC	ENSMUSG00000044308.18	novel	8081	39	NA	NA	16	-55	combination_of_known_junctions	TRUE	non_canonical	3	25	junction_2	26.5792730568894	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTTTACATTTTTTTCT	4342	False	NA	12	True	AGTAAA	-17	NA	69727605	69852509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_69728184_69744757_69744898_69747423_69747580_69752588_69752733_69753227_69753278_69764732_69764800_69766235_69766367_69768427_69768657_69774643_69774824_69775357_69775492_69778767_69778855_69781686_69781753_69781843_69781934_69783084_69783214_69783831_69783885_69783986_69784121_69784619_69784706_69786308_69786451_69789910_69790008_69795717_69795860_69800480_69800586_69801403_69801578_69803492_69803954_69808062_69808152_69809662_69809813_69813471_69813606_69819129_69819241_69821768_69821982_69824019_69824157_69830801_69830888_69833697_69833804_69839446_69839551_69843433_69843559_69846475_69846584_69846683_69846810_69848736_69848917_69850794_69851005_69851455_69851596_69851886
ENSMUSG00000044308.18_2	chr2	+	6181	39	NIC	ENSMUSG00000044308.18	novel	8072	39	NA	NA	-18	-56	combination_of_known_junctions	FALSE	non_canonical	3	25	junction_2	26.5227127878882	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAACTTTACATTTTTTTC	4365	False	NA	11	True	AGTAAA	-16	NA	69727628	69852508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_69728184_69744757_69744898_69747423_69747580_69752588_69752733_69753227_69753278_69764732_69764800_69766235_69766367_69768427_69768657_69774643_69774824_69775357_69775492_69778767_69778855_69781686_69781753_69781843_69781934_69783084_69783214_69783831_69783885_69783986_69784121_69784619_69784706_69786308_69786451_69789910_69790008_69795717_69795860_69800480_69800586_69801403_69801578_69803492_69803954_69808062_69808152_69809662_69809813_69813471_69813606_69819129_69819241_69821768_69821970_69824019_69824157_69830801_69830888_69833697_69833804_69839446_69839551_69843433_69843559_69846475_69846584_69846683_69846810_69848736_69848917_69850794_69851005_69851455_69851596_69851886
ENSMUSG00000044308.18_3	chr2	+	6591	39	NIC	ENSMUSG00000044308.18	novel	8072	39	NA	NA	18	-7	combination_of_known_junctions	FALSE	non_canonical	3	58	junction_28	22.6070858893837	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACATATACATGGCAGA	4344	False	NA	NA	False	AATAAA	-13	NA	69727607	69852882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_69728184_69744757_69744898_69747420_69747580_69752588_69752733_69753227_69753278_69764732_69764800_69766235_69766367_69768427_69768657_69774643_69774824_69775357_69775492_69778767_69778855_69781686_69781753_69781843_69781934_69783084_69783214_69783831_69783885_69783986_69784121_69784619_69784706_69786308_69786451_69789910_69790008_69795717_69795860_69800480_69800586_69801403_69801578_69803492_69803954_69808062_69808152_69809662_69809813_69813471_69813606_69819129_69819241_69821768_69821982_69824019_69824157_69830801_69830888_69833697_69833804_69839446_69839551_69843433_69843559_69846475_69846584_69846683_69846810_69848736_69848917_69850794_69851005_69851455_69851596_69851886
ENSMUSG00000044308.18_75	chr2	+	1805	1	ISM	ENSMUSG00000044308.18	ENSMUST00000055758.16	8072	39	124950	13	1684	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATCCTTATAATGTTGAA	NA	False	NA	10	True	AATAAA	-24	NA	69852539	69854344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_69852500_69854300
ENSMUSG00000044312.5_0	chr10	+	1802	2	FSM	ENSMUSG00000044312.5	ENSMUST00000050103.2	1540	2	-40	-222	-40	222	multi-exon	FALSE	canonical	3	7	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAAGGTGACTCCATTGT	9224	False	NA	NA	False	AATAAA	-20	NA	61968828	61970764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_61969107_61969240
ENSMUSG00000044313.14_1	chr3	-	2953	7	FSM	ENSMUSG00000044313.14	ENSMUST00000061831.11	3558	7	-6	611	-6	-4	multi-exon	FALSE	canonical	0	0	junction_4	1.34370962471642	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATAATGATTGGTTTCA	NA	False	NA	NA	False	AATATA	-7	NA	101743545	101721002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_101722569_101725938_101726134_101726681_101726861_101730555_101730848_101734046_101734188_101742309_101742581_101743236
ENSMUSG00000044317.8_0	chr7	+	2012	2	FSM	ENSMUSG00000044317.8	ENSMUST00000060225.6	2882	2	19	851	19	-851	multi-exon	FALSE	canonical	2	8	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAAGAAAAAAATGAGGTT	NA	False	NA	NA	False	NA	NA	NA	18946481	18957248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18946560_18955314
ENSMUSG00000044320.15_10	chr2	-	1536	6	ISM	ENSMUSG00000044320.15	ENSMUST00000050003.9	1672	7	1	273	1	-1	intron_retention	FALSE	canonical	3	17	junction_1	5.63560112144215	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAAGCCACTCTAGGTG	NA	False	NA	NA	False	AATAAA	-41	NA	30691718	30685585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_30685818_30686156_30686296_30686412_30686579_30687879_30687993_30690735_30690829_30690925
ENSMUSG00000044320.15_19	chr2	-	1433	7	NIC	ENSMUSG00000044320.15	novel	1672	7	NA	NA	5	2	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	8.78287475083693	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCCACTCTAGGTGCCT	NA	False	NA	NA	False	AATAAA	-44	NA	30691714	30685582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30685818_30686120_30686296_30686412_30686579_30687879_30687993_30690735_30690829_30690925_30691014_30691151
ENSMUSG00000044320.15_4	chr2	-	2527	2	ISM	ENSMUSG00000044320.15	ENSMUST00000133380.8	774	5	4249	-614	1606	-2	3prime_fragment	FALSE	canonical	3	34	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACTCTAGGTGCCTGAT	NA	False	NA	NA	False	AGTAAA	-1	NA	30689407	30685579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_30686579_30687879
ENSMUSG00000044320.15_6	chr2	-	1410	7	FSM	ENSMUSG00000044320.15	ENSMUST00000050003.9	1672	7	-8	270	-8	2	multi-exon	FALSE	canonical	3	15	junction_6	6.6248689714506	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCCACTCTAGGTGCCT	NA	False	NA	NA	False	AATAAA	-44	NA	30691727	30685582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30685818_30686156_30686296_30686412_30686579_30687879_30687993_30690735_30690829_30690925_30691014_30691151
ENSMUSG00000044320.15_8	chr2	-	1666	5	NIC	ENSMUSG00000044320.15	novel	1672	7	NA	NA	189	-1	intron_retention	FALSE	canonical	3	15	junction_4	6.81909084849293	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAAGCCACTCTAGGTG	NA	False	NA	NA	False	AATAAA	-41	NA	30691530	30685585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30686579_30687879_30687993_30690735_30690829_30690925_30691014_30691151
ENSMUSG00000044328.14_0	chr11	-	1376	7	FSM	ENSMUSG00000044328.14	ENSMUST00000060417.11	1463	7	78	9	78	-9	multi-exon	FALSE	canonical	3	152	junction_1	13.984117975602	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCGGAGTCGTTGGGAG	NA	False	NA	-8	True	ATTAAA	-12	NA	77404118	77398933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722_77403792_77403985
ENSMUSG00000044328.14_1	chr11	-	1456	6	NIC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	78	-8	intron_retention	FALSE	canonical	3	179	junction_5	7.1386273190299	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCGGAGTCGTTGGGAGA	NA	False	NA	-7	True	ATTAAA	-13	NA	77404118	77398932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722_77403792_77403985
ENSMUSG00000044328.14_12	chr11	-	1578	6	NIC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	77	-10	intron_retention	FALSE	canonical	3	152	junction_1	15.3179633110933	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTCGGAGTCGTTGGGA	NA	False	NA	-9	True	ATTAAA	-11	NA	77404119	77398934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403792_77403985
ENSMUSG00000044328.14_2	chr11	-	1659	5	NIC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	77	-8	intron_retention	FALSE	canonical	3	179	junction_4	7.43303437365925	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCGGAGTCGTTGGGAGA	NA	False	NA	-7	True	ATTAAA	-13	NA	77404119	77398932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_77399818_77399901_77400100_77400423_77400553_77403478_77403792_77403985
ENSMUSG00000044328.14_6	chr11	-	1507	6	NNC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	79	-10	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_5	63.3782297007419	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTCGGAGTCGTTGGGA	NA	False	NA	-9	True	ATTAAA	-11	NA	77404117	77398934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403723_77403985
ENSMUSG00000044330.9_0	chr3	+	408	1	FSM	ENSMUSG00000044330.9	ENSMUST00000054148.9	288	1	-29	-91	-29	91	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGACAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-15	NA	85823060	85823468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_85823100_85823500
ENSMUSG00000044337.6_0	chr1	+	2013	2	FSM	ENSMUSG00000044337.6	ENSMUST00000065587.5	3065	2	21	1031	-5	-1031	multi-exon	FALSE	canonical	3	47	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTCATGTGTGCTTTG	NA	False	NA	6	True	AATAAA	-14	NA	90131722	90143442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_90131810_90141516
ENSMUSG00000044337.6_1	chr1	+	884	1	ISM	ENSMUSG00000044337.6	ENSMUST00000065587.5	3065	2	10857	1031	10831	-1031	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTCATGTGTGCTTTG	NA	False	NA	6	True	AATAAA	-14	NA	90142558	90143442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_90142600_90143400
ENSMUSG00000044339.13_1	chr5	-	891	4	FSM	ENSMUSG00000044339.13	ENSMUST00000112279.2	899	4	11	-3	11	3	multi-exon	FALSE	canonical	3	267	junction_3	133.312498372141	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTATTTGGGGGGGGGTG	7989	False	NA	-8	True	AATAAA	-16	NA	114266268	114261992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114266143
ENSMUSG00000044339.13_12	chr5	-	2962	2	ISM	ENSMUSG00000044339.13	ENSMUST00000053657.13	1073	4	3	9	3	0	intron_retention	FALSE	canonical	3	557	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTGTATTTGGGGGGGG	8023	False	NA	-11	True	AATAAA	-13	NA	114266234	114261995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_114262316_114263592
ENSMUSG00000044339.13_2	chr5	-	657	3	ISM	ENSMUSG00000044339.13	ENSMUST00000053657.13	1073	4	513	9	513	0	3prime_fragment	FALSE	canonical	3	542	junction_2	7.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTGTATTTGGGGGGGG	8533	False	NA	-11	True	AATAAA	-13	NA	114265724	114261995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_114262316_114263592_114263792_114265586
ENSMUSG00000044339.13_3	chr5	-	1058	4	NNC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-2525	-2	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_3	211.98480029369	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGGGGGGGGGTGTGTG	5453	False	NA	-4	True	AATAAA	-20	NA	114268804	114261988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_114262316_114263592_114263792_114265586_114265831_114268516
ENSMUSG00000044339.13_4	chr5	-	1015	4	NIC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	11	-4	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	238.844905511692	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATTTGGGGGGGGGTGTG	7989	False	NA	-6	True	AATAAA	-18	NA	114266268	114261990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_114262316_114263592_114263792_114265586_114265831_114266021
ENSMUSG00000044340.8_0	chr1	+	6191	17	FSM	ENSMUSG00000044340.8	ENSMUST00000061047.7	6226	17	23	12	23	-12	multi-exon	FALSE	canonical	3	23	junction_9	5.5589876551401	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTACTGAATCTATCTG	NA	False	NA	11	True	AATAAA	-11	NA	106099504	106321968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_106101178_106209092_106209290_106214720_106214847_106246578_106246746_106266466_106266614_106267169_106267401_106271106_106271310_106272589_106272651_106274814_106274911_106278261_106278418_106291970_106292172_106296743_106296907_106303890_106304022_106308047_106308153_106314056_106314252_106317403_106317633_106319858
ENSMUSG00000044340.8_10	chr1	+	2321	2	ISM	ENSMUSG00000044340.8	ENSMUST00000061047.7	6226	17	217946	6	72460	-6	3prime_fragment	FALSE	canonical	3	42	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAATCTATCTGCTTTTG	199	False	NA	17	True	AATAAA	-17	NA	106317427	106321974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_106317633_106319858
ENSMUSG00000044340.8_11	chr1	+	1368	1	ISM	ENSMUSG00000044340.8	ENSMUST00000061047.7	6226	17	221119	12	75633	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTACTGAATCTATCTG	1897	False	NA	11	True	AATAAA	-11	NA	106320600	106321968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_106320600_106322000
ENSMUSG00000044340.8_12	chr1	+	4321	15	ISM	ENSMUSG00000044340.8	ENSMUST00000061047.7	6226	17	115239	12	5566	-12	3prime_fragment	FALSE	canonical	3	23	junction_7	5.91435472699556	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTACTGAATCTATCTG	289	False	NA	11	True	AATAAA	-11	NA	106214720	106321968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_106214847_106246578_106246746_106266466_106266614_106267169_106267401_106271106_106271310_106272589_106272651_106274814_106274911_106278261_106278418_106291970_106292172_106296743_106296907_106303890_106304022_106308047_106308153_106314056_106314252_106317403_106317633_106319858
ENSMUSG00000044340.8_14	chr1	+	2935	6	ISM	ENSMUSG00000044340.8	ENSMUST00000061047.7	6226	17	197260	12	51774	-12	3prime_fragment	FALSE	canonical	3	26	junction_3	5.84465567848098	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTACTGAATCTATCTG	NA	False	NA	11	True	AATAAA	-11	NA	106296741	106321968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_106296907_106303890_106304022_106308047_106308153_106314056_106314252_106317403_106317633_106319858
ENSMUSG00000044340.8_2	chr1	+	4927	10	ISM	ENSMUSG00000044340.8	ENSMUST00000061047.7	6226	17	-60	41776	-60	33459	5prime_fragment	TRUE	canonical	3	23	junction_9	5.41146473861596	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTGTAGATGGATGTGA	NA	False	NA	NA	False	AATAAA	-35	NA	106099421	106280204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_106101178_106209092_106209290_106214720_106214847_106246578_106246746_106266466_106266614_106267169_106267401_106271106_106271310_106272589_106272651_106274814_106274911_106278261
ENSMUSG00000044340.8_9	chr1	+	2480	3	ISM	ENSMUSG00000044340.8	ENSMUST00000061047.7	6226	17	214634	7	69148	-7	3prime_fragment	FALSE	canonical	3	41	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGAATCTATCTGCTTTT	NA	False	NA	16	True	AATAAA	-16	NA	106314115	106321973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_106314252_106317403_106317633_106319858
ENSMUSG00000044345.10_0	chr19	+	3041	2	FSM	ENSMUSG00000044345.10	ENSMUST00000061111.10	3066	2	19	6	19	-6	multi-exon	FALSE	canonical	3	88	junction_1	0	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTGTGTTTGGGTCTCAC	NA	False	NA	23	True	AATAAA	-15	NA	42135857	42140136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_42137999_42139236
ENSMUSG00000044345.10_1	chr19	+	4258	1	FSM	ENSMUSG00000044345.10	ENSMUST00000184186.2	3755	1	-268	-235	40	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTGTGTTTGGGTCTCAC	NA	False	NA	23	True	AATAAA	-15	NA	42135878	42140136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_42135900_42140100
ENSMUSG00000044348.15_1	chrX	-	3179	7	NNC	ENSMUSG00000044348.15	novel	1737	7	NA	NA	3	-266	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	15.8394724940223	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGTTGTACTAAGTATCT	NA	False	NA	NA	False	NA	NA	NA	135938754	135902069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930857_135933099_135933250_135938678
ENSMUSG00000044348.15_13	chrX	-	1708	7	FSM	ENSMUSG00000044348.15	ENSMUST00000125747.8	1737	7	27	2	3	-1	multi-exon	FALSE	canonical	0	0	junction_6	13.5359603361646	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGAGAGATTATCCCTAG	NA	False	NA	NA	False	NA	NA	NA	135938754	135903532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930849_135933099_135933250_135938678
ENSMUSG00000044348.15_16	chrX	-	7554	5	NIC	ENSMUSG00000044348.15	novel	1737	7	NA	NA	3	-5	intron_retention	FALSE	canonical	0	0	junction_4	15.5944701737507	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAGAATGTGAGAGTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	135938754	135901808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135933250_135938678
ENSMUSG00000044348.15_3	chrX	-	3145	6	NIC	ENSMUSG00000044348.15	novel	1740	7	NA	NA	8	-268	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	11.7813411800185	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGGTTGTACTAAGTAT	NA	False	NA	NA	False	NA	NA	NA	135939040	135902071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135933099_135933250_135938914
ENSMUSG00000044348.15_4	chrX	-	3228	7	NNC	ENSMUSG00000044348.15	novel	1740	7	NA	NA	7	-268	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	13.0724477007517	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGGTTGTACTAAGTAT	NA	False	NA	NA	False	NA	NA	NA	135939041	135902071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930857_135933099_135933250_135938914
ENSMUSG00000044348.15_5	chrX	-	7581	5	NIC	ENSMUSG00000044348.15	novel	1740	7	NA	NA	4	-5	intron_retention	FALSE	canonical	3	20	junction_4	7.79021822544144	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAGAATGTGAGAGTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	135939017	135901808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135933250_135938914
ENSMUSG00000044348.15_7	chrX	-	2239	1	ISM	ENSMUSG00000044348.15	ENSMUST00000154484.8	4094	4	26781	42	-10209	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAGAATGTGAGAGTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	135904047	135901808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_135901800_135904000
ENSMUSG00000044349.17_0	chr2	+	2282	7	NIC	ENSMUSG00000044349.17	novel	1646	7	NA	NA	6	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	7.98783797754784	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTGCCTTCGGTCACA	NA	False	NA	17	True	NA	NA	NA	158217563	158228061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_158217809_158218000_158218247_158218913_158218993_158222690_158222772_158222858_158222961_158224423_158225084_158227192
ENSMUSG00000044349.17_1	chr2	+	3733	6	NIC	ENSMUSG00000044349.17	novel	1646	7	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	5	junction_4	7.30479294709987	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCCTTCGGTCACATG	NA	False	NA	19	True	NA	NA	NA	158217577	158228063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_158217809_158218000_158218247_158218913_158218993_158222690_158222772_158222858_158225084_158227192
ENSMUSG00000044349.17_2	chr2	+	5841	5	FSM	ENSMUSG00000044349.17	ENSMUST00000109488.8	5864	5	21	2	-2	-2	multi-exon	FALSE	canonical	3	5	junction_4	1.92028643696715	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCCTTCGGTCACATG	NA	False	NA	19	True	NA	NA	NA	158217578	158228063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_158217809_158218000_158218247_158218913_158218993_158222690_158222772_158222858
ENSMUSG00000044349.17_4	chr2	+	172	1	ISM	ENSMUSG00000044349.17	ENSMUST00000137320.2	3156	2	1421	1755	1374	101	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACAAAAAAAGAAAAGATGG	NA	False	NA	NA	False	NA	NA	NA	158219055	158219227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_158219100_158219200
ENSMUSG00000044349.17_6	chr2	+	133	1	ISM	ENSMUSG00000044349.17	ENSMUST00000109488.8	5864	5	5807	4568	5683	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAACAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	158223364	158223497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_158223400_158223500
ENSMUSG00000044349.17_7	chr2	+	2014	1	ISM	ENSMUSG00000044349.17	ENSMUST00000109488.8	5864	5	8492	2	8368	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCCTTCGGTCACATG	NA	False	NA	19	True	NA	NA	NA	158226049	158228063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_158226000_158228100
ENSMUSG00000044350.15_0	chr14	-	430	1	ISM	ENSMUSG00000044350.15	ENSMUST00000062789.15	2444	8	12011	1	11451	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGTTATCCATTCCTT	NA	False	NA	0	True	NA	NA	NA	77262070	77261640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_77261600_77262100
ENSMUSG00000044350.15_1	chr14	-	2269	7	NIC	ENSMUSG00000044350.15	novel	2444	8	NA	NA	-7	-3	combination_of_known_splicesites	FALSE	canonical	3	14	junction_6	20.3258182833776	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTTTGTTATCCATTCC	NA	False	NA	-2	True	NA	NA	NA	77274088	77261642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_77262415_77266967_77267129_77268176_77268403_77270625_77270792_77271444_77271624_77272232_77272846_77273936
ENSMUSG00000044350.15_12	chr14	-	1718	3	NIC	ENSMUSG00000044350.15	novel	2391	5	NA	NA	24	962	intron_retention	FALSE	canonical	3	38	junction_2	17	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGGTCTTGTTCTCAGT	NA	False	NA	NA	False	AATAAA	-19	NA	77274057	77271427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_77272846_77273251_77273431_77273936
ENSMUSG00000044350.15_2	chr14	-	2436	8	FSM	ENSMUSG00000044350.15	ENSMUST00000062789.15	2444	8	1	7	1	-7	multi-exon	FALSE	canonical	3	38	junction_3	13.9737362978714	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCATTTTTGTTATCCA	NA	False	NA	-6	True	NA	NA	NA	77274080	77261646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_77262415_77266967_77267129_77268176_77268403_77270625_77270792_77271444_77271624_77272232_77272846_77273251_77273431_77273936
ENSMUSG00000044352.7_0	chr11	-	3588	1	FSM	ENSMUSG00000044352.7	ENSMUST00000104955.4	3702	1	107	7	107	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCGGCTTGTGTGGAGT	NA	False	NA	NA	False	AATAAA	-14	NA	53370994	53367406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_53367400_53371000
ENSMUSG00000044362.9_0	chr7	+	2134	1	FSM	ENSMUSG00000044362.9	ENSMUST00000061391.9	2093	1	-48	7	-48	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATAATTTATTTTCTTAT	4060	False	NA	NA	False	AGTAAA	-21	NA	90075736	90077870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_90075700_90077900
ENSMUSG00000044364.6_0	chr2	+	1269	2	FSM	ENSMUSG00000044364.6	ENSMUST00000060196.3	1435	2	162	4	-141	-4	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGATGAGGCTACTTGGC	107	False	NA	NA	False	NA	NA	NA	151544089	151549226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_151544366_151548233
ENSMUSG00000044367.8_2	chr11	-	2564	4	FSM	ENSMUSG00000044367.8	ENSMUST00000060010.3	2531	4	-35	2	-35	-2	multi-exon	FALSE	canonical	3	11	junction_2	1.24721912892465	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTCTGATGGTCAAGCTC	NA	False	NA	NA	False	NA	NA	NA	70111855	70107616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70108748_70109418_70110157_70111020_70111165_70111304
ENSMUSG00000044367.8_7	chr11	-	3224	3	NIC	ENSMUSG00000044367.8	novel	2531	4	NA	NA	-23	-1	intron_retention	FALSE	canonical	3	11	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCTGATGGTCAAGCTCA	NA	False	NA	NA	False	NA	NA	NA	70111843	70107615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_70110157_70111020_70111165_70111304
ENSMUSG00000044387.6_0	chr19	+	445	2	FSM	ENSMUSG00000044387.6	ENSMUST00000142712.2	414	2	-42	11	-42	-11	multi-exon	FALSE	canonical	3	58	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	23112221	23113070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_23112319_23112722
ENSMUSG00000044390.6_0	chr19	-	2107	2	FSM	ENSMUSG00000044390.6	ENSMUST00000236767.2	2155	2	44	4	2	-4	multi-exon	FALSE	canonical	2	7	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGTCAGGATGTGGAGG	8068	False	NA	NA	False	AATAAA	-11	NA	5944133	5941174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5943146_5943997
ENSMUSG00000044390.6_2	chr19	-	2113	2	FSM	ENSMUSG00000044390.6	ENSMUST00000055911.6	2115	2	-7	9	-7	-4	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGTCAGGATGTGGAGG	8059	False	NA	NA	False	AATAAA	-11	NA	5944142	5941174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5943143_5943997
ENSMUSG00000044393.16_0	chr18	+	5661	16	NNC	ENSMUSG00000044393.16	novel	5766	15	NA	NA	-34	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	43.6	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACCTCTCTCCATGT	NA	False	NA	8	True	AATAAA	-17	NA	20691177	20737576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_20691402_20706545_20706582_20707996_20708132_20712096_20712259_20712390_20712536_20713568_20713736_20715764_20715903_20715993_20716180_20723004_20723271_20724890_20725034_20725328_20725557_20727120_20727349_20729016_20729139_20731395_20731726_20734369_20736600_20736655
ENSMUSG00000044393.16_1	chr18	+	5709	15	FSM	ENSMUSG00000044393.16	ENSMUST00000059787.15	5766	15	55	2	-26	-2	multi-exon	FALSE	canonical	3	147	junction_4	15.0483913303932	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACCTCTCTCCATGT	NA	False	NA	8	True	AATAAA	-17	NA	20691185	20737576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_20691402_20706545_20706582_20707996_20708132_20712096_20712259_20712390_20712536_20713568_20713736_20715764_20715903_20715993_20716180_20723004_20723271_20724890_20725034_20725328_20725557_20727120_20727349_20729016_20729139_20731395_20731726_20734369
ENSMUSG00000044393.16_21	chr18	+	4637	8	ISM	ENSMUSG00000044393.16	ENSMUST00000059787.15	5766	15	24938	0	24766	0	3prime_fragment	FALSE	canonical	3	147	junction_1	8.2015429110899	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAACCTCTCTCCATGTCT	NA	False	NA	10	True	AATAAA	-19	NA	20716068	20737578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_20716180_20723004_20723271_20724890_20725034_20725328_20725557_20727120_20727349_20729016_20729139_20731395_20731726_20734369
ENSMUSG00000044393.16_34	chr18	+	3458	2	ISM	ENSMUSG00000044393.16	ENSMUST00000059787.15	5766	15	40344	2	40172	-2	3prime_fragment	FALSE	canonical	3	154	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACCTCTCTCCATGT	NA	False	NA	8	True	AATAAA	-17	NA	20731474	20737576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_20731726_20734369
ENSMUSG00000044393.16_35	chr18	+	2035	1	ISM	ENSMUSG00000044393.16	ENSMUST00000059787.15	5766	15	44411	2	44239	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACCTCTCTCCATGT	NA	False	NA	8	True	AATAAA	-17	NA	20735541	20737576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_20735500_20737600
ENSMUSG00000044408.8_0	chr12	-	1304	2	FSM	ENSMUSG00000044408.8	ENSMUST00000056228.8	1346	2	29	13	29	-4	multi-exon	FALSE	canonical	3	293	junction_1	0	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAATGTAGCAGTCT	NA	False	NA	NA	False	ATTAAA	-4	NA	54703329	54692189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_54693321_54703156
ENSMUSG00000044408.8_1	chr12	-	978	1	FSM	ENSMUSG00000106344.3	ENSMUST00000197752.3	80	1	-370	-528	-370	528	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAATGTAGCAGTCT	8562	False	NA	NA	False	ATTAAA	-4	NA	54693167	54692189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_54692200_54693200
ENSMUSG00000044424.5_0	chr19	+	184	1	FSM	ENSMUSG00000044424.5	ENSMUST00000104916.4	571	1	415	-28	415	28	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAGTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-10	NA	23597527	23597711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_23597500_23597700
ENSMUSG00000044433.17_12	chr8	+	4080	18	FSM	ENSMUSG00000044433.17	ENSMUST00000207077.2	3832	18	-131	-117	-113	2	multi-exon	FALSE	canonical	3	30	junction_5	41.5373263579742	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACACGGTGTCTCCTCC	6541	False	NA	23	True	AATAAA	-19	NA	3637680	3659045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3650357_3650406_3650675_3650815_3651965_3652106_3652185_3652280_3652370_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
ENSMUSG00000044433.17_32	chr8	+	3572	15	ISM	ENSMUSG00000044433.17	ENSMUST00000057028.15	4450	17	11321	29	-1934	-2	3prime_fragment	FALSE	canonical	3	66	junction_5	31.8741946676977	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACACGGTGTCTCCTCCC	7884	False	NA	24	True	AATAAA	-20	NA	3648613	3659046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_3648809_3648892_3648989_3650675_3650815_3651965_3652106_3652185_3652280_3652370_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
ENSMUSG00000044433.17_34	chr8	+	3580	15	ISM	ENSMUSG00000044433.17	ENSMUST00000171962.3	3925	17	10814	3	-1940	2	3prime_fragment	FALSE	canonical	3	47	junction_5	34.5829378716837	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACACGGTGTCTCCTCC	7878	False	NA	23	True	AATAAA	-19	NA	3648607	3659045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_3648809_3648892_3648989_3650675_3650815_3651965_3652106_3652185_3652280_3652367_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
ENSMUSG00000044433.17_42	chr8	+	2145	7	ISM	ENSMUSG00000044433.17	ENSMUST00000208064.2	3241	10	2082	2	2082	0	3prime_fragment	FALSE	canonical	3	122	junction_1	19.073687518557	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGAGACACGGTGTCTC	5530	False	NA	19	True	AATAAA	-15	NA	3654164	3659041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
ENSMUSG00000044433.17_5	chr8	+	4037	17	FSM	ENSMUSG00000044433.17	ENSMUST00000057028.15	4450	17	383	30	-118	2	multi-exon	FALSE	canonical	3	66	junction_7	31.8251448347058	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACACGGTGTCTCCTCC	6536	False	NA	23	True	AATAAA	-19	NA	3637675	3659045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3650675_3650815_3651965_3652106_3652185_3652280_3652370_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
ENSMUSG00000044433.17_6	chr8	+	4035	17	FSM	ENSMUSG00000044433.17	ENSMUST00000171962.3	3925	17	-118	8	-118	-1	multi-exon	FALSE	canonical	3	47	junction_7	34.0677174903163	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTGAGACACGGTGTCT	6536	False	NA	18	True	AATAAA	-14	NA	3637675	3659040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3650675_3650815_3651965_3652106_3652185_3652280_3652367_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
ENSMUSG00000044433.17_7	chr8	+	4117	18	NIC	ENSMUSG00000044433.17	novel	3832	18	NA	NA	-125	-8	combination_of_known_junctions	TRUE	canonical	3	30	junction_5	42.9626859907903	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTGACCAAGTTTACGT	6529	False	NA	45	True	AATAAA	-41	NA	3637668	3659067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3650357_3650406_3650675_3650815_3651965_3652106_3652185_3652280_3652367_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
ENSMUSG00000044442.12_0	chr16	+	1825	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	51	8	-7	-8	multi-exon	FALSE	canonical	3	84	junction_5	18.2931681236466	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAGAACTTCAGCCTT	NA	False	NA	-7	True	AATAAA	-18	NA	87151123	87165622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
ENSMUSG00000044442.12_1	chr16	+	1683	5	FSM	ENSMUSG00000044442.12	ENSMUST00000118310.8	1700	5	9	8	-7	-8	multi-exon	FALSE	canonical	3	22	junction_4	45.8768732587564	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAGAACTTCAGCCTT	NA	False	NA	-7	True	AATAAA	-18	NA	87151123	87165622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87164352
ENSMUSG00000044447.6_0	chr14	-	2548	1	ISM	ENSMUSG00000044447.6	ENSMUST00000039135.6	9988	52	178750	0	10277	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTTTAGCTGGTT	NA	False	NA	-12	True	ATTAAA	-24	NA	67992131	67989583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_67989600_67992100
ENSMUSG00000044447.6_1	chr14	-	1928	9	ISM	ENSMUSG00000044447.6	ENSMUST00000039135.6	9988	52	163151	3485	-5322	-1	3prime_fragment	FALSE	canonical	3	80	junction_2	10.4731800328267	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATAGAGTGAATTTTATT	NA	False	NA	0	True	NA	NA	NA	68007730	67993068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_67993972_67994556_67994658_67995385_67995525_67996479_67996649_68000608_68000776_68002042_68002181_68003305_68003390_68004701_68004879_68007680
ENSMUSG00000044447.6_2	chr14	-	6632	52	NNC	ENSMUSG00000044447.6	novel	9988	52	NA	NA	-120	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_29	15.418299268273	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATAGAGTGAATTTTATT	NA	False	NA	0	True	NA	NA	NA	68171011	67993068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_67993972_67994556_67994658_67995385_67995525_67996479_67996649_68000608_68000776_68002042_68002181_68003305_68003390_68004701_68004879_68007680_68007768_68008456_68008542_68009137_68009220_68010500_68010643_68011941_68012047_68013694_68013785_68015021_68015142_68017727_68017819_68018448_68018490_68019442_68019603_68022248_68022335_68023721_68023877_68024273_68024333_68027668_68027770_68029669_68029749_68031384_68031480_68033418_68033518_68037791_68037888_68040431_68040569_68043178_68043286_68043871_68043943_68044711_68044823_68046453_68046589_68049590_68049692_68051376_68051467_68051724_68051823_68054961_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994_68060120_68062048_68062175_68065809_68065953_68069666_68069740_68073762_68073893_68076995_68077078_68078458_68078617_68080213_68080350_68083437_68083587_68095351_68095449_68097347_68097404_68103480_68103522_68118647_68118732_68170740
ENSMUSG00000044447.6_24	chr14	-	5034	39	ISM	ENSMUSG00000044447.6	ENSMUST00000039135.6	9988	52	110815	3485	-57658	-1	3prime_fragment	FALSE	canonical	3	67	junction_21	9.53561627999655	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATAGAGTGAATTTTATT	NA	False	NA	0	True	NA	NA	NA	68060066	67993068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_67993972_67994556_67994658_67995385_67995525_67996479_67996649_68000608_68000776_68002042_68002181_68003305_68003390_68004701_68004879_68007680_68007768_68008456_68008542_68009137_68009220_68010500_68010643_68011941_68012047_68013694_68013785_68015021_68015142_68017727_68017819_68018448_68018490_68019442_68019603_68022248_68022335_68023721_68023877_68024273_68024333_68027668_68027770_68029669_68029749_68031384_68031480_68033418_68033518_68037791_68037888_68040431_68040569_68043178_68043286_68043871_68043943_68044710_68044823_68046453_68046589_68049590_68049692_68051376_68051467_68051724_68051823_68054961_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994
ENSMUSG00000044447.6_5	chr14	-	6634	52	FSM	ENSMUSG00000044447.6	ENSMUST00000039135.6	9988	52	-132	3486	-122	-2	multi-exon	FALSE	canonical	3	67	junction_21	9.78869405661972	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCATAGAGTGAATTTTAT	NA	False	NA	-1	True	NA	NA	NA	68171013	67993069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_67993972_67994556_67994658_67995385_67995525_67996479_67996649_68000608_68000776_68002042_68002181_68003305_68003390_68004701_68004879_68007680_68007768_68008456_68008542_68009137_68009220_68010500_68010643_68011941_68012047_68013694_68013785_68015021_68015142_68017727_68017819_68018448_68018490_68019442_68019603_68022248_68022335_68023721_68023877_68024273_68024333_68027668_68027770_68029669_68029749_68031384_68031480_68033418_68033518_68037791_68037888_68040431_68040569_68043178_68043286_68043871_68043943_68044710_68044823_68046453_68046589_68049590_68049692_68051376_68051467_68051724_68051823_68054961_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994_68060120_68062048_68062175_68065809_68065953_68069666_68069740_68073762_68073893_68076995_68077078_68078458_68078617_68080213_68080350_68083437_68083587_68095351_68095449_68097347_68097404_68103480_68103522_68118647_68118732_68170740
ENSMUSG00000044452.11_12	chr7	-	6576	6	NIC	ENSMUSG00000044452.11	novel	6693	7	NA	NA	-8	-12	combination_of_known_splicesites	FALSE	canonical	2	4	junction_5	25.6093732840146	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAAAAACCACTTGTTTC	NA	False	NA	NA	False	AATAAA	-9	NA	35502400	35471779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35492947_35495044_35502258
ENSMUSG00000044452.11_2	chr7	-	6680	7	FSM	ENSMUSG00000044452.11	ENSMUST00000061586.11	6693	7	1	12	1	-12	multi-exon	FALSE	canonical	3	57	junction_5	5.55777733351102	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAAAAACCACTTGTTTC	NA	False	NA	NA	False	AATAAA	-9	NA	35502413	35471779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35492947_35495044_35500862_35500954_35502258
ENSMUSG00000044452.11_4	chr7	-	2808	1	ISM	ENSMUSG00000044452.11	ENSMUST00000061586.11	6693	7	27830	9	4009	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACCACTTGTTTCTAA	NA	False	NA	NA	False	AATAAA	-12	NA	35474584	35471776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_35471800_35474600
ENSMUSG00000044452.11_5	chr7	-	4096	2	ISM	ENSMUSG00000044452.11	ENSMUST00000061586.11	6693	7	26431	10	2610	-10	3prime_fragment	FALSE	canonical	3	60	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAACCACTTGTTTCTA	NA	False	NA	NA	False	AATAAA	-11	NA	35475983	35471777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_35475753_35475862
ENSMUSG00000044452.11_6	chr7	-	4560	6	FSM	ENSMUSG00000044452.11	ENSMUST00000187282.3	944	6	3	-3619	3	-12	multi-exon	FALSE	canonical	3	8	junction_4	23.3957261054236	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAAAAACCACTTGTTTC	NA	False	NA	NA	False	AATAAA	-9	NA	35502389	35471779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35500862_35500954_35502258
ENSMUSG00000044452.11_7	chr7	-	5093	5	ISM	ENSMUSG00000044452.11	ENSMUST00000061586.11	6693	7	8712	12	-233	-12	3prime_fragment	FALSE	canonical	3	60	junction_1	4.43705983732471	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAAAAACCACTTGTTTC	NA	False	NA	NA	False	AATAAA	-9	NA	35493702	35471779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35492947
ENSMUSG00000044456.17_0	chr12	+	3886	10	FSM	ENSMUSG00000044456.17	ENSMUST00000056950.14	3892	10	-4	10	-4	-10	multi-exon	FALSE	canonical	0	0	junction_8	2.36225462505214	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCTAACTTCCCTGAAG	NA	False	NA	NA	False	AATAAA	-12	NA	102249302	102357104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_102249586_102279233_102279442_102292053_102292172_102317140_102317214_102324963_102325056_102334622_102336108_102339828_102340138_102348811_102348944_102353812_102353977_102356082
ENSMUSG00000044461.7_0	chr14	+	3110	2	FSM	ENSMUSG00000044461.7	ENSMUST00000053949.7	3119	2	6	3	6	-3	multi-exon	TRUE	canonical	3	42	junction_1	0	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTCGGGGAATGCTT	NA	False	NA	2	True	AATAAA	-14	NA	59862762	59869106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_59863850_59867083
ENSMUSG00000044461.7_1	chr14	+	4738	1	NIC	ENSMUSG00000044461.7	novel	3119	2	NA	NA	-268	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTCGGGGAATGCTTA	NA	False	NA	3	True	AATAAA	-15	NA	59864369	59869107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_59864400_59869100
ENSMUSG00000044465.20_10	chr7	-	3405	12	FSM	ENSMUSG00000044465.20	ENSMUST00000179474.9	10853	12	48	7400	2	0	multi-exon	TRUE	canonical	3	88	junction_4	97.1164419950871	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTGCTCATTCTTCTT	NA	False	NA	-11	True	TATAAA	-13	NA	105049213	105027817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
ENSMUSG00000044465.20_13	chr7	-	3496	13	FSM	ENSMUSG00000044465.20	ENSMUST00000122327.7	3521	13	26	-1	2	0	multi-exon	FALSE	canonical	3	82	junction_12	109.388038905337	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTGCTCATTCTTCTT	NA	False	NA	-11	True	TATAAA	-13	NA	105049213	105027817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105040783_105040875_105049090
ENSMUSG00000044465.20_14	chr7	-	3538	13	NIC	ENSMUSG00000044465.20	novel	3521	13	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_12	109.915118765952	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTGCTCATTCTTCTT	NA	False	NA	-11	True	TATAAA	-13	NA	105049213	105027817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105040783_105040875_105049090
ENSMUSG00000044465.20_2	chr7	-	3899	1	ISM	ENSMUSG00000044465.20	ENSMUST00000179474.9	10853	12	24943	2	6520	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGGTTGTTCACATCTC	NA	False	NA	-2	True	AATAAA	-14	NA	105024318	105020419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_105020400_105024300
ENSMUSG00000044465.20_28	chr7	-	2548	3	FSM	ENSMUSG00000044465.20	ENSMUST00000142559.2	800	3	-1283	-465	856	0	multi-exon	TRUE	canonical	3	205	junction_2	1.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTGCTCATTCTTCTT	NA	False	NA	-11	True	TATAAA	-13	NA	105032471	105027817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105028337_105030286_105030450_105030605
ENSMUSG00000044465.20_8	chr7	-	3446	12	FSM	ENSMUSG00000044465.20	ENSMUST00000048079.14	3443	12	-4	1	2	0	multi-exon	FALSE	canonical	3	83	junction_4	97.8877751760945	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGTGCTCATTCTTCT	NA	False	NA	-12	True	TATAAA	-12	NA	105049213	105027818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
ENSMUSG00000044468.15_0	chr3	-	2027	2	FSM	ENSMUSG00000044468.15	ENSMUST00000061455.9	5640	2	127	3486	1	-3486	multi-exon	FALSE	canonical	3	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATAACGTTAAAGTAGAA	NA	False	NA	NA	False	AATAAA	-7	NA	100396513	100378858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_100380782_100396409
ENSMUSG00000044469.9_0	chr17	+	1403	2	FSM	ENSMUSG00000044469.9	ENSMUST00000077788.7	2379	2	35	941	35	-941	multi-exon	FALSE	canonical	2	6	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTAAGAATGCTTGTCACC	448	False	NA	NA	False	AATAAA	-24	NA	56469511	56480014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56469607_56478706
ENSMUSG00000044475.15_0	chr10	+	1442	11	FSM	ENSMUSG00000044475.15	ENSMUST00000050516.14	1450	11	7	1	7	-1	multi-exon	FALSE	canonical	3	221	junction_7	12.5797456254091	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGCTGTGGTCTGTGC	NA	False	NA	25	True	AATAAA	-15	NA	59838667	59935807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUSG00000044475.15_2	chr10	+	1356	10	NIC	ENSMUSG00000044475.15	novel	1450	11	NA	NA	-5	-1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	69.3265666213622	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGCTGTGGTCTGTGC	NA	False	NA	25	True	AATAAA	-15	NA	59838655	59935807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_59838730_59840616_59840750_59843548_59843649_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUSG00000044475.15_5	chr10	+	1534	11	FSM	ENSMUSG00000044475.15	ENSMUST00000164083.4	1473	11	-66	5	-66	-3	multi-exon	FALSE	canonical	3	28	junction_1	64.3808201252516	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTGTGCTGTGGTCTGT	NA	False	NA	23	True	AATAAA	-13	NA	59839082	59935805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_59839239_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUSG00000044475.15_7	chr10	+	1370	10	ISM	ENSMUSG00000044475.15	ENSMUST00000164083.4	1473	11	1474	7	1474	-5	3prime_fragment	FALSE	canonical	3	221	junction_6	12.3827837473378	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGGCTGTGCTGTGGTCT	NA	False	NA	21	True	AATAAA	-11	NA	59840622	59935803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUSG00000044477.13_0	chr17	+	2573	5	FSM	ENSMUSG00000044477.13	ENSMUST00000057897.10	2640	5	2	65	2	-18	multi-exon	FALSE	canonical	2	8	junction_3	41.3037528561268	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATCTTGTAACTTTA	NA	False	NA	-60	True	NA	NA	NA	30224039	30428929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30411536_30411705_30426991
ENSMUSG00000044477.13_1	chr17	+	1081	6	FSM	ENSMUSG00000044477.13	ENSMUST00000226208.3	3039	6	352	1606	21	-3	multi-exon	FALSE	canonical	3	90	junction_1	13.1301180497359	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCATGGCTAGTGGATTT	NA	False	NA	19	True	ATTAAA	-20	NA	30224058	30427390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30372276_30372343_30411536_30411705_30426991
ENSMUSG00000044477.13_10	chr17	+	1687	1	ISM	ENSMUSG00000044477.13	ENSMUST00000226208.3	3039	6	203600	3	10757	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTGGATTGTCTGTGTT	NA	False	NA	4	True	ATTAAA	-13	NA	30427306	30428993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_30427300_30429000
ENSMUSG00000044477.13_3	chr17	+	925	4	FSM	ENSMUSG00000044477.13	ENSMUST00000226308.2	2565	4	76	1564	-27	-10	multi-exon	FALSE	canonical	2	8	junction_2	49.2769948578667	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTGAGCATGGCTAG	NA	False	NA	12	True	ATTAAA	-13	NA	30224100	30427383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_30224283_30354296_30354480_30411536_30411705_30426991
ENSMUSG00000044477.13_4	chr17	+	2651	5	FSM	ENSMUSG00000044477.13	ENSMUST00000226421.3	3489	5	23	815	7	-7	multi-exon	FALSE	canonical	2	11	junction_1	47.3623004086584	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGACATTTGGATTGTC	NA	False	NA	-2	True	ATTAAA	-7	NA	30224044	30428987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_30224283_30354296_30354480_30372276_30372343_30411536_30411705_30426991
ENSMUSG00000044477.13_8	chr17	+	2460	5	ISM	ENSMUSG00000044477.13	ENSMUST00000234790.2	763	6	427	-1865	427	-2	3prime_fragment	FALSE	canonical	3	100	junction_1	9.51314879522022	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTGGATTGTCTGTGT	NA	False	NA	3	True	ATTAAA	-12	NA	30279782	30428992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_30279825_30354296_30354480_30372276_30372343_30411536_30411705_30426991
ENSMUSG00000044477.13_9	chr17	+	2068	2	ISM	ENSMUSG00000044477.13	ENSMUST00000234902.2	2289	4	56465	11	-4921	-11	3prime_fragment	FALSE	canonical	3	114	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATATGGACATTTGGAT	NA	False	NA	-6	True	ATTAAA	-3	NA	30411628	30428983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_30411705_30426991
ENSMUSG00000044496.7_0	chr4	+	2733	3	FSM	ENSMUSG00000044496.7	ENSMUST00000103232.2	2731	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	503	junction_1	12.5	1103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTACTGGTCTGTGTGTGG	NA	False	NA	21	True	AATAAA	-16	NA	148025349	148031771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_148026515_148029064_148029919_148031057
ENSMUSG00000044496.7_1	chr4	+	3874	2	ISM	ENSMUSG00000044496.7	ENSMUST00000103232.2	2731	3	-4	0	-4	0	intron_retention	FALSE	canonical	3	503	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTACTGGTCTGTGTGTGG	NA	False	NA	21	True	AATAAA	-16	NA	148025347	148031771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_148026515_148029064
ENSMUSG00000044501.18_0	chr17	+	3570	4	FSM	ENSMUSG00000044501.18	ENSMUST00000088765.9	2973	4	21	-618	19	617	multi-exon	FALSE	canonical	3	11	junction_1	13.4412301024373	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAACTACCTGTATGATA	NA	False	NA	NA	False	AATATA	-20	NA	22580454	22596879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_22580689_22590971_22591070_22592623_22592751_22593768
ENSMUSG00000044501.18_1	chr17	+	4341	4	FSM	ENSMUSG00000044501.18	ENSMUST00000121315.2	2860	4	-52	-1429	15	1429	multi-exon	FALSE	canonical	3	6	junction_1	15.7973274814304	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22580450	22597691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_22580689_22591016_22591070_22592623_22592751_22593768
ENSMUSG00000044501.18_3	chr17	+	4284	3	FSM	ENSMUSG00000044501.18	ENSMUST00000149699.8	2876	3	21	-1429	19	1429	multi-exon	FALSE	canonical	2	8	junction_1	16	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22580454	22597691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_22580689_22592623_22592751_22593768
ENSMUSG00000044501.18_5	chr17	+	4596	3	ISM	ENSMUSG00000044501.18	ENSMUST00000121315.2	2860	4	8583	9	8583	-8	3prime_fragment	FALSE	canonical	3	39	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGTCACCATTCTAGTC	NA	False	NA	16	True	AATAAA	-16	NA	22589085	22596253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_22591070_22592623_22592751_22593768
ENSMUSG00000044501.18_6	chr17	+	4835	2	ISM	ENSMUSG00000044501.18	ENSMUST00000121315.2	2860	4	11336	-1429	11336	1429	3prime_fragment	FALSE	canonical	3	40	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22591838	22597691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_22592751_22593768
ENSMUSG00000044501.18_7	chr17	+	3460	1	Genic_Genomic	ENSMUSG00000044501.18	novel	NA	NA	NA	NA	13729	1429	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22594231	22597691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_+_22594200_22597700
ENSMUSG00000044502.17_0	chr11	-	2217	3	FSM	ENSMUSG00000044502.17	ENSMUST00000109415.2	799	3	-120	-1298	38	-8	multi-exon	FALSE	canonical	3	591	junction_1	17	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATAAAGTTGTTTGACGA	NA	False	NA	-37	True	AATAAA	-14	NA	31621847	31615188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_31616934_31619243_31619369_31621500
ENSMUSG00000044502.17_1	chr11	-	1353	4	FSM	ENSMUSG00000044502.17	ENSMUST00000058060.14	1394	4	35	6	35	-6	multi-exon	FALSE	canonical	3	568	junction_1	23.4141457717813	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTTGTTTGACGATC	NA	False	NA	-35	True	AATAAA	-16	NA	31621850	31615186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_31615868_31616736_31616934_31619243_31619369_31621500
ENSMUSG00000044528.6_0	chr3	+	1746	1	FSM	ENSMUSG00000044528.6	ENSMUST00000058994.6	3889	1	249	1894	249	-1894	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGATGACATGTGTGGTG	NA	False	NA	NA	False	ATTAAA	-14	NA	124114752	124116498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_124114800_124116500
ENSMUSG00000044533.16_0	chr17	+	948	6	FSM	ENSMUSG00000044533.16	ENSMUST00000170715.8	998	6	47	3	0	-2	multi-exon	FALSE	canonical	3	3280	junction_1	2855.80020309545	1475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTATGTTTTTTTTTGT	6237	False	NA	-2	True	AATAAA	-17	NA	24939083	24940897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
ENSMUSG00000044533.16_1	chr17	+	1022	5	FSM	ENSMUSG00000044533.16	ENSMUST00000054289.13	1094	5	66	6	66	-2	multi-exon	FALSE	canonical	3	8303	junction_1	1140.19655651997	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTATGTTTTTTTTTGT	6303	False	NA	-2	True	AATAAA	-17	NA	24939149	24940897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
ENSMUSG00000044548.12_0	chr12	+	3722	4	FSM	ENSMUSG00000044548.12	ENSMUST00000061273.12	3650	4	-89	17	-89	-17	multi-exon	FALSE	canonical	3	14	junction_3	6.97614984548545	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATCTTGTGCTGGCTGT	1124	False	NA	NA	False	TATAAA	-19	NA	71356568	71366864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_71357082_71359459_71359593_71360558_71360715_71363944
ENSMUSG00000044548.12_1	chr12	+	3772	4	FSM	ENSMUSG00000044548.12	ENSMUST00000150639.2	2448	4	-128	-1196	-28	-17	multi-exon	FALSE	canonical	2	11	junction_3	8.28653526310404	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATCTTGTGCTGGCTGT	1185	False	NA	NA	False	TATAAA	-19	NA	71356629	71366864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_71357082_71359459_71359593_71360558_71360715_71363833
ENSMUSG00000044548.12_2	chr12	+	2102	1	ISM	ENSMUSG00000044548.12	ENSMUST00000061273.12	3650	4	8101	21	8001	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTATAAATCTTGTGCTGG	2827	False	NA	NA	False	TATAAA	-15	NA	71364758	71366860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_71364800_71366900
ENSMUSG00000044551.14_1	chr14	-	1948	7	FSM	ENSMUSG00000044551.14	ENSMUST00000153871.2	1983	7	33	2	33	1	multi-exon	FALSE	canonical	2	3	junction_1	2.91070819942883	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGACTGTTAAATGA	NA	False	NA	NA	False	NA	NA	NA	70396918	70391855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70392726_70393298_70393403_70393609_70393726_70393864_70393968_70394107_70394249_70394627_70395104_70396780
ENSMUSG00000044551.14_3	chr14	-	1915	7	FSM	ENSMUSG00000044551.14	ENSMUST00000058240.14	1986	7	67	4	67	-1	multi-exon	FALSE	canonical	2	3	junction_1	2.76887462097269	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGCTGTGACTGTTAAAT	NA	False	NA	NA	False	NA	NA	NA	70396884	70391857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70392726_70393298_70393406_70393609_70393726_70393864_70393968_70394107_70394249_70394627_70395104_70396780
ENSMUSG00000044562.13_2	chr7	+	2391	10	ISM	ENSMUSG00000044562.13	ENSMUST00000057927.10	3202	12	1489	4	1489	-4	3prime_fragment	FALSE	canonical	3	17	junction_1	24.3026188702086	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTCACTTGTCAAGATT	855	False	NA	2	True	AATAAA	-15	NA	45278400	45288513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45278506_45279563_45279920_45281659_45282314_45284240_45284279_45284390_45284543_45284639_45284756_45285761_45286006_45286143_45286317_45287293_45287442_45288108
ENSMUSG00000044562.13_4	chr7	+	2121	9	ISM	ENSMUSG00000044562.13	ENSMUST00000057927.10	3202	12	2819	2	2819	-2	3prime_fragment	FALSE	canonical	3	20	junction_1	20.1769515784719	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCACTTGTCAAGATTTG	2185	False	NA	4	True	AATAAA	-17	NA	45279730	45288515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45279920_45281659_45282314_45284240_45284279_45284390_45284543_45284639_45284756_45285761_45286006_45286143_45286317_45287293_45287442_45288108
ENSMUSG00000044562.13_5	chr7	+	1612	8	ISM	ENSMUSG00000044562.13	ENSMUST00000057927.10	3202	12	5068	2	5068	-2	3prime_fragment	FALSE	canonical	3	61	junction_1	11.5245965886278	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCACTTGTCAAGATTTG	4434	False	NA	4	True	AATAAA	-17	NA	45281979	45288515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45282314_45284240_45284279_45284390_45284543_45284639_45284756_45285761_45286006_45286143_45286317_45287293_45287442_45288108
ENSMUSG00000044573.17_1	chr12	-	1422	6	FSM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	18	1314	0	906	multi-exon	FALSE	canonical	3	735	junction_4	354.017287713467	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCCAGTGTCTGCCTGCT	NA	False	NA	NA	False	AATACA	-11	NA	30961570	30944968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954831_30955067_30955142_30961488
ENSMUSG00000044573.17_2	chr12	-	1418	6	FSM	ENSMUSG00000044573.17	ENSMUST00000062740.15	3066	6	4	1644	4	906	multi-exon	FALSE	canonical	3	836	junction_3	311.492279198057	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCCAGTGTCTGCCTGCT	NA	False	NA	NA	False	AATACA	-11	NA	30961566	30944968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
ENSMUSG00000044576.7_2	chr5	+	2576	3	ISM	ENSMUSG00000044576.7	ENSMUST00000058045.5	3865	6	9536	3	9536	-3	3prime_fragment	FALSE	canonical	2	5	junction_1	0	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGGGCCCTGGGTGTTGGC	NA	False	NA	NA	False	AATAAA	-26	NA	30319694	30323373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_30319986_30320884_30321055_30321258
ENSMUSG00000044576.7_3	chr5	+	3680	1	NIC	ENSMUSG00000044576.7	novel	3865	6	NA	NA	9537	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGCCCTGGGTGTTGGCTG	NA	False	NA	NA	False	AATAAA	-28	NA	30319695	30323375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_30319700_30323400
ENSMUSG00000044595.11_0	chr18	-	1483	4	FSM	ENSMUSG00000044595.11	ENSMUST00000061522.8	1451	4	-33	1	-17	-1	multi-exon	TRUE	canonical	3	43	junction_2	7.76029781788188	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACATGTGTCTGCTTGGTA	NA	False	NA	-9	True	ATTAAA	-13	NA	36899284	36896726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_36897541_36898148_36898611_36898945_36899064_36899195
ENSMUSG00000044600.15_0	chr8	-	2121	5	FSM	ENSMUSG00000044600.15	ENSMUST00000167290.8	2892	5	33	738	-6	-738	multi-exon	FALSE	canonical	3	388	junction_4	37.7582772382427	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACTTACTGTGTGTGTGA	NA	False	NA	-43	True	GATAAA	-11	NA	73324899	73319769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717_73324760_73324847
ENSMUSG00000044600.15_1	chr8	-	1597	1	ISM	ENSMUSG00000044600.15	ENSMUST00000167290.8	2892	5	3567	737	3528	-737	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTACTGTGTGTGTGAA	NA	False	NA	-42	True	GATAAA	-12	NA	73321365	73319768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_73319800_73321400
ENSMUSG00000044617.9_1	chr10	+	3257	2	FSM	ENSMUSG00000044617.9	ENSMUST00000054287.9	5960	2	-2	2705	-2	-2705	multi-exon	FALSE	canonical	2	5	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAGCAGGGTGTGCATTC	NA	False	NA	NA	False	ATTAAA	-23	NA	127575404	127580513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127575532_127577383
ENSMUSG00000044617.9_2	chr10	+	524	1	ISM	ENSMUSG00000044617.9	ENSMUST00000054287.9	5960	2	7115	173	7115	-173	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTTAAGTGTTTACTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	127582521	127583045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127582500_127583000
ENSMUSG00000044617.9_5	chr10	+	2531	1	ISM	ENSMUSG00000044617.9	ENSMUST00000054287.9	5960	2	2574	2707	2574	-2707	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATAGCAGGGTGTGCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	127577980	127580511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_127578000_127580500
ENSMUSG00000044626.14_1	chr16	-	2645	10	FSM	ENSMUSG00000044626.14	ENSMUST00000060673.8	3923	10	183	1095	-29	475	multi-exon	FALSE	canonical	3	141	junction_8	25.7197623013804	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTGCCTGTTAGAGGAA	NA	False	NA	-28	True	AATACA	-12	NA	21814230	21773661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802650_21803019_21814070
ENSMUSG00000044626.14_3	chr16	-	1157	1	ISM	ENSMUSG00000044626.14	ENSMUST00000060673.8	3923	10	40024	666	20826	-666	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAACGTGAAGGAGAAA	5935	False	NA	-9	True	NA	NA	NA	21774389	21773232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_21773200_21774400
ENSMUSG00000044626.14_8	chr16	-	2542	9	ISM	ENSMUSG00000044626.14	ENSMUST00000060673.8	3923	10	11336	1097	-7574	473	3prime_fragment	FALSE	canonical	3	141	junction_8	24.9821811497715	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCCTGCCTGTTAGAGG	NA	False	NA	-30	True	AATACA	-10	NA	21803077	21773663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802650
ENSMUSG00000044627.12_0	chr2	-	714	5	FSM	ENSMUSG00000044627.12	ENSMUST00000183946.8	768	5	54	0	-9	0	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178026	32168827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
ENSMUSG00000044627.12_7	chr2	-	585	4	FSM	ENSMUSG00000044627.12	ENSMUST00000113397.9	580	4	-5	0	-5	0	multi-exon	FALSE	canonical	3	66	junction_2	1606.82426612938	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178022	32168827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32169144_32170720_32170816_32177608_32177658_32177897
ENSMUSG00000044628.6_0	chr2	+	1767	2	NNC	ENSMUSG00000044628.6	novel	1137	2	NA	NA	-698	-6	intron_retention	FALSE	canonical	3	42	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTTGCACTTGTTCACT	NA	False	NA	10	True	ATTAAA	-11	NA	25132242	25134267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_25132536_25132793
ENSMUSG00000044636.7_2	chr15	-	4141	5	FSM	ENSMUSG00000044636.7	ENSMUST00000061457.7	4375	5	227	7	227	-7	multi-exon	FALSE	canonical	3	12	junction_4	9.28372231381357	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGAATGGTGTGGGTTCT	NA	False	NA	-5	True	ATTAAA	-10	NA	100393142	100377457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100380582_100382330_100382628_100385825_100386086_100387315_100387548_100392914
ENSMUSG00000044636.7_3	chr15	-	2551	1	ISM	ENSMUSG00000044636.7	ENSMUST00000061457.7	4375	5	13361	7	13361	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGAATGGTGTGGGTTCT	NA	False	NA	-5	True	ATTAAA	-10	NA	100380008	100377457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100377500_100380000
ENSMUSG00000044636.7_4	chr15	-	3810	4	ISM	ENSMUSG00000044636.7	ENSMUST00000061457.7	4375	5	5925	7	5925	-7	3prime_fragment	FALSE	canonical	3	30	junction_3	2.16024689946929	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGAATGGTGTGGGTTCT	NA	False	NA	-5	True	ATTAAA	-10	NA	100387444	100377457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100380582_100382330_100382628_100385825_100386086_100387315
ENSMUSG00000044636.7_5	chr15	-	3656	3	ISM	ENSMUSG00000044636.7	ENSMUST00000061457.7	4375	5	7313	3	7313	-3	3prime_fragment	FALSE	canonical	3	34	junction_2	0.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGTGTGGGTTCTTTAT	NA	False	NA	-1	True	ATTAAA	-14	NA	100386056	100377453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100380582_100382330_100382628_100385825
ENSMUSG00000044636.7_6	chr15	-	3207	2	ISM	ENSMUSG00000044636.7	ENSMUST00000061457.7	4375	5	10961	2	10961	-2	3prime_fragment	FALSE	canonical	3	35	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTGTGGGTTCTTTATC	NA	False	NA	0	True	ATTAAA	-15	NA	100382408	100377452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_100380582_100382330
ENSMUSG00000044641.8_0	chr2	+	3411	3	FSM	ENSMUSG00000044641.8	ENSMUST00000052125.7	3399	3	-22	10	-22	-10	multi-exon	FALSE	canonical	3	144	junction_1	5.5	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGCTACTTTCTTGTT	NA	False	NA	NA	False	AATAAA	-12	NA	167922901	167943113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_167923280_167929261_167929485_167940303
ENSMUSG00000044641.8_7	chr2	+	2343	1	ISM	ENSMUSG00000044641.8	ENSMUST00000052125.7	3399	3	17849	8	17849	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGCTACTTTCTTGTTTG	4294	False	NA	NA	False	AATAAA	-14	NA	167940772	167943115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_167940800_167943100
ENSMUSG00000044645.9_0	chr17	+	1331	1	FSM	ENSMUSG00000044645.9	ENSMUST00000061681.9	756	1	-138	-437	-138	437	mono-exon	FALSE	NA	NA	NA	NA	NA	324	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATGAAAAAAAAATAAAAAAG	NA	False	NA	NA	False	AATAAA	-15	NA	51005577	51006908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_51005600_51006900
ENSMUSG00000044646.16_3	chr18	+	3823	3	FSM	ENSMUSG00000044646.16	ENSMUST00000167921.2	2147	3	23	-1699	23	-419	multi-exon	FALSE	canonical	0	0	junction_1	1	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGCTAGTTCTTTTTG	NA	False	NA	NA	False	TATAAA	-15	NA	76192551	76281213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_76192689_76269897_76271122_76278751
ENSMUSG00000044646.16_4	chr18	+	2424	1	ISM	ENSMUSG00000044646.16	ENSMUST00000058997.15	4572	5	325541	422	86261	-419	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGCTAGTTCTTTTTG	NA	False	NA	NA	False	TATAAA	-15	NA	76278789	76281213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_76278800_76281200
ENSMUSG00000044647.17_1	chr2	+	2532	7	FSM	ENSMUSG00000044647.17	ENSMUST00000122912.8	10672	7	77	8063	-1	-1	multi-exon	FALSE	canonical	1	2	junction_1	4.6696419087073	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTGTATTTTATTTAT	5680	False	NA	12	True	AAAAAG	-11	NA	65676187	65853827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_65676229_65690874_65691037_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
ENSMUSG00000044647.17_2	chr2	+	2371	6	FSM	ENSMUSG00000044647.17	ENSMUST00000053910.10	4495	6	2	2122	-1	0	multi-exon	FALSE	canonical	2	6	junction_1	3.18747549010185	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGTATTTTATTTATG	5680	False	NA	13	True	AAAAAG	-12	NA	65676187	65853828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_65676229_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
ENSMUSG00000044647.17_4	chr2	+	2397	5	FSM	ENSMUSG00000044647.17	ENSMUST00000145598.9	2566	5	167	2	167	-2	multi-exon	FALSE	canonical	2	3	junction_1	4.32290411644765	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTATTTTATTTA	NA	False	NA	11	True	AAAAAG	-10	NA	65762375	65853826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_65762533_65779302_65779474_65832646_65832907_65849783_65850081_65852314
ENSMUSG00000044647.17_6	chr2	+	6421	1	ISM	ENSMUSG00000044647.17	ENSMUST00000122912.8	10672	7	179351	8	76169	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGTAGCTGTTATTGCG	9620	False	NA	3	True	AGTAAA	-11	NA	65855461	65861882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_65855500_65861900
ENSMUSG00000044664.8_10	chr9	+	1939	2	ISM	ENSMUSG00000044664.8	ENSMUST00000035715.8	1584	5	1609	18	1609	-18	3prime_fragment	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAGCTAAGAAACTA	4319	False	NA	NA	False	GATAAA	-10	NA	110628842	110632804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110630040_110632062
ENSMUSG00000044664.8_11	chr9	+	345	1	ISM	ENSMUSG00000044664.8	ENSMUST00000035715.8	1584	5	5237	7	5237	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAACTATATGAGCAGAC	7947	False	NA	NA	False	GATAAA	-21	NA	110632470	110632815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110632500_110632800
ENSMUSG00000044674.7_0	chr5	-	4158	1	FSM	ENSMUSG00000044674.7	ENSMUST00000054294.7	4197	1	28	11	28	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATTACATTTTTCTGT	NA	False	NA	NA	False	AATAAA	-17	NA	4808007	4803849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_4803800_4808000
ENSMUSG00000044676.11_0	chr8	+	4922	5	FSM	ENSMUSG00000044676.11	ENSMUST00000058804.10	3180	5	-14	-1728	4	-3	multi-exon	FALSE	canonical	1	4	junction_2	8.66025403784439	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAATTGCTGAGACTTGC	939	False	NA	NA	False	AATAAA	-13	NA	110806381	110819370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_110806637_110809309_110809375_110810238_110810416_110810975_110811084_110815053
ENSMUSG00000044676.11_1	chr8	+	4882	5	FSM	ENSMUSG00000044676.11	ENSMUST00000212754.2	4863	5	-20	1	-4	-1	multi-exon	FALSE	canonical	3	11	junction_2	6.21992765231236	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTGCTGAGACTTGCTT	931	False	NA	NA	False	AATAAA	-15	NA	110806373	110819372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_110806637_110809309_110809375_110810288_110810416_110810975_110811084_110815053
ENSMUSG00000044676.11_2	chr8	+	4086	4	NIC	ENSMUSG00000044676.11	novel	3180	5	NA	NA	-15	9	intron_retention	FALSE	canonical	3	16	junction_1	4.98887651569859	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATAAGTTTGAGTTGTAA	920	False	NA	NA	False	AATAAA	-31	NA	110806362	110817651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_110806637_110809309_110810416_110810975_110811084_110815053
ENSMUSG00000044676.11_5	chr8	+	4766	4	NIC	ENSMUSG00000044676.11	novel	4863	5	NA	NA	4	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	6.68331255192114	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTGCTGAGACTTGCTT	939	False	NA	NA	False	AATAAA	-15	NA	110806381	110819372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_110806637_110809309_110809375_110810288_110810416_110815053
ENSMUSG00000044676.11_8	chr8	+	4194	1	ISM	ENSMUSG00000044676.11	ENSMUST00000212754.2	4863	5	8785	1	8783	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTGCTGAGACTTGCTT	9736	False	NA	NA	False	AATAAA	-15	NA	110815178	110819372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_110815200_110819400
ENSMUSG00000044678.12_0	chr15	-	618	4	FSM	ENSMUSG00000044678.12	ENSMUST00000060301.6	791	4	173	0	173	0	multi-exon	FALSE	canonical	3	104	junction_3	10.2740233382816	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTTGGTTTGACTTCTG	949	False	NA	-2	True	ATTAAA	-18	NA	74671662	74668722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_74669121_74670383_74670483_74671267_74671345_74671618
ENSMUSG00000044678.12_2	chr15	-	574	3	FSM	ENSMUSG00000044678.12	ENSMUST00000168815.8	612	3	38	0	38	0	multi-exon	FALSE	canonical	3	114	junction_2	7.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTTGGTTTGACTTCTG	1267	False	NA	-2	True	ATTAAA	-18	NA	74671344	74668722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_74669121_74670383_74670483_74671267
ENSMUSG00000044681.20_0	chr5	-	2692	3	FSM	ENSMUSG00000044681.20	ENSMUST00000118882.2	1984	3	106	-814	106	814	multi-exon	FALSE	canonical	3	175	junction_1	2	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCACTGTCTCTCTGCC	NA	False	NA	-4	True	ATTAAA	-25	NA	28414914	28406632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_28408435_28412284_28412382_28414121
ENSMUSG00000044681.20_2	chr5	-	2026	1	ISM	ENSMUSG00000044681.20	ENSMUST00000141601.9	3018	4	42943	19	7159	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAACTATACTTGTAAG	5956	False	NA	NA	False	ATTAAA	-8	NA	28407861	28405835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_28405800_28407900
ENSMUSG00000044681.20_4	chr5	-	3482	2	FSM	ENSMUSG00000044681.20	ENSMUST00000117098.2	2661	2	240	-1061	94	753	multi-exon	FALSE	canonical	3	179	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTACTGGATATTTATTC	NA	False	NA	NA	False	NA	NA	NA	28414926	28409704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_28412382_28414121
ENSMUSG00000044700.16_0	chr4	-	3682	11	FSM	ENSMUSG00000044700.16	ENSMUST00000105687.9	3697	11	7	8	7	0	multi-exon	FALSE	canonical	3	194	junction_3	67.7469556511582	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTATCAGGCTGTGTT	NA	False	NA	-9	True	AATAAA	-17	NA	149822494	149799839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149801535_149802476_149802615_149803107_149803402_149803968_149804041_149806663_149806897_149811683_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
ENSMUSG00000044700.16_2	chr4	-	4625	10	FSM	ENSMUSG00000044700.16	ENSMUST00000054459.11	4631	10	6	0	6	0	multi-exon	FALSE	canonical	3	194	junction_2	68.5966921421107	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTATCAGGCTGTGTT	NA	False	NA	-9	True	AATAAA	-17	NA	149822495	149799839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149802615_149803107_149803402_149803968_149804041_149806663_149806897_149811683_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
ENSMUSG00000044700.16_42	chr4	-	3600	6	FSM	ENSMUSG00000044700.16	ENSMUST00000103208.2	3620	6	13	7	13	-7	multi-exon	FALSE	canonical	3	307	junction_5	21.9508541975022	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGTACCGCGTCTTTTT	NA	False	NA	-15	True	AATAAA	-32	NA	149822488	149809327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
ENSMUSG00000044702.14_0	chr7	-	3718	13	FSM	ENSMUSG00000044702.14	ENSMUST00000098068.10	3750	13	26	6	-1	-1	multi-exon	FALSE	canonical	3	74	junction_9	28.0835806121655	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTCTGCTTGGCTTGTTC	NA	False	NA	-6	True	AATAAA	-14	NA	121732143	121706490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
ENSMUSG00000044702.14_14	chr7	-	3579	13	NIC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	-1	-3	combination_of_known_junctions	FALSE	canonical	3	16	junction_8	43.6898793264018	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATTCTGCTTGGCTTGT	NA	False	NA	-8	True	AATAAA	-12	NA	121732143	121706492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723616_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
ENSMUSG00000044702.14_15	chr7	-	1642	11	NIC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	-1	-1	combination_of_known_splicesites	FALSE	canonical	3	28	junction_8	41.0980534818865	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTCTGCTTGGCTTGTTC	NA	False	NA	-6	True	AATAAA	-14	NA	121732133	121706490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728145_121728240_121728896_121728957_121731942
ENSMUSG00000044702.14_16	chr7	-	4832	12	NIC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	74	junction_8	28.4038176924183	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTCTGCTTGGCTTGTTC	NA	False	NA	-6	True	AATAAA	-14	NA	121732143	121706490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_121706952_121709904_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
ENSMUSG00000044702.14_18	chr7	-	2935	10	ISM	ENSMUSG00000044702.14	ENSMUST00000098068.10	3750	13	4929	8	-3572	-3	3prime_fragment	FALSE	canonical	3	74	junction_9	32.1953911278702	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATTCTGCTTGGCTTGT	NA	False	NA	-8	True	AATAAA	-12	NA	121727240	121706492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271
ENSMUSG00000044702.14_21	chr7	-	2625	13	FSM	ENSMUSG00000044702.14	ENSMUST00000106469.8	2559	13	-72	6	1	-1	multi-exon	FALSE	canonical	3	13	junction_9	41.4242950721219	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTCTGCTTGGCTTGTTC	NA	False	NA	-6	True	AATAAA	-14	NA	121732139	121706490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121727360_121727667_121728145_121728240_121728896_121728957_121731942
ENSMUSG00000044702.14_3	chr7	-	1950	12	NIC	ENSMUSG00000044702.14	novel	2559	13	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	3	22	junction_8	40.7258522479556	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTCTGCTTGGCTTGTTC	NA	False	NA	-6	True	AATAAA	-14	NA	121732135	121706490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121727360_121727667_121728145_121728240_121728896_121728957_121731942
ENSMUSG00000044702.14_51	chr7	-	3293	12	FSM	ENSMUSG00000044702.14	ENSMUST00000106468.7	3304	12	7	4	-1	-4	multi-exon	FALSE	canonical	3	17	junction_1	44.3423943183529	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACGATTGCTTGTCGAAT	NA	False	NA	NA	False	AATAAA	-12	NA	121732133	121710798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_121710994_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
ENSMUSG00000044707.8_0	chr11	+	2677	6	FSM	ENSMUSG00000044707.8	ENSMUST00000050574.7	2672	6	-6	1	-6	-1	multi-exon	FALSE	canonical	3	6	junction_5	2.71293199325011	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACGATTGTGTCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	43419604	43477823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_43419795_43420181_43420287_43447381_43447596_43470510_43470814_43474006_43474167_43476118
ENSMUSG00000044708.6_0	chr1	+	2347	1	ISM	ENSMUSG00000044708.6	ENSMUST00000056136.4	5407	2	30529	0	30529	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTGTGTCTCCTTTTAG	643	False	NA	5	True	AATAAA	-19	NA	172199305	172201652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_172199300_172201700
ENSMUSG00000044709.7_0	chr7	-	928	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	9	177	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.5	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATCTGGCTCTGGCTTT	2911	False	NA	NA	False	AAGAAA	-12	NA	19307301	19298693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_19298802_19298849_19299602_19307233
ENSMUSG00000044709.7_1	chr7	-	903	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	11	175	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAAATCTGGCTCTGGCT	2475	False	NA	NA	False	AAGAAA	-10	NA	19307737	19298695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_19298802_19298849_19299602_19307692
ENSMUSG00000044709.7_10	chr7	-	796	2	FSM	ENSMUSG00000044709.7	ENSMUST00000122127.2	652	2	-7	-137	-7	-1	multi-exon	FALSE	canonical	3	34	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGGCTGCTGTGTGTGTG	3312	False	NA	-10	True	AATAAA	-18	NA	19306900	19298874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19299602_19306831
ENSMUSG00000044709.7_12	chr7	-	766	2	NIC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	15	-3	combination_of_known_splicesites	FALSE	canonical	3	54	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCAGGCTGCTGTGTGTG	2479	False	NA	-12	True	AATAAA	-16	NA	19307733	19298876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_19299602_19307692
ENSMUSG00000044709.7_13	chr7	-	1436	2	FSM	ENSMUSG00000044709.7	ENSMUST00000208826.2	613	2	-443	-380	-443	-1	multi-exon	FALSE	canonical	2	11	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTGCTGTGTGTGTGTGT	8082	False	NA	-7	True	AATAAA	-21	NA	19311963	19298871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19299602_19311257
ENSMUSG00000044709.7_9	chr7	-	794	2	FSM	ENSMUSG00000044709.7	ENSMUST00000051364.4	763	2	-29	-2	13	-1	multi-exon	FALSE	canonical	3	225	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTGCTGTGTGTGTGTGT	2915	False	NA	-7	True	AATAAA	-21	NA	19307297	19298871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19299602_19307233
ENSMUSG00000044712.16_0	chr12	+	2933	16	FSM	ENSMUSG00000044712.16	ENSMUST00000140523.8	3032	16	87	12	9	-12	multi-exon	FALSE	canonical	2	3	junction_10	3.76769897358528	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGCTGTTTGTATGCT	NA	False	NA	-4	True	NA	NA	NA	73333639	73400811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_73333807_73335166_73335298_73338933_73339008_73356918_73356972_73365750_73365791_73376753_73376833_73383795_73383879_73384283_73384343_73388181_73388248_73388480_73388535_73390442_73390523_73391566_73391668_73397287_73397413_73398524_73398670_73398852_73398948_73399230
ENSMUSG00000044712.16_4	chr12	+	3027	17	NIC	ENSMUSG00000044712.16	novel	3032	16	NA	NA	16	-12	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	4.37142711251143	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGCTGTTTGTATGCT	NA	False	NA	-4	True	NA	NA	NA	73333646	73400811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_73333807_73335166_73335298_73338933_73339008_73340472_73340574_73356918_73356972_73365750_73365791_73376753_73376833_73383795_73383879_73384283_73384343_73388181_73388248_73388480_73388535_73390442_73390523_73391566_73391668_73397287_73397413_73398524_73398670_73398852_73398948_73399230
ENSMUSG00000044712.16_7	chr12	+	900	1	ISM	ENSMUSG00000044712.16	ENSMUST00000140523.8	3032	16	66359	12	8771	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGCTGTTTGTATGCT	NA	False	NA	-4	True	NA	NA	NA	73399911	73400811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_73399900_73400800
ENSMUSG00000044715.8_0	chr12	+	1626	3	FSM	ENSMUSG00000044715.8	ENSMUST00000051934.7	2720	3	-4	1098	-4	-1098	multi-exon	FALSE	canonical	3	113	junction_2	9.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTTTCCAGTATGTGAC	NA	False	NA	13	True	AATAAA	-17	NA	105651638	105668184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105651718_105664976_105665236_105666896
ENSMUSG00000044715.8_1	chr12	+	2352	4	NNC	ENSMUSG00000044715.8	novel	2720	3	NA	NA	-2	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	58.2656750487703	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTGAGCATAAAGCAGTCA	NA	False	NA	NA	False	AATAAA	-19	NA	105651640	105669281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_105651718_105664976_105665236_105666896_105668682_105669050
ENSMUSG00000044715.8_2	chr12	+	515	2	FSM	ENSMUSG00000044715.8	ENSMUST00000222284.2	1064	2	549	0	-6	0	multi-exon	FALSE	canonical	3	132	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTGAGGGTGTAAATA	NA	False	NA	NA	False	AATAAA	-15	NA	105651636	105665410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105651718_105664976
ENSMUSG00000044715.8_4	chr12	+	2329	4	NNC	ENSMUSG00000044715.8	novel	2720	3	NA	NA	9	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	58.2656750487703	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTGAGCATAAAGCAGTCA	NA	False	NA	NA	False	AATAAA	-19	NA	105651668	105669281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_105651718_105664976_105665236_105666896_105668633_105668996
ENSMUSG00000044715.8_5	chr12	+	1493	2	ISM	ENSMUSG00000044715.8	ENSMUST00000051934.7	2720	3	13414	1072	13397	-1072	3prime_fragment	FALSE	canonical	3	113	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGACCTGGCTCTGTTCT	NA	False	NA	39	True	AATAAA	-43	NA	105665056	105668210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_105665236_105666896
ENSMUSG00000044716.13_0	chr5	+	2764	7	FSM	ENSMUSG00000044716.13	ENSMUST00000114270.8	2779	7	5	10	5	-10	multi-exon	FALSE	canonical	0	0	junction_1	1.10554159678513	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTACTGCCTTGCCT	NA	False	NA	NA	False	TTTAAA	-41	NA	35214210	35238298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_35214333_35214435_35214482_35221677_35221909_35223793_35223995_35232646_35232767_35234491_35234612_35236374
ENSMUSG00000044730.18_0	chr4	+	2837	6	NIC	ENSMUSG00000044730.18	novel	2911	5	NA	NA	0	-1	intron_retention	FALSE	non_canonical	3	26	junction_1	9.3936148526539	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATGACATTTGGTAAATA	NA	False	NA	3	True	AATAAA	-17	NA	124830850	124838447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_124830884_124830971_124831127_124832232_124832511_124834158_124834339_124836145_124836265_124836375
ENSMUSG00000044730.18_1	chr4	+	4766	4	FSM	ENSMUSG00000044730.18	ENSMUST00000233434.2	4749	4	-17	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	10.7806410858642	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGACATTTGGTAAATAT	NA	False	NA	4	True	AATAAA	-18	NA	124830840	124838448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124830884_124830971_124831127_124832232_124832511_124834158
ENSMUSG00000044730.18_10	chr4	+	1608	1	ISM	ENSMUSG00000044730.18	ENSMUST00000233434.2	4749	4	5983	0	-83	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGACATTTGGTAAATAT	NA	False	NA	4	True	AATAAA	-18	NA	124836840	124838448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_124836800_124838400
ENSMUSG00000044730.18_12	chr4	+	2372	3	ISM	ENSMUSG00000044730.18	ENSMUST00000094769.13	2911	5	3292	1	1588	0	3prime_fragment	FALSE	non_canonical	3	27	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGACATTTGGTAAATAT	NA	False	NA	4	True	AATAAA	-18	NA	124834158	124838448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_124834339_124836145_124836265_124836375
ENSMUSG00000044730.18_18	chr4	+	2948	5	NIC	ENSMUSG00000044730.18	novel	4749	4	NA	NA	1	0	intron_retention	FALSE	non_canonical	3	26	junction_1	9.33742469849155	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGACATTTGGTAAATAT	NA	False	NA	4	True	AATAAA	-18	NA	124830851	124838448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_124830884_124830971_124831127_124832232_124832511_124834158_124834339_124836145
ENSMUSG00000044730.18_2	chr4	+	2837	6	NIC	ENSMUSG00000044730.18	novel	2911	5	NA	NA	-2	0	intron_retention	FALSE	non_canonical	2	3	junction_1	16.1616830806695	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGACATTTGGTAAATAT	NA	False	NA	4	True	AATAAA	-18	NA	124830848	124838448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_124830881_124830971_124831127_124832232_124832511_124834158_124834339_124836145_124836265_124836375
ENSMUSG00000044730.18_20	chr4	+	2557	4	ISM	ENSMUSG00000044730.18	ENSMUST00000094769.13	2911	5	1456	4	-248	-3	3prime_fragment	FALSE	non_canonical	3	27	junction_3	4.64279609239471	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTATATGACATTTGGTAAA	NA	False	NA	1	True	AATAAA	-15	NA	124832322	124838445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_124832511_124834158_124834339_124836145_124836265_124836375
ENSMUSG00000044730.18_3	chr4	+	2767	5	NIC	ENSMUSG00000044730.18	novel	2911	5	NA	NA	-1	-180	intron_retention	FALSE	non_canonical	2	3	junction_1	17.9304210770411	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAATTTAAATACA	NA	False	NA	NA	False	AAAAAG	-42	NA	124830849	124838268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_124830881_124830971_124831127_124832232_124832511_124834158_124834339_124836145
ENSMUSG00000044730.18_4	chr4	+	817	3	FSM	ENSMUSG00000044730.18	ENSMUST00000233530.2	1203	3	-1	387	-1	-387	multi-exon	FALSE	canonical	3	26	junction_1	13	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	124830849	124832860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124830884_124830971_124831127_124832232
ENSMUSG00000044730.18_8	chr4	+	4810	3	ISM	ENSMUSG00000044730.18	ENSMUST00000094769.13	2911	5	17	2	17	-1	intron_retention	FALSE	canonical	3	35	junction_2	8.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATGACATTTGGTAAATA	NA	False	NA	3	True	AATAAA	-17	NA	124830883	124838447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_124831127_124832232_124832511_124834158
ENSMUSG00000044730.18_9	chr4	+	2889	5	FSM	ENSMUSG00000044730.18	ENSMUST00000094769.13	2911	5	20	2	20	-1	multi-exon	FALSE	non_canonical	3	27	junction_4	9.02773504263389	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATGACATTTGGTAAATA	NA	False	NA	3	True	AATAAA	-17	NA	124830886	124838447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124831127_124832232_124832511_124834158_124834339_124836145_124836265_124836375
ENSMUSG00000044734.17_0	chr13	-	1291	7	FSM	ENSMUSG00000044734.17	ENSMUST00000076352.8	1918	7	5	622	5	-622	multi-exon	FALSE	canonical	3	136	junction_6	10.85382677011	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAATCTTTCTTTTGTA	4874	False	NA	-5	True	AATAAA	-13	NA	33035163	33026696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_33027206_33029291_33029460_33029653_33029797_33031372_33031491_33032601_33032740_33034221_33034398_33035124
ENSMUSG00000044734.17_1	chr13	-	1451	7	NIC	ENSMUSG00000044734.17	novel	1918	7	NA	NA	5	-622	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	59.5018673843286	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAATCTTTCTTTTGTA	4874	False	NA	-5	True	AATAAA	-13	NA	33035163	33026696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_33027206_33029291_33029460_33029653_33029797_33031372_33031491_33032601_33032740_33034221_33034398_33034964
ENSMUSG00000044763.9_0	chr16	-	1842	2	FSM	ENSMUSG00000044763.9	ENSMUST00000059052.9	3002	2	49	1111	49	-1111	multi-exon	FALSE	canonical	3	404	junction_1	0	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCGATTCTTTGAATATCA	7435	False	NA	-5	True	AATAAA	-21	NA	55858133	55854082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_55855655_55857863
ENSMUSG00000044763.9_1	chr16	-	932	1	ISM	ENSMUSG00000044763.9	ENSMUST00000059052.9	3002	2	3168	1111	3168	-1111	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCGATTCTTTGAATATCA	NA	False	NA	-5	True	AATAAA	-21	NA	55855014	55854082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_55854100_55855000
ENSMUSG00000044768.17_1	chr1	-	2628	2	FSM	ENSMUSG00000044768.17	ENSMUST00000149927.2	2703	2	69	6	69	-6	multi-exon	FALSE	canonical	3	9	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCATTGTTTCGTGGT	NA	False	NA	-7	True	AATAAA	-12	NA	97589730	97571633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_97574087_97589555
ENSMUSG00000044768.17_2	chr1	-	3187	3	FSM	ENSMUSG00000044768.17	ENSMUST00000153115.8	3495	3	302	6	302	-6	multi-exon	FALSE	canonical	0	0	junction_2	30	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCATTGTTTCGTGGT	NA	False	NA	-7	True	AATAAA	-12	NA	97589099	97571633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_97574087_97582324_97582415_97588455
ENSMUSG00000044768.17_3	chr1	-	2709	3	FSM	ENSMUSG00000044768.17	ENSMUST00000053033.14	40378	3	78	37591	78	-6	multi-exon	FALSE	canonical	3	49	junction_2	5.5	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCATTGTTTCGTGGT	NA	False	NA	-7	True	AATAAA	-12	NA	97589721	97571633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_97574087_97582324_97582415_97589555
ENSMUSG00000044768.17_4	chr1	-	1175	1	ISM	ENSMUSG00000044768.17	ENSMUST00000053033.14	40378	3	16994	37588	16596	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCATTGTTTCGTGGTGTT	NA	False	NA	-4	True	AATAAA	-15	NA	97572805	97571630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_97571600_97572800
ENSMUSG00000044768.17_5	chr1	-	2654	3	FSM	ENSMUSG00000044768.17	ENSMUST00000142234.2	639	3	11	-2026	11	-6	multi-exon	FALSE	canonical	1	1	junction_2	29.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCATTGTTTCGTGGT	NA	False	NA	-7	True	AATAAA	-12	NA	97589390	97571633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_97574087_97582324_97582415_97589279
ENSMUSG00000044770.15_1	chr10	+	2087	5	ISM	ENSMUSG00000044770.15	ENSMUST00000105494.8	4166	7	69522	1977	-4023	31	3prime_fragment	FALSE	canonical	0	0	junction_1	1.29903810567666	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTCAATTTACAAATAGGT	NA	False	NA	NA	False	NA	NA	NA	42806310	42834797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_42806601_42810948_42811144_42822864_42823138_42831884_42832031_42833614
ENSMUSG00000044770.15_3	chr10	+	2699	1	ISM	ENSMUSG00000044770.15	ENSMUST00000063063.14	4885	9	97710	2	18199	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGGAAAAAAAAAAAGAGTC	6196	False	NA	NA	False	NA	NA	NA	42834075	42836774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_42834100_42836800
ENSMUSG00000044783.17_0	chr1	-	4126	9	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	2	-645	at_least_one_novel_splicesite	FALSE	non_canonical	3	150	junction_1	84.2673387202895	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCAATGTCGGTCTGCCC	8647	False	NA	-22	True	AATAAA	-16	NA	88205299	88190837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_88194001_88194051_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
ENSMUSG00000044783.17_1	chr1	-	4162	8	FSM	ENSMUSG00000044783.17	ENSMUST00000054674.15	4878	8	73	643	-3	-643	multi-exon	FALSE	canonical	3	259	junction_7	57.9852197916479	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAATGTCGGTCTGCCCTG	8664	False	NA	-20	True	AATAAA	-18	NA	88205282	88190835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
ENSMUSG00000044783.17_4	chr1	-	2626	1	ISM	ENSMUSG00000044783.17	ENSMUST00000054674.15	4878	8	11894	643	3653	-643	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAATGTCGGTCTGCCCTG	NA	False	NA	-20	True	AATAAA	-18	NA	88193461	88190835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_88190800_88193500
ENSMUSG00000044783.17_8	chr1	-	4091	7	NIC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	9	-645	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	112.85241099182	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCAATGTCGGTCTGCCC	8654	False	NA	-22	True	AATAAA	-16	NA	88205292	88190837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_88194381_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
ENSMUSG00000044786.7_0	chr7	-	1787	2	FSM	ENSMUSG00000044786.7	ENSMUST00000051241.7	2790	2	998	5	0	2	multi-exon	FALSE	canonical	3	36	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGAGATGAAATTTGTCT	6671	False	NA	-7	True	AATAAA	-13	NA	28078680	28076213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28077919_28078598
ENSMUSG00000044786.7_2	chr7	-	1211	1	FSM	ENSMUSG00000044786.7	ENSMUST00000209061.2	2465	1	1254	0	1254	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACTGAGATGAAATTTGT	7925	False	NA	-9	True	AATAAA	-11	NA	28077426	28076215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28076200_28077400
ENSMUSG00000044788.11_0	chr11	-	2920	1	ISM	ENSMUSG00000044788.11	ENSMUST00000056153.8	4951	6	14956	17	14956	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATATTTAAAAATGAACAT	NA	False	NA	NA	False	NA	NA	NA	115173384	115170464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115170500_115173400
ENSMUSG00000044788.11_1	chr11	-	1524	6	FSM	ENSMUSG00000044788.11	ENSMUST00000056153.8	4951	6	-33	3460	-33	-3460	multi-exon	FALSE	canonical	2	4	junction_5	1.6	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGACCCCCTCCCCTGTT	396	False	NA	NA	False	NA	NA	NA	115188373	115173907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115174482_115175025_115175206_115176124_115176313_115176943_115177125_115187363_115187531_115188139
ENSMUSG00000044788.11_2	chr11	-	1186	6	NIC	ENSMUSG00000044788.11	novel	4951	6	NA	NA	-11	-3745	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	1.95959179422654	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGCTGTGCATCCTGATC	269	False	NA	NA	False	AAGAAA	-13	NA	115188500	115174192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115174482_115175025_115175206_115176124_115176313_115176943_115177125_115187363_115187531_115188319
ENSMUSG00000044791.17_0	chr9	+	8271	21	NNC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-3401	-4	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_13	24.3052977764108	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTTGGAATGTGTGCTC	NA	False	NA	9	True	AATAAA	-10	NA	110358263	110447671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_110358374_110374367_110374384_110376276_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110419455_110419505_110421469_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
ENSMUSG00000044791.17_1	chr9	+	8276	21	NNC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-3401	-2	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	21.2388794431345	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGAATGTGTGCTCCC	NA	False	NA	11	True	AATAAA	-12	NA	110358263	110447673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_110358374_110374367_110374384_110376276_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110419455_110419505_110421466_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
ENSMUSG00000044791.17_10	chr9	+	8359	21	FSM	ENSMUSG00000044791.17	ENSMUST00000153838.8	8350	21	-38	29	-38	-3	multi-exon	FALSE	canonical	3	15	junction_1	28.3608885615384	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTGGAATGTGTGCTCC	NA	False	NA	10	True	AATAAA	-11	NA	110361626	110447672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110361821_110374367_110374384_110376276_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110419455_110419505_110421466_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
ENSMUSG00000044791.17_12	chr9	+	8410	21	NIC	ENSMUSG00000044791.17	novel	8350	21	NA	NA	-87	2	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	30.6144981993826	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATGTGTGCTCCCTCAA	NA	False	NA	15	True	AATAAA	-16	NA	110361577	110447677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110361821_110374367_110374384_110376276_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110419455_110419505_110421469_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
ENSMUSG00000044791.17_18	chr9	+	5461	19	NIC	ENSMUSG00000044791.17	novel	8350	21	NA	NA	-1396	3	combination_of_known_junctions	FALSE	canonical	3	46	junction_11	22.8065536390067	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGTGTGCTCCCTCAAA	NA	False	NA	16	True	AATAAA	-17	NA	110378967	110447678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110419455_110419505_110421469_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
ENSMUSG00000044791.17_19	chr9	+	5075	19	ISM	ENSMUSG00000044791.17	ENSMUST00000153838.8	8350	21	17687	28	-1012	-2	3prime_fragment	FALSE	canonical	3	73	junction_11	18.8384948679264	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGAATGTGTGCTCCC	NA	False	NA	11	True	AATAAA	-12	NA	110379351	110447673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110419455_110419505_110421466_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
ENSMUSG00000044791.17_36	chr9	+	2516	10	FSM	ENSMUSG00000044791.17	ENSMUST00000200460.5	2910	10	396	-2	134	2	multi-exon	FALSE	canonical	3	46	junction_2	29.7462519684891	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATGTGTGCTCCCTCAA	NA	False	NA	15	True	AATAAA	-16	NA	110403085	110447677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110403343_110419455_110419505_110421469_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
ENSMUSG00000044792.8_2	chr13	-	1898	4	FSM	ENSMUSG00000044792.8	ENSMUST00000057115.7	1942	4	35	9	1	-4	multi-exon	FALSE	canonical	3	417	junction_3	1.63299316185545	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATCCTAGTGGTTCCTTT	NA	False	NA	-6	True	ATTAAA	-14	NA	59917589	59903231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_59904818_59906703_59906810_59910555_59910610_59917437
ENSMUSG00000044795.13_0	chr11	-	3513	4	FSM	ENSMUSG00000044795.13	ENSMUST00000051620.5	753	4	-93	-2667	-93	980	multi-exon	FALSE	canonical	3	23	junction_3	12.1197726417986	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTCATCTGCAATAACT	NA	False	NA	-16	True	NA	NA	NA	69286252	69281770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69284695_69285453_69285673_69285797_69285875_69285959
ENSMUSG00000044795.13_2	chr11	-	3660	3	NIC	ENSMUSG00000044795.13	novel	753	4	NA	NA	-110	985	intron_retention	FALSE	canonical	3	23	junction_2	14.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTGCAATAACTAGTGG	NA	False	NA	-11	True	NA	NA	NA	69286269	69281765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69284695_69285453_69285875_69285959
ENSMUSG00000044795.13_5	chr11	-	3224	3	ISM	ENSMUSG00000044795.13	ENSMUST00000051620.5	753	4	283	-2669	283	982	3prime_fragment	FALSE	canonical	3	32	junction_2	10	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCATCTGCAATAACTAG	NA	False	NA	-14	True	NA	NA	NA	69285876	69281768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69284695_69285453_69285673_69285797
ENSMUSG00000044807.14_0	chr11	-	5360	5	NNC	ENSMUSG00000044807.14	novel	5325	5	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_4	8.46684711093805	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGATTTATAAAGTGG	297	False	NA	NA	False	AATAAA	-10	NA	50718550	50701919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_50706821_50707945_50708039_50708635_50708763_50717252_50717338_50718396
ENSMUSG00000044807.14_1	chr11	-	3506	1	ISM	ENSMUSG00000044807.14	ENSMUST00000109135.9	5325	5	13092	7	11860	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGATTTATAAAGTGG	NA	False	NA	NA	False	AATAAA	-10	NA	50705425	50701919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_50701900_50705400
ENSMUSG00000044807.14_2	chr11	-	5350	5	FSM	ENSMUSG00000044807.14	ENSMUST00000109135.9	5325	5	-32	7	2	-7	multi-exon	FALSE	canonical	3	17	junction_4	5.87367006223537	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGATTTATAAAGTGG	298	False	NA	NA	False	AATAAA	-10	NA	50718549	50701919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_50706821_50707945_50708039_50708635_50708763_50717252_50717338_50718405
ENSMUSG00000044807.14_3	chr11	-	5947	4	NIC	ENSMUSG00000044807.14	novel	5325	5	NA	NA	2	-7	intron_retention	FALSE	canonical	3	17	junction_3	6.23609564462324	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGATTTATAAAGTGG	298	False	NA	NA	False	AATAAA	-10	NA	50718549	50701919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_50706821_50707945_50708763_50717252_50717338_50718405
ENSMUSG00000044807.14_6	chr11	-	5417	6	NIC	ENSMUSG00000044807.14	novel	5325	5	NA	NA	2	-11	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	11.4786758818254	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGCAAAAATGATTTATAAA	298	False	NA	NA	False	AATAAA	-6	NA	50718549	50701923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_50706821_50707945_50708039_50708115_50708187_50708635_50708763_50717252_50717338_50718405
ENSMUSG00000044813.16_0	chr4	-	2712	6	FSM	ENSMUSG00000044813.16	ENSMUST00000061986.12	2244	6	-474	6	-474	-6	multi-exon	FALSE	canonical	3	103	junction_2	2.71293199325011	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATATATTATTAGTCGGG	-20	True	NA	NA	False	AATAAA	-11	NA	45530804	45423283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_45424124_45444678_45444799_45447505_45447678_45458126_45458343_45489054_45489176_45529561
ENSMUSG00000044835.16_10	chr1	+	609	2	ISM	ENSMUSG00000044835.16	ENSMUST00000052245.9	849	6	-18	12710	9	-11814	5prime_fragment	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTGACAGCTGTGTTTC	NA	False	NA	NA	False	ATTAAA	-32	NA	160970318	160979051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_160970411_160978534
ENSMUSG00000044835.16_11	chr1	+	3633	8	NNC	ENSMUSG00000044835.16	novel	3714	7	NA	NA	1	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	42.3546735006532	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAATTTTATGTTACACG	NA	False	NA	2	True	NA	NA	NA	160970310	160998064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_160970411_160978534_160978888_160982815_160982984_160988236_160988332_160990836_160990976_160991741_160991785_160995281_160995674_160995721
ENSMUSG00000044835.16_16	chr1	+	3608	9	NNC	ENSMUSG00000044835.16	novel	3714	7	NA	NA	1	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	45.1204983904212	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAATTTTATGTTACACG	NA	False	NA	2	True	NA	NA	NA	160970310	160998064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_160970411_160978534_160978888_160982815_160982984_160988236_160988332_160990836_160990976_160991741_160991785_160995281_160995606_160995654_160995708_160995731
ENSMUSG00000044835.16_39	chr1	+	1536	1	ISM	ENSMUSG00000044835.16	ENSMUST00000111608.8	3714	7	26249	2	26194	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTTATGTTACACGTT	6832	False	NA	4	True	NA	NA	NA	160996530	160998066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_160996500_160998100
ENSMUSG00000044835.16_8	chr1	+	3625	8	NNC	ENSMUSG00000044835.16	novel	3714	7	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	42.3546735006532	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTTATGTTACACGTT	NA	False	NA	4	True	NA	NA	NA	160970318	160998066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_160970411_160978534_160978888_160982815_160982984_160988236_160988332_160990836_160990976_160991741_160991785_160995281_160995541_160995590
ENSMUSG00000044847.14_0	chr11	-	3697	1	ISM	ENSMUSG00000044847.14	ENSMUST00000129820.8	6453	4	12969	1	12969	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGCTTGCTGCTTGGTCT	NA	False	NA	-6	True	AATAAA	-14	NA	45822793	45819096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_45819100_45822800
ENSMUSG00000044847.14_1	chr11	-	3469	4	FSM	ENSMUSG00000044847.14	ENSMUST00000129820.8	6453	4	11	2973	11	-162	multi-exon	FALSE	canonical	3	99	junction_3	23.3666428910958	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTGTGTGTGTTCTATC	NA	False	NA	NA	False	NA	NA	NA	45835751	45822068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_45824851_45825247_45825332_45828185_45828326_45835288
ENSMUSG00000044857.9_0	chr17	-	2583	9	FSM	ENSMUSG00000044857.9	ENSMUST00000055117.9	2627	9	32	12	32	-12	multi-exon	FALSE	canonical	3	431	junction_7	66.5158580715907	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAGAACGGATGTGGTTT	8025	False	NA	-13	True	AATAAA	-7	NA	27423411	27408585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27409765_27411905_27412009_27412076_27412179_27412811_27412958_27414298_27414379_27415109_27415187_27418336_27418413_27420610_27420652_27422632
ENSMUSG00000044857.9_6	chr17	-	1032	1	ISM	ENSMUSG00000044857.9	ENSMUST00000236082.2	2808	7	9832	8	2841	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGGATGTGGTTTTATT	NA	False	NA	-9	True	AATAAA	-11	NA	27409613	27408581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27408600_27409600
ENSMUSG00000044864.17_0	chr3	-	5669	5	NIC	ENSMUSG00000044864.17	novel	7031	4	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	27	junction_4	7.49583217528247	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGTCCACTAACCTTCA	NA	False	NA	-11	True	AATAAA	-18	NA	38538991	38506226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_38506655_38508189_38511735_38517048_38517279_38536839_38538134_38538819
ENSMUSG00000044864.17_1	chr3	-	2502	2	FSM	ENSMUSG00000044864.17	ENSMUST00000094300.4	1944	2	-556	-2	-556	2	multi-exon	FALSE	canonical	3	44	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTCCACTAACCTTCAG	NA	False	NA	-10	True	AATAAA	-19	NA	38510262	38506225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_38506655_38508189
ENSMUSG00000044864.17_2	chr3	-	1865	1	ISM	ENSMUSG00000044864.17	ENSMUST00000120875.8	4945	4	33322	399	4035	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAGATGCCTTGGTTTA	NA	False	NA	NA	False	AATAAA	-13	NA	38505671	38503806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_38503800_38505700
ENSMUSG00000044864.17_3	chr3	-	5319	4	FSM	ENSMUSG00000044864.17	ENSMUST00000156038.2	7031	4	-714	2426	-714	2	multi-exon	FALSE	canonical	3	42	junction_2	1.63299316185545	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTCCACTAACCTTCAG	NA	False	NA	-10	True	AATAAA	-19	NA	38537954	38506225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_38506655_38508189_38511735_38517048_38517279_38536839
ENSMUSG00000044864.17_4	chr3	-	2096	4	FSM	ENSMUSG00000044864.17	ENSMUST00000120875.8	4945	4	41	2808	12	12	multi-exon	FALSE	canonical	1	1	junction_1	18.4451137763426	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTTCAGCATTGGATAA	NA	False	NA	0	True	AATAAA	-29	NA	38538952	38506215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_38506655_38517048_38517279_38536839_38538134_38538819
ENSMUSG00000044864.17_6	chr3	-	5264	5	NIC	ENSMUSG00000044864.17	novel	7031	4	NA	NA	-9	2	combination_of_known_junctions	FALSE	canonical	1	4	junction_4	17.3781471969828	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTCCACTAACCTTCAG	NA	False	NA	-10	True	AATAAA	-19	NA	38539002	38506225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_38506655_38508189_38511735_38517048_38517279_38536839_38537717_38538819
ENSMUSG00000044876.16_0	chr7	+	1614	5	FSM	ENSMUSG00000044876.16	ENSMUST00000108566.8	1648	5	28	6	-23	-6	multi-exon	FALSE	canonical	3	144	junction_2	66.2740522376593	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGAGTCTGACTCTCCG	2995	False	NA	9	True	AATAAA	-18	NA	6175539	6193414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6175574_6176980_6177101_6186860_6187202_6191132_6191242_6192404
ENSMUSG00000044876.16_1	chr7	+	1495	4	FSM	ENSMUSG00000044876.16	ENSMUST00000054680.12	2467	4	38	934	-24	-6	multi-exon	FALSE	canonical	3	89	junction_1	90.9004339312464	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGAGTCTGACTCTCCG	2994	False	NA	9	True	AATAAA	-18	NA	6175538	6193414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6175574_6186860_6187202_6191132_6191242_6192404
ENSMUSG00000044876.16_13	chr7	+	1582	4	ISM	ENSMUSG00000044876.16	ENSMUST00000108566.8	1648	5	1467	6	6	-6	3prime_fragment	FALSE	canonical	3	144	junction_1	65.0350332940297	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGAGTCTGACTCTCCG	4434	False	NA	9	True	AATAAA	-18	NA	6176978	6193414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_6177101_6186860_6187202_6191132_6191242_6192404
ENSMUSG00000044876.16_18	chr7	+	1456	3	ISM	ENSMUSG00000044876.16	ENSMUST00000108566.8	1648	5	11353	6	290	-6	3prime_fragment	FALSE	canonical	3	275	junction_2	6.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGAGTCTGACTCTCCG	NA	False	NA	9	True	AATAAA	-18	NA	6186864	6193414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_6187202_6191132_6191242_6192404
ENSMUSG00000044876.16_21	chr7	+	145	1	ISM	ENSMUSG00000044876.16	ENSMUST00000108567.9	5104	5	17790	3395	6696	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGAGTCTGACTCTCCGG	2044	False	NA	10	True	AATAAA	-19	NA	6193270	6193415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_6193300_6193400
ENSMUSG00000044881.8_0	chr7	+	817	2	FSM	ENSMUSG00000044881.8	ENSMUST00000054310.4	1391	2	1	573	1	17	multi-exon	FALSE	canonical	3	255	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGTTTCCGCAGTGACATA	7572	False	NA	13	True	AATAAA	-22	NA	100186307	100189003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100186400_100188278
ENSMUSG00000044881.8_1	chr7	+	894	2	FSM	ENSMUSG00000044881.8	ENSMUST00000120454.3	742	2	-131	-21	1	21	multi-exon	FALSE	canonical	2	17	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCGCAGTGACATAAGTG	7572	False	NA	17	True	AATAAA	-26	NA	100186307	100189007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100186473_100188278
ENSMUSG00000044881.8_2	chr7	+	580	1	ISM	ENSMUSG00000044881.8	ENSMUST00000054310.4	1391	2	2112	578	1980	12	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTCGGTTTCCGCAGTG	9683	False	NA	8	True	AATAAA	-17	NA	100188418	100188998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100188400_100189000
ENSMUSG00000044894.15_0	chr11	-	473	2	FSM	ENSMUSG00000044894.15	ENSMUST00000061326.5	1521	2	17	1031	17	0	multi-exon	FALSE	canonical	3	5710	junction_1	0	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2964	False	NA	-8	True	AATAAA	-17	NA	53321637	53319779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_53319978_53321362
ENSMUSG00000044894.15_1	chr11	-	401	3	FSM	ENSMUSG00000044894.15	ENSMUST00000109021.4	405	3	4	0	4	0	multi-exon	FALSE	canonical	3	885	junction_2	2412.5	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2951	False	NA	-8	True	AATAAA	-17	NA	53321650	53319779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_53319978_53321362_53321530_53321614
ENSMUSG00000044906.7_1	chr18	-	3487	8	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	3	-1	intron_retention	FALSE	canonical	3	98	junction_4	41.1701298496463	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATATGTTGTTACGTCTC	NA	False	NA	-4	True	AATAAA	-16	NA	70605548	70585284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUSG00000044906.7_2	chr18	-	3491	8	NIC	ENSMUSG00000044906.7	novel	1715	9	NA	NA	1	-3	intron_retention	FALSE	canonical	3	82	junction_4	46.2782180878624	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATATATGTTGTTACGTC	NA	False	NA	-6	True	AATAAA	-14	NA	70605550	70585286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUSG00000044906.7_3	chr18	-	3214	9	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	5	-3	combination_of_known_junctions	FALSE	canonical	3	72	junction_5	57.5298835389052	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATATATGTTGTTACGTC	NA	False	NA	-6	True	AATAAA	-14	NA	70605546	70585286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUSG00000044906.7_4	chr18	-	2920	9	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	3	27	junction_5	65.9430388668887	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATATATGTTGTTACGTC	NA	False	NA	-6	True	AATAAA	-14	NA	70605551	70585286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70601124_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUSG00000044906.7_6	chr18	-	2924	9	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	3	27	junction_5	68.2567533288831	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATATATGTTGTTACGTC	NA	False	NA	-6	True	AATAAA	-14	NA	70605551	70585286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70600557_70601124_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUSG00000044906.7_64	chr18	-	2466	4	FSM	ENSMUSG00000044906.7	ENSMUST00000237800.2	4393	4	30	1897	6	-1897	multi-exon	FALSE	canonical	3	180	junction_3	21.483844059096	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACACCTAAGATGAGTATG	NA	False	NA	NA	False	ATTAAA	-10	NA	70605545	70599942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUSG00000044906.7_8	chr18	-	3211	9	FSM	ENSMUSG00000044906.7	ENSMUST00000067556.4	2291	9	5	-925	5	-2	multi-exon	FALSE	canonical	3	72	junction_5	54.5590276672889	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATATGTTGTTACGTCT	NA	False	NA	-5	True	AATAAA	-15	NA	70605546	70585285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUSG00000044916.11_0	chr2	+	1968	1	FSM	ENSMUSG00000044916.11	ENSMUST00000189714.2	1066	1	-907	5	-907	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAGTGCTTGGCTCCATA	NA	False	NA	NA	False	CATAAA	-13	NA	92211975	92213943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_92212000_92213900
ENSMUSG00000044927.7_0	chr6	-	1211	1	FSM	ENSMUSG00000044927.7	ENSMUST00000056403.7	1217	1	4	2	4	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	289	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATTGTCGTTGTCTTGT	6913	False	NA	-4	True	AATAAA	-14	NA	87958615	87957404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_87957400_87958600
ENSMUSG00000044933.4_0	chr15	-	4431	3	FSM	ENSMUSG00000044933.4	ENSMUST00000053239.4	4275	3	-167	11	-167	-11	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACCTTTTTCTCTGTGT	NA	False	NA	NA	False	AATAAA	-10	NA	78429052	78421218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_78424786_78428002_78428150_78428335
ENSMUSG00000044934.14_0	chr13	-	3520	5	FSM	ENSMUSG00000044934.14	ENSMUST00000059817.12	3532	5	1	11	1	-11	multi-exon	FALSE	canonical	3	41	junction_4	7.32717544487642	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGCATAAAGTACATGGG	6051	False	NA	NA	False	AATAAA	-15	NA	64301015	64280842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_64283351_64290021_64290161_64291968_64292089_64293343_64293495_64300413
ENSMUSG00000044934.14_1	chr13	-	2110	1	ISM	ENSMUSG00000044934.14	ENSMUST00000059817.12	3532	5	18065	10	15077	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATAAAGTACATGGGT	6206	False	NA	NA	False	AATAAA	-16	NA	64282951	64280841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_64280800_64283000
ENSMUSG00000044949.5_0	chr11	+	3004	3	FSM	ENSMUSG00000044949.5	ENSMUST00000051053.5	1012	3	29	-2021	29	2021	multi-exon	FALSE	canonical	3	148	junction_1	5	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTGTCTTTGCCATTA	4510	False	NA	12	True	TTTAAA	-18	NA	32405398	32468708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_32405547_32449224_32449462_32466089
ENSMUSG00000044949.5_5	chr11	+	2799	2	ISM	ENSMUSG00000044949.5	ENSMUST00000051053.5	1012	3	43912	-2021	43912	2021	3prime_fragment	FALSE	canonical	3	158	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTGTCTTTGCCATTA	NA	False	NA	12	True	TTTAAA	-18	NA	32449281	32468708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_32449462_32466089
ENSMUSG00000044950.8_0	chr11	+	2902	4	FSM	ENSMUSG00000044950.8	ENSMUST00000094294.5	1814	4	-31	-1057	29	-23	multi-exon	FALSE	canonical	3	18	junction_2	38.4013888637725	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAGAAAAAAAAAAAA	NA	False	NA	72	True	TTTAAA	-33	NA	43572853	43612295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_43573444_43595360_43596305_43607856_43607977_43611047
ENSMUSG00000044950.8_2	chr11	+	3228	2	FSM	ENSMUSG00000044950.8	ENSMUST00000061070.6	3277	2	43	6	-17	-6	multi-exon	FALSE	canonical	3	104	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCAAATTATTTGTGTG	NA	False	NA	NA	False	AATAAA	-8	NA	43572867	43598012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_43573444_43595360
ENSMUSG00000044950.8_27	chr11	+	2056	1	ISM	ENSMUSG00000044950.8	ENSMUST00000061070.6	3277	2	23132	6	-113	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCAAATTATTTGTGTG	1400	False	NA	NA	False	AATAAA	-8	NA	43595956	43598012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_43596000_43598000
ENSMUSG00000044950.8_3	chr11	+	2779	3	NIC	ENSMUSG00000044950.8	novel	1814	4	NA	NA	-28	-23	combination_of_known_junctions	FALSE	canonical	3	62	junction_2	21	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAGAAAAAAAAAAAA	NA	False	NA	72	True	TTTAAA	-33	NA	43572856	43612295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_43573444_43595360_43596305_43611047
ENSMUSG00000044950.8_30	chr11	+	1225	1	ISM	ENSMUSG00000044950.8	ENSMUST00000129229.2	1506	2	15009	15	2596	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	80	True	TTTAAA	-41	NA	43611078	43612303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_43611100_43612300
ENSMUSG00000044952.6_1	chr7	+	2958	2	FSM	ENSMUSG00000044952.6	ENSMUST00000054107.6	2966	2	-3	11	-3	-11	multi-exon	FALSE	canonical	2	2	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATGACAATTACTTTGT	NA	False	NA	NA	False	NA	NA	NA	96981530	96999409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_96981579_96996499
ENSMUSG00000044952.6_3	chr7	+	2296	1	ISM	ENSMUSG00000044952.6	ENSMUST00000054107.6	2966	2	15590	1	15590	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTACTTTGTGTCTGCTTCC	NA	False	NA	NA	False	GATAAA	-6	NA	96997123	96999419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_96997100_96999400
ENSMUSG00000044968.17_1	chr5	-	1585	1	ISM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	36884	25	36884	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAGTAAATATTATAA	NA	False	NA	NA	False	AATATA	-24	NA	21869508	21867923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_21867900_21869500
ENSMUSG00000044968.17_12	chr5	-	3061	2	ISM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	17506	10873	17506	-10871	internal_fragment	FALSE	canonical	3	67	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATTCTGTGCACATGTA	NA	False	NA	NA	False	AATAAA	-9	NA	21888886	21878771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_21881100_21888153
ENSMUSG00000044968.17_2	chr5	-	2750	3	ISM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	25688	79	25688	-77	3prime_fragment	FALSE	canonical	3	114	junction_2	10.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGTCTACTCTTGTT	NA	False	NA	NA	False	AATAAA	-6	NA	21880704	21867977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_21870361_21875486_21875602_21880452
ENSMUSG00000044968.17_3	chr5	-	3914	5	FSM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	31	9	31	-7	multi-exon	FALSE	canonical	3	8	junction_4	48.8108594474631	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAGTACTTGAAAAGAT	NA	False	NA	NA	False	AATAAA	-10	NA	21906361	21867907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21905972
ENSMUSG00000044968.17_4	chr5	-	3689	5	FSM	ENSMUSG00000044968.17	ENSMUST00000060899.9	3724	5	21	14	19	-14	multi-exon	FALSE	canonical	3	17	junction_4	45.4883226773641	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATTATAAAAGTACTTG	NA	False	NA	NA	False	AATAAA	-3	NA	21906373	21867914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21906202
ENSMUSG00000044968.17_6	chr5	-	3876	4	ISM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	17508	79	17508	-77	3prime_fragment	FALSE	canonical	3	67	junction_3	28.4292494136272	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGTCTACTCTTGTT	NA	False	NA	NA	False	AATAAA	-6	NA	21888884	21867977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153
ENSMUSG00000044982.8_0	chr18	-	2153	1	FSM	ENSMUSG00000044982.8	ENSMUST00000054984.8	2727	1	570	4	570	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATGAGCTGGATGGTC	NA	False	NA	NA	False	TATAAA	-14	NA	32044307	32042154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_32042200_32044300
ENSMUSG00000044986.11_0	chr15	-	1115	2	FSM	ENSMUSG00000044986.11	ENSMUST00000058659.9	1144	2	25	4	25	-4	multi-exon	FALSE	canonical	3	371	junction_1	0	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGTGTGTCTGCCTCCTT	8109	False	NA	-7	True	AATAAA	-13	NA	78290082	78283759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_78284231_78289438
ENSMUSG00000044991.11_0	chr2	+	1042	3	FSM	ENSMUSG00000044991.11	ENSMUST00000061891.11	1076	3	33	1	33	-1	multi-exon	FALSE	canonical	3	37	junction_1	20.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTTGACTCAGTCTATTT	NA	False	NA	26	True	NA	NA	NA	132528883	132592974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_132528902_132533869_132534052_132592132
ENSMUSG00000044991.11_2	chr2	+	1170	3	NNC	ENSMUSG00000044991.11	novel	1076	3	NA	NA	1670	-2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	2.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCTTGACTCAGTCTATT	NA	False	NA	25	True	NA	NA	NA	132533872	132592973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_132534052_132572619_132572770_132592132
ENSMUSG00000044991.11_4	chr2	+	1020	2	ISM	ENSMUSG00000044991.11	ENSMUST00000110132.3	1471	3	1670	2	1670	-2	3prime_fragment	FALSE	canonical	3	78	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCTTGACTCAGTCTATT	NA	False	NA	25	True	NA	NA	NA	132533872	132592973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_132534052_132592132
ENSMUSG00000045005.10_0	chr1	-	1963	1	ISM	ENSMUSG00000045005.10	ENSMUST00000063982.7	6915	2	5220	11	5218	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATGTAATGGAGGCGT	NA	False	NA	NA	False	ATTAAA	-11	NA	64771690	64769727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_64769700_64771700
ENSMUSG00000045005.10_1	chr1	-	2962	2	FSM	ENSMUSG00000045005.10	ENSMUST00000063982.7	6915	2	97	3856	95	55	multi-exon	FALSE	canonical	3	55	junction_1	0	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTTTTTTTTTTTTTAT	NA	False	NA	-5	True	AATATA	-14	NA	64776813	64773572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_64776013_64776291
ENSMUSG00000045005.10_2	chr1	-	2804	2	FSM	ENSMUSG00000045005.10	ENSMUST00000116133.4	2895	2	146	-55	146	55	multi-exon	FALSE	canonical	3	23	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTTTTTTTTTTTTTAT	NA	False	NA	-5	True	AATATA	-14	NA	64776762	64773572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_64776013_64776398
ENSMUSG00000045007.10_1	chr11	+	1742	11	FSM	ENSMUSG00000045007.10	ENSMUST00000043654.10	1754	11	7	5	7	-5	multi-exon	TRUE	canonical	2	5	junction_5	90.3044295702044	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAGCAGAGCTTTGTTTG	1658	False	NA	NA	False	AATAAA	-17	NA	101046739	101052608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101046995_101047273_101047387_101047578_101047747_101048277_101048347_101048608_101048689_101049834_101049962_101050882_101050970_101051072_101051223_101051619_101051773_101051852_101052015_101052230
ENSMUSG00000045009.10_0	chr6	-	3397	4	FSM	ENSMUSG00000045009.10	ENSMUST00000204134.3	3424	4	26	1	-12	-1	multi-exon	FALSE	canonical	3	8	junction_1	2.62466929133727	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGCCTCGCTCTGGTCA	4311	False	NA	0	True	AATAAA	-17	NA	113478866	113470886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113473027_113473892_113474049_113474232_113475278_113478810
ENSMUSG00000045009.10_1	chr6	-	3687	4	NIC	ENSMUSG00000045009.10	novel	3424	4	NA	NA	1	-19	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	2.16024689946929	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTTTTTTGTAGATTTA	4286	False	NA	NA	False	TTTAAA	-3	NA	113478891	113470618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113473027_113473892_113474046_113474232_113475278_113478810
ENSMUSG00000045009.10_2	chr6	-	1979	3	NIC	ENSMUSG00000045009.10	novel	1956	3	NA	NA	-1	-7	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGGTTCTGTTGTGTT	4322	False	NA	NA	False	NA	NA	NA	113478855	113473235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113474046_113474232_113475357_113478810
ENSMUSG00000045009.10_4	chr6	-	1728	1	ISM	ENSMUSG00000045009.10	ENSMUST00000204268.3	3741	4	6226	291	6161	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTCATGCCTCGCTCTG	NA	False	NA	-4	True	AATAAA	-13	NA	113472618	113470890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_113470900_113472600
ENSMUSG00000045009.10_5	chr6	-	1963	3	FSM	ENSMUSG00000045009.10	ENSMUST00000205075.2	1956	3	-7	0	-7	0	multi-exon	FALSE	canonical	2	4	junction_2	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCAAAAGCACTTTTG	4316	False	NA	NA	False	NA	NA	NA	113478861	113473260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113474049_113474232_113475357_113478810
ENSMUSG00000045009.10_6	chr6	-	3456	4	FSM	ENSMUSG00000045009.10	ENSMUST00000204268.3	3741	4	-4	289	0	-3	multi-exon	FALSE	canonical	2	4	junction_3	4.10960933531265	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCATGCCTCGCTCTGGT	4329	False	NA	-2	True	AATAAA	-15	NA	113478848	113470888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113473027_113473892_113474049_113474232_113475357_113478810
ENSMUSG00000045009.10_8	chr6	-	1913	3	NIC	ENSMUSG00000045009.10	novel	1903	3	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTTGTGTTGTTTCTT	4316	False	NA	NA	False	NA	NA	NA	113478861	113473228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113474046_113474232_113475278_113478810
ENSMUSG00000045009.10_9	chr6	-	1891	3	FSM	ENSMUSG00000045009.10	ENSMUST00000205170.2	1903	3	-13	25	-7	7	multi-exon	FALSE	canonical	3	13	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCACTTTTGTGTTTGT	4316	False	NA	NA	False	NA	NA	NA	113478861	113473253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113474049_113474232_113475278_113478810
ENSMUSG00000045010.15_0	chrX	-	2000	6	FSM	ENSMUSG00000045010.15	ENSMUST00000147742.9	1991	6	-11	2	-11	-2	multi-exon	FALSE	canonical	3	142	junction_5	73.271003814606	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGTACTTTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	100838040	100833955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100834130_100834212_100834255_100834844_100834891_100835166_100835250_100835786_100835944_100836542
ENSMUSG00000045010.15_2	chrX	-	2866	4	NIC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	-11	-2	intron_retention	FALSE	canonical	3	142	junction_3	69.5317673201729	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGTACTTTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	100838040	100833955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_100834130_100834212_100835250_100835786_100835944_100836542
ENSMUSG00000045010.15_3	chrX	-	2250	6	NIC	ENSMUSG00000045010.15	novel	1190	7	NA	NA	-11	-2	intron_retention	FALSE	canonical	3	117	junction_2	83.8035798758024	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGTACTTTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	100838040	100833955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_100834130_100834212_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
ENSMUSG00000045010.15_5	chrX	-	2591	5	NIC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	-12	-2	intron_retention	FALSE	canonical	3	142	junction_4	69.9052930757035	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGTACTTTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	100838041	100833955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_100834130_100834212_100834891_100835166_100835250_100835786_100835944_100836542
ENSMUSG00000045010.15_6	chrX	-	2049	7	FSM	ENSMUSG00000045010.15	ENSMUST00000124577.8	1190	7	-1156	297	4	-2	multi-exon	FALSE	canonical	3	11	junction_2	111.484926734016	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGTACTTTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	100838025	100833955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100834130_100834212_100834255_100834440_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
ENSMUSG00000045031.19_0	chr3	-	1064	5	FSM	ENSMUSG00000045031.19	ENSMUST00000102955.11	1064	5	-1	1	-1	-1	multi-exon	TRUE	canonical	3	18	junction_2	3.41869858279434	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAGTATCTTCTGGTAG	NA	False	NA	NA	False	AATAAA	-20	NA	37366596	37362771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_37363331_37363493_37363632_37364085_37364215_37364441_37364589_37366505
ENSMUSG00000045038.15_2	chr17	+	3036	1	ISM	ENSMUSG00000045038.15	ENSMUST00000097275.9	6254	15	487097	2	161555	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCTCTGTCCCAACAAG	807	False	NA	24	True	AATAAA	-19	NA	86962309	86965345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_86962300_86965300
ENSMUSG00000045039.10_1	chr7	+	10309	41	FSM	ENSMUSG00000045039.10	ENSMUST00000128119.2	10040	41	-278	9	-278	-6	multi-exon	TRUE	canonical	1	8	junction_9	8.91613705592282	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACTTGTGCATCGTAA	NA	False	NA	2	True	AATAAA	-7	NA	25016310	25065333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_25017119_25025804_25025969_25026894_25027102_25027909_25028091_25028176_25028266_25029285_25029702_25030110_25030257_25030438_25030562_25033182_25033338_25033553_25033674_25033990_25034136_25034216_25034381_25037198_25037400_25037783_25037985_25038889_25039127_25039643_25039763_25039841_25039974_25040057_25040172_25040396_25040646_25041122_25041323_25041637_25041849_25041944_25042195_25043090_25043224_25045524_25045773_25045850_25045962_25046100_25046220_25046740_25046949_25047648_25047830_25048339_25048504_25049079_25049225_25053150_25053383_25054437_25054562_25054726_25054941_25055158_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ENSMUSG00000045039.10_11	chr7	+	6558	23	ISM	ENSMUSG00000045039.10	ENSMUST00000128119.2	10040	41	23844	2	-4973	1	3prime_fragment	FALSE	canonical	3	17	junction_4	7.48883466422508	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGCATCGTAACTTCATC	NA	False	NA	9	True	AATAAA	-14	NA	25040432	25065340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25040646_25041122_25041323_25041637_25041849_25041944_25042195_25043090_25043224_25045524_25045773_25045850_25045962_25046100_25046220_25046740_25046949_25047648_25047830_25048339_25048504_25049079_25049225_25053150_25053383_25054437_25054562_25054726_25054941_25055158_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ENSMUSG00000045039.10_12	chr7	+	6015	21	ISM	ENSMUSG00000045039.10	ENSMUST00000128119.2	10040	41	25172	9	-3645	-6	3prime_fragment	FALSE	canonical	3	17	junction_2	7.37631344236401	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACTTGTGCATCGTAA	NA	False	NA	2	True	AATAAA	-7	NA	25041760	25065333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25041849_25041944_25042195_25043090_25043224_25045524_25045773_25045850_25045962_25046100_25046220_25046740_25046949_25047648_25047830_25048339_25048504_25049079_25049225_25053150_25053383_25054437_25054562_25054726_25054941_25055158_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ENSMUSG00000045039.10_13	chr7	+	5852	20	ISM	ENSMUSG00000045039.10	ENSMUST00000128119.2	10040	41	25434	6	-3383	-3	3prime_fragment	FALSE	canonical	3	17	junction_1	7.04909573580334	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTGCATCGTAACTT	NA	False	NA	5	True	AATAAA	-10	NA	25042022	25065336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25042195_25043090_25043224_25045524_25045773_25045850_25045962_25046100_25046220_25046740_25046949_25047648_25047830_25048339_25048504_25049079_25049225_25053150_25053383_25054437_25054562_25054726_25054941_25055158_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ENSMUSG00000045039.10_17	chr7	+	5020	15	ISM	ENSMUSG00000045039.10	ENSMUST00000153077.2	5669	18	1384	3	1384	-3	3prime_fragment	FALSE	canonical	3	20	junction_9	6.52311431818907	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTGCATCGTAACTT	NA	False	NA	5	True	AATAAA	-10	NA	25046789	25065336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25046949_25047648_25047830_25048339_25048504_25049079_25049225_25053150_25053383_25054437_25054562_25054726_25054941_25055158_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ENSMUSG00000045039.10_21	chr7	+	4078	10	ISM	ENSMUSG00000045039.10	ENSMUST00000153077.2	5669	18	9090	6	9090	-6	3prime_fragment	FALSE	canonical	3	20	junction_4	7.54901677842801	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACTTGTGCATCGTAA	NA	False	NA	2	True	AATAAA	-7	NA	25054495	25065333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25054562_25054726_25054941_25055158_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ENSMUSG00000045039.10_22	chr7	+	3718	8	ISM	ENSMUSG00000045039.10	ENSMUST00000153077.2	5669	18	9836	3	9836	-3	3prime_fragment	FALSE	canonical	3	20	junction_2	7.97956573929654	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTGCATCGTAACTT	NA	False	NA	5	True	AATAAA	-10	NA	25055241	25065336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ENSMUSG00000045039.10_23	chr7	+	3437	7	ISM	ENSMUSG00000045039.10	ENSMUST00000153077.2	5669	18	12413	3	12413	-3	3prime_fragment	FALSE	canonical	3	20	junction_1	8.59101597923991	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTGCATCGTAACTT	NA	False	NA	5	True	AATAAA	-10	NA	25057818	25065336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ENSMUSG00000045039.10_25	chr7	+	3210	5	ISM	ENSMUSG00000045039.10	ENSMUST00000153077.2	5669	18	13081	3	13081	-3	3prime_fragment	FALSE	canonical	3	29	junction_1	6.60965203320114	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTGCATCGTAACTT	NA	False	NA	5	True	AATAAA	-10	NA	25058486	25065336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ENSMUSG00000045039.10_26	chr7	+	2678	2	ISM	ENSMUSG00000045039.10	ENSMUST00000153077.2	5669	18	14718	3	14718	-3	3prime_fragment	FALSE	canonical	3	36	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTGCATCGTAACTT	NA	False	NA	5	True	AATAAA	-10	NA	25060123	25065336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25060212_25062746
ENSMUSG00000045039.10_27	chr7	+	1782	1	ISM	ENSMUSG00000045039.10	ENSMUST00000128119.2	10040	41	46966	6	18149	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTGCATCGTAACTT	NA	False	NA	5	True	AATAAA	-10	NA	25063554	25065336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25063600_25065300
ENSMUSG00000045039.10_36	chr7	+	3865	9	ISM	ENSMUSG00000045039.10	ENSMUST00000153077.2	5669	18	9471	3	9471	-3	3prime_fragment	FALSE	canonical	3	20	junction_3	7.77415590273311	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTGCATCGTAACTT	NA	False	NA	5	True	AATAAA	-10	NA	25054876	25065336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25054941_25055158_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ENSMUSG00000045039.10_6	chr7	+	8419	35	ISM	ENSMUSG00000045039.10	ENSMUST00000128119.2	10040	41	13550	6	13550	-3	3prime_fragment	FALSE	canonical	1	8	junction_3	8.95915375390774	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTGCATCGTAACTT	NA	False	NA	5	True	AATAAA	-10	NA	25030138	25065336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25030257_25030438_25030562_25033182_25033338_25033553_25033674_25033990_25034136_25034216_25034381_25037198_25037400_25037783_25037985_25038889_25039127_25039643_25039763_25039841_25039974_25040057_25040172_25040396_25040646_25041122_25041323_25041637_25041849_25041944_25042195_25043090_25043224_25045524_25045773_25045850_25045962_25046100_25046220_25046740_25046949_25047648_25047830_25048339_25048504_25049079_25049225_25053150_25053383_25054437_25054562_25054726_25054941_25055158_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
ENSMUSG00000045045.8_0	chr19	-	3345	2	FSM	ENSMUSG00000045045.8	ENSMUST00000053597.3	3194	2	-149	-2	16	2	multi-exon	FALSE	canonical	3	59	junction_1	0	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCAGTGTTGGTTTTTCG	NA	False	NA	-5	True	AATAAA	-13	NA	4665679	4661817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4662667_4663183
ENSMUSG00000045045.8_1	chr19	-	2913	3	FSM	ENSMUSG00000045045.8	ENSMUST00000113822.3	2918	3	-2	7	-2	0	multi-exon	FALSE	canonical	3	22	junction_2	18.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTCAGTGTTGGTTTTT	NA	False	NA	-7	True	AATAAA	-11	NA	4665697	4661819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4662667_4663183_4664543_4664990
ENSMUSG00000045045.8_2	chr19	-	3356	1	NIC	ENSMUSG00000045045.8	novel	2918	3	NA	NA	361	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTTGGTTTTTCGTCTC	NA	False	NA	-1	True	AATAAA	-17	NA	4665169	4661813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4661800_4665200
ENSMUSG00000045053.3_0	chr17	-	4012	2	FSM	ENSMUSG00000045053.3	ENSMUST00000234613.2	3323	2	-144	-545	-144	545	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACACTCCTCCTGCCTCGT	NA	False	NA	NA	False	NA	NA	NA	83939468	83892840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_83895809_83938424
ENSMUSG00000045064.6_0	chr12	+	2354	3	FSM	ENSMUSG00000045064.6	ENSMUST00000059341.5	4482	3	109	2019	109	393	multi-exon	FALSE	canonical	1	1	junction_2	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGAAGAAGTGGCTGGT	NA	False	NA	NA	False	TTTAAA	-15	NA	85335473	85344113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_85335560_85336325_85337656_85343175
ENSMUSG00000045064.6_2	chr12	+	1962	2	ISM	ENSMUSG00000045064.6	ENSMUST00000059341.5	4482	3	99	7941	99	512	5prime_fragment	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAACAACTATAAAATG	NA	False	NA	NA	False	NA	NA	NA	85335463	85338191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_85335560_85336325
ENSMUSG00000045071.15_1	chr4	+	3700	4	FSM	ENSMUSG00000045071.15	ENSMUST00000070150.11	10856	4	13	7143	13	1257	multi-exon	FALSE	canonical	3	63	junction_2	17.7200451466693	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTGCACAAGTCTTTAAA	2	True	NA	10	True	ATTAAA	-17	NA	59626223	59754296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_59626492_59690143_59691339_59737561_59737735_59752232
ENSMUSG00000045071.15_13	chr4	+	3091	3	ISM	ENSMUSG00000045071.15	ENSMUST00000070150.11	10856	4	64268	7149	-710	1251	3prime_fragment	FALSE	canonical	3	63	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTCATATTGCACAAGTC	NA	False	NA	4	True	ATTAAA	-11	NA	59690478	59754290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_59691339_59737561_59737735_59752232
ENSMUSG00000045071.15_15	chr4	+	3049	1	ISM	ENSMUSG00000045071.15	ENSMUST00000070150.11	10856	4	127309	4871	20262	3529	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGTTTGGGAAAAAAATGTG	NA	False	NA	NA	False	CATAAA	-3	NA	59753519	59756568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_59753500_59756600
ENSMUSG00000045071.15_2	chr4	+	3224	3	FSM	ENSMUSG00000045071.15	ENSMUST00000052420.7	3205	3	-12	-7	-12	7	multi-exon	FALSE	canonical	2	5	junction_2	48.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTACTGTGGTGCTTAG	9	True	NA	NA	False	AATAAA	-18	NA	59626230	59721408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_59626492_59690143_59691339_59719640
ENSMUSG00000045071.15_4	chr4	+	3689	4	NNC	ENSMUSG00000045071.15	novel	10856	4	NA	NA	10	1253	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	38.1313519298752	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATATTGCACAAGTCTT	-1	True	NA	6	True	ATTAAA	-13	NA	59626220	59754292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_59626492_59690143_59691339_59737561_59737735_59752242
ENSMUSG00000045078.13_0	chr5	-	4482	17	NIC	ENSMUSG00000045078.13	novel	4474	17	NA	NA	-14	-1	combination_of_known_junctions	FALSE	canonical	3	58	junction_16	44.6192223150516	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGGCTCTGTTTGTCC	6116	False	NA	-2	True	AATAAA	-15	NA	143098763	142976648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076514_143078749_143078881_143084133_143084256_143098653
ENSMUSG00000045078.13_1	chr5	-	4654	17	FSM	ENSMUSG00000045078.13	ENSMUST00000200607.5	3704	17	-24	-926	-10	-1	multi-exon	FALSE	canonical	3	116	junction_14	28.9242005075335	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGGCTCTGTTTGTCC	6120	False	NA	-2	True	AATAAA	-15	NA	143098759	142976648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076685_143078749_143078881_143084133_143084261_143098653
ENSMUSG00000045078.13_10	chr5	-	3866	14	ISM	ENSMUSG00000045078.13	ENSMUST00000053498.13	4474	17	22489	1	-2678	-1	3prime_fragment	FALSE	canonical	3	179	junction_12	18.2383950295644	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGGCTCTGTTTGTCC	NA	False	NA	-2	True	AATAAA	-15	NA	143076260	142976648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874
ENSMUSG00000045078.13_3	chr5	-	834	1	ISM	ENSMUSG00000045078.13	ENSMUST00000053498.13	4474	17	121267	1	25047	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGGCTCTGTTTGTCC	NA	False	NA	-2	True	AATAAA	-15	NA	142977482	142976648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_142976600_142977500
ENSMUSG00000045078.13_4	chr5	-	4634	17	NIC	ENSMUSG00000045078.13	novel	3704	17	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	58	junction_16	45.1403626896152	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGGCTCTGTTTGTCC	6135	False	NA	-2	True	AATAAA	-15	NA	143098744	142976648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076685_143078749_143078881_143084133_143084256_143098653
ENSMUSG00000045078.13_5	chr5	-	4478	17	FSM	ENSMUSG00000045078.13	ENSMUST00000053498.13	4474	17	-6	2	-6	-2	multi-exon	FALSE	canonical	3	121	junction_14	28.015550927119	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGGCTCTGTTTGTC	6124	False	NA	-3	True	AATAAA	-14	NA	143098755	142976649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076514_143078749_143078881_143084133_143084261_143098653
ENSMUSG00000045087.9_0	chr9	-	1902	1	ISM	ENSMUSG00000045087.9	ENSMUST00000122088.2	2500	3	3623	7	3623	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAATTGTTTATTTATT	NA	False	NA	NA	False	TTTAAA	-4	NA	21156116	21154214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21154200_21156100
ENSMUSG00000045092.9_0	chr3	-	2875	2	FSM	ENSMUSG00000045092.9	ENSMUST00000055676.4	3046	2	165	6	165	-6	multi-exon	FALSE	canonical	3	24	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTCTTTTGTGAAGA	NA	False	NA	-5	True	AATAAA	-12	NA	115508556	115504087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_115506764_115508357
ENSMUSG00000045092.9_1	chr3	-	1566	1	ISM	ENSMUSG00000045092.9	ENSMUST00000055676.4	3046	2	3068	6	3068	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTCTTTTGTGAAGA	NA	False	NA	-5	True	AATAAA	-12	NA	115505653	115504087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_115504100_115505700
ENSMUSG00000045095.17_0	chr6	-	1606	1	ISM	ENSMUSG00000045095.17	ENSMUST00000089317.12	7209	24	605335	927	114552	-927	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAACCTTTTTATAAAACAC	NA	False	NA	NA	False	NA	NA	NA	93654968	93653362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_93653400_93655000
ENSMUSG00000045095.17_2	chr6	-	5881	22	NIC	ENSMUSG00000045095.17	novel	4598	23	NA	NA	20	-1197	combination_of_known_junctions	TRUE	canonical	0	0	junction_21	10.1806806503004	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTCTAGCTGTGGAGAA	2685	False	NA	NA	False	TATAAA	-15	NA	93890651	93653632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_93655984_93659932_93660072_93662534_93662679_93663557_93663619_93663762_93663857_93670988_93671193_93674174_93674469_93676596_93676790_93678270_93678363_93684984_93685202_93694220_93694253_93722414_93723036_93724172_93724356_93731994_93732088_93734635_93734746_93737688_93737747_93746488_93746525_93750587_93750671_93762425_93762628_93769327_93769535_93792686_93792807_93890304
ENSMUSG00000045095.17_21	chr6	-	6476	23	NNC	ENSMUSG00000045095.17	novel	7929	25	NA	NA	10	-1251	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	9.94821301283604	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAACAAAACAACTGT	NA	False	NA	NA	False	AATAGA	-10	NA	94260866	93653686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_93655984_93659932_93660072_93662534_93662679_93663557_93663619_93663762_93663857_93670988_93671193_93674174_93674469_93676596_93676790_93678270_93678363_93684984_93685202_93694220_93694253_93722414_93723036_93724172_93724356_93731994_93732088_93734635_93734746_93737688_93737747_93746488_93746525_93750587_93750671_93762425_93762628_93769327_93769535_93792686_93792807_93920184_93920304_94259989
ENSMUSG00000045095.17_41	chr6	-	1797	5	NNC	ENSMUSG00000045095.17	novel	3920	21	NA	NA	10	130	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	17.9774163883468	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCATTAAAATGATAAATT	NA	False	NA	NA	False	AATAAA	-15	NA	94260866	93762153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_93762628_93769327_93769535_93792686_93792807_93920184_93920304_94259989
ENSMUSG00000045095.17_56	chr6	-	900	1	ISM	ENSMUSG00000045095.17	ENSMUST00000089317.12	7209	24	604387	2581	113604	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTTTTTTTGAAAATTAT	NA	False	NA	-1	True	ATTAAA	-19	NA	93655916	93655016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_93655000_93655900
ENSMUSG00000045098.20_10	chr19	+	2899	11	ISM	ENSMUSG00000045098.20	ENSMUST00000113973.8	6130	13	746	9469	1	-2	internal_fragment	FALSE	canonical	3	50	junction_2	90.9419595126474	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTGTTTTCTTGAGTCT	NA	False	NA	54	True	AATAAA	-13	NA	3818166	3858833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_3818341_3832219_3832280_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224
ENSMUSG00000045098.20_11	chr19	+	4052	12	ISM	ENSMUSG00000045098.20	ENSMUST00000113973.8	6130	13	742	1627	-3	-13	3prime_fragment	FALSE	canonical	3	50	junction_2	95.0458784391225	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGATTATAAATAATAGT	NA	False	NA	NA	False	AATAAA	-3	NA	3818162	3866675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_3818341_3832219_3832280_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224_3857422_3864114
ENSMUSG00000045098.20_15	chr19	+	2558	10	FSM	ENSMUSG00000045098.20	ENSMUST00000237440.2	1721	10	24	-861	1	0	multi-exon	FALSE	canonical	3	50	junction_2	94.5832966226067	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGTGTCAGAGCCAAA	NA	False	NA	0	True	NA	NA	NA	3818169	3856324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3818341_3832219_3832280_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
ENSMUSG00000045098.20_24	chr19	+	5531	10	FSM	ENSMUSG00000045098.20	ENSMUST00000176262.8	3933	10	5	-1603	2	-11	multi-exon	FALSE	canonical	3	16	junction_3	99.7442408374885	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTAAAATGATCTGGTCA	NA	False	NA	NA	False	AATAAA	-6	NA	3818170	3868291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224_3857422_3864114
ENSMUSG00000045098.20_6	chr19	+	2496	9	FSM	ENSMUSG00000045098.20	ENSMUST00000005518.16	1283	9	52	-1265	1	-2	multi-exon	FALSE	canonical	3	249	junction_4	20.1242235875077	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAAAAGTGTCAGAGCCA	NA	False	NA	-2	True	NA	NA	NA	3818169	3856322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
ENSMUSG00000045098.20_63	chr19	+	1599	1	ISM	ENSMUSG00000045098.20	ENSMUST00000052699.13	3290	11	39810	0	2837	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAACTTTGTTTTCTTGA	5254	False	NA	50	True	AATAAA	-9	NA	3857230	3858829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_3857200_3858800
ENSMUSG00000045098.20_7	chr19	+	5611	11	ISM	ENSMUSG00000045098.20	ENSMUST00000113972.9	4159	12	739	-1900	-6	-11	3prime_fragment	FALSE	canonical	3	88	junction_10	64.0924332507356	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTAAAATGATCTGGTCA	NA	False	NA	NA	False	AATAAA	-6	NA	3818159	3868291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224_3857422_3864114
ENSMUSG00000045098.20_71	chr19	+	3012	1	ISM	ENSMUSG00000045098.20	ENSMUST00000113973.8	6130	13	47859	11	10886	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTAAAATGATCTGGTCA	NA	False	NA	NA	False	AATAAA	-6	NA	3865279	3868291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_3865300_3868300
ENSMUSG00000045098.20_8	chr19	+	2840	10	FSM	ENSMUSG00000045098.20	ENSMUST00000113970.8	2975	10	131	4	-2	2	multi-exon	FALSE	canonical	3	179	junction_9	36.6093828625975	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTTGTTTTCTTGAGT	NA	False	NA	52	True	AATAAA	-11	NA	3818163	3858831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224
ENSMUSG00000045100.12_0	chr6	+	1889	10	FSM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	7	26	5	-26	multi-exon	FALSE	canonical	3	22	junction_5	7.6610285226392	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATAAAAAGTAATACTTCC	NA	False	NA	NA	False	AATAAA	-10	NA	94477318	94581627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94553314_94553360_94569392_94569463_94575360_94575426_94576159_94576234_94580532
ENSMUSG00000045100.12_1	chr6	+	1855	9	NIC	ENSMUSG00000045100.12	novel	1922	10	NA	NA	0	-22	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	12.2983738762488	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTAATACTTCCTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	94477311	94581631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94569392_94569463_94575360_94575426_94576159_94576234_94580532
ENSMUSG00000045100.12_3	chr6	+	1354	4	ISM	ENSMUSG00000045100.12	ENSMUST00000203484.2	381	5	14176	-1068	14176	-22	3prime_fragment	FALSE	canonical	3	32	junction_2	2.44948974278318	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTAATACTTCCTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	94569346	94581631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_94569463_94575360_94575426_94576159_94576234_94580532
ENSMUSG00000045103.20_1	chrX	+	4501	17	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	247	junction_13	44.1996535619907	555	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAAATACCTATTGGT	NA	False	NA	10	True	AATAAA	-16	NA	84091923	84248645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
ENSMUSG00000045103.20_38	chrX	+	1804	1	ISM	ENSMUSG00000045103.20	ENSMUST00000114000.8	14910	79	2254335	1100	25302	2	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATACCTATTGGTTG	NA	False	NA	12	True	AATAAA	-18	NA	84246843	84248647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_84246800_84248600
ENSMUSG00000045106.13_0	chr2	+	3731	15	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	-8	106	combination_of_known_splicesites	FALSE	canonical	2	5	junction_10	15.1410039297267	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATTAAGAACAAAATAT	NA	False	NA	-19	True	NA	NA	NA	104716660	104830188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104775761_104775801_104803511_104803641_104804202_104804263_104805900_104806006_104815318_104815454_104820212_104820397_104821424_104822898_104824813_104824948_104829307
ENSMUSG00000045106.13_12	chr2	+	3923	16	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	1	130	combination_of_known_splicesites	FALSE	canonical	2	3	junction_6	16.078142512948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTTAAGTGCTGAATAT	NA	False	NA	5	True	ACTAAA	-22	NA	104716669	104830212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104781851_104781988_104782213_104782294_104803511_104803641_104804202_104804263_104805900_104806006_104815318_104815454_104820212_104820397_104821424_104822898_104824813_104824948_104829307
ENSMUSG00000045106.13_20	chr2	+	3816	16	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	35	130	combination_of_known_splicesites	FALSE	canonical	2	3	junction_6	14.3814695586601	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTTAAGTGCTGAATAT	NA	False	NA	5	True	ACTAAA	-22	NA	104716703	104830212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104781851_104781988_104782213_104782294_104803511_104803641_104804202_104804263_104805900_104806006_104811334_104811446_104815318_104815454_104821424_104822898_104824813_104824948_104829307
ENSMUSG00000045106.13_25	chr2	+	3674	15	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	-11	119	combination_of_known_splicesites	FALSE	canonical	3	13	junction_7	12.6517321553459	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATTAATTAACCTTAA	NA	False	NA	-6	True	ACTAAA	-11	NA	104716657	104830201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104775761_104775801_104803511_104803641_104804202_104804263_104805900_104806006_104811334_104811446_104815318_104815454_104821424_104822898_104824813_104824948_104829307
ENSMUSG00000045106.13_26	chr2	+	2402	7	ISM	ENSMUSG00000045106.13	ENSMUST00000111114.8	3944	18	-8	52510	-8	-4340	5prime_fragment	FALSE	canonical	3	21	junction_6	12.6809130410848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGCCATGTTTAGCTTCG	NA	False	NA	NA	False	AATAAA	-17	NA	104716660	104777572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104775761
ENSMUSG00000045106.13_33	chr2	+	4068	18	FSM	ENSMUSG00000045106.13	ENSMUST00000111114.8	3944	18	3	-127	3	127	multi-exon	FALSE	canonical	2	12	junction_15	13.2482289734989	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAACCTTAAGTGCTGAA	NA	False	NA	2	True	ACTAAA	-19	NA	104716671	104830209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104775761_104775801_104781851_104781988_104782213_104782294_104803511_104803641_104804202_104804263_104805900_104806006_104811334_104811446_104815318_104815454_104820212_104820397_104821424_104822898_104824813_104824948_104829307
ENSMUSG00000045106.13_36	chr2	+	3454	13	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	3	129	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	15.8815056660955	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACCTTAAGTGCTGAATA	NA	False	NA	4	True	ACTAAA	-21	NA	104716671	104830211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104775761_104775801_104803511_104803641_104804202_104804263_104815318_104815454_104821424_104822898_104824813_104824948_104829307
ENSMUSG00000045106.13_4	chr2	+	3796	16	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	1	106	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	16.2097364431244	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATTAAGAACAAAATAT	NA	False	NA	-19	True	NA	NA	NA	104716669	104830188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104781851_104781988_104782213_104782294_104803511_104803641_104804202_104804263_104805930_104806006_104811334_104811446_104815318_104815454_104821424_104822898_104824813_104824948_104829307
ENSMUSG00000045106.13_43	chr2	+	4023	17	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	12	130	combination_of_known_splicesites	FALSE	canonical	2	3	junction_6	14.7563545633737	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTTAAGTGCTGAATAT	NA	False	NA	5	True	ACTAAA	-22	NA	104716680	104830212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104781851_104781988_104782213_104782294_104803511_104803641_104804202_104804263_104805900_104806006_104811334_104811446_104815318_104815454_104820212_104820397_104821424_104822898_104824813_104824948_104829307
ENSMUSG00000045106.13_5	chr2	+	3886	17	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	1	127	combination_of_known_splicesites	FALSE	canonical	3	16	junction_8	12.7174830450054	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAACCTTAAGTGCTGAA	NA	False	NA	2	True	ACTAAA	-19	NA	104716669	104830209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104775761_104775801_104781851_104781988_104782213_104782294_104803511_104803641_104804202_104804263_104805900_104806006_104811334_104811446_104815318_104815454_104821424_104822898_104824813_104824948_104829307
ENSMUSG00000045106.13_6	chr2	+	3474	12	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	11	124	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	15.7941300948975	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATTAACCTTAAGTGCT	NA	False	NA	-1	True	ACTAAA	-16	NA	104716679	104830206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_104716839_104737885_104738044_104745002_104745075_104775761_104775801_104803511_104803641_104804202_104804263_104805900_104806006_104811334_104811446_104815318_104815454_104821424_104822898_104824813_104824948_104829307
ENSMUSG00000045106.13_8	chr2	+	3844	16	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	11	127	combination_of_known_splicesites	FALSE	canonical	2	12	junction_13	13.435276947896	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAACCTTAAGTGCTGAA	NA	False	NA	2	True	ACTAAA	-19	NA	104716679	104830209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104775761_104775801_104803511_104803641_104804202_104804263_104805900_104806006_104811334_104811446_104815318_104815454_104820212_104820397_104821424_104822898_104824813_104824948_104829307
ENSMUSG00000045107.6_0	chr14	-	248	1	ISM	ENSMUSG00000045107.6	ENSMUST00000059666.6	2315	2	5805	1495	5805	329	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGGAGGCTGGTTTG	NA	False	NA	NA	False	TATAAA	-7	NA	20127446	20127198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20127200_20127400
ENSMUSG00000045107.6_1	chr14	-	765	2	FSM	ENSMUSG00000045107.6	ENSMUST00000059666.6	2315	2	55	1495	55	329	multi-exon	FALSE	canonical	3	53	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGGAGGCTGGTTTG	5360	False	NA	NA	False	TATAAA	-7	NA	20133196	20127198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20127713_20132945
ENSMUSG00000045114.11_0	chr7	-	4259	1	NIC	ENSMUSG00000107068.2	novel	4373	3	NA	NA	954	-50	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCAGTTTTGAGCTGGAT	7409	False	NA	-84	True	NA	NA	NA	126618545	126614286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126614300_126618500
ENSMUSG00000045128.10_1	chr8	-	603	5	FSM	ENSMUSG00000045128.10	ENSMUST00000054220.10	1260	5	0	657	0	0	multi-exon	FALSE	canonical	3	16397	junction_4	7934.97659101777	4405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350056	71348022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71350002
ENSMUSG00000045128.10_3	chr8	-	272	3	ISM	ENSMUSG00000045128.10	ENSMUST00000212709.2	700	5	1335	-4	1335	0	3prime_fragment	FALSE	canonical	3	32872	junction_2	746.5	1985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71348592	71348022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71348152_71348243_71348354_71348559
ENSMUSG00000045136.7_10	chr13	-	1501	3	ISM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	1028	475	1028	-475	3prime_fragment	FALSE	canonical	3	476	junction_2	10	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACGGTGTCCTCTTTTCTTT	NA	False	NA	-2	True	CATAAA	-13	NA	34313309	34311205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_34312515_34312854_34312966_34313228
ENSMUSG00000045136.7_3	chr13	-	1382	2	ISM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	1410	475	1410	-475	3prime_fragment	FALSE	canonical	3	496	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACGGTGTCCTCTTTTCTTT	NA	False	NA	-2	True	CATAAA	-13	NA	34312927	34311205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_34312515_34312854
ENSMUSG00000045136.7_7	chr13	-	1697	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	10	475	10	-475	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACGGTGTCCTCTTTTCTTT	NA	False	NA	-2	True	CATAAA	-13	NA	34314327	34311205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
ENSMUSG00000045136.7_9	chr13	-	971	1	ISM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	2161	475	2161	-475	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACGGTGTCCTCTTTTCTTT	NA	False	NA	-2	True	CATAAA	-13	NA	34312176	34311205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_34311200_34312200
ENSMUSG00000045140.9_0	chr11	-	337	1	Genic_Genomic	ENSMUSG00000045140.9	novel	NA	NA	NA	NA	3546	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTGTCTGCATGTATT	NA	False	NA	8	True	TTTAAA	-17	NA	84767475	84767138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_84767100_84767500
ENSMUSG00000045140.9_1	chr11	-	2253	2	FSM	ENSMUSG00000045140.9	ENSMUST00000108080.3	1728	2	0	-525	0	-3	multi-exon	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATATTTTGTCTGCAT	NA	False	NA	3	True	TTTAAA	-12	NA	84771111	84767143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_84769339_84771053
ENSMUSG00000045140.9_2	chr11	-	1798	2	FSM	ENSMUSG00000045140.9	ENSMUST00000067058.3	2675	2	356	521	356	7	multi-exon	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTCATGGATGTTTAAT	NA	False	NA	NA	False	ATTAAA	-19	NA	84770665	84767661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_84769339_84770544
ENSMUSG00000045160.15_0	chr6	+	536	4	FSM	ENSMUSG00000045160.15	ENSMUST00000136501.2	2312	4	32	1744	-13	-4	multi-exon	FALSE	canonical	3	755	junction_1	124.478467571259	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACAGATGTGCCATGCTT	381	False	NA	22	True	ATTAAA	-22	NA	83326459	83335374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83326537_83328247_83328372_83330023_83330113_83335128
ENSMUSG00000045160.15_5	chr6	+	460	3	FSM	ENSMUSG00000045160.15	ENSMUST00000055875.14	709	3	225	24	225	-4	multi-exon	FALSE	canonical	3	998	junction_1	19	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACAGATGTGCCATGCTT	500	False	NA	22	True	ATTAAA	-22	NA	83328246	83335374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83328372_83330023_83330113_83335128
ENSMUSG00000045165.7_2	chr7	+	1859	2	FSM	ENSMUSG00000045165.7	ENSMUST00000056288.7	1932	2	65	8	0	-8	multi-exon	FALSE	canonical	3	90	junction_1	0	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGAATCCTTTTTGTAT	NA	False	NA	-2	True	NA	NA	NA	126690595	126693150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126690645_126691340
ENSMUSG00000045165.7_3	chr7	+	1503	1	ISM	ENSMUSG00000045165.7	ENSMUST00000056288.7	1932	2	1117	8	1052	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGAATCCTTTTTGTAT	NA	False	NA	-2	True	NA	NA	NA	126691647	126693150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_126691600_126693200
ENSMUSG00000045176.4_0	chr11	+	1814	1	FSM	ENSMUSG00000045176.4	ENSMUST00000051888.4	1862	1	46	2	46	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTGAGCCTGTTTTTTT	NA	False	NA	15	True	ATTAAA	-15	NA	68950588	68952402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68950600_68952400
ENSMUSG00000045179.10_0	chrX	-	2068	1	FSM	ENSMUSG00000045179.10	ENSMUST00000135107.4	2065	1	-9	6	-9	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATATGCTGGAGTCCTGA	NA	False	NA	-6	True	AATAAA	-9	NA	59937045	59934977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_59935000_59937000
ENSMUSG00000045180.14_1	chrX	-	7183	10	FSM	ENSMUSG00000045180.14	ENSMUST00000101141.9	7494	10	-180	491	-176	-8	multi-exon	FALSE	canonical	3	27	junction_9	12.3987255418341	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAAGTAGAATGTCTT	NA	False	NA	-10	True	AATAAA	-13	NA	151552637	151392995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_151395791_151396390_151396664_151400188_151400352_151401896_151402443_151406121_151406332_151440419_151440521_151442259_151444715_151456527_151456660_151478635_151478788_151552281
ENSMUSG00000045180.14_18	chrX	-	3913	5	ISM	ENSMUSG00000045180.14	ENSMUST00000062317.5	6997	10	146204	8	20663	-8	3prime_fragment	FALSE	canonical	3	58	junction_2	4.02336923485777	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAAGTAGAATGTCTT	8304	False	NA	-10	True	AATAAA	-13	NA	151406257	151392995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_151395791_151396390_151396664_151400188_151400352_151401896_151402443_151406121
ENSMUSG00000045180.14_19	chrX	-	4056	6	NIC	ENSMUSG00000045180.14	novel	4338	6	NA	NA	81	-8	combination_of_known_junctions	FALSE	canonical	2	4	junction_5	23.7739353073907	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAAGTAGAATGTCTT	NA	False	NA	-10	True	AATAAA	-13	NA	151427458	151392995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_151395791_151396390_151396664_151400188_151400352_151401896_151402443_151406121_151406332_151427389
ENSMUSG00000045180.14_23	chrX	-	7179	10	FSM	ENSMUSG00000045180.14	ENSMUST00000062317.5	6997	10	-190	8	-190	-8	multi-exon	FALSE	canonical	3	14	junction_5	17.4384278371675	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAAGTAGAATGTCTT	NA	False	NA	-10	True	AATAAA	-13	NA	151552651	151392995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_151395791_151396390_151396664_151400188_151400352_151401896_151402443_151406121_151406314_151440419_151440521_151442259_151444715_151456527_151456660_151478635_151478788_151552281
ENSMUSG00000045180.14_3	chrX	-	1987	1	ISM	ENSMUSG00000045180.14	ENSMUST00000101141.9	7494	10	157477	489	31940	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAGTAGAATGTCTTTA	NA	False	NA	-8	True	AATAAA	-15	NA	151394980	151392993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_151393000_151395000
ENSMUSG00000045180.14_4	chrX	-	2965	2	ISM	ENSMUSG00000045180.14	ENSMUST00000137217.8	4338	6	30979	8	30360	-8	3prime_fragment	FALSE	canonical	3	63	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAAGTAGAATGTCTT	NA	False	NA	-10	True	AATAAA	-13	NA	151396560	151392995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_151395791_151396390
ENSMUSG00000045180.14_6	chrX	-	4332	6	NIC	ENSMUSG00000045180.14	novel	7494	10	NA	NA	-44	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	25.3566559309385	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGTAGAATGTCTTTAT	NA	False	NA	-7	True	AATAAA	-16	NA	151427150	151392992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_151395791_151396390_151396664_151400188_151400352_151401896_151402443_151406121_151406332_151426808
ENSMUSG00000045180.14_7	chrX	-	3459	4	ISM	ENSMUSG00000045180.14	ENSMUST00000137217.8	4338	6	25415	8	24796	-8	3prime_fragment	FALSE	canonical	3	58	junction_2	4.49691252107735	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAAGTAGAATGTCTT	NA	False	NA	-10	True	AATAAA	-13	NA	151402124	151392995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_151395791_151396390_151396664_151400188_151400352_151401896
ENSMUSG00000045180.14_9	chrX	-	5034	7	ISM	ENSMUSG00000045180.14	ENSMUST00000101141.9	7494	10	109252	491	13031	-8	3prime_fragment	TRUE	canonical	3	44	junction_5	7.67571929311297	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAAGTAGAATGTCTT	NA	False	NA	-10	True	AATAAA	-13	NA	151443205	151392995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_151395791_151396390_151396664_151400188_151400352_151401896_151402443_151406121_151406332_151440419_151440521_151442259
ENSMUSG00000045193.14_2	chr10	+	1255	7	FSM	ENSMUSG00000045193.14	ENSMUST00000105365.9	1321	7	62	4	0	-4	multi-exon	FALSE	canonical	3	285	junction_6	33.736314097555	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATCTCGCTCTGACCATT	6191	False	NA	NA	False	ATTAAA	-14	NA	80003673	80007485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80006815
ENSMUSG00000045193.14_3	chr10	+	832	8	FSM	ENSMUSG00000045193.14	ENSMUST00000054666.7	834	8	0	2	0	-2	multi-exon	FALSE	canonical	3	40	junction_6	141.847863313236	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCCCGACTCTGTGGCTT	6191	False	NA	NA	False	AATAAA	-15	NA	80003673	80008618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80008247_80008347_80008470
ENSMUSG00000045193.14_5	chr10	+	1469	6	FSM	ENSMUSG00000045193.14	ENSMUST00000140774.2	912	6	-46	-511	0	-7	multi-exon	FALSE	canonical	3	335	junction_5	19.6936538001459	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATCTCGCTCTGACC	6191	False	NA	NA	False	ATTAAA	-11	NA	80003673	80007482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527
ENSMUSG00000045193.14_7	chr10	+	2481	7	NIC	ENSMUSG00000045193.14	novel	834	8	NA	NA	0	-2	intron_retention	FALSE	canonical	3	60	junction_6	113.828330783197	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCCCGACTCTGTGGCTT	6191	False	NA	NA	False	AATAAA	-15	NA	80003673	80008618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80008347_80008470
ENSMUSG00000045205.17_1	chr4	-	6738	19	FSM	ENSMUSG00000045205.17	ENSMUST00000084892.12	6754	19	8	8	8	-8	multi-exon	FALSE	canonical	3	48	junction_13	8.17176711475418	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTCTTTAACTCGTAC	-2	True	NA	-17	True	AATAAA	-16	NA	11322129	11261322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_11265943_11267612_11267772_11273006_11273140_11276863_11276947_11277928_11277986_11281003_11281125_11285053_11285174_11287474_11287634_11289669_11289744_11290190_11290290_11290390_11290523_11292553_11292689_11295935_11296060_11303311_11303458_11303946_11304069_11304299_11304391_11309365_11309491_11317072_11317181_11321999
ENSMUSG00000045205.17_7	chr4	-	2369	1	ISM	ENSMUSG00000045205.17	ENSMUST00000139385.8	5954	13	39676	2	39676	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTAACTCGTACTTGATC	NA	False	NA	-11	True	AATAAA	-22	NA	11263685	11261316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_11261300_11263700
ENSMUSG00000045210.9_0	chr1	-	3695	1	ISM	ENSMUSG00000045210.9	ENSMUST00000057438.7	9749	3	24149	1917	24149	-1917	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTATTTGCTTGTATCAA	4904	False	NA	-6	True	NA	NA	NA	9794458	9790763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_9790800_9794500
ENSMUSG00000045210.9_1	chr1	-	5184	3	FSM	ENSMUSG00000045210.9	ENSMUST00000057438.7	9749	3	-12	4577	-12	-4577	multi-exon	FALSE	canonical	3	96	junction_2	5	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAATCTCTTCCTGTTC	NA	False	NA	NA	False	AATACA	-14	NA	9818619	9793423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_9795576_9807190_9807278_9815674
ENSMUSG00000045211.6_0	chr14	+	1417	3	FSM	ENSMUSG00000045211.6	ENSMUST00000089049.4	3926	3	217	2292	7	-2	multi-exon	FALSE	canonical	3	39	junction_1	3	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCCTGCTTGCCTAAA	NA	False	NA	NA	False	AGTAAA	-13	NA	70815293	70817719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_70815551_70816351_70816566_70816773
ENSMUSG00000045215.18_1	chr18	+	3497	1	ISM	ENSMUSG00000045215.18	ENSMUST00000239326.2	11353	12	182248	25	181405	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAGAAATGAAAACA	NA	False	NA	NA	False	NA	NA	NA	22659550	22663047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_22659600_22663000
ENSMUSG00000045216.8_0	chr1	+	3733	2	FSM	ENSMUSG00000045216.8	ENSMUST00000088174.4	3719	2	-17	3	-17	-3	multi-exon	FALSE	canonical	3	381	junction_1	0	1041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTGTGCTGTGGTCTG	1746	False	NA	17	True	AATAAA	-12	NA	36107463	36145524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_36108266_36142593
ENSMUSG00000045216.8_8	chr1	+	2226	1	FSM	ENSMUSG00000045216.8	ENSMUST00000194670.2	3291	1	2528	-1463	2528	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTGTGCTGTGGTCTG	NA	False	NA	17	True	AATAAA	-12	NA	36143298	36145524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_36143300_36145500
ENSMUSG00000045232.5_0	chr8	-	888	2	FSM	ENSMUSG00000045232.5	ENSMUST00000061923.5	634	2	11	-265	11	265	multi-exon	FALSE	canonical	3	87	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTTGCACGCGTGCGTA	2859	False	NA	-6	True	AATAAA	-13	NA	84771618	84769292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84769961_84771398
ENSMUSG00000045237.6_0	chrX	+	1090	3	FSM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	4	0	4	0	multi-exon	FALSE	canonical	3	343	junction_1	1.5	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	14	True	AATAAA	-21	NA	69429486	69433023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_69429758_69431499_69431773_69432477
ENSMUSG00000045246.12_0	chr8	-	2890	2	ISM	ENSMUSG00000045246.12	ENSMUST00000061828.10	3806	3	2464	7	2130	-7	3prime_fragment	FALSE	canonical	2	3	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTTGCTCCAGGCTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	120359955	120350599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_120353159_120359624
ENSMUSG00000045248.7_0	chr8	-	2972	3	FSM	ENSMUSG00000045248.7	ENSMUST00000058534.7	2997	3	23	2	23	-2	multi-exon	FALSE	canonical	3	122	junction_2	2.5	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACCAGTTTTGGAATCA	3640	False	NA	-7	True	AATAAA	-13	NA	73302091	73248406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_73250951_73251366_73251442_73301738
ENSMUSG00000045248.7_1	chr8	-	1926	1	ISM	ENSMUSG00000045248.7	ENSMUST00000058534.7	2997	3	51782	2	51782	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACCAGTTTTGGAATCA	NA	False	NA	-7	True	AATAAA	-13	NA	73250332	73248406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_73248400_73250300
ENSMUSG00000045251.14_1	chr7	-	1292	2	FSM	ENSMUSG00000045251.14	ENSMUST00000136123.8	1298	2	6	0	6	0	multi-exon	FALSE	canonical	3	34	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6931	False	NA	-4	True	ATTAAA	-17	NA	127021193	127018138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127018814_127020576
ENSMUSG00000045251.14_10	chr7	-	1402	3	ISM	ENSMUSG00000045251.14	ENSMUST00000148483.8	1302	4	2	2	2	0	intron_retention	FALSE	canonical	3	32	junction_2	11.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	1	True	NA	-6	True	ATTAAA	-15	NA	127021209	127018140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_127018814_127019181_127019278_127020576
ENSMUSG00000045251.14_12	chr7	-	2706	2	FSM	ENSMUSG00000045251.14	ENSMUST00000135886.2	2732	2	26	0	-3	0	multi-exon	FALSE	canonical	3	55	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	-4	True	NA	-6	True	ATTAAA	-15	NA	127021214	127018140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127018814_127019181
ENSMUSG00000045251.14_13	chr7	-	1277	4	NNC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	22.553639765383	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAGTGTTTTGTGTTA	-5	True	NA	-7	True	ATTAAA	-14	NA	127021215	127018141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020820
ENSMUSG00000045251.14_2	chr7	-	1103	4	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	9.62635271879577	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	6924	False	NA	-6	True	ATTAAA	-15	NA	127021200	127018140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020980
ENSMUSG00000045251.14_3	chr7	-	1197	3	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	12.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	6920	False	NA	-6	True	ATTAAA	-15	NA	127021204	127018140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127018814_127020576_127020691_127020794
ENSMUSG00000045251.14_4	chr7	-	1011	3	FSM	ENSMUSG00000045251.14	ENSMUST00000106300.2	1015	3	2	2	2	0	multi-exon	FALSE	canonical	3	34	junction_1	2.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	6920	False	NA	-6	True	ATTAAA	-15	NA	127021204	127018140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127018814_127020576_127020691_127020980
ENSMUSG00000045251.14_6	chr7	-	632	1	ISM	ENSMUSG00000045251.14	ENSMUST00000136123.8	1298	2	2428	1	2251	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGTGTTTTGTGTTAAG	9353	False	NA	-5	True	ATTAAA	-16	NA	127018771	127018139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_127018100_127018800
ENSMUSG00000045251.14_7	chr7	-	1051	2	NNC	ENSMUSG00000045251.14	novel	1298	2	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6928	False	NA	-4	True	ATTAAA	-17	NA	127021196	127018138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_127018814_127020820
ENSMUSG00000045251.14_8	chr7	-	875	2	FSM	ENSMUSG00000045251.14	ENSMUST00000126756.2	338	2	-158	-379	19	0	multi-exon	FALSE	canonical	3	21	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	-3	True	NA	-4	True	ATTAAA	-17	NA	127021180	127018138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127018814_127020980
ENSMUSG00000045252.12_0	chr7	+	3070	2	FSM	ENSMUSG00000045252.12	ENSMUST00000179556.2	4140	2	56	1014	-23	-2	multi-exon	FALSE	canonical	3	224	junction_1	0	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGCTTTTTGTCAGGCCT	5011	False	NA	20	True	AATAAA	-16	NA	24776685	24781903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24776812_24778959
ENSMUSG00000045252.12_1	chr7	+	3162	2	FSM	ENSMUSG00000045252.12	ENSMUST00000053410.11	3145	2	-18	1	-18	-1	multi-exon	FALSE	canonical	3	92	junction_1	0	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTTTTGTCAGGCCTA	5016	False	NA	21	True	AATAAA	-17	NA	24776690	24781904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24776908_24778959
ENSMUSG00000045252.12_6	chr7	+	2410	1	ISM	ENSMUSG00000045252.12	ENSMUST00000179556.2	4140	2	2865	1013	2786	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTTTTGTCAGGCCTA	1078	False	NA	21	True	AATAAA	-17	NA	24779494	24781904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24779500_24781900
ENSMUSG00000045257.11_0	chr17	+	620	5	FSM	ENSMUSG00000045257.11	ENSMUST00000061703.10	644	5	24	0	24	0	multi-exon	FALSE	canonical	3	50	junction_3	10.1242283656583	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTTTTTGAATTATGTA	NA	False	NA	12	True	AATAAA	-15	NA	80597664	80604902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_80597767_80599753_80599808_80601898_80602006_80602941_80603079_80604682
ENSMUSG00000045259.5_0	chr1	-	1282	4	FSM	ENSMUSG00000045259.5	ENSMUST00000061878.5	1558	4	2	274	2	-274	multi-exon	FALSE	canonical	3	17	junction_1	1.88561808316413	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGAGTTTTGTCTCTGAAT	7873	False	NA	NA	False	ATTAAA	-9	NA	171188364	171186287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171186549_171187022_171187222_171187309_171187470_171187702
ENSMUSG00000045259.5_1	chr1	-	1519	3	ISM	ENSMUSG00000045259.5	ENSMUST00000061878.5	1558	4	-2	274	-2	-274	intron_retention	FALSE	canonical	3	17	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGAGTTTTGTCTCTGAAT	7869	False	NA	NA	False	ATTAAA	-9	NA	171188368	171186287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_171186549_171187022_171187222_171187309
ENSMUSG00000045268.14_0	chr4	-	2651	2	FSM	ENSMUSG00000045268.14	ENSMUST00000052715.10	2341	2	-317	7	22	-4	multi-exon	FALSE	canonical	1	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAACCTGTGTACTTAT	NA	False	NA	-5	True	AGTAAA	-12	NA	119031370	119026716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119028240_119030242
ENSMUSG00000045268.14_1	chr4	-	1576	2	FSM	ENSMUSG00000045268.14	ENSMUST00000106355.5	1588	2	1	11	1	-8	multi-exon	FALSE	canonical	3	13	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAAAAGAACCTGTGTAC	NA	False	NA	-9	True	AGTAAA	-8	NA	119031391	119026720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119028240_119031334
ENSMUSG00000045268.14_2	chr4	-	2027	2	FSM	ENSMUSG00000045268.14	ENSMUST00000179290.8	1721	2	-310	4	29	-4	multi-exon	FALSE	canonical	1	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAACCTGTGTACTTAT	NA	False	NA	-5	True	AGTAAA	-12	NA	119031363	119026716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119028240_119030859
ENSMUSG00000045273.9_0	chr13	-	1204	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	28	19	28	-19	multi-exon	TRUE	canonical	3	285	junction_6	26.2865816530031	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAACTAAAAAAAGAATAC	NA	False	NA	-18	True	AATAAA	-22	NA	100912379	100896200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
ENSMUSG00000045273.9_1	chr13	-	1047	8	NIC	ENSMUSG00000045273.9	novel	1251	9	NA	NA	28	-12	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	115.35888985851	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAATACTTGCAGG	NA	False	NA	-11	True	AATAAA	-29	NA	100912379	100896193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_100896703_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
ENSMUSG00000045273.9_5	chr13	-	1577	8	NIC	ENSMUSG00000045273.9	novel	1251	9	NA	NA	28	-31	intron_retention	FALSE	canonical	3	316	junction_6	18.9413703359625	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTACTGCATTATTAACTA	NA	False	NA	-30	True	AATAAA	-10	NA	100912379	100896212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100908212_100909233_100909290_100912194
ENSMUSG00000045281.6_0	chr15	-	2014	2	FSM	ENSMUSG00000045281.6	ENSMUST00000064166.5	2144	2	122	8	122	-8	multi-exon	FALSE	canonical	2	16	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCAAACTCAGGGCCAAC	NA	False	NA	NA	False	AATAAA	-11	NA	73579232	73566460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_73568412_73579169
ENSMUSG00000045282.8_0	chr7	-	1651	2	FSM	ENSMUSG00000045282.8	ENSMUST00000205360.2	1344	2	-307	0	-12	0	multi-exon	FALSE	canonical	2	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCAGTGTCACCATTAT	1884	False	NA	NA	False	AGTAAA	-12	NA	4633493	4631040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4631753_4632554
ENSMUSG00000045284.10_0	chrX	-	3470	2	FSM	ENSMUSG00000045284.10	ENSMUST00000060481.9	3509	2	38	1	2	-1	multi-exon	FALSE	canonical	3	37	junction_1	0	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCACCTCTGTTTTTCTTT	NA	False	NA	-6	True	AATAAA	-39	NA	43879036	43875447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_43877171_43877289
ENSMUSG00000045284.10_1	chrX	-	3490	2	FSM	ENSMUSG00000045284.10	ENSMUST00000115056.2	3495	2	2	3	2	-3	multi-exon	FALSE	canonical	3	16	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCACCTCTGTTTTTCT	NA	False	NA	-8	True	AATAAA	-37	NA	43879036	43875449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_43877171_43877267
ENSMUSG00000045284.10_2	chrX	-	907	1	ISM	ENSMUSG00000045284.10	ENSMUST00000115056.2	3495	2	2664	21	2664	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAACCTTGTTCTGTGTT	NA	False	NA	-26	True	AATAAA	-19	NA	43876374	43875467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_43875500_43876400
ENSMUSG00000045287.7_0	chr11	+	3487	2	FSM	ENSMUSG00000045287.7	ENSMUST00000102514.4	3525	2	31	7	31	-7	multi-exon	FALSE	canonical	3	24	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGAACCCTGTTTTTTAT	NA	False	NA	1	True	AATAAA	-12	NA	75084639	75158588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75085121_75155582
ENSMUSG00000045287.7_2	chr11	+	2156	1	ISM	ENSMUSG00000045287.7	ENSMUST00000102514.4	3525	2	71824	7	71824	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGAACCCTGTTTTTTAT	NA	False	NA	1	True	AATAAA	-12	NA	75156432	75158588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_75156400_75158600
ENSMUSG00000045294.12_0	chr5	+	2688	5	FSM	ENSMUSG00000045294.12	ENSMUST00000059155.11	2697	5	2	7	2	-7	multi-exon	FALSE	canonical	3	1125	junction_2	41.7215471908701	2228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCAGCTGTTGTATTCC	NA	False	NA	7	True	ATTAAA	-6	NA	28276362	28283653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_28276794_28278544_28278670_28279479_28279647_28280059_28280160_28281788
ENSMUSG00000045294.12_35	chr5	+	1455	1	ISM	ENSMUSG00000045294.12	ENSMUST00000059155.11	2697	5	5838	7	2535	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCAGCTGTTGTATTCC	NA	False	NA	7	True	ATTAAA	-6	NA	28282198	28283653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_28282200_28283700
ENSMUSG00000045302.14_4	chr5	-	2007	9	FSM	ENSMUSG00000045302.14	ENSMUST00000074840.12	6300	9	101	4192	2	-2	multi-exon	TRUE	canonical	3	205	junction_7	28.1735691739616	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCCAGCAGTCCTCTTG	NA	False	NA	-10	True	AATAAA	-19	NA	31117604	31112388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
ENSMUSG00000045302.14_5	chr5	-	2293	8	NIC	ENSMUSG00000045302.14	novel	6300	9	NA	NA	2	-2	intron_retention	FALSE	canonical	3	234	junction_6	22.518926280272	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCCAGCAGTCCTCTTG	NA	False	NA	-10	True	AATAAA	-19	NA	31117604	31112388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116757_31117314
ENSMUSG00000045312.13_0	chr13	+	4452	4	FSM	ENSMUSG00000045312.13	ENSMUST00000054274.8	4348	4	-110	6	-110	-6	multi-exon	FALSE	canonical	3	77	junction_1	5.35412613473634	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGCATTCTTTCAAGTTT	2116	False	NA	3	True	ATTAAA	-12	NA	94194193	94331911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_94194415_94257284_94257344_94310530_94311147_94328355
ENSMUSG00000045312.13_1	chr13	+	4420	3	NIC	ENSMUSG00000045312.13	novel	4348	4	NA	NA	-137	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	41	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGCATTCTTTCAAGTTT	2089	False	NA	3	True	ATTAAA	-12	NA	94194166	94331911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_94194415_94310530_94311147_94328355
ENSMUSG00000045312.13_18	chr13	+	3858	2	FSM	ENSMUSG00000045312.13	ENSMUST00000121618.2	4209	2	345	6	345	-6	multi-exon	FALSE	canonical	3	82	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGCATTCTTTCAAGTTT	9376	False	NA	3	True	ATTAAA	-12	NA	94310844	94331911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_94311147_94328355
ENSMUSG00000045312.13_20	chr13	+	2994	1	ISM	ENSMUSG00000045312.13	ENSMUST00000054274.8	4348	4	134620	0	18424	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTTCAAGTTTGTTGGC	NA	False	NA	9	True	ATTAAA	-18	NA	94328923	94331917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_94328900_94331900
ENSMUSG00000045312.13_6	chr13	+	4609	5	NNC	ENSMUSG00000045312.13	novel	4348	4	NA	NA	-83	-6	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	37.0843632815773	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGCATTCTTTCAAGTTT	2143	False	NA	3	True	ATTAAA	-12	NA	94194220	94331911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_94194415_94257284_94257344_94271247_94271432_94310530_94311147_94328355
ENSMUSG00000045314.6_0	chr5	-	3860	1	FSM	ENSMUSG00000045314.6	ENSMUST00000061328.6	3900	1	-8	48	-8	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTTTTGTTTCATTGT	55	False	NA	-52	True	AATGAA	-15	NA	93192889	93189029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_93189000_93192900
ENSMUSG00000045316.6_0	chr17	-	1204	1	FSM	ENSMUSG00000045316.6	ENSMUST00000049642.6	1473	1	261	8	261	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAAGAGCACTTTCTT	NA	False	NA	-5	True	AATAAA	-16	NA	25069077	25067873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25067900_25069100
ENSMUSG00000045318.7_0	chr5	+	2703	1	FSM	ENSMUSG00000045318.7	ENSMUST00000049545.7	3445	1	735	7	735	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTAAGTGTCAGGTGCAT	NA	False	NA	NA	False	AATAAA	-8	NA	35436397	35439100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_35436400_35439100
ENSMUSG00000045319.14_0	chr2	-	1902	4	FSM	ENSMUSG00000045319.14	ENSMUST00000114942.9	4398	4	58	2438	-7	-20	multi-exon	FALSE	canonical	3	22	junction_3	5.90668171555645	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAATAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6134964	6104855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134852
ENSMUSG00000045319.14_1	chr2	-	2035	4	FSM	ENSMUSG00000045319.14	ENSMUST00000054254.12	2061	4	6	20	-1	-20	multi-exon	FALSE	canonical	1	2	junction_3	15.3260852434302	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAATAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6134951	6104855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134706
ENSMUSG00000045319.14_2	chr2	-	2104	5	FSM	ENSMUSG00000045319.14	ENSMUST00000126551.2	945	5	-14	-1145	-7	-20	multi-exon	FALSE	canonical	0	0	junction_3	17.007351351695	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAATAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6134964	6104855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134438_6134641_6134852
ENSMUSG00000045319.14_3	chr2	-	2277	4	ISM	ENSMUSG00000045319.14	ENSMUST00000126551.2	945	5	25	-1145	25	-20	intron_retention	FALSE	canonical	0	0	junction_3	16.2685791225499	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAATAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6134925	6104855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134438
ENSMUSG00000045319.14_7	chr2	-	1719	3	ISM	ENSMUSG00000045319.14	ENSMUST00000054254.12	2061	4	16104	20	16097	-20	3prime_fragment	FALSE	canonical	3	34	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAATAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6118853	6104855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_6106172_6107623_6107877_6118703
ENSMUSG00000045328.12_0	chr3	+	7745	46	FSM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	74	91	74	-91	multi-exon	FALSE	canonical	0	0	junction_28	46.2867818371455	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTTAATCTTTCCAGA	NA	False	NA	10	True	AATAAA	-12	NA	134918371	134979281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_134918476_134920864_134920957_134922092_134922183_134922306_134922426_134923013_134923134_134923793_134923876_134924234_134924303_134924384_134924451_134926040_134926093_134927988_134928077_134928930_134929061_134930717_134930838_134934517_134934677_134935808_134935966_134937125_134937215_134938657_134938826_134939488_134939564_134939731_134939852_134940593_134940717_134940826_134940984_134941217_134941373_134943263_134943579_134943687_134943961_134944075_134944232_134945517_134945710_134946708_134946868_134947823_134948115_134948237_134948394_134949360_134949640_134952247_134952407_134952577_134952863_134953098_134953387_134953830_134953990_134954142_134954425_134955416_134955576_134957182_134957444_134961207_134961310_134962237_134962457_134964952_134965148_134965739_134965944_134967279_134967508_134970068_134970182_134971671_134971770_134974700_134974882_134976434_134976722_134978911
ENSMUSG00000045328.12_66	chr3	+	4665	22	ISM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	27218	95	-2455	-95	3prime_fragment	FALSE	canonical	0	0	junction_4	57.1494043868237	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAAATTTTAATCTTTC	NA	False	NA	6	True	AATAAA	-8	NA	134945515	134979277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_134945710_134946708_134946868_134947823_134948115_134948237_134948394_134949360_134949640_134952247_134952407_134952577_134952863_134953098_134953387_134953830_134953990_134954142_134954425_134955416_134955576_134957182_134957444_134961207_134961310_134962237_134962457_134964952_134965148_134965739_134965944_134967279_134967508_134970068_134970182_134971671_134971770_134974700_134974882_134976434_134976722_134978911
ENSMUSG00000045328.12_70	chr3	+	4201	20	ISM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	29641	91	-32	-91	3prime_fragment	FALSE	canonical	0	0	junction_2	59.3637082862572	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTTAATCTTTCCAGA	NA	False	NA	10	True	AATAAA	-12	NA	134947938	134979281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_134948115_134948237_134948394_134949360_134949640_134952247_134952407_134952577_134952863_134953098_134953387_134953830_134953990_134954142_134954425_134955416_134955576_134957182_134957444_134961207_134961310_134962237_134962457_134964952_134965148_134965739_134965944_134967279_134967508_134970068_134970182_134971671_134971770_134974700_134974882_134976434_134976722_134978911
ENSMUSG00000045330.9_1	chrX	+	1927	4	FSM	ENSMUSG00000045330.9	ENSMUST00000051414.2	1970	4	39	4	39	-4	multi-exon	FALSE	canonical	1	3	junction_2	2.62466929133727	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCACCAAATCTTTTCTGT	NA	False	NA	NA	False	AATAAA	-17	NA	61330786	61335680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_61330842_61332956_61333046_61333767_61333841_61333970
ENSMUSG00000045333.16_1	chr8	-	4744	8	FSM	ENSMUSG00000045333.16	ENSMUST00000109655.9	4907	8	58	105	58	-103	multi-exon	FALSE	canonical	2	9	junction_7	4.95695759225642	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATAATCGGTTTCCGTGC	NA	False	NA	NA	False	ATTAAA	-12	NA	88686165	88388542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_88389136_88413056_88413173_88414583_88414716_88500194_88500280_88506826_88510042_88585911_88586113_88631116_88631177_88685823
ENSMUSG00000045333.16_2	chr8	-	2048	5	ISM	ENSMUSG00000045333.16	ENSMUST00000165770.9	4334	6	23216	8	22600	-6	3prime_fragment	FALSE	canonical	3	14	junction_3	3.93700393700591	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGCAACACTGCCTGGTT	NA	False	NA	NA	False	AATAAA	-14	NA	88507851	88388445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_88389136_88413056_88413173_88414583_88414716_88500194_88500280_88506826
ENSMUSG00000045348.17_0	chr5	-	3486	7	NIC	ENSMUSG00000045348.17	novel	3912	7	NA	NA	-53	29	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	6.97017455544216	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGCTGTCTTCTTATATC	8570	False	NA	-3	True	ATTAAA	-14	NA	137739417	137729145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_137730196_137731312_137731423_137731977_137732185_137733101_137734617_137736070_137736418_137737912_137738065_137739312
ENSMUSG00000045348.17_1	chr5	-	3175	5	ISM	ENSMUSG00000045348.17	ENSMUST00000212152.2	2499	6	1618	-799	1618	30	3prime_fragment	FALSE	canonical	3	27	junction_2	3.03108891324554	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTGTCTTCTTATATCC	5247	False	NA	-2	True	ATTAAA	-15	NA	137736362	137729144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137730196_137731312_137731423_137731977_137732185_137733101_137734617_137736070
ENSMUSG00000045348.17_4	chr5	-	3383	6	FSM	ENSMUSG00000045348.17	ENSMUST00000212152.2	2499	6	-86	-798	-86	29	multi-exon	FALSE	canonical	3	27	junction_2	2.8	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGCTGTCTTCTTATATC	9921	False	NA	-3	True	ATTAAA	-14	NA	137738066	137729145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137730196_137731312_137731423_137731977_137732185_137733101_137734617_137736070_137736418_137737912
ENSMUSG00000045348.17_5	chr5	-	2099	4	ISM	ENSMUSG00000045348.17	ENSMUST00000212152.2	2499	6	4147	-798	4147	29	3prime_fragment	FALSE	canonical	3	27	junction_2	2.05480466765633	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGCTGTCTTCTTATATC	7776	False	NA	-3	True	ATTAAA	-14	NA	137733833	137729145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137730196_137731312_137731423_137731977_137732185_137733101
ENSMUSG00000045349.16_0	chr4	+	2326	10	FSM	ENSMUSG00000045349.16	ENSMUST00000105824.8	3512	10	9	1177	-1	1044	multi-exon	FALSE	canonical	1	2	junction_6	2.55796987404919	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAAGAACAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	137977722	137987466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_137977820_137981141_137981270_137981583_137981665_137982008_137982084_137982862_137983010_137984023_137984276_137984425_137984601_137984915_137985025_137985479_137985640_137986364
ENSMUSG00000045349.16_1	chr4	+	3197	11	FSM	ENSMUSG00000045349.16	ENSMUST00000105823.2	3529	11	-33	365	8	-365	multi-exon	FALSE	canonical	1	1	junction_1	2.68328157299975	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGTCGTTTTCCTGTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	137977741	137988278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_137977820_137980922_137981001_137981141_137981270_137981583_137981665_137982008_137982084_137982862_137983010_137984023_137984276_137984425_137984601_137984915_137985025_137985479_137985640_137986364
ENSMUSG00000045349.16_2	chr4	+	1618	1	ISM	ENSMUSG00000045349.16	ENSMUST00000105824.8	3512	10	8947	365	2615	-365	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGTCGTTTTCCTGTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	137986660	137988278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137986700_137988300
ENSMUSG00000045374.19_0	chr11	-	1157	2	ISM	ENSMUSG00000045374.19	ENSMUST00000117392.9	6625	10	10164	5	5506	-3	3prime_fragment	FALSE	canonical	2	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGAGCTGAGTGAGGCTGT	9222	False	NA	-9	True	AATAAA	-16	NA	75335100	75331778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_75332916_75335080
ENSMUSG00000045374.19_2	chr11	-	6269	10	FSM	ENSMUSG00000045374.19	ENSMUST00000117392.9	6625	10	351	5	351	-3	multi-exon	FALSE	canonical	2	7	junction_2	4.57043640026736	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGAGCTGAGTGAGGCTGT	3439	False	NA	-9	True	AATAAA	-16	NA	75344913	75331778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_75332916_75335080_75335261_75335523_75335670_75336229_75336920_75338689_75338856_75338948_75339115_75339850_75340042_75340171_75340363_75340621_75340730_75341619
ENSMUSG00000045374.19_4	chr11	-	2540	7	ISM	ENSMUSG00000045374.19	ENSMUST00000117392.9	6625	10	5363	1	705	-1	3prime_fragment	TRUE	canonical	2	7	junction_2	4.3493294502333	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAGTGAGGCTGTGTTG	8451	False	NA	-5	True	AATAAA	-20	NA	75339901	75331774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_75332916_75335080_75335261_75335523_75335670_75336229_75336920_75338689_75338856_75338948_75339115_75339850
ENSMUSG00000045374.19_5	chr11	-	1693	4	ISM	ENSMUSG00000045374.19	ENSMUST00000117392.9	6625	10	8801	9	4143	-7	3prime_fragment	FALSE	canonical	2	7	junction_2	2.94392028877595	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCACGGAGCTGAGTGAGG	7859	False	NA	-13	True	AATAAA	-12	NA	75336463	75331782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_75332916_75335080_75335261_75335523_75335670_75336229
ENSMUSG00000045374.19_8	chr11	-	5212	6	ISM	ENSMUSG00000045374.19	ENSMUST00000173320.8	6908	10	48	6406	48	817	5prime_fragment	FALSE	canonical	2	11	junction_3	4.04969134626332	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGCTTTGTTTTTGTT	2857	False	NA	NA	False	NA	NA	NA	75345495	75338175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_75338856_75338948_75339115_75339850_75340042_75340171_75340363_75340621_75340730_75341619
ENSMUSG00000045377.6_0	chr11	-	840	2	FSM	ENSMUSG00000045377.6	ENSMUST00000050140.6	1582	2	0	742	0	-742	multi-exon	FALSE	canonical	3	22	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAATAAAAAAAAATTAT	NA	False	NA	NA	False	NA	NA	NA	69289060	69288086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69288708_69288841
ENSMUSG00000045378.6_0	chr17	-	979	3	FSM	ENSMUSG00000045378.6	ENSMUST00000051526.6	1019	3	36	4	36	-1	multi-exon	FALSE	canonical	3	18	junction_2	5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTCCTCTGTGTGTCTC	6249	False	NA	-2	True	AATAAA	-14	NA	29161202	29152961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29153781_29160215_29160344_29161170
ENSMUSG00000045378.6_1	chr17	-	1147	2	ISM	ENSMUSG00000045378.6	ENSMUST00000051526.6	1019	3	697	2	697	1	3prime_fragment	FALSE	canonical	3	28	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCTCTGTGTGTCTCTT	6910	False	NA	0	True	AATAAA	-16	NA	29160541	29152959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_29153781_29160215
ENSMUSG00000045378.6_2	chr17	-	1425	3	NNC	ENSMUSG00000045378.6	novel	1019	3	NA	NA	140	-4	intron_retention	FALSE	canonical	2	3	junction_2	12.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACAAGTCCTCTGTGTGT	6353	False	NA	-5	True	AATAAA	-11	NA	29161098	29152964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_29153781_29160215_29160344_29160617
ENSMUSG00000045382.7_0	chr1	-	1775	2	FSM	ENSMUSG00000045382.7	ENSMUST00000052172.7	1805	2	26	4	26	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTTGGCTGTGTGCTAT	NA	False	NA	NA	False	AATAAA	-15	NA	128520001	128515939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_128517639_128519925
ENSMUSG00000045382.7_1	chr1	-	1367	1	ISM	ENSMUSG00000045382.7	ENSMUST00000052172.7	1805	2	2721	4	2721	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTTGGCTGTGTGCTAT	NA	False	NA	NA	False	AATAAA	-15	NA	128517306	128515939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_128515900_128517300
ENSMUSG00000045394.10_0	chr17	+	1503	9	FSM	ENSMUSG00000045394.10	ENSMUST00000234623.2	1745	9	10	232	10	-209	multi-exon	FALSE	canonical	3	196	junction_4	21.0535032714273	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGAGTTTCTAAGTTTG	NA	False	NA	20	True	AATAAA	-28	NA	87944119	87958325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_87944323_87947323_87947432_87947715_87947957_87948861_87948928_87949529_87949594_87950969_87951072_87953564_87953769_87957041_87957087_87957855
ENSMUSG00000045394.10_4	chr17	+	1133	7	ISM	ENSMUSG00000045394.10	ENSMUST00000234623.2	1745	9	3668	229	3668	-206	3prime_fragment	FALSE	canonical	3	196	junction_2	17.7200451466693	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTTCTAAGTTTGTTT	NA	False	NA	23	True	AATAAA	-31	NA	87947777	87958328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_87947957_87948861_87948928_87949529_87949594_87950969_87951072_87953564_87953769_87957041_87957087_87957855
ENSMUSG00000045409.17_13	chr17	-	1486	5	FSM	ENSMUSG00000045409.17	ENSMUST00000113704.10	1465	5	-23	2	-23	0	multi-exon	FALSE	canonical	3	20	junction_1	19.421315609402	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATTCATTGTGTTTGTC	NA	False	NA	-2	True	ATTAAA	-18	NA	36582298	36573498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36574130_36574620_36574852_36578016_36578113_36579500_36579959_36582228
ENSMUSG00000045409.17_3	chr17	-	3040	7	FSM	ENSMUSG00000045409.17	ENSMUST00000113706.10	3204	7	162	2	-22	-2	multi-exon	FALSE	canonical	3	42	junction_1	8.81286937760152	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTCTTGAGTTGCGTGG	NA	False	NA	-10	True	NA	NA	NA	36582297	36569766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36571814_36572382_36572499_36573001_36573025_36574620_36574852_36578016_36578113_36579500_36579959_36582228
ENSMUSG00000045409.17_4	chr17	-	1081	1	ISM	ENSMUSG00000045409.17	ENSMUST00000173665.8	2974	7	8799	0	8742	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTGAGTTGCGTGGTA	NA	False	NA	-8	True	NA	NA	NA	36570845	36569764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_36569800_36570800
ENSMUSG00000045409.17_7	chr17	-	4692	6	ISM	ENSMUSG00000045409.17	ENSMUST00000113706.10	3204	7	780	2	596	-2	3prime_fragment	FALSE	canonical	3	42	junction_1	6.79411510058521	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTCTTGAGTTGCGTGG	NA	False	NA	-10	True	NA	NA	NA	36581679	36569766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_36571814_36572382_36572499_36573001_36573025_36574620_36574852_36578016_36578113_36579500
ENSMUSG00000045409.17_8	chr17	-	3058	7	NIC	ENSMUSG00000045409.17	novel	3204	7	NA	NA	-20	-6	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	19.4028921097403	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGATCTCTTGAGTTGC	NA	False	NA	-14	True	NA	NA	NA	36582295	36569770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36571838_36572382_36572499_36573001_36573025_36574620_36574852_36578016_36578113_36579500_36579959_36582228
ENSMUSG00000045410.19_0	chr13	-	1280	10	FSM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	36	2147	-4	-2140	multi-exon	FALSE	canonical	3	141	junction_4	13.8082101181387	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAACCTGCTTGACAGA	NA	False	NA	NA	False	ATTAAA	-17	NA	4659137	4642895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657389_4657558_4659083
ENSMUSG00000045410.19_1	chr13	-	1225	9	ISM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	1617	2147	1561	-2140	3prime_fragment	FALSE	canonical	3	141	junction_4	12.5797456254091	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAACCTGCTTGACAGA	NA	False	NA	NA	False	ATTAAA	-17	NA	4657556	4642895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657389
ENSMUSG00000045411.17_0	chr7	+	2239	8	NIC	ENSMUSG00000045411.17	novel	988	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	327.388554024301	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGGGTGTGCTGTTTG	NA	False	NA	18	True	ATTAAA	-18	NA	43896211	43901737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_43896248_43896661_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_1	chr7	+	3340	5	FSM	ENSMUSG00000045411.17	ENSMUST00000107950.9	3336	5	-1	-3	1	0	multi-exon	FALSE	canonical	3	709	junction_3	44.6933999601731	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_10	chr7	+	1897	6	FSM	ENSMUSG00000045411.17	ENSMUST00000137702.8	784	6	60	-1173	1	0	multi-exon	FALSE	canonical	3	108	junction_1	258.311904487579	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43896233_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_11	chr7	+	2091	7	FSM	ENSMUSG00000045411.17	ENSMUST00000084937.11	2092	7	1	0	1	0	multi-exon	FALSE	canonical	3	105	junction_1	279.849612391291	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43896248_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_12	chr7	+	2078	7	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	293.703743402921	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_43896248_43896674_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_13	chr7	+	1590	1	ISM	ENSMUSG00000045411.17	ENSMUST00000055858.14	1982	6	4001	7	758	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	17	True	ATTAAA	-17	NA	43900146	43901736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43900100_43901700
ENSMUSG00000045411.17_16	chr7	+	2213	8	NIC	ENSMUSG00000045411.17	novel	988	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	340.047415661344	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_43896233_43896674_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_17	chr7	+	4586	4	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	1	0	intron_retention	FALSE	canonical	3	709	junction_2	50.8745734352852	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_20	chr7	+	2228	8	FSM	ENSMUSG00000045411.17	ENSMUST00000146155.8	988	8	1	-1241	1	0	multi-exon	FALSE	canonical	0	0	junction_3	335.825391948779	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43896248_43896674_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_23	chr7	+	2226	8	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	337.565594532744	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_43896233_43896661_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_37	chr7	+	2076	7	FSM	ENSMUSG00000045411.17	ENSMUST00000188111.7	2131	7	53	2	1	0	multi-exon	FALSE	canonical	3	44	junction_1	296.487211641019	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43896233_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_6	chr7	+	1912	6	FSM	ENSMUSG00000045411.17	ENSMUST00000055858.14	1982	6	66	4	1	0	multi-exon	FALSE	canonical	3	217	junction_1	215.342889364845	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43896248_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_8	chr7	+	3148	6	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	1	0	intron_retention	FALSE	canonical	0	0	junction_1	301.065707113912	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045411.17_9	chr7	+	2061	7	FSM	ENSMUSG00000045411.17	ENSMUST00000185481.7	759	7	34	-1336	1	0	multi-exon	FALSE	canonical	3	30	junction_1	300.418411922808	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGGGTGTGCTGTTTG	NA	False	NA	18	True	ATTAAA	-18	NA	43896211	43901737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43896233_43896674_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045414.8_0	chr9	-	3939	3	FSM	ENSMUSG00000045414.8	ENSMUST00000113028.2	3950	3	1	10	1	-10	multi-exon	FALSE	canonical	3	138	junction_2	1.5	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACCATACTTTGGCTAC	NA	False	NA	-11	True	AATAAA	-10	NA	94420133	94399926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_94402700_94406444_94406749_94419271
ENSMUSG00000045414.8_3	chr9	-	1974	1	ISM	ENSMUSG00000045414.8	ENSMUST00000113028.2	3950	3	18241	3	18241	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTGGCTACTCTGTCT	NA	False	NA	-4	True	AATAAA	-17	NA	94401893	94399919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_94399900_94401900
ENSMUSG00000045427.14_0	chrX	+	2359	3	FSM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	65	2	-14	-2	multi-exon	FALSE	canonical	3	597	junction_2	148.5	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAAATCTTGCATAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	133501992	133507801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_133502083_133503440_133503512_133505603
ENSMUSG00000045427.14_15	chrX	+	1658	1	ISM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	4215	3	4108	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAAAAATCTTGCATAGT	NA	False	NA	NA	False	AATAAA	-16	NA	133506142	133507800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_133506100_133507800
ENSMUSG00000045427.14_2	chrX	+	2403	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	-39	0	-11	0	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133501995	133507803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
ENSMUSG00000045427.14_4	chrX	+	4446	2	ISM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	-37	2	-9	-2	intron_retention	FALSE	canonical	3	894	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAAATCTTGCATAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	133501997	133507801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_133502083_133503440
ENSMUSG00000045435.10_0	chr5	+	853	2	FSM	ENSMUSG00000045435.10	ENSMUST00000115259.3	1147	2	293	1	-23	-1	multi-exon	FALSE	canonical	3	465	junction_1	0	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTCCACATGCCTCTTA	NA	False	NA	7	True	AATAAA	-17	NA	21087481	21091867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_21087654_21091186
ENSMUSG00000045435.10_1	chr5	+	4307	1	FSM	ENSMUSG00000045435.10	ENSMUST00000196723.2	2178	1	56	-2185	56	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTCCACATGCCTCTTA	NA	False	NA	7	True	AATAAA	-17	NA	21087560	21091867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_21087600_21091900
ENSMUSG00000045438.13_0	chr5	-	764	3	FSM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	63	1634	-5	-1	multi-exon	FALSE	canonical	3	183	junction_2	1.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACTGTTTGGCTTTTGA	NA	False	NA	-19	True	AATACA	-13	NA	139330925	139323577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139324131_139328317_139328430_139330826
ENSMUSG00000045438.13_1	chr5	-	275	1	ISM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	7138	1632	1480	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTTTGGCTTTTGACA	1921	False	NA	-17	True	AATACA	-15	NA	139323850	139323575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_139323600_139323800
ENSMUSG00000045438.13_6	chr5	-	876	4	NIC	ENSMUSG00000045438.13	novel	696	3	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	85.6076320585184	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACTGTTTGGCTTTTGA	NA	False	NA	-19	True	AATACA	-13	NA	139330925	139323577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_139324131_139328317_139328430_139328875_139328988_139330826
ENSMUSG00000045441.6_1	chr6	-	8977	2	FSM	ENSMUSG00000045441.6	ENSMUST00000051065.6	8339	2	-25	-613	-25	613	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTGTGTATTCAGTGA	NA	False	NA	NA	False	AATAAA	-14	NA	59403304	59323597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_59332415_59403144
ENSMUSG00000045455.9_0	chr10	+	512	1	FSM	ENSMUSG00000045455.9	ENSMUST00000052902.9	613	1	18	83	18	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGAGAGTCATGTGTATT	NA	False	NA	NA	False	AATGAA	-25	NA	11484984	11485496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_11485000_11485500
ENSMUSG00000045464.6_0	chr2	+	1435	2	FSM	ENSMUSG00000045464.6	ENSMUST00000152313.2	2040	2	601	4	601	-4	multi-exon	FALSE	canonical	3	34	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACTCAAGAATCCTAAGT	NA	False	NA	NA	False	AATAAA	-12	NA	94237096	94242023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_94237312_94240803
ENSMUSG00000045466.19_0	chr6	+	2727	5	FSM	ENSMUSG00000045466.19	ENSMUST00000101445.11	2761	5	25	9	25	-6	multi-exon	FALSE	canonical	3	26	junction_2	2.77263412660235	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGTAAAGTCCCTGTCTT	9738	False	NA	9	True	AATAAA	-14	NA	47930348	47942225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_47930517_47932750_47933105_47934409_47934537_47939458_47939567_47940255
ENSMUSG00000045466.19_1	chr6	+	2855	5	FSM	ENSMUSG00000045466.19	ENSMUST00000140719.2	2823	5	-44	12	13	-12	multi-exon	FALSE	canonical	2	2	junction_3	12.1937483982572	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGACGTGTAAAGTCCC	9726	False	NA	3	True	AATAAA	-8	NA	47930336	47942219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_47930517_47932750_47933105_47934409_47934659_47939458_47939567_47940255
ENSMUSG00000045466.19_11	chr6	+	2330	4	ISM	ENSMUSG00000045466.19	ENSMUST00000101445.11	2761	5	2649	16	2592	-13	3prime_fragment	FALSE	canonical	3	26	junction_1	2.82842712474619	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAGACGTGTAAAGTCC	NA	False	NA	2	True	AATAAA	-7	NA	47932972	47942218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_47933105_47934409_47934537_47939458_47939567_47940255
ENSMUSG00000045466.19_6	chr6	+	1540	1	ISM	ENSMUSG00000045466.19	ENSMUST00000101445.11	2761	5	10365	6	10308	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAAGTCCCTGTCTTGCC	NA	False	NA	12	True	AATAAA	-17	NA	47940688	47942228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_47940700_47942200
ENSMUSG00000045467.14_11	chr7	+	2173	1	NIC	ENSMUSG00000045467.14	novel	3010	15	NA	NA	11259	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGCGTGCTGTACCTCCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	79908394	79910567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_79908400_79910600
ENSMUSG00000045467.14_8	chr7	+	1757	5	Fusion	ENSMUSG00000047084.9_ENSMUSG00000045467.14	novel	1709	2	NA	NA	-4474	-2	multi-exon	FALSE	canonical	0	0	junction_3	189.349379455017	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTTTGTTGCTTGGTTCT	NA	False	NA	11	True	AATAAA	-11	NA	79906488	79915120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_+_79906779_79907924_79908106_79908390_79908571_79911568_79911680_79914125
ENSMUSG00000045467.14_9	chr7	+	2646	3	ISM	ENSMUSG00000045467.14	ENSMUST00000205270.2	2723	14	9353	-147	9353	-4	intron_retention	FALSE	canonical	2	15	junction_2	1.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCGCGTGCTGTACCTCC	NA	False	NA	NA	False	ATTAAA	-16	NA	79906488	79910565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79906779_79907924_79908106_79908390
ENSMUSG00000045482.17_53	chr5	+	4326	19	ISM	ENSMUSG00000045482.17	ENSMUST00000132925.2	11581	63	47531	5	-5929	-5	3prime_fragment	FALSE	canonical	3	94	junction_2	18.395517435734	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTATTTGCTGTGCCCT	1304	False	NA	NA	False	AATAAA	-9	NA	144769865	144796581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144770004_144770106_144770245_144770966_144771080_144772797_144772934_144773941_144774134_144776210_144776407_144777147_144777414_144777782_144777884_144779346_144779549_144780013_144780179_144781008_144781100_144782224_144782425_144783177_144783440_144786669_144786896_144787929_144788148_144790249_144790435_144793696_144793901_144794194_144794390_144795483
ENSMUSG00000045482.17_57	chr5	+	3891	16	ISM	ENSMUSG00000045482.17	ENSMUST00000132925.2	11581	63	50507	7	-2953	-7	3prime_fragment	FALSE	canonical	3	96	junction_2	18.3193886360872	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGTATTTGCTGTGCC	1508	False	NA	NA	False	AATAAA	-7	NA	144772841	144796579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144772934_144773941_144774134_144776210_144776407_144777147_144777414_144777782_144777884_144779346_144779549_144780013_144780179_144781008_144781100_144782224_144782425_144783177_144783440_144786669_144786896_144787929_144788148_144790249_144790435_144793696_144793901_144794194_144794390_144795483
ENSMUSG00000045482.17_67	chr5	+	3310	13	ISM	ENSMUSG00000045482.17	ENSMUST00000132925.2	11581	63	54914	7	1454	-7	3prime_fragment	FALSE	canonical	3	101	junction_3	18.3817542386163	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGTATTTGCTGTGCC	5915	False	NA	NA	False	AATAAA	-7	NA	144777248	144796579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144777414_144777782_144777884_144779346_144779549_144780013_144780179_144781008_144781100_144782224_144782425_144783177_144783440_144786669_144786896_144787929_144788148_144790249_144790435_144793696_144793901_144794194_144794390_144795483
ENSMUSG00000045482.17_73	chr5	+	2979	11	ISM	ENSMUSG00000045482.17	ENSMUST00000132925.2	11581	63	57077	7	3617	-7	3prime_fragment	FALSE	canonical	3	101	junction_1	19.0934543757802	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGTATTTGCTGTGCC	8078	False	NA	NA	False	AATAAA	-7	NA	144779411	144796579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144779549_144780013_144780179_144781008_144781100_144782224_144782425_144783177_144783440_144786669_144786896_144787929_144788148_144790249_144790435_144793696_144793901_144794194_144794390_144795483
ENSMUSG00000045482.17_74	chr5	+	2784	10	ISM	ENSMUSG00000045482.17	ENSMUST00000132925.2	11581	63	57739	5	4279	-5	3prime_fragment	FALSE	canonical	3	103	junction_7	18.8332513928077	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTATTTGCTGTGCCCT	8740	False	NA	NA	False	AATAAA	-9	NA	144780073	144796581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144780179_144781008_144781100_144782224_144782425_144783177_144783440_144786669_144786896_144787929_144788148_144790249_144790435_144793696_144793901_144794194_144794390_144795483
ENSMUSG00000045482.17_81	chr5	+	1819	5	ISM	ENSMUSG00000045482.17	ENSMUST00000132925.2	11581	63	65674	7	-4384	-7	3prime_fragment	FALSE	canonical	3	103	junction_2	21.1541958013062	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGTATTTGCTGTGCC	NA	False	NA	NA	False	AATAAA	-7	NA	144788008	144796579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144788148_144790249_144790435_144793696_144793901_144794194_144794390_144795483
ENSMUSG00000045482.17_87	chr5	+	1355	3	ISM	ENSMUSG00000045482.17	ENSMUST00000132925.2	11581	63	71504	5	-247	-5	3prime_fragment	FALSE	canonical	3	144	junction_1	3	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTATTTGCTGTGCCCT	4812	False	NA	NA	False	AATAAA	-9	NA	144793838	144796581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144793901_144794194_144794390_144795483
ENSMUSG00000045482.17_89	chr5	+	839	1	ISM	ENSMUSG00000045482.17	ENSMUST00000100467.10	12479	71	90139	7	1657	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTATTTGCTGTGCCCT	6716	False	NA	NA	False	AATAAA	-9	NA	144795742	144796581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144795700_144796600
ENSMUSG00000045503.17_1	chr2	+	1029	4	FSM	ENSMUSG00000045503.17	ENSMUST00000072452.11	1606	4	29	548	0	-548	multi-exon	FALSE	canonical	3	236	junction_1	36.2613966759264	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCCATGACAGCCAGTAC	NA	False	NA	30	True	AATAAA	-24	NA	164302919	164306880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164303041_164303212_164303450_164305220_164305289_164306277
ENSMUSG00000045503.17_5	chr2	+	991	3	ISM	ENSMUSG00000045503.17	ENSMUST00000072452.11	1606	4	213	574	-125	-574	3prime_fragment	FALSE	canonical	3	303	junction_1	8.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCACTCTTCTCGTTGTC	NA	False	NA	4	True	AAAAAG	-34	NA	164303103	164306854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_164303450_164305220_164305289_164306277
ENSMUSG00000045503.17_6	chr2	+	180	1	ISM	ENSMUSG00000045503.17	ENSMUST00000109352.8	2001	6	7800	557	3467	-553	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTATGCCCATGACAGCC	NA	False	NA	25	True	AATAAA	-19	NA	164306695	164306875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_164306700_164306900
ENSMUSG00000045515.5_0	chr1	+	2928	1	FSM	ENSMUSG00000045515.5	ENSMUST00000054883.4	7409	1	1506	2975	1506	-2975	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAAATGGTCTGTGTC	NA	False	NA	NA	False	AATAAA	-7	NA	42736433	42739361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_42736400_42739400
ENSMUSG00000045519.16_0	chr9	-	4682	7	FSM	ENSMUSG00000045519.16	ENSMUST00000068079.14	4751	7	64	5	64	-5	multi-exon	FALSE	canonical	1	1	junction_4	13.5113121330075	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAATACAACTCAGTAT	NA	False	NA	NA	False	NA	NA	NA	20296409	20256436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20260456_20260876_20260960_20261827_20261909_20263133_20263261_20264048_20264138_20265359_20265546_20296312
ENSMUSG00000045519.16_2	chr9	-	4592	6	NIC	ENSMUSG00000045519.16	novel	4751	7	NA	NA	71	-5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	13.847743498491	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAATACAACTCAGTAT	NA	False	NA	NA	False	NA	NA	NA	20296402	20256436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_20260456_20261827_20261909_20263133_20263261_20264048_20264138_20265359_20265546_20296312
ENSMUSG00000045519.16_3	chr9	-	535	3	FSM	ENSMUSG00000045519.16	ENSMUST00000143992.3	608	3	71	2	71	-2	multi-exon	FALSE	canonical	3	31	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGCTTCTTGTCATATA	NA	False	NA	NA	False	NA	NA	NA	20296402	20263878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20264138_20265359_20265546_20296312
ENSMUSG00000045532.6_0	chr11	-	1522	2	FSM	ENSMUSG00000045532.6	ENSMUST00000057849.6	1473	2	-50	1	-50	-1	multi-exon	FALSE	canonical	3	27	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGGATTTCAGTCTGTGC	8609	False	NA	-11	True	AATAAA	-15	NA	102837564	102830090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102830739_102836690
ENSMUSG00000045538.7_0	chr8	-	1816	1	FSM	ENSMUSG00000045538.7	ENSMUST00000058579.7	2262	1	445	1	445	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTATGTCATGATTTCTT	NA	False	NA	-10	True	AATAAA	-16	NA	106738069	106736253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106736300_106738100
ENSMUSG00000045573.10_0	chr4	-	1300	3	NNC	ENSMUSG00000045573.10	novel	721	3	NA	NA	-9	-12	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGCACAATGATATTGTA	179	False	NA	-19	True	AATAAA	-39	NA	4138828	4133542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_4134508_4138005_4138147_4138634
ENSMUSG00000045576.17_0	chr3	+	1989	1	FSM	ENSMUSG00000045576.17	ENSMUST00000199186.2	2455	1	465	1	-33	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTGTCATTTATTTTTC	47	False	NA	NA	False	ATTAAA	-13	NA	104771785	104773774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_104771800_104773800
ENSMUSG00000045576.17_1	chr3	+	1916	14	FSM	ENSMUSG00000045576.17	ENSMUST00000059271.13	5728	14	581	3231	4	-27	multi-exon	FALSE	canonical	3	59	junction_11	6.94526359402813	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAAAGAATGATACAATT	661	False	NA	2	True	AATACA	-13	NA	104772399	104834149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
ENSMUSG00000045576.17_10	chr3	+	584	3	ISM	ENSMUSG00000045576.17	ENSMUST00000106769.8	2428	14	54860	79	30405	-79	3prime_fragment	FALSE	canonical	3	65	junction_1	7.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATTGGCCTTTGTGAT	NA	False	NA	-50	True	NA	NA	NA	104826678	104834097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_104826818_104829502_104829596_104833745
ENSMUSG00000045576.17_16	chr3	+	1828	14	FSM	ENSMUSG00000045576.17	ENSMUST00000106769.8	2428	14	573	27	-4	-27	multi-exon	FALSE	canonical	3	3	junction_11	18.8082821993382	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAAAGAATGATACAATT	653	False	NA	2	True	AATACA	-13	NA	104772391	104834149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826762_104826818_104829502_104829596_104833745
ENSMUSG00000045576.17_2	chr3	+	1960	15	NIC	ENSMUSG00000045576.17	novel	5728	14	NA	NA	4	-23	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	19.3639945701884	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATGATACAATTTTTC	661	False	NA	6	True	AATACA	-17	NA	104772399	104834153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104788239_104788280_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
ENSMUSG00000045576.17_3	chr3	+	1902	15	NIC	ENSMUSG00000045576.17	novel	5728	14	NA	NA	3	-30	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	24.4356714828205	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAACTAAAGAATGATACA	651	False	NA	-1	True	TATAAA	-45	NA	104772389	104834146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782203_104782259_104788239_104788280_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
ENSMUSG00000045591.7_0	chr10	+	2159	1	FSM	ENSMUSG00000045591.7	ENSMUST00000053225.7	2072	1	-141	54	-141	-54	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATACCAGTGTTTCTGGAT	NA	False	NA	NA	False	NA	NA	NA	19232139	19234298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_19232100_19234300
ENSMUSG00000045594.11_1	chr9	+	2327	16	FSM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	65	4	33	-4	multi-exon	FALSE	canonical	3	295	junction_2	39.3725228497687	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGTGGGGGTCCTGTCA	NA	False	NA	20	True	AATAAA	-11	NA	114230208	114303441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
ENSMUSG00000045594.11_10	chr9	+	2490	10	ISM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	72	29881	40	-29881	5prime_fragment	FALSE	canonical	3	295	junction_2	41.9046536795139	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACACTGAGTCTGGTTTCT	NA	False	NA	6	True	AATACA	-13	NA	114230215	114273564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076
ENSMUSG00000045594.11_2	chr9	+	2162	15	NIC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	28	-4	combination_of_known_junctions	FALSE	canonical	3	112	junction_1	76.8975265651421	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGTGGGGGTCCTGTCA	NA	False	NA	20	True	AATAAA	-11	NA	114230203	114303441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_114230338_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
ENSMUSG00000045594.11_5	chr9	+	2334	16	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	25	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	101.322367827752	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGTGGGGGTCCTGTCA	NA	False	NA	20	True	AATAAA	-11	NA	114230200	114303441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_114230338_114246028_114246199_114249420_114249572_114250757_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
ENSMUSG00000045598.11_0	chr7	+	2998	2	FSM	ENSMUSG00000045598.11	ENSMUST00000106312.4	3342	2	205	139	11	-3	multi-exon	FALSE	canonical	3	192	junction_1	0	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTGTGTGTGGTTATGT	8313	False	NA	25	True	AATAAA	-15	NA	126832437	126837212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126832659_126834435
ENSMUSG00000045598.11_1	chr7	+	3023	2	FSM	ENSMUSG00000045598.11	ENSMUST00000056232.7	3043	2	17	3	17	-3	multi-exon	FALSE	canonical	3	35	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTGTGTGTGGTTATGT	8319	False	NA	25	True	AATAAA	-15	NA	126832443	126837212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126832690_126834435
ENSMUSG00000045598.11_3	chr7	+	2403	1	ISM	ENSMUSG00000045598.11	ENSMUST00000106312.4	3342	2	2577	139	2344	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTGTGTGTGGTTATGT	NA	False	NA	25	True	AATAAA	-15	NA	126834809	126837212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_126834800_126837200
ENSMUSG00000045608.8_1	chr15	-	908	3	NNC	ENSMUSG00000045608.8	novel	477	3	NA	NA	-38	363	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	4.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATTAGTTCTCTCCAAGT	NA	False	NA	-16	True	ATTAAA	-11	NA	95530747	95522255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_95522899_95530158_95530347_95530670
ENSMUSG00000045608.8_2	chr15	-	1231	2	ISM	ENSMUSG00000045608.8	ENSMUST00000229611.2	477	3	-38	-362	-38	362	intron_retention	FALSE	canonical	3	36	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATTAGTTCTCTCCAAG	NA	False	NA	-17	True	ATTAAA	-10	NA	95530747	95522256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_95522899_95530158
ENSMUSG00000045608.8_3	chr15	-	879	3	FSM	ENSMUSG00000045608.8	ENSMUST00000229611.2	477	3	-38	-364	-38	364	multi-exon	FALSE	canonical	2	7	junction_2	14.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTAGTTCTCTCCAAGTT	NA	False	NA	-15	True	ATTAAA	-12	NA	95530747	95522254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_95522899_95530158_95530347_95530700
ENSMUSG00000045624.16_0	chr2	-	3370	14	FSM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	18	8	18	-8	multi-exon	FALSE	canonical	3	379	junction_8	12.585330053057	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAATTACCCGTTTGT	6995	False	NA	-20	True	AATAAA	-8	NA	140012466	139961810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
ENSMUSG00000045624.16_3	chr2	-	3077	13	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	2332	8	2332	-8	3prime_fragment	TRUE	canonical	3	379	junction_8	9.94254326953957	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAATTACCCGTTTGT	9309	False	NA	-20	True	AATAAA	-8	NA	140010152	139961810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691
ENSMUSG00000045629.9_1	chr18	+	4527	17	FSM	ENSMUSG00000045629.9	ENSMUST00000051720.6	4536	17	4	5	4	-5	multi-exon	FALSE	canonical	3	14	junction_11	4.02336923485777	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAATATACCCTTTTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	62086149	62148781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_62086239_62094014_62094114_62101059_62101188_62104012_62104119_62106357_62106502_62107519_62107719_62108639_62108714_62110947_62111144_62120626_62120761_62122263_62122306_62122414_62124116_62124208_62124390_62140718_62140870_62141527_62141651_62144877_62145029_62146103_62146301_62147969
ENSMUSG00000045629.9_4	chr18	+	1768	9	ISM	ENSMUSG00000045629.9	ENSMUST00000051720.6	4536	17	1	27430	1	-27430	5prime_fragment	TRUE	canonical	3	16	junction_5	3.59687364248454	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAATGAATGATAATAAT	NA	False	NA	NA	False	NA	NA	NA	62086146	62121356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_62086239_62094014_62094114_62101059_62101188_62104012_62104119_62106357_62106502_62107519_62107719_62108639_62108714_62110947_62111144_62120626
ENSMUSG00000045629.9_5	chr18	+	4639	16	NIC	ENSMUSG00000045629.9	novel	4536	17	NA	NA	1	-5	intron_retention	FALSE	canonical	3	14	junction_10	4.1505019776729	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAATATACCCTTTTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	62086146	62148781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_62086239_62094014_62094114_62101059_62101188_62104012_62104119_62106357_62106502_62107519_62107719_62108639_62108714_62110947_62111144_62120626_62120761_62122263_62124116_62124208_62124390_62140718_62140870_62141527_62141651_62144877_62145029_62146103_62146301_62147969
ENSMUSG00000045629.9_9	chr18	+	3177	7	ISM	ENSMUSG00000045629.9	ENSMUST00000236759.2	3615	10	11511	22	11511	-18	3prime_fragment	FALSE	canonical	3	14	junction_1	5.01386965216377	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTGGCTATTTACATTAA	NA	False	NA	NA	False	NA	NA	NA	62122540	62148768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_62124116_62124208_62124390_62140718_62140870_62141527_62141651_62144877_62145029_62146103_62146301_62147969
ENSMUSG00000045636.17_1	chr8	-	6064	14	FSM	ENSMUSG00000045636.17	ENSMUST00000059115.13	6548	14	-25	509	-25	-371	multi-exon	FALSE	canonical	3	90	junction_13	16.5128603280297	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAAGAATGGCAGCCTC	NA	False	NA	-8	True	AATAAA	-17	NA	41586788	41444459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41529268_41529465_41535650_41537878_41586517
ENSMUSG00000045636.17_11	chr8	-	7086	13	NIC	ENSMUSG00000045636.17	novel	6548	14	NA	NA	1	-367	intron_retention	FALSE	canonical	3	90	junction_12	16.4738850575354	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAATGGCAGCCTCTGAC	NA	False	NA	-4	True	AATAAA	-21	NA	41586762	41444455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41529268_41529465_41535650_41537878_41586517
ENSMUSG00000045636.17_12	chr8	-	2125	1	ISM	ENSMUSG00000045636.17	ENSMUST00000059115.13	6548	14	140675	13	7154	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAAGCATTTGAATCTTG	NA	False	NA	-15	True	TATAAA	-32	NA	41446088	41443963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_41444000_41446100
ENSMUSG00000045636.17_2	chr8	-	3629	10	FSM	ENSMUSG00000045636.17	ENSMUST00000051379.14	3964	10	-36	371	-36	-371	multi-exon	FALSE	canonical	3	9	junction_9	37.6133677314165	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAAGAATGGCAGCCTC	NA	False	NA	-8	True	AATAAA	-17	NA	41494939	41444459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41494509
ENSMUSG00000045636.17_4	chr8	-	5308	13	ISM	ENSMUSG00000045636.17	ENSMUST00000118835.8	6426	14	30812	5	-1079	-5	3prime_fragment	TRUE	canonical	3	91	junction_10	15.6436000403431	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATTTGAATCTTGAGTC	NA	False	NA	-11	True	TATAAA	-36	NA	41536892	41443959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41529268_41529465_41535650
ENSMUSG00000045636.17_5	chr8	-	4378	14	NIC	ENSMUSG00000045636.17	novel	6548	14	NA	NA	1	-1851	combination_of_known_junctions	FALSE	canonical	3	11	junction_13	31.6824107026122	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAACCAAGTCATAATCG	NA	False	NA	10	True	ATTAAA	-29	NA	41586762	41445939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41529268_41529465_41535650_41537878_41586697
ENSMUSG00000045636.17_6	chr8	-	5945	14	NNC	ENSMUSG00000045636.17	novel	6548	14	NA	NA	-324	-366	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_13	31.6824107026122	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATGGCAGCCTCTGACA	NA	False	NA	-3	True	AATAAA	-22	NA	41587087	41444454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41529268_41529465_41535650_41537878_41586940
ENSMUSG00000045636.17_7	chr8	-	6214	15	NIC	ENSMUSG00000045636.17	novel	6548	14	NA	NA	-25	-371	combination_of_known_junctions	FALSE	canonical	3	15	junction_12	38.0332829538143	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAAGAATGGCAGCCTC	NA	False	NA	-8	True	AATAAA	-17	NA	41586788	41444459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41509571_41509722_41529268_41529465_41535650_41537878_41586517
ENSMUSG00000045639.15_1	chr7	-	5786	3	FSM	ENSMUSG00000045639.15	ENSMUST00000084564.10	5829	3	35	8	21	-8	multi-exon	FALSE	canonical	2	2	junction_1	0.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCTAGTTGTTTTTACT	4437	False	NA	-8	True	AATAAA	-10	NA	127214409	127206210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127211735_127211838_127211946_127214254
ENSMUSG00000045639.15_3	chr7	-	3662	1	ISM	ENSMUSG00000045639.15	ENSMUST00000058038.12	6120	3	3737	4	3664	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTTGTTTTTACTTCTT	8978	False	NA	-4	True	AATAAA	-14	NA	127209868	127206206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_127206200_127209900
ENSMUSG00000045658.17_1	chr1	-	2533	3	FSM	ENSMUSG00000045658.17	ENSMUST00000168574.9	2664	3	46	85	12	-85	multi-exon	FALSE	canonical	3	48	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCGTTTCACACTTTATA	486	False	NA	NA	False	AATAAA	-24	NA	84262320	84014101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_84016229_84136952_84137100_84262061
ENSMUSG00000045658.17_2	chr1	-	2291	1	Genic_Genomic	ENSMUSG00000045658.17	novel	NA	NA	NA	NA	16699	2032	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84014275	84011984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_-_84012000_84014300
ENSMUSG00000045658.17_6	chr1	-	607	3	FSM	ENSMUSG00000045658.17	ENSMUST00000176720.2	450	3	-175	18	13	-18	multi-exon	FALSE	canonical	3	16	junction_1	16	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTGGAACAGCCTCAT	487	False	NA	NA	False	NA	NA	NA	84262319	84058317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_84058520_84136952_84137100_84262061
ENSMUSG00000045658.17_7	chr1	-	1442	1	FSM	ENSMUSG00000045658.17	ENSMUST00000187992.2	1431	1	-14	3	8	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	448	False	NA	NA	False	NA	NA	NA	84262358	84260916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_84260900_84262400
ENSMUSG00000045659.19_2	chr7	-	5117	27	FSM	ENSMUSG00000045659.19	ENSMUST00000181998.8	5149	27	29	3	8	-3	multi-exon	FALSE	canonical	3	186	junction_4	26.6807778245958	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCCGTGTCCTGGCTCTT	NA	False	NA	-9	True	ATTAAA	-10	NA	115907582	115722730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_115724056_115727788_115727929_115728626_115728761_115731855_115732012_115734273_115734475_115735152_115735257_115736221_115736340_115736424_115736614_115739511_115739739_115739850_115739960_115741932_115742035_115742524_115742675_115744150_115744232_115744404_115744474_115753867_115753922_115756716_115756804_115757091_115757615_115763266_115763732_115769896_115770073_115774946_115775048_115776120_115776194_115779628_115779734_115780408_115780521_115788504_115788589_115907159_115907218_115907306_115907384_115907485
ENSMUSG00000045659.19_4	chr7	-	3980	18	ISM	ENSMUSG00000045659.19	ENSMUST00000084664.11	4312	25	25599	-622	-156	-3	3prime_fragment	FALSE	canonical	3	186	junction_4	29.3316556089363	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCCGTGTCCTGGCTCTT	NA	False	NA	-9	True	ATTAAA	-10	NA	115763477	115722730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_115724056_115727788_115727929_115728626_115728761_115731855_115732012_115734273_115734475_115735152_115735257_115736221_115736340_115736424_115736614_115739511_115739739_115739850_115739960_115741932_115742035_115742524_115742675_115744150_115744232_115744404_115744474_115753867_115753922_115756716_115756804_115757091_115757615_115763266
ENSMUSG00000045659.19_84	chr7	-	4606	23	FSM	ENSMUSG00000045659.19	ENSMUST00000182487.8	3476	23	8	-1138	8	0	multi-exon	FALSE	canonical	3	231	junction_11	21.5147460482494	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACGGATTGGCGTGGTTC	NA	False	NA	-4	True	AATAAA	-14	NA	115907582	115733029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_115734475_115735152_115735257_115736221_115736340_115736424_115736614_115739511_115739739_115739850_115739960_115741932_115742035_115742524_115742675_115744150_115744232_115744404_115744474_115753867_115753922_115756716_115756804_115757091_115757615_115763266_115763732_115769896_115770073_115774946_115775048_115776120_115776194_115779628_115779734_115780408_115780521_115788504_115788589_115907159_115907218_115907306_115907384_115907485
ENSMUSG00000045664.6_0	chr19	-	1482	2	FSM	ENSMUSG00000045664.6	ENSMUST00000055458.6	3411	2	2	1927	2	-1927	multi-exon	FALSE	canonical	3	11	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGAGCATCCTGTCCCC	NA	False	NA	-15	True	AATAAA	-16	NA	5974842	5967590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5969022_5974791
ENSMUSG00000045665.6_0	chr15	+	1725	2	FSM	ENSMUSG00000045665.6	ENSMUST00000051341.6	1754	2	19	10	19	-10	multi-exon	FALSE	canonical	3	355	junction_1	0	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGACTCACTTGTCCTCT	NA	False	NA	17	True	AATAAA	-13	NA	102187907	102190179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102188065_102188611
ENSMUSG00000045665.6_1	chr15	+	2001	1	NIC	ENSMUSG00000045665.6	novel	1754	2	NA	NA	290	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGACTCACTTGTCCTCT	NA	False	NA	17	True	AATAAA	-13	NA	102188178	102190179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102188200_102190200
ENSMUSG00000045667.15_0	chr11	-	2612	8	FSM	ENSMUSG00000045667.15	ENSMUST00000050226.7	2624	8	4	8	2	-8	multi-exon	FALSE	canonical	3	500	junction_3	27.0237990350305	1082	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGATGACTTTGAGTG	NA	False	NA	-9	True	GATAAA	-10	NA	72302535	72280947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_72282240_72290699_72290852_72291154_72291273_72292173_72292354_72293250_72293327_72293836_72294077_72294742_72294831_72302069
ENSMUSG00000045671.18_0	chr11	+	4323	6	FSM	ENSMUSG00000045671.18	ENSMUST00000093298.12	2852	6	-23	-1448	-23	-1	multi-exon	TRUE	canonical	3	51	junction_2	8.95767827062348	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTGGCTTTGGGGTATT	NA	False	NA	2	True	TATAAA	-14	NA	19874418	19974025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_19874957_19948119_19948298_19955781_19955951_19958412_19958478_19968051_19968190_19970790
ENSMUSG00000045671.18_6	chr11	+	3879	6	NNC	ENSMUSG00000045671.18	novel	4449	7	NA	NA	28581	-1	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	25.0647162361755	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTGGCTTTGGGGTATT	7179	False	NA	2	True	TATAAA	-14	NA	19933150	19974025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_19933245_19948119_19948298_19955781_19955951_19958412_19958478_19968051_19968190_19970790
ENSMUSG00000045671.18_9	chr11	+	2028	1	ISM	ENSMUSG00000045671.18	ENSMUST00000093299.13	4449	7	97622	2	67427	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTATTGGCTTTGGGGTAT	NA	False	NA	1	True	TATAAA	-13	NA	19971996	19974024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_19972000_19974000
ENSMUSG00000045679.15_1	chr12	-	1853	7	FSM	ENSMUSG00000045679.15	ENSMUST00000054536.11	1928	7	69	6	-17	-6	multi-exon	FALSE	canonical	3	122	junction_2	25.4165300542777	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGAATTCTTAAGCTGTCA	NA	False	NA	-5	True	AATAAA	-20	NA	17050050	17038654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_17039897_17042278_17042321_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
ENSMUSG00000045679.15_4	chr12	-	1739	6	FSM	ENSMUSG00000045679.15	ENSMUST00000222203.2	1706	6	9	-42	9	-8	multi-exon	FALSE	canonical	3	14	junction_2	66.9943281181325	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCGAATTCTTAAGCTGT	NA	False	NA	-7	True	AATAAA	-18	NA	17050059	17038656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_17039897_17042278_17042321_17045614_17045673_17047634_17047705_17047774_17047858_17049813
ENSMUSG00000045690.9_1	chr12	-	2966	2	FSM	ENSMUSG00000045690.9	ENSMUST00000062370.9	2979	2	9	4	-1	-4	multi-exon	FALSE	canonical	3	148	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTTGGGTATCTTG	6419	False	NA	-6	True	AATAAA	-13	NA	75716302	75677373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_75680283_75716245
ENSMUSG00000045690.9_4	chr12	-	397	1	FSM	ENSMUSG00000118552.2	ENSMUST00000238938.2	348	1	-14	-35	-14	35	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCTTGAAAAAAAAAAAAGA	NA	False	NA	-45	True	AATAAA	-13	NA	75678106	75677709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_75677700_75678100
ENSMUSG00000045691.15_0	chr14	+	2529	2	FSM	ENSMUSG00000045691.15	ENSMUST00000050575.9	2830	2	296	5	296	-5	multi-exon	FALSE	canonical	3	37	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACGTGGGTCTTTATTT	NA	False	NA	2	True	AATAAA	-13	NA	55332536	55336438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55333464_55334836
ENSMUSG00000045691.15_2	chr14	+	3856	1	NIC	ENSMUSG00000100162.3	novel	4242	7	NA	NA	39633	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACGTGGGTCTTTATTT	NA	False	NA	2	True	AATAAA	-13	NA	55332582	55336438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55332600_55336400
ENSMUSG00000045699.5_2	chr4	-	2751	6	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	17	63794	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	18.9567929777165	40	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146994030	146912358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_146913241_146913493_146914904_146917069_146917197_146921032_146921137_146983728_146983809_146993882
ENSMUSG00000045699.5_5	chr4	-	2604	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	17	63794	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.834128686216	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146994030	146912358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_146913178_146913261_146913622_146914378_146914412_146976203_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
ENSMUSG00000045730.5_0	chr18	-	2158	1	FSM	ENSMUSG00000045730.5	ENSMUST00000053640.5	2144	1	-18	4	-18	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTTCATTGCACCCGTT	NA	False	NA	NA	False	AATAAA	-11	NA	62313048	62310890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_62310900_62313000
ENSMUSG00000045744.12_0	chr17	+	4500	5	Fusion	ENSMUSG00000045744.12_ENSMUSG00000043445.8	novel	997	5	NA	NA	18	-2	intron_retention	FALSE	canonical	0	0	junction_2	489.304353138208	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATAATGGTAATTTCTGA	NA	False	NA	NA	False	AATAAA	-14	NA	24689426	24694441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_+_24690124_24690215_24693535_24693612_24693715_24693963_24694118_24694213
ENSMUSG00000045746.4_0	chr8	+	2481	1	FSM	ENSMUSG00000045746.4	ENSMUST00000052189.4	2472	1	-11	2	-11	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61436459	61438940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_61436500_61438900
ENSMUSG00000045751.17_0	chr4	+	4447	24	FSM	ENSMUSG00000045751.17	ENSMUST00000108222.9	4478	24	18	13	4	-9	multi-exon	FALSE	canonical	3	129	junction_15	74.8650203134992	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGAAACAAAACAGCTCT	2	True	NA	NA	False	ATTAAA	-10	NA	24496468	24602937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24602573
ENSMUSG00000045751.17_1	chr4	+	1341	5	FSM	ENSMUSG00000045751.17	ENSMUST00000138567.9	1350	5	6	3	3	-3	multi-exon	FALSE	canonical	3	361	junction_3	29.9457843443781	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTCTGTCATTCTCGTT	1	True	NA	6	True	AATAAA	-15	NA	24496467	24503410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
ENSMUSG00000045751.17_3	chr4	+	4450	24	NIC	ENSMUSG00000045751.17	novel	4478	24	NA	NA	4	-9	intron_retention	FALSE	canonical	3	64	junction_15	79.749300001076	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGAAACAAAACAGCTCT	2	True	NA	NA	False	ATTAAA	-10	NA	24496468	24602937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580050_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24602573
ENSMUSG00000045752.14_1	chr7	+	1453	2	FSM	ENSMUSG00000045752.14	ENSMUST00000133410.3	1091	2	179	-541	-24	0	multi-exon	FALSE	canonical	3	124	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623256	142624824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_142623558_142623672
ENSMUSG00000045752.14_2	chr7	+	1610	1	FSM	ENSMUSG00000045752.14	ENSMUST00000207776.2	1735	1	127	-2	56	2	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTGTGTGGCTTTTTCC	NA	False	NA	18	True	AATAAA	-17	NA	142623216	142624826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_142623200_142624800
ENSMUSG00000045752.14_5	chr7	+	1305	3	FSM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	208	6	33	0	multi-exon	FALSE	canonical	3	158	junction_2	1	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623193	142624824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_142623251_142623491_142623588_142623672
ENSMUSG00000045752.14_7	chr7	+	1523	2	FSM	ENSMUSG00000045752.14	ENSMUST00000137856.2	981	2	-64	-478	56	0	multi-exon	FALSE	canonical	3	158	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623216	142624824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_142623588_142623672
ENSMUSG00000045752.14_8	chr7	+	1282	3	FSM	ENSMUSG00000045752.14	ENSMUST00000177841.8	1364	3	83	-1	27	1	multi-exon	FALSE	canonical	3	124	junction_2	18	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAATTGTGTGGCTTTTTC	NA	False	NA	17	True	AATAAA	-16	NA	142623187	142624825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_142623251_142623491_142623558_142623672
ENSMUSG00000045752.14_9	chr7	+	1377	2	ISM	ENSMUSG00000045752.14	ENSMUST00000105920.8	895	4	102	0	46	0	intron_retention	FALSE	canonical	3	160	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623206	142624824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_142623251_142623491
ENSMUSG00000045757.7_3	chr7	-	2468	3	FSM	ENSMUSG00000045757.7	ENSMUST00000059199.7	2508	3	40	0	1	0	multi-exon	FALSE	canonical	2	4	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGATTTCTGCTCCTC	8641	False	NA	NA	False	AATAAA	-19	NA	127005954	127002839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127004832_127005337_127005452_127005592
ENSMUSG00000045763.9_0	chr15	-	1818	2	FSM	ENSMUSG00000045763.9	ENSMUST00000058845.9	1855	2	29	8	29	-8	multi-exon	FALSE	canonical	3	95	junction_1	0	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTAGTAACTGGCTTT	NA	False	NA	NA	False	AATAAA	-12	NA	25413821	25363370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_25365005_25413637
ENSMUSG00000045763.9_1	chr15	-	1310	1	ISM	ENSMUSG00000045763.9	ENSMUST00000058845.9	1855	2	49170	8	49104	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTAGTAACTGGCTTT	303	False	NA	NA	False	AATAAA	-12	NA	25364680	25363370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_25363400_25364700
ENSMUSG00000045767.10_0	chr13	+	4475	3	NNC	ENSMUSG00000045767.10	novel	4652	2	NA	NA	-5	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	116.5	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCAGCTCTGTACTACT	NA	False	NA	12	True	AATAAA	-12	NA	55840931	55851306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_55841161_55846885_55848027_55848201
ENSMUSG00000045767.10_1	chr13	+	4653	2	FSM	ENSMUSG00000045767.10	ENSMUST00000057844.10	4652	2	-8	7	-8	-7	multi-exon	FALSE	canonical	3	233	junction_1	0	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCAGCTCTGTACTACT	NA	False	NA	12	True	AATAAA	-12	NA	55840928	55851306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55841161_55846885
ENSMUSG00000045767.10_16	chr13	+	2494	1	ISM	ENSMUSG00000045767.10	ENSMUST00000057844.10	4652	2	7876	7	7876	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCAGCTCTGTACTACT	NA	False	NA	12	True	AATAAA	-12	NA	55848812	55851306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_55848800_55851300
ENSMUSG00000045775.16_3	chr11	+	1918	2	ISM	ENSMUSG00000045775.16	ENSMUST00000140739.2	2340	3	5346	-749	5346	-43	3prime_fragment	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAATTTTTTTGGCCTG	NA	False	NA	NA	False	NA	NA	NA	115360741	115365181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115360975_115363496
ENSMUSG00000045790.11_0	chr5	-	3339	12	FSM	ENSMUSG00000045790.11	ENSMUST00000059428.7	3295	12	-48	4	-48	-4	multi-exon	FALSE	canonical	0	0	junction_2	0.385694607919935	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTTATGGTTTCCCTTG	NA	False	NA	NA	False	ATTAAA	-13	NA	52628911	52531996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_52534021_52542446_52542564_52550012_52550090_52557426_52557572_52560048_52560134_52561458_52561532_52562377_52562551_52563317_52563435_52578073_52578182_52593039_52593079_52596400_52596563_52628692
ENSMUSG00000045795.11_0	chr7	+	2716	10	FSM	ENSMUSG00000045795.11	ENSMUST00000165460.2	3069	10	-6	359	-6	0	multi-exon	FALSE	canonical	3	45	junction_8	9.86576572463249	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATTACCTTAAAAATTTT	6978	False	NA	-63	True	AATAAA	-14	NA	81221033	81246225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_81221658_81224293_81224468_81227898_81228050_81234849_81235020_81235881_81236048_81239085_81239274_81241509_81241597_81241754_81241851_81243399_81243869_81245634
ENSMUSG00000045795.11_1	chr7	+	2701	10	NIC	ENSMUSG00000045795.11	novel	3069	10	NA	NA	-6	2	intron_retention	FALSE	canonical	2	4	junction_2	20.9961783706664	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTACCTTAAAAATTTTAT	6978	False	NA	-61	True	AATAAA	-16	NA	81221033	81246227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_81221658_81224293_81224451_81227898_81228050_81234849_81235020_81235881_81236048_81239085_81239274_81241509_81241597_81241754_81241851_81243399_81243869_81245634
ENSMUSG00000045802.14_10	chrX	-	735	4	ISM	ENSMUSG00000045802.14	ENSMUST00000059003.5	1479	12	-137	21854	-137	-8700	5prime_fragment	FALSE	canonical	3	25	junction_2	5.31245915016974	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCTTTAAATCTTGAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	95411662	95372982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_95373245_95382022_95382151_95400740_95400850_95411426
ENSMUSG00000045802.14_4	chrX	-	2965	12	FSM	ENSMUSG00000045802.14	ENSMUST00000059003.5	1479	12	-140	-1346	-140	1	multi-exon	FALSE	canonical	2	9	junction_1	7.96998501611043	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTTCATGGCATCATG	NA	False	NA	NA	False	AATAAA	-11	NA	95411665	95349782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_95351419_95355322_95355384_95356633_95356734_95358396_95358613_95363891_95364023_95364209_95364292_95365602_95365665_95365900_95365977_95373119_95373245_95382022_95382151_95400740_95400850_95411426
ENSMUSG00000045802.14_7	chrX	-	2931	11	NIC	ENSMUSG00000045802.14	novel	1479	12	NA	NA	-171	-3	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	7.69675256195754	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATACTTTTTCATGGCAT	NA	False	NA	NA	False	AATAAA	-7	NA	95411696	95349786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_95351419_95356633_95356734_95358396_95358613_95363891_95364023_95364209_95364292_95365602_95365665_95365900_95365977_95373119_95373245_95382022_95382151_95400740_95400850_95411426
ENSMUSG00000045817.9_0	chr17	-	3528	2	FSM	ENSMUSG00000045817.9	ENSMUST00000060366.7	3530	2	2	0	2	0	multi-exon	FALSE	canonical	3	151	junction_1	0	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTCTTTGAGTAAT	NA	False	NA	NA	False	AATAAA	-10	NA	84495373	84491358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_84494585_84495071
ENSMUSG00000045817.9_1	chr17	-	2629	1	ISM	ENSMUSG00000045817.9	ENSMUST00000060366.7	3530	2	1388	0	1388	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTCTTTGAGTAAT	NA	False	NA	NA	False	AATAAA	-10	NA	84493987	84491358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_84491400_84494000
ENSMUSG00000045822.5_0	chr2	+	2701	2	FSM	ENSMUSG00000045822.5	ENSMUST00000052107.5	2708	2	4	3	4	-3	multi-exon	FALSE	canonical	3	86	junction_1	0	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGTTTGTGTTTTTTGAG	3067	False	NA	19	True	AATAAA	-19	NA	164647021	164664047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164647352_164661676
ENSMUSG00000045822.5_1	chr2	+	2454	2	Fusion	ENSMUSG00000017764.3_ENSMUSG00000045822.5	novel	2708	2	NA	NA	66	-4	multi-exon	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTCGTGTCTTGTCTGG	3129	False	NA	12	True	AATAAA	-15	NA	164647083	164668787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_164647352_164666601
ENSMUSG00000045822.5_7	chr2	+	1315	1	ISM	ENSMUSG00000045822.5	ENSMUST00000052107.5	2708	2	15715	3	15715	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGTTTGTGTTTTTTGAG	6654	False	NA	19	True	AATAAA	-19	NA	164662732	164664047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_164662700_164664000
ENSMUSG00000045827.11_0	chr13	+	2227	7	FSM	ENSMUSG00000045827.11	ENSMUST00000006391.5	3397	7	94	1076	94	-1076	multi-exon	FALSE	canonical	1	2	junction_3	1.73205080756888	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGATGTGATTCCTTTA	NA	False	NA	NA	False	NA	NA	NA	33188617	33200862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_33188679_33190515_33190694_33191988_33192127_33192750_33192869_33194669_33194813_33197844_33198001_33199429
ENSMUSG00000045854.5_0	chr4	+	1298	3	FSM	ENSMUSG00000045854.5	ENSMUST00000062802.5	465	3	24	-857	-2	681	multi-exon	FALSE	canonical	3	270	junction_2	3	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAATCTTTAAAAAAAA	9	True	NA	NA	False	NA	NA	NA	32800276	32802240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_32800336_32800609_32800751_32801142
ENSMUSG00000045854.5_2	chr4	+	1348	2	FSM	ENSMUSG00000045854.5	ENSMUST00000135833.2	889	2	226	-685	223	685	multi-exon	FALSE	canonical	3	270	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	237	False	NA	NA	False	NA	NA	NA	32800504	32802244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_32800751_32801142
ENSMUSG00000045867.11_11	chr10	-	1554	2	ISM	ENSMUSG00000045867.11	ENSMUST00000218761.2	2663	3	-93	110898	14	302	5prime_fragment	FALSE	canonical	3	29	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAACAACAACAACAACAAA	NA	False	NA	NA	False	NA	NA	NA	95159956	95157307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_95158752_95159846
ENSMUSG00000045867.11_16	chr10	-	938	3	NIC	ENSMUSG00000045867.11	novel	717	3	NA	NA	-5	302	combination_of_known_junctions	FALSE	canonical	2	18	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAACAACAACAACAACAAA	NA	False	NA	NA	False	NA	NA	NA	95160000	95157307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_95157804_95158447_95158752_95159862
ENSMUSG00000045867.11_2	chr10	-	1639	3	NIC	ENSMUSG00000045867.11	novel	1661	3	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	2	18	junction_2	34	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAGTGCGTGTCCATT	NA	False	NA	NA	False	ATTAAA	-13	NA	95159964	95010607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_95011841_95158447_95158752_95159862
ENSMUSG00000045867.11_3	chr10	-	1124	3	FSM	ENSMUSG00000045867.11	ENSMUST00000053594.7	1661	3	14	523	14	-4	multi-exon	FALSE	canonical	3	29	junction_2	28.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGTGCCTCTTTCAATG	NA	False	NA	-2	True	AATAAA	-18	NA	95159956	95011130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_95011841_95158447_95158752_95159846
ENSMUSG00000045867.11_4	chr10	-	1147	3	FSM	ENSMUSG00000045867.11	ENSMUST00000217809.2	1115	3	-34	2	-34	-2	multi-exon	FALSE	canonical	3	30	junction_2	28	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGCCTCTTTCAATGAG	NA	False	NA	0	True	AATAAA	-20	NA	95159461	95011128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_95011841_95158447_95158752_95159330
ENSMUSG00000045867.11_5	chr10	-	821	1	ISM	ENSMUSG00000045867.11	ENSMUST00000220279.2	1613	2	147399	0	147399	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAGTGCGTGTCCATT	NA	False	NA	NA	False	ATTAAA	-13	NA	95011428	95010607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_95010600_95011400
ENSMUSG00000045867.11_6	chr10	-	1546	2	FSM	ENSMUSG00000045867.11	ENSMUST00000220279.2	1613	2	67	0	67	0	multi-exon	FALSE	canonical	3	86	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAGTGCGTGTCCATT	NA	False	NA	NA	False	ATTAAA	-13	NA	95158760	95010607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_95011841_95158447
ENSMUSG00000045886.8_0	chr10	+	522	1	FSM	ENSMUSG00000045886.8	ENSMUST00000057649.8	563	1	9	32	9	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	43400088	43400610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_43400100_43400600
ENSMUSG00000045896.15_0	chr6	-	2061	1	ISM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	23617	663	2074	-663	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAATGTTTTCCAGGTTA	NA	False	NA	NA	False	AATAAA	-16	NA	83785106	83783045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_83783000_83785100
ENSMUSG00000045896.15_1	chr6	-	3281	5	FSM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	38	663	-3	-663	multi-exon	FALSE	canonical	3	74	junction_4	4.71036092035419	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAATGTTTTCCAGGTTA	NA	False	NA	NA	False	AATAAA	-16	NA	83808685	83783045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808616
ENSMUSG00000045896.15_3	chr6	-	3210	4	ISM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	411	667	370	-667	3prime_fragment	FALSE	canonical	3	75	junction_1	4.64279609239471	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACTAAATGTTTTCCAG	NA	False	NA	NA	False	AATAAA	-12	NA	83808312	83783049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252
ENSMUSG00000045912.10_0	chr10	-	2878	2	FSM	ENSMUSG00000045912.10	ENSMUST00000059699.9	6729	2	-13	3864	12	-4	multi-exon	FALSE	canonical	1	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCGGGGGTGCAGGCCTG	NA	False	NA	NA	False	AGTAAA	-12	NA	79449847	79446551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79449173_79449590
ENSMUSG00000045912.10_1	chr10	-	2730	2	FSM	ENSMUSG00000045912.10	ENSMUST00000178228.3	2761	2	27	4	2	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCGGGGGTGCAGGCCTG	NA	False	NA	NA	False	AGTAAA	-12	NA	79449832	79446551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79449173_79449723
ENSMUSG00000045917.18_0	chr4	+	3146	10	NNC	ENSMUSG00000045917.18	novel	3765	10	NA	NA	-232	-619	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	20.5414365925061	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCGTGGTGTGGTCCTTCG	NA	False	NA	25	True	AATAAA	-36	NA	63476785	63503971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_63476967_63479148_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
ENSMUSG00000045917.18_12	chr4	+	3738	9	ISM	ENSMUSG00000045917.18	ENSMUST00000077709.11	3765	10	1342	639	-104	-635	3prime_fragment	FALSE	canonical	3	53	junction_7	10.2827221590394	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCTTGCTCGTGGAGGC	NA	False	NA	9	True	AATAAA	-20	NA	63478359	63503955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
ENSMUSG00000045917.18_3	chr4	+	3747	10	FSM	ENSMUSG00000045917.18	ENSMUST00000077709.11	3765	10	9	9	9	-5	multi-exon	FALSE	canonical	3	52	junction_1	11.4901997962622	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTCAAGCTTAGTAAGG	NA	False	NA	9	True	AATAAA	-9	NA	63477026	63504585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_63477195_63479148_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
ENSMUSG00000045917.18_7	chr4	+	3787	10	NIC	ENSMUSG00000045917.18	novel	3765	10	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	22.7888861801829	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAAGCTTAGTAAGGGAC	NA	False	NA	12	True	AATAAA	-12	NA	63477019	63504588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_63477195_63479118_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
ENSMUSG00000045934.16_0	chr3	+	2772	17	FSM	ENSMUSG00000045934.16	ENSMUST00000054356.16	2778	17	1	5	1	-4	multi-exon	FALSE	canonical	2	2	junction_4	1.93245310421754	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATTGCTGGTATTTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	96069321	96079029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96069576_96069945_96070037_96070408_96070531_96070784_96070846_96070984_96071128_96071564_96071644_96071749_96071886_96072102_96072191_96072313_96072403_96072487_96072613_96075127_96075195_96075388_96075460_96075914_96076082_96076351_96076526_96077122_96077306_96077668_96077963_96078401
ENSMUSG00000045934.16_1	chr3	+	2715	17	NIC	ENSMUSG00000045934.16	novel	2778	17	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	2.24913177693082	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATTGCTGGTATTTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	96069321	96079029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_96069576_96069945_96070037_96070408_96070531_96070784_96070846_96070984_96071128_96071564_96071644_96071749_96071886_96072102_96072191_96072313_96072403_96072487_96072613_96075127_96075195_96075388_96075460_96075914_96076082_96076351_96076526_96077122_96077306_96077668_96077963_96078458
ENSMUSG00000045948.9_1	chr7	-	701	3	FSM	ENSMUSG00000045948.9	ENSMUST00000056078.9	722	3	20	1	20	-1	multi-exon	FALSE	canonical	3	503	junction_2	218	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCAGTGTGCGGTGTCTG	1664	False	NA	-7	True	AATAAA	-22	NA	28441225	28439067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28439665_28440911_28440980_28441189
ENSMUSG00000045948.9_2	chr7	-	873	2	FSM	ENSMUSG00000045948.9	ENSMUST00000171183.2	883	2	8	2	8	-1	multi-exon	FALSE	canonical	3	939	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCAGTGTGCGGTGTCTG	1702	False	NA	-7	True	AATAAA	-22	NA	28441187	28439067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28439665_28440911
ENSMUSG00000045962.17_0	chr6	-	1900	1	ISM	ENSMUSG00000045962.17	ENSMUST00000159903.2	2934	2	1391	2	1391	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTGGGTTGTTCTTTCT	NA	False	NA	-3	True	AATAAA	-19	NA	119902831	119900931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_119900900_119902800
ENSMUSG00000045962.17_1	chr6	-	6013	13	ISM	ENSMUSG00000045962.17	ENSMUST00000203030.3	8163	26	87033	-650	-472	0	3prime_fragment	FALSE	canonical	3	12	junction_5	2.98491578142872	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTGGGTTGTTCTTTCT	6111	False	NA	-3	True	AATAAA	-19	NA	119927587	119900931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119921661_119921746_119923197_119923282_119924935_119926381_119926968_119927092_119927203_119927262_119927459
ENSMUSG00000045962.17_12	chr6	-	743	1	ISM	ENSMUSG00000045962.17	ENSMUST00000159903.2	2934	2	967	1583	967	-931	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTACTGTACTTGAAT	NA	False	NA	NA	False	AATAAA	-18	NA	119903255	119902512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_119902500_119903300
ENSMUSG00000045962.17_6	chr6	-	4925	10	ISM	ENSMUSG00000045962.17	ENSMUST00000203030.3	8163	26	89019	-650	-214	0	3prime_fragment	FALSE	canonical	3	12	junction_5	2.94811092476036	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTGGGTTGTTCTTTCT	8097	False	NA	-3	True	AATAAA	-19	NA	119925601	119900931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119921661_119921746_119923197_119923282_119924935
ENSMUSG00000045962.17_7	chr6	-	3650	5	ISM	ENSMUSG00000045962.17	ENSMUST00000088646.12	8364	26	99956	-650	-54	0	3prime_fragment	FALSE	canonical	3	16	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTGGGTTGTTCTTTCT	6949	False	NA	-3	True	AATAAA	-19	NA	119914664	119900931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317
ENSMUSG00000045969.9_2	chr8	+	2389	2	FSM	ENSMUSG00000045969.9	ENSMUST00000054399.6	2814	2	418	7	373	-5	multi-exon	FALSE	canonical	3	454	junction_1	0	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACCATCCATGTTTATTT	NA	False	NA	9	True	NA	NA	NA	11606483	11613244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_11607046_11611417
ENSMUSG00000045969.9_6	chr8	+	1939	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	29	3	29	-2	multi-exon	FALSE	canonical	3	111	junction_1	0	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCCATGTTTATTTCCT	NA	False	NA	12	True	NA	NA	NA	11608457	11613247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_11608567_11611417
ENSMUSG00000045969.9_7	chr8	+	1514	1	ISM	ENSMUSG00000045969.9	ENSMUST00000211007.2	2241	2	6163	3	3305	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCCATGTTTATTTCCT	NA	False	NA	12	True	NA	NA	NA	11611733	11613247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_11611700_11613200
ENSMUSG00000045973.19_1	chr4	-	1920	3	FSM	ENSMUSG00000045973.19	ENSMUST00000107796.8	4433	3	13	2500	12	818	multi-exon	FALSE	canonical	3	68	junction_2	5.5	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGGGGTTTTAATGCA	-4	True	NA	NA	False	AATAAA	-18	NA	45408748	45398422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_45400180_45404726_45404836_45408694
ENSMUSG00000045973.19_2	chr4	-	1440	1	FSM	ENSMUSG00002074999.1	ENSMUST00020182372.1	125	1	-386	-929	-386	929	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGTTCTCTCTAGATTT	148	False	NA	-3	True	AATAAA	-18	NA	45397504	45396064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_45396100_45397500
ENSMUSG00000045973.19_6	chr4	-	1864	2	FSM	ENSMUSG00000045973.19	ENSMUST00000151516.2	718	2	30	-1176	30	815	multi-exon	FALSE	canonical	3	79	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTCAGGGGTTTTAAT	4620	False	NA	NA	False	AATAAA	-15	NA	45404836	45398425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_45400180_45404726
ENSMUSG00000045973.19_7	chr4	-	1273	1	ISM	ENSMUSG00000045973.19	ENSMUST00000107796.8	4433	3	9066	2500	5171	818	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGGGGTTTTAATGCA	9761	False	NA	NA	False	AATAAA	-18	NA	45399695	45398422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_45398400_45399700
ENSMUSG00000045973.19_9	chr4	-	1822	2	FSM	ENSMUSG00000045973.19	ENSMUST00000132815.3	1005	2	1	-818	1	818	multi-exon	FALSE	canonical	3	9	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGGGGTTTTAATGCA	-15	True	NA	NA	False	AATAAA	-18	NA	45408759	45398422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_45400180_45408694
ENSMUSG00000045975.9_0	chr16	-	2984	14	FSM	ENSMUSG00000045975.9	ENSMUST00000170757.3	6556	14	28	3544	1	-2	multi-exon	FALSE	canonical	3	55	junction_10	14.8455559863677	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTAAGTGTGTTCTAT	NA	False	NA	-7	True	ATTAAA	-10	NA	97723805	97659952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_97660777_97669791_97670117_97671352_97671481_97676328_97676443_97677419_97677595_97678307_97678433_97680809_97680875_97682788_97682895_97684472_97684597_97687287_97687411_97691213_97691319_97693389_97693510_97713805_97713905_97723254
ENSMUSG00000045975.9_1	chr16	-	2623	1	ISM	ENSMUSG00000045975.9	ENSMUST00000170757.3	6556	14	64794	8	2571	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCGAGTTGGTTCCGAG	494	False	NA	-6	True	AATAAA	-19	NA	97659039	97656416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_97656400_97659000
ENSMUSG00000045980.14_13	chr11	+	2147	1	ISM	ENSMUSG00000045980.14	ENSMUST00000100235.9	4561	10	57390	0	57326	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGTTGTCTCCTCTGTCAT	1658	False	NA	NA	False	AATAAA	-14	NA	115135702	115137849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115135700_115137800
ENSMUSG00000045980.14_2	chr11	+	3154	11	NNC	ENSMUSG00000045980.14	novel	4564	10	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	14.0032139168121	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTCTCCCTCTTGCTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	115078341	115136590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_115078425_115079035_115079149_115088061_115088184_115091645_115091728_115092141_115092239_115092957_115093039_115095887_115095988_115096300_115096410_115119246_115119341_115134195_115135637_115135758
ENSMUSG00000045980.14_3	chr11	+	3272	10	FSM	ENSMUSG00000045980.14	ENSMUST00000061450.7	4564	10	33	1259	9	0	multi-exon	FALSE	canonical	3	30	junction_1	6.92463842261461	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTCTCCCTCTTGCTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	115078345	115136590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115078425_115079035_115079149_115088061_115088184_115091645_115091728_115092141_115092239_115092957_115093039_115095887_115095988_115096300_115096410_115119246_115119341_115134195
ENSMUSG00000045983.17_17	chr16	+	5373	32	NIC	ENSMUSG00000045983.17	novel	5394	32	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	3	236	junction_1	347.040851712798	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTTTATTGCCTCTT	NA	False	NA	10	True	ATTAAA	-10	NA	20491518	20511627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_20491627_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500483_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ENSMUSG00000045983.17_2	chr16	+	5423	33	NIC	ENSMUSG00000045983.17	novel	5440	33	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	3	839	junction_14	252.911559316567	1121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTTTATTGCCTCTT	NA	False	NA	10	True	ATTAAA	-10	NA	20491522	20511627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ENSMUSG00000045983.17_246	chr16	+	4137	24	ISM	ENSMUSG00000045983.17	ENSMUST00000115460.8	5638	32	6092	2	1203	-2	3prime_fragment	FALSE	canonical	3	839	junction_5	242.734640832563	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTATTGCCTCTTTA	NA	False	NA	12	True	ATTAAA	-12	NA	20498358	20511629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ENSMUSG00000045983.17_4	chr16	+	5376	32	FSM	ENSMUSG00000045983.17	ENSMUST00000073840.12	5394	32	14	4	-7	-4	multi-exon	FALSE	canonical	3	236	junction_1	320.871770382026	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTTTATTGCCTCTT	NA	False	NA	10	True	ATTAAA	-10	NA	20491512	20511627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20491627_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ENSMUSG00000045983.17_7	chr16	+	5428	33	NIC	ENSMUSG00000045983.17	novel	5440	33	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	471	junction_14	285.078235903651	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTTTATTGCCTCTT	NA	False	NA	10	True	ATTAAA	-10	NA	20491520	20511627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500483_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ENSMUSG00000045996.13_0	chr15	+	390	4	FSM	ENSMUSG00000045996.13	ENSMUST00000180159.8	489	4	35	64	12	-64	multi-exon	FALSE	canonical	3	328	junction_3	234.864973028239	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATATGGCTTAATTTATT	144	False	NA	NA	False	TATAAA	-15	NA	36174190	36177089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_36174228_36175132_36175203_36175529_36175623_36176899
ENSMUSG00000045996.13_4	chr15	+	571	4	FSM	ENSMUSG00000045996.13	ENSMUST00000057177.7	601	4	27	3	27	0	multi-exon	FALSE	canonical	3	181	junction_1	282.916948944385	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCATTTCTATTCAATGT	159	False	NA	NA	False	ATTAAA	-12	NA	36174205	36177153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_36174360_36175132_36175203_36175529_36175623_36176899
ENSMUSG00000046000.6_0	chr5	-	3370	2	FSM	ENSMUSG00000046000.6	ENSMUST00000060265.6	3424	2	47	7	47	-7	multi-exon	FALSE	canonical	3	176	junction_1	0	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTGCATGAAGTGAGTTA	NA	False	NA	-10	True	AATAAA	-12	NA	97540191	97530063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_97532729_97539486
ENSMUSG00000046000.6_1	chr5	-	2142	1	ISM	ENSMUSG00000046000.6	ENSMUST00000060265.6	3424	2	8039	1	8039	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGAAGTGAGTTAATAACA	NA	False	NA	-4	True	AATAAA	-18	NA	97532199	97530057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_97530100_97532200
ENSMUSG00000046010.8_0	chr11	+	1578	1	FSM	ENSMUSG00000046010.8	ENSMUST00000056677.8	1591	1	7	6	7	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAGTGGATGGGTATTC	NA	False	NA	NA	False	CATAAA	-15	NA	82655177	82656755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_82655200_82656800
ENSMUSG00000046020.14_1	chr2	+	3406	7	FSM	ENSMUSG00000046020.14	ENSMUST00000049863.12	5600	7	17	2177	-1	7	multi-exon	FALSE	canonical	3	95	junction_4	7.06320670013903	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGAGGAGTGTTTCATAG	NA	False	NA	NA	False	AATAGA	-23	NA	153083469	153109990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153083646_153085557_153085680_153090368_153090552_153091600_153091714_153101519_153101713_153103117_153103361_153107614
ENSMUSG00000046020.14_12	chr2	+	3699	6	ISM	ENSMUSG00000046020.14	ENSMUST00000049863.12	5600	7	2103	1710	2058	474	3prime_fragment	FALSE	canonical	3	95	junction_3	7.52595508889071	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCCAGGAAAGTGCTAAC	NA	False	NA	NA	False	ATTAAA	-14	NA	153085555	153110457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_153085680_153090368_153090552_153091600_153091714_153101519_153101713_153103117_153103361_153107614
ENSMUSG00000046020.14_7	chr2	+	4989	3	FSM	ENSMUSG00000046020.14	ENSMUST00000152390.2	4833	3	2026	-2182	2026	-2	multi-exon	FALSE	canonical	3	101	junction_1	8	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAAAATGCATGCCTTCA	NA	False	NA	NA	False	NA	NA	NA	153101517	153112165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153101713_153103117_153103361_153107614
ENSMUSG00000046020.14_9	chr2	+	3226	1	ISM	ENSMUSG00000046020.14	ENSMUST00000049863.12	5600	7	25488	1	9449	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAATGCATGCCTTCAT	425	False	NA	NA	False	NA	NA	NA	153108940	153112166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_153108900_153112200
ENSMUSG00000046027.18_0	chr7	+	2430	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	43	10	2	-10	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATGGTATCTTGAGT	NA	False	NA	NA	False	ATTAAA	-13	NA	83281209	83291526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
ENSMUSG00000046027.18_15	chr7	+	1749	1	ISM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	8611	10	8017	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATGGTATCTTGAGT	NA	False	NA	NA	False	ATTAAA	-13	NA	83289777	83291526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_83289800_83291500
ENSMUSG00000046027.18_9	chr7	+	2374	5	NIC	ENSMUSG00000046027.18	novel	2483	6	NA	NA	-6	-8	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	73.39618518697	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGGTATCTTGAGTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	83281217	83291528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_83281348_83282337_83282471_83285958_83286077_83286811_83286906_83289629
ENSMUSG00000046031.8_0	chr10	-	794	2	FSM	ENSMUSG00000046031.8	ENSMUST00000062784.8	1094	2	293	7	293	-7	multi-exon	FALSE	canonical	3	41	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTAAGGCTGTTTCTCCC	NA	False	NA	NA	False	AATAAA	-10	NA	34003687	34002069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_34002563_34003386
ENSMUSG00000046032.17_1	chrX	-	1069	6	FSM	ENSMUSG00000046032.17	ENSMUST00000156473.8	1114	6	45	0	41	0	multi-exon	FALSE	canonical	3	192	junction_2	126.702170462861	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGCTAGTTTCT	NA	False	NA	-11	True	NA	NA	NA	100266114	100141391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUSG00000046032.17_10	chrX	-	2312	5	NNC	ENSMUSG00000046032.17	novel	1002	5	NA	NA	53	-6	at_least_one_novel_splicesite	FALSE	non_canonical	2	40	junction_1	181.166187518532	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAAGCCTCCGTTTTTCT	NA	False	NA	-21	True	ATTAAA	-9	NA	100266102	100255570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_100256360_100256403_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUSG00000046032.17_11	chrX	-	2368	4	FSM	ENSMUSG00000046032.17	ENSMUST00000120389.8	2415	4	41	6	41	-6	multi-exon	FALSE	canonical	3	422	junction_3	23.8094285712381	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAAGCCTCCGTTTTTCT	NA	False	NA	-21	True	ATTAAA	-9	NA	100266114	100255570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUSG00000046032.17_8	chrX	-	935	5	FSM	ENSMUSG00000046032.17	ENSMUST00000077876.4	1002	5	61	6	47	-6	multi-exon	FALSE	canonical	3	131	junction_1	142.088880634622	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAAGCCTCCGTTTTTCT	NA	False	NA	-21	True	ATTAAA	-9	NA	100266108	100255570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100255953_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUSG00000046034.9_16	chr15	-	2802	5	FSM	ENSMUSG00000046034.9	ENSMUST00000228439.2	811	5	-2	-1989	-2	-729	multi-exon	FALSE	canonical	3	12	junction_4	108.380118102907	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATAAGTCCCTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	27630766	27606733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_27608948_27611597_27611724_27616409_27616554_27619614_27619710_27630543
ENSMUSG00000046034.9_2	chr15	-	1475	7	FSM	ENSMUSG00000046034.9	ENSMUST00000059662.8	1491	7	11	5	-4	-5	multi-exon	FALSE	canonical	3	220	junction_2	23.0771652408946	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACAGTAGTTTTGTATT	NA	False	NA	-10	True	AATGAA	-35	NA	27630768	27606009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_27606548_27608677_27608948_27611597_27611724_27616409_27616554_27619614_27619710_27623367_27623445_27630543
ENSMUSG00000046034.9_4	chr15	-	1399	6	NIC	ENSMUSG00000046034.9	novel	1491	7	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	3	12	junction_5	98.7825895590918	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGTAGTTTTGTATTT	NA	False	NA	-9	True	AATGAA	-36	NA	27630768	27606008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_27606548_27608677_27608948_27611597_27611724_27616409_27616554_27619614_27619710_27630543
ENSMUSG00000046034.9_9	chr15	-	2872	6	ISM	ENSMUSG00000046034.9	ENSMUST00000059662.8	1491	7	20	729	5	-729	5prime_fragment	FALSE	canonical	3	220	junction_1	25.2713276263832	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATAAGTCCCTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	27630759	27606733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_27608948_27611597_27611724_27616409_27616554_27619614_27619710_27623367_27623445_27630543
ENSMUSG00000046058.8_0	chr7	+	1288	1	FSM	ENSMUSG00000046058.8	ENSMUST00000059596.8	1392	1	-7	111	-7	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATACCAATTTTCTGGG	NA	False	NA	14	True	CATAAA	-34	NA	27967298	27968586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27967300_27968600
ENSMUSG00000046062.6_0	chr1	+	5412	2	FSM	ENSMUSG00000046062.6	ENSMUST00000052529.4	5594	2	176	6	-25	-6	multi-exon	FALSE	canonical	3	372	junction_1	0	847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATGCTATGTGACTTT	5743	False	NA	9	True	AATAAA	-14	NA	133059056	133067515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_133061354_133064400
ENSMUSG00000046062.6_6	chr1	+	3730	2	FSM	ENSMUSG00000046062.6	ENSMUST00000122956.2	3688	2	-48	6	-48	-6	multi-exon	FALSE	canonical	3	18	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATGCTATGTGACTTT	5720	False	NA	9	True	AATAAA	-14	NA	133059033	133067515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_133059649_133064400
ENSMUSG00000046062.6_9	chr1	+	2097	1	ISM	ENSMUSG00000046062.6	ENSMUST00000052529.4	5594	2	6539	5	6338	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATGCTATGTGACTTTA	NA	False	NA	10	True	AATAAA	-15	NA	133065419	133067516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_133065400_133067500
ENSMUSG00000046070.10_0	chr17	+	2144	2	FSM	ENSMUSG00000046070.10	ENSMUST00000234862.2	995	2	179	-1328	179	-2	multi-exon	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTTGTGACCTAGAGTG	7352	False	NA	7	True	ATTAAA	-14	NA	25096808	25100982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25096897_25098926
ENSMUSG00000046070.10_1	chr17	+	2255	2	FSM	ENSMUSG00000046070.10	ENSMUST00000050714.8	2625	2	368	2	-131	-2	multi-exon	FALSE	canonical	3	22	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTTGTGACCTAGAGTG	8143	False	NA	7	True	ATTAAA	-14	NA	25097599	25100982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25097799_25098926
ENSMUSG00000046070.10_2	chr17	+	2574	2	FSM	ENSMUSG00000046070.10	ENSMUST00000234754.2	2064	2	-518	8	-19	-8	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCATAGCTTGTGACCT	7756	False	NA	1	True	ATTAAA	-8	NA	25097212	25100976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25097799_25098988
ENSMUSG00000046070.10_3	chr17	+	2209	2	FSM	ENSMUSG00000046070.10	ENSMUST00000234188.2	500	2	36	-1745	-7	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTTGTGACCTAGAGTG	7768	False	NA	7	True	ATTAAA	-14	NA	25097224	25100982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25097378_25098926
ENSMUSG00000046070.10_5	chr17	+	3312	1	NIC	ENSMUSG00000046070.10	novel	2625	2	NA	NA	-60	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTTGTGACCTAGAGTG	8214	False	NA	7	True	ATTAAA	-14	NA	25097670	25100982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25097700_25101000
ENSMUSG00000046079.17_0	chr5	+	3875	3	FSM	ENSMUSG00000046079.17	ENSMUST00000060531.16	3923	3	30	18	30	-13	multi-exon	FALSE	canonical	3	145	junction_1	205.5	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTTTATCTAAATCGTAGT	4101	False	NA	6	True	AATAAA	-17	NA	105847864	105963063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_105848121_105880095_105880241_105959589
ENSMUSG00000046079.17_19	chr5	+	3837	3	FSM	ENSMUSG00000046079.17	ENSMUST00000120847.8	3929	3	78	14	1	-14	multi-exon	FALSE	canonical	3	312	junction_1	122	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTTTATCTAAATCGTAG	4969	False	NA	5	True	AATAAA	-16	NA	105848732	105963062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_105848952_105880095_105880241_105959589
ENSMUSG00000046079.17_42	chr5	+	2578	1	ISM	ENSMUSG00000046079.17	ENSMUST00000060531.16	3923	3	112654	15	-11888	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATCTAAATCGTAGTGGT	NA	False	NA	9	True	AATAAA	-20	NA	105960488	105963066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_105960500_105963100
ENSMUSG00000046096.8_0	chr7	+	4249	3	FSM	ENSMUSG00000046096.8	ENSMUST00000060175.8	4831	3	-15	597	-2	-14	multi-exon	FALSE	canonical	3	80	junction_2	55.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAACTAAAAAGGCTTC	NA	False	NA	NA	False	AATAAA	-10	NA	120276838	120333480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_120277094_120325342_120325556_120329699
ENSMUSG00000046096.8_1	chr7	+	4181	4	FSM	ENSMUSG00000046096.8	ENSMUST00000208627.2	345	4	-73	-3763	-11	-14	multi-exon	FALSE	canonical	3	73	junction_1	54.0514158515349	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAACTAAAAAGGCTTC	NA	False	NA	NA	False	AATAAA	-10	NA	120276829	120333480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_120276936_120277012_120277094_120325342_120325556_120329699
ENSMUSG00000046096.8_12	chr7	+	2554	1	ISM	ENSMUSG00000046096.8	ENSMUST00000060175.8	4831	3	54073	597	3380	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAACTAAAAAGGCTTC	2230	False	NA	NA	False	AATAAA	-10	NA	120330926	120333480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_120330900_120333500
ENSMUSG00000046096.8_14	chr7	+	734	3	ISM	ENSMUSG00000046096.8	ENSMUST00000208627.2	345	4	-72	3827	-10	-5	5prime_fragment	FALSE	canonical	3	73	junction_1	59	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATATAACTTAGGTGA	NA	False	NA	7	True	AATAAA	-13	NA	120276830	120325890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_120276936_120277012_120277094_120325342
ENSMUSG00000046096.8_2	chr7	+	806	2	FSM	ENSMUSG00000046096.8	ENSMUST00000208454.2	813	2	-7	14	-5	-5	multi-exon	FALSE	canonical	3	191	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATATAACTTAGGTGA	NA	False	NA	7	True	AATAAA	-13	NA	120276835	120325890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_120277094_120325342
ENSMUSG00000046096.8_3	chr7	+	2355	3	NIC	ENSMUSG00000046096.8	novel	4831	3	NA	NA	2	-14	intron_retention	FALSE	canonical	3	16	junction_2	87.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAACTAAAAAGGCTTC	NA	False	NA	NA	False	AATAAA	-10	NA	120276844	120333480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_120277094_120325342_120325556_120331587
ENSMUSG00000046096.8_4	chr7	+	2302	4	NIC	ENSMUSG00000046096.8	novel	345	4	NA	NA	-20	-14	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	72.8758457164573	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAACTAAAAAGGCTTC	NA	False	NA	NA	False	AATAAA	-10	NA	120276820	120333480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_120276936_120277012_120277094_120325342_120325556_120331587
ENSMUSG00000046101.17_0	chr1	+	1500	9	ISM	ENSMUSG00000046101.17	ENSMUST00000171802.8	2553	15	-6	19958	-6	-270	5prime_fragment	TRUE	canonical	3	16	junction_7	6.88748865697795	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCGAAATAACCAGATCTTG	NA	False	NA	NA	False	GATAAA	-11	NA	9978856	9991221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_9978916_9981899_9982038_9982134_9982266_9982338_9982399_9985698_9985895_9986540_9986664_9986774_9986880_9989244_9989371_9990659
ENSMUSG00000046101.17_12	chr1	+	2453	14	NIC	ENSMUSG00000046101.17	novel	2553	15	NA	NA	4	-36	intron_retention	FALSE	canonical	1	3	junction_3	10.2131137420325	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGGAAAAATTAC	NA	False	NA	NA	False	NA	NA	NA	9978866	10011143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_9978916_9981899_9982038_9982134_9982266_9985698_9985895_9986540_9986664_9986774_9986880_9989244_9989371_9990659_9990898_9994281_9994488_10001005_10001173_10002226_10002407_10004147_10004291_10007220_10007331_10010602
ENSMUSG00000046101.17_18	chr1	+	911	4	ISM	ENSMUSG00000046101.17	ENSMUST00000171802.8	2553	15	23427	36	-55	-36	3prime_fragment	FALSE	canonical	2	3	junction_1	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGGAAAAATTAC	NA	False	NA	NA	False	NA	NA	NA	10002289	10011143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_10002407_10004147_10004291_10007220_10007331_10010602
ENSMUSG00000046101.17_5	chr1	+	1574	10	NIC	ENSMUSG00000046101.17	novel	2826	10	NA	NA	1	-34	combination_of_known_junctions	FALSE	canonical	3	10	junction_9	7.71402442564879	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9978863	9991457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_9978916_9981899_9982038_9982134_9982266_9982338_9982399_9985698_9985895_9986540_9986664_9986774_9986880_9989244_9989371_9990659_9990898_9991052
ENSMUSG00000046101.17_6	chr1	+	2536	15	FSM	ENSMUSG00000046101.17	ENSMUST00000171802.8	2553	15	-1	18	-1	-18	multi-exon	FALSE	canonical	2	3	junction_12	9.43857694220254	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTCATGCCCCATAAGC	NA	False	NA	NA	False	NA	NA	NA	9978861	10011161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_9978916_9981899_9982038_9982134_9982266_9982338_9982399_9985698_9985895_9986540_9986664_9986774_9986880_9989244_9989371_9990659_9990898_9994281_9994488_10001005_10001173_10002226_10002407_10004147_10004291_10007220_10007331_10010602
ENSMUSG00000046111.18_15	chr9	-	7505	28	NIC	ENSMUSG00000046111.19	novel	7605	28	NA	NA	57	20	intron_retention	FALSE	canonical	3	87	junction_6	27.9548921391772	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTTATTTATTTTTAA	9764	False	NA	-51	True	TATAAA	-17	NA	15269027	15228261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235010_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ENSMUSG00000046111.18_2	chr9	-	7308	27	FSM	ENSMUSG00000046111.19	ENSMUST00000098979.12	7188	27	57	-177	57	0	multi-exon	FALSE	canonical	3	46	junction_7	32.7214575925683	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGATTCCTTTGCTGTCC	9764	False	NA	-5	True	AATAAA	-12	NA	15269027	15228215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235007_15235444_15235588_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ENSMUSG00000046111.18_4	chr9	-	4021	14	ISM	ENSMUSG00000046111.19	ENSMUST00000161132.10	7605	28	24172	-3	-117	0	3prime_fragment	TRUE	canonical	3	110	junction_2	29.0025503877518	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCTTTGCTGTCCATC	NA	False	NA	-2	True	AATAAA	-15	NA	15244912	15228212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235007_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231
ENSMUSG00000046111.18_42	chr9	-	3941	14	NIC	ENSMUSG00000046111.19	novel	7605	28	NA	NA	-104	-1	combination_of_known_junctions	FALSE	canonical	3	87	junction_6	33.440046148152	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGGTTCTTTTTACTG	NA	False	NA	-72	True	AATAAA	-37	NA	15244899	15228282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235010_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231
ENSMUSG00000046111.18_5	chr9	-	7551	28	FSM	ENSMUSG00000046111.19	ENSMUST00000161132.10	7605	28	57	-3	57	0	multi-exon	FALSE	canonical	3	110	junction_2	25.4723282440542	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCTTTGCTGTCCATC	9764	False	NA	-2	True	AATAAA	-15	NA	15269027	15228212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235007_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ENSMUSG00000046111.18_53	chr9	-	6782	23	ISM	ENSMUSG00000046111.19	ENSMUST00000098979.12	7188	27	57	5368	57	534	5prime_fragment	FALSE	canonical	3	46	junction_3	33.1414449277763	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATGAAAAGCCTCACTT	9764	False	NA	-7	True	ATTAAA	-12	NA	15269027	15233760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_15234380_15234864_15235007_15235444_15235588_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ENSMUSG00000046111.18_54	chr9	-	7020	24	NIC	ENSMUSG00000046111.19	novel	7605	28	NA	NA	66	538	intron_retention	FALSE	canonical	3	87	junction_2	27.1516082372237	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAGCCTCACTTCAGA	9773	False	NA	-3	True	ATTAAA	-16	NA	15269018	15233756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_15234380_15234864_15235010_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ENSMUSG00000046111.18_55	chr9	-	7022	24	ISM	ENSMUSG00000046111.19	ENSMUST00000161132.10	7605	28	57	5545	57	534	5prime_fragment	FALSE	canonical	3	121	junction_16	23.6825252830166	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATGAAAAGCCTCACTT	9764	False	NA	-7	True	ATTAAA	-12	NA	15269027	15233760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_15234380_15234864_15235007_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ENSMUSG00000046111.18_67	chr9	-	6798	23	NIC	ENSMUSG00000046111.19	novel	7188	27	NA	NA	59	549	intron_retention	FALSE	canonical	3	46	junction_3	35.5783386601761	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTCAGACACTCATTTTC	9766	False	NA	8	True	ATTAAA	-27	NA	15269025	15233745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_15234380_15234864_15235010_15235444_15235588_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ENSMUSG00000046111.18_87	chr9	-	5777	19	ISM	ENSMUSG00000046111.19	ENSMUST00000098979.12	7188	27	57	9542	57	-1034	5prime_fragment	FALSE	canonical	3	121	junction_11	21.7278338872539	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCGTACTATTTGGTGTA	9764	False	NA	NA	False	NA	NA	NA	15269027	15237934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
ENSMUSG00000046133.4_1	chr4	-	899	3	FSM	ENSMUSG00000046133.4	ENSMUST00000051043.4	913	3	10	4	10	-4	multi-exon	FALSE	canonical	3	233	junction_2	115.5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATTTGTTTTTCTTCTTG	NA	False	NA	-6	True	ATTAAA	-22	NA	101750976	101747220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_101747741_101747885_101748198_101750909
ENSMUSG00000046133.4_2	chr4	-	1004	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9900	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	190.887983441133	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATTTGTTTTTCTTCTTG	NA	False	NA	-6	True	ATTAAA	-22	NA	101760886	101747220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_101747741_101747885_101748198_101760342_101760431_101760802
ENSMUSG00000046133.4_3	chr4	-	1376	3	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9900	-4	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_2	141	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATTTGTTTTTCTTCTTG	NA	False	NA	-6	True	ATTAAA	-22	NA	101760886	101747220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_101747741_101747885_101748198_101760342
ENSMUSG00000046133.4_4	chr4	-	835	2	ISM	ENSMUSG00000046133.4	ENSMUST00000051043.4	913	3	2788	2	2788	-2	3prime_fragment	FALSE	canonical	3	464	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGTTTTTCTTCTTGAT	NA	False	NA	-4	True	ATTAAA	-24	NA	101748198	101747218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_101747741_101747885
ENSMUSG00000046138.16_0	chr19	-	7146	8	FSM	ENSMUSG00000046138.16	ENSMUST00000175726.8	7524	8	-534	912	-52	-1	multi-exon	FALSE	canonical	3	13	junction_4	4.32364170012044	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTTTGTTTGAATACCA	3868	False	NA	-1	True	AATAAA	-13	NA	29783441	29692713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_29697007_29697985_29698174_29700789_29700906_29712515_29712606_29720932_29721013_29730999_29732418_29763648_29763850_29782681
ENSMUSG00000046138.16_1	chr19	-	2732	1	ISM	ENSMUSG00000046138.16	ENSMUST00000175726.8	7524	8	87462	912	25567	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTTTGTTTGAATACCA	NA	False	NA	-1	True	AATAAA	-13	NA	29695445	29692713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_29692700_29695400
ENSMUSG00000046138.16_12	chr19	-	4588	3	ISM	ENSMUSG00000046138.16	ENSMUST00000175764.9	4678	4	20116	1	20116	-1	3prime_fragment	FALSE	canonical	3	21	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTTTGTTTGAATACCA	NA	False	NA	-1	True	AATAAA	-13	NA	29700896	29692713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_29697007_29697985_29698174_29700789
ENSMUSG00000046138.16_15	chr19	-	2706	3	ISM	ENSMUSG00000046138.16	ENSMUST00000175726.8	7524	8	-1029	39366	-547	-33046	5prime_fragment	FALSE	canonical	3	16	junction_1	4	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAGAAGAAAAAGAAA	3373	False	NA	NA	False	ACTAAA	-8	NA	29783936	29731167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_29732418_29763648_29763850_29782681
ENSMUSG00000046138.16_2	chr19	-	5612	6	ISM	ENSMUSG00000046138.16	ENSMUST00000177155.8	6632	7	51545	-261	-782	-1	3prime_fragment	FALSE	canonical	3	13	junction_4	4.4	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTTTGTTTGAATACCA	NA	False	NA	-1	True	AATAAA	-13	NA	29731844	29692713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_29697007_29697985_29698174_29700789_29700906_29712515_29712606_29720932_29721013_29730999
ENSMUSG00000046138.16_7	chr19	-	6948	7	FSM	ENSMUSG00000046138.16	ENSMUST00000177155.8	6632	7	-55	-261	-55	-1	multi-exon	FALSE	canonical	1	2	junction_6	8.20568908339411	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTTTGTTTGAATACCA	3865	False	NA	-1	True	AATAAA	-13	NA	29783444	29692713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_29697007_29697985_29698174_29700789_29700906_29712515_29712606_29720932_29721013_29730999_29732418_29782681
ENSMUSG00000046139.9_0	chr19	+	4046	19	FSM	ENSMUSG00000046139.9	ENSMUST00000061618.9	4216	19	44	126	0	-126	multi-exon	FALSE	canonical	3	210	junction_1	27.8366043764299	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGTGTGCTTTATACC	NA	False	NA	2	True	AATAAA	-16	NA	11889806	11922329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_11889942_11891711_11891824_11897541_11897760_11898168_11898250_11898732_11898928_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
ENSMUSG00000046139.9_39	chr19	+	3696	17	ISM	ENSMUSG00000046139.9	ENSMUST00000061618.9	4216	19	7881	127	7837	-127	3prime_fragment	FALSE	canonical	3	247	junction_6	23.5474919046594	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATGTGTGCTTTATAC	NA	False	NA	1	True	AATAAA	-15	NA	11897643	11922328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_11897760_11898168_11898250_11898732_11898928_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
ENSMUSG00000046139.9_5	chr19	+	4120	20	FSM	ENSMUSG00000046139.9	ENSMUST00000238190.2	3158	20	1	-963	1	-125	multi-exon	FALSE	canonical	3	28	junction_5	81.8323060642279	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTGCTTTATACCT	NA	False	NA	3	True	AATAAA	-17	NA	11889807	11922330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_11889942_11891711_11891824_11897541_11897760_11898168_11898250_11898732_11898928_11899284_11899359_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
ENSMUSG00000046152.17_0	chr8	+	2917	4	FSM	ENSMUSG00000046152.17	ENSMUST00000161788.8	2962	4	42	3	27	-3	multi-exon	FALSE	canonical	3	13	junction_3	13.29995822884	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTCCACTGTCGCAGACT	NA	False	NA	3	True	AATAAA	-13	NA	31677401	31727819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31725622
ENSMUSG00000046152.17_13	chr8	+	3339	7	NIC	ENSMUSG00000046152.17	novel	3527	6	NA	NA	29	4	combination_of_known_junctions	FALSE	canonical	1	4	junction_2	15.195028426722	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAAGAAATGTATTCTTT	NA	False	NA	6	True	AATAAA	-19	NA	31677403	31751507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_31677491_31678329_31678435_31684981_31685318_31691237_31691533_31715829_31715930_31725622_31726459_31749927
ENSMUSG00000046152.17_2	chr8	+	3238	6	NIC	ENSMUSG00000046152.17	novel	3183	5	NA	NA	29	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_3	16.1195533436879	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTATTCTTTGGAG	NA	False	NA	10	True	AATAAA	-23	NA	31677403	31751511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_31677491_31684981_31685318_31691237_31691533_31715829_31715930_31725622_31726459_31749927
ENSMUSG00000046152.17_20	chr8	+	2566	1	NIC	ENSMUSG00000046152.17	novel	3183	5	NA	NA	33956	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTCCACTGTCGCAGAC	NA	False	NA	2	True	AATAAA	-12	NA	31725252	31727818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_31725300_31727800
ENSMUSG00000046152.17_21	chr8	+	1370	1	ISM	ENSMUSG00000046152.17	ENSMUST00000066173.12	3183	5	72781	2	58843	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGAAATGTATTCTTTGG	NA	False	NA	8	True	AATAAA	-21	NA	31750139	31751509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_31750100_31751500
ENSMUSG00000046152.17_26	chr8	+	2114	2	ISM	ENSMUSG00000046152.17	ENSMUST00000066173.12	3183	5	48568	2	34630	-2	3prime_fragment	FALSE	canonical	3	29	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGAAATGTATTCTTTGG	NA	False	NA	8	True	AATAAA	-21	NA	31725926	31751509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_31726459_31749927
ENSMUSG00000046152.17_28	chr8	+	2202	3	ISM	ENSMUSG00000046152.17	ENSMUST00000110527.9	2327	4	7624	-8	-6302	0	3prime_fragment	FALSE	canonical	0	0	junction_2	21.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTATTCTTTGGAG	NA	False	NA	10	True	AATAAA	-23	NA	31684994	31751511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_31685318_31691237_31691533_31749927
ENSMUSG00000046152.17_5	chr8	+	2309	4	FSM	ENSMUSG00000046152.17	ENSMUST00000110527.9	2327	4	25	-7	21	-1	multi-exon	FALSE	canonical	0	0	junction_3	19.3964487013015	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAAATGTATTCTTTGGA	NA	False	NA	9	True	AATAAA	-22	NA	31677395	31751510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31749927
ENSMUSG00000046152.17_7	chr8	+	3030	5	NIC	ENSMUSG00000046152.17	novel	2962	4	NA	NA	13	-4	combination_of_known_junctions	FALSE	canonical	1	4	junction_3	17.8378109643532	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTCCACTGTCGCAGAC	NA	False	NA	2	True	AATAAA	-12	NA	31677387	31727818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_31677491_31684981_31685318_31691237_31691533_31715829_31715930_31725622
ENSMUSG00000046152.17_8	chr8	+	3138	5	FSM	ENSMUSG00000046152.17	ENSMUST00000066173.12	3183	5	43	2	27	-2	multi-exon	FALSE	canonical	3	13	junction_3	11.5758369027902	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGAAATGTATTCTTTGG	NA	False	NA	8	True	AATAAA	-21	NA	31677401	31751509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31725622_31726459_31749927
ENSMUSG00000046152.17_9	chr8	+	2155	5	ISM	ENSMUSG00000046152.17	ENSMUST00000161502.2	3527	6	0	24841	0	868	5prime_fragment	FALSE	canonical	2	4	junction_2	15.833114033569	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAGGCTTGGAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	31677374	31726925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_31677491_31678329_31678435_31684981_31685318_31691237_31691533_31725622
ENSMUSG00000046157.14_0	chr12	-	3871	3	FSM	ENSMUSG00000046157.14	ENSMUST00000056660.13	3860	3	-9	-2	-9	-1	multi-exon	FALSE	canonical	3	11	junction_2	2.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGGCTGTGACCCATCT	NA	False	NA	-4	True	CATAAA	-23	NA	79054060	79008571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_79011948_79024534_79024716_79053746
ENSMUSG00000046157.14_1	chr12	-	2229	1	ISM	ENSMUSG00000046157.14	ENSMUST00000070174.14	3656	3	19454	1	16739	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGCTGTGACCCATCTGT	6577	False	NA	-2	True	CATAAA	-25	NA	79010798	79008569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79008600_79010800
ENSMUSG00000046157.14_2	chr12	-	3875	3	NIC	ENSMUSG00000046157.14	novel	3621	3	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	1.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGCTGTGACCCATCTG	NA	False	NA	-3	True	CATAAA	-24	NA	79054060	79008570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_79011951_79024534_79024716_79053746
ENSMUSG00000046157.14_3	chr12	-	3656	3	FSM	ENSMUSG00000046157.14	ENSMUST00000174721.8	537	3	-64	-3055	-64	1	multi-exon	FALSE	canonical	3	8	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTGACCCATCTGTTC	NA	False	NA	0	True	CATAAA	-27	NA	79054178	79008567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_79011951_79024534_79024716_79054086
ENSMUSG00000046157.14_7	chr12	-	3656	3	NIC	ENSMUSG00000046157.14	novel	3621	3	NA	NA	-70	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	3	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGCTGTGACCCATCTG	NA	False	NA	-3	True	CATAAA	-24	NA	79054184	79008570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_79011948_79024534_79024716_79054086
ENSMUSG00000046160.7_0	chr16	+	2206	1	FSM	ENSMUSG00000046160.7	ENSMUST00000056882.7	2162	1	-46	2	-46	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTACGTTTTTCGTCT	2371	False	NA	NA	False	AATAAA	-14	NA	91066613	91068819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91066600_91068800
ENSMUSG00000046173.4_0	chr17	-	3167	1	FSM	ENSMUSG00000046173.4	ENSMUST00000057190.4	3223	1	29	27	29	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACAAATTAATTTTTTA	NA	False	NA	NA	False	AATAAA	-13	NA	9888617	9885450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_9885400_9888600
ENSMUSG00000046179.18_0	chr7	-	3567	13	FSM	ENSMUSG00000046179.18	ENSMUST00000119223.2	3499	13	-76	8	-76	-8	multi-exon	FALSE	canonical	3	85	junction_12	21.1073644336126	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCACTTAACATTTTC	NA	False	NA	-9	True	ATTAAA	-9	NA	48531420	48516184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_48516978_48517401_48517788_48517906_48518040_48520438_48520965_48521560_48521649_48521833_48522035_48523007_48523146_48524719_48524882_48525204_48525520_48527689_48527847_48528172_48528452_48530025_48530150_48531155
ENSMUSG00000046179.18_1	chr7	-	3667	13	FSM	ENSMUSG00000046179.18	ENSMUST00000058745.15	3691	13	16	8	16	-8	multi-exon	FALSE	canonical	3	118	junction_12	14.9024606469312	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCACTTAACATTTTC	NA	False	NA	-9	True	ATTAAA	-9	NA	48530773	48516184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_48516978_48517401_48517788_48517906_48518040_48520438_48520965_48521560_48521649_48521833_48522035_48523007_48523146_48524719_48524882_48525204_48525520_48527689_48527847_48528172_48528452_48530025_48530150_48530408
ENSMUSG00000046180.12_0	chrX	+	1550	2	FSM	ENSMUSG00000046180.12	ENSMUST00000062542.5	1572	2	21	1	21	-1	multi-exon	FALSE	canonical	3	101	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTCAGCAGTGTTTGTT	NA	False	NA	12	True	AATAAA	-17	NA	57956841	57965663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_57956922_57964193
ENSMUSG00000046185.11_1	chr7	+	2934	5	FSM	ENSMUSG00000046185.11	ENSMUST00000032802.5	4113	5	27	1152	27	-1152	multi-exon	FALSE	canonical	3	71	junction_4	7.79021822544144	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCAGAATTACACATTAT	NA	False	NA	NA	False	AATAAA	-12	NA	29468003	29478094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29468121_29470763_29470829_29474762_29474890_29475329_29475417_29475556
ENSMUSG00000046185.11_6	chr7	+	1731	1	ISM	ENSMUSG00000046185.11	ENSMUST00000032802.5	4113	5	8405	1134	8405	-1134	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATACAATAATCAATGAAT	NA	False	NA	NA	False	AATAAA	-30	NA	29476381	29478112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_29476400_29478100
ENSMUSG00000046186.9_0	chr9	+	4661	33	FSM	ENSMUSG00000046186.9	ENSMUST00000093812.5	5860	33	303	896	86	-896	multi-exon	FALSE	canonical	0	0	junction_8	1.55623744974859	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCTGTTTTGTAAAAGAT	2402	False	NA	NA	False	AATAAA	-17	NA	78523130	78622639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_78523235_78524158_78524332_78541928_78541958_78543730_78543962_78549260_78549387_78561841_78561882_78564726_78564812_78567544_78567642_78568173_78568334_78568934_78569045_78571484_78571701_78572725_78572828_78572917_78572981_78574520_78574698_78576984_78577138_78579192_78579268_78579833_78579895_78587302_78587445_78588084_78588203_78592116_78592231_78596011_78596231_78596990_78597136_78598470_78598648_78603101_78603184_78605364_78605594_78607476_78607643_78610317_78610506_78610934_78611091_78612319_78612386_78614725_78614866_78617414_78617563_78619818_78619922_78622173
ENSMUSG00000046201.10_1	chr17	+	4871	20	NNC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	-5	-4	at_least_one_novel_splicesite	TRUE	canonical	3	32	junction_7	33.7657729635013	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACAGTGTTCTAGGAATT	9434	False	NA	7	True	AATAAA	-14	NA	3165241	3249130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219604_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034
ENSMUSG00000046201.10_14	chr17	+	4924	21	NIC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	37.9476942646059	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACAGTGTTCTAGGAATT	9446	False	NA	7	True	AATAAA	-14	NA	3165253	3249130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_3165694_3172327_3172390_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034
ENSMUSG00000046201.10_3	chr17	+	4874	20	FSM	ENSMUSG00000046201.10	ENSMUST00000076734.8	4866	20	-12	4	-5	-4	multi-exon	FALSE	canonical	3	106	junction_1	21.7366509485669	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACAGTGTTCTAGGAATT	9434	False	NA	7	True	AATAAA	-14	NA	3165241	3249130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034
ENSMUSG00000046201.10_69	chr17	+	1478	1	ISM	ENSMUSG00000046201.10	ENSMUST00000076734.8	4866	20	82399	4	82129	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACAGTGTTCTAGGAATT	7804	False	NA	7	True	AATAAA	-14	NA	3247652	3249130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_3247700_3249100
ENSMUSG00000046201.10_8	chr17	+	4771	21	NIC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	-5	59407	combination_of_known_splicesites	FALSE	canonical	3	64	junction_20	27.9703414351702	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9434	False	NA	67	True	NA	NA	NA	3165241	3308541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034_3248499_3308012
ENSMUSG00000046204.15_0	chr14	+	4501	3	FSM	ENSMUSG00000046204.15	ENSMUST00000089236.11	5518	3	48	969	10	-969	multi-exon	FALSE	canonical	3	15	junction_1	6.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCGTGAGTTGTTTTCTG	NA	False	NA	13	True	AATAAA	-13	NA	67148666	67157503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_67148743_67152770_67152900_67153207
ENSMUSG00000046204.15_1	chr14	+	4658	4	NNC	ENSMUSG00000046204.15	novel	5518	3	NA	NA	-5	-970	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	11.7756811551038	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATCGTGAGTTGTTTTCT	NA	False	NA	12	True	AATAAA	-12	NA	67148685	67157502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_67148743_67151755_67151933_67152770_67152900_67153207
ENSMUSG00000046204.15_4	chr14	+	4432	2	ISM	ENSMUSG00000046204.15	ENSMUST00000165831.2	855	3	1006	-4026	1006	-962	3prime_fragment	FALSE	canonical	3	28	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTTTTCTGCTTCCTA	NA	False	NA	20	True	AATAAA	-20	NA	67152770	67157510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_67152900_67153207
ENSMUSG00000046204.15_5	chr14	+	3212	1	ISM	ENSMUSG00000046204.15	ENSMUST00000089236.11	5518	3	5669	973	2523	-973	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAATCGTGAGTTGTTT	NA	False	NA	9	True	AATAAA	-9	NA	67154287	67157499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_67154300_67157500
ENSMUSG00000046215.4_0	chr11	+	1071	1	FSM	ENSMUSG00000046215.4	ENSMUST00000057870.4	1010	1	-67	6	-67	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCTAACTGTGCCGTGT	NA	False	NA	NA	False	AATAAA	-25	NA	103540328	103541399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_103540300_103541400
ENSMUSG00000046223.11_1	chr7	+	1496	7	FSM	ENSMUSG00000046223.11	ENSMUST00000002284.11	1506	7	4	6	3	-6	multi-exon	FALSE	canonical	3	18	junction_3	5.84284938098603	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCATGCCTGGCTAGGT	NA	False	NA	NA	False	NA	NA	NA	24161912	24175386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24161993_24164555_24164667_24166099_24166244_24171323_24171480_24171997_24172133_24173634_24173782_24174663
ENSMUSG00000046229.11_0	chr2	-	587	2	FSM	ENSMUSG00000046229.11	ENSMUST00000079125.8	803	2	212	4	212	-4	multi-exon	FALSE	canonical	3	384	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATGTCTGCTGTGTCTTG	NA	False	NA	-8	True	AATAAA	-19	NA	156154455	156153769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156154323_156154421
ENSMUSG00000046229.11_1	chr2	-	661	1	NIC	ENSMUSG00000046229.11	novel	803	2	NA	NA	237	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATGTCTGCTGTGTCTTG	NA	False	NA	-8	True	AATAAA	-19	NA	156154430	156153769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_156153800_156154400
ENSMUSG00000046230.12_1	chr19	-	10842	72	FSM	ENSMUSG00000046230.12	ENSMUST00000068156.8	10838	72	-10	6	-4	-6	multi-exon	TRUE	canonical	3	25	junction_58	9.97459578127363	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCTGTTTGGTCAATGG	NA	False	NA	-33	True	CATAAA	-10	NA	16758301	16593055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_16594280_16596457_16596533_16596741_16596866_16597987_16598074_16613132_16613245_16617353_16617478_16617565_16617612_16617900_16618065_16618147_16618224_16618921_16619036_16621112_16621195_16623212_16623359_16624956_16625071_16628782_16628889_16630050_16630121_16631204_16631287_16631704_16631852_16632572_16632724_16633222_16633456_16635967_16636098_16637811_16637946_16638360_16638490_16641115_16641263_16641371_16641477_16641872_16642269_16643517_16643801_16645961_16646066_16653409_16653571_16655217_16655474_16655608_16655768_16657373_16657476_16659233_16659591_16660147_16660241_16662641_16662875_16663792_16664008_16664447_16664618_16665310_16665436_16669110_16669262_16672822_16672971_16676171_16676477_16678484_16678653_16680867_16680972_16681051_16681169_16681895_16682050_16683238_16683299_16684690_16684771_16687634_16687792_16688150_16688306_16692412_16692492_16697692_16697832_16699758_16699877_16701003_16701137_16702920_16703058_16712078_16712194_16712278_16712466_16718126_16718270_16718540_16718636_16719802_16719933_16720359_16720423_16722149_16722322_16723024_16723132_16723314_16723443_16726889_16726948_16727210_16727292_16727485_16727546_16729482_16729543_16731615_16731726_16736950_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
ENSMUSG00000046230.12_11	chr19	-	3129	19	ISM	ENSMUSG00000046230.12	ENSMUST00000068156.8	10838	72	124983	6	8704	-6	3prime_fragment	TRUE	canonical	3	37	junction_3	9.05691877946235	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCTGTTTGGTCAATGG	NA	False	NA	-33	True	CATAAA	-10	NA	16633308	16593055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_16594280_16596457_16596533_16596741_16596866_16597987_16598074_16613132_16613245_16617353_16617478_16617565_16617612_16617900_16618065_16618147_16618224_16618921_16619036_16621112_16621195_16623212_16623359_16624956_16625071_16628782_16628889_16630050_16630121_16631204_16631287_16631704_16631852_16632572_16632724_16633222
ENSMUSG00000046230.12_15	chr19	-	4003	25	ISM	ENSMUSG00000046230.12	ENSMUST00000068156.8	10838	72	116298	45	19	-45	3prime_fragment	FALSE	canonical	3	31	junction_23	9.69670261824434	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGCATGTGTTACCAAC	NA	False	NA	-72	True	NA	NA	NA	16641993	16593094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_16594280_16596457_16596533_16596741_16596866_16597987_16598074_16613132_16613245_16617353_16617478_16617565_16617612_16617900_16618065_16618147_16618224_16618921_16619036_16621112_16621195_16623212_16623359_16624956_16625071_16628782_16628889_16630050_16630121_16631204_16631287_16631704_16631852_16632572_16632724_16633222_16633456_16635967_16636098_16637811_16637946_16638360_16638490_16641115_16641263_16641371_16641477_16641872
ENSMUSG00000046230.12_22	chr19	-	12387	69	NIC	ENSMUSG00000046230.12	novel	2939	22	NA	NA	-21	-1	intron_retention	TRUE	canonical	3	14	junction_1	10.4210140870299	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGTGTGGATTTTTTTT	NA	False	NA	0	True	AATAAA	-14	NA	16758318	16609920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_16612958_16613132_16613245_16617353_16617478_16617565_16617612_16617900_16618065_16618147_16618224_16618921_16619036_16621112_16621195_16623212_16623359_16624956_16625071_16628782_16628889_16630050_16630121_16631204_16631287_16631704_16631852_16632572_16632724_16633222_16633456_16635967_16636098_16637811_16637946_16638360_16638490_16641115_16641263_16641371_16641477_16641872_16642269_16643517_16643801_16645961_16646066_16653409_16653571_16655217_16655474_16655608_16655768_16657373_16657476_16659233_16659591_16660147_16660241_16662641_16662875_16663792_16664008_16664447_16664618_16665310_16665436_16669110_16669262_16672822_16672971_16676171_16676477_16678484_16678653_16680867_16680972_16681051_16681169_16681895_16682050_16683238_16683299_16684690_16684771_16687634_16687792_16688150_16688306_16692412_16692492_16697692_16697832_16699758_16699877_16701003_16701137_16702920_16703058_16712078_16712194_16712278_16712466_16718126_16718270_16718540_16718636_16719802_16719933_16720359_16720423_16722149_16722322_16723024_16723132_16723314_16723443_16726889_16726948_16727210_16727292_16727485_16727546_16729482_16729543_16731615_16731726_16736950_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
ENSMUSG00000046230.12_30	chr19	-	8985	44	NIC	ENSMUSG00000046230.12	novel	10838	72	NA	NA	-4	-9098	intron_retention	FALSE	canonical	3	25	junction_30	6.13891822132118	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATATGTTAGTTGATCTT	NA	False	NA	NA	False	AATAAA	-14	NA	16758301	16652209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_16655474_16655608_16655768_16657373_16657476_16659233_16659591_16660147_16660241_16662641_16662875_16663792_16664008_16664447_16664618_16665310_16665436_16669110_16669262_16672822_16672971_16676171_16676477_16678484_16678653_16680867_16680972_16681051_16681169_16681895_16682050_16683238_16683299_16684690_16684771_16687634_16687792_16688150_16688306_16692412_16692492_16697692_16697832_16699758_16699877_16701003_16701137_16702920_16703058_16712078_16712194_16712278_16712466_16718126_16718270_16718540_16718636_16719802_16719933_16720359_16720423_16722149_16722322_16723024_16723132_16723314_16723443_16726889_16726948_16727210_16727292_16727485_16727546_16729482_16729543_16731615_16731726_16736950_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
ENSMUSG00000046269.18_0	chrX	-	3410	1	FSM	ENSMUSG00000046269.18	ENSMUST00000115744.2	3240	1	-173	3	-173	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCTGAATTTTATTTGGA	NA	False	NA	NA	False	NA	NA	NA	7242242	7238832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7238800_7242200
ENSMUSG00000046280.10_13	chr3	+	2830	1	Genic_Genomic	ENSMUSG00000046280.10	novel	NA	NA	NA	NA	18118	2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGTCATTTGCTTTGT	NA	False	NA	25	True	AATAAA	-13	NA	89763313	89766143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_+_89763300_89766100
ENSMUSG00000046280.10_2	chr3	+	5728	7	NNC	ENSMUSG00000046280.10	novel	5733	6	NA	NA	-115	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	21.0844861344913	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAAACAGTCATTTGCTT	2764	False	NA	22	True	AATAAA	-10	NA	89738561	89766140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_89739411_89741450_89741578_89756674_89756981_89758915_89759058_89759673_89759794_89761837_89764487_89764605
ENSMUSG00000046280.10_4	chr3	+	5845	6	FSM	ENSMUSG00000046280.10	ENSMUST00000050401.6	5733	6	-113	1	-113	-1	multi-exon	FALSE	canonical	3	46	junction_4	6.34350061086148	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAAACAGTCATTTGCTT	2766	False	NA	22	True	AATAAA	-10	NA	89738563	89766140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89739411_89741450_89741578_89756674_89756981_89758915_89759058_89759673_89759794_89761837
ENSMUSG00000046295.14_1	chr8	+	2063	9	NNC	ENSMUSG00000046295.14	novel	2136	9	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	25.4358875410315	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCTACTTTGTCTCCAT	NA	False	NA	15	True	NA	NA	NA	71858660	71862545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859919_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ENSMUSG00000046295.14_2	chr8	+	2117	9	FSM	ENSMUSG00000046295.14	ENSMUST00000119976.8	2136	9	17	2	3	-2	multi-exon	FALSE	canonical	3	14	junction_4	30.5366071298041	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTACTTTGTCTCCATG	NA	False	NA	16	True	NA	NA	NA	71858670	71862546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859856_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ENSMUSG00000046295.14_21	chr8	+	2012	7	FSM	ENSMUSG00000046295.14	ENSMUST00000125290.8	2410	7	6	392	0	0	multi-exon	FALSE	canonical	3	94	junction_6	8.31998931623246	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCAGAGGACAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	71858665	71862120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71858742_71858830_71858984_71859322_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ENSMUSG00000046295.14_23	chr8	+	1791	7	ISM	ENSMUSG00000046295.14	ENSMUST00000124520.8	1935	8	-3	322	3	-3	5prime_fragment	FALSE	canonical	3	99	junction_2	7.44796765716811	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAGTACCAAATGTGCTG	NA	False	NA	NA	False	NA	NA	NA	71858662	71861798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71860394_71860514_71860687_71861308_71861469_71861565
ENSMUSG00000046295.14_5	chr8	+	2361	8	FSM	ENSMUSG00000046295.14	ENSMUST00000124520.8	1935	8	0	-426	0	-2	multi-exon	FALSE	canonical	3	94	junction_7	7.9256751466744	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTACTTTGTCTCCATG	NA	False	NA	16	True	NA	NA	NA	71858665	71862546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ENSMUSG00000046295.14_6	chr8	+	2624	6	ISM	ENSMUSG00000046295.14	ENSMUST00000125290.8	2410	7	-5	-34	1	-2	intron_retention	TRUE	canonical	3	99	junction_2	7.57891812859857	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTACTTTGTCTCCATG	NA	False	NA	16	True	NA	NA	NA	71858654	71862546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71858742_71858830_71858984_71859322_71860394_71860514_71860687_71861308_71861469_71861565
ENSMUSG00000046311.14_1	chr11	+	3893	4	FSM	ENSMUSG00000046311.14	ENSMUST00000109198.8	3872	4	202	-223	-4	-33	multi-exon	FALSE	canonical	3	79	junction_1	17.4547032821147	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTAAATAGGCTGTGAC	1368	False	NA	-2	True	AATAAA	-7	NA	49094320	49109603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49094366_49103521_49103604_49104416_49104470_49105890
ENSMUSG00000046311.14_20	chr11	+	2679	1	ISM	ENSMUSG00000046311.14	ENSMUST00000109197.8	4029	5	12606	34	1555	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGGCTGTGACTTGTTT	8141	False	NA	4	True	AATAAA	-13	NA	49106930	49109609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_49106900_49109600
ENSMUSG00000046311.14_21	chr11	+	3848	3	ISM	ENSMUSG00000046311.14	ENSMUST00000136539.2	2992	4	8376	-1013	7	-33	3prime_fragment	FALSE	canonical	3	110	junction_2	5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTAAATAGGCTGTGAC	4732	False	NA	-2	True	AATAAA	-7	NA	49103521	49109603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_49103604_49104416_49104470_49105890
ENSMUSG00000046311.14_25	chr11	+	3983	5	FSM	ENSMUSG00000046311.14	ENSMUST00000109197.8	4029	5	6	40	-2	-33	multi-exon	FALSE	canonical	1	1	junction_3	50.6310181608073	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTAAATAGGCTGTGAC	1378	False	NA	-2	True	AATAAA	-7	NA	49094330	49109603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_49094366_49103521_49103604_49104416_49104470_49105381_49105482_49105890
ENSMUSG00000046311.14_3	chr11	+	3887	4	NNC	ENSMUSG00000046311.14	novel	4029	5	NA	NA	-2	-33	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	51.0751080925598	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTAAATAGGCTGTGAC	1378	False	NA	-2	True	AATAAA	-7	NA	49094330	49109603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_49094370_49103521_49103604_49104416_49104470_49105890
ENSMUSG00000046312.5_1	chr4	-	2775	1	ISM	ENSMUSG00000046312.5	ENSMUST00000054920.5	4173	2	4693	5	4285	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGTATTTGTTGTTTTC	9404	False	NA	-7	True	NA	NA	NA	41498383	41495608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_41495600_41498400
ENSMUSG00000046312.5_2	chr4	-	4198	2	FSM	ENSMUSG00000046312.5	ENSMUST00000054920.5	4173	2	-30	5	-30	-5	multi-exon	FALSE	canonical	3	158	junction_1	0	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGTATTTGTTGTTTTC	-22	True	NA	-7	True	NA	NA	NA	41503106	41495608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41499691_41502990
ENSMUSG00000046312.5_5	chr4	-	4239	2	FSM	ENSMUSG00000046312.5	ENSMUST00000149596.2	725	2	371	-3885	371	-5	multi-exon	FALSE	canonical	3	10	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGTATTTGTTGTTTTC	6669	False	NA	-7	True	NA	NA	NA	41502297	41495608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41499691_41502140
ENSMUSG00000046314.17_1	chr12	-	1772	6	FSM	ENSMUSG00000046314.17	ENSMUST00000053768.14	4553	6	341	2440	-50	-2436	multi-exon	FALSE	canonical	0	0	junction_4	7.73563184232549	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTCCATAGATTTATG	NA	False	NA	NA	False	AATATA	-5	NA	45121151	44901706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_44902661_44908007_44908166_44948656_44948823_44949642_44949774_45066249_45066439_45120977
ENSMUSG00000046318.17_0	chr18	-	5712	11	FSM	ENSMUSG00000046318.17	ENSMUST00000130300.3	6572	11	859	1	19	-1	multi-exon	TRUE	canonical	0	0	junction_9	3.55527776692624	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGTGGCTCTCCTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	66424879	66189926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_66194592_66198939_66198976_66199653_66199690_66199799_66199940_66204271_66204393_66209378_66209483_66216165_66216319_66217808_66217944_66227068_66227122_66424202_66424284_66424691
ENSMUSG00000046318.17_2	chr18	-	3855	1	NIC	ENSMUSG00000046318.17	novel	5304	12	NA	NA	15692	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTGGCTCTCCTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	66193782	66189927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_66189900_66193800
ENSMUSG00000046323.9_1	chr6	+	822	4	FSM	ENSMUSG00000046323.9	ENSMUST00000049644.9	833	4	10	1	10	-1	multi-exon	FALSE	canonical	3	943	junction_3	656.420766141826	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCGACTCTTTGTAATTT	690	False	NA	23	True	AATAAA	-13	NA	122603378	122607230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_122603570_122605535_122605769_122606259_122606296_122606868
ENSMUSG00000046324.13_20	chr19	-	1582	1	ISM	ENSMUSG00000046324.13	ENSMUST00000159692.8	7058	15	36638	1982	458	6	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAATGGATCTTTTAC	NA	False	NA	-11	True	AATAAA	-19	NA	29589177	29587595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_29587600_29589200
ENSMUSG00000046324.13_3	chr19	-	5057	15	FSM	ENSMUSG00000046324.13	ENSMUST00000159692.8	7058	15	19	1982	-6	6	multi-exon	FALSE	canonical	3	290	junction_6	30.8387014999672	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAATGGATCTTTTAC	NA	False	NA	-11	True	AATAAA	-19	NA	29625796	29587595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_29590080_29590168_29590333_29593122_29593239_29593916_29594120_29595217_29595371_29600468_29600660_29601040_29601216_29604246_29604468_29606003_29606217_29608742_29608836_29609790_29609938_29614690_29614797_29617256_29617385_29623366_29623669_29625435
ENSMUSG00000046329.15_0	chr17	-	3339	10	FSM	ENSMUSG00000046329.15	ENSMUST00000040280.14	3362	10	18	5	18	-5	multi-exon	FALSE	canonical	3	34	junction_6	5.45916377623922	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTTGATTTTTAAT	NA	False	NA	-12	True	AATAAA	-11	NA	57366845	57350715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57352664_57354185_57354337_57359681_57359850_57360240_57360349_57360546_57360700_57360783_57360943_57362273_57362386_57363581_57363670_57365107_57365235_57366520
ENSMUSG00000046329.15_11	chr17	-	1403	8	ISM	ENSMUSG00000046329.15	ENSMUST00000040280.14	3362	10	23	8803	-21	3722	5prime_fragment	FALSE	canonical	3	34	junction_4	5.8970764115858	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTCAGTGTTGCAAAAG	NA	False	NA	0	True	NA	NA	NA	57366840	57359513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_57359850_57360240_57360349_57360546_57360700_57360783_57360943_57362273_57362386_57363581_57363670_57365107_57365235_57366520
ENSMUSG00000046329.15_13	chr17	-	228	1	ISM	ENSMUSG00000046329.15	ENSMUST00000165187.2	2298	2	2514	842	-1920	-842	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCCCAGCACTGGGGAGG	NA	False	NA	NA	False	AATAAA	-32	NA	57364305	57364077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_57364100_57364300
ENSMUSG00000046329.15_2	chr17	-	1556	1	ISM	ENSMUSG00000046329.15	ENSMUST00000040280.14	3362	10	14596	1	7557	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTGATTTTTAATTGTT	NA	False	NA	-8	True	AATAAA	-15	NA	57352267	57350711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_57350700_57352300
ENSMUSG00000046329.15_3	chr17	-	2875	8	ISM	ENSMUSG00000046329.15	ENSMUST00000040280.14	3362	10	3207	4	-1271	-4	3prime_fragment	FALSE	canonical	3	34	junction_6	5.14682386704338	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTGTTGATTTTTAATT	NA	False	NA	-11	True	AATAAA	-12	NA	57363656	57350714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_57352664_57354185_57354337_57359681_57359850_57360240_57360349_57360546_57360700_57360783_57360943_57362273_57362386_57363581
ENSMUSG00000046329.15_8	chr17	-	1561	9	ISM	ENSMUSG00000046329.15	ENSMUST00000040280.14	3362	10	28	3295	-16	45	5prime_fragment	FALSE	canonical	3	34	junction_5	5.53257399408268	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCGGCCTGAGAGTTCAGT	NA	False	NA	NA	False	NA	NA	NA	57366835	57354005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_57354337_57359681_57359850_57360240_57360349_57360546_57360700_57360783_57360943_57362273_57362386_57363581_57363670_57365107_57365235_57366520
ENSMUSG00000046330.11_0	chr1	+	362	4	FSM	ENSMUSG00000046330.11	ENSMUST00000059980.11	558	4	0	196	0	0	multi-exon	FALSE	canonical	2	9164	junction_1	3956.18005993998	2148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTTTTTTTTTTGCCTT	NA	False	NA	-2	True	AATAAA	-15	NA	72750448	72752776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_72750483_72750830_72750960_72751300_72751384_72752660
ENSMUSG00000046330.11_2	chr1	+	285	3	FSM	ENSMUSG00000046330.11	ENSMUST00000212432.2	665	3	400	-20	-44	-1	multi-exon	FALSE	canonical	2	15690	junction_1	1470.5	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTTTTTTTTTTTTGCCT	NA	False	NA	-3	True	AATAAA	-14	NA	72750872	72752775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_72750960_72751300_72751384_72752660
ENSMUSG00000046337.18_18	chr1	-	1726	11	NNC	ENSMUSG00000046337.18	novel	1659	10	NA	NA	56	0	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_8	39.9335698379196	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACGCC	NA	False	NA	NA	False	AATACA	-27	NA	36722208	36639056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
ENSMUSG00000046337.18_2	chr1	-	2347	16	NNC	ENSMUSG00000046337.18	novel	2286	15	NA	NA	52	-6	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_5	46.2106288879758	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCCATGGTTCTGGAGT	NA	False	NA	-7	True	ATTAAA	-12	NA	36722212	36601782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
ENSMUSG00000046337.18_20	chr1	-	1611	10	FSM	ENSMUSG00000046337.18	ENSMUST00000114981.3	1659	10	48	0	48	0	multi-exon	FALSE	canonical	3	94	junction_7	27.7328525599353	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACGCC	NA	False	NA	NA	False	AATACA	-27	NA	36722216	36639056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
ENSMUSG00000046337.18_3	chr1	-	2220	15	FSM	ENSMUSG00000046337.18	ENSMUST00000170295.8	2286	15	56	10	56	-6	multi-exon	FALSE	canonical	3	61	junction_5	44.2795502622663	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCCATGGTTCTGGAGT	NA	False	NA	-7	True	ATTAAA	-12	NA	36722208	36601782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
ENSMUSG00000046338.5_11	chr2	+	4945	19	NIC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-16	-2	intron_retention	FALSE	canonical	3	16	junction_1	53.2354715589029	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTGAAGTACATGTCCA	4985	False	NA	12	True	AATAAA	-23	NA	127267102	127278010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ENSMUSG00000046338.5_16	chr2	+	2639	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-16	-2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	60.6148017815066	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTGAAGTACATGTCCA	4985	False	NA	12	True	AATAAA	-23	NA	127267102	127278010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274894_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ENSMUSG00000046338.5_2	chr2	+	2629	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-16	-3	at_least_one_novel_splicesite	TRUE	canonical	3	44	junction_1	48.8950470250594	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCTGAAGTACATGTCC	4985	False	NA	11	True	AATAAA	-22	NA	127267102	127278009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_127267142_127269172_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ENSMUSG00000046338.5_3	chr2	+	2642	22	FSM	ENSMUSG00000046338.5	ENSMUST00000062211.4	2628	22	-16	2	-16	-2	multi-exon	FALSE	canonical	3	16	junction_1	53.4925768898164	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTGAAGTACATGTCCA	4985	False	NA	12	True	AATAAA	-23	NA	127267102	127278010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ENSMUSG00000046338.5_6	chr2	+	2645	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-16	-2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	61.0786266991636	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTGAAGTACATGTCCA	4985	False	NA	12	True	AATAAA	-23	NA	127267102	127278010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273199_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ENSMUSG00000046338.5_72	chr2	+	2602	21	ISM	ENSMUSG00000046338.5	ENSMUST00000062211.4	2628	22	2043	2	2043	-2	3prime_fragment	FALSE	canonical	3	126	junction_6	33.3485756817289	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTGAAGTACATGTCCA	7044	False	NA	12	True	AATAAA	-23	NA	127269161	127278010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ENSMUSG00000046351.12_1	chr13	-	4890	4	FSM	ENSMUSG00000046351.12	ENSMUST00000152557.8	986	4	21	-3925	21	-3	multi-exon	FALSE	canonical	3	23	junction_3	48.1940521918075	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTTTGTCTCCACTATA	9235	False	NA	-3	True	AATAAA	-19	NA	23553149	23537275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23541884_23546972_23547046_23552289_23552376_23553026
ENSMUSG00000046351.12_2	chr13	-	4886	5	FSM	ENSMUSG00000046351.12	ENSMUST00000125328.2	815	5	7	-4078	7	-12	multi-exon	FALSE	canonical	3	71	junction_1	23.1124966197942	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATACTCCATTTTTGTC	9027	False	NA	-12	True	AATAAA	-10	NA	23553357	23537284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553304
ENSMUSG00000046351.12_3	chr13	-	2601	4	FSM	ENSMUSG00000046351.12	ENSMUST00000050101.9	4844	4	15	2228	1	1700	multi-exon	FALSE	canonical	3	31	junction_1	41.5772373621272	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGGGTGTGGTTTATTGT	9021	False	NA	1	True	AATAAA	-26	NA	23553363	23539500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23541884_23546972_23547046_23552289_23552376_23553304
ENSMUSG00000046351.12_4	chr13	-	3438	1	ISM	ENSMUSG00000046351.12	ENSMUST00000050101.9	4844	4	12658	10	6660	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACTCCATTTTTGTCTC	2672	False	NA	-10	True	AATAAA	-12	NA	23540720	23537282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_23537300_23540700
ENSMUSG00000046351.12_5	chr13	-	4845	4	ISM	ENSMUSG00000046351.12	ENSMUST00000145451.8	1261	5	994	-3927	4	-2	3prime_fragment	FALSE	canonical	3	71	junction_1	26.0426999794995	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTGTCTCCACTATAC	10007	False	NA	-2	True	AATAAA	-20	NA	23552377	23537274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289
ENSMUSG00000046351.12_9	chr13	-	4973	5	FSM	ENSMUSG00000046351.12	ENSMUST00000145451.8	1261	5	207	-3919	6	-10	multi-exon	FALSE	canonical	3	23	junction_4	37.5499667110372	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACTCCATTTTTGTCTC	9220	False	NA	-10	True	AATAAA	-12	NA	23553164	23537282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553026
ENSMUSG00000046352.8_0	chr14	-	2372	2	FSM	ENSMUSG00000046352.8	ENSMUST00000055698.8	2406	2	9	25	9	-25	multi-exon	FALSE	canonical	3	13	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAGAATACCAAACTCTAA	NA	False	NA	NA	False	ATTAAA	-42	NA	57342150	57336081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_57338229_57341925
ENSMUSG00000046352.8_1	chr14	-	502	1	ISM	ENSMUSG00000046352.8	ENSMUST00000055698.8	2406	2	5481	120	5481	-120	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATGCTTGTCACTGATA	NA	False	NA	NA	False	AATAAA	-13	NA	57336678	57336176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_57336200_57336700
ENSMUSG00000046364.15_0	chr7	+	509	5	FSM	ENSMUSG00000046364.15	ENSMUST00000143107.2	1158	5	49	600	0	1	multi-exon	FALSE	canonical	3	7451	junction_1	3855.66202972978	1538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTCTTTGCATCCTTC	NA	False	NA	3	True	ATTAAA	-15	NA	109118402	109120974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_109118430_109118791_109118856_109119124_109119201_109119674_109119850_109120807
ENSMUSG00000046364.15_13	chr7	+	482	4	ISM	ENSMUSG00000046364.15	ENSMUST00000143107.2	1158	5	437	601	314	0	3prime_fragment	FALSE	canonical	3	12965	junction_3	1855.24883027108	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118790	109120973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_109118856_109119124_109119201_109119674_109119850_109120807
ENSMUSG00000046367.11_1	chr1	-	4382	2	FSM	ENSMUSG00000046367.11	ENSMUST00000052911.8	1360	2	-145	-2877	-145	2873	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGGTCGTGGTAATTTG	NA	False	NA	NA	False	NA	NA	NA	134474905	134465805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_134469904_134474621
ENSMUSG00000046380.4_0	chr15	-	3348	2	FSM	ENSMUSG00000046380.4	ENSMUST00000050234.4	5853	2	243	2262	243	-2262	multi-exon	FALSE	canonical	3	23	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCTTTGTCATGATTC	NA	False	NA	-2	True	NA	NA	NA	74581141	74576411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_74579714_74581095
ENSMUSG00000046380.4_1	chr15	-	3304	1	NIC	ENSMUSG00000046380.4	novel	5853	2	NA	NA	1669	-2262	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCTTTGTCATGATTC	NA	False	NA	-2	True	NA	NA	NA	74579715	74576411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_74576400_74579700
ENSMUSG00000046402.11_0	chr9	+	715	4	FSM	ENSMUSG00000046402.11	ENSMUST00000052068.11	2652	4	1910	27	1910	-27	multi-exon	FALSE	canonical	3	98	junction_1	8.01387685344754	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGTGTTTTGGAGG	4795	False	NA	14	True	AATAAA	-15	NA	98306923	98328601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_98307105_98307505_98307685_98326642_98326745_98328348
ENSMUSG00000046402.11_1	chr9	+	339	2	ISM	ENSMUSG00000046402.11	ENSMUST00000052068.11	2652	4	21638	34	21638	-34	3prime_fragment	FALSE	canonical	3	115	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTTTAAAGACATGTGTT	NA	False	NA	7	True	AATAAA	-8	NA	98326651	98328594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_98326745_98328348
ENSMUSG00000046404.6_0	chr1	+	4630	2	FSM	ENSMUSG00000046404.6	ENSMUST00000049813.6	6128	2	-1211	2709	-1211	-2709	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACTGGTATCTTAAAAAT	NA	False	NA	NA	False	AGTAAA	-18	NA	130643852	130649386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_130645549_130646452
ENSMUSG00000046404.6_1	chr1	+	579	1	ISM	ENSMUSG00000046404.6	ENSMUST00000049813.6	6128	2	6452	1	6452	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCGAGCATATTTTG	NA	False	NA	20	True	AATAAA	-15	NA	130651515	130652094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_130651500_130652100
ENSMUSG00000046408.16_1	chr8	+	2777	2	NIC	ENSMUSG00000046408.16	novel	1291	6	NA	NA	-30	-4	intron_retention	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGTTCTGTGTCTTGTGA	5114	False	NA	NA	False	AATAAA	-12	NA	84728175	84731395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_84730111_84730553
ENSMUSG00000046408.16_2	chr8	+	1407	6	FSM	ENSMUSG00000046408.16	ENSMUST00000060357.15	1291	6	-142	26	-142	-26	multi-exon	FALSE	canonical	2	3	junction_3	1.32664991614216	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTTAATAAAATAGCAAGG	4927	False	NA	NA	False	NA	NA	NA	84727988	84731373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84728535_84729486_84729632_84729744_84729846_84729924_84730111_84730553_84730689_84731079
ENSMUSG00000046410.11_0	chr7	-	4151	3	FSM	ENSMUSG00000046410.11	ENSMUST00000085818.6	4084	3	-70	3	-70	-3	multi-exon	FALSE	canonical	1	1	junction_2	2	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTACTACCTTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	28932010	28921353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28924685_28924896_28925293_28931586
ENSMUSG00000046410.11_1	chr7	-	620	1	ISM	ENSMUSG00000046410.11	ENSMUST00000085818.6	4084	3	9967	3	8759	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTACTACCTTGTGTTTT	3443	False	NA	NA	False	NA	NA	NA	28921973	28921353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_28921400_28922000
ENSMUSG00000046417.15_0	chr11	-	2029	4	FSM	ENSMUSG00000046417.15	ENSMUST00000057194.9	1984	4	-49	4	-49	-4	multi-exon	FALSE	canonical	3	119	junction_3	14.7044966667419	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATACGGACTGTGCTTTA	5421	False	NA	-6	True	AATACA	-13	NA	62539398	62495713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_62497073_62500028_62500142_62511259_62511389_62538970
ENSMUSG00000046432.13_0	chrX	+	770	3	FSM	ENSMUSG00000046432.13	ENSMUST00000113112.2	826	3	9	47	9	-3	multi-exon	FALSE	canonical	3	533	junction_2	2270	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTATTGTGTCCTTAAAG	NA	False	NA	NA	False	AATAAA	-13	NA	135171062	135172666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_135171151_135171558_135171632_135172057
ENSMUSG00000046432.13_1	chrX	+	813	3	FSM	ENSMUSG00000046432.13	ENSMUST00000053540.11	930	3	53	64	9	-6	multi-exon	FALSE	canonical	3	4289	junction_2	392	1153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCATTATTGTGTCCTTA	NA	False	NA	NA	False	AATAAA	-10	NA	135171062	135172663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_135171151_135171558_135171632_135172011
ENSMUSG00000046432.13_2	chrX	+	808	3	FSM	ENSMUSG00000046432.13	ENSMUST00000178632.8	933	3	61	64	9	-6	multi-exon	FALSE	canonical	3	238	junction_2	2417.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCATTATTGTGTCCTTA	NA	False	NA	NA	False	AATAAA	-10	NA	135171062	135172663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_135171151_135171558_135171632_135172016
ENSMUSG00000046434.17_22	chr15	+	1916	11	FSM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	1	1	1	-1	multi-exon	FALSE	canonical	3	2223	junction_7	4396.07925429012	2857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGGAATGACAACTGTAT	NA	False	NA	-2	True	AATAAA	-16	NA	103148859	103153381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
ENSMUSG00000046434.17_25	chr15	+	1280	11	FSM	ENSMUSG00000046434.17	ENSMUST00000230171.2	1283	11	1	2	1	-2	multi-exon	FALSE	canonical	3	551	junction_9	4985.84843431888	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCCTGTTTCTTGTCTTC	NA	False	NA	11	True	AATAAA	-11	NA	103148859	103155117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103154772_103154849_103154971
ENSMUSG00000046434.17_6	chr15	+	1757	10	FSM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	-21	1	1	-1	multi-exon	FALSE	canonical	3	9291	junction_7	1545.88284736515	9857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGGAATGACAACTGTAT	NA	False	NA	-2	True	AATAAA	-16	NA	103148859	103153381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
ENSMUSG00000046441.6_0	chr8	+	3359	2	FSM	ENSMUSG00000046441.6	ENSMUST00000056972.6	3545	2	-6	192	-6	-192	multi-exon	TRUE	canonical	3	60	junction_1	0	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGGTGTTAATTTGTCA	3634	False	NA	8	True	AATAAA	-15	NA	110944614	110950926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_110944719_110947671
ENSMUSG00000046441.6_2	chr8	+	2410	1	ISM	ENSMUSG00000046441.6	ENSMUST00000056972.6	3545	2	3896	192	3896	-192	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGGTGTTAATTTGTCA	7536	False	NA	8	True	AATAAA	-15	NA	110948516	110950926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_110948500_110950900
ENSMUSG00000046442.5_1	chr11	-	6315	7	FSM	ENSMUSG00000046442.5	ENSMUST00000055438.5	6344	7	25	4	25	-4	multi-exon	FALSE	canonical	0	0	junction_6	1.69967317119759	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAACCACCGGTTAT	NA	False	NA	NA	False	AATAAA	-8	NA	87249824	87117735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_87122755_87127955_87128050_87128257_87128402_87131428_87131618_87135094_87135295_87139757_87139877_87249274
ENSMUSG00000046447.4_0	chr4	+	1458	2	FSM	ENSMUSG00000046447.4	ENSMUST00000050918.4	4444	2	4	2982	4	-2982	multi-exon	FALSE	canonical	3	239	junction_1	0	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAGAAAAAAGTCTCAG	5748	False	NA	NA	False	NA	NA	NA	138181628	138184452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_138182663_138184028
ENSMUSG00000046447.4_1	chr4	+	1344	1	ISM	ENSMUSG00000046447.4	ENSMUST00000050918.4	4444	2	2486	1980	2486	-1980	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTTTCGTTAGCCTTGTT	8230	False	NA	18	True	AATAAA	-18	NA	138184110	138185454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_138184100_138185500
ENSMUSG00000046449.16_0	chrX	-	5090	6	NNC	ENSMUSG00000046449.16	novel	10891	5	NA	NA	-395	2759	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	11.6275534829989	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGTATAATGTGTTTTTA	NA	False	NA	NA	False	AATAAA	-12	NA	103245186	103124560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_103124709_103126759_103126890_103127461_103131837_103132486_103132613_103244238_103244478_103245114
ENSMUSG00000046449.16_1	chrX	-	5231	6	NNC	ENSMUSG00000046449.16	novel	10891	5	NA	NA	89	2759	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	9.86711710683521	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGTATAATGTGTTTTTA	NA	False	NA	NA	False	AATAAA	-12	NA	103244634	103124560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_103124709_103126759_103126890_103127461_103131837_103132486_103132613_103143231_103143288_103244238
ENSMUSG00000046449.16_12	chrX	-	7914	4	FSM	ENSMUSG00000046449.16	ENSMUST00000056502.7	5211	4	30	-2733	3	2733	multi-exon	FALSE	canonical	1	4	junction_3	9.03081145609604	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAGAAGAAATAAAGAAAA	NA	False	NA	NA	False	AAAAAG	-8	NA	103244720	103124586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_103131837_103132486_103132613_103143231_103143288_103244238
ENSMUSG00000046449.16_2	chrX	-	2262	1	ISM	ENSMUSG00000046449.16	ENSMUST00000118314.8	11476	3	117969	3521	117901	2759	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGTATAATGTGTTTTTA	NA	False	NA	NA	False	AATAAA	-12	NA	103126822	103124560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_103124600_103126800
ENSMUSG00000046449.16_4	chrX	-	5121	7	NNC	ENSMUSG00000046449.16	novel	10891	5	NA	NA	-367	2762	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	10.5619863451699	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATAATGTGTTTTTATAA	NA	False	NA	NA	False	AATAAA	-15	NA	103245158	103124557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_103124709_103126759_103126890_103127461_103131837_103132486_103132613_103143231_103143288_103244238_103244478_103245114
ENSMUSG00000046449.16_5	chrX	-	5262	5	NNC	ENSMUSG00000046449.16	novel	10891	5	NA	NA	9	2739	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	10.779030568655	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATAAAGAAAATGTTCT	NA	False	NA	NA	False	ATTAAA	-3	NA	103244741	103124580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_103124709_103126759_103126890_103127461_103131837_103132486_103132613_103244238
ENSMUSG00000046463.6_0	chr10	+	1669	3	NNC	ENSMUSG00000046463.6	novel	1791	3	NA	NA	1384	661	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	8.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGATAATTTATAATAAT	NA	False	NA	NA	False	AATAAA	-8	NA	37018468	37027972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_37018518_37024872_37025003_37026482
ENSMUSG00000046463.6_1	chr10	+	1630	3	FSM	ENSMUSG00000046463.6	ENSMUST00000217338.2	337	3	-32	-1261	-32	542	multi-exon	FALSE	canonical	3	7	junction_1	7.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAACAATGTGTGAATAAT	NA	False	NA	NA	False	ATTAAA	-10	NA	37017052	37027853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_37017182_37024872_37025003_37026482
ENSMUSG00000046470.6_0	chr2	-	1445	2	FSM	ENSMUSG00000046470.6	ENSMUST00000054491.6	1620	2	166	9	166	-9	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGGTTTCAGTGATCAC	1046	False	NA	NA	False	ATTAAA	-12	NA	181313267	181311637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181312790_181312974
ENSMUSG00000046500.9_4	chr6	-	2221	6	FSM	ENSMUSG00000046500.9	ENSMUST00000089295.6	2190	6	-39	8	-39	-8	multi-exon	FALSE	canonical	1	3	junction_3	2.56124969497314	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATAAGATCTTGTGATT	NA	False	NA	-36	True	AGTAAA	-18	NA	97037413	96808171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_96809534_96820711_96820837_96840720_96840877_96991332_96991449_96996875_96997016_97037091
ENSMUSG00000046516.11_0	chr16	+	382	3	FSM	ENSMUSG00000046516.11	ENSMUST00000050273.9	444	3	36	26	5	-4	multi-exon	FALSE	canonical	3	2901	junction_2	455	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGAAGGAAAGAAAATATGC	NA	False	NA	2	True	ATTAAA	-4	NA	38167388	38173099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_38167570_38169602_38169692_38172987
ENSMUSG00000046519.16_2	chr3	+	2799	5	FSM	ENSMUSG00000046519.16	ENSMUST00000177390.8	2836	5	35	2	0	0	multi-exon	FALSE	canonical	3	50	junction_3	6.87386354243376	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTGTTCTCTCTGTAC	NA	False	NA	2	True	AATAAA	-13	NA	95496279	95526551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95496446_95499027_95499217_95515216_95515349_95516982_95517098_95524354
ENSMUSG00000046519.16_5	chr3	+	1719	1	ISM	ENSMUSG00000046519.16	ENSMUST00000177390.8	2836	5	28588	2	28532	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTGTTCTCTCTGTAC	NA	False	NA	2	True	AATAAA	-13	NA	95524832	95526551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95524800_95526600
ENSMUSG00000046541.10_0	chr7	+	6091	3	FSM	ENSMUSG00000046541.10_ENSMUSG00000090330.3	ENSMUST00000055604.6	3380	3	39	-2750	39	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAATGTTGACTGCCTCC	2050	False	NA	1	True	TATAAA	-11	NA	24920888	24929682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24920930_24923539_24923633_24923725
ENSMUSG00000046546.4_1	chr16	+	2999	1	FSM	ENSMUSG00000046546.4	ENSMUST00000059078.4	3075	1	3	73	3	-73	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCCTTGTTTCAGTTCT	NA	False	NA	19	True	TATAAA	-20	NA	30418543	30421542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_30418500_30421500
ENSMUSG00000046550.9_0	chrX	+	1342	2	FSM	ENSMUSG00000046550.9	ENSMUST00000049999.9	1309	2	-35	2	17	-2	multi-exon	FALSE	canonical	3	21	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAGTCATCTAAAAAATT	NA	False	NA	NA	False	AATAAA	-17	NA	152615253	152617237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_152615545_152616186
ENSMUSG00000046550.9_1	chrX	+	1232	3	FSM	ENSMUSG00000046550.9	ENSMUST00000123264.2	536	3	11	-707	11	-13	multi-exon	FALSE	canonical	3	17	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATTATTATAATTAGTCA	NA	False	NA	NA	False	AATAAA	-6	NA	152615247	152617226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_152615326_152615430_152615545_152616186
ENSMUSG00000046556.8_0	chr8	-	4372	2	FSM	ENSMUSG00000046556.8	ENSMUST00000057717.8	7232	2	-266	3126	-266	-3126	multi-exon	FALSE	canonical	3	26	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCACAGCTCTTCCACTC	NA	False	NA	-7	True	AGTAAA	-16	NA	96058844	96052764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_96056441_96058148
ENSMUSG00000046556.8_1	chr8	-	1593	1	ISM	ENSMUSG00000046556.8	ENSMUST00000057717.8	7232	2	4220	3127	4220	-3127	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCCACAGCTCTTCCACT	NA	False	NA	-8	True	AGTAAA	-15	NA	96054358	96052765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_96052800_96054400
ENSMUSG00000046562.6_0	chr5	-	3595	5	FSM	ENSMUSG00000046562.6	ENSMUST00000060798.6	3659	5	48	16	-2	-16	multi-exon	FALSE	canonical	3	283	junction_1	7.58287544405155	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGTTCACTCTGACTTG	NA	False	NA	-6	True	AATAAA	-11	NA	115272986	115260624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115263560_115265069_115265243_115265360_115265473_115268525_115268640_115272725
ENSMUSG00000046562.6_1	chr5	-	1927	1	ISM	ENSMUSG00000046562.6	ENSMUST00000060798.6	3659	5	10483	16	3021	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGTTCACTCTGACTTG	9953	False	NA	-6	True	AATAAA	-11	NA	115262551	115260624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_115260600_115262600
ENSMUSG00000046567.11_0	chr10	-	2333	7	FSM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	160	71	0	-71	multi-exon	FALSE	canonical	3	50	junction_5	5.07991688470939	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTCTGTTTGTCTGATT	NA	False	NA	-2	True	AATAAA	-13	NA	100425097	100408197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_100409623_100411578_100411749_100413022_100413221_100414176_100414294_100419775_100419872_100422052_100422171_100424888
ENSMUSG00000046567.11_12	chr10	-	6519	4	NIC	ENSMUSG00000046567.11	novel	562	5	NA	NA	1	-70	intron_retention	FALSE	canonical	3	50	junction_2	5.18544972870135	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTCTGTTTGTCTGATTT	NA	False	NA	-1	True	AATAAA	-14	NA	100425096	100408196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_100414294_100419775_100419872_100422052_100422171_100424888
ENSMUSG00000046567.11_2	chr10	-	4226	6	NIC	ENSMUSG00000046567.11	novel	2564	7	NA	NA	-6	-70	intron_retention	FALSE	canonical	3	50	junction_4	5.23832034148352	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTCTGTTTGTCTGATTT	NA	False	NA	-1	True	AATAAA	-14	NA	100425033	100408196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_100411749_100413022_100413221_100414176_100414294_100419775_100419872_100422052_100422171_100424888
ENSMUSG00000046567.11_7	chr10	-	1804	3	ISM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	12088	9	9336	-9	3prime_fragment	FALSE	canonical	3	55	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAATAAGTGTGAAATAA	NA	False	NA	60	True	AATAAA	-16	NA	100413169	100408135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_100409623_100411578_100411749_100413022
ENSMUSG00000046567.11_8	chr10	-	2392	8	NIC	ENSMUSG00000046567.11	novel	2564	7	NA	NA	1	-71	combination_of_known_junctions	FALSE	canonical	2	5	junction_4	24.5614597718142	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTCTGTTTGTCTGATT	NA	False	NA	-2	True	AATAAA	-13	NA	100425096	100408197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_100409623_100411578_100411749_100413022_100413221_100414176_100414294_100418124_100418185_100419775_100419872_100422052_100422171_100424888
ENSMUSG00000046572.11_0	chr5	-	6744	3	FSM	ENSMUSG00000046572.11	ENSMUST00000179555.8	6816	3	67	5	-2	-3	multi-exon	FALSE	canonical	3	222	junction_2	31	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTACTGCTCTCTCATT	NA	False	NA	-8	True	AATAAA	-13	NA	38842102	38825831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_38832197_38839827_38840126_38842021
ENSMUSG00000046572.11_1	chr5	-	3488	1	ISM	ENSMUSG00000046572.11	ENSMUST00000179555.8	6816	3	12851	4	12775	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTACTGCTCTCTCATTT	NA	False	NA	-7	True	AATAAA	-14	NA	38829318	38825830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_38825800_38829300
ENSMUSG00000046572.11_2	chr5	-	6809	4	FSM	ENSMUSG00000046572.11	ENSMUST00000057258.11	6804	4	-7	2	0	-2	multi-exon	FALSE	canonical	3	45	junction_3	106.871677986057	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTACTGCTCTCTCATTT	NA	False	NA	-7	True	AATAAA	-14	NA	38842100	38825830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_38832197_38839827_38840126_38840535_38840602_38842021
ENSMUSG00000046572.11_7	chr5	-	6565	3	FSM	ENSMUSG00000046572.11	ENSMUST00000178760.2	425	3	-2	-6138	-2	-3	multi-exon	FALSE	canonical	3	25	junction_1	98.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTACTGCTCTCTCATT	NA	False	NA	-8	True	AATAAA	-13	NA	38842102	38825831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_38832018_38839827_38840126_38842021
ENSMUSG00000046573.8_1	chr13	-	1038	3	FSM	ENSMUSG00000046573.8	ENSMUST00000053265.8	2086	3	-21	1069	-21	-1069	multi-exon	FALSE	canonical	3	325	junction_1	9.5	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAATGTGCATTTATTTC	NA	False	NA	NA	False	AATAAA	-9	NA	36301530	36163446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_36163891_36276788_36276910_36301057
ENSMUSG00000046574.9_0	chr7	-	754	1	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	24423	142	5936	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTGGAGTGCTCTGT	NA	False	NA	-3	True	NA	NA	NA	44677882	44677128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44677100_44677900
ENSMUSG00000046574.9_1	chr7	-	3838	11	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	5238	339	5238	-339	3prime_fragment	FALSE	canonical	3	21	junction_9	9.28224110869784	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTCGGCCCTGCTCCTCT	NA	False	NA	NA	False	NA	NA	NA	44697067	44677325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44678049_44678182_44678279_44678361_44678509_44680034_44680133_44680424_44680551_44683168_44683657_44684032_44684167_44684302_44684420_44692775_44693213_44695146_44695814_44696262
ENSMUSG00000046574.9_11	chr7	-	1036	4	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	-451	22342	-451	-21650	5prime_fragment	FALSE	canonical	3	13	junction_3	4.10960933531265	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTACAGTGCCCTCGTC	NA	False	NA	NA	False	NA	NA	NA	44702756	44699328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44699553_44699628_44699791_44700641_44700755_44702219
ENSMUSG00000046574.9_2	chr7	-	1653	6	FSM	ENSMUSG00000046574.9	ENSMUST00000210410.2	1487	6	376	-542	376	-150	multi-exon	FALSE	canonical	3	41	junction_4	2.4	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTACCAGCAGGCTGGAG	NA	False	NA	-11	True	NA	NA	NA	44683442	44677136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44678049_44678182_44678279_44678361_44678509_44680034_44680133_44680424_44680551_44683168
ENSMUSG00000046574.9_3	chr7	-	2803	10	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	6908	153	6908	-153	3prime_fragment	FALSE	canonical	3	21	junction_9	9.01849950564579	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTTTACCAGCAGGCTG	NA	False	NA	-14	True	NA	NA	NA	44695397	44677139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44678049_44678182_44678279_44678361_44678509_44680034_44680133_44680424_44680551_44683168_44683657_44684032_44684167_44684302_44684420_44692775_44693213_44695146
ENSMUSG00000046574.9_4	chr7	-	2030	8	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	17974	150	-513	-150	3prime_fragment	FALSE	canonical	3	29	junction_7	5.68205194324324	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTACCAGCAGGCTGGAG	NA	False	NA	-11	True	NA	NA	NA	44684331	44677136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44678049_44678182_44678279_44678361_44678509_44680034_44680133_44680424_44680551_44683168_44683657_44684032_44684167_44684302
ENSMUSG00000046574.9_8	chr7	-	1891	9	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	9446	461	-9041	231	3prime_fragment	FALSE	canonical	3	23	junction_8	7.73688406272189	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTTTTAATCTTATTT	NA	False	NA	NA	False	NA	NA	NA	44692859	44677447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44678049_44678182_44678279_44678361_44678509_44680034_44680133_44680424_44680551_44683168_44683657_44684032_44684167_44684302_44684420_44692775
ENSMUSG00000046589.8_0	chr8	+	3775	3	FSM	ENSMUSG00000046589.8	ENSMUST00000053035.7	3878	3	102	1	102	-1	multi-exon	FALSE	canonical	1	1	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCCTTGTACAGTATGAT	NA	False	NA	NA	False	AATAAA	-18	NA	4276928	4287469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4277006_4281661_4281805_4283914
ENSMUSG00000046591.11_0	chr7	+	7153	22	FSM	ENSMUSG00000046591.11	ENSMUST00000035977.9	7199	22	32	14	-3	0	multi-exon	FALSE	canonical	3	202	junction_6	27.6640028223357	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTCTAAAAATGCTTA	1956	False	NA	2	True	ATTAAA	-12	NA	79309975	79347882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019_79325157_79326974_79327194_79328762_79328915_79330655_79330757_79331557_79331652_79331737_79331818_79331996_79332225_79332703_79332801_79333951_79334010_79335524_79335687_79337973_79338065_79339655_79339715_79340619_79340752_79341569_79341728_79343448_79345571_79345682_79345809_79346401
ENSMUSG00000046591.11_1	chr7	+	2002	7	NIC	ENSMUSG00000046591.11	novel	3655	20	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	91.3699744020005	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGGAAACTAAAGGCAAA	1951	False	NA	NA	False	AATAAA	-17	NA	79309970	79325461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019_79325157_79325257
ENSMUSG00000046591.11_47	chr7	+	2707	3	ISM	ENSMUSG00000046591.11	ENSMUST00000035977.9	7199	22	34527	14	23802	0	3prime_fragment	FALSE	canonical	3	279	junction_1	11.5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTCTAAAAATGCTTA	NA	False	NA	2	True	ATTAAA	-12	NA	79344470	79347882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79345571_79345682_79345809_79346401
ENSMUSG00000046591.11_6	chr7	+	2094	6	ISM	ENSMUSG00000046591.11	ENSMUST00000206591.2	3655	20	-15	18220	1	0	5prime_fragment	FALSE	canonical	3	244	junction_2	18.3847763108502	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGGAAACTAAAGGCAAA	1960	False	NA	NA	False	AATAAA	-17	NA	79309979	79325461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019
ENSMUSG00000046598.16_1	chr16	+	1656	7	FSM	ENSMUSG00000046598.16	ENSMUST00000115227.10	3122	7	63	1403	19	1	multi-exon	FALSE	canonical	3	475	junction_4	18.4812217008388	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTGTGTGCATGAAAG	NA	False	NA	26	True	AGTAAA	-16	NA	31247628	31276316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_31247806_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
ENSMUSG00000046598.16_17	chr16	+	1824	1	ISM	ENSMUSG00000046598.16	ENSMUST00000115227.10	3122	7	28324	6	-1044	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACACTCGCAGAGTGGCT	480	False	NA	11	True	AATAAA	-11	NA	31275889	31277713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_31275900_31277700
ENSMUSG00000046603.17_0	chr9	+	3028	11	FSM	ENSMUSG00000046603.17	ENSMUST00000052740.14	3049	11	15	6	-7	1	multi-exon	FALSE	canonical	3	16	junction_4	5.03984126734166	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACAGCTGCGTTCCAGGA	NA	False	NA	16	True	AATAAA	-16	NA	122634618	122665393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_122634754_122637831_122637902_122640822_122640959_122643496_122643654_122647838_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
ENSMUSG00000046603.17_1	chr9	+	3039	11	NIC	ENSMUSG00000046603.17	novel	2909	11	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	9.76933979345585	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACACAGCTGCGTTCCAG	NA	False	NA	14	True	AATAAA	-14	NA	122634606	122665391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_122634754_122637831_122637902_122640745_122640959_122643496_122643654_122647914_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
ENSMUSG00000046603.17_13	chr9	+	2275	6	ISM	ENSMUSG00000046603.17	ENSMUST00000136274.3	2909	11	18867	1	18860	-1	3prime_fragment	FALSE	canonical	3	27	junction_4	2.57681974534502	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACACAGCTGCGTTCCAG	NA	False	NA	14	True	AATAAA	-14	NA	122653527	122665391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
ENSMUSG00000046603.17_3	chr9	+	2955	11	FSM	ENSMUSG00000046603.17	ENSMUST00000136274.3	2909	11	-47	1	10	-1	multi-exon	FALSE	canonical	3	16	junction_4	5.03984126734166	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACACAGCTGCGTTCCAG	NA	False	NA	14	True	AATAAA	-14	NA	122634613	122665391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_122634754_122637831_122637902_122640822_122640959_122643496_122643654_122647914_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
ENSMUSG00000046603.17_6	chr9	+	3048	11	NNC	ENSMUSG00000046603.17	novel	3049	11	NA	NA	30	2	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	7.24499827467198	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAGCTGCGTTCCAGGAT	NA	False	NA	17	True	AATAAA	-17	NA	122634697	122665394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_122634852_122637831_122637902_122640822_122640959_122643496_122643654_122647838_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
ENSMUSG00000046603.17_8	chr9	+	2531	7	ISM	ENSMUSG00000046603.17	ENSMUST00000136274.3	2909	11	13177	-1	13170	1	3prime_fragment	FALSE	canonical	3	27	junction_1	2.70801280154532	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACAGCTGCGTTCCAGGA	NA	False	NA	16	True	AATAAA	-16	NA	122647837	122665393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
ENSMUSG00000046605.15_1	chr11	-	2818	13	FSM	ENSMUSG00000046605.15	ENSMUST00000067399.14	2864	13	26	20	26	-20	multi-exon	FALSE	canonical	3	46	junction_9	15.1867998238236	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGATATTAAGGCACAA	NA	False	NA	-18	True	AATAAA	-6	NA	121563953	121507042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121542434_121542500_121561695_121561796_121561882_121562000_121563810
ENSMUSG00000046605.15_15	chr11	-	1137	1	ISM	ENSMUSG00000046605.15	ENSMUST00000067399.14	2864	13	55800	20	55800	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGATATTAAGGCACAA	NA	False	NA	-18	True	AATAAA	-6	NA	121508179	121507042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_121507000_121508200
ENSMUSG00000046605.15_18	chr11	-	3005	5	ISM	ENSMUSG00000046605.15	ENSMUST00000067399.14	2864	13	47378	573	47378	-573	3prime_fragment	FALSE	canonical	3	70	junction_2	10.4163333279998	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTTTTCTAACAATGTAA	3204	False	NA	-10	True	AATAAA	-17	NA	121516601	121507595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917
ENSMUSG00000046605.15_6	chr11	-	2211	12	NIC	ENSMUSG00000046605.15	novel	2864	13	NA	NA	25	-563	combination_of_known_splicesites	FALSE	canonical	2	12	junction_9	22.2443232613485	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAATGTAAAGGGCAGAGT	NA	False	NA	0	True	AATAAA	-27	NA	121563954	121507585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121561695_121561796_121561882_121562000_121563810
ENSMUSG00000046607.7_0	chr5	+	5386	2	FSM	ENSMUSG00000046607.7	ENSMUST00000054836.7	5382	2	-7	3	-7	-3	multi-exon	FALSE	canonical	3	61	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGAATGCCTCTGTGTGT	NA	False	NA	NA	False	TTTAAA	-18	NA	118307805	118327540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_118308194_118322542
ENSMUSG00000046607.7_2	chr5	+	3389	1	ISM	ENSMUSG00000046607.7	ENSMUST00000054836.7	5382	2	16340	2	16340	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGAATGCCTCTGTGTGTT	5183	False	NA	NA	False	TTTAAA	-19	NA	118324152	118327541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_118324200_118327500
ENSMUSG00000046623.9_0	chr4	-	2444	3	NNC	ENSMUSG00000046623.9	novel	1445	2	NA	NA	2	9980	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	26	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACACCCAAGTTGTGCT	4506	False	NA	NA	False	AATAAA	-15	NA	127247872	127234898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_127236174_127245152_127246275_127247825
ENSMUSG00000046623.9_2	chr4	-	2583	4	NNC	ENSMUSG00000046623.9	novel	1445	2	NA	NA	2	9980	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	25.4689353265241	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACACCCAAGTTGTGCT	4506	False	NA	NA	False	AATAAA	-15	NA	127247872	127234898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_127236174_127238397_127238537_127245152_127246275_127247825
ENSMUSG00000046623.9_3	chr4	-	2736	2	FSM	ENSMUSG00000046623.9	ENSMUST00000060419.2	1445	2	2	-1293	2	1293	multi-exon	FALSE	canonical	3	55	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAGTAAATGGGCTGTG	4506	False	NA	NA	False	NA	NA	NA	127247872	127243585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_127246275_127247825
ENSMUSG00000046623.9_4	chr4	-	2738	2	NNC	ENSMUSG00000046623.9	novel	1446	2	NA	NA	2	1298	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	0	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAATGGGCTGTGAGCCT	4506	False	NA	NA	False	NA	NA	NA	127247872	127243580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_127246272_127247825
ENSMUSG00000046658.17_0	chr5	-	4845	7	FSM	ENSMUSG00000046658.17	ENSMUST00000161448.8	6891	7	14	2032	14	-1440	multi-exon	TRUE	canonical	0	0	junction_2	2.98607881119482	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACAAGCTTGGGGACTG	NA	False	NA	NA	False	AATAAA	-6	NA	143255763	143237483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143241321_143248547_143248662_143249050_143249178_143249805_143249898_143250047_143250437_143250760_143250889_143255605
ENSMUSG00000046658.17_1	chr5	-	2067	1	FSM	ENSMUSG00000046658.17	ENSMUST00000197349.2	5912	1	2405	1440	2405	-1440	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACAAGCTTGGGGACTG	8080	False	NA	NA	False	AATAAA	-6	NA	143239550	143237483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143237500_143239600
ENSMUSG00000046667.15_1	chr4	+	5880	2	NIC	ENSMUSG00000046667.15	novel	3069	3	NA	NA	-8	-1	intron_retention	FALSE	canonical	3	63	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGGTGGAAGAGAATTTCC	8	False	NA	NA	False	AATAAA	-17	NA	12140308	12146730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_12143460_12144001
ENSMUSG00000046667.15_10	chr4	+	2182	1	Genic_Genomic	ENSMUSG00000046667.15	novel	NA	NA	NA	NA	4240	7	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAATTTCCTGTATTCA	4256	False	NA	NA	False	AATAAA	-25	NA	12144556	12146738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_12144600_12146700
ENSMUSG00000046667.15_3	chr4	+	2919	4	NNC	ENSMUSG00000046667.15	novel	2949	4	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	14.7196014438797	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGGTGGAAGAGAATTTCC	8	False	NA	NA	False	AATAAA	-17	NA	12140308	12146730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_12140384_12140540_12140606_12143409_12143460_12144001
ENSMUSG00000046667.15_6	chr4	+	2926	4	FSM	ENSMUSG00000046667.15	ENSMUST00000050069.9	2949	4	53	-30	3	-1	multi-exon	FALSE	canonical	3	18	junction_1	18.4089350286454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGGTGGAAGAGAATTTCC	19	False	NA	NA	False	AATAAA	-17	NA	12140319	12146730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_12140402_12140540_12140606_12143409_12143460_12144001
ENSMUSG00000046667.15_8	chr4	+	3081	3	FSM	ENSMUSG00000046667.15	ENSMUST00000069128.8	3069	3	-8	-4	-8	4	multi-exon	FALSE	canonical	3	38	junction_1	12.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAGAGAATTTCCTGTAT	8	False	NA	NA	False	AATAAA	-22	NA	12140308	12146735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_12140606_12143409_12143460_12144001
ENSMUSG00000046668.10_2	chr18	+	2553	3	NIC	ENSMUSG00000046668.10	novel	2302	3	NA	NA	-2	-4	combination_of_known_junctions	FALSE	canonical	3	329	junction_2	30	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAACACTCCTGGCTTC	NA	False	NA	30	True	AATAAA	-21	NA	35962838	35994737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_35963293_35991445_35992510_35993702
ENSMUSG00000046668.10_21	chr18	+	2177	3	NIC	ENSMUSG00000046668.10	novel	857	2	NA	NA	8	-4	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	135.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAACACTCCTGGCTTC	NA	False	NA	30	True	AATAAA	-21	NA	35963374	35994737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_35963453_35991445_35992510_35993702
ENSMUSG00000046668.10_22	chr18	+	3362	2	FSM	ENSMUSG00000046668.10	ENSMUST00000235169.2	857	2	16	-2521	16	-4	multi-exon	FALSE	canonical	3	58	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAACACTCCTGGCTTC	NA	False	NA	30	True	AATAAA	-21	NA	35963382	35994737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35963453_35991445
ENSMUSG00000046668.10_25	chr18	+	2335	1	NIC	ENSMUSG00000046668.10	novel	2302	3	NA	NA	4613	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAACACTCCTGGCTTCT	NA	False	NA	31	True	AATAAA	-22	NA	35992403	35994738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_35992400_35994700
ENSMUSG00000046668.10_26	chr18	+	1865	2	ISM	ENSMUSG00000046668.10	ENSMUST00000060722.8	2302	3	28839	4	3889	-4	3prime_fragment	FALSE	canonical	3	329	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAACACTCCTGGCTTC	NA	False	NA	30	True	AATAAA	-21	NA	35991679	35994737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_35992510_35993702
ENSMUSG00000046668.10_3	chr18	+	3754	2	FSM	ENSMUSG00000046668.10	ENSMUST00000237291.2	1169	2	-115	-2470	-10	-4	multi-exon	FALSE	canonical	3	389	junction_1	0	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAACACTCCTGGCTTC	NA	False	NA	30	True	AATAAA	-21	NA	35962830	35994737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35963293_35991445
ENSMUSG00000046668.10_4	chr18	+	3496	2	ISM	ENSMUSG00000046668.10	ENSMUST00000060722.8	2302	3	-3	2	-3	-2	intron_retention	FALSE	canonical	3	48	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAACACTCCTGGCTTCTT	NA	False	NA	32	True	AATAAA	-23	NA	35962837	35994739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_35963040_35991445
ENSMUSG00000046668.10_6	chr18	+	2296	3	FSM	ENSMUSG00000046668.10	ENSMUST00000060722.8	2302	3	2	4	2	-4	multi-exon	FALSE	canonical	3	48	junction_1	140.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAACACTCCTGGCTTC	NA	False	NA	30	True	AATAAA	-21	NA	35962842	35994737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35963040_35991445_35992510_35993702
ENSMUSG00000046671.19_0	chr4	-	1823	6	ISM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	2514	17	2290	-3	3prime_fragment	FALSE	canonical	3	505	junction_1	21.3297913726318	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGGTGAATTTTTTTC	NA	False	NA	-10	True	ATTAAA	-13	NA	134260065	134252877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937
ENSMUSG00000046671.19_1	chr4	-	1864	7	FSM	ENSMUSG00000046671.19	ENSMUST00000116279.10	1969	7	95	10	6	-3	multi-exon	FALSE	canonical	3	259	junction_6	102.782402298361	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGGTGAATTTTTTTC	NA	False	NA	-10	True	ATTAAA	-13	NA	134262603	134252877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
ENSMUSG00000046671.19_2	chr4	-	1995	7	FSM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	13	17	3	-3	multi-exon	FALSE	canonical	3	105	junction_6	159.506530691797	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGGTGAATTTTTTTC	NA	False	NA	-10	True	ATTAAA	-13	NA	134262566	134252877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262392
ENSMUSG00000046671.19_4	chr4	-	1889	7	NNC	ENSMUSG00000046671.19	novel	2025	7	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	178.015604809117	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGGTGAATTTTTTTC	NA	False	NA	-10	True	ATTAAA	-13	NA	134262567	134252877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262499
ENSMUSG00000046671.19_8	chr4	-	1983	7	NIC	ENSMUSG00000046671.19	novel	2025	7	NA	NA	-23	-4	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	192.098643641461	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAATGGTGAATTTTTTT	NA	False	NA	-11	True	ATTAAA	-12	NA	134262378	134252878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262215
ENSMUSG00000046675.8_1	chr12	+	842	2	NNC	ENSMUSG00000046675.8	novel	3367	2	NA	NA	-33	-2162	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTACTTTGCTTGCTTT	NA	False	NA	-1	True	CATAAA	-14	NA	102709987	102711658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_102710030_102710858
ENSMUSG00000046675.8_2	chr12	+	1612	1	NIC	ENSMUSG00000046675.8	novel	3367	2	NA	NA	14	-2174	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAATTTTATACAATTAC	NA	False	NA	-13	True	CATAAA	-2	NA	102710034	102711646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_102710000_102711600
ENSMUSG00000046675.8_3	chr12	+	1207	2	FSM	ENSMUSG00000046675.8	ENSMUST00000057416.8	3367	2	-2	2162	-2	-2162	multi-exon	FALSE	canonical	3	165	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTACTTTGCTTGCTTT	NA	False	NA	-1	True	CATAAA	-14	NA	102710018	102711658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_102710426_102710858
ENSMUSG00000046679.17_11	chr6	+	2501	10	FSM	ENSMUSG00000046679.17	ENSMUST00000050497.14	2534	10	30	3	15	-3	multi-exon	FALSE	canonical	3	15	junction_1	6.73483664919633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGTGCCATTGATGTCA	1483	False	NA	NA	False	AATAAA	-23	NA	86415385	86447367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86415470_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
ENSMUSG00000046679.17_14	chr6	+	513	2	NNC	ENSMUSG00000046679.17	novel	505	2	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTCCATTTCTCGGGTC	1772	False	NA	NA	False	AGTAAA	-13	NA	86415674	86416467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_86415830_86416109
ENSMUSG00000046679.17_15	chr6	+	2561	10	NIC	ENSMUSG00000046679.17	novel	2630	11	NA	NA	-5	-4	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	6.89784364229722	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGGTGCCATTGATGTC	1782	False	NA	NA	False	AATAAA	-22	NA	86415684	86447366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86415830_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
ENSMUSG00000046679.17_16	chr6	+	500	2	FSM	ENSMUSG00000046679.17	ENSMUST00000143430.2	505	2	-13	18	3	-18	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATGAGATTAAACC	1774	False	NA	NA	False	NA	NA	NA	86415676	86416452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86415830_86416105
ENSMUSG00000046679.17_17	chr6	+	2974	10	NIC	ENSMUSG00000046679.17	novel	2922	10	NA	NA	-6	-3	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	9.7182531580755	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGTGCCATTGATGTCA	1781	False	NA	NA	False	AATAAA	-23	NA	86415683	86447367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86416241_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
ENSMUSG00000046679.17_18	chr6	+	3794	3	ISM	ENSMUSG00000046679.17	ENSMUST00000141972.8	2630	11	11	21555	-5	3012	intron_retention	FALSE	canonical	3	14	junction_1	10.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTGTCTTGCCTATGTA	1782	False	NA	NA	False	ATTAAA	-13	NA	86415684	86425815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_86415830_86420708_86420958_86422415
ENSMUSG00000046679.17_2	chr6	+	2502	10	NIC	ENSMUSG00000046679.17	novel	2534	10	NA	NA	10	-3	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	9.97156450941537	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGTGCCATTGATGTCA	1478	False	NA	NA	False	AATAAA	-23	NA	86415380	86447367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86415466_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
ENSMUSG00000046679.17_22	chr6	+	2529	10	NIC	ENSMUSG00000046679.17	novel	2630	11	NA	NA	-6	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	12.4612981112436	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAATGGTGCCATTGATG	1765	False	NA	NA	False	AATAAA	-20	NA	86415667	86447364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86415830_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86431241_86431296_86434797_86434906_86442782_86442946_86446727
ENSMUSG00000046679.17_3	chr6	+	778	1	NIC	ENSMUSG00000046679.17	novel	2523	10	NA	NA	-7	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGATTAAACCTCCATTTC	1780	False	NA	NA	False	AGTAAA	-6	NA	86415682	86416460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86415700_86416500
ENSMUSG00000046679.17_5	chr6	+	2561	11	NIC	ENSMUSG00000046679.17	novel	2534	10	NA	NA	10	-2	combination_of_known_junctions	FALSE	canonical	2	4	junction_7	10.3058235963944	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTGCCATTGATGTCAT	1478	False	NA	NA	False	AATAAA	-24	NA	86415380	86447368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86415470_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86431241_86431296_86434797_86434906_86439562_86439664_86442782_86442946_86446727
ENSMUSG00000046679.17_7	chr6	+	3734	3	ISM	ENSMUSG00000046679.17	ENSMUST00000050497.14	2534	10	29	21555	14	3012	intron_retention	FALSE	canonical	3	15	junction_1	10	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTGTCTTGCCTATGTA	1482	False	NA	NA	False	ATTAAA	-13	NA	86415384	86425815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_86415470_86420708_86420958_86422415
ENSMUSG00000046687.7_0	chr10	+	1545	1	FSM	ENSMUSG00000046687.7	ENSMUST00000053865.7	1240	1	-77	-228	-77	228	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAGTTACATTAGTCA	NA	False	NA	NA	False	CATAAA	-10	NA	61906824	61908369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_61906800_61908400
ENSMUSG00000046691.15_0	chr8	-	2897	4	FSM	ENSMUSG00000046691.15	ENSMUST00000177068.8	2931	4	4	30	4	1	multi-exon	FALSE	canonical	3	308	junction_2	18.5472369909914	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTGTCGCTCCATTTT	NA	False	NA	-30	True	AATAAA	-14	NA	107620221	107610524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107613159_107613551_107613670_107613932_107613989_107620132
ENSMUSG00000046691.15_5	chr8	-	3284	3	NIC	ENSMUSG00000046691.15	novel	2931	4	NA	NA	10	1	intron_retention	FALSE	canonical	3	308	junction_1	3	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTGTCGCTCCATTTT	NA	False	NA	-30	True	AATAAA	-14	NA	107620215	107610524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_107613670_107613932_107613989_107620132
ENSMUSG00000046694.7_0	chr4	+	2283	2	FSM	ENSMUSG00000046694.7	ENSMUST00000051676.7	2287	2	2	2	2	-2	multi-exon	TRUE	canonical	3	34	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATAACTGTATCTTTCTC	NA	False	NA	11	True	AATAAA	-15	NA	133207444	133215247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_133207875_133213394
ENSMUSG00000046707.10_0	chr8	-	2875	1	ISM	ENSMUSG00000046707.10	ENSMUST00000212214.2	6779	11	36273	1659	8207	1104	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGTGGCTCTTCTTGAT	NA	False	NA	-3	True	AATAAA	-16	NA	96179135	96176260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_96176300_96179100
ENSMUSG00000046707.10_10	chr8	-	1811	12	NIC	ENSMUSG00000046707.10	novel	3773	12	NA	NA	20	-5	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	88.3077825721489	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGTGGATGGAGCGT	NA	False	NA	-11	True	AATAAA	-8	NA	96215435	96174606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_96175047_96179977_96180072_96182485_96182635_96184015_96184117_96186699_96186802_96187305_96187417_96188173_96188258_96192278_96192339_96199998_96200050_96203839_96203942_96214192_96214305_96215030
ENSMUSG00000046707.10_14	chr8	-	2960	11	FSM	ENSMUSG00000046707.10	ENSMUST00000212214.2	6779	11	-36	3855	11	-1092	multi-exon	FALSE	canonical	3	227	junction_10	28.5350661467605	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGGTCCATTTCTAAATG	NA	False	NA	NA	False	AATAAA	-18	NA	96215444	96178456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_96180072_96182485_96182635_96184015_96184117_96186699_96186802_96187305_96187417_96188173_96188258_96192278_96192339_96199998_96200050_96203839_96203942_96214192_96214305_96214971
ENSMUSG00000046707.10_2	chr8	-	1879	12	FSM	ENSMUSG00000046707.10	ENSMUST00000056919.9	3773	12	11	1883	11	-5	multi-exon	FALSE	canonical	3	171	junction_1	43.8225195891393	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGTGGATGGAGCGT	NA	False	NA	-11	True	AATAAA	-8	NA	96215444	96174606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_96175047_96179977_96180072_96182485_96182635_96184015_96184117_96186699_96186802_96187305_96187417_96188173_96188258_96192278_96192339_96199998_96200050_96203839_96203942_96214192_96214305_96214971
ENSMUSG00000046707.10_23	chr8	-	3167	11	NIC	ENSMUSG00000046707.10	novel	6779	11	NA	NA	-10	-805	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	87.7781293945138	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGATCTTTATAAAGCAGG	NA	False	NA	-22	True	AATAAA	-15	NA	96215423	96178169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_96180072_96182485_96182635_96184015_96184117_96186699_96186802_96187305_96187417_96188173_96188258_96192278_96192339_96199998_96200050_96203839_96203942_96214192_96214305_96215030
ENSMUSG00000046709.19_3	chr5	-	2198	11	NIC	ENSMUSG00000046709.19	novel	6761	13	NA	NA	55	760	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGTAGAAAGAACATAT	NA	False	NA	-6	True	ATTAAA	-16	NA	103174806	103060234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_103061194_103073937_103074016_103076088_103076153_103111332_103111458_103114311_103114495_103135068_103135141_103137485_103137652_103138369_103138509_103139734_103139794_103144449_103144580_103174583
ENSMUSG00000046711.17_10	chr17	+	1919	5	FSM	ENSMUSG00000046711.17	ENSMUST00000118570.2	1898	5	-16	-5	-1	0	multi-exon	FALSE	canonical	3	442	junction_1	2173.91908485574	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTCTGGTGTAAGGAG	NA	False	NA	NA	False	AATAAA	-21	NA	27775625	27782642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27776041_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ENSMUSG00000046711.17_11	chr17	+	1654	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232265.2	1681	5	19	8	8	-1	multi-exon	FALSE	canonical	3	3635	junction_2	873.596123789477	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAGTCTCTGGTGTAAGG	NA	False	NA	NA	False	AATAAA	-19	NA	27775566	27782640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411
ENSMUSG00000046711.17_12	chr17	+	1749	6	NIC	ENSMUSG00000046711.17	novel	1045	6	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	50	junction_1	2362.29292002495	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTCTCTGGTGTAAGGA	NA	False	NA	NA	False	AATAAA	-20	NA	27775625	27782641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_27775724_27775925_27776041_27778506_27778678_27779901_27779986_27780434_27780486_27781411
ENSMUSG00000046711.17_13	chr17	+	1950	5	FSM	ENSMUSG00000046711.17	ENSMUST00000231874.2	2001	5	48	3	-1	-1	multi-exon	FALSE	canonical	3	442	junction_1	2057.89800221002	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAGTCTCTGGTGTAAGG	NA	False	NA	NA	False	AATAAA	-19	NA	27775625	27782640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27776041_27778506_27778678_27779901_27779986_27780434_27780486_27781411
ENSMUSG00000046711.17_15	chr17	+	1600	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232552.2	917	5	12	-695	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	1979.76797882984	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTCTCTGGTGTAAGGA	NA	False	NA	NA	False	AATAAA	-20	NA	27775626	27782641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27775724_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ENSMUSG00000046711.17_16	chr17	+	1676	6	FSM	ENSMUSG00000046711.17	ENSMUST00000231825.2	1717	6	37	4	-1	-2	multi-exon	FALSE	canonical	3	168	junction_1	2331.48484876055	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACAGTCTCTGGTGTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	27775625	27782639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27775686_27775925_27776041_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ENSMUSG00000046711.17_18	chr17	+	1633	5	FSM	ENSMUSG00000046711.17	ENSMUST00000119486.9	1030	5	39	-642	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	1821.9597964829	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTCTCTGGTGTAAGGA	NA	False	NA	NA	False	AATAAA	-20	NA	27775626	27782641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781411
ENSMUSG00000046711.17_21	chr17	+	1710	6	FSM	ENSMUSG00000046711.17	ENSMUST00000118599.9	1045	6	154	-819	-2	-2	multi-exon	FALSE	canonical	3	168	junction_1	2332.99755679255	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACAGTCTCTGGTGTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	27775624	27782639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27775686_27775925_27776041_27778506_27778678_27779901_27779986_27780434_27780486_27781411
ENSMUSG00000046711.17_61	chr17	+	649	1	ISM	ENSMUSG00000046711.17	ENSMUST00000232265.2	1681	5	6442	10	6321	1	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGACAGTCTCTGGTGTAA	NA	False	NA	NA	False	AATAAA	-17	NA	27781989	27782638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27782000_27782600
ENSMUSG00000046718.9_0	chr8	-	778	5	FSM	ENSMUSG00000046718.9	ENSMUST00000051672.9	792	5	5	9	5	-9	multi-exon	FALSE	canonical	3	305	junction_3	21.2176223927187	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAAAGAGCTTGCTTC	NA	False	NA	NA	False	AATAAA	-8	NA	71990095	71986907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71987125_71987315_71987437_71988429_71988470_71989002_71989079_71989771
ENSMUSG00000046718.9_1	chr8	-	1323	4	NIC	ENSMUSG00000046718.9	novel	792	5	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	313	junction_2	21.4527905462721	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGCTTGCTTCTAAGTT	NA	False	NA	NA	False	AATAAA	-14	NA	71990101	71986901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71987125_71987315_71987437_71988429_71989079_71989771
ENSMUSG00000046719.8_0	chr11	-	1875	2	FSM	ENSMUSG00000046719.8	ENSMUST00000058866.8	2099	2	216	8	216	-8	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGTATTCTATTCTAAG	NA	False	NA	-7	True	AATAAA	-12	NA	95405180	95400678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_95402359_95404985
ENSMUSG00000046721.12_0	chr7	+	708	1	FSM	ENSMUSG00000046721.12	ENSMUST00000026901.12	653	1	-21	-34	-21	34	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	44974367	44975075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44974400_44975100
ENSMUSG00000046722.15_1	chr3	+	2741	5	FSM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	60	4	-18	-4	multi-exon	FALSE	canonical	3	354	junction_1	33.5885024971343	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAAAACGGTTTCAGAGT	1934	False	NA	17	True	AATAAA	-7	NA	95136102	95143716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95136177_95139095_95139404_95139859_95139971_95140798_95140891_95141560
ENSMUSG00000046722.15_13	chr3	+	2667	4	ISM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	3053	4	-502	-4	3prime_fragment	FALSE	canonical	3	380	junction_1	29.2232783924049	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAAAACGGTTTCAGAGT	1161	False	NA	17	True	AATAAA	-7	NA	95139095	95143716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95139404_95139859_95139971_95140798_95140891_95141560
ENSMUSG00000046722.15_18	chr3	+	1417	1	ISM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	6257	4	2696	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAAAACGGTTTCAGAGT	4365	False	NA	17	True	AATAAA	-7	NA	95142299	95143716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95142300_95143700
ENSMUSG00000046727.14_1	chr18	+	796	3	FSM	ENSMUSG00000046727.14	ENSMUST00000050584.10	831	3	26	9	26	-4	multi-exon	FALSE	canonical	3	759	junction_1	90	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCTGGCTGTGTGACTT	NA	False	NA	8	True	AATAAA	-8	NA	36481775	36536024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36481870_36499567_36499795_36535549
ENSMUSG00000046727.14_2	chr18	+	910	4	FSM	ENSMUSG00000046727.14	ENSMUST00000235864.2	1101	4	65	126	27	-4	multi-exon	FALSE	canonical	3	70	junction_2	406.851597295896	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCTGGCTGTGTGACTT	NA	False	NA	8	True	AATAAA	-8	NA	36481776	36536024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36481870_36483746_36483862_36499567_36499795_36535549
ENSMUSG00000046727.14_7	chr18	+	3266	1	NIC	ENSMUSG00000046727.14	novel	1385	5	NA	NA	33925	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCTGGCTGTGTGACTT	1718	False	NA	8	True	AATAAA	-8	NA	36532758	36536024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_36532800_36536000
ENSMUSG00000046731.6_0	chr11	-	1768	1	FSM	ENSMUSG00000046731.6	ENSMUST00000238978.2	2721	1	950	3	950	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATGACGTGTAAAGGCCA	NA	False	NA	NA	False	AATAAA	-12	NA	69770861	69769093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69769100_69770900
ENSMUSG00000046733.8_1	chr6	+	2044	4	FSM	ENSMUSG00000046733.8	ENSMUST00000050104.8	2083	4	23	16	23	-16	multi-exon	FALSE	canonical	3	121	junction_1	5.71547606649408	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTTAAAATCTAAATGTT	NA	False	NA	16	True	AATAAA	-16	NA	135042671	135061691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_135042774_135055543_135056483_135060440_135060497_135060744
ENSMUSG00000046733.8_4	chr6	+	1643	3	ISM	ENSMUSG00000046733.8	ENSMUST00000050104.8	2083	4	13193	17	13193	-17	3prime_fragment	FALSE	canonical	3	128	junction_2	3.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTTAAAATCTAAATGT	NA	False	NA	15	True	AATAAA	-15	NA	135055841	135061690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_135056483_135060440_135060497_135060744
ENSMUSG00000046753.11_13	chr14	-	3933	17	NIC	ENSMUSG00000046753.11	novel	4262	18	NA	NA	-13	0	intron_retention	FALSE	canonical	3	74	junction_14	12.6229887011753	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATCTCTTGTC	7513	False	NA	NA	False	AATAAA	-15	NA	27230430	27204368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
ENSMUSG00000046753.11_2	chr14	-	2953	18	FSM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	-13	1322	-13	0	multi-exon	FALSE	canonical	3	74	junction_15	12.2471661858887	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATCTCTTGTC	7513	False	NA	NA	False	AATAAA	-15	NA	27230430	27204368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
ENSMUSG00000046753.11_31	chr14	-	2001	11	ISM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	-13	10295	-13	-8973	5prime_fragment	FALSE	canonical	3	74	junction_8	15.0283066245003	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTGTGATGAAATTCC	7513	False	NA	NA	False	ATTAAA	-17	NA	27230430	27213341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
ENSMUSG00000046753.11_4	chr14	-	2904	17	NIC	ENSMUSG00000046753.11	novel	4262	18	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_15	19.957767911267	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATCTCTTGTC	7536	False	NA	NA	False	AATAAA	-15	NA	27230407	27204368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27228607_27228673_27230378
ENSMUSG00000046756.11_0	chr11	+	1217	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	47	698	47	337	multi-exon	TRUE	canonical	3	642	junction_4	47.0451910401053	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGACGGAGAGTGCTGT	NA	False	NA	-18	True	AATAAA	-39	NA	115494797	115498164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
ENSMUSG00000046756.11_3	chr11	+	2085	4	NIC	ENSMUSG00000046756.11	novel	1962	5	NA	NA	64	339	intron_retention	FALSE	canonical	3	642	junction_3	43.1508980207828	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACGGAGAGTGCTGTTT	NA	False	NA	-16	True	AATAAA	-41	NA	115494814	115498166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_115495070_115495546_115495739_115495848_115496964_115497643
ENSMUSG00000046761.14_0	chr15	-	4499	5	FSM	ENSMUSG00000046761.14	ENSMUST00000170153.2	4534	5	23	12	23	-12	multi-exon	FALSE	canonical	1	3	junction_2	2.06155281280883	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACGTTCTGTGATCCCAAG	7445	False	NA	NA	False	AATAAA	-12	NA	75881324	75872953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75876599_75876789_75876915_75876983_75877149_75877949_75878412_75881222
ENSMUSG00000046761.14_2	chr15	-	5434	4	NIC	ENSMUSG00000046761.14	novel	4534	5	NA	NA	-19	812	intron_retention	FALSE	canonical	3	7	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAGGCAAAAAAA	7403	False	NA	NA	False	NA	NA	NA	75881366	75872129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_75876599_75876789_75877149_75877949_75878412_75881222
ENSMUSG00000046774.18_0	chrX	+	2016	7	FSM	ENSMUSG00000046774.18	ENSMUST00000163399.8	1991	7	-23	-2	-23	0	multi-exon	FALSE	canonical	3	67	junction_5	79.7050116924205	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGTACTTTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	100838238	100842246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
ENSMUSG00000046774.18_10	chrX	+	2813	4	NIC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	-22	0	intron_retention	FALSE	canonical	3	266	junction_2	15.121728296285	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGTACTTTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	100838239	100842246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100839695_100840283_100840444_100840965_100841990_100842072
ENSMUSG00000046774.18_12	chrX	+	3924	2	NIC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	-22	0	intron_retention	FALSE	canonical	3	283	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGTACTTTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	100838239	100842246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100841990_100842072
ENSMUSG00000046774.18_3	chrX	+	2200	6	NIC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	-22	0	intron_retention	FALSE	canonical	3	236	junction_4	22.2656686403081	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGTACTTTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	100838239	100842246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
ENSMUSG00000046774.18_5	chrX	+	2025	7	NIC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	-23	0	intron_retention	FALSE	canonical	3	47	junction_5	86.9329243344162	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGTACTTTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	100838238	100842246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841772_100841947_100841990_100842072
ENSMUSG00000046774.18_7	chrX	+	3400	3	NIC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	-22	0	intron_retention	FALSE	canonical	3	266	junction_1	8.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCTGTACTTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	100838239	100842244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100840444_100840965_100841990_100842072
ENSMUSG00000046774.18_8	chrX	+	2484	5	NIC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	-33	0	intron_retention	FALSE	canonical	3	236	junction_3	24.5662369930765	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGTACTTTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	100838228	100842246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100839695_100840283_100840444_100840965_100841368_100841707_100841990_100842072
ENSMUSG00000046785.9_0	chr9	+	7166	1	FSM	ENSMUSG00000046785.9	ENSMUST00000060711.8	7149	1	-21	4	-5	0	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTTGTGTTTGTCTT	NA	False	NA	9	True	NA	NA	NA	111100991	111108157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_111101000_111108200
ENSMUSG00000046785.9_1	chr9	+	4345	2	FSM	ENSMUSG00000046785.9	ENSMUST00000200053.2	578	2	-2219	-1548	-46	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTTGTGTTTGTCTT	NA	False	NA	9	True	NA	NA	NA	111100950	111108157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_111103596_111106457
ENSMUSG00000046785.9_2	chr9	+	4307	2	FSM	ENSMUSG00000046785.9	ENSMUST00000135807.2	4245	2	-59	-3	-59	-1	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGTGTTTGTCTTTCA	NA	False	NA	12	True	NA	NA	NA	111100937	111108160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_111103596_111106511
ENSMUSG00000046791.9_0	chr12	+	2264	1	FSM	ENSMUSG00000046791.9	ENSMUST00000053744.9	2344	1	66	14	66	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	428	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCCAAAGACCATCTTTC	4041	False	NA	3	True	ATTAAA	-7	NA	83997447	83999711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_83997400_83999700
ENSMUSG00000046792.9_0	chr7	-	1884	3	FSM	ENSMUSG00000046792.9	ENSMUST00000094870.3	1897	3	12	1	12	-1	multi-exon	FALSE	canonical	3	46	junction_1	59	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCACTGCCTGTTTCTTG	9638	False	NA	-2	True	AATAAA	-19	NA	6158958	6134490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_6136171_6146060_6146150_6158843
ENSMUSG00000046792.9_2	chr7	-	1120	1	ISM	ENSMUSG00000046792.9	ENSMUST00000094870.3	1897	3	23360	1	10234	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCACTGCCTGTTTCTTG	NA	False	NA	-2	True	AATAAA	-19	NA	6135610	6134490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_6134500_6135600
ENSMUSG00000046792.9_4	chr7	-	1950	4	NNC	ENSMUSG00000046792.9	novel	1897	3	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	74.9933330370107	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCACTGCCTGTTTCTTG	9639	False	NA	-2	True	AATAAA	-19	NA	6158957	6134490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_6136171_6137640_6137708_6146060_6146150_6158843
ENSMUSG00000046792.9_5	chr7	-	538	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207628.2	576	3	38	0	12	0	multi-exon	FALSE	canonical	3	90	junction_1	37	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAACTCGAAGTTCATGC	9638	False	NA	-10	True	AATAAA	-16	NA	6158958	6145284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_6145619_6146060_6146150_6158843
ENSMUSG00000046792.9_6	chr7	-	973	2	FSM	ENSMUSG00000046792.9	ENSMUST00000207957.2	880	2	-33	-60	12	-7	multi-exon	FALSE	canonical	3	164	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATCCTGACAACTCGAAG	9638	False	NA	-17	True	AATAAA	-9	NA	6158958	6145291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_6146150_6158843
ENSMUSG00000046794.10_0	chr8	+	4232	2	FSM	ENSMUSG00000046794.10	ENSMUST00000070481.8	4221	2	-28	17	-26	-7	multi-exon	FALSE	canonical	2	5	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAGAAAGAAAAGAAAATGA	NA	False	NA	NA	False	NA	NA	NA	35842866	35855276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_35842960_35851137
ENSMUSG00000046794.10_1	chr8	+	4279	2	FSM	ENSMUSG00000046794.10	ENSMUST00000210337.2	4349	2	-11	81	-11	-81	multi-exon	FALSE	canonical	3	17	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	35842881	35855202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_35843096_35851137
ENSMUSG00000046794.10_4	chr8	+	4235	2	ISM	ENSMUSG00000046794.10	ENSMUST00000211648.2	4386	3	893	19	-9	-14	3prime_fragment	FALSE	canonical	3	26	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATATAGAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	35843804	35855269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_35843908_35851137
ENSMUSG00000046794.10_6	chr8	+	3550	1	ISM	ENSMUSG00000046794.10	ENSMUST00000210337.2	4349	2	8825	16	7904	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAATAAATATAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	35851717	35855267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_35851700_35855300
ENSMUSG00000046798.15_0	chr5	-	3563	4	FSM	ENSMUSG00000046798.15	ENSMUST00000060947.14	3597	4	30	4	-18	-2	multi-exon	FALSE	canonical	3	56	junction_3	5.18544972870135	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGTCTCTGTCCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	5564843	5555112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564764
ENSMUSG00000046798.15_1	chr5	-	2947	1	ISM	ENSMUSG00000046798.15	ENSMUST00000179804.8	3752	5	6730	98	6390	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGTCTCTGTCCTT	1474	False	NA	-7	True	ATTAAA	-13	NA	5558059	5555112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_5555100_5558100
ENSMUSG00000046798.15_3	chr5	-	3599	4	ISM	ENSMUSG00000046798.15	ENSMUST00000179804.8	3752	5	443	98	103	-2	3prime_fragment	FALSE	canonical	2	3	junction_3	30.169889330626	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGTCTCTGTCCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	5564346	5555112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564231
ENSMUSG00000046798.15_4	chr5	-	3649	4	NIC	ENSMUSG00000046798.15	novel	3597	4	NA	NA	16	-2	combination_of_known_junctions	FALSE	canonical	1	6	junction_2	26.5455583227527	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGTCTCTGTCCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	5564857	5555112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_5558455_5561070_5561195_5563161_5563252_5564764
ENSMUSG00000046798.15_5	chr5	-	3587	4	FSM	ENSMUSG00000046798.15	ENSMUST00000115445.8	3477	4	0	-110	0	-2	multi-exon	FALSE	canonical	3	7	junction_3	28.2842712474619	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGTCTCTGTCCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	5564730	5555112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564627
ENSMUSG00000046806.14_0	chr6	-	2676	2	FSM	ENSMUSG00000046806.14	ENSMUST00000140458.2	709	2	-306	-1661	-157	10	multi-exon	FALSE	canonical	3	23	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGACTATTCAATCCTGTTC	8371	False	NA	-10	True	NA	NA	NA	34854221	34850619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_34852548_34853473
ENSMUSG00000046806.14_2	chr6	-	4357	1	NIC	ENSMUSG00000046806.14	novel	3326	4	NA	NA	1	-8	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGTGTGTGTTTGTGAC	7598	False	NA	-28	True	AATAAA	-43	NA	34854994	34850637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_34850600_34855000
ENSMUSG00000046806.14_3	chr6	-	2307	3	NIC	ENSMUSG00000046806.14	novel	1501	4	NA	NA	15	10	intron_retention	FALSE	canonical	3	18	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGACTATTCAATCCTGTTC	7612	False	NA	-10	True	NA	NA	NA	34854980	34850619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_34852548_34853473_34853707_34854834
ENSMUSG00000046806.14_4	chr6	-	1541	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115006.2	1501	4	-41	1	10	-1	multi-exon	FALSE	canonical	1	2	junction_1	8.9566858950296	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTTTGTGACGACTATT	7607	False	NA	-21	True	NA	NA	NA	34854985	34850630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_34851631_34852390_34852548_34853473_34853707_34854834
ENSMUSG00000046806.14_5	chr6	-	1434	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115007.9	3326	4	47	1845	-4	10	multi-exon	FALSE	canonical	3	11	junction_1	4.92160768674447	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGACTATTCAATCCTGTTC	7644	False	NA	-10	True	NA	NA	NA	34854948	34850619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_34851631_34852471_34852548_34853473_34853707_34854834
ENSMUSG00000046807.11_1	chr10	-	4412	4	FSM	ENSMUSG00000046807.11	ENSMUST00000051129.10	4601	4	183	6	183	-6	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTAAAGTGTGCAGCGG	NA	False	NA	NA	False	AATAAA	-17	NA	75395981	75385964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75389955_75391783_75391885_75393053_75393183_75395789
ENSMUSG00000046808.18_1	chr5	+	6035	23	FSM	ENSMUSG00000046808.18	ENSMUST00000126664.8	6052	23	2	15	2	-1	multi-exon	FALSE	canonical	3	78	junction_3	13.360930461982	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTCACTGGAAACTGTC	NA	False	NA	9	True	AATAAA	-14	NA	72360673	72456103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_72360907_72384974_72385302_72387619_72387815_72396440_72396646_72399378_72399465_72403046_72403154_72403434_72403567_72404159_72404288_72404395_72404649_72412253_72412490_72418266_72418456_72421345_72421956_72423313_72423418_72424749_72424877_72426614_72426800_72434421_72434729_72436727_72436805_72437386_72437513_72439447_72439649_72445485_72445567_72446660_72446766_72452984_72453173_72454270
ENSMUSG00000046808.18_12	chr5	+	5979	23	NIC	ENSMUSG00000046808.18	novel	6052	23	NA	NA	2	-8	intron_retention	TRUE	canonical	3	10	junction_18	23.9049426059076	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGATGTTCACTGGA	NA	False	NA	2	True	AATAAA	-7	NA	72360673	72456096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_72360907_72384974_72385302_72387619_72387815_72396440_72396646_72399378_72399465_72403046_72403154_72403434_72403567_72404159_72404288_72404395_72404649_72412253_72412490_72418266_72418456_72421345_72421956_72423313_72423418_72424749_72424877_72426614_72426800_72434421_72434729_72436727_72436805_72437386_72437513_72439496_72439649_72445485_72445567_72446660_72446766_72452984_72453173_72454270
ENSMUSG00000046808.18_3	chr5	+	5910	24	NNC	ENSMUSG00000046808.18	novel	6052	23	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	25.1562978093101	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTTCACTGGAAACTGT	NA	False	NA	8	True	AATAAA	-13	NA	72360675	72456102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_72360907_72384974_72385302_72387619_72387815_72396440_72396646_72399378_72399465_72403046_72403154_72403434_72403567_72404159_72404288_72404395_72404649_72412253_72412490_72418266_72418456_72421345_72421956_72423313_72423418_72424749_72424877_72426614_72426800_72434421_72434729_72436727_72436805_72437386_72437513_72439447_72439649_72445485_72445567_72446660_72446766_72452984_72453173_72454270_72454965_72455086
ENSMUSG00000046811.4_0	chr11	+	2735	2	FSM	ENSMUSG00000046811.4	ENSMUST00000179000.2	794	2	-39	-1902	-39	1685	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATCAGGAAAGCCAAG	NA	False	NA	NA	False	AATAAA	-11	NA	70410425	70413247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70410710_70410796
ENSMUSG00000046811.4_1	chr11	+	1102	1	NIC	ENSMUSG00000046811.4	novel	1216	3	NA	NA	-5	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCCGGCGTTATGTATGA	NA	False	NA	NA	False	AATAAA	-21	NA	70410459	70411561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70410500_70411600
ENSMUSG00000046818.8_0	chr3	+	2643	3	FSM	ENSMUSG00000046818.8	ENSMUST00000053855.8	2722	3	67	12	67	-12	multi-exon	FALSE	canonical	3	67	junction_2	6.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATTTTTAATTCCCTTG	NA	False	NA	NA	False	AATAAA	-6	NA	137329499	137334082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_137329645_137329892_137330035_137331726
ENSMUSG00000046818.8_1	chr3	+	2903	2	FSM	ENSMUSG00000046818.8	ENSMUST00000165845.2	446	2	-300	-2157	65	-2	multi-exon	FALSE	canonical	3	67	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCCTTGGCCTCTTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	137329497	137334092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_137330035_137331726
ENSMUSG00000046822.15_0	chr10	-	3626	4	FSM	ENSMUSG00000046822.15	ENSMUST00000117276.11	3796	4	155	15	11	-12	multi-exon	FALSE	canonical	3	49	junction_3	7.58653778449403	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTAAACTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	80873105	80864386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80867535_80869445_80869768_80870751_80870840_80873037
ENSMUSG00000046822.15_1	chr10	-	3555	3	NIC	ENSMUSG00000046822.15	novel	3796	4	NA	NA	1	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	25.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTATTTATTTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	80873115	80864379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80867535_80869445_80869768_80873037
ENSMUSG00000046822.15_2	chr10	-	3396	2	FSM	ENSMUSG00000046822.15	ENSMUST00000168076.2	3461	2	59	6	59	-6	multi-exon	FALSE	canonical	3	51	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTATTTATTTATTTGT	NA	False	NA	NA	False	NA	NA	NA	80869687	80864380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80867535_80869445
ENSMUSG00000046822.15_3	chr10	-	2491	1	ISM	ENSMUSG00000046822.15	ENSMUST00000117276.11	3796	4	6389	9	2875	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTATTTATTTATTTGT	NA	False	NA	NA	False	NA	NA	NA	80866871	80864380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80864400_80866900
ENSMUSG00000046822.15_4	chr10	-	3606	4	FSM	ENSMUSG00000046822.15	ENSMUST00000059551.7	3680	4	32	42	6	-41	multi-exon	FALSE	canonical	3	7	junction_3	25.0377492776186	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCCTTTTGCAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	80873110	80864415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80867535_80869445_80869768_80870751_80870844_80873037
ENSMUSG00000046822.15_6	chr10	-	1570	4	NIC	ENSMUSG00000046822.15	novel	3796	4	NA	NA	5	-2258	intron_retention	FALSE	canonical	0	0	junction_3	28.2488937836511	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAAGCCTGTGTGGCCAT	NA	False	NA	-7	True	TTTAAA	-19	NA	80873079	80866632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80867535_80869445_80869768_80870751_80870840_80872821
ENSMUSG00000046836.14_0	chr1	-	3439	14	FSM	ENSMUSG00000046836.14	ENSMUST00000163528.8	3413	14	-27	1	-14	-1	multi-exon	FALSE	canonical	3	26	junction_13	29.2690033348083	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTCGCTGGATTTATG	NA	False	NA	NA	False	AATAAA	-14	NA	183078827	183057918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078725
ENSMUSG00000046836.14_14	chr1	-	1528	1	ISM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	19090	3	8300	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTCGCTGGATTTATG	NA	False	NA	NA	False	AATAAA	-14	NA	183059446	183057918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_183057900_183059400
ENSMUSG00000046836.14_2	chr1	-	3446	14	NNC	ENSMUSG00000046836.14	novel	3430	14	NA	NA	-16	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	35.6111477792256	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTCGCTGGATTTATG	NA	False	NA	NA	False	AATAAA	-14	NA	183078552	183057918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076018_183076340_183076429_183078446
ENSMUSG00000046836.14_21	chr1	-	2352	3	ISM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	16061	7	5271	-5	3prime_fragment	FALSE	canonical	3	140	junction_1	2	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTACATGTTCGCTGGATT	NA	False	NA	NA	False	AATAAA	-10	NA	183062475	183057922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_183060003_183061033_183061194_183062363
ENSMUSG00000046836.14_4	chr1	-	3441	14	FSM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	-14	3	-14	-1	multi-exon	FALSE	canonical	3	98	junction_3	13.1918030852137	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTCGCTGGATTTATG	NA	False	NA	NA	False	AATAAA	-14	NA	183078550	183057918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446
ENSMUSG00000046841.6_0	chr10	-	3056	2	FSM	ENSMUSG00000046841.6	ENSMUST00000053871.5	3089	2	30	3	4	-3	multi-exon	FALSE	canonical	3	271	junction_1	0	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCAGTGGGTTCTGAGA	NA	False	NA	-18	True	AATAAA	-23	NA	84369896	84362171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_84364642_84369310
ENSMUSG00000046841.6_1	chr10	-	1792	1	ISM	ENSMUSG00000046841.6	ENSMUST00000053871.5	3089	2	5963	3	5937	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCAGTGGGTTCTGAGA	NA	False	NA	-18	True	AATAAA	-23	NA	84363963	84362171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_84362200_84364000
ENSMUSG00000046846.5_0	chr9	-	1536	2	FSM	ENSMUSG00000046846.5	ENSMUST00000056949.5	3042	2	-14	1520	-14	-1520	multi-exon	FALSE	canonical	3	9	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTAGTTTTTTTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	62189504	62179530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_62180846_62189283
ENSMUSG00000046861.10_1	chr4	+	3474	21	FSM	ENSMUSG00000046861.10	ENSMUST00000050067.10	4583	21	11	1098	11	730	multi-exon	FALSE	canonical	3	56	junction_7	8.68964901477614	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTAGAATGTGCTTT	NA	False	NA	4	True	AATAAA	-12	NA	116852524	116861376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_116852969_116853143_116853305_116853557_116853651_116853728_116853865_116854110_116854227_116854314_116854429_116854544_116854628_116855573_116855740_116855940_116856023_116856774_116856958_116857085_116857139_116857285_116857351_116857443_116857548_116857793_116857914_116858018_116858109_116859312_116859520_116859706_116859837_116859933_116860009_116860130_116860213_116860315_116860388_116860478
ENSMUSG00000046861.10_21	chr4	+	1405	6	ISM	ENSMUSG00000046861.10	ENSMUST00000050067.10	4583	21	6858	1098	-681	730	3prime_fragment	FALSE	canonical	3	59	junction_2	4.17612260356422	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTAGAATGTGCTTT	NA	False	NA	4	True	AATAAA	-12	NA	116859371	116861376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_116859520_116859706_116859837_116859933_116860009_116860130_116860213_116860315_116860388_116860478
ENSMUSG00000046862.15_0	chr4	+	3290	4	FSM	ENSMUSG00000046862.15	ENSMUST00000037356.8	3260	4	-34	4	-19	-4	multi-exon	FALSE	canonical	3	80	junction_1	39.6316371938716	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCTCTGTTTCACTTCC	NA	False	NA	6	True	AATAAA	-13	NA	143139522	143147657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_143139662_143143209_143143523_143143942_143144531_143145407
ENSMUSG00000046862.15_1	chr4	+	3353	5	FSM	ENSMUSG00000046862.15	ENSMUST00000059790.11	3886	5	529	4	-17	-4	multi-exon	FALSE	canonical	3	58	junction_2	51.5866988670529	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCTCTGTTTCACTTCC	NA	False	NA	6	True	AATAAA	-13	NA	143139524	143147657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_143139662_143141918_143141984_143143209_143143523_143143942_143144531_143145407
ENSMUSG00000046862.15_3	chr4	+	3326	4	NIC	ENSMUSG00000046862.15	novel	3260	4	NA	NA	-35	-4	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	75.7011668778406	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCTCTGTTTCACTTCC	NA	False	NA	6	True	AATAAA	-13	NA	143139506	143147657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_143139662_143143189_143143523_143143942_143144531_143145407
ENSMUSG00000046862.15_8	chr4	+	1850	1	ISM	ENSMUSG00000046862.15	ENSMUST00000059790.11	3886	5	6812	4	6228	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCTCTGTTTCACTTCC	NA	False	NA	6	True	AATAAA	-13	NA	143145807	143147657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_143145800_143147700
ENSMUSG00000046865.8_0	chr7	+	1173	9	FSM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	24	0	12	0	multi-exon	FALSE	canonical	3	2081	junction_3	279.620725269069	1643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8555	False	NA	0	True	ATTAAA	-14	NA	27869158	27878694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
ENSMUSG00000046865.8_30	chr7	+	959	8	ISM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	4923	0	-239	0	3prime_fragment	FALSE	canonical	3	2081	junction_2	289.060970900534	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	NA	False	NA	0	True	ATTAAA	-14	NA	27874057	27878694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
ENSMUSG00000046873.19_0	chrX	-	4732	11	FSM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	53	12	-11	-12	multi-exon	FALSE	canonical	3	154	junction_9	30.3809150619266	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTACGTTTATCATCTTC	NA	False	NA	-17	True	AATAAA	-23	NA	156381658	156330831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
ENSMUSG00000046873.19_1	chrX	-	4583	10	NIC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	-11	-12	combination_of_known_junctions	FALSE	canonical	3	97	junction_9	42.882267767562	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTACGTTTATCATCTTC	NA	False	NA	-17	True	AATAAA	-23	NA	156381658	156330831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156381491
ENSMUSG00000046873.19_3	chrX	-	2434	1	ISM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	48446	12	18736	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTACGTTTATCATCTTC	NA	False	NA	-17	True	AATAAA	-23	NA	156333265	156330831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_156330800_156333300
ENSMUSG00000046873.19_36	chrX	-	2748	2	ISM	ENSMUSG00000046873.19	ENSMUST00000065857.6	1737	9	20	30750	20	-174	5prime_fragment	FALSE	canonical	3	27	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAAATAGCTTGCTTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	156351981	156349116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_156351813_156351929
ENSMUSG00000046873.19_38	chrX	-	3452	6	NIC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	0	-172	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	99.5630453531831	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATAGCTTGCTTGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	156381646	156349114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_156351813_156351929_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156381491
ENSMUSG00000046879.8_0	chr11	-	191	1	ISM	ENSMUSG00000046879.8	ENSMUST00000049519.4	2259	3	5838	101	5838	-97	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTGGGAAAAAAATTAGAA	NA	False	NA	NA	False	NA	NA	NA	48756363	48756172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_48756200_48756400
ENSMUSG00000046881.8_0	chr8	+	144	1	ISM	ENSMUSG00000046881.8	ENSMUST00000210435.4	8718	2	8487	2477	6041	-2477	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGAAGTGTCACTGG	NA	False	NA	NA	False	NA	NA	NA	72869370	72869514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_72869400_72869500
ENSMUSG00000046897.18_1	chr15	+	4267	8	NIC	ENSMUSG00000046897.18	novel	4241	8	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	55.5683069266455	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	909	False	NA	17	True	AATAAA	-18	NA	102112085	102124033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102112238_102113005_102113522_102113663_102113741_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
ENSMUSG00000046897.18_10	chr15	+	4188	7	NIC	ENSMUSG00000046897.18	novel	989	7	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	66.5699298148613	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	911	False	NA	17	True	AATAAA	-18	NA	102112087	102124033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102112238_102113005_102113522_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
ENSMUSG00000046897.18_11	chr15	+	4058	8	NIC	ENSMUSG00000046897.18	novel	3932	7	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	67.0686520039925	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCATGTCCTCTTTGAGA	917	False	NA	19	True	AATAAA	-20	NA	102112093	102124035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102112238_102113005_102113319_102113663_102113741_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
ENSMUSG00000046897.18_18	chr15	+	3990	7	FSM	ENSMUSG00000046897.18	ENSMUST00000141465.9	989	7	-43	-2958	0	0	multi-exon	FALSE	canonical	0	0	junction_4	67.1203314122397	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	906	False	NA	17	True	AATAAA	-18	NA	102112082	102124033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102112238_102113005_102113319_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
ENSMUSG00000046897.18_21	chr15	+	4146	7	NIC	ENSMUSG00000046897.18	novel	4241	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	67.1912692741153	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	917	False	NA	17	True	AATAAA	-18	NA	102112093	102124033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102112238_102113005_102113522_102116205_102116356_102116706_102116797_102117187_102117312_102117589_102117709_102121030
ENSMUSG00000046897.18_3	chr15	+	4225	8	FSM	ENSMUSG00000046897.18	ENSMUST00000118729.8	4241	8	9	7	-2	0	multi-exon	FALSE	canonical	0	0	junction_5	56.9883625785805	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	915	False	NA	17	True	AATAAA	-18	NA	102112091	102124033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102112238_102113005_102113522_102113663_102113741_102116205_102116356_102116706_102116797_102117187_102117312_102117589_102117709_102121030
ENSMUSG00000046897.18_54	chr15	+	4513	7	ISM	ENSMUSG00000046897.18	ENSMUST00000118729.8	4241	8	489	7	428	0	3prime_fragment	FALSE	canonical	0	0	junction_4	57.2247032903332	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	1395	False	NA	17	True	AATAAA	-18	NA	102112571	102124033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102113522_102113663_102113741_102116205_102116356_102116706_102116797_102117187_102117312_102117589_102117709_102121030
ENSMUSG00000046897.18_56	chr15	+	4613	7	NIC	ENSMUSG00000046897.18	novel	3882	7	NA	NA	366	-1	intron_retention	FALSE	canonical	0	0	junction_4	56.6235129802295	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCATGTCCTCTTTGAGA	1333	False	NA	19	True	AATAAA	-20	NA	102112509	102124035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102113522_102113663_102113741_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
ENSMUSG00000046897.18_67	chr15	+	2113	1	ISM	ENSMUSG00000046897.18	ENSMUST00000118729.8	4241	8	9838	7	5224	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	2837	False	NA	17	True	AATAAA	-18	NA	102121920	102124033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102121900_102124000
ENSMUSG00000046897.18_8	chr15	+	3942	7	NIC	ENSMUSG00000046897.18	novel	989	7	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	67.6824694190945	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	918	False	NA	17	True	AATAAA	-18	NA	102112094	102124033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102112238_102113005_102113319_102116205_102116356_102116706_102116797_102117187_102117312_102117589_102117709_102121030
ENSMUSG00000046909.10_0	chr11	-	1282	4	FSM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	23	4	-9	-4	multi-exon	FALSE	canonical	3	265	junction_2	2.16024689946929	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTCTGTGCCTTCTTTGC	NA	False	NA	-8	True	AATAAA	-10	NA	80032978	80027507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_80028106_80028743_80028894_80030691_80031150_80032902
ENSMUSG00000046909.10_5	chr11	-	1205	3	ISM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	1854	3	-412	-3	3prime_fragment	FALSE	canonical	3	265	junction_2	2.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGTGCCTTCTTTGCT	NA	False	NA	-7	True	AATAAA	-11	NA	80031147	80027506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_80028106_80028743_80028894_80030691
ENSMUSG00000046909.10_6	chr11	-	1523	4	NIC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	-3	-4	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	108.206592528675	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTCTGTGCCTTCTTTGC	NA	False	NA	-8	True	AATAAA	-10	NA	80032972	80027507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_80028106_80028743_80028894_80030691_80031397_80032902
ENSMUSG00000046942.18_0	chrX	-	1000	1	ISM	ENSMUSG00000046942.18	ENSMUST00000114016.10	1725	3	11350	2	11350	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGTGCTCTCTTTTATT	NA	False	NA	-2	True	AATAAA	-20	NA	78667838	78666838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_78666800_78667800
ENSMUSG00000046942.18_1	chrX	-	1908	4	FSM	ENSMUSG00000046942.18	ENSMUST00000052283.7	1854	4	-56	2	-56	-2	multi-exon	FALSE	canonical	3	76	junction_2	116.448367194316	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGTGCTCTCTTTTATT	NA	False	NA	-2	True	AATAAA	-20	NA	78715097	78666838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_78668390_78671446_78671527_78685326_78685395_78714888
ENSMUSG00000046942.18_2	chrX	-	1700	3	FSM	ENSMUSG00000046942.18	ENSMUST00000114016.10	1725	3	21	4	21	-4	multi-exon	FALSE	canonical	3	241	junction_2	42	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTTGTGCTCTCTTTTA	NA	False	NA	-4	True	AATAAA	-18	NA	78679167	78666840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_78668390_78671446_78671527_78679096
ENSMUSG00000046947.13_0	chr6	+	2494	8	FSM	ENSMUSG00000046947.13	ENSMUST00000140364.8	3542	8	29	1019	29	-2	multi-exon	FALSE	canonical	3	19	junction_2	10.7437689582647	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTTCTTCTTCTTA	NA	False	NA	16	True	AATACA	-16	NA	39550835	39564684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_39552141_39553296_39553444_39556596_39556726_39557929_39558026_39560744_39560997_39562660_39562790_39563774_39563829_39564302
ENSMUSG00000046949.17_0	chr13	+	3195	7	FSM	ENSMUSG00000046949.17	ENSMUST00000058978.9	3842	7	18	629	18	-629	multi-exon	FALSE	canonical	3	158	junction_1	21.7995922489899	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTTTTTCTCTTAGATA	NA	False	NA	7	True	NA	NA	NA	34148687	34171797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_34148784_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
ENSMUSG00000046949.17_13	chr13	+	2497	1	ISM	ENSMUSG00000046949.17	ENSMUST00000058978.9	3842	7	21254	6	18788	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATCATTCCTCTCATT	6876	False	NA	8	True	ATTAAA	-12	NA	34169923	34172420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_34169900_34172400
ENSMUSG00000046949.17_2	chr13	+	3258	8	FSM	ENSMUSG00000046949.17	ENSMUST00000021843.13	1063	8	-26	-2169	-26	-628	multi-exon	FALSE	canonical	3	53	junction_2	70.4179939898249	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTTTCTCTTAGATAT	NA	False	NA	8	True	NA	NA	NA	34148707	34171798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_34148784_34150027_34150110_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
ENSMUSG00000046962.17_0	chr16	-	3431	2	NIC	ENSMUSG00000046962.17	novel	5463	2	NA	NA	0	-2	intron_retention	FALSE	canonical	3	25	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTAAGTTTGGGATGAA	NA	False	NA	-6	True	AATAAA	-22	NA	97763815	97750965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_97754294_97763712
ENSMUSG00000046962.17_1	chr16	-	3364	1	ISM	ENSMUSG00000046962.17	ENSMUST00000113734.9	6010	3	11415	408	1892	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACATTTATAATGCAGT	NA	False	NA	-10	True	AATAAA	-11	NA	97752406	97749042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_97749000_97752400
ENSMUSG00000046962.17_11	chr16	-	3532	2	FSM	ENSMUSG00000046962.17	ENSMUST00000063605.15	5463	2	-2	1933	-2	-2	multi-exon	FALSE	canonical	3	32	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTAAGTTTGGGATGAA	NA	False	NA	-6	True	AATAAA	-22	NA	97763817	97750965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_97754294_97763613
ENSMUSG00000046962.17_12	chr16	-	2411	1	ISM	ENSMUSG00000046962.17	ENSMUST00000113734.9	6010	3	10443	2333	920	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTTTAAGTTTGGGATG	NA	False	NA	-8	True	AATAAA	-20	NA	97753378	97750967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_97751000_97753400
ENSMUSG00000046962.17_14	chr16	-	2055	2	FSM	ENSMUSG00000046962.17	ENSMUST00000231256.2	2735	2	678	2	678	-2	multi-exon	FALSE	canonical	3	41	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTAAGTTTGGGATGAA	9840	False	NA	-6	True	AATAAA	-22	NA	97753620	97750965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_97752070_97752669
ENSMUSG00000046962.17_2	chr16	-	2930	3	NIC	ENSMUSG00000046962.17	novel	3072	4	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	4.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTAAGTTTGGGATGAA	NA	False	NA	-6	True	AATAAA	-22	NA	97763815	97750965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_97752070_97752669_97754294_97763613
ENSMUSG00000046962.17_4	chr16	-	3073	4	FSM	ENSMUSG00000046962.17	ENSMUST00000052089.9	3072	4	-6	5	0	-2	multi-exon	FALSE	canonical	3	41	junction_1	18.4451137763426	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTAAGTTTGGGATGAA	NA	False	NA	-6	True	AATAAA	-22	NA	97763815	97750965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_97752070_97752669_97754294_97757957_97758101_97763613
ENSMUSG00000046962.17_6	chr16	-	3574	3	FSM	ENSMUSG00000046962.17	ENSMUST00000231560.2	397	3	7	-3184	0	-2	multi-exon	FALSE	canonical	2	12	junction_2	37	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTAAGTTTGGGATGAA	NA	False	NA	-6	True	AATAAA	-22	NA	97763815	97750965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_97754294_97757957_97758101_97763712
ENSMUSG00000046962.17_7	chr16	-	2832	3	NIC	ENSMUSG00000046962.17	novel	3072	4	NA	NA	-2	-3	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	8	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTTAAGTTTGGGATGA	NA	False	NA	-7	True	AATAAA	-21	NA	97763817	97750966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_97752070_97752669_97754294_97763712
ENSMUSG00000046962.17_9	chr16	-	3675	3	FSM	ENSMUSG00000046962.17	ENSMUST00000113734.9	6010	3	4	2331	-2	-2	multi-exon	FALSE	canonical	3	60	junction_2	13	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTAAGTTTGGGATGAA	NA	False	NA	-6	True	AATAAA	-22	NA	97763817	97750965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_97754294_97757957_97758101_97763613
ENSMUSG00000046971.8_1	chr2	-	1590	5	ISM	ENSMUSG00000046971.8	ENSMUST00000142183.2	2610	15	8953	10	8953	-1	3prime_fragment	FALSE	canonical	2	10	junction_2	2.54950975679639	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGTGTCACTGAGCCTG	3701	False	NA	NA	False	AATAAA	-21	NA	120133905	120130447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133547
ENSMUSG00000046971.8_2	chr2	-	1531	6	ISM	ENSMUSG00000046971.8	ENSMUST00000054651.8	3116	20	10722	1	8934	-1	3prime_fragment	FALSE	canonical	2	5	junction_5	3.9293765408777	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGTGTCACTGAGCCTG	3682	False	NA	NA	False	AATAAA	-21	NA	120133924	120130447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133547_120133656_120133733
ENSMUSG00000046971.8_3	chr2	-	1422	5	NIC	ENSMUSG00000046971.8	novel	3116	20	NA	NA	8935	-1	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	4.76313972081441	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGTGTCACTGAGCCTG	3683	False	NA	NA	False	AATAAA	-21	NA	120133923	120130447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133733
ENSMUSG00000046971.8_6	chr2	-	1001	2	ISM	ENSMUSG00000046971.8	ENSMUST00000142183.2	2610	15	11142	10	11142	-1	3prime_fragment	FALSE	canonical	2	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGTGTCACTGAGCCTG	5890	False	NA	NA	False	AATAAA	-21	NA	120131716	120130447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120131110_120131377
ENSMUSG00000046971.8_8	chr2	-	2268	12	ISM	ENSMUSG00000046971.8	ENSMUST00000054651.8	3116	20	6054	1	4266	-1	3prime_fragment	FALSE	canonical	0	0	junction_10	5.34897843031114	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGTGTCACTGAGCCTG	NA	False	NA	NA	False	AATAAA	-21	NA	120138592	120130447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133547_120133656_120133733_120133872_120134056_120134172_120135033_120135257_120135482_120135620_120137705_120137845_120138043_120138082_120138454
ENSMUSG00000046982.12_0	chr18	-	2988	1	ISM	ENSMUSG00000046982.12	ENSMUST00000060303.10	5656	2	71783	7	70454	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGATTGTCGTGGCTGT	4652	False	NA	-2	True	AATAAA	-22	NA	84032746	84029758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_84029800_84032700
ENSMUSG00000046982.12_1	chr18	-	5015	2	FSM	ENSMUSG00000046982.12	ENSMUST00000060303.10	5656	2	634	7	634	-7	multi-exon	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGATTGTCGTGGCTGT	NA	False	NA	-2	True	AATAAA	-22	NA	84103895	84029758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_84034367_84103488
ENSMUSG00000046985.12_0	chr5	-	3520	14	FSM	ENSMUSG00000046985.12	ENSMUST00000055128.12	3513	14	-17	10	-13	-5	multi-exon	FALSE	canonical	3	70	junction_1	11.6390487421138	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGTCACTGAATTTCT	NA	False	NA	-5	True	AATAAA	-22	NA	44383981	44332505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_44334525_44336202_44336364_44340039_44340117_44341922_44341992_44342296_44342357_44343573_44343684_44345960_44346042_44349422_44349493_44349708_44349807_44350528_44350665_44351589_44351753_44361551_44361671_44375445_44375577_44383755
ENSMUSG00000046985.12_1	chr5	-	1731	1	ISM	ENSMUSG00000046985.12	ENSMUST00000055128.12	3513	14	49728	10	5932	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGTCACTGAATTTCT	NA	False	NA	-5	True	AATAAA	-22	NA	44334236	44332505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_44332500_44334200
ENSMUSG00000046985.12_15	chr5	-	1402	2	FSM	ENSMUSG00000105519.2_ENSMUSG00000046985.12	ENSMUST00000196151.2	619	2	-1	-782	-1	782	multi-exon	FALSE	canonical	3	90	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	AAAAAG	-9	NA	44383969	44374388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_44375577_44383755
ENSMUSG00000046985.12_2	chr5	-	3378	13	NIC	ENSMUSG00000046985.12	novel	3513	14	NA	NA	0	-6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_11	24.4828454682503	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAGGTCACTGAATTTC	NA	False	NA	-6	True	AATAAA	-21	NA	44383959	44332506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_44334525_44336202_44336364_44340039_44340117_44341922_44341992_44342296_44342357_44343573_44343684_44345960_44346042_44349422_44349493_44349708_44349807_44350528_44350665_44351589_44351753_44375445_44375577_44383755
ENSMUSG00000046985.12_5	chr5	-	3565	15	NIC	ENSMUSG00000046985.12	novel	3513	14	NA	NA	-1	-5	combination_of_known_junctions	FALSE	canonical	3	7	junction_11	29.1194759147726	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGTCACTGAATTTCT	NA	False	NA	-5	True	AATAAA	-22	NA	44383960	44332505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_44334525_44336202_44336364_44340039_44340117_44341922_44341992_44342296_44342357_44343573_44343684_44345960_44346042_44349422_44349493_44349708_44349807_44350528_44350665_44351589_44351753_44356654_44356721_44361551_44361671_44375445_44375577_44383755
ENSMUSG00000046985.12_9	chr5	-	5316	13	NIC	ENSMUSG00000046985.12	novel	3513	14	NA	NA	-3	-5	intron_retention	FALSE	canonical	3	70	junction_1	11.6213405231735	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGTCACTGAATTTCT	NA	False	NA	-5	True	AATAAA	-22	NA	44383971	44332505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_44334525_44336202_44336364_44340039_44341992_44342296_44342357_44343573_44343684_44345960_44346042_44349422_44349493_44349708_44349807_44350528_44350665_44351589_44351753_44361551_44361671_44375445_44375577_44383755
ENSMUSG00000046994.10_0	chr1	+	2829	1	FSM	ENSMUSG00000046994.10	ENSMUST00000061334.10	11294	1	43	8422	43	-8422	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTCTTTACAGCTGTTTG	NA	False	NA	15	True	ATTAAA	-15	NA	55276378	55279207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_55276400_55279200
ENSMUSG00000046994.10_1	chr1	+	1595	1	FSM	ENSMUSG00000046994.10	ENSMUST00000061334.10	11294	1	5266	4433	5266	-4433	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACATGTTGAAGATGTT	NA	False	NA	15	True	NA	NA	NA	55281601	55283196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_55281600_55283200
ENSMUSG00000046997.6_1	chr9	-	2663	3	FSM	ENSMUSG00000046997.6	ENSMUST00000055433.5	2720	3	56	1	-23	-1	multi-exon	FALSE	canonical	1	1	junction_2	0.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTGTGTAAAGTGCTCT	NA	False	NA	NA	False	AATAAA	-21	NA	96900840	96825535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_96826758_96877627_96878475_96900246
ENSMUSG00000046999.3_0	chr3	+	2763	1	FSM	ENSMUSG00000046999.3	ENSMUST00000054551.3	2578	1	-200	15	-200	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAGTAAACTATTTCT	NA	False	NA	NA	False	ATTAAA	-29	NA	68776718	68779481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_68776700_68779500
ENSMUSG00000047003.16_0	chr15	+	3500	3	FSM	ENSMUSG00000047003.16	ENSMUST00000161785.8	3540	3	33	7	-14	-7	multi-exon	FALSE	canonical	3	54	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGCTTCCTGTGCTCTG	NA	False	NA	10	True	AGTAAA	-10	NA	75488560	75497142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_75488670_75489892_75491541_75495399
ENSMUSG00000047003.16_12	chr15	+	3250	1	ISM	ENSMUSG00000047003.16	ENSMUST00000054555.10	8270	3	9875	19	4848	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATATAAAAAAATGAAAAAAG	NA	False	NA	NA	False	AATAAA	-8	NA	75498407	75501657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_75498400_75501700
ENSMUSG00000047003.16_3	chr15	+	2912	2	ISM	ENSMUSG00000047003.16	ENSMUST00000161785.8	3540	3	1844	7	1797	-7	3prime_fragment	FALSE	canonical	3	54	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGCTTCCTGTGCTCTG	NA	False	NA	10	True	AGTAAA	-10	NA	75490371	75497142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_75491541_75495399
ENSMUSG00000047003.16_4	chr15	+	3706	3	FSM	ENSMUSG00000047003.16	ENSMUST00000054555.10	8270	3	30	4534	-12	-7	multi-exon	FALSE	canonical	2	8	junction_1	23	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGCTTCCTGTGCTCTG	NA	False	NA	10	True	AGTAAA	-10	NA	75488562	75497142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_75488878_75489892_75491541_75495399
ENSMUSG00000047013.16_0	chr6	-	2234	1	ISM	ENSMUSG00000047013.16	ENSMUST00000159062.8	6505	13	31183	4	31047	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTGGTGTGTGGCCAA	3179	False	NA	NA	False	AATAAA	-15	NA	85448793	85446559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_85446600_85448800
ENSMUSG00000047022.19_0	chr12	+	2083	11	FSM	ENSMUSG00000047022.19	ENSMUST00000123498.8	2117	11	25	9	-20	-9	multi-exon	FALSE	canonical	3	41	junction_10	14.6659469520382	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATAAATATTGTTGGTA	NA	False	NA	NA	False	AATAAA	-22	NA	57277256	57543976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
ENSMUSG00000047022.19_1	chr12	+	1918	10	NIC	ENSMUSG00000047022.19	novel	2117	11	NA	NA	-4	-15	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	19.7652894404981	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACTTATACATAAATATTG	NA	False	NA	NA	False	AATAAA	-16	NA	57277208	57543970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_57277398_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
ENSMUSG00000047022.19_10	chr12	+	1035	5	FSM	ENSMUSG00000047022.19	ENSMUST00000148418.8	1168	5	45	88	-10	-88	multi-exon	FALSE	canonical	3	68	junction_4	7.69740215917033	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACTCCTTAATCTGTTTA	NA	False	NA	NA	False	NA	NA	NA	57277266	57372773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309
ENSMUSG00000047022.19_15	chr12	+	1223	5	ISM	ENSMUSG00000047022.19	ENSMUST00000130447.4	2171	12	50160	80	-96	-80	3prime_fragment	FALSE	canonical	3	41	junction_4	6.75925291729789	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACATGATTTTTGTTTCA	NA	False	NA	NA	False	ATTAAA	-42	NA	57379118	57543905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
ENSMUSG00000047022.19_2	chr12	+	1647	4	FSM	ENSMUSG00000047022.19	ENSMUST00000153755.8	1856	4	-2	211	-2	-211	multi-exon	FALSE	canonical	3	69	junction_1	7.34846922834953	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACTGGATGACAACTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	57277210	57355270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144
ENSMUSG00000047022.19_5	chr12	+	1363	8	ISM	ENSMUSG00000047022.19	ENSMUST00000145003.8	1424	10	0	92684	0	-2045	5prime_fragment	FALSE	canonical	3	52	junction_6	11.4196393666922	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAATCATCAGCCGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	57277231	57411334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912
ENSMUSG00000047022.19_6	chr12	+	1974	11	NIC	ENSMUSG00000047022.19	novel	2117	11	NA	NA	11	24	combination_of_known_splicesites	FALSE	canonical	3	14	junction_10	19.5642531163344	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACATGTGGGTCGAATGT	NA	False	NA	NA	False	AATAAA	-11	NA	57277242	57513851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57513241
ENSMUSG00000047022.19_8	chr12	+	1382	10	FSM	ENSMUSG00000047022.19	ENSMUST00000145003.8	1424	10	40	2	-5	-2	multi-exon	FALSE	canonical	3	42	junction_9	13.9602610609146	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAGGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57277271	57504016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738
ENSMUSG00000047030.16_0	chr2	-	3522	2	FSM	ENSMUSG00000047030.16	ENSMUST00000147051.2	733	2	329	-3118	329	31	multi-exon	FALSE	canonical	3	54	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAGTGTTCATGGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	167327421	167323321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_167326500_167327077
ENSMUSG00000047030.16_1	chr2	-	4284	2	NIC	ENSMUSG00000047030.16	novel	4012	3	NA	NA	-5	31	intron_retention	FALSE	canonical	3	52	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAGTGTTCATGGTGT	4619	False	NA	NA	False	AATAAA	-16	NA	167334770	167323321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_167327514_167334678
ENSMUSG00000047030.16_2	chr2	-	3719	3	FSM	ENSMUSG00000047030.16	ENSMUST00000057627.16	4012	3	24	269	9	31	multi-exon	FALSE	canonical	3	52	junction_2	1	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAGTGTTCATGGTGT	4606	False	NA	NA	False	AATAAA	-16	NA	167334783	167323321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_167326500_167327077_167327514_167334678
ENSMUSG00000047030.16_3	chr2	-	1674	1	ISM	ENSMUSG00000047030.16	ENSMUST00000057627.16	4012	3	9812	269	2755	31	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAGTGTTCATGGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	167324995	167323321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_167323300_167325000
ENSMUSG00000047030.16_5	chr2	-	3708	3	NNC	ENSMUSG00000047030.16	novel	4012	3	NA	NA	-11	31	intron_retention	FALSE	canonical	1	2	junction_2	26	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAGTGTTCATGGTGT	4613	False	NA	NA	False	AATAAA	-16	NA	167334776	167323321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_167326500_167327077_167327514_167334682
ENSMUSG00000047030.16_7	chr2	-	3899	4	NIC	ENSMUSG00000047030.16	novel	1531	4	NA	NA	1	30	intron_retention	FALSE	canonical	1	1	junction_2	24.9844396019247	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGAAGTGTTCATGGTG	4625	False	NA	NA	False	AATAAA	-15	NA	167334764	167323322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_167326500_167327077_167327514_167331088_167331289_167334678
ENSMUSG00000047036.9_10	chr9	-	6148	7	NIC	ENSMUSG00000047036.9	novel	6189	7	NA	NA	12	-44	combination_of_known_junctions	FALSE	canonical	3	35	junction_6	54.6310859818433	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGTAAATAAAAATAAACAAA	NA	False	NA	-38	True	NA	NA	NA	122695038	122678018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_122683054_122683771_122683883_122685763_122685891_122686131_122686227_122686534_122686704_122690773_122691325_122694978
ENSMUSG00000047036.9_11	chr9	-	6236	7	NIC	ENSMUSG00000047036.9	novel	6189	7	NA	NA	12	-41	combination_of_known_junctions	FALSE	canonical	3	44	junction_3	42.9434382518318	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATAAACAAAAAT	NA	False	NA	-35	True	NA	NA	NA	122695038	122678015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_122683054_122683771_122683883_122685763_122685891_122686131_122686227_122686534_122686704_122690773_122691410_122694978
ENSMUSG00000047036.9_14	chr9	-	6110	7	FSM	ENSMUSG00000047036.9	ENSMUST00000216063.2	6189	7	32	47	11	-47	multi-exon	FALSE	canonical	3	35	junction_6	50.4669859082813	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGTAAATAAAAATAAAC	NA	False	NA	-41	True	NA	NA	NA	122695039	122678021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_122683054_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773_122691325_122694978
ENSMUSG00000047036.9_16	chr9	-	5472	2	FSM	ENSMUSG00000047036.9	ENSMUST00000216243.2	1064	2	240	-4648	240	-41	multi-exon	FALSE	canonical	3	188	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATAAACAAAAAT	NA	False	NA	-35	True	NA	NA	NA	122684205	122678015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_122683054_122683771
ENSMUSG00000047036.9_23	chr9	-	5833	6	FSM	ENSMUSG00000047036.9	ENSMUST00000056467.8	2961	6	91	-2963	91	-41	multi-exon	FALSE	canonical	3	67	junction_3	39.2356980312572	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATAAACAAAAAT	NA	False	NA	-35	True	NA	NA	NA	122691102	122678015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_122683054_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773
ENSMUSG00000047036.9_6	chr9	-	6197	7	NIC	ENSMUSG00000047036.9	novel	6189	7	NA	NA	15	-41	combination_of_known_junctions	FALSE	canonical	3	67	junction_3	36.0262250157977	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATAAACAAAAAT	NA	False	NA	-35	True	NA	NA	NA	122695035	122678015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_122683054_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773_122691410_122694978
ENSMUSG00000047036.9_7	chr9	-	3011	1	ISM	ENSMUSG00000047036.9	ENSMUST00000216063.2	6189	7	14045	41	3419	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATAAACAAAAAT	NA	False	NA	-35	True	NA	NA	NA	122681026	122678015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_122678000_122681000
ENSMUSG00000047036.9_8	chr9	-	6481	6	NIC	ENSMUSG00000047036.9	novel	6189	7	NA	NA	12	-37	intron_retention	FALSE	canonical	3	118	junction_3	25.3929123969662	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAACAAAAATTAAT	NA	False	NA	-31	True	AGTAAA	-2	NA	122695038	122678011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_122683054_122683771_122683883_122685763_122686227_122686534_122686704_122690773_122691410_122694978
ENSMUSG00000047037.6_1	chr7	-	1895	5	FSM	ENSMUSG00000047037.6	ENSMUST00000052204.6	3183	5	370	918	370	-918	multi-exon	FALSE	canonical	3	26	junction_2	3.34477204006491	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTAAGGTTGTTACATTA	NA	False	NA	NA	False	AATAAA	-13	NA	55669332	55628232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_55629652_55635151_55635313_55646181_55646273_55647263_55647312_55669156
ENSMUSG00000047037.6_2	chr7	-	867	1	ISM	ENSMUSG00000047037.6	ENSMUST00000052204.6	3183	5	40603	918	40603	-918	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTAAGGTTGTTACATTA	NA	False	NA	NA	False	AATAAA	-13	NA	55629099	55628232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_55628200_55629100
ENSMUSG00000047040.10_1	chr11	+	1349	2	FSM	ENSMUSG00000047040.10	ENSMUST00000062172.6	1242	2	-107	0	-15	0	multi-exon	FALSE	canonical	3	7	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCACGGTCTTATTTA	NA	False	NA	NA	False	AATAAA	-10	NA	96820112	96826469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96820336_96825343
ENSMUSG00000047040.10_3	chr11	+	1400	3	FSM	ENSMUSG00000047040.10	ENSMUST00000107636.4	3545	3	-42	2187	-20	0	multi-exon	FALSE	canonical	1	1	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCACGGTCTTATTTA	NA	False	NA	NA	False	AATAAA	-10	NA	96820107	96826469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96820336_96822336_96822380_96825340
ENSMUSG00000047044.8_0	chr19	+	1663	2	FSM	ENSMUSG00000047044.8	ENSMUST00000062753.3	1677	2	14	0	14	0	multi-exon	FALSE	canonical	3	347	junction_1	0	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTATGTATCAGTGACTAA	9328	False	NA	26	True	AATAAA	-19	NA	18690570	18695792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_18691024_18694582
ENSMUSG00000047044.8_1	chr19	+	1652	2	FSM	ENSMUSG00000047044.8	ENSMUST00000055792.8	1631	2	-21	0	-21	0	multi-exon	FALSE	canonical	3	77	junction_1	0	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTATGTATCAGTGACTAA	9336	False	NA	26	True	AATAAA	-19	NA	18690578	18695792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_18691024_18694585
ENSMUSG00000047044.8_2	chr19	+	952	1	ISM	ENSMUSG00000047044.8	ENSMUST00000062753.3	1677	2	4284	0	4241	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTATGTATCAGTGACTAA	NA	False	NA	26	True	AATAAA	-19	NA	18694840	18695792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_18694800_18695800
ENSMUSG00000047045.18_1	chrX	+	4621	6	ISM	ENSMUSG00000047045.18	ENSMUST00000112889.8	1742	7	10	5127	1	129	5prime_fragment	FALSE	canonical	3	60	junction_1	22.0599184042009	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTCAGGAGTCCTGGCC	NA	False	NA	1	True	ATTAAA	-10	NA	141464411	141621363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_141464553_141535035_141535086_141553962_141554030_141588985_141589065_141615496_141615598_141617180
ENSMUSG00000047045.18_10	chrX	+	4489	4	NIC	ENSMUSG00000047045.18	novel	4443	5	NA	NA	1	117	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	54.7073019704764	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGATTTATGAGAATTCA	NA	False	NA	-11	True	NA	NA	NA	141464414	141621351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_141464553_141588985_141589065_141615496_141615598_141617180
ENSMUSG00000047045.18_14	chrX	+	5187	7	FSM	ENSMUSG00000047045.18	ENSMUST00000112896.9	5224	7	166	-129	166	129	multi-exon	FALSE	canonical	2	8	junction_1	44.5474154381848	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTCAGGAGTCCTGGCC	NA	False	NA	1	True	ATTAAA	-10	NA	141464887	141621363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_141464936_141465286_141465946_141535035_141535086_141553962_141554030_141588985_141589065_141615496_141615598_141617180
ENSMUSG00000047045.18_17	chrX	+	2719	1	Genic_Genomic	ENSMUSG00000047045.18	novel	NA	NA	NA	NA	9908	129	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTCAGGAGTCCTGGCC	NA	False	NA	1	True	ATTAAA	-10	NA	141618644	141621363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_141618600_141621400
ENSMUSG00000047045.18_3	chrX	+	5278	7	FSM	ENSMUSG00000047045.18	ENSMUST00000087333.9	5149	7	-3	-126	0	126	multi-exon	FALSE	canonical	3	33	junction_2	37.6592913133296	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGAATTCAGGAGTCCTG	NA	False	NA	-2	True	ATTAAA	-7	NA	141464410	141621360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_141464553_141465286_141465946_141535035_141535086_141553962_141554030_141588985_141589065_141615496_141615598_141617180
ENSMUSG00000047045.18_6	chrX	+	4569	5	FSM	ENSMUSG00000047045.18	ENSMUST00000101198.9	4443	5	-7	-119	2	119	multi-exon	FALSE	canonical	0	0	junction_1	49.9218138692896	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATGAGAATTCAGG	NA	False	NA	-9	True	NA	NA	NA	141464403	141621353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_141464553_141553962_141554030_141588985_141589065_141615496_141615598_141617180
ENSMUSG00000047067.8_0	chr1	+	1282	2	FSM	ENSMUSG00000047067.8	ENSMUST00000060913.8	1314	2	25	7	25	-7	multi-exon	FALSE	canonical	3	9	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAACCCCCGAGTTGCT	2880	False	NA	NA	False	AATAAA	-7	NA	92834727	92836150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_92835146_92835286
ENSMUSG00000047084.9_0	chr7	+	1310	3	FSM	ENSMUSG00000047084.9	ENSMUST00000117989.2	1317	3	6	1	1	-1	multi-exon	FALSE	canonical	3	448	junction_2	14	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGTTGCTTGGTTCTC	NA	False	NA	12	True	AATAAA	-12	NA	79910968	79915121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79911172_79911568_79911680_79914125
ENSMUSG00000047084.9_1	chr7	+	1699	2	FSM	ENSMUSG00000047084.9	ENSMUST00000138005.2	1709	2	9	1	9	-1	multi-exon	FALSE	canonical	3	448	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGTTGCTTGGTTCTC	NA	False	NA	12	True	AATAAA	-12	NA	79910976	79915121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79911680_79914125
ENSMUSG00000047084.9_6	chr7	+	414	1	ISM	ENSMUSG00000047084.9	ENSMUST00000117989.2	1317	3	3746	0	3741	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTGCTTGGTTCTCT	NA	False	NA	13	True	AATAAA	-13	NA	79914708	79915122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79914700_79915100
ENSMUSG00000047090.14_0	chr10	-	2204	4	ISM	ENSMUSG00000047090.14	ENSMUST00000051011.14	2335	5	1013	-7	360	7	3prime_fragment	FALSE	canonical	3	22	junction_1	6.37704215656966	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCGCCTCTACTGTTGC	6750	False	NA	0	True	AATAAA	-25	NA	128639226	128635897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128637099_128637219_128637381_128637804_128638387_128638966
ENSMUSG00000047090.14_10	chr10	-	2420	5	FSM	ENSMUSG00000047090.14	ENSMUST00000051011.14	2335	5	-93	8	-93	-8	multi-exon	FALSE	canonical	3	13	junction_4	8.20060973342836	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCACCTGGGGAGATG	5644	False	NA	-15	True	AATAAA	-10	NA	128640332	128635912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128637099_128637219_128637381_128637804_128638387_128638966_128639227_128640101
ENSMUSG00000047090.14_11	chr10	-	4637	3	FSM	ENSMUSG00000047090.14	ENSMUST00000152966.2	3156	3	-1413	-68	-1004	-1	multi-exon	FALSE	canonical	3	22	junction_1	7	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGGGAGATGCGCCTCT	4733	False	NA	-8	True	AATAAA	-17	NA	128641243	128635905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128637099_128637219_128638387_128638966
ENSMUSG00000047090.14_14	chr10	-	1688	3	ISM	ENSMUSG00000047090.14	ENSMUST00000051011.14	2335	5	2094	8	1441	-8	3prime_fragment	FALSE	canonical	3	22	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCACCTGGGGAGATG	7831	False	NA	-15	True	AATAAA	-10	NA	128638145	128635912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128637099_128637219_128637381_128637804
ENSMUSG00000047090.14_2	chr10	-	2603	5	NNC	ENSMUSG00000047090.14	novel	2335	5	NA	NA	-1001	-3	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	9.90896059130321	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTGGGGAGATGCGCCT	4736	False	NA	-10	True	AATAAA	-15	NA	128641240	128635907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_128637099_128637219_128637381_128637804_128638387_128638966_128639227_128640831
ENSMUSG00000047090.14_3	chr10	-	877	1	ISM	ENSMUSG00000047090.14	ENSMUST00000051011.14	2335	5	3455	3	2802	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTGGGGAGATGCGCCT	9192	False	NA	-10	True	AATAAA	-15	NA	128636784	128635907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128635900_128636800
ENSMUSG00000047090.14_7	chr10	-	2900	5	NNC	ENSMUSG00000047090.14	novel	2335	5	NA	NA	-1000	-8	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	11.3880419739304	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCACCTGGGGAGATG	4737	False	NA	-15	True	AATAAA	-10	NA	128641239	128635912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_128637099_128637219_128637381_128637804_128638387_128638966_128639227_128640528
ENSMUSG00000047090.14_8	chr10	-	2897	2	ISM	ENSMUSG00000047090.14	ENSMUST00000152966.2	3156	3	900	-61	656	-8	3prime_fragment	FALSE	canonical	3	22	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCACCTGGGGAGATG	7046	False	NA	-15	True	AATAAA	-10	NA	128638930	128635912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128637099_128637219
ENSMUSG00000047098.19_1	chr14	+	3401	21	FSM	ENSMUSG00000047098.19	ENSMUST00000019443.15	3485	21	61	23	25	0	multi-exon	FALSE	canonical	3	102	junction_6	30.6031044176894	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTTCTTGGTGGTCCTTC	4235	False	NA	15	True	AATAAA	-18	NA	55829225	55841127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55829530_55829625_55829773_55829917_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832926_55833218_55833463_55833713_55833798_55833985_55834108_55834316_55836094_55836269_55836360_55836460_55836552_55836643_55838505_55838621_55838735_55838855_55839098_55839213_55839337_55839396_55840059_55840157_55840712_55840882_55840988
ENSMUSG00000047098.19_3	chr14	+	3392	21	NIC	ENSMUSG00000047098.19	novel	3485	21	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	45.0271029492238	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTTCTTGGTGGTCCTTC	4241	False	NA	15	True	AATAAA	-18	NA	55829231	55841127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55829530_55829625_55829773_55829917_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832929_55833218_55833463_55833713_55833798_55833985_55834108_55834316_55836094_55836269_55836360_55836460_55836552_55836643_55838505_55838621_55838735_55838855_55839098_55839213_55839337_55839396_55840059_55840157_55840712_55840882_55840988
ENSMUSG00000047115.16_1	chr6	+	1291	6	FSM	ENSMUSG00000047115.16	ENSMUST00000121903.2	1304	6	6	7	6	0	multi-exon	FALSE	canonical	3	8	junction_5	14.4360659460949	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAATACATAGGGTCAG	NA	False	NA	NA	False	ATTAAA	-7	NA	49344762	49366207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49365750
ENSMUSG00000047115.16_4	chr6	+	1387	7	FSM	ENSMUSG00000047115.16	ENSMUST00000060561.15	2730	7	77	1266	-7	0	multi-exon	FALSE	canonical	3	30	junction_5	5.75663867972351	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAATACATAGGGTCAG	NA	False	NA	NA	False	ATTAAA	-7	NA	49344749	49366207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49362306_49362390_49365750
ENSMUSG00000047115.16_5	chr6	+	1392	7	NNC	ENSMUSG00000047115.16	novel	2730	7	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	11.0867789130417	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAATACATAGGGTCAG	NA	False	NA	NA	False	ATTAAA	-7	NA	49344741	49366207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49362309_49362390_49365750
ENSMUSG00000047117.14_0	chr13	-	4261	9	NIC	ENSMUSG00000047117.14	novel	3003	14	NA	NA	-126	1313	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	2.6809513236909	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTGTTTAAATAAAAATAA	NA	False	NA	NA	False	ATTAAA	-12	NA	96582651	96551328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_96554409_96556172_96556305_96557227_96557430_96561240_96561337_96569809_96569909_96572380_96572480_96578064_96578164_96580786_96580886_96582296
ENSMUSG00000047117.14_1	chr13	-	2086	10	ISM	ENSMUSG00000047117.14	ENSMUST00000239137.2	3003	14	25017	649	-126	0	3prime_fragment	FALSE	canonical	0	0	junction_3	2.67129228448251	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTTGTTCGTTGTATC	NA	False	NA	NA	False	NA	NA	NA	96582651	96553602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_96554409_96556172_96556305_96557227_96557430_96561240_96561337_96566293_96566393_96569809_96569909_96572380_96572480_96578064_96578164_96580786_96580886_96582296
ENSMUSG00000047123.9_0	chr17	-	2177	1	ISM	ENSMUSG00000047123.9	ENSMUST00000058136.9	2992	2	5140	151	5140	-151	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCATAAGCCAGCGTCACC	5953	False	NA	NA	False	AATAAA	-15	NA	56578646	56576469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56576500_56578600
ENSMUSG00000047123.9_1	chr17	-	2803	2	FSM	ENSMUSG00000047123.9	ENSMUST00000058136.9	2992	2	44	145	44	-145	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCAGCGTCACCACACTC	857	False	NA	NA	False	AATAAA	-21	NA	56583742	56576463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56579218_56583693
ENSMUSG00000047126.18_2	chr11	-	6166	32	FSM	ENSMUSG00000047126.18	ENSMUST00000103186.11	6519	32	45	308	-19	-4	multi-exon	TRUE	canonical	3	813	junction_25	122.673691341487	1739	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACATGTAGAATTGCA	NA	False	NA	-11	True	AATAAA	-15	NA	86648346	86585484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
ENSMUSG00000047139.10_0	chr10	+	1979	2	NIC	ENSMUSG00000047139.10	novel	574	2	NA	NA	201	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGCAGTCTGTTGAAT	NA	False	NA	6	True	AATAAA	-15	NA	43454480	43460257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_43454802_43458599
ENSMUSG00000047139.10_1	chr10	+	1814	2	FSM	ENSMUSG00000047139.10	ENSMUST00000058714.10	1816	2	-2	4	-2	-4	multi-exon	FALSE	canonical	3	74	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGCAGTCTGTTGAAT	NA	False	NA	6	True	AATAAA	-15	NA	43455162	43460257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_43455319_43458599
ENSMUSG00000047139.10_2	chr10	+	1336	1	ISM	ENSMUSG00000047139.10	ENSMUST00000058714.10	1816	2	3756	5	2990	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGAGCAGTCTGTTGAA	NA	False	NA	5	True	AATAAA	-14	NA	43458920	43460256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_43458900_43460300
ENSMUSG00000047141.6_0	chr16	-	5200	9	FSM	ENSMUSG00000047141.6	ENSMUST00000207826.2	6261	9	-63	1124	-63	-1120	multi-exon	FALSE	canonical	3	157	junction_4	10.7812047100498	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAATCCTGTTTGGAA	NA	False	NA	NA	False	ATTAAA	-13	NA	64672078	64601833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_64603640_64604869_64607166_64608667_64608810_64611449_64611590_64612131_64612335_64614783_64614920_64634987_64635070_64650826_64650973_64671829
ENSMUSG00000047141.6_1	chr16	-	2615	1	ISM	ENSMUSG00000047141.6	ENSMUST00000207826.2	6261	9	68687	4	3356	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGCAAGTGTTCAGTTT	NA	False	NA	-7	True	AATAAA	-16	NA	64603328	64600713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_64600700_64603300
ENSMUSG00000047141.6_13	chr16	-	5040	8	NIC	ENSMUSG00000047141.6	novel	6261	9	NA	NA	-60	-2507	intron_retention	FALSE	canonical	3	157	junction_3	6.45865974597561	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATGGAATTTGTTTTC	NA	False	NA	-9	True	AATAAA	-15	NA	64672075	64603220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_64607166_64608667_64608810_64611449_64611590_64612131_64612335_64614783_64614920_64634987_64635070_64650826_64650973_64671829
ENSMUSG00000047141.6_2	chr16	-	4382	2	FSM	ENSMUSG00000047141.6	ENSMUST00000052588.5	4741	2	357	2	357	-2	multi-exon	FALSE	canonical	3	193	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATGCAAGTGTTCAGT	NA	False	NA	-9	True	AATAAA	-14	NA	64606327	64600715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_64603640_64604869
ENSMUSG00000047143.4_2	chr4	+	2394	3	FSM	ENSMUSG00000047143.4	ENSMUST00000061187.4	2922	3	-74	602	-74	-602	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATCTCTTGGCACTGAC	NA	False	NA	NA	False	TATAAA	-11	NA	109835175	109840282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_109835534_109837051_109837607_109838801
ENSMUSG00000047146.18_1	chr10	-	3771	1	ISM	ENSMUSG00000047146.18	ENSMUST00000050826.14	13986	11	71670	4	6195	3	mono-exon	FALSE	NA	NA	NA	NA	NA	444	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACCTGGTAGTCTATTTT	7091	False	NA	-3	True	AATAAA	-17	NA	62644123	62640352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_62640400_62644100
ENSMUSG00000047146.18_19	chr10	-	6734	13	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	-82	350	combination_of_known_junctions	FALSE	canonical	3	63	junction_12	54.9749311555327	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACTTAAAGGAACATCT	2909	False	NA	-8	True	AATAAA	-15	NA	62723185	62648050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62722950
ENSMUSG00000047146.18_3	chr10	-	6665	13	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	126	350	combination_of_known_junctions	FALSE	canonical	3	87	junction_3	53.2569765904483	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACTTAAAGGAACATCT	NA	False	NA	-8	True	AATAAA	-15	NA	62728639	62648050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62728473
ENSMUSG00000047153.5_1	chr14	+	5844	8	FSM	ENSMUSG00000047153.5	ENSMUST00000022831.5	3898	8	42	-1988	15	-6	multi-exon	FALSE	canonical	3	63	junction_2	8.07111250961459	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAATAGTATGGTGGCTA	NA	False	NA	0	True	NA	NA	NA	56122445	56136226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_56122600_56123230_56123449_56123948_56125076_56125170_56125302_56125377_56125475_56131448_56131557_56131743_56131846_56132319
ENSMUSG00000047153.5_15	chr14	+	4968	6	ISM	ENSMUSG00000047153.5	ENSMUST00000022831.5	3898	8	2049	-1988	1979	-6	3prime_fragment	FALSE	canonical	3	67	junction_5	6.74091981854109	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAATAGTATGGTGGCTA	NA	False	NA	0	True	NA	NA	NA	56124452	56136226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56125076_56125170_56125302_56125377_56125475_56131448_56131557_56131743_56131846_56132319
ENSMUSG00000047153.5_19	chr14	+	2948	1	ISM	ENSMUSG00000047153.5	ENSMUST00000228462.2	5882	8	10809	2	10809	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGTATGGTGGCTACTAC	NA	False	NA	4	True	NA	NA	NA	56133282	56136230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56133300_56136200
ENSMUSG00000047153.5_3	chr14	+	6357	7	NIC	ENSMUSG00000047153.5	novel	4075	8	NA	NA	2	-6	intron_retention	FALSE	canonical	3	67	junction_6	6.15539510420646	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAATAGTATGGTGGCTA	NA	False	NA	0	True	NA	NA	NA	56122432	56136226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_56122600_56123230_56125076_56125170_56125302_56125377_56125475_56131448_56131557_56131743_56131846_56132319
ENSMUSG00000047187.10_0	chr4	+	1950	8	FSM	ENSMUSG00000047187.10	ENSMUST00000060232.8	2133	8	3	180	3	-180	multi-exon	FALSE	canonical	3	1070	junction_6	76.6414924655499	841	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAGTTTTAGTTGTTTA	-14	True	NA	20	True	AATAAA	-30	NA	8535646	8607598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_8535909_8561151_8561224_8572525_8572594_8577954_8578038_8578470_8578564_8582381_8582494_8604373_8604443_8606407
ENSMUSG00000047193.17_5	chr9	-	3871	29	ISM	ENSMUSG00000047193.17	ENSMUST00000048417.13	13972	89	125603	522	60100	279	3prime_fragment	TRUE	canonical	2	3	junction_17	4.00430253296504	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATTAAATGATATAATACA	NA	False	NA	NA	False	ATTAAA	-22	NA	7051443	6929024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_6929624_6935238_6935356_6940542_6940625_6941594_6941705_6955906_6955997_6967079_6967290_6983389_6983507_6992523_6992629_6993937_6994147_6996863_6996940_7001340_7001497_7002555_7002667_7005489_7005616_7006715_7006877_7009970_7010044_7011172_7011305_7014138_7014217_7015473_7015525_7016729_7016796_7023310_7023401_7031640_7031785_7034989_7035125_7035599_7035720_7037652_7037817_7041601_7041726_7044329_7044429_7049082_7049193_7050341_7050484_7051369
ENSMUSG00000047205.13_0	chr11	+	4580	2	FSM	ENSMUSG00000047205.13	ENSMUST00000055931.5	4632	2	13	39	13	-39	multi-exon	FALSE	canonical	2	4	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTTGTTTGTTTTAAAT	5258	False	NA	NA	False	AATATA	-13	NA	3845252	3851257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3845518_3846942
ENSMUSG00000047205.13_2	chr11	+	3642	3	NNC	ENSMUSG00000047205.13	novel	4632	2	NA	NA	-13	-442	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAGCCTGTGACCTATGA	5232	False	NA	NA	False	AATAAA	-14	NA	3845226	3850854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_3845518_3846942_3847771_3848331
ENSMUSG00000047213.15_0	chr3	+	5096	6	FSM	ENSMUSG00000047213.15	ENSMUST00000108346.5	4929	6	1	-168	1	-14	multi-exon	FALSE	canonical	3	147	junction_4	138.147167904377	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTCACTCTAATTGGTG	NA	False	NA	0	True	AATAAA	-2	NA	16237400	16271187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257350_16257384_16257989_16259589_16268118
ENSMUSG00000047213.15_1	chr3	+	4410	5	FSM	ENSMUSG00000047213.15	ENSMUST00000108345.9	5102	5	25	667	1	-485	multi-exon	FALSE	canonical	3	260	junction_3	82.6211232070831	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTCTTGCTCAGTGTTT	NA	False	NA	NA	False	AATAAA	-40	NA	16237400	16270534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257989_16259589_16268118
ENSMUSG00000047213.15_3	chr3	+	5218	6	FSM	ENSMUSG00000047213.15	ENSMUST00000191774.6	3196	6	2	-2024	2	-7	multi-exon	FALSE	canonical	3	57	junction_2	175.937943605125	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTAATTGGTGTTCTTTC	NA	False	NA	7	True	AATAAA	-9	NA	16237401	16271194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_16237685_16238085_16238111_16241130_16241280_16243641_16243728_16257989_16259589_16268118
ENSMUSG00000047213.15_38	chr3	+	4097	2	ISM	ENSMUSG00000047213.15	ENSMUST00000108345.9	5102	5	21192	7	21168	-7	3prime_fragment	FALSE	canonical	3	484	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTAATTGGTGTTCTTTC	NA	False	NA	7	True	AATAAA	-9	NA	16258567	16271194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_16259589_16268118
ENSMUSG00000047213.15_4	chr3	+	5047	4	NIC	ENSMUSG00000047213.15	novel	5102	5	NA	NA	-1	-7	combination_of_known_splicesites	FALSE	canonical	2	12	junction_1	192.77620876723	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTAATTGGTGTTCTTTC	NA	False	NA	7	True	AATAAA	-9	NA	16237398	16271194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_16237685_16243641_16243728_16257989_16259589_16268118
ENSMUSG00000047213.15_42	chr3	+	1990	1	ISM	ENSMUSG00000047213.15	ENSMUST00000108345.9	5102	5	31833	3	31809	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTGGTGTTCTTTCCTTT	NA	False	NA	11	True	AATAAA	-13	NA	16269208	16271198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_16269200_16271200
ENSMUSG00000047213.15_5	chr3	+	4575	7	NIC	ENSMUSG00000047213.15	novel	4929	6	NA	NA	0	-503	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	168.232395479851	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACATTATTGGTCCTGTG	NA	False	NA	NA	False	AATAAA	-22	NA	16237399	16270516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_16237685_16238085_16238111_16241130_16241280_16243641_16243728_16257350_16257384_16257989_16259589_16268118
ENSMUSG00000047215.15_0	chr5	-	691	8	FSM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	46	1	0	0	multi-exon	FALSE	canonical	3	5084	junction_7	3201.89202994551	2263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTGTGTCCTTGTCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	65548741	65545707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ENSMUSG00000047215.15_1	chr5	-	670	7	ISM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	450	1	-3	0	3prime_fragment	FALSE	canonical	3	8565	junction_1	2258.85099233118	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTGTGTCCTTGTCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	65548337	65545707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
ENSMUSG00000047215.15_2	chr5	-	811	7	FSM	ENSMUSG00000047215.15	ENSMUST00000120094.5	680	7	-18	-113	0	0	multi-exon	FALSE	canonical	3	5084	junction_6	3284.20622914511	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTGTGTCCTTGTCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	65548741	65545707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ENSMUSG00000047220.6_1	chr9	-	3054	8	NNC	ENSMUSG00000047220.6	novel	2890	7	NA	NA	-3338	115	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	4.97750039719553	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATCATTGGGAAAGGTTA	NA	False	NA	-9	True	ATTAAA	-19	NA	108309021	108280694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_108283054_108283809_108283914_108289691_108289780_108290161_108290211_108294520_108294685_108298588_108298761_108305614_108305682_108308970
ENSMUSG00000047220.6_7	chr9	-	92	1	ISM	ENSMUSG00000047220.6	ENSMUST00000076592.4	2890	7	24769	13	24769	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAAATAAATTTTCAG	NA	False	NA	NA	False	NA	NA	NA	108280914	108280822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_108280800_108280900
ENSMUSG00000047221.6_1	chr5	+	2777	7	NIC	ENSMUSG00000047221.6	novel	3027	8	NA	NA	-15	-83	combination_of_known_splicesites	FALSE	canonical	1	5	junction_3	19.9534179750961	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGAGTCTCCTTTTTA	NA	False	NA	8	True	AATAAA	-8	NA	21629983	21687039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_21630575_21634721_21634832_21638688_21638782_21652313_21652356_21660779_21660876_21664156_21664292_21685329
ENSMUSG00000047221.6_2	chr5	+	2938	8	FSM	ENSMUSG00000047221.6	ENSMUST00000056045.5	3027	8	6	83	6	-83	multi-exon	FALSE	canonical	1	21	junction_1	12.2873753029984	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGAGTCTCCTTTTTA	NA	False	NA	8	True	AATAAA	-8	NA	21629961	21687039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_21630575_21634721_21634832_21638688_21638782_21643697_21643837_21652313_21652356_21660779_21660876_21664156_21664292_21685329
ENSMUSG00000047221.6_8	chr5	+	1258	1	ISM	ENSMUSG00000047221.6	ENSMUST00000056045.5	3027	8	55833	76	46062	-76	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCCTTTTTATTAATAT	NA	False	NA	15	True	AATAAA	-15	NA	21685788	21687046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_21685800_21687000
ENSMUSG00000047227.6_1	chr12	+	2909	5	FSM	ENSMUSG00000047227.6	ENSMUST00000058135.6	1468	5	-14	-1427	-14	1426	multi-exon	FALSE	canonical	3	22	junction_3	5.11737237261468	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGATAGTCTCCCAGCTT	NA	False	NA	NA	False	AATAAA	-21	NA	64964665	64972792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_64964966_64967578_64968104_64969098_64969189_64970280_64970416_64970933
ENSMUSG00000047238.5_0	chrX	-	1389	1	FSM	ENSMUSG00000047238.5	ENSMUST00000051484.5	1410	1	13	8	13	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATGTTTTGTTCAT	NA	False	NA	NA	False	AATAAA	-9	NA	151820558	151819169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_151819200_151820600
ENSMUSG00000047242.15_0	chrX	-	2372	7	FSM	ENSMUSG00000047242.15	ENSMUST00000055497.15	2633	7	260	1	260	-1	multi-exon	FALSE	canonical	3	7	junction_1	4.34613493680177	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCATTAACCTTTCATTT	NA	False	NA	NA	False	AATAAA	-11	NA	105263247	105250489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_105252264_105253312_105253424_105259732_105259803_105261702_105261838_105261915_105262053_105262501_105262584_105263184
ENSMUSG00000047242.15_1	chrX	-	2503	8	FSM	ENSMUSG00000047242.15	ENSMUST00000113495.9	2512	8	9	0	9	0	multi-exon	FALSE	canonical	2	3	junction_7	5.73211504221111	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATTAACCTTTCATTTC	NA	False	NA	NA	False	AATAAA	-12	NA	105264755	105250488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_105252264_105253312_105253424_105259732_105259803_105261702_105261838_105261915_105262053_105262501_105262584_105263184_105263305_105264682
ENSMUSG00000047248.21_0	chr7	+	7680	33	FSM	ENSMUSG00000047248.21	ENSMUST00000051777.15	7803	33	123	0	75	0	multi-exon	TRUE	canonical	3	28	junction_15	6.6496446098645	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTGTACAAGTGTTTT	NA	False	NA	20	True	AATAAA	-14	NA	100021562	100119357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_100021704_100023470_100023741_100029174_100029333_100039285_100039510_100040139_100040388_100044374_100044508_100044961_100045052_100048874_100049023_100055164_100055314_100056068_100056279_100056923_100057037_100059538_100059658_100062532_100062656_100065255_100065748_100067650_100067803_100068857_100069105_100071721_100071903_100073946_100074131_100075183_100075357_100076379_100076504_100079256_100079526_100079943_100080034_100081177_100081781_100084964_100085304_100089379_100089519_100090238_100090304_100092563_100092770_100093513_100093648_100097918_100098081_100100775_100100997_100103809_100104699_100108983_100109096_100118585
ENSMUSG00000047248.21_16	chr7	+	6035	24	ISM	ENSMUSG00000047248.21	ENSMUST00000051777.15	7803	33	34714	-1	9916	-1	3prime_fragment	FALSE	canonical	3	28	junction_6	6.21784735329557	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGTACAAGTGTTTTT	NA	False	NA	21	True	AATAAA	-15	NA	100056153	100119358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100056279_100056923_100057037_100059538_100059658_100062532_100062656_100065255_100065748_100067650_100067803_100068857_100069105_100071721_100071903_100073946_100074131_100075183_100075357_100076379_100076504_100079256_100079526_100079943_100080034_100081177_100081781_100084964_100085304_100089379_100089519_100090238_100090304_100092563_100092770_100093513_100093648_100097918_100098081_100100775_100100997_100103809_100104699_100108983_100109096_100118585
ENSMUSG00000047248.21_17	chr7	+	5441	20	ISM	ENSMUSG00000047248.21	ENSMUST00000051777.15	7803	33	43929	0	-4343	0	3prime_fragment	FALSE	canonical	3	28	junction_2	6.60604943946652	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTGTACAAGTGTTTT	NA	False	NA	20	True	AATAAA	-14	NA	100065368	100119357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100065748_100067650_100067803_100068857_100069105_100071721_100071903_100073946_100074131_100075183_100075357_100076379_100076504_100079256_100079526_100079943_100080034_100081177_100081781_100084964_100085304_100089379_100089519_100090238_100090304_100092563_100092770_100093513_100093648_100097918_100098081_100100775_100100997_100103809_100104699_100108983_100109096_100118585
ENSMUSG00000047248.21_23	chr7	+	3448	11	ISM	ENSMUSG00000047248.21	ENSMUST00000051777.15	7803	33	59933	-1	2016	-1	3prime_fragment	FALSE	canonical	3	38	junction_4	5.94978991225741	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGTACAAGTGTTTTT	NA	False	NA	21	True	AATAAA	-15	NA	100081372	100119358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100081781_100084964_100085304_100089379_100089519_100090238_100090304_100092563_100092770_100093513_100093648_100097918_100098081_100100775_100100997_100103809_100104699_100108983_100109096_100118585
ENSMUSG00000047248.21_26	chr7	+	242	2	ISM	ENSMUSG00000047248.21	ENSMUST00000156559.8	1909	10	75	32828	75	-32828	5prime_fragment	FALSE	canonical	3	38	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAAGCCTCCTACTTCTGT	NA	False	NA	NA	False	NA	NA	NA	100021562	100023571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_100021704_100023470
ENSMUSG00000047248.21_4	chr7	+	7677	33	NNC	ENSMUSG00000047248.21	novel	7803	33	NA	NA	77	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	10.4020261698142	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTGTACAAGTGTTTT	NA	False	NA	20	True	AATAAA	-14	NA	100021564	100119357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_100021704_100023470_100023741_100029174_100029333_100039285_100039510_100040139_100040388_100044374_100044508_100044961_100045052_100048874_100049023_100055164_100055314_100056068_100056279_100056923_100057037_100059538_100059658_100062532_100062656_100065255_100065748_100067650_100067803_100068857_100069105_100071721_100071903_100073946_100074131_100075183_100075357_100076379_100076504_100079256_100079526_100079943_100080034_100081178_100081781_100084964_100085304_100089379_100089519_100090238_100090304_100092563_100092770_100093513_100093648_100097918_100098081_100100775_100100997_100103809_100104699_100108983_100109096_100118585
ENSMUSG00000047250.14_0	chr2	+	2768	11	FSM	ENSMUSG00000047250.14	ENSMUST00000062069.6	2867	11	86	13	-44	-10	multi-exon	TRUE	canonical	0	0	junction_1	1.552417469626	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTCTCCAAAGTTGCTT	NA	False	NA	NA	False	AATAAA	-2	NA	36120523	36142271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_36120582_36120679_36120776_36127218_36127336_36127662_36127804_36127968_36128113_36130607_36130790_36130882_36130967_36132774_36133022_36135055_36135343_36139107_36139256_36141007
ENSMUSG00000047260.5_0	chr11	-	1304	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	16	12	16	-12	multi-exon	FALSE	canonical	3	946	junction_1	0	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGTAGTAAACATGTTGC	NA	False	NA	-39	True	AATAAA	-13	NA	73067847	73066356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_73067578_73067764
ENSMUSG00000047260.5_1	chr11	-	1152	1	ISM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	355	12	320	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGTAGTAAACATGTTGC	NA	False	NA	-39	True	AATAAA	-13	NA	73067508	73066356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_73066400_73067500
ENSMUSG00000047261.10_0	chr16	-	1285	3	FSM	ENSMUSG00000047261.10	ENSMUST00000102817.5	1420	3	74	61	74	-45	multi-exon	FALSE	canonical	2	3	junction_1	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAAGGCTGTGAGGCTC	NA	False	NA	-59	True	AATAAA	-29	NA	42160940	42068865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_42069478_42112161_42112730_42160835
ENSMUSG00000047264.9_0	chr8	+	1958	2	FSM	ENSMUSG00000047264.9	ENSMUST00000061508.8	1999	2	41	0	9	0	multi-exon	FALSE	canonical	3	37	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTTGTTACTTGCC	6357	False	NA	16	True	AGTAAA	-17	NA	3543178	3547208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3543310_3545381
ENSMUSG00000047264.9_1	chr8	+	4036	1	FSM	ENSMUSG00000047264.9	ENSMUST00000208423.2	2200	1	-1836	0	3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTTGTTACTTGCC	6351	False	NA	16	True	AGTAAA	-17	NA	3543172	3547208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3543200_3547200
ENSMUSG00000047281.4_0	chr4	-	1283	1	FSM	ENSMUSG00000047281.4	ENSMUST00000057311.4	1613	1	324	6	324	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCGGTCTTCTTCAGTT	NA	False	NA	-16	True	AATAAA	-12	NA	133329155	133327872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133327900_133329200
ENSMUSG00000047284.15_20	chr11	+	4760	28	ISM	ENSMUSG00000047284.15	ENSMUST00000061837.11	5188	29	1246	4	-255	-4	3prime_fragment	FALSE	canonical	3	43	junction_7	16.674895088134	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCATCTGCCTCCGCCTC	NA	False	NA	11	True	AATAAA	-11	NA	69793962	69804642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_69794279_69794479_69794546_69794690_69794990_69795158_69795271_69795359_69795449_69796356_69796430_69796546_69796812_69797051_69797234_69797343_69797430_69797551_69797715_69797809_69798009_69798089_69798167_69798249_69798329_69798662_69798839_69798921_69799054_69799284_69799431_69799503_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754_69802921_69803952
ENSMUSG00000047284.15_25	chr11	+	4257	26	ISM	ENSMUSG00000047284.15	ENSMUST00000061837.11	5188	29	2095	4	-49	-4	3prime_fragment	FALSE	canonical	3	43	junction_5	16.3072499214307	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCATCTGCCTCCGCCTC	NA	False	NA	11	True	AATAAA	-11	NA	69794811	69804642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_69794990_69795158_69795271_69795359_69795449_69796356_69796430_69796546_69796812_69797051_69797234_69797343_69797430_69797551_69797715_69797809_69798009_69798089_69798167_69798249_69798329_69798662_69798839_69798921_69799054_69799284_69799431_69799503_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754_69802921_69803952
ENSMUSG00000047284.15_3	chr11	+	5207	29	FSM	ENSMUSG00000047284.15	ENSMUST00000177476.8	4952	29	46	-301	-29	-4	multi-exon	TRUE	canonical	3	25	junction_15	17.9310968625424	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCATCTGCCTCCGCCTC	NA	False	NA	11	True	AATAAA	-11	NA	69792687	69804642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69793012_69793833_69794279_69794479_69794546_69794690_69794990_69795158_69795271_69795359_69795449_69796356_69796430_69796546_69796812_69797051_69797234_69797343_69797430_69797551_69797715_69797809_69798009_69798089_69798167_69798249_69798329_69798662_69798833_69798921_69799054_69799284_69799431_69799503_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754_69802921_69803952
ENSMUSG00000047284.15_32	chr11	+	3476	21	ISM	ENSMUSG00000047284.15	ENSMUST00000061837.11	5188	29	4399	4	-974	-4	3prime_fragment	FALSE	canonical	3	43	junction_7	16.2339151162004	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCATCTGCCTCCGCCTC	NA	False	NA	11	True	AATAAA	-11	NA	69797115	69804642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_69797234_69797343_69797430_69797551_69797715_69797809_69798009_69798089_69798167_69798249_69798329_69798662_69798839_69798921_69799054_69799284_69799431_69799503_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754_69802921_69803952
ENSMUSG00000047284.15_49	chr11	+	2220	12	ISM	ENSMUSG00000047284.15	ENSMUST00000061837.11	5188	29	6868	3	124	-3	3prime_fragment	FALSE	canonical	3	59	junction_1	13.4588445220148	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCATCTGCCTCCGCCTCT	NA	False	NA	12	True	AATAAA	-12	NA	69799584	69804643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754_69802921_69803952
ENSMUSG00000047284.15_5	chr11	+	5205	29	FSM	ENSMUSG00000047284.15	ENSMUST00000061837.11	5188	29	-21	4	-21	-4	multi-exon	FALSE	canonical	3	43	junction_8	16.6703864896494	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCATCTGCCTCCGCCTC	NA	False	NA	11	True	AATAAA	-11	NA	69792695	69804642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69793012_69793833_69794279_69794479_69794546_69794690_69794990_69795158_69795271_69795359_69795449_69796356_69796430_69796546_69796812_69797051_69797234_69797343_69797430_69797551_69797715_69797809_69798009_69798089_69798167_69798249_69798329_69798662_69798839_69798921_69799054_69799284_69799431_69799503_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754_69802921_69803952
ENSMUSG00000047342.18_0	chr11	-	2782	4	NIC	ENSMUSG00000047342.18	novel	679	6	NA	NA	0	-19	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	27.3130005674953	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATTATAGGAAAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	62680243	62669231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_62671726_62678784_62678871_62679755_62679916_62680201
ENSMUSG00000047342.18_1	chr11	-	2980	6	FSM	ENSMUSG00000047342.18	ENSMUST00000054654.13	3051	6	45	26	0	-26	multi-exon	FALSE	canonical	3	31	junction_3	11.4262854856686	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGGAATAAAATTATAGGAA	NA	False	NA	NA	False	AATACA	-42	NA	62680243	62669238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_62671726_62674497_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
ENSMUSG00000047342.18_14	chr11	-	2763	4	ISM	ENSMUSG00000047342.18	ENSMUST00000152602.8	679	6	1422	-2335	985	-8	3prime_fragment	FALSE	canonical	0	0	junction_3	17.931970208417	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTAATCGCAGGTTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	62678821	62669220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_62671726_62674497_62674588_62675704_62675836_62678784
ENSMUSG00000047342.18_2	chr11	-	1672	5	NIC	ENSMUSG00000047342.18	novel	679	6	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	17.8535710713571	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTGGGGTGTGTCTGTGT	NA	False	NA	-6	True	AATAGA	-15	NA	62680243	62670431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_62671726_62674497_62674588_62678784_62678871_62679755_62679916_62680201
ENSMUSG00000047342.18_4	chr11	-	2923	5	ISM	ENSMUSG00000047342.18	ENSMUST00000054654.13	3051	6	371	43	-111	-43	3prime_fragment	FALSE	canonical	3	31	junction_3	12.1963109176505	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTATTAGTTTATACGG	NA	False	NA	NA	False	AGTAAA	-33	NA	62679917	62669255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_62671726_62674497_62674588_62675704_62675820_62678784_62678871_62679755
ENSMUSG00000047342.18_5	chr11	-	2914	5	FSM	ENSMUSG00000047342.18	ENSMUST00000145474.8	641	5	-29	-2244	-15	-533	multi-exon	FALSE	canonical	3	31	junction_2	12.1243556529821	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATCTGTGTGTGTAAAT	NA	False	NA	NA	False	AGTAAA	-19	NA	62680264	62672097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
ENSMUSG00000047342.18_8	chr11	-	2843	4	NIC	ENSMUSG00000047342.18	novel	3051	6	NA	NA	-111	-8	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	19.6185852927496	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTAATCGCAGGTTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	62679917	62669220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_62671726_62674497_62674588_62678784_62678871_62679755
ENSMUSG00000047342.18_9	chr11	-	2444	1	ISM	ENSMUSG00000047342.18	ENSMUST00000054654.13	3051	6	8624	8	3313	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTAATCGCAGGTTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	62671664	62669220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_62669200_62671700
ENSMUSG00000047361.17_1	chr1	+	1660	9	NIC	ENSMUSG00000047361.17	novel	933	5	NA	NA	-14	-4	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	3.23795846174715	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCATTTTGTTTTCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	59658558	59675572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_59658605_59664245_59664337_59666615_59666767_59667328_59667444_59669153_59669486_59671372_59671576_59672305_59672479_59673152_59673373_59675243
ENSMUSG00000047361.17_3	chr1	+	1672	7	NIC	ENSMUSG00000047361.17	novel	3595	20	NA	NA	-3014	-3	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	2.98142396999972	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATTTTGTTTTCTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	59666467	59675573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_59666767_59667328_59667444_59669153_59669486_59671372_59671576_59672305_59672479_59673152_59673373_59675243
ENSMUSG00000047361.17_4	chr1	+	1809	10	NIC	ENSMUSG00000047361.17	novel	933	5	NA	NA	-45	-100	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	5.01109879279097	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCAACCGTACCTAGGAC	NA	False	NA	NA	False	AATAAA	-28	NA	59645895	59675476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_59646114_59646891_59646965_59664245_59664337_59666615_59666767_59667328_59667444_59669153_59669486_59671372_59671576_59672305_59672479_59673152_59673373_59675243
ENSMUSG00000047368.5_0	chr19	+	2576	4	FSM	ENSMUSG00000047368.5	ENSMUST00000052556.5	2259	4	-320	3	20	-3	multi-exon	FALSE	canonical	3	120	junction_3	15.3260852434302	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTCGGCTGTGCTTGTG	NA	False	NA	9	True	AGTAAA	-12	NA	21630568	21662998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_21630958_21655716_21656187_21658231_21658412_21661461
ENSMUSG00000047368.5_6	chr19	+	2765	2	FSM	ENSMUSG00000047368.5	ENSMUST00000236549.2	1954	2	-814	3	-814	-3	multi-exon	FALSE	canonical	3	120	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTCGGCTGTGCTTGTG	3623	False	NA	9	True	AGTAAA	-12	NA	21657183	21662998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_21658412_21661461
ENSMUSG00000047368.5_9	chr19	+	1010	1	ISM	ENSMUSG00000047368.5	ENSMUST00000052556.5	2259	4	31100	3	3991	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTCGGCTGTGCTTGTG	8428	False	NA	9	True	AGTAAA	-12	NA	21661988	21662998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_21662000_21663000
ENSMUSG00000047371.8_0	chr7	-	1697	1	ISM	ENSMUSG00000047371.8	ENSMUST00000060783.7	2356	2	930	2	930	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGATTCGTCCTTAAGAT	6251	False	NA	-3	True	AATAAA	-14	NA	126943665	126941968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126942000_126943700
ENSMUSG00000047371.8_1	chr7	-	2518	2	FSM	ENSMUSG00000047371.8	ENSMUST00000060783.7	2356	2	-164	2	2	-2	multi-exon	FALSE	canonical	3	6	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGATTCGTCCTTAAGAT	5157	False	NA	-3	True	AATAAA	-14	NA	126944759	126941968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126944048_126944320
ENSMUSG00000047379.8_0	chr19	+	2260	1	FSM	ENSMUSG00000047379.8	ENSMUST00000235776.2	2224	1	-36	0	-36	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGGCTCTGTTACTCT	247	False	NA	8	True	AATAAA	-15	NA	5088898	5091158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5088900_5091200
ENSMUSG00000047388.11_0	chr8	+	4857	4	FSM	ENSMUSG00000047388.11	ENSMUST00000109099.4	4877	4	11	9	11	-9	multi-exon	FALSE	canonical	3	272	junction_2	31.5066130624456	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTCTACCTTTCTGTGT	NA	False	NA	15	True	ATTAAA	-9	NA	117670142	117687175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_117670490_117679612_117679739_117681452_117681653_117682991
ENSMUSG00000047388.11_9	chr8	+	3114	1	ISM	ENSMUSG00000047388.11	ENSMUST00000109099.4	4877	4	13932	7	13932	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTACCTTTCTGTGTGA	NA	False	NA	17	True	ATTAAA	-11	NA	117684063	117687177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_117684100_117687200
ENSMUSG00000047407.18_1	chr17	-	1613	3	FSM	ENSMUSG00000047407.18	ENSMUST00000059775.15	1631	3	4	14	4	-8	multi-exon	FALSE	canonical	3	373	junction_2	253.5	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTTATTGCAATGAAGA	NA	False	NA	70	True	AATAAA	-12	NA	71158198	71151213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71152268_71153166_71153394_71157866
ENSMUSG00000047407.18_3	chr17	-	1343	3	FSM	ENSMUSG00000047407.18	ENSMUST00000118283.8	1388	3	37	8	37	-8	multi-exon	FALSE	canonical	3	296	junction_2	292	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTTATTGCAATGAAGA	NA	False	NA	70	True	AATAAA	-12	NA	71160504	71151213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71152268_71153166_71153394_71160442
ENSMUSG00000047407.18_4	chr17	-	720	1	ISM	ENSMUSG00000047407.18	ENSMUST00000172229.8	1446	3	4852	14	1388	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTTATTGCAATGAAGA	NA	False	NA	70	True	AATAAA	-12	NA	71151933	71151213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_71151200_71151900
ENSMUSG00000047407.18_7	chr17	-	2265	2	FSM	ENSMUSG00000047407.18	ENSMUST00000135007.3	1291	2	-205	-769	-205	-1	multi-exon	FALSE	canonical	3	880	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCAATGAAGAGCATTTT	NA	False	NA	77	True	AATAAA	-19	NA	71154370	71151206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71152268_71153166
ENSMUSG00000047407.18_8	chr17	-	1446	3	FSM	ENSMUSG00000047407.18	ENSMUST00000172229.8	1446	3	-14	14	3	-8	multi-exon	FALSE	canonical	3	41	junction_2	419.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTTATTGCAATGAAGA	NA	False	NA	70	True	AATAAA	-12	NA	71156799	71151213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71152268_71153166_71153394_71156634
ENSMUSG00000047409.14_0	chr9	+	4620	8	FSM	ENSMUSG00000047409.14	ENSMUST00000073109.12	4589	8	89	-120	89	120	multi-exon	FALSE	canonical	0	0	junction_2	3.56284683238284	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTCTCGTGGTTGATCTG	NA	False	NA	NA	False	AATAAA	-14	NA	118755609	118873186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_118756009_118840302_118840458_118849079_118849113_118856004_118856107_118859263_118859321_118862603_118862697_118866428_118866615_118869591
ENSMUSG00000047409.14_2	chr9	+	2317	3	FSM	ENSMUSG00000065513.3_ENSMUSG00000047409.14	ENSMUST00000174132.2	1200	3	-1128	11	77	-11	multi-exon	FALSE	canonical	3	7	junction_2	2	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACATACCAAAAAGAAA	NA	False	NA	NA	False	CATAAA	-32	NA	118860940	118869966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_118862697_118866428_118866615_118869591
ENSMUSG00000047409.14_4	chr9	+	2539	1	ISM	ENSMUSG00000047409.14	ENSMUST00000073109.12	4589	8	114165	842	7617	-842	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGGGCTTGAGAACGTAT	NA	False	NA	NA	False	ATTAAA	-1	NA	118869685	118872224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_118869700_118872200
ENSMUSG00000047412.17_27	chr9	+	3565	1	ISM	ENSMUSG00000047412.17	ENSMUST00000115222.10	8861	6	41666	9	18060	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAATAAGTCTGCTGTTG	NA	False	NA	74	True	ATTAAA	-19	NA	30983607	30987172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_30983600_30987200
ENSMUSG00000047412.17_3	chr9	+	3392	6	FSM	ENSMUSG00000047412.17	ENSMUST00000115222.10	8861	6	-208	5677	-206	-25	multi-exon	FALSE	canonical	3	240	junction_5	55.0694107468021	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTAAAATATTTATGAAGC	NA	False	NA	7	True	ATTAAA	-10	NA	30941733	30981504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_30942255_30964535_30965610_30973336_30973422_30975474_30975639_30977954_30978039_30980040
ENSMUSG00000047412.17_5	chr9	+	3617	6	NIC	ENSMUSG00000047412.17	novel	8861	6	NA	NA	-211	-22	combination_of_known_junctions	FALSE	canonical	3	88	junction_5	107.784971123065	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATATTTATGAAGCCAC	NA	False	NA	10	True	ATTAAA	-13	NA	30941728	30981507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_30942255_30964535_30965610_30973336_30973422_30975474_30975639_30977954_30978256_30980040
ENSMUSG00000047412.17_6	chr9	+	3338	6	FSM	ENSMUSG00000047412.17	ENSMUST00000216649.2	3157	6	-206	25	-206	-25	multi-exon	FALSE	canonical	3	75	junction_3	111.276951791465	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTAAAATATTTATGAAGC	NA	False	NA	7	True	ATTAAA	-10	NA	30941733	30981504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_30942255_30964535_30965610_30973336_30973422_30975528_30975639_30977954_30978039_30980040
ENSMUSG00000047414.7_0	chr12	+	5059	2	FSM	ENSMUSG00000047414.7	ENSMUST00000110117.2	3223	2	-22	-1814	-22	1814	multi-exon	FALSE	canonical	3	13	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTGAACATAGTTATGAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	95662108	95749695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_95662753_95745280
ENSMUSG00000047414.7_2	chr12	+	3604	1	ISM	ENSMUSG00000047414.7	ENSMUST00000057324.4	7099	2	89377	9	86246	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAAACCTATTGTGTT	317	False	NA	NA	False	AGTAAA	-11	NA	95748376	95751980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_95748400_95752000
ENSMUSG00000047415.13_0	chr12	-	3011	3	FSM	ENSMUSG00000047415.13	ENSMUST00000053668.10	3099	3	84	4	-35	-4	multi-exon	FALSE	canonical	1	1	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATAGCAGAGTGTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	100865699	100842947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_100845672_100854242_100854332_100865501
ENSMUSG00000047415.13_1	chr12	-	2919	3	FSM	ENSMUSG00000047415.13	ENSMUST00000110065.8	2900	3	-23	4	-6	-4	multi-exon	FALSE	canonical	0	0	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATAGCAGAGTGTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	100874463	100842947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_100845672_100854242_100854332_100874357
ENSMUSG00000047415.13_4	chr12	-	2994	4	NIC	ENSMUSG00000047415.13	novel	2900	3	NA	NA	-3	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATAGCAGAGTGTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	100874460	100842947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_100845672_100854242_100854332_100865501_100865580_100874357
ENSMUSG00000047417.19_0	chr10	-	4499	15	FSM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	14	737	14	2	multi-exon	FALSE	canonical	3	315	junction_13	35.2049393566022	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTCATAGTGTGTGGT	9435	False	NA	-3	True	AATAAA	-16	NA	80397380	80377495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380255_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166_80386900_80397097
ENSMUSG00000047417.19_1	chr10	-	4524	15	NIC	ENSMUSG00000047417.19	novel	5250	15	NA	NA	13	2	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	98.8862467480608	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTCATAGTGTGTGGT	9434	False	NA	-3	True	AATAAA	-16	NA	80397381	80377495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380279_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166_80386900_80397097
ENSMUSG00000047417.19_17	chr10	-	4583	14	NIC	ENSMUSG00000047417.19	novel	5250	15	NA	NA	13	2	intron_retention	FALSE	canonical	3	315	junction_12	36.5310923742936	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTCATAGTGTGTGGT	9434	False	NA	-3	True	AATAAA	-16	NA	80397381	80377495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80378316_80378398_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380255_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166_80386900_80397097
ENSMUSG00000047417.19_2	chr10	-	3249	14	ISM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	11462	737	-636	2	3prime_fragment	FALSE	canonical	3	315	junction_13	33.5269916872605	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTCATAGTGTGTGGT	9449	False	NA	-3	True	AATAAA	-16	NA	80385932	80377495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380255_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166
ENSMUSG00000047423.11_1	chr19	+	1497	2	FSM	ENSMUSG00000047423.11	ENSMUST00000159759.3	1528	2	13	18	0	-18	multi-exon	FALSE	canonical	3	164	junction_1	0	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGAGTGTTTTTTACA	260	False	NA	16	True	AATAAA	-17	NA	5475184	5477323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5475337_5475978
ENSMUSG00000047423.11_2	chr19	+	1335	1	ISM	ENSMUSG00000047423.11	ENSMUST00000159759.3	1528	2	817	18	804	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGAGTGTTTTTTACA	1064	False	NA	16	True	AATAAA	-17	NA	5475988	5477323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5476000_5477300
ENSMUSG00000047423.11_3	chr19	+	1509	2	FSM	ENSMUSG00000047423.11	ENSMUST00000054477.8	1529	2	2	18	2	-18	multi-exon	FALSE	canonical	3	21	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGAGTGTTTTTTACA	262	False	NA	16	True	AATAAA	-17	NA	5475186	5477323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5475337_5475964
ENSMUSG00000047434.15_0	chr16	-	3436	4	FSM	ENSMUSG00000047434.15	ENSMUST00000055389.9	3470	4	28	6	28	-6	multi-exon	FALSE	canonical	3	135	junction_2	21.3124898175277	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAAGCTACAGTGTCTTC	NA	False	NA	-11	True	ATTAAA	-6	NA	30900222	30773967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_30776553_30826531_30826665_30869449_30869598_30899652
ENSMUSG00000047434.15_1	chr16	-	1942	1	ISM	ENSMUSG00000047434.15	ENSMUST00000055389.9	3470	4	124341	6	104336	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAAGCTACAGTGTCTTC	NA	False	NA	-11	True	ATTAAA	-6	NA	30775909	30773967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_30774000_30775900
ENSMUSG00000047443.15_0	chr1	+	2829	8	FSM	ENSMUSG00000047443.15	ENSMUST00000086861.12	2815	8	-20	6	-20	-6	multi-exon	FALSE	canonical	3	23	junction_7	6.01698276818648	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGAGTTGGCATTCTCTG	NA	False	NA	2	True	ATTAAA	-14	NA	91294131	91301933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91294371_91296086_91296204_91297092_91297196_91297807_91298065_91298136_91298246_91298346_91298438_91299103_91299183_91300099
ENSMUSG00000047443.15_11	chr1	+	2250	5	ISM	ENSMUSG00000047443.15	ENSMUST00000086861.12	2815	8	3778	4	-486	-4	3prime_fragment	FALSE	canonical	3	23	junction_4	4.15331193145904	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTTGGCATTCTCTGTC	1922	False	NA	4	True	ATTAAA	-16	NA	91297929	91301935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_91298065_91298136_91298246_91298346_91298438_91299103_91299183_91300099
ENSMUSG00000047443.15_12	chr1	+	970	1	ISM	ENSMUSG00000047443.15	ENSMUST00000086861.12	2815	8	6814	4	2550	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTTGGCATTCTCTGTC	2593	False	NA	4	True	ATTAAA	-16	NA	91300965	91301935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_91301000_91301900
ENSMUSG00000047443.15_9	chr1	+	3457	7	NIC	ENSMUSG00000047443.15	novel	2815	8	NA	NA	-38	-8	intron_retention	FALSE	canonical	3	23	junction_6	5.3748384988657	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGAGTTGGCATTCTC	NA	False	NA	0	True	ATTAAA	-12	NA	91294113	91301931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_91294371_91296086_91296204_91297092_91298065_91298136_91298246_91298346_91298438_91299103_91299183_91300099
ENSMUSG00000047446.19_0	chr12	-	1161	2	FSM	ENSMUSG00000047446.19	ENSMUST00000101472.4	1200	2	39	0	39	0	multi-exon	FALSE	canonical	3	220	junction_1	0	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCTAGTGTTTTGTGCT	NA	False	NA	-7	True	AATAAA	-15	NA	40087985	40085820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_40086833_40087836
ENSMUSG00000047446.19_1	chr12	-	1124	2	FSM	ENSMUSG00000047446.19	ENSMUST00000146905.2	3710	2	55	2531	2	0	multi-exon	FALSE	canonical	3	67	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCTAGTGTTTTGTGCT	NA	False	NA	-7	True	AATAAA	-15	NA	40087373	40085820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_40086833_40087261
ENSMUSG00000047446.19_2	chr12	-	2138	1	ISM	ENSMUSG00000047446.19	ENSMUST00000146905.2	3710	2	2000	1	1938	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTGCGTTAGACTATCA	NA	False	NA	-1	True	AATAAA	-15	NA	40085428	40083290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_40083300_40085400
ENSMUSG00000047454.13_0	chr12	+	3226	23	FSM	ENSMUSG00000047454.13	ENSMUST00000110388.10	3300	23	70	4	70	-4	multi-exon	FALSE	canonical	3	35	junction_9	13.5066558431803	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAAATGTATTGTGCG	NA	False	NA	17	True	AATAAA	-20	NA	78273496	78731537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78540723_78540832_78551390_78551526_78609629_78609673_78637307_78637446_78655918_78656012_78659745_78659802_78670077_78670198_78672907_78672967_78673880_78674035_78684231_78684354_78701580_78701669_78711264_78711339_78716597_78716663_78727064_78727169_78729491_78729589_78730551
ENSMUSG00000047454.13_10	chr12	+	3139	22	NIC	ENSMUSG00000047454.13	novel	3300	23	NA	NA	53	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	17.5868431548756	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTATTGTGCGGCCT	NA	False	NA	21	True	AATAAA	-24	NA	78273479	78731541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78551390_78551526_78609629_78609673_78637307_78637446_78655918_78656012_78659745_78659802_78670077_78670198_78672907_78672967_78673880_78674035_78684231_78684354_78701580_78701669_78711264_78711339_78716597_78716663_78727064_78727169_78729491_78729589_78730551
ENSMUSG00000047454.13_15	chr12	+	1597	8	ISM	ENSMUSG00000047454.13	ENSMUST00000110388.10	3300	23	400547	4	-55447	-4	3prime_fragment	FALSE	canonical	3	46	junction_1	4.37525509460387	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAAATGTATTGTGCG	NA	False	NA	17	True	AATAAA	-20	NA	78673973	78731537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_78674035_78684231_78684354_78701580_78701669_78711264_78711339_78716597_78716663_78727064_78727169_78729491_78729589_78730551
ENSMUSG00000047454.13_4	chr12	+	2139	14	ISM	ENSMUSG00000047454.13	ENSMUST00000110388.10	3300	23	-275	61027	-1	-60353	5prime_fragment	FALSE	canonical	3	35	junction_9	16.0461612213273	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTTCTTGGAATCAGAGT	NA	False	NA	NA	False	AATAAA	-10	NA	78273151	78670514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78540723_78540832_78551390_78551526_78609629_78609673_78637307_78637446_78655918_78656012_78659745_78659802_78670077
ENSMUSG00000047454.13_7	chr12	+	2609	19	ISM	ENSMUSG00000047454.13	ENSMUST00000110388.10	3300	23	76	19562	76	-18888	5prime_fragment	FALSE	canonical	3	35	junction_9	14.8183444869302	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAATTAAATCTCTATTAA	NA	False	NA	NA	False	AGTAAA	-18	NA	78273502	78711979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78540723_78540832_78551390_78551526_78609629_78609673_78637307_78637446_78655918_78656012_78659745_78659802_78670077_78670198_78672907_78672967_78673880_78674035_78684231_78684354_78701580_78701669_78711264
ENSMUSG00000047459.15_0	chr2	+	649	4	FSM	ENSMUSG00000047459.15	ENSMUST00000109682.9	684	4	31	4	31	1	multi-exon	FALSE	canonical	3	1428	junction_1	142.385236438177	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTTGTGTCTTTAC	NA	False	NA	15	True	AGTAAA	-17	NA	155078485	155092193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_155078538_155084650_155084727_155089690_155089859_155091840
ENSMUSG00000047466.11_0	chr18	-	4481	3	NIC	ENSMUSG00000047466.11	novel	5125	5	NA	NA	39516	0	combination_of_known_splicesites	FALSE	canonical	3	148	junction_2	22.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTGACTCTTTCTGAG	5661	False	NA	-8	True	AATAAA	-15	NA	77762117	77719192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_77723025_77730763_77730891_77761595
ENSMUSG00000047466.11_1	chr18	-	4926	4	NIC	ENSMUSG00000047466.11	novel	5125	5	NA	NA	2	0	intron_retention	FALSE	canonical	3	34	junction_3	66.9178600972864	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTGACTCTTTCTGAG	NA	False	NA	-8	True	AATAAA	-15	NA	77802184	77719192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_77723025_77730763_77730891_77761595_77762381_77802002
ENSMUSG00000047466.11_2	chr18	-	5157	5	FSM	ENSMUSG00000047466.11	ENSMUST00000074653.6	5125	5	-32	0	18	0	multi-exon	FALSE	canonical	3	42	junction_2	68.2948570538075	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTGACTCTTTCTGAG	NA	False	NA	-8	True	AATAAA	-15	NA	77801665	77719192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_77723025_77730763_77730891_77740824_77740993_77761595_77762381_77801420
ENSMUSG00000047466.11_4	chr18	-	5095	5	FSM	ENSMUSG00000047466.11	ENSMUST00000237203.2	1606	5	1	-3490	1	0	multi-exon	FALSE	canonical	3	34	junction_4	65.6291665343999	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTGACTCTTTCTGAG	NA	False	NA	-8	True	AATAAA	-15	NA	77802185	77719192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_77723025_77730763_77730891_77740824_77740993_77761595_77762381_77802002
ENSMUSG00000047466.11_5	chr18	-	2810	1	ISM	ENSMUSG00000047466.11	ENSMUST00000074653.6	5125	5	79631	0	79631	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTGACTCTTTCTGAG	NA	False	NA	-8	True	AATAAA	-15	NA	77722002	77719192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_77719200_77722000
ENSMUSG00000047466.11_7	chr18	-	4989	4	NIC	ENSMUSG00000047466.11	novel	5125	5	NA	NA	18	0	combination_of_known_splicesites	FALSE	canonical	3	148	junction_2	18.3726850393609	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTGACTCTTTCTGAG	NA	False	NA	-8	True	AATAAA	-15	NA	77801665	77719192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_77723025_77730763_77730891_77761595_77762381_77801420
ENSMUSG00000047473.15_0	chr7	+	2826	5	FSM	ENSMUSG00000047473.15	ENSMUST00000032803.12	3558	5	27	705	2	-705	multi-exon	FALSE	canonical	3	6	junction_3	9.39414711402797	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACTCTCCGAGTGACTG	NA	False	NA	NA	False	NA	NA	NA	29483449	29493422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29484327_29485643_29485729_29487473_29487601_29488762_29488862_29491784
ENSMUSG00000047473.15_12	chr7	+	1092	1	ISM	ENSMUSG00000047473.15	ENSMUST00000032803.12	3558	5	8896	717	8810	-717	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTAGCCTGCATAAACTC	NA	False	NA	NA	False	NA	NA	NA	29492318	29493410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_29492300_29493400
ENSMUSG00000047473.15_2	chr7	+	2856	5	NIC	ENSMUSG00000047473.15	novel	3558	5	NA	NA	6	-712	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	9.65336728815391	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTGCATAAACTCTCCGA	NA	False	NA	NA	False	NA	NA	NA	29483453	29493415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29484327_29485599_29485729_29487473_29487601_29488765_29488862_29491784
ENSMUSG00000047473.15_3	chr7	+	1552	4	ISM	ENSMUSG00000047473.15	ENSMUST00000032803.12	3558	5	16	4913	-9	-2123	5prime_fragment	FALSE	canonical	3	6	junction_3	9.62635271879577	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTATTTGTATGGTTGC	NA	False	NA	NA	False	AAGAAA	-11	NA	29483438	29489214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_29484327_29485643_29485729_29487473_29487601_29488762
ENSMUSG00000047473.15_4	chr7	+	3368	5	NIC	ENSMUSG00000047473.15	novel	3558	5	NA	NA	-3	-165	combination_of_known_junctions	FALSE	canonical	2	9	junction_4	7.96868872525461	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29483444	29493962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29484327_29485643_29485729_29487473_29487601_29488765_29488862_29491784
ENSMUSG00000047473.15_5	chr7	+	2700	4	NIC	ENSMUSG00000047473.15	novel	3558	5	NA	NA	1	-705	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	9.03081145609604	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACTCTCCGAGTGACTG	NA	False	NA	NA	False	NA	NA	NA	29483448	29493422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29484327_29485643_29485729_29488762_29488862_29491784
ENSMUSG00000047473.15_6	chr7	+	1536	4	NIC	ENSMUSG00000047473.15	novel	3707	4	NA	NA	2	-2125	combination_of_known_junctions	FALSE	canonical	2	12	junction_3	6.97614984548545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTTTTATTTGTATGGTT	NA	False	NA	NA	False	AAGAAA	-9	NA	29483449	29489212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29484327_29485643_29485729_29487473_29487601_29488765
ENSMUSG00000047473.15_7	chr7	+	3573	5	NIC	ENSMUSG00000047473.15	novel	3558	5	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	10.1827059272082	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTAGTGATGTTAAACATG	NA	False	NA	NA	False	AATAAA	-12	NA	29483447	29494123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29484327_29485599_29485729_29487473_29487601_29488762_29488862_29491784
ENSMUSG00000047473.15_9	chr7	+	1577	4	FSM	ENSMUSG00000047473.15	ENSMUST00000126504.2	3707	4	2	2128	2	-2128	multi-exon	FALSE	canonical	1	3	junction_1	10.7806410858642	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTAGTTTTATTTGTATG	NA	False	NA	NA	False	AAGAAA	-6	NA	29483449	29489209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29484327_29485599_29485729_29487473_29487601_29488765
ENSMUSG00000047485.7_0	chrX	+	3496	1	FSM	ENSMUSG00000047485.7	ENSMUST00000087157.5	1935	1	-502	-1059	-502	1059	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATTAAGAGCTGGATTT	NA	False	NA	NA	False	AATAAA	-18	NA	156600928	156604424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_156600900_156604400
ENSMUSG00000047492.6_0	chr10	-	1958	2	FSM	ENSMUSG00000047492.6	ENSMUST00000059718.6	5319	2	2574	787	2574	-787	multi-exon	FALSE	canonical	3	17	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAATTGTGTAAGGGGTT	8020	False	NA	NA	False	AATAAA	-20	NA	127187706	127185512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127186881_127187116
ENSMUSG00000047492.6_2	chr10	-	198	1	ISM	ENSMUSG00000047492.6	ENSMUST00000059718.6	5319	2	1540	3817	1540	-3817	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACAAAGCCTGGATGAC	7	True	NA	NA	False	NA	NA	NA	127188740	127188542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127188500_127188700
ENSMUSG00000047501.4_0	chr5	-	1798	1	FSM	ENSMUSG00000047501.4	ENSMUST00000051401.4	1816	1	8	10	8	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	982	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAAGGTTTGGGCTGTTC	NA	False	NA	-19	True	AATAAA	-15	NA	134975780	134973982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134974000_134975800
ENSMUSG00000047502.15_4	chr4	-	2603	17	ISM	ENSMUSG00000047502.15	ENSMUST00000106770.8	4346	24	19357	1	-25	-1	3prime_fragment	FALSE	canonical	0	0	junction_8	1.86140907647943	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGATGCGTGCGGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	106565770	106537614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_106538080_106539056_106539120_106541105_106541209_106547411_106547535_106548170_106548327_106548711_106548892_106549473_106549615_106551511_106551627_106552187_106552326_106556918_106557110_106557323_106557463_106559679_106559835_106560211_106560389_106561327_106561441_106564655_106564792_106564947_106565053_106565667
ENSMUSG00000047514.7_0	chr10	+	2659	1	FSM	ENSMUSG00000047514.7	ENSMUST00000061372.7	3086	1	36	391	36	-391	mono-exon	FALSE	NA	NA	NA	NA	NA	776	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATGGCTTTTTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	34158221	34160880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_34158200_34160900
ENSMUSG00000047515.9_0	chr6	+	746	1	FSM	ENSMUSG00000047515.9	ENSMUST00000205058.2	5539	1	-2	4795	-2	-4795	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGATTGGCCAATTGTT	671	False	NA	NA	False	AATAAA	-16	NA	136804621	136805367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_136804600_136805400
ENSMUSG00000047534.18_0	chr12	-	4011	14	FSM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	2	4	0	-4	multi-exon	FALSE	canonical	3	216	junction_12	54.2140181439599	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATATTTGTTTCTGGGTT	NA	False	NA	-9	True	AATAAA	-14	NA	65219352	65179511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
ENSMUSG00000047534.18_2	chr12	-	3383	13	NIC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	3	78	junction_12	86.8969296862029	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATATTTGTTTCTGGGTT	NA	False	NA	-9	True	AATAAA	-14	NA	65219350	65179511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
ENSMUSG00000047534.18_8	chr12	-	4987	13	FSM	ENSMUSG00000047534.18	ENSMUST00000140391.8	5016	13	26	3	0	-3	multi-exon	FALSE	canonical	3	216	junction_11	56.3414072123395	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATATTTGTTTCTGGGTTT	NA	False	NA	-8	True	AATAAA	-15	NA	65219352	65179510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
ENSMUSG00000047539.10_0	chr1	-	2830	5	FSM	ENSMUSG00000047539.10	ENSMUST00000051431.10	4925	5	4	2091	4	-5	multi-exon	FALSE	canonical	3	148	junction_1	16.5604951616792	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGATTTGTCAGCAAGG	NA	False	NA	-6	True	AATAAA	-10	NA	182169179	182142757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_182144851_182145374_182145571_182153818_182153958_182157438_182157549_182168887
ENSMUSG00000047539.10_2	chr1	-	2683	1	ISM	ENSMUSG00000047539.10	ENSMUST00000051431.10	4925	5	24833	1001	1602	-1001	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTAAAAAGGTGTCACAAC	NA	False	NA	-37	True	AATAAA	-3	NA	182144350	182141667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_182141700_182144400
ENSMUSG00000047547.15_0	chr13	-	1046	1	ISM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	17348	550	5165	-550	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACCTGGCTGCCTTAG	8105	False	NA	NA	False	NA	NA	NA	54741809	54740763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_54740800_54741800
ENSMUSG00000047547.15_1	chr13	-	1031	5	FSM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	2	1153	2	-16	multi-exon	FALSE	canonical	3	406	junction_1	26.0708170182678	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGGTGTCAGCGCTCAG	7407	False	NA	-4	True	NA	NA	NA	54759155	54741366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_54741856_54746534_54746647_54746856_54746975_54754456_54754504_54758890
ENSMUSG00000047554.15_0	chr7	-	2335	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	195	1310	3	-12	multi-exon	FALSE	canonical	3	346	junction_6	24.644133852366	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACTGATCAATATTGTAT	NA	False	NA	-17	True	AATACA	-9	NA	109585463	109572703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
ENSMUSG00000047554.15_4	chr7	-	2858	6	NIC	ENSMUSG00000047554.15	novel	3840	7	NA	NA	-36	-5	intron_retention	TRUE	canonical	3	346	junction_5	24.5324275195098	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATATTGTATCTGTCTT	NA	False	NA	-10	True	AATACA	-16	NA	109585405	109572696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_109574159_109575801_109575941_109577916_109578690_109580195_109580325_109581862_109581981_109585168
ENSMUSG00000047554.15_8	chr7	-	863	1	ISM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	12095	1307	4573	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGATCAATATTGTATCTG	NA	False	NA	-14	True	AATACA	-12	NA	109573563	109572700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_109572700_109573600
ENSMUSG00000047557.3_0	chr3	-	1090	6	FSM	ENSMUSG00000047557.3	ENSMUST00000058981.3	1112	6	21	1	21	-1	multi-exon	FALSE	canonical	3	160	junction_4	5.56417109729742	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGAGTCTAATTGCATTGT	NA	False	NA	-4	True	AATAAA	-17	NA	67371238	67365331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_67365661_67365926_67365990_67368254_67368392_67368644_67368823_67369691_67369755_67370918
ENSMUSG00000047557.3_2	chr3	-	2858	4	ISM	ENSMUSG00000047557.3	ENSMUST00000058981.3	1112	6	49	736	49	-733	5prime_fragment	FALSE	canonical	3	160	junction_2	2.86744175568088	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGCAAAAAAGAAATTAAG	NA	False	NA	NA	False	AATAAA	-9	NA	67371210	67366066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_67368392_67368644_67368823_67369691_67369755_67370918
ENSMUSG00000047557.3_3	chr3	-	3375	5	NIC	ENSMUSG00000047557.3	novel	1112	6	NA	NA	1	-1	intron_retention	FALSE	canonical	3	160	junction_3	6.02079728939615	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGAGTCTAATTGCATTGT	NA	False	NA	-4	True	AATAAA	-17	NA	67371258	67365331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_67365661_67365926_67368392_67368644_67368823_67369691_67369755_67370918
ENSMUSG00000047557.3_4	chr3	-	3605	4	NIC	ENSMUSG00000047557.3	novel	1112	6	NA	NA	24	-1	intron_retention	FALSE	canonical	3	160	junction_2	6.94422221866655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGAGTCTAATTGCATTGT	NA	False	NA	-4	True	AATAAA	-17	NA	67371235	67365331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_67365661_67365926_67368823_67369691_67369755_67370918
ENSMUSG00000047583.10_0	chr3	-	4374	6	FSM	ENSMUSG00000047583.10	ENSMUST00000052774.8	4490	6	15	101	15	-12	multi-exon	FALSE	canonical	3	59	junction_2	5.35163526410386	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCCTAGAATTTTGTCT	NA	False	NA	-10	True	AATAAA	-8	NA	154302717	154282168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_154285929_154293113_154293248_154296720_154296793_154299353_154299453_154300090_154300172_154302489
ENSMUSG00000047583.10_2	chr3	-	3393	1	ISM	ENSMUSG00000047583.10	ENSMUST00000052774.8	4490	6	17177	95	14616	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGAATTTTGTCTGTTCTG	NA	False	NA	-4	True	AATAAA	-14	NA	154285555	154282162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_154282200_154285600
ENSMUSG00000047583.10_5	chr3	-	3978	6	NNC	ENSMUSG00000047583.10	novel	488	4	NA	NA	27	3497	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.3744406335545	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAATTGAGTCTGTTTG	NA	False	NA	NA	False	AATAAA	-15	NA	154302705	154289694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_154292913_154292955_154293248_154296720_154296793_154299353_154299453_154300090_154300172_154302489
ENSMUSG00000047586.5_1	chr7	-	1348	6	FSM	ENSMUSG00000047586.5	ENSMUST00000239002.2	1531	6	177	6	177	-6	multi-exon	FALSE	canonical	3	10	junction_1	2.92574776766556	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAACATGTGCTCAGAGG	NA	False	NA	NA	False	AATAAA	-19	NA	28246502	28243026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28243698_28243846_28243986_28244663_28244760_28245580_28245633_28245714_28245778_28246175
ENSMUSG00000047591.6_0	chr15	-	2808	1	FSM	ENSMUSG00000047591.6	ENSMUST00000062002.6	2739	1	-87	18	-87	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTCATTGGAACCTGGC	NA	False	NA	-20	True	AATAAA	-12	NA	75620164	75617356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75617400_75620200
ENSMUSG00000047603.10_0	chr7	+	2627	1	ISM	ENSMUSG00000047603.10	ENSMUST00000056549.9	3373	4	6368	5	6368	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATGAGTTGTTTCTCAT	NA	False	NA	1	True	AATAAA	-9	NA	23840034	23842661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_23840000_23842700
ENSMUSG00000047603.10_1	chr7	+	3420	4	FSM	ENSMUSG00000047603.10	ENSMUST00000056549.9	3373	4	-49	2	-3	-2	multi-exon	TRUE	canonical	3	32	junction_3	6.18241233033047	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGAGTTGTTTCTCATCCT	NA	False	NA	4	True	AATAAA	-12	NA	23833617	23842664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_23833913_23834682_23834741_23836470_23836598_23839724
ENSMUSG00000047603.10_4	chr7	+	3337	3	ISM	ENSMUSG00000047603.10	ENSMUST00000205680.2	1332	5	4	908	4	-908	intron_retention	FALSE	canonical	3	44	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGTTCTTTCTTCTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	23833624	23839461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_23833913_23834682_23834741_23836470
ENSMUSG00000047603.10_9	chr7	+	2730	6	Fusion	ENSMUSG00000047603.10_ENSMUSG00000068962.8	novel	1332	5	NA	NA	2	124	multi-exon	TRUE	canonical	0	0	junction_3	18.7018715640975	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTAGAGTTGCATGCT	NA	False	NA	NA	False	NA	NA	NA	23833622	23881867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_+_23833913_23834682_23834741_23836470_23836598_23875533_23875592_23877174_23877302_23879797
ENSMUSG00000047604.4_0	chr19	-	2123	1	FSM	ENSMUSG00000047604.4	ENSMUST00000059231.4	2161	1	32	6	32	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATGGTCTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	41836539	41834416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_41834400_41836500
ENSMUSG00000047613.11_0	chr4	+	1065	4	FSM	ENSMUSG00000047613.11	ENSMUST00000058393.9	1098	4	20	13	2	-6	multi-exon	FALSE	canonical	3	743	junction_1	42.5519290592879	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTTTAAAGAAATACTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	154041713	154046369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_154041780_154044205_154044320_154044987_154045450_154045946
ENSMUSG00000047613.11_1	chr4	+	1555	3	ISM	ENSMUSG00000047613.11	ENSMUST00000058393.9	1098	4	22	18	4	-11	intron_retention	FALSE	canonical	3	743	junction_1	52	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATACTTTTAAAGAAATA	NA	False	NA	NA	False	AATAAA	-11	NA	154041715	154046364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_154041780_154044205_154044320_154044987
ENSMUSG00000047613.11_2	chr4	+	1058	4	FSM	ENSMUSG00000047613.11	ENSMUST00000147826.2	940	4	-9	-109	2	-6	multi-exon	FALSE	canonical	3	119	junction_1	332.870345129551	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTTTAAAGAAATACTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	154041713	154046369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_154041780_154044212_154044320_154044987_154045450_154045946
ENSMUSG00000047613.11_3	chr4	+	3482	3	NIC	ENSMUSG00000047613.11	novel	1098	4	NA	NA	-5	-11	intron_retention	FALSE	canonical	3	801	junction_2	23	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATACTTTTAAAGAAATA	NA	False	NA	NA	False	AATAAA	-11	NA	154041717	154046364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_154044320_154044987_154045450_154045946
ENSMUSG00000047617.12_1	chr2	-	875	6	FSM	ENSMUSG00000047617.12	ENSMUST00000125710.8	917	6	88	-46	7	0	multi-exon	FALSE	canonical	3	10	junction_3	2.82842712474619	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTGAGTTGTGAAGATT	5410	False	NA	-7	True	AATAAA	-29	NA	25350932	25349496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666
ENSMUSG00000047632.12_0	chr19	-	1518	1	ISM	ENSMUSG00000047632.12	ENSMUST00000238948.2	1756	2	501	31	501	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATTGGATTTAAAGAGTT	NA	False	NA	NA	False	ATTAAA	-15	NA	36896498	36894980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_36895000_36896500
ENSMUSG00000047632.12_1	chr19	-	1725	2	FSM	ENSMUSG00000047632.12	ENSMUST00000057337.9	1772	2	-1	48	-1	-48	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAAAAAACTG	NA	False	NA	NA	False	TTTAAA	-44	NA	36897016	36894997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_36896678_36896971
ENSMUSG00000047635.7_0	chr5	+	1570	3	FSM	ENSMUSG00000047635.7	ENSMUST00000077376.3	1677	3	63	44	63	-44	multi-exon	FALSE	canonical	3	74	junction_1	7.5	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAACAAACAACAA	5461	False	NA	-27	True	NA	NA	NA	124466223	124479863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124466293_124476689_124476999_124478671
ENSMUSG00000047648.14_0	chr10	+	3925	3	FSM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	44	1091	44	-1091	multi-exon	FALSE	canonical	3	746	junction_2	70.5	1518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTTTTGCCTCACCTGT	7636	False	NA	6	True	AGTAAA	-9	NA	11157117	11172705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_11157245_11165263_11167317_11170960
ENSMUSG00000047648.14_23	chr10	+	2936	2	ISM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	9071	1072	8814	-1072	3prime_fragment	FALSE	canonical	3	746	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTAACTTACAAGGATT	NA	False	NA	25	True	AGTAAA	-28	NA	11166144	11172724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_11167317_11170960
ENSMUSG00000047649.10_10	chr7	-	1465	1	ISM	ENSMUSG00000047649.10	ENSMUST00000047036.10	2239	3	1642	361	1642	-361	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGCCTGTTTGGAATGG	3800	False	NA	-23	True	ATTAAA	-10	NA	19091764	19090299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19090300_19091800
ENSMUSG00000047649.10_11	chr7	-	2404	2	FSM	ENSMUSG00000047649.10	ENSMUST00000176333.2	489	2	48	-1963	46	-862	multi-exon	FALSE	canonical	3	248	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	2204	False	NA	NA	False	NA	NA	NA	19093360	19090800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19093157_19093312
ENSMUSG00000047649.10_4	chr7	-	2172	4	NNC	ENSMUSG00000047649.10	novel	2239	3	NA	NA	15	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	112.490987293304	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAACAAACCAACAAA	2173	False	NA	-33	True	NA	NA	NA	19093391	19089952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_19090087_19090124_19091942_19093014_19093157_19093312
ENSMUSG00000047649.10_7	chr7	-	1856	3	FSM	ENSMUSG00000047649.10	ENSMUST00000047036.10	2239	3	22	361	22	-361	multi-exon	FALSE	canonical	3	228	junction_1	10	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGCCTGTTTGGAATGG	2180	False	NA	-23	True	ATTAAA	-10	NA	19093384	19090299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19091942_19093014_19093157_19093312
ENSMUSG00000047649.10_8	chr7	-	1760	2	ISM	ENSMUSG00000047649.10	ENSMUST00000047036.10	2239	3	274	361	274	-361	3prime_fragment	FALSE	canonical	3	228	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGCCTGTTTGGAATGG	2432	False	NA	-23	True	ATTAAA	-10	NA	19093132	19090299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19091942_19093014
ENSMUSG00000047656.10_0	chr19	+	1086	7	FSM	ENSMUSG00000047656.10	ENSMUST00000088223.7	1103	7	-3	20	-3	-18	multi-exon	FALSE	canonical	3	25	junction_3	9.59166304662544	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCCAGCTTCAAACCAG	NA	False	NA	18	True	AATAAA	-40	NA	6973536	6976394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976259
ENSMUSG00000047656.10_1	chr19	+	2470	4	NIC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	-7	-5	intron_retention	FALSE	canonical	3	35	junction_3	3.68178700572909	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGGATTTGTGGTTCC	NA	False	NA	31	True	ATTAAA	-37	NA	6973532	6976407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6973893_6974063_6975735_6975876_6975934_6976025
ENSMUSG00000047656.10_10	chr19	+	2258	6	NIC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	-7	-5	intron_retention	FALSE	canonical	3	25	junction_2	9.01997782702374	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGGATTTGTGGTTCC	NA	False	NA	31	True	ATTAAA	-37	NA	6973532	6976407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6973893_6974063_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976259
ENSMUSG00000047656.10_3	chr19	+	1033	7	NNC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	0	-20	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	14.8174071805952	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGTCCAGCTTCAAACC	NA	False	NA	16	True	AATAAA	-38	NA	6973539	6976392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976073_6976137_6976259
ENSMUSG00000047656.10_4	chr19	+	2340	5	NIC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	0	-5	intron_retention	FALSE	canonical	3	35	junction_3	6.21992765231236	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGGATTTGTGGTTCC	NA	False	NA	31	True	ATTAAA	-37	NA	6973539	6976407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_6973893_6974063_6975735_6975876_6975934_6976025_6976137_6976259
ENSMUSG00000047656.10_5	chr19	+	892	6	FSM	ENSMUSG00000047656.10	ENSMUST00000237234.2	972	6	42	38	1	-38	multi-exon	FALSE	canonical	3	11	junction_2	13.8650640099496	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTGAAACAGACACAGAAAG	NA	False	NA	-2	True	AATAAA	-20	NA	6973540	6976374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6973893_6974063_6974146_6975559_6975735_6975876_6975934_6976025_6976137_6976259
ENSMUSG00000047658.7_0	chr19	+	2465	3	FSM	ENSMUSG00000047658.7	ENSMUST00000061169.7	2421	3	-45	1	-45	-1	multi-exon	FALSE	canonical	2	5	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGGGTGTATGTCAAT	NA	False	NA	NA	False	AATAAA	-13	NA	5348313	5358765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5348529_5352463_5352700_5356751
ENSMUSG00000047669.9_0	chr10	+	2114	2	FSM	ENSMUSG00000047669.9	ENSMUST00000063138.8	2140	2	17	9	17	-9	multi-exon	FALSE	canonical	2	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAATTATTTATAAAGCT	NA	False	NA	NA	False	AATAAA	-14	NA	55983029	55992967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_55983126_55990949
ENSMUSG00000047669.9_1	chr10	+	1743	1	ISM	ENSMUSG00000047669.9	ENSMUST00000063138.8	2140	2	8212	9	214	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAATTATTTATAAAGCT	NA	False	NA	NA	False	AATAAA	-14	NA	55991224	55992967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_55991200_55993000
ENSMUSG00000047674.3_0	chr3	-	1596	1	FSM	ENSMUSG00000047674.3	ENSMUST00000057860.3	2352	1	546	210	546	-210	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAGTAGATTTTTGAT	NA	False	NA	-4	True	AATAAA	-12	NA	140917570	140915974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_140916000_140917600
ENSMUSG00000047675.16_0	chr4	-	689	6	FSM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	157	14	-2	-7	multi-exon	FALSE	canonical	3	8358	junction_5	1894.95893359197	2362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTATGCTGTCTAGGTG	NA	False	NA	-27	True	AATAAA	-16	NA	117013283	117011037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
ENSMUSG00000047675.16_4	chr4	-	661	5	ISM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	565	14	391	-7	3prime_fragment	FALSE	canonical	3	11588	junction_2	904.937705038308	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTATGCTGTCTAGGTG	NA	False	NA	-27	True	AATAAA	-16	NA	117012875	117011037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767
ENSMUSG00000047676.7_0	chr3	-	1005	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	-55	-65	-55	65	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	149779234	149778229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_149778200_149779200
ENSMUSG00000047694.13_17	chrX	+	1950	1	ISM	ENSMUSG00000047694.13	ENSMUST00000054697.7	5211	7	8428	879	7982	-879	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCATCCTTTCAAGGT	NA	False	NA	4	True	TTTAAA	-41	NA	97989794	97991744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_97989800_97991700
ENSMUSG00000047694.13_2	chrX	+	3883	7	FSM	ENSMUSG00000047694.13	ENSMUST00000054697.7	5211	7	448	880	2	-880	multi-exon	FALSE	canonical	3	206	junction_6	19.4736288919714	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATTCATCCTTTCAAGG	NA	False	NA	3	True	TTTAAA	-40	NA	97981814	97991743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083_97987242_97988478
ENSMUSG00000047702.3_0	chr11	+	88	1	ISM	ENSMUSG00000047702.3	ENSMUST00000215226.2	3034	4	8676	716	1447	599	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAATTGCCTTAGCTCCG	NA	False	NA	NA	False	NA	NA	NA	49336126	49336214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_49336100_49336200
ENSMUSG00000047710.9_0	chr8	+	3949	2	FSM	ENSMUSG00000047710.9	ENSMUST00000051870.8	4013	2	58	6	-5	-6	multi-exon	FALSE	canonical	3	209	junction_1	0	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACATCTTCATGTGTACT	NA	False	NA	11	True	ATTAAA	-13	NA	13919698	13931633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13919812_13927797
ENSMUSG00000047710.9_1	chr8	+	3975	2	FSM	ENSMUSG00000047710.9	ENSMUST00000128557.3	3977	2	-4	6	-4	-6	multi-exon	FALSE	canonical	2	6	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACATCTTCATGTGTACT	NA	False	NA	11	True	ATTAAA	-13	NA	13919699	13931633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13919839_13927797
ENSMUSG00000047710.9_2	chr8	+	2876	1	ISM	ENSMUSG00000047710.9	ENSMUST00000051870.8	4013	2	9116	7	9053	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAACATCTTCATGTGTAC	NA	False	NA	10	True	ATTAAA	-12	NA	13928756	13931632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_13928800_13931600
ENSMUSG00000047712.9_0	chr10	-	4222	8	FSM	ENSMUSG00000047712.9	ENSMUST00000061601.9	4228	8	5	1	5	-1	multi-exon	FALSE	canonical	1	9	junction_7	3.52252228741084	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCTTATTTTTTCTGTTA	NA	False	NA	NA	False	AATAAA	-16	NA	8394584	8080573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_8083435_8121666_8121825_8123852_8123951_8173819_8173974_8183171_8183252_8205831_8205988_8266651_8266696_8393913
ENSMUSG00000047712.9_1	chr10	-	2574	1	ISM	ENSMUSG00000047712.9	ENSMUST00000219116.2	3670	7	94913	0	94913	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTCTTCTTTTTTAAC	NA	False	NA	NA	False	ATTAAA	-14	NA	8083093	8080519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_8080500_8083100
ENSMUSG00000047712.9_6	chr10	-	3417	6	ISM	ENSMUSG00000047712.9	ENSMUST00000061601.9	4228	8	188692	1	-27891	-1	3prime_fragment	FALSE	canonical	3	12	junction_3	2.28035085019828	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCTTATTTTTTCTGTTA	NA	False	NA	NA	False	AATAAA	-16	NA	8205897	8080573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_8083435_8121666_8121825_8123852_8123951_8173819_8173974_8183171_8183252_8205831
ENSMUSG00000047714.15_0	chr16	-	2340	6	FSM	ENSMUSG00000047714.15	ENSMUST00000060188.14	4078	6	22	1716	22	-1716	multi-exon	FALSE	canonical	3	769	junction_1	115.541161496672	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAAAGTAGGAAGA	NA	False	NA	-37	True	TTTAAA	-23	NA	31094073	31072070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31073552_31077154_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
ENSMUSG00000047714.15_24	chr16	-	1142	5	FSM	ENSMUSG00000047714.15	ENSMUST00000115233.2	958	5	-263	79	22	-79	multi-exon	FALSE	canonical	3	993	junction_1	34.2746261832277	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTTTTTGTTGTTGTTT	NA	False	NA	-6	True	ATTAAA	-15	NA	31094073	31076871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
ENSMUSG00000047714.15_4	chr16	-	1049	1	ISM	ENSMUSG00000047714.15	ENSMUST00000060188.14	4078	6	20999	1693	20714	-1693	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCTGTTAGAAGAATGTG	8305	False	NA	-14	True	AATAAA	-16	NA	31073096	31072047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_31072000_31073100
ENSMUSG00000047719.3_2	chr4	-	2963	2	FSM	ENSMUSG00000047719.3	ENSMUST00000051633.3	2992	2	21	8	11	-8	multi-exon	FALSE	canonical	3	93	junction_1	0	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACGTATGTCAGTGGCTT	NA	False	NA	-8	True	ATTAAA	-8	NA	148529207	148518959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148521100_148528384
ENSMUSG00000047719.3_3	chr4	-	2447	3	NNC	ENSMUSG00000047719.3	novel	576	3	NA	NA	10	-10	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	31.5	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACGTATGTCAGTGGC	NA	False	NA	-10	True	ATTAAA	-6	NA	148529208	148518961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_148521100_148528384_148528587_148529101
ENSMUSG00000047719.3_5	chr4	-	2561	3	FSM	ENSMUSG00000047719.3	ENSMUST00000156686.2	576	3	8	-1993	8	-1	multi-exon	FALSE	canonical	2	6	junction_2	43.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCAGTGGCTTTGTTTCT	NA	False	NA	-1	True	ATTAAA	-15	NA	148529210	148518952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148521100_148528384_148528587_148528998
ENSMUSG00000047719.3_6	chr4	-	1524	1	ISM	ENSMUSG00000047719.3	ENSMUST00000051633.3	2992	2	8745	8	8735	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACGTATGTCAGTGGCTT	NA	False	NA	-8	True	ATTAAA	-8	NA	148520483	148518959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_148519000_148520500
ENSMUSG00000047721.9_0	chr7	+	366	3	FSM	ENSMUSG00000047721.9	ENSMUST00000130498.2	1266	3	535	365	-2	0	multi-exon	FALSE	canonical	3	2284	junction_2	148	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCTGGTCTCAGTGTGC	1146	False	NA	18	True	ATTAAA	-13	NA	126295142	126295865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126295272_126295354_126295453_126295726
ENSMUSG00000047728.14_1	chr15	+	2470	5	NIC	ENSMUSG00000047728.14	novel	1498	5	NA	NA	0	1053	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	2.48746859276655	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGCTAAAATAGAATGATC	1232	False	NA	NA	False	NA	NA	NA	75088226	75095563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_75088262_75088532_75088604_75089563_75089681_75092469_75092640_75093486
ENSMUSG00000047728.14_3	chr15	+	2492	5	FSM	ENSMUSG00000047728.14	ENSMUST00000185307.7	758	5	-35	-1699	-35	988	multi-exon	FALSE	canonical	0	0	junction_1	2.73861278752583	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATCAGGCTGAGTTGAT	1195	False	NA	NA	False	NA	NA	NA	75088189	75095498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_75088262_75088532_75088604_75089563_75089681_75092469_75092690_75093486
ENSMUSG00000047731.18_0	chr19	+	3894	5	FSM	ENSMUSG00000047731.18	ENSMUST00000099376.11	3911	5	18	-1	8	1	multi-exon	FALSE	canonical	3	116	junction_1	18.7666592658363	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAATCTCCTGCCGCTCC	NA	False	NA	18	True	AATAAA	-19	NA	46587570	46645822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46587733_46595150_46595199_46632791_46632895_46640912_46641075_46642403
ENSMUSG00000047731.18_15	chr19	+	2358	1	ISM	ENSMUSG00000047731.18	ENSMUST00000138302.9	3900	4	55942	6	31625	1	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAATCTCCTGCCGCTCC	7637	False	NA	18	True	AATAAA	-19	NA	46643464	46645822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46643500_46645800
ENSMUSG00000047731.18_2	chr19	+	3863	4	FSM	ENSMUSG00000047731.18	ENSMUST00000138302.9	3900	4	31	6	1	1	multi-exon	FALSE	canonical	3	65	junction_1	42.0898509804389	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAATCTCCTGCCGCTCC	NA	False	NA	18	True	AATAAA	-19	NA	46587553	46645822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46587733_46632791_46632895_46640912_46641075_46642403
ENSMUSG00000047735.15_0	chr6	-	5177	2	FSM	ENSMUSG00000047735.15	ENSMUST00000120087.6	5330	2	145	8	145	-8	multi-exon	FALSE	canonical	3	6	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTAAATGACTTTTCTAA	3	True	NA	NA	False	AATAAA	-12	NA	3399427	3372264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_3377282_3399267
ENSMUSG00000047735.15_1	chr6	-	2782	1	ISM	ENSMUSG00000047735.15	ENSMUST00000120087.6	5330	2	24526	8	9960	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTAAATGACTTTTCTAA	6961	False	NA	NA	False	AATAAA	-12	NA	3375046	3372264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_3372300_3375000
ENSMUSG00000047749.3_0	chr6	-	3340	1	ISM	ENSMUSG00000047749.3	ENSMUST00000058524.3	6536	4	8521	3	8521	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTATGGTATGTATAGTG	NA	False	NA	-10	True	AATAAA	-11	NA	38267673	38264333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38264300_38267700
ENSMUSG00000047749.3_1	chr6	-	6533	4	FSM	ENSMUSG00000047749.3	ENSMUST00000058524.3	6536	4	0	3	0	-3	multi-exon	FALSE	canonical	3	137	junction_1	7.31816613336672	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTATGGTATGTATAGTG	NA	False	NA	-10	True	AATAAA	-11	NA	38276194	38264333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_38270073_38271992_38272255_38274886_38275023_38275798
ENSMUSG00000047751.10_0	chr7	+	1189	2	FSM	ENSMUSG00000047751.10	ENSMUST00000168457.3	1227	2	34	4	34	-4	multi-exon	FALSE	canonical	3	805	junction_1	0	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCCTGTGAATGAATTC	NA	False	NA	NA	False	AATAAA	-16	NA	139523735	139525021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_139524343_139524439
ENSMUSG00000047751.10_2	chr7	+	1270	1	NIC	ENSMUSG00000047751.10	novel	1227	2	NA	NA	51	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCCTGTGAATGAATTCG	NA	False	NA	NA	False	AATAAA	-17	NA	139523752	139525022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_139523800_139525000
ENSMUSG00000047757.18_0	chrX	+	2843	9	FSM	ENSMUSG00000047757.18	ENSMUST00000167446.8	2953	9	109	1	-11	-1	multi-exon	FALSE	canonical	3	98	junction_5	7.72981241687015	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGTCTTGTTTTCTTTTA	NA	False	NA	NA	False	ATTAAA	-16	NA	163763696	163780264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_163763807_163765432_163766450_163769555_163769709_163770700_163770794_163774540_163774685_163775726_163775891_163778339_163778768_163778882_163779118_163779765
ENSMUSG00000047757.18_17	chrX	+	2003	8	ISM	ENSMUSG00000047757.18	ENSMUST00000167446.8	2953	9	2576	0	2456	0	3prime_fragment	FALSE	canonical	3	98	junction_4	6.20730313782869	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTTGTTTTCTTTTAC	NA	False	NA	NA	False	ATTAAA	-17	NA	163766163	163780265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_163766450_163769555_163769709_163770700_163770794_163774540_163774685_163775726_163775891_163778339_163778768_163778882_163779118_163779765
ENSMUSG00000047757.18_3	chrX	+	2965	8	NIC	ENSMUSG00000047757.18	novel	2953	9	NA	NA	-17	0	intron_retention	TRUE	canonical	3	98	junction_5	7.51596939312337	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTTGTTTTCTTTTAC	NA	False	NA	NA	False	ATTAAA	-17	NA	163763690	163780265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_163763807_163765432_163766450_163769555_163769709_163770700_163770794_163774540_163774685_163775726_163775891_163778339_163779118_163779765
ENSMUSG00000047759.7_0	chr11	+	2183	1	Genic_Genomic	ENSMUSG00000047759.7	novel	NA	NA	NA	NA	-144	-85471	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTGGTTTGTGGTAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	64326013	64328196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_64326000_64328200
ENSMUSG00000047766.16_0	chr9	-	2823	17	FSM	ENSMUSG00000047766.16	ENSMUST00000065603.12	3017	17	184	10	-71	0	multi-exon	FALSE	canonical	1	5	junction_10	6.23372881989584	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTCCAGTTTG	3679	False	NA	NA	False	AATAAA	-11	NA	60595257	60494521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60587787_60587986_60592317_60592406_60594421_60594479_60595094
ENSMUSG00000047766.16_1	chr9	-	2785	16	FSM	ENSMUSG00000047766.16	ENSMUST00000114034.9	2779	16	-20	14	-14	-4	multi-exon	FALSE	canonical	1	5	junction_10	6.23965811029205	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTTAAAAAAAAAAGTCCAG	3515	False	NA	NA	False	AATAAA	-7	NA	60595421	60494525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60592317_60592406_60594421_60594479_60595094
ENSMUSG00000047766.16_8	chr9	-	2015	9	ISM	ENSMUSG00000047766.16	ENSMUST00000053171.14	3086	10	44	18067	44	0	5prime_fragment	FALSE	canonical	3	10	junction_2	5.65132727772866	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTCCAGTTTG	NA	False	NA	NA	False	AATAAA	-11	NA	60557040	60494521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762
ENSMUSG00000047767.18_0	chr7	-	1987	1	ISM	ENSMUSG00000047767.18	ENSMUST00000120267.9	6459	18	14749	32	3120	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGATGTTAGCTTCAATTT	3415	False	NA	NA	False	NA	NA	NA	100936546	100934559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_100934600_100936500
ENSMUSG00000047767.18_1	chr7	-	2063	17	FSM	ENSMUSG00000047767.18	ENSMUST00000122116.8	2083	17	20	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	7.54750579661917	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGCCTCTTTGAAGCA	8414	False	NA	-2	True	NA	NA	NA	100951258	100938823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100940800_100941085_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100945327_100945442_100945714_100945781_100945963_100946216_100946366_100946441_100948212_100948316_100949318_100949419_100951107
ENSMUSG00000047767.18_11	chr7	-	2095	18	FSM	ENSMUSG00000047767.18	ENSMUST00000120267.9	6459	18	48	4316	9	-11	multi-exon	FALSE	canonical	2	4	junction_10	9.70606060442378	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACTGTATCTAAGCCG	8425	False	NA	-22	True	TTTAAA	-27	NA	100951247	100938843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100940800_100941085_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100944065_100944129_100945327_100945442_100945714_100945781_100945963_100946216_100946366_100946441_100948212_100948316_100949318_100949419_100951107
ENSMUSG00000047767.18_17	chr7	-	1409	13	ISM	ENSMUSG00000047767.18	ENSMUST00000122116.8	2083	17	5290	-1	1	1	3prime_fragment	FALSE	canonical	3	10	junction_10	7.1336448530109	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCCTCTTTGAAGCAT	9056	False	NA	-1	True	NA	NA	NA	100945988	100938822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100940800_100941085_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100945327_100945442_100945714_100945781_100945963
ENSMUSG00000047767.18_30	chr7	-	2347	16	NIC	ENSMUSG00000047767.18	novel	2083	17	NA	NA	1	1	intron_retention	FALSE	canonical	3	10	junction_9	7.29383301152419	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCCTCTTTGAAGCAT	8417	False	NA	-1	True	NA	NA	NA	100951255	100938822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100945327_100945442_100945714_100945781_100945963_100946216_100946366_100946441_100948212_100948316_100949318_100949419_100951107
ENSMUSG00000047767.18_6	chr7	-	1289	11	ISM	ENSMUSG00000047767.18	ENSMUST00000122116.8	2083	17	5866	-1	507	1	3prime_fragment	FALSE	canonical	3	10	junction_10	7.75628777186613	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCCTCTTTGAAGCAT	9632	False	NA	-1	True	NA	NA	NA	100945412	100938822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100940800_100941085_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100945327
ENSMUSG00000047767.18_7	chr7	-	2515	15	NIC	ENSMUSG00000047767.18	novel	2083	17	NA	NA	-6	1	intron_retention	FALSE	canonical	3	10	junction_9	7.50408052260874	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCCTCTTTGAAGCAT	8432	False	NA	-1	True	NA	NA	NA	100951240	100938822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100945327_100945442_100945714_100946216_100946366_100946441_100948212_100948316_100949318_100949419_100951107
ENSMUSG00000047777.10_0	chr4	-	3152	4	FSM	ENSMUSG00000047777.10	ENSMUST00000055688.10	3205	4	54	-1	54	1	multi-exon	FALSE	canonical	3	138	junction_1	6.59966329107444	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCTGTGCCTCCTTAGGT	NA	False	NA	-4	True	AATAAA	-16	NA	152080661	152074088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_152076237_152076526_152077050_152078446_152078549_152080282
ENSMUSG00000047777.10_1	chr4	-	1904	1	ISM	ENSMUSG00000047777.10	ENSMUST00000055688.10	3205	4	4722	0	4722	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCTGTGCCTCCTTAGG	NA	False	NA	-5	True	AATAAA	-15	NA	152075993	152074089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_152074100_152076000
ENSMUSG00000047786.13_0	chr17	+	2985	6	FSM	ENSMUSG00000047786.13	ENSMUST00000115576.3	3116	6	120	11	120	-11	multi-exon	FALSE	canonical	0	0	junction_5	1.74355957741627	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTCTGAATTTGGCTGT	NA	False	NA	1	True	AATAAA	-15	NA	17623053	17679638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_17623289_17647417_17647582_17663909_17664051_17666229_17666326_17674521_17674600_17677367
ENSMUSG00000047789.6_0	chr13	+	2258	15	FSM	ENSMUSG00000047789.6	ENSMUST00000052514.6	8910	15	1	6651	1	-6645	multi-exon	FALSE	canonical	3	26	junction_2	7.31122983038101	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAGAAGTTTCCATGGC	NA	False	NA	10	True	AGTAAA	-16	NA	112797300	112868632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_112797407_112806120_112806266_112822599_112822733_112825806_112825929_112826055_112826120_112826692_112826787_112831774_112831946_112834518_112834579_112837990_112838186_112840071_112840180_112850674_112850782_112859731_112859846_112862580_112862730_112865731_112865822_112868032
ENSMUSG00000047789.6_1	chr13	+	2205	15	NNC	ENSMUSG00000047789.6	novel	8910	15	NA	NA	-7	-6643	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_1	12.5633090662404	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGTTTCCATGGCAT	NA	False	NA	12	True	AGTAAA	-18	NA	112797292	112868634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_112797344_112806120_112806266_112822599_112822733_112825806_112825929_112826055_112826120_112826692_112826787_112831774_112831946_112834518_112834579_112837990_112838186_112840071_112840180_112850674_112850782_112859731_112859846_112862580_112862730_112865731_112865822_112868032
ENSMUSG00000047789.6_14	chr13	+	4370	10	NIC	ENSMUSG00000047789.6	novel	8910	15	NA	NA	-10681	-7003	intron_retention	FALSE	canonical	3	35	junction_5	5.86893895388634	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGCTGTAATTCTAAGT	NA	False	NA	16	True	CATAAA	-18	NA	112826081	112868274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_112826120_112826692_112826787_112831774_112831946_112834518_112834579_112837990_112838186_112840071_112840180_112850674_112850782_112859731_112859846_112862580_112865822_112868032
ENSMUSG00000047789.6_7	chr13	+	4900	14	NIC	ENSMUSG00000047789.6	novel	8910	15	NA	NA	1	-7005	intron_retention	FALSE	canonical	3	26	junction_2	7.50857497963842	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATTGCTGTAATTCTAA	NA	False	NA	14	True	CATAAA	-16	NA	112797300	112868272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_112797407_112806120_112806266_112822599_112822733_112825806_112825929_112826055_112826120_112826692_112826787_112831774_112831946_112834518_112834579_112837990_112838186_112840071_112840180_112850674_112850782_112859731_112859846_112862580_112865822_112868032
ENSMUSG00000047789.6_8	chr13	+	1159	3	FSM	ENSMUSG00000047789.6	ENSMUST00000223674.2	2063	3	-11	915	2	-915	multi-exon	FALSE	canonical	0	0	junction_2	23	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAATGAAACAACTCTTC	NA	False	NA	NA	False	NA	NA	NA	112797303	112809304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_112797407_112806120_112806266_112808393
ENSMUSG00000047797.15_0	chrX	+	1545	2	FSM	ENSMUSG00000047797.15	ENSMUST00000119190.2	1585	2	33	7	33	-7	multi-exon	FALSE	canonical	2	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAGAGGTGTTTTGAG	NA	False	NA	NA	False	ATTAAA	-15	NA	100427374	100429228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_100427449_100427757
ENSMUSG00000047804.16_0	chr11	-	3467	15	FSM	ENSMUSG00000047804.16	ENSMUST00000102650.10	3874	15	33	374	7	-9	multi-exon	FALSE	canonical	3	123	junction_4	17.9790127081323	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAAAATGGTGTCAACT	NA	False	NA	NA	False	NA	NA	NA	61821045	61762506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_61763848_61768132_61768229_61768799_61768853_61777525_61777609_61781063_61781174_61784205_61784380_61787473_61787619_61791135_61791273_61794732_61794857_61795600_61795686_61800673_61800773_61805849_61806408_61806909_61807093_61813607_61813656_61820814
ENSMUSG00000047804.16_7	chr11	-	3264	13	NIC	ENSMUSG00000047804.16	novel	3874	15	NA	NA	2	-8	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	44.4669040473424	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAATGGTGTCAACTT	NA	False	NA	NA	False	NA	NA	NA	61821050	61762505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_61763848_61768132_61768229_61768799_61768853_61777525_61777609_61781063_61781174_61784205_61784380_61787473_61787619_61791135_61791273_61800673_61800773_61805849_61806408_61806909_61807093_61813607_61813656_61820814
ENSMUSG00000047810.10_4	chr19	-	3881	18	FSM	ENSMUSG00000047810.10	ENSMUST00000236028.2	3843	18	-41	3	-41	-3	multi-exon	FALSE	canonical	0	0	junction_4	1.71498585142509	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTCTGTGTCTGCTGGC	8222	False	NA	NA	False	AATAAA	-19	NA	6832647	6821993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6822488_6823714_6823784_6823930_6824138_6824644_6824812_6825003_6825103_6825301_6825448_6825549_6825737_6825908_6826053_6826342_6826600_6827051_6827193_6827269_6827366_6827623_6827742_6827812_6827941_6830309_6831471_6831555_6831693_6831846_6831956_6832109_6832257_6832573
ENSMUSG00000047821.17_1	chr11	+	3703	6	FSM	ENSMUSG00000047821.17	ENSMUST00000055006.12	3906	6	196	7	-13	-7	multi-exon	TRUE	canonical	3	37	junction_4	2.33238075793812	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATATATTTTTTTGCTA	NA	False	NA	NA	False	NA	NA	NA	62711252	62733755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62711826_62719928_62720025_62724804_62725039_62727504_62727671_62728060_62728157_62731217
ENSMUSG00000047821.17_2	chr11	+	3585	7	NIC	ENSMUSG00000047821.17	novel	3574	7	NA	NA	8	-7	combination_of_known_junctions	FALSE	canonical	1	6	junction_1	12.7017059221718	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATATATTTTTTTGCTA	NA	False	NA	NA	False	NA	NA	NA	62711273	62733755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_62711464_62711560_62711826_62719928_62720025_62724804_62725039_62727504_62727671_62728060_62728157_62731217
ENSMUSG00000047824.14_0	chr3	+	3408	2	FSM	ENSMUSG00000047824.14	ENSMUST00000125830.2	688	2	-584	-2136	24	0	multi-exon	FALSE	canonical	3	264	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGGACTCCTTTGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	89337754	89342435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89338484_89339756
ENSMUSG00000047824.14_1	chr3	+	2783	3	FSM	ENSMUSG00000047824.14	ENSMUST00000136573.8	584	3	186	-2385	-24	0	multi-exon	FALSE	canonical	3	4	junction_1	130	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGGACTCCTTTGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	89337706	89342435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89337761_89338433_89338484_89339756
ENSMUSG00000047824.14_2	chr3	+	3019	3	FSM	ENSMUSG00000047824.14	ENSMUST00000060061.11	3198	3	177	2	14	-2	multi-exon	FALSE	canonical	3	239	junction_1	12.5	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAACAAGGACTCCTTTGT	NA	False	NA	NA	False	AATAAA	-14	NA	89337744	89342433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89338037_89338433_89338484_89339756
ENSMUSG00000047824.14_4	chr3	+	2267	1	ISM	ENSMUSG00000047824.14	ENSMUST00000060061.11	3198	3	2601	0	1830	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGGACTCCTTTGTTC	524	False	NA	NA	False	AATAAA	-16	NA	89340168	89342435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_89340200_89342400
ENSMUSG00000047832.10_1	chr12	-	2315	2	FSM	ENSMUSG00000047832.10	ENSMUST00000062092.7	2425	2	99	11	84	-3	multi-exon	FALSE	canonical	3	30	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAATGGAATGTGTTAGG	9745	False	NA	-11	True	ATTAAA	-8	NA	112792910	112783859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_112785733_112792468
ENSMUSG00000047832.10_2	chr12	-	1964	2	FSM	ENSMUSG00000047832.10	ENSMUST00000220899.2	1994	2	28	2	-6	-2	multi-exon	FALSE	canonical	3	463	junction_1	0	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATGGAATGTGTTAGGA	9640	False	NA	-10	True	ATTAAA	-9	NA	112793015	112783858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_112785733_112792925
ENSMUSG00000047832.10_4	chr12	-	1562	1	ISM	ENSMUSG00000047832.10	ENSMUST00000062092.7	2425	2	7591	8	7576	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAATGTGTTAGGAGC	806	False	NA	-8	True	ATTAAA	-11	NA	112785418	112783856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_112783900_112785400
ENSMUSG00000047843.17_0	chr5	+	747	3	FSM	ENSMUSG00000047843.17	ENSMUST00000056578.7	955	3	28	180	28	-1	multi-exon	FALSE	canonical	3	246	junction_1	16.5	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTAGCTTGTTCTGCT	1657	False	NA	-1	True	AATAAA	-14	NA	144192071	144201204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_144192330_144192619_144192723_144200818
ENSMUSG00000047843.17_1	chr5	+	470	2	ISM	ENSMUSG00000047843.17	ENSMUST00000056578.7	955	3	595	180	595	-1	3prime_fragment	FALSE	canonical	3	279	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTAGCTTGTTCTGCT	2224	False	NA	-1	True	AATAAA	-14	NA	144192638	144201204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144192723_144200818
ENSMUSG00000047844.4_0	chrX	+	779	3	FSM	ENSMUSG00000047844.4	ENSMUST00000116527.2	837	3	50	8	50	-8	multi-exon	FALSE	canonical	3	2369	junction_2	964	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCAATATATGCTCAGT	NA	False	NA	NA	False	AATAAA	-9	NA	135039794	135041184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_135039916_135040271_135040349_135040603
ENSMUSG00000047844.4_1	chrX	+	773	3	NNC	ENSMUSG00000047844.4	novel	837	3	NA	NA	53	-8	at_least_one_novel_splicesite	FALSE	canonical	3	216	junction_2	2040.5	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCAATATATGCTCAGT	NA	False	NA	NA	False	AATAAA	-9	NA	135039797	135041184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_135039916_135040271_135040349_135040606
ENSMUSG00000047844.4_2	chrX	+	418	1	ISM	ENSMUSG00000047844.4	ENSMUST00000116527.2	837	3	1022	8	1022	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCAATATATGCTCAGT	NA	False	NA	NA	False	AATAAA	-9	NA	135040766	135041184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_135040800_135041200
ENSMUSG00000047866.21_0	chr8	+	2812	15	FSM	ENSMUSG00000047866.21	ENSMUST00000034141.18	2859	15	44	3	-18	-3	multi-exon	FALSE	canonical	3	174	junction_5	34.038693468775	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAGAATTCTGGTCTCCA	NA	False	NA	NA	False	AATAAA	-9	NA	87350715	87443256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
ENSMUSG00000047866.21_1	chr8	+	2389	13	FSM	ENSMUSG00000047866.21	ENSMUST00000122188.10	2371	13	-21	3	-21	-3	multi-exon	TRUE	non_canonical	0	0	junction_3	73.1522385166715	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAGAATTCTGGTCTCCA	NA	False	NA	NA	False	AATAAA	-9	NA	87350712	87443256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_87351045_87358013_87358249_87360496_87360560_87364600_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
ENSMUSG00000047875.7_0	chr4	+	1740	4	FSM	ENSMUSG00000047875.7	ENSMUST00000094451.4	4900	4	255	2905	255	-2905	multi-exon	FALSE	canonical	2	6	junction_2	1.88561808316413	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAGTCCAGAGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	150172076	150187479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_150172594_150183214_150183429_150186036_150186235_150186668
ENSMUSG00000047878.14_0	chr15	-	2044	3	FSM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	44	4	-1	-4	multi-exon	FALSE	canonical	3	57	junction_2	20.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTAATGCCTCATGGT	2267	False	NA	-12	True	AATAAA	-12	NA	83135931	83110926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83112796_83114714_83114859_83135900
ENSMUSG00000047878.14_1	chr15	-	2124	3	FSM	ENSMUSG00000047878.14	ENSMUST00000164614.3	1974	3	4	-154	2	-4	multi-exon	FALSE	canonical	3	30	junction_2	34	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTAATGCCTCATGGT	2270	False	NA	-12	True	AATAAA	-12	NA	83135928	83110926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83112796_83114714_83114859_83135817
ENSMUSG00000047878.14_4	chr15	-	1491	1	ISM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	23558	4	23513	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTAATGCCTCATGGT	9692	False	NA	-12	True	AATAAA	-12	NA	83112417	83110926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_83110900_83112400
ENSMUSG00000047878.14_5	chr15	-	3985	2	NIC	ENSMUSG00000047878.14	novel	2092	3	NA	NA	-21	-4	intron_retention	FALSE	canonical	3	57	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTAATGCCTCATGGT	2245	False	NA	-12	True	AATAAA	-12	NA	83135953	83110926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_83114859_83135900
ENSMUSG00000047878.14_6	chr15	-	1897	2	NIC	ENSMUSG00000047878.14	novel	2092	3	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTAATGCCTCATGGT	2270	False	NA	-12	True	AATAAA	-12	NA	83135928	83110926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_83112796_83135900
ENSMUSG00000047879.18_1	chr18	-	2267	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	64	2395	4	133	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	1052	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAGGAAAAAGA	4	True	NA	-29	True	NA	NA	NA	10030077	9995460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
ENSMUSG00000047881.15_1	chr5	-	1556	1	ISM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	58267	178	20147	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGCTTGAATGAGCGACA	NA	False	NA	-23	True	AATAAA	-13	NA	64067973	64066417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_64066400_64068000
ENSMUSG00000047881.15_2	chr5	-	3042	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	20	179	20	-11	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGCTTGAATGAGCGAC	NA	False	NA	-24	True	AATAAA	-12	NA	64126220	64066418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
ENSMUSG00000047881.15_4	chr5	-	2766	4	ISM	ENSMUSG00000047881.15	ENSMUST00000087327.13	3093	8	38032	11	-14	-11	3prime_fragment	FALSE	canonical	3	541	junction_1	12.2565175405668	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGCTTGAATGAGCGAC	5408	False	NA	-24	True	AATAAA	-12	NA	64088134	64066418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820
ENSMUSG00000047888.11_10	chr15	+	5707	21	NIC	ENSMUSG00000047888.11	novel	5215	18	NA	NA	-50	-199	combination_of_known_junctions	FALSE	canonical	1	2	junction_5	5.88302643203309	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTTCACTTTTTTCATG	NA	False	NA	8	True	ATTAAA	-14	NA	80682792	80814010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_80683006_80742881_80742970_80748585_80748608_80760517_80760863_80763067_80765408_80768407_80768584_80771159_80771235_80772030_80772077_80773219_80773357_80778529_80778656_80786084_80786217_80786488_80786588_80786720_80786914_80797505_80797644_80800884_80801062_80802151_80802299_80802711_80802808_80807658_80807884_80808286_80808358_80811800_80811941_80813289
ENSMUSG00000047888.11_13	chr15	+	5856	22	NIC	ENSMUSG00000047888.11	novel	5215	18	NA	NA	-41	-200	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	5.61985466359312	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTTTCACTTTTTTCAT	NA	False	NA	7	True	ATTAAA	-13	NA	80682801	80814009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_80683006_80742881_80742970_80748585_80748608_80760517_80760863_80763067_80765408_80767144_80767304_80768407_80768584_80771159_80771235_80772030_80772077_80773219_80773357_80778529_80778656_80786084_80786217_80786488_80786588_80786720_80786914_80797505_80797644_80800884_80801062_80802151_80802299_80802711_80802808_80807658_80807884_80808286_80808358_80811800_80811941_80813289
ENSMUSG00000047888.11_18	chr15	+	4156	17	FSM	ENSMUSG00000047888.11	ENSMUST00000228124.2	3407	17	-949	200	-949	-200	multi-exon	FALSE	canonical	1	2	junction_1	6.25468574350462	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTTTCACTTTTTTCAT	1509	False	NA	7	True	ATTAAA	-13	NA	80763949	80814009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_80765408_80768407_80768584_80771159_80771235_80772030_80772077_80773219_80773357_80778529_80778656_80786084_80786217_80786488_80786588_80786720_80786914_80797505_80797644_80800884_80801062_80802151_80802299_80802711_80802808_80807658_80807884_80808286_80808358_80811800_80811941_80813289
ENSMUSG00000047888.11_2	chr15	+	5717	24	NIC	ENSMUSG00000047888.11	novel	17332	25	NA	NA	-52	-431	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	6.83120826993448	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGGAAAAAAGAAAACGG	NA	False	NA	NA	False	AATAAA	-10	NA	80595461	80813778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_80595690_80631606_80631675_80643740_80643832_80668939_80669008_80742881_80742970_80748585_80748608_80760517_80760863_80763067_80765408_80768407_80768584_80771159_80771235_80772030_80772077_80773219_80773357_80778529_80778656_80786084_80786217_80786488_80786588_80786720_80786914_80797505_80797644_80800884_80801062_80802151_80802299_80802711_80802808_80807658_80807884_80808286_80808358_80811800_80811941_80813289
ENSMUSG00000047888.11_22	chr15	+	3554	1	FSM	ENSMUSG00000092868.3	ENSMUST00000175127.3	82	1	-2511	-961	-2511	961	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCATTTACTGTTGTCATT	1300	False	NA	3	True	AATAAA	-15	NA	80821728	80825282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_80821700_80825300
ENSMUSG00000047888.11_4	chr15	+	5888	25	FSM	ENSMUSG00000047888.11	ENSMUST00000067689.9	17332	25	-64	11508	-64	-431	multi-exon	FALSE	canonical	1	2	junction_2	6.56960594116742	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGGAAAAAAGAAAACGG	NA	False	NA	NA	False	AATAAA	-10	NA	80595449	80813778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_80595690_80631606_80631675_80643740_80643832_80668939_80669008_80742881_80742970_80748585_80748608_80760517_80760863_80763067_80765408_80767144_80767304_80768407_80768584_80771159_80771235_80772030_80772077_80773219_80773357_80778529_80778656_80786084_80786217_80786488_80786588_80786720_80786914_80797505_80797644_80800884_80801062_80802151_80802299_80802711_80802808_80807658_80807884_80808286_80808358_80811800_80811941_80813289
ENSMUSG00000047888.11_9	chr15	+	7132	3	ISM	ENSMUSG00000047888.11	ENSMUST00000226857.2	3240	5	-50	10273	-50	-10273	5prime_fragment	FALSE	canonical	3	10	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	80682792	80755416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_80683006_80742881_80742970_80748585
ENSMUSG00000047904.7_0	chr11	+	2328	3	FSM	ENSMUSG00000047904.7	ENSMUST00000106630.2	1537	3	-670	-121	-536	-12	multi-exon	FALSE	canonical	0	0	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATTGAAAGT	NA	False	NA	NA	False	NA	NA	NA	113509631	113516842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_113510449_113514992_113516076_113516414
ENSMUSG00000047904.7_1	chr11	+	2168	2	FSM	ENSMUSG00000047904.7	ENSMUST00000146390.3	2143	2	-37	12	-37	-12	multi-exon	FALSE	canonical	2	8	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATTGAAAGT	NA	False	NA	NA	False	NA	NA	NA	113510130	113516842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_113510449_113514992
ENSMUSG00000047909.12_0	chr2	+	3616	6	NIC	ENSMUSG00000047909.12	novel	1485	7	NA	NA	9	1	intron_retention	FALSE	canonical	3	29	junction_2	16.4	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATAGTTGGCCTATTC	4813	False	NA	29	True	AATAAA	-31	NA	11783346	11795132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_11783714_11784487_11784635_11786287_11788561_11789101_11789264_11791034_11791114_11794544
ENSMUSG00000047909.12_1	chr2	+	3803	7	NIC	ENSMUSG00000047909.12	novel	1485	7	NA	NA	-5	0	intron_retention	FALSE	canonical	2	5	junction_4	28.0515398666257	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACATAGTTGGCCTATT	4763	False	NA	28	True	AATAAA	-30	NA	11783296	11795131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_11783714_11784487_11784635_11786287_11788561_11789101_11789264_11789933_11790072_11791034_11791114_11794544
ENSMUSG00000047909.12_13	chr2	+	4348	6	FSM	ENSMUSG00000047909.12	ENSMUST00000150213.8	3643	6	-730	25	-82	1	multi-exon	FALSE	canonical	3	10	junction_3	23.5168025037419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTTATTCAAGCTCTAAA	4071	False	NA	12	True	AATAAA	-14	NA	11782604	11795115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_11783714_11784487_11784635_11786287_11788568_11789101_11789264_11791034_11791114_11794544
ENSMUSG00000047909.12_14	chr2	+	3672	6	NIC	ENSMUSG00000047909.12	novel	1618	7	NA	NA	-11	0	intron_retention	FALSE	canonical	3	30	junction_2	16.0822883943797	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACATAGTTGGCCTATT	4830	False	NA	28	True	AATAAA	-30	NA	11783363	11795131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_11783714_11784487_11784709_11786287_11788561_11789101_11789264_11791034_11791114_11794544
ENSMUSG00000047909.12_19	chr2	+	2918	3	FSM	ENSMUSG00000047909.12	ENSMUST00000148498.8	895	3	-2004	-19	-1088	0	multi-exon	FALSE	canonical	3	45	junction_1	15.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACATAGTTGGCCTATT	8478	False	NA	28	True	AATAAA	-30	NA	11787011	11795131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_11789264_11791034_11791114_11794544
ENSMUSG00000047909.12_2	chr2	+	1580	7	FSM	ENSMUSG00000047909.12	ENSMUST00000056108.12	1618	7	33	5	0	0	multi-exon	FALSE	canonical	3	24	junction_3	18.7742435858871	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACATAGTTGGCCTATT	4801	False	NA	28	True	AATAAA	-30	NA	11783334	11795131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_11783714_11784487_11784709_11786287_11786331_11788451_11788561_11789101_11789264_11791034_11791114_11794544
ENSMUSG00000047909.12_20	chr2	+	1470	4	ISM	ENSMUSG00000047909.12	ENSMUST00000156067.8	1485	7	4545	4	-180	1	3prime_fragment	FALSE	canonical	3	45	junction_2	12.7104506432917	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATAGTTGGCCTATTC	9386	False	NA	29	True	AATAAA	-31	NA	11787919	11795132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_11788561_11789101_11789264_11791034_11791114_11794544
ENSMUSG00000047909.12_3	chr2	+	1494	7	NIC	ENSMUSG00000047909.12	novel	1618	7	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_3	18.9560896108172	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACATAGTTGGCCTATT	4813	False	NA	28	True	AATAAA	-30	NA	11783346	11795131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_11783714_11784487_11784635_11786287_11786331_11788451_11788561_11789101_11789264_11791034_11791114_11794544
ENSMUSG00000047909.12_6	chr2	+	3721	7	NIC	ENSMUSG00000047909.12	novel	3643	6	NA	NA	4	1	intron_retention	FALSE	canonical	2	5	junction_4	27.9727049500441	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATAGTTGGCCTATTC	4853	False	NA	29	True	AATAAA	-31	NA	11783386	11795132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_11783714_11784487_11784635_11786287_11788568_11789101_11789264_11789933_11790072_11791034_11791114_11794544
ENSMUSG00000047909.12_7	chr2	+	4156	5	NIC	ENSMUSG00000047909.12	novel	3643	6	NA	NA	9	0	intron_retention	FALSE	canonical	3	29	junction_2	17.8097585609688	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACATAGTTGGCCTATT	4813	False	NA	28	True	AATAAA	-30	NA	11783346	11795131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_11783714_11784487_11784635_11786287_11789264_11791034_11791114_11794544
ENSMUSG00000047911.7_2	chr14	-	995	9	FSM	ENSMUSG00000047911.7	ENSMUST00000062629.5	997	9	2	0	2	0	multi-exon	FALSE	canonical	1	3	junction_7	2.75850956133924	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCTCCCTCTGCCTCCCCC	NA	False	NA	NA	False	AATAAA	-15	NA	70890522	70884741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_70884990_70885076_70885111_70885484_70885526_70885699_70885852_70886910_70887005_70889562_70889677_70889768_70889855_70889971_70890136_70890460
ENSMUSG00000047921.18_0	chr15	-	3885	22	FSM	ENSMUSG00000047921.18	ENSMUST00000089770.11	4048	22	160	3	1	-3	multi-exon	FALSE	non_canonical	0	0	junction_3	34.9692446667405	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACACTGTGTTGATTTCAG	NA	False	NA	-4	True	AATAAA	-18	NA	72932893	72461471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_72462012_72462464_72462689_72557131_72557223_72565352_72565507_72608624_72608736_72629064_72629208_72775405_72775531_72797354_72797508_72808810_72808975_72813708_72813842_72817907_72818035_72820638_72820725_72824822_72824969_72835408_72835536_72871820_72871965_72884654_72884872_72897810_72897937_72903370_72903493_72922443_72922573_72924010_72924157_72929770_72930364_72932809
ENSMUSG00000047921.18_2	chr15	-	3912	23	NIC	ENSMUSG00000047921.18	novel	4048	22	NA	NA	1	-3	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	48.4420075881827	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACACTGTGTTGATTTCAG	NA	False	NA	-4	True	AATAAA	-18	NA	72932893	72461471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_72462012_72462464_72462689_72557131_72557223_72565352_72565507_72608624_72608736_72629064_72629208_72775405_72775531_72797354_72797508_72808810_72808975_72813708_72813842_72817907_72818035_72820638_72820725_72824822_72824969_72835408_72835536_72871820_72871965_72884654_72884872_72897810_72897937_72903370_72903493_72914025_72914053_72922443_72922573_72924010_72924157_72929770_72930364_72932809
ENSMUSG00000047945.7_0	chr4	+	1543	2	FSM	ENSMUSG00000047945.7	ENSMUST00000062356.7	1605	2	51	11	51	-11	multi-exon	FALSE	canonical	3	8029	junction_1	0	7836	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATGTTTCATTGAGTGG	NA	False	NA	13	True	AATAAA	-13	NA	129407424	129409767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129407710_129408509
ENSMUSG00000047953.8_0	chr16	-	1465	1	Genic_Genomic	ENSMUSG00000047953.8	novel	NA	NA	NA	NA	1631	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCGTGTCCGTTCCTCTT	NA	False	NA	NA	False	AATAAA	-35	NA	30127966	30126501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_-_30126500_30128000
ENSMUSG00000047986.13_0	chr8	+	2461	7	FSM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	-12	3	-12	-3	multi-exon	FALSE	canonical	3	12	junction_2	39.9110121255887	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAAAGATTTATTT	NA	False	NA	8	True	ATTAAA	-21	NA	84748087	84756921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84748158_84750980_84751030_84752822_84752904_84753377_84753521_84753628_84753714_84754754_84754801_84754934
ENSMUSG00000047986.13_3	chr8	+	2499	4	ISM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	5040	3	436	-3	3prime_fragment	FALSE	canonical	3	94	junction_1	4.54606056566195	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAAAGATTTATTT	NA	False	NA	8	True	ATTAAA	-21	NA	84753139	84756921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84753521_84753628_84753714_84754754_84754801_84754934
ENSMUSG00000047986.13_4	chr8	+	2417	5	ISM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	4648	3	44	-3	3prime_fragment	FALSE	canonical	3	94	junction_2	4.49305018890286	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAAAGATTTATTT	NA	False	NA	8	True	ATTAAA	-21	NA	84752747	84756921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84752904_84753377_84753521_84753628_84753714_84754754_84754801_84754934
ENSMUSG00000047986.13_5	chr8	+	2505	4	NIC	ENSMUSG00000047986.13	novel	2452	7	NA	NA	67	0	intron_retention	FALSE	canonical	3	95	junction_1	4.10960933531265	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATTTATTTATT	NA	False	NA	11	True	ATTAAA	-24	NA	84752770	84756924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_84752904_84753377_84753714_84754754_84754801_84754934
ENSMUSG00000047986.13_6	chr8	+	2353	4	NIC	ENSMUSG00000047986.13	novel	2452	7	NA	NA	23	-3	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	44.8503685108111	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAAAGATTTATTT	NA	False	NA	8	True	ATTAAA	-21	NA	84752726	84756921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_84752904_84753377_84753521_84754754_84754801_84754934
ENSMUSG00000047986.13_9	chr8	+	1468	1	ISM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	7354	3	2750	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAAAGATTTATTT	NA	False	NA	8	True	ATTAAA	-21	NA	84755453	84756921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84755500_84756900
ENSMUSG00000047989.12_1	chr18	-	2383	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	105	10	-13	-10	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	694	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGACATGTTTTGTTGGGG	NA	False	NA	NA	False	NA	NA	NA	24254905	24237823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
ENSMUSG00000047996.17_0	chrX	-	3893	4	FSM	ENSMUSG00000047996.17	ENSMUST00000114024.9	3900	4	4	3	-1	-3	multi-exon	FALSE	canonical	3	8	junction_1	4.64279609239471	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAGCTTGTTTTTCTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	77627498	77493221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_77496779_77527356_77527518_77564376_77564428_77627374
ENSMUSG00000047996.17_1	chrX	-	3660	2	ISM	ENSMUSG00000047996.17	ENSMUST00000177904.8	3851	4	99930	2	99930	-2	3prime_fragment	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTGTTTTTCTTATA	NA	False	NA	NA	False	AATAAA	-16	NA	77527458	77493220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_77496779_77527356
ENSMUSG00000047996.17_13	chrX	-	3982	5	NIC	ENSMUSG00000047996.17	novel	3964	5	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	7.15891053163818	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTGTTTTTCTTATA	NA	False	NA	NA	False	AATAAA	-16	NA	77627501	77493220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_77496779_77527356_77527518_77564376_77564428_77605165_77605251_77627374
ENSMUSG00000047996.17_4	chrX	-	2922	1	ISM	ENSMUSG00000047996.17	ENSMUST00000177904.8	3851	4	131240	8	131240	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCAACAGCTTGTTTTT	NA	False	NA	NA	False	AATAAA	-10	NA	77496148	77493226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_77493200_77496100
ENSMUSG00000047996.17_9	chrX	-	3825	4	FSM	ENSMUSG00000047996.17	ENSMUST00000177904.8	3851	4	21	5	21	-5	multi-exon	FALSE	canonical	0	0	junction_3	7.78888096369861	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACAGCTTGTTTTTCTT	NA	False	NA	NA	False	AATAAA	-13	NA	77627367	77493223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_77496779_77527356_77527518_77564376_77564428_77627309
ENSMUSG00000048000.16_1	chr1	+	5673	29	FSM	ENSMUSG00000048000.16	ENSMUST00000027475.15	5724	29	27	24	0	-24	multi-exon	FALSE	canonical	3	77	junction_9	29.4000164861817	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAAAAAATTAAAT	NA	False	NA	-17	True	NA	NA	NA	87254751	87378494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334705_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732_87369888_87371366_87371549_87374033_87374182_87376799
ENSMUSG00000048000.16_3	chr1	+	5654	29	FSM	ENSMUSG00000048000.16	ENSMUST00000172794.8	4029	29	2	-1627	1	-24	multi-exon	FALSE	canonical	3	42	junction_9	32.8746847583241	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAAAAAATTAAAT	NA	False	NA	-17	True	NA	NA	NA	87254752	87378494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334723_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732_87369888_87371366_87371549_87374033_87374182_87376799
ENSMUSG00000048000.16_4	chr1	+	2925	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174583.8	3015	4	0	90	0	-90	multi-exon	FALSE	canonical	3	38	junction_3	78.7922726047562	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAGTGAATTGCTGGAAA	NA	False	NA	NA	False	NA	NA	NA	87254751	87285416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282702
ENSMUSG00000048000.16_5	chr1	+	2927	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174846.8	995	4	32	-1964	0	-98	multi-exon	FALSE	canonical	3	15	junction_3	89.5408038581046	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAATGAATGAGTGAATT	NA	False	NA	NA	False	NA	NA	NA	87254751	87285408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282692
ENSMUSG00000048000.16_54	chr1	+	3205	10	ISM	ENSMUSG00000048000.16	ENSMUST00000174501.8	3876	27	70706	-1627	4941	-24	3prime_fragment	FALSE	canonical	3	125	junction_8	21.0502045384626	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAAAAAATTAAAT	NA	False	NA	-17	True	NA	NA	NA	87352873	87378494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732_87369888_87371366_87371549_87374033_87374182_87376799
ENSMUSG00000048000.16_58	chr1	+	2905	8	ISM	ENSMUSG00000048000.16	ENSMUST00000174671.8	3074	9	626	24	626	-24	3prime_fragment	FALSE	canonical	3	125	junction_6	22.1608222053318	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAAAAAATTAAAT	1189	False	NA	-17	True	NA	NA	NA	87361467	87378494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732_87369888_87371366_87371549_87374033_87374182_87376799
ENSMUSG00000048000.16_61	chr1	+	2257	5	ISM	ENSMUSG00000048000.16	ENSMUST00000174671.8	3074	9	7726	24	-2482	-24	3prime_fragment	FALSE	canonical	3	125	junction_3	25.6417628099162	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAAAAAATTAAAT	5903	False	NA	-17	True	NA	NA	NA	87368567	87378494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_87368645_87369732_87369888_87371366_87371549_87374033_87374182_87376799
ENSMUSG00000048000.16_65	chr1	+	1000	1	ISM	ENSMUSG00000048000.16	ENSMUST00000027475.15	5724	29	122770	24	6445	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAAAAAATTAAAT	NA	False	NA	-17	True	NA	NA	NA	87377494	87378494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_87377500_87378500
ENSMUSG00000048007.5_0	chrX	-	1199	2	FSM	ENSMUSG00000048007.5	ENSMUST00000054213.5	1421	2	218	4	218	-4	multi-exon	FALSE	canonical	3	1175	junction_1	0	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGTTGTGACGAAGAGG	NA	False	NA	-14	True	AATAAA	-12	NA	133442396	133438008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133439017_133442205
ENSMUSG00000048007.5_1	chrX	-	813	1	ISM	ENSMUSG00000048007.5	ENSMUST00000054213.5	1421	2	3795	2	3795	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTGTGACGAAGAGGCT	NA	False	NA	-12	True	AATAAA	-14	NA	133438819	133438006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_133438000_133438800
ENSMUSG00000048012.20_0	chr7	-	3650	5	FSM	ENSMUSG00000048012.20	ENSMUST00000120074.8	3624	5	1	-27	1	3	multi-exon	FALSE	canonical	1	2	junction_4	25.0499500997507	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTCACTGGCTATTTTT	NA	False	NA	-13	True	AATAAA	-16	NA	44397472	44380911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397359
ENSMUSG00000048012.20_1	chr7	-	3730	5	NIC	ENSMUSG00000048012.20	novel	3559	5	NA	NA	-56	3	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	16.8077363139716	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTCACTGGCTATTTTT	NA	False	NA	-13	True	AATAAA	-16	NA	44397529	44380911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44384070_44387389_44387456_44388926_44389060_44391112_44391290_44397333
ENSMUSG00000048012.20_10	chr7	-	3614	5	NIC	ENSMUSG00000048012.20	novel	3800	5	NA	NA	1	3	combination_of_known_junctions	FALSE	canonical	2	10	junction_4	21.7140507506085	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTCACTGGCTATTTTT	NA	False	NA	-13	True	AATAAA	-16	NA	44397729	44380911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397652
ENSMUSG00000048012.20_2	chr7	-	3711	5	FSM	ENSMUSG00000048012.20	ENSMUST00000140599.9	1006	5	266	-2971	-34	3	multi-exon	FALSE	canonical	3	48	junction_2	7.63216876123687	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTCACTGGCTATTTTT	NA	False	NA	-13	True	AATAAA	-16	NA	44397507	44380911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397333
ENSMUSG00000048012.20_4	chr7	-	3583	5	FSM	ENSMUSG00000048012.20	ENSMUST00000060270.13	3800	5	224	-7	-2	-4	multi-exon	FALSE	canonical	2	7	junction_4	22.9605640174626	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTGGCTATTTTTTAAT	NA	False	NA	-9	True	AATAAA	-20	NA	44397817	44380907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397775
ENSMUSG00000048012.20_6	chr7	-	3574	5	FSM	ENSMUSG00000048012.20	ENSMUST00000120798.8	3559	5	-1	-14	-1	2	multi-exon	FALSE	canonical	2	7	junction_4	24.8633766813762	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTTCACTGGCTATTTT	NA	False	NA	-14	True	AATAAA	-15	NA	44397816	44380912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44384070_44387389_44387456_44388926_44389060_44391112_44391290_44397775
ENSMUSG00000048012.20_8	chr7	-	3716	5	NIC	ENSMUSG00000048012.20	novel	3624	5	NA	NA	-62	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	26.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGCTATTTTTTAATTT	NA	False	NA	-7	True	AATAAA	-22	NA	44397535	44380905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44384070_44387389_44387456_44388926_44389060_44391112_44391290_44397359
ENSMUSG00000048012.20_9	chr7	-	1951	1	ISM	ENSMUSG00000048012.20	ENSMUST00000149011.9	9230	3	10792	8	10792	3	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTCACTGGCTATTTTT	NA	False	NA	-13	True	AATAAA	-16	NA	44382862	44380911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44380900_44382900
ENSMUSG00000048027.10_0	chr17	-	2040	3	FSM	ENSMUSG00000048027.10	ENSMUST00000170578.3	5698	3	28	3630	2	-2329	multi-exon	FALSE	canonical	3	46	junction_1	3.5	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTAGTATGTACAGTGCAT	NA	False	NA	-4	True	ATTAAA	-18	NA	16046820	16027079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_16028064_16040931_16041441_16046273
ENSMUSG00000048027.10_1	chr17	-	2947	2	ISM	ENSMUSG00000048027.10	ENSMUST00000170578.3	5698	3	5465	2119	3274	-818	3prime_fragment	FALSE	canonical	3	46	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCTGCCTTTAGAGTGT	NA	False	NA	NA	False	AGTAAA	-19	NA	16041383	16025568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_16028064_16040931
ENSMUSG00000048027.10_2	chr17	-	2030	1	ISM	ENSMUSG00000048027.10	ENSMUST00000170578.3	5698	3	19888	1481	55	-180	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCCGATGTTTGTTCTCT	NA	False	NA	-7	True	AATAAA	-15	NA	16026960	16024930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_16024900_16027000
ENSMUSG00000048029.11_0	chr19	+	2097	14	FSM	ENSMUSG00000048029.11	ENSMUST00000200910.4	2567	14	-19	489	-19	-1	multi-exon	FALSE	canonical	0	0	junction_6	1.9551176964829	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCATGAGCTTTACTTTC	NA	False	NA	NA	False	AATATA	-21	NA	58931837	58959364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_58932054_58933965_58934095_58935083_58935275_58941568_58941724_58943574_58943745_58943849_58943982_58946018_58946073_58947437_58947495_58948554_58948723_58951213_58951340_58952809_58953006_58956933_58957002_58957504_58957623_58959047
ENSMUSG00000048039.9_0	chr3	+	2899	4	FSM	ENSMUSG00000048039.9	ENSMUST00000055984.7	2893	4	-6	0	-6	0	multi-exon	FALSE	canonical	3	350	junction_2	9.0921211313239	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATGTGTATGTGTGTGC	NA	False	NA	31	True	NA	NA	NA	87837614	87847993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_87837919_87838637_87839583_87845880_87846082_87846544
ENSMUSG00000048039.9_13	chr3	+	1093	1	ISM	ENSMUSG00000048039.9	ENSMUST00000055984.7	2893	4	9280	0	9280	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATGTGTATGTGTGTGC	13	False	NA	31	True	NA	NA	NA	87846900	87847993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_87846900_87848000
ENSMUSG00000048039.9_2	chr3	+	2411	3	ISM	ENSMUSG00000048039.9	ENSMUST00000055984.7	2893	4	1201	0	1201	0	3prime_fragment	FALSE	canonical	3	350	junction_1	11	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATGTGTATGTGTGTGC	NA	False	NA	31	True	NA	NA	NA	87838821	87847993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_87839583_87845880_87846082_87846544
ENSMUSG00000048040.9_0	chrX	+	1532	1	FSM	ENSMUSG00000048040.9	ENSMUST00000058119.9	1532	1	-4	4	-4	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTCTTGTAGGTCCATT	NA	False	NA	16	True	AATAAA	-13	NA	134894568	134896100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134894600_134896100
ENSMUSG00000048047.4_0	chrX	+	4972	2	FSM	ENSMUSG00000048047.4	ENSMUST00000115142.3	2567	2	-45	-2360	-26	-2	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCTGAGTGATTTTTTT	NA	False	NA	3	True	AATAAA	-14	NA	37278643	37285921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_37278786_37281091
ENSMUSG00000048047.4_1	chrX	+	5144	2	FSM	ENSMUSG00000048047.4	ENSMUST00000049740.3	5122	2	-26	4	-26	-4	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTTCTGAGTGATTTTT	NA	False	NA	1	True	AATAAA	-12	NA	37278643	37285919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_37278960_37281091
ENSMUSG00000048047.4_2	chrX	+	1912	1	ISM	ENSMUSG00000048047.4	ENSMUST00000049740.3	5122	2	5340	2	5299	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCTGAGTGATTTTTTT	NA	False	NA	3	True	AATAAA	-14	NA	37284009	37285921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_37284000_37285900
ENSMUSG00000048058.18_0	chr2	-	3808	6	FSM	ENSMUSG00000048058.18	ENSMUST00000058790.12	3833	6	23	2	-4	-2	multi-exon	FALSE	canonical	3	53	junction_4	7.56306816047562	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTCGTGTGAATGGTT	NA	False	NA	-4	True	AATAAA	-16	NA	102016707	101780549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_101783521_101785173_101785520_101888251_101888387_101900277_101900404_101943877_101944025_102016624
ENSMUSG00000048058.18_1	chr2	-	1865	1	ISM	ENSMUSG00000048058.18	ENSMUST00000111222.2	3710	6	234291	0	186052	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCGTGTGAATGGTTCT	NA	False	NA	-2	True	AATAAA	-18	NA	101782412	101780547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_101780500_101782400
ENSMUSG00000048058.18_3	chr2	-	3805	6	NNC	ENSMUSG00000048058.18	novel	3833	6	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	25.7169204999354	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTCGTGTGAATGGTT	NA	False	NA	-4	True	AATAAA	-16	NA	102016707	101780549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_101783521_101785173_101785520_101888251_101888384_101900277_101900404_101943877_101944025_102016624
ENSMUSG00000048058.18_5	chr2	-	3728	6	FSM	ENSMUSG00000048058.18	ENSMUST00000111222.2	3710	6	-19	1	8	-1	multi-exon	FALSE	canonical	2	7	junction_4	25.560907652116	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTCGTGTGAATGGTTC	NA	False	NA	-3	True	AATAAA	-17	NA	102016722	101780548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_101783521_101785173_101785520_101888251_101888387_101900277_101900404_101943973_101944025_102016624
ENSMUSG00000048065.9_1	chr7	-	2690	9	FSM	ENSMUSG00000048065.9	ENSMUST00000208217.2	1178	9	-2	-1510	-2	0	multi-exon	FALSE	canonical	2	13	junction_8	13.026415470113	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAAATCGGTGGACTC	NA	False	NA	NA	False	AATAAA	-12	NA	107357205	107347661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107357164
ENSMUSG00000048065.9_3	chr7	-	2081	9	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-9	-1	intron_retention	FALSE	canonical	3	29	junction_7	8.01171017948103	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTCACAATGTGTGGATA	NA	False	NA	-6	True	AATAAA	-18	NA	107357212	107349172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356786_107356912_107357164
ENSMUSG00000048065.9_4	chr7	-	1312	10	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-12	-3	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	9.77651506998175	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGCTCACAATGTGTGGA	NA	False	NA	-8	True	AATAAA	-16	NA	107357215	107349174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356786_107356912_107357164
ENSMUSG00000048065.9_7	chr7	-	1951	8	NIC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-3	0	intron_retention	FALSE	canonical	2	13	junction_7	12.1705566421422	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357206	107349171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107357164
ENSMUSG00000048070.5_0	chr11	+	4173	2	FSM	ENSMUSG00000048070.5	ENSMUST00000123434.3	4200	2	19	8	19	-8	multi-exon	FALSE	canonical	3	13	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACCAGTGGGTTCAGA	NA	False	NA	-5	True	AATAAA	-5	NA	66802825	66820694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_66802969_66816664
ENSMUSG00000048070.5_3	chr11	+	2052	1	ISM	ENSMUSG00000048070.5	ENSMUST00000123434.3	4200	2	15844	0	15844	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGGTTCAGAAGTGTGTT	NA	False	NA	3	True	AATAAA	-13	NA	66818650	66820702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_66818600_66820700
ENSMUSG00000048076.15_0	chr11	-	1753	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	44	3	44	-3	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	2248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGATGGGCTTGTGTGTC	1891	False	NA	-7	True	AATAAA	-12	NA	59119052	59102242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
ENSMUSG00000048076.15_2	chr11	-	818	1	ISM	ENSMUSG00000048076.15	ENSMUST00000163300.8	1991	5	15930	3	15930	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATGGGCTTGTGTGTCAG	NA	False	NA	-5	True	AATAAA	-14	NA	59103058	59102240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_59102200_59103100
ENSMUSG00000048076.15_5	chr11	-	1690	4	ISM	ENSMUSG00000048076.15	ENSMUST00000163300.8	1991	5	14648	5	14648	-3	3prime_fragment	FALSE	canonical	3	2258	junction_1	47.7935374524864	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGATGGGCTTGTGTGTC	NA	False	NA	-7	True	AATAAA	-12	NA	59104340	59102242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165
ENSMUSG00000048078.17_1	chr7	+	10241	32	NIC	ENSMUSG00000048078.17	novel	3560	5	NA	NA	-16	-700	combination_of_known_junctions	TRUE	canonical	1	4	junction_6	6.20009734407151	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAGGAGTGGTTTTGTTT	NA	False	NA	NA	False	ATTAAA	-8	NA	95859336	96557061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_95859617_96004562_96004619_96085966_96086066_96199218_96199507_96202684_96202955_96293205_96293416_96343976_96344233_96351848_96351948_96353132_96353369_96378555_96378733_96384891_96385107_96386557_96386769_96421210_96421313_96423181_96423377_96427025_96427227_96446526_96446713_96461039_96461187_96472936_96473154_96486482_96486603_96492132_96492395_96494903_96495172_96497202_96497347_96501539_96501790_96512656_96512890_96517156_96517312_96522860_96523739_96534523_96534697_96537880_96538117_96542065_96542363_96543859_96545475_96552051_96552195_96555039
ENSMUSG00000048078.17_15	chr7	+	3760	7	ISM	ENSMUSG00000048078.17	ENSMUST00000107165.8	10930	33	662651	1636	77681	-1636	3prime_fragment	FALSE	canonical	3	18	junction_2	4.78423336480244	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATTTCATTGTCTTTTG	1179	False	NA	NA	False	NA	NA	NA	96523528	96556125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_96523739_96534523_96534697_96537880_96538117_96542065_96542363_96543859_96545475_96552051_96552195_96555039
ENSMUSG00000048078.17_16	chr7	+	3013	4	ISM	ENSMUSG00000048078.17	ENSMUST00000107165.8	10930	33	681329	1623	96359	-1623	3prime_fragment	FALSE	canonical	3	20	junction_2	4.32049379893857	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGTTCCCTTTTTCTC	9478	False	NA	NA	False	NA	NA	NA	96542206	96556138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_96542363_96543859_96545475_96552051_96552195_96555039
ENSMUSG00000048078.17_18	chr7	+	2781	3	ISM	ENSMUSG00000048078.17	ENSMUST00000107165.8	10930	33	683988	693	99018	-693	3prime_fragment	FALSE	canonical	3	20	junction_1	4	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGTTTTGTTTTTGTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	96544865	96557068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_96545475_96552051_96552195_96555039
ENSMUSG00000048078.17_20	chr7	+	2423	2	ISM	ENSMUSG00000048078.17	ENSMUST00000107165.8	10930	33	690918	698	105948	-698	3prime_fragment	FALSE	canonical	3	28	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGAGTGGTTTTGTTTTT	1624	False	NA	NA	False	ATTAAA	-10	NA	96551795	96557063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_96552195_96555039
ENSMUSG00000048078.17_21	chr7	+	3602	1	ISM	ENSMUSG00000048078.17	ENSMUST00000107166.8	13172	33	696851	4	110847	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTGTGCAGTGGCCTT	6523	False	NA	13	True	AATAAA	-16	NA	96556694	96560296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_96556700_96560300
ENSMUSG00000048078.17_28	chr7	+	9278	11	ISM	ENSMUSG00000048078.17	ENSMUST00000107162.8	11021	33	676853	-2520	51458	-4	3prime_fragment	FALSE	canonical	3	12	junction_1	5.35630469633683	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTGTGCAGTGGCCTT	NA	False	NA	13	True	AATAAA	-16	NA	96497305	96560296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_96497347_96501539_96501790_96512656_96512890_96517156_96517312_96522860_96523739_96534523_96534697_96537880_96538117_96542065_96542363_96543859_96545475_96552051_96552195_96555039
ENSMUSG00000048087.7_0	chr16	-	2079	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	2	12	2	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	1993	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATAAAAATA	NA	False	NA	NA	False	GATAAA	-19	NA	45975438	45973359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_45973400_45975400
ENSMUSG00000048100.14_0	chr3	+	1283	4	FSM	ENSMUSG00000048100.14	ENSMUST00000143054.2	2443	4	3	1157	3	-4	multi-exon	FALSE	canonical	3	149	junction_1	10.4986771653491	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTACTTGAGTTTGTGT	NA	False	NA	10	True	AATAAA	-19	NA	108479017	108489381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108479065_108480195_108480275_108485431_108485530_108488322
ENSMUSG00000048100.14_1	chr3	+	1288	4	FSM	ENSMUSG00000048100.14	ENSMUST00000131814.8	596	4	3	-695	2	-4	multi-exon	FALSE	canonical	3	6	junction_1	77.7988860245869	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTACTTGAGTTTGTGT	NA	False	NA	10	True	AATAAA	-19	NA	108479016	108489381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108479069_108480195_108480275_108485431_108485530_108488322
ENSMUSG00000048100.14_2	chr3	+	1226	3	ISM	ENSMUSG00000048100.14	ENSMUST00000056292.8	1655	4	1181	14	1169	-14	3prime_fragment	FALSE	canonical	3	169	junction_1	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAACACATCAGTACTT	NA	False	NA	0	True	AATAAA	-9	NA	108480195	108489371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_108480275_108485431_108485530_108488322
ENSMUSG00000048100.14_3	chr3	+	1648	4	FSM	ENSMUSG00000048100.14	ENSMUST00000056292.8	1655	4	3	4	3	-4	multi-exon	TRUE	canonical	2	8	junction_1	76.856287243718	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTACTTGAGTTTGTGT	NA	False	NA	10	True	AATAAA	-19	NA	108479017	108489381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108479430_108480195_108480275_108485431_108485530_108488322
ENSMUSG00000048100.14_7	chr3	+	1200	3	NIC	ENSMUSG00000048100.14	novel	2443	4	NA	NA	1	-10	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	86	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACATCAGTACTTGAGT	NA	False	NA	4	True	AATAAA	-13	NA	108479015	108489375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_108479065_108485431_108485530_108488322
ENSMUSG00000048106.7_0	chr3	+	2301	1	FSM	ENSMUSG00000048106.7	ENSMUST00000059704.6	1028	1	-73	-1200	23	1200	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATGCTAATAGTTGTG	NA	False	NA	NA	False	NA	NA	NA	19949072	19951373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_19949100_19951400
ENSMUSG00000048109.11_0	chr3	-	3192	2	FSM	ENSMUSG00000048109.11	ENSMUST00000061772.11	4343	2	624	527	52	-527	multi-exon	FALSE	canonical	3	61	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAAATGTTTTTCTGCCT	NA	False	NA	-12	True	AATAAA	-13	NA	107240365	107233263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107233621_107237530
ENSMUSG00000048109.11_1	chr3	-	7098	1	FSM	ENSMUSG00000048109.11	ENSMUST00000197769.2	5967	1	56	-1187	56	-527	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAAATGTTTTTCTGCCT	NA	False	NA	-12	True	AATAAA	-13	NA	107240361	107233263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107233300_107240400
ENSMUSG00000048118.18_0	chr12	+	4955	24	FSM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	31	12	-8	-12	multi-exon	FALSE	canonical	3	75	junction_5	14.334249175764	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGACAATTCTAGGT	3412	False	NA	-6	True	AATAAA	-5	NA	71062794	71145354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866_71110099_71113852_71114113_71116607_71116806_71118581_71118667_71119363_71119506_71121709_71122844_71123216_71123322_71133228_71133436_71134234_71134382_71144274
ENSMUSG00000048118.18_14	chr12	+	4627	19	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	20981	12	-11370	-12	3prime_fragment	FALSE	canonical	3	82	junction_2	14.9150888882101	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGACAATTCTAGGT	8766	False	NA	-6	True	AATAAA	-5	NA	71083744	71145354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866_71110099_71113852_71114113_71116607_71116806_71118581_71118667_71119363_71119506_71121709_71122844_71123216_71123322_71133228_71133436_71134234_71134382_71144274
ENSMUSG00000048118.18_32	chr12	+	2356	5	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	59263	12	26912	-12	3prime_fragment	FALSE	canonical	3	83	junction_1	23.7631542519086	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGACAATTCTAGGT	NA	False	NA	-6	True	AATAAA	-5	NA	71122026	71145354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_71122844_71123216_71123322_71133228_71133436_71134234_71134382_71144274
ENSMUSG00000048138.11_1	chr19	+	2352	4	FSM	ENSMUSG00000048138.11	ENSMUST00000053068.7	2337	4	-19	4	-19	-4	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACCCAGTATTTGTTGA	NA	False	NA	NA	False	AATAAA	-17	NA	25649755	25656351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_25650123_25650779_25651341_25652914_25653018_25655030
ENSMUSG00000048142.10_0	chr5	+	4761	2	NIC	ENSMUSG00000048142.10	novel	6529	3	NA	NA	87	2234	intron_retention	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTTTTCTGTTTGGATT	NA	False	NA	19	True	AAAACA	-17	NA	34153414	34160421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_34155878_34158123
ENSMUSG00000048142.10_1	chr5	+	3027	3	FSM	ENSMUSG00000048142.10	ENSMUST00000056355.9	6529	3	634	2868	634	2205	multi-exon	FALSE	canonical	2	3	junction_1	1.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGGAAAACAAACAGTT	NA	False	NA	-10	True	NA	NA	NA	34153961	34160392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34154555_34155712_34155878_34158123
ENSMUSG00000048154.18_0	chr15	-	2031	1	ISM	ENSMUSG00000048154.18	ENSMUST00000178486.9	19805	55	37456	28	3437	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAAAAGAACATTTT	9773	False	NA	NA	False	NA	NA	NA	98731608	98729577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98729600_98731600
ENSMUSG00000048154.18_1	chr15	-	3705	7	ISM	ENSMUSG00000048154.18	ENSMUST00000178486.9	19805	55	31831	32	-2188	-29	3prime_fragment	FALSE	canonical	3	7	junction_3	33.8004766567311	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CGATAAATAAAAAAAGAACA	5420	False	NA	NA	False	NA	NA	NA	98737233	98729581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98732474_98732596_98732706_98732788_98732863_98733062_98733349_98734955_98735087_98735175_98735313_98737157
ENSMUSG00000048154.18_13	chr15	-	3085	3	ISM	ENSMUSG00000048154.18	ENSMUST00000191973.3	899	6	2181	-2608	2181	-21	3prime_fragment	FALSE	canonical	3	10	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAACATTTTAAAT	9789	False	NA	NA	False	NA	NA	NA	98732864	98729573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98732474_98732596_98732706_98732788
ENSMUSG00000048154.18_2	chr15	-	3148	4	ISM	ENSMUSG00000048154.18	ENSMUST00000191973.3	899	6	1934	-2624	1934	-5	3prime_fragment	FALSE	canonical	3	7	junction_3	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACAAGTGCCTCTGTCC	9542	False	NA	NA	False	NA	NA	NA	98733111	98729557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98732474_98732596_98732706_98732788_98732863_98733062
ENSMUSG00000048154.18_3	chr15	-	2949	2	ISM	ENSMUSG00000048154.18	ENSMUST00000191973.3	899	6	2415	-2623	2415	-6	3prime_fragment	FALSE	canonical	3	11	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATACAAGTGCCTCTGTC	9988	False	NA	NA	False	NA	NA	NA	98732630	98729558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98732474_98732596
ENSMUSG00000048154.18_6	chr15	-	5944	16	ISM	ENSMUSG00000048154.18	ENSMUST00000178486.9	19805	55	27556	4	5610	-1	3prime_fragment	FALSE	canonical	3	7	junction_3	23.2191491852929	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTGCCTCTGTCCCATG	1145	False	NA	NA	False	NA	NA	NA	98741508	98729553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98732474_98732596_98732706_98732788_98732863_98733062_98733349_98734955_98735087_98735175_98735313_98737157_98738299_98738441_98738570_98738642_98738776_98739290_98739422_98739619_98739796_98739908_98739985_98740623_98740784_98740939_98741108_98741232_98741374_98741475
ENSMUSG00000048155.5_0	chrX	+	1060	1	FSM	ENSMUSG00000048155.5	ENSMUST00000059808.5	1052	1	-12	4	-12	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTTGTTTCTGCTAGT	NA	False	NA	NA	False	AATAAA	-17	NA	135828061	135829121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_135828100_135829100
ENSMUSG00000048170.15_1	chr7	-	2882	16	FSM	ENSMUSG00000048170.15	ENSMUST00000057557.14	4237	16	23	1332	14	-6	multi-exon	TRUE	canonical	3	440	junction_10	48.8278608992858	977	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACCACCACATTGTCCTT	3885	False	NA	-20	True	NA	NA	NA	128342196	128299496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_128300295_128301042_128301132_128303966_128304132_128305218_128305353_128306202_128306369_128308771_128308890_128310805_128310930_128311505_128311685_128314387_128314489_128316122_128316275_128317669_128317815_128322288_128322391_128325659_128325702_128325791_128325933_128326836_128326923_128341856
ENSMUSG00000048174.3_0	chr1	+	2117	1	FSM	ENSMUSG00000048174.3	ENSMUST00000188789.2	1751	1	-368	2	291	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTATGGCAGTCTAACC	NA	False	NA	4	True	AATAAA	-14	NA	132434258	132436375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_132434300_132436400
ENSMUSG00000048175.14_0	chr15	-	2122	4	FSM	ENSMUSG00000048175.14	ENSMUST00000123626.8	1100	4	46	-1068	-1	-9	multi-exon	FALSE	canonical	3	84	junction_3	16.7531091641721	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCAAATTTGGCCACTT	NA	False	NA	-9	True	AATAAA	-12	NA	98043541	98032526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98034320_98039164_98039270_98040531_98040696_98043481
ENSMUSG00000048175.14_1	chr15	-	2057	3	ISM	ENSMUSG00000048175.14	ENSMUST00000059112.12	1049	4	2844	-1062	2844	-15	3prime_fragment	FALSE	canonical	3	103	junction_2	11	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTCTAAAAGCAAATTTGG	NA	False	NA	-15	True	AATAAA	-6	NA	98040696	98032532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98034320_98039164_98039270_98040531
ENSMUSG00000048175.14_2	chr15	-	2113	4	FSM	ENSMUSG00000048175.14	ENSMUST00000059112.12	1049	4	-1	-1063	-1	-14	multi-exon	FALSE	canonical	3	32	junction_3	39.6848697728604	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCTAAAAGCAAATTTGGC	NA	False	NA	-14	True	AATAAA	-7	NA	98043541	98032531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98034320_98039164_98039270_98040531_98040692_98043481
ENSMUSG00000048186.15_0	chr2	+	3854	9	FSM	ENSMUSG00000048186.15	ENSMUST00000184139.8	2251	9	-26	-1577	-26	-2	multi-exon	FALSE	canonical	2	4	junction_5	3.45506874027131	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCACATGAGTCTTGCTT	4417	False	NA	2	True	AATAAA	-13	NA	4722615	4806951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_4723104_4725291_4725376_4749029_4749333_4754346_4754470_4757530_4757803_4767888_4768115_4793266_4793387_4801343_4801395_4804764
ENSMUSG00000048186.15_1	chr2	+	2667	5	ISM	ENSMUSG00000048186.15	ENSMUST00000115022.8	1945	7	-29	34545	-26	-34545	5prime_fragment	FALSE	canonical	3	9	junction_4	2.12132034355964	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGACCCTGTGTATATTT	4417	False	NA	NA	False	AATAAA	-13	NA	4722615	4759199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_4723104_4725291_4725376_4749029_4749333_4754346_4754470_4757530
ENSMUSG00000048186.15_3	chr2	+	3876	9	FSM	ENSMUSG00000048186.15	ENSMUST00000056914.7	2302	9	-364	-1210	-50	-7	multi-exon	FALSE	canonical	2	4	junction_5	3.45506874027131	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAATGCACATGAGTCT	4393	False	NA	-3	True	AATAAA	-8	NA	4722591	4806946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_4723104_4725291_4725376_4749029_4749333_4754346_4754470_4757530_4757803_4767888_4768115_4793266_4793387_4801340_4801395_4804764
ENSMUSG00000048200.13_0	chr7	+	1857	9	NIC	ENSMUSG00000048200.13	novel	1158	8	NA	NA	16	-2	intron_retention	FALSE	canonical	1	2	junction_1	4.28478412525065	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCCTTGGCTCTTGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	141041823	141046524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_141041847_141043296_141043486_141043562_141043675_141044043_141044207_141044608_141044756_141044851_141045270_141045431_141045599_141045678_141045751_141045958
ENSMUSG00000048200.13_1	chr7	+	1622	10	NIC	ENSMUSG00000048200.13	novel	1158	8	NA	NA	18	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	4.21929723245501	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTTGGCTCTTGTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	141041825	141046525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_141041847_141043296_141043486_141043562_141043675_141044043_141044207_141044608_141044756_141044851_141044943_141045176_141045270_141045431_141045599_141045678_141045751_141045958
ENSMUSG00000048200.13_2	chr7	+	1600	9	ISM	ENSMUSG00000048200.13	ENSMUST00000053670.12	1698	10	2287	5	-30	-5	3prime_fragment	FALSE	canonical	1	3	junction_4	3.76662979332984	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTACTCCTTGGCTCTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	141043293	141046521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_141043486_141043562_141043675_141044043_141044207_141044608_141044756_141044851_141044943_141045176_141045270_141045431_141045599_141045678_141045751_141045958
ENSMUSG00000048217.12_0	chr11	+	2075	7	FSM	ENSMUSG00000048217.12	ENSMUST00000055409.6	2028	7	-52	5	-16	-5	multi-exon	FALSE	canonical	3	17	junction_2	3.13138237134266	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCACACTTGTCTCAAAAA	NA	False	NA	7	True	NA	NA	NA	102036322	102040298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102036818_102037315_102037591_102037688_102037903_102038189_102038371_102038635_102038808_102038917_102039101_102039743
ENSMUSG00000048217.12_1	chr11	+	2639	5	NIC	ENSMUSG00000048217.12	novel	2028	7	NA	NA	-28	-5	intron_retention	FALSE	canonical	3	17	junction_2	3.39116499156263	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCACACTTGTCTCAAAAA	NA	False	NA	7	True	NA	NA	NA	102036310	102040298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102036818_102037315_102037591_102037688_102038808_102038917_102039101_102039743
ENSMUSG00000048217.12_2	chr11	+	2838	3	NIC	ENSMUSG00000048217.12	novel	2714	4	NA	NA	-21	-7	intron_retention	FALSE	canonical	3	24	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTCACACTTGTCTCAAA	NA	False	NA	5	True	NA	NA	NA	102036317	102040296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102036818_102037315_102039101_102039743
ENSMUSG00000048218.7_1	chr15	-	3156	1	FSM	ENSMUSG00000048218.7	ENSMUST00000229890.2	2998	1	-159	1	6	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTATGCTTGAGTTGCCT	NA	False	NA	NA	False	AATACA	-16	NA	97145162	97142006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_97142000_97145200
ENSMUSG00000048222.4_0	chr2	-	2388	7	FSM	ENSMUSG00000048222.4	ENSMUST00000056732.4	3362	7	49	925	49	-925	multi-exon	FALSE	canonical	3	438	junction_3	20.2457128520803	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTTGGCCTATTTTTTA	9244	False	NA	-13	True	AGTAAA	-5	NA	121304499	121291640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_121292786_121292867_121292958_121295259_121295420_121297216_121297378_121297468_121297578_121300259_121300798_121304314
ENSMUSG00000048222.4_10	chr2	-	1960	6	ISM	ENSMUSG00000048222.4	ENSMUST00000056732.4	3362	7	3996	923	3996	-923	3prime_fragment	FALSE	canonical	3	438	junction_3	22.1684460438706	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGGCCTATTTTTTATT	729	False	NA	-11	True	AGTAAA	-7	NA	121300552	121291638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121292786_121292867_121292958_121295259_121295420_121297216_121297378_121297468_121297578_121300259
ENSMUSG00000048222.4_8	chr2	-	2472	8	NNC	ENSMUSG00000048222.4	novel	3362	7	NA	NA	53	-725	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.938259839977	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATGCAGTTCTTGAAGT	9248	False	NA	-8	True	AATAAA	-14	NA	121304495	121291440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_121291452_121291563_121292786_121292867_121292958_121295259_121295420_121297216_121297378_121297468_121297578_121300259_121300798_121304314
ENSMUSG00000048232.13_11	chr4	-	3499	9	ISM	ENSMUSG00000048232.13	ENSMUST00000052236.13	4635	11	25877	7	-109	-6	3prime_fragment	FALSE	canonical	3	26	junction_8	4.89259644769523	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGAGGTGCTTCTGGGGT	NA	False	NA	-7	True	AATAAA	-13	NA	45058727	45034253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_45036083_45040525_45040708_45041731_45042046_45043639_45043904_45044715_45044869_45046343_45046415_45048439_45048577_45051552_45051703_45058328
ENSMUSG00000048232.13_2	chr4	-	4614	11	FSM	ENSMUSG00000048232.13	ENSMUST00000052236.13	4635	11	14	7	14	-6	multi-exon	FALSE	canonical	3	26	junction_8	5.25737577123797	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGAGGTGCTTCTGGGGT	-20	True	NA	-7	True	AATAAA	-13	NA	45084590	45034253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_45036083_45040525_45040708_45041731_45042046_45043639_45043904_45044715_45044869_45046343_45046415_45048439_45048577_45051552_45051703_45058328_45059151_45061939_45062531_45084489
ENSMUSG00000048232.13_4	chr4	-	1600	1	ISM	ENSMUSG00000048232.13	ENSMUST00000052236.13	4635	11	48751	7	22765	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGAGGTGCTTCTGGGGT	NA	False	NA	-7	True	AATAAA	-13	NA	45035853	45034253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_45034300_45035900
ENSMUSG00000048234.14_1	chr1	-	2376	6	NIC	ENSMUSG00000048234.14	novel	2492	7	NA	NA	12	-7	combination_of_known_junctions	FALSE	canonical	3	19	junction_2	66.5924920693016	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATTTTTCTATGTAA	4729	False	NA	-10	True	AATAAA	-10	NA	39616474	39590383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_39591597_39594558_39594752_39599773_39599857_39603128_39603198_39604162_39604414_39615907
ENSMUSG00000048234.14_2	chr1	-	2478	7	FSM	ENSMUSG00000048234.14	ENSMUST00000062525.11	2492	7	7	7	7	-7	multi-exon	FALSE	canonical	3	163	junction_3	11.4661337085446	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATTTTTCTATGTAA	4724	False	NA	-10	True	AATAAA	-10	NA	39616479	39590383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_39591597_39594558_39594752_39597395_39597493_39599773_39599857_39603128_39603198_39604162_39604414_39615907
ENSMUSG00000048234.14_4	chr1	-	2472	7	NNC	ENSMUSG00000048234.14	novel	2492	7	NA	NA	12	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	67.9313378836798	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATTTTTCTATGTAA	4729	False	NA	-10	True	AATAAA	-10	NA	39616474	39590383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_39591597_39594558_39594751_39597395_39597493_39599773_39599857_39603128_39603198_39604162_39604414_39615907
ENSMUSG00000048234.14_9	chr1	-	1073	1	ISM	ENSMUSG00000048234.14	ENSMUST00000062525.11	2492	7	25032	5	6384	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTTTTCTATGTAACA	NA	False	NA	-8	True	AATAAA	-12	NA	39591454	39590381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_39590400_39591500
ENSMUSG00000048240.15_0	chr10	-	1210	1	ISM	ENSMUSG00000048240.15	ENSMUST00000099462.8	3425	4	51531	1	48356	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTCGACTCTAAATTATT	NA	False	NA	-1	True	AATAAA	-18	NA	80785668	80784458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80784500_80785700
ENSMUSG00000048240.15_1	chr10	-	3357	4	FSM	ENSMUSG00000048240.15	ENSMUST00000092285.10	3362	4	0	5	0	0	multi-exon	FALSE	canonical	2	3	junction_3	3.68178700572909	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGTCTCGACTCTAAAT	4444	False	NA	-5	True	AATAAA	-14	NA	80850759	80784462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80787581_80788664_80788781_80833825_80833879_80850689
ENSMUSG00000048249.15_1	chr17	+	7416	9	FSM	ENSMUSG00000048249.15	ENSMUST00000062519.14	7462	9	17	29	12	-29	multi-exon	FALSE	canonical	3	21	junction_1	7.89679523604354	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAGATGAAAAGAA	1297	False	NA	NA	False	NA	NA	NA	26934640	26995580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26934749_26955762_26955958_26958516_26958643_26961015_26962106_26976778_26976974_26978733_26978924_26981211_26981286_26982299_26982423_26990265
ENSMUSG00000048249.15_11	chr17	+	3918	1	ISM	ENSMUSG00000048249.15	ENSMUST00000062519.14	7462	9	57037	31	14985	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAATAAAAAAGATGAAAAG	NA	False	NA	NA	False	NA	NA	NA	26991660	26995578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_26991700_26995600
ENSMUSG00000048249.15_2	chr17	+	4540	6	NIC	ENSMUSG00000048249.15	novel	7462	9	NA	NA	11	-1495	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	13.5114766032436	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAAAATGTCAAGAATGGA	1296	False	NA	NA	False	AATAAA	-16	NA	26934639	26994114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26934749_26976778_26976974_26978733_26978924_26981211_26981286_26982299_26982423_26990265
ENSMUSG00000048249.15_4	chr17	+	5935	9	NIC	ENSMUSG00000048249.15	novel	7462	9	NA	NA	0	-1495	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	11.0841948286738	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAAAATGTCAAGAATGGA	1285	False	NA	NA	False	AATAAA	-16	NA	26934628	26994114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26934749_26955789_26955958_26958516_26958643_26961015_26962106_26976778_26976974_26978733_26978924_26981211_26981286_26982299_26982423_26990265
ENSMUSG00000048249.15_5	chr17	+	7278	8	NIC	ENSMUSG00000048249.15	novel	7462	9	NA	NA	24	-29	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	12.6491106406735	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAGATGAAAAGAA	1309	False	NA	NA	False	NA	NA	NA	26934652	26995580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26934749_26955762_26955958_26961015_26962106_26976778_26976974_26978733_26978924_26981211_26981286_26982299_26982423_26990265
ENSMUSG00000048249.15_9	chr17	+	6228	6	ISM	ENSMUSG00000048249.15	ENSMUST00000062519.14	7462	9	27149	31	-185	-31	3prime_fragment	FALSE	canonical	3	21	junction_1	7.30479294709987	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAATAAAAAAGATGAAAAG	8903	False	NA	NA	False	NA	NA	NA	26961772	26995578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_26962106_26976778_26976974_26978733_26978924_26981211_26981286_26982299_26982423_26990265
ENSMUSG00000048264.17_14	chr13	+	2227	1	ISM	ENSMUSG00000048264.17	ENSMUST00000174552.8	8023	37	390170	4	55892	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAGCAGTTTCTTAATT	NA	False	NA	22	True	AATAAA	-23	NA	9716733	9718960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_9716700_9719000
ENSMUSG00000048264.17_17	chr13	+	8014	37	NNC	ENSMUSG00000048264.17	novel	8023	37	NA	NA	7	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11.2194716101016	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATAGCAGTTTCTTAA	NA	False	NA	20	True	AATAAA	-21	NA	9326570	9718958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_9327105_9543138_9543213_9556614_9556726_9583287_9583414_9586691_9586902_9600219_9600355_9601781_9601902_9603309_9603508_9610706_9610799_9613149_9613261_9617866_9617991_9618336_9618447_9618626_9618730_9621085_9621151_9625169_9625264_9625397_9625518_9626839_9626955_9651392_9651533_9654524_9654662_9656358_9656568_9658979_9659095_9660732_9660935_9664382_9664493_9665780_9665862_9671914_9672039_9672617_9672740_9673792_9673905_9673993_9674104_9678008_9678140_9684757_9684927_9687130_9687302_9697014_9697077_9704638_9704697_9706672_9706748_9709280_9709456_9712172_9712297_9715813
ENSMUSG00000048264.17_18	chr13	+	8169	38	NNC	ENSMUSG00000048264.17	novel	8023	37	NA	NA	20	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13.7321768408689	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATAGCAGTTTCTTAA	NA	False	NA	20	True	AATAAA	-21	NA	9326583	9718958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_9327105_9543138_9543213_9544869_9545038_9556614_9556726_9583287_9583414_9586691_9586902_9600219_9600355_9601781_9601902_9603309_9603508_9610706_9610799_9613149_9613261_9617866_9617991_9618336_9618447_9618626_9618730_9621085_9621151_9625169_9625264_9625397_9625518_9626839_9626955_9651392_9651533_9654524_9654662_9656358_9656568_9658979_9659095_9660732_9660935_9664382_9664493_9665780_9665862_9671914_9672039_9672617_9672740_9673792_9673905_9673993_9674104_9678008_9678140_9684757_9684927_9687130_9687302_9697014_9697077_9704638_9704697_9706672_9706748_9709280_9709456_9712172_9712297_9715813
ENSMUSG00000048264.17_3	chr13	+	7012	33	ISM	ENSMUSG00000048264.17	ENSMUST00000174552.8	8023	37	260287	4	-73991	-4	3prime_fragment	FALSE	canonical	3	44	junction_4	6.30847644047277	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAGCAGTTTCTTAATT	NA	False	NA	22	True	AATAAA	-23	NA	9586850	9718960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_9586902_9600219_9600355_9601781_9601902_9603309_9603508_9610706_9610799_9613149_9613261_9617866_9617991_9618336_9618447_9618626_9618730_9621085_9621151_9625169_9625264_9625397_9625518_9626839_9626955_9651392_9651533_9654524_9654662_9656358_9656568_9658979_9659095_9660732_9660935_9664382_9664493_9665780_9665862_9671914_9672039_9672617_9672740_9673792_9673905_9673993_9674104_9678008_9678140_9684757_9684927_9687130_9687302_9697014_9697077_9704638_9704697_9706672_9706748_9709280_9709456_9712172_9712297_9715813
ENSMUSG00000048264.17_34	chr13	+	5257	18	ISM	ENSMUSG00000048264.17	ENSMUST00000174552.8	8023	37	329832	7	-4446	-7	3prime_fragment	FALSE	canonical	3	44	junction_4	7.04557580388605	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAAAATAGCAGTTTCTTA	NA	False	NA	19	True	AATAAA	-20	NA	9656395	9718957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_9656568_9658979_9659095_9660732_9660935_9664382_9664493_9665780_9665862_9671914_9672039_9672617_9672740_9673792_9673905_9673993_9674104_9678008_9678140_9684757_9684927_9687130_9687302_9697014_9697077_9704638_9704697_9706672_9706748_9709280_9709456_9712172_9712297_9715813
ENSMUSG00000048271.15_0	chr5	+	6378	19	NIC	ENSMUSG00000048271.15	novel	9510	19	NA	NA	-11	-6	combination_of_known_junctions	FALSE	canonical	3	35	junction_15	30.0263772928626	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCATTAACCCTCATCTG	NA	False	NA	1	True	CATAAA	-15	NA	28522163	28621097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28547392_28547513_28557469_28557642_28563271_28563481_28566943_28567233_28573252_28573312_28591484_28591618_28592644_28592989_28594500_28594816_28595881_28596170_28598999_28599669_28613252_28613460_28615568_28615758_28618284_28618374_28618565
ENSMUSG00000048271.15_1	chr5	+	3972	7	FSM	ENSMUSG00000048271.15	ENSMUST00000030920.6	3955	7	-35	18	-10	-18	multi-exon	FALSE	canonical	3	94	junction_6	25.4994553318737	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACTTATAATAAATTAG	NA	False	NA	NA	False	NA	NA	NA	28522164	28560559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28547392_28547513_28557469
ENSMUSG00000048271.15_10	chr5	+	6256	18	NIC	ENSMUSG00000048271.15	novel	6256	18	NA	NA	-10	-7	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	36.3348517719172	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGCATTAACCCTCATCT	NA	False	NA	0	True	CATAAA	-14	NA	28522164	28621096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28557469_28557642_28563271_28563481_28566943_28567233_28573252_28573312_28591484_28591618_28592644_28592989_28594500_28594816_28595881_28596170_28598999_28599669_28613252_28613460_28615568_28615758_28618284_28618374_28618565
ENSMUSG00000048271.15_2	chr5	+	6380	19	FSM	ENSMUSG00000048271.15	ENSMUST00000059644.13	9510	19	-10	3140	-10	-6	multi-exon	FALSE	canonical	3	71	junction_15	26.3991792801721	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCATTAACCCTCATCTG	NA	False	NA	1	True	CATAAA	-15	NA	28522164	28621097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28547392_28547513_28557469_28557642_28563271_28563481_28566943_28567233_28573252_28573312_28591484_28591618_28592644_28592989_28594500_28594816_28595881_28596170_28598999_28599669_28613249_28613460_28615568_28615758_28618284_28618374_28618565
ENSMUSG00000048271.15_3	chr5	+	6263	18	FSM	ENSMUSG00000048271.15	ENSMUST00000114884.8	6256	18	-13	6	-13	-6	multi-exon	TRUE	canonical	3	22	junction_5	33.4726040951925	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCATTAACCCTCATCTG	NA	False	NA	1	True	CATAAA	-15	NA	28522161	28621097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28557469_28557642_28563271_28563481_28566943_28567233_28573252_28573312_28591484_28591618_28592644_28592989_28594500_28594816_28595881_28596170_28598999_28599669_28613249_28613460_28615568_28615758_28618284_28618374_28618565
ENSMUSG00000048271.15_32	chr5	+	5231	12	ISM	ENSMUSG00000048271.15	ENSMUST00000114884.8	6256	18	41192	6	-35686	-6	3prime_fragment	FALSE	canonical	3	71	junction_8	14.3676634170667	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCATTAACCCTCATCTG	NA	False	NA	1	True	CATAAA	-15	NA	28563366	28621097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_28563481_28566943_28567233_28573252_28573312_28591484_28591618_28592644_28592989_28594500_28594816_28595881_28596170_28598999_28599669_28613249_28613460_28615568_28615758_28618284_28618374_28618565
ENSMUSG00000048271.15_4	chr5	+	3862	6	FSM	ENSMUSG00000048271.15	ENSMUST00000090355.11	1032	6	46	-2876	-10	-8	multi-exon	FALSE	canonical	3	22	junction_5	51.3443278269372	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATTAGATTTATTTTG	NA	False	NA	NA	False	AATAAA	-8	NA	28522164	28560569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28557469
ENSMUSG00000048271.15_41	chr5	+	3167	5	FSM	ENSMUSG00000048271.15	ENSMUST00000144967.8	1211	5	469	-2425	469	-3	multi-exon	FALSE	canonical	3	35	junction_1	33.0709464636257	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAACCCTCATCTGTGT	NA	False	NA	4	True	CATAAA	-18	NA	28599521	28621100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_28599669_28613252_28613460_28615568_28615758_28618284_28618374_28618565
ENSMUSG00000048271.15_42	chr5	+	3365	5	ISM	ENSMUSG00000048271.15	ENSMUST00000114884.8	6256	18	77149	6	271	-6	3prime_fragment	FALSE	canonical	3	71	junction_1	17.753520777581	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCATTAACCCTCATCTG	NA	False	NA	1	True	CATAAA	-15	NA	28599323	28621097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_28599669_28613249_28613460_28615568_28615758_28618284_28618374_28618565
ENSMUSG00000048271.15_43	chr5	+	2989	4	ISM	ENSMUSG00000048271.15	ENSMUST00000144967.8	1211	5	14228	-2422	-2378	-6	3prime_fragment	FALSE	canonical	3	107	junction_1	5.18544972870135	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCATTAACCCTCATCTG	NA	False	NA	1	True	CATAAA	-15	NA	28613280	28621097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_28613460_28615568_28615758_28618284_28618374_28618565
ENSMUSG00000048271.15_45	chr5	+	4287	1	Genic_Genomic	ENSMUSG00000048271.15	novel	NA	NA	NA	NA	4293	1	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTTGAAGAGTTTATTT	NA	False	NA	5	True	AATAAA	-17	NA	28619951	28624238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_+_28620000_28624200
ENSMUSG00000048277.16_0	chr11	+	1500	4	FSM	ENSMUSG00000048277.16	ENSMUST00000026649.14	1520	4	18	2	3	-2	multi-exon	FALSE	canonical	3	588	junction_1	45.536310297998	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGTGTTGTGCTGGGTGGC	NA	False	NA	12	True	AATAAA	-12	NA	117700511	117705107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117700630_117703284_117703523_117703871_117704012_117704103
ENSMUSG00000048277.16_2	chr11	+	1405	4	FSM	ENSMUSG00000048277.16	ENSMUST00000120928.2	1402	4	-5	2	-2	-2	multi-exon	FALSE	canonical	3	55	junction_1	286.604256772296	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGTGTTGTGCTGGGTGGC	NA	False	NA	12	True	AATAAA	-12	NA	117700516	117705107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117700630_117703374_117703523_117703871_117704012_117704103
ENSMUSG00000048279.20_0	chr14	+	15188	9	NIC	ENSMUSG00000048279.20	novel	4581	8	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	3.93700393700591	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAAAATCATTTTTGACT	NA	False	NA	6	True	AATAAA	-9	NA	61410438	61452937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_61410665_61410746_61410898_61416670_61416759_61418393_61418480_61421400_61421513_61427050_61427198_61428546_61430042_61430836_61430929_61440146
ENSMUSG00000048279.20_1	chr14	+	4386	1	ISM	ENSMUSG00000048279.20	ENSMUST00000119943.8	14991	9	63053	7	17632	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAATCATTTTTGACTGG	NA	False	NA	8	True	AATAAA	-11	NA	61448553	61452939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_61448600_61452900
ENSMUSG00000048279.20_4	chr14	+	13403	3	ISM	ENSMUSG00000048279.20	ENSMUST00000150222.2	4752	4	3252	-10554	-1414	-23	3prime_fragment	FALSE	canonical	1	2	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAAATGTATATAGAA	NA	False	NA	-8	True	NA	NA	NA	61429507	61452923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_61430042_61430836_61430929_61440146
ENSMUSG00000048280.19_2	chr13	-	2832	1	ISM	ENSMUSG00000048280.19	ENSMUST00000137496.10	13215	4	21951	0	229	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTAAAAAACAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	67809635	67806803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67806800_67809600
ENSMUSG00000048280.19_4	chr13	-	4495	4	FSM	ENSMUSG00000048280.19	ENSMUST00000175821.8	652	4	-17	-3826	-17	3826	multi-exon	FALSE	canonical	3	10	junction_1	5.09901951359278	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTTGTTATTTTATTTA	NA	False	NA	-2	True	NA	NA	NA	67831652	67815559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67819731_67821116_67821213_67821680_67821808_67831551
ENSMUSG00000048280.19_5	chr13	-	4536	4	NNC	ENSMUSG00000048280.19	novel	13215	4	NA	NA	-2	3826	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	5.79271573232759	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTTGTTATTTTATTTA	NA	False	NA	-2	True	NA	NA	NA	67831637	67815559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_67819731_67821116_67821213_67821680_67821808_67831495
ENSMUSG00000048280.19_6	chr13	-	4634	4	ISM	ENSMUSG00000048280.19	ENSMUST00000110973.3	683	5	415	-4012	415	3827	3prime_fragment	FALSE	canonical	2	5	junction_3	5.79271573232759	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTGTTATTTTATTTAT	NA	False	NA	-1	True	NA	NA	NA	67834775	67815558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67819731_67821116_67821213_67821680_67821808_67834536
ENSMUSG00000048280.19_8	chr13	-	2359	1	ISM	ENSMUSG00000048280.19	ENSMUST00000137496.10	13215	4	13667	8757	-8055	3825	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAGTTGTTATTTTATTT	NA	False	NA	-3	True	NA	NA	NA	67817919	67815560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67815600_67817900
ENSMUSG00000048281.10_0	chr14	-	1361	2	FSM	ENSMUSG00000048281.10	ENSMUST00000063169.10	1314	2	-47	0	37	0	multi-exon	FALSE	canonical	3	18	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGTCTAGCTTCTCTTAC	620	False	NA	NA	False	ATTAAA	-13	NA	62530459	62513679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_62514558_62529976
ENSMUSG00000048285.10_0	chr12	+	4675	14	NIC	ENSMUSG00000048285.10	novel	4662	14	NA	NA	-39	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	34.6862522431374	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTCTCTTGTTATTAT	748	False	NA	NA	False	AATAAA	-19	NA	70872248	70949006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933_70924014_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
ENSMUSG00000048285.10_14	chr12	+	5019	14	NIC	ENSMUSG00000048285.10	novel	2721	12	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	44.4026759681902	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTCTCTTGTTATTAT	964	False	NA	NA	False	AATAAA	-19	NA	70872464	70949006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_70872908_70910650_70910917_70919264_70919356_70923933_70924014_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
ENSMUSG00000048285.10_22	chr12	+	3209	4	ISM	ENSMUSG00000048285.10	ENSMUST00000220515.2	2191	13	22282	-2226	-1016	-2	3prime_fragment	FALSE	canonical	0	0	junction_2	46.9254728266003	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTCTCTTGTTATTAT	633	False	NA	NA	False	AATAAA	-19	NA	70940580	70949006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_70940717_70941650_70941783_70944115_70944208_70946157
ENSMUSG00000048285.10_24	chr12	+	2148	1	ISM	ENSMUSG00000048285.10	ENSMUST00000057859.9	4662	14	74568	5	5259	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGGTGTCTCTTGTTAT	6908	False	NA	NA	False	AATAAA	-16	NA	70946855	70949003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_70946900_70949000
ENSMUSG00000048285.10_3	chr12	+	4700	14	FSM	ENSMUSG00000048285.10	ENSMUST00000057859.9	4662	14	-40	2	-40	-2	multi-exon	FALSE	canonical	0	0	junction_12	41.9310507589719	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTCTCTTGTTATTAT	747	False	NA	NA	False	AATAAA	-19	NA	70872247	70949006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933_70924038_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
ENSMUSG00000048307.9_0	chr15	-	2461	5	FSM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	47	1	16	-1	multi-exon	FALSE	canonical	3	250	junction_4	35.6195171219375	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCATCGGCCATTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	36496919	36477814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022_36496140_36496872
ENSMUSG00000048307.9_2	chr15	-	1311	1	ISM	ENSMUSG00000048307.9	ENSMUST00000228630.2	4133	4	17810	1	17736	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCATCGGCCATTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	36479125	36477814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_36477800_36479100
ENSMUSG00000048307.9_3	chr15	-	2418	4	ISM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	823	1	718	-1	3prime_fragment	FALSE	canonical	3	290	junction_1	26.2466929133727	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCATCGGCCATTTTCTT	622	False	NA	NA	False	AATAAA	-17	NA	36496143	36477814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022
ENSMUSG00000048310.9_0	chr8	+	3276	3	FSM	ENSMUSG00000048310.9	ENSMUST00000049699.9	3255	3	2	-23	2	23	multi-exon	FALSE	canonical	3	44	junction_1	10	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACGCTGACTGTGCCATG	NA	False	NA	10	True	AATAAA	-40	NA	106627074	106658433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106627173_106639251_106640279_106656282
ENSMUSG00000048310.9_1	chr8	+	2576	2	ISM	ENSMUSG00000048310.9	ENSMUST00000049699.9	3255	3	12781	-23	12781	23	3prime_fragment	FALSE	canonical	3	64	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACGCTGACTGTGCCATG	3561	False	NA	10	True	AATAAA	-40	NA	106639853	106658433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106640279_106656282
ENSMUSG00000048310.9_2	chr8	+	1889	1	Genic_Genomic	ENSMUSG00000048310.9	novel	NA	NA	NA	NA	29474	25	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCTGACTGTGCCATGGG	2957	False	NA	12	True	AATAAA	-42	NA	106656546	106658435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_106656500_106658400
ENSMUSG00000048327.7_10	chr2	-	2537	6	ISM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	11482	3	11482	-3	3prime_fragment	FALSE	canonical	3	256	junction_2	37.2204245005346	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCTCTGCCTGTTGTTCT	NA	False	NA	-3	True	AATAAA	-17	NA	129127650	129110132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776
ENSMUSG00000048327.7_2	chr2	-	3100	9	FSM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	36	1	36	-1	multi-exon	TRUE	canonical	3	256	junction_2	30.0416377715996	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTGCCTGTTGTTCTCT	NA	False	NA	-1	True	AATAAA	-19	NA	129139096	129110130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
ENSMUSG00000048327.7_3	chr2	-	3103	9	NNC	ENSMUSG00000048327.7	novel	3137	9	NA	NA	30	-1	at_least_one_novel_splicesite	TRUE	canonical	3	74	junction_2	84.1037305950218	141	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTGCCTGTTGTTCTCT	NA	False	NA	-1	True	AATAAA	-19	NA	129139102	129110130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_129111184_129112494_129112679_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
ENSMUSG00000048330.15_0	chr7	-	2431	1	Genic_Genomic	ENSMUSG00000048330.15	novel	NA	NA	NA	NA	21119	37	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTTTGTCTAAAACTCC	NA	False	NA	NA	False	AATAAA	-12	NA	108635912	108633481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_108633500_108635900
ENSMUSG00000048330.15_10	chr7	-	1889	5	FSM	ENSMUSG00000048330.15	ENSMUST00000133876.2	3258	5	-3	1372	-3	-1372	multi-exon	FALSE	canonical	3	56	junction_3	4.55521678957215	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTAAAATATAATTGCAT	NA	False	NA	NA	False	ATTAAA	-14	NA	108682521	108645960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_108647304_108653571_108653666_108655950_108656024_108656989_108657217_108682369
ENSMUSG00000048330.15_2	chr7	-	4062	6	FSM	ENSMUSG00000048330.15	ENSMUST00000120876.2	1633	6	9	-2438	-2	-1198	multi-exon	FALSE	canonical	3	26	junction_2	14.7837748900611	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTCTACACAATTGAG	NA	False	NA	NA	False	AATAAA	-14	NA	108682520	108634716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_108638091_108647157_108647301_108653571_108653666_108655950_108656024_108656989_108657217_108682369
ENSMUSG00000048330.15_4	chr7	-	4065	6	FSM	ENSMUSG00000048330.15	ENSMUST00000055993.13	5281	6	18	1198	-2	-1198	multi-exon	FALSE	canonical	3	56	junction_4	4.1182520563948	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTCTACACAATTGAG	NA	False	NA	NA	False	AATAAA	-14	NA	108682520	108634716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_108638091_108647157_108647304_108653571_108653666_108655950_108656024_108656989_108657217_108682369
ENSMUSG00000048330.15_5	chr7	-	5041	5	NIC	ENSMUSG00000048330.15	novel	5281	6	NA	NA	-3	-1189	intron_retention	FALSE	canonical	3	62	junction_1	2.23606797749979	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAATTGAGGATTTTTTC	NA	False	NA	NA	False	AATAAA	-23	NA	108682521	108634707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_108638091_108647157_108647304_108653571_108653666_108655950_108657217_108682369
ENSMUSG00000048330.15_7	chr7	-	4167	6	NIC	ENSMUSG00000048330.15	novel	5281	6	NA	NA	-2	-1185	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	23.6845941489399	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAGGATTTTTTCTTAA	NA	False	NA	NA	False	AATAAA	-27	NA	108682520	108634703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_108638091_108647157_108647304_108653571_108653666_108655950_108656113_108656989_108657217_108682369
ENSMUSG00000048330.15_9	chr7	-	1900	5	ISM	ENSMUSG00000048330.15	ENSMUST00000120876.2	1633	6	-1	8801	-1	-1367	5prime_fragment	FALSE	canonical	3	26	junction_1	16.0312195418814	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATAATTGCATCATTT	NA	False	NA	NA	False	ATTAAA	-19	NA	108682530	108645955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_108647301_108653571_108653666_108655950_108656024_108656989_108657217_108682369
ENSMUSG00000048332.14_0	chr3	+	2082	4	FSM	ENSMUSG00000048332.14	ENSMUST00000059562.14	2108	4	22	4	-9	0	multi-exon	FALSE	canonical	0	0	junction_2	2.16024689946929	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGCTTACTGAGTCACCG	NA	False	NA	NA	False	AATAAA	-13	NA	52948970	53169096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_52949196_52950539_52951113_53139150_53139250_53167911
ENSMUSG00000048337.4_0	chr14	-	3665	2	FSM	ENSMUSG00000048337.4	ENSMUST00000052164.4	3627	2	-136	98	-136	-98	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGGTAATTGTTGT	NA	False	NA	NA	False	AATAAA	-4	NA	33874582	33866046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_33869346_33874216
ENSMUSG00000048349.10_0	chr14	-	2438	1	NIC	ENSMUSG00000048349.10	novel	4445	3	NA	NA	641	-611	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGCTTTGCAGGGTTTCCT	NA	False	NA	NA	False	AATAAA	-16	NA	104702160	104699722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_104699700_104702200
ENSMUSG00000048349.10_1	chr14	-	2498	2	NIC	ENSMUSG00000048349.10	novel	4445	3	NA	NA	-24	-784	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	0	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTTCTAATAATCTGC	NA	False	NA	NA	False	AATAAA	-15	NA	104705459	104699895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_104701981_104705046
ENSMUSG00000048351.15_0	chr4	+	876	3	FSM	ENSMUSG00000048351.15	ENSMUST00000131656.2	3714	3	29	2809	-9	52	multi-exon	FALSE	canonical	3	432	junction_2	33.5	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACACCTACGTTTATGGG	NA	False	NA	41	True	AGTAAA	-24	NA	108185365	108195932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_108185488_108189407_108189549_108195319
ENSMUSG00000048351.15_4	chr4	+	2249	1	Genic_Genomic	ENSMUSG00000048351.15	novel	NA	NA	NA	NA	11168	61	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTCGTGAGTATCAGC	3473	False	NA	NA	False	AATAAA	-25	NA	108196553	108198802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_108196600_108198800
ENSMUSG00000048355.3_0	chrX	+	1563	1	FSM	ENSMUSG00000048355.3	ENSMUST00000057625.3	1580	1	0	17	0	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTCCTTTCACACTCTGT	NA	False	NA	5	True	NA	NA	NA	134934115	134935678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134934100_134935700
ENSMUSG00000048371.9_0	chr8	+	5661	2	FSM	ENSMUSG00000048371.9	ENSMUST00000059588.8	5692	2	22	9	22	-9	multi-exon	FALSE	canonical	3	69	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGAAATTTGGCTTCCT	NA	False	NA	NA	False	AATAAA	-7	NA	105318104	105325649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_105318228_105320111
ENSMUSG00000048371.9_3	chr8	+	3234	1	ISM	ENSMUSG00000048371.9	ENSMUST00000059588.8	5692	2	4333	9	4333	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGAAATTTGGCTTCCT	NA	False	NA	NA	False	AATAAA	-7	NA	105322415	105325649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_105322400_105325600
ENSMUSG00000048373.9_0	chr5	-	1158	2	FSM	ENSMUSG00000048373.9	ENSMUST00000061299.9	1161	2	-2	5	-2	-2	multi-exon	FALSE	canonical	3	24	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATACCACTGTTTCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	44139108	44136206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_44137311_44139054
ENSMUSG00000048373.9_1	chr5	-	1208	3	FSM	ENSMUSG00000048373.9	ENSMUST00000199894.2	1228	3	15	5	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACCACTGTTTCCTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	44139106	44136204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_44137311_44137985_44138036_44139054
ENSMUSG00000048376.7_0	chr13	-	3310	2	FSM	ENSMUSG00000048376.7	ENSMUST00000059193.7	3336	2	26	0	26	0	multi-exon	FALSE	canonical	3	48	junction_1	0	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCATGCTTGGTGTCTG	NA	False	NA	NA	False	AATAAA	-3	NA	95754969	95738310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_95741446_95754794
ENSMUSG00000048376.7_1	chr13	-	2532	1	Genic_Genomic	ENSMUSG00000048376.7	novel	NA	NA	NA	NA	14159	6	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTGGTGTCTGGAATAG	NA	False	NA	NA	False	AATAAA	-9	NA	95740836	95738304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_95738300_95740800
ENSMUSG00000048379.10_0	chr14	+	4515	2	FSM	ENSMUSG00000048379.10	ENSMUST00000065562.6	6877	2	40	2322	40	-2322	multi-exon	FALSE	canonical	3	35	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGTAGAGATATATAAAGA	NA	False	NA	-4	True	AATAAA	-12	NA	47514427	47531237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_47514679_47526973
ENSMUSG00000048379.10_1	chr14	+	1395	1	ISM	ENSMUSG00000048379.10	ENSMUST00000065562.6	6877	2	13236	4541	13002	1525	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGTGCTCCTTTCTTAC	1528	False	NA	NA	False	AATAAA	-27	NA	47527623	47529018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_47527600_47529000
ENSMUSG00000048379.10_3	chr14	+	2091	1	ISM	ENSMUSG00000048379.10	ENSMUST00000065562.6	6877	2	17071	10	16837	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCAAAAGCTTTGTCGT	5363	False	NA	NA	False	AATAAA	-18	NA	47531458	47533549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_47531500_47533500
ENSMUSG00000048388.4_0	chr2	+	5603	8	FSM	ENSMUSG00000048388.4	ENSMUST00000051454.4	5614	8	4	7	4	-7	multi-exon	FALSE	canonical	1	2	junction_6	1.35526185435788	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTATGCTTGTAGTGTT	NA	False	NA	-4	True	AATAAA	-9	NA	83642983	83713823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_83643322_83683713_83683948_83685780_83685874_83688561_83688718_83690750_83690922_83707014_83707132_83708499_83708624_83709453
ENSMUSG00000048388.4_2	chr2	+	4276	1	ISM	ENSMUSG00000048388.4	ENSMUST00000051454.4	5614	8	66568	7	21116	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTATGCTTGTAGTGTT	3488	False	NA	-4	True	AATAAA	-9	NA	83709547	83713823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_83709500_83713800
ENSMUSG00000048402.15_0	chr1	-	6627	14	FSM	ENSMUSG00000048402.15	ENSMUST00000062483.15	6637	14	6	4	6	-4	multi-exon	FALSE	canonical	3	89	junction_11	11.3908506833309	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTTATCTTGTTGATCT	1235	False	NA	-7	True	ATTAAA	-13	NA	118981343	118761865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165_118783368_118794301_118794488_118795708_118795912_118818025_118818132_118929769_118929937_118981031
ENSMUSG00000048402.15_1	chr1	-	2871	1	ISM	ENSMUSG00000048402.15	ENSMUST00000062483.15	6637	14	216613	4	145582	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTTATCTTGTTGATCT	NA	False	NA	-7	True	ATTAAA	-13	NA	118764736	118761865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_118761900_118764700
ENSMUSG00000048402.15_5	chr1	-	6496	13	NIC	ENSMUSG00000048402.15	novel	6637	14	NA	NA	32	-3	combination_of_known_junctions	FALSE	canonical	1	7	junction_11	30.4743744808651	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTATCTTGTTGATCTG	1261	False	NA	-6	True	ATTAAA	-14	NA	118981317	118761864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165_118783368_118794301_118794488_118795708_118795912_118929769_118929937_118981031
ENSMUSG00000048406.6_0	chr4	+	1111	1	Genic_Genomic	ENSMUSG00000048406.6	novel	NA	NA	NA	NA	-30	-623	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAATAAATAATAAAA	NA	False	NA	NA	False	AAAAAG	-11	NA	141273469	141274580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_141273500_141274600
ENSMUSG00000048410.18_0	chr18	-	7898	9	FSM	ENSMUSG00000048410.18	ENSMUST00000125763.3	7909	9	3	8	3	-8	multi-exon	FALSE	canonical	3	22	junction_4	5.699506557589	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAAAGGTGGTGGTGTA	NA	False	NA	NA	False	AATAAA	-12	NA	84607626	84225833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_84228207_84333930_84334110_84361070_84361192_84369024_84369109_84372649_84372817_84450484_84450560_84570994_84571110_84576451_84581172_84607562
ENSMUSG00000048410.18_1	chr18	-	2787	5	ISM	ENSMUSG00000048410.18	ENSMUST00000125763.3	7909	9	234955	3	57871	-3	3prime_fragment	FALSE	canonical	3	22	junction_4	7.17635004720366	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTGGTGGTGTACTAAG	NA	False	NA	NA	False	AATAAA	-17	NA	84372674	84225828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_84228207_84333930_84334110_84361070_84361192_84369024_84369109_84372649
ENSMUSG00000048410.18_10	chr18	-	5160	2	ISM	ENSMUSG00000048410.18	ENSMUST00000125763.3	7909	9	35	350218	35	-5010	5prime_fragment	FALSE	canonical	3	30	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACATGCCTGAAATTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	84607594	84576043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_84581172_84607562
ENSMUSG00000048410.18_11	chr18	-	3180	8	NIC	ENSMUSG00000048410.18	novel	7909	9	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	1	2	junction_7	11.3820481640241	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAAAGGTGGTGGTGTA	NA	False	NA	NA	False	AATAAA	-12	NA	84607628	84225833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_84228207_84333930_84334110_84361070_84361192_84369024_84369109_84372649_84372817_84450484_84450560_84570994_84571110_84607562
ENSMUSG00000048410.18_12	chr18	-	2401	2	ISM	ENSMUSG00000048410.18	ENSMUST00000125763.3	7909	9	273671	8	96587	-8	3prime_fragment	FALSE	canonical	3	34	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAAAGGTGGTGGTGTA	5584	False	NA	NA	False	AATAAA	-12	NA	84333958	84225833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_84228207_84333930
ENSMUSG00000048410.18_2	chr18	-	1792	1	ISM	ENSMUSG00000048410.18	ENSMUST00000125763.3	7909	9	380004	8	202920	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAAAGGTGGTGGTGTA	NA	False	NA	NA	False	AATAAA	-12	NA	84227625	84225833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_84225800_84227600
ENSMUSG00000048410.18_5	chr18	-	4916	8	ISM	ENSMUSG00000048410.18	ENSMUST00000125763.3	7909	9	29373	11	-1706	-11	3prime_fragment	FALSE	canonical	3	22	junction_4	6.08779307218929	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAACTAAAGGTGGTGGT	NA	False	NA	NA	False	AATAAA	-9	NA	84578256	84225836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_84228207_84333930_84334110_84361070_84361192_84369024_84369109_84372649_84372817_84450484_84450560_84570994_84571110_84576451
ENSMUSG00000048410.18_8	chr18	-	7760	7	NIC	ENSMUSG00000048410.18	novel	7909	9	NA	NA	-4622	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	12.7497276659369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAAAGGTGGTGGTGTA	8757	False	NA	NA	False	AATAAA	-12	NA	84581172	84225833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_84228207_84333930_84334110_84361070_84361192_84369024_84369109_84372649_84372817_84570994_84571110_84576451
ENSMUSG00000048416.16_0	chr3	+	1084	7	FSM	ENSMUSG00000048416.16	ENSMUST00000077916.12	1114	7	30	0	2	0	multi-exon	FALSE	canonical	3	41	junction_1	4.04145188432738	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGTGGTTAAATTGGT	NA	False	NA	1	True	AATAAA	-14	NA	67281459	67307331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_67281596_67291883_67292032_67300224_67300309_67301267_67301397_67302584_67302745_67305113_67305244_67307034
ENSMUSG00000048429.11_0	chr9	+	2926	2	FSM	ENSMUSG00000048429.11	ENSMUST00000062125.11	3170	2	219	25	219	-25	multi-exon	FALSE	canonical	3	163	junction_1	0	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAAATAGTCTTATTCAC	4730	False	NA	9	True	ATTAAA	-18	NA	21504236	21507241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21504367_21504445
ENSMUSG00000048429.11_1	chr9	+	2538	1	ISM	ENSMUSG00000048429.11	ENSMUST00000062125.11	3170	2	686	25	686	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAAATAGTCTTATTCAC	5197	False	NA	9	True	ATTAAA	-18	NA	21504703	21507241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_21504700_21507200
ENSMUSG00000048439.16_0	chr5	+	2854	7	FSM	ENSMUSG00000048439.16	ENSMUST00000049887.13	2914	7	42	18	5	-18	multi-exon	TRUE	canonical	3	52	junction_5	7.43116560320265	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAATATAGATAAACATG	5188	False	NA	NA	False	NA	NA	NA	24370002	24388993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24380451_24380529_24382997_24383085_24386078_24386164_24386905
ENSMUSG00000048439.16_1	chr5	+	2694	3	ISM	ENSMUSG00000048439.16	ENSMUST00000115101.4	1624	6	-2	11277	-2	1679	5prime_fragment	FALSE	canonical	3	61	junction_2	8	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	5181	False	NA	NA	False	NA	NA	NA	24369995	24376558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_24370202_24372340_24372564_24374293
ENSMUSG00000048439.16_3	chr5	+	1615	6	FSM	ENSMUSG00000048439.16	ENSMUST00000115101.4	1624	6	-2	11	-2	-11	multi-exon	FALSE	canonical	2	3	junction_3	25.7013618316229	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGTCAATAAGCAAGG	5181	False	NA	NA	False	AATAAA	-9	NA	24369995	24387824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24382997_24383085_24386078_24386164_24386905
ENSMUSG00000048439.16_7	chr5	+	1428	1	ISM	ENSMUSG00000048439.16	ENSMUST00000049887.13	2914	7	17616	7	4675	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACATGGACTGTCTGTT	4022	False	NA	NA	False	NA	NA	NA	24387576	24389004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_24387600_24389000
ENSMUSG00000048440.17_1	chr17	+	2205	13	FSM	ENSMUSG00000048440.17	ENSMUST00000003416.15	2227	13	16	6	-1	-5	multi-exon	FALSE	canonical	3	62	junction_12	10.7625895273086	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGACTAGCATGTCTTGG	NA	False	NA	14	True	NA	NA	NA	32755558	32770765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_32755630_32755971_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ENSMUSG00000048440.17_10	chr17	+	2074	12	NIC	ENSMUSG00000048440.17	novel	2227	13	NA	NA	2	-5	combination_of_known_junctions	TRUE	canonical	3	16	junction_2	20.9331876957963	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGACTAGCATGTCTTGG	NA	False	NA	14	True	NA	NA	NA	32755544	32770765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_32755630_32755971_32756171_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ENSMUSG00000048440.17_12	chr17	+	2740	13	NIC	ENSMUSG00000048440.17	novel	2227	13	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	7	junction_6	22.1973471888472	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGACTAGCATGTCTTGG	NA	False	NA	14	True	NA	NA	NA	32755575	32770765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_32755630_32755971_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763304_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ENSMUSG00000048440.17_28	chr17	+	2075	12	FSM	ENSMUSG00000048440.17	ENSMUST00000165515.8	2078	12	1	2	1	0	multi-exon	FALSE	canonical	3	16	junction_2	22.7559818672762	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATGTCTTGGTTCCA	NA	False	NA	19	True	NA	NA	NA	32755551	32770770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_32755630_32755968_32756171_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ENSMUSG00000048440.17_3	chr17	+	2201	13	FSM	ENSMUSG00000048440.17	ENSMUST00000169591.8	2242	13	34	7	-3	-5	multi-exon	FALSE	canonical	3	41	junction_1	14.6806278249036	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGACTAGCATGTCTTGG	NA	False	NA	14	True	NA	NA	NA	32755565	32770765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_32755630_32755968_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ENSMUSG00000048440.17_7	chr17	+	2403	12	NIC	ENSMUSG00000048440.17	novel	2242	13	NA	NA	4	-8	intron_retention	FALSE	canonical	3	41	junction_1	15.2992194474908	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACAGACTAGCATGTCT	NA	False	NA	11	True	NA	NA	NA	32755554	32770762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_32755630_32755968_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ENSMUSG00000048440.17_8	chr17	+	786	7	ISM	ENSMUSG00000048440.17	ENSMUST00000003416.15	2227	13	14	6850	-3	522	5prime_fragment	FALSE	canonical	3	71	junction_3	12.7725834852973	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCTTCTTGTTCGTTGAC	NA	False	NA	NA	False	AATAAA	-12	NA	32755556	32763921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_32755630_32755971_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856
ENSMUSG00000048445.7_0	chr11	-	534	2	NNC	ENSMUSG00000048445.7	novel	1164	6	NA	NA	20976	-3	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTGTCTGTCTTGTCCT	4480	False	NA	-1	True	ATTAAA	-25	NA	120743521	120717357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_120717751_120743380
ENSMUSG00000048445.7_10	chr11	-	3437	15	NIC	ENSMUSG00000048445.7	novel	3403	19	NA	NA	25	-3980	combination_of_known_splicesites	FALSE	canonical	2	2	junction_2	8.61891607371335	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTACCCTTGTTCTTG	1496	False	NA	NA	False	AGTAAA	-19	NA	120823673	120768597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120769875_120772640_120772742_120772838_120772882_120776058_120776212_120776675_120776890_120785424_120785560_120786082_120786246_120788634_120788794_120792700_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
ENSMUSG00000048445.7_13	chr11	-	1382	7	ISM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	25	75156	25	-27893	5prime_fragment	FALSE	canonical	3	22	junction_2	1.37436854187255	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTTACTTGTGATAAGTG	1496	False	NA	NA	False	NA	NA	NA	120823673	120792510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
ENSMUSG00000048445.7_16	chr11	-	2877	3	ISM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	47	90701	47	-43438	5prime_fragment	FALSE	canonical	3	22	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAGACAATAA	1518	False	NA	NA	False	NA	NA	NA	120823651	120808055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120810408_120812345_120812761_120823541
ENSMUSG00000048445.7_3	chr11	-	2508	15	ISM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	29302	2	-17659	-2	3prime_fragment	FALSE	canonical	2	6	junction_6	6.15281584781658	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGTCTGTCTTGTCCTA	1991	False	NA	0	True	ATTAAA	-26	NA	120794396	120717356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120717751_120751226_120751453_120751963_120752096_120757380_120757503_120764411_120764626_120769703_120769875_120772640_120772742_120776058_120776212_120776675_120776890_120785424_120785560_120786082_120786246_120788634_120788794_120792700_120792902_120794141_120794217_120794348
ENSMUSG00000048445.7_4	chr11	-	3365	19	FSM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	27	11	27	2	multi-exon	FALSE	canonical	2	6	junction_6	6.51399253648882	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTGTGAAGTTGTCTGT	1498	False	NA	-9	True	ATTAAA	-17	NA	120823671	120717365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120717751_120751226_120751453_120751963_120752096_120757380_120757503_120764411_120764626_120769703_120769875_120772640_120772742_120776058_120776212_120776675_120776890_120785424_120785560_120786082_120786246_120788634_120788794_120792700_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
ENSMUSG00000048450.11_0	chr5	-	1922	2	FSM	ENSMUSG00000048450.11	ENSMUST00000063116.10	1935	2	2	11	1	-11	multi-exon	FALSE	canonical	2	10	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGAAATGATGTCTGTGG	NA	False	NA	NA	False	AATAAA	-14	NA	37981925	37977839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_37979045_37981208
ENSMUSG00000048450.11_1	chr5	-	3896	1	FSM	ENSMUSG00000048450.11	ENSMUST00000183013.2	1880	1	4	-2020	4	-198	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAGAAGTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37981922	37978026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_37978000_37981900
ENSMUSG00000048478.8_0	chr8	+	520	3	FSM	ENSMUSG00000048478.8	ENSMUST00000060133.8	491	3	-30	1	14	-1	multi-exon	FALSE	canonical	3	11	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGGGATCCTTTCCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	123939592	123948782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123939737_123939826_123939977_123948556
ENSMUSG00000048478.8_1	chr8	+	415	2	FSM	ENSMUSG00000048478.8	ENSMUST00000212637.2	569	2	150	4	150	-2	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGGGATCCTTTCCTG	NA	False	NA	NA	False	AATAAA	-13	NA	123939786	123948781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123939977_123948556
ENSMUSG00000048478.8_2	chr8	+	2979	3	FSM	ENSMUSG00000048478.8	ENSMUST00000212161.2	2941	3	-44	6	0	-6	multi-exon	FALSE	canonical	1	1	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGACATAAAATGTTATAG	NA	False	NA	NA	False	NA	NA	NA	123939570	123943638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123939737_123939826_123940054_123941052
ENSMUSG00000048481.16_0	chr7	+	2136	3	FSM	ENSMUSG00000048481.16	ENSMUST00000059331.9	2173	3	29	8	29	-8	multi-exon	FALSE	canonical	2	7	junction_2	1	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAATTAACTTGAGGCTC	6993	False	NA	NA	False	AATAAA	-10	NA	18725198	18735681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18725280_18725756_18726546_18734415
ENSMUSG00000048481.16_1	chr7	+	2056	2	ISM	ENSMUSG00000048481.16	ENSMUST00000131087.2	1951	3	512	10	-138	-8	3prime_fragment	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAATTAACTTGAGGCTC	7550	False	NA	NA	False	AATAAA	-10	NA	18725755	18735681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_18726546_18734415
ENSMUSG00000048482.15_0	chr2	+	1449	2	FSM	ENSMUSG00000048482.15	ENSMUST00000111045.9	3973	2	17	2507	17	-2507	multi-exon	FALSE	canonical	2	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAACAAAAA	NA	False	NA	NA	False	AATAAA	-26	NA	109523924	109554845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_109524255_109553726
ENSMUSG00000048482.15_1	chr2	+	1373	1	ISM	ENSMUSG00000048482.15	ENSMUST00000053317.12	4266	2	48827	2108	14144	-2108	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAAAATGCTCACACTCC	NA	False	NA	NA	False	AATAAA	-14	NA	109553871	109555244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_109553900_109555200
ENSMUSG00000048485.13_0	chr4	-	2568	3	ISM	ENSMUSG00000048485.13	ENSMUST00000053042.6	3288	4	7677	505	-612	-1	3prime_fragment	FALSE	canonical	2	5	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTTTGCTTGTATTTT	8416	False	NA	-1	True	ATTAAA	-14	NA	129326934	129320062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129321621_129322220_129322400_129326103
ENSMUSG00000048485.13_1	chr4	-	2777	4	FSM	ENSMUSG00000048485.13	ENSMUST00000053042.6	3288	4	5	506	5	-2	multi-exon	FALSE	canonical	2	5	junction_2	3.09120616516523	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGGTTTGCTTGTATTT	744	False	NA	-2	True	ATTAAA	-13	NA	129334606	129320063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129321621_129322220_129322400_129326103_129327105_129334566
ENSMUSG00000048486.7_0	chr2	-	2002	2	FSM	ENSMUSG00000048486.7	ENSMUST00000109418.2	3967	2	31	1934	31	-1934	multi-exon	FALSE	canonical	3	58	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAGTTGATGAATGTTAAG	NA	False	NA	NA	False	AATAAA	-19	NA	163314518	163310232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_163312039_163314322
ENSMUSG00000048486.7_2	chr2	-	3325	1	ISM	ENSMUSG00000048486.7	ENSMUST00000109418.2	3967	2	2924	2	2924	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTCCGGAGTTTGCTGT	NA	False	NA	-10	True	ATTAAA	-23	NA	163311625	163308300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_163308300_163311600
ENSMUSG00000048486.7_3	chr2	-	3473	3	NNC	ENSMUSG00000048486.7	novel	3967	2	NA	NA	30	-2	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	26.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTCCGGAGTTTGCTGT	NA	False	NA	-10	True	ATTAAA	-23	NA	163314519	163308300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_163310338_163310799_163312039_163314322
ENSMUSG00000048490.15_1	chr16	-	3901	1	ISM	ENSMUSG00000048490.15	ENSMUST00000121927.8	7868	4	82515	12	32346	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACATATACTTTGTCCT	5789	False	NA	NA	False	AATAAA	-8	NA	76088200	76084299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_76084300_76088200
ENSMUSG00000048490.15_2	chr16	-	7682	4	FSM	ENSMUSG00000048490.15	ENSMUST00000054178.8	4529	4	-26	-3127	-26	-335	multi-exon	FALSE	canonical	3	43	junction_1	2.86744175568088	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTGAAATGGCTTCTTT	NA	False	NA	-7	True	AATAAA	-19	NA	76169963	76084622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_76091904_76127633_76127753_76149359_76149438_76169759
ENSMUSG00000048490.15_3	chr16	-	7569	3	FSM	ENSMUSG00000048490.15	ENSMUST00000231304.2	540	3	-39	-6990	-34	-337	multi-exon	FALSE	canonical	2	16	junction_1	15.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAACTTGAAATGGCTTCT	NA	False	NA	-9	True	AATAAA	-17	NA	76169971	76084624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_76091904_76149359_76149438_76169759
ENSMUSG00000048490.15_4	chr16	-	7678	4	NIC	ENSMUSG00000048490.15	novel	7868	4	NA	NA	-24	-334	combination_of_known_junctions	FALSE	canonical	3	29	junction_3	8.73053390247253	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGAAATGGCTTCTTTT	NA	False	NA	-6	True	AATAAA	-20	NA	76169961	76084621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_76091904_76127633_76127753_76149359_76149435_76169759
ENSMUSG00000048490.15_5	chr16	-	7474	3	ISM	ENSMUSG00000048490.15	ENSMUST00000121927.8	7868	4	21280	337	20490	-337	3prime_fragment	FALSE	canonical	3	43	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAACTTGAAATGGCTTCT	NA	False	NA	-9	True	AATAAA	-17	NA	76149435	76084624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_76091904_76127633_76127753_76149359
ENSMUSG00000048495.17_0	chr1	-	1184	8	FSM	ENSMUSG00000048495.17	ENSMUST00000079998.13	1398	8	204	10	1	-10	multi-exon	FALSE	canonical	3	102	junction_6	15.7025930524684	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATAAAGTCTATTGGT	NA	False	NA	-28	True	AATAAA	-33	NA	57445629	57427408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440546_57440683_57445542
ENSMUSG00000048495.17_1	chr1	-	1210	8	FSM	ENSMUSG00000048495.17	ENSMUST00000162686.8	1847	8	624	13	-6	-10	multi-exon	FALSE	canonical	3	47	junction_6	29.7341966257639	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATAAAGTCTATTGGT	NA	False	NA	-28	True	AATAAA	-33	NA	57445636	57427408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440527_57440683_57445542
ENSMUSG00000048495.17_4	chr1	-	1285	9	NIC	ENSMUSG00000048495.17	novel	766	9	NA	NA	7	-13	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	51.4306268190463	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTACATAAAGTCTATT	NA	False	NA	-31	True	AATAAA	-30	NA	57445623	57427411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57432743_57432854_57433205_57433251_57435885_57435956_57440546_57440683_57445542
ENSMUSG00000048495.17_5	chr1	-	1213	9	FSM	ENSMUSG00000048495.17	ENSMUST00000160837.8	766	9	-28	-419	0	-7	multi-exon	FALSE	canonical	3	10	junction_4	49.931828526502	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAAGTCTATTGGTGGA	NA	False	NA	-25	True	AATAAA	-36	NA	57445630	57427405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57432828_57432854_57433205_57433251_57435885_57435956_57440546_57440683_57445542
ENSMUSG00000048495.17_7	chr1	-	1872	7	NIC	ENSMUSG00000048495.17	novel	1398	8	NA	NA	1	-12	intron_retention	FALSE	canonical	3	102	junction_5	16.6774964814533	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTACATAAAGTCTATTG	NA	False	NA	-30	True	AATAAA	-31	NA	57445629	57427410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_57427912_57429800_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440546_57440683_57445542
ENSMUSG00000048495.17_9	chr1	-	1396	8	NIC	ENSMUSG00000048495.17	novel	766	9	NA	NA	1	-5	intron_retention	FALSE	canonical	3	11	junction_4	41.2820067539437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTCTATTGGTGGAGT	NA	False	NA	-23	True	AATAAA	-38	NA	57445629	57427403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432854_57433205_57433251_57435885_57435956_57440546_57440683_57445542
ENSMUSG00000048497.12_0	chr11	+	2188	2	FSM	ENSMUSG00000048497.12	ENSMUST00000062860.5	343	2	-354	-1491	-354	-4	multi-exon	FALSE	canonical	3	15	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGACTGAGTCTGTGTCT	NA	False	NA	-2	True	NA	NA	NA	62539135	62557176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62539643_62555495
ENSMUSG00000048497.12_2	chr11	+	2430	3	FSM	ENSMUSG00000048497.12	ENSMUST00000148696.2	366	3	-506	-1558	-353	-7	multi-exon	FALSE	canonical	1	1	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGACTGAGTCTGTG	NA	False	NA	-5	True	NA	NA	NA	62539136	62557173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62539683_62550989_62551196_62555495
ENSMUSG00000048497.12_5	chr11	+	1210	3	NNC	ENSMUSG00000048497.12	novel	589	2	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGAGTCTGTGTCTGGT	NA	False	NA	1	True	NA	NA	NA	62539649	62557179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_62539683_62555495_62556063_62556569
ENSMUSG00000048497.12_6	chr11	+	1718	2	FSM	ENSMUSG00000048497.12	ENSMUST00000155759.3	589	2	-15	-1114	0	-4	multi-exon	FALSE	canonical	3	16	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGACTGAGTCTGTGTCT	NA	False	NA	-2	True	NA	NA	NA	62539645	62557176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62539683_62555495
ENSMUSG00000048503.8_0	chr9	-	3461	3	FSM	ENSMUSG00000048503.8	ENSMUST00000061833.6	3503	3	33	9	-1	-9	multi-exon	FALSE	canonical	3	19	junction_1	3	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCAGAGTCTGCCTTCG	NA	False	NA	NA	False	AATAAA	-13	NA	43027832	43019953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_43023154_43024755_43024956_43027771
ENSMUSG00000048503.8_1	chr9	-	3536	3	FSM	ENSMUSG00000048503.8	ENSMUST00000213544.2	2463	3	15	-1088	4	-1	multi-exon	FALSE	canonical	0	0	junction_2	9.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGCCTTCGTATCTTTG	NA	False	NA	NA	False	AATAAA	-21	NA	43027824	43019945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_43023154_43024755_43024956_43027696
ENSMUSG00000048503.8_3	chr9	-	2136	1	ISM	ENSMUSG00000048503.8	ENSMUST00000061833.6	3503	3	5776	9	5739	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCAGAGTCTGCCTTCG	NA	False	NA	NA	False	AATAAA	-13	NA	43022089	43019953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_43020000_43022100
ENSMUSG00000048503.8_4	chr9	-	3378	2	ISM	ENSMUSG00000048503.8	ENSMUST00000061833.6	3503	3	2932	9	2895	-9	3prime_fragment	FALSE	canonical	3	19	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCAGAGTCTGCCTTCG	NA	False	NA	NA	False	AATAAA	-13	NA	43024933	43019953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_43023154_43024755
ENSMUSG00000048503.8_5	chr9	-	5055	2	NIC	ENSMUSG00000048503.8	novel	3503	3	NA	NA	3	-10	intron_retention	FALSE	canonical	3	25	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACCCAGAGTCTGCCTTC	NA	False	NA	NA	False	AATAAA	-12	NA	43027825	43019954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_43024956_43027771
ENSMUSG00000048528.8_0	chr7	-	3252	2	FSM	ENSMUSG00000048528.8	ENSMUST00000054562.4	3264	2	8	4	8	-4	multi-exon	FALSE	canonical	3	59	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATTTTTGACGAATTAT	NA	False	NA	NA	False	AATAAA	-13	NA	132201358	132196610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_132199546_132201041
ENSMUSG00000048528.8_1	chr7	-	1775	1	ISM	ENSMUSG00000048528.8	ENSMUST00000054562.4	3264	2	2985	0	2985	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTGACGAATTATTCAT	NA	False	NA	NA	False	AATAAA	-17	NA	132198381	132196606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_132196600_132198400
ENSMUSG00000048528.8_3	chr7	-	3178	3	NNC	ENSMUSG00000048528.8	novel	3264	2	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCATTTTTGACGAATTA	NA	False	NA	NA	False	AATAAA	-12	NA	132201358	132196611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_132198239_132198311_132199546_132201041
ENSMUSG00000048537.17_1	chr9	-	2983	13	NIC	ENSMUSG00000048537.17	novel	3589	17	NA	NA	-90	-3	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	9.3392838174146	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACATGAGTGTGGAAGT	NA	False	NA	-5	True	AATAAA	-13	NA	44619814	44597609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609015_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44619690
ENSMUSG00000048537.17_10	chr9	-	3045	13	NIC	ENSMUSG00000048537.17	novel	3485	16	NA	NA	-70	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_12	9.86963637740632	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAGTGTGGAAGTCTGA	NA	False	NA	-1	True	AATAAA	-17	NA	44619794	44597605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44619579
ENSMUSG00000048537.17_15	chr9	-	4922	18	NIC	ENSMUSG00000048537.17	novel	5600	23	NA	NA	94	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	13.2343790533344	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACATGAGTGTGGAAGT	NA	False	NA	-5	True	AATAAA	-13	NA	44632590	44597609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609015_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44622219_44622358_44622444_44622586_44622937_44623220_44626610_44627963_44629570_44629697_44632566
ENSMUSG00000048537.17_22	chr9	-	879	1	ISM	ENSMUSG00000048537.17	ENSMUST00000147495.8	5424	22	40912	6	9243	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGAGTGTGGAAGTCTG	6872	False	NA	-2	True	AATAAA	-16	NA	44598485	44597606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44597600_44598500
ENSMUSG00000048537.17_26	chr9	-	5370	21	NIC	ENSMUSG00000048537.17	novel	5461	22	NA	NA	-18	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_12	12.916655913974	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAGTGTGGAAGTCTGA	2348	False	NA	-1	True	AATAAA	-17	NA	44646513	44597605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609015_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44622219_44622358_44622444_44622586_44622937_44623220_44626610_44627963_44629570_44629697_44637306_44637478_44638347_44638472_44639316_44639398_44646421
ENSMUSG00000048537.17_28	chr9	-	5452	22	NIC	ENSMUSG00000048537.17	novel	5461	22	NA	NA	-8	-3	combination_of_known_junctions	FALSE	canonical	1	2	junction_13	12.2842376373573	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACATGAGTGTGGAAGT	2358	False	NA	-5	True	AATAAA	-13	NA	44646503	44597609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44619690_44619820_44622219_44622358_44622444_44622586_44622937_44623220_44626610_44627963_44629570_44629697_44637306_44637478_44638347_44638472_44639316_44639398_44646421
ENSMUSG00000048537.17_4	chr9	-	2941	13	ISM	ENSMUSG00000048537.17	ENSMUST00000144251.8	3589	17	4733	4	-80	-2	3prime_fragment	FALSE	canonical	3	19	junction_8	6.21601873299051	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACATGAGTGTGGAAGTC	NA	False	NA	-4	True	AATAAA	-14	NA	44619804	44597608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44619690
ENSMUSG00000048537.17_8	chr9	-	5329	21	NIC	ENSMUSG00000048537.17	novel	5461	22	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_12	12.5757703541374	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGAGTGTGGAAGTCTG	2355	False	NA	-2	True	AATAAA	-16	NA	44646506	44597606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44622219_44622358_44622444_44622586_44622937_44623220_44626610_44627963_44629570_44629697_44637306_44637478_44638347_44638472_44639316_44639398_44646421
ENSMUSG00000048546.9_0	chr15	-	3946	2	FSM	ENSMUSG00000048546.9	ENSMUST00000050467.9	4151	2	197	8	35	-8	multi-exon	FALSE	canonical	3	45	junction_1	0	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATAGCCTTCTGCCTA	NA	False	NA	-16	True	ATTAAA	-9	NA	81742489	81732480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81736074_81742136
ENSMUSG00000048546.9_1	chr15	-	2860	1	ISM	ENSMUSG00000048546.9	ENSMUST00000050467.9	4151	2	7348	6	7186	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATAGCCTTCTGCCTACT	NA	False	NA	-14	True	ATTAAA	-11	NA	81735338	81732478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_81732500_81735300
ENSMUSG00000048550.18_0	chr2	+	2604	3	FSM	ENSMUSG00000048550.18	ENSMUST00000054591.10	3899	3	17	1278	2	452	multi-exon	FALSE	canonical	3	53	junction_1	4.5	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATAGCATTTGCTTTATT	4801	False	NA	13	True	AATAAA	-22	NA	21210551	21218542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_21210657_21214695_21214853_21216200
ENSMUSG00000048550.18_7	chr2	+	1667	1	ISM	ENSMUSG00000048550.18	ENSMUST00000054591.10	3899	3	6338	1281	6275	449	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACAATAGCATTTGCTTT	NA	False	NA	10	True	AATAAA	-19	NA	21216872	21218539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_21216900_21218500
ENSMUSG00000048574.10_0	chr7	-	1480	1	FSM	ENSMUSG00000048574.10	ENSMUST00000155338.2	1287	1	-85	-108	-85	108	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTCATTTAAAAAAAAAAGAA	NA	False	NA	NA	False	AATAAA	-12	NA	41756694	41755214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_41755200_41756700
ENSMUSG00000048578.12_1	chr5	-	3130	1	ISM	ENSMUSG00000048578.12	ENSMUST00000112121.6	5955	5	12066	3	4933	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	457	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCCGTGTTGAGAGTGA	NA	False	NA	-6	True	AATAAA	-13	NA	115284172	115281042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_115281000_115284200
ENSMUSG00000048578.12_2	chr5	-	5943	5	FSM	ENSMUSG00000048578.12	ENSMUST00000112121.6	5955	5	5	7	5	-7	multi-exon	FALSE	canonical	3	1139	junction_2	31.3249102153542	1974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATACTCCGTGTTGAGA	4729	False	NA	-10	True	AATAAA	-9	NA	115296233	115281046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115286204_115288127_115288186_115288266_115288444_115288874_115289054_115295861
ENSMUSG00000048581.13_0	chr3	-	1545	5	FSM	ENSMUSG00000048581.13	ENSMUST00000061706.7	1640	5	88	7	7	-7	multi-exon	FALSE	canonical	3	41	junction_2	6.68487097856047	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACATTCTTTCTGAG	NA	False	NA	NA	False	AATAAA	-8	NA	63836805	63822111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_63823160_63827621_63827783_63832754_63832903_63834684_63834745_63836677
ENSMUSG00000048581.13_2	chr3	-	6004	4	NIC	ENSMUSG00000048581.13	novel	1640	5	NA	NA	10	-7	intron_retention	FALSE	canonical	3	41	junction_1	5.73488351136175	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACATTCTTTCTGAG	NA	False	NA	NA	False	AATAAA	-8	NA	63836802	63822111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_63827783_63832754_63832903_63834684_63834745_63836677
ENSMUSG00000048582.8_0	chr14	-	2656	2	FSM	ENSMUSG00000048582.8	ENSMUST00000223792.2	284	2	12	-2384	12	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCGCTGTGTAAGAACGTG	NA	False	NA	NA	False	AATAAA	-15	NA	57295168	57271916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_57274388_57294983
ENSMUSG00000048602.10_0	chr17	-	3659	2	FSM	ENSMUSG00000048602.10	ENSMUST00000053896.8	3712	2	44	9	-7	-9	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATTTATTTTGCTTTTC	246	False	NA	NA	False	TATAAA	-8	NA	33358613	33354570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33357797_33358180
ENSMUSG00000048603.9_2	chr13	+	239	1	FSM	ENSMUSG00000048603.9	ENSMUST00000062252.2	883	1	644	0	-3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGCTAATGTTGCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	98453573	98453812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_98453600_98453800
ENSMUSG00000048612.17_2	chr19	-	6791	55	NNC	ENSMUSG00000048612.17	novel	6633	54	NA	NA	-17	-5	at_least_one_novel_splicesite	TRUE	canonical	3	26	junction_16	31.7375046969603	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGGATGTTTGTCCTC	8880	False	NA	-6	True	AATAAA	-15	NA	38031823	37887680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909259_37909783_37909940_37911405_37911532_37913053_37913153_37915430_37915443_37916801_37916859_37919433_37919511_37921050_37921217_37923207_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
ENSMUSG00000048612.17_3	chr19	-	6748	54	FSM	ENSMUSG00000048612.17	ENSMUST00000226068.2	6633	54	-38	-77	10	-5	multi-exon	FALSE	canonical	3	86	junction_16	23.3368693179296	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGGATGTTTGTCCTC	8866	False	NA	-6	True	AATAAA	-15	NA	38031837	37887680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909259_37909783_37909940_37911405_37911532_37913053_37913153_37915430_37915443_37919433_37919511_37921050_37921217_37923207_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
ENSMUSG00000048612.17_4	chr19	-	6743	53	NIC	ENSMUSG00000048612.17	novel	6633	54	NA	NA	0	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	30.1745109234177	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACACATGGATGTTTGTC	8856	False	NA	-9	True	AATAAA	-12	NA	38031847	37887683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909259_37909783_37909940_37911405_37911532_37913053_37913153_37919433_37919511_37921050_37921217_37923207_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
ENSMUSG00000048616.5_0	chr11	-	1900	1	FSM	ENSMUSG00000048616.5	ENSMUST00000061728.5	1695	1	-213	8	-213	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCGACTGGGCTCTACA	NA	False	NA	NA	False	ATTAAA	-11	NA	89193371	89191471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_89191500_89193400
ENSMUSG00000048636.8_6	chr6	+	1604	2	ISM	ENSMUSG00000048636.8	ENSMUST00000133858.2	2079	5	13969	-1	13969	1	3prime_fragment	FALSE	canonical	1	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTAAGAGTCTGAATGAT	2088	False	NA	NA	False	AATAAA	-18	NA	92818581	92824156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_92818970_92822940
ENSMUSG00000048636.8_9	chr6	+	2731	1	NIC	ENSMUSG00000048636.8	novel	2239	5	NA	NA	13059	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTAAACAAATAAATGA	1178	False	NA	NA	False	GATAAA	-29	NA	92817671	92820402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_92817700_92820400
ENSMUSG00000048644.9_0	chr8	-	1148	2	FSM	ENSMUSG00000048644.9	ENSMUST00000053252.9	1212	2	59	5	59	-5	multi-exon	FALSE	canonical	3	15	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGATTGCTGAGTTAAC	NA	False	NA	-21	True	AATAAA	-29	NA	4309215	4307664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_4308648_4309050
ENSMUSG00000048644.9_1	chr8	-	1622	1	Genic_Genomic	ENSMUSG00000048644.9	novel	NA	NA	NA	NA	-8	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGCTGAGTTAACCAGT	NA	False	NA	-17	True	AATAAA	-33	NA	4309282	4307660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_4307700_4309300
ENSMUSG00000048647.10_1	chr2	-	2928	12	ISM	ENSMUSG00000048647.10	ENSMUST00000060009.9	6042	13	659	2579	226	-2573	3prime_fragment	FALSE	canonical	1	4	junction_8	3.37956914462566	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCCCGGCTCTTTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	119377449	119349564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119351207_119354003_119354196_119355052_119355197_119359164_119359246_119359326_119359432_119360569_119360657_119363922_119363982_119369228_119369357_119369603_119369659_119370504_119370574_119371839_119372026_119377269
ENSMUSG00000048655.18_1	chr3	+	2254	8	FSM	ENSMUSG00000048655.18	ENSMUST00000061099.14	887	8	2	-1369	2	-12	multi-exon	FALSE	canonical	1	1	junction_2	1.55182578445717	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTGACATGATAGGGCT	NA	False	NA	NA	False	AATAAA	-5	NA	55047460	55080344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_55047594_55049661_55049742_55058132_55058244_55058325_55058367_55064453_55064553_55065965_55066020_55070741_55070819_55078685
ENSMUSG00000048661.15_0	chr10	-	4740	13	FSM	ENSMUSG00000048661.15	ENSMUST00000119944.8	4743	13	-2	5	-2	-5	multi-exon	FALSE	canonical	3	97	junction_12	16.3112095062125	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGCGTCTTTGTTT	NA	False	NA	-6	True	ATTAAA	-19	NA	120815239	120759322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_120761462_120761671_120761751_120761839_120761946_120763850_120763933_120766946_120767126_120767625_120767729_120767832_120767935_120769299_120769446_120769534_120769615_120783108_120783177_120785201_120785269_120788122_120788161_120813688
ENSMUSG00000048661.15_1	chr10	-	4636	11	NIC	ENSMUSG00000048661.15	novel	4743	13	NA	NA	-3	-5	combination_of_known_splicesites	FALSE	canonical	3	7	junction_10	38.3198382042513	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGCGTCTTTGTTT	NA	False	NA	-6	True	ATTAAA	-19	NA	120815240	120759322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_120761462_120761671_120761751_120761839_120761946_120763850_120763933_120766946_120767126_120767625_120767729_120767832_120767935_120769299_120769446_120769534_120769615_120783108_120783177_120813688
ENSMUSG00000048661.15_3	chr10	-	2896	8	ISM	ENSMUSG00000048661.15	ENSMUST00000119944.8	4743	13	45832	5	45832	-5	3prime_fragment	FALSE	canonical	3	115	junction_3	10.7627475439071	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGCGTCTTTGTTT	NA	False	NA	-6	True	ATTAAA	-19	NA	120769405	120759322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_120761462_120761671_120761751_120761839_120761946_120763850_120763933_120766946_120767126_120767625_120767729_120767832_120767935_120769299
ENSMUSG00000048661.15_4	chr10	-	856	1	ISM	ENSMUSG00000048661.15	ENSMUST00000119944.8	4743	13	55059	5	55059	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGCGTCTTTGTTT	NA	False	NA	-6	True	ATTAAA	-19	NA	120760178	120759322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_120759300_120760200
ENSMUSG00000048661.15_9	chr10	-	4702	12	NIC	ENSMUSG00000048661.15	novel	4743	13	NA	NA	-2	-5	combination_of_known_splicesites	FALSE	canonical	1	3	junction_11	37.9301227901523	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGCGTCTTTGTTT	NA	False	NA	-6	True	ATTAAA	-19	NA	120815239	120759322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_120761462_120761671_120761751_120761839_120761946_120763850_120763933_120766946_120767126_120767625_120767729_120767832_120767935_120769299_120769446_120769534_120769615_120783108_120783177_120785201_120785269_120813688
ENSMUSG00000048668.17_2	chr6	-	1126	3	FSM	ENSMUSG00000048668.17	ENSMUST00000112151.2	1108	3	-15	-3	-15	-2	multi-exon	FALSE	canonical	3	139	junction_2	100.5	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCAGCCTCGTGCCCATC	459	False	NA	-9	True	AATAAA	-39	NA	128339846	128334324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_128335157_128336068_128336318_128339801
ENSMUSG00000048668.17_21	chr6	-	3341	1	Genic_Genomic	ENSMUSG00000048668.17	novel	NA	NA	NA	NA	-4	-300	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	470	False	NA	NA	False	NA	NA	NA	128339835	128336494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_128336500_128339800
ENSMUSG00000048668.17_3	chr6	-	4557	2	FSM	ENSMUSG00000048668.17	ENSMUST00000155573.3	3697	2	-251	-609	-18	-2	multi-exon	FALSE	canonical	3	340	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCAGCCTCGTGCCCATC	512	False	NA	-9	True	AATAAA	-39	NA	128339793	128334324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_128335157_128336068
ENSMUSG00000048668.17_4	chr6	-	1242	4	NIC	ENSMUSG00000048668.17	novel	2015	4	NA	NA	-5	2	combination_of_known_junctions	FALSE	canonical	3	55	junction_2	133.417473451652	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGCAGCCTCGTGCCCAT	469	False	NA	-10	True	AATAAA	-38	NA	128339836	128334325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_128335157_128336068_128336318_128339020_128339148_128339801
ENSMUSG00000048668.17_6	chr6	-	1707	4	FSM	ENSMUSG00000048668.17	ENSMUST00000112152.8	2015	4	-55	363	1	2	multi-exon	FALSE	canonical	3	13	junction_3	145.265274584121	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGCAGCCTCGTGCCCAT	475	False	NA	-10	True	AATAAA	-38	NA	128339830	128334325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_128335157_128336068_128336318_128339020_128339148_128339330
ENSMUSG00000048668.17_7	chr6	-	1891	3	ISM	ENSMUSG00000048668.17	ENSMUST00000112152.8	2015	4	-55	362	1	-2	intron_retention	FALSE	canonical	3	55	junction_2	142.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCAGCCTCGTGCCCATC	475	False	NA	-9	True	AATAAA	-39	NA	128339830	128334324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_128335157_128336068_128336318_128339020
ENSMUSG00000048668.17_9	chr6	-	1557	3	FSM	ENSMUSG00000048668.17	ENSMUST00000057421.15	1584	3	25	2	25	-2	multi-exon	FALSE	canonical	3	41	junction_2	149.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCAGCCTCGTGCCCATC	499	False	NA	-9	True	AATAAA	-39	NA	128339806	128334324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_128335157_128336068_128336318_128339330
ENSMUSG00000048677.10_5	chr7	-	2792	25	FSM	ENSMUSG00000048677.10	ENSMUST00000058022.6	2993	25	65	136	-15	-1	multi-exon	FALSE	canonical	3	14	junction_4	4.91860837364933	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGACCTCTTTCTACTT	NA	False	NA	0	True	TATAAA	-17	NA	144837683	144807795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_144808436_144809187_144809271_144809616_144809699_144810250_144810334_144810466_144810549_144810908_144810983_144811532_144811605_144812251_144812352_144813825_144813876_144814608_144814738_144815669_144815730_144815884_144816005_144820294_144820382_144820514_144820597_144821039_144821141_144821804_144821870_144822596_144822663_144823470_144823571_144826016_144826093_144827598_144827706_144830845_144830963_144832473_144832652_144833013_144833091_144833965_144834031_144837587
ENSMUSG00000048677.10_7	chr7	-	2730	24	NIC	ENSMUSG00000048677.10	novel	2993	25	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	2	2	junction_8	6.01667500134698	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGACCTCTTTCTACTT	NA	False	NA	0	True	TATAAA	-17	NA	144837671	144807795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_144808436_144809187_144809271_144809616_144809699_144810250_144810334_144810466_144810549_144810908_144810983_144811532_144811605_144812251_144812352_144814608_144814738_144815669_144815730_144815884_144816005_144820294_144820382_144820514_144820597_144821039_144821141_144821804_144821870_144822596_144822663_144823470_144823571_144826016_144826093_144827598_144827706_144830845_144830963_144832473_144832652_144833013_144833091_144833965_144834031_144837587
ENSMUSG00000048696.12_0	chr10	-	3275	2	FSM	ENSMUSG00000048696.12	ENSMUST00000105350.3	3266	2	-16	7	-16	-7	multi-exon	FALSE	canonical	3	72	junction_1	0	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTAAGCGCTGGCGTTCG	NA	False	NA	-7	True	AATAAA	-13	NA	80223509	80216195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80218456_80222494
ENSMUSG00000048696.12_1	chr10	-	3098	3	NIC	ENSMUSG00000048696.12	novel	3266	2	NA	NA	-16	-8	combination_of_known_junctions	FALSE	non_canonical	2	28	junction_1	22	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTAAGCGCTGGCGTTC	NA	False	NA	-8	True	AATAAA	-12	NA	80223509	80216196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80216897_80217072_80218456_80222494
ENSMUSG00000048696.12_2	chr10	-	1572	1	ISM	ENSMUSG00000048696.12	ENSMUST00000105350.3	3266	2	5725	8	53	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTAAGCGCTGGCGTTC	NA	False	NA	-8	True	AATAAA	-12	NA	80217768	80216196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80216200_80217800
ENSMUSG00000048701.14_1	chr10	+	5675	9	FSM	ENSMUSG00000048701.14	ENSMUST00000147545.8	5511	9	-172	8	-172	-8	multi-exon	TRUE	canonical	3	18	junction_3	4.1514304763539	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTACTCCTGGAACTG	6797	False	NA	1	True	AATAAA	-12	NA	69932778	70029022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_69933412_69978408_69978559_69990537_69990667_70002831_70002936_70004921_70005083_70010840_70010998_70017989_70018091_70023520_70023646_70024907
ENSMUSG00000048701.14_16	chr10	+	2715	1	ISM	ENSMUSG00000048701.14	ENSMUST00000147545.8	5511	9	93357	8	15431	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTACTCCTGGAACTG	15	False	NA	1	True	AATAAA	-12	NA	70026307	70029022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_70026300_70029000
ENSMUSG00000048706.4_0	chr4	+	1709	2	FSM	ENSMUSG00000048706.4	ENSMUST00000055922.4	3066	2	34	1323	34	-1323	multi-exon	FALSE	canonical	3	28	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCGTGGTTTGTGGTGTT	NA	False	NA	21	True	AATAAA	-23	NA	80828916	80872542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_80829883_80871799
ENSMUSG00000048707.10_0	chr2	+	2767	4	FSM	ENSMUSG00000048707.10	ENSMUST00000114336.4	2787	4	14	6	14	-6	multi-exon	FALSE	canonical	3	142	junction_1	10.4986771653491	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGGCTGCTTTTGCCTT	NA	False	NA	8	True	AATAAA	-10	NA	25152643	25159891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25154566_25158843_25159058_25159144_25159252_25159367
ENSMUSG00000048720.9_0	chr19	+	3884	13	FSM	ENSMUSG00000048720.9	ENSMUST00000037302.6	4209	13	57	268	-41	217	multi-exon	FALSE	canonical	3	18	junction_10	4.85555237731907	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATTATGAGAAAATGAGT	NA	False	NA	NA	False	AATAAA	-11	NA	38825079	38908099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_38825891_38854059_38854184_38871102_38871219_38884430_38884514_38887312_38887431_38889752_38889860_38896215_38896297_38899450_38899540_38901634_38901707_38902372_38902502_38902747_38902858_38905055_38905315_38906314
ENSMUSG00000048720.9_4	chr19	+	3640	11	FSM	ENSMUSG00000048720.9	ENSMUST00000235558.2	3401	11	-24	-215	-24	215	multi-exon	FALSE	canonical	0	0	junction_4	9.34933152690608	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAATTATGAGAAAATGA	NA	False	NA	NA	False	AATAAA	-9	NA	38825096	38908097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_38825891_38854059_38854184_38871102_38871219_38884430_38884514_38896215_38896297_38899450_38899540_38901634_38901707_38902372_38902502_38902747_38902858_38905055_38905315_38906314
ENSMUSG00000048728.16_0	chr11	-	2121	6	FSM	ENSMUSG00000048728.16	ENSMUST00000163301.8	2090	6	-31	0	-2	0	multi-exon	FALSE	canonical	3	11	junction_3	3.42928563989645	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTTGTTTCTTTTTTT	NA	False	NA	-1	True	ATTAAA	-26	NA	50778359	50763546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_50765115_50768869_50768933_50774010_50774104_50774511_50774639_50777195_50777326_50778219
ENSMUSG00000048728.16_3	chr11	-	2099	6	FSM	ENSMUSG00000048728.16	ENSMUST00000050595.13	2059	6	-39	-1	19	1	multi-exon	FALSE	canonical	2	3	junction_5	5.56417109729742	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTTGTTTCTTTTTTTA	NA	False	NA	0	True	ATTAAA	-27	NA	50778309	50763545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_50765115_50768869_50768933_50774010_50774104_50774511_50774639_50777195_50777326_50778192
ENSMUSG00000048731.16_2	chr17	+	394	2	FSM	ENSMUSG00000048731.16	ENSMUST00000142141.3	451	2	57	0	-18	0	multi-exon	FALSE	canonical	3	59	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGTAGCGCCGGTTAATA	NA	False	NA	22	True	AGTAAA	-14	NA	27237017	27241491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27237145_27241224
ENSMUSG00000048731.16_5	chr17	+	1457	6	FSM	ENSMUSG00000048731.16	ENSMUST00000053683.7	1525	6	60	8	60	-7	multi-exon	FALSE	canonical	2	5	junction_1	9.15204895091804	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTCACCTCCTGGGCTGT	NA	False	NA	11	True	AATAAA	-12	NA	27248292	27255344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27248921_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
ENSMUSG00000048731.16_8	chr17	+	982	6	NIC	ENSMUSG00000048731.16	novel	1138	7	NA	NA	5	-7	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	9.84682690007294	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTCACCTCCTGGGCTGT	NA	False	NA	11	True	AATAAA	-12	NA	27236991	27255344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_27237145_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
ENSMUSG00000048732.6_0	chr11	-	3759	2	FSM	ENSMUSG00000048732.6	ENSMUST00000056665.4	2393	2	-8	-1358	-8	1358	multi-exon	FALSE	canonical	3	21	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGGATTTTTTTGTTC	7686	False	NA	NA	False	AATAAA	-12	NA	100363575	100352081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100355272_100363006
ENSMUSG00000048752.8_0	chr9	+	1457	5	FSM	ENSMUSG00000048752.8	ENSMUST00000051097.6	1456	5	-2	1	-2	0	multi-exon	FALSE	canonical	3	8	junction_3	2.54950975679639	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTCCTCCTTTCTGAGC	NA	False	NA	NA	False	ATTAAA	-15	NA	110687032	110693696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110687528_110690327_110690491_110691329_110691614_110692797_110692965_110693348
ENSMUSG00000048755.10_0	chr15	-	1892	4	FSM	ENSMUSG00000048755.10	ENSMUST00000061882.10	1917	4	22	3	22	-3	multi-exon	FALSE	canonical	3	138	junction_2	37.1423687391577	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCTGGCTCTCTCTCTCT	8073	False	NA	-3	True	AATAAA	-20	NA	83439914	83431000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83432144_83433318_83433537_83436734_83436823_83439471
ENSMUSG00000048755.10_4	chr15	-	766	1	ISM	ENSMUSG00000048755.10	ENSMUST00000061882.10	1917	4	8170	3	5322	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCTGGCTCTCTCTCTCT	1100	False	NA	-3	True	AATAAA	-20	NA	83431766	83431000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_83431000_83431800
ENSMUSG00000048756.12_0	chr10	-	3277	1	ISM	ENSMUSG00000048756.12	ENSMUST00000105502.8	6848	4	91630	5	73244	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCATGCCCAGGAGTCTG	7493	False	NA	-7	True	AATAAA	-17	NA	42061118	42057841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_42057800_42061100
ENSMUSG00000048756.12_1	chr10	-	6743	3	ISM	ENSMUSG00000048756.12	ENSMUST00000105502.8	6848	4	1075	10	1019	-10	3prime_fragment	FALSE	canonical	3	128	junction_1	3	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTATCTCATGCCCAGGA	NA	False	NA	-12	True	AATAAA	-12	NA	42151673	42057846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_42062292_42072461_42073898_42150811
ENSMUSG00000048756.12_4	chr10	-	5276	2	ISM	ENSMUSG00000048756.12	ENSMUST00000105502.8	6848	4	79460	6	61074	-6	3prime_fragment	FALSE	canonical	3	128	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTCATGCCCAGGAGTCT	NA	False	NA	-8	True	AATAAA	-16	NA	42073288	42057842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_42062292_42072461
ENSMUSG00000048756.12_5	chr10	-	6780	4	FSM	ENSMUSG00000048756.12	ENSMUST00000105502.8	6848	4	58	10	2	-10	multi-exon	FALSE	canonical	3	109	junction_3	10.6562449087639	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTATCTCATGCCCAGGA	NA	False	NA	-12	True	AATAAA	-12	NA	42152690	42057846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_42062292_42072461_42073898_42150811_42151542_42152521
ENSMUSG00000048758.15_0	chr9	+	752	4	FSM	ENSMUSG00000048758.15	ENSMUST00000150576.8	733	4	-21	2	-21	-1	multi-exon	FALSE	canonical	3	2142	junction_1	1217.38161642108	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTGTGTCTGTTGTCAT	NA	False	NA	1	True	AATAAA	-17	NA	106306631	106308765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_106306776_106307168_106307214_106307506_106307572_106308267
ENSMUSG00000048758.15_1	chr9	+	1012	3	FSM	ENSMUSG00000048758.15	ENSMUST00000213448.2	845	3	12	-179	5	0	multi-exon	FALSE	canonical	3	3966	junction_1	565.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTGTCTGTTGTCATA	NA	False	NA	2	True	AATAAA	-18	NA	106306765	106308766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_106307214_106307506_106307572_106308267
ENSMUSG00000048758.15_2	chr9	+	112	1	ISM	ENSMUSG00000048758.15	ENSMUST00000150576.8	733	4	2001	2	386	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTGTGTCTGTTGTCAT	NA	False	NA	1	True	AATAAA	-17	NA	106308653	106308765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_106308700_106308800
ENSMUSG00000048758.15_3	chr9	+	838	4	FSM	ENSMUSG00000048758.15	ENSMUST00000217081.2	466	4	22	-394	22	-1	multi-exon	FALSE	canonical	3	58	junction_1	2158.78427721613	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTGTGTCTGTTGTCAT	NA	False	NA	1	True	AATAAA	-17	NA	106306782	106308765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_106307013_106307168_106307214_106307506_106307572_106308267
ENSMUSG00000048772.16_0	chr4	+	925	3	FSM	ENSMUSG00000048772.16	ENSMUST00000062824.12	991	3	66	0	-23	0	multi-exon	FALSE	canonical	3	16	junction_1	3.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTATCTATCCTGGGG	NA	False	NA	NA	False	AATAAA	-18	NA	117109213	117125777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_117109332_117123056_117123173_117125086
ENSMUSG00000048787.14_1	chr7	-	3174	1	ISM	ENSMUSG00000048787.14	ENSMUST00000059851.14	5985	3	39407	369	5466	-369	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTGATATTTCTGCAG	3712	False	NA	-10	True	AATAAA	-12	NA	119455561	119452387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_119452400_119455600
ENSMUSG00000048787.14_11	chr7	-	1748	1	ISM	ENSMUSG00000048787.14	ENSMUST00000059851.14	5985	3	38187	3015	4246	2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATATTTATACTCTTGA	2492	False	NA	-12	True	AATAAA	-11	NA	119456781	119455033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_119455000_119456800
ENSMUSG00000048787.14_13	chr7	-	2834	3	FSM	ENSMUSG00000048787.14	ENSMUST00000142120.2	630	3	-5	-2199	-5	12	multi-exon	FALSE	canonical	3	12	junction_2	52.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATACAATGAAAAAGTGTC	NA	False	NA	5	True	AATAAA	-28	NA	119461060	119455016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_119457280_119458602_119459139_119461025
ENSMUSG00000048787.14_2	chr7	-	2954	3	FSM	ENSMUSG00000048787.14	ENSMUST00000059851.14	5985	3	33	2998	33	12	multi-exon	FALSE	canonical	3	85	junction_2	16	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATACAATGAAAAAGTGTC	NA	False	NA	5	True	AATAAA	-28	NA	119494935	119455016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_119457280_119458602_119459139_119494780
ENSMUSG00000048787.14_3	chr7	-	2682	2	ISM	ENSMUSG00000048787.14	ENSMUST00000142120.2	630	3	2027	-2192	1999	5	3prime_fragment	FALSE	canonical	3	117	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACTCTTGATACAATGAAA	245	False	NA	-2	True	AATAAA	-21	NA	119459028	119455023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_119457280_119458602
ENSMUSG00000048787.14_4	chr7	-	2889	3	NNC	ENSMUSG00000048787.14	novel	5985	3	NA	NA	18	5	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	47.5	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACTCTTGATACAATGAAA	NA	False	NA	-2	True	AATAAA	-21	NA	119494950	119455023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_119457280_119458602_119459139_119494853
ENSMUSG00000048787.14_9	chr7	-	3083	3	FSM	ENSMUSG00000048787.14	ENSMUST00000098080.9	3072	3	-11	0	-11	0	multi-exon	FALSE	canonical	3	5	junction_2	56	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATATTTATACTCTT	NA	False	NA	-14	True	AATAAA	-9	NA	119494777	119455035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_119457280_119458602_119459139_119494474
ENSMUSG00000048794.15_4	chr6	-	1540	3	FSM	ENSMUSG00000048794.15	ENSMUST00000135757.3	289	3	-46	-1205	-6	1205	multi-exon	FALSE	canonical	2	2	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGACATAACTTCAGTAT	NA	False	NA	NA	False	NA	NA	NA	90405423	90402260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_90403632_90404419_90404526_90405360
ENSMUSG00000048796.8_0	chr3	-	2706	1	ISM	ENSMUSG00000048796.8	ENSMUST00000106655.2	4275	3	2350	92	2111	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGATGCTATGCTCTG	NA	False	NA	-8	True	ATTAAA	-8	NA	108105800	108103094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_108103100_108105800
ENSMUSG00000048796.8_1	chr3	-	4227	2	FSM	ENSMUSG00000048796.8	ENSMUST00000106654.2	1914	2	181	-2494	181	-8	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGATGCTATGCTCTG	NA	False	NA	-8	True	ATTAAA	-8	NA	108107730	108103094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108107032_108107440
ENSMUSG00000048796.8_2	chr3	-	4182	3	FSM	ENSMUSG00000048796.8	ENSMUST00000106655.2	4275	3	1	92	1	-8	multi-exon	FALSE	canonical	0	0	junction_2	2.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGATGCTATGCTCTG	NA	False	NA	-8	True	ATTAAA	-8	NA	108108149	108103094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108107032_108107440_108107479_108107942
ENSMUSG00000048796.8_3	chr3	-	4045	3	FSM	ENSMUSG00000048796.8	ENSMUST00000065664.7	4058	3	5	8	5	-8	multi-exon	FALSE	canonical	1	2	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGATGCTATGCTCTG	NA	False	NA	-8	True	ATTAAA	-8	NA	108108145	108103094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108107032_108107440_108107479_108108075
ENSMUSG00000048799.9_0	chr18	-	4564	21	FSM	ENSMUSG00000048799.9	ENSMUST00000049811.8	4554	21	-13	3	3	-3	multi-exon	FALSE	canonical	1	72	junction_13	46.6927189184781	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTGTGTGGTCGGTCTC	NA	False	NA	-4	True	AATAAA	-21	NA	53877632	53814797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857425_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
ENSMUSG00000048799.9_2	chr18	-	3270	13	ISM	ENSMUSG00000048799.9	ENSMUST00000049811.8	4554	21	21409	2	21402	-2	3prime_fragment	FALSE	canonical	3	219	junction_10	25.5183757320093	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTGTGTGGTCGGTCTCT	5780	False	NA	-3	True	AATAAA	-22	NA	53856210	53814796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154
ENSMUSG00000048799.9_27	chr18	-	4621	20	ISM	ENSMUSG00000048799.9	ENSMUST00000049811.8	4554	21	70	3	63	-3	3prime_fragment	FALSE	canonical	1	72	junction_13	47.6573062243881	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTGTGTGGTCGGTCTC	NA	False	NA	-4	True	AATAAA	-21	NA	53877549	53814797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857425_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353
ENSMUSG00000048807.3_0	chr11	-	3043	2	FSM	ENSMUSG00000048807.3	ENSMUST00000051207.2	3059	2	16	0	16	0	multi-exon	FALSE	canonical	3	11	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTCTGTCATTCCTTGG	NA	False	NA	NA	False	AATAAA	-16	NA	3864648	3857021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3857985_3862568
ENSMUSG00000048826.8_0	chr17	-	2736	4	FSM	ENSMUSG00000048826.8	ENSMUST00000053218.7	3250	4	335	179	335	-179	multi-exon	FALSE	canonical	3	62	junction_2	0.816496580927726	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCACTGTCTTGTCTCTTC	NA	False	NA	-4	True	AATAAA	-24	NA	14424021	14415492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_14417574_14418078_14418355_14419407_14419541_14423775
ENSMUSG00000048826.8_1	chr17	-	1583	1	ISM	ENSMUSG00000048826.8	ENSMUST00000053218.7	3250	4	7281	179	7281	-179	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCACTGTCTTGTCTCTTC	NA	False	NA	-4	True	AATAAA	-24	NA	14417075	14415492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_14415500_14417100
ENSMUSG00000048826.8_2	chr17	-	2589	4	NIC	ENSMUSG00000048826.8	novel	3250	4	NA	NA	30	-179	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	28.5228952870419	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCACTGTCTTGTCTCTTC	NA	False	NA	-4	True	AATAAA	-24	NA	14424536	14415492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_14417574_14418078_14418355_14419407_14419541_14424437
ENSMUSG00000048826.8_4	chr17	-	2233	2	ISM	ENSMUSG00000048826.8	ENSMUST00000053218.7	3250	4	6126	179	6126	-179	3prime_fragment	FALSE	canonical	3	63	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCACTGTCTTGTCTCTTC	NA	False	NA	-4	True	AATAAA	-24	NA	14418230	14415492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_14417574_14418078
ENSMUSG00000048827.13_0	chr8	+	1240	7	ISM	ENSMUSG00000048827.13	ENSMUST00000212545.2	2450	16	14513	3511	14513	154	internal_fragment	FALSE	canonical	0	0	junction_2	3.13138237134266	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGCGACCTTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	110388629	110397507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_110388877_110391040_110391166_110392179_110392341_110393606_110393818_110394158_110394261_110395847_110395980_110397245
ENSMUSG00000048832.10_0	chr19	+	2500	4	NIC	ENSMUSG00000048832.10	novel	2686	5	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	51.9893151415643	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTCTGTGGTGTCCATG	NA	False	NA	11	True	AATAAA	-14	NA	10666123	10691985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10666344_10683573_10683673_10688634_10688718_10689887
ENSMUSG00000048832.10_1	chr19	+	2587	5	NIC	ENSMUSG00000048832.10	novel	2690	5	NA	NA	-1	2	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	46.3923485070545	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCTGTGGTGTCCATGAT	NA	False	NA	13	True	AATAAA	-16	NA	10666127	10691987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10666261_10683573_10683673_10687633_10687806_10688634_10688718_10689887
ENSMUSG00000048832.10_2	chr19	+	2670	5	FSM	ENSMUSG00000048832.10	ENSMUST00000087951.7	2686	5	14	2	0	-2	multi-exon	FALSE	canonical	3	85	junction_1	17.2699160391705	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGTGGTGTCCATGATG	NA	False	NA	14	True	AATAAA	-17	NA	10666128	10691988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10666344_10683573_10683673_10687633_10687806_10688634_10688718_10689887
ENSMUSG00000048832.10_3	chr19	+	2674	5	FSM	ENSMUSG00000048832.10	ENSMUST00000235927.2	2690	5	13	3	-1	2	multi-exon	FALSE	canonical	3	21	junction_1	43.0145324280062	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCTGTGGTGTCCATGAT	NA	False	NA	13	True	AATAAA	-16	NA	10666127	10691987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_10666348_10683573_10683673_10687633_10687806_10688634_10688718_10689887
ENSMUSG00000048832.10_4	chr19	+	2501	5	NIC	ENSMUSG00000048832.10	novel	2690	5	NA	NA	0	2	combination_of_known_junctions	TRUE	canonical	3	17	junction_1	44.7017896733453	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCTGTGGTGTCCATGAT	NA	False	NA	13	True	AATAAA	-16	NA	10666126	10691987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_10666174_10683573_10683673_10687633_10687806_10688634_10688718_10689887
ENSMUSG00000048832.10_8	chr19	+	2454	4	ISM	ENSMUSG00000048832.10	ENSMUST00000235927.2	2690	5	17457	5	17443	0	3prime_fragment	FALSE	canonical	3	104	junction_2	11.4406682011537	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTCTGTGGTGTCCATG	8483	False	NA	11	True	AATAAA	-14	NA	10683571	10691985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_10683673_10687633_10687806_10688634_10688718_10689887
ENSMUSG00000048833.10_0	chr12	+	5206	7	FSM	ENSMUSG00000048833.10	ENSMUST00000085245.7	5201	7	-13	8	0	-8	multi-exon	FALSE	canonical	3	88	junction_2	10.9455724179028	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCATACCTTATGTGAGT	NA	False	NA	4	True	ATTAAA	-9	NA	80690999	80730103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905_80724041_80726248
ENSMUSG00000048833.10_19	chr12	+	3012	1	ISM	ENSMUSG00000048833.10	ENSMUST00000219706.2	5427	6	36440	8	8778	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCTTATGTGAGTGGCTC	5354	False	NA	9	True	ATTAAA	-14	NA	80727096	80730108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_80727100_80730100
ENSMUSG00000048833.10_2	chr12	+	2445	6	FSM	ENSMUSG00000048833.10	ENSMUST00000217889.2	2155	6	-289	-1	-5	1	multi-exon	FALSE	canonical	3	88	junction_2	11.4647285183732	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTGACTCTTCTGGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	80690994	80725129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905
ENSMUSG00000048833.10_4	chr12	+	4635	7	NIC	ENSMUSG00000048833.10	novel	5201	7	NA	NA	0	-19	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	36.9864840178139	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTTATTAGCGCATAC	NA	False	NA	-7	True	TTTAAA	-32	NA	80690999	80730092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_80691191_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905_80724041_80726248
ENSMUSG00000048834.17_0	chr11	+	1235	4	ISM	ENSMUSG00000048834.17	ENSMUST00000208926.2	1039	5	-358	18874	-19	-18670	5prime_fragment	FALSE	canonical	2	5	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATAAATGCATGTTCATT	NA	False	NA	NA	False	AATAAA	-19	NA	16207704	16213548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_16208087_16209854_16210022_16211437_16211489_16212913
ENSMUSG00000048834.17_3	chr11	+	3060	5	NIC	ENSMUSG00000048834.17	novel	3264	5	NA	NA	4	-338	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	2.69258240356725	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACAAATGTATTTTCTTT	NA	False	NA	NA	False	AATAAA	-25	NA	16207727	16233848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_16208087_16209854_16210022_16211437_16211489_16212913_16213251_16231702
ENSMUSG00000048865.17_0	chr1	+	4453	12	FSM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	31	10	-14	-10	multi-exon	FALSE	canonical	0	0	junction_5	11.0123897167112	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTTAAACAGTGTATGT	2523	False	NA	NA	False	AATAAA	-18	NA	171216552	171237798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171216932_171225042_171225146_171228123_171228269_171229492_171229576_171229724_171229833_171230780_171230909_171231348_171231524_171231601_171231706_171231788_171231867_171232377_171232747_171234925_171235204_171235295
ENSMUSG00000048865.17_10	chr1	+	1919	1	ISM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	19361	7	19316	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAACAGTGTATGTACT	3739	False	NA	NA	False	AATAAA	-21	NA	171235882	171237801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_171235900_171237800
ENSMUSG00000048865.17_11	chr1	+	3131	2	ISM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	18061	3	18016	-3	3prime_fragment	FALSE	canonical	3	23	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTGTATGTACTTTGT	2439	False	NA	NA	False	AATAAA	-25	NA	171234582	171237805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_171235204_171235295
ENSMUSG00000048865.17_3	chr1	+	3942	10	ISM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	11631	10	11586	-10	3prime_fragment	FALSE	canonical	0	0	junction_3	11.119996447286	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTTAAACAGTGTATGT	1867	False	NA	NA	False	AATAAA	-18	NA	171228152	171237798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_171228269_171229492_171229576_171229724_171229833_171230780_171230909_171231348_171231524_171231601_171231706_171231788_171231867_171232377_171232747_171234925_171235204_171235295
ENSMUSG00000048865.17_4	chr1	+	3771	8	ISM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	13175	10	13130	-10	3prime_fragment	FALSE	canonical	0	0	junction_1	11.1794271694365	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTTAAACAGTGTATGT	11	True	NA	NA	False	AATAAA	-18	NA	171229696	171237798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_171229833_171230780_171230909_171231348_171231524_171231601_171231706_171231788_171231867_171232377_171232747_171234925_171235204_171235295
ENSMUSG00000048865.17_6	chr1	+	3639	7	ISM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	14255	10	14210	-10	3prime_fragment	FALSE	canonical	0	0	junction_5	9.51606828241346	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTTAAACAGTGTATGT	900	False	NA	NA	False	AATAAA	-18	NA	171230776	171237798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_171230909_171231348_171231524_171231601_171231706_171231788_171231867_171232377_171232747_171234925_171235204_171235295
ENSMUSG00000048865.17_9	chr1	+	3107	3	ISM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	15906	3	15861	-3	3prime_fragment	FALSE	canonical	0	0	junction_1	11.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTGTATGTACTTTGT	284	False	NA	NA	False	AATAAA	-25	NA	171232427	171237805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_171232747_171234925_171235204_171235295
ENSMUSG00000048874.16_0	chr1	-	4941	13	NIC	ENSMUSG00000048874.16	novel	7567	16	NA	NA	25	441	combination_of_known_junctions	FALSE	canonical	3	18	junction_12	43.8180423265729	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTGTGTGTGATTTG	NA	False	NA	-3	True	GATAAA	-14	NA	30912950	30842185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_30845024_30845249_30845446_30847803_30847894_30849763_30849912_30850852_30851049_30852097_30852234_30853040_30853173_30855548_30855666_30859161_30859319_30859763_30859909_30860211_30860396_30863290_30863601_30912658
ENSMUSG00000048874.16_1	chr1	-	7103	16	FSM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	-302	766	11	441	multi-exon	FALSE	canonical	3	122	junction_14	21.375375240371	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTGTGTGTGATTTG	NA	False	NA	-3	True	GATAAA	-14	NA	30912964	30842185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_30845024_30845249_30845446_30847803_30847894_30849763_30849912_30850852_30851049_30852097_30852234_30853040_30853173_30855548_30855666_30859161_30859319_30859763_30859909_30860211_30860396_30863290_30863601_30868923_30870641_30876185_30876348_30902067_30902337_30912658
ENSMUSG00000048874.16_2	chr1	-	5541	13	ISM	ENSMUSG00000048874.16	ENSMUST00000088310.10	7561	15	32522	763	9	441	3prime_fragment	FALSE	canonical	3	124	junction_8	16.9187190873173	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTGTGTGTGATTTG	6102	False	NA	-3	True	GATAAA	-14	NA	30869815	30842185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_30845024_30845249_30845446_30847803_30847894_30849763_30849912_30850852_30851049_30852097_30852234_30853040_30853173_30855548_30855666_30859161_30859319_30859763_30859909_30860211_30860396_30863290_30863601_30868923
ENSMUSG00000048874.16_20	chr1	-	6666	14	NIC	ENSMUSG00000048874.16	novel	7567	16	NA	NA	18	442	combination_of_known_splicesites	FALSE	canonical	3	14	junction_13	43.1286777009994	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGTGTGTGTGATTTGA	NA	False	NA	-2	True	GATAAA	-15	NA	30912957	30842184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_30845024_30845249_30845446_30847803_30847894_30849763_30849912_30850852_30851049_30852097_30852234_30853040_30853173_30855548_30855666_30859161_30859319_30859763_30859909_30860211_30860396_30863290_30863601_30868923_30870641_30912658
ENSMUSG00000048874.16_24	chr1	-	5214	14	NIC	ENSMUSG00000048874.16	novel	7567	16	NA	NA	18	438	combination_of_known_junctions	FALSE	canonical	1	7	junction_12	45.2966553097303	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACTTTGTGTGTGTGAT	NA	False	NA	-6	True	GATAAA	-11	NA	30912957	30842188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_30845024_30845249_30845446_30847803_30847894_30849763_30849912_30850852_30851049_30852097_30852234_30853040_30853173_30855548_30855666_30859161_30859319_30859763_30859909_30860211_30860396_30863290_30863601_30902067_30902337_30912658
ENSMUSG00000048874.16_3	chr1	-	1958	1	ISM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	68519	766	4043	441	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTGTGTGTGATTTG	NA	False	NA	-3	True	GATAAA	-14	NA	30844143	30842185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_30842200_30844100
ENSMUSG00000048874.16_30	chr1	-	6824	15	NIC	ENSMUSG00000048874.16	novel	7567	16	NA	NA	18	438	combination_of_known_splicesites	FALSE	canonical	3	25	junction_14	39.454766143377	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACTTTGTGTGTGTGAT	NA	False	NA	-6	True	GATAAA	-11	NA	30912957	30842188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_30845024_30845249_30845446_30847803_30847894_30849763_30849912_30850852_30851049_30852097_30852234_30853040_30853173_30855548_30855666_30859161_30859319_30859763_30859909_30860211_30860396_30863290_30863601_30868923_30870641_30876185_30876348_30912658
ENSMUSG00000048874.16_5	chr1	-	4561	12	ISM	ENSMUSG00000048874.16	ENSMUST00000088310.10	7561	15	38825	763	-588	441	3prime_fragment	FALSE	canonical	3	124	junction_8	16.7460369062688	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTGTGTGTGATTTG	NA	False	NA	-3	True	GATAAA	-14	NA	30863512	30842185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_30845024_30845249_30845446_30847803_30847894_30849763_30849912_30850852_30851049_30852097_30852234_30853040_30853173_30855548_30855666_30859161_30859319_30859763_30859909_30860211_30860396_30863290
ENSMUSG00000048874.16_59	chr1	-	2860	4	ISM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	-295	27091	18	1	5prime_fragment	FALSE	canonical	3	122	junction_2	3.09120616516523	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGAATGGCTATTTTTCT	NA	False	NA	-11	True	AATAAA	-14	NA	30912957	30868510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_30870641_30876185_30876348_30902067_30902337_30912658
ENSMUSG00000048874.16_8	chr1	-	6926	15	NIC	ENSMUSG00000048874.16	novel	7567	16	NA	NA	26	441	combination_of_known_junctions	FALSE	canonical	3	35	junction_13	37.2287468475201	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTGTGTGTGATTTG	NA	False	NA	-3	True	GATAAA	-14	NA	30912949	30842185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_30845024_30845249_30845446_30847803_30847894_30849763_30849912_30850852_30851049_30852097_30852234_30853040_30853173_30855548_30855666_30859161_30859319_30859763_30859909_30860211_30860396_30863290_30863601_30868923_30870641_30902067_30902337_30912658
ENSMUSG00000048878.7_0	chr11	+	1542	1	FSM	ENSMUSG00000048878.7	ENSMUST00000053063.7	3495	1	602	1351	602	-1351	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAGTTTCAGTGTGATTT	NA	False	NA	7	True	AATAAA	-18	NA	103007658	103009200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_103007700_103009200
ENSMUSG00000048895.14_0	chr11	+	4130	1	FSM	ENSMUSG00000048895.14	ENSMUST00000053413.12	4162	1	25	7	-8	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGTCACATCCTGTTTGTG	NA	False	NA	20	True	AATAAA	-13	NA	80367873	80372003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_80367900_80372000
ENSMUSG00000048897.16_0	chr7	+	4423	5	FSM	ENSMUSG00000048897.16	ENSMUST00000164056.9	5871	5	19	1429	-1	-5	multi-exon	FALSE	canonical	3	72	junction_4	112.192635676322	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGAGGTGACTGTACGTGC	NA	False	NA	13	True	AATAAA	-13	NA	79674580	79742492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181_79736357_79740082
ENSMUSG00000048897.16_1	chr7	+	2258	4	ISM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	-4	4980	-4	4	5prime_fragment	TRUE	canonical	3	198	junction_1	67.6214955961983	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGTTGAGTGCTGTGTAA	NA	False	NA	5	True	AATAAA	-13	NA	79674577	79736598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181
ENSMUSG00000048897.16_16	chr7	+	3820	4	ISM	ENSMUSG00000048897.16	ENSMUST00000049680.10	4721	5	55461	5	53684	-5	3prime_fragment	FALSE	canonical	3	72	junction_3	126.809568513842	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGAGGTGACTGTACGTGC	NA	False	NA	13	True	AATAAA	-13	NA	79731245	79742492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79732289_79735698_79735891_79736181_79736357_79740082
ENSMUSG00000048897.16_2	chr7	+	4521	6	FSM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	-1	-914	-1	-5	multi-exon	FALSE	canonical	2	5	junction_5	149.360503480673	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGAGGTGACTGTACGTGC	NA	False	NA	13	True	AATAAA	-13	NA	79674580	79742492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181_79736357_79738282_79738381_79740082
ENSMUSG00000048897.16_21	chr7	+	1417	1	ISM	ENSMUSG00000048897.16	ENSMUST00000164056.9	5871	5	66514	1429	63514	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGAGGTGACTGTACGTGC	NA	False	NA	13	True	AATAAA	-13	NA	79741075	79742492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_79741100_79742500
ENSMUSG00000048897.16_6	chr7	+	2265	4	FSM	ENSMUSG00000048897.16	ENSMUST00000206039.2	2194	4	-67	-4	-67	4	multi-exon	FALSE	canonical	3	96	junction_1	115.519118186847	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGTTGAGTGCTGTGTAA	NA	False	NA	5	True	AATAAA	-13	NA	79676067	79736598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79676232_79730796_79732289_79735698_79735891_79736181
ENSMUSG00000048897.16_7	chr7	+	4399	5	FSM	ENSMUSG00000048897.16	ENSMUST00000049680.10	4721	5	317	5	-33	-5	multi-exon	FALSE	canonical	3	72	junction_4	128.705817661829	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGAGGTGACTGTACGTGC	NA	False	NA	13	True	AATAAA	-13	NA	79676101	79742492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79676232_79730796_79732289_79735698_79735891_79736181_79736357_79740082
ENSMUSG00000048899.9_0	chr4	-	4078	5	FSM	ENSMUSG00000048899.9	ENSMUST00000049994.8	4097	5	14	5	14	-5	multi-exon	TRUE	canonical	3	32	junction_2	4.35889894354067	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACGTCTTCCTATGTCT	9987	False	NA	-9	True	AATATA	-19	NA	119349811	119322484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119325723_119327663_119327868_119331715_119331803_119334987_119335219_119349493
ENSMUSG00000048899.9_3	chr4	-	2127	1	ISM	ENSMUSG00000048899.9	ENSMUST00000049994.8	4097	5	25214	5	25095	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACGTCTTCCTATGTCT	9014	False	NA	-9	True	AATATA	-19	NA	119324611	119322484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_119322500_119324600
ENSMUSG00000048899.9_4	chr4	-	4078	5	NNC	ENSMUSG00000048899.9	novel	4097	5	NA	NA	13	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	17.9722007556114	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACGTCTTCCTATGTCT	9986	False	NA	-9	True	AATATA	-19	NA	119349812	119322484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_119325723_119327663_119327867_119331715_119331803_119334987_119335219_119349493
ENSMUSG00000048905.6_0	chr17	-	3865	10	NIC	ENSMUSG00000048905.6	novel	4597	12	NA	NA	-2648	-7	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	3.26976421545826	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCAAAGTGTGAACCGGAT	NA	False	NA	-11	True	AATAAA	-8	NA	29127322	29115372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_29117898_29118456_29118721_29120104_29120170_29120923_29121050_29121746_29121997_29122220_29122283_29123489_29123625_29124228_29124470_29124613_29124730_29127241
ENSMUSG00000048905.6_1	chr17	-	2734	2	ISM	ENSMUSG00000048905.6	ENSMUST00000062357.6	4597	12	15635	5	6011	-5	3prime_fragment	FALSE	canonical	3	14	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGTGTGAACCGGATCT	NA	False	NA	-9	True	AATAAA	-10	NA	29118663	29115370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_29117898_29118456
ENSMUSG00000048905.6_5	chr17	-	4280	11	ISM	ENSMUSG00000048905.6	ENSMUST00000062357.6	4597	12	5610	3	-4014	-3	3prime_fragment	FALSE	canonical	1	1	junction_8	3.37638860322683	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGTGAACCGGATCTTT	NA	False	NA	-7	True	AATAAA	-12	NA	29128688	29115368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_29117898_29118456_29118721_29120104_29120170_29120923_29121050_29121746_29121997_29122220_29122283_29123489_29123625_29124228_29124470_29124664_29124730_29127241_29127362_29128265
ENSMUSG00000048905.6_8	chr17	-	4318	11	NIC	ENSMUSG00000048905.6	novel	4597	12	NA	NA	-4003	-5	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	3.26955654485436	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGTGTGAACCGGATCT	NA	False	NA	-9	True	AATAAA	-10	NA	29128677	29115370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_29117898_29118456_29118721_29120104_29120170_29120923_29121050_29121746_29121997_29122220_29122283_29123489_29123625_29124228_29124470_29124613_29124730_29127241_29127362_29128265
ENSMUSG00000048911.16_0	chr2	-	3158	1	ISM	ENSMUSG00000048911.16	ENSMUST00000059372.11	5978	6	51231	429	11664	-426	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTTTGTATTTGGACC	4903	False	NA	NA	False	AATAAA	-13	NA	131143570	131140412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_131140400_131143600
ENSMUSG00000048911.16_1	chr2	-	5538	6	FSM	ENSMUSG00000048911.16	ENSMUST00000059372.11	5978	6	11	429	-8	-426	multi-exon	FALSE	canonical	3	12	junction_3	4.63033476111609	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTTTGTATTTGGACC	NA	False	NA	NA	False	AATAAA	-13	NA	131194790	131140412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_131145501_131146171_131146252_131147571_131147614_131150394_131150438_131155082_131155233_131194655
ENSMUSG00000048911.16_5	chr2	-	3848	5	NIC	ENSMUSG00000048911.16	novel	5978	6	NA	NA	-7	-2072	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	8.73212459828649	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAGCCTCCACATTGAATC	NA	False	NA	NA	False	NA	NA	NA	131194789	131142058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_131145501_131146171_131146252_131147571_131147614_131155082_131155233_131194655
ENSMUSG00000048911.16_6	chr2	-	5332	5	NIC	ENSMUSG00000048911.16	novel	5978	6	NA	NA	52	-422	intron_retention	FALSE	canonical	0	0	junction_4	8.87059749960509	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGTATTTGGACCTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	131194730	131140408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_131145501_131146171_131146252_131147571_131147614_131150394_131150438_131194655
ENSMUSG00000048916.8_0	chr3	+	2960	1	FSM	ENSMUSG00000048916.8	ENSMUST00000131852.2	1848	1	-18	-1094	-18	1094	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCCGTGGGGAAAAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	65300739	65303699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_65300700_65303700
ENSMUSG00000048916.8_1	chr3	+	2929	2	Genic_Genomic	ENSMUSG00000048916.8	novel	1848	1	NA	NA	-21	1102	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGGGAAAAAAAAAAAACTCT	NA	False	NA	NA	False	AATAAA	-16	NA	65300736	65303707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_+_65302585_65302626
ENSMUSG00000048920.9_0	chr7	-	2759	2	ISM	ENSMUSG00000048920.9	ENSMUST00000061390.9	2827	3	1608	33	397	-33	3prime_fragment	FALSE	canonical	3	33	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAAATAGAGCCGTTTG	NA	False	NA	NA	False	TTTAAA	-13	NA	16549049	16543203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_16545902_16548988
ENSMUSG00000048920.9_1	chr7	-	2791	3	FSM	ENSMUSG00000048920.9	ENSMUST00000061390.9	2827	3	3	33	3	-33	multi-exon	FALSE	canonical	3	12	junction_2	10.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAAATAGAGCCGTTTG	NA	False	NA	NA	False	TTTAAA	-13	NA	16550654	16543203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_16545902_16548988_16549052_16550624
ENSMUSG00000048920.9_2	chr7	-	2792	3	NIC	ENSMUSG00000048920.9	novel	2827	3	NA	NA	-1	-33	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	12.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAAATAGAGCCGTTTG	NA	False	NA	NA	False	TTTAAA	-13	NA	16550658	16543203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_16545902_16548988_16549049_16550624
ENSMUSG00000048920.9_3	chr7	-	1185	1	ISM	ENSMUSG00000048920.9	ENSMUST00000061390.9	2827	3	6274	28	5063	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGAGCCGTTTGTTTCC	NA	False	NA	NA	False	TTTAAA	-18	NA	16544383	16543198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_16543200_16544400
ENSMUSG00000048921.12_0	chr7	-	1982	3	FSM	ENSMUSG00000048921.12	ENSMUST00000053392.11	3621	3	21	1618	21	1	multi-exon	FALSE	canonical	3	47	junction_1	4.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTGTCTTAAAATAATAT	4378	False	NA	-2	True	ATTAAA	-13	NA	127048309	127042925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127044310_127047534_127047649_127047825
ENSMUSG00000048921.12_1	chr7	-	2446	1	ISM	ENSMUSG00000048921.12	ENSMUST00000053392.11	3621	3	4574	3	4409	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAATTCTGCTCCTTCTG	8931	False	NA	NA	False	ATTAAA	-11	NA	127043756	127041310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_127041300_127043800
ENSMUSG00000048922.19_1	chr14	-	3242	15	FSM	ENSMUSG00000048922.19	ENSMUST00000163100.8	3841	15	236	363	1	-363	multi-exon	FALSE	canonical	0	0	junction_2	110.056131318597	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAGAAATACATTAATTT	NA	False	NA	-15	True	AATAAA	-25	NA	67952823	67914166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
ENSMUSG00000048922.19_13	chr14	-	3219	15	NIC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	-14	-368	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	137.085274369567	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTAAGTAGAAATACATT	NA	False	NA	-20	True	AATAAA	-20	NA	67953073	67914171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_67915472_67917610_67917780_67931074_67931201_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
ENSMUSG00000048922.19_6	chr14	-	3228	15	NIC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	-15	-363	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	124.651514230674	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAGAAATACATTAATTT	NA	False	NA	-15	True	AATAAA	-25	NA	67953074	67914166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
ENSMUSG00000048922.19_9	chr14	-	3239	15	NIC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	1	-363	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	125.363145969407	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAGAAATACATTAATTT	NA	False	NA	-15	True	AATAAA	-25	NA	67952823	67914166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_67915472_67917610_67917780_67931074_67931201_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
ENSMUSG00000048924.15_1	chr13	+	2441	12	FSM	ENSMUSG00000048924.15	ENSMUST00000057325.15	2413	12	-29	1	27	-1	multi-exon	FALSE	canonical	1	1	junction_1	5.01073228346206	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACAGTTTCAATGTCTCT	NA	False	NA	4	True	TATAAA	-17	NA	100806251	100833747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_100806360_100814411_100814711_100815824_100815884_100818288_100818376_100819274_100819353_100820793_100820880_100823616_100823700_100826826_100826928_100828802_100828911_100830044_100830217_100830877_100831009_100832618
ENSMUSG00000048930.13_0	chr6	-	1724	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	-4	-12	combination_of_known_splicesites	FALSE	canonical	3	29	junction_9	124.029068675626	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAAAAGTTATAAA	NA	False	NA	6	True	AATAAA	-24	NA	113354482	113343627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354450
ENSMUSG00000048930.13_1	chr6	-	1712	9	FSM	ENSMUSG00000048930.13	ENSMUST00000032410.14	2848	9	494	642	-13	-12	multi-exon	FALSE	canonical	3	225	junction_8	58.2875415504892	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAAAAGTTATAAA	NA	False	NA	6	True	AATAAA	-24	NA	113354350	113343627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113354276
ENSMUSG00000048930.13_5	chr6	-	1807	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	-54	-12	combination_of_known_junctions	FALSE	canonical	3	134	junction_9	97.0713114476818	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAAAAGTTATAAA	NA	False	NA	6	True	AATAAA	-24	NA	113354391	113343627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
ENSMUSG00000048930.13_8	chr6	-	2168	9	NIC	ENSMUSG00000048930.13	novel	2848	9	NA	NA	-45	-12	intron_retention	FALSE	canonical	3	198	junction_8	66.8663545813588	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAAAAGTTATAAA	NA	False	NA	6	True	AATAAA	-24	NA	113354382	113343627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852
ENSMUSG00000048949.9_0	chrX	-	1217	1	Genic_Genomic	ENSMUSG00000048949.9	novel	NA	NA	NA	NA	1326	245	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAATAATAAACAAC	NA	False	NA	NA	False	NA	NA	NA	102207687	102206470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_102206500_102207700
ENSMUSG00000048960.14_0	chr1	+	6123	40	FSM	ENSMUSG00000048960.14	ENSMUST00000027056.12	11053	40	42	4888	-11	589	multi-exon	TRUE	canonical	1	6	junction_1	5.99769844088307	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAATAATTAAAACAGCAT	NA	False	NA	NA	False	CATAAA	-33	NA	11063730	11369017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_11064134_11131549_11131622_11136017_11136141_11138234_11138340_11150246_11150349_11159940_11160103_11168686_11168821_11171287_11171392_11177826_11177977_11180505_11180651_11182966_11183068_11193344_11193449_11194037_11194088_11202561_11202638_11206988_11207062_11210179_11210323_11210459_11210553_11212872_11213022_11220033_11220120_11223766_11223904_11226464_11226583_11230319_11230505_11232463_11232626_11240076_11240300_11240807_11241016_11252078_11252259_11254669_11254765_11255353_11255437_11256110_11256202_11256860_11256990_11263736_11263779_11270058_11270277_11274289_11274393_11278735_11278880_11301905_11302021_11335902_11335970_11336192_11336384_11355280_11355384_11359476_11359545_11367931
ENSMUSG00000048960.14_1	chr1	+	3138	1	FSM	ENSMUSG00000048960.14	ENSMUST00000190935.2	3084	1	-54	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-12	NA	11063687	11066825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_11063700_11066800
ENSMUSG00000048960.14_13	chr1	+	4507	1	ISM	ENSMUSG00000048960.14	ENSMUST00000027056.12	11053	40	305708	2	15180	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCTTAAGTTTGACTAAT	NA	False	NA	NA	False	AATAAA	-14	NA	11369396	11373903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_11369400_11373900
ENSMUSG00000048960.14_3	chr1	+	5750	39	ISM	ENSMUSG00000048960.14	ENSMUST00000027056.12	11053	40	67857	4862	-37208	615	3prime_fragment	FALSE	canonical	2	17	junction_16	5.02679799285209	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATGATAGTTGTGCTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	11131545	11369043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_11131622_11136017_11136141_11138234_11138340_11150246_11150349_11159940_11160103_11168686_11168821_11171287_11171392_11177826_11177977_11180505_11180651_11182966_11183068_11193344_11193449_11194037_11194088_11202561_11202638_11206988_11207062_11210179_11210323_11210459_11210553_11212872_11213022_11220033_11220120_11223766_11223904_11226464_11226583_11230319_11230505_11232463_11232626_11240076_11240300_11240807_11241016_11252078_11252259_11254669_11254765_11255353_11255437_11256110_11256202_11256860_11256990_11263736_11263779_11270058_11270277_11274289_11274393_11278735_11278880_11301905_11302021_11335902_11335970_11336192_11336384_11355280_11355384_11359476_11359545_11367931
ENSMUSG00000048967.17_2	chr8	-	977	8	Fusion	ENSMUSG00000036199.10_ENSMUSG00000048967.17	novel	785	6	NA	NA	911	0	multi-exon	FALSE	canonical	2	10	junction_1	2773.96888730842	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGCCTCTTTTGTGTA	NA	False	NA	0	True	AATAAA	-16	NA	70354297	70340437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr8_-_70340673_70341636_70341788_70341858_70341973_70342092_70342204_70343515_70343625_70347153_70347226_70347891_70347971_70354191
ENSMUSG00000048967.17_5	chr8	-	359	2	ISM	ENSMUSG00000048967.17	ENSMUST00000152938.9	785	6	4865	0	-925	0	3prime_fragment	TRUE	canonical	2	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGCCTCTTTTGTGTA	NA	False	NA	0	True	AATAAA	-16	NA	70341760	70340437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_70340673_70341636
ENSMUSG00000048970.10_0	chrX	-	1436	2	FSM	ENSMUSG00000048970.10	ENSMUST00000058265.8	1449	2	5	8	5	-8	multi-exon	FALSE	canonical	3	94	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCCTGTGTTTCTATTAC	NA	False	NA	-10	True	ATTAAA	-10	NA	37723959	37719669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_37721001_37723854
ENSMUSG00000048978.15_0	chr13	-	2096	4	FSM	ENSMUSG00000048978.15	ENSMUST00000057866.13	2222	4	127	-1	15	1	multi-exon	FALSE	canonical	2	3	junction_1	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTGGTGTTTATTT	NA	False	NA	0	True	AATAAA	-18	NA	25453938	25436021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_25437735_25446182_25446383_25452004_25452074_25453824
ENSMUSG00000048988.9_0	chr5	+	4187	2	FSM	ENSMUSG00000048988.9	ENSMUST00000198608.2	413	2	-113	-3661	-113	-11	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATCCAAATACATG	NA	False	NA	NA	False	AAAAAG	-31	NA	139894115	139960466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_139894569_139956732
ENSMUSG00000048997.18_0	chr3	-	2421	11	FSM	ENSMUSG00000048997.18	ENSMUST00000117784.8	2387	11	-32	-2	-8	2	multi-exon	FALSE	canonical	3	27	junction_7	7.33212111192934	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGACTGTCTCCCTGTTC	3374	False	NA	NA	False	AAGAAA	-24	NA	108117810	108109541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114426_108114709_108114921_108115278_108115384_108115755_108115822_108117660
ENSMUSG00000048997.18_1	chr3	-	2585	12	FSM	ENSMUSG00000048997.18	ENSMUST00000102633.9	3044	12	457	2	9	-2	multi-exon	FALSE	canonical	3	3	junction_11	14.3354153142281	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGACTGTCTCCCTGTTCTG	3391	False	NA	NA	False	AAGAAA	-26	NA	108117793	108109539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114426_108114709_108114921_108115278_108115384_108115755_108115822_108116232_108116412_108117660
ENSMUSG00000048997.18_6	chr3	-	2285	11	FSM	ENSMUSG00000048997.18	ENSMUST00000117409.8	2321	11	3	33	3	-15	multi-exon	FALSE	canonical	2	3	junction_7	12.8124939024376	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAAAAAACTCTT	3385	False	NA	NA	False	NA	NA	NA	108117799	108109570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114330_108114709_108114921_108115278_108115384_108115755_108115822_108117660
ENSMUSG00000048997.18_7	chr3	-	3899	11	ISM	ENSMUSG00000048997.18	ENSMUST00000102633.9	3044	12	467	-73	-1	73	intron_retention	FALSE	canonical	3	11	junction_10	10.8558739860041	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAAATGAGTGAGTGTCC	3401	False	NA	NA	False	TATAAA	-35	NA	108117783	108109464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114426_108114709_108114921_108115278_108115384_108115755_108115822_108116232
ENSMUSG00000049001.6_0	chr6	+	2769	4	FSM	ENSMUSG00000049001.6	ENSMUST00000054351.6	10101	4	2	7330	2	1556	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTATCTCATGTAAAAAGT	NA	False	NA	NA	False	AGTAAA	-20	NA	65648575	65681980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_65649086_65673022_65673212_65678426_65678552_65680035
ENSMUSG00000049036.8_0	chr12	+	1594	2	FSM	ENSMUSG00000049036.8	ENSMUST00000058491.8	1574	2	-27	7	-27	-7	multi-exon	FALSE	canonical	3	28	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAAAGCCTGGCTATTAT	825	False	NA	12	True	TTTAAA	-22	NA	113149522	113153136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_113149579_113151598
ENSMUSG00000049037.9_0	chr6	+	3971	6	FSM	ENSMUSG00000049037.9	ENSMUST00000060484.9	1558	6	-2426	13	-2426	-13	multi-exon	FALSE	canonical	2	8	junction_2	6.56048778674269	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGATCTGATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	122896380	122911565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_122899039_122901675_122901790_122904922_122905025_122907635_122907788_122909107_122909224_122910736
ENSMUSG00000049037.9_4	chr6	+	1582	7	NNC	ENSMUSG00000049037.9	novel	1558	6	NA	NA	-682	-13	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	7.84573486395988	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGATCTGATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	122898124	122911565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_122898238_122898882_122899039_122901675_122901790_122904922_122905025_122907635_122907788_122909107_122909224_122910736
ENSMUSG00000049038.4_0	chr10	-	1534	3	FSM	ENSMUSG00000049038.4	ENSMUST00000050813.4	1567	3	23	10	-9	-10	multi-exon	FALSE	canonical	3	41	junction_2	4.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTGGAACTATTATTCC	NA	False	NA	-8	True	AATAAA	-13	NA	84963868	84955306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_84956679_84962231_84962351_84963825
ENSMUSG00000049038.4_2	chr10	-	721	1	ISM	ENSMUSG00000049038.4	ENSMUST00000050813.4	1567	3	7864	10	6414	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTGGAACTATTATTCC	NA	False	NA	-8	True	AATAAA	-13	NA	84956027	84955306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_84955300_84956000
ENSMUSG00000049038.4_3	chr10	-	2977	2	FSM	ENSMUSG00000049038.4	ENSMUST00000214607.2	477	2	-1395	-1105	23	-10	multi-exon	FALSE	canonical	3	50	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTGGAACTATTATTCC	NA	False	NA	-8	True	AATAAA	-13	NA	84963836	84955306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_84956679_84962231
ENSMUSG00000049047.12_0	chrX	+	3350	5	FSM	ENSMUSG00000049047.12	ENSMUST00000081834.10	3327	5	0	-23	0	-7	multi-exon	FALSE	canonical	2	7	junction_1	4.81534007106456	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTGATTACTGTGTAG	NA	False	NA	NA	False	NA	NA	NA	133657343	133662197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_133657480_133658012_133658092_133658480_133658543_133658825_133658896_133659194
ENSMUSG00000049076.13_1	chr16	-	2586	1	ISM	ENSMUSG00000049076.13	ENSMUST00000230698.2	6515	23	106245	3	1732	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGCTGTAAGTGCTCC	NA	False	NA	-23	True	AATAAA	-18	NA	30913818	30911232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_30911200_30913800
ENSMUSG00000049076.13_11	chr16	-	6469	23	NNC	ENSMUSG00000049076.13	novel	3414	23	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	34.1688805303044	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGCTGTAAGTGCTCC	NA	False	NA	-23	True	AATAAA	-18	NA	31020035	30911232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_30915265_30920642_30920705_30922316_30922428_30923662_30923772_30924302_30924491_30925867_30925961_30926844_30927006_30928458_30928551_30929318_30929389_30929710_30929920_30934819_30934926_30936075_30936177_30938213_30938266_30946138_30946252_30950077_30950153_30952346_30952443_30955354_30955400_30958288_30958473_30960556_30960616_30972523_30972578_30973390_30973511_30979148_30979207_31019756
ENSMUSG00000049076.13_4	chr16	-	6464	23	FSM	ENSMUSG00000049076.13	ENSMUST00000230614.2	3414	23	-49	-3001	34	0	multi-exon	FALSE	canonical	3	119	junction_10	14.8474334816404	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGCTGTAAGTGCTCC	NA	False	NA	-23	True	AATAAA	-18	NA	31020029	30911232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_30915265_30920642_30920705_30922316_30922428_30923662_30923773_30924302_30924491_30925867_30925961_30926844_30927006_30928458_30928551_30929318_30929389_30929710_30929920_30934819_30934926_30936075_30936177_30938213_30938266_30946138_30946252_30950077_30950153_30952346_30952443_30955354_30955400_30958288_30958473_30960556_30960616_30972523_30972578_30973390_30973511_30979148_30979207_31019756
ENSMUSG00000049076.13_7	chr16	-	6470	24	FSM	ENSMUSG00000049076.13	ENSMUST00000231125.2	2334	24	-206	-3930	-34	-1	multi-exon	FALSE	canonical	3	15	junction_14	39.6330522162666	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTTGCTGTAAGTGCTC	NA	False	NA	-24	True	AATAAA	-17	NA	31020015	30911233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_30915265_30920642_30920705_30922316_30922428_30923662_30923773_30924302_30924491_30925867_30925961_30926844_30927006_30928458_30928551_30929318_30929389_30929710_30929920_30934819_30934926_30936075_30936177_30938213_30938266_30941438_30941460_30946138_30946252_30950077_30950153_30952346_30952443_30955354_30955400_30958288_30958473_30960556_30960616_30972523_30972578_30973390_30973511_30979148_30979207_31019756
ENSMUSG00000049086.9_0	chr2	+	832	1	FSM	ENSMUSG00000049086.9	ENSMUST00000061483.9	983	1	100	51	100	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACAAGATTTTAGGATATG	NA	False	NA	14	True	AATAAA	-16	NA	25596850	25597682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25596800_25597700
ENSMUSG00000049090.4_0	chr18	+	3355	2	FSM	ENSMUSG00000049090.4	ENSMUST00000060223.4	3430	2	48	27	48	-27	multi-exon	FALSE	canonical	3	35	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAACATTAAAAAAA	4302	False	NA	NA	False	AGTAAA	-19	NA	84106235	84115626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_84106499_84112534
ENSMUSG00000049090.4_1	chr18	+	3781	2	FSM	ENSMUSG00000049090.4	ENSMUST00000235383.2	1789	2	-579	-1413	29	-27	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAACATTAAAAAAA	4283	False	NA	NA	False	AGTAAA	-19	NA	84106216	84115626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_84106906_84112534
ENSMUSG00000049090.4_2	chr18	+	1614	1	ISM	ENSMUSG00000049090.4	ENSMUST00000060223.4	3430	2	7521	331	6913	-331	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAATTTAACATAGTATA	NA	False	NA	NA	False	AATAAA	-22	NA	84113708	84115322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_84113700_84115300
ENSMUSG00000049091.8_0	chr7	-	2175	1	FSM	ENSMUSG00000049091.8	ENSMUST00000082428.6	2177	1	-2	4	-2	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2503	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTGTGGCTAATGTTT	2839	False	NA	-12	True	AATAAA	-42	NA	126873229	126871054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126871100_126873200
ENSMUSG00000049092.12_0	chr14	+	3226	1	FSM	ENSMUSG00000049092.12	ENSMUST00000227086.2	4997	1	-3	1774	-3	-548	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGCCAAAAAAAAAAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	45457170	45460396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_45457200_45460400
ENSMUSG00000049092.12_1	chr14	+	1830	2	FSM	ENSMUSG00000049092.12	ENSMUST00000227056.2	509	2	-296	-1025	2	540	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGTAACAAAACCAAACTTT	NA	False	NA	NA	False	AATAAA	-12	NA	45457177	45459154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_45457876_45458022
ENSMUSG00000049092.12_2	chr14	+	4218	7	FSM	ENSMUSG00000049092.12	ENSMUST00000146150.3	3917	7	-303	2	-27	-2	multi-exon	FALSE	canonical	0	0	junction_3	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGCTTTCATTTGAAGG	NA	False	NA	NA	False	AATAAA	-14	NA	45457146	45520180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_45457876_45481611_45481656_45483744_45483974_45514841_45514992_45516116_45516243_45516388_45516508_45517359
ENSMUSG00000049106.8_0	chr12	-	4828	9	FSM	ENSMUSG00000049106.8	ENSMUST00000054145.8	5706	9	31	847	31	-847	multi-exon	FALSE	canonical	3	23	junction_5	6.59071316323203	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATACAAAAAAAGTTATAA	NA	False	NA	NA	False	ATTAAA	-21	NA	80483344	80383468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_80387051_80395093_80395222_80410777_80410845_80423291_80423506_80444426_80444557_80445542_80445683_80446722_80446760_80451328_80451473_80482958
ENSMUSG00000049106.8_1	chr12	-	2260	1	ISM	ENSMUSG00000049106.8	ENSMUST00000054145.8	5706	9	97653	841	37744	-841	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGTTATAACCCCTC	NA	False	NA	NA	False	ATTAAA	-27	NA	80385722	80383462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_80383500_80385700
ENSMUSG00000049106.8_2	chr12	-	4665	4	ISM	ENSMUSG00000049106.8	ENSMUST00000054145.8	5706	9	60041	2	132	-2	3prime_fragment	FALSE	canonical	3	25	junction_2	5.8878405775519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTGCCTTCCTCCTCT	NA	False	NA	-4	True	AATAAA	-14	NA	80423334	80382623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_80387051_80395093_80395222_80410777_80410845_80423291
ENSMUSG00000049106.8_4	chr12	-	4509	9	NIC	ENSMUSG00000049106.8	novel	5706	9	NA	NA	7	-855	combination_of_known_junctions	FALSE	canonical	3	3	junction_8	11.9993489406717	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCCTTTATATACAAAAAA	NA	False	NA	NA	False	ATTAAA	-13	NA	80483212	80383476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_80387051_80395093_80395222_80410777_80410845_80423291_80423506_80444426_80444557_80445542_80445683_80446722_80446760_80451328_80451473_80483137
ENSMUSG00000049106.8_5	chr12	-	4027	5	ISM	ENSMUSG00000049106.8	ENSMUST00000054145.8	5706	9	38915	845	-20994	-845	3prime_fragment	FALSE	canonical	3	25	junction_2	5.2618912949623	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATACAAAAAAAGTTATAACC	NA	False	NA	NA	False	ATTAAA	-23	NA	80444460	80383466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_80387051_80395093_80395222_80410777_80410845_80423291_80423506_80444426
ENSMUSG00000049119.15_0	chr4	+	2100	3	FSM	ENSMUSG00000049119.15	ENSMUST00000054857.13	3210	3	59	1051	-10	104	multi-exon	FALSE	canonical	3	35	junction_1	17	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTGAGAGCAGAATCTT	7	True	NA	6	True	ATTAAA	-20	NA	5644179	5800050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_5644411_5729570_5729658_5798268
ENSMUSG00000049119.15_1	chr4	+	2214	4	FSM	ENSMUSG00000049119.15	ENSMUST00000124256.8	618	4	72	-1668	-28	104	multi-exon	FALSE	canonical	3	14	junction_1	25.9272486435067	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTGAGAGCAGAATCTT	-11	True	NA	6	True	ATTAAA	-20	NA	5644161	5800050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_5644411_5678902_5678999_5729570_5729658_5798268
ENSMUSG00000049124.5_0	chr17	-	378	1	FSM	ENSMUSG00000049124.5	ENSMUST00000053575.5	231	1	-28	-119	-28	119	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAATAAAATA	NA	False	NA	NA	False	AATAAA	-15	NA	26318223	26317845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26317800_26318200
ENSMUSG00000049154.13_0	chr11	-	504	4	FSM	ENSMUSG00000049154.13	ENSMUST00000239007.2	561	4	50	7	50	1	multi-exon	FALSE	canonical	3	25	junction_1	3.29983164553722	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCTACAGAAGACTATG	NA	False	NA	NA	False	AATAAA	-14	NA	58692736	58683635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_58683826_58687380_58687485_58689461_58689522_58692586
ENSMUSG00000049164.8_0	chr19	+	6933	5	NNC	ENSMUSG00000049164.8	novel	6568	3	NA	NA	-544	-2	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	40.2453413453036	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGAGTTTCTTCTTTT	NA	False	NA	39	True	ATTAAA	-16	NA	40882604	40906385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_40882790_40885527_40885610_40896502_40896648_40899476_40899554_40899941
ENSMUSG00000049164.8_17	chr19	+	4096	1	ISM	ENSMUSG00000049164.8	ENSMUST00000050092.7	6840	5	19141	6	5687	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGAGTTTCTTCTTTT	7575	False	NA	39	True	ATTAAA	-16	NA	40902289	40906385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_40902300_40906400
ENSMUSG00000049164.8_3	chr19	+	6811	5	FSM	ENSMUSG00000049164.8	ENSMUST00000050092.7	6840	5	23	6	23	-2	multi-exon	FALSE	canonical	3	75	junction_1	19.3196790863617	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGAGTTTCTTCTTTT	NA	False	NA	39	True	ATTAAA	-16	NA	40883171	40906385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_40883235_40885527_40885610_40896502_40896648_40899476_40899554_40899941
ENSMUSG00000049184.7_2	chr8	+	2032	3	NNC	ENSMUSG00000049184.7	novel	1795	2	NA	NA	-502	1	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	3	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGTTTGGATTCTTATTT	NA	False	NA	23	True	AATAAA	-17	NA	33875850	33907496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_33876092_33876357_33877237_33906584
ENSMUSG00000049184.7_5	chr8	+	1680	1	NIC	ENSMUSG00000049184.7	novel	1795	2	NA	NA	29425	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTCACTGACAATCCAAT	NA	False	NA	-16	True	AGTAAA	-27	NA	33905777	33907457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_33905800_33907500
ENSMUSG00000049225.15_0	chr4	-	2541	2	FSM	ENSMUSG00000049225.15	ENSMUST00000108297.3	4201	2	33	1627	1	0	multi-exon	FALSE	canonical	3	21	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACTGCTATGTTTA	-5	True	NA	NA	False	AATAAA	-16	NA	11966419	11959810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_11962234_11966301
ENSMUSG00000049225.15_1	chr4	-	2574	3	FSM	ENSMUSG00000049225.15	ENSMUST00000108299.2	2588	3	8	6	1	-2	multi-exon	FALSE	canonical	3	47	junction_2	3	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGAGACTGCTATGTT	-5	True	NA	NA	False	AATAAA	-14	NA	11966419	11959812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_11962234_11965613_11965649_11966301
ENSMUSG00000049225.15_3	chr4	-	2973	3	FSM	ENSMUSG00000049225.15	ENSMUST00000095144.10	2506	3	-471	4	22	0	multi-exon	FALSE	canonical	3	10	junction_2	21.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACTGCTATGTTTA	16	True	NA	NA	False	AATAAA	-16	NA	11966398	11959810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_11962234_11965613_11965649_11965883
ENSMUSG00000049225.15_4	chr4	-	3205	2	FSM	ENSMUSG00000049225.15	ENSMUST00000108301.8	2635	2	-574	4	25	0	multi-exon	FALSE	canonical	3	53	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACTGCTATGTTTA	19	True	NA	NA	False	AATAAA	-16	NA	11966395	11959810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_11962234_11965613
ENSMUSG00000049225.15_5	chr4	-	1673	1	ISM	ENSMUSG00000049225.15	ENSMUST00000108297.3	4201	2	4965	1631	4334	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAAGAGACTGCTATG	4927	False	NA	NA	False	AATAAA	-12	NA	11961487	11959814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_11959800_11961500
ENSMUSG00000049232.4_0	chr6	+	2941	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	58	8	58	-8	multi-exon	FALSE	canonical	3	130	junction_1	0	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGAATTTTGATGACTT	NA	False	NA	1	True	NA	NA	NA	59185912	59189010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_59186167_59186323
ENSMUSG00000049232.4_1	chr6	+	2149	1	ISM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	1007	8	1007	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGAATTTTGATGACTT	NA	False	NA	1	True	NA	NA	NA	59186861	59189010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_59186900_59189000
ENSMUSG00000049233.8_0	chr13	-	893	1	FSM	ENSMUSG00000049233.8	ENSMUST00000061241.8	586	1	-28	-279	-28	279	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-12	NA	107551257	107550364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_107550400_107551300
ENSMUSG00000049235.9_1	chr14	+	316	1	FSM	ENSMUSG00000049235.9	ENSMUST00000094051.6	1647	1	1296	35	1296	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-16	NA	43952484	43952800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_43952500_43952800
ENSMUSG00000049281.17_0	chr9	+	3440	7	NIC	ENSMUSG00000049281.17	novel	4150	7	NA	NA	10	-22	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	1.06718737290547	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGCGTCTCTGAAGAC	NA	False	NA	NA	False	AATAAA	-18	NA	40180522	40202892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_40180899_40181263_40181344_40188363_40188528_40190670_40190897_40193719_40193859_40199669_40199750_40200517
ENSMUSG00000049281.17_1	chr9	+	4127	7	FSM	ENSMUSG00000049281.17	ENSMUST00000049941.12	4150	7	20	3	20	-3	multi-exon	FALSE	canonical	0	0	junction_6	1.06718737290547	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTGCTCTGGGTTTGCT	NA	False	NA	NA	False	AATAAA	-37	NA	40180532	40202911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_40180899_40181263_40181344_40188363_40188528_40190670_40190897_40193719_40193859_40199669_40199750_40199839
ENSMUSG00000049285.5_0	chr5	+	1308	1	FSM	ENSMUSG00000049285.5	ENSMUST00000057773.5	1308	1	-2	2	-2	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACTGTCCTGATGTAAAT	5029	False	NA	NA	False	AATAAA	-15	NA	138192573	138193881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138192600_138193900
ENSMUSG00000049287.6_0	chr11	-	4032	3	FSM	ENSMUSG00000049287.6	ENSMUST00000054523.6	4021	3	-28	17	-28	-17	multi-exon	FALSE	canonical	3	10	junction_1	4.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGGTGTAGATCTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	59054593	59046211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59049486_59049663_59050005_59054176
ENSMUSG00000049288.5_0	chr3	+	2367	1	ISM	ENSMUSG00000049288.5	ENSMUST00000062058.5	3312	6	22651	5	5499	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAGCCAGAATGACTTTT	2502	False	NA	14	True	ATTAAA	-16	NA	96531115	96533482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_96531100_96533500
ENSMUSG00000049291.7_1	chr11	-	2763	5	FSM	ENSMUSG00000049291.7	ENSMUST00000061481.7	1243	5	-4	-1516	-4	1516	multi-exon	TRUE	canonical	2	4	junction_3	3.57071421427143	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATTTGCTTCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	59266487	59261978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59263997_59264251_59264395_59264991_59265264_59265982_59266146_59266320
ENSMUSG00000049295.18_0	chr14	-	2915	5	FSM	ENSMUSG00000049295.18	ENSMUST00000067549.15	2933	5	14	4	0	0	multi-exon	FALSE	canonical	3	82	junction_4	128.195895020082	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCCCTGTGTGTGTCT	4708	False	NA	-11	True	AATAAA	-16	NA	52258176	52243542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52257979
ENSMUSG00000049295.18_1	chr14	-	2826	4	FSM	ENSMUSG00000049295.18	ENSMUST00000228580.2	2812	4	-18	4	0	0	multi-exon	FALSE	canonical	3	96	junction_3	140.753527684231	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCCCTGTGTGTGTCT	4708	False	NA	-11	True	AATAAA	-16	NA	52258176	52243542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52257979
ENSMUSG00000049295.18_16	chr14	-	3232	4	ISM	ENSMUSG00000049295.18	ENSMUST00000226522.2	2804	5	4010	9	3	0	3prime_fragment	FALSE	canonical	3	255	junction_3	69.2451362110646	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCCCTGTGTGTGTCT	9775	False	NA	-11	True	AATAAA	-16	NA	52248029	52243542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426
ENSMUSG00000049295.18_2	chr14	-	2807	5	FSM	ENSMUSG00000049295.18	ENSMUST00000226522.2	2804	5	-12	9	-12	0	multi-exon	FALSE	canonical	3	80	junction_4	128.961961446002	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCCCTGTGTGTGTCT	5753	False	NA	-11	True	AATAAA	-16	NA	52252051	52243542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52251962
ENSMUSG00000049295.18_3	chr14	-	2993	6	FSM	ENSMUSG00000049295.18	ENSMUST00000166169.4	3017	6	24	0	24	0	multi-exon	FALSE	canonical	3	13	junction_5	162.277540035582	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCCCTGTGTGTGTCT	5763	False	NA	-11	True	AATAAA	-16	NA	52257121	52243542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52252404_52252510_52256951
ENSMUSG00000049295.18_7	chr14	-	2259	3	ISM	ENSMUSG00000049295.18	ENSMUST00000226522.2	2804	5	5292	7	1285	-2	3prime_fragment	FALSE	canonical	3	352	junction_2	36	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGCCCTGTGTGTGTCTGC	9588	False	NA	-9	True	AATAAA	-18	NA	52246747	52243540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52244605_52244820_52244953_52245684
ENSMUSG00000049299.15_0	chr11	+	735	5	FSM	ENSMUSG00000049299.15	ENSMUST00000102602.8	751	5	14	2	14	-2	multi-exon	FALSE	canonical	3	239	junction_1	97.8682149627753	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTGCCTGAGTGTGAGT	NA	False	NA	14	True	AATAAA	-23	NA	69214819	69216617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69214893_69214983_69215083_69215220_69215292_69215649_69215789_69216264
ENSMUSG00000049299.15_2	chr11	+	732	4	FSM	ENSMUSG00000049299.15	ENSMUST00000102601.10	759	4	27	0	15	0	multi-exon	FALSE	canonical	3	452	junction_2	10.7082522694727	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214915	69216619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216264
ENSMUSG00000049299.15_5	chr11	+	286	1	ISM	ENSMUSG00000049299.15	ENSMUST00000102602.8	751	5	1522	6	1064	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCTGCTGCCTGAGTGT	NA	False	NA	10	True	AATAAA	-19	NA	69216327	69216613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_69216300_69216600
ENSMUSG00000049300.12_0	chr3	-	3039	2	FSM	ENSMUSG00000049300.12	ENSMUST00000190378.2	3051	2	11	1	11	-1	multi-exon	FALSE	canonical	3	26	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTTGTAACCTGGTCTA	NA	False	NA	-9	True	AATAAA	-17	NA	110158298	110153428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_110155172_110157002
ENSMUSG00000049300.12_1	chr3	-	2168	1	FSM	ENSMUSG00000049300.12	ENSMUST00000106567.2	2450	1	17	265	12	-265	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTGAGGTCTTTAGACG	NA	False	NA	-15	True	AATAAA	-19	NA	110158297	110156129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_110156100_110158300
ENSMUSG00000049303.11_0	chr19	-	1902	8	FSM	ENSMUSG00000049303.11	ENSMUST00000059295.10	3581	8	285	1394	-6	415	multi-exon	FALSE	canonical	1	2	junction_3	1.55182578445717	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCTGTGGTGGCAAGGC	NA	False	NA	NA	False	AATAAA	-13	NA	4527190	4497329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4497889_4500956_4501091_4502304_4502426_4503792_4504009_4506522_4506916_4510644_4510839_4517934_4517992_4526962
ENSMUSG00000049305.7_0	chr9	+	1679	2	FSM	ENSMUSG00000049305.7	ENSMUST00000061209.7	3092	2	28	1385	20	-1253	multi-exon	FALSE	canonical	3	208	junction_1	0	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCGGTCTCCTTGCT	215	False	NA	10	True	NA	NA	NA	108337753	108341752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108337817_108340136
ENSMUSG00000049305.7_7	chr9	+	1615	1	ISM	ENSMUSG00000049305.7	ENSMUST00000061209.7	3092	2	2412	1385	1519	-1253	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCGGTCTCCTTGCT	180	False	NA	10	True	NA	NA	NA	108340137	108341752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108340100_108341800
ENSMUSG00000049307.7_0	chr9	-	3795	1	FSM	ENSMUSG00000049307.7	ENSMUST00000061498.7	4074	1	272	7	272	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACGAGCCTGTGTTTCTG	NA	False	NA	NA	False	ATTAAA	-45	NA	14663417	14659622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_14659600_14663400
ENSMUSG00000049313.9_0	chr9	-	2848	1	ISM	ENSMUSG00000049313.9	ENSMUST00000060989.9	10715	48	156663	67	6953	-67	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAATATCCACTGTGTG	NA	False	NA	-78	True	NA	NA	NA	41878930	41876082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_41876100_41878900
ENSMUSG00000049313.9_2	chr9	-	7173	48	FSM	ENSMUSG00000049313.9	ENSMUST00000060989.9	10715	48	5	3537	5	1482	multi-exon	TRUE	canonical	3	333	junction_27	73.2507244219374	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGAGAGAGTAATGGACG	NA	False	NA	-49	True	AATAAA	-5	NA	42035588	41879552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_41879967_41880939_41881153_41885232_41885426_41887653_41887761_41888731_41888907_41890625_41890791_41891921_41892042_41894201_41894387_41895731_41895832_41896853_41896937_41898761_41898835_41900000_41900106_41900649_41900763_41902607_41902778_41902914_41903042_41903599_41903732_41907466_41907617_41911539_41911696_41912766_41912902_41913849_41913982_41915281_41915414_41917101_41917210_41919474_41919601_41925750_41925871_41929411_41929535_41933631_41933746_41935591_41935766_41942174_41942314_41942964_41943212_41944860_41944953_41946738_41946871_41948344_41948518_41952288_41952375_41952859_41952989_41955202_41955390_41957778_41957958_41968566_41968656_41975010_41975085_41975282_41975401_41979092_41979286_41982367_41982538_41983540_41983643_41993083_41993265_42001240_42001309_42003604_42003767_42010440_42010567_42017723_42017841_42035124
ENSMUSG00000049321.18_10	chr11	-	3030	6	NNC	ENSMUSG00000049321.18	novel	2782	7	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	23.8109218637162	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTCATGGTA	NA	False	NA	-2	True	NA	NA	NA	50806980	50789540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_50792119_50796916_50796985_50801262_50801353_50801576_50801704_50803106_50803229_50806935
ENSMUSG00000049321.18_12	chr11	-	3087	6	NIC	ENSMUSG00000049321.18	novel	3069	6	NA	NA	4	-4	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	25.4055112131207	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGTTGCCTTGGTCATGG	NA	False	NA	-4	True	NA	NA	NA	50806988	50789542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_50792119_50796912_50796985_50801262_50801353_50801532_50801704_50803106_50803232_50806935
ENSMUSG00000049321.18_13	chr11	-	3081	6	FSM	ENSMUSG00000049321.18	ENSMUST00000116378.8	3069	6	-16	4	-6	-4	multi-exon	FALSE	canonical	3	8	junction_1	26.1763251813542	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGTTGCCTTGGTCATGG	NA	False	NA	-4	True	NA	NA	NA	50806985	50789542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_50792119_50796912_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
ENSMUSG00000049321.18_2	chr11	-	2201	1	ISM	ENSMUSG00000049321.18	ENSMUST00000109129.8	2803	4	9894	4	9894	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGTTGCCTTGGTCATGG	NA	False	NA	-4	True	NA	NA	NA	50791743	50789542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_50789500_50791700
ENSMUSG00000049321.18_3	chr11	-	3081	6	NNC	ENSMUSG00000049321.18	novel	3069	6	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	19.4668949758301	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGTTGCCTTGGTCATGG	NA	False	NA	-4	True	NA	NA	NA	50806989	50789542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_50792119_50796916_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
ENSMUSG00000049321.18_31	chr11	-	595	5	ISM	ENSMUSG00000049321.18	ENSMUST00000116378.8	3069	6	-11	7279	-1	-1	5prime_fragment	FALSE	canonical	3	29	junction_4	20.1308221391974	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAGTTCTTTAATGGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	50806980	50796817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
ENSMUSG00000049321.18_34	chr11	-	561	5	NIC	ENSMUSG00000049321.18	novel	539	5	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	24.8394846967484	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAGTTCTTTAATGGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	50806987	50796817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_50796985_50801262_50801353_50801576_50801704_50803106_50803232_50806935
ENSMUSG00000049321.18_4	chr11	-	3082	6	NNC	ENSMUSG00000049321.18	novel	3069	6	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_5	17.9710878913882	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGTTGCCTTGGTCATGG	NA	False	NA	-4	True	NA	NA	NA	50806987	50789542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_50792119_50796916_50796985_50801262_50801353_50801532_50801704_50803106_50803232_50806935
ENSMUSG00000049321.18_7	chr11	-	3171	7	NIC	ENSMUSG00000049321.18	novel	2782	7	NA	NA	-2	-4	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	29.9411459737636	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGTTGCCTTGGTCATGG	NA	False	NA	-4	True	NA	NA	NA	50806994	50789542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_50792119_50796432_50796514_50796912_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
ENSMUSG00000049321.18_9	chr11	-	3162	7	NNC	ENSMUSG00000049321.18	novel	2782	7	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	27.6887462097269	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCCTTGGTCATGGTAT	NA	False	NA	-1	True	NA	NA	NA	50806983	50789539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_50792119_50796432_50796514_50796916_50796985_50801262_50801353_50801532_50801704_50803106_50803232_50806935
ENSMUSG00000049323.9_0	chr11	+	7363	2	FSM	ENSMUSG00000049323.9	ENSMUST00000056907.7	7391	2	17	11	17	-11	multi-exon	FALSE	canonical	3	54	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGTGGCATCTGGGTTC	NA	False	NA	2	True	AATAAA	-10	NA	60668367	60679102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60671208_60674579
ENSMUSG00000049323.9_1	chr11	+	3522	1	FSM	ENSMUSG00000049323.9	ENSMUST00000102667.5	3544	1	19	3	18	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGACCTTTTTCAATGGT	NA	False	NA	NA	False	AATAAA	-13	NA	60668368	60671890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60668400_60671900
ENSMUSG00000049323.9_5	chr11	+	3419	1	ISM	ENSMUSG00000049323.9	ENSMUST00000056907.7	7391	2	7334	10	7334	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGTGGCATCTGGGTTCC	NA	False	NA	3	True	AATAAA	-11	NA	60675684	60679103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60675700_60679100
ENSMUSG00000049327.18_20	chr5	+	2824	7	ISM	ENSMUSG00000049327.18	ENSMUST00000147969.8	2112	8	284	-756	5	-9	3prime_fragment	FALSE	canonical	3	338	junction_1	172.952787392012	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGGCCACCTATGTGTTG	4692	False	NA	20	True	AATAAA	-29	NA	124583851	124600362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_124584148_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
ENSMUSG00000049327.18_23	chr5	+	2753	7	FSM	ENSMUSG00000049327.18	ENSMUST00000100709.7	1425	7	9	-1337	-3	-11	multi-exon	FALSE	canonical	3	345	junction_1	170.424388578109	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAAGGCCACCTATGTGT	4405	False	NA	18	True	AATAAA	-27	NA	124583564	124600360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124583792_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
ENSMUSG00000049327.18_24	chr5	+	2870	8	FSM	ENSMUSG00000049327.18	ENSMUST00000147969.8	2112	8	-3	-755	-3	-10	multi-exon	FALSE	canonical	3	31	junction_1	287.390653562537	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAAGGCCACCTATGTGTT	4405	False	NA	19	True	AATAAA	-28	NA	124583564	124600361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124583792_124584031_124584148_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
ENSMUSG00000049327.18_3	chr5	+	2696	8	FSM	ENSMUSG00000049327.18	ENSMUST00000059580.11	2739	8	36	7	-1	-7	multi-exon	FALSE	canonical	3	194	junction_1	242.120647949045	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCACCTATGTGTTGTT	NA	False	NA	22	True	AATAAA	-31	NA	124578028	124600364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124578079_124584031_124584148_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
ENSMUSG00000049327.18_5	chr5	+	2575	7	FSM	ENSMUSG00000049327.18	ENSMUST00000199798.5	1789	7	0	-786	0	-11	multi-exon	FALSE	canonical	3	73	junction_1	269.798330033544	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAAGGCCACCTATGTGT	NA	False	NA	18	True	AATAAA	-27	NA	124578029	124600360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124578079_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
ENSMUSG00000049339.17_0	chr1	+	2556	9	FSM	ENSMUSG00000049339.17	ENSMUST00000097694.11	2561	9	-3	8	-3	-2	multi-exon	FALSE	canonical	3	93	junction_6	8.45576726264388	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGCTGCCTGTCTGCC	NA	False	NA	7	True	AATAAA	-14	NA	75119426	75124549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75119773_75120012_75120120_75120566_75120598_75120947_75121084_75121265_75121351_75121603_75121748_75121902_75121998_75122323_75122460_75123073
ENSMUSG00000049339.17_2	chr1	+	2521	9	NIC	ENSMUSG00000049339.17	novel	2561	9	NA	NA	20	-3	intron_retention	FALSE	canonical	0	0	junction_7	34.3647712054074	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAACTGCTGCCTGTCTGC	NA	False	NA	6	True	AATAAA	-13	NA	75119457	75124548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_75119773_75120012_75120120_75120566_75120598_75120947_75121084_75121265_75121351_75121603_75121748_75121902_75121995_75122323_75122460_75123073
ENSMUSG00000049339.17_20	chr1	+	1056	1	ISM	ENSMUSG00000049339.17	ENSMUST00000188873.7	2477	9	4072	4	1546	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGCTGCCTGTCTGCC	NA	False	NA	7	True	AATAAA	-14	NA	75123493	75124549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_75123500_75124500
ENSMUSG00000049339.17_4	chr1	+	2445	10	FSM	ENSMUSG00000049339.17	ENSMUST00000190240.7	2438	10	-11	4	-3	-2	multi-exon	FALSE	canonical	3	9	junction_9	31.2054126359159	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGCTGCCTGTCTGCC	NA	False	NA	7	True	AATAAA	-14	NA	75119426	75124549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75119773_75120012_75120120_75120566_75120598_75120947_75121084_75121265_75121351_75121603_75121748_75121902_75121998_75122323_75122460_75123073_75123364_75123474
ENSMUSG00000049339.17_5	chr1	+	2471	9	FSM	ENSMUSG00000049339.17	ENSMUST00000188873.7	2477	9	4	2	-4	0	multi-exon	FALSE	canonical	0	0	junction_3	35.7840746701658	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGCTGCCTGTCTGCCTG	NA	False	NA	9	True	AATAAA	-16	NA	75119425	75124551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75119773_75120012_75120120_75120566_75120598_75121035_75121084_75121265_75121351_75121603_75121748_75121902_75121998_75122323_75122460_75123073
ENSMUSG00000049354.9_0	chr11	+	5710	7	FSM	ENSMUSG00000049354.9	ENSMUST00000058438.9	5750	7	33	7	5	-7	multi-exon	FALSE	canonical	3	184	junction_6	15.5527775297176	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAAATTTTTCTTGTGAT	4778	False	NA	8	True	AATAAA	-17	NA	105927730	105950143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_105928088_105937516_105937676_105938462_105938575_105938968_105939088_105942582_105942793_105944556_105944675_105945508
ENSMUSG00000049354.9_9	chr11	+	2700	1	ISM	ENSMUSG00000049354.9	ENSMUST00000058438.9	5750	7	19746	7	19718	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAAATTTTTCTTGTGAT	4091	False	NA	8	True	AATAAA	-17	NA	105947443	105950143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_105947400_105950100
ENSMUSG00000049357.12_0	chr18	-	3289	2	ISM	ENSMUSG00000049357.12	ENSMUST00000129566.2	2212	7	1331	9853	1331	-9853	5prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAGAAATATGT	NA	False	NA	NA	False	NA	NA	NA	34729067	34722850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_34726114_34729041
ENSMUSG00000049382.11_0	chr15	-	663	3	ISM	ENSMUSG00000049382.11	ENSMUST00000023952.10	1958	9	6454	8	6454	-8	3prime_fragment	FALSE	canonical	3	63	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGCTATGTATGCATTC	NA	False	NA	-2	True	AATAAA	-24	NA	101906463	101905140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_101905569_101906094_101906154_101906287
ENSMUSG00000049382.11_1	chr15	-	1797	9	FSM	ENSMUSG00000049382.11	ENSMUST00000023952.10	1958	9	148	13	148	-13	multi-exon	FALSE	canonical	3	49	junction_8	4.93552175559991	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGCTTTGCTATGTATG	6040	False	NA	-7	True	AATAAA	-19	NA	101912769	101905145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_101905569_101906094_101906154_101906287_101906509_101906825_101906952_101907208_101907374_101907865_101907962_101909014_101909076_101909851_101910061_101912332
ENSMUSG00000049387.11_0	chr5	-	562	3	FSM	ENSMUSG00000049387.11	ENSMUST00000050129.6	542	3	-26	6	-26	-6	multi-exon	FALSE	canonical	3	51	junction_2	6	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTACTAATAAGTTGTT	NA	False	NA	NA	False	AATAAA	-9	NA	71705574	71600172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_71600613_71660793_71660857_71705515
ENSMUSG00000049396.7_0	chr11	-	3415	2	FSM	ENSMUSG00000049396.7	ENSMUST00000102500.5	3540	2	118	7	-29	-7	multi-exon	FALSE	canonical	3	437	junction_1	0	1014	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTATCTTGAGCCTTTC	NA	False	NA	-8	True	AATAAA	-15	NA	76108372	76101403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_76104750_76108303
ENSMUSG00000049396.7_1	chr11	-	2375	1	ISM	ENSMUSG00000017286.16	ENSMUST00000169701.8	4203	9	30712	6	26621	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTATCTTGAGCCTTTCT	NA	False	NA	-7	True	AATAAA	-16	NA	76103777	76101402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_76101400_76103800
ENSMUSG00000049401.11_0	chr2	+	2187	9	NNC	ENSMUSG00000049401.11	novel	2449	7	NA	NA	-15	-6	at_least_one_novel_splicesite	TRUE	canonical	3	37	junction_7	18.4306131205666	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTGGCCGTGTTC	NA	False	NA	16	True	AATAAA	-16	NA	180231239	180237623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000_180236947_180236973_180237082_180237108
ENSMUSG00000049401.11_1	chr2	+	2241	7	FSM	ENSMUSG00000049401.11	ENSMUST00000029087.4	2449	7	202	6	-15	-6	multi-exon	FALSE	canonical	3	62	junction_6	11.4370256428652	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTGGCCGTGTTC	NA	False	NA	16	True	AATAAA	-16	NA	180231239	180237623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000
ENSMUSG00000049401.11_10	chr2	+	1971	5	ISM	ENSMUSG00000049401.11	ENSMUST00000029087.4	2449	7	2397	7	2180	-7	3prime_fragment	FALSE	canonical	3	62	junction_4	10.7238052947636	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTGTGGCCGTGTT	NA	False	NA	15	True	AATAAA	-15	NA	180233434	180237622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000
ENSMUSG00000049401.11_13	chr2	+	1320	1	ISM	ENSMUSG00000049401.11	ENSMUST00000029087.4	2449	7	5265	7	5048	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTGTGGCCGTGTT	1159	False	NA	15	True	AATAAA	-15	NA	180236302	180237622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_180236300_180237600
ENSMUSG00000049411.16_1	chr18	-	2545	15	FSM	ENSMUSG00000049411.16	ENSMUST00000209859.2	1426	15	16	-1135	0	0	multi-exon	FALSE	canonical	3	13	junction_4	4.03871569806491	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTCTGTATGTTTATA	NA	False	NA	NA	False	TTTAAA	-14	NA	12254571	12114997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_12116651_12126620_12126686_12176270_12176365_12180621_12180692_12191982_12192018_12197260_12197297_12200116_12200163_12201354_12201404_12203136_12203189_12207674_12207701_12217048_12217127_12237155_12237238_12246451_12246530_12251460_12251508_12254437
ENSMUSG00000049411.16_11	chr18	-	1387	1	ISM	ENSMUSG00000049411.16	ENSMUST00000050228.15	2802	13	138141	463	91304	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTCTGTATGTTTATA	5139	False	NA	NA	False	TTTAAA	-14	NA	12116384	12114997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_12115000_12116400
ENSMUSG00000049411.16_12	chr18	-	2499	14	NIC	ENSMUSG00000049411.16	novel	1426	15	NA	NA	-5	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	6.86557314974913	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAAATTGTCTGTATGTT	NA	False	NA	NA	False	TTTAAA	-10	NA	12254576	12115001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_12116651_12126620_12126686_12176270_12176365_12180621_12180692_12191982_12192018_12197260_12197297_12200116_12200163_12201354_12201404_12203136_12203189_12207674_12207701_12217048_12217127_12237155_12237238_12246451_12246530_12254437
ENSMUSG00000049411.16_16	chr18	-	2108	7	ISM	ENSMUSG00000049411.16	ENSMUST00000050228.15	2802	13	54254	463	7417	0	3prime_fragment	FALSE	canonical	3	13	junction_4	3.77123616632825	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTCTGTATGTTTATA	NA	False	NA	NA	False	TTTAAA	-14	NA	12200271	12114997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_12116651_12126620_12126686_12176270_12176365_12180621_12180692_12191982_12192018_12197260_12197297_12200116
ENSMUSG00000049411.16_28	chr18	-	4220	13	NIC	ENSMUSG00000049411.16	novel	1426	15	NA	NA	-3	1334	combination_of_known_splicesites	TRUE	canonical	0	0	junction_12	7.00545422430901	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTTTTTCTTTTCTTT	NA	False	NA	NA	False	TATAAA	-6	NA	12254574	12113200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_12116651_12126620_12126686_12176270_12176365_12180621_12180692_12191982_12192018_12197260_12197297_12200116_12200163_12201354_12201404_12203136_12203189_12207674_12207701_12217048_12217127_12237155_12237238_12254437
ENSMUSG00000049421.14_0	chr7	+	3622	3	FSM	ENSMUSG00000049421.14	ENSMUST00000050735.12	4006	3	376	8	1	0	multi-exon	FALSE	canonical	3	89	junction_1	24	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGATCCTTTGTTGTT	NA	False	NA	5	True	NA	NA	NA	29794594	29807039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29794637_29798952_29799148_29803654
ENSMUSG00000049421.14_10	chr7	+	2421	1	ISM	ENSMUSG00000049421.14	ENSMUST00000050735.12	4006	3	10400	8	7037	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGATCCTTTGTTGTT	NA	False	NA	5	True	NA	NA	NA	29804618	29807039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_29804600_29807000
ENSMUSG00000049421.14_8	chr7	+	3579	2	ISM	ENSMUSG00000049421.14	ENSMUST00000134365.8	594	4	4351	5	1372	0	intron_retention	FALSE	canonical	3	137	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGATCCTTTGTTGTT	NA	False	NA	5	True	NA	NA	NA	29798953	29807039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_29799148_29803654
ENSMUSG00000049422.8_1	chr10	+	633	4	FSM	ENSMUSG00000049422.8	ENSMUST00000058906.7	939	4	325	-19	325	0	multi-exon	FALSE	canonical	3	15821	junction_1	833.259196702256	3696	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCTGCTGTGTGCCCAT	7271	False	NA	20	True	ATTAAA	-17	NA	75771731	75773578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_75771839_75772071_75772280_75773140_75773289_75773408
ENSMUSG00000049439.14_0	chr1	+	2221	13	FSM	ENSMUSG00000049439.14	ENSMUST00000060608.13	2223	13	0	2	0	-2	multi-exon	FALSE	canonical	3	86	junction_1	9.38083151964686	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGGAGGATTGTTTTGT	NA	False	NA	26	True	AATAAA	-14	NA	60382481	60427217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_60382617_60391279_60391330_60392067_60392235_60393672_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297
ENSMUSG00000049470.14_0	chr11	+	9558	21	FSM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	-55	596	-55	-596	multi-exon	FALSE	canonical	3	75	junction_1	17.4421185639818	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACGTTTGCATGCACTG	NA	False	NA	32	True	AATAAA	-19	NA	53241604	53312061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415_53291334_53293304_53293394_53295182_53295430_53297407_53297503_53298706_53298771_53298883_53299021_53299225_53299298_53300094_53300189_53301742_53301787_53302662_53302884_53306214
ENSMUSG00000049470.14_15	chr11	+	9358	20	NIC	ENSMUSG00000049470.14	novel	10099	21	NA	NA	-55	-709	combination_of_known_junctions	FALSE	canonical	2	14	junction_4	26.2976779780271	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTCAATTTGTAAAACT	NA	False	NA	15	True	ATTAAA	-22	NA	53241604	53311948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415_53291334_53293304_53293394_53295182_53295430_53297407_53297503_53298706_53298771_53298883_53299021_53299225_53299298_53300094_53300189_53301742_53301787_53302662_53302884_53306214
ENSMUSG00000049470.14_18	chr11	+	8781	19	ISM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	21742	597	-5	-597	3prime_fragment	FALSE	canonical	3	79	junction_3	15.0996688705415	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTACGTTTGCATGCACT	NA	False	NA	31	True	AATAAA	-18	NA	53263401	53312060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415_53291334_53293304_53293394_53295182_53295430_53297407_53297503_53298706_53298771_53298883_53299021_53299225_53299298_53300094_53300189_53301742_53301787_53302662_53302884_53306214
ENSMUSG00000049470.14_26	chr11	+	7476	11	ISM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	49109	595	-4605	-595	3prime_fragment	FALSE	canonical	3	95	junction_4	10.1666120217111	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGTTTGCATGCACTGT	NA	False	NA	33	True	AATAAA	-20	NA	53290768	53312062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_53291334_53293304_53293394_53295182_53295430_53297407_53297503_53298706_53298771_53298883_53299021_53299225_53299298_53300094_53300189_53301742_53301787_53302662_53302884_53306214
ENSMUSG00000049470.14_29	chr11	+	6683	9	ISM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	53661	596	-53	-596	3prime_fragment	FALSE	canonical	3	95	junction_2	11.2131340400443	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACGTTTGCATGCACTG	NA	False	NA	32	True	AATAAA	-19	NA	53295320	53312061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_53295430_53297407_53297503_53298706_53298771_53298883_53299021_53299225_53299298_53300094_53300189_53301742_53301787_53302662_53302884_53306214
ENSMUSG00000049470.14_33	chr11	+	3804	1	ISM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	66599	595	6738	-595	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGTTTGCATGCACTGT	7439	False	NA	33	True	AATAAA	-20	NA	53308258	53312062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_53308300_53312100
ENSMUSG00000049482.17_0	chr8	+	1671	15	FSM	ENSMUSG00000049482.17	ENSMUST00000116412.8	3066	15	44	1351	-22	0	multi-exon	FALSE	canonical	3	114	junction_5	16.7624458787116	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACCCTACAGTACTTG	8906	False	NA	11	True	AATAAA	-13	NA	123202925	123208480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209_123208269_123208334
ENSMUSG00000049482.17_3	chr8	+	1739	14	ISM	ENSMUSG00000049482.17	ENSMUST00000116412.8	3066	15	40	1353	-26	-1	intron_retention	FALSE	canonical	3	114	junction_5	16.680782976529	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGAAAACCCTACAGTACT	8902	False	NA	9	True	AATAAA	-11	NA	123202921	123208478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209
ENSMUSG00000049488.15_0	chr4	-	3446	28	FSM	ENSMUSG00000049488.15	ENSMUST00000050686.10	3456	28	1	9	1	-1	multi-exon	FALSE	canonical	3	27	junction_10	5.81280927905584	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTAAAATTTTGGTTTGC	5	True	NA	NA	False	AATAAA	-23	NA	12087956	12039363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_12039893_12040634_12040778_12043464_12043568_12045794_12045900_12046002_12046120_12047197_12047315_12047809_12047891_12051387_12051529_12053446_12053587_12053674_12053775_12054745_12054833_12055030_12055130_12057315_12057415_12058520_12058578_12061754_12061861_12063034_12063159_12063673_12063831_12068867_12068934_12069413_12069492_12070236_12070346_12070448_12070604_12073893_12073957_12075454_12075530_12075622_12075693_12077335_12077436_12079874_12079969_12085911_12086001_12087714
ENSMUSG00000049488.15_12	chr4	-	3937	27	NIC	ENSMUSG00000049488.15	novel	3456	28	NA	NA	0	-6	intron_retention	FALSE	canonical	3	27	junction_9	5.92220273269166	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTACTTAAAATTTTGG	4	True	NA	NA	False	AATAAA	-18	NA	12087957	12039368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_12039893_12040634_12040778_12043464_12043568_12045794_12045900_12046002_12046120_12047197_12047891_12051387_12051529_12053446_12053587_12053674_12053775_12054745_12054833_12055030_12055130_12057315_12057415_12058520_12058578_12061754_12061861_12063034_12063159_12063673_12063831_12068867_12068934_12069413_12069492_12070236_12070346_12070448_12070604_12073893_12073957_12075454_12075530_12075622_12075693_12077335_12077436_12079874_12079969_12085911_12086001_12087714
ENSMUSG00000049488.15_15	chr4	-	234	1	ISM	ENSMUSG00000049488.15	ENSMUST00000050686.10	3456	28	48361	8	48331	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAAATTTTGGTTTGCG	NA	False	NA	NA	False	AATAAA	-24	NA	12039596	12039362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_12039400_12039600
ENSMUSG00000049488.15_9	chr4	-	3087	26	ISM	ENSMUSG00000049488.15	ENSMUST00000050686.10	3456	28	8018	8	7988	0	3prime_fragment	FALSE	canonical	3	27	junction_10	6.02049831824576	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAAATTTTGGTTTGCG	8022	False	NA	NA	False	AATAAA	-24	NA	12079939	12039362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_12039893_12040634_12040778_12043464_12043568_12045794_12045900_12046002_12046120_12047197_12047315_12047809_12047891_12051387_12051529_12053446_12053587_12053674_12053775_12054745_12054833_12055030_12055130_12057315_12057415_12058520_12058578_12061754_12061861_12063034_12063159_12063673_12063831_12068867_12068934_12069413_12069492_12070236_12070346_12070448_12070604_12073893_12073957_12075454_12075530_12075622_12075693_12077335_12077436_12079874
ENSMUSG00000049489.6_0	chr11	-	1170	1	FSM	ENSMUSG00000049489.6	ENSMUST00000059468.6	1224	1	48	6	48	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGCACCAGAGTCTGCCTT	6643	False	NA	-8	True	AATAAA	-31	NA	78642507	78641337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78641300_78642500
ENSMUSG00000049493.14_0	chr9	-	3686	16	FSM	ENSMUSG00000049493.14	ENSMUST00000093800.9	3704	16	10	8	10	-8	multi-exon	FALSE	canonical	3	26	junction_4	11.5231168623	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAGAATTTGTGTTTATT	NA	False	NA	-6	True	AATAAA	-11	NA	95727329	95634702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_95636491_95636713_95636839_95643365_95643490_95643986_95644121_95647743_95647859_95651146_95651226_95655570_95655767_95657360_95657457_95658518_95658662_95658741_95658908_95664422_95664505_95666152_95666286_95667542_95667673_95668985_95669150_95677814_95677920_95727223
ENSMUSG00000049493.14_1	chr9	-	2860	10	ISM	ENSMUSG00000049493.14	ENSMUST00000093800.9	3704	16	68541	5	38661	-5	3prime_fragment	FALSE	canonical	3	26	junction_4	13.2058722441342	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAATTTGTGTTTATTTCA	NA	False	NA	-3	True	AATAAA	-14	NA	95658798	95634699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_95636491_95636713_95636839_95643365_95643490_95643986_95644121_95647743_95647859_95651146_95651226_95655570_95655767_95657360_95657457_95658518_95658662_95658741
ENSMUSG00000049493.14_3	chr9	-	1582	1	ISM	ENSMUSG00000049493.14	ENSMUST00000093800.9	3704	16	91059	4	61179	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTTGTGTTTATTTCAT	NA	False	NA	-2	True	AATAAA	-15	NA	95636280	95634698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_95634700_95636300
ENSMUSG00000049502.18_0	chr16	-	5241	5	FSM	ENSMUSG00000049502.18	ENSMUST00000081933.14	5309	5	59	9	59	-9	multi-exon	FALSE	canonical	3	12	junction_3	7.25861557047899	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAACAGACTGTGTGGTTT	9910	False	NA	-3	True	AATAAA	-15	NA	35759462	35746889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_35749739_35751742_35751961_35752645_35754170_35756746_35756998_35759063
ENSMUSG00000049502.18_1	chr16	-	3005	2	ISM	ENSMUSG00000049502.18	ENSMUST00000081933.14	5309	5	7626	6	7626	-6	3prime_fragment	FALSE	canonical	3	18	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGACTGTGTGGTTTCCC	NA	False	NA	0	True	AATAAA	-18	NA	35751895	35746886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_35749739_35751742
ENSMUSG00000049502.18_2	chr16	-	3606	3	ISM	ENSMUSG00000049502.18	ENSMUST00000081933.14	5309	5	6340	6	6340	-6	3prime_fragment	FALSE	canonical	3	18	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGACTGTGTGGTTTCCC	NA	False	NA	0	True	AATAAA	-18	NA	35753181	35746886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_35749739_35751742_35751961_35752645
ENSMUSG00000049502.18_3	chr16	-	1639	1	ISM	ENSMUSG00000049502.18	ENSMUST00000081933.14	5309	5	10992	10	10992	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAACAGACTGTGTGGTT	NA	False	NA	-4	True	AATAAA	-14	NA	35748529	35746890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_35746900_35748500
ENSMUSG00000049502.18_4	chr16	-	2447	3	FSM	ENSMUSG00000049502.18	ENSMUST00000114885.3	2649	3	201	1	201	-1	multi-exon	FALSE	canonical	3	12	junction_1	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGGCCTCATGTCTTTTT	9997	False	NA	NA	False	NA	NA	NA	35759320	35752230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_35754170_35756746_35756998_35759063
ENSMUSG00000049504.13_12	chr3	+	2469	3	ISM	ENSMUSG00000049504.13	ENSMUST00000058577.5	4472	13	14424	3	-41	-3	3prime_fragment	FALSE	canonical	3	36	junction_1	3.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCACAAACTATAGAAGTGT	NA	False	NA	15	True	AATAAA	-11	NA	53385510	53389173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_53386588_53386980_53387132_53387932
ENSMUSG00000049504.13_13	chr3	+	1366	2	ISM	ENSMUSG00000049504.13	ENSMUST00000058577.5	4472	13	15920	3	1455	-3	3prime_fragment	FALSE	canonical	3	43	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCACAAACTATAGAAGTGT	NA	False	NA	15	True	AATAAA	-11	NA	53387006	53389173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_53387132_53387932
ENSMUSG00000049504.13_14	chr3	+	1096	1	Genic_Genomic	ENSMUSG00000049504.13	novel	NA	NA	NA	NA	2530	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACTATAGAAGTGTTTTA	NA	False	NA	19	True	AATAAA	-15	NA	53388081	53389177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_+_53388100_53389200
ENSMUSG00000049504.13_2	chr3	+	4461	13	FSM	ENSMUSG00000049504.13	ENSMUST00000058577.5	4472	13	11	0	11	0	multi-exon	FALSE	canonical	3	36	junction_11	9.75071222469871	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACTATAGAAGTGTTTT	NA	False	NA	18	True	AATAAA	-14	NA	53371097	53389176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_53371741_53374522_53374589_53376901_53376971_53377693_53377789_53378844_53378939_53379396_53379508_53380904_53380989_53382108_53382188_53382735_53382832_53383077_53383123_53384903_53386588_53386980_53387132_53387932
ENSMUSG00000049504.13_3	chr3	+	2014	11	ISM	ENSMUSG00000049504.13	ENSMUST00000058577.5	4472	13	-5	3657	-5	-1822	5prime_fragment	FALSE	canonical	3	39	junction_7	8.96437393240599	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAAATGACACACACTTAA	NA	False	NA	NA	False	NA	NA	NA	53371081	53385519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_53371741_53374522_53374589_53376901_53376971_53377693_53377789_53378844_53378939_53379396_53379508_53380904_53380989_53382108_53382188_53382735_53382832_53383077_53383123_53384903
ENSMUSG00000049504.13_6	chr3	+	1138	7	FSM	ENSMUSG00000049504.13	ENSMUST00000141418.2	1519	7	-202	583	64	-583	multi-exon	FALSE	canonical	3	46	junction_1	7.95124029458437	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTAGGTTCTCTATGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	53371150	53381017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_53371741_53374522_53374589_53376901_53376971_53377693_53377789_53378844_53378939_53379396_53379508_53380904
ENSMUSG00000049511.6_0	chr9	-	1534	1	ISM	ENSMUSG00000049511.6	ENSMUST00000183482.2	4724	2	3999	5	2786	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTTTTTAGTAGTAGT	NA	False	NA	NA	False	AATAAA	-41	NA	81511882	81510348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_81510300_81511900
ENSMUSG00000049511.6_1	chr9	-	3999	2	FSM	ENSMUSG00000049511.6	ENSMUST00000183482.2	4724	2	-23	748	-23	-748	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGTTGTTTGCCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	81515904	81511091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_81514925_81515738
ENSMUSG00000049516.10_1	chr7	-	5207	6	FSM	ENSMUSG00000049516.10	ENSMUST00000061639.10	5223	6	8	8	8	-8	multi-exon	FALSE	canonical	3	20	junction_2	5.03587132480567	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGATATTTTTACTGGTT	9280	False	NA	-13	True	ATTAAA	-7	NA	46658151	46640151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_46643135_46644312_46644391_46645764_46645934_46647219_46648753_46649518_46649634_46657822
ENSMUSG00000049516.10_2	chr7	-	3702	4	ISM	ENSMUSG00000049516.10	ENSMUST00000061639.10	5223	6	10473	3	10297	-3	3prime_fragment	FALSE	canonical	3	20	junction_2	6.23609564462324	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTACTGGTTTTCAT	NA	False	NA	-8	True	ATTAAA	-12	NA	46647686	46640146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_46643135_46644312_46644391_46645764_46645934_46647219
ENSMUSG00000049516.10_3	chr7	-	2001	1	ISM	ENSMUSG00000049516.10	ENSMUST00000061639.10	5223	6	16014	1	15838	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTACTGGTTTTCATTT	NA	False	NA	-6	True	ATTAAA	-14	NA	46642145	46640144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_46640100_46642100
ENSMUSG00000049517.9_1	chr13	+	504	4	FSM	ENSMUSG00000049517.9	ENSMUST00000051955.9	937	4	207	226	-52	0	multi-exon	FALSE	canonical	3	13520	junction_1	3048.72640075601	1843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATATTTTGTGTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	91071283	91072843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_91071319_91071705_91071866_91072444_91072566_91072655
ENSMUSG00000049517.9_10	chr13	+	420	3	ISM	ENSMUSG00000049517.9	ENSMUST00000224463.2	658	4	419	-1	419	0	3prime_fragment	FALSE	canonical	3	19809	junction_2	171.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATATTTTGTGTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	91071754	91072843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_91071866_91072444_91072566_91072655
ENSMUSG00000049521.3_0	chr15	+	2540	3	FSM	ENSMUSG00000049521.3	ENSMUST00000059619.3	2560	3	18	2	18	-2	multi-exon	FALSE	canonical	3	20	junction_1	1.5	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTTGACCTTGGGGAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	78726841	78735095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78726926_78731294_78732020_78733364
ENSMUSG00000049532.12_0	chr14	-	2264	1	ISM	ENSMUSG00000049532.12	ENSMUST00000135523.5	4773	2	2877	11	2877	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTTTTGTGTGTTTCTC	NA	False	NA	NA	False	ATTAAA	-13	NA	52550903	52548639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52548600_52550900
ENSMUSG00000049532.12_1	chr14	-	4675	2	FSM	ENSMUSG00000049532.12	ENSMUST00000135523.5	4773	2	87	11	87	-6	multi-exon	FALSE	canonical	1	1	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTTTTGTGTGTTTCTC	NA	False	NA	NA	False	ATTAAA	-13	NA	52553693	52548639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52553121_52553499
ENSMUSG00000049536.6_1	chrX	+	1161	2	FSM	ENSMUSG00000049536.6	ENSMUST00000055104.6	2803	2	34	1608	34	-1608	multi-exon	FALSE	canonical	3	18	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCCAATGTTTCTTCTGA	NA	False	NA	NA	False	AATAAA	-22	NA	135608764	135610619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_135608838_135609531
ENSMUSG00000049539.4_0	chr13	+	744	1	FSM	ENSMUSG00000049539.4	ENSMUST00000055770.4	741	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACATAACTCAAAGAGCCT	NA	False	NA	NA	False	TATAAA	-28	NA	23947648	23948392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_23947600_23948400
ENSMUSG00000049550.18_1	chr5	-	5944	17	NIC	ENSMUSG00000049550.18	novel	6133	24	NA	NA	5720	-2	intron_retention	FALSE	canonical	3	32	junction_10	10.817917717842	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTGGTTGGTTGGTTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	123768617	123715859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123751130_123753399_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287
ENSMUSG00000049550.18_10	chr5	-	7860	26	NIC	ENSMUSG00000049550.18	novel	5883	25	NA	NA	-13	-222	intron_retention	FALSE	canonical	0	0	junction_17	15.1511847721556	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTCTGCGTCTCTCTGTC	9889	False	NA	NA	False	GATAAA	-36	NA	123822401	123716151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123751130_123753399_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123777018_123777052_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
ENSMUSG00000049550.18_11	chr5	-	7035	21	NIC	ENSMUSG00000049550.18	novel	6133	24	NA	NA	1661	0	intron_retention	FALSE	canonical	3	32	junction_10	10.5559225082415	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAATGTTTTGGGTCTCT	NA	False	NA	-28	True	ATTAAA	-23	NA	123784279	123715880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123751130_123753399_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123778556_123778618_123779840_123779945_123780481_123780680_123784145
ENSMUSG00000049550.18_12	chr5	-	5547	24	FSM	ENSMUSG00000049550.18	ENSMUST00000111564.8	5609	24	-12	74	-9	-2	multi-exon	FALSE	canonical	3	15	junction_9	12.9445523936893	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAACAAACTATGGAAAGC	9893	False	NA	-79	True	AATAAA	-18	NA	123822397	123715931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768515_123769233_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
ENSMUSG00000049550.18_13	chr5	-	6609	25	NIC	ENSMUSG00000049550.18	novel	5609	24	NA	NA	-5	3	combination_of_known_junctions	FALSE	canonical	3	18	junction_16	11.5125987750618	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCCGTCCTTGTTTTCTG	9897	False	NA	NA	False	AATAAA	-21	NA	123822393	123717133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123751130_123753399_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768515_123769233_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
ENSMUSG00000049550.18_3	chr5	-	8049	25	NIC	ENSMUSG00000049550.18	novel	5883	25	NA	NA	-9	4	intron_retention	FALSE	canonical	3	32	junction_10	10.473428680873	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTATGGAAAGCAGTATT	9893	False	NA	-73	True	AATAAA	-24	NA	123822397	123715925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123751130_123753399_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
ENSMUSG00000049550.18_31	chr5	-	8230	27	NIC	ENSMUSG00000049550.18	novel	5883	25	NA	NA	-7	0	intron_retention	FALSE	canonical	2	5	junction_18	15.4693818605634	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAATGTTTTGGGTCTCT	9895	False	NA	-28	True	ATTAAA	-23	NA	123822395	123715880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123751130_123753399_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123773236_123773342_123777018_123777052_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
ENSMUSG00000049550.18_32	chr5	-	4685	25	FSM	ENSMUSG00000049550.18	ENSMUST00000111561.8	5883	25	-66	1264	-16	3	multi-exon	FALSE	canonical	2	3	junction_17	15.5321686795144	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCCGTCCTTGTTTTCTG	9886	False	NA	NA	False	AATAAA	-21	NA	123822404	123717133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123773236_123773342_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
ENSMUSG00000049550.18_5	chr5	-	4573	24	FSM	ENSMUSG00000049550.18	ENSMUST00000111566.9	6133	24	284	1276	-9	3	multi-exon	FALSE	canonical	3	15	junction_9	12.0135399352954	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCCGTCCTTGTTTTCTG	9893	False	NA	NA	False	AATAAA	-21	NA	123822397	123717133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
ENSMUSG00000049550.18_8	chr5	-	3095	10	ISM	ENSMUSG00000049550.18	ENSMUST00000154672.2	3544	12	4138	-1584	-1512	0	3prime_fragment	FALSE	canonical	3	39	junction_9	7.65135346697192	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAACTATGGAAAGCAG	NA	False	NA	-77	True	AATAAA	-20	NA	123751747	123715929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123751130
ENSMUSG00000049550.18_9	chr5	-	7987	26	NIC	ENSMUSG00000049550.18	novel	5883	25	NA	NA	-4	-2	intron_retention	FALSE	canonical	2	3	junction_18	15.0279739153354	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTGGTTGGTTGGTTTTT	9898	False	NA	-7	True	AATAAA	-16	NA	123822392	123715859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123751130_123753399_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768515_123769233_123773236_123773342_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
ENSMUSG00000049551.3_0	chr5	-	2299	1	FSM	ENSMUSG00000049551.3	ENSMUST00000062572.3	2293	1	-6	0	-6	0	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGTGTTCTATCTGGG	NA	False	NA	-2	True	AATAAA	-13	NA	135280090	135277791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135277800_135280100
ENSMUSG00000049553.12_10	chr6	+	3305	20	ISM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	0	27334	0	-9	5prime_fragment	FALSE	canonical	3	275	junction_3	22.8414989005135	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCATGCCTCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71886044	71932125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676
ENSMUSG00000049553.12_2	chr6	+	6094	34	FSM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	0	3122	0	-3122	multi-exon	FALSE	canonical	3	275	junction_3	38.128991835157	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATAATCAAGACTTAAGT	NA	False	NA	13	True	AATAAA	-23	NA	71886044	71956337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676_71931830_71938507_71938591_71940657_71940824_71941649_71941872_71942539_71942755_71943359_71943528_71944295_71944432_71944842_71945001_71949681_71949809_71951084_71951196_71951727_71952004_71953002_71953204_71954317_71954436_71954927_71955093_71955398
ENSMUSG00000049556.6_0	chr9	-	2774	2	FSM	ENSMUSG00000049556.6	ENSMUST00000114256.2	2782	2	-18	26	-18	-9	multi-exon	TRUE	canonical	3	12	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTCCTATAGCTAGTCG	6205	False	NA	NA	False	AATAAA	-11	NA	56542930	56526397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_56528600_56542358
ENSMUSG00000049556.6_1	chr9	-	3075	6	NIC	ENSMUSG00000049556.6	novel	3627	7	NA	NA	39	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1.6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAGTCGGAATGCAAACT	NA	False	NA	NA	False	AATAAA	-22	NA	56703543	56526386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_56528600_56560883_56561117_56581706_56581794_56592403_56592566_56682822_56682933_56703273
ENSMUSG00000049556.6_2	chr9	-	1543	1	ISM	ENSMUSG00000049556.6	ENSMUST00000053568.2	3295	4	64607	629	14982	1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCTAGTCGGAATGCAAAC	NA	False	NA	NA	False	AATAAA	-21	NA	56527930	56526387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_56526400_56527900
ENSMUSG00000049556.6_3	chr9	-	3748	7	FSM	ENSMUSG00000049556.6	ENSMUST00000210032.2	3627	7	-775	654	-445	-24	multi-exon	FALSE	canonical	0	0	junction_2	1.34370962471642	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAGAAAAAAACTATT	NA	False	NA	NA	False	NA	NA	NA	56704197	56526412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_56528600_56560883_56561117_56581706_56581794_56592403_56592566_56631584_56631630_56682822_56682933_56703273
ENSMUSG00000049556.6_7	chr9	-	2811	6	NIC	ENSMUSG00000049556.6	novel	3627	7	NA	NA	92	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	1.16619037896906	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCCTATAGCTAGTCGGA	NA	False	NA	NA	False	AATAAA	-13	NA	56703330	56526395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_56528600_56560883_56561117_56592403_56592566_56631584_56631630_56682822_56682933_56703273
ENSMUSG00000049562.7_0	chr19	+	2788	3	FSM	ENSMUSG00000049562.7	ENSMUST00000235575.2	2785	3	-6	3	-6	-3	multi-exon	FALSE	canonical	0	0	junction_1	2	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTACTCCTCCTGGCCTGTT	7960	False	NA	NA	False	NA	NA	NA	5618046	5621286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5618112_5618467_5618636_5618731
ENSMUSG00000049571.19_0	chr7	-	1059	9	ISM	ENSMUSG00000049571.19	ENSMUST00000166503.6	1438	14	8888	-174	-763	45	3prime_fragment	FALSE	canonical	0	0	junction_2	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGTGTTTCTGAAAGT	1161	False	NA	NA	False	AGTAAA	-16	NA	139187337	139180821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_139181196_139183113_139183192_139183303_139183441_139183791_139183874_139185508_139185622_139186513_139186617_139186994_139187031_139187105_139187167_139187262
ENSMUSG00000049577.16_0	chr8	+	3399	10	FSM	ENSMUSG00000049577.16	ENSMUST00000054052.15	3390	10	-14	5	-14	-5	multi-exon	FALSE	canonical	3	32	junction_1	9.32274531706801	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTCGCTGGAGGCCCA	NA	False	NA	5	True	AATAAA	-14	NA	123008865	123063985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123009262_123032096_123032220_123034230_123034381_123050438_123050573_123058828_123058929_123060459_123060667_123061190_123061422_123061670_123061767_123061851_123061999_123062170
ENSMUSG00000049577.16_10	chr8	+	1636	1	ISM	ENSMUSG00000049577.16	ENSMUST00000054052.15	3390	10	53470	5	980	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTCGCTGGAGGCCCA	NA	False	NA	5	True	AATAAA	-14	NA	123062349	123063985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123062300_123064000
ENSMUSG00000049577.16_8	chr8	+	2475	5	ISM	ENSMUSG00000049577.16	ENSMUST00000054052.15	3390	10	51601	5	-44	-5	3prime_fragment	FALSE	canonical	3	45	junction_1	7.96868872525461	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTCGCTGGAGGCCCA	NA	False	NA	5	True	AATAAA	-14	NA	123060480	123063985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123060667_123061190_123061422_123061670_123061767_123061851_123061999_123062170
ENSMUSG00000049580.13_0	chr7	-	2535	2	FSM	ENSMUSG00000049580.13	ENSMUST00000206414.2	2310	2	-31	-194	9	-6	multi-exon	FALSE	canonical	3	40	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAACTAGCATTTGCTGA	NA	False	NA	-4	True	AATAAA	-24	NA	98010526	97999880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_98002338_98010448
ENSMUSG00000049580.13_1	chr7	-	1767	1	ISM	ENSMUSG00000049580.13	ENSMUST00000094161.11	2760	4	8848	6	7639	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAACTAGCATTTGCTGA	NA	False	NA	-4	True	AATAAA	-24	NA	98001647	97999880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_97999900_98001600
ENSMUSG00000049580.13_2	chr7	-	2611	3	FSM	ENSMUSG00000049580.13	ENSMUST00000164726.8	2620	3	0	9	0	-9	multi-exon	FALSE	canonical	2	4	junction_2	1.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACTGAACTAGCATTTGC	NA	False	NA	-7	True	AATAAA	-21	NA	98010495	97999883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_98002338_98008564_98008675_98010448
ENSMUSG00000049580.13_4	chr7	-	2638	2	NNC	ENSMUSG00000049580.13	novel	2597	2	NA	NA	37	-9	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACTGAACTAGCATTTGC	NA	False	NA	-7	True	AATAAA	-21	NA	98010458	97999883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_98002338_98010274
ENSMUSG00000049588.14_0	chr11	-	1397	7	FSM	ENSMUSG00000049588.14	ENSMUST00000055040.13	1402	7	2	3	2	-3	multi-exon	FALSE	canonical	0	0	junction_5	2.51661147842358	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTGAGGGTGTATTTCA	4855	False	NA	NA	False	AATAAA	-20	NA	54968931	54940559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_54941385_54941977_54942076_54943173_54943294_54943720_54943823_54945797_54945872_54951286_54951372_54968838
ENSMUSG00000049600.9_1	chr7	-	2203	3	FSM	ENSMUSG00000049600.9	ENSMUST00000051390.9	2171	3	9	-41	1	41	multi-exon	FALSE	canonical	3	66	junction_2	65	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACATGCCTCGTAGGCTT	NA	False	NA	-4	True	AATAAA	-13	NA	12743748	12739596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12740308_12740950_12742257_12743562
ENSMUSG00000049600.9_2	chr7	-	2157	3	FSM	ENSMUSG00000049600.9	ENSMUST00000210282.2	3908	3	-21	1772	1	41	multi-exon	FALSE	canonical	3	10	junction_2	93	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACATGCCTCGTAGGCTT	NA	False	NA	-4	True	AATAAA	-13	NA	12743748	12739596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12740308_12740950_12742257_12743608
ENSMUSG00000049600.9_3	chr7	-	2081	3	NIC	ENSMUSG00000049600.9	novel	2171	3	NA	NA	1	41	combination_of_known_junctions	FALSE	canonical	3	86	junction_2	55	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACATGCCTCGTAGGCTT	NA	False	NA	-4	True	AATAAA	-13	NA	12743756	12739596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_12740308_12740950_12742257_12743692
ENSMUSG00000049600.9_4	chr7	-	2216	3	NNC	ENSMUSG00000049600.9	novel	3908	3	NA	NA	184	41	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	92	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACATGCCTCGTAGGCTT	NA	False	NA	-4	True	AATAAA	-13	NA	12743543	12739596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_12740308_12740950_12742257_12743344
ENSMUSG00000049600.9_5	chr7	-	1529	2	ISM	ENSMUSG00000049600.9	ENSMUST00000051390.9	2171	3	1991	-43	1961	43	3prime_fragment	FALSE	canonical	3	196	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGCCTCGTAGGCTTTC	NA	False	NA	-2	True	AATAAA	-15	NA	12741766	12739594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_12740308_12740950
ENSMUSG00000049604.4_0	chr11	+	1360	2	FSM	ENSMUSG00000049604.4	ENSMUST00000062709.4	2206	2	-9	855	-9	-855	multi-exon	FALSE	canonical	2	9	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACAGTTTCCTCTCAGA	3935	False	NA	NA	False	AATAAA	-18	NA	96085132	96087418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96085873_96086798
ENSMUSG00000049606.17_1	chr5	-	5702	6	NIC	ENSMUSG00000049606.17	novel	5569	7	NA	NA	-12	-6	intron_retention	FALSE	canonical	3	8	junction_5	39.6333193159493	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAATTACAGTGCCTCTA	NA	False	NA	-25	True	AATAAA	-8	NA	106843890	106764615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106786502_106814650_106814712_106843663
ENSMUSG00000049606.17_10	chr5	-	4203	4	ISM	ENSMUSG00000049606.17	ENSMUST00000045466.14	5569	7	58559	1	-13026	0	intron_retention	FALSE	canonical	3	98	junction_3	9.53356643071673	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGCCTCTAATGTGAAA	NA	False	NA	-17	True	AATAAA	-16	NA	106785282	106764607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475
ENSMUSG00000049606.17_13	chr5	-	4978	5	NIC	ENSMUSG00000049606.17	novel	5785	6	NA	NA	11	-5	intron_retention	FALSE	canonical	3	25	junction_4	36.9188298839495	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTACAGTGCCTCTAA	NA	False	NA	-24	True	AATAAA	-9	NA	106844505	106764614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_106766295_106767405_106767509_106783475_106786502_106814650_106814712_106844397
ENSMUSG00000049606.17_3	chr5	-	5589	6	FSM	ENSMUSG00000049606.17	ENSMUST00000112696.8	5785	6	186	10	6	-5	multi-exon	FALSE	canonical	3	25	junction_5	33.3742415644161	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTACAGTGCCTCTAA	NA	False	NA	-24	True	AATAAA	-9	NA	106844510	106764614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106786502_106814650_106814712_106844397
ENSMUSG00000049606.17_4	chr5	-	5553	5	NIC	ENSMUSG00000049606.17	novel	5785	6	NA	NA	-17	-3	intron_retention	FALSE	canonical	3	15	junction_4	41.2492424172857	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTACAGTGCCTCTAATG	NA	False	NA	-22	True	AATAAA	-11	NA	106844533	106764612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106786502_106844397
ENSMUSG00000049606.17_41	chr5	-	3340	3	NIC	ENSMUSG00000049606.17	novel	5785	6	NA	NA	-12776	-5	intron_retention	FALSE	canonical	3	41	junction_2	40	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTACAGTGCCTCTAA	NA	False	NA	-24	True	AATAAA	-9	NA	106785032	106764614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_106766295_106767405_106767509_106783475
ENSMUSG00000049606.17_47	chr5	-	5239	7	NIC	ENSMUSG00000049606.17	novel	5689	7	NA	NA	5	2	intron_retention	FALSE	canonical	3	14	junction_5	38.9333476027371	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACGGTGCAGGTGTCTTG	NA	False	NA	-3	True	AATAAA	-20	NA	106844425	106764936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106786502_106814650_106814712_106843508_106843566_106844397
ENSMUSG00000049624.15_0	chr9	-	3215	11	FSM	ENSMUSG00000049624.15	ENSMUST00000052441.12	3236	11	16	5	2	-5	multi-exon	FALSE	canonical	3	37	junction_3	5.61782876207526	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTATTTTATGTGTATGG	NA	False	NA	-6	True	ATTAAA	-14	NA	78495307	78443774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_78445582_78448180_78448272_78460215_78460364_78464738_78464872_78466292_78466452_78467969_78468089_78478303_78478391_78481931_78482020_78484311_78484546_78485792_78485990_78495155
ENSMUSG00000049624.15_2	chr9	-	1506	1	ISM	ENSMUSG00000049624.15	ENSMUST00000052441.12	3236	11	50048	0	50022	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGTGTTT	NA	False	NA	-1	True	ATTAAA	-19	NA	78445275	78443769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_78443800_78445300
ENSMUSG00000049624.15_6	chr9	-	3151	11	NIC	ENSMUSG00000049624.15	novel	3236	11	NA	NA	75	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	12.983065893694	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGTGTTT	NA	False	NA	-1	True	ATTAAA	-19	NA	78495222	78443769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_78445582_78448180_78448272_78460215_78460364_78464738_78464872_78466292_78466452_78467969_78468089_78478303_78478391_78481931_78482036_78484311_78484546_78485792_78485990_78495155
ENSMUSG00000049625.7_0	chr13	-	2672	3	FSM	ENSMUSG00000049625.7	ENSMUST00000225063.2	2718	3	44	2	-40	-2	multi-exon	FALSE	canonical	1	1	junction_2	2.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGCGTGCCATCAGCTT	NA	False	NA	NA	False	AATAAA	-13	NA	56326654	56322297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_56324447_56324717_56324946_56326359
ENSMUSG00000049643.16_1	chr7	+	2639	10	FSM	ENSMUSG00000049643.16	ENSMUST00000067386.14	2701	10	57	5	4	0	multi-exon	FALSE	canonical	3	300	junction_8	25.2899238218224	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATGTTTTGTGTCTGTG	453	False	NA	NA	False	AATAAA	-15	NA	27252714	27281519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761
ENSMUSG00000049643.16_33	chr7	+	2053	4	FSM	ENSMUSG00000049643.16	ENSMUST00000186501.2	340	4	-39	-1674	-39	0	multi-exon	FALSE	canonical	3	27	junction_1	145.525102836437	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATGTTTTGTGTCTGTG	7095	False	NA	NA	False	AATAAA	-15	NA	27273852	27281519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27273927_27274015_27274166_27278137_27278209_27279761
ENSMUSG00000049643.16_36	chr7	+	1430	1	ISM	ENSMUSG00000049643.16	ENSMUST00000067386.14	2701	10	27432	5	6198	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATGTTTTGTGTCTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	27280089	27281519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27280100_27281500
ENSMUSG00000049643.16_5	chr7	+	2696	10	NIC	ENSMUSG00000049643.16	novel	2701	10	NA	NA	-6	0	intron_retention	FALSE	canonical	3	32	junction_7	97.9850076715569	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATGTTTTGTGTCTGTG	443	False	NA	NA	False	AATAAA	-15	NA	27252704	27281519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271174_27274015_27274166_27278137_27278209_27279761
ENSMUSG00000049657.10_0	chr4	-	3052	1	ISM	ENSMUSG00000049657.10	ENSMUST00000055028.9	4316	2	18098	3	17849	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACACGGTCTCCTTTGC	NA	False	NA	-3	True	ATTAAA	-23	NA	44994296	44991244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_44991200_44994300
ENSMUSG00000049657.10_1	chr4	-	4314	2	FSM	ENSMUSG00000049657.10	ENSMUST00000055028.9	4316	2	-3	5	-3	-2	multi-exon	FALSE	canonical	3	11	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAACACACGGTCTCCTTT	NA	False	NA	-5	True	ATTAAA	-21	NA	45012397	44991246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_44995387_45012223
ENSMUSG00000049657.10_2	chr4	-	5318	2	FSM	ENSMUSG00000049657.10	ENSMUST00000107817.3	3867	2	284	-1735	17	-1	multi-exon	FALSE	canonical	3	12	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACACACGGTCTCCTTTG	-2	True	NA	-4	True	ATTAAA	-22	NA	45012128	44991245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_44995387_45010951
ENSMUSG00000049657.10_3	chr4	-	4419	2	FSM	ENSMUSG00000049657.10	ENSMUST00000180217.2	4708	2	289	0	22	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACACGGTCTCCTTTGC	3	True	NA	-3	True	ATTAAA	-23	NA	45012123	44991244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_44995387_45011846
ENSMUSG00000049657.10_5	chr4	-	5187	1	NIC	ENSMUSG00000049657.10	novel	4708	2	NA	NA	21	-12124	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCCTTGGTCATGGTGT	2	True	NA	NA	False	NA	NA	NA	45012124	45006937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_45006900_45012100
ENSMUSG00000049658.14_0	chr13	-	2351	1	ISM	ENSMUSG00000049658.14	ENSMUST00000038104.12	9921	39	83723	3	26480	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTTGTTTTGTCCTTTTC	NA	False	NA	-3	True	AATAAA	-15	NA	100156855	100154504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_100154500_100156900
ENSMUSG00000049658.14_2	chr13	-	9898	39	FSM	ENSMUSG00000049658.14	ENSMUST00000038104.12	9921	39	15	8	15	-6	multi-exon	FALSE	canonical	3	16	junction_24	12.2627061132051	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCATTCTTGTTTTGTCC	6774	False	NA	-8	True	AATAAA	-10	NA	100240563	100154509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100156919_100160107_100160364_100161904_100162164_100163942_100163980_100167292_100167498_100171591_100171779_100172286_100172348_100174267_100174446_100174629_100174781_100177929_100178091_100178567_100178794_100180266_100180360_100180779_100180817_100183233_100183348_100186143_100186538_100187452_100187638_100187855_100188064_100189480_100189627_100191603_100191812_100192666_100192849_100195233_100195454_100195996_100196179_100196801_100198015_100200866_100200998_100202384_100202575_100203972_100204065_100206584_100206745_100210894_100211054_100212012_100212152_100214339_100214622_100215166_100215308_100220648_100220704_100225860_100225956_100228701_100228836_100229921_100230054_100234045_100234106_100234993_100235104_100235460_100235738_100240134
ENSMUSG00000049658.14_22	chr13	-	4354	14	ISM	ENSMUSG00000049658.14	ENSMUST00000099262.10	5352	20	9399	1	13	-1	3prime_fragment	FALSE	canonical	3	31	junction_3	10.2368403039358	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTTGTTTTGTCCTTTTC	NA	False	NA	-3	True	AATAAA	-15	NA	100183322	100154504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_100156919_100160107_100160364_100161904_100162164_100163942_100163980_100167292_100167498_100171591_100171779_100172286_100172348_100174267_100174446_100174629_100174781_100177929_100178091_100178567_100178794_100180266_100180360_100180779_100180817_100183233
ENSMUSG00000049658.14_31	chr13	-	3657	9	ISM	ENSMUSG00000049658.14	ENSMUST00000099262.10	5352	20	18027	6	8641	-6	3prime_fragment	FALSE	canonical	3	31	junction_3	10.1980390271856	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCATTCTTGTTTTGTCC	NA	False	NA	-8	True	AATAAA	-10	NA	100174694	100154509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_100156919_100160107_100160364_100161904_100162164_100163942_100163980_100167292_100167498_100171591_100171779_100172286_100172348_100174267_100174446_100174629
ENSMUSG00000049658.14_54	chr13	-	9909	39	NIC	ENSMUSG00000049658.14	novel	9921	39	NA	NA	3	-4	combination_of_known_junctions	FALSE	canonical	3	4	junction_35	12.9703742975399	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTCTTGTTTTGTCCTT	6762	False	NA	-6	True	AATAAA	-12	NA	100240575	100154507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_100156919_100160107_100160364_100161904_100162164_100163942_100163980_100167292_100167498_100171591_100171779_100172286_100172348_100174267_100174446_100174629_100174781_100177929_100178091_100178567_100178794_100180266_100180360_100180779_100180817_100183233_100183348_100186143_100186538_100187452_100187638_100187855_100188064_100189480_100189627_100191603_100191812_100192666_100192849_100195233_100195454_100195996_100196179_100196801_100198015_100200866_100200998_100202384_100202575_100203972_100204065_100206584_100206745_100210894_100211054_100212012_100212152_100214339_100214622_100215166_100215308_100220648_100220704_100225860_100225956_100228701_100228836_100229921_100230051_100234045_100234106_100234993_100235104_100235460_100235738_100240134
ENSMUSG00000049659.16_0	chr11	-	2850	8	ISM	ENSMUSG00000049659.16	ENSMUST00000035350.12	3998	9	14806	8	359	-8	3prime_fragment	FALSE	canonical	3	125	junction_7	12.8714206437267	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAATTTAGCCTTTTG	NA	False	NA	NA	False	AATAAA	-8	NA	20676783	20635091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_20636199_20642464_20642589_20648312_20648374_20653710_20653834_20658680_20658738_20659619_20659747_20662163_20662316_20675684
ENSMUSG00000049659.16_1	chr11	-	3930	9	FSM	ENSMUSG00000049659.16	ENSMUST00000035350.12	3998	9	60	8	60	-8	multi-exon	FALSE	canonical	3	125	junction_7	17.066048165876	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAATTTAGCCTTTTG	9320	False	NA	NA	False	AATAAA	-8	NA	20691529	20635091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_20636199_20642464_20642589_20648312_20648374_20653710_20653834_20658680_20658738_20659619_20659747_20662163_20662316_20675684_20677640_20691305
ENSMUSG00000049659.16_23	chr11	-	4980	7	ISM	ENSMUSG00000049659.16	ENSMUST00000177543.8	3082	8	-61	10277	-61	-6	5prime_fragment	FALSE	canonical	3	125	junction_5	19.2757763930679	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGGCATTTTAATGTTT	9333	False	NA	NA	False	AATAAA	-12	NA	20691516	20646018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_20648374_20653710_20653834_20658680_20658738_20659619_20659747_20662163_20662316_20675684_20677640_20691305
ENSMUSG00000049670.10_0	chr19	-	1894	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_4	36.2745089560148	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGTGTTATGAACT	4142	False	NA	-5	True	AATAAA	-19	NA	42074794	42063382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067117_42067216_42074635
ENSMUSG00000049670.10_1	chr19	-	1792	5	FSM	ENSMUSG00000049670.10	ENSMUST00000051772.10	1800	5	6	2	6	-2	multi-exon	FALSE	canonical	2	63	junction_4	19.0574788468989	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGTGTTATGAACT	4146	False	NA	-5	True	AATAAA	-19	NA	42074790	42063382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42074635
ENSMUSG00000049670.10_2	chr19	-	1902	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_4	34.0258725090188	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGTGTTATGAACT	4151	False	NA	-5	True	AATAAA	-19	NA	42074785	42063382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067100_42067216_42074635
ENSMUSG00000049672.16_0	chr17	+	3550	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112674.8	3743	3	-21	214	-21	-214	multi-exon	FALSE	canonical	3	85	junction_1	58	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACACTCCTCTTGTTCTTG	NA	False	NA	NA	False	TATAAA	-8	NA	69690023	69697531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_69690265_69692415_69692500_69694306
ENSMUSG00000049672.16_1	chr17	+	3363	3	FSM	ENSMUSG00000049672.16	ENSMUST00000062369.14	3625	3	48	214	48	-214	multi-exon	FALSE	canonical	3	64	junction_1	68.5	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACACTCCTCTTGTTCTTG	NA	False	NA	NA	False	TATAAA	-8	NA	69690361	69697531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_69690416_69692415_69692500_69694306
ENSMUSG00000049672.16_2	chr17	+	3745	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112676.4	4358	3	-50	663	-50	-214	multi-exon	FALSE	canonical	3	41	junction_1	80	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACACTCCTCTTGTTCTTG	NA	False	NA	NA	False	TATAAA	-8	NA	69690784	69697531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_69691221_69692415_69692500_69694306
ENSMUSG00000049672.16_5	chr17	+	2529	1	ISM	ENSMUSG00000049672.16	ENSMUST00000112674.8	3743	3	4962	210	4172	-210	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTCTTGTTCTTGATCA	NA	False	NA	NA	False	TATAAA	-12	NA	69695006	69697535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_69695000_69697500
ENSMUSG00000049680.18_11	chr11	-	3653	6	FSM	ENSMUSG00000049680.18	ENSMUST00000120306.8	3972	6	301	18	301	-2	multi-exon	FALSE	canonical	2	4	junction_5	21.2414688757628	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAATGAGTTGAATGTAT	NA	False	NA	-8	True	NA	NA	NA	5712070	5664988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5668264_5672801_5672841_5673110_5673162_5676347_5676419_5676830_5676858_5711880
ENSMUSG00000049680.18_2	chr11	-	3526	6	FSM	ENSMUSG00000049680.18	ENSMUST00000093362.12	5089	6	-9	1572	-9	-2	multi-exon	FALSE	canonical	3	47	junction_5	4.96386945839634	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAATGAGTTGAATGTAT	8838	False	NA	-8	True	NA	NA	NA	5691159	5664988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5668264_5672801_5672841_5673110_5673162_5676347_5676419_5676830_5676858_5691096
ENSMUSG00000049680.18_3	chr11	-	2043	1	ISM	ENSMUSG00000049680.18	ENSMUST00000093362.12	5089	6	24123	1568	24119	2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGTTGAATGTATACTC	NA	False	NA	-4	True	NA	NA	NA	5667027	5664984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5665000_5667000
ENSMUSG00000049686.15_0	chr5	+	1615	2	FSM	ENSMUSG00000049686.15	ENSMUST00000121652.8	1875	2	-34	294	-34	6	multi-exon	FALSE	canonical	3	186	junction_1	0	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACCTCTTCCTCATGTCT	4840	False	NA	2	True	NA	NA	NA	123153102	123168225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_123153630_123167137
ENSMUSG00000049687.6_0	chr15	+	2748	2	FSM	ENSMUSG00000049687.6	ENSMUST00000050349.3	2745	2	31	-34	31	1	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATATATATATATAAATT	NA	False	NA	NA	False	NA	NA	NA	82225410	82229945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82225473_82227259
ENSMUSG00000049717.10_0	chr8	-	1960	1	ISM	ENSMUSG00000049717.10	ENSMUST00000095476.6	5028	2	4318	973	4318	855	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCAACTTTATGTTCCT	NA	False	NA	-6	True	NA	NA	NA	10021981	10020021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_10020000_10022000
ENSMUSG00000049717.10_1	chr8	-	4069	2	FSM	ENSMUSG00000049717.10	ENSMUST00000095476.6	5028	2	-19	978	-19	850	multi-exon	FALSE	canonical	2	7	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAATACCAACTTTATG	NA	False	NA	-11	True	NA	NA	NA	10026318	10020026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_10023808_10026030
ENSMUSG00000049719.15_0	chr9	+	1708	8	Fusion	ENSMUSG00000047257.14_ENSMUSG00000049719.15	novel	1232	6	NA	NA	14	-2	multi-exon	TRUE	canonical	0	0	junction_4	0.989743318610787	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGCTGTGCCTTCTCTGA	1978	False	NA	NA	False	CATAAA	-14	NA	110663669	110685582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr9_+_110663808_110665133_110665161_110667488_110667637_110668089_110668365_110678694_110678873_110679063_110679327_110680382_110680547_110685067
ENSMUSG00000049721.15_0	chr11	+	1887	4	FSM	ENSMUSG00000049721.15	ENSMUST00000063004.14	1879	4	-11	3	-11	-3	multi-exon	FALSE	canonical	0	0	junction_1	5.18544972870135	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTATGTGTGTGTGTG	8661	False	NA	NA	False	AGTAAA	-2	NA	3933701	3949312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3933841_3934940_3935159_3946908_3947052_3947925
ENSMUSG00000049721.15_2	chr11	+	1563	3	NNC	ENSMUSG00000049721.15	novel	1749	3	NA	NA	2579	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	4	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAATTTTATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	3942511	3949308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_3942549_3946908_3947052_3947925
ENSMUSG00000049728.15_0	chr7	-	2139	3	FSM	ENSMUSG00000049728.15	ENSMUST00000054415.12	5768	3	681	2948	-13	-2	multi-exon	FALSE	canonical	3	42	junction_2	4	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGTCTTCTGTATTGTG	NA	False	NA	0	True	ATTAAA	-18	NA	127475319	127465166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127466536_127466927_127467597_127475218
ENSMUSG00000049728.15_2	chr7	-	3003	4	FSM	ENSMUSG00000049728.15	ENSMUST00000106263.8	3132	4	189	-60	186	60	multi-exon	FALSE	canonical	0	0	junction_3	22.8958996814325	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAACAAACCTATGTGGC	NA	False	NA	NA	False	ACTAAA	-27	NA	127475763	127464828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127466536_127466927_127467597_127473848_127473931_127475218
ENSMUSG00000049728.15_5	chr7	-	1515	1	NIC	ENSMUSG00000049728.15	novel	5768	3	NA	NA	8135	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGCTGTCTTCTGTATTG	4197	False	NA	-2	True	ATTAAA	-16	NA	127466683	127465168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127465200_127466700
ENSMUSG00000049734.10_0	chr9	-	1074	2	FSM	ENSMUSG00000049734.10	ENSMUST00000061973.5	1084	2	11	-1	11	1	multi-exon	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGCCGCCTCTGCTTCT	NA	False	NA	2	True	AATAAA	-19	NA	108888791	108886999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108887997_108888714
ENSMUSG00000049739.11_0	chr7	+	7804	3	FSM	ENSMUSG00000049739.11	ENSMUST00000050383.8	6310	3	-1501	7	-21	-3	multi-exon	FALSE	canonical	3	99	junction_1	27	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAACAGCTACTGGTGTGG	162	False	NA	13	True	AAAACA	-12	NA	127475371	127485161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127477280_127477741_127483091_127484614
ENSMUSG00000049739.11_2	chr7	+	6178	3	NIC	ENSMUSG00000049739.11	novel	2241	3	NA	NA	135	-3	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	73	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAACAGCTACTGGTGTGG	893	False	NA	13	True	AAAACA	-12	NA	127476102	127485161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127476385_127477741_127483091_127484614
ENSMUSG00000049739.11_3	chr7	+	6383	4	NIC	ENSMUSG00000049739.11	novel	6310	3	NA	NA	135	-3	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	56.7802782663136	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAACAGCTACTGGTGTGG	893	False	NA	13	True	AAAACA	-12	NA	127476102	127485161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127476385_127477074_127477280_127477741_127483091_127484614
ENSMUSG00000049739.11_4	chr7	+	3624	2	ISM	ENSMUSG00000049739.11	ENSMUST00000050383.8	6310	3	3141	7	1531	-3	3prime_fragment	FALSE	canonical	3	153	junction_1	0	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAACAGCTACTGGTGTGG	155	False	NA	13	True	AAAACA	-12	NA	127480013	127485161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127483091_127484614
ENSMUSG00000049739.11_5	chr7	+	6316	4	NNC	ENSMUSG00000049739.11	novel	6310	3	NA	NA	145	-3	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	55.0474542755814	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAACAGCTACTGGTGTGG	903	False	NA	13	True	AAAACA	-12	NA	127476112	127485161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_127476385_127477131_127477280_127477741_127483091_127484614
ENSMUSG00000049751.7_0	chr12	-	476	2	FSM	ENSMUSG00000049751.7	ENSMUST00000054544.7	526	2	51	-1	-19	1	multi-exon	FALSE	canonical	3	5332	junction_1	0	1040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAAGCCTTGTGTTTTGA	NA	False	NA	-7	True	AATAAA	-15	NA	69230806	69229513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_69229940_69230756
ENSMUSG00000049751.7_1	chr12	-	353	1	FSM	ENSMUSG00000049751.7	ENSMUST00000110619.2	1276	1	922	1	895	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAGCCTTGTGTTTTGAT	NA	False	NA	-6	True	AATAAA	-16	NA	69229865	69229512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_69229500_69229900
ENSMUSG00000049755.15_1	chr11	-	418	3	FSM	ENSMUSG00000049755.15	ENSMUST00000135097.8	426	3	-26	34	6	0	multi-exon	FALSE	canonical	3	24	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAGTAAAGTATTCAA	621	False	NA	NA	False	AATAAA	-16	NA	58214166	58210563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_58210781_58213425_58213556_58214095
ENSMUSG00000049755.15_4	chr11	-	4028	1	FSM	ENSMUSG00000049755.15	ENSMUST00000185661.2	3125	1	1	-904	1	904	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAACCAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58221164	58217136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_58217100_58221200
ENSMUSG00000049760.7_0	chr17	-	515	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	70	170	-19	-2	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGCCGGTTTTCTGGTG	NA	False	NA	-27	True	AATAAA	-16	NA	56916701	56914621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
ENSMUSG00000049760.7_1	chr17	-	453	3	ISM	ENSMUSG00000049760.7	ENSMUST00000233103.2	497	4	173	4	-23	-4	3prime_fragment	FALSE	canonical	3	2068	junction_2	27	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCCAGCCGGTTTTCTGG	NA	False	NA	-29	True	AATAAA	-14	NA	56916025	56914623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56914842_56915637_56915693_56915845
ENSMUSG00000049764.9_13	chr10	+	4987	2	NIC	ENSMUSG00000049764.9	novel	378	3	NA	NA	20	-416	intron_retention	FALSE	canonical	3	22	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTTCTGTCTTTTTT	NA	False	NA	13	True	AATAAA	-15	NA	75868507	75878652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_75868910_75874067
ENSMUSG00000049764.9_29	chr10	+	3060	1	ISM	ENSMUSG00000049764.9	ENSMUST00000061617.7	5097	2	7105	416	7105	-416	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTTCTGTCTTTTTT	NA	False	NA	13	True	AATAAA	-15	NA	75875592	75878652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_75875600_75878700
ENSMUSG00000049764.9_4	chr10	+	5068	3	NNC	ENSMUSG00000049764.9	novel	5097	2	NA	NA	0	-416	intron_retention	FALSE	non_canonical	0	0	junction_1	75	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTTCTGTCTTTTTT	NA	False	NA	13	True	AATAAA	-15	NA	75868487	75878652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_75868910_75869447_75869509_75874067
ENSMUSG00000049764.9_5	chr10	+	4687	2	FSM	ENSMUSG00000049764.9	ENSMUST00000061617.7	5097	2	-6	416	-2	-416	multi-exon	FALSE	canonical	3	112	junction_1	0	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTTCTGTCTTTTTT	NA	False	NA	13	True	AATAAA	-15	NA	75868481	75878652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_75868584_75874067
ENSMUSG00000049764.9_6	chr10	+	4749	3	NNC	ENSMUSG00000049764.9	novel	5097	2	NA	NA	-3	-416	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75	136	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTTCTGTCTTTTTT	NA	False	NA	13	True	AATAAA	-15	NA	75868480	75878652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_75868584_75869447_75869509_75874067
ENSMUSG00000049764.9_9	chr10	+	4868	4	NNC	ENSMUSG00000049764.9	novel	378	3	NA	NA	1	-416	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	64.8074069840786	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTTCTGTCTTTTTT	NA	False	NA	13	True	AATAAA	-15	NA	75868484	75878652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_75868584_75868786_75868910_75869447_75869509_75874067
ENSMUSG00000049775.17_0	chrX	-	613	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112172.4	768	3	154	1	-12	-1	multi-exon	FALSE	canonical	3	1191	junction_1	25.5	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGTGTGTCTGCTTGGTG	NA	False	NA	-1	True	AATAAA	-14	NA	165992157	165990089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_165990532_165990932_165991048_165992101
ENSMUSG00000049791.5_0	chr7	+	2968	2	FSM	ENSMUSG00000049791.5	ENSMUST00000058755.5	6720	2	20	3732	20	-3732	multi-exon	FALSE	canonical	3	13	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAGTATACTCAATTGAC	NA	False	NA	NA	False	ATTAAA	-20	NA	89053582	89058610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_89054180_89056239
ENSMUSG00000049791.5_1	chr7	+	3912	1	ISM	ENSMUSG00000049791.5	ENSMUST00000058755.5	6720	2	4862	6	4862	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAACTGGTGTGTGCATTG	NA	False	NA	NA	False	AATAAA	-10	NA	89058424	89062336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_89058400_89062300
ENSMUSG00000049792.7_1	chr12	-	2054	2	FSM	ENSMUSG00000049792.7	ENSMUST00000160576.2	1852	2	-139	-63	-113	63	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAATGTGTGGTTTGTGT	NA	False	NA	-4	True	NA	NA	NA	111679500	111676274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_111677847_111679018
ENSMUSG00000049792.7_2	chr12	-	1724	2	FSM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	64	351	64	65	multi-exon	FALSE	canonical	3	159	junction_1	0	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATGTGTGGTTTGTGTTT	NA	False	NA	-2	True	NA	NA	NA	111679627	111676272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_111677847_111679477
ENSMUSG00000049792.7_3	chr12	-	1888	1	ISM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	1873	9	1543	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAAAATCTGTCCCCCT	NA	False	NA	NA	False	CATAAA	-11	NA	111677818	111675930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_111675900_111677800
ENSMUSG00000049800.14_0	chr11	+	1805	2	FSM	ENSMUSG00000049800.14	ENSMUST00000093292.11	5647	2	-69	3911	12	45	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAGAATATA	NA	False	NA	9	True	NA	NA	NA	20493264	20599110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_20493761_20597801
ENSMUSG00000049800.14_1	chr11	+	2012	3	NIC	ENSMUSG00000049800.14	novel	639	3	NA	NA	-116	39	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAGGTAAAAAAAAAAAAG	NA	False	NA	3	True	NA	NA	NA	20493136	20599104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_20493761_20545129_20545215_20597801
ENSMUSG00000049800.14_2	chr11	+	2455	2	FSM	ENSMUSG00000049800.14	ENSMUST00000109586.3	5515	2	13	3047	13	909	multi-exon	FALSE	canonical	3	14	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCCCAGTCTTTGTCTT	NA	False	NA	NA	False	TTTAAA	-12	NA	20581991	20599974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_20582274_20597801
ENSMUSG00000049800.14_3	chr11	+	1884	1	ISM	ENSMUSG00000049800.14	ENSMUST00000093292.11	5647	2	107793	11	3972	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGATGAAACATGCTCAC	7084	False	NA	6	True	AATAAA	-6	NA	20601126	20603010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_20601100_20603000
ENSMUSG00000049804.10_0	chrX	+	7968	6	FSM	ENSMUSG00000049804.10	ENSMUST00000124226.3	7996	6	17	11	17	-11	multi-exon	FALSE	canonical	2	4	junction_2	2.44948974278318	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAGCAAAAGAAGAGATA	NA	False	NA	NA	False	AATAAA	-13	NA	133587284	133597495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_133587387_133587896_133587975_133588765_133588856_133589198_133589282_133589568_133589654_133589965
ENSMUSG00000049804.10_3	chrX	+	3423	1	ISM	ENSMUSG00000049804.10	ENSMUST00000124226.3	7996	6	6805	11	6805	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAGCAAAAGAAGAGATA	NA	False	NA	NA	False	AATAAA	-13	NA	133594072	133597495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_133594100_133597500
ENSMUSG00000049807.17_0	chr11	+	5810	24	NNC	ENSMUSG00000049807.17	novel	4531	19	NA	NA	-11137	-2	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	10.5499083933345	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAACCAGTGTCTCGCTT	NA	False	NA	8	True	AATAAA	-15	NA	97295221	97393222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_97295357_97335009_97335172_97337334_97337378_97338995_97339092_97339270_97339350_97339478_97339534_97342217_97343371_97344690_97344847_97345039_97345152_97345271_97345330_97347280_97347425_97354209_97354528_97355620_97355683_97355884_97356016_97356835_97356958_97357257_97357414_97361193_97361273_97365840_97365915_97366149_97366240_97366873_97367000_97380897_97380940_97381959_97382057_97383876_97383909_97390934
ENSMUSG00000049807.17_26	chr11	+	4484	18	ISM	ENSMUSG00000049807.17	ENSMUST00000107601.8	5450	19	1989	3	19	-1	3prime_fragment	FALSE	canonical	3	33	junction_2	9.79266019892584	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACCAGTGTCTCGCTTG	NA	False	NA	9	True	AATAAA	-16	NA	97342974	97393223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97343371_97344690_97344847_97345039_97345152_97345271_97345330_97347280_97347425_97354209_97354528_97355620_97355683_97355884_97356016_97356835_97356958_97357257_97357414_97361193_97361273_97365840_97365915_97366149_97366240_97366873_97367000_97380897_97380940_97381959_97382057_97383876_97383909_97390934
ENSMUSG00000049807.17_34	chr11	+	1410	1	ISM	ENSMUSG00000049807.17	ENSMUST00000121799.8	5816	24	85455	5	9844	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACCAGTGTCTCGCTTG	NA	False	NA	9	True	AATAAA	-16	NA	97391813	97393223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97391800_97393200
ENSMUSG00000049807.17_9	chr11	+	5781	24	FSM	ENSMUSG00000049807.17	ENSMUST00000121799.8	5816	24	30	5	30	-1	multi-exon	FALSE	canonical	3	16	junction_1	11.2785659172316	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACCAGTGTCTCGCTTG	NA	False	NA	9	True	AATAAA	-16	NA	97306388	97393223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_97306494_97335009_97335172_97337334_97337378_97338995_97339092_97339270_97339350_97339478_97339534_97342217_97343371_97344690_97344847_97345039_97345152_97345271_97345330_97347280_97347425_97354209_97354528_97355620_97355683_97355884_97356016_97356835_97356958_97357257_97357414_97361193_97361273_97365840_97365915_97366149_97366240_97366873_97367000_97380897_97380940_97381959_97382057_97383876_97383909_97390934
ENSMUSG00000049811.18_12	chr11	+	1100	3	FSM	ENSMUSG00000049811.18	ENSMUST00000151877.2	1047	3	-53	0	33	0	multi-exon	FALSE	canonical	3	12	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACCTCAAGACATTCCT	NA	False	NA	8	True	AATAAA	-19	NA	22970502	22973730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_22971134_22971493_22971662_22973429
ENSMUSG00000049811.18_19	chr11	+	1928	5	NIC	ENSMUSG00000049811.18	novel	1947	5	NA	NA	61	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	2.95803989154981	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCATGTACCTCAAGAC	NA	False	NA	2	True	AATAAA	-13	NA	22958525	22973724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_22958627_22965654_22965885_22969999_22971134_22971493_22971662_22973429
ENSMUSG00000049811.18_3	chr11	+	2113	6	NIC	ENSMUSG00000049811.18	novel	1947	5	NA	NA	-15	0	combination_of_known_junctions	TRUE	canonical	1	1	junction_1	6.81175454637056	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCATGTACCTCAAGAC	NA	False	NA	2	True	AATAAA	-13	NA	22958449	22973724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_22958627_22963538_22963648_22965654_22965885_22969999_22971134_22971493_22971662_22973429
ENSMUSG00000049811.18_8	chr11	+	3675	4	NIC	ENSMUSG00000049811.18	novel	1947	5	NA	NA	79	-3	intron_retention	FALSE	canonical	3	14	junction_1	2.49443825784929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAACCCCATGTACCTCAA	NA	False	NA	-1	True	AATAAA	-10	NA	22958543	22973721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_22958627_22965654_22965885_22969999_22971134_22971493
ENSMUSG00000049832.7_0	chr17	-	443	1	FSM	ENSMUSG00000049832.7	ENSMUST00000173786.2	327	1	-10	-106	-10	106	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGGTGTTCCCGCAGCCA	5643	False	NA	NA	False	NA	NA	NA	36246852	36246409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36246400_36246900
ENSMUSG00000049848.8_0	chr7	-	2256	7	FSM	ENSMUSG00000049848.8	ENSMUST00000052605.8	3361	7	15	1090	15	-1090	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTTTTAAAAGTTCTT	7528	False	NA	NA	False	AATAAA	-14	NA	19621875	19610756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19612106_19612753_19612817_19615738_19615825_19616499_19616547_19616726_19616872_19620208_19620578_19621678
ENSMUSG00000049858.9_0	chr10	-	2307	4	FSM	ENSMUSG00000049858.9	ENSMUST00000054764.9	2497	4	189	1	189	-1	multi-exon	FALSE	canonical	3	11	junction_3	1.88561808316413	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTGGAATCTCTTGGGC	8781	False	NA	-8	True	AATAAA	-17	NA	128509753	128505763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128507796_128507972_128508151_128508407_128508472_128509720
ENSMUSG00000049858.9_1	chr10	-	802	1	ISM	ENSMUSG00000049858.9	ENSMUST00000054764.9	2497	4	3377	1	3377	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTGGAATCTCTTGGGC	NA	False	NA	-8	True	AATAAA	-17	NA	128506565	128505763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128505800_128506600
ENSMUSG00000049866.13_0	chr1	-	3937	1	FSM	ENSMUSG00000049866.13	ENSMUST00000159814.2	3997	1	51	9	51	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATCAAACAGTTGGAGGC	NA	False	NA	NA	False	AATAAA	-9	NA	88629892	88625955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_88626000_88629900
ENSMUSG00000049871.15_9	chr16	-	3187	15	FSM	ENSMUSG00000049871.15	ENSMUST00000180200.8	3842	15	52	603	52	0	multi-exon	FALSE	canonical	0	0	junction_2	2.66209216479775	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATGAGTATGCAGG	NA	False	NA	NA	False	NA	NA	NA	3794357	3763473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_3765404_3765689_3765774_3766123_3766208_3766767_3766852_3767233_3767318_3770250_3770335_3770726_3770811_3771291_3771376_3771795_3771880_3772419_3772504_3773008_3773093_3775132_3775217_3776793_3776878_3777254_3777339_3794192
ENSMUSG00000049872.9_0	chr10	-	1705	2	FSM	ENSMUSG00000049872.9	ENSMUST00000069125.8	5323	2	8	3610	8	-3610	multi-exon	FALSE	canonical	3	31	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAAATCCATTTTTTC	NA	False	NA	NA	False	NA	NA	NA	33972507	33967420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_33968512_33971893
ENSMUSG00000049878.14_0	chr4	-	6236	8	FSM	ENSMUSG00000049878.14	ENSMUST00000056635.13	6242	8	1	5	1	-5	multi-exon	FALSE	canonical	3	142	junction_1	23.3290569453457	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCACTTGTTTACTCATAG	6465	False	NA	-6	True	AATAAA	-13	NA	121072280	121003084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_121008220_121012052_121012195_121016388_121016526_121027814_121028018_121039802_121039936_121045411_121045494_121047300_121047456_121072031
ENSMUSG00000049878.14_1	chr4	-	2676	1	ISM	ENSMUSG00000049878.14	ENSMUST00000168615.8	6585	6	39971	515	39971	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCACTTGTTTACTCATAG	8869	False	NA	-6	True	AATAAA	-13	NA	121005760	121003084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_121003100_121005800
ENSMUSG00000049878.14_16	chr4	-	3274	7	ISM	ENSMUSG00000049878.14	ENSMUST00000056635.13	6242	8	1	6800	1	-6800	5prime_fragment	FALSE	canonical	3	168	junction_3	17.3557547292598	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6465	False	NA	NA	False	NA	NA	NA	121072280	121009879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_121012195_121016388_121016526_121027814_121028018_121039802_121039936_121045411_121045494_121047300_121047456_121072031
ENSMUSG00000049881.14_0	chr1	+	789	3	FSM	ENSMUSG00000049881.14	ENSMUST00000061537.12	1194	3	402	3	114	0	multi-exon	FALSE	canonical	3	989	junction_1	26.5	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTGCTGGCCCAGTGTC	NA	False	NA	32	True	AATAAA	-45	NA	157240323	157247803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_157240696_157241313_157241366_157247438
ENSMUSG00000049881.14_1	chr1	+	1396	2	NIC	ENSMUSG00000049881.14	novel	539	4	NA	NA	125	0	intron_retention	FALSE	canonical	3	1042	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTGCTGGCCCAGTGTC	NA	False	NA	32	True	AATAAA	-45	NA	157240334	157247803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_157241366_157247438
ENSMUSG00000049881.14_7	chr1	+	208	1	FSM	ENSMUSG00000049881.14	ENSMUST00000189791.2	251	1	124	-81	124	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTGCTGGCCCAGTGTC	NA	False	NA	32	True	AATAAA	-45	NA	157247595	157247803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_157247600_157247800
ENSMUSG00000049882.11_0	chr12	-	978	6	NIC	ENSMUSG00000049882.11	novel	1018	6	NA	NA	10	-10	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	70.332353863638	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCCTCAAGTCTGAAGCA	NA	False	NA	-15	True	AATAAA	-14	NA	69629779	69624411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629304_69629400_69629494
ENSMUSG00000049882.11_1	chr12	-	988	6	FSM	ENSMUSG00000049882.11	ENSMUST00000238784.2	875	6	106	-219	11	-4	multi-exon	FALSE	canonical	3	55	junction_4	48.4710222710435	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTCTGAAGCAGCATGG	NA	False	NA	-9	True	AATAAA	-20	NA	69629778	69624405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629304_69629405_69629494
ENSMUSG00000049882.11_18	chr12	-	1900	5	ISM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	102	1072	7	-849	5prime_fragment	FALSE	canonical	3	142	junction_3	19.0656759649376	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCACATGTCTCGGTTT	NA	False	NA	NA	False	CATAAA	-11	NA	69629782	69625473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
ENSMUSG00000049882.11_4	chr12	-	1005	6	FSM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	96	8	1	-8	multi-exon	FALSE	canonical	3	127	junction_1	23.3837550449024	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTCAAGTCTGAAGCAGC	NA	False	NA	-13	True	AATAAA	-16	NA	69629788	69624409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
ENSMUSG00000049882.11_5	chr12	-	1876	5	ISM	ENSMUSG00000049882.11	ENSMUST00000238784.2	875	6	116	848	21	-848	5prime_fragment	FALSE	canonical	3	55	junction_3	53.5741308842243	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCACATGTCTCGGTTTT	NA	False	NA	NA	False	CATAAA	-12	NA	69629768	69625472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_69626785_69627891_69628012_69629049_69629120_69629304_69629405_69629494
ENSMUSG00000049882.11_8	chr12	-	1071	6	NIC	ENSMUSG00000049882.11	novel	1109	6	NA	NA	7	-8	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	61.6071424430642	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTCAAGTCTGAAGCAGC	NA	False	NA	-13	True	AATAAA	-16	NA	69629782	69624409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_69624715_69626607_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
ENSMUSG00000049892.8_0	chr11	-	1606	2	FSM	ENSMUSG00000049892.8	ENSMUST00000062405.8	1611	2	1	4	1	-4	multi-exon	FALSE	canonical	3	6	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGTGCTTTGCTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	59855769	59854010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59855193_59855345
ENSMUSG00000049904.8_0	chr11	+	1184	4	NNC	ENSMUSG00000049904.8	novel	1568	4	NA	NA	172	-4	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	27.8846831711525	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCATGCTTATCTGTGTA	NA	False	NA	3	True	ATTAAA	-12	NA	22462259	22469230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_22462376_22467187_22467292_22467407_22467522_22468380
ENSMUSG00000049904.8_1	chr11	+	1205	4	FSM	ENSMUSG00000049904.8	ENSMUST00000059319.8	1568	4	357	6	357	-6	multi-exon	FALSE	canonical	3	52	junction_3	9.0921211313239	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTCATGCTTATCTGTG	NA	False	NA	1	True	ATTAAA	-10	NA	22462444	22469228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_22462584_22467187_22467292_22467407_22467522_22468380
ENSMUSG00000049907.9_0	chr5	+	1816	4	FSM	ENSMUSG00000049907.9	ENSMUST00000051937.9	1812	4	-13	9	-13	0	multi-exon	FALSE	canonical	2	8	junction_1	1.4142135623731	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACAGACATCTGACTGG	NA	False	NA	12	True	AATAAA	-14	NA	74355933	74360133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_74356252_74356763_74356821_74357927_74358005_74358769
ENSMUSG00000049916.13_0	chr16	-	1294	8	FSM	ENSMUSG00000049916.13	ENSMUST00000093336.8	1266	8	-29	1	5	0	multi-exon	FALSE	canonical	3	35	junction_7	117.062516003464	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16942999	16931262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16941375_16941519_16942853
ENSMUSG00000049916.13_1	chr16	-	1151	7	FSM	ENSMUSG00000049916.13	ENSMUST00000231681.2	1156	7	5	0	5	0	multi-exon	FALSE	canonical	3	255	junction_4	26.8824602048746	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16942999	16931262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942853
ENSMUSG00000049916.13_10	chr16	-	1367	6	NIC	ENSMUSG00000049916.13	novel	1156	7	NA	NA	5	0	intron_retention	FALSE	canonical	3	255	junction_4	29.3011945148999	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16942999	16931262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16939416_16942853
ENSMUSG00000049916.13_5	chr16	-	1126	7	NNC	ENSMUSG00000049916.13	novel	1156	7	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_6	94.3705756873166	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16942999	16931262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942878
ENSMUSG00000049916.13_9	chr16	-	743	5	ISM	ENSMUSG00000049916.13	ENSMUST00000093336.8	1266	8	4033	1	210	0	3prime_fragment	FALSE	canonical	3	255	junction_4	30.7520324531567	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16938937	16931262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819
ENSMUSG00000049922.9_0	chr2	-	2646	3	FSM	ENSMUSG00000049922.9	ENSMUST00000125276.2	2668	3	16	6	16	-6	multi-exon	FALSE	canonical	3	3	junction_2	25.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAACAAGATACAGC	NA	False	NA	NA	False	AATAAA	-15	NA	92290867	92283117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_92285120_92289011_92289536_92290747
ENSMUSG00000049922.9_1	chr2	-	3071	2	FSM	ENSMUSG00000049922.9	ENSMUST00000067631.7	3139	2	59	9	-26	-6	multi-exon	FALSE	canonical	3	54	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAACAAGATACAGC	NA	False	NA	NA	False	AATAAA	-15	NA	92290080	92283117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_92285120_92289011
ENSMUSG00000049922.9_2	chr2	-	1174	1	ISM	ENSMUSG00000049922.9	ENSMUST00000067631.7	3139	2	5847	10	5762	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAACAAACAAGATACAG	NA	False	NA	NA	False	AATAAA	-14	NA	92284292	92283118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_92283100_92284300
ENSMUSG00000049929.8_0	chrX	+	4224	3	FSM	ENSMUSG00000049929.8	ENSMUST00000060576.8	4238	3	12	2	12	-2	multi-exon	FALSE	canonical	1	3	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATACTTTGGTCAGTTA	NA	False	NA	NA	False	AATAAA	-21	NA	105964242	105977504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_105964596_105967683_105967786_105973735
ENSMUSG00000049932.4_0	chr9	+	1376	1	FSM	ENSMUSG00000049932.4	ENSMUST00000052686.4	1384	1	2	6	2	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTGGTTTAATGTTG	5255	False	NA	28	True	ATTAAA	-24	NA	44245992	44247368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44246000_44247400
ENSMUSG00000049940.8_1	chr3	-	1797	3	FSM	ENSMUSG00000049940.8	ENSMUST00000058578.8	3007	3	39	1171	39	1023	multi-exon	FALSE	canonical	3	569	junction_2	17	802	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAGCTCGAGTCGGACT	NA	False	NA	NA	False	AATAAA	-17	NA	41037442	41021931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_41023160_41024714_41024871_41037029
ENSMUSG00000049950.7_0	chr2	-	1019	2	FSM	ENSMUSG00000049950.7	ENSMUST00000062672.7	1042	2	22	1	22	-1	multi-exon	FALSE	canonical	3	304	junction_1	0	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTAGGATCCTGCATGG	2339	False	NA	-16	True	AATAAA	-17	NA	3333658	3329986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_3330911_3333563
ENSMUSG00000049950.7_2	chr2	-	1182	1	NIC	ENSMUSG00000049950.7	novel	1042	2	NA	NA	2510	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCTTAGGATCCTGCAT	4827	False	NA	-18	True	AATAAA	-15	NA	3331170	3329988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_3330000_3331200
ENSMUSG00000049957.15_0	chr11	+	2749	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	19	10	-4	-9	multi-exon	FALSE	canonical	3	99	junction_3	16.7164589551735	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATCCATCAATGAGAA	227	False	NA	NA	False	AATAAA	-10	NA	120348959	120355174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
ENSMUSG00000049957.15_13	chr11	+	1889	1	ISM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	4348	7	-3	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCCATCAATGAGAACAT	3010	False	NA	NA	False	AATAAA	-13	NA	120353288	120355177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_120353300_120355200
ENSMUSG00000049960.5_0	chr14	-	791	3	FSM	ENSMUSG00000049960.5	ENSMUST00000224286.2	801	3	8	2	8	-2	multi-exon	TRUE	canonical	3	91	junction_2	790	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCACGGTCCTCTGGCAT	8686	False	NA	-38	True	AATAAA	-12	NA	20443543	20441296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20441529_20441960_20442222_20443245
ENSMUSG00000049960.5_1	chr14	-	557	3	FSM	ENSMUSG00000049960.5	ENSMUST00000061444.5	2572	3	90	1925	-61	-2	multi-exon	FALSE	canonical	3	1591	junction_2	40	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCACGGTCCTCTGGCAT	8617	False	NA	-38	True	AATAAA	-12	NA	20443612	20441296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20441529_20441960_20442222_20443548
ENSMUSG00000049960.5_2	chr14	-	492	2	ISM	ENSMUSG00000049960.5	ENSMUST00000224286.2	801	3	1330	3	1330	-3	3prime_fragment	FALSE	canonical	3	1671	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCACGGTCCTCTGGCA	10008	False	NA	-39	True	AATAAA	-11	NA	20442221	20441297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_20441529_20441960
ENSMUSG00000049969.4_1	chr4	-	2879	2	FSM	ENSMUSG00000049969.4	ENSMUST00000054776.4	2977	2	95	3	95	-3	multi-exon	FALSE	canonical	3	844	junction_1	0	1298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTCCTGTGTTTTTATA	6	True	NA	-4	True	AATAAA	-14	NA	11007581	10988664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_10991355_11007392
ENSMUSG00000049969.4_3	chr4	-	2264	1	ISM	ENSMUSG00000049969.4	ENSMUST00000054776.4	2977	2	16748	3	16748	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTCCTGTGTTTTTATA	7722	False	NA	-4	True	AATAAA	-14	NA	10990928	10988664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_10988700_10990900
ENSMUSG00000049971.18_1	chr5	+	1654	12	FSM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	-4	1763	-4	-1763	multi-exon	TRUE	canonical	3	18	junction_6	12.1383212585269	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGAGAGCCCAGCTTGC	8697	False	NA	37	True	NA	NA	NA	127709321	127784675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127754268_127754365_127755154_127755205_127766900_127766945_127768053_127768175_127771290_127771390_127783926
ENSMUSG00000049971.18_12	chr5	+	1530	11	ISM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	12078	1772	12078	-1772	3prime_fragment	FALSE	canonical	3	18	junction_5	9.19565114605812	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTAGTGTACCTGAGAGC	NA	False	NA	28	True	NA	NA	NA	127721403	127784666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127754268_127754365_127755154_127755205_127766900_127766945_127768053_127768175_127771290_127771390_127783926
ENSMUSG00000049971.18_14	chr5	+	2980	2	ISM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	59672	1924	34901	-1924	3prime_fragment	FALSE	canonical	3	22	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGAGTGGAGCTGGCAGC	NA	False	NA	NA	False	AAAAAG	-13	NA	127768997	127784514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_127771390_127783926
ENSMUSG00000049971.18_15	chr5	+	694	1	ISM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	75796	623	51025	-623	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCTATTTTTTAAAGCTG	NA	False	NA	17	True	AATAAA	-22	NA	127785121	127785815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_127785100_127785800
ENSMUSG00000049971.18_4	chr5	+	738	7	NNC	ENSMUSG00000049971.18	novel	1713	11	NA	NA	-4	-22135	at_least_one_novel_splicesite	TRUE	canonical	3	16	junction_6	12.7986544431653	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGTCTTGGTCATGG	8697	False	NA	NA	False	NA	NA	NA	127709321	127744800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127744557
ENSMUSG00000050002.15_0	chr13	+	702	4	FSM	ENSMUSG00000050002.15	ENSMUST00000109868.4	1462	4	12	748	12	-1	multi-exon	FALSE	canonical	3	143	junction_3	23.6220236220354	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATCGGGCTGTACTGTAA	NA	False	NA	1	True	NA	NA	NA	58305479	58311759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58311246
ENSMUSG00000050002.15_1	chr13	+	745	5	FSM	ENSMUSG00000050002.15	ENSMUST00000051490.15	764	5	21	-2	-13	2	multi-exon	FALSE	canonical	3	14	junction_4	87.5928079239386	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGGGCTGTACTGTAAATT	NA	False	NA	4	True	NA	NA	NA	58305483	58311762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58310651_58310696_58311246
ENSMUSG00000050002.15_2	chr13	+	3904	3	FSM	ENSMUSG00000050002.15	ENSMUST00000226010.2	1898	3	11	-2017	6	1	multi-exon	FALSE	canonical	3	188	junction_1	4.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGGGCTGTACTGTAAAT	NA	False	NA	3	True	NA	NA	NA	58305473	58311761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_58305551_58307690_58307722_58307965
ENSMUSG00000050017.12_0	chr5	+	2750	11	NIC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-4	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	375.1786774325	1315	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTCCACCTGTGTGCTC	NA	False	NA	9	True	AATAAA	-10	NA	111478624	111536218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
ENSMUSG00000050017.12_62	chr5	+	1536	1	ISM	ENSMUSG00000050017.12	ENSMUST00000086635.9	2761	12	56061	0	6655	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111534689	111536225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_111534700_111536200
ENSMUSG00000050017.12_8	chr5	+	2670	10	NIC	ENSMUSG00000050017.12	novel	2632	11	NA	NA	-4	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	433.102702158834	111	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACCTGTGTGCTCCTGTG	NA	False	NA	14	True	AATAAA	-15	NA	111478624	111536223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111534368
ENSMUSG00000050022.17_0	chr5	+	2592	7	FSM	ENSMUSG00000050022.17	ENSMUST00000120630.3	4037	7	48	1397	7	-16	multi-exon	FALSE	canonical	0	0	junction_3	4.16333199893227	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTCTACCTTTGTTT	NA	False	NA	7	True	NA	NA	NA	140721328	140739049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_140721394_140726819_140727343_140729771_140729940_140733897_140734027_140734369_140734543_140734909_140735087_140737692
ENSMUSG00000050022.17_3	chr5	+	1394	2	ISM	ENSMUSG00000050022.17	ENSMUST00000176035.2	2402	4	22	8135	22	-6	5prime_fragment	FALSE	canonical	3	12	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGTTTCTGTGTCATG	NA	False	NA	17	True	NA	NA	NA	140735059	140739059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_140735087_140737692
ENSMUSG00000050022.17_5	chr5	+	1374	1	NIC	ENSMUSG00000050022.17	novel	2683	8	NA	NA	2653	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTGTGTCATGTATTG	2129	False	NA	22	True	NA	NA	NA	140737690	140739064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_140737700_140739100
ENSMUSG00000050022.17_6	chr5	+	3971	6	ISM	ENSMUSG00000050022.17	ENSMUST00000120630.3	4037	7	4110	1382	4069	-1	3prime_fragment	FALSE	canonical	0	0	junction_2	4.53431361950185	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTGTGTCATGTATTG	1293	False	NA	22	True	NA	NA	NA	140725390	140739064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_140727343_140729771_140729940_140733897_140734027_140734369_140734543_140734909_140735087_140737692
ENSMUSG00000050029.8_0	chrX	-	3764	4	NNC	ENSMUSG00000050029.8	novel	3545	3	NA	NA	-716	-382	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_3	34.5671648951558	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGGAGGCTTGTCTCTT	NA	False	NA	-9	True	AATAAA	-13	NA	50107611	50093170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_50095628_50103847_50104161_50106502_50107328_50107442
ENSMUSG00000050029.8_1	chrX	-	3196	3	FSM	ENSMUSG00000050029.8	ENSMUST00000053593.8	3545	3	-33	382	-33	-382	multi-exon	FALSE	canonical	3	105	junction_1	4	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGGAGGCTTGTCTCTT	NA	False	NA	-9	True	AATAAA	-13	NA	50106928	50093170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_50095628_50103847_50104161_50106502
ENSMUSG00000050029.8_2	chrX	-	1595	1	ISM	ENSMUSG00000050029.8	ENSMUST00000053593.8	3545	3	12130	382	12130	-382	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGGAGGCTTGTCTCTT	NA	False	NA	-9	True	AATAAA	-13	NA	50094765	50093170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_50093200_50094800
ENSMUSG00000050029.8_4	chrX	-	2630	2	ISM	ENSMUSG00000050029.8	ENSMUST00000053593.8	3545	3	2875	382	2875	-382	3prime_fragment	FALSE	canonical	3	105	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGGAGGCTTGTCTCTT	NA	False	NA	-9	True	AATAAA	-13	NA	50104020	50093170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_50095628_50103847
ENSMUSG00000050035.8_0	chr10	-	1984	2	FSM	ENSMUSG00000050035.8	ENSMUST00000059383.8	3402	2	-21	1439	-21	255	multi-exon	FALSE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTATAATTCTCAGCTGAC	NA	False	NA	NA	False	AATAAA	-42	NA	84938380	84933589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_84935353_84938159
ENSMUSG00000050035.8_1	chr10	-	2154	2	FSM	ENSMUSG00000050035.8	ENSMUST00000216889.2	1860	2	-44	-250	-44	250	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTAGCTATAATTCTCAG	NA	False	NA	NA	False	AATAAA	-37	NA	84938403	84933594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_84935353_84938007
ENSMUSG00000050043.17_5	chr2	-	1986	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	-9	0	-9	0	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	1780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTTGCTGTTTTTCCT	5282	False	NA	-8	True	AATAAA	-16	NA	84508409	84501660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
ENSMUSG00000050043.17_7	chr2	-	1872	7	FSM	ENSMUSG00000050043.17	ENSMUST00000111664.8	1926	7	53	1	-9	0	multi-exon	FALSE	canonical	3	107	junction_5	582.842865235181	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTTGCTGTTTTTCCT	5282	False	NA	-8	True	AATAAA	-16	NA	84508409	84501660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506440_84506502_84508194
ENSMUSG00000050050.18_0	chr5	-	4717	1	Genic_Genomic	ENSMUSG00000050050.18	novel	NA	NA	NA	NA	-12883	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTTGTCTTGGTCAT	NA	False	NA	NA	False	AATAAA	-12	NA	92804626	92799909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_-_92799900_92804600
ENSMUSG00000050052.13_0	chr8	-	1527	1	ISM	ENSMUSG00000050052.13	ENSMUST00000062613.12	2463	3	21240	3	-150	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCTTTAGTGTGTATAT	NA	False	NA	-7	True	ATTAAA	-15	NA	14003537	14002010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_14002000_14003500
ENSMUSG00000050052.13_1	chr8	-	2405	3	FSM	ENSMUSG00000050052.13	ENSMUST00000062613.12	2463	3	55	3	21	-3	multi-exon	FALSE	canonical	3	271	junction_2	12.5	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCTTTAGTGTGTATAT	4835	False	NA	-7	True	ATTAAA	-15	NA	14024722	14002010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_14004136_14005719_14005818_14024540
ENSMUSG00000050052.13_2	chr8	-	2465	4	FSM	ENSMUSG00000050052.13	ENSMUST00000145695.2	373	4	10	-2102	10	-3	multi-exon	FALSE	canonical	3	28	junction_3	120.875509880575	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCTTTAGTGTGTATAT	4535	False	NA	-7	True	ATTAAA	-15	NA	14025022	14002010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_14004136_14005719_14005818_14024540_14024730_14024969
ENSMUSG00000050052.13_4	chr8	-	2430	3	NNC	ENSMUSG00000050052.13	novel	2463	3	NA	NA	20	-3	intron_retention	TRUE	canonical	3	30	junction_2	133	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCTTTAGTGTGTATAT	4834	False	NA	-7	True	ATTAAA	-15	NA	14024723	14002010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_14004136_14005719_14005818_14024516
ENSMUSG00000050071.9_0	chrX	-	809	3	FSM	ENSMUSG00000050071.9	ENSMUST00000058125.9	866	3	56	1	-14	0	multi-exon	FALSE	canonical	3	4595	junction_1	588.5	1240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTCTGTACTCATCTTTT	NA	False	NA	-3	True	AATAAA	-16	NA	135116206	135114721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_135115333_135115652_135115730_135116085
ENSMUSG00000050071.9_1	chrX	-	385	1	ISM	ENSMUSG00000050071.9	ENSMUST00000058125.9	866	3	1156	1	1023	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTCTGTACTCATCTTTT	NA	False	NA	-3	True	AATAAA	-16	NA	135115106	135114721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_135114700_135115100
ENSMUSG00000050079.11_0	chr8	+	3815	15	FSM	ENSMUSG00000050079.11	ENSMUST00000060389.10	3852	15	31	6	2	-6	multi-exon	FALSE	canonical	3	105	junction_1	22.9280151245375	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTAAGATTTCACAGCT	8142	False	NA	2	True	AATAAA	-19	NA	95328595	95386897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95329059_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
ENSMUSG00000050079.11_4	chr8	+	3386	15	FSM	ENSMUSG00000050079.11	ENSMUST00000211983.2	3397	15	-96	107	4	-107	multi-exon	FALSE	canonical	3	30	junction_1	38.5556184529014	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATACATATAAGTATAT	8144	False	NA	-99	True	CATAAA	-16	NA	95328597	95386796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95328733_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
ENSMUSG00000050079.11_6	chr8	+	3164	1	FSM	ENSMUSG00000050079.11	ENSMUST00000212014.2	3181	1	10	7	-2	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	8150	False	NA	NA	False	NA	NA	NA	95328603	95331767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_95328600_95331800
ENSMUSG00000050088.10_0	chr17	+	2440	2	FSM	ENSMUSG00000050088.10	ENSMUST00000052691.9	2506	2	58	8	12	-6	multi-exon	FALSE	canonical	3	37	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAGACAGACTGGTGCTG	NA	False	NA	1	True	AATAAA	-9	NA	15163503	15166190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_15163582_15163828
ENSMUSG00000050088.10_1	chr17	+	1569	2	FSM	ENSMUSG00000050088.10	ENSMUST00000164837.3	2523	2	10	944	10	4	multi-exon	FALSE	canonical	3	15	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTAAGGTCATCGTTAA	NA	False	NA	12	True	AATAAA	-17	NA	15163501	15165252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_15163582_15163763
ENSMUSG00000050088.10_2	chr17	+	2668	1	NIC	ENSMUSG00000050088.10	novel	2506	2	NA	NA	19	-18	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAACCAAACCATTGAGAC	NA	False	NA	-11	True	AATAGA	-14	NA	15163510	15166178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_15163500_15166200
ENSMUSG00000050105.6_0	chr4	-	1225	1	NIC	ENSMUSG00000050105.6	novel	1226	2	NA	NA	687	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAGGACCATGAGTTT	5184	False	NA	-25	True	AATAAA	-16	NA	133979647	133978422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_133978400_133979600
ENSMUSG00000050105.6_1	chr4	-	1260	2	FSM	ENSMUSG00000050105.6	ENSMUST00000060050.6	1226	2	-36	2	-36	-2	multi-exon	FALSE	canonical	3	12	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAGGACCATGAGTTT	3378	False	NA	-25	True	AATAAA	-16	NA	133981453	133978422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133979570_133981340
ENSMUSG00000050106.19_1	chr11	+	2643	16	FSM	ENSMUSG00000050106.19	ENSMUST00000106334.9	2644	16	-7	8	-7	-8	multi-exon	FALSE	canonical	2	4	junction_1	5.15708789488366	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGTATATATTTGGAAAT	7625	False	NA	NA	False	NA	NA	NA	117673133	117683928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117673235_117673875_117674097_117674220_117674370_117674596_117674747_117674935_117675022_117675630_117675768_117675945_117676094_117677212_117677384_117677554_117677695_117681041_117681166_117681508_117681607_117681733_117681918_117682053_117682185_117682268_117682428_117682914_117682994_117683363
ENSMUSG00000050106.19_11	chr11	+	1106	5	ISM	ENSMUSG00000050106.19	ENSMUST00000119455.2	2736	16	8255	-12	-275	12	3prime_fragment	FALSE	canonical	3	8	junction_3	5.2618912949623	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATATATGTATATATT	NA	False	NA	NA	False	NA	NA	NA	117681738	117683921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_117681918_117682053_117682185_117682268_117682428_117682914_117682994_117683363
ENSMUSG00000050106.19_12	chr11	+	3284	15	NIC	ENSMUSG00000050106.19	novel	2577	16	NA	NA	8	-8	intron_retention	FALSE	canonical	2	3	junction_3	5.31507290636732	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGTATATATTTGGAAAT	7622	False	NA	NA	False	NA	NA	NA	117673130	117683928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117674097_117674220_117674370_117674596_117674747_117674938_117675022_117675630_117675768_117675945_117676094_117677212_117677384_117677554_117677695_117681041_117681166_117681508_117681607_117681733_117681918_117682053_117682185_117682268_117682428_117682914_117682994_117683363
ENSMUSG00000050106.19_13	chr11	+	3271	15	NIC	ENSMUSG00000050106.19	novel	2736	16	NA	NA	6	-8	intron_retention	FALSE	canonical	2	6	junction_1	4.94510683733456	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGTATATATTTGGAAAT	7638	False	NA	NA	False	NA	NA	NA	117673146	117683928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117674097_117674220_117674370_117674596_117674747_117674935_117675022_117675630_117675768_117675945_117676094_117677212_117677384_117677554_117677695_117681041_117681166_117681508_117681607_117681733_117681918_117682053_117682185_117682268_117682428_117682914_117682994_117683363
ENSMUSG00000050106.19_2	chr11	+	2629	16	FSM	ENSMUSG00000050106.19	ENSMUST00000050874.14	2577	16	24	-76	6	-6	multi-exon	FALSE	canonical	2	3	junction_4	5.46504040851179	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTATATATTTGGAAATAC	7638	False	NA	NA	False	NA	NA	NA	117673146	117683930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117673235_117673875_117674097_117674220_117674370_117674596_117674747_117674938_117675022_117675630_117675768_117675945_117676094_117677212_117677384_117677554_117677695_117681041_117681166_117681508_117681607_117681733_117681918_117682053_117682185_117682268_117682428_117682914_117682994_117683363
ENSMUSG00000050106.19_5	chr11	+	2532	15	NIC	ENSMUSG00000050106.19	novel	2577	16	NA	NA	18	-12	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	6.28612011676909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATGTATATATTTGG	7650	False	NA	NA	False	NA	NA	NA	117673158	117683924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117673235_117673875_117674097_117674220_117674370_117674596_117674747_117674938_117675022_117675630_117675768_117675945_117676094_117677212_117677384_117677554_117677695_117681041_117681166_117681508_117681607_117681733_117681918_117682053_117682185_117682268_117682428_117683363
ENSMUSG00000050107.3_0	chr11	-	2794	1	FSM	ENSMUSG00000050107.3	ENSMUST00000052140.3	2810	1	16	0	16	0	mono-exon	FALSE	NA	NA	NA	NA	NA	289	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGAGATTTGGCTTAT	NA	False	NA	-7	True	AATAAA	-17	NA	73029104	73026310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_73026300_73029100
ENSMUSG00000050122.20_1	chr1	+	2437	14	ISM	ENSMUSG00000050122.20	ENSMUST00000238425.2	4095	29	15432	46279	9057	-10	internal_fragment	FALSE	canonical	3	11	junction_5	16.9024349634101	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTTGAAATGTTGCAGAT	NA	False	NA	-5	True	AATAAA	-12	NA	37083845	37180407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_37084290_37090797_37090961_37099410_37099581_37102514_37102631_37124313_37124440_37139716_37139908_37148076_37148232_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
ENSMUSG00000050122.20_10	chr1	+	399	2	ISM	ENSMUSG00000050122.20	ENSMUST00000195450.2	462	3	2222	5	2222	-5	3prime_fragment	FALSE	canonical	3	67	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTTGCAGATTTCTC	NA	False	NA	0	True	AATAAA	-17	NA	37176810	37180412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_37176969_37180171
ENSMUSG00000050122.20_15	chr1	+	2737	15	NNC	ENSMUSG00000050122.20	novel	665	5	NA	NA	6985	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	19.0016111024775	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTGCAGATTTCTCCC	NA	False	NA	2	True	AATAAA	-19	NA	37081773	37180414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_37082066_37083844_37084290_37090797_37090961_37099410_37099581_37102514_37102631_37124313_37124440_37139716_37139908_37148076_37148232_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
ENSMUSG00000050122.20_2	chr1	+	1445	9	ISM	ENSMUSG00000050122.20	ENSMUST00000238425.2	4095	29	71283	46272	-52	-3	internal_fragment	FALSE	canonical	3	35	junction_7	9.96164519544839	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTGCAGATTTCTCCC	NA	False	NA	2	True	AATAAA	-19	NA	37139696	37180414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_37139908_37148076_37148232_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
ENSMUSG00000050122.20_4	chr1	+	1255	8	NIC	ENSMUSG00000050122.20	novel	4717	27	NA	NA	-17	-3	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	16.9440857179231	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTGCAGATTTCTCCC	NA	False	NA	2	True	AATAAA	-19	NA	37139731	37180414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_37139908_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
ENSMUSG00000050132.14_0	chr11	-	2415	4	FSM	ENSMUSG00000050132.14	ENSMUST00000153534.2	2497	4	2	80	2	-2	multi-exon	FALSE	canonical	3	65	junction_3	7.78888096369861	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAATGTCTGTCTTCAG	4415	False	NA	-4	True	AATACA	-18	NA	78374622	78364118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78365859_78366032_78366155_78373982_78374173_78374259
ENSMUSG00000050138.9_0	chr17	-	1089	2	NNC	ENSMUSG00000050138.9	novel	1972	2	NA	NA	50978	-36	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAACGAAACCAAAAA	3768	False	NA	NA	False	NA	NA	NA	88054444	88053264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_88054270_88054360
ENSMUSG00000050138.9_1	chr17	-	2016	2	FSM	ENSMUSG00000050138.9	ENSMUST00000055221.9	1972	2	-80	36	-80	-36	multi-exon	FALSE	canonical	1	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAACGAAACCAAAAA	7892	False	NA	NA	False	NA	NA	NA	88105502	88053264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_88054270_88104491
ENSMUSG00000050138.9_3	chr17	-	1056	1	NIC	ENSMUSG00000050138.9	novel	1972	2	NA	NA	51102	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAACGAAACCAAAAA	3892	False	NA	NA	False	NA	NA	NA	88054320	88053264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_88053300_88054300
ENSMUSG00000050144.14_0	chr3	-	3547	4	FSM	ENSMUSG00000050144.14	ENSMUST00000057935.9	3577	4	30	0	-1	0	multi-exon	FALSE	canonical	3	53	junction_3	3.85861230093008	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTTTTGGGTT	4096	False	NA	-4	True	ATTAAA	-18	NA	88332416	88317805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332034
ENSMUSG00000050144.14_2	chr3	-	2832	3	ISM	ENSMUSG00000050144.14	ENSMUST00000193433.6	3429	4	4303	1	4302	0	3prime_fragment	FALSE	canonical	3	60	junction_1	1	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTTTTGGGTT	8400	False	NA	-4	True	ATTAAA	-18	NA	88328112	88317805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88320205_88323294_88323423_88327807
ENSMUSG00000050144.14_3	chr3	-	3501	4	FSM	ENSMUSG00000050144.14	ENSMUST00000195657.6	3504	4	3	0	-1	0	multi-exon	FALSE	canonical	3	7	junction_3	25.4689353265241	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTTTTGGGTT	4096	False	NA	-4	True	ATTAAA	-18	NA	88332416	88317805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332080
ENSMUSG00000050144.14_4	chr3	-	1993	1	ISM	ENSMUSG00000050144.14	ENSMUST00000168755.7	3418	3	12616	1	12616	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTTTTGGGTT	NA	False	NA	-4	True	ATTAAA	-18	NA	88319798	88317805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88317800_88319800
ENSMUSG00000050144.14_6	chr3	-	3426	4	FSM	ENSMUSG00000050144.14	ENSMUST00000193433.6	3429	4	2	1	1	0	multi-exon	FALSE	canonical	0	0	junction_3	28.7672653471886	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTTTTGGGTT	4099	False	NA	-4	True	ATTAAA	-18	NA	88332413	88317805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332152
ENSMUSG00000050148.10_0	chrX	+	3324	1	FSM	ENSMUSG00000050148.10	ENSMUST00000060714.10	3344	1	-13	33	-13	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	380	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAAAAATAATA	7319	False	NA	-20	True	ATTAAA	-7	NA	152281209	152284533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_152281200_152284500
ENSMUSG00000050150.17_11	chr3	+	1440	4	NIC	ENSMUSG00000050150.17	novel	1407	4	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	46	junction_1	42.1030481873542	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTGTATTCATTG	NA	False	NA	NA	False	NA	NA	NA	135053798	135064067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_135053884_135054090_135054535_135060771_135060833_135063217
ENSMUSG00000050150.17_16	chr3	+	1860	11	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	5	1032	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	33.6964389809962	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGACTGCTTTATTTTTG	NA	False	NA	3	True	AATACA	-13	NA	135053799	135099876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
ENSMUSG00000050150.17_18	chr3	+	996	3	ISM	ENSMUSG00000050150.17	ENSMUST00000159658.8	588	4	9	13673	4	0	5prime_fragment	FALSE	canonical	3	17	junction_1	66	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTGTATTCATTG	NA	False	NA	NA	False	NA	NA	NA	135053798	135064067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_135053884_135060771_135060833_135063217
ENSMUSG00000050150.17_2	chr3	+	1462	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160047.8	1196	4	-16	-250	1	11	multi-exon	FALSE	canonical	3	81	junction_1	29.6348143611905	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCATTGTTTTTTCTTTC	NA	False	NA	NA	False	AAGAAA	-5	NA	135053790	135064078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217
ENSMUSG00000050150.17_21	chr3	+	2086	12	NIC	ENSMUSG00000050150.17	novel	2248	13	NA	NA	4	-3	combination_of_known_splicesites	FALSE	canonical	3	12	junction_9	36.422679339224	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACCTGCTATGTCTCATG	NA	False	NA	1	True	ATTAAA	-13	NA	135053810	135103582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_135053884_135054090_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097860_135098011_135099720_135099830_135103356
ENSMUSG00000050150.17_25	chr3	+	2089	12	NIC	ENSMUSG00000050150.17	novel	2248	13	NA	NA	4	-3	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	36.7153445976695	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACCTGCTATGTCTCATG	NA	False	NA	1	True	ATTAAA	-13	NA	135053810	135103582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097860_135098011_135099720_135099830_135103356
ENSMUSG00000050150.17_27	chr3	+	1404	7	NIC	ENSMUSG00000050150.17	novel	1545	6	NA	NA	4	50	combination_of_known_splicesites	FALSE	canonical	3	46	junction_1	33.6324083123539	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTGTATAGCCAGGTTC	NA	False	NA	4	True	ATTAAA	-16	NA	135053798	135080236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_135053884_135054090_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
ENSMUSG00000050150.17_29	chr3	+	3071	1	NIC	ENSMUSG00000050150.17	novel	588	4	NA	NA	9217	2311	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	135063307	135066378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_135063300_135066400
ENSMUSG00000050150.17_39	chr3	+	1418	10	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	1	1028	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	36.7910348714681	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATGATGACTGCTTTATT	NA	False	NA	-1	True	AATACA	-9	NA	135053790	135099872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_135053884_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
ENSMUSG00000050150.17_6	chr3	+	1868	11	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	-5	1028	combination_of_known_splicesites	FALSE	canonical	3	24	junction_9	33.9293383371972	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATGATGACTGCTTTATT	NA	False	NA	-1	True	AATACA	-9	NA	135053784	135099872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_135053884_135054090_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
ENSMUSG00000050150.17_8	chr3	+	1421	7	ISM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	-34	18608	-5	50	5prime_fragment	FALSE	canonical	3	60	junction_5	29.9146935282461	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTGTATAGCCAGGTTC	NA	False	NA	4	True	ATTAAA	-16	NA	135053784	135080236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
ENSMUSG00000050157.7_1	chr10	-	1326	4	NIC	ENSMUSG00000050157.7	novel	1221	7	NA	NA	-17	-577	intron_retention	FALSE	canonical	3	20	junction_2	7.58653778449403	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	4899	False	NA	NA	False	NA	NA	NA	75776523	75774586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_75775673_75775764_75775852_75776227_75776255_75776397
ENSMUSG00000050157.7_11	chr10	-	269	1	ISM	ENSMUSG00000050157.7	ENSMUST00000059658.6	1221	7	2678	3	2617	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAATAATTATGTCTCC	7594	False	NA	NA	False	AGTAAA	-39	NA	75773828	75773559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_75773600_75773800
ENSMUSG00000050157.7_19	chr10	-	2116	5	NIC	ENSMUSG00000050157.7	novel	714	7	NA	NA	-7	2	intron_retention	FALSE	canonical	3	20	junction_3	6.75925291729789	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATTATGTCTCCTGTTA	4909	False	NA	NA	False	AGTAAA	-44	NA	75776513	75773554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_75775315_75775546_75775673_75775764_75775852_75776227_75776255_75776397
ENSMUSG00000050157.7_2	chr10	-	1628	5	NIC	ENSMUSG00000050157.7	novel	1221	7	NA	NA	-92	2	intron_retention	FALSE	canonical	3	20	junction_3	7.17635004720366	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATTATGTCTCCTGTTA	4824	False	NA	NA	False	AGTAAA	-44	NA	75776598	75773554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_75774191_75774995_75775673_75775764_75775852_75776227_75776255_75776397
ENSMUSG00000050157.7_5	chr10	-	1228	7	FSM	ENSMUSG00000050157.7	ENSMUST00000219979.2	714	7	-59	-455	2	2	multi-exon	FALSE	canonical	3	20	junction_5	8.23441288469042	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATTATGTCTCCTGTTA	4918	False	NA	NA	False	AGTAAA	-44	NA	75776504	75773554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_75774191_75774995_75775166_75775239_75775315_75775546_75775673_75775764_75775852_75776227_75776255_75776397
ENSMUSG00000050174.16_0	chr3	-	1076	5	FSM	ENSMUSG00000050174.16	ENSMUST00000052645.13	1155	5	-1	80	-1	-4	multi-exon	FALSE	canonical	1	4	junction_4	11.8743420870379	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAGATTGTAGCTCTAA	NA	False	NA	-18	True	AATAAA	-11	NA	37473746	37459138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473490
ENSMUSG00000050174.16_3	chr3	-	1216	5	FSM	ENSMUSG00000050174.16	ENSMUST00000146324.8	1264	5	-32	80	-7	-4	multi-exon	FALSE	canonical	2	6	junction_4	11.0792599030802	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAGATTGTAGCTCTAA	NA	False	NA	-18	True	AATAAA	-11	NA	37474367	37459138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473971
ENSMUSG00000050174.16_4	chr3	-	3539	4	ISM	ENSMUSG00000050174.16	ENSMUST00000052645.13	1155	5	-9	62	-9	10	intron_retention	FALSE	canonical	3	22	junction_1	5.24933858267454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCTCACTGGGTCACAAC	NA	False	NA	0	True	AATAAA	-29	NA	37473754	37459120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849
ENSMUSG00000050188.9_0	chr4	+	842	2	FSM	ENSMUSG00000050188.9	ENSMUST00000055575.8	943	2	96	5	59	-2	multi-exon	FALSE	canonical	3	289	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACGTCTGTGCCTGATG	NA	False	NA	25	True	CATAAA	-16	NA	125990511	125992372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_125990603_125991621
ENSMUSG00000050188.9_1	chr4	+	794	2	FSM	ENSMUSG00000050188.9	ENSMUST00000179323.2	808	2	12	2	5	-2	multi-exon	FALSE	canonical	3	54	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACGTCTGTGCCTGATG	NA	False	NA	25	True	CATAAA	-16	NA	125990457	125992372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_125990501_125991621
ENSMUSG00000050188.9_3	chr4	+	748	1	NIC	ENSMUSG00000050188.9	novel	943	2	NA	NA	1168	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACACACGTCTGTGCCT	NA	False	NA	21	True	CATAAA	-12	NA	125991620	125992368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_125991600_125992400
ENSMUSG00000050192.9_0	chr3	+	4959	5	FSM	ENSMUSG00000050192.9	ENSMUST00000060500.9	5027	5	58	10	58	-10	multi-exon	FALSE	canonical	3	73	junction_1	7.24568837309472	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCTTATATGTGTATG	NA	False	NA	9	True	AATAAA	-12	NA	28835482	28852985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_28835563_28836164_28836366_28836876_28836982_28847833_28847966_28848544
ENSMUSG00000050192.9_4	chr3	+	3744	1	ISM	ENSMUSG00000050192.9	ENSMUST00000060500.9	5027	5	13817	10	13817	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCTTATATGTGTATG	NA	False	NA	9	True	AATAAA	-12	NA	28849241	28852985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_28849200_28853000
ENSMUSG00000050197.6_0	chrX	+	912	3	FSM	ENSMUSG00000050197.6	ENSMUST00000152730.4	876	3	-37	1	-37	-1	multi-exon	FALSE	canonical	3	73	junction_1	2	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCTTTAATTTTATGTG	NA	False	NA	1	True	AATAAA	-14	NA	37210058	37218843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_37210700_37211950_37211997_37218618
ENSMUSG00000050199.14_0	chr2	+	5049	18	FSM	ENSMUSG00000050199.14	ENSMUST00000046548.14	5060	18	2	9	2	-9	multi-exon	FALSE	canonical	3	53	junction_13	11.7799900717261	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTCAAGTTATTGAAAA	NA	False	NA	31	True	ATTAAA	-43	NA	109747993	109844593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_109748651_109801036_109801109_109820049_109820122_109821448_109821521_109826898_109827115_109827937_109828010_109829750_109829820_109830640_109830713_109830904_109830977_109831274_109831344_109832810_109832883_109833798_109833865_109834895_109834968_109836848_109836921_109837489_109837616_109838429_109838546_109838926_109839011_109841595
ENSMUSG00000050199.14_11	chr2	+	2264	1	ISM	ENSMUSG00000050199.14	ENSMUST00000046548.14	5060	18	94338	9	11457	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTCAAGTTATTGAAAA	NA	False	NA	31	True	ATTAAA	-43	NA	109842329	109844593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_109842300_109844600
ENSMUSG00000050211.15_0	chr2	-	4169	21	NIC	ENSMUSG00000050211.15	novel	4477	20	NA	NA	159	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_20	7.64460594144656	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTGGTTCATCTGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	120075404	119996894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_119998532_119998952_119999137_120000509_120000677_120001588_120001793_120002198_120002307_120004133_120004272_120004733_120004849_120007202_120007426_120011897_120012035_120013184_120013321_120015051_120015090_120015480_120015568_120015669_120015831_120016827_120016892_120017676_120017720_120018990_120019032_120019884_120020017_120021674_120021812_120030693_120030767_120037610_120037717_120075166
ENSMUSG00000050211.15_1	chr2	-	598	1	ISM	ENSMUSG00000050211.15	ENSMUST00000136845.8	4424	17	24203	2	24203	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTGGTTCATCTGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	119997492	119996894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119996900_119997500
ENSMUSG00000050211.15_17	chr2	-	4484	22	NIC	ENSMUSG00000050211.15	novel	4477	20	NA	NA	-21	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_20	8.54864697360729	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATATTGGTTCATCTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	120075610	119996896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_119998532_119998952_119999137_120000509_120000677_120001588_120001793_120002198_120002307_120004133_120004272_120004733_120004849_120007202_120007426_120011897_120012035_120013184_120013321_120015051_120015090_120015480_120015568_120015669_120015831_120016827_120016892_120017676_120017720_120018990_120019032_120019884_120020017_120021674_120021812_120030693_120030767_120037610_120037717_120040293_120040405_120075166
ENSMUSG00000050211.15_3	chr2	-	4238	20	FSM	ENSMUSG00000050211.15	ENSMUST00000090071.5	4477	20	235	4	8	-4	multi-exon	FALSE	canonical	0	0	junction_19	6.9306017774238	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATATTGGTTCATCTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	120075581	119996896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119998532_119998952_119999137_120000509_120000677_120001588_120001793_120002198_120002307_120004133_120004272_120004733_120004849_120007202_120007426_120011897_120012035_120013184_120013321_120015051_120015090_120015480_120015568_120015669_120015831_120016827_120016892_120017676_120017720_120018990_120019032_120019884_120020017_120021674_120021812_120030693_120030767_120075166
ENSMUSG00000050211.15_4	chr2	-	4548	21	NIC	ENSMUSG00000050211.15	novel	4477	20	NA	NA	-415	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_19	8.08949936646267	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTGGTTCATCTGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	120076231	119996894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_119998532_119998952_119999137_120000509_120000677_120001588_120001793_120002198_120002307_120004133_120004272_120004733_120004849_120007202_120007426_120011897_120012035_120013184_120013321_120015051_120015090_120015480_120015568_120015669_120015831_120016827_120016892_120017676_120017720_120018990_120019032_120019884_120020017_120021674_120021812_120030693_120030767_120075166_120075555_120075896
ENSMUSG00000050211.15_5	chr2	-	2777	8	ISM	ENSMUSG00000050211.15	ENSMUST00000136845.8	4424	17	14269	2	14269	-2	3prime_fragment	FALSE	canonical	3	22	junction_1	4.23782770691181	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTGGTTCATCTGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	120007426	119996894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_119998532_119998952_119999137_120000509_120000677_120001588_120001793_120002198_120002307_120004133_120004272_120004733_120004849_120007202
ENSMUSG00000050212.5_1	chr4	+	945	3	FSM	ENSMUSG00000050212.5	ENSMUST00000052876.3	1689	3	734	10	-54	-1	multi-exon	FALSE	canonical	3	53	junction_1	143	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTGGCGACTCAGTCTC	7076	False	NA	10	True	AATGAA	-5	NA	126042270	126043657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_126042425_126042676_126042839_126043028
ENSMUSG00000050212.5_2	chr4	+	880	3	FSM	ENSMUSG00000050212.5	ENSMUST00000106152.3	1364	3	473	11	-56	-1	multi-exon	FALSE	canonical	3	244	junction_1	47.5	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTGGCGACTCAGTCTC	7074	False	NA	10	True	AATGAA	-5	NA	126042268	126043657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_126042425_126042743_126042839_126043028
ENSMUSG00000050212.5_3	chr4	+	1200	2	FSM	ENSMUSG00000050212.5	ENSMUST00000106150.3	1144	2	-57	1	-57	-1	multi-exon	FALSE	canonical	3	339	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTGGCGACTCAGTCTC	7073	False	NA	10	True	AATGAA	-5	NA	126042267	126043657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_126042839_126043028
ENSMUSG00000050212.5_4	chr4	+	1360	1	NIC	ENSMUSG00000050212.5	novel	1689	3	NA	NA	-27	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTGGCGACTCAGTCTC	7103	False	NA	10	True	AATGAA	-5	NA	126042297	126043657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126042300_126043700
ENSMUSG00000050212.5_5	chr4	+	779	2	NIC	ENSMUSG00000050212.5	novel	1689	3	NA	NA	-50	-1	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTGGCGACTCAGTCTC	7080	False	NA	10	True	AATGAA	-5	NA	126042274	126043657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_126042425_126043028
ENSMUSG00000050213.7_0	chr4	+	2304	4	FSM	ENSMUSG00000050213.7	ENSMUST00000052183.7	2345	4	28	13	-2	-13	multi-exon	FALSE	canonical	3	77	junction_1	6.84754619472471	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATAGCCTCATTTTAGA	NA	False	NA	1	True	AATAAA	-7	NA	124960492	124967822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124960746_124961882_124961986_124964899_124965484_124966458
ENSMUSG00000050213.7_1	chr4	+	2397	4	NIC	ENSMUSG00000050213.7	novel	2345	4	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	40.7785346584314	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTTAGAGGGTATTACT	NA	False	NA	11	True	AATAAA	-17	NA	124960492	124967832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_124960746_124961799_124961986_124964899_124965484_124966458
ENSMUSG00000050213.7_12	chr4	+	1920	2	ISM	ENSMUSG00000050213.7	ENSMUST00000052183.7	2345	4	4469	7	4439	-7	3prime_fragment	FALSE	canonical	3	92	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTCATTTTAGAGGGTAT	NA	False	NA	7	True	AATAAA	-13	NA	124964933	124967828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_124965484_124966458
ENSMUSG00000050213.7_13	chr4	+	1114	1	ISM	ENSMUSG00000050213.7	ENSMUST00000052183.7	2345	4	6244	13	6214	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATAGCCTCATTTTAGA	NA	False	NA	1	True	AATAAA	-7	NA	124966708	124967822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_124966700_124967800
ENSMUSG00000050222.12_0	chr14	+	1263	3	FSM	ENSMUSG00000050222.12	ENSMUST00000089494.6	1274	3	9	2	9	-2	multi-exon	FALSE	canonical	3	15	junction_1	7	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATTTGAAAGCCACTGGT	NA	False	NA	8	True	ATTAAA	-20	NA	57762242	57780621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_57762379_57762760_57763057_57779790
ENSMUSG00000050222.12_2	chr14	+	1275	2	ISM	ENSMUSG00000050222.12	ENSMUST00000089494.6	1274	3	380	1	380	-1	3prime_fragment	FALSE	canonical	3	29	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTGAAAGCCACTGGTC	NA	False	NA	9	True	ATTAAA	-21	NA	57762613	57780622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_57763057_57779790
ENSMUSG00000050229.4_0	chr1	+	2478	1	FSM	ENSMUSG00000050229.4	ENSMUST00000052455.4	7554	1	18	5058	18	-5058	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACATAGAGCCTGTCT	5468	False	NA	27	True	AATAAA	-40	NA	172204130	172206608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_172204100_172206600
ENSMUSG00000050229.4_1	chr1	+	2485	1	FSM	ENSMUSG00000050229.4	ENSMUST00000052455.4	7554	1	4927	142	4927	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTGAATATATTGTTCT	NA	False	NA	10	True	TATAAA	-17	NA	172209039	172211524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_172209000_172211500
ENSMUSG00000050234.8_0	chr4	-	1666	2	FSM	ENSMUSG00000050234.8	ENSMUST00000053753.8	1685	2	15	4	15	-4	multi-exon	FALSE	canonical	3	11	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGTCAGGTGTGCACTGA	NA	False	NA	-4	True	AATAAA	-13	NA	127207817	127205217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_127206779_127207712
ENSMUSG00000050234.8_1	chr4	-	1919	1	NIC	ENSMUSG00000050234.8	novel	1685	2	NA	NA	698	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCAGGTGTGCACTGATG	NA	False	NA	-2	True	AATAAA	-15	NA	127207134	127205215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_127205200_127207100
ENSMUSG00000050240.17_1	chr16	+	6345	3	FSM	ENSMUSG00000050240.17	ENSMUST00000090190.14	6354	3	1	8	1	-8	multi-exon	FALSE	canonical	3	75	junction_1	2.5	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGATGTGGAGTCTGT	6312	False	NA	9	True	ATTAAA	-11	NA	17051436	17081286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17051595_17072831_17072931_17075198
ENSMUSG00000050240.17_3	chr16	+	6287	3	NNC	ENSMUSG00000050240.17	novel	6354	3	NA	NA	19470	-8	intron_retention	FALSE	canonical	3	13	junction_1	33.5	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGATGTGGAGTCTGT	654	False	NA	9	True	ATTAAA	-11	NA	17070997	17081286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_17071098_17072831_17072931_17075198
ENSMUSG00000050240.17_6	chr16	+	4028	1	ISM	ENSMUSG00000050240.17	ENSMUST00000090190.14	6354	3	25823	8	25731	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGATGTGGAGTCTGT	6915	False	NA	9	True	ATTAAA	-11	NA	17077258	17081286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_17077300_17081300
ENSMUSG00000050244.10_0	chr13	+	6761	45	FSM	ENSMUSG00000050244.10	ENSMUST00000059270.10	6780	45	16	3	16	-3	multi-exon	TRUE	canonical	3	181	junction_14	60.7064258923889	497	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAAACTGGTATTTGTCT	1730	False	NA	2	True	AGTAAA	-16	NA	12410267	12453771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_12410352_12410620_12410795_12411302_12411520_12413783_12413926_12415930_12416033_12416330_12416472_12417594_12417807_12418025_12418160_12419768_12419872_12420903_12421015_12421405_12421524_12422397_12422506_12423534_12423631_12424089_12424179_12425276_12425489_12426100_12426223_12426925_12427118_12428105_12428290_12428392_12428530_12429253_12429447_12430297_12430468_12430831_12430991_12432340_12432584_12432978_12433111_12435922_12436027_12436158_12436303_12436921_12437041_12437121_12437244_12438514_12438644_12439500_12439732_12441034_12441162_12441642_12441804_12444647_12444695_12445021_12445146_12445791_12445933_12446560_12446854_12447509_12447661_12448492_12448652_12448797_12448933_12449067_12449173_12449254_12449424_12449927_12450083_12450550_12450710_12452714_12452824_12453469
ENSMUSG00000050248.12_1	chr5	+	3565	10	NNC	ENSMUSG00000050248.12	novel	2796	12	NA	NA	3	-13226	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	13.7194104181711	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGCAAACTAAGAAAGGA	8845	False	NA	NA	False	NA	NA	NA	37495845	37531882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37529263_37531111_37531410
ENSMUSG00000050248.12_2	chr5	+	4069	20	FSM	ENSMUSG00000050248.12	ENSMUST00000056365.9	4091	20	13	9	13	-9	multi-exon	FALSE	canonical	3	11	junction_14	7.49034466215639	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTATGTATAAGAGT	8855	False	NA	-6	True	CATAAA	-10	NA	37495855	37582390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37535526_37535767_37537753_37537930_37540421_37540582_37544028_37544484_37549336_37549542_37550423_37550541_37567577_37567806_37573070_37573292_37574748_37574837_37576467_37576671_37579181_37579284_37581752
ENSMUSG00000050248.12_5	chr5	+	4084	20	NNC	ENSMUSG00000050248.12	novel	4091	20	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_15	8.17163528730315	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATAAGAGTGGACCTC	8838	False	NA	1	True	CATAAA	-17	NA	37495838	37582397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37535526_37535767_37537753_37537930_37540421_37540582_37544028_37544484_37549336_37549542_37550423_37550541_37567577_37567806_37573079_37573292_37574748_37574837_37576467_37576671_37579181_37579284_37581752
ENSMUSG00000050248.12_6	chr5	+	1698	9	NNC	ENSMUSG00000050248.12	novel	2796	12	NA	NA	11	-15385	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	11.0227038425243	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACTGATGACTCCCAATA	8853	False	NA	NA	False	NA	NA	NA	37495853	37529723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37529263
ENSMUSG00000050248.12_9	chr5	+	2881	12	FSM	ENSMUSG00000050248.12	ENSMUST00000101258.5	2796	12	-85	0	24	0	multi-exon	FALSE	canonical	3	19	junction_8	6.81029847284656	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGAGCCTGCAATCCT	8866	False	NA	NA	False	NA	NA	NA	37495866	37545108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37535526_37535767_37537753_37537930_37540421_37540582_37544028
ENSMUSG00000050270.13_0	chr11	+	1581	6	FSM	ENSMUSG00000050270.13	ENSMUST00000061786.6	1597	6	13	3	13	-3	multi-exon	FALSE	canonical	3	15	junction_4	4.45421149026402	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCCAATTACTGGGGAG	3931	False	NA	NA	False	NA	NA	NA	66915992	66926135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_66916098_66916734_66916765_66920791_66920853_66921887_66922012_66923006_66923067_66924934
ENSMUSG00000050270.13_1	chr11	+	1520	7	NNC	ENSMUSG00000050270.13	novel	1597	6	NA	NA	14	-35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	9.01849950564579	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTTGTGACTGGTTAA	3932	False	NA	NA	False	NA	NA	NA	66915993	66926103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_66916098_66916734_66916765_66920791_66920853_66921887_66922012_66923006_66923067_66924934_66925890_66925917
ENSMUSG00000050270.13_9	chr11	+	1771	2	ISM	ENSMUSG00000050270.13	ENSMUST00000079077.12	1147	7	-6	7235	-6	-7235	intron_retention	FALSE	canonical	3	21	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	3912	False	NA	NA	False	AATACA	-37	NA	66915973	66918381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_66916098_66916734
ENSMUSG00000050271.13_0	chr8	+	4903	6	FSM	ENSMUSG00000050271.13	ENSMUST00000110492.2	4780	6	-127	4	-127	-4	multi-exon	FALSE	canonical	3	27	junction_2	3.13687742827162	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTAATTTGTTTTTATT	NA	False	NA	6	True	AATAAA	-12	NA	36561854	36614937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_36562143_36566723_36567142_36569709_36571506_36596157_36596316_36606505_36607267_36613455
ENSMUSG00000050271.13_1	chr8	+	4758	6	NNC	ENSMUSG00000050271.13	novel	4780	6	NA	NA	-13	-21	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	10.2878569196893	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAGAAAAAAGTCTTAT	NA	False	NA	-11	True	TTTAAA	-13	NA	36562001	36614920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_36562143_36566704_36567142_36569709_36571506_36596157_36596316_36606505_36607267_36613455
ENSMUSG00000050271.13_3	chr8	+	3218	4	ISM	ENSMUSG00000050271.13	ENSMUST00000110492.2	4780	6	8708	3	8675	-3	3prime_fragment	FALSE	canonical	3	28	junction_3	3.29983164553722	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTAATTTGTTTTTATTG	NA	False	NA	7	True	AATAAA	-13	NA	36570689	36614938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_36571506_36596157_36596316_36606505_36607267_36613455
ENSMUSG00000050271.13_4	chr8	+	2354	3	ISM	ENSMUSG00000050271.13	ENSMUST00000110492.2	4780	6	34222	5	34189	-5	3prime_fragment	FALSE	canonical	3	28	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATTAATTTGTTTTTAT	NA	False	NA	5	True	AATAAA	-11	NA	36596203	36614936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_36596316_36606505_36607267_36613455
ENSMUSG00000050271.13_5	chr8	+	1184	1	ISM	ENSMUSG00000050271.13	ENSMUST00000110492.2	4780	6	51771	5	51738	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATTAATTTGTTTTTAT	NA	False	NA	5	True	AATAAA	-11	NA	36613752	36614936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_36613800_36614900
ENSMUSG00000050288.7_0	chr11	+	2168	1	FSM	ENSMUSG00000050288.7	ENSMUST00000057893.7	3663	1	8	1487	8	-1487	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAACCATTTTAT	NA	False	NA	NA	False	AATAAA	-7	NA	102495229	102497397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102495200_102497400
ENSMUSG00000050295.5_0	chr13	+	2904	1	FSM	ENSMUSG00000050295.5	ENSMUST00000062292.5	5844	1	32	2908	32	-2908	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGACCTATATGTCTGA	NA	False	NA	NA	False	AATAAA	-16	NA	31990647	31993551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_31990600_31993600
ENSMUSG00000050299.9_0	chr16	-	503	1	FSM	ENSMUSG00000050299.9	ENSMUST00000052867.9	402	1	-59	-42	-59	42	mono-exon	FALSE	NA	NA	NA	NA	NA	737	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAAGAG	NA	False	NA	-19	True	AATAAA	-13	NA	76200599	76200096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_76200100_76200600
ENSMUSG00000050310.10_0	chr15	+	9317	38	FSM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	-10	5	-6	-5	multi-exon	TRUE	canonical	3	15	junction_28	25.9902212323754	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAACTTGTGGTGGTGTTG	NA	False	NA	1	True	AATAAA	-16	NA	6737853	6829877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968_6789139_6793760_6793829_6794532_6794601_6797534_6797618_6798726_6798815_6799225_6799317_6799408_6799476_6799603_6799685_6801612_6801714_6803289_6803456_6804087_6804190_6804312_6804360_6805530_6805667_6806234_6806435_6806796_6806924_6807410_6807576_6807721_6807799_6808668_6808748_6811137_6811248_6811644_6811733_6812562_6812656_6813038_6813146_6813412_6813643_6815856_6816863_6818911_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
ENSMUSG00000050310.10_11	chr15	+	7683	21	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	66255	12	66255	-12	3prime_fragment	FALSE	canonical	3	15	junction_11	31.816505150629	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCTTAAACTTGTGGT	4041	False	NA	-6	True	AATAAA	-9	NA	6804118	6829870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_6804190_6804312_6804360_6805530_6805667_6806234_6806435_6806796_6806924_6807410_6807576_6807721_6807799_6808668_6808748_6811137_6811248_6811644_6811733_6812562_6812656_6813038_6813146_6813412_6813643_6815856_6816863_6818911_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
ENSMUSG00000050310.10_13	chr15	+	6791	13	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	73272	4	73272	-4	3prime_fragment	FALSE	canonical	3	15	junction_3	16.4612339216179	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTTGTGGTGGTGTTGA	NA	False	NA	2	True	AATAAA	-17	NA	6811135	6829878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_6811248_6811644_6811733_6812562_6812656_6813038_6813146_6813412_6813643_6815856_6816863_6818911_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
ENSMUSG00000050310.10_14	chr15	+	5610	8	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	78543	5	78543	-5	3prime_fragment	FALSE	canonical	3	20	junction_1	5.8309518948453	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAACTTGTGGTGGTGTTG	NA	False	NA	1	True	AATAAA	-16	NA	6816406	6829877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_6816863_6818911_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
ENSMUSG00000050310.10_15	chr15	+	5157	7	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	81047	3	81047	-3	3prime_fragment	FALSE	canonical	3	26	junction_1	4.49691252107735	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGGTGGTGTTGAC	NA	False	NA	3	True	AATAAA	-18	NA	6818910	6829879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
ENSMUSG00000050310.10_16	chr15	+	4879	5	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	83222	5	83222	-5	3prime_fragment	FALSE	canonical	3	29	junction_3	3.67423461417477	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAACTTGTGGTGGTGTTG	NA	False	NA	1	True	AATAAA	-16	NA	6821085	6829877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
ENSMUSG00000050310.10_17	chr15	+	4576	4	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	85672	5	85672	-5	3prime_fragment	FALSE	canonical	3	29	junction_2	3.74165738677394	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAACTTGTGGTGGTGTTG	NA	False	NA	1	True	AATAAA	-16	NA	6823535	6829877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_6823614_6823925_6824050_6825376_6825516_6825642
ENSMUSG00000050310.10_18	chr15	+	3302	1	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	88713	4	88713	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTTGTGGTGGTGTTGA	NA	False	NA	2	True	AATAAA	-17	NA	6826576	6829878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_6826600_6829900
ENSMUSG00000050310.10_19	chr15	+	4291	2	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	87597	4	87597	-4	3prime_fragment	FALSE	canonical	3	32	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTTGTGGTGGTGTTGA	NA	False	NA	2	True	AATAAA	-17	NA	6825460	6829878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_6825516_6825642
ENSMUSG00000050310.10_24	chr15	+	6681	12	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	73779	4	73779	-4	3prime_fragment	FALSE	canonical	3	15	junction_2	7.68813618613308	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTTGTGGTGGTGTTGA	NA	False	NA	2	True	AATAAA	-17	NA	6811642	6829878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_6811733_6812562_6812656_6813038_6813146_6813412_6813643_6815856_6816863_6818911_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
ENSMUSG00000050310.10_26	chr15	+	6384	9	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	75557	3	75557	-3	3prime_fragment	FALSE	canonical	3	20	junction_2	5.54385921538417	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGGTGGTGTTGAC	NA	False	NA	3	True	AATAAA	-18	NA	6813420	6829879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_6813643_6815856_6816863_6818911_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
ENSMUSG00000050310.10_5	chr15	+	9371	39	NNC	ENSMUSG00000050310.10	novel	9312	38	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_31	27.7495227180637	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAACTTGTGGTGGTGTTG	NA	False	NA	1	True	AATAAA	-16	NA	6737871	6829877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968_6789139_6793760_6793829_6794532_6794601_6797534_6797618_6798726_6798815_6799225_6799317_6799408_6799476_6799603_6799685_6801612_6801714_6803289_6803456_6804087_6804190_6804312_6804360_6805530_6805667_6806234_6806435_6806796_6806924_6807410_6807576_6807721_6807799_6808668_6808748_6811137_6811248_6811644_6811733_6812562_6812656_6813038_6813146_6813412_6813643_6815856_6816863_6817130_6817203_6818911_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
ENSMUSG00000050312.13_0	chr16	-	3798	6	FSM	ENSMUSG00000050312.13	ENSMUST00000063089.12	3813	6	13	2	2	-2	multi-exon	FALSE	canonical	3	18	junction_4	5.74804314527997	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGATGCCTTTTTTTGA	NA	False	NA	NA	False	ATTAAA	-16	NA	62607127	62552808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596995_62606150_62606261_62607033
ENSMUSG00000050312.13_10	chr16	-	3431	5	NIC	ENSMUSG00000050312.13	novel	3813	6	NA	NA	-26	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	11.9660979437743	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	ATTAAA	-18	NA	62607102	62552806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_62555782_62589969_62590092_62591020_62591176_62606150_62606261_62607033
ENSMUSG00000050312.13_3	chr16	-	3551	6	FSM	ENSMUSG00000050312.13	ENSMUST00000143314.8	3565	6	14	0	3	0	multi-exon	TRUE	canonical	3	19	junction_4	5.49181208709839	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	ATTAAA	-18	NA	62607126	62552806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596747_62606150_62606261_62607033
ENSMUSG00000050312.13_5	chr16	-	3605	7	NIC	ENSMUSG00000050312.13	novel	3565	6	NA	NA	-2	0	combination_of_known_junctions	TRUE	canonical	1	1	junction_4	12.3917535302941	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	ATTAAA	-18	NA	62607142	62552806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_62555782_62589969_62590092_62591020_62591176_62592061_62592100_62596650_62596747_62606150_62606261_62607033
ENSMUSG00000050312.13_6	chr16	-	3666	5	NIC	ENSMUSG00000050312.13	novel	3813	6	NA	NA	19	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	13.1029576813787	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTTTATGATGCCTTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	62607110	62552813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596995_62607033
ENSMUSG00000050312.13_7	chr16	-	1951	1	ISM	ENSMUSG00000050312.13	ENSMUST00000063089.12	3813	6	52374	9	32720	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTCTTTATGATGCCTT	NA	False	NA	NA	False	ATTAAA	-9	NA	62554766	62552815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_62552800_62554800
ENSMUSG00000050323.15_0	chr4	-	1041	9	FSM	ENSMUSG00000050323.15	ENSMUST00000058183.9	1082	9	9	32	-7	-27	multi-exon	FALSE	canonical	0	0	junction_7	119.468549731718	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATTTACTTTTAGTTTA	-10	True	NA	-35	True	AAAAAG	-28	NA	11076195	11051076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073143_11073244_11075979
ENSMUSG00000050323.15_1	chr4	-	990	8	NIC	ENSMUSG00000050323.15	novel	1082	9	NA	NA	1	-29	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	146.340531024075	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGATTTACTTTTAGTT	-18	True	NA	-37	True	AAAAAG	-26	NA	11076203	11051078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11070199_11070323_11073143_11073244_11075979
ENSMUSG00000050323.15_21	chr4	-	941	9	NNC	ENSMUSG00000050323.15	novel	675	6	NA	NA	-7	-802	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	143.326550227095	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTGAGCGTCACAGCACA	-10	True	NA	NA	False	NA	NA	NA	11076195	11052014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_11052064_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073143_11073244_11075979
ENSMUSG00000050323.15_4	chr4	-	1032	9	FSM	ENSMUSG00000050323.15	ENSMUST00000126468.8	863	9	-33	-136	1	-27	multi-exon	TRUE	canonical	3	35	junction_7	109.001146782958	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATTTACTTTTAGTTTA	3	True	NA	-35	True	AAAAAG	-28	NA	11076182	11051076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073139_11073244_11075979
ENSMUSG00000050328.3_0	chr15	+	2762	2	NNC	ENSMUSG00000050328.3	novel	1031	2	NA	NA	-4775	2245	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGATGTTTTGAGAACCA	NA	False	NA	20	True	ATTAAA	-17	NA	102840416	102849289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_102840603_102846713
ENSMUSG00000050328.3_3	chr15	+	3199	2	FSM	ENSMUSG00000050328.3	ENSMUST00000055562.3	1031	2	71	-2239	71	2239	multi-exon	FALSE	canonical	3	24	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGATGTGATGTTTTGA	NA	False	NA	14	True	ATTAAA	-11	NA	102845262	102849283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102845892_102846713
ENSMUSG00000050332.8_0	chrX	-	3916	1	ISM	ENSMUSG00000050332.8	ENSMUST00000084535.6	8496	2	20634	5	20634	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACTAAAGTGTTTTCTT	NA	False	NA	NA	False	AATAAA	-25	NA	94467844	94463928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_94463900_94467800
ENSMUSG00000050332.8_1	chrX	-	8443	2	FSM	ENSMUSG00000050332.8	ENSMUST00000084535.6	8496	2	48	5	48	-5	multi-exon	FALSE	canonical	3	18	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACTAAAGTGTTTTCTT	NA	False	NA	NA	False	AATAAA	-25	NA	94488430	94463928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_94472205_94488263
ENSMUSG00000050335.18_1	chr14	+	976	6	FSM	ENSMUSG00000050335.18	ENSMUST00000150290.9	1298	6	28	294	1	0	multi-exon	FALSE	canonical	3	42	junction_1	20.2286924935845	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATACCCATCGCTTTGGGG	NA	False	NA	1	True	AATAAA	-14	NA	47611373	47623251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_47611437_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
ENSMUSG00000050335.18_2	chr14	+	951	6	FSM	ENSMUSG00000050335.18	ENSMUST00000142734.8	1419	6	105	363	2	3	multi-exon	FALSE	canonical	3	33	junction_1	23.7941169199447	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCATCGCTTTGGGGGTT	NA	False	NA	4	True	AATAAA	-17	NA	47611374	47623254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_47611410_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
ENSMUSG00000050335.18_6	chr14	+	1054	7	NIC	ENSMUSG00000050335.18	novel	646	5	NA	NA	84	0	combination_of_known_junctions	TRUE	canonical	2	5	junction_1	41.1055551801294	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATACCCATCGCTTTGGGG	NA	False	NA	1	True	AATAAA	-14	NA	47605291	47623251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_47605310_47605702_47605826_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
ENSMUSG00000050357.10_0	chr8	+	4483	38	NIC	ENSMUSG00000050357.10	novel	4194	39	NA	NA	-325	1	combination_of_known_junctions	TRUE	canonical	3	15	junction_36	9.80481538199191	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAACAGCGTGGAATAC	NA	False	NA	NA	False	ATTAAA	-8	NA	106412580	106424820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106412946_106413191_106413284_106413377_106413429_106414000_106414064_106414184_106414310_106414415_106414508_106414701_106414773_106414889_106414964_106415096_106415173_106415255_106415345_106415426_106415522_106415595_106415683_106415767_106415881_106415975_106416054_106416183_106416261_106416355_106416461_106416630_106416701_106416814_106416897_106417009_106417107_106417188_106417247_106417378_106417552_106417714_106417878_106417958_106418058_106418932_106419062_106419148_106419263_106419434_106419596_106419669_106419758_106419887_106420029_106420156_106420224_106420645_106420882_106421656_106421758_106421839_106422201_106422283_106422407_106423492_106423530_106423655_106423728_106423848_106424071_106424499_106424578_106424662
ENSMUSG00000050357.10_1	chr8	+	4381	39	FSM	ENSMUSG00000050357.10	ENSMUST00000213019.2	4194	39	-142	-45	-142	1	multi-exon	FALSE	canonical	3	28	junction_20	8.5824984578148	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAACAGCGTGGAATAC	NA	False	NA	NA	False	ATTAAA	-8	NA	106412763	106424820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106412946_106413191_106413284_106413377_106413429_106414000_106414064_106414184_106414310_106414415_106414508_106414701_106414773_106414889_106414964_106415096_106415173_106415255_106415345_106415426_106415522_106415595_106415683_106415767_106415881_106415975_106416054_106416183_106416261_106416355_106416461_106416630_106416701_106416814_106416897_106417009_106417107_106417188_106417247_106417378_106417552_106417714_106417878_106417958_106418058_106418932_106419062_106419148_106419263_106419434_106419596_106419669_106419758_106419887_106420029_106420156_106420224_106420645_106420882_106421656_106421758_106421839_106422201_106422283_106422407_106423492_106423530_106423655_106423728_106423848_106424071_106424192_106424274_106424499_106424578_106424662
ENSMUSG00000050357.10_12	chr8	+	4414	38	NIC	ENSMUSG00000050357.10	novel	4194	39	NA	NA	-97	-3	intron_retention	FALSE	canonical	3	28	junction_19	8.69766515271993	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAATGAAACAGCGTGGA	NA	False	NA	NA	False	ATTAAA	-4	NA	106412808	106424816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106412946_106413191_106413284_106413377_106413429_106414000_106414064_106414184_106414310_106414415_106414508_106414701_106414773_106414889_106414964_106415096_106415173_106415255_106415522_106415595_106415683_106415767_106415881_106415975_106416054_106416183_106416261_106416355_106416461_106416630_106416701_106416814_106416897_106417009_106417107_106417188_106417247_106417378_106417552_106417714_106417878_106417958_106418058_106418932_106419062_106419148_106419263_106419434_106419596_106419669_106419758_106419887_106420029_106420156_106420224_106420645_106420882_106421656_106421758_106421839_106422201_106422283_106422407_106423492_106423530_106423655_106423728_106423848_106424071_106424192_106424274_106424499_106424578_106424662
ENSMUSG00000050357.10_28	chr8	+	1552	10	ISM	ENSMUSG00000050357.10	ENSMUST00000213019.2	4194	39	7661	-49	-1129	5	3prime_fragment	FALSE	canonical	3	41	junction_7	5.83306877706964	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGCGTGGAATACTGTC	5160	False	NA	NA	False	ATTAAA	-12	NA	106420566	106424824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_106420882_106421656_106421758_106421839_106422201_106422283_106422407_106423492_106423530_106423655_106423728_106423848_106424071_106424192_106424274_106424499_106424578_106424662
ENSMUSG00000050373.14_0	chr2	+	1526	3	FSM	ENSMUSG00000050373.14	ENSMUST00000056181.7	2590	3	24	1040	-2	146	multi-exon	FALSE	canonical	3	13	junction_2	6.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTAGCAATCTCTTTAT	NA	False	NA	NA	False	ATTAAA	-14	NA	164627934	164634690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164628245_164628617_164628776_164633632
ENSMUSG00000050373.14_1	chr2	+	1504	3	FSM	ENSMUSG00000050373.14	ENSMUST00000172577.8	1825	3	42	279	16	149	multi-exon	FALSE	canonical	3	11	junction_2	7.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCAATCTCTTTATTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	164627952	164634693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164628245_164628617_164628769_164633632
ENSMUSG00000050379.16_0	chrX	-	2368	10	FSM	ENSMUSG00000050379.16	ENSMUST00000060474.14	3457	10	162	927	-3	-927	multi-exon	TRUE	canonical	3	7	junction_1	15.297865581774	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTCAGTGGCTCCATG	NA	False	NA	NA	False	AATAAA	-9	NA	36253147	36175905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36176908_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ENSMUSG00000050379.16_12	chrX	-	2049	10	NNC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	-3	-805	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	16.9538225414044	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCCTAGAGTCTTGATT	NA	False	NA	NA	False	AATAAA	-14	NA	36253147	36179488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205734_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ENSMUSG00000050379.16_13	chrX	-	2158	11	FSM	ENSMUSG00000050379.16	ENSMUST00000053456.11	4673	11	128	2387	-37	-802	multi-exon	FALSE	canonical	2	7	junction_2	18.537529500988	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTAGAGTCTTGATTCAT	NA	False	NA	NA	False	AATAAA	-17	NA	36253181	36179485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36180199_36184021_36184067_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ENSMUSG00000050379.16_3	chrX	-	3268	10	FSM	ENSMUSG00000050379.16	ENSMUST00000115239.10	1845	10	162	-1585	-3	0	multi-exon	FALSE	canonical	3	5	junction_1	15.8869462681912	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGTGTGTGTGGTGTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	36253147	36177098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36179001_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ENSMUSG00000050379.16_4	chrX	-	3641	5	NIC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	55060	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	14.3069039278245	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGTGTGTGTGGTGTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	36198084	36177098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036
ENSMUSG00000050379.16_6	chrX	-	2077	10	NIC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	-3	-804	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	11.2940495640649	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCTAGAGTCTTGATTC	NA	False	NA	NA	False	AATAAA	-15	NA	36253147	36179487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ENSMUSG00000050379.16_8	chrX	-	2094	11	NNC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	-3	-805	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	21.2388794431345	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCCTAGAGTCTTGATT	NA	False	NA	NA	False	AATAAA	-14	NA	36253147	36179488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_36180199_36184021_36184067_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205734_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
ENSMUSG00000050379.16_9	chrX	-	1843	8	NIC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	22705	-802	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	11.8528391501095	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTAGAGTCTTGATTCAT	NA	False	NA	NA	False	AATAAA	-17	NA	36230439	36179485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248
ENSMUSG00000050382.15_1	chr7	-	4571	19	FSM	ENSMUSG00000050382.15	ENSMUST00000183846.8	4577	19	5	1	5	0	multi-exon	FALSE	canonical	3	29	junction_12	9.36634374031449	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGGCTTACATCTTAAA	NA	False	NA	-1	True	AATAAA	-14	NA	79365463	79347846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79348664_79348897_79349045_79349134_79349334_79349929_79350137_79350696_79350913_79351853_79352031_79352200_79352327_79352526_79352725_79354374_79354578_79356483_79356637_79356736_79356853_79357267_79357426_79358169_79358389_79358913_79359031_79359792_79360313_79360450_79360845_79361160_79361362_79363578_79363931_79365412
ENSMUSG00000050382.15_17	chr7	-	4559	19	FSM	ENSMUSG00000050382.15	ENSMUST00000184137.2	4093	19	-37	-429	14	0	multi-exon	FALSE	canonical	3	10	junction_6	12.416262732679	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGGCTTACATCTTAAA	NA	False	NA	-1	True	AATAAA	-14	NA	79365454	79347846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79348664_79348897_79349045_79349134_79349334_79349929_79350137_79350696_79350913_79351853_79352028_79352200_79352327_79352526_79352725_79354374_79354578_79356483_79356637_79356736_79356853_79357267_79357426_79358169_79358389_79358913_79359031_79359792_79360313_79360450_79360845_79361160_79361362_79363578_79363931_79365412
ENSMUSG00000050382.15_3	chr7	-	4568	19	NNC	ENSMUSG00000050382.15	novel	4577	19	NA	NA	5	0	at_least_one_novel_splicesite	TRUE	canonical	3	21	junction_12	10.3147981913557	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGGCTTACATCTTAAA	NA	False	NA	-1	True	AATAAA	-14	NA	79365463	79347846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_79348664_79348897_79349045_79349134_79349334_79349929_79350137_79350696_79350913_79351853_79352031_79352200_79352327_79352526_79352725_79354374_79354578_79356483_79356637_79356736_79356853_79357267_79357423_79358169_79358389_79358913_79359031_79359792_79360313_79360450_79360845_79361160_79361362_79363578_79363931_79365412
ENSMUSG00000050390.13_0	chr4	-	5184	7	FSM	ENSMUSG00000050390.13	ENSMUST00000052602.6	5187	7	-5	8	-5	-8	multi-exon	FALSE	canonical	3	145	junction_6	42.0713679359253	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTTGGCTGTGACTGCT	NA	False	NA	-8	True	ATTAAA	-20	NA	129142241	129113378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129115271_129115607_129118110_129118190_129118305_129119144_129119266_129119499_129119556_129119635_129119807_129141913
ENSMUSG00000050390.13_1	chr4	-	5070	7	FSM	ENSMUSG00000050390.13	ENSMUST00000097873.10	5033	7	-44	7	-44	-7	multi-exon	FALSE	canonical	3	123	junction_6	50.045534821356	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGGCTGTGACTGCTG	NA	False	NA	-7	True	ATTAAA	-21	NA	129133011	129113377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129115271_129115607_129118110_129118190_129118305_129119144_129119266_129119499_129119556_129119635_129119807_129132798
ENSMUSG00000050390.13_11	chr4	-	4988	7	FSM	ENSMUSG00000050390.13	ENSMUST00000106051.8	5049	7	50	11	50	-11	multi-exon	FALSE	canonical	3	23	junction_6	86.8210164009204	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAAACTTGGCTGTGACT	0	True	NA	-11	True	ATTAAA	-17	NA	129121654	129113381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129115271_129115607_129118110_129118190_129118305_129119144_129119266_129119499_129119556_129119635_129119807_129121519
ENSMUSG00000050390.13_2	chr4	-	3302	2	ISM	ENSMUSG00000050390.13	ENSMUST00000106051.8	5049	7	4684	11	4253	-11	3prime_fragment	FALSE	canonical	3	262	junction_1	0	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAAACTTGGCTGTGACT	5059	False	NA	-11	True	ATTAAA	-17	NA	129117020	129113381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129115271_129115607
ENSMUSG00000050390.13_4	chr4	-	1494	1	ISM	ENSMUSG00000050390.13	ENSMUST00000106051.8	5049	7	6833	7	6402	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGGCTGTGACTGCTG	7208	False	NA	-7	True	ATTAAA	-21	NA	129114871	129113377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129113400_129114900
ENSMUSG00000050394.15_0	chrX	-	1986	4	FSM	ENSMUSG00000050394.15	ENSMUST00000052431.12	2024	4	38	0	-18	0	multi-exon	FALSE	canonical	1	3	junction_3	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGGGGCACTGGCCTCC	NA	False	NA	NA	False	AATAAA	-28	NA	133652128	133649211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133650975_133651299_133651380_133651689_133651783_133652078
ENSMUSG00000050410.16_0	chr17	-	1595	4	NIC	ENSMUSG00000050410.16	novel	1665	4	NA	NA	13	-2	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	19.7989898732233	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCACTTGCGTTGAATCTA	9350	False	NA	-10	True	AATAAA	-15	NA	35827704	35823635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35824082_35825370_35825918_35826774_35827328_35827655
ENSMUSG00000050410.16_1	chr17	-	1802	3	ISM	ENSMUSG00000050410.16	ENSMUST00000160885.2	1732	4	102	-1	102	1	3prime_fragment	FALSE	canonical	3	75	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGCGTTGAATCTAAGT	9474	False	NA	-7	True	AATAAA	-18	NA	35827580	35823632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35824082_35825370_35825918_35826774
ENSMUSG00000050410.16_13	chr17	-	4064	1	FSM	ENSMUSG00000118589.2	ENSMUST00000239282.2	67	1	-3137	-860	-3137	860	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCACTTGCGTTGAATCTA	9355	False	NA	-10	True	AATAAA	-15	NA	35827699	35823635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35823600_35827700
ENSMUSG00000050410.16_2	chr17	-	1640	4	FSM	ENSMUSG00000050410.16	ENSMUST00000161012.8	1665	4	23	2	-16	1	multi-exon	FALSE	canonical	3	29	junction_3	21.6846079563875	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGCGTTGAATCTAAGT	9356	False	NA	-7	True	AATAAA	-18	NA	35827698	35823632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35824082_35825370_35825918_35826774_35827328_35827607
ENSMUSG00000050410.16_5	chr17	-	2779	2	ISM	ENSMUSG00000050410.16	ENSMUST00000160885.2	1732	4	-17	-2	-17	-1	intron_retention	FALSE	canonical	3	75	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGCGTTGAATCTAAGTC	9355	False	NA	-6	True	AATAAA	-19	NA	35827699	35823631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35824082_35825370
ENSMUSG00000050410.16_8	chr17	-	1751	4	FSM	ENSMUSG00000050410.16	ENSMUST00000160885.2	1732	4	-17	-2	-17	-1	multi-exon	FALSE	canonical	2	5	junction_3	32.9983164553722	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGCGTTGAATCTAAGTC	9355	False	NA	-6	True	AATAAA	-19	NA	35827699	35823631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35824082_35825370_35825918_35826774_35827437_35827607
ENSMUSG00000050410.16_9	chr17	-	3193	2	FSM	ENSMUSG00000118589.2_ENSMUSG00000050410.16	ENSMUST00000162683.2	873	2	-241	-2079	-3	-2	multi-exon	FALSE	canonical	3	75	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCACTTGCGTTGAATCTA	9369	False	NA	-10	True	AATAAA	-15	NA	35827685	35823635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35825918_35826774
ENSMUSG00000050423.12_0	chr13	+	2143	2	FSM	ENSMUSG00000050423.12	ENSMUST00000132661.2	2361	2	26	192	26	-192	multi-exon	FALSE	canonical	1	4	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTCCTCTCTGTGTTTC	NA	False	NA	NA	False	AGTAAA	-13	NA	36151861	36154179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_36151966_36152140
ENSMUSG00000050424.10_0	chrX	-	2597	5	NNC	ENSMUSG00000050424.10	novel	2287	2	NA	NA	-2592	-2	at_least_one_novel_splicesite	FALSE	canonical	1	35	junction_1	20.9568008054665	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTATGTTCTTTCTG	NA	False	NA	-9	True	AATAAA	-12	NA	72083301	72077595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72077934_72078769_72080775_72080892_72080952_72081548_72081672_72083229
ENSMUSG00000050424.10_1	chrX	-	1540	2	FSM	ENSMUSG00000050424.10	ENSMUST00000152209.2	1280	2	-261	1	-261	-1	multi-exon	FALSE	canonical	1	35	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTATGTTCTTTCTGG	NA	False	NA	-8	True	AATAAA	-13	NA	72079970	72077594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72077934_72078769
ENSMUSG00000050424.10_3	chrX	-	1276	1	FSM	ENSMUSG00000050424.10	ENSMUST00000051569.7	2785	1	1841	-332	841	1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTATGTTCTTTCTGGCG	NA	False	NA	-6	True	AATAAA	-15	NA	72078868	72077592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72077600_72078900
ENSMUSG00000050424.10_5	chrX	-	3432	4	NNC	ENSMUSG00000050424.10	novel	2287	2	NA	NA	-2590	-1	intron_retention	FALSE	canonical	3	77	junction_3	4.18993502999218	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTATGTTCTTTCTGG	NA	False	NA	-8	True	AATAAA	-13	NA	72083299	72077594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72080775_72080892_72080952_72081548_72081672_72083229
ENSMUSG00000050428.8_0	chr7	+	2932	2	FSM	ENSMUSG00000050428.8	ENSMUST00000053109.5	4873	2	17	1924	17	436	multi-exon	FALSE	canonical	3	58	junction_1	0	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGCTGTGCCCAGCCTGGC	9354	False	NA	20	True	TATAAA	-13	NA	18853800	18872173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18853862_18869302
ENSMUSG00000050428.8_3	chr7	+	1996	1	ISM	ENSMUSG00000050428.8	ENSMUST00000053109.5	4873	2	15964	2354	4130	6	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTACCAGAGTCTCTAGG	NA	False	NA	18	True	AATAAA	-24	NA	18869747	18871743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_18869700_18871700
ENSMUSG00000050435.3_0	chrX	+	770	2	FSM	ENSMUSG00000050435.3	ENSMUST00000059509.3	743	2	-25	-2	-25	2	multi-exon	FALSE	canonical	3	30	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTCATTTTTTTTTTCT	NA	False	NA	3	True	AATAAA	-18	NA	113814683	113815640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_113814900_113815086
ENSMUSG00000050439.8_1	chr15	-	2691	6	NNC	ENSMUSG00000050439.8	novel	2236	7	NA	NA	4	-20612	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	3.24961536185438	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGAATCTTTGTTTTG	NA	False	NA	NA	False	AATAAA	-11	NA	80449353	80357052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_80358675_80393382_80393510_80398262_80398382_80418714_80418949_80444204_80444702_80449261
ENSMUSG00000050447.16_0	chr2	+	3461	5	FSM	ENSMUSG00000050447.16	ENSMUST00000112712.10	3495	5	24	10	-9	-4	multi-exon	FALSE	canonical	1	1	junction_4	1.73205080756888	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTCGGCTTCTTCCTG	NA	False	NA	NA	False	AATAAA	-14	NA	49956464	50083571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_49956597_50055480_50055670_50063612_50063712_50078722_50078854_50080661
ENSMUSG00000050471.18_0	chr9	-	1610	8	FSM	ENSMUSG00000050471.18	ENSMUST00000059057.14	1860	8	35	215	-3	0	multi-exon	FALSE	canonical	3	113	junction_5	33.1724006256	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6399	False	NA	-20	True	ATTAAA	-21	NA	35179066	35128530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
ENSMUSG00000050471.18_10	chr9	-	1508	7	NIC	ENSMUSG00000050471.18	novel	1860	8	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	64.4222183894829	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6408	False	NA	-20	True	ATTAAA	-21	NA	35179057	35128530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35179018
ENSMUSG00000050471.18_5	chr9	-	1611	8	NNC	ENSMUSG00000050471.18	novel	1860	8	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_2	45.5246064883417	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6395	False	NA	-20	True	ATTAAA	-21	NA	35179070	35128530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_35129044_35129224_35129282_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
ENSMUSG00000050471.18_6	chr9	-	1382	7	FSM	ENSMUSG00000050471.18	ENSMUST00000063782.12	1662	7	10	270	-3	0	multi-exon	FALSE	canonical	3	54	junction_4	50.0954644209988	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6399	False	NA	-20	True	ATTAAA	-21	NA	35179066	35128530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526_35146780_35155909_35156003_35179018
ENSMUSG00000050490.8_0	chr10	+	947	1	FSM	ENSMUSG00000050490.8	ENSMUST00000079684.7	952	1	4	1	4	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAATAAAAAAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85149355	85150302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_85149400_85150300
ENSMUSG00000050530.15_0	chr2	+	4134	8	FSM	ENSMUSG00000050530.15	ENSMUST00000115099.9	4149	8	1	14	1	-14	multi-exon	TRUE	canonical	3	29	junction_6	7.31785627135183	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGGAAAAAAATATGTG	887	False	NA	NA	False	AATAAA	-6	NA	3119419	3228829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_3119690_3179272_3179501_3187459_3187553_3198313_3198473_3203581_3203759_3221289_3221407_3224506_3224622_3225854
ENSMUSG00000050530.15_4	chr2	+	4018	7	FSM	ENSMUSG00000050530.15	ENSMUST00000091505.11	3449	7	-29	-540	2	-14	multi-exon	FALSE	canonical	2	5	junction_6	16.2241246981839	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGGAAAAAAATATGTG	888	False	NA	NA	False	AATAAA	-6	NA	3119420	3228829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_3119690_3179272_3179501_3187459_3187553_3198313_3198473_3203581_3203759_3221289_3221407_3225854
ENSMUSG00000050530.15_6	chr2	+	2217	1	ISM	ENSMUSG00000050530.15	ENSMUST00000115099.9	4149	8	107194	14	106891	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGGAAAAAAATATGTG	NA	False	NA	NA	False	AATAAA	-6	NA	3226612	3228829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_3226600_3228800
ENSMUSG00000050538.9_0	chr11	+	1125	2	FSM	ENSMUSG00000050538.9	ENSMUST00000170806.2	1118	2	-16	9	3	-9	multi-exon	FALSE	canonical	3	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAACAAGAAAAAAAG	5313	False	NA	NA	False	NA	NA	NA	97732128	97733860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_97732403_97733009
ENSMUSG00000050538.9_1	chr11	+	1102	2	FSM	ENSMUSG00000050538.9	ENSMUST00000155954.3	2181	2	14	1065	-1	-9	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAACAAGAAAAAAAG	5324	False	NA	NA	False	NA	NA	NA	97732139	97733860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_97732391_97733009
ENSMUSG00000050545.11_1	chr12	-	3110	2	NIC	ENSMUSG00000050545.11	novel	386	3	NA	NA	-533	0	intron_retention	FALSE	canonical	3	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTTCAGTGTCTGTGAT	NA	False	NA	-4	True	AATAAA	-10	NA	4796263	4789891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_4791208_4794469
ENSMUSG00000050545.11_11	chr12	-	5829	8	NIC	ENSMUSG00000050545.11	novel	2851	7	NA	NA	87	1	intron_retention	FALSE	canonical	3	6	junction_1	5.96930926165034	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCAGTGTCTGTGATGAT	NA	False	NA	-1	True	AATAAA	-13	NA	4819145	4789888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_4791208_4794469_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
ENSMUSG00000050549.9_0	chr3	-	1459	2	FSM	ENSMUSG00000050549.9	ENSMUST00000199273.2	2234	2	22	753	-14	-131	multi-exon	FALSE	canonical	3	68	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTCAGTAGCCACTTGT	2596	False	NA	NA	False	AATAAA	-18	NA	127689951	127663459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_127664650_127689682
ENSMUSG00000050549.9_2	chr3	-	1608	3	FSM	ENSMUSG00000050549.9	ENSMUST00000057198.9	1607	3	-15	14	-15	-14	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAAAAATGACTTTGA	2595	False	NA	NA	False	AATACA	-6	NA	127689952	127663342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_127664650_127681603_127681635_127689682
ENSMUSG00000050550.8_0	chr4	-	2078	1	FSM	ENSMUSG00000050550.8	ENSMUST00000121594.2	1478	1	-121	-479	-121	479	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATACTTTCATACTTTAAA	NA	False	NA	91	True	AATAAA	-2	NA	18845800	18843722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_18843700_18845800
ENSMUSG00000050552.9_0	chr5	+	585	4	FSM	ENSMUSG00000050552.9	ENSMUST00000062067.8	877	4	281	11	-68	-11	multi-exon	FALSE	canonical	3	258	junction_1	67.9084350839832	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGGGCTCAGGATGTGTG	NA	False	NA	24	True	AATAAA	-16	NA	138254024	138257646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138254066_138254514_138254596_138256916_138257035_138257301
ENSMUSG00000050552.9_1	chr5	+	545	3	FSM	ENSMUSG00000050552.9	ENSMUST00000160157.2	980	3	421	14	421	-11	multi-exon	FALSE	canonical	3	386	junction_1	14	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGGGCTCAGGATGTGTG	NA	False	NA	24	True	AATAAA	-16	NA	138254513	138257646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138254596_138256916_138257035_138257301
ENSMUSG00000050555.10_0	chr9	-	1667	4	FSM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	299	7	-2	-7	multi-exon	FALSE	canonical	3	233	junction_2	23.2808934536456	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAGGAGTTTGAACCT	NA	False	NA	44	True	ATTAAA	-10	NA	35481395	35472122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_35473401_35475358_35475474_35479750_35479802_35481172
ENSMUSG00000050555.10_3	chr9	-	953	1	ISM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	8619	7	8318	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAGGAGTTTGAACCT	NA	False	NA	44	True	ATTAAA	-10	NA	35473075	35472122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_35472100_35473100
ENSMUSG00000050555.10_4	chr9	-	3022	3	ISM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	315	7	14	-7	intron_retention	FALSE	canonical	3	233	junction_2	13.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAGGAGTTTGAACCT	NA	False	NA	44	True	ATTAAA	-10	NA	35481379	35472122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_35473401_35475358_35475474_35479750
ENSMUSG00000050556.10_0	chr2	-	4040	3	FSM	ENSMUSG00000050556.10	ENSMUST00000059826.10	4015	3	-6	-19	-6	19	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTTAATAAAAAAAGCACT	NA	False	NA	NA	False	NA	NA	NA	167032081	166945312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_166948280_167029976_167030709_167031740
ENSMUSG00000050556.10_1	chr2	-	2139	1	ISM	ENSMUSG00000050556.10	ENSMUST00000207917.2	11153	2	83275	7436	-3717	7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAATAATAATAAGTTAAT	3439	False	NA	NA	False	NA	NA	NA	166947463	166945324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_166945300_166947500
ENSMUSG00000050565.17_0	chr1	+	2480	3	FSM	ENSMUSG00000050565.17	ENSMUST00000111754.9	2491	3	6	5	6	-5	multi-exon	FALSE	canonical	3	72	junction_1	87	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTCAGCAGGTTTTA	NA	False	NA	-2	True	AATAAA	-10	NA	155911477	155929270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_155911667_155916820_155916881_155927039
ENSMUSG00000050565.17_1	chr1	+	2655	3	NIC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	2	-5	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	105	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTCAGCAGGTTTTA	NA	False	NA	-2	True	AATAAA	-10	NA	155911473	155929270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_155911838_155916820_155916881_155927039
ENSMUSG00000050565.17_11	chr1	+	1687	2	NIC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	12	-732	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTTCTAATTTTCTCC	NA	False	NA	9	True	AATAAA	-13	NA	155911483	155928543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_155911667_155927039
ENSMUSG00000050565.17_19	chr1	+	2476	2	FSM	ENSMUSG00000050565.17	ENSMUST00000131359.2	621	2	0	-1855	0	-5	multi-exon	FALSE	canonical	3	246	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTCAGCAGGTTTTA	NA	False	NA	-2	True	AATAAA	-10	NA	155916635	155929270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_155916881_155927039
ENSMUSG00000050565.17_20	chr1	+	2341	2	FSM	ENSMUSG00000050565.17	ENSMUST00000065648.15	2529	2	-24	212	3	-5	multi-exon	FALSE	canonical	3	145	junction_1	0	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTCAGCAGGTTTTA	NA	False	NA	-2	True	AATAAA	-10	NA	155916638	155929270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_155916749_155927039
ENSMUSG00000050565.17_21	chr1	+	5084	5	FSM	ENSMUSG00000050565.17	ENSMUST00000060404.5	5135	5	3	48	3	-48	multi-exon	FALSE	canonical	3	13	junction_1	13.683932183404	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGACTGATTTTTTACTAA	NA	False	NA	3	True	AATAAA	-15	NA	155916638	155944559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_155916749_155935156_155935334_155937333_155937916_155939338_155939441_155940446
ENSMUSG00000050565.17_23	chr1	+	2403	3	FSM	ENSMUSG00000050565.17	ENSMUST00000097526.3	2589	3	-26	212	1	-5	multi-exon	FALSE	canonical	3	163	junction_1	41.5	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTCAGCAGGTTTTA	NA	False	NA	-2	True	AATAAA	-10	NA	155916636	155929270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_155916749_155916820_155916881_155927039
ENSMUSG00000050565.17_34	chr1	+	1589	1	ISM	ENSMUSG00000050565.17	ENSMUST00000111754.9	2491	3	16210	5	11019	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTCAGCAGGTTTTA	NA	False	NA	-2	True	AATAAA	-10	NA	155927681	155929270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_155927700_155929300
ENSMUSG00000050565.17_39	chr1	+	2639	1	ISM	ENSMUSG00000050565.17	ENSMUST00000111757.10	6118	7	30772	48	2962	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGACTGATTTTTTACTAA	NA	False	NA	3	True	AATAAA	-15	NA	155941920	155944559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_155941900_155944600
ENSMUSG00000050567.17_0	chr11	-	5538	5	FSM	ENSMUSG00000050567.17	ENSMUST00000059458.5	5528	5	-17	7	-17	-7	multi-exon	FALSE	canonical	3	42	junction_4	8.0156097709407	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAATCACAAGCATGTT	NA	False	NA	-15	True	AATAAA	-15	NA	50183155	50146467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_50149656_50151803_50151901_50154076_50154311_50156421_50157838_50182552
ENSMUSG00000050567.17_1	chr11	-	2315	1	ISM	ENSMUSG00000050567.17	ENSMUST00000135868.8	4924	4	33849	7	33849	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAATCACAAGCATGTT	NA	False	NA	-15	True	AATAAA	-15	NA	50148782	50146467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_50146500_50148800
ENSMUSG00000050567.17_2	chr11	-	4353	4	ISM	ENSMUSG00000050567.17	ENSMUST00000059458.5	5528	5	25883	7	25376	-7	3prime_fragment	FALSE	canonical	3	46	junction_2	7.78888096369861	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAATCACAAGCATGTT	NA	False	NA	-15	True	AATAAA	-15	NA	50157255	50146467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_50149656_50151803_50151901_50154076_50154311_50156421
ENSMUSG00000050592.9_0	chr2	-	4017	2	FSM	ENSMUSG00000050592.9	ENSMUST00000056406.7	4107	2	84	6	84	-6	multi-exon	FALSE	canonical	3	11	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCACCCTTGGCTCTGGT	NA	False	NA	NA	False	AATAAA	-29	NA	31973711	31956884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_31959786_31972595
ENSMUSG00000050592.9_1	chr2	-	2933	2	NNC	ENSMUSG00000050592.9	novel	4107	2	NA	NA	4937	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCACCCTTGGCTCTGGT	NA	False	NA	NA	False	AATAAA	-29	NA	31964427	31956884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_31959786_31964395
ENSMUSG00000050592.9_2	chr2	-	3063	2	FSM	ENSMUSG00000050592.9	ENSMUST00000130178.2	525	2	9	-2547	9	-6	multi-exon	TRUE	canonical	1	2	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCACCCTTGGCTCTGGT	NA	False	NA	NA	False	AATAAA	-29	NA	31969355	31956884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_31959786_31969193
ENSMUSG00000050592.9_3	chr2	-	4455	3	ISM	ENSMUSG00000050592.9	ENSMUST00000139629.2	3236	6	-65	16818	-65	-6	5prime_fragment	FALSE	canonical	2	4	junction_2	3.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCACCCTTGGCTCTGGT	NA	False	NA	NA	False	AATAAA	-29	NA	31974746	31956884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_31959786_31972595_31973621_31974217
ENSMUSG00000050592.9_4	chr2	-	3972	3	NIC	ENSMUSG00000050592.9	novel	3236	6	NA	NA	-15	-6	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCACCCTTGGCTCTGGT	NA	False	NA	NA	False	AATAAA	-29	NA	31974884	31956884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_31959786_31972595_31973621_31974838
ENSMUSG00000050592.9_5	chr2	-	2553	1	NIC	ENSMUSG00000050592.9	novel	3236	6	NA	NA	9933	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGGCTCTGGTGGCAAT	NA	False	NA	NA	False	AATAAA	-35	NA	31959431	31956878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_31956900_31959400
ENSMUSG00000050605.18_0	chr7	-	2289	7	FSM	ENSMUSG00000050605.18	ENSMUST00000077780.14	2480	7	177	14	-97	4	multi-exon	FALSE	canonical	3	35	junction_1	4.81028989655394	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGACTCGTATCATGT	NA	False	NA	-7	True	TATAAA	-9	NA	23998923	23990477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23996997_23997164_23997698_23997801_23998617
ENSMUSG00000050605.18_1	chr7	-	3045	6	NIC	ENSMUSG00000050605.18	novel	2480	7	NA	NA	-45	6	intron_retention	FALSE	canonical	3	35	junction_1	5.03587132480567	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGACTCGTATCATGTGG	NA	False	NA	-5	True	TATAAA	-11	NA	23998780	23990475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_23991930_23992769_23992860_23994379_23995450_23996997_23997164_23997698_23997801_23998617
ENSMUSG00000050605.18_6	chr7	-	1978	6	NIC	ENSMUSG00000050605.18	novel	2480	7	NA	NA	-45	2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	15.3310143173894	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAAAAGACTCGTATCAT	NA	False	NA	-9	True	TATAAA	-7	NA	23998780	23990479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23997698_23997801_23998617
ENSMUSG00000050605.18_7	chr7	-	2299	7	NNC	ENSMUSG00000050605.18	novel	2480	7	NA	NA	71	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	15.0711276581711	2	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAAAAGACTCGTATCAT	NA	False	NA	-9	True	TATAAA	-7	NA	23998991	23990479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23997053_23997164_23997698_23997801_23998617
ENSMUSG00000050608.12_1	chr4	-	488	4	FSM	ENSMUSG00000050608.12	ENSMUST00000143971.2	2549	4	86	1975	-33	2	multi-exon	FALSE	canonical	3	2580	junction_1	67.4553350167518	412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCAAGCAATGCCTTTAT	5265	False	NA	-18	True	AATAAA	-18	NA	138858338	138831099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858232
ENSMUSG00000050619.15_0	chr2	-	5830	4	NIC	ENSMUSG00000050619.15	novel	5072	5	NA	NA	3	109	combination_of_known_junctions	FALSE	canonical	2	2	junction_3	2.49443825784929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCTTGTTCTTTTACGT	NA	False	NA	NA	False	AATAAA	-14	NA	121001603	120988644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_120992031_120994227_120994684_120996524_120997200_121000290
ENSMUSG00000050619.15_1	chr2	-	5889	5	FSM	ENSMUSG00000050619.15	ENSMUST00000110661.9	5072	5	-841	24	16	-24	multi-exon	FALSE	canonical	2	4	junction_2	14.6372811683044	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAAGTGCTCTGTTTTTC	NA	False	NA	NA	False	AATAAA	-10	NA	121001590	120988777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120992031_120994227_120994684_120996524_120997200_120999679_120999885_121000290
ENSMUSG00000050619.15_4	chr2	-	2586	3	ISM	ENSMUSG00000050619.15	ENSMUST00000163766.8	3611	6	9	4949	9	-504	5prime_fragment	FALSE	canonical	3	33	junction_1	2	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATGTTTTTCATTA	NA	False	NA	NA	False	AATAAA	-14	NA	121001597	120996125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120997200_120999679_120999885_121000290
ENSMUSG00000050619.15_5	chr2	-	2384	2	FSM	ENSMUSG00000050619.15	ENSMUST00000146243.2	2894	2	6	504	6	-504	multi-exon	FALSE	canonical	2	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATGTTTTTCATTA	NA	False	NA	NA	False	AATAAA	-14	NA	121001600	120996125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120997200_121000290
ENSMUSG00000050619.15_7	chr2	-	1329	1	Genic_Genomic	ENSMUSG00000050619.15	novel	NA	NA	NA	NA	5470	637	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAGTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120989445	120988116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_120988100_120989400
ENSMUSG00000050621.8_0	chr9	-	340	1	FSM	ENSMUSG00000050621.8	ENSMUST00000053150.8	374	1	1	33	1	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	518	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	7275	False	NA	NA	False	AATAAA	-15	NA	114811806	114811466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_114811500_114811800
ENSMUSG00000050623.6_0	chr19	-	716	5	FSM	ENSMUSG00000050623.6	ENSMUST00000057716.6	784	5	61	7	2	0	multi-exon	FALSE	canonical	3	36	junction_4	4.76969600708473	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGAGTCAGTGCGTGGC	7451	False	NA	-6	True	ATTAAA	-15	NA	6902687	6899797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902475_6902659
ENSMUSG00000050627.14_1	chr9	-	3830	8	FSM	ENSMUSG00000050627.14	ENSMUST00000146623.8	4391	8	127	434	19	-434	multi-exon	FALSE	canonical	3	102	junction_4	10.5540397527222	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGGAGCCTATTTTTCC	NA	False	NA	-7	True	AATAAA	-20	NA	114762928	114728842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
ENSMUSG00000050627.14_2	chr9	-	1922	1	ISM	ENSMUSG00000050627.14	ENSMUST00000146623.8	4391	8	32719	6	7808	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTATAACTTGATTGTTG	NA	False	NA	NA	False	NA	NA	NA	114730336	114728414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_114728400_114730300
ENSMUSG00000050627.14_4	chr9	-	2824	9	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	32	-434	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	29.0376910239089	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGGAGCCTATTTTTCC	NA	False	NA	-7	True	AATAAA	-20	NA	114762915	114728842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_114730448_114731440_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
ENSMUSG00000050628.7_0	chr11	+	1444	3	FSM	ENSMUSG00000050628.7	ENSMUST00000057676.7	1482	3	34	4	34	-4	multi-exon	TRUE	canonical	3	1535	junction_2	51	1208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGTTTGTGTTTTTGTTT	NA	False	NA	32	True	TTTAAA	-25	NA	116324953	116329899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116325255_116325384_116325448_116328819
ENSMUSG00000050668.11_1	chr17	+	1099	9	NIC	ENSMUSG00000050668.11	novel	4134	10	NA	NA	-29	-9	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	40.2086355774478	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGAACAGTTACAAGTGA	8801	False	NA	-1	True	AATACA	-11	NA	79142966	79152778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_79143108_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
ENSMUSG00000050668.11_2	chr17	+	1199	10	FSM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	-21	2956	1	-6	multi-exon	FALSE	canonical	3	101	junction_6	15.3405779986718	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACAGTTACAAGTGATGT	8831	False	NA	2	True	AATACA	-14	NA	79142996	79152781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
ENSMUSG00000050671.13_1	chr12	-	2578	6	FSM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	-59	7	-59	-7	multi-exon	FALSE	canonical	3	77	junction_1	6.95701085237043	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATACAGTTTGATAAAGGA	7610	False	NA	-6	True	AATAAA	-14	NA	87346538	87325418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87326977_87329073_87329158_87329419_87329561_87331799_87332161_87333668_87333912_87346347
ENSMUSG00000050671.13_2	chr12	-	1996	4	ISM	ENSMUSG00000050671.13	ENSMUST00000051601.6	1350	5	1899	-1037	1835	-7	3prime_fragment	FALSE	canonical	3	77	junction_1	6.16441400296898	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATACAGTTTGATAAAGGA	NA	False	NA	-6	True	AATAAA	-14	NA	87332012	87325418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_87326977_87329073_87329158_87329419_87329561_87331799
ENSMUSG00000050671.13_23	chr12	-	945	2	ISM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	-37	7724	-37	-3942	5prime_fragment	FALSE	canonical	3	97	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTATCTGTCTGCTTG	7632	False	NA	NA	False	AAGAAA	-35	NA	87346516	87333135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_87333912_87346347
ENSMUSG00000050671.13_3	chr12	-	2699	6	NIC	ENSMUSG00000050671.13	novel	2526	6	NA	NA	-70	-7	combination_of_known_junctions	TRUE	canonical	3	13	junction_2	30.7310917476096	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATACAGTTTGATAAAGGA	7599	False	NA	-6	True	AATAAA	-14	NA	87346549	87325418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_87326977_87329073_87329268_87329419_87329561_87331799_87332161_87333668_87333912_87346347
ENSMUSG00000050671.13_7	chr12	-	2850	5	NIC	ENSMUSG00000050671.13	novel	2526	6	NA	NA	-69	-7	intron_retention	FALSE	canonical	3	77	junction_1	7.44983221287567	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATACAGTTTGATAAAGGA	7600	False	NA	-6	True	AATAAA	-14	NA	87346548	87325418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_87326977_87329073_87329561_87331799_87332161_87333668_87333912_87346347
ENSMUSG00000050677.3_0	chr5	+	2179	1	FSM	ENSMUSG00000050677.3	ENSMUST00000060100.3	3585	1	26	1380	26	-1380	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCACTGACCTGATTAGCT	NA	False	NA	NA	False	ATTAAA	-14	NA	36641957	36644136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_36642000_36644100
ENSMUSG00000050697.10_0	chr15	+	4256	9	FSM	ENSMUSG00000050697.10	ENSMUST00000228218.2	4618	9	-7	369	-7	-369	multi-exon	FALSE	canonical	3	109	junction_2	19.5316249964001	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGATTCTATTTTTTTC	NA	False	NA	2	True	AATAAA	-14	NA	5173365	5211004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_5173478_5190083_5190226_5194192_5194287_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
ENSMUSG00000050697.10_1	chr15	+	4160	8	NIC	ENSMUSG00000050697.10	novel	4655	9	NA	NA	-5	-369	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	45.007482371132	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGATTCTATTTTTTTC	NA	False	NA	2	True	AATAAA	-14	NA	5173367	5211004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_5173478_5190083_5190226_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
ENSMUSG00000050697.10_13	chr15	+	4032	4	ISM	ENSMUSG00000050697.10	ENSMUST00000228218.2	4618	9	30327	1	30327	-1	3prime_fragment	FALSE	canonical	3	154	junction_3	12.2836838484589	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTTACACAGTATTTCT	NA	False	NA	10	True	AATAAA	-19	NA	5203699	5211372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_5203914_5205966_5206454_5206559_5206687_5208168
ENSMUSG00000050697.10_14	chr15	+	3061	3	ISM	ENSMUSG00000050697.10	ENSMUST00000228218.2	4618	9	32982	370	32982	-370	3prime_fragment	FALSE	canonical	3	154	junction_2	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTGATTCTATTTTTTT	NA	False	NA	1	True	AATAAA	-13	NA	5206354	5211003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_5206454_5206559_5206687_5208168
ENSMUSG00000050697.10_15	chr15	+	1907	1	ISM	ENSMUSG00000050697.10	ENSMUST00000051186.9	4655	9	36104	27	36074	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAAGTTCGTTTTTCA	NA	False	NA	-9	True	NA	NA	NA	5209446	5211353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_5209400_5211400
ENSMUSG00000050697.10_22	chr15	+	3842	6	ISM	ENSMUSG00000050697.10	ENSMUST00000228218.2	4618	9	24748	363	24748	-363	3prime_fragment	FALSE	canonical	3	154	junction_5	9.76524449258696	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTATTTTTTTCTTAAGA	NA	False	NA	8	True	AATAAA	-20	NA	5198120	5211010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
ENSMUSG00000050700.12_0	chr2	-	4037	4	FSM	ENSMUSG00000050700.12	ENSMUST00000057169.5	3547	4	8	-498	-3	497	multi-exon	FALSE	canonical	2	5	junction_1	5.55777733351102	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGTAACTGTAGTTTTG	NA	False	NA	-7	True	NA	NA	NA	160754240	160747859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_160751237_160751526_160751751_160752661_160752785_160753927
ENSMUSG00000050700.12_1	chr2	-	3908	4	FSM	ENSMUSG00000050700.12	ENSMUST00000109454.8	3396	4	-15	-497	-4	497	multi-exon	FALSE	canonical	2	7	junction_1	4.64279609239471	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGTAACTGTAGTTTTG	NA	False	NA	-7	True	NA	NA	NA	160754252	160747859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_160751096_160751526_160751751_160752661_160752785_160753927
ENSMUSG00000050700.12_4	chr2	-	2287	1	Genic_Genomic	ENSMUSG00000050700.12	novel	NA	NA	NA	NA	4097	503	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTAGTTTTGCTACTG	NA	False	NA	-1	True	NA	NA	NA	160750140	160747853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_160747900_160750100
ENSMUSG00000050705.16_0	chr17	-	1219	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148721.8	1293	6	70	4	-49	2	multi-exon	FALSE	canonical	3	184	junction_5	90.4765162901402	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGCAGGTTTTCACGTC	NA	False	NA	-7	True	AATAAA	-15	NA	36208253	36203572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36208082
ENSMUSG00000050705.16_1	chr17	-	1104	6	NIC	ENSMUSG00000050705.16	novel	1193	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_5	147.212227752996	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAGGCAGGTTTTCACG	NA	False	NA	-9	True	AATAAA	-13	NA	36207994	36203574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207936
ENSMUSG00000050705.16_3	chr17	-	2075	5	FSM	ENSMUSG00000050705.16	ENSMUST00000146451.8	2081	5	10	-4	2	0	multi-exon	FALSE	canonical	3	307	junction_3	46.1756158594555	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAGGCAGGTTTTCACG	NA	False	NA	-9	True	AATAAA	-13	NA	36207993	36203574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562
ENSMUSG00000050705.16_4	chr17	-	1161	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148482.8	1193	6	26	6	9	0	multi-exon	FALSE	canonical	3	95	junction_5	123.227269709265	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAGGCAGGTTTTCACG	NA	False	NA	-9	True	AATAAA	-13	NA	36207986	36203574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207871
ENSMUSG00000050708.17_0	chr7	-	912	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	47	9	2	-8	multi-exon	TRUE	canonical	3	56898	junction_1	7359.57672393974	14398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACAGCAGCTGGTGTTTT	NA	False	NA	-28	True	AATAAA	-8	NA	45109261	45107376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
ENSMUSG00000050714.10_0	chr2	-	2828	1	ISM	ENSMUSG00000050714.10	ENSMUST00000067043.5	5267	2	8124	2	8123	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGTGGTGTCATTGACT	NA	False	NA	0	True	AATAAA	-12	NA	37325009	37322181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_37322200_37325000
ENSMUSG00000050714.10_1	chr2	-	5289	2	FSM	ENSMUSG00000050714.10	ENSMUST00000067043.5	5267	2	-24	2	-10	-2	multi-exon	FALSE	canonical	3	22	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGTGGTGTCATTGACT	NA	False	NA	0	True	AATAAA	-12	NA	37333157	37322181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_37327012_37332698
ENSMUSG00000050714.10_2	chr2	-	4897	2	FSM	ENSMUSG00000050714.10	ENSMUST00000102789.3	2047	2	-2	-2848	-1	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGTGGTGTCATTGACT	NA	False	NA	0	True	AATAAA	-12	NA	37333134	37322181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_37327012_37333067
ENSMUSG00000050714.10_5	chr2	-	4638	1	FSM	ENSMUSG00000050714.10	ENSMUST00000203522.2	4657	1	19	0	4	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37333128	37328490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_37328500_37333100
ENSMUSG00000050721.10_0	chr9	-	3289	6	FSM	ENSMUSG00000050721.10	ENSMUST00000068944.9	3273	6	-22	6	-22	-6	multi-exon	FALSE	canonical	3	13	junction_5	5.23832034148352	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAACTTCTCTGGCCCAA	NA	False	NA	NA	False	AATAAA	-10	NA	65487344	65461671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_65464362_65465900_65466000_65466701_65466807_65471165_65471286_65480261_65480412_65487219
ENSMUSG00000050721.10_1	chr9	-	1271	1	ISM	ENSMUSG00000050721.10	ENSMUST00000214740.2	5046	7	23377	1689	6507	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTCTCTGGCCCAAGCC	NA	False	NA	NA	False	AATAAA	-13	NA	65462939	65461668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_65461700_65462900
ENSMUSG00000050730.18_1	chr9	-	3606	5	ISM	ENSMUSG00000050730.18	ENSMUST00000093893.12	6116	23	232649	251	232448	-251	3prime_fragment	FALSE	canonical	3	47	junction_2	11.2555541844904	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTCCATGCAGTGTGAAG	NA	False	NA	-6	True	AATAAA	-15	NA	9006457	8994580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_8997687_8998166_8998247_9003620_9003684_9005734_9005892_9006257
ENSMUSG00000050730.18_19	chr9	-	3660	23	NIC	ENSMUSG00000050730.18	novel	6116	23	NA	NA	-34	-2445	combination_of_known_splicesites	FALSE	canonical	0	0	junction_20	15.3509899538103	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATCACATGTGCATAT	8	True	NA	NA	False	ATTAAA	-12	NA	9239065	8996774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_8997687_8998166_8998247_9003620_9003684_9005734_9005892_9006257_9006642_9007968_9008114_9009277_9009438_9011336_9011443_9015300_9015360_9016144_9016230_9016964_9017040_9018204_9018268_9029423_9029464_9030794_9030874_9033471_9033582_9035509_9035611_9046505_9046636_9048888_9048994_9059049_9059161_9074909_9075012_9155303_9155366_9180027_9180124_9238630
ENSMUSG00000050730.18_2	chr9	-	3773	24	NIC	ENSMUSG00000050730.18	novel	6116	23	NA	NA	18	-2427	combination_of_known_junctions	FALSE	canonical	3	46	junction_9	8.11449262420049	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTGCTTCCTATCAGT	-15	True	NA	NA	False	AATAAA	-13	NA	9239088	8996756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_8997687_8998166_8998247_9003620_9003684_9005734_9005892_9006257_9006642_9007968_9008114_9009277_9009438_9011336_9011443_9015300_9015360_9016144_9016230_9016964_9017040_9018204_9018268_9029423_9029464_9030794_9030874_9033471_9033582_9035509_9035611_9046505_9046636_9048888_9048994_9059049_9059161_9074909_9075012_9115690_9115763_9155303_9155366_9180027_9180124_9238630
ENSMUSG00000050730.18_25	chr9	-	1973	17	NIC	ENSMUSG00000050730.18	novel	1868	16	NA	NA	-11	-8	combination_of_known_junctions	FALSE	canonical	3	46	junction_2	7.44038809471656	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAACTGGACTCC	-2	True	NA	NA	False	NA	NA	NA	9239117	9011246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_9011443_9015300_9015360_9016144_9016230_9016964_9017040_9018204_9018268_9029423_9029464_9030794_9030874_9033471_9033582_9035509_9035611_9046505_9046636_9048888_9048994_9059049_9059161_9074909_9075012_9115690_9115763_9155303_9155366_9180027_9180124_9238630
ENSMUSG00000050730.18_3	chr9	-	2424	1	ISM	ENSMUSG00000050730.18	ENSMUST00000093893.12	6116	23	242108	245	241907	-245	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGCAGTGTGAAGAAGCAT	NA	False	NA	0	True	AATAAA	-21	NA	8996998	8994574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_8994600_8997000
ENSMUSG00000050730.18_5	chr9	-	4523	3	ISM	ENSMUSG00000050730.18	ENSMUST00000093893.12	6116	23	234156	244	233955	-244	3prime_fragment	FALSE	canonical	3	47	junction_2	15	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAGTGTGAAGAAGCATT	NA	False	NA	1	True	AATAAA	-22	NA	9004950	8994573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_8997687_8998166_8998247_9003620
ENSMUSG00000050732.10_0	chr6	-	684	3	FSM	ENSMUSG00000050732.10	ENSMUST00000059983.10	820	3	129	7	129	-2	multi-exon	FALSE	canonical	3	289	junction_1	0.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTACGAGGCGCTTTAC	8222	False	NA	-25	True	AATAAA	-18	NA	72367557	72362212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72362637_72365244_72365404_72367456
ENSMUSG00000050732.10_2	chr6	-	2766	2	FSM	ENSMUSG00000050732.10	ENSMUST00000142613.2	2076	2	-692	2	100	-2	multi-exon	FALSE	canonical	3	289	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTACGAGGCGCTTTAC	8193	False	NA	-25	True	AATAAA	-18	NA	72367586	72362212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72362637_72365244
ENSMUSG00000050737.14_0	chr2	-	1298	3	FSM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	38	2311	38	500	multi-exon	FALSE	canonical	3	78	junction_1	10.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTCGGTGTCTAAGACC	8449	False	NA	NA	False	ATTAAA	-20	NA	30793271	30781793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30782839_30790878_30790962_30793101
ENSMUSG00000050737.14_1	chr2	-	1349	1	ISM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	12472	6	6644	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCTGTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	30780837	30779488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_30779500_30780800
ENSMUSG00000050737.14_2	chr2	-	1093	2	NIC	ENSMUSG00000050737.14	novel	3647	3	NA	NA	160	500	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTCGGTGTCTAAGACC	8571	False	NA	NA	False	ATTAAA	-20	NA	30793149	30781793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30782839_30793101
ENSMUSG00000050737.14_4	chr2	-	1094	2	ISM	ENSMUSG00000050737.14	ENSMUST00000056046.10	703	3	873	-500	873	500	3prime_fragment	FALSE	canonical	3	78	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTCGGTGTCTAAGACC	5759	False	NA	NA	False	ATTAAA	-20	NA	30790927	30781793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_30782839_30790878
ENSMUSG00000050737.14_6	chr2	-	3448	3	FSM	ENSMUSG00000050737.14	ENSMUST00000056046.10	703	3	60	-2805	60	-6	multi-exon	FALSE	canonical	0	0	junction_2	39	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCTGTGGTCAT	9980	False	NA	NA	False	NA	NA	NA	30791740	30779488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30782839_30790878_30790962_30791725
ENSMUSG00000050751.15_0	chr8	-	3348	7	FSM	ENSMUSG00000050751.15	ENSMUST00000140012.8	3222	7	-128	2	-128	-2	multi-exon	FALSE	canonical	3	72	junction_6	10.4083299973307	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCGGCTGTTAGTATGTG	NA	False	NA	-8	True	AATAAA	-19	NA	125161205	125095793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848_125103030_125106922_125107058_125110933_125111362_125160537
ENSMUSG00000050751.15_4	chr8	-	1936	3	ISM	ENSMUSG00000050751.15	ENSMUST00000136892.3	1739	7	18773	-968	668	-2	3prime_fragment	FALSE	canonical	3	95	junction_1	5.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCGGCTGTTAGTATGTG	NA	False	NA	-8	True	AATAAA	-19	NA	125101182	125095793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_125097426_125098590_125098697_125100984
ENSMUSG00000050751.15_5	chr8	-	2375	4	ISM	ENSMUSG00000050751.15	ENSMUST00000136892.3	1739	7	16668	-968	-1002	-2	3prime_fragment	FALSE	canonical	3	93	junction_3	5.71547606649408	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCGGCTGTTAGTATGTG	NA	False	NA	-8	True	AATAAA	-19	NA	125103287	125095793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848
ENSMUSG00000050762.6_1	chr17	+	1231	6	FSM	ENSMUSG00000050762.6	ENSMUST00000059482.6	1253	6	17	5	17	-5	multi-exon	FALSE	canonical	2	6	junction_4	4.88262224629348	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	4548	False	NA	NA	False	NA	NA	NA	24257134	24264923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24257336_24261027_24261055_24261775_24261939_24263233_24263506_24263832_24264003_24264525
ENSMUSG00000050777.8_0	chr1	-	868	2	FSM	ENSMUSG00000050777.8	ENSMUST00000056089.8	1311	2	294	149	294	-149	multi-exon	FALSE	canonical	3	40	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGGAGAGTATCCTAAAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	120001510	119995255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_119996055_120001441
ENSMUSG00000050786.9_0	chr6	+	2313	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	36	2	3	2	multi-exon	FALSE	canonical	3	46	junction_2	7.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAATGGTTATTTTTGGTT	NA	False	NA	13	True	AATAAA	-17	NA	49296243	49318514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_49296415_49310844_49311232_49316759
ENSMUSG00000050786.9_1	chr6	+	1586	4	NIC	ENSMUSG00000050786.9	novel	2372	4	NA	NA	-8	-806	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	28.0515398666257	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATGGCTGTTGGTTTGA	NA	False	NA	NA	False	AATAAA	-19	NA	49296232	49317706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_49296415_49310844_49311232_49316196_49316267_49316759
ENSMUSG00000050786.9_5	chr6	+	670	1	ISM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	20827	812	20794	-808	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATCATGGCTGTTGGTTT	NA	False	NA	NA	False	AATAAA	-44	NA	49317034	49317704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_49317000_49317700
ENSMUSG00000050796.5_0	chr4	-	1795	1	FSM	ENSMUSG00000050796.5	ENSMUST00000052185.5	3184	1	14	1375	14	-1375	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTTGTATCTGTGGATT	7224	False	NA	-2	True	ACTAAA	-17	NA	156077092	156075297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_156075300_156077100
ENSMUSG00000050812.19_3	chr4	-	5848	49	NIC	ENSMUSG00000050812.19	novel	7045	49	NA	NA	-149	-1134	combination_of_known_junctions	FALSE	canonical	3	51	junction_48	26.1772719352537	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGCCTTAAATTTTG	3400	False	NA	-27	True	AATAAA	-4	NA	58912079	58800044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_58800321_58801732_58801805_58803669_58803759_58805540_58805647_58807750_58807890_58809395_58809589_58809681_58809726_58810615_58810825_58811370_58811563_58811708_58811776_58811851_58811944_58812643_58812711_58813991_58814082_58815258_58815325_58817399_58817551_58819142_58819265_58820127_58820176_58821362_58821469_58822035_58822116_58824165_58824334_58824697_58824816_58826401_58826471_58827036_58827152_58828007_58828063_58828506_58828653_58830333_58830458_58832703_58832806_58833925_58834099_58834496_58834660_58836121_58836257_58840674_58840767_58841382_58841606_58842567_58842649_58844078_58844203_58846998_58847103_58849679_58849803_58849886_58849954_58850903_58850954_58853115_58853195_58853650_58853737_58861524_58861645_58864346_58864429_58869414_58869555_58872588_58872761_58875423_58875574_58877044_58877164_58879017_58879135_58885367_58885499_58911868
ENSMUSG00000050812.19_36	chr4	-	5800	50	NIC	ENSMUSG00000050812.19	novel	7045	49	NA	NA	0	-1134	combination_of_known_junctions	FALSE	canonical	3	16	junction_49	33.7965099031343	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGCCTTAAATTTTG	2	True	NA	-27	True	AATAAA	-4	NA	58911927	58800044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_58800321_58801732_58801805_58803669_58803759_58805540_58805647_58807750_58807890_58809395_58809589_58809681_58809726_58810615_58810825_58811370_58811563_58811708_58811776_58811851_58811944_58812643_58812711_58813991_58814082_58815258_58815325_58817399_58817551_58819142_58819265_58820127_58820176_58821362_58821469_58822035_58822116_58824165_58824334_58824697_58824816_58826401_58826471_58827036_58827152_58828007_58828063_58828506_58828653_58830333_58830458_58832703_58832806_58833925_58834099_58834496_58834660_58836121_58836257_58840674_58840767_58841382_58841606_58842567_58842649_58844078_58844203_58846998_58847103_58849679_58849803_58849886_58849954_58850903_58850954_58853115_58853195_58853650_58853737_58861524_58861645_58864346_58864429_58869414_58869555_58872588_58872761_58875423_58875574_58877044_58877164_58879017_58879135_58885367_58885499_58905003_58905108_58911868
ENSMUSG00000050812.19_4	chr4	-	5896	49	FSM	ENSMUSG00000050812.19	ENSMUST00000102889.10	7045	49	15	1134	15	-1134	multi-exon	FALSE	canonical	3	80	junction_48	23.9024347899725	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGCCTTAAATTTTG	-7	True	NA	-27	True	AATAAA	-4	NA	58912734	58800044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_58800321_58801732_58801805_58803669_58803759_58805540_58805647_58807750_58807890_58809395_58809589_58809681_58809726_58810615_58810825_58811370_58811563_58811708_58811776_58811851_58811944_58812643_58812711_58813991_58814082_58815258_58815325_58817399_58817551_58819142_58819265_58820127_58820176_58821362_58821469_58822035_58822116_58824165_58824334_58824697_58824816_58826401_58826471_58827036_58827152_58828007_58828063_58828506_58828653_58830333_58830458_58832703_58832806_58833925_58834099_58834496_58834660_58836121_58836257_58840674_58840767_58841382_58841606_58842567_58842649_58844078_58844203_58846998_58847103_58849679_58849803_58849886_58849954_58850903_58850954_58853115_58853195_58853650_58853737_58861524_58861645_58864346_58864429_58869414_58869555_58872588_58872761_58875423_58875574_58877044_58877164_58879017_58879135_58885367_58885499_58912475
ENSMUSG00000050812.19_5	chr4	-	6010	50	NIC	ENSMUSG00000050812.19	novel	7045	49	NA	NA	15	-1124	combination_of_known_junctions	TRUE	canonical	3	17	junction_49	33.7119878645701	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTTTGCTCCTTATTA	-7	True	NA	-17	True	AATAAA	-14	NA	58912734	58800034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_58800321_58801732_58801805_58803669_58803759_58805540_58805647_58807750_58807890_58809395_58809589_58809681_58809726_58810615_58810825_58811370_58811563_58811708_58811776_58811851_58811944_58812643_58812711_58813991_58814082_58815258_58815325_58817399_58817551_58819142_58819265_58820127_58820176_58821362_58821469_58822035_58822116_58824165_58824334_58824697_58824816_58826401_58826471_58827036_58827152_58828007_58828063_58828506_58828653_58830333_58830458_58832703_58832806_58833925_58834099_58834496_58834660_58836121_58836257_58840674_58840767_58841382_58841606_58842567_58842649_58844078_58844203_58846998_58847103_58849679_58849803_58849886_58849954_58850903_58850954_58853115_58853195_58853650_58853737_58861524_58861645_58864346_58864429_58869414_58869555_58872588_58872761_58875423_58875574_58877044_58877164_58879017_58879135_58885367_58885499_58905003_58905108_58912475
ENSMUSG00000050815.7_0	chr19	+	170	1	NIC	ENSMUSG00000050815.7	novel	2131	4	NA	NA	-520	-1438	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTTAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	12399108	12399278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_12399100_12399300
ENSMUSG00000050821.15_0	chr16	+	2399	7	FSM	ENSMUSG00000050821.15	ENSMUST00000232207.2	962	7	36	-1473	7	-7	multi-exon	FALSE	canonical	0	0	junction_3	0.687184270936277	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTCTATATACATCTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	20512036	20521787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20512223_20513517_20513580_20514488_20514632_20517671_20517766_20518017_20518201_20518378_20518496_20520173
ENSMUSG00000050822.12_0	chr5	+	2781	11	FSM	ENSMUSG00000050822.12	ENSMUST00000058418.8	2789	11	8	0	8	0	multi-exon	FALSE	canonical	3	36	junction_7	3.13847096529504	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGCTGTCCTGAGGAAGT	NA	False	NA	NA	False	ATTAAA	-17	NA	142687863	142708245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_142688047_142691110_142691291_142697717_142697850_142698641_142698756_142699765_142699895_142700800_142700876_142703346_142703592_142704211_142704354_142704465_142704654_142705711_142705953_142707093
ENSMUSG00000050822.12_4	chr5	+	2766	11	NNC	ENSMUSG00000050822.12	novel	2789	11	NA	NA	8	-10	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_5	12.2	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGACTGCCCACCGCTGTC	NA	False	NA	NA	False	ATTAAA	-7	NA	142687863	142708235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_142688047_142691110_142691291_142697717_142697850_142698641_142698756_142699765_142699895_142700805_142700876_142703346_142703592_142704211_142704354_142704465_142704654_142705711_142705953_142707093
ENSMUSG00000050824.13_0	chr17	-	2665	3	NNC	ENSMUSG00000050824.13	novel	2733	3	NA	NA	-16893	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGTTCTTTTCCAAAGCAA	NA	False	NA	NA	False	AATAAA	-18	NA	25733155	25708848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_25711263_25714000_25714153_25733056
ENSMUSG00000050824.13_1	chr17	-	2540	2	NNC	ENSMUSG00000050824.13	novel	2506	2	NA	NA	-16921	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACGTTCTTTTCCAAAGCA	NA	False	NA	NA	False	AATAAA	-17	NA	25733183	25708849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_25711263_25733056
ENSMUSG00000050824.13_2	chr17	-	2229	1	ISM	ENSMUSG00000050824.13	ENSMUST00000051864.5	2733	3	5185	0	5112	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGTTCTTTTCCAAAGCAA	NA	False	NA	NA	False	AATAAA	-18	NA	25711077	25708848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_25708800_25711100
ENSMUSG00000050844.6_0	chr10	+	1064	3	FSM	ENSMUSG00000050844.6	ENSMUST00000057341.6	1062	3	-12	10	-12	-10	multi-exon	TRUE	canonical	3	7	junction_2	4.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATAAAGTATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	21469031	21498265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_21469134_21469230_21469472_21497544
ENSMUSG00000050844.6_1	chr10	+	690	2	ISM	ENSMUSG00000050844.6	ENSMUST00000057341.6	1062	3	-29	28474	-29	-27863	5prime_fragment	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGTTATCCAGCCTGGA	NA	False	NA	NA	False	AATAAA	-7	NA	21469014	21469801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_21469134_21469230
ENSMUSG00000050846.10_0	chr15	+	2371	2	FSM	ENSMUSG00000050846.10	ENSMUST00000037260.8	2486	2	101	14	101	-14	multi-exon	FALSE	canonical	3	106	junction_1	0	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAAATCCCAAGTCT	NA	False	NA	-4	True	AATAAA	-2	NA	75812901	75821235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_75813009_75818971
ENSMUSG00000050846.10_3	chr15	+	2256	1	ISM	ENSMUSG00000050846.10	ENSMUST00000037260.8	2486	2	6172	21	6172	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAACAAAACAAAAATCC	NA	False	NA	-11	True	NA	NA	NA	75818972	75821228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_75819000_75821200
ENSMUSG00000050854.10_0	chr4	-	1856	4	FSM	ENSMUSG00000050854.10	ENSMUST00000128098.8	929	4	-11	-916	-11	-2	multi-exon	FALSE	canonical	2	4	junction_3	2.44948974278318	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTCTGTCTGCACCATGG	7998	False	NA	NA	False	AATAAA	-21	NA	118401252	118398139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_118399569_118399797_118399958_118400552_118400697_118401129
ENSMUSG00000050854.10_2	chr4	-	1835	4	FSM	ENSMUSG00000050854.10	ENSMUST00000060214.10	1864	4	28	1	28	-1	multi-exon	FALSE	canonical	0	0	junction_3	4.18993502999218	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTGTCTGCACCATGGC	8353	False	NA	NA	False	AATAAA	-22	NA	118400897	118398138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_118399569_118399797_118399958_118400552_118400697_118400796
ENSMUSG00000050854.10_3	chr4	-	1730	2	FSM	ENSMUSG00000050854.10	ENSMUST00000150044.2	717	2	57	-1070	57	-6	multi-exon	FALSE	canonical	3	10	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTAGTTCTGTCTGCACC	9148	False	NA	NA	False	AATAAA	-17	NA	118400102	118398143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_118399569_118399797
ENSMUSG00000050855.17_0	chr7	-	1840	1	ISM	ENSMUSG00000050855.17	ENSMUST00000145098.2	3712	4	7870	682	7671	4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGACTTTGTGGTGTTCG	NA	False	NA	0	True	AATAAA	-25	NA	29545196	29543356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_29543400_29545200
ENSMUSG00000050855.17_1	chr7	-	3001	5	NIC	ENSMUSG00000050855.17	novel	2764	5	NA	NA	7	3	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	18.7082869338697	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGACTTTGTGGTGTTC	3430	False	NA	-1	True	AATAAA	-24	NA	29553087	29543357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552701
ENSMUSG00000050855.17_3	chr7	-	3107	4	NNC	ENSMUSG00000050855.17	novel	3712	4	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	27	junction_3	11.3431330181157	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGTGTGACTTTGTGG	3439	False	NA	-6	True	AATAAA	-19	NA	29553078	29543362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_29545674_29545893_29546386_29550366_29550443_29552850
ENSMUSG00000050855.17_4	chr7	-	2832	5	NNC	ENSMUSG00000050855.17	novel	2764	5	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	9.83298021964857	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGGTGTGACTTTGTGGT	3446	False	NA	-5	True	AATAAA	-20	NA	29553071	29543361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552850
ENSMUSG00000050855.17_6	chr7	-	2761	5	FSM	ENSMUSG00000050855.17	ENSMUST00000085792.5	2764	5	1	2	1	-2	multi-exon	FALSE	canonical	3	25	junction_4	10.6624340560681	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGTGTGACTTTGTGG	3445	False	NA	-6	True	AATAAA	-19	NA	29553072	29543362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552921
ENSMUSG00000050855.17_7	chr7	-	3038	4	FSM	ENSMUSG00000050855.17	ENSMUST00000145098.2	3712	4	-13	687	-6	-1	multi-exon	FALSE	canonical	3	25	junction_3	12.2836838484589	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGGTGTGACTTTGTGGT	3438	False	NA	-5	True	AATAAA	-20	NA	29553079	29543361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29545674_29545893_29546386_29550366_29550443_29552921
ENSMUSG00000050856.17_0	chr5	-	299	4	FSM	ENSMUSG00000050856.17	ENSMUST00000049628.16	371	4	62	10	11	-8	multi-exon	FALSE	canonical	3	3979	junction_1	506.673026275877	678	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGTGGCTTCCTCTCTC	5564	False	NA	-10	True	AATAAA	-14	NA	108582252	108581119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_108581204_108581596_108581696_108581891_108581947_108582191
ENSMUSG00000050860.7_0	chr11	+	2036	3	FSM	ENSMUSG00000050860.7	ENSMUST00000150134.2	590	3	-8	-1438	-8	-1	multi-exon	FALSE	canonical	3	31	junction_2	1.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGGGACTTGTTCTCTT	2189	False	NA	19	True	AATAAA	-15	NA	95715316	95722965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95715536_95719491_95719602_95721258
ENSMUSG00000050860.7_5	chr11	+	1902	3	FSM	ENSMUSG00000050860.7	ENSMUST00000054173.4	1910	3	6	2	6	-2	multi-exon	FALSE	canonical	3	8	junction_2	13	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAAGGGACTTGTTCTCT	2204	False	NA	18	True	AATAAA	-14	NA	95715331	95722964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95715536_95719491_95719602_95721376
ENSMUSG00000050876.10_0	chr13	-	185	1	Genic_Genomic	ENSMUSG00000050876.10	novel	NA	NA	NA	NA	6208	17	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	59847787	59847602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_59847600_59847800
ENSMUSG00000050876.10_2	chr13	-	2032	1	ISM	ENSMUSG00000050876.10	ENSMUST00000224982.2	5325	5	8217	276	4068	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGTGAGTGTGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	59849927	59847895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_59847900_59849900
ENSMUSG00000050890.16_0	chr4	-	4479	3	FSM	ENSMUSG00000050890.16	ENSMUST00000105876.9	4509	3	22	8	-6	-8	multi-exon	FALSE	canonical	3	58	junction_1	10	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAACCTTGAAAGTT	4313	False	NA	NA	False	AATAAA	-10	NA	134014542	134002321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134006428_134011556_134011859_134014471
ENSMUSG00000050890.16_2	chr4	-	2854	1	ISM	ENSMUSG00000050890.16	ENSMUST00000105877.9	4674	4	9375	9	9361	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAACCTTGAAAGTT	7258	False	NA	NA	False	AATAAA	-10	NA	134005175	134002321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_134002300_134005200
ENSMUSG00000050890.16_5	chr4	-	4646	3	FSM	ENSMUSG00000050890.16	ENSMUST00000061234.14	4686	3	31	9	31	-8	multi-exon	FALSE	canonical	3	10	junction_2	24	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAACCTTGAAAGTT	3680	False	NA	NA	False	AATAAA	-10	NA	134015175	134002321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134006428_134011556_134011859_134014937
ENSMUSG00000050891.11_0	chr15	-	911	12	FSM	ENSMUSG00000050891.11	ENSMUST00000228538.3	915	12	3	1	3	-1	multi-exon	FALSE	canonical	3	68	junction_6	18.2181455270914	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTTTCCTTTTTATG	NA	False	NA	-2	True	ATTAAA	-15	NA	58805573	58772823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000050891.11_11	chr15	-	973	12	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	30.1270038941207	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTTTCCTTTTTATG	NA	False	NA	-2	True	ATTAAA	-15	NA	58805559	58772823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795677_58795818_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000050891.11_14	chr15	-	2026	3	ISM	ENSMUSG00000050891.11	ENSMUST00000227540.2	1819	10	27238	1	9678	-1	3prime_fragment	FALSE	canonical	3	122	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCATTTGAGTTATCCTTG	NA	False	NA	-4	True	AATAAA	-15	NA	58778349	58771780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_58772920_58776582_58776710_58777589
ENSMUSG00000050891.11_6	chr15	-	837	11	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	26.3417918904542	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTGTGTTTCCTTTTTA	NA	False	NA	-4	True	ATTAAA	-13	NA	58805565	58772825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000050896.13_0	chr2	-	2268	3	FSM	ENSMUSG00000050896.13	ENSMUST00000151799.8	1303	3	-351	-614	-351	614	multi-exon	FALSE	canonical	1	1	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCTGTAAGATTTTTTT	9958	False	NA	NA	False	ATTAAA	-16	NA	84717405	84701653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84703040_84710731_84711214_84717005
ENSMUSG00000050908.13_0	chr16	-	2929	7	NIC	ENSMUSG00000050908.13	novel	3315	7	NA	NA	16	-10	intron_retention	FALSE	canonical	0	0	junction_6	4.60675832036175	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAAAACTTGTATTTC	NA	False	NA	NA	False	AATAAA	-7	NA	10265210	10238430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_10240750_10242062_10242123_10243623_10243753_10244864_10244994_10245246_10245337_10264793_10264874_10265088
ENSMUSG00000050908.13_1	chr16	-	3138	6	NIC	ENSMUSG00000050908.13	novel	3315	7	NA	NA	-7	-4	intron_retention	FALSE	canonical	1	2	junction_5	3.84707681233427	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTGTATTTCTCATAG	NA	False	NA	NA	False	AATAAA	-13	NA	10265198	10238424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_10240750_10242062_10242123_10243623_10243753_10244864_10244994_10245246_10245337_10264793
ENSMUSG00000050908.13_2	chr16	-	3084	8	NIC	ENSMUSG00000050908.13	novel	3315	7	NA	NA	12	-4	intron_retention	FALSE	canonical	0	0	junction_7	3.92792202424786	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTGTATTTCTCATAG	NA	False	NA	NA	False	AATAAA	-13	NA	10265214	10238424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_10240750_10242062_10242123_10243623_10243753_10244864_10244994_10245246_10245337_10246522_10246668_10264793_10264874_10265088
ENSMUSG00000050908.13_4	chr16	-	3116	1	Genic_Genomic	ENSMUSG00000050908.13	novel	NA	NA	NA	NA	8149	2636	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACC	NA	False	NA	NA	False	CATAAA	-5	NA	10238900	10235784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_-_10235800_10238900
ENSMUSG00000050908.13_5	chr16	-	3305	7	FSM	ENSMUSG00000050908.13	ENSMUST00000051118.7	3315	7	6	4	6	-4	multi-exon	FALSE	canonical	2	5	junction_6	2.91070819942883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTGTATTTCTCATAG	NA	False	NA	NA	False	AATAAA	-13	NA	10265220	10238424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_10240750_10242062_10242123_10243623_10243753_10244864_10244994_10245246_10245337_10246522_10246668_10264793
ENSMUSG00000050910.6_0	chr11	+	3697	5	FSM	ENSMUSG00000050910.6	ENSMUST00000053288.6	3700	5	-1	4	-1	-4	multi-exon	FALSE	canonical	3	168	junction_3	7.49583217528247	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTCCAAGTGACCCTGG	NA	False	NA	8	True	AATAAA	-18	NA	115272740	115286954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115273228_115281336_115281450_115281688_115281838_115283484_115283650_115284171
ENSMUSG00000050910.6_11	chr11	+	2222	1	ISM	ENSMUSG00000050910.6	ENSMUST00000053288.6	3700	5	11990	5	11990	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAGTCCAAGTGACCCTG	7306	False	NA	7	True	AATAAA	-17	NA	115284731	115286953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_115284700_115287000
ENSMUSG00000050912.16_0	chr9	+	2830	5	FSM	ENSMUSG00000050912.16	ENSMUST00000052865.16	2907	5	72	5	-36	0	multi-exon	FALSE	canonical	3	248	junction_1	14.5086181285469	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGTGTTTAGTGTTTTG	-4	True	NA	11	True	AATAAA	-14	NA	7764113	7794329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_7764314_7768290_7768342_7790842_7791110_7791311_7791466_7792171
ENSMUSG00000050912.16_7	chr9	+	1559	1	ISM	ENSMUSG00000050912.16	ENSMUST00000052865.16	2907	5	28729	5	28605	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGTGTTTAGTGTTTTG	42	False	NA	11	True	AATAAA	-14	NA	7792770	7794329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_7792800_7794300
ENSMUSG00000050914.17_1	chr8	-	695	5	NNC	ENSMUSG00000050914.17	novel	927	5	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	13.6083614002568	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAATTAAAATTTCTGTG	NA	False	NA	NA	False	ATTAAA	-10	NA	46452926	46449950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452895
ENSMUSG00000050914.17_2	chr8	-	917	5	FSM	ENSMUSG00000050914.17	ENSMUST00000053558.10	927	5	2	8	2	1	multi-exon	FALSE	canonical	3	27	junction_4	16.393596310755	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAAATTTCTGTGCATT	NA	False	NA	NA	False	ATTAAA	-14	NA	46452902	46449946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452653
ENSMUSG00000050914.17_3	chr8	-	881	5	FSM	ENSMUSG00000050914.17	ENSMUST00000153674.8	884	5	8	-5	8	-4	multi-exon	FALSE	canonical	3	4	junction_4	25.936219847927	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTTCTGTGCATTCTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	46452896	46449942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452687
ENSMUSG00000050914.17_4	chr8	-	2468	2	FSM	ENSMUSG00000050914.17	ENSMUST00000144525.2	416	2	-1997	-55	2	1	multi-exon	FALSE	canonical	3	53	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAAATTTCTGTGCATT	NA	False	NA	NA	False	ATTAAA	-14	NA	46452902	46449946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_46450163_46450650
ENSMUSG00000050917.6_1	chr7	+	3028	3	FSM	ENSMUSG00000050917.6	ENSMUST00000060336.5	3030	3	2	0	2	0	multi-exon	FALSE	canonical	3	677	junction_2	22.5	1517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCTGTGTCTGCTTTG	8004	False	NA	28	True	ATTAAA	-18	NA	144415124	144418980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_144415570_144415968_144416073_144416501
ENSMUSG00000050917.6_12	chr7	+	1702	1	ISM	ENSMUSG00000050917.6	ENSMUST00000060336.5	3030	3	2156	0	2156	0	mono-exon	FALSE	NA	NA	NA	NA	NA	159	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCTGTGTCTGCTTTG	NA	False	NA	28	True	ATTAAA	-18	NA	144417278	144418980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_144417300_144419000
ENSMUSG00000050930.6_0	chr8	+	3509	1	FSM	ENSMUSG00000050930.6	ENSMUST00000053078.5	3542	1	32	1	32	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGTTTGGTGTTTATTT	NA	False	NA	1	True	AATAAA	-14	NA	126396588	126400097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_126396600_126400100
ENSMUSG00000050931.8_0	chr3	-	3655	1	ISM	ENSMUSG00000050931.8	ENSMUST00000090246.5	5801	6	22289	5	22289	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAATATATGAATTTCGGC	NA	False	NA	NA	False	ATTAAA	-15	NA	131116293	131112638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_131112600_131116300
ENSMUSG00000050931.8_2	chr3	-	4858	5	ISM	ENSMUSG00000050931.8	ENSMUST00000090246.5	5801	6	3065	7	3065	-7	3prime_fragment	FALSE	canonical	3	5	junction_1	1.87082869338697	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAAATATATGAATTTCG	NA	False	NA	NA	False	ATTAAA	-13	NA	131135517	131112640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_131116960_131118587_131118755_131123971_131124126_131129813_131129932_131135417
ENSMUSG00000050945.9_0	chr18	-	2844	5	FSM	ENSMUSG00000050945.9	ENSMUST00000063989.7	3211	5	23	344	-3	-249	multi-exon	FALSE	canonical	3	10	junction_4	5.40832691319598	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGTAGAGAAAATTGTTA	385	False	NA	NA	False	AATAAA	-26	NA	5334416	5210372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_5211199_5213118_5214920_5245385_5245454_5288860_5288939_5334345
ENSMUSG00000050945.9_1	chr18	-	3096	5	FSM	ENSMUSG00000050945.9	ENSMUST00000234241.2	3112	5	9	7	9	-7	multi-exon	FALSE	canonical	3	8	junction_4	6.20483682299543	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTGATATTTATTAGT	3	True	NA	NA	False	TATAAA	-11	NA	5334798	5210130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_5211199_5213118_5214920_5245385_5245454_5288860_5288939_5334717
ENSMUSG00000050945.9_2	chr18	-	1846	2	ISM	ENSMUSG00000050945.9	ENSMUST00000063989.7	3211	5	120638	7	120612	-7	3prime_fragment	FALSE	canonical	3	25	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACACAATTTTTGTTGTT	NA	False	NA	NA	False	CATAAA	-10	NA	5213801	5210035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_5211199_5213118
ENSMUSG00000050947.10_0	chr3	+	5018	2	FSM	ENSMUSG00000050947.10	ENSMUST00000050909.7	5030	2	7	5	7	4	multi-exon	FALSE	canonical	3	5	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCACAGTTTGTGGTTGG	543	False	NA	13	True	ATTAAA	-20	NA	108093657	108099087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108093995_108094406
ENSMUSG00000050947.10_1	chr3	+	5002	2	FSM	ENSMUSG00000050947.10	ENSMUST00000106656.2	5482	2	-30	510	-7	0	multi-exon	FALSE	canonical	2	8	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTGTGGTTGGTTTAT	529	False	NA	18	True	ATTAAA	-25	NA	108093643	108099092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108093995_108094441
ENSMUSG00000050947.10_2	chr3	+	5418	1	NIC	ENSMUSG00000050947.10	novel	5030	2	NA	NA	0	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGCACAGTTTGTGG	551	False	NA	9	True	ATTAAA	-16	NA	108093665	108099083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_108093700_108099100
ENSMUSG00000050953.11_1	chr10	+	3065	2	FSM	ENSMUSG00000050953.11	ENSMUST00000068581.9	3071	2	3	3	1	-3	multi-exon	FALSE	canonical	3	36	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGATAACCTGCATGT	NA	False	NA	NA	False	AATAAA	-16	NA	56253428	56266508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_56253615_56263629
ENSMUSG00000050953.11_5	chr10	+	2058	1	ISM	ENSMUSG00000050953.11	ENSMUST00000068581.9	3071	2	11025	3	9267	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGATAACCTGCATGT	NA	False	NA	NA	False	AATAAA	-16	NA	56264450	56266508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_56264400_56266500
ENSMUSG00000050954.16_11	chr13	-	2726	5	FSM	ENSMUSG00000050954.16	ENSMUST00000177530.8	4145	5	-42	1461	0	82	multi-exon	FALSE	canonical	0	0	junction_1	7.58287544405155	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGAGTAGGGGAAAGCC	NA	False	NA	NA	False	AGTAAA	-10	NA	48666912	48642595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_48644870_48651798_48651895_48652255_48652383_48660382_48660470_48666770
ENSMUSG00000050954.16_7	chr13	-	4115	5	FSM	ENSMUSG00000050954.16	ENSMUST00000176949.2	417	5	-30	-3668	-5	-3	multi-exon	FALSE	canonical	1	1	junction_1	6.34428877022476	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTTTCTCAACAATTC	NA	False	NA	NA	False	NA	NA	NA	48666932	48641137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_48644873_48651798_48651895_48652255_48652383_48660382_48660470_48666862
ENSMUSG00000050954.16_8	chr13	-	4097	5	NIC	ENSMUSG00000050954.16	novel	4145	5	NA	NA	-7	-5	intron_retention	FALSE	canonical	0	0	junction_1	6.68487097856047	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATTTTTTCTCAACAAT	NA	False	NA	NA	False	NA	NA	NA	48666919	48641139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_48644870_48651798_48651895_48652255_48652383_48660382_48660470_48666862
ENSMUSG00000050963.8_0	chr15	+	5145	2	FSM	ENSMUSG00000050963.8	ENSMUST00000072868.5	5456	2	171	140	171	42	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCGGCTCCTGCGCCATT	252	False	NA	NA	False	NA	NA	NA	34837671	34843413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_34837999_34838595
ENSMUSG00000050963.8_1	chr15	+	4683	1	ISM	ENSMUSG00000050963.8	ENSMUST00000072868.5	5456	2	1178	192	484	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTGCGATGTCAGTTTT	1259	False	NA	NA	False	TTTAAA	-14	NA	34838678	34843361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_34838700_34843400
ENSMUSG00000050965.15_1	chr11	-	3544	17	FSM	ENSMUSG00000050965.15	ENSMUST00000059595.11	8409	17	-2	4867	-2	-77	multi-exon	FALSE	canonical	2	9	junction_8	3.24458683810435	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTAATCTATATTATTGAT	6282	False	NA	NA	False	AATAAA	-12	NA	108234756	107829079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_107830507_107842291_107842433_107844467_107844576_107852398_107852480_107869059_107869199_107870028_107870092_107872436_107872529_107874710_107874885_107877073_107877212_107903452_107903550_107903770_107903906_107905050_107905208_107944800_107944930_107948587_107948700_108082955_108083039_108231471_108231504_108234320
ENSMUSG00000050965.15_2	chr11	-	2218	7	ISM	ENSMUSG00000050965.15	ENSMUST00000059595.11	8409	17	362062	4864	-2227	-74	3prime_fragment	FALSE	canonical	3	13	junction_2	3.07769755210323	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATCTATATTATTGATATA	NA	False	NA	NA	False	AATAAA	-15	NA	107872692	107829076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_107830507_107842291_107842433_107844467_107844576_107852398_107852480_107869059_107869199_107870028_107870092_107872436
ENSMUSG00000050965.15_3	chr11	-	2195	8	ISM	ENSMUSG00000050965.15	ENSMUST00000059595.11	8409	17	359900	4867	-4389	-77	3prime_fragment	FALSE	canonical	3	12	junction_7	3.20076521462973	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTAATCTATATTATTGAT	NA	False	NA	NA	False	AATAAA	-12	NA	107874854	107829079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_107830507_107842291_107842433_107844467_107844576_107852398_107852480_107869059_107869199_107870028_107870092_107872436_107872529_107874710
ENSMUSG00000050966.10_0	chr4	-	1972	1	ISM	ENSMUSG00000050966.10	ENSMUST00000051674.3	3505	4	13527	13	4097	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGGTACTGGTCTCTC	NA	False	NA	-4	True	AATAAA	-17	NA	133732625	133730653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133730700_133732600
ENSMUSG00000050966.10_1	chr4	-	3300	3	ISM	ENSMUSG00000050966.10	ENSMUST00000051674.3	3505	4	653	13	194	-13	3prime_fragment	FALSE	canonical	3	70	junction_1	3	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGGTACTGGTCTCTC	8903	False	NA	-4	True	AATAAA	-17	NA	133745499	133730653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133733633_133735221_133735407_133745363
ENSMUSG00000050966.10_2	chr4	-	3467	4	FSM	ENSMUSG00000050966.10	ENSMUST00000051674.3	3505	4	25	13	25	-13	multi-exon	FALSE	canonical	3	70	junction_1	2.62466929133727	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGGTACTGGTCTCTC	8275	False	NA	-4	True	AATAAA	-17	NA	133746127	133730653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133733633_133735221_133735407_133745363_133745561_133746021
ENSMUSG00000050966.10_3	chr4	-	3111	2	ISM	ENSMUSG00000050966.10	ENSMUST00000176292.2	484	4	1364	-2902	1364	-18	3prime_fragment	FALSE	canonical	3	70	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCAGAGTTGGTACTGGT	NA	False	NA	-9	True	AATAAA	-12	NA	133735358	133730658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_133733633_133735221
ENSMUSG00000050967.6_0	chr1	-	1240	4	FSM	ENSMUSG00000050967.6	ENSMUST00000053355.6	6091	4	478	4373	478	-4373	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	39690164	39661946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_39662412_39664037_39664152_39686943_39687114_39689673
ENSMUSG00000050973.12_0	chr7	+	1902	2	FSM	ENSMUSG00000050973.12	ENSMUST00000062915.9	4189	2	27	2260	27	-2260	multi-exon	FALSE	canonical	3	81	junction_1	0	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATAGTTTTTTTGTTGT	NA	False	NA	1	True	AGTAAA	-4	NA	79882639	79889549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79882954_79887961
ENSMUSG00000050989.11_0	chr4	-	3444	12	FSM	ENSMUSG00000050989.11	ENSMUST00000060435.8	3445	12	-5	6	-5	-6	multi-exon	FALSE	canonical	3	9	junction_3	3.13603423830188	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTAGCTTGGTGCTTTTC	8364	False	NA	-5	True	AATAAA	-13	NA	134279482	134265208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_134267101_134267944_134268047_134268133_134268247_134269647_134269754_134270023_134270213_134270360_134270443_134271895_134272034_134272499_134272625_134272791_134273002_134275261_134275396_134278727_134278846_134279247
ENSMUSG00000051007.16_1	chr7	-	1444	8	FSM	ENSMUSG00000051007.16	ENSMUST00000106008.3	1898	8	57	397	-1	-5	multi-exon	FALSE	canonical	3	140	junction_4	16.4564980032391	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTCATTTTTGTTGTTG	5494	False	NA	-8	True	NA	NA	NA	140993992	140988103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140989854_140990690_140990799_140990898_140991005_140991710_140991788_140993914
ENSMUSG00000051007.16_2	chr7	-	1406	8	NNC	ENSMUSG00000051007.16	novel	1898	8	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	60.2725104023723	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCATTTTTGTTGTTGTT	5489	False	NA	-6	True	NA	NA	NA	140993997	140988101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140989854_140990735_140990799_140990898_140991005_140991710_140991788_140993914
ENSMUSG00000051007.16_3	chr7	-	2285	7	FSM	ENSMUSG00000051007.16	ENSMUST00000156353.8	2348	7	14	49	0	0	multi-exon	FALSE	canonical	3	166	junction_4	10.4721853816033	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGTTGTTGTTTGTTT	5497	False	NA	-1	True	NA	NA	NA	140993989	140988096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140990799_140990898_140991005_140991710_140991788_140993914
ENSMUSG00000051022.8_0	chr5	-	1584	2	FSM	ENSMUSG00000051022.8	ENSMUST00000053116.7	1684	2	22	78	-15	-78	multi-exon	FALSE	canonical	3	8	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATAGCTCTTTGT	NA	False	NA	NA	False	AATATA	-15	NA	39801955	39771359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_39772748_39801759
ENSMUSG00000051022.8_1	chr5	-	1712	2	FSM	ENSMUSG00000051022.8	ENSMUST00000137142.2	763	2	-197	-752	-197	-78	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAAATAGCTCTTTGT	NA	False	NA	NA	False	AATATA	-15	NA	39802786	39771359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_39772748_39802462
ENSMUSG00000051034.8_0	chr5	-	3633	3	FSM	ENSMUSG00000051034.8	ENSMUST00000049778.7	3929	3	9	287	9	-287	multi-exon	TRUE	canonical	3	10	junction_2	2	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCATTTATACATTTGGT	NA	False	NA	NA	False	AATAAA	-23	NA	129747154	129731943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_129735450_129737833_129737930_129747123
ENSMUSG00000051034.8_1	chr5	-	1895	1	ISM	ENSMUSG00000051034.8	ENSMUST00000049778.7	3929	3	13325	287	13325	-287	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCATTTATACATTTGGT	NA	False	NA	NA	False	AATAAA	-23	NA	129733838	129731943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_129731900_129733800
ENSMUSG00000051037.16_0	chr13	+	2740	4	FSM	ENSMUSG00000051037.16	ENSMUST00000120861.8	2712	4	-31	3	-31	-3	multi-exon	FALSE	canonical	2	3	junction_1	1.63299316185545	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTGGGTTTATTATTAT	NA	False	NA	11	True	AATAAA	-16	NA	67342538	67357359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_67342659_67346596_67346724_67347212_67347309_67354962
ENSMUSG00000051037.16_3	chr13	+	2670	4	NNC	ENSMUSG00000051037.16	novel	2712	4	NA	NA	229	-1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	1.24721912892465	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGGTTTATTATTATTA	NA	False	NA	13	True	AATAAA	-18	NA	67342827	67357361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_67342876_67346596_67346724_67347212_67347309_67354962
ENSMUSG00000051041.9_3	chr7	+	1972	3	FSM	ENSMUSG00000051041.9	ENSMUST00000120990.2	1685	3	-12	-275	-12	275	multi-exon	FALSE	canonical	2	7	junction_1	2.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAGTTACATTTCTTAT	NA	False	NA	NA	False	TATAAA	-20	NA	107166640	107190576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_107167102_107170243_107170533_107189354
ENSMUSG00000051041.9_5	chr7	+	1855	4	FSM	ENSMUSG00000051041.9	ENSMUST00000239087.2	699	4	-335	-821	-15	269	multi-exon	FALSE	canonical	2	7	junction_1	2.35702260395516	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACTATATTAGTTACATT	NA	False	NA	NA	False	TATAAA	-14	NA	107166637	107190570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_107167102_107170243_107170533_107189354_107189550_107189663
ENSMUSG00000051043.17_1	chr11	+	3719	5	NIC	ENSMUSG00000051043.17	novel	645	4	NA	NA	-16	-11	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	14.2390308658981	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTCTGTTCCTGTGTG	222	False	NA	NA	False	ATTAAA	-27	NA	114741961	114763432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_114742070_114754292_114755373_114757450_114757546_114759321_114759472_114761146
ENSMUSG00000051043.17_10	chr11	+	3739	5	NIC	ENSMUSG00000051043.17	novel	2200	4	NA	NA	-186	-24	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	11.7898261225516	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGAGGGGTTACTGCCT	1219	False	NA	NA	False	ATTAAA	-14	NA	114742958	114763419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_114743100_114754292_114755373_114757450_114757546_114759321_114759472_114761146
ENSMUSG00000051043.17_11	chr11	+	3390	4	ISM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	11833	24	-817	-24	3prime_fragment	FALSE	canonical	3	28	junction_3	4.98887651569859	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGAGGGGTTACTGCCT	NA	False	NA	NA	False	ATTAAA	-14	NA	114754500	114763419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_114755373_114757450_114757546_114759321_114759472_114761146
ENSMUSG00000051043.17_12	chr11	+	1749	3	ISM	ENSMUSG00000051043.17	ENSMUST00000152314.2	645	4	-1002	1515	-1002	-3	5prime_fragment	FALSE	canonical	3	32	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTAGCTCTTGCTTTGGGCT	NA	False	NA	NA	False	AATAAA	-15	NA	114754315	114759918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_114755373_114757450_114757546_114759321
ENSMUSG00000051043.17_2	chr11	+	1861	4	ISM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	-41	3522	-41	0	5prime_fragment	FALSE	canonical	3	20	junction_1	8.2192186706253	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTTGCTTTGGGCTTGT	887	False	NA	NA	False	AATAAA	-18	NA	114742626	114759921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_114742713_114754292_114755373_114757450_114757546_114759321
ENSMUSG00000051043.17_4	chr11	+	3668	5	FSM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	-12	11	-12	-11	multi-exon	FALSE	canonical	3	20	junction_1	7.21110255092798	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTCTGTTCCTGTGTG	916	False	NA	NA	False	ATTAAA	-27	NA	114742655	114763432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_114742713_114754292_114755373_114757450_114757546_114759321_114759472_114761146
ENSMUSG00000051043.17_5	chr11	+	3706	5	NIC	ENSMUSG00000051043.17	novel	2200	4	NA	NA	18	-5	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	13.4164078649987	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTCCTGTGTGTTTCTA	984	False	NA	NA	False	ATTAAA	-33	NA	114742723	114763438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_114742813_114754292_114755373_114757450_114757546_114759321_114759472_114761146
ENSMUSG00000051043.17_9	chr11	+	2004	4	FSM	ENSMUSG00000051043.17	ENSMUST00000021071.14	2200	4	192	4	162	-3	multi-exon	FALSE	canonical	2	8	junction_1	13.5973853695808	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTAGCTCTTGCTTTGGGCT	1128	False	NA	NA	False	AATAAA	-15	NA	114742867	114759918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_114743100_114754292_114755373_114757450_114757546_114759321
ENSMUSG00000051065.10_0	chr16	-	3092	2	FSM	ENSMUSG00000051065.10	ENSMUST00000100023.3	3055	2	-39	2	-39	-2	multi-exon	FALSE	canonical	3	119	junction_1	0	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGTTGTCATTATTAC	4758	False	NA	-2	True	AATAAA	-22	NA	28748464	28644929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_28647762_28748204
ENSMUSG00000051065.10_3	chr16	-	2194	1	ISM	ENSMUSG00000051065.10	ENSMUST00000100023.3	3055	2	101302	2	7996	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGTTGTCATTATTAC	NA	False	NA	-2	True	AATAAA	-22	NA	28647123	28644929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_28644900_28647100
ENSMUSG00000051067.9_0	chr10	-	3435	2	FSM	ENSMUSG00000051067.9	ENSMUST00000053986.9	3439	2	-5	9	-5	-9	multi-exon	FALSE	canonical	3	10	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACAAAAGTCAGACGTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	80679878	80668643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80671976_80679775
ENSMUSG00000051098.7_0	chr13	+	1122	2	FSM	ENSMUSG00000051098.7	ENSMUST00000057598.7	3957	2	49	2786	49	143	multi-exon	FALSE	canonical	3	18	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	81859508	81898608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_81860102_81898079
ENSMUSG00000051098.7_1	chr13	+	2527	1	ISM	ENSMUSG00000051098.7	ENSMUST00000057598.7	3957	2	39394	14	39205	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCAGTGTTCAAGTGGTG	NA	False	NA	NA	False	ATTAAA	-11	NA	81898853	81901380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_81898900_81901400
ENSMUSG00000051124.7_0	chr6	+	1360	2	FSM	ENSMUSG00000051124.7	ENSMUST00000054050.5	1384	2	23	1	23	-1	multi-exon	FALSE	canonical	3	46	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTATGATTGACTTCTT	1312	False	NA	16	True	NA	NA	NA	48653085	48655632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48653189_48654375
ENSMUSG00000051146.4_0	chr16	-	1404	2	FSM	ENSMUSG00000051146.4	ENSMUST00000052939.4	1291	2	-122	9	-122	-9	multi-exon	FALSE	canonical	3	19	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGTGTGTGTGTCTGC	NA	False	NA	-9	True	AATAAA	-16	NA	20440159	20437973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20438994_20439775
ENSMUSG00000051147.11_0	chr8	+	1376	2	FSM	ENSMUSG00000051147.11	ENSMUST00000093470.7	1396	2	12	8	12	6	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTCATTTTCAAAGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	67947521	67955228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_67947555_67953885
ENSMUSG00000051147.11_1	chr8	+	1090	1	ISM	ENSMUSG00000051147.11	ENSMUST00000093470.7	1396	2	6629	8	6539	6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTCATTTTCAAAGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	67954138	67955228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_67954100_67955200
ENSMUSG00000051149.16_0	chr2	-	4915	4	FSM	ENSMUSG00000051149.16	ENSMUST00000088001.6	4932	4	9	8	9	-8	multi-exon	FALSE	canonical	3	112	junction_3	29.1699998095456	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAAATATTTGCTTTTA	2926	False	NA	-9	True	AATAAA	-17	NA	168049023	168022913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168027093_168029486_168029580_168031201_168031315_168048493
ENSMUSG00000051149.16_1	chr2	-	2668	1	ISM	ENSMUSG00000051149.16	ENSMUST00000057793.11	4917	5	23261	8	23048	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAAATATTTGCTTTTA	NA	False	NA	-9	True	AATAAA	-17	NA	168025581	168022913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_168022900_168025600
ENSMUSG00000051149.16_2	chr2	-	5085	5	FSM	ENSMUSG00000051149.16	ENSMUST00000057793.11	4917	5	-176	8	14	-8	multi-exon	FALSE	canonical	3	20	junction_3	74.0249113474647	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAAATATTTGCTTTTA	2931	False	NA	-9	True	AATAAA	-17	NA	168049018	168022913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168027093_168029486_168029580_168031201_168031315_168046519_168046695_168048493
ENSMUSG00000051149.16_4	chr2	-	4780	3	FSM	ENSMUSG00000051149.16	ENSMUST00000139984.8	434	3	-372	-3974	31	-8	multi-exon	FALSE	canonical	3	12	junction_2	76.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAAATATTTGCTTTTA	2948	False	NA	-9	True	AATAAA	-17	NA	168049001	168022913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168027093_168029486_168029580_168048493
ENSMUSG00000051154.12_0	chr2	+	905	8	FSM	ENSMUSG00000051154.12	ENSMUST00000061158.5	935	8	17	13	4	-12	multi-exon	FALSE	canonical	3	388	junction_2	22.7909756576714	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGGGCGGCATTCTGTT	77	False	NA	24	True	AATAAA	-18	NA	18677250	18681029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
ENSMUSG00000051154.12_11	chr2	+	2725	4	FSM	ENSMUSG00000051154.12	ENSMUST00000130537.8	544	4	-1888	-293	23	-14	multi-exon	FALSE	canonical	3	404	junction_2	14.522013940528	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGAAGGGCGGCATTCTG	96	False	NA	22	True	AATAAA	-16	NA	18677269	18681027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_18679528_18679619_18679677_18679760_18679821_18680677
ENSMUSG00000051154.12_9	chr2	+	2200	7	NIC	ENSMUSG00000051154.12	novel	935	8	NA	NA	0	-15	intron_retention	FALSE	canonical	3	388	junction_1	21.7842960766593	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGAAGGGCGGCATTCT	70	False	NA	21	True	AATAAA	-15	NA	18677243	18681026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
ENSMUSG00000051159.17_0	chrX	-	1019	3	FSM	ENSMUSG00000051159.17	ENSMUST00000101336.10	1090	3	86	-15	86	-8	multi-exon	FALSE	canonical	3	50	junction_2	78.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGATAACTGCCTGGGT	NA	False	NA	-8	True	AATAAA	-12	NA	101295372	101290994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_101291615_101292168_101292294_101295098
ENSMUSG00000051159.17_1	chrX	-	790	3	FSM	ENSMUSG00000051159.17	ENSMUST00000050551.10	901	3	103	8	103	-8	multi-exon	FALSE	canonical	3	131	junction_2	38	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGATAACTGCCTGGGT	NA	False	NA	-8	True	AATAAA	-12	NA	101295684	101290994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_101291615_101292168_101292294_101295639
ENSMUSG00000051159.17_3	chrX	-	871	3	FSM	ENSMUSG00000051159.17	ENSMUST00000134887.8	607	3	61	-325	61	-8	multi-exon	FALSE	canonical	3	12	junction_2	97.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGATAACTGCCTGGGT	NA	False	NA	-8	True	AATAAA	-12	NA	101294491	101290994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_101291615_101292168_101292294_101294365
ENSMUSG00000051166.11_0	chr12	-	4737	7	FSM	ENSMUSG00000051166.11	ENSMUST00000222717.2	2136	7	-677	-1924	-677	-420	multi-exon	TRUE	canonical	3	28	junction_6	7.43863786814047	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATTCCAAAGAACTGTC	NA	False	NA	-21	True	AGTAAA	-4	NA	98761569	98753483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_98756646_98756871_98756973_98757535_98757690_98758282_98758387_98758774_98758938_98760372_98760546_98760689
ENSMUSG00000051166.11_12	chr12	-	2901	9	ISM	ENSMUSG00000051166.11	ENSMUST00000223282.2	7595	44	102036	-2	-468	2	3prime_fragment	FALSE	canonical	3	28	junction_6	7.06996287118964	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCAAGGAAGTTTTGTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	98765707	98755401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98756646_98756871_98756973_98757535_98757690_98758282_98758387_98758774_98758938_98760372_98760546_98760689_98760879_98762765_98762881_98765049
ENSMUSG00000051166.11_16	chr12	-	7526	42	NIC	ENSMUSG00000051166.11	novel	7595	44	NA	NA	39	-2	combination_of_known_junctions	FALSE	canonical	3	20	junction_9	7.29508892523777	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACATCGCATCAAGGAAG	NA	False	NA	NA	False	ATTAAA	-11	NA	98867704	98755409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_98756646_98756871_98756973_98757535_98757690_98758282_98758387_98758774_98758938_98760372_98760546_98760689_98760879_98762765_98762881_98765049_98765208_98767161_98767371_98768542_98768717_98771725_98771747_98776777_98776877_98782193_98782324_98784078_98784158_98790892_98791020_98791637_98791840_98793592_98793770_98794965_98795055_98797118_98797251_98797330_98797484_98803501_98803644_98807809_98807938_98808930_98809043_98810212_98810416_98817640_98817742_98818866_98818961_98822182_98822289_98824977_98825165_98826217_98826337_98826718_98826826_98827403_98827572_98829355_98829569_98831512_98831770_98837025_98837164_98839262_98839465_98840765_98840902_98842385_98842572_98847069_98847139_98848234_98848334_98853240_98853401_98867090
ENSMUSG00000051166.11_33	chr12	-	5259	33	NIC	ENSMUSG00000051166.11	novel	7595	44	NA	NA	39	-336	combination_of_known_junctions	FALSE	canonical	3	20	junction_30	6.85843174038351	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCATCTCTTTAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	98867704	98767035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_98767371_98768542_98768717_98771725_98771747_98776777_98776877_98782193_98782324_98784078_98784158_98790892_98791020_98791637_98791840_98793592_98793770_98794965_98795055_98797118_98797251_98797330_98797484_98803501_98803644_98807809_98807938_98808930_98809043_98810212_98810416_98817640_98817742_98818866_98818961_98822182_98822289_98824977_98825165_98826217_98826337_98826718_98826826_98827403_98827572_98829355_98829569_98831512_98831770_98837025_98837164_98839262_98839465_98840765_98840902_98842385_98842572_98847069_98847139_98848234_98848334_98853240_98853401_98867090
ENSMUSG00000051166.11_37	chr12	-	4336	25	ISM	ENSMUSG00000051166.11	ENSMUST00000223282.2	7595	44	38	37946	38	-11122	5prime_fragment	FALSE	canonical	3	20	junction_22	6.45927412502537	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCCTTTCATCAATATAAT	NA	False	NA	NA	False	AATAAA	-20	NA	98867705	98793349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98793770_98794965_98795055_98797118_98797251_98797330_98797484_98803501_98803644_98807809_98807938_98808930_98809043_98810212_98810416_98817640_98817742_98818866_98818961_98822182_98822289_98824977_98825165_98826217_98826337_98826718_98826826_98827403_98827572_98829355_98829569_98831512_98831770_98837025_98837164_98839262_98839465_98840765_98840902_98842385_98842572_98847069_98847139_98848234_98848334_98853240_98853401_98867090
ENSMUSG00000051166.11_38	chr12	-	2790	10	ISM	ENSMUSG00000051166.11	ENSMUST00000223282.2	7595	44	39	73236	39	-46412	5prime_fragment	FALSE	canonical	3	20	junction_7	6.39444203108363	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACAAAAGACAGTTCAG	NA	False	NA	NA	False	NA	NA	NA	98867704	98828639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98829569_98831512_98831770_98837025_98837164_98839262_98839465_98840765_98840902_98842385_98842572_98847069_98847139_98848234_98848334_98853240_98853401_98867090
ENSMUSG00000051166.11_55	chr12	-	7528	43	NIC	ENSMUSG00000051166.11	novel	7595	44	NA	NA	39	-15	combination_of_known_junctions	FALSE	canonical	3	10	junction_16	8.63074712399612	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCAGAAATGAACACAT	NA	False	NA	NA	False	NA	NA	NA	98867704	98755422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_98756646_98756871_98756973_98757535_98757690_98758282_98758387_98758774_98758938_98760372_98760546_98760689_98760879_98762765_98762881_98765049_98765208_98767161_98767371_98768542_98768717_98771725_98771747_98776777_98776877_98782193_98782324_98784078_98784158_98787858_98787874_98790892_98791020_98791637_98791840_98793592_98793770_98794965_98795055_98797118_98797251_98797330_98797484_98803501_98803644_98807809_98807938_98808930_98809043_98810212_98810416_98817640_98817742_98818866_98818961_98822182_98822289_98824977_98825165_98826217_98826337_98826718_98826826_98827403_98827572_98829355_98829569_98831512_98831770_98837025_98837164_98839262_98839465_98840765_98840902_98842385_98842572_98847069_98847139_98848234_98848334_98853240_98853401_98867090
ENSMUSG00000051166.11_6	chr12	-	1529	1	ISM	ENSMUSG00000051166.11	ENSMUST00000065716.8	9482	41	112411	428	3940	-428	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAATGGGAGCATTCCAAA	NA	False	NA	-29	True	TATAAA	-15	NA	98755020	98753491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_98753500_98755000
ENSMUSG00000051169.15_0	chr6	-	1246	9	FSM	ENSMUSG00000051169.15	ENSMUST00000113092.9	1269	9	8	15	-1	-5	multi-exon	FALSE	canonical	3	151	junction_2	15.858258889298	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATGAGAAAGCAGATGT	NA	False	NA	-23	True	AATAAA	-27	NA	113396293	113392294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113392684_113393267_113393408_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
ENSMUSG00000051169.15_3	chr6	-	1234	9	FSM	ENSMUSG00000051169.15	ENSMUST00000060634.14	1224	9	-13	3	-1	-3	multi-exon	FALSE	canonical	3	27	junction_2	50.3374549912885	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGAGAAAGCAGATGTTT	NA	False	NA	-21	True	AATAAA	-29	NA	113396293	113392292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113392684_113393267_113393394_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
ENSMUSG00000051169.15_4	chr6	-	1226	9	NIC	ENSMUSG00000051169.15	novel	1269	9	NA	NA	-1	2	combination_of_known_junctions	FALSE	canonical	2	2	junction_8	58.2880776831763	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGCAGATGTTTACCAA	NA	False	NA	-16	True	AATAAA	-34	NA	113396293	113392287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113392684_113393267_113393408_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395884_113396178
ENSMUSG00000051169.15_6	chr6	-	1319	8	NIC	ENSMUSG00000051169.15	novel	1269	9	NA	NA	4	-5	intron_retention	FALSE	canonical	3	151	junction_2	16.318263212907	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATGAGAAAGCAGATGT	NA	False	NA	-23	True	AATAAA	-27	NA	113396288	113392294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113392684_113393267_113393408_113393749_113393874_113394101_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
ENSMUSG00000051176.7_0	chr8	-	1770	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-11	13	-11	-13	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	3264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAACACTAGAAATGA	NA	False	NA	NA	False	AATAAA	-4	NA	43760028	43748116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
ENSMUSG00000051176.7_5	chr8	-	1757	4	FSM	ENSMUSG00000051176.7	ENSMUST00000209356.2	1744	4	-41	28	-11	-24	multi-exon	FALSE	canonical	3	204	junction_3	1933.09774426667	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAGGAAATAAAAC	NA	False	NA	NA	False	AAAAAG	-30	NA	43760028	43748127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_43749574_43753664_43753743_43757512_43757595_43759877
ENSMUSG00000051182.6_0	chr7	-	126	1	ISM	ENSMUSG00000051182.6	ENSMUST00000216750.2	2010	2	6262	56	1697	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAAATGTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	104244689	104244563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_104244600_104244700
ENSMUSG00000051184.8_0	chr7	+	1120	2	FSM	ENSMUSG00000051184.8	ENSMUST00000086349.5	1142	2	21	1	21	-1	multi-exon	FALSE	canonical	3	22	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCACTGTGTGTTCAGT	2961	False	NA	4	True	AATAAA	-14	NA	5018489	5021485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_5018560_5020435
ENSMUSG00000051185.10_0	chr1	+	1263	3	FSM	ENSMUSG00000051185.10	ENSMUST00000059975.8	2112	3	38	811	33	-811	multi-exon	FALSE	canonical	3	133	junction_2	1	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAAGTGGTACAGATAGA	NA	False	NA	2	True	AATAAA	-15	NA	95241385	95262198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_95241976_95252833_95252969_95261660
ENSMUSG00000051220.3_2	chrX	-	4040	2	FSM	ENSMUSG00000051220.3	ENSMUST00000056904.3	5302	2	20	1242	20	-1242	multi-exon	FALSE	canonical	3	249	junction_1	0	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGTTTCCATTCATTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	101200677	101186563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_101190440_101200513
ENSMUSG00000051220.3_3	chrX	-	2620	1	ISM	ENSMUSG00000051220.3	ENSMUST00000056904.3	5302	2	11514	1242	11514	-1242	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGTTTCCATTCATTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	101189183	101186563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_101186600_101189200
ENSMUSG00000051223.15_1	chr1	+	2833	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	242	801	8	-801	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	3293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTTATAGATCAGTCTT	899	False	NA	22	True	AATAAA	-17	NA	58432298	58445711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ENSMUSG00000051224.14_1	chrX	-	2191	1	ISM	ENSMUSG00000051224.14	ENSMUST00000112188.8	4050	5	8471	5	1390	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCTCTTATTCTCCAA	NA	False	NA	-7	True	AATAAA	-15	NA	165285003	165282812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_165282800_165285000
ENSMUSG00000051224.14_2	chrX	-	4014	5	FSM	ENSMUSG00000051224.14	ENSMUST00000112188.8	4050	5	25	11	25	-11	multi-exon	FALSE	canonical	3	63	junction_2	3.35410196624968	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTAAAAATCTCTTATT	NA	False	NA	-13	True	AATAAA	-9	NA	165293449	165282818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_165286402_165288701_165288833_165290704_165290743_165291901_165292003_165293288
ENSMUSG00000051224.14_4	chrX	-	5297	4	ISM	ENSMUSG00000051224.14	ENSMUST00000112188.8	4050	5	28	11	28	-11	intron_retention	FALSE	canonical	3	63	junction_2	3.09120616516523	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTAAAAATCTCTTATT	NA	False	NA	-13	True	AATAAA	-9	NA	165293446	165282818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_165286402_165288701_165288833_165290704_165290743_165291901
ENSMUSG00000051225.10_0	chr15	+	2256	4	FSM	ENSMUSG00000051225.10	ENSMUST00000160942.8	2876	4	293	327	-198	-327	multi-exon	FALSE	canonical	2	2	junction_1	4.49691252107735	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAAATTAA	9506	False	NA	NA	False	NA	NA	NA	57849107	57874078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_57849938_57856302_57856471_57858609_57858735_57872945
ENSMUSG00000051225.10_4	chr15	+	174	1	ISM	ENSMUSG00000051225.10	ENSMUST00000160942.8	2876	4	25097	320	8370	-320	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAATTAAAAAACTG	NA	False	NA	NA	False	NA	NA	NA	57873911	57874085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_57873900_57874100
ENSMUSG00000051232.14_0	chr11	-	1303	6	FSM	ENSMUSG00000051232.14	ENSMUST00000052566.8	1347	6	41	3	41	-3	multi-exon	FALSE	canonical	3	479	junction_5	35.6561355169065	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTTTATCTTTGGTCTT	1672	False	NA	-32	True	AATAAA	-18	NA	78402957	78397883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78398632_78399144_78399258_78399478_78399522_78400550_78400641_78401173_78401248_78402722
ENSMUSG00000051232.14_1	chr11	-	1526	5	NIC	ENSMUSG00000051232.14	novel	1347	6	NA	NA	41	-1	intron_retention	FALSE	canonical	3	479	junction_4	36.9425229241318	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATCTTTGGTCTTAA	1672	False	NA	-30	True	AATAAA	-20	NA	78402957	78397881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78398632_78399144_78399522_78400550_78400641_78401173_78401248_78402722
ENSMUSG00000051232.14_6	chr11	-	2550	4	NIC	ENSMUSG00000051232.14	novel	1347	6	NA	NA	41	-6	intron_retention	FALSE	canonical	3	479	junction_3	42.5519290592879	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTATTTTTATCTTTGGT	1672	False	NA	-35	True	AATAAA	-15	NA	78402957	78397886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_78398632_78399144_78400641_78401173_78401248_78402722
ENSMUSG00000051234.7_0	chr9	-	1123	3	FSM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	85	24	-2	-24	multi-exon	FALSE	canonical	3	1085	junction_1	10	460	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTAAATAATTTGAAAAAA	3798	False	NA	-24	True	ATTAAA	-40	NA	96360643	96353013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_96353906_96356010_96356059_96360460
ENSMUSG00000051235.11_0	chr12	-	1919	1	ISM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	24921	7	10008	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAATGATTTTAATCCT	NA	False	NA	-3	True	NA	NA	NA	11290846	11288927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_11288900_11290800
ENSMUSG00000051235.11_10	chr12	-	2923	13	ISM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	3320	2018	3320	632	3prime_fragment	FALSE	canonical	3	36	junction_2	6.23776580373311	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTATTATTCTTGAAAT	NA	False	NA	NA	False	TATAAA	-44	NA	11312447	11290938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407
ENSMUSG00000051235.11_2	chr12	-	3286	14	FSM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	-31	2013	0	637	multi-exon	FALSE	canonical	3	36	junction_2	6.04323672043149	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATTCTTGAAATGTCTT	NA	False	NA	NA	False	AATATA	-15	NA	11315798	11290933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
ENSMUSG00000051235.11_21	chr12	-	3144	14	NIC	ENSMUSG00000051235.11	novel	5268	14	NA	NA	-1	628	combination_of_known_junctions	FALSE	canonical	1	2	junction_13	12.9111666727709	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACATTTTATTATTCTTG	NA	False	NA	NA	False	TATAAA	-40	NA	11315799	11290942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315721
ENSMUSG00000051235.11_23	chr12	-	2224	13	ISM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	-22	3679	0	-1029	5prime_fragment	FALSE	canonical	3	36	junction_1	6.1913918736689	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATATTTTTCTTTCTTTTC	NA	False	NA	NA	False	AGTAAA	-21	NA	11315789	11292599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
ENSMUSG00000051235.11_25	chr12	-	1658	12	ISM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	-20	7198	2	1623	5prime_fragment	FALSE	canonical	3	39	junction_9	5.8124972229621	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATTCAAGTGCTTTTA	NA	False	NA	NA	False	AATAAA	-5	NA	11315787	11296118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
ENSMUSG00000051235.11_40	chr12	-	1283	10	ISM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	-45	10246	-10	-1425	5prime_fragment	FALSE	canonical	3	39	junction_7	6.06345051095211	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCACATACCAAAGACCTGA	NA	False	NA	NA	False	AATAAA	-13	NA	11315812	11299166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
ENSMUSG00000051235.11_47	chr12	-	3152	13	NIC	ENSMUSG00000051235.11	novel	5268	14	NA	NA	-8	637	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	13.6371632762178	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATTCTTGAAATGTCTT	NA	False	NA	NA	False	AATATA	-15	NA	11315775	11290933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11306838_11307016_11310882_11311070_11312407_11312595_11315587
ENSMUSG00000051235.11_8	chr12	-	4033	15	NNC	ENSMUSG00000051235.11	novel	5268	14	NA	NA	-5	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.8993355310596	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTGTTCATGTAAGAATG	NA	False	NA	-14	True	NA	NA	NA	11315807	11288938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_11289596_11290852_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
ENSMUSG00000051236.14_3	chr10	-	3680	7	FSM	ENSMUSG00000051236.14	ENSMUST00000092143.12	3843	7	152	11	152	-11	multi-exon	FALSE	canonical	0	0	junction_2	1.34370962471642	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAATGTCTCTCTTCTC	NA	False	NA	NA	False	AATAAA	-9	NA	120734854	120617011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_120620144_120627306_120627405_120661012_120661042_120685880_120685959_120687888_120687998_120706939_120707057_120734737
ENSMUSG00000051238.7_0	chr9	+	1827	2	FSM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	10	1	10	-1	multi-exon	FALSE	canonical	3	72	junction_1	0	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGGACTCTGGTGGTCT	NA	False	NA	7	True	NA	NA	NA	21867060	21869559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21867301_21867972
ENSMUSG00000051238.7_2	chr9	+	895	1	ISM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	1611	4	1611	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACATTGGACTCTGGTGG	NA	False	NA	4	True	NA	NA	NA	21868661	21869556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_21868700_21869600
ENSMUSG00000051243.15_0	chr9	-	3883	2	FSM	ENSMUSG00000051243.15	ENSMUST00000163200.3	4123	2	233	7	86	-2	multi-exon	FALSE	canonical	3	11	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGGACTCGGTGAGATTT	NA	False	NA	-6	True	AATAAA	-13	NA	58108765	58103586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_58107267_58108562
ENSMUSG00000051243.15_1	chr9	-	3872	3	FSM	ENSMUSG00000051243.15	ENSMUST00000114144.9	3880	3	2	6	2	-2	multi-exon	FALSE	canonical	2	3	junction_2	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGGACTCGGTGAGATTT	7225	False	NA	-6	True	AATAAA	-13	NA	58111600	58103586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_58107267_58108562_58108656_58111501
ENSMUSG00000051243.15_4	chr9	-	4066	4	NIC	ENSMUSG00000051243.15	novel	4303	4	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTCGGTGAGATTTTTGG	7225	False	NA	-2	True	AATAAA	-17	NA	58111600	58103582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_58107267_58107554_58107745_58108562_58108656_58111501
ENSMUSG00000051243.15_6	chr9	-	2463	1	ISM	ENSMUSG00000051243.15	ENSMUST00000163200.3	4123	2	2949	7	1806	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGGACTCGGTGAGATTT	NA	False	NA	-6	True	AATAAA	-13	NA	58106049	58103586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_58103600_58106000
ENSMUSG00000051246.4_0	chr5	+	6211	3	FSM	ENSMUSG00000051246.4_ENSMUSG00000029104.16	ENSMUST00000050535.2	2793	3	-3417	-1	-2590	1	multi-exon	FALSE	canonical	1	1	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGCCTGGAAGCCAGCT	NA	False	NA	NA	False	ATTAAA	-13	NA	35069841	35081184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_35075260_35078747_35079024_35080667
ENSMUSG00000051255.7_0	chr19	+	877	1	FSM	ENSMUSG00000051255.7	ENSMUST00000056396.7	633	1	-12	-232	-12	232	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAGGAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	23653199	23654076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_23653200_23654100
ENSMUSG00000051256.11_1	chr6	+	1128	2	FSM	ENSMUSG00000051256.11	ENSMUST00000101070.5	1201	2	53	20	12	0	multi-exon	FALSE	canonical	3	705	junction_1	0	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTAAGACTGTCCTGTG	NA	False	NA	13	True	AATAAA	-17	NA	113419582	113425170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113419759_113424218
ENSMUSG00000051256.11_3	chr6	+	1128	2	FSM	ENSMUSG00000051256.11	ENSMUST00000204254.2	1147	2	12	7	12	-7	multi-exon	FALSE	canonical	3	96	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATAAAGTTAAGACTG	NA	False	NA	6	True	AATAAA	-10	NA	113419582	113425163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113419766_113424218
ENSMUSG00000051256.11_6	chr6	+	712	1	ISM	ENSMUSG00000051256.11	ENSMUST00000101070.5	1201	2	4922	27	4881	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATAAAGTTAAGACTG	NA	False	NA	6	True	AATAAA	-10	NA	113424451	113425163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113424500_113425200
ENSMUSG00000051257.4_0	chrX	+	996	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	178	4	178	-4	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	1402	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACAGTTGTTTCACGTTA	NA	False	NA	16	True	AATAAA	-17	NA	138234609	138238914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_138235157_138237570_138237800_138238694
ENSMUSG00000051278.13_0	chr3	+	3956	6	FSM	ENSMUSG00000051278.13	ENSMUST00000195955.2	3804	6	-154	2	-10	-2	multi-exon	FALSE	canonical	3	40	junction_5	13.6	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGGTTTATGTATGTGC	NA	False	NA	NA	False	NA	NA	NA	127347127	127358485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544_127354731_127355123
ENSMUSG00000051278.13_12	chr3	+	5971	26	FSM	ENSMUSG00000051278.13	ENSMUST00000043108.9	7046	26	-10	1085	-10	-49	multi-exon	TRUE	canonical	1	17	junction_9	21.9453867589523	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGCATGCGAAAATGTGC	NA	False	NA	NA	False	NA	NA	NA	127347127	127410585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544_127354731_127355123_127356868_127361276_127361351_127366788_127366975_127375094_127375219_127377232_127377820_127378304_127378444_127379667_127379853_127381589_127381787_127383617_127383758_127389527_127389672_127392349_127392465_127394628_127394889_127396046_127396207_127400017_127400096_127402133_127402282_127405432_127405561_127406991_127407116_127408775_127408953_127409085_127409221_127409907_127410170_127410315
ENSMUSG00000051278.13_15	chr3	+	6082	25	NIC	ENSMUSG00000051278.13	novel	7046	26	NA	NA	5	115	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	23.1480740739556	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAGAGGAAAGGTGGACAC	NA	False	NA	NA	False	AATAAA	-18	NA	127347142	127410897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544_127354731_127355123_127356868_127361276_127361351_127375094_127375219_127377232_127377820_127378304_127378444_127379667_127379853_127381589_127381787_127383617_127383758_127389527_127389672_127392349_127392465_127394628_127394889_127396046_127396207_127400017_127400096_127402133_127402282_127405432_127405561_127406991_127407116_127408775_127408953_127409085_127409221_127409907_127410170_127410315
ENSMUSG00000051278.13_24	chr3	+	2711	1	NIC	ENSMUSG00000051278.13	novel	7153	25	NA	NA	8492	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTTTATGTATGTG	NA	False	NA	NA	False	NA	NA	NA	127355773	127358484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_127355800_127358500
ENSMUSG00000051278.13_38	chr3	+	1227	1	ISM	ENSMUSG00000051278.13	ENSMUST00000200490.5	7153	25	63301	0	22560	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGAATTCTTATGTGGAA	NA	False	NA	NA	False	ATTAAA	-15	NA	127410438	127411665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_127410400_127411700
ENSMUSG00000051278.13_8	chr3	+	925	5	ISM	ENSMUSG00000051278.13	ENSMUST00000195955.2	3804	6	-154	3426	-10	-3426	5prime_fragment	FALSE	canonical	3	63	junction_3	5.7227615711298	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127347127	127355061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544
ENSMUSG00000051285.18_1	chr1	+	4245	6	FSM	ENSMUSG00000051285.18	ENSMUST00000061280.17	5232	6	97	890	87	79	multi-exon	FALSE	canonical	3	103	junction_2	17.1650808329003	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTATCCAGTGGCCTGC	NA	False	NA	NA	False	AATAAA	-19	NA	7159240	7242962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_7159441_7190417_7190840_7217860_7217964_7231115_7231288_7233471_7233596_7239738
ENSMUSG00000051285.18_2	chr1	+	3867	5	FSM	ENSMUSG00000051285.18	ENSMUST00000182114.8	770	5	43	-3140	43	79	multi-exon	FALSE	canonical	3	49	junction_1	40.8495716011808	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTATCCAGTGGCCTGC	NA	False	NA	NA	False	AATAAA	-19	NA	7159196	7242962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_7159441_7217860_7217964_7231115_7231288_7233471_7233596_7239738
ENSMUSG00000051285.18_26	chr1	+	4794	3	FSM	ENSMUSG00000051285.18	ENSMUST00000182892.8	4207	3	-465	-122	-465	81	multi-exon	FALSE	canonical	3	143	junction_2	5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTATCCAGTGGCCTGCCT	NA	False	NA	NA	False	AATAAA	-21	NA	7229843	7242964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_7231288_7233471_7233596_7239738
ENSMUSG00000051285.18_29	chr1	+	2308	1	ISM	ENSMUSG00000051285.18	ENSMUST00000061280.17	5232	6	81514	887	9877	82	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATCCAGTGGCCTGCCTC	NA	False	NA	NA	False	AATAAA	-22	NA	7240657	7242965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_7240700_7243000
ENSMUSG00000051285.18_3	chr1	+	4028	6	NIC	ENSMUSG00000051285.18	novel	1153	5	NA	NA	74	79	combination_of_known_junctions	FALSE	canonical	3	23	junction_3	57.3006108169887	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTATCCAGTGGCCTGC	NA	False	NA	NA	False	AATAAA	-19	NA	7159227	7242962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_7159441_7217860_7217964_7225303_7225496_7231115_7231288_7233471_7233596_7239738
ENSMUSG00000051306.8_0	chr5	-	2120	4	ISM	ENSMUSG00000051306.8	ENSMUST00000053287.6	5151	18	16915	3	248	-3	3prime_fragment	FALSE	canonical	3	97	junction_1	5.90668171555645	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAACCGTCTCAGTTTTA	NA	False	NA	NA	False	TATAAA	-13	NA	143701120	143696082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_143697098_143697704_143697744_143699290_143699593_143700356
ENSMUSG00000051306.8_1	chr5	-	5142	18	FSM	ENSMUSG00000051306.8	ENSMUST00000053287.6	5151	18	1	8	1	-8	multi-exon	FALSE	canonical	3	67	junction_4	13.3323240679149	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTAAACAACCGTCTCAG	NA	False	NA	NA	False	TATAAA	-8	NA	143718034	143696087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143697098_143697704_143697744_143699290_143699593_143700356_143701836_143702331_143702427_143702528_143703237_143703678_143703833_143705248_143705350_143705481_143705623_143706031_143706144_143706902_143706986_143707387_143707459_143708041_143708110_143708863_143708967_143709649_143709761_143712243_143712445_143713534_143713782_143717917
ENSMUSG00000051314.12_0	chr7	-	2170	3	NIC	ENSMUSG00000051314.12	novel	2301	3	NA	NA	-50	1	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAATGTTCACGGGTT	3211	False	NA	NA	False	AATAAA	-15	NA	30523250	30517780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30519540_30520101_30520164_30522901
ENSMUSG00000051314.12_2	chr7	-	1565	1	ISM	ENSMUSG00000051314.12	ENSMUST00000053156.10	2301	3	3856	7	1058	2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAATGTTCACGGGTTT	7117	False	NA	NA	False	AATAAA	-16	NA	30519344	30517779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30517800_30519300
ENSMUSG00000051314.12_4	chr7	-	1800	2	FSM	ENSMUSG00000051314.12	ENSMUST00000186534.2	730	2	261	-1331	261	2	multi-exon	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAATGTTCACGGGTTT	6320	False	NA	NA	False	AATAAA	-16	NA	30520141	30517779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30519540_30520101
ENSMUSG00000051316.9_0	chr18	-	1737	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	34	1531	34	-1531	multi-exon	FALSE	canonical	3	1260	junction_1	0	1481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATGTTGTTCTATGAAT	NA	False	NA	-2	True	AATAAA	-21	NA	37777223	37775074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_37776586_37776997
ENSMUSG00000051316.9_1	chr18	-	1087	1	ISM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	1096	1531	1096	-1531	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATGTTGTTCTATGAAT	NA	False	NA	-2	True	AATAAA	-21	NA	37776161	37775074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_37775100_37776200
ENSMUSG00000051319.7_0	chr2	-	428	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	5	367	5	-367	multi-exon	FALSE	canonical	3	537	junction_1	0	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACATCTTTGAATCTTT	NA	False	NA	-20	True	AATAAA	-4	NA	127634403	127633674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127633753_127634053
ENSMUSG00000051323.17_0	chrX	-	3232	1	ISM	ENSMUSG00000051323.17	ENSMUST00000149154.8	10289	6	102871	25	1895	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTAATGAAGTTTTGG	NA	False	NA	NA	False	ATTAAA	-12	NA	132486865	132483633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_132483600_132486900
ENSMUSG00000051323.17_1	chrX	-	4159	5	FSM	ENSMUSG00000051323.17	ENSMUST00000167944.8	8407	5	-502	4750	-502	-4745	multi-exon	FALSE	canonical	3	12	junction_2	5.78791845139511	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGCAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	132588515	132488373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_132489327_132526017_132526188_132533643_132533703_132581829_132582158_132585866
ENSMUSG00000051323.17_2	chrX	-	4696	6	NIC	ENSMUSG00000051323.17	novel	10289	6	NA	NA	825	-4745	combination_of_known_junctions	FALSE	canonical	3	8	junction_4	6.04648658313239	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGCAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	132588911	132488373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_132489327_132526017_132526188_132533643_132533703_132581829_132582158_132582840_132582982_132585866
ENSMUSG00000051323.17_3	chrX	-	4142	5	FSM	ENSMUSG00000051323.17	ENSMUST00000060309.10	7035	5	-1853	4746	-482	-4745	multi-exon	FALSE	canonical	3	7	junction_2	7.29297607290741	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGCAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	132588495	132488373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_132489327_132526017_132526191_132533643_132533703_132581829_132582158_132585866
ENSMUSG00000051323.17_6	chrX	-	2915	6	FSM	ENSMUSG00000051323.17	ENSMUST00000149154.8	10289	6	2609	4765	-485	-4745	multi-exon	FALSE	canonical	3	7	junction_2	6.79411510058521	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGCAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	132587127	132488373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_132489327_132526017_132526191_132533643_132533703_132581829_132582158_132582840_132582982_132585866
ENSMUSG00000051329.14_0	chr2	+	5049	36	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	2177	1	2177	-1	3prime_fragment	FALSE	canonical	3	459	junction_11	64.3521941969284	1130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTGTATATTAAGATTTA	NA	False	NA	15	True	AATAAA	-17	NA	90509735	90566671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532724_90532891_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
ENSMUSG00000051331.17_0	chr6	-	3299	16	ISM	ENSMUSG00000051331.17	ENSMUST00000188181.7	7577	42	130467	686	439	-63	3prime_fragment	TRUE	canonical	0	0	junction_2	1.02415276638248	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGAGTTTGGTTGAGCAT	NA	False	NA	NA	False	AGTAAA	-18	NA	118604468	118569965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_118571156_118572816_118573153_118574888_118574993_118575621_118575729_118578093_118578220_118579002_118579356_118580808_118580944_118581397_118581526_118583173_118583276_118587448_118587552_118589527_118589625_118590203_118590332_118590872_118591039_118601327_118601420_118602449_118602516_118604402
ENSMUSG00000051335.7_0	chr13	-	3466	1	ISM	ENSMUSG00000051335.7	ENSMUST00000055341.7	6928	2	105460	2	104693	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGATTCCAGCCTGGTC	3409	False	NA	-6	True	AATAAA	-13	NA	43352188	43348722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_43348700_43352200
ENSMUSG00000051339.11_0	chr5	-	3612	1	ISM	ENSMUSG00000051339.11	ENSMUST00000212276.2	5864	8	48050	2	48050	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGAGGCTGCATGTCC	NA	False	NA	0	True	AATAAA	-18	NA	113237802	113234190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113234200_113237800
ENSMUSG00000051339.11_1	chr5	-	3824	9	ISM	ENSMUSG00000051339.11	ENSMUST00000211733.2	10238	13	38156	2920	-19729	-2920	3prime_fragment	FALSE	canonical	3	16	junction_2	5.44144971491973	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTTGATCTAGTTGCTT	9148	False	NA	-3	True	NA	NA	NA	113330946	113237108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113238891_113240280_113240364_113240967_113241111_113241831_113241951_113243455_113243631_113245463_113245705_113249324_113249444_113323070_113323206_113329919
ENSMUSG00000051339.11_10	chr5	-	7353	13	FSM	ENSMUSG00000051339.11	ENSMUST00000211733.2	10238	13	-34	2919	-34	-2919	multi-exon	FALSE	canonical	1	1	junction_11	8.88194172964949	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGATCTAGTTGCTTG	NA	False	NA	-2	True	NA	NA	NA	113369136	113237107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_113238891_113240280_113240364_113240967_113241111_113241831_113241951_113243455_113243631_113245463_113245705_113249324_113249444_113323070_113323206_113329919_113332584_113336151_113336240_113338469_113340066_113341626_113341774_113369076
ENSMUSG00000051339.11_12	chr5	-	7481	12	NIC	ENSMUSG00000051339.11	novel	10238	13	NA	NA	-17	-2627	combination_of_known_splicesites	FALSE	canonical	2	2	junction_11	7.42343842276131	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGCAACATTCTACTC	NA	False	NA	NA	False	NA	NA	NA	113369119	113236815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_113238891_113240280_113240364_113240967_113241111_113241831_113241951_113243455_113243631_113245463_113245705_113249324_113249444_113323070_113323206_113329919_113332584_113336151_113336240_113338469_113340066_113369076
ENSMUSG00000051339.11_2	chr5	-	8406	12	NNC	ENSMUSG00000051339.11	novel	10238	13	NA	NA	-12	-1694	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_11	7.20192811648668	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGTAAATTGGGGAGGA	NA	False	NA	NA	False	NA	NA	NA	113369114	113235882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_113238891_113240280_113240364_113240967_113241111_113241831_113241951_113243455_113243631_113245463_113245705_113249324_113249444_113323070_113323206_113329919_113332584_113336151_113336240_113338469_113340063_113369076
ENSMUSG00000051339.11_3	chr5	-	7050	11	ISM	ENSMUSG00000051339.11	ENSMUST00000211733.2	10238	13	29445	2607	-28440	-2607	3prime_fragment	FALSE	canonical	3	16	junction_2	4.88773976393998	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATTTTGAGTCTAACTTG	7996	False	NA	NA	False	NA	NA	NA	113339657	113236795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_113238891_113240280_113240364_113240967_113241111_113241831_113241951_113243455_113243631_113245463_113245705_113249324_113249444_113323070_113323206_113329919_113332584_113336151_113336240_113338469
ENSMUSG00000051339.11_5	chr5	-	7352	13	NNC	ENSMUSG00000051339.11	novel	10238	13	NA	NA	-36	-2919	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_11	8.71899267882095	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGATCTAGTTGCTTG	NA	False	NA	-2	True	NA	NA	NA	113369138	113237107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_113238891_113240280_113240364_113240967_113241111_113241831_113241951_113243455_113243631_113245463_113245705_113249324_113249444_113323070_113323206_113329919_113332584_113336151_113336240_113338469_113340063_113341626_113341774_113369076
ENSMUSG00000051341.7_1	chr17	+	3147	9	Fusion	ENSMUSG00000057409.8_ENSMUSG00000051341.7	novel	3065	5	NA	NA	-9	142	multi-exon	FALSE	canonical	1	2	junction_5	64.6563028636807	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGTAACTGTGGGGAAA	1466	False	NA	NA	False	AATAAA	-7	NA	21709250	21782470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_+_21709528_21711487_21711579_21720472_21720565_21742853_21742938_21748201_21748329_21758834_21758933_21775246_21775338_21777396_21777524_21780310
ENSMUSG00000051341.7_3	chr17	+	2847	5	NNC	ENSMUSG00000051341.7	novel	2175	3	NA	NA	-3201	143	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.10327780786685	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTAACTGTGGGGAAAG	NA	False	NA	NA	False	AATAAA	-8	NA	21752599	21782471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_21752970_21758834_21758933_21775246_21775338_21777396_21777524_21780310
ENSMUSG00000051341.7_5	chr17	+	2693	5	FSM	ENSMUSG00000051341.7	ENSMUST00000233281.2	3164	5	79	392	79	143	multi-exon	FALSE	canonical	3	13	junction_3	0.707106781186548	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTAACTGTGGGGAAAG	NA	False	NA	NA	False	AATAAA	-8	NA	21755879	21782471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21756096_21758834_21758933_21775246_21775338_21777396_21777524_21780310
ENSMUSG00000051343.12_1	chr6	-	6125	6	FSM	ENSMUSG00000051343.12	ENSMUST00000204087.2	6119	6	-8	2	-8	-2	multi-exon	FALSE	canonical	3	80	junction_3	21.2188595357997	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCAGCTTGTGTGTTTG	NA	False	NA	-4	True	AATAAA	-14	NA	85351624	85311950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85314209_85314462_85314653_85317324_85319344_85324761_85325438_85325536_85325974_85351079
ENSMUSG00000051343.12_3	chr6	-	3513	3	ISM	ENSMUSG00000051343.12	ENSMUST00000204087.2	6119	6	33228	1	231	-1	3prime_fragment	FALSE	canonical	3	103	junction_1	16.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCAGCTTGTGTGTTTGT	NA	False	NA	-3	True	AATAAA	-15	NA	85318388	85311949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_85314209_85314462_85314653_85317324
ENSMUSG00000051343.12_5	chr6	-	4686	4	ISM	ENSMUSG00000051343.12	ENSMUST00000204087.2	6119	6	26638	0	-6359	0	3prime_fragment	FALSE	canonical	3	80	junction_3	22.9830855679176	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCTTGTGTGTTTGTT	8505	False	NA	-2	True	AATAAA	-16	NA	85324978	85311948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_85314209_85314462_85314653_85317324_85319344_85324761
ENSMUSG00000051343.12_6	chr6	-	4109	5	FSM	ENSMUSG00000051343.12	ENSMUST00000060837.10	4035	5	-81	7	-11	-2	multi-exon	FALSE	canonical	3	27	junction_2	41.9344726925235	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCAGCTTGTGTGTTTG	NA	False	NA	-4	True	AATAAA	-14	NA	85351627	85311950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85314209_85314462_85314653_85324761_85325438_85325536_85325974_85351079
ENSMUSG00000051343.12_9	chr6	-	1542	1	FSM	ENSMUSG00000076012.3	ENSMUST00000102058.3	82	1	-135	-1325	-135	1325	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCTTGTGTGTTTGTT	NA	False	NA	-2	True	AATAAA	-16	NA	85313490	85311948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85311900_85313500
ENSMUSG00000051344.14_0	chr1	-	3768	1	ISM	ENSMUSG00000051344.14	ENSMUST00000097713.2	8562	8	163931	5	43871	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACTTTCTCTCATATCA	NA	False	NA	-10	True	AATAAA	-10	NA	64832052	64828284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_64828300_64832100
ENSMUSG00000051344.14_1	chr1	-	4637	8	FSM	ENSMUSG00000051344.14	ENSMUST00000097713.2	8562	8	76	3849	-21	839	multi-exon	FALSE	canonical	3	14	junction_5	6.03391773769796	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCCTCAGAGAACAGAACAT	NA	False	NA	NA	False	AATACA	-16	NA	64995907	64832128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_64834374_64859094_64859253_64900345_64900410_64922287_64922482_64931910_64932057_64960708_64961642_64976855_64977699_64995853
ENSMUSG00000051344.14_3	chr1	-	8053	7	ISM	ENSMUSG00000051344.14	ENSMUST00000097713.2	8562	8	18662	2	-10065	-2	3prime_fragment	FALSE	canonical	3	14	junction_5	5.52016505389306	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTCTCTCATATCAGCT	NA	False	NA	-7	True	AATAAA	-13	NA	64977321	64828281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_64834374_64859094_64859253_64900345_64900410_64922287_64922482_64931910_64932057_64960708_64961642_64976855
ENSMUSG00000051344.14_4	chr1	-	5933	8	NIC	ENSMUSG00000051344.14	novel	8562	8	NA	NA	-10	2066	combination_of_known_junctions	FALSE	canonical	2	4	junction_7	8.71311467541538	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCAAAAAAAAAAAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	64995896	64830901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_64834374_64859094_64859253_64900345_64900410_64922287_64922482_64931910_64932057_64960708_64961642_64976855_64977699_64995773
ENSMUSG00000051344.14_8	chr1	-	6868	6	ISM	ENSMUSG00000051344.14	ENSMUST00000097713.2	8562	8	35058	5	6331	-5	3prime_fragment	FALSE	canonical	3	14	junction_5	5.69209978830308	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACTTTCTCTCATATCA	NA	False	NA	-10	True	AATAAA	-10	NA	64960925	64828284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_64834374_64859094_64859253_64900345_64900410_64922287_64922482_64931910_64932057_64960708
ENSMUSG00000051346.10_0	chr10	-	1568	2	FSM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	6	9	6	-9	multi-exon	FALSE	canonical	3	299	junction_1	0	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAAAATACTCTGTCTA	NA	False	NA	-9	True	AATAAA	-32	NA	128047670	128045785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128047261_128047577
ENSMUSG00000051346.10_1	chr10	-	1017	1	ISM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	874	9	874	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAAAATACTCTGTCTA	NA	False	NA	-9	True	AATAAA	-32	NA	128046802	128045785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128045800_128046800
ENSMUSG00000051351.15_0	chr4	+	4400	3	FSM	ENSMUSG00000051351.15	ENSMUST00000130658.2	791	3	-15	-3594	-15	-100	multi-exon	FALSE	canonical	3	10	junction_1	4	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAAAACCACTGAGTT	NA	False	NA	7	True	ATTAAA	-13	NA	136013399	136021153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_136013793_136014499_136014627_136017273
ENSMUSG00000051351.15_2	chr4	+	4516	3	FSM	ENSMUSG00000051351.15	ENSMUST00000069195.5	4639	3	23	100	-14	-100	multi-exon	FALSE	canonical	2	10	junction_1	4	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAAAACCACTGAGTT	NA	False	NA	7	True	ATTAAA	-13	NA	136013400	136021153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_136013793_136014382_136014627_136017273
ENSMUSG00000051351.15_4	chr4	+	3448	1	ISM	ENSMUSG00000051351.15	ENSMUST00000069195.5	4639	3	4334	94	4297	-94	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCACTGAGTTATCTTG	NA	False	NA	13	True	ATTAAA	-19	NA	136017711	136021159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_136017700_136021200
ENSMUSG00000051355.19_1	chr11	-	767	3	FSM	ENSMUSG00000051355.19	ENSMUST00000159081.8	4508	3	124	3617	-6	6	multi-exon	FALSE	canonical	3	2089	junction_1	53.5	531	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAAACCTCTCAA	NA	False	NA	-25	True	AATATA	-16	NA	22932258	22849752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_22850058_22906410_22906693_22932078
ENSMUSG00000051359.16_2	chr15	-	3253	5	NIC	ENSMUSG00000051359.16	novel	3538	7	NA	NA	73322	0	intron_retention	FALSE	canonical	1	2	junction_2	2.12132034355964	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATCATTGTCTGGAACAT	NA	False	NA	-6	True	ATTAAA	-16	NA	37661292	37366510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_37369170_37372359_37372466_37397300_37397698_37563634_37563709_37661275
ENSMUSG00000051359.16_3	chr15	-	3230	4	ISM	ENSMUSG00000051359.16	ENSMUST00000153775.9	794	6	170905	-2575	-104105	-7	3prime_fragment	FALSE	canonical	1	2	junction_2	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTAATATCATTGTCT	NA	False	NA	-13	True	ATTAAA	-9	NA	37563709	37366517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_37369170_37372359_37372466_37397300_37397698_37563634
ENSMUSG00000051367.9_0	chr12	-	2677	2	FSM	ENSMUSG00000051367.9	ENSMUST00000050029.8	3316	2	499	140	499	-140	multi-exon	FALSE	canonical	3	15	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGATAACAGGGTTGGCTTG	9094	False	NA	NA	False	ATTAAA	-10	NA	73093454	73088740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_73090604_73092640
ENSMUSG00000051367.9_1	chr12	-	1186	1	ISM	ENSMUSG00000051367.9	ENSMUST00000050029.8	3316	2	4023	144	-341	-144	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGGATAACAGGGTTGG	NA	False	NA	NA	False	ATTAAA	-6	NA	73089930	73088744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_73088700_73089900
ENSMUSG00000051373.6_0	chr2	+	1904	2	FSM	ENSMUSG00000051373.6	ENSMUST00000057423.6	1947	2	31	12	-6	0	multi-exon	FALSE	canonical	2	5	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAGCATCCTTGTCCT	NA	False	NA	NA	False	AATACA	-10	NA	31985570	32000820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31986275_31999620
ENSMUSG00000051373.6_1	chr2	+	2054	3	FSM	ENSMUSG00000051373.6	ENSMUST00000146502.2	1439	3	-615	0	12	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAGCATCCTTGTCCT	NA	False	NA	NA	False	AATACA	-10	NA	31985551	32000820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31986275_31998482_31998614_31999620
ENSMUSG00000051375.16_1	chr18	-	3878	3	FSM	ENSMUSG00000051375.16	ENSMUST00000159405.3	3880	3	-1	3	-1	-3	multi-exon	FALSE	canonical	1	2	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTTTTGGTTTCTTATTT	5092	False	NA	NA	False	AATAAA	-14	NA	38345024	38329749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_38332582_38335796_38336660_38344841
ENSMUSG00000051378.11_0	chr11	-	3303	16	FSM	ENSMUSG00000051378.11	ENSMUST00000021311.10	3326	16	21	2	-15	-2	multi-exon	FALSE	canonical	3	261	junction_10	31.928809700471	595	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACTCTGGAAAGTTAGTG	3745	False	NA	-9	True	AATAAA	-30	NA	102815929	102796356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102797103_102797321_102797408_102797821_102797903_102798938_102799465_102799712_102799919_102803179_102803296_102803745_102803915_102804275_102804377_102804509_102804585_102805075_102805253_102805364_102805563_102805640_102805752_102805975_102806081_102806368_102806527_102807014_102807342_102815808
ENSMUSG00000051379.13_0	chr2	-	2835	1	ISM	ENSMUSG00000051379.13	ENSMUST00000110057.3	3977	3	10412	25	10343	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAGAAATGTGGCAT	NA	False	NA	-24	True	AATAAA	-11	NA	140502977	140500142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_140500100_140503000
ENSMUSG00000051379.13_1	chr2	-	3928	3	FSM	ENSMUSG00000051379.13	ENSMUST00000110057.3	3977	3	24	25	5	-25	multi-exon	FALSE	canonical	3	47	junction_1	10.5	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAGAAATGTGGCAT	NA	False	NA	-24	True	AATAAA	-11	NA	140513365	140500142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_140503672_140505180_140505380_140513165
ENSMUSG00000051379.13_2	chr2	-	4481	3	FSM	ENSMUSG00000051379.13	ENSMUST00000056760.4	3334	3	-47	-1100	3	-27	multi-exon	FALSE	canonical	3	10	junction_1	29	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAATAAAAGAAATGTGGC	NA	False	NA	-26	True	AATAAA	-9	NA	140513367	140500144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_140503672_140504627_140505380_140513165
ENSMUSG00000051390.11_0	chr17	+	2560	2	FSM	ENSMUSG00000051390.11	ENSMUST00000174463.2	387	2	7	-2180	7	-3	multi-exon	FALSE	canonical	3	17	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTGGCTTCCCAACACC	NA	False	NA	8	True	ATTAAA	-17	NA	34134884	34138296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34134939_34135790
ENSMUSG00000051390.11_1	chr17	+	2594	2	FSM	ENSMUSG00000051390.11	ENSMUST00000053429.11	2612	2	17	1	17	-1	multi-exon	FALSE	canonical	3	107	junction_1	0	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGCTTCCCAACACCCC	NA	False	NA	10	True	ATTAAA	-19	NA	34135161	34138298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34135248_34135790
ENSMUSG00000051390.11_2	chr17	+	2085	1	ISM	ENSMUSG00000051390.11	ENSMUST00000053429.11	2612	2	1069	1	1069	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGCTTCCCAACACCCC	507	False	NA	10	True	ATTAAA	-19	NA	34136213	34138298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34136200_34138300
ENSMUSG00000051391.10_0	chr5	-	2386	1	NIC	ENSMUSG00000051391.10	novel	1610	3	NA	NA	23754	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	474	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCGGCGGTGCCCAGCT	NA	False	NA	-28	True	AATAAA	-12	NA	135939650	135937264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_135937300_135939600
ENSMUSG00000051391.10_1	chr5	-	3516	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	2	2	0	-2	multi-exon	FALSE	canonical	3	925	junction_1	0	2099	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCGGCGGTGCCCAGCT	NA	False	NA	-28	True	AATAAA	-12	NA	135963451	135937264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135940506_135963176
ENSMUSG00000051396.16_0	chr2	-	2521	1	ISM	ENSMUSG00000051396.16	ENSMUST00000124331.8	4314	5	5709	1	5709	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTGGGTTTGTCTACTT	9708	False	NA	NA	False	AATAAA	-18	NA	3508085	3505564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_3505600_3508100
ENSMUSG00000051396.16_1	chr2	-	4242	5	FSM	ENSMUSG00000051396.16	ENSMUST00000140494.2	2390	5	28	-1880	-5	-2	multi-exon	FALSE	canonical	3	6	junction_1	525.594425389007	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTGGGTTTGTCTACT	3994	False	NA	NA	False	AATAAA	-17	NA	3513799	3505565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_3508787_3509329_3510058_3512051_3512135_3512210_3512292_3513670
ENSMUSG00000051396.16_2	chr2	-	4324	5	FSM	ENSMUSG00000051396.16	ENSMUST00000124331.8	4314	5	-14	4	-14	-4	multi-exon	FALSE	canonical	1	2	junction_2	532.771702983557	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTTGTGGGTTTGTCTA	3985	False	NA	NA	False	AATAAA	-15	NA	3513808	3505567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_3508787_3509329_3510133_3512051_3512135_3512210_3512292_3513670
ENSMUSG00000051396.16_3	chr2	-	4776	4	NIC	ENSMUSG00000051396.16	novel	2390	5	NA	NA	1	-5	intron_retention	FALSE	canonical	3	31	junction_1	489.582361701164	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGAGTTGTGGGTTTGTCT	4000	False	NA	NA	False	AATAAA	-14	NA	3513793	3505568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_3510058_3512051_3512135_3512210_3512292_3513670
ENSMUSG00000051396.16_4	chr2	-	4907	4	NIC	ENSMUSG00000051396.16	novel	4314	5	NA	NA	-22	-5	intron_retention	FALSE	canonical	1	2	junction_1	503.252311359708	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGAGTTGTGGGTTTGTCT	3944	False	NA	NA	False	AATAAA	-14	NA	3513849	3505568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_3510133_3512051_3512135_3512210_3512292_3513670
ENSMUSG00000051396.16_7	chr2	-	4130	2	ISM	ENSMUSG00000051396.16	ENSMUST00000124331.8	4314	5	3552	6	3552	-6	3prime_fragment	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGAGTTGTGGGTTTGTC	7551	False	NA	NA	False	AATAAA	-13	NA	3510242	3505569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_3508787_3509329
ENSMUSG00000051403.10_0	chr7	-	2949	13	FSM	ENSMUSG00000051403.10	ENSMUST00000058444.10	3816	13	866	1	866	-1	multi-exon	FALSE	canonical	3	79	junction_4	17.5752351019521	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGTGCCTCTGTTTCCTG	8380	False	NA	-7	True	AATAAA	-14	NA	19296135	19264725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19265352_19265431_19265519_19265708_19266451_19266571_19266739_19266842_19266985_19267888_19268002_19268295_19268452_19268531_19268683_19268913_19269034_19269415_19269517_19269633_19269680_19271294_19271393_19295735
ENSMUSG00000051403.10_1	chr7	-	3083	12	NIC	ENSMUSG00000051403.10	novel	3816	13	NA	NA	853	-1	intron_retention	FALSE	canonical	3	79	junction_3	17.4933281260491	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGTGCCTCTGTTTCCTG	8367	False	NA	-7	True	AATAAA	-14	NA	19296148	19264725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_19265352_19265431_19265519_19265708_19266739_19266842_19266985_19267888_19268002_19268295_19268452_19268531_19268683_19268913_19269034_19269415_19269517_19269633_19269680_19271294_19271393_19295735
ENSMUSG00000051403.10_2	chr7	-	3200	11	NIC	ENSMUSG00000051403.10	novel	3816	13	NA	NA	840	-1	intron_retention	FALSE	canonical	3	100	junction_7	14.6574213284602	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGTGCCTCTGTTTCCTG	8354	False	NA	-7	True	AATAAA	-14	NA	19296161	19264725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_19265352_19265431_19265519_19265708_19266985_19267888_19268002_19268295_19268452_19268531_19268683_19268913_19269034_19269415_19269517_19269633_19269680_19271294_19271393_19295735
ENSMUSG00000051403.10_4	chr7	-	3069	12	NIC	ENSMUSG00000051403.10	novel	3816	13	NA	NA	850	-1	intron_retention	FALSE	canonical	3	93	junction_3	15.4117053292952	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGTGCCTCTGTTTCCTG	8364	False	NA	-7	True	AATAAA	-14	NA	19296151	19264725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_19265352_19265431_19265519_19265708_19266451_19266571_19266985_19267888_19268002_19268295_19268452_19268531_19268683_19268913_19269034_19269415_19269517_19269633_19269680_19271294_19271393_19295735
ENSMUSG00000051413.18_0	chr2	-	3576	1	ISM	ENSMUSG00000051413.18	ENSMUST00000056924.14	5485	3	10081	11	6563	2	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCTTTGCAGTTTTGAA	NA	False	NA	-10	True	ATTAAA	-13	NA	153073265	153069689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_153069700_153073300
ENSMUSG00000051413.18_2	chr2	-	5416	3	FSM	ENSMUSG00000051413.18	ENSMUST00000056924.14	5485	3	54	15	54	-2	multi-exon	FALSE	canonical	3	22	junction_1	0.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATGTGCTTTGCAGTTT	7358	False	NA	-14	True	ATTAAA	-9	NA	153083292	153069693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_153074640_153077719_153078093_153083195
ENSMUSG00000051427.15_0	chr11	-	4986	12	FSM	ENSMUSG00000051427.15	ENSMUST00000093381.11	5015	12	24	5	-15	-5	multi-exon	FALSE	canonical	1	1	junction_10	2.2672661660618	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAACATTTGTTTTGTGTT	8517	False	NA	-9	True	ATTAAA	-11	NA	4110267	4091127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4093936_4094025_4094115_4094509_4094650_4096233_4096403_4096541_4096719_4097168_4097360_4097699_4097778_4098438_4099085_4099930_4100103_4101671_4101931_4102908_4103057_4110158
ENSMUSG00000051427.15_1	chr11	-	1094	1	ISM	ENSMUSG00000051427.15	ENSMUST00000137060.2	3885	6	5446	3	5446	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATTTGTTTTGTGTTTT	3173	False	NA	-7	True	ATTAAA	-13	NA	4092219	4091125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_4091100_4092200
ENSMUSG00000051435.12_11	chr4	-	1378	8	FSM	ENSMUSG00000051435.12	ENSMUST00000036701.8	1366	8	-26	14	-26	-14	multi-exon	FALSE	canonical	2	6	junction_4	3.33197251134017	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTGATACATGAATGATAG	3690	False	NA	NA	False	AGTAAA	-15	NA	141660426	141643613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141643864_141645584_141645692_141646058_141646144_141648047_141648274_141649554_141649729_141655690_141655796_141656840_141656949_141660103
ENSMUSG00000051435.12_9	chr4	-	2760	10	ISM	ENSMUSG00000051435.12	ENSMUST00000105780.8	4809	33	-17	71709	-2	728	5prime_fragment	TRUE	canonical	0	0	junction_4	2.48451997499977	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAATCACCACAGTCA	1102	False	NA	NA	False	AATAAA	-22	NA	141742395	141689457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141690829_141691895_141691986_141700099_141700231_141701590_141701715_141709458_141709702_141712786_141712897_141718410_141718652_141729701_141729909_141738855_141738963_141742259
ENSMUSG00000051439.8_0	chr18	-	1189	1	FSM	ENSMUSG00000051439.8	ENSMUST00000237042.2	868	1	481	-802	481	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGTGTTTGTTGGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	36859310	36858121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_36858100_36859300
ENSMUSG00000051444.10_0	chr3	+	2439	2	FSM	ENSMUSG00000051444.10	ENSMUST00000057975.8	2433	2	-8	2	-8	-2	multi-exon	FALSE	canonical	3	15	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAACTGCCATTCTGTTTT	1243	False	NA	5	True	AATAAA	-17	NA	37366694	37375597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_37366735_37373198
ENSMUSG00000051444.10_1	chr3	+	2355	2	FSM	ENSMUSG00000051444.10	ENSMUST00000108121.4	2348	2	-12	5	-10	-2	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAACTGCCATTCTGTTTT	1241	False	NA	5	True	AATAAA	-17	NA	37366692	37375597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_37366735_37373284
ENSMUSG00000051444.10_5	chr3	+	2220	1	ISM	ENSMUSG00000051444.10	ENSMUST00000057975.8	2433	2	6672	5	6670	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAATAACTGCCATTCTGT	6486	False	NA	2	True	AATAAA	-14	NA	37373374	37375594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_37373400_37375600
ENSMUSG00000051451.7_0	chr7	+	2665	3	FSM	ENSMUSG00000051451.7	ENSMUST00000107206.3	891	3	-853	-921	87	635	multi-exon	FALSE	canonical	3	58	junction_1	21.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATAAAACTGTTGTCTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	90092023	90095947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_90093296_90093507_90093586_90094632
ENSMUSG00000051451.7_1	chr7	+	3924	1	FSM	ENSMUSG00000051451.7	ENSMUST00000061767.5	3376	1	87	-635	87	635	mono-exon	FALSE	NA	NA	NA	NA	NA	275	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATAAAACTGTTGTCTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	90092023	90095947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_90092000_90095900
ENSMUSG00000051451.7_2	chr7	+	2883	2	FSM	ENSMUSG00000051451.7	ENSMUST00000143408.3	1380	2	-863	-640	86	640	multi-exon	FALSE	canonical	3	101	junction_1	0	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGTTGTCTTACTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	90092022	90095952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_90093586_90094632
ENSMUSG00000051451.7_3	chr7	+	1940	4	FSM	ENSMUSG00000051451.7	ENSMUST00000207252.2	873	4	-1071	4	87	-4	multi-exon	FALSE	canonical	3	27	junction_3	30.3424894606007	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGATTAGTGTCTTAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	90092023	90096925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_90093296_90093507_90093586_90094632_90094702_90096404
ENSMUSG00000051451.7_7	chr7	+	2774	3	ISM	ENSMUSG00000051451.7	ENSMUST00000208379.2	1269	4	-1063	1261	87	629	5prime_fragment	FALSE	canonical	0	0	junction_1	50.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGATTAATATAAAACTGTT	NA	False	NA	NA	False	ATTAAA	-7	NA	90092023	90095941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_90093411_90093507_90093586_90094632
ENSMUSG00000051455.14_1	chr11	+	4557	8	NIC	ENSMUSG00000051455.14	novel	4573	8	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	10.6999904634709	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTTAGTTTCATTTTT	NA	False	NA	3	True	AATAAA	-13	NA	102556369	102573063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102556597_102557161_102557312_102559127_102559286_102563009_102563115_102564864_102566738_102567559_102567695_102570757_102570939_102571335
ENSMUSG00000051455.14_11	chr11	+	2884	4	ISM	ENSMUSG00000051455.14	ENSMUST00000100378.4	4573	8	9484	0	9449	0	3prime_fragment	FALSE	canonical	3	30	junction_2	2.86744175568088	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTTAGTTTCATTTTT	9393	False	NA	3	True	AATAAA	-13	NA	102565897	102573063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_102566738_102567559_102567695_102570757_102570939_102571335
ENSMUSG00000051455.14_2	chr11	+	4617	8	FSM	ENSMUSG00000051455.14	ENSMUST00000100378.4	4573	8	-44	0	-44	0	multi-exon	FALSE	canonical	3	15	junction_4	7.57277616039918	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTTAGTTTCATTTTT	NA	False	NA	3	True	AATAAA	-13	NA	102556369	102573063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102556657_102557161_102557312_102559127_102559286_102563009_102563115_102564864_102566738_102567559_102567695_102570757_102570939_102571335
ENSMUSG00000051469.15_0	chr18	-	2927	1	ISM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	7318	864	6828	-864	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAAGATATCTTTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	24146549	24143622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_24143600_24146500
ENSMUSG00000051469.15_1	chr18	-	3130	4	FSM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	29	2573	29	1650	multi-exon	FALSE	canonical	3	144	junction_3	47.8957200593122	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAAGTAGCTTGGAATT	NA	False	NA	NA	False	AATAAA	-21	NA	24153838	24145331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153768
ENSMUSG00000051469.15_12	chr18	-	2734	3	ISM	ENSMUSG00000051469.15	ENSMUST00000153337.2	1513	4	2478	-1650	2478	1650	3prime_fragment	FALSE	canonical	3	225	junction_2	16.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAAGTAGCTTGGAATT	NA	False	NA	NA	False	AATAAA	-21	NA	24150899	24145331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_24147743_24150340_24150489_24150724
ENSMUSG00000051469.15_2	chr18	-	3182	4	FSM	ENSMUSG00000051469.15	ENSMUST00000153337.2	1513	4	-19	-1650	-19	1650	multi-exon	FALSE	canonical	3	66	junction_3	83.8212383587835	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAAGTAGCTTGGAATT	NA	False	NA	NA	False	AATAAA	-21	NA	24153396	24145331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153274
ENSMUSG00000051469.15_4	chr18	-	3553	4	NIC	ENSMUSG00000051469.15	novel	5732	4	NA	NA	-4	1650	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	102.009803450453	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAAGTAGCTTGGAATT	NA	False	NA	NA	False	AATAAA	-21	NA	24153381	24145331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_24147743_24150340_24150489_24150724_24151226_24152888
ENSMUSG00000051483.10_1	chr16	+	1022	3	FSM	ENSMUSG00000051483.10	ENSMUST00000039659.9	1237	3	28	187	-24	-26	multi-exon	FALSE	canonical	3	426	junction_1	12.5	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGAATTCTTTGAATGCA	NA	False	NA	-11	True	AATAAA	-1	NA	93404752	93407206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_93405143_93405676_93405785_93406682
ENSMUSG00000051483.10_3	chr16	+	1030	3	FSM	ENSMUSG00000051483.10	ENSMUST00000231762.2	593	3	-36	-401	16	-26	multi-exon	FALSE	canonical	1	5	junction_2	210.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGAATTCTTTGAATGCA	NA	False	NA	-11	True	AATAAA	-1	NA	93404740	93407206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_93405143_93405676_93405785_93406686
ENSMUSG00000051495.9_0	chr8	-	2714	2	FSM	ENSMUSG00000051495.9	ENSMUST00000054960.9	5080	2	4	2362	4	-2362	multi-exon	FALSE	canonical	3	202	junction_1	0	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATTGCCTTACTGTCTGT	NA	False	NA	-2	True	AATACA	-18	NA	127320721	127317396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_127318568_127319178
ENSMUSG00000051495.9_1	chr8	-	2904	1	ISM	ENSMUSG00000051495.9	ENSMUST00000054960.9	5080	2	2781	6	2781	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAATGTTTTCCAAGACC	NA	False	NA	-11	True	AATAAA	-16	NA	127317944	127315040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_127315000_127317900
ENSMUSG00000051499.8_0	chr6	-	2850	4	FSM	ENSMUSG00000051499.8	ENSMUST00000058844.6	3191	4	342	-1	-21	1	multi-exon	FALSE	canonical	3	13	junction_2	4.64279609239471	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATATGCGTTTGGGTTTGCT	6062	False	NA	-6	True	AATACA	-21	NA	47807459	47796198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_47798636_47801974_47802131_47803895_47804023_47807329
ENSMUSG00000051499.8_2	chr6	-	1149	1	ISM	ENSMUSG00000051499.8	ENSMUST00000058844.6	3191	4	10448	5	10085	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGATATGCGTTTGGG	9866	False	NA	-12	True	AATACA	-15	NA	47797353	47796204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_47796200_47797400
ENSMUSG00000051502.8_0	chr5	+	1029	1	FSM	ENSMUSG00000051502.8	ENSMUST00000052825.7	1037	1	7	1	7	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATGGCCCAGCCTGTGTT	1551	False	NA	6	True	NA	NA	NA	137292897	137293926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137292900_137293900
ENSMUSG00000051506.18_2	chr14	-	2115	13	ISM	ENSMUSG00000051506.18	ENSMUST00000130509.10	10158	62	198385	18	36656	-18	3prime_fragment	FALSE	canonical	2	4	junction_12	4.80378901377745	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGCTTGAGCGTTACC	NA	False	NA	-18	True	ATTAAA	-19	NA	32708638	32681521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_32681962_32682698_32682811_32686495_32686581_32688320_32688504_32689429_32689610_32692779_32692939_32693534_32693720_32695492_32695644_32696111_32696325_32697111_32697204_32699046_32699201_32707613_32707724_32708587
ENSMUSG00000051506.18_4	chr14	-	1051	6	ISM	ENSMUSG00000051506.18	ENSMUST00000130509.10	10158	62	214188	23	52459	-23	3prime_fragment	FALSE	canonical	3	12	junction_1	3.37045990927054	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGAAGGCTGCTTGAGCG	NA	False	NA	-23	True	ATTAAA	-14	NA	32692835	32681526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_32681962_32682698_32682811_32686495_32686581_32688320_32688504_32689429_32689610_32692779
ENSMUSG00000051506.18_5	chr14	-	1928	11	ISM	ENSMUSG00000051506.18	ENSMUST00000130509.10	10158	62	207844	23	46115	-23	3prime_fragment	FALSE	canonical	3	5	junction_6	4.28485705712571	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGAAGGCTGCTTGAGCG	8590	False	NA	-23	True	ATTAAA	-14	NA	32699179	32681526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_32681962_32682698_32682811_32686495_32686581_32688320_32688504_32689429_32689610_32692779_32692939_32693534_32693720_32695492_32695644_32696111_32696325_32697111_32697204_32699046
ENSMUSG00000051510.14_0	chr11	-	4873	3	FSM	ENSMUSG00000051510.14	ENSMUST00000058162.14	4923	3	43	7	-1	-7	multi-exon	FALSE	canonical	3	302	junction_2	28	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGATCTGGTGGTATTT	7401	False	NA	-8	True	AATAAA	-9	NA	120524383	120515949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120520563_120520643_120520708_120524187
ENSMUSG00000051510.14_1	chr11	-	3305	1	ISM	ENSMUSG00000051510.14	ENSMUST00000058162.14	4923	3	5172	7	1720	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGATCTGGTGGTATTT	NA	False	NA	-8	True	AATAAA	-9	NA	120519254	120515949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120515900_120519300
ENSMUSG00000051510.14_2	chr11	-	7072	3	FSM	ENSMUSG00000025138.15_ENSMUSG00000051510.14	ENSMUST00000106182.8	1104	3	-2085	-3883	674	-7	multi-exon	FALSE	canonical	3	29	junction_2	164.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGATCTGGTGGTATTT	8076	False	NA	-8	True	AATAAA	-9	NA	120523708	120515949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120520563_120520643_120520708_120521313
ENSMUSG00000051510.14_7	chr11	-	4912	2	ISM	ENSMUSG00000051510.14	ENSMUST00000058162.14	4923	3	3484	7	32	-7	3prime_fragment	FALSE	canonical	3	358	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGATCTGGTGGTATTT	9645	False	NA	-8	True	AATAAA	-9	NA	120520942	120515949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120520563_120520643
ENSMUSG00000051515.12_0	chr7	+	1772	1	FSM	ENSMUSG00000051515.12	ENSMUST00000051179.12	2002	1	78	152	78	-152	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAATGGAACAGAGGTA	NA	False	NA	NA	False	ATTAAA	-11	NA	92729150	92730922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_92729200_92730900
ENSMUSG00000051517.15_0	chr4	-	2115	7	NIC	ENSMUSG00000051517.15	novel	1508	8	NA	NA	19	0	intron_retention	FALSE	canonical	3	106	junction_4	12.5088857306405	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCTTCCTGTCTAAAT	5	True	NA	-7	True	AATAAA	-14	NA	43499642	43496145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_43496721_43496820_43496910_43497086_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
ENSMUSG00000051517.15_1	chr4	-	1606	9	FSM	ENSMUSG00000051517.15	ENSMUST00000054538.13	1659	9	49	4	15	0	multi-exon	FALSE	canonical	3	105	junction_3	13.833270582187	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCTTCCTGTCTAAAT	1	True	NA	-7	True	AATAAA	-14	NA	43499646	43496145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43496721_43496820_43496910_43497086_43497317_43497581_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
ENSMUSG00000051517.15_5	chr4	-	1871	8	FSM	ENSMUSG00000051517.15	ENSMUST00000125834.8	1508	8	15	-378	15	0	multi-exon	FALSE	canonical	3	106	junction_5	13.3248272186983	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCTTCCTGTCTAAAT	1	True	NA	-7	True	AATAAA	-14	NA	43499646	43496145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_43496721_43496820_43496910_43497086_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
ENSMUSG00000051517.15_7	chr4	-	2295	6	NIC	ENSMUSG00000051517.15	novel	1508	8	NA	NA	16	0	intron_retention	FALSE	canonical	3	106	junction_3	13.6733317081098	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCTTCCTGTCTAAAT	2	True	NA	-7	True	AATAAA	-14	NA	43499645	43496145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_43496721_43496820_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
ENSMUSG00000051518.9_1	chr15	-	810	4	FSM	ENSMUSG00000051518.9	ENSMUST00000052499.9	838	4	21	7	-10	-7	multi-exon	FALSE	canonical	3	697	junction_3	66.5181679443043	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGGATTCAAGTGTGT	NA	False	NA	-12	True	AATAAA	-18	NA	80148495	80144822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_80145332_80145497_80145596_80148183_80148319_80148427
ENSMUSG00000051518.9_3	chr15	-	969	3	NIC	ENSMUSG00000051518.9	novel	838	4	NA	NA	-3	-7	intron_retention	FALSE	canonical	3	697	junction_2	77.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGGATTCAAGTGTGT	NA	False	NA	-12	True	AATAAA	-18	NA	80148488	80144822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_80145596_80148183_80148319_80148427
ENSMUSG00000051527.12_3	chr7	+	3709	3	ISM	ENSMUSG00000051527.12	ENSMUST00000198068.3	4420	5	4613	255	4613	-255	3prime_fragment	FALSE	canonical	1	1	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTTTGTGATTCATC	2996	False	NA	NA	False	ATTAAA	-14	NA	6955213	6967569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_6955297_6962961_6963149_6964130
ENSMUSG00000051550.11_0	chr7	-	562	1	FSM	ENSMUSG00000051550.11	ENSMUST00000162731.2	2489	1	1925	2	1925	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCGAGTGAGGCTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	4996414	4995852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4995900_4996400
ENSMUSG00000051557.16_17	chr4	-	2159	6	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	14	-5	intron_retention	FALSE	canonical	3	293	junction_5	33.0357382239296	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACAAAAAGGTCTGTTTA	9149	False	NA	NA	False	AATAAA	-9	NA	155976169	155973323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_155973626_155973890_155974054_155974125_155975127_155975209_155975360_155975508_155975697_155975814
ENSMUSG00000051557.16_2	chr4	-	1952	7	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	8	-3	intron_retention	FALSE	canonical	3	293	junction_5	37.4985184892535	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAAAGGTCTGTTTATT	9143	False	NA	NA	False	AATAAA	-11	NA	155976175	155973321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_155973626_155973890_155974054_155974125_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000051557.16_26	chr4	-	1392	7	ISM	ENSMUSG00000051557.16	ENSMUST00000097737.5	1243	8	63	3	8	-3	intron_retention	FALSE	canonical	3	268	junction_3	44.2254326026201	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAAAGGTCTGTTTATT	9143	False	NA	NA	False	AATAAA	-11	NA	155976175	155973321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814
ENSMUSG00000051557.16_31	chr4	-	2024	6	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	8	-3	intron_retention	FALSE	canonical	3	293	junction_4	40.5679676592259	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAAAGGTCTGTTTATT	9143	False	NA	NA	False	AATAAA	-11	NA	155976175	155973321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_155973626_155973890_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000051557.16_7	chr4	-	1206	8	FSM	ENSMUSG00000051557.16	ENSMUST00000097737.5	1243	8	34	3	8	-3	multi-exon	FALSE	canonical	3	268	junction_3	43.9103911276089	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAAAGGTCTGTTTATT	9114	False	NA	NA	False	AATAAA	-11	NA	155976204	155973321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000051579.11_0	chrX	-	1105	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	140	5	-1	-5	multi-exon	FALSE	canonical	3	703	junction_2	29	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACACACTTGGTTAAGACT	NA	False	NA	NA	False	NA	NA	NA	135072951	135070834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_135071799_135072384_135072455_135072880
ENSMUSG00000051579.11_6	chrX	-	591	1	ISM	ENSMUSG00000051579.11	ENSMUST00000163584.8	2358	4	1577	1100	1527	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACTTGGTTAAGACTTG	NA	False	NA	NA	False	NA	NA	NA	135071423	135070832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_135070800_135071400
ENSMUSG00000051586.18_1	chr6	-	6450	16	NIC	ENSMUSG00000051586.18	novel	6670	16	NA	NA	118	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_15	8.89194391945128	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAGAAATGAAAAATGTAT	NA	False	NA	NA	False	AATAAA	-27	NA	120979995	120908682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_120911814_120911893_120911968_120912134_120912235_120928261_120928356_120929335_120929447_120930594_120930646_120934659_120934755_120935201_120937000_120937952_120938036_120938543_120938691_120939715_120939827_120950363_120950609_120959492_120959689_120978568_120978657_120979747_120979837_120979958
ENSMUSG00000051586.18_11	chr6	-	4128	8	FSM	ENSMUSG00000051586.18	ENSMUST00000151602.4	992	8	-77	-3059	-77	0	multi-exon	FALSE	canonical	3	23	junction_5	3.15581743348207	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAGAAATGAAAAATGTAT	NA	False	NA	NA	False	AATAAA	-27	NA	120935673	120908682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_120911814_120911893_120911968_120912134_120912235_120928261_120928356_120929335_120929447_120930594_120930646_120934659_120934755_120935201
ENSMUSG00000051586.18_28	chr6	-	3460	21	NIC	ENSMUSG00000051586.18	novel	9204	32	NA	NA	-54	-14853	combination_of_known_junctions	FALSE	canonical	3	36	junction_4	16.1133485036475	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGGTCTTTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	121087108	120950156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_120950609_120959492_120959689_120978568_120978657_120979747_120979837_120985955_120986143_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926_121004075_121006607_121006705_121007957_121008085_121010658_121010775_121010990_121011249_121013433_121013535_121014404_121014561_121014970_121015073_121015447_121015565_121017342_121017551_121018956_121019296_121086976
ENSMUSG00000051586.18_30	chr6	-	3004	1	Genic_Genomic	ENSMUSG00000051586.18	novel	NA	NA	NA	NA	2834	1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGTTTCTGAGTTTTTCT	NA	False	NA	NA	False	AATAAA	-14	NA	120977279	120974275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_120974300_120977300
ENSMUSG00000051586.18_34	chr6	-	7096	19	NIC	ENSMUSG00000051586.18	novel	9204	32	NA	NA	-54	-8	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	14.3922132581871	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATCTTCAGGTTTCTG	NA	False	NA	NA	False	AATAAA	-5	NA	121087108	120974284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_120978657_120979747_120979837_120985955_120986143_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926_121004075_121006607_121006705_121007957_121008085_121010658_121010775_121010990_121011249_121013433_121013535_121014404_121014561_121014970_121015073_121015447_121015565_121017342_121017551_121018956_121019296_121086976
ENSMUSG00000051586.18_37	chr6	-	2824	18	NIC	ENSMUSG00000051586.18	novel	2875	18	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	13.1507101127881	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTATTTGTCCTTTAGT	NA	False	NA	-6	True	AATAAA	-18	NA	121087108	120984201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_120984391_120985955_120986143_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926_121004075_121006607_121006705_121007957_121008085_121010658_121010775_121010990_121011249_121013433_121013535_121014404_121014561_121014970_121015073_121015447_121015565_121017342_121017551_121018956_121019296_121086976
ENSMUSG00000051586.18_4	chr6	-	4529	7	ISM	ENSMUSG00000051586.18	ENSMUST00000098457.9	6670	16	43987	16	-530	-1	3prime_fragment	FALSE	canonical	3	8	junction_5	7.78352961922374	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAGAAATGAAAAATGTA	NA	False	NA	NA	False	AATAAA	-26	NA	120936126	120908683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_120911814_120911893_120911968_120912134_120912235_120928261_120928356_120929335_120929447_120934659_120934755_120935201
ENSMUSG00000051586.18_5	chr6	-	2446	1	ISM	ENSMUSG00000051586.18	ENSMUST00000098457.9	6670	16	68985	15	1368	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAGAAATGAAAAATGTAT	5712	False	NA	NA	False	AATAAA	-27	NA	120911128	120908682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_120908700_120911100
ENSMUSG00000051586.18_52	chr6	-	2709	1	NIC	ENSMUSG00000051586.18	novel	1382	11	NA	NA	2891	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	6797	False	NA	NA	False	TTTAAA	-12	NA	120996319	120993610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_120993600_120996300
ENSMUSG00000051596.16_0	chr5	+	2966	6	FSM	ENSMUSG00000051596.16	ENSMUST00000114099.6	3141	6	156	19	156	-19	multi-exon	FALSE	canonical	1	3	junction_5	1.93907194296653	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAATAATAAAGCTTTCA	NA	False	NA	NA	False	NA	NA	NA	38434903	38461532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_38435169_38445240_38445378_38451832_38451892_38455200_38455332_38456966_38457875_38460066
ENSMUSG00000051615.15_0	chr14	+	4241	2	FSM	ENSMUSG00000051615.15	ENSMUST00000062117.14	4191	2	-58	8	-58	-8	multi-exon	FALSE	canonical	3	102	junction_1	0	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAAATCTGGCTTGTGT	NA	False	NA	NA	False	AATAAA	-8	NA	120715797	120744598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_120716453_120741012
ENSMUSG00000051615.15_5	chr14	+	2477	1	ISM	ENSMUSG00000051615.15	ENSMUST00000062117.14	4191	2	26266	8	26266	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAAATCTGGCTTGTGT	NA	False	NA	NA	False	AATAAA	-8	NA	120742121	120744598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_120742100_120744600
ENSMUSG00000051639.4_0	chr17	-	912	1	FSM	ENSMUSG00000051639.4	ENSMUST00000061073.2	957	1	159	-114	159	114	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	6172280	6171368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_6171400_6172300
ENSMUSG00000051648.14_0	chr8	-	2341	12	ISM	ENSMUSG00000051648.14	ENSMUST00000167294.8	2979	16	19481	13	-8604	-13	3prime_fragment	FALSE	canonical	1	1	junction_3	0.616575453011388	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGTAAATAACAAGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	106120653	106109451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106109702_106111362_106111465_106111654_106111810_106111961_106112154_106113381_106114010_106114397_106114513_106114822_106114907_106115096_106115240_106115675_106115780_106116911_106117073_106118504_106118716_106120457
ENSMUSG00000051648.14_1	chr8	-	3023	17	FSM	ENSMUSG00000051648.14	ENSMUST00000063071.13	3048	17	0	25	0	-25	multi-exon	FALSE	canonical	0	0	junction_11	1.11628569371823	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAATAAAAAAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	106140134	106109463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106109702_106111362_106111465_106111654_106111810_106111961_106112154_106113381_106114010_106114397_106114513_106114822_106114907_106115096_106115240_106115675_106115780_106116911_106117073_106118504_106118716_106120194_106120264_106120457_106120590_106121902_106122095_106122961_106123113_106134959_106135257_106140085
ENSMUSG00000051648.14_2	chr8	-	2974	16	FSM	ENSMUSG00000051648.14	ENSMUST00000167294.8	2979	16	-16	21	-16	-21	multi-exon	FALSE	canonical	0	0	junction_12	1.01105005920687	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAGTAAATAACA	NA	False	NA	NA	False	NA	NA	NA	106140150	106109459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106109702_106111362_106111465_106111654_106111810_106111961_106112154_106113381_106114010_106114397_106114513_106114822_106114907_106115096_106115240_106115675_106115780_106116911_106117073_106118504_106118716_106120457_106120590_106121902_106122095_106122961_106123113_106134959_106135257_106140085
ENSMUSG00000051650.12_2	chr11	-	2656	2	FSM	ENSMUSG00000051650.12	ENSMUST00000062844.11	3057	2	396	5	-160	-5	multi-exon	FALSE	canonical	3	288	junction_1	0	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCATCACGTATAATAAGT	4365	False	NA	-33	True	AATAAA	-16	NA	22809705	22784751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_22787196_22809493
ENSMUSG00000051650.12_3	chr11	-	2698	2	FSM	ENSMUSG00000051650.12	ENSMUST00000055549.4	2602	2	17	-113	17	-5	multi-exon	FALSE	canonical	3	85	junction_1	0	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCATCACGTATAATAAGT	3599	False	NA	-33	True	AATAAA	-16	NA	22810471	22784751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_22787196_22810217
ENSMUSG00000051650.12_4	chr11	-	2083	1	ISM	ENSMUSG00000098650.2	ENSMUST00000160826.2	2746	3	145256	8	145256	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCATCACGTATAATAAGT	NA	False	NA	-33	True	AATAAA	-16	NA	22786834	22784751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_22784800_22786800
ENSMUSG00000051652.5_0	chr10	-	2027	2	FSM	ENSMUSG00000051652.5	ENSMUST00000057608.5	4296	2	66	2203	66	-2203	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGCATAGTGTGTGTG	4376	False	NA	NA	False	NA	NA	NA	77738304	77735611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_77737567_77738232
ENSMUSG00000051671.8_1	chr8	+	691	2	FSM	ENSMUSG00000051671.8	ENSMUST00000059093.7	747	2	13	43	0	-43	multi-exon	FALSE	canonical	3	239	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAATATAGTTGCACATAA	NA	False	NA	-36	True	NA	NA	NA	127149266	127152129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_127149570_127151741
ENSMUSG00000051674.16_1	chr5	+	4066	11	FSM	ENSMUSG00000051674.16	ENSMUST00000063882.12	4116	11	46	4	12	-4	multi-exon	FALSE	canonical	3	110	junction_1	17.7721692542019	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGATTTGTGGGGTCT	NA	False	NA	11	True	AATAAA	-22	NA	73648421	73718129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_73648535_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
ENSMUSG00000051674.16_17	chr5	+	4416	11	NIC	ENSMUSG00000051674.16	novel	1243	8	NA	NA	-42	-4	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	44.337907032245	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGATTTGTGGGGTCT	NA	False	NA	11	True	AATAAA	-22	NA	73649956	73718129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_73650420_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
ENSMUSG00000051674.16_20	chr5	+	4053	11	NIC	ENSMUSG00000051674.16	novel	1243	8	NA	NA	-8199	-4	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	34.4034881952397	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGATTTGTGGGGTCT	8143	False	NA	11	True	AATAAA	-22	NA	73660011	73718129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_73660112_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
ENSMUSG00000051674.16_36	chr5	+	2262	1	ISM	ENSMUSG00000051674.16	ENSMUST00000087181.12	4117	12	77525	8	47657	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGATTTGTGGGGTCT	NA	False	NA	11	True	AATAAA	-22	NA	73715867	73718129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_73715900_73718100
ENSMUSG00000051675.14_0	chr4	+	3156	2	FSM	ENSMUSG00000051675.14	ENSMUST00000050850.14	3194	2	34	4	34	-4	multi-exon	FALSE	canonical	3	75	junction_1	0	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTGATGGTCATGTCTT	NA	False	NA	16	True	AATAAA	-17	NA	65523256	65534471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_65523307_65531365
ENSMUSG00000051675.14_1	chr4	+	3153	2	FSM	ENSMUSG00000051675.14	ENSMUST00000107366.2	3191	2	34	4	34	-4	multi-exon	FALSE	canonical	3	41	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTGATGGTCATGTCTT	NA	False	NA	16	True	AATAAA	-17	NA	65523256	65534471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_65523307_65531368
ENSMUSG00000051675.14_6	chr4	+	3086	1	ISM	ENSMUSG00000051675.14	ENSMUST00000050850.14	3194	2	8163	4	7900	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTGATGGTCATGTCTT	NA	False	NA	16	True	AATAAA	-17	NA	65531385	65534471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_65531400_65534500
ENSMUSG00000051695.7_0	chr6	-	1674	1	FSM	ENSMUSG00000051695.7	ENSMUST00000053015.7	1830	1	149	7	149	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4259	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGCTTCGTATTTGAA	NA	False	NA	29	True	ATTAAA	-15	NA	86503154	86501480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_86501500_86503200
ENSMUSG00000051703.15_0	chr1	+	2071	5	FSM	ENSMUSG00000051703.15	ENSMUST00000113575.9	2185	5	108	6	60	-6	multi-exon	FALSE	canonical	0	0	junction_1	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGATGTGGTCTCTGCCA	5561	False	NA	12	True	TATAAA	-7	NA	75456283	75462331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_75456530_75456836_75457042_75459212_75459789_75461018_75461222_75461490
ENSMUSG00000051705.14_0	chr9	-	1436	2	FSM	ENSMUSG00000051705.14	ENSMUST00000051039.5	3682	2	24	2222	2	-11	multi-exon	FALSE	canonical	3	38	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAACCACCTGCGGG	6442	False	NA	-33	True	AATAAA	-4	NA	59657908	59643763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_59645152_59657860
ENSMUSG00000051705.14_1	chr9	-	1817	1	ISM	ENSMUSG00000051705.14	ENSMUST00000051039.5	3682	2	13073	1501	13046	710	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59644859	59643042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_59643000_59644900
ENSMUSG00000051705.14_2	chr9	-	3777	3	FSM	ENSMUSG00000051705.14	ENSMUST00000177963.8	3792	3	11	4	0	-4	multi-exon	FALSE	canonical	2	5	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGTGTGGTCTCTGTCTC	6429	False	NA	-8	True	AATAAA	-14	NA	59657921	59641545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_59645152_59657544_59657655_59657860
ENSMUSG00000051705.14_3	chr9	-	3745	3	FSM	ENSMUSG00000051705.14	ENSMUST00000163586.9	3570	3	13	-188	2	-6	multi-exon	FALSE	canonical	3	14	junction_2	2.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATTGTGTGGTCTCTGTC	6442	False	NA	-10	True	AATAAA	-12	NA	59657908	59641547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_59645152_59647222_59647316_59657860
ENSMUSG00000051705.14_4	chr9	-	3753	3	FSM	ENSMUSG00000051705.14	ENSMUST00000213257.2	764	3	8	-2997	8	-6	multi-exon	FALSE	canonical	1	1	junction_2	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATTGTGTGGTCTCTGTC	6453	False	NA	-10	True	AATAAA	-12	NA	59657897	59641547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_59645152_59647222_59647335_59657860
ENSMUSG00000051705.14_5	chr9	-	1622	4	FSM	ENSMUSG00000051705.14	ENSMUST00000217093.2	1663	4	24	17	8	-17	multi-exon	FALSE	canonical	2	3	junction_2	6.59966329107444	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAACAAAACCACC	6453	False	NA	-39	True	AGTAAA	-2	NA	59657897	59643769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_59645152_59647222_59647316_59657544_59657655_59657860
ENSMUSG00000051721.7_10	chr12	+	2893	3	ISM	ENSMUSG00000051721.7	ENSMUST00000223551.2	4317	4	7307	792	464	-792	3prime_fragment	FALSE	canonical	3	7	junction_2	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	4900609	4909251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_4901943_4905277_4905393_4907806
ENSMUSG00000051721.7_11	chr12	+	201	1	ISM	ENSMUSG00000051721.7	ENSMUST00000223551.2	4317	4	15774	766	8931	-766	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGCTGAAAGTTTTACAA	1259	False	NA	NA	False	NA	NA	NA	4909076	4909277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_4909100_4909300
ENSMUSG00000051721.7_3	chr12	+	2966	4	FSM	ENSMUSG00000051721.7	ENSMUST00000223551.2	4317	4	69	1282	-22	-1282	multi-exon	FALSE	canonical	3	7	junction_3	4.49691252107735	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTCCTGGGAGTGCCAAT	NA	False	NA	NA	False	AATAAA	-14	NA	4893371	4908761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4893452_4900126_4901943_4905277_4905393_4907806
ENSMUSG00000051721.7_4	chr12	+	2145	4	FSM	ENSMUSG00000051721.7	ENSMUST00000220215.2	2202	4	55	2	11	-2	multi-exon	FALSE	canonical	2	4	junction_3	5.90668171555645	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGGATTTATTCA	NA	False	NA	NA	False	NA	NA	NA	4893357	4906965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4893452_4900126_4901943_4905277_4905393_4906845
ENSMUSG00000051721.7_5	chr12	+	576	2	FSM	ENSMUSG00000051721.7	ENSMUST00000219069.2	605	2	30	-1	11	1	multi-exon	FALSE	canonical	3	75	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACATGGTGGTGTGTGCCT	NA	False	NA	NA	False	AATAAA	-16	NA	4893357	4899344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4893452_4898862
ENSMUSG00000051721.7_8	chr12	+	2687	3	ISM	ENSMUSG00000051721.7	ENSMUST00000220215.2	2202	4	75	893	-16	-851	5prime_fragment	FALSE	canonical	3	16	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATTAATTAACTTATTTA	NA	False	NA	NA	False	AATATA	-31	NA	4893377	4906074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_4893452_4900126_4901943_4905277
ENSMUSG00000051726.7_0	chr12	-	4444	1	FSM	ENSMUSG00000051726.7	ENSMUST00000170580.3	4789	1	339	6	339	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAACCTGCCTGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	17226550	17222106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_17222100_17226600
ENSMUSG00000051730.16_0	chr2	-	934	7	FSM	ENSMUSG00000051730.16	ENSMUST00000060447.13	968	7	18	16	0	0	multi-exon	FALSE	canonical	3	432	junction_3	75.5058864519111	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACTTGTCTCTAGCAC	6824	False	NA	-21	True	AATAAA	-18	NA	69715941	69701557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69709445_69709529_69711110_69711293_69711640_69711756_69715592
ENSMUSG00000051730.16_1	chr2	-	844	6	FSM	ENSMUSG00000051730.16	ENSMUST00000142127.8	851	6	3	4	3	0	multi-exon	FALSE	canonical	3	48	junction_3	209.013492387453	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAACTACTTGTCTCTA	6827	False	NA	-25	True	AATAAA	-14	NA	69715938	69701561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69711110_69711293_69711640_69711756_69715592
ENSMUSG00000051730.16_18	chr2	-	919	4	FSM	ENSMUSG00000051730.16	ENSMUST00000135487.2	2090	4	5	1166	-2	-1166	multi-exon	FALSE	canonical	3	529	junction_1	42.2926313518876	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCTGATTGATTTTCAT	6822	False	NA	NA	False	NA	NA	NA	69715943	69709257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_69709529_69711110_69711293_69711640_69711756_69715592
ENSMUSG00000051730.16_21	chr2	-	892	3	ISM	ENSMUSG00000051730.16	ENSMUST00000135487.2	2090	4	5	2775	-2	-2775	5prime_fragment	FALSE	canonical	3	609	junction_2	8.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCTTTAGAACCTGGATT	6822	False	NA	NA	False	TATAAA	-17	NA	69715943	69710866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_69711293_69711640_69711756_69715592
ENSMUSG00000051735.8_2	chr7	+	2067	5	ISM	ENSMUSG00000051735.8	ENSMUST00000209035.2	2898	12	7045	1	-924	-1	3prime_fragment	FALSE	canonical	3	40	junction_1	3.11247489949718	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGACGAGCAATGGAGGTG	NA	False	NA	2	True	AATAAA	-12	NA	28495438	28498378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28495772_28496077_28496372_28496534_28496667_28496984_28497149_28497234
ENSMUSG00000051735.8_5	chr7	+	1511	4	ISM	ENSMUSG00000051735.8	ENSMUST00000209035.2	2898	12	7863	45	-106	-1	3prime_fragment	FALSE	canonical	3	41	junction_1	2.86744175568088	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAGGTGGTAATAATAAT	NA	False	NA	7	True	NA	NA	NA	28496256	28498334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28496372_28496534_28496667_28496984_28497149_28497234
ENSMUSG00000051735.8_6	chr7	+	537	1	ISM	ENSMUSG00000051735.8	ENSMUST00000209035.2	2898	12	9399	50	470	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACACCAAGGTGGTAATA	NA	False	NA	2	True	NA	NA	NA	28497792	28498329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_28497800_28498300
ENSMUSG00000051736.9_1	chr10	-	677	5	FSM	ENSMUSG00000051736.9	ENSMUST00000124941.8	721	5	40	4	-3	1	multi-exon	FALSE	canonical	2	3	junction_3	11.3880419739304	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCATTGGGTGATGACAAT	NA	False	NA	-21	True	AATAAA	-10	NA	39009856	38994818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_38995031_38996253_38996393_38998172_38998329_39008242_39008375_39009818
ENSMUSG00000051747.16_1	chr2	-	4341	6	ISM	ENSMUSG00000051747.16	ENSMUST00000111846.9	100404	312	270046	-1047	116406	0	intron_retention	FALSE	canonical	1	3	junction_3	1.83303027798234	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTGTGGTTGGTTGTT	NA	False	NA	0	True	AATAAA	-19	NA	76540480	76534327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76535674_76536013_76536317_76536783_76536938_76537040_76537733_76538502_76538660_76538791
ENSMUSG00000051747.16_2	chr2	-	8763	7	ISM	ENSMUSG00000051747.16	ENSMUST00000011934.13	81999	191	267780	5	111867	-1	3prime_fragment	FALSE	canonical	1	1	junction_6	2.19215773966098	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTGTGGTTGGTTGT	NA	False	NA	-1	True	AATAAA	-18	NA	76545019	76534328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76535674_76536013_76536317_76536783_76536938_76537040_76537733_76538502_76538660_76538791_76544557_76544672
ENSMUSG00000051768.10_0	chr7	+	2103	17	FSM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	48	4	0	0	multi-exon	FALSE	canonical	3	337	junction_4	31.1527862919194	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAACGGTTTCTCTCTTA	NA	False	NA	3	True	AATAAA	-15	NA	24246622	24272859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
ENSMUSG00000051786.16_13	chr15	-	3160	10	ISM	ENSMUSG00000051786.16	ENSMUST00000109353.9	7635	25	19779	745	-705	-4	3prime_fragment	FALSE	canonical	3	53	junction_9	11.9267310517277	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGCCTCTGGGTTGTTA	NA	False	NA	-6	True	ACTAAA	-13	NA	88987511	88983304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_88984707_88984787_88984988_88985068_88985283_88985355_88985489_88985564_88985760_88985977_88986120_88986203_88986373_88986456_88986611_88986747_88986807_88987019
ENSMUSG00000051786.16_2	chr15	-	6945	25	FSM	ENSMUSG00000051786.16	ENSMUST00000109353.9	7635	25	-57	747	-32	-6	multi-exon	FALSE	canonical	3	40	junction_22	13.0596920161065	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCAGCCTCTGGGTTGT	NA	False	NA	-8	True	ACTAAA	-11	NA	89007347	88983306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_88984707_88984787_88984988_88985068_88985283_88985355_88985489_88985564_88985760_88985977_88986120_88986203_88986373_88986456_88986611_88986747_88986807_88987019_88988494_88988621_88988694_88988936_88989076_88990274_88990391_88990471_88990561_88990645_88990728_88991615_88991766_88992153_88992294_88992763_88992856_88993149_88993260_88993423_88993500_88994248_88994371_88995318_88995493_89000247_89000459_89004712_89004877_89006279
ENSMUSG00000051786.16_22	chr15	-	3055	9	ISM	ENSMUSG00000051786.16	ENSMUST00000109353.9	7635	25	20097	745	-387	-4	intron_retention	TRUE	canonical	3	55	junction_7	11.0453610171873	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGCCTCTGGGTTGTTA	NA	False	NA	-6	True	ACTAAA	-13	NA	88987193	88983304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_88984707_88984787_88984988_88985068_88985283_88985355_88985489_88985564_88985760_88985977_88986120_88986203_88986373_88986456_88986611_88986747
ENSMUSG00000051786.16_4	chr15	-	735	1	ISM	ENSMUSG00000051786.16	ENSMUST00000109353.9	7635	25	23251	745	1262	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGCCTCTGGGTTGTTA	NA	False	NA	-6	True	ACTAAA	-13	NA	88984039	88983304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_88983300_88984000
ENSMUSG00000051786.16_40	chr15	-	6835	24	NIC	ENSMUSG00000051786.16	novel	7635	25	NA	NA	2	-6	intron_retention	TRUE	canonical	1	2	junction_19	17.0658681681508	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCAGCCTCTGGGTTGT	NA	False	NA	-8	True	ACTAAA	-11	NA	89007313	88983306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_88984707_88984787_88984988_88985068_88985283_88985355_88985489_88985564_88985760_88985977_88986120_88986203_88986373_88986456_88986611_88986747_88986807_88987019_88988494_88988621_88988694_88988936_88989076_88990274_88990391_88990471_88990561_88990645_88990728_88991615_88991766_88992153_88992294_88992763_88992856_88993149_88993260_88994248_88994371_88995318_88995493_89000247_89000459_89004712_89004877_89006279
ENSMUSG00000051786.16_54	chr15	-	2184	3	ISM	ENSMUSG00000051786.16	ENSMUST00000041656.14	5357	25	-274	14910	-48	3119	5prime_fragment	FALSE	canonical	3	50	junction_1	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGCCTTTGTATAATA	NA	False	NA	NA	False	NA	NA	NA	89007363	88999522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89000459_89004712_89004877_89006279
ENSMUSG00000051790.16_1	chr11	-	3646	3	ISM	ENSMUSG00000051790.16	ENSMUST00000056484.10	5003	7	7042	1	752	-1	3prime_fragment	FALSE	canonical	3	12	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGTTGTCTCCTGTCG	NA	False	NA	-3	True	TATAAA	-13	NA	69718633	69713948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69716906_69717569_69718167_69718541
ENSMUSG00000051790.16_2	chr11	-	4198	6	NIC	ENSMUSG00000051790.16	novel	5003	7	NA	NA	163	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	5.6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGTTGTCTCCTGTCG	9991	False	NA	-3	True	TATAAA	-13	NA	69724922	69713948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69716906_69717569_69718167_69718541_69718735_69718843_69719030_69719190_69719341_69724807
ENSMUSG00000051790.16_3	chr11	-	3250	2	ISM	ENSMUSG00000051790.16	ENSMUST00000056484.10	5003	7	7813	1	1523	-1	3prime_fragment	FALSE	canonical	3	12	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGTTGTCTCCTGTCG	NA	False	NA	-3	True	TATAAA	-13	NA	69717862	69713948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69716906_69717569
ENSMUSG00000051790.16_4	chr11	-	4442	7	FSM	ENSMUSG00000051790.16	ENSMUST00000056484.10	5003	7	560	1	-30	-1	multi-exon	FALSE	canonical	3	12	junction_1	3.14907393794853	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGTTGTCTCCTGTCG	10017	False	NA	-3	True	TATAAA	-13	NA	69725115	69713948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69716906_69717569_69718167_69718541_69718735_69718843_69719030_69719190_69719341_69721388_69721440_69724807
ENSMUSG00000051790.16_8	chr11	-	5082	6	NIC	ENSMUSG00000051790.16	novel	5003	7	NA	NA	-7	-2	intron_retention	FALSE	canonical	3	14	junction_1	2.65329983228432	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTGTGTTGTCTCCTGTC	9994	False	NA	-4	True	TATAAA	-12	NA	69725092	69713949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_69718167_69718541_69718735_69718843_69719030_69719190_69719341_69721388_69721440_69724807
ENSMUSG00000051790.16_9	chr11	-	1681	1	ISM	ENSMUSG00000051790.16	ENSMUST00000056484.10	5003	7	10046	1	3756	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGTTGTCTCCTGTCG	NA	False	NA	-3	True	TATAAA	-13	NA	69715629	69713948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_69713900_69715600
ENSMUSG00000051811.15_0	chr7	-	998	3	NIC	ENSMUSG00000051811.15	novel	435	4	NA	NA	-3	0	intron_retention	FALSE	canonical	0	0	junction_1	401.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTTTTCTCG	NA	False	NA	-11	True	AATAAA	-15	NA	4756025	4754792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_4754975_4755106_4755849_4755951
ENSMUSG00000051811.15_10	chr7	-	1148	2	FSM	ENSMUSG00000051811.15	ENSMUST00000182272.2	519	2	-498	-131	-3	0	multi-exon	FALSE	canonical	3	648	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTTTTCTCG	NA	False	NA	-11	True	AATAAA	-15	NA	4756025	4754792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4754975_4755059
ENSMUSG00000051811.15_11	chr7	-	586	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182111.8	585	3	-3	2	-3	0	multi-exon	FALSE	canonical	3	648	junction_1	77.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTTTTCTCG	NA	False	NA	-11	True	AATAAA	-15	NA	4756025	4754792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4754975_4755059_4755161_4755722
ENSMUSG00000051811.15_2	chr7	-	1230	1	NIC	ENSMUSG00000051811.15	novel	585	3	NA	NA	0	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTTTTCTCG	NA	False	NA	-11	True	AATAAA	-15	NA	4756022	4754792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_4754800_4756000
ENSMUSG00000051811.15_3	chr7	-	480	4	FSM	ENSMUSG00000051811.15	ENSMUST00000063324.14	553	4	71	2	0	0	multi-exon	FALSE	canonical	3	648	junction_1	73.0677007226099	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTTTTCTCG	NA	False	NA	-11	True	AATAAA	-15	NA	4756022	4754792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4754975_4755059_4755161_4755722_4755849_4755951
ENSMUSG00000051811.15_4	chr7	-	436	4	FSM	ENSMUSG00000051811.15	ENSMUST00000184143.8	435	4	-3	2	-3	0	multi-exon	FALSE	canonical	0	0	junction_1	378.537830195198	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTTTTCTCG	NA	False	NA	-11	True	AATAAA	-15	NA	4756025	4754792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4754975_4755106_4755161_4755722_4755849_4755951
ENSMUSG00000051811.15_5	chr7	-	1130	2	NIC	ENSMUSG00000051811.15	novel	423	4	NA	NA	-3	0	intron_retention	FALSE	canonical	3	803	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTTTTCTCG	NA	False	NA	-11	True	AATAAA	-15	NA	4756025	4754792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_4755849_4755951
ENSMUSG00000051817.9_0	chr2	-	2957	1	FSM	ENSMUSG00000051817.9	ENSMUST00000182625.2	4453	1	204	1292	187	-1289	mono-exon	FALSE	NA	NA	NA	NA	NA	419	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGCCCTGTGGTTCTGC	NA	False	NA	-7	True	AATAAA	-15	NA	152239779	152236822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_152236800_152239800
ENSMUSG00000051827.12_0	chrX	+	793	4	FSM	ENSMUSG00000051827.12	ENSMUST00000063340.12	795	4	4	-2	4	2	multi-exon	FALSE	canonical	3	47	junction_3	56.8174464598878	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACATTTGTTTTGTGCTT	NA	False	NA	NA	False	AATAAA	-14	NA	36508632	36513341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36508740_36508901_36509314_36510828_36510875_36513113
ENSMUSG00000051827.12_2	chrX	+	957	3	NIC	ENSMUSG00000051827.12	novel	795	4	NA	NA	2	2	intron_retention	FALSE	canonical	3	47	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACATTTGTTTTGTGCTT	NA	False	NA	NA	False	AATAAA	-14	NA	36508630	36513341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_36509314_36510828_36510875_36513113
ENSMUSG00000051827.12_6	chrX	+	841	5	FSM	ENSMUSG00000051827.12	ENSMUST00000173650.2	735	5	-19	-87	3	0	multi-exon	FALSE	canonical	1	4	junction_3	65.4618209340376	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36508631	36513339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36508740_36508901_36509314_36510828_36510875_36511141_36511191_36513113
ENSMUSG00000051853.11_1	chr15	-	3534	5	FSM	ENSMUSG00000051853.11	ENSMUST00000053183.12	4566	5	38	994	38	-994	multi-exon	FALSE	canonical	3	612	junction_3	18.4712614620659	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTCTGGCGCAGCCCTTT	1837	False	NA	-13	True	ATTAAA	-12	NA	98661054	98635508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98660860
ENSMUSG00000051853.11_3	chr15	-	3493	6	NNC	ENSMUSG00000051853.11	novel	4566	5	NA	NA	38	-995	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	257.430689701131	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTCTGGCGCAGCCCTT	1837	False	NA	-14	True	ATTAAA	-11	NA	98661054	98635509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_98636403_98636442_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98660860
ENSMUSG00000051853.11_7	chr15	-	3491	6	NNC	ENSMUSG00000051853.11	novel	4566	5	NA	NA	38	-995	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	257.430689701131	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTCTGGCGCAGCCCTT	1837	False	NA	-14	True	ATTAAA	-11	NA	98661054	98635509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_98636401_98636442_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98660860
ENSMUSG00000051853.11_8	chr15	-	1822	1	ISM	ENSMUSG00000051853.11	ENSMUST00000053183.12	4566	5	23762	994	23543	-994	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTCTGGCGCAGCCCTTT	7917	False	NA	-13	True	ATTAAA	-12	NA	98637330	98635508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98635500_98637300
ENSMUSG00000051855.16_0	chr6	+	2550	12	FSM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	4	7	1	-7	multi-exon	FALSE	canonical	3	246	junction_7	40.2939611577855	439	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAATGGATTCCGGCTT	1	True	NA	6	True	AATAAA	-12	NA	30738052	30748454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
ENSMUSG00000051860.14_0	chr3	+	2238	4	ISM	ENSMUSG00000051860.14	ENSMUST00000172593.2	1511	8	5617	-1672	440	1	3prime_fragment	FALSE	canonical	2	5	junction_3	2.44948974278318	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATACCTCAGGCTCTTC	972	False	NA	NA	False	ATTAAA	-10	NA	30810810	30821316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_30810898_30812474_30812594_30816287_30816399_30819395
ENSMUSG00000051864.11_1	chr15	+	3241	13	FSM	ENSMUSG00000051864.11	ENSMUST00000063414.9	3229	13	-14	2	-14	-2	multi-exon	FALSE	canonical	3	67	junction_12	8.71779788708135	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTCTTTTTATTGCA	NA	False	NA	6	True	AATAAA	-15	NA	86098645	86382702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_86098838_86118930_86118988_86119716_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013
ENSMUSG00000051864.11_10	chr15	+	2969	11	ISM	ENSMUSG00000051864.11	ENSMUST00000063414.9	3229	13	21079	3	33	-3	3prime_fragment	FALSE	canonical	3	67	junction_10	8.91291198206288	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGTCTTTTTATTGC	NA	False	NA	5	True	AATAAA	-14	NA	86119738	86382701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013
ENSMUSG00000051864.11_14	chr15	+	1144	1	ISM	ENSMUSG00000051864.11	ENSMUST00000063414.9	3229	13	282899	2	261853	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTCTTTTTATTGCA	NA	False	NA	6	True	AATAAA	-15	NA	86381558	86382702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_86381600_86382700
ENSMUSG00000051890.14_0	chr12	+	269	2	FSM	ENSMUSG00000051890.14	ENSMUST00000127791.2	228	2	-48	7	34	-5	multi-exon	FALSE	canonical	3	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATTATCAGGTCCGAGT	NA	False	NA	NA	False	AATAAA	-19	NA	69288639	69289409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_69288788_69289288
ENSMUSG00000051890.14_1	chr12	+	2553	13	FSM	ENSMUSG00000051890.14	ENSMUST00000063445.13	2620	13	45	22	-37	-22	multi-exon	FALSE	canonical	1	2	junction_6	3.37474278855276	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAAAACTTA	NA	False	NA	NA	False	NA	NA	NA	69288650	69331384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_69288788_69297526_69297598_69298144_69298263_69298701_69298821_69300465_69300545_69302948_69303033_69304796_69304881_69305342_69305402_69306274_69306388_69309922_69309996_69315015_69315101_69316599_69316653_69329906
ENSMUSG00000051900.13_0	chr7	+	1372	3	NIC	ENSMUSG00000051900.13	novel	3551	11	NA	NA	6	-47462	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTTTGTCTATGTGTA	NA	False	NA	NA	False	ATTAAA	-29	NA	120008875	120031460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_120008990_120026352_120026481_120030330
ENSMUSG00000051906.16_2	chr8	-	2137	8	FSM	ENSMUSG00000051906.16	ENSMUST00000145007.8	1186	8	-967	16	-967	-9	multi-exon	FALSE	canonical	1	1	junction_7	2.39045721866879	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAATTCACACATGGTCT	NA	False	NA	NA	False	AATAAA	-3	NA	4156802	4152802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_4153250_4153621_4153735_4154101_4154254_4154484_4154572_4154822_4154892_4155270_4155355_4155465_4155547_4155698
ENSMUSG00000051906.16_6	chr8	-	2498	7	NIC	ENSMUSG00000051906.16	novel	1186	8	NA	NA	-972	-25	intron_retention	FALSE	canonical	1	1	junction_6	2.58198889747161	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAATAAAATATTA	NA	False	NA	NA	False	NA	NA	NA	4156807	4152818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_4153735_4154101_4154254_4154484_4154572_4154822_4154892_4155270_4155355_4155465_4155547_4155698
ENSMUSG00000051910.14_0	chr7	-	867	1	ISM	ENSMUSG00000051910.14	ENSMUST00000206034.2	8668	16	559308	1	126157	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTGTGTTTGGCTTAAT	NA	False	NA	NA	False	ATTAAA	-19	NA	115070974	115070107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_115070100_115071000
ENSMUSG00000051934.6_2	chr15	+	2792	12	NIC	ENSMUSG00000051934.6	novel	3096	13	NA	NA	-2	-9	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	100.076582246046	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACGTGACTCCTTAGCGC	NA	False	NA	9	True	AATAAA	-14	NA	99024434	99111087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99024769_99064960_99065041_99071282_99071392_99072282_99072333_99076187_99076447_99078461_99078642_99083839_99083976_99097088_99097148_99103478_99103589_99106713_99106817_99108762_99108978_99109930
ENSMUSG00000051934.6_3	chr15	+	3084	13	FSM	ENSMUSG00000051934.6	ENSMUST00000063517.6	3096	13	6	6	6	-6	multi-exon	FALSE	canonical	3	296	junction_2	25.9147909289056	680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGACTCCTTAGCGCCGT	NA	False	NA	12	True	AATAAA	-17	NA	99024442	99111090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99024769_99047514_99047812_99064960_99065041_99071282_99071392_99072282_99072333_99076187_99076447_99078461_99078642_99083839_99083976_99097088_99097148_99103478_99103589_99106713_99106817_99108762_99108978_99109930
ENSMUSG00000051950.11_1	chr5	+	4542	15	FSM	ENSMUSG00000051950.11	ENSMUST00000100404.6	4570	15	22	6	22	-6	multi-exon	FALSE	canonical	3	479	junction_13	51.6933659344471	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTATGCTTTGGCTTCTG	NA	False	NA	8	True	AATAAA	-16	NA	149601716	149686058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149668890_149669005_149669969_149670070_149673895_149674016_149677529_149677675_149682903
ENSMUSG00000051950.11_36	chr5	+	2203	1	ISM	ENSMUSG00000051950.11	ENSMUST00000100404.6	4570	15	82166	1	6454	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTTGGCTTCTGTTGTC	5585	False	NA	13	True	AATAAA	-21	NA	149683860	149686063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_149683900_149686100
ENSMUSG00000051977.17_3	chr17	-	3920	3	NIC	ENSMUSG00000051977.17	novel	666	5	NA	NA	15	-332	intron_retention	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCCATATCACTCTTGG	NA	False	NA	NA	False	AAGAAA	-2	NA	15784569	15779462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_15783200_15783482_15783594_15784497
ENSMUSG00000051978.10_0	chr8	-	1566	6	FSM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	-9	0	-9	0	multi-exon	FALSE	canonical	3	204	junction_5	39.1591624016653	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140310	14077560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140240
ENSMUSG00000051978.10_1	chr8	-	1616	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140296	14077560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
ENSMUSG00000051980.14_0	chr16	-	3140	4	ISM	ENSMUSG00000051980.14	ENSMUST00000063597.14	4534	7	52036	-1	51508	1	3prime_fragment	FALSE	canonical	1	1	junction_3	4.54606056566195	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTATAAGGCAGTATTAT	3878	False	NA	NA	False	TATAAA	-22	NA	36330460	36314056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_36316337_36317951_36318076_36320538_36320770_36329955
ENSMUSG00000051980.14_1	chr16	-	4291	7	NNC	ENSMUSG00000051980.14	novel	4534	7	NA	NA	29665	6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	3.90156663690654	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGGCAGTATTATTGAGT	7200	False	NA	NA	False	TATAAA	-27	NA	36352303	36314051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_36316337_36317951_36318076_36320538_36320770_36329955_36330841_36335815_36336123_36337963_36338391_36352271
ENSMUSG00000051984.14_3	chr19	-	4843	25	FSM	ENSMUSG00000051984.14	ENSMUST00000111985.2	3548	25	-1	-1294	-1	1044	multi-exon	TRUE	canonical	2	5	junction_17	4.98051759916131	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGTCTCCTCTGCATCC	NA	False	NA	0	True	AATAAA	-20	NA	44534287	44504351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44505928_44506078_44506151_44506582_44506700_44506956_44507104_44507339_44507399_44507611_44507927_44508861_44509022_44511443_44511606_44512098_44512273_44512867_44513014_44513559_44513687_44513914_44514094_44514654_44514755_44515043_44515143_44515436_44515512_44517104_44517336_44520119_44520210_44520732_44520895_44521032_44521133_44522679_44522823_44523126_44523271_44524143_44524240_44524496_44524693_44532139_44532252_44534226
ENSMUSG00000051989.12_0	chr16	+	506	4	FSM	ENSMUSG00000051989.12	ENSMUST00000063641.11	517	4	9	2	-1	-2	multi-exon	FALSE	canonical	3	229	junction_1	48.3482735529983	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCTGTCTGCATTCTCT	NA	False	NA	24	True	AATAAA	-14	NA	92098182	92109927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_92098232_92102175_92102286_92107688_92107858_92109749
ENSMUSG00000052026.9_0	chr18	-	796	1	ISM	ENSMUSG00000052026.9	ENSMUST00000025520.10	3366	14	18046	1	18030	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTACCTGACTCTGCTA	1884	False	NA	-6	True	AATAAA	-18	NA	61129248	61128452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_61128500_61129200
ENSMUSG00000052026.9_2	chr18	-	1573	2	ISM	ENSMUSG00000052026.9	ENSMUST00000025520.10	3366	14	13679	1	13663	-1	3prime_fragment	FALSE	canonical	3	23	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTACCTGACTCTGCTA	NA	False	NA	-6	True	AATAAA	-18	NA	61133615	61128452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_61129904_61133493
ENSMUSG00000052026.9_9	chr18	-	3253	14	FSM	ENSMUSG00000052026.9	ENSMUST00000025520.10	3366	14	110	3	94	-3	multi-exon	FALSE	canonical	2	6	junction_10	5.15671561910596	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTTTACCTGACTCTGC	NA	False	NA	-8	True	AATAAA	-16	NA	61147184	61128454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_61129904_61133493_61133662_61134363_61134465_61134641_61134742_61135194_61135327_61135397_61135511_61136312_61136438_61136558_61136663_61137460_61137596_61138783_61138923_61140446_61140682_61140787_61140920_61142493_61142678_61147048
ENSMUSG00000052031.9_0	chr17	-	2255	4	FSM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	-1	58	-1	-58	multi-exon	FALSE	non_canonical	0	0	junction_3	227.371941980535	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTACTTGCCGATGTTA	NA	False	NA	-77	True	AATAAA	-22	NA	7228556	7222467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_7224424_7225052_7225168_7228135_7228190_7228426
ENSMUSG00000052031.9_1	chr17	-	2495	3	ISM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	-2	56	-2	-56	intron_retention	FALSE	canonical	3	411	junction_2	60	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTTGCCGATGTTATA	NA	False	NA	-75	True	AATAAA	-24	NA	7228557	7222465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_7224424_7225052_7225168_7228135
ENSMUSG00000052031.9_4	chr17	-	1138	1	ISM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	4952	56	4952	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTTGCCGATGTTATA	NA	False	NA	-75	True	AATAAA	-24	NA	7223603	7222465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_7222500_7223600
ENSMUSG00000052033.14_0	chr2	+	674	4	FSM	ENSMUSG00000052033.14	ENSMUST00000063682.12	935	4	205	56	-5	0	multi-exon	FALSE	canonical	3	676	junction_1	80.8469060769936	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTCTCTATATTATTAT	4047	False	NA	12	True	ATTAAA	-15	NA	170353359	170360987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_170353390_170357658_170357767_170358469_170358611_170360592
ENSMUSG00000052033.14_1	chr2	+	5646	2	NIC	ENSMUSG00000052033.14	novel	816	4	NA	NA	-5	0	intron_retention	FALSE	canonical	3	873	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTCTCTATATTATTAT	4047	False	NA	12	True	ATTAAA	-15	NA	170353359	170360987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_170358611_170360592
ENSMUSG00000052033.14_5	chr2	+	1123	4	FSM	ENSMUSG00000052033.14	ENSMUST00000170167.8	666	4	-102	-355	13	-1	multi-exon	FALSE	canonical	3	5	junction_1	391.486341467433	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGTCTCTATATTATTA	4065	False	NA	11	True	ATTAAA	-14	NA	170353377	170360986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_170353858_170357658_170357767_170358469_170358611_170360592
ENSMUSG00000052033.14_7	chr2	+	644	3	ISM	ENSMUSG00000052033.14	ENSMUST00000109147.3	445	5	3180	-348	848	-1	3prime_fragment	FALSE	canonical	3	792	junction_1	40.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGTCTCTATATTATTA	8345	False	NA	11	True	ATTAAA	-14	NA	170357657	170360986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_170357767_170358469_170358611_170360592
ENSMUSG00000052040.11_0	chr7	-	2746	1	ISM	ENSMUSG00000052040.11	ENSMUST00000063694.10	6396	2	49815	4	35770	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATTTTGTTTGCCTCGGT	NA	False	NA	-17	True	AATAAA	-12	NA	63538848	63536102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_63536100_63538800
ENSMUSG00000052040.11_1	chr7	-	2377	2	FSM	ENSMUSG00000052040.11	ENSMUST00000063694.10	6396	2	25	3994	25	1038	multi-exon	FALSE	canonical	3	56	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAAACCGCACCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	63588638	63540092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_63541546_63587714
ENSMUSG00000052056.15_0	chr2	-	3083	3	ISM	ENSMUSG00000052056.15	ENSMUST00000063710.13	5685	6	16221	4	16221	-1	3prime_fragment	FALSE	canonical	3	35	junction_1	1.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTGGTGTCGTGGTTTT	6266	False	NA	-4	True	AATATA	-16	NA	169956919	169950566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_169952576_169954399_169954535_169955980
ENSMUSG00000052056.15_1	chr2	-	1667	1	ISM	ENSMUSG00000052056.15	ENSMUST00000063710.13	5685	6	20905	6	20905	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTCTGGTGTCGTGGTT	NA	False	NA	-6	True	AATATA	-14	NA	169952235	169950568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_169950600_169952200
ENSMUSG00000052056.15_10	chr2	-	5662	7	FSM	ENSMUSG00000052056.15	ENSMUST00000109155.8	5670	7	5	3	5	-3	multi-exon	FALSE	canonical	1	2	junction_6	14.599276998841	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTCTGGTGTCGTGGTT	NA	False	NA	-6	True	AATATA	-14	NA	169984593	169950568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_169952576_169954399_169954535_169955980_169957493_169958061_169958179_169960938_169962674_169973576_169973673_169984533
ENSMUSG00000052056.15_11	chr2	-	2069	2	ISM	ENSMUSG00000052056.15	ENSMUST00000063710.13	5685	6	18679	6	18679	-3	3prime_fragment	FALSE	canonical	3	35	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTCTGGTGTCGTGGTT	8724	False	NA	-6	True	AATATA	-14	NA	169954461	169950568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_169952576_169954399
ENSMUSG00000052056.15_2	chr2	-	5665	6	FSM	ENSMUSG00000052056.15	ENSMUST00000063710.13	5685	6	16	4	16	-1	multi-exon	FALSE	canonical	3	10	junction_5	10.6695829346793	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTGGTGTCGTGGTTTT	NA	False	NA	-4	True	AATATA	-16	NA	169973124	169950566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_169952576_169954399_169954535_169955980_169957493_169958061_169958179_169960938_169962674_169972967
ENSMUSG00000052056.15_3	chr2	-	3719	4	ISM	ENSMUSG00000052056.15	ENSMUST00000063710.13	5685	6	15014	6	15014	-3	3prime_fragment	FALSE	canonical	3	31	junction_3	2.86744175568088	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTCTGGTGTCGTGGTT	5059	False	NA	-6	True	AATATA	-14	NA	169958126	169950568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_169952576_169954399_169954535_169955980_169957493_169958061
ENSMUSG00000052056.15_5	chr2	-	4397	5	ISM	ENSMUSG00000052056.15	ENSMUST00000063710.13	5685	6	11576	6	11576	-3	3prime_fragment	FALSE	canonical	3	18	junction_4	7.63216876123687	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTCTGGTGTCGTGGTT	9016	False	NA	-6	True	AATATA	-14	NA	169961564	169950568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_169952576_169954399_169954535_169955980_169957493_169958061_169958179_169960938
ENSMUSG00000052102.16_0	chr18	-	2242	7	FSM	ENSMUSG00000052102.16	ENSMUST00000063814.15	2289	7	47	0	-19	0	multi-exon	FALSE	canonical	3	1055	junction_1	137.188434886716	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAATGTGTCTTTTGT	NA	False	NA	-30	True	ATTAAA	-13	NA	38472009	38460610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ENSMUSG00000052102.16_13	chr18	-	2056	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	21	8	-18	0	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAATGTGTCTTTTGT	NA	False	NA	-30	True	ATTAAA	-13	NA	38472008	38460610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ENSMUSG00000052105.18_0	chr17	-	7232	14	FSM	ENSMUSG00000052105.18	ENSMUST00000086693.12	7221	14	-23	12	-23	-6	multi-exon	FALSE	canonical	3	123	junction_12	28.2669020495577	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGCAACAGGGTCTTG	NA	False	NA	-25	True	AATAAA	-9	NA	66756768	66643988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_66645150_66649820_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66686123_66687432_66692854_66692915_66743074_66743234_66745161_66745387_66755311
ENSMUSG00000052105.18_1	chr17	-	2127	2	ISM	ENSMUSG00000052105.18	ENSMUST00000145347.8	5463	12	42119	6	2754	-6	3prime_fragment	FALSE	canonical	3	153	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGCAACAGGGTCTTG	NA	False	NA	-25	True	AATAAA	-9	NA	66650786	66643988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66645150_66649820
ENSMUSG00000052105.18_11	chr17	-	3339	6	ISM	ENSMUSG00000052105.18	ENSMUST00000145347.8	5463	12	27817	6	-11548	-6	3prime_fragment	FALSE	canonical	3	146	junction_3	33.3550595862157	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGCAACAGGGTCTTG	NA	False	NA	-25	True	AATAAA	-9	NA	66665088	66643988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66645150_66649820_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016
ENSMUSG00000052105.18_14	chr17	-	7355	15	NIC	ENSMUSG00000052105.18	novel	7274	15	NA	NA	-23	-6	combination_of_known_junctions	FALSE	canonical	3	31	junction_8	55.073235100998	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGCAACAGGGTCTTG	NA	False	NA	-25	True	AATAAA	-9	NA	66756768	66643988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_66645150_66649820_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66678317_66678441_66684847_66685007_66686123_66687432_66692854_66692915_66743074_66743234_66745161_66745387_66755311
ENSMUSG00000052105.18_15	chr17	-	3770	8	ISM	ENSMUSG00000052105.18	ENSMUST00000145347.8	5463	12	17544	6	6298	-6	3prime_fragment	FALSE	canonical	3	146	junction_3	28.2994194791544	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGCAACAGGGTCTTG	NA	False	NA	-25	True	AATAAA	-9	NA	66675361	66643988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66645150_66649820_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224
ENSMUSG00000052105.18_34	chr17	-	4781	11	ISM	ENSMUSG00000052105.18	ENSMUST00000097291.10	7274	15	-24	10976	-24	4	5prime_fragment	FALSE	canonical	3	123	junction_9	30.9258791305922	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATTGTAGTACAGTTTTC	NA	False	NA	-1	True	AATAAA	-23	NA	66756769	66654956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66686123_66687432_66692854_66692915_66743074_66743234_66745161_66745387_66755311
ENSMUSG00000052105.18_35	chr17	-	2339	7	ISM	ENSMUSG00000052105.18	ENSMUST00000145347.8	5463	12	6013	10975	-966	3	internal_fragment	FALSE	canonical	3	163	junction_5	22.6102238428155	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTGTAGTACAGTTTT	7172	False	NA	-2	True	AATAAA	-22	NA	66686892	66654957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66686123
ENSMUSG00000052105.18_42	chr17	-	4903	12	NIC	ENSMUSG00000052105.18	novel	5441	16	NA	NA	-24	3	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	61.8816519089076	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTGTAGTACAGTTTT	NA	False	NA	-2	True	AATAAA	-22	NA	66756769	66654957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66678317_66678441_66684847_66685007_66686123_66687432_66692854_66692915_66743074_66743234_66745161_66745387_66755311
ENSMUSG00000052105.18_5	chr17	-	4770	10	ISM	ENSMUSG00000052105.18	ENSMUST00000145347.8	5463	12	6035	6	-944	-6	3prime_fragment	FALSE	canonical	3	146	junction_3	25.6923873050384	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGCAACAGGGTCTTG	7194	False	NA	-25	True	AATAAA	-9	NA	66686870	66643988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66645150_66649820_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66686123
ENSMUSG00000052105.18_8	chr17	-	3093	5	ISM	ENSMUSG00000052105.18	ENSMUST00000145347.8	5463	12	31707	6	-7658	-6	3prime_fragment	FALSE	canonical	3	146	junction_3	26.5753645318366	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGCAACAGGGTCTTG	NA	False	NA	-25	True	AATAAA	-9	NA	66661198	66643988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_66645150_66649820_66651361_66653348_66653381_66655237_66655517_66661117
ENSMUSG00000052117.6_0	chr4	-	2673	2	FSM	ENSMUSG00000052117.6	ENSMUST00000063816.6	2830	2	129	28	129	-28	multi-exon	FALSE	canonical	3	12	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACCAACTTTGTCTT	0	True	NA	NA	False	AATGAA	-19	NA	57916168	57908510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_57910612_57915596
ENSMUSG00000052133.17_0	chr16	+	4620	22	FSM	ENSMUSG00000052133.17	ENSMUST00000050625.15	4350	22	-278	8	-69	-8	multi-exon	FALSE	canonical	3	22	junction_14	8.19767125828774	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGAACTGTCTTTGTGC	NA	False	NA	18	True	ATTAAA	-18	NA	35361662	35484623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_35361973_35442946_35443151_35448379_35448480_35453184_35453231_35465752_35465816_35466081_35466181_35466561_35466776_35467413_35467700_35470101_35470238_35471506_35471715_35471849_35472058_35478566_35478685_35478809_35478992_35480019_35480164_35480292_35480441_35480527_35480754_35480849_35481069_35481661_35481833_35481935_35482086_35482659_35482705_35483062_35483269_35483486
ENSMUSG00000052133.17_12	chr16	+	3895	16	ISM	ENSMUSG00000052133.17	ENSMUST00000050625.15	4350	22	104523	9	-12001	-9	3prime_fragment	FALSE	canonical	3	22	junction_8	8.90542905573149	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGGAACTGTCTTTGTG	NA	False	NA	17	True	ATTAAA	-17	NA	35466463	35484622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_35466776_35467413_35467700_35470101_35470238_35471506_35471715_35471849_35472058_35478566_35478685_35478809_35478992_35480019_35480164_35480292_35480441_35480527_35480754_35480849_35481069_35481661_35481833_35481935_35482086_35482659_35482705_35483062_35483269_35483486
ENSMUSG00000052133.17_15	chr16	+	2889	12	ISM	ENSMUSG00000052133.17	ENSMUST00000050625.15	4350	22	109973	9	-6551	-9	3prime_fragment	FALSE	canonical	3	22	junction_4	9.97683266786833	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGGAACTGTCTTTGTG	NA	False	NA	17	True	ATTAAA	-17	NA	35471913	35484622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_35472058_35478566_35478685_35478809_35478992_35480019_35480164_35480292_35480441_35480527_35480754_35480849_35481069_35481661_35481833_35481935_35482086_35482659_35482705_35483062_35483269_35483486
ENSMUSG00000052133.17_16	chr16	+	2611	10	ISM	ENSMUSG00000052133.17	ENSMUST00000050625.15	4350	22	116886	8	-128	-8	3prime_fragment	FALSE	canonical	3	22	junction_2	10.785220797662	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGAACTGTCTTTGTGC	NA	False	NA	18	True	ATTAAA	-18	NA	35478826	35484623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_35478992_35480019_35480164_35480292_35480441_35480527_35480754_35480849_35481069_35481661_35481833_35481935_35482086_35482659_35482705_35483062_35483269_35483486
ENSMUSG00000052133.17_3	chr16	+	2480	3	ISM	ENSMUSG00000052133.17	ENSMUST00000133554.2	2928	6	158	18155	-59	-18155	5prime_fragment	FALSE	canonical	3	26	junction_2	3.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35361672	35450355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_35361973_35442946_35443151_35448379
ENSMUSG00000052133.17_8	chr16	+	3839	17	ISM	ENSMUSG00000052133.17	ENSMUST00000050625.15	4350	22	104199	8	-12325	-8	3prime_fragment	FALSE	canonical	3	22	junction_9	8.76070773396762	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGAACTGTCTTTGTGC	NA	False	NA	18	True	ATTAAA	-18	NA	35466139	35484623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_35466181_35466561_35466776_35467413_35467700_35470101_35470238_35471506_35471715_35471849_35472058_35478566_35478685_35478809_35478992_35480019_35480164_35480292_35480441_35480527_35480754_35480849_35481069_35481661_35481833_35481935_35482086_35482659_35482705_35483062_35483269_35483486
ENSMUSG00000052135.9_0	chr4	-	2985	2	FSM	ENSMUSG00000052135.9	ENSMUST00000102656.4	2615	2	-377	7	-377	-7	multi-exon	FALSE	canonical	3	61	junction_1	0	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTCCCGAGCCTTGG	NA	False	NA	-8	True	AATAAA	-9	NA	120144923	120124282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_120126380_120144035
ENSMUSG00000052135.9_2	chr4	-	2052	1	ISM	ENSMUSG00000052135.9	ENSMUST00000102656.4	2615	2	18214	5	18214	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTCCCGAGCCTTGGGT	8308	False	NA	-6	True	AATAAA	-11	NA	120126332	120124280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_120124300_120126300
ENSMUSG00000052137.12_0	chr4	+	3391	4	NNC	ENSMUSG00000052137.12	novel	3327	4	NA	NA	-57	23	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	14.4299072146089	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTACTAACTTGTATTTGT	-3	True	NA	7	True	AATAAA	-15	NA	12089381	12096266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_12089506_12089662_12089728_12092522_12092573_12093114
ENSMUSG00000052137.12_1	chr4	+	3397	4	FSM	ENSMUSG00000052137.12	ENSMUST00000063839.6	3327	4	-47	-23	-45	23	multi-exon	FALSE	canonical	2	9	junction_1	21.6692306175267	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTACTAACTTGTATTTGT	9	True	NA	7	True	AATAAA	-15	NA	12089393	12096266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_12089524_12089662_12089728_12092522_12092573_12093114
ENSMUSG00000052137.12_10	chr4	+	3523	3	FSM	ENSMUSG00000052137.12	ENSMUST00000095143.9	3147	3	-36	-340	-36	19	multi-exon	FALSE	canonical	3	33	junction_1	14.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACTTACTAACTTGTAT	18	False	NA	3	True	AATAAA	-11	NA	12089402	12096262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_12089728_12092522_12092573_12093114
ENSMUSG00000052137.12_15	chr4	+	2444	1	Genic_Genomic	ENSMUSG00000052137.12	novel	NA	NA	NA	NA	4383	24	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACTAACTTGTATTTGTG	4439	False	NA	8	True	AATAAA	-16	NA	12093823	12096267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_12093800_12096300
ENSMUSG00000052137.12_18	chr4	+	4728	2	ISM	ENSMUSG00000052137.12	ENSMUST00000063839.6	3327	4	1552	-19	1552	19	3prime_fragment	FALSE	canonical	3	62	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACTTACTAACTTGTAT	1608	False	NA	3	True	AATAAA	-11	NA	12090992	12096262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_12092573_12093114
ENSMUSG00000052137.12_3	chr4	+	3467	4	NNC	ENSMUSG00000052137.12	novel	3327	4	NA	NA	-49	21	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	24.3082062046727	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTACTAACTTGTATTT	5	True	NA	5	True	AATAAA	-13	NA	12089389	12096264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_12089524_12089662_12089796_12092522_12092573_12093114
ENSMUSG00000052137.12_5	chr4	+	3448	4	NNC	ENSMUSG00000052137.12	novel	3327	4	NA	NA	-55	19	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	24.9131825880731	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACTTACTAACTTGTAT	-1	True	NA	3	True	AATAAA	-11	NA	12089383	12096262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_12089569_12089662_12089728_12092522_12092573_12093114
ENSMUSG00000052139.19_3	chr5	+	1557	12	FSM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	314	17	2	-17	multi-exon	FALSE	canonical	3	639	junction_9	56.490326824983	537	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACCCTTCTTTCAAGTC	5866	False	NA	18	True	AATAAA	-14	NA	31855341	32242289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
ENSMUSG00000052144.9_0	chr6	+	2920	9	FSM	ENSMUSG00000052144.9	ENSMUST00000063854.7	4874	9	27	1927	27	385	multi-exon	FALSE	canonical	3	518	junction_7	39.1144155011934	822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTGGAGTACATTTTT	9687	False	NA	20	True	AATAAA	-14	NA	100810609	100844968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_100810879_100811677_100811760_100829445_100829617_100838370_100838465_100840083_100840122_100841639_100841715_100842034_100842179_100842748_100843045_100843217
ENSMUSG00000052144.9_1	chr6	+	2775	8	NIC	ENSMUSG00000052144.9	novel	4874	9	NA	NA	28	385	combination_of_known_junctions	FALSE	canonical	3	45	junction_6	200.648235192125	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTGGAGTACATTTTT	9688	False	NA	20	True	AATAAA	-14	NA	100810610	100844968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_100810879_100811677_100811760_100829445_100829617_100838370_100838465_100840083_100840122_100841639_100841715_100842748_100843045_100843217
ENSMUSG00000052144.9_29	chr6	+	2480	2	ISM	ENSMUSG00000052144.9	ENSMUST00000203580.2	1948	6	13287	-894	-262	894	3prime_fragment	FALSE	canonical	3	608	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTCCTGTGACCTTTGA	3669	False	NA	10	True	AATAAA	-10	NA	100842824	100845477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_100843045_100843217
ENSMUSG00000052144.9_31	chr6	+	1286	1	FSM	ENSMUSG00000052144.9	ENSMUST00000203067.2	598	1	597	-1285	597	386	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTGGAGTACATTTTTA	4528	False	NA	21	True	AATAAA	-15	NA	100843683	100844969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_100843700_100845000
ENSMUSG00000052146.17_0	chr17	-	577	6	FSM	ENSMUSG00000052146.17	ENSMUST00000114882.9	887	6	295	15	-6	-9	multi-exon	FALSE	canonical	3	4719	junction_5	828.025700084243	1201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAACATGTCCACTT	NA	False	NA	NA	False	AATAAA	-5	NA	27854224	27849406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27854177
ENSMUSG00000052146.17_1	chr17	-	531	5	FSM	ENSMUSG00000052146.17	ENSMUST00000178774.3	498	5	-1	-32	-1	-9	multi-exon	FALSE	canonical	3	4850	junction_1	728.093915645502	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAACATGTCCACTT	NA	False	NA	NA	False	AATAAA	-5	NA	27853450	27849406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299
ENSMUSG00000052146.17_3	chr17	-	308	4	ISM	ENSMUSG00000052146.17	ENSMUST00000178774.3	498	5	304	-32	83	-9	3prime_fragment	FALSE	canonical	3	4850	junction_1	825.300483998943	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAACATGTCCACTT	NA	False	NA	NA	False	AATAAA	-5	NA	27853145	27849406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045
ENSMUSG00000052151.13_1	chr10	-	1612	6	FSM	ENSMUSG00000052151.13	ENSMUST00000063879.13	1654	6	30	12	6	-7	multi-exon	FALSE	canonical	3	49	junction_5	6.89927532426414	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCTCTGCCATGCATG	NA	False	NA	-12	True	TATAAA	-10	NA	79369600	79362275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369457
ENSMUSG00000052151.13_4	chr10	-	1375	5	ISM	ENSMUSG00000052151.13	ENSMUST00000166804.2	1566	6	2833	0	2830	0	3prime_fragment	FALSE	canonical	3	50	junction_4	6.28490254498827	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCATGCATGTTGATTT	NA	False	NA	-5	True	TATAAA	-17	NA	79366761	79362268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710
ENSMUSG00000052151.13_6	chr10	-	1571	6	FSM	ENSMUSG00000052151.13	ENSMUST00000163602.9	1609	6	26	12	6	-7	multi-exon	FALSE	canonical	3	7	junction_5	21.5462293684997	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCTCTGCCATGCATG	NA	False	NA	-12	True	TATAAA	-10	NA	79369600	79362275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369498
ENSMUSG00000052155.6_1	chr2	+	5631	11	FSM	ENSMUSG00000052155.6	ENSMUST00000063886.4	5686	11	43	12	43	-12	multi-exon	FALSE	canonical	3	42	junction_9	8.77268487978452	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGGTATTATTTGCACA	NA	False	NA	3	True	AATAAA	-44	NA	48704163	48793269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_48704839_48760300_48760509_48763068_48763179_48763330_48763486_48780309_48780454_48782140_48782285_48783518_48783665_48784677_48784793_48786983_48787123_48788489_48788621_48789605
ENSMUSG00000052155.6_12	chr2	+	2209	1	ISM	ENSMUSG00000052155.6	ENSMUST00000063886.4	5686	11	86948	4	10668	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATTTGCACATGCAGTTT	NA	False	NA	11	True	AATAAA	-14	NA	48791068	48793277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_48791100_48793300
ENSMUSG00000052155.6_6	chr2	+	4803	10	NIC	ENSMUSG00000052155.6	novel	5686	11	NA	NA	78	25	intron_retention	FALSE	canonical	3	42	junction_8	9.23760430703401	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGTGTAGTGTGCTGCT	NA	False	NA	NA	False	TATAAA	-33	NA	48704198	48790285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_48704839_48760300_48760509_48763068_48763179_48763330_48763486_48780309_48780454_48782140_48782285_48783518_48783665_48784677_48787123_48788489_48788621_48789605
ENSMUSG00000052160.8_0	chr12	+	2375	10	NIC	ENSMUSG00000052160.8	novel	1982	11	NA	NA	3	-3	intron_retention	FALSE	canonical	3	9	junction_4	2.87174399629335	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTCTGTCTGTGTTCTC	4283	False	NA	NA	False	AATAAA	-42	NA	112727091	112735421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_112727218_112728959_112729044_112729830_112730581_112730881_112731003_112731431_112731560_112733136_112733338_112733931_112734072_112734187_112734354_112734458_112734556_112734859
ENSMUSG00000052160.8_3	chr12	+	1972	11	FSM	ENSMUSG00000052160.8	ENSMUST00000063888.5	1982	11	6	4	-5	-4	multi-exon	FALSE	canonical	3	9	junction_5	2.92574776766556	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATGTCTGTCTGTGTTCT	4286	False	NA	NA	False	AATAAA	-41	NA	112727094	112735420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112727218_112728959_112729044_112729830_112729998_112730396_112730581_112730881_112731003_112731431_112731560_112733136_112733338_112733931_112734072_112734187_112734354_112734458_112734556_112734859
ENSMUSG00000052180.16_1	chr13	-	1376	7	FSM	ENSMUSG00000052180.16	ENSMUST00000110273.9	1325	7	-52	1	-52	0	multi-exon	FALSE	canonical	3	772	junction_6	71.5830908028488	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCAGAACCGAGTGTTT	NA	False	NA	-8	True	AATAAA	-18	NA	34089205	34063799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
ENSMUSG00000052180.16_3	chr13	-	1202	6	NIC	ENSMUSG00000052180.16	novel	1325	7	NA	NA	-53	0	combination_of_known_splicesites	FALSE	canonical	3	94	junction_5	331.741827329627	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCAGAACCGAGTGTTT	NA	False	NA	-8	True	AATAAA	-18	NA	34089206	34063799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34089090
ENSMUSG00000052180.16_5	chr13	-	1332	7	FSM	ENSMUSG00000052180.16	ENSMUST00000172184.2	1327	7	-5	0	-5	0	multi-exon	FALSE	canonical	3	68	junction_6	317.289431486984	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCAGAACCGAGTGTTT	NA	False	NA	-8	True	AATAAA	-18	NA	34089696	34063799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089625
ENSMUSG00000052192.6_0	chr16	-	116	1	FSM	ENSMUSG00000052192.6	ENSMUST00000143451.2	236	1	171	-51	171	51	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGGGGGGGGGGAATCAC	NA	False	NA	-4	True	AATAAA	-16	NA	35393755	35393639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_35393600_35393800
ENSMUSG00000052214.10_0	chr7	+	3298	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	61	7	12	-7	multi-exon	FALSE	canonical	3	147	junction_1	0	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAAGCTGGTTGTCTTCA	3294	False	NA	2	True	AATAAA	-7	NA	18962319	18981786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_18962510_18978678
ENSMUSG00000052214.10_3	chr7	+	2425	1	ISM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	17103	7	17054	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAAGCTGGTTGTCTTCA	NA	False	NA	2	True	AATAAA	-7	NA	18979361	18981786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_18979400_18981800
ENSMUSG00000052234.3_0	chr11	-	1037	4	ISM	ENSMUSG00000052234.3	ENSMUST00000049768.4	2689	13	6806	-1	3038	1	3prime_fragment	FALSE	canonical	3	12	junction_2	4.89897948556636	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCGCTGTCTCTCTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	87759556	87754824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_87755231_87755520_87755734_87756230_87756469_87759376
ENSMUSG00000052234.3_1	chr11	-	1719	6	ISM	ENSMUSG00000052234.3	ENSMUST00000049768.4	2689	13	5279	1	1511	-1	3prime_fragment	FALSE	canonical	2	6	junction_4	6.99714227381436	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGCCCGCTGTCTCTCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	87761083	87754826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_87755231_87755520_87755734_87756230_87756469_87759376_87759548_87760072_87760329_87760646
ENSMUSG00000052253.7_0	chr15	+	1704	6	FSM	ENSMUSG00000052253.7	ENSMUST00000061875.8	2802	6	44	1054	44	0	multi-exon	TRUE	canonical	3	450	junction_2	26.9962960422351	530	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCGTATTTGAGCAGTG	10	False	NA	15	True	AATAAA	-22	NA	25984495	25997513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_25985270_25986883_25987133_25987246_25987410_25991538_25991652_25996191_25996336_25997252
ENSMUSG00000052271.8_0	chr5	+	3493	2	FSM	ENSMUSG00000052271.8	ENSMUST00000060747.8	3494	2	-4	5	-4	-5	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCACGCTGTGGTATAAAT	NA	False	NA	NA	False	AATAAA	-10	NA	144127099	144131254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_144127177_144127838
ENSMUSG00000052281.15_1	chr7	-	5029	2	NIC	ENSMUSG00000052281.15	novel	975	5	NA	NA	-127	-8	intron_retention	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTTCATCTTTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	142561897	142542713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_142547345_142561499
ENSMUSG00000052291.9_0	chr10	+	1935	1	FSM	ENSMUSG00000052291.9	ENSMUST00000218139.2	2235	1	297	3	2	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTGTCGCACCGAAAACT	NA	False	NA	NA	False	AATAAA	-32	NA	116417482	116419417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_116417500_116419400
ENSMUSG00000052291.9_1	chr10	+	686	2	FSM	ENSMUSG00000052291.9	ENSMUST00000219273.2	676	2	-12	2	-12	-2	multi-exon	FALSE	canonical	3	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTGTCGCACCGAAAACT	NA	False	NA	NA	False	AATAAA	-32	NA	116417468	116419417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_116417628_116418890
ENSMUSG00000052293.15_0	chr13	+	1277	3	FSM	ENSMUSG00000052293.15	ENSMUST00000185767.7	778	3	43	-542	1	-2	multi-exon	FALSE	canonical	3	39	junction_1	620	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTCTTGGTACTTTGGCA	NA	False	NA	NA	False	AATAAA	-18	NA	100788134	100792565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_100788295_100790698_100790792_100791541
ENSMUSG00000052293.15_1	chr13	+	1356	3	FSM	ENSMUSG00000052293.15	ENSMUST00000187792.2	824	3	-34	-498	7	-1	multi-exon	FALSE	canonical	3	17	junction_1	631	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTACTTTGGCAG	NA	False	NA	NA	False	AATAAA	-19	NA	100788098	100792566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_100788337_100790698_100790792_100791541
ENSMUSG00000052296.8_6	chr7	-	3834	24	FSM	ENSMUSG00000052296.8	ENSMUST00000064099.8	3862	24	22	6	-7	-6	multi-exon	TRUE	canonical	3	244	junction_23	30.5598053220771	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACATTCCTGCTGTGGGA	NA	False	NA	-9	True	AATAAA	-11	NA	4661996	4634499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4635244_4635339_4635397_4635487_4635599_4636057_4636140_4636271_4636343_4636467_4636601_4636692_4636824_4638963_4639137_4639214_4639273_4642512_4642611_4642689_4642780_4642891_4642978_4643071_4643188_4643307_4643373_4644044_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649940_4661479
ENSMUSG00000052298.13_0	chr11	-	3063	6	FSM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	5	1	5	-1	multi-exon	FALSE	canonical	3	549	junction_4	66.5263857428013	1174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTGTTTGGATTTTTC	NA	False	NA	-13	True	AATAAA	-12	NA	54678496	54608282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
ENSMUSG00000052298.13_1	chr11	-	2906	5	NIC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	8	-1	combination_of_known_splicesites	FALSE	canonical	3	30	junction_4	245.457735669504	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTGTTTGGATTTTTC	NA	False	NA	-13	True	AATAAA	-12	NA	54678493	54608282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54678385
ENSMUSG00000052298.13_5	chr11	-	1459	1	ISM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	68760	1	41424	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTGTTTGGATTTTTC	9292	False	NA	-13	True	AATAAA	-12	NA	54609741	54608282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_54608300_54609700
ENSMUSG00000052299.10_0	chr16	-	6719	30	FSM	ENSMUSG00000052299.10	ENSMUST00000039449.9	7743	30	88	936	39	-936	multi-exon	FALSE	canonical	3	140	junction_26	19.3535231547588	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCATCAACTAGTCAAAATG	NA	False	NA	-14	True	AATAAA	-11	NA	87229412	87174474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_87175896_87176563_87176732_87177554_87177750_87178349_87178571_87179502_87179675_87191409_87191597_87194041_87194117_87194674_87194913_87195539_87195754_87196900_87197052_87197216_87197353_87198913_87199057_87200893_87200999_87202413_87202574_87205587_87205775_87206189_87206335_87207194_87207349_87208506_87208747_87209262_87209450_87212041_87212084_87212438_87213249_87215322_87215459_87217060_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
ENSMUSG00000052299.10_10	chr16	-	5011	21	ISM	ENSMUSG00000052299.10	ENSMUST00000039449.9	7743	30	16598	930	16549	-930	3prime_fragment	FALSE	canonical	3	153	junction_13	19.0690193769895	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAGTCAAAATGACTGTT	NA	False	NA	-8	True	AATAAA	-17	NA	87212902	87174468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_87175896_87176563_87176732_87177554_87177750_87178349_87178571_87179502_87179675_87191409_87191597_87194041_87194117_87194674_87194913_87195539_87195754_87196900_87197052_87197216_87197353_87198913_87199057_87200893_87200999_87202413_87202574_87205587_87205775_87206189_87206335_87207194_87207349_87208506_87208747_87209262_87209450_87212041_87212084_87212438
ENSMUSG00000052301.15_0	chr7	+	2384	11	FSM	ENSMUSG00000052301.15	ENSMUST00000064110.14	2538	11	149	5	4	-5	multi-exon	FALSE	canonical	1	1	junction_1	8.4829240241794	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAGTGGGCTTGAGTTTG	820	False	NA	-1	True	AATAAA	-10	NA	126446873	126451872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126447205_126447586_126448035_126448391_126448472_126448653_126448729_126448833_126448944_126450105_126450233_126450311_126450372_126450454_126450619_126450708_126450791_126450880_126450978_126451062
ENSMUSG00000052302.7_1	chr10	-	5376	13	NIC	ENSMUSG00000052302.7	novel	5695	12	NA	NA	-135	-335	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0.721687836487032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGTGGCGGAGTCATTT	NA	False	NA	-3	True	CATAAA	-12	NA	121187318	121100059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_121103530_121107899_121108107_121111632_121111773_121115002_121115116_121124784_121124891_121130493_121130663_121132596_121132766_121137841_121138028_121140250_121140377_121142060_121142127_121142726_121142789_121183009_121183175_121186921
ENSMUSG00000052310.10_0	chr3	+	2311	4	FSM	ENSMUSG00000052310.10	ENSMUST00000015467.9	2364	4	48	5	48	-5	multi-exon	FALSE	canonical	3	126	junction_1	8.60232526704263	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACTTCTATGGTATCTG	NA	False	NA	-6	True	AATAAA	-11	NA	90155526	90160914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992
ENSMUSG00000052310.10_6	chr3	+	1180	1	ISM	ENSMUSG00000052310.10	ENSMUST00000015467.9	2364	4	4252	9	4252	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATACACTTCTATGGTA	NA	False	NA	-10	True	AATAAA	-7	NA	90159730	90160910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_90159700_90160900
ENSMUSG00000052316.10_0	chr16	-	5306	2	FSM	ENSMUSG00000052316.10	ENSMUST00000064606.8	5310	2	-2	6	-2	-6	multi-exon	FALSE	canonical	3	13	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGGCGAGTGTGTTCTCT	NA	False	NA	-7	True	AATAAA	-9	NA	30102076	30088125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_30093341_30101985
ENSMUSG00000052316.10_1	chr16	-	3266	1	ISM	ENSMUSG00000052316.10	ENSMUST00000064606.8	5310	2	10683	6	10683	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGGCGAGTGTGTTCTCT	NA	False	NA	-7	True	AATAAA	-9	NA	30091391	30088125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_30088100_30091400
ENSMUSG00000052331.15_0	chr1	-	7367	28	NIC	ENSMUSG00000052331.15	novel	6140	28	NA	NA	-9	-12	combination_of_known_junctions	FALSE	canonical	1	2	junction_15	2.75322482074753	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTGTTGCAATGTGTG	NA	False	NA	NA	False	AATAAA	-9	NA	54965522	54684512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_54688760_54690827_54690920_54692901_54692985_54694238_54694322_54694819_54694966_54696774_54696859_54698077_54698166_54700159_54700377_54701812_54701931_54703057_54703146_54706530_54706733_54720278_54720351_54762172_54762285_54766648_54766730_54768892_54769034_54772086_54772156_54774154_54774219_54775388_54775472_54782472_54782588_54792048_54792128_54801419_54801633_54802803_54802947_54805508_54805597_54805942_54806144_54817445_54817517_54831611_54831691_54867770_54867855_54965298
ENSMUSG00000052331.15_3	chr1	-	6279	28	FSM	ENSMUSG00000052331.15	ENSMUST00000179030.8	6140	28	-146	7	-146	-5	multi-exon	FALSE	canonical	1	2	junction_15	2.70395737013985	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAATGTGTGTTTTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	54965692	54684505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_54687495_54690827_54690920_54692901_54692985_54694238_54694322_54694819_54694966_54696774_54696859_54698077_54698166_54700159_54700377_54701812_54701931_54703057_54703146_54706530_54706733_54720278_54720351_54762172_54762285_54766648_54766730_54768892_54769034_54772086_54772156_54774154_54774219_54775388_54775472_54782472_54782588_54792048_54792128_54801419_54801633_54802803_54802947_54805508_54805597_54805942_54806144_54817445_54817517_54831611_54831691_54867770_54867855_54965298
ENSMUSG00000052331.15_8	chr1	-	7384	28	NIC	ENSMUSG00000052331.15	novel	6192	28	NA	NA	32	-8	combination_of_known_junctions	FALSE	canonical	1	2	junction_15	2.97774092477656	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTGCAATGTGTGTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	54965481	54684508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_54688760_54690827_54690920_54692901_54692985_54694238_54694322_54694819_54694966_54696774_54696859_54698077_54698166_54700159_54700377_54701812_54701931_54703057_54703146_54706530_54706733_54720278_54720351_54762172_54762285_54766648_54766730_54768892_54769034_54772086_54772156_54774154_54774273_54775388_54775472_54782472_54782588_54792048_54792128_54801419_54801633_54802803_54802947_54805508_54805597_54805942_54806144_54817445_54817517_54831611_54831691_54867770_54867855_54965298
ENSMUSG00000052334.12_1	chr14	+	1875	7	NNC	ENSMUSG00000052334.12	novel	1573	6	NA	NA	-4477	0	intron_retention	FALSE	canonical	3	21	junction_4	63.0672040146241	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	41761474	41825776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_41761595_41761988_41762060_41765841_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ENSMUSG00000052334.12_4	chr14	+	1606	7	NNC	ENSMUSG00000052334.12	novel	1573	6	NA	NA	-4478	0	intron_retention	TRUE	canonical	3	21	junction_4	63.2262252198845	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	41761473	41825776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_41761595_41761988_41762060_41766111_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ENSMUSG00000052334.12_8	chr14	+	1431	6	NNC	ENSMUSG00000052334.12	novel	1573	6	NA	NA	-4478	0	intron_retention	FALSE	canonical	3	16	junction_2	75.7770413779794	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	41761473	41825776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_41761595_41761988_41762060_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ENSMUSG00000052334.12_9	chr14	+	1574	7	NNC	ENSMUSG00000052334.12	novel	1573	6	NA	NA	-4477	0	intron_retention	FALSE	canonical	3	16	junction_2	69.184937345896	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	41761474	41825776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_41761595_41761988_41762060_41766142_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ENSMUSG00000052337.16_0	chr6	+	2705	15	FSM	ENSMUSG00000052337.16	ENSMUST00000064062.13	2728	15	29	-6	-19	0	multi-exon	FALSE	canonical	3	675	junction_4	225.763692603481	1213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGAGTACTCTATCCC	NA	False	NA	5	True	AATAAA	-12	NA	71808343	71852234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052337.16_17	chr6	+	2575	14	NIC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_5	436.803951799537	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGAGTACTCTATCCC	NA	False	NA	5	True	AATAAA	-12	NA	71808344	71852234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052337.16_2	chr6	+	2672	15	FSM	ENSMUSG00000052337.16	ENSMUST00000101301.10	2299	15	-53	-320	-19	0	multi-exon	TRUE	canonical	3	438	junction_4	278.631248156016	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGAGTACTCTATCCC	NA	False	NA	5	True	AATAAA	-12	NA	71808343	71852234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052337.16_3	chr6	+	2667	15	NIC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	-19	-2	combination_of_known_junctions	TRUE	canonical	3	160	junction_4	344.10840870106	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAACTGAGTACTCTATC	NA	False	NA	3	True	AATAAA	-10	NA	71808343	71852232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829749_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052337.16_4	chr6	+	2608	14	NIC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_5	405.973692563021	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGAGTACTCTATCCC	NA	False	NA	5	True	AATAAA	-12	NA	71808344	71852234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052353.14_2	chr7	-	2309	1	ISM	ENSMUSG00000052353.14	ENSMUST00000064174.12	7111	29	151326	11	9164	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGATGTCATTGTCTTGT	NA	False	NA	NA	False	ATTAAA	-6	NA	83584384	83582075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_83582100_83584400
ENSMUSG00000052364.5_0	chrX	+	2555	1	FSM	ENSMUSG00000052364.5	ENSMUST00000064196.5	2583	1	14	14	14	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAGTTCCCCATTTCGT	NA	False	NA	NA	False	AATACA	-11	NA	8758634	8761189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_8758600_8761200
ENSMUSG00000052368.3_0	chr2	+	2461	2	Genic_Genomic	ENSMUSG00000052368.3	novel	1361	1	NA	NA	-14004	-9	multi-exon	FALSE	canonical	3	17	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTCCATTTCTGGTGTC	NA	False	NA	12	True	AATAAA	-24	NA	168847940	168863296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_168848074_168860968
ENSMUSG00000052368.3_3	chr2	+	1383	1	FSM	ENSMUSG00000052368.3	ENSMUST00000180562.2	1361	1	-33	11	-33	8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTCTCCATTTCTGGTG	NA	False	NA	10	True	AATAAA	-22	NA	168861911	168863294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_168861900_168863300
ENSMUSG00000052369.9_0	chr15	+	1588	8	FSM	ENSMUSG00000052369.9	ENSMUST00000064200.9	1623	8	34	1	-6	0	multi-exon	FALSE	canonical	3	51	junction_1	38.9117263685331	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCACTGTCTCTGACTG	7715	False	NA	10	True	AATAAA	-16	NA	97862144	97868155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_97862385_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ENSMUSG00000052369.9_10	chr15	+	1648	8	NIC	ENSMUSG00000052369.9	novel	1623	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	55.5683069266455	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCACTGTCTCTGACTG	7707	False	NA	10	True	AATAAA	-16	NA	97862136	97868155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_97862385_97862668_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ENSMUSG00000052369.9_2	chr15	+	1432	8	FSM	ENSMUSG00000052369.9	ENSMUST00000229428.2	1455	8	23	0	-4	0	multi-exon	FALSE	canonical	3	86	junction_1	28.3318527024094	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCACTGTCTCTGACTG	7703	False	NA	10	True	AATAAA	-16	NA	97862132	97868155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ENSMUSG00000052369.9_20	chr15	+	1370	8	NIC	ENSMUSG00000052369.9	novel	1455	8	NA	NA	-2	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	55.5683069266455	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGATCTGCACTGTCTCTG	7705	False	NA	6	True	AATAAA	-12	NA	97862134	97868151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_97862161_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ENSMUSG00000052369.9_6	chr15	+	1419	8	NIC	ENSMUSG00000052369.9	novel	1455	8	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	50.2548606644985	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCACTGTCTCTGACT	7704	False	NA	9	True	AATAAA	-15	NA	97862133	97868154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_97862206_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ENSMUSG00000052373.15_3	chr11	-	1300	6	FSM	ENSMUSG00000052373.15	ENSMUST00000147838.8	2834	6	-10	1544	-7	788	multi-exon	FALSE	canonical	2	3	junction_1	2.19089023002066	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGGATGGTTGTGAGCCAC	NA	False	NA	NA	False	NA	NA	NA	101917770	101913471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101914291_101914527_101914609_101915902_101915981_101916206_101916326_101916557_101916683_101917692
ENSMUSG00000052374.17_0	chr13	-	1055	7	ISM	ENSMUSG00000052374.17	ENSMUST00000168193.8	2920	22	61779	-3	3607	3	3prime_fragment	FALSE	canonical	3	42	junction_5	11.7473401244707	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAACTTTGACAAACTTT	NA	False	NA	-3	True	AATAAA	-23	NA	12293826	12284317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_12284539_12285663_12285823_12287584_12287651_12289963_12290111_12291248_12291429_12292284_12292420_12293679
ENSMUSG00000052374.17_5	chr13	-	2807	19	NIC	ENSMUSG00000052374.17	novel	3013	21	NA	NA	3	-1	intron_retention	TRUE	canonical	0	0	junction_8	25.5724581783596	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCTGGAAACTTTGACAAA	NA	False	NA	-7	True	AATAAA	-19	NA	12355610	12284321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_12284539_12285663_12285823_12287584_12287651_12289963_12290111_12291248_12291429_12292284_12292420_12293679_12293863_12295314_12295456_12297400_12297510_12303392_12303544_12305559_12305708_12306545_12306777_12309195_12309289_12315820_12315903_12321159_12321248_12323785_12323873_12324480_12324601_12325732_12325848_12355255
ENSMUSG00000052384.15_0	chr16	-	2434	3	FSM	ENSMUSG00000052384.15	ENSMUST00000099991.11	2548	3	76	38	-15	2	multi-exon	FALSE	canonical	2	4	junction_2	2.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGGGTGTGCCTCATA	NA	False	NA	NA	False	ATTAAA	-15	NA	31984327	31961640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31963824_31966370_31966492_31984197
ENSMUSG00000052384.15_1	chr16	-	2380	3	FSM	ENSMUSG00000052384.15	ENSMUST00000150250.2	360	3	-13	-2007	-13	5	multi-exon	FALSE	canonical	1	2	junction_2	3.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGGTGTGCCTCATAAAT	NA	False	NA	NA	False	ATTAAA	-18	NA	31966949	31961637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31963824_31966370_31966492_31966876
ENSMUSG00000052392.6_1	chr12	+	2158	3	FSM	ENSMUSG00000052392.6	ENSMUST00000021652.5	6203	3	-11	4056	-11	1278	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAGGTCACTTGGAGCC	88	False	NA	NA	False	NA	NA	NA	84085141	84091319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84085742_84088610_84088814_84089964
ENSMUSG00000052395.18_0	chr14	+	2329	13	FSM	ENSMUSG00000052395.18	ENSMUST00000064230.16	2387	13	26	32	-1	-32	multi-exon	FALSE	canonical	3	31	junction_11	8.01171017948103	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	30376342	30413242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30376433_30380265_30380352_30382153_30382271_30383227_30383418_30385034_30385137_30388635_30388774_30396126_30396206_30398806_30398858_30399643_30399775_30401187_30401333_30404707_30404814_30411661_30411912_30412398
ENSMUSG00000052395.18_14	chr14	+	2017	10	ISM	ENSMUSG00000052395.18	ENSMUST00000064230.16	2387	13	6920	42	6873	-42	3prime_fragment	FALSE	canonical	3	31	junction_8	8.82476873407324	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTGTCTCGAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	30383236	30413232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_30383418_30385034_30385137_30388635_30388774_30396126_30396206_30398806_30398858_30399643_30399775_30401187_30401333_30404707_30404814_30411661_30411912_30412398
ENSMUSG00000052395.18_5	chr14	+	2349	13	FSM	ENSMUSG00000052395.18	ENSMUST00000228686.2	2347	13	-14	12	6	-12	multi-exon	FALSE	canonical	3	5	junction_8	13.9351175093718	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTTAAAAAAGATGTGTC	NA	False	NA	NA	False	NA	NA	NA	30376349	30413262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30376433_30380265_30380352_30382153_30382271_30383227_30383418_30385034_30385137_30388635_30388774_30396126_30396206_30398806_30398865_30399643_30399775_30401187_30401333_30404707_30404814_30411661_30411912_30412398
ENSMUSG00000052396.8_0	chr7	-	1770	6	FSM	ENSMUSG00000052396.8	ENSMUST00000064231.8	1780	6	8	2	8	-2	multi-exon	FALSE	canonical	3	105	junction_3	4.4	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCCCTTCTTTTCTCTCT	NA	False	NA	-3	True	AATAAA	-18	NA	98887818	98868292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_98869167_98871459_98871660_98872199_98872375_98872707_98872913_98881664_98881844_98887681
ENSMUSG00000052396.8_1	chr7	-	1737	5	ISM	ENSMUSG00000052396.8	ENSMUST00000064231.8	1780	6	5879	2	5854	-2	3prime_fragment	FALSE	canonical	3	105	junction_3	4.43705983732471	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCCCTTCTTTTCTCTCT	NA	False	NA	-3	True	AATAAA	-18	NA	98881947	98868292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_98869167_98871459_98871660_98872199_98872375_98872707_98872913_98881664
ENSMUSG00000052396.8_2	chr7	-	310	1	ISM	ENSMUSG00000052396.8	ENSMUST00000064231.8	1780	6	19224	2	19199	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCCCTTCTTTTCTCTCT	NA	False	NA	-3	True	AATAAA	-18	NA	98868602	98868292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_98868300_98868600
ENSMUSG00000052397.9_0	chr17	-	2894	13	FSM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	31	239	31	-239	multi-exon	FALSE	canonical	3	786	junction_7	74.9893973987138	1653	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCCTTGTGTCTGATTGC	NA	False	NA	-6	True	AATAAA	-9	NA	7050152	7005678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
ENSMUSG00000052406.15_0	chr2	-	3542	7	ISM	ENSMUSG00000052406.15	ENSMUST00000114020.10	2278	8	64	0	2	0	intron_retention	FALSE	canonical	3	152	junction_5	25.8182751812226	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGAGTGTGTGGAAGTT	NA	False	NA	-9	True	AATAAA	-11	NA	26854334	26843577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850235_26850430_26850614_26850753_26852394
ENSMUSG00000052406.15_1	chr2	-	2212	8	FSM	ENSMUSG00000052406.15	ENSMUST00000114020.10	2278	8	64	2	2	-2	multi-exon	FALSE	canonical	3	152	junction_5	23.9344342497821	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGGAGTGTGTGGAAG	NA	False	NA	-11	True	AATAAA	-9	NA	26854334	26843579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
ENSMUSG00000052406.15_15	chr2	-	2168	3	FSM	ENSMUSG00000052406.15	ENSMUST00000123126.2	644	3	-764	-760	-764	0	multi-exon	FALSE	canonical	3	192	junction_1	5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGAGTGTGTGGAAGTT	NA	False	NA	-9	True	AATAAA	-11	NA	26847362	26843577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26844609_26845506_26845582_26846300
ENSMUSG00000052407.18_0	chr4	+	4345	26	FSM	ENSMUSG00000052407.18	ENSMUST00000231339.2	4549	26	46	158	-23	-73	multi-exon	FALSE	canonical	1	1	junction_18	3.96666106442181	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTCTTATCAGTTGAGT	8735	False	NA	NA	False	ATTAAA	-16	NA	83443827	83782749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_83444008_83454026_83454175_83465070_83465207_83467839_83468015_83472930_83473122_83476135_83476268_83498984_83499132_83519844_83519938_83522258_83522420_83539061_83539201_83553876_83553980_83573764_83573872_83575548_83575639_83576557_83576759_83579952_83580121_83581738_83581928_83599241_83599747_83600535_83600653_83611983_83612211_83612489_83612673_83614487_83614674_83661164_83661311_83670090_83670146_83713436_83713569_83736236_83736390_83782468
ENSMUSG00000052407.18_10	chr4	+	4034	24	ISM	ENSMUSG00000052407.18	ENSMUST00000231339.2	4549	26	51	69211	-18	-3217	5prime_fragment	FALSE	canonical	1	1	junction_18	3.95245849647426	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGTAGCATAAAAACACGTT	8740	False	NA	NA	False	AATAAA	-12	NA	83443832	83713696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_83444008_83454026_83454175_83465070_83465207_83467839_83468015_83472930_83473122_83476135_83476268_83498984_83499132_83519844_83519938_83522258_83522420_83539061_83539201_83553876_83553980_83573764_83573872_83575548_83575639_83576557_83576759_83579952_83580121_83581738_83581928_83599241_83599747_83600535_83600653_83611983_83612211_83612489_83612673_83614487_83614674_83661164_83661311_83670090_83670146_83713436
ENSMUSG00000052414.10_0	chr15	-	4729	2	FSM	ENSMUSG00000023052.9_ENSMUSG00000099083.8	ENSMUST00000184659.2	995	2	-3730	-4	353	-3	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCCCTGTGTTTGGACAA	NA	False	NA	NA	False	AATAAA	-20	NA	102437107	102432276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102432465_102432566
ENSMUSG00000052419.8_0	chr6	-	953	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	53	2171	0	-46	multi-exon	FALSE	canonical	3	64	junction_2	22	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATACTAAAATAGAGAAAA	1	True	NA	NA	False	AATAAA	-18	NA	13871464	13869904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_13870740_13871054_13871146_13871437
ENSMUSG00000052419.8_1	chr6	-	333	1	FSM	ENSMUSG00000052419.8	ENSMUST00000185219.2	1606	1	1218	55	1218	-55	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATATCTAATACTAAAA	2086	False	NA	NA	False	AATAAA	-9	NA	13870246	13869913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_13869900_13870200
ENSMUSG00000052419.8_3	chr6	-	888	2	ISM	ENSMUSG00000052419.8	ENSMUST00000155856.2	1077	3	359	105	358	-45	3prime_fragment	FALSE	canonical	3	108	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATACTAAAATAGAGAAAAT	-5	True	NA	NA	False	AATAAA	-19	NA	13871106	13869903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_13870740_13871054
ENSMUSG00000052423.16_0	chr1	+	1982	8	FSM	ENSMUSG00000052423.16	ENSMUST00000064272.10	1998	8	14	2	-1	-1	multi-exon	FALSE	non_canonical	1	74	junction_2	53.1005976368228	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGCTTGTGATTTCTG	NA	False	NA	13	True	AATAAA	-13	NA	171097911	171104466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ENSMUSG00000052423.16_1	chr1	+	3629	5	NIC	ENSMUSG00000052423.16	novel	2805	6	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	209	junction_1	11.0764389584379	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGCTTGTGATTTCTG	NA	False	NA	13	True	AATAAA	-13	NA	171097904	171104466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ENSMUSG00000052423.16_2	chr1	+	4811	4	NIC	ENSMUSG00000052423.16	novel	2805	6	NA	NA	-5	-1	intron_retention	FALSE	canonical	3	223	junction_2	6.23609564462324	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGCTTGTGATTTCTG	NA	False	NA	13	True	AATAAA	-13	NA	171097918	171104466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_171101714_171101835_171101959_171103454_171103560_171103678
ENSMUSG00000052423.16_3	chr1	+	2087	9	NIC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	1	-1	combination_of_known_junctions	FALSE	non_canonical	1	46	junction_1	80.4478674359986	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGCTTGTGATTTCTG	NA	False	NA	13	True	AATAAA	-13	NA	171097913	171104466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_171097985_171098152_171098260_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ENSMUSG00000052423.16_8	chr1	+	1856	8	NIC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	4	-1	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	74.0904025842892	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGCTTGTGATTTCTG	NA	False	NA	13	True	AATAAA	-13	NA	171097916	171104466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_171097985_171098772_171098944_171099397_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ENSMUSG00000052423.16_9	chr1	+	3102	6	NIC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	0	-1	intron_retention	FALSE	canonical	3	204	junction_1	13.1848397790796	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGCTTGTGATTTCTG	NA	False	NA	13	True	AATAAA	-13	NA	171097912	171104466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ENSMUSG00000052428.11_0	chr1	+	1202	7	FSM	ENSMUSG00000052428.11	ENSMUST00000195015.6	1573	7	368	3	10	-3	multi-exon	FALSE	canonical	3	491	junction_3	23.6108496717552	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGCCTTGTCTCCTGTTC	NA	False	NA	12	True	AATAAA	-19	NA	167136314	167158351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_167136503_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
ENSMUSG00000052446.18_1	chr8	+	2691	4	FSM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	15	7	-5	-7	multi-exon	FALSE	canonical	3	347	junction_3	51.1468474101777	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGTCCAGTTTGTAGA	NA	False	NA	9	True	AATAAA	-11	NA	72704929	72724170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742
ENSMUSG00000052446.18_2	chr8	+	2632	3	FSM	ENSMUSG00000052446.18	ENSMUST00000136516.9	601	3	17	-2048	3	-7	multi-exon	FALSE	canonical	3	96	junction_2	182.5	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGTCCAGTTTGTAGA	NA	False	NA	9	True	AATAAA	-11	NA	72704927	72724170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72705005_72719637_72719765_72721742
ENSMUSG00000052446.18_22	chr8	+	2854	4	FSM	ENSMUSG00000052446.18	ENSMUST00000151168.2	698	4	-6	-2150	-6	-7	multi-exon	FALSE	canonical	3	39	junction_1	148.102066907327	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGTCCAGTTTGTAGA	NA	False	NA	9	True	AATAAA	-11	NA	72707284	72724170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72707523_72719637_72719765_72719943_72720005_72721742
ENSMUSG00000052446.18_3	chr8	+	2761	4	FSM	ENSMUSG00000052446.18	ENSMUST00000145256.8	504	4	16	-2273	-5	-7	multi-exon	FALSE	canonical	3	61	junction_2	168.256418071413	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGTCCAGTTTGTAGA	NA	False	NA	9	True	AATAAA	-11	NA	72704929	72724170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72705005_72719637_72719835_72719943_72720005_72721742
ENSMUSG00000052446.18_34	chr8	+	1853	1	ISM	ENSMUSG00000052446.18	ENSMUST00000131237.8	2689	4	17441	2	15032	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCAGTTTGTAGAGACTC	1741	False	NA	14	True	AATAAA	-16	NA	72722322	72724175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_72722300_72724200
ENSMUSG00000052446.18_4	chr8	+	2685	4	FSM	ENSMUSG00000052446.18	ENSMUST00000138304.8	2307	4	27	-405	2	-2	multi-exon	FALSE	canonical	3	16	junction_2	188.733203814862	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCAGTTTGTAGAGACTC	NA	False	NA	14	True	AATAAA	-16	NA	72704936	72724175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72705005_72719637_72719761_72719943_72720005_72721742
ENSMUSG00000052446.18_5	chr8	+	2509	2	FSM	ENSMUSG00000052446.18	ENSMUST00000144807.2	701	2	7	-1815	-4	0	multi-exon	FALSE	canonical	3	13	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704930	72724177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72705005_72721742
ENSMUSG00000052456.10_0	chr8	-	1250	7	FSM	ENSMUSG00000052456.10	ENSMUST00000064314.10	1256	7	3	3	3	-3	multi-exon	FALSE	canonical	1	664	junction_3	477.58303524681	1199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGTTTGTCAGTGG	8403	False	NA	-7	True	AATAAA	-11	NA	85751907	85744562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
ENSMUSG00000052459.14_0	chr16	-	3950	15	FSM	ENSMUSG00000052459.14	ENSMUST00000114666.9	4234	15	277	7	-10	-7	multi-exon	FALSE	canonical	3	337	junction_14	44.4035299203538	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTAACTTTTCTTTCCCT	NA	False	NA	-7	True	AATAAA	-11	NA	43959391	43905771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
ENSMUSG00000052459.14_3	chr16	-	3951	15	FSM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	181	-236	3	-7	multi-exon	FALSE	canonical	3	151	junction_14	86.121532541792	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTAACTTTTCTTTCCCT	NA	False	NA	-7	True	AATAAA	-11	NA	43959378	43905771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959310
ENSMUSG00000052459.14_6	chr16	-	1468	1	ISM	ENSMUSG00000052459.14	ENSMUST00000114666.9	4234	15	52430	6	52105	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTAACTTTTCTTTCCCTT	NA	False	NA	-6	True	AATAAA	-12	NA	43907238	43905770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_43905800_43907200
ENSMUSG00000052488.8_0	chr8	-	3695	18	FSM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	92	-141	1	0	multi-exon	FALSE	canonical	3	416	junction_13	64.9317448394025	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTTCCTCTAGCTGT	NA	False	NA	-12	True	AATAAA	-10	NA	73228978	73214332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
ENSMUSG00000052488.8_2	chr8	-	3728	18	FSM	ENSMUSG00000052488.8	ENSMUST00000079510.6	3713	18	-15	0	1	0	multi-exon	TRUE	canonical	3	101	junction_13	118.126552277382	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTTCCTCTAGCTGT	NA	False	NA	-12	True	AATAAA	-10	NA	73228978	73214332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222364_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
ENSMUSG00000052488.8_6	chr8	-	3769	17	NIC	ENSMUSG00000052488.8	novel	3713	18	NA	NA	1	0	intron_retention	FALSE	canonical	3	416	junction_13	66.9152624126215	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTTCCTCTAGCTGT	NA	False	NA	-12	True	AATAAA	-10	NA	73228978	73214332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73224072_73224714_73224900_73228455_73228630_73228901
ENSMUSG00000052512.18_12	chr7	+	7796	35	NIC	ENSMUSG00000052512.18	novel	10665	39	NA	NA	8	323	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	4.83391994212982	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTAAACGTAAGATTC	NA	False	NA	NA	False	TATAAA	-13	NA	48895944	49256892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_48896947_49011845_49011964_49022064_49022118_49047830_49047904_49058380_49058655_49069921_49070089_49102146_49103255_49107843_49107957_49111656_49111766_49114287_49114678_49141116_49141240_49185641_49185781_49195547_49195840_49197586_49198290_49206657_49206819_49208455_49208645_49213818_49213872_49214832_49214857_49214953_49215029_49220439_49220524_49220881_49220994_49222055_49222202_49225395_49225569_49232551_49232706_49233797_49233961_49234891_49234993_49237454_49237551_49238897_49239067_49243964_49244201_49246902_49247058_49247249_49247322_49248024_49248222_49248511_49248631_49254172_49254377_49256443
ENSMUSG00000052512.18_16	chr7	+	4944	27	NIC	ENSMUSG00000052512.18	novel	10665	39	NA	NA	14068	323	combination_of_known_splicesites	TRUE	canonical	2	3	junction_6	4.40212428548446	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTAAACGTAAGATTC	NA	False	NA	NA	False	TATAAA	-13	NA	49114575	49256892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_49114678_49141116_49141240_49185641_49185781_49195547_49195840_49197586_49198290_49201344_49201798_49206657_49206819_49208455_49208645_49213818_49213872_49214832_49214857_49214953_49215029_49220439_49220524_49220881_49220994_49222055_49222202_49225395_49225569_49232551_49232706_49233797_49233961_49234891_49234993_49237454_49237551_49238897_49239067_49243964_49244201_49246902_49247058_49247249_49247322_49248024_49248222_49248511_49248631_49254172_49254377_49256443
ENSMUSG00000052512.18_21	chr7	+	2241	12	ISM	ENSMUSG00000052512.18	ENSMUST00000184945.8	10665	39	335828	2952	-2572	317	3prime_fragment	FALSE	canonical	2	6	junction_5	3.93332866414253	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGAAATTTTAAACGTA	NA	False	NA	NA	False	TATAAA	-7	NA	49232419	49256886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_49232706_49233797_49233961_49234891_49234993_49237454_49237551_49238897_49239067_49243964_49244201_49246902_49247058_49247249_49247322_49248024_49248222_49248511_49248631_49254172_49254377_49256443
ENSMUSG00000052512.18_22	chr7	+	729	1	ISM	ENSMUSG00000052512.18	ENSMUST00000064395.13	11317	38	363170	0	21942	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGGTGGTTTGGCTTCT	NA	False	NA	1	True	AATAAA	-19	NA	49259106	49259835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_49259100_49259800
ENSMUSG00000052533.15_0	chr2	+	5679	44	FSM	ENSMUSG00000052533.15	ENSMUST00000064447.12	5710	44	23	8	3	-8	multi-exon	TRUE	canonical	3	896	junction_14	107.189702087653	1754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGCCTGTGTCATGTGG	4871	False	NA	10	True	ATTAAA	-11	NA	30176431	30234270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30194068_30194162_30194293_30194414_30197532_30197745_30199230_30199346_30199889_30200091_30202611_30202702_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
ENSMUSG00000052533.15_126	chr2	+	5630	43	ISM	ENSMUSG00000052533.15	ENSMUST00000064447.12	5710	44	10249	8	10217	-8	3prime_fragment	FALSE	canonical	3	896	junction_13	105.495612529804	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGCCTGTGTCATGTGG	1829	False	NA	10	True	ATTAAA	-11	NA	30186657	30234270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30194068_30194162_30194293_30194414_30197532_30197745_30199230_30199346_30199889_30200091_30202611_30202702_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
ENSMUSG00000052534.16_1	chr1	-	2025	1	ISM	ENSMUSG00000052534.16	ENSMUST00000176540.8	6876	9	274967	1364	7732	-1364	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATACAAAAAAAGAGAA	NA	False	NA	NA	False	AATGAA	-24	NA	167984499	167982474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_167982500_167984500
ENSMUSG00000052539.16_0	chr3	-	6527	21	FSM	ENSMUSG00000052539.16	ENSMUST00000121198.8	5912	21	-267	-348	4	-18	multi-exon	FALSE	canonical	3	26	junction_1	8.46404158779953	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAGAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	104127686	103920592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_103923385_103924816_103924956_103927593_103927738_103928252_103928380_103929090_103929194_103935113_103935300_103941321_103941505_103945852_103946046_103950527_103950620_103954171_103954329_103956459_103956492_103958108_103958715_103961657_103961847_103963828_103963924_103968947_103969006_103987452_103987533_103992523_103992702_103996774_103996985_104002380_104002501_104013046_104013164_104126960
ENSMUSG00000052539.16_10	chr3	-	3888	21	FSM	ENSMUSG00000052539.16	ENSMUST00000122303.2	3827	21	-132	71	4	-71	multi-exon	FALSE	canonical	3	21	junction_1	9.00152764812729	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACATCTGTTTCTGTCT	NA	False	NA	NA	False	ATTAAA	-12	NA	104127686	103923855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_103924009_103924816_103924956_103927593_103927738_103928252_103928380_103929090_103929194_103935113_103935300_103941321_103941505_103945852_103946046_103950527_103950620_103954171_103954329_103956459_103956492_103958108_103958715_103961657_103961847_103963828_103963924_103968947_103969006_103987452_103987533_103992523_103992702_103996774_103996985_104002380_104002501_104013046_104013164_104126960
ENSMUSG00000052539.16_2	chr3	-	6618	22	FSM	ENSMUSG00000052539.16	ENSMUST00000064371.14	6640	22	4	18	4	-18	multi-exon	FALSE	canonical	3	11	junction_1	11.0079336469023	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAGAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	104127686	103920592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_103923385_103923917_103924009_103924816_103924956_103927593_103927738_103928252_103928380_103929090_103929194_103935113_103935300_103941321_103941505_103945852_103946046_103950527_103950620_103954171_103954329_103956459_103956492_103958108_103958715_103961657_103961847_103963828_103963924_103968947_103969006_103987452_103987533_103992523_103992702_103996774_103996985_104002380_104002501_104013046_104013164_104126960
ENSMUSG00000052539.16_3	chr3	-	2119	1	ISM	ENSMUSG00000052539.16	ENSMUST00000064371.14	6640	22	204982	15	46871	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAAAAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	103922708	103920589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_103920600_103922700
ENSMUSG00000052539.16_8	chr3	-	4895	12	ISM	ENSMUSG00000052539.16	ENSMUST00000122303.2	3827	21	169326	-3195	11351	-15	3prime_fragment	FALSE	canonical	3	21	junction_1	9.09817891141586	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAAAAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	103958228	103920589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_103924009_103924816_103924956_103927593_103927738_103928252_103928380_103929090_103929194_103935113_103935300_103941321_103941505_103945852_103946046_103950527_103950620_103954171_103954329_103956459_103956492_103958108
ENSMUSG00000052539.16_9	chr3	-	3694	8	ISM	ENSMUSG00000052539.16	ENSMUST00000121198.8	5912	21	181550	-351	23710	-15	3prime_fragment	FALSE	canonical	3	26	junction_1	8.63311138842179	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAAAAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	103945869	103920589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_103923385_103924816_103924956_103927593_103927738_103928252_103928380_103929090_103929194_103935113_103935300_103941321_103941505_103945852
ENSMUSG00000052544.10_0	chr3	-	2350	3	NNC	ENSMUSG00000052544.10	novel	416	3	NA	NA	-134273	1897	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	46	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGAGCGTTGTTTTCTC	NA	False	NA	-6	True	AATAAA	-22	NA	153065693	152909105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_152911229_152912254_152912363_153065574
ENSMUSG00000052544.10_11	chr3	-	2848	5	NNC	ENSMUSG00000052544.10	novel	8169	5	NA	NA	243	1897	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	48.9917084821503	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGAGCGTTGTTTTCTC	NA	False	NA	-6	True	AATAAA	-22	NA	153215136	152909105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_152911229_152912254_152912366_152953583_152953591_153117098_153117509_153214939
ENSMUSG00000052544.10_9	chr3	-	2957	6	NNC	ENSMUSG00000052544.10	novel	8169	5	NA	NA	19	1895	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	47.8012552136448	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTGAGCGTTGTTTTC	NA	False	NA	-8	True	AATAAA	-20	NA	153430792	152909107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_152911229_152912254_152912366_152953583_152953591_153117098_153117509_153214939_153215137_153430681
ENSMUSG00000052557.12_0	chr8	+	3447	11	FSM	ENSMUSG00000052557.12	ENSMUST00000064488.11	2652	11	-153	-642	-153	642	multi-exon	TRUE	canonical	3	16	junction_7	6.18465843842649	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAGCAATCCTATTTTC	NA	False	NA	NA	False	ATTAAA	-9	NA	117884720	117932567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_117885041_117910239_117910355_117913885_117914237_117917010_117917229_117917402_117917525_117919978_117920092_117920851_117921002_117922504_117922642_117923190_117923320_117930688_117930799_117930885
ENSMUSG00000052557.12_6	chr8	+	3653	1	ISM	ENSMUSG00000052557.12	ENSMUST00000162997.3	13461	11	54206	2	54206	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACATTTGAATCCCTTTG	NA	False	NA	2	True	AATAAA	-15	NA	117939081	117942734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_117939100_117942700
ENSMUSG00000052560.16_0	chr15	-	3277	20	FSM	ENSMUSG00000052560.16	ENSMUST00000064391.12	3366	20	83	6	22	-6	multi-exon	FALSE	canonical	0	0	junction_15	2.20676371507754	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGATAGCTTGCCTTAT	NA	False	NA	NA	False	ATTAAA	-7	NA	90563552	90371691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_90373379_90381267_90381342_90384087_90384146_90385613_90385717_90393697_90393826_90400110_90400293_90406110_90406158_90424434_90424497_90425459_90425514_90436176_90436253_90452451_90452494_90453662_90453768_90456147_90456252_90469080_90469145_90486015_90486093_90499313_90499354_90503834_90503939_90532780_90532828_90533445_90533487_90563370
ENSMUSG00000052563.14_11	chr11	+	2297	1	ISM	ENSMUSG00000052563.14	ENSMUST00000117859.8	3410	4	4430	1	4428	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTCGTTCCTGACTACA	NA	False	NA	11	True	AATAAA	-17	NA	51546210	51548507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_51546200_51548500
ENSMUSG00000052563.14_14	chr11	+	4218	2	ISM	ENSMUSG00000052563.14	ENSMUST00000117859.8	3410	4	-14	4	-14	-3	intron_retention	FALSE	canonical	3	17	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTCGTTCCTGACT	NA	False	NA	8	True	AATAAA	-14	NA	51541766	51548504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_51542041_51544560
ENSMUSG00000052563.14_2	chr11	+	3411	4	FSM	ENSMUSG00000052563.14	ENSMUST00000117859.8	3410	4	-2	1	-2	0	multi-exon	FALSE	canonical	2	4	junction_2	6.94422221866655	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTCGTTCCTGACTACA	NA	False	NA	11	True	AATAAA	-17	NA	51541778	51548507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_51542041_51544560_51544699_51544837_51544941_51545599
ENSMUSG00000052563.14_3	chr11	+	3552	3	NIC	ENSMUSG00000052563.14	novel	3426	4	NA	NA	-4	0	intron_retention	FALSE	canonical	3	17	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTCGTTCCTGACTACA	NA	False	NA	11	True	AATAAA	-17	NA	51541776	51548507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_51542041_51544560_51544941_51545599
ENSMUSG00000052563.14_4	chr11	+	3431	4	FSM	ENSMUSG00000052563.14	ENSMUST00000064493.6	3426	4	-8	3	-6	-3	multi-exon	FALSE	canonical	3	9	junction_2	4.64279609239471	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTCGTTCCTGACT	NA	False	NA	8	True	AATAAA	-14	NA	51541774	51548504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_51542041_51544560_51544699_51544818_51544941_51545599
ENSMUSG00000052563.14_5	chr11	+	4115	3	ISM	ENSMUSG00000052563.14	ENSMUST00000064493.6	3426	4	-32	2	-30	-2	intron_retention	FALSE	canonical	3	9	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTCGTTCCTGACTA	NA	False	NA	9	True	AATAAA	-15	NA	51541750	51548505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_51542041_51544560_51544699_51544818
ENSMUSG00000052566.9_10	chr8	+	2570	22	NNC	ENSMUSG00000052566.9	novel	2580	22	NA	NA	0	-1	intron_retention	TRUE	canonical	3	109	junction_18	72.710434300971	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTATGAGCGTTTTTGC	NA	False	NA	11	True	AATAAA	-7	NA	85717245	85729971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85724921_85725118_85725154_85727783_85727867_85727952_85728054_85729132_85729244_85729315_85729388_85729493
ENSMUSG00000052566.9_6	chr8	+	2568	22	FSM	ENSMUSG00000052566.9	ENSMUST00000064495.8	2580	22	7	5	7	1	multi-exon	FALSE	canonical	3	335	junction_11	39.7071479254288	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGCGTTTTTGCCT	NA	False	NA	13	True	AATAAA	-9	NA	85717252	85729973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85724921_85725118_85725154_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
ENSMUSG00000052584.11_0	chr14	-	615	2	ISM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	16770	-1	16404	-1	3prime_fragment	FALSE	canonical	3	106	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACCATGTGCGAGTTAC	NA	False	NA	-3	True	AATAAA	-17	NA	76777528	76770254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_76770687_76777345
ENSMUSG00000052584.11_1	chr14	-	873	4	ISM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	-2	6653	-2	101	5prime_fragment	FALSE	canonical	3	14	junction_1	8.04155872120988	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAGAGCAGAGTCCCAGT	NA	False	NA	NA	False	AATAAA	-18	NA	76794300	76776908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_76777495_76787421_76787495_76793870_76793989_76794204
ENSMUSG00000052584.11_10	chr14	-	745	3	FSM	ENSMUSG00000052584.11	ENSMUST00000064517.9	748	3	3	0	3	0	multi-exon	FALSE	canonical	3	10	junction_1	9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCATGTGCGAGTTACC	NA	False	NA	-2	True	AATAAA	-18	NA	76794109	76770253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_76770687_76787421_76787495_76793870
ENSMUSG00000052584.11_2	chr14	-	894	5	FSM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	-27	-2	4	0	multi-exon	FALSE	canonical	3	14	junction_2	35.7587401903367	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCATGTGCGAGTTACC	NA	False	NA	-2	True	AATAAA	-18	NA	76794325	76770253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_76770687_76777345_76777495_76787421_76787495_76793870_76793989_76794204
ENSMUSG00000052584.11_3	chr14	-	895	4	ISM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	188	-2	2	0	3prime_fragment	FALSE	canonical	3	14	junction_2	40.4749579644281	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCATGTGCGAGTTACC	NA	False	NA	-2	True	AATAAA	-18	NA	76794110	76770253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_76770687_76777345_76777495_76787421_76787495_76793870
ENSMUSG00000052584.11_6	chr14	-	693	4	NIC	ENSMUSG00000052584.11	novel	865	5	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	9.8770215933527	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCATGTGCGAGTTACC	NA	False	NA	-2	True	AATAAA	-18	NA	76794273	76770253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_76770687_76787421_76787495_76793870_76793989_76794204
ENSMUSG00000052584.11_7	chr14	-	819	3	NIC	ENSMUSG00000052584.11	novel	865	5	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	50.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATACCATGTGCGAGTTA	NA	False	NA	-4	True	AATAAA	-16	NA	76794109	76770255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_76770687_76777345_76777495_76793870
ENSMUSG00000052593.17_16	chr12	-	1462	1	ISM	ENSMUSG00000052593.17	ENSMUST00000101551.10	4469	20	48322	301	4019	1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGTCTTAATTGTATT	9212	False	NA	-6	True	TATAAA	-19	NA	21375272	21373810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_21373800_21375300
ENSMUSG00000052593.17_2	chr12	-	4088	19	FSM	ENSMUSG00000052593.17	ENSMUST00000064536.13	4443	19	62	293	23	1	multi-exon	FALSE	canonical	3	115	junction_17	16.3499537508313	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGTCTTAATTGTATT	NA	False	NA	-6	True	TATAAA	-19	NA	21423571	21373810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379134_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621_21395712_21397297_21397432_21399785_21399955_21401543_21401633_21403883_21404015_21411659_21411793_21423336
ENSMUSG00000052593.17_9	chr12	-	3148	13	ISM	ENSMUSG00000052593.17	ENSMUST00000127974.8	4423	19	27932	293	-1432	1	3prime_fragment	FALSE	canonical	3	118	junction_12	16.1701027276336	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGTCTTAATTGTATT	NA	False	NA	-6	True	TATAAA	-19	NA	21395662	21373810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379134_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621
ENSMUSG00000052609.10_33	chr12	+	3114	4	ISM	ENSMUSG00000052609.10	ENSMUST00000218427.2	4815	6	979	1451	979	-2	3prime_fragment	FALSE	canonical	3	68	junction_1	2.62466929133727	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAACCTGTGTGTGGCCTC	NA	False	NA	17	True	NA	NA	NA	76619302	76625811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76619520_76620020_76620135_76622630_76624051_76624448
ENSMUSG00000052609.10_34	chr12	+	851	1	ISM	ENSMUSG00000052609.10	ENSMUST00000075249.6	5138	19	44810	2	6640	1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCTGTGTGTGGCCTCCTT	NA	False	NA	20	True	NA	NA	NA	76624963	76625814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76625000_76625800
ENSMUSG00000052609.10_35	chr12	+	2164	2	ISM	ENSMUSG00000052609.10	ENSMUST00000218427.2	4815	6	4925	1452	4925	-3	3prime_fragment	FALSE	canonical	3	69	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAACCTGTGTGTGGCCT	NA	False	NA	16	True	NA	NA	NA	76623248	76625810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76624051_76624448
ENSMUSG00000052609.10_5	chr12	+	4956	18	NIC	ENSMUSG00000052609.10	novel	4535	18	NA	NA	-4	-3	combination_of_known_junctions	FALSE	canonical	3	24	junction_13	13.5993079408692	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAACCTGTGTGTGGCCT	7220	False	NA	16	True	NA	NA	NA	76580329	76625810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_76580593_76606902_76607293_76608979_76609078_76610528_76610599_76610870_76610918_76611030_76611182_76611275_76611408_76611571_76611755_76611932_76612026_76612265_76612353_76612557_76612592_76612941_76613041_76618377_76618417_76618820_76618844_76619168_76619520_76620020_76620135_76622630_76624051_76624448
ENSMUSG00000052609.10_6	chr12	+	4949	18	FSM	ENSMUSG00000052609.10	ENSMUST00000219063.2	4535	18	-60	-354	0	-3	multi-exon	FALSE	canonical	3	37	junction_13	11.6696157090046	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAACCTGTGTGTGGCCT	7224	False	NA	16	True	NA	NA	NA	76580333	76625810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_76580593_76606902_76607293_76608979_76609078_76610528_76610599_76610870_76610918_76611030_76611182_76611275_76611408_76611571_76611755_76611932_76612026_76612265_76612353_76612557_76612592_76612941_76613041_76618377_76618417_76618823_76618844_76619168_76619520_76620020_76620135_76622630_76624051_76624448
ENSMUSG00000052629.6_0	chr7	+	949	1	FSM	ENSMUSG00000052629.6	ENSMUST00000064591.5	2205	1	-258	1514	-258	-1514	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGCGAGCTATTTCCTG	NA	False	NA	12	True	AATAAA	-19	NA	78228319	78229268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_78228300_78229300
ENSMUSG00000052632.17_18	chr12	+	5630	28	NIC	ENSMUSG00000052632.17	novel	5678	29	NA	NA	33	-7	combination_of_known_junctions	FALSE	canonical	1	3	junction_23	19.3616934039294	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGACATGGTTCATCTG	NA	False	NA	13	True	AATAAA	-9	NA	21161789	21320165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_21162171_21218204_21218278_21235098_21235245_21249544_21249620_21250880_21250931_21253960_21254091_21256303_21256390_21262809_21262886_21263139_21263227_21267975_21268080_21268188_21268259_21274305_21274394_21279239_21279289_21279374_21279542_21280823_21280958_21289555_21289651_21294686_21294877_21297288_21297375_21299302_21299419_21301139_21301208_21302741_21302856_21304215_21304469_21306475_21306611_21308010_21308177_21315131_21315182_21315463_21315535_21315888_21316012_21317718
ENSMUSG00000052632.17_3	chr12	+	5524	27	FSM	ENSMUSG00000052632.17	ENSMUST00000050990.10	3345	27	-194	-1985	4	-7	multi-exon	FALSE	canonical	3	55	junction_4	9.27784470482579	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGACATGGTTCATCTG	NA	False	NA	13	True	AATAAA	-9	NA	21161760	21320165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_21162171_21218204_21218278_21235098_21235245_21249544_21249620_21250880_21250931_21253960_21254091_21256303_21256390_21262809_21262886_21263139_21263227_21267975_21268080_21268188_21268259_21274305_21274394_21279239_21279289_21279374_21279542_21280823_21280958_21289555_21289651_21294686_21294877_21297288_21297375_21299302_21299419_21301139_21301208_21302741_21302856_21304215_21304469_21308010_21308177_21315131_21315182_21315463_21315535_21315888_21316012_21317718
ENSMUSG00000052632.17_35	chr12	+	2026	1	ISM	ENSMUSG00000052632.17	ENSMUST00000064595.15	5678	29	156394	4	156188	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACATGGTTCATCTGTAA	1721	False	NA	16	True	AATAAA	-12	NA	21318142	21320168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_21318100_21320200
ENSMUSG00000052656.13_0	chr6	+	3251	4	FSM	ENSMUSG00000052656.13	ENSMUST00000064637.11	3264	4	5	8	5	-8	multi-exon	FALSE	canonical	3	15	junction_3	2.16024689946929	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCAGAAGGTTGTAGGT	NA	False	NA	-3	True	AATAAA	-8	NA	71470882	71487857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_71471873_71473814_71473955_71482717_71482834_71485852
ENSMUSG00000052675.12_0	chr7	+	3175	4	FSM	ENSMUSG00000052675.12	ENSMUST00000215113.2	2628	4	-146	-401	-146	144	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAAAATGGACCCATGCT	NA	False	NA	NA	False	AATAAA	-2	NA	23817647	23827062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_23817809_23821658_23821786_23823343_23823428_23824259
ENSMUSG00000052675.12_1	chr7	+	1906	1	ISM	ENSMUSG00000052675.12	ENSMUST00000120006.8	3464	4	13429	304	7374	155	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGCTGCTCCTTTATA	NA	False	NA	NA	False	AATAAA	-13	NA	23825167	23827073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_23825200_23827100
ENSMUSG00000052676.17_2	chrX	-	3491	7	FSM	ENSMUSG00000052676.17	ENSMUST00000064659.6	3501	7	10	0	10	0	multi-exon	FALSE	canonical	0	0	junction_4	2.08166599946613	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGCTTTGTGATCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	133909948	133872123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133874776_133878396_133878497_133891312_133891379_133892883_133893059_133893145_133893248_133894287_133894395_133909659
ENSMUSG00000052681.9_2	chr10	-	2002	8	FSM	ENSMUSG00000052681.9	ENSMUST00000064667.9	2724	8	53	669	53	-669	multi-exon	FALSE	canonical	3	789	junction_2	110.417205107146	1017	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCCACTGAATGTGTTT	8658	False	NA	-17	True	AATAAA	-35	NA	117681887	117650444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_117651686_117653248_117653366_117654370_117654515_117656366_117656508_117657494_117657552_117658705_117658775_117660498_117660580_117681735
ENSMUSG00000052684.5_0	chr4	-	2602	1	FSM	ENSMUSG00000052684.5	ENSMUST00000107094.2	3189	1	22	565	22	-565	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTTGTTTCTGAAAATT	5531	False	NA	NA	False	AATAAA	-16	NA	94940437	94937835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_94937800_94940400
ENSMUSG00000052698.16_11	chr9	-	8449	59	NNC	ENSMUSG00000052698.16	novel	12132	58	NA	NA	-74341	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_58	17.1195697102182	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTGGAGTCACAGAGGT	NA	False	NA	-8	True	AATAAA	-21	NA	67541326	67128192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_67128801_67131257_67131384_67134389_67134573_67134663_67134727_67136613_67136740_67147961_67148087_67149608_67149715_67157824_67157933_67163140_67163327_67165469_67165587_67165743_67165870_67169172_67169357_67170095_67170263_67174058_67174206_67179891_67180012_67182602_67182705_67185264_67185412_67193739_67193911_67197263_67197366_67201086_67201220_67202916_67203099_67203583_67203725_67209755_67209918_67212117_67212262_67213701_67213825_67216151_67216242_67219082_67219177_67225464_67225605_67226598_67226797_67229120_67229241_67230254_67230464_67237829_67237933_67239013_67239143_67241471_67241607_67245491_67245606_67247563_67247678_67249316_67249446_67251347_67251515_67253602_67253898_67255403_67255572_67261727_67261827_67262344_67262554_67263941_67264051_67268603_67268718_67269918_67270100_67273186_67273264_67274411_67274514_67277893_67278050_67283009_67283115_67284088_67284153_67293838_67293967_67295851_67295995_67299733_67299887_67300856_67300987_67302735_67302834_67304793_67304966_67367197_67367272_67466895_67466973_67541172
ENSMUSG00000052698.16_12	chr9	-	8704	59	NNC	ENSMUSG00000052698.16	novel	12132	58	NA	NA	-74330	-4	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_58	17.5065895526389	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGCAAAGCTGTTTCAG	NA	False	NA	-11	True	AATAAA	-15	NA	67541315	67127939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_67128801_67131257_67131384_67134389_67134573_67134663_67134727_67136613_67136740_67147961_67148087_67149608_67149715_67157824_67157933_67163140_67163327_67165469_67165587_67165743_67165870_67169172_67169357_67170095_67170263_67174058_67174206_67179891_67180012_67182602_67182705_67185264_67185412_67193739_67193911_67197263_67197366_67201086_67201220_67202916_67203099_67203583_67203725_67209755_67209918_67212117_67212262_67213701_67213825_67216151_67216242_67219082_67219177_67225464_67225605_67226598_67226797_67229120_67229241_67230254_67230464_67237829_67237933_67239013_67239143_67241471_67241607_67245491_67245606_67247563_67247678_67249316_67249446_67251347_67251515_67253602_67253898_67255403_67255572_67261727_67261827_67262344_67262554_67263941_67264051_67268603_67268718_67269918_67270100_67273186_67273264_67274411_67274514_67277893_67278050_67283009_67283115_67284088_67284153_67293838_67293967_67295851_67295995_67299733_67299887_67300856_67300987_67302735_67302834_67304793_67304966_67367197_67367272_67466895_67466986_67541172
ENSMUSG00000052698.16_2	chr9	-	3156	1	ISM	ENSMUSG00000052698.16	ENSMUST00000040025.14	12132	58	339457	4	11161	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAACTTGTGTGAAGGTT	NA	False	NA	NA	False	AATAAA	-11	NA	67127528	67124372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_67124400_67127500
ENSMUSG00000052698.16_23	chr9	-	4279	27	ISM	ENSMUSG00000052698.16	ENSMUST00000215267.2	4999	33	15827	-253	-15394	-4	3prime_fragment	FALSE	canonical	3	58	junction_25	13.429852819207	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGCAAAGCTGTTTCAG	NA	False	NA	-11	True	AATAAA	-15	NA	67219119	67127939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_67128801_67131257_67131384_67134389_67134573_67134663_67134727_67136613_67136740_67147961_67148087_67149608_67149715_67157824_67157933_67163140_67163327_67165469_67165587_67165743_67165870_67169172_67169357_67170095_67170263_67174058_67174206_67179891_67180012_67182602_67182705_67185264_67185412_67193739_67193911_67197263_67197366_67201086_67201220_67202916_67203099_67203583_67203725_67209755_67209918_67212117_67212262_67213701_67213825_67216151_67216242_67219082
ENSMUSG00000052698.16_28	chr9	-	8055	54	ISM	ENSMUSG00000052698.16	ENSMUST00000215784.2	8330	59	145983	-251	35171	-4	3prime_fragment	FALSE	canonical	3	34	junction_48	16.2270513258331	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGCAAAGCTGTTTCAG	NA	False	NA	-11	True	AATAAA	-15	NA	67300914	67127939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_67128801_67131257_67131384_67134389_67134573_67134663_67134727_67136613_67136740_67147961_67148087_67149608_67149715_67157824_67157933_67163140_67163327_67165469_67165587_67165743_67165870_67169172_67169357_67170095_67170263_67174058_67174206_67179891_67180012_67182602_67182705_67185264_67185412_67193739_67193911_67197263_67197366_67201086_67201220_67202916_67203099_67203583_67203725_67209755_67209918_67212117_67212262_67213701_67213825_67216151_67216242_67219082_67219177_67225464_67225605_67226598_67226797_67229120_67229241_67230254_67230464_67237829_67237933_67239013_67239143_67241471_67241607_67245491_67245606_67247563_67247678_67249316_67249446_67251347_67251515_67253602_67253898_67255403_67255572_67261727_67261827_67262344_67262554_67263941_67264051_67268603_67268718_67269918_67270100_67273186_67273264_67274411_67274514_67277893_67278050_67283009_67283115_67284088_67284153_67293838_67293967_67295851_67295995_67299733_67299887_67300856
ENSMUSG00000052698.16_31	chr9	-	3947	24	ISM	ENSMUSG00000052698.16	ENSMUST00000215267.2	4999	33	22767	-253	-8454	-4	3prime_fragment	TRUE	canonical	3	59	junction_21	13.1672389465096	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGCAAAGCTGTTTCAG	NA	False	NA	-11	True	AATAAA	-15	NA	67212179	67127939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_67128801_67131257_67131384_67134389_67134573_67134663_67134727_67136613_67136740_67147961_67148087_67149608_67149715_67157824_67157933_67163140_67163327_67165469_67165587_67165743_67165870_67169172_67169357_67170095_67170263_67174058_67174206_67179891_67180012_67182602_67182705_67185264_67185412_67193739_67193911_67197263_67197366_67201086_67201220_67202916_67203099_67203583_67203725_67209755_67209918_67212117
ENSMUSG00000052698.16_5	chr9	-	3145	20	ISM	ENSMUSG00000052698.16	ENSMUST00000215267.2	4999	33	33729	0	2508	0	3prime_fragment	FALSE	canonical	3	61	junction_19	12.5207860417185	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTGGAGTCACAGAGGT	7141	False	NA	-8	True	AATAAA	-21	NA	67201217	67128192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_67128801_67131257_67131384_67134389_67134573_67134663_67134727_67136613_67136740_67147961_67148087_67149608_67149715_67157824_67157933_67163140_67163327_67165469_67165587_67165743_67165870_67169172_67169357_67170095_67170263_67174058_67174206_67179891_67180012_67182602_67182705_67185264_67185412_67193739_67193911_67197263_67197366_67201086
ENSMUSG00000052707.9_11	chr7	+	6825	23	NIC	ENSMUSG00000052707.9	novel	8183	24	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	33.5151686393731	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122723410	122793201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_122723556_122723890_122723939_122742972_122743061_122751386_122751409_122761716_122762101_122768758_122771342_122772455_122772633_122773366_122773543_122776046_122776128_122776904_122776957_122778939_122779083_122779762_122779901_122780541_122780671_122781178_122781257_122781468_122781677_122783378_122783511_122785785_122785945_122786575_122786717_122788010_122788119_122789067_122789290_122790722_122790794_122791281_122791422_122791801
ENSMUSG00000052707.9_4	chr7	+	6858	24	FSM	ENSMUSG00000052707.9	ENSMUST00000094053.7	8183	24	7	1318	7	0	multi-exon	FALSE	canonical	3	73	junction_8	29.037424518788	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122723410	122793201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_122723556_122723890_122723939_122742972_122743061_122751386_122751409_122761716_122762101_122768758_122771342_122772455_122772633_122773366_122773543_122774648_122774682_122776046_122776128_122776904_122776957_122778939_122779083_122779762_122779901_122780541_122780671_122781178_122781257_122781468_122781677_122783378_122783511_122785785_122785945_122786575_122786717_122788010_122788119_122789067_122789290_122790722_122790794_122791281_122791422_122791801
ENSMUSG00000052707.9_5	chr7	+	4279	23	NIC	ENSMUSG00000052707.9	novel	8183	24	NA	NA	3	0	combination_of_known_splicesites	TRUE	canonical	3	38	junction_5	32.7131282565666	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122723406	122793201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_122723556_122723890_122723939_122742972_122743061_122751386_122751409_122761716_122762101_122772455_122772633_122773366_122773543_122774648_122774682_122776046_122776128_122776904_122776957_122778939_122779083_122779762_122779901_122780541_122780671_122781178_122781257_122781468_122781677_122783378_122783511_122785785_122785945_122786575_122786717_122788010_122788119_122789067_122789290_122790722_122790794_122791281_122791422_122791801
ENSMUSG00000052707.9_51	chr7	+	4472	19	ISM	ENSMUSG00000052707.9	ENSMUST00000094053.7	8183	24	47054	1318	-152	0	3prime_fragment	FALSE	canonical	3	73	junction_3	29.1070819942883	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122770457	122793201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_122771342_122772455_122772633_122773366_122773543_122774648_122774682_122776046_122776128_122776904_122776957_122778939_122779083_122779762_122779901_122780541_122780671_122781178_122781257_122781468_122781677_122783378_122783511_122785785_122785945_122786575_122786717_122788010_122788119_122789067_122789290_122790722_122790794_122791281_122791422_122791801
ENSMUSG00000052707.9_82	chr7	+	1521	1	ISM	ENSMUSG00000052707.9	ENSMUST00000094053.7	8183	24	68862	733	13122	576	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTAATTGTCTCTTTTT	NA	False	NA	9	True	AATAAA	-21	NA	122792265	122793786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_122792300_122793800
ENSMUSG00000052712.18_0	chr17	+	1281	9	FSM	ENSMUSG00000052712.18	ENSMUST00000064709.13	2812	9	165	1366	0	0	multi-exon	FALSE	canonical	3	208	junction_1	54.6168472176855	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATGGGTTGGTTGCTTA	476	False	NA	14	True	AATAAA	-15	NA	29487926	29520498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUSG00000052712.18_13	chr17	+	1224	8	ISM	ENSMUSG00000052712.18	ENSMUST00000149405.4	1435	9	3786	8	1179	-1	3prime_fragment	FALSE	canonical	3	287	junction_3	36.8936696079809	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGCATGGGTTGGTTGC	1188	False	NA	11	True	AATAAA	-12	NA	29496834	29520495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUSG00000052712.18_3	chr17	+	1575	9	NNC	ENSMUSG00000052712.18	novel	1694	9	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	111.000492679087	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGCATGGGTTGGTTGC	506	False	NA	11	True	AATAAA	-12	NA	29487956	29520495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_29488304_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUSG00000052712.18_4	chr17	+	1061	8	FSM	ENSMUSG00000052712.18	ENSMUST00000235114.2	1073	8	7	5	-1	-5	multi-exon	FALSE	canonical	3	42	junction_3	114.986245850075	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTTGCATGGGTTGG	475	False	NA	7	True	AATAAA	-8	NA	29487925	29520491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUSG00000052712.18_6	chr17	+	860	7	NIC	ENSMUSG00000052712.18	novel	1073	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_2	129.043920171906	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGGTTGGTTGCTTAG	476	False	NA	15	True	AATAAA	-16	NA	29487926	29520499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_29487977_29496830_29496922_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUSG00000052712.18_7	chr17	+	1174	8	FSM	ENSMUSG00000052712.18	ENSMUST00000234711.2	13859	8	137	12548	1	-5	multi-exon	FALSE	canonical	3	31	junction_1	113.402479906656	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTTGCATGGGTTGG	485	False	NA	7	True	AATAAA	-8	NA	29487935	29520491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29487977_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUSG00000052724.8_2	chr9	+	1214	1	NIC	ENSMUSG00000052724.8	novel	965	3	NA	NA	943	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTCCCACCATTCTGCT	NA	False	NA	NA	False	AATAAA	-33	NA	114610110	114611324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_114610100_114611300
ENSMUSG00000052726.17_19	chr1	+	3972	12	ISM	ENSMUSG00000052726.17	ENSMUST00000120709.8	5790	27	263382	10	-3416	-10	3prime_fragment	FALSE	canonical	2	4	junction_4	2.63165724111457	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGAAAATTCCTTGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	140437277	140539795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_140437352_140440558_140440773_140446603_140446710_140450825_140450999_140461598_140461734_140480697_140480810_140498119_140498222_140501332_140501417_140502466_140502596_140511756_140512058_140523712_140523798_140537338
ENSMUSG00000052726.17_4	chr1	+	3608	27	FSM	ENSMUSG00000052726.17	ENSMUST00000120709.8	5790	27	-24	2206	-24	79	multi-exon	FALSE	canonical	0	0	junction_1	3.00221811490562	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATCATTTTGAAACTTA	NA	False	NA	NA	False	AATAAA	-19	NA	140173871	140537599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_140174090_140278945_140279026_140282191_140282292_140290686_140290736_140293262_140293323_140302845_140302921_140304090_140304175_140310738_140310834_140352930_140353112_140354565_140354731_140356546_140356684_140359107_140359172_140377933_140378043_140411862_140411972_140435437_140435588_140437121_140437352_140440558_140440773_140446603_140446710_140450825_140450999_140461598_140461734_140480697_140480810_140498119_140498222_140501332_140501417_140502466_140502596_140511756_140512058_140523712_140523798_140537338
ENSMUSG00000052727.7_0	chr13	-	3090	1	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	91985	20	19389	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCATGTGTTGAGACATC	NA	False	NA	-20	True	AATAAA	-20	NA	99561063	99557973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_99558000_99561100
ENSMUSG00000052727.7_1	chr13	-	7678	7	FSM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	-5	4135	-5	-4135	multi-exon	FALSE	canonical	3	33	junction_5	21.4741446602394	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTGCCTACCCCCGTTC	NA	False	NA	-6	True	AATAGA	-15	NA	99653053	99562088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_99562470_99563726_99563966_99565719_99572210_99578141_99578283_99580721_99580805_99644615_99644718_99652811
ENSMUSG00000052727.7_2	chr13	-	3832	3	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	84117	4135	11521	-4135	3prime_fragment	FALSE	canonical	3	84	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTGCCTACCCCCGTTC	NA	False	NA	-6	True	AATAGA	-15	NA	99568931	99562088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_99562470_99563726_99563966_99565719
ENSMUSG00000052727.7_3	chr13	-	4525	2	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	89293	20	16697	-20	3prime_fragment	FALSE	canonical	3	84	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCATGTGTTGAGACATC	NA	False	NA	-20	True	AATAAA	-20	NA	99563755	99557973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_99562470_99563726
ENSMUSG00000052727.7_6	chr13	-	7554	5	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	72024	4135	-49	-4135	3prime_fragment	FALSE	canonical	3	46	junction_3	18.280795934532	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTGCCTACCCCCGTTC	4641	False	NA	-6	True	AATAGA	-15	NA	99581024	99562088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_99562470_99563726_99563966_99565719_99572210_99578141_99578283_99580721
ENSMUSG00000052738.15_0	chr6	+	1242	9	FSM	ENSMUSG00000052738.15	ENSMUST00000064740.9	1519	9	271	6	1	1	multi-exon	FALSE	canonical	3	1222	junction_2	134.074081667562	830	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGCTGTGAAGACTTT	2586	False	NA	13	True	AATAAA	-17	NA	73225635	73253888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_73225737_73233153_73233258_73237457_73237575_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
ENSMUSG00000052748.15_0	chr1	-	3582	20	FSM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	100	6	81	-6	multi-exon	FALSE	canonical	3	144	junction_7	20.5845328266092	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGCATTTTGCTTTTCCG	NA	False	NA	-6	True	AATAAA	-12	NA	151304106	151243455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
ENSMUSG00000052748.15_1	chr1	-	2848	18	NIC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	74	-3	combination_of_known_junctions	FALSE	canonical	3	17	junction_14	42.2765651215601	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATTTTGCTTTTCCGTTT	NA	False	NA	-3	True	AATAAA	-15	NA	151304113	151243452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151295850_151295935_151297784_151297872_151299257_151299357_151304047
ENSMUSG00000052748.15_24	chr1	-	2261	15	ISM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	17284	655	1808	10	3prime_fragment	FALSE	canonical	3	144	junction_7	19.2184010462762	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAAAAACCAAAATGTTG	NA	False	NA	NA	False	NA	NA	NA	151286922	151244104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521
ENSMUSG00000052751.17_0	chr6	+	3103	3	FSM	ENSMUSG00000052751.17	ENSMUST00000118229.2	3138	3	28	7	19	-6	multi-exon	FALSE	canonical	3	41	junction_2	5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTAGTGGCTGGTGGTG	NA	False	NA	14	True	AATAAA	-12	NA	48570852	48576009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48570987_48571724_48571911_48573226
ENSMUSG00000052751.17_1	chr6	+	3028	3	FSM	ENSMUSG00000052751.17	ENSMUST00000135151.3	3057	3	25	4	-15	-4	multi-exon	FALSE	canonical	3	22	junction_1	9.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTAGTGGCTGGTGGTGTT	NA	False	NA	16	True	AATAAA	-14	NA	48570858	48576011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48570987_48571795_48571911_48573226
ENSMUSG00000052751.17_2	chr6	+	2907	2	FSM	ENSMUSG00000052751.17	ENSMUST00000163452.7	2959	2	48	4	-9	-4	multi-exon	FALSE	canonical	3	7	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTAGTGGCTGGTGGTGTT	NA	False	NA	16	True	AATAAA	-14	NA	48570864	48576011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48570987_48573226
ENSMUSG00000052751.17_3	chr6	+	2971	2	FSM	ENSMUSG00000052751.17	ENSMUST00000150030.2	989	2	470	-2452	470	-6	multi-exon	FALSE	canonical	3	41	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTAGTGGCTGGTGGTG	NA	False	NA	14	True	AATAAA	-12	NA	48571722	48576009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48571911_48573226
ENSMUSG00000052751.17_4	chr6	+	1980	1	ISM	ENSMUSG00000052751.17	ENSMUST00000009420.15	3145	3	3213	6	2777	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTAGTGGCTGGTGGTG	NA	False	NA	14	True	AATAAA	-12	NA	48574029	48576009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_48574000_48576000
ENSMUSG00000052752.16_0	chr17	-	2646	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176668.8	2667	21	17	4	0	0	multi-exon	FALSE	canonical	3	46	junction_17	106.150647666418	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTGTGGAGACAGCTT	NA	False	NA	-11	True	AATAAA	-13	NA	24746807	24727827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735574_24737715_24737774_24738104_24738221_24746739
ENSMUSG00000052752.16_1	chr17	-	2606	21	NIC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	50	junction_12	97.3074894342671	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTGGAGACAGCTTCT	NA	False	NA	-9	True	AATAAA	-15	NA	24746811	24727825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731929_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
ENSMUSG00000052752.16_14	chr17	-	2649	21	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	46	junction_17	98.1200667549712	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTGGAGACAGCTTCT	NA	False	NA	-9	True	AATAAA	-15	NA	24746811	24727825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735571_24737715_24737774_24738104_24738221_24746739
ENSMUSG00000052752.16_17	chr17	-	2623	21	NIC	ENSMUSG00000052752.16	novel	2687	21	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	50	junction_12	105.422530798686	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTGGAGACAGCTTCT	NA	False	NA	-9	True	AATAAA	-15	NA	24746825	24727825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731929_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738104_24738221_24746739
ENSMUSG00000052752.16_19	chr17	-	2601	21	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	32	junction_19	108.442277272289	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGGTTGTGGAGACAGC	NA	False	NA	-13	True	AATAAA	-11	NA	24746806	24727829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737769_24738104_24738221_24746739
ENSMUSG00000052752.16_4	chr17	-	2636	21	NIC	ENSMUSG00000052752.16	novel	2687	21	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	43	junction_19	98.6916789805503	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTGGAGACAGCTTCT	NA	False	NA	-9	True	AATAAA	-15	NA	24746818	24727825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738087_24738221_24746739
ENSMUSG00000052752.16_5	chr17	-	2615	21	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	185	junction_18	68.0276414408143	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTGGAGACAGCTTCT	NA	False	NA	-9	True	AATAAA	-15	NA	24746811	24727825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738104_24738221_24746739
ENSMUSG00000052752.16_6	chr17	-	2610	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176652.8	3003	21	101	292	-4	0	multi-exon	FALSE	canonical	3	280	junction_18	53.1587010751768	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTGTGGAGACAGCTT	NA	False	NA	-11	True	AATAAA	-13	NA	24746811	24727827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
ENSMUSG00000052752.16_8	chr17	-	2637	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176086.8	2687	21	46	4	2	0	multi-exon	FALSE	canonical	3	43	junction_19	106.585693223809	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTGTGGAGACAGCTT	NA	False	NA	-11	True	AATAAA	-13	NA	24746818	24727827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738087_24738221_24746739
ENSMUSG00000052763.8_0	chr6	+	2640	5	FSM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	149	12	149	-12	multi-exon	FALSE	canonical	3	116	junction_4	25.1445819213603	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGCAAAATGTTCACA	NA	False	NA	12	True	AATAAA	-19	NA	47897558	47909561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907644
ENSMUSG00000052763.8_1	chr6	+	4216	4	ISM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	149	16	149	-16	intron_retention	FALSE	canonical	3	164	junction_3	6.34209919681348	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAAAAAGCAAAATGTT	NA	False	NA	8	True	AATAAA	-15	NA	47897558	47909557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983
ENSMUSG00000052763.8_10	chr6	+	1804	1	ISM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	10348	12	4518	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGCAAAATGTTCACA	NA	False	NA	12	True	AATAAA	-19	NA	47907757	47909561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_47907800_47909600
ENSMUSG00000052763.8_2	chr6	+	2635	5	NNC	ENSMUSG00000052763.8	novel	2801	5	NA	NA	151	-12	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	63.3141966702571	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGCAAAATGTTCACA	NA	False	NA	12	True	AATAAA	-19	NA	47897560	47909561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907647
ENSMUSG00000052769.8_0	chr3	+	1033	1	FSM	ENSMUSG00000052769.9	ENSMUST00000064809.7	1579	1	-21	567	-21	-567	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTAGC	NA	False	NA	NA	False	AAGAAA	-42	NA	115508777	115509810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_115508800_115509800
ENSMUSG00000052776.11_22	chr5	-	1133	6	ISM	ENSMUSG00000052776.11	ENSMUST00000080322.8	1885	7	1697	464	1697	-464	3prime_fragment	FALSE	canonical	3	208	junction_1	176.329918051362	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTGTGAACTCTGAGG	NA	False	NA	NA	False	AATAAA	-18	NA	121043887	121034782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658
ENSMUSG00000052776.11_3	chr5	-	1403	7	FSM	ENSMUSG00000052776.11	ENSMUST00000080322.8	1885	7	18	464	18	-464	multi-exon	FALSE	canonical	3	208	junction_1	161.447015732372	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTGTGAACTCTGAGG	NA	False	NA	NA	False	AATAAA	-18	NA	121045566	121034782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
ENSMUSG00000052776.11_4	chr5	-	2595	4	ISM	ENSMUSG00000052776.11	ENSMUST00000080322.8	1885	7	6340	464	6340	-464	3prime_fragment	FALSE	canonical	3	208	junction_1	206.71128550603	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTGTGAACTCTGAGG	NA	False	NA	NA	False	AATAAA	-18	NA	121039244	121034782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135
ENSMUSG00000052776.11_7	chr5	-	3967	6	NIC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	18	-464	intron_retention	FALSE	canonical	3	208	junction_1	174.069641235915	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTGTGAACTCTGAGG	NA	False	NA	NA	False	AATAAA	-18	NA	121045566	121034782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121040118_121043658_121043948_121045356
ENSMUSG00000052794.14_0	chr8	+	2399	8	FSM	ENSMUSG00000052794.14	ENSMUST00000064853.13	2887	8	21	467	21	-107	multi-exon	FALSE	canonical	3	59	junction_1	11.7334338276463	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCACATGTGTGTCTGC	NA	False	NA	-1	True	AGTAAA	-14	NA	73197744	73214378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_73197834_73198593_73199315_73203293_73203586_73205202_73205277_73208957_73209412_73211816_73211913_73212446_73212614_73213872
ENSMUSG00000052794.14_7	chr8	+	3005	8	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	-21	-107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	27.4694635654107	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCACATGTGTGTCTGC	NA	False	NA	-1	True	AGTAAA	-14	NA	73197754	73214378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_73197834_73198593_73199315_73203293_73203586_73205202_73205277_73208957_73209412_73211816_73211913_73212446_73212614_73213256
ENSMUSG00000052794.14_9	chr8	+	2143	7	ISM	ENSMUSG00000052794.14	ENSMUST00000064853.13	2887	8	1037	467	985	-107	3prime_fragment	FALSE	canonical	3	61	junction_3	11.6285090283416	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCACATGTGTGTCTGC	NA	False	NA	-1	True	AGTAAA	-14	NA	73198760	73214378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_73199315_73203293_73203586_73205202_73205277_73208957_73209412_73211816_73211913_73212446_73212614_73213872
ENSMUSG00000052798.14_0	chr10	-	3101	28	FSM	ENSMUSG00000052798.14	ENSMUST00000064848.7	3114	28	10	3	3	0	multi-exon	FALSE	canonical	3	716	junction_19	68.4831139760951	1426	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGATGAGAGTTTTCTCTT	NA	False	NA	-7	True	AATAAA	-26	NA	117628600	117586528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
ENSMUSG00000052812.6_0	chr12	+	8009	28	NIC	ENSMUSG00000052812.6	novel	8035	31	NA	NA	6	-8	combination_of_known_junctions	FALSE	canonical	3	118	junction_21	18.2748412215681	143	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGAACATGTCTTTCTT	NA	False	NA	-1	True	AATAAA	-7	NA	4967412	5097386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545_5004658_5007499_5007616_5008056_5008232_5011217_5011307_5015840_5016001_5019351_5019443_5023967_5024280_5028452_5028589_5040871_5041059_5056605_5056792_5060252_5060389_5063802_5064000_5067982_5068143_5074581_5074705_5077042_5077181_5081492_5082177_5084032_5084161_5084467_5084597_5094005
ENSMUSG00000052812.6_2	chr12	+	7994	28	NNC	ENSMUSG00000052812.6	novel	8035	31	NA	NA	6	-8	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_21	27.6289345558485	46	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGAACATGTCTTTCTT	NA	False	NA	-1	True	AATAAA	-7	NA	4967412	5097386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545_5004658_5007499_5007616_5008056_5008232_5011217_5011307_5015840_5016001_5019351_5019443_5023967_5024280_5028452_5028589_5040871_5041059_5056605_5056792_5060252_5060389_5063802_5063985_5067982_5068143_5074581_5074705_5077042_5077181_5081492_5082177_5084032_5084161_5084467_5084597_5094005
ENSMUSG00000052812.6_4	chr12	+	4043	21	NIC	ENSMUSG00000052812.6	novel	8035	31	NA	NA	5	732	combination_of_known_junctions	FALSE	canonical	3	129	junction_14	17.6790129814987	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGTTGTGTCCTGATTG	NA	False	NA	NA	False	TATAAA	-13	NA	4967411	5064775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545_5004658_5007499_5007616_5008056_5008232_5011217_5011307_5015840_5016001_5019351_5019443_5023967_5024280_5028452_5028589_5040871_5041059_5056605_5056792_5060252_5060389_5063802
ENSMUSG00000052812.6_43	chr12	+	4074	4	ISM	ENSMUSG00000052812.6	ENSMUST00000045664.7	8035	31	114337	8	49689	-8	3prime_fragment	FALSE	canonical	3	169	junction_3	5.71547606649408	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGAACATGTCTTTCTT	NA	False	NA	-1	True	AATAAA	-7	NA	5081740	5097386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_5082177_5084032_5084161_5084467_5084597_5094005
ENSMUSG00000052812.6_45	chr12	+	2519	1	ISM	ENSMUSG00000052812.6	ENSMUST00000045664.7	8035	31	127464	8	62816	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGAACATGTCTTTCTT	NA	False	NA	-1	True	AATAAA	-7	NA	5094867	5097386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_5094900_5097400
ENSMUSG00000052825.7_0	chr8	-	1314	1	FSM	ENSMUSG00000052825.7	ENSMUST00000182415.2	992	1	-86	-236	-86	236	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCGTTCATAGACTTCT	NA	False	NA	NA	False	NA	NA	NA	52650177	52648863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_52648900_52650200
ENSMUSG00000052833.10_6	chr7	-	1892	9	FSM	ENSMUSG00000052833.10	ENSMUST00000094815.5	1875	9	-20	3	1	-3	multi-exon	FALSE	canonical	3	2941	junction_6	113.453115316416	3715	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTTGCTTGTCTCCTCTG	NA	False	NA	-7	True	AATAAA	-14	NA	16121730	16060977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUSG00000052837.8_0	chr8	-	1803	1	FSM	ENSMUSG00000052837.8	ENSMUST00000064922.7	1809	1	1	5	1	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	275	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAATTTCTGTGGTCTCTT	NA	False	NA	-6	True	AGTAAA	-16	NA	85705346	85703543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85703500_85705300
ENSMUSG00000052852.9_0	chr6	+	3626	7	FSM	ENSMUSG00000052852.9	ENSMUST00000121469.2	3924	7	291	7	-18	-7	multi-exon	FALSE	canonical	3	27	junction_1	4.12310562561766	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATAGTGTAATGTTG	1566	False	NA	NA	False	AATAAA	-20	NA	71684835	71787687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_71684986_71733347_71733421_71738348_71738426_71750171_71750293_71757705_71757820_71772130_71772309_71784774
ENSMUSG00000052852.9_1	chr6	+	3712	6	ISM	ENSMUSG00000052852.9	ENSMUST00000212792.2	3339	9	-18	11923	-18	-9987	5prime_fragment	FALSE	canonical	3	27	junction_1	3.79473319220206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAACAAAAAAAAAAAAAA	1566	False	NA	NA	False	NA	NA	NA	71684835	71775307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_71684986_71733347_71733421_71738348_71738426_71750171_71750293_71757705_71757820_71772130
ENSMUSG00000052852.9_2	chr6	+	1717	1	ISM	ENSMUSG00000052852.9	ENSMUST00000121469.2	3924	7	101426	7	101090	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATAGTGTAATGTTG	NA	False	NA	NA	False	AATAAA	-20	NA	71785970	71787687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_71786000_71787700
ENSMUSG00000052889.12_0	chr7	+	3070	17	FSM	ENSMUSG00000052889.12	ENSMUST00000064989.12	2911	17	-161	2	-161	-2	multi-exon	TRUE	canonical	0	0	junction_4	2.23257138743647	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121888358	122227876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_121888741_121889735_121889768_122024181_122024265_122056437_122056550_122057266_122057396_122116051_122116209_122117267_122117403_122127698_122127796_122143855_122144003_122167356_122167531_122181652_122181745_122183620_122183684_122189267_122189407_122193825_122193907_122194188_122194297_122199912_122200054_122226878
ENSMUSG00000052906.8_2	chr8	-	1631	8	FSM	ENSMUSG00000052906.8	ENSMUST00000095349.6	2808	8	1	1176	1	-1176	multi-exon	FALSE	canonical	3	227	junction_7	19.9335631229219	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTAAGTCTGTCTTAA	4671	False	NA	-9	True	NA	NA	NA	34131994	34110789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877
ENSMUSG00000052906.8_3	chr8	-	1382	8	NNC	ENSMUSG00000052906.8	novel	2808	8	NA	NA	1	-1424	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	87.840765023991	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGAATGTGAACTGTCG	4671	False	NA	-1	True	AGTAAA	-23	NA	34131994	34111037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123530_34123656_34125316_34125388_34128507_34128631_34131877
ENSMUSG00000052909.9_0	chr13	-	180	1	ISM	ENSMUSG00000052909.9	ENSMUST00000171257.4	2904	3	10420	138	10420	-138	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATGTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67911150	67910970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67911000_67911200
ENSMUSG00000052909.9_1	chr13	-	144	1	ISM	ENSMUSG00000052909.9	ENSMUST00000171257.4	2904	3	8964	1630	8964	-1630	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTAAAAAAGACACCAAT	NA	False	NA	NA	False	NA	NA	NA	67912606	67912462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67912500_67912600
ENSMUSG00000052911.10_0	chr9	+	5599	33	FSM	ENSMUSG00000052911.10	ENSMUST00000065014.10	5629	33	29	1	5	-1	multi-exon	TRUE	canonical	3	106	junction_6	29.6719037980376	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGTTGTCTGGCCTTT	9121	False	NA	18	True	AATAAA	-15	NA	108357084	108367728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108357174_108357256_108357343_108357476_108357650_108357736_108357873_108357954_108358029_108358432_108358622_108358702_108358767_108359006_108359210_108359299_108359421_108359706_108359896_108360079_108360260_108360369_108360483_108360728_108360809_108360886_108361020_108361209_108361369_108361444_108361573_108362385_108362513_108362696_108362890_108362965_108363110_108363313_108363546_108363620_108363785_108363862_108364088_108364174_108364393_108364491_108364589_108364674_108365048_108365145_108365331_108365403_108365646_108365724_108366074_108366365_108366574_108366651_108366794_108366975_108367153_108367244_108367405_108367482
ENSMUSG00000052911.10_3	chr9	+	5589	33	NIC	ENSMUSG00000052911.10	novel	5629	33	NA	NA	10	-1	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	36.5231091228554	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGTTGTCTGGCCTTT	9126	False	NA	18	True	AATAAA	-15	NA	108357089	108367728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108357169_108357256_108357343_108357476_108357650_108357736_108357873_108357954_108358029_108358432_108358622_108358702_108358767_108359006_108359210_108359299_108359421_108359706_108359896_108360079_108360260_108360369_108360483_108360728_108360809_108360886_108361020_108361209_108361369_108361444_108361573_108362385_108362513_108362696_108362890_108362965_108363110_108363313_108363546_108363620_108363785_108363862_108364088_108364174_108364393_108364491_108364589_108364674_108365048_108365145_108365331_108365403_108365646_108365724_108366074_108366365_108366574_108366651_108366794_108366975_108367153_108367244_108367405_108367482
ENSMUSG00000052911.10_58	chr9	+	1872	9	ISM	ENSMUSG00000052911.10	ENSMUST00000065014.10	5629	33	7829	1	-132	-1	3prime_fragment	FALSE	canonical	3	152	junction_3	22.03654634919	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGTTGTCTGGCCTTT	NA	False	NA	18	True	AATAAA	-15	NA	108364884	108367728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108365048_108365145_108365331_108365403_108365646_108365724_108366074_108366365_108366574_108366651_108366794_108366975_108367153_108367244_108367405_108367482
ENSMUSG00000052911.10_61	chr9	+	1462	7	ISM	ENSMUSG00000052911.10	ENSMUST00000065014.10	5629	33	8410	1	449	-1	3prime_fragment	FALSE	canonical	3	152	junction_1	23.7866676008968	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGTTGTCTGGCCTTT	NA	False	NA	18	True	AATAAA	-15	NA	108365465	108367728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108365646_108365724_108366074_108366365_108366574_108366651_108366794_108366975_108367153_108367244_108367405_108367482
ENSMUSG00000052912.8_0	chr4	+	4932	1	FSM	ENSMUSG00000052912.8	ENSMUST00000121843.2	3123	1	-196	-1613	-102	1613	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTAGCCACTGTGAAAA	NA	False	NA	NA	False	NA	NA	NA	145190671	145195603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_145190700_145195600
ENSMUSG00000052914.5_1	chr4	-	1881	9	FSM	ENSMUSG00000052914.5	ENSMUST00000030303.6	3605	9	102	1622	102	-1622	multi-exon	FALSE	canonical	1	1	junction_1	1.40867845869808	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAATGAATTAAACATCA	NA	False	NA	NA	False	NA	NA	NA	96441796	96405996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_96406443_96411939_96412079_96414075_96414264_96417621_96417761_96419868_96420046_96423682_96423844_96424232_96424383_96433935_96434099_96441478
ENSMUSG00000052915.15_0	chr11	+	2812	9	FSM	ENSMUSG00000052915.15	ENSMUST00000037915.9	4593	9	347	1434	63	-9	multi-exon	FALSE	canonical	3	39	junction_3	7.97554857047464	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAGAAAAAAAAAAA	677	False	NA	NA	False	NA	NA	NA	98686688	98697251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98687431_98689965_98690190_98690825_98691209_98693093_98693142_98693607_98693673_98694728_98694797_98695127_98695253_98695672_98695746_98696167
ENSMUSG00000052915.15_1	chr11	+	2363	3	FSM	ENSMUSG00000052915.15	ENSMUST00000107485.8	2091	3	-285	13	-10	-13	multi-exon	FALSE	canonical	3	46	junction_1	7.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTCAAACAATAAGGAC	320	False	NA	NA	False	AATAAA	-15	NA	98686331	98691865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98687431_98689965_98690190_98690825
ENSMUSG00000052915.15_15	chr11	+	2012	8	ISM	ENSMUSG00000052915.15	ENSMUST00000037915.9	4593	9	3677	1439	539	-14	3prime_fragment	FALSE	canonical	3	39	junction_2	8.48287590817344	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGATAAAAAAGAAAAAA	4007	False	NA	NA	False	NA	NA	NA	98690018	98697246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98690190_98690825_98691209_98693093_98693142_98693607_98693673_98694728_98694797_98695127_98695253_98695672_98695746_98696167
ENSMUSG00000052915.15_3	chr11	+	3085	8	FSM	ENSMUSG00000052915.15	ENSMUST00000107487.10	2836	8	-263	14	21	-14	multi-exon	FALSE	canonical	2	4	junction_3	17.7924542593603	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGATAAAAAAGAAAAAA	351	False	NA	NA	False	NA	NA	NA	98686362	98697246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98687431_98689965_98690190_98690825_98691209_98693607_98693673_98694728_98694797_98695127_98695253_98695672_98695746_98696167
ENSMUSG00000052915.15_6	chr11	+	3421	6	ISM	ENSMUSG00000052915.15	ENSMUST00000037915.9	4593	9	6219	9	1570	-9	3prime_fragment	FALSE	canonical	3	41	junction_3	7.1386273190299	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACTTTTGAACTTTTGCC	2029	False	NA	22	True	AATAAA	-13	NA	98692560	98698676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98693142_98693607_98693673_98694728_98694797_98695127_98695253_98695672_98695746_98696167
ENSMUSG00000052915.15_7	chr11	+	2863	7	ISM	ENSMUSG00000052915.15	ENSMUST00000037915.9	4593	9	4728	173	79	-173	3prime_fragment	FALSE	canonical	3	39	junction_1	7.2953562094131	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGAAATTGCTTGTCT	538	False	NA	NA	False	AATAAA	-3	NA	98691069	98698512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98691209_98693093_98693142_98693607_98693673_98694728_98694797_98695127_98695253_98695672_98695746_98696167
ENSMUSG00000052915.15_9	chr11	+	1925	1	ISM	ENSMUSG00000052915.15	ENSMUST00000037915.9	4593	9	10412	7	1657	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTTGAACTTTTGCCTC	6222	False	NA	24	True	AATAAA	-15	NA	98696753	98698678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98696800_98698700
ENSMUSG00000052917.16_11	chr16	+	476	2	FSM	ENSMUSG00000052917.16	ENSMUST00000201476.2	1169	2	-10	703	-10	2	multi-exon	FALSE	canonical	3	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGAGTTGTTTTTGTT	NA	False	NA	NA	False	CATAAA	-15	NA	55895756	55896796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_55895942_55896505
ENSMUSG00000052917.16_13	chr16	+	4761	23	FSM	ENSMUSG00000052917.16	ENSMUST00000089360.10	4802	23	9	32	-6	-5	multi-exon	FALSE	canonical	1	1	junction_21	11.3403397561592	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCATTAAATTGTAATTT	NA	False	NA	NA	False	ATTAAA	-10	NA	55895780	56010342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55959347_55959464_55971636_55971822_55973737_55974072_55975586_55975739_55978830_55978978_55982737_55982772_55986195_55986376_55990057_55990321_55992112_55992247_55993519_55993637_55996159_55996283_55999319_55999413_55999860_55999986_56000888_56000942_56004509_56004554_56005123_56005193_56006421_56006573_56008597
ENSMUSG00000052917.16_4	chr16	+	1235	5	ISM	ENSMUSG00000052917.16	ENSMUST00000201011.2	914	6	-62	1911	-6	573	5prime_fragment	FALSE	canonical	3	20	junction_2	8.76070773396762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACAGTTTGGCACCAAT	NA	False	NA	NA	False	NA	NA	NA	55895780	55944872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141
ENSMUSG00000052917.16_5	chr16	+	4818	24	FSM	ENSMUSG00000052917.16	ENSMUST00000089362.9	4825	24	-2	9	2	-8	multi-exon	FALSE	canonical	1	1	junction_22	11.8366321271476	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAATATGAAGGACTGCT	NA	False	NA	NA	False	ATTAAA	-34	NA	55895828	56010366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55959347_55959464_55971636_55971822_55973737_55974072_55975586_55975739_55978830_55978978_55982737_55982772_55986195_55986376_55990057_55990321_55992112_55992247_55993519_55993637_55996159_55996283_55999319_55999413_55999860_55999986_56000888_56000942_56004509_56004554_56005123_56005193_56006421_56006573_56008597
ENSMUSG00000052917.16_6	chr16	+	4508	22	NIC	ENSMUSG00000052917.16	novel	4802	23	NA	NA	2	-1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_20	8.62075752573173	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAAATTGTAATTTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	55895839	56010346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_55895942_55902718_55902772_55917702_55917795_55944141_55944334_55959347_55959464_55971636_55971822_55973737_55974072_55975586_55975739_55978830_55978978_55982737_55982772_55986195_55986376_55990057_55990321_55992112_55992247_55993519_55993637_55996159_55996283_55999319_55999413_55999860_55999986_56000888_56000942_56004509_56004554_56005123_56005193_56006421_56006573_56008597
ENSMUSG00000052917.16_7	chr16	+	782	6	FSM	ENSMUSG00000052917.16	ENSMUST00000201011.2	914	6	34	98	34	-98	multi-exon	FALSE	canonical	3	14	junction_5	10.507140429251	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAATAGATAACTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	55895876	55946685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55946503
ENSMUSG00000052917.16_8	chr16	+	1010	7	FSM	ENSMUSG00000052917.16	ENSMUST00000049128.11	1130	7	0	120	0	-1	multi-exon	FALSE	canonical	3	14	junction_6	9.3407708461347	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTCCTTGCCTTGCTAGC	NA	False	NA	NA	False	ACTAAA	-16	NA	55895826	55946782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55946503
ENSMUSG00000052921.14_1	chr11	-	4236	16	NIC	ENSMUSG00000052921.14	novel	4372	17	NA	NA	5	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_15	3.51125175527032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTGGTCTAAAAACACAGT	5990	False	NA	-1	True	NA	NA	NA	68848301	68833981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_68835656_68837191_68837297_68837386_68837470_68837809_68837963_68838061_68838223_68838401_68838495_68838591_68838667_68840796_68840927_68841825_68841979_68842157_68842319_68842444_68842657_68842736_68842796_68844312_68844368_68844637_68844989_68845243_68845900_68848186
ENSMUSG00000052921.14_10	chr11	-	3487	15	FSM	ENSMUSG00000052921.14	ENSMUST00000065040.13	4123	15	633	3	633	-1	multi-exon	FALSE	canonical	2	6	junction_4	2.66496544373966	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAGTGGTCTAAAAACACA	9024	False	NA	-3	True	NA	NA	NA	68845267	68833983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_68835656_68837191_68837297_68837386_68837470_68837809_68837963_68838061_68838223_68838401_68838495_68838591_68838667_68840796_68840927_68841825_68841979_68842157_68842319_68842444_68842657_68842736_68842796_68844312_68844368_68844637_68844989_68845243
ENSMUSG00000052921.14_3	chr11	-	4350	17	FSM	ENSMUSG00000052921.14	ENSMUST00000108671.2	4372	17	17	5	17	-5	multi-exon	FALSE	canonical	2	6	junction_4	3.00974978195863	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAGCAGTGGTCTAAAAA	6002	False	NA	-7	True	NA	NA	NA	68848289	68833987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_68835656_68837191_68837297_68837386_68837470_68837809_68837963_68838061_68838223_68838401_68838495_68838591_68838667_68840796_68840927_68841825_68841979_68842157_68842319_68842444_68842657_68842736_68842796_68844312_68844368_68844637_68844989_68845243_68845900_68847671_68847804_68848186
ENSMUSG00000052921.14_6	chr11	-	3285	16	ISM	ENSMUSG00000052921.14	ENSMUST00000108671.2	4372	17	457	1013	457	357	3prime_fragment	FALSE	canonical	2	6	junction_4	2.81582827759238	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGGGCTACTTTCTT	6442	False	NA	NA	False	ATTAAA	-16	NA	68847849	68834995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_68835656_68837191_68837297_68837386_68837470_68837809_68837963_68838061_68838223_68838401_68838495_68838591_68838667_68840796_68840927_68841825_68841979_68842157_68842319_68842444_68842657_68842736_68842796_68844312_68844368_68844637_68844989_68845243_68845900_68847671
ENSMUSG00000052926.17_0	chr8	-	1125	7	FSM	ENSMUSG00000052926.17	ENSMUST00000128972.9	1141	7	11	5	11	-5	multi-exon	FALSE	canonical	3	1021	junction_4	88.9793983646402	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTGGACCGAGTGCTT	8241	False	NA	-13	True	AATAAA	-9	NA	85692682	85684300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ENSMUSG00000052926.17_3	chr8	-	1014	8	FSM	ENSMUSG00000052926.17	ENSMUST00000109738.10	2044	8	-32	1062	-2	-5	multi-exon	FALSE	canonical	3	1021	junction_5	82.5459674041917	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTGGACCGAGTGCTT	8251	False	NA	-13	True	AATAAA	-9	NA	85692672	85684300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ENSMUSG00000052926.17_4	chr8	-	1701	10	FSM	ENSMUSG00000052926.17	ENSMUST00000109736.9	2981	10	218	1062	59	-5	multi-exon	FALSE	canonical	3	62	junction_9	446.653979919331	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTGGACCGAGTGCTT	4772	False	NA	-13	True	AATAAA	-9	NA	85696151	85684300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695914
ENSMUSG00000052926.17_6	chr8	-	1912	10	NIC	ENSMUSG00000052926.17	novel	2981	10	NA	NA	36	-5	intron_retention	FALSE	canonical	3	9	junction_9	457.889387688801	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTGGACCGAGTGCTT	4749	False	NA	-13	True	AATAAA	-9	NA	85696174	85684300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695726
ENSMUSG00000052928.10_0	chr18	-	2863	1	ISM	ENSMUSG00000052928.10	ENSMUST00000165559.3	6031	12	263468	0	203187	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	75567157	75564294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_75564300_75567200
ENSMUSG00000052934.15_0	chr8	-	1754	9	FSM	ENSMUSG00000052934.15	ENSMUST00000059018.14	4358	9	28	2576	12	1983	multi-exon	FALSE	canonical	3	287	junction_2	20.0962527601541	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGAGCTGAATGACCGGT	NA	False	NA	-20	True	AATAAA	-15	NA	122305517	122278754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_122279185_122280843_122281191_122281944_122282099_122282980_122283091_122285758_122285834_122286661_122286830_122287124_122287202_122293013_122293086_122305196
ENSMUSG00000052934.15_9	chr8	-	1681	8	NIC	ENSMUSG00000052934.15	novel	4358	9	NA	NA	13	1983	combination_of_known_splicesites	FALSE	canonical	3	13	junction_7	107.929493236113	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGAGCTGAATGACCGGT	NA	False	NA	-20	True	AATAAA	-15	NA	122305516	122278754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_122279185_122280843_122281191_122281944_122282099_122282980_122283091_122285758_122285834_122286661_122286830_122287124_122287202_122305196
ENSMUSG00000052942.14_0	chr19	-	1695	1	ISM	ENSMUSG00000052942.14	ENSMUST00000162022.8	7514	11	419509	23	23338	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGCTTTTATACATGTT	NA	False	NA	NA	False	AATAAA	-29	NA	28237968	28236273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_28236300_28238000
ENSMUSG00000052942.14_1	chr19	-	7363	11	FSM	ENSMUSG00000052942.14	ENSMUST00000162022.8	7514	11	-151	302	-151	-302	multi-exon	FALSE	canonical	0	0	junction_9	5.0950956811428	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACCGGCGTTGTTTGTTTG	NA	False	NA	NA	False	AAAACA	-7	NA	28657628	28236552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_28240516_28241261_28241445_28261051_28261228_28276177_28276347_28294653_28294814_28331605_28331717_28335190_28335353_28508272_28509387_28517600_28517809_28643152_28643637_28656995
ENSMUSG00000052942.14_12	chr19	-	7439	10	FSM	ENSMUSG00000052942.14	ENSMUST00000065113.14	3382	10	-578	-3479	-167	-34	multi-exon	FALSE	canonical	0	0	junction_8	5.37024265493092	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCACATTTAATTAAAGCTT	NA	False	NA	NA	False	AATAAA	-18	NA	28657644	28236284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_28240516_28241261_28241445_28261051_28261228_28276177_28276347_28294653_28294814_28331605_28331717_28335190_28335353_28508272_28509387_28643152_28643637_28656995
ENSMUSG00000052942.14_2	chr19	-	5373	8	ISM	ENSMUSG00000052942.14	ENSMUST00000161026.2	2438	9	9389	-4110	9389	-12	3prime_fragment	FALSE	canonical	1	5	junction_1	3.81190401832181	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATGTTTTATTGGTTAT	NA	False	NA	NA	False	AATAAA	-40	NA	28508431	28236262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_28240516_28241261_28241445_28261051_28261228_28276177_28276347_28294653_28294814_28331605_28331717_28335190_28335353_28508272
ENSMUSG00000052949.15_0	chr11	-	4621	19	FSM	ENSMUSG00000052949.15	ENSMUST00000100202.10	4619	19	-30	28	-2	-28	multi-exon	FALSE	canonical	3	28	junction_1	6.47335469348423	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGGGAGCCATTAATTAC	3319	False	NA	NA	False	AATAAA	-14	NA	116303860	116227206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116229657_116235020_116235132_116236732_116236782_116237858_116237925_116238167_116238338_116238681_116238794_116240159_116240269_116240785_116241025_116245190_116245304_116245461_116245622_116246270_116246343_116249494_116249543_116249761_116249806_116250068_116250136_116250638_116250757_116251079_116251227_116253110_116253200_116287014_116287134_116303522
ENSMUSG00000052949.15_17	chr11	-	2010	11	ISM	ENSMUSG00000052949.15	ENSMUST00000100202.10	4619	19	-31	17318	-3	297	5prime_fragment	FALSE	canonical	3	32	junction_7	5.94053869611166	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGCAACTGAAAGTTGAAT	3318	False	NA	NA	False	NA	NA	NA	116303861	116244496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116245304_116245461_116245622_116246270_116246343_116249494_116249543_116249761_116249806_116250068_116250136_116250638_116250757_116251079_116251227_116253110_116253200_116287014_116287134_116303522
ENSMUSG00000052949.15_5	chr11	-	4617	20	NIC	ENSMUSG00000052949.15	novel	4619	19	NA	NA	29	-14	combination_of_known_junctions	TRUE	canonical	2	4	junction_2	11.6531117668379	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTACAACGTGAATTCGTT	3378	False	NA	NA	False	AATAAA	-28	NA	116303801	116227192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116229657_116231163_116231205_116235020_116235132_116236732_116236782_116237858_116237925_116238167_116238338_116238681_116238794_116240159_116240269_116240785_116241025_116245190_116245304_116245461_116245622_116246270_116246343_116249494_116249543_116249761_116249806_116250068_116250136_116250638_116250757_116251079_116251227_116253110_116253200_116287014_116287134_116303522
ENSMUSG00000052949.15_8	chr11	-	2819	18	ISM	ENSMUSG00000052949.15	ENSMUST00000100202.10	4619	19	-29	7193	-1	-5140	5prime_fragment	FALSE	canonical	3	29	junction_7	6.30482870916436	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACTGACTTCAGTGTGCC	3320	False	NA	NA	False	AATAAA	-15	NA	116303859	116234371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116235132_116236732_116236782_116237858_116237925_116238167_116238338_116238681_116238794_116240159_116240269_116240785_116241025_116245190_116245304_116245461_116245622_116246270_116246343_116249494_116249543_116249761_116249806_116250068_116250136_116250638_116250757_116251079_116251227_116253110_116253200_116287014_116287134_116303522
ENSMUSG00000052957.9_0	chr13	-	3101	1	FSM	ENSMUSG00000052957.9	ENSMUST00000065086.6	2961	1	-148	8	-148	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTGTCTATGGTGCAG	NA	False	NA	NA	False	ATTAAA	-25	NA	60325327	60322226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_60322200_60325300
ENSMUSG00000052962.4_1	chr6	-	738	4	FSM	ENSMUSG00000052962.4	ENSMUST00000065103.4	3721	4	40	2943	-7	223	multi-exon	FALSE	canonical	3	1437	junction_1	9.53356643071673	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGTTAAATTTATTGTG	NA	False	NA	-30	True	ATTAAA	-25	NA	71800754	71792923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_71793272_71794588_71794734_71795652_71795843_71800699
ENSMUSG00000052981.7_0	chr13	-	749	2	FSM	ENSMUSG00000052981.7	ENSMUST00000065118.7	2674	2	928	997	928	-997	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCACTTTAGAACACATG	NA	False	NA	NA	False	AATAAA	-12	NA	69887080	69851947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_69852293_69886676
ENSMUSG00000052997.16_0	chr7	-	2537	17	FSM	ENSMUSG00000052997.16	ENSMUST00000102746.11	2579	17	33	9	33	-9	multi-exon	FALSE	canonical	0	0	junction_4	386.788858543974	2055	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCTGCCTCTGTTGCCCT	NA	False	NA	-9	True	AATAAA	-18	NA	33867967	33840121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
ENSMUSG00000053004.10_1	chr6	+	2808	2	NIC	ENSMUSG00000053004.10	novel	3782	3	NA	NA	-3	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATACTGTTACAGGGCT	NA	False	NA	NA	False	AAAACA	-11	NA	114374893	114459427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_114374960_114456685
ENSMUSG00000053012.18_0	chr6	+	1659	3	FSM	ENSMUSG00000053012.18	ENSMUST00000204436.3	1687	3	26	2	2	-1	multi-exon	FALSE	canonical	3	170	junction_2	14.5	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTCTTTGTGTCAGTG	NA	False	NA	4	True	AATAAA	-16	NA	71248686	71262301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_71248825_71259134_71259302_71260947
ENSMUSG00000053024.15_1	chr1	-	5147	8	ISM	ENSMUSG00000053024.15	ENSMUST00000188065.7	4287	13	1838	2369	1838	-4	internal_fragment	FALSE	canonical	2	6	junction_3	2.91372543633873	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGGCGGCTGGAAGCAC	NA	False	NA	-14	True	AATAAA	-17	NA	132449293	132439533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_132443376_132443758_132443928_132444261_132444375_132444638_132444826_132446034_132446148_132446399_132446635_132446906_132446978_132448876
ENSMUSG00000053024.15_11	chr1	-	7107	23	FSM	ENSMUSG00000053024.15	ENSMUST00000086521.11	7177	23	68	2	-6	-2	multi-exon	FALSE	canonical	1	1	junction_16	4.01057486450529	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGCACTGCACTTCTCAC	NA	False	NA	-2	True	AATAAA	-29	NA	132470609	132439521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_132443376_132443758_132443928_132444261_132444375_132444638_132444826_132446034_132446148_132446399_132446635_132446906_132446978_132448876_132449027_132449458_132449618_132450070_132450192_132450672_132450849_132451095_132451224_132451330_132451482_132453044_132453175_132453555_132453693_132454025_132454202_132455432_132455533_132455813_132456024_132456349_132456446_132456647_132456824_132456924_132457070_132461394_132461556_132470460
ENSMUSG00000053024.15_3	chr1	-	3008	1	NIC	ENSMUSG00000053024.15	novel	2836	3	NA	NA	837	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCGGCTGGAAGCACTGC	NA	False	NA	-11	True	AATAAA	-20	NA	132442538	132439530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_132439500_132442500
ENSMUSG00000053024.15_5	chr1	-	4500	6	ISM	ENSMUSG00000053024.15	ENSMUST00000188065.7	4287	13	4658	2367	422	-2	internal_fragment	FALSE	canonical	2	6	junction_3	3.31058907144937	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCGGCTGGAAGCACTG	NA	False	NA	-12	True	AATAAA	-19	NA	132446473	132439531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_132443376_132443758_132443928_132444261_132444375_132444638_132444826_132446034_132446148_132446399
ENSMUSG00000053024.15_8	chr1	-	5955	16	ISM	ENSMUSG00000053024.15	ENSMUST00000186487.7	7334	22	16543	5	-2954	-1	3prime_fragment	FALSE	canonical	1	2	junction_13	4.05298244095218	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCACTGCACTTCTCACC	NA	False	NA	-1	True	AATAAA	-30	NA	132454085	132439520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_132443376_132443758_132443928_132444261_132444375_132444638_132444826_132446034_132446148_132446399_132446635_132446906_132446978_132448876_132449027_132449458_132449618_132450070_132450192_132450672_132450849_132451095_132451224_132451330_132451482_132453044_132453175_132453555_132453693_132454025
ENSMUSG00000053024.15_9	chr1	-	5009	9	ISM	ENSMUSG00000053024.15	ENSMUST00000188065.7	4287	13	1539	2374	1539	-9	internal_fragment	FALSE	canonical	2	6	junction_3	2.78388218141501	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCGCCTGGGCGGCTGGA	NA	False	NA	-19	True	AATAAA	-12	NA	132449592	132439538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_132443376_132443758_132443928_132444261_132444375_132444638_132444826_132446034_132446148_132446399_132446635_132446906_132446978_132448876_132449027_132449458
ENSMUSG00000053030.12_0	chr5	-	599	4	FSM	ENSMUSG00000053030.12	ENSMUST00000065216.11	631	4	26	6	-7	-1	multi-exon	FALSE	canonical	2	3	junction_1	1.63299316185545	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCAGTCCCTCGTCTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	77359292	77352959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_77353273_77354775_77354886_77357579_77357642_77359178
ENSMUSG00000053040.14_1	chr9	-	1228	6	FSM	ENSMUSG00000053040.14	ENSMUST00000169282.8	5205	6	51	3926	-27	364	multi-exon	FALSE	canonical	2	9	junction_1	3.03315017762062	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGTAGCCCTTGTCTTT	NA	False	NA	-1	True	AGTAAA	-17	NA	66741957	66726201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741767
ENSMUSG00000053040.14_2	chr9	-	3828	6	NNC	ENSMUSG00000053040.14	novel	5205	6	NA	NA	-22	-1778	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5.76194411635517	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAAAAGTACTTGTAT	NA	False	NA	NA	False	NA	NA	NA	66741952	66724053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741310
ENSMUSG00000053046.17_8	chr7	+	3248	1	NIC	ENSMUSG00000053046.17	novel	4049	19	NA	NA	-449	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGACACATGACGCAAG	NA	False	NA	NA	False	AATAAA	-9	NA	141554728	141557976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_141554700_141558000
ENSMUSG00000053062.17_0	chr16	+	1312	10	FSM	ENSMUSG00000053062.17	ENSMUST00000114195.8	4370	10	156	2902	-107	-4	multi-exon	FALSE	canonical	3	3263	junction_7	414.866630361679	2604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTGAAATGTCTGGTAA	NA	False	NA	28	True	ACTAAA	-28	NA	84571166	84619914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84615647_84615664_84618147_84618191_84619674
ENSMUSG00000053062.17_1	chr16	+	2089	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	-107	16	-107	-16	multi-exon	TRUE	canonical	3	4189	junction_2	31.1555238547945	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATTTAAAAATAATGCAG	NA	False	NA	NA	False	NA	NA	NA	84571166	84607868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
ENSMUSG00000053062.17_2	chr16	+	1417	9	NIC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-103	121	combination_of_known_splicesites	FALSE	canonical	3	40	junction_7	1349.13685369572	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGCAAGAATGGCTTATG	NA	False	NA	25	True	AATATA	-16	NA	84571170	84620039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84618147_84618191_84619674
ENSMUSG00000053062.17_89	chr16	+	2363	1	ISM	ENSMUSG00000053062.17	ENSMUST00000114195.8	4370	10	49441	2	14157	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCATTTATGGTCTATGA	NA	False	NA	15	True	AATAAA	-18	NA	84620451	84622814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_84620500_84622800
ENSMUSG00000053070.6_2	chr9	-	1799	7	FSM	ENSMUSG00000053070.6	ENSMUST00000065291.2	1592	7	-8	-199	-8	199	multi-exon	FALSE	canonical	2	5	junction_1	2.38047614284762	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAACTGTAAATTCTT	1	True	NA	NA	False	NA	NA	NA	8042832	8021473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_8022546_8023900_8023968_8025962_8026136_8027101_8027269_8037460_8037537_8042409_8042492_8042670
ENSMUSG00000053080.11_1	chr19	+	4985	5	FSM	ENSMUSG00000053080.11	ENSMUST00000159348.3	4989	5	-4	8	-4	-8	multi-exon	FALSE	canonical	3	16	junction_1	19.3713706278105	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGACAGTCACTGTGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	7394985	7403261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_7395283_7397431_7397927_7398619_7399010_7399278_7399828_7400007
ENSMUSG00000053080.11_11	chr19	+	4329	2	ISM	ENSMUSG00000053080.11	ENSMUST00000160561.3	4064	3	280	-365	280	1	intron_retention	FALSE	canonical	3	69	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGTTTTTTATTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	7398672	7403270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_7399010_7399278
ENSMUSG00000053080.11_12	chr19	+	2656	1	ISM	ENSMUSG00000053080.11	ENSMUST00000159348.3	4989	5	5619	5	2216	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAGTCACTGTGTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	7400608	7403264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_7400600_7403300
ENSMUSG00000053080.11_13	chr19	+	4151	3	FSM	ENSMUSG00000053080.11	ENSMUST00000160561.3	4064	3	272	-359	272	-5	multi-exon	FALSE	canonical	3	42	junction_2	13.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAGTCACTGTGTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	7398664	7403264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_7399010_7399278_7399828_7400007
ENSMUSG00000053080.11_14	chr19	+	3521	2	ISM	ENSMUSG00000053080.11	ENSMUST00000160561.3	4064	3	1168	-356	1168	-8	3prime_fragment	FALSE	canonical	3	42	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGACAGTCACTGTGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	7399560	7403261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_7399828_7400007
ENSMUSG00000053080.11_3	chr19	+	4585	4	NIC	ENSMUSG00000053080.11	novel	4989	5	NA	NA	-1	-15	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	17.3076733143296	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACTGATGAGACAGTCAC	NA	False	NA	NA	False	AATAAA	-5	NA	7394988	7403254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_7395283_7397431_7397927_7399278_7399828_7400007
ENSMUSG00000053080.11_5	chr19	+	4049	3	NIC	ENSMUSG00000053080.11	novel	4989	5	NA	NA	-5	-6	combination_of_known_junctions	FALSE	canonical	1	3	junction_2	6.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACAGTCACTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	7394984	7403263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_7395283_7397431_7397927_7400007
ENSMUSG00000053080.11_6	chr19	+	5162	4	ISM	ENSMUSG00000053080.11	ENSMUST00000159348.3	4989	5	2	5	2	-5	intron_retention	FALSE	canonical	3	16	junction_1	22.3059533657621	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAGTCACTGTGTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	7394991	7403264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_7395283_7397431_7397927_7398619_7399010_7399278
ENSMUSG00000053091.17_11	chr7	+	2641	8	FSM	ENSMUSG00000053091.17	ENSMUST00000077967.13	2647	8	6	0	6	0	multi-exon	FALSE	canonical	3	24	junction_5	18.4113984215413	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGCGTGTCTGGGTCT	NA	False	NA	11	True	AATAAA	-17	NA	66339711	66364492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66359184_66359906_66360495_66361620_66361793_66363548
ENSMUSG00000053091.17_13	chr7	+	2514	7	NIC	ENSMUSG00000053091.17	novel	2647	8	NA	NA	-4	-6	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	16.3647656737136	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGCAAACATGCGTGTCT	NA	False	NA	5	True	AATAAA	-11	NA	66339701	66364486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_66339772_66357787_66358302_66358386_66358477_66359041_66359184_66359906_66360495_66361620_66361793_66363548
ENSMUSG00000053091.17_16	chr7	+	1422	3	NNC	ENSMUSG00000053091.17	novel	1419	5	NA	NA	6	-673	intron_retention	FALSE	non_canonical	0	0	junction_2	43	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGTGTGATAGTTTTTT	NA	False	NA	NA	False	AGTAAA	-12	NA	66339711	66358977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_66339772_66345923_66346077_66357768
ENSMUSG00000053091.17_2	chr7	+	2576	8	FSM	ENSMUSG00000053091.17	ENSMUST00000130161.9	5088	8	0	2512	0	0	multi-exon	FALSE	canonical	3	20	junction_5	19.3454102556442	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGCGTGTCTGGGTCT	NA	False	NA	11	True	AATAAA	-17	NA	66339705	66364492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66359184_66359977_66360495_66361620_66361793_66363548
ENSMUSG00000053091.17_31	chr7	+	483	1	ISM	ENSMUSG00000053091.17	ENSMUST00000130161.9	5088	8	24308	2508	4120	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCGTGTCTGGGTCTTTGC	NA	False	NA	15	True	AATAAA	-21	NA	66364013	66364496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_66364000_66364500
ENSMUSG00000053091.17_37	chr7	+	2733	7	NIC	ENSMUSG00000053091.17	novel	2647	8	NA	NA	6	4	intron_retention	FALSE	canonical	3	24	junction_4	19.4736288919714	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTCTGGGTCTTTGCCTT	NA	False	NA	18	True	AATAAA	-24	NA	66339711	66364499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_66339772_66345923_66346055_66357787_66358477_66359041_66359184_66359906_66360495_66361620_66361793_66363548
ENSMUSG00000053091.17_4	chr7	+	3939	6	NIC	ENSMUSG00000053091.17	novel	2647	8	NA	NA	-4	0	intron_retention	FALSE	canonical	3	44	junction_3	15.357083056362	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGCGTGTCTGGGTCT	NA	False	NA	11	True	AATAAA	-17	NA	66339701	66364492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66360495_66361620_66361793_66363548
ENSMUSG00000053091.17_6	chr7	+	1420	3	ISM	ENSMUSG00000053091.17	ENSMUST00000128486.8	1419	5	-25	674	24	-674	intron_retention	FALSE	canonical	3	70	junction_2	8	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTGTGTGATAGTTTTT	NA	False	NA	NA	False	AGTAAA	-11	NA	66339671	66358976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_66339772_66345923_66346055_66357787
ENSMUSG00000053091.17_9	chr7	+	3364	7	NIC	ENSMUSG00000053091.17	novel	2647	8	NA	NA	6	0	intron_retention	FALSE	canonical	3	44	junction_3	15.1767365837763	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGCGTGTCTGGGTCT	NA	False	NA	11	True	AATAAA	-17	NA	66339711	66364492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66360495_66361620_66361793_66363548
ENSMUSG00000053094.16_1	chr5	+	3541	7	FSM	ENSMUSG00000053094.16	ENSMUST00000111298.6	3570	7	23	6	23	-6	multi-exon	FALSE	canonical	3	519	junction_4	20.4042479237372	850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTACTTGGTTTGCCGTTT	9040	False	NA	8	True	AATAAA	-9	NA	130251198	130272501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_130251414_130258289_130258468_130260595_130260882_130265643_130265795_130267087_130267272_130269188_130269333_130270118
ENSMUSG00000053094.16_36	chr5	+	1760	1	ISM	ENSMUSG00000053094.16	ENSMUST00000065329.13	3607	7	22157	105	19566	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTACTTGGTTTGCCGTTT	NA	False	NA	8	True	AATAAA	-9	NA	130270741	130272501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_130270700_130272500
ENSMUSG00000053101.4_0	chr13	-	3132	2	ISM	ENSMUSG00000053101.4	ENSMUST00000065335.3	3433	5	69052	0	69022	0	3prime_fragment	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGTCTGGTCTTTTTAT	NA	False	NA	NA	False	AATAAA	-13	NA	19939375	19933851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_19936788_19939179
ENSMUSG00000053110.14_1	chr9	-	4117	8	FSM	ENSMUSG00000053110.14	ENSMUST00000086580.12	4115	8	-7	5	1	-5	multi-exon	FALSE	canonical	3	104	junction_1	48.6117479712088	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGTCAACTTTTTT	8	True	NA	-11	True	AATAAA	-17	NA	8004596	7932004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_7934734_7936515_7936629_7938408_7938540_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
ENSMUSG00000053110.14_2	chr9	-	4167	9	FSM	ENSMUSG00000053110.14	ENSMUST00000065353.13	4171	9	-1	5	-1	-5	multi-exon	FALSE	canonical	3	70	junction_4	65.3241915372858	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGTCAACTTTTTT	6	True	NA	-11	True	AATAAA	-17	NA	8004598	7932004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_7934734_7936515_7936629_7938408_7938540_7950492_7950541_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
ENSMUSG00000053110.14_3	chr9	-	1813	1	ISM	ENSMUSG00000053110.14	ENSMUST00000086580.12	4115	8	70773	4	32006	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTGTCAACTTTTTTA	NA	False	NA	-10	True	AATAAA	-18	NA	7933816	7932003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_7932000_7933800
ENSMUSG00000053111.14_0	chr7	+	1299	11	NIC	ENSMUSG00000053111.14	novel	515	5	NA	NA	-27	-2	combination_of_known_junctions	FALSE	canonical	1	4	junction_8	2.00249843945008	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCATGTTCATATGTGGTC	NA	False	NA	NA	False	AATACA	-12	NA	133391186	133482566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_133391287_133454894_133455073_133463831_133463957_133469846_133469929_133471006_133471082_133471750_133471817_133478476_133478643_133481607_133481752_133482000_133482079_133482172_133482218_133482326
ENSMUSG00000053111.14_1	chr7	+	1297	11	FSM	ENSMUSG00000053111.14	ENSMUST00000065359.12	2004	11	22	685	-8	8	multi-exon	FALSE	canonical	1	2	junction_1	2.56904651573303	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGGTCTCATCACTGG	NA	False	NA	NA	False	AATACA	-22	NA	133378611	133482576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_133378700_133454894_133455073_133463831_133463957_133469846_133469929_133471006_133471082_133471750_133471817_133478476_133478643_133481607_133481752_133482000_133482079_133482172_133482218_133482326
ENSMUSG00000053113.4_0	chr11	-	2534	2	FSM	ENSMUSG00000053113.4	ENSMUST00000054002.4	2552	2	4	14	4	-14	multi-exon	FALSE	canonical	3	1319	junction_1	0	2464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGAAAAAAAAAAGTGACT	NA	False	NA	NA	False	AATAAA	-16	NA	117860008	117856918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_117859145_117859700
ENSMUSG00000053113.4_1	chr11	-	1689	1	ISM	ENSMUSG00000053113.4	ENSMUST00000054002.4	2552	2	1407	12	1407	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAAAAAAGTGACTTG	NA	False	NA	NA	False	AATAAA	-18	NA	117858605	117856916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_117856900_117858600
ENSMUSG00000053119.12_1	chr6	+	2524	6	FSM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	125	5	5	-5	multi-exon	FALSE	canonical	3	336	junction_5	32.5490399243972	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTTTGTATATTATGC	NA	False	NA	18	True	NA	NA	NA	71520905	71558558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
ENSMUSG00000053119.12_10	chr6	+	2498	6	NIC	ENSMUSG00000053119.12	novel	347	4	NA	NA	7	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	151.398282685108	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTTTGTATATTATGC	NA	False	NA	18	True	NA	NA	NA	71521343	71558558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_71521430_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
ENSMUSG00000053119.12_14	chr6	+	1403	1	ISM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	36375	5	2583	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTTTGTATATTATGC	NA	False	NA	18	True	NA	NA	NA	71557155	71558558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_71557200_71558600
ENSMUSG00000053128.16_0	chr9	-	2716	1	FSM	ENSMUSG00000053128.16	ENSMUST00000056328.6	2724	1	5	3	5	1	mono-exon	FALSE	NA	NA	NA	NA	NA	639	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTGGTCCTTGGGAGT	9267	False	NA	NA	False	AATAAA	-17	NA	44024796	44022080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44022100_44024800
ENSMUSG00000053134.14_0	chr5	-	2627	5	FSM	ENSMUSG00000053134.14	ENSMUST00000065388.11	2693	5	52	14	10	-8	multi-exon	FALSE	canonical	3	72	junction_3	3.34477204006491	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTCATCTGAGTTATT	NA	False	NA	-9	True	AATAAA	-11	NA	31684065	31671921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31673271_31675610_31675849_31677426_31677752_31679997_31680606_31683958
ENSMUSG00000053134.14_1	chr5	-	1102	1	ISM	ENSMUSG00000053134.14	ENSMUST00000065388.11	2693	5	11094	14	9589	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTCATCTGAGTTATT	NA	False	NA	-9	True	AATAAA	-11	NA	31673023	31671921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_31671900_31673000
ENSMUSG00000053137.8_0	chr15	-	2164	10	ISM	ENSMUSG00000053137.8	ENSMUST00000088823.5	2461	12	3043	-8	201	7	3prime_fragment	FALSE	canonical	2	7	junction_8	6.23213496105785	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGATCCCATTGCTTCTA	NA	False	NA	-5	True	AATAAA	-36	NA	89030788	89026681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89028021_89028343_89028518_89028595_89028675_89029298_89029379_89029577_89029650_89030004_89030120_89030205_89030254_89030341_89030372_89030474_89030587_89030673
ENSMUSG00000053137.8_1	chr15	-	2432	12	FSM	ENSMUSG00000053137.8	ENSMUST00000088823.5	2461	12	29	0	29	0	multi-exon	FALSE	canonical	2	7	junction_8	5.74096487412616	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGGCTCTGGATCCCAT	NA	False	NA	-13	True	AATAAA	-28	NA	89033802	89026689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89028021_89028343_89028518_89028595_89028675_89029298_89029379_89029577_89029650_89030004_89030120_89030205_89030254_89030341_89030372_89030474_89030587_89030673_89030733_89030911_89031042_89033600
ENSMUSG00000053137.8_2	chr15	-	2610	11	NIC	ENSMUSG00000053137.8	novel	2461	12	NA	NA	51	0	intron_retention	FALSE	canonical	2	7	junction_7	5.91692487699481	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCTCTGGATCCCATT	NA	False	NA	-12	True	AATAAA	-29	NA	89033780	89026688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89028021_89028343_89028518_89028595_89028675_89029298_89029650_89030004_89030120_89030205_89030254_89030341_89030372_89030474_89030587_89030673_89030733_89030911_89031042_89033600
ENSMUSG00000053153.15_1	chr1	+	2352	5	ISM	ENSMUSG00000053153.15	ENSMUST00000113940.4	3559	11	-11	65821	-7	-13339	5prime_fragment	FALSE	canonical	2	3	junction_3	2.34520787991171	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGAAATGTTTCTTTG	NA	False	NA	NA	False	ATTAAA	-12	NA	69866139	69899580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_69866281_69882127_69882175_69883437_69883534_69892481_69892601_69897631
ENSMUSG00000053158.11_3	chr7	-	676	4	ISM	ENSMUSG00000053158.11	ENSMUST00000206728.2	2707	18	7728	-12	-61	2	3prime_fragment	FALSE	canonical	2	10	junction_1	2.82842712474619	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGATATTGACATGTGTG	NA	False	NA	-7	True	AATAAA	-17	NA	80029439	80027508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358
ENSMUSG00000053158.11_5	chr7	-	1607	11	ISM	ENSMUSG00000053158.11	ENSMUST00000080932.8	2762	19	5226	0	-2284	0	3prime_fragment	FALSE	canonical	2	3	junction_5	4.68614980554399	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATTGACATGTGTGCTC	NA	False	NA	-4	True	AATAAA	-20	NA	80032468	80027505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358_80029483_80029565_80029661_80029956_80030076_80030586_80030641_80030912_80031036_80031348_80031559_80032060_80032145_80032268
ENSMUSG00000053158.11_7	chr7	-	935	5	ISM	ENSMUSG00000053158.11	ENSMUST00000206728.2	2707	18	7386	-12	-403	2	3prime_fragment	FALSE	canonical	2	10	junction_1	2.77263412660235	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGATATTGACATGTGTG	NA	False	NA	-7	True	AATAAA	-17	NA	80029781	80027508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358_80029483_80029565
ENSMUSG00000053158.11_8	chr7	-	2005	15	ISM	ENSMUSG00000053158.11	ENSMUST00000080932.8	2762	19	4077	6	-3433	0	3prime_fragment	FALSE	canonical	1	2	junction_11	4.94923205752	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGGGTGATATTGACATGT	NA	False	NA	-10	True	AATAAA	-14	NA	80033617	80027511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358_80029483_80029565_80029661_80029956_80030076_80030586_80030641_80030912_80031036_80031348_80031559_80032060_80032145_80032268_80032456_80032558_80032682_80032817_80032938_80033016_80033155_80033581
ENSMUSG00000053166.15_0	chr2	-	1975	5	ISM	ENSMUSG00000053166.15	ENSMUST00000138643.2	2521	11	45978	-818	45978	-2	3prime_fragment	FALSE	canonical	3	18	junction_2	1.92028643696715	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGTTATCCTTGTGGTTA	NA	False	NA	-7	True	NA	NA	NA	164977401	164953428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_164954614_164958059_164958312_164965435_164965554_164965641_164965764_164977103
ENSMUSG00000053166.15_1	chr2	-	2295	7	ISM	ENSMUSG00000053166.15	ENSMUST00000065438.13	3702	12	90985	2	37591	-2	3prime_fragment	FALSE	canonical	2	10	junction_5	5.30461015427985	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGTTATCCTTGTGGTTA	NA	False	NA	-7	True	NA	NA	NA	164985788	164953428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_164954614_164958059_164958312_164965435_164965554_164965641_164965764_164977103_164977241_164983973_164984228_164985561
ENSMUSG00000053166.15_2	chr2	-	1978	6	ISM	ENSMUSG00000053166.15	ENSMUST00000138643.2	2521	11	39180	-818	39180	-2	3prime_fragment	FALSE	canonical	1	4	junction_5	6.91664658631623	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGTTATCCTTGTGGTTA	NA	False	NA	-7	True	NA	NA	NA	164984199	164953428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_164954614_164958059_164958312_164965435_164965554_164965641_164965764_164977103_164977241_164984035
ENSMUSG00000053166.15_3	chr2	-	2061	6	ISM	ENSMUSG00000053166.15	ENSMUST00000065438.13	3702	12	92551	4	39157	-4	3prime_fragment	FALSE	canonical	2	10	junction_5	4.63033476111609	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACCGTTATCCTTGTGGT	NA	False	NA	-9	True	NA	NA	NA	164984222	164953430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_164954614_164958059_164958312_164965435_164965554_164965641_164965764_164977103_164977241_164983973
ENSMUSG00000053173.13_0	chr6	+	609	1	FSM	ENSMUSG00000053173.13	ENSMUST00000118863.2	567	1	-13	-29	-13	29	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCATTGGAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128290306	128290915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_128290300_128290900
ENSMUSG00000053175.18_0	chr7	-	1838	9	FSM	ENSMUSG00000053175.18	ENSMUST00000120537.8	1850	9	9	3	9	-3	multi-exon	TRUE	canonical	3	615	junction_1	42.6314144733669	784	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCCCTTGCTTTCCATCT	5738	False	NA	-11	True	AATAAA	-14	NA	19556686	19542389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19542982_19543066_19543185_19543420_19543589_19544981_19545060_19545244_19545334_19545419_19545625_19546329_19546439_19553971_19554126_19556361
ENSMUSG00000053178.6_0	chr5	+	1349	2	FSM	ENSMUSG00000053178.6	ENSMUST00000177258.2	1368	2	13	6	13	-6	multi-exon	FALSE	canonical	3	119	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTACATTTATTTTGTA	NA	False	NA	NA	False	AATAAA	-16	NA	4242379	4247645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_4242419_4246335
ENSMUSG00000053178.6_3	chr5	+	1306	1	NIC	ENSMUSG00000053178.6	novel	1368	2	NA	NA	3968	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAAGATTACATTTATT	NA	False	NA	NA	False	AATAAA	-11	NA	4246334	4247640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_4246300_4247600
ENSMUSG00000053192.10_0	chr3	-	1900	2	FSM	ENSMUSG00000053192.10	ENSMUST00000065482.6	1923	2	20	3	20	-3	multi-exon	FALSE	canonical	3	62	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTCTGGGGCTTAGTTTT	6400	False	NA	-3	True	AATAAA	-13	NA	95135968	95126448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95127775_95135394
ENSMUSG00000053198.15_0	chr7	+	4662	7	FSM	ENSMUSG00000053198.15	ENSMUST00000098644.9	4841	7	-1	180	-1	0	multi-exon	FALSE	canonical	2	4	junction_1	15.3124858276578	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTCATGTGTCTTG	1760	False	NA	NA	False	AATAAA	-8	NA	27198747	27219459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27198791_27203957_27204002_27204089_27204189_27204304_27204432_27207371_27207529_27214675_27214873_27215464
ENSMUSG00000053198.15_2	chr7	+	4466	3	FSM	ENSMUSG00000053198.15	ENSMUST00000065487.7	4497	3	24	7	24	0	multi-exon	FALSE	canonical	3	33	junction_2	5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTCATGTGTCTTG	NA	False	NA	NA	False	AATAAA	-8	NA	27207254	27219459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27207529_27214675_27214873_27215464
ENSMUSG00000053198.15_3	chr7	+	5064	2	ISM	ENSMUSG00000053198.15	ENSMUST00000065487.7	4497	3	18	7	18	0	intron_retention	FALSE	canonical	3	43	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTCATGTGTCTTG	NA	False	NA	NA	False	AATAAA	-8	NA	27207248	27219459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27207529_27214675
ENSMUSG00000053198.15_4	chr7	+	4201	2	ISM	ENSMUSG00000053198.15	ENSMUST00000065487.7	4497	3	7443	0	7443	0	3prime_fragment	FALSE	canonical	3	33	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATGTGTCTTGGTTCTCG	NA	False	NA	NA	False	AATAAA	-15	NA	27214673	27219466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27214873_27215464
ENSMUSG00000053198.15_5	chr7	+	2938	1	ISM	ENSMUSG00000053198.15	ENSMUST00000098644.9	4841	7	17779	174	9297	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATGTGTCTTGGTTCTC	NA	False	NA	NA	False	AATAAA	-14	NA	27216527	27219465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27216500_27219500
ENSMUSG00000053199.14_3	chr9	+	6364	15	FSM	ENSMUSG00000053199.14	ENSMUST00000065496.12	7161	15	-15	812	0	-812	multi-exon	FALSE	canonical	1	1	junction_3	2.39578711874977	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGTCCCACAGAGAAATA	NA	False	NA	NA	False	AATAAA	-17	NA	51676636	51764344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_51676912_51697035_51697119_51727976_51728142_51732462_51732613_51736192_51736235_51737138_51737224_51738135_51738214_51740629_51740697_51742938_51743128_51750097_51750277_51751693_51751856_51754965_51755076_51757424_51757615_51758606_51758719_51759867
ENSMUSG00000053199.14_5	chr9	+	2563	10	ISM	ENSMUSG00000053199.14	ENSMUST00000065496.12	7161	15	-8	13623	-1	-8416	5prime_fragment	FALSE	canonical	1	1	junction_3	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATGCCATTTGA	NA	False	NA	NA	False	AATAAA	-20	NA	51676643	51751533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_51676912_51697035_51697119_51727976_51728142_51732462_51732613_51736192_51736235_51737138_51737224_51738135_51738214_51740629_51740697_51742938_51743128_51750097
ENSMUSG00000053205.10_0	chr14	+	4184	11	FSM	ENSMUSG00000053205.10	ENSMUST00000226873.2	12974	11	131	8659	2	-35	multi-exon	FALSE	canonical	3	78	junction_6	62.4791165110391	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTGGTGGTTGTATTAAA	NA	False	NA	-40	True	ATTAAA	-13	NA	45588680	45614305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_45588987_45592402_45592436_45594169_45594224_45596715_45596814_45604055_45604117_45605138_45605176_45605763_45605804_45605877_45605929_45608475_45608549_45609841_45609936_45610968
ENSMUSG00000053205.10_25	chr14	+	2891	1	ISM	ENSMUSG00000053205.10	ENSMUST00000226873.2	12974	11	22865	8659	2451	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTGGTGGTTGTATTAAA	NA	False	NA	-40	True	ATTAAA	-13	NA	45611414	45614305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_45611400_45614300
ENSMUSG00000053205.10_4	chr14	+	4089	10	NIC	ENSMUSG00000053205.10	novel	12974	11	NA	NA	2	-36	combination_of_known_splicesites	FALSE	canonical	2	4	junction_9	63.4402606131679	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTGGTGGTTGTATTAA	NA	False	NA	-41	True	ATTAAA	-12	NA	45588680	45614304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_45588987_45592402_45592436_45594169_45594224_45596715_45596814_45604055_45604117_45605138_45605176_45605763_45605804_45605877_45605929_45608475_45608549_45610968
ENSMUSG00000053216.16_1	chr13	-	2825	8	FSM	ENSMUSG00000053216.16	ENSMUST00000110433.10	2370	8	11	-466	1	466	multi-exon	TRUE	canonical	1	1	junction_2	2.18529407725405	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCCTGGCTTCACTCTATC	NA	False	NA	NA	False	NA	NA	NA	23673016	23661379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23663012_23664619_23664647_23664736_23664758_23665941_23666116_23666888_23667171_23670298_23670647_23672002_23672133_23672805
ENSMUSG00000053216.16_10	chr13	-	2891	8	FSM	ENSMUSG00000053216.16	ENSMUST00000110432.2	2089	8	18	-820	1	608	multi-exon	TRUE	canonical	0	0	junction_7	2.44948974278318	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCTAACTATAGTTTCAT	NA	False	NA	NA	False	ATTAAA	-8	NA	23672999	23661237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23663012_23664619_23664647_23664736_23664758_23665941_23666116_23666888_23667171_23670298_23670647_23672002_23672133_23672864
ENSMUSG00000053219.16_1	chr10	+	1427	9	FSM	ENSMUSG00000053219.16	ENSMUST00000181645.8	1579	9	13	139	13	-136	multi-exon	FALSE	canonical	3	14	junction_1	39.8708853676464	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGAAAACACATTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	22034480	22059677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_22034618_22047902_22048001_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ENSMUSG00000053219.16_11	chr10	+	1117	6	ISM	ENSMUSG00000053219.16	ENSMUST00000065527.11	1274	7	354	142	-44	-142	3prime_fragment	FALSE	canonical	3	97	junction_3	3.6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAATCAAAAAGGAAAACAC	NA	False	NA	NA	False	AATAAA	-13	NA	22049773	22059671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ENSMUSG00000053219.16_3	chr10	+	1265	7	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	1	-142	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	36.5957647822805	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAATCAAAAAGGAAAACAC	NA	False	NA	NA	False	AATAAA	-13	NA	22034468	22059671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_22034618_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ENSMUSG00000053219.16_4	chr10	+	1460	8	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	8	-10	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	37.3625371685793	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTAAATTTAAGGTATGT	NA	False	NA	-8	True	AATAAA	-2	NA	22034475	22059803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_22034618_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ENSMUSG00000053219.16_7	chr10	+	1292	7	FSM	ENSMUSG00000053219.16	ENSMUST00000065527.11	1274	7	-23	5	-23	-5	multi-exon	FALSE	canonical	3	64	junction_1	14.8286509463568	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTAAGGTATGTGCTCC	NA	False	NA	-3	True	AATAAA	-7	NA	22049396	22059808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_22049436_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ENSMUSG00000053226.8_0	chr8	-	1213	2	FSM	ENSMUSG00000053226.8	ENSMUST00000238279.2	1369	2	156	0	156	0	multi-exon	FALSE	canonical	3	24	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGCGTGCTTCTTTCT	555	False	NA	0	True	CATAAA	-15	NA	85558882	85542033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85543163_85558798
ENSMUSG00000053253.17_0	chr14	+	1924	8	FSM	ENSMUSG00000053253.17	ENSMUST00000181969.8	2532	8	179	429	-1	0	multi-exon	TRUE	canonical	3	271	junction_7	54.1807255433901	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTGCCTCGTTTAGTGA	NA	False	NA	4	True	AATAAA	-14	NA	105496186	105546303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545319
ENSMUSG00000053253.17_1	chr14	+	1694	8	FSM	ENSMUSG00000053253.17	ENSMUST00000138283.2	1695	8	-1	2	-1	0	multi-exon	FALSE	canonical	3	137	junction_7	99.9552961302691	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTGCCTCGTTTAGTGA	NA	False	NA	4	True	AATAAA	-14	NA	105496186	105546303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545549
ENSMUSG00000053286.12_0	chr1	+	2629	15	FSM	ENSMUSG00000053286.12	ENSMUST00000065625.12	2749	15	116	4	-9	-4	multi-exon	FALSE	canonical	3	148	junction_10	24.5323609686038	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTTCTGACTGGGCTC	NA	False	NA	11	True	AATAAA	-12	NA	151304408	151333908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
ENSMUSG00000053286.12_1	chr1	+	2457	15	NIC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	-9	-4	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	47.2939138337512	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTTCTGACTGGGCTC	NA	False	NA	11	True	AATAAA	-12	NA	151304408	151333908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
ENSMUSG00000053289.9_1	chr9	-	3158	18	FSM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	-36	6	-36	-6	multi-exon	FALSE	canonical	3	249	junction_8	33.3641956320396	701	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATACTATTGTTTTTA	NA	False	NA	-9	True	AATAAA	-11	NA	53159389	53009940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53071197_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
ENSMUSG00000053291.16_0	chr7	-	3044	11	Fusion	ENSMUSG00000093348.3_ENSMUSG00000058709.12_ENSMUSG00000053291.16	novel	2107	6	NA	NA	-2	0	intron_retention	FALSE	canonical	2	7	junction_5	209.967140286284	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTTGTATTCCTCTCT	NA	False	NA	-4	True	AATAAA	-19	NA	26878303	26858083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875664_26878151
ENSMUSG00000053291.16_1	chr7	-	2779	12	Fusion	ENSMUSG00000058709.12_ENSMUSG00000053291.16	novel	2107	6	NA	NA	-1	0	multi-exon	FALSE	canonical	2	7	junction_5	201.262995576509	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTTGTATTCCTCTCT	NA	False	NA	-4	True	AATAAA	-19	NA	26878302	26858083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
ENSMUSG00000053291.16_11	chr7	-	1087	7	NIC	ENSMUSG00000053291.16	novel	1192	8	NA	NA	-3	-4	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	262.193312907353	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTGTTTCGGCCTCTGT	NA	False	NA	-8	True	CATAAA	-12	NA	26878304	26867855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26878151
ENSMUSG00000053291.16_6	chr7	-	1170	8	FSM	ENSMUSG00000053291.16	ENSMUST00000093040.13	1192	8	20	2	0	0	multi-exon	FALSE	canonical	3	670	junction_1	28.7402157263998	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCGGCCTCTGTCATTC	NA	False	NA	-3	True	CATAAA	-17	NA	26878301	26867850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
ENSMUSG00000053291.16_7	chr7	-	1433	7	FSM	ENSMUSG00000053291.16	ENSMUST00000134462.8	1372	7	-60	-1	1	0	multi-exon	FALSE	canonical	3	670	junction_1	25.5451669705946	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCGGCCTCTGTCATTC	NA	False	NA	-3	True	CATAAA	-17	NA	26878300	26867850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875664_26878151
ENSMUSG00000053293.10_1	chr5	-	5548	13	FSM	ENSMUSG00000053293.10	ENSMUST00000111171.6	5580	13	28	4	28	-4	multi-exon	FALSE	canonical	3	173	junction_6	20.4224481610038	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGATGTGAGTTTGCCCTT	NA	False	NA	-9	True	AATAAA	-14	NA	135423372	135404998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135407029_135407488_135407612_135409773_135411391_135411924_135412099_135412480_135412584_135412692_135412818_135412946_135413021_135413706_135413799_135415677_135415850_135417490_135417572_135420475_135420635_135421163_135421380_135422790
ENSMUSG00000053293.10_10	chr5	-	1462	1	ISM	ENSMUSG00000053293.10	ENSMUST00000111171.6	5580	13	16940	4	16940	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGATGTGAGTTTGCCCTT	NA	False	NA	-9	True	AATAAA	-14	NA	135406460	135404998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_135405000_135406500
ENSMUSG00000053293.10_13	chr5	-	2897	3	ISM	ENSMUSG00000053293.10	ENSMUST00000111171.6	5580	13	12883	4	12883	-4	3prime_fragment	FALSE	canonical	3	219	junction_1	1	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGATGTGAGTTTGCCCTT	NA	False	NA	-9	True	AATAAA	-14	NA	135410517	135404998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_135407029_135407488_135407612_135409773
ENSMUSG00000053293.10_3	chr5	-	4153	6	ISM	ENSMUSG00000053293.10	ENSMUST00000111171.6	5580	13	10602	4	10602	-4	3prime_fragment	FALSE	canonical	3	182	junction_3	16.4365446490435	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGATGTGAGTTTGCCCTT	NA	False	NA	-9	True	AATAAA	-14	NA	135412798	135404998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_135407029_135407488_135407612_135409773_135411391_135411924_135412099_135412480_135412584_135412692
ENSMUSG00000053297.15_2	chr6	+	2472	4	FSM	ENSMUSG00000053297.15	ENSMUST00000095938.10	3517	4	-415	1460	-415	-1460	multi-exon	FALSE	canonical	2	5	junction_2	3.09120616516523	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCTTTTAGTCCATCCA	1260	False	NA	NA	False	AATAAA	-15	NA	48603282	48609159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48604048_48606061_48606939_48607105_48607250_48608473
ENSMUSG00000053297.15_3	chr6	+	3002	3	ISM	ENSMUSG00000053297.15	ENSMUST00000154570.2	3806	4	1349	13	1349	-9	3prime_fragment	FALSE	canonical	3	5	junction_1	3.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTCTACAACAGATTTTA	682	False	NA	NA	False	AATAAA	-2	NA	48606217	48610610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_48606939_48607105_48607250_48608473
ENSMUSG00000053310.12_0	chr9	-	810	4	FSM	ENSMUSG00000053310.12	ENSMUST00000065668.12	1453	4	192	451	192	11	multi-exon	FALSE	canonical	3	21	junction_3	6.12825877028341	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAGAA	NA	False	NA	-34	True	NA	NA	NA	37464008	37456238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_37456628_37456995_37457014_37457243_37457471_37463832
ENSMUSG00000053317.12_0	chr4	+	543	4	FSM	ENSMUSG00000053317.12	ENSMUST00000065678.6	564	4	12	9	12	-9	multi-exon	FALSE	canonical	3	2329	junction_2	60.4225859169308	428	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGAGACTGGTTGCCTG	-10	True	NA	NA	False	AATAAA	-16	NA	47474669	47483233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_47474754_47474911_47475010_47480130_47480233_47482974
ENSMUSG00000053329.8_1	chr10	-	1347	7	FSM	ENSMUSG00000053329.8	ENSMUST00000001242.9	1378	7	19	12	11	-3	multi-exon	FALSE	canonical	3	30	junction_5	5.05799696849784	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTTTCAGCTATGTC	4150	False	NA	-14	True	AATAAA	-17	NA	78005597	77997911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_77998553_77999230_77999388_78000671_78000765_78003228_78003349_78004642_78004757_78005206_78005260_78005428
ENSMUSG00000053329.8_4	chr10	-	280	1	ISM	ENSMUSG00000053329.8	ENSMUST00000001242.9	1378	7	7425	12	5085	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTTTCAGCTATGTC	NA	False	NA	-14	True	AATAAA	-17	NA	77998191	77997911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_77997900_77998200
ENSMUSG00000053332.14_15	chr1	+	3369	1	FSM	ENSMUSG00000065160.3	ENSMUST00000083226.3	84	1	-2190	-1095	-2190	1095	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	17	True	ATTAAA	-13	NA	160862735	160866104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_160862700_160866100
ENSMUSG00000053332.14_2	chr1	+	498	12	FSM	ENSMUSG00000053332.14	ENSMUST00000162558.8	502	12	3	1	0	1	multi-exon	TRUE	canonical	3	1206	junction_7	1656.43137771865	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGTGAAGTGTGCATTT	NA	False	NA	19	True	ATTAAA	-15	NA	160862735	160866106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053332.14_5	chr1	+	457	11	FSM	ENSMUSG00000053332.14	ENSMUST00000159706.8	557	11	99	1	0	1	multi-exon	FALSE	canonical	3	3085	junction_7	1053.46856146731	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGTGAAGTGTGCATTT	NA	False	NA	19	True	ATTAAA	-15	NA	160862735	160866106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053332.14_9	chr1	+	454	11	NNC	ENSMUSG00000053332.14	novel	557	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1733.83285238226	179	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862735	160866107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864882_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053333.16_0	chr1	+	3113	21	FSM	ENSMUSG00000053333.16	ENSMUST00000065694.8	3085	21	-25	-3	-1	0	multi-exon	FALSE	canonical	3	71	junction_5	12.4998999996	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGTGTAGATGCCATG	NA	False	NA	15	True	AATAAA	-16	NA	86631539	86977817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86901121_86901230_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554_86976657_86977344
ENSMUSG00000053333.16_1	chr1	+	3024	20	NIC	ENSMUSG00000053333.16	novel	3085	21	NA	NA	-14	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	24.2666397775667	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCTGTCTGTGTAGATG	NA	False	NA	10	True	AATAAA	-11	NA	86631515	86977812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_86631594_86672402_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554_86976657_86977344
ENSMUSG00000053333.16_10	chr1	+	3169	22	FSM	ENSMUSG00000053333.16	ENSMUST00000168237.8	3154	22	-14	-1	-3	1	multi-exon	FALSE	canonical	3	10	junction_6	26.8303649010897	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTGTAGATGCCATGG	NA	False	NA	16	True	AATAAA	-17	NA	86631526	86977818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86719137_86719180_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86901121_86901230_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554_86976657_86977344
ENSMUSG00000053333.16_13	chr1	+	3055	20	ISM	ENSMUSG00000053333.16	ENSMUST00000065694.8	3085	21	40837	2	40837	-2	3prime_fragment	FALSE	canonical	3	71	junction_4	12.5123761447098	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCTGTCTGTGTAGATG	NA	False	NA	10	True	AATAAA	-11	NA	86672401	86977812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86901121_86901230_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554_86976657_86977344
ENSMUSG00000053334.7_0	chr5	+	3141	3	FSM	ENSMUSG00000053334.7	ENSMUST00000065698.7	3133	3	-8	0	-8	0	multi-exon	FALSE	canonical	3	46	junction_2	4.5	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACATTGCGTTGTCTCA	707	False	NA	NA	False	AATAAA	-11	NA	113873855	113878661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_113874111_113874881_113875234_113876127
ENSMUSG00000053334.7_1	chr5	+	2341	1	ISM	ENSMUSG00000053334.7	ENSMUST00000065698.7	3133	3	2457	0	2457	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACATTGCGTTGTCTCA	3172	False	NA	NA	False	AATAAA	-11	NA	113876320	113878661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_113876300_113878700
ENSMUSG00000053334.7_2	chr5	+	2577	2	ISM	ENSMUSG00000053334.7	ENSMUST00000065698.7	3133	3	1319	8	1319	-8	3prime_fragment	FALSE	canonical	3	46	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTATTACAAACATTGCG	2034	False	NA	NA	False	AATAAA	-3	NA	113875182	113878653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_113875234_113876127
ENSMUSG00000053347.16_0	chr17	+	2732	4	FSM	ENSMUSG00000053347.16	ENSMUST00000055349.15	2741	4	4	5	-3	-5	multi-exon	TRUE	canonical	3	11	junction_3	5.73488351136175	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGGACTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	22181536	22213342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_22181801_22207011_22207083_22209759_22209887_22211072
ENSMUSG00000053347.16_4	chr17	+	2123	1	ISM	ENSMUSG00000053347.16	ENSMUST00000055349.15	2741	4	29687	5	29653	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGGACTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	22211219	22213342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_22211200_22213300
ENSMUSG00000053367.16_1	chr7	+	929	9	NIC	ENSMUSG00000053367.16	novel	957	16	NA	NA	-215	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	26.4952825989835	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATTTTTGATTCAGTGC	2997	False	NA	3	True	AATAAA	-18	NA	6263319	6284855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_6263544_6266905_6266933_6269287_6269345_6269828_6269847_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUSG00000053367.16_12	chr7	+	895	8	NIC	ENSMUSG00000053367.16	novel	957	16	NA	NA	-215	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	31.8875575504085	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGATTGATTTTTGAT	2997	False	NA	-4	True	AATAAA	-11	NA	6263319	6284848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_6263544_6269287_6269345_6269828_6269847_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUSG00000053367.16_2	chr7	+	883	8	NIC	ENSMUSG00000053367.16	novel	684	11	NA	NA	-226	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	30.8353097362522	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATTTTTGATTCAGTGC	2986	False	NA	3	True	AATAAA	-18	NA	6263308	6284855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_6263544_6266905_6266933_6269828_6269847_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUSG00000053367.16_3	chr7	+	866	7	NIC	ENSMUSG00000053367.16	novel	684	11	NA	NA	-223	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	28.9290319383295	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGATTCAGTGCGTAT	2989	False	NA	7	True	AATAAA	-22	NA	6263311	6284859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_6263544_6266905_6266933_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUSG00000053388.11_0	chr5	+	1944	7	NNC	ENSMUSG00000053388.11	novel	1456	6	NA	NA	-1384	-26	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	2.86744175568088	25	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	135380764	135396833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_135380916_135382136_135382549_135387708_135387805_135392581_135392813_135392903_135392927_135395394_135395520_135395927
ENSMUSG00000053390.17_0	chr17	+	2791	4	FSM	ENSMUSG00000053390.17	ENSMUST00000087666.11	2950	4	-55	214	3	-214	multi-exon	FALSE	canonical	3	36	junction_3	3.55902608401044	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTGATTTTGTGGAAT	NA	False	NA	6	True	AATAAA	-13	NA	33212115	33224217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33212233_33220597_33220725_33220931_33220993_33221731
ENSMUSG00000053390.17_10	chr17	+	4007	3	ISM	ENSMUSG00000053390.17	ENSMUST00000087666.11	2950	4	7094	214	7090	-214	3prime_fragment	FALSE	canonical	3	36	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTGATTTTGTGGAAT	NA	False	NA	6	True	AATAAA	-13	NA	33219264	33224217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33220725_33220931_33220993_33221731
ENSMUSG00000053390.17_13	chr17	+	2121	1	ISM	ENSMUSG00000053390.17	ENSMUST00000141815.3	3118	5	9982	216	9920	-216	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGTCTGATTTTGTGGA	NA	False	NA	4	True	AATAAA	-11	NA	33222094	33224215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33222100_33224200
ENSMUSG00000053390.17_2	chr17	+	2901	5	FSM	ENSMUSG00000053390.17	ENSMUST00000141815.3	3118	5	3	214	3	-214	multi-exon	FALSE	canonical	0	0	junction_3	19.9170153386495	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTGATTTTGTGGAAT	NA	False	NA	6	True	AATAAA	-13	NA	33212115	33224217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33212233_33220597_33220725_33220931_33220993_33221496_33221607_33221731
ENSMUSG00000053390.17_4	chr17	+	2652	3	NIC	ENSMUSG00000053390.17	novel	2950	4	NA	NA	15	-214	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	18	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTGATTTTGTGGAAT	NA	False	NA	6	True	AATAAA	-13	NA	33212127	33224217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_33212233_33220931_33220993_33221731
ENSMUSG00000053390.17_9	chr17	+	197	1	Genic_Genomic	ENSMUSG00000053390.17	novel	NA	NA	NA	NA	4219	34	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAATTTTTATTATTTT	NA	False	NA	NA	False	NA	NA	NA	33216393	33216590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_+_33216400_33216600
ENSMUSG00000053398.12_1	chr3	-	1825	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	67	1	67	-1	multi-exon	FALSE	canonical	3	1070	junction_1	240.376770374213	2454	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGTGTCTGTGTGATCA	NA	False	NA	-3	True	AGTAAA	-15	NA	98247239	98220486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
ENSMUSG00000053411.17_0	chr15	-	2052	1	ISM	ENSMUSG00000053411.17	ENSMUST00000109616.9	2899	7	14793	1	14657	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTCTGTGTGTCTGGTT	2664	False	NA	-8	True	ATTAAA	-23	NA	79802060	79800008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79800000_79802100
ENSMUSG00000053411.17_1	chr15	-	3193	6	FSM	ENSMUSG00000053411.17	ENSMUST00000109615.8	710	6	-181	-2302	47	-1	multi-exon	FALSE	canonical	3	216	junction_5	106.136892737634	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTCTGTGTGTCTGGTT	NA	False	NA	-8	True	ATTAAA	-23	NA	79816922	79800008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
ENSMUSG00000053411.17_15	chr15	-	3406	2	ISM	ENSMUSG00000053411.17	ENSMUST00000089293.11	3388	6	13150	-2	13027	-1	3prime_fragment	FALSE	canonical	3	419	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTCTGTGTGTCTGGTT	1034	False	NA	-8	True	ATTAAA	-23	NA	79803690	79800008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79802678_79802953
ENSMUSG00000053411.17_3	chr15	-	2964	7	FSM	ENSMUSG00000053411.17	ENSMUST00000109616.9	2899	7	-66	1	50	-1	multi-exon	FALSE	canonical	3	156	junction_1	127.989582909444	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTCTGTGTGTCTGGTT	NA	False	NA	-8	True	ATTAAA	-23	NA	79816919	79800008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
ENSMUSG00000053411.17_5	chr15	-	3175	6	FSM	ENSMUSG00000053411.17	ENSMUST00000132821.8	528	6	-6	-2641	-5	-1	multi-exon	FALSE	canonical	3	258	junction_5	93.730251253264	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTCTGTGTGTCTGGTT	NA	False	NA	-8	True	ATTAAA	-23	NA	79855325	79800008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
ENSMUSG00000053411.17_7	chr15	-	2948	7	NIC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	3	156	junction_1	121.853737461488	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTCTGTGTGTCTGGTT	NA	False	NA	-8	True	ATTAAA	-23	NA	79855324	79800008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
ENSMUSG00000053414.9_0	chr16	+	5024	11	FSM	ENSMUSG00000053414.9	ENSMUST00000065856.8	5393	11	365	4	365	-4	multi-exon	FALSE	canonical	3	95	junction_1	15.4272486205415	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATGGCTGCTGCTTTGTT	NA	False	NA	5	True	AATATA	-39	NA	90183265	90296437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_90183605_90229401_90229695_90244197_90244254_90250567_90250704_90261028_90261157_90269331_90269468_90272707_90272871_90278137_90278222_90284746_90284795_90290300_90290482_90292977
ENSMUSG00000053414.9_13	chr16	+	2618	1	ISM	ENSMUSG00000053414.9	ENSMUST00000065856.8	5393	11	110921	2	35037	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTGCTGCTTTGTTTA	9230	False	NA	7	True	AATATA	-41	NA	90293821	90296439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_90293800_90296400
ENSMUSG00000053436.16_0	chr17	+	3454	12	FSM	ENSMUSG00000053436.16	ENSMUST00000062694.16	3548	12	87	7	-11	-6	multi-exon	FALSE	canonical	3	310	junction_9	36.7805643969117	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCAGTTGGTTTCTCAG	5164	False	NA	5	True	AATAAA	-12	NA	28910402	28967372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28910830_28932747_28932878_28934356_28934416_28943717_28943830_28944466_28944497_28944770_28944819_28947330_28947446_28947877_28947950_28955984_28956065_28960761_28960841_28963956_28964131_28965244
ENSMUSG00000053436.16_2	chr17	+	3455	12	FSM	ENSMUSG00000053436.16	ENSMUST00000004990.14	3562	12	99	8	-12	-6	multi-exon	FALSE	canonical	3	53	junction_9	126.485422019579	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCAGTTGGTTTCTCAG	5163	False	NA	5	True	AATAAA	-12	NA	28910401	28967372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28910830_28932747_28932878_28934356_28934416_28943717_28943830_28944466_28944497_28944770_28944819_28947330_28947446_28947877_28947950_28959653_28959734_28960761_28960841_28963956_28964131_28965244
ENSMUSG00000053436.16_37	chr17	+	1792	1	ISM	ENSMUSG00000053436.16	ENSMUST00000004990.14	3562	12	55284	2	4994	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTTTCTCAGGTTTAT	NA	False	NA	11	True	AATAAA	-18	NA	28965586	28967378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_28965600_28967400
ENSMUSG00000053453.10_1	chr14	+	928	8	FSM	ENSMUSG00000053453.10	ENSMUST00000065865.10	937	8	6	3	6	-1	multi-exon	TRUE	canonical	3	370	junction_1	118.776758531907	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTTTGTGCTCATTCAA	NA	False	NA	19	True	AATAAA	-13	NA	8508491	8520748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_14	chr14	+	1007	8	NIC	ENSMUSG00000053453.10	novel	707	6	NA	NA	126	-2	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	230.414976128918	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATCTTTGTGCTCATTCA	NA	False	NA	18	True	AATAAA	-12	NA	8508728	8520747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_8508896_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_18	chr14	+	837	7	ISM	ENSMUSG00000053453.10	ENSMUST00000225401.2	951	9	6558	6	-34	-6	3prime_fragment	FALSE	canonical	3	621	junction_4	43.4920171474669	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGGATCTTTGTGCTCA	NA	False	NA	14	True	AATAAA	-8	NA	8515105	8520743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_2	chr14	+	1044	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	272.312292001298	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTTTGTGCTCATTCAA	NA	False	NA	19	True	AATAAA	-13	NA	8508547	8520748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_8508579_8512131_8512304_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_3	chr14	+	948	9	FSM	ENSMUSG00000053453.10	ENSMUST00000225401.2	951	9	1	2	1	-2	multi-exon	FALSE	canonical	3	34	junction_2	279.504472236134	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATCTTTGTGCTCATTCA	NA	False	NA	18	True	AATAAA	-12	NA	8508548	8520747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_8508579_8512131_8512210_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8	chr14	+	855	8	NIC	ENSMUSG00000053453.10	novel	937	8	NA	NA	9	-1	combination_of_known_junctions	FALSE	canonical	3	208	junction_2	184.198207352397	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTTTGTGCTCATTCAA	NA	False	NA	19	True	AATAAA	-13	NA	8508537	8520748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_8508579_8515106_8515198_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_9	chr14	+	1035	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	287.160125191504	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508537	8520749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_8508579_8512131_8512284_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053460.9_0	chr6	+	2898	15	FSM	ENSMUSG00000053460.9	ENSMUST00000065906.9	2929	15	24	7	-9	-7	multi-exon	FALSE	canonical	3	31	junction_7	7.03816128585544	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCACTACCTGGCTTA	1305	False	NA	5	True	NA	NA	NA	72391314	72407688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72395450_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72404880_72405033_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
ENSMUSG00000053460.9_1	chr6	+	3306	14	NIC	ENSMUSG00000053460.9	novel	2929	15	NA	NA	-1	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	18.9274541528981	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAATTCACTACCTGGCT	1280	False	NA	3	True	NA	NA	NA	72391289	72407686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_72391433_72391654_72391826_72394837_72395450_72395999_72396250_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
ENSMUSG00000053460.9_12	chr6	+	1288	5	ISM	ENSMUSG00000053460.9	ENSMUST00000207012.2	2014	13	10699	-463	1937	-7	3prime_fragment	FALSE	canonical	3	38	junction_4	6.74536878161602	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCACTACCTGGCTTA	9755	False	NA	5	True	NA	NA	NA	72405536	72407688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
ENSMUSG00000053460.9_37	chr6	+	2079	9	ISM	ENSMUSG00000053460.9	ENSMUST00000065906.9	2929	15	11497	7	-812	-7	3prime_fragment	FALSE	canonical	3	31	junction_1	7.76912961663017	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCACTACCTGGCTTA	7006	False	NA	5	True	NA	NA	NA	72402787	72407688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_72402933_72403343_72403610_72404024_72404157_72404880_72405033_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
ENSMUSG00000053460.9_4	chr6	+	1219	5	NIC	ENSMUSG00000053460.9	novel	2929	15	NA	NA	5	-4438	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	19.7547462651384	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTCCCACCTCCAAGTTC	1286	False	NA	NA	False	ATTAAA	-17	NA	72391295	72396585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72395450_72395999
ENSMUSG00000053470.14_0	chr6	-	4767	27	FSM	ENSMUSG00000053470.14	ENSMUST00000065509.11	4816	27	-24	73	-24	-8	multi-exon	FALSE	canonical	3	176	junction_18	110.285703472991	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTTGTCGCTGTTCTT	NA	False	NA	-25	True	ATTAAA	-11	NA	71609913	71566028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
ENSMUSG00000053470.14_1	chr6	-	3103	17	NIC	ENSMUSG00000053470.14	novel	4853	26	NA	NA	75	-8	combination_of_known_junctions	FALSE	canonical	3	172	junction_16	78.1394736592844	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTTGTCGCTGTTCTT	NA	False	NA	-25	True	ATTAAA	-11	NA	71586048	71566028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
ENSMUSG00000053470.14_2	chr6	-	4817	28	NIC	ENSMUSG00000053470.14	novel	4816	27	NA	NA	-21	-8	combination_of_known_junctions	FALSE	canonical	3	43	junction_18	130.557000254681	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTTGTCGCTGTTCTT	NA	False	NA	-25	True	ATTAAA	-11	NA	71609910	71566028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71593801_71593855_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
ENSMUSG00000053470.14_33	chr6	-	3020	16	ISM	ENSMUSG00000053470.14	ENSMUST00000167220.4	4853	26	25103	71	1556	-8	3prime_fragment	FALSE	canonical	3	336	junction_9	48.7462363219516	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTTGTCGCTGTTCTT	NA	False	NA	-25	True	ATTAAA	-11	NA	71584567	71566028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385
ENSMUSG00000053470.14_6	chr6	-	4752	26	FSM	ENSMUSG00000053470.14	ENSMUST00000167220.4	4853	26	30	71	30	-8	multi-exon	TRUE	canonical	3	176	junction_18	109.170809285266	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTTGTCGCTGTTCTT	NA	False	NA	-25	True	ATTAAA	-11	NA	71609640	71566028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480
ENSMUSG00000053475.6_0	chr2	+	1741	6	FSM	ENSMUSG00000053475.6	ENSMUST00000065927.6	1710	6	-41	10	-41	-10	multi-exon	FALSE	canonical	1	1	junction_5	0.632455532033676	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATATAAACATTTTGTAG	NA	False	NA	NA	False	AATAAA	-7	NA	51927979	51946688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_51928282_51933740_51933879_51937442_51937605_51940854_51941084_51942315_51942357_51945819
ENSMUSG00000053477.19_10	chr18	+	3485	20	NIC	ENSMUSG00000053477.19	novel	2986	20	NA	NA	-19	-16	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	26.5128411891754	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATACAAAAATTAAAA	3625	False	NA	NA	False	AATACA	-19	NA	69479224	69817398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697107_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811189_69814639_69814870_69815753_69815895_69816147
ENSMUSG00000053477.19_11	chr18	+	3431	20	FSM	ENSMUSG00000053477.19	ENSMUST00000202116.4	2986	20	492	-937	38	-16	multi-exon	FALSE	canonical	3	43	junction_17	23.6466368624176	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATACAAAAATTAAAA	3682	False	NA	NA	False	AATACA	-19	NA	69479281	69817398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811189_69814639_69814870_69815753_69815895_69816147
ENSMUSG00000053477.19_12	chr18	+	3435	20	NIC	ENSMUSG00000053477.19	novel	2192	20	NA	NA	40	-19	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	25.7485174249798	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGAAAAAATACAAAAATTA	3684	False	NA	NA	False	AATACA	-16	NA	69479283	69817395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697107_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
ENSMUSG00000053477.19_13	chr18	+	7046	20	NIC	ENSMUSG00000053477.19	novel	2192	20	NA	NA	24	-48	combination_of_known_junctions	FALSE	canonical	3	8	junction_13	27.706314969636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAACTGTCTCTGACACT	3668	False	NA	NA	False	AATAAA	-12	NA	69479267	69820990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788034_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
ENSMUSG00000053477.19_25	chr18	+	2892	13	FSM	ENSMUSG00000053477.19	ENSMUST00000114978.9	2437	13	425	-880	0	-18	multi-exon	FALSE	canonical	3	8	junction_1	33.3437483729043	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAAAATACAAAAATTAA	NA	False	NA	NA	False	AATACA	-17	NA	69726483	69817396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_69726656_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
ENSMUSG00000053477.19_29	chr18	+	1330	4	ISM	ENSMUSG00000053477.19	ENSMUST00000114978.9	2437	13	84962	-410	-1749	222	3prime_fragment	FALSE	canonical	3	57	junction_1	39.4067112163511	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGGATTTTTTTTTTT	NA	False	NA	NA	False	AAGAAA	-12	NA	69811020	69816926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_69811201_69814639_69814870_69815753_69815895_69816147
ENSMUSG00000053477.19_30	chr18	+	1564	3	FSM	ENSMUSG00000053477.19	ENSMUST00000146908.2	3693	3	1928	201	-753	-16	multi-exon	FALSE	canonical	3	123	junction_1	14	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATACAAAAATTAAAA	NA	False	NA	NA	False	AATACA	-19	NA	69814697	69817398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_69814870_69815753_69815895_69816147
ENSMUSG00000053477.19_31	chr18	+	1352	2	FSM	ENSMUSG00000053477.19	ENSMUST00000136019.3	1001	2	343	-694	343	-16	multi-exon	FALSE	canonical	3	151	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATACAAAAATTAAAA	NA	False	NA	NA	False	AATACA	-19	NA	69815793	69817398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_69815895_69816147
ENSMUSG00000053477.19_32	chr18	+	2924	1	ISM	ENSMUSG00000053477.19	ENSMUST00000114985.10	8577	20	340508	1159	2617	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACTGTCTCTGACACTT	NA	False	NA	NA	False	AATAAA	-13	NA	69818067	69820991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_69818100_69821000
ENSMUSG00000053477.19_56	chr18	+	1790	4	ISM	ENSMUSG00000053477.19	ENSMUST00000202474.4	1810	13	65506	-1129	-1749	-16	3prime_fragment	FALSE	canonical	3	43	junction_1	45.7626728046147	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATACAAAAATTAAAA	NA	False	NA	NA	False	AATACA	-19	NA	69811020	69817398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_69811189_69814639_69814870_69815753_69815895_69816147
ENSMUSG00000053477.19_9	chr18	+	3454	20	FSM	ENSMUSG00000053477.19	ENSMUST00000114980.8	2192	20	-160	-1102	27	-16	multi-exon	FALSE	canonical	3	47	junction_6	22.735258229433	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATACAAAAATTAAAA	3671	False	NA	NA	False	AATACA	-19	NA	69479270	69817398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
ENSMUSG00000053483.16_0	chr1	-	2154	13	FSM	ENSMUSG00000053483.16	ENSMUST00000065941.12	2219	13	52	13	-15	0	multi-exon	FALSE	non_canonical	0	0	junction_3	116.920794652714	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAAGTGATGTTCAT	NA	False	NA	NA	False	AATAAA	-7	NA	171115512	171109531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
ENSMUSG00000053483.16_1	chr1	-	1891	13	NIC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	-13	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	150.066721272017	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAAGTGATGTTCAT	NA	False	NA	NA	False	AATAAA	-7	NA	171115510	171109531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171114183_171114544_171115334
ENSMUSG00000053483.16_3	chr1	-	2091	12	NIC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	-12	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_3	156.020077114485	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAAGTGATGTTCAT	NA	False	NA	NA	False	AATAAA	-7	NA	171115509	171109531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113922_171114544_171115334
ENSMUSG00000053510.13_1	chr4	+	3680	31	FSM	ENSMUSG00000053510.13	ENSMUST00000065977.11	4311	31	4	627	4	-11	multi-exon	FALSE	canonical	1	202	junction_11	90.2713440442511	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAACGTGTATTTAAAGA	9944	False	NA	28	True	AATAAA	-20	NA	108857855	108918347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
ENSMUSG00000053510.13_3	chr4	+	3880	33	FSM	ENSMUSG00000053510.13	ENSMUST00000106644.9	3784	33	-107	11	8	-11	multi-exon	FALSE	canonical	1	36	junction_3	173.040085222326	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAACGTGTATTTAAAGA	9948	False	NA	28	True	AATAAA	-20	NA	108857859	108918347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_108858362_108870706_108871038_108873848_108873983_108874823_108874894_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
ENSMUSG00000053536.8_0	chr19	+	3580	1	FSM	ENSMUSG00000053536.8	ENSMUST00000066039.8	4233	1	172	481	172	-481	mono-exon	FALSE	NA	NA	NA	NA	NA	668	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGGTATTTTGTATGTTT	NA	False	NA	11	True	AATAAA	-13	NA	31060408	31063988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_31060400_31064000
ENSMUSG00000053550.14_0	chr7	-	3328	1	ISM	ENSMUSG00000053550.14	ENSMUST00000117452.8	5211	5	7294	1	2247	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCAGCCTCAAGGTTTT	5192	False	NA	NA	False	AATAAA	-15	NA	4831879	4828551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_4828600_4831900
ENSMUSG00000053550.14_2	chr7	-	5364	4	ISM	ENSMUSG00000053550.14	ENSMUST00000119433.4	3481	5	8317	-2474	-205	0	3prime_fragment	FALSE	canonical	3	5	junction_2	2.86744175568088	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCAGCCTCAAGGTTTT	5625	False	NA	NA	False	AATAAA	-15	NA	4839378	4828551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_4833275_4833757_4833908_4837228_4837384_4839042
ENSMUSG00000053550.14_3	chr7	-	5404	5	FSM	ENSMUSG00000053550.14	ENSMUST00000117452.8	5211	5	-196	3	-196	-2	multi-exon	FALSE	canonical	3	9	junction_4	3.08220700148449	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTTCAGCCTCAAGGTT	5634	False	NA	NA	False	AATAAA	-13	NA	4839369	4828553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4833275_4833757_4833908_4834671_4834723_4837228_4837384_4839042
ENSMUSG00000053553.12_0	chr5	-	1433	5	FSM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	-12	8	-3	-8	multi-exon	FALSE	canonical	3	675	junction_4	25.951878544722	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTATTCCTGACTTTT	NA	False	NA	-14	True	NA	NA	NA	139446269	139345501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139346486_139347061_139347144_139349727_139349919_139441171_139441302_139446223
ENSMUSG00000053553.12_2	chr5	-	2015	4	FSM	ENSMUSG00000053553.12	ENSMUST00000198474.2	2030	4	13	2	-3	-2	multi-exon	FALSE	canonical	3	675	junction_3	29.698484809835	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCCTGACTTTTTGCCTG	NA	False	NA	-8	True	NA	NA	NA	139446269	139345495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139347144_139349727_139349919_139441171_139441302_139446223
ENSMUSG00000053559.14_1	chr15	-	1034	4	FSM	ENSMUSG00000053559.14	ENSMUST00000172334.9	920	4	-28	-86	-28	-1	multi-exon	FALSE	canonical	3	417	junction_3	158.779371736032	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTTCATTTTCAAGAAC	NA	False	NA	-8	True	ATTAAA	-13	NA	100534849	100519243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534629
ENSMUSG00000053559.14_2	chr15	-	1026	4	FSM	ENSMUSG00000053559.14	ENSMUST00000066068.7	1135	4	86	23	-78	0	multi-exon	FALSE	canonical	3	310	junction_3	209.183067086119	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTCATTTTCAAGAACT	NA	False	NA	-7	True	ATTAAA	-14	NA	100534650	100519242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534439
ENSMUSG00000053559.14_9	chr15	-	969	4	FSM	ENSMUSG00000053559.14	ENSMUST00000229965.2	586	4	-107	-276	-31	-1	multi-exon	FALSE	canonical	3	57	junction_1	287.836759292485	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTTCATTTTCAAGAAC	NA	False	NA	-8	True	ATTAAA	-13	NA	100534852	100519243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100519840_100520509_100520591_100534067_100534137_100534629
ENSMUSG00000053560.6_0	chr8	-	1514	1	FSM	ENSMUSG00000053560.6	ENSMUST00000060427.6	1524	1	3	7	3	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACGCGCGGCTTGTCTGG	NA	False	NA	-8	True	AATAAA	-13	NA	85389480	85387966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85388000_85389500
ENSMUSG00000053565.11_1	chr7	-	757	8	FSM	ENSMUSG00000053565.11	ENSMUST00000066070.7	774	8	16	1	7	0	multi-exon	FALSE	canonical	3	2641	junction_1	370.651715060852	970	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	-5	True	AATAAA	-16	NA	28681223	28670797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
ENSMUSG00000053574.6_0	chr11	+	3234	1	FSM	ENSMUSG00000053574.6	ENSMUST00000066087.5	2606	1	63	-691	29	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTCTTGTAAAGAAGTCA	NA	False	NA	NA	False	AATAAA	-4	NA	72106026	72109260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72106000_72109300
ENSMUSG00000053574.6_1	chr11	+	1452	2	FSM	ENSMUSG00000053574.6	ENSMUST00000124762.2	1427	2	-25	0	9	0	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTCACTTCTTATTC	NA	False	NA	NA	False	AATAAA	-14	NA	72105972	72109270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72106828_72108673
ENSMUSG00000053580.17_1	chr11	+	7175	26	FSM	ENSMUSG00000053580.17	ENSMUST00000100330.10	11855	26	-267	4947	-262	242	multi-exon	FALSE	canonical	1	3	junction_22	4.4728514395182	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	105480549	105815183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_105481076_105515860_105515951_105564245_105564318_105604207_105604280_105667631_105667781_105670764_105670952_105689386_105689651_105701297_105701424_105725774_105726057_105731444_105731579_105748222_105748455_105754742_105754910_105757992_105758601_105777183_105777293_105786671_105786795_105787293_105787531_105790509_105790696_105792885_105792980_105799820_105799955_105801028_105801153_105803737_105803914_105804182_105804316_105805717_105805810_105807739_105807887_105810776_105810878_105812573
ENSMUSG00000053580.17_2	chr11	+	2365	12	NIC	ENSMUSG00000053580.17	novel	11855	26	NA	NA	-260	-52000	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	5.8479352858456	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCTTGGCTCAAACTAAT	NA	False	NA	NA	False	AGTAAA	-16	NA	105480551	105754864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_105481076_105515860_105515951_105564245_105564318_105604207_105604391_105667631_105667781_105670764_105670952_105689386_105689651_105701297_105701424_105725774_105726057_105731444_105731579_105748222_105748455_105754742
ENSMUSG00000053580.17_5	chr11	+	4058	10	ISM	ENSMUSG00000053580.17	ENSMUST00000100330.10	11855	26	309607	4772	-124	-200	3prime_fragment	FALSE	canonical	1	3	junction_6	3.25841739969226	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAATTCCAGGAGAACT	5605	False	NA	NA	False	AATAAA	-20	NA	105790423	105815358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_105790696_105792885_105792980_105799820_105799955_105801028_105801153_105803737_105803914_105804182_105804316_105805717_105805810_105807739_105807887_105810776_105810878_105812573
ENSMUSG00000053580.17_7	chr11	+	6550	1	ISM	ENSMUSG00000053580.17	ENSMUST00000100330.10	11855	26	332759	5	20767	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAACCTGGTGTCTGCTGC	NA	False	NA	NA	False	TATAAA	-15	NA	105813575	105820125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_105813600_105820100
ENSMUSG00000053581.14_0	chr5	-	3065	7	FSM	ENSMUSG00000053581.14	ENSMUST00000079996.13	3169	7	94	10	9	-5	multi-exon	FALSE	canonical	3	27	junction_6	14.7271480229163	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATTTTTTATTCTAGAC	8771	False	NA	-16	True	AATAAA	-14	NA	139470210	139456975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470020
ENSMUSG00000053581.14_1	chr5	-	1557	1	ISM	ENSMUSG00000053581.14	ENSMUST00000079996.13	3169	7	11772	10	6166	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATTTTTTATTCTAGAC	2089	False	NA	-16	True	AATAAA	-14	NA	139458532	139456975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_139457000_139458500
ENSMUSG00000053581.14_2	chr5	-	3051	7	FSM	ENSMUSG00000053581.14	ENSMUST00000110851.8	3121	7	65	5	12	-5	multi-exon	FALSE	canonical	3	34	junction_6	12.5532200384337	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATTTTTTATTCTAGAC	8774	False	NA	-16	True	AATAAA	-14	NA	139470207	139456975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470031
ENSMUSG00000053588.5_0	chr14	-	544	1	FSM	ENSMUSG00000053588.5	ENSMUST00000238215.2	1312	1	502	266	500	-266	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCTTTTTACTTCATTC	NA	False	NA	NA	False	AATACA	-15	NA	55797363	55796819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55796800_55797400
ENSMUSG00000053600.9_0	chr17	+	2173	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	21	182	-10	-182	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGCTGAGTTTATAAGG	NA	False	NA	60	True	AATAAA	-10	NA	33184808	33198025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
ENSMUSG00000053600.9_4	chr17	+	1951	2	ISM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	10413	182	10382	-182	3prime_fragment	FALSE	canonical	3	83	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGCTGAGTTTATAAGG	NA	False	NA	60	True	AATAAA	-10	NA	33195200	33198025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33195259_33196132
ENSMUSG00000053600.9_5	chr17	+	1783	3	ISM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	10110	467	10079	-467	3prime_fragment	FALSE	canonical	3	72	junction_1	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTCAACGAAGCCTGTG	NA	False	NA	NA	False	AGTAAA	-15	NA	33194897	33197740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33195015_33195200_33195259_33196132
ENSMUSG00000053613.7_0	chr11	+	961	1	FSM	ENSMUSG00000053613.7	ENSMUST00000151998.2	2659	1	1698	0	1698	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTCTCAGGAGCAGGAC	NA	False	NA	NA	False	NA	NA	NA	120551680	120552641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120551700_120552600
ENSMUSG00000053617.13_0	chr19	-	2709	1	ISM	ENSMUSG00000053617.13	ENSMUST00000081619.10	10454	15	201512	7	51862	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGAACAGAAGCACGCGA	NA	False	NA	-5	True	AATAAA	-16	NA	47251328	47248619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_47248600_47251300
ENSMUSG00000053617.13_5	chr19	-	1259	6	NIC	ENSMUSG00000053617.13	novel	799	5	NA	NA	-190	9	combination_of_known_junctions	TRUE	canonical	1	2	junction_1	1.83303027798234	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTCCTGTGTTCCTGT	7732	False	NA	NA	False	AAGAAA	-22	NA	47453030	47352038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_47352444_47353061_47353154_47361822_47361900_47386254_47386331_47412928_47413010_47452502
ENSMUSG00000053617.13_7	chr19	-	2469	1	ISM	ENSMUSG00000053617.13	ENSMUST00000081619.10	10454	15	196898	4861	47248	1878	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAAAAAGTAATTTATGA	NA	False	NA	NA	False	ATTAAA	-3	NA	47255942	47253473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_47253500_47255900
ENSMUSG00000053626.6_0	chr8	-	5423	21	FSM	ENSMUSG00000053626.6	ENSMUST00000066166.6	4767	21	114	-770	114	770	multi-exon	TRUE	canonical	0	0	junction_18	1.14017542509914	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATATAACAACTTTACTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	64658913	64467194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_64469215_64470514_64470766_64478095_64478310_64491489_64491618_64494439_64494566_64500037_64500219_64504387_64504549_64506893_64507020_64509288_64509485_64523186_64523333_64524306_64524424_64527258_64527362_64538484_64538601_64546902_64547028_64551462_64551569_64554870_64555050_64570938_64571057_64571565_64571719_64574491_64574573_64577925_64578037_64658248
ENSMUSG00000053641.10_0	chr9	+	8372	34	FSM	ENSMUSG00000053641.10	ENSMUST00000038890.6	8645	34	-9	282	-9	-19	multi-exon	FALSE	canonical	3	9	junction_22	5.48643874485172	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATAGTTTAAGACTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	64718612	64826667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_64718869_64742567_64742635_64743235_64743364_64746094_64746427_64749721_64749972_64756407_64756478_64758493_64758664_64759697_64759940_64764948_64765016_64766580_64766640_64769184_64769330_64769608_64769785_64775043_64775145_64779109_64779329_64780275_64780422_64794138_64794273_64795767_64795904_64796201_64796409_64796497_64796627_64796871_64797014_64800567_64800685_64801679_64801812_64803615_64804713_64811431_64811622_64813282_64813378_64814119_64814296_64814384_64814520_64816782_64816982_64817212_64817468_64818946_64819065_64819168_64819196_64819635_64819799_64819957_64820023_64824240
ENSMUSG00000053641.10_1	chr9	+	7967	33	NIC	ENSMUSG00000053641.10	novel	8645	34	NA	NA	-9	0	intron_retention	FALSE	canonical	2	3	junction_2	6.19444055181741	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCCCCAGGAAATATCATT	NA	False	NA	NA	False	AATAAA	-21	NA	64718612	64826390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_64718869_64742567_64742635_64746094_64746427_64749721_64749972_64756407_64756478_64758493_64758664_64759697_64759940_64764948_64765016_64766580_64766640_64769184_64769330_64769608_64769785_64775043_64775145_64779109_64779329_64780275_64780422_64794138_64794273_64795767_64795904_64796201_64796409_64796497_64796627_64796871_64797014_64800567_64800685_64801679_64801812_64803615_64804713_64811431_64811622_64813282_64813378_64814119_64814296_64814384_64814520_64816782_64816982_64817212_64817468_64818946_64819065_64819168_64819196_64819635_64819799_64819957_64820023_64824240
ENSMUSG00000053641.10_10	chr9	+	4946	12	ISM	ENSMUSG00000053641.10	ENSMUST00000038890.6	8645	34	85271	6	7651	-6	3prime_fragment	FALSE	canonical	3	12	junction_3	5.41195493314081	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCATGCTGATAATTATT	178	False	NA	-3	True	AATAAA	-12	NA	64803892	64826943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_64804713_64811431_64811622_64813282_64813378_64814119_64814296_64814384_64814520_64816782_64816982_64817212_64817468_64818946_64819065_64819168_64819196_64819635_64819799_64819957_64820023_64824240
ENSMUSG00000053641.10_11	chr9	+	116	1	Genic_Genomic	ENSMUSG00000053641.10	novel	NA	NA	NA	NA	-6329	8	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACTAAAGTCATAGGA	1937	False	NA	NA	False	NA	NA	NA	64808149	64808265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_+_64808100_64808300
ENSMUSG00000053641.10_13	chr9	+	3289	9	ISM	ENSMUSG00000053641.10	ENSMUST00000038890.6	8645	34	95496	560	-361	-1	3prime_fragment	FALSE	canonical	3	16	junction_1	5.17052946998661	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATCCCCAGGAAATATCAT	1352	False	NA	NA	False	AATAAA	-20	NA	64814117	64826389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_64814296_64814384_64814520_64816782_64816982_64817212_64817468_64818946_64819065_64819168_64819196_64819635_64819799_64819957_64820023_64824240
ENSMUSG00000053641.10_15	chr9	+	1633	1	ISM	ENSMUSG00000053641.10	ENSMUST00000038890.6	8645	34	106689	6	5546	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCATGCTGATAATTATT	3242	False	NA	-3	True	AATAAA	-12	NA	64825310	64826943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_64825300_64826900
ENSMUSG00000053641.10_4	chr9	+	2064	8	ISM	ENSMUSG00000053641.10	ENSMUST00000215025.2	2204	10	-101	6815	-9	-6815	5prime_fragment	FALSE	canonical	3	15	junction_2	4.88228785446716	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGTTTATAGCTGCTAA	NA	False	NA	NA	False	AATAAA	-15	NA	64718612	64760488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_64718869_64742567_64742635_64743235_64743364_64746094_64746427_64749721_64749972_64756407_64756478_64758493_64758664_64759697
ENSMUSG00000053644.14_0	chr18	-	1849	18	FSM	ENSMUSG00000053644.14	ENSMUST00000066208.13	1914	18	58	7	-25	-1	multi-exon	FALSE	canonical	3	343	junction_7	37.2351547251364	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAAAGATAGGTTTGGTG	NA	False	NA	-12	True	ATTAAA	-23	NA	56695323	56659822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
ENSMUSG00000053644.14_1	chr18	-	2053	20	FSM	ENSMUSG00000053644.14	ENSMUST00000174518.8	4131	20	49	2029	49	-1	multi-exon	FALSE	canonical	3	60	junction_19	109.003545140448	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAAAGATAGGTTTGGTG	2903	False	NA	-12	True	ATTAAA	-23	NA	56705974	56659822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104_56695277_56695554_56695748_56705916
ENSMUSG00000053644.14_2	chr18	-	1946	19	ISM	ENSMUSG00000053644.14	ENSMUST00000174518.8	4131	20	10325	2029	-298	-1	3prime_fragment	FALSE	canonical	3	66	junction_18	84.4499449962908	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAAAGATAGGTTTGGTG	NA	False	NA	-12	True	ATTAAA	-23	NA	56695698	56659822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104_56695277_56695554
ENSMUSG00000053646.14_13	chr9	+	1478	1	ISM	ENSMUSG00000053646.14	ENSMUST00000072093.13	8649	38	23042	9	11637	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGGAAGCTAAGTCTTC	2115	False	NA	NA	False	AATAAA	-15	NA	108947498	108948976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108947500_108949000
ENSMUSG00000053646.14_17	chr9	+	6447	36	ISM	ENSMUSG00000053646.14	ENSMUST00000072093.13	8649	38	5630	945	-3933	-945	3prime_fragment	FALSE	canonical	2	6	junction_14	4.61267110185384	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAGTGTGGGTCTCAGGT	3472	False	NA	NA	False	ATTAAA	-10	NA	108930086	108948040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108930253_108931088_108931272_108931641_108931771_108931894_108931996_108932282_108932416_108932680_108932838_108933095_108933205_108933290_108933400_108933801_108934477_108934658_108934782_108934983_108935107_108935328_108935423_108935508_108935682_108935827_108935980_108937188_108937295_108937474_108937612_108937866_108938044_108938235_108938366_108938557_108938801_108939417_108939595_108939670_108939820_108940525_108940627_108940714_108940933_108941028_108941208_108941330_108941398_108941572_108941720_108942351_108942521_108942708_108942813_108942887_108942973_108943315_108943489_108943644_108943806_108943890_108944039_108944574_108944640_108944762_108944839_108945650_108945726_108946907
ENSMUSG00000053646.14_19	chr9	+	4321	24	ISM	ENSMUSG00000053646.14	ENSMUST00000072093.13	8649	38	11075	946	-330	-946	3prime_fragment	FALSE	canonical	2	6	junction_2	4.36821307221092	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCAGTGTGGGTCTCAGG	8917	False	NA	NA	False	ATTAAA	-9	NA	108935531	108948039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108935682_108935827_108935980_108937188_108937295_108937474_108937612_108937866_108938044_108938235_108938366_108938557_108938801_108939417_108939595_108939670_108939820_108940525_108940627_108940714_108940933_108941028_108941208_108941330_108941398_108941572_108941720_108942351_108942521_108942708_108942813_108942887_108942973_108943315_108943489_108943644_108943806_108943890_108944039_108944574_108944640_108944762_108944839_108945650_108945726_108946907
ENSMUSG00000053646.14_20	chr9	+	3430	18	ISM	ENSMUSG00000053646.14	ENSMUST00000072093.13	8649	38	14101	985	2696	-985	3prime_fragment	FALSE	canonical	2	10	junction_4	3.58871742180462	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATTGGGGAAGTATG	1507	False	NA	NA	False	NA	NA	NA	108938557	108948000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108938801_108939417_108939595_108939670_108939820_108940525_108940627_108940714_108940933_108941028_108941208_108941330_108941398_108941572_108941720_108942351_108942521_108942708_108942813_108942887_108942973_108943315_108943489_108943644_108943806_108943890_108944039_108944574_108944640_108944762_108944839_108945650_108945726_108946907
ENSMUSG00000053646.14_21	chr9	+	2228	13	ISM	ENSMUSG00000053646.14	ENSMUST00000072093.13	8649	38	16587	1284	5182	-1284	3prime_fragment	FALSE	canonical	2	13	junction_4	3.27766007321619	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTATGGACTCACCAGCC	3993	False	NA	NA	False	ATTAAA	-10	NA	108941043	108947701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108941208_108941330_108941398_108941572_108941720_108942351_108942521_108942708_108942813_108942887_108942973_108943315_108943489_108943644_108943806_108943890_108944039_108944574_108944640_108944762_108944839_108945650_108945726_108946907
ENSMUSG00000053646.14_5	chr9	+	7369	38	FSM	ENSMUSG00000053646.14	ENSMUST00000072093.13	8649	38	7	1273	7	-1273	multi-exon	TRUE	canonical	2	3	junction_1	4.99948865171935	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCAGCCCCTCTGCTAAG	9810	False	NA	NA	False	ATTAAA	-21	NA	108924463	108947712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108924714_108928338_108928392_108929139_108930253_108931088_108931272_108931641_108931771_108931894_108931996_108932282_108932416_108932680_108932838_108933095_108933205_108933290_108933400_108933801_108934477_108934658_108934782_108934983_108935107_108935328_108935423_108935508_108935682_108935827_108935980_108937188_108937295_108937474_108937612_108937866_108938044_108938235_108938366_108938557_108938801_108939417_108939595_108939670_108939820_108940525_108940627_108940714_108940933_108941028_108941208_108941330_108941398_108941572_108941720_108942351_108942521_108942708_108942813_108942887_108942973_108943315_108943489_108943644_108943806_108943890_108944039_108944574_108944640_108944762_108944839_108945650_108945726_108946907
ENSMUSG00000053646.14_7	chr9	+	2565	15	ISM	ENSMUSG00000053646.14	ENSMUST00000072093.13	8649	38	16069	1281	4664	-1281	3prime_fragment	FALSE	canonical	2	10	junction_1	3.76069902316805	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGGACTCACCAGCCCCT	3475	False	NA	NA	False	ATTAAA	-13	NA	108940525	108947704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108940627_108940714_108940933_108941028_108941208_108941330_108941398_108941572_108941720_108942351_108942521_108942708_108942813_108942887_108942973_108943315_108943489_108943644_108943806_108943890_108944039_108944574_108944640_108944762_108944839_108945650_108945726_108946907
ENSMUSG00000053646.14_9	chr9	+	2767	14	ISM	ENSMUSG00000053646.14	ENSMUST00000072093.13	8649	38	16295	941	4890	-941	3prime_fragment	FALSE	canonical	2	13	junction_5	3.15103063819447	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGGGTCTCAGGTCCAT	3701	False	NA	NA	False	ATTAAA	-14	NA	108940751	108948044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_108940933_108941028_108941208_108941330_108941398_108941572_108941720_108942351_108942521_108942708_108942813_108942887_108942973_108943315_108943489_108943644_108943806_108943890_108944039_108944574_108944640_108944762_108944839_108945650_108945726_108946907
ENSMUSG00000053654.8_0	chr11	-	1640	8	FSM	ENSMUSG00000053654.8	ENSMUST00000017270.8	1542	8	-101	3	-101	-3	multi-exon	FALSE	canonical	3	51	junction_5	18.9510648023497	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCTTGAATTCATCATT	NA	False	NA	-14	True	AATAAA	-15	NA	100160798	100153715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235
ENSMUSG00000053654.8_1	chr11	-	1289	9	NNC	ENSMUSG00000053654.8	novel	1542	8	NA	NA	-1847	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	29.6858552175948	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTGAATTCATCATTTG	NA	False	NA	-12	True	AATAAA	-17	NA	100162544	100153713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235_100160370_100162468
ENSMUSG00000053654.8_2	chr11	-	993	5	FSM	ENSMUSG00000053654.8	ENSMUST00000107406.2	1062	5	63	6	63	-1	multi-exon	FALSE	canonical	3	72	junction_1	11.3688170009021	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTGAATTCATCATTTG	NA	False	NA	-12	True	AATAAA	-17	NA	100156741	100153713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425
ENSMUSG00000053654.8_3	chr11	-	1492	9	NNC	ENSMUSG00000053654.8	novel	1542	8	NA	NA	-1444	-1	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_8	27.8632262130572	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTGAATTCATCATTTG	NA	False	NA	-12	True	AATAAA	-17	NA	100162141	100153713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235_100160370_100161862
ENSMUSG00000053684.9_1	chr10	+	3106	3	FSM	ENSMUSG00000053684.9	ENSMUST00000065600.8	3123	3	10	7	9	-7	multi-exon	FALSE	canonical	3	147	junction_1	1	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATATATACATGTATATAT	NA	False	NA	NA	False	AATAAA	-18	NA	121575851	121588763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_121576116_121581235_121581522_121586207
ENSMUSG00000053684.9_12	chr10	+	2054	1	ISM	ENSMUSG00000053684.9	ENSMUST00000065600.8	3123	3	10868	7	-75	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATATATACATGTATATAT	451	False	NA	NA	False	AATAAA	-18	NA	121586709	121588763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_121586700_121588800
ENSMUSG00000053684.9_5	chr10	+	2936	3	FSM	ENSMUSG00000053684.9	ENSMUST00000136432.2	2968	3	12	20	12	-7	multi-exon	FALSE	canonical	3	27	junction_1	61	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATATATACATGTATATAT	NA	False	NA	NA	False	AATAAA	-18	NA	121575854	121588763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_121576116_121581402_121581522_121586207
ENSMUSG00000053693.17_0	chr8	-	1253	1	ISM	ENSMUSG00000053693.17	ENSMUST00000109741.9	4872	26	24195	3	10956	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCTTGGGGTTCACACC	NA	False	NA	-2	True	AATAAA	-17	NA	85639787	85638534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_85638500_85639800
ENSMUSG00000053693.17_1	chr8	-	2726	7	NIC	ENSMUSG00000053693.17	novel	4872	26	NA	NA	5883	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	2.76887462097269	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCTTGGGGTTCACACC	NA	False	NA	-2	True	AATAAA	-17	NA	85644860	85638534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_85640137_85642083_85642221_85642308_85642432_85642784_85643015_85643181_85643389_85644355_85644604_85644681
ENSMUSG00000053693.17_3	chr8	-	2451	7	ISM	ENSMUSG00000053693.17	ENSMUST00000109741.9	4872	26	19399	1	6160	-1	3prime_fragment	FALSE	canonical	2	5	junction_6	2.42670329642684	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGGGTTCACACCTC	NA	False	NA	0	True	AATAAA	-19	NA	85644583	85638532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_85639871_85639948_85640137_85642083_85642221_85642308_85642432_85642784_85643015_85643181_85643389_85644355
ENSMUSG00000053693.17_4	chr8	-	2644	8	ISM	ENSMUSG00000053693.17	ENSMUST00000109741.9	4872	26	19126	3	5887	0	3prime_fragment	FALSE	canonical	2	5	junction_6	2.58725289661069	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCTTGGGGTTCACACC	NA	False	NA	-2	True	AATAAA	-17	NA	85644856	85638534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_85639871_85639948_85640137_85642083_85642221_85642308_85642432_85642784_85643015_85643181_85643389_85644355_85644604_85644681
ENSMUSG00000053693.17_6	chr8	-	2770	9	ISM	ENSMUSG00000053693.17	ENSMUST00000109741.9	4872	26	18561	4	5322	-1	3prime_fragment	FALSE	canonical	1	2	junction_8	3.38193731461717	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTCTTGGGGTTCACAC	NA	False	NA	-3	True	AATAAA	-16	NA	85645421	85638535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_85639871_85639948_85640137_85642083_85642221_85642308_85642432_85642784_85643015_85643181_85643389_85644355_85644604_85644681_85644861_85645298
ENSMUSG00000053693.17_8	chr8	-	2869	8	NIC	ENSMUSG00000053693.17	novel	4872	26	NA	NA	5300	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_7	3.54562104171167	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATTCTTGGGGTTCACA	NA	False	NA	-4	True	AATAAA	-15	NA	85645443	85638536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_85640137_85642083_85642221_85642308_85642432_85642784_85643015_85643181_85643389_85644355_85644604_85644681_85644861_85645298
ENSMUSG00000053702.17_1	chr2	-	6153	7	FSM	ENSMUSG00000053702.17	ENSMUST00000028080.12	5780	7	-33	-340	-33	340	multi-exon	FALSE	canonical	0	0	junction_2	1.80277563773199	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTTTGCTGTCACGTGG	NA	False	NA	NA	False	AATAAA	-25	NA	17735887	17348379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_17353682_17355515_17355623_17378995_17379168_17534720_17534829_17594903_17594989_17734179_17734275_17735603
ENSMUSG00000053716.10_0	chr9	+	3232	3	FSM	ENSMUSG00000053716.10	ENSMUST00000172306.3	3213	3	-22	3	-22	0	multi-exon	FALSE	canonical	3	135	junction_1	12	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGAGTCCTGGTGTTCA	NA	False	NA	35	True	AATAAA	-16	NA	106245808	106252920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_106246523_106247899_106248335_106250837
ENSMUSG00000053716.10_3	chr9	+	2515	2	ISM	ENSMUSG00000053716.10	ENSMUST00000172306.3	3213	3	2072	3	-40	0	3prime_fragment	FALSE	canonical	3	159	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGAGTCCTGGTGTTCA	NA	False	NA	35	True	AATAAA	-16	NA	106247902	106252920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_106248335_106250837
ENSMUSG00000053716.10_6	chr9	+	1619	1	ISM	ENSMUSG00000053716.10	ENSMUST00000172306.3	3213	3	5471	3	-516	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGAGTCCTGGTGTTCA	3356	False	NA	35	True	AATAAA	-16	NA	106251301	106252920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_106251300_106252900
ENSMUSG00000053730.16_0	chr4	-	135	1	ISM	ENSMUSG00000053730.16	ENSMUST00000125445.8	1851	10	20305	2	2399	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGCCTGTGTCCTGTGA	8263	False	NA	NA	False	AAAAAG	-19	NA	129570284	129570149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129570100_129570300
ENSMUSG00000053730.16_2	chr4	-	1797	9	FSM	ENSMUSG00000053730.16	ENSMUST00000102588.10	1810	9	10	3	10	-3	multi-exon	FALSE	canonical	2	15	junction_6	5.99869777535091	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAAGCCTGTGTCCTGTG	10002	False	NA	NA	False	AAAAAG	-18	NA	129590621	129570150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586858_129587079_129587678_129587806_129590507
ENSMUSG00000053730.16_3	chr4	-	1402	7	ISM	ENSMUSG00000053730.16	ENSMUST00000102588.10	1810	9	3708	2	3490	-2	3prime_fragment	FALSE	canonical	2	15	junction_6	6.6248689714506	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGCCTGTGTCCTGTGA	8257	False	NA	NA	False	AAAAAG	-19	NA	129586923	129570149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586858
ENSMUSG00000053730.16_8	chr4	-	1820	10	FSM	ENSMUSG00000053730.16	ENSMUST00000125445.8	1851	10	27	4	-25	-4	multi-exon	FALSE	canonical	2	5	junction_7	9.25896295822207	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACAAGCCTGTGTCCTGT	4618	False	NA	NA	False	AAAAAG	-17	NA	129590562	129570151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586428_129586512_129586858_129587079_129587678_129587806_129590507
ENSMUSG00000053746.9_0	chr2	+	949	5	FSM	ENSMUSG00000053746.9	ENSMUST00000066352.6	952	5	0	3	0	-3	multi-exon	FALSE	canonical	3	42	junction_4	3.34477204006491	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGGAAGCTTCCTGTGG	8191	False	NA	3	True	ATTAAA	-13	NA	32665797	32667606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32665908_32666315_32666536_32666718_32666819_32666994_32667041_32667133
ENSMUSG00000053746.9_3	chr2	+	1137	4	FSM	ENSMUSG00000053746.9	ENSMUST00000138214.2	908	4	-84	-145	-5	-3	multi-exon	FALSE	canonical	3	42	junction_3	3.85861230093008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGGAAGCTTCCTGTGG	8186	False	NA	3	True	ATTAAA	-13	NA	32665792	32667606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32665908_32666315_32666819_32666994_32667041_32667133
ENSMUSG00000053754.15_1	chr14	-	3908	17	ISM	ENSMUSG00000053754.15	ENSMUST00000089752.11	8190	37	24229	-3	-320	3	3prime_fragment	FALSE	canonical	3	26	junction_15	9.64992713703062	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTCCTATGTTCTGTTT	NA	False	NA	-6	True	AATAAA	-20	NA	52450800	52435604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019_52450177_52450280_52450481_52450709
ENSMUSG00000053754.15_14	chr14	-	3550	15	ISM	ENSMUSG00000053754.15	ENSMUST00000089752.11	8190	37	24916	1	367	-1	3prime_fragment	FALSE	canonical	3	28	junction_12	8.38517885854535	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATTCTTCCTATGTTCT	NA	False	NA	-10	True	AATAAA	-16	NA	52450113	52435608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019
ENSMUSG00000053754.15_23	chr14	-	8285	37	FSM	ENSMUSG00000053754.15	ENSMUST00000089752.11	8190	37	-97	2	-97	-2	multi-exon	FALSE	canonical	3	26	junction_15	11.1582334103345	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCATTCTTCCTATGTTC	NA	False	NA	-11	True	AATAAA	-15	NA	52475126	52435609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019_52450177_52450280_52450481_52450709_52450907_52451669_52451781_52451925_52452106_52452629_52452798_52453339_52453536_52453698_52453910_52455172_52455429_52455629_52455774_52457053_52457231_52458370_52458615_52458759_52458882_52459938_52460077_52462082_52462167_52463494_52463613_52464069_52464126_52464692_52464762_52464954_52465138_52468894_52469010_52470001_52470388_52472580_52472959_52474186
ENSMUSG00000053754.15_25	chr14	-	1509	5	ISM	ENSMUSG00000053754.15	ENSMUST00000089752.11	8190	37	33599	1	654	-1	3prime_fragment	FALSE	canonical	3	42	junction_3	6.49519052838329	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATTCTTCCTATGTTCT	NA	False	NA	-10	True	AATAAA	-16	NA	52441430	52435608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333
ENSMUSG00000053754.15_29	chr14	-	3368	13	ISM	ENSMUSG00000053754.15	ENSMUST00000089752.11	8190	37	25651	1	1102	-1	3prime_fragment	FALSE	canonical	3	28	junction_12	8.56835262268464	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATTCTTCCTATGTTCT	NA	False	NA	-10	True	AATAAA	-16	NA	52449378	52435608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272
ENSMUSG00000053754.15_36	chr14	-	8512	38	NIC	ENSMUSG00000053754.15	novel	8509	38	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_15	12.4723214376991	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATTCTTCCTATGTTCTG	452	False	NA	-9	True	AATAAA	-17	NA	52495216	52435607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019_52450201_52450280_52450481_52450709_52450907_52451669_52451781_52451925_52452106_52452629_52452798_52453339_52453536_52453698_52453910_52455172_52455429_52455629_52455774_52457053_52457231_52458370_52458615_52458759_52458882_52459938_52460077_52462082_52462167_52463494_52463613_52464069_52464126_52464692_52464762_52464954_52465138_52468894_52469010_52470001_52470388_52472580_52472959_52474186_52475246_52495134
ENSMUSG00000053754.15_4	chr14	-	4382	20	ISM	ENSMUSG00000053754.15	ENSMUST00000089752.11	8190	37	22319	1	673	-1	3prime_fragment	FALSE	canonical	3	26	junction_15	10.0334620202004	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATTCTTCCTATGTTCT	NA	False	NA	-10	True	AATAAA	-16	NA	52452710	52435608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019_52450177_52450280_52450481_52450709_52450907_52451669_52451781_52451925_52452106_52452629
ENSMUSG00000053754.15_5	chr14	-	2329	7	ISM	ENSMUSG00000053754.15	ENSMUST00000089752.11	8190	37	32321	1	-624	-1	3prime_fragment	FALSE	canonical	3	42	junction_3	5.72761342581319	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATTCTTCCTATGTTCT	NA	False	NA	-10	True	AATAAA	-16	NA	52442708	52435608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246
ENSMUSG00000053754.15_52	chr14	-	2373	1	FSM	ENSMUSG00000053754.15	ENSMUST00000199135.2	3329	1	956	0	956	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1444	False	NA	NA	False	NA	NA	NA	52494224	52491851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52491900_52494200
ENSMUSG00000053754.15_55	chr14	-	3827	16	NIC	ENSMUSG00000053754.15	novel	8190	37	NA	NA	3	-8	combination_of_known_junctions	FALSE	canonical	3	12	junction_15	12.2401888148109	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTTTTCCATTCTTCCT	NA	False	NA	-17	True	AATAAA	-9	NA	52450477	52435615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019_52450201_52450280
ENSMUSG00000053754.15_6	chr14	-	8469	38	FSM	ENSMUSG00000053754.15	ENSMUST00000200169.6	8509	38	39	1	-18	-1	multi-exon	FALSE	canonical	3	26	junction_15	11.5591027376411	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATTCTTCCTATGTTCT	470	False	NA	-10	True	AATAAA	-16	NA	52495198	52435608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019_52450177_52450280_52450481_52450709_52450907_52451669_52451781_52451925_52452106_52452629_52452798_52453339_52453536_52453698_52453910_52455172_52455429_52455629_52455774_52457053_52457231_52458370_52458615_52458759_52458882_52459938_52460077_52462082_52462167_52463494_52463613_52464069_52464126_52464692_52464762_52464954_52465138_52468894_52469010_52470001_52470388_52472580_52472959_52474186_52475246_52495134
ENSMUSG00000053754.15_7	chr14	-	8482	38	NIC	ENSMUSG00000053754.15	novel	8509	38	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	19	junction_37	12.0190985102573	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATTCTTCCTATGTTCT	9242	False	NA	-10	True	AATAAA	-16	NA	52481966	52435608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_52436610_52439087_52439205_52439600_52439781_52439960_52440075_52441333_52441637_52441889_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019_52450177_52450280_52450481_52450709_52450907_52451669_52451781_52451925_52452106_52452629_52452798_52453339_52453536_52453698_52453910_52455172_52455429_52455629_52455774_52457053_52457231_52458370_52458615_52458759_52458882_52459938_52460077_52462082_52462167_52463494_52463613_52464069_52464126_52464692_52464762_52464954_52465138_52468894_52469010_52470001_52470388_52472580_52472959_52474186_52475246_52481889
ENSMUSG00000053768.14_0	chr6	-	1504	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	33	13	9	-6	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	560	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAGACTGGCATTTTCTG	NA	False	NA	-23	True	AATAAA	-12	NA	33037162	32769164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
ENSMUSG00000053769.6_1	chr3	+	2378	3	FSM	ENSMUSG00000053769.6	ENSMUST00000066386.6	2394	3	18	-2	18	2	multi-exon	FALSE	canonical	1	7	junction_2	5.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTTAGTGGTTTTATT	8629	False	NA	19	True	ATTAAA	-15	NA	95041416	95046831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95042308_95044935_95045298_95045706
ENSMUSG00000053769.6_2	chr3	+	1454	2	ISM	ENSMUSG00000053769.6	ENSMUST00000066386.6	2394	3	3568	0	3568	0	3prime_fragment	FALSE	canonical	1	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGCTTTAGTGGTTTTA	NA	False	NA	17	True	ATTAAA	-13	NA	95044966	95046829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95045298_95045706
ENSMUSG00000053774.10_0	chr16	+	3318	11	FSM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	3	6992	3	-1140	multi-exon	FALSE	canonical	3	131	junction_8	18.7480665669823	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTTGAGTCAAAGTTCT	8255	False	NA	NA	False	NA	NA	NA	32151077	32205573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32186161_32186228_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
ENSMUSG00000053774.10_1	chr16	+	3247	10	FSM	ENSMUSG00000053774.10	ENSMUST00000232137.2	4384	10	-7	1144	4	-1144	multi-exon	FALSE	canonical	3	7	junction_3	51.2071561357021	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATACCTTGAGTCAAAG	8256	False	NA	NA	False	NA	NA	NA	32151078	32205569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
ENSMUSG00000053774.10_14	chr16	+	2312	3	ISM	ENSMUSG00000053774.10	ENSMUST00000232137.2	4384	10	49134	1144	49134	-1144	3prime_fragment	FALSE	canonical	3	163	junction_2	3	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATACCTTGAGTCAAAG	NA	False	NA	NA	False	NA	NA	NA	32200219	32205569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32200474_32200583_32200664_32203591
ENSMUSG00000053774.10_16	chr16	+	1403	1	ISM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	53096	6992	53085	-1140	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTTGAGTCAAAGTTCT	NA	False	NA	NA	False	NA	NA	NA	32204170	32205573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_32204200_32205600
ENSMUSG00000053799.9_1	chr19	+	2705	22	FSM	ENSMUSG00000053799.9	ENSMUST00000066439.8	3543	22	26	812	-15	-8	multi-exon	TRUE	canonical	3	69	junction_16	11.2298193902402	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACATGTCTCTGCTTG	1895	False	NA	NA	False	AATAAA	-30	NA	37538891	37671695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_37539014_37558830_37559003_37560040_37560089_37560305_37560397_37562159_37562206_37565383_37565589_37566867_37567024_37570640_37570710_37574258_37574343_37576085_37576133_37576264_37576386_37578298_37578371_37579315_37579414_37582109_37582216_37585542_37585653_37587013_37587126_37588006_37588142_37597373_37597554_37628069_37628212_37641830_37641905_37670107_37670221_37671293
ENSMUSG00000053801.19_0	chr7	-	1889	7	FSM	ENSMUSG00000053801.19	ENSMUST00000107723.9	1898	7	1	8	1	-5	multi-exon	FALSE	canonical	3	447	junction_1	34.207292919623	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGCTACAAGTCCTCTG	8635	False	NA	-12	True	AATAAA	-23	NA	45480212	45474658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018
ENSMUSG00000053801.19_7	chr7	-	1771	6	FSM	ENSMUSG00000053801.19	ENSMUST00000209484.2	1783	6	10	2	4	-2	multi-exon	FALSE	canonical	2	14	junction_5	183.663387750526	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTACAAGTCCTCTGAGC	8638	False	NA	-9	True	AATAAA	-26	NA	45480209	45474655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45480018
ENSMUSG00000053819.17_2	chr3	+	4133	19	FSM	ENSMUSG00000053819.17	ENSMUST00000199300.5	5524	19	-25	1416	-16	-1	multi-exon	TRUE	canonical	2	3	junction_9	3.34119443416775	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAATGTGTCCATTTTTAT	NA	False	NA	6	True	AATAAA	-16	NA	126390630	126638559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_126391154_126392714_126392810_126478308_126478369_126523055_126523111_126561162_126561229_126564433_126564507_126574008_126574112_126577603_126577688_126589012_126589108_126590486_126590610_126591350_126591435_126591886_126591930_126595372_126595411_126604287_126604337_126628222_126628299_126631911_126632007_126633785_126634015_126635133_126635223_126636406
ENSMUSG00000053819.17_3	chr3	+	4031	18	FSM	ENSMUSG00000053819.17	ENSMUST00000106400.9	2722	18	-101	-1208	-2	0	multi-exon	FALSE	canonical	1	3	junction_9	3.31714639526393	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTGTCCATTTTTATT	NA	False	NA	7	True	AATAAA	-17	NA	126390644	126638560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_126391154_126392714_126392810_126478308_126478369_126523055_126523111_126561162_126561229_126564433_126564507_126574008_126574112_126577603_126577688_126589012_126589108_126590486_126590610_126591350_126591435_126591886_126591930_126595372_126595411_126604287_126604337_126628222_126628299_126631911_126632007_126633785_126634015_126636406
ENSMUSG00000053819.17_5	chr3	+	2333	19	NIC	ENSMUSG00000053819.17	novel	5524	19	NA	NA	-11	-56	combination_of_known_junctions	TRUE	canonical	0	0	junction_12	3.708931495661	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGACAGTGTGTAAGGA	NA	False	NA	NA	False	ATTAAA	-13	NA	126390635	126636767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_126391154_126392714_126392810_126478308_126478369_126523055_126523111_126561162_126561229_126564433_126564507_126574008_126574112_126577603_126577688_126589012_126589108_126590486_126590610_126591350_126591435_126591886_126591930_126595375_126595411_126604287_126604337_126628222_126628299_126631911_126632007_126633785_126634015_126635133_126635223_126636406
ENSMUSG00000053819.17_7	chr3	+	1832	1	ISM	ENSMUSG00000053819.17	ENSMUST00000106402.8	4180	20	246127	4	35916	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAATGTGTCCATTTTTA	NA	False	NA	5	True	AATAAA	-15	NA	126636726	126638558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_126636700_126638600
ENSMUSG00000053838.15_0	chr11	-	3394	6	FSM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	234	299	234	-4	multi-exon	FALSE	canonical	3	343	junction_5	15.4090882274066	771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCAGTTCTGGTTCTGTCT	9692	False	NA	-10	True	AATAAA	-10	NA	6150181	6055989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153_6143477_6149942
ENSMUSG00000053838.15_1	chr11	-	3009	5	ISM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	7089	295	150	0	3prime_fragment	FALSE	canonical	3	345	junction_2	14.9227175809234	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTGGTTCTGTCTGTGA	NA	False	NA	-6	True	AATAAA	-14	NA	6143326	6055985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153
ENSMUSG00000053838.15_4	chr11	-	1807	1	ISM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	92623	295	11617	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTGGTTCTGTCTGTGA	8611	False	NA	-6	True	AATAAA	-14	NA	6057792	6055985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_6056000_6057800
ENSMUSG00000053838.15_5	chr11	-	2556	2	ISM	ENSMUSG00000053838.15	ENSMUST00000109805.8	2635	3	5977	4	5977	-4	3prime_fragment	FALSE	canonical	3	350	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCAGTTCTGGTTCTGTCT	2971	False	NA	-10	True	AATAAA	-10	NA	6063432	6055989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_6058356_6063242
ENSMUSG00000053841.16_1	chr4	-	2311	1	ISM	ENSMUSG00000053841.16	ENSMUST00000046425.16	4569	11	12671	6	12246	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGTATCTCAGCCAATCG	NA	False	NA	-11	True	ATTAAA	-16	NA	129522187	129519876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129519900_129522200
ENSMUSG00000053841.16_16	chr4	-	4198	9	ISM	ENSMUSG00000053841.16	ENSMUST00000084264.12	4847	10	1336	1	1171	-1	3prime_fragment	FALSE	canonical	3	289	junction_1	26.3818119165458	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGTATCTCAGCCAATCG	9456	False	NA	-11	True	ATTAAA	-16	NA	129533262	129519876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021
ENSMUSG00000053841.16_4	chr4	-	4518	11	FSM	ENSMUSG00000053841.16	ENSMUST00000046425.16	4569	11	44	7	-43	-2	multi-exon	FALSE	canonical	3	279	junction_10	28.2349074728429	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTGTATCTCAGCCAATC	7904	False	NA	-12	True	ATTAAA	-15	NA	129534814	129519877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
ENSMUSG00000053841.16_5	chr4	-	4745	10	NIC	ENSMUSG00000053841.16	novel	4569	11	NA	NA	-43	-11	intron_retention	FALSE	canonical	3	279	junction_9	29.6048044148994	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTTACCTGTATCT	7904	False	NA	-21	True	ATTAAA	-6	NA	129534814	129519886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
ENSMUSG00000053841.16_9	chr4	-	4709	10	FSM	ENSMUSG00000053841.16	ENSMUST00000084264.12	4847	10	135	3	-30	-3	multi-exon	FALSE	canonical	3	289	junction_1	24.9225962224873	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCTGTATCTCAGCCAAT	8255	False	NA	-13	True	ATTAAA	-14	NA	129534463	129519878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048
ENSMUSG00000053846.6_0	chr18	-	3779	10	FSM	ENSMUSG00000053846.6	ENSMUST00000066532.5	3787	10	4	4	3	-4	multi-exon	TRUE	canonical	1	2	junction_4	1.89215404065849	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTCAGTTGTCCTGTAA	NA	False	NA	NA	False	NA	NA	NA	75094330	75072396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_75074410_75076410_75076516_75078874_75079094_75080076_75080198_75081043_75081287_75082128_75082351_75087248_75087361_75088489_75088670_75090268_75090451_75093948
ENSMUSG00000053856.8_0	chr5	+	2054	5	NIC	ENSMUSG00000053856.8	novel	1565	6	NA	NA	1	-2	intron_retention	FALSE	canonical	3	16	junction_4	4.32290411644765	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCCAGTGTGTGTGGGAC	NA	False	NA	3	True	AATAAA	-15	NA	31265663	31269868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31265766_31266230_31267053_31267521_31267664_31268456_31268524_31268947
ENSMUSG00000053856.8_1	chr5	+	2500	4	NIC	ENSMUSG00000053856.8	novel	1565	6	NA	NA	24	-2	intron_retention	FALSE	canonical	3	16	junction_3	4.98887651569859	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCCAGTGTGTGTGGGAC	NA	False	NA	3	True	AATAAA	-15	NA	31265686	31269868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31265766_31266230_31267664_31268456_31268524_31268947
ENSMUSG00000053856.8_2	chr5	+	1541	6	FSM	ENSMUSG00000053856.8	ENSMUST00000066544.5	1565	6	22	2	22	-2	multi-exon	FALSE	canonical	3	10	junction_2	5.93295878967653	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCCAGTGTGTGTGGGAC	NA	False	NA	3	True	AATAAA	-15	NA	31265684	31269868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31265766_31266230_31266347_31266838_31267053_31267521_31267664_31268456_31268524_31268947
ENSMUSG00000053856.8_3	chr5	+	1325	5	FSM	ENSMUSG00000053856.8	ENSMUST00000202760.4	670	5	26	-681	24	-2	multi-exon	FALSE	canonical	3	9	junction_2	6.86931583201704	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCCAGTGTGTGTGGGAC	NA	False	NA	3	True	AATAAA	-15	NA	31265686	31269868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31265766_31266230_31266347_31267521_31267664_31268456_31268524_31268947
ENSMUSG00000053870.8_10	chr3	-	3683	4	FSM	ENSMUSG00000053870.8	ENSMUST00000194095.2	875	4	-13	-2795	-13	-6	multi-exon	FALSE	canonical	3	7	junction_3	10.0332779621949	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAAGTAGAAATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	154798847	154790560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_154793707_154795748_154795842_154797027_154797196_154798571
ENSMUSG00000053870.8_2	chr3	-	3476	4	FSM	ENSMUSG00000053870.8	ENSMUST00000066568.6	3518	4	38	4	3	-4	multi-exon	FALSE	canonical	3	25	junction_3	2.16024689946929	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTAGAAATTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	154799002	154790558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_154793707_154795748_154795842_154797027_154797196_154798935
ENSMUSG00000053870.8_8	chr3	-	2220	1	ISM	ENSMUSG00000053870.8	ENSMUST00000066568.6	3518	4	6263	3	3379	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAGAAATTTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	154792777	154790557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_154790600_154792800
ENSMUSG00000053877.13_0	chr7	+	2010	10	FSM	ENSMUSG00000053877.13	ENSMUST00000188124.7	2048	10	37	1	-7	-1	multi-exon	FALSE	canonical	3	18	junction_9	13.723009424114	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTTCAGTTATTGAGTAT	NA	False	NA	NA	False	AATAAA	-18	NA	127111191	127128493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128309
ENSMUSG00000053877.13_10	chr7	+	10644	33	NIC	ENSMUSG00000053877.13	novel	9633	31	NA	NA	23	-7	intron_retention	FALSE	canonical	3	15	junction_20	13.5775765855877	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGCATCCGTGTAAGGAG	NA	False	NA	NA	False	AATAAA	-13	NA	127111221	127160384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128309_127128397_127129354_127129532_127129611_127129971_127130065_127130244_127130506_127130644_127130891_127131062_127131198_127131392_127133719_127133857_127133946_127134134_127137172_127137343_127137674_127137941_127138120_127138409_127138928_127139094_127139827_127140095_127140413_127141880_127148311_127148578_127148704_127148908_127151430_127151601_127151739_127151937_127152033_127152149_127152346_127152467_127156579_127156781_127156937_127157022_127157139
ENSMUSG00000053877.13_14	chr7	+	10529	33	NIC	ENSMUSG00000053877.13	novel	9633	31	NA	NA	-3	-5	intron_retention	FALSE	canonical	2	5	junction_1	13.3941160122645	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATCCGTGTAAGGAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	127111633	127160386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127111803_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128306_127128397_127129354_127129532_127129611_127129971_127130065_127130244_127130506_127130644_127130891_127131062_127131198_127131392_127133719_127133857_127133946_127134134_127137172_127137343_127137674_127137941_127138120_127138409_127138928_127139094_127139827_127140095_127140413_127141880_127148311_127148578_127148704_127148908_127151430_127151601_127151739_127151937_127152033_127152149_127152346_127152467_127156579_127156781_127156937_127157022_127157139
ENSMUSG00000053877.13_19	chr7	+	140	1	ISM	ENSMUSG00000053877.13	ENSMUST00000185401.7	2904	8	14808	110	-6969	-110	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTTAGATATAATAATAAAG	NA	False	NA	NA	False	NA	NA	NA	127125962	127126102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127126000_127126100
ENSMUSG00000053877.13_2	chr7	+	1797	4	ISM	ENSMUSG00000053877.13	ENSMUST00000189136.7	1960	6	23	2110	-2	758	5prime_fragment	FALSE	canonical	3	58	junction_2	2.05480466765633	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCATATTTCTTCTTCT	NA	False	NA	NA	False	AATAAA	-8	NA	127111196	127119899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752
ENSMUSG00000053877.13_26	chr7	+	3521	3	ISM	ENSMUSG00000107023.3	ENSMUST00000189629.5	12746	31	37835	5840	-2666	-1990	internal_fragment	FALSE	canonical	3	23	junction_1	5	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATCCGTGTAAGGAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	127156590	127160386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127156781_127156937_127157022_127157139
ENSMUSG00000053877.13_27	chr7	+	1916	1	ISM	ENSMUSG00000053877.13	ENSMUST00000187040.7	10654	34	46281	5	25539	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATCCGTGTAAGGAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	127158470	127160386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127158500_127160400
ENSMUSG00000053877.13_5	chr7	+	2013	10	NIC	ENSMUSG00000053877.13	novel	2048	10	NA	NA	-7	-1	intron_retention	FALSE	canonical	3	20	junction_9	13.2282899242868	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTTCAGTTATTGAGTAT	NA	False	NA	NA	False	AATAAA	-18	NA	127111191	127128493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128306
ENSMUSG00000053877.13_6	chr7	+	2458	8	FSM	ENSMUSG00000053877.13	ENSMUST00000185401.7	2904	8	45	401	1	-401	multi-exon	FALSE	canonical	3	43	junction_5	6.55588223176215	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGCTTGTGTAGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	127111199	127125811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802
ENSMUSG00000053886.5_0	chr8	+	2599	9	FSM	ENSMUSG00000053886.5	ENSMUST00000066594.4	2718	9	121	-2	121	2	multi-exon	FALSE	canonical	3	24	junction_7	6.37867541108654	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGTTGCCTTGGTCATG	NA	False	NA	19	True	NA	NA	NA	68729339	68800348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_68729525_68734684_68735064_68746954_68747112_68749305_68749478_68781903_68782013_68783686_68783889_68787716_68787848_68798604_68798826_68799305
ENSMUSG00000053886.5_8	chr8	+	1031	1	NIC	ENSMUSG00000053886.5	novel	1600	8	NA	NA	64359	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGTTGCCTTGGTCATG	5339	False	NA	19	True	NA	NA	NA	68799317	68800348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_68799300_68800300
ENSMUSG00000053898.13_2	chr7	+	1141	10	FSM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	123	3	-9	-3	multi-exon	TRUE	canonical	3	645	junction_5	36.3137901908447	370	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCGGGGTGTCTTTACTG	NA	False	NA	11	True	AATAAA	-9	NA	28524764	28531669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
ENSMUSG00000053907.11_1	chr6	-	3385	8	FSM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	1	1	1	0	multi-exon	FALSE	canonical	3	761	junction_3	40.6724095420862	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGTGTCTATTACTTG	NA	False	NA	-12	True	AATAAA	-16	NA	72416538	72409782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUSG00000053907.11_2	chr6	-	1535	1	ISM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	5222	1	657	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGTGTCTATTACTTG	NA	False	NA	-12	True	AATAAA	-16	NA	72411317	72409782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_72409800_72411300
ENSMUSG00000053907.11_4	chr6	-	2799	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	3	2	1	-1	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	1041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAACTGTGTCTATTACTT	NA	False	NA	-13	True	AATAAA	-15	NA	72416538	72409783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUSG00000053909.9_0	chrX	+	710	3	FSM	ENSMUSG00000053909.9	ENSMUST00000115150.4	763	3	46	7	46	-7	multi-exon	FALSE	canonical	2	4	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCAAATTTTTTGTTTGTG	NA	False	NA	NA	False	AATAAA	-11	NA	37155397	37160561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_37155824_37158275_37158322_37160323
ENSMUSG00000053916.5_0	chr2	-	1449	3	FSM	ENSMUSG00000053916.5	ENSMUST00000140124.2	380	3	2	-1071	2	-1	multi-exon	FALSE	canonical	1	1	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTTTTAGAGTGATCTTG	NA	False	NA	-2	True	ATTAAA	-37	NA	150881280	150871605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_150872837_150880535_150880630_150881156
ENSMUSG00000053916.5_1	chr2	-	1346	2	FSM	ENSMUSG00000053916.5	ENSMUST00000066640.5	1394	2	36	12	0	-12	multi-exon	FALSE	canonical	3	184	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTTTTCATCCTTTTA	NA	False	NA	-13	True	ATTAAA	-26	NA	150881282	150871616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_150872837_150881156
ENSMUSG00000053916.5_3	chr2	-	763	1	ISM	ENSMUSG00000053916.5	ENSMUST00000066640.5	1394	2	8939	12	8903	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTTTTCATCCTTTTA	2695	False	NA	-13	True	ATTAAA	-26	NA	150872379	150871616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_150871600_150872400
ENSMUSG00000053929.18_0	chr15	-	1828	4	NIC	ENSMUSG00000053929.18	novel	3959	5	NA	NA	-9	1159	combination_of_known_junctions	TRUE	canonical	3	230	junction_1	231.34534070663	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTCTGTTTTGTTGGAGG	NA	False	NA	-2	True	ATTAAA	-19	NA	76541129	76529967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76530775_76532298_76532511_76533140_76533380_76540559
ENSMUSG00000053929.18_7	chr15	-	1854	4	FSM	ENSMUSG00000053929.18	ENSMUST00000176274.2	1854	4	-9	9	-9	0	multi-exon	FALSE	canonical	3	306	junction_1	196.445638508186	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGTATCCTGTCTGTG	NA	False	NA	-10	True	AATAAA	-15	NA	76541129	76531135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76531969_76532298_76532511_76533140_76533380_76540559
ENSMUSG00000053929.18_8	chr15	-	1781	4	FSM	ENSMUSG00000053929.18	ENSMUST00000229524.2	1513	4	-213	-55	-9	0	multi-exon	FALSE	canonical	3	120	junction_1	282.269768523344	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGTATCCTGTCTGTG	NA	False	NA	-10	True	AATAAA	-15	NA	76541129	76531135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76531896_76532298_76532511_76533140_76533380_76540559
ENSMUSG00000053931.12_0	chr3	+	2011	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	24	14	-24	-6	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	6354	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTCATATGAACCACAG	NA	False	NA	13	True	AATAAA	-13	NA	121220169	121251842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
ENSMUSG00000053950.11_2	chr18	-	4962	4	FSM	ENSMUSG00000053950.11	ENSMUST00000066743.11	5012	4	5	45	5	-45	multi-exon	FALSE	canonical	3	132	junction_3	18.0800688297608	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACCACTGAAAATAAAACT	5941	False	NA	42	True	ATTAAA	-8	NA	80194692	80169570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_80174210_80180698_80180789_80185863_80185985_80194580
ENSMUSG00000053950.11_3	chr18	-	3084	1	ISM	ENSMUSG00000053950.11	ENSMUST00000066743.11	5012	4	22048	40	22048	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTGAAAATAAAACTGTTCA	283	False	NA	47	True	ATTAAA	-13	NA	80172649	80169565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_80169600_80172600
ENSMUSG00000053950.11_4	chr18	-	4969	4	NNC	ENSMUSG00000053950.11	novel	5012	4	NA	NA	5	-42	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_3	66.5131565932636	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCACTGAAAATAAAACTGTT	5941	False	NA	45	True	ATTAAA	-11	NA	80194692	80169567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_80174210_80180698_80180789_80185863_80185985_80194576
ENSMUSG00000053965.11_0	chr3	+	4367	21	FSM	ENSMUSG00000053965.11	ENSMUST00000066728.10	6939	21	102	2470	102	-2468	multi-exon	FALSE	canonical	1	1	junction_8	2.13541565040626	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCTCTCTGTTTAAAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	122522697	122650553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_122523017_122541537_122542127_122554526_122554617_122568201_122568274_122569904_122569995_122572583_122572722_122575215_122575284_122587908_122588018_122588882_122588971_122596680_122596857_122598198_122598259_122611569_122611717_122616704_122616831_122618563_122618659_122629201_122629290_122633190_122633292_122634619_122634698_122636693_122636758_122645298_122645374_122646186_122646271_122648843
ENSMUSG00000053965.11_3	chr3	+	2799	20	ISM	ENSMUSG00000053965.11	ENSMUST00000066728.10	6939	21	72	6641	72	-6639	5prime_fragment	FALSE	canonical	1	1	junction_8	2.08941402539781	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATAATAATAATTA	NA	False	NA	NA	False	NA	NA	NA	122522667	122646382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_122523017_122541537_122542127_122554526_122554617_122568201_122568274_122569904_122569995_122572583_122572722_122575215_122575284_122587908_122588018_122588882_122588971_122596680_122596857_122598198_122598259_122611569_122611717_122616704_122616831_122618563_122618659_122629201_122629290_122633190_122633292_122634619_122634698_122636693_122636758_122645298_122645374_122646186
ENSMUSG00000053965.11_8	chr3	+	2778	1	ISM	ENSMUSG00000053965.11	ENSMUST00000066728.10	6939	21	127642	8	61355	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGAGAATGTGTGTGGTGT	NA	False	NA	NA	False	AATAAA	-8	NA	122650237	122653015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_122650200_122653000
ENSMUSG00000053985.11_1	chr7	-	1275	1	ISM	ENSMUSG00000053985.11	ENSMUST00000207873.2	3411	5	13747	0	7101	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATATGCCCAGATTGGTA	NA	False	NA	NA	False	AATAAA	-40	NA	29737058	29735783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_29735800_29737100
ENSMUSG00000053985.11_3	chr7	-	2137	6	NIC	ENSMUSG00000053985.11	novel	3411	5	NA	NA	4	367	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	3.65513337649941	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTTCTATAGATCAAG	NA	False	NA	NA	False	NA	NA	NA	29750794	29737110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29738842_29742954_29743082_29744144_29744234_29745163_29745265_29749864_29749929_29750769
ENSMUSG00000053985.11_4	chr7	-	2744	5	NIC	ENSMUSG00000053985.11	novel	3411	5	NA	NA	873	-160	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	3.67423461417477	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACATCTCTGCATTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	29749925	29736475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29738842_29742954_29743082_29744144_29744234_29745163_29745265_29749864
ENSMUSG00000053985.11_5	chr7	-	2785	6	NNC	ENSMUSG00000053985.11	novel	3411	5	NA	NA	-1	-156	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	6.15142259969188	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTCTGCATTTATAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	29750806	29736471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_29738842_29742954_29743082_29744144_29744234_29745163_29745265_29749864_29749926_29750769
ENSMUSG00000054000.6_0	chr4	-	1242	1	FSM	ENSMUSG00000054000.6	ENSMUST00000066774.6	1374	1	122	10	122	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCAAAAATTTCCATGAC	NA	False	NA	-5	True	AATAAA	-12	NA	93223626	93222384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_93222400_93223600
ENSMUSG00000054003.14_0	chr12	+	4350	35	NIC	ENSMUSG00000054003.14	novel	4809	36	NA	NA	-15	84	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	3.36170166170107	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAAGTTGTTCTGAAAGA	NA	False	NA	NA	False	ATTAAA	-8	NA	111937977	112034868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111938297_111951432_111951540_111958895_111958994_111960141_111960364_111960877_111961001_111963220_111963302_111964231_111964397_111968157_111968259_111973945_111974011_111979699_111979755_111979915_111980001_111980875_111980934_111982291_111982397_111989675_111989774_111991095_111991228_111991942_111992109_111992208_111992273_111992344_111992409_111992686_111992732_111997621_111997739_111999112_111999221_112001015_112001117_112002787_112002962_112005737_112005850_112006858_112007072_112008095_112008186_112009119_112009381_112010719_112010876_112011233_112011305_112012589_112012700_112013389_112013487_112018301_112018441_112029934_112030054_112034036_112034110_112034612
ENSMUSG00000054003.14_1	chr12	+	4799	36	FSM	ENSMUSG00000054003.14	ENSMUST00000079009.11	4809	36	1	9	1	-9	multi-exon	FALSE	canonical	1	1	junction_4	3.2893147974517	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTCTGATTATTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	111937993	112035279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111938297_111951432_111951540_111958895_111958994_111960141_111960364_111960877_111961001_111963220_111963302_111964231_111964397_111968157_111968259_111973945_111974011_111979699_111979755_111979915_111980001_111980875_111980934_111982291_111982397_111989675_111989774_111991095_111991228_111991942_111992109_111992208_111992273_111992344_111992409_111992686_111992732_111993528_111993583_111997621_111997739_111999112_111999221_112001015_112001117_112002787_112002962_112005737_112005850_112006858_112007072_112008095_112008186_112009119_112009381_112010719_112010876_112011233_112011305_112012589_112012700_112013389_112013487_112018301_112018441_112029934_112030054_112034036_112034110_112034612
ENSMUSG00000054003.14_6	chr12	+	3645	29	ISM	ENSMUSG00000054003.14	ENSMUST00000079009.11	4809	36	30190	39	7991	-39	3prime_fragment	FALSE	canonical	1	1	junction_20	2.92312210780577	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGGGAAACAATAAAGGCA	1370	False	NA	NA	False	NA	NA	NA	111968182	112035249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_111968259_111973945_111974011_111979699_111979755_111979915_111980001_111980875_111980934_111982291_111982397_111989675_111989774_111991095_111991228_111991942_111992109_111992208_111992273_111992344_111992409_111992686_111992732_111993528_111993583_111997621_111997739_111999112_111999221_112001015_112001117_112002787_112002962_112005737_112005850_112006858_112007072_112008095_112008186_112009119_112009381_112010719_112010876_112011233_112011305_112012589_112012700_112013389_112013487_112018301_112018441_112029934_112030054_112034036_112034110_112034612
ENSMUSG00000054008.10_0	chr18	-	7960	15	FSM	ENSMUSG00000054008.10	ENSMUST00000237783.2	6478	15	-14	-1468	-14	-1	multi-exon	FALSE	canonical	2	17	junction_9	9.29367790380062	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACGTGGGTCTTGTTCTTG	NA	False	NA	-8	True	AATAAA	-17	NA	60881736	60817566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_60822437_60823035_60823139_60824249_60824360_60825000_60825172_60828407_60828583_60830138_60830263_60831510_60831608_60832579_60832763_60833443_60833573_60835844_60836031_60836808_60836964_60838147_60838236_60840672_60841168_60845794_60846705_60881572
ENSMUSG00000054008.10_1	chr18	-	3266	1	ISM	ENSMUSG00000054008.10	ENSMUST00000235795.2	5262	3	39803	1	9312	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACGTGGGTCTTGTTCTTG	2154	False	NA	-8	True	AATAAA	-17	NA	60820832	60817566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_60817600_60820800
ENSMUSG00000054008.10_2	chr18	-	7938	15	NIC	ENSMUSG00000054008.10	novel	6478	15	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	11.9514323281303	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACGTGGGTCTTGTTCTTG	NA	False	NA	-8	True	AATAAA	-17	NA	60866221	60817566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_60822437_60823035_60823139_60824249_60824360_60825000_60825172_60828407_60828583_60830138_60830263_60831510_60831608_60832579_60832763_60833443_60833573_60835844_60836031_60836808_60836964_60838147_60838236_60840672_60841168_60845794_60846705_60866079
ENSMUSG00000054008.10_3	chr18	-	7926	15	NIC	ENSMUSG00000054008.10	novel	6478	15	NA	NA	-25	-2	combination_of_known_junctions	FALSE	canonical	2	11	junction_14	10.0957153975216	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACACGTGGGTCTTGTTCTT	NA	False	NA	-9	True	AATAAA	-16	NA	60881513	60817567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_60822437_60823035_60823139_60824249_60824360_60825000_60825172_60828407_60828583_60830138_60830263_60831510_60831608_60832579_60832763_60833443_60833573_60835844_60836031_60836808_60836964_60838147_60838236_60840672_60841168_60845794_60846705_60881382
ENSMUSG00000054008.10_5	chr18	-	5589	6	ISM	ENSMUSG00000054008.10	ENSMUST00000169273.2	6070	14	16163	-1483	-154	-1	3prime_fragment	FALSE	canonical	3	24	junction_2	4.14728827066554	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACGTGGGTCTTGTTCTTG	NA	False	NA	-8	True	AATAAA	-17	NA	60830298	60817566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_60822437_60823035_60823139_60824249_60824360_60825000_60825172_60828407_60828583_60830138
ENSMUSG00000054013.7_1	chr12	-	2356	4	FSM	ENSMUSG00000054013.7	ENSMUST00000066791.7	2380	4	21	3	21	-3	multi-exon	FALSE	canonical	1	1	junction_3	2.16024689946929	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATGCTGTGTGGATGAG	NA	False	NA	-13	True	AATAAA	-17	NA	112477585	112466625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_112468357_112469675_112469755_112470967_112471106_112477177
ENSMUSG00000054013.7_2	chr12	-	685	1	ISM	ENSMUSG00000054013.7	ENSMUST00000066791.7	2380	4	10298	1	10298	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTGTGTGGATGAGGA	NA	False	NA	-11	True	AATAAA	-19	NA	112467308	112466623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_112466600_112467300
ENSMUSG00000054021.7_1	chr13	+	1394	9	FSM	ENSMUSG00000054021.7	ENSMUST00000223194.2	1398	9	2	2	2	-1	multi-exon	FALSE	canonical	3	17	junction_1	63.0811729044411	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTTATTTTTTTGTACT	NA	False	NA	8	True	ATTAAA	-20	NA	43518983	43548677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_43519021_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
ENSMUSG00000054021.7_4	chr13	+	1450	9	NIC	ENSMUSG00000054021.7	novel	1579	9	NA	NA	9	-2	combination_of_known_junctions	FALSE	canonical	3	172	junction_8	20.7710736361893	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTTATTTTTTTGTAC	NA	False	NA	7	True	ATTAAA	-19	NA	43519122	43548676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_43519217_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
ENSMUSG00000054021.7_6	chr13	+	2432	8	ISM	ENSMUSG00000054021.7	ENSMUST00000220576.2	1579	9	-3	586	-3	-583	intron_retention	FALSE	canonical	3	180	junction_1	20.0244748204974	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGATTCTGGTTTGTTGC	NA	False	NA	NA	False	NA	NA	NA	43519136	43540549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_43519217_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973
ENSMUSG00000054027.9_0	chr10	+	5913	14	FSM	ENSMUSG00000054027.9	ENSMUST00000099396.3	5952	14	30	9	30	-9	multi-exon	FALSE	canonical	3	23	junction_13	8.52632540148867	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCTGGTATGTGTGTTA	NA	False	NA	3	True	AATAAA	-13	NA	86614898	86674244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_86615176_86640644_86640830_86647393_86647469_86648188_86648245_86651717_86651809_86652816_86652955_86656070_86656132_86656531_86656635_86656773_86656876_86658927_86659010_86660050_86660138_86661018_86661160_86667563_86667629_86669794
ENSMUSG00000054027.9_12	chr10	+	2677	1	ISM	ENSMUSG00000054027.9	ENSMUST00000099396.3	5952	14	56699	9	10601	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCTGGTATGTGTGTTA	NA	False	NA	3	True	AATAAA	-13	NA	86671567	86674244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_86671600_86674200
ENSMUSG00000054046.8_12	chr7	+	1950	5	ISM	ENSMUSG00000054046.8	ENSMUST00000066834.8	1809	6	931	15	99	-15	3prime_fragment	FALSE	canonical	3	49	junction_2	9.8488578017961	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTTCCTTGCTTCCTTTT	NA	False	NA	2	True	CATAAA	-6	NA	43362921	43376943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
ENSMUSG00000054046.8_13	chr7	+	1416	2	ISM	ENSMUSG00000054046.8	ENSMUST00000066834.8	1809	6	10104	789	7712	-789	3prime_fragment	FALSE	canonical	3	75	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCCGCCTCCCTCCCCTA	NA	False	NA	-1	True	AATAAA	-12	NA	43372094	43376169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43373316_43375974
ENSMUSG00000054046.8_16	chr7	+	993	5	NIC	ENSMUSG00000054046.8	novel	1809	6	NA	NA	-52	-777	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	27.4988636128841	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCCTACTGTGCCTCTCT	NA	False	NA	11	True	AATAAA	-24	NA	43361938	43376181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_43362129_43370390_43370581_43370691_43370961_43373178_43373316_43375974
ENSMUSG00000054046.8_2	chr7	+	1774	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-263	-23	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	15.8694675399019	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCACAACTTCCTTGC	NA	False	NA	-6	True	NA	NA	NA	43362559	43376935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_43362686_43363215_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
ENSMUSG00000054046.8_3	chr7	+	1790	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-266	-23	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	19.3245957266899	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCACAACTTCCTTGC	NA	False	NA	-6	True	NA	NA	NA	43362556	43376935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_43362686_43363202_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
ENSMUSG00000054051.8_16	chr14	+	2833	5	ISM	ENSMUSG00000054051.8	ENSMUST00000228549.2	2899	14	17028	-1387	17028	1387	3prime_fragment	FALSE	canonical	3	8	junction_1	4.86698058348295	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATACTGGTTTTTCCTG	NA	False	NA	1	True	AATAAA	-7	NA	32291559	32300448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_32291616_32291695_32292389_32296762_32296968_32297710_32297784_32298642
ENSMUSG00000054051.8_17	chr14	+	2534	4	ISM	ENSMUSG00000054051.8	ENSMUST00000228549.2	2899	14	17407	-1387	17407	1387	3prime_fragment	FALSE	canonical	3	11	junction_3	4.10960933531265	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATACTGGTTTTTCCTG	NA	False	NA	1	True	AATAAA	-7	NA	32291938	32300448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_32292389_32296762_32296968_32297710_32297784_32298642
ENSMUSG00000054051.8_18	chr14	+	960	1	ISM	ENSMUSG00000054051.8	ENSMUST00000066807.8	8423	21	64017	2493	24963	1393	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTTTTTCCTGTATTGT	NA	False	NA	7	True	AATAAA	-13	NA	32299494	32300454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_32299500_32300500
ENSMUSG00000054051.8_19	chr14	+	5930	21	FSM	ENSMUSG00000054051.8	ENSMUST00000066807.8	8423	21	-10	2503	-10	1383	multi-exon	FALSE	canonical	2	7	junction_11	30.0559478306707	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAAATACTGGTTTTT	NA	False	NA	-3	True	AATAAA	-3	NA	32235467	32300444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_32235557_32238903_32239336_32240899_32241021_32242904_32243017_32248105_32248836_32263182_32263312_32268701_32268861_32274531_32274668_32279795_32279967_32280384_32280562_32282665_32282783_32284512_32284609_32288199_32288416_32288740_32288852_32289464_32289585_32289943_32290039_32291469_32291616_32291695_32292389_32296762_32296968_32297710_32297784_32298642
ENSMUSG00000054051.8_22	chr14	+	3673	11	ISM	ENSMUSG00000054051.8	ENSMUST00000066807.8	8423	21	47189	2503	8135	1383	3prime_fragment	FALSE	canonical	2	7	junction_1	4.31856457633784	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAAATACTGGTTTTT	NA	False	NA	-3	True	AATAAA	-3	NA	32282666	32300444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_32282783_32284512_32284609_32288199_32288416_32288740_32288852_32289464_32289585_32289943_32290039_32291469_32291616_32291695_32292389_32296762_32296968_32297710_32297784_32298642
ENSMUSG00000054051.8_24	chr14	+	1854	2	ISM	ENSMUSG00000054051.8	ENSMUST00000228549.2	2899	14	23191	-1374	23191	1374	3prime_fragment	FALSE	canonical	3	11	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAGATTTAAAAATA	NA	False	NA	-12	True	ATTAAA	-17	NA	32297722	32300435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_32297784_32298642
ENSMUSG00000054051.8_6	chr14	+	5928	21	NNC	ENSMUSG00000054051.8	novel	8423	21	NA	NA	0	1387	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	29.9439476355406	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATACTGGTTTTTCCTG	NA	False	NA	1	True	AATAAA	-7	NA	32235477	32300448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_32235557_32238899_32239336_32240899_32241021_32242904_32243017_32248105_32248836_32263182_32263312_32268701_32268861_32274531_32274668_32279795_32279967_32280384_32280562_32282665_32282783_32284512_32284609_32288199_32288416_32288740_32288852_32289464_32289585_32289943_32290039_32291469_32291616_32291695_32292389_32296762_32296968_32297710_32297784_32298642
ENSMUSG00000054051.8_8	chr14	+	5172	17	ISM	ENSMUSG00000054051.8	ENSMUST00000066807.8	8423	21	12636	2499	-9325	1387	3prime_fragment	FALSE	canonical	2	7	junction_7	32.3288159967234	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATACTGGTTTTTCCTG	NA	False	NA	1	True	AATAAA	-7	NA	32248113	32300448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_32248836_32263182_32263312_32268701_32268861_32274531_32274668_32279795_32279967_32280384_32280562_32282665_32282783_32284512_32284609_32288199_32288416_32288740_32288852_32289464_32289585_32289943_32290039_32291469_32291616_32291695_32292389_32296762_32296968_32297710_32297784_32298642
ENSMUSG00000054057.3_1	chr2	-	2268	1	ISM	ENSMUSG00000054057.3	ENSMUST00000066163.3	3217	2	10272	5	1295	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAATAAAATAGCCTACT	NA	False	NA	-28	True	ATTAAA	-12	NA	18032276	18030008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_18030000_18032300
ENSMUSG00000054057.3_2	chr2	-	3379	2	NNC	ENSMUSG00000054057.3	novel	3217	2	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAATAAAATAGCCTACT	NA	False	NA	-28	True	ATTAAA	-12	NA	18033568	18030008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_18033050_18033230
ENSMUSG00000054057.3_4	chr2	-	3155	2	FSM	ENSMUSG00000054057.3	ENSMUST00000135980.2	363	2	-64	-2728	47	-5	multi-exon	FALSE	canonical	2	4	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAATAAAATAGCCTACT	NA	False	NA	-28	True	ATTAAA	-12	NA	18033635	18030008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_18033050_18033521
ENSMUSG00000054065.13_0	chr7	+	2985	14	FSM	ENSMUSG00000054065.13	ENSMUST00000106039.9	2919	14	-72	6	-72	-3	multi-exon	TRUE	canonical	0	0	junction_4	30.8055554814503	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAGCCCCAGCTCCGTG	NA	False	NA	13	True	ATTAAA	-11	NA	140658058	140670417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140658348_140659818_140660015_140662254_140662335_140662467_140663100_140663175_140663300_140663967_140664173_140667548_140667724_140668196_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
ENSMUSG00000054065.13_14	chr7	+	2377	1	NIC	ENSMUSG00000054065.13	novel	2919	14	NA	NA	-18	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAGCCCCAGCTCCGTG	596	False	NA	13	True	ATTAAA	-11	NA	140668040	140670417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140668000_140670400
ENSMUSG00000054065.13_2	chr7	+	2850	13	FSM	ENSMUSG00000054065.13	ENSMUST00000066873.5	2848	13	-5	3	-5	0	multi-exon	FALSE	canonical	0	0	junction_3	30.7431112428279	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCCAGCTCCGTGTGT	NA	False	NA	16	True	ATTAAA	-14	NA	140659667	140670420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140660015_140662254_140662335_140662467_140663100_140663175_140663300_140663967_140664173_140667548_140667724_140668196_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
ENSMUSG00000054065.13_4	chr7	+	1417	7	FSM	ENSMUSG00000054065.13	ENSMUST00000160403.8	1425	7	8	0	8	0	multi-exon	FALSE	canonical	3	51	junction_3	7.83156008298049	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCCAGCTCCGTGTGT	622	False	NA	16	True	ATTAAA	-14	NA	140668066	140670420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
ENSMUSG00000054065.13_5	chr7	+	1393	7	NIC	ENSMUSG00000054065.13	novel	1425	7	NA	NA	17	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	25.5255862921022	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCAGCTCCGTGTGTTT	631	False	NA	18	True	ATTAAA	-16	NA	140668075	140670422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140668298_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
ENSMUSG00000054065.13_6	chr7	+	1527	6	NIC	ENSMUSG00000054065.13	novel	1425	7	NA	NA	-21	-1	intron_retention	FALSE	canonical	3	51	junction_2	8.56504524214554	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCAGCTCCGTGTGTTT	593	False	NA	18	True	ATTAAA	-16	NA	140668037	140670422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
ENSMUSG00000054074.10_1	chr2	-	3485	1	ISM	ENSMUSG00000054074.10	ENSMUST00000091420.6	4376	2	1225	259	623	-259	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCCTGGTTCCATACA	3348	False	NA	-7	True	ATTAAA	-11	NA	18052637	18049152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_18049200_18052600
ENSMUSG00000054079.13_0	chr11	-	1847	14	FSM	ENSMUSG00000054079.13	ENSMUST00000066888.10	2613	14	55	711	55	-711	multi-exon	TRUE	canonical	3	770	junction_1	49.2161035848126	1028	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATAAGTGTACATGATTT	NA	False	NA	-14	True	AATAAA	-13	NA	93776537	93750779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159
ENSMUSG00000054083.9_1	chr7	+	3028	21	FSM	ENSMUSG00000054083.9	ENSMUST00000066880.6	3040	21	32	-20	32	20	multi-exon	FALSE	canonical	0	0	junction_20	1.10792599030802	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGAAGGTCTTAAGTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	28580878	28593008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28581386_28581975_28582046_28582194_28582314_28582552_28582687_28585152_28585322_28585795_28585871_28585957_28586044_28586122_28586198_28586997_28587162_28587244_28587481_28587843_28587856_28588036_28588246_28588497_28588541_28588621_28588682_28589205_28589264_28589580_28589652_28589748_28589812_28590335_28590415_28592043_28592161_28592247_28592307_28592386
ENSMUSG00000054091.10_0	chr3	+	950	2	FSM	ENSMUSG00000054091.10	ENSMUST00000106429.6	1160	2	204	6	204	-6	multi-exon	FALSE	canonical	3	1657	junction_1	0	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAATTTAGTTTCACACT	NA	False	NA	16	True	NA	NA	NA	122718055	122719827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_122718306_122719127
ENSMUSG00000054091.10_1	chr3	+	1300	1	NIC	ENSMUSG00000054091.10	novel	1160	2	NA	NA	234	-448	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTTATCTTT	NA	False	NA	107	True	AATAAA	-8	NA	122718085	122719385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_122718100_122719400
ENSMUSG00000054099.12_0	chr5	+	2744	12	FSM	ENSMUSG00000054099.12	ENSMUST00000066921.10	2784	12	25	15	2	-7	multi-exon	FALSE	canonical	3	29	junction_1	8.37055050175789	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATATATACAGATGTGT	NA	False	NA	NA	False	ATTAAA	-3	NA	8472874	8504782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_8473040_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ENSMUSG00000054099.12_13	chr5	+	1995	5	ISM	ENSMUSG00000054099.12	ENSMUST00000196727.5	2749	12	20807	-3	-100	3	3prime_fragment	FALSE	canonical	3	36	junction_3	8.8423695919137	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGTGTATTTGTGATT	NA	False	NA	NA	False	ATTAAA	-13	NA	8493664	8504792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ENSMUSG00000054099.12_14	chr5	+	1768	4	ISM	ENSMUSG00000054099.12	ENSMUST00000170496.6	2602	11	24462	-13	3596	-5	3prime_fragment	FALSE	canonical	3	36	junction_2	10.1980390271856	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTACAATCCTGTGTTGG	NA	False	NA	NA	False	AATAAA	-32	NA	8497360	8504749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_8497408_8499612_8499695_8502745_8502827_8503191
ENSMUSG00000054099.12_15	chr5	+	1687	3	ISM	ENSMUSG00000054099.12	ENSMUST00000170496.6	2602	11	26753	-18	5887	0	3prime_fragment	FALSE	canonical	3	36	junction_1	12	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATCCTGTGTTGGTTTAC	NA	False	NA	NA	False	AATAAA	-37	NA	8499651	8504754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_8499695_8502745_8502827_8503191
ENSMUSG00000054099.12_16	chr5	+	1095	1	ISM	ENSMUSG00000054099.12	ENSMUST00000066921.10	2784	12	30812	41	9897	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGTGTTGGTTTACAT	NA	False	NA	NA	False	AATAAA	-39	NA	8503661	8504756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_8503700_8504800
ENSMUSG00000054099.12_2	chr5	+	2664	11	FSM	ENSMUSG00000054099.12	ENSMUST00000170496.6	2602	11	-18	-44	8	-9	multi-exon	FALSE	canonical	2	9	junction_1	12.7342059037853	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTAATATATACAGATGT	NA	False	NA	NA	False	ATTAAA	-1	NA	8472880	8504780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_8473040_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ENSMUSG00000054099.12_3	chr5	+	2799	13	NIC	ENSMUSG00000054099.12	novel	4467	12	NA	NA	12	2	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	13.6829171678492	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGTGTTGGTTTACAT	NA	False	NA	NA	False	AATAAA	-39	NA	8472884	8504756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_8473040_8474796_8474888_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ENSMUSG00000054115.13_0	chr15	-	3095	10	FSM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	15	8	2	-8	multi-exon	TRUE	canonical	3	163	junction_7	20.0690167197789	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACAAGTACTTGAGCTG	NA	False	NA	NA	False	AATAAA	-12	NA	9140437	9112080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972_9128085_9139518_9139791_9140270
ENSMUSG00000054115.13_1	chr15	-	1624	1	ISM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	26751	5	26738	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGTACTTGAGCTGCTT	NA	False	NA	NA	False	AATAAA	-15	NA	9113701	9112077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_9112100_9113700
ENSMUSG00000054136.7_0	chr15	+	1057	3	FSM	ENSMUSG00000054136.7	ENSMUST00000066991.7	1298	3	238	3	238	-3	multi-exon	FALSE	canonical	3	63	junction_1	15	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGTGGCCACTCTCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	89207160	89208931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_89207337_89207479_89207604_89208174
ENSMUSG00000054136.7_2	chr15	+	1765	1	Genic_Genomic	ENSMUSG00000054136.7	novel	NA	NA	NA	NA	262	15	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCAGTTTACCTTTCTG	NA	False	NA	NA	False	ATTAAA	-34	NA	89207184	89208949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_89207200_89208900
ENSMUSG00000054136.7_3	chr15	+	866	2	ISM	ENSMUSG00000054136.7	ENSMUST00000066991.7	1298	3	571	4	571	-4	3prime_fragment	FALSE	canonical	3	93	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGCTGTGGCCACTCTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	89207493	89208930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_89207604_89208174
ENSMUSG00000054160.3_0	chr2	-	1622	2	FSM	ENSMUSG00000054160.3	ENSMUST00000067020.3	1725	2	101	2	101	-2	multi-exon	FALSE	canonical	3	7	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATACGGATTGTTACCG	NA	False	NA	NA	False	AATAAA	-16	NA	146927264	146925237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_146926410_146926814
ENSMUSG00000054160.3_2	chr2	-	1358	1	NIC	ENSMUSG00000054160.3	novel	1725	2	NA	NA	769	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTATACGGATTGTTACC	NA	False	NA	NA	False	AATAAA	-15	NA	146926596	146925238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_146925200_146926600
ENSMUSG00000054169.8_2	chr7	+	1065	4	FSM	ENSMUSG00000054169.8	ENSMUST00000038069.9	1048	4	-24	7	-24	-3	multi-exon	FALSE	canonical	3	18	junction_2	7.31816613336672	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAAGGTTGGCTCCTTC	1083	False	NA	NA	False	AATAAA	-18	NA	24476606	24484074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24476765_24477550_24477911_24480294_24480655_24483887
ENSMUSG00000054169.8_3	chr7	+	695	3	FSM	ENSMUSG00000054169.8	ENSMUST00000206847.2	662	3	-32	-1	-10	1	multi-exon	FALSE	canonical	2	6	junction_1	14	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTTGGCTCCTTCGACT	1097	False	NA	NA	False	AATAAA	-22	NA	24476620	24484078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24476765_24480294_24480655_24483887
ENSMUSG00000054196.8_0	chr15	+	1196	4	FSM	ENSMUSG00000054196.8	ENSMUST00000067072.5	1166	4	-39	9	-39	-9	multi-exon	FALSE	canonical	3	14	junction_1	1.88561808316413	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTAAGTATTTGTTTA	NA	False	NA	NA	False	AATAAA	-9	NA	38940287	38950507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_38940555_38943877_38944100_38947660_38947878_38950017
ENSMUSG00000054199.18_13	chr3	+	7563	33	NIC	ENSMUSG00000054199.19	novel	7587	33	NA	NA	-11	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	85.5676758387038	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCTCAAGTGTTCGTT	NA	False	NA	6	True	AGTAAA	-10	NA	88742549	88817401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_88742597_88744296_88744828_88753694_88753887_88761908_88762103_88762932_88763008_88763121_88763173_88763725_88763777_88764434_88764534_88765693_88765814_88766195_88766367_88770726_88770920_88776056_88776159_88777109_88777151_88783213_88783238_88787377_88787482_88794212_88794412_88794865_88794953_88796977_88797147_88798119_88798265_88799824_88799976_88801748_88801866_88802126_88803879_88805411_88805668_88806196_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544
ENSMUSG00000054199.18_2	chr3	+	3776	12	Fusion	ENSMUSG00000054199.19_ENSMUSG00000078684.9	novel	6190	19	NA	NA	-14253	-2	multi-exon	FALSE	canonical	3	105	junction_5	80.8591265541957	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCAAGTGTTCGTTTTC	NA	False	NA	9	True	AGTAAA	-13	NA	88728281	88817404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr3_+_88729107_88730848_88731105_88731656_88731842_88732696_88732895_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544
ENSMUSG00000054199.18_68	chr3	+	4284	12	ISM	ENSMUSG00000054199.19	ENSMUST00000081695.15	7587	33	60008	2	4804	-2	3prime_fragment	FALSE	canonical	3	105	junction_5	75.4022820094419	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCAAGTGTTCGTTTTC	NA	False	NA	9	True	AGTAAA	-13	NA	88802545	88817404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88803879_88805411_88805668_88806196_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544
ENSMUSG00000054199.18_72	chr3	+	2626	10	ISM	ENSMUSG00000054199.19	ENSMUST00000081695.15	7587	33	63725	5	8521	-5	3prime_fragment	FALSE	canonical	3	105	junction_3	39.0327497821452	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCTCAAGTGTTCGTT	NA	False	NA	6	True	AGTAAA	-10	NA	88806262	88817401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544
ENSMUSG00000054199.18_78	chr3	+	1380	3	ISM	ENSMUSG00000054199.19	ENSMUST00000081695.15	7587	33	72961	1	17757	-1	3prime_fragment	FALSE	canonical	3	153	junction_1	2	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCAAGTGTTCGTTTTCT	NA	False	NA	10	True	AGTAAA	-14	NA	88815498	88817405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88815915_88815993_88816097_88816544
ENSMUSG00000054200.8_0	chr19	+	1409	3	FSM	ENSMUSG00000054200.8	ENSMUST00000067098.8	1401	3	-11	3	-11	-3	multi-exon	FALSE	canonical	2	4	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACATAAATCTCTATCTTG	NA	False	NA	NA	False	NA	NA	NA	38085507	38102708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_38086142_38095829_38095959_38102062
ENSMUSG00000054206.3_0	chr10	+	3184	9	Fusion	ENSMUSG00000020307.16_ENSMUSG00000054206.3	novel	1078	6	NA	NA	-13	-2	intron_retention	FALSE	canonical	2	4	junction_5	939.378517957485	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCCCTGTCTGCCTCTGG	NA	False	NA	NA	False	AATAAA	-21	NA	79518015	79531092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr10_+_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682_79525300_79528654_79528815_79529957_79530097_79530184_79530452_79530820
ENSMUSG00000054226.14_1	chr6	+	2105	6	FSM	ENSMUSG00000054226.14	ENSMUST00000067137.14	2103	6	-5	3	4	-3	multi-exon	FALSE	canonical	3	153	junction_1	21.35790251874	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGAGTTGCCTTGGTTATT	3413	False	NA	19	True	NA	NA	NA	85892723	85907261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
ENSMUSG00000054226.14_17	chr6	+	2219	6	NIC	ENSMUSG00000054226.14	novel	818	5	NA	NA	148	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	78.5636048052786	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTGCCTTGGTTATTA	3617	False	NA	20	True	NA	NA	NA	85892927	85907262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_85893090_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
ENSMUSG00000054226.14_25	chr6	+	1457	1	ISM	ENSMUSG00000054226.14	ENSMUST00000113753.8	2222	7	13084	6	13024	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGGTTAT	NA	False	NA	18	True	NA	NA	NA	85905803	85907260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_85905800_85907300
ENSMUSG00000054226.14_6	chr6	+	2895	5	FSM	ENSMUSG00000054226.14	ENSMUST00000202803.4	716	5	4	-2183	4	-4	multi-exon	FALSE	canonical	3	153	junction_1	23.847169643377	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGGTTAT	3413	False	NA	18	True	NA	NA	NA	85892723	85907260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789
ENSMUSG00000054226.14_8	chr6	+	2208	7	FSM	ENSMUSG00000054226.14	ENSMUST00000113753.8	2222	7	8	6	-1	-4	multi-exon	FALSE	canonical	3	4	junction_1	87.3983536585342	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGGTTAT	3417	False	NA	18	True	NA	NA	NA	85892727	85907260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_85892773_85896898_85897007_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
ENSMUSG00000054237.7_0	chr19	-	1388	14	FSM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	13	1	13	-1	multi-exon	FALSE	canonical	3	295	junction_2	36.3583414649629	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTCAGAGTCTTTCC	NA	False	NA	-8	True	AATAAA	-19	NA	38212573	38176929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ENSMUSG00000054237.7_1	chr19	-	3429	13	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	20	1	20	-1	intron_retention	TRUE	canonical	3	295	junction_2	36.707931325835	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTCAGAGTCTTTCC	NA	False	NA	-8	True	AATAAA	-19	NA	38212566	38176929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284
ENSMUSG00000054237.7_25	chr19	-	939	9	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	17	16061	17	1	5prime_fragment	FALSE	canonical	3	315	junction_8	31.196954979613	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTTTAGCATTATGGA	NA	False	NA	NA	False	AATAAA	-11	NA	38212569	38192989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ENSMUSG00000054252.19_0	chr5	+	4149	18	FSM	ENSMUSG00000054252.19	ENSMUST00000067150.14	4218	18	63	6	-4	-2	multi-exon	FALSE	canonical	2	4	junction_16	3.88235294117647	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGCCTCGATTTCT	NA	False	NA	7	True	AATAAA	-14	NA	33879130	33894405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_33879273_33879649_33879856_33884990_33885261_33885535_33885590_33887024_33887195_33887279_33887404_33887487_33887679_33889460_33889606_33890065_33890257_33890600_33890747_33891003_33891126_33891199_33891311_33891390_33891582_33891690_33891814_33891896_33891968_33892194_33892333_33892476_33892583_33892757
ENSMUSG00000054252.19_4	chr5	+	4167	18	FSM	ENSMUSG00000054252.19	ENSMUST00000169212.9	4245	18	70	8	3	-3	multi-exon	FALSE	canonical	1	2	junction_1	4.36564125065399	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGAGTGCCTCGATTTC	NA	False	NA	6	True	AATAAA	-13	NA	33879137	33894404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_33879299_33879649_33879856_33884990_33885261_33885535_33885590_33887024_33887195_33887279_33887404_33887487_33887679_33889460_33889606_33890065_33890257_33890600_33890747_33891003_33891126_33891199_33891311_33891390_33891582_33891690_33891814_33891896_33891968_33892194_33892333_33892476_33892583_33892757
ENSMUSG00000054256.12_1	chr5	+	2961	13	Fusion	ENSMUSG00000087292.2_ENSMUSG00000054256.12	novel	806	9	NA	NA	-1	-14	multi-exon	FALSE	canonical	2	9	junction_2	31.6227766016838	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTGAAAATAACTTGCC	4781	False	NA	1	True	AATAAA	-1	NA	115497154	115593743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr5_+_115497328_115548673_115548759_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115585188_115585246_115588273_115588343_115588845_115589034_115589515_115589580_115591884
ENSMUSG00000054256.12_2	chr5	+	2941	13	Fusion	ENSMUSG00000087292.2_ENSMUSG00000054256.12	novel	806	9	NA	NA	-7	-7	multi-exon	FALSE	canonical	2	9	junction_2	32.3525501313266	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAACTTGCCTTTATTC	4775	False	NA	8	True	AATAAA	-8	NA	115497148	115593750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr5_+_115497328_115548673_115548759_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115585188_115585246_115588273_115588343_115588878_115589034_115589515_115589580_115591884
ENSMUSG00000054256.12_20	chr5	+	956	1	ISM	ENSMUSG00000054256.12	ENSMUST00000150779.8	3133	15	25137	7	19238	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAACTTGCCTTTATTC	NA	False	NA	8	True	AATAAA	-8	NA	115592794	115593750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_115592800_115593800
ENSMUSG00000054256.12_5	chr5	+	3102	15	FSM	ENSMUSG00000054256.12	ENSMUST00000150779.8	3133	15	24	7	24	-7	multi-exon	FALSE	canonical	3	46	junction_12	14.3358050392173	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAACTTGCCTTTATTC	2413	False	NA	8	True	AATAAA	-8	NA	115567681	115593750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115567866_115568035_115568077_115568681_115568764_115568862_115568948_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115585188_115585246_115588273_115588343_115588845_115589034_115589515_115589580_115591884
ENSMUSG00000054256.12_6	chr5	+	3071	15	NIC	ENSMUSG00000054256.12	novel	3133	15	NA	NA	22	-7	combination_of_known_junctions	FALSE	canonical	3	37	junction_12	16.062378404209	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAACTTGCCTTTATTC	2411	False	NA	8	True	AATAAA	-8	NA	115567679	115593750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_115567866_115568035_115568077_115568681_115568764_115568862_115568948_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115585188_115585246_115588273_115588343_115588878_115589034_115589515_115589580_115591884
ENSMUSG00000054256.12_7	chr5	+	3009	14	NIC	ENSMUSG00000054256.12	novel	3133	15	NA	NA	-40	-7	combination_of_known_junctions	FALSE	canonical	2	8	junction_10	24.7218849935262	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAACTTGCCTTTATTC	2449	False	NA	8	True	AATAAA	-8	NA	115567717	115593750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_115567866_115568035_115568077_115568681_115568764_115568862_115568948_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115588273_115588343_115588845_115589034_115589515_115589580_115591884
ENSMUSG00000054263.13_0	chr15	+	9760	22	NNC	ENSMUSG00000054263.13	novel	4143	20	NA	NA	-2	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_20	10.5211157940126	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTACCCTAGTAAATTTG	NA	False	NA	NA	False	AATAAA	-14	NA	7159050	7226959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_7159308_7183867_7184029_7186636_7186749_7188871_7189003_7194009_7194174_7196363_7196539_7198492_7198748_7202336_7202467_7202871_7203042_7205040_7205187_7206912_7207076_7207384_7207456_7208279_7208494_7211333_7211514_7214197_7214300_7215046_7215215_7216346_7216509_7217555_7217650_7219595_7219675_7220026_7222198_7222263_7222810_7222850
ENSMUSG00000054263.13_1	chr15	+	4134	20	FSM	ENSMUSG00000054263.13	ENSMUST00000067190.12	4143	20	10	-1	2	1	multi-exon	FALSE	canonical	3	17	junction_15	6.67529450936089	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGGTTATCAAACAGTT	NA	False	NA	NA	False	GATAAA	-26	NA	7159049	7221225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_7159308_7183867_7184029_7186636_7186749_7188871_7189003_7194009_7194174_7196363_7196539_7198492_7198748_7202336_7202467_7202871_7203042_7205040_7205187_7206912_7207076_7207384_7207456_7208279_7208494_7211333_7211514_7214197_7214300_7215046_7215215_7216346_7216509_7217555_7217650_7219595_7219675_7220026
ENSMUSG00000054263.13_2	chr15	+	2706	16	NIC	ENSMUSG00000054263.13	novel	2844	17	NA	NA	-3	-8	combination_of_known_junctions	FALSE	canonical	2	7	junction_15	8.17964954424495	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCATACATGCGGCA	NA	False	NA	NA	False	NA	NA	NA	7159044	7214816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_7159308_7183867_7184029_7186636_7186749_7188871_7189003_7194009_7194174_7196363_7196539_7198492_7198748_7202336_7202467_7202871_7203042_7205040_7205187_7206912_7207076_7207384_7207456_7208279_7208494_7211333_7211514_7214197_7214300_7214547
ENSMUSG00000054263.13_8	chr15	+	2796	1	ISM	ENSMUSG00000054263.13	ENSMUST00000171588.2	9655	19	40335	6	40335	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCTAGTAAATTTGGACAT	7830	False	NA	NA	False	AATAAA	-19	NA	7224168	7226964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_7224200_7227000
ENSMUSG00000054272.7_0	chr7	+	1846	4	NNC	ENSMUSG00000054272.7	novel	2276	4	NA	NA	-21	-420	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	13.1233464566864	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTGTTTTGTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	10739650	10744054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_10739748_10740385_10740858_10742693_10742854_10742937
ENSMUSG00000054272.7_1	chr7	+	1877	4	FSM	ENSMUSG00000054272.7	ENSMUST00000131379.4	2276	4	-21	420	-21	-420	multi-exon	FALSE	canonical	3	7	junction_1	11.2644968324772	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTGTTTTGTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	10739650	10744054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_10739779_10740385_10740858_10742693_10742854_10742937
ENSMUSG00000054277.9_1	chr15	-	2591	16	FSM	ENSMUSG00000054277.9	ENSMUST00000067215.9	2619	16	19	9	19	-8	multi-exon	FALSE	canonical	3	20	junction_9	11.3927852413515	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGCAGACGGTTGCCT	3544	False	NA	-35	True	AATATA	-7	NA	83234429	83183948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194586_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208352_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
ENSMUSG00000054277.9_11	chr15	-	1073	3	FSM	ENSMUSG00000054277.9	ENSMUST00000226816.2	1186	3	21	92	21	-11	multi-exon	FALSE	canonical	2	5	junction_2	31.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATGAACCAAAAATGTGAT	NA	False	NA	-119	True	AGTAAA	-15	NA	83189521	83184032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83184904_83187303_83187426_83189441
ENSMUSG00000054277.9_25	chr15	-	2346	14	ISM	ENSMUSG00000054277.9	ENSMUST00000067215.9	2619	16	13376	132	-3604	-50	3prime_fragment	FALSE	canonical	3	20	junction_9	10.8070763580297	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATATATTGTTCAGCGCA	NA	False	NA	NA	False	AATAAA	-29	NA	83221072	83184071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194586_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208352_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854
ENSMUSG00000054277.9_3	chr15	-	2516	16	NNC	ENSMUSG00000054277.9	novel	2619	16	NA	NA	20	-4	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_9	10.2515039547051	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAAATGTGATTTCAGAT	3545	False	NA	-112	True	AGTAAA	-22	NA	83234428	83184025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194586_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208355_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
ENSMUSG00000054277.9_4	chr15	-	2448	1	NIC	ENSMUSG00000054277.9	novel	2619	16	NA	NA	3154	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACGGTTGCCTGTGTTGTC	NA	False	NA	-27	True	AATATA	-15	NA	83186388	83183940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_83183900_83186400
ENSMUSG00000054277.9_6	chr15	-	1004	2	ISM	ENSMUSG00000054277.9	ENSMUST00000226816.2	1186	3	2195	3	2195	-3	3prime_fragment	FALSE	canonical	3	68	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGACGGTTGCCTGTGTT	NA	False	NA	-30	True	AATATA	-12	NA	83187347	83183943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_83184904_83187303
ENSMUSG00000054277.9_9	chr15	-	2507	16	FSM	ENSMUSG00000054277.9	ENSMUST00000226124.2	2461	16	-52	6	21	-6	multi-exon	TRUE	canonical	3	13	junction_5	14.6272196796095	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAAAATGTGATTTCAG	3546	False	NA	-114	True	AGTAAA	-20	NA	83234427	83184027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194583_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208352_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
ENSMUSG00000054280.15_0	chr5	-	6014	6	ISM	ENSMUSG00000054280.15	ENSMUST00000120129.9	9959	11	25711	10	133	-10	3prime_fragment	FALSE	canonical	3	105	junction_2	17.4974283824795	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGATAATTGTCAAGGC	NA	False	NA	-5	True	AATAAA	-16	NA	32985889	32947173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_32951177_32952933_32953006_32977209_32977317_32977936_32978109_32979410_32979483_32984301
ENSMUSG00000054280.15_1	chr5	-	2611	1	ISM	ENSMUSG00000054280.15	ENSMUST00000120129.9	9959	11	61818	8	3666	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATAATTGTCAAGGCTA	NA	False	NA	-3	True	AATAAA	-18	NA	32949782	32947171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_32947200_32949800
ENSMUSG00000054280.15_12	chr5	-	9936	11	FSM	ENSMUSG00000054280.15	ENSMUST00000120129.9	9959	11	7	16	7	-16	multi-exon	FALSE	canonical	3	28	junction_10	39.1414102965133	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCATTCAGATAATTGT	7060	False	NA	-11	True	AATAAA	-10	NA	33011593	32947179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_32951177_32952933_32953006_32977209_32977317_32977936_32978109_32979410_32979483_32984301_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33009225_33009343_33011436
ENSMUSG00000054280.15_3	chr5	-	9818	10	NIC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	8	-16	combination_of_known_splicesites	FALSE	canonical	3	86	junction_9	19.7821468332771	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCATTCAGATAATTGT	7061	False	NA	-11	True	AATAAA	-10	NA	33011592	32947179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_32951177_32952933_32953006_32977209_32977317_32977936_32978109_32979410_32979483_32984301_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33011436
ENSMUSG00000054280.15_4	chr5	-	9297	9	NIC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	8	-16	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	40.2670771226321	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCATTCAGATAATTGT	7061	False	NA	-11	True	AATAAA	-10	NA	33011592	32947179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_32951177_32952933_32953006_32977209_32977317_32977936_32978109_32979410_32979483_32984301_32988896_32989148_32989203_32992959_32993033_33011436
ENSMUSG00000054302.16_13	chr12	-	1033	6	FSM	ENSMUSG00000054302.16	ENSMUST00000161592.8	4186	6	25	3128	6	-2	multi-exon	FALSE	canonical	3	353	junction_3	29.9973332148043	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAGGAGTGGTTATCA	NA	False	NA	-7	True	ATTAAA	-17	NA	54742641	54720252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
ENSMUSG00000054302.16_3	chr12	-	2977	7	NNC	ENSMUSG00000054302.16	novel	2658	7	NA	NA	-8	352	at_least_one_novel_splicesite	TRUE	non_canonical	2	22	junction_1	141.534153710921	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTATTGTTCATGTCC	NA	False	NA	-10	True	AATAAA	-9	NA	54742636	54718087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_54718634_54718849_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
ENSMUSG00000054309.10_1	chr12	+	2252	18	FSM	ENSMUSG00000054309.10	ENSMUST00000067284.10	2499	18	24	223	-17	-2	multi-exon	FALSE	canonical	3	692	junction_10	70.3324286444819	1093	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGGGGTGCCTGTTTACT	NA	False	NA	11	True	AATAAA	-15	NA	21336382	21364834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
ENSMUSG00000054312.7_1	chr3	-	431	3	FSM	ENSMUSG00000054312.7	ENSMUST00000067298.5	488	3	37	20	37	0	multi-exon	FALSE	canonical	3	716	junction_2	92.5	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAGGCTTGGACATA	NA	False	NA	NA	False	AATAAA	-17	NA	95778794	95769965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95770245_95777805_95777928_95778764
ENSMUSG00000054312.7_2	chr3	-	405	2	FSM	ENSMUSG00000054312.7	ENSMUST00000072587.5	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAGGCTTGGACATA	NA	False	NA	NA	False	AATAAA	-17	NA	95777931	95769965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95770245_95777805
ENSMUSG00000054321.8_2	chr18	+	4395	15	FSM	ENSMUSG00000054321.8	ENSMUST00000234789.2	5134	15	1	738	1	-738	multi-exon	FALSE	canonical	3	88	junction_13	8.14912039825809	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAACAAAACTTTGC	NA	False	NA	-8	True	AATACA	-14	NA	14916302	15032678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_14916992_14929969_14930116_14932135_14932244_14937522_14937685_14937773_14937897_14940401_14940492_14946147_14946748_14954494_14954613_14955150_14955263_14963075_14963246_14968848_14968980_14974961_14975088_14977470_14977528_14992228_14992334_15031020
ENSMUSG00000054321.8_3	chr18	+	4290	14	NIC	ENSMUSG00000054321.8	novel	5134	15	NA	NA	3	-718	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	28.1548969959414	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCACTGTCTTTGCAGC	NA	False	NA	12	True	ATTAAA	-18	NA	14916304	15032698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_14916992_14929969_14930116_14932135_14932244_14937522_14937685_14940401_14940492_14946147_14946748_14954494_14954613_14955150_14955263_14963075_14963246_14968848_14968980_14974961_14975088_14977470_14977528_14992228_14992334_15031020
ENSMUSG00000054362.10_0	chr4	-	2045	8	ISM	ENSMUSG00000054362.10	ENSMUST00000106788.2	1569	10	1456	-399	1456	-2	3prime_fragment	FALSE	canonical	1	5	junction_3	4.52656557650139	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCGGTTCTACCAGTTG	NA	False	NA	NA	False	AATAAA	-21	NA	106472979	106448107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_106448885_106464485_106464620_106467596_106467723_106468609_106468772_106470305_106470450_106470564_106470700_106472231_106472355_106472535
ENSMUSG00000054364.6_0	chr12	-	2334	1	FSM	ENSMUSG00000054364.6	ENSMUST00000067384.6	2349	1	-1	16	-1	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACATTTATAAACAGCTC	NA	False	NA	71	True	ATTAAA	-12	NA	8550010	8547676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_8547700_8550000
ENSMUSG00000054381.6_0	chr7	-	2650	3	FSM	ENSMUSG00000054381.6	ENSMUST00000067425.6	2684	3	7	27	7	-27	multi-exon	FALSE	canonical	3	22	junction_2	4	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAATAAAGAAACAA	922	False	NA	NA	False	NA	NA	NA	126975215	126971735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126973871_126974560_126974675_126974814
ENSMUSG00000054381.6_1	chr7	-	1694	1	ISM	ENSMUSG00000054381.6	ENSMUST00000067425.6	2684	3	1807	13	1770	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAAAACCTCATAAATG	2722	False	NA	NA	False	NA	NA	NA	126973415	126971721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126971700_126973400
ENSMUSG00000054381.6_3	chr7	-	2336	2	FSM	ENSMUSG00000054381.6	ENSMUST00000206942.2	750	2	454	-2040	451	0	multi-exon	FALSE	canonical	3	30	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGATTTCTGCTCCTC	1403	False	NA	NA	False	NA	NA	NA	126974734	126971708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126973871_126974560
ENSMUSG00000054387.14_10	chr1	-	7037	11	FSM	ENSMUSG00000054387.14	ENSMUST00000067398.13	1914	11	9	-5132	1	-2	multi-exon	FALSE	canonical	3	161	junction_9	94.8116026654966	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTTTTGTCATTATT	NA	False	NA	-7	True	ATTAAA	-13	NA	132953085	132913959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
ENSMUSG00000054387.14_14	chr1	-	7893	5	ISM	ENSMUSG00000054387.14	ENSMUST00000188090.7	7105	11	20125	3	-966	-3	intron_retention	FALSE	canonical	3	375	junction_1	27.5352047386614	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTGTTTTGTCATTAT	NA	False	NA	-8	True	ATTAAA	-12	NA	132933029	132913960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528
ENSMUSG00000054387.14_15	chr1	-	6973	10	FSM	ENSMUSG00000054387.14	ENSMUST00000191212.7	2799	10	7	-4181	-2	-1	multi-exon	FALSE	canonical	3	144	junction_5	107.251521615728	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTTTTGTCATTATTG	NA	False	NA	-6	True	ATTAAA	-14	NA	132953088	132913958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
ENSMUSG00000054387.14_4	chr1	-	7031	11	FSM	ENSMUSG00000054387.14	ENSMUST00000188090.7	7105	11	72	2	4	-2	multi-exon	FALSE	canonical	3	199	junction_6	81.9383304687129	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTTTTGTCATTATT	NA	False	NA	-7	True	ATTAAA	-13	NA	132953082	132913959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
ENSMUSG00000054387.14_5	chr1	-	3063	1	ISM	ENSMUSG00000054387.14	ENSMUST00000188090.7	7105	11	36133	1	12138	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTTTTGTCATTATTG	NA	False	NA	-6	True	ATTAAA	-14	NA	132917021	132913958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_132914000_132917000
ENSMUSG00000054387.14_7	chr1	-	6968	10	NIC	ENSMUSG00000054387.14	novel	7105	11	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	3	144	junction_5	94.521537162989	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTGTTTTGTCATTAT	NA	False	NA	-8	True	ATTAAA	-12	NA	132953088	132913960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
ENSMUSG00000054387.14_8	chr1	-	6998	11	NIC	ENSMUSG00000054387.14	novel	7105	11	NA	NA	-3	-3	combination_of_known_junctions	FALSE	canonical	3	61	junction_6	112.364629666101	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTGTTTTGTCATTAT	NA	False	NA	-8	True	ATTAAA	-12	NA	132953079	132913960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932431_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
ENSMUSG00000054400.17_0	chr8	+	616	4	FSM	ENSMUSG00000054400.17	ENSMUST00000034342.13	667	4	48	3	6	0	multi-exon	FALSE	canonical	3	233	junction_3	21.1397466609439	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATTTTCTGCAGATCTC	4840	False	NA	7	True	ATTAAA	-19	NA	104977540	104990076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104989902
ENSMUSG00000054400.17_1	chr8	+	3858	2	FSM	ENSMUSG00000054400.17	ENSMUST00000212433.2	1304	2	16	-2570	-5	-342	multi-exon	FALSE	canonical	3	282	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTTGTTAATGGCTTCA	4829	False	NA	NA	False	NA	NA	NA	104977529	104987576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_104977728_104983916
ENSMUSG00000054400.17_10	chr8	+	3220	3	FSM	ENSMUSG00000054400.17	ENSMUST00000212939.2	737	3	-37	-2446	4	-344	multi-exon	FALSE	canonical	0	0	junction_2	141	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGTTTGTTAATGGCTT	4838	False	NA	NA	False	NA	NA	NA	104977538	104987574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_104977728_104983916_104984076_104984702
ENSMUSG00000054400.17_2	chr8	+	4644	3	NIC	ENSMUSG00000054400.17	novel	525	3	NA	NA	0	-7	intron_retention	FALSE	canonical	3	233	junction_2	24.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATCCATATATTTTCTG	4834	False	NA	-1	True	ATTAAA	-11	NA	104977534	104990068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_104977728_104983916_104988202_104989902
ENSMUSG00000054405.15_0	chr4	+	1371	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	19	11	2	-11	multi-exon	TRUE	canonical	3	2684	junction_8	233.065676097962	2098	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAAGCCTTTGATGGTCT	2350	False	NA	8	True	AATAAA	-8	NA	132262879	132281042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
ENSMUSG00000054408.10_0	chr8	-	3417	5	FSM	ENSMUSG00000054408.10	ENSMUST00000067476.9	3466	5	27	22	27	-22	multi-exon	FALSE	canonical	0	0	junction_3	423.496753234308	1945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATATGCATTTTAAAG	NA	False	NA	-26	True	AATAAA	-38	NA	54983006	54973489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_54976431_54977975_54978092_54979485_54979563_54981376_54981451_54982797
ENSMUSG00000054408.10_6	chr8	-	2027	1	ISM	ENSMUSG00000054408.10	ENSMUST00000067476.9	3466	5	7517	22	7517	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATATGCATTTTAAAG	NA	False	NA	-26	True	AATAAA	-38	NA	54975516	54973489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_54973500_54975500
ENSMUSG00000054414.5_0	chr3	-	2045	1	NIC	ENSMUSG00000054414.5	novel	1326	2	NA	NA	1985	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCTTCCTGAGTCATG	NA	False	NA	NA	False	ATTAAA	-10	NA	115734673	115732628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_115732600_115734700
ENSMUSG00000054414.5_11	chr3	-	1946	11	FSM	ENSMUSG00000054414.5	ENSMUST00000067485.4	9020	11	34	7040	34	-7040	multi-exon	FALSE	canonical	3	92	junction_7	12.5940462123973	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAATTGTCTTTGTGTAT	142	False	NA	-6	True	NA	NA	NA	115801021	115739661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_115740361_115747700_115747851_115750519_115750611_115772292_115772429_115775410_115775462_115778473_115778624_115783660_115783788_115784375_115784464_115786574_115786689_115800482_115800585_115800783
ENSMUSG00000054414.5_6	chr3	-	6484	13	NNC	ENSMUSG00000054414.5	novel	9020	11	NA	NA	51	-2308	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	39.5062407165698	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTCAGTCCATTTAATGC	159	False	NA	NA	False	AATAAA	-17	NA	115801004	115734929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_115736192_115736340_115737313_115737340_115740361_115747700_115747851_115750519_115750611_115772292_115772429_115775410_115775462_115778473_115778624_115783660_115783788_115784375_115784464_115786574_115786689_115800482_115800585_115800783
ENSMUSG00000054418.7_0	chr11	+	625	2	FSM	ENSMUSG00000054418.7	ENSMUST00000155384.2	1784	2	99	1060	99	-1060	multi-exon	FALSE	canonical	3	27	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCGGTCTCAGAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	117502171	117503623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117502261_117503087
ENSMUSG00000054426.12_1	chr3	-	777	3	NNC	ENSMUSG00000054426.12	novel	739	3	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	24.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATTGCCTTGGCTATGG	947	False	NA	-7	True	NA	NA	NA	115681740	115675231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_115675488_115679862_115680068_115681424
ENSMUSG00000054426.12_3	chr3	-	576	2	FSM	ENSMUSG00000054426.12	ENSMUST00000185424.2	433	2	-143	0	-1	0	multi-exon	FALSE	canonical	3	36	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATTGCCTTGGCTATGG	943	False	NA	-7	True	NA	NA	NA	115681744	115675231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_115675488_115681424
ENSMUSG00000054426.12_4	chr3	-	513	3	FSM	ENSMUSG00000054426.12	ENSMUST00000188260.7	739	3	224	2	17	0	multi-exon	FALSE	canonical	2	5	junction_2	22	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATTGCCTTGGCTATGG	1168	False	NA	-7	True	NA	NA	NA	115681519	115675231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_115675488_115679862_115680025_115681424
ENSMUSG00000054428.13_0	chr4	-	458	3	FSM	ENSMUSG00000054428.13	ENSMUST00000067496.7	539	3	74	7	10	-7	multi-exon	FALSE	canonical	3	7869	junction_2	284	1357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGCCTGATGCCTTCT	9315	False	NA	-27	True	AATAAA	-12	NA	132260896	132257872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132258135_132260606_132260699_132260792
ENSMUSG00000054428.13_1	chr4	-	2930	2	FSM	ENSMUSG00000054428.13	ENSMUST00000145795.2	1014	2	7	-1923	7	-10	multi-exon	FALSE	canonical	3	7869	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAACTTGCCTGATGCCT	9312	False	NA	-30	True	AATAAA	-9	NA	132260899	132257875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132260699_132260792
ENSMUSG00000054434.15_1	chr5	+	1710	12	FSM	ENSMUSG00000054434.15	ENSMUST00000067505.15	2164	12	31	423	-19	317	multi-exon	FALSE	canonical	3	93	junction_3	11.7768508046945	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTACCTGTGTTGTCTCT	NA	False	NA	23	True	NA	NA	NA	123214368	123255389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_123214559_123236237_123236357_123237899_123238017_123239687_123239748_123240316_123240413_123242484_123242575_123252164_123252231_123252630_123252693_123253162_123253256_123253723_123253789_123254264_123254334_123254706
ENSMUSG00000054434.15_5	chr5	+	2557	10	ISM	ENSMUSG00000054434.15	ENSMUST00000067505.15	2164	12	31	425	-19	315	intron_retention	FALSE	canonical	3	93	junction_3	12.2202018532156	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACCTACCTGTGTTGTCT	NA	False	NA	21	True	NA	NA	NA	123214368	123255387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_123214559_123236237_123236357_123237899_123238017_123239687_123239748_123240316_123240413_123242484_123242575_123252164_123252231_123252630_123252693_123253162_123253256_123253723
ENSMUSG00000054452.11_0	chr10	+	1221	7	FSM	ENSMUSG00000054452.11	ENSMUST00000002518.9	1411	7	-8	198	-2	107	multi-exon	FALSE	canonical	3	2772	junction_6	274.064925397858	2135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGTTTATGATTTCTTT	49	False	NA	18	True	AATAAA	-18	NA	81395319	81401998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81395503_81397052_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401305
ENSMUSG00000054452.11_4	chr10	+	1216	7	NIC	ENSMUSG00000054452.11	novel	1411	7	NA	NA	0	107	combination_of_known_junctions	FALSE	canonical	3	368	junction_6	1051.93209804098	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGTTTATGATTTCTTT	51	False	NA	18	True	AATAAA	-18	NA	81395321	81401998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_81395503_81397052_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401308
ENSMUSG00000054455.6_0	chr2	+	1975	6	FSM	ENSMUSG00000054455.6	ENSMUST00000067530.6	7032	6	66	4991	66	1223	multi-exon	FALSE	canonical	3	50	junction_2	5.74804314527997	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTAAGAGTCCTTTTGTC	NA	False	NA	9	True	AATAAA	-6	NA	173579369	173621141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_173579544_173603909_173604063_173613313_173613418_173616186_173616268_173617904_173618082_173619855
ENSMUSG00000054455.6_2	chr2	+	822	1	ISM	ENSMUSG00000054455.6	ENSMUST00000067530.6	7032	6	41028	4979	10339	1235	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTCATTTTGTCACAT	NA	False	NA	21	True	AATAAA	-18	NA	173620331	173621153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_173620300_173621200
ENSMUSG00000054469.15_0	chr17	+	4408	6	FSM	ENSMUSG00000054469.15	ENSMUST00000067545.8	4467	6	53	6	53	-6	multi-exon	FALSE	canonical	3	22	junction_1	24.2866218317822	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGCTGTTGTGATTCT	NA	False	NA	10	True	AATAAA	-20	NA	73415041	73550357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_73415173_73468817_73468987_73476490_73476690_73494869_73495017_73503673_73503791_73546712
ENSMUSG00000054469.15_1	chr17	+	4388	6	NIC	ENSMUSG00000054469.15	novel	4467	6	NA	NA	52	-6	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	15.992498241363	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGCTGTTGTGATTCT	NA	False	NA	10	True	AATAAA	-20	NA	73415040	73550357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_73415152_73468817_73468987_73476490_73476690_73494869_73495017_73503673_73503791_73546712
ENSMUSG00000054469.15_16	chr17	+	3868	3	ISM	ENSMUSG00000054469.15	ENSMUST00000131335.2	726	5	24927	-3454	-16234	-6	3prime_fragment	FALSE	canonical	3	63	junction_1	10.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGCTGTTGTGATTCT	NA	False	NA	10	True	AATAAA	-20	NA	73494910	73550357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_73495017_73503673_73503791_73546712
ENSMUSG00000054469.15_17	chr17	+	2853	1	ISM	ENSMUSG00000054469.15	ENSMUST00000067545.8	4467	6	132517	5	36361	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAGCTGTTGTGATTCTG	NA	False	NA	11	True	AATAAA	-21	NA	73547505	73550358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_73547500_73550400
ENSMUSG00000054469.15_2	chr17	+	4363	6	NIC	ENSMUSG00000054469.15	novel	4467	6	NA	NA	52	-20	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	29.4659125092029	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAATTACATGGTTCAAAA	NA	False	NA	-4	True	AATAAA	-6	NA	73415040	73550343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_73415141_73468817_73468987_73476490_73476690_73494869_73495017_73503673_73503791_73546712
ENSMUSG00000054474.16_0	chr6	-	1748	9	FSM	ENSMUSG00000054474.16	ENSMUST00000160918.8	2077	9	94	235	2	-3	multi-exon	TRUE	canonical	1	2	junction_8	2.47171499166065	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGGTGGGTGTTTTGTTTT	NA	False	NA	-3	True	NA	NA	NA	71121329	71105384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_71105837_71106195_71106348_71108631_71108758_71108858_71109008_71111064_71111296_71115634_71115788_71116732_71116928_71118203_71118439_71121274
ENSMUSG00000054477.17_0	chr18	+	2726	8	FSM	ENSMUSG00000054477.17	ENSMUST00000211323.3	1725	8	-681	-320	4	0	multi-exon	FALSE	canonical	2	15	junction_3	2.55550625999976	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACATTTGTTTGGTCTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	45692539	45818949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_45693692_45694287_45694384_45725072_45725492_45788264_45788407_45803284_45803396_45810003_45810132_45816137_45816208_45818341
ENSMUSG00000054484.15_0	chr2	+	2616	14	FSM	ENSMUSG00000054484.15	ENSMUST00000067582.14	2921	14	275	30	-241	-30	multi-exon	FALSE	canonical	2	3	junction_2	3.93136379667097	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGATAAGTATTAACAAAGAA	NA	False	NA	NA	False	NA	NA	NA	120807772	120838303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120807960_120808179_120808292_120809611_120809750_120810953_120811000_120814814_120814957_120817063_120817189_120817316_120817440_120820811_120820968_120823958_120824119_120826886_120827001_120829554_120829640_120832977_120833083_120835162_120835282_120837299
ENSMUSG00000054499.10_1	chr7	-	1816	5	NIC	ENSMUSG00000054499.10	novel	1828	5	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_4	23.466731770743	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCAGGCTCTCCGGTACT	NA	False	NA	-8	True	AATAAA	-27	NA	24919295	24902264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918593_24919211
ENSMUSG00000054499.10_14	chr7	-	1838	5	FSM	ENSMUSG00000054499.10	ENSMUST00000058702.7	1828	5	-10	0	2	0	multi-exon	FALSE	canonical	2	7	junction_4	35.6405667743935	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCAGGCTCTCCGGTACT	NA	False	NA	-8	True	AATAAA	-27	NA	24919294	24902264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918593_24919188
ENSMUSG00000054499.10_2	chr7	-	1834	4	ISM	ENSMUSG00000054499.10	ENSMUST00000058702.7	1828	5	590	0	590	0	3prime_fragment	FALSE	canonical	3	80	junction_2	8.17856276425687	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCAGGCTCTCCGGTACT	NA	False	NA	-8	True	AATAAA	-27	NA	24918694	24902264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225
ENSMUSG00000054499.10_3	chr7	-	1682	5	FSM	ENSMUSG00000054499.10	ENSMUST00000206750.2	4594	5	-13	2925	-1	0	multi-exon	FALSE	canonical	3	21	junction_4	29.7237278954037	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCAGGCTCTCCGGTACT	NA	False	NA	-8	True	AATAAA	-27	NA	24919297	24902264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918457_24919211
ENSMUSG00000054499.10_4	chr7	-	2294	1	NIC	ENSMUSG00000054499.10	novel	4594	5	NA	NA	14728	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGCTCTCCGGTACTTT	NA	False	NA	-6	True	AATAAA	-29	NA	24904556	24902262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_24902300_24904600
ENSMUSG00000054499.10_5	chr7	-	1728	5	NIC	ENSMUSG00000054499.10	novel	1942	6	NA	NA	-23	1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	38.1903129078566	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGGCTCTCCGGTACTT	NA	False	NA	-7	True	AATAAA	-28	NA	24919319	24902263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918457_24919188
ENSMUSG00000054499.10_9	chr7	-	1976	6	NIC	ENSMUSG00000054499.10	novel	1942	6	NA	NA	-56	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	36.5316301306142	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCAGGCTCTCCGGTACT	NA	False	NA	-8	True	AATAAA	-27	NA	24920096	24902264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918593_24919211_24919353_24919993
ENSMUSG00000054509.8_0	chr14	+	6077	36	NNC	ENSMUSG00000054509.8	novel	6387	35	NA	NA	19	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	5.02759730824552	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACTAATACTAGATGCT	1106	False	NA	-5	True	AATAAA	-7	NA	56813094	56897242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_56813188_56821615_56821749_56823013_56823210_56825205_56825270_56825875_56825952_56827335_56827438_56827820_56827971_56829747_56829886_56830680_56830855_56832710_56832872_56835032_56835171_56835788_56835885_56839720_56839905_56840207_56840365_56844878_56845004_56845817_56845950_56848210_56848298_56851110_56851276_56851856_56851904_56852143_56852223_56853788_56853927_56857910_56858107_56859640_56859709_56861473_56861662_56864846_56864947_56866530_56866702_56866923_56867005_56871668_56871750_56873183_56873280_56875304_56875428_56878711_56878775_56884630_56885204_56885485_56886407_56889704_56889805_56892938_56893072_56896694
ENSMUSG00000054509.8_12	chr14	+	6353	35	FSM	ENSMUSG00000054509.8	ENSMUST00000161553.2	6387	35	28	6	28	-4	multi-exon	FALSE	canonical	2	8	junction_14	4.43757157942172	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAATACTAGATGCTGTC	1115	False	NA	-2	True	AATAAA	-10	NA	56813103	56897245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_56813188_56821615_56821749_56823013_56823210_56825205_56825270_56825875_56825952_56827335_56827438_56827820_56827971_56829747_56829886_56830680_56830855_56832710_56832872_56835032_56835171_56835788_56835885_56839720_56839905_56840207_56840365_56844878_56845004_56845817_56845950_56848210_56848298_56851110_56851276_56851856_56851904_56852143_56852223_56853788_56853927_56857910_56858107_56859640_56859709_56861473_56861662_56864846_56864947_56866530_56866702_56866923_56867005_56871668_56871750_56873183_56873280_56875304_56875428_56878711_56878775_56884630_56886407_56889704_56889805_56892938_56893072_56896694
ENSMUSG00000054509.8_9	chr14	+	1319	4	ISM	ENSMUSG00000054509.8	ENSMUST00000161553.2	6387	35	72800	2	-6916	0	3prime_fragment	FALSE	canonical	3	15	junction_1	3.09120616516523	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTAGATGCTGTCTCAG	NA	False	NA	2	True	AATAAA	-14	NA	56885875	56897249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56886407_56889704_56889805_56892938_56893072_56896694
ENSMUSG00000054517.10_0	chr11	-	3276	5	NIC	ENSMUSG00000054517.10	novel	3048	6	NA	NA	31	-3	intron_retention	FALSE	canonical	1	1	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGATTAAGCATCTCTTT	8182	False	NA	NA	False	TATAAA	-11	NA	116021919	116015536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116017467_116017987_116018054_116018263_116018442_116018523_116019118_116021411
ENSMUSG00000054517.10_1	chr11	-	2924	6	FSM	ENSMUSG00000054517.10	ENSMUST00000067632.4	3048	6	119	5	117	-5	multi-exon	FALSE	canonical	1	1	junction_2	0.489897948556636	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATGATTAAGCATCTCT	8268	False	NA	NA	False	TATAAA	-9	NA	116021833	116015538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116017467_116017987_116018054_116018263_116018442_116018523_116018758_116019021_116019118_116021411
ENSMUSG00000054519.9_0	chr11	-	2790	4	FSM	ENSMUSG00000054519.9	ENSMUST00000057799.8	3412	4	20	602	20	-602	multi-exon	FALSE	canonical	2	7	junction_3	2.86744175568088	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCCCTGTCTGTAGCTA	NA	False	NA	NA	False	AATAAA	-19	NA	59363280	59352624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_59355113_59355837_59355899_59356276_59356404_59363166
ENSMUSG00000054519.9_3	chr11	-	2649	3	NIC	ENSMUSG00000054519.9	novel	3412	4	NA	NA	36	-600	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCCTGTCTGTAGCTATT	NA	False	NA	NA	False	AATAAA	-21	NA	59363264	59352622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_59355113_59355837_59355899_59363166
ENSMUSG00000054520.16_0	chr5	+	2910	13	FSM	ENSMUSG00000054520.16	ENSMUST00000067638.14	2885	13	-48	23	-40	-7	multi-exon	FALSE	canonical	0	0	junction_5	1.59861050777091	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTATTATTTTTATGC	NA	False	NA	NA	False	AATAAA	-11	NA	34683141	34720962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34683246_34708904_34709045_34710080_34710184_34712800_34712919_34713285_34713357_34714234_34714324_34714638_34714708_34716344_34716994_34717687_34717797_34718032_34718089_34718369_34718452_34718946_34719007_34719702
ENSMUSG00000054568.8_0	chr7	+	2658	3	FSM	ENSMUSG00000054568.8	ENSMUST00000067695.8	2656	3	-6	4	-6	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATCTTGTCTGCTTCTTT	NA	False	NA	NA	False	AATAAA	-13	NA	104506209	104511870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_104506316_104508521_104508628_104509424
ENSMUSG00000054598.14_0	chr5	-	268	1	Genic_Genomic	ENSMUSG00000054598.14	novel	NA	NA	NA	NA	356	83	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTTTCTAAGTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	66157205	66156937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_-_66156900_66157200
ENSMUSG00000054604.8_1	chr16	+	4261	3	NNC	ENSMUSG00000054604.8	novel	4425	3	NA	NA	33	-128	at_least_one_novel_splicesite	FALSE	canonical	3	384	junction_2	450.5	610	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCGTACTCCTGTGCT	NA	False	NA	32	True	ATTAAA	-14	NA	64672391	64679742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_64672600_64673161_64673389_64675916
ENSMUSG00000054604.8_18	chr16	+	2803	1	ISM	ENSMUSG00000054604.8	ENSMUST00000067744.8	4425	3	4581	128	3875	-128	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCGTACTCCTGTGCT	NA	False	NA	32	True	ATTAAA	-14	NA	64676939	64679742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_64676900_64679700
ENSMUSG00000054604.8_2	chr16	+	4265	3	FSM	ENSMUSG00000054604.8	ENSMUST00000067744.8	4425	3	32	128	32	-128	multi-exon	FALSE	canonical	3	981	junction_2	152	1795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCGTACTCCTGTGCT	NA	False	NA	32	True	ATTAAA	-14	NA	64672390	64679742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_64672600_64673161_64673389_64675913
ENSMUSG00000054604.8_3	chr16	+	4514	2	FSM	ENSMUSG00000054604.8	ENSMUST00000136532.2	760	2	-361	-3393	345	-128	multi-exon	FALSE	canonical	3	981	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCGTACTCCTGTGCT	NA	False	NA	32	True	ATTAAA	-14	NA	64672703	64679742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_64673389_64675913
ENSMUSG00000054611.18_0	chr19	-	5321	10	NIC	ENSMUSG00000054611.18	novel	8578	21	NA	NA	-10	15	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	36.3402983470227	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAAAACTAACCCCT	4161	False	NA	22	True	AATAAA	-9	NA	4384039	4366182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4383670
ENSMUSG00000054611.18_1	chr19	-	2266	1	ISM	ENSMUSG00000054611.18	ENSMUST00000047898.14	8578	21	79865	1736	4128	15	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAAAACTAACCCCT	8914	False	NA	22	True	AATAAA	-9	NA	4368448	4366182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4366200_4368400
ENSMUSG00000054611.18_2	chr19	-	7138	21	FSM	ENSMUSG00000054611.18	ENSMUST00000047898.14	8578	21	-296	1736	-296	15	multi-exon	FALSE	canonical	3	19	junction_20	31.2315545562497	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAAAACTAACCCCT	NA	False	NA	22	True	AATAAA	-9	NA	4448609	4366182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4392874_4393270_4395545_4395673_4398673_4398790_4400204_4400359_4401764_4401859_4402295_4402403_4406775_4406955_4411565_4411613_4412004_4412084_4412803_4412943_4444819_4444921_4447961
ENSMUSG00000054611.18_37	chr19	-	3204	12	ISM	ENSMUSG00000054611.18	ENSMUST00000116571.9	2413	13	7	594	4	-594	5prime_fragment	FALSE	canonical	3	58	junction_11	21.4707180955177	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATATCTGTGGATTGATT	NA	False	NA	NA	False	NA	NA	NA	4447101	4391971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4393270_4395545_4395673_4398673_4398790_4400204_4400359_4401764_4401859_4402295_4402403_4406775_4406955_4411565_4411613_4412004_4412084_4412803_4412943_4444819_4444921_4446338
ENSMUSG00000054611.18_41	chr19	-	193	1	NIC	ENSMUSG00000054611.18	novel	1128	4	NA	NA	8315	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	1822	False	NA	NA	False	NA	NA	NA	4438630	4438437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4438400_4438600
ENSMUSG00000054611.18_5	chr19	-	7255	21	FSM	ENSMUSG00000054611.18	ENSMUST00000075856.11	7242	21	2	-15	2	15	multi-exon	FALSE	canonical	3	58	junction_20	26.1194850638369	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAAAACTAACCCCT	NA	False	NA	22	True	AATAAA	-9	NA	4447103	4366182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4392874_4393270_4395545_4395673_4398673_4398790_4400204_4400359_4401764_4401859_4402295_4402403_4406775_4406955_4411565_4411613_4412004_4412084_4412803_4412943_4444819_4444921_4446338
ENSMUSG00000054611.18_7	chr19	-	3851	5	ISM	ENSMUSG00000054611.18	ENSMUST00000075856.11	7242	21	72556	-15	344	15	3prime_fragment	FALSE	canonical	3	131	junction_4	11.8611761642765	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAAAACTAACCCCT	2813	False	NA	22	True	AATAAA	-9	NA	4374549	4366182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364
ENSMUSG00000054612.5_0	chr7	+	833	5	FSM	ENSMUSG00000054612.5	ENSMUST00000081510.4	2894	5	-19	2080	-19	-2080	multi-exon	FALSE	canonical	3	172	junction_1	21.7887585695009	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGTGATGTGGCTGCCCTT	NA	False	NA	31	True	ATTAAA	-22	NA	136496323	136729915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_136496417_136552996_136553134_136687677_136687839_136723217_136723358_136729613
ENSMUSG00000054612.5_3	chr7	+	701	4	NIC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	-24	-2080	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	106.094297678999	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGTGATGTGGCTGCCCTT	NA	False	NA	31	True	ATTAAA	-22	NA	136496318	136729915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_136496417_136687677_136687839_136723217_136723358_136729613
ENSMUSG00000054612.5_5	chr7	+	678	4	NIC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	-19	-2074	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	91.8634251968045	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGGCTGCCCTTTCTTGT	NA	False	NA	37	True	ATTAAA	-28	NA	136496323	136729921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_136496417_136552996_136553134_136723217_136723358_136729613
ENSMUSG00000054619.8_1	chr15	+	1887	2	FSM	ENSMUSG00000054619.8	ENSMUST00000067752.5	1946	2	50	9	22	-9	multi-exon	FALSE	canonical	3	19	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATATGCCTGCTTGGCTGC	588	False	NA	3	True	AATAAA	-38	NA	100202691	100212227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_100203226_100210874
ENSMUSG00000054619.8_2	chr15	+	946	1	ISM	ENSMUSG00000054619.8	ENSMUST00000067752.5	1946	2	8640	9	8230	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATATGCCTGCTTGGCTGC	9178	False	NA	3	True	AATAAA	-38	NA	100211281	100212227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_100211300_100212200
ENSMUSG00000054619.8_3	chr15	+	971	1	NIC	ENSMUSG00000054619.8	novel	674	3	NA	NA	11	426	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAGGATACTGGTTCTGT	577	False	NA	NA	False	NA	NA	NA	100202680	100203651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_100202700_100203700
ENSMUSG00000054626.12_0	chrX	-	1024	8	FSM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	1	7	1	-7	multi-exon	FALSE	canonical	3	95	junction_7	69.0238054173031	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATATGTGAGTGGCAA	NA	False	NA	NA	False	AATAAA	-6	NA	52799662	52785721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799598
ENSMUSG00000054626.12_1	chrX	-	973	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	4	7	4	-7	multi-exon	FALSE	canonical	3	140	junction_7	54.1238187409392	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATATGTGAGTGGCAA	NA	False	NA	NA	False	AATAAA	-6	NA	52799659	52785721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
ENSMUSG00000054626.12_3	chrX	-	1004	8	NNC	ENSMUSG00000054626.12	novel	1032	8	NA	NA	3	-7	at_least_one_novel_splicesite	TRUE	canonical	3	47	junction_7	85.2532840949813	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATATGTGAGTGGCAA	NA	False	NA	NA	False	AATAAA	-6	NA	52799660	52785721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798218_52799598
ENSMUSG00000054626.12_4	chrX	-	979	8	NIC	ENSMUSG00000054626.12	novel	984	8	NA	NA	6	-7	combination_of_known_junctions	FALSE	canonical	3	13	junction_7	96.8662026946953	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATATGTGAGTGGCAA	NA	False	NA	NA	False	AATAAA	-6	NA	52799657	52785721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799590
ENSMUSG00000054626.12_6	chrX	-	2370	7	ISM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	18	7	18	-7	intron_retention	FALSE	canonical	3	257	junction_1	21.338541031039	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATATGTGAGTGGCAA	NA	False	NA	NA	False	AATAAA	-6	NA	52799645	52785721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109
ENSMUSG00000054648.9_0	chr8	-	3150	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238418.2	3180	5	25	5	-4	-2	multi-exon	FALSE	canonical	3	68	junction_4	9.33742469849155	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTGCTTTGTCAATGT	NA	False	NA	-5	True	NA	NA	NA	70169527	70157791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70169417
ENSMUSG00000054648.9_1	chr8	-	1666	1	ISM	ENSMUSG00000054648.9	ENSMUST00000238292.2	6080	5	10030	2486	1619	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTGCTTTGTCAATGT	NA	False	NA	-5	True	NA	NA	NA	70159457	70157791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_70157800_70159500
ENSMUSG00000054648.9_3	chr8	-	3258	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238292.2	6080	5	336	2486	-15	-2	multi-exon	FALSE	canonical	3	12	junction_4	30.1029483605842	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTGCTTTGTCAATGT	NA	False	NA	-5	True	NA	NA	NA	70169151	70157791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70168933
ENSMUSG00000054648.9_4	chr8	-	3040	4	FSM	ENSMUSG00000054648.9	ENSMUST00000080987.7	1590	4	-260	-1190	-260	-2	multi-exon	FALSE	canonical	3	71	junction_1	9.2736184954957	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTGCTTTGTCAATGT	NA	False	NA	-5	True	NA	NA	NA	70163634	70157791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335
ENSMUSG00000054648.9_5	chr8	-	3314	4	NIC	ENSMUSG00000054648.9	novel	3180	5	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	68	junction_3	10.6770782520313	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTGCTTTGTCAATGT	NA	False	NA	-5	True	NA	NA	NA	70169524	70157791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70160345_70160760_70161116_70163335_70163635_70169417
ENSMUSG00000054648.9_9	chr8	-	3138	5	NIC	ENSMUSG00000054648.9	novel	3180	5	NA	NA	-1	-2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	34.7167106736799	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTGCTTTGTCAATGT	NA	False	NA	-5	True	NA	NA	NA	70169524	70157791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163626_70169417
ENSMUSG00000054659.14_0	chr4	-	5504	7	FSM	ENSMUSG00000054659.14	ENSMUST00000098181.9	1445	7	-238	-3821	66	3821	multi-exon	FALSE	canonical	3	17	junction_1	3.71558280160133	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATCTAAAATGTCT	NA	False	NA	NA	False	ATTAAA	-7	NA	33189671	33170408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_33174481_33174743_33174852_33179204_33179341_33181704_33181860_33183076_33183220_33187047_33187197_33188930
ENSMUSG00000054659.14_2	chr4	-	1315	4	FSM	ENSMUSG00000054659.14	ENSMUST00000119167.2	1339	4	27	-3	27	3	multi-exon	FALSE	canonical	3	23	junction_1	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTGCTGATTTTTAG	NA	False	NA	NA	False	ATTAAA	-17	NA	33189710	33181616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_33181860_33183076_33183220_33187047_33187197_33188930
ENSMUSG00000054662.9_12	chr7	-	3261	22	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	95	junction_6	23.6339238865797	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGAGCCTCATGATGT	NA	False	NA	-22	True	AATAAA	-14	NA	140697720	140681138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
ENSMUSG00000054662.9_14	chr7	-	3372	21	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-14	0	intron_retention	FALSE	canonical	3	117	junction_16	20.2598124374339	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGCCTCATGATGTA	NA	False	NA	-21	True	AATAAA	-15	NA	140697733	140681137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
ENSMUSG00000054662.9_17	chr7	-	3113	23	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-11	-1	intron_retention	FALSE	canonical	3	82	junction_9	28.5868619768933	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGAGCCTCATGATGT	NA	False	NA	-22	True	AATAAA	-14	NA	140697730	140681138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
ENSMUSG00000054662.9_9	chr7	-	3007	24	FSM	ENSMUSG00000054662.9	ENSMUST00000067836.9	3019	24	-2	14	-2	-1	multi-exon	FALSE	canonical	3	82	junction_10	30.0592986723404	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGAGCCTCATGATGT	NA	False	NA	-22	True	AATAAA	-14	NA	140697721	140681138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
ENSMUSG00000054675.6_0	chr5	-	2135	2	FSM	ENSMUSG00000054675.6	ENSMUST00000067853.6	2242	2	106	1	36	-1	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTCTCTGGATTATCTGC	6798	False	NA	NA	False	AATAAA	-16	NA	113938471	113931790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_113933815_113938360
ENSMUSG00000054676.18_1	chr7	+	2432	3	NNC	ENSMUSG00000054676.18	novel	3340	3	NA	NA	-446	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTTCATATCTTTCTG	NA	False	NA	8	True	TTTAAA	-4	NA	37882195	37896015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_37882570_37888030_37888202_37894128
ENSMUSG00000054676.18_2	chr7	+	2147	3	FSM	ENSMUSG00000054676.18	ENSMUST00000178876.10	3282	3	157	978	-38	-2	multi-exon	FALSE	canonical	3	43	junction_1	1.5	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTATTTCATATCTTTCT	NA	False	NA	7	True	TTTAAA	-3	NA	37883234	37896014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_37883325_37888030_37888202_37894128
ENSMUSG00000054679.9_2	chr4	+	2872	5	FSM	ENSMUSG00000054679.9	ENSMUST00000108159.2	829	5	5	-2048	5	1	multi-exon	FALSE	canonical	2	4	junction_3	2.44948974278318	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTTGATGTGCTGTCCT	-22	True	NA	NA	False	AATAAA	-14	NA	33209267	33233341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_33209371_33223567_33223673_33225764_33225869_33226027_33226170_33230923
ENSMUSG00000054679.9_3	chr4	+	3019	4	NIC	ENSMUSG00000054679.9	novel	829	5	NA	NA	15	-1	intron_retention	FALSE	canonical	3	8	junction_3	0.942809041582063	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAGTTTGATGTGCTGTC	-12	True	NA	NA	False	AATAAA	-12	NA	33209277	33233339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_33209371_33223567_33223673_33225764_33226170_33230923
ENSMUSG00000054693.15_0	chr9	+	4604	16	FSM	ENSMUSG00000054693.15	ENSMUST00000067880.13	4593	16	-18	7	-18	-7	multi-exon	FALSE	canonical	3	235	junction_13	22.3632635264971	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAACTTGAGGTCTATG	4932	False	NA	7	True	AATAAA	-12	NA	70586260	70687504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_70586542_70610568_70610720_70625939_70626059_70629894_70630054_70647356_70647458_70651132_70651286_70653515_70653609_70655364_70655549_70661443_70661608_70668864_70669049_70673233_70673385_70674153_70674338_70675090_70675200_70676073_70676295_70683654_70683782_70685281
ENSMUSG00000054693.15_24	chr9	+	3324	8	ISM	ENSMUSG00000054693.15	ENSMUST00000067880.13	4593	16	75204	7	-21852	-7	3prime_fragment	FALSE	canonical	3	235	junction_5	25.4998999597878	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAACTTGAGGTCTATG	2948	False	NA	7	True	AATAAA	-12	NA	70661482	70687504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_70661608_70668864_70669049_70673233_70673385_70674153_70674338_70675090_70675200_70676073_70676295_70683654_70683782_70685281
ENSMUSG00000054693.15_32	chr9	+	1924	1	ISM	ENSMUSG00000054693.15	ENSMUST00000067880.13	4593	16	99302	7	2246	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAACTTGAGGTCTATG	6446	False	NA	7	True	AATAAA	-12	NA	70685580	70687504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_70685600_70687500
ENSMUSG00000054708.18_14	chr10	+	3857	8	NIC	ENSMUSG00000054708.18	novel	4635	18	NA	NA	-366	-11	intron_retention	FALSE	canonical	3	11	junction_4	37.6785545023659	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATTTAAAGAAACCAAGT	NA	False	NA	NA	False	AATAAA	-15	NA	81476399	81483430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_81476647_81476725_81476825_81477809_81477883_81478134_81478254_81478350_81480978_81482138_81482268_81482626_81482693_81482933
ENSMUSG00000054708.18_17	chr10	+	781	4	ISM	ENSMUSG00000054708.18	ENSMUST00000154707.8	4635	18	10109	4	9	-4	3prime_fragment	FALSE	canonical	3	46	junction_1	24.7521042876493	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAACCAAGTCGCAAGA	NA	False	NA	NA	False	AATAAA	-22	NA	81479645	81483437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81479728_81482138_81482268_81482626_81482693_81482933
ENSMUSG00000054708.18_18	chr10	+	1768	1	NIC	ENSMUSG00000054708.18	novel	3561	20	NA	NA	-946	-1343	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTGTGTGTGTGAGAC	NA	False	NA	NA	False	AAAAAG	-23	NA	81478690	81480458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_81478700_81480500
ENSMUSG00000054708.18_19	chr10	+	916	5	FSM	ENSMUSG00000054708.18	ENSMUST00000132458.2	829	5	42	-129	42	-4	multi-exon	FALSE	canonical	3	22	junction_1	34.9070193514141	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAACCAAGTCGCAAGA	NA	False	NA	NA	False	AATAAA	-22	NA	81479678	81483437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81479728_81480809_81480978_81482138_81482268_81482626_81482693_81482933
ENSMUSG00000054708.18_21	chr10	+	124	1	ISM	ENSMUSG00000054708.18	ENSMUST00000119336.8	3561	20	18845	7	848	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAACCAAGTCGCAAGA	NA	False	NA	NA	False	AATAAA	-22	NA	81483313	81483437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81483300_81483400
ENSMUSG00000054708.18_32	chr10	+	2310	4	FSM	ENSMUSG00000054708.18	ENSMUST00000137978.2	3690	4	2	1378	2	-1378	multi-exon	FALSE	canonical	3	11	junction_3	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAAAAAGCGAACAA	NA	False	NA	NA	False	NA	NA	NA	81476779	81480423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81476825_81477809_81477883_81478134_81478254_81478350
ENSMUSG00000054708.18_44	chr10	+	3399	3	NIC	ENSMUSG00000054708.18	novel	4635	18	NA	NA	-194	0	intron_retention	FALSE	canonical	3	98	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAGTCGCAAGAGTTG	NA	False	NA	NA	False	AATAAA	-26	NA	81479442	81483441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_81482268_81482626_81482693_81482933
ENSMUSG00000054708.18_5	chr10	+	3496	20	NIC	ENSMUSG00000054708.18	novel	4635	18	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_12	28.2233866994502	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAGTCGCAAGAGTTG	7966	False	NA	NA	False	AATAAA	-26	NA	81469532	81483441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_81469590_81470500_81470588_81470698_81470830_81470903_81470993_81471521_81471587_81472202_81472261_81473902_81473974_81474104_81474212_81474394_81474583_81475140_81475179_81475689_81475771_81475861_81475970_81476601_81476647_81476725_81476825_81477809_81477883_81478134_81478254_81478350_81479728_81482138_81482268_81482626_81482693_81482933
ENSMUSG00000054715.12_0	chr7	+	2766	2	NIC	ENSMUSG00000054715.12	novel	1826	3	NA	NA	8	-139	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTCCATGTCTCCTCTT	NA	False	NA	10	True	AATACA	-14	NA	12631749	12642871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_12631805_12640160
ENSMUSG00000054715.12_1	chr7	+	3292	3	FSM	ENSMUSG00000054715.12	ENSMUST00000055528.11	2620	3	33	-705	7	-139	multi-exon	FALSE	canonical	2	3	junction_1	9	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTCCATGTCTCCTCTT	NA	False	NA	10	True	AATACA	-14	NA	12631774	12642871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12631871_12637527_12638013_12640160
ENSMUSG00000054715.12_10	chr7	+	2938	2	ISM	ENSMUSG00000054715.12	ENSMUST00000055528.11	2620	3	6043	-704	5991	-140	3prime_fragment	FALSE	canonical	3	21	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTTCCATGTCTCCTCT	NA	False	NA	9	True	AATACA	-13	NA	12637784	12642870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_12638013_12640160
ENSMUSG00000054715.12_11	chr7	+	1702	1	ISM	ENSMUSG00000054715.12	ENSMUST00000117189.2	2995	2	9510	36	9479	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATCCTACCACATGG	NA	False	NA	-6	True	AATAAA	-5	NA	12641272	12642974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_12641300_12643000
ENSMUSG00000054715.12_2	chr7	+	2815	2	FSM	ENSMUSG00000054715.12	ENSMUST00000119989.3	2087	2	-25	-703	1	-137	multi-exon	FALSE	canonical	3	22	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCATGTCTCCTCTTGT	NA	False	NA	12	True	AATACA	-16	NA	12631768	12642873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12631871_12640160
ENSMUSG00000054715.12_3	chr7	+	2837	2	FSM	ENSMUSG00000054715.12	ENSMUST00000117189.2	2995	2	18	140	-13	-140	multi-exon	FALSE	canonical	3	21	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTTCCATGTCTCCTCT	NA	False	NA	9	True	AATACA	-13	NA	12631780	12642870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12631908_12640160
ENSMUSG00000054715.12_7	chr7	+	3306	3	NIC	ENSMUSG00000054715.12	novel	2620	3	NA	NA	11	-132	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	7.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTCTCCTCTTGTGGCTT	NA	False	NA	17	True	AATACA	-21	NA	12631804	12642878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_12631908_12637527_12638013_12640160
ENSMUSG00000054716.5_0	chr7	+	1213	3	FSM	ENSMUSG00000054716.5	ENSMUST00000052509.6	1484	3	269	2	269	-2	multi-exon	FALSE	canonical	3	88	junction_1	20	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCACGATGCCTGTAAGT	NA	False	NA	29	True	AATAAA	-14	NA	126843714	126853973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126843781_126844156_126844307_126852976
ENSMUSG00000054716.5_1	chr7	+	1224	3	NNC	ENSMUSG00000054716.5	novel	1484	3	NA	NA	269	-4	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	61.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTCACGATGCCTGTAA	NA	False	NA	27	True	AATAAA	-12	NA	126843714	126853971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_126843781_126844143_126844307_126852976
ENSMUSG00000054716.5_3	chr7	+	997	1	NIC	ENSMUSG00000054716.5	novel	1484	3	NA	NA	8616	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTCACGATGCCTGTAA	5061	False	NA	27	True	AATAAA	-12	NA	126852974	126853971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_126853000_126854000
ENSMUSG00000054717.8_11	chr8	+	1021	4	ISM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	664	1512	23	1278	3prime_fragment	FALSE	canonical	3	6480	junction_3	312.16377467961	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGCATTGTGTTTGTAT	NA	False	NA	2	True	AATAAA	-13	NA	57965604	57967521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_57965783_57966095_57966242_57966323_57966499_57966999
ENSMUSG00000054717.8_12	chr8	+	1092	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	24	1512	24	1278	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	2246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGCATTGTGTTTGTAT	NA	False	NA	2	True	AATAAA	-13	NA	57964964	57967521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
ENSMUSG00000054717.8_13	chr8	+	1088	5	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	24	1278	at_least_one_novel_splicesite	FALSE	canonical	3	1278	junction_1	2424.68941310016	659	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGCATTGTGTTTGTAT	NA	False	NA	2	True	AATAAA	-13	NA	57964964	57967521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_57965040_57965612_57965783_57966095_57966242_57966323_57966499_57966999
ENSMUSG00000054720.13_0	chr5	+	2932	4	FSM	ENSMUSG00000054720.13	ENSMUST00000067924.13	6976	4	-24	4068	-24	2078	multi-exon	FALSE	canonical	3	25	junction_1	0.471404520791032	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTAATATTTTAAAGTT	NA	False	NA	NA	False	AATAAA	-20	NA	105667229	105756816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_105667497_105692065_105692137_105727333_105727476_105754364
ENSMUSG00000054720.13_1	chr5	+	3037	5	NIC	ENSMUSG00000054720.13	novel	6976	4	NA	NA	-7	2078	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	12.7549010188241	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTAATATTTTAAAGTT	NA	False	NA	NA	False	AATAAA	-20	NA	105667246	105756816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_105667497_105670495_105670618_105692065_105692137_105727333_105727476_105754364
ENSMUSG00000054720.13_2	chr5	+	2669	3	NNC	ENSMUSG00000054720.13	novel	6976	4	NA	NA	-13482	2078	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	10.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTAATATTTTAAAGTT	8888	False	NA	NA	False	AATAAA	-20	NA	105693241	105756816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_105693317_105727333_105727476_105754364
ENSMUSG00000054723.7_1	chr17	-	2087	2	FSM	ENSMUSG00000054723.7	ENSMUST00000067931.7	2226	2	137	2	137	-2	multi-exon	FALSE	canonical	3	64	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGACTCTACCTTTTT	7705	False	NA	-8	True	AATAAA	-14	NA	57023840	57020937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57022818_57023633
ENSMUSG00000054723.7_2	chr17	-	2060	2	FSM	ENSMUSG00000054723.7	ENSMUST00000233400.2	345	2	-30	-1685	-30	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGACTCTACCTTTTT	6493	False	NA	-8	True	AATAAA	-14	NA	57025052	57020937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57022818_57024872
ENSMUSG00000054723.7_4	chr17	-	993	1	ISM	ENSMUSG00000054723.7	ENSMUST00000067931.7	2226	2	2047	2	2047	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGACTCTACCTTTTT	9615	False	NA	-8	True	AATAAA	-14	NA	57021930	57020937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_57020900_57021900
ENSMUSG00000054723.7_5	chr17	-	1982	2	FSM	ENSMUSG00000054723.7	ENSMUST00000164907.3	1965	2	-19	2	-14	-2	multi-exon	FALSE	canonical	2	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGACTCTACCTTTTT	6846	False	NA	-8	True	AATAAA	-14	NA	57024699	57020937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57022818_57024597
ENSMUSG00000054727.3_0	chrX	-	1235	9	FSM	ENSMUSG00000054727.3	ENSMUST00000067940.3	1224	9	-12	1	-12	-1	multi-exon	FALSE	canonical	3	1101	junction_5	153.190241203544	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTGACTTTAGTATATT	NA	False	NA	-12	True	AGTAAA	-16	NA	52759810	52744868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
ENSMUSG00000054727.3_5	chrX	-	3306	8	NIC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-10	-1	intron_retention	FALSE	canonical	3	1225	junction_3	142.325008917145	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTGACTTTAGTATATT	NA	False	NA	-12	True	AGTAAA	-16	NA	52759808	52744868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52752016_52752989_52753054_52753476_52753824_52759728
ENSMUSG00000054728.18_0	chr13	+	3837	5	FSM	ENSMUSG00000054728.18	ENSMUST00000136576.8	716	5	-38	-3083	-38	-19	multi-exon	FALSE	canonical	3	6	junction_4	2.29128784747792	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAGTTTAAAA	NA	False	NA	-8	True	NA	NA	NA	43276294	43291970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_43276531_43281613_43281676_43286395_43286537_43287402_43287480_43288649
ENSMUSG00000054733.10_0	chr14	-	1326	6	ISM	ENSMUSG00000054733.10	ENSMUST00000067927.9	1860	11	14994	4	8	-3	3prime_fragment	FALSE	canonical	3	54	junction_3	9.47839648885823	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGCAACCGCCTGCTGTG	NA	False	NA	-8	True	AATAAA	-16	NA	64678358	64360077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512_64522633_64551135_64551205_64678158
ENSMUSG00000054733.10_2	chr14	-	1213	5	NIC	ENSMUSG00000054733.10	novel	1860	11	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	31.7686952832501	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACCGCCTGCTGTGAGTC	NA	False	NA	-4	True	AATAAA	-20	NA	64678361	64360073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_64360803_64447876_64447984_64471277_64471383_64551135_64551205_64678158
ENSMUSG00000054737.12_0	chrX	-	3128	5	FSM	ENSMUSG00000054737.12	ENSMUST00000115334.8	3160	5	29	3	-20	-3	multi-exon	FALSE	canonical	3	41	junction_2	3.67423461417477	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCATATTGTATTCCTT	3265	False	NA	-8	True	NA	NA	NA	20928262	20895184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_20897892_20902575_20902711_20902866_20903012_20926741_20926797_20928176
ENSMUSG00000054752.17_0	chr4	+	671	4	FSM	ENSMUSG00000054752.17	ENSMUST00000107643.8	2350	4	-51	1730	-32	-1730	multi-exon	FALSE	canonical	3	14	junction_1	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGCATCTACTTGTG	12	True	NA	NA	False	AATAAA	-18	NA	53631438	53650060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_53631613_53646986_53647083_53647669_53647802_53649791
ENSMUSG00000054752.17_1	chr4	+	7492	13	FSM	ENSMUSG00000054752.17	ENSMUST00000132151.8	7467	13	-26	1	-26	-1	multi-exon	FALSE	canonical	2	2	junction_4	8.3877390676312	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTGTCCATTTTTTAT	18	True	NA	7	True	ATTAAA	-16	NA	53631444	53707008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_53631613_53646986_53647083_53647669_53647802_53649791_53649894_53655740_53655764_53659512_53659635_53679793_53680004_53682099_53682199_53686387_53686518_53693983_53694085_53694607_53694860_53696889_53696979_53701040
ENSMUSG00000054752.17_4	chr4	+	7124	11	ISM	ENSMUSG00000054752.17	ENSMUST00000180164.2	7340	13	4495	0	4495	0	3prime_fragment	FALSE	canonical	2	2	junction_2	9.16515138991168	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGTCCATTTTTTATT	NA	False	NA	8	True	ATTAAA	-17	NA	53647774	53707009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_53647802_53649791_53649894_53655740_53655764_53659512_53659635_53679793_53680004_53682099_53682199_53686387_53686518_53693983_53694085_53694607_53694860_53696889_53696979_53701040
ENSMUSG00000054752.17_6	chr4	+	7069	8	NNC	ENSMUSG00000054752.17	novel	7467	13	NA	NA	25597	-2	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_7	4.94871659305393	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGTGTCCATTTTTTA	NA	False	NA	6	True	ATTAAA	-15	NA	53668876	53707007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_53669098_53679793_53680004_53682099_53682199_53686387_53686518_53693983_53694085_53694607_53694860_53696889_53696979_53701040
ENSMUSG00000054752.17_7	chr4	+	7100	8	NNC	ENSMUSG00000054752.17	novel	7467	13	NA	NA	25779	-1	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	5.67845911838623	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTGTCCATTTTTTAT	NA	False	NA	7	True	ATTAAA	-16	NA	53669058	53707008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_53669310_53679793_53680004_53682099_53682199_53686387_53686518_53693983_53694085_53694607_53694860_53696889_53696979_53701040
ENSMUSG00000054752.17_8	chr4	+	6851	7	ISM	ENSMUSG00000054752.17	ENSMUST00000180164.2	7340	13	36511	2	36511	-2	3prime_fragment	FALSE	canonical	3	17	junction_6	5.14511634681104	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGTGTCCATTTTTTA	NA	False	NA	6	True	ATTAAA	-15	NA	53679790	53707007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_53680004_53682099_53682199_53686387_53686518_53693983_53694085_53694607_53694860_53696889_53696979_53701040
ENSMUSG00000054752.17_9	chr4	+	4020	1	ISM	ENSMUSG00000054752.17	ENSMUST00000132151.8	7467	13	71518	1	59709	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTGTCCATTTTTTAT	NA	False	NA	7	True	ATTAAA	-16	NA	53702988	53707008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_53703000_53707000
ENSMUSG00000054753.10_0	chr7	-	3337	12	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	5	-6	combination_of_known_junctions	FALSE	canonical	3	141	junction_11	34.6786904344431	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATATGACTTTATTTT	9609	False	NA	81	True	NA	NA	NA	3218926	3204503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214125_3218840
ENSMUSG00000054753.10_1	chr7	-	3340	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	103	6	5	-6	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATATGACTTTATTTT	9609	False	NA	81	True	NA	NA	NA	3218926	3204503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
ENSMUSG00000054753.10_11	chr7	-	3108	11	ISM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	5048	6	350	-6	3prime_fragment	FALSE	canonical	3	207	junction_9	18.4282391996631	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATATGACTTTATTTT	3015	False	NA	81	True	NA	NA	NA	3213981	3204503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722
ENSMUSG00000054753.10_13	chr7	-	3159	11	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	27	-6	combination_of_known_splicesites	FALSE	canonical	3	13	junction_9	78.1811358321175	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATATGACTTTATTTT	9631	False	NA	81	True	NA	NA	NA	3218904	3204503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3213722_3214128_3218840
ENSMUSG00000054753.10_17	chr7	-	3183	11	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	0	-6	combination_of_known_splicesites	FALSE	canonical	3	13	junction_9	75.555343953952	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATATGACTTTATTTT	9604	False	NA	81	True	NA	NA	NA	3218931	3204503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3213722_3214125_3218840
ENSMUSG00000054753.10_2	chr7	-	2309	7	ISM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	10005	6	5307	-6	3prime_fragment	FALSE	canonical	3	233	junction_5	12.1928941054479	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATATGACTTTATTTT	7972	False	NA	81	True	NA	NA	NA	3209024	3204503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891
ENSMUSG00000054753.10_21	chr7	-	2466	8	ISM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	9694	6	4996	-6	3prime_fragment	FALSE	canonical	3	233	junction_5	12.0441365190617	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATATGACTTTATTTT	7661	False	NA	81	True	NA	NA	NA	3209335	3204503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268
ENSMUSG00000054753.10_8	chr7	-	1034	1	ISM	ENSMUSG00000054753.10	ENSMUST00000205185.2	3361	10	8794	6	8794	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATATGACTTTATTTT	7093	False	NA	81	True	NA	NA	NA	3205537	3204503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_3204500_3205500
ENSMUSG00000054763.10_0	chr14	+	618	3	FSM	ENSMUSG00000054763.10	ENSMUST00000067990.8	618	3	-21	21	-21	14	multi-exon	FALSE	canonical	3	33	junction_1	3	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTTGTCTTAAATCATAA	NA	False	NA	7	True	AATAAA	-16	NA	63284418	63286038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_63284500_63284892_63285068_63285676
ENSMUSG00000054763.10_2	chr14	+	534	4	NIC	ENSMUSG00000054763.10	novel	618	3	NA	NA	-34	7	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	14.3527000944073	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTCTTCCTTGTCTTAA	NA	False	NA	0	True	AATAAA	-9	NA	63284405	63286031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_63284500_63284892_63285068_63285676_63285752_63285841
ENSMUSG00000054766.14_0	chr2	+	2558	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	248	18	248	-18	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	12542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGATTTTTTTTGGACT	NA	False	NA	1	True	AATAAA	-6	NA	29952112	29962571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ENSMUSG00000054766.14_105	chr2	+	2801	8	FSM	ENSMUSG00000054766.14	ENSMUST00000067996.7	2834	8	12	21	12	-21	multi-exon	FALSE	canonical	3	3891	junction_1	4471.27957761808	5186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATAAAGATTTTTTTTGG	NA	False	NA	-2	True	AATAAA	-3	NA	29956479	29962568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29956906_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ENSMUSG00000054770.17_1	chr1	-	3038	7	NIC	ENSMUSG00000054770.17	novel	2495	7	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	25.1859749331515	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGACTTTTCTGTG	NA	False	NA	-9	True	AATAAA	-15	NA	58009209	57994416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655_58006883_58008565
ENSMUSG00000054770.17_13	chr1	-	1820	4	FSM	ENSMUSG00000054770.17	ENSMUST00000160614.9	707	4	319	-1432	-147	-7	multi-exon	FALSE	canonical	3	56	junction_3	11.5758369027902	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAATGTGACTTTTCTG	NA	False	NA	-11	True	AATAAA	-13	NA	58002287	57994418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226
ENSMUSG00000054770.17_25	chr1	-	3013	7	FSM	ENSMUSG00000054770.17	ENSMUST00000161608.8	2495	7	-523	5	1	-5	multi-exon	FALSE	canonical	0	0	junction_6	29.1228241914978	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGACTTTTCTGTG	NA	False	NA	-9	True	AATAAA	-15	NA	58009206	57994416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004509_58004700_58006655_58006883_58008565
ENSMUSG00000054770.17_3	chr1	-	1163	1	ISM	ENSMUSG00000054770.17	ENSMUST00000164963.8	2114	4	13664	157	5682	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGACTTTTCTGTG	NA	False	NA	-9	True	AATAAA	-15	NA	57995579	57994416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_57994400_57995600
ENSMUSG00000054770.17_5	chr1	-	2428	7	FSM	ENSMUSG00000054770.17	ENSMUST00000114410.10	2512	7	72	12	-4	-7	multi-exon	FALSE	canonical	3	34	junction_6	14.3372087784044	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAATGTGACTTTTCTG	NA	False	NA	-11	True	AATAAA	-13	NA	58009215	57994418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655_58006883_58009179
ENSMUSG00000054770.17_6	chr1	-	3078	2	ISM	ENSMUSG00000054770.17	ENSMUST00000163006.2	406	3	1445	-1462	1445	-5	3prime_fragment	FALSE	canonical	3	62	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGACTTTTCTGTG	NA	False	NA	-9	True	AATAAA	-15	NA	57999816	57994416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_57995980_57998301
ENSMUSG00000054770.17_8	chr1	-	2402	7	NIC	ENSMUSG00000054770.17	novel	2512	7	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	22.3737197026631	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAATGTGACTTTTCTG	NA	False	NA	-11	True	AATAAA	-13	NA	58009211	57994418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004509_58004700_58006655_58006883_58009179
ENSMUSG00000054770.17_9	chr1	-	4488	6	NIC	ENSMUSG00000054770.17	novel	2512	7	NA	NA	1	-5	intron_retention	FALSE	canonical	3	34	junction_5	15.6511980372111	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGACTTTTCTGTG	NA	False	NA	-9	True	AATAAA	-15	NA	58009206	57994416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58004700_58006655_58006883_58009179
ENSMUSG00000054792.16_0	chr9	-	1039	1	ISM	ENSMUSG00000054792.16	ENSMUST00000068025.13	4530	10	49726	4	5577	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTCTTGCAGTTTCCTG	NA	False	NA	-6	True	AATAAA	-13	NA	110256036	110254997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_110255000_110256000
ENSMUSG00000054792.16_1	chr9	-	4447	10	FSM	ENSMUSG00000054792.16	ENSMUST00000068025.13	4530	10	79	4	-25	-2	multi-exon	FALSE	canonical	1	6	junction_9	1.68508343201146	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTCTTGCAGTTTCCTG	2037	False	NA	-6	True	AATAAA	-13	NA	110305683	110254997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_110258086_110259013_110259126_110261501_110261607_110265078_110265302_110266414_110266552_110267965_110268127_110275741_110275941_110279787_110279929_110284424_110284556_110305533
ENSMUSG00000054792.16_2	chr9	-	4514	10	FSM	ENSMUSG00000054792.16	ENSMUST00000198164.5	4538	10	21	3	21	-3	multi-exon	FALSE	canonical	1	3	junction_4	2.46956786343254	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATATTCTTGCAGTTTCCT	1984	False	NA	-7	True	AATAAA	-12	NA	110305736	110254998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_110258086_110259013_110259126_110261501_110261607_110265078_110265317_110266414_110266552_110267965_110268127_110275741_110275941_110279787_110279929_110284424_110284556_110305533
ENSMUSG00000054793.9_0	chr7	+	2133	9	FSM	ENSMUSG00000054793.9	ENSMUST00000068023.8	2161	9	22	6	22	-6	multi-exon	FALSE	canonical	3	44	junction_8	7.9912061042123	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTATGGGGTGGCTGT	6423	False	NA	NA	False	ATTAAA	-11	NA	24181469	24203958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24181588_24198580_24198728_24198937_24199091_24199348_24199484_24199900_24200066_24200156_24200248_24200989_24201163_24202090_24202220_24202936
ENSMUSG00000054793.9_2	chr7	+	1976	8	ISM	ENSMUSG00000054793.9	ENSMUST00000068023.8	2161	9	17172	6	-766	-6	3prime_fragment	FALSE	canonical	3	44	junction_7	8.2065180664829	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTATGGGGTGGCTGT	NA	False	NA	NA	False	ATTAAA	-11	NA	24198619	24203958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24198728_24198937_24199091_24199348_24199484_24199900_24200066_24200156_24200248_24200989_24201163_24202090_24202220_24202936
ENSMUSG00000054793.9_3	chr7	+	1794	7	ISM	ENSMUSG00000054793.9	ENSMUST00000068023.8	2161	9	17557	13	-381	-13	3prime_fragment	FALSE	canonical	3	44	junction_6	8.18535277187245	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAGAGAACAAGTATGGGG	NA	False	NA	NA	False	ATTAAA	-4	NA	24199004	24203951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24199091_24199348_24199484_24199900_24200066_24200156_24200248_24200989_24201163_24202090_24202220_24202936
ENSMUSG00000054793.9_6	chr7	+	447	1	ISM	ENSMUSG00000054793.9	ENSMUST00000068023.8	2161	9	22060	10	4122	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAACAAGTATGGGGTGG	NA	False	NA	NA	False	ATTAAA	-7	NA	24203507	24203954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24203500_24204000
ENSMUSG00000054808.16_2	chr7	-	3818	21	FSM	ENSMUSG00000054808.16	ENSMUST00000068045.14	3877	21	51	8	51	-8	multi-exon	FALSE	canonical	3	997	junction_13	138.805763569097	2286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGGACTCTGGTGTCAT	NA	False	NA	-9	True	AATAAA	-16	NA	28661714	28592680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
ENSMUSG00000054808.16_3	chr7	-	3819	21	NIC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	50	-8	combination_of_known_junctions	FALSE	canonical	3	395	junction_14	307.041247229098	955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGGACTCTGGTGTCAT	NA	False	NA	-9	True	AATAAA	-16	NA	28661715	28592680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28609327_28609414_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
ENSMUSG00000054814.15_0	chr5	-	3211	9	FSM	ENSMUSG00000054814.15	ENSMUST00000068058.14	4557	9	28	1318	17	-1318	multi-exon	FALSE	canonical	3	162	junction_8	42.7755771439732	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTCTTGCAGCTAAT	NA	False	NA	-7	True	ATTAAA	-11	NA	74229064	74160704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
ENSMUSG00000054814.15_2	chr5	-	3127	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	32	-1318	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTCTTGCAGCTAAT	NA	False	NA	-7	True	ATTAAA	-11	NA	74226377	74160704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
ENSMUSG00000054814.15_3	chr5	-	2653	1	ISM	ENSMUSG00000054814.15	ENSMUST00000119154.8	4738	8	67035	280	27983	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTAATTTATTTTTGGCT	NA	False	NA	NA	False	ATTAAA	-19	NA	74162046	74159393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_74159400_74162000
ENSMUSG00000054823.18_1	chr8	+	3753	7	NIC	ENSMUSG00000054823.18	novel	3818	8	NA	NA	-28	-21	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	37.7657252015634	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAGCTTAGAACA	9657	False	NA	NA	False	AATAAA	-5	NA	26092271	26164911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_26092753_26130592_26131342_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349
ENSMUSG00000054823.18_3	chr8	+	2482	6	FSM	ENSMUSG00000054823.18	ENSMUST00000143445.2	2416	6	-66	0	-31	0	multi-exon	FALSE	canonical	3	91	junction_5	11.4960862905599	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTGTGCCTGCTGATT	9654	False	NA	NA	False	ATTAAA	-13	NA	26092268	26153615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756
ENSMUSG00000054823.18_34	chr8	+	3313	1	ISM	ENSMUSG00000054823.18	ENSMUST00000142395.8	10105	24	114076	6	16390	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAGAATATGGGCTGGT	NA	False	NA	13	True	AATAAA	-17	NA	26206375	26209688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_26206400_26209700
ENSMUSG00000054823.18_4	chr8	+	3828	8	FSM	ENSMUSG00000054823.18	ENSMUST00000136107.9	3818	8	-27	17	-27	-17	multi-exon	FALSE	canonical	3	91	junction_5	11.0435131943358	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAGCTTAGAACAATCC	9658	False	NA	NA	False	AATAAA	-9	NA	26092272	26164915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349
ENSMUSG00000054823.18_5	chr8	+	2931	10	FSM	ENSMUSG00000054823.18	ENSMUST00000146919.8	3652	10	-32	753	-32	5	multi-exon	FALSE	canonical	3	19	junction_9	30.118285328204	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGCCGTTGTCATGGAGA	9653	False	NA	NA	False	ATTAAA	-25	NA	26092267	26167235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349_26163451_26165712_26165759_26166718
ENSMUSG00000054823.18_6	chr8	+	5162	24	FSM	ENSMUSG00000054823.18	ENSMUST00000142395.8	10105	24	-34	4977	-34	-2	multi-exon	FALSE	canonical	3	27	junction_15	30.6634885068579	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACGATCAGTGTAAAGCCT	9651	False	NA	NA	False	ATTAAA	-15	NA	26092265	26204717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349_26163451_26165712_26165759_26168731_26168863_26169881_26170011_26170663_26170791_26172514_26172713_26173167_26173339_26181041_26181189_26184715_26184873_26188760_26188964_26189938_26190052_26190478_26190749_26196551_26196669_26199089_26199232_26200699_26200807_26203384_26203587_26204185
ENSMUSG00000054823.18_8	chr8	+	5009	23	FSM	ENSMUSG00000054823.18	ENSMUST00000139966.8	5261	23	-26	278	-26	0	multi-exon	FALSE	canonical	2	6	junction_14	32.1331488683936	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGATCAGTGTAAAGCCTAA	9659	False	NA	NA	False	ATTAAA	-17	NA	26092273	26204719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349_26163451_26165712_26165759_26168731_26168863_26169881_26170011_26170663_26170791_26172514_26172713_26173167_26173339_26184715_26184873_26188760_26188964_26189938_26190052_26190478_26190749_26196551_26196669_26199089_26199232_26200699_26200807_26203384_26203587_26204185
ENSMUSG00000054836.13_0	chr9	+	1272	7	FSM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	32	0	1	0	multi-exon	FALSE	canonical	3	125	junction_6	18.4157239577729	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTGGAGGTTGTCTTT	2214	False	NA	7	True	AATAAA	-17	NA	110134272	110150391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_110134418_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
ENSMUSG00000054836.13_1	chr9	+	1361	8	NNC	ENSMUSG00000054836.13	novel	2219	8	NA	NA	-8	2	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	63.5539301760035	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGAGGTTGTCTTTTT	2205	False	NA	9	True	AATAAA	-19	NA	110134263	110150393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_110134418_110137258_110137337_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
ENSMUSG00000054836.13_11	chr9	+	810	3	ISM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	10624	2	6150	-2	3prime_fragment	FALSE	canonical	3	125	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTTCCTGGAGGTTGTCT	NA	False	NA	5	True	AATAAA	-15	NA	110144864	110150389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110145021_110148637_110148785_110149882
ENSMUSG00000054836.13_12	chr9	+	738	2	ISM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	14314	1	9840	-1	3prime_fragment	FALSE	canonical	3	125	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTCCTGGAGGTTGTCTT	NA	False	NA	6	True	AATAAA	-16	NA	110148554	110150390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_110148785_110149882
ENSMUSG00000054836.13_13	chr9	+	2381	1	NIC	ENSMUSG00000054836.13	novel	2219	8	NA	NA	10056	-19	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAACTAAAAATTTTAT	NA	False	NA	-13	True	AATGAA	-7	NA	110148770	110151151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_110148800_110151200
ENSMUSG00000054843.10_0	chr19	+	2916	6	NNC	ENSMUSG00000054843.10	novel	6586	29	NA	NA	-16	-488483	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_5	10.1469207151727	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTATGTTCACGTGTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	57599449	57633292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_57600076_57617516_57617601_57618657_57618772_57626883_57627013_57630851_57631061_57631538
ENSMUSG00000054843.10_12	chr19	+	2117	1	ISM	ENSMUSG00000054843.10	ENSMUST00000077282.7	6586	29	520188	5	520188	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACCACCTCGTTCTCTG	NA	False	NA	13	True	AATAAA	-28	NA	58119653	58121770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_58119700_58121800
ENSMUSG00000054843.10_2	chr19	+	6559	29	FSM	ENSMUSG00000054843.10	ENSMUST00000077282.7	6586	29	18	9	18	-9	multi-exon	FALSE	canonical	0	0	junction_26	9.87905173917548	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAAAACCACCTCGTTC	NA	False	NA	9	True	AATAAA	-24	NA	57599483	58121766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_57600076_57617516_57617601_57618657_57618772_57626883_57627013_57630851_57631061_57638689_57638865_57641354_57641443_57643202_57643459_57645486_57645671_57661550_57661706_57670802_57670888_57673935_57674145_57675090_57675210_57680198_57680332_57684605_57684788_57687948_57688163_57690419_57690609_57695346_57695566_57703017_57703156_57719983_57720078_57728611_57728665_57740061_57740157_57741656_57741736_57743892_57744051_57766315_57766378_57785856_57785936_57924028_57924137_58030759_58030875_58119524
ENSMUSG00000054843.10_3	chr19	+	1826	8	ISM	ENSMUSG00000054843.10	ENSMUST00000077282.7	6586	29	-5	478161	-5	-478161	5prime_fragment	FALSE	canonical	3	13	junction_6	8.8132553229641	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTTGTCCTTGAATAC	NA	False	NA	NA	False	AATATA	-18	NA	57599460	57643614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_57600076_57617516_57617601_57618657_57618772_57626883_57627013_57630851_57631061_57638689_57638865_57641354_57641443_57643202
ENSMUSG00000054843.10_8	chr19	+	1490	6	ISM	ENSMUSG00000054843.10	ENSMUST00000077282.7	6586	29	-3	482745	-3	-482745	5prime_fragment	FALSE	canonical	3	21	junction_5	5.2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCCGTTTAGAGTGATT	NA	False	NA	NA	False	TATAAA	-7	NA	57599462	57639030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_57600076_57617516_57617601_57618657_57618772_57626883_57627013_57630851_57631061_57638689
ENSMUSG00000054850.5_0	chrX	+	2404	2	FSM	ENSMUSG00000054850.5	ENSMUST00000068106.5	2393	2	-13	2	-13	-2	multi-exon	FALSE	canonical	3	59	junction_1	0	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACATCCTGGCTGCCTCC	NA	False	NA	12	True	AAGAAA	-13	NA	55419932	55423157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_55420569_55421389
ENSMUSG00000054850.5_8	chrX	+	1274	1	ISM	ENSMUSG00000054850.5	ENSMUST00000068106.5	2393	2	1937	3	1937	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACACATCCTGGCTGCCTC	NA	False	NA	11	True	AAGAAA	-12	NA	55421882	55423156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_55421900_55423200
ENSMUSG00000054855.14_1	chr15	-	1622	5	FSM	ENSMUSG00000054855.14	ENSMUST00000003451.11	2203	5	5	576	2	-576	multi-exon	FALSE	canonical	3	35	junction_3	4.54835134966506	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAATTGGTGGGGTTTTG	NA	False	NA	NA	False	AATATA	-8	NA	98575337	98567661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98568724_98570391_98570527_98571726_98571837_98574367_98574456_98575110
ENSMUSG00000054863.10_0	chr15	+	1631	4	FSM	ENSMUSG00000054863.10	ENSMUST00000230414.2	2649	4	-79	1097	-79	-1097	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGCCTAAAGTTATATAT	NA	False	NA	1	True	ATTAAA	-11	NA	87428420	87642466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_87428805_87565680_87565831_87604702_87604831_87641497
ENSMUSG00000054863.10_2	chr15	+	1484	4	FSM	ENSMUSG00000054863.10	ENSMUST00000068088.8	2603	4	20	1099	20	-1097	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGCCTAAAGTTATATAT	NA	False	NA	1	True	ATTAAA	-11	NA	87509450	87642466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_87509688_87565680_87565831_87604702_87604831_87641497
ENSMUSG00000054871.6_0	chr9	-	1747	1	FSM	ENSMUSG00000054871.6	ENSMUST00000068140.6	1712	1	-40	5	-40	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATGTGTATGTTTCCTT	NA	False	NA	-2	True	AATACA	-14	NA	123089869	123088122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_123088100_123089900
ENSMUSG00000054874.13_15	chr19	-	6986	35	NIC	ENSMUSG00000054874.13	novel	7264	35	NA	NA	33	1	combination_of_known_junctions	FALSE	canonical	1	10	junction_25	25.0202686002858	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGGCAGTTTTATTTTC	NA	False	NA	-4	True	NA	NA	NA	5738690	5714664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5715276_5715356_5715656_5715735_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731582_5733334_5733441_5733815_5733907_5734317_5734497_5734576_5734701_5735119_5736248_5736458_5736555_5736654_5736695_5737146_5737247_5737478_5737667_5738024
ENSMUSG00000054874.13_18	chr19	-	7031	35	FSM	ENSMUSG00000054874.13	ENSMUST00000113615.9	7264	35	227	6	14	-1	multi-exon	FALSE	canonical	3	44	junction_25	21.6322679648029	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGTTGGCAGTTTTAT	NA	False	NA	-8	True	NA	NA	NA	5738709	5714668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5715276_5715356_5715656_5715735_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731582_5733304_5733441_5733815_5733907_5734317_5734497_5734576_5734701_5735119_5736248_5736458_5736555_5736654_5736695_5737146_5737247_5737478_5737667_5738024
ENSMUSG00000054874.13_2	chr19	-	7074	35	NIC	ENSMUSG00000054874.13	novel	7264	35	NA	NA	14	1	combination_of_known_junctions	FALSE	canonical	3	30	junction_25	22.9138600567203	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGGCAGTTTTATTTTC	NA	False	NA	-4	True	NA	NA	NA	5738709	5714664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5715276_5715356_5715656_5715735_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731621_5733304_5733441_5733815_5733907_5734317_5734497_5734576_5734701_5735119_5736248_5736458_5736555_5736654_5736695_5737146_5737247_5737478_5737667_5738024
ENSMUSG00000054874.13_23	chr19	-	5370	30	ISM	ENSMUSG00000054874.13	ENSMUST00000113615.9	7264	35	3246	1	-993	-1	3prime_fragment	TRUE	canonical	3	44	junction_25	20.6292797238846	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGCAGTTTTATTTTCT	NA	False	NA	-3	True	NA	NA	NA	5735690	5714663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5715276_5715356_5715656_5715735_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731582_5733304_5733441_5733815_5733907_5734317_5734497_5734576_5734701_5735119
ENSMUSG00000054874.13_5	chr19	-	7036	35	NNC	ENSMUSG00000054874.13	novel	7264	35	NA	NA	11	-1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_28	24.0650071156035	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGCAGTTTTATTTTCT	NA	False	NA	-3	True	NA	NA	NA	5738712	5714663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_5715276_5715356_5715656_5715735_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731582_5733304_5733441_5733815_5733907_5734317_5734494_5734576_5734701_5735119_5736248_5736458_5736555_5736654_5736695_5737146_5737247_5737478_5737667_5738024
ENSMUSG00000054889.11_0	chr13	+	9598	24	FSM	ENSMUSG00000054889.11	ENSMUST00000124830.3	9592	24	-9	3	-9	-3	multi-exon	FALSE	canonical	2	11	junction_1	5.11863048791702	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTTGTGTTTTGATT	6487	False	NA	32	True	AATAAA	-14	NA	38335260	38382550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_38335771_38348739_38348843_38351491_38351641_38352581_38352757_38356754_38356884_38357793_38357845_38359043_38359206_38360371_38360477_38361162_38361259_38362409_38362536_38363023_38363177_38365073_38365229_38366177_38366305_38367090_38367293_38367921_38368149_38369071_38369239_38369548_38369688_38370570_38370765_38371716_38371880_38372425_38372510_38373521_38373630_38374370_38374470_38375336_38377632_38378671
ENSMUSG00000054889.11_6	chr13	+	4949	2	ISM	ENSMUSG00000054889.11	ENSMUST00000124830.3	9592	24	41293	2	14220	-2	3prime_fragment	FALSE	canonical	3	32	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTTGTGTTTTGATTT	NA	False	NA	33	True	AATAAA	-15	NA	38376562	38382551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_38377632_38378671
ENSMUSG00000054889.11_7	chr13	+	3975	2	ISM	ENSMUSG00000054889.11	ENSMUST00000127906.8	7761	24	40436	2	13397	-2	3prime_fragment	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTTGTGTTTTGATTT	NA	False	NA	33	True	AATAAA	-15	NA	38375739	38382551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_38375835_38378671
ENSMUSG00000054889.11_8	chr13	+	2860	1	ISM	ENSMUSG00000054889.11	ENSMUST00000124830.3	9592	24	44421	3	17348	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTTGTGTTTTGATT	NA	False	NA	32	True	AATAAA	-14	NA	38379690	38382550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_38379700_38382600
ENSMUSG00000054893.16_0	chr7	+	3434	5	FSM	ENSMUSG00000054893.16	ENSMUST00000086327.12	3672	5	23	215	9	-14	multi-exon	FALSE	canonical	3	26	junction_1	11.1214882097676	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTATATACAAAGAGGTT	2995	False	NA	NA	False	AATAAA	-23	NA	6289600	6310667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6289654_6292356_6292437_6293534_6293662_6296847_6296941_6307586
ENSMUSG00000054893.16_2	chr7	+	3547	6	NNC	ENSMUSG00000054893.16	novel	3498	5	NA	NA	9	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	20.0957706993288	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATTAGATTATATACAAAG	2995	False	NA	NA	False	AATAAA	-18	NA	6289600	6310662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_6289654_6290851_6290970_6292356_6292437_6293534_6293662_6296847_6296941_6307586
ENSMUSG00000054893.16_3	chr7	+	3535	6	NNC	ENSMUSG00000054893.16	novel	3498	5	NA	NA	9	-14	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	18.2822318112423	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTATATACAAAGAGGTT	2995	False	NA	NA	False	AATAAA	-23	NA	6289600	6310667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_6289654_6290868_6290970_6292356_6292437_6293534_6293662_6296847_6296941_6307586
ENSMUSG00000054893.16_4	chr7	+	4729	5	FSM	ENSMUSG00000054893.16	ENSMUST00000108562.2	3498	5	-1266	35	9	-35	multi-exon	FALSE	canonical	3	18	junction_1	14.0245320777557	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTTCTTTTGTGTGAT	2995	False	NA	NA	False	AATAAA	-2	NA	6289600	6310646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6290970_6292356_6292437_6293534_6293662_6296847_6296941_6307586
ENSMUSG00000054893.16_5	chr7	+	2735	1	ISM	ENSMUSG00000054893.16	ENSMUST00000086327.12	3672	5	18352	218	14397	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAGATTATATACAAAGAG	NA	False	NA	NA	False	AATAAA	-20	NA	6307929	6310664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_6307900_6310700
ENSMUSG00000054893.16_9	chr7	+	3380	4	ISM	ENSMUSG00000054893.16	ENSMUST00000108562.2	3498	5	1488	17	-1178	-17	3prime_fragment	FALSE	canonical	3	36	junction_3	7.84573486395988	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAGATTATATACAAAGAG	5749	False	NA	NA	False	AATAAA	-20	NA	6292354	6310664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_6292437_6293534_6293662_6296847_6296941_6307586
ENSMUSG00000054894.7_0	chr12	+	1468	5	FSM	ENSMUSG00000054894.7	ENSMUST00000021372.6	1485	5	11	6	5	-6	multi-exon	FALSE	canonical	3	102	junction_1	45.2513811943901	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGTAAGTGAAGGCTAGT	NA	False	NA	-4	True	AATAAA	-8	NA	69771746	69791426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_69771789_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054894.7_1	chr12	+	1571	6	FSM	ENSMUSG00000054894.7	ENSMUST00000220916.2	1599	6	25	3	7	-1	multi-exon	FALSE	canonical	3	32	junction_1	68.5787138987018	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGAAGGCTAGTCTTTA	NA	False	NA	1	True	AATAAA	-13	NA	69771748	69791431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_69771789_69772228_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054894.7_14	chr12	+	1428	4	ISM	ENSMUSG00000054894.7	ENSMUST00000021372.6	1485	5	12989	4	12961	-4	3prime_fragment	FALSE	canonical	3	176	junction_3	21.7715410570772	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAAGTGAAGGCTAGTCT	NA	False	NA	-2	True	AATAAA	-10	NA	69784724	69791428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054894.7_15	chr12	+	1241	3	ISM	ENSMUSG00000054894.7	ENSMUST00000021372.6	1485	5	16005	12	15977	-12	3prime_fragment	FALSE	canonical	3	176	junction_2	25.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCCATAAGTAAGTGAAG	NA	False	NA	-10	True	AATAAA	-2	NA	69787740	69791420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_69787882_69788418_69788591_69790492
ENSMUSG00000054894.7_2	chr12	+	2012	5	NIC	ENSMUSG00000054894.7	novel	1485	5	NA	NA	7	0	intron_retention	FALSE	canonical	3	110	junction_1	42.1270400099509	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAGGCTAGTCTTTAC	NA	False	NA	2	True	AATAAA	-14	NA	69771748	69791432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054894.7_3	chr12	+	1357	4	NIC	ENSMUSG00000054894.7	novel	1485	5	NA	NA	7	-4	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	90.3487071788462	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAAGTGAAGGCTAGTCT	NA	False	NA	-2	True	AATAAA	-10	NA	69771748	69791428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_69771789_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054901.8_2	chr17	+	2219	1	FSM	ENSMUSG00000054901.8	ENSMUST00000224002.2	491	1	-669	-1059	-669	1059	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCATGTGAAATTTTTGA	NA	False	NA	NA	False	CATAAA	-21	NA	80680416	80682635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_80680400_80682600
ENSMUSG00000054901.8_3	chr17	+	3432	10	ISM	ENSMUSG00000054901.8	ENSMUST00000223878.2	3253	18	42095	13380	1962	1161	internal_fragment	FALSE	canonical	1	1	junction_8	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCTGGACATACCTCTA	NA	False	NA	NA	False	AATAAA	-14	NA	80656930	80682737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_80657016_80660108_80660169_80662407_80662633_80667750_80667881_80672697_80672831_80674681_80674766_80675613_80675698_80677699_80677849_80678699_80678865_80680420
ENSMUSG00000054920.13_1	chr5	+	3095	11	FSM	ENSMUSG00000054920.13	ENSMUST00000204097.3	3149	11	21	33	21	-33	multi-exon	FALSE	canonical	3	37	junction_10	19.4393929946385	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGATACAAACTAAAGTCCC	NA	False	NA	99	True	TATAAA	-3	NA	65264902	65325416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_65265205_65298602_65298786_65300581_65300719_65301901_65302099_65305931_65306145_65313397_65313585_65316126_65316352_65318384_65318548_65320132_65320346_65321873_65322046_65324313
ENSMUSG00000054920.13_2	chr5	+	1202	6	NNC	ENSMUSG00000054920.13	novel	3149	11	NA	NA	23	-3945	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	25.9121593079388	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTTAAAGAGGGCACTTA	NA	False	NA	21	True	AATAAA	-18	NA	65264904	65307052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_65265205_65298602_65298786_65300581_65300719_65301901_65302099_65305931_65306145_65306880
ENSMUSG00000054920.13_8	chr5	+	2402	6	ISM	ENSMUSG00000054920.13	ENSMUST00000204097.3	3149	11	71	10632	71	3820	5prime_fragment	FALSE	canonical	3	58	junction_5	13.0843417870369	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAGCTAGTGTTTAGAA	NA	False	NA	NA	False	AGTAAA	-11	NA	65264952	65314817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_65265205_65298602_65298786_65300581_65300719_65301901_65302099_65305931_65306145_65313397
ENSMUSG00000054934.11_0	chr10	-	1763	2	FSM	ENSMUSG00000054934.11	ENSMUST00000087965.5	1626	2	-131	-6	-118	6	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTAGTGATAGTTGCCTC	NA	False	NA	NA	False	NA	NA	NA	116309458	116298544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_116299940_116309090
ENSMUSG00000054939.7_0	chr16	+	5885	3	FSM	ENSMUSG00000054939.7	ENSMUST00000041778.8	5897	3	-23	35	-23	-35	multi-exon	FALSE	canonical	2	5	junction_1	1	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGAAATAAAGATGGTATT	NA	False	NA	NA	False	AATAAA	-10	NA	3665108	3676709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_3666139_3667214_3667435_3672074
ENSMUSG00000054939.7_1	chr16	+	1916	2	ISM	ENSMUSG00000054939.7	ENSMUST00000041778.8	5897	3	-44	8665	-44	-8665	5prime_fragment	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGCTCTGTGGGTAAAG	NA	False	NA	NA	False	NA	NA	NA	3665087	3668079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_3666139_3667214
ENSMUSG00000054939.7_2	chr16	+	949	1	ISM	ENSMUSG00000054939.7	ENSMUST00000041778.8	5897	3	10632	32	10632	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAAGATGGTATTGAT	NA	False	NA	NA	False	AATAAA	-13	NA	3675763	3676712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_3675800_3676700
ENSMUSG00000054942.14_1	chr3	-	4944	16	FSM	ENSMUSG00000054942.14	ENSMUST00000073089.13	4965	16	25	-4	1	4	multi-exon	TRUE	canonical	3	131	junction_7	24.7194030852059	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCTTAATGACTGTCA	NA	False	NA	-30	True	AATAAA	-17	NA	152046019	151979481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_151982491_151984529_151984647_151989418_151989473_151990838_151990974_151993141_151993241_151994692_151994780_151996096_151996170_151996427_151996547_152002753_152002855_152023250_152023375_152026246_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
ENSMUSG00000054942.14_16	chr3	-	4825	15	NIC	ENSMUSG00000054942.14	novel	4965	16	NA	NA	-2	-2	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	48.8133157644343	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCTTTGTTCTTAATGA	NA	False	NA	-36	True	AATAAA	-11	NA	152046023	151979487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_151982491_151989418_151989473_151990838_151990974_151993141_151993241_151994692_151994780_151996096_151996170_151996427_151996547_152002753_152002855_152023250_152023375_152026246_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
ENSMUSG00000054942.14_23	chr3	-	4736	15	ISM	ENSMUSG00000054942.14	ENSMUST00000073089.13	4965	16	2436	0	-37	0	3prime_fragment	FALSE	canonical	3	131	junction_7	24.7737723392778	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTTGTTCTTAATGACT	NA	False	NA	-34	True	AATAAA	-13	NA	152043608	151979485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_151982491_151984529_151984647_151989418_151989473_151990838_151990974_151993141_151993241_151994692_151994780_151996096_151996170_151996427_151996547_152002753_152002855_152023250_152023375_152026246_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362
ENSMUSG00000054942.14_39	chr3	-	1687	6	ISM	ENSMUSG00000054942.14	ENSMUST00000199334.5	4024	14	-5	38378	-4	11440	5prime_fragment	FALSE	canonical	3	188	junction_4	9.69535971483266	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCAAAGTCTCTTAAC	NA	False	NA	-7	True	NA	NA	NA	152046025	152025591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
ENSMUSG00000054942.14_7	chr3	-	2073	1	Genic_Genomic	ENSMUSG00000054942.14	novel	NA	NA	NA	NA	9634	4	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCTTAATGACTGTCA	NA	False	NA	-30	True	AATAAA	-17	NA	151981554	151979481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_-_151979500_151981600
ENSMUSG00000054945.5_0	chr5	+	1865	1	FSM	ENSMUSG00000054945.5	ENSMUST00000238484.2	1869	1	1	3	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTGATTGTGTCCAGGT	5664	False	NA	NA	False	AATAAA	-18	NA	90514479	90516344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_90514500_90516300
ENSMUSG00000054967.8_0	chr15	-	2190	5	FSM	ENSMUSG00000054967.8	ENSMUST00000229055.2	2212	5	20	2	-16	-2	multi-exon	FALSE	canonical	3	11	junction_4	6.04152298679729	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGATGGCTCTGAGTTT	8505	False	NA	NA	False	ATTAAA	-22	NA	76809628	76794572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76796376_76801489_76801604_76801834_76801962_76802168_76802262_76809575
ENSMUSG00000054967.8_9	chr15	-	362	1	ISM	ENSMUSG00000054967.8	ENSMUST00000229055.2	2212	5	14715	1	7277	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGATGGCTCTGAGTTTG	NA	False	NA	NA	False	ATTAAA	-23	NA	76794933	76794571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_76794600_76794900
ENSMUSG00000054994.3_16	chrX	+	3099	2	ISM	ENSMUSG00000054994.3	ENSMUST00000068340.3	3698	5	6485	-154	6485	154	3prime_fragment	FALSE	canonical	3	245	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134401821	134405497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_134402205_134402781
ENSMUSG00000054994.3_18	chrX	+	2109	1	Genic_Genomic	ENSMUSG00000054994.3	novel	NA	NA	NA	NA	8052	154	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134403388	134405497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_134403400_134405500
ENSMUSG00000054994.3_5	chrX	+	3822	5	FSM	ENSMUSG00000054994.3	ENSMUST00000068340.3	3698	5	30	-154	30	154	multi-exon	FALSE	canonical	3	112	junction_2	53.6516542149448	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134395366	134405497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134395469_134395666_134395786_134400016_134400317_134401619_134402205_134402781
ENSMUSG00000055013.17_0	chr1	+	4253	18	FSM	ENSMUSG00000055013.17	ENSMUST00000027521.15	11921	18	7	7661	7	-45	multi-exon	FALSE	canonical	3	334	junction_11	41.2693909545293	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAGAAGTTCATAAAT	NA	False	NA	-6	True	NA	NA	NA	89382534	89817678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_89383315_89532319_89532379_89537217_89537306_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89694027_89694187_89716884_89717047_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
ENSMUSG00000055013.17_1	chr1	+	3916	17	FSM	ENSMUSG00000055013.17	ENSMUST00000190096.7	4078	17	-69	231	-1	-231	multi-exon	FALSE	canonical	3	77	junction_11	88.5197497384058	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGAAATCATGAATTCGG	NA	False	NA	22	True	NA	NA	NA	89382526	89817492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_89383315_89532319_89532379_89537217_89537306_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89716884_89717047_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
ENSMUSG00000055013.17_2	chr1	+	4146	19	NIC	ENSMUSG00000055013.17	novel	11921	18	NA	NA	6	-231	combination_of_known_junctions	FALSE	canonical	3	33	junction_13	123.248268963378	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGAAATCATGAATTCGG	NA	False	NA	22	True	NA	NA	NA	89382533	89817492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_89383315_89532319_89532379_89537217_89537306_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89694027_89694187_89716884_89717047_89751578_89751657_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
ENSMUSG00000055013.17_27	chr1	+	3307	1	ISM	ENSMUSG00000055013.17	ENSMUST00000027521.15	11921	18	437161	2344	102804	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATACAGTGCTTCTGTG	NA	False	NA	6	True	AATAAA	-12	NA	89819688	89822995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_89819700_89823000
ENSMUSG00000055013.17_3	chr1	+	3915	17	NIC	ENSMUSG00000055013.17	novel	11921	18	NA	NA	2	-226	combination_of_known_splicesites	FALSE	canonical	3	23	junction_12	100.837256724635	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCATGAATTCGGCTGAA	NA	False	NA	27	True	NA	NA	NA	89382529	89817497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_89383315_89532319_89532379_89537217_89537306_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89694027_89694187_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
ENSMUSG00000055024.13_10	chr15	+	7222	28	ISM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	25147	14	-2771	-14	3prime_fragment	FALSE	canonical	3	47	junction_5	15.653658902539	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGACACCTGAGCTTGG	NA	False	NA	8	True	AATAAA	-8	NA	81494744	81536264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81494818_81495610_81495725_81497370_81497617_81500232_81500327_81500926_81501065_81504200_81504319_81505262_81505438_81507648_81507727_81508725_81508836_81510538_81510677_81511303_81511736_81512493_81512674_81512793_81512939_81514201_81514321_81515814_81516055_81516624_81516714_81518204_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_20	chr15	+	5712	18	ISM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	41938	8	-90	-8	3prime_fragment	FALSE	canonical	3	62	junction_1	13.7735014633373	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTGAGCTTGGTGTCAC	NA	False	NA	14	True	AATAAA	-14	NA	81511535	81536270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81511736_81512493_81512674_81512793_81512939_81514201_81514321_81515814_81516055_81516624_81516714_81518204_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_21	chr15	+	5291	16	ISM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	43235	10	1207	-10	3prime_fragment	FALSE	canonical	3	64	junction_1	12.09848475361	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTGAGCTTGGTGTC	NA	False	NA	12	True	AATAAA	-12	NA	81512832	81536268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81512939_81514201_81514321_81515814_81516055_81516624_81516714_81518204_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_23	chr15	+	4700	12	ISM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	48646	8	64	-8	3prime_fragment	FALSE	canonical	3	72	junction_4	10.0576848625013	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTGAGCTTGGTGTCAC	NA	False	NA	14	True	AATAAA	-14	NA	81518243	81536270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_25	chr15	+	4998	14	ISM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	46285	10	-2297	-10	3prime_fragment	FALSE	canonical	3	72	junction_6	9.42864827448896	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTGAGCTTGGTGTC	NA	False	NA	12	True	AATAAA	-12	NA	81515882	81536268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81516055_81516624_81516714_81518204_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_26	chr15	+	4791	13	ISM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	47062	10	-1520	-10	3prime_fragment	FALSE	canonical	3	72	junction_5	9.65516557197349	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTGAGCTTGGTGTC	NA	False	NA	12	True	AATAAA	-12	NA	81516659	81536268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81516714_81518204_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_29	chr15	+	4431	8	ISM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	54366	10	3615	-10	3prime_fragment	FALSE	canonical	3	83	junction_6	9.16292440618547	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTGAGCTTGGTGTC	112	False	NA	12	True	AATAAA	-12	NA	81523963	81536268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_3	chr15	+	9246	31	FSM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	310	10	310	-10	multi-exon	FALSE	canonical	3	47	junction_8	16.0257085126784	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTGAGCTTGGTGTC	3219	False	NA	12	True	AATAAA	-12	NA	81469907	81536268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81470924_81485108_81485747_81492397_81492575_81494555_81494818_81495610_81495725_81497370_81497617_81500232_81500327_81500926_81501065_81504200_81504319_81505262_81505438_81507648_81507727_81508725_81508836_81510538_81510677_81511303_81511736_81512493_81512674_81512793_81512939_81514201_81514321_81515814_81516055_81516624_81516714_81518204_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_30	chr15	+	4021	5	ISM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	55883	10	-3570	-10	3prime_fragment	FALSE	canonical	3	83	junction_3	9.52299847737046	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTGAGCTTGGTGTC	1629	False	NA	12	True	AATAAA	-12	NA	81525480	81536268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_31	chr15	+	3780	4	ISM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	57725	10	-1728	-10	3prime_fragment	FALSE	canonical	3	83	junction_2	10.7806410858642	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTGAGCTTGGTGTC	3471	False	NA	12	True	AATAAA	-12	NA	81527322	81536268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_32	chr15	+	3660	3	FSM	ENSMUSG00000055024.13	ENSMUST00000206431.2	850	3	71	-2881	71	-14	multi-exon	FALSE	canonical	3	83	junction_1	13	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGACACCTGAGCTTGG	5270	False	NA	8	True	AATAAA	-8	NA	81529121	81536264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_33	chr15	+	3455	2	ISM	ENSMUSG00000055024.13	ENSMUST00000206431.2	850	3	3584	-2887	3584	-8	3prime_fragment	FALSE	canonical	3	109	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTGAGCTTGGTGTCAC	8783	False	NA	14	True	AATAAA	-14	NA	81532634	81536270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81532822_81533002
ENSMUSG00000055024.13_34	chr15	+	2321	1	ISM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	64350	10	4897	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTGAGCTTGGTGTC	NA	False	NA	12	True	AATAAA	-12	NA	81533947	81536268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81533900_81536300
ENSMUSG00000055024.13_4	chr15	+	9374	30	NIC	ENSMUSG00000055024.13	novel	9566	31	NA	NA	44	-10	combination_of_known_junctions	FALSE	canonical	3	7	junction_7	19.689141849701	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTGAGCTTGGTGTC	2953	False	NA	12	True	AATAAA	-12	NA	81469641	81536268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_81470924_81485108_81485747_81492397_81492575_81494555_81494818_81495610_81495725_81497370_81497617_81500232_81500327_81504200_81504319_81505262_81505438_81507648_81507727_81508725_81508836_81510538_81510677_81511303_81511736_81512493_81512674_81512793_81512939_81514201_81514321_81515814_81516055_81516624_81516714_81518204_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055024.13_7	chr15	+	7961	30	ISM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	15780	10	-12138	-10	3prime_fragment	FALSE	canonical	3	47	junction_7	15.6512223483922	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACCTGAGCTTGGTGTC	NA	False	NA	12	True	AATAAA	-12	NA	81485377	81536268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_81485747_81492397_81492575_81494555_81494818_81495610_81495725_81497370_81497617_81500232_81500327_81500926_81501065_81504200_81504319_81505262_81505438_81507648_81507727_81508725_81508836_81510538_81510677_81511303_81511736_81512493_81512674_81512793_81512939_81514201_81514321_81515814_81516055_81516624_81516714_81518204_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
ENSMUSG00000055027.18_3	chr6	-	3086	9	ISM	ENSMUSG00000055027.18	ENSMUST00000074301.10	3361	10	22615	1	22566	-1	3prime_fragment	FALSE	canonical	0	0	junction_5	2.20439901106855	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCTGTGATTCTTTTCT	8816	False	NA	NA	False	AATAAA	-20	NA	71216650	71190924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_71192894_71193711_71193881_71196241_71196406_71197911_71198005_71202315_71202506_71212326_71212366_71214340_71214472_71215531_71215746_71216533
ENSMUSG00000055041.9_0	chr15	+	902	1	FSM	ENSMUSG00000055041.9	ENSMUST00000230815.2	1331	1	431	-2	431	2	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAAACATGTTATTCTA	NA	False	NA	NA	False	ATTAAA	-15	NA	76784595	76785497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76784600_76785500
ENSMUSG00000055041.9_1	chr15	+	1012	2	FSM	ENSMUSG00000055041.9	ENSMUST00000109793.3	920	2	14	-106	14	2	multi-exon	FALSE	canonical	3	59	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAAACATGTTATTCTA	NA	False	NA	NA	False	ATTAAA	-15	NA	76784149	76785497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76784216_76784551
ENSMUSG00000055041.9_2	chr15	+	1009	2	FSM	ENSMUSG00000055041.9	ENSMUST00000068407.6	1037	2	23	5	-3	-5	multi-exon	TRUE	canonical	3	114	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACATGTTATTCTATTA	NA	False	NA	NA	False	ATTAAA	-18	NA	76784132	76785500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76784193_76784551
ENSMUSG00000055044.13_0	chr19	-	1410	7	FSM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	88	1073	88	117	multi-exon	FALSE	canonical	3	193	junction_3	18.3938395484285	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAATGTGTGACCTCTT	NA	False	NA	-25	True	AATAAA	-11	NA	40259972	40210689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_40211216_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240353_40240506_40259789
ENSMUSG00000055053.19_0	chr10	-	2936	1	ISM	ENSMUSG00000055053.19	ENSMUST00000105321.10	6237	9	27997	69	1364	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-5	NA	81235024	81232088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_81232100_81235000
ENSMUSG00000055053.19_1	chr10	-	3514	10	FSM	ENSMUSG00000055053.19	ENSMUST00000020461.15	3348	10	1	-167	1	167	multi-exon	FALSE	canonical	3	18	junction_9	5.66557723732532	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCCAAAAGGGTGGTAT	3913	False	NA	-11	True	AATAAA	-5	NA	81263006	81234804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
ENSMUSG00000055053.19_12	chr10	-	3426	9	FSM	ENSMUSG00000055053.19	ENSMUST00000105321.10	6237	9	15	2796	1	156	multi-exon	FALSE	canonical	2	12	junction_1	7.0611171212493	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAATAAAATCCAA	3913	False	NA	-22	True	NA	NA	NA	81263006	81234815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81236906_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
ENSMUSG00000055053.19_5	chr10	-	5260	5	ISM	ENSMUSG00000055053.19	ENSMUST00000020461.15	3348	10	19540	-2859	8	-93	3prime_fragment	FALSE	canonical	3	21	junction_3	6.13901457890434	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCATAAAAGATTCAATAAA	NA	False	NA	NA	False	AAAACA	-10	NA	81243467	81232112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388
ENSMUSG00000055053.19_6	chr10	-	6103	9	NIC	ENSMUSG00000055053.19	novel	1655	10	NA	NA	173	-69	intron_retention	TRUE	canonical	2	12	junction_1	7.82224392358101	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAGAAAAAAAAAA	253	False	NA	NA	False	AATAAA	-5	NA	81266666	81232088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_81236906_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81266619
ENSMUSG00000055053.19_8	chr10	-	3491	10	FSM	ENSMUSG00000055053.19	ENSMUST00000117966.2	1655	10	135	-1971	135	156	multi-exon	FALSE	canonical	3	13	junction_9	6.76775214792936	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAATAAAATCCAA	215	False	NA	-22	True	NA	NA	NA	81266704	81234815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81266619
ENSMUSG00000055065.8_0	chr15	-	1823	1	ISM	ENSMUSG00000055065.8	ENSMUST00000054014.9	4732	13	17177	6	16991	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	315	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGGTGTGAATTTTTT	970	False	NA	-46	True	AATAAA	-9	NA	79413765	79411942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79411900_79413800
ENSMUSG00000055065.8_1	chr15	-	4535	13	FSM	ENSMUSG00000055065.8	ENSMUST00000229877.2	4726	13	183	8	1	-8	multi-exon	FALSE	canonical	3	55	junction_12	13.0064086767511	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATAAAGGTGTGAATTTT	NA	False	NA	-48	True	AATAAA	-7	NA	79430759	79411944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79414719_79415878_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
ENSMUSG00000055065.8_3	chr15	-	2947	2	ISM	ENSMUSG00000055065.8	ENSMUST00000054014.9	4732	13	14899	6	14713	-6	3prime_fragment	FALSE	canonical	3	53	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGGTGTGAATTTTTT	NA	False	NA	-46	True	AATAAA	-9	NA	79416043	79411942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79414719_79415872
ENSMUSG00000055065.8_5	chr15	-	4540	13	FSM	ENSMUSG00000055065.8	ENSMUST00000054014.9	4732	13	184	8	2	-8	multi-exon	FALSE	canonical	3	53	junction_1	13.6714930502203	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATAAAGGTGTGAATTTT	NA	False	NA	-48	True	AATAAA	-7	NA	79430758	79411944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79414719_79415872_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
ENSMUSG00000055065.8_9	chr15	-	3078	2	ISM	ENSMUSG00000055065.8	ENSMUST00000229877.2	4726	13	14762	6	14576	-6	3prime_fragment	FALSE	canonical	3	60	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGGTGTGAATTTTTT	NA	False	NA	-46	True	AATAAA	-9	NA	79416180	79411942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79414719_79415878
ENSMUSG00000055067.16_17	chr1	-	1553	12	NNC	ENSMUSG00000055067.16	novel	6871	12	NA	NA	-8	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	115.168722797224	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCCACTGGCGACTTG	NA	False	NA	-14	True	AATAAA	-17	NA	179345578	178784823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_178785128_178799752_178799862_178871301_178871477_178877855_178877944_178913888_178914000_178920430_178920534_178921899_178921968_179232845_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
ENSMUSG00000055067.16_9	chr1	-	2020	6	FSM	ENSMUSG00000055067.16	ENSMUST00000111134.2	1229	6	30	-821	-6	821	multi-exon	FALSE	canonical	2	9	junction_1	165.062412438447	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATACTTTTTTTTTCCT	NA	False	NA	NA	False	AATAAA	-12	NA	179345576	179221967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_179223397_179232847_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
ENSMUSG00000055069.4_0	chr9	-	2883	2	FSM	ENSMUSG00000055069.4	ENSMUST00000068449.4	2971	2	59	29	59	-29	multi-exon	FALSE	canonical	3	13	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTGTGTATTTTTAATA	NA	False	NA	NA	False	TATAAA	-17	NA	53617473	53595438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_53598037_53617188
ENSMUSG00000055069.4_1	chr9	-	1123	1	Genic_Genomic	ENSMUSG00000055069.4	novel	NA	NA	NA	NA	21026	26	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAGTTTTGAATATTTA	NA	False	NA	NA	False	CATAAA	-11	NA	53596506	53595383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_-_53595400_53596500
ENSMUSG00000055093.11_0	chr6	+	365	1	FSM	ENSMUSG00000055093.11	ENSMUST00000119780.2	471	1	139	-33	139	33	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGATGCT	NA	False	NA	-11	True	AATAAA	-15	NA	122434001	122434366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_122434000_122434400
ENSMUSG00000055102.16_1	chr7	+	2367	5	FSM	ENSMUSG00000055102.16	ENSMUST00000032661.14	2362	5	-42	37	14	32	multi-exon	FALSE	canonical	3	39	junction_1	20.1416856295594	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGAGGAAAAGAATAAAGAA	2850	False	NA	-30	True	AATACA	-14	NA	43256606	43267672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43256699_43259209_43259403_43261406_43261534_43261970_43262064_43265810
ENSMUSG00000055102.16_18	chr7	+	2421	5	NNC	ENSMUSG00000055102.16	novel	1824	4	NA	NA	991	-19	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	33.3494752582406	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGTAAGAAGTACAAAT	3883	False	NA	-12	True	AATAAA	-2	NA	43257639	43267690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_43257768_43259209_43259403_43261406_43261534_43261970_43262064_43265810
ENSMUSG00000055102.16_20	chr7	+	2114	3	ISM	ENSMUSG00000055102.16	ENSMUST00000116324.3	1824	4	2074	-360	2074	-7	3prime_fragment	FALSE	canonical	3	56	junction_1	19	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACAAATACCCACATTCAT	7648	False	NA	0	True	AATAAA	-14	NA	43261404	43267702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43261534_43261970_43262064_43265810
ENSMUSG00000055102.16_21	chr7	+	1513	1	ISM	ENSMUSG00000055102.16	ENSMUST00000120935.2	2156	4	9532	3	6794	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATTGCTTATTTTAAATA	NA	False	NA	4	True	AATAAA	-12	NA	43266124	43267637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43266100_43267600
ENSMUSG00000055102.16_5	chr7	+	2205	4	FSM	ENSMUSG00000055102.16	ENSMUST00000120935.2	2156	4	8	-57	8	-12	multi-exon	FALSE	canonical	2	5	junction_1	36.4630711207319	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGTACAAATACCCACA	2844	False	NA	-5	True	AATAAA	-9	NA	43256600	43267697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43256699_43261406_43261534_43261970_43262064_43265810
ENSMUSG00000055102.16_6	chr7	+	2353	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	-5	-4	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCATTGCTTATTTTAAAT	2871	False	NA	3	True	AATAAA	-11	NA	43256627	43267636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
ENSMUSG00000055116.9_1	chr7	+	2853	20	FSM	ENSMUSG00000055116.9	ENSMUST00000047321.9	2908	20	51	4	-10	-4	multi-exon	FALSE	canonical	3	63	junction_10	14.0300429530047	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGTACTGTTCCCAATTG	3798	False	NA	NA	False	AATAAA	-16	NA	112806722	112913329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_112806852_112833830_112833904_112873832_112873961_112878663_112878790_112879856_112880010_112882463_112882503_112882727_112882770_112884205_112884364_112886323_112886404_112890667_112890761_112892384_112892503_112894650_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
ENSMUSG00000055116.9_21	chr7	+	1660	9	ISM	ENSMUSG00000055116.9	ENSMUST00000211770.2	2464	20	60875	-282	-9922	-4	3prime_fragment	FALSE	canonical	3	70	junction_1	14.6287388383278	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGTACTGTTCCCAATTG	NA	False	NA	NA	False	AATAAA	-16	NA	112894704	112913329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
ENSMUSG00000055116.9_3	chr7	+	2836	20	NNC	ENSMUSG00000055116.9	novel	2908	20	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_12	18.7486656958292	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGTACTGTTCCCAATTG	3812	False	NA	NA	False	AATAAA	-16	NA	112806736	112913329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_112806852_112833830_112833904_112873832_112873961_112878663_112878790_112879856_112880010_112882463_112882503_112882727_112882770_112884205_112884364_112886323_112886404_112890667_112890761_112892384_112892503_112894650_112894801_112898396_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
ENSMUSG00000055125.8_0	chr9	-	1533	1	FSM	ENSMUSG00000055125.8	ENSMUST00000196844.2	1496	1	-37	0	-15	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATGACTTGGGGGGAGA	NA	False	NA	NA	False	AATAAA	-17	NA	67667527	67665994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_67666000_67667500
ENSMUSG00000055125.8_1	chr9	-	1422	2	FSM	ENSMUSG00000055125.8	ENSMUST00000186205.2	1414	2	-8	0	-8	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATGACTTGGGGGGAGA	NA	False	NA	NA	False	AATAAA	-17	NA	67667520	67665994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_67666326_67666429
ENSMUSG00000055128.16_0	chr14	+	1216	6	FSM	ENSMUSG00000055128.16	ENSMUST00000068532.10	1324	6	105	3	1	-3	multi-exon	FALSE	canonical	3	30	junction_4	10.2097992144802	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTGGACACTGTCTTT	642	False	NA	11	True	AATAAA	-21	NA	47069686	47091647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641_47083790_47090835_47090944_47091155
ENSMUSG00000055128.16_1	chr14	+	411	2	FSM	ENSMUSG00000055128.16	ENSMUST00000140114.3	419	2	6	2	-4	-2	multi-exon	FALSE	canonical	3	59	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACTGTAGACGTGAAGAT	637	False	NA	NA	False	ATTAAA	-21	NA	47069681	47077869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_47069837_47077613
ENSMUSG00000055134.6_0	chr11	+	2327	1	FSM	ENSMUSG00000055134.6	ENSMUST00000068548.5	1417	1	-910	0	-38	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAAATCCAAAA	NA	False	NA	NA	False	NA	NA	NA	67812291	67814618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_67812300_67814600
ENSMUSG00000055137.8_1	chr13	-	1354	3	FSM	ENSMUSG00000055137.8	ENSMUST00000220514.2	1351	3	21	-24	-9	24	multi-exon	FALSE	canonical	3	10	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCCTTTTGATGCTACT	NA	False	NA	NA	False	AATAAA	-21	NA	17869333	17857270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_17858438_17859293_17859371_17869223
ENSMUSG00000055148.8_0	chr8	+	1508	3	FSM	ENSMUSG00000055148.8	ENSMUST00000067912.8	1847	3	29	310	29	-310	multi-exon	FALSE	canonical	3	2955	junction_2	16	2874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATCACGGTAGTGGTGT	NA	False	NA	29	True	ATTAAA	-16	NA	73072905	73075190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_73072994_73073269_73074087_73074587
ENSMUSG00000055148.8_1	chr8	+	1342	2	ISM	ENSMUSG00000055148.8	ENSMUST00000067912.8	1847	3	471	310	471	-310	3prime_fragment	FALSE	canonical	3	2955	junction_1	0	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATCACGGTAGTGGTGT	NA	False	NA	29	True	ATTAAA	-16	NA	73073347	73075190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_73074087_73074587
ENSMUSG00000055150.16_0	chr7	+	2065	5	FSM	ENSMUSG00000055150.16	ENSMUST00000207347.2	3883	5	16	1802	-14	-1	multi-exon	FALSE	canonical	2	8	junction_1	5.71729831301464	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACTCTTCTAATACTCAT	2970	False	NA	NA	False	AATATA	-13	NA	6366294	6382906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6366347_6374304_6374396_6376125_6376253_6378517_6378614_6381207
ENSMUSG00000055150.16_10	chr7	+	1997	4	FSM	ENSMUSG00000055150.16	ENSMUST00000208390.2	2965	4	16	952	-6	57	multi-exon	FALSE	canonical	2	6	junction_3	2.49443825784929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGATTGACTGTATTAAG	3000	False	NA	NA	False	CATAAA	-11	NA	6366324	6382964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6366347_6374304_6374396_6376125_6376253_6381207
ENSMUSG00000055150.16_6	chr7	+	2119	4	FSM	ENSMUSG00000055150.16	ENSMUST00000108559.3	1539	4	-402	-178	-402	178	multi-exon	FALSE	canonical	2	12	junction_1	4.49691252107735	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCATTGGTGAGTTCTTGA	NA	False	NA	NA	False	AGTAAA	-16	NA	6373960	6382668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6374396_6376125_6376253_6378517_6378614_6381207
ENSMUSG00000055184.5_0	chr1	+	1388	4	FSM	ENSMUSG00000055184.5	ENSMUST00000068613.5	2191	4	-37	840	-37	-840	multi-exon	FALSE	canonical	3	32	junction_2	3.29983164553722	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGGAACGTTTACTGTT	NA	False	NA	10	True	AGTAAA	-23	NA	131455603	131466770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_131456591_131458391_131458470_131461546_131461672_131466572
ENSMUSG00000055188.13_0	chrX	+	1666	2	NIC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-70	-3	intron_retention	FALSE	canonical	3	12	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGCATGAAATATCTTT	NA	False	NA	NA	False	AATACA	-11	NA	8011597	8014200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_8012858_8013794
ENSMUSG00000055188.13_1	chrX	+	906	3	FSM	ENSMUSG00000055188.13	ENSMUST00000124018.8	839	3	-73	6	-73	-6	multi-exon	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAAAGAGCATGAAATATC	NA	False	NA	NA	False	AATACA	-8	NA	8011594	8014197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_8011971_8012730_8012858_8013794
ENSMUSG00000055193.5_0	chr7	+	1854	4	ISM	ENSMUSG00000055193.5	ENSMUST00000068625.5	845	5	3027	-442	2974	442	3prime_fragment	FALSE	canonical	0	0	junction_1	2.82842712474619	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGCCTTAAAGCAGCTG	6109	False	NA	NA	False	NA	NA	NA	43586190	43589505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43586980_43587764_43588049_43588168_43588306_43588861
ENSMUSG00000055200.8_0	chr7	+	1322	2	FSM	ENSMUSG00000055200.8	ENSMUST00000068641.8	1329	2	2	5	2	-5	multi-exon	FALSE	canonical	3	104	junction_1	0	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTGGAATTGTAATTA	NA	False	NA	79	True	AATAAA	-11	NA	27173194	27176784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27173297_27175564
ENSMUSG00000055202.12_0	chr17	-	2186	4	FSM	ENSMUSG00000055202.12	ENSMUST00000200914.5	3536	4	12	1338	12	392	multi-exon	FALSE	canonical	3	5	junction_3	3.09120616516523	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	4496	False	NA	NA	False	NA	NA	NA	33028893	33015987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33017848_33019360_33019422_33019785_33019913_33028755
ENSMUSG00000055204.16_0	chr5	-	4237	9	ISM	ENSMUSG00000055204.16	ENSMUST00000197021.2	8067	34	86101	-745	9681	-177	3prime_fragment	FALSE	canonical	3	118	junction_8	26.5020635988974	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAAGAAGAATATGTGTC	NA	False	NA	-10	True	AATAAA	-10	NA	90401501	90375854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353
ENSMUSG00000055204.16_10	chr5	-	7736	33	NIC	ENSMUSG00000055204.16	novel	9311	34	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	1	34	junction_19	34.2873741111433	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTTTCTACTTGTATA	NA	False	NA	NA	False	ATTAAA	-13	NA	90514045	90376599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426248_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ENSMUSG00000055204.16_12	chr5	-	9232	34	FSM	ENSMUSG00000055204.16	ENSMUST00000168058.7	9311	34	382	-303	3	-175	multi-exon	TRUE	canonical	1	20	junction_19	38.5954031243672	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAGAATATGTGTCCT	NA	False	NA	-8	True	AATAAA	-12	NA	90514041	90375852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426248_90430709_90431463_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ENSMUSG00000055204.16_14	chr5	-	3969	8	ISM	ENSMUSG00000055204.16	ENSMUST00000197021.2	8067	34	86838	-742	10418	-180	3prime_fragment	FALSE	canonical	3	134	junction_6	22.6490527801216	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATACAAGAAGAATATGT	NA	False	NA	-13	True	AATAAA	-7	NA	90400764	90375857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725
ENSMUSG00000055204.16_15	chr5	-	8510	34	FSM	ENSMUSG00000055204.16	ENSMUST00000014421.15	10458	34	373	1575	-19	0	multi-exon	FALSE	canonical	1	25	junction_19	38.1218865865083	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTTTCTACTTGTATA	NA	False	NA	NA	False	ATTAAA	-13	NA	90514063	90376599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90430709_90431463_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ENSMUSG00000055204.16_17	chr5	-	5019	13	ISM	ENSMUSG00000055204.16	ENSMUST00000197021.2	8067	34	76388	-745	-32	-177	3prime_fragment	FALSE	canonical	3	118	junction_8	23.7533623350932	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAAGAAGAATATGTGTC	NA	False	NA	-10	True	AATAAA	-10	NA	90411214	90375854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117
ENSMUSG00000055204.16_4	chr5	-	7753	33	FSM	ENSMUSG00000055204.16	ENSMUST00000081914.13	8057	33	28	276	-15	0	multi-exon	FALSE	canonical	1	45	junction_32	30.9701847548574	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTTTCTACTTGTATA	NA	False	NA	NA	False	ATTAAA	-13	NA	90514059	90376599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ENSMUSG00000055204.16_57	chr5	-	5305	26	ISM	ENSMUSG00000055204.16	ENSMUST00000218526.2	4938	27	-17	161	-17	2	5prime_fragment	FALSE	canonical	1	25	junction_11	39.5180971201803	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTCGTGATTGTTAAA	NA	False	NA	-2	True	AATAAA	-16	NA	90514061	90401212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90430709_90431463_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ENSMUSG00000055204.16_58	chr5	-	3810	24	ISM	ENSMUSG00000055204.16	ENSMUST00000081914.13	8057	33	48	26306	5	-1415	5prime_fragment	FALSE	canonical	1	45	junction_23	31.4708134356053	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAGCGAAAAGAGAAAA	NA	False	NA	NA	False	AAGAAA	-29	NA	90514039	90402629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ENSMUSG00000055204.16_72	chr5	-	4539	25	ISM	ENSMUSG00000055204.16	ENSMUST00000081914.13	8057	33	35	24893	-8	-2	5prime_fragment	FALSE	canonical	1	45	junction_24	31.0563723555873	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAATTTTTCGTGATTGT	NA	False	NA	-6	True	AATAAA	-12	NA	90514052	90401216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
ENSMUSG00000055204.16_8	chr5	-	2205	6	ISM	ENSMUSG00000055204.16	ENSMUST00000197021.2	8067	34	96084	-2	-3971	2	3prime_fragment	FALSE	canonical	3	159	junction_3	16.7976188788769	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTTCTACTTGTATATT	NA	False	NA	NA	False	ATTAAA	-15	NA	90391518	90376597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722
ENSMUSG00000055235.12_0	chr5	-	1759	6	FSM	ENSMUSG00000055235.12	ENSMUST00000068693.12	2364	6	76	529	29	2	multi-exon	FALSE	canonical	3	12	junction_3	2.85657137141714	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGTCTTTGGTTTTCTT	NA	False	NA	-3	True	AATACA	-16	NA	24935649	24917264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24917750_24917847_24917952_24920523_24920660_24922964_24923386_24927632_24927775_24935178
ENSMUSG00000055235.12_1	chr5	-	1846	7	NIC	ENSMUSG00000055235.12	novel	2364	6	NA	NA	33	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	7.08676387515643	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTCTTTGGTTTTCTTT	NA	False	NA	-2	True	AATACA	-17	NA	24935645	24917263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_24917750_24917847_24917952_24918913_24919004_24920523_24920660_24922964_24923386_24927632_24927775_24935178
ENSMUSG00000055235.12_2	chr5	-	872	4	ISM	ENSMUSG00000055235.12	ENSMUST00000068693.12	2364	6	12615	528	-2531	-1	3prime_fragment	FALSE	canonical	3	12	junction_3	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTCTTTGGTTTTCTTT	2303	False	NA	-2	True	AATACA	-17	NA	24923110	24917263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_24917750_24917847_24917952_24920523_24920660_24922964
ENSMUSG00000055235.12_4	chr5	-	4337	5	FSM	ENSMUSG00000055235.12	ENSMUST00000142607.2	4362	5	22	3	22	1	multi-exon	FALSE	canonical	3	12	junction_2	3.16227766016838	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTTGTCTTTGGTTTTCT	NA	False	NA	-4	True	AATACA	-15	NA	24935656	24917265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24917750_24917847_24920660_24922964_24923386_24927632_24927775_24935178
ENSMUSG00000055235.12_8	chr5	-	439	1	FSM	ENSMUSG00000055235.12	ENSMUST00000196443.2	1109	1	673	-3	673	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTCTTTGGTTTTCTTT	7711	False	NA	-2	True	AATACA	-17	NA	24917702	24917263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24917300_24917700
ENSMUSG00000055239.11_0	chr6	-	1805	7	FSM	ENSMUSG00000055239.11	ENSMUST00000068697.11	3251	7	45	1401	45	54	multi-exon	FALSE	canonical	3	1059	junction_2	56.146880788003	1325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAACTACTGCATGAGGT	8510	False	NA	-30	True	AATAAA	-18	NA	72876917	72819497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72820114_72825207_72825491_72826426_72826602_72827365_72827468_72835756_72835897_72838740_72838909_72876596
ENSMUSG00000055240.18_0	chr17	-	2618	4	FSM	ENSMUSG00000055240.18	ENSMUST00000167107.10	2659	4	25	16	7	-16	multi-exon	FALSE	canonical	3	35	junction_1	5.79271573232759	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTTCATTCCCACACAAG	NA	False	NA	NA	False	AATAAA	-19	NA	33613590	33599244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33601561_33605395_33605442_33605658_33605786_33613461
ENSMUSG00000055240.18_3	chr17	-	1143	1	Genic_Genomic	ENSMUSG00000055240.18	novel	NA	NA	NA	NA	13003	43	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTGCTTAATAAAAAAAAA	7427	False	NA	NA	False	NA	NA	NA	33600328	33599185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_33599200_33600300
ENSMUSG00000055240.18_4	chr17	-	1032	4	NIC	ENSMUSG00000055240.18	novel	1428	6	NA	NA	13	2	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	19.6694913225759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTATATTCTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	33613566	33579478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_33580233_33605395_33605442_33605658_33605786_33613461
ENSMUSG00000055296.15_0	chr4	-	2741	1	ISM	ENSMUSG00000055296.15	ENSMUST00000068792.13	15981	18	77670	104	53691	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCGTTTCTTAGCTTT	4850	False	NA	NA	False	AATAAA	-16	NA	56869767	56867026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_56867000_56869800
ENSMUSG00000055296.15_1	chr4	-	4190	2	NNC	ENSMUSG00000055296.15	novel	15981	18	NA	NA	52206	-104	at_least_one_novel_splicesite	FALSE	non_canonical	1	4	junction_1	0	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCGTTTCTTAGCTTT	3365	False	NA	NA	False	AATAAA	-16	NA	56871252	56867026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_56869341_56869376
ENSMUSG00000055296.15_11	chr4	-	177	1	ISM	ENSMUSG00000055296.15	ENSMUST00000068792.13	15981	18	71564	8774	47585	4179	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56875873	56875696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_56875700_56875900
ENSMUSG00000055296.15_14	chr4	-	4542	17	NIC	ENSMUSG00000055296.15	novel	15981	18	NA	NA	-4	1547	combination_of_known_junctions	FALSE	canonical	3	49	junction_13	10.0853777197485	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACTAAGTTTGAGCTG	1	True	NA	NA	False	NA	NA	NA	56947428	56878328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_56880293_56886017_56886213_56888534_56888710_56890799_56890901_56899025_56899172_56899305_56899429_56903917_56904050_56906214_56906314_56910156_56910248_56912047_56912131_56916701_56916807_56923338_56923509_56924978_56925216_56926176_56926294_56936368_56936471_56937861_56937980_56946844
ENSMUSG00000055302.6_0	chr5	-	1554	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	43	51	43	-51	multi-exon	FALSE	canonical	3	1678	junction_1	0	1736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATCAGCCCGGAGAGT	NA	False	NA	-10	True	AATAAA	-17	NA	36954073	36952261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_36953289_36953546
ENSMUSG00000055302.6_1	chr5	-	661	1	ISM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	1194	51	1194	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATCAGCCCGGAGAGT	NA	False	NA	-10	True	AATAAA	-17	NA	36952922	36952261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_36952300_36952900
ENSMUSG00000055305.16_2	chr7	+	2638	5	NNC	ENSMUSG00000055305.16	novel	2324	3	NA	NA	-1616	-16	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	4.43705983732471	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACGTATATAGAAAAGGAT	NA	False	NA	NA	False	NA	NA	NA	23968228	23976236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_23968442_23968718_23968881_23971037_23971096_23972672_23972800_23974158
ENSMUSG00000055305.16_4	chr7	+	2531	4	FSM	ENSMUSG00000055305.16	ENSMUST00000108438.10	3508	4	-1	978	-1	-11	multi-exon	FALSE	canonical	3	7	junction_2	2.44948974278318	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATAGAAAAGGATTCTGA	NA	False	NA	NA	False	NA	NA	NA	23969843	23976241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_23970107_23971037_23971096_23972672_23972800_23974158
ENSMUSG00000055305.16_5	chr7	+	5122	3	FSM	ENSMUSG00000055305.16	ENSMUST00000032696.7	2324	3	-2832	34	-1684	-34	multi-exon	TRUE	canonical	3	7	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CATATAAATAAAAGAATTAA	NA	False	NA	NA	False	NA	NA	NA	23968160	23976218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_23971096_23972672_23972800_23974158
ENSMUSG00000055305.16_6	chr7	+	2018	1	ISM	ENSMUSG00000055305.16	ENSMUST00000108438.10	3508	4	4380	977	3232	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAGAAAAGGATTCTGAT	NA	False	NA	NA	False	NA	NA	NA	23974224	23976242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_23974200_23976200
ENSMUSG00000055312.3_0	chr2	+	1458	3	FSM	ENSMUSG00000055312.3	ENSMUST00000131060.2	688	3	-12	-758	10	-3	multi-exon	FALSE	canonical	0	0	junction_1	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACATGCTGAGTTGTGA	NA	False	NA	NA	False	AATAAA	-22	NA	105054674	105210138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_105054726_105128070_105128314_105208974
ENSMUSG00000055313.16_0	chr13	-	2616	5	FSM	ENSMUSG00000055313.16	ENSMUST00000239246.2	2642	5	19	7	19	-7	multi-exon	FALSE	canonical	1	2	junction_2	3.20156211871642	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACCTACCATTTCCTCA	NA	False	NA	NA	False	ATTAAA	-6	NA	21625195	21606028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_21607795_21612437_21612549_21617560_21617713_21618520_21618842_21624929
ENSMUSG00000055319.9_0	chr7	+	3437	19	FSM	ENSMUSG00000055319.9	ENSMUST00000042942.10	4505	19	18	1050	-16	-1050	multi-exon	TRUE	canonical	3	121	junction_10	14.275615919341	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATGCAATATGTTATTT	1949	False	NA	30	True	ATTAAA	-18	NA	128346684	128385510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357039_128357130_128359486_128359608_128363139_128363230_128364113_128364256_128365664_128365874_128367107_128367227_128367849_128368003_128369290_128369387_128373888_128374087_128378494_128378651_128379007_128379111_128380152_128380339_128380786_128380950_128381359_128381462_128385151
ENSMUSG00000055319.9_2	chr7	+	4274	20	NNC	ENSMUSG00000055319.9	novel	4505	19	NA	NA	-16	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	34.6985434804919	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAACTGTTGTCTCTCCCT	1949	False	NA	18	True	AATAAA	-30	NA	128346684	128386555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357039_128357130_128359486_128359608_128363139_128363230_128364113_128364256_128365664_128365874_128367107_128367227_128367849_128368003_128369290_128369387_128373888_128374087_128378494_128378651_128379007_128379111_128380152_128380339_128380786_128380950_128381359_128381462_128385151_128385885_128386092
ENSMUSG00000055319.9_3	chr7	+	3412	19	NNC	ENSMUSG00000055319.9	novel	4505	19	NA	NA	6	-1050	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_16	31.2793072450205	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATGCAATATGTTATTT	1971	False	NA	30	True	ATTAAA	-18	NA	128346706	128385510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357039_128357130_128359486_128359608_128363139_128363230_128364113_128364256_128365664_128365874_128367107_128367227_128367849_128368003_128369290_128369387_128373888_128374087_128378494_128378651_128379007_128379111_128380152_128380339_128380789_128380950_128381359_128381462_128385151
ENSMUSG00000055320.19_1	chr7	+	2260	12	FSM	ENSMUSG00000055320.19	ENSMUST00000084705.13	2543	12	33	250	-6	-250	multi-exon	TRUE	canonical	2	15	junction_1	4.44804720826366	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAATCTTTCTTTCTT	NA	False	NA	NA	False	ACTAAA	-10	NA	112278557	112498416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_112278934_112358590_112358847_112438622_112438688_112441246_112441310_112456004_112456140_112457360_112457408_112458275_112458338_112460638_112460764_112475281_112475456_112490925_112491067_112493518_112493672_112497753
ENSMUSG00000055320.19_12	chr7	+	2846	1	ISM	ENSMUSG00000055320.19	ENSMUST00000239442.2	9962	14	224619	21	64305	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCAGCTTTCTTATCTGCA	3132	False	NA	10	True	AATAAA	-16	NA	112503145	112505991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_112503100_112506000
ENSMUSG00000055322.17_0	chr1	-	2359	1	ISM	ENSMUSG00000055322.17	ENSMUST00000169786.8	9966	35	211850	8	15620	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCCAGCCTGTGGCCTGG	1042	False	NA	-10	True	TATAAA	-15	NA	73951756	73949397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_73949400_73951800
ENSMUSG00000055322.17_11	chr1	-	2734	11	ISM	ENSMUSG00000055322.17	ENSMUST00000187691.7	2813	12	429	0	133	0	3prime_fragment	FALSE	canonical	3	66	junction_7	8.94650769853802	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGTCCCTTGTGATA	NA	False	NA	-4	True	NA	NA	NA	73967243	73953069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070
ENSMUSG00000055322.17_15	chr1	-	7131	33	NIC	ENSMUSG00000055322.17	novel	9916	33	NA	NA	45	930	combination_of_known_junctions	FALSE	canonical	3	23	junction_32	14.0823124321789	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATACATGAGACATACTGA	NA	False	NA	NA	False	NA	NA	NA	74130465	73952139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070_73967270_73976383_73976477_73980136_73980213_73981068_73981266_73991579_73993110_74020072_74020190_74021391_74021458_74024177_74024308_74024861_74024938_74025033_74025095_74025421_74025535_74029469_74029554_74030833_74030899_74031258_74031382_74032321_74032373_74034359_74034541_74036207_74036264_74041445_74041497_74042675_74042718_74055303_74055346_74107767_74107806_74118357_74118473_74130331
ENSMUSG00000055322.17_2	chr1	-	5092	15	ISM	ENSMUSG00000055322.17	ENSMUST00000187584.7	9916	33	137897	2747	9589	932	3prime_fragment	FALSE	canonical	3	55	junction_11	10.898651854468	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATGAGACATACTGATA	9327	False	NA	NA	False	NA	NA	NA	73992613	73952137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070_73967270_73976383_73976477_73980136_73980213_73981068_73981266_73991579
ENSMUSG00000055322.17_21	chr1	-	6545	33	NIC	ENSMUSG00000055322.17	novel	9904	33	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_32	15.0083310198036	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGTCCCTTGTGATA	NA	False	NA	-4	True	NA	NA	NA	74137858	73953069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070_73967270_73976383_73976477_73980136_73980213_73981068_73981266_73991579_73993110_74020072_74020190_74021391_74021458_74024177_74024308_74024861_74024938_74025033_74025095_74025421_74025535_74029469_74029554_74030833_74030899_74031258_74031382_74032321_74032373_74034359_74034541_74036207_74036264_74041445_74041497_74042675_74042718_74055303_74055346_74107767_74107806_74118357_74118473_74137380
ENSMUSG00000055322.17_3	chr1	-	3059	10	ISM	ENSMUSG00000055322.17	ENSMUST00000187691.7	2813	12	3234	-988	2938	988	3prime_fragment	FALSE	canonical	3	66	junction_7	9.39266853573691	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGAATAGGTA	NA	False	NA	NA	False	AATAAA	-18	NA	73964438	73952081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864
ENSMUSG00000055322.17_6	chr1	-	6286	33	FSM	ENSMUSG00000055322.17	ENSMUST00000191104.7	9904	33	-61	3679	-61	0	multi-exon	FALSE	canonical	3	25	junction_32	13.8921276605673	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGTCCCTTGTGATA	NA	False	NA	-4	True	NA	NA	NA	74163669	73953069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070_73967270_73976383_73976477_73980136_73980213_73981068_73981266_73991579_73993110_74020072_74020190_74021391_74021458_74024177_74024308_74024861_74024938_74025033_74025095_74025421_74025535_74029469_74029554_74030833_74030899_74031258_74031382_74032321_74032373_74034359_74034541_74036207_74036264_74041445_74041497_74042675_74042718_74055303_74055346_74107767_74107806_74118357_74118473_74163450
ENSMUSG00000055322.17_9	chr1	-	4516	14	ISM	ENSMUSG00000055322.17	ENSMUST00000187584.7	9916	33	149320	2214	-1017	1465	3prime_fragment	FALSE	canonical	3	55	junction_11	11.3100468506242	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTCTTCAAGGGGTCTT	5608	False	NA	NA	False	AATAAA	-15	NA	73981190	73951604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070_73967270_73976383_73976477_73980136_73980213_73981068
ENSMUSG00000055333.15_0	chr11	-	4182	8	ISM	ENSMUSG00000055333.15	ENSMUST00000108864.2	14423	23	44597	0	44597	0	3prime_fragment	FALSE	canonical	1	2	junction_7	3.07059789431495	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTGTGTCGCTTAGAG	NA	False	NA	NA	False	AATAAA	-20	NA	55158486	55141435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_55143325_55144349_55144808_55146929_55147084_55147329_55147772_55151271_55151418_55152887_55153699_55156687_55156886_55158402
ENSMUSG00000055333.15_1	chr11	-	6738	15	ISM	ENSMUSG00000055333.15	ENSMUST00000108864.2	14423	23	30046	0	30046	0	3prime_fragment	FALSE	canonical	1	2	junction_7	2.78846018513473	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTGTGTCGCTTAGAG	NA	False	NA	NA	False	AATAAA	-20	NA	55173037	55141435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_55143325_55144349_55144808_55146929_55147084_55147329_55147772_55151271_55151418_55152887_55153699_55156687_55156886_55158402_55158547_55159000_55159139_55160079_55160295_55160911_55161296_55163820_55164055_55166809_55166964_55169712_55169910_55171863
ENSMUSG00000055333.15_2	chr11	-	1392	1	ISM	ENSMUSG00000055333.15	ENSMUST00000068853.13	14528	24	84557	7	60250	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTATTTTCTGTGTCGC	8874	False	NA	NA	False	AATAAA	-14	NA	55142833	55141441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_55141400_55142800
ENSMUSG00000055333.15_4	chr11	-	2939	4	ISM	ENSMUSG00000055333.15	ENSMUST00000108864.2	14423	23	55310	6	55310	-6	3prime_fragment	FALSE	canonical	2	7	junction_3	2.49443825784929	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTATTTTCTGTGTCGC	3934	False	NA	NA	False	AATAAA	-14	NA	55147773	55141441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_55143325_55144349_55144808_55146929_55147084_55147329
ENSMUSG00000055333.15_6	chr11	-	4914	11	ISM	ENSMUSG00000055333.15	ENSMUST00000108864.2	14423	23	41851	2	41851	-2	3prime_fragment	FALSE	canonical	1	2	junction_7	2.66270539113887	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTCTGTGTCGCTTAG	NA	False	NA	NA	False	AATAAA	-18	NA	55161232	55141437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_55143325_55144349_55144808_55146929_55147084_55147329_55147772_55151271_55151418_55152887_55153699_55156687_55156886_55158402_55158547_55159000_55159139_55160079_55160295_55160911
ENSMUSG00000055333.15_9	chr11	-	3348	6	ISM	ENSMUSG00000055333.15	ENSMUST00000108864.2	14423	23	49931	6	49931	-6	3prime_fragment	FALSE	canonical	2	7	junction_3	1.95959179422654	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTATTTTCTGTGTCGC	NA	False	NA	NA	False	AATAAA	-14	NA	55153152	55141441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_55143325_55144349_55144808_55146929_55147084_55147329_55147772_55151271_55151418_55152887
ENSMUSG00000055334.5_0	chr9	+	1344	9	FSM	ENSMUSG00000055334.5	ENSMUST00000068856.5	1391	9	42	5	42	-5	multi-exon	TRUE	canonical	3	166	junction_1	20.9105236663265	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGGTTGCTTGTGGTTA	NA	False	NA	3	True	AATATA	-14	NA	56858203	56890485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_56858238_56864297_56864461_56870279_56870428_56877537_56877643_56877873_56877971_56882496_56882595_56885302_56885381_56888128_56888210_56889945
ENSMUSG00000055334.5_1	chr9	+	1347	9	NNC	ENSMUSG00000055334.5	novel	1391	9	NA	NA	43	-7	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	66.806506980982	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAAAGGTTGCTTGTGGT	NA	False	NA	1	True	AATATA	-12	NA	56858204	56890483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_56858238_56864297_56864467_56870279_56870428_56877537_56877643_56877873_56877971_56882496_56882595_56885302_56885381_56888128_56888210_56889945
ENSMUSG00000055334.5_11	chr9	+	1309	8	ISM	ENSMUSG00000055334.5	ENSMUST00000068856.5	1391	9	6135	7	6135	-7	3prime_fragment	FALSE	canonical	3	194	junction_5	16.2468207250979	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAAAGGTTGCTTGTGGT	NA	False	NA	1	True	AATATA	-12	NA	56864296	56890483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_56864461_56870279_56870428_56877537_56877643_56877873_56877971_56882496_56882595_56885302_56885381_56888128_56888210_56889945
ENSMUSG00000055334.5_14	chr9	+	1828	4	ISM	ENSMUSG00000055334.5	ENSMUST00000068856.5	1391	9	23306	3	23306	-3	3prime_fragment	FALSE	canonical	3	194	junction_1	4.98887651569859	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTTGCTTGTGGTTATT	NA	False	NA	5	True	AATATA	-16	NA	56881467	56890487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_56882595_56885302_56885381_56888128_56888210_56889945
ENSMUSG00000055334.5_2	chr9	+	4524	4	ISM	ENSMUSG00000055334.5	ENSMUST00000068856.5	1391	9	46	8770	46	-8770	intron_retention	FALSE	canonical	3	166	junction_1	18.1536650722535	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56858207	56881720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_56858238_56864297_56864461_56870279_56870428_56877537
ENSMUSG00000055371.18_0	chr2	-	4145	14	FSM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	22	550	2	-550	multi-exon	FALSE	canonical	3	181	junction_4	18.080359738789	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATTTTGAAAAATAATTGT	NA	False	NA	NA	False	AATAAA	-10	NA	52632190	52582225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_52584950_52590016_52590184_52593113_52593265_52596410_52596466_52597929_52598018_52598154_52598238_52599607_52599703_52604829_52605017_52605699_52605770_52606436_52606584_52609708_52609808_52609913_52609990_52610895_52610981_52632072
ENSMUSG00000055371.18_2	chr2	-	2077	1	ISM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	47918	542	47874	-542	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAATTGTAAATGTGG	NA	False	NA	NA	False	AATAAA	-18	NA	52584294	52582217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_52582200_52584300
ENSMUSG00000055373.9_0	chr4	-	3983	1	ISM	ENSMUSG00000055373.9	ENSMUST00000084770.5	12134	3	186824	8	186533	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCACAACCTTTTTGGT	2362	False	NA	-8	True	AATAAA	-13	NA	25613322	25609339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_25609300_25613300
ENSMUSG00000055373.9_1	chr4	-	4220	3	FSM	ENSMUSG00000055373.9	ENSMUST00000084770.5	12134	3	305	7609	14	1957	multi-exon	FALSE	canonical	3	36	junction_2	8.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCATACTTTCTGTAAGCA	-15	True	NA	-19	True	AATAAA	-8	NA	25799841	25616940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_25620821_25709027_25709115_25799588
ENSMUSG00000055373.9_2	chr4	-	3234	1	ISM	ENSMUSG00000055373.9	ENSMUST00000084770.5	12134	3	180496	7085	180205	2481	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAGAATGAATAAAAA	NA	False	NA	NA	False	TTTAAA	-23	NA	25619650	25616416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_25616400_25619600
ENSMUSG00000055401.15_0	chr4	-	1098	6	FSM	ENSMUSG00000055401.15	ENSMUST00000056965.12	1163	6	60	5	60	-5	multi-exon	FALSE	canonical	3	138	junction_5	262.901958912443	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGCCTGGTTTGAGGG	NA	False	NA	-23	True	AATAAA	-11	NA	148236456	148230249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236398
ENSMUSG00000055401.15_2	chr4	-	1138	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	-2	-325	-2	-5	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGCCTGGTTTGAGGG	NA	False	NA	-23	True	AATAAA	-11	NA	148236384	148230249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
ENSMUSG00000055401.15_5	chr4	-	1041	5	FSM	ENSMUSG00000055401.15	ENSMUST00000126615.8	794	5	52	-299	52	-5	multi-exon	FALSE	canonical	3	782	junction_1	8.18535277187245	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGCCTGGTTTGAGGG	NA	False	NA	-23	True	AATAAA	-11	NA	148234124	148230249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835
ENSMUSG00000055401.15_6	chr4	-	1143	6	FSM	ENSMUSG00000055401.15	ENSMUST00000168503.8	1240	6	20	77	20	-5	multi-exon	FALSE	canonical	3	230	junction_5	226.118552976088	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGCCTGGTTTGAGGG	NA	False	NA	-23	True	AATAAA	-11	NA	148236572	148230249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
ENSMUSG00000055401.15_8	chr4	-	1166	6	FSM	ENSMUSG00000055401.15	ENSMUST00000030858.14	1346	6	174	6	-93	-5	multi-exon	FALSE	canonical	3	164	junction_5	252.506158340742	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGCCTGGTTTGAGGG	NA	False	NA	-23	True	AATAAA	-11	NA	148236196	148230249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236070
ENSMUSG00000055403.14_0	chr6	+	2524	5	NNC	ENSMUSG00000055403.14	novel	2620	4	NA	NA	2	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	5.24404424085076	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTGTACAAAATTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	89073093	89087013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_89073217_89075553_89075616_89078495_89078565_89084649_89085554_89085647
ENSMUSG00000055403.14_2	chr6	+	2528	5	NNC	ENSMUSG00000055403.14	novel	2620	4	NA	NA	2	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5.24404424085076	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAAATTCTTTTTGTAAA	NA	False	NA	NA	False	AATAAA	-23	NA	89073093	89087021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_89073217_89075553_89075616_89078495_89078565_89084649_89085540_89085637
ENSMUSG00000055407.15_0	chr7	+	4031	3	FSM	ENSMUSG00000055407.15	ENSMUST00000127492.2	4920	3	878	11	21	-11	multi-exon	FALSE	canonical	3	32	junction_2	24	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACAAACACCACTTTCT	NA	False	NA	-5	True	AATAAA	-5	NA	98917573	98969548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_98918521_98964895_98965110_98966678
ENSMUSG00000055407.15_1	chr7	+	2313	3	FSM	ENSMUSG00000055407.15	ENSMUST00000107100.3	2335	3	21	1	21	0	multi-exon	FALSE	canonical	3	44	junction_2	18	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGTGTCTCTGGCTCTGT	NA	False	NA	12	True	AATAAA	-18	NA	98917573	98986343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_98918521_98964895_98965110_98985191
ENSMUSG00000055430.5_0	chr6	-	1850	1	FSM	ENSMUSG00000055430.5	ENSMUST00000059539.5	1844	1	-9	3	-9	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTACCTGTACTGTCATC	NA	False	NA	-4	True	AATAAA	-17	NA	58884070	58882220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_58882200_58884100
ENSMUSG00000055436.19_0	chr3	-	2629	12	FSM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	21	4	9	-4	multi-exon	TRUE	canonical	3	573	junction_1	36.7913482463625	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCATGCTTCTGTAGA	NA	False	NA	-31	True	AATAAA	-13	NA	157737382	157716559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
ENSMUSG00000055436.19_1	chr3	-	2650	12	ISM	ENSMUSG00000055436.19	ENSMUST00000069025.14	1643	13	4806	-946	9	-4	3prime_fragment	FALSE	canonical	3	86	junction_3	163.435887295901	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCATGCTTCTGTAGA	NA	False	NA	-31	True	AATAAA	-13	NA	157737382	157716559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_157717841_157717946_157718086_157718416_157718534_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
ENSMUSG00000055436.19_11	chr3	-	2622	13	FSM	ENSMUSG00000055436.19	ENSMUST00000121326.8	3106	13	34	450	1	-4	multi-exon	FALSE	canonical	3	316	junction_12	95.9239788698437	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCATGCTTCTGTAGA	NA	False	NA	-31	True	AATAAA	-13	NA	157742242	157716559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
ENSMUSG00000055436.19_4	chr3	-	2640	13	FSM	ENSMUSG00000055436.19	ENSMUST00000069025.14	1643	13	-51	-946	4	-4	multi-exon	FALSE	canonical	3	86	junction_3	173.80710492446	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCATGCTTCTGTAGA	NA	False	NA	-31	True	AATAAA	-13	NA	157742239	157716559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_157717841_157717946_157718086_157718416_157718534_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
ENSMUSG00000055447.20_1	chr16	+	1335	12	FSM	ENSMUSG00000055447.20	ENSMUST00000230641.2	1032	12	-100	-203	31	-2	multi-exon	FALSE	canonical	3	19	junction_2	27.2824225191312	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAATTGGAATCCCATTT	NA	False	NA	17	True	AATAAA	-21	NA	49676049	49731442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
ENSMUSG00000055447.20_16	chr16	+	2486	1	ISM	ENSMUSG00000055447.20	ENSMUST00000084838.14	5250	10	56874	6	45686	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTATTTTGTTGGGTTAT	NA	False	NA	NA	False	AATAAA	-8	NA	49732881	49735367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_49732900_49735400
ENSMUSG00000055447.20_2	chr16	+	1882	9	NIC	ENSMUSG00000055447.20	novel	5250	10	NA	NA	25	650	combination_of_known_junctions	FALSE	canonical	3	49	junction_8	11.8532695911297	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGGCAAAAGAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	49676043	49732104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49731231
ENSMUSG00000055447.20_4	chr16	+	1887	8	NIC	ENSMUSG00000055447.20	novel	5250	10	NA	NA	4	655	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	27.9335947254505	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAAGAAAAAAAATCTACA	NA	False	NA	NA	False	TTTAAA	-3	NA	49676011	49732109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49731231
ENSMUSG00000055447.20_5	chr16	+	1267	10	NIC	ENSMUSG00000055447.20	novel	1358	11	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	22.7107414625278	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAATTGGAATCCCATTT	NA	False	NA	17	True	AATAAA	-21	NA	49676021	49731442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49731231
ENSMUSG00000055447.20_6	chr16	+	1291	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229206.2	1316	11	23	2	12	-2	multi-exon	FALSE	canonical	3	21	junction_9	24.8766959220874	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAATTGGAATCCCATTT	NA	False	NA	17	True	AATAAA	-21	NA	49676030	49731442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
ENSMUSG00000055447.20_7	chr16	+	1251	10	FSM	ENSMUSG00000055447.20	ENSMUST00000084838.14	5250	10	68	3931	57	-2	multi-exon	FALSE	canonical	3	19	junction_2	24.0960014099978	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAATTGGAATCCCATTT	NA	False	NA	17	True	AATAAA	-21	NA	49676075	49731442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49731231
ENSMUSG00000055447.20_8	chr16	+	1271	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229101.2	1358	11	80	7	57	-7	multi-exon	FALSE	canonical	3	19	junction_2	27.0739727413618	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTAACCAATTGGAATCC	NA	False	NA	12	True	AATAAA	-16	NA	49676075	49731437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49731231
ENSMUSG00000055471.8_0	chr17	-	1571	2	ISM	ENSMUSG00000055471.8	ENSMUST00000086639.6	5454	29	729575	-276	729575	276	3prime_fragment	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGTAAAAAAAAAAAATT	NA	False	NA	NA	False	AAGAAA	-13	NA	72181247	72175690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_72177127_72181112
ENSMUSG00000055485.7_0	chr2	-	1782	1	Genic_Genomic	ENSMUSG00000055485.7	novel	NA	NA	NA	NA	9924	32	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCAGAAAACTGCCTGGC	3517	False	NA	30	True	NA	NA	NA	156859468	156857686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_156857700_156859500
ENSMUSG00000055485.7_10	chr2	-	3163	5	ISM	ENSMUSG00000055485.7	ENSMUST00000069098.7	7864	15	115	23399	115	-2148	5prime_fragment	FALSE	canonical	2	14	junction_1	1.22474487139159	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACGGGAAAAAAAAGA	7634	False	NA	NA	False	NA	NA	NA	156921059	156881117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_156882923_156883813_156883877_156895438_156895598_156902107_156902333_156920148
ENSMUSG00000055485.7_2	chr2	-	3711	2	ISM	ENSMUSG00000055485.7	ENSMUST00000069098.7	7864	15	58046	9	6264	-9	3prime_fragment	FALSE	canonical	3	12	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTCTTCAAATGCCTT	NA	False	NA	-11	True	NA	NA	NA	156863128	156857727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_156860420_156862109
ENSMUSG00000055485.7_3	chr2	-	7714	15	FSM	ENSMUSG00000055485.7	ENSMUST00000069098.7	7864	15	140	10	140	-10	multi-exon	FALSE	canonical	2	9	junction_5	3.79580864445326	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTCTTCAAATGCCT	7659	False	NA	-12	True	NA	NA	NA	156921034	156857728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156860420_156862109_156863458_156864736_156864808_156865716_156865789_156869306_156869559_156871399_156871568_156872438_156872544_156872707_156872939_156875177_156875304_156879089_156879231_156881746_156882923_156883813_156883877_156895438_156895598_156902107_156902333_156920148
ENSMUSG00000055485.7_4	chr2	-	5669	11	ISM	ENSMUSG00000055485.7	ENSMUST00000069098.7	7864	15	38976	-2	-39	2	3prime_fragment	FALSE	canonical	2	9	junction_5	4.4226688774992	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTTTTATGTCTTGG	5037	False	NA	0	True	NA	NA	NA	156882198	156857716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_156860420_156862109_156863458_156864736_156864808_156865716_156865789_156869306_156869559_156871399_156871568_156872438_156872544_156872707_156872939_156875177_156875304_156879089_156879231_156881746
ENSMUSG00000055485.7_5	chr2	-	4409	5	ISM	ENSMUSG00000055485.7	ENSMUST00000069098.7	7864	15	51651	0	-131	0	3prime_fragment	FALSE	canonical	3	12	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATGCCTTTTATGTCTT	NA	False	NA	-2	True	NA	NA	NA	156869523	156857718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_156860420_156862109_156863458_156864736_156864808_156865716_156865789_156869306
ENSMUSG00000055485.7_9	chr2	-	5252	14	ISM	ENSMUSG00000055485.7	ENSMUST00000069098.7	7864	15	26	4276	26	795	5prime_fragment	FALSE	canonical	2	9	junction_4	3.83382639826988	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTAGCCTTGAACTTTCT	7545	False	NA	NA	False	NA	NA	NA	156921148	156861994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_156863458_156864736_156864808_156865716_156865789_156869306_156869559_156871399_156871568_156872438_156872544_156872707_156872939_156875177_156875304_156879089_156879231_156881746_156882923_156883813_156883877_156895438_156895598_156902107_156902333_156920148
ENSMUSG00000055491.15_0	chr19	+	5115	14	NIC	ENSMUSG00000055491.15	novel	5246	14	NA	NA	-17	1	combination_of_known_junctions	TRUE	canonical	3	90	junction_2	121.186784289338	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTAAGTGGTATTTGG	NA	False	NA	14	True	AATAAA	-16	NA	46045002	46061241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_46045183_46049841_46050016_46050579_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ENSMUSG00000055491.15_1	chr19	+	5112	14	FSM	ENSMUSG00000055491.15	ENSMUST00000111899.8	5246	14	25	109	-17	1	multi-exon	TRUE	canonical	3	236	junction_7	80.0611452719015	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTAAGTGGTATTTGG	NA	False	NA	14	True	AATAAA	-16	NA	46045002	46061241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ENSMUSG00000055491.15_2	chr19	+	5115	14	NIC	ENSMUSG00000055491.15	novel	5246	14	NA	NA	-17	1	combination_of_known_junctions	FALSE	canonical	3	238	junction_7	79.6883723412051	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTAAGTGGTATTTGG	NA	False	NA	14	True	AATAAA	-16	NA	46045002	46061241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ENSMUSG00000055491.15_3	chr19	+	5118	14	FSM	ENSMUSG00000055491.15	ENSMUST00000062322.11	5205	14	-20	107	-17	1	multi-exon	FALSE	canonical	3	90	junction_2	120.971168749579	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTAAGTGGTATTTGG	NA	False	NA	14	True	AATAAA	-16	NA	46045002	46061241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46045183_46049841_46050016_46050579_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ENSMUSG00000055491.15_4	chr19	+	5106	14	NIC	ENSMUSG00000055491.15	novel	5246	14	NA	NA	-17	1	combination_of_known_junctions	FALSE	canonical	3	156	junction_4	105.735071407002	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTAAGTGGTATTTGG	NA	False	NA	14	True	AATAAA	-16	NA	46045002	46061241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050934_46051050_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ENSMUSG00000055491.15_71	chr19	+	3468	10	ISM	ENSMUSG00000055491.15	ENSMUST00000111899.8	5246	14	7114	109	-4181	1	3prime_fragment	FALSE	canonical	3	236	junction_3	88.0661928380446	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTAAGTGGTATTTGG	NA	False	NA	14	True	AATAAA	-16	NA	46052091	46061241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ENSMUSG00000055491.15_74	chr19	+	3303	10	ISM	ENSMUSG00000055491.15	ENSMUST00000062322.11	5205	14	7237	107	-4013	1	3prime_fragment	FALSE	canonical	3	238	junction_3	87.5518893761484	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTAAGTGGTATTTGG	NA	False	NA	14	True	AATAAA	-16	NA	46052259	46061241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ENSMUSG00000055491.15_8	chr19	+	5103	14	NIC	ENSMUSG00000055491.15	novel	5246	14	NA	NA	-17	1	combination_of_known_junctions	FALSE	canonical	3	156	junction_4	105.996985554994	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTAAGTGGTATTTGG	NA	False	NA	14	True	AATAAA	-16	NA	46045002	46061241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050934_46051050_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
ENSMUSG00000055531.13_1	chr10	-	3652	10	NIC	ENSMUSG00000055531.13	novel	6526	10	NA	NA	-10	1520	combination_of_known_junctions	FALSE	canonical	3	201	junction_2	131.387279764636	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAACTGGAGATTTTG	4505	False	NA	NA	False	AATACA	-9	NA	117212844	117183423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_117185373_117191839_117192033_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ENSMUSG00000055531.13_2	chr10	-	3651	10	FSM	ENSMUSG00000055531.13	ENSMUST00000069168.13	6526	10	29	2846	-12	1520	multi-exon	FALSE	canonical	3	507	junction_5	44.0656076524286	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAACTGGAGATTTTG	4503	False	NA	NA	False	AATACA	-9	NA	117212846	117183423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ENSMUSG00000055531.13_3	chr10	-	3569	1	Genic_Genomic	ENSMUSG00000055531.13	novel	NA	NA	NA	NA	7817	2	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTTGCAGTTTGTTCT	6125	False	NA	-10	True	AATAAA	-15	NA	117184144	117180575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_117180600_117184100
ENSMUSG00000055531.13_4	chr10	-	3632	11	FSM	ENSMUSG00000055531.13	ENSMUST00000176670.8	2227	11	-12	-1393	-12	1390	multi-exon	FALSE	canonical	3	61	junction_6	215.998518513438	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTGTGTGGACATACAT	4503	False	NA	NA	False	NA	NA	NA	117212846	117183553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197678_117197790_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ENSMUSG00000055538.8_0	chr14	-	4550	4	FSM	ENSMUSG00000055538.8	ENSMUST00000069180.8	4556	4	-1	7	-1	-5	multi-exon	FALSE	canonical	3	42	junction_3	4.78423336480244	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGGAGGCTCGTGAGT	NA	False	NA	-8	True	ATTAAA	-11	NA	25769464	25712072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_25715827_25720050_25720216_25757434_25757636_25769034
ENSMUSG00000055538.8_1	chr14	-	2651	1	ISM	ENSMUSG00000055538.8	ENSMUST00000069180.8	4556	4	54740	7	5493	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGGAGGCTCGTGAGT	NA	False	NA	-8	True	ATTAAA	-11	NA	25714723	25712072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_25712100_25714700
ENSMUSG00000055538.8_4	chr14	-	3820	2	FSM	ENSMUSG00000055538.8	ENSMUST00000184642.2	3925	2	99	6	99	-6	multi-exon	FALSE	canonical	3	44	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGATGGAGGCTCGTGAG	NA	False	NA	-9	True	ATTAAA	-10	NA	25720117	25712073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_25715827_25720050
ENSMUSG00000055553.17_0	chr8	-	822	7	FSM	ENSMUSG00000055553.17	ENSMUST00000121623.8	884	7	66	-4	7	4	multi-exon	FALSE	canonical	3	76	junction_3	10409.9140993361	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAATTGGTGTCTAGAGTG	NA	False	NA	-9	True	AATAAA	-23	NA	70975747	70960917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70975712
ENSMUSG00000055553.17_14	chr8	-	1392	5	NIC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	9	-9	combination_of_known_junctions	FALSE	canonical	3	33	junction_4	284.550852221532	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGGAACACTTATAGCA	NA	False	NA	-22	True	AATAAA	-11	NA	70980597	70966054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70980294
ENSMUSG00000055553.17_26	chr8	-	3373	5	NIC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	319	-9	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	289.113299590316	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGGAACACTTATAGCA	NA	False	NA	-22	True	AATAAA	-11	NA	70975421	70966054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70973137
ENSMUSG00000055553.17_5	chr8	-	670	1	ISM	ENSMUSG00000055553.17	ENSMUST00000093456.12	1216	5	9106	9	9016	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGGAACACTTATAGCA	NA	False	NA	-22	True	AATAAA	-11	NA	70966724	70966054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_70966100_70966700
ENSMUSG00000055553.17_6	chr8	-	1125	5	FSM	ENSMUSG00000055553.17	ENSMUST00000093456.12	1216	5	82	9	6	-9	multi-exon	FALSE	canonical	3	383	junction_4	146.224784150978	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGGAACACTTATAGCA	NA	False	NA	-22	True	AATAAA	-11	NA	70975748	70966054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70975712
ENSMUSG00000055553.17_7	chr8	-	1098	4	ISM	ENSMUSG00000055553.17	ENSMUST00000093456.12	1216	5	3116	3	3026	-3	3prime_fragment	FALSE	canonical	3	531	junction_1	95.124479849651	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACACTTATAGCAACAGTG	NA	False	NA	-16	True	AATAAA	-17	NA	70972714	70966048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586
ENSMUSG00000055555.2_0	chrX	+	3859	4	NIC	ENSMUSG00000055555.2	novel	1427	5	NA	NA	-20	-3	intron_retention	FALSE	canonical	3	124	junction_3	20.138409955991	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAATACTGTTTACCTGTA	NA	False	NA	NA	False	AATAAA	-15	NA	52726772	52740405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_52727016_52729333_52729516_52735693_52738355_52739632
ENSMUSG00000055555.2_1	chrX	+	1448	5	FSM	ENSMUSG00000055555.2	ENSMUST00000069209.2	1427	5	-23	2	-23	-2	multi-exon	FALSE	canonical	3	124	junction_4	18.2397231338636	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATACTGTTTACCTGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	52726769	52740406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_52727016_52729333_52729516_52735693_52735827_52738241_52738355_52739632
ENSMUSG00000055555.2_6	chrX	+	661	1	ISM	ENSMUSG00000055555.2	ENSMUST00000069209.2	1427	5	12949	6	12949	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATCAATACTGTTTACCT	NA	False	NA	NA	False	AATAAA	-12	NA	52739741	52740402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_52739700_52740400
ENSMUSG00000055560.9_1	chr13	-	1473	4	FSM	ENSMUSG00000055560.9	ENSMUST00000056470.10	3334	4	7	1854	-3	901	multi-exon	FALSE	canonical	3	28	junction_1	6.23609564462324	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATATGGGAAGTGTGATAA	NA	False	NA	-29	True	NA	NA	NA	67569530	67555681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67556862_67561226_67561323_67561952_67562080_67569460
ENSMUSG00000055560.9_3	chr13	-	289	1	ISM	ENSMUSG00000055560.9	ENSMUST00000056470.10	3334	4	13572	1849	13518	906	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAGTGTGATAAAGCCT	NA	False	NA	-24	True	NA	NA	NA	67555965	67555676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67555700_67556000
ENSMUSG00000055560.9_5	chr13	-	3845	3	FSM	ENSMUSG00000055560.9	ENSMUST00000224496.2	504	3	-14	-3327	-4	-1027	multi-exon	FALSE	canonical	3	38	junction_2	2.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTTAAAACAATCGTCATT	NA	False	NA	NA	False	NA	NA	NA	67569541	67557685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67561323_67561952_67562080_67569460
ENSMUSG00000055567.19_0	chr1	+	3024	3	ISM	ENSMUSG00000055567.19	ENSMUST00000152844.2	1912	6	13940	-1325	13940	-1160	3prime_fragment	FALSE	canonical	0	0	junction_2	2	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTGTGATGCTTAATAAT	NA	False	NA	NA	False	AGTAAA	-16	NA	66732797	66737147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_66732963_66733523_66733724_66734488
ENSMUSG00000055567.19_2	chr1	+	4228	4	ISM	ENSMUSG00000055567.19	ENSMUST00000152844.2	1912	6	12785	-2476	12785	-9	3prime_fragment	FALSE	canonical	0	0	junction_1	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATTTAATGTGCTCTAAT	NA	False	NA	NA	False	AATAAA	-12	NA	66731642	66738298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_66731749_66732850_66732963_66733523_66733724_66734488
ENSMUSG00000055612.16_1	chr2	+	2371	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	50	3	-44	-3	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	1958	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGTGTGTTTATTTTTG	8619	False	NA	NA	False	AATAAA	-13	NA	72306552	72317234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
ENSMUSG00000055629.6_2	chr7	+	3660	20	FSM	ENSMUSG00000055629.6	ENSMUST00000048002.7	3556	20	-107	3	-107	-3	multi-exon	FALSE	canonical	3	132	junction_14	21.3235203654468	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGTTTTCTGTGAGTG	NA	False	NA	21	True	AATGAA	-22	NA	140640909	140652310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140641338_140643749_140643854_140644190_140644287_140644372_140644469_140644553_140644645_140644719_140644821_140644966_140645035_140645239_140645319_140646844_140646912_140647022_140647158_140647239_140647350_140647432_140647534_140647612_140647714_140647785_140648675_140650323_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
ENSMUSG00000055629.6_3	chr7	+	2632	14	ISM	ENSMUSG00000055629.6	ENSMUST00000048002.7	3556	20	-119	3485	-119	-1937	5prime_fragment	FALSE	canonical	3	174	junction_7	12.6579955787244	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGACTTCATCTCTCC	NA	False	NA	NA	False	NA	NA	NA	140640897	140648828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140641338_140643749_140643854_140644190_140644287_140644372_140644469_140644553_140644645_140644719_140644821_140644966_140645035_140645239_140645319_140646844_140646912_140647022_140647158_140647239_140647350_140647432_140647534_140647612_140647714_140647785
ENSMUSG00000055629.6_50	chr7	+	3027	17	ISM	ENSMUSG00000055629.6	ENSMUST00000048002.7	3556	20	3356	8	-34	-8	3prime_fragment	FALSE	canonical	3	132	junction_11	22.4428962870214	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTGACTTGTTTTCTGT	NA	False	NA	16	True	AATGAA	-17	NA	140644372	140652305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140644469_140644553_140644645_140644719_140644821_140644966_140645035_140645239_140645319_140646844_140646912_140647022_140647158_140647239_140647350_140647432_140647534_140647612_140647714_140647785_140648675_140650323_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
ENSMUSG00000055629.6_63	chr7	+	1621	7	ISM	ENSMUSG00000055629.6	ENSMUST00000209546.2	3076	16	3836	8	-1945	-8	3prime_fragment	FALSE	canonical	3	132	junction_1	32.7503180646133	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTGACTTGTTTTCTGT	NA	False	NA	16	True	AATGAA	-17	NA	140648242	140652305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140648675_140650323_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
ENSMUSG00000055629.6_65	chr7	+	1417	6	ISM	ENSMUSG00000055629.6	ENSMUST00000209546.2	3076	16	5694	3	-87	-3	3prime_fragment	FALSE	canonical	3	186	junction_1	17.8706463229509	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGTTTTCTGTGAGTG	NA	False	NA	21	True	AATGAA	-22	NA	140650100	140652310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
ENSMUSG00000055632.19_10	chr2	+	4715	4	NIC	ENSMUSG00000055632.19	novel	2495	13	NA	NA	-207	-2	intron_retention	FALSE	canonical	2	13	junction_2	4.98887651569859	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGATGTCTTTGCTGA	NA	False	NA	NA	False	TATAAA	-17	NA	31344512	31350747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31344703_31344816_31344940_31345503_31349220_31350061
ENSMUSG00000055632.19_11	chr2	+	2706	6	NIC	ENSMUSG00000055632.19	novel	2495	13	NA	NA	-177	-4	intron_retention	FALSE	canonical	2	13	junction_2	4.8	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGACTTGATGTCTTTGCT	NA	False	NA	NA	False	TATAAA	-15	NA	31344542	31350745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31344703_31344816_31344940_31345503_31345639_31347071_31347201_31347744_31349220_31350061
ENSMUSG00000055632.19_12	chr2	+	2619	5	NIC	ENSMUSG00000055632.19	novel	2495	13	NA	NA	-215	0	intron_retention	FALSE	canonical	0	0	junction_3	9.54921462739214	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATGTCTTTGCTGAGT	NA	False	NA	NA	False	TATAAA	-19	NA	31344504	31350749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31344703_31344816_31344940_31345503_31345639_31347744_31349220_31350061
ENSMUSG00000055632.19_14	chr2	+	2642	5	NIC	ENSMUSG00000055632.19	novel	2495	13	NA	NA	3	-2	intron_retention	FALSE	canonical	2	13	junction_1	5.35607132140714	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGATGTCTTTGCTGA	NA	False	NA	NA	False	TATAAA	-17	NA	31344722	31350747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31344940_31345503_31345639_31347071_31347201_31347744_31349220_31350061
ENSMUSG00000055632.19_7	chr2	+	1605	2	NIC	ENSMUSG00000055632.19	novel	2495	13	NA	NA	3583	0	intron_retention	FALSE	canonical	3	25	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATGTCTTTGCTGAGT	NA	False	NA	NA	False	TATAAA	-19	NA	31348302	31350749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31349220_31350061
ENSMUSG00000055632.19_8	chr2	+	1723	7	NIC	ENSMUSG00000055632.19	novel	2879	14	NA	NA	-230	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_5	8.51795489278709	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTACTGACTTGAT	NA	False	NA	NA	False	TATAAA	-6	NA	31344489	31350736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31344703_31344816_31344940_31345503_31345639_31347071_31347201_31347744_31348066_31349092_31349220_31350061
ENSMUSG00000055632.19_9	chr2	+	1822	8	ISM	ENSMUSG00000055632.19	ENSMUST00000142448.8	2495	13	7777	0	-196	0	3prime_fragment	FALSE	canonical	2	7	junction_6	7.07106781186548	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATGTCTTTGCTGAGT	NA	False	NA	NA	False	TATAAA	-19	NA	31344523	31350749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_31344703_31344816_31344940_31345503_31345639_31347071_31347201_31347744_31348066_31348695_31348816_31349092_31349220_31350061
ENSMUSG00000055633.7_1	chr7	+	1050	2	FSM	ENSMUSG00000055633.7	ENSMUST00000069324.7	1096	2	43	3	43	-3	multi-exon	FALSE	canonical	3	32	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTTGGGTTCTTACTT	2962	False	NA	1	True	AATAAA	-12	NA	5054579	5056719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_5054714_5055803
ENSMUSG00000055633.7_2	chr7	+	2128	1	NIC	ENSMUSG00000055633.7	novel	1096	2	NA	NA	55	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTTGGGTTCTTACTT	2974	False	NA	1	True	AATAAA	-12	NA	5054591	5056719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_5054600_5056700
ENSMUSG00000055652.15_0	chr7	+	3354	3	FSM	ENSMUSG00000055652.15	ENSMUST00000171155.4	3403	3	48	1	-6	0	multi-exon	FALSE	canonical	3	36	junction_1	5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCTTTGGGTTCTGATT	NA	False	NA	16	True	AATAAA	-17	NA	75498105	75523878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_75498222_75515084_75516890_75522445
ENSMUSG00000055652.15_1	chr7	+	2257	2	ISM	ENSMUSG00000055652.15	ENSMUST00000171155.4	3403	3	60	6642	6	2	5prime_fragment	FALSE	canonical	3	36	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTGGCTGAAGGAGAAG	NA	False	NA	NA	False	AATAAA	-16	NA	75498117	75517237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_75498222_75515084
ENSMUSG00000055652.15_2	chr7	+	3364	3	FSM	ENSMUSG00000055652.15	ENSMUST00000092073.11	3385	3	21	0	-5	0	multi-exon	FALSE	canonical	3	14	junction_1	16	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCTTTGGGTTCTGATT	NA	False	NA	16	True	AATAAA	-17	NA	75498106	75523878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_75498233_75515084_75516890_75522445
ENSMUSG00000055652.15_3	chr7	+	2278	2	FSM	ENSMUSG00000055652.15	ENSMUST00000206019.2	2299	2	32	-11	9	11	multi-exon	FALSE	canonical	3	14	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAAGCAAGTGACTTATC	NA	False	NA	NA	False	AATAAA	-29	NA	75498120	75517250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_75498233_75515084
ENSMUSG00000055652.15_5	chr7	+	2732	2	ISM	ENSMUSG00000055652.15	ENSMUST00000092073.11	3385	3	17505	0	17402	0	3prime_fragment	FALSE	canonical	3	46	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCTTTGGGTTCTGATT	NA	False	NA	16	True	AATAAA	-17	NA	75515590	75523878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_75516890_75522445
ENSMUSG00000055653.14_0	chrX	-	2229	8	FSM	ENSMUSG00000055653.14	ENSMUST00000069360.14	2216	8	-30	17	-1	-17	multi-exon	FALSE	canonical	3	233	junction_6	17.9398086582293	484	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAACATTCAAATAAATGG	NA	False	NA	NA	False	NA	NA	NA	51702828	51361319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
ENSMUSG00000055660.10_0	chr17	-	2543	8	FSM	ENSMUSG00000055660.10	ENSMUST00000171284.3	2560	8	23	-6	23	6	multi-exon	FALSE	canonical	3	30	junction_6	27.8948462799061	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTGAGTCTCTTCCTTC	NA	False	NA	NA	False	AATATA	-22	NA	95057424	95034506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95055044_95055846_95056813
ENSMUSG00000055660.10_1	chr17	-	3666	9	NIC	ENSMUSG00000055660.10	novel	6640	9	NA	NA	34	1128	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	27.2488531868774	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGTTTTGGCTCATTTCC	NA	False	NA	-37	True	NA	NA	NA	95057413	95033384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95051359_95051423_95055044_95055846_95056864
ENSMUSG00000055660.10_19	chr17	-	2339	2	ISM	ENSMUSG00000055660.10	ENSMUST00000171284.3	2560	8	34	19594	34	20	5prime_fragment	FALSE	canonical	3	86	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATGAATCTACCTCATC	NA	False	NA	NA	False	TATAAA	-44	NA	95057413	95054106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_95055846_95056813
ENSMUSG00000055660.10_2	chr17	-	3726	9	NIC	ENSMUSG00000055660.10	novel	6640	9	NA	NA	25	1128	combination_of_known_junctions	FALSE	canonical	3	71	junction_6	15.2151240547029	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGTTTTGGCTCATTTCC	NA	False	NA	-37	True	NA	NA	NA	95057422	95033384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95051359_95051423_95055044_95055846_95056813
ENSMUSG00000055660.10_27	chr17	-	2325	2	FSM	ENSMUSG00000055660.10	ENSMUST00000234593.2	2224	2	-81	-20	-3	20	multi-exon	FALSE	canonical	3	30	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATGAATCTACCTCATC	NA	False	NA	NA	False	TATAAA	-44	NA	95057450	95054106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_95055846_95056864
ENSMUSG00000055660.10_3	chr17	-	2444	8	NIC	ENSMUSG00000055660.10	novel	2560	8	NA	NA	-14	-1	combination_of_known_junctions	FALSE	canonical	3	30	junction_6	35.9500787657733	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCTTTATAGTGAGTCTC	NA	False	NA	NA	False	AATATA	-15	NA	95057383	95034513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95055044_95055846_95056864
ENSMUSG00000055660.10_4	chr17	-	2723	1	ISM	ENSMUSG00000055660.10	ENSMUST00000234990.2	6640	9	24511	69	24511	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGATGAATTAAAGACTTG	NA	False	NA	-1	True	AATAAA	-15	NA	95032809	95030086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_95030100_95032800
ENSMUSG00000055660.10_5	chr17	-	5329	6	ISM	ENSMUSG00000055660.10	ENSMUST00000234990.2	6640	9	9345	83	9345	-83	3prime_fragment	FALSE	canonical	3	99	junction_1	6.65131565932636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATATTAAATTTACTGAT	NA	False	NA	-15	True	AATAAA	-1	NA	95047975	95030100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813
ENSMUSG00000055670.15_0	chr11	+	6207	36	ISM	ENSMUSG00000055670.15	ENSMUST00000069395.7	11150	55	-45	37627	-45	-29403	5prime_fragment	FALSE	canonical	1	2	junction_13	2.82986983186614	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTAAGTCCATGAATCTA	NA	False	NA	NA	False	NA	NA	NA	72687006	72780319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72687477_72708756_72708902_72712580_72712776_72714205_72714378_72714900_72715101_72716877_72717089_72721403_72721521_72722368_72722548_72728008_72728108_72734081_72734174_72735164_72735314_72739467_72739580_72741384_72741598_72742659_72742761_72743984_72744155_72746208_72746343_72749156_72749228_72750407_72750523_72754700_72754861_72755561_72755684_72755782_72755906_72756650_72756818_72756897_72756980_72757429_72757632_72758747_72758897_72760512_72760754_72763429_72763510_72764689_72764784_72765723_72766187_72767381_72767547_72771396_72771517_72772041_72772204_72775167_72775298_72777459_72777599_72778968_72779135_72779822
ENSMUSG00000055670.15_10	chr11	+	4160	12	ISM	ENSMUSG00000055670.15	ENSMUST00000207107.2	11306	55	112156	19	-3886	-19	3prime_fragment	FALSE	canonical	3	8	junction_3	4.29106317134762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAAAAGTACAACTCT	2973	False	NA	-10	True	AATATA	-14	NA	72799235	72817925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72799340_72800955_72801148_72801987_72802089_72803648_72803785_72803876_72804237_72806042_72806187_72807244_72807414_72807994_72808094_72808529_72808696_72813155_72813310_72813935_72814008_72815462
ENSMUSG00000055670.15_12	chr11	+	3428	6	ISM	ENSMUSG00000055670.15	ENSMUST00000152481.8	2800	9	3828	-1299	1181	-9	3prime_fragment	FALSE	canonical	3	11	junction_3	4.36348484585429	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAACTCTGTGTGGATTT	NA	False	NA	0	True	TATAAA	-4	NA	72806949	72817935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72807414_72807994_72808094_72808529_72808696_72813155_72813310_72813935_72814008_72815462
ENSMUSG00000055670.15_13	chr11	+	1267	1	ISM	ENSMUSG00000055670.15	ENSMUST00000069395.7	11150	55	129619	9	5002	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTCTGTGTGGATTTCT	NA	False	NA	2	True	TATAAA	-6	NA	72816670	72817937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72816700_72817900
ENSMUSG00000055670.15_15	chr11	+	11322	55	FSM	ENSMUSG00000055670.15	ENSMUST00000207107.2	11306	55	-44	28	-16	-28	multi-exon	FALSE	canonical	0	0	junction_41	4.3322252461051	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATTCTATATAAAAAAG	NA	False	NA	-19	True	AATATA	-5	NA	72687035	72817916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_72687477_72708756_72708902_72712580_72712776_72714205_72714378_72714900_72715101_72716877_72717089_72721403_72721521_72722368_72722548_72728008_72728108_72734081_72734174_72735164_72735314_72739467_72739580_72741384_72741598_72742659_72742761_72743984_72744155_72746208_72746343_72749156_72749228_72750407_72750523_72754700_72754861_72755561_72755684_72755782_72755906_72756650_72756818_72756897_72756980_72757429_72757632_72758747_72758897_72760512_72760754_72763429_72763510_72764689_72764784_72765723_72766187_72767381_72767547_72771396_72771517_72772041_72772204_72775167_72775298_72777459_72777599_72778968_72779135_72779822_72780086_72781917_72782052_72784087_72784239_72785971_72786112_72790329_72790608_72791457_72791633_72792152_72792286_72797657_72797858_72799219_72799340_72800955_72801148_72801987_72802089_72803648_72803785_72803876_72804237_72806042_72806187_72807244_72807414_72807994_72808094_72808529_72808696_72813155_72813310_72813935_72814008_72815462
ENSMUSG00000055670.15_6	chr11	+	5482	20	ISM	ENSMUSG00000055670.15	ENSMUST00000207107.2	11306	55	92901	29	-23141	-29	3prime_fragment	FALSE	canonical	0	0	junction_6	4.91309517057472	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAATTCTATATAAAAAA	NA	False	NA	-20	True	AATATA	-4	NA	72779980	72817915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72780086_72781917_72782052_72784087_72784239_72785971_72786112_72790329_72790608_72791457_72791633_72792152_72792286_72797657_72797858_72799219_72799340_72800955_72801148_72801987_72802089_72803648_72803785_72803876_72804237_72806042_72806187_72807244_72807414_72807994_72808094_72808529_72808696_72813155_72813310_72813935_72814008_72815462
ENSMUSG00000055670.15_9	chr11	+	4306	13	ISM	ENSMUSG00000055670.15	ENSMUST00000207107.2	11306	55	110652	15	-5390	-15	3prime_fragment	FALSE	canonical	3	8	junction_4	4.13319892254575	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGTACAACTCTGTGT	1469	False	NA	-6	True	AATATA	-18	NA	72797731	72817929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_72797858_72799219_72799340_72800955_72801148_72801987_72802089_72803648_72803785_72803876_72804237_72806042_72806187_72807244_72807414_72807994_72808094_72808529_72808696_72813155_72813310_72813935_72814008_72815462
ENSMUSG00000055675.7_0	chr8	+	2806	1	ISM	ENSMUSG00000055675.7	ENSMUST00000069399.7	6973	2	16299	3204	34	-2835	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCTCTGAACTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	15077323	15080129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_15077300_15080100
ENSMUSG00000055675.7_1	chr8	+	2638	1	ISM	ENSMUSG00000055675.7	ENSMUST00000069399.7	6973	2	19666	5	-1699	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAATGTTGCTGTGTTCTT	2969	False	NA	9	True	AATAAA	-25	NA	15080690	15083328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_15080700_15083300
ENSMUSG00000055681.15_0	chr8	+	1037	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	261	2	6	-2	multi-exon	FALSE	canonical	3	1246	junction_3	49.1055803823899	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTCTGCCTGATACCCAC	713	False	NA	24	True	AATAAA	-13	NA	70755428	70765638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
ENSMUSG00000055681.15_3	chr8	+	1799	9	NIC	ENSMUSG00000055681.15	novel	1300	10	NA	NA	7	-2	intron_retention	FALSE	canonical	3	1283	junction_8	36.3180395946698	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTCTGCCTGATACCCAC	714	False	NA	24	True	AATAAA	-13	NA	70755429	70765638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70755583_70757283_70757347_70758284_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
ENSMUSG00000055692.22_10	chr16	+	1399	10	FSM	ENSMUSG00000055692.22	ENSMUST00000164950.11	1631	10	227	5	-5	-1	multi-exon	TRUE	canonical	3	122	junction_4	58.6725586266908	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATAGGTGTGTGGGGTT	NA	False	NA	33	True	AATAAA	-18	NA	17094167	17096520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055692.22_13	chr16	+	1631	8	FSM	ENSMUSG00000055692.22	ENSMUST00000232092.2	1627	8	-5	1	-5	-1	multi-exon	FALSE	canonical	3	181	junction_2	39.2189042297154	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGTGTGTGGGGTTTCAT	NA	False	NA	37	True	AATAAA	-22	NA	17094167	17096524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17094333_17094497_17094622_17094700_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055692.22_18	chr16	+	1951	5	NIC	ENSMUSG00000055692.22	novel	1721	7	NA	NA	-11	-1	intron_retention	FALSE	canonical	3	265	junction_3	5.35607132140714	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGTGTGTGGGGTTTCAT	NA	False	NA	37	True	AATAAA	-22	NA	17094161	17096524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_17094333_17094497_17095115_17095205_17095457_17095532_17095756_17095835
ENSMUSG00000055692.22_22	chr16	+	1552	9	NIC	ENSMUSG00000055692.22	novel	1631	10	NA	NA	0	-1	intron_retention	FALSE	canonical	3	132	junction_3	51.3997811279387	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGTGTGTGGGGTTTCAT	NA	False	NA	37	True	AATAAA	-22	NA	17094172	17096524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055692.22_37	chr16	+	1819	6	NIC	ENSMUSG00000055692.22	novel	1627	8	NA	NA	-5	-1	intron_retention	FALSE	canonical	3	230	junction_3	17.5658760100372	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGTGTGTGGGGTTTCAT	NA	False	NA	37	True	AATAAA	-22	NA	17094167	17096524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_17094333_17094497_17095115_17095205_17095266_17095391_17095457_17095532_17095756_17095835
ENSMUSG00000055692.22_38	chr16	+	1696	7	NIC	ENSMUSG00000055692.22	novel	1627	8	NA	NA	-1	2	intron_retention	FALSE	canonical	3	181	junction_2	34.7754702819866	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGTGTGGGGTTTCA	NA	False	NA	36	True	AATAAA	-21	NA	17094210	17096523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_17094333_17094497_17094622_17094700_17095115_17095205_17095266_17095391_17095457_17095532_17095756_17095835
ENSMUSG00000055692.22_9	chr16	+	1709	7	NIC	ENSMUSG00000055692.22	novel	1627	8	NA	NA	-5	2	intron_retention	FALSE	canonical	3	186	junction_5	33.1331488928468	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGTGTGGGGTTTCA	NA	False	NA	36	True	AATAAA	-21	NA	17094167	17096523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_17094333_17094497_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055707.14_1	chr8	-	3006	3	FSM	ENSMUSG00000055707.14	ENSMUST00000066597.13	2991	3	-19	4	-19	-4	multi-exon	FALSE	canonical	3	54	junction_2	2	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGGATGGAGCAGACCTG	NA	False	NA	-22	True	AATAAA	-12	NA	70929574	70902921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70905670_70908115_70908299_70929499
ENSMUSG00000055707.14_2	chr8	-	5489	2	NIC	ENSMUSG00000055707.14	novel	2991	3	NA	NA	-9	-2	intron_retention	FALSE	canonical	3	54	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATGGAGCAGACCTGTG	NA	False	NA	-20	True	AATAAA	-14	NA	70929609	70902919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70908299_70929499
ENSMUSG00000055707.14_3	chr8	-	2070	1	ISM	ENSMUSG00000055707.14	ENSMUST00000209415.2	2919	3	24608	54	23556	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAGGATGGAGCAGACCT	NA	False	NA	-23	True	AATAAA	-11	NA	70904992	70902922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_70902900_70905000
ENSMUSG00000055707.14_6	chr8	-	2845	2	FSM	ENSMUSG00000055707.14	ENSMUST00000166976.3	2734	2	24	-135	5	-2	multi-exon	FALSE	canonical	3	8	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATGGAGCAGACCTGTG	NA	False	NA	-20	True	AATAAA	-14	NA	70929594	70902919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70905670_70929499
ENSMUSG00000055707.14_9	chr8	-	3135	4	NNC	ENSMUSG00000055707.14	novel	2991	3	NA	NA	-17	-3	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	22.4251842554055	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGATGGAGCAGACCTGT	NA	False	NA	-21	True	AATAAA	-13	NA	70929572	70902920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_70905670_70908115_70908299_70928456_70928587_70929499
ENSMUSG00000055717.14_0	chr14	+	2868	7	FSM	ENSMUSG00000055717.14	ENSMUST00000069443.14	2863	7	-10	5	-10	-5	multi-exon	FALSE	canonical	3	39	junction_2	8.46069343099804	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATATCAGCTCACGCAT	NA	False	NA	22	True	AATAAA	-12	NA	103887653	103942338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_103888345_103894368_103894509_103923104_103923255_103925497_103925840_103932603_103932760_103939952_103940275_103941271
ENSMUSG00000055717.14_1	chr14	+	3011	8	FSM	ENSMUSG00000055717.14	ENSMUST00000160805.8	1998	8	-421	-592	-3	-5	multi-exon	FALSE	canonical	3	18	junction_2	16.4812818998167	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATATCAGCTCACGCAT	NA	False	NA	22	True	AATAAA	-12	NA	103887660	103942338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_103888345_103894368_103894509_103921669_103921820_103923104_103923255_103925497_103925840_103932603_103932760_103939952_103940275_103941271
ENSMUSG00000055717.14_7	chr14	+	1485	3	NNC	ENSMUSG00000055717.14	novel	2863	7	NA	NA	35052	-4	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	23.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATATCAGCTCACGCATG	NA	False	NA	23	True	AATAAA	-13	NA	103936985	103942339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_103937081_103939952_103940275_103941271
ENSMUSG00000055720.11_0	chr9	+	1421	12	NIC	ENSMUSG00000055720.11	novel	1319	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	95.5400482857649	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_57818291_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055720.11_1	chr9	+	1311	11	FSM	ENSMUSG00000055720.11	ENSMUST00000216925.2	1319	11	7	1	0	1	multi-exon	FALSE	canonical	3	39	junction_1	82.3315856764583	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCGTGTCCAGTGCTT	NA	False	NA	15	True	AATATA	-16	NA	57818268	57837250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57818291_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055720.11_17	chr9	+	1400	11	NIC	ENSMUSG00000055720.11	novel	880	9	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	54.7233039938197	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818998	57837251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055720.11_3	chr9	+	1428	12	NNC	ENSMUSG00000055720.11	novel	1319	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	96.9895623591094	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_57818291_57818992_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055720.11_4	chr9	+	1355	11	FSM	ENSMUSG00000055720.11	ENSMUST00000163329.2	1364	11	8	1	8	1	multi-exon	FALSE	canonical	3	118	junction_1	59.3140792729686	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCGTGTCCAGTGCTT	NA	False	NA	15	True	AATATA	-16	NA	57818276	57837250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57818343_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055720.11_5	chr9	+	1456	12	NIC	ENSMUSG00000055720.11	novel	1364	11	NA	NA	-6	1	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	84.997131696865	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCGTGTCCAGTGCTT	NA	False	NA	15	True	AATATA	-16	NA	57818284	57837250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_57818343_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055720.11_8	chr9	+	1442	11	FSM	ENSMUSG00000055720.11	ENSMUST00000216841.2	1426	11	-16	0	10	0	multi-exon	FALSE	canonical	3	19	junction_1	88.2161549830869	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCGTGTCCAGTGCT	NA	False	NA	14	True	AATATA	-15	NA	57818300	57837249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57818455_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055723.7_0	chr7	-	2262	6	FSM	ENSMUSG00000055723.7	ENSMUST00000069449.7	2275	6	7	6	7	-3	multi-exon	FALSE	canonical	3	204	junction_1	27.4779911929529	274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGACGACGCTTGACGGC	NA	False	NA	-7	True	ATTAAA	-15	NA	113717009	113646022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_113647487_113649535_113649655_113657774_113657884_113658161_113658265_113659566_113659655_113716630
ENSMUSG00000055725.12_0	chr5	-	2281	7	FSM	ENSMUSG00000055725.12	ENSMUST00000112969.10	2257	7	-28	4	-5	-4	multi-exon	TRUE	canonical	3	15	junction_1	65.5709962983296	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCGTCTTCATCCTCTTG	NA	False	NA	NA	False	ATTAAA	-17	NA	97259460	97234842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_97236024_97243770_97243920_97245337_97245429_97247404_97247603_97251218_97251375_97256024_97256188_97259117
ENSMUSG00000055725.12_2	chr5	-	3737	6	ISM	ENSMUSG00000055725.12	ENSMUST00000112969.10	2257	7	-28	6295	-5	2657	5prime_fragment	FALSE	canonical	3	151	junction_3	20.8096131631513	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAATGTGTGCTGCCTGC	NA	False	NA	NA	False	AATAAA	-9	NA	97259460	97241133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_97243920_97245337_97245429_97247404_97247603_97251218_97251375_97256024_97256188_97259117
ENSMUSG00000055725.12_4	chr5	-	3666	6	NIC	ENSMUSG00000055725.12	novel	1375	7	NA	NA	3	2657	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	71.4047617459788	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAATGTGTGCTGCCTGC	NA	False	NA	NA	False	AATAAA	-9	NA	97259452	97241133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_97243920_97245337_97245429_97247404_97247540_97251218_97251375_97256024_97256188_97259117
ENSMUSG00000055733.7_0	chrX	-	2844	1	FSM	ENSMUSG00000055733.7	ENSMUST00000079490.6	2837	1	-6	-1	-6	1	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGACTTACCATTTTCTT	NA	False	NA	NA	False	AATAAA	-12	NA	121307104	121304260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_121304300_121307100
ENSMUSG00000055737.13_0	chr15	-	4166	11	FSM	ENSMUSG00000055737.13	ENSMUST00000069451.11	4175	11	7	2	7	-2	multi-exon	FALSE	canonical	0	0	junction_1	1.02469507659596	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTGATCTTATGTTTC	NA	False	NA	NA	False	AATAAA	-13	NA	3612705	3347243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_3350205_3350470_3350541_3355379_3355471_3357455_3357625_3362828_3363008_3370400_3370574_3375990_3376015_3376953_3377084_3418129_3418196_3487411_3487491_3612481
ENSMUSG00000055737.13_1	chr15	-	2561	1	ISM	ENSMUSG00000055737.13	ENSMUST00000069451.11	4175	11	262909	1	151323	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTGATCTTATGTTTCT	NA	False	NA	NA	False	AATAAA	-14	NA	3349803	3347242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_3347200_3349800
ENSMUSG00000055745.5_0	chr15	-	4208	1	FSM	ENSMUSG00000055745.5	ENSMUST00000069476.5	4426	1	218	0	218	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCGTATCTGCTATA	5245	False	NA	-17	True	ATTAAA	-14	NA	84441806	84437598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_84437600_84441800
ENSMUSG00000055746.10_0	chrX	-	1644	4	FSM	ENSMUSG00000055746.10	ENSMUST00000069477.8	1685	4	-14	55	-14	-55	multi-exon	FALSE	canonical	2	9	junction_2	9.56846672960488	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTAGTCTCTTGTT	NA	False	NA	NA	False	AAAAAG	-27	NA	153816302	153810251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_153811648_153812583_153812673_153815451_153815557_153816248
ENSMUSG00000055746.10_1	chrX	-	1576	3	NIC	ENSMUSG00000055746.10	novel	1685	4	NA	NA	-22	-26	combination_of_known_splicesites	FALSE	canonical	3	5	junction_2	13	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAAAATTCAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	153816310	153810222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_153811648_153812583_153812673_153816248
ENSMUSG00000055760.13_0	chr17	+	1063	3	FSM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	39	32	39	-32	multi-exon	FALSE	canonical	3	317	junction_1	34	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAAAAATCCGTTTCGG	NA	False	NA	7	True	AATAAA	-26	NA	80531908	80535894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_80532100_80533049_80533194_80535166
ENSMUSG00000055760.13_11	chr17	+	621	1	ISM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	3409	27	3409	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATCCGTTTCGGGTTCT	NA	False	NA	12	True	AATAAA	-31	NA	80535278	80535899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_80535300_80535900
ENSMUSG00000055760.13_2	chr17	+	1065	3	NNC	ENSMUSG00000055760.13	novel	1134	3	NA	NA	41	-32	at_least_one_novel_splicesite	FALSE	canonical	3	145	junction_1	120	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAAAAATCCGTTTCGG	NA	False	NA	7	True	AATAAA	-26	NA	80531910	80535894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_80532104_80533049_80533194_80535166
ENSMUSG00000055760.13_3	chr17	+	823	2	ISM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	1233	28	1233	-28	3prime_fragment	FALSE	canonical	3	385	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAATCCGTTTCGGGTTC	NA	False	NA	11	True	AATAAA	-30	NA	80533102	80535898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_80533194_80535166
ENSMUSG00000055762.17_1	chr15	-	977	8	FSM	ENSMUSG00000055762.17	ENSMUST00000154584.9	2312	8	51	1284	2	-1	multi-exon	FALSE	canonical	3	2715	junction_5	241.1927842695	1139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGCCTCTTGTGTTACT	NA	False	NA	-7	True	ATTAAA	-15	NA	75781153	75767337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
ENSMUSG00000055762.17_2	chr15	-	1034	9	NIC	ENSMUSG00000055762.17	novel	2842	9	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	78	junction_5	1349.65903101487	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGCCTCTTGTGTTACT	NA	False	NA	-7	True	ATTAAA	-15	NA	75781153	75767337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772539_75772612_75772980_75773105_75781093
ENSMUSG00000055762.17_3	chr15	-	905	7	FSM	ENSMUSG00000055762.17	ENSMUST00000109972.9	1624	7	30	689	2	-1	multi-exon	FALSE	canonical	3	464	junction_5	1042.33482571048	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGCCTCTTGTGTTACT	NA	False	NA	-7	True	ATTAAA	-15	NA	75781153	75767337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773105_75781093
ENSMUSG00000055762.17_4	chr15	-	974	8	NIC	ENSMUSG00000055762.17	novel	2312	8	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	250	junction_7	1032.38266121806	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGCCTCTTGTGTTACT	NA	False	NA	-7	True	ATTAAA	-15	NA	75781153	75767337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773102_75781093
ENSMUSG00000055780.11_1	chrX	-	6920	8	FSM	ENSMUSG00000055780.11	ENSMUST00000069509.4	4120	8	62	-2862	62	2862	multi-exon	FALSE	canonical	3	16	junction_1	4.17475405605784	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATATTAAAAATTATACC	NA	False	NA	NA	False	NA	NA	NA	50889959	50839973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_50846351_50854031_50854113_50882224_50882281_50885803_50885850_50886599_50886704_50887371_50887431_50889689_50889806_50889878
ENSMUSG00000055780.11_3	chrX	-	6881	7	ISM	ENSMUSG00000055780.11	ENSMUST00000069509.4	4120	8	170	-2858	170	2858	3prime_fragment	FALSE	canonical	3	16	junction_1	4.50924975282289	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAATATTAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	50889851	50839977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_50846351_50854031_50854113_50882224_50882281_50885803_50885850_50886599_50886704_50887371_50887431_50889689
ENSMUSG00000055799.14_0	chr6	-	3041	13	FSM	ENSMUSG00000055799.14	ENSMUST00000114053.9	1888	13	-261	-892	41	-2	multi-exon	FALSE	canonical	3	158	junction_8	90.8812946772999	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACCGTCTCTGGATGTTT	4864	False	NA	-10	True	AATAAA	-12	NA	72766196	72603362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909_72609994_72610198_72610302_72611082_72611216_72625783_72625826_72626102_72626187_72765193_72765322_72765544_72765609_72765692
ENSMUSG00000055799.14_2	chr6	-	3000	12	FSM	ENSMUSG00000055799.14	ENSMUST00000069536.12	3042	12	40	2	40	-2	multi-exon	FALSE	canonical	3	205	junction_8	63.9987086646582	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACCGTCTCTGGATGTTT	4863	False	NA	-10	True	AATAAA	-12	NA	72766197	72603362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909_72609994_72610198_72610302_72611082_72611216_72626102_72626187_72765193_72765322_72765544_72765609_72765692
ENSMUSG00000055805.16_0	chr11	+	3874	27	NIC	ENSMUSG00000055805.16	novel	3824	27	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_15	8.099236577363	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGACGTGCGTCGGCTCG	4989	False	NA	17	True	AATAAA	-10	NA	103061873	103089721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_103062268_103070341_103070426_103071707_103071822_103072534_103072609_103072911_103072996_103073467_103073594_103073841_103073860_103076446_103076556_103077236_103077314_103077438_103077533_103080751_103080827_103081121_103081233_103082840_103082991_103083504_103083607_103083775_103084029_103084276_103084562_103084753_103084879_103085451_103085655_103086084_103086320_103086435_103086505_103087086_103087168_103087241_103087372_103087510_103087675_103087903_103088006_103088140_103088222_103088483_103088605_103089308
ENSMUSG00000055805.16_1	chr11	+	3924	26	FSM	ENSMUSG00000055805.16	ENSMUST00000042286.12	3806	26	-124	6	-124	0	multi-exon	FALSE	canonical	0	0	junction_6	9.20208671986958	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGACGTGCGTCGGCTCG	4924	False	NA	17	True	AATAAA	-10	NA	103061808	103089721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_103062268_103070341_103070426_103071707_103071822_103072534_103072609_103072911_103072996_103073467_103073594_103076446_103076556_103077236_103077314_103077438_103077533_103080751_103080827_103081121_103081233_103082840_103082991_103083504_103083607_103083775_103084029_103084273_103084562_103084753_103084879_103085451_103085655_103086084_103086320_103086435_103086505_103087086_103087168_103087241_103087372_103087510_103087675_103087903_103088006_103088140_103088222_103088483_103088605_103089308
ENSMUSG00000055805.16_2	chr11	+	3933	27	NIC	ENSMUSG00000055805.16	novel	3824	27	NA	NA	-145	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	8.87220245099045	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGACGTGCGTCGGCTCG	4903	False	NA	17	True	AATAAA	-10	NA	103061787	103089721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_103062268_103070341_103070426_103071707_103071792_103072534_103072609_103072911_103072996_103073467_103073594_103073841_103073860_103076446_103076556_103077236_103077314_103077438_103077533_103080751_103080827_103081121_103081233_103082840_103082991_103083504_103083607_103083775_103084029_103084273_103084562_103084753_103084879_103085451_103085655_103086084_103086320_103086435_103086505_103087086_103087168_103087241_103087372_103087510_103087675_103087903_103088006_103088140_103088222_103088483_103088605_103089308
ENSMUSG00000055805.16_3	chr11	+	3957	27	FSM	ENSMUSG00000055805.16	ENSMUST00000218163.2	3824	27	-139	6	-139	0	multi-exon	FALSE	canonical	3	15	junction_15	7.11320132824136	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGACGTGCGTCGGCTCG	4909	False	NA	17	True	AATAAA	-10	NA	103061793	103089721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_103062268_103070341_103070426_103071707_103071822_103072534_103072609_103072911_103072996_103073467_103073594_103073841_103073860_103076446_103076556_103077236_103077314_103077438_103077533_103080751_103080827_103081121_103081233_103082840_103082991_103083504_103083607_103083775_103084029_103084273_103084562_103084753_103084879_103085451_103085655_103086084_103086320_103086435_103086505_103087086_103087168_103087241_103087372_103087510_103087675_103087903_103088006_103088140_103088222_103088483_103088605_103089308
ENSMUSG00000055805.16_6	chr11	+	3935	26	NIC	ENSMUSG00000055805.16	novel	3693	27	NA	NA	-138	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	9.98430768756652	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGACGTGCGTCGGCTCG	4910	False	NA	17	True	AATAAA	-10	NA	103061794	103089721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_103062268_103070341_103070426_103071707_103071822_103072534_103072609_103072911_103072996_103073467_103073594_103076446_103076556_103077236_103077314_103077438_103077533_103080751_103080827_103081121_103081233_103082840_103082991_103083504_103083607_103083775_103084029_103084276_103084562_103084753_103084879_103085451_103085655_103086084_103086320_103086435_103086505_103087086_103087168_103087241_103087372_103087510_103087675_103087903_103088006_103088140_103088222_103088483_103088605_103089308
ENSMUSG00000055809.8_4	chr7	-	2201	12	FSM	ENSMUSG00000055809.8	ENSMUST00000094897.5	2224	12	1	22	1	-22	multi-exon	FALSE	canonical	2	8	junction_9	6.85022772137618	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTGTGTGTCCTGTCCT	NA	False	NA	-21	True	AATAAA	-13	NA	4535451	4525953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4526859_4526936_4527012_4527142_4527255_4529412_4529531_4529865_4529989_4530092_4530219_4530440_4530624_4530951_4531110_4533772_4533867_4534736_4534880_4535185_4535275_4535376
ENSMUSG00000055809.8_7	chr7	-	1664	8	ISM	ENSMUSG00000055809.8	ENSMUST00000094897.5	2224	12	4479	22	4479	-22	3prime_fragment	FALSE	canonical	3	15	junction_7	5.68205194324324	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTGTGTGTCCTGTCCT	1471	False	NA	-21	True	AATAAA	-13	NA	4530973	4525953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_4526859_4526936_4527012_4527142_4527255_4529412_4529531_4529865_4529989_4530092_4530219_4530440_4530624_4530951
ENSMUSG00000055817.19_0	chr17	+	1692	14	FSM	ENSMUSG00000055817.19	ENSMUST00000112350.8	1723	14	32	-1	4	1	multi-exon	FALSE	canonical	3	649	junction_11	147.297388673592	687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTTTGTTTTTTTTTT	NA	False	NA	11	True	AATAAA	-16	NA	84013623	84100303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
ENSMUSG00000055817.19_5	chr17	+	1681	14	FSM	ENSMUSG00000055817.19	ENSMUST00000112349.9	1728	14	46	1	18	1	multi-exon	FALSE	canonical	3	262	junction_11	233.064406873892	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTTTGTTTTTTTTTT	NA	False	NA	11	True	AATAAA	-16	NA	84013637	84100303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096346_84096472_84099081_84099231_84099970
ENSMUSG00000055817.19_9	chr17	+	2062	17	NIC	ENSMUSG00000055817.19	novel	2087	17	NA	NA	21	-7	combination_of_known_junctions	FALSE	canonical	3	32	junction_15	404.890412449776	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTCTGTAGGTGTTTAT	NA	False	NA	NA	False	AATAAA	-11	NA	84013640	84122327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970_84100194_84107478_84107566_84111879_84112027_84122064
ENSMUSG00000055826.6_0	chr7	-	497	1	FSM	ENSMUSG00000055826.6	ENSMUST00000069562.6	855	1	358	0	358	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGAGCGGGGCGTGGCTG	NA	False	NA	NA	False	AATAAA	-13	NA	24033003	24032506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24032500_24033000
ENSMUSG00000055833.15_0	chr1	-	1762	1	ISM	ENSMUSG00000055833.15	ENSMUST00000139827.8	4354	5	11680	6	3290	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGAGGGATGTGATAATT	NA	False	NA	NA	False	AATAAA	-18	NA	191627951	191626189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_191626200_191628000
ENSMUSG00000055835.11_0	chr8	+	1850	4	FSM	ENSMUSG00000055835.11	ENSMUST00000077791.8	1811	4	-42	3	-16	0	multi-exon	FALSE	canonical	3	44	junction_2	17.3076733143296	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGAGTGTTTTTGGCTT	NA	False	NA	10	True	AATAGA	-17	NA	112370095	112397640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_112370245_112385017_112385074_112392709_112392837_112396122
ENSMUSG00000055835.11_1	chr8	+	1861	4	FSM	ENSMUSG00000055835.11	ENSMUST00000212072.2	1930	4	62	7	-17	-7	multi-exon	FALSE	canonical	1	5	junction_2	33.7671766990109	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTTCCATGAGTGTTT	NA	False	NA	3	True	AATAGA	-10	NA	112370094	112397633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_112370245_112385017_112385074_112392692_112392837_112396122
ENSMUSG00000055835.11_15	chr8	+	722	1	ISM	ENSMUSG00000055835.11	ENSMUST00000212072.2	1930	4	26767	119	26631	-119	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGATTATACTGAAA	NA	False	NA	NA	False	NA	NA	NA	112396799	112397521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_112396800_112397500
ENSMUSG00000055835.11_4	chr8	+	1755	4	FSM	ENSMUSG00000055835.11	ENSMUST00000211926.2	1409	4	-20	-326	11	0	multi-exon	FALSE	canonical	3	27	junction_2	24.1430919496424	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGAGTGTTTTTGGCTT	NA	False	NA	10	True	AATAGA	-17	NA	112370148	112397640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_112370245_112385017_112385074_112392751_112392837_112396122
ENSMUSG00000055835.11_6	chr8	+	1561	3	NIC	ENSMUSG00000055835.11	novel	1930	4	NA	NA	1	-119	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	43	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGATTATACTGAAA	NA	False	NA	NA	False	NA	NA	NA	112370138	112397521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_112370245_112385017_112385074_112396122
ENSMUSG00000055835.11_9	chr8	+	4038	2	ISM	ENSMUSG00000055835.11	ENSMUST00000077791.8	1811	4	20181	1	20150	-1	3prime_fragment	FALSE	canonical	3	60	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGAGTGTTTTTGGCTTTT	NA	False	NA	12	True	AATAGA	-19	NA	112390318	112397642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_112392837_112396122
ENSMUSG00000055839.7_0	chr17	-	451	4	FSM	ENSMUSG00000055839.7	ENSMUST00000069579.7	537	4	14	72	-8	-1	multi-exon	FALSE	canonical	3	7596	junction_3	2024.23060829431	1580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGATTGACTTTTCTGTT	NA	False	NA	-37	True	AATAAA	-17	NA	24048096	24043783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24043954_24046441_24046548_24047817_24047953_24048056
ENSMUSG00000055839.7_2	chr17	-	412	3	FSM	ENSMUSG00000055839.7	ENSMUST00000232702.2	581	3	104	65	-104	-1	multi-exon	FALSE	canonical	3	11428	junction_1	404.5	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGATTGACTTTTCTGTT	NA	False	NA	-37	True	AATAAA	-17	NA	24047953	24043783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24043954_24046441_24046548_24047817
ENSMUSG00000055850.13_1	chr6	-	1384	5	FSM	ENSMUSG00000055850.13	ENSMUST00000069580.12	1434	5	41	9	-1	-9	multi-exon	FALSE	canonical	3	875	junction_2	66.4266512779321	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAAATACTCGTGTGGTT	8449	False	NA	NA	False	TATAAA	-6	NA	72339374	72336705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339223
ENSMUSG00000055850.13_4	chr6	-	1229	4	ISM	ENSMUSG00000055850.13	ENSMUST00000069580.12	1434	5	900	6	-136	-6	3prime_fragment	FALSE	canonical	3	875	junction_2	70.8723421998235	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATACTCGTGTGGTTCTG	5	True	NA	NA	False	TATAAA	-9	NA	72338515	72336702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394
ENSMUSG00000055850.13_6	chr6	-	1353	5	NIC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	73	junction_4	391.378652969219	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATACTCGTGTGGTTCTG	8448	False	NA	NA	False	TATAAA	-9	NA	72339375	72336702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339258
ENSMUSG00000055862.8_11	chr10	+	1584	8	ISM	ENSMUSG00000055862.8	ENSMUST00000218184.2	1196	10	225	0	-73	0	intron_retention	FALSE	canonical	2	9	junction_4	6.01019541941789	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGGAACAATTCTTT	NA	False	NA	2	True	ATTAAA	-15	NA	80538484	80541207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80538794_80538882_80538964_80539042_80539115_80539563_80539591_80539686_80539763_80539872_80539921_80540013_80540029_80540251
ENSMUSG00000055862.8_2	chr10	+	1640	7	FSM	ENSMUSG00000055862.8	ENSMUST00000217823.2	1564	7	-76	0	-33	0	multi-exon	FALSE	canonical	3	12	junction_6	5.08811250749125	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGGAACAATTCTTT	NA	False	NA	2	True	ATTAAA	-15	NA	80538524	80541207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80538794_80538882_80538964_80539042_80539115_80539563_80539763_80539872_80539921_80540013_80540029_80540251
ENSMUSG00000055862.8_5	chr10	+	918	10	FSM	ENSMUSG00000055862.8	ENSMUST00000218184.2	1196	10	278	0	-20	0	multi-exon	FALSE	canonical	2	4	junction_9	7.62711213410245	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGGAACAATTCTTT	NA	False	NA	2	True	ATTAAA	-15	NA	80538537	80541207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80538794_80538882_80538964_80539042_80539115_80539563_80539591_80539686_80539763_80539872_80539921_80540013_80540029_80540251_80540270_80540532_80540548_80540897
ENSMUSG00000055884.9_0	chr12	+	6367	23	FSM	ENSMUSG00000055884.9	ENSMUST00000058889.5	7775	23	-3	1411	0	81	multi-exon	TRUE	canonical	3	55	junction_4	33.1504521739726	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGTTTGGTCAGAGTGAT	9280	False	NA	3	True	AATAAA	-14	NA	65122376	65177421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426_65140544_65141644_65141732_65142494_65142680_65144075_65144283_65146021_65146227_65148334_65148487_65149335_65149492_65151801_65153666_65160547_65160634_65160729_65160793_65163106_65163239_65165057_65165215_65167250_65167358_65168303_65168865_65171587_65171961_65173288_65173581_65177048
ENSMUSG00000055884.9_38	chr12	+	4009	10	ISM	ENSMUSG00000055884.9	ENSMUST00000058889.5	7775	23	30494	338	-473	-338	3prime_fragment	FALSE	canonical	3	99	junction_1	16.649620912898	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGTAGTCCAATATTTAA	NA	False	NA	-2	True	AATAAA	-11	NA	65152873	65178494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_65153666_65160547_65160634_65160729_65160793_65163106_65163239_65165057_65165215_65167250_65167358_65168303_65168865_65171587_65171961_65173288_65173581_65177048
ENSMUSG00000055884.9_49	chr12	+	1817	6	ISM	ENSMUSG00000055884.9	ENSMUST00000058889.5	7775	23	42724	1411	98	81	3prime_fragment	FALSE	canonical	3	115	junction_2	14.3303872941383	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGTTTGGTCAGAGTGAT	NA	False	NA	3	True	AATAAA	-14	NA	65165103	65177421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_65165215_65167250_65167358_65168303_65168865_65171587_65171961_65173288_65173581_65177048
ENSMUSG00000055884.9_51	chr12	+	2476	4	ISM	ENSMUSG00000055884.9	ENSMUST00000058889.5	7775	23	46125	333	-3127	-333	3prime_fragment	FALSE	canonical	3	130	junction_2	10.6562449087639	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTCCAATATTTAACATGA	NA	False	NA	3	True	AATAAA	-16	NA	65168504	65178499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_65168865_65171587_65171961_65173288_65173581_65177048
ENSMUSG00000055884.9_54	chr12	+	1139	1	ISM	ENSMUSG00000055884.9	ENSMUST00000058889.5	7775	23	55086	228	5834	-228	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTTCTCCAGTCCCAGC	NA	False	NA	10	True	AATAAA	-22	NA	65177465	65178604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_65177500_65178600
ENSMUSG00000055897.14_0	chr2	-	3572	4	ISM	ENSMUSG00000055897.14	ENSMUST00000154908.2	2399	5	796	-1856	245	175	intron_retention	FALSE	canonical	3	15	junction_3	3.74165738677394	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGAAGGAGATGCTTTCT	4415	False	NA	NA	False	TTTAAA	-25	NA	173432310	173426522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_173428909_173429625_173429715_173430959_173431044_173431297
ENSMUSG00000055897.14_10	chr2	-	794	1	NIC	ENSMUSG00000055897.14	novel	2767	19	NA	NA	5066	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTAACAGTGTACTCAT	9236	False	NA	0	True	TATAAA	-15	NA	173427489	173426695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_173426700_173427500
ENSMUSG00000055897.14_14	chr2	-	3506	11	NIC	ENSMUSG00000055897.14	novel	4552	13	NA	NA	3	180	combination_of_known_splicesites	FALSE	canonical	2	2	junction_4	7.4222638056054	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGAGATGCTTTCTCTTGC	NA	False	NA	NA	False	TTTAAA	-30	NA	173501325	173426517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_173428909_173429625_173429715_173430959_173431044_173431297_173431468_173433909_173434015_173434594_173434808_173438832_173438981_173450525_173450673_173457275_173457370_173501115_173501161_173501305
ENSMUSG00000055897.14_22	chr2	-	3192	5	NIC	ENSMUSG00000055897.14	novel	2399	5	NA	NA	175	-200	intron_retention	FALSE	canonical	2	3	junction_3	7.69740215917033	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTGCATGTGTATGTT	4345	False	NA	NA	False	TTTAAA	-22	NA	173432380	173426897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_173428909_173429625_173429715_173430959_173431082_173431297_173431468_173431580
ENSMUSG00000055897.14_4	chr2	-	4412	11	NIC	ENSMUSG00000055897.14	novel	4552	13	NA	NA	5	173	intron_retention	FALSE	canonical	3	8	junction_5	6.36867333123626	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTGAAGGAGATGCTTT	NA	False	NA	NA	False	TTTAAA	-23	NA	173501323	173426524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_173428909_173429625_173429715_173430959_173431044_173431297_173431468_173431580_173432590_173433909_173434015_173434594_173434808_173438832_173438981_173450525_173450673_173501115_173501161_173501305
ENSMUSG00000055897.14_44	chr2	-	88	1	ISM	ENSMUSG00000055897.14	ENSMUST00000151763.8	5637	16	63346	15668	-4880	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAAATTGTCTCTTTCT	NA	False	NA	NA	False	ATTAAA	-9	NA	173437986	173437898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_173437900_173438000
ENSMUSG00000055897.14_5	chr2	-	3333	5	FSM	ENSMUSG00000055897.14	ENSMUST00000154908.2	2399	5	749	-1683	198	2	multi-exon	FALSE	canonical	3	13	junction_4	4.15331193145904	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTAACAGTGTACTCAT	4368	False	NA	0	True	TATAAA	-15	NA	173432357	173426695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_173428909_173429625_173429715_173430959_173431044_173431297_173431468_173431580
ENSMUSG00000055900.15_0	chr4	-	1727	4	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	-5	88	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	27.6204433144888	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTTTTAGCACTTCTG	NA	False	NA	-20	True	AATAAA	-13	NA	116413138	116408741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_116409420_116410082_116410927_116411964_116412101_116413069
ENSMUSG00000055900.15_4	chr4	-	1793	3	FSM	ENSMUSG00000055900.15	ENSMUST00000069674.6	974	3	5	-824	5	-226	multi-exon	FALSE	canonical	3	51	junction_2	6.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATTATTTCA	NA	False	NA	NA	False	NA	NA	NA	116413127	116409327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116410927_116411964_116412101_116413069
ENSMUSG00000055912.9_0	chr6	+	1510	8	FSM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	31	5	4	-5	multi-exon	FALSE	canonical	3	88	junction_1	17.1583263538524	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCTGCAGTGTGTTCTGG	NA	False	NA	5	True	ATTAAA	-16	NA	72332460	72336740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_72332528_72333113_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335419_72335561_72335740_72335988
ENSMUSG00000055912.9_1	chr6	+	1458	7	NIC	ENSMUSG00000055912.9	novel	1546	8	NA	NA	8	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	41.217579852399	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCTGCAGTGTGTTCTGG	NA	False	NA	5	True	ATTAAA	-16	NA	72332464	72336740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_72332528_72333113_72333296_72334032_72334120_72334931_72335000_72335290_72335419_72335561_72335740_72335988
ENSMUSG00000055912.9_9	chr6	+	993	3	ISM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	2919	12	2140	-12	3prime_fragment	FALSE	canonical	3	98	junction_1	17.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGCACGTCTGCAGTGT	NA	False	NA	-2	True	ATTAAA	-9	NA	72335348	72336733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_72335419_72335561_72335740_72335988
ENSMUSG00000055917.16_0	chr12	-	1554	12	FSM	ENSMUSG00000055917.16	ENSMUST00000069637.15	2188	12	121	513	-7	-513	multi-exon	FALSE	canonical	3	359	junction_6	45.6703965821071	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTGGACTGAAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	40495780	40365557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
ENSMUSG00000055917.16_4	chr12	-	3391	11	NIC	ENSMUSG00000055917.16	novel	2188	12	NA	NA	-6	-506	intron_retention	FALSE	canonical	3	359	junction_5	47.5736271478221	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAGAAACTTTGTCATT	NA	False	NA	NA	False	AATAAA	-22	NA	40495779	40365550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
ENSMUSG00000055923.17_0	chr5	-	3668	16	FSM	ENSMUSG00000055923.17	ENSMUST00000120963.8	3694	16	21	5	-1	0	multi-exon	FALSE	canonical	3	29	junction_15	18.6828501275605	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAATTTGTCTGTGGTCCT	NA	False	NA	-3	True	ATTAAA	-16	NA	77053340	77023786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
ENSMUSG00000055923.17_1	chr5	-	3792	16	NIC	ENSMUSG00000055923.17	novel	3694	16	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_15	19.0349386363311	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAATTTGTCTGTGGTCCT	NA	False	NA	-3	True	ATTAAA	-16	NA	77053312	77023786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053117
ENSMUSG00000055923.17_3	chr5	-	1601	5	ISM	ENSMUSG00000055923.17	ENSMUST00000069709.15	3381	14	19222	-46	-605	0	3prime_fragment	FALSE	canonical	3	74	junction_2	11.1439445440113	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAATTTGTCTGTGGTCCT	NA	False	NA	-3	True	ATTAAA	-16	NA	77030812	77023786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113
ENSMUSG00000055923.17_4	chr5	-	3834	17	NIC	ENSMUSG00000055923.17	novel	3694	16	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_16	25.5535589497823	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAATTTGTCTGTGGTCCT	NA	False	NA	-3	True	ATTAAA	-16	NA	77053300	77023786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805_77052860_77053117
ENSMUSG00000055923.17_5	chr5	-	3704	17	NIC	ENSMUSG00000055923.17	novel	3694	16	NA	NA	14	2	combination_of_known_junctions	TRUE	canonical	3	18	junction_16	23.6798305526032	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTTGTCTGTGGTCCTTT	NA	False	NA	-1	True	ATTAAA	-18	NA	77053320	77023784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805_77052860_77053269
ENSMUSG00000055923.17_54	chr5	-	1211	5	FSM	ENSMUSG00000055923.17	ENSMUST00000154548.8	1080	5	2	-133	2	133	multi-exon	FALSE	canonical	3	29	junction_4	25.8891869319992	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAAGCTGTGTGTGTGTG	NA	False	NA	NA	False	AATAAA	-12	NA	77053337	77043955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
ENSMUSG00000055923.17_58	chr5	-	3605	15	NIC	ENSMUSG00000055923.17	novel	3694	16	NA	NA	-23	-1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_14	24.6315709144643	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGAATTTGTCTGTGGTCC	NA	False	NA	-4	True	ATTAAA	-15	NA	77053298	77023787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77053117
ENSMUSG00000055932.16_0	chr8	+	3528	9	FSM	ENSMUSG00000055932.16	ENSMUST00000069718.15	3564	9	25	11	-8	-11	multi-exon	FALSE	canonical	3	202	junction_7	44.2492937796752	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGCCTAAGAGCGTCCG	NA	False	NA	5	True	AATAAA	-13	NA	92040177	92395056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399_92249525_92392909
ENSMUSG00000055932.16_28	chr8	+	1526	1	ISM	ENSMUSG00000055932.16	ENSMUST00000069718.15	3564	9	353379	10	199219	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCCTAAGAGCGTCCGT	NA	False	NA	6	True	AATAAA	-14	NA	92393531	92395057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_92393500_92395100
ENSMUSG00000055943.6_0	chr2	+	1059	5	FSM	ENSMUSG00000055943.6	ENSMUST00000069747.6	5826	5	39	4728	39	-4728	multi-exon	FALSE	canonical	3	432	junction_1	48.4355241532493	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGATAAGATTATCTTCTG	399	False	NA	1	True	ATTAAA	-14	NA	112285380	112297779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_112285646_112289804_112289925_112293145_112293285_112295081_112295163_112297325
ENSMUSG00000055943.6_3	chr2	+	891	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	41	-4728	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	200.477398975545	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGATAAGATTATCTTCTG	401	False	NA	1	True	ATTAAA	-14	NA	112285382	112297779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_112285485_112289809_112289925_112293145_112293285_112295081_112295163_112297325
ENSMUSG00000055945.9_1	chr17	+	2981	1	ISM	ENSMUSG00000055945.9	ENSMUST00000069742.8	3408	2	697	30	364	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAATAATAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8559934	8562915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_8559900_8562900
ENSMUSG00000055963.13_0	chr4	+	1483	5	FSM	ENSMUSG00000055963.13	ENSMUST00000143186.8	888	5	-12	-583	-12	386	multi-exon	FALSE	canonical	3	8	junction_2	1.6393596310755	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAATAGAAAAA	24	False	NA	NA	False	NA	NA	NA	12906825	12981456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_12906939_12917915_12918066_12962941_12963024_12974729_12974816_12980404
ENSMUSG00000055963.13_1	chr4	+	1461	5	FSM	ENSMUSG00000055963.13	ENSMUST00000183345.2	3545	5	-9	2093	-9	390	multi-exon	FALSE	canonical	2	7	junction_2	1.87082869338697	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAATAGAAAAATACA	-12	True	NA	NA	False	NA	NA	NA	12906848	12981460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_12906939_12917915_12918066_12962944_12963024_12974729_12974816_12980404
ENSMUSG00000055978.6_0	chr7	-	2861	2	FSM	ENSMUSG00000055978.6	ENSMUST00000069800.6	2955	2	87	7	1	-7	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACAATTTCATGGTTTTT	9602	False	NA	NA	False	AATAAA	-14	NA	45315731	45298021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45300773_45315621
ENSMUSG00000055980.3_0	chr1	-	8274	2	FSM	ENSMUSG00000055980.3	ENSMUST00000069799.3	9144	2	859	11	859	-11	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACCCACAGATGTGC	NA	False	NA	NA	False	ATTAAA	-12	NA	82268278	82210832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_82215326_82264497
ENSMUSG00000055980.3_1	chr1	-	3464	1	NIC	ENSMUSG00000055980.3	novel	9144	2	NA	NA	2555	-52297	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATGGTCCTGATTCTG	NA	False	NA	NA	False	AATAAA	-32	NA	82266582	82263118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_82263100_82266600
ENSMUSG00000055980.3_2	chr1	-	815	1	ISM	ENSMUSG00000055980.3	ENSMUST00000069799.3	9144	2	57495	6	57495	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCACAGATGTGCATAGC	NA	False	NA	NA	False	ATTAAA	-17	NA	82211642	82210827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_82210800_82211600
ENSMUSG00000055991.16_0	chr5	+	3804	6	FSM	ENSMUSG00000055991.16	ENSMUST00000085671.10	3794	6	-17	7	-17	-7	multi-exon	FALSE	canonical	3	45	junction_2	9.08625335328044	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGCTGACTTGAGGT	920	False	NA	3	True	ATTAAA	-8	NA	145141354	145158553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145142519_145144385_145144519_145148555_145148639_145149314_145149451_145155096_145155694_145156862
ENSMUSG00000055991.16_1	chr5	+	3759	6	NIC	ENSMUSG00000055991.16	novel	3794	6	NA	NA	-17	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	25.9460979725276	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGCTGACTTGAGGT	920	False	NA	3	True	ATTAAA	-8	NA	145141354	145158553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_145142519_145144385_145144519_145148555_145148639_145149314_145149406_145155096_145155694_145156862
ENSMUSG00000055991.16_11	chr5	+	2660	5	NIC	ENSMUSG00000055991.16	novel	378	4	NA	NA	-4	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	28.4901298698339	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGCTGACTTGAGGT	4939	False	NA	3	True	ATTAAA	-8	NA	145145373	145158553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_145145527_145148555_145148639_145149314_145149451_145155096_145155694_145156862
ENSMUSG00000055991.16_14	chr5	+	2101	2	ISM	ENSMUSG00000055991.16	ENSMUST00000031601.8	3469	4	13806	7	9906	-7	3prime_fragment	FALSE	canonical	3	64	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGCTGACTTGAGGT	NA	False	NA	3	True	ATTAAA	-8	NA	145155283	145158553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_145155694_145156862
ENSMUSG00000055991.16_15	chr5	+	1513	1	ISM	ENSMUSG00000055991.16	ENSMUST00000085671.10	3794	6	15668	8	11662	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGAAGCTGACTTGAGG	NA	False	NA	2	True	ATTAAA	-7	NA	145157039	145158552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_145157000_145158600
ENSMUSG00000055991.16_5	chr5	+	3820	6	NIC	ENSMUSG00000055991.16	novel	3794	6	NA	NA	-20	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	25.568730903195	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGCTGACTTGAGGT	917	False	NA	3	True	ATTAAA	-8	NA	145141351	145158553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_145142519_145144372_145144519_145148555_145148639_145149314_145149451_145155096_145155694_145156862
ENSMUSG00000055991.16_6	chr5	+	3639	6	NNC	ENSMUSG00000055991.16	novel	3794	6	NA	NA	-15	-7	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_5	23.6101673013979	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGCTGACTTGAGGT	922	False	NA	3	True	ATTAAA	-8	NA	145141356	145158553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_145142519_145144385_145144519_145148555_145148639_145149314_145149451_145155096_145155531_145156862
ENSMUSG00000055994.16_0	chr8	+	4606	13	FSM	ENSMUSG00000055994.16	ENSMUST00000118370.8	4653	13	40	7	-29	-7	multi-exon	TRUE	canonical	0	0	junction_7	1.42156017576933	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTATTGAGTTACTGAA	NA	False	NA	NA	False	TATAAA	-15	NA	89373982	89415095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_89374038_89379492_89379960_89387166_89387273_89390325_89392142_89397038_89397123_89397290_89397375_89399302_89399387_89401533_89401618_89402074_89402159_89408241_89408326_89411073_89411158_89413257_89413924_89414187
ENSMUSG00000055994.16_2	chr8	+	2616	4	FSM	ENSMUSG00000055994.16	ENSMUST00000124091.2	2602	4	-31	17	-31	-17	multi-exon	FALSE	canonical	2	2	junction_2	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAATAACTATAGCTATT	NA	False	NA	NA	False	NA	NA	NA	89373980	89392311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_89374038_89379492_89379960_89387166_89387273_89390325
ENSMUSG00000056004.17_0	chr5	+	4122	21	FSM	ENSMUSG00000056004.17	ENSMUST00000134991.8	4115	21	-10	3	4	-3	multi-exon	FALSE	canonical	0	0	junction_3	2.3685438564654	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTATACCTTTGTGTTTAT	NA	False	NA	NA	False	AATAAA	-14	NA	9316121	9513980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_9316457_9430277_9430399_9449180_9449377_9460583_9460732_9467984_9468072_9470616_9470723_9471504_9471658_9472301_9472391_9477689_9477871_9478404_9478534_9484620_9484712_9485326_9485430_9487705_9487844_9490719_9490984_9491633_9491808_9495363_9495554_9496893_9496991_9497719_9497822_9509179_9509307_9511321_9511501_9512868
ENSMUSG00000056014.16_0	chr5	+	2974	5	NNC	ENSMUSG00000056014.16	novel	3038	4	NA	NA	-1	-5	intron_retention	FALSE	non_canonical	0	0	junction_4	11.7686022959398	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACTGTATTGGACACTC	1823	False	NA	44	True	AATAAA	-11	NA	138621136	138647093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_138621251_138634425_138634553_138637756_138637850_138644375_138646892_138646969
ENSMUSG00000056014.16_1	chr5	+	3065	4	FSM	ENSMUSG00000056014.16	ENSMUST00000069862.11	3038	4	-34	7	1	-7	multi-exon	FALSE	canonical	3	19	junction_3	4.92160768674447	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAAACTGTATTGGACAC	1808	False	NA	42	True	AATAAA	-9	NA	138621121	138647091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138621251_138634425_138634553_138637756_138637850_138644375
ENSMUSG00000056019.13_0	chr8	+	4415	3	FSM	ENSMUSG00000056019.13	ENSMUST00000188374.7	717	3	-62	-3636	0	786	multi-exon	FALSE	canonical	3	20	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATGCTGGGCTTTATCTT	NA	False	NA	NA	False	NA	NA	NA	72635862	72645542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72636053_72641107_72641235_72641444
ENSMUSG00000056019.13_1	chr8	+	3087	4	FSM	ENSMUSG00000056019.13	ENSMUST00000188685.7	7186	4	73	4026	11	789	multi-exon	FALSE	canonical	3	13	junction_3	3.85861230093008	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTGGGCTTTATCTTTGA	NA	False	NA	NA	False	NA	NA	NA	72635935	72645545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72636053_72641107_72641235_72641444_72641506_72642763
ENSMUSG00000056019.13_3	chr8	+	1860	1	ISM	ENSMUSG00000056019.13	ENSMUST00000188685.7	7186	4	7823	4026	2578	789	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTGGGCTTTATCTTTGA	NA	False	NA	NA	False	NA	NA	NA	72643685	72645545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_72643700_72645500
ENSMUSG00000056043.6_0	chr7	-	6221	1	FSM	ENSMUSG00000056043.6	ENSMUST00000069912.6	6590	1	354	15	354	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCATCTGGAAAAATGTTA	NA	False	NA	-10	True	AATAAA	-15	NA	35284653	35278432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_35278400_35284700
ENSMUSG00000056050.16_12	chr1	-	3075	24	NNC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	73	-1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	36.7126480319773	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCAGTGTCTGCTGATTC	NA	False	NA	-2	True	CATAAA	-17	NA	183126884	183107682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_183108509_183109058_183109201_183110440_183110513_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
ENSMUSG00000056050.16_2	chr1	-	3006	23	NIC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	70	-1	combination_of_known_junctions	FALSE	canonical	3	85	junction_22	21.1026613025369	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCAGTGTCTGCTGATTC	NA	False	NA	-2	True	CATAAA	-17	NA	183126887	183107682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
ENSMUSG00000056050.16_48	chr1	-	2868	22	NIC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	71	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	35.1730416248418	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGTGTCTGCTGATTCT	NA	False	NA	-1	True	CATAAA	-18	NA	183126886	183107681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
ENSMUSG00000056050.16_5	chr1	-	4573	25	ISM	ENSMUSG00000056050.16	ENSMUST00000194543.4	6330	28	11913	1	-6430	-1	3prime_fragment	FALSE	canonical	3	54	junction_22	31.5289769718094	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCAGTGTCTGCTGATTC	8575	False	NA	-2	True	CATAAA	-17	NA	183138981	183107682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183132406_183132550_183135177_183135484_183137604
ENSMUSG00000056050.16_7	chr1	-	6330	28	FSM	ENSMUSG00000056050.16	ENSMUST00000194543.4	6330	28	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_27	39.9558741524534	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGTGTCTGCTGATTCT	4043	False	NA	-1	True	CATAAA	-18	NA	183150894	183107681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183132406_183132550_183135177_183135484_183137604_183140360_183143388_183143476_183146987_183147122_183150737
ENSMUSG00000056055.14_0	chr1	+	179	1	ISM	ENSMUSG00000056055.14	ENSMUST00000130886.8	1886	9	21171	271	-1637	-271	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	87752572	87752751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_87752600_87752800
ENSMUSG00000056076.14_0	chr5	+	2957	19	FSM	ENSMUSG00000056076.14	ENSMUST00000100507.8	2945	19	-13	1	-13	-1	multi-exon	TRUE	canonical	3	2428	junction_3	310.145868707844	6525	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCTGTCCTGATCTCT	NA	False	NA	14	True	AATAAA	-15	NA	140405069	140429114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_140405582_140411016_140411210_140412191_140412312_140412537_140412596_140412771_140412901_140413164_140413323_140415806_140415939_140416016_140416084_140416725_140416773_140418678_140418890_140422002_140422076_140423039_140423163_140424070_140424150_140425667_140425807_140426740_140426867_140427491_140427570_140427878_140427988_140428074_140428192_140428628
ENSMUSG00000056091.13_0	chr6	+	2231	7	FSM	ENSMUSG00000056091.13	ENSMUST00000069994.11	2258	7	17	10	-14	-10	multi-exon	FALSE	canonical	3	38	junction_5	8.15304987242334	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCCTGACTTTGAGTGT	NA	False	NA	10	True	NA	NA	NA	72074592	72131545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_72074767_72105247_72105372_72109035_72109148_72119123_72119468_72124052_72124240_72126002_72126162_72130414
ENSMUSG00000056091.13_10	chr6	+	2161	6	NIC	ENSMUSG00000056091.13	novel	2258	7	NA	NA	-32	-17	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	21.1754574921063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGTGATTTCCTGACTT	NA	False	NA	3	True	NA	NA	NA	72074543	72131538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_72074767_72105247_72105372_72119123_72119468_72124052_72124240_72126002_72126162_72130414
ENSMUSG00000056091.13_5	chr6	+	1728	4	ISM	ENSMUSG00000056091.13	ENSMUST00000114112.4	2439	7	44599	21	26990	-21	3prime_fragment	FALSE	canonical	3	38	junction_2	6.68331255192114	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCCCTGTGATTTCCTG	3895	False	NA	-1	True	NA	NA	NA	72119205	72131534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_72119468_72124052_72124240_72126002_72126162_72130414
ENSMUSG00000056121.17_0	chr17	-	1903	8	FSM	ENSMUSG00000056121.17	ENSMUST00000070039.14	1939	8	33	3	-2	-2	multi-exon	FALSE	canonical	3	258	junction_3	15.727267365169	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCGGAGTCTTGAGTT	NA	False	NA	-9	True	AATAAA	-10	NA	78725527	78685316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
ENSMUSG00000056121.17_1	chr17	-	1791	7	NIC	ENSMUSG00000056121.17	novel	1939	8	NA	NA	1	-2	combination_of_known_splicesites	FALSE	canonical	3	5	junction_6	104.450945424156	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCGGAGTCTTGAGTT	NA	False	NA	-9	True	AATAAA	-10	NA	78725524	78685316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_78686175_78689036_78689103_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78725261
ENSMUSG00000056121.17_15	chr17	-	1714	6	ISM	ENSMUSG00000056121.17	ENSMUST00000234029.2	1516	7	-15	6131	-2	-6123	5prime_fragment	FALSE	canonical	3	258	junction_1	18.0731845561318	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTATCCTATAGTAAATA	NA	False	NA	NA	False	AATAAA	-12	NA	78725527	78691437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
ENSMUSG00000056124.6_0	chr18	-	5180	9	FSM	ENSMUSG00000056124.6	ENSMUST00000070080.6	5808	9	63	565	63	-565	multi-exon	FALSE	canonical	3	256	junction_5	29.4098197886352	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20879398	20818220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_20821526_20821991_20822094_20822277_20822401_20825448_20825637_20833795_20833913_20839461_20839587_20853085_20853200_20861018_20861136_20878409
ENSMUSG00000056124.6_4	chr18	-	2745	1	ISM	ENSMUSG00000056124.6	ENSMUST00000070080.6	5808	9	59053	8	59053	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATTTTGTGTGGTGATG	NA	False	NA	-11	True	AATATA	-8	NA	20820408	20817663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_20817700_20820400
ENSMUSG00000056130.11_0	chr18	-	2924	3	FSM	ENSMUSG00000056130.11	ENSMUST00000070084.11	4204	3	183	1097	183	-1097	multi-exon	FALSE	canonical	3	7	junction_1	2	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTGACTATTGGTCTCA	9688	False	NA	NA	False	AATAAA	-15	NA	46707417	46691454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_46694140_46705867_46705971_46707281
ENSMUSG00000056130.11_1	chr18	-	2777	2	NIC	ENSMUSG00000056130.11	novel	4204	3	NA	NA	227	-1097	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTGACTATTGGTCTCA	9732	False	NA	NA	False	AATAAA	-15	NA	46707373	46691454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_46694140_46707281
ENSMUSG00000056131.14_0	chr9	-	2025	13	FSM	ENSMUSG00000056131.14	ENSMUST00000070064.11	2666	13	6	635	6	-11	multi-exon	FALSE	canonical	3	372	junction_7	43.7311070317483	468	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTTTGCAGCCCCTTTC	NA	False	NA	-13	True	ATTAAA	-9	NA	86453874	86437064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ENSMUSG00000056133.6_0	chr17	-	2639	10	NNC	ENSMUSG00000056133.6	novel	2649	10	NA	NA	-11701	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	5.20208884920872	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATCTACGTCTTGCCCA	NA	False	NA	NA	False	AATAAA	-16	NA	7664564	7630218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_7631457_7637075_7637208_7637754_7637891_7639195_7639414_7641821_7641948_7643808_7644039_7644334_7644517_7646602_7646748_7646972_7647027_7664386
ENSMUSG00000056144.15_1	chr7	+	2491	8	FSM	ENSMUSG00000056144.15	ENSMUST00000106849.9	2578	8	83	4	47	-4	multi-exon	TRUE	canonical	1	1	junction_3	5.31843156256751	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTAAAAATTGAATCTGTT	NA	False	NA	3	True	ATTAAA	-11	NA	103893746	103911437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_103893800_103896737_103897358_103897893_103897990_103898601_103898833_103908619_103908643_103909324_103909426_103909684_103909712_103910097
ENSMUSG00000056144.15_2	chr7	+	2494	8	FSM	ENSMUSG00000056144.15	ENSMUST00000060315.12	2590	8	95	1	61	-1	multi-exon	FALSE	canonical	1	1	junction_3	5.3642809587196	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATTGAATCTGTTCAT	NA	False	NA	6	True	ATTAAA	-14	NA	103893760	103911440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_103893814_103896737_103897358_103897893_103897990_103898601_103898833_103908619_103908643_103909324_103909426_103909684_103909712_103910097
ENSMUSG00000056144.15_4	chr7	+	2443	7	ISM	ENSMUSG00000056144.15	ENSMUST00000060315.12	2590	8	3070	1	3036	-1	3prime_fragment	FALSE	canonical	1	1	junction_2	5.74456264653803	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATTGAATCTGTTCAT	NA	False	NA	6	True	ATTAAA	-14	NA	103896735	103911440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_103897358_103897893_103897990_103898601_103898833_103908619_103908643_103909324_103909426_103909684_103909712_103910097
ENSMUSG00000056153.16_11	chr18	-	1617	1	ISM	ENSMUSG00000056153.16	ENSMUST00000070116.12	6036	3	24209	3328	17224	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGAAATTGTTGCCTT	6110	False	NA	-7	True	ATTAAA	-23	NA	88888237	88886620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_88886600_88888200
ENSMUSG00000056153.16_2	chr18	-	2690	3	FSM	ENSMUSG00000056153.16	ENSMUST00000070116.12	6036	3	18	3328	6	-2	multi-exon	FALSE	canonical	3	70	junction_1	76	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGAAATTGTTGCCTT	NA	False	NA	-7	True	ATTAAA	-23	NA	88912428	88886620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_88889043_88905332_88905458_88912285
ENSMUSG00000056153.16_3	chr18	-	2763	1	ISM	ENSMUSG00000056153.16	ENSMUST00000070116.12	6036	3	24703	1688	17718	1317	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCTGTCTTCTAGTAT	6604	False	NA	NA	False	GATAAA	-14	NA	88887743	88884980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_88885000_88887700
ENSMUSG00000056153.16_4	chr18	-	2764	4	FSM	ENSMUSG00000056153.16	ENSMUST00000125362.8	2814	4	48	2	6	-2	multi-exon	FALSE	canonical	3	64	junction_2	64.5652125115891	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGAAATTGTTGCCTT	NA	False	NA	-7	True	ATTAAA	-23	NA	88912428	88886620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_88889043_88905115_88905190_88905332_88905458_88912285
ENSMUSG00000056153.16_5	chr18	-	2753	4	FSM	ENSMUSG00000056153.16	ENSMUST00000145120.3	1004	4	4	-1753	4	-2	multi-exon	FALSE	canonical	3	33	junction_2	77.821733611005	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGAAATTGTTGCCTT	NA	False	NA	-7	True	ATTAAA	-23	NA	88912430	88886620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_88889043_88905115_88905177_88905332_88905458_88912285
ENSMUSG00000056153.16_6	chr18	-	2722	4	NIC	ENSMUSG00000056153.16	novel	2814	4	NA	NA	0	5	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	88.3792333576666	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTTGCCTTTTCTGTC	NA	False	NA	0	True	ATTAAA	-30	NA	88912383	88886613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_88889043_88905115_88905190_88905336_88905458_88912285
ENSMUSG00000056153.16_7	chr18	-	2641	3	FSM	ENSMUSG00000056153.16	ENSMUST00000123826.2	2921	3	-44	324	-1	-3	multi-exon	FALSE	canonical	3	11	junction_1	105.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTTAGAAATTGTTGCCT	NA	False	NA	-8	True	ATTAAA	-22	NA	88912384	88886621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_88889043_88905336_88905458_88912285
ENSMUSG00000056155.7_2	chr8	-	772	2	FSM	ENSMUSG00000056155.7	ENSMUST00000070102.6	730	2	-40	-2	-40	0	multi-exon	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTTGGGACAAGGTGGT	NA	False	NA	-3	True	AATAAA	-17	NA	84903221	84900359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84900602_84902691
ENSMUSG00000056167.9_0	chr9	-	2713	20	NNC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	19	-136	at_least_one_novel_splicesite	FALSE	canonical	3	122	junction_5	132.25432982036	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGTTGGTTTGT	NA	False	NA	-13	True	TATAAA	-17	NA	114469229	114415169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439791_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUSG00000056167.9_1	chr9	-	2704	20	FSM	ENSMUSG00000056167.9	ENSMUST00000070117.8	2853	20	-76	225	30	-137	multi-exon	FALSE	canonical	3	122	junction_5	120.736887991548	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTTGTTGGTTTG	NA	False	NA	-14	True	TATAAA	-16	NA	114469218	114415170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUSG00000056167.9_19	chr9	-	3796	18	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	1	-136	intron_retention	FALSE	canonical	3	299	junction_6	61.6594621559125	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGTTGGTTTGT	NA	False	NA	-13	True	TATAAA	-17	NA	114469247	114415169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUSG00000056167.9_4	chr9	-	2699	19	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	0	-136	combination_of_known_splicesites	FALSE	canonical	3	267	junction_4	76.1876338755546	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGTTGGTTTGT	NA	False	NA	-13	True	TATAAA	-17	NA	114469248	114415169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUSG00000056167.9_5	chr9	-	2689	19	NNC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	7	-136	at_least_one_novel_splicesite	FALSE	canonical	3	162	junction_7	96.2047231971076	131	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGTTGGTTTGT	NA	False	NA	-13	True	TATAAA	-17	NA	114469241	114415169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439791_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUSG00000056185.6_1	chr19	-	2458	11	ISM	ENSMUSG00000056185.6	ENSMUST00000237945.2	2229	12	16	3041	2	-2	5prime_fragment	FALSE	canonical	0	0	junction_8	3.98622628559895	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCGGCTTGCCTTTACTT	100	False	NA	-2	True	AATAAA	-19	NA	5560508	5545303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5546011_5546085_5546246_5546343_5547054_5547317_5547394_5547474_5547581_5547702_5547808_5547932_5548057_5548207_5548330_5548439_5548535_5548747_5548853_5560360
ENSMUSG00000056185.6_3	chr19	-	2598	10	FSM	ENSMUSG00000056185.6	ENSMUST00000237924.2	3023	10	-7	432	-7	0	multi-exon	FALSE	canonical	2	7	junction_8	2.72618758808562	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAAGTCGGCTTGCCTTT	66	False	NA	-6	True	AATAAA	-15	NA	5560542	5545307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5546011_5546085_5546246_5546343_5547054_5547317_5547394_5547474_5547581_5547702_5547808_5547932_5548057_5548207_5548535_5548747_5548853_5560360
ENSMUSG00000056185.6_6	chr19	-	1640	13	FSM	ENSMUSG00000056185.6	ENSMUST00000070172.6	1703	13	59	4	3	0	multi-exon	FALSE	canonical	2	4	junction_1	3.3124344857253	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCGGCTTGCCTTTAC	101	False	NA	-4	True	AATAAA	-17	NA	5560507	5545305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5545677_5545924_5546011_5546085_5546246_5546343_5546431_5547013_5547054_5547317_5547394_5547474_5547581_5547702_5547808_5547932_5548057_5548207_5548330_5548423_5548535_5548747_5548853_5560360
ENSMUSG00000056201.9_1	chr19	+	1104	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	69	1181	8	-9	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	3382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATTAACAACATGGCTTT	NA	False	NA	3	True	NA	NA	NA	5540551	5544048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
ENSMUSG00000056201.9_18	chr19	+	192	1	ISM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	4554	1	4444	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	5545036	5545228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5545000_5545200
ENSMUSG00000056201.9_5	chr19	+	890	3	ISM	ENSMUSG00000056201.9	ENSMUST00000116560.3	1148	6	2114	42	2034	-42	intron_retention	FALSE	canonical	3	6173	junction_2	53.5	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAACAAAAA	NA	False	NA	-30	True	NA	NA	NA	5542626	5544015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_5542833_5543182_5543260_5543408
ENSMUSG00000056204.9_0	chr8	-	2055	5	FSM	ENSMUSG00000056204.9	ENSMUST00000070173.9	4883	5	40	2788	-30	955	multi-exon	FALSE	canonical	3	150	junction_1	24.3554408705735	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGGCCTACTCAGTGCA	NA	False	NA	NA	False	NA	NA	NA	71112348	71101872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71103436_71103831_71104065_71105054_71105172_71110077_71110131_71112259
ENSMUSG00000056204.9_1	chr8	-	2934	1	ISM	ENSMUSG00000056204.9	ENSMUST00000070173.9	4883	5	10367	3	6008	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTGCATCCAGTGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	71102021	71099087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71099100_71102000
ENSMUSG00000056204.9_3	chr8	-	2165	5	NIC	ENSMUSG00000056204.9	novel	4883	5	NA	NA	7	1073	combination_of_known_junctions	TRUE	canonical	3	7	junction_4	81.2603839518372	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAAGCTTATTTGTCG	NA	False	NA	-35	True	NA	NA	NA	71113031	71101754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71103436_71103831_71104065_71105054_71105172_71110077_71110131_71112950
ENSMUSG00000056204.9_5	chr8	-	4406	2	ISM	ENSMUSG00000056204.9	ENSMUST00000211526.2	805	4	4136	-4033	4136	-7	3prime_fragment	FALSE	canonical	3	150	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCATTGTGCATCCAGT	NA	False	NA	-12	True	AATAAA	-11	NA	71103893	71099091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_71103436_71103831
ENSMUSG00000056209.8_0	chr19	-	216	1	ISM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	1638	4	1596	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAATCCTTGTGTGGCTTTT	6525	False	NA	-4	True	AATAAA	-23	NA	45736392	45736176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_45736200_45736400
ENSMUSG00000056209.8_1	chr19	-	859	6	FSM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	27	2	-15	-2	multi-exon	FALSE	canonical	3	216	junction_3	39.9229257444892	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCCTTGTGTGGCTTTTTC	4914	False	NA	-2	True	AATAAA	-25	NA	45738003	45736174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
ENSMUSG00000056209.8_2	chr19	-	1154	5	ISM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	28	2	-14	-2	intron_retention	FALSE	canonical	3	216	junction_3	14.3614066163451	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCCTTGTGTGGCTTTTTC	4915	False	NA	-2	True	AATAAA	-25	NA	45738002	45736174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495
ENSMUSG00000056209.8_3	chr19	-	556	4	ISM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	813	2	771	-2	3prime_fragment	FALSE	canonical	3	216	junction_3	16.3095064303001	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCCTTGTGTGGCTTTTTC	5700	False	NA	-2	True	AATAAA	-25	NA	45737217	45736174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188
ENSMUSG00000056211.14_0	chr1	+	4484	24	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	15	-6	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_12	40.7907195049507	86	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTAGACCCACTTTGTC	NA	False	NA	12	True	AATAAA	-8	NA	128031082	128165466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109902_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ENSMUSG00000056211.14_17	chr1	+	4588	25	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	13	-6	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_14	61.9559515345827	38	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTAGACCCACTTTGTC	NA	False	NA	12	True	AATAAA	-8	NA	128031080	128165466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109902_128112136_128112392_128114494_128114647_128118374_128118477_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ENSMUSG00000056211.14_2	chr1	+	4642	25	NIC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	12	-1	combination_of_known_junctions	FALSE	canonical	3	51	junction_14	56.9085371207363	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACCCACTTTGTCTTTTT	NA	False	NA	17	True	AATAAA	-13	NA	128031079	128165471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128118374_128118477_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ENSMUSG00000056211.14_5	chr1	+	4539	24	NIC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	13	-1	combination_of_known_junctions	FALSE	canonical	3	143	junction_12	31.0798106715592	252	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACCCACTTTGTCTTTTT	NA	False	NA	17	True	AATAAA	-13	NA	128031080	128165471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ENSMUSG00000056211.14_6	chr1	+	4622	25	NIC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	16	-5	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	65.5311630702014	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAGACCCACTTTGTCT	NA	False	NA	13	True	AATAAA	-9	NA	128031083	128165467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_128031221_128079480_128079690_128080925_128081137_128090505_128090596_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
ENSMUSG00000056214.10_0	chr18	+	3137	3	FSM	ENSMUSG00000056214.10	ENSMUST00000070219.9	3147	3	11	-1	11	1	multi-exon	FALSE	canonical	3	46	junction_2	5.5	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTACCGTGTGTTATTGAT	NA	False	NA	21	True	AATAAA	-15	NA	80090115	80162855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80090358_80123039_80123263_80160183
ENSMUSG00000056214.10_2	chr18	+	1960	1	Genic_Genomic	ENSMUSG00000056214.10	novel	NA	NA	NA	NA	70791	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTACCGTGTGTTATTGAT	NA	False	NA	21	True	AATAAA	-15	NA	80160895	80162855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_+_80160900_80162900
ENSMUSG00000056215.14_0	chr6	+	3059	20	FSM	ENSMUSG00000056215.14	ENSMUST00000070189.10	3058	20	-1	0	-1	0	multi-exon	TRUE	canonical	1	1	junction_5	1.53806728381078	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCTTTTCCAGACTAATTA	NA	False	NA	NA	False	AATAAA	-19	NA	34006381	34110969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_34006689_34013435_34013544_34016242_34016325_34020339_34020441_34025793_34025876_34033005_34033131_34039285_34039430_34047995_34048077_34049304_34049392_34050650_34050758_34055598_34055719_34063310_34063408_34067106_34067221_34069671_34069874_34072458_34072555_34093323_34093455_34104111_34104201_34106039_34106166_34108899_34109046_34110255
ENSMUSG00000056216.10_2	chr7	-	3653	2	FSM	ENSMUSG00000056216.10	ENSMUST00000130491.3	4709	2	25	1031	25	-1031	multi-exon	FALSE	canonical	3	425	junction_1	0	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAACGACTTTTTCTTCGT	NA	False	NA	-9	True	AATAAA	-14	NA	34755973	34746877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_34750358_34755800
ENSMUSG00000056216.10_3	chr7	-	2521	1	FSM	ENSMUSG00000056216.10	ENSMUST00000205752.2	1610	1	1532	-2443	1532	-1031	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAACGACTTTTTCTTCGT	NA	False	NA	-9	True	AATAAA	-14	NA	34749398	34746877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_34746900_34749400
ENSMUSG00000056220.15_0	chr1	-	2828	18	FSM	ENSMUSG00000056220.15	ENSMUST00000070200.15	2856	18	10	18	4	0	multi-exon	FALSE	canonical	0	0	junction_2	1.05882352941176	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATTACCACTAGAAACT	3942	False	NA	NA	False	AATAAA	-12	NA	149837031	149705386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_149705944_149716368_149716527_149717914_149718111_149727017_149727203_149733195_149733436_149736805_149736878_149740661_149740755_149740866_149741005_149747151_149747267_149748288_149748512_149755740_149755878_149761897_149762040_149763357_149763396_149776850_149776965_149778044_149778194_149797805_149797888_149808408_149808508_149836941
ENSMUSG00000056228.11_2	chr8	-	1788	15	NIC	ENSMUSG00000056228.11	novel	1902	15	NA	NA	23	-2	combination_of_known_junctions	FALSE	canonical	3	153	junction_9	26.6340468006571	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATAGTAAAGTGGGCCTA	NA	False	NA	-62	True	ATTAAA	-23	NA	11600718	11564022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580425_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
ENSMUSG00000056228.11_28	chr8	-	787	4	FSM	ENSMUSG00000056228.11	ENSMUST00000210845.2	826	4	39	0	-10	0	multi-exon	FALSE	canonical	3	13	junction_1	105.379736614251	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTCAGCCTGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	11600705	11596676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_11597088_11597726_11597845_11600257_11600309_11600498
ENSMUSG00000056228.11_3	chr8	-	1120	9	ISM	ENSMUSG00000056228.11	ENSMUST00000210478.2	2007	15	20332	4	-10023	-4	3prime_fragment	FALSE	canonical	3	186	junction_7	21.2940719450273	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAATAGTAAAGTGGGCC	NA	False	NA	-64	True	ATTAAA	-21	NA	11580409	11564024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294
ENSMUSG00000056228.11_7	chr8	-	1797	15	FSM	ENSMUSG00000056228.11	ENSMUST00000049461.7	1902	15	61	44	19	0	multi-exon	FALSE	canonical	3	35	junction_9	50.1547096288991	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTAAAGTGGGCCTATG	NA	False	NA	-60	True	ATTAAA	-25	NA	11600722	11564020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580428_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
ENSMUSG00000056234.16_0	chr14	+	3383	10	FSM	ENSMUSG00000056234.16	ENSMUST00000163336.8	4065	10	72	610	-1	-2	multi-exon	TRUE	canonical	3	533	junction_6	51.0289194210886	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATCAGTTGTGTTTGTG	NA	False	NA	-4	True	ATTAAA	-11	NA	31881893	31901202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
ENSMUSG00000056234.16_27	chr14	+	2068	3	ISM	ENSMUSG00000056234.16	ENSMUST00000111994.10	3343	10	10661	2	-280	-2	3prime_fragment	FALSE	canonical	3	559	junction_1	39.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATCAGTTGTGTTTGTG	NA	False	NA	-4	True	ATTAAA	-11	NA	31898408	31901202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_31898913_31899189_31899331_31899779
ENSMUSG00000056234.16_3	chr14	+	3381	10	NIC	ENSMUSG00000056234.16	novel	4065	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_6	182.100365759865	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCAGTTGTGTTTGTGTT	NA	False	NA	-2	True	ATTAAA	-13	NA	31881894	31901204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896349_31896491_31897895_31898913_31899189_31899331_31899779
ENSMUSG00000056260.16_0	chr3	+	1588	3	FSM	ENSMUSG00000056260.16	ENSMUST00000098751.10	929	3	-19	-640	-19	-30	multi-exon	FALSE	canonical	3	7	junction_1	16.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATGTATTCAGATATT	NA	False	NA	-2	True	AATAAA	-10	NA	106592283	106643860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_106592450_106641673_106641956_106642720
ENSMUSG00000056260.16_1	chr3	+	3071	4	NIC	ENSMUSG00000056260.16	novel	929	3	NA	NA	-19	-27	intron_retention	FALSE	canonical	1	6	junction_1	13.9124245031395	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTATTCAGATATTTTT	NA	False	NA	1	True	AATAAA	-13	NA	106592283	106643863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_106592450_106638978_106640459_106641673_106641956_106642720
ENSMUSG00000056260.16_10	chr3	+	1672	1	Genic_Genomic	ENSMUSG00000056260.16	novel	NA	NA	NA	NA	2435	443	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTCTCAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106642664	106644336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_+_106642700_106644300
ENSMUSG00000056260.16_11	chr3	+	2273	3	ISM	ENSMUSG00000056260.16	ENSMUST00000098750.5	3103	4	10380	6	-598	-6	3prime_fragment	FALSE	canonical	3	25	junction_1	7.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGAAAGATGTATGGCT	NA	False	NA	22	True	AATAAA	-34	NA	106639631	106643884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_106640459_106641673_106641956_106642720
ENSMUSG00000056260.16_14	chr3	+	6384	2	ISM	ENSMUSG00000056260.16	ENSMUST00000106736.3	1669	3	7526	10	-3495	-7	3prime_fragment	FALSE	canonical	3	40	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTGAAAGATGTATGGC	NA	False	NA	21	True	AATAAA	-33	NA	106636734	106643883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_106641956_106642720
ENSMUSG00000056260.16_2	chr3	+	3098	4	FSM	ENSMUSG00000056260.16	ENSMUST00000098750.5	3103	4	-16	21	-5	-21	multi-exon	FALSE	canonical	2	11	junction_1	11.8415464455544	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAGATATTTTTCAATGT	NA	False	NA	7	True	AATAAA	-19	NA	106629235	106643869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_106629423_106638978_106640459_106641673_106641956_106642720
ENSMUSG00000056260.16_3	chr3	+	2967	4	NIC	ENSMUSG00000056260.16	novel	674	2	NA	NA	-77	-2	intron_retention	FALSE	canonical	1	2	junction_1	15.6276108929747	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGATGTATGGCTTTGT	NA	False	NA	26	True	AATAAA	-38	NA	106629131	106643888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_106629169_106638978_106640459_106641673_106641956_106642720
ENSMUSG00000056260.16_7	chr3	+	1627	3	FSM	ENSMUSG00000056260.16	ENSMUST00000106736.3	1669	3	33	9	0	-6	multi-exon	FALSE	canonical	3	21	junction_1	9.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGAAAGATGTATGGCT	NA	False	NA	22	True	AATAAA	-34	NA	106629241	106643884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_106629423_106641673_106641956_106642720
ENSMUSG00000056260.16_9	chr3	+	3075	4	NIC	ENSMUSG00000056260.16	novel	3103	4	NA	NA	14	-6	intron_retention	FALSE	canonical	0	0	junction_1	16.4991582276861	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGAAAGATGTATGGCT	NA	False	NA	22	True	AATAAA	-34	NA	106629265	106643884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_106629423_106638986_106640459_106641673_106641956_106642720
ENSMUSG00000056267.15_11	chr9	+	1819	6	FSM	ENSMUSG00000056267.15	ENSMUST00000185799.7	740	6	86	-1165	0	-1	multi-exon	TRUE	canonical	3	66	junction_1	121.109867475776	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGTGTTCTTGGTCATCA	NA	False	NA	6	True	NA	NA	NA	99125505	99146980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
ENSMUSG00000056267.15_2	chr9	+	2592	18	FSM	ENSMUSG00000056267.15	ENSMUST00000093795.10	2606	18	11	3	0	-3	multi-exon	TRUE	canonical	3	165	junction_10	72.0150887688172	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGTAAGTGTCCCTAGTG	NA	False	NA	15	True	AATAAA	-20	NA	99125505	99182454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
ENSMUSG00000056267.15_3	chr9	+	2635	18	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	83.1088001619555	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGTAAGTGTCCCTAGTG	NA	False	NA	15	True	AATAAA	-20	NA	99125506	99182454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
ENSMUSG00000056267.15_6	chr9	+	1780	6	FSM	ENSMUSG00000056267.15	ENSMUST00000190715.7	1768	6	-13	1	-5	-1	multi-exon	FALSE	canonical	3	228	junction_1	56.4361586219332	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGTGTTCTTGGTCATCA	NA	False	NA	6	True	NA	NA	NA	99125500	99146980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
ENSMUSG00000056267.15_8	chr9	+	2468	17	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	1	-3	combination_of_known_splicesites	FALSE	canonical	3	26	junction_2	75.3706466404528	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGTAAGTGTCCCTAGTG	NA	False	NA	15	True	AATAAA	-20	NA	99125506	99182454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_99125544_99128319_99128420_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
ENSMUSG00000056268.16_0	chr1	+	8234	23	NIC	ENSMUSG00000056268.16	novel	8206	22	NA	NA	7	-6	combination_of_known_junctions	FALSE	canonical	3	41	junction_8	11.4355000396583	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACATTGTGTGTGGTG	NA	False	NA	5	True	AATAAA	-11	NA	138891472	139103775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_138891624_138893903_138893969_138950842_138950887_138967737_138967788_138969661_138969782_138981083_138981154_138982278_138982360_138986804_138986865_138988012_138988067_138990598_138990710_139008910_139009012_139013620_139013667_139018191_139018294_139029705_139029832_139038121_139038224_139061408_139061500_139067118_139067160_139068189_139068259_139070571_139070629_139071630_139071739_139095408_139095495_139096569_139096787_139097493
ENSMUSG00000056268.16_1	chr1	+	8179	22	FSM	ENSMUSG00000056268.16	ENSMUST00000168527.8	8206	22	21	6	2	-6	multi-exon	TRUE	canonical	3	22	junction_7	13.1823079402048	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACATTGTGTGTGGTG	NA	False	NA	5	True	AATAAA	-11	NA	138891467	139103775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_138891624_138893903_138893969_138950842_138950887_138967737_138967788_138969661_138969782_138981083_138981154_138982278_138982360_138988012_138988067_138990598_138990710_139008910_139009012_139013620_139013667_139018191_139018294_139029705_139029832_139038121_139038224_139061408_139061500_139067118_139067160_139068189_139068259_139070571_139070629_139071630_139071739_139095408_139095495_139096569_139096787_139097493
ENSMUSG00000056268.16_24	chr1	+	3582	1	ISM	ENSMUSG00000056268.16	ENSMUST00000168527.8	8206	22	208747	6	50701	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACATTGTGTGTGGTG	NA	False	NA	5	True	AATAAA	-11	NA	139100193	139103775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_139100200_139103800
ENSMUSG00000056268.16_6	chr1	+	8077	21	NIC	ENSMUSG00000056268.16	novel	8206	22	NA	NA	-6	-6	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	17.482777239329	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACATTGTGTGTGGTG	NA	False	NA	5	True	AATAAA	-11	NA	138891459	139103775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_138891624_138893903_138893969_138950842_138950887_138981083_138981154_138982278_138982360_138986804_138986865_138988012_138988067_138990598_138990710_139008910_139009012_139013620_139013667_139018191_139018294_139029705_139029832_139038121_139038224_139061408_139061500_139067118_139067160_139068189_139068259_139070571_139070629_139071630_139071739_139095408_139095495_139096569_139096787_139097493
ENSMUSG00000056300.15_177	chr4	+	3062	5	FSM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	-30	6	-30	-6	multi-exon	FALSE	canonical	3	87	junction_2	129.101462036648	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	146586453	146623843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146621233
ENSMUSG00000056305.5_3	chr6	-	2146	13	FSM	ENSMUSG00000056305.5	ENSMUST00000070345.5	2244	13	4	94	4	-94	multi-exon	FALSE	canonical	3	571	junction_6	46.7748745470139	981	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGGCTGTTGTTTCAT	NA	False	NA	-27	True	ATTAAA	-16	NA	72322163	72295754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72296223_72296722_72296810_72298238_72298375_72302628_72302772_72305500_72305690_72306432_72306501_72310092_72310171_72313242_72313469_72314684_72314838_72315375_72315513_72316949_72317045_72319881_72319952_72321867
ENSMUSG00000056310.15_0	chr5	+	2502	16	NIC	ENSMUSG00000056310.15	novel	4698	9	NA	NA	2	-408	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	68.4530658350831	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTACTGGCTTTGTCCTT	3514	False	NA	18	True	AATAAA	-21	NA	130284461	130369996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_130284487_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
ENSMUSG00000056310.15_6	chr5	+	2610	16	FSM	ENSMUSG00000056310.15	ENSMUST00000040213.13	3044	16	26	408	26	-408	multi-exon	FALSE	canonical	3	235	junction_10	31.6406208676266	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTACTGGCTTTGTCCTT	4954	False	NA	18	True	AATAAA	-21	NA	130285901	130369996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
ENSMUSG00000056342.17_2	chr11	+	11400	79	NIC	ENSMUSG00000056342.17	novel	12200	80	NA	NA	-64	-12	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	28.4435754125342	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAAAAATAATGGTTTTA	257	False	NA	3	True	AATAAA	-10	NA	23256830	23439732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_23257017_23270660_23270749_23283438_23283860_23293319_23293371_23293510_23293661_23295149_23295218_23299150_23299344_23301591_23301654_23304844_23304927_23305005_23305099_23311278_23311405_23311586_23311717_23313057_23313189_23313790_23314513_23317338_23317554_23320238_23320355_23320443_23320572_23323320_23323411_23325000_23325097_23327554_23327638_23331224_23331380_23332553_23332668_23334400_23334501_23335012_23335173_23338433_23338561_23338663_23338812_23342841_23342943_23343751_23343962_23351452_23351579_23353559_23353683_23353811_23353896_23355866_23355954_23362214_23362416_23364735_23364819_23367462_23367504_23367648_23367774_23368978_23369132_23370039_23370145_23371097_23371154_23371245_23371367_23376061_23376246_23376634_23376796_23379299_23379366_23382245_23382393_23382477_23382535_23382618_23382697_23383179_23383275_23385906_23386080_23388866_23389021_23391099_23391179_23394146_23394201_23394305_23394402_23396431_23396497_23396578_23396655_23396743_23396792_23396917_23396984_23399212_23399294_23401995_23402082_23402518_23402688_23402790_23402866_23404524_23404677_23407797_23407847_23407931_23408037_23408114_23408160_23409123_23409229_23410561_23410710_23414216_23414852_23417145_23417304_23418804_23418884_23420288_23420416_23421481_23421590_23422949_23423055_23423169_23423295_23424265_23424390_23434101_23434182_23436817_23436959_23437078_23437223_23438208_23438369_23438583
ENSMUSG00000056342.17_5	chr11	+	7815	61	NIC	ENSMUSG00000056342.17	novel	12200	80	NA	NA	31	-1892	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	28.0282149508907	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTTGTGGCTCACGAAT	373	False	NA	13	True	CATAAA	-26	NA	23256946	23404794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_23257017_23270660_23270749_23283438_23283860_23293319_23293371_23293510_23293661_23295149_23295218_23299150_23299344_23301591_23301654_23304844_23304927_23305005_23305099_23311278_23311405_23311586_23311717_23313057_23313189_23313790_23314513_23317338_23317554_23320238_23320355_23320443_23320572_23323320_23323411_23325000_23325097_23327554_23327638_23331224_23331380_23332553_23332668_23334400_23334501_23335012_23335173_23338433_23338561_23338663_23338812_23342841_23342943_23343751_23343962_23351452_23351579_23353559_23353683_23353811_23353896_23355866_23355954_23362214_23362416_23364735_23364819_23367462_23367504_23367648_23367774_23368978_23369132_23370039_23370145_23371097_23371154_23371245_23371367_23376061_23376246_23376634_23376796_23379299_23379366_23382245_23382393_23382477_23382535_23382618_23382697_23383179_23383275_23385906_23386080_23388866_23389021_23391099_23391179_23394146_23394201_23394305_23394402_23396431_23396497_23396578_23396655_23396743_23396792_23396917_23396984_23399212_23399294_23401995_23402082_23402518_23402688_23402790_23402866_23404524
ENSMUSG00000056342.17_52	chr11	+	4914	32	ISM	ENSMUSG00000056342.17	ENSMUST00000137823.8	11363	80	129041	9	15902	-9	3prime_fragment	FALSE	canonical	3	59	junction_19	16.1102471251984	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATAATGGTTTTATTT	NA	False	NA	6	True	AATAAA	-13	NA	23385956	23439735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_23386080_23388866_23389021_23391099_23391179_23394146_23394201_23394305_23394402_23396431_23396497_23396578_23396655_23396743_23396792_23396917_23396984_23399212_23399294_23401995_23402082_23402518_23402688_23402790_23402866_23404524_23404677_23407797_23407847_23407931_23408037_23408114_23408160_23409123_23409229_23410561_23410710_23414216_23414852_23417145_23417304_23418804_23418884_23420288_23420416_23421481_23421590_23422949_23423055_23423169_23423295_23424265_23424390_23434101_23434182_23436817_23436959_23437078_23437223_23438208_23438369_23438583
ENSMUSG00000056342.17_65	chr11	+	3911	21	ISM	ENSMUSG00000056342.17	ENSMUST00000137823.8	11363	80	145675	12	-5347	-12	3prime_fragment	FALSE	canonical	3	59	junction_8	17.3352242558324	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAAAAATAATGGTTTTA	990	False	NA	3	True	AATAAA	-10	NA	23402590	23439732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_23402688_23402790_23402866_23404524_23404677_23407797_23407847_23407931_23408037_23408114_23408160_23409123_23409229_23410561_23410710_23414216_23414852_23417145_23417304_23418804_23418884_23420288_23420416_23421481_23421590_23422949_23423055_23423169_23423295_23424265_23424390_23434101_23434182_23436817_23436959_23437078_23437223_23438208_23438369_23438583
ENSMUSG00000056342.17_74	chr11	+	2851	13	ISM	ENSMUSG00000056342.17	ENSMUST00000137823.8	11363	80	157585	12	-5788	-12	3prime_fragment	FALSE	canonical	3	72	junction_2	17.0928835094219	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAAAAATAATGGTTTTA	NA	False	NA	3	True	AATAAA	-10	NA	23414500	23439732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_23414852_23417145_23417304_23418804_23418884_23420288_23420416_23421481_23421590_23422949_23423055_23423169_23423295_23424265_23424390_23434101_23434182_23436817_23436959_23437078_23437223_23438208_23438369_23438583
ENSMUSG00000056367.15_2	chr5	+	1955	11	NIC	ENSMUSG00000056367.15	novel	1712	12	NA	NA	-17	-5	combination_of_known_splicesites	TRUE	canonical	3	16	junction_6	37.7095478625772	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATAACTGTTCCTTGTG	NA	False	NA	5	True	AATAAA	-13	NA	25964977	26055681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
ENSMUSG00000056367.15_3	chr5	+	2102	12	FSM	ENSMUSG00000056367.15	ENSMUST00000088244.6	1712	12	-46	-344	-17	-2	multi-exon	FALSE	canonical	3	90	junction_4	20.0016528242663	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAACTGTTCCTTGTGGTC	NA	False	NA	8	True	AATAAA	-16	NA	25964977	26055684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
ENSMUSG00000056367.15_6	chr5	+	2025	11	FSM	ENSMUSG00000056367.15	ENSMUST00000128727.8	2031	11	4	2	4	-2	multi-exon	FALSE	canonical	3	28	junction_1	35.2080956599473	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAACTGTTCCTTGTGGTC	NA	False	NA	8	True	AATAAA	-16	NA	25964998	26055684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_25965127_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
ENSMUSG00000056380.14_0	chrX	+	3067	2	FSM	ENSMUSG00000056380.14	ENSMUST00000070449.6	3069	2	1	1	1	-1	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTGTGACTCTTTATTC	NA	False	NA	NA	False	AATAAA	-18	NA	70707273	70712862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_70707609_70710130
ENSMUSG00000056383.11_0	chr7	-	2748	4	FSM	ENSMUSG00000056383.11	ENSMUST00000071804.10	2671	4	-85	8	-33	-8	multi-exon	FALSE	canonical	3	26	junction_3	27.3901847788988	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAAATTTCCTTTTTTC	NA	False	NA	-22	True	AATAAA	-17	NA	41042769	41022354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41042650
ENSMUSG00000056383.11_1	chr7	-	4022	4	NIC	ENSMUSG00000056383.11	novel	2071	5	NA	NA	29	-3	intron_retention	FALSE	canonical	3	47	junction_3	14.613540144522	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTCCTTTTTTCTGACT	NA	False	NA	-17	True	AATAAA	-22	NA	41042774	41022349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_41025973_41026169_41026297_41037531_41037680_41042650
ENSMUSG00000056383.11_14	chr7	-	2839	4	NIC	ENSMUSG00000056383.11	novel	2071	5	NA	NA	-29	-3	intron_retention	FALSE	canonical	1	2	junction_1	24.2257897474755	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTCCTTTTTTCTGACT	NA	False	NA	-17	True	AATAAA	-22	NA	41042765	41022349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_41024799_41026169_41026297_41037531_41037680_41042650
ENSMUSG00000056383.11_2	chr7	-	2899	5	Fusion	ENSMUSG00000074166.8_ENSMUSG00000056383.11	novel	2071	5	NA	NA	-7	-8	intron_retention	FALSE	canonical	0	0	junction_4	34.3329288002058	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAAATTTCCTTTTTTC	NA	False	NA	-22	True	AATAAA	-17	NA	41148839	41022354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_-_41024799_41025914_41025973_41026169_41026297_41037531_41037680_41148717
ENSMUSG00000056383.11_4	chr7	-	2896	5	FSM	ENSMUSG00000056383.11	ENSMUST00000205338.2	2071	5	34	-859	-33	-8	multi-exon	FALSE	canonical	3	47	junction_4	16.2845785944863	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAAATTTCCTTTTTTC	NA	False	NA	-22	True	AATAAA	-17	NA	41042769	41022354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41037531_41037680_41042650
ENSMUSG00000056383.11_5	chr7	-	1615	1	ISM	ENSMUSG00000056383.11	ENSMUST00000071804.10	2671	4	18720	3	18720	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTCCTTTTTTCTGACT	NA	False	NA	-17	True	AATAAA	-22	NA	41023964	41022349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_41022300_41024000
ENSMUSG00000056383.11_7	chr7	-	2751	5	Fusion	ENSMUSG00000074166.8_ENSMUSG00000056383.11	novel	2071	5	NA	NA	-6	-7	intron_retention	TRUE	non_canonical	0	0	junction_4	36.698092593485	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAAATTTCCTTTTTTCT	NA	False	NA	-21	True	AATAAA	-18	NA	41148838	41022353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_-_41024799_41025914_41025973_41026169_41026297_41042650_41042749_41148815
ENSMUSG00000056394.21_1	chr7	+	3274	28	FSM	ENSMUSG00000056394.21	ENSMUST00000177588.10	3174	28	-101	1	-101	-1	multi-exon	TRUE	canonical	3	470	junction_1	193.081793225492	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGGTGAGGAGGTCTAC	1006	False	NA	29	True	AATAAA	-17	NA	13011137	13045349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_13011456_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ENSMUSG00000056394.21_18	chr7	+	3057	28	FSM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	33	1	24	-1	multi-exon	FALSE	canonical	0	0	junction_1	267.791767474326	1821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGGTGAGGAGGTCTAC	2653	False	NA	29	True	AATAAA	-17	NA	13012784	13045349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ENSMUSG00000056394.21_20	chr7	+	3056	28	NIC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	31	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	347.18983947761	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGGTGAGGAGGTCTAC	2660	False	NA	29	True	AATAAA	-17	NA	13012791	13045349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023313_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ENSMUSG00000056412.7_0	chr4	-	595	1	FSM	ENSMUSG00000056412.7	ENSMUST00000121600.2	306	1	-163	-126	-163	126	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6157	False	NA	NA	False	AATAAA	-13	NA	40775727	40775132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_40775100_40775700
ENSMUSG00000056413.17_0	chr5	-	2491	11	FSM	ENSMUSG00000056413.17	ENSMUST00000110865.2	2557	11	60	6	60	-6	multi-exon	FALSE	canonical	3	178	junction_10	23.6296424010183	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCCCTTCTGTGTGTTT	5018	False	NA	-11	True	AATAAA	-14	NA	139311317	139257636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_139258832_139259089_139259319_139259489_139259562_139260201_139260265_139260483_139260568_139265263_139265411_139266459_139266573_139278890_139278974_139288058_139288151_139293496_139293628_139311035
ENSMUSG00000056413.17_1	chr5	-	2733	10	NIC	ENSMUSG00000056413.17	novel	2557	11	NA	NA	75	-7	intron_retention	FALSE	canonical	3	178	junction_9	23.5843639350783	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTGTCCCTTCTGTGTGTT	5033	False	NA	-12	True	AATAAA	-13	NA	139311302	139257637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_139259319_139259489_139259562_139260201_139260265_139260483_139260568_139265263_139265411_139266459_139266573_139278890_139278974_139288058_139288151_139293496_139293628_139311035
ENSMUSG00000056413.17_2	chr5	-	2424	10	NIC	ENSMUSG00000056413.17	novel	2557	11	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	21	junction_9	64.29407744934	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCTGTGTGTTTATGGC	4959	False	NA	-6	True	AATAAA	-19	NA	139311376	139257631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_139258832_139259089_139259319_139259489_139259562_139260201_139260265_139260483_139260568_139265263_139265411_139266459_139266573_139278890_139278974_139288058_139288151_139311035
ENSMUSG00000056413.17_5	chr5	-	771	1	ISM	ENSMUSG00000056413.17	ENSMUST00000151450.8	2155	11	33672	1	1994	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCTGTGTGTTTATGGC	NA	False	NA	-6	True	AATAAA	-19	NA	139258402	139257631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_139257600_139258400
ENSMUSG00000056427.11_3	chr11	+	4393	31	ISM	ENSMUSG00000056427.11	ENSMUST00000069837.4	5228	36	423382	182	-79	-182	3prime_fragment	FALSE	canonical	1	2	junction_11	2.50532765654847	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGACTATTTTCATCTT	NA	False	NA	NA	False	AATAAA	-28	NA	35435432	35599152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_35435628_35455451_35455524_35461394_35461559_35469792_35469935_35479759_35479832_35485788_35485861_35490242_35490315_35501418_35501563_35503099_35503264_35512834_35512986_35514267_35514343_35520549_35520694_35521669_35521814_35523538_35523703_35524728_35524862_35539859_35539929_35541926_35541999_35542574_35542647_35550165_35550238_35552012_35552177_35554888_35555014_35560900_35560999_35566671_35566812_35570228_35570323_35574863_35575002_35577082_35577324_35579379_35579511_35589132_35589288_35591030_35591317_35593938_35594148_35598733
ENSMUSG00000056427.11_5	chr11	+	5238	36	FSM	ENSMUSG00000056427.11	ENSMUST00000069837.4	5228	36	-142	132	-142	-132	multi-exon	TRUE	canonical	0	0	junction_4	2.67016776970425	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGGACTATACAGTGAG	NA	False	NA	NA	False	TATAAA	-19	NA	35011908	35599202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_35012539_35062399_35062472_35068609_35068682_35125663_35125736_35399049_35399122_35435555_35435628_35455451_35455524_35461394_35461559_35469792_35469935_35479759_35479832_35485788_35485861_35490242_35490315_35501418_35501563_35503099_35503264_35512834_35512986_35514267_35514343_35520549_35520694_35521669_35521814_35523538_35523703_35524728_35524862_35539859_35539929_35541926_35541999_35542574_35542647_35550165_35550238_35552012_35552177_35554888_35555014_35560900_35560999_35566671_35566812_35570228_35570323_35574863_35575002_35577082_35577324_35579379_35579511_35589132_35589288_35591030_35591317_35593938_35594148_35598733
ENSMUSG00000056429.5_0	chr6	-	2722	1	ISM	ENSMUSG00000056429.5	ENSMUST00000070524.5	5013	4	5847	0	5847	0	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCATTGAAACATTACAT	NA	False	NA	-37	True	AATAAA	-12	NA	72588136	72585414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_72585400_72588100
ENSMUSG00000056429.5_1	chr6	-	4758	4	FSM	ENSMUSG00000056429.5	ENSMUST00000070524.5	5013	4	255	0	255	0	multi-exon	FALSE	canonical	3	270	junction_1	25.9786236911983	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCATTGAAACATTACAT	4674	False	NA	-37	True	AATAAA	-12	NA	72593728	72585414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72589094_72591054_72591139_72592506_72593433_72593659
ENSMUSG00000056429.5_2	chr6	-	4235	3	ISM	ENSMUSG00000056429.5	ENSMUST00000070524.5	5013	4	1005	0	1005	0	3prime_fragment	FALSE	canonical	3	270	junction_1	2	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCATTGAAACATTACAT	5424	False	NA	-37	True	AATAAA	-12	NA	72592978	72585414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_72589094_72591054_72591139_72592506
ENSMUSG00000056436.5_0	chr2	-	602	3	NIC	ENSMUSG00000056436.5	novel	655	4	NA	NA	21	-3	combination_of_known_splicesites	FALSE	canonical	3	45	junction_2	94.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTCGTGCGTTATGTTTA	NA	False	NA	-2	True	AATAAA	-27	NA	76190773	76184288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_76184581_76186423_76186617_76190656
ENSMUSG00000056436.5_1	chr2	-	625	4	FSM	ENSMUSG00000056436.5	ENSMUST00000028430.6	655	4	21	9	21	-9	multi-exon	FALSE	canonical	3	132	junction_3	45.146674542232	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTCCACTCGTGCGTTA	NA	False	NA	-8	True	AATAAA	-21	NA	76190773	76184294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_76184581_76186423_76186617_76187916_76187946_76190656
ENSMUSG00000056436.5_2	chr2	-	4606	2	ISM	ENSMUSG00000056436.5	ENSMUST00000028430.6	655	4	51	9	51	-9	intron_retention	FALSE	canonical	3	234	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTCCACTCGTGCGTTA	NA	False	NA	-8	True	AATAAA	-21	NA	76190743	76184294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76184581_76186423
ENSMUSG00000056436.5_8	chr2	-	231	1	ISM	ENSMUSG00000056436.5	ENSMUST00000028430.6	655	4	6276	2	6276	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCGTGCGTTATGTTTAT	NA	False	NA	-1	True	AATAAA	-28	NA	76184518	76184287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_76184300_76184500
ENSMUSG00000056458.17_1	chr12	-	1495	11	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	10	-2	combination_of_known_junctions	FALSE	canonical	3	80	junction_10	69.6330381356436	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCAAGGGTTTGTTTCAT	7682	False	NA	-5	True	AATATA	-16	NA	110807351	110774233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
ENSMUSG00000056458.17_10	chr12	-	1393	9	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	11	-1	combination_of_known_junctions	FALSE	canonical	3	54	junction_8	74.9615526453395	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCAAGGGTTTGTTTCATT	7683	False	NA	-4	True	AATATA	-17	NA	110807350	110774232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
ENSMUSG00000056458.17_11	chr12	-	1220	8	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	8	-3	combination_of_known_junctions	FALSE	canonical	3	54	junction_7	79.9971938283348	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	7680	False	NA	-6	True	AATATA	-15	NA	110807353	110774234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
ENSMUSG00000056458.17_16	chr12	-	1669	12	FSM	ENSMUSG00000056458.17	ENSMUST00000070565.15	1693	12	22	2	10	-2	multi-exon	FALSE	canonical	3	80	junction_11	66.0974737267458	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCAAGGGTTTGTTTCAT	7682	False	NA	-5	True	AATATA	-16	NA	110807351	110774233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
ENSMUSG00000056458.17_5	chr12	-	1651	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1825	-3	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_11	66.2311254884822	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	9497	False	NA	-6	True	AATATA	-15	NA	110805536	110774234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
ENSMUSG00000056459.15_13	chr12	-	1598	3	FSM	ENSMUSG00000056459.15	ENSMUST00000167011.8	1681	3	38	45	-33	0	multi-exon	FALSE	canonical	0	0	junction_2	42	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTATGAGCTTTTCTATA	NA	False	NA	-2	True	ATTAAA	-16	NA	76416200	76395718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_76397048_76402662_76402843_76416111
ENSMUSG00000056459.15_14	chr12	-	220	1	ISM	ENSMUSG00000056459.15	ENSMUST00000176102.8	2707	3	7977	1162	7977	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTATGAGCTTTTCTATAC	NA	False	NA	-1	True	ATTAAA	-17	NA	76395937	76395717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_76395700_76395900
ENSMUSG00000056459.15_4	chr12	-	1644	3	FSM	ENSMUSG00000056459.15	ENSMUST00000176278.8	1672	3	28	0	28	0	multi-exon	FALSE	canonical	3	78	junction_2	3	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTATGAGCTTTTCTATA	NA	False	NA	-2	True	ATTAAA	-16	NA	76416348	76395718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_76397048_76402662_76402843_76416213
ENSMUSG00000056459.15_5	chr12	-	1629	3	NIC	ENSMUSG00000056459.15	novel	1672	3	NA	NA	24	10	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	31	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTTTAAGAGTGAGTG	NA	False	NA	-2	True	ATTAAA	-29	NA	76416352	76395663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_76396974_76402662_76402843_76416213
ENSMUSG00000056476.14_11	chr3	+	5127	9	ISM	ENSMUSG00000056476.14	ENSMUST00000197374.2	3900	17	7861	-2508	7861	0	3prime_fragment	FALSE	canonical	3	10	junction_5	2.17586189819115	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAAAGTCTGCAGAT	NA	False	NA	NA	False	ATTAAA	-9	NA	59172343	59225831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_59172706_59174543_59174701_59183216_59183456_59201646_59201737_59203425_59203656_59205210_59205368_59208700_59208797_59220273_59220356_59222117
ENSMUSG00000056476.14_14	chr3	+	2645	1	ISM	ENSMUSG00000056476.14	ENSMUST00000199659.5	11006	44	309279	272	58704	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAAAGTCTGCAGAT	NA	False	NA	NA	False	ATTAAA	-9	NA	59223186	59225831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_59223200_59225800
ENSMUSG00000056476.14_23	chr3	+	5862	15	NIC	ENSMUSG00000056476.14	novel	11006	44	NA	NA	-1239	-11	combination_of_known_splicesites	TRUE	canonical	0	0	junction_12	4.46357137141943	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACTTCTTCCAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	59163243	59225820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_59163428_59164462_59164538_59164649_59164841_59165602_59165765_59167022_59167135_59168164_59168255_59169294_59169405_59169630_59169767_59170545_59170708_59172342_59172706_59174543_59174701_59183216_59183456_59208700_59208797_59220273_59220356_59222117
ENSMUSG00000056481.8_0	chr19	+	2534	1	FSM	ENSMUSG00000056481.8	ENSMUST00000070630.8	2605	1	33	38	33	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATCCCCACTGATGCCTG	6811	False	NA	NA	False	AATAAA	-27	NA	5118138	5120672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5118100_5120700
ENSMUSG00000056486.19_1	chr2	-	2384	13	FSM	ENSMUSG00000056486.19	ENSMUST00000112024.10	4050	13	-22	1688	-22	-12	multi-exon	FALSE	canonical	1	103	junction_1	53.6273147648555	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAATCAAAAACACTAATA	NA	False	NA	47	True	ATTAAA	-11	NA	73605712	73442691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73490023_73490102_73509958_73510248_73537262_73537377_73540798_73540831_73546707_73546764_73551746_73551786_73605366
ENSMUSG00000056486.19_10	chr2	-	2294	12	NIC	ENSMUSG00000056486.19	novel	4050	13	NA	NA	-10	-12	intron_retention	FALSE	canonical	1	16	junction_6	88.3547507691073	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAATCAAAAACACTAATA	NA	False	NA	47	True	ATTAAA	-11	NA	73605700	73442691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73509958_73510248_73537262_73537377_73540798_73540831_73546707_73546764_73551746_73551786_73605366
ENSMUSG00000056486.19_11	chr2	-	2080	12	NIC	ENSMUSG00000056486.19	novel	4050	13	NA	NA	-7	-12	intron_retention	FALSE	canonical	1	28	junction_7	85.6295114031401	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAATCAAAAACACTAATA	NA	False	NA	47	True	ATTAAA	-11	NA	73605697	73442691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73490023_73490102_73537262_73537377_73540798_73540831_73546707_73546764_73551746_73551786_73605366
ENSMUSG00000056493.10_0	chr5	+	2382	9	FSM	ENSMUSG00000056493.10	ENSMUST00000072837.7	7439	9	10	5047	10	-5047	multi-exon	FALSE	canonical	3	17	junction_3	5.8309518948453	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGGGGTTCTGTGTGT	NA	False	NA	NA	False	CATAAA	-26	NA	142387264	142442719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_142387797_142420895_142421082_142434441_142434599_142435995_142436143_142437193_142437388_142439263_142439431_142439514_142439800_142441107_142441333_142442230
ENSMUSG00000056493.10_5	chr5	+	3633	1	ISM	ENSMUSG00000056493.10	ENSMUST00000072837.7	7439	9	56872	7	56872	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGATGTACCCAAGGGT	3018	False	NA	5	True	AATAAA	-12	NA	142444126	142447759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_142444100_142447800
ENSMUSG00000056501.4_0	chr2	+	1435	1	FSM	ENSMUSG00000056501.4	ENSMUST00000070642.4	1504	1	53	16	53	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	491	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGTTTAAAAGCCTTTT	NA	False	NA	16	True	AATAAA	-10	NA	167530887	167532322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_167530900_167532300
ENSMUSG00000056515.10_0	chr17	-	3361	7	FSM	ENSMUSG00000056515.10	ENSMUST00000070673.9	3473	7	111	1	-1	-1	multi-exon	TRUE	canonical	3	62	junction_1	10.1775897605147	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGTGTCCTTTCCTCAT	NA	False	NA	-1	True	AATAAA	-14	NA	66079636	65958724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_65961499_65974860_65974971_66003265_66003373_66004985_66005058_66024476_66024559_66029002_66029083_66079500
ENSMUSG00000056515.10_1	chr17	-	1423	1	ISM	ENSMUSG00000056515.10	ENSMUST00000070673.9	3473	7	119600	1	119488	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGTGTCCTTTCCTCAT	1334	False	NA	-1	True	AATAAA	-14	NA	65960147	65958724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_65958700_65960100
ENSMUSG00000056531.12_1	chr5	+	4691	29	FSM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	-72	717	-33	-717	multi-exon	FALSE	canonical	2	47	junction_16	11.5130804048336	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAAAATTAAGTCAATTT	1071	False	NA	NA	False	AATATA	-12	NA	108280707	108380777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_108280865_108283287_108283431_108283838_108284011_108286779_108286939_108288724_108288832_108296776_108296906_108303624_108303722_108306390_108306513_108309332_108309625_108311513_108311639_108315874_108316030_108319478_108319700_108321616_108321728_108322731_108322864_108328263_108328399_108328679_108328758_108336797_108336915_108339748_108339917_108341566_108341710_108343861_108344026_108345622_108345837_108349190_108349291_108349930_108350048_108354460_108354605_108359959_108360164_108363852_108363991_108368563_108368765_108376445_108376914_108380599
ENSMUSG00000056531.12_15	chr5	+	3068	3	ISM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	-84	94900	-45	-847	5prime_fragment	FALSE	canonical	2	80	junction_2	6.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGTACTTAATTTGTAC	1059	False	NA	NA	False	AATAAA	-17	NA	108280695	108286594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_108280865_108283287_108283431_108283838
ENSMUSG00000056531.12_6	chr5	+	1117	4	ISM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	-61	94059	-22	-6	5prime_fragment	FALSE	canonical	2	80	junction_2	5.90668171555645	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAACAAAAACCCTCC	1082	False	NA	NA	False	NA	NA	NA	108280718	108287435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_108280865_108283287_108283431_108283838_108284011_108286779
ENSMUSG00000056536.15_0	chr1	-	2518	1	ISM	ENSMUSG00000056536.15	ENSMUST00000070699.15	6528	29	138063	6	48003	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGTTTTCTTGTGATAA	NA	False	NA	-7	True	AATAAA	-13	NA	105448670	105446152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_105446200_105448700
ENSMUSG00000056536.15_1	chr1	-	6766	31	FSM	ENSMUSG00000056536.15	ENSMUST00000186485.7	6759	31	-9	2	1	-2	multi-exon	TRUE	canonical	3	42	junction_6	10.8119789534057	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGTTTTCTTGTGATAA	NA	False	NA	-7	True	AATAAA	-13	NA	105591396	105446152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_105449853_105474388_105474442_105476789_105476833_105480096_105480171_105481788_105481865_105482168_105482225_105485187_105485275_105485712_105485816_105493872_105493976_105507646_105507756_105512713_105512823_105515704_105515797_105516773_105516867_105516950_105517051_105519346_105519487_105525392_105525576_105526773_105526853_105565234_105565291_105565907_105566001_105568389_105568450_105572203_105572245_105574422_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586611_105586732_105587017_105587092_105591224
ENSMUSG00000056536.15_4	chr1	-	6284	30	NIC	ENSMUSG00000056536.15	novel	6759	31	NA	NA	9	-346	combination_of_known_junctions	FALSE	canonical	3	20	junction_28	13.8006014103214	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTAGAAGGTTTAAAGGT	NA	False	NA	NA	False	AATAAA	-45	NA	105591378	105446496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_105449853_105474388_105474442_105476789_105476833_105480096_105480171_105481788_105481865_105482168_105482225_105485187_105485275_105485712_105485816_105493872_105493976_105507646_105507756_105512713_105512823_105515704_105515797_105516773_105516867_105516950_105517051_105519346_105519487_105525392_105525576_105526773_105526853_105565234_105565291_105565907_105566001_105568389_105568450_105572203_105572245_105574422_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105587017_105587092_105591224
ENSMUSG00000056537.12_1	chrX	-	3631	1	ISM	ENSMUSG00000056537.12	ENSMUST00000121153.8	7439	5	20483	8	20483	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGATCATTTGTGCTTTT	NA	False	NA	-9	True	AATAAA	-8	NA	103004407	103000776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_103000800_103004400
ENSMUSG00000056537.12_2	chrX	-	7405	5	FSM	ENSMUSG00000056537.12	ENSMUST00000070705.6	7429	5	16	8	16	-8	multi-exon	FALSE	canonical	3	128	junction_4	35.6300435026397	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGATCATTTGTGCTTTT	2389	False	NA	-9	True	AATAAA	-8	NA	103024874	103000776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024678
ENSMUSG00000056537.12_6	chrX	-	7415	5	FSM	ENSMUSG00000056537.12	ENSMUST00000121153.8	7439	5	16	8	16	-8	multi-exon	FALSE	canonical	3	84	junction_4	53.7261575026541	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGATCATTTGTGCTTTT	2389	False	NA	-9	True	AATAAA	-8	NA	103024874	103000776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024668
ENSMUSG00000056579.19_0	chr11	-	4800	3	FSM	ENSMUSG00000056579.19	ENSMUST00000153313.9	5112	3	306	6	58	-6	multi-exon	FALSE	canonical	3	2126	junction_1	263	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACTTTGAGTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	3597224	3589799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3593180_3594771_3595524_3596556
ENSMUSG00000056579.19_1	chr11	-	6106	2	FSM	ENSMUSG00000056579.19	ENSMUST00000132077.4	6719	2	597	16	193	-7	multi-exon	FALSE	canonical	3	2652	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTACTTTGAGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	3596939	3589800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3595524_3596556
ENSMUSG00000056579.19_2	chr11	-	2591	1	ISM	ENSMUSG00000056579.19	ENSMUST00000132077.4	6719	2	5146	15	4742	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACTTTGAGTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	3592390	3589799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_3589800_3592400
ENSMUSG00000056579.19_3	chr11	-	3631	2	FSM	ENSMUSG00000056579.19	ENSMUST00000226724.2	3853	2	2884	-2662	2110	-6	multi-exon	FALSE	canonical	3	2126	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACTTTGAGTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	3595022	3589799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_3593180_3594771
ENSMUSG00000056592.15_1	chr7	+	3486	5	FSM	ENSMUSG00000056592.15	ENSMUST00000107972.8	3495	5	3	6	3	-6	multi-exon	FALSE	canonical	1	5	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAGTTTATTGTACATT	NA	False	NA	NA	False	NA	NA	NA	43211682	43224879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43211846_43214037_43214268_43216691_43216819_43217068_43217168_43222012
ENSMUSG00000056592.15_5	chr7	+	2518	1	ISM	ENSMUSG00000056592.15	ENSMUST00000107972.8	3495	5	10682	6	8154	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAGTTTATTGTACATT	595	False	NA	NA	False	NA	NA	NA	43222361	43224879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43222400_43224900
ENSMUSG00000056596.9_0	chr4	-	1645	2	FSM	ENSMUSG00000056596.9	ENSMUST00000125541.2	1654	2	5	4	5	-4	multi-exon	FALSE	canonical	3	7	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGAGACGTGTGGTTTT	NA	False	NA	-8	True	AATAAA	-14	NA	133225856	133218414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133219142_133224938
ENSMUSG00000056596.9_1	chr4	-	1438	3	FSM	ENSMUSG00000056596.9	ENSMUST00000123169.2	687	3	-735	-16	96	-2	multi-exon	FALSE	canonical	1	1	junction_1	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAGACGTGTGGTTTTAA	NA	False	NA	-6	True	AATAAA	-16	NA	133225765	133218412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_133218929_133219046_133219142_133224938
ENSMUSG00000056598.17_1	chr11	+	1870	2	ISM	ENSMUSG00000056598.17	ENSMUST00000070805.13	2061	7	-117	16254	-117	-16254	5prime_fragment	FALSE	canonical	2	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	3304	False	NA	NA	False	AATACA	-22	NA	60244037	60246576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60244259_60244927
ENSMUSG00000056598.17_6	chr11	+	2453	8	FSM	ENSMUSG00000056598.17	ENSMUST00000094140.9	2438	8	-15	0	-15	0	multi-exon	FALSE	canonical	2	6	junction_1	9.45235096552758	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTCCAAAGGACTCTGTG	3406	False	NA	NA	False	NA	NA	NA	60244139	60268104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60244259_60244927_60245027_60249443_60249643_60254289_60254407_60255691_60255859_60261294_60261442_60265903_60266024_60266619
ENSMUSG00000056602.14_1	chr5	+	4434	32	NNC	ENSMUSG00000056602.14	novel	592	4	NA	NA	-38	-3485	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_31	3.83857413694026	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTTGGCATTGTTTAAA	1237	False	NA	NA	False	AATAAA	-29	NA	150119892	150333668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_150120201_150233734_150233935_150249595_150249650_150263817_150263958_150269017_150269109_150269315_150269396_150269510_150269592_150277938_150278108_150282263_150282357_150282454_150282554_150284579_150284682_150292933_150293038_150293591_150293701_150295986_150296074_150302273_150302446_150304262_150304396_150305080_150305189_150309449_150309709_150312237_150312421_150314100_150314188_150317442_150317703_150318452_150318643_150319207_150319333_150321662_150321721_150322663_150322756_150322996_150323170_150324257_150324419_150325064_150325176_150326906_150327062_150328407_150328508_150328714_150328887_150333490
ENSMUSG00000056602.14_11	chr5	+	3727	15	ISM	ENSMUSG00000056602.14	ENSMUST00000239118.2	10618	61	150337	2	-5405	-2	3prime_fragment	FALSE	canonical	3	26	junction_1	6.43650304346789	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTGTATTTTTATATG	NA	False	NA	7	True	ATTAAA	-13	NA	150369189	150421216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150369380_150372884_150373065_150374523_150374686_150377964_150378040_150381209_150381381_150389708_150389907_150390249_150390412_150393141_150393309_150394885_150395076_150401390_150401541_150402237_150402337_150404957_150405042_150414542_150414654_150419158_150419362_150419631
ENSMUSG00000056602.14_12	chr5	+	2208	6	ISM	ENSMUSG00000056602.14	ENSMUST00000201196.2	2204	11	20213	-924	-9253	-28	3prime_fragment	FALSE	canonical	3	27	junction_3	5.35163526410386	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGTGAAATTAAAATATTT	NA	False	NA	-19	True	AAAAAG	-37	NA	150401388	150421190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150401541_150402237_150402337_150404957_150405042_150414542_150414654_150419158_150419362_150419631
ENSMUSG00000056602.14_16	chr5	+	1267	1	FSM	ENSMUSG00000056602.14	ENSMUST00000201628.2	1761	1	604	-110	604	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGATGTTTGTATTTT	1517	False	NA	1	True	ATTAAA	-7	NA	150419943	150421210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_150419900_150421200
ENSMUSG00000056602.14_19	chr5	+	5530	25	ISM	ENSMUSG00000056602.14	ENSMUST00000239118.2	10618	61	130908	1	-3506	-1	3prime_fragment	FALSE	canonical	3	15	junction_7	8.5647047039969	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTATTTTTATATGT	NA	False	NA	8	True	ATTAAA	-14	NA	150349760	150421217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150349817_150350492_150350597_150351517_150351704_150353190_150353390_150355133_150355256_150356981_150357170_150358233_150358329_150360165_150360798_150362175_150362274_150362950_150363122_150369238_150369380_150372884_150373065_150374523_150374686_150377964_150378040_150381209_150381381_150389708_150389907_150390249_150390412_150393141_150393309_150394885_150395076_150401390_150401541_150402237_150402337_150404957_150405042_150414542_150414654_150419158_150419362_150419631
ENSMUSG00000056602.14_2	chr5	+	1193	7	NIC	ENSMUSG00000056602.14	novel	592	4	NA	NA	-52	427	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	2.26691175145591	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTCTCTCTTCTCAAATA	1223	False	NA	NA	False	AAGAAA	-28	NA	150119878	150269816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_150120201_150233734_150233935_150249595_150249650_150263817_150263958_150269017_150269109_150269315_150269396_150269510
ENSMUSG00000056602.14_20	chr5	+	5233	23	ISM	ENSMUSG00000056602.14	ENSMUST00000239118.2	10618	61	132731	72	-1683	46	3prime_fragment	FALSE	canonical	3	15	junction_5	8.55463723262525	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAGAGAAAAAAAAAG	NA	False	NA	-63	True	NA	NA	NA	150351583	150421146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150351704_150353190_150353390_150355133_150355256_150356981_150357170_150358233_150358329_150360165_150360798_150362175_150362274_150362950_150363122_150369238_150369380_150372884_150373065_150374523_150374686_150377964_150378040_150381209_150381381_150389708_150389907_150390249_150390412_150393141_150393309_150394885_150395076_150401390_150401541_150402237_150402337_150404957_150405042_150414542_150414654_150419158_150419362_150419631
ENSMUSG00000056602.14_22	chr5	+	3093	11	FSM	ENSMUSG00000056602.14	ENSMUST00000201196.2	2204	11	62	-951	62	-1	multi-exon	FALSE	canonical	3	26	junction_5	6.73498329619309	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTATTTTTATATGT	NA	False	NA	8	True	ATTAAA	-14	NA	150381237	150421217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_150381381_150389708_150389907_150390249_150390412_150393141_150393309_150394885_150395076_150401390_150401541_150402237_150402337_150404957_150405042_150414542_150414654_150419158_150419362_150419631
ENSMUSG00000056602.14_24	chr5	+	2880	10	ISM	ENSMUSG00000056602.14	ENSMUST00000201196.2	2204	11	8534	-882	5599	48	3prime_fragment	FALSE	canonical	3	26	junction_4	6.12825877028341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAGAAAAAAAAAGAC	NA	False	NA	-61	True	NA	NA	NA	150389709	150421148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150389907_150390249_150390412_150393141_150393309_150394885_150395076_150401390_150401541_150402237_150402337_150404957_150405042_150414542_150414654_150419158_150419362_150419631
ENSMUSG00000056602.14_3	chr5	+	10624	61	NIC	ENSMUSG00000056602.14	novel	4379	20	NA	NA	-36	-3	combination_of_known_junctions	FALSE	canonical	3	8	junction_34	8.06611568366226	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTTTGTATTTTTATAT	1239	False	NA	6	True	ATTAAA	-12	NA	150119894	150421215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_150120201_150233734_150233935_150249595_150249650_150263817_150263958_150269017_150269109_150269315_150269396_150269510_150269592_150277938_150278108_150282263_150282357_150282454_150282554_150284579_150284682_150292933_150293038_150293591_150293701_150295986_150296074_150302273_150302446_150304262_150304396_150305080_150305189_150309449_150309709_150312237_150312421_150314100_150314188_150317442_150317703_150318452_150318643_150319207_150319333_150321662_150321721_150322663_150322756_150322996_150323170_150324257_150324419_150325064_150325176_150326906_150327062_150328407_150328508_150328714_150328887_150336648_150336906_150337968_150338116_150339652_150339822_150341926_150342018_150346174_150346258_150349665_150349817_150350492_150350597_150351517_150351704_150353190_150353390_150355133_150355256_150356981_150357170_150358233_150358329_150360165_150360798_150362175_150362274_150362950_150363122_150369238_150369380_150372884_150373065_150374523_150374686_150377964_150378040_150381209_150381381_150389708_150389907_150390249_150390412_150393141_150393309_150394885_150395076_150401390_150401541_150402237_150402337_150404957_150405042_150414542_150414654_150419158_150419362_150419631
ENSMUSG00000056602.14_5	chr5	+	186	1	ISM	ENSMUSG00000056602.14	ENSMUST00000203000.4	3670	7	229517	636	-51469	-636	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	150271648	150271834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150271600_150271800
ENSMUSG00000056602.14_7	chr5	+	4862	20	ISM	ENSMUSG00000056602.14	ENSMUST00000239118.2	10618	61	138130	1	-3412	-1	3prime_fragment	FALSE	canonical	3	15	junction_2	8.6626526680075	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTATTTTTATATGT	NA	False	NA	8	True	ATTAAA	-14	NA	150356982	150421217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150357170_150358233_150358329_150360165_150360798_150362175_150362274_150362950_150363122_150369238_150369380_150372884_150373065_150374523_150374686_150377964_150378040_150381209_150381381_150389708_150389907_150390249_150390412_150393141_150393309_150394885_150395076_150401390_150401541_150402237_150402337_150404957_150405042_150414542_150414654_150419158_150419362_150419631
ENSMUSG00000056602.14_8	chr5	+	4427	18	ISM	ENSMUSG00000056602.14	ENSMUST00000239118.2	10618	61	141405	62	-137	56	3prime_fragment	FALSE	canonical	3	15	junction_1	8.08860961700663	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGACATGTTGAT	NA	False	NA	-53	True	AAAAAG	-3	NA	150360257	150421156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_150360798_150362175_150362274_150362950_150363122_150369238_150369380_150372884_150373065_150374523_150374686_150377964_150378040_150381209_150381381_150389708_150389907_150390249_150390412_150393141_150393309_150394885_150395076_150401390_150401541_150402237_150402337_150404957_150405042_150414542_150414654_150419158_150419362_150419631
ENSMUSG00000056608.15_14	chr8	+	8120	26	ISM	ENSMUSG00000056608.15	ENSMUST00000209423.2	9419	38	64519	-1845	5300	0	3prime_fragment	FALSE	canonical	3	13	junction_2	6.61706883748386	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGATGTCAGCCTCCC	NA	False	NA	4	True	ATTAAA	-15	NA	91723490	91781136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91723612_91723704_91723961_91725123_91725335_91728247_91728444_91732341_91732510_91733158_91733339_91735347_91735459_91737239_91737437_91737883_91738084_91741726_91741887_91742462_91742553_91748393_91748498_91749442_91749561_91750164_91750223_91752007_91752051_91753295_91753516_91757109_91757313_91759966_91760873_91761532_91761694_91762953_91763227_91764034_91764204_91767675_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
ENSMUSG00000056608.15_19	chr8	+	6445	17	ISM	ENSMUSG00000056608.15	ENSMUST00000209423.2	9419	38	82783	-1838	23564	-7	3prime_fragment	FALSE	canonical	3	15	junction_9	6.45174395028197	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGACTACCCATGATGTCA	NA	False	NA	-3	True	ATTAAA	-8	NA	91741754	91781129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91741887_91742462_91742553_91748393_91748498_91749442_91749561_91750164_91750223_91752007_91752051_91753295_91753516_91757109_91757313_91759966_91760873_91761532_91761694_91762953_91763227_91764034_91764204_91767675_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
ENSMUSG00000056608.15_24	chr8	+	4092	6	ISM	ENSMUSG00000056608.15	ENSMUST00000209203.2	9213	37	105063	-1793	45844	-52	3prime_fragment	FALSE	canonical	3	23	junction_4	6.08604962188118	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAGAGCAAATGGAAGTT	4855	False	NA	-48	True	ATTAAA	-18	NA	91764034	91781084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91764204_91767675_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
ENSMUSG00000056608.15_25	chr8	+	3686	4	ISM	ENSMUSG00000056608.15	ENSMUST00000209203.2	9213	37	109887	-1842	50668	-3	3prime_fragment	FALSE	canonical	3	23	junction_2	6.23609564462324	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACCCATGATGTCAGCCT	9679	False	NA	1	True	ATTAAA	-12	NA	91768858	91781133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91768908_91769469_91769599_91775733_91775839_91777730
ENSMUSG00000056608.15_26	chr8	+	3554	3	ISM	ENSMUSG00000056608.15	ENSMUST00000209203.2	9213	37	110584	-1845	51365	0	3prime_fragment	FALSE	canonical	3	23	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGATGTCAGCCTCCC	NA	False	NA	4	True	ATTAAA	-15	NA	91769555	91781136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91769599_91775733_91775839_91777730
ENSMUSG00000056608.15_28	chr8	+	2619	1	ISM	ENSMUSG00000056608.15	ENSMUST00000048665.8	12008	40	223537	9	60326	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCATGATGTCAGCCTCC	NA	False	NA	3	True	ATTAAA	-14	NA	91778516	91781135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91778500_91781100
ENSMUSG00000056608.15_40	chr8	+	4418	7	ISM	ENSMUSG00000056608.15	ENSMUST00000209203.2	9213	37	103980	-1844	44761	-1	3prime_fragment	FALSE	canonical	3	22	junction_1	6.60807586719967	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCATGATGTCAGCCTCC	3772	False	NA	3	True	ATTAAA	-14	NA	91762951	91781135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91763227_91764034_91764204_91767675_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
ENSMUSG00000056608.15_41	chr8	+	4306	7	ISM	ENSMUSG00000056608.15	ENSMUST00000048665.8	12008	40	208037	8	44826	0	3prime_fragment	FALSE	canonical	3	14	junction_1	8.59586463881842	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGATGTCAGCCTCCC	3837	False	NA	4	True	ATTAAA	-15	NA	91763016	91781136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91763179_91764034_91764204_91767675_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
ENSMUSG00000056608.15_42	chr8	+	3913	5	ISM	ENSMUSG00000056608.15	ENSMUST00000209203.2	9213	37	108766	-1845	49547	0	3prime_fragment	FALSE	canonical	3	23	junction_3	5.40254569624358	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGATGTCAGCCTCCC	8558	False	NA	4	True	ATTAAA	-15	NA	91767737	91781136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
ENSMUSG00000056612.8_0	chr19	+	931	4	FSM	ENSMUSG00000056612.8	ENSMUST00000070850.8	999	4	62	6	62	-3	multi-exon	FALSE	canonical	3	3100	junction_3	78.5295415043848	1208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAACAGGCTTGGCTGGT	1642	False	NA	NA	False	AATAAA	-23	NA	6952397	6954686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6952875_6953911_6953996_6954225_6954259_6954349
ENSMUSG00000056629.17_0	chr19	-	637	6	FSM	ENSMUSG00000056629.17	ENSMUST00000070878.9	642	6	-4	9	-4	-3	multi-exon	FALSE	canonical	3	194	junction_5	200.859752065963	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCCCCAAGAGTGAGTC	NA	False	NA	-12	True	TTTAAA	-26	NA	6957812	6955117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6957761
ENSMUSG00000056629.17_1	chr19	-	599	6	FSM	ENSMUSG00000056629.17	ENSMUST00000177752.9	664	6	63	2	2	1	multi-exon	FALSE	canonical	3	285	junction_5	164.60571071503	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCAAGAGTGAGTCTGTA	NA	False	NA	-8	True	TTTAAA	-30	NA	6957806	6955113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956510_6957761
ENSMUSG00000056629.17_5	chr19	-	588	5	ISM	ENSMUSG00000056629.17	ENSMUST00000238181.2	1526	6	1071	3	686	-3	3prime_fragment	FALSE	canonical	3	677	junction_3	18.1865334794732	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCCCCAAGAGTGAGTC	NA	False	NA	-12	True	TTTAAA	-26	NA	6956547	6955117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340
ENSMUSG00000056643.6_0	chr6	-	3076	3	FSM	ENSMUSG00000056643.6	ENSMUST00000070890.6	1653	3	-18	-1405	-18	1405	multi-exon	FALSE	canonical	2	3	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTTGGTCATCCAGCT	NA	False	NA	NA	False	NA	NA	NA	90302185	90283925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_90286790_90295240_90295324_90302056
ENSMUSG00000056665.3_0	chr15	+	1496	2	FSM	ENSMUSG00000056665.3	ENSMUST00000070923.3	1784	2	18	270	18	-270	multi-exon	FALSE	canonical	3	79	junction_1	0	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCGCGTGTGCCGGGGAG	4658	False	NA	9	True	ATTAAA	-10	NA	74593070	74596218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_74593657_74595308
ENSMUSG00000056665.3_1	chr15	+	645	1	ISM	ENSMUSG00000056665.3	ENSMUST00000070923.3	1784	2	2521	270	2521	-270	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCGCGTGTGCCGGGGAG	7161	False	NA	9	True	ATTAAA	-10	NA	74595573	74596218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_74595600_74596200
ENSMUSG00000056666.14_0	chr6	+	1961	11	FSM	ENSMUSG00000056666.14	ENSMUST00000070597.13	3027	11	128	938	-25	45	multi-exon	FALSE	canonical	3	404	junction_1	54.9894535342915	643	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGTGTTGTTAAGTCAAG	NA	False	NA	16	True	TATAAA	-21	NA	72575585	72584470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
ENSMUSG00000056671.8_5	chr18	-	834	7	FSM	ENSMUSG00000056671.8	ENSMUST00000235606.2	868	7	28	6	3	-6	multi-exon	FALSE	canonical	3	300	junction_2	31.5722275988812	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACATCTATGCTTTCTCC	NA	False	NA	-20	True	AATAAA	-17	NA	42084279	42008670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
ENSMUSG00000056671.8_7	chr18	-	760	6	NIC	ENSMUSG00000056671.8	novel	868	7	NA	NA	3	-6	combination_of_known_splicesites	FALSE	canonical	3	17	junction_4	138.005217292681	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACATCTATGCTTTCTCC	NA	False	NA	-20	True	AATAAA	-17	NA	42084279	42008670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42070698_42070757_42084165
ENSMUSG00000056679.14_0	chrX	-	3036	1	ISM	ENSMUSG00000056679.14	ENSMUST00000070316.12	4855	3	22068	3	22068	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTTGCTCTGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	151129632	151126596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_151126600_151129600
ENSMUSG00000056679.14_1	chrX	-	1016	3	FSM	ENSMUSG00000056679.14	ENSMUST00000137840.2	998	3	-24	6	-24	-6	multi-exon	FALSE	canonical	2	6	junction_1	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAATTATCTGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	151151724	151150017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_151150266_151150416_151150507_151151046
ENSMUSG00000056687.10_2	chr11	-	1493	2	FSM	ENSMUSG00000056687.10	ENSMUST00000070956.4	2765	2	412	860	1	-456	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAAATAATAGGCGTATG	NA	False	NA	NA	False	AATAAA	-11	NA	109254068	109246463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_109247820_109253931
ENSMUSG00000056692.14_0	chr17	-	2140	1	ISM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	67227	24	67054	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAAAAAACCCCGCC	NA	False	NA	-25	True	ATTAAA	-10	NA	27972372	27970232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27970200_27972400
ENSMUSG00000056692.14_1	chr17	-	3776	5	FSM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	90	26	7	-15	multi-exon	FALSE	canonical	3	33	junction_4	5.43139024560011	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACACAAAAAAAAAAACCCCG	NA	False	NA	-27	True	ATTAAA	-8	NA	28039509	27970234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27972970_27986884_27987214_28005044_28005243_28012882_28013038_28039150
ENSMUSG00000056692.14_2	chr17	-	3386	4	FSM	ENSMUSG00000056692.14	ENSMUST00000233508.2	1348	4	-20	-2018	9	-13	multi-exon	FALSE	canonical	2	6	junction_1	17.3781471969828	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAAAAAACCCCGCC	NA	False	NA	-25	True	ATTAAA	-10	NA	28039446	27970232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27972970_28005044_28005243_28012882_28013038_28039150
ENSMUSG00000056692.14_3	chr17	-	3161	3	ISM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	34462	22	34289	-11	3prime_fragment	FALSE	canonical	3	38	junction_2	1.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAACCCCGCCTT	3429	False	NA	-23	True	ATTAAA	-12	NA	28005137	27970230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27972970_27986884_27987214_28005044
ENSMUSG00000056692.14_4	chr17	-	3443	5	FSM	ENSMUSG00000056692.14	ENSMUST00000114859.9	3573	5	118	12	28	-12	multi-exon	FALSE	canonical	2	6	junction_1	15.5463018110418	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAAAAAACCCCGCCT	NA	False	NA	-24	True	ATTAAA	-11	NA	28039398	27970231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27972970_27987109_27987214_28005044_28005243_28012882_28013038_28039150
ENSMUSG00000056692.14_5	chr17	-	2996	2	ISM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	52458	22	52285	-11	3prime_fragment	FALSE	canonical	3	41	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAACCCCGCCTT	NA	False	NA	-23	True	ATTAAA	-12	NA	27987141	27970230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27972970_27986884
ENSMUSG00000056692.14_6	chr17	-	3329	4	ISM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	26654	22	26481	-11	3prime_fragment	FALSE	canonical	3	38	junction_2	4.18993502999218	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAACCCCGCCTT	NA	False	NA	-23	True	ATTAAA	-12	NA	28012945	27970230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27972970_27986884_27987214_28005044_28005243_28012882
ENSMUSG00000056698.12_0	chr6	-	2183	12	FSM	ENSMUSG00000056698.12	ENSMUST00000070990.8	2122	12	-60	-1	-8	1	multi-exon	FALSE	canonical	3	36	junction_11	7.42677755109095	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTCTGGTATTTTCTTCC	NA	False	NA	-10	True	AATAAA	-12	NA	72575386	72542915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
ENSMUSG00000056698.12_1	chr6	-	2040	11	ISM	ENSMUSG00000056698.12	ENSMUST00000114069.8	2164	13	3390	4	69	-4	3prime_fragment	FALSE	canonical	3	41	junction_4	6.58483105326173	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATTTTCTTCCAAGATGA	NA	False	NA	-3	True	AATAAA	-19	NA	72571935	72542908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722
ENSMUSG00000056698.12_10	chr6	-	2816	12	NIC	ENSMUSG00000056698.12	novel	2122	12	NA	NA	3	0	intron_retention	FALSE	canonical	0	0	junction_11	15.6326634099649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTCTGGTATTTTCTTC	NA	False	NA	-11	True	AATAAA	-11	NA	72575322	72542916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72574606
ENSMUSG00000056698.12_2	chr6	-	2183	14	NIC	ENSMUSG00000056698.12	novel	2164	13	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	2	5	junction_12	18.5395786449251	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTCTTCCAAGATGAAG	NA	False	NA	-1	True	AATAAA	-21	NA	72575324	72542906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72573418_72573450_72574606_72574629_72575304
ENSMUSG00000056698.12_3	chr6	-	2208	13	FSM	ENSMUSG00000056698.12	ENSMUST00000114069.8	2164	13	-49	5	4	-5	multi-exon	FALSE	canonical	1	3	junction_12	16.532795690183	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATTTTCTTCCAAGATG	NA	False	NA	-4	True	AATAAA	-18	NA	72575374	72542909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72573418_72573450_72575304
ENSMUSG00000056698.12_4	chr6	-	1425	6	ISM	ENSMUSG00000056698.12	ENSMUST00000070990.8	2122	12	20744	-1	17422	1	3prime_fragment	FALSE	canonical	3	41	junction_4	8.43800924389159	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTCTGGTATTTTCTTCC	3220	False	NA	-10	True	AATAAA	-12	NA	72554582	72542915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547
ENSMUSG00000056698.12_6	chr6	-	1526	11	FSM	ENSMUSG00000056698.12	ENSMUST00000141833.8	2509	11	4	979	4	799	multi-exon	FALSE	canonical	3	36	junction_10	7.7	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACCACCGTGCCAGGCT	NA	False	NA	NA	False	NA	NA	NA	72575374	72545511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
ENSMUSG00000056708.6_0	chr1	-	2101	1	FSM	ENSMUSG00000056708.6	ENSMUST00000055322.6	3276	1	6	1169	6	-1169	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTCCACTGCCTGTTTG	NA	False	NA	-8	True	ATTAAA	-10	NA	154975376	154973275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_154973300_154975400
ENSMUSG00000056724.16_0	chr9	-	8615	54	FSM	ENSMUSG00000056724.16	ENSMUST00000167320.8	8803	54	182	6	163	-6	multi-exon	FALSE	canonical	2	5	junction_38	4.32878054960468	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCGGTTTCTTGAGT	NA	False	NA	-4	True	AATAAA	-17	NA	110483047	110453862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_110454295_110454396_110454533_110454801_110454951_110455030_110455190_110455284_110455402_110455603_110455699_110455800_110455974_110456145_110456256_110456336_110456427_110456874_110456992_110457059_110457158_110457254_110457373_110457461_110457572_110457686_110457818_110457945_110458087_110458183_110458309_110458637_110458734_110458837_110459155_110459257_110459422_110459851_110459988_110460068_110460194_110460409_110460568_110460687_110460838_110460925_110461271_110461357_110461496_110461802_110461963_110462044_110462224_110462749_110463266_110463431_110463539_110463780_110463941_110464113_110464273_110464365_110464520_110464681_110464785_110464928_110465089_110465362_110465497_110465629_110465805_110465958_110466052_110466142_110466226_110466431_110466754_110466946_110467067_110467159_110467293_110467372_110467975_110468361_110468461_110468847_110468932_110470478_110470560_110470838_110470946_110471078_110471362_110471452_110471539_110472779_110472863_110473076_110473196_110473287_110473370_110473484_110473614_110473697_110473787_110482964
ENSMUSG00000056724.16_1	chr9	-	3258	22	ISM	ENSMUSG00000056724.16	ENSMUST00000130024.2	6180	40	7157	-248	420	-6	3prime_fragment	TRUE	canonical	2	7	junction_5	4.06968773699457	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCGGTTTCTTGAGT	1916	False	NA	-4	True	AATAAA	-17	NA	110460528	110453862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_110454295_110454396_110454533_110454801_110454951_110455030_110455190_110455284_110455402_110455603_110455699_110455800_110455974_110456145_110456256_110456336_110456427_110456874_110456992_110457059_110457158_110457254_110457373_110457461_110457572_110457686_110457818_110457945_110458087_110458183_110458309_110458637_110458734_110458837_110459155_110459257_110459422_110459851_110459988_110460068_110460194_110460409
ENSMUSG00000056724.16_13	chr9	-	5722	32	NIC	ENSMUSG00000056724.16	novel	8803	54	NA	NA	-43	-174	combination_of_known_junctions	FALSE	canonical	2	5	junction_17	4.07729685401934	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGGTGGTGCACACCT	NA	False	NA	NA	False	AATAAA	-17	NA	110483272	110460307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_110460568_110460687_110460838_110460925_110461271_110461357_110461496_110461802_110461963_110462044_110462224_110462749_110463266_110463431_110463539_110463780_110463941_110464113_110464273_110464365_110464520_110464681_110464785_110464928_110465089_110465362_110465497_110465629_110465805_110465958_110466052_110466142_110466226_110466431_110466754_110466946_110467067_110467159_110467293_110467372_110467975_110468361_110468461_110468847_110468932_110470838_110470946_110471078_110471362_110471452_110471539_110472779_110472863_110473076_110473196_110473287_110473370_110473484_110473614_110473697_110473787_110482964
ENSMUSG00000056724.16_19	chr9	-	4181	27	ISM	ENSMUSG00000056724.16	ENSMUST00000133191.8	8782	54	21094	6	-1016	-6	3prime_fragment	TRUE	canonical	2	7	junction_5	3.83073833784269	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCGGTTTCTTGAGT	309	False	NA	-4	True	AATAAA	-17	NA	110462135	110453862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_110454295_110454396_110454533_110454801_110454951_110455030_110455190_110455284_110455402_110455603_110455699_110455800_110455974_110456145_110456256_110456336_110456427_110456874_110456992_110457059_110457158_110457254_110457373_110457461_110457572_110457686_110457818_110457945_110458087_110458183_110458309_110458637_110458734_110458837_110459155_110459257_110459422_110459851_110459988_110460068_110460194_110460409_110460568_110460687_110460838_110460925_110461271_110461357_110461496_110461802_110461963_110462044
ENSMUSG00000056724.16_3	chr9	-	1089	6	ISM	ENSMUSG00000056724.16	ENSMUST00000131017.8	3303	23	5420	-248	2253	-6	3prime_fragment	FALSE	canonical	2	7	junction_5	5.8309518948453	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCGGTTTCTTGAGT	6745	False	NA	-4	True	AATAAA	-17	NA	110455699	110453862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_110454295_110454396_110454533_110454801_110454951_110455030_110455190_110455284_110455402_110455603
ENSMUSG00000056724.16_5	chr9	-	1314	8	ISM	ENSMUSG00000056724.16	ENSMUST00000131017.8	3303	23	4921	-248	1754	-6	3prime_fragment	FALSE	canonical	2	7	junction_5	5.03862631101383	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCGGTTTCTTGAGT	6246	False	NA	-4	True	AATAAA	-17	NA	110456198	110453862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_110454295_110454396_110454533_110454801_110454951_110455030_110455190_110455284_110455402_110455603_110455699_110455800_110455974_110456145
ENSMUSG00000056724.16_7	chr9	-	8562	53	NIC	ENSMUSG00000056724.16	novel	8803	54	NA	NA	135	-6	combination_of_known_junctions	FALSE	canonical	2	5	junction_38	4.27299729898812	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCGGTTTCTTGAGT	NA	False	NA	-4	True	AATAAA	-17	NA	110483075	110453862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_110454295_110454396_110454533_110454801_110454951_110455030_110455190_110455284_110455402_110455603_110455699_110455800_110455974_110456145_110456256_110456336_110456427_110456874_110456992_110457059_110457158_110457254_110457373_110457461_110457572_110457686_110457818_110457945_110458087_110458183_110458309_110458637_110458734_110458837_110459155_110459257_110459422_110459851_110459988_110460068_110460194_110460409_110460568_110460687_110460838_110460925_110461271_110461357_110461496_110461802_110461963_110462044_110462224_110462749_110463266_110463431_110463539_110463780_110463941_110464113_110464273_110464365_110464520_110464681_110464785_110464928_110465089_110465362_110465497_110465629_110465805_110465958_110466052_110466142_110466226_110466431_110466754_110466946_110467067_110467159_110467293_110467372_110467975_110468361_110468461_110468847_110468932_110470838_110470946_110471078_110471362_110471452_110471539_110472779_110472863_110473076_110473196_110473287_110473370_110473484_110473614_110473697_110473787_110482964
ENSMUSG00000056724.16_9	chr9	-	4919	30	ISM	ENSMUSG00000056724.16	ENSMUST00000167320.8	8803	54	19422	6	-290	-6	3prime_fragment	FALSE	canonical	2	7	junction_5	3.85868077978541	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTTCGGTTTCTTGAGT	NA	False	NA	-4	True	AATAAA	-17	NA	110463807	110453862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_110454295_110454396_110454533_110454801_110454951_110455030_110455190_110455284_110455402_110455603_110455699_110455800_110455974_110456145_110456256_110456336_110456427_110456874_110456992_110457059_110457158_110457254_110457373_110457461_110457572_110457686_110457818_110457945_110458087_110458183_110458309_110458637_110458734_110458837_110459155_110459257_110459422_110459851_110459988_110460068_110460194_110460409_110460568_110460687_110460838_110460925_110461271_110461357_110461496_110461802_110461963_110462044_110462224_110462749_110463266_110463431_110463539_110463780
ENSMUSG00000056737.15_0	chr6	+	1187	10	FSM	ENSMUSG00000056737.15	ENSMUST00000071044.13	1247	10	49	11	49	-9	multi-exon	TRUE	canonical	3	14	junction_1	22.7389913671443	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCCTGCTCTCTTCCTGT	NA	False	NA	1	True	AATAAA	-12	NA	72521422	72539955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_72521450_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUSG00000056737.15_1	chr6	+	1234	10	FSM	ENSMUSG00000056737.15	ENSMUST00000114071.8	1400	10	157	9	-2	-7	multi-exon	FALSE	canonical	3	46	junction_1	14.6439217576592	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGCTCTCTTCCTGTGT	NA	False	NA	3	True	AATAAA	-14	NA	72526412	72539957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_72526485_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUSG00000056737.15_2	chr6	+	1397	11	NIC	ENSMUSG00000056737.15	novel	1400	10	NA	NA	-25	-6	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	31.2680347959382	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTCTCTTCCTGTGTG	NA	False	NA	4	True	AATAAA	-15	NA	72526389	72539958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_72526485_72526712_72526852_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUSG00000056737.15_4	chr6	+	1279	10	NIC	ENSMUSG00000056737.15	novel	515	5	NA	NA	98	-9	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	24.7026764181985	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCCTGCTCTCTTCCTGT	NA	False	NA	1	True	AATAAA	-12	NA	72526732	72539955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_72526852_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUSG00000056738.12_0	chr2	+	4162	3	ISM	ENSMUSG00000056738.12	ENSMUST00000143346.8	3431	5	6439	-2	-2614	2	intron_retention	FALSE	canonical	0	0	junction_2	4.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTGTCTAATTATCTTT	1318	False	NA	NA	False	NA	NA	NA	129067327	129077526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_129067517_129067640_129067816_129073728
ENSMUSG00000056749.8_0	chr13	-	2019	2	FSM	ENSMUSG00000056749.8	ENSMUST00000071065.8	2026	2	4	3	4	-3	multi-exon	FALSE	canonical	3	64	junction_1	0	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTCCGGCTCTGTTCCA	NA	False	NA	-2	True	AATAAA	-16	NA	53135105	53121247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_53123058_53134896
ENSMUSG00000056749.8_1	chr13	-	1584	1	ISM	ENSMUSG00000056749.8	ENSMUST00000071065.8	2026	2	12274	7	12274	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACAGCTCCGGCTCTGT	NA	False	NA	-6	True	AATAAA	-12	NA	53122835	53121251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_53121300_53122800
ENSMUSG00000056758.15_0	chr10	-	3528	5	FSM	ENSMUSG00000056758.15	ENSMUST00000072777.14	3710	5	182	0	5	0	multi-exon	FALSE	canonical	1	2	junction_1	7.32717544487642	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGTGTGTGTGTTCAG	NA	False	NA	-13	True	AATAAA	-20	NA	120312192	120197179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_120200202_120210572_120210606_120298568_120298620_120309156_120309244_120311857
ENSMUSG00000056758.15_1	chr10	-	3181	4	ISM	ENSMUSG00000056758.15	ENSMUST00000072777.14	3710	5	3150	-7	2973	7	3prime_fragment	FALSE	canonical	1	2	junction_1	4.98887651569859	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTTCAGTTTCCTT	NA	False	NA	-6	True	AATAAA	-27	NA	120309224	120197172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_120200202_120210572_120210606_120298568_120298620_120309156
ENSMUSG00000056758.15_2	chr10	-	2026	1	ISM	ENSMUSG00000056758.15	ENSMUST00000072777.14	3710	5	113169	0	112992	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGTGTGTGTGTTCAG	2361	False	NA	-13	True	AATAAA	-20	NA	120199205	120197179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_120197200_120199200
ENSMUSG00000056763.17_14	chr1	+	4170	29	NIC	ENSMUSG00000056763.17	novel	1074	10	NA	NA	4	-3	combination_of_known_junctions	FALSE	canonical	2	10	junction_16	32.5407711296811	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTACCAGTGTCGGTTTC	NA	False	NA	1	True	AATAAA	-14	NA	10110005	10206990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
ENSMUSG00000056763.17_15	chr1	+	4324	30	NIC	ENSMUSG00000056763.17	novel	1074	10	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	2	91	junction_2	22.942776355976	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACTACCAGTGTCGGTTT	NA	False	NA	0	True	AATAAA	-13	NA	10110003	10206989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
ENSMUSG00000056763.17_16	chr1	+	4329	30	NIC	ENSMUSG00000056763.17	novel	1074	10	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	2	28	junction_1	29.4810041825238	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTACCAGTGTCGGTTTC	NA	False	NA	1	True	AATAAA	-14	NA	10110007	10206990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_10110113_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
ENSMUSG00000056763.17_2	chr1	+	4348	30	FSM	ENSMUSG00000056763.17	ENSMUST00000071087.12	4355	30	2	5	2	-5	multi-exon	FALSE	canonical	2	35	junction_1	28.6386316840114	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAACTACCAGTGTCGGTT	NA	False	NA	-1	True	AATAAA	-12	NA	10108443	10206988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_10108570_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
ENSMUSG00000056770.16_0	chr12	-	2584	13	FSM	ENSMUSG00000056770.16	ENSMUST00000071095.14	2755	13	0	171	0	64	multi-exon	FALSE	canonical	3	469	junction_9	51.1017503505397	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTAGGACTCGAGTCCTC	NA	False	NA	-3	True	ATTAAA	-23	NA	108145573	108072860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108145411
ENSMUSG00000056770.16_10	chr12	-	2705	14	NIC	ENSMUSG00000056770.16	novel	2755	13	NA	NA	2	64	combination_of_known_junctions	FALSE	canonical	3	36	junction_13	177.875064192647	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTAGGACTCGAGTCCTC	NA	False	NA	-3	True	ATTAAA	-23	NA	108145571	108072860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108133531_108133655_108145411
ENSMUSG00000056770.16_2	chr12	-	2434	12	NIC	ENSMUSG00000056770.16	novel	2755	13	NA	NA	1	64	combination_of_known_junctions	FALSE	canonical	3	90	junction_9	135.793596411783	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTAGGACTCGAGTCCTC	NA	False	NA	-3	True	ATTAAA	-23	NA	108145572	108072860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108129231_108129325_108131321_108131432_108145411
ENSMUSG00000056770.16_9	chr12	-	2563	11	NIC	ENSMUSG00000056770.16	novel	2755	13	NA	NA	-6	-24	combination_of_known_junctions	FALSE	canonical	3	72	junction_5	133.084334164469	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAAAGAGAAACCATGAC	NA	False	NA	-24	True	AGTAAA	-8	NA	108145579	108072713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108145411
ENSMUSG00000056820.8_0	chr8	+	2316	6	FSM	ENSMUSG00000056820.8	ENSMUST00000075896.7	2391	6	67	8	15	-8	multi-exon	FALSE	canonical	3	396	junction_1	21.35790251874	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATACAGCAGCCCTCTGG	5261	False	NA	1	True	AATAAA	-6	NA	125739802	125760923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755635_125759235
ENSMUSG00000056820.8_20	chr8	+	1390	1	ISM	ENSMUSG00000056820.8	ENSMUST00000075896.7	2391	6	19803	3	19751	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCAGCCCTCTGGTTAAG	NA	False	NA	6	True	AATAAA	-11	NA	125759538	125760928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125759500_125760900
ENSMUSG00000056832.15_0	chr6	+	4156	18	FSM	ENSMUSG00000056832.15	ENSMUST00000162554.8	4195	18	34	5	-22	-5	multi-exon	FALSE	canonical	3	24	junction_11	3.0576920984393	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATGTGTGTTCATGTTT	3519	False	NA	NA	False	ATTAAA	-18	NA	38358437	38404577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_38358529_38359010_38359149_38362367_38362461_38364531_38364647_38366916_38366967_38368353_38368500_38371956_38372129_38375217_38375293_38377981_38378085_38380401_38380458_38381416_38381471_38382871_38382936_38386349_38386439_38387708_38387793_38388958_38389029_38398473_38398581_38400284_38400419_38402062
ENSMUSG00000056832.15_7	chr6	+	2154	1	ISM	ENSMUSG00000056832.15	ENSMUST00000162554.8	4195	18	44020	5	33982	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATGTGTGTTCATGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	38402423	38404577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_38402400_38404600
ENSMUSG00000056832.15_9	chr6	+	3477	15	ISM	ENSMUSG00000056832.15	ENSMUST00000162554.8	4195	18	10	13501	10	-13501	5prime_fragment	FALSE	canonical	3	24	junction_11	3.16630860847164	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTGACTCATGACTACAG	3495	False	NA	NA	False	NA	NA	NA	38358413	38391081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_38358529_38359010_38359149_38362367_38362461_38364531_38364647_38366916_38366967_38368353_38368500_38371956_38372129_38375217_38375293_38377981_38378085_38380401_38380458_38381416_38381471_38382871_38382936_38386349_38386439_38387708_38387793_38388958
ENSMUSG00000056836.9_0	chr7	+	424	1	FSM	ENSMUSG00000056836.9	ENSMUST00000154478.3	395	1	-24	-5	-24	5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGAAAGACTAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-6	NA	39840336	39840760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_39840300_39840800
ENSMUSG00000056851.15_17	chr15	+	1442	14	NIC	ENSMUSG00000056851.15	novel	1215	14	NA	NA	-5	4	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	169.151939682124	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGCTTTTTCTTTGTGAA	2249	False	NA	9	True	ATTAAA	-9	NA	102379213	102407320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_20	chr15	+	1588	15	FSM	ENSMUSG00000056851.15	ENSMUST00000077037.13	2952	15	223	1141	8	39	multi-exon	FALSE	canonical	3	59	junction_1	143.98145076108	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGACTTACGTGGGTGT	2243	False	NA	44	True	ATTAAA	-44	NA	102379207	102407355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_23	chr15	+	1479	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	103	-6	-1	6	multi-exon	FALSE	canonical	3	59	junction_1	146.176678378513	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTTTTCTTTGTGAATA	2226	False	NA	11	True	ATTAAA	-11	NA	102379190	102407322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_63	chr15	+	1215	10	ISM	ENSMUSG00000056851.15	ENSMUST00000078404.15	3222	14	5879	1167	-2	13	3prime_fragment	FALSE	canonical	3	231	junction_2	123.970426580966	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTGTGAATAGAAACTG	122	False	NA	18	True	ATTAAA	-18	NA	102387050	102407329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_76	chr15	+	1050	9	ISM	ENSMUSG00000056851.15	ENSMUST00000078404.15	3222	14	10450	1173	-11	7	3prime_fragment	FALSE	canonical	3	231	junction_1	130.716056779571	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTTTCTTTGTGAATAG	464	False	NA	12	True	ATTAAA	-12	NA	102391621	102407323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_85	chr15	+	856	7	ISM	ENSMUSG00000056851.15	ENSMUST00000078404.15	3222	14	13228	1173	-14	7	3prime_fragment	FALSE	canonical	3	280	junction_4	107.616087190634	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTTTCTTTGTGAATAG	299	False	NA	12	True	ATTAAA	-12	NA	102394399	102407323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_87	chr15	+	647	3	FSM	ENSMUSG00000056851.15	ENSMUST00000230631.2	585	3	230	-292	230	27	multi-exon	FALSE	canonical	3	455	junction_1	89.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGGATGCCACAGTGAC	4085	False	NA	32	True	ATTAAA	-32	NA	102398185	102407343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_90	chr15	+	540	2	ISM	ENSMUSG00000056851.15	ENSMUST00000230631.2	585	3	1175	-304	1175	39	3prime_fragment	FALSE	canonical	3	634	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGACTTACGTGGGTGT	5030	False	NA	44	True	ATTAAA	-44	NA	102399130	102407355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102399239_102406923
ENSMUSG00000056851.15_91	chr15	+	333	1	ISM	ENSMUSG00000056851.15	ENSMUST00000077037.13	2952	15	28021	1158	9050	22	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGAAACTGGATGCCACA	33	False	NA	27	True	ATTAAA	-27	NA	102407005	102407338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102407000_102407300
ENSMUSG00000056870.10_1	chr1	+	2958	11	FSM	ENSMUSG00000056870.10	ENSMUST00000074525.10	3138	11	168	12	-14	0	multi-exon	FALSE	canonical	3	15	junction_7	3.104834939252	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATTAAACTGTATGA	NA	False	NA	NA	False	AATAAA	-8	NA	44590838	44835986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_44591033_44728303_44728376_44747776_44747839_44783633_44783706_44793502_44793602_44805173_44805312_44812430_44812548_44813212_44813306_44820127_44820267_44827607_44827703_44834109
ENSMUSG00000056870.10_5	chr1	+	1587	1	ISM	ENSMUSG00000056870.10	ENSMUST00000074525.10	3138	11	243729	12	106096	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATTAAACTGTATGA	NA	False	NA	NA	False	AATAAA	-8	NA	44834399	44835986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_44834400_44836000
ENSMUSG00000056899.11_10	chr12	+	748	6	NNC	ENSMUSG00000056899.11	novel	977	6	NA	NA	231	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	121.736436616159	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACTTGATTGTGTGTTGT	NA	False	NA	NA	False	ATTAAA	-12	NA	41074558	42002022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_41074633_41118308_41118446_41160838_41160945_41675546_41675613_41750437_41750543_42001762
ENSMUSG00000056899.11_3	chr12	+	790	7	NNC	ENSMUSG00000056899.11	novel	1147	7	NA	NA	13	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	111.945547278825	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACTTGATTGTGTGTTGT	NA	False	NA	NA	False	ATTAAA	-12	NA	41074101	42002022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_41074145_41074559_41074633_41118308_41118446_41160838_41160945_41675546_41675613_41750437_41750543_42001762
ENSMUSG00000056900.14_0	chr3	+	4582	20	NIC	ENSMUSG00000056900.14	novel	7580	21	NA	NA	23	1953	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	7.82176804831632	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACTTTGCAAACTCAA	NA	False	NA	-1	True	AATAAA	-8	NA	32871742	32989396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_32872022_32901958_32902020_32908704_32908827_32915919_32916063_32919930_32920116_32931026_32931122_32935469_32935658_32940256_32940329_32940643_32940738_32948912_32949039_32956103_32956258_32959438_32959614_32965721_32965811_32968247_32968371_32969136_32969164_32969817_32969962_32971607_32971766_32973065_32973220_32985806_32985892_32987288
ENSMUSG00000056900.14_1	chr3	+	3069	21	FSM	ENSMUSG00000056900.14	ENSMUST00000072312.12	7580	21	49	4462	24	315	multi-exon	FALSE	canonical	3	18	junction_4	5.5578772926361	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTACTGGTGGCATTGTG	NA	False	NA	NA	False	TTTAAA	-35	NA	32871743	32987758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_32872022_32891984_32892111_32901958_32902020_32908704_32908827_32915919_32916063_32919930_32920116_32931026_32931122_32935469_32935658_32940256_32940329_32940643_32940738_32948912_32949039_32956103_32956258_32959438_32959614_32965721_32965811_32968247_32968371_32969136_32969164_32969817_32969962_32971607_32971766_32973065_32973220_32985806_32985892_32987288
ENSMUSG00000056900.14_11	chr3	+	1798	1	ISM	ENSMUSG00000056900.14	ENSMUST00000072312.12	7580	21	115916	2812	18459	1965	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAATGTTGTAAAATC	NA	False	NA	11	True	AATAAA	-20	NA	32987610	32989408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_32987600_32989400
ENSMUSG00000056900.14_2	chr3	+	4497	19	NIC	ENSMUSG00000056900.14	novel	7580	21	NA	NA	19	1949	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	8.91471941354422	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTATAAAACTTTGCAAAC	NA	False	NA	-5	True	AATAAA	-4	NA	32871738	32989392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_32872022_32891984_32892111_32901958_32902020_32915919_32916063_32919930_32920116_32931026_32931122_32935469_32935658_32940256_32940329_32940643_32940738_32948912_32949039_32956103_32956258_32959438_32959614_32968247_32968371_32969136_32969164_32969817_32969962_32971607_32971766_32973065_32973220_32985806_32985892_32987288
ENSMUSG00000056900.14_20	chr3	+	900	8	NIC	ENSMUSG00000056900.14	novel	7580	21	NA	NA	-9609	-9	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	9.55755924781585	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGCCAAAAAAGAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	32959542	32987426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_32959614_32968247_32968371_32969136_32969164_32969817_32969962_32971607_32971766_32973065_32973220_32985806_32985892_32987288
ENSMUSG00000056917.14_12	chr19	-	3569	17	NIC	ENSMUSG00000056917.14	novel	3584	17	NA	NA	-1	6	combination_of_known_junctions	FALSE	canonical	2	4	junction_16	19.3761088392381	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGCAAACAACTCTATT	8123	False	NA	-16	True	AAAAAG	-11	NA	5713709	5701228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623_5711652_5713631
ENSMUSG00000056917.14_13	chr19	-	3824	18	FSM	ENSMUSG00000056917.14	ENSMUST00000071857.13	3812	18	-19	7	1	6	multi-exon	FALSE	canonical	2	3	junction_16	22.9642417985895	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGCAAACAACTCTATT	8125	False	NA	-16	True	AAAAAG	-11	NA	5713707	5701228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623_5711655_5712615_5712870_5713631
ENSMUSG00000056917.14_15	chr19	-	3522	16	FSM	ENSMUSG00000056917.14	ENSMUST00000169854.2	3583	16	26	35	-1	7	multi-exon	FALSE	canonical	3	8	junction_15	19.0524422464826	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAACAACAAGA	8123	False	NA	-35	True	AAGAAA	-18	NA	5713709	5701247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5713631
ENSMUSG00000056917.14_2	chr19	-	3568	17	FSM	ENSMUSG00000056917.14	ENSMUST00000164304.9	3584	17	3	13	3	6	multi-exon	FALSE	canonical	3	17	junction_16	17.2005632175228	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGCAAACAACTCTATT	8127	False	NA	-16	True	AAAAAG	-11	NA	5713705	5701228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623_5711655_5713631
ENSMUSG00000056917.14_22	chr19	-	1873	8	NIC	ENSMUSG00000056917.14	novel	3583	16	NA	NA	-215	7	intron_retention	FALSE	canonical	3	60	junction_3	9.36341120467082	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAACAACAAGA	NA	False	NA	-35	True	AAGAAA	-18	NA	5705080	5701247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574
ENSMUSG00000056917.14_25	chr19	-	3636	16	NIC	ENSMUSG00000056917.14	novel	3584	17	NA	NA	1	7	intron_retention	FALSE	canonical	3	9	junction_15	18.9743686763662	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAACAACAAGA	8145	False	NA	-35	True	AAGAAA	-18	NA	5713687	5701247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623_5711687_5713631
ENSMUSG00000056917.14_26	chr19	-	3625	16	NIC	ENSMUSG00000056917.14	novel	3584	17	NA	NA	0	7	intron_retention	FALSE	canonical	3	17	junction_15	17.6320415405843	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAACAACAAGA	8124	False	NA	-35	True	AAGAAA	-18	NA	5713708	5701247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623_5711655_5713631
ENSMUSG00000056917.14_3	chr19	-	1850	9	ISM	ENSMUSG00000056917.14	ENSMUST00000236006.2	3513	16	6546	16	-252	0	3prime_fragment	FALSE	canonical	3	60	junction_4	8.95038406997152	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAGAAGAAGCAAACAAC	NA	False	NA	-22	True	AAAAAG	-5	NA	5705117	5701234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574
ENSMUSG00000056917.14_4	chr19	-	1322	8	ISM	ENSMUSG00000056917.14	ENSMUST00000236006.2	3513	16	7354	9	556	-6	3prime_fragment	TRUE	canonical	3	60	junction_4	8.27832182540024	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGCAAACAACTCTATTT	NA	False	NA	-15	True	AAAAAG	-12	NA	5704309	5701227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026
ENSMUSG00000056917.14_7	chr19	-	2627	14	ISM	ENSMUSG00000056917.14	ENSMUST00000236006.2	3513	16	1930	30	1930	6	3prime_fragment	FALSE	canonical	3	47	junction_13	12.021676674207	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAGAAACAACAAG	9577	False	NA	-36	True	AAGAAA	-17	NA	5709733	5701248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623
ENSMUSG00000056917.14_8	chr19	-	3597	17	NIC	ENSMUSG00000056917.14	novel	3584	17	NA	NA	3	3	combination_of_known_junctions	FALSE	canonical	3	9	junction_16	18.506333375361	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGAAGCAAACAACTCT	8127	False	NA	-19	True	AAAAAG	-8	NA	5713705	5701231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623_5711687_5713631
ENSMUSG00000056919.10_0	chr9	-	4477	27	FSM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	248	2960	0	-2960	multi-exon	FALSE	canonical	3	45	junction_14	9.30228705097291	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATGAGCAGGTTCCATG	NA	False	NA	-13	True	ATTAAA	-7	NA	87137341	87074589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_87074976_87075625_87075761_87082033_87082133_87083750_87083893_87085693_87086338_87088895_87089109_87092849_87092955_87093709_87093874_87094904_87095032_87099120_87099227_87100557_87100671_87102503_87102645_87103150_87103379_87104096_87104228_87107731_87107994_87109206_87109481_87113430_87113513_87114031_87114224_87119885_87120003_87120406_87120438_87121867_87121987_87126330_87126399_87128201_87128386_87128668_87128816_87130427_87130552_87135984_87136102_87137315
ENSMUSG00000056919.10_1	chr9	-	4455	26	ISM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	1486	2958	1238	-2958	3prime_fragment	FALSE	canonical	3	45	junction_14	9.16951470907812	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGCAGGTTCCATGAC	NA	False	NA	-11	True	ATTAAA	-9	NA	87136103	87074587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_87074976_87075625_87075761_87082033_87082133_87083750_87083893_87085693_87086338_87088895_87089109_87092849_87092955_87093709_87093874_87094904_87095032_87099120_87099227_87100557_87100671_87102503_87102645_87103150_87103379_87104096_87104228_87107731_87107994_87109206_87109481_87113430_87113513_87114031_87114224_87119885_87120003_87120406_87120438_87121867_87121987_87126330_87126399_87128201_87128386_87128668_87128816_87130427_87130552_87135984
ENSMUSG00000056919.10_2	chr9	-	1174	5	ISM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	51620	2824	5994	-2824	3prime_fragment	FALSE	canonical	3	67	junction_2	2.8613807855649	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTCAGACCGGAAATCAG	NA	False	NA	NA	False	ATTAAA	-14	NA	87085969	87074453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_87074976_87075625_87075761_87082033_87082133_87083750_87083893_87085693
ENSMUSG00000056919.10_28	chr9	-	1256	6	ISM	ENSMUSG00000056919.10	ENSMUST00000144137.2	3131	12	-19	17986	-19	-17986	5prime_fragment	FALSE	canonical	3	55	junction_2	7.17216843081644	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87137360	87125759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_87126399_87128201_87128386_87128668_87128816_87130427_87130552_87135984_87136102_87137315
ENSMUSG00000056919.10_6	chr9	-	3825	6	ISM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	48670	565	3044	-565	3prime_fragment	FALSE	canonical	3	67	junction_2	2.71293199325011	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTAGCTAGTTTATTTT	NA	False	NA	NA	False	AATAAA	-10	NA	87088919	87072194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_87074976_87075625_87075761_87082033_87082133_87083750_87083893_87085693_87086338_87088895
ENSMUSG00000056938.17_0	chr11	+	2052	10	FSM	ENSMUSG00000056938.17	ENSMUST00000092559.13	2083	10	28	3	1	0	multi-exon	FALSE	canonical	3	48	junction_2	33.6455746177417	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102992535	103003023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102992615_102993507_102993923_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_1	chr11	+	2229	11	NIC	ENSMUSG00000056938.17	novel	2075	11	NA	NA	5	0	intron_retention	FALSE	canonical	3	42	junction_2	36.0373417443629	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102992542	103003023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102992615_102993507_102993972_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_15	chr11	+	2482	9	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	68	junction_1	25.5477494116409	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102992534	103003023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102992615_102993507_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_16	chr11	+	2068	10	NIC	ENSMUSG00000056938.17	novel	2075	11	NA	NA	19	0	intron_retention	FALSE	canonical	3	44	junction_2	34.5350063944784	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGCTGTCTGGGAACCC	NA	False	NA	5	True	ATTAAA	-15	NA	102992570	103003025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102992615_102993507_102993972_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_2	chr11	+	2191	11	NIC	ENSMUSG00000056938.17	novel	2075	11	NA	NA	-6	-3	intron_retention	FALSE	canonical	3	19	junction_2	40.6811995889993	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCAGTCTGCTGTCTGGG	NA	False	NA	0	True	ATTAAA	-10	NA	102992528	103003020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102992615_102993507_102993923_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_20	chr11	+	1728	10	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	-12	0	intron_retention	FALSE	canonical	3	19	junction_1	40.6569508733868	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102993887	103003023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102993923_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_22	chr11	+	1620	9	NIC	ENSMUSG00000056938.17	novel	2075	11	NA	NA	10	0	intron_retention	FALSE	canonical	3	44	junction_1	32.3138902022025	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGCTGTCTGGGAACCC	NA	False	NA	5	True	ATTAAA	-15	NA	102993911	103003025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102993972_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_23	chr11	+	1739	10	NIC	ENSMUSG00000056938.17	novel	807	7	NA	NA	-8	0	intron_retention	FALSE	canonical	3	42	junction_1	35.1346615814703	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102993925	103003023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102993972_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_25	chr11	+	1630	9	NIC	ENSMUSG00000056938.17	novel	1959	9	NA	NA	12	0	intron_retention	FALSE	canonical	3	12	junction_3	47.4919401056642	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102993913	103003023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102993972_102994060_102994196_102994351_102994471_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_28	chr11	+	1497	8	NIC	ENSMUSG00000056938.17	novel	1959	9	NA	NA	10	0	intron_retention	FALSE	canonical	3	12	junction_2	49.0289377275694	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102993911	103003023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_102993972_102994351_102994471_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056941.18_1	chr2	-	3051	10	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	2	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	59.527771296728	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATTTTTTATGGGTTTGT	NA	False	NA	NA	False	ATTAAA	-11	NA	153474649	153458855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_153460234_153460337_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
ENSMUSG00000056941.18_8	chr2	-	1264	9	FSM	ENSMUSG00000056941.18	ENSMUST00000071852.10	3210	9	45	1901	4	0	multi-exon	FALSE	canonical	3	166	junction_3	11.9373363863133	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCTCTGAATCCA	NA	False	NA	-19	True	ATTAAA	-17	NA	153474656	153460753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
ENSMUSG00000056941.18_9	chr2	-	1328	10	FSM	ENSMUSG00000056941.18	ENSMUST00000109782.2	1343	10	15	0	6	0	multi-exon	FALSE	canonical	3	10	junction_9	72.7254264636584	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCTCTGAATCCA	NA	False	NA	-19	True	ATTAAA	-17	NA	153474645	153460753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474107_153474183_153474513
ENSMUSG00000056952.14_0	chr6	+	3190	8	FSM	ENSMUSG00000056952.14	ENSMUST00000204753.3	2645	8	-431	-114	83	-3	multi-exon	FALSE	canonical	0	0	junction_7	1.95875845725744	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGAGCACATGTGGATAT	1058	False	NA	6	True	AATAAA	-12	NA	113674093	113688024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113674563_113674667_113675079_113679061_113679683_113680994_113681868_113684226_113684355_113686420_113686605_113687001_113687176_113687694
ENSMUSG00000056952.14_1	chr6	+	1978	6	ISM	ENSMUSG00000056952.14	ENSMUST00000204753.3	2645	8	4869	-114	-2384	-3	3prime_fragment	FALSE	canonical	0	0	junction_5	2.0591260281974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGAGCACATGTGGATAT	6358	False	NA	6	True	AATAAA	-12	NA	113679393	113688024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113679683_113680994_113681868_113684226_113684355_113686420_113686605_113687001_113687176_113687694
ENSMUSG00000056962.12_0	chr11	-	1571	6	FSM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	96	1	2	0	multi-exon	FALSE	canonical	3	250	junction_2	32.356761271796	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	-8	True	AATAAA	-15	NA	116734179	116728258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157_116733547_116733890
ENSMUSG00000056962.12_11	chr11	-	1620	7	NIC	ENSMUSG00000056962.12	novel	2072	6	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	130.186298135488	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	-8	True	AATAAA	-15	NA	116734177	116728258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116728590_116729815_116729955_116730663_116730753_116731273_116731372_116731894_116732182_116733157_116733547_116733890
ENSMUSG00000056962.12_2	chr11	-	2766	1	FSM	ENSMUSG00002076427.1	ENSMUST00020182605.1	173	1	-232	-2361	-232	2361	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	-8	True	AATAAA	-15	NA	116731024	116728258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116728300_116731000
ENSMUSG00000056962.12_3	chr11	-	1651	7	NIC	ENSMUSG00000056962.12	novel	1196	6	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_3	131.15311238735	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	-8	True	AATAAA	-15	NA	116734165	116728258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116728590_116729815_116729955_116730663_116730758_116731235_116731372_116731894_116732182_116733157_116733547_116733890
ENSMUSG00000056962.12_5	chr11	-	1417	5	ISM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	594	1	-135	0	3prime_fragment	FALSE	canonical	3	250	junction_2	32.8252951243397	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	-8	True	AATAAA	-15	NA	116733681	116728258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157
ENSMUSG00000056962.12_6	chr11	-	1667	6	NIC	ENSMUSG00000056962.12	novel	1668	6	NA	NA	-38	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	113.206713581837	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	-8	True	AATAAA	-15	NA	116734313	116728258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116728590_116729815_116729955_116731273_116731372_116731894_116732182_116733157_116733547_116733890
ENSMUSG00000056999.17_0	chr19	-	3261	25	FSM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	-42	1840	-42	-153	multi-exon	TRUE	canonical	3	707	junction_13	63.1947496940125	1382	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGATGTAGAATATTTTTA	NA	False	NA	-19	True	AATAAA	-14	NA	37340052	37247981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
ENSMUSG00000057000.13_11	chrX	-	3011	20	NIC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	12	-12	combination_of_known_junctions	FALSE	canonical	3	12	junction_14	18.5366299040426	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGGAACATTTGTG	NA	False	NA	NA	False	AATAAA	-13	NA	134985979	134972859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979846_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134982111_134982182_134985845
ENSMUSG00000057000.13_14	chrX	-	2981	20	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	14	-12	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_19	14.4216288782296	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGGAACATTTGTG	NA	False	NA	NA	False	AATAAA	-13	NA	134985977	134972859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134985845
ENSMUSG00000057000.13_16	chrX	-	3080	9	ISM	ENSMUSG00000057000.13	ENSMUST00000080929.13	2978	19	7752	12	7739	-12	intron_retention	FALSE	canonical	3	57	junction_8	6.13264828601804	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGGAACATTTGTG	NA	False	NA	NA	False	AATAAA	-13	NA	134978252	134972859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009
ENSMUSG00000057000.13_21	chrX	-	2974	20	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	14	-12	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_19	16.3524206785987	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGGAACATTTGTG	NA	False	NA	NA	False	AATAAA	-13	NA	134985977	134972859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981866_134985845
ENSMUSG00000057000.13_25	chrX	-	2933	19	FSM	ENSMUSG00000057000.13	ENSMUST00000080929.13	2978	19	33	12	20	-12	multi-exon	FALSE	canonical	3	12	junction_14	17.7173452014588	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGGAACATTTGTG	NA	False	NA	NA	False	AATAAA	-13	NA	134985971	134972859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979846_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134985845
ENSMUSG00000057000.13_5	chrX	-	3050	21	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	19	-11	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_20	18.3888553205467	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAGGAACATTTGTGT	NA	False	NA	NA	False	AATAAA	-14	NA	134985972	134972858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134982111_134982185_134985845
ENSMUSG00000057000.13_6	chrX	-	3051	21	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	14	-12	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_19	15.6232999075099	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGGAACATTTGTG	NA	False	NA	NA	False	AATAAA	-13	NA	134985977	134972859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134982111_134982182_134985845
ENSMUSG00000057036.8_0	chr3	+	508	1	FSM	ENSMUSG00000057036.8	ENSMUST00000077389.8	444	1	-24	-40	-24	40	mono-exon	FALSE	NA	NA	NA	NA	NA	1068	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	24387207	24387715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_24387200_24387700
ENSMUSG00000057054.12_0	chr11	-	1062	7	FSM	ENSMUSG00000057054.12	ENSMUST00000108542.8	1080	7	5	13	5	-5	multi-exon	FALSE	canonical	1	2	junction_5	4.07226390762354	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATAGTCTTGTTTCTGTGC	NA	False	NA	NA	False	ATTAAA	-8	NA	70590976	70579199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689_70586775_70590883
ENSMUSG00000057060.9_1	chr8	+	2802	7	FSM	ENSMUSG00000057060.9	ENSMUST00000108759.3	2309	7	-4	-489	-4	0	multi-exon	FALSE	canonical	0	0	junction_2	2.96741563579414	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAAAAAAAAAGC	NA	False	NA	NA	False	AATAAA	-8	NA	127025292	127122710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_127025601_127047737_127048063_127108853_127109074_127113567_127113694_127115821_127116015_127117782_127117873_127121170
ENSMUSG00000057069.8_0	chr13	+	4245	16	FSM	ENSMUSG00000057069.8	ENSMUST00000071973.8	4239	16	-8	2	1	-2	multi-exon	TRUE	canonical	2	4	junction_15	21.5185707910374	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTGTTTCTTTGTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	12580755	12624415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_12581060_12589700_12589821_12594056_12594141_12595254_12595297_12596549_12596633_12598417_12598492_12605641_12605763_12605865_12605913_12608388_12608401_12610578_12610606_12614749_12614843_12614975_12615223_12616624_12616695_12617199_12617287_12619216_12619351_12621715
ENSMUSG00000057069.8_1	chr13	+	4233	15	NIC	ENSMUSG00000057069.8	novel	4239	16	NA	NA	1	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	25.3382223173624	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTGTTTCTTTGTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	12580755	12624415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_12581060_12589700_12589821_12594056_12594141_12595254_12595297_12596549_12596633_12598417_12598492_12605641_12605763_12605865_12605913_12610578_12610606_12614749_12614843_12614975_12615223_12616624_12616695_12617199_12617287_12619216_12619351_12621715
ENSMUSG00000057093.15_18	chr7	+	4456	5	NNC	ENSMUSG00000057093.15	novel	1947	4	NA	NA	251	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	22.5554871372799	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGTGTCTGAGTGATC	NA	False	NA	3	True	NA	NA	NA	27391588	27405905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_27391665_27391906_27391960_27392906_27393034_27398077_27398177_27401804
ENSMUSG00000057093.15_2	chr7	+	4491	6	FSM	ENSMUSG00000057093.15	ENSMUST00000120004.8	4612	6	117	4	117	-4	multi-exon	FALSE	canonical	2	13	junction_1	18.2362276800878	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGTGTCTGAGTGATC	NA	False	NA	3	True	NA	NA	NA	27388881	27405905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27388912_27390639_27390721_27391906_27391960_27392906_27393034_27398077_27398177_27401804
ENSMUSG00000057093.15_21	chr7	+	4430	4	FSM	ENSMUSG00000057093.15	ENSMUST00000076421.7	1947	4	-70	-2413	-45	-4	multi-exon	FALSE	canonical	3	20	junction_2	19.1369334592098	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGTGTCTGAGTGATC	NA	False	NA	3	True	NA	NA	NA	27391856	27405905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27391960_27392906_27393034_27398077_27398177_27401804
ENSMUSG00000057093.15_22	chr7	+	4506	4	NNC	ENSMUSG00000057093.15	novel	4612	6	NA	NA	227	-10	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	25.703436864876	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCTAAAACTGTGTCTGA	NA	False	NA	-3	True	NA	NA	NA	27392153	27405899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_27392339_27392906_27393034_27398077_27398177_27401804
ENSMUSG00000057093.15_26	chr7	+	3237	1	ISM	ENSMUSG00000057093.15	ENSMUST00000120004.8	4612	6	13904	4	10742	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGTGTCTGAGTGATC	NA	False	NA	3	True	NA	NA	NA	27402668	27405905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27402700_27405900
ENSMUSG00000057093.15_6	chr7	+	6124	5	ISM	ENSMUSG00000057093.15	ENSMUST00000120004.8	4612	6	211	5	211	-5	3prime_fragment	FALSE	canonical	3	19	junction_1	18.3762754659371	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACTGTGTCTGAGTGAT	NA	False	NA	2	True	NA	NA	NA	27388975	27405904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27390721_27391906_27391960_27392906_27393034_27398077_27398177_27401804
ENSMUSG00000057101.9_0	chr7	+	3964	6	FSM	ENSMUSG00000057101.9	ENSMUST00000206184.2	827	6	-1	-3136	-1	2	multi-exon	FALSE	canonical	3	9	junction_3	37.880865882395	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGCAAAAAAAGAAACAGAT	NA	False	NA	NA	False	AATAAA	-11	NA	23781370	23807119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_23781664_23784850_23784932_23785912_23786017_23797245_23797321_23800872_23800994_23803829
ENSMUSG00000057101.9_1	chr7	+	3877	5	FSM	ENSMUSG00000057101.9	ENSMUST00000068975.6	3901	5	5	19	5	2	multi-exon	FALSE	canonical	3	55	junction_2	15.0499169432924	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGCAAAAAAAGAAACAGAT	NA	False	NA	NA	False	AATAAA	-11	NA	23781353	23807119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_23781664_23784850_23784932_23797245_23797321_23800872_23800994_23803829
ENSMUSG00000057101.9_3	chr7	+	3786	4	NIC	ENSMUSG00000057101.9	novel	3901	5	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	41.2660743091573	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAGCAAAAAAAGAAACAG	NA	False	NA	NA	False	AATAAA	-9	NA	23781361	23807117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_23781664_23797245_23797321_23800872_23800994_23803829
ENSMUSG00000057101.9_8	chr7	+	2276	1	ISM	ENSMUSG00000057101.9	ENSMUST00000207002.2	3690	3	23499	0	8157	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAACAGATGTCC	NA	False	NA	NA	False	AATAAA	-15	NA	23804847	23807123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_23804800_23807100
ENSMUSG00000057103.12_0	chr6	-	1001	2	FSM	ENSMUSG00000057103.12	ENSMUST00000239124.2	1008	2	7	0	-4	0	multi-exon	FALSE	canonical	3	9	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTAATGCATGTGATG	9881	False	NA	NA	False	NA	NA	NA	85892652	85887138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85888003_85892515
ENSMUSG00000057110.16_19	chr2	+	5920	34	NNC	ENSMUSG00000057110.16	novel	5970	34	NA	NA	-13	2	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	20.7397623189571	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCATCCGCAGGTTA	NA	False	NA	13	True	AATAAA	-16	NA	35022232	35068825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_35022369_35023969_35024124_35025479_35025701_35027643_35027821_35030498_35030634_35033661_35033808_35034225_35034434_35035068_35035249_35037243_35037424_35038502_35038620_35038882_35039028_35039457_35039607_35041691_35041882_35043168_35043486_35045262_35045472_35047607_35047801_35050259_35050391_35050532_35050674_35050802_35050930_35051940_35052106_35052772_35052933_35055458_35055575_35055659_35055878_35057742_35057901_35059253_35059328_35060470_35060660_35061032_35061259_35061849_35062056_35063028_35063170_35065120_35065385_35065549_35065613_35066139_35066335_35068050_35068123_35068408
ENSMUSG00000057110.16_4	chr2	+	7584	44	FSM	ENSMUSG00000057110.16	ENSMUST00000028237.15	7615	44	21	10	21	1	multi-exon	FALSE	canonical	3	34	junction_10	30.4342289721856	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTGTCATCCGCAGGTT	NA	False	NA	12	True	AATAAA	-15	NA	34999524	35068824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_34999642_35001566_35001815_35003335_35003467_35006683_35006815_35008066_35008209_35009948_35010136_35012671_35012866_35015987_35016108_35017316_35017543_35017939_35018050_35019632_35019828_35023969_35024124_35025479_35025701_35027643_35027821_35030498_35030634_35033661_35033808_35034225_35034434_35035068_35035249_35037243_35037424_35038502_35038620_35038882_35039028_35039457_35039607_35041691_35041882_35043168_35043486_35045262_35045472_35047607_35047801_35050259_35050391_35050532_35050674_35050802_35050930_35051940_35052106_35052772_35052933_35055458_35055575_35055659_35055878_35057742_35057901_35059253_35059328_35060470_35060660_35061032_35061259_35061849_35062056_35063028_35063170_35065120_35065385_35065549_35065613_35066139_35066335_35068050_35068123_35068408
ENSMUSG00000057110.16_45	chr2	+	3927	22	ISM	ENSMUSG00000057110.16	ENSMUST00000113037.10	5970	34	19489	11	6627	0	3prime_fragment	FALSE	canonical	3	73	junction_4	20.5702160136463	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGTCATCCGCAGGT	NA	False	NA	11	True	AATAAA	-14	NA	35041734	35068823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_35041882_35043168_35043486_35045262_35045472_35047607_35047801_35050259_35050391_35050532_35050674_35050802_35050930_35051940_35052106_35052772_35052933_35055458_35055575_35055659_35055878_35057742_35057901_35059253_35059328_35060470_35060660_35061032_35061259_35061849_35062056_35063028_35063170_35065120_35065385_35065549_35065613_35066139_35066335_35068050_35068123_35068408
ENSMUSG00000057110.16_64	chr2	+	3445	19	ISM	ENSMUSG00000057110.16	ENSMUST00000156933.8	7189	43	31	30446	31	-7	5prime_fragment	FALSE	canonical	3	34	junction_10	27.5479380151925	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCACCGCTGAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	34999534	35037676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_34999642_35001566_35001815_35003335_35003467_35006683_35006815_35008066_35008209_35009948_35010136_35012671_35012866_35015987_35016108_35017316_35017543_35017939_35018050_35019632_35019828_35023969_35024124_35025479_35025701_35027643_35027821_35030498_35030634_35033661_35033808_35034225_35034434_35035068_35035249_35037243
ENSMUSG00000057110.16_8	chr2	+	2734	11	FSM	ENSMUSG00000057110.16	ENSMUST00000028235.11	2734	11	23	-23	23	23	multi-exon	FALSE	canonical	3	34	junction_10	5.89576118919347	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAGCATTATTTTATT	NA	False	NA	NA	False	TATAAA	-38	NA	34999526	35020762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_34999642_35001566_35001815_35003335_35003467_35006683_35006815_35008066_35008209_35009948_35010136_35012671_35012866_35015987_35016108_35017316_35017543_35017939_35018050_35019632
ENSMUSG00000057113.14_1	chr11	-	1270	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	131	232	1	-8	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	10291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTAGCACTGTTTCT	NA	False	NA	-41	True	AATAAA	-12	NA	33113075	33102518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUSG00000057113.14_153	chr11	-	1151	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	2	4	1	-4	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	1287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAATAAGGATGTATGTG	NA	False	NA	-26	True	AATAAA	-11	NA	33113075	33104930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUSG00000057130.13_0	chr18	+	777	5	NIC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-23	192	combination_of_known_splicesites	FALSE	canonical	3	288	junction_3	1074.60606154069	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCTGCTGTGCTTACTGC	NA	False	NA	12	True	AATAAA	-20	NA	80250054	80265745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_80250117_80250368_80250559_80253276_80253346_80261918_80262023_80265393
ENSMUSG00000057130.13_1	chr18	+	708	4	FSM	ENSMUSG00000057130.13	ENSMUST00000145963.9	4078	4	45	3325	-23	192	multi-exon	FALSE	canonical	3	2407	junction_2	310.116465577406	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCTGCTGTGCTTACTGC	NA	False	NA	12	True	AATAAA	-20	NA	80250054	80265745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80250117_80250368_80250559_80261918_80262023_80265393
ENSMUSG00000057130.13_14	chr18	+	804	4	FSM	ENSMUSG00000057130.13	ENSMUST00000025464.8	517	4	42	-329	11	193	multi-exon	FALSE	canonical	3	221	junction_1	1036.43309265748	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250119	80265746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80250277_80250368_80250559_80261918_80262023_80265393
ENSMUSG00000057130.13_17	chr18	+	640	3	ISM	ENSMUSG00000057130.13	ENSMUST00000025464.8	517	4	292	-323	261	187	3prime_fragment	FALSE	canonical	3	2407	junction_1	12.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGGGATCTGCTGTGCTT	NA	False	NA	7	True	AATAAA	-15	NA	80250369	80265740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_80250559_80261918_80262023_80265393
ENSMUSG00000057130.13_2	chr18	+	3856	5	NNC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-22	-6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	1173.71610707189	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTACTTCTTGGTCATGA	NA	False	NA	1	True	NA	NA	NA	80250055	80269064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_80250117_80250368_80250559_80261918_80262023_80265393_80266876_80267045
ENSMUSG00000057132.17_13	chr14	+	3899	1	NIC	ENSMUSG00000057132.17	novel	5380	25	NA	NA	-3709	-3753	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGCTTTCTGGTAATTTC	NA	False	NA	NA	False	AATAAA	-15	NA	52379111	52383010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_52379100_52383000
ENSMUSG00000057132.17_14	chr14	+	1797	8	ISM	ENSMUSG00000057132.17	ENSMUST00000180901.8	3212	12	12947	409	6	-378	3prime_fragment	FALSE	canonical	2	7	junction_1	2.97609523657138	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52386980	52398386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_52387089_52387344_52387549_52387814_52387951_52389659_52389776_52393609_52393803_52395826_52395912_52396831_52396963_52397562
ENSMUSG00000057132.17_15	chr14	+	4236	5	ISM	ENSMUSG00000057132.17	ENSMUST00000180500.8	602	6	586	-2499	586	-907	3prime_fragment	FALSE	canonical	2	8	junction_3	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGAAAAAATAAGTCACT	NA	False	NA	NA	False	ATTAAA	-35	NA	52388482	52400096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_52389776_52393609_52393803_52395826_52395912_52396831_52396963_52397562
ENSMUSG00000057132.17_7	chr14	+	2754	9	ISM	ENSMUSG00000057132.17	ENSMUST00000180901.8	3212	12	4426	31	-4361	0	3prime_fragment	FALSE	canonical	0	0	junction_1	4.58087055045217	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAGTAAAGAA	NA	False	NA	NA	False	NA	NA	NA	52378459	52398764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_52378731_52386672_52387089_52387344_52387549_52387814_52387951_52389659_52389776_52393609_52393803_52395826_52395912_52396831_52396963_52397562
ENSMUSG00000057133.15_0	chr2	-	3619	5	ISM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	147627	478	126	-478	3prime_fragment	FALSE	canonical	3	46	junction_2	4.26468052730799	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACCTCCTGTATTTTG	NA	False	NA	NA	False	AATACA	-7	NA	160803315	160789375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896_160802350_160803193
ENSMUSG00000057133.15_1	chr2	-	2291	1	ISM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	159323	431	11822	-431	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCAGCAGGGTCTGCTC	NA	False	NA	NA	False	TATAAA	-43	NA	160791619	160789328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_160789300_160791600
ENSMUSG00000057133.15_10	chr2	-	5021	6	ISM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	145843	478	1617	-478	3prime_fragment	FALSE	canonical	3	46	junction_2	5.17687164221791	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACCTCCTGTATTTTG	NA	False	NA	NA	False	AATACA	-7	NA	160805099	160789375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896_160802350_160803193_160803401_160803782
ENSMUSG00000057133.15_11	chr2	-	6011	9	ISM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	139597	191	-4629	-191	3prime_fragment	FALSE	canonical	3	24	junction_8	11.651180197731	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATTTGCTCTGTAAGGCA	5326	False	NA	NA	False	AATGAA	-14	NA	160811345	160789088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896_160802350_160803193_160803401_160803782_160803935_160807088_160808661_160809707_160809917_160811258
ENSMUSG00000057133.15_12	chr2	-	10010	37	FSM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	-46	551	7	-551	multi-exon	FALSE	canonical	3	24	junction_8	18.6792285774042	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGTACTAATTTTCTTT	NA	False	NA	NA	False	AATATA	-12	NA	160950988	160789448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896_160802350_160803193_160803401_160803782_160803935_160807088_160808661_160809707_160809917_160811258_160811476_160812065_160812127_160819378_160819440_160821288_160821419_160823494_160823599_160824543_160824634_160824977_160825138_160825582_160825783_160826377_160826581_160830176_160830288_160832164_160832345_160834034_160834200_160850274_160850471_160854941_160855153_160856003_160856260_160859095_160859240_160859945_160860123_160861371_160861616_160862886_160863009_160867858_160867994_160868168_160868256_160871097_160871216_160871822_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307_160894826_160901838_160901895_160950908
ENSMUSG00000057133.15_29	chr2	-	1450	10	ISM	ENSMUSG00000057133.15	ENSMUST00000138078.8	3092	17	24	17852	24	0	5prime_fragment	FALSE	canonical	3	41	junction_1	19.8997487421324	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATGACGTGTATTTGAC	NA	False	NA	NA	False	CATAAA	-15	NA	160950971	160867805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_160867994_160868168_160868256_160871097_160871216_160871822_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307_160894826_160901838_160901895_160950908
ENSMUSG00000057133.15_3	chr2	-	4318	7	ISM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	143322	548	-904	-548	3prime_fragment	FALSE	canonical	3	30	junction_6	9.46337971105226	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACTAATTTTCTTTTTA	9051	False	NA	NA	False	AATATA	-15	NA	160807620	160789445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896_160802350_160803193_160803401_160803782_160803935_160807088
ENSMUSG00000057133.15_32	chr2	-	1145	7	ISM	ENSMUSG00000057133.15	ENSMUST00000138078.8	3092	17	-1	21806	-1	-1	5prime_fragment	FALSE	canonical	3	60	junction_4	13.7931142241337	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAAAGGGTCTTCTATA	NA	False	NA	NA	False	AATAAA	-16	NA	160950996	160871759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307_160894826_160901838_160901895_160950908
ENSMUSG00000057133.15_36	chr2	-	10444	37	NIC	ENSMUSG00000057133.15	novel	10515	37	NA	NA	11	-110	combination_of_known_junctions	TRUE	canonical	3	17	junction_34	19.0250606332481	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAACTTGAGCCTCTTCA	NA	False	NA	-133	True	TTTAAA	-9	NA	160950984	160789007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896_160802350_160803193_160803401_160803782_160803935_160807088_160808661_160809707_160809917_160811258_160811476_160812065_160812127_160819378_160819440_160821288_160821419_160823494_160823599_160824543_160824634_160824977_160825138_160825582_160825783_160826377_160826581_160830176_160830288_160832164_160832345_160834034_160834200_160850274_160850471_160854941_160855153_160856003_160856260_160859095_160859240_160859945_160860123_160861371_160861616_160862886_160863009_160867858_160867994_160868168_160868256_160871097_160871216_160871822_160871882_160872666_160872730_160881113_160881264_160883904_160884050_160894307_160894826_160901838_160901895_160950908
ENSMUSG00000057133.15_5	chr2	-	3132	4	ISM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	148972	464	1471	-464	3prime_fragment	FALSE	canonical	3	46	junction_2	4.02768199119819	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGCAAGCCTTACTGCA	NA	False	NA	NA	False	TATAAA	-10	NA	160801970	160789361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896
ENSMUSG00000057134.7_0	chr10	-	3972	1	FSM	ENSMUSG00000057134.7	ENSMUST00000075686.7	4558	1	-42	628	-42	-628	mono-exon	FALSE	NA	NA	NA	NA	NA	425	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCTGAGTGAGACGCTGT	NA	False	NA	-11	True	AATAAA	-12	NA	67384940	67380968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_67381000_67384900
ENSMUSG00000057147.14_1	chr2	-	2674	9	FSM	ENSMUSG00000057147.14	ENSMUST00000102542.10	2734	9	60	0	1	0	multi-exon	FALSE	canonical	3	190	junction_3	18.9670767383907	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTGTGTGAATGTC	NA	False	NA	-6	True	NA	NA	NA	114485385	114346900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_114348774_114350192_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
ENSMUSG00000057147.14_3	chr2	-	1561	1	ISM	ENSMUSG00000057147.14	ENSMUST00000028640.14	2632	8	136973	4	27911	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTGTGTGAATGTC	NA	False	NA	-6	True	NA	NA	NA	114348461	114346900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_114346900_114348500
ENSMUSG00000057156.11_0	chr14	-	2075	1	ISM	ENSMUSG00000057156.11	ENSMUST00000081162.6	5609	2	2863	2817	-431	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGCCACTTCTGTGTT	NA	False	NA	-6	True	AATAAA	-33	NA	55095084	55093009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_55093000_55095100
ENSMUSG00000057156.11_1	chr14	-	2899	2	FSM	ENSMUSG00000057156.11	ENSMUST00000142283.4	4713	2	49	1765	49	-1	multi-exon	FALSE	canonical	3	19	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGCCACTTCTGTGTTT	5577	False	NA	-5	True	AATAAA	-34	NA	55101566	55093008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55095739_55101397
ENSMUSG00000057156.11_2	chr14	-	1832	3	NIC	ENSMUSG00000057156.11	novel	4713	2	NA	NA	67	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	9	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGCCACTTCTGTGTTT	5595	False	NA	-5	True	AATAAA	-34	NA	55101548	55093008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_55093169_55094217_55095739_55101397
ENSMUSG00000057176.5_1	chr7	-	1126	9	FSM	ENSMUSG00000057176.5	ENSMUST00000072155.5	2536	9	431	979	5	-2	multi-exon	FALSE	canonical	3	15	junction_4	3.80788655293195	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCACGAGCACCTTCTG	8717	False	NA	-6	True	AATAAA	-28	NA	127187336	127182533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184434_127184625_127184697_127185446_127185617_127185994_127186061_127186735_127186768_127187048
ENSMUSG00000057176.5_7	chr7	-	2361	6	NIC	ENSMUSG00000057176.5	novel	2536	9	NA	NA	15	-2	intron_retention	FALSE	canonical	3	22	junction_2	1.95959179422654	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCACGAGCACCTTCTG	8727	False	NA	-6	True	AATAAA	-28	NA	127187326	127182533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184697_127185446_127186768_127187048
ENSMUSG00000057177.13_1	chr7	-	2194	11	FSM	ENSMUSG00000057177.13	ENSMUST00000071739.12	2260	11	63	3	63	-3	multi-exon	FALSE	canonical	3	276	junction_10	34.6278789416851	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCCCTGTCTGGCTGCCT	NA	False	NA	-3	True	AATAAA	-18	NA	24937213	24927685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24928356_24928889_24928998_24929275_24929466_24930029_24930126_24930209_24930308_24931059_24931167_24931258_24931390_24932998_24933110_24933252_24933337_24934977_24935166_24936802
ENSMUSG00000057177.13_2	chr7	-	3524	10	ISM	ENSMUSG00000057177.13	ENSMUST00000071739.12	2260	11	372	1	372	-1	intron_retention	FALSE	canonical	3	363	junction_8	12.2090838474908	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTGTCTGGCTGCCTGT	NA	False	NA	-1	True	AATAAA	-20	NA	24936904	24927683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_24928356_24928889_24928998_24929275_24929466_24930029_24930126_24930209_24930308_24931059_24931167_24931258_24931390_24932998_24933110_24933252_24933337_24934977
ENSMUSG00000057177.13_7	chr7	-	1995	11	NNC	ENSMUSG00000057177.13	novel	2260	11	NA	NA	64	-9	intron_retention	FALSE	canonical	3	64	junction_10	96.9278597721006	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCCTTCTCCCTGTCTGG	NA	False	NA	-9	True	AATAAA	-12	NA	24937212	24927691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_24928356_24928889_24928998_24929275_24929466_24930029_24930126_24930209_24930308_24931059_24931167_24931258_24931390_24932998_24933110_24933252_24933337_24934977_24935166_24936994
ENSMUSG00000057181.16_0	chr11	-	4523	10	FSM	ENSMUSG00000057181.16	ENSMUST00000103225.11	4554	10	26	5	7	-5	multi-exon	FALSE	canonical	2	53	junction_6	17.0105268787113	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATTAAAGGCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	80268834	80251323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_80254845_80255661_80255766_80258887_80259025_80259353_80259419_80261156_80261277_80264465_80264524_80264899_80265044_80266332_80266459_80267628_80267710_80268667
ENSMUSG00000057181.16_3	chr11	-	2697	1	ISM	ENSMUSG00000057181.16	ENSMUST00000179332.8	4536	10	14821	6	5201	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATTAAAGGCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	80254020	80251323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_80251300_80254000
ENSMUSG00000057182.16_1	chr2	-	5301	11	ISM	ENSMUSG00000057182.16	ENSMUST00000100069.9	8550	27	72286	7	-110	-7	3prime_fragment	FALSE	canonical	2	6	junction_6	2.66270539113887	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGTTTGGTGAACTC	NA	False	NA	NA	False	AATAAA	-9	NA	65325685	65288613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_65292082_65295058_65295330_65297265_65297371_65298410_65298549_65299355_65299410_65300269_65300543_65302622_65302746_65312494_65312669_65313386_65313542_65314689_65314811_65325266
ENSMUSG00000057193.9_0	chr9	+	3425	22	FSM	ENSMUSG00000057193.9	ENSMUST00000217461.2	3478	22	49	4	-1	-1	multi-exon	FALSE	canonical	3	79	junction_1	41.7821257447013	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTGACCTGGTATGCTT	6629	False	NA	15	True	AATAAA	-15	NA	21232042	21266320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
ENSMUSG00000057193.9_24	chr9	+	3437	22	FSM	ENSMUSG00000057193.9	ENSMUST00000034697.8	3456	22	17	2	17	-2	multi-exon	FALSE	canonical	3	114	junction_21	32.3776608971381	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGACCTGGTATGCT	5753	False	NA	14	True	AATAAA	-14	NA	21249140	21266319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
ENSMUSG00000057193.9_29	chr9	+	4118	22	NIC	ENSMUSG00000057193.9	novel	3456	22	NA	NA	17	-2	intron_retention	FALSE	canonical	3	72	junction_21	38.6895897334347	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGACCTGGTATGCT	5753	False	NA	14	True	AATAAA	-14	NA	21249140	21266319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296
ENSMUSG00000057193.9_30	chr9	+	3607	23	NIC	ENSMUSG00000057193.9	novel	3456	22	NA	NA	19	-2	combination_of_known_junctions	FALSE	canonical	3	36	junction_22	51.5317642553865	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGACCTGGTATGCT	5755	False	NA	14	True	AATAAA	-14	NA	21249142	21266319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296_21264469_21264977
ENSMUSG00000057193.9_4	chr9	+	4097	22	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	7	-2	intron_retention	FALSE	canonical	3	72	junction_21	46.6520385236562	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGACCTGGTATGCT	6637	False	NA	14	True	AATAAA	-14	NA	21232050	21266319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296
ENSMUSG00000057193.9_8	chr9	+	3586	23	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_22	56.9185477184737	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGACCTGGTATGCTTA	6641	False	NA	16	True	AATAAA	-16	NA	21232054	21266321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296_21264469_21264977
ENSMUSG00000057215.7_1	chr7	+	4744	4	Fusion	ENSMUSG00000073894.2_ENSMUSG00000057215.7	novel	1294	6	NA	NA	0	-4403	multi-exon	FALSE	canonical	0	0	junction_1	17.1529071070248	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATTGTGTGTTTGTCCC	NA	False	NA	11	True	AATAAA	-18	NA	106808651	106895200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_+_106812531_106883988_106884145_106884819_106884938_106894609
ENSMUSG00000057215.7_9	chr7	+	983	4	NNC	ENSMUSG00000057215.7	novel	1294	6	NA	NA	-11	-4403	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	8.98146239020499	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATTGTGTGTTTGTCCC	NA	False	NA	11	True	AATAAA	-18	NA	106842217	106895200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_106842336_106883988_106884145_106884819_106884938_106894609
ENSMUSG00000057219.12_0	chr11	+	1427	3	FSM	ENSMUSG00000057219.12	ENSMUST00000136985.8	1009	3	-25	-393	6	393	multi-exon	FALSE	canonical	1	1	junction_2	10	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAAGAGAGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	115366498	115374996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115366854_115366947_115367092_115374068
ENSMUSG00000057219.12_1	chr11	+	2234	3	FSM	ENSMUSG00000057219.12	ENSMUST00000035240.7	2260	3	23	3	-8	-3	multi-exon	FALSE	canonical	3	16	junction_2	2.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTATTTGTGTGCTAGTC	NA	False	NA	NA	False	ATTAAA	-19	NA	115366515	115381290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115366854_115366947_115367092_115379538
ENSMUSG00000057219.12_2	chr11	+	1352	3	FSM	ENSMUSG00000057219.12	ENSMUST00000126533.2	610	3	-69	-673	6	673	multi-exon	FALSE	canonical	3	4	junction_2	8.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAAAATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	115366498	115376785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_115366854_115366947_115367092_115375932
ENSMUSG00000057229.12_0	chr7	+	1442	6	FSM	ENSMUSG00000057229.12	ENSMUST00000077338.12	1465	6	19	4	9	-1	multi-exon	FALSE	canonical	3	84	junction_1	20.2938414303453	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTACCCTGTGGCCTTTCCT	1758	False	NA	35	True	NA	NA	NA	25318857	25324972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_25318886_25320320_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
ENSMUSG00000057229.12_12	chr7	+	2590	3	NIC	ENSMUSG00000057229.12	novel	1465	6	NA	NA	1440	-3	intron_retention	FALSE	canonical	3	96	junction_2	18	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTACCCTGTGGCCTTTC	4668	False	NA	33	True	NA	NA	NA	25321767	25324970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_25323364_25323451_25323615_25324139
ENSMUSG00000057229.12_14	chr7	+	2807	5	NIC	ENSMUSG00000057229.12	novel	1465	6	NA	NA	16	-3	intron_retention	FALSE	canonical	3	84	junction_1	20.9463600656534	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTACCCTGTGGCCTTTC	1765	False	NA	33	True	NA	NA	NA	25318864	25324970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_25318886_25320320_25320518_25321768_25323364_25323451_25323615_25324139
ENSMUSG00000057229.12_3	chr7	+	2158	6	FSM	ENSMUSG00000057229.12	ENSMUST00000085953.5	2387	6	226	3	226	-3	multi-exon	FALSE	canonical	1	1	junction_1	50.2330568450697	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTACCCTGTGGCCTTTC	2044	False	NA	33	True	NA	NA	NA	25319143	25324970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_25319890_25320320_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
ENSMUSG00000057229.12_7	chr7	+	1413	5	ISM	ENSMUSG00000057229.12	ENSMUST00000085953.5	2387	6	1402	3	-1	-3	3prime_fragment	FALSE	canonical	3	96	junction_4	15.0332963783729	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTACCCTGTGGCCTTTC	3220	False	NA	33	True	NA	NA	NA	25320319	25324970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
ENSMUSG00000057230.15_11	chr6	+	5174	18	NIC	ENSMUSG00000057230.15	novel	19341	21	NA	NA	3	673	combination_of_known_splicesites	FALSE	canonical	2	7	junction_16	9.86903865001209	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTGGTCAGTTGTC	NA	False	NA	10	True	AGTAAA	-11	NA	86826501	86975277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86826634_86826813_86827198_86901995_86902115_86912411_86912521_86913923_86914067_86921338_86921461_86923085_86923168_86923842_86923976_86926523_86926628_86927762_86927843_86932085_86932241_86933240_86933555_86936013_86936257_86940974_86941208_86942458_86942617_86944250_86944356_86959523_86959626_86972821
ENSMUSG00000057230.15_2	chr6	+	5269	16	NIC	ENSMUSG00000057230.15	novel	19341	21	NA	NA	-21	666	intron_retention	FALSE	canonical	2	13	junction_12	8.25159917160843	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGGAAAAGAGTTGGTC	NA	False	NA	3	True	AGTAAA	-4	NA	86826477	86975270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86827198_86901995_86902115_86912411_86912521_86913923_86914067_86921338_86921461_86923085_86923168_86923842_86923976_86926523_86926628_86927762_86927843_86932085_86932241_86933240_86933555_86936013_86936257_86940974_86941208_86942458_86942617_86944250_86944356_86972821
ENSMUSG00000057230.15_25	chr6	+	3751	1	ISM	ENSMUSG00000057230.15	ENSMUST00000089519.13	19341	21	149954	2	4461	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGACTTAGTTGTGTGTT	NA	False	NA	3	True	ATTAAA	-13	NA	86976452	86980203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_86976500_86980200
ENSMUSG00000057230.15_4	chr6	+	6466	17	NIC	ENSMUSG00000057230.15	novel	19341	21	NA	NA	-8	2059	combination_of_known_junctions	FALSE	canonical	2	14	junction_16	7.67885692990825	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATAGTTTAATCATTTG	NA	False	NA	NA	False	AATAAA	-15	NA	86826490	86976663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86826634_86826813_86827198_86901995_86902115_86912411_86912521_86913923_86914067_86921338_86921461_86923085_86923168_86923842_86923976_86926523_86926628_86927762_86927843_86932085_86932241_86933240_86933555_86936013_86936257_86940977_86941208_86942458_86942617_86944250_86944356_86972821
ENSMUSG00000057230.15_7	chr6	+	5088	17	NIC	ENSMUSG00000057230.15	novel	19341	21	NA	NA	-8	678	combination_of_known_junctions	FALSE	canonical	2	13	junction_13	8.0156097709407	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGGTCAGTTGTCCTTGC	NA	False	NA	15	True	AGTAAA	-16	NA	86826490	86975282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86826634_86826813_86827198_86901995_86902115_86912411_86912521_86913923_86914067_86921338_86921461_86923085_86923168_86923842_86923976_86926523_86926628_86927762_86927843_86932085_86932241_86933240_86933555_86936013_86936257_86940974_86941208_86942458_86942617_86944250_86944356_86972821
ENSMUSG00000057230.15_8	chr6	+	6578	18	NIC	ENSMUSG00000057230.15	novel	19341	21	NA	NA	-8	2069	combination_of_known_splicesites	FALSE	canonical	2	7	junction_16	9.64347135591679	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCATTTGTGAAGTGTGG	NA	False	NA	NA	False	AATAAA	-25	NA	86826490	86976673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86826634_86826813_86827198_86901995_86902115_86912411_86912521_86913923_86914067_86921338_86921461_86923085_86923168_86923842_86923976_86926523_86926628_86927762_86927843_86932085_86932241_86933240_86933555_86936013_86936257_86940977_86941208_86942458_86942617_86944250_86944356_86959523_86959626_86972821
ENSMUSG00000057234.10_0	chr2	-	1878	6	FSM	ENSMUSG00000057234.10	ENSMUST00000081631.10	1894	6	10	6	0	-3	multi-exon	FALSE	canonical	3	30	junction_4	7.25534285888682	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTTATTTATTTATTTA	NA	False	NA	NA	False	AATAAA	-14	NA	109108625	108922647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109108537
ENSMUSG00000057234.10_1	chr2	-	1898	6	NIC	ENSMUSG00000057234.10	novel	1894	6	NA	NA	5	-3	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	18.3891272223561	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTTATTTATTTATTTA	NA	False	NA	NA	False	AATAAA	-14	NA	109111088	108922647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109110980
ENSMUSG00000057234.10_2	chr2	-	1815	6	NIC	ENSMUSG00000057234.10	novel	1894	6	NA	NA	69	-3	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	18.3891272223561	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTTATTTATTTATTTA	NA	False	NA	NA	False	AATAAA	-14	NA	109110978	108922647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109110953
ENSMUSG00000057236.11_0	chr4	-	1775	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	40	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCCCCATGCTGGTGGGT	2532	False	NA	-30	True	AATAAA	-13	NA	129229123	129203310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_129203670_129203843_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_11	chr4	-	845	5	NIC	ENSMUSG00000057236.11	novel	722	4	NA	NA	31	1	combination_of_known_junctions	FALSE	canonical	3	143	junction_1	413.387454454051	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCATGCTGGTGGGTTT	2523	False	NA	-28	True	AATAAA	-15	NA	129229132	129203308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_5	chr4	-	1949	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	42	2416	42	1	multi-exon	TRUE	canonical	3	482	junction_1	226.647613038099	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCATGCTGGTGGGTTT	2534	False	NA	-28	True	AATAAA	-15	NA	129229121	129203308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_6	chr4	-	1670	12	NIC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	40	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	305.162062349697	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCATGCTGGTGGGTTT	2532	False	NA	-28	True	AATAAA	-15	NA	129229123	129203308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_129203670_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057244.7_0	chr5	-	365	1	FSM	ENSMUSG00000057244.7	ENSMUST00000079261.7	882	1	557	-40	557	40	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAATTACA	4598	False	NA	NA	False	AATAAA	-17	NA	129700378	129700013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_129700000_129700400
ENSMUSG00000057262.3_0	chr15	-	665	1	FSM	ENSMUSG00000057262.3	ENSMUST00000081993.3	612	1	-2	-51	-2	51	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	52341626	52340961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_52341000_52341600
ENSMUSG00000057265.14_1	chr12	+	2192	12	FSM	ENSMUSG00000057265.14	ENSMUST00000081828.13	2187	12	-5	0	-5	0	multi-exon	FALSE	canonical	0	0	junction_6	1.49931113658824	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAGCTGATCATTGTTT	4338	False	NA	NA	False	ATTAAA	-13	NA	84455839	84480554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84456030_84457810_84458040_84460037_84460104_84461347_84461492_84466747_84466829_84470206_84470278_84471909_84472055_84473481_84473976_84475116_84475219_84476778_84476854_84476992_84477108_84480074
ENSMUSG00000057278.9_0	chr6	+	389	4	FSM	ENSMUSG00000057278.9	ENSMUST00000089558.7	1055	4	240	426	2	-5	multi-exon	FALSE	canonical	3	2623	junction_2	545.029866663796	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGTGCGTTTCTGCTGTT	NA	False	NA	24	True	AATAAA	-15	NA	86348525	86355884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86348597_86352658_86352682_86353476_86353602_86355714
ENSMUSG00000057278.9_8	chr6	+	275	2	ISM	ENSMUSG00000057278.9	ENSMUST00000204380.3	746	4	4944	5	4911	-5	3prime_fragment	FALSE	canonical	3	3818	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGTGCGTTTCTGCTGTT	NA	False	NA	24	True	AATAAA	-15	NA	86353496	86355884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_86353602_86355714
ENSMUSG00000057286.7_0	chr11	-	2199	9	FSM	ENSMUSG00000057286.7	ENSMUST00000079545.6	3643	9	42	1402	42	-816	multi-exon	FALSE	canonical	3	12	junction_5	7.34421541078419	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTTTTCCACATTTC	NA	False	NA	0	True	AATAAA	-19	NA	116585652	116567530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_116568508_116569291_116569392_116570732_116570817_116572684_116572789_116575171_116575311_116575922_116576092_116576661_116576837_116581137_116581199_116585262
ENSMUSG00000057286.7_2	chr11	-	2732	8	NNC	ENSMUSG00000057286.7	novel	3643	9	NA	NA	-39	-816	intron_retention	TRUE	canonical	3	10	junction_3	7.67184090405574	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTTTTCCACATTTC	NA	False	NA	0	True	AATAAA	-19	NA	116585474	116567530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_116568508_116569291_116569392_116570732_116570916_116572684_116572789_116575171_116576092_116576661_116576837_116581137_116581199_116585262
ENSMUSG00000057286.7_5	chr11	-	3201	4	NIC	ENSMUSG00000110170.2	novel	1683	3	NA	NA	-3123	778	intron_retention	FALSE	canonical	3	15	junction_3	8.28653526310404	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTTTTCCACATTTC	6255	False	NA	0	True	AATAAA	-19	NA	116575239	116567530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116568508_116569291_116569392_116570732_116572789_116575171
ENSMUSG00000057322.13_1	chr11	+	315	5	FSM	ENSMUSG00000057322.13	ENSMUST00000106602.10	371	5	56	0	-29	0	multi-exon	FALSE	canonical	3	6598	junction_1	5536.08152825625	1114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559405	114563157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_114559436_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUSG00000057322.13_18	chr11	+	334	5	FSM	ENSMUSG00000057322.13	ENSMUST00000082092.5	345	5	4	7	4	-7	multi-exon	FALSE	canonical	3	1304	junction_1	7543.63564122102	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTGTTTTGTGTGTCCT	NA	False	NA	21	True	ATTAAA	-8	NA	114559455	114563150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_114559512_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUSG00000057322.13_20	chr11	+	287	4	FSM	ENSMUSG00000057322.13	ENSMUST00000106599.8	457	4	168	2	151	-2	multi-exon	FALSE	canonical	3	12129	junction_3	3589.14031799012	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTGTCCTCAGTC	NA	False	NA	26	True	ATTAAA	-13	NA	114559602	114563155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUSG00000057322.13_4	chr11	+	309	5	FSM	ENSMUSG00000057322.13	ENSMUST00000077915.10	364	5	54	1	-7	-1	multi-exon	FALSE	canonical	3	5140	junction_1	6068.87239835375	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTGTGTCCTCAGTCT	NA	False	NA	27	True	ATTAAA	-14	NA	114559427	114563156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_114559453_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUSG00000057335.12_12	chr1	-	7005	20	FSM	ENSMUSG00000057335.12	ENSMUST00000195717.6	6967	20	-39	1	-39	0	multi-exon	FALSE	canonical	0	0	junction_16	17.0540935045859	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAATGATCATAGATTTC	NA	False	NA	-10	True	AATAAA	-17	NA	176641672	176561228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_176563548_176564409_176564462_176565093_176565188_176566646_176566736_176567484_176567656_176570066_176570215_176577491_176577727_176582731_176584550_176585962_176586084_176588916_176589067_176596798_176597093_176597278_176597437_176601999_176602477_176607826_176607962_176609816_176609977_176610062_176610122_176616032_176616112_176620101_176620192_176621070_176621216_176641461
ENSMUSG00000057335.12_17	chr1	-	7020	20	NIC	ENSMUSG00000057335.12	novel	6967	20	NA	NA	-25	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	17.126383721924	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCAATGATCATAGATTT	NA	False	NA	-11	True	AATAAA	-16	NA	176641658	176561229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_176563548_176564409_176564462_176565093_176565188_176566646_176566736_176567484_176567656_176570036_176570215_176577491_176577727_176582731_176584550_176585962_176586084_176588916_176589067_176596798_176597093_176597278_176597437_176601999_176602477_176607826_176607962_176609816_176609977_176610062_176610122_176616032_176616112_176620101_176620192_176621070_176621216_176641461
ENSMUSG00000057335.12_28	chr1	-	3366	8	ISM	ENSMUSG00000057335.12	ENSMUST00000057037.13	6930	20	51701	10	-90	0	3prime_fragment	TRUE	canonical	3	24	junction_5	10.2936477340868	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAATGATCATAGATTTC	NA	False	NA	-10	True	AATAAA	-17	NA	176582989	176561228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_176563548_176564409_176564462_176565093_176565188_176566646_176566736_176567484_176567656_176570066_176570215_176577491_176577727_176582731
ENSMUSG00000057335.12_50	chr1	-	2441	3	ISM	ENSMUSG00000057335.12	ENSMUST00000194489.6	3051	7	12914	-438	5507	0	3prime_fragment	FALSE	canonical	3	52	junction_2	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAATGATCATAGATTTC	NA	False	NA	-10	True	AATAAA	-17	NA	176565163	176561228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_176563548_176564409_176564462_176565093
ENSMUSG00000057335.12_6	chr1	-	1454	1	ISM	ENSMUSG00000057335.12	ENSMUST00000057037.13	6930	20	72008	10	7988	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAATGATCATAGATTTC	NA	False	NA	-10	True	AATAAA	-17	NA	176562682	176561228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_176561200_176562700
ENSMUSG00000057337.14_0	chr10	-	2267	1	ISM	ENSMUSG00000057337.14	ENSMUST00000135158.9	6108	4	35462	0	4909	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTCTGTAGTGGTTAT	NA	False	NA	NA	False	AATGAA	-7	NA	60019620	60017353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_60017400_60019600
ENSMUSG00000057337.14_1	chr10	-	5764	3	NIC	ENSMUSG00000057337.14	novel	6108	4	NA	NA	191	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTCTGTAGTGGTTAT	NA	False	NA	NA	False	AATGAA	-7	NA	60054891	60017353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_60022706_60023894_60024141_60054725
ENSMUSG00000057337.14_4	chr10	-	6149	4	FSM	ENSMUSG00000057337.14	ENSMUST00000135158.9	6108	4	-41	0	-41	0	multi-exon	FALSE	canonical	2	3	junction_2	0.942809041582063	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTCTGTAGTGGTTAT	NA	False	NA	NA	False	AATGAA	-7	NA	60055123	60017353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_60022706_60023894_60024141_60029914_60030068_60054725
ENSMUSG00000057342.16_1	chr7	-	2183	5	ISM	ENSMUSG00000057342.16	ENSMUST00000072836.7	2968	6	1670	-17	-94	-1	3prime_fragment	FALSE	canonical	3	106	junction_2	12.747548783982	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCGACATCCCTTTCAGT	7627	False	NA	-7	True	AATAAA	-34	NA	45362961	45359691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683
ENSMUSG00000057342.16_2	chr7	-	3055	6	ISM	ENSMUSG00000057342.16	ENSMUST00000107737.11	3548	7	313	817	213	1	3prime_fragment	FALSE	canonical	3	87	junction_5	18.0554700852678	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTTCACCCCTTCCACC	3475	False	NA	-23	True	AATAAA	-18	NA	45367113	45359707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45366416
ENSMUSG00000057342.16_3	chr7	-	2613	6	FSM	ENSMUSG00000057342.16	ENSMUST00000210060.2	2577	6	-37	1	-37	-1	multi-exon	FALSE	canonical	3	8	junction_5	47.003829631212	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCGACATCCCTTTCAGT	3225	False	NA	-7	True	AATAAA	-34	NA	45367363	45359691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45367124
ENSMUSG00000057342.16_4	chr7	-	2657	7	FSM	ENSMUSG00000057342.16	ENSMUST00000107737.11	3548	7	74	817	-26	1	multi-exon	FALSE	canonical	3	70	junction_6	23.5141801189552	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTTCACCCCTTCCACC	3236	False	NA	-23	True	AATAAA	-18	NA	45367352	45359707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45366416_45366488_45367124
ENSMUSG00000057342.16_9	chr7	-	2959	6	FSM	ENSMUSG00000057342.16	ENSMUST00000072836.7	2968	6	10	-1	10	1	multi-exon	FALSE	canonical	3	46	junction_5	32.4678302324008	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTTCACCCCTTCCACC	5967	False	NA	-23	True	AATAAA	-18	NA	45364621	45359707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45364020
ENSMUSG00000057363.13_0	chr1	-	2013	15	FSM	ENSMUSG00000057363.13	ENSMUST00000126008.8	4620	15	37	2570	-1	-24	multi-exon	FALSE	canonical	3	170	junction_12	17.2527726254451	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATCAGACATGGGTTTTG	NA	False	NA	-26	True	AATAAA	-10	NA	43866923	43788695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43829623_43829805_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
ENSMUSG00000057363.13_3	chr1	-	1845	14	NIC	ENSMUSG00000057363.13	novel	4620	15	NA	NA	1	-21	combination_of_known_junctions	FALSE	canonical	3	14	junction_9	53.1063463596267	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGACATGGGTTTTGAGC	NA	False	NA	-23	True	AATAAA	-13	NA	43866933	43788692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
ENSMUSG00000057363.13_6	chr1	-	2031	15	NIC	ENSMUSG00000057363.13	novel	4620	15	NA	NA	-3	-23	combination_of_known_junctions	FALSE	canonical	3	10	junction_13	52.099394802392	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGACATGGGTTTTGA	NA	False	NA	-25	True	AATAAA	-11	NA	43866925	43788694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43829623_43829805_43836404_43836466_43844512_43844557_43844785_43844850_43846509_43846538_43866774
ENSMUSG00000057367.13_0	chr9	-	3063	7	NIC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	57.8234861933761	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTTTCTGATGTGA	-16	True	NA	-10	True	AATAAA	-12	NA	7837054	7818236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_7818945_7819021_7819064_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
ENSMUSG00000057367.13_12	chr9	-	3000	6	NIC	ENSMUSG00000057367.13	novel	3130	7	NA	NA	-125	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	62.474314722132	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTTTCTGATGTGA	1657	False	NA	-10	True	AATAAA	-12	NA	7835381	7818236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_7818945_7819021_7819064_7820974_7821221_7825615_7825665_7826931_7827011_7833505
ENSMUSG00000057367.13_2	chr9	-	3318	8	FSM	ENSMUSG00000057367.13	ENSMUST00000190341.7	3331	8	4	9	4	0	multi-exon	FALSE	canonical	3	127	junction_2	22.0352222681815	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTTTCTGATGTGA	-16	True	NA	-10	True	AATAAA	-12	NA	7837054	7818236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
ENSMUSG00000057367.13_3	chr9	-	3255	7	FSM	ENSMUSG00000057367.13	ENSMUST00000074246.7	3130	7	-125	0	-125	0	multi-exon	FALSE	canonical	3	127	junction_2	23.4781222039204	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTTTCTGATGTGA	1657	False	NA	-10	True	AATAAA	-12	NA	7835381	7818236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505
ENSMUSG00000057367.13_34	chr9	-	3526	8	NIC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	91	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	57.0273833257286	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTTTCTGATGTGA	0	True	NA	-10	True	AATAAA	-12	NA	7836967	7818236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836695
ENSMUSG00000057375.14_0	chr4	+	1303	10	FSM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	17	1	-4	-1	multi-exon	FALSE	canonical	3	322	junction_9	32.5261528202145	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTCCTTCAGCTC	NA	False	NA	27	True	AGTAAA	-17	NA	107171576	107217018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
ENSMUSG00000057375.14_9	chr4	+	1180	9	NIC	ENSMUSG00000057375.14	novel	1321	10	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_8	129.727599222371	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTCCTTCAGCTC	NA	False	NA	27	True	AGTAAA	-17	NA	107171574	107217018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107216803
ENSMUSG00000057388.10_0	chr17	-	964	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	246	9	4	-9	multi-exon	FALSE	canonical	3	996	junction_2	30.9120616516523	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAACTGTGAACCCTTAC	NA	False	NA	-18	True	ATTAAA	-9	NA	13134986	13130244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
ENSMUSG00000057388.10_3	chr17	-	2610	3	NIC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	1	-2	intron_retention	FALSE	canonical	3	1056	junction_2	5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAACCCTTACTGTGTTG	NA	False	NA	-11	True	ATTAAA	-16	NA	13134989	13130237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_13130637_13132656_13134712_13134833
ENSMUSG00000057396.8_0	chr13	+	4085	4	FSM	ENSMUSG00000057396.8	ENSMUST00000052716.8	3482	4	8	-611	8	611	multi-exon	FALSE	canonical	1	3	junction_2	3.29983164553722	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGAGTTGTCCTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	67276299	67290462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_67276379_67284781_67284909_67285373_67285470_67286679
ENSMUSG00000057396.8_2	chr13	+	2179	1	Genic_Genomic	ENSMUSG00000057396.8	novel	NA	NA	NA	NA	11992	611	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGAGTTGTCCTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	67288283	67290462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_67288300_67290500
ENSMUSG00000057406.17_0	chr5	+	4691	23	FSM	ENSMUSG00000057406.17	ENSMUST00000075812.11	7142	23	-28	2479	-28	-8	multi-exon	FALSE	canonical	3	189	junction_2	30.2485912519455	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTAACTGGCATGTGAA	NA	False	NA	34	True	ATTAAA	-11	NA	33978040	34052831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_33978222_33979002_33979073_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024917_34025003_34026097_34026223_34036401_34036534_34037395_34037520_34038330_34038532_34039331_34039512_34039870_34040028_34040142_34040349_34042330_34042435_34042725_34042996_34044595_34044713_34048849_34048992_34049283_34049391_34050748_34050954_34052249
ENSMUSG00000057406.17_11	chr5	+	3270	11	NIC	ENSMUSG00000057406.17	novel	7142	23	NA	NA	-23	15	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	74.4366173331379	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACCAAAAGTATACATTTT	NA	False	NA	NA	False	AATAAA	-29	NA	33978045	34029861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_33978222_33979002_33979073_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024917_34025003_34026097_34026223_34028750
ENSMUSG00000057406.17_2	chr5	+	4615	22	NIC	ENSMUSG00000057406.17	novel	7153	22	NA	NA	-22	-5	combination_of_known_junctions	FALSE	canonical	3	39	junction_7	69.2052388144502	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAACTGGCATGTGAAATG	NA	False	NA	37	True	ATTAAA	-14	NA	33978046	34052834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_33978222_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024920_34025003_34026097_34026223_34036401_34036534_34037395_34037520_34038330_34038532_34039331_34039512_34039870_34040028_34040142_34040349_34042330_34042435_34042725_34042996_34044595_34044713_34048849_34048992_34049283_34049391_34050748_34050954_34052249
ENSMUSG00000057406.17_4	chr5	+	4621	22	NIC	ENSMUSG00000057406.17	novel	7142	23	NA	NA	-23	-3	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	51.8276841421399	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGGCATGTGAAATGCT	NA	False	NA	39	True	ATTAAA	-16	NA	33978045	34052836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_33978222_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024917_34025003_34026097_34026223_34036401_34036534_34037395_34037520_34038330_34038532_34039331_34039512_34039870_34040028_34040142_34040349_34042330_34042435_34042725_34042996_34044595_34044713_34048849_34048992_34049283_34049391_34050748_34050954_34052249
ENSMUSG00000057406.17_8	chr5	+	4713	23	NIC	ENSMUSG00000057406.17	novel	7142	23	NA	NA	-48	-3	combination_of_known_junctions	TRUE	canonical	3	39	junction_8	54.8431459815812	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGGCATGTGAAATGCT	NA	False	NA	39	True	ATTAAA	-16	NA	33978020	34052836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_33978222_33979002_33979073_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024920_34025003_34026097_34026223_34036401_34036534_34037395_34037520_34038330_34038532_34039331_34039512_34039870_34040028_34040142_34040349_34042330_34042435_34042725_34042996_34044595_34044713_34048849_34048992_34049283_34049391_34050748_34050954_34052249
ENSMUSG00000057406.17_85	chr5	+	2204	1	ISM	ENSMUSG00000057406.17	ENSMUST00000075812.11	7142	23	75036	2	3856	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTTCTTACACTTATTT	NA	False	NA	10	True	ATTAAA	-13	NA	34053104	34055308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_34053100_34055300
ENSMUSG00000057409.8_1	chr17	+	2387	5	FSM	ENSMUSG00000057409.8	ENSMUST00000233158.2	3065	5	-2	680	-2	29	multi-exon	FALSE	canonical	3	42	junction_4	50.8527285403645	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATTCTGTAATTATAACT	1473	False	NA	NA	False	AATAAA	-16	NA	21709257	21730055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21728248
ENSMUSG00000057409.8_11	chr17	+	2285	4	NIC	ENSMUSG00000057409.8	novel	3065	5	NA	NA	3	24	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	67.6609192961491	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAAATTCTGTAATTA	1478	False	NA	NA	False	AATAAA	-11	NA	21709262	21730050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_21709528_21711487_21711579_21725242_21725370_21728248
ENSMUSG00000057409.8_2	chr17	+	758	5	NNC	ENSMUSG00000057409.8	novel	3065	5	NA	NA	0	-2245	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	24.0572234474388	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAATAAAA	1475	False	NA	NA	False	NA	NA	NA	21709259	21727781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21727601
ENSMUSG00000057409.8_6	chr17	+	3017	4	ISM	ENSMUSG00000057409.8	ENSMUST00000233158.2	3065	5	1	2926	1	-2217	5prime_fragment	FALSE	canonical	3	156	junction_2	2.49443825784929	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAATGGGTTGTCTGAAC	1476	False	NA	NA	False	AATAAA	-10	NA	21709260	21727809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242
ENSMUSG00000057409.8_7	chr17	+	2205	6	Fusion	ENSMUSG00000117037.2_ENSMUSG00000057409.8	novel	3065	5	NA	NA	3	827	multi-exon	FALSE	canonical	3	7	junction_3	73.6787622045865	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGCTCCTTGGTGGCCA	1478	False	NA	NA	False	AATAAA	-13	NA	21709262	21752084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_+_21709528_21711487_21711579_21720472_21720565_21742853_21742938_21748201_21748329_21750538
ENSMUSG00000057411.10_0	chr17	-	1844	1	NIC	ENSMUSG00000057411.10	novel	1886	3	NA	NA	22	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGACTTTTGTTTGTT	8414	False	NA	-9	True	AATAAA	-15	NA	26011325	26009481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26009500_26011300
ENSMUSG00000057411.10_1	chr17	-	887	5	FSM	ENSMUSG00000057411.10	ENSMUST00000072735.9	1321	5	427	7	2	-2	multi-exon	FALSE	canonical	3	112	junction_4	48.7185796180472	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGACTTTTGTTTGTT	8394	False	NA	-9	True	AATAAA	-15	NA	26011345	26009481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011026
ENSMUSG00000057411.10_2	chr17	-	625	5	NNC	ENSMUSG00000057411.10	novel	1321	5	NA	NA	14	-2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	90.9763018593304	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGACTTTTGTTTGTT	9991	False	NA	-9	True	AATAAA	-15	NA	26011758	26009481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011701
ENSMUSG00000057411.10_5	chr17	-	1285	4	FSM	ENSMUSG00000057411.10	ENSMUST00000235327.2	1267	4	-20	2	2	-2	multi-exon	FALSE	canonical	3	179	junction_3	24.4449494897321	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGACTTTTGTTTGTT	8372	False	NA	-9	True	AATAAA	-15	NA	26011367	26009481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545
ENSMUSG00000057411.10_6	chr17	-	632	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236683.2	627	5	-7	2	1	-2	multi-exon	FALSE	canonical	3	28	junction_4	82.996987897152	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGACTTTTGTTTGTT	8371	False	NA	-9	True	AATAAA	-15	NA	26011368	26009481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011304
ENSMUSG00000057421.13_4	chrX	-	2528	13	FSM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	11	-9	11	9	multi-exon	FALSE	canonical	3	815	junction_5	66.9966831683148	1325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTTTGTGAGATGAGG	NA	False	NA	-27	True	AATAAA	-13	NA	95000508	94978931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
ENSMUSG00000057440.9_1	chr18	-	4825	17	NIC	ENSMUSG00000057440.9	novel	4981	17	NA	NA	0	-155	combination_of_known_junctions	FALSE	canonical	3	86	junction_16	10.4634781502137	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATATATCTGCTTGAA	-22	True	NA	NA	False	AATAAA	-9	NA	7626866	7348118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_7351145_7353153_7353298_7355017_7355127_7356141_7356236_7379988_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626728
ENSMUSG00000057440.9_2	chr18	-	2013	1	ISM	ENSMUSG00000057440.9	ENSMUST00000115869.4	4981	17	276735	160	4535	-155	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATATATCTGCTTGAA	NA	False	NA	NA	False	AATAAA	-9	NA	7350131	7348118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_7348100_7350100
ENSMUSG00000057440.9_3	chr18	-	4818	17	FSM	ENSMUSG00000057440.9	ENSMUST00000115869.4	4981	17	3	160	-2	-155	multi-exon	FALSE	canonical	3	19	junction_16	22.8061635035356	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATATATCTGCTTGAA	-19	True	NA	NA	False	AATAAA	-9	NA	7626863	7348118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_7351145_7353153_7353298_7355017_7355127_7356141_7356236_7379988_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626732
ENSMUSG00000057469.9_0	chr12	+	2485	8	FSM	ENSMUSG00000057469.9	ENSMUST00000221541.2	2362	8	-135	12	1	-12	multi-exon	FALSE	canonical	2	121	junction_1	60.8859757318245	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAAAAATAGTGCTGCG	7397	False	NA	-8	True	ATTAAA	-3	NA	16860964	16876741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_16861317_16863847_16863914_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16874570_16874719_16875365
ENSMUSG00000057469.9_1	chr12	+	2423	7	FSM	ENSMUSG00000057469.9	ENSMUST00000020908.9	2418	7	-14	9	0	-9	multi-exon	FALSE	canonical	2	127	junction_1	56.1505911713215	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATAGTGCTGCGTGC	7396	False	NA	-5	True	ATTAAA	-6	NA	16860963	16876744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_16861317_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16874570_16874719_16875365
ENSMUSG00000057469.9_34	chr12	+	1318	1	NIC	ENSMUSG00000057469.9	novel	2694	10	NA	NA	1275	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATAGTGCTGCGTGC	NA	False	NA	-5	True	ATTAAA	-6	NA	16875426	16876744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_16875400_16876700
ENSMUSG00000057469.9_7	chr12	+	2279	6	NIC	ENSMUSG00000057469.9	novel	2418	7	NA	NA	-7	-12	combination_of_known_splicesites	FALSE	canonical	2	10	junction_5	95.7747357083276	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAAAAATAGTGCTGCG	7389	False	NA	-8	True	ATTAAA	-3	NA	16860956	16876741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_16861317_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16875365
ENSMUSG00000057497.9_0	chr6	+	1602	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	40	1	-28	-1	multi-exon	FALSE	canonical	3	1740	junction_2	62	1442	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTTCTTATGGGTAGT	8657	False	NA	31	True	AATAAA	-15	NA	86342667	86347039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86342802_86343591_86343733_86345712
ENSMUSG00000057506.6_1	chr19	-	857	5	FSM	ENSMUSG00000057506.6	ENSMUST00000079033.6	885	5	21	7	5	-7	multi-exon	FALSE	canonical	3	1199	junction_4	51.0165414351071	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGGAAAACAAAACAAA	984	False	NA	NA	False	NA	NA	NA	44134864	44127704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44128153_44130562_44130668_44131459_44131580_44134379_44134497_44134797
ENSMUSG00000057506.6_2	chr19	-	1649	4	NIC	ENSMUSG00000057506.6	novel	885	5	NA	NA	5	-7	intron_retention	FALSE	canonical	3	1199	junction_3	40.0860186210715	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGGAAAACAAAACAAA	984	False	NA	NA	False	NA	NA	NA	44134864	44127704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_44128153_44130562_44131580_44134379_44134497_44134797
ENSMUSG00000057522.16_0	chr11	+	2478	11	FSM	ENSMUSG00000057522.16	ENSMUST00000107724.9	2881	11	10	393	-5	-393	multi-exon	FALSE	canonical	3	59	junction_1	65.0422170593838	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGTGGTATCTCTGGTC	NA	False	NA	4	True	TATAAA	-16	NA	95304915	95383839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95304958_95305157_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUSG00000057522.16_2	chr11	+	2641	10	FSM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	29	393	29	-393	multi-exon	FALSE	canonical	3	227	junction_3	21.694853460364	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGTGGTATCTCTGGTC	NA	False	NA	4	True	TATAAA	-16	NA	95304952	95383839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUSG00000057522.16_3	chr11	+	2466	11	NIC	ENSMUSG00000057522.16	novel	2881	11	NA	NA	14	-393	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	75.6534202795881	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGTGGTATCTCTGGTC	NA	False	NA	4	True	TATAAA	-16	NA	95304937	95383839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_95304968_95305157_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUSG00000057530.15_0	chr4	+	4699	19	NIC	ENSMUSG00000057530.15	novel	4816	20	NA	NA	27	-4	combination_of_known_junctions	TRUE	canonical	3	26	junction_1	12.6238310789994	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGCAGTGTGTCTGTGTG	NA	False	NA	12	True	AATAAA	-12	NA	137589574	137692536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137589693_137641078_137641166_137648331_137648474_137653529_137653743_137662571_137662694_137663968_137664116_137664649_137664716_137665934_137666127_137672327_137672471_137673565_137673681_137675854_137675966_137676757_137676857_137677466_137677545_137678808_137678913_137683768_137683880_137684445_137684514_137685309_137685501_137688953_137689050_137690040
ENSMUSG00000057530.15_12	chr4	+	2021	1	ISM	ENSMUSG00000057530.15	ENSMUST00000102518.10	4816	20	100967	5	49522	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGAGCAGTGTGTCTGTGT	3105	False	NA	11	True	AATAAA	-11	NA	137690514	137692535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137690500_137692500
ENSMUSG00000057530.15_4	chr4	+	4687	19	NIC	ENSMUSG00000057530.15	novel	728	5	NA	NA	50	-7	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	12.6238310789994	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAGAGCAGTGTGTCTGT	506	False	NA	9	True	AATAAA	-9	NA	137640831	137692533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137640941_137641078_137641166_137648331_137648474_137653529_137653743_137662571_137662694_137663968_137664116_137664649_137664716_137665934_137666127_137672327_137672471_137673565_137673681_137675854_137675966_137676757_137676857_137677466_137677545_137678808_137678913_137683768_137683880_137684445_137684514_137685309_137685501_137688953_137689050_137690040
ENSMUSG00000057530.15_6	chr4	+	4437	17	ISM	ENSMUSG00000057530.15	ENSMUST00000102518.10	4816	20	58841	4	7396	-4	3prime_fragment	FALSE	canonical	3	40	junction_1	10.0185375055444	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGCAGTGTGTCTGTGTG	8063	False	NA	12	True	AATAAA	-12	NA	137648388	137692536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137648474_137653529_137653743_137662571_137662694_137663968_137664116_137664649_137664716_137665934_137666127_137672327_137672471_137673565_137673681_137675854_137675966_137676757_137676857_137677466_137677545_137678808_137678913_137683768_137683880_137684445_137684514_137685309_137685501_137688953_137689050_137690040
ENSMUSG00000057530.15_8	chr4	+	3770	12	ISM	ENSMUSG00000057530.15	ENSMUST00000102518.10	4816	20	76420	5	24975	-5	3prime_fragment	FALSE	canonical	3	51	junction_9	8.93410218310614	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGAGCAGTGTGTCTGTGT	1220	False	NA	11	True	AATAAA	-11	NA	137665967	137692535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_137666127_137672327_137672471_137673565_137673681_137675854_137675966_137676757_137676857_137677466_137677545_137678808_137678913_137683768_137683880_137684445_137684514_137685309_137685501_137688953_137689050_137690040
ENSMUSG00000057531.15_0	chr13	-	1311	10	FSM	ENSMUSG00000057531.15	ENSMUST00000072329.15	1362	10	45	6	-6	0	multi-exon	FALSE	canonical	3	444	junction_2	46.8187996428785	376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAACACTGTGCAGCTGG	NA	False	NA	NA	False	AATAAA	-9	NA	45155578	45075560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_45075931_45076624_45076769_45084471_45084628_45106647_45106671_45123521_45123655_45136216_45136350_45139510_45139572_45145494_45145546_45147160_45147215_45155392
ENSMUSG00000057534.14_0	chr11	-	833	2	FSM	ENSMUSG00000057534.14	ENSMUST00000061938.14	819	2	-19	5	-5	-5	multi-exon	FALSE	canonical	3	61	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATACTGCTCTCGCGTC	6800	False	NA	-5	True	AATAAA	-21	NA	88857762	88855488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_88856100_88857540
ENSMUSG00000057541.15_0	chr5	-	3365	16	FSM	ENSMUSG00000057541.15	ENSMUST00000119946.8	3407	16	34	8	34	0	multi-exon	TRUE	canonical	3	301	junction_13	29.1369181623589	628	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACTGAGTGCATGTAAAA	NA	False	NA	-16	True	AATAAA	-16	NA	23988675	23945653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_23946975_23947341_23947434_23948414_23948545_23951423_23951526_23952791_23952919_23953680_23953842_23954802_23954865_23957259_23957386_23959455_23959585_23965219_23965298_23967360_23967473_23973765_23973911_23980666_23980769_23980881_23980967_23983070_23983498_23988509
ENSMUSG00000057551.11_12	chr9	+	4030	9	NNC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-10	-7	at_least_one_novel_splicesite	TRUE	canonical	3	26	junction_7	65.1161222355877	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTACAATGGGACTGAT	NA	False	NA	7	True	AATAAA	-10	NA	19533387	19561020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_19533582_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556507_19556604_19557997
ENSMUSG00000057551.11_2	chr9	+	4012	9	FSM	ENSMUSG00000057551.11	ENSMUST00000208694.2	3988	9	-26	2	0	-2	multi-exon	FALSE	canonical	3	126	junction_2	38.1313519298752	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATGGGACTGATATTTG	NA	False	NA	12	True	AATAAA	-15	NA	19533397	19561025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_19533582_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
ENSMUSG00000057551.11_5	chr9	+	3961	8	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-9	-7	combination_of_known_junctions	FALSE	canonical	3	124	junction_2	34.0665614972351	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTACAATGGGACTGAT	NA	False	NA	7	True	AATAAA	-10	NA	19533388	19561020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_19533582_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
ENSMUSG00000057551.11_58	chr9	+	2344	1	ISM	ENSMUSG00000057551.11	ENSMUST00000208694.2	3988	9	25259	1	6163	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATGGGACTGATATTTGT	NA	False	NA	13	True	AATAAA	-16	NA	19558682	19561026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_19558700_19561000
ENSMUSG00000057551.11_9	chr9	+	4028	9	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-9	-7	combination_of_known_splicesites	FALSE	canonical	3	22	junction_2	77.4721724233934	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTACAATGGGACTGAT	NA	False	NA	7	True	AATAAA	-10	NA	19533388	19561020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_19533582_19535527_19535595_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
ENSMUSG00000057554.14_0	chr13	-	2529	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099821.10	2792	10	262	1	17	0	multi-exon	FALSE	canonical	0	0	junction_5	18.5718491337539	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGAATACTCTCTGGAAT	NA	False	NA	-14	True	ATTAAA	-17	NA	12476357	12454298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
ENSMUSG00000057554.14_1	chr13	-	2551	10	FSM	ENSMUSG00000057554.14	ENSMUST00000144283.2	1148	10	29	-1432	27	2	multi-exon	FALSE	canonical	3	23	junction_5	11.9948548640605	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCTCTGGAATAGTTT	NA	False	NA	-9	True	ATTAAA	-22	NA	12476347	12454293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468138_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
ENSMUSG00000057554.14_10	chr13	-	2118	8	ISM	ENSMUSG00000057554.14	ENSMUST00000099820.10	2736	10	5087	196	107	-196	3prime_fragment	FALSE	canonical	0	0	junction_5	20.5485984426964	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTATTTTCATTTCTATT	4224	False	NA	NA	False	AATAAA	-17	NA	12471297	12454500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224
ENSMUSG00000057554.14_3	chr13	-	2514	9	NIC	ENSMUSG00000057554.14	novel	2792	10	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	25.3118055460293	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATACTCTCTGGAATA	NA	False	NA	-13	True	ATTAAA	-18	NA	12476368	12454297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_12455876_12462027_12462194_12463299_12463389_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
ENSMUSG00000057554.14_4	chr13	-	2692	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099820.10	2736	10	51	-7	41	0	multi-exon	FALSE	canonical	0	0	junction_5	22.4152725712726	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATACTCTCTGGAATA	NA	False	NA	-13	True	ATTAAA	-18	NA	12476333	12454297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476121
ENSMUSG00000057561.11_0	chr18	+	2823	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	29	13	8	-13	multi-exon	FALSE	canonical	3	1498	junction_1	106	2316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTTAGAGAAATATCTAAAT	NA	False	NA	7	True	ATTAAA	-4	NA	46730799	46743265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_46730868_46731707_46731768_46740570
ENSMUSG00000057561.11_22	chr18	+	2181	1	ISM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	10318	9	10008	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAATATCTAAATGTTT	80	False	NA	11	True	ATTAAA	-8	NA	46741088	46743269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_46741100_46743300
ENSMUSG00000057561.11_5	chr18	+	1805	2	FSM	ENSMUSG00000057561.11	ENSMUST00000235973.2	2651	2	916	-70	627	-1	multi-exon	FALSE	canonical	3	1710	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCATGAGAGGCTTTTTT	NA	False	NA	26	True	AATAAA	-20	NA	46731707	46742315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_46731768_46740570
ENSMUSG00000057572.16_0	chr4	+	679	7	FSM	ENSMUSG00000057572.16	ENSMUST00000141235.8	3833	7	312	2842	-5	-4	multi-exon	FALSE	canonical	3	561	junction_4	57.3866031598162	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCAGTGTGTAGCAGTG	NA	False	NA	13	True	TTTAAA	-20	NA	129229799	129240822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
ENSMUSG00000057572.16_3	chr4	+	5242	6	NIC	ENSMUSG00000057572.16	novel	3833	7	NA	NA	14	-10	intron_retention	FALSE	canonical	3	561	junction_3	62.6597159265824	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGGAAAACCAGTGTGTA	NA	False	NA	7	True	TTTAAA	-14	NA	129229818	129240816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
ENSMUSG00000057572.16_5	chr4	+	683	6	FSM	ENSMUSG00000057572.16	ENSMUST00000106047.4	618	6	-75	10	-40	-10	multi-exon	FALSE	canonical	3	22	junction_1	246.415421595321	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGGAAAACCAGTGTGTA	NA	False	NA	7	True	TTTAAA	-14	NA	129229764	129240816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_129229933_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
ENSMUSG00000057580.5_0	chr17	+	158	1	FSM	ENSMUSG00000057580.5	ENSMUST00000170379.2	372	1	150	64	144	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATAAAAAAAATTATCACA	4182	False	NA	NA	False	AATAAA	-7	NA	26120979	26121137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_26121000_26121100
ENSMUSG00000057594.13_0	chr11	-	1324	5	FSM	ENSMUSG00000057594.13	ENSMUST00000076921.7	911	5	138	-551	3	-21	multi-exon	FALSE	canonical	0	0	junction_4	70.9048658414922	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTTAAAAAAAAAAAAAAG	NA	False	NA	NA	False	CATAAA	-5	NA	120358288	120355712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007_120358067_120358188
ENSMUSG00000057594.13_11	chr11	-	1422	4	FSM	ENSMUSG00000057594.13	ENSMUST00000125806.8	607	4	-100	-715	-1	-17	multi-exon	FALSE	canonical	3	126	junction_1	22.69116323349	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	CATAAA	-9	NA	120358260	120355708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007
ENSMUSG00000057594.13_3	chr11	-	2385	3	FSM	ENSMUSG00000057594.13	ENSMUST00000128824.8	938	3	-9	-1438	3	536	multi-exon	FALSE	canonical	3	126	junction_1	26.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACAGGGGTATATGAGG	NA	False	NA	-4	True	AATAAA	-13	NA	120358256	120355155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120356648_120356809_120356926_120357479
ENSMUSG00000057594.13_5	chr11	-	1491	4	FSM	ENSMUSG00000057594.13	ENSMUST00000150688.2	429	4	-30	-1032	2	-17	multi-exon	FALSE	canonical	0	0	junction_3	81.6999932000541	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	CATAAA	-9	NA	120358289	120355708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120356926_120357479_120357594_120358007_120358067_120358188
ENSMUSG00000057594.13_9	chr11	-	1554	3	FSM	ENSMUSG00000057594.13	ENSMUST00000154136.8	760	3	77	-871	-8	-17	multi-exon	FALSE	canonical	3	167	junction_2	6	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	CATAAA	-9	NA	120358230	120355708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120356926_120357479_120357594_120358007
ENSMUSG00000057614.7_0	chr5	-	3216	8	FSM	ENSMUSG00000057614.7	ENSMUST00000074694.7	3135	8	-82	1	-82	-1	multi-exon	FALSE	canonical	3	135	junction_3	12.7711409363583	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACCTATTGACTGAATT	NA	False	NA	-8	True	AATAAA	-20	NA	18565435	18470133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_18472208_18476823_18476978_18478443_18478574_18494521_18494651_18496460_18496619_18513550_18513693_18513780_18513824_18565049
ENSMUSG00000057615.6_0	chrX	+	1372	1	FSM	ENSMUSG00000057615.6	ENSMUST00000075983.6	1459	1	75	12	75	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTAGCAGCAAACTGTT	NA	False	NA	1	True	AATAAA	-14	NA	60753177	60754549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_60753200_60754500
ENSMUSG00000057637.14_13	chr4	-	4259	2	NNC	ENSMUSG00000057637.14	novel	7304	10	NA	NA	60265	-20086	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	0	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTTGTGAAAGGACTG	NA	False	NA	-11	True	AATAAA	-9	NA	142861040	142854046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_142855545_142858279
ENSMUSG00000057637.14_14	chr4	-	4756	3	ISM	ENSMUSG00000057637.14	ENSMUST00000105778.8	7304	10	50558	24156	32588	-24156	internal_fragment	FALSE	canonical	3	47	junction_2	3.5	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGTGGTACCATTTCTT	NA	False	NA	-2	True	AATAAA	-26	NA	142888717	142858116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_142862670_142868693_142868805_142888625
ENSMUSG00000057637.14_17	chr4	-	5671	4	NNC	ENSMUSG00000057637.14	novel	574	5	NA	NA	32608	-20486	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	4.18993502999218	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGTTTTGGGTGCTTCA	NA	False	NA	-3	True	AATAAA	-17	NA	142888697	142854446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_142855545_142858279_142862670_142868693_142868805_142888625
ENSMUSG00000057637.14_18	chr4	-	6668	9	NNC	ENSMUSG00000057637.14	novel	617	6	NA	NA	-1	-20086	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_6	9.44722181384559	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTTGTGAAAGGACTG	NA	False	NA	-11	True	AATAAA	-9	NA	142939280	142854046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_142855545_142858279_142862670_142868693_142868805_142888625_142888753_142896605_142896759_142905857_142905962_142907446_142907562_142921230_142921305_142939184
ENSMUSG00000057637.14_19	chr4	-	5333	8	ISM	ENSMUSG00000057637.14	ENSMUST00000105778.8	7304	10	-5	24156	-1	-24156	5prime_fragment	FALSE	canonical	3	22	junction_5	9.80420567815628	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGTGGTACCATTTCTT	NA	False	NA	-2	True	AATAAA	-26	NA	142939280	142858116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_142862670_142868693_142868805_142888625_142888753_142896605_142896759_142905857_142905962_142907446_142907562_142921230_142921305_142939184
ENSMUSG00000057637.14_20	chr4	-	6725	10	NNC	ENSMUSG00000057637.14	novel	617	6	NA	NA	-2	-20087	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_4	11.2447518622887	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACACTTGTGAAAGGACT	NA	False	NA	-12	True	AATAAA	-8	NA	142939281	142854047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_142855545_142858279_142862670_142868693_142868805_142871959_142872017_142888625_142888753_142896605_142896759_142905857_142905962_142907446_142907562_142921230_142921305_142939184
ENSMUSG00000057637.14_5	chr4	-	5081	5	ISM	ENSMUSG00000057637.14	ENSMUST00000105778.8	7304	10	50554	1655	32584	-1655	3prime_fragment	FALSE	canonical	3	14	junction_1	17.2699160391705	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTTCGTGCTTCTTGAG	NA	False	NA	-5	True	TTTAAA	-14	NA	142888721	142835615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_142835956_142838203_142838348_142858279_142862670_142868693_142868805_142888625
ENSMUSG00000057637.14_6	chr4	-	2532	3	ISM	ENSMUSG00000057637.14	ENSMUST00000105778.8	7304	10	79519	1084	61549	-1084	3prime_fragment	FALSE	canonical	3	14	junction_1	2.5	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTCAAACAAACAAAAACCA	NA	False	NA	NA	False	AATAAA	-27	NA	142859756	142835044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_142835956_142838203_142838348_142858279
ENSMUSG00000057649.7_0	chr13	+	2330	16	FSM	ENSMUSG00000057649.7	ENSMUST00000222399.2	2430	16	23	77	-4	0	multi-exon	FALSE	canonical	3	18	junction_6	38.2023850331654	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGAGTACCTGTTTGTA	NA	False	NA	19	True	TATAAA	-26	NA	74085952	74108936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090812_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ENSMUSG00000057649.7_1	chr13	+	2411	16	NIC	ENSMUSG00000057649.7	novel	2430	16	NA	NA	3	8	combination_of_known_junctions	TRUE	canonical	3	32	junction_6	34.8873743478768	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTGTTTGTATTTATAAA	NA	False	NA	27	True	TATAAA	-34	NA	74085942	74108944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090749_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ENSMUSG00000057649.7_2	chr13	+	2339	16	FSM	ENSMUSG00000057649.7	ENSMUST00000099384.4	2407	16	-10	78	7	0	multi-exon	FALSE	canonical	3	92	junction_6	21.3306248280625	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGAGTACCTGTTTGTA	NA	False	NA	19	True	TATAAA	-26	NA	74085946	74108936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ENSMUSG00000057657.5_0	chr8	-	540	1	FSM	ENSMUSG00000057657.5	ENSMUST00000080443.8	456	1	-41	-43	-41	43	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATGAAAAAAAAAAAAAGAAT	NA	False	NA	-26	True	AATAAA	-15	NA	107989921	107989381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107989400_107989900
ENSMUSG00000057666.19_1	chr6	-	230	1	FSM	ENSMUSG00000057666.19	ENSMUST00000192506.2	3289	1	2919	140	443	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCTCCTTGGTTTTAAT	NA	False	NA	-17	True	AATAAA	-13	NA	125139047	125138817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_125138800_125139000
ENSMUSG00000057666.19_14	chr6	-	1423	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	1	204	junction_5	3916.70276933715	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTCTCCTTGGTTTTAA	NA	False	NA	-18	True	AATAAA	-12	NA	125142567	125138818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142059_125142275_125142514
ENSMUSG00000057666.19_2	chr6	-	1390	7	FSM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	30	0	30	0	multi-exon	FALSE	canonical	3	6089	junction_1	1931.60920967179	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142706	125138816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUSG00000057666.19_3	chr6	-	1260	6	ISM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	400	0	203	0	3prime_fragment	FALSE	canonical	3	6089	junction_1	2018.75426934533	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142336	125138816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233
ENSMUSG00000057666.19_4	chr6	-	1328	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	6	0	intron_retention	FALSE	canonical	3	6089	junction_1	1950.20942465162	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142560	125138816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_125139065_125139174_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUSG00000057666.19_6	chr6	-	857	2	FSM	ENSMUSG00000057666.19	ENSMUST00000147954.2	565	2	-293	1	-293	0	multi-exon	FALSE	canonical	3	6089	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125139783	125138816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_125139065_125139174
ENSMUSG00000057666.19_8	chr6	-	1367	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	245	junction_5	3903.40606251629	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142567	125138816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142117_125142275_125142514
ENSMUSG00000057666.19_9	chr6	-	1231	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	832	junction_5	4068.19726168729	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125141889	125138816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125141815
ENSMUSG00000057667.8_0	chr7	-	1828	2	FSM	ENSMUSG00000057667.8	ENSMUST00000077408.8	3188	2	32	1328	32	-1328	multi-exon	FALSE	canonical	3	24	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTACCCTCTTGAT	NA	False	NA	NA	False	NA	NA	NA	19242260	19239738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19241536_19242229
ENSMUSG00000057667.8_1	chr7	-	1378	1	ISM	ENSMUSG00000057667.8	ENSMUST00000077408.8	3188	2	1176	1328	1176	-1328	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTACCCTCTTGAT	NA	False	NA	NA	False	NA	NA	NA	19241116	19239738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_19239700_19241100
ENSMUSG00000057667.8_4	chr7	-	1837	2	NNC	ENSMUSG00000057667.8	novel	3188	2	NA	NA	15	-1328	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTACCCTCTTGAT	NA	False	NA	NA	False	NA	NA	NA	19242277	19239738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_19241536_19242237
ENSMUSG00000057672.17_0	chr8	-	2961	21	ISM	ENSMUSG00000057672.17	ENSMUST00000005616.16	6662	22	19	4052	7	-1	5prime_fragment	FALSE	canonical	3	231	junction_12	28.1539961639551	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCCGTTTGTCTGCAACC	NA	False	NA	-16	True	NA	NA	NA	84425789	84397216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84425595
ENSMUSG00000057672.17_10	chr8	-	2974	22	FSM	ENSMUSG00000057672.17	ENSMUST00000144258.8	2995	22	14	7	14	1	multi-exon	FALSE	canonical	3	45	junction_21	57.6705790816251	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGCATTTTCAGCCTCT	NA	False	NA	-25	True	TTTAAA	-26	NA	84420675	84396726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84420588
ENSMUSG00000057672.17_2	chr8	-	3077	22	FSM	ENSMUSG00000057672.17	ENSMUST00000005616.16	6662	22	22	3563	10	0	multi-exon	FALSE	canonical	3	231	junction_13	29.0604187256126	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATGCATTTTCAGCCTC	NA	False	NA	-26	True	TTTAAA	-25	NA	84425786	84396727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84425595
ENSMUSG00000057672.17_9	chr8	-	3154	21	NIC	ENSMUSG00000057672.17	novel	6662	22	NA	NA	9	2	intron_retention	TRUE	canonical	3	231	junction_12	29.7011784277998	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCATTTTCAGCCTCTG	NA	False	NA	-24	True	TTTAAA	-27	NA	84425787	84396725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84425595
ENSMUSG00000057691.9_0	chr6	-	3619	7	FSM	ENSMUSG00000057691.9	ENSMUST00000203609.3	3648	7	24	5	-23	-5	multi-exon	FALSE	canonical	3	21	junction_1	36.5714673238882	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAGGCTGTTTCATGGAT	1074	False	NA	-3	True	AATAAA	-12	NA	48063503	48039333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_48041884_48043362_48043489_48044102_48044295_48059087_48059202_48060026_48060109_48060239_48060540_48063248
ENSMUSG00000057691.9_1	chr6	-	3598	7	FSM	ENSMUSG00000057691.9	ENSMUST00000073124.9	3651	7	48	5	1	-5	multi-exon	FALSE	canonical	3	32	junction_1	32.8988348324577	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAGGCTGTTTCATGGAT	1098	False	NA	-3	True	AATAAA	-12	NA	48063479	48039333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_48041887_48043362_48043489_48044102_48044295_48059087_48059202_48060026_48060109_48060239_48060540_48063248
ENSMUSG00000057691.9_26	chr6	-	3478	6	NIC	ENSMUSG00000057691.9	novel	3651	7	NA	NA	-5	-5	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	46.4137910539529	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAGGCTGTTTCATGGAT	1092	False	NA	-3	True	AATAAA	-12	NA	48063485	48039333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_48041887_48044102_48044295_48059087_48059202_48060026_48060109_48060239_48060540_48063248
ENSMUSG00000057691.9_8	chr6	-	1318	6	ISM	ENSMUSG00000057691.9	ENSMUST00000073124.9	3651	7	24	3785	-23	31	5prime_fragment	FALSE	canonical	3	96	junction_1	16.8760184877832	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACTGTGAGACTAATTAT	1074	False	NA	NA	False	NA	NA	NA	48063503	48043113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_48043489_48044102_48044295_48059087_48059202_48060026_48060109_48060239_48060540_48063248
ENSMUSG00000057691.9_9	chr6	-	2189	1	ISM	ENSMUSG00000057691.9	ENSMUST00000073124.9	3651	7	22005	5	2772	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAGGCTGTTTCATGGAT	7425	False	NA	-3	True	AATAAA	-12	NA	48041522	48039333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_48039300_48041500
ENSMUSG00000057706.8_0	chr7	+	3386	2	FSM	ENSMUSG00000057706.8	ENSMUST00000082237.7	3355	2	17	-48	17	48	multi-exon	FALSE	canonical	3	9	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAAATCACTGTTGTAT	NA	False	NA	NA	False	AATAAA	-7	NA	82516557	82520771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_82517136_82517963
ENSMUSG00000057706.8_1	chr7	+	2297	1	Genic_Genomic	ENSMUSG00000057706.8	novel	NA	NA	NA	NA	1930	44	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGAAGAAAAATCACTGTT	NA	False	NA	NA	False	AATAAA	-3	NA	82518470	82520767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_+_82518500_82520800
ENSMUSG00000057715.14_0	chr1	+	2871	8	FSM	ENSMUSG00000057715.14	ENSMUST00000171690.9	6158	8	62	3225	55	-1407	multi-exon	FALSE	canonical	3	8	junction_7	6.29868791001389	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCATGCATGGAAAAGTAAT	NA	False	NA	NA	False	AATAAA	-16	NA	11484390	11668810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658771_11666374_11666542_11667188
ENSMUSG00000057715.14_14	chr1	+	1275	1	ISM	ENSMUSG00000057715.14	ENSMUST00000171690.9	6158	8	186432	0	21231	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATTAACATTATGTTA	NA	False	NA	NA	False	AATAAA	-11	NA	11670760	11672035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_11670800_11672000
ENSMUSG00000057715.14_2	chr1	+	3458	6	NIC	ENSMUSG00000057715.14	novel	6451	7	NA	NA	3	-1397	intron_retention	FALSE	canonical	2	7	junction_3	7.22218803410712	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGTAATCTGTAAATGT	NA	False	NA	NA	False	AATAAA	-26	NA	11484331	11668820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_11484862_11582141_11582290_11588801_11588934_11633186_11633216_11658597_11658771_11666374
ENSMUSG00000057715.14_6	chr1	+	1449	7	NIC	ENSMUSG00000057715.14	novel	6158	8	NA	NA	26	633	combination_of_known_splicesites	FALSE	canonical	2	7	junction_3	7.80313327381308	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATATATTTATATGTAA	NA	False	NA	NA	False	AAAAAG	-5	NA	11484361	11667488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_11484862_11582141_11582290_11588801_11588934_11633186_11633216_11658597_11658771_11666374_11666542_11667188
ENSMUSG00000057715.14_7	chr1	+	3388	7	FSM	ENSMUSG00000057715.14	ENSMUST00000135014.8	6451	7	31	3032	31	-1404	multi-exon	FALSE	canonical	3	15	junction_4	4.57043640026736	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCATGGAAAAGTAATCTG	NA	False	NA	NA	False	AATAAA	-19	NA	11484523	11668813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658771_11666374
ENSMUSG00000057715.14_8	chr1	+	6820	7	ISM	ENSMUSG00000057715.14	ENSMUST00000141512.8	1816	11	-2	331934	-2	-5	5prime_fragment	FALSE	canonical	0	0	junction_6	9.12262145560267	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTTTAAAAAATTAACATTA	NA	False	NA	NA	False	AATAAA	-6	NA	11484333	11672030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658796_11666374
ENSMUSG00000057722.18_2	chr4	+	5500	19	FSM	ENSMUSG00000057722.18	ENSMUST00000106921.9	5542	19	37	5	34	-5	multi-exon	FALSE	canonical	0	0	junction_5	1.86007433808702	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACATTTGTCTTTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	101574637	101670859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_101575136_101585206_101585267_101590463_101590794_101592756_101592881_101602707_101602914_101607483_101607627_101609257_101609403_101622057_101622349_101622500_101622619_101625243_101625444_101628493_101628643_101630032_101630193_101631397_101631481_101637101_101637319_101639741_101639925_101646459_101646556_101647997_101648104_101649191_101649268_101668544
ENSMUSG00000057722.18_3	chr4	+	3303	18	FSM	ENSMUSG00000057722.18	ENSMUST00000102777.10	3410	18	5	102	2	0	multi-exon	FALSE	canonical	0	0	junction_5	1.90791467532081	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTATGTTGTTGTGTTCA	NA	False	NA	NA	False	TTTAAA	-13	NA	101574605	101649353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_101575136_101585206_101585267_101590463_101590794_101592756_101592881_101602707_101602914_101607483_101607627_101609257_101609403_101622057_101622349_101622500_101622619_101625243_101625444_101628493_101628643_101630032_101630193_101631397_101631481_101637101_101637319_101639741_101639925_101646459_101646556_101647997_101648104_101649191
ENSMUSG00000057722.18_4	chr4	+	181	1	ISM	ENSMUSG00000057722.18	ENSMUST00000106921.9	5542	19	94437	1646	22927	-1646	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	101669037	101669218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_101669000_101669200
ENSMUSG00000057738.15_1	chr2	+	7822	55	FSM	ENSMUSG00000057738.15	ENSMUST00000046257.14	7820	55	-5	3	1	0	multi-exon	TRUE	canonical	3	215	junction_7	89.7303917849273	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGCTTTGCTCCTCTTTA	NA	False	NA	18	True	AATAAA	-18	NA	29855689	29921460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29855798_29868388_29868629_29870088_29870215_29873171_29873313_29873625_29873773_29876176_29876311_29876406_29876552_29876789_29876945_29878345_29878482_29880953_29881056_29881870_29882009_29882648_29882760_29883624_29883703_29883811_29883968_29884172_29884378_29885407_29885590_29886032_29886277_29886435_29886559_29886748_29886967_29888167_29888261_29889137_29889273_29889925_29890075_29892242_29892442_29893326_29893432_29893685_29893710_29894516_29894553_29896634_29896683_29897505_29897598_29897854_29898000_29898085_29898268_29900710_29900811_29900921_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
ENSMUSG00000057738.15_111	chr2	+	4502	33	ISM	ENSMUSG00000057738.15	ENSMUST00000046257.14	7820	55	36602	3	401	0	3prime_fragment	FALSE	canonical	3	310	junction_5	67.0201622531421	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGCTTTGCTCCTCTTTA	300	False	NA	18	True	AATAAA	-18	NA	29892296	29921460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_29892442_29893326_29893432_29893685_29893710_29894516_29894553_29896634_29896683_29897505_29897598_29897854_29898000_29898085_29898268_29900710_29900811_29900921_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
ENSMUSG00000057738.15_126	chr2	+	3582	24	ISM	ENSMUSG00000057738.15	ENSMUST00000046257.14	7820	55	45269	4	6864	-1	3prime_fragment	FALSE	canonical	3	342	junction_1	61.8830838602354	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGGCTTTGCTCCTCTTT	7900	False	NA	17	True	AATAAA	-17	NA	29900963	29921459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
ENSMUSG00000057738.15_4	chr2	+	7882	56	FSM	ENSMUSG00000057738.15	ENSMUST00000095083.11	7883	56	-2	3	1	0	multi-exon	FALSE	canonical	3	62	junction_22	102.057131949797	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGCTTTGCTCCTCTTTA	NA	False	NA	18	True	AATAAA	-18	NA	29855689	29921460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29855798_29868388_29868629_29870088_29870215_29873171_29873313_29873625_29873773_29876176_29876311_29876406_29876552_29876789_29876945_29878345_29878482_29880953_29881056_29881870_29882009_29882648_29882760_29883624_29883703_29883811_29883968_29884172_29884378_29885407_29885590_29886032_29886277_29886435_29886559_29886748_29886967_29888167_29888261_29889137_29889273_29889925_29890075_29891111_29891172_29892242_29892442_29893326_29893432_29893685_29893710_29894516_29894553_29896634_29896683_29897505_29897598_29897854_29898000_29898085_29898268_29900710_29900811_29900921_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
ENSMUSG00000057751.15_0	chr4	+	5738	37	FSM	ENSMUSG00000057751.15	ENSMUST00000030897.15	6851	37	-18	1131	-18	454	multi-exon	FALSE	canonical	0	0	junction_13	2.35636778449428	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTTCTTCCTGACTTCCA	NA	False	NA	NA	False	NA	NA	NA	154255168	154359039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_154255600_154261495_154261631_154267114_154267225_154308557_154308681_154326858_154326982_154333883_154334010_154335278_154335402_154336585_154336709_154336880_154337019_154337482_154337603_154338171_154338295_154338565_154338737_154338998_154339131_154340452_154340582_154342557_154342687_154343316_154343452_154343537_154343673_154346970_154347097_154347626_154347759_154347849_154347979_154348102_154348235_154349526_154349656_154349743_154349873_154350116_154350246_154350590_154350720_154350907_154351037_154351646_154351776_154351889_154352019_154352112_154352245_154352390_154352520_154353032_154353162_154354103_154354233_154354349_154354479_154354858_154354988_154355079_154355209_154356067_154356197_154358264
ENSMUSG00000057751.15_6	chr4	+	1882	11	ISM	ENSMUSG00000057751.15	ENSMUST00000127088.8	3378	17	2628	735	1072	321	3prime_fragment	FALSE	canonical	1	2	junction_8	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTGGGTTTCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	154351699	154358906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_154351776_154351889_154352019_154352112_154352245_154352390_154352520_154353032_154353162_154354103_154354233_154354349_154354479_154354858_154354988_154355079_154355209_154356067_154356197_154358264
ENSMUSG00000057762.7_0	chr13	-	1091	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	-91	30	-91	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-23	NA	97235836	97234745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_97234700_97235800
ENSMUSG00000057778.15_0	chr11	-	2115	4	FSM	ENSMUSG00000057778.15	ENSMUST00000156294.8	2158	4	59	-16	11	-1	multi-exon	FALSE	canonical	3	6	junction_2	3.55902608401044	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGCTTTTTTTTCTTTT	NA	False	NA	-1	True	AATAAA	-35	NA	72686909	72668058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_72669779_72673473_72673661_72679902_72680044_72686842
ENSMUSG00000057778.15_1	chr11	-	1399	1	ISM	ENSMUSG00000057778.15	ENSMUST00000079681.6	2393	4	17225	1	17210	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGCTTTTTTTTCTTTT	NA	False	NA	-1	True	AATAAA	-35	NA	72669457	72668058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72668100_72669500
ENSMUSG00000057778.15_2	chr11	-	2357	4	FSM	ENSMUSG00000057778.15	ENSMUST00000079681.6	2393	4	35	1	20	-1	multi-exon	FALSE	canonical	2	5	junction_3	4.02768199119819	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGCTTTTTTTTCTTTT	NA	False	NA	-1	True	AATAAA	-35	NA	72686647	72668058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_72669779_72673473_72673661_72679902_72680044_72686338
ENSMUSG00000057778.15_3	chr11	-	2045	3	ISM	ENSMUSG00000057778.15	ENSMUST00000079681.6	2393	4	6642	1	6627	-1	3prime_fragment	FALSE	canonical	3	6	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGCTTTTTTTTCTTTT	NA	False	NA	-1	True	AATAAA	-35	NA	72680040	72668058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72669779_72673473_72673661_72679902
ENSMUSG00000057788.14_0	chr8	-	1530	13	FSM	ENSMUSG00000057788.14	ENSMUST00000008004.10	2137	13	21	586	-5	134	multi-exon	TRUE	canonical	3	250	junction_9	19.6148682268211	265	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTGACTTGAGAATGGGG	9952	False	NA	-6	True	AGTAAA	-18	NA	70755118	70746101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
ENSMUSG00000057789.15_0	chr17	-	1948	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	435	4	4	-2	multi-exon	TRUE	canonical	3	126	junction_3	5.45527267879434	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCTCGCCTGGCATCTT	NA	False	NA	-4	True	AATAAA	-16	NA	27247548	27238787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
ENSMUSG00000057789.15_1	chr17	-	504	1	ISM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	8692	4	8261	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCTCGCCTGGCATCTT	5780	False	NA	-4	True	AATAAA	-16	NA	27239291	27238787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27238800_27239300
ENSMUSG00000057835.8_0	chr17	-	2026	4	FSM	ENSMUSG00000057835.8	ENSMUST00000079642.8	2018	4	-11	3	-11	-3	multi-exon	FALSE	canonical	3	17	junction_3	5.43650214343336	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTTCATTCTCTTGGAT	NA	False	NA	NA	False	AATAAA	-13	NA	56185941	56171894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56173651_56175302_56175364_56175558_56175686_56185859
ENSMUSG00000057835.8_3	chr17	-	2144	4	NNC	ENSMUSG00000057835.8	novel	2018	4	NA	NA	317	-3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	9.67241208569794	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTTCATTCTCTTGGAT	NA	False	NA	NA	False	AATAAA	-13	NA	56185613	56171894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_56173651_56175302_56175364_56175558_56175686_56185413
ENSMUSG00000057836.13_16	chrX	-	1595	9	FSM	ENSMUSG00000057836.13	ENSMUST00000114524.9	1584	9	-14	3	-8	-1	multi-exon	FALSE	non_canonical	0	0	junction_7	496.010190797528	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72140637	72129901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
ENSMUSG00000057836.13_17	chrX	-	1546	8	ISM	ENSMUSG00000057836.13	ENSMUST00000114524.9	1584	9	1933	3	-81	-1	3prime_fragment	FALSE	non_canonical	0	0	junction_7	530.223133622602	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72138690	72129901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551
ENSMUSG00000057836.13_18	chrX	-	1576	9	FSM	ENSMUSG00000057836.13	ENSMUST00000074619.6	1645	9	68	1	-4	-1	multi-exon	FALSE	canonical	3	586	junction_7	340.598531081683	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72140633	72129901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138566_72138689_72140586
ENSMUSG00000057841.6_0	chr6	-	506	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	4	7	4	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	2900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	25	True	AATAAA	-15	NA	115785704	115782472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
ENSMUSG00000057841.6_2	chr6	-	461	3	FSM	ENSMUSG00000057841.6	ENSMUST00000203816.2	906	3	445	0	445	0	multi-exon	FALSE	canonical	3	17944	junction_1	6	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	25	True	AATAAA	-15	NA	115784864	115782472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_115782650_115783946_115784129_115784762
ENSMUSG00000057842.15_10	chr13	-	3216	1	NIC	ENSMUSG00000057842.15	novel	3896	5	NA	NA	890	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACACAAAACTCAGTT	NA	False	NA	NA	False	NA	NA	NA	67464277	67461061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_67461100_67464300
ENSMUSG00000057842.15_2	chr13	-	3868	4	FSM	ENSMUSG00000057842.15	ENSMUST00000168892.9	4040	4	9	163	-1	-163	multi-exon	FALSE	canonical	2	3	junction_1	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCATGGTTTGATGTC	3622	False	NA	-1	True	NA	NA	NA	67480625	67462491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67466042_67468335_67468432_67468891_67469019_67480530
ENSMUSG00000057858.9_1	chr19	-	1662	9	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	-2	1	intron_retention	FALSE	canonical	3	13	junction_8	105.606507256892	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTGTGTGTGTGTGTA	9791	False	NA	NA	False	AGTAAA	-15	NA	60215111	60187329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60213296_60213332_60214741
ENSMUSG00000057858.9_11	chr19	-	1751	9	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	2	-1	intron_retention	FALSE	canonical	3	10	junction_8	106.243529214724	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTGTGTGTGTGTG	9778	False	NA	NA	False	AGTAAA	-13	NA	60215124	60187331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60213296_60213332_60214663
ENSMUSG00000057858.9_2	chr19	-	1699	8	FSM	ENSMUSG00000057858.9	ENSMUST00000065286.2	2035	8	18	318	-2	-5	multi-exon	FALSE	canonical	3	51	junction_7	81.0915330641484	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTATTTTTTTTGTGTGTG	9791	False	NA	NA	False	AGTAAA	-9	NA	60215111	60187335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214663
ENSMUSG00000057858.9_23	chr19	-	1298	6	NIC	ENSMUSG00000057858.9	novel	1598	7	NA	NA	3	-1	intron_retention	FALSE	canonical	2	3	junction_5	111.662706397436	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTGTGTGTGTGTG	9779	False	NA	NA	False	AGTAAA	-13	NA	60215123	60187331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60214741
ENSMUSG00000057858.9_3	chr19	-	1619	7	FSM	ENSMUSG00000057858.9	ENSMUST00000235293.2	1598	7	-6	-15	3	-1	multi-exon	FALSE	canonical	3	31	junction_5	113.09533834582	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTGTGTGTGTGTG	9787	False	NA	NA	False	AGTAAA	-13	NA	60215115	60187331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214663
ENSMUSG00000057858.9_5	chr19	-	1628	8	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	3	-2	intron_retention	FALSE	canonical	3	98	junction_7	67.6669515090684	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTTTTTGTGTGTGTGT	9787	False	NA	NA	False	AGTAAA	-12	NA	60215115	60187332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
ENSMUSG00000057858.9_8	chr19	-	1538	7	NIC	ENSMUSG00000057858.9	novel	1598	7	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	31	junction_5	103.870779764517	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTGTGTGTGTGTG	9790	False	NA	NA	False	AGTAAA	-13	NA	60215112	60187331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214741
ENSMUSG00000057858.9_9	chr19	-	1306	8	FSM	ENSMUSG00000057858.9	ENSMUST00000238054.2	951	8	-8	-347	0	-1	multi-exon	FALSE	canonical	3	34	junction_7	86.2054972440971	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTGTGTGTGTGTG	9776	False	NA	NA	False	AGTAAA	-13	NA	60215126	60187331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60215075
ENSMUSG00000057863.7_0	chr17	+	385	4	FSM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	0	-2	0	2	multi-exon	FALSE	canonical	3	5436	junction_1	2487.77200634535	1394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGTGTATGTGTGAGC	NA	False	NA	1	True	AATAAA	-14	NA	56920415	56921245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56920449_56920585_56920681_56920906_56921042_56921123
ENSMUSG00000057863.7_9	chr17	+	353	3	ISM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	167	0	167	0	3prime_fragment	FALSE	canonical	3	9970	junction_2	629.5	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGTGTATGTGTGA	NA	False	NA	-1	True	AATAAA	-12	NA	56920582	56921243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_56920681_56920906_56921042_56921123
ENSMUSG00000057880.13_0	chr16	+	4577	16	FSM	ENSMUSG00000057880.13	ENSMUST00000065987.14	4636	16	51	8	-1	-8	multi-exon	FALSE	canonical	2	6	junction_13	3.20138858761146	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGGAAATGTCAGAGTGAA	NA	False	NA	-4	True	ATTAAA	-14	NA	8331343	8439424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_8331439_8390699_8390815_8396094_8396193_8399762_8399793_8400600_8400719_8406749_8406800_8418773_8418855_8420149_8420243_8421333_8421397_8421552_8421617_8423375_8423525_8426719_8426858_8428990_8429159_8431846_8431994_8433753_8433866_8436368
ENSMUSG00000057880.13_1	chr16	+	2394	15	FSM	ENSMUSG00000057880.13	ENSMUST00000115839.9	2414	15	-3	23	1	-23	multi-exon	FALSE	canonical	1	1	junction_12	3.90251096561364	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTATAAAGGCATAAGGAC	NA	False	NA	NA	False	NA	NA	NA	8331345	8437411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_8331439_8390699_8390815_8396094_8396193_8399762_8399793_8400600_8400719_8406749_8406800_8418773_8418855_8420149_8420243_8421333_8421397_8421552_8421617_8423375_8423525_8426719_8426858_8431846_8431994_8433753_8433866_8436368
ENSMUSG00000057894.11_1	chr7	-	2982	1	NIC	ENSMUSG00000057894.11	novel	2577	4	NA	NA	-1007	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-6	NA	12543009	12540027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_12540000_12543000
ENSMUSG00000057894.11_2	chr7	-	5601	2	FSM	ENSMUSG00000057894.11	ENSMUST00000072222.8	6727	2	5	1121	-1	-6	multi-exon	FALSE	canonical	3	14	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTAGCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-4	NA	12552780	12540029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12545594_12552743
ENSMUSG00000057894.11_6	chr7	-	4934	3	NIC	ENSMUSG00000057894.11	novel	2564	4	NA	NA	-1	-469	intron_retention	FALSE	canonical	3	4	junction_1	5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGACATTTCAGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	12552780	12539377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_12540520_12541838_12545594_12552743
ENSMUSG00000057894.11_8	chr7	-	969	1	ISM	ENSMUSG00000057894.11	ENSMUST00000108546.2	2577	4	12909	0	2130	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTTAAAAATTGTATTT	NA	False	NA	-7	True	NA	NA	NA	12539872	12538903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_12538900_12539900
ENSMUSG00000057895.12_1	chr9	+	2000	4	FSM	ENSMUSG00000057895.12	ENSMUST00000051667.14	2010	4	0	10	0	-10	multi-exon	FALSE	canonical	3	61	junction_1	7.71722460186015	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGCCAAGGACTTTGTT	4874	False	NA	1	True	AATAAA	-12	NA	122752136	122760083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_122752284_122754072_122754362_122755374_122755520_122758664
ENSMUSG00000057895.12_3	chr9	+	1819	3	ISM	ENSMUSG00000057895.12	ENSMUST00000051667.14	2010	4	1967	13	1940	-13	3prime_fragment	FALSE	canonical	3	65	junction_2	7	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTAAAAGCCAAGGACTTT	6841	False	NA	-2	True	AATAAA	-9	NA	122754103	122760080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_122754362_122755374_122755520_122758664
ENSMUSG00000057895.12_5	chr9	+	1266	1	ISM	ENSMUSG00000057895.12	ENSMUST00000051667.14	2010	4	6682	9	6655	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCAAGGACTTTGTTT	NA	False	NA	2	True	AATAAA	-13	NA	122758818	122760084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_122758800_122760100
ENSMUSG00000057897.15_11	chr11	-	3901	20	NIC	ENSMUSG00000057897.15	novel	4004	20	NA	NA	16	0	intron_retention	FALSE	canonical	3	32	junction_5	33.5580697347349	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	2980	False	NA	NA	False	NA	NA	NA	6015642	5919671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5926764_5926894_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
ENSMUSG00000057897.15_3	chr11	-	3782	19	FSM	ENSMUSG00000057897.15	ENSMUST00000002817.12	1872	19	90	-2000	6	0	multi-exon	FALSE	canonical	3	94	junction_4	16.5324223165972	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	2970	False	NA	NA	False	NA	NA	NA	6015652	5919671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
ENSMUSG00000057897.15_5	chr11	-	4038	21	FSM	ENSMUSG00000057897.15	ENSMUST00000093355.12	1973	21	-68	-1997	8	0	multi-exon	FALSE	canonical	3	14	junction_5	41.4625131896271	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	2972	False	NA	NA	False	NA	NA	NA	6015650	5919671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5926764_5926894_5927811_5927941_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
ENSMUSG00000057897.15_8	chr11	-	1668	1	ISM	ENSMUSG00000057897.15	ENSMUST00000109813.9	4023	21	94409	28	12799	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5921339	5919671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_5919700_5921300
ENSMUSG00000057933.11_0	chr9	-	858	7	FSM	ENSMUSG00000057933.11	ENSMUST00000034902.12	870	7	11	1	11	-1	multi-exon	FALSE	canonical	3	15	junction_6	11.4260910006684	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCTCCTCATAAGTTCT	NA	False	NA	0	True	AATAAA	-16	NA	78254429	78238300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78254370
ENSMUSG00000057933.11_2	chr9	-	952	7	NIC	ENSMUSG00000057933.11	novel	870	7	NA	NA	-3889	-3	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	12.0369800568452	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATATGCTCCTCATAAGTT	NA	False	NA	-2	True	AATAAA	-14	NA	78249923	78238302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78249768
ENSMUSG00000057948.13_0	chr11	-	3975	32	FSM	ENSMUSG00000057948.13	ENSMUST00000106450.8	4046	32	70	1	-56	0	multi-exon	FALSE	canonical	3	18	junction_15	5.60845207266718	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAATCTATAGTTGGCT	NA	False	NA	-2	True	AATAAA	-25	NA	115968506	115952921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960706_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273
ENSMUSG00000057948.13_11	chr11	-	3687	30	ISM	ENSMUSG00000057948.13	ENSMUST00000106450.8	4046	32	1220	1	521	0	3prime_fragment	FALSE	canonical	3	18	junction_15	5.78509298389771	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAATCTATAGTTGGCT	NA	False	NA	-2	True	AATAAA	-25	NA	115967356	115952921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960706_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967156_115967267
ENSMUSG00000057948.13_13	chr11	-	4101	32	FSM	ENSMUSG00000057948.13	ENSMUST00000174822.8	3337	32	-227	-537	-67	-5	multi-exon	FALSE	canonical	1	1	junction_16	7.27117096203969	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTCAGAAAAATCTATAGT	NA	False	NA	-7	True	AATAAA	-20	NA	115968643	115952926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960712_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273
ENSMUSG00000057948.13_2	chr11	-	4060	33	NNC	ENSMUSG00000057948.13	novel	3973	33	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_32	7.09801633821028	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAATCTATAGTTGGCT	NA	False	NA	-2	True	AATAAA	-25	NA	115968745	115952921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960706_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273_115968485_115968638
ENSMUSG00000057948.13_20	chr11	-	3972	33	FSM	ENSMUSG00000057948.13	ENSMUST00000106451.8	3973	33	-1	2	-1	-2	multi-exon	FALSE	canonical	2	6	junction_32	6.68246013362594	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAAAAATCTATAGTTGG	NA	False	NA	-4	True	AATAAA	-23	NA	115968788	115952923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960706_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273_115968488_115968770
ENSMUSG00000057948.13_6	chr11	-	4005	32	NIC	ENSMUSG00000057948.13	novel	3973	33	NA	NA	-118	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_31	7.42790531141159	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAATCTATAGTTGGCT	NA	False	NA	-2	True	AATAAA	-25	NA	115967995	115952921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960706_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115967732
ENSMUSG00000057948.13_7	chr11	-	3925	31	NIC	ENSMUSG00000057948.13	novel	3973	33	NA	NA	72	0	intron_retention	FALSE	canonical	3	18	junction_15	5.0403924009501	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAATCTATAGTTGGCT	NA	False	NA	-2	True	AATAAA	-25	NA	115968344	115952921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960706_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967376_115967577_115967614_115968273
ENSMUSG00000057948.13_8	chr11	-	3288	26	ISM	ENSMUSG00000057948.13	ENSMUST00000106450.8	4046	32	3308	1	2609	0	3prime_fragment	TRUE	canonical	3	18	junction_15	4.06664480868443	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAATCTATAGTTGGCT	NA	False	NA	-2	True	AATAAA	-25	NA	115965268	115952921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960706_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225
ENSMUSG00000057963.10_0	chr12	-	2913	10	FSM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	-3	8	-3	-8	multi-exon	TRUE	canonical	3	205	junction_5	27.4851250454756	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGCATTCTGTACGTGG	2404	False	NA	-9	True	AATAAA	-12	NA	102671192	102534848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_102536744_102540180_102540344_102545363_102545432_102550545_102550712_102554154_102554196_102554722_102554822_102572347_102572466_102589558_102589685_102641701_102641727_102670980
ENSMUSG00000057963.10_27	chr12	-	377	1	ISM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	134524	1448	23671	-1448	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTCTCTGTTTTAATTT	NA	False	NA	-2	True	NA	NA	NA	102536665	102536288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_102536300_102536700
ENSMUSG00000057963.10_9	chr12	-	1262	1	ISM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	135084	3	24231	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTCTGTACGTGGTCACA	NA	False	NA	-4	True	AATAAA	-17	NA	102536105	102534843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_102534800_102536100
ENSMUSG00000057967.13_0	chr11	-	1943	5	FSM	ENSMUSG00000057967.13	ENSMUST00000020507.8	1086	5	-417	-440	-417	440	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAACAACAACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33097817	33066989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_33068032_33074612_33074720_33084202_33084384_33097044_33097082_33097241
ENSMUSG00000057969.16_0	chr9	-	2745	17	ISM	ENSMUSG00000057969.16	ENSMUST00000102529.10	2875	18	247	-1	114	0	3prime_fragment	FALSE	canonical	3	40	junction_12	7.52054477747457	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGGAATGGCCCCAGCA	8405	False	NA	-23	True	AATAAA	-15	NA	107482354	107475552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167
ENSMUSG00000057969.16_3	chr9	-	3017	19	ISM	ENSMUSG00000057969.16	ENSMUST00000102530.8	3410	21	2519	1	1	0	3prime_fragment	FALSE	canonical	0	0	junction_18	15.5384826944089	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGGAATGGCCCCAGCA	6880	False	NA	-23	True	AATAAA	-15	NA	107483879	107475552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107483748
ENSMUSG00000057969.16_33	chr9	-	3150	20	FSM	ENSMUSG00000057969.16	ENSMUST00000102532.10	3191	20	36	5	0	-5	multi-exon	TRUE	canonical	2	3	junction_18	17.1961150028469	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACGACTACGCTGGTTCCA	4367	False	NA	-7	True	ATTAAA	-10	NA	107486392	107475420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107484232_107484292_107486319
ENSMUSG00000057969.16_4	chr9	-	331	1	ISM	ENSMUSG00000057969.16	ENSMUST00000123926.8	3433	18	6860	657	2645	22	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGGTAGTCCTAGACCTT	NA	False	NA	0	True	AATAAA	-38	NA	107475860	107475529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_107475500_107475900
ENSMUSG00000057969.16_40	chr9	-	2268	14	ISM	ENSMUSG00000057969.16	ENSMUST00000102529.10	2875	18	2055	-1	-1181	0	3prime_fragment	FALSE	canonical	3	40	junction_12	8.19438399112971	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGGAATGGCCCCAGCA	NA	False	NA	-23	True	AATAAA	-15	NA	107480546	107475552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495
ENSMUSG00000057982.9_0	chr9	+	3111	5	FSM	ENSMUSG00000057982.9	ENSMUST00000215618.2	1313	5	-34	-1764	4	1112	multi-exon	FALSE	canonical	3	112	junction_4	21.3717102731625	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGATTTATTTTTTA	744	False	NA	NA	False	NA	NA	NA	22137013	22152503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837
ENSMUSG00000057982.9_11	chr9	+	942	2	FSM	ENSMUSG00000057982.9	ENSMUST00000213350.2	597	2	-7	-338	2	338	multi-exon	FALSE	canonical	3	166	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	742	False	NA	NA	False	NA	NA	NA	22137011	22147140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_22137129_22146315
ENSMUSG00000057982.9_3	chr9	+	3184	5	FSM	ENSMUSG00000057982.9	ENSMUST00000213371.2	1766	5	2	-1420	2	1018	multi-exon	FALSE	canonical	3	33	junction_2	49.3273504254992	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATTTTTTATTGATAG	751	False	NA	NA	False	NA	NA	NA	22137020	22152409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_22137129_22146315_22146443_22147323_22147591_22148970_22149081_22149837
ENSMUSG00000058006.13_32	chr4	+	4892	24	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	92637	9	-815	0	3prime_fragment	FALSE	canonical	3	51	junction_5	33.8587078651663	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGATCAGGGTTTAC	NA	False	NA	11	True	ATTAAA	-14	NA	32749755	32775198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32750036_32750249_32750477_32750912_32751069_32751211_32751394_32752030_32752193_32754429_32754568_32756376_32756516_32757736_32757907_32758355_32758500_32759049_32759198_32760619_32760943_32761203_32761372_32762251_32762354_32763156_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ENSMUSG00000058006.13_34	chr4	+	4513	23	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	93226	13	-226	-4	3prime_fragment	FALSE	canonical	3	51	junction_4	32.9581502730582	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAATCTTTGATCAGGGT	NA	False	NA	7	True	ATTAAA	-10	NA	32750344	32775194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32750477_32750912_32751069_32751211_32751394_32752030_32752193_32754429_32754568_32756376_32756516_32757736_32757907_32758355_32758500_32759049_32759198_32760619_32760943_32761203_32761372_32762251_32762354_32763156_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ENSMUSG00000058006.13_46	chr4	+	173	1	ISM	ENSMUSG00000058006.13	ENSMUST00000138577.2	2265	3	2872	0	2872	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	2749	False	NA	NA	False	NA	NA	NA	32753442	32753615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32753400_32753600
ENSMUSG00000058006.13_47	chr4	+	3822	19	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	97375	8	3923	1	3prime_fragment	FALSE	canonical	3	60	junction_1	28.6084680548338	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTGATCAGGGTTTACT	58	False	NA	12	True	ATTAAA	-15	NA	32754493	32775199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32754568_32756376_32756516_32757736_32757907_32758355_32758500_32759049_32759198_32760619_32760943_32761203_32761372_32762251_32762354_32763156_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ENSMUSG00000058006.13_51	chr4	+	3673	18	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	99328	13	5876	-4	3prime_fragment	FALSE	canonical	3	65	junction_1	26.1289058933471	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAATCTTTGATCAGGGT	2011	False	NA	7	True	ATTAAA	-10	NA	32756446	32775194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32756516_32757736_32757907_32758355_32758500_32759049_32759198_32760619_32760943_32761203_32761372_32762251_32762354_32763156_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ENSMUSG00000058006.13_52	chr4	+	3555	17	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	100678	2	-5068	-2	3prime_fragment	FALSE	canonical	3	82	junction_3	23.2841650859549	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCAGGGTTTACTTTGGTT	3361	False	NA	18	True	ATTAAA	-21	NA	32757796	32775205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32757907_32758355_32758500_32759049_32759198_32760619_32760943_32761203_32761372_32762251_32762354_32763156_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ENSMUSG00000058006.13_55	chr4	+	3255	15	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	101968	11	-3778	-2	3prime_fragment	FALSE	canonical	3	82	junction_1	21.8925949646385	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCTTTGATCAGGGTTT	4651	False	NA	9	True	ATTAAA	-12	NA	32759086	32775196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32759198_32760619_32760943_32761203_32761372_32762251_32762354_32763156_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ENSMUSG00000058006.13_56	chr4	+	2921	14	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	103726	9	-2020	0	3prime_fragment	FALSE	canonical	3	98	junction_3	19.0520930220464	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGATCAGGGTTTAC	1727	False	NA	11	True	ATTAAA	-14	NA	32760844	32775198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32760943_32761203_32761372_32762251_32762354_32763156_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ENSMUSG00000058006.13_57	chr4	+	2802	13	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	104106	9	-1640	0	3prime_fragment	FALSE	canonical	3	98	junction_2	18.4360757453664	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGATCAGGGTTTAC	2107	False	NA	11	True	ATTAAA	-14	NA	32761224	32775198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32761372_32762251_32762354_32763156_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ENSMUSG00000058006.13_60	chr4	+	2438	11	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	106149	13	403	-4	3prime_fragment	FALSE	canonical	3	104	junction_1	14.7610975201711	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAATCTTTGATCAGGGT	4150	False	NA	7	True	ATTAAA	-10	NA	32763267	32775194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ENSMUSG00000058006.13_62	chr4	+	2307	10	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	108036	13	2290	-4	3prime_fragment	FALSE	canonical	3	119	junction_2	10.7920867214116	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAATCTTTGATCAGGGT	6037	False	NA	7	True	ATTAAA	-10	NA	32765154	32775194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ENSMUSG00000058006.13_67	chr4	+	1734	6	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	111618	10	5872	-1	3prime_fragment	FALSE	canonical	3	131	junction_1	9.00222194794152	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTTTGATCAGGGTTTA	398	False	NA	10	True	ATTAAA	-13	NA	32768736	32775197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
ENSMUSG00000058006.13_70	chr4	+	946	1	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	117135	8	11389	1	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTGATCAGGGTTTACT	5915	False	NA	12	True	ATTAAA	-15	NA	32774253	32775199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_32774300_32775200
ENSMUSG00000058013.12_3	chr5	+	5025	10	FSM	ENSMUSG00000058013.12	ENSMUST00000074733.11	5028	10	2	1	1	-1	multi-exon	FALSE	canonical	3	652	junction_7	47.9165942028438	1535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTGTGTGCCCGTTTGT	NA	False	NA	11	True	AATATA	-16	NA	93241297	93322816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93319197
ENSMUSG00000058013.12_59	chr5	+	2483	1	ISM	ENSMUSG00000058013.12	ENSMUST00000074733.11	5028	10	79038	1	23972	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTGTGTGCCCGTTTGT	NA	False	NA	11	True	AATATA	-16	NA	93320333	93322816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_93320300_93322800
ENSMUSG00000058022.15_0	chr13	-	1070	7	FSM	ENSMUSG00000058022.15	ENSMUST00000121404.8	1602	7	75	457	7	0	multi-exon	FALSE	canonical	3	17	junction_6	3.97562014729219	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTCTTGGGATCTCCT	NA	False	NA	-35	True	AATAAA	-13	NA	42001085	41918065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_41918269_41920811_41920964_41930983_41931100_41967690_41967793_41969613_41969749_41981618_41981862_42000966
ENSMUSG00000058028.15_0	chr7	+	1816	5	NIC	ENSMUSG00000058028.15	novel	1980	6	NA	NA	-20	-10	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATTCATCTATTCATTGA	3060	False	NA	NA	False	ATTAAA	-12	NA	6225256	6242412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_6225336_6233070_6233538_6234335_6234537_6236813_6236968_6241497
ENSMUSG00000058028.15_1	chr7	+	1973	6	FSM	ENSMUSG00000058028.15	ENSMUST00000072662.12	1980	6	0	7	0	-7	multi-exon	FALSE	canonical	2	4	junction_1	2.49799919935936	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATCTATTCATTGATTG	3080	False	NA	NA	False	ATTAAA	-15	NA	6225276	6242415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6225336_6227584_6227759_6233070_6233538_6234335_6234537_6236813_6236968_6241497
ENSMUSG00000058028.15_2	chr7	+	5740	4	FSM	ENSMUSG00000058028.15	ENSMUST00000165445.3	1407	4	-4107	-226	3777	-7	multi-exon	FALSE	canonical	3	6	junction_2	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATCTATTCATTGATTG	6874	False	NA	NA	False	ATTAAA	-15	NA	6229070	6242415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6233538_6234335_6234537_6236813_6236968_6241497
ENSMUSG00000058056.17_0	chr8	-	4229	12	FSM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	-40	4	-40	-4	multi-exon	FALSE	canonical	3	58	junction_8	23.5231554638234	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGACAGTTGGCCCTCTG	NA	False	NA	-12	True	AATAAA	-13	NA	62044216	61964470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387_61986610_61988719_61988819_61991721_61991858_62002604_62003280_62044093
ENSMUSG00000058056.17_1	chr8	-	3216	8	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	57547	4	246	-4	3prime_fragment	FALSE	canonical	3	101	junction_4	7.79848232226067	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGACAGTTGGCCCTCTG	NA	False	NA	-12	True	AATAAA	-13	NA	61986629	61964470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387
ENSMUSG00000058056.17_2	chr8	-	3028	7	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	59024	7	1723	-7	3prime_fragment	FALSE	canonical	3	101	junction_4	8.35497190632952	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGATGACAGTTGGCCCT	NA	False	NA	-15	True	AATAAA	-10	NA	61985152	61964473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945
ENSMUSG00000058056.17_3	chr8	-	3925	11	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	41075	7	-16226	-7	3prime_fragment	FALSE	canonical	3	58	junction_8	22.7949555823213	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGATGACAGTTGGCCCT	NA	False	NA	-15	True	AATAAA	-10	NA	62003101	61964473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387_61986610_61988719_61988819_61991721_61991858_62002604
ENSMUSG00000058056.17_7	chr8	-	1181	1	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	78528	1	3286	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAGTTGGCCCTCTGTGA	NA	False	NA	-9	True	AATAAA	-16	NA	61965648	61964467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_61964500_61965600
ENSMUSG00000058057.6_0	chr15	+	199	1	Genic_Genomic	ENSMUSG00000058057.6	novel	NA	NA	NA	NA	5255	7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAATAATAAAAAAACATA	9737	False	NA	NA	False	NA	NA	NA	100238064	100238263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_100238100_100238300
ENSMUSG00000058064.7_0	chr18	+	322	1	FSM	ENSMUSG00000058064.7	ENSMUST00000079733.7	534	1	248	-36	248	36	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATGCAAAAAAAAAGAAGG	NA	False	NA	NA	False	AATAAA	-33	NA	15966098	15966420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_15966100_15966400
ENSMUSG00000058070.15_1	chr12	+	3868	22	FSM	ENSMUSG00000058070.15	ENSMUST00000109860.8	4160	22	291	1	29	-1	multi-exon	TRUE	canonical	1	1	junction_11	3.09120616516523	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTTATTGACCTACGT	NA	False	NA	NA	False	AATAAA	-13	NA	108389365	108505822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_108389521_108429785_108429969_108438111_108438245_108454547_108454680_108468648_108468678_108472737_108472868_108475344_108475495_108476435_108476506_108478079_108478191_108479233_108479330_108480636_108480772_108481374_108481475_108482718_108482874_108487574_108487701_108487906_108488039_108493955_108494024_108496562_108496652_108500912_108501011_108501123_108501212_108502485_108502582_108503592_108503724_108504361
ENSMUSG00000058076.13_0	chr1	-	1165	6	FSM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	6	2000	-6	242	multi-exon	TRUE	canonical	3	578	junction_5	147.434866975217	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTGACTCTTTGGAATC	462	False	NA	-7	True	ATTAAA	-15	NA	170978166	170956733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978127
ENSMUSG00000058076.13_1	chr1	-	1128	5	ISM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	4789	2000	4774	242	3prime_fragment	FALSE	canonical	3	865	junction_4	43.5344691020805	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTGACTCTTTGGAATC	5245	False	NA	-7	True	ATTAAA	-15	NA	170973383	170956733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324
ENSMUSG00000058076.13_4	chr1	-	522	1	ISM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	20916	2001	20901	241	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTTGACTCTTTGGAAT	9248	False	NA	-8	True	ATTAAA	-14	NA	170957256	170956734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_170956700_170957300
ENSMUSG00000058093.14_1	chr13	-	4822	4	FSM	ENSMUSG00000058093.14	ENSMUST00000138725.3	855	4	15	-3982	15	-8	multi-exon	FALSE	canonical	3	11	junction_3	22.5437845585479	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTATCCTGGTTTGGT	NA	False	NA	-12	True	NA	NA	NA	67757791	67737565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67742035_67743334_67743431_67744767_67744895_67757661
ENSMUSG00000058093.14_3	chr13	-	2447	1	ISM	ENSMUSG00000058093.14	ENSMUST00000012873.16	4835	4	17814	8	17752	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTATCCTGGTTTGGT	NA	False	NA	-12	True	NA	NA	NA	67740012	67737565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67737600_67740000
ENSMUSG00000058093.14_4	chr13	-	4792	4	FSM	ENSMUSG00000058093.14	ENSMUST00000012873.16	4835	4	35	8	15	-8	multi-exon	FALSE	canonical	3	23	junction_3	17.2497987105808	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTATCCTGGTTTGGT	NA	False	NA	-12	True	NA	NA	NA	67757791	67737565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67742035_67743334_67743431_67744767_67744895_67757691
ENSMUSG00000058093.14_6	chr13	-	4524	2	ISM	ENSMUSG00000058093.14	ENSMUST00000012873.16	4835	4	14435	10	14373	-10	3prime_fragment	FALSE	canonical	3	48	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTATCCTGGTTTG	NA	False	NA	-14	True	NA	NA	NA	67743391	67737567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67742035_67743334
ENSMUSG00000058099.17_2	chr15	-	1360	1	ISM	ENSMUSG00000058099.17	ENSMUST00000231165.2	7634	6	35205	3769	24982	979	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATGAATAAAAAAAAAAA	6900	False	NA	NA	False	NA	NA	NA	82882302	82880942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_82880900_82882300
ENSMUSG00000058126.8_0	chr14	+	2086	1	FSM	ENSMUSG00000058126.8	ENSMUST00000072359.8	2147	1	14	47	14	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	795	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACGATCAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	113552053	113554139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_113552100_113554100
ENSMUSG00000058135.13_0	chr3	-	1125	8	FSM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	154	10	-13	-4	multi-exon	FALSE	canonical	3	592	junction_3	56.1666616201374	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACTTGCCATGAGTTGT	6737	False	NA	-14	True	AATAAA	-8	NA	107925135	107919580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
ENSMUSG00000058135.13_1	chr3	-	1138	7	ISM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	456	8	289	-2	3prime_fragment	FALSE	canonical	3	592	junction_3	57.9300344285146	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTGCCATGAGTTGTGT	7039	False	NA	-12	True	AATAAA	-10	NA	107924833	107919578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666
ENSMUSG00000058147.2_10	chrX	-	2403	8	NIC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	-5	-1	intron_retention	FALSE	canonical	3	686	junction_4	393.293938993445	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-9	True	AATAAA	-15	NA	72309001	72298146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUSG00000058147.2_8	chrX	-	1590	9	FSM	ENSMUSG00000058147.2	ENSMUST00000080839.2	1584	9	-7	1	-7	-1	multi-exon	FALSE	canonical	3	686	junction_5	383.166718772651	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-9	True	AATAAA	-15	NA	72309003	72298146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUSG00000058147.2_9	chrX	-	3777	7	NIC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	0	-1	intron_retention	FALSE	canonical	3	944	junction_2	356.51012920003	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-9	True	AATAAA	-15	NA	72308996	72298146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUSG00000058153.16_1	chr5	-	726	2	NNC	ENSMUSG00000058153.16	novel	4998	15	NA	NA	52802	289	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTCCTCTAAAAGGT	7724	False	NA	NA	False	ATTAAA	-13	NA	112570191	112569389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_112569905_112569980
ENSMUSG00000058173.13_0	chr9	+	914	3	FSM	ENSMUSG00000058173.13	ENSMUST00000215907.2	994	3	80	0	80	0	multi-exon	FALSE	canonical	2	6	junction_1	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGGTGTTTCTCTTGT	NA	False	NA	8	True	AATAAA	-16	NA	15404807	15456553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_15404926_15436923_15437001_15455834
ENSMUSG00000058183.15_3	chr4	+	2132	17	NIC	ENSMUSG00000058183.15	novel	2935	24	NA	NA	2585	-2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	3.15980616494113	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGAAGACTTTGTTTTG	4164	False	NA	1	True	AGTAAA	-5	NA	154969250	154979976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_154969499_154970607_154970674_154972083_154972219_154972293_154972384_154973963_154974101_154974384_154974479_154975295_154975425_154975937_154976037_154976400_154976485_154976872_154976977_154977280_154977340_154977688_154977809_154978287_154978422_154978531_154978598_154979053_154979150_154979417_154979495_154979582
ENSMUSG00000058183.15_6	chr4	+	2459	21	ISM	ENSMUSG00000058183.15	ENSMUST00000163732.8	2935	24	12630	7	6	0	3prime_fragment	FALSE	canonical	1	1	junction_4	3.09838667696593	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGACTTTGTTTTGTA	1585	False	NA	3	True	AGTAAA	-7	NA	154966671	154979978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_154966787_154967629_154967792_154968080_154968162_154969402_154969499_154969960_154970080_154970607_154970674_154972083_154972219_154972293_154972384_154973963_154974101_154974384_154974479_154975295_154975425_154975937_154976037_154976400_154976485_154976872_154976977_154977280_154977340_154977688_154977809_154978287_154978422_154978531_154978598_154979053_154979150_154979417_154979495_154979582
ENSMUSG00000058186.14_18	chr4	+	3999	5	FSM	ENSMUSG00000058186.14	ENSMUST00000105738.9	4006	5	1	6	1	-6	multi-exon	FALSE	canonical	3	18	junction_2	173.168992605489	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	145397255	145431005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474
ENSMUSG00000058186.14_19	chr4	+	3995	5	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	171.762918000365	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	145397256	145431005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_145397419_145399301_145399395_145422723_145422806_145425813_145425941_145427474
ENSMUSG00000058186.14_22	chr4	+	3758	6	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	-10	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	187.01080182706	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	145397244	145431005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474_145427955_145428206
ENSMUSG00000058186.14_53	chr4	+	3865	4	NNC	ENSMUSG00000058186.14	novel	1938	3	NA	NA	3834	-6	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	187.21289129402	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	145401088	145431005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_145401211_145422720_145422806_145425813_145425941_145427474
ENSMUSG00000058186.14_64	chr4	+	2544	1	ISM	ENSMUSG00000058186.14	ENSMUST00000105738.9	4006	5	31207	6	5731	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	145428461	145431005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_145428500_145431000
ENSMUSG00000058192.17_1	chr9	+	2586	6	FSM	ENSMUSG00000058192.17	ENSMUST00000115557.10	12974	6	160	10228	-40	-13	multi-exon	FALSE	canonical	3	29	junction_1	3.8262252939418	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTAGCTTACAGCAGCTG	2	True	NA	12	True	ATTAAA	-12	NA	20492780	20506477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_20492975_20499130_20499220_20499804_20499932_20502108_20502181_20502634_20502718_20504456
ENSMUSG00000058192.17_2	chr9	+	2601	7	FSM	ENSMUSG00000058192.17	ENSMUST00000140668.8	2661	7	0	60	0	-60	multi-exon	FALSE	canonical	2	6	junction_4	12.0369800568452	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTAGATTCTGTTGTTGG	42	False	NA	-35	True	TATAAA	-15	NA	20492820	20506430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_20492975_20499130_20499220_20499804_20499932_20500752_20500855_20502108_20502181_20502634_20502718_20504456
ENSMUSG00000058192.17_3	chr9	+	2477	5	NIC	ENSMUSG00000058192.17	novel	2661	7	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	3	junction_4	13.8744369255116	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTGAGTTTCATGATATA	42	False	NA	26	True	ATTAAA	-26	NA	20492820	20506491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_20492975_20499130_20499220_20499804_20499932_20502108_20502181_20504456
ENSMUSG00000058192.17_4	chr9	+	3902	6	NIC	ENSMUSG00000058192.17	novel	2661	7	NA	NA	0	-13	intron_retention	FALSE	canonical	3	7	junction_3	10.0876161703348	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTAGCTTACAGCAGCTG	42	False	NA	12	True	ATTAAA	-12	NA	20492820	20506477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_20492975_20499130_20499220_20499804_20499932_20500752_20502181_20502634_20502718_20504456
ENSMUSG00000058192.17_5	chr9	+	1252	1	ISM	ENSMUSG00000058192.17	ENSMUST00000115557.10	12974	6	12609	10224	6043	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTACAGCAGCTGAGTT	NA	False	NA	16	True	ATTAAA	-16	NA	20505229	20506481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_20505200_20506500
ENSMUSG00000058192.17_9	chr9	+	2237	5	ISM	ENSMUSG00000058192.17	ENSMUST00000115557.10	12974	6	200	12276	0	-1338	5prime_fragment	FALSE	canonical	3	29	junction_1	4.06201920231798	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGATTCCTCCCTTTA	42	False	NA	NA	False	AATAAA	-16	NA	20492820	20504429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_20492975_20499130_20499220_20499804_20499932_20502108_20502181_20502634
ENSMUSG00000058216.14_2	chr19	-	910	5	ISM	ENSMUSG00000058216.14	ENSMUST00000076451.7	685	6	192	0	192	0	3prime_fragment	FALSE	canonical	3	57	junction_3	9.36416040016402	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGTGCAGGGCTTGTCC	9416	False	NA	NA	False	NA	NA	NA	4109103	4107477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734
ENSMUSG00000058216.14_3	chr19	-	688	6	NIC	ENSMUSG00000058216.14	novel	685	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	25.7029181222678	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGTGCAGGGCTTGTCC	9056	False	NA	NA	False	NA	NA	NA	4109463	4107477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109423
ENSMUSG00000058216.14_5	chr19	-	466	3	ISM	ENSMUSG00000058216.14	ENSMUST00000076451.7	685	6	1097	-4	1097	3	3prime_fragment	FALSE	canonical	3	74	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCAGGGCTTGTCCTTAA	NA	False	NA	NA	False	NA	NA	NA	4108198	4107473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4107719_4107887_4107996_4108085
ENSMUSG00000058216.14_6	chr19	-	706	7	FSM	ENSMUSG00000058216.14	ENSMUST00000189808.7	708	7	1	1	1	0	multi-exon	FALSE	canonical	2	4	junction_6	28.8236978119664	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGTGCAGGGCTTGTCC	9074	False	NA	NA	False	NA	NA	NA	4109445	4107477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109258_4109295_4109423
ENSMUSG00000058216.14_7	chr19	-	520	4	ISM	ENSMUSG00000058216.14	ENSMUST00000076451.7	685	6	700	0	700	0	3prime_fragment	FALSE	canonical	3	57	junction_3	9.10433352249844	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGTGCAGGGCTTGTCC	9924	False	NA	NA	False	NA	NA	NA	4108595	4107477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528
ENSMUSG00000058230.13_0	chr7	-	5001	6	ISM	ENSMUSG00000058230.13	ENSMUST00000171937.2	6251	8	51910	-1211	51910	1211	3prime_fragment	FALSE	canonical	3	90	junction_2	8	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATAGTGCTGCTGTCAGC	NA	False	NA	-4	True	AATAAA	-17	NA	16296952	16228965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_16231936_16232508_16232615_16245117_16245250_16246332_16246411_16282987_16283133_16295382
ENSMUSG00000058230.13_1	chr7	-	7504	7	FSM	ENSMUSG00000058230.13	ENSMUST00000075845.11	9147	7	322	1321	266	1212	multi-exon	TRUE	canonical	3	71	junction_6	12.7366487830285	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTGCTGCTGTCAGCT	NA	False	NA	-3	True	AATAAA	-18	NA	16348596	16228964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_16231936_16232508_16232615_16245117_16245250_16246332_16246411_16282987_16283133_16295382_16299255_16348396
ENSMUSG00000058230.13_3	chr7	-	2335	1	ISM	ENSMUSG00000058230.13	ENSMUST00000075845.11	9147	7	117618	1322	117562	1211	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATAGTGCTGCTGTCAGC	9107	False	NA	-4	True	AATAAA	-17	NA	16231300	16228965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_16229000_16231300
ENSMUSG00000058239.14_10	chr7	-	209	1	ISM	ENSMUSG00000058239.14	ENSMUST00000058860.14	2419	10	10599	748	9246	578	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGTGTGTCCATG	4523	False	NA	-8	True	AATAAA	-22	NA	30645629	30645420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30645400_30645600
ENSMUSG00000058239.14_11	chr7	-	1300	7	ISM	ENSMUSG00000058239.14	ENSMUST00000171338.8	994	9	854	-584	3	578	3prime_fragment	FALSE	canonical	3	80	junction_3	24.3064920454506	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGTGTGTCCATG	9664	False	NA	-8	True	AATAAA	-22	NA	30655328	30645420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655224
ENSMUSG00000058239.14_13	chr7	-	1685	9	FSM	ENSMUSG00000058239.14	ENSMUST00000171338.8	994	9	-108	-583	-62	577	multi-exon	FALSE	canonical	2	3	junction_8	43.3688756483264	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTGTCTGTGTGTCCAT	8702	False	NA	-9	True	AATAAA	-21	NA	30656290	30645421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655224_30655426_30655573_30655693_30656120
ENSMUSG00000058239.14_18	chr7	-	1557	9	FSM	ENSMUSG00000058239.14	ENSMUST00000108119.10	849	9	-124	-584	-87	578	multi-exon	TRUE	canonical	3	19	junction_6	40.847085269331	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGTGTGTCCATG	8677	False	NA	-8	True	AATAAA	-22	NA	30656315	30645420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655573_30655693_30655806_30655854_30656120
ENSMUSG00000058239.14_5	chr7	-	1808	10	FSM	ENSMUSG00000058239.14	ENSMUST00000058860.14	2419	10	-138	749	-138	577	multi-exon	FALSE	canonical	3	69	junction_9	26.650458036969	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTGTCTGTGTGTCCAT	8626	False	NA	-9	True	AATAAA	-21	NA	30656366	30645421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655224_30655426_30655573_30655693_30655806_30655854_30656120
ENSMUSG00000058239.14_7	chr7	-	2260	9	NIC	ENSMUSG00000058239.14	novel	2419	10	NA	NA	-513	573	intron_retention	FALSE	canonical	3	69	junction_8	25.840556785797	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTTGTCTGTCTGTGTGT	8251	False	NA	-13	True	AATAAA	-17	NA	30656741	30645425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655224_30655426_30655573_30655693_30655806_30655854_30656120
ENSMUSG00000058240.15_21	chr16	-	1462	13	FSM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	360	143	-7	61	multi-exon	FALSE	canonical	1	405	junction_2	358.43629334777	823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCAAACGTCATTTGATT	9188	False	NA	-13	True	AATACA	-20	NA	91525503	91486352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_98	chr16	-	1650	9	ISM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	360	5029	-7	-7	5prime_fragment	FALSE	canonical	3	1431	junction_2	88.070195724774	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTTTATAAATTCTCTT	9188	False	NA	NA	False	AATAAA	-11	NA	91525503	91491238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_99	chr16	-	946	10	FSM	ENSMUSG00000058240.15	ENSMUST00000114023.3	1154	10	86	122	-7	-116	multi-exon	FALSE	canonical	3	81	junction_1	469.417790170329	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTCTAGAGTACATT	9188	False	NA	0	True	AATAAA	-23	NA	91525503	91491347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_91491554_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058248.13_1	chr1	+	3036	1	ISM	ENSMUSG00000058248.13	ENSMUST00000078470.12	7242	11	315511	839	71545	-839	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGGTGCCCTCCACCTGGA	NA	False	NA	NA	False	AATAAA	-17	NA	192188592	192191628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_192188600_192191600
ENSMUSG00000058252.7_1	chrX	-	1768	10	FSM	ENSMUSG00000058252.7	ENSMUST00000078605.7	1776	10	0	8	0	-8	multi-exon	FALSE	canonical	1	3	junction_3	2.8588178511708	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAAACATCAGTGTCTT	6971	False	NA	NA	False	AATAAA	-12	NA	134594539	134555454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_134555875_134558185_134558350_134559471_134559654_134559749_134559968_134561192_134561330_134565131_134565353_134566154_134566276_134570064_134570177_134593910_134594046_134594481
ENSMUSG00000058254.13_0	chrX	+	1744	8	FSM	ENSMUSG00000058254.13	ENSMUST00000076354.13	1733	8	-21	10	-21	-10	multi-exon	FALSE	canonical	3	58	junction_5	9.20736173961258	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGGCTATGTTGTGGT	NA	False	NA	NA	False	AATAAA	-11	NA	10351375	10462834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_10351478_10445553_10445743_10448403_10448479_10450280_10450377_10451735_10451892_10456374_10456459_10461517_10461594_10461868
ENSMUSG00000058258.15_0	chr13	+	2519	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	425	83	-17	-83	multi-exon	TRUE	canonical	3	487	junction_1	56.3576747213722	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTGTCTGGCTTGTTAA	NA	False	NA	-8	True	AATAAA	-8	NA	8935961	8942404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
ENSMUSG00000058258.15_13	chr13	+	2449	4	ISM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	1230	83	-338	-83	3prime_fragment	FALSE	canonical	3	573	junction_1	25.5907969568923	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTGTCTGGCTTGTTAA	NA	False	NA	-8	True	AATAAA	-8	NA	8936766	8942404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_8936941_8937520_8937614_8937958_8938090_8940353
ENSMUSG00000058258.15_16	chr13	+	1760	1	ISM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	5111	80	3543	-80	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTGGCTTGTTAATAT	2660	False	NA	-5	True	AATAAA	-11	NA	8940647	8942407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_8940600_8942400
ENSMUSG00000058267.14_0	chr1	+	603	3	FSM	ENSMUSG00000058267.14	ENSMUST00000135680.8	2999	3	43	2353	43	-3	multi-exon	FALSE	canonical	3	2655	junction_1	51	611	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATGGTCTTTCCTTCA	NA	False	NA	14	True	AATAAA	-14	NA	160022827	160027387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_160022882_160024515_160024675_160026997
ENSMUSG00000058290.5_3	chr15	+	6621	31	FSM	ENSMUSG00000058290.5	ENSMUST00000064924.6	6658	31	34	3	2	-3	multi-exon	FALSE	canonical	3	138	junction_1	58.1614706370692	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTTGTGAGAGTTGAAG	393	False	NA	14	True	AATAAA	-14	NA	102204734	102232789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102204851_102205194_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
ENSMUSG00000058290.5_4	chr15	+	6676	31	FSM	ENSMUSG00000058290.5	ENSMUST00000229050.2	6635	31	2	-43	2	-2	multi-exon	FALSE	canonical	3	92	junction_1	63.2712063703195	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTGTGAGAGTTGAAGC	393	False	NA	15	True	AATAAA	-15	NA	102204734	102232790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102204851_102205140_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
ENSMUSG00000058290.5_41	chr15	+	5797	29	ISM	ENSMUSG00000058290.5	ENSMUST00000064924.6	6658	31	2537	2	2498	-2	3prime_fragment	FALSE	canonical	3	251	junction_4	48.2947344702403	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTGTGAGAGTTGAAGC	2896	False	NA	15	True	AATAAA	-15	NA	102207237	102232790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
ENSMUSG00000058290.5_47	chr15	+	4742	24	ISM	ENSMUSG00000058290.5	ENSMUST00000064924.6	6658	31	8729	3	8690	-3	3prime_fragment	FALSE	canonical	3	267	junction_1	42.1946161645099	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTTGTGAGAGTTGAAG	9088	False	NA	14	True	AATAAA	-14	NA	102213429	102232789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
ENSMUSG00000058290.5_5	chr15	+	6967	30	NIC	ENSMUSG00000058290.5	novel	6635	31	NA	NA	1	-2	intron_retention	TRUE	canonical	3	251	junction_5	48.3978507988739	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTGTGAGAGTTGAAGC	392	False	NA	15	True	AATAAA	-15	NA	102204733	102232790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
ENSMUSG00000058290.5_6	chr15	+	6652	31	NIC	ENSMUSG00000058290.5	novel	6658	31	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	69.6461213724226	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGTGAGAGTTGAAGCT	393	False	NA	16	True	AATAAA	-16	NA	102204734	102232791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_102204851_102205165_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
ENSMUSG00000058290.5_67	chr15	+	2784	14	ISM	ENSMUSG00000058290.5	ENSMUST00000064924.6	6658	31	19464	1	-755	-1	3prime_fragment	FALSE	canonical	3	305	junction_5	32.1634141082782	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGTGAGAGTTGAAGCT	NA	False	NA	16	True	AATAAA	-16	NA	102224164	102232791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
ENSMUSG00000058291.15_0	chr5	-	2146	5	FSM	ENSMUSG00000058291.15	ENSMUST00000085852.11	3318	5	40	1132	20	0	multi-exon	FALSE	canonical	3	23	junction_3	27.3530162870569	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGATCTTTGTTTGTTTA	1774	False	NA	-5	True	AATAAA	-14	NA	138617980	138604377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138615316_138615430_138617870
ENSMUSG00000058291.15_1	chr5	-	2246	6	FSM	ENSMUSG00000058291.15	ENSMUST00000110905.9	4749	6	43	2460	20	4	multi-exon	FALSE	canonical	3	54	junction_4	14.2632394637403	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTTGTTTGTTTATCAA	1774	False	NA	-1	True	AATAAA	-18	NA	138617980	138604373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614828_138615316_138615430_138617870
ENSMUSG00000058291.15_2	chr5	-	3589	5	ISM	ENSMUSG00000058291.15	ENSMUST00000110905.9	4749	6	2627	974	2519	358	3prime_fragment	FALSE	canonical	3	54	junction_4	11.146748404804	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATATTATTTTAAGTTG	4358	False	NA	NA	False	AATAAA	-7	NA	138615396	138602887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614828_138615316
ENSMUSG00000058291.15_3	chr5	-	1405	1	ISM	ENSMUSG00000058291.15	ENSMUST00000110905.9	4749	6	13731	974	1027	358	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATATTATTTTAAGTTG	NA	False	NA	NA	False	AATAAA	-7	NA	138604292	138602887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_138602900_138604300
ENSMUSG00000058291.15_6	chr5	-	2253	6	FSM	ENSMUSG00000058291.15	ENSMUST00000063262.11	2254	6	9	-8	7	4	multi-exon	FALSE	canonical	3	19	junction_4	25.9584283037321	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTTGTTTGTTTATCAA	1761	False	NA	-1	True	AATAAA	-18	NA	138617993	138604373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614822_138615316_138615430_138617870
ENSMUSG00000058297.17_0	chr10	+	3321	10	NIC	ENSMUSG00000058297.17	novel	5238	11	NA	NA	-70	-439	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	3.23178657161089	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCACGACACAGTTCTGA	9410	False	NA	NA	False	CATAAA	-10	NA	59942219	59969291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_59942479_59957299_59957346_59957505_59957621_59959631_59959747_59961531_59961647_59961975_59962093_59962655_59962875_59965502_59965566_59966905_59967044_59967157
ENSMUSG00000058297.17_1	chr10	+	4408	5	ISM	ENSMUSG00000058297.17	ENSMUST00000121820.9	5238	11	19919	8	19670	-8	3prime_fragment	FALSE	canonical	2	6	junction_4	1.92028643696715	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACCTGCTGAGAAA	NA	False	NA	-4	True	AATAAA	-9	NA	59961959	59971012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_59962093_59962655_59962875_59965502_59965566_59966905_59967044_59967157
ENSMUSG00000058297.17_5	chr10	+	3588	1	ISM	ENSMUSG00000058297.17	ENSMUST00000121820.9	5238	11	25391	1	25142	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGCTGAGAAACCTTTGC	NA	False	NA	3	True	AATAAA	-16	NA	59967431	59971019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_59967400_59971000
ENSMUSG00000058298.11_0	chr10	-	1495	1	ISM	ENSMUSG00000058298.11	ENSMUST00000237608.2	4882	14	92627	3	55349	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCTGTCTTTCTGTGTG	NA	False	NA	17	True	AATAAA	-43	NA	53413908	53412413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_53412400_53413900
ENSMUSG00000058298.11_18	chr10	-	1584	8	NIC	ENSMUSG00000058298.11	novel	4132	8	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	12.5795428358579	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATCCTTTCTAAAACTG	NA	False	NA	NA	False	ATTAAA	-20	NA	53506061	53484933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_53485111_53487447_53487568_53488922_53489049_53491947_53492149_53496229_53496312_53498851_53499169_53501811_53502131_53505819
ENSMUSG00000058298.11_19	chr10	-	3314	7	ISM	ENSMUSG00000058298.11	ENSMUST00000219838.3	4132	8	475	606	-5	-606	3prime_fragment	FALSE	canonical	3	32	junction_3	5.08811250749125	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACTTTTGTGACAATGG	NA	False	NA	NA	False	AATAAA	-20	NA	53506060	53485539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_53487568_53488922_53489049_53491947_53492149_53496229_53496312_53498851_53499169_53501811_53502131_53505819
ENSMUSG00000058298.11_2	chr10	-	4663	13	ISM	ENSMUSG00000058298.11	ENSMUST00000075540.8	4868	14	473	-5	-7	5	3prime_fragment	FALSE	canonical	3	17	junction_3	8.05536398239638	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTAAACTCTGTCTTTC	NA	False	NA	11	True	AATAAA	-37	NA	53506062	53412419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_53414864_53417033_53417180_53417632_53417716_53423498_53423703_53424592_53424796_53439378_53439554_53487447_53487568_53488922_53489049_53491947_53492149_53496229_53496312_53498851_53499169_53501811_53502131_53505819
ENSMUSG00000058298.11_9	chr10	-	4656	13	NNC	ENSMUSG00000058298.11	novel	4882	14	NA	NA	-10	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	11.2851303345006	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGCAGAGATGACTAAACT	NA	False	NA	2	True	AATAAA	-28	NA	53506065	53412428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_53414864_53417033_53417180_53417632_53417716_53423498_53423703_53424592_53424796_53439378_53439554_53487447_53487568_53488923_53489049_53491947_53492149_53496229_53496312_53498851_53499169_53501811_53502131_53505819
ENSMUSG00000058301.9_0	chr8	-	4591	24	FSM	ENSMUSG00000058301.9	ENSMUST00000215817.2	4518	24	-81	8	-14	-8	multi-exon	FALSE	canonical	0	0	junction_1	119.404999372875	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAACAGTCCCTGCTTTT	NA	False	NA	-37	True	AATAAA	-6	NA	70805942	70784182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70785130_70785269_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792664_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427
ENSMUSG00000058301.9_1	chr8	-	3888	23	NIC	ENSMUSG00000058301.9	novel	4518	24	NA	NA	-17	-854	intron_retention	FALSE	canonical	3	421	junction_16	57.309367788902	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGCACCACTGTGTGAG	NA	False	NA	NA	False	AATAAA	-40	NA	70805945	70785028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792664_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427
ENSMUSG00000058301.9_2	chr8	-	4622	24	FSM	ENSMUSG00000058301.9	ENSMUST00000075666.8	4618	24	-12	8	-12	-8	multi-exon	TRUE	canonical	0	0	junction_1	146.934304983882	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAACAGTCCCTGCTTTT	NA	False	NA	-37	True	AATAAA	-6	NA	70805940	70784182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70785130_70785269_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792631_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427
ENSMUSG00000058317.13_11	chr14	+	1438	6	NNC	ENSMUSG00000058317.13	novel	1523	6	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	78.1854206358193	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGCCCTTCTGTACCAG	NA	False	NA	2	True	AATAAA	-14	NA	3576001	3896114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_3576112_3581246_3581431_3598151_3598203_3839262_3839398_3882697_3882846_3895304
ENSMUSG00000058317.13_14	chr14	+	1517	6	NNC	ENSMUSG00000058317.13	novel	757	6	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	91.0178004568337	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATGCCCTTCTGTACCA	NA	False	NA	1	True	AATAAA	-13	NA	3576278	3896113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_3576469_3581246_3581431_3598151_3598203_3839262_3839398_3882697_3882846_3895304
ENSMUSG00000058317.13_19	chr14	+	1397	5	NNC	ENSMUSG00000058317.13	novel	1523	6	NA	NA	-12	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	86.7103655856669	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATGCCCTTCTGTACCA	NA	False	NA	1	True	AATAAA	-13	NA	3575990	3896113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_3576112_3581246_3581431_3839262_3839398_3882697_3882846_3895304
ENSMUSG00000058318.16_11	chr2	+	2444	10	ISM	ENSMUSG00000058318.16	ENSMUST00000159961.8	1735	14	102220	-1280	-28	-119	3prime_fragment	FALSE	canonical	2	16	junction_2	3.23178657161089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGAGGTCTTCCTAGTGTT	NA	False	NA	NA	False	AATAAA	-5	NA	92161043	92192055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_92161154_92174888_92174988_92178340_92178393_92179222_92179303_92179732_92179794_92182045_92182210_92187208_92187365_92189038_92189115_92189450_92189555_92190513
ENSMUSG00000058318.16_12	chr2	+	2155	5	ISM	ENSMUSG00000058318.16	ENSMUST00000159961.8	1735	14	123220	-1391	2788	-8	3prime_fragment	FALSE	canonical	2	16	junction_4	2.27760839478607	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACTGGAGAAAACGCTGT	NA	False	NA	-6	True	ATTAAA	-9	NA	92182043	92192166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_92182210_92187208_92187365_92189038_92189115_92189450_92189555_92190513
ENSMUSG00000058318.16_13	chr2	+	3315	4	ISM	ENSMUSG00000058318.16	ENSMUST00000159961.8	1735	14	127059	-1391	6627	-8	3prime_fragment	FALSE	canonical	3	16	junction_3	2.49443825784929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACTGGAGAAAACGCTGT	402	False	NA	-6	True	ATTAAA	-9	NA	92185882	92192166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_92187365_92189038_92189115_92189450_92189555_92190513
ENSMUSG00000058318.16_14	chr2	+	3886	1	ISM	ENSMUSG00000058318.16	ENSMUST00000044036.15	6187	16	267662	2	11868	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCGGCCTCTTGGTGTTGC	1328	False	NA	1	True	AATAAA	-14	NA	92191123	92195009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_92191100_92195000
ENSMUSG00000058318.16_15	chr2	+	4263	19	NIC	ENSMUSG00000058318.16	novel	3900	19	NA	NA	-292	-7	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	5.97964654804163	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTGGAGAAAACGCTGTG	NA	False	NA	-5	True	ATTAAA	-10	NA	92014158	92192167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_92014698_92044393_92044435_92045793_92045921_92051816_92051961_92058793_92058827_92061003_92061070_92150573_92150805_92157257_92157510_92158656_92158747_92160859_92161154_92174888_92174988_92178340_92178393_92179222_92179303_92179732_92179794_92182045_92182210_92187208_92187365_92189038_92189115_92189450_92189555_92190513
ENSMUSG00000058318.16_23	chr2	+	3332	16	FSM	ENSMUSG00000058318.16	ENSMUST00000090586.12	6310	16	20	2958	12	-121	multi-exon	FALSE	canonical	2	5	junction_4	5.0622788017519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGAGGTCTTCCTAGTG	NA	False	NA	NA	False	AATAAA	-3	NA	92051926	92192053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_92051961_92058793_92058827_92061003_92061070_92150573_92150805_92157257_92157510_92158656_92158747_92160859_92161154_92174888_92174988_92178340_92178393_92179222_92179303_92179732_92179794_92182045_92182210_92187208_92187365_92189038_92189115_92189450_92189555_92190513
ENSMUSG00000058318.16_24	chr2	+	3019	11	ISM	ENSMUSG00000058318.16	ENSMUST00000159961.8	1735	14	99645	-1393	-2603	-6	3prime_fragment	FALSE	canonical	2	16	junction_3	3.33016516106934	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGGAGAAAACGCTGTGT	NA	False	NA	-4	True	ATTAAA	-11	NA	92158468	92192168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_92158747_92160859_92161154_92174888_92174988_92178340_92178393_92179222_92179303_92179732_92179794_92182045_92182210_92187208_92187365_92189038_92189115_92189450_92189555_92190513
ENSMUSG00000058318.16_26	chr2	+	1620	2	ISM	ENSMUSG00000058318.16	ENSMUST00000159961.8	1735	14	130641	-1268	10209	-131	3prime_fragment	FALSE	canonical	3	16	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAGATATTGAGGT	3984	False	NA	NA	False	ATTAAA	-5	NA	92189464	92192043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_92189555_92190513
ENSMUSG00000058318.16_4	chr2	+	4135	18	NIC	ENSMUSG00000058318.16	novel	3900	19	NA	NA	-287	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	6.26629364027566	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACGCTGTGTAGTGAC	NA	False	NA	2	True	ATTAAA	-17	NA	92014163	92192174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_92014698_92044393_92044435_92051816_92051961_92058793_92058827_92061003_92061070_92150573_92150805_92157257_92157510_92158659_92158747_92160859_92161154_92174888_92174988_92178340_92178393_92179222_92179303_92179732_92179794_92182045_92182210_92187208_92187365_92189038_92189115_92189450_92189555_92190513
ENSMUSG00000058325.7_3	chr7	+	6799	52	FSM	ENSMUSG00000058325.7	ENSMUST00000084488.5	6807	52	8	0	4	0	multi-exon	FALSE	canonical	3	98	junction_42	17.5348283073368	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGGACTCCTGGTGGCT	NA	False	NA	2	True	AATAAA	-9	NA	134272423	134775368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_134272574_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358686_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475_134384577_134390879_134391015_134406270_134406380_134449870_134449942_134453225_134453333_134475786_134475915_134477948_134478045_134592250_134592353_134600952_134601048_134678863_134678943_134683546_134683648_134693102_134693162_134700461_134700611_134710163_134710250_134710434_134710592_134715576_134715618_134717018_134717110_134720636_134720757_134734717_134734808_134735587_134735693_134739543_134739686_134739806_134739886_134742035_134742121_134745484_134745572_134747142_134747320_134748168_134748253_134753937_134754076_134760189_134760336_134765006_134765206_134768828_134768983_134770091_134770244_134774175
ENSMUSG00000058325.7_6	chr7	+	2567	21	FSM	ENSMUSG00000058325.7	ENSMUST00000211593.2	2589	21	16	6	12	-3	multi-exon	FALSE	canonical	3	101	junction_11	23.1652217774836	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGGATGTGTTTCTG	NA	False	NA	1	True	NA	NA	NA	134272431	134384909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_134272574_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358686_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475
ENSMUSG00000058328.14_0	chrX	-	980	7	ISM	ENSMUSG00000058328.14	ENSMUST00000114521.8	1474	8	2430	471	91	303	3prime_fragment	FALSE	canonical	3	293	junction_4	79.3928348292352	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72158878	72151711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740
ENSMUSG00000058328.14_10	chrX	-	1014	8	FSM	ENSMUSG00000058328.14	ENSMUST00000114521.8	1474	8	-14	474	-14	300	multi-exon	FALSE	canonical	3	112	junction_7	121.461844180947	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTCTGTGCATGCTTTC	NA	False	NA	NA	False	AATAAA	-11	NA	72161322	72151714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
ENSMUSG00000058328.14_15	chrX	-	1078	8	FSM	ENSMUSG00000058328.14	ENSMUST00000114520.2	867	8	91	-302	91	302	multi-exon	TRUE	canonical	3	269	junction_2	81.1275136398729	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTGCATGCTTTCAT	NA	False	NA	NA	False	AATAAA	-13	NA	72158878	72151712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740
ENSMUSG00000058328.14_17	chrX	-	1036	8	NNC	ENSMUSG00000058328.14	novel	1474	8	NA	NA	20	302	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_7	139.651022779159	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTGCATGCTTTCAT	NA	False	NA	NA	False	AATAAA	-13	NA	72161288	72151712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161230
ENSMUSG00000058328.14_2	chrX	-	1148	9	FSM	ENSMUSG00000058328.14	ENSMUST00000078574.12	1650	9	30	472	30	302	multi-exon	FALSE	canonical	3	269	junction_2	77.2438306598009	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTGCATGCTTTCAT	NA	False	NA	NA	False	AATAAA	-13	NA	72161278	72151712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
ENSMUSG00000058328.14_3	chrX	-	1049	8	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	30	302	combination_of_known_junctions	FALSE	canonical	3	293	junction_4	76.0110088696878	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTGCATGCTTTCAT	NA	False	NA	NA	False	AATAAA	-13	NA	72161278	72151712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
ENSMUSG00000058328.14_4	chrX	-	1115	9	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	-14	302	combination_of_known_junctions	FALSE	canonical	3	112	junction_8	115.823141038395	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTGCATGCTTTCAT	NA	False	NA	NA	False	AATAAA	-13	NA	72161322	72151712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
ENSMUSG00000058331.16_3	chr13	-	2221	4	FSM	ENSMUSG00000058331.16	ENSMUST00000144183.3	2312	4	85	6	3	-6	multi-exon	FALSE	canonical	3	13	junction_3	2.44948974278318	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTGTCAGTATTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	67903262	67895924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67897842_67899728_67899825_67900506_67900634_67903181
ENSMUSG00000058351.12_0	chr14	-	381	2	FSM	ENSMUSG00000058351.12	ENSMUST00000049732.11	311	2	-71	1	4	-1	multi-exon	FALSE	canonical	3	152	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGATTTCAGCCATTT	NA	False	NA	-12	True	AATAAA	-17	NA	30850866	30846462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_30846567_30850589
ENSMUSG00000058351.12_1	chr14	-	448	2	FSM	ENSMUSG00000058351.12	ENSMUST00000090205.5	426	2	-4	-18	-4	18	multi-exon	FALSE	canonical	3	53	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCTTGTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	30850864	30846617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_30846791_30850589
ENSMUSG00000058355.9_0	chr8	-	3530	18	FSM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	80	183	10	-183	multi-exon	FALSE	canonical	3	1167	junction_10	93.0334984503433	2446	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	-10	True	AATAAA	-18	NA	80438289	80410273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
ENSMUSG00000058388.15_0	chr3	+	3212	19	FSM	ENSMUSG00000058388.15	ENSMUST00000063717.14	3327	19	111	4	1	-4	multi-exon	FALSE	canonical	3	55	junction_6	13.8399136513399	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAATTTCAGTTTCTAGG	NA	False	NA	2	True	AATAAA	-12	NA	103875684	103914800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103876104_103876370_103876447_103877069_103877127_103889201_103889272_103890261_103890421_103893068_103893226_103894742_103894878_103895930_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
ENSMUSG00000058388.15_1	chr3	+	3163	18	NIC	ENSMUSG00000058388.15	novel	3327	19	NA	NA	-5	-4	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	19.101984534304	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAATTTCAGTTTCTAGG	NA	False	NA	2	True	AATAAA	-12	NA	103875676	103914800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_103876104_103876370_103876447_103889201_103889272_103890261_103890421_103893068_103893226_103894742_103894878_103895930_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
ENSMUSG00000058388.15_10	chr3	+	3122	18	NIC	ENSMUSG00000058388.15	novel	3327	19	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	1	4	junction_9	23.3718252289562	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTCAGTTTCTAGGCTT	NA	False	NA	5	True	AATAAA	-15	NA	103875690	103914803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_103876104_103876370_103876447_103877069_103877127_103889201_103889272_103890261_103890421_103893068_103893226_103894742_103894878_103895930_103896091_103898353_103898528_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
ENSMUSG00000058388.15_3	chr3	+	3087	18	FSM	ENSMUSG00000058388.15	ENSMUST00000090685.11	3006	18	-87	6	-7	-4	multi-exon	FALSE	canonical	2	12	junction_6	21.1329618398503	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAATTTCAGTTTCTAGG	NA	False	NA	2	True	AATAAA	-12	NA	103875674	103914800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103876104_103876370_103876447_103877069_103877127_103889201_103889272_103890261_103890421_103893068_103893226_103895930_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
ENSMUSG00000058388.15_40	chr3	+	3068	18	FSM	ENSMUSG00000058388.15	ENSMUST00000055425.15	3060	18	-14	6	-12	-4	multi-exon	FALSE	canonical	2	7	junction_4	22.8624592186075	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAATTTCAGTTTCTAGG	NA	False	NA	2	True	AATAAA	-12	NA	103875669	103914800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103876104_103876370_103876447_103877069_103877127_103889201_103889272_103893068_103893226_103894742_103894878_103895930_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
ENSMUSG00000058392.14_1	chr17	+	4545	16	FSM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	320	9	-4	0	multi-exon	TRUE	canonical	3	488	junction_12	76.5992747282172	1148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCGGATTGGTCTTTGA	NA	False	NA	13	True	ATTAAA	-15	NA	32255393	32281830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
ENSMUSG00000058392.14_2	chr17	+	4485	15	NIC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_2	174.748332157525	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCGGATTGGTCTTTGA	NA	False	NA	13	True	ATTAAA	-15	NA	32255395	32281830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_32255579_32264902_32264986_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
ENSMUSG00000058392.14_71	chr17	+	3185	4	ISM	ENSMUSG00000058392.14	ENSMUST00000147076.8	4487	13	8501	0	867	0	3prime_fragment	FALSE	canonical	3	619	junction_1	41.7372735094184	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCGGATTGGTCTTTGA	NA	False	NA	13	True	ATTAAA	-15	NA	32275759	32281830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_32276231_32277497_32277639_32278247_32278312_32279321
ENSMUSG00000058392.14_77	chr17	+	1652	1	ISM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	25109	5	2041	4	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGATTGGTCTTTGATGTT	NA	False	NA	17	True	ATTAAA	-19	NA	32280182	32281834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_32280200_32281800
ENSMUSG00000058402.15_0	chr7	+	2424	3	FSM	ENSMUSG00000058402.15	ENSMUST00000057652.7	2744	3	-37	357	0	-35	multi-exon	FALSE	canonical	2	5	junction_1	17.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCACTTGGATCAGCTC	NA	False	NA	NA	False	AATATA	-38	NA	29559428	29575895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29559519_29572316_29572359_29573603
ENSMUSG00000058402.15_2	chr7	+	2326	4	FSM	ENSMUSG00000058402.15	ENSMUST00000074876.13	2537	4	10	201	10	-201	multi-exon	FALSE	canonical	3	31	junction_2	4.02768199119819	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTGCTGTGATATAGAAGG	NA	False	NA	NA	False	ATTAAA	-16	NA	29559413	29575729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29559519_29560440_29560494_29572316_29572359_29573603
ENSMUSG00000058402.15_3	chr7	+	2932	4	NNC	ENSMUSG00000058402.15	novel	2537	4	NA	NA	12	83	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.1334630345285	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCGGTGTTCGACCCAGT	NA	False	NA	NA	False	AATAAA	-25	NA	29559415	29576335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_29559519_29560438_29560494_29572316_29572359_29573603
ENSMUSG00000058402.15_7	chr7	+	2774	2	FSM	ENSMUSG00000058402.15	ENSMUST00000130272.2	768	2	366	-2372	366	81	multi-exon	FALSE	canonical	3	40	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATCGGTGTTCGACCCA	NA	False	NA	NA	False	AATAAA	-23	NA	29572314	29576333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29572359_29573603
ENSMUSG00000058402.15_8	chr7	+	2001	1	Genic_Genomic	ENSMUSG00000058402.15	novel	NA	NA	NA	NA	2770	2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGAGTGTTTTATCTG	NA	False	NA	NA	False	AATAAA	-16	NA	29574718	29576719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_+_29574700_29576700
ENSMUSG00000058407.13_0	chr1	-	1060	5	FSM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	111	2210	20	-3	multi-exon	FALSE	canonical	3	675	junction_1	112.632976965008	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATTCACATGTCTGTT	NA	False	NA	-8	True	NA	NA	NA	38036285	38026479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036189
ENSMUSG00000058407.13_1	chr1	-	1006	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195247.6	1699	5	688	5	19	-3	multi-exon	FALSE	canonical	3	195	junction_4	302.235318088406	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATTCACATGTCTGTT	NA	False	NA	-8	True	NA	NA	NA	38036286	38026479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036244
ENSMUSG00000058407.13_11	chr1	-	2561	4	FSM	ENSMUSG00000058407.13	ENSMUST00000194747.2	2605	4	20	24	20	-24	multi-exon	FALSE	canonical	3	675	junction_1	99.432836069826	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACGTGATTCTTCTATCTT	NA	False	NA	20	True	NA	NA	NA	38036285	38026500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_38026861_38029283_38029539_38033072_38034923_38036189
ENSMUSG00000058407.13_17	chr1	-	1917	4	ISM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	111	3776	20	1293	5prime_fragment	FALSE	canonical	3	765	junction_3	81.3183046224321	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAACTTAATAATATTAAC	NA	False	NA	NA	False	AATAAA	-2	NA	38036285	38028045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_38029539_38033072_38033192_38034713_38034923_38036189
ENSMUSG00000058407.13_18	chr1	-	2488	4	FSM	ENSMUSG00000058407.13	ENSMUST00000193832.6	3472	4	38	946	19	-697	multi-exon	FALSE	canonical	3	195	junction_3	348.930747665875	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTTATTGATTAATGT	NA	False	NA	NA	False	ATTAAA	-20	NA	38036286	38027420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_38029539_38033072_38033192_38034713_38034923_38036244
ENSMUSG00000058407.13_3	chr1	-	2527	4	NIC	ENSMUSG00000058407.13	novel	1699	5	NA	NA	20	-3	intron_retention	FALSE	canonical	3	195	junction_3	299.689098159335	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATTCACATGTCTGTT	NA	False	NA	-8	True	NA	NA	NA	38036285	38026479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_38026861_38029283_38029539_38033072_38034923_38036244
ENSMUSG00000058420.9_0	chr7	-	2944	8	NIC	ENSMUSG00000058420.9	novel	2957	8	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	2.16653584115759	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATTCATTGGAGTTATC	NA	False	NA	-9	True	AATAAA	-15	NA	118047436	117979944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_117981276_118007247_118007404_118009146_118009268_118033055_118033676_118036045_118036195_118041570_118041720_118042341_118042360_118047036
ENSMUSG00000058435.7_0	chr17	-	178	1	Genic_Genomic	ENSMUSG00000058435.7	novel	NA	NA	NA	NA	9217	19	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAATTGTTTCTCCCAGT	NA	False	NA	NA	False	NA	NA	NA	34685694	34685516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_34685500_34685700
ENSMUSG00000058440.15_10	chr6	+	1877	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115206.8	1879	12	-4	6	-2	-1	multi-exon	FALSE	canonical	3	122	junction_11	119.561388499108	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCATATGTATGGTTTGGG	11	True	NA	1	True	AATAAA	-17	NA	30048025	30144853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ENSMUSG00000058440.15_11	chr6	+	1910	13	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	178.740889433715	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATATGTATGGTTTGGGC	12	True	NA	2	True	AATAAA	-18	NA	30048026	30144854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ENSMUSG00000058440.15_12	chr6	+	3228	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115211.8	3295	12	15	52	-12	-52	multi-exon	FALSE	canonical	3	109	junction_11	122.448774919714	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAGTTTCCAATTCTTA	1	True	NA	17	True	ATTAAA	-29	NA	30048015	30153127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
ENSMUSG00000058440.15_14	chr6	+	2280	13	NIC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	-1	-44	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	167.068411636272	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	12	True	NA	NA	False	AATAAA	-15	NA	30048026	30140859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ENSMUSG00000058440.15_16	chr6	+	3259	13	NIC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	9	-60	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	180.170347634306	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTTGAGAAAAGTTTCC	-5	True	NA	9	True	ATTAAA	-21	NA	30048009	30153119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
ENSMUSG00000058440.15_2	chr6	+	3226	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115212.8	3584	12	28	330	-13	-52	multi-exon	FALSE	canonical	3	109	junction_11	130.142642658033	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAGTTTCCAATTCTTA	0	True	NA	17	True	ATTAAA	-29	NA	30048014	30153127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
ENSMUSG00000058440.15_20	chr6	+	3265	13	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	-13	-52	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	176.881080578638	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAGTTTCCAATTCTTA	0	True	NA	17	True	ATTAAA	-29	NA	30048014	30153127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
ENSMUSG00000058440.15_3	chr6	+	1871	12	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_11	127.487870108467	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATATGTATGGTTTGGGC	15	True	NA	2	True	AATAAA	-18	NA	30048029	30144854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ENSMUSG00000058440.15_5	chr6	+	2247	12	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	-1	-44	combination_of_known_junctions	FALSE	canonical	3	271	junction_11	90.9985923058862	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	12	True	NA	NA	False	AATAAA	-15	NA	30048026	30140859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ENSMUSG00000058440.15_6	chr6	+	2256	12	NIC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	-13	-44	combination_of_known_junctions	FALSE	canonical	3	218	junction_2	102.024061333144	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	0	True	NA	NA	False	AATAAA	-15	NA	30048014	30140859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ENSMUSG00000058440.15_7	chr6	+	2294	13	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	-12	-44	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	163.040383545509	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1	True	NA	NA	False	AATAAA	-15	NA	30048015	30140859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ENSMUSG00000058440.15_9	chr6	+	1921	13	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	175.389309030574	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATATGTATGGTTTGGGC	4	True	NA	2	True	AATAAA	-18	NA	30048018	30144854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ENSMUSG00000058443.6_0	chr9	-	748	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-13	33	-13	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	2101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	50256281	50255533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50255500_50256300
ENSMUSG00000058444.9_0	chr9	-	2226	22	FSM	ENSMUSG00000058444.9	ENSMUST00000034920.11	2310	22	82	2	57	-2	multi-exon	FALSE	canonical	3	66	junction_19	9.60607328677695	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGCGTTTGTCTCAGCAA	NA	False	NA	-3	True	AATAAA	-16	NA	63285102	63071051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63265274_63265343_63279018_63279068_63284404
ENSMUSG00000058444.9_16	chr9	-	1962	19	ISM	ENSMUSG00000058444.9	ENSMUST00000034920.11	2310	22	206	52836	181	-333	5prime_fragment	FALSE	canonical	3	66	junction_16	8.30309328050043	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAATCTGCCTTTCTGG	NA	False	NA	NA	False	NA	NA	NA	63284978	63123885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63265274_63265343_63279018_63279068_63284404
ENSMUSG00000058444.9_2	chr9	-	2026	21	NIC	ENSMUSG00000058444.9	novel	2310	22	NA	NA	190	-1	combination_of_known_splicesites	FALSE	canonical	3	8	junction_19	18.5973116336744	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCGTTTGTCTCAGCAAG	NA	False	NA	-2	True	AATAAA	-17	NA	63284969	63071050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63279018_63279068_63284404
ENSMUSG00000058446.15_1	chr6	+	2368	5	FSM	ENSMUSG00000058446.15	ENSMUST00000079869.13	5886	5	-255	3773	-255	-3773	multi-exon	FALSE	canonical	3	557	junction_1	47.955057084733	1000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATACATCTAATGGTTA	NA	False	NA	7	True	AATAAA	-9	NA	54793645	54866712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_54794458_54840884_54840981_54855333_54855440_54861749_54861832_54865440
ENSMUSG00000058446.15_18	chr6	+	2640	1	ISM	ENSMUSG00000058446.15	ENSMUST00000079869.13	5886	5	72995	950	72463	-950	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATGTTAATATTTAGTT	435	False	NA	2	True	AATAAA	-15	NA	54866895	54869535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_54866900_54869500
ENSMUSG00000058447.9_1	chr7	-	2279	8	NIC	ENSMUSG00000058447.9	novel	2374	9	NA	NA	-25	-9	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	44.1093261460796	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATATAATGTGTTCCACT	9865	False	NA	NA	False	ATTAAA	-9	NA	29789860	29755467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29780515_29780643_29786524_29786585_29789712
ENSMUSG00000058447.9_2	chr7	-	4820	7	NIC	ENSMUSG00000058447.9	novel	2374	9	NA	NA	-87	2634	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	48.1756047070391	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCATGTGTTGCTGTGTT	9953	False	NA	NA	False	NA	NA	NA	29789922	29752824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29780515_29780643_29786524_29786585_29789712
ENSMUSG00000058447.9_3	chr7	-	2479	9	FSM	ENSMUSG00000058447.9	ENSMUST00000182746.2	2374	9	-119	14	-119	-14	multi-exon	FALSE	canonical	3	5	junction_6	43.1955943934101	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATACTAATATAATGTGTT	9921	False	NA	NA	False	ATTAAA	-4	NA	29789954	29755472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29780515_29780643_29786524_29786585_29789712
ENSMUSG00000058454.16_1	chr7	+	2355	8	ISM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	594	6	-14	-5	3prime_fragment	TRUE	canonical	3	394	junction_5	16.39686381163	536	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTTATGTTGTACTG	NA	False	NA	26	True	NA	NA	NA	143383956	143402141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ENSMUSG00000058454.16_2	chr7	+	2530	9	NIC	ENSMUSG00000058454.16	novel	2752	9	NA	NA	-20	-5	combination_of_known_junctions	TRUE	canonical	3	8	junction_1	171.596137412822	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTTATGTTGTACTG	NA	False	NA	26	True	NA	NA	NA	143383950	143402141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_143384003_143387504_143387674_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ENSMUSG00000058454.16_25	chr7	+	2314	7	ISM	ENSMUSG00000058454.16	ENSMUST00000141916.8	2752	9	6556	6	-18	-5	3prime_fragment	FALSE	canonical	3	394	junction_4	15.8324561160506	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTTATGTTGTACTG	NA	False	NA	26	True	NA	NA	NA	143390369	143402141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
ENSMUSG00000058486.12_1	chr6	-	2638	15	FSM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	39	5	-1	-5	multi-exon	FALSE	canonical	2	55	junction_12	11.4653426304081	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCACTTGGTGTCTCTTTC	5815	False	NA	-6	True	NA	NA	NA	34887772	34857365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
ENSMUSG00000058486.12_24	chr6	-	4415	7	ISM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	39	12411	-1	11830	5prime_fragment	FALSE	canonical	2	55	junction_4	9.69106117340442	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGCTTTGGCCGTGGTG	5815	False	NA	-7	True	NA	NA	NA	34887772	34869771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
ENSMUSG00000058486.12_3	chr6	-	1862	8	ISM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	18051	1	17738	-1	3prime_fragment	FALSE	canonical	3	62	junction_6	12.1184628916849	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGTGTCTCTTTCTGGA	8282	False	NA	-2	True	NA	NA	NA	34869760	34857361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275
ENSMUSG00000058498.13_1	chr4	-	623	2	ISM	ENSMUSG00000058498.13	ENSMUST00000076183.12	2466	17	9742	4	167	-4	3prime_fragment	FALSE	canonical	3	28	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAGAGTACAGTGAT	NA	False	NA	NA	False	AATAAA	-14	NA	152393323	152391479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_152392074_152393294
ENSMUSG00000058498.13_14	chr4	-	1463	5	NIC	ENSMUSG00000058498.13	novel	2466	17	NA	NA	781	-5	intron_retention	FALSE	canonical	3	15	junction_3	5.16599457994296	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAGAAGAGTACAGTGA	NA	False	NA	NA	False	AATAAA	-13	NA	152397024	152391480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152392074_152393294_152393361_152395840_152396281_152396527_152396714_152396846
ENSMUSG00000058498.13_16	chr4	-	1433	8	ISM	ENSMUSG00000058498.13	ENSMUST00000076183.12	2466	17	5113	4	-92	-4	3prime_fragment	TRUE	canonical	3	8	junction_7	5.57325977232319	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAGAGTACAGTGAT	NA	False	NA	NA	False	AATAAA	-14	NA	152397952	152391479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_152392074_152393294_152393361_152395840_152395959_152396228_152396281_152396527_152396714_152396846_152397034_152397643_152397742_152397820
ENSMUSG00000058498.13_4	chr4	-	1615	4	NIC	ENSMUSG00000058498.13	novel	2466	17	NA	NA	877	-4	intron_retention	FALSE	canonical	3	16	junction_2	5.24933858267454	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAGAGTACAGTGAT	NA	False	NA	NA	False	AATAAA	-14	NA	152396928	152391479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152392074_152393294_152393361_152395840_152396714_152396846
ENSMUSG00000058498.13_5	chr4	-	2146	5	NIC	ENSMUSG00000058498.13	novel	2466	17	NA	NA	-155	-4	intron_retention	FALSE	canonical	3	8	junction_4	7.26291952316697	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAGAGTACAGTGAT	NA	False	NA	NA	False	AATAAA	-14	NA	152398015	152391479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152392074_152393294_152393361_152395840_152397034_152397643_152397742_152397820
ENSMUSG00000058498.13_6	chr4	-	1974	4	NIC	ENSMUSG00000058498.13	novel	2466	17	NA	NA	40	-5	intron_retention	FALSE	canonical	3	14	junction_3	6.18241233033047	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAGAAGAGTACAGTGA	NA	False	NA	NA	False	AATAAA	-13	NA	152397765	152391480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152392074_152393294_152393361_152395840_152397034_152397643
ENSMUSG00000058498.13_9	chr4	-	2728	4	NIC	ENSMUSG00000058498.13	novel	2466	17	NA	NA	-127	-4	intron_retention	FALSE	canonical	3	8	junction_3	8.2192186706253	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAGAGTACAGTGAT	NA	False	NA	NA	False	AATAAA	-14	NA	152397987	152391479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_152392074_152393294_152393361_152395840_152397742_152397820
ENSMUSG00000058503.12_0	chr5	+	1987	11	FSM	ENSMUSG00000058503.12	ENSMUST00000115527.8	1491	11	-2	-494	0	-4	multi-exon	FALSE	canonical	0	0	junction_10	59.9796632201282	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTTGTTGTCTTTGTG	NA	False	NA	15	True	AGTAAA	-11	NA	3593835	3620234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
ENSMUSG00000058503.12_1	chr5	+	2394	10	FSM	ENSMUSG00000058503.12	ENSMUST00000196059.5	1961	10	-12	-421	-1	-4	multi-exon	FALSE	canonical	0	0	junction_9	63.1977105383095	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTTGTTGTCTTTGTG	NA	False	NA	15	True	AGTAAA	-11	NA	3593831	3620234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
ENSMUSG00000058503.12_3	chr5	+	1932	11	FSM	ENSMUSG00000058503.12	ENSMUST00000199666.5	1450	11	12	-494	6	-4	multi-exon	FALSE	canonical	0	0	junction_10	76.7604064606227	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTTGTTGTCTTTGTG	NA	False	NA	15	True	AGTAAA	-11	NA	3593849	3620234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609137_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
ENSMUSG00000058546.9_0	chr11	-	528	5	FSM	ENSMUSG00000058546.9	ENSMUST00000102483.5	560	5	28	4	28	-4	multi-exon	FALSE	canonical	3	10927	junction_1	3598.81438810061	2954	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAATGCTGCTTGTCAT	5991	False	NA	-18	True	AATATA	-15	NA	78074382	78071764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628_78073813_78074344
ENSMUSG00000058550.16_0	chr16	+	1294	6	FSM	ENSMUSG00000058550.16	ENSMUST00000050705.4	1271	6	-30	7	22	-7	multi-exon	FALSE	canonical	2	17	junction_3	211.400094607358	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGCTTGTGGCTTTT	NA	False	NA	16	True	NA	NA	NA	48104119	48114593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_48104205_48108240_48108359_48109401_48109464_48111376_48111678_48113273_48113470_48114061
ENSMUSG00000058550.16_1	chr16	+	1444	7	FSM	ENSMUSG00000058550.16	ENSMUST00000096045.9	1479	7	33	2	-19	-2	multi-exon	FALSE	canonical	3	369	junction_4	76.5188792971309	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTGTGGCTTTTGTTTT	NA	False	NA	21	True	ACTAAA	-3	NA	48104130	48114598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
ENSMUSG00000058550.16_3	chr16	+	2172	7	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	-18	-7	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_4	181.921839138559	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGCTTGTGGCTTTT	NA	False	NA	16	True	NA	NA	NA	48104131	48114593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48110476_48111376_48111678_48113273_48113470_48114061
ENSMUSG00000058558.13_0	chr5	+	1045	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	44	956	-26	-1	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	1421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTTTCTGTGTTAAGCT	NA	False	NA	-3	True	AATAAA	-15	NA	108048411	108055915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000058558.13_38	chr5	+	526	4	ISM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	3261	956	-351	-1	3prime_fragment	FALSE	canonical	3	7486	junction_2	269.744323387907	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTTTCTGTGTTAAGCT	NA	False	NA	-3	True	AATAAA	-15	NA	108051628	108055915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000058569.9_0	chr13	+	1394	5	FSM	ENSMUSG00000058569.9	ENSMUST00000109905.5	1420	5	-5	31	-5	-21	multi-exon	FALSE	canonical	3	616	junction_1	31.3847096529504	495	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAGAAAAAA	NA	False	NA	NA	False	AATGAA	-29	NA	55740976	55745479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55741171_55741313_55741415_55742517_55742644_55743280_55743428_55744653
ENSMUSG00000058579.6_1	chr4	-	855	5	ISM	ENSMUSG00000058579.6	ENSMUST00000102481.4	1070	8	4133	1	-2825	-1	3prime_fragment	FALSE	canonical	3	8	junction_3	47.6622229863442	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTTGAATGAGTCTGTCT	NA	False	NA	-3	True	AATAAA	-17	NA	141549338	141542273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141542367_141545175_141545329_141546292_141546439_141548635_141548773_141549012
ENSMUSG00000058579.6_2	chr4	-	708	6	ISM	ENSMUSG00000058579.6	ENSMUST00000102481.4	1070	8	3879	3	-3079	-3	3prime_fragment	FALSE	canonical	1	1	junction_5	48.4866992071021	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCCTTGAATGAGTCTGT	9831	False	NA	-5	True	AATAAA	-15	NA	141549592	141542275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141542367_141545175_141545329_141546292_141546439_141548635_141548773_141549012_141549142_141549540
ENSMUSG00000058581.8_0	chr14	-	1105	1	FSM	ENSMUSG00000058581.8	ENSMUST00000182247.2	780	1	-1	-324	-1	324	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACTTAAAAATATAAAACTT	NA	False	NA	NA	False	NA	NA	NA	56248773	56247668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_56247700_56248800
ENSMUSG00000058586.13_0	chr15	+	1320	12	FSM	ENSMUSG00000058586.13	ENSMUST00000078218.11	1371	12	47	4	-12	-1	multi-exon	FALSE	canonical	3	56	junction_2	9.92534113742268	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGTTCCAAGTGGCTGT	NA	False	NA	13	True	AATAAA	-14	NA	82984451	83000871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82984549_82985844_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
ENSMUSG00000058586.13_15	chr15	+	3912	10	NIC	ENSMUSG00000058586.13	novel	2577	11	NA	NA	-15	6	intron_retention	FALSE	canonical	3	56	junction_1	10.4468082431495	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTCACTGAGTTCCAAG	NA	False	NA	6	True	AATAAA	-7	NA	82984448	83000864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
ENSMUSG00000058586.13_7	chr15	+	1217	11	FSM	ENSMUSG00000058586.13	ENSMUST00000166427.8	2577	11	1354	6	83	-3	multi-exon	FALSE	canonical	3	56	junction_1	10.3169763012231	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGAGTTCCAAGTGGCT	NA	False	NA	11	True	AATAAA	-12	NA	82985848	83000869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
ENSMUSG00000058587.10_0	chr9	-	3247	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	4	416	4	-416	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATATTAGCAGACTGTT	NA	False	NA	-7	True	AATAAA	-12	NA	75466935	75405404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
ENSMUSG00000058587.10_3	chr9	-	1302	1	ISM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	60239	410	3646	-410	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGCAGACTGTTGGTCAT	3514	False	NA	-1	True	AATAAA	-18	NA	75406700	75405398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_75405400_75406700
ENSMUSG00000058594.16_0	chr2	-	3536	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-18	0	intron_retention	FALSE	canonical	3	40	junction_19	58.1895824009762	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782336	11747385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774560_11774743_11782242
ENSMUSG00000058594.16_18	chr2	-	3565	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-18	-1	intron_retention	FALSE	canonical	3	40	junction_19	66.9909695406776	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCAGTACTGTCATTTT	NA	False	NA	-1	True	ATTAAA	-36	NA	11782336	11747384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774560_11774743_11782214
ENSMUSG00000058594.16_2	chr2	-	3525	21	FSM	ENSMUSG00000058594.16	ENSMUST00000071564.14	3567	21	42	0	8	0	multi-exon	FALSE	canonical	3	183	junction_20	31.6521721213569	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782351	11747385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
ENSMUSG00000058594.16_6	chr2	-	3535	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-15	0	intron_retention	FALSE	canonical	3	88	junction_20	47.1269296687149	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782333	11747385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
ENSMUSG00000058600.14_0	chr15	-	2469	1	FSM	ENSMUSG00000065899.3	ENSMUST00000083965.3	132	1	-2056	-281	-2056	281	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGTGTCTGTTTG	605	False	NA	-25	True	AATAAA	-22	NA	34443124	34440655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_34440700_34443100
ENSMUSG00000058600.14_1	chr15	-	1438	2	FSM	ENSMUSG00000058600.14	ENSMUST00000136653.2	464	2	-909	-65	334	0	multi-exon	FALSE	canonical	3	4307	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGTGTCTGTTTG	1009	False	NA	-25	True	AATAAA	-22	NA	34442720	34440655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_34440751_34441377
ENSMUSG00000058600.14_2	chr15	-	536	4	FSM	ENSMUSG00000058600.14	ENSMUST00000009039.6	570	4	34	0	-28	0	multi-exon	FALSE	canonical	3	4307	junction_1	558.07426825548	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGTGTCTGTTTG	395	False	NA	-25	True	AATAAA	-22	NA	34443334	34440655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170
ENSMUSG00000058600.14_3	chr15	-	499	5	FSM	ENSMUSG00000058600.14	ENSMUST00000079735.12	886	5	382	5	1	0	multi-exon	FALSE	canonical	3	3551	junction_4	804.634194836387	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGTGTCTGTTTG	325	False	NA	-25	True	AATAAA	-22	NA	34443404	34440655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
ENSMUSG00000058600.14_4	chr15	-	449	5	NNC	ENSMUSG00000058600.14	novel	570	4	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	3	777	junction_4	1906.75842400132	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGTGTCTGTTTG	393	False	NA	-25	True	AATAAA	-22	NA	34443336	34440655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443312
ENSMUSG00000058603.11_0	chr1	+	493	1	FSM	ENSMUSG00000058603.11	ENSMUST00000121497.2	414	1	-39	-40	-39	40	mono-exon	FALSE	NA	NA	NA	NA	NA	371	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	127966266	127966759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_127966300_127966800
ENSMUSG00000058625.7_0	chr18	+	1601	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-101	-145	-101	145	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGAAAAAAAAAAAG	NA	False	NA	NA	False	AGTAAA	-7	NA	82356485	82358086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_82356500_82358100
ENSMUSG00000058626.17_0	chr17	-	2139	18	ISM	ENSMUSG00000058626.17	ENSMUST00000120717.8	2591	22	16319	-25	16291	25	3prime_fragment	FALSE	canonical	0	0	junction_6	2.25072076114223	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGGGGCTCTGCAAATG	NA	False	NA	NA	False	AATAAA	-39	NA	45953932	45941104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_45941538_45941651_45941711_45942713_45942828_45942934_45943014_45943306_45943376_45943624_45943690_45943800_45943859_45943965_45944032_45944294_45944335_45944697_45944910_45945193_45945206_45949620_45949797_45949994_45950159_45950335_45950411_45950548_45950635_45950728_45950813_45953393_45953563_45953754
ENSMUSG00000058638.15_1	chr7	+	3332	8	FSM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	258	1	-18	-1	multi-exon	FALSE	canonical	3	285	junction_1	17.0617127163813	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGCTGGACTATAGCGTG	NA	False	NA	26	True	NA	NA	NA	12568945	12584503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
ENSMUSG00000058638.15_36	chr7	+	1701	1	ISM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	14115	1	12585	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGCTGGACTATAGCGTG	NA	False	NA	26	True	NA	NA	NA	12582802	12584503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_12582800_12584500
ENSMUSG00000058655.10_0	chr15	+	3696	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	150	8	59	-8	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	1289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGATGGTTAATGTTG	NA	False	NA	41	True	AATAAA	-11	NA	101982357	102005600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_24	chr15	+	3659	14	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	8199	8	-4052	-8	3prime_fragment	FALSE	canonical	3	745	junction_2	66.2960903646145	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGATGGTTAATGTTG	NA	False	NA	41	True	AATAAA	-11	NA	101990406	102005600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_33	chr15	+	3434	13	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	10471	8	-1780	-8	3prime_fragment	FALSE	canonical	3	745	junction_1	66.1337029559563	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGATGGTTAATGTTG	NA	False	NA	41	True	AATAAA	-11	NA	101992678	102005600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_38	chr15	+	3114	10	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	12754	8	503	-8	3prime_fragment	FALSE	canonical	3	804	junction_1	47.3497624070069	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGATGGTTAATGTTG	NA	False	NA	41	True	AATAAA	-11	NA	101994961	102005600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_40	chr15	+	2943	9	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	14901	8	2650	-8	3prime_fragment	FALSE	canonical	3	809	junction_2	43.485450152896	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGATGGTTAATGTTG	NA	False	NA	41	True	AATAAA	-11	NA	101997108	102005600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_43	chr15	+	2784	8	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	15163	8	2912	-8	3prime_fragment	FALSE	canonical	3	809	junction_1	45.8066032135017	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGATGGTTAATGTTG	NA	False	NA	41	True	AATAAA	-11	NA	101997370	102005600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_45	chr15	+	2553	7	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	16229	8	3978	-8	3prime_fragment	FALSE	canonical	3	820	junction_6	39.4985935051982	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGATGGTTAATGTTG	NA	False	NA	41	True	AATAAA	-11	NA	101998436	102005600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_50	chr15	+	1442	1	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	21951	8	1160	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGATGGTTAATGTTG	4669	False	NA	41	True	AATAAA	-11	NA	102004158	102005600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_102004200_102005600
ENSMUSG00000058672.8_0	chr13	-	1600	4	FSM	ENSMUSG00000058672.8	ENSMUST00000056427.10	1610	4	1	9	1	-9	multi-exon	FALSE	canonical	3	289	junction_2	19.2006944318862	364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATCTATGGTCCTTTTC	NA	False	NA	NA	False	AATAAA	-13	NA	34261989	34258265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_34259512_34260160_34260272_34260531_34260641_34261855
ENSMUSG00000058690.15_0	chr14	-	2971	1	ISM	ENSMUSG00000058690.15	ENSMUST00000067700.13	7334	10	90774	7	8447	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTGTGCTTGTCTCCAC	NA	False	NA	NA	False	AATAAA	-20	NA	36599870	36596899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_36596900_36599900
ENSMUSG00000058690.15_1	chr14	-	7390	10	FSM	ENSMUSG00000058690.15	ENSMUST00000067700.13	7334	10	-65	9	25	-9	multi-exon	FALSE	canonical	3	47	junction_1	10.4432623444526	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAAGTGTGCTTGTCTCC	NA	False	NA	NA	False	AATAAA	-18	NA	36690709	36596901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_36601720_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768_36663222_36690498
ENSMUSG00000058690.15_11	chr14	-	6824	10	ISM	ENSMUSG00000058690.15	ENSMUST00000090024.11	7509	11	27955	7	-877	-7	3prime_fragment	FALSE	canonical	3	13	junction_1	24.4409088352164	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTGTGCTTGTCTCCAC	NA	False	NA	NA	False	AATAAA	-20	NA	36662779	36596899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_36601720_36612298_36612384_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768
ENSMUSG00000058690.15_4	chr14	-	6298	9	ISM	ENSMUSG00000058690.15	ENSMUST00000067700.13	7334	10	28304	9	-438	-9	3prime_fragment	FALSE	canonical	3	47	junction_1	11.056672193748	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAAGTGTGCTTGTCTCC	NA	False	NA	NA	False	AATAAA	-18	NA	36662340	36596901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_36601720_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768
ENSMUSG00000058690.15_8	chr14	-	7471	11	FSM	ENSMUSG00000058690.15	ENSMUST00000090024.11	7509	11	25	13	25	-13	multi-exon	FALSE	canonical	3	13	junction_1	23.4444023169711	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATAAAAGTGTGCTTGT	NA	False	NA	NA	False	AATAAA	-14	NA	36690709	36596905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_36601720_36612298_36612384_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768_36663222_36690498
ENSMUSG00000058704.10_0	chr17	-	1675	9	FSM	ENSMUSG00000058704.10	ENSMUST00000233514.3	3163	9	-184	1672	-184	-6	multi-exon	FALSE	canonical	3	239	junction_3	25.6502923959942	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAATAGTCTGATTTAAA	NA	False	NA	NA	False	AATAAA	-13	NA	74602042	74507702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686
ENSMUSG00000058704.10_1	chr17	-	1471	10	NIC	ENSMUSG00000058704.10	novel	3163	9	NA	NA	10	-6	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	80.0302411977675	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAATAGTCTGATTTAAA	NA	False	NA	NA	False	AATAAA	-13	NA	74602481	74507702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686_74601765_74602407
ENSMUSG00000058704.10_4	chr17	-	1592	8	ISM	ENSMUSG00000058704.10	ENSMUST00000232987.2	1041	9	455	-363	-178	-6	3prime_fragment	FALSE	canonical	2	11	junction_2	97.4017558405203	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAATAGTCTGATTTAAA	NA	False	NA	NA	False	AATAAA	-13	NA	74602036	74507702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_74508321_74509255_74509361_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686
ENSMUSG00000058706.6_0	chr6	+	4605	4	FSM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	-6	6	2	-6	multi-exon	FALSE	canonical	3	33	junction_1	6.54896090146283	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCATTTTTTTGCCAAAA	8320	False	NA	9	True	AATAAA	-9	NA	72324310	72330125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_72324499_72324575_72324695_72325511_72325664_72325979
ENSMUSG00000058706.6_1	chr6	+	5003	2	FSM	ENSMUSG00000058706.6	ENSMUST00000205472.2	1033	2	1	-3971	1	-2	multi-exon	FALSE	canonical	3	49	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTTTTGCCAAAAGTTG	8319	False	NA	13	True	AATAAA	-13	NA	72324309	72330129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_72324695_72325511
ENSMUSG00000058706.6_2	chr6	+	3170	1	FSM	ENSMUSG00000058706.6	ENSMUST00000205578.2	3900	1	2661	-1931	2611	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTTTGCCAAAAGTTGT	NA	False	NA	14	True	AATAAA	-14	NA	72326960	72330130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_72327000_72330100
ENSMUSG00000058706.6_3	chr6	+	4923	3	ISM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	-6	4	2	-4	intron_retention	FALSE	canonical	3	33	junction_1	8	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATTTTTTTGCCAAAAGT	8320	False	NA	11	True	AATAAA	-11	NA	72324310	72330127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_72324499_72324575_72324695_72325511
ENSMUSG00000058706.6_5	chr6	+	4642	3	FSM	ENSMUSG00000058706.6	ENSMUST00000204152.2	2118	3	1	-2525	1	-6	multi-exon	FALSE	canonical	3	40	junction_2	4.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCATTTTTTTGCCAAAA	8360	False	NA	9	True	AATAAA	-9	NA	72324350	72330125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_72324695_72325511_72325664_72325979
ENSMUSG00000058709.12_1	chr7	-	2059	6	FSM	ENSMUSG00000058709.12	ENSMUST00000080058.11	2107	6	47	1	47	0	multi-exon	FALSE	canonical	3	451	junction_5	57.8840219749803	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTTGTATTCCTCTCT	NA	False	NA	-4	True	AATAAA	-19	NA	26866180	26858083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
ENSMUSG00000058709.12_3	chr7	-	2078	6	FSM	ENSMUSG00000058709.12	ENSMUST00000108382.2	1756	6	7	-329	7	0	multi-exon	FALSE	canonical	3	45	junction_5	218.816452763498	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTTGTATTCCTCTCT	NA	False	NA	-4	True	AATAAA	-19	NA	26865831	26858083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26865740
ENSMUSG00000058709.12_4	chr7	-	1682	5	ISM	ENSMUSG00000058709.12	ENSMUST00000108382.2	1756	6	990	-329	859	0	3prime_fragment	FALSE	canonical	3	566	junction_4	16.7984374273323	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTTGTATTCCTCTCT	NA	False	NA	-4	True	AATAAA	-19	NA	26864848	26858083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044
ENSMUSG00000058709.12_5	chr7	-	1695	6	NNC	ENSMUSG00000058709.12	novel	2107	6	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	232.127206505399	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTTGTATTCCTCTCT	NA	False	NA	-4	True	AATAAA	-19	NA	26866179	26858083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864407_26865154_26866108
ENSMUSG00000058729.14_0	chr1	+	2957	15	FSM	ENSMUSG00000058729.14	ENSMUST00000192561.6	3160	15	195	8	-8	-8	multi-exon	FALSE	canonical	3	75	junction_1	15.1320716307033	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTAATGCTGTCTGAGA	NA	False	NA	1	True	AATAAA	-11	NA	180468909	180518244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180468963_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
ENSMUSG00000058729.14_1	chr1	+	3035	16	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	9	-8	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	31.7940595429747	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTAATGCTGTCTGAGA	NA	False	NA	1	True	AATAAA	-11	NA	180468907	180518244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_180468963_180469481_180469558_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
ENSMUSG00000058729.14_5	chr1	+	3094	16	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	32.1742478112888	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTAATGCTGTCTGAGA	NA	False	NA	1	True	AATAAA	-11	NA	180468915	180518244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_180468963_180469414_180469558_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
ENSMUSG00000058741.5_0	chr7	+	1438	2	ISM	ENSMUSG00000058741.5	ENSMUST00000080288.5	1240	3	-114	0	-114	0	intron_retention	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTGATTTTCAGTGAGT	2011	False	NA	NA	False	AATAAA	-14	NA	25000721	25003557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_25000900_25002297
ENSMUSG00000058741.5_2	chr7	+	1352	3	FSM	ENSMUSG00000058741.5	ENSMUST00000080288.5	1240	3	-106	-6	-106	6	multi-exon	FALSE	canonical	2	7	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTCAGTGAGTGGCTGT	2019	False	NA	NA	False	AATAAA	-20	NA	25000729	25003563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_25000900_25002297_25002923_25003006
ENSMUSG00000058743.7_0	chr7	-	2372	2	ISM	ENSMUSG00000058743.7	ENSMUST00000071937.7	2681	3	4784	8	3346	-8	3prime_fragment	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTTTCTGTTTGTTCTGT	5645	False	NA	NA	False	TATAAA	-12	NA	45469422	45465891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45467637_45468795
ENSMUSG00000058748.10_1	chr8	+	1687	4	FSM	ENSMUSG00000058748.10	ENSMUST00000202692.5	2364	4	-6	683	-6	168	multi-exon	FALSE	canonical	3	165	junction_1	17.1075032271418	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAATGTGGTAAAGTCTT	NA	False	NA	4	True	NA	NA	NA	4663160	4679548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4663279_4675839_4675967_4676163_4676225_4678167
ENSMUSG00000058748.10_2	chr8	+	1774	5	NNC	ENSMUSG00000058748.10	novel	2364	4	NA	NA	24	167	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	75.6405975650642	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCAATGTGGTAAAGTCT	NA	False	NA	3	True	NA	NA	NA	4663190	4679547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_4663279_4674903_4675022_4675839_4675967_4676163_4676225_4678167
ENSMUSG00000058748.10_7	chr8	+	1518	3	FSM	ENSMUSG00000058748.10	ENSMUST00000073201.6	1401	3	51	-168	51	168	multi-exon	FALSE	canonical	3	193	junction_2	6.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAATGTGGTAAAGTCTT	NA	False	NA	4	True	NA	NA	NA	4675890	4679548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_4675967_4676163_4676225_4678167
ENSMUSG00000058748.10_9	chr8	+	980	1	ISM	ENSMUSG00000058748.10	ENSMUST00000202692.5	2364	4	15406	679	2733	172	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTAAAGTCTTTGTG	39	False	NA	8	True	NA	NA	NA	4678572	4679552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_4678600_4679600
ENSMUSG00000058755.4_0	chr11	+	2272	3	FSM	ENSMUSG00000058755.4	ENSMUST00000075221.3	2272	3	-2	2	-2	-2	multi-exon	TRUE	canonical	3	46	junction_2	1.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGGTGTCAGTCTTTT	8291	False	NA	3	True	TTTAAA	-16	NA	4186417	4191024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4186914_4188405_4188543_4189385
ENSMUSG00000058755.4_1	chr11	+	2143	2	FSM	ENSMUSG00000058755.4	ENSMUST00000131764.2	773	2	-10	-1360	-10	-2	multi-exon	FALSE	canonical	3	8	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGGTGTCAGTCTTTT	8283	False	NA	3	True	TTTAAA	-16	NA	4186409	4191024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_4186914_4189385
ENSMUSG00000058755.4_2	chr11	+	1916	3	NNC	ENSMUSG00000058755.4	novel	773	2	NA	NA	1260	-2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	20	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGGTGTCAGTCTTTT	808	False	NA	3	True	TTTAAA	-16	NA	4187679	4191024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_4187820_4188405_4188543_4189385
ENSMUSG00000058755.4_3	chr11	+	1331	1	ISM	ENSMUSG00000058755.4	ENSMUST00000075221.3	2272	3	3274	2	3274	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGGTGTCAGTCTTTT	2822	False	NA	3	True	TTTAAA	-16	NA	4189693	4191024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_4189700_4191000
ENSMUSG00000058756.14_1	chr11	+	2465	10	FSM	ENSMUSG00000058756.14	ENSMUST00000064187.12	2452	10	-15	2	-15	-2	multi-exon	FALSE	canonical	3	10	junction_1	13.6055544213057	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCGTGTGCCTCCTCCA	6275	False	NA	27	True	NA	NA	NA	98632621	98659830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98632833_98644115_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103_98655232_98658982
ENSMUSG00000058756.14_11	chr11	+	1030	3	ISM	ENSMUSG00000058756.14	ENSMUST00000064187.12	2452	10	21918	7	10143	-7	3prime_fragment	FALSE	canonical	3	46	junction_2	2	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGAACTGCGTGTGCCTC	7791	False	NA	22	True	NA	NA	NA	98654554	98659825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98654614_98655103_98655232_98658982
ENSMUSG00000058756.14_2	chr11	+	2362	10	NIC	ENSMUSG00000058756.14	novel	2452	10	NA	NA	-34	-7	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	11.7104996677826	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGAACTGCGTGTGCCTC	6256	False	NA	22	True	NA	NA	NA	98632602	98659825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_98632833_98644115_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103_98655232_98659099
ENSMUSG00000058756.14_3	chr11	+	2099	9	NIC	ENSMUSG00000058756.14	novel	2452	10	NA	NA	2	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	15.8271917913444	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCGTGTGCCTCCTCCA	6292	False	NA	27	True	NA	NA	NA	98632638	98659830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_98632833_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103_98655232_98658982
ENSMUSG00000058756.14_6	chr11	+	1949	9	ISM	ENSMUSG00000058756.14	ENSMUST00000064187.12	2452	10	11779	7	4	-7	3prime_fragment	FALSE	canonical	3	14	junction_5	13.1808336231059	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGAACTGCGTGTGCCTC	NA	False	NA	22	True	NA	NA	NA	98644415	98659825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103_98655232_98658982
ENSMUSG00000058756.14_8	chr11	+	1536	5	ISM	ENSMUSG00000058756.14	ENSMUST00000064187.12	2452	10	19957	7	8182	-7	3prime_fragment	FALSE	canonical	3	14	junction_1	14	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGAACTGCGTGTGCCTC	5830	False	NA	22	True	NA	NA	NA	98652593	98659825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98652753_98653746_98653894_98654354_98654614_98655103_98655232_98658982
ENSMUSG00000058756.14_9	chr11	+	1432	4	ISM	ENSMUSG00000058756.14	ENSMUST00000064187.12	2452	10	21055	7	9280	-7	3prime_fragment	FALSE	canonical	3	34	junction_1	6.79869268479038	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGAACTGCGTGTGCCTC	6928	False	NA	22	True	NA	NA	NA	98653691	98659825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98653894_98654354_98654614_98655103_98655232_98658982
ENSMUSG00000058761.6_0	chr7	-	2587	1	ISM	ENSMUSG00000058761.6	ENSMUST00000080817.6	7147	6	57600	8	42886	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAAACAGACTATTTCT	NA	False	NA	-9	True	AGTAAA	-12	NA	99572055	99569468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_99569500_99572100
ENSMUSG00000058761.6_1	chr7	-	4911	6	FSM	ENSMUSG00000058761.6	ENSMUST00000080817.6	7147	6	0	2236	0	-2236	multi-exon	FALSE	canonical	3	16	junction_4	4.83321838943783	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAGAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	99629655	99571696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_99575691_99576299_99576400_99584368_99584488_99592165_99592313_99604673_99604748_99629178
ENSMUSG00000058761.6_3	chr7	-	4465	4	ISM	ENSMUSG00000058761.6	ENSMUST00000080817.6	7147	6	37422	2052	22708	-2052	3prime_fragment	FALSE	canonical	3	17	junction_1	4.78423336480244	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTACAAACTGGCCACTGAC	NA	False	NA	NA	False	ATTAAA	-20	NA	99592233	99571512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_99575691_99576299_99576400_99584368_99584488_99592165
ENSMUSG00000058761.6_9	chr7	-	4736	5	NIC	ENSMUSG00000058761.6	novel	7147	6	NA	NA	40	-2224	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	10.2316909648406	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAGAAAGAAAAAAGTCT	NA	False	NA	NA	False	NA	NA	NA	99629615	99571684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_99575691_99576299_99576400_99584368_99584488_99604673_99604748_99629178
ENSMUSG00000058773.3_0	chr13	-	809	1	FSM	ENSMUSG00000058773.3	ENSMUST00000080511.3	743	1	10	-76	10	76	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTATGCTTTCCATGGT	NA	False	NA	NA	False	NA	NA	NA	21964785	21963976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_21964000_21964800
ENSMUSG00000058793.15_1	chr2	+	3734	14	NNC	ENSMUSG00000058793.15	novel	8396	13	NA	NA	2	2290	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	118.061161563922	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGTCCCGTGTTTGTCAC	5339	False	NA	17	True	AATAAA	-22	NA	132105162	132149538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816
ENSMUSG00000058793.15_39	chr2	+	3519	14	NNC	ENSMUSG00000058793.15	novel	8073	13	NA	NA	-13	2290	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	131.49004957066	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGTCCCGTGTTTGTCAC	NA	False	NA	17	True	AATAAA	-22	NA	132127845	132149538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816
ENSMUSG00000058793.15_4	chr2	+	1587	13	FSM	ENSMUSG00000058793.15	ENSMUST00000103181.11	8396	13	141	6668	48	54	multi-exon	FALSE	canonical	2	258	junction_5	60.9331942923286	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCACCGTCATTTTTTTT	5385	False	NA	9	True	AATGAA	-11	NA	132105208	132147302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
ENSMUSG00000058793.15_50	chr2	+	3505	14	NNC	ENSMUSG00000058793.15	novel	627	5	NA	NA	3462	2290	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.186787055044	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGTCCCGTGTTTGTCAC	NA	False	NA	17	True	AATAAA	-22	NA	132131320	132149538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_132131347_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816
ENSMUSG00000058793.15_78	chr2	+	3848	1	ISM	ENSMUSG00000058793.15	ENSMUST00000103181.11	8396	13	45053	2	6905	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATTGTGCGTGTTTTTTG	NA	False	NA	NA	False	AATAAA	-15	NA	132150120	132153968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_132150100_132154000
ENSMUSG00000058794.13_1	chr15	-	1659	3	FSM	ENSMUSG00000058794.13	ENSMUST00000075192.13	1697	3	30	8	30	0	multi-exon	FALSE	canonical	0	0	junction_2	8	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGCTTTCTATTGTGTC	4201	False	NA	NA	False	CATAAA	-12	NA	103163836	103156646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103157876_103159355_103159526_103163576
ENSMUSG00000058794.13_4	chr15	-	1810	3	FSM	ENSMUSG00000058794.13	ENSMUST00000133600.8	1605	3	-208	3	3	0	multi-exon	FALSE	canonical	1	5	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGCTTTCTATTGTGTC	7937	False	NA	NA	False	CATAAA	-12	NA	103160100	103156646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_103157876_103159355_103159526_103159689
ENSMUSG00000058799.17_0	chr10	+	2129	15	FSM	ENSMUSG00000058799.17	ENSMUST00000217908.2	1350	15	-15	-764	0	-1	multi-exon	FALSE	canonical	3	980	junction_10	363.653962004586	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGATGCTGTCTCGGTTT	NA	False	NA	22	True	AATAAA	-24	NA	111309087	111332744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
ENSMUSG00000058799.17_160	chr10	+	1611	1	ISM	ENSMUSG00000058799.17	ENSMUST00000218828.2	3934	14	15915	8	2628	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATACACTGGTGATAT	NA	False	NA	NA	False	AATAAA	-16	NA	111332392	111334003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_111332400_111334000
ENSMUSG00000058799.17_20	chr10	+	1319	14	FSM	ENSMUSG00000058799.17	ENSMUST00000219961.2	1512	14	9	184	-6	1	multi-exon	FALSE	canonical	3	75	junction_13	616.19895158057	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGTGTTGGGAAATTTT	NA	False	NA	17	True	AATAAA	-18	NA	111309096	111331005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111330911
ENSMUSG00000058799.17_3	chr10	+	1479	16	FSM	ENSMUSG00000058799.17	ENSMUST00000065917.16	1486	16	4	3	0	-3	multi-exon	TRUE	canonical	3	684	junction_15	463.449884621364	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGGGATGCTGTCTCGGT	NA	False	NA	20	True	AATAAA	-22	NA	111309087	111332742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
ENSMUSG00000058799.17_4	chr10	+	1411	13	FSM	ENSMUSG00000058799.17	ENSMUST00000219143.2	1365	13	-53	7	1	-7	multi-exon	FALSE	canonical	3	980	junction_10	384.309843167665	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCAACATTTTTTTTTTT	NA	False	NA	-3	True	AATAAA	-14	NA	111309088	111330863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655
ENSMUSG00000058806.16_1	chr10	-	2880	35	NIC	ENSMUSG00000058806.16	novel	3162	41	NA	NA	-10	1	combination_of_known_splicesites	TRUE	canonical	0	0	junction_33	5.77078011313781	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCCTGGTTAATCTCTAAA	NA	False	NA	-2	True	AATAAA	-15	NA	61814897	61674013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_61674488_61675856_61675896_61679346_61679434_61684954_61684991_61685935_61685990_61686890_61686945_61692116_61692198_61692560_61692588_61693366_61693409_61696218_61696264_61698406_61698551_61698822_61698868_61699719_61699783_61702169_61702194_61703230_61703300_61703609_61703655_61705302_61705357_61705939_61706027_61707068_61707114_61709772_61709800_61710516_61710550_61712046_61712092_61720454_61720491_61721466_61721494_61723027_61723136_61728734_61728762_61729693_61729721_61729812_61729840_61731112_61731140_61732124_61732152_61732917_61732954_61738868_61738920_61747485_61747513_61797067_61797138_61814127
ENSMUSG00000058806.16_14	chr10	-	2984	37	NIC	ENSMUSG00000058806.16	novel	3162	41	NA	NA	14	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_35	5.79025095940059	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCATGATCCTGGTTAAT	NA	False	NA	-9	True	AATAAA	-8	NA	61814873	61674020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_61674488_61675856_61675896_61679346_61679434_61684954_61684991_61685935_61685990_61686890_61686945_61689135_61689172_61692116_61692198_61692560_61692588_61693366_61693409_61696218_61696264_61697793_61697893_61698406_61698551_61698822_61698868_61699719_61699783_61702169_61702194_61703230_61703300_61703609_61703655_61705302_61705357_61705939_61706027_61707068_61707114_61709772_61709800_61710516_61710550_61712046_61712092_61720454_61720491_61721466_61721494_61723027_61723136_61728734_61728762_61729693_61729721_61729812_61729840_61731112_61731140_61732124_61732152_61732917_61732954_61738868_61738920_61747485_61747513_61797067_61797138_61814127
ENSMUSG00000058806.16_3	chr10	-	2945	36	NIC	ENSMUSG00000058806.16	novel	3162	41	NA	NA	-9	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_34	6.32365174788835	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCATGATCCTGGTTAAT	NA	False	NA	-9	True	AATAAA	-8	NA	61814861	61674020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_61674488_61675856_61675896_61679346_61679434_61684954_61684991_61685935_61685990_61686890_61686945_61692116_61692198_61692560_61692588_61693366_61693409_61696218_61696264_61697793_61697893_61698406_61698551_61698822_61698868_61699719_61699783_61702169_61702194_61703230_61703300_61703609_61703655_61705302_61705357_61705939_61706027_61707068_61707114_61709772_61709800_61710516_61710550_61712046_61712092_61720454_61720491_61721466_61721494_61723027_61723136_61728734_61728762_61729693_61729721_61729812_61729840_61732124_61732152_61732917_61732954_61738868_61738920_61744460_61744497_61747485_61747513_61797067_61797138_61814127
ENSMUSG00000058806.16_4	chr10	-	2726	36	NIC	ENSMUSG00000058806.16	novel	3162	41	NA	NA	-22	-264	combination_of_known_splicesites	FALSE	canonical	0	0	junction_34	5.3822080288025	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTGTCTGTGCGTCTG	NA	False	NA	NA	False	TATAAA	-15	NA	61814909	61674278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_61674488_61675856_61675896_61679346_61679434_61684954_61684991_61685935_61685990_61686890_61686945_61692116_61692198_61692560_61692588_61693366_61693409_61696218_61696264_61697793_61697893_61698406_61698551_61698822_61698868_61699719_61699783_61702169_61702194_61703230_61703300_61703609_61703655_61705302_61705357_61705939_61706027_61707068_61707114_61709772_61709800_61710516_61710550_61712046_61712092_61720454_61720491_61721466_61721494_61723027_61723136_61728734_61728762_61729693_61729721_61729812_61729840_61731112_61731140_61732124_61732152_61732917_61732954_61738868_61738920_61747485_61747513_61797067_61797138_61814127
ENSMUSG00000058806.16_6	chr10	-	2206	38	NIC	ENSMUSG00000058806.16	novel	3162	41	NA	NA	-375	-252	combination_of_known_splicesites	FALSE	canonical	0	0	junction_36	6.49065181575979	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGTCTGCTCCTAATGTTG	NA	False	NA	NA	False	TATAAA	-27	NA	61814275	61674266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_61674488_61675856_61675896_61679346_61679434_61684954_61684991_61685935_61685990_61686890_61686945_61692116_61692198_61692560_61692588_61693366_61693409_61696218_61696264_61697793_61697893_61698406_61698551_61698822_61698868_61699719_61699783_61702169_61702194_61703230_61703300_61703609_61703655_61705302_61705357_61705939_61706027_61707068_61707114_61709772_61709800_61710516_61710550_61712046_61712092_61720454_61720491_61721466_61721494_61723027_61723136_61725857_61725924_61728734_61728762_61729693_61729721_61729812_61729840_61731112_61731140_61732124_61732152_61732917_61732954_61738868_61738920_61744460_61744497_61747485_61747513_61797067_61797138_61814127
ENSMUSG00000058806.16_7	chr10	-	2616	36	NIC	ENSMUSG00000058806.16	novel	3162	41	NA	NA	-10	-264	combination_of_known_splicesites	FALSE	canonical	0	0	junction_34	6.25616430704427	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTGTCTGTGCGTCTG	NA	False	NA	NA	False	TATAAA	-15	NA	61814862	61674278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_61674488_61675856_61675896_61679346_61679434_61684954_61684991_61685935_61685990_61686890_61686945_61692116_61692198_61692560_61692588_61693366_61693409_61696218_61696264_61698406_61698551_61698822_61698868_61699719_61699783_61702169_61702194_61703230_61703300_61703609_61703655_61705302_61705357_61705939_61706027_61707068_61707114_61709772_61709800_61710516_61710550_61712046_61712092_61720454_61720491_61721466_61721494_61723027_61723136_61728734_61728762_61729693_61729721_61729812_61729840_61731112_61731140_61732124_61732152_61732917_61732954_61738868_61738920_61744460_61744497_61747485_61747513_61797067_61797138_61814127
ENSMUSG00000058809.9_0	chr11	+	2151	1	FSM	ENSMUSG00000058809.9	ENSMUST00000119713.2	1722	1	-10	-419	-10	419	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAACCTTTGTGTAATAAAA	8672	False	NA	-41	True	NA	NA	NA	41389553	41391704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_41389600_41391700
ENSMUSG00000058818.14_0	chr7	-	176	1	ISM	ENSMUSG00000058818.14	ENSMUST00000078451.7	3824	15	8783	15	8755	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTAAAAAGTAGACCAA	5784	False	NA	NA	False	NA	NA	NA	3714598	3714422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_3714400_3714600
ENSMUSG00000058833.12_0	chr8	-	658	5	FSM	ENSMUSG00000058833.12	ENSMUST00000075175.12	671	5	12	1	-3	-1	multi-exon	FALSE	canonical	3	754	junction_4	53.0518614188041	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTCCCATCAGCTCTGT	NA	False	NA	-9	True	AATAAA	-16	NA	70959390	70956945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70959146_70959230_70959311
ENSMUSG00000058833.12_2	chr8	-	598	4	FSM	ENSMUSG00000058833.12	ENSMUST00000133683.8	632	4	33	1	33	-1	multi-exon	FALSE	canonical	3	147	junction_3	338.518340222013	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTCCCATCAGCTCTGT	NA	False	NA	-9	True	AATAAA	-16	NA	70959043	70956945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70958941
ENSMUSG00000058833.12_3	chr8	-	580	4	FSM	ENSMUSG00000058833.12	ENSMUST00000135773.8	725	4	141	4	119	-1	multi-exon	FALSE	canonical	3	774	junction_3	46.3968389727864	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTCCCATCAGCTCTGT	NA	False	NA	-9	True	AATAAA	-16	NA	70959230	70956945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70959146
ENSMUSG00000058835.15_13	chr2	-	2950	9	FSM	ENSMUSG00000058835.15	ENSMUST00000149719.8	3303	9	67	286	11	-3	multi-exon	FALSE	canonical	3	21	junction_2	106.193220122567	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAATTTGGATATTGT	NA	False	NA	-10	True	AATAAA	-13	NA	22930186	22830383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_22832060_22836587_22836774_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ENSMUSG00000058835.15_16	chr2	-	2945	9	NIC	ENSMUSG00000058835.15	novel	3360	10	NA	NA	17	-5	combination_of_known_junctions	FALSE	canonical	3	21	junction_2	102.292396467186	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGAAAAATTTGGATATT	NA	False	NA	-12	True	AATAAA	-11	NA	22930180	22830385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_22832060_22836587_22836774_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ENSMUSG00000058835.15_2	chr2	-	3037	10	FSM	ENSMUSG00000058835.15	ENSMUST00000140164.8	3403	10	67	299	11	-3	multi-exon	FALSE	canonical	3	130	junction_4	62.0443887296789	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAATTTGGATATTGT	NA	False	NA	-10	True	AATAAA	-13	NA	22930186	22830383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ENSMUSG00000058835.15_6	chr2	-	3037	10	FSM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	22	301	12	-5	multi-exon	FALSE	canonical	3	161	junction_4	54.5400521080666	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGAAAAATTTGGATATT	NA	False	NA	-12	True	AATAAA	-11	NA	22930185	22830385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ENSMUSG00000058835.15_9	chr2	-	1161	1	ISM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	98663	299	5678	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAATTTGGATATTGT	NA	False	NA	-10	True	AATAAA	-13	NA	22831544	22830383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_22830400_22831500
ENSMUSG00000058838.10_0	chr9	+	541	1	FSM	ENSMUSG00000058838.10	ENSMUST00000078766.10	467	1	-37	-37	-37	37	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGCATTACATT	NA	False	NA	NA	False	AATAAA	-15	NA	83291675	83292216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_83291700_83292200
ENSMUSG00000058881.14_18	chr18	+	3912	5	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15024	1776	at_least_one_novel_splicesite	FALSE	canonical	3	187	junction_2	10.2713192920871	368	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGAAGGTGTCGTCTGTG	NA	False	NA	13	True	ATTAAA	-20	NA	82990908	83021601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_82990974_83004868_83006324_83011194_83011315_83012594_83012663_83019397
ENSMUSG00000058881.14_36	chr18	+	3172	4	ISM	ENSMUSG00000058881.14	ENSMUST00000071233.7	7703	6	72787	1838	-389	1776	3prime_fragment	FALSE	canonical	3	187	junction_1	11.7851130197758	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGAAGGTGTCGTCTGTG	8459	False	NA	13	True	ATTAAA	-20	NA	83005543	83021601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_83006324_83011194_83011315_83012594_83012663_83019397
ENSMUSG00000058881.14_41	chr18	+	3131	1	ISM	ENSMUSG00000058881.14	ENSMUST00000171238.8	7725	6	91206	99	14277	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATATTCACTCTATTG	NA	False	NA	-47	True	ATTAAA	-13	NA	83020209	83023340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_83020200_83023300
ENSMUSG00000058883.17_1	chr13	-	2439	4	FSM	ENSMUSG00000058883.17	ENSMUST00000109742.11	2416	4	-29	6	4	-5	multi-exon	FALSE	canonical	1	2	junction_1	6.68331255192114	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTATCGTCAGTGTCGTG	NA	False	NA	-5	True	AATAAA	-14	NA	67229605	67217468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67219593_67222149_67222246_67222896_67223024_67229513
ENSMUSG00000058886.10_10	chr7	-	5387	11	NIC	ENSMUSG00000058886.10	novel	2135	12	NA	NA	-490	2	intron_retention	FALSE	canonical	0	0	junction_10	42.7906531850123	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGAATGTTGTCAAGCCA	NA	False	NA	-5	True	AATAAA	-26	NA	140908093	140877095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140877530_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140904354
ENSMUSG00000058886.10_2	chr7	-	5462	12	NIC	ENSMUSG00000058886.10	novel	2121	13	NA	NA	-477	0	intron_retention	FALSE	canonical	0	0	junction_11	32.0206544912746	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTGAATGTTGTCAAGC	NA	False	NA	-7	True	AATAAA	-24	NA	140908080	140877097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140877530_140881512_140881603_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140904354
ENSMUSG00000058886.10_23	chr7	-	2634	12	NIC	ENSMUSG00000058886.10	novel	2121	13	NA	NA	-489	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	38.2536121559155	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTGAATGTTGTCAAGC	NA	False	NA	-7	True	AATAAA	-24	NA	140908092	140877097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140877530_140881512_140881600_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140907191
ENSMUSG00000058886.10_3	chr7	-	5452	12	NIC	ENSMUSG00000058886.10	novel	2121	13	NA	NA	-470	0	intron_retention	FALSE	canonical	0	0	junction_11	38.2536121559155	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTGAATGTTGTCAAGC	NA	False	NA	-7	True	AATAAA	-24	NA	140908073	140877097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140877530_140881512_140881600_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140904354
ENSMUSG00000058886.10_5	chr7	-	2633	12	FSM	ENSMUSG00000058886.10	ENSMUST00000080553.9	2135	12	-503	5	-485	0	multi-exon	FALSE	canonical	0	0	junction_11	32.0206544912746	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTGAATGTTGTCAAGC	NA	False	NA	-7	True	AATAAA	-24	NA	140908088	140877097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140877530_140881512_140881603_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140907191
ENSMUSG00000058900.6_0	chr13	+	1709	4	NNC	ENSMUSG00000058900.6	novel	2591	4	NA	NA	-37	-841	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_1	9.80929264637478	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAGCTTCTAGAGTCTTG	NA	False	NA	NA	False	NA	NA	NA	67321208	67331267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_67321240_67324511_67324639_67325128_67325225_67329812
ENSMUSG00000058900.6_2	chr13	+	2596	4	FSM	ENSMUSG00000058900.6	ENSMUST00000021997.8	2591	4	-6	1	-6	-1	multi-exon	FALSE	canonical	1	3	junction_1	10.6144555520604	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACATTGTATCTCATCTT	NA	False	NA	NA	False	AATAAA	-24	NA	67321239	67332107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_67321318_67324511_67324639_67325128_67325225_67329812
ENSMUSG00000058900.6_3	chr13	+	1816	4	FSM	ENSMUSG00000058900.6	ENSMUST00000225334.2	397	4	-30	-1389	-13	-843	multi-exon	FALSE	canonical	3	9	junction_1	8.28653526310404	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAAGCTTCTAGAGTCT	NA	False	NA	NA	False	NA	NA	NA	67321232	67331265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_67321373_67324511_67324639_67325128_67325225_67329812
ENSMUSG00000058905.6_0	chr5	+	488	1	FSM	ENSMUSG00000058905.6	ENSMUST00000145209.2	414	1	-23	-51	-23	51	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-28	NA	133503938	133504426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_133503900_133504400
ENSMUSG00000058922.8_0	chr9	-	1390	1	FSM	ENSMUSG00000058922.8	ENSMUST00000168019.2	960	1	-80	-350	-80	350	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-19	NA	123519337	123517947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_123517900_123519300
ENSMUSG00000058927.7_0	chr19	+	525	1	FSM	ENSMUSG00000058927.7	ENSMUST00000073080.7	946	1	2	419	2	-419	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGTGGGTACGGTCTTT	NA	False	NA	NA	False	AGTAAA	-12	NA	24853051	24853576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_24853100_24853600
ENSMUSG00000058979.8_0	chr6	-	1919	8	FSM	ENSMUSG00000058979.8	ENSMUST00000075303.7	1928	8	8	1	-7	-1	multi-exon	FALSE	canonical	3	207	junction_3	16.3245151817249	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTCTTGTGAGGAT	NA	False	NA	34	True	ATTAAA	-20	NA	120508272	120486455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_120487424_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
ENSMUSG00000058979.8_1	chr6	-	2218	8	NNC	ENSMUSG00000058979.8	novel	1928	8	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	78.843425307921	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTCTTGTGAGGAT	NA	False	NA	34	True	ATTAAA	-20	NA	120508262	120486455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_120487424_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120507818
ENSMUSG00000058979.8_12	chr6	-	1881	8	NNC	ENSMUSG00000058979.8	novel	1928	8	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	77.5305074911595	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTCTTGTGAGGAT	NA	False	NA	34	True	ATTAAA	-20	NA	120508280	120486455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_120487378_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
ENSMUSG00000058997.9_0	chr14	+	3448	26	FSM	ENSMUSG00000058997.9	ENSMUST00000227255.2	3406	26	-42	0	20	0	multi-exon	FALSE	canonical	2	39	junction_16	9.45524193238862	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCAGTCTCCGTCCTTTTG	9366	False	NA	3	True	AATAAA	-19	NA	79086651	79302708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79219675_79219837_79221628_79221743_79231839_79232009_79232525_79232604_79246603_79246720_79256046_79256154_79258019_79258127_79263445_79263518_79275564_79275642_79294086_79294163_79296112_79296249_79297968_79298089_79299923_79300130_79302293
ENSMUSG00000058997.9_1	chr14	+	6153	45	FSM	ENSMUSG00000058997.9	ENSMUST00000040990.7	7054	45	148	753	8	-753	multi-exon	FALSE	canonical	2	24	junction_28	13.7905487757808	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGTTCCTGTCTGTGGT	9354	False	NA	31	True	AATAAA	-44	NA	79086639	79438997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79219675_79219837_79221628_79221743_79231839_79232009_79232525_79232604_79246603_79246720_79256046_79256154_79258019_79258127_79263445_79263518_79275564_79275642_79294086_79294163_79296112_79296249_79297968_79298089_79299923_79300130_79302293_79302446_79318552_79318662_79320212_79320352_79324059_79324260_79329730_79329842_79331165_79331231_79331637_79331764_79333111_79333222_79333824_79333980_79335673_79335870_79339675_79339758_79340931_79341137_79394511_79394621_79397404_79397562_79401543_79401653_79418180_79418307_79420412_79420572_79434851_79434951_79435661_79435901_79438537
ENSMUSG00000058997.9_23	chr14	+	2647	17	ISM	ENSMUSG00000058997.9	ENSMUST00000040990.7	7054	45	237627	755	-57242	-755	3prime_fragment	FALSE	canonical	3	24	junction_3	9.47694571051243	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACATGTTCCTGTCTGTG	NA	False	NA	29	True	AATAAA	-42	NA	79324118	79438995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_79324260_79329730_79329842_79331165_79331231_79331637_79331764_79333111_79333222_79333824_79333980_79335673_79335870_79339675_79339758_79340931_79341137_79394511_79394621_79397404_79397562_79401543_79401653_79418180_79418307_79420412_79420572_79434851_79434951_79435661_79435901_79438537
ENSMUSG00000058997.9_5	chr14	+	5724	34	ISM	ENSMUSG00000058997.9	ENSMUST00000040990.7	7054	45	145	104262	5	32780	5prime_fragment	FALSE	canonical	2	24	junction_28	14.2462277319776	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTTCTTACCCTAA	9351	False	NA	NA	False	AATAAA	-14	NA	79086636	79335488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79219675_79219837_79221628_79221743_79231839_79232009_79232525_79232604_79246603_79246720_79256046_79256154_79258019_79258127_79263445_79263518_79275564_79275642_79294086_79294163_79296112_79296249_79297968_79298089_79299923_79300130_79302293_79302446_79318552_79318662_79320212_79320352_79324059_79324260_79329730_79329842_79331165_79331231_79331637_79331764_79333111_79333222_79333824
ENSMUSG00000059005.14_0	chr2	+	1564	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111964.8	1654	11	17	73	-2	-73	multi-exon	FALSE	canonical	3	3912	junction_1	2045.95805431099	3464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTGTGTAGTTCAGTT	7492	False	NA	NA	False	NA	NA	NA	75489621	75496110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUSG00000059005.14_1	chr2	+	1864	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111962.8	5150	11	0	3286	0	0	multi-exon	FALSE	canonical	3	3726	junction_1	2097.55310779012	1997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7481	False	NA	NA	False	AAAAAG	-13	NA	75489610	75496465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUSG00000059013.13_0	chr2	+	2591	11	FSM	ENSMUSG00000059013.13	ENSMUST00000113242.5	3107	11	-2	518	-2	0	multi-exon	FALSE	canonical	1	2	junction_6	3.98622628559895	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGTCCCATGAGGCCT	1543	False	NA	NA	False	AATAAA	-15	NA	32617715	32645006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32617819_32627530_32627571_32634762_32634892_32635846_32636302_32637033_32637159_32639164_32639698_32640963_32641080_32641525_32641698_32642625_32642738_32643000_32643208_32644407
ENSMUSG00000059022.16_2	chr6	-	4893	38	FSM	ENSMUSG00000059022.16	ENSMUST00000101614.10	4885	38	-11	3	-9	-3	multi-exon	TRUE	canonical	0	0	junction_5	1.92367131343505	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTTCCTTGTATGTGTA	0	True	NA	NA	False	AATAAA	-15	NA	29507960	29482038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_29482462_29482632_29482940_29483928_29484094_29484613_29484716_29484809_29484922_29485001_29485175_29485416_29485560_29487179_29487280_29487495_29487576_29489031_29489153_29490064_29490148_29490393_29490568_29491663_29491758_29491843_29491927_29492053_29492145_29492383_29492470_29493187_29493365_29495756_29495928_29496159_29496349_29496429_29496524_29496618_29496702_29496800_29496975_29497551_29497646_29497720_29497828_29497903_29498057_29498275_29498358_29498427_29498514_29498785_29498880_29498955_29499036_29499123_29499218_29501200_29501290_29502288_29502383_29502583_29502667_29502776_29502874_29504231_29504309_29504397_29504567_29505636_29505801_29507855
ENSMUSG00000059040.6_0	chr18	+	1730	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	2	15	2	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	14606	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	48179715	48181445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_48179700_48181400
ENSMUSG00000059060.16_11	chr12	+	1523	11	NNC	ENSMUSG00000059060.16	novel	1759	8	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	21.4205508799377	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACCGGGGTCTCCAAA	8714	False	NA	1	True	AATAAA	-34	NA	79344125	79861146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_79344158_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994_79374181_79704597_79704695_79813844_79813949_79849963_79850043_79860715
ENSMUSG00000059060.16_12	chr12	+	1571	11	NNC	ENSMUSG00000059060.16	novel	1759	8	NA	NA	-10	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	23.9309423132479	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGAACCGGGGTCTCCA	8703	False	NA	-1	True	AATAAA	-32	NA	79344114	79861144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_79344197_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994_79374181_79704597_79704695_79813844_79813949_79849963_79850043_79860715
ENSMUSG00000059060.16_5	chr12	+	1622	11	NNC	ENSMUSG00000059060.16	novel	1858	11	NA	NA	-30	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	23.6400084602354	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAAGAACCGGGGTCTCC	8683	False	NA	-2	True	AATAAA	-31	NA	79344094	79861143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_79344197_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994_79374181_79704597_79704695_79813844_79813949_79849963_79850043_79860683
ENSMUSG00000059060.16_6	chr12	+	1583	11	NNC	ENSMUSG00000059060.16	novel	1858	11	NA	NA	-29	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	21.0513657514186	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGAACCGGGGTCTCCA	8684	False	NA	-1	True	AATAAA	-32	NA	79344095	79861144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_79344158_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994_79374181_79704597_79704695_79813844_79813949_79849963_79850043_79860683
ENSMUSG00000059070.17_0	chr7	+	638	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	33	8	5	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	1890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGGTCCTCTGTGTTCA	5955	False	NA	8	True	AATAAA	-15	NA	45367527	45370251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ENSMUSG00000059070.17_14	chr7	+	1049	6	FSM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	-25	3	20	2	multi-exon	FALSE	canonical	3	220	junction_1	3241.25016621673	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGATGGTCCTCTGTGTT	5983	False	NA	6	True	AATAAA	-13	NA	45367555	45370249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45368005_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ENSMUSG00000059070.17_17	chr7	+	603	5	ISM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	1095	1	-10	0	3prime_fragment	FALSE	canonical	3	7563	junction_4	515.404877256706	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGGTCCTCTGTGTTCA	7103	False	NA	8	True	AATAAA	-15	NA	45368675	45370251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ENSMUSG00000059119.10_0	chr7	-	2236	15	FSM	ENSMUSG00000059119.10	ENSMUST00000208190.2	2259	15	14	9	0	-4	multi-exon	FALSE	canonical	3	471	junction_1	167.71624785905	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACAAACTGAGATTGGT	NA	False	NA	-14	True	ATTAAA	-7	NA	143102829	143067328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
ENSMUSG00000059119.10_1	chr7	-	2268	16	FSM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	4	13	4	-4	multi-exon	FALSE	canonical	3	502	junction_2	192.287354411741	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACAAACTGAGATTGGT	NA	False	NA	-14	True	ATTAAA	-7	NA	143102825	143067328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
ENSMUSG00000059136.5_0	chr7	+	184	1	ISM	ENSMUSG00000059136.5	ENSMUST00000218865.2	11486	3	13512	4955	6153	2584	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGAATCCTGTCTTGGTT	6037	False	NA	NA	False	NA	NA	NA	140253354	140253538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140253400_140253500
ENSMUSG00000059142.17_0	chr17	-	3074	1	ISM	ENSMUSG00000059142.17	ENSMUST00000160457.10	6618	6	15857	1507	10442	-722	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACGTGTCCCAGGTGTGCA	NA	False	NA	NA	False	AATATA	-15	NA	23070251	23067177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_23067200_23070300
ENSMUSG00000059142.17_15	chr17	-	3983	6	FSM	ENSMUSG00000059142.17	ENSMUST00000160457.10	6618	6	31	2604	2	-271	multi-exon	FALSE	canonical	1	1	junction_3	13.6528385327008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAGTTCTTATCATTATG	NA	False	NA	NA	False	NA	NA	NA	23086077	23068274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23071741_23076223_23076351_23080479_23080536_23080705_23080827_23084220_23084311_23085954
ENSMUSG00000059142.17_3	chr17	-	4989	5	FSM	ENSMUSG00000059142.17	ENSMUST00000088696.13	5683	5	-29	723	0	-723	multi-exon	FALSE	canonical	2	11	junction_3	9.36416040016402	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACGTGTCCCAGGTGTGC	NA	False	NA	NA	False	AATATA	-14	NA	23086108	23067178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23071741_23076223_23076351_23080479_23080536_23084220_23084311_23085954
ENSMUSG00000059142.17_7	chr17	-	4418	3	NIC	ENSMUSG00000059142.17	novel	5683	5	NA	NA	5	4819	intron_retention	FALSE	canonical	3	21	junction_1	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATGTTTTAAGTTTTT	NA	False	NA	NA	False	TTTAAA	-43	NA	23086074	23075883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_23076351_23080479_23084311_23085954
ENSMUSG00000059146.13_1	chr7	-	3601	1	ISM	ENSMUSG00000059146.13	ENSMUST00000039431.14	19703	17	387259	11590	1594	4831	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCATCTGAGTTTCTCAA	NA	False	NA	NA	False	ATTAAA	-12	NA	77840897	77837296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_77837300_77840900
ENSMUSG00000059146.13_11	chr7	-	1870	1	ISM	ENSMUSG00000059146.13	ENSMUST00000039438.9	3977	14	275420	3	-40675	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTGCATCAGACCTC	NA	False	NA	NA	False	AATAAA	-18	NA	77952310	77950440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_77950400_77952300
ENSMUSG00000059146.13_12	chr7	-	3626	14	NIC	ENSMUSG00000059146.13	novel	3977	14	NA	NA	-6835	-7	combination_of_known_splicesites	FALSE	canonical	1	3	junction_13	10.4036861924287	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAATGACTGCATCAGA	NA	False	NA	NA	False	AATAAA	-14	NA	78235281	77950444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_77952496_77954039_77954175_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78235178
ENSMUSG00000059146.13_2	chr7	-	2717	17	NIC	ENSMUSG00000059146.13	novel	19703	17	NA	NA	-6820	220	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	15.5652607992928	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAAGCTGTGGCCCGTGCT	NA	False	NA	NA	False	AATGAA	-11	NA	78235266	77841907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_77842493_77848540_77848700_77896902_77897147_77900448_77900622_77910031_77910163_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78235178
ENSMUSG00000059146.13_20	chr7	-	4238	15	NIC	ENSMUSG00000059146.13	novel	3977	14	NA	NA	9	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	10.6466915432132	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAATGACTGCATCAGA	NA	False	NA	NA	False	AATAAA	-14	NA	78228142	77950444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_77952496_77954039_77954175_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78227283_78227855_78227998
ENSMUSG00000059146.13_23	chr7	-	4239	13	NIC	ENSMUSG00000059146.13	novel	3977	14	NA	NA	15	-9	intron_retention	FALSE	canonical	2	6	junction_1	10.1680326951131	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATGAAATGACTGCATCA	NA	False	NA	NA	False	AATAAA	-12	NA	78228136	77950446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_77952496_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78227283
ENSMUSG00000059146.13_3	chr7	-	3536	18	FSM	ENSMUSG00000059146.13	ENSMUST00000193002.6	2678	18	-633	-225	-14	198	multi-exon	FALSE	canonical	1	1	junction_2	15.7264681129603	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAAATGAAATTCCCTT	NA	False	NA	NA	False	AAAACA	-42	NA	78228170	77841929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_77842493_77848540_77848700_77853850_77853893_77896902_77897147_77900448_77900622_77910031_77910163_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78227283
ENSMUSG00000059146.13_5	chr7	-	3447	17	FSM	ENSMUSG00000059146.13	ENSMUST00000039431.14	19703	17	54	16202	49	219	multi-exon	FALSE	canonical	1	2	junction_5	14.7690554877419	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTAAGCTGTGGCCCGTGC	NA	False	NA	NA	False	AATGAA	-10	NA	78228102	77841908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_77842493_77848540_77848700_77896902_77897147_77900448_77900622_77910031_77910163_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78227283
ENSMUSG00000059146.13_7	chr7	-	4224	14	FSM	ENSMUSG00000059146.13	ENSMUST00000039438.9	3977	14	-250	3	171	-3	multi-exon	FALSE	canonical	3	25	junction_10	6.48804088737217	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTGCATCAGACCTC	NA	False	NA	NA	False	AATAAA	-18	NA	78227980	77950440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_77952496_77954039_77954175_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78227283
ENSMUSG00000059149.18_0	chr1	-	2614	5	ISM	ENSMUSG00000059149.18	ENSMUST00000159038.8	1957	10	15442	-1723	1708	-6	3prime_fragment	FALSE	canonical	1	3	junction_3	2.1650635094611	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTAGTAAGTGTGTTAT	NA	False	NA	-6	True	AATAAA	-8	NA	131980207	131964527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_131966712_131968277_131968399_131969595_131969667_131974043_131974192_131980117
ENSMUSG00000059149.18_2	chr1	-	3728	10	FSM	ENSMUSG00000059149.18	ENSMUST00000159038.8	1957	10	-42	-1729	10	0	multi-exon	FALSE	canonical	0	0	junction_6	2.87174399629335	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAGTGTGTTATCCATCT	NA	False	NA	0	True	AATAAA	-14	NA	131995691	131964521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_131966712_131968277_131968399_131969595_131969667_131974043_131974192_131980117_131980292_131981286_131981403_131981796_131981963_131985453_131985706_131986897_131987097_131995400
ENSMUSG00000059149.18_4	chr1	-	2606	4	ISM	ENSMUSG00000059149.18	ENSMUST00000046658.10	3252	7	21403	1	29	-1	3prime_fragment	FALSE	canonical	1	3	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAAGTGTGTTATCCATC	NA	False	NA	-1	True	AATAAA	-13	NA	131974268	131964522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_131966712_131968277_131968399_131969595_131969667_131974043
ENSMUSG00000059149.18_5	chr1	-	2236	2	ISM	ENSMUSG00000059149.18	ENSMUST00000189227.2	238	3	1331	-2034	1331	0	3prime_fragment	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAGTGTGTTATCCATCT	NA	False	NA	0	True	AATAAA	-14	NA	131968323	131964521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_131966712_131968277
ENSMUSG00000059159.7_0	chr6	-	342	1	FSM	ENSMUSG00000059159.7	ENSMUST00000118230.2	213	1	-50	-79	-50	79	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAACATCAAGCCGGGTG	NA	False	NA	NA	False	NA	NA	NA	52323977	52323635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52323600_52324000
ENSMUSG00000059182.9_0	chr6	-	1621	13	FSM	ENSMUSG00000059182.9	ENSMUST00000204778.3	3382	13	17	1744	0	0	multi-exon	FALSE	canonical	3	457	junction_9	27.4919180043073	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGACTTAGCCTGGTA	845	False	NA	-7	True	AATAAA	-18	NA	51989512	51836145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
ENSMUSG00000059182.9_14	chr6	-	2988	2	ISM	ENSMUSG00000059182.9	ENSMUST00000205174.2	661	3	9347	63	9347	-1	3prime_fragment	FALSE	canonical	3	532	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGATGACTTAGCCTGGT	9116	False	NA	-8	True	AATAAA	-17	NA	51839562	51836146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_51836551_51836978
ENSMUSG00000059183.13_0	chr9	+	1381	9	FSM	ENSMUSG00000059183.13	ENSMUST00000074792.7	2042	9	21	640	15	-3	multi-exon	FALSE	canonical	3	114	junction_5	22.1472345903501	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGAGCTTGTATCCTTTG	NA	False	NA	24	True	AATAAA	-25	NA	65343084	65359696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65347731_65348894_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
ENSMUSG00000059183.13_1	chr9	+	917	4	ISM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	15	11693	15	-6553	5prime_fragment	FALSE	canonical	3	143	junction_2	18.6607133363712	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGAGAGATCAAGACTGG	NA	False	NA	NA	False	NA	NA	NA	65343084	65348006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627
ENSMUSG00000059183.13_2	chr9	+	2543	8	FSM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	16	4	16	-4	multi-exon	FALSE	canonical	3	114	junction_4	22.2545569743019	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGAGCTTGTATCCTTT	NA	False	NA	23	True	AATAAA	-24	NA	65343085	65359695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
ENSMUSG00000059183.13_6	chr9	+	1755	2	ISM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	11	13884	11	-8744	5prime_fragment	FALSE	canonical	3	184	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATATACTCATTTTATTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	65343080	65345815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_65343290_65344269
ENSMUSG00000059208.16_1	chr17	-	2452	15	NIC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_12	499.910221531663	935	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5767	False	NA	-8	True	AATAAA	-13	NA	33904366	33865212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889054_33889108_33896247_33896415_33904240
ENSMUSG00000059208.16_18	chr17	-	901	3	ISM	ENSMUSG00000059208.16	ENSMUST00000087582.13	2370	17	35397	0	-335	0	3prime_fragment	FALSE	canonical	3	1945	junction_2	124.5	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	NA	False	NA	-8	True	AATAAA	-13	NA	33868996	33865212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_33865634_33867786_33867839_33868568
ENSMUSG00000059208.16_2	chr17	-	2335	16	NIC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	491.668786436108	1911	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5767	False	NA	-8	True	AATAAA	-13	NA	33904366	33865212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889054_33889108_33896247_33896415_33904240
ENSMUSG00000059213.8_0	chr15	-	3112	1	ISM	ENSMUSG00000059213.8	ENSMUST00000075444.8	3745	2	1029	8	1029	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGCAGCTCTGGAGTCT	NA	False	NA	-8	True	NA	NA	NA	98704777	98701665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98701700_98704800
ENSMUSG00000059229.8_0	chr12	+	3123	4	Genic_Genomic	ENSMUSG00000059229.8	novel	1983	1	NA	NA	-50	9532	multi-exon	FALSE	canonical	3	13	junction_2	22.1710521977545	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACATACTGGAGA	NA	False	NA	NA	False	NA	NA	NA	19540258	19551823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_19540659_19547562_19547690_19547891_19547953_19549288
ENSMUSG00000059248.14_1	chr11	+	3577	12	FSM	ENSMUSG00000059248.14	ENSMUST00000093907.11	3616	12	18	21	18	-4	multi-exon	FALSE	canonical	3	27	junction_1	260.952736292441	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAAACTTTTTTTCTG	3716	False	NA	82	True	AATAAA	-7	NA	117090504	117253130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117090600_117109700_117109758_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUSG00000059248.14_18	chr11	+	2890	10	NIC	ENSMUSG00000059248.14	novel	647	4	NA	NA	14	-4	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	178.114819397177	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAAACTTTTTTTCTG	NA	False	NA	82	True	AATAAA	-7	NA	117198993	117253130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_117199098_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUSG00000059248.14_30	chr11	+	2912	10	FSM	ENSMUSG00000059248.14	ENSMUST00000100193.8	2924	10	8	4	8	-4	multi-exon	FALSE	canonical	3	18	junction_1	196.831569283656	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAAACTTTTTTTCTG	NA	False	NA	82	True	AATAAA	-7	NA	117222553	117253130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117222680_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUSG00000059248.14_33	chr11	+	2834	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	78	20	-5	-4	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAAACTTTTTTTCTG	NA	False	NA	82	True	AATAAA	-7	NA	117223248	117253130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUSG00000059248.14_45	chr11	+	2785	9	ISM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	19085	20	-1750	-4	3prime_fragment	FALSE	canonical	3	610	junction_8	24.1062102994228	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAAACTTTTTTTCTG	579	False	NA	82	True	AATAAA	-7	NA	117242255	117253130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUSG00000059248.14_59	chr11	+	1376	1	ISM	ENSMUSG00000059248.14	ENSMUST00000093907.11	3616	12	161268	21	1569	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAAACTTTTTTTCTG	2657	False	NA	82	True	AATAAA	-7	NA	117251754	117253130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_117251800_117253100
ENSMUSG00000059248.14_6	chr11	+	3631	11	FSM	ENSMUSG00000059248.14	ENSMUST00000019038.15	3784	11	144	9	144	-4	multi-exon	FALSE	canonical	3	88	junction_1	218.744622791053	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAAACTTTTTTTCTG	840	False	NA	82	True	AATAAA	-7	NA	117157215	117253130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_117157422_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUSG00000059263.10_0	chr7	+	5543	28	FSM	ENSMUSG00000059263.10	ENSMUST00000106653.4	5540	28	-17	14	-17	-14	multi-exon	FALSE	canonical	3	255	junction_11	29.763171284045	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTTCATGTTGCTGTG	NA	False	NA	-10	True	AATAAA	-2	NA	111622693	111710577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_111622954_111652423_111652628_111654048_111654163_111655681_111655821_111658178_111658276_111662452_111662599_111663571_111663652_111666291_111666442_111673678_111673775_111673863_111674017_111676998_111677167_111681636_111681769_111682294_111682372_111683063_111683120_111685201_111685315_111686207_111686313_111686972_111687181_111688731_111688848_111690611_111690732_111691912_111692694_111700944_111701121_111701645_111701727_111703156_111703273_111703556_111703676_111705985_111706117_111707642_111707691_111707780_111707912_111709151
ENSMUSG00000059263.10_1	chr7	+	5552	29	FSM	ENSMUSG00000059263.10	ENSMUST00000215510.2	4697	29	-19	-836	-17	-65	multi-exon	FALSE	canonical	3	115	junction_12	65.7666231799216	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTTTTCATGCAAGAT	NA	False	NA	-61	True	AATAAA	-11	NA	111622693	111710526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_111622954_111652423_111652628_111654048_111654163_111655681_111655821_111658178_111658276_111662452_111662599_111663571_111663652_111666291_111666442_111673678_111673775_111673863_111674017_111676998_111677167_111679378_111679439_111681636_111681769_111682294_111682372_111683063_111683120_111685201_111685315_111686207_111686313_111686972_111687181_111688731_111688848_111690611_111690732_111691912_111692694_111700944_111701121_111701645_111701727_111703156_111703273_111703556_111703676_111705985_111706117_111707642_111707691_111707780_111707912_111709151
ENSMUSG00000059273.10_0	chr7	+	6523	13	NIC	ENSMUSG00000059273.10	novel	333	2	NA	NA	-706	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	29.3317944672103	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGTGAGTCTAGT	3775	False	NA	12	True	ATTAAA	-16	NA	16134128	16171615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_16134967_16150697_16150918_16151215_16151327_16154082_16154306_16155280_16155433_16156113_16156211_16156302_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16167945
ENSMUSG00000059273.10_1	chr7	+	7351	14	NIC	ENSMUSG00000059273.10	novel	333	2	NA	NA	-1285	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	34.2757699018835	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGTGAGTCTAGT	3196	False	NA	12	True	ATTAAA	-16	NA	16133549	16171615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_16134967_16150697_16150918_16151215_16151327_16154082_16154306_16155280_16155433_16156113_16156211_16156302_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16166698_16166948_16167945
ENSMUSG00000059273.10_11	chr7	+	5797	13	NIC	ENSMUSG00000059273.10	novel	6039	14	NA	NA	-12	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	31.572997429238	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGTGAGTCTAGT	4766	False	NA	12	True	ATTAAA	-16	NA	16135119	16171615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_16135232_16150697_16150918_16151215_16151327_16154082_16154306_16155280_16155433_16156113_16156211_16156302_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16167945
ENSMUSG00000059273.10_12	chr7	+	6062	14	FSM	ENSMUSG00000059273.10	ENSMUST00000098789.5	6039	14	-28	5	-28	-5	multi-exon	FALSE	canonical	0	0	junction_9	35.8403758961691	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGTGAGTCTAGT	4750	False	NA	12	True	ATTAAA	-16	NA	16135103	16171615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16135232_16150697_16150918_16151215_16151327_16154082_16154306_16155280_16155433_16156113_16156211_16156302_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16166698_16166948_16167945
ENSMUSG00000059273.10_14	chr7	+	5644	12	ISM	ENSMUSG00000059273.10	ENSMUST00000209289.2	5853	14	15607	6	1969	-5	3prime_fragment	FALSE	canonical	0	0	junction_8	28.3012133606662	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGTGAGTCTAGT	NA	False	NA	12	True	ATTAAA	-16	NA	16150738	16171615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_16150918_16151215_16151327_16154082_16154306_16155280_16155433_16156113_16156211_16156302_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16167945
ENSMUSG00000059273.10_15	chr7	+	5790	13	ISM	ENSMUSG00000059273.10	ENSMUST00000098789.5	6039	14	15710	5	2072	-5	3prime_fragment	FALSE	canonical	0	0	junction_8	34.4128327162347	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGTGAGTCTAGT	NA	False	NA	12	True	ATTAAA	-16	NA	16150841	16171615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_16150918_16151215_16151327_16154082_16154306_16155280_16155433_16156113_16156211_16156302_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16166698_16166948_16167945
ENSMUSG00000059273.10_18	chr7	+	5061	9	ISM	ENSMUSG00000059273.10	ENSMUST00000209289.2	5853	14	20219	6	6581	-5	3prime_fragment	FALSE	canonical	0	0	junction_5	32.8555075291799	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGTGAGTCTAGT	NA	False	NA	12	True	ATTAAA	-16	NA	16155350	16171615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_16155433_16156113_16156211_16156302_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16167945
ENSMUSG00000059273.10_22	chr7	+	5058	8	ISM	ENSMUSG00000059273.10	ENSMUST00000098789.5	6039	14	21244	5	7606	-5	3prime_fragment	FALSE	canonical	0	0	junction_3	39.2999974035415	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGTGAGTCTAGT	NA	False	NA	12	True	ATTAAA	-16	NA	16156375	16171615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16166698_16166948_16167945
ENSMUSG00000059273.10_23	chr7	+	4809	7	ISM	ENSMUSG00000059273.10	ENSMUST00000209289.2	5853	14	21244	6	7606	-5	3prime_fragment	FALSE	canonical	0	0	junction_3	33.9803864996658	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGTGAGTCTAGT	NA	False	NA	12	True	ATTAAA	-16	NA	16156375	16171615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16167945
ENSMUSG00000059273.10_31	chr7	+	3979	2	ISM	ENSMUSG00000059273.10	ENSMUST00000209289.2	5853	14	28395	6	14757	-5	3prime_fragment	FALSE	canonical	3	40	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGTGAGTCTAGT	3324	False	NA	12	True	ATTAAA	-16	NA	16163526	16171615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_16163836_16167945
ENSMUSG00000059273.10_34	chr7	+	2482	1	ISM	ENSMUSG00000059273.10	ENSMUST00000098789.5	6039	14	34002	5	20364	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGTGAGTCTAGT	8931	False	NA	12	True	ATTAAA	-16	NA	16169133	16171615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_16169100_16171600
ENSMUSG00000059278.10_0	chr11	+	501	3	FSM	ENSMUSG00000059278.10	ENSMUST00000144531.2	671	3	164	6	-3	-6	multi-exon	FALSE	canonical	3	948	junction_1	166	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCCTGTGTCTGTGT	NA	False	NA	11	True	ATTAAA	-11	NA	69286636	69287500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69286799_69287002_69287187_69287345
ENSMUSG00000059278.10_1	chr11	+	492	3	NNC	ENSMUSG00000059278.10	novel	671	3	NA	NA	2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	640	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAAGTGGCCTGTGTCTG	NA	False	NA	8	True	ATTAAA	-8	NA	69286641	69287497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_69286798_69287002_69287187_69287345
ENSMUSG00000059278.10_6	chr11	+	386	2	FSM	ENSMUSG00000059278.10	ENSMUST00000124932.2	404	2	12	6	12	-6	multi-exon	FALSE	canonical	3	1280	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCCTGTGTCTGTGT	NA	False	NA	11	True	ATTAAA	-11	NA	69286955	69287500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69287187_69287345
ENSMUSG00000059288.15_0	chr13	+	3255	8	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2855	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	86.1488981534948	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGGGAGTGTTTCT	NA	False	NA	13	True	AATAAA	-43	NA	35922440	36058041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_35922622_35974083_35974159_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ENSMUSG00000059288.15_1	chr13	+	3180	7	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2855	0	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_1	63.2334739060114	182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGGGAGTGTTTCT	NA	False	NA	13	True	AATAAA	-43	NA	35922440	36058041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_35922622_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ENSMUSG00000059288.15_15	chr13	+	2623	6	ISM	ENSMUSG00000059288.15	ENSMUST00000163595.3	3575	7	74972	0	53473	0	3prime_fragment	FALSE	canonical	3	213	junction_3	27.0510628257006	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGGGAGTGTTTCT	NA	False	NA	13	True	AATAAA	-43	NA	36000267	36058041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ENSMUSG00000059288.15_16	chr13	+	2401	6	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	90751	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	80.650852444348	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGGGAGTGTTTCT	NA	False	NA	13	True	AATAAA	-43	NA	36037545	36058041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_36037615_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ENSMUSG00000059288.15_4	chr13	+	3443	7	FSM	ENSMUSG00000059288.15	ENSMUST00000163595.3	3575	7	132	0	132	0	multi-exon	FALSE	canonical	3	72	junction_1	71.2031522398334	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGGGAGTGTTTCT	NA	False	NA	13	True	AATAAA	-43	NA	35925427	36058041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_35925872_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ENSMUSG00000059291.16_0	chr4	-	590	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	20	223	20	-7	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	1771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCATGTTACAGTTGTG	NA	False	NA	-11	True	AATAAA	-33	NA	135780684	135777264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
ENSMUSG00000059291.16_1	chr4	-	565	5	FSM	ENSMUSG00000059291.16	ENSMUST00000125726.8	807	5	278	-36	-2	-7	multi-exon	FALSE	canonical	3	383	junction_1	4361.44284469027	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCATGTTACAGTTGTG	NA	False	NA	-11	True	AATAAA	-33	NA	135780029	135777264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877
ENSMUSG00000059303.7_0	chr9	+	4161	1	FSM	ENSMUSG00000059303.7	ENSMUST00000074986.7	955	1	-166	-3040	-166	-987	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTTCTTTCCTTATTTG	NA	False	NA	NA	False	ATTAAA	-18	NA	19032086	19036247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_19032100_19036200
ENSMUSG00000059316.3_0	chr2	+	2943	13	FSM	ENSMUSG00000059316.3	ENSMUST00000080065.3	4054	13	44	1067	44	-1067	multi-exon	FALSE	canonical	3	138	junction_1	13.3562303397661	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGACAGCCTGGCTCCT	NA	False	NA	28	True	AATAAA	-20	NA	29692689	29706467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29692973_29694171_29694339_29695627_29696023_29697367_29697527_29699673_29699744_29699847_29699940_29700872_29700983_29701197_29701408_29701580_29701708_29702276_29702415_29702563_29702729_29702799_29702947_29705587
ENSMUSG00000059316.3_16	chr2	+	2630	12	ISM	ENSMUSG00000059316.3	ENSMUST00000080065.3	4054	13	1556	1067	1556	-1067	3prime_fragment	FALSE	canonical	3	148	junction_3	11.6569420312817	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGACAGCCTGGCTCCT	NA	False	NA	28	True	AATAAA	-20	NA	29694201	29706467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_29694339_29695627_29696023_29697367_29697527_29699673_29699744_29699847_29699940_29700872_29700983_29701197_29701408_29701580_29701708_29702276_29702415_29702563_29702729_29702799_29702947_29705587
ENSMUSG00000059323.15_23	chr15	-	3504	21	ISM	ENSMUSG00000059323.15	ENSMUST00000168185.8	4235	26	1818	0	139	0	3prime_fragment	FALSE	canonical	3	182	junction_12	23.7201918204723	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTCAGCTCTCTGCG	-10	True	NA	-1	True	AATAAA	-16	NA	76522340	76510437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241
ENSMUSG00000059323.15_6	chr15	-	4201	26	FSM	ENSMUSG00000059323.15	ENSMUST00000168185.8	4235	26	32	2	3	-1	multi-exon	FALSE	canonical	3	178	junction_21	25.6881606970994	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGTCAGCTCTCTG	NA	False	NA	-3	True	AATAAA	-14	NA	76524126	76510439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522414_76522671_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
ENSMUSG00000059325.15_0	chr5	-	1090	3	FSM	ENSMUSG00000059325.15	ENSMUST00000113453.9	1113	3	19	4	-5	-4	multi-exon	FALSE	canonical	3	24	junction_1	1.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCATGGAGTCTTTTT	3162	False	NA	-7	True	ATTAAA	-16	NA	77243105	77234838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_77235664_77242712_77242870_77242997
ENSMUSG00000059326.8_1	chr19	-	1868	12	FSM	ENSMUSG00000059326.8	ENSMUST00000076046.7	1849	12	-19	0	-8	0	multi-exon	FALSE	canonical	3	33	junction_11	40.804310256849	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9800	False	NA	-2	True	NA	NA	NA	61216875	61212839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214260_61214365_61214494_61214652_61214823_61214962_61215093_61215243_61215365_61215467_61215623_61215709_61215804_61216776
ENSMUSG00000059326.8_14	chr19	-	2277	1	NIC	ENSMUSG00000059326.8	novel	2277	5	NA	NA	5	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9876	False	NA	-2	True	NA	NA	NA	61215116	61212839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_61212800_61215100
ENSMUSG00000059326.8_19	chr19	-	2027	3	NIC	ENSMUSG00000059326.8	novel	1849	12	NA	NA	16	0	intron_retention	FALSE	canonical	3	136	junction_1	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9887	False	NA	-2	True	NA	NA	NA	61215105	61212839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_61213472_61213570_61214823_61214962
ENSMUSG00000059326.8_3	chr19	-	1413	8	ISM	ENSMUSG00000059326.8	ENSMUST00000237386.2	1771	11	708	-9	15	0	3prime_fragment	FALSE	canonical	3	89	junction_6	20.6861878398834	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9886	False	NA	-2	True	NA	NA	NA	61215106	61212839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214260_61214365_61214494_61214652_61214823_61214962
ENSMUSG00000059326.8_30	chr19	-	1717	10	ISM	ENSMUSG00000059326.8	ENSMUST00000237386.2	1771	11	149	-8	9	-1	3prime_fragment	FALSE	canonical	3	34	junction_8	34.9691221819027	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGCTTTTGTTTTCTTTT	9955	False	NA	-3	True	NA	NA	NA	61215665	61212840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214260_61214365_61214494_61214652_61214823_61214962_61215093_61215243_61215365_61215467
ENSMUSG00000059326.8_9	chr19	-	1518	7	NIC	ENSMUSG00000059326.8	novel	1849	12	NA	NA	16	0	intron_retention	FALSE	canonical	3	89	junction_5	19.9728983041187	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9887	False	NA	-2	True	NA	NA	NA	61215105	61212839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214494_61214652_61214823_61214962
ENSMUSG00000059327.10_2	chrX	+	4198	5	NIC	ENSMUSG00000059327.10	novel	5105	9	NA	NA	2495	-1	combination_of_known_junctions	FALSE	canonical	2	11	junction_4	7.21110255092798	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCTTGACATTATCTTGA	NA	False	NA	3	True	AATAAA	-14	NA	99433355	99444364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_99433488_99434946_99434982_99435938_99435991_99438624_99438750_99440510
ENSMUSG00000059327.10_4	chrX	+	1899	1	ISM	ENSMUSG00000059327.10	ENSMUST00000113781.8	4915	7	423252	3	11603	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATCCTTGACATTATCTT	NA	False	NA	1	True	AATAAA	-12	NA	99442463	99444362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_99442500_99444400
ENSMUSG00000059327.10_5	chrX	+	4946	8	NIC	ENSMUSG00000059327.10	novel	4955	8	NA	NA	8	-3	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	9.29998902786274	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATCCTTGACATTATCTT	NA	False	NA	1	True	AATAAA	-12	NA	99019219	99444362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_99019783_99353596_99353706_99425060_99425085_99433307_99433488_99434946_99434982_99435938_99435991_99438624_99438756_99440510
ENSMUSG00000059327.10_6	chrX	+	4919	8	NIC	ENSMUSG00000059327.10	novel	5105	9	NA	NA	29	-3	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	9.06889728463079	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATCCTTGACATTATCTT	NA	False	NA	1	True	AATAAA	-12	NA	99019240	99444362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_99019783_99353596_99353706_99425060_99425085_99433307_99433488_99434946_99434982_99435938_99435991_99438624_99438750_99440510
ENSMUSG00000059327.10_7	chrX	+	4916	8	NIC	ENSMUSG00000059327.10	novel	4955	8	NA	NA	32	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	10.3292728471573	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTGACATTATCTTGAG	NA	False	NA	4	True	AATAAA	-15	NA	99019243	99444365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_99019783_99353596_99353706_99425060_99425085_99433307_99433488_99434946_99434982_99435938_99435991_99438633_99438756_99440510
ENSMUSG00000059334.7_0	chrX	-	2623	2	Genic_Genomic	ENSMUSG00000059334.7	novel	2347	1	NA	NA	-10	1362	multi-exon	FALSE	canonical	2	8	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTTGCAGTTTCATATA	NA	False	NA	NA	False	AATAAA	-20	NA	52778371	52774652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_52774921_52776016
ENSMUSG00000059355.14_1	chr8	+	682	4	FSM	ENSMUSG00000059355.14	ENSMUST00000079764.14	922	4	230	10	-3	-3	multi-exon	FALSE	canonical	3	586	junction_1	13.7679176187089	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTGCACTGTTGCTTC	NA	False	NA	26	True	TATAAA	-15	NA	85807598	85808958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808574
ENSMUSG00000059355.14_3	chr8	+	791	3	FSM	ENSMUSG00000059355.14	ENSMUST00000148592.2	798	3	-3	10	-3	-3	multi-exon	FALSE	canonical	3	590	junction_2	13.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTGCACTGTTGCTTC	NA	False	NA	26	True	TATAAA	-15	NA	85807598	85808958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85807908_85808405_85808504_85808574
ENSMUSG00000059361.7_2	chr2	-	1427	3	FSM	ENSMUSG00000059361.7	ENSMUST00000079278.5	1455	3	18	10	18	-10	multi-exon	FALSE	canonical	1	2	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCATACCACCAGCGTGGC	8707	False	NA	-12	True	AATAAA	-7	NA	152218540	152210684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_152211844_152216015_152216211_152218467
ENSMUSG00000059363.11_0	chr19	-	791	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	19	304	-18	105	multi-exon	FALSE	canonical	3	359	junction_4	29.2018835008977	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGTCCCCGGACCTGGC	NA	False	NA	-8	True	AAAAAG	-14	NA	24257950	24239120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
ENSMUSG00000059395.5_0	chr13	-	1388	1	FSM	ENSMUSG00000059395.5	ENSMUST00000068235.6	1463	1	23	52	23	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAATGACTAAAAAGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	21652656	21651268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_21651300_21652700
ENSMUSG00000059409.10_3	chr17	-	2885	15	FSM	ENSMUSG00000059409.10	ENSMUST00000002839.9	2926	15	38	3	38	-3	multi-exon	FALSE	canonical	3	369	junction_9	37.0099958918988	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGTCTGAGTCGCCTTGG	1147	False	NA	NA	False	AATAAA	-12	NA	47015890	46993919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011073_47015758
ENSMUSG00000059409.10_4	chr17	-	2885	15	FSM	ENSMUSG00000059409.10	ENSMUST00000233988.2	3038	15	150	3	41	-3	multi-exon	FALSE	canonical	3	79	junction_14	104.207504919908	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGTCTGAGTCGCCTTGG	1150	False	NA	NA	False	AATAAA	-12	NA	47015887	46993919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011076_47015758
ENSMUSG00000059409.10_8	chr17	-	3019	14	NIC	ENSMUSG00000059409.10	novel	2926	15	NA	NA	38	-3	intron_retention	FALSE	canonical	3	369	junction_8	38.3709702893574	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGTCTGAGTCGCCTTGG	1147	False	NA	NA	False	AATAAA	-12	NA	47015890	46993919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011073_47015758
ENSMUSG00000059412.8_0	chr9	+	582	6	FSM	ENSMUSG00000059412.8	ENSMUST00000041005.6	632	6	45	5	-31	-4	multi-exon	FALSE	canonical	3	206	junction_5	6.73498329619309	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCATCCGTGAGTGCTTAT	NA	False	NA	29	True	AATGAA	-41	NA	45314480	45321571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_45314599_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
ENSMUSG00000059412.8_3	chr9	+	753	5	ISM	ENSMUSG00000059412.8	ENSMUST00000217549.2	258	6	649	-264	649	0	3prime_fragment	FALSE	canonical	3	206	junction_4	7.3143694191639	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCGTGAGTGCTTATCATT	39	False	NA	33	True	AATGAA	-45	NA	45319118	45321575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
ENSMUSG00000059412.8_4	chr9	+	435	4	ISM	ENSMUSG00000059412.8	ENSMUST00000217549.2	258	6	1119	-261	1119	-3	3prime_fragment	FALSE	canonical	3	206	junction_3	6.54896090146283	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATCCGTGAGTGCTTATC	509	False	NA	30	True	AATGAA	-42	NA	45319588	45321572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_45319673_45320810_45320848_45321000_45321032_45321289
ENSMUSG00000059422.6_0	chr9	-	1934	1	FSM	ENSMUSG00000059422.6	ENSMUST00000182917.2	1201	1	-74	-659	-74	659	mono-exon	FALSE	NA	NA	NA	NA	NA	393	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACATAATTTCGAATTA	NA	False	NA	NA	False	AATAAA	-14	NA	78729194	78727260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_78727300_78729200
ENSMUSG00000059423.14_7	chr4	-	512	4	FSM	ENSMUSG00000059423.14	ENSMUST00000105718.8	4238	4	-44	3770	-44	-9	multi-exon	FALSE	canonical	3	42	junction_2	6.37704215656966	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAACCTTATGAATGTAAT	3897	False	NA	NA	False	NA	NA	NA	147932867	147911212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_147911404_147912866_147912928_147913126_147913254_147932734
ENSMUSG00000059436.14_1	chr12	-	1952	5	FSM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	-15	5	1	0	multi-exon	FALSE	canonical	3	16	junction_4	22.1697992773954	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCGGTAGTAGTGTCTTC	NA	False	NA	-5	True	AATAAA	-15	NA	77008974	76984047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008036_77008064_77008763
ENSMUSG00000059436.14_12	chr12	-	571	1	ISM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	24341	5	2150	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCGGTAGTAGTGTCTTC	NA	False	NA	-5	True	AATAAA	-15	NA	76984618	76984047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_76984000_76984600
ENSMUSG00000059436.14_13	chr12	-	2710	5	NIC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	4	2	intron_retention	FALSE	canonical	3	16	junction_4	22.1288838399048	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	-3	True	AATAAA	-17	NA	77008971	76984045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_76986289_76986740_76986865_76999942_77000051_77008036_77008064_77008763
ENSMUSG00000059436.14_14	chr12	-	2043	6	NIC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	23.3032186618072	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCGGTAGTAGTGTCTTC	NA	False	NA	-5	True	AATAAA	-15	NA	77008980	76984047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_76985530_76986203_76986289_76986740_76986865_76999942_77000051_77008036_77008064_77008763
ENSMUSG00000059436.14_16	chr12	-	1706	3	ISM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	8921	1	-95	-1	3prime_fragment	FALSE	canonical	3	49	junction_1	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTAGTAGTGTCTTCTTAA	NA	False	NA	-1	True	AATAAA	-19	NA	77000038	76984043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_76985530_76986740_76986865_76999942
ENSMUSG00000059436.14_2	chr12	-	1926	4	FSM	ENSMUSG00000059436.14	ENSMUST00000082136.7	1926	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	8.28653526310404	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCGGTAGTAGTGTCTTC	NA	False	NA	-5	True	AATAAA	-15	NA	77008975	76984047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008763
ENSMUSG00000059436.14_3	chr12	-	2017	5	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-5	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	27.5714979643834	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGGTAGTAGTGTCTTCT	NA	False	NA	-4	True	AATAAA	-16	NA	77008980	76984046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_76985530_76986203_76986289_76986740_76986865_76999942_77000051_77008763
ENSMUSG00000059436.14_8	chr12	-	2704	4	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-17	2	intron_retention	FALSE	canonical	3	20	junction_1	20.7257220756131	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	-3	True	AATAAA	-17	NA	77008992	76984045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_76986289_76986740_76986865_76999942_77000051_77008763
ENSMUSG00000059439.16_10	chr11	+	3602	25	NNC	ENSMUSG00000059439.16	novel	3724	27	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	33.8263539599263	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTCCTGAGTTGCTGGG	3491	False	NA	10	True	AATAAA	-18	NA	85244005	85716880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_85244060_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722_85474824_85692607_85692779_85712847_85712939_85716027
ENSMUSG00000059439.16_5	chr11	+	3504	24	NNC	ENSMUSG00000059439.16	novel	2769	24	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	29.2137678912621	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATTCCTGAGTTGCTG	3496	False	NA	8	True	AATAAA	-16	NA	85244010	85716878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_85244060_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722_85474824_85692607_85692779_85716027
ENSMUSG00000059439.16_6	chr11	+	3666	26	NNC	ENSMUSG00000059439.16	novel	3724	27	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	35.6583790994487	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATTCCTGAGTTGCTG	3491	False	NA	8	True	AATAAA	-16	NA	85244005	85716878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_85244060_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722_85474824_85692607_85692779_85704825_85704892_85712847_85712939_85716027
ENSMUSG00000059447.14_1	chr5	+	1980	16	FSM	ENSMUSG00000059447.14	ENSMUST00000026841.15	2033	16	42	11	-13	0	multi-exon	FALSE	canonical	3	438	junction_6	59.1301389591918	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGACTGTTCGTAGTCTC	NA	False	NA	-1	True	AATAAA	-14	NA	30360287	30389580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
ENSMUSG00000059447.14_8	chr5	+	2018	16	FSM	ENSMUSG00000059447.14	ENSMUST00000114786.8	2048	16	23	7	-8	0	multi-exon	FALSE	canonical	0	0	junction_1	146.097988426337	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGACTGTTCGTAGTCTC	NA	False	NA	-1	True	AATAAA	-14	NA	30360292	30389580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30360381_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
ENSMUSG00000059456.14_0	chr14	-	3964	31	FSM	ENSMUSG00000059456.14	ENSMUST00000022622.14	4034	31	66	4	-4	1	multi-exon	FALSE	canonical	2	2	junction_25	4.30103346753881	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGCTTGACTGTGTCGGT	NA	False	NA	-3	True	ATTAAA	-22	NA	66518435	66390709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_66391719_66393420_66393502_66393738_66393877_66394509_66394557_66395496_66395522_66395832_66395869_66395979_66396127_66400473_66400600_66402712_66402779_66404115_66404225_66406691_66406897_66407686_66407777_66407932_66408034_66409131_66409248_66409507_66409609_66409924_66410010_66410754_66410853_66411286_66411338_66412197_66412245_66412621_66412662_66413072_66413191_66414511_66414614_66415140_66415216_66415484_66415626_66416040_66416096_66416279_66416343_66424891_66424972_66427022_66427111_66427504_66427684_66450760_66451002_66518331
ENSMUSG00000059456.14_2	chr14	-	2801	21	ISM	ENSMUSG00000059456.14	ENSMUST00000178730.8	3863	30	37842	7	-5428	2	3prime_fragment	FALSE	canonical	2	7	junction_12	3.25729949498047	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTTAGCTTGACTGTGT	NA	False	NA	-7	True	ATTAAA	-18	NA	66413159	66390713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_66391719_66393420_66393502_66393738_66393877_66394509_66394557_66395496_66395522_66395832_66395869_66395979_66396127_66400473_66400600_66402712_66402779_66404115_66404225_66406691_66406897_66407686_66407777_66407932_66408034_66409131_66409248_66409507_66409609_66409924_66410010_66410754_66410853_66411286_66411338_66412197_66412245_66412621_66412662_66413072
ENSMUSG00000059456.14_3	chr14	-	3351	27	ISM	ENSMUSG00000059456.14	ENSMUST00000178730.8	3863	30	26030	4	-17240	0	3prime_fragment	FALSE	canonical	2	2	junction_25	4.06838729079828	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTAGCTTGACTGTGTCGG	NA	False	NA	-4	True	ATTAAA	-21	NA	66424971	66390710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_66391719_66393420_66393502_66393738_66393877_66394509_66394557_66395496_66395522_66395832_66395869_66395979_66396127_66400473_66400600_66402712_66402779_66404115_66404225_66406691_66406897_66407686_66407777_66407932_66408034_66409131_66409248_66409507_66409609_66409924_66410010_66410754_66410853_66411286_66411338_66412197_66412245_66412621_66412662_66413072_66413191_66414511_66414614_66415140_66415216_66415484_66415626_66416040_66416096_66416279_66416343_66424891
ENSMUSG00000059456.14_6	chr14	-	1901	11	ISM	ENSMUSG00000059456.14	ENSMUST00000178730.8	3863	30	44196	0	926	0	3prime_fragment	FALSE	canonical	2	11	junction_2	2.18174242292714	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGACTGTGTCGGTTAT	NA	False	NA	0	True	ATTAAA	-25	NA	66406805	66390706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_66391719_66393420_66393502_66393738_66393877_66394509_66394557_66395496_66395522_66395832_66395869_66395979_66396127_66400473_66400600_66402712_66402779_66404115_66404225_66406691
ENSMUSG00000059461.8_0	chrX	+	489	1	FSM	ENSMUSG00000059461.8	ENSMUST00000118642.2	387	1	-35	-67	-35	67	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-26	NA	161349817	161350306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_161349800_161350300
ENSMUSG00000059474.14_11	chr11	+	5267	16	NIC	ENSMUSG00000059474.14	novel	5245	16	NA	NA	9	-14	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	37.4358117315492	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTAAGCTTTATTTTAT	NA	False	NA	5	True	AATAAA	-6	NA	93776700	93837797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_93776948_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ENSMUSG00000059474.14_2	chr11	+	5237	16	FSM	ENSMUSG00000059474.14	ENSMUST00000107853.8	5245	16	1	7	1	-7	multi-exon	FALSE	canonical	3	14	junction_1	36.201657420621	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTTATTTTATCAATTTT	NA	False	NA	12	True	AATAAA	-13	NA	93776678	93837804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_93776889_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ENSMUSG00000059474.14_20	chr11	+	5312	17	NIC	ENSMUSG00000059474.14	novel	3785	18	NA	NA	-24	-8	combination_of_known_junctions	FALSE	canonical	3	43	junction_2	31.7736132663567	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTTATTTTATCAATTT	NA	False	NA	11	True	AATAAA	-12	NA	93777008	93837803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_93777243_93777847_93777900_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ENSMUSG00000059474.14_22	chr11	+	5240	16	FSM	ENSMUSG00000059474.14	ENSMUST00000107854.9	5232	16	-17	9	-5	-9	multi-exon	FALSE	canonical	3	19	junction_1	35.1887608319601	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTTTATTTTATCAATT	NA	False	NA	10	True	AATAAA	-11	NA	93777027	93837802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_93777243_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ENSMUSG00000059474.14_24	chr11	+	5433	17	NIC	ENSMUSG00000059474.14	novel	3785	18	NA	NA	-32	-8	combination_of_known_junctions	FALSE	canonical	3	17	junction_16	40.9622062851844	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTTATTTTATCAATTT	NA	False	NA	11	True	AATAAA	-12	NA	93777000	93837803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_93777243_93777847_93777900_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834487
ENSMUSG00000059474.14_29	chr11	+	5359	18	NIC	ENSMUSG00000059474.14	novel	3785	18	NA	NA	-21	-8	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	41.2407061984984	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTTATTTTATCAATTT	NA	False	NA	11	True	AATAAA	-12	NA	93777011	93837803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_93777243_93777847_93777900_93782164_93782215_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
ENSMUSG00000059474.14_69	chr11	+	2566	1	ISM	ENSMUSG00000059474.14	ENSMUST00000107853.8	5245	16	58560	8	18872	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTTATTTTATCAATTT	NA	False	NA	11	True	AATAAA	-12	NA	93835237	93837803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_93835200_93837800
ENSMUSG00000059475.14_0	chr9	-	3047	9	FSM	ENSMUSG00000059475.14	ENSMUST00000080386.13	2417	9	-9	-621	-5	-218	multi-exon	FALSE	canonical	2	5	junction_8	9.71387538524146	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGTCTATGACTTTGCTG	NA	False	NA	-7	True	NA	NA	NA	20404047	20380221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681_20403748_20403993
ENSMUSG00000059475.14_1	chr9	-	3264	8	ISM	ENSMUSG00000059475.14	ENSMUST00000080386.13	2417	9	15	-616	4	-223	intron_retention	FALSE	canonical	3	13	junction_7	7.74333156163866	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTACTGGTCTATGACTT	NA	False	NA	-12	True	NA	NA	NA	20404023	20380226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681
ENSMUSG00000059475.14_10	chr9	-	2068	1	ISM	ENSMUSG00000059475.14	ENSMUST00000168095.8	3208	6	7275	379	2467	-220	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGGTCTATGACTTTGC	2827	False	NA	-9	True	NA	NA	NA	20382291	20380223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20380200_20382300
ENSMUSG00000059475.14_19	chr9	-	2820	6	FSM	ENSMUSG00000059475.14	ENSMUST00000166005.8	1653	6	-98	-1069	-1	-218	multi-exon	FALSE	canonical	3	15	junction_1	6.74091981854109	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGTCTATGACTTTGCTG	NA	False	NA	-7	True	NA	NA	NA	20389551	20380221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428
ENSMUSG00000059475.14_2	chr9	-	3137	7	NIC	ENSMUSG00000059475.14	novel	2135	9	NA	NA	5	-218	intron_retention	FALSE	canonical	2	5	junction_6	11.2694276695846	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGTCTATGACTTTGCTG	NA	False	NA	-7	True	NA	NA	NA	20404002	20380221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_20382542_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20403681
ENSMUSG00000059475.14_22	chr9	-	2925	8	NIC	ENSMUSG00000059475.14	novel	2417	9	NA	NA	3	-220	combination_of_known_junctions	FALSE	canonical	2	5	junction_6	11.6916156946344	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGGTCTATGACTTTGC	NA	False	NA	-9	True	NA	NA	NA	20404035	20380223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20403681_20403748_20403993
ENSMUSG00000059475.14_3	chr9	-	2676	8	ISM	ENSMUSG00000059475.14	ENSMUST00000163348.8	2135	9	2	-297	2	18	intron_retention	FALSE	canonical	3	10	junction_1	8.75750407085377	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACAAAAGCATTCTCCAT	NA	False	NA	NA	False	AATAAA	-15	NA	20404036	20380824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20382542_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681
ENSMUSG00000059475.14_4	chr9	-	3029	9	FSM	ENSMUSG00000059475.14	ENSMUST00000163348.8	2135	9	1	-895	1	-223	multi-exon	FALSE	canonical	2	5	junction_8	10.295630140987	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTACTGGTCTATGACTT	NA	False	NA	-12	True	NA	NA	NA	20404037	20380226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20382542_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681_20403748_20403993
ENSMUSG00000059475.14_9	chr9	-	3167	7	FSM	ENSMUSG00000059475.14	ENSMUST00000115562.9	3557	7	7	383	3	-224	multi-exon	FALSE	canonical	2	5	junction_6	10.4309901522126	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTACTGGTCTATGACT	NA	False	NA	-13	True	NA	NA	NA	20404035	20380227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20403681
ENSMUSG00000059479.8_0	chr7	+	1846	1	FSM	ENSMUSG00000059479.8	ENSMUST00000206824.2	1844	1	-3	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCCAAGGCCAGGAGCGA	9964	False	NA	4	True	NA	NA	NA	25327063	25328909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_25327100_25328900
ENSMUSG00000059482.16_0	chr4	+	2024	6	FSM	ENSMUSG00000059482.16	ENSMUST00000080517.14	2116	6	92	0	22	0	multi-exon	FALSE	canonical	3	121	junction_4	10.0079968025574	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATGTCTCTGTGCAA	17	True	NA	11	True	AATAAA	-15	NA	10874589	10899421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_10874773_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897898
ENSMUSG00000059482.16_1	chr4	+	1955	6	NIC	ENSMUSG00000059482.16	novel	2116	6	NA	NA	10	-2	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	50.5885362508148	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTATGTCTCTGTGC	5	True	NA	9	True	AATAAA	-13	NA	10874577	10899419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_10874694_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897898
ENSMUSG00000059486.12_1	chr6	-	3775	4	FSM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	37	4	37	-3	multi-exon	FALSE	canonical	3	176	junction_3	4.02768199119819	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATCTGTTGGTTTTTTGG	9740	False	NA	-4	True	AATAAA	-13	NA	56774684	56754512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_56757399_56758785_56758952_56766203_56766686_56774443
ENSMUSG00000059486.12_10	chr6	-	3714	4	NIC	ENSMUSG00000059486.12	novel	3816	4	NA	NA	-63	-3	combination_of_known_junctions	FALSE	canonical	1	5	junction_3	83.0314532103481	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATCTGTTGGTTTTTTGG	NA	False	NA	-4	True	AATAAA	-13	NA	56774327	56754512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_56757399_56758785_56758952_56766203_56766686_56774147
ENSMUSG00000059486.12_6	chr6	-	3762	4	FSM	ENSMUSG00000059486.12	ENSMUST00000114321.2	3868	4	103	3	26	-3	multi-exon	FALSE	canonical	3	30	junction_3	71.2569684701472	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATCTGTTGGTTTTTTGG	9729	False	NA	-4	True	AATAAA	-13	NA	56774695	56754512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_56757399_56758785_56758952_56766203_56766686_56774467
ENSMUSG00000059486.12_7	chr6	-	1998	1	ISM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	18211	4	17222	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATCTGTTGGTTTTTTGG	NA	False	NA	-4	True	AATAAA	-13	NA	56756510	56754512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_56754500_56756500
ENSMUSG00000059486.12_8	chr6	-	3357	3	ISM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	8214	3	7225	-2	3prime_fragment	FALSE	canonical	3	177	junction_2	4	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATCTGTTGGTTTTTTGGT	NA	False	NA	-3	True	AATAAA	-14	NA	56766507	56754511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_56757399_56758785_56758952_56766203
ENSMUSG00000059495.15_0	chr9	-	3736	2	NNC	ENSMUSG00000059495.15	novel	10752	41	NA	NA	59015	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAACTGAGTATGTGAC	NA	False	NA	-12	True	ATTAAA	-8	NA	42878941	42875148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_42875752_42875808
ENSMUSG00000059495.15_1	chr9	-	3271	1	ISM	ENSMUSG00000059495.15	ENSMUST00000165665.9	10752	41	138863	11	59537	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAACTGAGTATGTGAC	NA	False	NA	-12	True	ATTAAA	-8	NA	42878419	42875148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_42875100_42878400
ENSMUSG00000059495.15_16	chr9	-	5699	40	NIC	ENSMUSG00000059495.15	novel	10752	41	NA	NA	-17	-5012	combination_of_known_junctions	FALSE	canonical	2	6	junction_29	6.17666708711603	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTTATTTGACTTCAT	NA	False	NA	NA	False	TATAAA	-33	NA	43017299	42880150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_42880489_42881008_42881079_42882288_42882603_42883290_42883762_42885852_42886087_42886328_42886409_42886523_42886611_42887328_42887417_42888931_42889100_42889501_42889578_42890691_42890770_42893243_42893345_42895669_42895785_42897757_42897884_42900255_42900342_42901270_42901418_42903169_42903325_42903831_42903868_42904284_42904418_42908869_42909083_42910361_42910468_42911243_42911359_42911652_42911686_42912264_42912403_42912741_42912848_42913153_42913197_42916839_42916939_42917131_42917243_42919311_42919408_42921474_42921550_42927198_42927340_42929347_42929468_42929630_42929709_42931900_42932080_42934110_42934169_42937475_42937526_42938492_42938592_42953886_42953973_42955559_42955584_43016473
ENSMUSG00000059495.15_23	chr9	-	5674	40	NIC	ENSMUSG00000059495.15	novel	10059	42	NA	NA	-14	-5031	combination_of_known_junctions	FALSE	canonical	2	9	junction_32	5.59632639907851	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAGAGAAAATCAGA	NA	False	NA	NA	False	TATAAA	-14	NA	43017296	42880169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_42880489_42881008_42881079_42882288_42882603_42883290_42883762_42885852_42886087_42886328_42886409_42886523_42886611_42887328_42887417_42888931_42889100_42889501_42889578_42890691_42890770_42893243_42893345_42895669_42895785_42897757_42897884_42900255_42900342_42901270_42901418_42903169_42903325_42903831_42903868_42904284_42904418_42908869_42909083_42910361_42910468_42911243_42911359_42911652_42911686_42912264_42912403_42912741_42912848_42913153_42913197_42916839_42916939_42917131_42917243_42919311_42919405_42921474_42921550_42927198_42927340_42929347_42929468_42929630_42929709_42931900_42932080_42934110_42934169_42937475_42937526_42938492_42938592_42953886_42953973_42955559_42955584_43016473
ENSMUSG00000059495.15_27	chr9	-	4124	31	ISM	ENSMUSG00000059495.15	ENSMUST00000165665.9	10752	41	90047	4964	10721	-4963	3prime_fragment	FALSE	canonical	3	6	junction_29	5.15363949069005	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCCTTGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	42927235	42880101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_42880489_42881008_42881079_42882288_42882603_42883290_42883762_42885852_42886087_42886328_42886409_42886523_42886611_42887328_42887417_42888931_42889100_42889501_42889578_42890691_42890770_42893243_42893345_42895669_42895785_42897757_42897884_42900255_42900342_42901270_42901418_42903169_42903325_42903831_42903868_42904284_42904418_42908869_42909083_42910361_42910468_42911243_42911359_42911652_42911686_42912264_42912403_42912741_42912848_42913153_42913197_42916839_42916939_42917131_42917243_42919311_42919408_42921474_42921550_42927198
ENSMUSG00000059495.15_31	chr9	-	2951	5	NIC	ENSMUSG00000059495.15	novel	10752	41	NA	NA	-76	-27	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	5.11737237261468	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43017358	42935668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_42937526_42938492_42938592_42953886_42953973_42955559_42955584_43016473
ENSMUSG00000059495.15_5	chr9	-	4121	31	ISM	ENSMUSG00000059495.15	ENSMUST00000072767.7	10059	42	89546	4963	10721	-4963	internal_fragment	FALSE	canonical	3	18	junction_25	4.01995024844836	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCCTTGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	42927235	42880101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_42880489_42881008_42881079_42882288_42882603_42883290_42883762_42885852_42886087_42886328_42886409_42886523_42886611_42887328_42887417_42888931_42889100_42889501_42889578_42890691_42890770_42893243_42893345_42895669_42895785_42897757_42897884_42900255_42900342_42901270_42901418_42903169_42903325_42903831_42903868_42904284_42904418_42908869_42909083_42910361_42910468_42911243_42911359_42911652_42911686_42912264_42912403_42912741_42912848_42913153_42913197_42916839_42916939_42917131_42917243_42919311_42919405_42921474_42921550_42927198
ENSMUSG00000059498.14_0	chr1	-	1287	3	FSM	ENSMUSG00000059498.14	ENSMUST00000168817.2	1298	3	-2	13	-2	8	multi-exon	FALSE	canonical	3	151	junction_2	7.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACGGTGGGCTAAGGATC	NA	False	NA	-20	True	AATAAA	-11	NA	170885625	170878755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_170879422_170881507_170881763_170885259
ENSMUSG00000059498.14_2	chr1	-	891	2	ISM	ENSMUSG00000059498.14	ENSMUST00000168817.2	1298	3	3903	1	3903	0	3prime_fragment	FALSE	canonical	3	166	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGATCTCCTTTTGGTGA	3739	False	NA	-8	True	AATAAA	-23	NA	170881720	170878743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_170879422_170881507
ENSMUSG00000059498.14_3	chr1	-	1227	4	ISM	ENSMUSG00000059498.14	ENSMUST00000164044.8	1347	5	781	1	-568	-1	3prime_fragment	FALSE	canonical	3	16	junction_3	67.4536878161602	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGGATCTCCTTTTGGTG	NA	False	NA	-9	True	AATAAA	-22	NA	170886191	170878744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_170879422_170881507_170881763_170885259_170885518_170886154
ENSMUSG00000059518.15_0	chr5	-	689	5	FSM	ENSMUSG00000059518.15	ENSMUST00000156963.8	1208	5	485	34	7	-4	multi-exon	FALSE	canonical	0	0	junction_4	134.024251536802	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGCCTGCCTGCTCATTC	NA	False	NA	-2	True	AATAAA	-14	NA	137016390	137011051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137016342
ENSMUSG00000059518.15_1	chr5	-	681	5	FSM	ENSMUSG00000059518.15	ENSMUST00000085941.12	740	5	52	7	-20	-3	multi-exon	FALSE	canonical	3	69	junction_4	104.169033306449	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCTGCCTGCTCATTCT	NA	False	NA	-1	True	AATAAA	-15	NA	137015703	137011050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137015664
ENSMUSG00000059518.15_12	chr5	-	770	5	ISM	ENSMUSG00000059518.15	ENSMUST00000111091.8	1070	6	975	-120	572	-7	3prime_fragment	FALSE	canonical	1	15	junction_4	127.533083942952	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAAGCCTGCCTGCTCA	NA	False	NA	-5	True	AATAAA	-11	NA	137015111	137011054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137014979
ENSMUSG00000059518.15_2	chr5	-	780	4	FSM	ENSMUSG00000059518.15	ENSMUST00000034953.14	764	4	-18	2	-18	-2	multi-exon	FALSE	canonical	3	69	junction_3	111.749720357592	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGCCTGCTCATTCTG	NA	False	NA	0	True	AATAAA	-16	NA	137015701	137011049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137015664
ENSMUSG00000059518.15_3	chr5	-	772	4	FSM	ENSMUSG00000059518.15	ENSMUST00000111090.9	698	4	26	-100	-9	-2	multi-exon	FALSE	canonical	0	0	junction_3	144.270579121316	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGCCTGCTCATTCTG	NA	False	NA	0	True	AATAAA	-16	NA	137016371	137011049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137016342
ENSMUSG00000059518.15_5	chr5	-	2543	3	ISM	ENSMUSG00000059518.15	ENSMUST00000034953.14	764	4	-21	3	-21	-3	intron_retention	FALSE	canonical	3	303	junction_2	3	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCTGCCTGCTCATTCT	NA	False	NA	-1	True	AATAAA	-15	NA	137015704	137011050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137011542_137011721_137011802_137013732
ENSMUSG00000059518.15_6	chr5	-	644	4	ISM	ENSMUSG00000059518.15	ENSMUST00000085941.12	740	5	1850	7	1778	-3	3prime_fragment	FALSE	canonical	3	303	junction_3	5.31245915016974	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCTGCCTGCTCATTCT	NA	False	NA	-1	True	AATAAA	-15	NA	137013905	137011050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732
ENSMUSG00000059518.15_7	chr5	-	5132	2	ISM	ENSMUSG00000059518.15	ENSMUST00000111090.9	698	4	36	-100	1	-2	intron_retention	FALSE	canonical	3	309	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGCCTGCTCATTCTG	NA	False	NA	0	True	AATAAA	-16	NA	137016361	137011049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137011542_137011721
ENSMUSG00000059534.9_0	chr11	-	505	3	FSM	ENSMUSG00000059534.9	ENSMUST00000151559.2	510	3	4	1	4	-1	multi-exon	FALSE	canonical	3	506	junction_1	31	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCGGCTTTTGCACGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	4654330	4651975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4652221_4653903_4653990_4654156
ENSMUSG00000059534.9_1	chr11	-	421	2	FSM	ENSMUSG00000059534.9	ENSMUST00000058407.6	434	2	10	3	2	-1	multi-exon	FALSE	canonical	3	8152	junction_1	0	1346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCGGCTTTTGCACGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	4654332	4651975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4652221_4654156
ENSMUSG00000059540.16_0	chr2	+	1170	10	FSM	ENSMUSG00000059540.16	ENSMUST00000103042.10	1183	10	1	12	1	-3	multi-exon	FALSE	canonical	3	30	junction_1	6.17841723309237	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACAGGCTTCAGCTGGG	2293	False	NA	10	True	ATTAAA	-24	NA	181322103	181329852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_181322269_181325005_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390_181328546_181328620_181328768_181329406_181329479_181329669
ENSMUSG00000059540.16_2	chr2	+	1523	9	NIC	ENSMUSG00000059540.16	novel	1183	10	NA	NA	-4	5	intron_retention	FALSE	canonical	3	30	junction_1	5.86834729715275	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAACACAGGCTTCAGCT	2288	False	NA	7	True	ATTAAA	-21	NA	181322098	181329849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_181322269_181325005_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328546_181328620_181328768_181329406_181329479_181329669
ENSMUSG00000059540.16_3	chr2	+	4264	8	NIC	ENSMUSG00000059540.16	novel	1183	10	NA	NA	1	3	intron_retention	FALSE	canonical	3	37	junction_3	4.88228785446716	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTTCAGCTGGGTCCTGT	2293	False	NA	16	True	ATTAAA	-30	NA	181322103	181329858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328546_181328620_181328768_181329406_181329479_181329669
ENSMUSG00000059540.16_5	chr2	+	5776	6	NIC	ENSMUSG00000059540.16	novel	1183	10	NA	NA	7	-4	intron_retention	FALSE	canonical	3	37	junction_5	5.40370243444252	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACACAGGCTTCAGCTGG	2299	False	NA	9	True	ATTAAA	-23	NA	181322109	181329851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_181325069_181325340_181325447_181326235_181328546_181328620_181328768_181329406_181329479_181329669
ENSMUSG00000059540.16_6	chr2	+	3892	9	NIC	ENSMUSG00000059540.16	novel	1045	10	NA	NA	8	0	intron_retention	FALSE	canonical	3	31	junction_5	5.66651347832157	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGGCTAAACACAGGCTT	2300	False	NA	2	True	ATTAAA	-16	NA	181322110	181329844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390_181328546_181328620_181328768_181329406_181329479_181329669
ENSMUSG00000059540.16_7	chr2	+	1435	10	NIC	ENSMUSG00000059540.16	novel	1183	10	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	13.0469238605206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGGCTAAACACAGGCTT	2280	False	NA	2	True	ATTAAA	-16	NA	181322090	181329844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_181322529_181325005_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390_181328546_181328620_181328768_181329406_181329479_181329669
ENSMUSG00000059552.14_0	chr11	+	1723	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108658.10	1771	11	46	2	0	-2	multi-exon	FALSE	canonical	3	1895	junction_3	134.752402575984	2109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGGTTTTGAGAGGTT	NA	False	NA	13	True	AATAAA	-14	NA	69471230	69482696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
ENSMUSG00000059552.14_1	chr11	+	1819	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108657.4	1822	11	0	3	0	-2	multi-exon	FALSE	canonical	3	351	junction_10	535.886405873484	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGGTTTTGAGAGGTT	NA	False	NA	13	True	AATAAA	-14	NA	69471230	69482696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
ENSMUSG00000059554.13_0	chr10	-	2230	7	NNC	ENSMUSG00000059554.13	novel	1190	6	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_2	27.7968823191858	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCGTCATCTCTGTTTTC	NA	False	NA	-9	True	AATAAA	-12	NA	18110733	18089432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_18089927_18092007_18092031_18093080_18094141_18095235_18095391_18100644_18100809_18106166_18106367_18110599
ENSMUSG00000059554.13_10	chr10	-	2099	5	FSM	ENSMUSG00000059554.13	ENSMUST00000052648.9	2255	5	5	151	5	-151	multi-exon	FALSE	canonical	3	18	junction_1	22.796655456448	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATTATGGTTATGAAGA	NA	False	NA	NA	False	AATAAA	-7	NA	18110721	18092682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_18094141_18095235_18095391_18100644_18100809_18106166_18106367_18110599
ENSMUSG00000059554.13_3	chr10	-	1164	6	FSM	ENSMUSG00000059554.13	ENSMUST00000080860.13	1190	6	23	3	5	-3	multi-exon	FALSE	canonical	3	48	junction_2	8.9977775033616	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTCTGTTTTCTGTTTA	NA	False	NA	-3	True	AATAAA	-18	NA	18110721	18089426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18106166_18106367_18110599
ENSMUSG00000059554.13_4	chr10	-	3252	6	NIC	ENSMUSG00000059554.13	novel	1190	6	NA	NA	21	-3	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	20.4782811778723	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCGTCATCTCTGTTTTC	NA	False	NA	-9	True	AATAAA	-12	NA	18110705	18089432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_18089927_18092007_18094141_18095235_18095391_18100644_18100809_18106166_18106367_18110599
ENSMUSG00000059554.13_9	chr10	-	1487	2	FSM	ENSMUSG00000059554.13	ENSMUST00000174631.2	480	2	-917	-90	-917	-3	multi-exon	FALSE	canonical	3	62	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCGTCATCTCTGTTTTC	1363	False	NA	-9	True	AATAAA	-12	NA	18093000	18089432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_18089927_18092007
ENSMUSG00000059555.7_0	chr2	-	3212	2	FSM	ENSMUSG00000059555.7	ENSMUST00000081869.7	3255	2	268	-225	141	225	multi-exon	FALSE	canonical	3	13	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATC	8530	False	NA	NA	False	NA	NA	NA	25086630	25082752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25085938_25086603
ENSMUSG00000059555.7_1	chr2	-	3039	1	NIC	ENSMUSG00000059555.7	novel	3255	2	NA	NA	753	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCACCCACCTTCTTTTC	9142	False	NA	NA	False	AATAAA	-15	NA	25086018	25082979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25083000_25086000
ENSMUSG00000059586.11_0	chr15	+	1151	8	FSM	ENSMUSG00000059586.11	ENSMUST00000227173.2	1122	8	-19	-10	-19	-2	multi-exon	FALSE	canonical	3	123	junction_4	348.219025608766	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCAGCATGGTCCTGTC	NA	False	NA	14	True	AATAAA	-15	NA	59246114	59473531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59368625_59368704_59463545_59463647_59463986_59464094_59473188
ENSMUSG00000059586.11_1	chr15	+	1074	7	FSM	ENSMUSG00000059586.11	ENSMUST00000079703.11	1054	7	-21	1	-19	-1	multi-exon	FALSE	canonical	3	776	junction_4	74.7677886674618	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCAGCATGGTCCTGTCT	NA	False	NA	15	True	AATAAA	-16	NA	59246114	59473532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59463545_59463647_59463986_59464094_59473188
ENSMUSG00000059625.7_0	chr2	-	1337	8	FSM	ENSMUSG00000059625.7	ENSMUST00000076989.7	1289	8	-56	8	-56	-8	multi-exon	FALSE	canonical	1	1	junction_3	2.18529407725405	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAAATTTCCCTGGCTT	NA	False	NA	NA	False	ATTAAA	-24	NA	25737316	25733014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25733372_25733935_25734013_25734497_25734685_25735273_25735408_25735664_25735790_25736220_25736369_25736729_25736865_25737142
ENSMUSG00000059669.9_15	chr12	+	1916	14	ISM	ENSMUSG00000059669.9	ENSMUST00000075954.9	2209	15	2076	3	1805	-3	3prime_fragment	FALSE	canonical	3	207	junction_3	27.8701554019739	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGACACCTGGAAACTTG	NA	False	NA	9	True	ATTAAA	-18	NA	24550433	24608535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
ENSMUSG00000059669.9_2	chr12	+	1956	15	FSM	ENSMUSG00000059669.9	ENSMUST00000075954.9	2209	15	246	7	-6	-7	multi-exon	FALSE	canonical	3	207	junction_4	28.2355254592363	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAAATGACACCTGGAAA	NA	False	NA	5	True	ATTAAA	-14	NA	24548603	24608531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
ENSMUSG00000059689.16_0	chr6	+	1129	3	FSM	ENSMUSG00000059689.16	ENSMUST00000164472.8	1098	3	-31	0	30	0	multi-exon	FALSE	canonical	3	26	junction_1	15	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818171	117822916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_117818230_117820213_117820354_117821985
ENSMUSG00000059689.16_2	chr6	+	1138	3	FSM	ENSMUSG00000059689.16	ENSMUST00000112859.8	421	3	26	-743	25	0	multi-exon	FALSE	canonical	3	13	junction_2	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818166	117822916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_117818230_117820213_117820358_117821985
ENSMUSG00000059689.16_4	chr6	+	1187	3	FSM	ENSMUSG00000059689.16	ENSMUST00000136889.8	659	3	13	-541	0	-1	multi-exon	FALSE	canonical	3	25	junction_1	15.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAGGTATTTTTCATAAT	NA	False	NA	9	True	AATAAA	-16	NA	117818241	117822915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_117818359_117820213_117820354_117821985
ENSMUSG00000059689.16_5	chr6	+	1204	3	FSM	ENSMUSG00000059689.16	ENSMUST00000112858.8	650	3	-15	-539	-2	-3	multi-exon	FALSE	canonical	3	13	junction_2	6	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATCAGGTATTTTTCATA	NA	False	NA	7	True	AATAAA	-14	NA	117818226	117822913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_117818359_117820213_117820358_117821985
ENSMUSG00000059708.13_0	chrX	-	5334	6	FSM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	-272	-3692	27	127	multi-exon	FALSE	canonical	3	34	junction_4	11.6687617166519	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGACAATAGTGACTATTG	NA	False	NA	NA	False	AATAAA	-10	NA	35909021	35871839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_35876318_35877907_35877977_35878338_35878574_35882255_35882387_35900125_35900228_35908702
ENSMUSG00000059708.13_1	chrX	-	6097	7	FSM	ENSMUSG00000059708.13	ENSMUST00000051906.13	6003	7	30	-124	30	124	multi-exon	FALSE	canonical	3	11	junction_4	20.573040611441	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGTGACAATAGTGACTA	NA	False	NA	NA	False	AATAAA	-7	NA	35909018	35871842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_35876318_35877907_35877977_35878338_35878574_35882255_35882387_35887220_35887990_35900125_35900228_35908702
ENSMUSG00000059708.13_2	chrX	-	3271	1	Genic_Genomic	ENSMUSG00000059708.13	novel	NA	NA	NA	NA	33636	124	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGTGACAATAGTGACTA	6308	False	NA	NA	False	AATAAA	-7	NA	35875113	35871842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_35871800_35875100
ENSMUSG00000059708.13_4	chrX	-	5233	5	NIC	ENSMUSG00000059708.13	novel	1370	6	NA	NA	26	127	combination_of_known_splicesites	FALSE	canonical	2	6	junction_4	23.710493457539	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGACAATAGTGACTATTG	NA	False	NA	NA	False	AATAAA	-10	NA	35909022	35871839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_35876318_35877907_35877977_35878338_35878574_35882255_35882387_35908702
ENSMUSG00000059708.13_5	chrX	-	4637	3	ISM	ENSMUSG00000059708.13	ENSMUST00000051906.13	6003	7	30624	-131	30325	131	3prime_fragment	FALSE	canonical	3	63	junction_1	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATAGTGACTATTGACTG	2997	False	NA	NA	False	AATAAA	-14	NA	35878424	35871835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_35876318_35877907_35877977_35878338
ENSMUSG00000059713.13_0	chr4	-	5061	5	NIC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	11	-6	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.0078105935821	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGCTCATTGAGCAGT	NA	False	NA	-10	True	AATAAA	-16	NA	135161123	135139624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_135143910_135145690_135145863_135147556_135147731_135152524_135152754_135160922
ENSMUSG00000059713.13_1	chr4	-	3114	1	NIC	ENSMUSG00000059713.13	novel	583	4	NA	NA	9840	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGCTCATTGAGCAGT	NA	False	NA	-10	True	AATAAA	-16	NA	135142738	135139624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_135139600_135142700
ENSMUSG00000059713.13_3	chr4	-	960	5	NIC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	4	-6	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	31.244999599936	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGCTCATTGAGCAGT	NA	False	NA	-10	True	AATAAA	-16	NA	135161130	135139624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_135139802_135145690_135145863_135147556_135147731_135152524_135152754_135160922
ENSMUSG00000059713.13_5	chr4	-	936	5	NIC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	31	-6	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	38.7774096607806	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGCTCATTGAGCAGT	NA	False	NA	-10	True	AATAAA	-16	NA	135161103	135139624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_135139802_135145690_135145863_135147556_135147731_135152524_135152757_135160922
ENSMUSG00000059713.13_6	chr4	-	4360	2	ISM	ENSMUSG00000059713.13	ENSMUST00000030606.14	5111	5	15399	6	6813	-6	3prime_fragment	FALSE	canonical	3	66	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGCTCATTGAGCAGT	NA	False	NA	-10	True	AATAAA	-16	NA	135145765	135139624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_135143910_135145690
ENSMUSG00000059713.13_7	chr4	-	5064	5	FSM	ENSMUSG00000059713.13	ENSMUST00000030606.14	5111	5	41	6	11	-6	multi-exon	FALSE	canonical	3	12	junction_4	34.9311823447189	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGCTCATTGAGCAGT	NA	False	NA	-10	True	AATAAA	-16	NA	135161123	135139624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135143910_135145690_135145863_135147556_135147731_135152524_135152757_135160922
ENSMUSG00000059713.13_9	chr4	-	4736	3	ISM	ENSMUSG00000059713.13	ENSMUST00000030606.14	5111	5	13329	6	4743	-6	3prime_fragment	FALSE	canonical	3	66	junction_1	15.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGCTCATTGAGCAGT	NA	False	NA	-10	True	AATAAA	-16	NA	135147835	135139624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_135143910_135145690_135145863_135147556
ENSMUSG00000059714.14_0	chr17	+	1675	13	FSM	ENSMUSG00000059714.14	ENSMUST00000001569.15	1825	13	140	10	-12	-10	multi-exon	FALSE	canonical	3	176	junction_8	11.7434970184448	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGGTTATCTATACTTC	NA	False	NA	15	True	ATTAAA	-13	NA	36134261	36143673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36134394_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
ENSMUSG00000059714.14_3	chr17	+	1590	12	NIC	ENSMUSG00000059714.14	novel	1825	13	NA	NA	17	-10	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	49.9444319318153	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGGTTATCTATACTTC	NA	False	NA	15	True	ATTAAA	-13	NA	36134255	36143673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_36134394_36134698_36134756_36135018_36135095_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
ENSMUSG00000059714.14_7	chr17	+	1785	12	ISM	ENSMUSG00000059714.14	ENSMUST00000001569.15	1825	13	335	10	16	-10	3prime_fragment	FALSE	canonical	3	176	junction_7	12.1464887964648	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGGTTATCTATACTTC	NA	False	NA	15	True	ATTAAA	-13	NA	36134456	36143673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
ENSMUSG00000059734.8_0	chr19	-	963	7	FSM	ENSMUSG00000059734.8	ENSMUST00000075092.8	983	7	17	3	17	0	multi-exon	FALSE	canonical	3	209	junction_6	645.480290601933	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTGTTGTGTTGT	NA	False	NA	-8	True	CATAAA	-15	NA	3962717	3958869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962466
ENSMUSG00000059734.8_1	chr19	-	752	7	FSM	ENSMUSG00000059734.8	ENSMUST00000237341.2	780	7	25	3	-15	0	multi-exon	FALSE	canonical	3	1174	junction_6	307.096076171611	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTGTTGTGTTGT	NA	False	NA	-8	True	CATAAA	-15	NA	3962749	3958869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962709
ENSMUSG00000059734.8_8	chr19	-	714	6	ISM	ENSMUSG00000059734.8	ENSMUST00000236801.2	1005	7	740	7	740	0	3prime_fragment	FALSE	canonical	3	1612	junction_1	163.614180314544	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTGTTGTGTTGT	NA	False	NA	-8	True	CATAAA	-15	NA	3961748	3958869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688
ENSMUSG00000059743.13_1	chr3	-	1161	10	FSM	ENSMUSG00000059743.13	ENSMUST00000081848.13	1237	10	72	4	1	-4	multi-exon	FALSE	canonical	3	1662	junction_9	235.997175124336	1140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCTGTGGTTTTATTC	NA	False	NA	-7	True	AATAAA	-10	NA	89009194	89000898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
ENSMUSG00000059743.13_2	chr3	-	1138	9	ISM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	1054	4	481	-4	3prime_fragment	FALSE	canonical	3	2209	junction_1	106.556323134763	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCTGTGGTTTTATTC	NA	False	NA	-7	True	AATAAA	-10	NA	89008141	89000898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975
ENSMUSG00000059743.13_3	chr3	-	1374	11	FSM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	4	4	4	-4	multi-exon	FALSE	canonical	3	68	junction_10	899.425283166979	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCTGTGGTTTTATTC	NA	False	NA	-7	True	AATAAA	-10	NA	89009191	89000898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227_89008444_89009168
ENSMUSG00000059751.8_0	chr13	+	861	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	-23	-43	-23	43	mono-exon	FALSE	NA	NA	NA	NA	NA	1652	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCAAAAAAAAAAATGCAGT	NA	False	NA	NA	False	AATAAA	-15	NA	108807113	108807974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_108807100_108808000
ENSMUSG00000059772.13_0	chr7	-	611	1	ISM	ENSMUSG00000059772.13	ENSMUST00000144897.2	3152	6	4473	1233	4328	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAATAATAAAGTTAA	9460	False	NA	NA	False	NA	NA	NA	126290483	126289872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126289900_126290500
ENSMUSG00000059772.13_1	chr7	-	1915	6	FSM	ENSMUSG00000059772.13	ENSMUST00000144897.2	3152	6	22	1215	-17	-5	multi-exon	FALSE	canonical	3	82	junction_4	7.98498591107085	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAAAAACAAAAGTTCT	5009	False	NA	NA	False	NA	NA	NA	126294934	126289854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126291924_126291977_126294596
ENSMUSG00000059772.13_12	chr7	-	1378	4	ISM	ENSMUSG00000059772.13	ENSMUST00000142337.7	1390	5	3194	-417	3109	-23	3prime_fragment	FALSE	canonical	3	97	junction_2	2.49443825784929	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAATAATAAAGTTAA	8241	False	NA	NA	False	NA	NA	NA	126291702	126289872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126290828_126290910_126290996_126291099_126291228_126291492
ENSMUSG00000059772.13_19	chr7	-	2266	4	NIC	ENSMUSG00000059772.13	novel	2062	5	NA	NA	1	-5	intron_retention	FALSE	canonical	3	82	junction_2	7.93025150224688	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAAAAACAAAAGTTCT	5027	False	NA	NA	False	NA	NA	NA	126294916	126289854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126290828_126290910_126291832_126291924_126291977_126294596
ENSMUSG00000059772.13_2	chr7	-	2081	4	NIC	ENSMUSG00000059772.13	novel	1567	5	NA	NA	4	-5	intron_retention	FALSE	canonical	3	82	junction_2	8.83176086632785	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAAAAACAAAAGTTCT	5030	False	NA	NA	False	NA	NA	NA	126294913	126289854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126291228_126291492_126291832_126291924_126291977_126294596
ENSMUSG00000059772.13_4	chr7	-	2382	3	NIC	ENSMUSG00000059772.13	novel	2062	5	NA	NA	7	-5	intron_retention	FALSE	canonical	3	82	junction_1	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAAAAACAAAAGTTCT	4994	False	NA	NA	False	NA	NA	NA	126294949	126289854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126291832_126291924_126291977_126294596
ENSMUSG00000059772.13_5	chr7	-	1046	2	ISM	ENSMUSG00000059772.13	ENSMUST00000084586.9	2062	5	3839	-6	3839	6	3prime_fragment	FALSE	canonical	3	101	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTCTAGCCGGGCGTG	8971	False	NA	NA	False	ATTAAA	-4	NA	126290972	126289843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126290828_126290910
ENSMUSG00000059772.13_9	chr7	-	1859	5	FSM	ENSMUSG00000059772.13	ENSMUST00000142337.7	1390	5	-37	-432	-16	-8	multi-exon	FALSE	canonical	3	27	junction_4	31.8276609256791	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTAAATTAAAAACAAAAGT	5010	False	NA	NA	False	NA	NA	NA	126294933	126289857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126294596
ENSMUSG00000059775.6_1	chr8	-	434	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	-5	20	-5	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	108166216	108165782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_108165800_108166200
ENSMUSG00000059791.15_0	chr17	+	1423	4	FSM	ENSMUSG00000059791.15	ENSMUST00000074259.15	1466	4	38	5	18	-5	multi-exon	FALSE	canonical	3	236	junction_1	13.2748718344933	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATATCCACTTGTCTGTCC	4627	False	NA	19	True	AATAAA	-13	NA	36172247	36176289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36172410_36174330_36174528_36175003_36175181_36175402
ENSMUSG00000059791.15_1	chr17	+	1228	3	FSM	ENSMUSG00000059791.15	ENSMUST00000172931.2	302	3	-135	-791	13	-8	multi-exon	FALSE	canonical	1	2	junction_1	132.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGATATCCACTTGTCTG	4622	False	NA	16	True	AATAAA	-10	NA	36172242	36176286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36172410_36175003_36175181_36175402
ENSMUSG00000059791.15_2	chr17	+	3178	2	ISM	ENSMUSG00000059791.15	ENSMUST00000172931.2	302	3	514	-796	514	-3	3prime_fragment	FALSE	canonical	3	267	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCCACTTGTCTGTCCAT	5271	False	NA	21	True	AATAAA	-15	NA	36172891	36176291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_36175181_36175402
ENSMUSG00000059796.17_7	chr11	-	1761	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	4	9	2	-8	multi-exon	TRUE	canonical	3	9657	junction_10	1402.57834362292	11330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGCCTGTTTGGGCTTC	NA	False	NA	55	True	AATAAA	-10	NA	69563139	69557770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ENSMUSG00000059810.19_0	chr4	+	2454	18	FSM	ENSMUSG00000059810.19	ENSMUST00000098031.10	2072	18	-91	-291	-91	291	multi-exon	FALSE	canonical	3	19	junction_17	16.975863182644	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGCAAGGGTCTGTACA	NA	False	NA	NA	False	AATAAA	-20	NA	62501746	62575967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525845_62525915_62533537_62533599_62534710_62534802_62535311_62535368_62542081_62542164_62543333_62543440_62543978_62544331_62544728_62544769_62549360_62549558_62552682_62552767_62558953_62559066_62564920_62564965_62570950_62571074_62575339
ENSMUSG00000059810.19_1	chr4	+	4302	23	NIC	ENSMUSG00000059810.19	novel	2072	18	NA	NA	-92	-5	combination_of_known_junctions	TRUE	canonical	2	39	junction_18	14.1957973061405	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCAGTCTCTGTGTATTC	NA	False	NA	-4	True	AATAAA	-16	NA	62501745	62621250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525845_62525915_62533537_62533599_62534710_62534802_62535311_62535368_62542081_62542164_62543333_62543440_62543978_62544331_62544728_62544769_62549360_62549558_62552682_62552767_62558953_62559066_62564920_62564965_62570950_62571074_62607735_62608864_62615507_62615570_62618234_62618337_62618590_62618653_62619270_62619438_62620296
ENSMUSG00000059810.19_32	chr4	+	2549	7	ISM	ENSMUSG00000059810.19	ENSMUST00000144489.8	2911	10	18387	3	195	-3	3prime_fragment	FALSE	canonical	2	39	junction_2	6.91415617089718	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTCTCTGTGTATTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	62571001	62621252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_62571074_62607735_62608864_62615507_62615570_62618234_62618337_62618590_62618653_62619270_62619438_62620296
ENSMUSG00000059810.19_34	chr4	+	2623	7	NIC	ENSMUSG00000059810.19	novel	496	2	NA	NA	23	-5	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	17.9071680247511	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCAGTCTCTGTGTATTC	NA	False	NA	-4	True	AATAAA	-16	NA	62581881	62621250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_62582030_62607735_62608864_62615507_62615570_62618234_62618337_62618590_62618653_62619270_62619438_62620296
ENSMUSG00000059811.14_1	chr17	-	2868	13	FSM	ENSMUSG00000059811.14	ENSMUST00000068282.7	3618	13	71	679	-1	-6	multi-exon	FALSE	canonical	3	301	junction_5	41.6619997386374	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAACGAAAGTTGTGATT	3822	False	NA	NA	False	ATTAAA	-15	NA	80203481	80156497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
ENSMUSG00000059811.14_21	chr17	-	2792	12	NIC	ENSMUSG00000059811.14	novel	3618	13	NA	NA	-1	-10	combination_of_known_splicesites	FALSE	canonical	3	61	junction_2	96.5253360308462	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATAAAACGAAAGTTGT	3822	False	NA	NA	False	ATTAAA	-11	NA	80203481	80156501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_80157708_80159953_80160386_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
ENSMUSG00000059811.14_22	chr17	-	2625	12	FSM	ENSMUSG00000059811.14	ENSMUST00000112437.8	3371	12	71	675	-1	-4	multi-exon	TRUE	canonical	3	19	junction_11	103.456941975757	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACGAAAGTTGTGATTCT	3822	False	NA	NA	False	ATTAAA	-17	NA	80203481	80156495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80203337
ENSMUSG00000059811.14_26	chr17	-	3381	13	NIC	ENSMUSG00000059811.14	novel	3618	13	NA	NA	-1	-8	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	105.266988599888	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAAAACGAAAGTTGTGA	3822	False	NA	NA	False	ATTAAA	-13	NA	80203481	80156499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_80158223_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
ENSMUSG00000059811.14_8	chr17	-	5114	12	NIC	ENSMUSG00000059811.14	novel	3618	13	NA	NA	-1	-6	intron_retention	FALSE	canonical	3	301	junction_4	43.1156430740161	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAACGAAAGTTGTGATT	3822	False	NA	NA	False	ATTAAA	-15	NA	80203481	80156497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
ENSMUSG00000059816.6_1	chr4	-	693	3	FSM	ENSMUSG00000059816.6	ENSMUST00000053157.7	593	3	-90	-10	-90	10	multi-exon	FALSE	canonical	3	46	junction_2	6	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGGAATCTCTTTTTT	NA	False	NA	-1	True	AATAAA	-16	NA	108240636	108224963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108225239_108234543_108234684_108240358
ENSMUSG00000059820.15_0	chr9	-	1981	1	ISM	ENSMUSG00000059820.15	ENSMUST00000131351.8	3316	6	10240	4	10040	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTGCTCTGTTACTTT	NA	False	NA	-7	True	AATAAA	-13	NA	50518524	50516543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_50516500_50518500
ENSMUSG00000059820.15_19	chr9	-	2940	4	ISM	ENSMUSG00000059820.15	ENSMUST00000171462.8	3339	7	5045	0	4845	0	3prime_fragment	FALSE	canonical	3	103	junction_3	13.4742552876052	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTGCTCTGTTACTTT	4951	False	NA	-7	True	AATAAA	-13	NA	50523719	50516543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676
ENSMUSG00000059820.15_2	chr9	-	2457	6	NNC	ENSMUSG00000059820.15	novel	3316	6	NA	NA	-81	-750	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	45.4990109782619	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGTTGGCCAGATGTGC	8	True	NA	NA	False	AATAAA	-18	NA	50528662	50517293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_50519234_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50528527
ENSMUSG00000059820.15_3	chr9	-	3122	6	FSM	ENSMUSG00000059820.15	ENSMUST00000131351.8	3316	6	188	6	5	-2	multi-exon	FALSE	canonical	3	44	junction_5	32.2800247831379	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATTTGCTCTGTTACT	94	False	NA	-9	True	AATAAA	-11	NA	50528576	50516545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50528527
ENSMUSG00000059820.15_4	chr9	-	3404	6	FSM	ENSMUSG00000059820.15	ENSMUST00000147671.2	1225	6	28	-2207	28	-250	multi-exon	FALSE	canonical	3	45	junction_5	31.9023510105447	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCATGCCTTAGGCTAAG	134	False	NA	-5	True	AATAAA	-15	NA	50528536	50516793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50527957
ENSMUSG00000059820.15_6	chr9	-	3076	5	ISM	ENSMUSG00000059820.15	ENSMUST00000171462.8	3339	7	1904	0	1704	0	3prime_fragment	FALSE	canonical	3	103	junction_3	11.8189466535728	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTGCTCTGTTACTTT	1810	False	NA	-7	True	AATAAA	-13	NA	50526860	50516543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782
ENSMUSG00000059824.13_0	chr7	+	1246	3	FSM	ENSMUSG00000059824.13	ENSMUST00000211513.2	1156	3	-181	91	0	-5	multi-exon	FALSE	canonical	3	23	junction_1	20	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTAGCCTTCCCCCA	NA	False	NA	NA	False	AATACA	-15	NA	45354511	45359447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45355187_45357683_45357896_45359088
ENSMUSG00000059824.13_1	chr7	+	1668	4	FSM	ENSMUSG00000059824.13	ENSMUST00000080885.12	1837	4	-3	172	-3	3	multi-exon	FALSE	canonical	3	28	junction_1	14.613540144522	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTCCCCCACCTCCCTT	NA	False	NA	NA	False	AATACA	-23	NA	45354508	45359455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45355187_45356029_45356441_45357683_45357896_45359088
ENSMUSG00000059824.13_2	chr7	+	1718	2	FSM	ENSMUSG00000059824.13	ENSMUST00000211748.2	1732	2	9	5	9	-5	multi-exon	FALSE	canonical	3	63	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTAGCCTTCCCCCA	NA	False	NA	NA	False	AATACA	-15	NA	45356536	45359447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45357896_45359088
ENSMUSG00000059824.13_3	chr7	+	2496	3	NIC	ENSMUSG00000059824.13	novel	1837	4	NA	NA	-7	-16	intron_retention	FALSE	canonical	3	39	junction_1	12	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTTTTAAGAAAAAGCTA	NA	False	NA	NA	False	AATACA	-4	NA	45354504	45359436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45356441_45357683_45357896_45359088
ENSMUSG00000059834.13_0	chr3	-	2989	21	FSM	ENSMUSG00000059834.13	ENSMUST00000026866.15	3005	21	11	5	11	-5	multi-exon	FALSE	canonical	3	23	junction_17	7.74919350642375	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTATGTTGTCATGTA	NA	False	NA	NA	False	AATAAA	-13	NA	41696938	41581159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_41581670_41583952_41584049_41586087_41586167_41601879_41602077_41611638_41611832_41616006_41616153_41618386_41618462_41621545_41621618_41625819_41625919_41629762_41629941_41636130_41636223_41636716_41636808_41657820_41657892_41663903_41663970_41665517_41665641_41672163_41672300_41681527_41681584_41684725_41684799_41685295_41685355_41688602_41688671_41696429
ENSMUSG00000059834.13_12	chr3	-	2214	14	NIC	ENSMUSG00000059834.13	novel	3005	21	NA	NA	94	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	13.4128790885398	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATGTTGTCATGTAT	NA	False	NA	NA	False	AATAAA	-14	NA	41696746	41581158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_41581670_41583952_41584049_41586087_41586167_41601879_41602077_41611638_41611832_41616006_41616153_41618386_41618462_41621545_41621618_41625819_41625919_41629762_41629941_41636130_41636223_41636716_41636808_41688602_41688671_41696429
ENSMUSG00000059839.10_2	chr13	-	3680	4	NIC	ENSMUSG00000059839.10	novel	3744	4	NA	NA	11	-1	intron_retention	FALSE	canonical	0	0	junction_3	6.59966329107444	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGTGTTCGTGTGGTTTG	5427	False	NA	-1	True	NA	NA	NA	67632361	67619632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_67623071_67629288_67629382_67629837_67629965_67632339
ENSMUSG00000059839.10_3	chr13	-	2918	4	FSM	ENSMUSG00000059839.10	ENSMUST00000019572.9	3744	4	5	821	5	-821	multi-exon	FALSE	canonical	3	10	junction_1	2.44948974278318	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCAGAAAGTGTTTATT	5449	False	NA	NA	False	AATAAA	-19	NA	67632339	67620452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67623071_67629288_67629382_67629837_67629965_67632259
ENSMUSG00000059839.10_6	chr13	-	933	1	ISM	ENSMUSG00000059839.10	ENSMUST00000019572.9	3744	4	11779	1	11766	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGTGTTCGTGTGGTTTG	NA	False	NA	-1	True	NA	NA	NA	67620565	67619632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67619600_67620600
ENSMUSG00000059842.13_0	chr2	+	3237	15	FSM	ENSMUSG00000059842.13	ENSMUST00000081926.13	3299	15	52	10	-7	-10	multi-exon	FALSE	canonical	2	3	junction_5	3.22062866217014	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCACCCAGGCCTGAGTC	5774	False	NA	15	True	AATAAA	-25	NA	154455268	154488731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154455323_154463672_154463784_154466774_154466972_154468697_154468848_154469807_154470054_154470719_154470916_154472328_154472420_154474198_154474390_154476006_154476198_154479933_154480143_154483235_154483333_154483901_154484035_154485408_154485521_154485706_154485778_154487543
ENSMUSG00000059842.13_6	chr2	+	2249	9	ISM	ENSMUSG00000059842.13	ENSMUST00000109702.2	3162	15	17073	-33	17073	-10	3prime_fragment	FALSE	canonical	2	3	junction_6	3.6721077053921	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCACCCAGGCCTGAGTC	84	False	NA	15	True	AATAAA	-25	NA	154472362	154488731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_154472420_154474198_154474390_154476006_154476198_154479933_154480143_154483235_154483333_154483901_154484035_154485408_154485521_154485706_154485778_154487543
ENSMUSG00000059842.13_9	chr2	+	2158	8	ISM	ENSMUSG00000059842.13	ENSMUST00000109702.2	3162	15	18943	-33	18943	-10	3prime_fragment	FALSE	canonical	2	3	junction_5	3.8703477668983	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCACCCAGGCCTGAGTC	1954	False	NA	15	True	AATAAA	-25	NA	154474232	154488731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_154474390_154476006_154476198_154479933_154480143_154483235_154483333_154483901_154484035_154485408_154485521_154485706_154485778_154487543
ENSMUSG00000059851.16_1	chr7	+	2201	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	-26	2	3	-2	multi-exon	FALSE	canonical	3	456	junction_1	88.3026578025826	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGAGGTTTTTTTTTTTTT	627	False	NA	14	True	ATTAAA	-15	NA	4743157	4750511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ENSMUSG00000059851.16_10	chr7	+	2534	8	NIC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	2	-1	intron_retention	FALSE	canonical	3	456	junction_1	90.2970155675599	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGGTTTTTTTTTTTTTT	626	False	NA	15	True	ATTAAA	-16	NA	4743156	4750512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_4743239_4744778_4744981_4745120_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ENSMUSG00000059851.16_13	chr7	+	2771	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108582.10	2774	9	1	2	1	-2	multi-exon	FALSE	canonical	3	73	junction_1	203.174647778703	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGAGGTTTTTTTTTTTTT	636	False	NA	14	True	ATTAAA	-15	NA	4743166	4750511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_4743818_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ENSMUSG00000059851.16_3	chr7	+	2158	9	FSM	ENSMUSG00000059851.16	ENSMUST00000098853.9	2189	9	30	1	-8	-1	multi-exon	FALSE	canonical	3	38	junction_1	214.33585648463	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGGTTTTTTTTTTTTTT	613	False	NA	15	True	ATTAAA	-16	NA	4743143	4750512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_4743181_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ENSMUSG00000059851.16_5	chr7	+	3731	8	NIC	ENSMUSG00000059851.16	novel	2774	9	NA	NA	3	-1	intron_retention	FALSE	canonical	3	570	junction_2	59.1256013474187	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGGTTTTTTTTTTTTTT	638	False	NA	15	True	ATTAAA	-16	NA	4743168	4750512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ENSMUSG00000059851.16_6	chr7	+	4073	7	NIC	ENSMUSG00000059851.16	novel	2774	9	NA	NA	3	-1	intron_retention	FALSE	canonical	3	599	junction_4	48.5297732210742	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGGTTTTTTTTTTTTTT	627	False	NA	15	True	ATTAAA	-16	NA	4743157	4750512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_4744981_4745120_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ENSMUSG00000059854.9_11	chr8	+	5462	19	NNC	ENSMUSG00000059854.9	novel	15783	87	NA	NA	69602	-50644	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	5.33333333333333	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTGGGATTAAACT	NA	False	NA	NA	False	NA	NA	NA	111240722	111286241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_111240920_111241461_111241636_111245709_111245934_111249703_111249842_111252075_111252260_111254538_111254681_111257680_111257850_111259307_111259926_111261796_111262019_111264936_111265146_111265350_111265534_111266350_111266471_111268152_111268313_111268427_111268601_111276220_111276420_111277904_111278005_111282163_111282264_111283627_111283797_111284260
ENSMUSG00000059854.9_14	chr8	+	5459	19	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	247114	50644	69602	-50644	internal_fragment	FALSE	canonical	3	19	junction_12	4.32370725702428	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTGGGATTAAACT	NA	False	NA	NA	False	NA	NA	NA	111240722	111286241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111240920_111241461_111241636_111245712_111245934_111249703_111249842_111252075_111252260_111254538_111254681_111257680_111257850_111259307_111259926_111261796_111262019_111264936_111265146_111265350_111265534_111266350_111266471_111268152_111268313_111268427_111268601_111276220_111276420_111277904_111278005_111282163_111282264_111283627_111283797_111284260
ENSMUSG00000059854.9_19	chr8	+	4810	16	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	256152	50644	78640	-50644	internal_fragment	FALSE	canonical	3	19	junction_9	4.44222166638871	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTGGGATTAAACT	NA	False	NA	NA	False	NA	NA	NA	111249760	111286241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111249842_111252075_111252260_111254538_111254681_111257680_111257850_111259307_111259926_111261796_111262019_111264936_111265146_111265350_111265534_111266350_111266471_111268152_111268313_111268427_111268601_111276220_111276420_111277904_111278005_111282163_111282264_111283627_111283797_111284260
ENSMUSG00000059854.9_2	chr8	+	11306	58	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	233557	7	56045	-7	3prime_fragment	TRUE	canonical	1	1	junction_32	9.8213340563779	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAACAGATCTACATTCA	NA	False	NA	NA	False	ATTAAA	-13	NA	111227165	111336878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111227451_111229557_111229686_111231800_111231932_111232374_111232512_111232725_111232854_111233059_111233252_111233512_111233663_111235515_111235756_111237467_111237631_111239623_111239798_111240745_111240920_111241461_111241636_111245712_111245934_111249703_111249842_111252075_111252260_111254538_111254681_111257680_111257850_111259307_111259926_111261796_111262019_111264936_111265146_111265350_111265534_111266350_111266471_111268152_111268313_111268427_111268601_111276220_111276420_111277904_111278005_111282163_111282264_111283627_111283797_111284260_111284497_111287654_111287773_111290427_111290633_111291599_111291836_111293230_111293383_111293532_111293723_111295956_111296060_111296243_111296532_111298442_111298586_111301472_111301692_111304782_111304944_111306180_111306279_111307302_111307499_111308591_111308805_111309298_111309438_111310533_111310700_111312654_111312803_111313665_111313874_111314267_111314490_111316081_111316252_111319240_111319440_111320298_111320458_111321849_111322128_111324418_111324639_111325590_111325804_111326873_111327038_111327869_111328021_111329793_111330025_111334316_111334542_111336206
ENSMUSG00000059854.9_21	chr8	+	4458	13	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	264017	50644	86505	-50644	internal_fragment	FALSE	canonical	3	19	junction_6	4.68078222332787	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTGGGATTAAACT	NA	False	NA	NA	False	NA	NA	NA	111257625	111286241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111257850_111259307_111259926_111261796_111262019_111264936_111265146_111265350_111265534_111266350_111266471_111268152_111268313_111268427_111268601_111276220_111276420_111277904_111278005_111282163_111282264_111283627_111283797_111284260
ENSMUSG00000059854.9_23	chr8	+	3797	12	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	266136	50644	88624	-50644	internal_fragment	FALSE	canonical	3	19	junction_5	4.76904619949236	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTGGGATTAAACT	442	False	NA	NA	False	NA	NA	NA	111259744	111286241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111259926_111261796_111262019_111264936_111265146_111265350_111265534_111266350_111266471_111268152_111268313_111268427_111268601_111276220_111276420_111277904_111278005_111282163_111282264_111283627_111283797_111284260
ENSMUSG00000059854.9_25	chr8	+	3351	10	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	271370	50645	93858	-50645	internal_fragment	FALSE	canonical	3	19	junction_3	5.14241620684717	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAATTGGGATTAAAC	5676	False	NA	NA	False	NA	NA	NA	111264978	111286240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111265146_111265350_111265534_111266350_111266471_111268152_111268313_111268427_111268601_111276220_111276420_111277904_111278005_111282163_111282264_111283627_111283797_111284260
ENSMUSG00000059854.9_27	chr8	+	2248	3	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	288557	50644	111045	-50644	internal_fragment	FALSE	canonical	3	21	junction_2	8	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTGGGATTAAACT	NA	False	NA	NA	False	NA	NA	NA	111282165	111286241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111282264_111283627_111283797_111284260
ENSMUSG00000059854.9_36	chr8	+	2053	8	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	247114	76750	69602	45882	internal_fragment	FALSE	canonical	3	20	junction_2	3.48173074484398	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTGACAACACTAGTTC	NA	False	NA	NA	False	ATTAAA	-24	NA	111240722	111260135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111240920_111241461_111241636_111245712_111245934_111249703_111249842_111252075_111252260_111254538_111254681_111257680_111257850_111259307
ENSMUSG00000059854.9_55	chr8	+	1391	5	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	256154	76761	78642	45871	internal_fragment	FALSE	canonical	3	22	junction_4	3.26917420765551	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGGTCTTTAATATTGAC	NA	False	NA	NA	False	ATTAAA	-13	NA	111249762	111260124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111249842_111252075_111252260_111254538_111254681_111257680_111257850_111259307
ENSMUSG00000059854.9_58	chr8	+	6368	32	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	288579	7	111067	-7	3prime_fragment	FALSE	canonical	1	1	junction_6	6.75742933345737	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAACAGATCTACATTCA	NA	False	NA	NA	False	ATTAAA	-13	NA	111282187	111336878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111282264_111283627_111283797_111284260_111284497_111287654_111287773_111290427_111290633_111291599_111291836_111293230_111293383_111293532_111293723_111295956_111296060_111296243_111296532_111298442_111298586_111301472_111301692_111304782_111304944_111306180_111306279_111307302_111307499_111308591_111308805_111309298_111309438_111310533_111310700_111312654_111312803_111313665_111313874_111314267_111314490_111316081_111316252_111319240_111319440_111320298_111320458_111321849_111322128_111324418_111324639_111325590_111325804_111326873_111327038_111327869_111328021_111329793_111330025_111334316_111334542_111336206
ENSMUSG00000059854.9_8	chr8	+	7156	29	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	233565	50644	56053	-50644	internal_fragment	FALSE	canonical	1	5	junction_3	9.2493794607078	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTGGGATTAAACT	NA	False	NA	NA	False	NA	NA	NA	111227173	111286241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_111227451_111229557_111229686_111231800_111231932_111232374_111232512_111232725_111232854_111233059_111233252_111233512_111233663_111235515_111235756_111237467_111237631_111239623_111239798_111240745_111240920_111241461_111241636_111245712_111245934_111249703_111249842_111252075_111252260_111254538_111254681_111257680_111257850_111259307_111259926_111261796_111262019_111264936_111265146_111265350_111265534_111266350_111266471_111268152_111268313_111268427_111268601_111276220_111276420_111277904_111278005_111282163_111282264_111283627_111283797_111284260
ENSMUSG00000059866.14_1	chr5	-	2171	5	NIC	ENSMUSG00000059866.14	novel	1987	6	NA	NA	4	0	intron_retention	FALSE	canonical	3	117	junction_4	10.0623058987491	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671331	34653430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_34654295_34656523_34657081_34658251_34658342_34660880_34661172_34670962
ENSMUSG00000059866.14_11	chr5	-	4691	4	NIC	ENSMUSG00000059866.14	novel	1987	6	NA	NA	-7	-2	intron_retention	FALSE	canonical	3	117	junction_3	5.31245915016974	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTCTGAGAGCTGGGCTG	NA	False	NA	-12	True	AATAAA	-17	NA	34671314	34653432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_34654295_34656523_34657081_34658251_34661172_34670962
ENSMUSG00000059866.14_13	chr5	-	1150	2	ISM	ENSMUSG00000059866.14	ENSMUST00000030991.14	2022	7	14498	0	2153	0	3prime_fragment	FALSE	canonical	3	123	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	3770	False	NA	-10	True	AATAAA	-19	NA	34656809	34653430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_34654295_34656523
ENSMUSG00000059866.14_2	chr5	-	1982	6	FSM	ENSMUSG00000059866.14	ENSMUST00000087737.10	1987	6	5	0	5	0	multi-exon	FALSE	canonical	3	112	junction_2	11.160645142643	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671330	34653430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_34654295_34656523_34656644_34656831_34657081_34658251_34658342_34660880_34661172_34670962
ENSMUSG00000059878.13_0	chr6	-	2246	2	FSM	ENSMUSG00000059878.13	ENSMUST00000079749.6	3187	2	35	906	35	0	multi-exon	FALSE	canonical	3	68	junction_1	0	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTACTATCTATTTTACT	NA	False	NA	-5	True	AATAAA	-18	NA	116605925	116601882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_116604095_116605891
ENSMUSG00000059878.13_1	chr6	-	2362	2	FSM	ENSMUSG00000059878.13	ENSMUST00000057540.6	2375	2	-5	18	-5	0	multi-exon	FALSE	canonical	3	18	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTACTATCTATTTTACT	NA	False	NA	-5	True	AATAAA	-18	NA	116605888	116601882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_116604095_116605738
ENSMUSG00000059878.13_2	chr6	-	2213	1	ISM	ENSMUSG00000059878.13	ENSMUST00000079749.6	3187	2	1866	905	-434	1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACTATCTATTTTACTT	NA	False	NA	-4	True	AATAAA	-19	NA	116604094	116601881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_116601900_116604100
ENSMUSG00000059883.17_11	chr15	+	1408	6	ISM	ENSMUSG00000059883.17	ENSMUST00000074936.10	2831	12	10100	6179	10071	5174	internal_fragment	FALSE	canonical	3	22	junction_1	4.38178046004133	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAGAGCTTTGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	94451623	94460008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326
ENSMUSG00000059883.17_2	chr15	+	1594	12	FSM	ENSMUSG00000059883.17	ENSMUST00000074936.10	2831	12	-13	1250	-13	-1250	multi-exon	FALSE	canonical	1	2	junction_11	11.4357710498301	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTTTTTTTTTTTTA	NA	False	NA	NA	False	AATAAA	-1	NA	94441510	94464937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_94441708_94445716_94445885_94449683_94449830_94451715_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94460898_94460962_94464619_94464779_94464894
ENSMUSG00000059883.17_5	chr15	+	1781	9	ISM	ENSMUSG00000059883.17	ENSMUST00000074936.10	2831	12	33	6179	4	5174	5prime_fragment	FALSE	canonical	2	7	junction_3	9.35330823826522	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAGAGCTTTGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	94441556	94460008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_94441708_94445716_94445885_94449683_94449830_94451715_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326
ENSMUSG00000059883.17_9	chr15	+	1805	9	ISM	ENSMUSG00000059883.17	ENSMUST00000074936.10	2831	12	10105	615	10076	-615	3prime_fragment	FALSE	canonical	1	2	junction_8	12.598983093885	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGACATGAGTGGAATCTAT	NA	False	NA	5	True	NA	NA	NA	94451628	94465572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94460898_94460962_94464619_94464779_94464894
ENSMUSG00000059890.17_1	chr9	-	1450	1	ISM	ENSMUSG00000059890.17	ENSMUST00000117506.9	6039	20	40998	4	40945	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCCTTGTTAGTTCTTC	NA	False	NA	-4	True	AATAAA	-15	NA	44835878	44834428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44834400_44835900
ENSMUSG00000059890.17_12	chr9	-	4654	20	NIC	ENSMUSG00000059890.17	novel	3415	20	NA	NA	1	387	intron_retention	FALSE	canonical	3	40	junction_10	10.1318181789938	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAACAAAAATGTCCTGCC	5352	False	NA	NA	False	NA	NA	NA	44876846	44836758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44837274_44840959_44841118_44843639_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
ENSMUSG00000059890.17_13	chr9	-	3772	21	NIC	ENSMUSG00000059890.17	novel	6039	20	NA	NA	-6	387	combination_of_known_junctions	FALSE	canonical	3	18	junction_18	13.0877805605076	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAACAAAAATGTCCTGCC	5369	False	NA	NA	False	NA	NA	NA	44876829	44836758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44837274_44840959_44841118_44843639_44843788_44844595_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864414_44871276_44871438_44874634_44874731_44876782
ENSMUSG00000059890.17_17	chr9	-	3252	18	NIC	ENSMUSG00000059890.17	novel	3486	19	NA	NA	0	-101	combination_of_known_junctions	FALSE	canonical	3	40	junction_8	10.0238469985589	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACTGTTTGTGAAAATAT	5351	False	NA	NA	False	GATAAA	-14	NA	44876847	44844369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
ENSMUSG00000059890.17_19	chr9	-	3195	18	NIC	ENSMUSG00000059890.17	novel	3486	19	NA	NA	0	-101	combination_of_known_junctions	FALSE	canonical	3	18	junction_15	13.1741069308551	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACTGTTTGTGAAAATAT	5351	False	NA	NA	False	GATAAA	-14	NA	44876847	44844369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864414_44871276_44871438_44874634_44874731_44876782
ENSMUSG00000059890.17_2	chr9	-	3846	21	NIC	ENSMUSG00000059890.17	novel	3415	20	NA	NA	1	387	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	10.7396461766671	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAACAAAAATGTCCTGCC	5352	False	NA	NA	False	NA	NA	NA	44876846	44836758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_44837274_44840959_44841118_44843639_44843788_44844595_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
ENSMUSG00000059890.17_30	chr9	-	2474	9	FSM	ENSMUSG00000059890.17	ENSMUST00000138559.9	3374	9	24	876	0	-876	multi-exon	FALSE	canonical	3	42	junction_4	11.548132965982	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACTAAAAACACTTATT	5346	False	NA	NA	False	AATAAA	-9	NA	44876852	44858228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
ENSMUSG00000059890.17_33	chr9	-	4545	20	FSM	ENSMUSG00000059890.17	ENSMUST00000117549.8	3415	20	52	-1182	1	1182	multi-exon	FALSE	canonical	2	4	junction_19	14.0720347023741	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAATACTTCTCTCTGG	5352	False	NA	NA	False	ATTAAA	-13	NA	44876846	44835963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44837274_44840959_44841118_44843639_44843788_44844595_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44876782
ENSMUSG00000059895.14_14	chr15	+	1720	6	FSM	ENSMUSG00000059895.14	ENSMUST00000053232.8	3260	6	-1	1541	-1	-1	multi-exon	FALSE	canonical	3	41	junction_1	28.8124972885031	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGTGTGTGAAGAGTGTT	NA	False	NA	18	True	AATAAA	-12	NA	73620221	73629074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_73620315_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
ENSMUSG00000059895.14_16	chr15	+	1305	5	ISM	ENSMUSG00000059895.14	ENSMUST00000053232.8	3260	6	3078	1540	3078	0	3prime_fragment	FALSE	canonical	3	97	junction_1	9.24662100445346	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTGTGTGAAGAGTGTTA	NA	False	NA	19	True	AATAAA	-13	NA	73623300	73629075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
ENSMUSG00000059895.14_8	chr15	+	1683	6	FSM	ENSMUSG00000059895.14	ENSMUST00000230177.2	1680	6	-4	1	-4	0	multi-exon	FALSE	canonical	3	26	junction_1	34.6028900527109	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTGTGTGAAGAGTGTTA	NA	False	NA	19	True	AATAAA	-13	NA	73596642	73629075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_73596698_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
ENSMUSG00000059897.6_0	chr8	+	2971	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	25	5	15	-5	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGCCATGACCCTTGTC	7225	False	NA	22	True	AATAAA	-13	NA	69661714	69683183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
ENSMUSG00000059897.6_1	chr8	+	2856	5	NNC	ENSMUSG00000059897.6	novel	3001	4	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	40.4722126896961	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGCCATGACCCTTGTC	7221	False	NA	22	True	AATAAA	-13	NA	69661710	69683183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494_69681653_69681771
ENSMUSG00000059897.6_16	chr8	+	2026	1	ISM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	19468	5	2163	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGCCATGACCCTTGTC	NA	False	NA	22	True	AATAAA	-13	NA	69681157	69683183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_69681200_69683200
ENSMUSG00000059900.15_15	chr6	-	868	7	FSM	ENSMUSG00000059900.15	ENSMUST00000151849.2	927	7	451	-392	109	0	multi-exon	FALSE	canonical	3	40	junction_5	15.4344492037203	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115711803	115706101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770
ENSMUSG00000059900.15_17	chr6	-	1187	11	FSM	ENSMUSG00000059900.15	ENSMUST00000170625.8	843	11	84	-428	39	0	multi-exon	FALSE	canonical	2	4	junction_8	22.4686448189471	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAAAGTCGACTA	NA	False	NA	NA	False	AATAAA	-18	NA	115739287	115706103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115718501_115718634_115719270_115719349_115739233
ENSMUSG00000059900.15_2	chr6	-	1453	11	NIC	ENSMUSG00000059900.15	novel	1272	12	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	23.9501565756886	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115736216	115706101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115718501_115718634_115719270_115719349_115735898
ENSMUSG00000059900.15_23	chr6	-	1007	4	ISM	ENSMUSG00000059900.15	ENSMUST00000127728.4	894	8	3442	-2	3442	0	3prime_fragment	FALSE	canonical	3	55	junction_3	10.6144555520604	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115708470	115706101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145
ENSMUSG00000059900.15_4	chr6	-	1163	11	NIC	ENSMUSG00000059900.15	novel	1272	12	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_9	20.1992574120932	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115739318	115706101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115719270_115719349_115739233
ENSMUSG00000059900.15_5	chr6	-	1190	10	NIC	ENSMUSG00000059900.15	novel	843	11	NA	NA	-49	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_8	20.2319878739914	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115739420	115706101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115719270_115719349_115739233
ENSMUSG00000059900.15_6	chr6	-	682	3	ISM	ENSMUSG00000059900.15	ENSMUST00000127728.4	894	8	3870	-2	3870	0	3prime_fragment	FALSE	canonical	3	77	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115708042	115706101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_115706646_115707396_115707460_115707967
ENSMUSG00000059900.15_7	chr6	-	1351	12	FSM	ENSMUSG00000059900.15	ENSMUST00000166254.7	811	12	-48	-492	-3	0	multi-exon	TRUE	canonical	3	12	junction_9	20.7428171377448	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115739374	115706101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115739233
ENSMUSG00000059900.15_8	chr6	-	1412	11	NIC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_10	21.936271333114	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115736232	115706101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115719270_115719349_115735898
ENSMUSG00000059900.15_9	chr6	-	1060	10	NIC	ENSMUSG00000059900.15	novel	1272	12	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_9	22.2782626713647	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115735955	115706101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115719270_115719349_115735898
ENSMUSG00000059901.13_0	chr10	-	4267	19	ISM	ENSMUSG00000059901.13	ENSMUST00000092486.11	5188	22	27400	2	27204	-2	3prime_fragment	FALSE	canonical	2	12	junction_8	3.8873012632302	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTGCCCTTGGTGTTTT	NA	False	NA	-6	True	TTTAAA	-17	NA	61081817	61032892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_61034739_61036141_61036253_61036954_61037085_61038601_61038810_61040625_61040759_61041142_61041312_61043078_61043243_61047366_61047448_61048902_61049027_61049308_61049443_61054136_61054313_61057636_61057786_61058562_61058677_61060051_61060185_61061115_61061260_61062885_61062992_61065434_61065583_61066196_61066281_61081704
ENSMUSG00000059901.13_1	chr10	-	5161	22	FSM	ENSMUSG00000059901.13	ENSMUST00000092486.11	5188	22	22	5	22	-5	multi-exon	FALSE	canonical	2	7	junction_20	4.41446807041021	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATATTGCCCTTGGTGT	4964	False	NA	-9	True	TTTAAA	-14	NA	61109195	61032895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_61034739_61036141_61036253_61036954_61037085_61038601_61038810_61040625_61040759_61041142_61041312_61043078_61043243_61047366_61047448_61048902_61049027_61049308_61049443_61054136_61054313_61057636_61057786_61058562_61058677_61060051_61060185_61061115_61061260_61062885_61062992_61065434_61065583_61066196_61066281_61081704_61081896_61085382_61085540_61106635_61107037_61108934
ENSMUSG00000059901.13_11	chr10	-	2377	5	ISM	ENSMUSG00000059901.13	ENSMUST00000092486.11	5188	22	68510	2	68314	-2	3prime_fragment	FALSE	canonical	2	13	junction_3	5.52268050859363	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTGCCCTTGGTGTTTT	NA	False	NA	-6	True	TTTAAA	-17	NA	61040707	61032892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_61034739_61036141_61036253_61036954_61037085_61038601_61038810_61040625
ENSMUSG00000059901.13_17	chr10	-	2163	4	ISM	ENSMUSG00000059901.13	ENSMUST00000092486.11	5188	22	70540	2	70344	-2	3prime_fragment	FALSE	canonical	2	13	junction_3	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTGCCCTTGGTGTTTT	NA	False	NA	-6	True	TTTAAA	-17	NA	61038677	61032892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_61034739_61036141_61036253_61036954_61037085_61038601
ENSMUSG00000059901.13_6	chr10	-	3257	8	ISM	ENSMUSG00000059901.13	ENSMUST00000092486.11	5188	22	61355	2	61159	-2	3prime_fragment	FALSE	canonical	2	13	junction_3	4.6246897303539	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTGCCCTTGGTGTTTT	NA	False	NA	-6	True	TTTAAA	-17	NA	61047862	61032892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_61034739_61036141_61036253_61036954_61037085_61038601_61038810_61040625_61040759_61041142_61041312_61043078_61043243_61047366
ENSMUSG00000059901.13_7	chr10	-	3459	13	ISM	ENSMUSG00000059901.13	ENSMUST00000092486.11	5188	22	50618	5	50422	-5	3prime_fragment	FALSE	canonical	2	12	junction_8	3.91843931516958	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATATTGCCCTTGGTGT	4485	False	NA	-9	True	TTTAAA	-14	NA	61058599	61032895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_61034739_61036141_61036253_61036954_61037085_61038601_61038810_61040625_61040759_61041142_61041312_61043078_61043243_61047366_61047448_61048902_61049027_61049308_61049443_61054136_61054313_61057636_61057786_61058562
ENSMUSG00000059920.10_0	chr16	-	2210	1	ISM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	6806	10	2301	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGCAAAATTGCCTTATA	NA	False	NA	NA	False	AATAAA	-29	NA	64584718	64582508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_64582500_64584700
ENSMUSG00000059920.10_1	chr16	-	1329	3	FSM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	224	3969	224	-3969	multi-exon	FALSE	canonical	3	170	junction_1	18.5	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCCTGTGTGCCTTAGA	NA	False	NA	-19	True	AATAAA	-19	NA	64591300	64586467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_64587357_64589286_64589526_64591099
ENSMUSG00000059920.10_2	chr16	-	5249	4	NNC	ENSMUSG00000059920.10	novel	5522	3	NA	NA	225	-17	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	90.1344674484862	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTTTTAAAAGCAAAATTG	NA	False	NA	NA	False	AATAAA	-22	NA	64591299	64582515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_64584709_64584739_64587357_64589286_64589526_64591099
ENSMUSG00000059923.14_0	chr11	-	2669	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	37	3	16	-3	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	1250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGTGTGTCTTCATTTC	4507	False	NA	-4	True	AATAAA	-16	NA	115599386	115534873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
ENSMUSG00000059923.14_2	chr11	-	1374	1	ISM	ENSMUSG00000059923.14	ENSMUST00000106499.8	2333	4	53887	2	53887	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTGTGTCTTCATTTCT	5	True	NA	-3	True	AATAAA	-17	NA	115536246	115534872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_115534900_115536200
ENSMUSG00000059939.14_1	chr4	+	5622	7	NIC	ENSMUSG00000059939.14	novel	2937	8	NA	NA	4	-2	intron_retention	FALSE	canonical	3	88	junction_1	43.7483333015861	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGTTGAGGTCATGA	8262	False	NA	18	True	NA	NA	NA	156194445	156211718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156206874_156207991_156208127_156208432_156208580_156209873
ENSMUSG00000059939.14_11	chr4	+	2837	9	NIC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	4	-4	intron_retention	FALSE	canonical	3	88	junction_1	48.8618908250592	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	8262	False	NA	16	True	NA	NA	NA	156194445	156211716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUSG00000059939.14_13	chr4	+	2412	9	NIC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	-2	-4	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	67.7595703572565	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	8269	False	NA	16	True	NA	NA	NA	156194452	156211716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUSG00000059939.14_16	chr4	+	2932	8	FSM	ENSMUSG00000059939.14	ENSMUST00000125786.8	2937	8	-1	6	-1	-4	multi-exon	FALSE	canonical	3	88	junction_1	44.3313129302804	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	8257	False	NA	16	True	NA	NA	NA	156194440	156211716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208580_156209873
ENSMUSG00000059939.14_2	chr4	+	2520	10	FSM	ENSMUSG00000059939.14	ENSMUST00000072554.13	2528	10	4	4	1	-2	multi-exon	FALSE	canonical	3	69	junction_5	55.1321644374276	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGTTGAGGTCATGA	8259	False	NA	18	True	NA	NA	NA	156194442	156211718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUSG00000059939.14_36	chr4	+	5641	8	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-2	-4	intron_retention	FALSE	canonical	3	85	junction_1	51.0613876243336	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	8301	False	NA	16	True	NA	NA	NA	156194484	156211716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUSG00000059939.14_37	chr4	+	2628	10	FSM	ENSMUSG00000059939.14	ENSMUST00000169550.8	2660	10	28	4	-4	-4	multi-exon	FALSE	canonical	3	69	junction_5	55.5417760689095	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	8299	False	NA	16	True	NA	NA	NA	156194482	156211716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUSG00000059939.14_41	chr4	+	2949	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-3	-4	intron_retention	FALSE	canonical	3	85	junction_1	49.4621067080649	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	8300	False	NA	16	True	NA	NA	NA	156194483	156211716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUSG00000059939.14_42	chr4	+	2719	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	69	junction_5	54.8475158963467	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGTTGAGGTCATGA	8300	False	NA	18	True	NA	NA	NA	156194483	156211718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208580_156209873
ENSMUSG00000059939.14_6	chr4	+	5530	8	NIC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	4	-4	intron_retention	FALSE	canonical	3	88	junction_1	50.3550658132945	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	8262	False	NA	16	True	NA	NA	NA	156194445	156211716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUSG00000059939.14_64	chr4	+	3653	4	ISM	ENSMUSG00000059939.14	ENSMUST00000125786.8	2937	8	10904	6	6993	-4	3prime_fragment	FALSE	canonical	3	183	junction_1	11.8415464455544	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	2044	False	NA	16	True	NA	NA	NA	156205345	156211716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_156206874_156207991_156208127_156208432_156208580_156209873
ENSMUSG00000059939.14_66	chr4	+	2671	5	ISM	ENSMUSG00000059939.14	ENSMUST00000105576.2	1329	9	11782	-1040	7885	-4	3prime_fragment	FALSE	canonical	3	97	junction_3	44.7800178651148	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	2936	False	NA	16	True	NA	NA	NA	156206237	156211716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUSG00000059939.14_7	chr4	+	2603	9	NIC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	69	junction_5	54.3310166939659	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGTTGAGGTCATGA	8266	False	NA	18	True	NA	NA	NA	156194449	156211718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208580_156209873
ENSMUSG00000059939.14_70	chr4	+	1176	1	ISM	ENSMUSG00000059939.14	ENSMUST00000072554.13	2528	10	16104	4	12190	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGTTGAGGTCATGA	7241	False	NA	18	True	NA	NA	NA	156210542	156211718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_156210500_156211700
ENSMUSG00000059970.8_0	chr12	+	2442	2	FSM	ENSMUSG00000059970.8	ENSMUST00000080449.7	2524	2	78	4	78	0	multi-exon	FALSE	canonical	1	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGCTGTCTGGCGTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	76451027	76453708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_76451064_76451302
ENSMUSG00000059970.8_1	chr12	+	2523	1	FSM	ENSMUSG00000059970.8	ENSMUST00000219555.2	2526	1	3	0	3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGCTGTCTGGCGTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	76451185	76453708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_76451200_76453700
ENSMUSG00000059975.16_10	chr7	-	2129	1	ISM	ENSMUSG00000059975.16	ENSMUST00000108205.9	3711	5	16670	304	8282	-304	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAATAGTCTATTTTCTT	NA	False	NA	-11	True	AATAAA	-11	NA	29634648	29632519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_29632500_29634600
ENSMUSG00000059975.16_3	chr7	-	3660	5	ISM	ENSMUSG00000059975.16	ENSMUST00000108212.8	2060	7	-18	1984	-18	-8	5prime_fragment	FALSE	canonical	2	4	junction_4	20.9568008054665	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACAGTAGTGGATATT	5360	False	NA	NA	False	AATAAA	-8	NA	29643198	29632223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915_29642966_29643056
ENSMUSG00000059975.16_5	chr7	-	3687	5	NIC	ENSMUSG00000059975.16	novel	3711	5	NA	NA	-40	-8	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	18.3626659284539	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACAGTAGTGGATATT	5338	False	NA	NA	False	AATAAA	-8	NA	29643220	29632223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915_29642971_29643056
ENSMUSG00000059975.16_8	chr7	-	3819	6	NNC	ENSMUSG00000059975.16	novel	3711	5	NA	NA	104	-18	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	15.0119952038362	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAGTTCAAAGAACAGT	NA	False	NA	NA	False	NA	NA	NA	29653408	29632233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915_29642971_29651138_29651316_29653279
ENSMUSG00000059975.16_9	chr7	-	3082	3	ISM	ENSMUSG00000059975.16	ENSMUST00000032797.9	2040	4	5523	-1143	5523	-308	3prime_fragment	FALSE	canonical	3	51	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATGGAATAGTCTATTT	NA	False	NA	-15	True	AATAAA	-7	NA	29637407	29632523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_29635469_29637024_29637121_29637366
ENSMUSG00000059981.13_21	chr7	-	4908	16	FSM	ENSMUSG00000059981.13	ENSMUST00000117394.2	4985	16	21	56	21	-56	multi-exon	FALSE	canonical	3	97	junction_14	9.03228776236797	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	8454	False	NA	NA	False	NA	NA	NA	126483854	126468730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126470814_126471077_126471282_126471368_126471735_126473469_126473629_126473820_126474106_126474228_126474397_126475024_126475107_126475197_126475292_126477894_126477987_126478091_126478206_126478362_126478460_126478578_126478625_126479223_126479326_126479419_126479492_126479668_126479836_126483077
ENSMUSG00000059981.13_24	chr7	-	1488	1	ISM	ENSMUSG00000059981.13	ENSMUST00000117394.2	4985	16	13657	56	595	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	4883	False	NA	NA	False	NA	NA	NA	126470218	126468730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_126468700_126470200
ENSMUSG00000059981.13_3	chr7	-	4696	19	FSM	ENSMUSG00000059981.13	ENSMUST00000071268.11	4720	19	22	2	22	-2	multi-exon	TRUE	canonical	3	55	junction_2	21.6270292703766	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCACAGGATGTCTCCCT	8455	False	NA	-7	True	AATAAA	-18	NA	126483853	126464851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126466088_126466168_126466352_126467281_126467495_126470573_126470814_126471077_126471282_126471368_126471735_126473469_126473629_126473820_126474106_126474228_126474397_126475024_126475107_126475197_126475292_126477894_126477987_126478091_126478206_126478362_126478460_126478578_126478625_126479223_126479326_126479419_126479492_126479668_126479836_126483077
ENSMUSG00000059991.8_0	chr5	+	2544	5	FSM	ENSMUSG00000059991.8	ENSMUST00000071782.8	2536	5	-15	7	-15	-7	multi-exon	FALSE	canonical	3	146	junction_1	16.768646337734	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACGCTTTGAGCTTCTTG	NA	False	NA	4	True	ATTAAA	-10	NA	144482696	144494281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_144483294_144484928_144485146_144490209_144490455_144492106_144492287_144492976
ENSMUSG00000059991.8_11	chr5	+	871	1	ISM	ENSMUSG00000059991.8	ENSMUST00000071782.8	2536	5	10701	5	10701	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGCTTTGAGCTTCTTGTT	NA	False	NA	6	True	ATTAAA	-12	NA	144493412	144494283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_144493400_144494300
ENSMUSG00000059995.13_1	chr11	-	3747	13	FSM	ENSMUSG00000059995.13	ENSMUST00000073234.9	3688	13	-60	1	-60	0	multi-exon	FALSE	canonical	3	100	junction_12	22.3811676788023	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGGCCTGCCCACTCTC	NA	False	NA	-7	True	AATAAA	-18	NA	102187517	102180126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102182630_102182723_102182882_102182961_102183034_102183267_102183312_102183530_102183600_102183892_102183922_102184101_102184148_102184471_102184495_102184669_102184768_102184959_102185132_102185335_102185469_102185774_102185886_102187228
ENSMUSG00000059995.13_10	chr11	-	3955	13	NIC	ENSMUSG00000059995.13	novel	3688	13	NA	NA	-211	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	44.3723982022859	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGGCCTGCCCACTCTC	NA	False	NA	-7	True	AATAAA	-18	NA	102187668	102180126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_102182630_102182723_102182882_102182961_102183034_102183267_102183312_102183530_102183600_102183892_102183979_102184101_102184148_102184471_102184495_102184669_102184768_102184959_102185132_102185335_102185469_102185774_102185886_102187228
ENSMUSG00000059995.13_3	chr11	-	3768	13	FSM	ENSMUSG00000059995.13	ENSMUST00000107132.3	3706	13	-63	1	-61	-1	multi-exon	FALSE	canonical	3	20	junction_7	41.9393576753653	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCGGCCTGCCCACTCT	NA	False	NA	-8	True	AATAAA	-17	NA	102187518	102180127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102182630_102182723_102182882_102182961_102183034_102183267_102183312_102183530_102183600_102183892_102183922_102184101_102184169_102184471_102184495_102184669_102184768_102184959_102185132_102185335_102185469_102185774_102185886_102187228
ENSMUSG00000059995.13_5	chr11	-	3459	12	FSM	ENSMUSG00000059995.13	ENSMUST00000107134.8	3712	12	252	1	-73	0	multi-exon	FALSE	canonical	3	127	junction_7	17.6967102513153	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGGCCTGCCCACTCTC	NA	False	NA	-7	True	AATAAA	-18	NA	102185886	102180126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_102182630_102182723_102182882_102182961_102183034_102183267_102183312_102183530_102183600_102183892_102183922_102184101_102184148_102184471_102184495_102184669_102184768_102184959_102185132_102185335_102185469_102185774
ENSMUSG00000059995.13_6	chr11	-	1722	1	ISM	ENSMUSG00000059995.13	ENSMUST00000145484.2	3102	7	2422	1	2422	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGGCCTGCCCACTCTC	3429	False	NA	-7	True	AATAAA	-18	NA	102181848	102180126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102180100_102181800
ENSMUSG00000059995.13_7	chr11	-	3182	10	ISM	ENSMUSG00000059995.13	ENSMUST00000107134.8	3712	12	1039	1	-110	0	3prime_fragment	FALSE	canonical	3	127	junction_7	18.2601231859326	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGGCCTGCCCACTCTC	178	False	NA	-7	True	AATAAA	-18	NA	102185099	102180126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102182630_102182723_102182882_102182961_102183034_102183267_102183312_102183530_102183600_102183892_102183922_102184101_102184148_102184471_102184495_102184669_102184768_102184959
ENSMUSG00000060002.15_0	chr10	-	1541	9	FSM	ENSMUSG00000060002.15	ENSMUST00000139109.8	1447	9	-73	-21	8	-1	multi-exon	FALSE	canonical	0	0	junction_1	64.1847918123912	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATTCATATTTCTGCAA	4132	False	NA	-8	True	AATAAA	-17	NA	88339824	88308679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_88308847_88311194_88311399_88312209_88312336_88312871_88313031_88316676_88316809_88318092_88318178_88324243_88324386_88325442_88325591_88339446
ENSMUSG00000060002.15_10	chr10	-	1986	3	ISM	ENSMUSG00000060002.15	ENSMUST00000117579.8	1043	4	-46	1473	6	-24	5prime_fragment	FALSE	canonical	3	203	junction_2	12.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATGAAAAATTAAAAA	4130	False	NA	NA	False	NA	NA	NA	88339826	88322927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_88324386_88325442_88325591_88339446
ENSMUSG00000060002.15_2	chr10	-	1450	9	FSM	ENSMUSG00000060002.15	ENSMUST00000117440.8	4863	9	109	3304	6	-1	multi-exon	FALSE	canonical	3	79	junction_1	46.4837001001426	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATTCATATTTCTGCAA	4130	False	NA	-8	True	AATAAA	-17	NA	88339826	88308679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_88308847_88311287_88311399_88312209_88312336_88312871_88313031_88316676_88316809_88318092_88318178_88324243_88324386_88325442_88325591_88339446
ENSMUSG00000060002.15_5	chr10	-	3219	8	FSM	ENSMUSG00000060002.15	ENSMUST00000020253.15	3898	8	6	673	6	-651	multi-exon	FALSE	canonical	3	100	junction_3	42.2794396889098	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATACAAAACCGATTCTGT	4130	False	NA	NA	False	AATAAA	-6	NA	88339826	88309351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_88311399_88312209_88312336_88312871_88313031_88316676_88316809_88318092_88318178_88324243_88324386_88325442_88325591_88339446
ENSMUSG00000060002.15_9	chr10	-	865	4	FSM	ENSMUSG00000060002.15	ENSMUST00000073783.6	852	4	-39	26	6	-26	multi-exon	FALSE	canonical	3	81	junction_1	64.2201076160903	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAATGAAAAATTAAA	4130	False	NA	NA	False	NA	NA	NA	88339826	88322929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_88323125_88324243_88324386_88325442_88325591_88339446
ENSMUSG00000060012.10_1	chr14	+	8858	39	NIC	ENSMUSG00000060012.10	novel	8865	40	NA	NA	3	-1	combination_of_known_junctions	TRUE	canonical	2	40	junction_3	13.4687490961881	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCCGAGGTCAAGCATA	NA	False	NA	9	True	AATAAA	-19	NA	64889993	65047065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_64890106_64907072_64907167_64945940_64945954_64951522_64951584_64952836_64952930_64954922_64955104_64959755_64959844_64962148_64962284_64964522_64964636_64965661_64965774_64973596_64973810_64974943_64975055_64975955_64976091_64979755_64979887_64982324_64982412_64983747_64983939_64984377_64984589_64985894_64986058_64987661_64987809_64988954_64989105_64989416_64989546_64994862_64995034_64995999_64996158_64998117_64998251_65002451_65002599_65003159_65003190_65004802_65004903_65005061_65005189_65005868_65005925_65007990_65008113_65010359_65010537_65013685_65013779_65016762_65016916_65017139_65017218_65019790_65019845_65025856_65025969_65027013_65027148_65040422_65041180_65043479
ENSMUSG00000060012.10_3	chr14	+	8921	40	FSM	ENSMUSG00000060012.10	ENSMUST00000224503.2	8865	40	-57	1	3	-1	multi-exon	FALSE	canonical	2	39	junction_37	14.1361837027482	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCCGAGGTCAAGCATA	NA	False	NA	9	True	AATAAA	-19	NA	64889993	65047065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_64890106_64907072_64907167_64945940_64945954_64951522_64951584_64952836_64952930_64954922_64955104_64959755_64959844_64962148_64962284_64964522_64964636_64965661_64965774_64973596_64973810_64974943_64975055_64975955_64976091_64979755_64979887_64982324_64982412_64983747_64983939_64984377_64984589_64985894_64986058_64987661_64987809_64988954_64989105_64989416_64989546_64994862_64995034_64995999_64996158_64998117_64998251_65002451_65002599_65003159_65003190_65004802_65004903_65005061_65005189_65005868_65005925_65007990_65008113_65010359_65010537_65013685_65013779_65016762_65016916_65017139_65017218_65019790_65019845_65025856_65025969_65027013_65027148_65037793_65037857_65040422_65041180_65043479
ENSMUSG00000060012.10_33	chr14	+	3941	2	ISM	ENSMUSG00000060012.10	ENSMUST00000224503.2	8865	40	150775	0	15374	0	3prime_fragment	FALSE	canonical	3	81	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCCGAGGTCAAGCATAA	NA	False	NA	10	True	AATAAA	-20	NA	65040825	65047066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_65041180_65043479
ENSMUSG00000060012.10_34	chr14	+	3027	1	ISM	ENSMUSG00000060012.10	ENSMUST00000224503.2	8865	40	153989	0	18588	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCCGAGGTCAAGCATAA	NA	False	NA	10	True	AATAAA	-20	NA	65044039	65047066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_65044000_65047100
ENSMUSG00000060012.10_36	chr14	+	2752	21	ISM	ENSMUSG00000060012.10	ENSMUST00000100473.5	5603	40	11	54121	0	27415	5prime_fragment	FALSE	canonical	2	40	junction_3	12.0357799913425	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACTTATAAATGCCCGT	NA	False	NA	NA	False	AATAAA	-10	NA	64889990	64989624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_64890106_64907072_64907167_64945940_64945954_64951522_64951584_64952836_64952930_64954922_64955104_64959755_64959844_64962148_64962284_64964522_64964636_64965661_64965774_64973596_64973810_64974943_64975055_64975955_64976091_64979755_64979887_64982324_64982412_64983747_64983939_64984377_64984589_64985894_64986058_64987661_64987809_64988954_64989105_64989416
ENSMUSG00000060012.10_63	chr14	+	8521	35	ISM	ENSMUSG00000060012.10	ENSMUST00000224503.2	8865	40	64898	2	64898	-2	3prime_fragment	FALSE	canonical	3	39	junction_32	13.4798324304474	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTCCGAGGTCAAGCAT	1806	False	NA	8	True	AATAAA	-18	NA	64954948	65047064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_64955104_64959755_64959844_64962148_64962284_64964522_64964636_64965661_64965774_64973596_64973810_64974943_64975055_64975955_64976091_64979755_64979887_64982324_64982412_64983747_64983939_64984377_64984589_64985894_64986058_64987661_64987809_64988954_64989105_64989416_64989546_64994862_64995034_64995999_64996158_64998117_64998251_65002451_65002599_65003159_65003190_65004802_65004903_65005061_65005189_65005868_65005925_65007990_65008113_65010359_65010537_65013685_65013779_65016762_65016916_65017139_65017218_65019790_65019845_65025856_65025969_65027013_65027148_65037793_65037857_65040422_65041180_65043479
ENSMUSG00000060019.7_0	chr8	-	125	1	FSM	ENSMUSG00000060019.7	ENSMUST00000073722.7	342	1	260	-43	260	43	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAAAAAC	NA	False	NA	NA	False	AATAAA	-14	NA	107299722	107299597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107299600_107299700
ENSMUSG00000060032.7_0	chr6	+	503	1	FSM	ENSMUSG00000060032.7	ENSMUST00000074556.7	1831	1	47	1281	-42	-1000	mono-exon	FALSE	NA	NA	NA	NA	NA	497	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAATCTAGAGAGCTGTGT	NA	False	NA	19	True	AATAAA	-15	NA	136785288	136785791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_136785300_136785800
ENSMUSG00000060036.15_15	chr15	-	1261	9	ISM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	823	8	0	-4	3prime_fragment	FALSE	canonical	3	23824	junction_4	2715.03229435213	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACACTGGTTTTCCCAC	4341	False	NA	-9	True	AATAAA	-9	NA	79966784	79961999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590
ENSMUSG00000060036.15_2	chr15	-	1291	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	54	6	1	-2	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	5485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACACTGGTTTTCCCACAT	3572	False	NA	-7	True	AATAAA	-11	NA	79967553	79961997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
ENSMUSG00000060036.15_4	chr15	-	1472	10	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	214	junction_7	9920.80080773053	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	-6	True	AATAAA	-12	NA	79967553	79961996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
ENSMUSG00000060038.15_0	chr8	+	1315	9	FSM	ENSMUSG00000060038.15	ENSMUST00000078665.13	1333	9	13	5	13	1	multi-exon	FALSE	canonical	3	191	junction_2	36.5391485259304	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCAGTCTGCATCCTTGGT	NA	False	NA	18	True	AATAAA	-24	NA	85798398	85801786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85798683_85799080_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
ENSMUSG00000060038.15_11	chr8	+	1251	8	ISM	ENSMUSG00000060038.15	ENSMUST00000078665.13	1333	9	479	1	-65	-1	3prime_fragment	FALSE	canonical	3	191	junction_1	37.2788718406859	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGCATCCTTGGTGTCA	NA	False	NA	22	True	AATAAA	-28	NA	85798864	85801790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
ENSMUSG00000060038.15_3	chr8	+	1994	8	NIC	ENSMUSG00000060038.15	novel	1333	9	NA	NA	10	-1	intron_retention	FALSE	canonical	3	210	junction_2	33.4621321154867	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCAGTCTGCATCCTTG	NA	False	NA	16	True	AATAAA	-22	NA	85798395	85801784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_85798683_85799080_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
ENSMUSG00000060063.10_2	chr5	+	910	4	NIC	ENSMUSG00000060063.10	novel	1251	5	NA	NA	167	6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	18.4571575998762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCTCAGATTGGGGTGA	NA	False	NA	-83	True	AATAAA	-23	NA	149201743	149224860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_149201993_149209190_149209291_149222153_149222236_149224381
ENSMUSG00000060063.10_3	chr5	+	1042	5	FSM	ENSMUSG00000060063.10	ENSMUST00000071130.5	1251	5	194	15	194	-15	multi-exon	FALSE	canonical	3	24	junction_2	7.22841614740048	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGACGCTAACGTCTTCAA	NA	False	NA	5	True	ATTAAA	-17	NA	149201770	149224948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_149201993_149209190_149209291_149215985_149216057_149222153_149222236_149224381
ENSMUSG00000060073.10_0	chr12	+	927	11	FSM	ENSMUSG00000060073.10	ENSMUST00000160027.8	2846	11	73	1846	5	0	multi-exon	FALSE	canonical	3	3391	junction_8	417.753084967664	1326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTGTTGGGTAATTGA	4793	False	NA	1	True	ATTAAA	-12	NA	71021467	71041275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_1	chr12	+	922	11	FSM	ENSMUSG00000060073.10	ENSMUST00000071704.4	875	11	-21	-26	5	0	multi-exon	FALSE	canonical	3	320	junction_2	1129.97747322679	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTGTTGGGTAATTGA	4793	False	NA	1	True	ATTAAA	-12	NA	71021467	71041275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_71021542_71025506_71025590_71030097_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060090.17_14	chrX	+	3832	4	ISM	ENSMUSG00000060090.17	ENSMUST00000115387.8	4498	6	12557	2	12497	-2	3prime_fragment	FALSE	canonical	3	378	junction_1	20.5318181259127	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTCTTGATGTCTATAC	3944	False	NA	1	True	AATAAA	-16	NA	20243354	20267090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_20243786_20247943_20248059_20263459_20263546_20263890
ENSMUSG00000060090.17_18	chrX	+	2350	1	ISM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	34011	12	33873	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTTGGATATTTCTTG	NA	False	NA	-9	True	AATAAA	-6	NA	20264730	20267080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_20264700_20267100
ENSMUSG00000060090.17_2	chrX	+	3712	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	93	612	-1	-612	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTGGTCTAATCTCT	NA	False	NA	NA	False	TTTAAA	-6	NA	20230812	20266480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
ENSMUSG00000060096.6_0	chr18	-	1880	1	FSM	ENSMUSG00000060096.6	ENSMUST00000072796.6	1005	1	-324	-551	-324	551	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAGTTGAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-12	NA	64583084	64581204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_64581200_64583100
ENSMUSG00000060098.12_0	chr8	+	2277	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	91	1104	4	-1104	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	1702	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGGCTTGTGGCTCAAT	1910	False	NA	22	True	AATAAA	-23	NA	106937658	106978322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
ENSMUSG00000060121.16_2	chr12	+	1054	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	52	482	-9	101	multi-exon	FALSE	canonical	1	279	junction_3	161.403565980158	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATTGGAACAGTTTTCT	NA	False	NA	49	True	AAAAAG	-19	NA	59060230	59074774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
ENSMUSG00000060121.16_4	chr12	+	2465	9	NIC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	-9	-234	intron_retention	FALSE	canonical	1	279	junction_3	170.872028138019	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCCGGGCTGGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	59060230	59074951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59068523_59071788_59071900_59073640_59073700_59074522
ENSMUSG00000060126.15_0	chr14	+	842	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	209	118	0	0	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	1465	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGAACTCTTTGCTGT	1047	False	NA	4	True	AATAAA	-15	NA	76082741	76085737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
ENSMUSG00000060143.8_0	chr14	+	379	1	FSM	ENSMUSG00000060143.8	ENSMUST00000227553.2	383	1	2	2	2	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-19	NA	105919264	105919643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_105919300_105919600
ENSMUSG00000060147.16_0	chr13	-	1320	7	FSM	ENSMUSG00000060147.16	ENSMUST00000043552.17	1547	7	217	10	-3	-1	multi-exon	FALSE	canonical	3	175	junction_6	98.4119742036845	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCAGAACTGTCTGTCT	8474	False	NA	-8	True	AATAAA	-18	NA	34119964	34101910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119904
ENSMUSG00000060147.16_1	chr13	-	1346	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	3	40	junction_6	142.613697331872	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCAGAACTGTCTGTCT	8603	False	NA	-8	True	AATAAA	-18	NA	34119835	34101910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119749
ENSMUSG00000060147.16_10	chr13	-	1543	8	NIC	ENSMUSG00000060147.16	novel	1654	8	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	174.090991924877	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCAGAACTGTCTGTCT	8477	False	NA	-8	True	AATAAA	-18	NA	34119961	34101910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119551_34119778_34119904
ENSMUSG00000060147.16_11	chr13	-	374	1	ISM	ENSMUSG00000060147.16	ENSMUST00000167163.8	1654	8	17780	12	3756	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTTCAGAACTGTCTGT	NA	False	NA	-10	True	AATAAA	-16	NA	34102286	34101912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_34101900_34102300
ENSMUSG00000060147.16_19	chr13	-	1469	8	FSM	ENSMUSG00000060147.16	ENSMUST00000076532.14	1504	8	25	10	1	-1	multi-exon	FALSE	canonical	3	10	junction_7	178.591998815222	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCAGAACTGTCTGTCT	NA	False	NA	-8	True	AATAAA	-18	NA	34186752	34101910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34180225_34180335_34186652
ENSMUSG00000060147.16_2	chr13	-	1526	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	14	-1	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	145.701464188479	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCAGAACTGTCTGTCT	8621	False	NA	-8	True	AATAAA	-18	NA	34119817	34101910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119551
ENSMUSG00000060147.16_5	chr13	-	1513	7	ISM	ENSMUSG00000060147.16	ENSMUST00000167163.8	1654	8	258	10	23	-1	3prime_fragment	FALSE	canonical	0	0	junction_6	156.4210841145	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCAGAACTGTCTGTCT	8630	False	NA	-8	True	AATAAA	-18	NA	34119808	34101910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119555
ENSMUSG00000060147.16_6	chr13	-	1488	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	152.257092518615	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCAGAACTGTCTGTCT	8609	False	NA	-8	True	AATAAA	-18	NA	34119829	34101910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119601
ENSMUSG00000060147.16_7	chr13	-	1457	7	ISM	ENSMUSG00000060147.16	ENSMUST00000017188.14	1504	8	173	1	25	-1	3prime_fragment	FALSE	canonical	3	43	junction_6	141.587134537947	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCAGAACTGTCTGTCT	8632	False	NA	-8	True	AATAAA	-18	NA	34119806	34101910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119609
ENSMUSG00000060149.8_0	chr17	+	2074	4	FSM	ENSMUSG00000060149.8	ENSMUST00000232328.2	1598	4	0	-476	0	-4	multi-exon	FALSE	canonical	3	27	junction_1	5.55777733351102	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATATTCCCAAGTGGCCT	NA	False	NA	20	True	NA	NA	NA	17171813	17194415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_17171971_17191161_17191289_17191432_17191494_17192686
ENSMUSG00000060149.8_1	chr17	+	1922	3	FSM	ENSMUSG00000060149.8	ENSMUST00000190415.2	1964	3	40	2	27	-2	multi-exon	FALSE	canonical	2	8	junction_1	11	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTCCCAAGTGGCCTAC	NA	False	NA	22	True	NA	NA	NA	17171840	17194417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_17171971_17191432_17191494_17192686
ENSMUSG00000060149.8_3	chr17	+	2825	4	NNC	ENSMUSG00000060149.8	novel	1598	4	NA	NA	78	67397	at_least_one_novel_splicesite	FALSE	canonical	3	137	junction_3	2.62466929133727	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGAGTATGCTGCTCT	NA	False	NA	29	True	NA	NA	NA	17171891	17261816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_17171971_17257537_17257665_17257906_17257968_17259258
ENSMUSG00000060149.8_5	chr17	+	3314	3	ISM	ENSMUSG00000060149.8	ENSMUST00000232328.2	1598	4	17949	-474	-3409	-6	3prime_fragment	FALSE	canonical	3	30	junction_2	5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATATTCCCAAGTGGC	NA	False	NA	18	True	NA	NA	NA	17189762	17194413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_17191289_17191432_17191494_17192686
ENSMUSG00000060152.15_2	chr5	+	733	5	ISM	ENSMUSG00000060152.15	ENSMUST00000081497.13	1025	6	2206	25	-5	0	3prime_fragment	FALSE	canonical	3	535	junction_1	139.257629952545	168	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATGTGCACTTGCCTT	NA	False	NA	11	True	AATAAA	-13	NA	115376100	115379025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_115376129_115376193_115376337_115378220_115378371_115378531_115378616_115378697
ENSMUSG00000060152.15_4	chr5	+	787	4	NIC	ENSMUSG00000060152.15	novel	1025	6	NA	NA	6	0	intron_retention	FALSE	canonical	3	770	junction_1	71.2242156073964	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATGTGCACTTGCCTT	NA	False	NA	11	True	AATAAA	-13	NA	115376111	115379025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_115376337_115378220_115378371_115378531_115378616_115378697
ENSMUSG00000060166.7_1	chr16	-	3375	11	FSM	ENSMUSG00000060166.7	ENSMUST00000076957.7	4868	11	1	1492	1	-727	multi-exon	FALSE	canonical	3	49	junction_5	10.6494131293701	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGGAAAAATCATTT	NA	False	NA	-17	True	NA	NA	NA	18052999	18040108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18041242_18042081_18043080_18044322_18044433_18044509_18044631_18044916_18045053_18045218_18045311_18045639_18045743_18045922_18046096_18046177_18046336_18046498_18046621_18052770
ENSMUSG00000060166.7_11	chr16	-	1984	1	NIC	ENSMUSG00000060166.7	novel	4868	11	NA	NA	454	-727	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGGAAAAATCATTT	NA	False	NA	-17	True	NA	NA	NA	18042092	18040108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_18040100_18042100
ENSMUSG00000060166.7_7	chr16	-	4214	10	NIC	ENSMUSG00000060166.7	novel	4868	11	NA	NA	2	-727	intron_retention	FALSE	canonical	3	49	junction_4	10.5771708509354	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGGAAAAATCATTT	NA	False	NA	-17	True	NA	NA	NA	18052998	18040108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_18043080_18044322_18044433_18044509_18044631_18044916_18045053_18045218_18045311_18045639_18045743_18045922_18046096_18046177_18046336_18046498_18046621_18052770
ENSMUSG00000060180.13_0	chr11	+	4004	25	ISM	ENSMUSG00000060180.13	ENSMUST00000081911.12	5817	39	17703	-82	17703	-2	3prime_fragment	FALSE	canonical	3	52	junction_14	14.9210887300119	150	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATCCATGCTCTGCTGTG	NA	False	NA	20	True	AATAAA	-16	NA	67235631	67262410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_67235705_67235806_67235895_67238714_67238833_67239625_67239750_67240395_67240533_67241059_67241316_67242779_67243023_67244398_67244576_67245472_67245619_67245727_67245819_67246628_67247019_67248933_67249061_67249146_67249266_67251106_67251304_67252074_67252259_67253230_67253397_67254012_67254138_67255287_67255597_67255677_67255882_67257978_67258105_67258382_67258554_67259930_67260036_67260134_67260231_67261745_67261881_67262313
ENSMUSG00000060180.13_1	chr11	+	3897	24	NIC	ENSMUSG00000060180.13	novel	5817	39	NA	NA	17705	-2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_21	20.5284624211406	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATCCATGCTCTGCTGTG	NA	False	NA	20	True	AATAAA	-16	NA	67235633	67262410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_67235705_67235806_67235895_67238714_67238833_67239625_67239750_67240395_67240533_67241059_67241316_67242779_67243023_67244398_67244576_67245472_67245619_67245727_67245819_67246628_67247019_67248933_67249061_67249146_67249266_67251106_67251304_67252074_67252259_67253230_67253397_67254012_67254138_67255287_67255597_67255677_67255882_67257978_67258105_67258382_67258554_67260134_67260231_67261745_67261881_67262313
ENSMUSG00000060181.7_1	chr10	-	3507	5	FSM	ENSMUSG00000060181.7	ENSMUST00000079041.7	3489	5	-22	4	-22	-4	multi-exon	FALSE	canonical	3	51	junction_4	6.41774882649672	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCATACAGGCTGATAAGC	NA	False	NA	NA	False	AATAAA	-15	NA	117582292	117569587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_117572139_117576416_117576500_117576657_117576817_117580789_117580901_117581689
ENSMUSG00000060181.7_5	chr10	-	2246	1	ISM	ENSMUSG00000060181.7	ENSMUST00000079041.7	3489	5	10437	4	9014	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCATACAGGCTGATAAGC	NA	False	NA	NA	False	AATAAA	-15	NA	117571833	117569587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_117569600_117571800
ENSMUSG00000060198.8_0	chr13	+	613	1	FSM	ENSMUSG00000060198.8	ENSMUST00000180940.2	627	1	-23	37	-23	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATCTGCGGAAGATCAAAG	NA	False	NA	NA	False	NA	NA	NA	26676513	26677126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_26676500_26677100
ENSMUSG00000060206.12_0	chr4	+	8224	13	NIC	ENSMUSG00000060206.12	novel	4823	11	NA	NA	-4	163	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	9.10585891976516	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAGGAACACAAATTG	-17	True	NA	NA	False	AAAAAG	-7	NA	54945043	55081521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_54945102_55007532_55007783_55008255_55013850_55014682_55014848_55016996_55017101_55020088_55020208_55023414_55023607_55050185_55050454_55051190_55051328_55060013_55060238_55072972_55073106_55079263_55079388_55080665
ENSMUSG00000060206.12_11	chr4	+	3670	6	ISM	ENSMUSG00000060206.12	ENSMUST00000079605.5	4684	11	38811	-2224	38811	-9	3prime_fragment	FALSE	canonical	3	22	junction_3	4.95580467734555	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATGTATTTATGTGCAT	5385	False	NA	1	True	AATAAA	-10	NA	55050290	55083554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_55050454_55051190_55051328_55060013_55060238_55072972_55073106_55079263_55079388_55080665
ENSMUSG00000060206.12_12	chr4	+	3311	4	ISM	ENSMUSG00000060206.12	ENSMUST00000079605.5	4684	11	48593	-2224	48593	-9	3prime_fragment	FALSE	canonical	3	22	junction_1	2.86744175568088	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATGTATTTATGTGCAT	NA	False	NA	1	True	AATAAA	-10	NA	55060072	55083554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_55060238_55072972_55073106_55079263_55079388_55080665
ENSMUSG00000060206.12_13	chr4	+	2945	2	ISM	ENSMUSG00000060206.12	ENSMUST00000079605.5	4684	11	67854	-2226	67854	-7	3prime_fragment	FALSE	canonical	3	29	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATTTATGTGCATCT	NA	False	NA	3	True	AATAAA	-12	NA	55079333	55083556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_55079388_55080665
ENSMUSG00000060206.12_14	chr4	+	2092	1	ISM	ENSMUSG00000060206.12	ENSMUST00000098070.10	10465	13	133487	9	69983	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATGTATTTATGTGCAT	NA	False	NA	1	True	AATAAA	-10	NA	55081462	55083554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_55081500_55083600
ENSMUSG00000060206.12_19	chr4	+	3122	3	ISM	ENSMUSG00000060206.12	ENSMUST00000079605.5	4684	11	61518	-2225	61518	-8	3prime_fragment	FALSE	canonical	3	26	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATGTATTTATGTGCATC	NA	False	NA	2	True	AATAAA	-11	NA	55072997	55083555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_55073106_55079263_55079388_55080665
ENSMUSG00000060206.12_5	chr4	+	5532	11	ISM	ENSMUSG00000060206.12	ENSMUST00000098070.10	10465	13	64496	210	992	-210	3prime_fragment	FALSE	canonical	2	11	junction_1	7.07177488329486	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCTATTGACTCCAATA	3178	False	NA	NA	False	AATAAA	-11	NA	55012471	55083353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_55013850_55014682_55014848_55016996_55017101_55020088_55020208_55023414_55023607_55050185_55050454_55051190_55051328_55060013_55060238_55072972_55073106_55079263_55079388_55080665
ENSMUSG00000060206.12_6	chr4	+	4936	10	NIC	ENSMUSG00000060206.12	novel	10465	13	NA	NA	1597	-9	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	10.5946643920535	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATGTATTTATGTGCAT	3783	False	NA	1	True	AATAAA	-10	NA	55013076	55083554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_55013850_55014682_55014848_55016996_55017101_55020088_55020208_55050185_55050454_55051190_55051328_55060013_55060238_55072972_55073106_55079263_55079388_55080665
ENSMUSG00000060206.12_7	chr4	+	4340	10	ISM	ENSMUSG00000060206.12	ENSMUST00000098070.10	10465	13	66729	2	3225	-2	3prime_fragment	FALSE	canonical	2	18	junction_2	5.80761526460977	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATGTGCATCTGTTAA	5411	False	NA	8	True	AATAAA	-17	NA	55014704	55083561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_55014848_55016996_55017101_55020088_55020208_55023414_55023607_55050185_55050454_55051190_55051328_55060013_55060238_55072972_55073106_55079263_55079388_55080665
ENSMUSG00000060212.14_10	chr8	-	3076	4	ISM	ENSMUSG00000060212.14	ENSMUST00000131127.3	3782	17	47133	-2282	-11334	2282	3prime_fragment	FALSE	canonical	2	5	junction_1	2.44948974278318	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGTTAAAAAAAAAAAAAAA	7777	False	NA	NA	False	NA	NA	NA	126577923	126562063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_126564773_126566322_126566433_126577021_126577114_126577758
ENSMUSG00000060212.14_3	chr8	-	4234	21	ISM	ENSMUSG00000060212.14	ENSMUST00000047239.13	7236	34	47142	5	-11325	-2	3prime_fragment	TRUE	canonical	2	2	junction_9	2.04633819296811	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTATGGCTGTCTGTCTAC	7786	False	NA	NA	False	ATTAAA	-9	NA	126577914	126478251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_126479052_126480110_126480560_126485850_126486042_126487446_126487722_126488262_126488494_126489543_126489689_126494955_126495078_126498715_126498950_126500540_126500795_126512010_126512227_126515232_126515292_126528199_126528330_126534738_126534848_126542399_126542578_126545407_126545550_126553657_126553809_126554781_126554875_126564675_126564773_126566322_126566433_126577021_126577114_126577758
ENSMUSG00000060216.16_0	chr11	+	1735	15	FSM	ENSMUSG00000060216.16	ENSMUST00000102564.11	1848	15	-11	124	-3	-4	multi-exon	FALSE	canonical	3	204	junction_13	22.0579015413562	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATGAATGTGTATGTGT	NA	False	NA	10	True	AATAAA	-10	NA	70323467	70331496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
ENSMUSG00000060216.16_13	chr11	+	1759	15	NIC	ENSMUSG00000060216.16	novel	1848	15	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	65.7627538650745	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATGAATGTGTATGTGT	NA	False	NA	10	True	AATAAA	-10	NA	70323469	70331496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70323580_70326341_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
ENSMUSG00000060216.16_15	chr11	+	1707	14	NIC	ENSMUSG00000060216.16	novel	1848	15	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	69.6723523816336	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATGAATGTGTATGTGT	NA	False	NA	10	True	AATAAA	-10	NA	70323464	70331496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70323580_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
ENSMUSG00000060216.16_2	chr11	+	1768	15	FSM	ENSMUSG00000060216.16	ENSMUST00000108568.10	1777	15	5	4	-3	-4	multi-exon	FALSE	canonical	3	37	junction_13	60.0347263452324	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATGAATGTGTATGTGT	NA	False	NA	10	True	AATAAA	-10	NA	70323467	70331496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330643_70330732_70330989
ENSMUSG00000060216.16_5	chr11	+	1403	16	FSM	ENSMUSG00000060216.16	ENSMUST00000102563.2	1352	16	-54	3	-1	-3	multi-exon	FALSE	canonical	3	12	junction_15	64.7561580083315	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTGAAACTTGGCTTG	NA	False	NA	34	True	AATAAA	-40	NA	70323469	70331646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989_70331102_70331581
ENSMUSG00000060227.16_0	chr2	+	2560	10	NNC	ENSMUSG00000060227.16	novel	4215	10	NA	NA	-22	4917	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	76.5927179596366	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTTTAAAAAATTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	121697428	121771618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121763958_121765019_121771444
ENSMUSG00000060227.16_1	chr2	+	2717	11	NNC	ENSMUSG00000060227.16	novel	4215	10	NA	NA	-11	4917	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	68.2422156732913	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTTTAAAAAATTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	121697439	121771618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121756041_121756210_121763958_121765019_121771444
ENSMUSG00000060227.16_2	chr2	+	3911	10	FSM	ENSMUSG00000060227.16	ENSMUST00000078752.10	4215	10	-9	313	-9	0	multi-exon	FALSE	canonical	3	136	junction_8	32.2490309931942	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCACAGTTTTGATTATAT	NA	False	NA	8	True	AATAAA	-17	NA	121697441	121766388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121756041_121756210_121763958
ENSMUSG00000060227.16_3	chr2	+	3745	9	FSM	ENSMUSG00000060227.16	ENSMUST00000110586.10	4032	9	-11	298	-11	0	multi-exon	FALSE	canonical	3	90	junction_8	46.1246612453685	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCACAGTTTTGATTATAT	NA	False	NA	8	True	AATAAA	-17	NA	121697439	121766388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121763958
ENSMUSG00000060227.16_39	chr2	+	2048	1	ISM	ENSMUSG00000060227.16	ENSMUST00000110586.10	4032	9	66888	300	35051	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCACAGTTTTGATTAT	NA	False	NA	6	True	AATAAA	-15	NA	121764338	121766386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_121764300_121766400
ENSMUSG00000060240.13_0	chr7	-	1648	2	FSM	ENSMUSG00000060240.13	ENSMUST00000137488.2	1697	2	51	-2	-16	2	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGCTGGGCTGCTGTCCT	8732	False	NA	NA	False	AATAAA	-13	NA	141009280	141006361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_141007917_141009187
ENSMUSG00000060244.2_0	chr1	+	1086	1	FSM	ENSMUSG00000060244.2	ENSMUST00000081527.2	1273	1	88	99	88	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATATGACTTTTATGGAC	8	False	NA	NA	False	NA	NA	NA	171331133	171332219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171331100_171332200
ENSMUSG00000060260.14_0	chr7	+	2264	3	FSM	ENSMUSG00000060260.14	ENSMUST00000093993.5	3057	3	-15	808	-15	6	multi-exon	FALSE	canonical	3	49	junction_2	5.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAGAAAGAAAAGAAAA	NA	False	NA	NA	False	AAAAAG	-1	NA	138828382	138847083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_138828560_138834685_138836077_138846387
ENSMUSG00000060260.14_1	chr7	+	2563	3	FSM	ENSMUSG00000060260.14	ENSMUST00000172136.9	2543	3	-20	0	-15	0	multi-exon	FALSE	canonical	3	21	junction_2	19.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAACAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	138828382	138847077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_138828560_138834685_138836382_138846387
ENSMUSG00000060260.14_5	chr7	+	1493	2	ISM	ENSMUSG00000060260.14	ENSMUST00000093993.5	3057	3	6876	814	6871	0	3prime_fragment	FALSE	canonical	3	49	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAACAGAAAGAAA	372	False	NA	NA	False	NA	NA	NA	138835273	138847077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_138836077_138846387
ENSMUSG00000060261.17_1	chr5	-	4336	34	FSM	ENSMUSG00000060261.17	ENSMUST00000111261.12	4381	34	39	6	13	0	multi-exon	FALSE	canonical	3	228	junction_23	69.7198249746108	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCAAACTCATTCTTTT	674	False	NA	-12	True	AATAAA	-22	NA	134343561	134266696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134301377_134301441_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ENSMUSG00000060261.17_12	chr5	-	4281	33	FSM	ENSMUSG00000060261.17	ENSMUST00000173341.9	4302	33	17	4	-10	0	multi-exon	FALSE	canonical	3	192	junction_8	74.2225788486058	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCAAACTCATTCTTTT	678	False	NA	-12	True	AATAAA	-22	NA	134343557	134266696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272454_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ENSMUSG00000060261.17_5	chr5	-	4222	32	NIC	ENSMUSG00000060261.17	novel	4302	33	NA	NA	-6	1	combination_of_known_junctions	TRUE	canonical	3	46	junction_23	92.9314137344788	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAACTCATTCTTTTCC	682	False	NA	-10	True	AATAAA	-24	NA	134343553	134266694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272454_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ENSMUSG00000060261.17_6	chr5	-	4274	33	NIC	ENSMUSG00000060261.17	novel	4021	33	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	196	junction_23	67.772417589588	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCAAACTCATTCTTTT	673	False	NA	-12	True	AATAAA	-22	NA	134343562	134266696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ENSMUSG00000060261.17_8	chr5	-	4208	32	NIC	ENSMUSG00000060261.17	novel	4021	33	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_23	87.7984282082411	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCAAACTCATTCTTTT	682	False	NA	-12	True	AATAAA	-22	NA	134343553	134266696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ENSMUSG00000060261.17_9	chr5	-	4348	34	NIC	ENSMUSG00000060261.17	novel	4381	34	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	192	junction_8	75.7046966966276	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCAAACTCATTCTTTT	674	False	NA	-12	True	AATAAA	-22	NA	134343561	134266696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272454_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134301377_134301441_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
ENSMUSG00000060275.15_0	chr18	-	3145	10	FSM	ENSMUSG00000060275.15	ENSMUST00000239409.2	2017	10	8	-1136	8	874	multi-exon	FALSE	canonical	2	4	junction_1	1.56347191994114	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCAGAAATAACTCCTG	NA	False	NA	NA	False	TATAAA	-2	NA	36201670	36149830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_36151736_36154110_36154339_36154905_36155034_36155358_36155483_36157358_36157462_36165388_36165466_36171283_36171405_36178910_36179030_36185832_36186005_36201502
ENSMUSG00000060275.15_1	chr18	-	2893	10	FSM	ENSMUSG00000060275.15	ENSMUST00000115713.9	3056	10	10	153	10	109	multi-exon	FALSE	canonical	0	0	junction_9	2.45452467048606	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGTATAACAAAATGT	NA	False	NA	NA	False	AATAAA	-25	NA	36330423	36150857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_36151736_36154110_36154339_36154905_36155034_36155358_36155483_36157358_36157462_36165388_36165466_36171283_36171405_36178910_36179030_36185832_36186005_36329480
ENSMUSG00000060279.15_0	chr7	-	3355	23	FSM	ENSMUSG00000060279.15	ENSMUST00000107857.11	3301	23	-54	0	10	0	multi-exon	FALSE	canonical	0	0	junction_5	144.442358888666	1449	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTACCCCAGCTATTGA	NA	False	NA	-14	True	AATAAA	-13	NA	44578904	44549808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551139_44552172_44552263_44552397_44552481_44552567_44552625_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
ENSMUSG00000060288.14_0	chr4	-	744	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106318.8	800	10	50	6	1	-6	multi-exon	TRUE	canonical	2	32	junction_8	163.771144144263	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCATGGGTTCTGTAGTT	9632	False	NA	-9	True	AATAAA	-13	NA	119177693	119157212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119157381_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUSG00000060288.14_1	chr4	-	763	10	FSM	ENSMUSG00000060288.14	ENSMUST00000056458.14	757	10	-12	6	1	-6	multi-exon	FALSE	canonical	2	32	junction_8	169.629516415942	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCATGGGTTCTGTAGTT	9632	False	NA	-9	True	AATAAA	-13	NA	119177693	119157212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119157400_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUSG00000060288.14_8	chr4	-	1285	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106321.9	1288	10	-11	14	2	-14	multi-exon	FALSE	canonical	2	32	junction_8	172.260640876149	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGTTCTCACTATACTA	9633	False	NA	-16	True	NA	NA	NA	119177692	119164370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119165081_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUSG00000060301.7_0	chr10	-	4201	6	FSM	ENSMUSG00000060301.7	ENSMUST00000039271.7	4229	6	26	2	5	-2	multi-exon	FALSE	canonical	1	4	junction_1	2.33238075793812	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGTCAGGATATTTTAT	NA	False	NA	-2	True	NA	NA	NA	78933408	78900209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_78903886_78904467_78904563_78924120_78924214_78928245_78928339_78930264_78930392_78933291
ENSMUSG00000060301.7_4	chr10	-	1748	1	ISM	ENSMUSG00000060301.7	ENSMUST00000039271.7	4229	6	31466	13	31391	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTAATTTGCTGTGTCA	NA	False	NA	-13	True	NA	NA	NA	78901968	78900220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_78900200_78902000
ENSMUSG00000060314.14_0	chr7	-	3874	3	FSM	ENSMUSG00000060314.14	ENSMUST00000106052.2	3851	3	-36	13	10	-13	multi-exon	FALSE	canonical	3	50	junction_1	4	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAGTAAAAATGTTCAC	NA	False	NA	NA	False	NA	NA	NA	140402081	140389614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140393228_140398500_140398628_140401947
ENSMUSG00000060314.14_3	chr7	-	2094	1	NIC	ENSMUSG00000060314.14	novel	2791	4	NA	NA	10342	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAAAAATGTTCACATTGG	NA	False	NA	NA	False	NA	NA	NA	140391703	140389609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_140389600_140391700
ENSMUSG00000060336.7_11	chr2	+	1216	1	ISM	ENSMUSG00000060336.7	ENSMUST00000073782.4	2797	4	21409	28	21409	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150081401	150082617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_150081400_150082600
ENSMUSG00000060336.7_2	chr2	+	2652	5	NNC	ENSMUSG00000060336.7	novel	2797	4	NA	NA	30	-31	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	10.5948100502085	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGAAAAGAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	150060022	150082614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_150060119_150078611_150078739_150078948_150079010_150080162_150080906_150080989
ENSMUSG00000060336.7_3	chr2	+	2737	4	FSM	ENSMUSG00000060336.7	ENSMUST00000073782.4	2797	4	29	31	29	-31	multi-exon	FALSE	canonical	3	15	junction_1	5.35412613473634	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGAAAAGAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	150060021	150082614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_150060119_150078611_150078739_150078948_150079010_150080162
ENSMUSG00000060373.16_1	chr14	-	1314	8	NIC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	1620	junction_2	930.149406475834	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAACTGTCTCCAAAATAA	8749	False	NA	41	True	AATAAA	-17	NA	52341461	52312256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_10	chr14	-	1334	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	-34	1	0	-1	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAACTGTCTCCAAAATAA	8750	False	NA	41	True	AATAAA	-17	NA	52341460	52312256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_12	chr14	-	1363	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	2	1252	0	2	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGTCTCCAAAATAATCT	8750	False	NA	44	True	AATAAA	-20	NA	52341460	52312253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060373.16_13	chr14	-	1337	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227458.2	1683	9	-1	347	0	-1	multi-exon	FALSE	canonical	3	633	junction_2	1099.6436638748	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAACTGTCTCCAAAATAA	8749	False	NA	41	True	AATAAA	-17	NA	52341461	52312256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060373.16_14	chr14	-	1341	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228748.2	1691	9	4	346	0	1	multi-exon	FALSE	canonical	3	1620	junction_2	876.028386740407	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTGTCTCCAAAATAATC	8750	False	NA	43	True	AATAAA	-19	NA	52341460	52312254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060373.16_19	chr14	-	1379	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228198.2	2498	9	-4	1123	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1148.92795139643	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8750	False	NA	42	True	AATAAA	-18	NA	52341460	52312255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060373.16_3	chr14	-	1404	9	FSM	ENSMUSG00000060373.16	ENSMUST00000111610.12	2847	9	23	1420	0	2	multi-exon	FALSE	canonical	3	714	junction_5	1135.23408929612	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGTCTCCAAAATAATCT	8748	False	NA	44	True	AATAAA	-20	NA	52341462	52312253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060373.16_7	chr14	-	1378	8	NIC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	714	junction_5	1223.61628639314	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTCTCCAAAATAATCTC	8749	False	NA	45	True	AATAAA	-21	NA	52341461	52312252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_8	chr14	-	1351	8	NIC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	714	junction_5	1238.64623270566	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAACTGTCTCCAAAATAA	8751	False	NA	41	True	AATAAA	-17	NA	52341459	52312256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_9	chr14	-	1311	8	NIC	ENSMUSG00000060373.16	novel	1683	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	633	junction_2	1178.64943464794	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8750	False	NA	42	True	AATAAA	-18	NA	52341460	52312255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ENSMUSG00000060376.8_0	chr7	-	1667	9	FSM	ENSMUSG00000060376.8	ENSMUST00000071329.8	1899	9	231	1	231	-1	multi-exon	FALSE	canonical	3	232	junction_4	24.6373699895098	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGCTTCCTTCGTCTCT	9913	False	NA	-10	True	AGTAAA	-18	NA	25358175	25329371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25329859_25330424_25330597_25330766_25330909_25331062_25331270_25332664_25332827_25337586_25337696_25340881_25340969_25341068_25341252_25358057
ENSMUSG00000060377.5_0	chr14	-	133	1	FSM	ENSMUSG00000060377.5	ENSMUST00000081987.5	449	1	297	19	297	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATTACCTGAAAAAAAT	NA	False	NA	-20	True	ATTAAA	-8	NA	99231457	99231324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_99231300_99231500
ENSMUSG00000060397.7_1	chr7	+	2228	4	FSM	ENSMUSG00000060397.7	ENSMUST00000144578.2	3834	4	13	1593	13	-12	multi-exon	FALSE	canonical	2	3	junction_3	3.55902608401044	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACATATGACCCTTGT	NA	False	NA	NA	False	AATAAA	-24	NA	12615116	12625756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_12615288_12618569_12618697_12618949_12619046_12623922
ENSMUSG00000060402.9_0	chr7	-	2078	4	FSM	ENSMUSG00000060402.9	ENSMUST00000078686.8	2372	4	0	294	0	-3	multi-exon	TRUE	canonical	1	5	junction_3	4.02768199119819	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGGTGTCTACTCCAGG	NA	False	NA	-2	True	AATAAA	-17	NA	34512111	34374186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_34375670_34376059_34376098_34447486_34447703_34511770
ENSMUSG00000060404.4_0	chr13	+	161	1	Genic_Genomic	ENSMUSG00000060404.4	novel	NA	NA	NA	NA	3256	15	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAAAAAAAAAGAT	7599	False	NA	NA	False	NA	NA	NA	21303119	21303280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_21303100_21303300
ENSMUSG00000060419.9_0	chr5	-	522	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	-26	-55	-26	55	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	129205607	129205085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_129205100_129205600
ENSMUSG00000060427.16_1	chr8	-	2434	5	FSM	ENSMUSG00000060427.16	ENSMUST00000121886.8	2259	5	6	-181	3	181	multi-exon	FALSE	canonical	3	55	junction_4	33.7083075813663	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCTATCCCATTCAATCC	NA	False	NA	-47	True	NA	NA	NA	70078193	70063326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70078085
ENSMUSG00000060427.16_3	chr8	-	2435	5	NNC	ENSMUSG00000060427.16	novel	2259	5	NA	NA	375	196	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	46.3215662515852	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTCTTTAGTGCCTCCC	NA	False	NA	-32	True	NA	NA	NA	70077821	70063311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70077727
ENSMUSG00000060427.16_5	chr8	-	2357	6	NNC	ENSMUSG00000060427.16	novel	2259	5	NA	NA	3	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	63.0567997919336	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTTAGTACTCATTTCT	NA	False	NA	0	True	AATAAA	-29	NA	70078193	70063501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072326_70076987_70077083_70078085
ENSMUSG00000060427.16_6	chr8	-	520	1	Genic_Genomic	ENSMUSG00000060427.16	novel	NA	NA	NA	NA	2874	187	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCATTCAATCCTCTTTA	NA	False	NA	-41	True	NA	NA	NA	70063840	70063320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_70063300_70063800
ENSMUSG00000060429.13_0	chr15	-	3806	5	NNC	ENSMUSG00000060429.13	novel	4919	7	NA	NA	221659	-8	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_4	6.21992765231236	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCCAATGCCTAGGCTTA	9301	False	NA	-6	True	AATAAA	-13	NA	55548047	55499791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_55502824_55506050_55506242_55511252_55511450_55539699_55539840_55547801
ENSMUSG00000060429.13_1	chr15	-	3561	4	ISM	ENSMUSG00000060429.13	ENSMUST00000039769.13	4919	7	230503	10	229864	-10	3prime_fragment	FALSE	canonical	3	32	junction_1	5.31245915016974	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTCCAATGCCTAGGCT	NA	False	NA	-8	True	AATAAA	-11	NA	55539842	55499793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_55502824_55506050_55506242_55511252_55511450_55539699
ENSMUSG00000060429.13_2	chr15	-	4734	7	FSM	ENSMUSG00000060429.13	ENSMUST00000039769.13	4919	7	177	8	-50	-8	multi-exon	FALSE	canonical	0	0	junction_6	17.2916164657906	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCCAATGCCTAGGCTTA	NA	False	NA	-6	True	AATAAA	-13	NA	55770168	55499791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_55502824_55506050_55506242_55511252_55511450_55539699_55539840_55612583_55612792_55655429_55655647_55769419
ENSMUSG00000060429.13_3	chr15	-	1701	1	ISM	ENSMUSG00000060429.13	ENSMUST00000039769.13	4919	7	268851	10	268212	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTCCAATGCCTAGGCT	NA	False	NA	-8	True	AATAAA	-11	NA	55501494	55499793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_55499800_55501500
ENSMUSG00000060438.6_0	chr3	+	547	1	FSM	ENSMUSG00000060438.6	ENSMUST00000074353.6	495	1	-17	-35	-17	35	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGAAAAAAAAAAAAAAAG	89	False	NA	12	True	AATAAA	-5	NA	95529571	95530118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95529600_95530100
ENSMUSG00000060450.15_0	chr18	+	2983	9	FSM	ENSMUSG00000060450.15	ENSMUST00000072376.13	3040	9	49	8	0	-1	multi-exon	FALSE	canonical	3	120	junction_3	53.7248487666555	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTGAAGTAGACACGGTG	975	False	NA	15	True	AATAAA	-20	NA	38429736	38450894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ENSMUSG00000060450.15_20	chr18	+	3148	11	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	89.3559734992575	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	974	False	NA	16	True	AATAAA	-21	NA	38429735	38450895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ENSMUSG00000060450.15_6	chr18	+	2828	8	FSM	ENSMUSG00000060450.15	ENSMUST00000236649.2	2822	8	-7	1	2	-1	multi-exon	FALSE	canonical	3	128	junction_3	44.1310663864829	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTGAAGTAGACACGGTG	978	False	NA	15	True	AATAAA	-20	NA	38429739	38450894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ENSMUSG00000060450.15_7	chr18	+	2990	10	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	92.9832057051696	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	980	False	NA	16	True	AATAAA	-21	NA	38429741	38450895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ENSMUSG00000060450.15_9	chr18	+	2502	6	NIC	ENSMUSG00000060450.15	novel	2822	8	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	90.4486594704421	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	970	False	NA	16	True	AATAAA	-21	NA	38429731	38450895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_38429852_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ENSMUSG00000060461.6_0	chr9	-	586	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	21	12	21	-12	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	34925	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGATTAAAATGTGCGTC	NA	False	NA	NA	False	AATAAA	-12	NA	78275438	78274345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_78274577_78275002_78275186_78275266
ENSMUSG00000060467.5_0	chr9	-	607	1	FSM	ENSMUSG00000060467.5	ENSMUST00000075585.5	438	1	-25	-144	-25	144	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCCTCAAAAAAGAAAAAAAA	2065	False	NA	NA	False	AATAAA	-15	NA	44286503	44285896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44285900_44286500
ENSMUSG00000060475.14_0	chr17	-	3583	8	NNC	ENSMUSG00000060475.14	novel	2051	8	NA	NA	-17	-4	intron_retention	FALSE	canonical	3	65	junction_2	221.334265632001	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGACTCTTGTTTGTTTTTT	NA	False	NA	-9	True	AATAAA	-11	NA	13211096	13185689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_13186939_13188291_13188447_13192596_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
ENSMUSG00000060475.14_1	chr17	-	1997	8	FSM	ENSMUSG00000060475.14	ENSMUST00000007007.14	2051	8	50	4	-17	-4	multi-exon	FALSE	canonical	3	178	junction_3	195.055094257798	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGACTCTTGTTTGTTTTTT	NA	False	NA	-9	True	AATAAA	-11	NA	13211096	13185689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
ENSMUSG00000060475.14_2	chr17	-	2099	8	FSM	ENSMUSG00000060475.14	ENSMUST00000159551.8	2060	8	-46	7	3	-4	multi-exon	FALSE	canonical	3	121	junction_7	218.990354833733	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGACTCTTGTTTGTTTTTT	NA	False	NA	-9	True	AATAAA	-11	NA	13211430	13185689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195
ENSMUSG00000060475.14_24	chr17	-	1740	6	FSM	ENSMUSG00000060475.14	ENSMUST00000160781.8	2442	6	-17	719	-17	-719	multi-exon	FALSE	canonical	3	121	junction_5	236.32384560175	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGTTGGGTTTTTTTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	13211450	13193157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195
ENSMUSG00000060475.14_25	chr17	-	1620	6	FSM	ENSMUSG00000060475.14	ENSMUST00000159986.8	3187	6	-19	1586	-19	-719	multi-exon	FALSE	canonical	3	178	junction_1	176.193756983612	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGTTGGGTTTTTTTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	13211098	13193157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
ENSMUSG00000060475.14_7	chr17	-	934	1	ISM	ENSMUSG00000060475.14	ENSMUST00000159551.8	2060	8	24764	4	15740	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTGTTTGTTTTTTCCT	NA	False	NA	-6	True	AATAAA	-14	NA	13186620	13185686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_13185700_13186600
ENSMUSG00000060477.15_0	chr6	+	3147	13	FSM	ENSMUSG00000060477.15	ENSMUST00000059286.14	3196	13	28	21	-6	-4	multi-exon	FALSE	canonical	2	5	junction_1	6.70820393249937	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTAGCAGCTGTCTTATA	NA	False	NA	5	True	AATAAA	-10	NA	113615455	113671966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113615603_113624599_113624783_113642663_113642808_113647159_113647255_113649699_113649901_113649983_113650049_113652591_113652707_113653547_113653658_113655607_113655804_113659693_113659757_113663718_113663920_113667743_113668033_113670628
ENSMUSG00000060477.15_4	chr6	+	2392	7	ISM	ENSMUSG00000060477.15	ENSMUST00000113024.3	1887	10	5778	-1212	5778	1	3prime_fragment	FALSE	canonical	3	13	junction_2	4.74926894959167	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCTGTCTTATAATTTT	1914	False	NA	10	True	AATAAA	-15	NA	113652516	113671971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113652707_113653547_113653658_113655607_113655804_113659693_113659757_113663718_113663920_113667743_113668033_113670628
ENSMUSG00000060477.15_5	chr6	+	1824	3	ISM	ENSMUSG00000060477.15	ENSMUST00000113024.3	1887	10	16984	-1207	-3983	-4	3prime_fragment	FALSE	canonical	3	24	junction_1	1	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTAGCAGCTGTCTTATA	3009	False	NA	5	True	AATAAA	-10	NA	113663722	113671966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113663920_113667743_113668033_113670628
ENSMUSG00000060477.15_7	chr6	+	837	1	ISM	ENSMUSG00000060477.15	ENSMUST00000059286.14	3196	13	55707	16	1415	1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCTGTCTTATAATTTT	954	False	NA	10	True	AATAAA	-15	NA	113671134	113671971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113671100_113672000
ENSMUSG00000060499.8_0	chr12	-	1020	1	FSM	ENSMUSG00000060499.8	ENSMUST00000081908.8	1023	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	257	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTAGCTTTGGTTGTTT	NA	False	NA	-6	True	ATTAAA	-18	NA	66331174	66330154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_66330200_66331200
ENSMUSG00000060508.17_0	chr7	+	3559	11	NIC	ENSMUSG00000060508.17	novel	3346	10	NA	NA	-20	-4	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	7.39256383131049	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGAATGTTTCCTCA	NA	False	NA	-3	True	AATAAA	-16	NA	19725369	19796861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_19725614_19741948_19742019_19753060_19753368_19757035_19758615_19760440_19760606_19762379_19762545_19776275_19776444_19779686_19779858_19782606_19782778_19783348_19783520_19796513
ENSMUSG00000060508.17_2	chr7	+	3585	11	NIC	ENSMUSG00000060508.17	novel	3346	10	NA	NA	-20	-4	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	8.2516664983505	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGAATGTTTCCTCA	NA	False	NA	-3	True	AATAAA	-16	NA	19725369	19796861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_19725614_19741948_19742019_19753034_19753368_19757035_19758615_19760440_19760606_19762379_19762545_19776275_19776444_19779686_19779858_19782606_19782778_19783348_19783520_19796513
ENSMUSG00000060508.17_5	chr7	+	3394	10	NIC	ENSMUSG00000060508.17	novel	3346	10	NA	NA	-20	-4	combination_of_known_splicesites	FALSE	canonical	3	9	junction_4	7.83786315046595	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGAATGTTTCCTCA	NA	False	NA	-3	True	AATAAA	-16	NA	19725369	19796861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_19725614_19741948_19742019_19753060_19753368_19757035_19758615_19762379_19762545_19776275_19776444_19779686_19779858_19782606_19782778_19783348_19783520_19796513
ENSMUSG00000060508.17_6	chr7	+	3420	10	NIC	ENSMUSG00000060508.17	novel	3346	10	NA	NA	-20	-4	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	8.7658146325849	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGAATGTTTCCTCA	NA	False	NA	-3	True	AATAAA	-16	NA	19725369	19796861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_19725614_19741948_19742019_19753034_19753368_19757035_19758615_19762379_19762545_19776275_19776444_19779686_19779858_19782606_19782778_19783348_19783520_19796513
ENSMUSG00000060510.15_0	chr9	-	3491	1	ISM	ENSMUSG00000060510.15	ENSMUST00000174462.8	6283	9	22851	8	22700	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGTGTGTTAATGT	NA	False	NA	NA	False	ATTAAA	-10	NA	20409862	20406371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20406400_20409900
ENSMUSG00000060510.15_3	chr9	-	6264	9	FSM	ENSMUSG00000060510.15	ENSMUST00000174462.8	6283	9	11	8	2	-8	multi-exon	FALSE	canonical	3	20	junction_8	12.7156399760295	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGTGTGTTAATGT	NA	False	NA	NA	False	ATTAAA	-10	NA	20432702	20406371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432639
ENSMUSG00000060510.15_4	chr9	-	6252	9	FSM	ENSMUSG00000060510.15	ENSMUST00000068296.8	2266	9	3	-3989	3	-8	multi-exon	FALSE	canonical	3	22	junction_8	12.1140414395857	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGTGTGTTAATGT	NA	False	NA	NA	False	ATTAAA	-10	NA	20432701	20406371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432650
ENSMUSG00000060510.15_7	chr9	-	6163	8	NIC	ENSMUSG00000060510.15	novel	6283	9	NA	NA	3	-8	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	18.5659332528968	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGTGTGTTAATGT	NA	False	NA	NA	False	ATTAAA	-10	NA	20432701	20406371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432639
ENSMUSG00000060512.8_0	chr5	+	1884	4	FSM	ENSMUSG00000060512.8	ENSMUST00000081747.8	2008	4	117	7	-40	-7	multi-exon	FALSE	canonical	2	5	junction_1	0.942809041582063	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCATCACGGTATATGT	1902	False	NA	NA	False	ATTAAA	-15	NA	63969822	64056961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_63969939_64033792_64033843_64053772_64053827_64055297
ENSMUSG00000060519.12_0	chr1	-	3257	6	FSM	ENSMUSG00000060519.12	ENSMUST00000079625.11	3285	6	26	2	-5	-2	multi-exon	FALSE	canonical	3	42	junction_5	7.96492310069595	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGATGGTTCTTCCT	NA	False	NA	NA	False	AATAAA	-15	NA	156501900	156481188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496940_156497207_156501099_156501217_156501655
ENSMUSG00000060519.12_1	chr1	-	2941	4	ISM	ENSMUSG00000060519.12	ENSMUST00000156861.8	3545	6	4643	2	-2952	-2	3prime_fragment	FALSE	canonical	3	47	junction_2	7.36357401145817	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGATGGTTCTTCCT	NA	False	NA	NA	False	AATAAA	-15	NA	156497252	156481188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496940
ENSMUSG00000060519.12_2	chr1	-	2626	3	ISM	ENSMUSG00000060519.12	ENSMUST00000156861.8	3545	6	7546	7	-49	-7	3prime_fragment	FALSE	canonical	3	47	junction_2	9	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCAAGTGCTGATGGTTC	NA	False	NA	NA	False	AATAAA	-10	NA	156494349	156481193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_156483514_156484041_156484167_156494168
ENSMUSG00000060519.12_6	chr1	-	3299	7	FSM	ENSMUSG00000060519.12	ENSMUST00000150557.8	3355	7	54	2	12	-2	multi-exon	FALSE	canonical	0	0	junction_3	24.5995709086335	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGATGGTTCTTCCT	NA	False	NA	NA	False	AATAAA	-15	NA	156501872	156481188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496683_156496754_156496940_156497207_156501099_156501217_156501655
ENSMUSG00000060538.15_1	chr7	-	918	6	FSM	ENSMUSG00000060538.15	ENSMUST00000121532.8	915	6	-4	1	-4	-1	multi-exon	FALSE	canonical	3	22	junction_5	16.451139778143	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTGTGTAAGGTACTTA	6238	False	NA	-3	True	AATAAA	-13	NA	126497429	126485392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496397_126497395
ENSMUSG00000060538.15_2	chr7	-	885	5	FSM	ENSMUSG00000060538.15	ENSMUST00000120007.8	1087	5	199	3	199	-1	multi-exon	FALSE	canonical	3	60	junction_1	3.20156211871642	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTGTGTAAGGTACTTA	7270	False	NA	-3	True	AATAAA	-13	NA	126496397	126485392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197
ENSMUSG00000060538.15_4	chr7	-	906	6	FSM	ENSMUSG00000060538.15	ENSMUST00000032926.12	941	6	34	1	11	-1	multi-exon	FALSE	canonical	3	26	junction_5	14.8781719307178	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTGTGTAAGGTACTTA	6253	False	NA	-3	True	AATAAA	-13	NA	126497414	126485392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496400_126497395
ENSMUSG00000060548.14_1	chr14	-	4267	10	FSM	ENSMUSG00000060548.14	ENSMUST00000111234.10	4051	10	-30	-186	-9	25	multi-exon	FALSE	canonical	3	46	junction_9	13.3813948598441	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTATGTGTCAAGTCAAAA	NA	False	NA	-1	True	AATAAA	-20	NA	61283948	61201298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61283563
ENSMUSG00000060548.14_3	chr14	-	4011	10	FSM	ENSMUSG00000060548.14	ENSMUST00000111236.4	3958	10	-28	-25	-28	25	multi-exon	FALSE	canonical	3	37	junction_9	15.475986974649	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTATGTGTCAAGTCAAAA	NA	False	NA	-1	True	AATAAA	-20	NA	61275427	61201298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
ENSMUSG00000060548.14_5	chr14	-	3517	6	NNC	ENSMUSG00000060548.14	novel	1087	6	NA	NA	-6302	25	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	25.9615099714943	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTATGTGTCAAGTCAAAA	NA	False	NA	-1	True	AATAAA	-20	NA	61219636	61201298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61219532
ENSMUSG00000060548.14_6	chr14	-	1925	1	Genic_Genomic	ENSMUSG00000060548.14	novel	NA	NA	NA	NA	10111	25	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTATGTGTCAAGTCAAAA	NA	False	NA	-1	True	AATAAA	-20	NA	61203223	61201298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_-_61201300_61203200
ENSMUSG00000060548.14_9	chr14	-	3581	7	ISM	ENSMUSG00000060548.14	ENSMUST00000111236.4	3958	10	32794	-25	-29271	25	3prime_fragment	FALSE	canonical	3	58	junction_5	10.1775897605147	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTATGTGTCAAGTCAAAA	NA	False	NA	-1	True	AATAAA	-20	NA	61242605	61201298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523
ENSMUSG00000060568.15_0	chr1	+	3361	2	FSM	ENSMUSG00000060568.15	ENSMUST00000126198.3	2951	2	-414	4	-365	-4	multi-exon	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAAGGTTTCAGTCTTTA	NA	False	NA	NA	False	ATTAAA	-7	NA	166828620	166908689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_166829398_166906105
ENSMUSG00000060579.14_1	chr14	+	848	7	FSM	ENSMUSG00000060579.14	ENSMUST00000161302.8	860	7	4	8	4	0	multi-exon	FALSE	canonical	1	3	junction_4	3.53160335006952	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATTTATCTGGTGTTC	NA	False	NA	NA	False	AATAAA	-10	NA	12016318	12919673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_12016405_12048159_12048279_12599597_12599744_12607726_12607757_12705964_12706034_12896261_12896361_12919374
ENSMUSG00000060586.12_0	chr17	+	1220	7	NNC	ENSMUSG00000060586.12	novel	1669	6	NA	NA	-5532	-11	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	69.5477453904071	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGAAAGTCATCTGCTTC	NA	False	NA	1	True	AATAAA	-5	NA	34519308	34535162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_34519432_34524926_34525022_34528564_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
ENSMUSG00000060586.12_10	chr17	+	1746	5	NIC	ENSMUSG00000060586.12	novel	1171	6	NA	NA	-26	-6	intron_retention	FALSE	canonical	3	177	junction_2	8.63133825081603	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCATCTGCTTCATAGA	NA	False	NA	6	True	AATAAA	-10	NA	34524873	34535167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_34525022_34528564_34528835_34533143_34534128_34534529_34534554_34534847
ENSMUSG00000060586.12_3	chr17	+	1162	6	FSM	ENSMUSG00000060586.12	ENSMUST00000235530.2	1669	6	26	481	26	-6	multi-exon	FALSE	canonical	3	177	junction_2	11.7064085013295	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCATCTGCTTCATAGA	NA	False	NA	6	True	AATAAA	-10	NA	34524866	34535167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34525022_34528564_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
ENSMUSG00000060586.12_5	chr17	+	1070	6	FSM	ENSMUSG00000060586.12	ENSMUST00000236232.2	1082	6	-2	14	-2	-14	multi-exon	FALSE	canonical	2	14	junction_1	73.665731517443	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATGAAAGTCATCTGC	NA	False	NA	-2	True	AATAAA	-2	NA	34524897	34535159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34525022_34528617_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
ENSMUSG00000060586.12_6	chr17	+	1118	5	FSM	ENSMUSG00000060586.12	ENSMUST00000235501.2	782	5	-95	-241	-95	-6	multi-exon	FALSE	canonical	3	177	junction_1	12.5896783120142	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCATCTGCTTCATAGA	NA	False	NA	6	True	AATAAA	-10	NA	34528453	34535167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
ENSMUSG00000060591.10_0	chr7	-	627	2	FSM	ENSMUSG00000060591.10	ENSMUST00000081649.10	655	2	21	7	21	-7	multi-exon	FALSE	canonical	3	9574	junction_1	0	2455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGGCTGTGACTCACT	NA	False	NA	-19	True	AATAAA	-15	NA	140535879	140534756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140535087_140535582
ENSMUSG00000060594.7_0	chr9	-	2879	8	FSM	ENSMUSG00000060594.7	ENSMUST00000098782.4	1786	8	36	-1129	8	-1011	multi-exon	FALSE	canonical	0	0	junction_1	0.832993127835043	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATCTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50988358	50966950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_50968957_50970756_50970857_50973482_50973567_50974536_50974573_50979338_50979497_50985147_50985446_50987621_50987646_50988185
ENSMUSG00000060600.16_1	chr11	+	3341	11	FSM	ENSMUSG00000060600.16	ENSMUST00000170716.8	1461	11	-1878	-2	-1284	-1	multi-exon	FALSE	canonical	2	42	junction_3	10.4861813831347	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGCTGTGTTCCTTAGG	5829	False	NA	12	True	AATAAA	-15	NA	70546743	70553338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ENSMUSG00000060600.16_2	chr11	+	2232	12	NNC	ENSMUSG00000060600.16	novel	1461	11	NA	NA	-1273	-5	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	17.6985781751385	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGACCATGCTGTGTT	5840	False	NA	5	True	AATAAA	-8	NA	70546754	70553331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_70547607_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ENSMUSG00000060600.16_4	chr11	+	1531	12	NNC	ENSMUSG00000060600.16	novel	1461	11	NA	NA	-1278	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	16.078320705043	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCATGCTGTGTTCCTTA	5835	False	NA	10	True	AATAAA	-13	NA	70546749	70553336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_70546896_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ENSMUSG00000060600.16_7	chr11	+	1456	12	NIC	ENSMUSG00000060600.16	novel	1454	12	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	18.9020966085339	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGACCATGCTGTGTT	7115	False	NA	5	True	AATAAA	-8	NA	70548029	70553331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70548106_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ENSMUSG00000060600.16_8	chr11	+	1448	12	FSM	ENSMUSG00000060600.16	ENSMUST00000072841.12	1454	12	3	3	1	0	multi-exon	FALSE	canonical	2	23	junction_1	14.3486688414174	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCATGCTGTGTTCCTTA	7116	False	NA	10	True	AATAAA	-13	NA	70548030	70553336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70548094_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ENSMUSG00000060600.16_9	chr11	+	1555	12	FSM	ENSMUSG00000060600.16	ENSMUST00000108548.8	1564	12	1	8	1	-5	multi-exon	FALSE	canonical	1	2	junction_1	19.1466718079752	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGACCATGCTGTGTT	7116	False	NA	5	True	AATAAA	-8	NA	70548030	70553331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_70548094_70548585_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ENSMUSG00000060601.14_12	chr7	-	1950	10	FSM	ENSMUSG00000060601.14	ENSMUST00000107911.8	1988	10	3	35	3	0	multi-exon	FALSE	canonical	0	0	junction_9	219.110209599227	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAACAAAAATAAA	NA	False	NA	-36	True	NA	NA	NA	44203369	44199075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002_44203133_44203232
ENSMUSG00000060601.14_2	chr7	-	1959	10	FSM	ENSMUSG00000060601.14	ENSMUST00000073488.12	1999	10	4	36	3	0	multi-exon	FALSE	canonical	0	0	junction_9	207.457626195488	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAACAAAAATAAA	NA	False	NA	-36	True	NA	NA	NA	44203369	44199075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202179_44203002_44203133_44203232
ENSMUSG00000060601.14_3	chr7	-	2223	9	NIC	ENSMUSG00000060601.14	novel	1944	10	NA	NA	3	0	intron_retention	FALSE	canonical	0	0	junction_8	224.141696254847	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAACAAAAATAAA	NA	False	NA	-36	True	NA	NA	NA	44203369	44199075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44202045_44202120_44202182_44203002_44203133_44203232
ENSMUSG00000060601.14_4	chr7	-	1962	10	NIC	ENSMUSG00000060601.14	novel	1944	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	224.012290227209	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAACAAAAATAAA	NA	False	NA	-36	True	NA	NA	NA	44203369	44199075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202182_44203002_44203133_44203232
ENSMUSG00000060601.14_5	chr7	-	1957	10	FSM	ENSMUSG00000060601.14	ENSMUST00000107910.8	1948	10	-22	13	3	4	multi-exon	FALSE	canonical	0	0	junction_9	233.829683717988	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAAAATAAAGTTT	NA	False	NA	-32	True	NA	NA	NA	44203369	44199071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202182_44203002_44203133_44203232
ENSMUSG00000060601.14_7	chr7	-	2230	9	FSM	ENSMUSG00000060601.14	ENSMUST00000123358.9	1853	9	-34	-343	3	-7	multi-exon	TRUE	canonical	0	0	junction_8	201.405336014218	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAATAAAGTTTGAGTAC	NA	False	NA	-26	True	AATAAA	-5	NA	44203369	44199065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44202045_44202120_44202179_44203002_44203133_44203232
ENSMUSG00000060636.15_0	chr16	+	455	5	FSM	ENSMUSG00000060636.15	ENSMUST00000078804.12	491	5	10	26	-3	-2	multi-exon	FALSE	canonical	3	3858	junction_1	2402.68870226669	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTTTTTCACATCTGT	NA	False	NA	8	True	AATAAA	-23	NA	32876832	32880533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32876881_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUSG00000060636.15_1	chr16	+	455	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115079.8	510	5	41	14	8	-3	multi-exon	FALSE	canonical	3	3184	junction_1	2675.04705566089	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTTTTTTCACATCTG	NA	False	NA	7	True	AATAAA	-22	NA	32876876	32880532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32876926_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUSG00000060636.15_7	chr16	+	512	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115078.8	500	5	-16	4	12	-4	multi-exon	FALSE	canonical	3	927	junction_1	3609.33805392346	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTTTTTTCACATCT	NA	False	NA	6	True	AATAAA	-21	NA	32876880	32880531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_32876988_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUSG00000060639.6_0	chr13	-	400	1	FSM	ENSMUSG00000060639.6	ENSMUST00000102977.4	727	1	0	327	0	-327	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAATCAAAAGAGCTAAG	NA	False	NA	NA	False	NA	NA	NA	22225532	22225132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_22225100_22225500
ENSMUSG00000060657.9_1	chr16	-	1608	1	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	48486	1	31759	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTAATGAGTGCTTTTG	NA	False	NA	-7	True	AATAAA	-15	NA	13928645	13927037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_13927000_13928600
ENSMUSG00000060657.9_11	chr16	-	7728	27	FSM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	15	8	15	-8	multi-exon	TRUE	canonical	2	10	junction_23	10.0957692234429	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATCATCTGTAATGAGT	9831	False	NA	-14	True	AATAAA	-8	NA	13977116	13927044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087_13938319_13943805_13944034_13944919_13945123_13946374_13946509_13946614_13946758_13947509_13947731_13949310_13949487_13950223_13950344_13950433_13950671_13954801_13954883_13956206_13956386_13958046_13958237_13959506_13959666_13959751_13959910_13960095_13960522_13963780_13963954_13964587_13964706_13966879_13967107_13969005_13969181_13969889_13970577_13971695_13971896_13977007
ENSMUSG00000060657.9_15	chr16	-	3089	5	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	41843	1	25116	-1	3prime_fragment	FALSE	canonical	3	39	junction_1	3.49106001094224	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTAATGAGTGCTTTTG	NA	False	NA	-7	True	AATAAA	-15	NA	13935288	13927037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853_13933915_13935146
ENSMUSG00000060657.9_21	chr16	-	4781	14	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	26529	5	9802	-5	3prime_fragment	FALSE	canonical	3	21	junction_8	9.70755820948463	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATCTGTAATGAGTGCT	NA	False	NA	-11	True	AATAAA	-11	NA	13950602	13927041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087_13938319_13943805_13944034_13944919_13945123_13946374_13946509_13946614_13946758_13947509_13947731_13949310_13949487_13950223_13950344_13950433
ENSMUSG00000060657.9_3	chr16	-	4085	10	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	30388	1	13661	-1	3prime_fragment	FALSE	canonical	3	21	junction_8	9.43332678968495	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTAATGAGTGCTTTTG	NA	False	NA	-7	True	AATAAA	-15	NA	13946743	13927037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087_13938319_13943805_13944034_13944919_13945123_13946374_13946509_13946614
ENSMUSG00000060657.9_30	chr16	-	2759	10	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	19	32139	19	-345	5prime_fragment	FALSE	canonical	3	10	junction_6	4.47213595499958	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACAAACAACATCTTACAC	9835	False	NA	NA	False	NA	NA	NA	13977112	13959175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_13959666_13959751_13959910_13960095_13960522_13963780_13963954_13964587_13964706_13966879_13967107_13969005_13969181_13969889_13970577_13971695_13971896_13977007
ENSMUSG00000060657.9_37	chr16	-	3303	7	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	14	35131	14	-3337	5prime_fragment	FALSE	canonical	3	10	junction_3	5.22812904711937	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGAGTCTTGTTTTTAC	9830	False	NA	NA	False	NA	NA	NA	13977117	13962167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_13963954_13964587_13964706_13966879_13967107_13969005_13969181_13969889_13970577_13971695_13971896_13977007
ENSMUSG00000060657.9_4	chr16	-	2650	2	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	45029	5	28302	-5	3prime_fragment	FALSE	canonical	3	39	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATCTGTAATGAGTGCT	NA	False	NA	-11	True	AATAAA	-11	NA	13932102	13927041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_13929636_13932046
ENSMUSG00000060657.9_6	chr16	-	2915	4	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	43249	1	26522	-1	3prime_fragment	FALSE	canonical	3	39	junction_1	4.02768199119819	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTAATGAGTGCTTTTG	NA	False	NA	-7	True	AATAAA	-15	NA	13933882	13927037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853
ENSMUSG00000060657.9_7	chr16	-	3290	6	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	38914	1	22187	-1	3prime_fragment	FALSE	canonical	3	39	junction_1	3.87814388593306	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTAATGAGTGCTTTTG	NA	False	NA	-7	True	AATAAA	-15	NA	13938217	13927037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087
ENSMUSG00000060657.9_8	chr16	-	3598	7	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	33119	1	16392	-1	3prime_fragment	FALSE	canonical	3	34	junction_6	5.03322295684717	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTAATGAGTGCTTTTG	NA	False	NA	-7	True	AATAAA	-15	NA	13944012	13927037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087_13938319_13943805
ENSMUSG00000060671.13_1	chr3	-	5429	28	FSM	ENSMUSG00000060671.13	ENSMUST00000168276.8	4265	28	196	-1360	-33	0	multi-exon	FALSE	canonical	3	87	junction_27	29.2541017489138	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTGAGTAATTTGTCTC	1129	False	NA	-7	True	TATAAA	-35	NA	89870619	89846795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89848739_89848981_89849113_89850636_89850776_89850920_89851167_89851415_89851500_89852303_89852528_89852788_89852973_89853227_89853373_89853485_89853592_89853734_89853847_89853931_89854097_89855110_89855227_89855353_89855543_89855693_89855860_89856275_89856320_89857115_89857325_89859981_89860179_89861508_89861598_89861746_89861906_89864317_89864398_89864604_89864676_89865115_89865189_89865284_89865347_89865595_89865695_89865815_89865930_89866297_89866357_89868381_89868449_89870463
ENSMUSG00000060671.13_16	chr3	-	4820	21	ISM	ENSMUSG00000060671.13	ENSMUST00000069805.14	5559	27	3238	10	2163	-2	3prime_fragment	FALSE	canonical	3	134	junction_19	22.7078730840209	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGGTGAGTAATTTGTC	7050	False	NA	-9	True	TATAAA	-33	NA	89864698	89846797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89848739_89848981_89849113_89850636_89850776_89850920_89851167_89851415_89851500_89852303_89852528_89852788_89852973_89853227_89853373_89853485_89853592_89853734_89853847_89853931_89854097_89855110_89855227_89855353_89855543_89855693_89855860_89856275_89856320_89857115_89857325_89859981_89860179_89861508_89861598_89861746_89861906_89864317_89864398_89864604
ENSMUSG00000060671.13_46	chr3	-	3404	11	ISM	ENSMUSG00000060671.13	ENSMUST00000163354.8	4894	17	6651	0	-159	0	3prime_fragment	FALSE	canonical	3	161	junction_8	16.389325794553	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTGAGTAATTTGTCTC	NA	False	NA	-7	True	TATAAA	-35	NA	89854021	89846795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89848739_89848981_89849113_89850636_89850776_89850920_89851167_89851415_89851500_89852303_89852528_89852788_89852973_89853227_89853373_89853485_89853592_89853734_89853847_89853931
ENSMUSG00000060671.13_8	chr3	-	1669	1	ISM	ENSMUSG00000060671.13	ENSMUST00000069805.14	5559	27	19472	8	2600	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTGAGTAATTTGTCTC	NA	False	NA	-7	True	TATAAA	-35	NA	89848464	89846795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_89846800_89848500
ENSMUSG00000060671.13_9	chr3	-	5501	27	FSM	ENSMUSG00000060671.13	ENSMUST00000069805.14	5559	27	50	8	50	0	multi-exon	TRUE	canonical	3	88	junction_26	26.7970677544519	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTGAGTAATTTGTCTC	3862	False	NA	-7	True	TATAAA	-35	NA	89867886	89846795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89848739_89848981_89849113_89850636_89850776_89850920_89851167_89851415_89851500_89852303_89852528_89852788_89852973_89853227_89853373_89853485_89853592_89853734_89853847_89853931_89854097_89855110_89855227_89855353_89855543_89855693_89855860_89856275_89856320_89857115_89857325_89859981_89860179_89861508_89861598_89861746_89861906_89864317_89864398_89864604_89864676_89865115_89865189_89865284_89865347_89865595_89865695_89865815_89865930_89866297_89866357_89867591
ENSMUSG00000060675.14_0	chr19	+	763	5	FSM	ENSMUSG00000060675.14	ENSMUST00000025925.11	3523	5	2	2758	2	-924	multi-exon	TRUE	canonical	3	141	junction_1	31.8825971338597	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTTGTGAGGATACTGC	NA	False	NA	11	True	AATAAA	-13	NA	7534825	7563152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_7534930_7535296_7535361_7552301_7552405_7556318_7556588_7562929
ENSMUSG00000060675.14_1	chr19	+	978	5	FSM	ENSMUSG00000060675.14	ENSMUST00000136756.2	1901	5	4	919	4	-919	multi-exon	FALSE	canonical	3	44	junction_1	71.8135606971274	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAGGATACTGCAGTAG	NA	False	NA	16	True	AATAAA	-18	NA	7534853	7563157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_7535168_7535296_7535361_7552301_7552405_7556318_7556588_7562929
ENSMUSG00000060675.14_2	chr19	+	811	4	ISM	ENSMUSG00000060675.14	ENSMUST00000025925.11	3523	5	313	2766	287	-932	3prime_fragment	FALSE	canonical	3	191	junction_2	16.9771087709958	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGGAATTTTTGTGAG	NA	False	NA	3	True	AATAAA	-5	NA	7535136	7563144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_7535361_7552301_7552405_7556318_7556588_7562929
ENSMUSG00000060679.15_0	chr1	+	1378	11	FSM	ENSMUSG00000060679.15	ENSMUST00000057208.13	1418	11	40	0	-3	0	multi-exon	FALSE	canonical	3	624	junction_3	42.3685024517034	552	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCCCTTTTTTTTTAAA	NA	False	NA	14	True	AATAAA	-16	NA	42890432	42944842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
ENSMUSG00000060681.16_11	chrX	+	4506	16	FSM	ENSMUSG00000060681.16	ENSMUST00000077741.12	4976	16	69	401	27	0	multi-exon	FALSE	canonical	0	0	junction_7	32.6612240363945	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATTCACTGTTAT	NA	False	NA	13	True	ATTAAA	-17	NA	55655203	55709189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_55655548_55665685_55665886_55667970_55668049_55668347_55668425_55668719_55668833_55673753_55673860_55678809_55678952_55680145_55680252_55680537_55680627_55683634_55683749_55688727_55688840_55691159_55691314_55696987_55697019_55700333_55700414_55703618_55703725_55706535
ENSMUSG00000060681.16_3	chrX	+	4417	17	NIC	ENSMUSG00000060681.16	novel	4976	16	NA	NA	16	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_8	37.5097903886439	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATTCACTGTTAT	NA	False	NA	13	True	ATTAAA	-17	NA	55655150	55709189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_55655181_55655322_55655548_55665685_55665886_55667970_55668049_55668347_55668425_55668719_55668833_55673753_55673860_55678809_55678952_55680145_55680252_55680537_55680627_55683634_55683749_55688727_55688840_55691159_55691314_55696987_55697019_55700333_55700414_55703618_55703725_55706535
ENSMUSG00000060681.16_32	chrX	+	2223	1	ISM	ENSMUSG00000060681.16	ENSMUST00000077741.12	4976	16	51836	397	3366	4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATTCACTGTTATTTGA	NA	False	NA	17	True	ATTAAA	-21	NA	55706970	55709193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_55707000_55709200
ENSMUSG00000060685.5_4	chrX	-	849	1	FSM	ENSMUSG00000060685.5	ENSMUST00000075792.5	850	1	-16	17	-16	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTGAAGTATAAAATTG	NA	False	NA	NA	False	AATAAA	-22	NA	8842814	8841965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8842000_8842800
ENSMUSG00000060703.13_0	chr2	-	1008	6	FSM	ENSMUSG00000060703.13	ENSMUST00000074606.11	1354	6	345	1	275	-1	multi-exon	FALSE	canonical	3	68	junction_2	6.41872261435249	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTCACTGCCTGGTCTTCT	4277	False	NA	-5	True	AATAAA	-14	NA	60114487	60082337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_60082836_60085414_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60114403
ENSMUSG00000060703.13_2	chr2	-	3581	5	NIC	ENSMUSG00000060703.13	novel	1354	6	NA	NA	274	-8	intron_retention	FALSE	canonical	3	68	junction_1	7.08872343937891	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACGCCGCTCACTGCCTG	4276	False	NA	-12	True	AATAAA	-7	NA	60114488	60082344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60114403
ENSMUSG00000060703.13_5	chr2	-	540	3	ISM	ENSMUSG00000060703.13	ENSMUST00000074606.11	1354	6	27434	8	27364	-8	3prime_fragment	FALSE	canonical	3	68	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACGCCGCTCACTGCCTG	NA	False	NA	-12	True	AATAAA	-7	NA	60087398	60082344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_60082836_60085414_60085442_60087376
ENSMUSG00000060708.5_0	chr5	-	1271	1	FSM	ENSMUSG00000060708.5	ENSMUST00000071949.5	1273	1	-7	9	-7	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGGCAGAGATTTCCT	NA	False	NA	-13	True	ATTAAA	-10	NA	36906001	36904730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_36904700_36906000
ENSMUSG00000060715.10_1	chr1	-	800	9	FSM	ENSMUSG00000060715.10	ENSMUST00000072235.10	646	9	30	-184	2	184	multi-exon	FALSE	canonical	3	34	junction_2	9.08209089362136	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGGTGCCCTTGGTTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	53226765	53197551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
ENSMUSG00000060715.10_2	chr1	-	535	8	NIC	ENSMUSG00000060715.10	novel	646	9	NA	NA	2	-5	combination_of_known_splicesites	FALSE	canonical	3	26	junction_7	12.1504178142657	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACTAGAACAGAATGGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	53226765	53197740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53226712
ENSMUSG00000060716.8_2	chr12	+	6393	29	FSM	ENSMUSG00000060716.8	ENSMUST00000039928.7	6439	29	33	13	33	-6	multi-exon	TRUE	canonical	3	125	junction_6	14.4205688557161	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAGACAATAACTGTGTG	6158	False	NA	-1	True	AATAAA	-11	NA	79075969	79128416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_79076195_79087265_79087437_79095965_79096029_79097039_79097190_79100369_79100454_79101262_79101345_79101433_79102189_79108745_79108828_79109308_79109401_79110892_79111044_79111221_79111350_79112434_79112546_79113394_79113482_79113847_79114010_79114735_79114817_79115145_79115329_79115792_79115902_79116677_79116791_79117561_79117739_79118070_79118169_79119509_79119688_79120172_79120329_79121363_79121465_79122174_79122317_79123227_79123371_79123479_79123610_79125421_79125509_79125733_79125881_79126211
ENSMUSG00000060716.8_22	chr12	+	5160	23	ISM	ENSMUSG00000060716.8	ENSMUST00000219956.2	5229	29	19482	-1013	-12491	-6	3prime_fragment	FALSE	canonical	3	127	junction_5	14.3906535324463	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAGACAATAACTGTGTG	NA	False	NA	-1	True	AATAAA	-11	NA	79101891	79128416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_79102189_79108745_79108828_79109308_79109401_79110892_79111044_79111221_79111350_79112434_79112546_79113394_79113482_79113847_79114010_79114735_79114817_79115145_79115329_79115792_79115902_79116677_79116791_79117561_79117739_79118070_79118169_79119509_79119688_79120172_79120329_79121363_79121465_79122174_79122317_79123227_79123371_79123479_79123610_79125421_79125509_79125733_79125881_79126211
ENSMUSG00000060716.8_35	chr12	+	1690	1	ISM	ENSMUSG00000060716.8	ENSMUST00000039928.7	6439	29	50794	9	12348	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAATAACTGTGTGTTGT	NA	False	NA	3	True	AATAAA	-15	NA	79126730	79128420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_79126700_79128400
ENSMUSG00000060726.11_1	chrX	-	483	5	FSM	ENSMUSG00000060726.11	ENSMUST00000113154.8	544	5	53	8	53	-8	multi-exon	FALSE	canonical	3	7	junction_4	4.9180788932265	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTGGTTTTGGGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	134625957	134619423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_134619503_134620414_134620520_134621315_134621402_134624106_134624186_134625823
ENSMUSG00000060733.14_2	chr10	+	3668	6	FSM	ENSMUSG00000060733.14	ENSMUST00000079252.13	5447	6	47	1732	-26	-1732	multi-exon	FALSE	canonical	3	262	junction_3	36.3130830417909	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGGATGGAAGTTGCAT	2263	False	NA	7	True	AATAAA	-21	NA	71183639	71219983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_71183921_71199279_71199366_71201838_71201936_71208537_71208711_71212534_71212617_71217034
ENSMUSG00000060733.14_28	chr10	+	3785	1	ISM	ENSMUSG00000060733.14	ENSMUST00000079252.13	5447	6	34331	7	345	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGAACGTCTTCCGTTGA	NA	False	NA	-3	True	ATTAAA	-10	NA	71217923	71221708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_71217900_71221700
ENSMUSG00000060733.14_3	chr10	+	3676	6	FSM	ENSMUSG00000060733.14	ENSMUST00000121446.2	1492	6	-31	-2153	-31	-1732	multi-exon	FALSE	canonical	3	80	junction_3	108.435049684131	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGGATGGAAGTTGCAT	2258	False	NA	7	True	AATAAA	-21	NA	71183634	71219983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_71183921_71199279_71199366_71201838_71201936_71208534_71208711_71212534_71212617_71217034
ENSMUSG00000060739.9_0	chr13	-	1042	6	FSM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	86	1572	1	-12	multi-exon	FALSE	canonical	3	555	junction_1	171.768914533451	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGGTCTTTAGTTTGGGG	NA	False	NA	NA	False	AATAAA	-16	NA	97274359	97267503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
ENSMUSG00000060739.9_4	chr13	-	892	5	ISM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	2280	1574	2195	-14	3prime_fragment	FALSE	canonical	3	555	junction_1	192.005859285596	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTGGTCTTTAGTTTGG	NA	False	NA	NA	False	AATAAA	-14	NA	97272165	97267505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028
ENSMUSG00000060739.9_7	chr13	-	715	4	ISM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	2539	1568	2454	-8	3prime_fragment	FALSE	canonical	3	555	junction_1	143.506097431433	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTTTAGTTTGGGGCATA	NA	False	NA	NA	False	AATAAA	-20	NA	97271906	97267499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801
ENSMUSG00000060743.13_0	chr1	-	403	1	ISM	ENSMUSG00000060743.13	ENSMUST00000161308.8	2841	4	10654	1744	10556	121	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAACTATACCTGCTTCT	NA	False	NA	NA	False	ATTAAA	-5	NA	180630543	180630140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_180630100_180630500
ENSMUSG00000060743.13_1	chr1	-	1025	4	FSM	ENSMUSG00000060743.13	ENSMUST00000161308.8	2841	4	75	1741	-10	124	multi-exon	TRUE	canonical	3	2337	junction_3	156.5907617539	942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTATACCTGCTTCTGGT	NA	False	NA	NA	False	ATTAAA	-8	NA	180641122	180630137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_180630771_180637681_180637836_180639363_180639515_180641035
ENSMUSG00000060771.16_12	chr1	-	3839	7	ISM	ENSMUSG00000060771.16	ENSMUST00000123082.9	3953	8	9463	3	1	-3	3prime_fragment	FALSE	canonical	2	9	junction_4	7.0178344238091	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTACAGTATAATTTT	NA	False	NA	NA	False	TATAAA	-45	NA	37894454	37871486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_37874417_37874502_37874674_37879579_37879739_37880265_37880434_37881535_37881602_37888311_37888528_37894325
ENSMUSG00000060771.16_17	chr1	-	2657	9	ISM	ENSMUSG00000060771.16	ENSMUST00000041815.15	3400	20	24	77925	18	-298	5prime_fragment	FALSE	canonical	1	1	junction_1	8.88028011945569	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAGTCTTTGTGTGGAC	NA	False	NA	-5	True	NA	NA	NA	37904136	37871781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_37873419_37874338_37874417_37874502_37874674_37879579_37879739_37880265_37880434_37881535_37881602_37888311_37888528_37894325_37894455_37904103
ENSMUSG00000060771.16_2	chr1	-	3594	8	FSM	ENSMUSG00000060771.16	ENSMUST00000155852.7	2861	8	1	-734	1	-298	multi-exon	FALSE	canonical	2	9	junction_4	6.49960752347276	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAGTCTTTGTGTGGAC	NA	False	NA	-5	True	NA	NA	NA	37904153	37871781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_37874417_37874502_37874674_37879579_37879739_37880265_37880434_37881535_37881602_37888311_37888528_37894325_37894455_37904103
ENSMUSG00000060771.16_20	chr1	-	2229	15	ISM	ENSMUSG00000060771.16	ENSMUST00000041815.15	3400	20	16	46688	10	-1	5prime_fragment	FALSE	canonical	0	0	junction_5	10.8178329717223	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCTATAAGAACATTAGC	NA	False	NA	NA	False	AATAAA	-20	NA	37904144	37840544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_37840987_37843709_37843821_37846017_37846187_37850052_37850109_37854612_37854768_37858605_37858722_37873266_37873419_37874338_37874417_37874502_37874674_37879579_37879739_37880265_37880434_37881535_37881602_37888311_37888528_37894325_37894455_37904103
ENSMUSG00000060771.16_6	chr1	-	2616	9	NIC	ENSMUSG00000060771.16	novel	3400	20	NA	NA	15	-298	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	9.31061222476804	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAGTCTTTGTGTGGAC	NA	False	NA	-5	True	NA	NA	NA	37904139	37871781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_37873419_37874338_37874417_37874502_37874674_37879579_37879739_37880265_37880390_37881535_37881602_37888311_37888528_37894325_37894455_37904103
ENSMUSG00000060771.16_7	chr1	-	3551	8	FSM	ENSMUSG00000060771.16	ENSMUST00000193669.2	1981	8	0	-1570	0	-298	multi-exon	FALSE	canonical	2	6	junction_4	7.29830844253989	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAGTCTTTGTGTGGAC	NA	False	NA	-5	True	NA	NA	NA	37904154	37871781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_37874417_37874502_37874674_37879579_37879739_37880265_37880390_37881535_37881602_37888311_37888528_37894325_37894455_37904103
ENSMUSG00000060771.16_8	chr1	-	2795	1	NIC	ENSMUSG00000060771.16	novel	3400	20	NA	NA	8521	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTACAGTATAATTTT	NA	False	NA	NA	False	TATAAA	-45	NA	37874281	37871486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_37871500_37874300
ENSMUSG00000060771.16_9	chr1	-	3657	8	FSM	ENSMUSG00000060771.16	ENSMUST00000123082.9	3953	8	-2	298	-2	-298	multi-exon	FALSE	canonical	2	7	junction_7	8.03309481114831	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAGTCTTTGTGTGGAC	NA	False	NA	-5	True	NA	NA	NA	37903919	37871781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_37874417_37874502_37874674_37879579_37879739_37880265_37880434_37881535_37881602_37888311_37888528_37894325_37894455_37903806
ENSMUSG00000060791.16_1	chr7	+	634	7	FSM	ENSMUSG00000060791.16	ENSMUST00000108292.9	657	7	18	5	18	2	multi-exon	FALSE	canonical	3	339	junction_1	45.6070170039655	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACGACATGGTATCTGC	1833	False	NA	NA	False	AATAAA	-21	NA	28136889	28145966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28137000_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
ENSMUSG00000060791.16_7	chr7	+	596	7	FSM	ENSMUSG00000060791.16	ENSMUST00000078845.13	637	7	43	-2	43	2	multi-exon	FALSE	canonical	3	32	junction_1	149.1011029097	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACGACATGGTATCTGC	189	False	NA	NA	False	AATAAA	-21	NA	28140394	28145966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28140467_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
ENSMUSG00000060798.8_0	chr3	+	6374	16	FSM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	12	1	12	-1	multi-exon	FALSE	canonical	3	12	junction_15	25.5603860169078	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTGCAGTATTATGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	40594927	40659203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_40595159_40608135_40608684_40618689_40618776_40627000_40627205_40629655_40629775_40633312_40633403_40633961_40634040_40637786_40637977_40642205_40642260_40645125_40645189_40646144_40646367_40646928_40647400_40648590_40648689_40651913_40652104_40654068_40654227_40655631
ENSMUSG00000060798.8_1	chr3	+	5977	17	NNC	ENSMUSG00000060798.8	novel	6387	16	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	25.5364323075875	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGCAGTATTATGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	40594929	40659204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_40595159_40608135_40608684_40618689_40618776_40627000_40627205_40629655_40629775_40633312_40633403_40633961_40634040_40637786_40637977_40642205_40642260_40645125_40645189_40646144_40646367_40646928_40647400_40648590_40648689_40651913_40652104_40654068_40654227_40655631_40657076_40657471
ENSMUSG00000060798.8_23	chr3	+	2341	1	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	61947	1	29812	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTGCAGTATTATGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	40656862	40659203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_40656900_40659200
ENSMUSG00000060798.8_3	chr3	+	1140	2	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	14	50158	14	0	5prime_fragment	FALSE	canonical	3	119	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTGCACTTGAGAACAC	NA	False	NA	1	True	AATAAA	-17	NA	40594929	40609046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_40595159_40608135
ENSMUSG00000060798.8_4	chr3	+	1083	3	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	10	40213	10	9945	5prime_fragment	FALSE	canonical	3	18	junction_2	50.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCAGCAGCAGTGA	NA	False	NA	NA	False	AATAAA	-14	NA	40594925	40618991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_40595159_40608135_40608684_40618689
ENSMUSG00000060798.8_7	chr3	+	6295	15	NIC	ENSMUSG00000060798.8	novel	6387	16	NA	NA	5	-1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	27.1455825699362	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTGCAGTATTATGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	40594920	40659203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_40595159_40608135_40608684_40627000_40627205_40629655_40629775_40633312_40633403_40633961_40634040_40637786_40637977_40642205_40642260_40645125_40645189_40646144_40646367_40646928_40647400_40648590_40648689_40651913_40652104_40654068_40654227_40655631
ENSMUSG00000060802.9_0	chr2	+	666	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	0	194	0	-194	multi-exon	FALSE	canonical	3	168	junction_2	12.4721912892465	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCTCTGTACTTCTCAT	NA	False	NA	NA	False	AATAAA	-34	NA	121978166	121983370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
ENSMUSG00000060802.9_1	chr2	+	448	3	ISM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	3286	194	3286	-194	3prime_fragment	FALSE	canonical	3	168	junction_1	10	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCTCTGTACTTCTCAT	NA	False	NA	NA	False	AATAAA	-34	NA	121981452	121983370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_121981633_121982127_121982157_121983131
ENSMUSG00000060803.7_0	chr19	-	756	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	61	4	1	0	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGAGGTGTCTTTGGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	4087924	4085410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
ENSMUSG00000060860.9_0	chr7	-	994	4	FSM	ENSMUSG00000060860.9	ENSMUST00000079496.9	1238	4	237	7	-2	-7	multi-exon	FALSE	canonical	3	9878	junction_1	292.246851518066	4081	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCAGTTTCTATGCCTG	NA	False	NA	-32	True	AATAAA	-8	NA	4815352	4811019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4811484_4813420_4813612_4814407_4814556_4815161
ENSMUSG00000060862.11_0	chr4	-	2137	1	ISM	ENSMUSG00000060862.11	ENSMUST00000049583.8	7192	19	66821	6	9788	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAACTGTGGCTTGTGTG	NA	False	NA	-4	True	AATAAA	-14	NA	136709185	136707048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136707000_136709200
ENSMUSG00000060862.11_12	chr4	-	4698	8	ISM	ENSMUSG00000060862.11	ENSMUST00000049583.8	7192	19	53321	6	-3712	-6	3prime_fragment	TRUE	canonical	1	1	junction_5	7.51053681605424	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAACTGTGGCTTGTGTG	NA	False	NA	-4	True	AATAAA	-14	NA	136722685	136707048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136710556_136712124_136712352_136713793_136713881_136714519_136714683_136715858_136716077_136718808_136718974_136721655_136721863_136722561
ENSMUSG00000060862.11_15	chr4	-	6653	18	NIC	ENSMUSG00000060862.11	novel	7192	19	NA	NA	-26632	-13	combination_of_known_junctions	FALSE	canonical	3	15	junction_6	4.34578107465032	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGGAAGCAACTGTGGC	NA	False	NA	-11	True	AATAAA	-7	NA	136745605	136707055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_136710556_136712124_136712352_136713793_136713881_136714519_136714683_136715858_136716074_136718808_136718974_136721655_136721863_136722561_136723024_136723335_136723505_136725131_136725266_136725807_136726010_136726786_136726924_136728204_136728286_136728511_136728705_136734348_136734492_136735045_136735209_136744587_136744722_136745334
ENSMUSG00000060862.11_18	chr4	-	3538	13	ISM	ENSMUSG00000060862.11	ENSMUST00000049583.8	7192	19	30131	10959	-26902	-5826	internal_fragment	FALSE	canonical	3	15	junction_1	4.65698400254929	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTTGTTGGAAAAGTTAA	NA	False	NA	NA	False	NA	NA	NA	136745875	136718001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136718974_136721655_136721863_136722561_136723024_136723335_136723505_136725131_136725266_136725807_136726010_136726786_136726924_136728204_136728286_136728511_136728705_136734348_136734492_136735045_136735209_136744587_136744722_136745334
ENSMUSG00000060862.11_20	chr4	-	3886	5	ISM	ENSMUSG00000060862.11	ENSMUST00000049583.8	7192	19	-104	24758	2	9988	5prime_fragment	FALSE	canonical	3	17	junction_3	2.06155281280883	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	9680	False	NA	NA	False	NA	NA	NA	136776110	136731800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136734492_136735045_136735209_136744587_136744722_136745334_136746079_136775956
ENSMUSG00000060862.11_28	chr4	-	3668	2	ISM	ENSMUSG00000060862.11	ENSMUST00000049583.8	7192	19	63714	13	6681	-13	3prime_fragment	FALSE	canonical	3	26	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGGAAGCAACTGTGGC	NA	False	NA	-11	True	AATAAA	-7	NA	136712292	136707055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136710556_136712124
ENSMUSG00000060862.11_30	chr4	-	3897	14	ISM	ENSMUSG00000060862.11	ENSMUST00000049583.8	7192	19	-95	10948	11	-5815	5prime_fragment	FALSE	canonical	3	15	junction_1	4.47478140684584	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTTAAATGAAATTCTC	9689	False	NA	NA	False	NA	NA	NA	136776101	136717990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_136718974_136721655_136721863_136722561_136723024_136723335_136723505_136725131_136725266_136725807_136726010_136726786_136726924_136728204_136728286_136728511_136728705_136734348_136734492_136735045_136735209_136744587_136744722_136745334_136746079_136775956
ENSMUSG00000060862.11_6	chr4	-	7280	19	NIC	ENSMUSG00000060862.11	novel	7192	19	NA	NA	8	-7	combination_of_known_junctions	FALSE	canonical	3	15	junction_6	4.22697101369495	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCAACTGTGGCTTGTGT	9686	False	NA	-5	True	AATAAA	-13	NA	136776104	136707049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_136710556_136712124_136712352_136713793_136713881_136714519_136714683_136715858_136716074_136718808_136718974_136721655_136721863_136722561_136723024_136723335_136723505_136725131_136725266_136725807_136726010_136726786_136726924_136728204_136728286_136728511_136728705_136734348_136734492_136735045_136735209_136744587_136744722_136745334_136746079_136775956
ENSMUSG00000060904.15_1	chr10	+	1747	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	328	5	328	-5	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	1097	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAACGAGATGTCTTTAGT	NA	False	NA	9	True	AATAAA	-18	NA	88567257	88579951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
ENSMUSG00000060923.6_0	chr11	-	667	4	FSM	ENSMUSG00000060923.6	ENSMUST00000074613.4	863	4	183	13	183	-13	multi-exon	FALSE	canonical	3	29	junction_1	6.84754619472471	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTAAAATTACCTTTGT	NA	False	NA	NA	False	AATAAA	-2	NA	30599404	30456003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_30456440_30582207_30582318_30583685_30583703_30599300
ENSMUSG00000060935.7_0	chr10	+	3483	3	FSM	ENSMUSG00000060935.7	ENSMUST00000095383.6	3616	3	129	4	13	-4	multi-exon	FALSE	canonical	3	175	junction_1	7	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGATGGAATGTTTCAT	NA	False	NA	13	True	AATAAA	-13	NA	84938619	84953445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_84938862_84946662_84946730_84950271
ENSMUSG00000060935.7_8	chr10	+	2455	1	ISM	ENSMUSG00000060935.7	ENSMUST00000095383.6	3616	3	12500	4	12384	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGATGGAATGTTTCAT	NA	False	NA	13	True	AATAAA	-13	NA	84950990	84953445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_84951000_84953400
ENSMUSG00000060938.15_0	chr11	+	519	4	FSM	ENSMUSG00000060938.15	ENSMUST00000073471.13	526	4	6	1	6	0	multi-exon	FALSE	canonical	3	13360	junction_1	1585.12172683642	2880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTGTCTTGTGTGGTGT	NA	False	NA	32	True	ATTAAA	-13	NA	68792414	68795359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_68792451_68793095_68793269_68794004_68794146_68795190
ENSMUSG00000060938.15_1	chr11	+	484	3	ISM	ENSMUSG00000060938.15	ENSMUST00000167436.3	606	4	634	0	-584	0	3prime_fragment	FALSE	canonical	3	14740	junction_2	1226.5	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTGTCTTGTGTGGTGT	NA	False	NA	32	True	ATTAAA	-13	NA	68793094	68795359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_68793269_68794004_68794146_68795190
ENSMUSG00000060950.13_0	chr12	+	2410	3	FSM	ENSMUSG00000060950.13	ENSMUST00000084947.10	2433	3	21	2	10	-2	multi-exon	FALSE	canonical	3	213	junction_2	1	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTATTGTCTTGTTCCCA	NA	False	NA	3	True	AATAAA	-15	NA	111644559	111650334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_111645397_111647235_111647503_111649028
ENSMUSG00000060950.13_1	chr12	+	1979	4	NIC	ENSMUSG00000060950.13	novel	2131	4	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	70.7153920067383	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTATTGTCTTGTTCCCA	NA	False	NA	3	True	AATAAA	-15	NA	111644549	111650334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_111644596_111645036_111645397_111647235_111647503_111649028
ENSMUSG00000060950.13_11	chr12	+	1063	1	ISM	ENSMUSG00000060950.13	ENSMUST00000084947.10	2433	3	4733	2	4722	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTATTGTCTTGTTCCCA	NA	False	NA	3	True	AATAAA	-15	NA	111649271	111650334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_111649300_111650300
ENSMUSG00000060950.13_2	chr12	+	3926	2	ISM	ENSMUSG00000060950.13	ENSMUST00000084947.10	2433	3	31	2	20	-2	intron_retention	FALSE	canonical	3	215	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTATTGTCTTGTTCCCA	NA	False	NA	3	True	AATAAA	-15	NA	111644569	111650334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_111645397_111647235
ENSMUSG00000060981.8_0	chr13	+	416	1	FSM	ENSMUSG00000060981.8	ENSMUST00000102972.6	470	1	37	17	37	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTTTTACGTTTTGAAA	4598	False	NA	NA	False	ATTAAA	-10	NA	23715256	23715672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_23715300_23715700
ENSMUSG00000060985.16_0	chr1	-	3482	18	FSM	ENSMUSG00000060985.16	ENSMUST00000167528.9	3210	18	-279	7	-21	-7	multi-exon	FALSE	canonical	2	2	junction_17	3.94424814452711	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTAATTGTTTGTGAT	NA	False	NA	NA	False	GATAAA	-10	NA	156131197	156082874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156083416_156087300_156087506_156090398_156090543_156090975_156091159_156094782_156094942_156098135_156098271_156098768_156098970_156104131_156104199_156104867_156105081_156111834_156112056_156112955_156113165_156115797_156115952_156120896_156120954_156122004_156122089_156128166_156128361_156129314_156129477_156129936_156130173_156130880
ENSMUSG00000060985.16_4	chr1	-	3402	18	NIC	ENSMUSG00000060985.16	novel	3210	18	NA	NA	5	-7	combination_of_known_junctions	TRUE	canonical	0	0	junction_15	4.86211254582866	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTAATTGTTTGTGAT	NA	False	NA	NA	False	GATAAA	-10	NA	156131171	156082874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_156083416_156087300_156087506_156090398_156090543_156090975_156091159_156094782_156094942_156098135_156098271_156098768_156098970_156104131_156104199_156104867_156105081_156111834_156112056_156112955_156113165_156115797_156115952_156120896_156120954_156122004_156122089_156128166_156128307_156129314_156129477_156129936_156130173_156130880
ENSMUSG00000060985.16_6	chr1	-	3730	18	FSM	ENSMUSG00000060985.16	ENSMUST00000121146.10	3759	18	20	9	20	-7	multi-exon	FALSE	canonical	2	2	junction_17	4.02242846994794	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTAATTGTTTGTGAT	NA	False	NA	NA	False	GATAAA	-10	NA	156131214	156082874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156083416_156087300_156087506_156090398_156090543_156090975_156091159_156094782_156094942_156098135_156098271_156098768_156098970_156104131_156104199_156104867_156105081_156111834_156112056_156112955_156113165_156115797_156115952_156120896_156120954_156122004_156122089_156128166_156128361_156129083_156129477_156129936_156130173_156130880
ENSMUSG00000060985.16_9	chr1	-	3666	18	NIC	ENSMUSG00000060985.16	novel	3759	18	NA	NA	-28	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	4.86211254582866	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTAATTGTTTGTGAT	NA	False	NA	NA	False	GATAAA	-10	NA	156131204	156082874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_156083416_156087300_156087506_156090398_156090543_156090975_156091159_156094782_156094942_156098135_156098271_156098768_156098970_156104131_156104199_156104867_156105081_156111834_156112056_156112955_156113165_156115797_156115952_156120896_156120954_156122004_156122089_156128166_156128307_156129083_156129477_156129936_156130173_156130880
ENSMUSG00000060989.9_0	chr4	+	1488	2	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-51	384	multi-exon	FALSE	canonical	3	4269	junction_1	0	117	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTGTGTAGTTCAGTT	-3	True	NA	NA	False	NA	NA	NA	12232781	12234335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_12232839_12232904
ENSMUSG00000060989.9_5	chr4	+	782	1	FSM	ENSMUSG00000060989.9	ENSMUST00000125165.2	1119	1	721	-384	721	384	mono-exon	FALSE	NA	NA	NA	NA	NA	304	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTGTGTAGTTCAGTT	412	False	NA	NA	False	NA	NA	NA	12233553	12234335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_12233600_12234300
ENSMUSG00000060989.9_7	chr4	+	1481	2	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-45	384	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTGTGTAGTTCAGTT	3	True	NA	NA	False	NA	NA	NA	12232787	12234335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_12232839_12232905
ENSMUSG00000060992.10_0	chr15	+	1680	9	FSM	ENSMUSG00000060992.10	ENSMUST00000100162.5	1676	9	-10	6	-1	-3	multi-exon	FALSE	canonical	3	554	junction_1	173.470458580128	928	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGCCTTTGTGTGATGG	NA	False	NA	26	True	AATAAA	-14	NA	103181326	103208289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103207119
ENSMUSG00000061013.7_0	chr18	-	3171	7	FSM	ENSMUSG00000061013.7	ENSMUST00000079788.7	3650	7	17	462	17	-462	multi-exon	FALSE	canonical	2	10	junction_4	2.3392781412697	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATATTGTGATTAGATAA	NA	False	NA	NA	False	AATAAA	-15	NA	7004763	6934979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_6937055_6937167_6937202_6992037_6992374_6992777_6992935_7000592_7000753_7002356_7002624_7004621
ENSMUSG00000061024.9_0	chr1	+	2013	1	FSM	ENSMUSG00000061024.9	ENSMUST00000072079.9	2048	1	28	7	28	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTAGTATTTGCATTAT	NA	False	NA	12	True	AATAAA	-12	NA	9615660	9617673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_9615700_9617700
ENSMUSG00000061028.8_1	chr7	-	2398	20	NIC	ENSMUSG00000061028.8	novel	2151	21	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	190	junction_19	27.1360581324836	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCACCACATGCTGTCCC	NA	False	NA	-10	True	AATAAA	-20	NA	19338385	19314968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
ENSMUSG00000061028.8_17	chr7	-	2167	21	NNC	ENSMUSG00000061028.8	novel	2180	21	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	62.3441256254348	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCACCACATGCTGTCC	NA	False	NA	-11	True	AATAAA	-19	NA	19338384	19314969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_19315084_19315305_19315331_19316156_19316264_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
ENSMUSG00000061028.8_33	chr7	-	2389	20	NIC	ENSMUSG00000061028.8	novel	2180	21	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	13	junction_13	58.629500104883	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCACCACATGCTGTCCC	NA	False	NA	-10	True	AATAAA	-20	NA	19338392	19314968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325030_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
ENSMUSG00000061028.8_4	chr7	-	2143	21	FSM	ENSMUSG00000061028.8	ENSMUST00000086041.7	2180	21	27	10	0	-2	multi-exon	FALSE	canonical	3	161	junction_6	32.5501152071694	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCACCACATGCTGTCC	NA	False	NA	-11	True	AATAAA	-19	NA	19338384	19314969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
ENSMUSG00000061028.8_5	chr7	-	2148	21	FSM	ENSMUSG00000061028.8	ENSMUST00000208068.2	2151	21	2	1	0	-1	multi-exon	TRUE	canonical	3	34	junction_6	53.6276747584678	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCACCACATGCTGTCCC	NA	False	NA	-10	True	AATAAA	-20	NA	19338384	19314968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318704_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
ENSMUSG00000061032.10_0	chr10	-	1923	13	FSM	ENSMUSG00000061032.10	ENSMUST00000062678.11	1984	13	57	4	4	-4	multi-exon	FALSE	canonical	3	782	junction_1	71.0948115000119	1113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACATGGCTGCTTCTCCC	NA	False	NA	-23	True	AATAAA	-15	NA	78248820	78236223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78247237_78247321_78248653
ENSMUSG00000061032.10_2	chr10	-	1143	6	ISM	ENSMUSG00000061032.10	ENSMUST00000219374.2	1852	12	7835	6	581	-4	3prime_fragment	FALSE	canonical	3	782	junction_1	63.316980344928	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACATGGCTGCTTCTCCC	3648	False	NA	-23	True	AATAAA	-15	NA	78240991	78236223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758
ENSMUSG00000061046.10_12	chr17	-	1288	9	FSM	ENSMUSG00000061046.10	ENSMUST00000077938.10	1405	9	95	22	4	-9	multi-exon	FALSE	canonical	3	40	junction_4	8.07387763097757	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACACACAGTGGATCCTTC	4348	False	NA	-23	True	AATAAA	-26	NA	26004552	26001784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
ENSMUSG00000061046.10_15	chr17	-	1828	7	ISM	ENSMUSG00000061046.10	ENSMUST00000140738.8	1194	9	-40	2987	2	-5	intron_retention	FALSE	canonical	3	40	junction_3	8.17856276425687	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGCCCAGTGTGGTACCA	4346	False	NA	-42	True	AATAAA	-7	NA	26004554	26001803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977
ENSMUSG00000061046.10_16	chr17	-	2029	5	FSM	ENSMUSG00000061046.10	ENSMUST00000129917.8	1790	5	-239	0	-7	0	multi-exon	FALSE	canonical	3	51	junction_2	4.7169905660283	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTGCAGGTCTGTTTAT	4352	False	NA	-2	True	NA	NA	NA	26004548	26001763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26002557_26002758_26002861_26003048_26003547_26003634_26003700_26003977
ENSMUSG00000061046.10_17	chr17	-	1401	7	NIC	ENSMUSG00000061046.10	novel	1128	8	NA	NA	2	1	intron_retention	FALSE	canonical	2	5	junction_6	18.9685412078935	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTGGTACCAGACACACA	4362	False	NA	-34	True	AATAAA	-15	NA	26004538	26001795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004396
ENSMUSG00000061046.10_3	chr17	-	1612	8	ISM	ENSMUSG00000061046.10	ENSMUST00000140738.8	1194	9	-38	2968	4	-9	5prime_fragment	FALSE	canonical	3	40	junction_3	8.60232526704263	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACACACAGTGGATCCTTC	4348	False	NA	-23	True	AATAAA	-26	NA	26004552	26001784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
ENSMUSG00000061046.10_5	chr17	-	1466	7	NIC	ENSMUSG00000061046.10	novel	1405	9	NA	NA	0	1	intron_retention	FALSE	canonical	3	42	junction_6	7.16472842006823	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGCAGGTCTGTTTATTA	4360	False	NA	0	True	NA	NA	NA	26004540	26001761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003547_26003634_26003700_26003977_26004169_26004401
ENSMUSG00000061046.10_6	chr17	-	258	1	ISM	ENSMUSG00000061046.10	ENSMUST00000133071.8	1128	8	2522	14	2245	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGATCCTTCCAGAGGTG	6866	False	NA	-15	True	AATAAA	-34	NA	26002034	26001776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26001800_26002000
ENSMUSG00000061046.10_7	chr17	-	1749	4	ISM	ENSMUSG00000061046.10	ENSMUST00000129917.8	1790	5	287	32	257	1	intron_retention	FALSE	canonical	3	51	junction_2	4.92160768674447	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTGGTACCAGACACACA	4878	False	NA	-34	True	AATAAA	-15	NA	26004022	26001795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26002557_26002758_26002861_26003048_26003547_26003634
ENSMUSG00000061046.10_9	chr17	-	1090	8	FSM	ENSMUSG00000061046.10	ENSMUST00000138759.8	1074	8	-2	-14	-2	-7	multi-exon	FALSE	canonical	3	7	junction_7	17.2496672549984	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACAGTGGATCCTTCCA	4357	False	NA	-21	True	AATAAA	-28	NA	26004543	26001782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004401
ENSMUSG00000061048.9_0	chr8	+	3228	16	NNC	ENSMUSG00000061048.9	novel	4384	16	NA	NA	-23	-1176	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	12.1039938312388	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAGGTGCTAGGGGAGT	NA	False	NA	3	True	ATTAAA	-17	NA	107237499	107282753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_107237639_107237855_107237974_107262042_107262114_107263192_107263319_107263447_107263604_107263705_107263851_107265625_107265802_107266426_107266556_107267938_107268125_107270282_107270525_107270748_107270895_107271634_107271860_107274253_107274464_107279020_107279152_107279497_107279645_107281872
ENSMUSG00000061048.9_1	chr8	+	3231	16	FSM	ENSMUSG00000061048.9	ENSMUST00000080797.8	4384	16	-23	1176	-23	-1176	multi-exon	FALSE	canonical	3	35	junction_1	6.02218122167265	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAGGTGCTAGGGGAGT	NA	False	NA	3	True	ATTAAA	-17	NA	107237499	107282753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_107237639_107237855_107237974_107262039_107262114_107263192_107263319_107263447_107263604_107263705_107263851_107265625_107265802_107266426_107266556_107267938_107268125_107270282_107270525_107270748_107270895_107271634_107271860_107274253_107274464_107279020_107279152_107279497_107279645_107281872
ENSMUSG00000061048.9_8	chr8	+	2138	8	ISM	ENSMUSG00000061048.9	ENSMUST00000080797.8	4384	16	30446	1176	30446	-1176	3prime_fragment	FALSE	canonical	3	46	junction_1	3.65334624358412	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAGGTGCTAGGGGAGT	NA	False	NA	3	True	ATTAAA	-17	NA	107267968	107282753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_107268125_107270282_107270525_107270748_107270895_107271634_107271860_107274253_107274464_107279020_107279152_107279497_107279645_107281872
ENSMUSG00000061062.6_0	chr17	+	1944	1	FSM	ENSMUSG00000061062.6	ENSMUST00000079363.6	1444	1	6	-506	6	506	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CATTTCTATAAAAAAAAAAA	NA	False	NA	64	True	AATAAA	-7	NA	78799016	78800960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_78799000_78801000
ENSMUSG00000061079.15_0	chr7	+	2997	16	FSM	ENSMUSG00000061079.15	ENSMUST00000211798.2	2631	16	3	-369	3	0	multi-exon	TRUE	canonical	3	74	junction_4	56.3191698171137	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAATACTTTTTGTTTG	NA	False	NA	12	True	AATACA	-10	NA	109660919	109694594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671328_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
ENSMUSG00000061079.15_1	chr7	+	3000	16	FSM	ENSMUSG00000061079.15	ENSMUST00000084727.11	3003	16	3	0	3	0	multi-exon	FALSE	canonical	3	81	junction_4	55.3423285861133	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAATACTTTTTGTTTG	NA	False	NA	12	True	AATACA	-10	NA	109660919	109694594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
ENSMUSG00000061079.15_28	chr7	+	2225	9	ISM	ENSMUSG00000061079.15	ENSMUST00000169638.4	2914	15	15395	7	-14512	0	3prime_fragment	FALSE	canonical	3	220	junction_6	18.2444340827552	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAATACTTTTTGTTTG	NA	False	NA	12	True	AATACA	-10	NA	109676323	109694594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
ENSMUSG00000061086.13_2	chr11	+	623	5	ISM	ENSMUSG00000061086.13	ENSMUST00000123074.8	677	6	3603	-1	-1036	1	3prime_fragment	FALSE	canonical	1	3	junction_1	17.5267652463311	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATCCCTCCGTTGATTT	NA	False	NA	7	True	AATAAA	-21	NA	104474753	104478036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_104474954_104475264_104475439_104475762_104475841_104476552_104476598_104477910
ENSMUSG00000061086.13_3	chr11	+	555	4	ISM	ENSMUSG00000061086.13	ENSMUST00000123074.8	677	6	3985	-4	-654	-2	3prime_fragment	FALSE	canonical	3	41	junction_3	1.69967317119759	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCCTCCGTTGATTTGTT	NA	False	NA	10	True	AATAAA	-24	NA	104475135	104478039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_104475439_104475762_104475841_104476552_104476598_104477910
ENSMUSG00000061104.6_0	chr8	+	699	1	FSM	ENSMUSG00000061104.6	ENSMUST00000074053.6	789	1	10	80	10	-80	mono-exon	FALSE	NA	NA	NA	NA	NA	301	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCCTTATGTAAAATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	96551983	96552682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_96552000_96552700
ENSMUSG00000061111.9_0	chr11	-	1182	5	FSM	ENSMUSG00000061111.9	ENSMUST00000034913.5	1205	5	20	3	-6	-3	multi-exon	FALSE	canonical	3	334	junction_4	30.2861354418156	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGGCTCCATGGCAGTC	NA	False	NA	-27	True	AATAAA	-14	NA	120440533	120433716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120434575_120434729_120434832_120435506_120435626_120435702_120435755_120440482
ENSMUSG00000061111.9_1	chr11	-	1252	4	FSM	ENSMUSG00000061111.9	ENSMUST00000135515.2	1256	4	2	2	2	-2	multi-exon	FALSE	canonical	3	334	junction_3	32.7244387100664	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCCATGGCAGTCT	NA	False	NA	-26	True	AATAAA	-15	NA	120440525	120433715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120434575_120434729_120434832_120435506_120435755_120440482
ENSMUSG00000061111.9_2	chr11	-	1134	4	ISM	ENSMUSG00000061111.9	ENSMUST00000034913.5	1205	5	4797	2	4771	-2	3prime_fragment	FALSE	canonical	3	389	junction_1	9.46337971105226	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCCATGGCAGTCT	2001	False	NA	-26	True	AATAAA	-15	NA	120435756	120433715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120434575_120434729_120434832_120435506_120435626_120435702
ENSMUSG00000061118.9_0	chr5	+	1117	1	FSM	ENSMUSG00000061118.9	ENSMUST00000071263.7	1661	1	42	502	42	-502	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCGAGTGAAATTTGTTTT	3174	False	NA	45	True	AAAAAG	-16	NA	135093097	135094214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135093100_135094200
ENSMUSG00000061119.8_1	chr7	+	2347	9	FSM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	45	575	2	-6	multi-exon	FALSE	canonical	3	95	junction_2	10.1665812837945	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCATTTATTGAAAAAGT	NA	False	NA	96	True	AATAAA	-18	NA	92524504	92583216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
ENSMUSG00000061119.8_11	chr7	+	1969	7	ISM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	29883	584	29835	-15	3prime_fragment	FALSE	canonical	3	101	junction_1	10.0332779621949	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTGCAAACCATTTAT	NA	False	NA	87	True	AATAAA	-9	NA	92554342	92583207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
ENSMUSG00000061119.8_15	chr7	+	698	1	ISM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	58059	575	58011	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCATTTATTGAAAAAGT	NA	False	NA	96	True	AATAAA	-18	NA	92582518	92583216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_92582500_92583200
ENSMUSG00000061126.6_2	chr17	+	2573	14	FSM	ENSMUSG00000061126.6	ENSMUST00000237491.2	2618	14	-4	49	-4	-3	multi-exon	FALSE	canonical	3	12	junction_1	21.761482720107	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACAATTTGTGCTCCGT	NA	False	NA	NA	False	ACTAAA	-15	NA	32671692	32712245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_32671771_32684452_32684556_32687434_32687658_32689777_32689923_32700047_32700102_32700753_32700882_32701060_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
ENSMUSG00000061126.6_3	chr17	+	2242	12	FSM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	149	-792	149	-3	multi-exon	FALSE	canonical	3	23	junction_2	19.6026646864634	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACAATTTGTGCTCCGT	1485	False	NA	NA	False	ACTAAA	-15	NA	32687584	32712245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_32687658_32689777_32689923_32700047_32700102_32700753_32700882_32701060_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
ENSMUSG00000061126.6_5	chr17	+	1977	9	ISM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	13312	-793	3523	-2	3prime_fragment	FALSE	canonical	3	28	junction_1	14.0973180073374	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACAATTTGTGCTCCGTT	NA	False	NA	NA	False	ACTAAA	-16	NA	32700747	32712246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_32700882_32701060_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
ENSMUSG00000061126.6_6	chr17	+	1931	8	ISM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	13536	-792	3747	-3	3prime_fragment	FALSE	canonical	3	49	junction_7	8.14912039825809	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACAATTTGTGCTCCGT	NA	False	NA	NA	False	ACTAAA	-15	NA	32700971	32712245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
ENSMUSG00000061126.6_7	chr17	+	2925	7	NIC	ENSMUSG00000061126.6	novel	1599	12	NA	NA	3746	-3	intron_retention	FALSE	canonical	3	49	junction_6	8.80183061767393	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACAATTTGTGCTCCGT	NA	False	NA	NA	False	ACTAAA	-15	NA	32700970	32712245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
ENSMUSG00000061130.14_1	chr17	+	3254	6	FSM	ENSMUSG00000061130.14	ENSMUST00000112304.10	3323	6	-7	76	3	-76	multi-exon	FALSE	canonical	3	708	junction_5	340.544857544494	1153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACGGTGTGACATATTAC	NA	False	NA	23	True	AATAAA	-12	NA	85265429	85324549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85322836
ENSMUSG00000061130.14_2	chr17	+	2581	6	FSM	ENSMUSG00000061130.14	ENSMUST00000080217.14	2670	6	3	86	3	-86	multi-exon	FALSE	canonical	3	718	junction_5	336.634519917373	1340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTACTCTCTCAGTTTC	NA	False	NA	16	True	AATAAA	-26	NA	85265429	85322033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85320993
ENSMUSG00000061130.14_5	chr17	+	1837	6	FSM	ENSMUSG00000061130.14	ENSMUST00000234332.2	1290	6	-374	-173	3	0	multi-exon	FALSE	canonical	3	54	junction_5	598.858046618729	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACTGTGGTTTTATTCCA	NA	False	NA	11	True	AATAAA	-19	NA	85265429	85331419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85331123
ENSMUSG00000061132.14_1	chr19	-	1774	17	FSM	ENSMUSG00000061132.14	ENSMUST00000054769.7	2097	17	315	8	-72	-8	multi-exon	FALSE	canonical	0	0	junction_13	9.12221704137761	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCAACAGGTGTGATGC	NA	False	NA	NA	False	AATAAA	-8	NA	40982663	40917378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_40917737_40922870_40923027_40924716_40924801_40926094_40926172_40927810_40927843_40928615_40928701_40931745_40931789_40932570_40932599_40933930_40934001_40939397_40939470_40940794_40940877_40948142_40948307_40950788_40950946_40952686_40952728_40956942_40956993_40961029_40961096_40982454
ENSMUSG00000061132.14_2	chr19	-	576	3	NNC	ENSMUSG00000061132.14	novel	1701	17	NA	NA	58684	-8	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	6.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCAACAGGTGTGATGC	NA	False	NA	NA	False	AATAAA	-8	NA	40923907	40917378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_40917737_40922870_40923027_40923845
ENSMUSG00000061136.17_0	chr2	-	3828	26	FSM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-25	-238	-8	1	multi-exon	FALSE	canonical	3	422	junction_25	70.0256410181299	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGTCTTTATTTCTACA	NA	False	NA	-2	True	ATTAAA	-17	NA	53081224	53028248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
ENSMUSG00000061136.17_13	chr2	-	3823	26	NNC	ENSMUSG00000061136.17	novel	3773	26	NA	NA	-3	94	at_least_one_novel_splicesite	FALSE	canonical	3	206	junction_9	120.929824278381	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCATGGTAGCTACAGTAC	NA	False	NA	-1	True	AATAAA	-24	NA	53081240	53028155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035940_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081160
ENSMUSG00000061136.17_3	chr2	-	3838	26	NNC	ENSMUSG00000061136.17	novel	7374	26	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	canonical	3	206	junction_9	102.895628672942	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGTCTTTATTTCTACAT	NA	False	NA	-1	True	ATTAAA	-18	NA	53081221	53028247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035940_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
ENSMUSG00000061136.17_4	chr2	-	3717	26	FSM	ENSMUSG00000061136.17	ENSMUST00000210789.3	3773	26	57	-1	-2	1	multi-exon	FALSE	canonical	3	232	junction_25	95.4321874421833	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGTCTTTATTTCTACA	NA	False	NA	-2	True	ATTAAA	-17	NA	53081239	53028248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081160
ENSMUSG00000061167.10_0	chr9	-	698	1	FSM	ENSMUSG00000061167.10	ENSMUST00000088480.4	615	1	-34	-49	-34	49	mono-exon	FALSE	NA	NA	NA	NA	NA	1226	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAAAAAAAGTG	NA	False	NA	NA	False	AATAAA	-15	NA	22097551	22096853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_22096900_22097600
ENSMUSG00000061175.13_0	chr3	-	7000	18	FSM	ENSMUSG00000061175.13	ENSMUST00000133154.7	7299	18	14	285	14	-285	multi-exon	FALSE	canonical	3	55	junction_17	18.4325197807334	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGCTTATTCTCCTAGT	8106	False	NA	-17	True	AATAAA	-13	NA	79475089	79363565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_79367049_79369435_79369552_79372854_79373056_79386793_79386951_79387865_79389187_79396265_79396436_79396552_79396700_79400138_79400228_79400582_79400785_79407644_79407775_79413513_79413586_79415145_79415236_79415393_79415495_79419637_79419710_79419804_79419906_79422409_79422557_79425371_79425499_79474815
ENSMUSG00000061175.13_1	chr3	-	2822	1	ISM	ENSMUSG00000061175.13	ENSMUST00000133154.7	7299	18	108716	285	7125	-285	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGCTTATTCTCCTAGT	NA	False	NA	-17	True	AATAAA	-13	NA	79366387	79363565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_79363600_79366400
ENSMUSG00000061175.13_2	chr3	-	7252	18	NIC	ENSMUSG00000061175.13	novel	7299	18	NA	NA	-192	-285	combination_of_known_junctions	TRUE	canonical	3	39	junction_17	21.062273788996	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGCTTATTCTCCTAGT	NA	False	NA	-17	True	AATAAA	-13	NA	79439375	79363565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_79367049_79369435_79369552_79372854_79373056_79386793_79386951_79387865_79389187_79396265_79396436_79396552_79396700_79400138_79400228_79400582_79400785_79407644_79407775_79413513_79413586_79415145_79415236_79415393_79415495_79419637_79419710_79419804_79419906_79422409_79422557_79425371_79425499_79438849
ENSMUSG00000061175.13_5	chr3	-	4455	5	ISM	ENSMUSG00000061175.13	ENSMUST00000154645.2	2737	10	19466	-3334	-14851	-285	3prime_fragment	FALSE	canonical	3	112	junction_2	10.6183802907977	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGCTTATTCTCCTAGT	NA	False	NA	-17	True	AATAAA	-13	NA	79388363	79363565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_79367049_79369435_79369552_79372854_79373056_79386793_79386951_79387865
ENSMUSG00000061175.13_8	chr3	-	3727	3	FSM	ENSMUSG00000061175.13	ENSMUST00000149475.8	3629	3	530	-628	530	-285	multi-exon	FALSE	canonical	3	112	junction_2	2	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGCTTATTCTCCTAGT	NA	False	NA	-17	True	AATAAA	-13	NA	79372982	79363565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_79367049_79369435_79369552_79372854
ENSMUSG00000061186.16_1	chr2	+	7732	23	NIC	ENSMUSG00000061186.16	novel	1763	6	NA	NA	0	-6	combination_of_known_junctions	TRUE	canonical	1	2	junction_1	13.1658210140958	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGTTAAAAAAAATCTATG	2763	False	NA	-15	True	AAAACA	-20	NA	10375320	10600046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_10375364_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135_10466284_10528755_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582339_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
ENSMUSG00000061186.16_11	chr2	+	7704	22	NIC	ENSMUSG00000061186.16	novel	7821	23	NA	NA	50	-9	combination_of_known_junctions	FALSE	canonical	2	2	junction_18	13.6521409449563	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAGTTAAAAAAAATCT	4753	False	NA	-18	True	AAAACA	-17	NA	10377310	10600043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_10377428_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135_10466284_10528755_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582625_10582943_10583945_10584204_10585354_10585484_10595240
ENSMUSG00000061186.16_16	chr2	+	6482	13	ISM	ENSMUSG00000061186.16	ENSMUST00000041105.7	7874	23	151495	12	151495	0	3prime_fragment	FALSE	canonical	3	40	junction_5	7.65352133915421	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCTATGGTGGTG	5439	False	NA	-9	True	AATAAA	-4	NA	10528755	10600052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582339_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
ENSMUSG00000061186.16_18	chr2	+	5600	5	ISM	ENSMUSG00000061186.16	ENSMUST00000041105.7	7874	23	205094	12	205094	0	3prime_fragment	FALSE	canonical	3	45	junction_1	10.2347447452294	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCTATGGTGGTG	NA	False	NA	-9	True	AATAAA	-4	NA	10582354	10600052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
ENSMUSG00000061186.16_19	chr2	+	5339	4	ISM	ENSMUSG00000061186.16	ENSMUST00000041105.7	7874	23	205540	14	205540	-2	3prime_fragment	FALSE	canonical	3	47	junction_1	9.97775303139718	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAAATCTATGGTGG	NA	False	NA	-11	True	AATAAA	-2	NA	10582800	10600050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_10582943_10583945_10584204_10585354_10585484_10595240
ENSMUSG00000061186.16_2	chr2	+	7789	24	NIC	ENSMUSG00000061186.16	novel	1813	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	13.9709393226675	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCTATGGTGGTG	2763	False	NA	-9	True	AATAAA	-4	NA	10375320	10600052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_10375364_10376219_10376271_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135_10466284_10528755_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582339_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
ENSMUSG00000061186.16_20	chr2	+	3385	1	ISM	ENSMUSG00000061186.16	ENSMUST00000116594.9	7821	23	219421	0	219407	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCTATGGTGGTG	1802	False	NA	-9	True	AATAAA	-4	NA	10596667	10600052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_10596700_10600100
ENSMUSG00000061186.16_30	chr2	+	4875	2	ISM	ENSMUSG00000061186.16	ENSMUST00000041105.7	7874	23	208151	21	208151	-9	3prime_fragment	FALSE	canonical	3	71	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAGTTAAAAAAAATCT	NA	False	NA	-18	True	AAAACA	-17	NA	10585411	10600043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_10585484_10595240
ENSMUSG00000061186.16_5	chr2	+	7923	24	NIC	ENSMUSG00000061186.16	novel	7821	23	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	14.3404460598235	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCTATGGTGGTG	4686	False	NA	-9	True	AATAAA	-4	NA	10377243	10600052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_10377428_10384995_10385047_10385833_10385878_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135_10466284_10528755_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582339_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
ENSMUSG00000061186.16_6	chr2	+	7864	23	FSM	ENSMUSG00000061186.16	ENSMUST00000041105.7	7874	23	-2	12	0	0	multi-exon	FALSE	canonical	3	38	junction_1	8.61768314629387	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCTATGGTGGTG	4701	False	NA	-9	True	AATAAA	-4	NA	10377258	10600052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_10377428_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135_10466284_10528755_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582339_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
ENSMUSG00000061186.16_7	chr2	+	7828	22	NIC	ENSMUSG00000061186.16	novel	7874	23	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	13.2706007225527	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCTATGGTGGTG	4686	False	NA	-9	True	AATAAA	-4	NA	10377243	10600052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_10377428_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135_10466284_10528755_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582339_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
ENSMUSG00000061186.16_9	chr2	+	2384	6	FSM	ENSMUSG00000061186.16	ENSMUST00000114864.9	1901	6	10	-493	-2	493	multi-exon	FALSE	canonical	3	38	junction_1	9.3936148526539	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTTGCTTTCCATC	4699	False	NA	NA	False	ATTAAA	-9	NA	10377256	10444441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_10377428_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757
ENSMUSG00000061207.12_0	chr17	-	1084	7	FSM	ENSMUSG00000061207.12	ENSMUST00000077477.12	1120	7	35	1	17	0	multi-exon	FALSE	canonical	3	81	junction_1	4.59770474137791	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTCTGTGTCCTTTG	5608	False	NA	-5	True	AATAAA	-15	NA	35055886	35042969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
ENSMUSG00000061207.12_1	chr17	-	3001	3	ISM	ENSMUSG00000061207.12	ENSMUST00000162055.8	587	5	5223	-195	-821	0	3prime_fragment	FALSE	canonical	3	81	junction_1	6.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTCTGTGTCCTTTG	9064	False	NA	-5	True	AATAAA	-15	NA	35046248	35042969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35043301_35043489_35043638_35043726
ENSMUSG00000061207.12_3	chr17	-	1298	6	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	9	0	intron_retention	FALSE	canonical	3	82	junction_5	4.14728827066554	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTCTTTCTGTGTCCTTT	5582	False	NA	-6	True	AATAAA	-14	NA	35055912	35042970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
ENSMUSG00000061207.12_5	chr17	-	3008	1	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	-550	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTCTGTGTCCTTTG	9335	False	NA	-5	True	AATAAA	-15	NA	35045977	35042969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35043000_35046000
ENSMUSG00000061207.12_6	chr17	-	1208	2	ISM	ENSMUSG00000061207.12	ENSMUST00000162055.8	587	5	7105	-195	380	0	intron_retention	FALSE	canonical	3	81	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTCTGTGTCCTTTG	7470	False	NA	-5	True	AATAAA	-15	NA	35044366	35042969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35043301_35043489
ENSMUSG00000061207.12_7	chr17	-	935	6	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	31.928670501604	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTCTGTGTCCTTTG	5609	False	NA	-5	True	AATAAA	-15	NA	35055885	35042969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35043301_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
ENSMUSG00000061232.17_1	chr17	-	1579	8	FSM	ENSMUSG00000061232.17	ENSMUST00000025181.18	1619	8	65	-25	-1	-4	multi-exon	FALSE	canonical	3	30	junction_6	28.3196045170126	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGGGTCACTATGCT	NA	False	NA	-15	True	AATAAA	-21	NA	34219256	34215001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUSG00000061232.17_17	chr17	-	1545	8	FSM	ENSMUSG00000061232.17	ENSMUST00000238098.2	1065	8	-31	-449	-1	-2	multi-exon	FALSE	canonical	0	0	junction_6	35.1840641107155	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGGGTCACTATGCTGT	NA	False	NA	-13	True	AATAAA	-23	NA	34219256	34214999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218485_34218707_34218978_34219167
ENSMUSG00000061232.17_3	chr17	-	1546	8	FSM	ENSMUSG00000061232.17	ENSMUST00000172912.8	1570	8	13	11	5	-4	multi-exon	FALSE	canonical	3	30	junction_6	28.0698836361489	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGGGTCACTATGCT	NA	False	NA	-15	True	AATAAA	-21	NA	34219250	34215001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34215451_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUSG00000061232.17_4	chr17	-	1597	8	NIC	ENSMUSG00000061232.17	novel	1619	8	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	33.148398551523	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGGGTCACTATGCTGT	NA	False	NA	-13	True	AATAAA	-23	NA	34219257	34214999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34215478_34215589_34215629_34215800_34215849_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUSG00000061232.17_6	chr17	-	1766	7	NIC	ENSMUSG00000061232.17	novel	1619	8	NA	NA	-1	-4	intron_retention	FALSE	canonical	3	37	junction_6	25.5907969568923	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGGGTCACTATGCT	NA	False	NA	-15	True	AATAAA	-21	NA	34219256	34215001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218978_34219167
ENSMUSG00000061232.17_8	chr17	-	1281	6	ISM	ENSMUSG00000061232.17	ENSMUST00000025181.18	1619	8	740	-25	77	-4	3prime_fragment	FALSE	canonical	3	56	junction_1	21.2452347598232	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGGGTCACTATGCT	NA	False	NA	-15	True	AATAAA	-21	NA	34218581	34215001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244
ENSMUSG00000061242.7_0	chr17	+	146	1	FSM	ENSMUSG00000061242.7	ENSMUST00000095268.6	483	1	369	-32	369	32	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAAAAAGTCATG	NA	False	NA	NA	False	AATAAA	-15	NA	45777082	45777228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_45777100_45777200
ENSMUSG00000061244.15_2	chr14	-	1371	1	ISM	ENSMUSG00000061244.15	ENSMUST00000162175.9	12699	18	53138	8055	6277	1610	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGTTTTTTTTATTTTT	NA	False	NA	-6	True	AATAAA	-12	NA	49250972	49249601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_49249600_49251000
ENSMUSG00000061244.15_3	chr14	-	4081	18	FSM	ENSMUSG00000061244.15	ENSMUST00000162175.9	12699	18	271	8347	14	1318	multi-exon	FALSE	canonical	3	137	junction_14	16.0953043938104	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49303839	49249893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_49251807_49252873_49253090_49253654_49253764_49254930_49255018_49256858_49256980_49260655_49260765_49270727_49270876_49272264_49272475_49273455_49273539_49274215_49274357_49274460_49274506_49275129_49275240_49276811_49276841_49279941_49280007_49286160_49286356_49288776_49288925_49289754_49289850_49303582
ENSMUSG00000061273.4_0	chrX	-	4105	4	FSM	ENSMUSG00000061273.4	ENSMUST00000059899.3	4234	4	130	-1	130	1	multi-exon	FALSE	canonical	3	129	junction_2	4.64279609239471	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGTGTTTGGTAGTGGG	NA	False	NA	-6	True	AATAAA	-15	NA	55643299	55630870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_55634664_55636437_55636542_55640749_55640803_55643144
ENSMUSG00000061273.4_1	chrX	-	2263	1	Genic_Genomic	ENSMUSG00000061273.4	novel	NA	NA	NA	NA	10296	1	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGTGTTTGGTAGTGGG	NA	False	NA	-6	True	AATAAA	-15	NA	55633133	55630870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_55630900_55633100
ENSMUSG00000061286.8_0	chr7	+	977	6	FSM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	38	5	-10	-5	multi-exon	FALSE	canonical	3	1190	junction_2	58.9528625259198	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATTCCGGTGTCTGGAG	NA	False	NA	26	True	ATTAAA	-38	NA	25358626	25367452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_25358809_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
ENSMUSG00000061286.8_3	chr7	+	2044	5	NIC	ENSMUSG00000061286.8	novel	1020	6	NA	NA	-1	-5	intron_retention	FALSE	canonical	3	1215	junction_4	52.4517635547176	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATTCCGGTGTCTGGAG	NA	False	NA	26	True	ATTAAA	-38	NA	25358635	25367452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_25358809_25362561_25363874_25364845_25364987_25365677_25365768_25367124
ENSMUSG00000061288.14_1	chr5	+	2944	18	ISM	ENSMUSG00000061288.14	ENSMUST00000111978.8	4467	21	17	10978	17	-9628	5prime_fragment	FALSE	canonical	0	0	junction_10	2.59491117648386	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAACTGAAAAAAT	1403	False	NA	NA	False	NA	NA	NA	117258210	117402304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_117258405_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629
ENSMUSG00000061288.14_2	chr5	+	3085	21	FSM	ENSMUSG00000061288.14	ENSMUST00000111978.8	4467	21	20	1362	20	-12	multi-exon	TRUE	canonical	0	0	junction_10	2.74727137356323	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAATGAAAAAA	1406	False	NA	9	True	ATTAAA	-15	NA	117258213	117411920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_117258405_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
ENSMUSG00000061288.14_8	chr5	+	2981	20	NIC	ENSMUSG00000061288.14	novel	4467	21	NA	NA	39	-12	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	2.94266542073566	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAATGAAAAAA	1425	False	NA	9	True	ATTAAA	-15	NA	117258232	117411920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_117258405_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
ENSMUSG00000061306.17_1	chr11	-	3965	15	NIC	ENSMUSG00000061306.17	novel	4554	16	NA	NA	-10	-2	combination_of_known_junctions	FALSE	canonical	3	70	junction_13	135.088576383748	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTCTCGAGTCGAGTTG	5045	False	NA	-14	True	AATAAA	-10	NA	120042123	119995279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_119996863_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120038546_120038665_120041805
ENSMUSG00000061306.17_25	chr11	-	3893	15	NIC	ENSMUSG00000061306.17	novel	4554	16	NA	NA	-10	-2	combination_of_known_junctions	FALSE	canonical	3	52	junction_14	135.716334571001	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTCTCGAGTCGAGTTG	5045	False	NA	-14	True	AATAAA	-10	NA	120042123	119995279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_119996863_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120041805
ENSMUSG00000061306.17_35	chr11	-	3964	15	NIC	ENSMUSG00000061306.17	novel	4052	17	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_13	156.31776897704	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCGAGTCGAGTTGGT	5045	False	NA	-12	True	AATAAA	-12	NA	120042123	119995277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_119996860_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120038546_120038665_120041805
ENSMUSG00000061306.17_4	chr11	-	4013	16	FSM	ENSMUSG00000061306.17	ENSMUST00000045402.14	4554	16	47	494	-12	-2	multi-exon	FALSE	canonical	3	392	junction_1	66.2227218474814	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTCTCGAGTCGAGTTG	5043	False	NA	-14	True	AATAAA	-10	NA	120042125	119995279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_119996863_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ENSMUSG00000061306.17_7	chr11	-	4008	16	NIC	ENSMUSG00000061306.17	novel	4554	16	NA	NA	-10	-2	combination_of_known_junctions	FALSE	canonical	3	189	junction_1	103.515409480908	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTCTCGAGTCGAGTTG	5045	False	NA	-14	True	AATAAA	-10	NA	120042123	119995279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_119996860_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ENSMUSG00000061313.11_0	chr8	-	1888	1	ISM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	27045	3	7491	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCATGTGGCCTTATCT	NA	False	NA	-6	True	AATAAA	-19	NA	26217263	26215375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_26215400_26217300
ENSMUSG00000061313.11_1	chr8	-	2943	3	ISM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	20499	3	945	-3	3prime_fragment	FALSE	canonical	3	52	junction_1	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCATGTGGCCTTATCT	NA	False	NA	-6	True	AATAAA	-19	NA	26223809	26215375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_26217391_26217656_26217765_26222989
ENSMUSG00000061313.11_11	chr8	-	3326	12	ISM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	7431	3	3856	-3	3prime_fragment	FALSE	canonical	3	37	junction_9	7.63960969969254	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCATGTGGCCTTATCT	NA	False	NA	-6	True	AATAAA	-19	NA	26236877	26215375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844
ENSMUSG00000061313.11_29	chr8	-	2294	13	NIC	ENSMUSG00000061313.11	novel	4246	18	NA	NA	3	-913	combination_of_known_junctions	FALSE	canonical	1	18	junction_12	12.709084677243	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTATCTCAGATACATAA	NA	False	NA	NA	False	AATAAA	-9	NA	26244438	26225212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244293
ENSMUSG00000061313.11_3	chr8	-	4280	18	NIC	ENSMUSG00000061313.11	novel	4246	18	NA	NA	15	-3	combination_of_known_junctions	FALSE	canonical	1	18	junction_17	11.4631952042464	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCATGTGGCCTTATCT	NA	False	NA	-6	True	AATAAA	-19	NA	26244426	26215375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244293
ENSMUSG00000061313.11_4	chr8	-	4343	18	FSM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	-100	3	33	-3	multi-exon	FALSE	canonical	3	20	junction_17	11.1150012413475	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCATGTGGCCTTATCT	NA	False	NA	-6	True	AATAAA	-19	NA	26244408	26215375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244212
ENSMUSG00000061313.11_9	chr8	-	4149	17	ISM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	1106	3	0	-3	3prime_fragment	FALSE	canonical	3	37	junction_9	7.82623792124926	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCATGTGGCCTTATCT	NA	False	NA	-6	True	AATAAA	-19	NA	26243202	26215375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974
ENSMUSG00000061315.15_0	chr10	+	822	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	58	5	-2	-5	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	3453	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGACTCAGCAGGTGCTAG	4970	False	NA	-5	True	AATAAA	-19	NA	127871501	127884497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
ENSMUSG00000061356.14_1	chr14	+	1077	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	20067	-20	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	14.4094640101991	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGGACTTTCTATATAAA	6283	False	NA	NA	False	AATAAA	-15	NA	65862782	65885873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_65862807_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
ENSMUSG00000061360.9_0	chr15	-	853	4	FSM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	11	799	11	150	multi-exon	FALSE	canonical	3	1228	junction_3	69.0426599204354	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTGAACGTCTACTTTT	NA	False	NA	-6	True	AATAAA	-20	NA	81756101	81749519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81750094_81754532_81754700_81755366_81755391_81756013
ENSMUSG00000061360.9_3	chr15	-	481	1	ISM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	6112	799	1798	150	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTGAACGTCTACTTTT	NA	False	NA	-6	True	AATAAA	-20	NA	81750000	81749519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_81749500_81750000
ENSMUSG00000061371.8_0	chr10	+	2362	4	FSM	ENSMUSG00000061371.8	ENSMUST00000210325.2	2360	4	0	-2	0	-1	multi-exon	FALSE	canonical	3	37	junction_2	1.24721912892465	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTTATCTATATTATC	NA	False	NA	NA	False	AATAAA	-13	NA	81883956	81897417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81884064_81894203_81894331_81894516_81894578_81895350
ENSMUSG00000061371.8_1	chr10	+	2303	3	FSM	ENSMUSG00000061371.8	ENSMUST00000209622.2	2284	3	-24	5	-4	0	multi-exon	FALSE	canonical	1	2	junction_2	19	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGTTTTATCTATATTA	NA	False	NA	NA	False	AATAAA	-11	NA	81883952	81897415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81884064_81894203_81894331_81895350
ENSMUSG00000061371.8_5	chr10	+	2484	5	NNC	ENSMUSG00000061371.8	novel	2360	4	NA	NA	2	-15	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	16.2018517460196	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	81883958	81900564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_81884064_81894203_81894331_81894516_81894578_81895350_81897000_81900022
ENSMUSG00000061371.8_7	chr10	+	2664	5	NIC	ENSMUSG00000061371.8	novel	2360	4	NA	NA	2	-18	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	14.0423466699836	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	81883958	81900561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_81884064_81894203_81894331_81894516_81894578_81895350_81897183_81900022
ENSMUSG00000061374.15_0	chr7	-	2510	4	NNC	ENSMUSG00000061374.15	novel	2306	3	NA	NA	-33	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	181.586220720504	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACTGTCTTGTTTTTTGA	4239	False	NA	-5	True	AATAAA	-13	NA	5016270	5010058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_5010959_5011002_5012205_5015676_5016022_5016207
ENSMUSG00000061374.15_1	chr7	-	2540	3	FSM	ENSMUSG00000061374.15	ENSMUST00000077385.15	2546	3	2	4	2	-4	multi-exon	FALSE	canonical	3	184	junction_2	130	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTACTGTCTTGTTTTT	2834	False	NA	-8	True	AATAAA	-10	NA	5017675	5010061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_5012205_5015676_5016022_5017623
ENSMUSG00000061374.15_16	chr7	-	2604	3	FSM	ENSMUSG00000061374.15	ENSMUST00000165320.3	2653	3	44	5	0	-5	multi-exon	FALSE	canonical	2	9	junction_2	217.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATTACTGTCTTGTTTT	2857	False	NA	-9	True	AATAAA	-9	NA	5017652	5010062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_5012205_5015676_5016022_5017535
ENSMUSG00000061374.15_2	chr7	-	2556	3	FSM	ENSMUSG00000061374.15	ENSMUST00000208944.2	2306	3	-37	-213	-37	-3	multi-exon	FALSE	canonical	3	199	junction_2	122.5	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTACTGTCTTGTTTTTT	4235	False	NA	-7	True	AATAAA	-11	NA	5016274	5010060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_5012205_5015676_5016022_5016207
ENSMUSG00000061374.15_4	chr7	-	2499	4	NNC	ENSMUSG00000061374.15	novel	2546	3	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.145241191992	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACTGTCTTGTTTTTTGA	2834	False	NA	-5	True	AATAAA	-13	NA	5017675	5010058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_5010959_5011002_5012205_5015676_5016022_5017623
ENSMUSG00000061374.15_5	chr7	-	1495	1	ISM	ENSMUSG00000061374.15	ENSMUST00000167804.9	2637	3	5699	1	4684	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACTGTCTTGTTTTTTGA	8956	False	NA	-5	True	AATAAA	-13	NA	5011553	5010058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_5010100_5011600
ENSMUSG00000061393.15_0	chr9	+	2063	10	FSM	ENSMUSG00000061393.15	ENSMUST00000165044.3	2093	10	14	16	14	-2	multi-exon	TRUE	canonical	3	128	junction_3	24.155872429691	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAGAAAAAAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	119231197	119262565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119231664_119256520_119256729_119257032_119257143_119257266_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
ENSMUSG00000061393.15_1	chr9	+	1962	11	NIC	ENSMUSG00000061393.15	novel	3175	11	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_3	40.556133938037	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	119231204	119262567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_119231664_119256520_119256729_119257032_119257143_119257290_119257419_119257490_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
ENSMUSG00000061393.15_2	chr9	+	1986	11	FSM	ENSMUSG00000061393.15	ENSMUST00000215746.2	3175	11	-305	1494	21	0	multi-exon	FALSE	canonical	3	128	junction_3	23.1622537763491	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	119231204	119262567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119231664_119256520_119256729_119257032_119257143_119257266_119257419_119257490_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
ENSMUSG00000061397.9_0	chr15	-	2112	9	FSM	ENSMUSG00000061397.9	ENSMUST00000023799.8	2097	9	-19	4	-19	-4	multi-exon	FALSE	canonical	0	0	junction_1	0.992156741649222	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGCTGTGTGTGACTCCA	3204	False	NA	NA	False	AATAAA	-16	NA	101848778	101837770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_101838364_101838602_101838638_101839112_101839334_101839859_101839986_101840186_101840352_101844539_101844636_101844735_101844797_101846260_101846479_101848181
ENSMUSG00000061410.7_0	chr8	-	7397	13	FSM	ENSMUSG00000061410.7	ENSMUST00000046386.5	7444	13	20	27	20	-27	multi-exon	FALSE	canonical	3	23	junction_1	7.00545422430901	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATTAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-13	NA	122379620	122325468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_122329071_122330546_122332008_122332088_122332230_122332925_122333057_122333615_122333708_122335128_122335412_122335818_122335874_122335959_122336055_122336855_122336966_122338064_122338137_122345373_122345448_122355304_122355429_122378463
ENSMUSG00000061410.7_11	chr8	-	2642	11	NNC	ENSMUSG00000061410.7	novel	625	6	NA	NA	-2	565	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	10.6470653233649	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAAAAAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	122379642	122332387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_122332815_122332925_122333057_122333615_122333708_122335128_122335412_122335818_122335874_122335959_122336055_122336855_122336966_122338064_122338137_122345373_122345448_122355304_122355429_122378463
ENSMUSG00000061410.7_16	chr8	-	5099	3	ISM	ENSMUSG00000061410.7	ENSMUST00000046386.5	7444	13	47516	27	-871	-27	3prime_fragment	FALSE	canonical	3	23	junction_1	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATTAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-13	NA	122332124	122325468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_122329071_122330546_122332008_122332088
ENSMUSG00000061410.7_2	chr8	-	2268	1	ISM	ENSMUSG00000061410.7	ENSMUST00000046386.5	7444	13	51904	27	3517	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATTAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-13	NA	122327736	122325468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_122325500_122327700
ENSMUSG00000061410.7_4	chr8	-	4235	2	ISM	ENSMUSG00000061410.7	ENSMUST00000046386.5	7444	13	48461	27	74	-27	3prime_fragment	FALSE	canonical	3	23	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATTAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-13	NA	122331179	122325468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_122329071_122330546
ENSMUSG00000061410.7_8	chr8	-	7242	13	NIC	ENSMUSG00000061410.7	novel	7444	13	NA	NA	93	-27	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	11.000946928939	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATTAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-13	NA	122379547	122325468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_122328989_122330546_122332008_122332088_122332230_122332925_122333057_122333615_122333708_122335128_122335412_122335818_122335874_122335959_122336055_122336855_122336966_122338064_122338137_122345373_122345448_122355304_122355429_122378463
ENSMUSG00000061411.13_0	chr2	-	5975	11	NNC	ENSMUSG00000061411.13	novel	6399	11	NA	NA	8888	-9	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_10	25.0856532703456	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAACAAACCTTACACTGA	NA	False	NA	NA	False	AATAAA	-6	NA	153363003	153249394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262451_153262730_153278125_153278268_153312607_153312718_153319790_153319903_153325606_153325763_153362884
ENSMUSG00000061411.13_2	chr2	-	6505	11	NIC	ENSMUSG00000061411.13	novel	6399	11	NA	NA	-137	-9	combination_of_known_junctions	FALSE	canonical	3	30	junction_5	26.7546257682667	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAACAAACCTTACACTGA	NA	False	NA	NA	False	AATAAA	-6	NA	153372028	153249394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262469_153262730_153278125_153278268_153312607_153312718_153319790_153319903_153325606_153325763_153371361
ENSMUSG00000061411.13_3	chr2	-	4470	8	NIC	ENSMUSG00000061411.13	novel	5610	8	NA	NA	-37	-1159	combination_of_known_junctions	FALSE	canonical	3	28	junction_7	31.3205937337838	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTTTCAATCCGTCCGT	NA	False	NA	-10	True	AGTAAA	-16	NA	153286436	153250544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262469_153262730_153278125_153278268_153286276
ENSMUSG00000061411.13_35	chr2	-	176	1	Genic_Genomic	ENSMUSG00000061411.13	novel	NA	NA	NA	NA	-8469	24	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	153295970	153295794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_153295800_153296000
ENSMUSG00000061411.13_6	chr2	-	3117	1	ISM	ENSMUSG00000061411.13	ENSMUST00000035346.14	6399	11	119384	9	33892	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACCTTACACTGAGCTT	NA	False	NA	NA	False	AATAAA	-10	NA	153252507	153249390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_153249400_153252500
ENSMUSG00000061411.13_7	chr2	-	6628	11	FSM	ENSMUSG00000061411.13	ENSMUST00000035346.14	6399	11	-253	24	-253	-20	multi-exon	FALSE	canonical	3	34	junction_10	23.8863978029338	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAACACTGAACAACAAA	NA	False	NA	NA	False	NA	NA	NA	153372144	153249405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262451_153262730_153278125_153278268_153312607_153312718_153319790_153319903_153325606_153325763_153371361
ENSMUSG00000061411.13_9	chr2	-	4561	8	FSM	ENSMUSG00000061411.13	ENSMUST00000109784.2	5610	8	-101	1150	-101	-1150	multi-exon	FALSE	canonical	3	28	junction_7	27.1496232168391	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCGTCCGTGGTCTGATT	NA	False	NA	-1	True	AGTAAA	-25	NA	153286500	153250535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262451_153262730_153278125_153278268_153286276
ENSMUSG00000061414.9_0	chr6	+	3382	19	FSM	ENSMUSG00000061414.9	ENSMUST00000212051.2	7625	19	-7	4250	-7	-4250	multi-exon	TRUE	canonical	0	0	junction_1	0.558326423395605	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAAATACCTCTTTGGAA	NA	False	NA	NA	False	CATAAA	-20	NA	127538293	127646961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_127538385_127554848_127555055_127580792_127581036_127584152_127584265_127585525_127585710_127588348_127588496_127602797_127602889_127606701_127606798_127608762_127608951_127613495_127613568_127616126_127616173_127618169_127618277_127621412_127621747_127626807_127626941_127634606_127634689_127634772_127634888_127642019_127642122_127644548_127644626_127646005
ENSMUSG00000061436.16_1	chr6	-	4627	15	FSM	ENSMUSG00000061436.16	ENSMUST00000162359.8	3867	15	-266	-494	-24	490	multi-exon	FALSE	canonical	2	8	junction_4	5.22601420681153	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTAGTTTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	38853123	38674324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_38675532_38676186_38676351_38680373_38680622_38692874_38693157_38695688_38695869_38698389_38698533_38706855_38706978_38707803_38707931_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164_38796249_38852732
ENSMUSG00000061436.16_10	chr6	-	4598	15	FSM	ENSMUSG00000061436.16	ENSMUST00000160360.2	3907	15	-212	-479	-18	470	multi-exon	FALSE	canonical	0	0	junction_6	6.33785195053803	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTAATTATGTATGTTGC	NA	False	NA	NA	False	GATAAA	-28	NA	38853117	38674344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_38675532_38676186_38676351_38680373_38680622_38692874_38693157_38695688_38695869_38698389_38698530_38706855_38706978_38707803_38707931_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164_38796249_38852732
ENSMUSG00000061436.16_11	chr6	-	5199	12	ISM	ENSMUSG00000061436.16	ENSMUST00000162359.8	3867	15	-283	15882	-41	-15877	5prime_fragment	FALSE	canonical	2	8	junction_1	5.64661823755256	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTGTAATTACCATGAAA	NA	False	NA	NA	False	AGTAAA	-25	NA	38853140	38690700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38693157_38695688_38695869_38698389_38698533_38706855_38706978_38707803_38707931_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164_38796249_38852732
ENSMUSG00000061436.16_12	chr6	-	1814	2	ISM	ENSMUSG00000061436.16	ENSMUST00000160360.2	3907	15	-238	120022	-44	-4	5prime_fragment	FALSE	canonical	3	22	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAAAAGAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	38853143	38794845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38796249_38852732
ENSMUSG00000061436.16_13	chr6	-	1480	1	ISM	ENSMUSG00000061436.16	ENSMUST00000161779.8	7684	15	179555	740	46651	-740	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	38673544	38672064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38672100_38673500
ENSMUSG00000061436.16_3	chr6	-	4719	15	FSM	ENSMUSG00000061436.16	ENSMUST00000161779.8	7684	15	-31	2996	-31	494	multi-exon	FALSE	canonical	2	8	junction_4	5.39131955374677	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTTTTTTCTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	38853130	38674320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_38675532_38676186_38676351_38680373_38680622_38692874_38693157_38695688_38695869_38698389_38698533_38706855_38706978_38707803_38708012_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164_38796249_38852732
ENSMUSG00000061436.16_4	chr6	-	6867	15	NIC	ENSMUSG00000061436.16	novel	7684	15	NA	NA	-44	-858	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	6.44323723934242	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTATCTTTGTGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	38853143	38672182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_38675532_38676186_38676351_38680373_38680622_38692874_38693157_38695688_38695869_38698389_38698530_38706855_38706978_38707803_38708012_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164_38796249_38852732
ENSMUSG00000061436.16_5	chr6	-	3382	14	ISM	ENSMUSG00000061436.16	ENSMUST00000162359.8	3867	15	57626	-657	50	653	3prime_fragment	FALSE	canonical	2	8	junction_4	5.05941035458626	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTGTAATTGCACAAAGT	NA	False	NA	NA	False	AATAGA	-8	NA	38795231	38674161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38675532_38676186_38676351_38680373_38680622_38692874_38693157_38695688_38695869_38698389_38698533_38706855_38706978_38707803_38707931_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164
ENSMUSG00000061436.16_7	chr6	-	2588	1	ISM	ENSMUSG00000061436.16	ENSMUST00000161779.8	7684	15	178329	858	45425	-858	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTATCTTTGTGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	38674770	38672182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38672200_38674800
ENSMUSG00000061436.16_8	chr6	-	3303	14	ISM	ENSMUSG00000061436.16	ENSMUST00000160962.8	3972	15	18823	-472	-55	472	3prime_fragment	FALSE	canonical	0	0	junction_6	6.13747823240575	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATTATGTATGTTGCAG	NA	False	NA	NA	False	GATAAA	-30	NA	38795336	38674342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38675532_38676186_38676351_38680373_38680622_38692874_38693157_38695688_38695869_38698389_38698530_38706855_38706978_38707803_38707931_38714292_38714456_38720010_38720196_38722598_38722686_38724381_38724502_38724808_38724933_38795164
ENSMUSG00000061451.14_2	chr19	-	1161	2	ISM	ENSMUSG00000061451.14	ENSMUST00000151413.2	333	3	12699	-1000	-656	5	3prime_fragment	FALSE	canonical	2	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGACTTTCTCCCTTATC	NA	False	NA	-27	True	AATAAA	-13	NA	5122816	5120881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5121923_5122696
ENSMUSG00000061451.14_4	chr19	-	2589	2	FSM	ENSMUSG00000061451.14	ENSMUST00000077066.8	4006	2	14	1403	14	-1403	multi-exon	FALSE	canonical	2	12	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGGTTTCACACGTGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	5135545	5130760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5133130_5135325
ENSMUSG00000061451.14_5	chr19	-	1982	1	ISM	ENSMUSG00000061451.14	ENSMUST00000077066.8	4006	2	2811	1409	2161	-1409	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGGGAGAGGTTTCACAC	1615	False	NA	NA	False	AATAAA	-7	NA	5132748	5130766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5130800_5132700
ENSMUSG00000061455.14_0	chr4	+	2379	8	FSM	ENSMUSG00000061455.14	ENSMUST00000107720.9	5770	8	0	3391	0	885	multi-exon	FALSE	canonical	3	28	junction_1	8.24621125123532	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGAGTATTTATTTCTTA	5	True	NA	15	True	ATTAAA	-12	NA	48124925	48183116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_48124959_48131764_48131950_48140419_48140486_48158810_48159034_48166927_48167044_48167205_48167257_48180669_48180757_48181498
ENSMUSG00000061455.14_3	chr4	+	2450	8	NIC	ENSMUSG00000061455.14	novel	5770	8	NA	NA	17	874	intron_retention	FALSE	canonical	2	7	junction_1	13.490737563232	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCGGAAAGTATTGAGTA	2	True	NA	4	True	ATTAAA	-1	NA	48124951	48183105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_48125067_48131764_48131950_48140419_48140486_48158810_48159034_48166927_48167044_48167205_48167257_48180669_48180757_48181498
ENSMUSG00000061455.14_6	chr4	+	2483	2	ISM	ENSMUSG00000061455.14	ENSMUST00000064765.6	1531	9	54958	-886	54958	886	3prime_fragment	FALSE	canonical	3	31	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAGTATTTATTTCTTAT	NA	False	NA	16	True	ATTAAA	-13	NA	48179892	48183117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_48180757_48181498
ENSMUSG00000061455.14_7	chr4	+	2272	1	NIC	ENSMUSG00000061455.14	novel	1771	11	NA	NA	57054	-1651	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGTGTATCCATGAAAAAT	NA	False	NA	NA	False	AGTAAA	-17	NA	48181988	48184260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_48182000_48184300
ENSMUSG00000061455.14_8	chr4	+	2053	1	ISM	ENSMUSG00000061455.14	ENSMUST00000107720.9	5770	8	59524	5	59515	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACTGAATTCCTGTTGT	NA	False	NA	NA	False	AATAAA	-20	NA	48184449	48186502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_48184400_48186500
ENSMUSG00000061458.10_0	chr12	+	3013	21	FSM	ENSMUSG00000061458.10	ENSMUST00000046011.12	3021	21	6	2	6	-2	multi-exon	FALSE	canonical	3	221	junction_7	25.2103153490788	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGGCTATTTGTTTAGCT	NA	False	NA	12	True	AATAAA	-15	NA	17398464	17480094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115
ENSMUSG00000061461.12_0	chr5	+	894	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	27	1	-12	-1	multi-exon	FALSE	canonical	3	318	junction_1	5	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGGTGTGTACTGT	3434	False	NA	12	True	ATTAAA	-13	NA	53424506	53435881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_53424701_53434484_53434542_53435238
ENSMUSG00000061461.12_5	chr5	+	2776	2	FSM	ENSMUSG00000061461.12	ENSMUST00000204089.2	212	2	-2051	-513	-2051	-1	multi-exon	FALSE	canonical	3	328	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGGTGTGTACTGT	NA	False	NA	12	True	ATTAAA	-13	NA	53432408	53435881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_53434542_53435238
ENSMUSG00000061469.4_2	chr11	+	4180	6	FSM	ENSMUSG00000061469.4	ENSMUST00000126189.3	1462	6	70	-2788	70	2788	multi-exon	FALSE	canonical	3	10	junction_2	4.24264068711928	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTCGCTTCAAACCTCT	NA	False	NA	NA	False	ATTAAA	-17	NA	51111369	51128668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_51111470_51122618_51122914_51123233_51123435_51124291_51124380_51124877_51125184_51125478
ENSMUSG00000061474.12_0	chr13	-	836	5	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-417	1	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCAGGTGGTCACTTG	NA	False	NA	NA	False	AATAAA	-27	NA	100881584	100872635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
ENSMUSG00000061474.12_1	chr13	-	561	4	FSM	ENSMUSG00000061474.12	ENSMUST00000109333.8	701	4	60	80	-11	42	multi-exon	FALSE	canonical	3	1082	junction_3	81.5693297481079	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCTAGCCTATTAACTT	NA	False	NA	NA	False	ATTAAA	-13	NA	100881107	100872542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037
ENSMUSG00000061474.12_2	chr13	-	844	4	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	49	at_least_one_novel_splicesite	FALSE	canonical	3	219	junction_3	475.847547948804	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTATTAACTTGCTCTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	100881584	100872535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881238
ENSMUSG00000061474.12_3	chr13	-	1025	5	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-417	-10	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_4	463.256408482387	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAATAAATGTCCCTTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	100881584	100872472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881156_100881238
ENSMUSG00000061474.12_9	chr13	-	602	4	FSM	ENSMUSG00000061474.12	ENSMUST00000078573.5	571	4	76	-107	7	-15	multi-exon	FALSE	canonical	3	151	junction_2	492.52884856287	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGTATCTAATAAATGTCC	NA	False	NA	NA	False	ATTAAA	-6	NA	100881089	100872477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100872782_100875521_100875704_100877675_100877740_100881037
ENSMUSG00000061477.5_0	chr12	-	658	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	66	230	-9	0	multi-exon	TRUE	canonical	3	10789	junction_4	2567.89392736971	3722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGTTGTAGTAACTTGT	NA	False	NA	-11	True	AATAAA	-15	NA	28685886	28681082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
ENSMUSG00000061477.5_1	chr12	-	629	6	FSM	ENSMUSG00000061477.5	ENSMUST00000221871.2	820	6	190	1	29	-1	multi-exon	FALSE	canonical	3	10789	junction_4	2615.27425712869	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGTTGTAGTAACTTG	NA	False	NA	-12	True	AATAAA	-14	NA	28685666	28681083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578
ENSMUSG00000061479.16_2	chr7	-	1239	7	FSM	ENSMUSG00000061479.16	ENSMUST00000080356.10	1365	7	126	0	8	0	multi-exon	FALSE	canonical	3	1453	junction_6	315.533102683203	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895570	26886431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895415
ENSMUSG00000061479.16_4	chr7	-	1236	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	100	0	8	0	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895570	26886431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
ENSMUSG00000061479.16_5	chr7	-	1264	6	FSM	ENSMUSG00000061479.16	ENSMUST00000163311.9	1288	6	24	0	24	0	multi-exon	FALSE	canonical	3	2141	junction_5	100.882902416614	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895161	26886431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868
ENSMUSG00000061482.8_0	chr13	+	392	1	FSM	ENSMUSG00000061482.8	ENSMUST00000102968.3	1138	1	-30	776	-30	-776	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCACTACCTTCTCACT	1883	False	NA	-5	True	NA	NA	NA	23765550	23765942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_23765600_23765900
ENSMUSG00000061517.9_0	chr14	-	3438	1	FSM	ENSMUSG00000061517.9	ENSMUST00000170662.2	3799	1	349	12	349	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAGAAAATCCTCTAT	NA	False	NA	NA	False	AATAAA	-13	NA	118474093	118470655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_118470700_118474100
ENSMUSG00000061518.12_0	chr1	+	490	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193210.6	865	4	79	296	-47	0	multi-exon	FALSE	canonical	3	7132	junction_3	70.6588045940962	1061	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTGGCTAGTCTTATGT	NA	False	NA	22	True	AATAAA	-27	NA	36730643	36732466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_36730771_36731291_36731366_36731531_36731632_36732277
ENSMUSG00000061524.9_0	chr14	+	2441	3	FSM	ENSMUSG00000061524.9	ENSMUST00000075888.6	2440	3	-29	28	-29	-28	multi-exon	FALSE	canonical	2	3	junction_1	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGAGGCAACTTGATTG	629	False	NA	NA	False	ATTAAA	-15	NA	122712817	122717236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_122714160_122715951_122716116_122716301
ENSMUSG00000061524.9_1	chr14	+	1115	1	Genic_Genomic	ENSMUSG00000061524.9	novel	NA	NA	NA	NA	1114	476	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACATACTTTTTCCCCC	4437	False	NA	20	True	AATAAA	-16	NA	122716625	122717740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_+_122716600_122717700
ENSMUSG00000061533.17_1	chr12	-	4793	26	FSM	ENSMUSG00000061533.17	ENSMUST00000141429.8	4807	26	7	7	7	-7	multi-exon	FALSE	canonical	3	41	junction_10	9.02405673741029	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGAACATTGAATGATGC	6159	False	NA	-12	True	AATAAA	-12	NA	91351176	90965272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_90966434_90975606_90975710_90986065_90986180_90989173_90989252_91029915_91029940_91050447_91050498_91180338_91180532_91197568_91197629_91200817_91200995_91222348_91222514_91226759_91227411_91233509_91233861_91256262_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133_91331221_91333116_91333279_91336835_91336971_91348421_91348563_91351007
ENSMUSG00000061533.17_12	chr12	-	4140	25	NIC	ENSMUSG00000061533.17	novel	4807	26	NA	NA	11	-5	combination_of_known_splicesites	FALSE	canonical	2	6	junction_10	13.6808234604338	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACATTGAATGATGCGT	6163	False	NA	-10	True	AATAAA	-14	NA	91351172	90965270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_90966434_90975606_90975710_90986065_90986180_90989173_90989252_91029915_91029940_91050447_91050498_91180338_91180532_91197568_91197629_91200817_91200995_91222348_91222514_91233509_91233861_91256262_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133_91331221_91333116_91333279_91336835_91336971_91348421_91348563_91351007
ENSMUSG00000061533.17_19	chr12	-	4536	24	NIC	ENSMUSG00000061533.17	novel	4807	26	NA	NA	17	-5	combination_of_known_splicesites	TRUE	canonical	2	8	junction_21	13.9047529647043	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACATTGAATGATGCGT	6169	False	NA	-10	True	AATAAA	-14	NA	91351166	90965270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_90966434_90975606_90975710_90986065_90986180_90989173_90989252_91029915_91029940_91050447_91050498_91180338_91180532_91197568_91197629_91200817_91200995_91222348_91222514_91226759_91227411_91233509_91233861_91256262_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91336835_91336971_91348421_91348563_91351007
ENSMUSG00000061536.14_11	chr9	-	2655	7	FSM	ENSMUSG00000061536.14	ENSMUST00000111560.10	2669	7	3	11	3	-11	multi-exon	FALSE	canonical	3	5	junction_5	6.55108133567785	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTCAGCCTA	NA	False	NA	NA	False	NA	NA	NA	121534092	121512110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_121513925_121514588_121514655_121517264_121517384_121519301_121519482_121521975_121522140_121524599_121524809_121533989
ENSMUSG00000061536.14_12	chr9	-	2778	8	FSM	ENSMUSG00000061536.14	ENSMUST00000078547.12	5713	8	-42	2977	-22	12	multi-exon	FALSE	canonical	1	1	junction_7	8.73183245139207	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATTGTTTTCCTCCTGA	NA	False	NA	NA	False	ATTAAA	-21	NA	121534067	121512087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_121513925_121514588_121514655_121517264_121517384_121519301_121519482_121521975_121522140_121524599_121524809_121529618_121529744_121533989
ENSMUSG00000061536.14_2	chr9	-	519	1	ISM	ENSMUSG00000061536.14	ENSMUST00000078547.12	5713	8	24394	2	9908	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTGTGTGTTTGTGTGTG	NA	False	NA	-5	True	AATAAA	-16	NA	121509631	121509112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_121509100_121509600
ENSMUSG00000061536.14_3	chr9	-	2513	6	FSM	ENSMUSG00000061536.14	ENSMUST00000139193.2	938	6	-42	-1533	8	16	multi-exon	FALSE	canonical	2	3	junction_4	7.62627038597505	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTTTTCCTCCTGATCCT	NA	False	NA	NA	False	ATTAAA	-25	NA	121534087	121512083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_121513925_121514588_121514655_121517264_121517384_121519301_121519482_121524599_121524809_121533989
ENSMUSG00000061536.14_6	chr9	-	3731	2	NNC	ENSMUSG00000061536.14	novel	2669	7	NA	NA	6642	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAATGTGTGTGTTTGTGT	NA	False	NA	-8	True	AATAAA	-13	NA	121512897	121509115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_121510106_121510156
ENSMUSG00000061544.14_1	chr17	+	4620	6	FSM	ENSMUSG00000061544.14	ENSMUST00000182827.8	640	6	-81	-3899	-81	-8	multi-exon	FALSE	canonical	3	170	junction_1	15.5254629560603	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATCTATCAAGGACTTG	NA	False	NA	3	True	AATAAA	-17	NA	21949694	21967941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21950033_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21964027
ENSMUSG00000061544.14_26	chr17	+	4531	6	FSM	ENSMUSG00000061544.14	ENSMUST00000065871.14	4525	6	-14	8	-3	-8	multi-exon	FALSE	canonical	3	15	junction_1	72.3756865252413	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATCTATCAAGGACTTG	NA	False	NA	3	True	AATAAA	-17	NA	21952690	21967941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21952940_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21964027
ENSMUSG00000061544.14_31	chr17	+	2883	1	ISM	ENSMUSG00000061544.14	ENSMUST00000065871.14	4525	6	12356	6	10168	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTATCAAGGACTTGTA	1468	False	NA	5	True	AATAAA	-19	NA	21965060	21967943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_21965100_21967900
ENSMUSG00000061559.16_0	chr9	-	1253	11	FSM	ENSMUSG00000061559.16	ENSMUST00000121204.8	1290	11	37	0	0	0	multi-exon	FALSE	canonical	3	544	junction_10	185.351584832717	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACCTGCATTTGTGAAC	5458	False	NA	-8	True	AATAAA	-14	NA	54641766	54624447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641652
ENSMUSG00000061559.16_1	chr9	-	1174	11	FSM	ENSMUSG00000061559.16	ENSMUST00000051822.13	1187	11	8	5	-7	0	multi-exon	FALSE	canonical	3	455	junction_10	209.060852385137	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACCTGCATTTGTGAAC	5431	False	NA	-8	True	AATAAA	-14	NA	54641793	54624447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641758
ENSMUSG00000061559.16_2	chr9	-	1247	11	NIC	ENSMUSG00000061559.16	novel	1290	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_9	332.004593341719	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACCTGCATTTGTGAAC	5459	False	NA	-8	True	AATAAA	-14	NA	54641765	54624447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637941_54638670_54638722_54641652
ENSMUSG00000061559.16_3	chr9	-	1169	11	FSM	ENSMUSG00000061559.16	ENSMUST00000130368.8	1162	11	-12	5	-7	0	multi-exon	FALSE	canonical	3	105	junction_9	343.30050975785	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACCTGCATTTGTGAAC	5431	False	NA	-8	True	AATAAA	-14	NA	54641793	54624447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637941_54638670_54638722_54641758
ENSMUSG00000061576.16_0	chr5	+	3505	26	FSM	ENSMUSG00000061576.16	ENSMUST00000101471.4	4491	26	-33	1019	-33	21	multi-exon	FALSE	canonical	2	5	junction_22	2.910395162173	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCTGCTGTCTCTGTTA	NA	False	NA	NA	False	GATAAA	-13	NA	27466939	27931479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_27467360_27587752_27587868_27603911_27604011_27656185_27656281_27674408_27674484_27742979_27743033_27762549_27762632_27803799_27803921_27836376_27836532_27839506_27839605_27857174_27857299_27858697_27858737_27866584_27866693_27868427_27868520_27869710_27869759_27871407_27871527_27901847_27901896_27914447_27914547_27917605_27917676_27919369_27919565_27923451_27923507_27926042_27926155_27927670_27927730_27928369_27928443_27928538_27928613_27930602
ENSMUSG00000061576.16_1	chr5	+	2350	12	ISM	ENSMUSG00000061576.16	ENSMUST00000101471.4	4491	26	-56	72911	-56	-42436	5prime_fragment	TRUE	canonical	2	6	junction_2	2.97926720148617	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTGATACAGTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	27466916	27859587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_27467360_27587752_27587868_27603911_27604011_27656185_27656281_27674408_27674484_27742979_27743033_27762549_27762632_27803799_27803921_27836376_27836532_27839506_27839605_27857174_27857299_27858697
ENSMUSG00000061576.16_3	chr5	+	2034	17	ISM	ENSMUSG00000061576.16	ENSMUST00000101471.4	4491	26	-35	30462	-35	13	5prime_fragment	TRUE	canonical	2	6	junction_2	2.78107443266087	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGAAGCTCTGGCTCCCT	NA	False	NA	NA	False	AATAAA	-26	NA	27466937	27902036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_27467360_27587752_27587868_27603911_27604011_27656185_27656281_27674408_27674484_27742979_27743033_27762549_27762632_27803799_27803921_27836376_27836532_27839506_27839605_27857174_27857299_27858697_27858737_27866584_27866693_27868427_27868520_27869710_27869759_27871407_27871527_27901847
ENSMUSG00000061589.15_0	chr10	+	6792	28	FSM	ENSMUSG00000061589.15	ENSMUST00000105336.9	6808	28	13	3	11	-3	multi-exon	FALSE	canonical	3	61	junction_7	16.1546877685662	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCAGTTCTCAGTGCCA	1668	False	NA	13	True	AATAAA	-17	NA	80591052	80631292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80591359_80600435_80600480_80601996_80602072_80604438_80604503_80606971_80607201_80608937_80609033_80609539_80609603_80613389_80613446_80614096_80614177_80616676_80616746_80617201_80617309_80617976_80618019_80619017_80619126_80619257_80619490_80619706_80619821_80620398_80620491_80620575_80620678_80620883_80621022_80621331_80621458_80621615_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444_80627396_80629340
ENSMUSG00000061589.15_41	chr10	+	4431	9	ISM	ENSMUSG00000061589.15	ENSMUST00000105336.9	6808	28	30797	1	839	-1	3prime_fragment	FALSE	canonical	3	80	junction_3	13.9798962800158	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGTTCTCAGTGCCAGT	6423	False	NA	15	True	AATAAA	-19	NA	80621836	80631294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444_80627396_80629340
ENSMUSG00000061589.15_52	chr10	+	3486	5	ISM	ENSMUSG00000061589.15	ENSMUST00000105336.9	6808	28	33577	1	-280	-1	3prime_fragment	FALSE	canonical	3	86	junction_4	14.0066948278314	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGTTCTCAGTGCCAGT	1899	False	NA	15	True	AATAAA	-19	NA	80624616	80631294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80624927_80625147_80625354_80626153_80626219_80626444_80627396_80629340
ENSMUSG00000061589.15_55	chr10	+	2406	1	NIC	ENSMUSG00000061589.15	novel	6808	28	NA	NA	1600	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGTTCTCAGTGCCAG	6170	False	NA	14	True	AATAAA	-18	NA	80628887	80631293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80628900_80631300
ENSMUSG00000061589.15_56	chr10	+	2418	2	ISM	ENSMUSG00000061589.15	ENSMUST00000105336.9	6808	28	35889	4	-359	-4	3prime_fragment	FALSE	canonical	3	86	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCAGTTCTCAGTGCC	4211	False	NA	12	True	AATAAA	-16	NA	80626928	80631291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80627396_80629340
ENSMUSG00000061589.15_57	chr10	+	3194	3	NIC	ENSMUSG00000061589.15	novel	2820	7	NA	NA	-501	-1	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	2	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGTTCTCAGTGCCAGT	4069	False	NA	15	True	AATAAA	-19	NA	80626786	80631294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80627396_80627976_80628608_80629340
ENSMUSG00000061589.15_8	chr10	+	6294	29	NIC	ENSMUSG00000061589.15	novel	6808	28	NA	NA	16	-13	combination_of_known_junctions	FALSE	canonical	3	39	junction_27	19.5948764648688	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACTTGACTGCATTTAT	1673	False	NA	NA	False	TATAAA	-5	NA	80591057	80630168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80591359_80600435_80600480_80601996_80602072_80604438_80604503_80606971_80607201_80608937_80609033_80609539_80609603_80613389_80613446_80614096_80614177_80616676_80616746_80617201_80617309_80617976_80618019_80619017_80619126_80619257_80619490_80619706_80619821_80620398_80620491_80620575_80620678_80620883_80621022_80621331_80621458_80621615_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444_80627396_80627976_80628608_80629340
ENSMUSG00000061607.16_0	chr17	+	7197	16	NIC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-28	-2	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	32.7234879966465	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTCCTGCAGTGAAT	9362	False	NA	13	True	NA	NA	NA	36152539	36170560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_36152572_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354
ENSMUSG00000061607.16_101	chr17	+	3504	7	ISM	ENSMUSG00000061607.16	ENSMUST00000082337.13	7335	16	11709	1	4723	-1	3prime_fragment	FALSE	canonical	3	142	junction_2	14.742229591664	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTCCTGCAGTGAATT	NA	False	NA	14	True	NA	NA	NA	36164115	36170561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354
ENSMUSG00000061607.16_116	chr17	+	1709	1	ISM	ENSMUSG00000061607.16	ENSMUST00000082337.13	7335	16	16445	2	9459	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTCCTGCAGTGAAT	1231	False	NA	13	True	NA	NA	NA	36168851	36170560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_36168900_36170600
ENSMUSG00000061607.16_2	chr17	+	7204	16	FSM	ENSMUSG00000061607.16	ENSMUST00000082337.13	7335	16	130	1	-31	-1	multi-exon	TRUE	canonical	3	53	junction_5	38.1950549446158	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTCCTGCAGTGAATT	9359	False	NA	14	True	NA	NA	NA	36152536	36170561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36152572_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159680_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354
ENSMUSG00000061607.16_23	chr17	+	7254	16	NIC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	38.3054391264043	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTCCTGCAGTGAAT	9391	False	NA	13	True	NA	NA	NA	36152568	36170560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_36152658_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354
ENSMUSG00000061607.16_74	chr17	+	5918	12	NIC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-527	-2	combination_of_known_junctions	FALSE	canonical	3	99	junction_1	28.6486265229748	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTCCTGCAGTGAAT	NA	False	NA	13	True	NA	NA	NA	36158865	36170560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354
ENSMUSG00000061607.16_90	chr17	+	4644	9	ISM	ENSMUSG00000061607.16	ENSMUST00000082337.13	7335	16	9204	1	2218	-1	3prime_fragment	FALSE	canonical	3	116	junction_1	24.2474225434375	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTCCTGCAGTGAATT	NA	False	NA	14	True	NA	NA	NA	36161610	36170561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354
ENSMUSG00000061613.14_0	chr17	-	887	8	FSM	ENSMUSG00000061613.14	ENSMUST00000014684.6	1046	8	155	4	1	-3	multi-exon	FALSE	canonical	3	4626	junction_6	706.208473585007	1825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTGGTGTGACTTCTTG	NA	False	NA	-21	True	AATAAA	-15	NA	31877711	31866058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ENSMUSG00000061613.14_19	chr17	-	951	9	FSM	ENSMUSG00000061613.14	ENSMUST00000237323.2	975	9	21	3	4	-3	multi-exon	FALSE	canonical	3	177	junction_6	2395.95355495469	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTGGTGTGACTTCTTG	NA	False	NA	-21	True	AATAAA	-15	NA	31877708	31866058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31871475_31871543_31873952_31874041_31877626
ENSMUSG00000061613.14_2	chr17	-	885	8	FSM	ENSMUSG00000061613.14	ENSMUST00000166526.9	923	8	34	4	3	-3	multi-exon	FALSE	canonical	3	1007	junction_5	2353.82216310201	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTGGTGTGACTTCTTG	NA	False	NA	-21	True	AATAAA	-15	NA	31877709	31866058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31871475_31871543_31873952_31874041_31877626
ENSMUSG00000061613.14_8	chr17	-	4154	7	NIC	ENSMUSG00000061613.14	novel	975	9	NA	NA	1	-5	intron_retention	FALSE	canonical	3	5175	junction_5	505.802223096033	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTATTGGTGTGACTTCT	NA	False	NA	-23	True	AATAAA	-13	NA	31877714	31866060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31874041_31877626
ENSMUSG00000061633.4_0	chr15	+	1022	1	FSM	ENSMUSG00000061633.4	ENSMUST00000074608.4	1024	1	2	0	2	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGAGTGCATTCTTAAA	6328	False	NA	9	True	AATAAA	-17	NA	81864742	81865764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81864700_81865800
ENSMUSG00000061650.7_0	chr11	+	1878	2	FSM	ENSMUSG00000061650.7	ENSMUST00000081980.7	1920	2	38	4	38	-4	multi-exon	FALSE	canonical	3	425	junction_1	0	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACACATGGTTTGCCTGT	NA	False	NA	6	True	ATTAAA	-17	NA	59839069	59853027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59839305_59851384
ENSMUSG00000061650.7_1	chr11	+	1286	1	ISM	ENSMUSG00000061650.7	ENSMUST00000081980.7	1920	2	12709	5	12709	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGACACATGGTTTGCCTG	3438	False	NA	5	True	ATTAAA	-16	NA	59851740	59853026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_59851700_59853000
ENSMUSG00000061665.8_0	chr17	-	5364	18	FSM	ENSMUSG00000061665.8	ENSMUST00000024709.9	5364	18	-245	245	31	-244	multi-exon	FALSE	canonical	3	147	junction_3	39.8587471351445	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTGCTATTAATATTTT	NA	False	NA	-12	True	AATAAA	-42	NA	43187525	43104086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_43107261_43109485_43109550_43116050_43116227_43118804_43118907_43119621_43119735_43126835_43126979_43127317_43127484_43131485_43131549_43133239_43133277_43135364_43135470_43136727_43136823_43137171_43137251_43140808_43140997_43145055_43145177_43149592_43149694_43156216_43156371_43163258_43163420_43187203
ENSMUSG00000061665.8_1	chr17	-	5335	18	NNC	ENSMUSG00000061665.8	novel	5364	18	NA	NA	25	-243	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_11	66.4230959957521	75	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGCTATTAATATTTTT	NA	False	NA	-11	True	AATAAA	-43	NA	43187531	43104085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_43107261_43109485_43109550_43116050_43116227_43118804_43118907_43119621_43119735_43126835_43126979_43127317_43127484_43131485_43131549_43133239_43133277_43135364_43135470_43136727_43136787_43137171_43137251_43140808_43140997_43145055_43145177_43149592_43149694_43156216_43156371_43163258_43163420_43187203
ENSMUSG00000061665.8_2	chr17	-	2160	1	ISM	ENSMUSG00000061665.8	ENSMUST00000024709.9	5364	18	81037	242	4536	-241	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTATTAATATTTTTAG	6955	False	NA	-9	True	AATAAA	-45	NA	43106243	43104083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_43104100_43106200
ENSMUSG00000061666.7_0	chr11	-	2339	10	FSM	ENSMUSG00000061666.7	ENSMUST00000020804.8	2336	10	-28	25	-28	-25	multi-exon	FALSE	canonical	3	37	junction_6	8.73053390247253	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACGAGGTATTGATTTTC	NA	False	NA	-33	True	AATAAA	-14	NA	86964916	86924717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86926122_86926417_86926470_86928656_86928717_86932613_86932748_86935952_86936043_86936581_86936701_86947617_86947664_86950250_86950387_86954724_86954768_86964661
ENSMUSG00000061666.7_1	chr11	-	2105	9	ISM	ENSMUSG00000061666.7	ENSMUST00000020804.8	2336	10	10124	1	10124	-1	3prime_fragment	FALSE	canonical	3	37	junction_6	8.02242949486002	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTGTGATTCCAGTGTG	NA	False	NA	-9	True	AATAAA	-38	NA	86954764	86924693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_86926122_86926417_86926470_86928656_86928717_86932613_86932748_86935952_86936043_86936581_86936701_86947617_86947664_86950250_86950387_86954724
ENSMUSG00000061666.7_6	chr11	-	1864	6	ISM	ENSMUSG00000061666.7	ENSMUST00000020804.8	2336	10	28203	5	28203	-5	3prime_fragment	FALSE	canonical	3	42	junction_3	6.7646138101151	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGCTTGTGATTCCAG	NA	False	NA	-13	True	AATAAA	-34	NA	86936685	86924697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_86926122_86926417_86926470_86928656_86928717_86932613_86932748_86935952_86936043_86936581
ENSMUSG00000061669.7_0	chr13	+	100	1	FSM	ENSMUSG00000061669.7	ENSMUST00000081679.7	354	1	295	-41	295	41	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAAAGAA	NA	False	NA	NA	False	AATAAA	-17	NA	116290611	116290711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_116290600_116290700
ENSMUSG00000061689.16_1	chr2	+	3496	13	FSM	ENSMUSG00000061689.16	ENSMUST00000169464.9	4851	13	-50	1405	-50	3	multi-exon	FALSE	canonical	2	10	junction_1	158.364996833967	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCGTTTCTCACCCTTC	NA	False	NA	14	True	ATTAAA	-17	NA	156455574	156604878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156455779_156506718_156506904_156542525_156543595_156546329_156546575_156547775_156547891_156548997_156549049_156552940_156553182_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ENSMUSG00000061689.16_14	chr2	+	1428	7	FSM	ENSMUSG00000061689.16	ENSMUST00000109566.9	1595	7	1	166	0	3	multi-exon	FALSE	canonical	3	183	junction_1	73.2575365861197	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCGTTTCTCACCCTTC	NA	False	NA	14	True	ATTAAA	-17	NA	156562965	156604878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156563008_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ENSMUSG00000061689.16_25	chr2	+	2410	7	FSM	ENSMUSG00000061689.16	ENSMUST00000099145.6	3402	7	-414	1406	8	2	multi-exon	FALSE	canonical	3	22	junction_1	125.628309796089	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAGCGTTTCTCACCCTT	NA	False	NA	13	True	ATTAAA	-16	NA	156562997	156604877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156564023_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ENSMUSG00000061689.16_29	chr2	+	1475	7	NNC	ENSMUSG00000061689.16	novel	4840	13	NA	NA	9476	2	intron_retention	FALSE	canonical	3	40	junction_1	119.417219119448	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAGCGTTTCTCACCCTT	NA	False	NA	13	True	ATTAAA	-16	NA	156572887	156604877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_156572978_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ENSMUSG00000061689.16_34	chr2	+	1387	6	ISM	ENSMUSG00000061689.16	ENSMUST00000109566.9	1595	7	24789	166	-14111	3	3prime_fragment	FALSE	canonical	3	261	junction_2	50.6856981800586	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCGTTTCTCACCCTTC	NA	False	NA	14	True	ATTAAA	-17	NA	156587753	156604878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ENSMUSG00000061718.13_0	chr11	+	1686	7	FSM	ENSMUSG00000061718.13	ENSMUST00000078694.13	2001	7	314	1	314	1	multi-exon	FALSE	canonical	1	3	junction_1	2.21108319357027	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGAGACTCCTCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	98239543	98248621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98240001_98241394_98241456_98241710_98241734_98242091_98242168_98246152_98246336_98247650_98247774_98247858
ENSMUSG00000061731.10_2	chr15	-	3462	11	FSM	ENSMUSG00000061731.10	ENSMUST00000077273.9	7663	11	-30	4231	-30	395	multi-exon	TRUE	canonical	3	89	junction_10	11.8574870862253	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAAAATTGTGTTGGTTG	NA	False	NA	-4	True	ATTAAA	-19	NA	53209585	52931664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_52932246_52936688_52936861_52939164_52939326_52946480_52946571_52951450_52951547_52953326_52953446_52955678_52955812_52965080_52965201_52969422_52969531_52970873_52970968_53207797
ENSMUSG00000061751.17_1	chr16	-	3222	10	NNC	ENSMUSG00000061751.17	novel	10438	27	NA	NA	-17074	1173	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.05409255338946	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGGGTTTCATGTCATC	2769	False	NA	NA	False	AATATA	-19	NA	33816170	33794359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_33796450_33797895_33798035_33803057_33803259_33805544_33805624_33807455_33807621_33809139_33809272_33810137_33810260_33813228_33813401_33814005_33814034_33816076
ENSMUSG00000061751.17_10	chr16	-	2680	16	FSM	ENSMUSG00000061751.17	ENSMUST00000114964.8	2693	16	13	0	13	0	multi-exon	FALSE	canonical	3	14	junction_2	6.46701030014815	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGTTTTAATGAGGTCA	NA	False	NA	-10	True	AATAAA	-12	NA	33916385	33833515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_33834052_33834327_33834585_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874035_33875201_33875486_33916165
ENSMUSG00000061751.17_11	chr16	-	2679	16	FSM	ENSMUSG00000061751.17	ENSMUST00000232157.2	2690	16	13	-2	13	2	multi-exon	FALSE	canonical	3	12	junction_2	6.74157910944379	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTTTTAATGAGGTCAAA	NA	False	NA	-8	True	AATAAA	-14	NA	33916385	33833513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_33834052_33834327_33834582_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874035_33875201_33875486_33916165
ENSMUSG00000061751.17_18	chr16	-	3036	19	NIC	ENSMUSG00000061751.17	novel	7636	49	NA	NA	-12537	1	combination_of_known_junctions	FALSE	canonical	1	7	junction_16	9.06236962443469	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGTTTTAATGAGGTCAA	NA	False	NA	-9	True	AATAAA	-13	NA	33996186	33833514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_33834052_33834327_33834582_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874035_33875201_33875486_33936591_33936836_33991641_33991745_33994754_33994898_33996098
ENSMUSG00000061751.17_7	chr16	-	3042	19	NNC	ENSMUSG00000061751.17	novel	7636	49	NA	NA	-12539	-1	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_16	9.12752586383965	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATGAGGTCAAAGGTTAG	NA	False	NA	-2	True	AATAAA	-20	NA	33996188	33833507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_33834052_33834327_33834582_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874032_33875201_33875486_33936591_33936836_33991641_33991745_33994754_33994898_33996098
ENSMUSG00000061751.17_9	chr16	-	2685	16	NNC	ENSMUSG00000061751.17	novel	2690	16	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	6.90700127889569	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGTTTTAATGAGGTCA	NA	False	NA	-10	True	AATAAA	-12	NA	33916396	33833515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_33834052_33834327_33834582_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874032_33875201_33875486_33916165
ENSMUSG00000061755.11_1	chr5	-	5004	17	ISM	ENSMUSG00000061755.11	ENSMUST00000202908.2	10399	26	25417	177	5144	-177	3prime_fragment	FALSE	canonical	3	71	junction_16	13.9239003156443	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATGTGTAGGTTTTTTTA	NA	False	NA	-18	True	ATTAAA	-11	NA	41976241	41945057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_41946293_41951569_41951724_41952224_41952307_41952412_41952463_41955380_41955427_41957114_41957150_41957232_41957309_41958102_41958180_41958504_41958584_41962494_41962575_41964031_41964105_41964514_41964586_41966046_41966108_41967397_41967442_41970464_41970550_41971473_41971539_41973550
ENSMUSG00000061755.11_15	chr5	-	4806	17	NNC	ENSMUSG00000061755.11	novel	10399	26	NA	NA	5351	-177	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_16	22.1440595871669	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATGTGTAGGTTTTTTTA	NA	False	NA	-18	True	ATTAAA	-11	NA	41976034	41945057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_41946293_41951569_41951724_41952224_41952307_41952412_41952463_41955380_41955427_41957114_41957150_41957232_41957309_41958102_41958180_41958504_41958584_41962494_41962575_41964031_41964105_41964514_41964586_41966046_41966108_41967397_41967442_41970464_41970550_41971473_41971548_41973550
ENSMUSG00000061755.11_2	chr5	-	10190	26	FSM	ENSMUSG00000061755.11	ENSMUST00000202908.2	10399	26	35	174	12	-174	multi-exon	FALSE	canonical	3	41	junction_22	25.3587381389532	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTAGGTTTTTTTATTG	NA	False	NA	-15	True	ATTAAA	-14	NA	42001623	41945054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_41946293_41951569_41951724_41952224_41952307_41952412_41952463_41955380_41955427_41957114_41957150_41957232_41957309_41958102_41958180_41958504_41958584_41962494_41962575_41964031_41964105_41964514_41964586_41966046_41966108_41967397_41967442_41970464_41970550_41971473_41971539_41973550_41979504_41981311_41981385_41983805_41983945_41984451_41984564_41986095_41986263_41988787_41988938_41989553_41990169_41991000_41991192_41995382_41995508_42001274
ENSMUSG00000061755.11_31	chr5	-	3651	8	ISM	ENSMUSG00000061755.11	ENSMUST00000202200.2	3387	9	7	2150	7	-2150	5prime_fragment	FALSE	canonical	3	41	junction_4	6.46813224152673	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTGTTTGTTTTTATT	NA	False	NA	NA	False	ATTAAA	-16	NA	42001628	41982007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_41983945_41984451_41984564_41986095_41986263_41988787_41988938_41989553_41990169_41991000_41991192_41995382_41995508_42001274
ENSMUSG00000061755.11_4	chr5	-	5443	18	ISM	ENSMUSG00000061755.11	ENSMUST00000050556.11	10540	27	25120	176	4847	-176	3prime_fragment	FALSE	canonical	3	23	junction_1	26.3728916079505	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTAGGTTTTTTTAT	NA	False	NA	-17	True	ATTAAA	-12	NA	41976538	41945056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_41946293_41949139_41949281_41951569_41951724_41952224_41952307_41952412_41952463_41955380_41955427_41957114_41957150_41957232_41957309_41958102_41958180_41958504_41958584_41962494_41962575_41964031_41964105_41964514_41964586_41966046_41966108_41967397_41967442_41970464_41970550_41971473_41971539_41973550
ENSMUSG00000061755.11_6	chr5	-	10335	27	FSM	ENSMUSG00000061755.11	ENSMUST00000050556.11	10540	27	30	175	7	-175	multi-exon	FALSE	canonical	3	23	junction_1	28.7549584095699	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTAGGTTTTTTTATT	NA	False	NA	-16	True	ATTAAA	-13	NA	42001628	41945055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_41946293_41949139_41949281_41951569_41951724_41952224_41952307_41952412_41952463_41955380_41955427_41957114_41957150_41957232_41957309_41958102_41958180_41958504_41958584_41962494_41962575_41964031_41964105_41964514_41964586_41966046_41966108_41967397_41967442_41970464_41970550_41971473_41971539_41973550_41979504_41981311_41981385_41983805_41983945_41984451_41984564_41986095_41986263_41988787_41988938_41989553_41990169_41991000_41991192_41995382_41995508_42001274
ENSMUSG00000061758.14_0	chr6	+	1319	10	FSM	ENSMUSG00000061758.14	ENSMUST00000038383.14	1371	10	49	3	-14	0	multi-exon	TRUE	canonical	3	14	junction_8	4.10960933531265	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACATTTTCAACTGTCAG	3055	False	NA	1	True	AATAAA	-15	NA	34361201	34373882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_34361343_34364606_34364775_34365710_34365828_34366989_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
ENSMUSG00000061759.16_2	chr10	+	2271	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	150	8	-3	-7	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGAGCTCTCACTGGTT	NA	False	NA	1	True	AATAAA	-43	NA	4382616	4405133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
ENSMUSG00000061759.16_23	chr10	+	1515	1	ISM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	21152	8	19038	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGAGCTCTCACTGGTT	NA	False	NA	1	True	AATAAA	-43	NA	4403618	4405133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_4403600_4405100
ENSMUSG00000061778.11_0	chrX	-	1710	1	NIC	ENSMUSG00000061778.11	novel	2487	15	NA	NA	42411	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAAATCTTTTGTCTCT	NA	False	NA	NA	False	AATAAA	-10	NA	163720882	163719172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_163719200_163720900
ENSMUSG00000061778.11_10	chrX	-	3023	6	ISM	ENSMUSG00000061778.11	ENSMUST00000004715.2	2015	15	33012	-2030	32974	-10	3prime_fragment	FALSE	canonical	3	54	junction_5	9.56242647030554	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAAAAAATCTTTTGTCT	NA	False	NA	NA	False	AATAAA	-8	NA	163730319	163719174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_163721689_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237
ENSMUSG00000061778.11_3	chrX	-	4021	15	FSM	ENSMUSG00000061778.11	ENSMUST00000004715.2	2015	15	24	-2030	11	-10	multi-exon	FALSE	canonical	3	42	junction_12	10.321366781822	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAAAAAATCTTTTGTCT	NA	False	NA	NA	False	AATAAA	-8	NA	163763307	163719174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_163721689_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
ENSMUSG00000061778.11_4	chrX	-	2416	15	FSM	ENSMUSG00000061778.11	ENSMUST00000112248.9	2487	15	64	7	11	-7	multi-exon	FALSE	canonical	1	2	junction_1	17.7207649441011	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATCTTTTGTCTCTA	NA	False	NA	NA	False	AATAAA	-11	NA	163763307	163719171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_163720081_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
ENSMUSG00000061778.11_7	chrX	-	2639	15	FSM	ENSMUSG00000061778.11	ENSMUST00000112247.9	2479	15	-20	-140	5	-9	multi-exon	FALSE	canonical	1	3	junction_1	17.508598470699	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAAAATCTTTTGTCTC	NA	False	NA	NA	False	AATAAA	-9	NA	163763313	163719173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_163720300_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
ENSMUSG00000061787.16_1	chr7	-	460	5	FSM	ENSMUSG00000061787.16	ENSMUST00000080813.5	494	5	27	7	0	0	multi-exon	FALSE	canonical	3	8882	junction_4	1855.19963548401	1943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAAGTTTGTCTGTATT	NA	False	NA	-17	True	AATAAA	-5	NA	80994975	80992487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_2	chr7	-	435	4	FSM	ENSMUSG00000061787.16	ENSMUST00000134425.8	660	4	225	0	215	0	multi-exon	FALSE	canonical	3	12924	junction_1	185.347121789241	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAAGTTTGTCTGTATT	NA	False	NA	-17	True	AATAAA	-5	NA	80994757	80992487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604
ENSMUSG00000061833.7_0	chr13	+	320	1	FSM	ENSMUSG00000061833.7	ENSMUST00000073790.7	878	1	601	-43	601	43	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAGTAA	2976	False	NA	NA	False	AATAAA	-17	NA	76102855	76103175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_76102900_76103200
ENSMUSG00000061838.8_0	chr6	-	2226	11	FSM	ENSMUSG00000061838.8	ENSMUST00000204224.3	3367	11	2	1139	2	-6	multi-exon	FALSE	canonical	3	467	junction_5	91.8564096838103	1130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTAGCCTCACAGTTCTT	NA	False	NA	-13	True	AATAAA	-16	NA	95695779	95451128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
ENSMUSG00000061848.6_0	chr15	+	123	1	FSM	ENSMUSG00000061848.6	ENSMUST00000072779.6	456	1	380	-47	380	47	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAAAATAAAAAAT	6654	False	NA	NA	False	AATAAA	-17	NA	81856970	81857093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_81857000_81857100
ENSMUSG00000061859.18_1	chr4	+	3304	20	ISM	ENSMUSG00000061859.18	ENSMUST00000238306.2	7416	45	64	221972	0	-2	5prime_fragment	FALSE	canonical	2	11	junction_1	4.26088308379139	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTTCTTTTAAATTCC	NA	False	NA	NA	False	AATAAA	-18	NA	98284091	98385868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_98284162_98293615_98293672_98293771_98293939_98297391_98297587_98299263_98299404_98301240_98301437_98304867_98304997_98312512_98312732_98314249_98314350_98317171_98317264_98319994_98320137_98325566_98325708_98329290_98329380_98331987_98332045_98344366_98344502_98353270_98353433_98357709_98357842_98379774_98379985_98383261_98383376_98385110
ENSMUSG00000061859.18_2	chr4	+	6091	44	FSM	ENSMUSG00000061859.18	ENSMUST00000041284.10	7340	44	1	1248	1	-3	multi-exon	FALSE	canonical	1	2	junction_32	5.98203548240142	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAACTTCCTCGCAATGA	NA	False	NA	NA	False	AATAAA	-21	NA	98284028	98606592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_98284162_98293615_98293672_98293771_98293939_98297391_98297587_98299263_98299404_98301240_98301437_98304867_98304997_98312512_98312732_98314249_98314350_98317171_98317264_98319994_98320137_98325566_98325708_98329290_98329380_98331987_98332045_98344366_98344502_98353270_98353433_98357709_98357842_98379774_98379985_98383261_98383376_98385110_98385519_98393918_98394043_98401835_98402011_98407167_98407240_98408979_98409158_98411627_98411739_98423746_98423825_98427195_98427296_98457175_98457373_98480169_98480262_98499304_98499378_98511839_98511927_98526927_98527000_98538604_98538723_98540640_98540796_98555812_98555897_98562430_98562625_98564409_98564558_98565477_98565565_98569350_98569460_98570280_98570319_98575569_98575693_98576362_98576468_98592231_98592339_98606145
ENSMUSG00000061878.17_1	chr11	+	1725	6	FSM	ENSMUSG00000061878.17	ENSMUST00000154034.8	1050	6	-3	-672	-3	-1	multi-exon	FALSE	canonical	0	0	junction_4	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGCTGATCCTATCCT	NA	False	NA	NA	False	AATAAA	-11	NA	116424090	116427493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116424195_116424795_116425000_116425677_116425828_116425905_116426001_116426077_116426194_116426437
ENSMUSG00000061878.17_2	chr11	+	1728	6	FSM	ENSMUSG00000061878.17	ENSMUST00000063446.13	2527	6	792	7	-3	-1	multi-exon	FALSE	canonical	0	0	junction_4	1.49666295470958	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGCTGATCCTATCCT	NA	False	NA	NA	False	AATAAA	-11	NA	116424090	116427493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116424195_116424795_116425000_116425674_116425828_116425905_116426001_116426077_116426194_116426437
ENSMUSG00000061882.13_0	chr5	+	173	1	FSM	ENSMUSG00000061882.13	ENSMUST00000197673.2	4470	1	648	3649	648	-3649	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124101338	124101511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124101300_124101500
ENSMUSG00000061887.15_0	chr4	+	2172	18	FSM	ENSMUSG00000061887.15	ENSMUST00000030367.15	3195	18	21	1002	-20	0	multi-exon	TRUE	canonical	3	121	junction_13	39.9235428457496	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGCTGGTTTATTTCA	NA	False	NA	12	True	AATAAA	-12	NA	106768687	106905889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106884413_106884495_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
ENSMUSG00000061887.15_11	chr4	+	2016	8	ISM	ENSMUSG00000061887.15	ENSMUST00000124936.8	1719	14	81744	-927	-599	-75	3prime_fragment	FALSE	canonical	3	121	junction_3	9.43289943955382	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATTATGATACATTGTAG	NA	False	NA	2	True	NA	NA	NA	106894799	106906816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
ENSMUSG00000061887.15_12	chr4	+	1145	1	ISM	ENSMUSG00000061887.15	ENSMUST00000030367.15	3195	18	136934	146	1450	-146	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATTGTAGCTGTTTCTG	NA	False	NA	1	True	AAAAAG	-20	NA	106905600	106906745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_106905600_106906700
ENSMUSG00000061887.15_2	chr4	+	2093	17	FSM	ENSMUSG00000061887.15	ENSMUST00000072753.13	1924	17	-42	-127	-20	2	multi-exon	FALSE	canonical	3	47	junction_5	51.1955503437555	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGCTGGTTTATTTCAAA	NA	False	NA	14	True	AATAAA	-14	NA	106768687	106905891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
ENSMUSG00000061894.16_0	chr4	-	4232	3	ISM	ENSMUSG00000061894.16	ENSMUST00000084276.12	3962	4	7	7	7	1	intron_retention	FALSE	canonical	3	8	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGAACATTTTGTATTTC	NA	False	NA	-5	True	NA	NA	NA	128483748	128477338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_128480638_128481808_128482238_128483244
ENSMUSG00000061894.16_1	chr4	-	5291	8	FSM	ENSMUSG00000061894.16	ENSMUST00000097877.9	5364	8	67	6	3	-6	multi-exon	FALSE	canonical	3	8	junction_1	4.69041575982343	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTCCAAACTGAACATTTT	NA	False	NA	-12	True	NA	NA	NA	128503824	128477345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_128480638_128481808_128482238_128483244_128483935_128485265_128485351_128485608_128485686_128486127_128486300_128497997_128498506_128503786
ENSMUSG00000061894.16_10	chr4	-	2227	1	ISM	ENSMUSG00000061894.16	ENSMUST00000084276.12	3962	4	4189	8	4189	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACATTTTGTATTT	NA	False	NA	-6	True	NA	NA	NA	128479566	128477339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_128477300_128479600
ENSMUSG00000061894.16_13	chr4	-	1004	1	ISM	ENSMUSG00000061894.16	ENSMUST00000084276.12	3962	4	5412	8	5412	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACATTTTGTATTT	NA	False	NA	-6	True	NA	NA	NA	128478343	128477339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_128477300_128478300
ENSMUSG00000061894.16_15	chr4	-	3292	2	FSM	ENSMUSG00000061894.16	ENSMUST00000151226.2	3323	2	24	7	-15	-7	multi-exon	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128503803	128495230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_128498506_128503786
ENSMUSG00000061894.16_6	chr4	-	3357	2	ISM	ENSMUSG00000061894.16	ENSMUST00000084276.12	3962	4	1882	14	1882	-6	3prime_fragment	FALSE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTCCAAACTGAACATTTT	NA	False	NA	-12	True	NA	NA	NA	128481873	128477345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_128480638_128481808
ENSMUSG00000061894.16_7	chr4	-	3468	8	NNC	ENSMUSG00000061894.16	novel	5364	8	NA	NA	0	-1	intron_retention	FALSE	canonical	2	4	junction_2	6.72794962246664	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGATGTCTTTACAAATGCT	NA	False	NA	NA	False	AATACA	-15	NA	128503827	128479168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_128480638_128481808_128482235_128483244_128483935_128485265_128485351_128485608_128485686_128486127_128486300_128497997_128498506_128503786
ENSMUSG00000061894.16_8	chr4	-	3450	8	NIC	ENSMUSG00000061894.16	novel	5364	8	NA	NA	5	-1	intron_retention	FALSE	canonical	2	2	junction_7	7.34846922834953	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGATGTCTTTACAAATGCT	NA	False	NA	NA	False	AATACA	-15	NA	128503822	128479168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_128480638_128481808_128482238_128483244_128483935_128485265_128485351_128485608_128485686_128486127_128486300_128497997_128498506_128503802
ENSMUSG00000061898.11_0	chr5	-	6271	4	NIC	ENSMUSG00000061898.11	novel	3335	5	NA	NA	-2	-4	intron_retention	FALSE	canonical	3	25	junction_3	5.43650214343336	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATGCTGTTTATGTGT	NA	False	NA	NA	False	TTTAAA	-13	NA	143166532	143157945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_143160814_143161790_143161887_143162219_143165298_143166303
ENSMUSG00000061898.11_1	chr5	-	2434	1	ISM	ENSMUSG00000061898.11	ENSMUST00000049861.11	3335	5	6111	0	2115	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGTTTATGTGTTGTGT	5378	False	NA	NA	False	GATAAA	-3	NA	143160374	143157940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_143157900_143160400
ENSMUSG00000061898.11_2	chr5	-	3357	5	FSM	ENSMUSG00000061898.11	ENSMUST00000049861.11	3335	5	-29	7	16	-6	multi-exon	FALSE	canonical	3	25	junction_4	6.20483682299543	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACCATGCTGTTTATGT	NA	False	NA	NA	False	TTTAAA	-11	NA	143166514	143157947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143160814_143161790_143161887_143162219_143162347_143165240_143165298_143166303
ENSMUSG00000061898.11_3	chr5	-	5388	3	FSM	ENSMUSG00000061898.11	ENSMUST00000166382.5	3238	3	-2154	4	1842	-4	multi-exon	FALSE	canonical	3	29	junction_1	4.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATGCTGTTTATGTGT	1109	False	NA	NA	False	TTTAAA	-13	NA	143164643	143157945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_143160814_143161790_143161887_143162219
ENSMUSG00000061898.11_4	chr5	-	3374	5	NNC	ENSMUSG00000061898.11	novel	3480	5	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	14.3243673507768	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACCATGCTGTTTATGT	NA	False	NA	NA	False	TTTAAA	-11	NA	143166528	143157947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_143160814_143161790_143161887_143162219_143162347_143165240_143165301_143166303
ENSMUSG00000061904.13_0	chr10	-	1339	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	55	218	-1	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	2411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTATGAGTTTGTTATT	NA	False	NA	-5	True	AATAAA	-15	NA	90959866	90952653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
ENSMUSG00000061904.13_11	chr10	-	5069	6	NIC	ENSMUSG00000061904.13	novel	1341	8	NA	NA	-2	0	intron_retention	FALSE	canonical	1	1248	junction_5	1149.29219957329	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTATGAGTTTGTTATT	NA	False	NA	-5	True	AATAAA	-15	NA	90959867	90952653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90959569_90959777
ENSMUSG00000061904.13_9	chr10	-	2853	7	NIC	ENSMUSG00000061904.13	novel	1341	8	NA	NA	-1	0	intron_retention	FALSE	canonical	1	1248	junction_6	1076.15746472758	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTATGAGTTTGTTATT	NA	False	NA	-5	True	AATAAA	-15	NA	90959866	90952653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90959569_90959777
ENSMUSG00000061950.18_11	chr17	+	3661	20	FSM	ENSMUSG00000061950.18	ENSMUST00000160664.8	3784	20	48	75	-2	-9	multi-exon	FALSE	canonical	3	222	junction_1	42.2814078706415	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGAGAGACACCACCCA	NA	False	NA	8	True	AATAAA	-18	NA	66090408	66148842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_66090445_66090618_66090664_66110205_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
ENSMUSG00000061950.18_12	chr17	+	3732	20	FSM	ENSMUSG00000061950.18	ENSMUST00000073104.11	3850	20	39	79	-22	-9	multi-exon	FALSE	canonical	3	102	junction_2	67.7698974676079	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGAGAGACACCACCCA	NA	False	NA	8	True	AATAAA	-18	NA	66090388	66148842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_66090445_66090618_66090664_66110154_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
ENSMUSG00000061950.18_18	chr17	+	3768	19	ISM	ENSMUSG00000061950.18	ENSMUST00000160664.8	3784	20	115	75	65	-9	3prime_fragment	FALSE	canonical	3	294	junction_8	32.8404767562873	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGAGAGACACCACCCA	NA	False	NA	8	True	AATAAA	-18	NA	66090475	66148842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_66090664_66110205_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
ENSMUSG00000061950.18_32	chr17	+	3815	19	ISM	ENSMUSG00000061950.18	ENSMUST00000073104.11	3850	20	129	80	68	-10	3prime_fragment	FALSE	canonical	3	102	junction_1	64.6871149418968	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAGAGAGACACCACCC	NA	False	NA	7	True	AATAAA	-17	NA	66090478	66148841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_66090664_66110154_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
ENSMUSG00000061950.18_7	chr17	+	3696	20	NIC	ENSMUSG00000061950.18	novel	664	7	NA	NA	169	-9	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	77.0463399789706	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGAGAGACACCACCCA	NA	False	NA	8	True	AATAAA	-18	NA	66089943	66148842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_66090015_66090618_66090664_66110205_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
ENSMUSG00000061979.9_0	chr5	-	2270	11	FSM	ENSMUSG00000061979.9	ENSMUST00000076228.3	2321	11	29	22	29	-22	multi-exon	FALSE	canonical	3	313	junction_2	26.6850145212627	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAATGGAGGTCTTGTAA	NA	False	NA	-18	True	AATAAA	-20	NA	134205584	134176914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134177846_134182962_134183049_134184578_134184753_134186429_134186518_134192462_134192645_134194177_134194263_134195503_134195556_134197050_134197118_134198056_134198186_134200685_134200816_134205238
ENSMUSG00000061979.9_24	chr5	-	2095	10	NIC	ENSMUSG00000061979.9	novel	2321	11	NA	NA	30	-22	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	114.615083143322	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAATGGAGGTCTTGTAA	NA	False	NA	-18	True	AATAAA	-20	NA	134205583	134176914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_134177846_134182962_134183049_134186429_134186518_134192462_134192645_134194177_134194263_134195503_134195556_134197050_134197118_134198056_134198186_134200685_134200816_134205238
ENSMUSG00000061981.15_0	chr11	+	2575	11	FSM	ENSMUSG00000061981.15	ENSMUST00000072289.12	2621	11	43	3	-10	0	multi-exon	FALSE	canonical	3	351	junction_3	23.4778619128744	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTTTCATCGTATATTC	NA	False	NA	18	True	AATAAA	-15	NA	77928799	77951257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77928939_77940303_77940386_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
ENSMUSG00000061981.15_8	chr11	+	2674	12	FSM	ENSMUSG00000061981.15	ENSMUST00000100784.9	2699	12	25	0	-18	0	multi-exon	FALSE	canonical	3	22	junction_2	138.547303733782	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTTTCATCGTATATTC	NA	False	NA	18	True	AATAAA	-15	NA	77928791	77951257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77928939_77940303_77940386_77944188_77944280_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
ENSMUSG00000061983.8_0	chr10	-	495	6	FSM	ENSMUSG00000061983.8	ENSMUST00000218107.2	584	6	75	14	2	1	multi-exon	FALSE	canonical	3	2594	junction_5	774.773670177298	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTCTCTTGTATTTCTT	NA	False	NA	-17	True	AATAAA	-14	NA	23663098	23661094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891_23662943_23663053
ENSMUSG00000061983.8_1	chr10	-	503	5	FSM	ENSMUSG00000061983.8	ENSMUST00000220070.2	494	5	-8	-1	-8	1	multi-exon	FALSE	canonical	3	3174	junction_1	596.623153674076	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTCTCTTGTATTTCTT	NA	False	NA	-17	True	AATAAA	-14	NA	23662995	23661094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891
ENSMUSG00000061983.8_11	chr10	-	627	6	NIC	ENSMUSG00000061983.8	novel	490	7	NA	NA	-2	4	intron_retention	FALSE	canonical	3	98	junction_3	1551.61727239677	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTTGTATTTCTTGTT	NA	False	NA	-14	True	AATAAA	-17	NA	23663088	23661091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662779_23662891_23662943_23663053
ENSMUSG00000061983.8_2	chr10	-	383	4	ISM	ENSMUSG00000061983.8	ENSMUST00000220070.2	494	5	226	-2	-61	2	3prime_fragment	FALSE	canonical	3	3174	junction_1	664.216999347519	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	-16	True	AATAAA	-15	NA	23662761	23661093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661
ENSMUSG00000061983.8_7	chr10	-	628	1	FSM	ENSMUSG00000070063.3	ENSMUST00000093556.3	129	1	-349	-150	-349	150	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTCTCTTGTATTTCTT	NA	False	NA	-17	True	AATAAA	-14	NA	23661722	23661094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_23661100_23661700
ENSMUSG00000062006.13_0	chr3	-	426	5	FSM	ENSMUSG00000062006.13	ENSMUST00000079085.11	480	5	55	-1	-1	1	multi-exon	FALSE	canonical	3	6284	junction_4	1283.0290331867	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTACGCTTCCGTTATCTG	NA	False	NA	-18	True	AATAAA	-13	NA	130523992	130520486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523966
ENSMUSG00000062006.13_1	chr3	-	527	5	FSM	ENSMUSG00000062006.13	ENSMUST00000196202.5	495	5	6	-38	6	1	multi-exon	FALSE	canonical	3	274	junction_4	3611.9776092883	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTACGCTTCCGTTATCTG	NA	False	NA	-18	True	AATAAA	-13	NA	130523964	130520486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523837
ENSMUSG00000062006.13_2	chr3	-	599	5	FSM	ENSMUSG00000062006.13	ENSMUST00000062601.14	624	5	18	7	2	1	multi-exon	FALSE	canonical	3	513	junction_4	3512.03875085398	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTACGCTTCCGTTATCTG	NA	False	NA	-18	True	AATAAA	-13	NA	130523968	130520486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523769
ENSMUSG00000062006.13_3	chr3	-	1410	4	ISM	ENSMUSG00000062006.13	ENSMUST00000062601.14	624	5	25	7	9	1	intron_retention	FALSE	canonical	3	7006	junction_1	1068.10122283528	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTACGCTTCCGTTATCTG	NA	False	NA	-18	True	AATAAA	-13	NA	130523961	130520486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877
ENSMUSG00000062006.13_5	chr3	-	113	1	FSM	ENSMUSG00000062006.13	ENSMUST00000199001.2	573	1	456	4	456	1	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTACGCTTCCGTTATCTG	NA	False	NA	-18	True	AATAAA	-13	NA	130520599	130520486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_130520500_130520600
ENSMUSG00000062007.14_0	chr8	+	1677	6	FSM	ENSMUSG00000062007.14	ENSMUST00000072097.14	1824	6	19	128	19	-128	multi-exon	FALSE	canonical	3	5	junction_2	2.28035085019828	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTTTAAAATGTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72943500	72955243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72943532_72947282_72947430_72950639_72950730_72951582_72951749_72952211_72952332_72954120
ENSMUSG00000062012.15_0	chr17	-	2103	6	FSM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	0	1	0	-1	multi-exon	FALSE	canonical	3	79	junction_1	5.98665181883831	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGGCTCTGTGTGCTT	4823	False	NA	-1	True	ATTAAA	-20	NA	23805206	23794818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
ENSMUSG00000062012.15_1	chr17	-	2070	6	NIC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	27.6579102609	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCTTGGCTCTGTGTGCT	4834	False	NA	-2	True	ATTAAA	-19	NA	23805195	23794819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_23796086_23799085_23799207_23799744_23799837_23800051_23800245_23804411_23804549_23804934
ENSMUSG00000062012.15_10	chr17	-	1706	2	FSM	ENSMUSG00000062012.15	ENSMUST00000228942.2	655	2	114	-1165	114	368	multi-exon	FALSE	canonical	3	79	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATAATAATAGTTATTA	4865	False	NA	NA	False	NA	NA	NA	23799155	23794449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23796086_23799085
ENSMUSG00000062012.15_2	chr17	-	2446	6	NIC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	-3	384	combination_of_known_junctions	TRUE	canonical	3	16	junction_4	28.7012194862866	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTATTGTGGTTGTTGT	4820	False	NA	NA	False	NA	NA	NA	23805209	23794433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800200_23804411_23804549_23804934
ENSMUSG00000062012.15_21	chr17	-	2199	5	ISM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	290	1	234	-1	3prime_fragment	FALSE	canonical	3	79	junction_1	6.22494979899437	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGGCTCTGTGTGCTT	5113	False	NA	-1	True	ATTAAA	-20	NA	23804916	23794818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411
ENSMUSG00000062012.15_4	chr17	-	969	1	ISM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	9420	0	3483	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTGGCTCTGTGTGCTTG	8234	False	NA	0	True	ATTAAA	-21	NA	23795786	23794817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_23794800_23795800
ENSMUSG00000062012.15_9	chr17	-	2154	6	NNC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_1	26.5736711803243	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGGCTCTGTGTGCTT	4823	False	NA	-1	True	ATTAAA	-20	NA	23805206	23794818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_23796137_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
ENSMUSG00000062014.14_1	chr14	-	4125	7	FSM	ENSMUSG00000062014.14	ENSMUST00000111817.8	4171	7	37	9	-21	-9	multi-exon	FALSE	canonical	0	0	junction_3	212.21091447478	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAGAACTTCTAGTGTT	NA	False	NA	-11	True	AATAAA	-9	NA	47059662	47045614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47054842_47054940_47059557
ENSMUSG00000062014.14_2	chr14	-	2325	1	ISM	ENSMUSG00000062014.14	ENSMUST00000111817.8	4171	7	11763	6	5660	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACTTCTAGTGTTTTA	NA	False	NA	-8	True	AATAAA	-12	NA	47047936	47045611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_47045600_47047900
ENSMUSG00000062014.14_5	chr14	-	3857	3	FSM	ENSMUSG00000062014.14	ENSMUST00000228065.2	280	3	-59	-3518	27	-7	multi-exon	FALSE	canonical	2	4	junction_2	282	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAACTTCTAGTGTTTT	NA	False	NA	-9	True	AATAAA	-11	NA	47059672	47045612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_47049281_47051700_47051775_47059557
ENSMUSG00000062014.14_7	chr14	-	4129	7	NNC	ENSMUSG00000062014.14	novel	4171	7	NA	NA	-22	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	212.21091447478	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGAACTTCTAGTGTTT	NA	False	NA	-10	True	AATAAA	-10	NA	47059663	47045613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_47049281_47051700_47051775_47052361_47052446_47053054_47053106_47053634_47053685_47054842_47054940_47059557
ENSMUSG00000062031.14_1	chr7	+	2963	14	FSM	ENSMUSG00000062031.14	ENSMUST00000079403.11	2981	14	10	8	10	0	multi-exon	FALSE	canonical	3	42	junction_1	11.3032434995212	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCAGAGTGTGTGATG	NA	False	NA	7	True	ATTAAA	-19	NA	140521503	140527569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140521557_140522197_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140524996_140525150_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
ENSMUSG00000062031.14_13	chr7	+	2913	13	ISM	ENSMUSG00000062031.14	ENSMUST00000079403.11	2981	14	703	6	-71	0	3prime_fragment	FALSE	canonical	3	43	junction_3	10.7480618407848	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGAGTGTGTGATGGA	NA	False	NA	9	True	ATTAAA	-21	NA	140522196	140527571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140524996_140525150_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
ENSMUSG00000062031.14_2	chr7	+	3121	13	FSM	ENSMUSG00000062031.14	ENSMUST00000169736.8	3145	13	24	0	9	0	multi-exon	FALSE	canonical	3	42	junction_1	11.7505910016854	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGAGTGTGTGATGGA	NA	False	NA	9	True	ATTAAA	-21	NA	140521502	140527571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140521557_140522197_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
ENSMUSG00000062031.14_3	chr7	+	2960	14	FSM	ENSMUSG00000062031.14	ENSMUST00000164580.3	3001	14	35	6	2	-6	multi-exon	FALSE	canonical	0	0	junction_13	17.6205904299655	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCTGAAGTCAGAGTGT	NA	False	NA	1	True	ATTAAA	-13	NA	140521495	140527563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140521557_140522197_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140524996_140525150_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526706
ENSMUSG00000062038.6_0	chr5	-	527	1	FSM	ENSMUSG00000062038.6	ENSMUST00000078246.6	319	1	-65	-143	-65	143	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGGGTACGGTCTTTAT	NA	False	NA	NA	False	AGTAAA	-14	NA	13171798	13171271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_13171300_13171800
ENSMUSG00000062040.15_0	chr7	-	3144	5	FSM	ENSMUSG00000062040.15	ENSMUST00000053521.15	3150	5	6	0	6	0	multi-exon	FALSE	canonical	2	2	junction_4	19.4084388862165	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTTCTCTTCTGTCAC	NA	False	NA	0	True	AATATA	-16	NA	29605523	29593140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605478
ENSMUSG00000062040.15_1	chr7	-	3675	5	NIC	ENSMUSG00000062040.15	novel	3845	5	NA	NA	1	-113	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	15.9902313929474	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACGAACTTGAAAGTGTA	NA	False	NA	NA	False	AGTAAA	-11	NA	29605956	29592870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603469_29605634
ENSMUSG00000062040.15_2	chr7	-	2485	1	ISM	ENSMUSG00000062040.15	ENSMUST00000162592.8	3845	5	10642	113	2933	-113	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACGAACTTGAAAGTGTA	NA	False	NA	NA	False	AGTAAA	-11	NA	29595355	29592870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_29592900_29595400
ENSMUSG00000062040.15_3	chr7	-	3398	5	NIC	ENSMUSG00000062040.15	novel	3150	5	NA	NA	6	-113	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	18.1245689603919	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACGAACTTGAAAGTGTA	NA	False	NA	NA	False	AGTAAA	-11	NA	29605523	29592870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603469_29605478
ENSMUSG00000062040.15_5	chr7	-	3517	5	NIC	ENSMUSG00000062040.15	novel	3845	5	NA	NA	20	-113	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	19.4084388862165	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACGAACTTGAAAGTGTA	NA	False	NA	NA	False	AGTAAA	-11	NA	29605465	29592870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603469_29605301
ENSMUSG00000062054.8_1	chr12	+	864	6	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	6	-214	combination_of_known_splicesites	FALSE	canonical	3	85	junction_2	143.346293987672	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCTGTTCATGATTATT	NA	False	NA	7	True	ATTAAA	-17	NA	21366420	21373606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_21366514_21367376_21367430_21367930_21368048_21369770_21369933_21371334_21371457_21373289
ENSMUSG00000062054.8_15	chr12	+	4123	4	FSM	ENSMUSG00000062054.8	ENSMUST00000223345.2	1890	4	8	-2241	8	-220	multi-exon	FALSE	canonical	3	412	junction_2	19.3964487013015	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTTAACTTCTGTTCATG	NA	False	NA	1	True	ATTAAA	-11	NA	21366422	21373600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770
ENSMUSG00000062054.8_2	chr12	+	895	6	FSM	ENSMUSG00000062054.8	ENSMUST00000076813.8	1141	6	32	214	7	-214	multi-exon	FALSE	canonical	3	356	junction_4	39.1131691377725	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCTGTTCATGATTATT	NA	False	NA	7	True	ATTAAA	-17	NA	21366421	21373606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
ENSMUSG00000062064.7_3	chr4	+	1702	7	ISM	ENSMUSG00000062064.7	ENSMUST00000059893.8	1578	12	8866	-505	10	505	3prime_fragment	FALSE	canonical	3	15	junction_6	2.35702260395516	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAACAAACGAACAAA	1372	False	NA	NA	False	NA	NA	NA	150242294	150253444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_150242665_150242931_150243123_150244475_150244587_150247654_150247757_150249565_150249642_150250811_150250940_150252720
ENSMUSG00000062064.7_5	chr4	+	1405	6	ISM	ENSMUSG00000062064.7	ENSMUST00000059893.8	1578	12	9434	-509	578	509	3prime_fragment	FALSE	canonical	3	15	junction_5	2.57681974534502	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAACAAACGAACAAACAAA	1940	False	NA	NA	False	NA	NA	NA	150242862	150253448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_150243123_150244475_150244587_150247654_150247757_150249565_150249642_150250811_150250940_150252720
ENSMUSG00000062064.7_6	chr4	+	954	3	ISM	ENSMUSG00000062064.7	ENSMUST00000059893.8	1578	12	16115	-509	7259	509	3prime_fragment	FALSE	canonical	3	15	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAACAAACGAACAAACAAA	950	False	NA	NA	False	NA	NA	NA	150249543	150253448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_150249642_150250811_150250940_150252720
ENSMUSG00000062070.13_0	chrX	+	1753	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	63	9	0	-9	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	2765	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGAAGTTTTTCCTGT	NA	False	NA	NA	False	AATAAA	-11	NA	105230768	105247296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
ENSMUSG00000062075.14_1	chr10	-	3360	12	FSM	ENSMUSG00000062075.14	ENSMUST00000179022.8	3370	12	4	6	4	-6	multi-exon	FALSE	canonical	3	226	junction_8	24.5238962565761	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGCAGCCTCAGAGTAGA	3115	False	NA	-7	True	AATAAA	-11	NA	80754075	80737203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80740846_80740914_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
ENSMUSG00000062075.14_2	chr10	-	1258	1	ISM	ENSMUSG00000062075.14	ENSMUST00000057623.14	3531	12	15622	163	3789	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCCTCAGAGTAGATCTT	3794	False	NA	-3	True	AATAAA	-15	NA	80738457	80737199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_80737200_80738500
ENSMUSG00000062075.14_4	chr10	-	3429	11	NIC	ENSMUSG00000062075.14	novel	3531	12	NA	NA	4	-6	intron_retention	FALSE	canonical	3	226	junction_7	23.5501592351305	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGCAGCCTCAGAGTAGA	3115	False	NA	-7	True	AATAAA	-11	NA	80754075	80737203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
ENSMUSG00000062077.15_0	chr5	+	1531	9	FSM	ENSMUSG00000062077.15	ENSMUST00000013771.15	1434	9	-100	3	-100	-3	multi-exon	TRUE	canonical	2	14	junction_1	4.29389100932942	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGTCCTCGGCTCCTTTTGC	NA	False	NA	3	True	AATAAA	-16	NA	31273955	31294969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31274422_31288385_31288559_31289331_31289504_31291393_31291490_31293386_31293621_31294096_31294120_31294231_31294357_31294464_31294558_31294820
ENSMUSG00000062077.15_1	chr5	+	855	5	ISM	ENSMUSG00000062077.15	ENSMUST00000013771.15	1434	9	19098	5	19076	-5	3prime_fragment	FALSE	canonical	3	18	junction_2	2.9474565306379	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACGTCCTCGGCTCCTTTT	1795	False	NA	1	True	AATAAA	-14	NA	31293153	31294967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_31293621_31294096_31294120_31294231_31294357_31294464_31294558_31294820
ENSMUSG00000062078.16_0	chr17	-	1932	1	ISM	ENSMUSG00000062078.16	ENSMUST00000233645.2	8547	8	110893	3955	5087	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAACTCTGGACTATGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	10427416	10425484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_10425500_10427400
ENSMUSG00000062078.16_1	chr17	-	4544	8	FSM	ENSMUSG00000062078.16	ENSMUST00000233645.2	8547	8	43	3960	24	-10	multi-exon	FALSE	canonical	3	1001	junction_1	100.591718732463	2093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTACTAACTCTGGACTA	NA	False	NA	NA	False	AATAAA	-13	NA	10538266	10425489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_10428561_10432287_10432363_10435088_10435389_10436644_10436733_10457821_10457966_10492875_10492993_10501767_10501911_10537660
ENSMUSG00000062078.16_82	chr17	-	5400	7	FSM	ENSMUSG00000062078.16	ENSMUST00000233828.2	5428	7	27	1	27	-1	multi-exon	FALSE	canonical	3	312	junction_1	334.742396810177	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGAAACTTTGTTTG	NA	False	NA	NA	False	AATAAA	-10	NA	10538263	10429118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_10433124_10435088_10435389_10436644_10436733_10457821_10457966_10492875_10492993_10501767_10501911_10537660
ENSMUSG00000062078.16_85	chr17	-	2887	1	ISM	ENSMUSG00000062078.16	ENSMUST00000042296.9	6737	7	106304	11	498	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGAAACTTTGTTTG	NA	False	NA	NA	False	AATAAA	-10	NA	10432005	10429118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_10429100_10432000
ENSMUSG00000062081.7_0	chr14	-	675	1	FSM	ENSMUSG00000062081.7	ENSMUST00000180532.2	378	1	-59	-238	-59	238	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	48317268	48316593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_48316600_48317300
ENSMUSG00000062093.6_0	chr14	-	228	1	FSM	ENSMUSG00000062093.6	ENSMUST00000228705.2	3220	1	2983	9	2002	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATCTCCATAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-7	NA	90133900	90133672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_90133700_90133900
ENSMUSG00000062093.6_1	chr14	-	104	1	FSM	ENSMUSG00000062093.6	ENSMUST00000228705.2	3220	1	151	2965	151	-2617	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAGAA	NA	False	NA	5	True	AATACA	-18	NA	90136732	90136628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_90136600_90136700
ENSMUSG00000062098.12_0	chr2	+	4592	5	FSM	ENSMUSG00000062098.12	ENSMUST00000091556.12	4657	5	62	3	-35	-3	multi-exon	FALSE	canonical	3	50	junction_1	2.87228132326901	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGATTTGCTTTTTTAGTA	NA	False	NA	13	True	AATAAA	-14	NA	138098546	138129339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_138098675_138120885_138121178_138121668_138121760_138122292_138122412_138125377
ENSMUSG00000062098.12_7	chr2	+	3547	1	ISM	ENSMUSG00000062098.12	ENSMUST00000091556.12	4657	5	27308	3	5380	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGATTTGCTTTTTTAGTA	NA	False	NA	13	True	AATAAA	-14	NA	138125792	138129339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_138125800_138129300
ENSMUSG00000062101.13_0	chr17	-	1914	4	FSM	ENSMUSG00000062101.13	ENSMUST00000056147.14	1889	4	-25	0	-25	0	multi-exon	FALSE	canonical	3	31	junction_3	5.90668171555645	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATATTTATGTTGT	NA	False	NA	NA	False	AATAAA	-12	NA	56252284	56245380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_56246994_56247928_56247990_56248185_56248313_56252171
ENSMUSG00000062101.13_1	chr17	-	2174	5	NNC	ENSMUSG00000062101.13	novel	2078	4	NA	NA	-5007	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_3	18.0346887968714	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATATTTATGTTGT	9749	False	NA	NA	False	AATAAA	-12	NA	56261507	56245380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_56246994_56247928_56247990_56248185_56248313_56256223_56256498_56261408
ENSMUSG00000062101.13_3	chr17	-	1688	3	ISM	ENSMUSG00000062101.13	ENSMUST00000056147.14	1889	4	4058	2	4058	-2	3prime_fragment	FALSE	canonical	3	43	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAGAAAATATTTATGTT	NA	False	NA	NA	False	AATAAA	-10	NA	56248201	56245382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_56246994_56247928_56247990_56248185
ENSMUSG00000062101.13_4	chr17	-	1594	1	Genic_Genomic	ENSMUSG00000062101.13	novel	NA	NA	NA	NA	5289	4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTATGTTGTCATT	NA	False	NA	NA	False	AATAAA	-16	NA	56246970	56245376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_56245400_56247000
ENSMUSG00000062110.15_0	chr5	-	2371	9	FSM	ENSMUSG00000062110.15	ENSMUST00000072857.13	3672	9	24	1277	4	-1	multi-exon	FALSE	canonical	3	48	junction_1	6.19979838381862	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTGTCAAGCTGTCGC	NA	False	NA	-7	True	AATAAA	-21	NA	74692386	74366753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_74367057_74372911_74373032_74385975_74386111_74397099_74397246_74558314_74558565_74623220_74623397_74642810_74642939_74680144_74680314_74691442
ENSMUSG00000062110.15_2	chr5	-	1194	7	ISM	ENSMUSG00000062110.15	ENSMUST00000072857.13	3672	9	49536	1277	-3087	-1	3prime_fragment	FALSE	canonical	3	48	junction_1	6.92820323027551	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTGTCAAGCTGTCGC	NA	False	NA	-7	True	AATAAA	-21	NA	74642874	74366753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_74367057_74372911_74373032_74385975_74386111_74397099_74397246_74558314_74558565_74623220_74623397_74642810
ENSMUSG00000062115.16_0	chr11	+	1903	5	FSM	ENSMUSG00000062115.16	ENSMUST00000149770.8	1823	5	-85	5	-85	-3	multi-exon	FALSE	canonical	1	6	junction_2	6.75925291729789	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAAGTGTGCGGCCTGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	59995753	60090018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59996221_60031066_60031197_60084764_60084859_60088614_60088665_60088856
ENSMUSG00000062115.16_1	chr11	+	7280	5	NIC	ENSMUSG00000062115.16	novel	7348	6	NA	NA	-66	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	8.24621125123532	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAAGTGTGCGGCCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	59995772	60090017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_59996221_60075921_60081449_60084764_60084859_60088614_60088665_60088856
ENSMUSG00000062115.16_10	chr11	+	4377	2	ISM	ENSMUSG00000062115.16	ENSMUST00000102688.2	6921	5	18746	4	18746	-2	3prime_fragment	FALSE	canonical	3	20	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGTGTGCGGCCTGTGGA	NA	False	NA	NA	False	AATAAA	-18	NA	60085450	60090019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60088665_60088856
ENSMUSG00000062115.16_11	chr11	+	7432	6	FSM	ENSMUSG00000062115.16	ENSMUST00000064190.13	7348	6	-85	1	-85	-1	multi-exon	FALSE	canonical	2	7	junction_1	5.67097875150313	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGTGCGGCCTGTGGAT	NA	False	NA	NA	False	AATAAA	-19	NA	59995753	60090020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59996221_60031066_60031197_60075921_60081449_60084764_60084859_60088614_60088665_60088856
ENSMUSG00000062115.16_4	chr11	+	6949	5	FSM	ENSMUSG00000062115.16	ENSMUST00000102688.2	6921	5	-31	3	-31	-1	multi-exon	FALSE	canonical	3	11	junction_1	3.69966214673719	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGTGCGGCCTGTGGAT	NA	False	NA	NA	False	AATAAA	-19	NA	60066673	60090020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_60066788_60075921_60081449_60084764_60084859_60088614_60088665_60088856
ENSMUSG00000062115.16_5	chr11	+	7020	2	ISM	ENSMUSG00000062115.16	ENSMUST00000102688.2	6921	5	-9	7174	-9	-2	5prime_fragment	FALSE	canonical	3	11	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAGAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	60066695	60082849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60066788_60075921
ENSMUSG00000062115.16_7	chr11	+	4189	4	ISM	ENSMUSG00000062115.16	ENSMUST00000102688.2	6921	5	11864	2	11864	0	3prime_fragment	FALSE	canonical	3	16	junction_1	1.88561808316413	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGCGGCCTGTGGATG	4135	False	NA	NA	False	AATAAA	-20	NA	60078568	60090021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60081449_60084764_60084859_60088614_60088665_60088856
ENSMUSG00000062115.16_8	chr11	+	4152	1	NIC	ENSMUSG00000062115.16	novel	7348	6	NA	NA	11993	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAGAAAAAAAAAACC	4264	False	NA	NA	False	NA	NA	NA	60078697	60082849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_60078700_60082800
ENSMUSG00000062115.16_9	chr11	+	5040	3	ISM	ENSMUSG00000062115.16	ENSMUST00000149770.8	1823	5	85178	19	14312	-17	3prime_fragment	FALSE	canonical	3	20	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCACGATTGTTTTGGAAG	6583	False	NA	NA	False	AATAAA	-3	NA	60081016	60090004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_60084859_60088614_60088665_60088856
ENSMUSG00000062116.11_0	chr7	-	2011	5	FSM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	29	2	-14	-2	multi-exon	FALSE	canonical	3	51	junction_3	2.54950975679639	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTTAATGACTCTTGAG	6265	False	NA	-7	True	AATAAA	-19	NA	7124458	7117690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_7119200_7119611_7119711_7120784_7120912_7122370_7122410_7124221
ENSMUSG00000062116.11_2	chr7	-	1717	3	ISM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	3594	2	3551	-2	3prime_fragment	FALSE	canonical	3	53	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTTAATGACTCTTGAG	9830	False	NA	-7	True	AATAAA	-19	NA	7120893	7117690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_7119200_7119611_7119711_7120784
ENSMUSG00000062116.11_3	chr7	-	1303	1	ISM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	5494	2	5451	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTTAATGACTCTTGAG	2490	False	NA	-7	True	AATAAA	-19	NA	7118993	7117690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_7117700_7119000
ENSMUSG00000062116.11_5	chr7	-	3604	4	ISM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	248	2	205	-2	intron_retention	FALSE	canonical	3	51	junction_3	2.94392028877595	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTTAATGACTCTTGAG	6484	False	NA	-7	True	AATAAA	-19	NA	7124239	7117690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_7119200_7119611_7119711_7120784_7120912_7122370
ENSMUSG00000062116.11_7	chr7	-	3450	4	NIC	ENSMUSG00000062116.11	novel	2042	5	NA	NA	6	-2	intron_retention	FALSE	canonical	3	53	junction_1	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTTAATGACTCTTGAG	6285	False	NA	-7	True	AATAAA	-19	NA	7124438	7117690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_7119200_7119611_7119711_7120784_7122410_7124221
ENSMUSG00000062116.11_9	chr7	-	1610	2	ISM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	4777	0	4734	0	3prime_fragment	FALSE	canonical	3	53	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTAATGACTCTTGAGGT	1773	False	NA	-5	True	AATAAA	-21	NA	7119710	7117688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_7119200_7119611
ENSMUSG00000062127.12_0	chr3	-	4835	6	FSM	ENSMUSG00000062127.12	ENSMUST00000098763.7	4834	6	-8	7	-5	-7	multi-exon	FALSE	canonical	3	66	junction_1	8.46167832052247	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCATAACTGTCTGGGGG	1464	False	NA	-20	True	ATTAAA	-8	NA	104960275	104909239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_104913445_104915263_104915372_104918508_104918740_104939968_104940077_104946180_104946304_104960215
ENSMUSG00000062127.12_1	chr3	-	2768	1	ISM	ENSMUSG00000062127.12	ENSMUST00000077548.12	4946	6	48460	4	48239	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTGTCTGGGGGAAAAG	4193	False	NA	-15	True	ATTAAA	-13	NA	104912002	104909234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_104909200_104912000
ENSMUSG00000062127.12_11	chr3	-	4824	6	FSM	ENSMUSG00000062127.12	ENSMUST00000197437.5	681	6	-2	-4141	-2	-7	multi-exon	FALSE	canonical	3	7	junction_4	30.009331881933	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCATAACTGTCTGGGGG	1467	False	NA	-20	True	ATTAAA	-8	NA	104960272	104909239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_104913445_104915263_104915372_104918508_104918740_104939968_104940069_104946180_104946304_104960215
ENSMUSG00000062127.12_5	chr3	-	4776	5	ISM	ENSMUSG00000062127.12	ENSMUST00000098763.7	4834	6	13963	7	13937	-7	3prime_fragment	FALSE	canonical	3	66	junction_1	7.1894019222742	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCATAACTGTCTGGGGG	NA	False	NA	-20	True	ATTAAA	-8	NA	104946304	104909239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_104913445_104915263_104915372_104918508_104918740_104939968_104940077_104946180
ENSMUSG00000062157.7_0	chr4	+	3973	7	FSM	ENSMUSG00000062157.7	ENSMUST00000074408.7	4182	7	202	7	202	-7	multi-exon	TRUE	canonical	3	21	junction_5	3.02305952453618	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAAGCTAATGTGCACG	NA	False	NA	0	True	AATAAA	-14	NA	135413799	135435485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_135413911_135417832_135417957_135426100_135426283_135428538_135428682_135431020_135431181_135431479_135431611_135432363
ENSMUSG00000062157.7_6	chr4	+	3369	2	ISM	ENSMUSG00000062157.7	ENSMUST00000074408.7	4182	7	17769	4	17769	-4	3prime_fragment	FALSE	canonical	3	21	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGCTAATGTGCACGCAG	NA	False	NA	3	True	AATAAA	-17	NA	135431366	135435488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135431611_135432363
ENSMUSG00000062157.7_7	chr4	+	2349	1	ISM	ENSMUSG00000062157.7	ENSMUST00000074408.7	4182	7	19543	3	19543	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTAATGTGCACGCAGT	NA	False	NA	4	True	AATAAA	-18	NA	135433140	135435489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_135433100_135435500
ENSMUSG00000062169.14_16	chr1	+	1883	1	ISM	ENSMUSG00000062169.14	ENSMUST00000134115.8	3268	5	16169	12	11380	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACAAATTAATCTGATTG	NA	False	NA	NA	False	NA	NA	NA	180994664	180996547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_180994700_180996500
ENSMUSG00000062169.14_2	chr1	+	641	5	FSM	ENSMUSG00000062169.14	ENSMUST00000134115.8	3268	5	40	2587	40	26	multi-exon	FALSE	canonical	3	1843	junction_1	136.918543302213	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCTGAACTCCAGCAAAT	NA	False	NA	29	True	AATAAA	-22	NA	180978535	180993972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180989639_180989781_180993745
ENSMUSG00000062170.13_0	chrX	+	682	4	FSM	ENSMUSG00000062170.13	ENSMUST00000114647.8	679	4	-14	11	-14	-11	multi-exon	FALSE	canonical	3	331	junction_1	201.191451110627	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAATCAGAATCTGGATTC	NA	False	NA	16	True	ATTAAA	-16	NA	67805472	67848162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_67805838_67815650_67815748_67847210_67847300_67848031
ENSMUSG00000062170.13_2	chrX	+	760	5	FSM	ENSMUSG00000062170.13	ENSMUST00000069731.12	799	5	28	11	-14	-11	multi-exon	FALSE	canonical	3	455	junction_2	146.787899705664	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAATCAGAATCTGGATTC	NA	False	NA	16	True	ATTAAA	-16	NA	67805472	67848162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_67805838_67807537_67807616_67815650_67815748_67847210_67847300_67848031
ENSMUSG00000062170.13_3	chrX	+	897	6	FSM	ENSMUSG00000062170.13	ENSMUST00000071848.7	842	6	-67	12	-14	-12	multi-exon	FALSE	canonical	3	35	junction_2	319.056484027515	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATCAGAATCTGGATT	NA	False	NA	15	True	ATTAAA	-15	NA	67805472	67848161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_67805838_67807537_67807616_67812561_67812700_67815650_67815748_67847210_67847300_67848031
ENSMUSG00000062175.14_0	chr2	+	2794	3	FSM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	97	9	4	-9	multi-exon	FALSE	canonical	3	217	junction_2	7.5	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCAAACTGAATTTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	156682023	156697481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156682159_156686075_156686302_156695048
ENSMUSG00000062175.14_1	chr2	+	2686	4	FSM	ENSMUSG00000062175.14	ENSMUST00000073352.10	2690	4	-5	9	-5	-9	multi-exon	FALSE	canonical	3	55	junction_3	80.1373820385967	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCAAACTGAATTTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	156682014	156697481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_156682159_156686075_156686302_156695048_156695149_156695265
ENSMUSG00000062175.14_16	chr2	+	2774	3	NIC	ENSMUSG00000062175.14	novel	484	4	NA	NA	-46	-9	intron_retention	FALSE	canonical	3	38	junction_1	89.5	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCAAACTGAATTTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	156682895	156697481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_156683011_156686075_156686302_156695048
ENSMUSG00000062175.14_17	chr2	+	2633	4	NIC	ENSMUSG00000062175.14	novel	484	4	NA	NA	-22	-9	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	80.6735534250365	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCAAACTGAATTTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	156682919	156697481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_156683011_156686075_156686302_156695048_156695149_156695265
ENSMUSG00000062175.14_21	chr2	+	2606	2	ISM	ENSMUSG00000062175.14	ENSMUST00000073352.10	2690	4	4109	9	3187	-9	intron_retention	FALSE	canonical	3	217	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCAAACTGAATTTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	156686128	156697481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_156686302_156695048
ENSMUSG00000062175.14_25	chr2	+	1760	1	ISM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	13795	9	2966	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCAAACTGAATTTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	156695721	156697481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_156695700_156697500
ENSMUSG00000062190.13_0	chr6	+	3056	9	FSM	ENSMUSG00000062190.13	ENSMUST00000050077.15	2509	9	409	-956	-42	0	multi-exon	TRUE	canonical	3	58	junction_1	7.80924932371864	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTTATGGAGTCTTAAT	NA	False	NA	7	True	AATAAA	-17	NA	57680029	57716423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_57680249_57689972_57690091_57699481_57699690_57700473_57700622_57701530_57701678_57703401_57703585_57709180_57709358_57711001_57711075_57714640
ENSMUSG00000062190.13_10	chr6	+	1976	3	ISM	ENSMUSG00000062190.13	ENSMUST00000153777.2	1948	10	29165	1	29165	-1	intron_retention	FALSE	canonical	3	62	junction_1	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGACTTATGGAGTCTTAA	1805	False	NA	6	True	AATAAA	-16	NA	57709236	57716422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_57709358_57711001_57711075_57714640
ENSMUSG00000062190.13_11	chr6	+	1450	1	NIC	ENSMUSG00000062190.13	novel	2245	10	NA	NA	34900	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGACTTATGGAGTCTTA	7540	False	NA	5	True	AATAAA	-15	NA	57714971	57716421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_57715000_57716400
ENSMUSG00000062198.6_0	chr12	-	1797	3	FSM	ENSMUSG00000062198.6	ENSMUST00000136281.2	1160	3	-645	8	-645	-8	multi-exon	FALSE	canonical	3	214	junction_1	1	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATATATATCTGAAAT	NA	False	NA	-22	True	AATAAA	-17	NA	55101531	55092468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_55092729_55095671_55095763_55100085
ENSMUSG00000062198.6_1	chr12	-	1085	8	FSM	ENSMUSG00000062198.6	ENSMUST00000021406.6	1105	8	-3	23	-3	-8	multi-exon	FALSE	canonical	3	143	junction_4	27.3898536256157	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATATATATCTGAAAT	NA	False	NA	-22	True	AATAAA	-17	NA	55126898	55092468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
ENSMUSG00000062198.6_17	chr12	-	1673	5	ISM	ENSMUSG00000062198.6	ENSMUST00000222572.2	798	6	-9	2968	-3	-2524	5prime_fragment	FALSE	canonical	3	37	junction_1	70.9449610613749	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55126898	55103062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_55104138_55106159_55106364_55107839_55107979_55109772_55109895_55126765
ENSMUSG00000062198.6_18	chr12	-	3668	4	NIC	ENSMUSG00000062198.6	novel	4110	5	NA	NA	18	-2524	intron_retention	FALSE	canonical	3	175	junction_2	23.4236347876812	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55126871	55103062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_55106364_55107839_55107979_55109772_55109895_55126765
ENSMUSG00000062198.6_22	chr12	-	1592	5	FSM	ENSMUSG00000062198.6	ENSMUST00000156852.2	4110	5	-4	2522	-2	-2522	multi-exon	FALSE	canonical	3	143	junction_1	29.9864552756741	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55126897	55103060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
ENSMUSG00000062198.6_5	chr12	-	2995	2	ISM	ENSMUSG00000062198.6	ENSMUST00000136281.2	1160	3	2480	8	2480	-8	3prime_fragment	FALSE	canonical	3	214	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATATATATCTGAAAT	NA	False	NA	-22	True	AATAAA	-17	NA	55098406	55092468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_55092729_55095671
ENSMUSG00000062198.6_6	chr12	-	1078	8	Fusion	ENSMUSG00000112022.3_ENSMUSG00000062198.6	novel	1105	8	NA	NA	-51	-8	multi-exon	FALSE	canonical	3	143	junction_4	24.4423520027957	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATATATATCTGAAAT	NA	False	NA	-22	True	AATAAA	-17	NA	55201732	55092468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55201606
ENSMUSG00000062198.6_8	chr12	-	1156	8	NIC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	1	-9	combination_of_known_junctions	FALSE	canonical	3	37	junction_4	59.7586984531652	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATATATATATCTGAAA	NA	False	NA	-23	True	AATAAA	-16	NA	55126888	55092469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106159_55106364_55107839_55107979_55109772_55109895_55126765
ENSMUSG00000062202.15_1	chr17	-	4814	11	FSM	ENSMUSG00000062202.15	ENSMUST00000168787.8	7058	11	227	2017	1	0	multi-exon	FALSE	canonical	3	53	junction_4	22.2551117723547	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATACAAGTGTTTCATT	NA	False	NA	NA	False	ATTAAA	-18	NA	30795235	30436514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
ENSMUSG00000062202.15_2	chr17	-	2652	1	ISM	ENSMUSG00000062202.15	ENSMUST00000168787.8	7058	11	356296	2017	72140	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATACAAGTGTTTCATT	NA	False	NA	NA	False	ATTAAA	-18	NA	30439166	30436514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_30436500_30439200
ENSMUSG00000062202.15_6	chr17	-	4610	12	FSM	ENSMUSG00000062202.15	ENSMUST00000079924.8	2007	12	-88	-2515	2	0	multi-exon	FALSE	canonical	3	6	junction_1	31.2708773237183	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATACAAGTGTTTCATT	NA	False	NA	NA	False	ATTAAA	-18	NA	30795231	30436514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_30439119_30439318_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
ENSMUSG00000062203.16_0	chr16	-	2568	15	FSM	ENSMUSG00000062203.16	ENSMUST00000167571.8	3716	15	39	1109	-22	0	multi-exon	FALSE	canonical	3	573	junction_12	261.982473319363	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTTCGGTATTTGAAT	NA	False	NA	-17	True	AATAAA	-13	NA	11072095	11038264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_11038744_11040448_11040618_11041075_11041166_11042283_11042458_11045978_11046060_11047072_11047167_11048373_11048515_11048700_11048856_11050395_11050577_11053229_11053308_11055394_11055429_11056735_11056961_11058529_11058572_11058668_11058705_11071506
ENSMUSG00000062203.16_2	chr16	-	2572	15	FSM	ENSMUSG00000062203.16	ENSMUST00000080030.14	2898	15	-23	349	-23	0	multi-exon	FALSE	canonical	3	773	junction_12	224.149458156465	1067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTTCGGTATTTGAAT	NA	False	NA	-17	True	AATAAA	-13	NA	11072096	11038264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_11038744_11040448_11040618_11041075_11041166_11042283_11042458_11045978_11046060_11047072_11047167_11048373_11048515_11048700_11048856_11050395_11050577_11053229_11053308_11055394_11055429_11056735_11056964_11058529_11058572_11058668_11058705_11071506
ENSMUSG00000062210.14_0	chr18	+	1706	2	FSM	ENSMUSG00000062210.14	ENSMUST00000148989.3	1002	2	72	-776	8	-5	multi-exon	FALSE	canonical	3	36	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGACTCGGGATTTAGATT	NA	False	NA	6	True	AATAAA	-19	NA	50112565	50224844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_50112694_50223266
ENSMUSG00000062210.14_2	chr18	+	1652	2	NNC	ENSMUSG00000062210.14	novel	1002	2	NA	NA	29806	-5	intron_retention	FALSE	canonical	1	1	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGACTCGGGATTTAGATT	NA	False	NA	6	True	AATAAA	-19	NA	50216154	50224844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_50216229_50223266
ENSMUSG00000062210.14_3	chr18	+	1390	1	NIC	ENSMUSG00000062210.14	novel	2385	3	NA	NA	37106	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGACTCGGGATTTAGATT	NA	False	NA	6	True	AATAAA	-19	NA	50223454	50224844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_50223500_50224800
ENSMUSG00000062232.15_0	chr3	-	7679	30	FSM	ENSMUSG00000062232.15	ENSMUST00000195708.2	6964	30	-715	0	-715	0	multi-exon	FALSE	canonical	3	31	junction_16	7.69637869042917	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCTTGTCTAAACTTTT	NA	False	NA	-21	True	AATAAA	-13	NA	79194539	78969837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_78971869_78973879_78974180_78976195_78976756_78977296_78977523_78981614_78981768_78986312_78986520_78988368_78988593_78989930_78989955_78990505_78990630_78990715_78990928_78993051_78993436_78995151_78995393_78995951_78996110_78999118_78999366_78999803_78999913_79000006_79000211_79000301_79000410_79001591_79001757_79002119_79002273_79005526_79005686_79006400_79006538_79011269_79011448_79019477_79019610_79077045_79077064_79080214_79080383_79082280_79082357_79103241_79103326_79117997_79118055_79122263_79122335_79193770
ENSMUSG00000062232.15_10	chr3	-	3219	5	ISM	ENSMUSG00000062232.15	ENSMUST00000118100.8	6573	24	70568	15	70568	0	3prime_fragment	FALSE	canonical	3	35	junction_2	9.80752262296652	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCTTGTCTAAACTTTT	NA	False	NA	-21	True	AATAAA	-13	NA	78981716	78969837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_78971869_78973879_78974180_78976195_78976756_78977296_78977523_78981614
ENSMUSG00000062232.15_13	chr3	-	2189	2	ISM	ENSMUSG00000062232.15	ENSMUST00000118100.8	6573	24	78229	33	78229	-18	3prime_fragment	FALSE	canonical	3	56	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATATAACATAA	NA	False	NA	-39	True	NA	NA	NA	78974055	78969855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_78971869_78973879
ENSMUSG00000062232.15_2	chr3	-	7639	29	NIC	ENSMUSG00000062232.15	novel	6964	30	NA	NA	-708	-15	combination_of_known_splicesites	FALSE	canonical	2	16	junction_23	9.02716987313119	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATATAACATAAAGC	NA	False	NA	-36	True	NA	NA	NA	79194532	78969852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_78971869_78973879_78974180_78976195_78976756_78977296_78977523_78981614_78981768_78986312_78986520_78988368_78988593_78989930_78989955_78990505_78990630_78990715_78990928_78993051_78993436_78995151_78995393_78995951_78996110_78999118_78999366_78999803_78999913_79000006_79000211_79000301_79000410_79001591_79001757_79002119_79002273_79005526_79005686_79006400_79006538_79011269_79011448_79019477_79019610_79080214_79080383_79082280_79082357_79103241_79103326_79117997_79118055_79122263_79122335_79193770
ENSMUSG00000062232.15_20	chr3	-	3524	7	ISM	ENSMUSG00000062232.15	ENSMUST00000118100.8	6573	24	63862	22	63862	-7	3prime_fragment	FALSE	canonical	3	35	junction_2	8.62167810425171	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACATAAAGCCTTGTCTA	NA	False	NA	-28	True	AATAAA	-6	NA	78988422	78969844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_78971869_78973879_78974180_78976195_78976756_78977296_78977523_78981614_78981768_78986312_78986520_78988368
ENSMUSG00000062232.15_25	chr3	-	2575	3	ISM	ENSMUSG00000062232.15	ENSMUST00000118100.8	6573	24	75848	12	75848	0	3prime_fragment	FALSE	canonical	3	35	junction_2	10.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTCTAAACTTTTCAT	NA	False	NA	-18	True	AATAAA	-16	NA	78976436	78969834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_78971869_78973879_78974180_78976195
ENSMUSG00000062232.15_26	chr3	-	5869	20	ISM	ENSMUSG00000062232.15	ENSMUST00000118100.8	6573	24	46714	20	46714	-5	3prime_fragment	FALSE	canonical	3	31	junction_16	8.63799504796996	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAAAGCCTTGTCTAAA	NA	False	NA	-26	True	AATAAA	-8	NA	79005570	78969842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_78971869_78973879_78974180_78976195_78976756_78977296_78977523_78981614_78981768_78986312_78986520_78988368_78988593_78989930_78989955_78990505_78990630_78990715_78990928_78993051_78993436_78995151_78995393_78995951_78996110_78999118_78999366_78999803_78999913_79000006_79000211_79000301_79000410_79001591_79001757_79002119_79002273_79005526
ENSMUSG00000062232.15_5	chr3	-	3946	10	ISM	ENSMUSG00000062232.15	ENSMUST00000118100.8	6573	24	61472	15	61472	0	3prime_fragment	FALSE	canonical	3	35	junction_2	7.16645133182093	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCTTGTCTAAACTTTT	NA	False	NA	-21	True	AATAAA	-13	NA	78990812	78969837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_78971869_78973879_78974180_78976195_78976756_78977296_78977523_78981614_78981768_78986312_78986520_78988368_78988593_78989930_78989955_78990505_78990630_78990715
ENSMUSG00000062232.15_6	chr3	-	3332	6	ISM	ENSMUSG00000062232.15	ENSMUST00000118100.8	6573	24	65899	26	65899	-11	3prime_fragment	FALSE	canonical	3	35	junction_2	9.1214034007931	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAACATAAAGCCTTG	NA	False	NA	-32	True	AATAAA	-2	NA	78986385	78969848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_78971869_78973879_78974180_78976195_78976756_78977296_78977523_78981614_78981768_78986312
ENSMUSG00000062232.15_7	chr3	-	4355	11	ISM	ENSMUSG00000062232.15	ENSMUST00000118100.8	6573	24	58948	6	58948	6	3prime_fragment	FALSE	canonical	3	35	junction_2	8.6	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAACTTTTCATGAATTG	NA	False	NA	-12	True	AATAAA	-22	NA	78993336	78969828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_78971869_78973879_78974180_78976195_78976756_78977296_78977523_78981614_78981768_78986312_78986520_78988368_78988593_78989930_78989955_78990505_78990630_78990715_78990928_78993051
ENSMUSG00000062232.15_9	chr3	-	1186	1	ISM	ENSMUSG00000062232.15	ENSMUST00000118100.8	6573	24	81261	15	81261	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCTTGTCTAAACTTTT	NA	False	NA	-21	True	AATAAA	-13	NA	78971023	78969837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_78969800_78971000
ENSMUSG00000062234.15_28	chr5	-	4298	27	NIC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	73.3449033817007	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCAGTCTCTGGCTTGTA	NA	False	NA	-34	True	ATTAAA	-17	NA	108777603	108717285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
ENSMUSG00000062234.15_5	chr5	-	4633	27	NIC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	-3	0	intron_retention	FALSE	canonical	3	318	junction_9	27.9418246027381	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCAGTCTCTGGCTTGTA	NA	False	NA	-34	True	ATTAAA	-17	NA	108777608	108717285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
ENSMUSG00000062234.15_6	chr5	-	4449	28	FSM	ENSMUSG00000062234.15	ENSMUST00000046603.15	4453	28	-3	7	-3	-1	multi-exon	FALSE	canonical	3	318	junction_10	27.4864725426801	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCAGTCTCTGGCTTGT	NA	False	NA	-35	True	ATTAAA	-16	NA	108777608	108717286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
ENSMUSG00000062248.6_0	chr13	+	593	3	FSM	ENSMUSG00000062248.6	ENSMUST00000075853.6	692	3	93	6	93	-6	multi-exon	FALSE	canonical	3	3514	junction_2	7.5	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCACCATTGTTGAAATT	NA	False	NA	NA	False	AATAAA	-18	NA	51799360	51804690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_51799508_51803620_51803749_51804372
ENSMUSG00000062248.6_1	chr13	+	382	2	ISM	ENSMUSG00000062248.6	ENSMUST00000075853.6	692	3	4417	6	4417	-6	3prime_fragment	FALSE	canonical	3	3514	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCACCATTGTTGAAATT	3446	False	NA	NA	False	AATAAA	-18	NA	51803684	51804690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_51803749_51804372
ENSMUSG00000062270.15_1	chr9	-	1692	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	126	6	-8	0	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	4386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGATTGTGTGGCCGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	89996701	89973723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
ENSMUSG00000062270.15_3	chr9	-	1811	13	FSM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	65	6	9	0	multi-exon	FALSE	canonical	3	323	junction_10	2408.59367105002	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGATTGTGTGGCCGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	89996703	89973723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
ENSMUSG00000062296.9_2	chr9	+	5558	14	ISM	ENSMUSG00000062296.9	ENSMUST00000078626.8	10520	22	85	17435	85	-7002	5prime_fragment	FALSE	canonical	0	0	junction_4	1.27330348901899	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATTCATGTGTGTGTGG	NA	False	NA	NA	False	AATAAA	-16	NA	111140891	111207408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_111141320_111162765_111162893_111172162_111172314_111174462_111174582_111176536_111176621_111176855_111176995_111178343_111178476_111181141_111181313_111191325_111191581_111193012_111193190_111193742_111196617_111202013_111202214_111202475_111202614_111206845
ENSMUSG00000062296.9_3	chr9	+	7838	12	ISM	ENSMUSG00000062296.9	ENSMUST00000078626.8	10520	22	53749	1	-9332	-1	3prime_fragment	FALSE	canonical	0	0	junction_2	1.97505099840004	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTTGTCTTTTTGTTTA	9364	False	NA	NA	False	TATAAA	-18	NA	111194555	111224842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_111196617_111202013_111202214_111202475_111202614_111206845_111206990_111207877_111208035_111212141_111212231_111215438_111215543_111215639_111215773_111218225_111218372_111219014_111222065_111222825_111222925_111223325
ENSMUSG00000062296.9_4	chr9	+	4348	3	ISM	ENSMUSG00000062296.9	ENSMUST00000196945.5	5546	10	15443	3	3919	-3	3prime_fragment	FALSE	canonical	2	5	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCTGTTGTCTTTTTGTT	2610	False	NA	NA	False	TATAAA	-16	NA	111219330	111224840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_111222065_111222825_111222925_111223325
ENSMUSG00000062296.9_6	chr9	+	10702	22	FSM	ENSMUSG00000062296.9	ENSMUST00000078626.8	10520	22	-191	9	-191	-9	multi-exon	FALSE	canonical	0	0	junction_4	1.67142178807469	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTTACCTGTTGTCTT	NA	False	NA	NA	False	TATAAA	-10	NA	111140615	111224834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_111141320_111162765_111162893_111172162_111172314_111174462_111174582_111176536_111176621_111176855_111176995_111178343_111178476_111181141_111181313_111191325_111191581_111193012_111193190_111193742_111196617_111202013_111202214_111202475_111202614_111206845_111206990_111207877_111208035_111212141_111212231_111215438_111215543_111215639_111215773_111218225_111218372_111219014_111222065_111222825_111222925_111223325
ENSMUSG00000062300.15_0	chr7	-	2636	9	FSM	ENSMUSG00000062300.15	ENSMUST00000075447.14	2735	9	77	22	37	-22	multi-exon	FALSE	canonical	3	309	junction_4	306.654528745297	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAAGTCTTGTGTTTTCTG	NA	False	NA	-24	True	NA	NA	NA	19483421	19450590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19451713_19453120_19453208_19453357_19453422_19455277_19455432_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
ENSMUSG00000062300.15_15	chr7	-	1910	6	FSM	ENSMUSG00000062300.15	ENSMUST00000108450.5	1955	6	41	4	41	-4	multi-exon	FALSE	canonical	3	559	junction_1	167.41517255016	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCTCGGGGTGTTTTGT	NA	False	NA	-8	True	AATAAA	-12	NA	19483417	19458089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19458795_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
ENSMUSG00000062309.9_0	chr9	+	1397	1	FSM	ENSMUSG00000062309.9	ENSMUST00000080514.9	1423	1	19	7	19	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	786	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGCTCTGTCTTCAGT	NA	False	NA	5	True	AATAAA	-10	NA	57411327	57412724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57411300_57412700
ENSMUSG00000062312.6_0	chr11	+	4467	27	FSM	ENSMUSG00000062312.6	ENSMUST00000058295.6	5012	27	1	544	1	95	multi-exon	TRUE	canonical	3	26	junction_8	10.5841234232719	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGGGAGAGTGGGTGTTA	9038	False	NA	54	True	NA	NA	NA	98303296	98327998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98303562_98310914_98311067_98311690_98311908_98312880_98313016_98313349_98313419_98313580_98313697_98313820_98313963_98315565_98315686_98315922_98316050_98317728_98317803_98317885_98317977_98318081_98318282_98318739_98318873_98318961_98319053_98319649_98319811_98322542_98322591_98323736_98323876_98323956_98324080_98324224_98324324_98324717_98324904_98325039_98325196_98325325_98325402_98325627_98325775_98326100_98326199_98326350_98326540_98326754_98327008_98327138
ENSMUSG00000062312.6_11	chr11	+	2410	13	ISM	ENSMUSG00000062312.6	ENSMUST00000058295.6	5012	27	16468	555	1858	84	3prime_fragment	FALSE	canonical	3	40	junction_1	6.83536555146996	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAGGATACAGTGGGAG	NA	False	NA	43	True	NA	NA	NA	98319763	98327987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98319811_98322542_98322591_98323736_98323876_98323956_98324080_98324224_98324324_98324717_98324904_98325039_98325196_98325325_98325402_98325627_98325775_98326100_98326199_98326350_98326540_98326754_98327008_98327138
ENSMUSG00000062312.6_14	chr11	+	840	1	ISM	ENSMUSG00000062312.6	ENSMUST00000058295.6	5012	27	23884	523	9274	116	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAAGTCGGGGGGTGCTG	872	False	NA	75	True	NA	NA	NA	98327179	98328019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98327200_98328000
ENSMUSG00000062327.11_0	chr17	+	2634	7	NIC	ENSMUSG00000062327.11	novel	2046	8	NA	NA	-150	-16	intron_retention	FALSE	canonical	3	22	junction_4	8.29491142541954	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATATAGCACCTGGTCTT	NA	False	NA	-6	True	AATAAA	-4	NA	8653104	8661312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657447_8657622_8658741_8658872_8660424
ENSMUSG00000062327.11_1	chr17	+	2647	7	FSM	ENSMUSG00000062327.11	ENSMUST00000177118.2	761	7	-1138	-748	-150	-6	multi-exon	FALSE	canonical	3	13	junction_4	10.7496769977314	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGTCTTTGTGGATTAT	NA	False	NA	4	True	AATAAA	-14	NA	8653104	8661322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657444_8657622_8658741_8658872_8660424
ENSMUSG00000062327.11_11	chr17	+	1203	3	ISM	ENSMUSG00000062327.11	ENSMUST00000177118.2	761	7	3199	-743	3199	-11	3prime_fragment	FALSE	canonical	3	42	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCACCTGGTCTTTGTGG	NA	False	NA	-1	True	AATAAA	-9	NA	8657441	8661317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_8657622_8658741_8658872_8660424
ENSMUSG00000062327.11_2	chr17	+	2188	8	NIC	ENSMUSG00000062327.11	novel	2046	8	NA	NA	-149	-10	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	9.95295054191449	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCACCTGGTCTTTGTGGA	NA	False	NA	0	True	AATAAA	-10	NA	8653105	8661318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657444_8657622_8658741_8658872_8660424
ENSMUSG00000062327.11_4	chr17	+	2184	8	FSM	ENSMUSG00000062327.11	ENSMUST00000074667.9	2046	8	-149	11	-149	-11	multi-exon	FALSE	canonical	3	22	junction_5	7.70634511957782	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCACCTGGTCTTTGTGG	NA	False	NA	-1	True	AATAAA	-9	NA	8653105	8661317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657447_8657622_8658741_8658872_8660424
ENSMUSG00000062328.9_0	chr18	+	661	7	FSM	ENSMUSG00000062328.9	ENSMUST00000079716.6	775	7	4	110	4	-109	multi-exon	FALSE	canonical	3	6761	junction_1	2088.63605148325	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTCTTCTGGTGGTCTT	NA	False	NA	30	True	AATAAA	-30	NA	75133551	75136342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_10	chr18	+	263	2	ISM	ENSMUSG00000062328.9	ENSMUST00000079716.6	775	7	2191	110	2191	-109	3prime_fragment	FALSE	canonical	3	8261	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTCTTCTGGTGGTCTT	NA	False	NA	30	True	AATAAA	-30	NA	75135738	75136342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_75135924_75136264
ENSMUSG00000062328.9_17	chr18	+	886	7	NNC	ENSMUSG00000062328.9	novel	1326	9	NA	NA	76	-109	at_least_one_novel_splicesite	FALSE	canonical	3	266	junction_1	4216.73927803094	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTCTTCTGGTGGTCTT	NA	False	NA	30	True	AATAAA	-30	NA	75133623	75136342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_75133912_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_19	chr18	+	1247	6	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	65	-109	intron_retention	FALSE	canonical	3	8261	junction_5	1519.49465283692	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTCTTCTGGTGGTCTT	NA	False	NA	30	True	AATAAA	-30	NA	75133612	75136342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_9	chr18	+	359	3	ISM	ENSMUSG00000062328.9	ENSMUST00000079716.6	775	7	1557	110	1557	-109	3prime_fragment	FALSE	canonical	3	8261	junction_2	1140.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTCTTCTGGTGGTCTT	NA	False	NA	30	True	AATAAA	-30	NA	75135104	75136342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_75135194_75135731_75135924_75136264
ENSMUSG00000062352.16_1	chr12	-	1110	7	FSM	ENSMUSG00000062352.16	ENSMUST00000173729.8	1701	7	-30	621	-30	-10	multi-exon	FALSE	canonical	3	43	junction_6	78.2148039411693	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTTTCTGGACAAAAGA	NA	False	NA	-21	True	AATAAA	-4	NA	21336128	21320714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21335852
ENSMUSG00000062352.16_3	chr12	-	949	7	FSM	ENSMUSG00000062352.16	ENSMUST00000076260.12	1921	7	64	908	-1	-10	multi-exon	FALSE	canonical	3	216	junction_3	20.4728817924807	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTTTCTGGACAAAAGA	NA	False	NA	-21	True	AATAAA	-4	NA	21336221	21320714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21336106
ENSMUSG00000062353.7_0	chr5	+	506	1	FSM	ENSMUSG00000062353.7	ENSMUST00000118533.2	438	1	-28	-40	-28	40	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-13	NA	3286402	3286908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_3286400_3286900
ENSMUSG00000062369.3_0	chr7	-	1869	2	FSM	ENSMUSG00000062369.3	ENSMUST00000106814.3	1558	2	34	-345	34	345	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTTGTCGTCTTCCTTA	NA	False	NA	NA	False	AATAAA	-15	NA	104491776	104489118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_104490895_104491683
ENSMUSG00000062369.3_2	chr7	-	1884	2	FSM	ENSMUSG00000062369.3	ENSMUST00000076501.2	1407	2	-77	-400	22	345	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTTGTCGTCTTCCTTA	NA	False	NA	NA	False	AATAAA	-15	NA	104491788	104489118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_104490898_104491683
ENSMUSG00000062373.9_0	chr15	-	3672	7	FSM	ENSMUSG00000062373.9	ENSMUST00000072113.6	3747	7	-45	120	-45	-120	multi-exon	FALSE	canonical	3	142	junction_6	14.2087609906314	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTTTGGAATGTGGTT	NA	False	NA	-33	True	NA	NA	NA	58695424	58654237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_58656860_58658958_58659065_58661234_58661278_58662003_58662059_58666190_58666259_58669049_58669095_58694691
ENSMUSG00000062373.9_7	chr15	-	1583	1	ISM	ENSMUSG00000062373.9	ENSMUST00000072113.6	3747	7	39559	120	39559	-120	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTTTGGAATGTGGTT	NA	False	NA	-33	True	NA	NA	NA	58655820	58654237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_58654200_58655800
ENSMUSG00000062376.8_0	chr19	+	678	5	FSM	ENSMUSG00000062376.8	ENSMUST00000074912.8	2176	5	14	1484	14	-1484	multi-exon	FALSE	canonical	3	167	junction_1	5.33853912601566	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAAGGTACCTCA	9085	False	NA	NA	False	AATAAA	-21	NA	46678358	46690337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46678525_46687994_46688058_46688176_46688221_46689213_46689235_46689953
ENSMUSG00000062380.5_0	chr8	+	1729	4	FSM	ENSMUSG00000062380.5	ENSMUST00000071134.4	1868	4	129	10	-37	-10	multi-exon	FALSE	canonical	3	90	junction_1	7.03957069398096	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATACCTCTGCCTGGTATT	NA	False	NA	17	True	AATAAA	-17	NA	124138291	124148744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345
ENSMUSG00000062380.5_7	chr8	+	1247	1	ISM	ENSMUSG00000062380.5	ENSMUST00000071134.4	1868	4	9337	8	9171	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGCCTGGTATTGG	NA	False	NA	19	True	AATAAA	-19	NA	124147499	124148746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_124147500_124148700
ENSMUSG00000062382.10_7	chr13	+	917	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-11	32	-11	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	15902	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGCAAAAAAAACAAAAAAAC	7951	False	NA	NA	False	NA	NA	NA	74554516	74555433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_74554500_74555400
ENSMUSG00000062397.9_0	chr15	-	2373	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	61	1983	61	1618	multi-exon	TRUE	canonical	3	6501	junction_2	212.49836600679	5678	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACGAAACTAGTCTAATT	216	False	NA	-15	True	ATTAAA	-10	NA	37007585	36999253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
ENSMUSG00000062421.14_0	chr11	+	2218	5	FSM	ENSMUSG00000062421.14	ENSMUST00000057921.10	2242	5	17	7	17	-7	multi-exon	FALSE	canonical	3	72	junction_4	7.43303437365925	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAGACATGGTCATGTTC	NA	False	NA	24	True	AATAAA	-13	NA	103857581	103876156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_103857654_103859904_103860072_103863778_103863890_103872519_103872645_103874413
ENSMUSG00000062421.14_4	chr11	+	3090	1	NIC	ENSMUSG00000062421.14	novel	2242	5	NA	NA	2650	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTAGACATGGTCATGT	NA	False	NA	22	True	AATAAA	-11	NA	103873064	103876154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_103873100_103876200
ENSMUSG00000062421.14_5	chr11	+	2077	4	ISM	ENSMUSG00000062421.14	ENSMUST00000063347.12	2660	5	2276	8	2276	-8	3prime_fragment	FALSE	canonical	3	72	junction_3	5.79271573232759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTAGACATGGTCATGTT	NA	False	NA	23	True	AATAAA	-12	NA	103859972	103876155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_103860072_103863778_103863890_103872519_103872645_103874413
ENSMUSG00000062444.16_0	chr7	-	3610	26	FSM	ENSMUSG00000062444.16	ENSMUST00000082090.15	3806	26	193	3	-26	-3	multi-exon	FALSE	canonical	3	16	junction_25	15.5434873821804	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTCTGGCTCACCTTTCC	7833	False	NA	-2	True	AATAAA	-14	NA	81143480	81110149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781_81134858_81143255
ENSMUSG00000062444.16_1	chr7	-	3656	26	NIC	ENSMUSG00000062444.16	novel	3806	26	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	36	junction_25	13.1209755734854	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTCTGGCTCACCTTTCC	NA	False	NA	-2	True	AATAAA	-14	NA	81139556	81110149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781_81134858_81139285
ENSMUSG00000062444.16_3	chr7	-	2578	19	ISM	ENSMUSG00000062444.16	ENSMUST00000238711.2	3230	25	16599	-231	1330	-3	3prime_fragment	FALSE	canonical	3	56	junction_15	11.3920049937567	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTCTGGCTCACCTTTCC	NA	False	NA	-2	True	AATAAA	-14	NA	81126828	81110149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693
ENSMUSG00000062444.16_5	chr7	-	3373	25	ISM	ENSMUSG00000062444.16	ENSMUST00000082090.15	3806	26	8828	3	4713	-3	3prime_fragment	FALSE	canonical	3	56	junction_15	11.3907095428199	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTCTGGCTCACCTTTCC	NA	False	NA	-2	True	AATAAA	-14	NA	81134845	81110149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781
ENSMUSG00000062444.16_9	chr7	-	3448	23	ISM	ENSMUSG00000062444.16	ENSMUST00000082090.15	3806	26	9190	3	5075	-3	3prime_fragment	FALSE	canonical	3	56	junction_15	11.3023803533987	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTCTGGCTCACCTTTCC	NA	False	NA	-2	True	AATAAA	-14	NA	81134483	81110149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173
ENSMUSG00000062456.5_0	chr19	-	632	1	FSM	ENSMUSG00000062456.5	ENSMUST00000078034.5	714	1	60	22	60	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	32443918	32443286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_32443300_32443900
ENSMUSG00000062510.13_0	chr1	+	2966	6	FSM	ENSMUSG00000062510.13	ENSMUST00000078259.8	4879	6	-6	1919	1	-1919	multi-exon	FALSE	canonical	3	202	junction_5	16.7164589551735	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGCATTTTTACTGTAT	NA	False	NA	13	True	AATAAA	-17	NA	190795221	190816752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367
ENSMUSG00000062510.13_1	chr1	+	2913	7	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	1	-1919	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	82.1517904045108	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGCATTTTTACTGTAT	NA	False	NA	13	True	AATAAA	-17	NA	190795221	190816752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367_190815835_190815887
ENSMUSG00000062510.13_28	chr1	+	1820	1	ISM	ENSMUSG00000062510.13	ENSMUST00000078259.8	4879	6	19706	1918	19706	-1918	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCATTTTTACTGTATT	NA	False	NA	14	True	AATAAA	-18	NA	190814933	190816753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_190814900_190816800
ENSMUSG00000062518.8_1	chr4	-	3033	5	NNC	ENSMUSG00000062518.8	novel	2885	4	NA	NA	-54	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	103.832497321407	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147787064	147757964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_147760511_147762673_147762801_147766723_147766828_147784759_147784854_147786902
ENSMUSG00000062518.8_4	chr4	-	1138	1	ISM	ENSMUSG00000062518.8	ENSMUST00000117638.2	2885	4	27908	6	27908	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147759102	147757964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_147758000_147759100
ENSMUSG00000062519.14_0	chr6	+	2657	6	FSM	ENSMUSG00000062519.14	ENSMUST00000079881.11	2906	6	60	189	29	-189	multi-exon	FALSE	canonical	3	16	junction_3	4.17612260356422	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACGAACTCTGACTTTGA	NA	False	NA	NA	False	AATACA	-19	NA	47812657	47844433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_47812855_47817185_47817582_47835862_47835990_47836352_47836467_47840037_47840152_47842724
ENSMUSG00000062519.14_1	chr6	+	2519	5	NIC	ENSMUSG00000062519.14	novel	2906	6	NA	NA	97	-622	intron_retention	FALSE	canonical	3	18	junction_2	3.89711431702997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTAGAGACATGCTTGTG	NA	False	NA	7	True	CATAAA	-20	NA	47812725	47844000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_47812855_47817185_47817582_47835862_47836467_47840037_47840152_47842724
ENSMUSG00000062519.14_2	chr6	+	2049	1	ISM	ENSMUSG00000062519.14	ENSMUST00000114598.3	8328	5	32015	3779	32015	2070	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTCTTTGCCATCTGGTG	8813	False	NA	NA	False	AATAAA	-17	NA	47844643	47846692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_47844600_47846700
ENSMUSG00000062519.14_3	chr6	+	1373	1	ISM	ENSMUSG00000062519.14	ENSMUST00000114598.3	8328	5	34817	1653	34817	-1653	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTATTTTTGTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	47847445	47848818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_47847400_47848800
ENSMUSG00000062519.14_4	chr6	+	2277	5	FSM	ENSMUSG00000062519.14	ENSMUST00000114598.3	8328	5	19	6032	19	-183	multi-exon	FALSE	canonical	1	1	junction_1	10.0343161201947	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTGACTTTGATAGCTT	NA	False	NA	NA	False	AATACA	-25	NA	47812647	47844439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_47812855_47835862_47835990_47836352_47836467_47840037_47840152_47842724
ENSMUSG00000062526.5_10	chr18	-	3263	9	NIC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	4	-6	intron_retention	FALSE	canonical	3	29	junction_3	9.69455388349562	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGGAGTTTGGATCTT	NA	False	NA	-5	True	GATAAA	-17	NA	67378734	67358119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378452
ENSMUSG00000062526.5_14	chr18	-	2281	11	NNC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	41	-6	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_4	11.9348229982686	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGGAGTTTGGATCTT	NA	False	NA	-5	True	GATAAA	-17	NA	67378697	67358119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360947_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378452
ENSMUSG00000062526.5_15	chr18	-	3130	9	FSM	ENSMUSG00000062526.5	ENSMUST00000236244.2	2511	9	23	-642	23	-6	multi-exon	FALSE	canonical	3	18	junction_8	12.4899959967968	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGGAGTTTGGATCTT	NA	False	NA	-5	True	GATAAA	-17	NA	67378325	67358119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378176
ENSMUSG00000062526.5_6	chr18	-	2190	10	NIC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	26	-6	combination_of_known_splicesites	FALSE	canonical	2	2	junction_4	15.4472419528736	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGGAGTTTGGATCTT	NA	False	NA	-5	True	GATAAA	-17	NA	67378712	67358119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360950_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378452
ENSMUSG00000062526.5_7	chr18	-	2275	11	FSM	ENSMUSG00000062526.5	ENSMUST00000073054.5	2494	11	213	6	50	-6	multi-exon	FALSE	canonical	3	17	junction_4	12.1016527796826	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGGAGTTTGGATCTT	NA	False	NA	-5	True	GATAAA	-17	NA	67378688	67358119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360950_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378452
ENSMUSG00000062542.12_12	chr7	+	3473	6	NIC	ENSMUSG00000062542.12	novel	3817	7	NA	NA	-15	-4	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	62.0064512772663	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATACAGTCGTTGTCTC	NA	False	NA	NA	False	AGTAAA	-12	NA	106969981	107147856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_106970355_107035481_107036029_107101299_107101421_107103368_107103541_107105695_107105826_107145726
ENSMUSG00000062542.12_2	chr7	+	3844	9	Fusion	ENSMUSG00000062542.12_ENSMUSG00000057215.7	novel	1294	6	NA	NA	-11	-4	multi-exon	FALSE	canonical	3	15	junction_3	64.1374256967022	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATACAGTCGTTGTCTC	NA	False	NA	NA	False	AGTAAA	-12	NA	106842217	107147856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_+_106842336_106883988_106884145_106884819_106884938_107024253_107024606_107035481_107036029_107101299_107101421_107103368_107103541_107105695_107105826_107145726
ENSMUSG00000062542.12_22	chr7	+	2953	5	ISM	ENSMUSG00000062542.12	ENSMUST00000073459.12	3817	7	65632	7	65632	-4	3prime_fragment	FALSE	canonical	3	155	junction_4	8.8423695919137	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATACAGTCGTTGTCTC	NA	False	NA	NA	False	AGTAAA	-12	NA	107035628	107147856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_107036029_107101299_107101421_107103368_107103541_107105695_107105826_107145726
ENSMUSG00000062542.12_27	chr7	+	1397	1	ISM	ENSMUSG00000062542.12	ENSMUST00000130414.8	3267	6	176463	4	43157	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATACAGTCGTTGTCTC	NA	False	NA	NA	False	AGTAAA	-12	NA	107146459	107147856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_107146500_107147900
ENSMUSG00000062542.12_6	chr7	+	3823	7	FSM	ENSMUSG00000062542.12	ENSMUST00000073459.12	3817	7	-13	7	-13	-4	multi-exon	FALSE	canonical	3	144	junction_2	10.4628974104797	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATACAGTCGTTGTCTC	NA	False	NA	NA	False	AGTAAA	-12	NA	106969983	107147856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_106970355_107024253_107024606_107035481_107036029_107101299_107101421_107103368_107103541_107105695_107105826_107145726
ENSMUSG00000062542.12_8	chr7	+	3815	7	NIC	ENSMUSG00000062542.12	novel	3817	7	NA	NA	-10	-4	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	53.2679286458768	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATACAGTCGTTGTCTC	NA	False	NA	NA	False	AGTAAA	-12	NA	106969986	107147856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_106970355_107024253_107024606_107035481_107036029_107101299_107101421_107103368_107103541_107105700_107105826_107145726
ENSMUSG00000062563.16_0	chr12	-	1459	4	NIC	ENSMUSG00000062563.16	novel	1856	5	NA	NA	0	4	intron_retention	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGTTAAAAATGTTAATGT	NA	False	NA	NA	False	ATTAAA	-17	NA	24730907	24715842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_24716827_24717088_24717232_24719696_24719750_24730628
ENSMUSG00000062580.10_2	chr1	-	899	6	FSM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	42	6339	42	264	multi-exon	FALSE	canonical	3	2331	junction_5	176.235070289656	830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAACCTTTCCTTTGAAA	NA	False	NA	-23	True	AATAAA	-12	NA	135241474	135229289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
ENSMUSG00000062580.10_3	chr1	-	848	5	ISM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	3907	6348	-32	255	3prime_fragment	FALSE	canonical	3	2684	junction_1	61.2632638699572	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTGGGACTTAACCTTT	NA	False	NA	-32	True	AATAAA	-3	NA	135237609	135229298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508
ENSMUSG00000062582.7_0	chr12	+	165	1	FSM	ENSMUSG00000062582.7	ENSMUST00000076166.7	345	1	226	-46	226	46	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGAAAAAAAAAAGAGGTCT	NA	False	NA	NA	False	AATAAA	-20	NA	99013714	99013879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_99013700_99013900
ENSMUSG00000062590.14_0	chr1	+	2184	21	FSM	ENSMUSG00000062590.14	ENSMUST00000131412.8	2160	21	-26	2	3	-2	multi-exon	FALSE	canonical	3	78	junction_14	12.2982722363753	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAGCATTCTCTTTATT	NA	False	NA	6	True	AATAAA	-11	NA	86082510	86180209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998
ENSMUSG00000062590.14_1	chr1	+	2491	22	FSM	ENSMUSG00000062590.14	ENSMUST00000135973.8	4696	22	12	2193	-2	-2193	multi-exon	FALSE	canonical	3	60	junction_21	14.7732675162462	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGCTCTCTGGATTAGC	NA	False	NA	11	True	AATACA	-22	NA	86082517	86185356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998_86180115_86184947
ENSMUSG00000062590.14_3	chr1	+	4315	19	FSM	ENSMUSG00000062590.14	ENSMUST00000155168.8	2435	19	2	-1882	0	1882	multi-exon	FALSE	canonical	3	78	junction_14	12.3513382090993	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86082507	86143271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771
ENSMUSG00000062590.14_6	chr1	+	2373	21	NIC	ENSMUSG00000062590.14	novel	4696	22	NA	NA	3	-2202	combination_of_known_junctions	FALSE	canonical	2	5	junction_20	24.1024376360566	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGATCTCAGTTTGCTCTC	NA	False	NA	2	True	AATACA	-13	NA	86082510	86185347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86184947
ENSMUSG00000062591.6_0	chr17	-	2044	4	FSM	ENSMUSG00000062591.6	ENSMUST00000071135.6	2228	4	184	0	184	0	multi-exon	TRUE	canonical	0	0	junction_2	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTTTCTGTTTGATTTA	NA	False	NA	NA	False	AATAAA	-17	NA	57394598	57387065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57388748_57392991_57393103_57393230_57393340_57394456
ENSMUSG00000062604.12_1	chr5	-	3549	16	NNC	ENSMUSG00000062604.12	novel	4259	15	NA	NA	-7	-691	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_8	55.3628836756982	85	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATTGCCTTGCTTATTA	NA	False	NA	-6	True	ATTAAA	-21	NA	23880972	23711140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732921_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
ENSMUSG00000062604.12_3	chr5	-	2571	1	ISM	ENSMUSG00000062604.12	ENSMUST00000088392.9	6491	15	109405	1295	34989	893	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAAGTCACTACCAAATC	743	False	NA	-21	True	ATTAAA	-13	NA	23712127	23709556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_23709600_23712100
ENSMUSG00000062604.12_4	chr5	-	3576	16	NIC	ENSMUSG00000062604.12	novel	4259	15	NA	NA	-7	-691	combination_of_known_junctions	FALSE	canonical	3	183	junction_8	31.7487357578569	295	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATTGCCTTGCTTATTA	NA	False	NA	-6	True	ATTAAA	-21	NA	23880972	23711140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
ENSMUSG00000062604.12_5	chr5	-	3640	17	NIC	ENSMUSG00000062604.12	novel	6491	15	NA	NA	-7	-691	combination_of_known_splicesites	FALSE	canonical	3	29	junction_15	81.8305938738685	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATTGCCTTGCTTATTA	NA	False	NA	-6	True	ATTAAA	-21	NA	23880972	23711140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23821324_23821389_23880717_23880773_23880855
ENSMUSG00000062611.5_0	chr14	-	842	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	-4	-46	-4	46	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCGTTAAAAAAAAAAAAAT	NA	False	NA	NA	False	AATAAA	-15	NA	88361248	88360406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_88360400_88361200
ENSMUSG00000062619.7_0	chr17	+	578	1	FSM	ENSMUSG00000062619.7	ENSMUST00000071430.7	762	1	181	3	181	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTCTAACTTGGCAGTC	NA	False	NA	7	True	GATAAA	-15	NA	47083741	47084319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47083700_47084300
ENSMUSG00000062627.10_0	chr4	-	5180	20	FSM	ENSMUSG00000062627.10	ENSMUST00000075872.4	7420	20	23	2217	1	-2194	multi-exon	FALSE	canonical	1	5	junction_15	17.5783170388094	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACCCTTCAAAATTCTG	NA	False	NA	NA	False	AATAAA	-20	NA	94867314	94832493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_94835361_94836338_94836397_94836565_94836672_94839162_94839296_94840410_94840600_94841099_94841175_94841734_94841786_94842108_94842164_94845286_94845376_94847149_94847228_94848564_94848669_94849939_94850071_94853365_94854109_94856106_94856206_94857216_94857296_94858748_94858773_94858860_94858939_94861154_94861226_94863453_94863530_94867240
ENSMUSG00000062627.10_1	chr4	-	2910	1	ISM	ENSMUSG00000062627.10	ENSMUST00000075872.4	7420	20	34042	109	8330	-86	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTTAAGCTTTGACGT	NA	False	NA	-109	True	ATTAAA	-6	NA	94833295	94830385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_94830400_94833300
ENSMUSG00000062627.10_6	chr4	-	5320	5	ISM	ENSMUSG00000062627.10	ENSMUST00000124820.8	5677	7	1136	117	1136	-117	3prime_fragment	FALSE	canonical	3	42	junction_4	9.51314879522022	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATATCTACTTGTGGCAT	NA	False	NA	NA	False	TATAAA	-9	NA	94840489	94830416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_94835361_94836338_94836397_94836565_94836672_94839162_94839296_94840410
ENSMUSG00000062638.12_0	chr17	+	1907	4	ISM	ENSMUSG00000062638.12	ENSMUST00000080254.7	2113	10	5102	-1058	4348	1058	3prime_fragment	FALSE	canonical	2	4	junction_1	3.29983164553722	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATAAGGTTTGTTGTTG	2761	False	NA	NA	False	AGTAAA	-18	NA	34601207	34606060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34601242_34601435_34601463_34603334_34603362_34604241
ENSMUSG00000062646.13_0	chr2	+	2735	5	FSM	ENSMUSG00000062646.13	ENSMUST00000154574.8	3099	5	307	57	1	-57	multi-exon	FALSE	canonical	3	9	junction_3	3.77491721763537	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTATAAAGATTTGGAAAT	NA	False	NA	NA	False	ATTAAA	-8	NA	120234683	120254083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120235541_120236746_120236810_120241915_120242025_120249838_120249967_120252505
ENSMUSG00000062646.13_17	chr2	+	3422	14	ISM	ENSMUSG00000062646.13	ENSMUST00000135074.2	4780	24	28886	9	10153	-9	3prime_fragment	FALSE	canonical	0	0	junction_6	3.06729262113491	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCTGCTTTTGGTCATG	NA	False	NA	1	True	NA	NA	NA	120264134	120292172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_120264339_120265743_120265871_120267102_120267183_120269780_120269925_120271984_120272082_120274618_120274721_120276779_120277024_120278868_120278934_120281301_120281379_120283073_120283149_120286473_120286588_120287688_120287802_120288523_120288628_120290296
ENSMUSG00000062646.13_3	chr2	+	3564	4	FSM	ENSMUSG00000062646.13	ENSMUST00000143409.8	1477	4	-150	-1937	-13	-1895	multi-exon	FALSE	canonical	2	5	junction_3	5.43650214343336	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGCTTTGAGTGATAGT	NA	False	NA	NA	False	NA	NA	NA	120234668	120248069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120235541_120236746_120236810_120241915_120242025_120245549
ENSMUSG00000062646.13_5	chr2	+	4512	24	FSM	ENSMUSG00000062646.13	ENSMUST00000135074.2	4780	24	-525	793	19	41	multi-exon	FALSE	canonical	0	0	junction_16	3.61680597271051	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTACTGCCTCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	120234723	120291388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120235541_120236746_120236810_120241915_120242025_120249838_120249967_120252505_120252686_120254179_120254226_120258210_120258278_120259281_120259379_120261035_120261217_120261421_120261576_120264102_120264339_120265743_120265871_120267102_120267183_120269780_120269925_120271984_120272082_120274618_120274721_120276779_120277024_120278868_120278934_120281301_120281379_120283073_120283149_120286473_120286588_120287688_120287802_120288523_120288628_120290296
ENSMUSG00000062647.17_0	chr2	+	858	8	FSM	ENSMUSG00000062647.17	ENSMUST00000102898.5	914	8	43	13	-10	-13	multi-exon	FALSE	canonical	3	2861	junction_1	795.089880684786	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTATCTTGACTGCCTT	NA	False	NA	-7	True	AATATA	-6	NA	26800818	26803317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUSG00000062647.17_2	chr2	+	835	7	ISM	ENSMUSG00000062647.17	ENSMUST00000102898.5	914	8	241	13	-1	-13	3prime_fragment	FALSE	canonical	3	4686	junction_6	264.743114483959	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTATCTTGACTGCCTT	NA	False	NA	-7	True	AATATA	-6	NA	26801016	26803317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUSG00000062647.17_7	chr2	+	2136	1	FSM	ENSMUSG00000065258.3	ENSMUST00000083324.3	74	1	-91	-1971	-91	1971	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTATCTTGACTGCCTT	NA	False	NA	-7	True	AATATA	-6	NA	26801181	26803317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_26801200_26803300
ENSMUSG00000062661.7_0	chr2	+	4124	8	FSM	ENSMUSG00000062661.7	ENSMUST00000000199.8	4653	8	6	523	6	-523	multi-exon	FALSE	canonical	3	33	junction_6	7.16852530873965	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAACAGTTGGTCCCATC	NA	False	NA	1	True	AATAAA	-41	NA	31135840	31185478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31136255_31160623_31160649_31170677_31170817_31172320_31172400_31174158_31174248_31174673_31174752_31177298_31177416_31182295
ENSMUSG00000062661.7_7	chr2	+	1625	1	ISM	ENSMUSG00000062661.7	ENSMUST00000000199.8	4653	8	48019	523	47676	-523	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAACAGTTGGTCCCATC	NA	False	NA	1	True	AATAAA	-41	NA	31183853	31185478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_31183900_31185500
ENSMUSG00000062683.12_0	chr15	-	644	5	FSM	ENSMUSG00000062683.12	ENSMUST00000185641.7	731	5	80	7	80	-7	multi-exon	FALSE	canonical	3	3206	junction_4	667.870870752723	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGATGTTTCTTGAGTC	3981	False	NA	-18	True	AATAAA	-10	NA	102579482	102571305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145_102576215_102579452
ENSMUSG00000062683.12_1	chr15	-	616	4	FSM	ENSMUSG00000062683.12	ENSMUST00000075630.10	441	4	-32	-143	-32	-7	multi-exon	FALSE	canonical	3	4680	junction_1	53.4935094712953	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGATGTTTCTTGAGTC	7247	False	NA	-18	True	AATAAA	-10	NA	102576216	102571305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145
ENSMUSG00000062691.11_1	chr17	+	593	5	FSM	ENSMUSG00000062691.11	ENSMUST00000180077.7	602	5	3	6	3	-6	multi-exon	FALSE	canonical	3	686	junction_1	395.694563394546	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATAACGTGTGTGGGT	NA	False	NA	NA	False	AATAAA	-16	NA	79223931	79227729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_79223955_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUSG00000062691.11_3	chr17	+	714	5	FSM	ENSMUSG00000062691.11	ENSMUST00000063817.7	753	5	33	6	33	-6	multi-exon	FALSE	canonical	3	300	junction_1	562.646592009585	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATAACGTGTGTGGGT	NA	False	NA	NA	False	AATAAA	-16	NA	79223978	79227729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_79224123_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUSG00000062691.11_9	chr17	+	572	4	ISM	ENSMUSG00000062691.11	ENSMUST00000063817.7	753	5	1838	6	1655	-6	3prime_fragment	FALSE	canonical	3	1564	junction_2	26.0298973404728	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATAACGTGTGTGGGT	NA	False	NA	NA	False	AATAAA	-16	NA	79225783	79227729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUSG00000062727.5_0	chr13	+	479	1	FSM	ENSMUSG00000062727.5	ENSMUST00000110455.4	476	1	-30	27	-30	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCACCAGTATTAGAGCT	NA	False	NA	12	True	NA	NA	NA	22220009	22220488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_22220000_22220500
ENSMUSG00000062729.13_14	chr1	-	1791	13	FSM	ENSMUSG00000062729.13	ENSMUST00000073120.11	1821	13	30	0	30	0	multi-exon	FALSE	canonical	3	37	junction_8	32.2076595444831	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5219	False	NA	-15	True	AGTAAA	-16	NA	171108730	171104564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107149_171107442_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
ENSMUSG00000062729.13_15	chr1	-	2344	10	NIC	ENSMUSG00000062729.13	novel	1821	13	NA	NA	-26	0	intron_retention	FALSE	canonical	3	53	junction_6	23.0656604361988	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5230	False	NA	-15	True	AGTAAA	-16	NA	171108719	171104564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171108097_171108247_171108343_171108446
ENSMUSG00000062729.13_25	chr1	-	2258	7	ISM	ENSMUSG00000062729.13	ENSMUST00000152689.8	3043	11	1310	0	-49	0	3prime_fragment	TRUE	canonical	3	93	junction_6	16.8399326997863	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	6499	False	NA	-15	True	AGTAAA	-16	NA	171107450	171104564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171106888_171107003
ENSMUSG00000062729.13_33	chr1	-	3180	10	NIC	ENSMUSG00000062729.13	novel	3043	11	NA	NA	1	0	intron_retention	FALSE	canonical	3	42	junction_7	25.6471787488951	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5190	False	NA	-15	True	AGTAAA	-16	NA	171108759	171104564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171106888_171107003_171107830_171107961_171108097_171108247_171108343_171108446
ENSMUSG00000062729.13_7	chr1	-	3286	9	NIC	ENSMUSG00000062729.13	novel	3043	11	NA	NA	27	0	intron_retention	FALSE	canonical	3	87	junction_7	17.1386806668425	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5216	False	NA	-15	True	AGTAAA	-16	NA	171108733	171104564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171106888_171107003_171108097_171108247_171108343_171108446
ENSMUSG00000062743.10_0	chr17	+	2925	4	FSM	ENSMUSG00000062743.10	ENSMUST00000162659.2	2917	4	-9	1	-9	-1	multi-exon	FALSE	canonical	1	3	junction_1	0.471404520791032	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCGTGGTTTTGTTTTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	21604000	21619526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21604283_21612722_21612814_21613437_21613565_21617101
ENSMUSG00000062743.10_1	chr17	+	2917	4	FSM	ENSMUSG00000062743.10	ENSMUST00000056107.11	2909	4	-8	0	-8	0	multi-exon	FALSE	canonical	0	0	junction_1	1.88561808316413	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCCGTGGTTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	21604001	21619524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21604283_21612727_21612814_21613437_21613565_21617101
ENSMUSG00000062753.15_0	chr17	-	1508	4	ISM	ENSMUSG00000062753.15	ENSMUST00000145183.3	992	5	-19	-3	-10	3	intron_retention	FALSE	canonical	3	245	junction_2	9.7410927974683	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGGGTGGACTCC	NA	False	NA	52	True	AATAAA	-21	NA	27784660	27782739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535
ENSMUSG00000062753.15_1	chr17	-	614	5	FSM	ENSMUSG00000062753.15	ENSMUST00000154473.9	862	5	50	198	2	0	multi-exon	FALSE	canonical	3	219	junction_4	17.0934929139717	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCCTCCTTGGGTGG	NA	False	NA	47	True	AATAAA	-16	NA	27784680	27782744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535_27783725_27784633
ENSMUSG00000062753.15_2	chr17	-	555	5	FSM	ENSMUSG00000062753.15	ENSMUST00000231753.2	563	5	10	-2	1	0	multi-exon	FALSE	canonical	2	17	junction_3	99.6092365195116	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCCTCCTTGGGTGG	NA	False	NA	47	True	AATAAA	-16	NA	27784681	27782744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783595_27783725_27784633
ENSMUSG00000062753.15_3	chr17	-	1791	2	ISM	ENSMUSG00000062753.15	ENSMUST00000080190.9	677	4	15	2	15	0	intron_retention	FALSE	canonical	3	267	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCCTCCTTGGGTGG	NA	False	NA	47	True	AATAAA	-16	NA	27784667	27782744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27782991_27783122
ENSMUSG00000062753.15_5	chr17	-	1461	1	NIC	ENSMUSG00000062753.15	novel	862	5	NA	NA	-108	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCCTCCTTGGGTGG	NA	False	NA	47	True	AATAAA	-16	NA	27784205	27782744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_27782700_27784200
ENSMUSG00000062753.15_7	chr17	-	581	4	FSM	ENSMUSG00000062753.15	ENSMUST00000231948.2	608	4	27	0	9	0	multi-exon	FALSE	canonical	3	8	junction_2	112.499876543142	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCCTCCTTGGGTGG	NA	False	NA	47	True	AATAAA	-16	NA	27784673	27782744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27782991_27783122_27783229_27783535_27783725_27784633
ENSMUSG00000062758.7_0	chr7	-	611	1	FSM	ENSMUSG00000062758.7	ENSMUST00000085365.6	801	1	226	-36	226	36	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTAAAAAAAAAATCGC	NA	False	NA	NA	False	CATAAA	-10	NA	131216491	131215880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_131215900_131216500
ENSMUSG00000062761.8_2	chr5	+	3200	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_1	77.4128093764563	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAAGTCTCTGGTCCTCCT	7181	False	NA	11	True	AATAAA	-12	NA	31609813	31639093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31609922_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ENSMUSG00000062761.8_3	chr5	+	3243	14	FSM	ENSMUSG00000062761.8	ENSMUST00000076264.8	3299	14	51	5	6	0	multi-exon	FALSE	canonical	3	217	junction_1	41.4283440690995	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAAGTCTCTGGTCCTCCT	7197	False	NA	11	True	AATAAA	-12	NA	31609829	31639093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31609922_31610498_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ENSMUSG00000062761.8_5	chr5	+	3176	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	92.8146300728261	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAAGTCTCTGGTCCTCCT	7199	False	NA	11	True	AATAAA	-12	NA	31609831	31639093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31609922_31622795_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ENSMUSG00000062761.8_9	chr5	+	3798	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	-8	0	intron_retention	FALSE	canonical	3	284	junction_12	29.0684059112677	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAAGTCTCTGGTCCTCCT	7219	False	NA	11	True	AATAAA	-12	NA	31609851	31639093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ENSMUSG00000062762.18_0	chr9	-	2167	11	FSM	ENSMUSG00000062762.18	ENSMUST00000238932.2	2220	11	53	0	21	0	multi-exon	FALSE	canonical	3	488	junction_2	34.4551882885582	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36708636	36690454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708508
ENSMUSG00000062762.18_11	chr9	-	2373	11	FSM	ENSMUSG00000062762.18	ENSMUST00000163192.11	2309	11	-64	0	24	0	multi-exon	TRUE	canonical	3	35	junction_10	155.462664328127	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36708633	36690454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708299
ENSMUSG00000062773.7_0	chr7	-	1048	6	FSM	ENSMUSG00000062773.7	ENSMUST00000078001.7	1059	6	8	3	8	-3	multi-exon	FALSE	canonical	2	2	junction_5	1.72046505340853	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGCGCGTGCATGC	1010	False	NA	NA	False	AATAAA	-18	NA	24371467	24367434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24367828_24367933_24368066_24369138_24369325_24369757_24369899_24370003_24370109_24371376
ENSMUSG00000062785.15_1	chr7	+	2892	6	NIC	ENSMUSG00000062785.15	novel	2960	6	NA	NA	27	87	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	2.78567765543682	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAAAAAGCA	4140	False	NA	NA	False	NA	NA	NA	44240336	44251652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44241183_44244584_44245693_44247804_44248000_44248229_44248358_44250097_44250353_44251292
ENSMUSG00000062785.15_2	chr7	+	2713	6	NIC	ENSMUSG00000062785.15	novel	2731	5	NA	NA	12	88	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	3.03315017762062	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGCAA	4125	False	NA	NA	False	NA	NA	NA	44240321	44251653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44241183_44244584_44245693_44247804_44248000_44248229_44248358_44250292_44250353_44251292
ENSMUSG00000062785.15_8	chr7	+	1032	1	ISM	ENSMUSG00000062785.15	ENSMUST00000107907.10	5281	4	13055	4	7626	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTGGCTTTTCTCATTT	3075	False	NA	NA	False	AATAAA	-17	NA	44253142	44254174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_44253100_44254200
ENSMUSG00000062794.9_0	chr9	-	1736	1	ISM	ENSMUSG00000062794.9	ENSMUST00000086281.5	3574	5	10698	32	10698	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAACAA	NA	False	NA	NA	False	NA	NA	NA	22160493	22158757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_22158800_22160500
ENSMUSG00000062794.9_1	chr9	-	3569	5	FSM	ENSMUSG00000062794.9	ENSMUST00000086281.5	3574	5	-30	35	-30	-35	multi-exon	FALSE	canonical	3	33	junction_1	12.747548783982	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	22171221	22158760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_22161837_22162823_22162928_22165150_22165244_22169340_22169468_22171052
ENSMUSG00000062794.9_3	chr9	-	3572	5	NNC	ENSMUSG00000062794.9	novel	3574	5	NA	NA	-38	-36	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	23.0149407994025	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	22171229	22158761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_22161833_22162823_22162928_22165150_22165244_22169340_22169468_22171052
ENSMUSG00000062794.9_4	chr9	-	3231	3	ISM	ENSMUSG00000062794.9	ENSMUST00000086281.5	3574	5	5989	36	5989	-36	3prime_fragment	FALSE	canonical	3	33	junction_1	10	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	22165202	22158761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_22161837_22162823_22162928_22165150
ENSMUSG00000062797.15_0	chr7	-	1009	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	52	1163	11	-4	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATTACATGTGTAACCTT	NA	False	NA	10	True	AATAAA	-29	NA	89590360	89567899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
ENSMUSG00000062797.15_1	chr7	-	778	4	FSM	ENSMUSG00000062797.15	ENSMUST00000208357.2	806	4	43	-15	7	-1	multi-exon	FALSE	canonical	3	430	junction_3	356.664485974642	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACATGTGTAACCTTTTC	NA	False	NA	13	True	AATAAA	-32	NA	89590364	89567896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89590176
ENSMUSG00000062797.15_3	chr7	-	1165	6	FSM	ENSMUSG00000062797.15	ENSMUST00000078918.10	1053	6	-98	-14	-1	-1	multi-exon	FALSE	canonical	3	19	junction_4	509.123403508422	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACATGTGTAACCTTTTC	NA	False	NA	13	True	AATAAA	-32	NA	89590372	89567896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89579527_89579669_89584934_89585173_89590176
ENSMUSG00000062822.9_1	chr13	+	973	4	ISM	ENSMUSG00000062822.9	ENSMUST00000225726.2	2795	13	1	16357	1	-65	5prime_fragment	FALSE	canonical	3	76	junction_1	22.7596133534821	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAGTCTGCAGATGTGG	NA	False	NA	4	True	AATAAA	-16	NA	119599312	119606296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050
ENSMUSG00000062822.9_5	chr13	+	3424	12	NIC	ENSMUSG00000062822.9	novel	2795	13	NA	NA	0	-1	intron_retention	FALSE	canonical	3	76	junction_1	21.4818778131747	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTATTTCATTTCTTAC	NA	False	NA	8	True	AATAAA	-18	NA	119599319	119622652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ENSMUSG00000062822.9_6	chr13	+	2530	13	FSM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	34	1	18	-1	multi-exon	FALSE	canonical	3	76	junction_1	23.5189049253763	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTATTTCATTTCTTAC	NA	False	NA	8	True	AATAAA	-18	NA	119599337	119622652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ENSMUSG00000062822.9_7	chr13	+	3839	3	NIC	ENSMUSG00000062822.9	novel	3406	14	NA	NA	18	-65	intron_retention	FALSE	canonical	3	115	junction_1	7.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAGTCTGCAGATGTGG	NA	False	NA	4	True	AATAAA	-16	NA	119599337	119606296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_119602841_119603402_119603493_119606050
ENSMUSG00000062822.9_9	chr13	+	2487	13	NIC	ENSMUSG00000062822.9	novel	2627	14	NA	NA	-2	-1	combination_of_known_junctions	TRUE	canonical	3	42	junction_1	29.2546292633035	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTATTTCATTTCTTAC	NA	False	NA	8	True	AATAAA	-18	NA	119599317	119622652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ENSMUSG00000062825.16_0	chr11	-	1896	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	50	6	-3	-5	multi-exon	TRUE	canonical	3	5636	junction_4	454.292680988809	7010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACCATTGTTTTTCTG	NA	False	NA	-27	True	AATAAA	-12	NA	120239318	120236521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
ENSMUSG00000062825.16_3	chr11	-	1273	3	ISM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	928	5	-186	-5	3prime_fragment	FALSE	canonical	3	6581	junction_1	107	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACCATTGTTTTTCTG	NA	False	NA	-27	True	AATAAA	-12	NA	120237989	120236521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120237360_120237462_120237645_120237736
ENSMUSG00000062825.16_5	chr11	-	1637	4	ISM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	278	5	278	-5	3prime_fragment	FALSE	canonical	3	6267	junction_3	216.839930722078	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACCATTGTTTTTCTG	NA	False	NA	-27	True	AATAAA	-12	NA	120238639	120236521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461
ENSMUSG00000062859.16_1	chr17	-	1914	9	ISM	ENSMUSG00000062859.16	ENSMUST00000042692.13	1989	10	282	7	218	-1	3prime_fragment	FALSE	canonical	3	28	junction_6	7.37817728168685	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCAGACGGCCATTCTTCT	NA	False	NA	-6	True	AATAAA	-13	NA	28299279	28285725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298895
ENSMUSG00000062859.16_10	chr17	-	2284	7	FSM	ENSMUSG00000062859.16	ENSMUST00000233961.2	1507	7	-113	-664	-113	658	multi-exon	FALSE	canonical	3	28	junction_6	8.31497978884428	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGGCTCTTGTGTGGATT	NA	False	NA	NA	False	NA	NA	NA	28293908	28285060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625
ENSMUSG00000062859.16_11	chr17	-	2309	9	ISM	ENSMUSG00000062859.16	ENSMUST00000114836.9	1752	10	312	-655	248	655	3prime_fragment	FALSE	canonical	3	13	junction_8	12.2212673238089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAACAGGCTCTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	28299249	28285063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28299132
ENSMUSG00000062859.16_13	chr17	-	1937	10	FSM	ENSMUSG00000062859.16	ENSMUST00000129046.9	1948	10	0	11	0	-7	multi-exon	FALSE	canonical	3	11	junction_9	12.0349285902676	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGCACGCAGACGGCCAT	NA	False	NA	-12	True	AATAAA	-7	NA	28299577	28285731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298895_28299280_28299548
ENSMUSG00000062859.16_4	chr17	-	1704	10	FSM	ENSMUSG00000062859.16	ENSMUST00000043925.16	1743	10	38	1	2	-1	multi-exon	FALSE	canonical	3	11	junction_9	14.4743280617618	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCAGACGGCCATTCTTCT	NA	False	NA	-6	True	AATAAA	-13	NA	28299575	28285725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28299132_28299280_28299548
ENSMUSG00000062859.16_5	chr17	-	1938	10	NIC	ENSMUSG00000062859.16	novel	1989	10	NA	NA	33	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	14.7120509938093	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCAGACGGCCATTCTTCT	NA	False	NA	-6	True	AATAAA	-13	NA	28299464	28285725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298895_28299280_28299440
ENSMUSG00000062859.16_6	chr17	-	1951	10	FSM	ENSMUSG00000062859.16	ENSMUST00000042692.13	1989	10	31	7	31	-1	multi-exon	FALSE	canonical	3	14	junction_9	11.2787355915107	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCAGACGGCCATTCTTCT	NA	False	NA	-6	True	AATAAA	-13	NA	28299530	28285725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298895_28299280_28299493
ENSMUSG00000062859.16_8	chr17	-	1274	4	ISM	ENSMUSG00000062859.16	ENSMUST00000233665.2	1033	5	591	1	591	-1	3prime_fragment	FALSE	canonical	3	45	junction_3	3.68178700572909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCAGACGGCCATTCTTCT	NA	False	NA	-6	True	AATAAA	-13	NA	28288942	28285725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431
ENSMUSG00000062859.16_9	chr17	-	1718	10	FSM	ENSMUSG00000062859.16	ENSMUST00000114836.9	1752	10	27	7	27	-1	multi-exon	FALSE	canonical	3	13	junction_8	13.923955731396	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCAGACGGCCATTCTTCT	NA	False	NA	-6	True	AATAAA	-13	NA	28299534	28285725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28299132_28299280_28299493
ENSMUSG00000062861.9_0	chr7	+	2695	7	FSM	ENSMUSG00000062861.9	ENSMUST00000081022.9	4447	7	45	1707	45	1079	multi-exon	FALSE	canonical	3	6	junction_3	4.21966296705739	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCTGAGATGTGTTTAG	3004	False	NA	NA	False	TATAAA	-18	NA	6386338	6398207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6386601_6387173_6387266_6392431_6392559_6392752_6392849_6393398_6393560_6395180_6395296_6396365
ENSMUSG00000062861.9_1	chr7	+	2586	6	NIC	ENSMUSG00000062861.9	novel	4447	7	NA	NA	32	1072	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	6.56048778674269	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGTTAATGCCTGAGATG	2991	False	NA	NA	False	TATAAA	-11	NA	6386325	6398200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_6386601_6387173_6387266_6392431_6392559_6392752_6392849_6393398_6393560_6396365
ENSMUSG00000062861.9_3	chr7	+	2820	8	NIC	ENSMUSG00000062861.9	novel	4447	7	NA	NA	33	1072	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	6.47759088500265	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGTTAATGCCTGAGATG	2992	False	NA	NA	False	TATAAA	-11	NA	6386326	6398200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_6386601_6387173_6387266_6392431_6392559_6392752_6392849_6393398_6393560_6395180_6395296_6395592_6395713_6396365
ENSMUSG00000062861.9_4	chr7	+	4334	6	NIC	ENSMUSG00000062861.9	novel	4447	7	NA	NA	25	1077	intron_retention	FALSE	canonical	3	6	junction_3	4.4988887516808	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGCCTGAGATGTGTTT	2984	False	NA	NA	False	TATAAA	-16	NA	6386318	6398205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_6386601_6387173_6387266_6392431_6392559_6392752_6392849_6393398_6395296_6396365
ENSMUSG00000062866.17_0	chr10	-	3237	1	ISM	ENSMUSG00000062866.17	ENSMUST00000105545.12	8556	13	263458	1	113335	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTAGTCCATTACTGTT	NA	False	NA	-14	True	AATAAA	-17	NA	13086698	13083461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_13083500_13086700
ENSMUSG00000062866.17_1	chr10	-	2856	12	NIC	ENSMUSG00000062866.17	novel	8556	13	NA	NA	2	-8	combination_of_known_junctions	FALSE	canonical	3	28	junction_8	9.0160554677945	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGTCTTCATTATCTCC	NA	False	NA	-14	True	AATAAA	-13	NA	13350154	13089146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13137509_13137669_13142716_13142798_13167538_13167707_13349799
ENSMUSG00000062866.17_10	chr10	-	1813	8	ISM	ENSMUSG00000062866.17	ENSMUST00000105543.9	2735	12	70691	7	70691	-7	3prime_fragment	FALSE	canonical	3	35	junction_3	7.70369643583586	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTCTTCATTATCTCCA	NA	False	NA	-13	True	AATAAA	-14	NA	13129342	13089145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085
ENSMUSG00000062866.17_12	chr10	-	2790	11	NIC	ENSMUSG00000062866.17	novel	8556	13	NA	NA	-90	-7	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	14.8727939540626	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTCTTCATTATCTCCA	NA	False	NA	-13	True	AATAAA	-14	NA	13350246	13089145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13142716_13142798_13167538_13167707_13349799
ENSMUSG00000062866.17_2	chr10	-	2859	13	FSM	ENSMUSG00000062866.17	ENSMUST00000105545.12	8556	13	10	5687	10	-9	multi-exon	FALSE	canonical	2	11	junction_9	15.1657508881031	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCTGTCTTCATTATCTC	NA	False	NA	-15	True	AATAAA	-12	NA	13350146	13089147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13131053_13131066_13137509_13137669_13142716_13142798_13167538_13167707_13349799
ENSMUSG00000062866.17_3	chr10	-	2713	12	FSM	ENSMUSG00000062866.17	ENSMUST00000105543.9	2735	12	12	10	12	-10	multi-exon	FALSE	canonical	3	9	junction_11	13.2378121085581	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCCTGTCTTCATTATCT	9914	False	NA	-16	True	AATAAA	-11	NA	13200021	13089148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13137509_13137669_13142716_13142798_13167538_13167707_13199807
ENSMUSG00000062866.17_6	chr10	-	2955	13	NIC	ENSMUSG00000062866.17	novel	2808	13	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	19.1898410623955	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTATCTCCAAAGTCAG	9922	False	NA	-6	True	AATAAA	-21	NA	13200013	13089138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13133320_13133561_13137509_13137669_13142716_13142798_13167538_13167707_13199807
ENSMUSG00000062867.14_0	chr9	+	1655	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	183	20	-1	0	multi-exon	TRUE	canonical	3	1280	junction_13	396.993628196225	1889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGTGACAACTGA	1178	False	NA	16	True	AATAAA	-9	NA	108437667	108442763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000062867.14_2	chr9	+	1727	15	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_9	848.284297862456	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGTGACAACTGA	1178	False	NA	16	True	AATAAA	-9	NA	108437667	108442763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441111_108441184_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000062901.4_0	chr16	+	4314	7	NIC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	1	-3762	intron_retention	FALSE	canonical	3	32	junction_1	23.5613855468835	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAAATTTGTATTTTAG	NA	False	NA	NA	False	TATAAA	-11	NA	19916324	19944209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_19916422_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
ENSMUSG00000062901.4_18	chr16	+	4004	6	ISM	ENSMUSG00000062901.4	ENSMUST00000023509.5	8172	8	9339	3757	9289	-3757	3prime_fragment	FALSE	canonical	3	79	junction_2	7.88416133777081	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGTATTTTAGTATTT	NA	False	NA	NA	False	TATAAA	-16	NA	19925630	19944214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
ENSMUSG00000062901.4_2	chr16	+	4377	8	FSM	ENSMUSG00000062901.4	ENSMUST00000023509.5	8172	8	33	3762	1	-3762	multi-exon	FALSE	canonical	3	70	junction_2	11.8562822407122	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAAATTTGTATTTTAG	NA	False	NA	NA	False	TATAAA	-11	NA	19916324	19944209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_19916422_19920741_19920805_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
ENSMUSG00000062901.4_21	chr16	+	3513	1	ISM	ENSMUSG00000062901.4	ENSMUST00000023509.5	8172	8	27126	1041	27076	-1041	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATAAGTATCACT	NA	False	NA	NA	False	NA	NA	NA	19943417	19946930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_19943400_19946900
ENSMUSG00000062901.4_24	chr16	+	177	1	ISM	ENSMUSG00000062901.4	ENSMUST00000023509.5	8172	8	30462	1041	30412	-1041	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATAAGTATCACT	NA	False	NA	NA	False	NA	NA	NA	19946753	19946930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_19946800_19946900
ENSMUSG00000062906.13_11	chr15	-	2641	19	NIC	ENSMUSG00000062906.13	novel	2412	20	NA	NA	2	-4	intron_retention	FALSE	canonical	3	26	junction_3	4.86642566628034	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAACACATCTCTGTC	NA	False	NA	-11	True	AATAAA	-9	NA	89012862	89007517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89008792_89008915_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010843_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89011895_89012124_89012222_89012387_89012523_89012592
ENSMUSG00000062906.13_6	chr15	-	2366	20	FSM	ENSMUSG00000062906.13	ENSMUST00000082197.12	2412	20	38	8	-1	-4	multi-exon	FALSE	canonical	3	17	junction_4	5.98567079345711	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAACACATCTCTGTC	NA	False	NA	-11	True	AATAAA	-9	NA	89012865	89007517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89008457_89008734_89008792_89008915_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010843_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89011895_89012124_89012222_89012387_89012523_89012592
ENSMUSG00000062908.13_0	chr3	-	1858	12	FSM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	186	3	0	-3	multi-exon	FALSE	canonical	3	875	junction_11	59.2580851965116	896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTTCTCTGACTCTCC	178	False	NA	-9	True	AATAAA	-13	NA	153650083	153627996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
ENSMUSG00000062908.13_1	chr3	-	1963	11	NIC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	0	-1	intron_retention	TRUE	canonical	3	875	junction_10	61.0908340096941	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCTGACTCTCCAG	178	False	NA	-7	True	AATAAA	-15	NA	153650083	153627994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644805_153647519_153647608_153650032
ENSMUSG00000062929.9_0	chr12	-	2651	4	FSM	ENSMUSG00000062929.9	ENSMUST00000221374.2	1128	4	-64	-1459	15	-20	multi-exon	FALSE	canonical	3	53	junction_2	123.758725842755	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAATACATGAAAA	NA	False	NA	-31	True	NA	NA	NA	54909647	54905621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_54908023_54908121_54908199_54908564_54908619_54909528
ENSMUSG00000062929.9_1	chr12	-	3040	4	NIC	ENSMUSG00000062929.9	novel	2940	4	NA	NA	-48	-20	combination_of_known_junctions	FALSE	canonical	3	25	junction_3	126.518334200577	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAATACATGAAAA	NA	False	NA	-31	True	NA	NA	NA	54909449	54905621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_54908023_54908121_54908199_54908310_54908619_54909195
ENSMUSG00000062929.9_2	chr12	-	2032	1	ISM	ENSMUSG00000062929.9	ENSMUST00000223450.2	2726	4	1941	17	881	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATGAAAATATTTAAAGCT	NA	False	NA	-20	True	AATAAA	-3	NA	54907642	54905610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_54905600_54907600
ENSMUSG00000062929.9_3	chr12	-	1452	4	FSM	ENSMUSG00000062929.9	ENSMUST00000078124.8	2940	4	10	1478	10	1	multi-exon	FALSE	canonical	3	200	junction_2	55.9603033904888	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATGTTGCCTTGTTTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	54909652	54907079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_54908023_54908121_54908199_54908310_54908619_54909528
ENSMUSG00000062929.9_5	chr12	-	3033	3	NIC	ENSMUSG00000062929.9	novel	2940	4	NA	NA	10	-9	intron_retention	FALSE	canonical	3	292	junction_2	21	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATGAAAATATTTAAAGCT	NA	False	NA	-20	True	AATAAA	-3	NA	54909652	54905610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_54908023_54908121_54908619_54909528
ENSMUSG00000062929.9_6	chr12	-	1296	4	FSM	ENSMUSG00000062929.9	ENSMUST00000223450.2	2726	4	-56	1486	23	1	multi-exon	FALSE	canonical	3	31	junction_2	134.037308239162	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATGTTGCCTTGTTTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	54909639	54907079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_54908023_54908121_54908199_54908453_54908619_54909528
ENSMUSG00000062931.16_0	chr10	-	2038	4	FSM	ENSMUSG00000062931.16	ENSMUST00000041264.15	2035	4	-7	4	0	0	multi-exon	FALSE	canonical	3	32	junction_1	52.6898683071254	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTTATTTATGTTGTC	NA	False	NA	NA	False	NA	NA	NA	82077114	82060687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_82062428_82063364_82063426_82063632_82063760_82077004
ENSMUSG00000062931.16_2	chr10	-	2141	4	FSM	ENSMUSG00000062931.16	ENSMUST00000156218.2	2124	4	-19	2	-19	-2	multi-exon	FALSE	canonical	2	18	junction_1	59.275252471462	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATGTTATTTATGTTG	NA	False	NA	NA	False	NA	NA	NA	82077133	82060689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_82062428_82063278_82063426_82063632_82063760_82077004
ENSMUSG00000062931.16_4	chr10	-	391	3	ISM	ENSMUSG00000062931.16	ENSMUST00000156218.2	2124	4	1	2583	1	-2583	5prime_fragment	FALSE	canonical	3	139	junction_1	4.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTGTGAGGAGTTTTAA	NA	False	NA	-26	True	NA	NA	NA	82077113	82063270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_82063426_82063632_82063760_82077004
ENSMUSG00000062931.16_5	chr10	-	3083	2	NIC	ENSMUSG00000062931.16	novel	2124	4	NA	NA	13414	280	intron_retention	FALSE	canonical	3	139	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTTTAGGGTACTTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	82063693	82060403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_82063426_82063632
ENSMUSG00000062933.8_0	chr9	+	720	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-42	-188	-42	188	mono-exon	FALSE	NA	NA	NA	NA	NA	4105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAACTAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	96777668	96778388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_96777700_96778400
ENSMUSG00000062937.8_0	chr4	+	2524	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	269	4	269	-4	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAGATGATCAGATTATAC	5317	False	NA	NA	False	NA	NA	NA	89055627	89099314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
ENSMUSG00000062937.8_22	chr4	+	1068	1	ISM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	42884	8	3632	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCTCAGATGATCAGATT	NA	False	NA	NA	False	NA	NA	NA	89098242	89099310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_89098200_89099300
ENSMUSG00000062939.12_0	chr1	+	2587	24	FSM	ENSMUSG00000062939.12	ENSMUST00000027277.7	2982	24	394	1	11	-1	multi-exon	FALSE	canonical	3	8	junction_15	7.16402480577569	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACATTTGTTTCTGGTTT	NA	False	NA	NA	False	AATATA	-17	NA	52047795	52146342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_52047888_52050941_52051071_52052948_52053094_52104473_52104573_52107904_52107998_52111019_52111099_52113835_52113922_52115691_52115844_52117652_52117812_52118899_52118993_52121676_52121737_52122020_52122039_52122136_52122231_52123237_52123283_52135943_52136028_52137545_52137645_52139482_52139619_52141010_52141061_52141275_52141371_52141639_52141777_52142006_52142199_52144364_52144432_52144826_52144936_52146068
ENSMUSG00000062939.12_2	chr1	+	2460	23	NIC	ENSMUSG00000062939.12	novel	2982	24	NA	NA	9	-1	combination_of_known_junctions	TRUE	canonical	2	4	junction_1	7.64933962471368	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACATTTGTTTCTGGTTT	NA	False	NA	NA	False	AATATA	-17	NA	52047793	52146342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_52047888_52052948_52053094_52104473_52104573_52107904_52107998_52111019_52111099_52113835_52113922_52115691_52115844_52117652_52117812_52118899_52118993_52121676_52121737_52122020_52122039_52122136_52122231_52123237_52123283_52135943_52136028_52137545_52137645_52139482_52139619_52141010_52141061_52141275_52141371_52141639_52141777_52142006_52142199_52144364_52144432_52144826_52144936_52146068
ENSMUSG00000062944.5_0	chr7	-	3606	1	FSM	ENSMUSG00000062944.5	ENSMUST00000078816.5	3574	1	-21	-11	-21	11	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTGCTTACTATTTGGT	5252	False	NA	NA	False	AATAAA	-25	NA	127837224	127833618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127833600_127837200
ENSMUSG00000062949.14_2	chrX	-	1873	1	ISM	ENSMUSG00000062949.14	ENSMUST00000154051.8	6039	30	365781	1	41667	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGGTATTCGAGTGTC	NA	False	NA	-8	True	AATAAA	-13	NA	59270523	59268650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_59268600_59270500
ENSMUSG00000062949.14_3	chrX	-	6065	30	FSM	ENSMUSG00000062949.14	ENSMUST00000101527.3	6044	30	-20	-1	-20	1	multi-exon	FALSE	canonical	3	63	junction_14	11.609582331096	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAATGGGTATTCGAGTGT	NA	False	NA	-9	True	AATAAA	-12	NA	59449192	59268651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_59271154_59274507_59274613_59281916_59282071_59283829_59283934_59286132_59286199_59288121_59288258_59290523_59290652_59293248_59293309_59305520_59305667_59307011_59307115_59312095_59312271_59315093_59315358_59321967_59322150_59322736_59322841_59324153_59324228_59325391_59325464_59326016_59326169_59326927_59327090_59335253_59335452_59335929_59336081_59337279_59337362_59337678_59337744_59338966_59339018_59340548_59340653_59342320_59342450_59349584_59349693_59352556_59352638_59355075_59355166_59366793_59366914_59448995
ENSMUSG00000062949.14_5	chrX	-	5961	29	FSM	ENSMUSG00000062949.14	ENSMUST00000033480.13	5939	29	-20	-2	-20	-1	multi-exon	FALSE	canonical	3	14	junction_1	18.7130588474619	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGGTATTCGAGTGTC	NA	False	NA	-8	True	AATAAA	-13	NA	59449192	59268650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_59271154_59281916_59282071_59283829_59283934_59286132_59286199_59288121_59288258_59290523_59290652_59293248_59293309_59305520_59305667_59307011_59307115_59312095_59312271_59315093_59315358_59321967_59322150_59322736_59322841_59324153_59324228_59325391_59325464_59326016_59326169_59326927_59327090_59335253_59335452_59335929_59336081_59337279_59337362_59337678_59337744_59338966_59339018_59340548_59340653_59342320_59342450_59349584_59349693_59352556_59352638_59355075_59355166_59366793_59366914_59448995
ENSMUSG00000062949.14_6	chrX	-	5878	29	NIC	ENSMUSG00000062949.14	novel	6044	30	NA	NA	-31	1	combination_of_known_splicesites	FALSE	canonical	2	6	junction_18	19.8131578626375	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAATGGGTATTCGAGTGT	NA	False	NA	-9	True	AATAAA	-12	NA	59449203	59268651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_59271154_59274507_59274613_59281916_59282071_59283829_59283934_59286132_59286199_59288121_59288258_59290523_59290652_59293248_59293309_59305520_59305667_59307011_59307115_59312095_59312271_59315093_59315358_59321967_59322150_59322736_59322841_59324153_59324228_59325391_59325464_59326016_59326169_59326927_59327090_59335929_59336081_59337279_59337362_59337678_59337744_59338966_59339018_59340548_59340653_59342320_59342450_59349584_59349693_59352556_59352638_59355075_59355166_59366793_59366914_59448995
ENSMUSG00000062960.11_0	chr5	-	5914	30	FSM	ENSMUSG00000062960.11	ENSMUST00000113516.2	5924	30	3	7	3	-7	multi-exon	FALSE	canonical	0	0	junction_5	1.13216932133669	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGACCCAGTGTTATCA	NA	False	NA	NA	False	AATAAA	-13	NA	76139115	76093493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_76095279_76096954_76097041_76097498_76097599_76102469_76102622_76104094_76104201_76104584_76104685_76104930_76105043_76105182_76105306_76107478_76107577_76109410_76109565_76110174_76110264_76110768_76110883_76112473_76112579_76112931_76113068_76113499_76113607_76116813_76116946_76117623_76117771_76119776_76120119_76121369_76121479_76122393_76122506_76123369_76123527_76125234_76125399_76125484_76125600_76127006_76127185_76128331_76128472_76128980_76129150_76129390_76129522_76132912_76133116_76135061_76135156_76138761
ENSMUSG00000062963.11_0	chr1	-	962	7	FSM	ENSMUSG00000062963.11	ENSMUST00000080001.9	1007	7	44	1	7	-1	multi-exon	FALSE	canonical	3	257	junction_6	130.826539101718	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGTGGTTCTCATTGAT	7327	False	NA	-1	True	AATAAA	-17	NA	171122553	171116136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206_171122401_171122493
ENSMUSG00000062963.11_2	chr1	-	843	6	FSM	ENSMUSG00000062963.11	ENSMUST00000111302.4	914	6	219	-148	172	-1	multi-exon	FALSE	canonical	3	530	junction_3	38.9943585663362	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGTGGTTCTCATTGAT	7539	False	NA	-1	True	AATAAA	-17	NA	171122341	171116136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206
ENSMUSG00000062963.11_4	chr1	-	868	6	ISM	ENSMUSG00000062963.11	ENSMUST00000144576.8	822	7	177	-130	176	-1	3prime_fragment	FALSE	canonical	3	36	junction_3	231.021211147375	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGTGGTTCTCATTGAT	7543	False	NA	-1	True	AATAAA	-17	NA	171122337	171116136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117427_171117521_171117721_171117790_171122206
ENSMUSG00000062963.11_7	chr1	-	1006	7	FSM	ENSMUSG00000062963.11	ENSMUST00000144576.8	822	7	-54	-130	-8	-1	multi-exon	FALSE	canonical	3	36	junction_3	228.930423685645	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGTGGTTCTCATTGAT	7312	False	NA	-1	True	AATAAA	-17	NA	171122568	171116136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117427_171117521_171117721_171117790_171122206_171122401_171122493
ENSMUSG00000062981.6_0	chr10	-	653	6	FSM	ENSMUSG00000062981.6	ENSMUST00000218893.2	661	6	10	-2	-3	0	multi-exon	FALSE	canonical	3	2875	junction_5	503.887924046608	832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337792	95316667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062981.6_2	chr10	-	628	5	ISM	ENSMUSG00000062981.6	ENSMUST00000075829.3	666	6	1404	1	0	-1	3prime_fragment	FALSE	canonical	3	3807	junction_1	222.820555604729	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCAAGTGTGTATTTCAT	NA	False	NA	-10	True	AATAAA	-15	NA	95336385	95316668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244
ENSMUSG00000062981.6_7	chr10	-	3877	5	NIC	ENSMUSG00000062981.6	novel	661	6	NA	NA	3	0	intron_retention	FALSE	canonical	3	2875	junction_4	535.975745719897	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337798	95316667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_95316840_95326107_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062991.10_0	chr8	-	1193	7	FSM	ENSMUSG00000062991.10	ENSMUST00000238826.2	1625	7	395	37	7	-7	multi-exon	FALSE	canonical	0	0	junction_2	1.86338998124982	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGGTTCAGATGTT	NA	False	NA	NA	False	AATAAA	-5	NA	32499174	32327232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_32327757_32339337_32339468_32437011_32437063_32439944_32439996_32448539_32448662_32458035_32458214_32499037
ENSMUSG00000062995.13_0	chr6	-	1724	14	FSM	ENSMUSG00000062995.13	ENSMUST00000038403.12	2075	14	347	4	-14	-4	multi-exon	FALSE	canonical	3	58	junction_8	7.8401183423021	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTTATTCACTCCTGTT	-3	True	NA	-5	True	AATAAA	-31	NA	8778137	8630530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588_8754752_8758365_8758459_8778071
ENSMUSG00000062997.7_0	chr2	-	446	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	499	1	-3	-1	multi-exon	FALSE	canonical	3	27807	junction_3	5721.16085733967	6141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCTTCATGTTTTACA	NA	False	NA	-10	True	AATAAA	-18	NA	38895137	38891592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
ENSMUSG00000063001.11_0	chr3	-	106	1	FSM	ENSMUSG00000063001.11	ENSMUST00000077976.9	427	1	365	-44	365	44	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATTAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-14	NA	62831289	62831183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_62831200_62831300
ENSMUSG00000063011.8_0	chr17	-	2139	16	FSM	ENSMUSG00000063011.8	ENSMUST00000238120.2	2165	16	25	1	25	-1	multi-exon	FALSE	canonical	3	34	junction_13	10.6111052937739	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCCTGTAGTGTTCCT	6617	False	NA	-3	True	AATAAA	-21	NA	25973326	25967587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105
ENSMUSG00000063011.8_15	chr17	-	2054	17	FSM	ENSMUSG00000063011.8	ENSMUST00000236137.2	2054	17	2	-2	2	-1	multi-exon	FALSE	canonical	1	2	junction_13	16.7330838087305	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCCTGTAGTGTTCCT	6594	False	NA	-3	True	AATAAA	-21	NA	25973349	25967587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972049_25972351_25972399_25972747_25972792_25973105_25973197_25973316
ENSMUSG00000063011.8_2	chr17	-	2043	17	FSM	ENSMUSG00000063011.8	ENSMUST00000237359.2	2044	17	1	0	0	0	multi-exon	FALSE	canonical	3	34	junction_13	11.5648646230728	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTCCTGTAGTGTTCC	6592	False	NA	-4	True	AATAAA	-20	NA	25973351	25967588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105_25973197_25973316
ENSMUSG00000063011.8_5	chr17	-	2451	15	NIC	ENSMUSG00000063011.8	novel	2165	16	NA	NA	28	-1	intron_retention	TRUE	canonical	3	43	junction_12	8.96592187686469	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCCTGTAGTGTTCCT	6620	False	NA	-3	True	AATAAA	-21	NA	25973323	25967587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972399_25972747_25972792_25973105
ENSMUSG00000063011.8_7	chr17	-	2361	16	NIC	ENSMUSG00000063011.8	novel	2054	17	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	35	junction_15	10.4690018626419	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCCTGTAGTGTTCCT	6590	False	NA	-3	True	AATAAA	-21	NA	25973353	25967587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972399_25972747_25972792_25973105_25973197_25973316
ENSMUSG00000063015.13_0	chr5	-	1227	1	ISM	ENSMUSG00000063015.13	ENSMUST00000058550.15	2804	7	23330	6	5055	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGTTGGTTTGTGTAGGAG	NA	False	NA	-8	True	AATAAA	-12	NA	93331024	93329797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_93329800_93331000
ENSMUSG00000063015.13_2	chr5	-	2752	7	FSM	ENSMUSG00000063015.13	ENSMUST00000058550.15	2804	7	46	6	-21	-6	multi-exon	FALSE	canonical	3	340	junction_6	48.6052694902746	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGTTGGTTTGTGTAGGAG	NA	False	NA	-8	True	AATAAA	-12	NA	93354308	93329797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_93331280_93335446_93335678_93335938_93336080_93337005_93337081_93337422_93337552_93350163_93350322_93353772
ENSMUSG00000063018.7_0	chrX	-	502	2	FSM	ENSMUSG00000063018.7	ENSMUST00000128571.2	540	2	29	9	29	-6	multi-exon	FALSE	canonical	3	121	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTAAAGTTACTTTGTG	NA	False	NA	-37	True	NA	NA	NA	7289198	7278350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_7278772_7289117
ENSMUSG00000063018.7_1	chrX	-	673	3	ISM	ENSMUSG00000063018.7	ENSMUST00000150671.2	885	4	15543	3	-6612	-3	3prime_fragment	FALSE	canonical	3	36	junction_1	10.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGTTACTTTGTGGCT	NA	False	NA	-34	True	NA	NA	NA	7295839	7278347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_7278772_7290368_7290524_7295745
ENSMUSG00000063018.7_3	chrX	-	534	2	NIC	ENSMUSG00000063018.7	novel	885	4	NA	NA	-6625	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTACTTTGTGGCTTAT	NA	False	NA	-31	True	NA	NA	NA	7295852	7278344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7278772_7295745
ENSMUSG00000063019.6_0	chr2	+	1082	3	FSM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	24	1	24	-1	multi-exon	FALSE	canonical	3	219	junction_1	136	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGCCTGTGTTGCTACT	5241	False	NA	29	True	AATAAA	-16	NA	157209537	157238682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_157209561_157220968_157221175_157237829
ENSMUSG00000063019.6_5	chr2	+	1061	2	ISM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	11453	1	11453	-1	3prime_fragment	FALSE	canonical	3	491	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGCCTGTGTTGCTACT	NA	False	NA	29	True	AATAAA	-16	NA	157220966	157238682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_157221175_157237829
ENSMUSG00000063019.6_6	chr2	+	642	1	ISM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	28527	1	28527	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGCCTGTGTTGCTACT	NA	False	NA	29	True	AATAAA	-16	NA	157238040	157238682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_157238000_157238700
ENSMUSG00000063047.10_0	chr7	-	7565	9	Fusion	ENSMUSG00000070709.13_ENSMUSG00000063047.10	novel	3354	5	NA	NA	11	1972	multi-exon	FALSE	canonical	3	5	junction_4	26.0144190786571	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGACTAGCTTGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	27678585	27604844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_-_27611687_27620121_27620221_27625708_27625836_27626825_27626879_27671047_27671147_27673143_27673271_27674177_27674231_27676164_27676259_27678514
ENSMUSG00000063047.10_1	chr7	-	5966	5	NIC	ENSMUSG00000063047.10	novel	3940	6	NA	NA	-1	-107	combination_of_known_splicesites	FALSE	canonical	2	7	junction_4	28.5864915650732	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGATATCGAAATAATG	NA	False	NA	NA	False	AATAAA	-17	NA	27678573	27658666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27678514
ENSMUSG00000063047.10_10	chr7	-	3854	5	ISM	ENSMUSG00000063047.10	ENSMUST00000206685.2	3940	6	2384	-42	-1395	42	3prime_fragment	FALSE	canonical	3	18	junction_4	24.7032386540712	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTTGTGCCCTCTCCAC	NA	False	NA	NA	False	AGTAAA	-31	NA	27676188	27660743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676164
ENSMUSG00000063047.10_2	chr7	-	3703	1	NIC	ENSMUSG00000063047.10	novel	1907	6	NA	NA	12424	-107	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGATATCGAAATAATG	NA	False	NA	NA	False	AATAAA	-17	NA	27662369	27658666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27658700_27662400
ENSMUSG00000063047.10_3	chr7	-	1809	6	FSM	ENSMUSG00000063047.10	ENSMUST00000205874.2	1907	6	-9	107	-1	-107	multi-exon	FALSE	canonical	1	1	junction_1	28.3083026690051	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGATATCGAAATAATG	NA	False	NA	NA	False	AATAAA	-17	NA	27678573	27658666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27660056_27671047_27671147_27673143_27673271_27674177_27674231_27676176_27676259_27678514
ENSMUSG00000063047.10_4	chr7	-	3984	6	NIC	ENSMUSG00000063047.10	novel	3940	6	NA	NA	2	34	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	18.9166593245213	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCTATTATTTGTGCC	NA	False	NA	NA	False	AGTAAA	-23	NA	27678594	27660751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676176_27676259_27678514
ENSMUSG00000063047.10_5	chr7	-	3964	6	FSM	ENSMUSG00000063047.10	ENSMUST00000206685.2	3940	6	-20	-4	4	4	multi-exon	FALSE	canonical	3	18	junction_4	22.29798197147	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAGTAAAAACTATAAAAAG	NA	False	NA	NA	False	TTTAAA	-32	NA	27678592	27660781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676164_27676259_27678514
ENSMUSG00000063049.5_0	chr8	-	1443	2	FSM	ENSMUSG00000063049.5	ENSMUST00000080353.3	2812	2	23	1346	23	231	multi-exon	FALSE	canonical	3	212	junction_1	0	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGACCTTAATTTTCTG	NA	False	NA	-13	True	ATTAAA	-16	NA	48128170	48121558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_48122372_48127540
ENSMUSG00000063049.5_1	chr8	-	3014	1	Genic_Genomic	ENSMUSG00000063049.5	novel	NA	NA	NA	NA	5877	2379	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48120847	48117833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_48117800_48120800
ENSMUSG00000063052.10_0	chr3	+	2697	15	FSM	ENSMUSG00000063052.10	ENSMUST00000072080.10	4142	15	42	1403	2	-5	multi-exon	TRUE	canonical	3	641	junction_2	81.4479926714224	1119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATTGGTATAGTGTTT	NA	False	NA	24	True	AATAAA	-39	NA	157742340	157772721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
ENSMUSG00000063052.10_1	chr3	+	2441	13	FSM	ENSMUSG00000063052.10	ENSMUST00000156597.8	2450	13	4	5	2	-5	multi-exon	FALSE	canonical	3	70	junction_1	215.046296694973	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATTGGTATAGTGTTT	NA	False	NA	24	True	AATAAA	-39	NA	157742340	157772721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_157742514_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
ENSMUSG00000063052.10_2	chr3	+	2626	14	NIC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	146	junction_2	190.962278254048	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGGTATAGTGTTTTTG	NA	False	NA	27	True	AATAAA	-42	NA	157742340	157772724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_157742514_157746077_157746260_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
ENSMUSG00000063060.7_1	chr14	+	3413	2	FSM	ENSMUSG00000063060.7	ENSMUST00000079652.7	3299	2	-114	0	-114	0	multi-exon	FALSE	canonical	2	2	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATTCTATCCTTTGAAAT	4569	False	NA	NA	False	AATAAA	-16	NA	64181007	64188181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_64181443_64185203
ENSMUSG00000063065.14_0	chr7	+	1770	9	FSM	ENSMUSG00000063065.14	ENSMUST00000057669.16	1800	9	25	5	-25	-5	multi-exon	FALSE	canonical	3	189	junction_5	18.155147341732	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGAGCCTGCCTCTGTCTG	5241	False	NA	26	True	TATAAA	-19	NA	126358797	126364986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126358991_126359902_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
ENSMUSG00000063077.16_0	chr4	-	9883	46	NIC	ENSMUSG00000063077.16	novel	5992	47	NA	NA	-39	-3	combination_of_known_splicesites	FALSE	canonical	3	47	junction_22	22.5611268434102	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCATGCGTGCTTTAGTC	7200	False	NA	-5	True	AATAAA	-18	NA	149392189	149260778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_149265268_149265940_149266060_149266265_149266459_149266724_149266875_149268765_149268888_149270559_149270632_149272047_149272288_149272455_149272602_149274179_149274242_149275605_149275740_149277029_149277145_149282888_149282995_149283714_149283800_149286964_149287032_149288642_149288752_149291174_149291231_149292305_149292425_149294498_149294590_149297752_149297916_149298079_149298210_149298535_149298622_149299363_149299483_149306683_149306822_149307686_149307866_149309546_149309696_149310719_149310814_149329794_149329868_149329998_149330180_149330793_149330878_149331684_149331792_149332261_149332342_149336197_149336274_149338128_149338209_149342326_149342461_149346592_149346736_149347155_149347235_149348071_149348148_149350708_149350775_149351662_149351741_149354318_149354431_149355173_149355353_149358237_149358304_149359372_149359553_149361303_149361381_149375758_149375934_149391885
ENSMUSG00000063077.16_2	chr4	-	10131	47	FSM	ENSMUSG00000063077.16	ENSMUST00000055647.15	5992	47	-225	-3914	-38	-3	multi-exon	FALSE	canonical	2	6	junction_23	26.5390624108764	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCATGCGTGCTTTAGTC	7201	False	NA	-5	True	AATAAA	-18	NA	149392188	149260778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149265268_149265940_149266060_149266265_149266459_149266724_149266875_149268765_149268888_149270559_149270632_149272047_149272288_149272455_149272602_149274179_149274242_149275605_149275740_149277029_149277145_149282888_149282995_149283714_149283800_149286964_149287032_149288642_149288752_149291174_149291231_149292305_149292425_149294498_149294590_149297752_149297916_149298079_149298210_149298535_149298622_149299363_149299483_149304998_149305248_149306683_149306822_149307686_149307866_149309546_149309696_149310719_149310814_149329794_149329868_149329998_149330180_149330793_149330878_149331684_149331792_149332261_149332342_149336197_149336274_149338128_149338209_149342326_149342461_149346592_149346736_149347155_149347235_149348071_149348148_149350708_149350775_149351662_149351741_149354318_149354431_149355173_149355353_149358237_149358304_149359372_149359553_149361303_149361381_149375758_149375934_149391885
ENSMUSG00000063077.16_21	chr4	-	7088	21	FSM	ENSMUSG00000063077.16	ENSMUST00000030806.6	6991	21	-103	6	-33	-6	multi-exon	FALSE	canonical	3	40	junction_1	18.6480561989715	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAGCCTTGGCATGATC	7206	False	NA	NA	False	AATAAA	-10	NA	149392183	149318196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149322941_149329794_149329868_149329998_149330180_149330793_149330878_149331684_149331792_149332261_149332342_149336197_149336274_149338128_149338209_149342326_149342461_149346592_149346736_149347155_149347235_149348071_149348148_149350708_149350775_149351662_149351741_149354318_149354431_149355173_149355353_149358237_149358304_149359372_149359553_149361303_149361381_149375758_149375934_149391885
ENSMUSG00000063077.16_23	chr4	-	3727	1	ISM	ENSMUSG00000063077.16	ENSMUST00000030806.6	6991	21	70157	6	10513	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAGCCTTGGCATGATC	NA	False	NA	NA	False	AATAAA	-10	NA	149321923	149318196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_149318200_149321900
ENSMUSG00000063077.16_24	chr4	-	7193	21	NIC	ENSMUSG00000063077.16	novel	6991	21	NA	NA	-60	-6	combination_of_known_splicesites	FALSE	canonical	3	8	junction_9	27.3957569707427	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAGCCTTGGCATGATC	7179	False	NA	NA	False	AATAAA	-10	NA	149392210	149318196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_149322941_149329794_149329868_149329998_149330180_149330793_149330878_149331684_149331792_149332261_149332342_149336197_149336274_149338128_149338209_149342326_149342539_149346592_149346736_149347155_149347235_149348071_149348148_149350708_149350775_149351662_149351741_149354318_149354431_149355173_149355353_149358237_149358304_149359372_149359553_149361303_149361381_149375758_149375934_149391885
ENSMUSG00000063077.16_4	chr4	-	3116	1	ISM	ENSMUSG00000063077.16	ENSMUST00000238956.2	10434	50	128255	3	6763	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCATGCGTGCTTTAGTC	NA	False	NA	-5	True	AATAAA	-18	NA	149263894	149260778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_149260800_149263900
ENSMUSG00000063108.16_10	chr9	-	6582	10	FSM	ENSMUSG00000063108.16	ENSMUST00000159569.9	11276	10	171	4523	0	2058	multi-exon	FALSE	canonical	3	28	junction_9	14.1499901845274	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGAGACAGAGTCTTGC	NA	False	NA	-8	True	AATAAA	-14	NA	20371285	20344267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20349957_20350817_20350901_20351487_20351572_20352624_20352752_20353475_20353562_20355554_20355664_20356189_20356282_20357041_20357194_20370842_20370958_20371240
ENSMUSG00000063108.16_4	chr9	-	3905	1	ISM	ENSMUSG00000063108.16	ENSMUST00000159569.9	11276	10	23286	4521	4500	2060	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAGACAGAGTCTTGCTG	NA	False	NA	-6	True	AATAAA	-16	NA	20348170	20344265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20344300_20348200
ENSMUSG00000063108.16_5	chr9	-	6735	9	ISM	ENSMUSG00000063108.16	ENSMUST00000159569.9	11276	10	303	4521	-30	2060	3prime_fragment	FALSE	canonical	3	62	junction_5	6.557438524302	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAGACAGAGTCTTGCTG	NA	False	NA	-6	True	AATAAA	-16	NA	20371153	20344265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20349957_20350817_20350901_20351487_20351572_20352624_20352752_20353475_20353562_20355554_20355664_20356189_20356282_20357041_20357194_20370842
ENSMUSG00000063108.16_8	chr9	-	6576	10	NIC	ENSMUSG00000063108.16	novel	11276	10	NA	NA	13	2058	combination_of_known_junctions	FALSE	canonical	3	10	junction_9	19.3964487013015	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGAGACAGAGTCTTGC	NA	False	NA	-8	True	AATAAA	-14	NA	20371240	20344267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_20349957_20350817_20350901_20351487_20351572_20352624_20352752_20353475_20353562_20355554_20355664_20356189_20356282_20357041_20357194_20370842_20370958_20371201
ENSMUSG00000063145.11_0	chr2	+	1432	12	FSM	ENSMUSG00000063145.11	ENSMUST00000074963.9	1468	12	33	3	11	-3	multi-exon	FALSE	canonical	3	71	junction_4	9.81144550053239	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTAATGTTTTGAAAGTA	NA	False	NA	3	True	AATAAA	-17	NA	69477584	69497912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69484589_69484718_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
ENSMUSG00000063145.11_1	chr2	+	3900	9	NIC	ENSMUSG00000063145.11	novel	1468	12	NA	NA	-9	-5	intron_retention	FALSE	canonical	3	79	junction_5	8.51377560192891	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAATTAATGTTTTGAAAG	NA	False	NA	1	True	AATAAA	-15	NA	69477587	69497910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_69477687_69479365_69479449_69483125_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
ENSMUSG00000063145.11_2	chr2	+	2687	10	NIC	ENSMUSG00000063145.11	novel	1468	12	NA	NA	-9	-3	intron_retention	FALSE	canonical	3	79	junction_3	8.95392871906924	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTAATGTTTTGAAAGTA	NA	False	NA	3	True	AATAAA	-17	NA	69477587	69497912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
ENSMUSG00000063145.11_8	chr2	+	1293	11	FSM	ENSMUSG00000063145.11	ENSMUST00000134659.8	1124	11	76	-245	-6	-8	multi-exon	FALSE	canonical	2	3	junction_4	27.5109069279804	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACTAATTAATGTTTTGA	NA	False	NA	-2	True	AATAAA	-12	NA	69477590	69497907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
ENSMUSG00000063146.12_0	chr5	-	4893	16	FSM	ENSMUSG00000063146.12	ENSMUST00000036999.10	4893	16	-1	1	-1	-1	multi-exon	FALSE	canonical	0	0	junction_5	1.93907194296653	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGCTGCTGCCTGCTT	NA	False	NA	NA	False	AATAAA	-21	NA	134581289	134518237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_134519647_134520746_134520810_134521072_134521259_134523062_134523223_134525082_134525240_134526943_134527028_134528945_134529004_134531379_134532316_134539016_134539078_134542849_134542954_134544934_134545133_134545669_134545884_134546760_134546886_134551439_134551997_134563900_134564092_134580899
ENSMUSG00000063160.13_0	chr7	+	2707	10	FSM	ENSMUSG00000063160.13	ENSMUST00000079258.7	2760	10	53	0	-5	0	multi-exon	FALSE	canonical	3	70	junction_4	11.8415464455544	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACTGGGAAATCAAGGTG	NA	False	NA	9	True	AATAAA	-18	NA	26958202	26981566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_26958387_26961592_26961678_26964300_26964441_26965979_26966055_26966151_26966227_26968203_26968345_26973379_26973570_26976051_26976358_26978928_26979052_26980178
ENSMUSG00000063160.13_11	chr7	+	1961	4	ISM	ENSMUSG00000063160.13	ENSMUST00000134215.2	3153	9	12624	-161	12624	1	3prime_fragment	FALSE	canonical	3	88	junction_2	6.79869268479038	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTGGGAAATCAAGGTGT	NA	False	NA	10	True	AATAAA	-19	NA	26973426	26981567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_26973570_26976051_26976358_26978928_26979052_26980178
ENSMUSG00000063160.13_12	chr7	+	1718	3	ISM	ENSMUSG00000063160.13	ENSMUST00000134215.2	3153	9	15348	-160	15348	0	3prime_fragment	FALSE	canonical	3	88	junction_1	8	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACTGGGAAATCAAGGTG	NA	False	NA	9	True	AATAAA	-18	NA	26976150	26981566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_26976358_26978928_26979052_26980178
ENSMUSG00000063160.13_14	chr7	+	1040	1	ISM	ENSMUSG00000063160.13	ENSMUST00000079258.7	2760	10	22376	1	19723	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCACTGGGAAATCAAGGT	NA	False	NA	8	True	AATAAA	-17	NA	26980525	26981565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_26980500_26981600
ENSMUSG00000063160.13_4	chr7	+	2796	9	FSM	ENSMUSG00000063160.13	ENSMUST00000134215.2	3153	9	517	-160	517	0	multi-exon	FALSE	canonical	3	70	junction_3	12.1320855585509	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACTGGGAAATCAAGGTG	NA	False	NA	9	True	AATAAA	-18	NA	26961319	26981566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_26961678_26964300_26964441_26965979_26966055_26966151_26966227_26968203_26968345_26973379_26973570_26976051_26976358_26978928_26979052_26980178
ENSMUSG00000063160.13_9	chr7	+	2191	6	ISM	ENSMUSG00000063160.13	ENSMUST00000134215.2	3153	9	5381	-160	5381	0	3prime_fragment	FALSE	canonical	3	79	junction_2	9.04212364436585	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACTGGGAAATCAAGGTG	NA	False	NA	9	True	AATAAA	-18	NA	26966183	26981566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_26966227_26968203_26968345_26973379_26973570_26976051_26976358_26978928_26979052_26980178
ENSMUSG00000063171.5_0	chr6	+	943	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1687	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	13	True	ATTAAA	-17	NA	148256153	148257096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_148256200_148257100
ENSMUSG00000063172.14_1	chr4	+	646	6	NNC	ENSMUSG00000063172.14	novel	581	6	NA	NA	21	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	155.089135660755	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTCTGATTCCATTTTT	NA	False	NA	-1	True	ATTAAA	-10	NA	107110810	107137126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_107110919_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUSG00000063172.14_2	chr4	+	641	6	FSM	ENSMUSG00000063172.14	ENSMUST00000046558.8	608	6	-32	-1	-5	1	multi-exon	FALSE	canonical	3	140	junction_1	99.534114754691	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTCTGATTCCATTTTT	NA	False	NA	-1	True	ATTAAA	-10	NA	107111089	107137126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107111193_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUSG00000063172.14_3	chr4	+	608	6	FSM	ENSMUSG00000063172.14	ENSMUST00000106749.8	607	6	-10	9	-5	1	multi-exon	FALSE	canonical	3	216	junction_1	69.6746725862418	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTCTGATTCCATTTTT	NA	False	NA	-1	True	ATTAAA	-10	NA	107111089	107137126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_107111160_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUSG00000063172.14_6	chr4	+	542	5	ISM	ENSMUSG00000063172.14	ENSMUST00000046558.8	608	6	8541	-4	-1	0	3prime_fragment	FALSE	canonical	3	358	junction_3	17.4696164811939	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGATTCCATTTTTTTT	NA	False	NA	2	True	ATTAAA	-13	NA	107119662	107137129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUSG00000063179.14_0	chr7	+	1109	6	FSM	ENSMUSG00000063179.14	ENSMUST00000075610.13	1135	6	19	7	3	0	multi-exon	FALSE	canonical	3	133	junction_2	32.2713495224479	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAAATGTCTGATTTGGA	NA	False	NA	15	True	ATTAAA	-15	NA	130972888	130989561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130989346
ENSMUSG00000063179.14_1	chr7	+	807	5	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	59.6547357717726	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAAATGTCTGATTTGGA	NA	False	NA	15	True	ATTAAA	-15	NA	130972895	130989561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_130973119_130975793_130975993_130985653_130985730_130986228_130986323_130989346
ENSMUSG00000063179.14_11	chr7	+	1118	5	ISM	ENSMUSG00000063179.14	ENSMUST00000075610.13	1135	6	2154	9	260	-2	3prime_fragment	FALSE	canonical	3	133	junction_1	33.8378486313773	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTCAAATGTCTGATTTG	NA	False	NA	13	True	ATTAAA	-13	NA	130975023	130989559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130989346
ENSMUSG00000063179.14_18	chr7	+	1342	5	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	4	0	intron_retention	FALSE	canonical	3	158	junction_1	24.4885177174936	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAAATGTCTGATTTGGA	NA	False	NA	15	True	ATTAAA	-15	NA	130972889	130989561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_130973119_130975264_130975993_130985653_130985730_130986228_130986323_130989346
ENSMUSG00000063179.14_2	chr7	+	3482	4	FSM	ENSMUSG00000063179.14	ENSMUST00000124672.8	1615	4	-1868	1	0	0	multi-exon	FALSE	canonical	3	189	junction_2	16.6799946709291	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAAATGTCTGATTTGGA	NA	False	NA	15	True	ATTAAA	-15	NA	130972895	130989561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_130975993_130985653_130985730_130986228_130986323_130989346
ENSMUSG00000063179.14_3	chr7	+	668	1	FSM	ENSMUSG00000063179.14	ENSMUST00000207419.2	675	1	4	3	3	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	AAGAAA	-7	NA	130972888	130973556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_130972900_130973600
ENSMUSG00000063179.14_6	chr7	+	1155	6	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	0	-11	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	73.3746550247427	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTAGCAACAACTTGTT	NA	False	NA	NA	False	AATAAA	-10	NA	130972885	130994486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130994228
ENSMUSG00000063200.5_0	chr13	+	933	8	FSM	ENSMUSG00000063200.5	ENSMUST00000071926.5	1800	8	-6	873	-6	-6	multi-exon	FALSE	canonical	3	1274	junction_1	87.1250567299906	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGCTGGTCACATTTC	NA	False	NA	25	True	TATAAA	-25	NA	43551859	43555464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUSG00000063200.5_13	chr13	+	737	7	NIC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	21	-6	intron_retention	FALSE	canonical	3	1367	junction_3	68.3408532447629	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGCTGGTCACATTTC	NA	False	NA	25	True	TATAAA	-25	NA	43552131	43555464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUSG00000063229.16_2	chr7	+	1580	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	5	3	1	-2	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	8592	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCTCTGCTCTTTTAT	NA	False	NA	16	True	AATAAA	-12	NA	46495267	46505048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ENSMUSG00000063235.19_1	chr2	-	812	4	FSM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	225	279	-151	2	multi-exon	FALSE	canonical	3	312	junction_3	26.7332502076846	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGATTGTCTGGCTAAA	NA	False	NA	NA	False	NA	NA	NA	90748164	90741335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_90741664_90744327_90744520_90747772_90747854_90747953
ENSMUSG00000063235.19_2	chr2	-	847	3	ISM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	290	279	-86	2	intron_retention	FALSE	canonical	3	356	junction_2	10	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGATTGTCTGGCTAAA	NA	False	NA	NA	False	NA	NA	NA	90748099	90741335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_90741664_90744327_90744520_90747772
ENSMUSG00000063235.19_3	chr2	-	2308	1	NIC	ENSMUSG00000063235.19	novel	3313	5	NA	NA	4574	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGGGACTCCCCTCA	1913	False	NA	-3	True	AATAAA	-24	NA	90743366	90741058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_90741100_90743400
ENSMUSG00000063235.19_7	chr2	-	3844	2	FSM	ENSMUSG00000063235.19	ENSMUST00000150556.2	379	2	-150	-3315	-150	-10	multi-exon	FALSE	canonical	3	356	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTGGCCCTGTGGGAC	NA	False	NA	-11	True	AATAAA	-16	NA	90748163	90741066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_90744520_90747772
ENSMUSG00000063236.7_0	chr15	+	1032	5	FSM	ENSMUSG00000063236.7	ENSMUST00000071792.7	1043	5	11	0	-5	0	multi-exon	TRUE	canonical	1	74	junction_2	101.489839392917	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	False	NA	21	True	AATAAA	-13	NA	76832716	76834929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76832745_76832828_76833120_76833267_76833353_76833743_76833891_76834448
ENSMUSG00000063236.7_1	chr15	+	1410	4	NIC	ENSMUSG00000063236.7	novel	1043	5	NA	NA	-3	-4	intron_retention	FALSE	canonical	1	74	junction_2	91.5435536901546	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAATAGGATGGTGTGA	NA	False	NA	17	True	AATAAA	-9	NA	76832725	76834925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76832745_76832828_76833120_76833267_76833891_76834448
ENSMUSG00000063236.7_4	chr15	+	1395	3	NIC	ENSMUSG00000063236.7	novel	1111	4	NA	NA	99	-1	intron_retention	FALSE	canonical	1	74	junction_1	107	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATAGGATGGTGTGAGAG	NA	False	NA	20	True	AATAAA	-12	NA	76832827	76834928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_76833120_76833267_76833891_76834448
ENSMUSG00000063236.7_6	chr15	+	1001	4	FSM	ENSMUSG00000063236.7	ENSMUST00000230274.2	1111	4	106	4	99	-4	multi-exon	FALSE	canonical	1	74	junction_1	105.909814884594	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAATAGGATGGTGTGA	NA	False	NA	17	True	AATAAA	-9	NA	76832827	76834925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76833120_76833267_76833353_76833743_76833891_76834448
ENSMUSG00000063239.18_0	chr17	-	2684	7	ISM	ENSMUSG00000063239.18	ENSMUST00000118161.3	4607	11	61409	6	21070	2	3prime_fragment	FALSE	canonical	2	11	junction_6	4.87909372276815	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGCCTGCGTGTCCACT	NA	False	NA	-6	True	AATAAA	-20	NA	27670971	27644878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27645808_27650305_27650553_27653506_27654443_27657269_27657407_27657635_27657837_27669098_27669240_27670878
ENSMUSG00000063239.18_15	chr17	-	2934	9	ISM	ENSMUSG00000063239.18	ENSMUST00000118161.3	4607	11	40447	6	108	2	3prime_fragment	FALSE	canonical	2	11	junction_6	4.33012701892219	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGCCTGCGTGTCCACT	NA	False	NA	-6	True	AATAAA	-20	NA	27691933	27644878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27645808_27650305_27650553_27653506_27654443_27657269_27657407_27657635_27657837_27669098_27669240_27670878_27671034_27673460_27673597_27691881
ENSMUSG00000063239.18_2	chr17	-	3251	10	ISM	ENSMUSG00000063239.18	ENSMUST00000118161.3	4607	11	10608	6	506	2	3prime_fragment	FALSE	canonical	2	11	junction_6	4.15739709641549	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGCCTGCGTGTCCACT	7308	False	NA	-6	True	AATAAA	-20	NA	27721772	27644878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27645808_27650305_27650553_27653506_27654443_27657269_27657407_27657635_27657837_27669098_27669240_27670878_27671034_27673460_27673597_27691881_27692099_27721620
ENSMUSG00000063239.18_3	chr17	-	4418	11	FSM	ENSMUSG00000063239.18	ENSMUST00000118161.3	4607	11	183	6	183	2	multi-exon	FALSE	canonical	2	4	junction_10	6.16116872029975	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGCCTGCGTGTCCACT	NA	False	NA	-6	True	AATAAA	-20	NA	27732197	27644878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27645808_27650305_27650553_27653506_27654443_27657269_27657407_27657635_27657837_27669098_27669240_27670878_27671034_27673460_27673597_27691881_27692099_27721620_27722508_27731765
ENSMUSG00000063239.18_5	chr17	-	1627	3	ISM	ENSMUSG00000063239.18	ENSMUST00000231809.2	3298	9	68341	-338	38084	2	3prime_fragment	FALSE	canonical	3	22	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGCCTGCGTGTCCACT	NA	False	NA	-6	True	AATAAA	-20	NA	27653957	27644878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27645808_27650305_27650553_27653506
ENSMUSG00000063245.12_53	chr4	+	4288	5	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-178463	63385	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	178.237727487757	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	1969	False	NA	NA	False	AATAAA	-13	NA	146516954	146806002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_146516986_146697966_146698060_146797295_146797381_146800390_146800518_146802050
ENSMUSG00000063253.12_0	chr8	-	1778	4	FSM	ENSMUSG00000063253.12	ENSMUST00000212031.2	409	4	5	-1374	1	-3	multi-exon	FALSE	canonical	3	281	junction_1	12.1928941054479	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTTTGTGTGTGTGTGTG	7424	False	NA	-5	True	AATAAA	-13	NA	84169129	84161126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84169050
ENSMUSG00000063253.12_1	chr8	-	1769	4	FSM	ENSMUSG00000063253.12	ENSMUST00000167525.3	1764	4	13	-18	1	-3	multi-exon	FALSE	canonical	3	29	junction_2	125.913550590166	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTTTGTGTGTGTGTGTG	7430	False	NA	-5	True	AATAAA	-13	NA	84169123	84161126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84162670_84164181_84164263_84164613_84164686_84169050
ENSMUSG00000063253.12_2	chr8	-	1234	1	ISM	ENSMUSG00000063253.12	ENSMUST00000081506.11	1791	4	22618	3	2096	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTTTGTGTGTGTGTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	84162360	84161126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_84161100_84162400
ENSMUSG00000063268.13_0	chr15	-	3274	11	FSM	ENSMUSG00000063268.13	ENSMUST00000075689.7	3284	11	10	0	3	0	multi-exon	FALSE	canonical	1	1	junction_2	1.74355957741627	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAGAAGGACCGGCTGGA	NA	False	NA	NA	False	AATAAA	-16	NA	76127631	76117202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76117807_76117897_76118073_76124248_76124383_76124486_76125132_76125355_76125429_76125525_76125748_76125857_76126523_76126602_76126840_76126931_76127187_76127263_76127443_76127546
ENSMUSG00000063273.12_0	chr3	+	4138	20	FSM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	-9	1961	-9	1806	multi-exon	FALSE	canonical	3	462	junction_18	45.4091281535727	1011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGTTGTGTGAATAT	NA	False	NA	16	True	AATAAA	-9	NA	51323427	51381445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504_51368699_51370684_51370794_51373014_51373114_51377506_51377651_51378905_51379004_51380020
ENSMUSG00000063273.12_11	chr3	+	118	1	ISM	ENSMUSG00000063273.12	ENSMUST00000193266.6	7480	20	852	60390	-16	-26746	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAGAGAGAAAAAAAAGAAA	NA	False	NA	37	True	NA	NA	NA	51323420	51323538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_51323400_51323500
ENSMUSG00000063273.12_88	chr3	+	2015	1	ISM	ENSMUSG00000063273.12	ENSMUST00000193266.6	7480	20	57840	1505	3842	-983	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGACAGTGGATACATTG	NA	False	NA	12	True	AATAAA	-22	NA	51380408	51382423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_51380400_51382400
ENSMUSG00000063275.16_0	chr2	-	840	6	FSM	ENSMUSG00000063275.16	ENSMUST00000091429.12	871	6	23	8	23	-8	multi-exon	FALSE	canonical	1	3	junction_3	43.3340512761039	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACCATGGATTGCATTG	NA	False	NA	-10	True	AATAAA	-11	NA	14060808	14031649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_14031818_14040589_14040769_14049593_14049683_14049758_14049778_14049948_14050067_14060541
ENSMUSG00000063281.10_1	chr18	+	2354	3	FSM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	39	647	39	-647	multi-exon	FALSE	canonical	3	128	junction_1	18.5	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTCTCTTGCATCGT	1098	False	NA	44	True	NA	NA	NA	24122727	24137786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_24122789_24123234_24123448_24135706
ENSMUSG00000063281.10_4	chr18	+	2295	2	ISM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	544	647	544	-647	3prime_fragment	FALSE	canonical	3	165	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTCTCTTGCATCGT	1603	False	NA	44	True	NA	NA	NA	24123232	24137786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_24123448_24135706
ENSMUSG00000063281.10_5	chr18	+	1674	1	ISM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	13424	647	13424	-647	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTCTCTTGCATCGT	NA	False	NA	44	True	NA	NA	NA	24136112	24137786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_24136100_24137800
ENSMUSG00000063296.6_0	chr15	+	2817	8	FSM	ENSMUSG00000063296.6	ENSMUST00000080141.6	2717	8	-101	1	-83	-1	multi-exon	FALSE	canonical	3	72	junction_7	14.5195153683108	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAATTGTGTGATGTAGGT	NA	False	NA	3	True	AATAAA	-16	NA	94527029	94993978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_94527184_94535941_94536245_94612742_94612876_94777261_94777362_94829676_94829775_94909196_94909357_94972284_94972415_94992239
ENSMUSG00000063296.6_1	chr15	+	375	2	ISM	ENSMUSG00000063296.6	ENSMUST00000229677.2	2662	3	-90	78875	-90	-78875	5prime_fragment	FALSE	canonical	3	120	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGGATTTTGAAGGTGC	NA	False	NA	NA	False	AATAAA	-18	NA	94527022	94536155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_94527184_94535941
ENSMUSG00000063316.14_0	chr11	+	484	5	FSM	ENSMUSG00000063316.14	ENSMUST00000077856.13	614	5	110	20	-30	-20	multi-exon	FALSE	canonical	3	8302	junction_4	1985.8892844265	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATTAAAAAAAAAAAAA	2351	False	NA	42	True	NA	NA	NA	101333233	101336335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101333283_101333548_101333632_101334326_101334497_101336045_101336157_101336264
ENSMUSG00000063316.14_5	chr11	+	701	4	FSM	ENSMUSG00000063316.14	ENSMUST00000107249.8	732	4	11	20	11	-20	multi-exon	FALSE	canonical	3	8302	junction_3	2031.83972465022	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATTAAAAAAAAAAAAA	2400	False	NA	42	True	NA	NA	NA	101333282	101336335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101333632_101334326_101334497_101336045_101336157_101336264
ENSMUSG00000063317.8_0	chr7	-	4652	1	ISM	ENSMUSG00000063317.8	ENSMUST00000046929.7	10198	16	60572	9	20134	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCAAGACATATTTGTCT	NA	False	NA	-10	True	AATAAA	-18	NA	121245904	121241252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_121241300_121245900
ENSMUSG00000063317.8_1	chr7	-	6937	16	FSM	ENSMUSG00000063317.8	ENSMUST00000046929.7	10198	16	-187	3448	-187	-3448	multi-exon	FALSE	canonical	3	25	junction_6	9.44363395215117	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTCTTTTCCTGTAAAC	NA	False	NA	-16	True	AATAAA	-16	NA	121306663	121244691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_121248975_121250704_121250858_121252324_121252484_121258110_121258337_121260568_121260689_121266026_121266157_121267010_121267089_121268877_121268973_121269435_121269548_121272299_121272478_121274078_121274224_121276464_121276601_121277329_121277423_121277515_121277602_121278607_121278746_121305858
ENSMUSG00000063317.8_11	chr7	-	3017	15	ISM	ENSMUSG00000063317.8	ENSMUST00000046929.7	10198	16	-180	9091	-180	7670	5prime_fragment	FALSE	canonical	3	25	junction_5	9.49032805179106	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTTTGTCTTTTTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	121306656	121250334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_121250858_121252324_121252484_121258110_121258337_121260568_121260689_121266026_121266157_121267010_121267089_121268877_121268973_121269435_121269548_121272299_121272478_121274078_121274224_121276464_121276601_121277329_121277423_121277515_121277602_121278607_121278746_121305858
ENSMUSG00000063320.12_10	chr10	-	503	3	FSM	ENSMUSG00000063320.12	ENSMUST00000079648.12	716	3	38	175	-21	0	multi-exon	FALSE	canonical	3	302	junction_2	73.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAGGGGGCTCAATGGC	NA	False	NA	0	True	AGTAAA	-20	NA	82458992	82455859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_82456052_82458541_82458659_82458798
ENSMUSG00000063320.12_12	chr10	-	307	1	ISM	ENSMUSG00000063320.12	ENSMUST00000176200.8	586	2	2761	8	2761	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGATAGTCTTACTATAC	NA	False	NA	-8	True	NA	NA	NA	82455999	82455692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_82455700_82456000
ENSMUSG00000063320.12_13	chr10	-	392	2	FSM	ENSMUSG00000063320.12	ENSMUST00000176200.8	586	2	19	175	19	0	multi-exon	FALSE	canonical	3	449	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAGGGGGCTCAATGGC	NA	False	NA	0	True	AGTAAA	-20	NA	82458741	82455859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_82456052_82458541
ENSMUSG00000063320.12_15	chr10	-	366	3	FSM	ENSMUSG00000063320.12	ENSMUST00000185168.8	469	3	17	86	-15	-2	multi-exon	FALSE	canonical	3	100	junction_2	174.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTTAGGGGGCTCAATG	NA	False	NA	-2	True	AGTAAA	-18	NA	82459045	82455861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_82456052_82458541_82458659_82458986
ENSMUSG00000063320.12_9	chr10	-	416	3	FSM	ENSMUSG00000063320.12	ENSMUST00000183363.2	406	3	-11	1	-5	-1	multi-exon	FALSE	canonical	3	187	junction_2	131	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTAGGGGGCTCAATGG	NA	False	NA	-1	True	AGTAAA	-19	NA	82459035	82455860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_82456052_82458541_82458659_82458927
ENSMUSG00000063334.17_0	chr10	+	2573	10	FSM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	116	2334	5	-796	multi-exon	FALSE	canonical	3	311	junction_6	38.1443004172444	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAAGTATTTCTTTTAA	NA	False	NA	-17	True	ATTAAA	-21	NA	111808684	111822003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
ENSMUSG00000063334.17_24	chr10	+	1222	1	ISM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	12231	2316	12102	-778	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAAGTAGTTTGTTTAT	NA	False	NA	1	True	ATTAAA	-39	NA	111820799	111822021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_111820800_111822000
ENSMUSG00000063354.8_0	chr15	-	2212	12	FSM	ENSMUSG00000063354.8	ENSMUST00000230977.2	2750	12	538	0	2	0	multi-exon	FALSE	canonical	3	334	junction_11	41.2272476696326	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAACTACACTGTCTT	8668	False	NA	-10	True	AATAAA	-13	NA	76501046	76496590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
ENSMUSG00000063354.8_1	chr15	-	1927	11	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_10	121.107555503362	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAACTACACTGTCTT	8668	False	NA	-10	True	AATAAA	-13	NA	76501046	76496590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500772
ENSMUSG00000063354.8_14	chr15	-	2054	11	FSM	ENSMUSG00000063354.8	ENSMUST00000073428.7	2063	11	1	8	1	0	multi-exon	FALSE	canonical	3	24	junction_5	124.203099800287	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAACTACACTGTCTT	8667	False	NA	-10	True	AATAAA	-13	NA	76501047	76496590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
ENSMUSG00000063354.8_8	chr15	-	1737	10	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_9	124.308258816044	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAACTACACTGTCTT	8662	False	NA	-10	True	AATAAA	-13	NA	76501052	76496590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76500772
ENSMUSG00000063358.18_0	chr16	+	2892	9	FSM	ENSMUSG00000063358.18	ENSMUST00000232611.2	2390	9	27	-529	27	529	multi-exon	FALSE	canonical	3	119	junction_8	172.340097989412	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGATAAGATTCAGTGTTG	NA	False	NA	33	True	AATAAA	-23	NA	16801272	16863142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177_16856299_16861549
ENSMUSG00000063358.18_1	chr16	+	2896	9	FSM	ENSMUSG00000063358.18	ENSMUST00000069107.14	5099	9	28	2175	28	529	multi-exon	FALSE	canonical	3	513	junction_8	49.657420140398	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGATAAGATTCAGTGTTG	NA	False	NA	33	True	AATAAA	-23	NA	16801273	16863142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177_16856304_16861549
ENSMUSG00000063358.18_4	chr16	+	1917	8	FSM	ENSMUSG00000063358.18	ENSMUST00000115731.10	1747	8	-157	-13	28	13	multi-exon	FALSE	canonical	3	566	junction_5	32.3728281124773	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAAGATTTGAAAGG	NA	False	NA	NA	False	AATAAA	-8	NA	16801273	16856917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177
ENSMUSG00000063358.18_49	chr16	+	3171	1	ISM	ENSMUSG00000063358.18	ENSMUST00000069107.14	5099	9	60870	31	8660	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTACAAAAAAAAAAATCCT	9811	False	NA	-14	True	AAAAAG	-2	NA	16862115	16865286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_16862100_16865300
ENSMUSG00000063362.14_1	chr8	+	4959	4	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	-2	-7	intron_retention	FALSE	canonical	3	51	junction_2	7.11805216802087	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCAACCTGCTGGCTCCC	NA	False	NA	-2	True	NA	NA	NA	22550734	22561636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_22550787_22551901_22552137_22555015_22555948_22557896
ENSMUSG00000063362.14_13	chr8	+	4319	2	ISM	ENSMUSG00000063362.14	ENSMUST00000110737.3	4833	4	4631	7	-3663	-7	3prime_fragment	FALSE	canonical	3	65	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCAACCTGCTGGCTCCC	NA	False	NA	-2	True	NA	NA	NA	22555368	22561636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_22555948_22557896
ENSMUSG00000063362.14_14	chr8	+	2607	1	ISM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	8296	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAACCTGCTGGCTCCCTTT	NA	False	NA	1	True	NA	NA	NA	22559032	22561639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_22559000_22561600
ENSMUSG00000063362.14_2	chr8	+	4954	4	FSM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	-1	7	-1	-7	multi-exon	FALSE	canonical	3	45	junction_2	9.93310961716756	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCAACCTGCTGGCTCCC	NA	False	NA	-2	True	NA	NA	NA	22550735	22561636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_22550787_22551901_22552133_22555015_22555948_22557896
ENSMUSG00000063364.11_1	chr2	-	5494	5	FSM	ENSMUSG00000063364.11	ENSMUST00000152036.8	745	5	10	-4759	1	4759	multi-exon	FALSE	canonical	0	0	junction_4	9.3407708461347	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTGTTTCAAGTT	NA	False	NA	NA	False	NA	NA	NA	150204652	150179996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_150185076_150186228_150186290_150186499_150186627_150202030_150202113_150204507
ENSMUSG00000063364.11_7	chr2	-	5416	4	NIC	ENSMUSG00000063364.11	novel	745	5	NA	NA	1	4752	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	3.29983164553722	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTGATGTGTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	150204663	150180003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_150185076_150186228_150186290_150186499_150186627_150204507
ENSMUSG00000063382.7_0	chr9	+	5205	8	FSM	ENSMUSG00000063382.7	ENSMUST00000220303.2	5760	8	-30	585	-30	-585	multi-exon	FALSE	canonical	2	12	junction_1	3.98978286964827	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCCTCCAGTGTT	1888	False	NA	10	True	AAAAAG	-2	NA	44394091	44421134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44394784_44412041_44412428_44413098_44413219_44416349_44416561_44416712_44416798_44416880_44419168_44419449_44419732_44419992
ENSMUSG00000063382.7_11	chr9	+	5401	10	NIC	ENSMUSG00000063382.7	novel	5760	8	NA	NA	-75	-593	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	7.10416327250924	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAAGTTTTGTTTTTCCT	1843	False	NA	2	True	GGGGCT	-26	NA	44394046	44421126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_44394784_44400951_44401009_44410744_44410847_44412041_44412428_44413098_44413219_44416349_44416561_44416712_44416798_44416880_44419168_44419449_44419732_44419992
ENSMUSG00000063382.7_2	chr9	+	4650	9	NNC	ENSMUSG00000063382.7	novel	522	2	NA	NA	-63	-575	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	6.62853679178143	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGTGTTGGGATGGATG	1810	False	NA	20	True	AAAAAG	-12	NA	44409540	44421144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_44409566_44410744_44410847_44412041_44412428_44413098_44413219_44416349_44416561_44416712_44416798_44416880_44419168_44419449_44419732_44419992
ENSMUSG00000063382.7_5	chr9	+	4430	3	ISM	ENSMUSG00000063382.7	ENSMUST00000074989.7	5339	9	7671	-1356	7535	-117	3prime_fragment	FALSE	canonical	3	13	junction_2	5.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATATGTGAAGACATCTTC	NA	False	NA	NA	False	NA	NA	NA	44418103	44423076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44419168_44419449_44419732_44419992
ENSMUSG00000063382.7_7	chr9	+	2003	1	ISM	ENSMUSG00000063382.7	ENSMUST00000218183.2	6771	10	22647	0	10622	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGCCATCTCTTGCAT	1859	False	NA	4	True	ATTAAA	-13	NA	44421190	44423193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44421200_44423200
ENSMUSG00000063383.6_1	chr17	-	2631	5	FSM	ENSMUSG00000063383.6	ENSMUST00000080249.6	2872	5	237	4	237	-4	multi-exon	FALSE	canonical	3	22	junction_1	1.11803398874989	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGAACTTGGCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	22384934	22363343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_22365516_22366369_22366497_22369015_22369064_22382167_22382317_22384799
ENSMUSG00000063383.6_2	chr17	-	642	4	ISM	ENSMUSG00000063383.6	ENSMUST00000080249.6	2872	5	168	2916	168	-2916	5prime_fragment	FALSE	canonical	3	23	junction_2	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAACATAAGTTCTTTACT	NA	False	NA	NA	False	AATAAA	-14	NA	22385003	22366255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_22366497_22369015_22369064_22382167_22382317_22384799
ENSMUSG00000063406.12_0	chr5	-	3723	4	FSM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	57	20	2	-20	multi-exon	FALSE	canonical	3	224	junction_1	14.1656862405839	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTCTTACCAACCTA	NA	False	NA	-20	True	AATAAA	-11	NA	108280429	108269512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101
ENSMUSG00000063406.12_3	chr5	-	2417	1	ISM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	8561	16	8471	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTTACCAACCTATCAT	NA	False	NA	-16	True	AATAAA	-15	NA	108271925	108269508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_108269500_108271900
ENSMUSG00000063406.12_4	chr5	-	3575	3	NIC	ENSMUSG00000063406.12	novel	3800	4	NA	NA	-14	-18	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	115.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTCTTACCAACCTATC	NA	False	NA	-18	True	AATAAA	-13	NA	108280463	108269510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_108272626_108277883_108277982_108280101
ENSMUSG00000063410.9_0	chr14	-	4733	11	FSM	ENSMUSG00000063410.9	ENSMUST00000079817.8	2676	11	90	-2147	-43	2147	multi-exon	FALSE	canonical	3	248	junction_7	30.6098023515344	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTTGCTGTGTCTCG	7393	False	NA	-17	True	AATAAA	-8	NA	121616656	121521607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_121524777_121529391_121529529_121530832_121530902_121531601_121531726_121532066_121532213_121534546_121534733_121539597_121539756_121540158_121540268_121545426_121545484_121574833_121575065_121616309
ENSMUSG00000063410.9_19	chr14	-	2280	1	Genic_Genomic	ENSMUSG00000063410.9	novel	NA	NA	NA	NA	17005	2152	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCTGTGTCTCGTGTTG	NA	False	NA	-12	True	AATAAA	-13	NA	121523882	121521602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_-_121521600_121523900
ENSMUSG00000063412.5_0	chr8	-	727	1	FSM	ENSMUSG00000063412.5	ENSMUST00000080152.5	736	1	11	-2	11	2	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTATTTTCAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	34578880	34578153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_34578200_34578900
ENSMUSG00000063428.9_1	chr10	+	2495	5	FSM	ENSMUSG00000063428.9	ENSMUST00000019977.8	3000	5	2	503	2	-503	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAGTCTTACGATTGGCC	NA	False	NA	NA	False	AATAAA	-18	NA	40506008	40525424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_40506088_40507601_40507777_40508933_40509043_40513340_40513518_40523469
ENSMUSG00000063430.10_14	chr5	+	2741	6	ISM	ENSMUSG00000063430.10	ENSMUST00000094452.4	4302	9	60681	8	-9986	-1	3prime_fragment	FALSE	canonical	3	32	junction_4	7.81280999384984	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGCTGCCCAGTTGTG	NA	False	NA	6	True	ATTAAA	-16	NA	113698993	113727778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_113699147_113708697_113708820_113710299_113710475_113712079_113712245_113715323_113715525_113725853
ENSMUSG00000063430.10_15	chr5	+	1520	1	ISM	ENSMUSG00000063430.10	ENSMUST00000094452.4	4302	9	87947	7	9411	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGGCTGCCCAGTTGTGT	8864	False	NA	7	True	ATTAAA	-17	NA	113726259	113727779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_113726300_113727800
ENSMUSG00000063430.10_2	chr5	+	4039	9	FSM	ENSMUSG00000063430.10	ENSMUST00000094452.4	4302	9	256	7	-49	0	multi-exon	FALSE	canonical	2	3	junction_1	15.7276627316331	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGGCTGCCCAGTTGTGT	NA	False	NA	7	True	ATTAAA	-17	NA	113638568	113727779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_113638807_113688483_113689396_113696409_113696525_113698961_113699147_113708697_113708820_113710299_113710475_113712079_113712245_113715323_113715525_113725853
ENSMUSG00000063430.10_3	chr5	+	3239	8	ISM	ENSMUSG00000063430.10	ENSMUST00000094452.4	4302	9	50733	7	1000	0	3prime_fragment	FALSE	canonical	3	32	junction_6	7.59430506285829	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGGCTGCCCAGTTGTGT	NA	False	NA	7	True	ATTAAA	-17	NA	113689045	113727779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_113689396_113696409_113696525_113698961_113699147_113708697_113708820_113710299_113710475_113712079_113712245_113715323_113715525_113725853
ENSMUSG00000063430.10_4	chr5	+	3847	7	ISM	ENSMUSG00000063430.10	ENSMUST00000094452.4	4302	9	50733	9728	1000	-1869	internal_fragment	FALSE	canonical	3	32	junction_6	8.1325819325039	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTCTCAAGCAGCCG	NA	False	NA	NA	False	NA	NA	NA	113689045	113718058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_113689396_113696409_113696525_113698961_113699147_113708697_113708820_113710299_113710475_113712079_113712245_113715323
ENSMUSG00000063439.8_0	chr7	+	979	4	FSM	ENSMUSG00000063439.8	ENSMUST00000205658.2	995	4	16	0	16	0	multi-exon	FALSE	canonical	3	77	junction_2	1.69967317119759	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTGCCTCCTTGTATC	NA	False	NA	8	True	AATAAA	-19	NA	25380220	25385983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_25380404_25380807_25380900_25382715_25382842_25385405
ENSMUSG00000063445.15_0	chr16	-	1179	5	FSM	ENSMUSG00000063445.15	ENSMUST00000120056.8	2440	5	0	1261	0	-3	multi-exon	FALSE	canonical	3	167	junction_4	12.1243556529821	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGTTTCCCAAAAGAAA	4843	False	NA	-9	True	AATAAA	-15	NA	4536973	4529183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4534160_4534400_4536758
ENSMUSG00000063445.15_1	chr16	-	5433	2	FSM	ENSMUSG00000063445.15	ENSMUST00000125140.2	921	2	5	-4517	5	9	multi-exon	FALSE	canonical	3	167	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAAAGGCCTCTGTCT	4853	False	NA	3	True	AATAAA	-27	NA	4536963	4529171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_4534400_4536758
ENSMUSG00000063445.15_6	chr16	-	1125	4	ISM	ENSMUSG00000063445.15	ENSMUST00000074970.8	1155	5	1	1117	1	1097	5prime_fragment	FALSE	canonical	3	167	junction_3	9.79795897113271	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCTGGCTAGGTTTTTTT	4841	False	NA	NA	False	NA	NA	NA	4536975	4531275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_4531695_4532280_4532531_4534160_4534400_4536758
ENSMUSG00000063450.15_13	chr12	+	4450	22	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	13059	3	1963	-3	3prime_fragment	FALSE	canonical	1	4	junction_1	6.81468335999936	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	3559	False	NA	NA	False	AAGAAA	-40	NA	76108410	76157671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76108597_76110866_76111062_76113286_76113413_76118901_76119058_76121211_76121371_76122515_76122683_76134524_76134688_76141054_76141243_76141815_76141967_76142265_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ENSMUSG00000063450.15_14	chr12	+	4031	19	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	23462	3	24	-3	3prime_fragment	FALSE	canonical	2	10	junction_3	5.31391139566588	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	7454	False	NA	NA	False	AAGAAA	-40	NA	76118813	76157671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76119058_76121211_76121371_76122515_76122683_76134524_76134688_76141054_76141243_76141815_76141967_76142265_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ENSMUSG00000063450.15_15	chr12	+	4072	20	ISM	ENSMUSG00000063450.15	ENSMUST00000085280.12	7335	41	40454	23	52	-3	3prime_fragment	FALSE	canonical	1	1	junction_10	7.07850712777029	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	7482	False	NA	NA	False	AAGAAA	-40	NA	76118841	76157671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76119058_76121211_76121371_76122515_76122683_76134524_76134688_76141054_76141243_76141815_76141967_76142265_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76146801_76146871_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ENSMUSG00000063450.15_19	chr12	+	3101	14	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	46469	7	-5854	-7	3prime_fragment	FALSE	canonical	3	13	junction_5	4.83821082877427	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTCATTAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-36	NA	76141820	76157667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76141967_76142265_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ENSMUSG00000063450.15_20	chr12	+	2929	13	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	46944	3	-5379	-3	3prime_fragment	FALSE	canonical	3	13	junction_4	4.72801931750143	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-40	NA	76142295	76157671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ENSMUSG00000063450.15_21	chr12	+	2777	12	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	48291	3	-4032	-3	3prime_fragment	FALSE	canonical	3	13	junction_3	4.9376274960001	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-40	NA	76143642	76157671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76143782_76144657_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ENSMUSG00000063450.15_22	chr12	+	2566	11	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	49375	6	-2948	-6	3prime_fragment	FALSE	canonical	3	13	junction_2	4.74236228055175	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTCATTAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-37	NA	76144726	76157668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ENSMUSG00000063450.15_23	chr12	+	2413	10	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	50682	3	-1641	-3	3prime_fragment	FALSE	canonical	3	13	junction_1	4.89393678789894	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-40	NA	76146033	76157671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ENSMUSG00000063450.15_28	chr12	+	3790	18	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	25860	0	2422	0	3prime_fragment	FALSE	canonical	2	10	junction_2	5.34550226486416	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9852	False	NA	NA	False	AAGAAA	-43	NA	76121211	76157674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76121371_76122515_76122683_76134524_76134688_76141054_76141243_76141815_76141967_76142265_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ENSMUSG00000063450.15_30	chr12	+	3389	16	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	39248	0	66	0	3prime_fragment	FALSE	canonical	2	10	junction_2	5.21791784782653	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-43	NA	76134599	76157674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76134688_76141054_76141243_76141815_76141967_76142265_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ENSMUSG00000063450.15_5	chr12	+	2300	11	NIC	ENSMUSG00000063450.15	novel	21704	115	NA	NA	-17117	855	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	2.72213151776324	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAGAAAAAGA	2265	False	NA	NA	False	NA	NA	NA	76051956	76075444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_76052222_76054904_76055019_76055598_76055716_76062255_76062487_76067109_76067293_76069028_76069158_76069796_76069919_76070792_76070932_76072330_76072463_76074481_76074635_76074729
ENSMUSG00000063450.15_8	chr12	+	4378	2	NIC	ENSMUSG00000063450.15	novel	7335	41	NA	NA	0	9937	intron_retention	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGTAAAAGAAAAAAAAAAA	6147	False	NA	NA	False	NA	NA	NA	76078387	76084526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_76080543_76082303
ENSMUSG00000063450.15_9	chr12	+	5650	30	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	3581	3	3581	-3	3prime_fragment	FALSE	canonical	1	4	junction_9	7.30920615725313	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-40	NA	76098932	76157671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76099044_76099500_76099632_76101542_76101748_76103536_76103717_76104250_76104380_76106205_76106361_76106455_76106601_76106924_76107020_76108361_76108597_76110866_76111062_76113286_76113413_76118901_76119058_76121211_76121371_76122515_76122683_76134524_76134688_76141054_76141243_76141815_76141967_76142265_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
ENSMUSG00000063455.17_0	chr6	-	4176	1	ISM	ENSMUSG00000063455.17	ENSMUST00000117556.8	10916	20	126600	6	20019	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAAGCTGTTCTTTGTGG	6132	False	NA	-4	True	NA	NA	NA	38104290	38100114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38100100_38104300
ENSMUSG00000063455.17_1	chr6	-	6862	20	NIC	ENSMUSG00000063455.17	novel	10968	20	NA	NA	-178	-1437	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	11.9845237228797	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTAGTTGCATTTGTTG	NA	False	NA	NA	False	AATACA	-20	NA	38231122	38104391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_38105511_38107716_38107863_38113768_38113927_38116357_38116405_38119526_38119845_38124054_38124209_38125270_38125495_38126490_38126697_38132064_38132181_38134982_38135180_38145025_38145211_38151082_38151261_38154541_38154691_38155765_38155826_38158248_38158433_38160899_38161028_38167485_38167664_38168610_38168700_38171318_38174025_38230802
ENSMUSG00000063455.17_15	chr6	-	4336	19	NIC	ENSMUSG00000063455.17	novel	10916	20	NA	NA	-506	-1437	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	5.20949986936259	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTAGTTGCATTTGTTG	NA	False	NA	NA	False	AATACA	-20	NA	38171863	38104391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_38105463_38107716_38107863_38113768_38113930_38116357_38116405_38119526_38119845_38124054_38124209_38125270_38125495_38126490_38126697_38132064_38132181_38134982_38135180_38145025_38145211_38151082_38151261_38154541_38154691_38155765_38155826_38158248_38158433_38160899_38161028_38167485_38167664_38168610_38168700_38171318
ENSMUSG00000063455.17_17	chr6	-	6695	20	FSM	ENSMUSG00000063455.17	ENSMUST00000169256.5	10968	20	-137	4410	-137	-1566	multi-exon	FALSE	canonical	2	8	junction_10	11.4859905031884	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTATGTTGGTGGTTTCA	NA	False	NA	NA	False	AATACA	-21	NA	38231081	38104520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_38105511_38107716_38107863_38113768_38113930_38116357_38116405_38119526_38119845_38124054_38124209_38125270_38125495_38126490_38126697_38132064_38132181_38134982_38135180_38145025_38145211_38151082_38151261_38154541_38154691_38155765_38155826_38158248_38158433_38160899_38161028_38167485_38167664_38168610_38168700_38171318_38174025_38230802
ENSMUSG00000063455.17_18	chr6	-	6817	20	NIC	ENSMUSG00000063455.17	novel	10968	20	NA	NA	-308	-1567	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	11.6891881289324	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTATGTTGGTGGTTTC	NA	False	NA	NA	False	AATACA	-20	NA	38231252	38104521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_38105463_38107716_38107863_38113768_38113930_38116357_38116405_38119526_38119845_38124054_38124209_38125270_38125495_38126490_38126697_38132064_38132181_38134982_38135180_38145025_38145211_38151082_38151261_38154541_38154691_38155765_38155826_38158248_38158433_38160899_38161028_38167485_38167664_38168610_38168700_38171318_38174025_38230802
ENSMUSG00000063455.17_2	chr6	-	7606	15	NIC	ENSMUSG00000063455.17	novel	10916	20	NA	NA	-12776	-11	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	6.03095755080334	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCGGTGTGGAAGCTGTTC	NA	False	NA	-11	True	NA	NA	NA	38158327	38100121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_38105511_38107716_38107863_38113768_38113927_38116357_38116405_38119526_38119845_38124054_38124209_38125270_38125495_38126490_38126697_38132064_38132181_38134982_38135180_38145025_38145211_38151082_38151261_38154541_38154691_38155765_38155826_38158248
ENSMUSG00000063455.17_4	chr6	-	5898	19	ISM	ENSMUSG00000063455.17	ENSMUST00000117556.8	10916	20	58960	2836	-573	4	3prime_fragment	FALSE	canonical	2	8	junction_10	4.85213456908846	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTAATGTCTGTCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	38171930	38102944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_38105511_38107716_38107863_38113768_38113930_38116357_38116405_38119526_38119845_38124054_38124209_38125270_38125495_38126490_38126697_38132064_38132181_38134982_38135180_38145025_38145211_38151082_38151261_38154541_38154691_38155765_38155826_38158248_38158433_38160899_38161028_38167485_38167664_38168610_38168700_38171318
ENSMUSG00000063457.15_0	chr10	+	493	4	FSM	ENSMUSG00000063457.15	ENSMUST00000068408.14	500	4	6	1	6	-1	multi-exon	FALSE	canonical	3	5732	junction_1	1157.99510649513	1244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTGGGTTTTTGTTTTTT	6348	False	NA	29	True	AATAAA	-20	NA	80128292	80129947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80128318_80128608_80128695_80129475_80129711_80129800
ENSMUSG00000063457.15_2	chr10	+	469	3	FSM	ENSMUSG00000063457.15	ENSMUST00000062674.7	572	3	129	-26	129	-1	multi-exon	FALSE	canonical	3	7729	junction_2	373	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTGGGTTTTTGTTTTTT	6663	False	NA	29	True	AATAAA	-20	NA	80128607	80129947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80128695_80129475_80129711_80129800
ENSMUSG00000063457.15_5	chr10	+	246	2	ISM	ENSMUSG00000063457.15	ENSMUST00000062674.7	572	3	1132	-25	1132	-2	3prime_fragment	FALSE	canonical	3	7729	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGGTTTTTGTTTTT	7666	False	NA	28	True	AATAAA	-19	NA	80129610	80129946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_80129711_80129800
ENSMUSG00000063480.9_0	chr15	-	1232	3	FSM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	25	820	6	133	multi-exon	FALSE	canonical	3	3045	junction_2	110	1148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAATATGGCAGCTGT	4931	False	NA	-27	True	AATAAA	-20	NA	81931774	81925545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81926570_81928097_81928219_81931687
ENSMUSG00000063480.9_2	chr15	-	719	1	ISM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	5535	820	5456	133	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAATATGGCAGCTGT	NA	False	NA	-27	True	AATAAA	-20	NA	81926264	81925545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_81925500_81926300
ENSMUSG00000063488.7_2	chr9	+	2838	6	NIC	ENSMUSG00000063488.7	novel	4722	5	NA	NA	1169	1075	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	2.92574776766556	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTTGTGTTCCACAATT	NA	False	NA	NA	False	ATTAAA	-17	NA	122715918	122725540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_122716131_122717488_122718015_122719723_122719872_122721382_122721457_122721749_122721844_122723756
ENSMUSG00000063506.15_15	chr14	+	2748	10	NIC	ENSMUSG00000063506.15	novel	711	4	NA	NA	7	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	7.21110255092798	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCATGGCGCCTGTCACC	NA	False	NA	NA	False	ATTAAA	-9	NA	32972353	33091885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_32972695_32993740_32993941_33020660_33020749_33065185_33065315_33081074_33081283_33084399_33084533_33085232_33085307_33086349_33086472_33088526_33089401_33091306
ENSMUSG00000063506.15_4	chr14	+	2337	8	NIC	ENSMUSG00000063506.15	novel	2148	6	NA	NA	12	-4	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	2.66496544373966	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCATGGCGCCTGTCACC	NA	False	NA	NA	False	ATTAAA	-9	NA	33041671	33091885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_33041890_33065185_33065315_33081074_33081283_33084399_33084533_33085232_33085307_33086349_33086472_33088526_33089401_33091306
ENSMUSG00000063506.15_8	chr14	+	2141	7	NIC	ENSMUSG00000063506.15	novel	2148	6	NA	NA	27	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	7.42555646998182	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCATGGCGCCTGTCACC	NA	False	NA	NA	False	ATTAAA	-9	NA	33041686	33091885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_33041890_33081074_33081283_33084399_33084481_33085232_33085307_33086349_33086472_33088526_33089401_33091306
ENSMUSG00000063511.12_1	chr7	-	535	1	ISM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	18746	9	4321	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTGGGCATGTGATGTCT	1529	False	NA	-9	True	AATAAA	-16	NA	45026420	45025885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45025900_45026400
ENSMUSG00000063511.12_14	chr7	-	4041	10	FSM	ENSMUSG00000063511.12	ENSMUST00000211366.2	4008	10	-33	0	1	0	multi-exon	FALSE	canonical	3	95	junction_3	443.86935014709	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTGGGCATGTGATGTCT	9092	False	NA	-9	True	AATAAA	-16	NA	45045115	45025885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45026703_45026779_45026868_45030140_45032609_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ENSMUSG00000063511.12_2	chr7	-	1676	10	FSM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	50	9	0	0	multi-exon	FALSE	canonical	3	1192	junction_9	143.840189098875	1455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTGGGCATGTGATGTCT	9091	False	NA	-9	True	AATAAA	-16	NA	45045116	45025885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ENSMUSG00000063511.12_4	chr7	-	2144	3	ISM	ENSMUSG00000063511.12	ENSMUST00000209993.2	707	9	10366	-684	-638	0	3prime_fragment	FALSE	canonical	3	1406	junction_2	27	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTGGGCATGTGATGTCT	NA	False	NA	-9	True	AATAAA	-16	NA	45031379	45025885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_45026703_45026779_45026868_45030140
ENSMUSG00000063524.14_0	chr4	+	1764	12	FSM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	256	7	-32	-1	multi-exon	FALSE	canonical	3	2891	junction_9	3966.2265098293	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTGCTGGGCATCTC	NA	False	NA	-2	True	AATAAA	-15	NA	150321664	150333329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063524.14_3	chr4	+	1729	12	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	5183.00895568498	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTGCTGGGCATCTC	NA	False	NA	-2	True	AATAAA	-15	NA	150321698	150333329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329572_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063531.8_0	chr5	+	4301	17	FSM	ENSMUSG00000063531.8	ENSMUST00000073957.8	6861	17	46	2514	46	-139	multi-exon	FALSE	canonical	0	0	junction_1	1.82752393965168	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGATTTCTTTTTCTGTC	NA	False	NA	NA	False	TATAAA	-16	NA	14075335	14304189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_14076039_14193887_14194049_14212201_14212262_14214072_14214193_14260304_14260399_14274300_14274421_14275566_14275710_14276429_14276545_14276648_14276719_14280120_14280266_14282008_14282232_14283638_14283731_14286055_14286098_14286280_14286448_14290583_14290652_14290976_14291117_14302351
ENSMUSG00000063535.8_0	chr7	-	3642	1	NIC	ENSMUSG00000063535.8	novel	4073	4	NA	NA	6002	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGAACTGGTGGTTGCG	3024	False	NA	NA	False	NA	NA	NA	7133721	7130079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_7130100_7133700
ENSMUSG00000063535.8_2	chr7	-	3011	4	FSM	ENSMUSG00000063535.8	ENSMUST00000032622.9	3028	4	11	6	11	-6	multi-exon	TRUE	canonical	3	13	junction_1	4.32049379893857	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGAACTGGTGGTTGCG	NA	False	NA	NA	False	NA	NA	NA	7139743	7133679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_7136168_7137165_7137250_7138290_7138418_7139431
ENSMUSG00000063535.8_3	chr7	-	5044	2	ISM	ENSMUSG00000063535.8	ENSMUST00000032622.9	3028	4	33	6	2	-6	intron_retention	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGAACTGGTGGTTGCG	NA	False	NA	NA	False	NA	NA	NA	7139721	7133679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_7136168_7137165
ENSMUSG00000063550.9_0	chr7	-	6607	33	NIC	ENSMUSG00000063550.9	novel	6694	33	NA	NA	2	-8	combination_of_known_junctions	TRUE	canonical	3	48	junction_9	39.344581504319	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATTCCTGGTGGTATT	9998	False	NA	-14	True	AATAAA	-12	NA	101859355	101768612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
ENSMUSG00000063550.9_12	chr7	-	6466	32	NIC	ENSMUSG00000063550.9	novel	6694	33	NA	NA	2	-8	combination_of_known_splicesites	FALSE	canonical	3	33	junction_21	43.133097499437	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATTCCTGGTGGTATT	9998	False	NA	-14	True	AATAAA	-12	NA	101859355	101768612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
ENSMUSG00000063550.9_32	chr7	-	4028	23	FSM	ENSMUSG00000063550.9	ENSMUST00000211235.2	3748	23	-6	-274	2	-1	multi-exon	FALSE	canonical	3	124	junction_13	14.0777064247632	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAACATCTCAGGAAAATC	9998	False	NA	-6	True	AATAAA	-14	NA	101859355	101783410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
ENSMUSG00000063550.9_37	chr7	-	3883	22	NIC	ENSMUSG00000063550.9	novel	3748	23	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	33	junction_11	29.4626093799229	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAACATCTCAGGAAAATC	10002	False	NA	-6	True	AATAAA	-14	NA	101859351	101783410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
ENSMUSG00000063550.9_38	chr7	-	4085	23	FSM	ENSMUSG00000063550.9	ENSMUST00000070165.7	4052	23	-31	-2	-1	2	multi-exon	FALSE	canonical	3	19	junction_13	31.0306766371922	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATCTCAGGAAAATCCAT	9995	False	NA	-3	True	AATAAA	-17	NA	101859358	101783407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
ENSMUSG00000063550.9_39	chr7	-	4016	23	NIC	ENSMUSG00000063550.9	novel	3748	23	NA	NA	12	1	combination_of_known_junctions	FALSE	canonical	3	26	junction_22	30.1171610287184	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACATCTCAGGAAAATCCA	9991	False	NA	-4	True	AATAAA	-16	NA	101859062	101783408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101858945
ENSMUSG00000063550.9_8	chr7	-	6658	33	FSM	ENSMUSG00000063550.9	ENSMUST00000210682.2	6694	33	28	8	2	-8	multi-exon	FALSE	canonical	3	19	junction_23	43.7886324967736	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATTCCTGGTGGTATT	9998	False	NA	-14	True	AATAAA	-12	NA	101859355	101768612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
ENSMUSG00000063556.6_0	chr14	-	522	1	FSM	ENSMUSG00000063556.6	ENSMUST00000099431.6	468	1	-11	-43	-11	43	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACCATAAAAAAAAAAAAAAT	NA	False	NA	NA	False	AATATA	-11	NA	77489765	77489243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_77489200_77489800
ENSMUSG00000063568.12_0	chr6	-	2881	5	FSM	ENSMUSG00000063568.12	ENSMUST00000074541.6	2203	5	42	-720	42	720	multi-exon	FALSE	canonical	0	0	junction_3	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAAAATAAATATGGCTC	NA	False	NA	NA	False	AATAAA	-37	NA	53045574	52745061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_52747366_52754519_52754690_52789087_52789285_52870983_52871057_53045437
ENSMUSG00000063576.13_4	chr17	-	2009	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	87	4	-14	-1	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACGTGTCCTATTTCTGG	NA	False	NA	-4	True	TATAAA	-13	NA	46991743	46985479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
ENSMUSG00000063576.13_5	chr17	-	1670	10	ISM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	2481	4	1943	-1	3prime_fragment	FALSE	canonical	3	376	junction_8	32.5238753708073	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACGTGTCCTATTTCTGG	NA	False	NA	-4	True	TATAAA	-13	NA	46989349	46985479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206
ENSMUSG00000063576.13_7	chr17	-	1929	12	NIC	ENSMUSG00000063576.13	novel	2100	12	NA	NA	-11	-1	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	123.384435842875	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACGTGTCCTATTTCTGG	NA	False	NA	-4	True	TATAAA	-13	NA	46991303	46985479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991267
ENSMUSG00000063576.13_8	chr17	-	1861	11	FSM	ENSMUSG00000063576.13	ENSMUST00000165007.9	1954	11	92	1	-19	-1	multi-exon	FALSE	canonical	3	47	junction_10	118.520082686438	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACGTGTCCTATTTCTGG	NA	False	NA	-4	True	TATAAA	-13	NA	46991748	46985479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46991627
ENSMUSG00000063605.6_0	chr8	-	2236	9	FSM	ENSMUSG00000063605.6	ENSMUST00000077955.6	2304	9	66	2	66	-2	multi-exon	FALSE	canonical	2	7	junction_8	3.67423461417477	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCAGAGTTCTGAAAGTG	NA	False	NA	-2	True	AATAAA	-17	NA	95644660	95629498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_95630020_95631884_95631989_95632559_95632731_95634342_95634553_95634901_95635019_95636371_95636481_95638055_95638283_95639710_95640437_95644609
ENSMUSG00000063605.6_1	chr8	-	1704	8	ISM	ENSMUSG00000063605.6	ENSMUST00000077955.6	2304	9	4771	2	4194	-2	3prime_fragment	FALSE	canonical	2	12	junction_2	2.72554057547699	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCAGAGTTCTGAAAGTG	NA	False	NA	-2	True	AATAAA	-17	NA	95639955	95629498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_95630020_95631884_95631989_95632559_95632731_95634342_95634553_95634901_95635019_95636371_95636481_95638055_95638283_95639710
ENSMUSG00000063605.6_3	chr8	-	2379	9	NIC	ENSMUSG00000063605.6	novel	2304	9	NA	NA	4	-4	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	4.99843725578305	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGGCAGAGTTCTGAAAG	NA	False	NA	-4	True	AATAAA	-15	NA	95644145	95629500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_95630020_95631884_95631989_95632559_95632731_95634342_95634553_95634901_95635019_95636371_95636481_95638055_95638283_95639710_95640437_95643949
ENSMUSG00000063611.6_0	chr2	+	1467	1	FSM	ENSMUSG00000063611.6	ENSMUST00000238539.2	1675	1	208	0	208	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGCCTTGGTCATGT	NA	False	NA	8	True	NA	NA	NA	28396318	28397785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_28396300_28397800
ENSMUSG00000063626.7_0	chr8	-	3153	5	ISM	ENSMUSG00000063626.7	ENSMUST00000211448.2	3087	15	524833	-2031	524833	2018	3prime_fragment	FALSE	canonical	0	0	junction_1	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTCCTGGCATCTGTGT	NA	False	NA	NA	False	TATAAA	-16	NA	29184622	29140421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_29143001_29156793_29156973_29165302_29165468_29173130_29173281_29184542
ENSMUSG00000063632.7_0	chr12	-	1035	1	FSM	ENSMUSG00000063632.7	ENSMUST00000079063.7	8311	1	5168	2108	5168	-2108	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	27387405	27386370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_27386400_27387400
ENSMUSG00000063632.7_1	chr12	-	2894	1	FSM	ENSMUSG00000063632.7	ENSMUST00000079063.7	8311	1	-129	5546	-129	-5546	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTAGCAAATGGTGGCGAA	NA	False	NA	NA	False	AATAAA	-17	NA	27392702	27389808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_27389800_27392700
ENSMUSG00000063646.19_0	chr5	+	1410	3	FSM	ENSMUSG00000063646.19	ENSMUST00000173836.8	849	3	1	-562	1	-20	multi-exon	FALSE	canonical	3	99	junction_1	10.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	37185679	37249353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_37185944_37242579_37242843_37248470
ENSMUSG00000063646.19_14	chr5	+	2433	13	NIC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	-59	-4	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	48.6269101310055	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTGCCTTTTTTATT	NA	False	NA	13	True	AATAAA	-16	NA	37204716	37282639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_37204890_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ENSMUSG00000063646.19_2	chr5	+	2524	13	NIC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	99	junction_1	26.6327909832138	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTGCCTTTTTTATT	NA	False	NA	13	True	AATAAA	-16	NA	37185679	37282639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_37185944_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ENSMUSG00000063652.11_8	chr11	-	3315	9	NIC	ENSMUSG00000063652.11	novel	3461	10	NA	NA	0	-10	combination_of_known_junctions	FALSE	canonical	1	1	junction_7	1.5612494995996	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAAATAAATAATAG	NA	False	NA	NA	False	AATAAA	-9	NA	53871158	53840800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_53842182_53843826_53844010_53845513_53845729_53846810_53846921_53848799_53848927_53850029_53850202_53851108_53851264_53860325_53860430_53870290
ENSMUSG00000063659.12_0	chr1	+	3939	2	FSM	ENSMUSG00000063659.12	ENSMUST00000195002.2	394	2	-23	-3522	-23	-1	multi-exon	FALSE	canonical	3	20	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATTCCTTGTGTGCTTT	NA	False	NA	2	True	AATAAA	-12	NA	177269893	177278325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_177270162_177274654
ENSMUSG00000063659.12_2	chr1	+	3823	3	NIC	ENSMUSG00000063659.12	novel	646	3	NA	NA	-20	-2	combination_of_known_junctions	FALSE	canonical	3	15	junction_2	2.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAATTCCTTGTGTGCTT	NA	False	NA	1	True	AATAAA	-11	NA	177269896	177278324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_177270162_177274654_177275343_177275454
ENSMUSG00000063659.12_4	chr1	+	3935	4	NIC	ENSMUSG00000063659.12	novel	335	4	NA	NA	-10	2	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	6.59966329107444	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTTGTGTGCTTTTTG	NA	False	NA	5	True	AATAAA	-15	NA	177269906	177278328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_177270162_177270789_177270908_177274654_177275343_177275454
ENSMUSG00000063659.12_7	chr1	+	4270	2	FSM	ENSMUSG00000063659.12	ENSMUST00000094276.5	4204	2	-71	5	-71	-1	multi-exon	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATTCCTTGTGTGCTTT	NA	False	NA	2	True	AATAAA	-12	NA	177271789	177278325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_177272389_177274654
ENSMUSG00000063659.12_8	chr1	+	2667	1	FSM	ENSMUSG00000063659.12	ENSMUST00000077225.8	4944	1	2273	4	2273	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATTCCTTGTGTGCTTTT	NA	False	NA	3	True	AATAAA	-13	NA	177275659	177278326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_177275700_177278300
ENSMUSG00000063659.12_9	chr1	+	3481	2	ISM	ENSMUSG00000063659.12	ENSMUST00000193480.2	3734	3	2512	7	1344	-3	3prime_fragment	FALSE	canonical	3	15	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGAATTCCTTGTGTGCT	NA	False	NA	0	True	AATAAA	-10	NA	177274730	177278323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_177275343_177275454
ENSMUSG00000063663.12_1	chrX	-	4790	1	ISM	ENSMUSG00000063663.12	ENSMUST00000150434.8	11619	41	92387	156	92379	-156	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGACAAAACTTTATTG	NA	False	NA	NA	False	ATTAAA	-6	NA	107785567	107780777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_107780800_107785600
ENSMUSG00000063663.12_10	chrX	-	8777	41	FSM	ENSMUSG00000063663.12	ENSMUST00000150434.8	11619	41	15	2827	7	2725	multi-exon	TRUE	canonical	2	5	junction_33	5.32822672190289	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACACTGTCTACCAATTA	NA	False	NA	NA	False	ATTAAA	-22	NA	107877939	107783448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_107787377_107792888_107793048_107793836_107793935_107794294_107794459_107796423_107796577_107797845_107797918_107799021_107799163_107799951_107800009_107801125_107801205_107801289_107801416_107802454_107802576_107803211_107803368_107803476_107803539_107803904_107804017_107804841_107804925_107805678_107805804_107808735_107808844_107811554_107811669_107812491_107812658_107813344_107813422_107815126_107815277_107816916_107817011_107818432_107818617_107821852_107822021_107823501_107823728_107827717_107827847_107829252_107829388_107833338_107833493_107834750_107834856_107837907_107837949_107840351_107840453_107841634_107841706_107842360_107842462_107847587_107847810_107849042_107849204_107868411_107868511_107868950_107869102_107876819_107876880_107877282_107877313_107877513_107877573_107877704
ENSMUSG00000063663.12_15	chrX	-	1895	4	ISM	ENSMUSG00000063663.12	ENSMUST00000041866.12	5839	39	83626	-377	83594	377	3prime_fragment	FALSE	canonical	3	10	junction_2	7.36357401145817	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTTCTTGCATCCATT	NA	False	NA	0	True	ATTAAA	-43	NA	107794352	107785796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_107787377_107792888_107793048_107793836_107793935_107794294
ENSMUSG00000063672.8_0	chr8	+	1964	3	FSM	ENSMUSG00000063672.8	ENSMUST00000071588.8	2238	3	-38	312	-38	-312	multi-exon	FALSE	canonical	1	1	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCCGCGGCTCCTGCACT	NA	False	NA	NA	False	AATAAA	-20	NA	23643246	23648652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_23643986_23646216_23646387_23647597
ENSMUSG00000063683.13_0	chr19	+	192	1	Genic_Genomic	ENSMUSG00000063683.13	novel	NA	NA	NA	NA	14244	16	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCTTTTCAAAAAAGAAATA	3438	False	NA	NA	False	AATAAA	-4	NA	12631099	12631291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_12631100_12631300
ENSMUSG00000063684.10_0	chr2	+	1713	1	FSM	ENSMUSG00000063684.10	ENSMUST00000121752.2	1428	1	206	-491	206	491	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAGA	8385	False	NA	NA	False	AATAAA	-11	NA	108779356	108781069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_108779400_108781100
ENSMUSG00000063694.6_0	chr6	-	570	3	FSM	ENSMUSG00000063694.6	ENSMUST00000161401.2	3123	3	64	2489	64	185	multi-exon	FALSE	canonical	3	4909	junction_2	335	1585	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATGCTACCACGGCTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	50543454	50542031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_50542366_50542471_50542649_50543395
ENSMUSG00000063696.8_0	chr8	-	1092	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	-73	-65	-73	65	mono-exon	FALSE	NA	NA	NA	NA	NA	341	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	103592503	103591411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_103591400_103592500
ENSMUSG00000063698.10_2	chr19	-	1230	14	FSM	ENSMUSG00000063698.10	ENSMUST00000135808.8	1309	14	64	15	9	-5	multi-exon	FALSE	canonical	3	10	junction_12	6.9961950774782	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACTTGAAAGAAATCATC	NA	False	NA	NA	False	AATAAA	-15	NA	60849853	60827200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60840449_60840529_60842124_60842191_60842301_60842359_60842444_60842499_60844264_60844291_60845647_60845703_60845787_60845815_60847101_60847177_60848466_60848533_60849736
ENSMUSG00000063698.10_4	chr19	-	1136	13	NIC	ENSMUSG00000063698.10	novel	1309	14	NA	NA	28	-5	combination_of_known_splicesites	FALSE	canonical	3	13	junction_11	6.73094016876956	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACTTGAAAGAAATCATC	NA	False	NA	NA	False	AATAAA	-15	NA	60849834	60827200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60840449_60840529_60842124_60842191_60842301_60842359_60842444_60842499_60844264_60844291_60845647_60845703_60845787_60845815_60848466_60848533_60849736
ENSMUSG00000063714.16_0	chr2	+	478	3	FSM	ENSMUSG00000063714.16	ENSMUST00000123087.8	583	3	16	89	16	-19	multi-exon	FALSE	canonical	1	97	junction_1	49.5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAATGGAATGGAAAGAAG	NA	False	NA	1	True	NA	NA	NA	72809783	72818932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_72809940_72817871_72817977_72818715
ENSMUSG00000063714.16_1	chr2	+	463	3	FSM	ENSMUSG00000063714.16	ENSMUST00000146195.2	364	3	-85	-14	7	14	multi-exon	FALSE	canonical	1	21	junction_2	38	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAATAAA	NA	False	NA	-27	True	AATGAA	-23	NA	72809774	72818904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_72809940_72817871_72817977_72818711
ENSMUSG00000063728.11_1	chrX	-	1704	4	NNC	ENSMUSG00000063728.11	novel	1212	3	NA	NA	-1668	338	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	3.55902608401044	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTGAATTTATAACACTA	NA	False	NA	NA	False	NA	NA	NA	153720651	153706669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_153708120_153709022_153709112_153718972_153719075_153720588
ENSMUSG00000063760.10_0	chr10	-	979	1	ISM	ENSMUSG00000063760.10	ENSMUST00000081989.8	11013	6	115013	0	115013	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTCATGTCTTTTTTCC	NA	False	NA	NA	False	AATAAA	-15	NA	31370167	31369188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_31369200_31370200
ENSMUSG00000063760.10_1	chr10	-	2762	6	FSM	ENSMUSG00000063760.10	ENSMUST00000081989.8	11013	6	-450	8701	-450	-8701	multi-exon	FALSE	canonical	3	16	junction_4	4.8	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAACAGATTGTTTCCATG	NA	False	NA	NA	False	ATTAAA	-10	NA	31485630	31377889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_31378728_31379746_31379819_31381768_31381971_31393379_31393545_31410658_31410893_31484379
ENSMUSG00000063765.13_0	chr15	-	914	3	FSM	ENSMUSG00000063765.13	ENSMUST00000173898.2	1095	3	156	25	-23	-25	multi-exon	FALSE	canonical	3	12	junction_2	12.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAATAAAAAAAAACA	8231	False	NA	NA	False	NA	NA	NA	81578252	81570406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81570604_81576308_81576508_81577734
ENSMUSG00000063765.13_1	chr15	-	1208	4	ISM	ENSMUSG00000063765.13	ENSMUST00000072910.6	2548	6	3109	41	29	-25	3prime_fragment	FALSE	canonical	3	19	junction_3	7.87400787401181	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAATAAAAAAAAACA	8104	False	NA	NA	False	NA	NA	NA	81578379	81570406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_81570604_81576308_81576508_81577187_81577355_81577734
ENSMUSG00000063765.13_4	chr15	-	2253	3	ISM	ENSMUSG00000063765.13	ENSMUST00000072910.6	2548	6	3080	4730	0	3229	internal_fragment	FALSE	canonical	3	19	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGGTGGCCTGTGCCAT	8075	False	NA	NA	False	AATAAA	-21	NA	81578408	81575095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_81576508_81577187_81577355_81577734
ENSMUSG00000063785.13_1	chrX	+	2476	15	FSM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	27	4	-8	-4	multi-exon	FALSE	canonical	3	320	junction_8	49.1840047833705	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTCGACTACCTTCTGT	NA	False	NA	16	True	AATAAA	-20	NA	47345765	47371326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
ENSMUSG00000063785.13_15	chrX	+	1408	10	NIC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	12	-4	combination_of_known_splicesites	FALSE	canonical	3	14	junction_7	130.820015835536	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTCGACTACCTTCTGT	NA	False	NA	16	True	AATAAA	-20	NA	47345750	47371326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47367243_47367438_47367544_47367645_47370938
ENSMUSG00000063787.5_0	chr14	+	555	3	FSM	ENSMUSG00000063787.5	ENSMUST00000071215.5	616	3	53	8	1	-2	multi-exon	FALSE	canonical	3	1953	junction_1	51.5	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAAGTTGGCCATTTC	NA	False	NA	25	True	AATAAA	-8	NA	20753126	20754485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20753266_20753357_20753477_20754188
ENSMUSG00000063787.5_2	chr14	+	269	1	ISM	ENSMUSG00000063787.5	ENSMUST00000071215.5	616	3	1143	8	998	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAAGTTGGCCATTTC	NA	False	NA	25	True	AATAAA	-8	NA	20754216	20754485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_20754200_20754500
ENSMUSG00000063787.5_3	chr14	+	560	3	FSM	ENSMUSG00000063787.5	ENSMUST00000226072.2	578	3	10	8	10	-2	multi-exon	FALSE	canonical	3	132	junction_1	962	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAAGTTGGCCATTTC	NA	False	NA	25	True	AATAAA	-8	NA	20753135	20754485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20753266_20753343_20753477_20754188
ENSMUSG00000063800.6_0	chr4	-	1477	10	FSM	ENSMUSG00000063800.6	ENSMUST00000079213.6	1516	10	35	4	35	-1	multi-exon	TRUE	canonical	3	462	junction_7	44.4233283170614	404	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCTCTGGCTTTTTGTT	NA	False	NA	-12	True	ATTAAA	-16	NA	108436498	108422070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181
ENSMUSG00000063801.8_0	chr7	-	2586	1	ISM	ENSMUSG00000063801.8	ENSMUST00000075657.8	5813	6	42739	0	42686	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTGGCCATGCATTTC	NA	False	NA	-2	True	AATAAA	-14	NA	79527658	79525072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_79525100_79527700
ENSMUSG00000063801.8_1	chr7	-	1354	6	FSM	ENSMUSG00000063801.8	ENSMUST00000075657.8	5813	6	19	4440	19	2746	multi-exon	FALSE	canonical	3	250	junction_1	30.5653398476117	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGAAGGTTCAGTGCTG	NA	False	NA	-8	True	AATACA	-13	NA	79570378	79529512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
ENSMUSG00000063801.8_2	chr7	-	5066	7	NNC	ENSMUSG00000063801.8	novel	5813	6	NA	NA	18	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	114.726365273589	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACCCCTCTGTGGCCAT	NA	False	NA	-9	True	AATAAA	-7	NA	79570379	79525079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_79527736_79528457_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
ENSMUSG00000063802.6_0	chr7	-	1468	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	38	3	combination_of_known_junctions	FALSE	canonical	3	210	junction_7	116.504882966775	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGCTGTCTTGCATTGTT	NA	False	NA	-4	True	AATAAA	-19	NA	4687942	4663516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687566_4687892
ENSMUSG00000063802.6_1	chr7	-	1478	8	FSM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	119	-4	32	4	multi-exon	FALSE	canonical	3	115	junction_7	148.934720667842	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTGTCTTGCATTGTTT	NA	False	NA	-3	True	AATAAA	-20	NA	4687948	4663515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687569_4687892
ENSMUSG00000063802.6_2	chr7	-	1391	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	32	4	combination_of_known_junctions	FALSE	canonical	3	78	junction_7	161.654708864169	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTGTCTTGCATTGTTT	NA	False	NA	-3	True	AATAAA	-20	NA	4687948	4663515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687482_4687892
ENSMUSG00000063802.6_3	chr7	-	1423	7	ISM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	497	-3	90	3	3prime_fragment	FALSE	canonical	3	470	junction_6	31.2663290671184	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGCTGTCTTGCATTGTT	NA	False	NA	-4	True	AATAAA	-19	NA	4687570	4663516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270
ENSMUSG00000063804.9_0	chr10	-	3014	1	ISM	ENSMUSG00000063804.9	ENSMUST00000079390.7	5402	5	90555	13	90555	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGGGTTTGGAGATATT	NA	False	NA	-13	True	AATAAA	-20	NA	45255742	45252728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_45252700_45255700
ENSMUSG00000063804.9_1	chr10	-	5489	6	NIC	ENSMUSG00000063804.9	novel	5402	5	NA	NA	-33	-13	combination_of_known_splicesites	FALSE	canonical	3	50	junction_3	6.46838465151849	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGGGTTTGGAGATATT	NA	False	NA	-13	True	AATAAA	-20	NA	45362524	45252728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_45257528_45295232_45295305_45296619_45296805_45345132_45345315_45352443_45352493_45362322
ENSMUSG00000063804.9_18	chr10	-	2757	4	NIC	ENSMUSG00000063804.9	novel	2902	4	NA	NA	-33	3	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	24.5130350811336	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAAATCTTGGATCTGG	NA	False	NA	NA	False	AATAAA	-13	NA	45362524	45332675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_45335000_45345132_45345315_45352443_45352493_45362322
ENSMUSG00000063804.9_2	chr10	-	5430	5	FSM	ENSMUSG00000063804.9	ENSMUST00000079390.7	5402	5	-41	13	-41	-13	multi-exon	FALSE	canonical	3	19	junction_4	19.8368344248774	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGGGTTTGGAGATATT	NA	False	NA	-13	True	AATAAA	-20	NA	45346338	45252728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_45257528_45295232_45295305_45296619_45296805_45345132_45345315_45346146
ENSMUSG00000063808.15_0	chr7	-	3042	20	FSM	ENSMUSG00000063808.15	ENSMUST00000079693.12	3065	20	15	8	-4	0	multi-exon	FALSE	canonical	3	140	junction_17	13.3084023611853	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGCTTCTTGA	NA	False	NA	NA	False	ATTAAA	-10	NA	35017850	34975968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_34976237_34980756_34980906_34982995_34983094_34984140_34984249_34986547_34986762_34987941_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007765_35008725_35008812_35009864_35010000_35017765
ENSMUSG00000063808.15_3	chr7	-	3033	20	NIC	ENSMUSG00000063808.15	novel	3065	20	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_17	36.8645796112867	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGCTTCTTGA	NA	False	NA	NA	False	ATTAAA	-10	NA	35017849	34975968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_34976237_34980756_34980906_34982995_34983094_34984140_34984249_34986547_34986762_34987941_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007757_35008725_35008812_35009864_35010000_35017765
ENSMUSG00000063810.8_12	chr6	+	2619	6	ISM	ENSMUSG00000063810.8	ENSMUST00000213058.2	11163	23	40271	34598	-11546	-1683	internal_fragment	FALSE	canonical	3	36	junction_4	5.34415568635495	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTACTTATGAATATCAT	NA	False	NA	NA	False	AATAAA	-11	NA	85604898	85645022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_85606697_85618300_85618531_85620139_85620266_85628244_85628401_85633376_85633512_85644848
ENSMUSG00000063810.8_13	chr6	+	4584	7	ISM	ENSMUSG00000063810.8	ENSMUST00000213058.2	11163	23	40464	22841	-11353	10074	internal_fragment	FALSE	canonical	3	36	junction_4	4.92442890089805	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTGTTCTCAAAAATATT	NA	False	NA	NA	False	AATAAA	-14	NA	85605091	85656779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_85606697_85618300_85618531_85620139_85620266_85628244_85628401_85633376_85633512_85644848_85644939_85654537
ENSMUSG00000063810.8_15	chr6	+	2642	12	ISM	ENSMUSG00000063810.8	ENSMUST00000213058.2	11163	23	55571	-113	-3513	-2	3prime_fragment	FALSE	canonical	3	27	junction_11	9.68427198951693	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGCTTAGTCCCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	85620198	85679733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_85620266_85628244_85628401_85633376_85633512_85644848_85644939_85654537_85655692_85671815_85671934_85673074_85673279_85673557_85673800_85674294_85674449_85675139_85675204_85678653_85678754_85679575
ENSMUSG00000063810.8_18	chr6	+	1707	8	ISM	ENSMUSG00000063810.8	ENSMUST00000213058.2	11163	23	90397	-113	11360	-2	3prime_fragment	FALSE	canonical	3	27	junction_7	11.5440593433354	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGCTTAGTCCCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	85655024	85679733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_85655692_85671815_85671934_85673074_85673279_85673557_85673800_85674294_85674449_85675139_85675204_85678653_85678754_85679575
ENSMUSG00000063810.8_19	chr6	+	912	6	ISM	ENSMUSG00000063810.8	ENSMUST00000213058.2	11163	23	108458	-114	29421	-1	3prime_fragment	FALSE	canonical	3	27	junction_5	12.1260051129793	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCAGCTTAGTCCCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	85673085	85679734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_85673279_85673557_85673800_85674294_85674449_85675139_85675204_85678653_85678754_85679575
ENSMUSG00000063810.8_20	chr6	+	2963	2	ISM	ENSMUSG00000063810.8	ENSMUST00000213058.2	11163	23	111321	-113	32284	-2	3prime_fragment	FALSE	canonical	3	27	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGCTTAGTCCCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	85675948	85679733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_85678754_85679575
ENSMUSG00000063810.8_21	chr6	+	11323	23	FSM	ENSMUSG00000063810.8	ENSMUST00000213058.2	11163	23	-49	-111	-49	-4	multi-exon	FALSE	canonical	3	14	junction_3	14.0492051479525	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGTCAGCTTAGTCCCT	NA	False	NA	NA	False	AATAAA	-13	NA	85564578	85679731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_85565009_85576826_85576953_85578180_85578374_85584453_85584575_85585967_85587515_85587799_85587919_85592229_85592390_85596415_85600184_85601565_85601700_85604900_85606697_85618300_85618531_85620139_85620266_85628244_85628401_85633376_85633512_85644848_85644939_85654537_85655692_85671815_85671934_85673074_85673279_85673557_85673800_85674294_85674449_85675139_85675204_85678653_85678754_85679575
ENSMUSG00000063810.8_7	chr6	+	6152	16	ISM	ENSMUSG00000063810.8	ENSMUST00000213058.2	11163	23	34265	-113	-17552	-2	3prime_fragment	FALSE	canonical	3	22	junction_1	11.4902857521763	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGCTTAGTCCCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	85598892	85679733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_85600184_85601565_85601700_85604900_85606697_85618300_85618531_85620139_85620266_85628244_85628401_85633376_85633512_85644848_85644939_85654537_85655692_85671815_85671934_85673074_85673279_85673557_85673800_85674294_85674449_85675139_85675204_85678653_85678754_85679575
ENSMUSG00000063810.8_9	chr6	+	6015	15	NIC	ENSMUSG00000063810.8	novel	9986	23	NA	NA	-17506	-3	combination_of_known_splicesites	FALSE	canonical	2	5	junction_7	15.1018650017345	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTCAGCTTAGTCCCTG	NA	False	NA	NA	False	AATAAA	-14	NA	85598938	85679732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_85600184_85601565_85601700_85604900_85606697_85618300_85618531_85620139_85620266_85628244_85628401_85633376_85633512_85654537_85655692_85671815_85671934_85673074_85673279_85673557_85673800_85674294_85674449_85675139_85675204_85678653_85678754_85679575
ENSMUSG00000063838.7_0	chr7	-	728	3	FSM	ENSMUSG00000063838.7	ENSMUST00000076831.7	1025	3	293	4	-28	-4	multi-exon	FALSE	canonical	3	137	junction_2	5.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTGTCTATTCACTTT	NA	False	NA	-3	True	CATAAA	-18	NA	4167566	4154262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4154787_4167091_4167187_4167457
ENSMUSG00000063838.7_1	chr7	-	696	2	FSM	ENSMUSG00000063838.7	ENSMUST00000140410.2	362	2	178	-512	178	-4	multi-exon	FALSE	canonical	3	148	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTGTCTATTCACTTT	NA	False	NA	-3	True	CATAAA	-18	NA	4167263	4154262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4154787_4167091
ENSMUSG00000063849.7_0	chr9	-	1652	7	FSM	ENSMUSG00000063849.7	ENSMUST00000216365.2	1665	7	12	1	1	-1	multi-exon	FALSE	canonical	3	110	junction_2	15.2059929706094	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGACTGTGTCCTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	57347378	57321244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
ENSMUSG00000063849.7_1	chr9	-	1434	7	FSM	ENSMUSG00000063849.7	ENSMUST00000085709.6	2744	7	1	1309	1	-1	multi-exon	FALSE	canonical	3	27	junction_2	42.49607825043	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGACTGTGTCCTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	57347378	57321244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_57322010_57322368_57322538_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
ENSMUSG00000063849.7_11	chr9	-	1627	6	ISM	ENSMUSG00000063849.7	ENSMUST00000216365.2	1665	7	2624	1	0	-1	3prime_fragment	FALSE	canonical	3	110	junction_2	14.3303872941383	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGACTGTGTCCTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	57344766	57321244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699
ENSMUSG00000063849.7_16	chr9	-	1901	8	NIC	ENSMUSG00000063849.7	novel	1665	7	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	54.2157443809039	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGACTGTGTCCTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	57347378	57321244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57346396_57346646_57347352
ENSMUSG00000063849.7_29	chr9	-	1423	5	NIC	ENSMUSG00000063849.7	novel	1665	7	NA	NA	-2	-3	combination_of_known_splicesites	FALSE	canonical	2	8	junction_2	57.2996509587973	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGGAGACTGTGTCCTTCT	NA	False	NA	-7	True	AATAAA	-14	NA	57347376	57321246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57322010_57322368_57322756_57342185_57342369_57344699_57344766_57347352
ENSMUSG00000063849.7_5	chr9	-	2559	7	NIC	ENSMUSG00000063849.7	novel	1665	7	NA	NA	45	-1	combination_of_known_junctions	FALSE	canonical	3	34	junction_6	40.1306892816735	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGACTGTGTCCTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	57347329	57321244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57346396
ENSMUSG00000063856.9_0	chr9	+	845	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	222	5	0	-5	multi-exon	FALSE	canonical	3	8868	junction_1	0	2308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATTGTTTGTGTGTCCTG	NA	False	NA	13	True	AATAAA	-13	NA	108216474	108217537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_108216758_108216975
ENSMUSG00000063870.13_0	chr6	+	6468	39	FSM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	184	0	3	0	multi-exon	FALSE	canonical	3	85	junction_8	111.644804298587	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTAGTGATCTGGTTCTG	1792	False	NA	8	True	AATAAA	-12	NA	125073127	125107548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079433_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ENSMUSG00000063870.13_1	chr6	+	6514	39	FSM	ENSMUSG00000063870.13	ENSMUST00000056889.15	6697	39	177	6	-4	0	multi-exon	FALSE	canonical	3	138	junction_8	108.606041087339	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTAGTGATCTGGTTCTG	1785	False	NA	8	True	AATAAA	-12	NA	125073120	125107548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ENSMUSG00000063870.13_112	chr6	+	4172	25	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	11366	6	-6013	0	3prime_fragment	FALSE	canonical	3	287	junction_2	73.1123089651956	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTAGTGATCTGGTTCTG	1059	False	NA	8	True	AATAAA	-12	NA	125084490	125107548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ENSMUSG00000063870.13_140	chr6	+	2806	16	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	17824	2	417	-2	3prime_fragment	FALSE	canonical	3	357	junction_2	56.122326711885	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGATCTGGTTCTGTGTG	7517	False	NA	12	True	AATAAA	-16	NA	125090948	125107552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ENSMUSG00000063870.13_149	chr6	+	2415	14	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	24107	1	502	-1	3prime_fragment	FALSE	canonical	3	410	junction_5	46.734045469199	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATCTGGTTCTGTGTGG	138	False	NA	13	True	AATAAA	-17	NA	125097231	125107553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ENSMUSG00000063870.13_2	chr6	+	6528	39	FSM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	3	6	3	0	multi-exon	FALSE	canonical	3	54	junction_3	116.234542355382	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTAGTGATCTGGTTCTG	1792	False	NA	8	True	AATAAA	-12	NA	125073127	125107548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ENSMUSG00000063870.13_87	chr6	+	5055	30	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	6691	2	6284	-2	3prime_fragment	FALSE	canonical	3	227	junction_1	85.0618016915669	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGATCTGGTTCTGTGTG	8480	False	NA	12	True	AATAAA	-16	NA	125079815	125107552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ENSMUSG00000063870.13_95	chr6	+	4566	28	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	9115	6	-8264	0	3prime_fragment	FALSE	canonical	3	287	junction_5	75.2408478499889	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTAGTGATCTGGTTCTG	NA	False	NA	8	True	AATAAA	-12	NA	125082239	125107548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ENSMUSG00000063882.13_0	chr4	-	510	4	FSM	ENSMUSG00000063882.13	ENSMUST00000078676.6	547	4	36	1	-1	0	multi-exon	FALSE	canonical	3	1017	junction_2	25.9272486435067	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTTGTCCTTCCTTTGC	7693	False	NA	-8	True	AATAAA	-16	NA	115932232	115924162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_115924370_115927059_115927222_115927933_115927955_115932112
ENSMUSG00000063882.13_2	chr4	-	111	1	ISM	ENSMUSG00000063882.13	ENSMUST00000050580.11	402	4	7955	1	3002	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTTGTCCTTCCTTTGC	NA	False	NA	-8	True	AATAAA	-16	NA	115924273	115924162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_115924200_115924300
ENSMUSG00000063884.7_0	chr6	-	2573	24	FSM	ENSMUSG00000063884.7	ENSMUST00000082094.5	2581	24	0	8	0	-5	multi-exon	FALSE	canonical	0	0	junction_9	208.34992196086	1098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATCTAATTCTTTGTAA	3048	False	NA	-11	True	AATAAA	-18	NA	71885734	71857631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ENSMUSG00000063884.7_7	chr6	-	2522	23	NIC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	264.585833375751	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATCTAATTCTTTGTAA	3048	False	NA	-11	True	AATAAA	-18	NA	71885734	71857631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ENSMUSG00000063888.8_0	chr17	-	1985	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	5	616	5	-616	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	1236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAGTAAAAGATTGTTTT	NA	False	NA	-28	True	NA	NA	NA	47093577	47085448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUSG00000063888.8_10	chr17	-	1413	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	5	-1193	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	847.611873966433	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTGTGTATACCTTTAG	NA	False	NA	-2	True	NA	NA	NA	47093577	47086025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUSG00000063888.8_7	chr17	-	1964	6	ISM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	764	605	745	-605	3prime_fragment	FALSE	canonical	3	1943	junction_1	142.355892045254	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTTTTTAAGATTTTTG	NA	False	NA	-17	True	AGTAAA	-2	NA	47092818	47085437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708
ENSMUSG00000063889.17_0	chr18	-	2667	9	NIC	ENSMUSG00000063889.17	novel	2820	9	NA	NA	64	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_6	31.2507499910002	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	265	False	NA	-2	True	TATAAA	-17	NA	3337424	3266355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_3268130_3273421_3273579_3276693_3276730_3287903_3288093_3295039_3295183_3295321_3295417_3309645_3309756_3325360_3325479_3337379
ENSMUSG00000063889.17_1	chr18	-	2607	7	NIC	ENSMUSG00000063889.17	novel	2931	9	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	28.095076674274	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	17	True	NA	-2	True	TATAAA	-17	NA	3337552	3266355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_3268130_3273421_3273579_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
ENSMUSG00000063889.17_10	chr18	-	2686	8	NIC	ENSMUSG00000063889.17	novel	2820	9	NA	NA	20	-1	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	30.0618410233686	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGCCTGTGTGTATGTC	15	True	NA	-3	True	TATAAA	-16	NA	3337554	3266356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_3268130_3273421_3273579_3276693_3276730_3287903_3288093_3295039_3295183_3295321_3295417_3325360_3325479_3337379
ENSMUSG00000063889.17_11	chr18	-	1651	8	NIC	ENSMUSG00000063889.17	novel	2662	10	NA	NA	-19	-44	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	28.4905999535686	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTTGGTATTTATTTAA	81	False	NA	NA	False	AATAGA	-22	NA	3337608	3267006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_3267733_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
ENSMUSG00000063889.17_12	chr18	-	1695	8	NIC	ENSMUSG00000063889.17	novel	2778	9	NA	NA	-11	2	combination_of_known_splicesites	FALSE	canonical	2	9	junction_5	30.6594194335118	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAGGAAAGGGTGATCA	25	True	NA	NA	False	AATAAA	-23	NA	3337544	3267258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_3268130_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3309645_3309756_3325360_3325479_3337379
ENSMUSG00000063889.17_13	chr18	-	1320	5	NIC	ENSMUSG00000063889.17	novel	2778	9	NA	NA	-8	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	30.9546038579078	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATTTTAGGAAAGGGTG	0	True	NA	NA	False	AATAAA	-19	NA	3337521	3267262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_3268130_3273421_3273579_3276693_3276730_3325360_3325479_3337379
ENSMUSG00000063889.17_15	chr18	-	1141	4	FSM	ENSMUSG00000063889.17	ENSMUST00000149803.8	1422	4	-15	296	-15	2	multi-exon	FALSE	canonical	3	52	junction_2	16.5797734872612	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTCTTGTGCATTTTA	85	False	NA	-4	True	AATAAA	-14	NA	3337604	3294479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_3295183_3295321_3295417_3325360_3325479_3337379
ENSMUSG00000063889.17_17	chr18	-	1229	5	FSM	ENSMUSG00000063889.17	ENSMUST00000142690.2	1256	5	29	-2	-12	2	multi-exon	FALSE	canonical	3	31	junction_3	27.3072792493137	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTCTTGTGCATTTTA	24	True	NA	-4	True	AATAAA	-14	NA	3337545	3294479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
ENSMUSG00000063889.17_21	chr18	-	2828	9	NIC	ENSMUSG00000063889.17	novel	2931	9	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	28.5544983321367	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	21	True	NA	-2	True	TATAAA	-17	NA	3337548	3266355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_3268130_3273421_3273579_3276693_3276730_3287903_3288093_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
ENSMUSG00000063889.17_4	chr18	-	1120	6	NIC	ENSMUSG00000063889.17	novel	2662	10	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	32.251511592482	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATCATTTTAGGAAAGG	2	True	NA	NA	False	AATAAA	-16	NA	3337519	3267265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_3267733_3273421_3273579_3295039_3295183_3295321_3295417_3325360_3325479_3337379
ENSMUSG00000063889.17_7	chr18	-	2135	7	NIC	ENSMUSG00000063889.17	novel	2778	9	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	29.9666481275434	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	-19	True	NA	-2	True	TATAAA	-17	NA	3337588	3266355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_3267733_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3325360_3325479_3337379
ENSMUSG00000063889.17_8	chr18	-	2645	8	NIC	ENSMUSG00000063889.17	novel	2778	9	NA	NA	19	-1	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	26.4405378314498	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGCCTGTGTGTATGTC	14	True	NA	-3	True	TATAAA	-16	NA	3337555	3266356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_3268130_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
ENSMUSG00000063889.17_9	chr18	-	2194	4	NIC	ENSMUSG00000063889.17	novel	2931	9	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_2	31.4430702487315	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	-3	True	NA	-2	True	TATAAA	-17	NA	3337524	3266355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_3268130_3273421_3273579_3325360_3325479_3337379
ENSMUSG00000063894.16_1	chr13	-	3585	2	NNC	ENSMUSG00000063894.16	novel	6954	3	NA	NA	8933	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTGGATTTTTTTGTA	NA	False	NA	-2	True	NA	NA	NA	21702259	21697392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_21698186_21699467
ENSMUSG00000063894.16_3	chr13	-	3375	1	ISM	ENSMUSG00000063894.16	ENSMUST00000045228.12	8805	6	14518	6	10420	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTATTGTGTGGATTTTT	NA	False	NA	-7	True	NA	NA	NA	21700772	21697397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_21697400_21700800
ENSMUSG00000063894.16_4	chr13	-	6670	6	FSM	ENSMUSG00000063894.16	ENSMUST00000045228.12	8805	6	47	2088	0	-628	multi-exon	FALSE	canonical	3	13	junction_1	3.97994974842648	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTAAGGAAGGTAGTTGC	6598	False	NA	NA	False	NA	NA	NA	21715243	21699479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_21705133_21705955_21706080_21706393_21706486_21709307_21709477_21710688_21711192_21715114
ENSMUSG00000063894.16_5	chr13	-	7475	7	NNC	ENSMUSG00000063894.16	novel	8805	6	NA	NA	-5	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7.76029781788188	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTATTGTGTGGATTTTT	6593	False	NA	-7	True	NA	NA	NA	21715248	21697397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_21698186_21699467_21705133_21705955_21706080_21706393_21706486_21709307_21709477_21710688_21711192_21715114
ENSMUSG00000063895.8_0	chr14	-	5224	14	FSM	ENSMUSG00000114797.2	ENSMUST00000225111.2	2936	14	51	-2339	12	0	multi-exon	FALSE	canonical	3	173	junction_1	24.6028814399438	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGTAGGTCTCAGCA	NA	False	NA	-16	True	AATAAA	-18	NA	60488843	60455526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_60459128_60460765_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
ENSMUSG00000063895.8_14	chr14	-	6270	12	ISM	ENSMUSG00000114797.2	ENSMUST00000225111.2	2936	14	26	3571	-13	0	5prime_fragment	FALSE	canonical	3	198	junction_5	17.8552490140959	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAATAAAACATTGTC	NA	False	NA	NA	False	NA	NA	NA	60488868	60461436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
ENSMUSG00000063895.8_15	chr14	-	3905	13	Fusion	ENSMUSG00000076270.3_ENSMUSG00000114797.2	novel	3080	6	NA	NA	-13	0	multi-exon	FALSE	canonical	1	1	junction_1	68.7432825001024	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAATAAAACATTGTC	NA	False	NA	NA	False	NA	NA	NA	60488868	60461436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_-_60463793_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
ENSMUSG00000063895.8_4	chr14	-	6893	13	NIC	ENSMUSG00000114797.2	novel	2936	14	NA	NA	-13	6	intron_retention	FALSE	canonical	3	198	junction_6	17.271524413194	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGGTCTCAGCAGTTGTA	NA	False	NA	-10	True	AATAAA	-24	NA	60488868	60455520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
ENSMUSG00000063902.14_1	chr7	+	1896	1	FSM	ENSMUSG00000063902.14	ENSMUST00000051522.16	1378	1	-16	-502	-16	502	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGTGAATCTAAAAAAAAAAA	NA	False	NA	4	True	AATAAA	-4	NA	83405095	83406991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_83405100_83407000
ENSMUSG00000063903.6_1	chr7	+	881	5	FSM	ENSMUSG00000063903.6	ENSMUST00000075162.5	954	5	67	6	-11	-6	multi-exon	FALSE	canonical	3	34	junction_1	17.0934929139717	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGTTCAAGTTCTGAC	NA	False	NA	1	True	AATAAA	-15	NA	43874850	43879036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43874949_43876944_43877105_43877951_43878239_43878334_43878472_43878837
ENSMUSG00000063903.6_4	chr7	+	438	3	ISM	ENSMUSG00000063903.6	ENSMUST00000206144.2	755	5	3267	-66	3267	-9	3prime_fragment	FALSE	canonical	3	68	junction_1	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAATGAGTTCAAGTTCT	NA	False	NA	-2	True	AATAAA	-12	NA	43878133	43879033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43878239_43878334_43878472_43878837
ENSMUSG00000063904.5_0	chr19	-	2639	18	FSM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	39	5	-1	-3	multi-exon	FALSE	canonical	3	495	junction_17	96.7659038009169	1167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTCTGCAGTGTATGTT	NA	False	NA	-10	True	AATAAA	-12	NA	4978276	4957261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
ENSMUSG00000063904.5_4	chr19	-	2614	17	ISM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	1224	5	0	-3	3prime_fragment	TRUE	canonical	3	689	junction_7	73.2661831525978	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTCTGCAGTGTATGTT	NA	False	NA	-10	True	AATAAA	-12	NA	4977091	4957261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812
ENSMUSG00000063919.12_0	chr5	-	5688	2	FSM	ENSMUSG00000063919.12	ENSMUST00000139425.2	2798	2	262	-3152	262	-4	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTGAAACACAGAGAGAGA	7220	False	NA	NA	False	ATTAAA	-8	NA	116584641	116577338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_116582934_116584548
ENSMUSG00000063931.15_0	chr7	+	1834	15	FSM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	38	9	38	-8	multi-exon	FALSE	canonical	3	282	junction_1	31.3925930429327	379	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGGCTCTTTCTGCCC	NA	False	NA	5	True	AATAAA	-10	NA	34611841	34744124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_34611880_34620753_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
ENSMUSG00000063952.17_0	chr17	+	5596	13	NNC	ENSMUSG00000063952.17	novel	4223	11	NA	NA	-15658	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	73.5222471999689	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGGTGTGCGGTGCTGT	NA	False	NA	2	True	AATAAA	-11	NA	29004405	29057513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_29004515_29024902_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483
ENSMUSG00000063952.17_18	chr17	+	5763	14	NNC	ENSMUSG00000063952.17	novel	4223	11	NA	NA	-15656	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	92.7993317666208	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCTGTGGTGTGCGGTGCT	NA	False	NA	0	True	AATAAA	-9	NA	29004407	29057511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_29004515_29018946_29019118_29024902_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483
ENSMUSG00000063952.17_62	chr17	+	5726	13	FSM	ENSMUSG00000063952.17	ENSMUST00000004985.11	7169	13	33	1410	33	-2	multi-exon	FALSE	canonical	0	0	junction_5	90.6136487143815	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGGTGTGCGGTGCTGT	NA	False	NA	2	True	AATAAA	-11	NA	29020096	29057513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29020336_29024902_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483
ENSMUSG00000063952.17_71	chr17	+	4607	12	ISM	ENSMUSG00000063952.17	ENSMUST00000004985.11	7169	13	5719	1410	770	-2	3prime_fragment	FALSE	canonical	0	0	junction_4	74.8308284904155	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGGTGTGCGGTGCTGT	NA	False	NA	2	True	AATAAA	-11	NA	29025782	29057513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483
ENSMUSG00000063952.17_90	chr17	+	1558	1	ISM	ENSMUSG00000063952.17	ENSMUST00000004985.11	7169	13	35847	1455	8855	1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATATGATGTCTTATTTTC	8694	False	NA	39	True	AATACA	-21	NA	29055910	29057468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29055900_29057500
ENSMUSG00000063953.4_0	chr10	-	3196	1	FSM	ENSMUSG00000063953.4	ENSMUST00000080898.4	3218	1	2	20	2	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	514	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	35587886	35584690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_35584700_35587900
ENSMUSG00000063972.14_0	chr2	-	4784	11	NNC	ENSMUSG00000063972.14	novel	5941	11	NA	NA	-118	-1330	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_5	22.851914580621	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	ACTAAA	-35	NA	38816405	38614715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_38617928_38619494_38619648_38621057_38621180_38628898_38629154_38630391_38630617_38632818_38632974_38638847_38638904_38650198_38650442_38762606_38762652_38775207_38775250_38816129
ENSMUSG00000063972.14_1	chr2	-	3238	1	ISM	ENSMUSG00000063972.14	ENSMUST00000112877.8	6334	12	201074	7	13850	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATGCCATCTGTCTGTG	7290	False	NA	-9	True	AATAAA	-13	NA	38616626	38613388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_38613400_38616600
ENSMUSG00000063972.14_3	chr2	-	4788	11	FSM	ENSMUSG00000063972.14	ENSMUST00000076275.11	5941	11	-177	1330	-119	-1330	multi-exon	FALSE	canonical	3	61	junction_5	17.3677862722916	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	ACTAAA	-35	NA	38816406	38614715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_38617928_38619494_38619648_38621057_38621180_38628898_38629154_38630391_38630620_38632818_38632974_38638847_38638904_38650198_38650442_38762606_38762652_38775207_38775250_38816129
ENSMUSG00000064023.5_1	chr7	+	855	5	FSM	ENSMUSG00000064023.5	ENSMUST00000085461.4	1322	5	467	0	448	0	multi-exon	FALSE	canonical	3	33	junction_4	3.90512483795333	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCGACTGTGCTTTGACC	3344	False	NA	28	True	AATAAA	-18	NA	43447467	43453246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43447557_43448047_43448208_43448488_43448752_43451503_43451638_43453037
ENSMUSG00000064030.16_0	chr10	+	1156	3	FSM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	0	2	0	-2	multi-exon	FALSE	canonical	3	275	junction_1	26	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGGTCAGGCTTTGGC	NA	False	NA	NA	False	AATAAA	-13	NA	128583757	128602430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128583868_128601015_128601110_128601478
ENSMUSG00000064030.16_13	chr10	+	735	1	ISM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	17933	7	17294	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGACATGTGGTCAGGCT	NA	False	NA	NA	False	AATAAA	-8	NA	128601690	128602425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128601700_128602400
ENSMUSG00000064030.16_4	chr10	+	1523	2	ISM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	2	2	2	-2	intron_retention	FALSE	canonical	3	275	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGGTCAGGCTTTGGC	NA	False	NA	NA	False	AATAAA	-13	NA	128583759	128602430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_128583868_128601015
ENSMUSG00000064030.16_5	chr10	+	1211	4	NIC	ENSMUSG00000064030.16	novel	1158	3	NA	NA	0	-2	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	137.41502424731	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGGTCAGGCTTTGGC	NA	False	NA	NA	False	AATAAA	-13	NA	128583757	128602430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_128583868_128586151_128586207_128601015_128601110_128601478
ENSMUSG00000064030.16_8	chr10	+	1093	3	FSM	ENSMUSG00000064030.16	ENSMUST00000065210.10	1156	3	65	-2	-8	-2	multi-exon	FALSE	canonical	3	93	junction_1	117	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGGTCAGGCTTTGGC	NA	False	NA	NA	False	AATAAA	-13	NA	128584388	128602430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128584436_128601015_128601110_128601478
ENSMUSG00000064037.14_1	chr5	+	1634	14	FSM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	21	1489	-5	556	multi-exon	FALSE	canonical	3	859	junction_7	68.5179542833234	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTGTGGTAAGCTTTCC	NA	False	NA	24	True	GATAAA	-13	NA	31652105	31668759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
ENSMUSG00000064037.14_6	chr5	+	2109	13	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-5	556	intron_retention	FALSE	canonical	3	859	junction_7	68.3745302644844	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTGTGGTAAGCTTTCC	NA	False	NA	24	True	GATAAA	-13	NA	31652105	31668759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
ENSMUSG00000064043.16_15	chr17	+	4588	17	NNC	ENSMUSG00000064043.16	novel	3503	12	NA	NA	-16073	-9	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_15	12.1088810383123	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTTTAAGAGGTGTCTCA	2020	False	NA	11	True	AATAAA	-16	NA	47507239	47670379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_47507415_47541155_47541243_47597667_47597783_47624718_47626427_47627539_47627587_47628693_47628848_47630277_47630605_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664622_47664871_47669834
ENSMUSG00000064043.16_18	chr17	+	4504	17	NNC	ENSMUSG00000064043.16	novel	3503	12	NA	NA	-16031	-12	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_5	13.4483967445938	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATCTTTAAGAGGTGTC	2062	False	NA	8	True	AATAAA	-13	NA	47507281	47670376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_47507415_47541155_47541243_47597667_47597783_47624718_47626427_47627539_47627587_47628696_47628848_47630277_47630605_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664658_47664871_47669834
ENSMUSG00000064043.16_22	chr17	+	4513	17	NNC	ENSMUSG00000064043.16	novel	3503	12	NA	NA	-16027	-2	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_7	10.0179526351446	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGGTGTCTCATCTGGGC	2066	False	NA	18	True	AATAAA	-23	NA	47507285	47670386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_47507415_47541155_47541243_47597667_47597783_47624718_47626427_47627539_47627587_47628693_47628848_47630277_47630605_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664658_47664871_47669834
ENSMUSG00000064043.16_40	chr17	+	3389	14	ISM	ENSMUSG00000064043.16	ENSMUST00000190080.9	7044	19	173638	2503	20511	-8	3prime_fragment	FALSE	canonical	3	31	junction_4	10.4468222285323	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTAAGAGGTGTCTCAT	NA	False	NA	12	True	AATAAA	-17	NA	47625505	47670380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_47626427_47627539_47627587_47628693_47628848_47630277_47630605_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664658_47664871_47669834
ENSMUSG00000064043.16_41	chr17	+	3698	14	NIC	ENSMUSG00000064043.16	novel	7044	19	NA	NA	20244	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_12	12.9340612658361	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGGTGTCTCATCTGGGC	NA	False	NA	18	True	AATAAA	-23	NA	47625238	47670386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_47626427_47627539_47627587_47628693_47628848_47630277_47630605_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664622_47664871_47669834
ENSMUSG00000064043.16_50	chr17	+	2026	1	ISM	ENSMUSG00000064043.16	ENSMUST00000190080.9	7044	19	218505	485	65378	-485	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTGTGCCTGCTTCCT	1597	False	NA	NA	False	AATAAA	-20	NA	47670372	47672398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_47670400_47672400
ENSMUSG00000064043.16_7	chr17	+	4672	18	NIC	ENSMUSG00000064043.16	novel	3255	7	NA	NA	-13	-2	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	14.9504371486006	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGGTGTCTCATCTGGGC	NA	False	NA	18	True	AATAAA	-23	NA	47452128	47670386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_47452331_47452749_47452836_47541155_47541243_47597667_47597783_47624718_47626427_47627539_47627587_47628693_47628848_47630277_47630605_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664658_47664871_47669834
ENSMUSG00000064061.14_0	chr16	-	5590	32	FSM	ENSMUSG00000064061.14	ENSMUST00000121869.8	5820	32	223	7	-1	-5	multi-exon	FALSE	canonical	3	63	junction_19	19.7691147506127	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAATATCTATTTCTTT	4420	False	NA	-14	True	AATAAA	-11	NA	48814305	48744601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_48746466_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48772524_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
ENSMUSG00000064061.14_2	chr16	-	1742	1	ISM	ENSMUSG00000064061.14	ENSMUST00000147358.8	3021	10	12697	4	3770	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATATCTATTTCTTTATG	NA	False	NA	-11	True	AATAAA	-14	NA	48746340	48744598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_48744600_48746300
ENSMUSG00000064061.14_3	chr16	-	6834	32	NIC	ENSMUSG00000064061.14	novel	5820	32	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	21.2442316342938	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAATATCTATTTCTTTA	4420	False	NA	-13	True	AATAAA	-12	NA	48814305	48744600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_48747709_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48772524_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
ENSMUSG00000064061.14_5	chr16	-	4977	31	FSM	ENSMUSG00000064061.14	ENSMUST00000114516.8	3331	31	-1	-1645	-1	0	multi-exon	FALSE	canonical	3	44	junction_18	21.5464614264152	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCTATTTCTTTATGTA	4420	False	NA	-9	True	AATAAA	-16	NA	48814305	48744596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_48746466_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
ENSMUSG00000064061.14_7	chr16	-	6215	31	NIC	ENSMUSG00000064061.14	novel	3331	31	NA	NA	-1	-5	combination_of_known_junctions	FALSE	canonical	3	44	junction_18	22.9540846038347	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAATATCTATTTCTTT	4420	False	NA	-14	True	AATAAA	-11	NA	48814305	48744601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_48747709_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
ENSMUSG00000064068.16_0	chr3	-	1080	8	FSM	ENSMUSG00000064068.16	ENSMUST00000239452.2	1522	8	434	8	6	0	multi-exon	FALSE	canonical	3	739	junction_1	39.053077434984	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGGGATCAAAGAATCCC	NA	False	NA	-24	True	AATAAA	-13	NA	89121208	89116395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117984_89119989_89120070_89120183_89120254_89121119
ENSMUSG00000064068.16_1	chr3	-	1531	7	NIC	ENSMUSG00000064068.16	novel	1522	8	NA	NA	2	0	intron_retention	FALSE	canonical	3	739	junction_1	41.4286535302963	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGGGATCAAAGAATCCC	NA	False	NA	-24	True	AATAAA	-13	NA	89121212	89116395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_89116729_89116811_89117491_89117572_89117756_89117890_89117984_89119989_89120070_89120183_89120254_89121119
ENSMUSG00000064080.13_0	chr6	+	4258	17	FSM	ENSMUSG00000064080.13	ENSMUST00000113498.9	4644	17	377	9	1	-9	multi-exon	FALSE	canonical	2	6	junction_1	5.3370755100523	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGGTTATTCAGTCTCT	NA	False	NA	NA	False	ATTAAA	-17	NA	91189813	91249512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_91189883_91210044_91211334_91227839_91227952_91229425_91229556_91231422_91231604_91233216_91233427_91233861_91233976_91234706_91234809_91240320_91240456_91241680_91241819_91242699_91242844_91242937_91243067_91243296_91243423_91245519_91245637_91246069_91246199_91246945_91247070_91248503
ENSMUSG00000064080.13_5	chr6	+	2983	15	ISM	ENSMUSG00000064080.13	ENSMUST00000113498.9	4644	17	38322	7	-5224	-7	3prime_fragment	FALSE	canonical	3	11	junction_5	4.6246897303539	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTATTCAGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	91227758	91249514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_91227952_91229425_91229556_91231422_91231604_91233216_91233427_91233861_91233976_91234706_91234809_91240320_91240456_91241680_91241819_91242699_91242844_91242937_91243067_91243296_91243423_91245519_91245637_91246069_91246199_91246945_91247070_91248503
ENSMUSG00000064080.13_7	chr6	+	1106	2	ISM	ENSMUSG00000064080.13	ENSMUST00000137029.2	1612	6	4107	-94	4107	-14	3prime_fragment	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACAGAAAGGTTATTCAG	NA	False	NA	NA	False	ATTAAA	-12	NA	91246967	91249507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_91247070_91248503
ENSMUSG00000064090.15_0	chr11	-	1816	13	NIC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	30.8175635348128	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26543643	26421403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543385
ENSMUSG00000064090.15_2	chr11	-	1615	13	FSM	ENSMUSG00000064090.15	ENSMUST00000078362.13	1889	13	274	0	-24	0	multi-exon	FALSE	canonical	3	73	junction_12	13.1368332899862	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26543646	26421403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543589
ENSMUSG00000064090.15_5	chr11	-	1599	13	NIC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	-1	-6	combination_of_known_junctions	FALSE	canonical	3	12	junction_12	27.6777086399065	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTTAAACAACTTTTAAG	NA	False	NA	-13	True	AATAAA	-22	NA	26544000	26421409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543953
ENSMUSG00000064105.14_0	chr19	+	3072	8	FSM	ENSMUSG00000064105.14	ENSMUST00000099373.12	4955	8	53	1830	44	0	multi-exon	FALSE	canonical	0	0	junction_3	39.1240830889495	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATCATGTTTTTGTTT	NA	False	NA	29	True	TTTAAA	-25	NA	46750087	46866801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46751833_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
ENSMUSG00000064105.14_1	chr19	+	2916	8	NNC	ENSMUSG00000064105.14	novel	4955	8	NA	NA	196	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	44.8362098563841	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGAGATCATGTTTTTG	NA	False	NA	26	True	TTTAAA	-22	NA	46750239	46866798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_46751833_46842339_46842484_46845274_46845413_46847381_46847551_46856976_46857071_46860094_46860161_46865646_46865832_46866271
ENSMUSG00000064105.14_11	chr19	+	1651	8	NNC	ENSMUSG00000064105.14	novel	4955	8	NA	NA	-46149	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	43.6507474747231	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCAGAACGTGCCAAGTC	NA	False	NA	8	True	AAGAAA	-10	NA	46807949	46867013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_46808062_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
ENSMUSG00000064105.14_3	chr19	+	3078	7	FSM	ENSMUSG00000064105.14	ENSMUST00000077666.6	3051	7	185	-212	184	-5	multi-exon	FALSE	canonical	0	0	junction_3	45.4337123975383	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCAGAACGTGCCAAGTC	NA	False	NA	8	True	AAGAAA	-10	NA	46750227	46867013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46751833_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46865646_46865832_46866271
ENSMUSG00000064120.15_0	chr17	+	2613	11	FSM	ENSMUSG00000064120.15	ENSMUST00000024797.16	2646	11	30	3	-16	-3	multi-exon	FALSE	canonical	3	15	junction_10	7.06328535456412	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAGGATTGGGGACTCT	NA	False	NA	3	True	AATAAA	-19	NA	49735421	49762457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_49735593_49740197_49740325_49742122_49742291_49746449_49746615_49756127_49756190_49756462_49756575_49756776_49756890_49757289_49757401_49759238_49759360_49759822_49759886_49761057
ENSMUSG00000064120.15_1	chr17	+	2610	11	FSM	ENSMUSG00000064120.15	ENSMUST00000173033.8	2588	11	-28	6	18	-3	multi-exon	FALSE	canonical	3	5	junction_10	9.4387499172295	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAGGATTGGGGACTCT	NA	False	NA	3	True	AATAAA	-19	NA	49735409	49762457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_49735593_49740197_49740325_49742122_49742291_49746449_49746615_49756127_49756190_49756462_49756575_49756776_49756890_49757289_49757401_49759238_49759360_49759822_49759871_49761057
ENSMUSG00000064120.15_8	chr17	+	1583	1	Genic_Genomic	ENSMUSG00000064120.15	novel	NA	NA	NA	NA	2222	653	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACGCTGTAGAGTT	NA	False	NA	NA	False	TATAAA	-12	NA	49761533	49763116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_+_49761500_49763100
ENSMUSG00000064125.15_0	chr8	-	4566	7	NIC	ENSMUSG00000064125.15	novel	4616	7	NA	NA	66	-3	combination_of_known_junctions	TRUE	canonical	0	0	junction_6	0.942809041582063	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTGCTTTTGTCAAGGT	8654	False	NA	-3	True	NA	NA	NA	4267246	4259545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_4261037_4262885_4265082_4265165_4265279_4265968_4266072_4266181_4266556_4266848_4266980_4267088
ENSMUSG00000064127.14_1	chrX	-	6890	31	FSM	ENSMUSG00000064127.14	ENSMUST00000096495.11	6963	31	58	15	58	-15	multi-exon	FALSE	canonical	3	55	junction_7	16.6631996393917	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTTTCAGAGAACTACCAA	NA	False	NA	-18	True	AATAAA	-13	NA	12628254	12541622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_12543891_12546482_12546676_12547010_12547137_12550216_12550325_12550423_12550604_12551954_12552191_12553257_12553441_12555567_12555700_12559823_12559936_12562391_12562530_12569451_12569722_12569989_12570143_12571326_12571419_12572537_12572685_12572770_12572932_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
ENSMUSG00000064127.14_2	chrX	-	6745	30	NIC	ENSMUSG00000064127.14	novel	6963	31	NA	NA	74	-12	combination_of_known_junctions	TRUE	canonical	3	25	junction_7	19.1554750278713	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAGAGAACTACCAACTC	NA	False	NA	-15	True	AATAAA	-16	NA	12628238	12541619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_12543891_12546482_12546676_12547010_12547137_12550216_12550325_12550423_12550604_12551954_12552191_12553257_12553441_12559823_12559936_12562391_12562530_12569451_12569722_12569989_12570143_12571326_12571419_12572537_12572685_12572770_12572932_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
ENSMUSG00000064127.14_20	chrX	-	5109	30	ISM	ENSMUSG00000064127.14	ENSMUST00000096495.11	6963	31	70	4376	70	4	5prime_fragment	FALSE	canonical	3	55	junction_6	16.6138203002884	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCGCTGCTTTTTGGGCTTC	NA	False	NA	0	True	AATAAA	-17	NA	12628242	12545983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_12546676_12547010_12547137_12550216_12550325_12550423_12550604_12551954_12552191_12553257_12553441_12555567_12555700_12559823_12559936_12562391_12562530_12569451_12569722_12569989_12570143_12571326_12571419_12572537_12572685_12572770_12572932_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
ENSMUSG00000064127.14_28	chrX	-	6521	21	ISM	ENSMUSG00000064127.14	ENSMUST00000096495.11	6963	31	66	24529	66	6475	5prime_fragment	FALSE	canonical	3	69	junction_7	14.6706339331332	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTATTTGTATTACTTAA	NA	False	NA	NA	False	NA	NA	NA	12628246	12566136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_12569722_12569989_12570143_12571326_12571419_12572537_12572685_12572770_12572932_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
ENSMUSG00000064127.14_40	chrX	-	1893	11	NNC	ENSMUSG00000064127.14	novel	6963	31	NA	NA	63	-34256	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	26.949768088056	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAGTATGCAGAATAAT	NA	False	NA	NA	False	ATTAAA	-11	NA	12628249	12609623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_12609903_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
ENSMUSG00000064128.9_0	chr14	-	4286	17	NNC	ENSMUSG00000064128.9	novel	4363	17	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_16	15.1471944597011	38	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCATCTGTTTTACATTC	2392	False	NA	NA	False	AATAAA	-39	NA	56809303	56764223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_56764569_56767144_56767266_56767346_56767432_56767506_56767648_56769692_56769807_56770032_56770098_56772212_56772298_56772807_56773051_56780221_56780388_56786880_56787014_56789379_56791007_56791116_56791220_56792546_56792659_56796029_56796294_56801409_56801534_56802125_56802625_56809244
ENSMUSG00000064128.9_1	chr14	-	4334	17	NIC	ENSMUSG00000064128.9	novel	4363	17	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	37	junction_16	11.6039796513955	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGCATCTGTTTTACAT	2392	False	NA	NA	False	AATAAA	-37	NA	56809303	56764225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_56764569_56767144_56767266_56767346_56767432_56767506_56767648_56769692_56769807_56770032_56770098_56772212_56772298_56772807_56773051_56780221_56780388_56786880_56787014_56789379_56791007_56791116_56791220_56792546_56792659_56796029_56796294_56801409_56801534_56802125_56802625_56809194
ENSMUSG00000064128.9_3	chr14	-	2119	11	NIC	ENSMUSG00000064128.9	novel	4363	17	NA	NA	-60	-8	combination_of_known_junctions	FALSE	canonical	3	50	junction_5	10.1074230147946	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGCATCTGTTTTACAT	NA	False	NA	NA	False	AATAAA	-37	NA	56790002	56764225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_56764569_56767144_56767266_56767346_56767432_56767506_56767648_56769692_56769807_56770032_56770098_56772212_56772298_56772807_56773051_56780221_56780388_56786880_56787014_56789379
ENSMUSG00000064138.15_0	chr13	+	3858	10	FSM	ENSMUSG00000064138.15	ENSMUST00000091459.12	3892	10	29	5	0	-5	multi-exon	FALSE	canonical	3	89	junction_7	8.92907582349531	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGCAACTGTGTCTTC	NA	False	NA	NA	False	AATAAA	-8	NA	77856837	78314349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_77856973_77907546_77907649_77909956_77910058_77973441_77973508_77982628_77982821_78050772_78050995_78100103_78100224_78147704_78147822_78154506_78154592_78311631
ENSMUSG00000064138.15_1	chr13	+	3982	11	FSM	ENSMUSG00000064138.15	ENSMUST00000163257.9	1436	11	29	-2575	0	-5	multi-exon	FALSE	canonical	2	7	junction_2	38.9	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGCAACTGTGTCTTC	NA	False	NA	NA	False	AATAAA	-8	NA	77856837	78314349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_77856973_77890881_77891006_77907546_77907649_77909956_77910058_77973441_77973508_77982628_77982821_78050772_78050995_78100103_78100224_78147704_78147822_78154506_78154592_78311631
ENSMUSG00000064138.15_10	chr13	+	3738	9	NIC	ENSMUSG00000064138.15	novel	3892	10	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	34.765059686415	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGCAACTGTGTCTTC	NA	False	NA	NA	False	AATAAA	-8	NA	77856837	78314349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_77856973_77907546_77907649_77909956_77910058_77973441_77973508_77982628_77982821_78050772_78050995_78147704_78147822_78154506_78154592_78311631
ENSMUSG00000064138.15_3	chr13	+	3672	9	FSM	ENSMUSG00000064138.15	ENSMUST00000099358.5	2242	9	19	-1449	3	-5	multi-exon	TRUE	canonical	1	4	junction_4	35.0408244052562	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGCAACTGTGTCTTC	NA	False	NA	NA	False	AATAAA	-8	NA	77856831	78314349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_77856973_77907546_77907649_77909956_77910058_77973441_77973508_78050772_78050995_78100103_78100224_78147704_78147822_78154506_78154592_78311631
ENSMUSG00000064141.15_0	chr4	-	2394	6	FSM	ENSMUSG00000064141.15	ENSMUST00000106280.8	2362	6	-34	2	-34	-2	multi-exon	FALSE	canonical	3	8	junction_2	16.2898741554378	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCACTGATTTACAGATT	6802	False	NA	NA	False	NA	NA	NA	120808930	120787335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_120788704_120791529_120791629_120792263_120792391_120804485_120804767_120806528_120806758_120808640
ENSMUSG00000064141.15_3	chr4	-	2373	6	NIC	ENSMUSG00000064141.15	novel	2362	6	NA	NA	-19	-5	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	13.3476589707709	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATTCACTGATTTACAG	6817	False	NA	NA	False	NA	NA	NA	120808915	120787338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_120788704_120791529_120791626_120792263_120792391_120804485_120804767_120806528_120806758_120808640
ENSMUSG00000064141.15_5	chr4	-	2268	7	NNC	ENSMUSG00000064141.15	novel	2362	6	NA	NA	8	-5	at_least_one_novel_splicesite	TRUE	non_canonical	3	18	junction_2	12.1928941054479	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATTCACTGATTTACAG	6844	False	NA	NA	False	NA	NA	NA	120808888	120787338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_120788704_120791529_120791626_120792263_120792391_120804485_120804596_120804673_120804767_120806528_120806758_120808640
ENSMUSG00000064141.15_8	chr4	-	937	5	NNC	ENSMUSG00000064141.15	novel	2362	6	NA	NA	12	-3626	at_least_one_novel_splicesite	FALSE	non_canonical	3	37	junction_2	4.20565096031518	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACATCCTTGTTTGCTTG	6848	False	NA	NA	False	NA	NA	NA	120808884	120792129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_120792391_120804485_120804596_120804673_120804767_120806528_120806758_120808640
ENSMUSG00000064145.13_0	chr9	-	3898	16	FSM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	18	8	7	-3	multi-exon	FALSE	canonical	3	517	junction_5	114.47891605978	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAAGCCTGTGGAGTC	NA	False	NA	NA	False	AATAAA	-12	NA	108526561	108480148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
ENSMUSG00000064145.13_1	chr9	-	3894	16	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	8	-3	combination_of_known_junctions	TRUE	canonical	3	359	junction_14	154.606683771002	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAAGCCTGTGGAGTC	NA	False	NA	NA	False	AATAAA	-12	NA	108526560	108480148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521565_108522131_108522194_108526427
ENSMUSG00000064145.13_2	chr9	-	3943	17	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	8	-3	combination_of_known_junctions	FALSE	canonical	3	155	junction_13	228.429112363114	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAAGCCTGTGGAGTC	NA	False	NA	NA	False	AATAAA	-12	NA	108526560	108480148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521568_108522131_108522194_108526427
ENSMUSG00000064145.13_6	chr9	-	3941	17	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	7	-3	combination_of_known_junctions	FALSE	canonical	3	155	junction_13	243.725439467754	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAAGCCTGTGGAGTC	NA	False	NA	NA	False	AATAAA	-12	NA	108526561	108480148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521565_108522131_108522194_108526427
ENSMUSG00000064145.13_7	chr9	-	1668	1	FSM	ENSMUSG00000064145.13	ENSMUST00000193923.2	3664	1	1995	1	1995	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGCCTGTGGAGTCTT	8720	False	NA	NA	False	AATAAA	-14	NA	108481814	108480146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108480100_108481800
ENSMUSG00000064147.8_0	chr17	+	3672	12	NIC	ENSMUSG00000064147.8	novel	3730	14	NA	NA	-192	-3	combination_of_known_splicesites	TRUE	canonical	0	0	junction_4	2.06105164522812	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAGACTCTGGTGTCAAC	5821	False	NA	NA	False	AATAAA	-7	NA	29332926	29367947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_29333210_29339815_29340035_29350437_29350547_29352611_29352787_29354788_29354880_29356952_29357147_29358088_29359525_29363462_29363545_29364220_29364336_29364914_29365017_29366321_29366399_29367158
ENSMUSG00000064147.8_8	chr17	+	2878	8	FSM	ENSMUSG00000064147.8	ENSMUST00000233860.2	4105	8	1230	-3	-52	-1	multi-exon	FALSE	canonical	0	0	junction_1	2.35606035749581	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTGGTGTCAACTCTGAA	7236	False	NA	NA	False	AATAAA	-13	NA	29355259	29367953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29355337_29356952_29357147_29358088_29359525_29363462_29363545_29364220_29364336_29364914_29365017_29366321_29366399_29367158
ENSMUSG00000064179.14_1	chr7	-	679	7	ISM	ENSMUSG00000064179.14	ENSMUST00000166161.8	750	12	4312	-94	-118	2	3prime_fragment	TRUE	canonical	3	24	junction_6	12.1849178176228	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCTTCAGGGTTGTTAT	9767	False	NA	-9	True	AATAAA	-21	NA	4513055	4507659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950
ENSMUSG00000064179.14_2	chr7	-	734	3	ISM	ENSMUSG00000064179.14	ENSMUST00000086502.5	485	4	-53	-121	-53	-2	intron_retention	FALSE	canonical	3	51	junction_2	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAAGTTCTTCAGGGTTG	7277	False	NA	-13	True	AATAAA	-17	NA	4511077	4507663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_4507800_4510381_4510423_4510520
ENSMUSG00000064179.14_3	chr7	-	784	4	FSM	ENSMUSG00000064179.14	ENSMUST00000086502.5	485	4	-83	-216	-83	0	multi-exon	FALSE	canonical	3	16	junction_3	18.0800688297608	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTGGGAGTACAACTTG	7247	False	NA	82	True	ATTAAA	-15	NA	4511107	4507568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4510686
ENSMUSG00000064181.7_0	chr10	-	1816	11	FSM	ENSMUSG00000064181.7	ENSMUST00000219109.2	1844	11	29	-1	-22	1	multi-exon	TRUE	canonical	3	251	junction_7	35.031985384788	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCGTGTGTCTTTCTTAG	NA	False	NA	-6	True	AATAAA	-11	NA	116786307	116742680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116764093_116764190_116773301_116773561_116775105_116775387_116786164
ENSMUSG00000064181.7_1	chr10	-	1713	10	FSM	ENSMUSG00000064181.7	ENSMUST00000020375.7	2690	10	-18	995	-18	-2	multi-exon	FALSE	canonical	3	22	junction_7	97.8627156332334	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGAGTGCGTGTGTCTTTCT	NA	False	NA	-9	True	AATAAA	-8	NA	116786303	116742683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116773301_116773561_116775105_116775387_116786164
ENSMUSG00000064181.7_3	chr10	-	1806	11	NIC	ENSMUSG00000064181.7	novel	1844	11	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	3	51	junction_10	85.4016978753936	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGTGCGTGTGTCTTTCTT	NA	False	NA	-8	True	AATAAA	-9	NA	116786304	116742682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116764093_116764190_116773301_116773561_116775105_116775382_116786164
ENSMUSG00000064193.9_0	chr2	+	1667	1	FSM	ENSMUSG00000064193.9	ENSMUST00000138679.2	1302	1	-46	-319	-46	319	mono-exon	FALSE	NA	NA	NA	NA	NA	3113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAAAAAAAATATTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	80667438	80669105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_80667400_80669100
ENSMUSG00000064194.11_12	chr7	+	2932	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	5	175	5	-175	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGGCACTCTTTATAAAT	NA	False	NA	9	True	AATAAA	-17	NA	42827016	42841358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
ENSMUSG00000064194.11_55	chr7	+	1558	1	ISM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	12801	163	3219	-163	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAATATGTCCCAGTGC	NA	False	NA	21	True	AATAAA	-29	NA	42839812	42841370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_42839800_42841400
ENSMUSG00000064194.11_8	chr7	+	2705	5	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	6	-179	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	176.4291642558	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTGGGGGCACTCTTTAT	NA	False	NA	5	True	AATAAA	-13	NA	42827017	42841354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42838749_42838970
ENSMUSG00000064194.11_9	chr7	+	2874	5	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	5	-179	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	176.4291642558	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTGGGGGCACTCTTTAT	NA	False	NA	5	True	AATAAA	-13	NA	42827016	42841354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42838929_42838982
ENSMUSG00000064210.8_0	chr15	+	5630	20	FSM	ENSMUSG00000064210.8	ENSMUST00000071874.8	4927	20	10	-713	10	713	multi-exon	FALSE	canonical	3	69	junction_10	12.2043995518441	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACAATGCTGTGGCCTA	NA	False	NA	1	True	AATAAA	-10	NA	95688733	95873345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_95688938_95762105_95762189_95792293_95792423_95810185_95810252_95811252_95811538_95811752_95811867_95813833_95813950_95818124_95818260_95825404_95825511_95829663_95829725_95839090_95839234_95841278_95841357_95846152_95846379_95847371_95847542_95847739_95847838_95853771_95853903_95859956_95860163_95863701_95863905_95865503_95865610_95870375
ENSMUSG00000064210.8_1	chr15	+	5693	21	FSM	ENSMUSG00000064210.8	ENSMUST00000227791.2	3149	21	-39	-2505	10	713	multi-exon	FALSE	canonical	3	29	junction_1	22.898635330517	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACAATGCTGTGGCCTA	NA	False	NA	1	True	AATAAA	-10	NA	95688733	95873345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_95688938_95728524_95728588_95762105_95762189_95792293_95792423_95810185_95810252_95811252_95811538_95811752_95811867_95813833_95813950_95818124_95818260_95825404_95825511_95829663_95829725_95839090_95839234_95841278_95841357_95846152_95846379_95847371_95847542_95847739_95847838_95853771_95853903_95859956_95860163_95863701_95863905_95865503_95865610_95870375
ENSMUSG00000064210.8_18	chr15	+	3356	4	ISM	ENSMUSG00000064210.8	ENSMUST00000071874.8	4927	20	171364	-715	23613	715	3prime_fragment	FALSE	canonical	3	79	junction_1	9.7410927974683	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAATGCTGTGGCCTAAC	7908	False	NA	3	True	AATAAA	-12	NA	95860087	95873347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_95860163_95863701_95863905_95865503_95865610_95870375
ENSMUSG00000064210.8_21	chr15	+	2470	1	Genic_Genomic	ENSMUSG00000064210.8	novel	NA	NA	NA	NA	34401	713	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACAATGCTGTGGCCTA	6771	False	NA	1	True	AATAAA	-10	NA	95870875	95873345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_95870900_95873300
ENSMUSG00000064215.14_0	chr12	+	1027	7	FSM	ENSMUSG00000064215.14	ENSMUST00000085065.12	977	7	-50	0	-2	0	multi-exon	FALSE	canonical	1	4	junction_4	6.23832242407097	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	6584	False	NA	5	True	AATAAA	-19	NA	103400467	103406498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403648_103403784_103403934_103403965_103405659_103405822_103406212
ENSMUSG00000064225.7_0	chr9	+	2127	1	FSM	ENSMUSG00000064225.7	ENSMUST00000079597.7	8367	1	262	5978	262	-5978	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCCCAAATGACTGGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	95441971	95444098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_95442000_95444100
ENSMUSG00000064225.7_1	chr9	+	4030	1	FSM	ENSMUSG00000064225.7	ENSMUST00000079597.7	8367	1	4333	4	4333	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGTTTAGGACTGGATT	NA	False	NA	NA	False	AATAAA	-13	NA	95446042	95450072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_95446000_95450100
ENSMUSG00000064246.11_1	chr1	+	1640	10	FSM	ENSMUSG00000064246.11	ENSMUST00000082060.10	1687	10	40	7	-30	-5	multi-exon	FALSE	canonical	1	1	junction_5	1.61780219761789	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCTAACGGTGTGCTAT	842	False	NA	NA	False	AATAAA	-6	NA	134110181	134117760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_134110291_134110517_134110548_134111234_134111440_134111861_134111919_134112886_134113038_134114242_134114365_134115607_134115732_134116232_134116416_134116934_134117052_134117218
ENSMUSG00000064254.7_0	chr7	+	951	7	ISM	ENSMUSG00000064254.7	ENSMUST00000077191.7	1484	8	6347	5	6347	-5	3prime_fragment	FALSE	canonical	3	79	junction_1	14.7384606462894	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAATCTGAGTTCTGCTTG	NA	False	NA	4	True	AATAAA	-19	NA	24293314	24308345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24293437_24293842_24293988_24294424_24294574_24305629_24305760_24307292_24307383_24307776_24307894_24308147
ENSMUSG00000064264.15_1	chr7	+	1104	3	FSM	ENSMUSG00000064264.15	ENSMUST00000071361.13	1182	3	60	18	0	-16	multi-exon	FALSE	canonical	3	407	junction_2	41.5	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTGGCTCCGCATATG	NA	False	NA	18	True	AATAAA	-12	NA	24206554	24215089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24206862_24209970_24210179_24214500
ENSMUSG00000064264.15_2	chr7	+	1352	4	NNC	ENSMUSG00000064264.15	novel	1159	3	NA	NA	0	-16	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	89.1777251709566	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTGGCTCCGCATATG	NA	False	NA	18	True	AATAAA	-12	NA	24206554	24215089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_24206862_24208193_24208403_24209970_24210179_24214461
ENSMUSG00000064264.15_4	chr7	+	1313	4	NNC	ENSMUSG00000064264.15	novel	1182	3	NA	NA	0	-16	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	150.608395811418	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTGGCTCCGCATATG	NA	False	NA	18	True	AATAAA	-12	NA	24206554	24215089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_24206862_24208193_24208403_24209970_24210179_24214500
ENSMUSG00000064264.15_5	chr7	+	1143	3	FSM	ENSMUSG00000064264.15	ENSMUST00000177205.2	1159	3	0	16	0	-16	multi-exon	FALSE	canonical	3	276	junction_2	107	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTGGCTCCGCATATG	NA	False	NA	18	True	AATAAA	-12	NA	24206554	24215089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24206862_24209970_24210179_24214461
ENSMUSG00000064264.15_6	chr7	+	1168	3	NIC	ENSMUSG00000064264.15	novel	1182	3	NA	NA	-10	-16	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	184.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTGGCTCCGCATATG	NA	False	NA	18	True	AATAAA	-12	NA	24206513	24215089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_24206862_24209947_24210179_24214500
ENSMUSG00000064267.14_0	chr5	+	2910	8	NIC	ENSMUSG00000064267.14	novel	2805	7	NA	NA	13	-27	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	18.6153327191565	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTTGCTGTCATGGGGCT	NA	False	NA	1	True	AATAAA	-12	NA	122344879	122380333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_122345220_122348404_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
ENSMUSG00000064267.14_10	chr5	+	1386	1	ISM	ENSMUSG00000064267.14	ENSMUST00000072602.14	2790	8	31154	29	30749	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCCTTGCTGTCATGGGG	6330	False	NA	-1	True	AATAAA	-10	NA	122378945	122380331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_122378900_122380300
ENSMUSG00000064267.14_2	chr5	+	2568	7	FSM	ENSMUSG00000064267.14	ENSMUST00000100747.3	2805	7	210	27	210	-27	multi-exon	FALSE	canonical	3	76	junction_1	6.12825877028341	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTTGCTGTCATGGGGCT	NA	False	NA	1	True	AATAAA	-12	NA	122348406	122380333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
ENSMUSG00000064267.14_3	chr5	+	2615	8	FSM	ENSMUSG00000064267.14	ENSMUST00000072602.14	2790	8	148	27	-32	-27	multi-exon	FALSE	canonical	3	30	junction_1	20.2887321698825	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTTGCTGTCATGGGGCT	NA	False	NA	1	True	AATAAA	-12	NA	122347939	122380333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122347985_122348404_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
ENSMUSG00000064267.14_7	chr5	+	2141	5	ISM	ENSMUSG00000064267.14	ENSMUST00000100747.3	2805	7	23532	27	23532	-27	3prime_fragment	FALSE	canonical	3	83	junction_2	4.30116263352131	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTTGCTGTCATGGGGCT	NA	False	NA	1	True	AATAAA	-12	NA	122371728	122380333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
ENSMUSG00000064284.13_1	chr15	-	960	5	FSM	ENSMUSG00000064284.13	ENSMUST00000071876.13	997	5	33	4	-4	-4	multi-exon	FALSE	canonical	3	77	junction_4	106.509389257473	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGCTGGTGGTTTGAGTC	8119	False	NA	-4	True	ATTAAA	-11	NA	85695864	85691176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695839
ENSMUSG00000064284.13_13	chr15	-	2247	3	ISM	ENSMUSG00000064284.13	ENSMUST00000154814.2	421	4	12	-1248	-3	-8	intron_retention	FALSE	canonical	3	306	junction_2	22	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGATAAGCTGGTGGTTTG	8135	False	NA	-8	True	ATTAAA	-7	NA	85695848	85691180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_85692569_85693412_85693526_85695102
ENSMUSG00000064284.13_14	chr15	-	936	4	FSM	ENSMUSG00000064284.13	ENSMUST00000125947.8	706	4	41	-271	41	-4	multi-exon	FALSE	canonical	3	301	junction_1	22.0151463012778	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGCTGGTGGTTTGAGTC	8733	False	NA	-4	True	ATTAAA	-11	NA	85695250	85691176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102
ENSMUSG00000064284.13_2	chr15	-	823	4	FSM	ENSMUSG00000064284.13	ENSMUST00000150995.8	566	4	20	-277	-18	-8	multi-exon	FALSE	canonical	3	9	junction_3	150.534602888062	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGATAAGCTGGTGGTTTG	8105	False	NA	-8	True	ATTAAA	-7	NA	85695878	85691180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695839
ENSMUSG00000064284.13_4	chr15	-	1050	5	NNC	ENSMUSG00000064284.13	novel	997	5	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	139.440623564297	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGCTGGTGGTTTGAGTC	8125	False	NA	-4	True	ATTAAA	-11	NA	85695858	85691176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695743
ENSMUSG00000064284.13_5	chr15	-	903	4	NNC	ENSMUSG00000064284.13	novel	566	4	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	154.740643228166	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGCTGGTGGTTTGAGTC	8125	False	NA	-4	True	ATTAAA	-11	NA	85695858	85691176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_85691740_85692456_85692569_85693412_85693526_85695743
ENSMUSG00000064289.16_1	chr2	+	1908	8	FSM	ENSMUSG00000064289.16	ENSMUST00000112495.8	2039	8	46	85	-13	-4	multi-exon	FALSE	canonical	3	34	junction_2	9.53190132434987	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGACTTACGTCGTGC	NA	False	NA	NA	False	ATTAAA	-14	NA	61423466	61484430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
ENSMUSG00000064289.16_10	chr2	+	3217	1	NIC	ENSMUSG00000064289.16	novel	2016	8	NA	NA	7032	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATTAAAAGTGACTTAC	NA	False	NA	NA	False	ATTAAA	-7	NA	61481206	61484423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_61481200_61484400
ENSMUSG00000064289.16_3	chr2	+	1883	8	NIC	ENSMUSG00000064289.16	novel	2227	9	NA	NA	-13	-4	combination_of_known_junctions	FALSE	canonical	3	7	junction_2	16.9741700527476	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGACTTACGTCGTGC	NA	False	NA	NA	False	ATTAAA	-14	NA	61423494	61484430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_61423553_61443994_61444143_61457246_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
ENSMUSG00000064289.16_4	chr2	+	2093	9	NIC	ENSMUSG00000064289.16	novel	2227	9	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	19.9874960913067	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTACGTCGTGCTTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	61423490	61484434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_61423553_61424340_61424546_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
ENSMUSG00000064289.16_5	chr2	+	2161	7	FSM	ENSMUSG00000064289.16	ENSMUST00000112494.2	2698	7	11	526	11	-526	multi-exon	FALSE	canonical	3	34	junction_2	10.286182749473	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGAGTTCCTGTGGAGCT	NA	False	NA	NA	False	ATTAAA	-18	NA	61423490	61481617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081
ENSMUSG00000064294.13_0	chr1	+	4314	35	FSM	ENSMUSG00000064294.13	ENSMUST00000040999.14	4606	35	41	251	-9	-251	multi-exon	FALSE	canonical	3	19	junction_6	6.33501009795379	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAATTTCTGTGCTGAG	NA	False	NA	8	True	ATTAAA	-18	NA	58152335	58239606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_58152472_58154029_58154088_58157756_58157854_58158639_58158749_58160136_58160264_58164176_58164239_58166785_58166867_58177374_58177456_58180509_58180655_58181828_58181922_58185582_58185735_58186352_58186447_58189453_58189564_58191712_58191898_58192179_58192343_58192638_58192732_58197359_58197530_58198063_58198179_58198795_58198919_58202507_58202605_58204995_58205121_58206761_58206896_58208936_58209025_58209815_58209903_58210900_58211093_58211279_58211508_58215632_58215729_58216677_58216807_58218475_58218551_58219764_58219818_58222624_58222740_58225435_58225502_58227493_58227683_58233784_58233953_58239328
ENSMUSG00000064294.13_4	chr1	+	5101	26	ISM	ENSMUSG00000064294.13	ENSMUST00000040999.14	4606	35	42	26393	-8	2058	5prime_fragment	FALSE	canonical	3	19	junction_6	4.5740135548553	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGATTTTTGTTAGTGCGT	NA	False	NA	NA	False	TATAAA	-11	NA	58152336	58213464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_58152472_58154029_58154088_58157756_58157854_58158639_58158749_58160136_58160264_58164176_58164239_58166785_58166867_58177374_58177456_58180509_58180655_58181828_58181922_58185582_58185735_58186352_58186447_58189453_58189564_58191712_58191898_58192179_58192343_58192638_58192732_58197359_58197530_58198063_58198179_58198795_58198919_58202507_58202605_58204995_58205121_58206761_58206896_58208936_58209025_58209815_58209903_58210900_58211093_58211279
ENSMUSG00000064294.13_8	chr1	+	3546	27	ISM	ENSMUSG00000064294.13	ENSMUST00000040999.14	4606	35	28222	261	28172	-261	3prime_fragment	FALSE	canonical	3	22	junction_16	6.03944137077312	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCACTGTGTGAAGAATTT	NA	False	NA	-2	True	ATTAAA	-8	NA	58180516	58239596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_58180655_58181828_58181922_58185582_58185735_58186352_58186447_58189453_58189564_58191712_58191898_58192179_58192343_58192638_58192732_58197359_58197530_58198063_58198179_58198795_58198919_58202507_58202605_58204995_58205121_58206761_58206896_58208936_58209025_58209815_58209903_58210900_58211093_58211279_58211508_58215632_58215729_58216677_58216807_58218475_58218551_58219764_58219818_58222624_58222740_58225435_58225502_58227493_58227683_58233784_58233953_58239328
ENSMUSG00000064302.14_0	chr1	+	7144	36	NIC	ENSMUSG00000064302.14	novel	7566	37	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_24	43.3379317288056	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAATTAAAAAAA	NA	False	NA	-22	True	NA	NA	NA	118317185	118537162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_118317252_118347169_118347649_118387530_118387610_118388916_118389021_118390195_118390288_118392257_118392334_118395609_118395708_118399501_118399570_118425363_118425517_118427377_118427452_118429031_118429125_118430582_118430729_118431549_118431686_118432625_118432697_118433211_118433272_118434669_118434748_118436544_118436713_118437301_118437352_118437935_118438107_118449556_118449665_118453026_118453186_118466995_118467100_118470831_118471077_118473122_118473187_118475594_118475759_118478816_118478896_118479742_118479887_118487715_118487860_118488740_118488848_118498578_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ENSMUSG00000064302.14_1	chr1	+	7172	37	FSM	ENSMUSG00000064302.14	ENSMUST00000178710.8	7566	37	394	0	-3	0	multi-exon	FALSE	canonical	0	0	junction_25	60.1851310541067	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAATTAAAAAAA	NA	False	NA	-22	True	NA	NA	NA	118317181	118537162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_118317252_118347169_118347649_118387530_118387610_118388916_118389021_118390195_118390288_118392257_118392334_118395609_118395708_118399501_118399570_118425363_118425517_118427377_118427452_118429031_118429125_118430582_118430729_118431549_118431686_118432625_118432697_118433211_118433272_118434669_118434748_118436544_118436713_118437301_118437352_118437935_118438107_118449556_118449665_118453026_118453186_118466995_118467100_118469404_118469429_118470831_118471077_118473122_118473187_118475594_118475759_118478816_118478896_118479742_118479887_118487715_118487860_118488740_118488848_118498578_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ENSMUSG00000064302.14_10	chr1	+	6792	34	NIC	ENSMUSG00000064302.14	novel	7566	37	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_22	44.0087227350178	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAATTAAAAAAA	NA	False	NA	-22	True	NA	NA	NA	118387337	118537162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_118387610_118388916_118389021_118390195_118390288_118392257_118392334_118395609_118395708_118399501_118399570_118425363_118425517_118427377_118427452_118429031_118429125_118430582_118430729_118431549_118431686_118432625_118432697_118433211_118433272_118434669_118434748_118436544_118436713_118437301_118437352_118437935_118438107_118449556_118449665_118453026_118453186_118466995_118467100_118470831_118471077_118473122_118473187_118475594_118475759_118478816_118478896_118479742_118479887_118487715_118487860_118488740_118488848_118498578_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ENSMUSG00000064302.14_12	chr1	+	6096	28	NIC	ENSMUSG00000064302.14	novel	4042	33	NA	NA	-12604	-12	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	46.6695178435304	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGCCGACCT	NA	False	NA	-9	True	NA	NA	NA	118425362	118537175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_118425517_118427377_118427452_118429031_118429125_118430582_118430729_118431549_118431686_118432625_118432697_118433211_118433272_118434669_118434748_118436544_118436713_118437301_118437352_118437935_118438107_118449556_118449665_118453026_118453186_118466995_118467100_118470831_118471077_118473122_118473187_118475594_118475759_118478816_118478896_118479742_118479887_118487715_118487860_118488740_118488848_118498578_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ENSMUSG00000064302.14_14	chr1	+	4786	16	NIC	ENSMUSG00000064302.14	novel	7566	37	NA	NA	-6794	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	58.997024407074	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAATTAAAAAAA	NA	False	NA	-22	True	NA	NA	NA	118453014	118537162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_118453186_118466995_118467100_118470831_118471077_118473122_118473187_118475594_118475759_118478816_118478896_118479742_118479887_118487715_118487860_118488740_118488848_118498578_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ENSMUSG00000064302.14_15	chr1	+	4470	14	ISM	ENSMUSG00000064302.14	ENSMUST00000178710.8	7566	37	154085	0	-4068	0	3prime_fragment	FALSE	canonical	0	0	junction_2	63.1805902334611	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAATTAAAAAAA	1058	False	NA	-22	True	NA	NA	NA	118470872	118537162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_118471077_118473122_118473187_118475594_118475759_118478816_118478896_118479742_118479887_118487715_118487860_118488740_118488848_118498578_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ENSMUSG00000064302.14_17	chr1	+	3911	10	ISM	ENSMUSG00000064302.14	ENSMUST00000204325.2	4301	15	19982	25	-2173	0	3prime_fragment	FALSE	canonical	3	204	junction_6	17.1147182345171	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAATTAAAAAAA	9976	False	NA	-22	True	NA	NA	NA	118479790	118537162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_118479887_118487715_118487860_118488740_118488848_118498578_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ENSMUSG00000064302.14_20	chr1	+	3512	7	ISM	ENSMUSG00000064302.14	ENSMUST00000204325.2	4301	15	38835	12	16680	-12	3prime_fragment	FALSE	canonical	3	204	junction_3	19.7540431867054	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGCCGACCT	NA	False	NA	-9	True	NA	NA	NA	118498643	118537175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ENSMUSG00000064302.14_21	chr1	+	3397	6	ISM	ENSMUSG00000064302.14	ENSMUST00000204325.2	4301	15	46764	19	24609	6	3prime_fragment	FALSE	canonical	3	204	junction_2	21.3391658693586	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAATTAAAAAAAAAAAAG	NA	False	NA	-16	True	NA	NA	NA	118506572	118537168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ENSMUSG00000064302.14_22	chr1	+	3128	5	ISM	ENSMUSG00000064302.14	ENSMUST00000204325.2	4301	15	49242	18	-23406	7	3prime_fragment	FALSE	canonical	3	204	junction_1	23.8537208837531	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATTAAAAAAAAAAAAGC	NA	False	NA	-15	True	NA	NA	NA	118509050	118537169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
ENSMUSG00000064302.14_24	chr1	+	1820	1	FSM	ENSMUSG00000064302.14	ENSMUST00000187575.3	4706	1	2886	0	2886	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAATTAAAAAAA	NA	False	NA	-22	True	NA	NA	NA	118535342	118537162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_118535300_118537200
ENSMUSG00000064307.14_0	chr7	-	1053	4	NIC	ENSMUSG00000064307.14	novel	821	5	NA	NA	11	-2	intron_retention	FALSE	canonical	2	8	junction_3	3.09120616516523	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGATTATAAGTCCCCTG	2509	False	NA	NA	False	AATAAA	-16	NA	101583091	101562202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_101562791_101564768_101564975_101569843_101569982_101582970
ENSMUSG00000064307.14_1	chr7	-	822	5	FSM	ENSMUSG00000064307.14	ENSMUST00000106966.8	821	5	0	-1	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.93700393700591	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGTCCCCTGTACCTTG	2525	False	NA	NA	False	AATAAA	-23	NA	101583075	101562195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101582970
ENSMUSG00000064307.14_2	chr7	-	1116	5	FSM	ENSMUSG00000064307.14	ENSMUST00000106964.8	872	5	-82	-162	11	-2	multi-exon	FALSE	canonical	1	2	junction_3	5.43139024560011	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGATTATAAGTCCCCTG	2509	False	NA	NA	False	AATAAA	-16	NA	101583091	101562202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_101562791_101564768_101564975_101569843_101569982_101570710_101570774_101582970
ENSMUSG00000064308.11_2	chr17	-	849	4	FSM	ENSMUSG00000064308.11	ENSMUST00000039846.12	865	4	8	8	8	-8	multi-exon	FALSE	canonical	3	6	junction_1	4.49691252107735	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTCCCATATAAAATTTT	NA	False	NA	-28	True	ATTAAA	-21	NA	37292121	37288600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_37288999_37289360_37289439_37289542_37289826_37292031
ENSMUSG00000064308.11_3	chr17	-	3142	3	ISM	ENSMUSG00000064308.11	ENSMUST00000039846.12	865	4	-79	8	-79	-8	intron_retention	FALSE	canonical	3	6	junction_1	4.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTCCCATATAAAATTTT	NA	False	NA	-28	True	ATTAAA	-21	NA	37292208	37288600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_37288999_37289360_37289439_37289542
ENSMUSG00000064317.6_0	chr10	+	450	1	FSM	ENSMUSG00000064317.6	ENSMUST00000072739.6	309	1	-15	-126	-15	126	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	78229138	78229588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_78229100_78229600
ENSMUSG00000064325.5_0	chr8	-	4833	1	NIC	ENSMUSG00000064325.5	novel	1173	6	NA	NA	19659	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCATGTTCTTGTGCCC	3314	False	NA	-7	True	ATTAAA	-12	NA	80697319	80692486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_80692500_80697300
ENSMUSG00000064325.5_1	chr8	-	2622	14	NIC	ENSMUSG00000064325.5	novel	9074	13	NA	NA	483	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	3.68910117177901	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTCTTGTGCCCTTTTA	4789	False	NA	-2	True	ATTAAA	-17	NA	80784152	80692481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_80693058_80699026_80699156_80701623_80701773_80713564_80713647_80715876_80716008_80716874_80716999_80719102_80719225_80723351_80723496_80724083_80724258_80724787_80724940_80770574_80770777_80771679_80771837_80778056_80778250_80783865
ENSMUSG00000064325.5_2	chr8	-	8598	13	FSM	ENSMUSG00000064325.5	ENSMUST00000079038.4	9074	13	475	1	475	-1	multi-exon	FALSE	canonical	1	1	junction_5	3.65433532488012	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTTCTTGTGCCCTTTT	4781	False	NA	-3	True	ATTAAA	-16	NA	80784160	80692482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_80699156_80701623_80701773_80713564_80713647_80715876_80716008_80716874_80716999_80719102_80719225_80723351_80723496_80724083_80724258_80724787_80724940_80770574_80770777_80771679_80771837_80778056_80778250_80783865
ENSMUSG00000064325.5_5	chr8	-	950	4	ISM	ENSMUSG00000064325.5	ENSMUST00000079038.4	9074	13	485	77980	485	-77980	5prime_fragment	FALSE	canonical	2	10	junction_2	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATGGAGATAATCTAAG	4791	False	NA	NA	False	AATAAA	-22	NA	80784150	80770461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_80770777_80771679_80771837_80778056_80778250_80783865
ENSMUSG00000064326.14_0	chr12	+	701	4	FSM	ENSMUSG00000064326.14	ENSMUST00000021728.12	924	4	222	1	-66	-1	multi-exon	FALSE	canonical	3	1700	junction_3	44.6542271235322	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGACTCCCTCCCTTCC	7077	False	NA	16	True	AATAAA	-16	NA	112611334	112615578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112611519_112613271_112613467_112614258_112614416_112615413
ENSMUSG00000064326.14_2	chr12	+	1699	3	ISM	ENSMUSG00000064326.14	ENSMUST00000021728.12	924	4	222	1	-66	-1	intron_retention	FALSE	canonical	3	1739	junction_2	34.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGACTCCCTCCCTTCC	7077	False	NA	16	True	AATAAA	-16	NA	112611334	112615578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112611519_112613271_112613467_112614258
ENSMUSG00000064326.14_8	chr12	+	4221	1	FSM	ENSMUSG00000064326.14	ENSMUST00000222729.2	1317	1	-2908	4	-43	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGACTCCCTCCCTTCC	7100	False	NA	16	True	AATAAA	-16	NA	112611357	112615578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112611400_112615600
ENSMUSG00000064337.1_0	chrM	+	400	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	243	312	243	-312	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAGTAAGCAAAAGAAT	20	False	NA	-82	True	AAAAAG	-3	NA	312	712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_300_700
ENSMUSG00000064337.1_1	chrM	+	235	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	714	6	714	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATCATAGTGTAGCTTA	90	False	NA	-53	True	NA	NA	NA	783	1018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_800_1000
ENSMUSG00000064341.1_0	chrM	+	950	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	1	6	1	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	7393	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAGAAATATGTCTGATA	-1	True	NA	-23	True	NA	NA	NA	2751	3701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_2800_3700
ENSMUSG00000064345.1_0	chrM	+	479	1	FSM	ENSMUSG00000064345.1	ENSMUST00000082396.1	1038	1	556	3	556	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	650	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAGTTTAGGATATACTA	54	False	NA	-30	True	NA	NA	NA	4469	4948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_4500_4900
ENSMUSG00000064349.1_0	chrM	-	284	1	FSM	ENSMUSG00000064348.1	ENSMUST00000082399.1	71	1	-96	-117	-96	117	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTAGTATATCCTAAACTT	9832	False	NA	46	True	NA	NA	NA	5255	4971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_-_5000_5300
ENSMUSG00000064351.1_0	chrM	+	1256	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	355	-66	355	66	mono-exon	FALSE	NA	NA	NA	NA	NA	9460	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAGATATTAGTAAAATC	276	False	NA	NA	False	NA	NA	NA	5682	6938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_5700_6900
ENSMUSG00000064354.1_0	chrM	+	682	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	0	2	0	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	779	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTCACTATGAAGCTAAG	-1	True	NA	NA	False	ACTAAA	-33	NA	7012	7694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_7000_7700
ENSMUSG00000064357.1_0	chrM	+	838	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	4	-161	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6269	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATGACCCACCAAACTCA	-11	True	NA	NA	False	NA	NA	NA	7765	8603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_7800_8600
ENSMUSG00000064358.1_0	chrM	+	783	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	0	1	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	-2	True	NA	NA	False	NA	NA	NA	8606	9389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_8600_9400
ENSMUSG00000064360.1_0	chrM	+	247	1	FSM	ENSMUSG00000064360.1	ENSMUST00000082411.1	348	1	94	7	94	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTAAATGGTAATTAGTT	92	False	NA	NA	False	AAAAAG	-14	NA	9552	9799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_9600_9800
ENSMUSG00000064363.1_1	chrM	+	1663	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-290	5	-290	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3030	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGTGAATATAGTTTAC	-1	True	NA	8	True	NA	NA	NA	9876	11539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_9900_11500
ENSMUSG00000064367.1_0	chrM	+	1919	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	479	-574	479	574	mono-exon	FALSE	NA	NA	NA	NA	NA	802	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTAATGACAAACATACGA	149	False	NA	82	True	NA	NA	NA	12220	14139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_12200_14100
ENSMUSG00000064368.1_0	chrM	-	770	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	0	-251	0	251	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATGGATTTGCTTTATT	-3	True	NA	NA	False	AGTAAA	-13	NA	14070	13300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_-_13300_14100
ENSMUSG00000064370.1_0	chrM	+	1142	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	2	0	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12084	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTCTTGATAGTATAAACA	-2	True	NA	10	True	ACTAAA	-10	NA	14144	15286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrM_+_14100_15300
ENSMUSG00000064373.14_0	chr15	+	2008	5	FSM	ENSMUSG00000064373.14	ENSMUST00000159216.10	2085	5	76	1	-1	-1	multi-exon	FALSE	canonical	2	6	junction_1	1.78535710713571	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTGTGTGTCTTTATTG	9353	False	NA	13	True	AATAAA	-18	NA	3300478	3309988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_3300535_3304142_3304359_3305048_3305262_3306638_3306757_3308583
ENSMUSG00000064890.3_0	chr3	-	105	1	FSM	ENSMUSG00000064890.3	ENSMUST00000082956.3	108	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACAGAATGCCAACTTTA	NA	False	NA	NA	False	NA	NA	NA	99615162	99615057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_99615100_99615200
ENSMUSG00000065701.3_0	chr6	-	108	1	FSM	ENSMUSG00000065701.3	ENSMUST00000083767.3	112	1	2	2	2	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGAAACTTACATCTCCC	NA	False	NA	-4	True	NA	NA	NA	47765112	47765004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_47765000_47765100
ENSMUSG00000065738.3_0	chr3	-	80	1	FSM	ENSMUSG00000065738.3	ENSMUST00000083804.3	81	1	2	-1	2	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGTTTTACCTAAACTT	7421	False	NA	NA	False	NA	NA	NA	153617325	153617245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_153617200_153617300
ENSMUSG00000065952.14_0	chr8	+	831	2	FSM	ENSMUSG00000065952.14	ENSMUST00000138454.2	637	2	-11	-183	-11	183	multi-exon	FALSE	canonical	3	29	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTTTTCTGCCTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	3617978	3623833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3618097_3623120
ENSMUSG00000065952.14_4	chr8	+	156	1	ISM	ENSMUSG00000065952.14	ENSMUST00000153341.8	960	3	10428	19	-1307	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAACTGCATTTTATT	6818	False	NA	5	True	ATTAAA	-33	NA	3628422	3628578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_3628400_3628600
ENSMUSG00000065952.14_6	chr8	+	944	3	FSM	ENSMUSG00000065952.14	ENSMUST00000153341.8	960	3	-11	27	-6	-27	multi-exon	FALSE	canonical	3	24	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGATCATTTAAAACTGC	NA	False	NA	-3	True	ATTAAA	-25	NA	3617983	3628570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3618097_3623120_3623222_3627840
ENSMUSG00000065954.12_0	chr8	-	2883	1	ISM	ENSMUSG00000065954.12	ENSMUST00000084512.11	6471	11	44012	3	5134	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCGGGGTGTGTTGTCT	NA	False	NA	-3	True	AATAAA	-18	NA	25647453	25644570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_25644600_25647500
ENSMUSG00000065954.12_10	chr8	-	7467	13	NIC	ENSMUSG00000065954.12	novel	7788	13	NA	NA	5	-3	combination_of_known_splicesites	FALSE	canonical	3	6	junction_12	23.0523257443196	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCGGGGTGTGTTGTCT	NA	False	NA	-3	True	AATAAA	-18	NA	25730912	25644570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25671838_25672947_25690106_25690223_25730809
ENSMUSG00000065954.12_2	chr8	-	6241	11	NIC	ENSMUSG00000065954.12	novel	6471	11	NA	NA	6	-4	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	20.3492014585339	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATCCGGGGTGTGTTGTC	NA	False	NA	-4	True	AATAAA	-17	NA	25730911	25644571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25730809
ENSMUSG00000065954.12_21	chr8	-	5029	3	ISM	ENSMUSG00000065954.12	ENSMUST00000084030.6	7788	13	55	23832	-38	4138	5prime_fragment	FALSE	canonical	0	0	junction_2	16.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAATCTGGTCCAGCGTG	NA	False	NA	NA	False	AATAAA	-9	NA	25691503	25668399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_25672947_25690106_25690223_25691137
ENSMUSG00000065954.12_23	chr8	-	2025	1	FSM	ENSMUSG00000065954.12	ENSMUST00000209633.2	1050	1	-980	5	19	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACACTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-23	NA	25691539	25689514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_25689500_25691500
ENSMUSG00000065954.12_5	chr8	-	7782	13	FSM	ENSMUSG00000065954.12	ENSMUST00000084030.6	7788	13	1	5	1	-5	multi-exon	FALSE	canonical	0	0	junction_12	24.1986856851542	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCATCCGGGGTGTGTTGT	NA	False	NA	-5	True	AATAAA	-16	NA	25691557	25644572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25671838_25672947_25690106_25690223_25691137
ENSMUSG00000065954.12_6	chr8	-	6731	11	ISM	ENSMUSG00000065954.12	ENSMUST00000084030.6	7788	13	19129	3	-14880	-3	3prime_fragment	TRUE	canonical	3	32	junction_10	16.0062487797735	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCGGGGTGTGTTGTCT	NA	False	NA	-3	True	AATAAA	-18	NA	25672429	25644570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25671838
ENSMUSG00000065954.12_7	chr8	-	6556	11	FSM	ENSMUSG00000065954.12	ENSMUST00000084512.11	6471	11	-94	9	-1	-9	multi-exon	FALSE	canonical	0	0	junction_10	23.6550206087418	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTGCATCCGGGGTGTG	NA	False	NA	-9	True	AATAAA	-12	NA	25691559	25644576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25691137
ENSMUSG00000065968.9_0	chr16	-	3011	1	FSM	ENSMUSG00000065968.9	ENSMUST00000178021.2	1823	1	-88	-1100	-88	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAATTGTCGTGGCTTCA	NA	False	NA	NA	False	NA	NA	NA	13802573	13799562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_13799600_13802600
ENSMUSG00000065979.13_0	chr16	-	2642	4	FSM	ENSMUSG00000065979.13	ENSMUST00000096272.11	2663	4	15	6	-10	0	multi-exon	FALSE	canonical	3	85	junction_3	6.59966329107444	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAATAAAAATAAA	NA	False	NA	-46	True	NA	NA	NA	11727272	11621590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_11623448_11646038_11646462_11705441_11705661_11727129
ENSMUSG00000065979.13_2	chr16	-	1462	1	Genic_Genomic	ENSMUSG00000065979.13	novel	NA	NA	NA	NA	104225	11	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACAATAAAGACTTCC	NA	False	NA	-29	True	NA	NA	NA	11623035	11621573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_-_11621600_11623000
ENSMUSG00000065979.13_5	chr16	-	2389	3	ISM	ENSMUSG00000065979.13	ENSMUST00000121750.2	2614	4	21729	7	21703	-7	3prime_fragment	FALSE	canonical	3	95	junction_2	3	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATAAAATAA	NA	False	NA	-53	True	NA	NA	NA	11705557	11621597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_11623448_11646038_11646462_11705441
ENSMUSG00000065979.13_9	chr16	-	2006	2	ISM	ENSMUSG00000065979.13	ENSMUST00000121750.2	2614	4	81092	7	81066	-7	3prime_fragment	FALSE	canonical	3	101	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATAAAATAA	NA	False	NA	-53	True	NA	NA	NA	11646194	11621597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_11623448_11646038
ENSMUSG00000065990.13_1	chr4	+	765	4	FSM	ENSMUSG00000065990.13	ENSMUST00000084097.12	1159	4	323	71	5	-2	multi-exon	FALSE	canonical	3	1785	junction_1	303.738191357111	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTCTAGGCCGACCTA	NA	False	NA	25	True	AATAAA	-15	NA	155916130	155917516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155916193_155916439_155916528_155916808_155917255_155917347
ENSMUSG00000065990.13_11	chr4	+	878	4	NIC	ENSMUSG00000065990.13	novel	773	4	NA	NA	6	-9	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	1112.8534894086	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACTCAATTATTCTAGGC	NA	False	NA	18	True	AATAAA	-8	NA	155916131	155917509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155916224_155916349_155916528_155916808_155917255_155917347
ENSMUSG00000065990.13_19	chr4	+	452	2	ISM	ENSMUSG00000065990.13	ENSMUST00000105592.8	1029	3	849	9	839	-9	3prime_fragment	FALSE	canonical	3	2475	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACTCAATTATTCTAGGC	NA	False	NA	18	True	AATAAA	-8	NA	155916964	155917509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_155917255_155917347
ENSMUSG00000065990.13_2	chr4	+	1001	3	FSM	ENSMUSG00000065990.13	ENSMUST00000105592.8	1029	3	22	6	12	-6	multi-exon	FALSE	canonical	3	2371	junction_1	52	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAATTATTCTAGGCCGA	NA	False	NA	21	True	AATAAA	-11	NA	155916137	155917512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155916528_155916808_155917255_155917347
ENSMUSG00000065990.13_3	chr4	+	795	4	FSM	ENSMUSG00000065990.13	ENSMUST00000105591.2	773	4	6	-28	6	-2	multi-exon	FALSE	canonical	3	281	junction_1	1010.64072086309	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTCTAGGCCGACCTA	NA	False	NA	25	True	AATAAA	-15	NA	155916131	155917516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155916224_155916439_155916528_155916808_155917255_155917347
ENSMUSG00000065990.13_8	chr4	+	847	4	NIC	ENSMUSG00000065990.13	novel	1159	4	NA	NA	6	-9	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	1100.13494121807	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACTCAATTATTCTAGGC	NA	False	NA	18	True	AATAAA	-8	NA	155916131	155917509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_155916193_155916349_155916528_155916808_155917255_155917347
ENSMUSG00000065999.14_227	chr4	+	2774	5	NIC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	1	-5	combination_of_known_splicesites	TRUE	canonical	0	0	junction_2	39.4104998699585	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147637734	147669650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_147637884_147646898_147646979_147661528_147661587_147665698_147665826_147667290
ENSMUSG00000065999.14_231	chr4	+	2694	4	FSM	ENSMUSG00000065999.14	ENSMUST00000139784.8	628	4	1	-2067	1	-5	multi-exon	FALSE	canonical	3	55	junction_1	19.7540431867054	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147637734	147669650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_147637884_147661528_147661587_147665698_147665826_147667290
ENSMUSG00000065999.14_256	chr4	+	916	1	ISM	ENSMUSG00000065999.14	ENSMUST00000081742.7	2762	6	30939	5	30939	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147668734	147669650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_147668700_147669600
ENSMUSG00000066000.13_1	chr4	-	3142	2	ISM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	26196	1	26184	-1	3prime_fragment	FALSE	canonical	3	457	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTGACTTGCTTGTTT	1886	False	NA	-8	True	AATAAA	-15	NA	147700769	147696396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_147698506_147699736
ENSMUSG00000066000.13_3	chr4	-	2558	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	-3	3	2	-3	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAATTTTGACTTGCTTGT	NA	False	NA	-10	True	AATAAA	-13	NA	147726968	147696398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
ENSMUSG00000066000.13_6	chr4	-	1738	1	ISM	ENSMUSG00000066000.13	ENSMUST00000105720.8	2594	5	28836	3	28819	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTGACTTGCTTGTTT	4521	False	NA	-8	True	AATAAA	-15	NA	147698134	147696396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_147696400_147698100
ENSMUSG00000066000.13_8	chr4	-	2588	5	FSM	ENSMUSG00000066000.13	ENSMUST00000105720.8	2594	5	1	5	1	-3	multi-exon	FALSE	canonical	3	24	junction_4	194.219592214586	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAATTTTGACTTGCTTGT	NA	False	NA	-10	True	AATAAA	-13	NA	147726969	147696398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
ENSMUSG00000066007.16_28	chr4	+	4246	5	FSM	ENSMUSG00000066007.16	ENSMUST00000168483.9	4244	5	-2	0	-2	0	multi-exon	FALSE	canonical	3	31	junction_2	207.21064161862	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	146093391	146135319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535
ENSMUSG00000066007.16_8	chr4	+	4205	5	NNC	ENSMUSG00000066007.16	novel	724	2	NA	NA	-55160	-4	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	214.304106353565	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAACAAGGTTGACTTGG	NA	False	NA	NA	False	AATAAA	-9	NA	146038233	146135315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_146038353_146094927_146095022_146126781_146126867_146129876_146130004_146131535
ENSMUSG00000066007.16_84	chr4	+	2379	1	ISM	ENSMUSG00000066007.16	ENSMUST00000168483.9	4244	5	39547	0	34462	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	146132940	146135319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_146132900_146135300
ENSMUSG00000066009.9_0	chr4	+	2842	4	FSM	ENSMUSG00000066009.9	ENSMUST00000091878.6	2798	4	-47	3	0	-3	multi-exon	FALSE	canonical	3	78	junction_2	56.5115524079418	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146033867	146063188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726
ENSMUSG00000066009.9_1	chr4	+	2673	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	1	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	82.8322853723112	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146033868	146063188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061347_146061514
ENSMUSG00000066009.9_47	chr4	+	2841	4	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	4290	-3	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	76.4852927038918	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146038204	146063188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_146038353_146054375_146054480_146058453_146058581_146060726
ENSMUSG00000066009.9_5	chr4	+	2714	3	NIC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	1	-3	combination_of_known_splicesites	FALSE	canonical	3	72	junction_2	50	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146033868	146063188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_146034017_146054375_146054480_146060726
ENSMUSG00000066009.9_62	chr4	+	1760	1	ISM	ENSMUSG00000066009.9	ENSMUST00000091878.6	2798	4	27514	3	27514	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146061428	146063188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_146061400_146063200
ENSMUSG00000066026.15_0	chr4	+	2052	6	FSM	ENSMUSG00000066026.15	ENSMUST00000154208.8	2337	6	-285	570	-35	0	multi-exon	FALSE	canonical	3	137	junction_1	25.4982352330509	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTTCCTTCGTTCACGT	5661	False	NA	6	True	AATAAA	-13	NA	144619361	144654209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_144620280_144645220_144645365_144645954_144646075_144646410_144646650_144650475_144650602_144653704
ENSMUSG00000066026.15_2	chr4	+	1407	7	FSM	ENSMUSG00000066026.15	ENSMUST00000171001.8	1349	7	-64	6	-64	0	multi-exon	FALSE	canonical	1	1	junction_1	68.47627326308	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTTCCTTCGTTCACGT	5632	False	NA	6	True	AATAAA	-13	NA	144619332	144654209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_144619481_144620154_144620280_144645220_144645365_144645954_144646075_144646410_144646650_144650475_144650602_144653704
ENSMUSG00000066026.15_3	chr4	+	1558	7	NIC	ENSMUSG00000066026.15	novel	1780	6	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	82.6997581616778	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTTCCTTCGTTCACGT	5636	False	NA	6	True	AATAAA	-13	NA	144619336	144654209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_144619481_144620154_144620280_144645220_144645365_144645799_144646075_144646410_144646650_144650475_144650602_144653704
ENSMUSG00000066036.15_101	chr4	+	2913	19	ISM	ENSMUSG00000066036.15	ENSMUST00000165860.8	15798	106	86584	7	3984	-7	3prime_fragment	FALSE	canonical	3	267	junction_9	52.1600102249479	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGGAAAGGGGTCTAGC	444	False	NA	15	True	AATAAA	-16	NA	139194553	139216834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139194646_139195316_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ENSMUSG00000066036.15_102	chr4	+	2741	18	ISM	ENSMUSG00000066036.15	ENSMUST00000165860.8	15798	106	87429	5	4829	-5	3prime_fragment	FALSE	canonical	3	267	junction_8	51.5410945660426	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGAAAGGGGTCTAGCTG	1289	False	NA	17	True	AATAAA	-18	NA	139195398	139216836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ENSMUSG00000066036.15_106	chr4	+	2529	16	ISM	ENSMUSG00000066036.15	ENSMUST00000165860.8	15798	106	89032	5	6432	-5	3prime_fragment	FALSE	canonical	3	267	junction_6	50.682629064492	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGAAAGGGGTCTAGCTG	2892	False	NA	17	True	AATAAA	-18	NA	139197001	139216836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ENSMUSG00000066036.15_108	chr4	+	2397	15	ISM	ENSMUSG00000066036.15	ENSMUST00000165860.8	15798	106	89599	5	-6795	-5	3prime_fragment	FALSE	canonical	3	267	junction_5	50.1446886112414	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGAAAGGGGTCTAGCTG	3459	False	NA	17	True	AATAAA	-18	NA	139197568	139216836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ENSMUSG00000066036.15_110	chr4	+	2207	13	ISM	ENSMUSG00000066036.15	ENSMUST00000165860.8	15798	106	91084	7	-5310	-7	3prime_fragment	FALSE	canonical	3	267	junction_3	48.3741207212654	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGGAAAGGGGTCTAGC	738	False	NA	15	True	AATAAA	-16	NA	139199053	139216834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ENSMUSG00000066036.15_111	chr4	+	2008	12	ISM	ENSMUSG00000066036.15	ENSMUST00000165860.8	15798	106	91909	1	-4485	-1	3prime_fragment	FALSE	canonical	3	267	junction_2	50.4513512502411	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGGGTCTAGCTGCTGC	598	False	NA	21	True	AATAAA	-22	NA	139199878	139216840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ENSMUSG00000066036.15_73	chr4	+	5120	34	ISM	ENSMUSG00000066036.15	ENSMUST00000165860.8	15798	106	74886	5	-7714	-5	3prime_fragment	FALSE	canonical	3	159	junction_1	70.1651861801763	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGAAAGGGGTCTAGCTG	NA	False	NA	17	True	AATAAA	-18	NA	139182855	139216836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139182953_139184842_139185083_139185405_139185545_139186109_139186236_139186336_139186466_139187309_139187654_139189138_139189230_139189488_139189574_139189712_139189841_139190590_139190721_139190808_139190967_139191295_139191406_139191852_139191995_139192269_139192352_139192604_139192779_139194523_139194646_139195316_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ENSMUSG00000066036.15_81	chr4	+	4255	29	ISM	ENSMUSG00000066036.15	ENSMUST00000165860.8	15798	106	79476	3	-3124	-3	3prime_fragment	FALSE	canonical	3	204	junction_3	65.7886225508853	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAAGGGGTCTAGCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	139187445	139216838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139187654_139189138_139189230_139189488_139189574_139189712_139189841_139190590_139190721_139190808_139190967_139191295_139191406_139191852_139191995_139192269_139192352_139192604_139192779_139194523_139194646_139195316_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ENSMUSG00000066036.15_90	chr4	+	3705	25	ISM	ENSMUSG00000066036.15	ENSMUST00000165860.8	15798	106	82657	5	57	-5	3prime_fragment	FALSE	canonical	3	210	junction_1	62.3590493967529	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGAAAGGGGTCTAGCTG	2408	False	NA	17	True	AATAAA	-18	NA	139190626	139216836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139190721_139190808_139190967_139191295_139191406_139191852_139191995_139192269_139192352_139192604_139192779_139194523_139194646_139195316_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ENSMUSG00000066036.15_91	chr4	+	3595	24	ISM	ENSMUSG00000066036.15	ENSMUST00000165860.8	15798	106	82855	5	255	-5	3prime_fragment	FALSE	canonical	3	232	junction_3	60.0619088295529	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGAAAGGGGTCTAGCTG	2606	False	NA	17	True	AATAAA	-18	NA	139190824	139216836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139190967_139191295_139191406_139191852_139191995_139192269_139192352_139192604_139192779_139194523_139194646_139195316_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
ENSMUSG00000066037.15_0	chr4	+	2656	11	FSM	ENSMUSG00000066037.15	ENSMUST00000105850.8	2683	11	18	9	18	-9	multi-exon	FALSE	canonical	3	160	junction_1	130.381325349914	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATCACCTATTTCAAA	NA	False	NA	23	True	AATAAA	-17	NA	136038296	136067983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_136038401_136041400_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ENSMUSG00000066037.15_1	chr4	+	2659	11	FSM	ENSMUSG00000066037.15	ENSMUST00000148843.10	21452	11	18	18775	18	-9	multi-exon	FALSE	canonical	3	130	junction_1	138.01771625411	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATCACCTATTTCAAA	NA	False	NA	23	True	AATAAA	-17	NA	136038296	136067983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_136038401_136041397_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ENSMUSG00000066037.15_2	chr4	+	2492	10	FSM	ENSMUSG00000066037.15	ENSMUST00000131671.8	2543	10	42	9	16	-9	multi-exon	FALSE	canonical	3	289	junction_1	97.5394823509124	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATCACCTATTTCAAA	NA	False	NA	23	True	AATAAA	-17	NA	136038294	136067983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_136038401_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ENSMUSG00000066037.15_4	chr4	+	2499	10	FSM	ENSMUSG00000066037.15	ENSMUST00000084219.12	2647	10	-43	191	14	-9	multi-exon	FALSE	canonical	3	84	junction_2	166.354225660371	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATCACCTATTTCAAA	NA	False	NA	23	True	AATAAA	-17	NA	136038292	136067983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_136038401_136043671_136043796_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ENSMUSG00000066042.5_0	chr4	-	1652	3	FSM	ENSMUSG00000066042.5	ENSMUST00000102567.4	1675	3	23	0	23	0	multi-exon	FALSE	canonical	3	250	junction_2	8.5	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	1070	False	NA	-15	True	AATAAA	-13	NA	132191209	132186041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132187425_132190175_132190320_132191084
ENSMUSG00000066042.5_2	chr4	-	1611	4	NNC	ENSMUSG00000066042.5	novel	1675	3	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	122.055542912051	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	1071	False	NA	-15	True	AATAAA	-13	NA	132191208	132186041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_132186356_132186395_132187425_132190175_132190320_132191084
ENSMUSG00000066042.5_7	chr4	-	1217	1	ISM	ENSMUSG00000066042.5	ENSMUST00000102567.4	1675	3	3974	0	3384	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	5021	False	NA	-15	True	AATAAA	-13	NA	132187258	132186041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132186000_132187300
ENSMUSG00000066043.14_0	chr4	-	4522	14	FSM	ENSMUSG00000066043.14	ENSMUST00000102568.10	4614	14	82	10	34	-3	multi-exon	FALSE	canonical	2	21	junction_11	24.1391430016078	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAAAAAAACTGAATTTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	132149718	132083243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132110592_132110674_132114202_132114377_132140380_132140435_132149655
ENSMUSG00000066043.14_1	chr4	-	4436	13	FSM	ENSMUSG00000066043.14	ENSMUST00000084170.12	4483	13	41	6	36	-6	multi-exon	FALSE	canonical	3	61	junction_10	11.8591268181468	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATCAAAAAAACTGAATT	NA	False	NA	NA	False	ATTAAA	-10	NA	132149716	132083246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132114202_132114377_132140380_132140435_132149655
ENSMUSG00000066043.14_17	chr4	-	3868	9	ISM	ENSMUSG00000066043.14	ENSMUST00000084249.11	2349	13	20777	-2313	-6903	-6	3prime_fragment	FALSE	canonical	3	73	junction_8	9.68810481982931	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATCAAAAAAACTGAATT	NA	False	NA	NA	False	ATTAAA	-10	NA	132104745	132083246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490
ENSMUSG00000066043.14_6	chr4	-	1859	1	ISM	ENSMUSG00000066043.14	ENSMUST00000102568.10	4614	14	64698	10	12740	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAAAAAAACTGAATTTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	132085102	132083243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132083200_132085100
ENSMUSG00000066043.14_7	chr4	-	2720	6	ISM	ENSMUSG00000066043.14	ENSMUST00000084249.11	2349	13	30272	-2313	2592	-6	3prime_fragment	FALSE	canonical	3	78	junction_4	7.61577310586391	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATCAAAAAAACTGAATT	NA	False	NA	NA	False	ATTAAA	-10	NA	132095250	132083246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212
ENSMUSG00000066057.8_1	chr17	-	4478	4	NNC	ENSMUSG00000066057.8	novel	1853	4	NA	NA	10	18306	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	11.5854314646552	59	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTCACCTGTCATCCATT	NA	False	NA	-14	True	AATAAA	-8	NA	95142216	95122179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_95126373_95127763_95127825_95128042_95128170_95142119
ENSMUSG00000066057.8_5	chr17	-	4305	3	ISM	ENSMUSG00000066057.8	ENSMUST00000234189.2	1909	5	21	54843	21	18271	5prime_fragment	FALSE	canonical	3	15	junction_2	22	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGACTGGTTATTTGATC	NA	False	NA	-49	True	AATGAA	-16	NA	95142205	95122214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_95126373_95127763_95127825_95142119
ENSMUSG00000066058.12_0	chr4	+	1671	4	FSM	ENSMUSG00000066058.12	ENSMUST00000094823.4	4168	4	-88	2585	7	-2	multi-exon	FALSE	canonical	0	0	junction_3	0.816496580927726	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTGACATCATCCTATC	3312	False	NA	NA	False	NA	NA	NA	119112617	119117050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_119112993_119114082_119114248_119114348_119114434_119116004
ENSMUSG00000066116.4_0	chr4	-	126	1	FSM	ENSMUSG00000066116.4	ENSMUST00000084445.4	354	1	269	-41	269	41	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	83423506	83423380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_83423400_83423500
ENSMUSG00000066148.4_0	chr4	+	2691	14	FSM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	13	2519	13	1140	multi-exon	FALSE	canonical	3	246	junction_9	29.7191986640079	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAACTGGAAAAAATCC	NA	False	NA	27	True	ATTAAA	-15	NA	62327046	62342708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
ENSMUSG00000066148.4_17	chr4	+	2484	13	ISM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	893	2519	893	1140	3prime_fragment	FALSE	canonical	3	246	junction_8	29.3005261613735	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAACTGGAAAAAATCC	NA	False	NA	27	True	ATTAAA	-15	NA	62327926	62342708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
ENSMUSG00000066148.4_27	chr4	+	538	1	ISM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	15142	2514	2095	1145	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTGGAAAAAATCCTAATT	NA	False	NA	32	True	ATTAAA	-20	NA	62342175	62342713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_62342200_62342700
ENSMUSG00000066148.4_3	chr4	+	2801	13	NIC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	17	1140	intron_retention	FALSE	canonical	3	246	junction_9	29.3005261613735	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAACTGGAAAAAATCC	NA	False	NA	27	True	ATTAAA	-15	NA	62327050	62342708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340760_62340839_62340959_62341454
ENSMUSG00000066149.12_0	chr4	-	1568	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	21	-770	4	770	multi-exon	FALSE	canonical	3	361	junction_3	9.67241208569794	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGTACATAAGACTCTT	2685	False	NA	NA	False	AATAAA	-14	NA	62326858	62312049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
ENSMUSG00000066149.12_2	chr4	-	1477	3	FSM	ENSMUSG00000066149.12	ENSMUST00000107459.2	654	3	4	-827	4	776	multi-exon	FALSE	canonical	3	31	junction_2	175	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAAGACTCTTTATTAT	2685	False	NA	NA	False	AATAAA	-20	NA	62326858	62312043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62313259_62320960_62321153_62326788
ENSMUSG00000066149.12_3	chr4	-	1409	2	ISM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	5726	-777	2598	777	3prime_fragment	FALSE	canonical	3	381	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAGACTCTTTATTATT	8390	False	NA	NA	False	AATAAA	-21	NA	62321153	62312042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_62313259_62320960
ENSMUSG00000066149.12_6	chr4	-	3103	3	ISM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	1708	7	-1420	-7	3prime_fragment	FALSE	canonical	3	381	junction_1	0.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAATGTGAGACGTCCT	4372	False	NA	NA	False	AATAAA	-11	NA	62325171	62312826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_62313259_62320960_62321153_62322692
ENSMUSG00000066150.13_0	chr4	+	3712	5	FSM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	-4	10	-4	-10	multi-exon	FALSE	canonical	3	753	junction_3	40.1932830209228	1136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGATTCTATGCATGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	62278959	62309996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834
ENSMUSG00000066150.13_15	chr4	+	2413	1	ISM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	28624	6	3850	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTATGCATGTCTGTCTA	9362	False	NA	17	True	AATAAA	-17	NA	62307587	62310000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_62307600_62310000
ENSMUSG00000066151.13_0	chr4	-	4261	28	FSM	ENSMUSG00000066151.13	ENSMUST00000084527.10	4264	28	-13	16	11	-16	multi-exon	FALSE	canonical	3	62	junction_18	17.8933741789013	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGGTTTCCAGGACTGT	6981	False	NA	-17	True	AATAAA	-30	NA	62278720	62218594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62239195_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
ENSMUSG00000066151.13_11	chr4	-	4206	28	NIC	ENSMUSG00000066151.13	novel	4264	28	NA	NA	20	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	24.7540992988791	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGACTGTTGTGTTCCT	7015	False	NA	-8	True	AATAAA	-39	NA	62278686	62218585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62239225_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
ENSMUSG00000066151.13_30	chr4	-	2365	9	ISM	ENSMUSG00000066151.13	ENSMUST00000139308.2	3279	18	17796	16	17796	-16	3prime_fragment	FALSE	canonical	3	79	junction_7	18.4013416630419	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGGTTTCCAGGACTGT	NA	False	NA	-17	True	AATAAA	-30	NA	62232735	62218594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490
ENSMUSG00000066151.13_4	chr4	-	1829	6	ISM	ENSMUSG00000066151.13	ENSMUST00000139308.2	3279	18	25257	4	25257	-4	3prime_fragment	FALSE	canonical	3	103	junction_3	12.7530388535439	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGACTGTTGTGTTCCTTTT	3276	False	NA	-5	True	AATAAA	-42	NA	62225274	62218582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131
ENSMUSG00000066151.13_48	chr4	-	4298	19	FSM	ENSMUSG00000066151.13	ENSMUST00000107461.2	2337	19	54	-2015	-10	-1	multi-exon	FALSE	canonical	3	62	junction_9	12.2877033786216	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAACAAGTAGTGCTCCAA	6984	False	NA	NA	False	NA	NA	NA	62278717	62236863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
ENSMUSG00000066152.12_0	chr4	+	1791	4	FSM	ENSMUSG00000066152.12	ENSMUST00000084530.9	1820	4	25	4	25	-4	multi-exon	FALSE	canonical	3	73	junction_3	15.369522511198	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTGTGTTTGTTGGTCCG	NA	False	NA	5	True	AATAAA	-16	NA	62204710	62216644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_62204812_62210868_62210936_62214123_62214314_62215211
ENSMUSG00000066170.8_0	chr17	+	1834	1	FSM	ENSMUSG00000066170.8	ENSMUST00000095448.5	2055	1	-34	255	-34	-255	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCTTAGTCATGATGTT	NA	False	NA	NA	False	NA	NA	NA	28742232	28744066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_28742200_28744100
ENSMUSG00000066175.3_0	chr7	-	650	1	FSM	ENSMUSG00000066175.3	ENSMUST00000084587.2	348	1	9	-311	9	311	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTTAGCTACATCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	126248733	126248083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126248100_126248700
ENSMUSG00000066191.13_1	chr4	-	3783	16	FSM	ENSMUSG00000066191.13	ENSMUST00000229609.2	3438	16	89	-434	-32	-5	multi-exon	FALSE	canonical	1	1	junction_8	1.85711843695788	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCCCCTGAGTTTGTG	-12	True	NA	NA	False	ATTAAA	-9	NA	47057338	47015693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_47016817_47017522_47017620_47023743_47023861_47025685_47025754_47027100_47027285_47030663_47030852_47033115_47033270_47035715_47035920_47038913_47038964_47039669_47039869_47041014_47041164_47043535_47043643_47044819_47045025_47046009_47046055_47049068_47049572_47056948
ENSMUSG00000066191.13_6	chr4	-	3805	16	NIC	ENSMUSG00000066191.13	novel	3980	17	NA	NA	-18	1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	1.91369334592098	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGAGTTTGTGCTCTTT	2	True	NA	NA	False	ATTAAA	-15	NA	47057324	47015687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_47016817_47017492_47017620_47023743_47023861_47025685_47025754_47027100_47027285_47030663_47030852_47033115_47033270_47035715_47035920_47038913_47038964_47039669_47039869_47041014_47041164_47043535_47043643_47044819_47045025_47046009_47046055_47049068_47049572_47056948
ENSMUSG00000066232.5_0	chr7	+	4232	25	FSM	ENSMUSG00000066232.5	ENSMUST00000084731.5	4763	25	41	490	0	4	multi-exon	FALSE	canonical	0	0	junction_2	191.489515052391	1241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTGATCTGATTGCAA	7239	False	NA	25	True	ATTAAA	-20	NA	109617521	109655326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
ENSMUSG00000066232.5_132	chr7	+	1183	1	ISM	ENSMUSG00000066232.5	ENSMUST00000084731.5	4763	25	37146	7	25354	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAAACCCTTTGTGTTGT	NA	False	NA	NA	False	AATGAA	-32	NA	109654626	109655809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_109654600_109655800
ENSMUSG00000066232.5_5	chr7	+	4225	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	231.289497377685	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTCTTGATCTGATT	7239	False	NA	21	True	ATTAAA	-16	NA	109617521	109655322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651920_109652125_109653206_109653324_109654223
ENSMUSG00000066233.7_0	chr9	+	1022	3	FSM	ENSMUSG00000066233.7	ENSMUST00000084733.7	1041	3	16	3	16	-3	multi-exon	FALSE	canonical	3	26	junction_2	1.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTACTGGATATGGAAT	NA	False	NA	NA	False	AATAAA	-13	NA	122850406	122852549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_122850636_122851230_122851378_122851903
ENSMUSG00000066235.8_0	chr9	-	2396	3	FSM	ENSMUSG00000066235.8	ENSMUST00000217610.2	2413	3	12	5	4	0	multi-exon	FALSE	canonical	2	4	junction_2	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAAGTCTTTTTCTGAT	NA	False	NA	-5	True	ATTAAA	-16	NA	121825067	121810676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_121812890_121813165_121813223_121824941
ENSMUSG00000066235.8_1	chr9	-	2443	3	NIC	ENSMUSG00000066235.8	novel	2504	4	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGTCTTTTTCTGATGC	NA	False	NA	-3	True	ATTAAA	-18	NA	121825063	121810674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_121812890_121823910_121824017_121824941
ENSMUSG00000066235.8_3	chr9	-	2345	2	FSM	ENSMUSG00000066235.8	ENSMUST00000084743.7	2365	2	18	2	-2	0	multi-exon	FALSE	canonical	3	12	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAAGTCTTTTTCTGAT	NA	False	NA	-5	True	ATTAAA	-16	NA	121825073	121810676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_121812890_121824941
ENSMUSG00000066278.7_0	chr5	-	2512	4	FSM	ENSMUSG00000066278.7	ENSMUST00000040967.9	2522	4	7	3	-5	-3	multi-exon	FALSE	canonical	3	122	junction_3	15.8394724940223	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTTTGCTGTGTTTCTCT	2243	False	NA	-4	True	AATAAA	-17	NA	124170326	124142706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_124144802_124145671_124145755_124148750_124148923_124170164
ENSMUSG00000066278.7_2	chr5	-	1774	1	ISM	ENSMUSG00000066278.7	ENSMUST00000040967.9	2522	4	25855	1	5298	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGTGTTTCTCTCA	8357	False	NA	-2	True	AATAAA	-19	NA	124144478	124142704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_124142700_124144500
ENSMUSG00000066306.14_0	chr7	+	7078	25	NIC	ENSMUSG00000066306.14	novel	2862	14	NA	NA	11	2	combination_of_known_junctions	FALSE	canonical	3	160	junction_1	65.3807226091062	182	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCTAAGCTCTTTGGGT	2104	False	NA	30	True	AATAAA	-18	NA	101583328	101664164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101583383_101626586_101626658_101636932_101637019_101639779_101639860_101640852_101640936_101641844_101641926_101642431_101642520_101643869_101643988_101644603_101644762_101645024_101645143_101645229_101645348_101645641_101645783_101647281_101647405_101647506_101650867_101656692_101656762_101658297_101658418_101658500_101658720_101658823_101658982_101660039_101660287_101661087_101661317_101661948_101662086_101662375_101662553_101662736_101662854_101662944_101663149_101663442
ENSMUSG00000066306.14_40	chr7	+	7026	24	ISM	ENSMUSG00000066306.14	ENSMUST00000084852.13	7180	25	7557	7	6639	2	3prime_fragment	FALSE	canonical	3	241	junction_7	57.6465667153238	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCTAAGCTCTTTGGGT	NA	False	NA	30	True	AATAAA	-18	NA	101626584	101664164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101626658_101636932_101637019_101639779_101639860_101640852_101640936_101641844_101641926_101642431_101642520_101643869_101643988_101644603_101644762_101645024_101645143_101645229_101645348_101645641_101645783_101647281_101647405_101647506_101650867_101656692_101656762_101658297_101658418_101658500_101658720_101658823_101658982_101660039_101660287_101661087_101661317_101661948_101662086_101662375_101662553_101662736_101662854_101662944_101663149_101663442
ENSMUSG00000066306.14_5	chr7	+	7185	25	NIC	ENSMUSG00000066306.14	novel	2862	14	NA	NA	18	1	combination_of_known_junctions	FALSE	canonical	3	126	junction_1	69.0609131290792	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGCTAAGCTCTTTGGG	2138	False	NA	29	True	AATAAA	-17	NA	101583362	101664163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101583525_101626586_101626658_101636932_101637019_101639779_101639860_101640852_101640936_101641844_101641926_101642431_101642520_101643869_101643988_101644603_101644762_101645024_101645143_101645229_101645348_101645641_101645783_101647281_101647405_101647506_101650867_101656692_101656762_101658297_101658418_101658500_101658720_101658823_101658982_101660039_101660287_101661087_101661317_101661948_101662086_101662375_101662553_101662736_101662854_101662944_101663149_101663442
ENSMUSG00000066306.14_58	chr7	+	4024	12	ISM	ENSMUSG00000066306.14	ENSMUST00000084852.13	7180	25	30213	8	-1131	1	3prime_fragment	FALSE	canonical	3	317	junction_2	41.2496932119821	187	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGCTAAGCTCTTTGGG	NA	False	NA	29	True	AATAAA	-17	NA	101649240	101664163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101650867_101656692_101656762_101658297_101658418_101658500_101658720_101658823_101658982_101660039_101660287_101661087_101661317_101661948_101662086_101662375_101662553_101662736_101662854_101662944_101663149_101663442
ENSMUSG00000066315.10_0	chr4	+	686	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	-19	-31	-19	31	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAGCAAAAAAAAAAAAA	1	True	NA	NA	False	AATAAA	-7	NA	10848400	10849086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_10848400_10849100
ENSMUSG00000066324.3_0	chr4	-	6515	5	FSM	ENSMUSG00000066324.3	ENSMUST00000084949.3	6543	5	18	10	18	-10	multi-exon	FALSE	canonical	3	157	junction_3	6.90561365846657	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGGTTCCTATGCTGT	-9	True	NA	-14	True	AATAAA	-12	NA	4793337	4762493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_4767973_4769311_4769474_4776313_4776410_4778192_4778356_4792722
ENSMUSG00000066324.3_1	chr4	-	3436	1	ISM	ENSMUSG00000066324.3	ENSMUST00000084949.3	6543	5	27428	8	27428	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGTTCCTATGCTGTGT	NA	False	NA	-12	True	AATAAA	-14	NA	4765927	4762491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_4762500_4765900
ENSMUSG00000066357.7_0	chr9	-	4056	6	FSM	ENSMUSG00000066357.7	ENSMUST00000068700.7	4163	6	100	7	100	-7	multi-exon	FALSE	canonical	3	171	junction_5	13.1969693490589	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTCTTCTGTGCCTTAC	5851	False	NA	-8	True	AATAAA	-13	NA	108455838	108449516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108450613_108450687_108450807_108450892_108451010_108451103_108451200_108451299_108453782_108455692
ENSMUSG00000066357.7_1	chr9	-	2793	5	ISM	ENSMUSG00000066357.7	ENSMUST00000068700.7	4163	6	3274	7	3274	-7	3prime_fragment	FALSE	canonical	3	172	junction_2	13.8293166859393	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTCTTCTGTGCCTTAC	9025	False	NA	-8	True	AATAAA	-13	NA	108452664	108449516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_108450613_108450687_108450807_108450892_108451010_108451103_108451200_108451299
ENSMUSG00000066362.6_0	chr8	+	520	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	5	13	5	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	1955	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATC	NA	False	NA	24	True	AATAAA	-13	NA	87774321	87774841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_87774300_87774800
ENSMUSG00000066406.17_0	chr7	+	9134	36	NIC	ENSMUSG00000066406.17	novel	12597	38	NA	NA	5	-3338	combination_of_known_junctions	FALSE	canonical	3	9	junction_8	5.12457066394795	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGTACCAAAAACCATGG	NA	False	NA	NA	False	NA	NA	NA	75105286	75401019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_75105497_75184555_75184600_75219631_75219780_75229249_75229547_75235904_75236089_75252533_75252727_75258232_75261297_75264668_75264797_75313159_75313236_75316259_75316397_75326853_75327228_75334864_75335058_75336960_75337070_75345371_75345415_75347049_75347183_75354112_75354288_75367517_75367586_75369876_75369944_75373532_75373669_75375047_75375161_75375715_75375869_75376717_75376969_75378543_75378670_75378781_75378900_75380110_75380360_75385460_75385538_75386033_75386216_75386355_75386439_75389113_75389309_75392383_75392546_75393213_75393285_75393712_75393758_75396507_75396559_75397325_75397776_75398927_75399259_75400321
ENSMUSG00000066406.17_11	chr7	+	2114	3	ISM	ENSMUSG00000066406.17	ENSMUST00000207750.2	12597	38	292200	2547	45737	-2547	3prime_fragment	FALSE	canonical	3	25	junction_2	2	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTTTGTGTTGTGTTT	NA	False	NA	NA	False	TTTAAA	-29	NA	75397481	75401810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_75397776_75398927_75399259_75400321
ENSMUSG00000066406.17_12	chr7	+	1869	2	ISM	ENSMUSG00000066406.17	ENSMUST00000207750.2	12597	38	293854	2290	47391	-2290	3prime_fragment	FALSE	canonical	3	25	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTCTGGGGTTTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	75399135	75402067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_75399259_75400321
ENSMUSG00000066406.17_13	chr7	+	3062	1	ISM	ENSMUSG00000066406.17	ENSMUST00000207750.2	12597	38	296013	1	49550	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTGCCGTGATGTATTT	NA	False	NA	2	True	AATAAA	-17	NA	75401294	75404356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_75401300_75404400
ENSMUSG00000066406.17_14	chr7	+	4763	8	ISM	ENSMUSG00000066406.17	ENSMUST00000207750.2	12597	38	1	139070	1	2245	5prime_fragment	FALSE	canonical	3	11	junction_4	3.52252228741084	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCATGCATCCACCACTGC	NA	False	NA	NA	False	AATAAA	-19	NA	75105282	75265287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_75105497_75184555_75184600_75219631_75219780_75229249_75229547_75235904_75236089_75252533_75252727_75258232_75261297_75264668
ENSMUSG00000066406.17_5	chr7	+	5684	12	ISM	ENSMUSG00000066406.17	ENSMUST00000207750.2	12597	38	274871	206	28408	-206	3prime_fragment	FALSE	canonical	3	19	junction_1	4.2698249330245	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAAGTGCTGTATAGT	NA	False	NA	NA	False	AATAAA	-11	NA	75380152	75404151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_75380360_75385460_75385538_75386033_75386216_75386355_75386439_75389113_75389309_75392383_75392546_75393213_75393285_75393712_75393758_75396507_75396559_75397325_75397776_75398927_75399259_75400321
ENSMUSG00000066407.4_0	chr13	+	308	1	FSM	ENSMUSG00000066407.4	ENSMUST00000085163.4	300	1	-13	5	-13	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATTAAAAAAAAAAGTTTC	NA	False	NA	NA	False	AATAAA	-7	NA	73465949	73466257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_73465900_73466300
ENSMUSG00000066415.5_0	chr9	+	4430	2	FSM	ENSMUSG00000066415.5	ENSMUST00000085177.5	4889	2	-460	919	201	-919	multi-exon	FALSE	canonical	3	56	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCTTCTTAGTTGTCT	NA	False	NA	7	True	AGTAAA	-7	NA	100956354	100981080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_100957474_100977769
ENSMUSG00000066415.5_11	chr9	+	4746	3	FSM	ENSMUSG00000066415.5	ENSMUST00000189616.2	2612	3	-29	-2105	-29	-910	multi-exon	FALSE	canonical	2	3	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGTTGTCTTGTCTTTAT	NA	False	NA	16	True	AGTAAA	-16	NA	100956124	100981089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_100957474_100957932_100958010_100977769
ENSMUSG00000066415.5_13	chr9	+	4474	3	NNC	ENSMUSG00000066415.5	novel	4889	2	NA	NA	-25	-919	at_least_one_novel_splicesite	FALSE	non_canonical	1	8	junction_1	24	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCTTCTTAGTTGTCT	NA	False	NA	7	True	AGTAAA	-7	NA	100956128	100981080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_100956374_100956555_100957474_100977769
ENSMUSG00000066415.5_2	chr9	+	4495	3	NNC	ENSMUSG00000066415.5	novel	4889	2	NA	NA	-43	-913	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	28	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTAGTTGTCTTGTCTT	NA	False	NA	13	True	AGTAAA	-13	NA	100956110	100981086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_100956372_100956556_100957474_100977769
ENSMUSG00000066415.5_25	chr9	+	2380	1	ISM	ENSMUSG00000066415.5	ENSMUST00000085177.5	4889	2	22395	410	22395	-410	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTCTATGTTGTAGAATA	NA	False	NA	12	True	AATAAA	-12	NA	100979209	100981589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_100979200_100981600
ENSMUSG00000066415.5_3	chr9	+	4491	3	NNC	ENSMUSG00000066415.5	novel	4889	2	NA	NA	-39	-912	at_least_one_novel_splicesite	FALSE	non_canonical	1	5	junction_1	25.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTAGTTGTCTTGTCTTT	NA	False	NA	14	True	AGTAAA	-14	NA	100956114	100981087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_100956372_100956557_100957474_100977769
ENSMUSG00000066438.7_0	chr12	+	3496	13	FSM	ENSMUSG00000066438.7	ENSMUST00000140770.2	3535	13	30	9	30	-9	multi-exon	FALSE	canonical	0	0	junction_2	3.32812092461931	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAACTAGATTACTGGTT	NA	False	NA	-5	True	AATGAA	-6	NA	80739394	80770979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80739802_80752317_80752412_80752778_80752869_80753126_80753204_80753945_80754038_80754955_80755009_80763994_80764090_80765686_80765781_80767357_80767537_80767986_80768120_80768222_80768368_80768719_80768870_80769092
ENSMUSG00000066438.7_2	chr12	+	2249	2	FSM	ENSMUSG00000066438.7	ENSMUST00000153762.2	956	2	4	-1297	4	-7	multi-exon	FALSE	canonical	3	14	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTAGATTACTGGTTTC	NA	False	NA	-3	True	AATGAA	-8	NA	80768509	80770981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80768870_80769092
ENSMUSG00000066438.7_3	chr12	+	1154	1	ISM	ENSMUSG00000066438.7	ENSMUST00000140770.2	3535	13	30438	32	1297	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGGACTTTGAAATGAAGA	NA	False	NA	-28	True	TATAAA	-42	NA	80769802	80770956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_80769800_80771000
ENSMUSG00000066440.6_0	chr12	-	3820	15	ISM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	38824	2	542	0	3prime_fragment	FALSE	canonical	3	33	junction_11	9.1464836557721	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTCTTAGCTTCATCAGC	NA	False	NA	-7	True	AATAAA	-15	NA	79304254	79279121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79280944_79283387_79283433_79283946_79284130_79285095_79285156_79285677_79285820_79286630_79286831_79287669_79287868_79291045_79291265_79292808_79293019_79293244_79293393_79296236_79296458_79297927_79298065_79298922_79298955_79302003_79302141_79304188
ENSMUSG00000066440.6_1	chr12	-	9362	42	FSM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	27	2	1	0	multi-exon	TRUE	canonical	3	23	junction_36	10.4802014412253	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTCTTAGCTTCATCAGC	NA	False	NA	-7	True	AATAAA	-15	NA	79343051	79279121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_79280944_79283387_79283433_79283946_79284130_79285095_79285156_79285677_79285820_79286630_79286831_79287669_79287868_79291045_79291265_79292808_79293019_79293244_79293393_79296236_79296458_79297927_79298065_79298922_79298955_79302003_79302141_79304188_79304353_79307574_79307674_79308351_79308599_79310546_79310724_79311084_79311208_79312461_79312567_79313131_79313329_79315132_79315876_79317611_79317715_79318840_79319060_79320066_79320232_79320330_79320451_79321625_79321890_79323016_79323219_79325181_79325334_79325863_79325933_79326816_79326904_79327130_79327740_79329575_79329777_79330809_79330974_79332032_79332122_79332255_79332421_79332979_79333102_79334148_79334654_79337647_79337738_79340599_79340679_79342250_79342547_79342999
ENSMUSG00000066440.6_10	chr12	-	4620	20	ISM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	30562	1	2617	-1	3prime_fragment	FALSE	canonical	3	28	junction_15	9.35777040945177	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTTAGCTTCATCAGCT	NA	False	NA	-6	True	AATAAA	-16	NA	79312516	79279120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79280944_79283387_79283433_79283946_79284130_79285095_79285156_79285677_79285820_79286630_79286831_79287669_79287868_79291045_79291265_79292808_79293019_79293244_79293393_79296236_79296458_79297927_79298065_79298922_79298955_79302003_79302141_79304188_79304353_79307574_79307674_79308351_79308599_79310546_79310724_79311084_79311208_79312461
ENSMUSG00000066440.6_16	chr12	-	4158	17	ISM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	34586	2	-127	0	3prime_fragment	FALSE	canonical	3	28	junction_15	10.054344521151	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTCTTAGCTTCATCAGC	NA	False	NA	-7	True	AATAAA	-15	NA	79308492	79279121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79280944_79283387_79283433_79283946_79284130_79285095_79285156_79285677_79285820_79286630_79286831_79287669_79287868_79291045_79291265_79292808_79293019_79293244_79293393_79296236_79296458_79297927_79298065_79298922_79298955_79302003_79302141_79304188_79304353_79307574_79307674_79308351
ENSMUSG00000066440.6_19	chr12	-	2385	6	ISM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	56316	1	334	-1	3prime_fragment	FALSE	canonical	3	41	junction_3	9.2217135067188	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTTAGCTTCATCAGCT	9526	False	NA	-6	True	AATAAA	-16	NA	79286762	79279120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79280944_79283387_79283433_79283946_79284130_79285095_79285156_79285677_79285820_79286630
ENSMUSG00000066440.6_2	chr12	-	3030	9	ISM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	50110	1	-1783	-1	3prime_fragment	FALSE	canonical	3	36	junction_8	10.5170991723003	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTTAGCTTCATCAGCT	3320	False	NA	-6	True	AATAAA	-16	NA	79292968	79279120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79280944_79283387_79283433_79283946_79284130_79285095_79285156_79285677_79285820_79286630_79286831_79287669_79287868_79291045_79291265_79292808
ENSMUSG00000066440.6_21	chr12	-	3200	10	ISM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	49710	5	-2183	-3	3prime_fragment	FALSE	canonical	3	36	junction_8	9.92191737742481	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTACGTCTTAGCTTCATC	2920	False	NA	-10	True	AATAAA	-12	NA	79293368	79279124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79280944_79283387_79283433_79283946_79284130_79285095_79285156_79285677_79285820_79286630_79286831_79287669_79287868_79291045_79291265_79292808_79293019_79293244
ENSMUSG00000066440.6_27	chr12	-	2203	3	FSM	ENSMUSG00000066440.6	ENSMUST00000219571.2	824	3	-3	-1376	1	-7	multi-exon	FALSE	canonical	3	37	junction_2	9.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79343055	79338827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_79340679_79342250_79342547_79342999
ENSMUSG00000066440.6_5	chr12	-	5173	22	ISM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	27636	5	-255	-3	3prime_fragment	FALSE	canonical	3	28	junction_15	9.13342767715313	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTACGTCTTAGCTTCATC	NA	False	NA	-10	True	AATAAA	-12	NA	79315442	79279124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79280944_79283387_79283433_79283946_79284130_79285095_79285156_79285677_79285820_79286630_79286831_79287669_79287868_79291045_79291265_79292808_79293019_79293244_79293393_79296236_79296458_79297927_79298065_79298922_79298955_79302003_79302141_79304188_79304353_79307574_79307674_79308351_79308599_79310546_79310724_79311084_79311208_79312461_79312567_79313131_79313329_79315132
ENSMUSG00000066440.6_8	chr12	-	2182	5	ISM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	57326	5	1344	-3	3prime_fragment	FALSE	canonical	3	41	junction_3	9.82344135219425	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTACGTCTTAGCTTCATC	NA	False	NA	-10	True	AATAAA	-12	NA	79285752	79279124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79280944_79283387_79283433_79283946_79284130_79285095_79285156_79285677
ENSMUSG00000066440.6_9	chr12	-	1223	1	ISM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	62735	1	3104	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTTAGCTTCATCAGCT	NA	False	NA	-6	True	AATAAA	-16	NA	79280343	79279120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79279100_79280300
ENSMUSG00000066441.15_0	chr12	-	2817	7	FSM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	440	5	-60	-5	multi-exon	FALSE	canonical	3	91	junction_5	13.7113092008021	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTTTATGGGGATA	NA	False	NA	-23	True	AATAAA	-35	NA	79238627	79221115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79238499
ENSMUSG00000066441.15_2	chr12	-	1602	1	ISM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	16350	5	15018	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTTTATGGGGATA	NA	False	NA	-23	True	AATAAA	-35	NA	79222717	79221115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79221100_79222700
ENSMUSG00000066441.15_4	chr12	-	2187	3	ISM	ENSMUSG00000066441.15	ENSMUST00000085254.7	1673	7	5750	-1209	5750	-5	3prime_fragment	FALSE	canonical	3	114	junction_2	10.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTTTATGGGGATA	NA	False	NA	-23	True	AATAAA	-35	NA	79231985	79221115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_79223025_79229426_79229617_79231897
ENSMUSG00000066442.18_0	chr9	+	753	3	FSM	ENSMUSG00000066442.18	ENSMUST00000085256.8	816	3	20	43	20	6	multi-exon	TRUE	canonical	3	175	junction_1	109	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAATAATATAAAA	NA	False	NA	NA	False	ATTAAA	-28	NA	89093229	89122250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_89093365_89097261_89097524_89121894
ENSMUSG00000066442.18_4	chr9	+	693	3	NIC	ENSMUSG00000066442.18	novel	1406	4	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	83	junction_1	155	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGTATAAAAATAAAATAAT	NA	False	NA	NA	False	ATTAAA	-22	NA	89093453	89122244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_89093535_89097261_89097524_89121894
ENSMUSG00000066442.18_5	chr9	+	4399	2	FSM	ENSMUSG00000066442.18	ENSMUST00000127868.2	655	2	-3495	-249	40	-6	multi-exon	FALSE	canonical	3	393	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATTTAGAAATCAATAGAAA	NA	False	NA	NA	False	AATAAA	-15	NA	89093503	89122273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_89097524_89121894
ENSMUSG00000066442.18_8	chr9	+	2886	3	ISM	ENSMUSG00000066442.18	ENSMUST00000117314.8	705	4	855	-106	827	-5	3prime_fragment	FALSE	canonical	3	44	junction_1	174.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	89094290	89122274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_89096535_89097261_89097524_89121894
ENSMUSG00000066442.18_9	chr9	+	288	1	ISM	ENSMUSG00000066442.18	ENSMUST00000085256.8	816	3	28751	45	21454	4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAATAAAATAATATAA	NA	False	NA	NA	False	ATTAAA	-26	NA	89121960	89122248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_89122000_89122200
ENSMUSG00000066443.6_0	chr9	+	548	1	FSM	ENSMUSG00000066443.6	ENSMUST00000155008.2	481	1	-33	-34	-33	34	mono-exon	FALSE	NA	NA	NA	NA	NA	746	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88272856	88273404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_88272900_88273400
ENSMUSG00000066456.15_0	chr9	-	823	6	FSM	ENSMUSG00000066456.15	ENSMUST00000161796.9	862	6	39	0	-36	0	multi-exon	FALSE	canonical	3	36	junction_1	6.24179461373089	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028619	82992000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_82992483_82993086_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
ENSMUSG00000066456.15_3	chr9	-	1436	5	FSM	ENSMUSG00000066456.15	ENSMUST00000185315.7	1391	5	-46	1	29	-1	multi-exon	FALSE	canonical	3	40	junction_3	4.7169905660283	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATATCCACCTGTTTGT	NA	False	NA	-7	True	AATAAA	-17	NA	83028629	82992001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
ENSMUSG00000066487.4_0	chr12	+	133	1	FSM	ENSMUSG00000066487.4	ENSMUST00000085368.4	882	1	789	-40	789	40	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	AATAAA	-17	NA	59128593	59128726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_59128600_59128700
ENSMUSG00000066500.6_0	chr7	+	632	7	NIC	ENSMUSG00000066500.6	novel	704	7	NA	NA	83	2	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	1.70782512765993	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTCTTTAATGTCTGTA	271	False	NA	NA	False	AATAAA	-17	NA	44358248	44369260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44358399_44358479_44358555_44359678_44359766_44359934_44359956_44362421_44362503_44364751_44364876_44369166
ENSMUSG00000066500.6_1	chr7	+	800	6	FSM	ENSMUSG00000066500.6	ENSMUST00000207182.2	490	6	-315	5	-2	4	multi-exon	FALSE	canonical	1	3	junction_3	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTTAATGTCTGTACA	186	False	NA	NA	False	AATAAA	-19	NA	44358163	44369262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44358555_44359678_44359766_44359934_44359956_44362421_44362503_44364751_44364876_44369166
ENSMUSG00000066543.9_0	chr7	+	620	1	FSM	ENSMUSG00000066543.9	ENSMUST00000119541.2	555	1	-35	-30	-35	30	mono-exon	FALSE	NA	NA	NA	NA	NA	246	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	35817663	35818283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_35817700_35818300
ENSMUSG00000066551.13_0	chr5	-	1305	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	6	1527	6	-1	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	5089	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTGTTGTCCTTTTCAT	6770	False	NA	NA	False	AGTAAA	-17	NA	148989844	148985038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
ENSMUSG00000066568.13_0	chr7	-	2818	11	FSM	ENSMUSG00000066568.13	ENSMUST00000085585.12	2944	11	50	76	50	-59	multi-exon	FALSE	canonical	3	572	junction_4	54.3963234051714	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACTATAGTGAAAAAGATC	NA	False	NA	-19	True	AATAAA	-16	NA	34089062	34044146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_34045384_34047350_34047408_34050710_34050943_34052814_34052987_34053089_34053273_34056858_34056922_34057190_34057368_34065039_34065163_34070479_34070610_34074653_34074818_34088782
ENSMUSG00000066568.13_6	chr7	-	2765	10	NIC	ENSMUSG00000066568.13	novel	2944	11	NA	NA	51	-54	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	198.720599191956	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGTGAAAAAGATCTGGCC	NA	False	NA	-14	True	AATAAA	-21	NA	34089061	34044141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_34045384_34050710_34050943_34052814_34052987_34053089_34053273_34056858_34056922_34057190_34057368_34065039_34065163_34070479_34070610_34074653_34074818_34088782
ENSMUSG00000066571.14_0	chr7	-	6154	13	FSM	ENSMUSG00000066571.14	ENSMUST00000085592.6	5798	13	-356	0	-356	0	multi-exon	FALSE	canonical	3	102	junction_10	17.4664360671801	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATACTCTGTATCTTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	33985380	33936138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_33938663_33939168_33939248_33939933_33940072_33941664_33941831_33944390_33945404_33947531_33947658_33953411_33953510_33955836_33955996_33956771_33956934_33957056_33957153_33957437_33957579_33962977_33963176_33984126
ENSMUSG00000066571.14_1	chr7	-	6193	14	FSM	ENSMUSG00000066571.14	ENSMUST00000108074.8	6224	14	24	7	-5	0	multi-exon	FALSE	canonical	3	49	junction_13	29.0706138861218	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATACTCTGTATCTTTT	9832	False	NA	NA	False	ATTAAA	-11	NA	34012952	33936138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_33938663_33939168_33939248_33939933_33940072_33941664_33941831_33944390_33945404_33947531_33947658_33953411_33953510_33955836_33955996_33956771_33956934_33957056_33957153_33957437_33957579_33962977_33963176_33984126_33985379_34012911
ENSMUSG00000066571.14_2	chr7	-	6193	14	NIC	ENSMUSG00000066571.14	novel	6224	14	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	60	junction_13	26.7307415605834	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATACTCTGTATCTTTT	9827	False	NA	NA	False	ATTAAA	-11	NA	34012957	33936138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_33938663_33939168_33939248_33939933_33940072_33941664_33941831_33944390_33945404_33947531_33947658_33953411_33953510_33955836_33955996_33956771_33956934_33957056_33957153_33957437_33957579_33962977_33963176_33984126_33985379_34012916
ENSMUSG00000066571.14_3	chr7	-	2851	4	ISM	ENSMUSG00000066571.14	ENSMUST00000085592.6	5798	13	43250	0	2767	0	3prime_fragment	FALSE	canonical	3	151	junction_3	1.69967317119759	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATACTCTGTATCTTTT	3314	False	NA	NA	False	ATTAAA	-11	NA	33941774	33936138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_33938663_33939168_33939248_33939933_33940072_33941664
ENSMUSG00000066571.14_4	chr7	-	1770	1	ISM	ENSMUSG00000066571.14	ENSMUST00000108074.8	6224	14	75068	7	6633	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATACTCTGTATCTTTT	7180	False	NA	NA	False	ATTAAA	-11	NA	33937908	33936138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_33936100_33937900
ENSMUSG00000066571.14_9	chr7	-	3520	5	ISM	ENSMUSG00000066571.14	ENSMUST00000085592.6	5798	13	40021	0	-273	0	3prime_fragment	FALSE	canonical	3	117	junction_4	15.8015030930605	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATACTCTGTATCTTTT	85	False	NA	NA	False	ATTAAA	-11	NA	33945003	33936138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_33938663_33939168_33939248_33939933_33940072_33941664_33941831_33944390
ENSMUSG00000066595.10_0	chr1	-	3972	9	NIC	ENSMUSG00000066595.10	novel	4040	10	NA	NA	-28	15	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	8.71421252896669	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACAAATCCTGGTGTCT	NA	False	NA	16	True	AATAAA	-35	NA	190758383	190738028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190744335_190744440_190745560_190745629_190747554_190747696_190753272_190753454_190757573
ENSMUSG00000066595.10_1	chr1	-	4065	10	FSM	ENSMUSG00000066595.10	ENSMUST00000085635.6	4040	10	-28	3	-28	0	multi-exon	FALSE	canonical	2	14	junction_1	7.45521608765167	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTATATGTCCTTTAA	NA	False	NA	-2	True	AATAAA	-17	NA	190758383	190738046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190743732_190743844_190744335_190744440_190745560_190745629_190747554_190747696_190753272_190753454_190757573
ENSMUSG00000066595.10_10	chr1	-	1266	1	FSM	ENSMUSG00000066595.10	ENSMUST00000191946.2	1216	1	-62	12	-28	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGGCAGTATTACTGAG	NA	False	NA	NA	False	AATAAA	-16	NA	190758383	190757117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_190757100_190758400
ENSMUSG00000066595.10_2	chr1	-	3757	9	FSM	ENSMUSG00000066595.10	ENSMUST00000192666.2	3666	9	-92	1	65	0	multi-exon	FALSE	canonical	2	3	junction_8	11.3571288184999	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTATATGTCCTTTAA	NA	False	NA	-2	True	AATAAA	-17	NA	190758256	190738046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190743732_190743844_190744335_190744440_190745560_190745629_190747554_190747696_190757573
ENSMUSG00000066595.10_3	chr1	-	4192	11	NNC	ENSMUSG00000066595.10	novel	4040	10	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	11.1427106217473	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTATATGTCCTTTAA	NA	False	NA	-2	True	AATAAA	-17	NA	190758383	190738046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190743732_190743844_190744335_190744440_190745560_190745629_190747554_190747696_190752632_190752760_190753272_190753454_190757573
ENSMUSG00000066595.10_4	chr1	-	2383	2	FSM	ENSMUSG00000066595.10	ENSMUST00000194589.2	2449	2	67	-1	67	0	multi-exon	FALSE	canonical	2	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTATATGTCCTTTAAA	NA	False	NA	-1	True	AATAAA	-18	NA	190740585	190738045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_190740408_190740564
ENSMUSG00000066595.10_9	chr1	-	1543	1	ISM	ENSMUSG00000066595.10	ENSMUST00000194917.6	3029	5	4519	3	1063	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTATATGTCCTTTAA	NA	False	NA	-2	True	AATAAA	-17	NA	190739589	190738046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_190738000_190739600
ENSMUSG00000066607.6_0	chr9	+	2683	3	FSM	ENSMUSG00000066607.6	ENSMUST00000085658.5	2139	3	-509	-35	-509	-3	multi-exon	FALSE	canonical	0	0	junction_2	8.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGATCCGGGGCCCACAG	NA	False	NA	NA	False	AATAAA	-14	NA	58395376	58407060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_58396523_58396951_58397676_58406247
ENSMUSG00000066607.6_1	chr9	+	1952	2	FSM	ENSMUSG00000066607.6	ENSMUST00000217624.2	1095	2	-869	12	-510	-12	multi-exon	FALSE	canonical	3	17	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGTGTGCAATGCTAT	NA	False	NA	NA	False	AGTAAA	-14	NA	58395375	58397756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_58396523_58396951
ENSMUSG00000066613.15_1	chr5	+	3745	4	FSM	ENSMUSG00000066613.15	ENSMUST00000112540.8	2081	4	-1	-1663	-1	1663	multi-exon	FALSE	canonical	3	131	junction_3	47.4856703531591	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGAGTGTGCTCAGCAAT	8369	False	NA	NA	False	ATTAAA	-18	NA	110144385	110159940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110144500_110154809_110154937_110155121_110155183_110156497
ENSMUSG00000066613.15_11	chr5	+	3963	2	ISM	ENSMUSG00000066613.15	ENSMUST00000112536.8	2509	3	-2166	2027	-2166	-726	5prime_fragment	FALSE	canonical	3	245	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110152095	110156243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110154937_110155121
ENSMUSG00000066613.15_12	chr5	+	4343	3	FSM	ENSMUSG00000066613.15	ENSMUST00000112536.8	2509	3	-1831	-3	-1831	3	multi-exon	FALSE	canonical	3	131	junction_2	57	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCCTTGGTCATGGTAT	NA	False	NA	18	True	NA	NA	NA	110152430	110158273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110154937_110155121_110155183_110156497
ENSMUSG00000066613.15_13	chr5	+	829	1	ISM	ENSMUSG00000066613.15	ENSMUST00000112540.8	2081	4	13060	2	2965	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTGGTCATGGTATCT	NA	False	NA	20	True	NA	NA	NA	110157446	110158275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_110157400_110158300
ENSMUSG00000066613.15_2	chr5	+	452	3	FSM	ENSMUSG00000066613.15	ENSMUST00000099484.9	451	3	1	-2	1	2	multi-exon	FALSE	canonical	3	208	junction_1	18.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCAGGTGTCTGATTTG	8372	False	NA	NA	False	NA	NA	NA	110144388	110155335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110144500_110154809_110154937_110155121
ENSMUSG00000066613.15_4	chr5	+	3846	5	FSM	ENSMUSG00000066613.15	ENSMUST00000125213.8	868	5	-11	-2967	0	1665	multi-exon	FALSE	canonical	3	13	junction_2	94.3514043350707	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTGTGCTCAGCAATTA	8370	False	NA	NA	False	ATTAAA	-20	NA	110144386	110159942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110144500_110151218_110151319_110154809_110154937_110155121_110155183_110156497
ENSMUSG00000066621.13_0	chr5	-	5058	25	FSM	ENSMUSG00000066621.13	ENSMUST00000085701.7	5106	25	42	6	-15	-6	multi-exon	FALSE	canonical	3	63	junction_17	9.68236871271121	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCGTGACTGACAAGATT	NA	False	NA	-12	True	AATAAA	-11	NA	144160391	144131265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_144132836_144132949_144133070_144133169_144133277_144134709_144134803_144135372_144135509_144135946_144136128_144136547_144136605_144137632_144137713_144137829_144137927_144140225_144140329_144141442_144141571_144142982_144143141_144143234_144143385_144144211_144144368_144145412_144145559_144146677_144147184_144148222_144148369_144149390_144149493_144150873_144150975_144151062_144151238_144153070_144153197_144153720_144153844_144154043_144154227_144155331_144155567_144160312
ENSMUSG00000066621.13_1	chr5	-	4244	20	ISM	ENSMUSG00000066621.13	ENSMUST00000085701.7	5106	25	9266	4	1310	-4	3prime_fragment	FALSE	canonical	3	63	junction_17	9.56071138650605	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGTGACTGACAAGATTTT	NA	False	NA	-10	True	AATAAA	-13	NA	144151167	144131263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_144132836_144132949_144133070_144133169_144133277_144134709_144134803_144135372_144135509_144135946_144136128_144136547_144136605_144137632_144137713_144137829_144137927_144140225_144140329_144141442_144141571_144142982_144143141_144143234_144143385_144144211_144144368_144145412_144145559_144146677_144147184_144148222_144148369_144149390_144149493_144150873_144150975_144151062
ENSMUSG00000066621.13_11	chr5	-	3375	16	ISM	ENSMUSG00000066621.13	ENSMUST00000085701.7	5106	25	13647	22	-1329	-22	3prime_fragment	FALSE	canonical	3	64	junction_11	8.96809158442679	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAATTTATACCACAG	NA	False	NA	-28	True	NA	NA	NA	144146786	144131281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_144132836_144132949_144133070_144133169_144133277_144134709_144134803_144135372_144135509_144135946_144136128_144136547_144136605_144137632_144137713_144137829_144137927_144140225_144140329_144141442_144141571_144142982_144143141_144143234_144143385_144144211_144144368_144145412_144145559_144146677
ENSMUSG00000066629.3_0	chr12	+	368	1	FSM	ENSMUSG00000066629.3	ENSMUST00000085720.3	315	1	-18	-35	-18	35	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAACTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	12962004	12962372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_12962000_12962400
ENSMUSG00000066632.4_0	chr12	-	1742	1	FSM	ENSMUSG00000066632.4	ENSMUST00000085735.4	1255	1	-73	-414	-73	414	mono-exon	FALSE	NA	NA	NA	NA	NA	1818	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATGAAAAAAAAAAAATC	NA	False	NA	NA	False	AATAAA	-11	NA	10950313	10948571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_10948600_10950300
ENSMUSG00000066637.3_0	chr12	+	781	3	FSM	ENSMUSG00000066637.3	ENSMUST00000085741.2	1000	3	5	214	5	-214	multi-exon	FALSE	canonical	3	121	junction_2	13	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATTTCTATTCCCAACT	NA	False	NA	14	True	AGTAAA	-16	NA	9080001	9086180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_9080197_9084921_9085089_9085761
ENSMUSG00000066640.12_0	chr5	-	1314	1	ISM	ENSMUSG00000066640.12	ENSMUST00000110766.8	7857	5	27155	7	4227	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCAGGCAGCCGTGTGG	NA	False	NA	-8	True	AATAAA	-16	NA	142854021	142852707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_142852700_142854000
ENSMUSG00000066640.12_1	chr5	-	2795	5	FSM	ENSMUSG00000066640.12	ENSMUST00000035985.8	2831	5	31	5	31	-5	multi-exon	FALSE	canonical	3	17	junction_3	6.28490254498827	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCATTGATGTCTCCAGG	NA	False	NA	-7	True	NA	NA	NA	142880962	142857548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_142858276_142864412_142864632_142871293_142872838_142874423_142874631_142880864
ENSMUSG00000066640.12_2	chr5	-	4377	4	NIC	ENSMUSG00000066640.12	novel	2831	5	NA	NA	40	0	intron_retention	FALSE	canonical	3	21	junction_1	5.55777733351102	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTCTCCAGGATGTT	NA	False	NA	-2	True	NA	NA	NA	142880953	142857543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_142858276_142864412_142864632_142871293_142874631_142880864
ENSMUSG00000066640.12_7	chr5	-	1503	3	ISM	ENSMUSG00000066640.12	ENSMUST00000035985.8	2831	5	9146	2	9146	-2	3prime_fragment	FALSE	canonical	3	21	junction_1	6.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGATGTCTCCAGGATG	NA	False	NA	-4	True	NA	NA	NA	142871847	142857545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_142858276_142864412_142864632_142871293
ENSMUSG00000066643.13_0	chr12	+	4316	27	FSM	ENSMUSG00000066643.13	ENSMUST00000111113.3	4312	27	-10	6	-10	-6	multi-exon	FALSE	canonical	3	49	junction_5	11.1856972283898	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGATTTTGAGTAATGC	NA	False	NA	1	True	AATAAA	-8	NA	9024036	9078840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_9024180_9024933_9025052_9027362_9027435_9028597_9028691_9031031_9031161_9032760_9032895_9035628_9035795_9035966_9036113_9037277_9037404_9039904_9040091_9046068_9046130_9053996_9054142_9055762_9055833_9056719_9056774_9058001_9058112_9058478_9058690_9062660_9062742_9065969_9066107_9066436_9066641_9068085_9068233_9069877_9070011_9071729_9071841_9072718_9072884_9074193_9074335_9074885_9075043_9077482_9077724_9078005
ENSMUSG00000066647.9_3	chr7	+	4849	3	FSM	ENSMUSG00000066647.9	ENSMUST00000209028.2	5117	3	261	7	261	-7	multi-exon	FALSE	canonical	3	26	junction_2	2	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGATCCGGTTTCTCAC	9450	False	NA	NA	False	NA	NA	NA	29869560	29881742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29869640_29875275_29875372_29877068
ENSMUSG00000066647.9_7	chr7	+	3889	1	ISM	ENSMUSG00000066647.9	ENSMUST00000209028.2	5117	3	8554	7	4999	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGATCCGGTTTCTCAC	NA	False	NA	NA	False	NA	NA	NA	29877853	29881742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_29877900_29881700
ENSMUSG00000066652.6_1	chr1	+	2463	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	2	8	2	-8	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	2487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGAAAGGGAGAGAGCGA	NA	False	NA	13	True	AATAAA	-11	NA	180720674	180726660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
ENSMUSG00000066652.6_20	chr1	+	1297	1	ISM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	4691	8	3341	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGAAAGGGAGAGAGCGA	NA	False	NA	13	True	AATAAA	-11	NA	180725363	180726660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_180725400_180726700
ENSMUSG00000066652.6_7	chr1	+	1925	2	FSM	ENSMUSG00000066652.6	ENSMUST00000155546.2	422	2	105	-1608	105	-8	multi-exon	FALSE	canonical	3	1148	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGAAAGGGAGAGAGCGA	NA	False	NA	13	True	AATAAA	-11	NA	180722127	180726660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180722407_180725014
ENSMUSG00000066705.8_0	chr9	+	1532	8	FSM	ENSMUSG00000066705.8	ENSMUST00000085939.8	1788	8	255	1	-2	-1	multi-exon	FALSE	canonical	3	400	junction_2	224.259325108142	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGACTCTGAGTGGCTTTT	623	False	NA	17	True	AATAAA	-21	NA	45281737	45307452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_45281787_45301285_45301346_45301931_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUSG00000066705.8_1	chr9	+	1541	8	FSM	ENSMUSG00000066705.8	ENSMUST00000217381.2	1789	8	243	5	-14	-1	multi-exon	FALSE	canonical	3	728	junction_2	116.890320124361	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGACTCTGAGTGGCTTTT	611	False	NA	17	True	AATAAA	-21	NA	45281725	45307452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUSG00000066705.8_21	chr9	+	1375	5	ISM	ENSMUSG00000066705.8	ENSMUST00000085939.8	1788	8	20600	2	20343	-2	3prime_fragment	FALSE	canonical	3	999	junction_3	44.5105324614298	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGACTCTGAGTGGCTTT	2662	False	NA	16	True	AATAAA	-20	NA	45302082	45307451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUSG00000066705.8_29	chr9	+	768	1	ISM	ENSMUSG00000066705.8	ENSMUST00000085939.8	1788	8	25202	1	24945	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGACTCTGAGTGGCTTTT	7264	False	NA	17	True	AATAAA	-21	NA	45306684	45307452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_45306700_45307500
ENSMUSG00000066721.4_0	chr7	-	1142	4	FSM	ENSMUSG00000066721.4	ENSMUST00000094705.3	2741	4	1	1598	1	-1598	multi-exon	FALSE	canonical	2	4	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTATGTGTGGACTTCC	NA	False	NA	NA	False	AATAAA	-21	NA	24287065	24284860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24285564_24286078_24286243_24286582_24286668_24286875
ENSMUSG00000066724.4_0	chr7	-	636	1	FSM	ENSMUSG00000066724.4	ENSMUST00000086013.4	645	1	6	3	6	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAGAAAAAAAAATAAGG	NA	False	NA	NA	False	AATAAA	-10	NA	23646709	23646073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_23646100_23646700
ENSMUSG00000066735.9_1	chr5	+	3021	3	FSM	ENSMUSG00000066735.9	ENSMUST00000051758.11	3112	3	89	2	-50	-2	multi-exon	FALSE	canonical	3	775	junction_1	60.5	1049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTGTTGTGTTTTATTT	NA	False	NA	42	True	AATATA	-15	NA	129970899	130013585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129971207_130007359_130007470_130010981
ENSMUSG00000066735.9_2	chr5	+	2881	3	FSM	ENSMUSG00000066735.9	ENSMUST00000073945.6	650	3	-70	-2161	-52	-6	multi-exon	FALSE	canonical	3	55	junction_1	420.5	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGAGCCTGTTGTGTTTT	NA	False	NA	38	True	AATATA	-11	NA	129970897	130013581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129971069_130007359_130007470_130010981
ENSMUSG00000066735.9_23	chr5	+	2995	1	ISM	ENSMUSG00000066735.9	ENSMUST00000201855.2	4809	2	41585	4	6700	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATATTGTGCTGCCATCG	NA	False	NA	9	True	AATAAA	-16	NA	130012534	130015529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_130012500_130015500
ENSMUSG00000066735.9_3	chr5	+	2908	2	FSM	ENSMUSG00000066735.9	ENSMUST00000201855.2	4809	2	-48	1949	-48	-3	multi-exon	FALSE	canonical	3	56	junction_1	0	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCTGTTGTGTTTTATT	NA	False	NA	41	True	AATATA	-14	NA	129970901	130013584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129971207_130010981
ENSMUSG00000066798.4_0	chr2	-	2115	1	ISM	ENSMUSG00000066798.4	ENSMUST00000053098.6	4535	2	3296	9	3296	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGAGAACTTTGGGCTTG	NA	False	NA	-7	True	AATAAA	-12	NA	37317635	37315520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_37315500_37317600
ENSMUSG00000066798.4_1	chr2	-	4465	2	FSM	ENSMUSG00000066798.4	ENSMUST00000053098.6	4535	2	61	9	61	-6	multi-exon	FALSE	canonical	3	19	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGAGAACTTTGGGCTTG	NA	False	NA	-7	True	AATAAA	-12	NA	37320870	37315520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_37319936_37320820
ENSMUSG00000066798.4_4	chr2	-	5012	3	FSM	ENSMUSG00000066798.4	ENSMUST00000112932.2	5077	3	59	6	59	-6	multi-exon	FALSE	canonical	0	0	junction_2	9.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGAGAACTTTGGGCTTG	NA	False	NA	-7	True	AATAAA	-12	NA	37333124	37315520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_37319936_37320820_37320992_37332698
ENSMUSG00000066829.8_0	chr9	-	2362	8	NIC	ENSMUSG00000066829.8	novel	3238	8	NA	NA	-38	371	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	13.6800167084276	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCACAACTCGCTGTACA	NA	False	NA	NA	False	NA	NA	NA	22218982	22189991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_22190577_22191748_22191856_22194463_22194557_22195312_22195440_22201834_22201939_22209712_22209806_22216807_22216899_22217820
ENSMUSG00000066829.8_1	chr9	-	3287	8	FSM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	-50	1	-40	-1	multi-exon	FALSE	canonical	3	16	junction_6	8.19407451411428	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCAGTGTAAATTAAGCAT	NA	False	NA	-9	True	AATAAA	-16	NA	22218984	22188044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_22190577_22191748_22191856_22194463_22194557_22195312_22195440_22201834_22201939_22209712_22209806_22216807_22216899_22218844
ENSMUSG00000066829.8_12	chr9	-	3082	7	ISM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	2095	7	1425	-7	3prime_fragment	FALSE	canonical	3	16	junction_6	8.75119039521672	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTAGCCAGTGTAAATT	NA	False	NA	-15	True	AATAAA	-10	NA	22216839	22188050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_22190577_22191748_22191856_22194463_22194557_22195312_22195440_22201834_22201939_22209712_22209806_22216807
ENSMUSG00000066829.8_3	chr9	-	2566	2	ISM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	27160	-7	3425	7	3prime_fragment	FALSE	canonical	3	27	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTAAGCATTTTCTTTG	NA	False	NA	-1	True	AATAAA	-24	NA	22191774	22188036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_22190577_22191748
ENSMUSG00000066829.8_4	chr9	-	851	1	ISM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	30039	1	6304	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCAGTGTAAATTAAGCAT	NA	False	NA	-9	True	AATAAA	-16	NA	22188895	22188044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_22188000_22188900
ENSMUSG00000066838.8_0	chr7	-	2753	5	FSM	ENSMUSG00000066838.8	ENSMUST00000074455.9	2777	5	20	4	20	-4	multi-exon	FALSE	canonical	3	42	junction_2	7.29725975966321	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTCTTCATGACTATTG	NA	False	NA	NA	False	AATAAA	-14	NA	7212977	7205119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523_7210563_7212716
ENSMUSG00000066838.8_1	chr7	-	4916	4	ISM	ENSMUSG00000066838.8	ENSMUST00000074455.9	2777	5	12	3	12	-3	intron_retention	FALSE	canonical	3	42	junction_2	5.55777733351102	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTTCATGACTATTGT	NA	False	NA	NA	False	AATAAA	-15	NA	7212985	7205118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523
ENSMUSG00000066838.8_3	chr7	-	2843	6	NNC	ENSMUSG00000066838.8	novel	2777	5	NA	NA	21	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	23.1119016958796	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTTCATGACTATTGT	NA	False	NA	NA	False	AATAAA	-15	NA	7212976	7205118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523_7210563_7210638_7210729_7212716
ENSMUSG00000066839.13_0	chr9	-	1042	6	ISM	ENSMUSG00000066839.13	ENSMUST00000179422.8	1462	8	8983	22	8983	-22	3prime_fragment	FALSE	canonical	3	217	junction_4	15.0811140172071	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAAAATCAAAACC	4383	False	NA	-31	True	NA	NA	NA	21987715	21983563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523
ENSMUSG00000066839.13_10	chr9	-	1469	8	FSM	ENSMUSG00000066839.13	ENSMUST00000179422.8	1462	8	-15	8	10	-8	multi-exon	FALSE	canonical	3	16	junction_7	78.0418516710419	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCTCTTCCCTGGCCCT	5906	False	NA	-17	True	AATAAA	-7	NA	21996713	21983549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996644
ENSMUSG00000066839.13_2	chr9	-	1638	9	FSM	ENSMUSG00000066839.13	ENSMUST00000180180.8	1676	9	21	17	10	-17	multi-exon	FALSE	canonical	3	90	junction_8	49.2772767104677	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCAAAACCTCTTC	5906	False	NA	-26	True	NA	NA	NA	21996713	21983558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996652
ENSMUSG00000066839.13_3	chr9	-	1644	9	FSM	ENSMUSG00000066839.13	ENSMUST00000098937.10	1673	9	7	22	7	-22	multi-exon	FALSE	canonical	3	105	junction_8	44.5222907654132	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAAAATCAAAACC	5903	False	NA	-31	True	NA	NA	NA	21996716	21983563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996644
ENSMUSG00000066839.13_5	chr9	-	1447	8	NIC	ENSMUSG00000066839.13	novel	1676	9	NA	NA	10	-22	combination_of_known_splicesites	FALSE	canonical	2	10	junction_7	80.1136947196461	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAAAATCAAAACC	5906	False	NA	-31	True	NA	NA	NA	21996713	21983563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996652
ENSMUSG00000066839.13_6	chr9	-	1588	8	ISM	ENSMUSG00000066839.13	ENSMUST00000098937.10	1673	9	1223	2	1198	-2	3prime_fragment	TRUE	canonical	3	217	junction_4	14.2714214214196	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCCTGGCCCTGTGGCT	7119	False	NA	-11	True	AATAAA	-13	NA	21995500	21983543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318
ENSMUSG00000066861.15_0	chr5	-	1404	7	FSM	ENSMUSG00000066861.15	ENSMUST00000086368.12	1977	7	-8	581	-8	-1	multi-exon	FALSE	canonical	3	61	junction_5	116.597241248096	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTGTGAACTCTGAGG	NA	False	NA	NA	False	AATAAA	-18	NA	121025653	121014785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019947_121020133_121023835_121024125_121025442
ENSMUSG00000066861.15_1	chr5	-	423	3	ISM	ENSMUSG00000066861.15	ENSMUST00000161809.2	769	4	1188	-217	1188	-5	3prime_fragment	FALSE	canonical	3	316	junction_2	26.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCATGGTGTGTGAACTCT	NA	False	NA	NA	False	AATAAA	-14	NA	121016478	121014789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121015091_121015245_121015273_121016383
ENSMUSG00000066861.15_2	chr5	-	3955	6	NIC	ENSMUSG00000066861.15	novel	1489	7	NA	NA	-7	-1	intron_retention	FALSE	canonical	3	61	junction_4	120.998181804521	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTGTGAACTCTGAGG	NA	False	NA	NA	False	AATAAA	-18	NA	121025652	121014785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121020133_121023835_121024125_121025442
ENSMUSG00000066861.15_5	chr5	-	1012	4	FSM	ENSMUSG00000066861.15	ENSMUST00000161809.2	769	4	-22	-221	-22	-1	multi-exon	FALSE	canonical	3	92	junction_3	120.052766176655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTGTGAACTCTGAGG	NA	False	NA	NA	False	AATAAA	-18	NA	121017688	121014785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162
ENSMUSG00000066861.15_6	chr5	-	2160	6	ISM	ENSMUSG00000066861.15	ENSMUST00000086368.12	1977	7	554	581	554	-1	3prime_fragment	FALSE	canonical	3	61	junction_5	127.706851813049	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTGTGAACTCTGAGG	NA	False	NA	NA	False	AATAAA	-18	NA	121025091	121014785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019947_121020133_121023835
ENSMUSG00000066861.15_8	chr5	-	1444	7	FSM	ENSMUSG00000066861.15	ENSMUST00000162096.8	1489	7	44	1	13	-1	multi-exon	FALSE	canonical	3	16	junction_4	130.842674825745	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTGTGAACTCTGAGG	NA	False	NA	NA	False	AATAAA	-18	NA	121025632	121014785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019886_121020133_121023835_121024125_121025442
ENSMUSG00000066861.15_9	chr5	-	233	1	ISM	ENSMUSG00000066861.15	ENSMUST00000086368.12	1977	7	10623	585	2644	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCATGGTGTGTGAACTCT	NA	False	NA	NA	False	AATAAA	-14	NA	121015022	121014789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121014800_121015000
ENSMUSG00000066877.12_1	chr1	+	2737	5	FSM	ENSMUSG00000066877.12	ENSMUST00000086421.9	2772	5	34	1	34	-1	multi-exon	FALSE	canonical	3	156	junction_4	15.4757875405422	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCTGTGTGTTTGTGT	NA	False	NA	10	True	AATAAA	-14	NA	43484944	43609674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_43485188_43548780_43548944_43572711_43572954_43593020_43593743_43608307
ENSMUSG00000066877.12_9	chr1	+	1258	1	ISM	ENSMUSG00000066877.12	ENSMUST00000086421.9	2772	5	123506	1	35688	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCTGTGTGTTTGTGT	NA	False	NA	10	True	AATAAA	-14	NA	43608416	43609674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_43608400_43609700
ENSMUSG00000066878.6_0	chr17	-	1967	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	7	14	7	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	2025	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-20	NA	90217870	90215903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_90215900_90217900
ENSMUSG00000066880.16_0	chr8	+	3014	5	NIC	ENSMUSG00000066880.16	novel	769	4	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	26.7348087705897	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTAGTGTTCTATTGCTGT	NA	False	NA	29	True	AATAAA	-17	NA	72662494	72688473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_72662583_72666965_72667093_72682045_72682173_72682981_72683043_72685862
ENSMUSG00000066880.16_2	chr8	+	2916	4	FSM	ENSMUSG00000066880.16	ENSMUST00000119003.2	2920	4	4	0	4	0	multi-exon	FALSE	canonical	3	55	junction_3	7.78888096369861	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTAGTGTTCTATTGCTGT	NA	False	NA	29	True	AATAAA	-17	NA	72676699	72688473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72676817_72682045_72682173_72682981_72683043_72685862
ENSMUSG00000066880.16_3	chr8	+	2854	3	NIC	ENSMUSG00000066880.16	novel	2920	4	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	2	14	junction_2	30	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTAGTGTTCTATTGCTGT	NA	False	NA	29	True	AATAAA	-17	NA	72676700	72688473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_72676817_72682045_72682173_72685862
ENSMUSG00000066880.16_8	chr8	+	2749	3	ISM	ENSMUSG00000066880.16	ENSMUST00000119003.2	2920	4	5400	0	5400	0	3prime_fragment	FALSE	canonical	3	55	junction_2	4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTAGTGTTCTATTGCTGT	NA	False	NA	29	True	AATAAA	-17	NA	72682095	72688473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_72682173_72682981_72683043_72685862
ENSMUSG00000066880.16_9	chr8	+	1725	1	ISM	ENSMUSG00000066880.16	ENSMUST00000119003.2	2920	4	10053	0	10053	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTAGTGTTCTATTGCTGT	NA	False	NA	29	True	AATAAA	-17	NA	72686748	72688473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_72686700_72688500
ENSMUSG00000066892.15_0	chr9	-	1801	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086459.6	2086	3	285	0	-208	0	multi-exon	TRUE	canonical	3	69	junction_2	12	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20553817	20549084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20550495_20553319_20553393_20553499
ENSMUSG00000066892.15_1	chr9	-	1968	2	NIC	ENSMUSG00000066892.15	novel	2056	3	NA	NA	3	0	intron_retention	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20556048	20549084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_20550495_20555490
ENSMUSG00000066892.15_3	chr9	-	2042	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086458.10	2056	3	14	0	2	0	multi-exon	FALSE	canonical	3	47	junction_2	23	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20556049	20549084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20550495_20553319_20553393_20555490
ENSMUSG00000066892.15_4	chr9	-	858	1	FSM	ENSMUSG00000066892.15	ENSMUST00000140702.3	1555	1	694	3	694	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20549942	20549084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20549100_20549900
ENSMUSG00000066892.15_7	chr9	-	1764	4	FSM	ENSMUSG00000066892.15	ENSMUST00000131343.8	761	4	9	-1012	-2	0	multi-exon	FALSE	canonical	3	9	junction_3	34.3446583263767	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20556045	20549084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20550495_20553319_20553393_20555490_20555595_20555868
ENSMUSG00000066892.15_8	chr9	-	3781	4	FSM	ENSMUSG00000066892.15	ENSMUST00000148631.8	3756	4	-28	3	-8	0	multi-exon	FALSE	canonical	3	9	junction_3	35.3270434653114	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20556071	20549084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20550495_20553319_20553393_20553499_20555595_20555868
ENSMUSG00000066894.15_1	chr5	+	4014	10	FSM	ENSMUSG00000066894.15	ENSMUST00000111967.8	4236	10	214	8	5	0	multi-exon	FALSE	canonical	2	11	junction_3	6.48264539813992	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACATACATTTCTATG	NA	False	NA	-5	True	AATAAA	-11	NA	117457361	117493062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_117457569_117461564_117461646_117462917_117463200_117472832_117473133_117476271_117476527_117481790_117482079_117486359_117486471_117487948_117487965_117489629_117489857_117490815
ENSMUSG00000066894.15_5	chr5	+	2411	2	ISM	ENSMUSG00000066894.15	ENSMUST00000139026.2	2653	3	1718	8	1718	0	3prime_fragment	FALSE	canonical	3	23	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACATACATTTCTATG	NA	False	NA	-5	True	AATAAA	-11	NA	117489692	117493062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_117489857_117490815
ENSMUSG00000066894.15_6	chr5	+	1364	1	ISM	ENSMUSG00000066894.15	ENSMUST00000111967.8	4236	10	34551	8	3724	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACATACATTTCTATG	NA	False	NA	-5	True	AATAAA	-11	NA	117491698	117493062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_117491700_117493100
ENSMUSG00000066900.12_0	chr5	-	1624	12	FSM	ENSMUSG00000066900.12	ENSMUST00000086471.12	2425	12	45	756	45	1	multi-exon	FALSE	canonical	3	565	junction_3	37.0610396664344	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCCTTGGGCTTCTACT	NA	False	NA	-22	True	AATAAA	-16	NA	117254018	117230500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_117231097_117232974_117233060_117236335_117236442_117237365_117237388_117237541_117237604_117238664_117238761_117243219_117243377_117244710_117244731_117246412_117246485_117247822_117247879_117250874_117250945_117253736
ENSMUSG00000066900.12_13	chr5	-	2698	10	NIC	ENSMUSG00000066900.12	novel	2425	12	NA	NA	49	1	intron_retention	FALSE	canonical	3	595	junction_3	32.8039443578375	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCCTTGGGCTTCTACT	NA	False	NA	-22	True	AATAAA	-16	NA	117254014	117230500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_117231097_117232974_117233060_117236335_117237604_117238664_117238761_117243219_117243377_117244710_117244731_117246412_117246485_117247822_117247879_117250874_117250945_117253736
ENSMUSG00000066900.12_6	chr5	-	1541	13	FSM	ENSMUSG00000066900.12	ENSMUST00000166397.3	1694	13	153	0	38	0	multi-exon	FALSE	canonical	3	113	junction_1	144.428375174533	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCCTTGGGCTTCTAC	NA	False	NA	-23	True	AATAAA	-15	NA	117254025	117230501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_117230922_117231010_117231097_117232974_117233060_117236335_117236442_117237365_117237388_117237541_117237604_117238664_117238761_117243219_117243377_117244710_117244731_117246412_117246485_117247822_117247879_117250874_117250945_117253736
ENSMUSG00000066902.8_0	chr8	-	145	1	FSM	ENSMUSG00000066902.8	ENSMUST00000146939.2	432	1	326	-39	326	39	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAAAAAAAATATAGTTA	NA	False	NA	NA	False	AATAAA	-12	NA	3633904	3633759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_3633800_3633900
ENSMUSG00000066964.3_1	chr5	+	3313	5	NNC	ENSMUSG00000066964.3	novel	1827	5	NA	NA	3626	1847	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3.08220700148449	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACAATCCACTGTTTGT	NA	False	NA	10	True	AATAAA	-39	NA	113378400	113388976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_113378771_113382212_113382430_113383784_113383924_113385894_113388063_113388557
ENSMUSG00000066979.7_3	chr7	+	1329	8	FSM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	170	719	1	9	multi-exon	FALSE	canonical	3	1325	junction_6	52.1422700554033	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTTGGGTGTTTGTAAA	NA	False	NA	25	True	AATAAA	-20	NA	131162120	131172902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
ENSMUSG00000066979.7_5	chr7	+	1394	9	FSM	ENSMUSG00000066979.7	ENSMUST00000207736.2	2128	9	12	722	1	9	multi-exon	FALSE	canonical	3	44	junction_4	579.695609781547	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTTGGGTGTTTGTAAA	NA	False	NA	25	True	AATAAA	-20	NA	131162120	131172902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131164026_131164092_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
ENSMUSG00000067017.6_0	chr1	+	2923	1	Genic_Genomic	ENSMUSG00000067017.6	novel	NA	NA	NA	NA	0	64	mono-exon	FALSE	NA	NA	NA	NA	NA	1348	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAACT	NA	False	NA	NA	False	AATACA	-13	NA	105383695	105386618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_+_105383700_105386600
ENSMUSG00000067038.7_0	chr19	+	490	1	FSM	ENSMUSG00000067038.7	ENSMUST00000086764.7	396	1	-77	-17	-77	17	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGC	NA	False	NA	NA	False	AATAAA	-14	NA	59310725	59311215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_59310700_59311200
ENSMUSG00000067049.9_1	chr17	-	2666	10	NNC	ENSMUSG00000067049.9	novel	2643	10	NA	NA	-11766	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	3.99382239013587	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATCTACGTCTTGCCCAAA	NA	False	NA	NA	False	AATAAA	-18	NA	13362463	13327506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_13328741_13334386_13334519_13335065_13335202_13336506_13336725_13339647_13339774_13341630_13341861_13342156_13342339_13344453_13344599_13344823_13344878_13362254
ENSMUSG00000067058.8_0	chr5	-	455	1	FSM	ENSMUSG00000067058.8	ENSMUST00000132586.2	393	1	-30	-32	-30	32	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTAAAAAAAAAATAATAATA	NA	False	NA	NA	False	AATAAA	-15	NA	105945609	105945154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_105945200_105945600
ENSMUSG00000067071.9_0	chr1	-	1310	4	FSM	ENSMUSG00000067071.9	ENSMUST00000086851.2	1335	4	4	21	4	-21	multi-exon	FALSE	canonical	3	93	junction_1	18.4932420089069	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCTCCTGGTGTACTGT	NA	False	NA	-22	True	AATAAA	-14	NA	91340940	91339225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_91340205_91340442_91340525_91340614_91340702_91340778
ENSMUSG00000067071.9_1	chr1	-	1549	3	FSM	ENSMUSG00000067071.9	ENSMUST00000126136.8	1573	3	4	20	4	-20	multi-exon	FALSE	canonical	3	120	junction_1	9	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCCTGGTGTACTGTC	NA	False	NA	-21	True	AATAAA	-15	NA	91340940	91339224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_91340525_91340614_91340702_91340778
ENSMUSG00000067071.9_2	chr1	-	1625	2	ISM	ENSMUSG00000067071.9	ENSMUST00000126136.8	1573	3	4	21	4	-21	intron_retention	FALSE	canonical	3	120	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCTCCTGGTGTACTGT	NA	False	NA	-22	True	AATAAA	-14	NA	91340940	91339225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_91340525_91340614
ENSMUSG00000067144.8_0	chr17	-	1938	10	FSM	ENSMUSG00000067144.8	ENSMUST00000087012.7	1989	10	-17	68	-17	-68	multi-exon	FALSE	canonical	3	9	junction_9	10.8297714942322	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTGGCATTTGGGGA	2800	False	NA	NA	False	AATAAA	-22	NA	46749400	46743176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474_46745585_46745810_46745935_46747734_46747904_46748004_46748160_46748248_46748353_46748922
ENSMUSG00000067144.8_2	chr17	-	1674	9	ISM	ENSMUSG00000067144.8	ENSMUST00000233715.2	1410	10	-9	-164	-9	-66	intron_retention	FALSE	canonical	3	10	junction_7	10.8282039138539	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTGGCATTTGGGGAAG	3636	False	NA	NA	False	AATAAA	-24	NA	46748564	46743174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474_46745585_46745810_46745935_46747734_46747904_46748004_46748160_46748248
ENSMUSG00000067144.8_3	chr17	-	606	3	ISM	ENSMUSG00000067144.8	ENSMUST00000233715.2	1410	10	3917	-156	3917	-74	3prime_fragment	FALSE	canonical	3	32	junction_1	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGGCAGCTGTGGCATT	7562	False	NA	NA	False	AATAAA	-16	NA	46744638	46743182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_46743444_46743872_46744080_46744500
ENSMUSG00000067144.8_4	chr17	-	1560	10	NNC	ENSMUSG00000067144.8	novel	1989	10	NA	NA	-21	-66	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_9	11.5960827783553	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTGGCATTTGGGGAAG	3624	False	NA	NA	False	AATAAA	-24	NA	46748576	46743174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474_46745585_46745810_46745935_46747734_46747904_46748004_46748160_46748248_46748353_46748478
ENSMUSG00000067147.8_0	chrX	+	855	1	FSM	ENSMUSG00000067147.8	ENSMUST00000118791.2	801	1	-18	-36	-18	36	mono-exon	FALSE	NA	NA	NA	NA	NA	492	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATTAAAAAAAAAAGAAA	NA	False	NA	NA	False	CATAAA	-10	NA	165637188	165638043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_165637200_165638000
ENSMUSG00000067148.16_0	chr17	-	1235	9	FSM	ENSMUSG00000067148.16	ENSMUST00000087026.13	1314	9	69	10	-17	-10	multi-exon	FALSE	canonical	3	702	junction_8	54.719597723302	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTTCAGGCTTTTTTTT	NA	False	NA	-8	True	AATAAA	-15	NA	46558911	46554855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
ENSMUSG00000067148.16_4	chr17	-	1344	8	NIC	ENSMUSG00000067148.16	novel	1314	9	NA	NA	-21	-8	intron_retention	TRUE	canonical	3	702	junction_7	54.3368180511002	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCAGGCTTTTTTTTTT	NA	False	NA	-6	True	AATAAA	-17	NA	46558915	46554853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_46555147_46555231_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
ENSMUSG00000067150.7_0	chr17	+	3741	32	NNC	ENSMUSG00000067150.7	novel	5081	32	NA	NA	2	-1302	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	77.9414252168146	567	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCCTCGGTTGTCATCT	NA	False	NA	8	True	NA	NA	NA	46513744	46553219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378_46545476_46546790_46546927_46547835_46547937_46549298_46549346_46549815_46549914_46550439_46550503_46551083_46551167_46551740_46551849_46552342_46552481_46552651_46552817_46553059
ENSMUSG00000067150.7_80	chr17	+	1072	1	ISM	ENSMUSG00000067150.7	ENSMUST00000087031.7	5081	32	39741	4	12654	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGAAGGGCCCTATTTTC	NA	False	NA	10	True	AGTAAA	-12	NA	46553448	46554520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46553400_46554500
ENSMUSG00000067194.7_0	chrX	+	907	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	36	4229	36	-4229	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGTATGACTAAGCCCT	5383	False	NA	9	True	AATAAA	-21	NA	158155209	158168695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
ENSMUSG00000067194.7_24	chrX	+	1683	1	ISM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	14141	1927	14141	-1927	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATAATGGTTTTTTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	158169314	158170997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_158169300_158171000
ENSMUSG00000067199.5_0	chr19	+	1182	1	FSM	ENSMUSG00000067199.5	ENSMUST00000087155.5	2614	1	35	1397	35	-1397	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGGTTTGTTTAAAGCA	NA	False	NA	NA	False	NA	NA	NA	41818443	41819625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_41818400_41819600
ENSMUSG00000067203.9_0	chr17	-	1467	6	NNC	ENSMUSG00000067203.9	novel	1052	6	NA	NA	-14	15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9.338094023943	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAATCTGAGTCACTATGC	3667	False	NA	NA	False	AATAAA	-20	NA	34197778	34193617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_34194054_34194455_34194588_34194714_34194990_34196744_34197021_34197227_34197498_34197700
ENSMUSG00000067203.9_1	chr17	-	1561	5	FSM	ENSMUSG00000067203.9	ENSMUST00000235582.2	1567	5	20	-14	-17	14	multi-exon	FALSE	canonical	3	8	junction_3	6.10327780786685	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAATCTGAGTCACTATG	3664	False	NA	NA	False	AATAAA	-19	NA	34197781	34193618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34194054_34194470_34194588_34194714_34194990_34196844_34197498_34197700
ENSMUSG00000067219.10_0	chr5	+	1420	6	FSM	ENSMUSG00000067219.10	ENSMUST00000087212.8	4206	6	20	2766	2	689	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGCAAAAAAAAAAAAAAAA	2059	False	NA	NA	False	TATAAA	-19	NA	72805157	72825655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_72805277_72816024_72816292_72818098_72818156_72820876_72820968_72824118_72824280_72824930
ENSMUSG00000067242.12_0	chr19	+	171	1	ISM	ENSMUSG00000067242.12	ENSMUST00000198518.5	7780	8	46393	1115	45519	-1115	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAAGATTG	NA	False	NA	NA	False	NA	NA	NA	38299376	38299547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_38299400_38299500
ENSMUSG00000067261.5_0	chr4	+	2531	1	FSM	ENSMUSG00000067261.5	ENSMUST00000087285.5	2324	1	-157	-50	-157	50	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTAGTGTTTTAATTAGG	NA	False	NA	5	True	AATAAA	-15	NA	99544378	99546909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_99544400_99546900
ENSMUSG00000067274.11_1	chr5	+	1094	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	216	-22	-216	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	13770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTCCGGTCTGGATTTA	NA	False	NA	21	True	AATAAA	-15	NA	115697573	115701570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUSG00000067274.11_2	chr5	+	1071	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	318	216	162	-216	3prime_fragment	FALSE	canonical	3	6763	junction_5	6890.1060833633	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTCCGGTCTGGATTTA	NA	False	NA	21	True	AATAAA	-15	NA	115697843	115701570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUSG00000067276.6_0	chrX	-	3506	13	FSM	ENSMUSG00000067276.6	ENSMUST00000087316.6	3561	13	44	11	-38	-11	multi-exon	FALSE	canonical	3	10	junction_3	5.06348584365444	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATTGACCAGTCTTGA	NA	False	NA	NA	False	AATAAA	-11	NA	142610366	142585237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_142586823_142587352_142587490_142587670_142587793_142588390_142588594_142588758_142588882_142590241_142590429_142590522_142590601_142590836_142591031_142591613_142591807_142592290_142592500_142593840_142593973_142603291_142603473_142610204
ENSMUSG00000067279.4_0	chr19	-	2119	1	Genic_Genomic	ENSMUSG00000067279.4	novel	NA	NA	NA	NA	3412	608	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCTGCTCCACCTCTCC	NA	False	NA	NA	False	ATTAAA	-24	NA	36710641	36708522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_-_36708500_36710600
ENSMUSG00000067279.4_1	chr19	-	2736	2	NNC	ENSMUSG00000067279.4	novel	2725	2	NA	NA	-8	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGACCCGAGAATGTTTT	NA	False	NA	-5	True	AATAAA	-11	NA	36714061	36709136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_36711755_36713943
ENSMUSG00000067279.4_2	chr19	-	2729	2	FSM	ENSMUSG00000067279.4	ENSMUST00000087321.4	2725	2	-10	6	-10	-6	multi-exon	FALSE	canonical	3	11	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGACCCGAGAATGTTTT	NA	False	NA	-5	True	AATAAA	-11	NA	36714063	36709136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_36711755_36713952
ENSMUSG00000067288.14_0	chr17	-	313	4	FSM	ENSMUSG00000067288.14	ENSMUST00000173844.8	382	4	67	2	-1	0	multi-exon	FALSE	canonical	3	11527	junction_1	4307.03060897722	2001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043469	34042025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34042091_34042166_34042305_34043272_34043321_34043407
ENSMUSG00000067288.14_1	chr17	-	309	4	FSM	ENSMUSG00000067288.14	ENSMUST00000087342.13	392	4	67	16	-1	0	multi-exon	FALSE	canonical	3	4589	junction_1	7337.59253585413	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043469	34042025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34042091_34042170_34042305_34043272_34043321_34043407
ENSMUSG00000067299.12_0	chr1	-	336	1	Genic_Genomic	ENSMUSG00000067299.12	novel	NA	NA	NA	NA	1123	29	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTATTTGCTTCTGTTTTT	8894	False	NA	-5	True	AATAAA	-23	NA	65101337	65101001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_-_65101000_65101300
ENSMUSG00000067299.12_1	chr1	-	681	3	FSM	ENSMUSG00000067299.12	ENSMUST00000045028.15	613	3	-45	-23	-45	23	multi-exon	FALSE	canonical	3	39	junction_1	4.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCACTTATTTGCTTCT	7575	False	NA	-11	True	AATAAA	-17	NA	65102656	65101007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_65101342_65102217_65102461_65102552
ENSMUSG00000067299.12_2	chr1	-	416	2	ISM	ENSMUSG00000067299.12	ENSMUST00000045028.15	613	3	318	-29	167	29	3prime_fragment	FALSE	canonical	3	39	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTATTTGCTTCTGTTTTT	7938	False	NA	-5	True	AATAAA	-23	NA	65102293	65101001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_65101342_65102217
ENSMUSG00000067336.7_1	chr1	+	5794	13	FSM	ENSMUSG00000067336.7	ENSMUST00000087435.7	12899	13	53	7052	53	-7052	multi-exon	FALSE	canonical	0	0	junction_11	3.93347457373532	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTGAGGAGTTTTCCC	NA	False	NA	NA	False	AATAAA	-12	NA	59802611	59911121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_59803888_59852746_59852918_59854399_59854571_59880589_59880701_59881901_59881994_59884636_59884868_59886216_59886332_59890336_59890498_59891452_59891601_59898331_59898469_59902939_59903113_59906494_59907775_59909393
ENSMUSG00000067336.7_3	chr1	+	4081	12	ISM	ENSMUSG00000067336.7	ENSMUST00000087435.7	12899	13	102	10335	102	-10335	5prime_fragment	FALSE	canonical	0	0	junction_11	3.62041959122543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTAGTGACTCTTTACC	NA	False	NA	NA	False	AATAAA	-20	NA	59802660	59907838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_59803888_59852746_59852918_59854399_59854571_59880589_59880701_59881901_59881994_59884636_59884868_59886216_59886332_59890336_59890498_59891452_59891601_59898331_59898469_59902939_59903113_59906494
ENSMUSG00000067336.7_8	chr1	+	4667	1	ISM	ENSMUSG00000067336.7	ENSMUST00000087435.7	12899	13	109544	1404	21467	-1404	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACAGTAAGTGTATTTTT	NA	False	NA	4	True	ATTAAA	-14	NA	59912102	59916769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_59912100_59916800
ENSMUSG00000067338.7_0	chr6	+	1507	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	264	4	264	-4	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	1205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACATTTGCTTCCCTGTG	NA	False	NA	12	True	AATAAA	-32	NA	145561746	145567201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
ENSMUSG00000067344.8_1	chr6	+	469	1	FSM	ENSMUSG00000067344.8	ENSMUST00000119876.2	378	1	-43	-48	-43	48	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAAGTTGAAGC	848	False	NA	NA	False	AATAAA	-14	NA	145212082	145212551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_145212100_145212600
ENSMUSG00000067360.13_0	chrX	+	3668	5	FSM	ENSMUSG00000067360.13	ENSMUST00000118821.8	3698	5	30	0	21	0	multi-exon	FALSE	canonical	3	77	junction_4	43.9964487203229	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCATGAGATTCATTTA	NA	False	NA	NA	False	AGTAAA	-16	NA	134203085	134213401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134203188_134203385_134203513_134208081_134208382_134209685_134210271_134210847
ENSMUSG00000067360.13_2	chrX	+	3815	5	NNC	ENSMUSG00000067360.13	novel	3698	5	NA	NA	20	154	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_2	62.9563340737054	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134203084	134213555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_134203188_134203385_134203505_134208081_134208382_134209685_134210271_134210847
ENSMUSG00000067360.13_3	chrX	+	5130	4	NIC	ENSMUSG00000067360.13	novel	3698	5	NA	NA	20	157	intron_retention	FALSE	canonical	3	77	junction_3	47.6934656600531	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTATTGGTTCTTCGT	NA	False	NA	NA	False	ATTAAA	-13	NA	134203084	134213558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134203188_134203385_134203513_134208081_134210271_134210847
ENSMUSG00000067360.13_7	chrX	+	4740	2	NIC	ENSMUSG00000067360.13	novel	3698	5	NA	NA	5174	154	intron_retention	FALSE	canonical	3	77	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134208238	134213555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134210271_134210847
ENSMUSG00000067360.13_9	chrX	+	2358	1	Genic_Genomic	ENSMUSG00000067360.13	novel	NA	NA	NA	NA	8133	154	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134211197	134213555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_134211200_134213600
ENSMUSG00000067365.12_0	chr5	+	1085	5	FSM	ENSMUSG00000067365.12	ENSMUST00000087511.10	1291	5	197	9	-2	-9	multi-exon	FALSE	canonical	3	200	junction_4	19.5751756058534	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGCATTTGGTTAATG	NA	False	NA	NA	False	AATAAA	-16	NA	38417725	38426969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38426402
ENSMUSG00000067365.12_1	chr5	+	727	5	FSM	ENSMUSG00000067365.12	ENSMUST00000119047.8	726	5	-9	8	4	-5	multi-exon	FALSE	canonical	3	18	junction_4	95.0167748347627	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTCTGCCCTTTTTAT	NA	False	NA	3	True	NA	NA	NA	38417718	38425243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38425041
ENSMUSG00000067365.12_6	chr5	+	383	1	ISM	ENSMUSG00000067365.12	ENSMUST00000087511.10	1291	5	9054	13	4342	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTCTTGTGCATTTGGTT	NA	False	NA	NA	False	AATAAA	-12	NA	38426582	38426965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_38426600_38427000
ENSMUSG00000067365.12_7	chr5	+	3288	4	NIC	ENSMUSG00000067365.12	novel	1291	5	NA	NA	-2	-14	intron_retention	FALSE	canonical	3	200	junction_3	21.9241115365405	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTTGTGCATTTGGT	NA	False	NA	NA	False	AATAAA	-11	NA	38417725	38426964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_38417837_38419340_38419483_38422155_38424629_38426402
ENSMUSG00000067367.10_0	chr5	+	1497	9	FSM	ENSMUSG00000067367.10	ENSMUST00000087514.9	1563	9	57	9	0	1	multi-exon	FALSE	canonical	3	2026	junction_5	151.553981719386	1318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGTATCTATGATAAC	NA	False	NA	14	True	AATAAA	-15	NA	38377870	38391641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_38377980_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUSG00000067367.10_3	chr5	+	1594	10	NIC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	182	junction_2	844.746612604142	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGTATCTATGATAAC	NA	False	NA	14	True	AATAAA	-15	NA	38377871	38391641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUSG00000067367.10_4	chr5	+	1589	10	NIC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	190	junction_2	843.03156656333	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGTATCTATGATAAC	NA	False	NA	14	True	AATAAA	-15	NA	38377872	38391641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_38377980_38380477_38380572_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUSG00000067369.13_14	chrX	-	2775	12	ISM	ENSMUSG00000067369.13	ENSMUST00000113252.8	3128	14	9554	7	9554	-7	3prime_fragment	FALSE	canonical	1	13	junction_4	11.7936808966034	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTAACTGTATTCACTAT	NA	False	NA	-17	True	AATAAA	-11	NA	133168115	133123855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079
ENSMUSG00000067369.13_16	chrX	-	1754	4	NIC	ENSMUSG00000067369.13	novel	4099	12	NA	NA	-8	4	intron_retention	FALSE	canonical	3	48	junction_1	4.32049379893857	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTCTCCGCATTGTCA	NA	False	NA	-3	True	AGTAAA	-18	NA	133177684	133163232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_133164611_133167009_133167065_133168079_133168311_133177594
ENSMUSG00000067369.13_17	chrX	-	911	5	ISM	ENSMUSG00000067369.13	ENSMUST00000145066.2	3237	12	-8	39389	-8	3	5prime_fragment	FALSE	canonical	3	42	junction_1	5.7227615711298	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGTCTCCGCATTGTC	NA	False	NA	-4	True	AGTAAA	-17	NA	133177684	133163233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
ENSMUSG00000067369.13_3	chrX	-	3065	13	FSM	ENSMUSG00000067369.13	ENSMUST00000087541.12	3119	13	47	7	-8	-2	multi-exon	FALSE	canonical	1	13	junction_4	11.7686022959398	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTCACTATCTCTA	NA	False	NA	-12	True	AATAAA	-16	NA	133177684	133123850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
ENSMUSG00000067369.13_4	chrX	-	1739	3	ISM	ENSMUSG00000067369.13	ENSMUST00000113252.8	3128	14	38424	-3	38424	-1	3prime_fragment	FALSE	canonical	3	26	junction_2	7	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCACTATCTCTAGTCCA	NA	False	NA	-7	True	AATAAA	-21	NA	133139245	133123845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_133125455_133138891_133138992_133139215
ENSMUSG00000067369.13_6	chrX	-	3146	14	FSM	ENSMUSG00000067369.13	ENSMUST00000113252.8	3128	14	-15	-3	-8	-1	multi-exon	TRUE	canonical	1	5	junction_12	15.8476474277441	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCACTATCTCTAGTCCA	NA	False	NA	-7	True	AATAAA	-21	NA	133177684	133123845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133171258_133171335_133177594
ENSMUSG00000067370.5_0	chr17	-	1517	2	Genic_Genomic	ENSMUSG00000067370.5	novel	1580	1	NA	NA	-310	-2	multi-exon	FALSE	canonical	3	7	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGTGCAGCGTCTTCACC	NA	False	NA	-4	True	AATAAA	-15	NA	34170772	34168884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_34170253_34170623
ENSMUSG00000067370.5_1	chr17	-	1534	1	FSM	ENSMUSG00000067370.5	ENSMUST00000087543.5	1580	1	44	2	44	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGTGCAGCGTCTTCACC	NA	False	NA	-4	True	AATAAA	-15	NA	34170418	34168884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34168900_34170400
ENSMUSG00000067377.13_0	chrX	-	1682	8	FSM	ENSMUSG00000067377.13	ENSMUST00000087557.12	1765	8	78	5	-57	-5	multi-exon	FALSE	canonical	3	78	junction_3	4.33777898591114	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAATCGTTTTAATTT	NA	False	NA	-1	True	AATAAA	-37	NA	132799100	132791821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_132792673_132793410_132793516_132795247_132795332_132795676_132795812_132796183_132796283_132797431_132797507_132797872_132798062_132798956
ENSMUSG00000067424.14_0	chr17	+	3906	4	FSM	ENSMUSG00000067424.14	ENSMUST00000140829.2	758	4	22	-3170	22	-2477	multi-exon	FALSE	canonical	3	19	junction_1	2.05480466765633	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATAACTTTGTTAGCGT	NA	False	NA	NA	False	NA	NA	NA	33311453	33327202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33311567_33321204_33321332_33321516_33321578_33323597
ENSMUSG00000067424.14_3	chr17	+	4192	1	ISM	ENSMUSG00000067424.14	ENSMUST00000131722.9	6440	4	15857	1347	12709	-1347	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATTTGGTAATATTTGC	NA	False	NA	NA	False	AGTAAA	-13	NA	33324140	33328332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33324100_33328300
ENSMUSG00000067424.14_4	chr17	+	3826	4	FSM	ENSMUSG00000067424.14	ENSMUST00000131722.9	6440	4	8	2606	8	-2606	multi-exon	FALSE	canonical	1	2	junction_1	9.7410927974683	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGGGTATTGCTATGT	NA	False	NA	NA	False	NA	NA	NA	33308291	33327073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33308454_33321204_33321332_33321516_33321578_33323597
ENSMUSG00000067430.8_0	chr17	-	3389	4	FSM	ENSMUSG00000067430.8	ENSMUST00000087654.5	3407	4	17	1	17	-1	multi-exon	FALSE	canonical	3	84	junction_1	5.73488351136175	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCTGTTCAAATGAGATT	2776	False	NA	-17	True	NA	NA	NA	33252359	33235837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33238944_33240431_33240484_33240679_33240807_33252255
ENSMUSG00000067430.8_1	chr17	-	2692	1	Genic_Genomic	ENSMUSG00000067430.8	novel	NA	NA	NA	NA	13621	7	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGAGATTTTTGTGTA	NA	False	NA	-9	True	NA	NA	NA	33238521	33235829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_33235800_33238500
ENSMUSG00000067438.6_0	chr5	+	1797	2	FSM	ENSMUSG00000067438.6	ENSMUST00000087674.6	1526	2	-282	11	-273	-11	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTTCTTGATGGACTCGC	NA	False	NA	NA	False	AATAAA	-7	NA	35546178	35550223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_35546834_35549081
ENSMUSG00000067529.3_0	chr19	-	226	1	ISM	ENSMUSG00000067529.3	ENSMUST00000214472.2	5570	4	7510	1795	2933	-1795	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATGTCATCTTAAAATT	NA	False	NA	NA	False	TATAAA	-29	NA	12011171	12010945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_12010900_12011200
ENSMUSG00000067547.7_0	chr15	+	991	1	FSM	ENSMUSG00000067547.7	ENSMUST00000146631.2	819	1	-51	-121	-51	121	mono-exon	FALSE	NA	NA	NA	NA	NA	239	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	6683352	6684343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_6683400_6684300
ENSMUSG00000067561.13_10	chrX	-	1361	8	NIC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	62	2	combination_of_known_splicesites	FALSE	canonical	3	35	junction_7	51.90218429598	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGCCCAGGTCTTCACT	NA	False	NA	NA	False	AATAAA	-14	NA	101898160	101891242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101898030
ENSMUSG00000067561.13_17	chrX	-	3096	6	NIC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	59	2	intron_retention	FALSE	canonical	3	169	junction_2	11.4262854856686	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGCCCAGGTCTTCACT	NA	False	NA	NA	False	AATAAA	-14	NA	101898163	101891242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_101891758_101893920_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311
ENSMUSG00000067561.13_20	chrX	-	3973	3	NIC	ENSMUSG00000067561.13	novel	1255	8	NA	NA	43	0	intron_retention	FALSE	canonical	3	181	junction_2	11	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101897701	101891244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_101891758_101893920_101895315_101895635
ENSMUSG00000067561.13_3	chrX	-	2959	7	ISM	ENSMUSG00000067561.13	ENSMUST00000120314.8	1611	9	11	-4	11	4	intron_retention	FALSE	canonical	3	158	junction_2	13.9363633069113	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCCAGGTCTTCACTGT	NA	False	NA	NA	False	AATAAA	-16	NA	101898211	101891240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311
ENSMUSG00000067561.13_31	chrX	-	1645	8	ISM	ENSMUSG00000067561.13	ENSMUST00000120314.8	1611	9	69	-2	69	2	intron_retention	FALSE	canonical	0	0	junction_7	63.8378046781251	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGCCCAGGTCTTCACT	NA	False	NA	NA	False	AATAAA	-14	NA	101898153	101891242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101897739
ENSMUSG00000067561.13_44	chrX	-	4815	2	ISM	ENSMUSG00000067561.13	ENSMUST00000120314.8	1611	9	4	-4	4	4	intron_retention	FALSE	canonical	3	203	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCCAGGTCTTCACTGT	NA	False	NA	NA	False	AATAAA	-16	NA	101898218	101891240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_101891758_101893920
ENSMUSG00000067561.13_7	chrX	-	1586	9	FSM	ENSMUSG00000067561.13	ENSMUST00000120314.8	1611	9	27	-2	27	2	multi-exon	FALSE	canonical	0	0	junction_7	64.8072864344743	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGCCCAGGTCTTCACT	NA	False	NA	NA	False	AATAAA	-14	NA	101898195	101891242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101897739_101897930_101898030
ENSMUSG00000067561.13_8	chrX	-	1424	8	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	27	2	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_7	44.1518714790442	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGCCCAGGTCTTCACT	NA	False	NA	NA	False	AATAAA	-14	NA	101898195	101891242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101898002
ENSMUSG00000067562.12_0	chrX	+	1392	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	59	2	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	44.698993277254	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGCCCAGGTCTTCACT	NA	False	NA	NA	False	AATAAA	-14	NA	101846627	101853550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_101846789_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ENSMUSG00000067562.12_1	chrX	+	2942	7	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	24	0	intron_retention	FALSE	canonical	3	157	junction_5	15.0959891656323	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846592	101853548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ENSMUSG00000067562.12_13	chrX	+	4405	3	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	89	0	intron_retention	FALSE	canonical	3	178	junction_1	13	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846657	101853548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_101849156_101849476_101850871_101853035
ENSMUSG00000067562.12_24	chrX	+	1679	2	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	1873	-3	intron_retention	FALSE	canonical	3	204	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGACACTGCCCAGGTCT	317	False	NA	NA	False	AATAAA	-9	NA	101849701	101853545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_101850871_101853035
ENSMUSG00000067562.12_4	chrX	+	1552	9	FSM	ENSMUSG00000067562.12	ENSMUST00000118218.8	1611	9	61	-2	61	2	multi-exon	FALSE	canonical	0	0	junction_2	65.1257197656963	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGCCCAGGTCTTCACT	NA	False	NA	NA	False	AATAAA	-14	NA	101846629	101853550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_101846761_101846861_101847052_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ENSMUSG00000067562.12_5	chrX	+	3572	4	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	50	4	intron_retention	FALSE	canonical	3	167	junction_2	15.5134350376268	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCCAGGTCTTCACTGT	NA	False	NA	NA	False	AATAAA	-16	NA	101846618	101853552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_101849156_101849476_101849614_101850489_101850871_101853035
ENSMUSG00000067562.12_6	chrX	+	2865	8	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	2	2	intron_retention	FALSE	canonical	3	75	junction_1	38.7661750309547	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGCCCAGGTCTTCACT	NA	False	NA	NA	False	AATAAA	-14	NA	101846570	101853550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_101846761_101846861_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ENSMUSG00000067562.12_9	chrX	+	1391	8	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	30	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	52.0670682085782	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846598	101853548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_101846761_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ENSMUSG00000067567.13_0	chrX	-	1720	11	FSM	ENSMUSG00000067567.13	ENSMUST00000087916.11	1936	11	215	1	2	-1	multi-exon	FALSE	canonical	3	41	junction_1	12.0747670784989	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTCGTCCCACCGCTCTG	NA	False	NA	-2	True	AATAAA	-14	NA	101548750	101328245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_101328775_101351244_101351351_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
ENSMUSG00000067567.13_5	chrX	-	1348	8	ISM	ENSMUSG00000067567.13	ENSMUST00000087916.11	1936	11	215	120540	2	468	5prime_fragment	FALSE	canonical	3	43	junction_3	11.0027825794113	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGACTGTGGGTGTCTTCT	NA	False	NA	NA	False	AATAAA	-45	NA	101548750	101448784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
ENSMUSG00000067575.6_0	chr17	-	418	1	FSM	ENSMUSG00000067575.6	ENSMUST00000147311.2	333	1	-50	-35	-50	35	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAATAAAAAA	NA	False	NA	NA	False	TTTAAA	-35	NA	29356328	29355910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29355900_29356300
ENSMUSG00000067586.5_0	chr13	+	3658	2	FSM	ENSMUSG00000067586.5	ENSMUST00000087978.5	4463	2	127	678	127	-678	multi-exon	FALSE	canonical	3	36	junction_1	0	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAACCCATCCTGGAGG	NA	False	NA	0	True	AATAAA	-18	NA	51562801	51576155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_51562982_51572677
ENSMUSG00000067586.5_1	chr13	+	2236	1	ISM	ENSMUSG00000067586.5	ENSMUST00000087978.5	4463	2	11253	670	11253	-670	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGGAGGCCTGTGTG	NA	False	NA	8	True	AATAAA	-26	NA	51573927	51576163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_51573900_51576200
ENSMUSG00000067608.6_0	chr19	+	1247	1	FSM	ENSMUSG00000067608.6	ENSMUST00000088040.6	781	1	-140	-326	-140	326	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGTCAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	9260603	9261850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_9260600_9261800
ENSMUSG00000067642.12_1	chr5	-	3033	3	NIC	ENSMUSG00000067642.12	novel	3099	14	NA	NA	-1979	294	intron_retention	FALSE	canonical	2	4	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCACATGAGCCTGTGTG	4691	False	NA	NA	False	AATAAA	-44	NA	30403395	30398134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_30398560_30400040_30402614_30403360
ENSMUSG00000067649.4_2	chrX	-	2088	1	FSM	ENSMUSG00000067649.4	ENSMUST00000088137.3	1571	1	-201	-316	-201	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGTAATACATGTTTAC	NA	False	NA	NA	False	AATAAA	-7	NA	91164578	91162490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_91162500_91164600
ENSMUSG00000067653.13_1	chr1	-	2303	8	ISM	ENSMUSG00000067653.13	ENSMUST00000054665.10	1964	9	1245	-340	1245	-6	3prime_fragment	FALSE	canonical	3	38	junction_4	9.04636582799289	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCAGCCTGGTTGCCTCA	NA	False	NA	NA	False	ATTAAA	-13	NA	36573575	36569274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_36570723_36570803_36570903_36570989_36571089_36571192_36571292_36571382_36571482_36571661_36571788_36573067_36573197_36573371
ENSMUSG00000067653.13_2	chr1	-	2657	11	Fusion	ENSMUSG00000067653.13_ENSMUSG00000079610.10	novel	2277	9	NA	NA	31	-6	multi-exon	FALSE	canonical	0	0	junction_8	18.6496648763456	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCAGCCTGGTTGCCTCA	7057	False	NA	NA	False	ATTAAA	-13	NA	36586269	36569274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr1_-_36570723_36570803_36570903_36570989_36571089_36571192_36571292_36571382_36571482_36571661_36571788_36573067_36573197_36573371_36573519_36580939_36581144_36581842_36581947_36586166
ENSMUSG00000067653.13_3	chr1	-	2652	11	Fusion	ENSMUSG00000067653.13_ENSMUSG00000079610.10	novel	2277	9	NA	NA	208	-10	multi-exon	FALSE	canonical	0	0	junction_8	21.7126691127553	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACCTCAGCCTGGTTGC	7234	False	NA	NA	False	ATTAAA	-9	NA	36586092	36569278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr1_-_36570723_36570803_36570903_36570989_36571089_36571192_36571292_36571382_36571482_36571661_36571788_36573067_36573197_36573371_36573519_36580939_36581144_36581842_36581947_36585990
ENSMUSG00000067702.6_0	chr6	-	1491	5	FSM	ENSMUSG00000067702.6	ENSMUST00000088246.6	1509	5	3	15	3	-15	multi-exon	FALSE	canonical	3	590	junction_2	43.4453679924569	661	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTCTAGACTGAGGCA	3464	False	NA	-23	True	AATAAA	-13	NA	125263002	125255251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
ENSMUSG00000067713.8_0	chr15	-	1599	12	FSM	ENSMUSG00000067713.8	ENSMUST00000168846.3	1652	12	51	2	-16	-2	multi-exon	FALSE	canonical	3	244	junction_11	39.9075377622816	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCAGTGTTTGATTTCT	9400	False	NA	-6	True	ATTAAA	-20	NA	98729351	98710679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98729310
ENSMUSG00000067713.8_3	chr15	-	2035	12	NIC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	92	-1	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	100.554249163292	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTTGATTTCTG	9508	False	NA	-5	True	ATTAAA	-21	NA	98729243	98710678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98728767
ENSMUSG00000067713.8_8	chr15	-	1559	11	ISM	ENSMUSG00000067713.8	ENSMUST00000168846.3	1652	12	5787	2	394	-2	3prime_fragment	FALSE	canonical	3	338	junction_2	19.5757503049053	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCAGTGTTTGATTTCT	4538	False	NA	-6	True	ATTAAA	-20	NA	98723615	98710679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568
ENSMUSG00000067714.14_1	chr6	+	2947	2	FSM	ENSMUSG00000067714.14_ENSMUSG00000107761.2	ENSMUST00000088292.7	1393	2	5	-1559	5	2	multi-exon	FALSE	canonical	2	17	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATGGAAATACAGAAGCAC	5043	False	NA	NA	False	NA	NA	NA	125044887	125060994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125044940_125058099
ENSMUSG00000067714.14_3	chr6	+	3020	3	Fusion	ENSMUSG00000067714.14_ENSMUSG00000107761.2	novel	1393	2	NA	NA	19	-2	multi-exon	FALSE	canonical	2	4	junction_1	4	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGACATGGAAATACAGAA	5057	False	NA	NA	False	NA	NA	NA	125044901	125060990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr6_+_125044940_125045239_125045331_125058099
ENSMUSG00000067714.14_4	chr6	+	2728	2	Fusion	ENSMUSG00000067714.14_ENSMUSG00000107761.2	novel	1393	2	NA	NA	50	-563	multi-exon	FALSE	canonical	3	12	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTCTTTTTGTTTTGTT	5088	False	NA	22	True	NA	NA	NA	125044932	125060429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr6_+_125045331_125058099
ENSMUSG00000067714.14_5	chr6	+	3066	2	FSM	ENSMUSG00000067714.14_ENSMUSG00000107761.2	ENSMUST00000171989.3	1458	2	-43	-1565	-43	8	multi-exon	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACAGAAGCACACATTC	8352	False	NA	NA	False	NA	NA	NA	125048196	125061000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125048362_125058099
ENSMUSG00000067719.6_0	chr5	-	431	1	FSM	ENSMUSG00000067719.6	ENSMUST00000088299.6	309	1	-26	-96	-26	96	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAACAAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	24786886	24786455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24786500_24786900
ENSMUSG00000067722.5_0	chr17	+	866	2	FSM	ENSMUSG00000067722.5	ENSMUST00000088307.5	3030	2	36	2128	36	-2128	multi-exon	FALSE	canonical	3	314	junction_1	0	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAATTTTCTCACCTCC	NA	False	NA	13	True	AATACA	-18	NA	25403563	25404508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25403615_25403693
ENSMUSG00000067722.5_1	chr17	+	1262	1	FSM	ENSMUSG00000067722.5	ENSMUST00000232784.2	3109	1	42	1805	42	-1805	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAACAAAACATCAAT	NA	False	NA	-16	True	NA	NA	NA	25403569	25404831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25403600_25404800
ENSMUSG00000067764.12_1	chrX	-	1053	8	NIC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	31	-473	combination_of_known_splicesites	FALSE	canonical	3	126	junction_6	133.486986295309	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336551	72326974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
ENSMUSG00000067764.12_2	chrX	-	1023	8	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-17	-474	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_7	157.992508218147	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTGCATGCTTTCAT	NA	False	NA	NA	False	AATAAA	-13	NA	72336599	72326975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336558
ENSMUSG00000067764.12_4	chrX	-	1147	9	FSM	ENSMUSG00000067764.12	ENSMUST00000114503.9	1656	9	33	476	33	-476	multi-exon	FALSE	canonical	3	126	junction_7	127.059963698248	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTCTGTGCATGCTTTC	NA	False	NA	NA	False	AATAAA	-11	NA	72336549	72326977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
ENSMUSG00000067764.12_5	chrX	-	1120	9	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-15	-474	at_least_one_novel_splicesite	TRUE	canonical	3	96	junction_8	149.667913645511	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTGCATGCTTTCAT	NA	False	NA	NA	False	AATAAA	-13	NA	72336597	72326975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336558
ENSMUSG00000067764.12_8	chrX	-	1080	8	ISM	ENSMUSG00000067764.12	ENSMUST00000114503.9	1656	9	2429	476	-32	-476	3prime_fragment	FALSE	canonical	3	126	junction_7	134.979363502087	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTCTGTGCATGCTTTC	NA	False	NA	NA	False	AATAAA	-11	NA	72334153	72326977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015
ENSMUSG00000067768.13_10	chrX	+	6184	3	NIC	ENSMUSG00000067768.13	novel	1744	9	NA	NA	5	-1	intron_retention	FALSE	canonical	3	151	junction_2	31	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTGTTGGCATGAGTC	NA	False	NA	14	True	AATAAA	-14	NA	72257960	72266055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_72263679_72265472_72265569_72265685
ENSMUSG00000067768.13_16	chrX	+	371	1	ISM	ENSMUSG00000067768.13	ENSMUST00000069077.10	1200	9	7731	3	3717	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	15	True	AATAAA	-15	NA	72265685	72266056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72265700_72266100
ENSMUSG00000067768.13_2	chrX	+	1147	9	NIC	ENSMUSG00000067768.13	novel	1077	9	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_1	78.4071903590481	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	15	True	AATAAA	-15	NA	72257980	72266056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_72258064_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUSG00000067768.13_4	chrX	+	1186	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069077.10	1200	9	11	3	10	0	multi-exon	FALSE	canonical	3	74	junction_1	80.9281123899477	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	15	True	AATAAA	-15	NA	72257965	72266056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72258088_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUSG00000067768.13_5	chrX	+	1585	8	NIC	ENSMUSG00000067768.13	novel	1744	9	NA	NA	1	-1	intron_retention	FALSE	canonical	3	74	junction_1	86.4041287751214	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	17	True	AATAAA	-17	NA	72257939	72266058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_72258088_72258379_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUSG00000067768.13_7	chrX	+	4332	5	NIC	ENSMUSG00000067768.13	novel	1744	9	NA	NA	4	-1	intron_retention	FALSE	canonical	3	151	junction_4	41.8807831827438	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	17	True	AATAAA	-17	NA	72257942	72266058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_72258962_72259646_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUSG00000067771.10_0	chrX	+	3044	5	NNC	ENSMUSG00000067771.10	novel	2773	4	NA	NA	440	1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	17.8798070459387	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTGTAGATGTCTAAG	NA	False	NA	NA	False	AATAAA	-17	NA	72161092	72172867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_72161363_72166673_72166742_72167034_72167132_72168423_72168590_72170424
ENSMUSG00000067771.10_1	chrX	+	2948	6	NNC	ENSMUSG00000067771.10	novel	2864	5	NA	NA	21	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	22.4499443206436	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTAGATGTCTAAGAC	NA	False	NA	NA	False	AATAAA	-19	NA	72160673	72172869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_72160742_72166217_72166322_72166673_72166742_72167034_72167132_72168423_72168590_72170424
ENSMUSG00000067771.10_11	chrX	+	1784	1	ISM	ENSMUSG00000067771.10	ENSMUST00000088459.9	2864	5	10431	1	4410	1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTGTAGATGTCTAAG	NA	False	NA	NA	False	AATAAA	-17	NA	72171083	72172867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_72171100_72172900
ENSMUSG00000067771.10_14	chrX	+	2774	4	FSM	ENSMUSG00000067771.10	ENSMUST00000179117.2	2773	4	0	-1	0	1	multi-exon	FALSE	canonical	3	54	junction_3	2.44948974278318	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTGTAGATGTCTAAG	NA	False	NA	NA	False	AATAAA	-17	NA	72166673	72172867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72166742_72167034_72167132_72168423_72168590_72170424
ENSMUSG00000067771.10_4	chrX	+	2843	5	FSM	ENSMUSG00000067771.10	ENSMUST00000088459.9	2864	5	22	-1	22	1	multi-exon	FALSE	canonical	3	20	junction_1	16.161296358894	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTAGATGTCTAAGAC	NA	False	NA	NA	False	AATAAA	-19	NA	72160674	72172869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72160742_72166673_72166742_72167034_72167132_72168423_72168590_72170424
ENSMUSG00000067787.11_0	chr2	-	2047	2	FSM	ENSMUSG00000067787.11	ENSMUST00000109528.9	2056	2	8	1	2	-1	multi-exon	FALSE	canonical	3	207	junction_1	0	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGGTTTTATGTGGC	NA	False	NA	-13	True	AATAAA	-15	NA	157408249	157398282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_157400248_157408167
ENSMUSG00000067787.11_1	chr2	-	1483	1	ISM	ENSMUSG00000067787.11	ENSMUST00000109528.9	2056	2	8492	1	2162	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGGTTTTATGTGGC	7849	False	NA	-13	True	AATAAA	-15	NA	157399765	157398282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_157398300_157399800
ENSMUSG00000067825.12_1	chr6	+	3856	5	FSM	ENSMUSG00000067825.12	ENSMUST00000088561.10	4093	5	226	11	4	-4	multi-exon	FALSE	canonical	3	35	junction_4	5.31507290636732	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAATAATTTCATCTG	NA	False	NA	NA	False	NA	NA	NA	121160851	121173140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_121161442_121162668_121162810_121164217_121164526_121167059_121167207_121170470
ENSMUSG00000067825.12_11	chr6	+	3057	3	ISM	ENSMUSG00000067825.12	ENSMUST00000088561.10	4093	5	3591	80	3360	-73	3prime_fragment	FALSE	canonical	3	35	junction_2	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACAAAGATTTTTATAT	NA	False	NA	NA	False	NA	NA	NA	121164216	121173071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_121164526_121167059_121167207_121170470
ENSMUSG00000067825.12_14	chr6	+	1630	1	ISM	ENSMUSG00000067825.12	ENSMUST00000118234.8	3778	4	10889	0	10658	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAATTTCATCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	121171514	121173144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_121171500_121173100
ENSMUSG00000067825.12_3	chr6	+	3561	4	FSM	ENSMUSG00000067825.12	ENSMUST00000118234.8	3778	4	213	4	-9	-4	multi-exon	FALSE	canonical	3	4	junction_2	19.1543438647449	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAATAATTTCATCTG	NA	False	NA	NA	False	NA	NA	NA	121160838	121173140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_121161442_121162668_121162810_121167059_121167207_121170470
ENSMUSG00000067825.12_5	chr6	+	3847	5	FSM	ENSMUSG00000067825.12	ENSMUST00000120066.8	3861	5	10	4	1	-4	multi-exon	FALSE	canonical	2	7	junction_4	16.7406690427832	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAATAATTTCATCTG	NA	False	NA	NA	False	NA	NA	NA	121160857	121173140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_121161442_121162668_121162810_121164217_121164526_121167059_121167207_121170473
ENSMUSG00000067847.14_0	chr2	+	369	3	FSM	ENSMUSG00000067847.14	ENSMUST00000088610.11	569	3	196	4	2	-1	multi-exon	FALSE	canonical	3	748	junction_1	118.5	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCAGTCTATTTTTACCT	6547	False	NA	13	True	AATAAA	-18	NA	155986154	155987713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_155986201_155986378_155986510_155987521
ENSMUSG00000067847.14_1	chr2	+	383	3	FSM	ENSMUSG00000067847.14	ENSMUST00000119950.2	379	3	-5	1	2	-1	multi-exon	FALSE	canonical	3	37	junction_1	474	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCAGTCTATTTTTACCT	6547	False	NA	13	True	AATAAA	-18	NA	155986154	155987713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_155986201_155986364_155986510_155987521
ENSMUSG00000067847.14_3	chr2	+	503	2	FSM	ENSMUSG00000067847.14	ENSMUST00000109597.10	550	2	46	1	39	-1	multi-exon	FALSE	canonical	3	985	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCAGTCTATTTTTACCT	6591	False	NA	13	True	AATAAA	-18	NA	155986198	155987713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_155986510_155987521
ENSMUSG00000067851.12_0	chr1	-	7358	38	FSM	ENSMUSG00000067851.12	ENSMUST00000088615.11	6978	38	-400	20	-400	-20	multi-exon	TRUE	canonical	3	88	junction_35	18.4564716033902	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGTGCAGTGTAACCCAC	NA	False	NA	-36	True	AATAAA	-17	NA	10303295	10207815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_10209222_10210691_10210810_10211783_10211923_10212800_10212970_10214942_10215083_10217627_10217761_10222025_10222099_10223610_10223750_10223831_10223968_10224505_10224636_10227138_10227270_10228124_10228286_10229792_10229966_10230101_10230254_10230925_10231096_10231187_10231229_10233921_10234013_10243058_10243210_10243418_10243578_10244291_10244421_10250050_10250203_10251094_10251267_10253887_10253973_10254200_10254407_10254610_10254723_10258981_10259184_10259451_10259561_10259663_10259904_10264481_10264717_10269067_10269202_10269953_10270130_10275032_10275135_10279649_10279927_10283268_10283449_10284349_10284497_10286061_10286219_10286753_10286785_10302595
ENSMUSG00000067851.12_45	chr1	-	3942	21	ISM	ENSMUSG00000067851.12	ENSMUST00000088615.11	6978	38	-387	35164	-387	340	5prime_fragment	FALSE	canonical	3	88	junction_18	20.6434008826065	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTGTCTAACATGTTATA	NA	False	NA	NA	False	AATATA	-15	NA	10303282	10242959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_10243210_10243418_10243578_10244291_10244421_10250050_10250203_10251094_10251267_10253887_10253973_10254200_10254407_10254610_10254723_10258981_10259184_10259451_10259561_10259663_10259904_10264481_10264717_10269067_10269202_10269953_10270130_10275032_10275135_10279649_10279927_10283268_10283449_10284349_10284497_10286061_10286219_10286753_10286785_10302595
ENSMUSG00000067851.12_53	chr1	-	3828	20	FSM	ENSMUSG00000067851.12	ENSMUST00000131556.2	3424	20	-406	2	-406	-2	multi-exon	FALSE	canonical	3	88	junction_17	20.9399616632847	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATAATGTAATGTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	10303301	10243301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_10243578_10244291_10244421_10250050_10250203_10251094_10251267_10253887_10253973_10254200_10254407_10254610_10254723_10258981_10259184_10259451_10259561_10259663_10259904_10264481_10264717_10269067_10269202_10269953_10270130_10275032_10275135_10279649_10279927_10283268_10283449_10284349_10284497_10286061_10286219_10286753_10286785_10302595
ENSMUSG00000067860.12_10	chrX	+	1751	1	Genic_Genomic	ENSMUSG00000067860.12	novel	NA	NA	NA	NA	3863	64	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTGAAATGCTTAGAGA	NA	False	NA	-2	True	AATAAA	-8	NA	57080232	57081983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_57080200_57082000
ENSMUSG00000067860.12_3	chrX	+	1946	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088629.4	1951	3	1	4	1	-4	multi-exon	FALSE	canonical	3	14	junction_2	99.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTTTGTGATTATTGTT	9868	False	NA	NA	False	NA	NA	NA	57076370	57087092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_57077598_57078721_57078886_57086537
ENSMUSG00000067860.12_4	chrX	+	3635	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088627.11	3949	3	368	-54	1	54	multi-exon	FALSE	canonical	3	194	junction_2	9.5	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCAATCTAAAATTGAAA	9868	False	NA	-12	True	NA	NA	NA	57076370	57081973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_57077598_57078721_57078886_57079729
ENSMUSG00000067860.12_5	chrX	+	4423	2	ISM	ENSMUSG00000067860.12	ENSMUST00000088627.11	3949	3	368	2	1	-2	intron_retention	FALSE	canonical	3	213	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATGTTATAACTTTTTT	9868	False	NA	10	True	AATAAA	-16	NA	57076370	57081917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_57077598_57078721
ENSMUSG00000067869.5_0	chr15	+	1247	1	FSM	ENSMUSG00000067869.5	ENSMUST00000117942.2	904	1	-61	-282	-61	282	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACACAAAAATTTTGTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	90766756	90768003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_90766800_90768000
ENSMUSG00000067870.6_0	chr15	-	427	1	FSM	ENSMUSG00000067870.6	ENSMUST00000181935.2	378	1	-16	-33	-16	33	mono-exon	FALSE	NA	NA	NA	NA	NA	1106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	90648875	90648448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_90648400_90648900
ENSMUSG00000067873.12_0	chrX	+	2851	10	FSM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	-50	9	-18	-9	multi-exon	FALSE	canonical	3	407	junction_1	40.9980427114861	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGAAATGTGGACTTGA	NA	False	NA	7	True	AATAAA	-22	NA	56098924	56112534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_56099126_56099313_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
ENSMUSG00000067873.12_31	chrX	+	1169	1	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	12391	9	12108	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGAAATGTGGACTTGA	NA	False	NA	7	True	AATAAA	-22	NA	56111365	56112534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_56111400_56112500
ENSMUSG00000067873.12_5	chrX	+	2715	9	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	274	9	-9	-9	3prime_fragment	FALSE	canonical	3	455	junction_5	31.3996417177012	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGAAATGTGGACTTGA	NA	False	NA	7	True	AATAAA	-22	NA	56099248	56112534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
ENSMUSG00000067878.14_0	chrX	-	2901	16	FSM	ENSMUSG00000067878.14	ENSMUST00000114766.8	2891	16	-16	6	-16	-6	multi-exon	FALSE	canonical	2	2	junction_7	2.18682926224756	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAACATCTCTGTTGTCT	NA	False	NA	NA	False	AGTAAA	-21	NA	55867702	55843223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_55843463_55844649_55845030_55846362_55846553_55847120_55847203_55849725_55849831_55850759_55850905_55853203_55853331_55854977_55855151_55855397_55855526_55856222_55856912_55858674_55858768_55860884_55860994_55862635_55862800_55864035_55864114_55864203_55864297_55867596
ENSMUSG00000067878.14_1	chrX	-	2571	14	ISM	ENSMUSG00000067878.14	ENSMUST00000114766.8	2891	16	8	2832	-4	-2832	5prime_fragment	FALSE	canonical	2	2	junction_5	2.32557176274323	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAACAGACACCACCTG	NA	False	NA	NA	False	NA	NA	NA	55867678	55846049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_55846553_55847120_55847203_55849725_55849831_55850759_55850905_55853203_55853331_55854977_55855151_55855397_55855526_55856222_55856912_55858674_55858768_55860884_55860994_55862635_55862800_55864035_55864114_55864203_55864297_55867596
ENSMUSG00000067889.8_0	chr19	+	8105	37	NNC	ENSMUSG00000067889.8	novel	8299	37	NA	NA	-363	-8	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_1	10.212669147246	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	5198	False	NA	5	True	ATTAAA	-15	NA	4762048	4802380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_4762341_4768846_4769026_4774107_4774260_4774657_4774832_4775928_4776021_4776167_4776249_4776609_4776726_4779089_4779203_4779329_4779518_4781301_4781420_4781953_4782113_4782415_4782719_4783681_4783836_4784066_4784938_4787369_4787508_4787838_4788596_4789134_4789338_4789618_4789710_4789880_4790028_4792360_4792625_4794075_4794301_4794493_4794584_4795136_4795398_4795485_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_10	chr19	+	3471	17	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	32923	8	2311	-8	3prime_fragment	FALSE	canonical	3	25	junction_1	6.07472993226859	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	NA	False	NA	5	True	ATTAAA	-15	NA	4794117	4802380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4794301_4794493_4794584_4795136_4795398_4795485_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_11	chr19	+	3125	15	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	34013	10	3401	-10	3prime_fragment	FALSE	canonical	3	28	junction_3	5.01222994081395	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCACTGCCTCTGGGTGTT	NA	False	NA	3	True	ATTAAA	-13	NA	4795207	4802378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4795398_4795485_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_13	chr19	+	2500	12	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	35500	8	4888	-8	3prime_fragment	FALSE	canonical	3	38	junction_11	3.69498207870938	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	NA	False	NA	5	True	ATTAAA	-15	NA	4796694	4802380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_14	chr19	+	2102	11	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	36669	8	6057	-8	3prime_fragment	FALSE	canonical	3	38	junction_10	3.76828873628335	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	NA	False	NA	5	True	ATTAAA	-15	NA	4797863	4802380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_15	chr19	+	1695	8	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	37833	8	7221	-8	3prime_fragment	FALSE	canonical	3	38	junction_7	3.91751691451488	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	NA	False	NA	5	True	ATTAAA	-15	NA	4799027	4802380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_16	chr19	+	1518	7	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	38277	8	7665	-8	3prime_fragment	FALSE	canonical	3	38	junction_6	3.39934634239519	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	NA	False	NA	5	True	ATTAAA	-15	NA	4799471	4802380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_18	chr19	+	608	1	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	40580	6	9968	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTCTGGGTGTTGTTG	NA	False	NA	7	True	ATTAAA	-17	NA	4801774	4802382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4801800_4802400
ENSMUSG00000067889.8_2	chr19	+	8072	36	NIC	ENSMUSG00000067889.8	novel	953	5	NA	NA	16	-8	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	9.77443562753035	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	NA	False	NA	5	True	ATTAAA	-15	NA	4771122	4802380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_4771561_4774107_4774260_4774657_4774832_4775928_4776021_4776167_4776249_4776609_4776726_4779089_4779203_4779329_4779518_4781301_4781420_4781953_4782113_4782415_4782719_4783681_4783836_4784066_4784938_4787369_4787508_4787838_4788596_4789134_4789338_4789618_4789710_4789880_4790028_4792360_4792625_4794075_4794301_4794493_4794584_4795136_4795398_4795485_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_23	chr19	+	3715	18	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	31230	6	618	-6	3prime_fragment	FALSE	canonical	3	25	junction_2	5.91578733495276	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTCTGGGTGTTGTTG	NA	False	NA	7	True	ATTAAA	-17	NA	4792424	4802382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4792625_4794075_4794301_4794493_4794584_4795136_4795398_4795485_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_25	chr19	+	2932	14	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	34289	15	3677	-15	3prime_fragment	FALSE	canonical	3	28	junction_2	4.98637196019749	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTCTCACTGCCTCTGG	NA	False	NA	-2	True	ATTAAA	-8	NA	4795483	4802373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_4	chr19	+	7381	34	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	13564	8	3652	-8	3prime_fragment	FALSE	canonical	3	12	junction_8	9.50858681090391	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	NA	False	NA	5	True	ATTAAA	-15	NA	4774758	4802380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4774832_4775928_4776021_4776167_4776249_4776609_4776726_4779089_4779203_4779329_4779518_4781301_4781420_4781953_4782113_4782415_4782719_4783681_4783836_4784066_4784938_4787369_4787508_4787838_4788596_4789134_4789338_4789618_4789710_4789880_4790028_4792360_4792625_4794075_4794301_4794493_4794584_4795136_4795398_4795485_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_6	chr19	+	5782	24	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	23074	8	-7538	-8	3prime_fragment	FALSE	canonical	3	16	junction_1	7.78637266279083	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	NA	False	NA	5	True	ATTAAA	-15	NA	4784268	4802380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4784938_4787369_4787508_4787838_4788596_4789134_4789338_4789618_4789710_4789880_4790028_4792360_4792625_4794075_4794301_4794493_4794584_4795136_4795398_4795485_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_7	chr19	+	5115	23	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	26173	8	-4439	-8	3prime_fragment	FALSE	canonical	3	24	junction_5	6.62389862979886	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	NA	False	NA	5	True	ATTAAA	-15	NA	4787367	4802380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4787508_4787838_4788596_4789134_4789338_4789618_4789710_4789880_4790028_4792360_4792625_4794075_4794301_4794493_4794584_4795136_4795398_4795485_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067889.8_8	chr19	+	4739	22	ISM	ENSMUSG00000067889.8	ENSMUST00000008991.8	8299	37	26880	8	-3732	-8	3prime_fragment	FALSE	canonical	3	24	junction_4	6.58728246315832	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTCTGGGTGTTGT	NA	False	NA	5	True	ATTAAA	-15	NA	4788074	4802380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_4788596_4789134_4789338_4789618_4789710_4789880_4790028_4792360_4792625_4794075_4794301_4794493_4794584_4795136_4795398_4795485_4795617_4795807_4796013_4796593_4796969_4797739_4797985_4798086_4798226_4798621_4798707_4798965_4799163_4799429_4799573_4799661_4799738_4799810_4799862_4800048_4800270_4800508_4800683_4801176_4801220_4801528
ENSMUSG00000067916.10_16	chr4	+	3805	5	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1815	1176	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	34.022051672408	33	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAATTATGTCCATCCG	2767	False	NA	NA	False	NA	NA	NA	147233135	147266212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_147233279_147249797_147249844_147260303_147260362_147261203_147261331_147262781
ENSMUSG00000067916.10_17	chr4	+	3831	5	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1817	1177	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	35.8503835404867	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAATTATGTCCATCCGC	2765	False	NA	NA	False	NA	NA	NA	147233133	147266213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_147233279_147249797_147249867_147260303_147260362_147261203_147261331_147262781
ENSMUSG00000067916.10_26	chr4	+	4554	2	NIC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	24084	3	intron_retention	FALSE	canonical	3	89	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTCAAATGAGCCAATTGA	NA	False	NA	NA	False	AATAAA	-23	NA	147259034	147265039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_147261331_147262781
ENSMUSG00000067916.10_27	chr4	+	4631	3	ISM	ENSMUSG00000067916.10	ENSMUST00000084149.10	2813	7	42789	-1171	24333	1171	3prime_fragment	FALSE	canonical	1	2	junction_1	43.5	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCTATGCAATTATGTCC	NA	False	NA	NA	False	NA	NA	NA	147259283	147266207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_147260362_147261203_147261331_147262781
ENSMUSG00000067916.10_28	chr4	+	2433	1	Genic_Genomic	ENSMUSG00000067916.10	novel	NA	NA	NA	NA	28830	1177	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAATTATGTCCATCCGC	NA	False	NA	NA	False	NA	NA	NA	147263780	147266213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_147263800_147266200
ENSMUSG00000067916.10_34	chr4	+	5468	3	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-4	-36718	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	108	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATGGAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	147216490	147224511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_147216647_147219028_147219975_147220145
ENSMUSG00000067919.9_116	chr4	+	1000	1	ISM	ENSMUSG00000067919.9	ENSMUST00000075775.6	3993	5	37939	6	37911	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	147144245	147145245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_147144200_147145200
ENSMUSG00000067919.9_6	chr4	+	3831	9	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-30	-6	multi-exon	TRUE	non_canonical	0	0	junction_6	233.787296489779	25	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	147056402	147145245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_147056575_147058404_147058498_147115003_147115080_147136962_147137048_147140055_147140183_147141715_147142355_147142438_147143583_147143666_147143764_147143847
ENSMUSG00000067924.5_0	chrX	-	1247	1	FSM	ENSMUSG00000067924.5	ENSMUST00000088778.5	1232	1	-12	-3	-12	3	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGAAATGGAGTCTTAC	NA	False	NA	NA	False	AATAAA	-16	NA	52672387	52671140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_52671100_52672400
ENSMUSG00000067925.5_0	chrX	-	1241	1	FSM	ENSMUSG00000067925.5	ENSMUST00000088779.5	1195	1	-55	9	-55	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGAAATGGAGTCTTAC	NA	False	NA	NA	False	AATAAA	-16	NA	52645704	52644463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_52644500_52645700
ENSMUSG00000067928.7_0	chr17	+	4238	6	FSM	ENSMUSG00000067928.7	ENSMUST00000073312.7	4209	6	-36	7	-36	-7	multi-exon	FALSE	canonical	3	33	junction_5	11.689311356962	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTTTTATGTGGAAATT	NA	False	NA	2	True	AATAAA	-17	NA	21926686	21944610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21926876_21927591_21927704_21928185_21928278_21938027_21938104_21939924_21940052_21940968
ENSMUSG00000067928.7_1	chr17	+	5162	5	ISM	ENSMUSG00000067928.7	ENSMUST00000073312.7	4209	6	-43	7	-43	-7	intron_retention	FALSE	canonical	3	47	junction_2	7.1239034243875	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTTTTATGTGGAAATT	NA	False	NA	2	True	AATAAA	-17	NA	21926679	21944610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_21926876_21927591_21927704_21928185_21928278_21938027_21938104_21939924
ENSMUSG00000067928.7_13	chr17	+	2569	1	ISM	ENSMUSG00000067928.7	ENSMUST00000073312.7	4209	6	15319	7	15319	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTTTTATGTGGAAATT	NA	False	NA	2	True	AATAAA	-17	NA	21942041	21944610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_21942000_21944600
ENSMUSG00000067931.7_0	chr17	+	2535	7	NNC	ENSMUSG00000067931.7	novel	2652	6	NA	NA	15	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	39.6880194629171	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGCATGGAAAGATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	21787284	21808958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966_21807278_21807376
ENSMUSG00000067931.7_1	chr17	+	2641	6	FSM	ENSMUSG00000067931.7	ENSMUST00000088787.7	2652	6	8	3	8	-3	multi-exon	FALSE	canonical	3	80	junction_2	15.6025638918737	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGCATGGAAAGATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	21787277	21808958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966
ENSMUSG00000067931.7_23	chr17	+	5149	4	ISM	ENSMUSG00000067931.7	ENSMUST00000088787.7	2652	6	4033	2	4033	-2	3prime_fragment	FALSE	canonical	3	87	junction_1	15.7691682300198	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGCATGGAAAGATTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	21791302	21808959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_21794219_21803291_21803405_21805041_21805169_21806966
ENSMUSG00000067931.7_3	chr17	+	2669	6	NNC	ENSMUSG00000067931.7	novel	2652	6	NA	NA	8	-8	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	38.4010416525385	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTAACTGCATGGAAAG	NA	False	NA	NA	False	AATAAA	-9	NA	21787277	21808953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_21787508_21789277_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966
ENSMUSG00000067942.7_0	chr17	+	2011	5	NIC	ENSMUSG00000067942.7	novel	2087	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_4	20.5836707124847	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGCACATAAGTTCTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	21229212	21263306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_21229249_21231937_21232035_21240333_21240461_21240967_21241097_21261684
ENSMUSG00000067942.7_1	chr17	+	3773	5	FSM	ENSMUSG00000067942.7	ENSMUST00000088811.7	3800	5	18	9	2	-9	multi-exon	FALSE	canonical	3	20	junction_1	17.6405073623181	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGAATTTGTTTTTCT	NA	False	NA	4	True	AGTAAA	-15	NA	21229220	21249114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21229249_21231937_21232035_21240333_21240461_21240967_21241097_21245722
ENSMUSG00000067942.7_11	chr17	+	3746	4	ISM	ENSMUSG00000067942.7	ENSMUST00000088811.7	3800	5	2734	9	2631	-9	3prime_fragment	FALSE	canonical	3	24	junction_3	16.3367343397905	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGAATTTGTTTTTCT	NA	False	NA	4	True	AGTAAA	-15	NA	21231936	21249114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_21232035_21240333_21240461_21240967_21241097_21245722
ENSMUSG00000067942.7_2	chr17	+	3871	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232354.2	1041	5	32	-2862	-16	-9	multi-exon	FALSE	canonical	3	24	junction_4	15.2807067899361	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGAATTTGTTTTTCT	NA	False	NA	4	True	AGTAAA	-15	NA	21229244	21249114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21229371_21231937_21232035_21240333_21240461_21240967_21241097_21245722
ENSMUSG00000067942.7_5	chr17	+	2100	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232663.2	552	5	-61	-1487	-16	-1	multi-exon	FALSE	canonical	2	12	junction_4	19.0394327646598	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATGCACATAAGTTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	21229244	21263305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_21229371_21231937_21232035_21240333_21240461_21240967_21241097_21261684
ENSMUSG00000067942.7_7	chr17	+	2497	1	ISM	ENSMUSG00000067942.7	ENSMUST00000088811.7	3800	5	17417	7	17314	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATTTGTTTTTCTTT	NA	False	NA	6	True	AGTAAA	-17	NA	21246619	21249116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_21246600_21249100
ENSMUSG00000067942.7_8	chr17	+	3788	5	NIC	ENSMUSG00000067942.7	novel	3800	5	NA	NA	-2	-9	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	22.6439837484485	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGAATTTGTTTTTCT	NA	False	NA	4	True	AGTAAA	-15	NA	21229210	21249114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_21229249_21231937_21232040_21240333_21240461_21240967_21241097_21245722
ENSMUSG00000067995.5_0	chr14	-	1508	8	FSM	ENSMUSG00000067995.5	ENSMUST00000088922.5	1467	8	-41	0	-41	0	multi-exon	FALSE	canonical	3	468	junction_6	43.0538343595692	350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGATGGCAACTGTTATC	NA	False	NA	-17	True	AATAAA	-19	NA	76248346	76134376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76234348_76234368_76245144_76245219_76248119
ENSMUSG00000068014.6_0	chrX	+	521	1	FSM	ENSMUSG00000068014.6	ENSMUST00000119328.2	483	1	-7	-31	-7	31	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	AATAAA	-14	NA	46989214	46989735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_46989200_46989700
ENSMUSG00000068015.9_0	chr14	-	3203	19	FSM	ENSMUSG00000068015.9	ENSMUST00000228252.2	3125	19	5	-83	5	37	multi-exon	FALSE	canonical	3	67	junction_17	17.7194355175815	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTTTTTTTTTCTGGAT	574	False	NA	NA	False	ATTAAA	-18	NA	75185311	74993529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
ENSMUSG00000068015.9_28	chr14	-	4053	19	NIC	ENSMUSG00000068015.9	novel	2678	10	NA	NA	5	-21	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	27.4246442294355	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATCCAAGCTTTTTATT	574	False	NA	NA	False	AATAAA	-13	NA	75185311	75000783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_75002688_75013020_75013099_75022930_75023069_75023720_75023831_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
ENSMUSG00000068015.9_8	chr14	-	3277	20	FSM	ENSMUSG00000068015.9	ENSMUST00000088970.7	4694	20	2	1415	2	37	multi-exon	FALSE	canonical	3	34	junction_4	23.7891243570067	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTTTTTTTTTCTGGAT	581	False	NA	NA	False	ATTAAA	-18	NA	75185304	74993529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032350_75032432_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
ENSMUSG00000068036.17_1	chr17	+	7340	32	NIC	ENSMUSG00000068036.17	novel	5418	32	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	133	junction_20	63.9601365185812	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTGTCCCTTGGTTG	NA	False	NA	26	True	ATTAAA	-15	NA	13980803	14126056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_13981041_14024200_14024397_14027538_14027655_14029193_14029358_14030671_14030833_14038382_14038541_14042527_14042640_14043552_14043721_14049190_14049286_14050131_14050395_14052629_14052700_14055499_14055619_14066533_14066596_14066695_14066902_14069369_14069516_14069829_14069925_14071041_14071308_14072577_14072722_14075475_14075675_14080134_14080239_14082030_14082118_14101546_14101613_14102112_14102187_14102644_14102764_14104002_14104198_14104830_14104923_14105583_14105770_14108243_14109240_14116349_14116485_14119206_14119490_14122791_14122877_14124115
ENSMUSG00000068036.17_10	chr17	+	7336	32	NIC	ENSMUSG00000068036.17	novel	5418	32	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	1	133	junction_20	70.780765419582	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTTGTCCCTTGGTT	NA	False	NA	25	True	ATTAAA	-14	NA	13980803	14126055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_13981041_14024200_14024397_14027538_14027655_14029196_14029358_14030671_14030833_14038382_14038541_14042527_14042640_14043552_14043721_14049190_14049286_14050131_14050395_14052629_14052700_14055499_14055619_14066533_14066596_14066695_14066902_14069369_14069516_14069829_14069925_14071041_14071308_14072577_14072722_14075475_14075675_14080134_14080239_14082030_14082118_14101546_14101613_14102112_14102187_14102644_14102764_14104002_14104198_14104830_14104923_14105583_14105770_14108243_14109240_14116349_14116485_14119206_14119490_14122791_14122877_14124115
ENSMUSG00000068036.17_132	chr17	+	2999	5	ISM	ENSMUSG00000068036.17	ENSMUST00000170827.9	7338	33	127878	4	-111	-4	3prime_fragment	FALSE	canonical	3	370	junction_3	17.1518949390439	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCTTCCTTTGTCCCTTG	NA	False	NA	22	True	ATTAAA	-11	NA	14108680	14126052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_14109240_14116349_14116485_14119206_14119490_14122791_14122877_14124115
ENSMUSG00000068036.17_140	chr17	+	1740	1	ISM	ENSMUSG00000068036.17	ENSMUST00000170827.9	7338	33	143514	0	5231	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTGTCCCTTGGTTG	NA	False	NA	26	True	ATTAAA	-15	NA	14124316	14126056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_14124300_14126100
ENSMUSG00000068036.17_4	chr17	+	7337	32	FSM	ENSMUSG00000068036.17	ENSMUST00000150848.8	5418	32	-132	-1787	1	0	multi-exon	FALSE	canonical	1	133	junction_20	64.7559574638129	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTGTCCCTTGGTTG	NA	False	NA	26	True	ATTAAA	-15	NA	13980803	14126056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_13981041_14024200_14024397_14027541_14027655_14029193_14029358_14030671_14030833_14038382_14038541_14042527_14042640_14043552_14043721_14049190_14049286_14050131_14050395_14052629_14052700_14055499_14055619_14066533_14066596_14066695_14066902_14069369_14069516_14069829_14069925_14071041_14071308_14072577_14072722_14075475_14075675_14080134_14080239_14082030_14082118_14101546_14101613_14102112_14102187_14102644_14102764_14104002_14104198_14104830_14104923_14105583_14105770_14108243_14109240_14116349_14116485_14119206_14119490_14122791_14122877_14124115
ENSMUSG00000068036.17_5	chr17	+	7330	32	NIC	ENSMUSG00000068036.17	novel	5418	32	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	1	133	junction_20	71.4884853524067	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCTTCCTTTGTCCCTTG	NA	False	NA	22	True	ATTAAA	-11	NA	13980803	14126052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_13981041_14024200_14024397_14027541_14027655_14029196_14029358_14030671_14030833_14038382_14038541_14042527_14042640_14043552_14043721_14049190_14049286_14050131_14050395_14052629_14052700_14055499_14055619_14066533_14066596_14066695_14066902_14069369_14069516_14069829_14069925_14071041_14071308_14072577_14072722_14075475_14075675_14080134_14080239_14082030_14082118_14101546_14101613_14102112_14102187_14102644_14102764_14104002_14104198_14104830_14104923_14105583_14105770_14108243_14109240_14116349_14116485_14119206_14119490_14122791_14122877_14124115
ENSMUSG00000068039.14_0	chr17	+	1873	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	62	511	2	0	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	4010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	-1	True	ATTAAA	-14	NA	13135330	13143443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000068039.14_3	chr17	+	1787	11	FSM	ENSMUSG00000068039.14	ENSMUST00000089024.13	1902	11	115	0	2	0	multi-exon	FALSE	canonical	3	149	junction_1	1038.79458989735	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	-1	True	ATTAAA	-14	NA	13135330	13143443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_13135517_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000068040.11_0	chr2	+	3647	18	FSM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	241	8	3	-8	multi-exon	FALSE	canonical	3	350	junction_1	53.5920770883495	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCGAATGCAAGGGTGCG	NA	False	NA	33	True	AATAAA	-22	NA	153003463	153052378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
ENSMUSG00000068040.11_42	chr2	+	3618	17	ISM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	17585	10	-11511	-10	3prime_fragment	FALSE	canonical	3	460	junction_5	37.7110208526632	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTCGAATGCAAGGGTG	6201	False	NA	31	True	AATAAA	-20	NA	153020807	153052376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
ENSMUSG00000068040.11_5	chr2	+	3648	18	NIC	ENSMUSG00000068040.11	novel	3896	18	NA	NA	-2	-8	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	123.527310906505	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCGAATGCAAGGGTGCG	NA	False	NA	33	True	AATAAA	-22	NA	153003465	153052378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_153003492_153020805_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
ENSMUSG00000068048.9_0	chrX	-	842	4	FSM	ENSMUSG00000068048.9	ENSMUST00000089062.8	882	4	38	2	-28	-2	multi-exon	FALSE	canonical	3	53	junction_2	21.013223349966	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGTTGGCTCCATTATC	1116	False	NA	-3	True	AATAAA	-14	NA	36990609	36987975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36988177_36989156_36989203_36989828_36990289_36990474
ENSMUSG00000068079.6_0	chr2	+	977	2	FSM	ENSMUSG00000068079.6	ENSMUST00000089112.6	980	2	-4	7	-4	-7	multi-exon	FALSE	canonical	3	131	junction_1	0	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAATGGTGTGTATCCT	7085	False	NA	NA	False	AATAAA	-10	NA	151985476	151991010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_151986059_151990615
ENSMUSG00000068099.6_0	chr15	+	2070	2	FSM	ENSMUSG00000068099.6	ENSMUST00000143238.2	1552	2	-526	8	-526	7	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCAGACTCCTACGGTTG	NA	False	NA	9	True	AATAAA	-21	NA	82139697	82144946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82140587_82143765
ENSMUSG00000068101.12_2	chr15	-	873	6	NIC	ENSMUSG00000068101.12	novel	1202	6	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	3	45	junction_5	488.753271088798	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGGAAATGTGTTGTA	NA	False	NA	-25	True	AAAAAG	-6	NA	82128610	82118287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128505
ENSMUSG00000068101.12_3	chr15	-	771	5	FSM	ENSMUSG00000068101.12	ENSMUST00000089155.6	789	5	-9	27	-9	-27	multi-exon	FALSE	canonical	3	56	junction_1	529.66121247454	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGGA	NA	False	NA	-44	True	NA	NA	NA	82128937	82118306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_82118711_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ENSMUSG00000068101.12_4	chr15	-	858	6	FSM	ENSMUSG00000068101.12	ENSMUST00000089157.11	1202	6	17	327	-4	-27	multi-exon	FALSE	canonical	3	1067	junction_2	108.849253557386	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGGA	NA	False	NA	-44	True	NA	NA	NA	82128932	82118306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ENSMUSG00000068101.12_5	chr15	-	947	5	FSM	ENSMUSG00000068101.12	ENSMUST00000230408.2	593	5	0	-354	0	-27	multi-exon	FALSE	canonical	3	1067	junction_2	109.17045158833	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGGA	NA	False	NA	-44	True	NA	NA	NA	82128611	82118306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333
ENSMUSG00000068105.12_0	chr15	-	1924	3	FSM	ENSMUSG00000068105.12	ENSMUST00000089161.10	1924	3	-5	5	-5	-3	multi-exon	FALSE	canonical	3	7	junction_1	3	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTACTCTGTGCCTGGGTG	NA	False	NA	NA	False	AATAAA	-20	NA	82108559	82105948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_82107478_82107919_82108124_82108368
ENSMUSG00000068114.8_0	chr15	+	2033	7	FSM	ENSMUSG00000068114.8	ENSMUST00000089174.6	2046	7	10	3	5	0	multi-exon	FALSE	canonical	3	36	junction_2	6.64371047599825	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTATGTCTTTGGCTTCT	NA	False	NA	22	True	AATAAA	-33	NA	82012132	82026401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82012251_82014252_82014372_82015624_82015747_82015945_82016031_82018781_82018964_82019270_82019343_82025066
ENSMUSG00000068114.8_1	chr15	+	4975	5	FSM	ENSMUSG00000068114.8	ENSMUST00000229456.2	4919	5	-65	9	4	-8	multi-exon	FALSE	canonical	3	36	junction_2	6.75925291729789	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGCTCTAAACTATGTCT	NA	False	NA	13	True	AATAAA	-24	NA	82012131	82026392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_82012251_82014252_82014372_82015624_82018964_82019270_82019343_82025066
ENSMUSG00000068114.8_10	chr15	+	906	1	ISM	ENSMUSG00000068114.8	ENSMUST00000089174.6	2046	7	13373	3	11240	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTATGTCTTTGGCTTCT	2536	False	NA	22	True	AATAAA	-33	NA	82025495	82026401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_82025500_82026400
ENSMUSG00000068114.8_2	chr15	+	2039	7	NIC	ENSMUSG00000068114.8	novel	2046	7	NA	NA	-2	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	17.2666988416689	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGCTCTAAACTATGTCT	NA	False	NA	13	True	AATAAA	-24	NA	82012125	82026392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_82012251_82014252_82014372_82015616_82015747_82015945_82016031_82018781_82018964_82019270_82019343_82025066
ENSMUSG00000068114.8_5	chr15	+	2215	6	NIC	ENSMUSG00000068114.8	novel	2046	7	NA	NA	4	-17	intron_retention	FALSE	canonical	3	36	junction_2	6.62117814289874	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCTCTGACAAGCTCTAA	NA	False	NA	4	True	AATAAA	-15	NA	82012131	82026383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_82012251_82014252_82014372_82015624_82016031_82018781_82018964_82019270_82019343_82025066
ENSMUSG00000068115.14_0	chr2	-	5065	24	FSM	ENSMUSG00000068115.14	ENSMUST00000109896.8	5093	24	24	4	2	-4	multi-exon	FALSE	canonical	3	41	junction_10	8.5081968705865	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTTTTTTAAAGTTTTA	7587	False	NA	-2	True	ATTAAA	-14	NA	150851294	150776442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_150777360_150778866_150778981_150779473_150779642_150781772_150781887_150782591_150782751_150786500_150786571_150787003_150787109_150791258_150792300_150794404_150794713_150795225_150795333_150797491_150797625_150800475_150800557_150800670_150800782_150801687_150801863_150805274_150805416_150806053_150806191_150807997_150808163_150811899_150812053_150812943_150813135_150816023_150816091_150817709_150817883_150821352_150821450_150821917_150822112_150851150
ENSMUSG00000068115.14_17	chr2	-	2211	8	ISM	ENSMUSG00000068115.14	ENSMUST00000109896.8	5093	24	59493	7	2887	-7	3prime_fragment	FALSE	canonical	3	46	junction_7	7.72221814385119	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATAAGTTTTTTAAAGTT	NA	False	NA	-5	True	ATTAAA	-11	NA	150791825	150776445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_150777360_150778866_150778981_150779473_150779642_150781772_150781887_150782591_150782751_150786500_150786571_150787003_150787109_150791258
ENSMUSG00000068115.14_29	chr2	-	2532	13	ISM	ENSMUSG00000068115.14	ENSMUST00000109896.8	5093	24	19	23339	-3	701	5prime_fragment	FALSE	canonical	3	46	junction_10	8.16836716989523	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGACACCCTCTTCTGG	7582	False	NA	NA	False	NA	NA	NA	150851299	150799777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_150800557_150800670_150800782_150801687_150801863_150805274_150805416_150806053_150806191_150807997_150808163_150811899_150812053_150812943_150813135_150816023_150816091_150817709_150817883_150821352_150821450_150821917_150822112_150851150
ENSMUSG00000068120.5_0	chr17	-	643	1	FSM	ENSMUSG00000068120.5	ENSMUST00000181584.2	441	1	-59	-143	-59	143	mono-exon	FALSE	NA	NA	NA	NA	NA	391	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAGATGAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-10	NA	5866974	5866331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_5866300_5867000
ENSMUSG00000068130.12_0	chr2	-	6393	4	FSM	ENSMUSG00000068130.12	ENSMUST00000109916.8	2922	4	2	-3473	2	3473	multi-exon	FALSE	canonical	2	6	junction_3	3.29983164553722	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTATGTGTCGTCTTAGTA	NA	False	NA	NA	False	NA	NA	NA	150293404	150245587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_150251710_150252860_150252922_150253130_150253258_150293321
ENSMUSG00000068134.14_0	chr2	-	4030	4	FSM	ENSMUSG00000068134.14	ENSMUST00000089207.13	4127	4	35	62	5	-62	multi-exon	FALSE	canonical	3	35	junction_1	10.2089285540757	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGCTGTCTCCGAGCACA	NA	False	NA	-61	True	AATAAA	-30	NA	149978593	149956387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_149960121_149961484_149961549_149961744_149961872_149978487
ENSMUSG00000068134.14_2	chr2	-	4179	4	FSM	ENSMUSG00000068134.14	ENSMUST00000122859.8	4181	4	1	1	1	-1	multi-exon	FALSE	canonical	2	3	junction_1	24.3903441732356	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTGCCTGAGACTCTTC	NA	False	NA	0	True	NA	NA	NA	149978597	149956326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_149960121_149961400_149961549_149961744_149961872_149978487
ENSMUSG00000068134.14_3	chr2	-	3951	3	FSM	ENSMUSG00000068134.14	ENSMUST00000109931.8	4033	3	11	71	-11	-71	multi-exon	FALSE	canonical	3	13	junction_1	23.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACCTTCAAGCTGTCT	NA	False	NA	-70	True	AATAAA	-21	NA	149978587	149956396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_149960121_149961744_149961872_149978487
ENSMUSG00000068134.14_4	chr2	-	3640	3	FSM	ENSMUSG00000068134.14	ENSMUST00000142792.2	529	3	-23	-3088	-1	928	multi-exon	FALSE	canonical	3	47	junction_1	6.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTGATAACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149978599	149958147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_149961549_149961744_149961872_149978487
ENSMUSG00000068134.14_5	chr2	-	2331	1	ISM	ENSMUSG00000068134.14	ENSMUST00000122859.8	4181	4	19939	3	19903	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCTTTGCCTGAGACTCT	NA	False	NA	-2	True	NA	NA	NA	149958659	149956328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_149956300_149958700
ENSMUSG00000068134.14_6	chr2	-	1020	1	Genic_Genomic	ENSMUSG00000068134.14	novel	NA	NA	NA	NA	21218	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCCTGAGACTCTTCAT	NA	False	NA	2	True	NA	NA	NA	149957344	149956324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_149956300_149957300
ENSMUSG00000068141.6_1	chr17	-	845	1	FSM	ENSMUSG00000068141.6	ENSMUST00000089221.3	720	1	-10	-115	-10	115	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTAGTGATACAGTAAAAA	NA	False	NA	NA	False	AATAAA	-3	NA	3095018	3094173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_3094200_3095000
ENSMUSG00000068154.6_0	chr2	+	2276	1	FSM	ENSMUSG00000068154.6	ENSMUST00000089257.6	3100	1	181	643	181	-643	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTGCTTAAAAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	146064021	146066297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_146064000_146066300
ENSMUSG00000068165.4_0	chr14	+	1062	1	FSM	ENSMUSG00000068165.4	ENSMUST00000089275.4	628	1	-100	-334	-100	334	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCCCTGTTTTCCAAAT	1334	False	NA	NA	False	TTTAAA	-17	NA	66282428	66283490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_66282400_66283500
ENSMUSG00000068184.8_0	chr13	-	602	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	-10	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	252.741345054583	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGATCCCTTCGTATTTC	NA	False	NA	-7	True	AATAAA	-9	NA	108295135	108189128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_108189199_108189246_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_4	chr13	-	623	4	FSM	ENSMUSG00000068184.8	ENSMUST00000163558.3	678	4	34	21	2	-21	multi-exon	FALSE	canonical	3	548	junction_2	39.4151691047439	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAGGTTAAAAGTCG	NA	False	NA	-22	True	NA	NA	NA	108295123	108189143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068205.15_0	chr2	+	1060	4	FSM	ENSMUSG00000068205.15	ENSMUST00000043836.8	3552	4	26	2466	1	-7	multi-exon	FALSE	canonical	3	66	junction_3	7.40870359029762	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGTATGATTCCTGT	NA	False	NA	NA	False	AATAAA	-10	NA	140237380	140262408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_140237642_140242781_140242899_140260736_140260835_140261824
ENSMUSG00000068206.14_2	chr15	+	1824	13	FSM	ENSMUSG00000068206.14	ENSMUST00000163571.8	2054	13	206	24	-3	-6	multi-exon	FALSE	canonical	3	17	junction_1	62.6245425798331	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAATGCATGGGCTCCTT	4380	False	NA	12	True	AATAAA	-12	NA	79113578	79133660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79113621_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
ENSMUSG00000068206.14_5	chr15	+	1946	13	FSM	ENSMUSG00000068206.14	ENSMUST00000018295.14	1977	13	27	4	-2	-4	multi-exon	FALSE	canonical	3	173	junction_9	26.1878894826512	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCATGGGCTCCTTGC	4410	False	NA	14	True	AATAAA	-14	NA	79113608	79133662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
ENSMUSG00000068206.14_8	chr15	+	3411	11	NIC	ENSMUSG00000068206.14	novel	1977	13	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	173	junction_8	27.9730227183263	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGGCTCCTTGCAA	4408	False	NA	16	True	AATAAA	-16	NA	79113606	79133664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79130312_79130607_79130701_79131464_79132497_79132920
ENSMUSG00000068206.14_9	chr15	+	2790	12	NIC	ENSMUSG00000068206.14	novel	1977	13	NA	NA	-10	-4	intron_retention	FALSE	canonical	3	173	junction_9	26.6780623034069	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCATGGGCTCCTTGC	4402	False	NA	14	True	AATAAA	-14	NA	79113600	79133662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79132497_79132920
ENSMUSG00000068220.7_1	chr15	+	526	4	FSM	ENSMUSG00000068220.7	ENSMUST00000089377.6	800	4	3	271	2	3	multi-exon	FALSE	canonical	3	1912	junction_2	63.4367576584918	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCAGCCCTTTCATGGGA	NA	False	NA	12	True	AATAAA	-23	NA	78810927	78814394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78811005_78812169_78812250_78813832_78814005_78814197
ENSMUSG00000068240.6_0	chr4	-	478	1	FSM	ENSMUSG00000068240.6	ENSMUST00000089430.6	504	1	0	26	0	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	277	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6	True	NA	NA	False	AATAAA	-15	NA	3973595	3973117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_3973100_3973600
ENSMUSG00000068245.15_0	chr14	-	1328	11	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5081	-7	at_least_one_novel_splicesite	FALSE	canonical	3	278	junction_1	39.5924235176378	105	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCACTGAAGTGTGCAC	NA	False	NA	-8	True	AATAAA	-9	NA	59608000	59586187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068245.15_3	chr14	-	1494	10	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5077	-7	intron_retention	FALSE	canonical	3	300	junction_3	34.2669260690571	89	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCACTGAAGTGTGCAC	NA	False	NA	-8	True	AATAAA	-9	NA	59607996	59586187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068250.14_0	chr6	-	587	4	FSM	ENSMUSG00000068250.14	ENSMUST00000127743.8	3273	4	2376	310	2376	0	multi-exon	FALSE	canonical	3	90	junction_3	10.4029910228848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTCCCATATTTATTTG	NA	False	NA	0	True	TATAAA	-30	NA	149072493	149059074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330
ENSMUSG00000068250.14_1	chr6	-	999	7	FSM	ENSMUSG00000068250.14	ENSMUST00000111535.8	1457	7	19	439	2	-3	multi-exon	FALSE	canonical	3	74	junction_5	14.7723465374402	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTTCTATTGTCCCAT	NA	False	NA	-9	True	TATAAA	-21	NA	149090191	149059083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149090103
ENSMUSG00000068250.14_2	chr6	-	716	5	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	42.3932482831877	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTATTGTCCCATATTT	NA	False	NA	-5	True	TATAAA	-25	NA	149090182	149059079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149090103
ENSMUSG00000068250.14_3	chr6	-	3549	6	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	2	0	intron_retention	FALSE	canonical	3	74	junction_4	12.6237870704476	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCTATTGTCCCATATT	NA	False	NA	-6	True	TATAAA	-24	NA	149090208	149059080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_149059330_149068303_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149090103
ENSMUSG00000068250.14_8	chr6	-	1120	7	NIC	ENSMUSG00000068250.14	novel	1369	7	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	33.0840680019183	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTTCTATTGTCCCAT	NA	False	NA	-9	True	TATAAA	-21	NA	149090178	149059083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149089969
ENSMUSG00000068262.5_0	chr6	-	99	1	FSM	ENSMUSG00000068262.5	ENSMUST00000089501.5	1209	1	1166	-56	1166	56	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAACAAAAAAAAAAAAAAAA	3266	False	NA	NA	False	AATAAA	-11	NA	87742020	87741921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_87741900_87742000
ENSMUSG00000068264.12_0	chr2	+	3128	1	Genic_Genomic	ENSMUSG00000068264.12	novel	NA	NA	NA	NA	-12	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTTGTCCTCTTTTTGTG	NA	False	NA	9	True	ATTAAA	-15	NA	131052304	131055432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_131052300_131055400
ENSMUSG00000068264.12_1	chr2	+	1581	3	FSM	ENSMUSG00000068264.12	ENSMUST00000110208.8	1521	3	-62	2	8	1	multi-exon	FALSE	canonical	3	39	junction_2	10	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTTGTCCTCTTTTTGTG	NA	False	NA	9	True	ATTAAA	-15	NA	131052297	131055432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131052602_131053182_131053394_131054366
ENSMUSG00000068264.12_2	chr2	+	1371	2	FSM	ENSMUSG00000068264.12	ENSMUST00000134086.2	868	2	8	-511	8	-1	multi-exon	FALSE	canonical	3	35	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGTCCTCTTTTTGTGC	NA	False	NA	10	True	ATTAAA	-16	NA	131052297	131055433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131052602_131054366
ENSMUSG00000068264.12_4	chr2	+	1553	3	FSM	ENSMUSG00000068264.12	ENSMUST00000110206.2	703	3	-203	-647	4	0	multi-exon	FALSE	canonical	0	0	junction_2	29.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTTGTCCTCTTTTTGT	NA	False	NA	8	True	ATTAAA	-14	NA	131052320	131055431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131052602_131053182_131053394_131054370
ENSMUSG00000068264.12_5	chr2	+	2153	2	NIC	ENSMUSG00000068264.12	novel	1521	3	NA	NA	-9	-1	intron_retention	FALSE	canonical	3	39	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGTCCTCTTTTTGTGC	NA	False	NA	10	True	ATTAAA	-16	NA	131052307	131055433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_131053394_131054366
ENSMUSG00000068267.6_0	chr2	-	2755	1	FSM	ENSMUSG00000068267.6	ENSMUST00000089510.5	4886	1	18	2113	18	-2113	mono-exon	FALSE	NA	NA	NA	NA	NA	315	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAAGGATGCATCCTTCA	3184	False	NA	-6	True	AATAAA	-39	NA	131021969	131019214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_131019200_131022000
ENSMUSG00000068270.16_0	chrX	+	8262	9	FSM	ENSMUSG00000068270.16	ENSMUST00000103005.10	4839	9	186	-3609	186	-2	multi-exon	FALSE	canonical	2	6	junction_3	2.54644359843292	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGGACTCGTCTCTGA	NA	False	NA	NA	False	AATAAA	-12	NA	6312093	6549500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_6312316_6432846_6432999_6492882_6493018_6495245_6497710_6503009_6503072_6535713_6536491_6541154_6541336_6544276_6544547_6545501
ENSMUSG00000068270.16_4	chrX	+	2467	1	ISM	ENSMUSG00000068270.16	ENSMUST00000089520.3	8201	8	57695	1	57695	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGGACTCGTCTCTGAT	NA	False	NA	NA	False	AATAAA	-13	NA	6547034	6549501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_6547000_6549500
ENSMUSG00000068284.15_1	chr16	+	8107	7	FSM	ENSMUSG00000068284.15	ENSMUST00000119746.8	12708	7	-3	4604	-3	-4602	multi-exon	FALSE	canonical	3	10	junction_6	17.7709188157381	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACATTATTGTCCTTC	NA	False	NA	NA	False	ATTAAA	-12	NA	43993605	44043224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_43993874_44019266_44019385_44020976_44021042_44022100_44022130_44025360_44025444_44033002_44033100_44035777
ENSMUSG00000068284.15_10	chr16	+	7982	6	NIC	ENSMUSG00000068284.15	novel	12708	7	NA	NA	4	-4602	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	24.5063257139866	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACATTATTGTCCTTC	NA	False	NA	NA	False	ATTAAA	-12	NA	43993612	44043224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_43993874_44020976_44021042_44022100_44022130_44025360_44025444_44033002_44033100_44035777
ENSMUSG00000068284.15_11	chr16	+	3762	1	ISM	ENSMUSG00000068284.15	ENSMUST00000119746.8	12708	7	45859	4599	45708	-4597	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTATTGTCCTTCATAAC	NA	False	NA	NA	False	ATTAAA	-17	NA	44039467	44043229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_44039500_44043200
ENSMUSG00000068284.15_12	chr16	+	2587	1	ISM	ENSMUSG00000068284.15	ENSMUST00000119746.8	12708	7	51630	3	51479	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTCTCTCTCTTCCCGCC	NA	False	NA	NA	False	AATAAA	-21	NA	44045238	44047825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_44045200_44047800
ENSMUSG00000068284.15_2	chr16	+	869	6	ISM	ENSMUSG00000068284.15	ENSMUST00000119746.8	12708	7	-3	14520	-3	13	5prime_fragment	FALSE	canonical	3	31	junction_1	10.2097992144802	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTACTTCTGGGTATTTCA	NA	False	NA	NA	False	NA	NA	NA	43993605	44033308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_43993874_44019266_44019385_44020976_44021042_44022100_44022130_44025360_44025444_44033002
ENSMUSG00000068284.15_3	chr16	+	763	5	NIC	ENSMUSG00000068284.15	novel	757	7	NA	NA	-11	17	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	22.9401394939089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGGGTATTTCATGTT	NA	False	NA	NA	False	NA	NA	NA	43993597	44033312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_43993874_44020976_44021042_44022100_44022130_44025360_44025444_44033002
ENSMUSG00000068290.12_1	chr2	-	1102	9	FSM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	60	76	60	-1	multi-exon	FALSE	canonical	0	0	junction_6	130.411607995608	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGCTTGTTGTTTGTAG	NA	False	NA	-5	True	ATTAAA	-15	NA	130506519	130495955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996_130504110_130505267_130505475_130506394
ENSMUSG00000068290.12_9	chr2	-	3181	7	ISM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	60	75	60	0	intron_retention	FALSE	canonical	0	0	junction_6	148.454257825994	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCTTGTTGTTTGTAGA	NA	False	NA	-4	True	ATTAAA	-16	NA	130506519	130495954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996
ENSMUSG00000068299.12_0	chr6	-	3046	4	FSM	ENSMUSG00000068299.12	ENSMUST00000095757.4	3019	4	-34	7	-34	-7	multi-exon	FALSE	canonical	2	6	junction_3	4.49691252107735	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGACTCGGGTGGATC	NA	False	NA	NA	False	NA	NA	NA	85881900	85876039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_85878596_85878934_85879080_85879173_85879312_85881693
ENSMUSG00000068299.12_2	chr6	-	5405	3	ISM	ENSMUSG00000068299.12	ENSMUST00000095757.4	3019	4	-13	9	-13	-9	intron_retention	FALSE	canonical	3	15	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACTTGACTCGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	85881879	85876041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_85878596_85878934_85879080_85879173
ENSMUSG00000068299.12_5	chr6	-	3048	4	NNC	ENSMUSG00000068299.12	novel	3019	4	NA	NA	-34	-2	intron_retention	FALSE	canonical	0	0	junction_3	7.31816613336672	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTCGGGTGGATCTGTGT	NA	False	NA	NA	False	NA	NA	NA	85881900	85876034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_85878596_85878934_85879080_85879173_85879309_85881693
ENSMUSG00000068323.13_15	chr6	+	3006	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	2	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	141.117169598726	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGCCATGTCTAATAACTG	5728	False	NA	23	True	AATAAA	-24	NA	83254376	83281925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307_83281566_83281644
ENSMUSG00000068323.13_4	chr6	+	1896	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	40020	1190	2	278	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	458	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAGGCAAGTGGCCAGT	5728	False	NA	9	True	AATAAA	-19	NA	83254376	83280736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ENSMUSG00000068323.13_8	chr6	+	1780	11	NIC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	2	276	combination_of_known_junctions	FALSE	canonical	3	81	junction_2	130.075362770972	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATAAGGCAAGTGGCCA	5728	False	NA	7	True	AATAAA	-17	NA	83254376	83280734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83254554_83256945_83257147_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ENSMUSG00000068327.6_0	chr6	-	1945	3	FSM	ENSMUSG00000068327.6	ENSMUST00000089641.6	1236	3	-442	-267	-442	0	multi-exon	FALSE	canonical	3	90	junction_1	3	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCAGTCTCCAGTTGTC	6734	False	NA	-6	True	AAAACA	-20	NA	83047716	83045304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83045956_83046034_83046273_83046660
ENSMUSG00000068327.6_1	chr6	-	1646	2	FSM	ENSMUSG00000068327.6	ENSMUST00000174674.3	1514	2	-132	0	-64	0	multi-exon	FALSE	canonical	3	96	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCAGTCTCCAGTTGTC	7112	False	NA	-6	True	AAAACA	-20	NA	83047338	83045304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83046273_83046660
ENSMUSG00000068327.6_2	chr6	-	2670	2	ISM	ENSMUSG00000068327.6	ENSMUST00000089641.6	1236	3	-779	-267	-779	0	intron_retention	FALSE	canonical	3	90	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCAGTCTCCAGTTGTC	6397	False	NA	-6	True	AAAACA	-20	NA	83048053	83045304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_83045956_83046034
ENSMUSG00000068328.10_0	chr6	+	1427	12	FSM	ENSMUSG00000068328.11	ENSMUST00000092618.10	1769	12	210	132	0	0	multi-exon	FALSE	canonical	3	960	junction_10	78.8006166859286	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAAGGTCTCTGTTGCCT	5423	False	NA	3	True	ATTAAA	-13	NA	83031711	83034657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068328.10_1	chr6	+	1656	11	NIC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	1	0	intron_retention	TRUE	canonical	3	960	junction_9	76.9269783626005	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTCTGTTGCCTCT	5422	False	NA	5	True	ATTAAA	-15	NA	83031710	83034659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83031814_83031891_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068329.13_0	chr6	-	1514	8	NIC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-6	3	combination_of_known_junctions	FALSE	canonical	3	30	junction_4	183.177063888179	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTCAAAAGTGGGGGTT	2020	False	NA	-9	True	AATAAA	-20	NA	83031429	83028257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029708_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068329.13_1	chr6	-	1593	8	FSM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	114	18	-15	0	multi-exon	FALSE	canonical	3	429	junction_7	63.5991913695225	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGTTACAGTCAAAAGT	2011	False	NA	-16	True	AATAAA	-13	NA	83031438	83028264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068329.13_11	chr6	-	1712	7	FSM	ENSMUSG00000068329.13	ENSMUST00000154829.8	2512	7	800	0	-31	0	multi-exon	FALSE	canonical	3	465	junction_4	56.9846470551499	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGTTACAGTCAAAAGT	1995	False	NA	-16	True	AATAAA	-13	NA	83031454	83028264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593
ENSMUSG00000068329.13_3	chr6	-	1838	7	NIC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-18	4	intron_retention	FALSE	canonical	3	429	junction_6	64.9095524557056	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTCAAAAGTGGGGGTTG	2008	False	NA	-8	True	AATAAA	-21	NA	83031441	83028256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068335.7_0	chr6	-	1690	5	NIC	ENSMUSG00000068335.7	novel	1807	5	NA	NA	36	2	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	11.7686022959398	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGCCTCTGCGTATGAA	NA	False	NA	-8	True	ATTAAA	-15	NA	83010413	83007918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_83009042_83009285_83009397_83009515_83009610_83009747_83010048_83010351
ENSMUSG00000068335.7_1	chr6	-	1770	5	FSM	ENSMUSG00000068335.7	ENSMUST00000089651.6	1807	5	33	4	30	2	multi-exon	FALSE	canonical	3	30	junction_1	5.31507290636732	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGCCTCTGCGTATGAA	NA	False	NA	-8	True	ATTAAA	-15	NA	83010419	83007918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83009042_83009211_83009397_83009515_83009610_83009747_83010048_83010351
ENSMUSG00000068348.5_0	chr15	-	971	4	Fusion	ENSMUSG00000068348.5_ENSMUSG00000099467.2	novel	408	3	NA	NA	-18042	385	multi-exon	TRUE	non_canonical	0	0	junction_2	35.8267435801184	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAAGTCTCTGTTTTTC	NA	False	NA	-6	True	AATAAA	-15	NA	75186990	75107060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr15_-_75107668_75109440_75109558_75168878_75168981_75186845
ENSMUSG00000068348.5_3	chr15	-	902	3	Fusion	ENSMUSG00000068348.5_ENSMUSG00000099467.2	novel	408	3	NA	NA	-108	385	multi-exon	FALSE	canonical	0	0	junction_2	38	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAAGTCTCTGTTTTTC	NA	False	NA	-6	True	AATAAA	-15	NA	75169056	75107060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr15_-_75107668_75109440_75109558_75168878
ENSMUSG00000068348.5_4	chr15	-	837	4	NNC	ENSMUSG00000068348.5	novel	408	3	NA	NA	-296	385	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	32.5678778348646	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAAGTCTCTGTTTTTC	1056	False	NA	-6	True	AATAAA	-15	NA	75110913	75107060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_75107668_75109440_75109558_75110548_75110631_75110882
ENSMUSG00000068373.16_0	chr2	-	5444	1	ISM	ENSMUSG00000068373.16	ENSMUST00000136156.9	10127	21	261814	4	9899	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTGCCTGTTTCTCAT	NA	False	NA	NA	False	AATAAA	-25	NA	103978865	103973421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_103973400_103978900
ENSMUSG00000068373.16_2	chr2	-	3181	7	ISM	ENSMUSG00000068373.16	ENSMUST00000136156.9	10127	21	208944	3968	39793	-3968	3prime_fragment	FALSE	canonical	0	0	junction_5	1.77169096878911	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGTATATATGGTATAT	NA	False	NA	NA	False	AATAAA	-19	NA	104031735	103977385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_103979408_103983276_103983429_103985254_103985404_103987127_103987226_103998182_103998534_104022779_104022910_104031456
ENSMUSG00000068391.9_0	chr15	+	848	3	FSM	ENSMUSG00000068391.9	ENSMUST00000089765.9	871	3	23	0	3	0	multi-exon	FALSE	canonical	3	479	junction_2	8	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCTTCATTGAAGTGG	NA	False	NA	7	True	ATTAAA	-18	NA	72962263	72965924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_72962433_72964681_72964809_72965372
ENSMUSG00000068394.5_11	chr2	-	1871	1	NIC	ENSMUSG00000068394.5	novel	5768	28	NA	NA	60153	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTGTCATGACTTATT	NA	False	NA	-2	True	AATAAA	-16	NA	125406880	125405009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_125405000_125406900
ENSMUSG00000068394.5_19	chr2	-	2362	8	ISM	ENSMUSG00000068394.5	ENSMUST00000089776.3	5768	28	45463	3	45463	-3	3prime_fragment	FALSE	canonical	3	25	junction_1	8.28817697392016	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATTTGTCATGACTTAT	NA	False	NA	-3	True	AATAAA	-15	NA	125421570	125405010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_125406318_125408128_125408242_125408452_125408610_125410743_125410848_125411474_125411572_125413588_125413754_125418633_125418776_125421293
ENSMUSG00000068394.5_3	chr2	-	5749	28	NNC	ENSMUSG00000068394.5	novel	5768	28	NA	NA	12	-4	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	8.19933417618679	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAGATTTGTCATGACTTA	NA	False	NA	-4	True	AATAAA	-14	NA	125467021	125405011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_125406318_125408128_125408242_125408452_125408610_125410743_125410848_125411474_125411572_125413588_125413754_125418633_125418776_125421293_125421945_125423615_125423748_125425711_125425985_125428250_125428395_125429520_125429648_125429812_125429942_125431375_125431486_125432029_125432153_125436792_125436992_125443068_125443233_125444761_125444854_125447255_125447404_125452927_125453129_125454856_125454997_125456207_125456349_125460292_125460462_125461585_125461811_125461916_125461990_125462206_125462311_125463092_125463187_125466795
ENSMUSG00000068394.5_6	chr2	-	5751	28	NNC	ENSMUSG00000068394.5	novel	5768	28	NA	NA	9	-2	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_1	9.53097613955882	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTGTCATGACTTATT	NA	False	NA	-2	True	AATAAA	-16	NA	125467024	125405009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_125406315_125408128_125408242_125408452_125408610_125410743_125410848_125411474_125411572_125413588_125413754_125418633_125418776_125421293_125421945_125423615_125423748_125425711_125425985_125428250_125428395_125429520_125429648_125429812_125429942_125431375_125431486_125432029_125432153_125436792_125436992_125443068_125443233_125444761_125444854_125447255_125447404_125452927_125453129_125454856_125454997_125456207_125456349_125460292_125460462_125461585_125461811_125461916_125461990_125462206_125462311_125463092_125463187_125466795
ENSMUSG00000068396.10_0	chr6	+	423	1	FSM	ENSMUSG00000068396.10	ENSMUST00000121998.2	354	1	-32	-37	-32	37	mono-exon	FALSE	NA	NA	NA	NA	NA	825	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	71101561	71101984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_71101600_71102000
ENSMUSG00000068397.5_0	chr15	+	548	1	FSM	ENSMUSG00000068397.5	ENSMUST00000089785.5	483	1	-36	-29	-36	29	mono-exon	FALSE	NA	NA	NA	NA	NA	526	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	68181631	68182179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_68181600_68182200
ENSMUSG00000068417.9_0	chr14	+	1224	6	FSM	ENSMUSG00000068417.9	ENSMUST00000095925.5	1372	6	149	-1	-103	1	multi-exon	FALSE	canonical	2	7	junction_3	36.6911433454996	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTGCTTGTCTTGGTTC	NA	False	NA	NA	False	NA	NA	NA	51193597	51202207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_51193686_51196971_51197142_51200561_51200666_51200846_51201023_51201135_51201327_51201712
ENSMUSG00000068479.6_11	chr2	-	2899	6	ISM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	4051	841	4051	-841	3prime_fragment	FALSE	canonical	3	437	junction_3	21.2922521119773	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAACTCAGATTTATTT	NA	False	NA	NA	False	NA	NA	NA	121333095	121323232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812
ENSMUSG00000068479.6_3	chr2	-	3312	7	FSM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	18	868	18	-868	multi-exon	FALSE	canonical	3	409	junction_6	26.8747093007534	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAGAAGCCAGTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	121337128	121323259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
ENSMUSG00000068479.6_4	chr2	-	3190	1	Genic_Genomic	ENSMUSG00000068479.6	novel	NA	NA	NA	NA	12823	1258	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAATAAATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	121324323	121321133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_121321100_121324300
ENSMUSG00000068522.5_0	chr15	+	1295	2	FSM	ENSMUSG00000068522.5	ENSMUST00000090025.5	1348	2	50	3	50	-3	multi-exon	FALSE	canonical	3	258	junction_1	0	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGGTGTTTCTAGTGGT	NA	False	NA	13	True	AATAAA	-24	NA	51903552	51909115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_51903927_51908194
ENSMUSG00000068522.5_1	chr15	+	597	1	ISM	ENSMUSG00000068522.5	ENSMUST00000090025.5	1348	2	5017	2	5017	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGGTGTTTCTAGTGGTC	NA	False	NA	14	True	AATAAA	-25	NA	51908519	51909116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_51908500_51909100
ENSMUSG00000068523.13_0	chr3	+	493	3	FSM	ENSMUSG00000068523.13	ENSMUST00000090031.12	593	3	71	29	-12	-4	multi-exon	FALSE	canonical	3	3573	junction_2	41.5	614	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTTTGGCCTCCTTACT	NA	False	NA	-3	True	AATAAA	-10	NA	146205632	146211298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_146205776_146209014_146209155_146211088
ENSMUSG00000068566.14_27	chr7	+	2839	2	FSM	ENSMUSG00000068566.14	ENSMUST00000164553.8	2798	2	-43	2	-43	-2	multi-exon	FALSE	canonical	3	952	junction_1	0	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAAAAAACCCTCAATA	2747	False	NA	-15	True	TTTAAA	-8	NA	3341575	3347836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3341816_3345237
ENSMUSG00000068566.14_3	chr7	+	2888	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203566.3	4027	3	7	1132	7	-12	multi-exon	FALSE	canonical	3	270	junction_1	341	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAACAAAAAAA	278	False	NA	-25	True	NA	NA	NA	3339106	3347826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3339318_3341727_3341816_3345237
ENSMUSG00000068566.14_37	chr7	+	2772	3	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	-74	-13	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	427.5	88	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATAATGATAACAGGAAG	2716	False	NA	1	True	TTTAAA	-24	NA	3341544	3347852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_3341614_3341727_3341816_3345237
ENSMUSG00000068566.14_4	chr7	+	2727	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	46	40	5	-13	multi-exon	FALSE	canonical	3	335	junction_1	308.5	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAACAAAAACAAAAAA	276	False	NA	-26	True	NA	NA	NA	3339104	3347825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3339156_3341727_3341816_3345237
ENSMUSG00000068566.14_5	chr7	+	2698	4	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	5	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.295151715903	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAACAAAAAAA	276	False	NA	-25	True	NA	NA	NA	3339104	3347826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_3339156_3341727_3341816_3345237_3346670_3346699
ENSMUSG00000068566.14_52	chr7	+	1651	1	ISM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	7051	105	4491	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTCCTGTAGCTCCTGCT	7281	False	NA	43	True	NA	NA	NA	3346109	3347760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_3346100_3347800
ENSMUSG00000068566.14_7	chr7	+	2843	4	NNC	ENSMUSG00000068566.14	novel	4027	3	NA	NA	22	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	400.600660120386	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAACAAAAAAA	293	False	NA	-25	True	NA	NA	NA	3339121	3347826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_3339318_3341727_3341816_3345237_3346670_3346699
ENSMUSG00000068580.12_3	chr2	+	1623	11	FSM	ENSMUSG00000068580.12	ENSMUST00000090174.11	2008	11	380	5	2	-5	multi-exon	FALSE	canonical	1	23	junction_1	26.2152627299442	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGCCCCAGATGTTTTTT	291	False	NA	3	True	NA	NA	NA	119039494	119047525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119039665_119040962_119041085_119041261_119041313_119041661_119041781_119041878_119042025_119042386_119042496_119045314_119045522_119045934_119046009_119046689_119046789_119046912_119047023_119047109
ENSMUSG00000068580.12_5	chr2	+	1634	11	NNC	ENSMUSG00000068580.12	novel	2008	11	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_6	37.1619428986161	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGCCCCAGATGTTTTTT	283	False	NA	3	True	NA	NA	NA	119039486	119047525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_119039665_119040962_119041085_119041261_119041313_119041661_119041781_119041878_119042025_119042386_119042496_119045311_119045522_119045934_119046009_119046689_119046789_119046912_119047023_119047109
ENSMUSG00000068580.12_7	chr2	+	1903	11	NIC	ENSMUSG00000068580.12	novel	2008	11	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	1	3	junction_5	37.2821673189744	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCAGATGTTTTTTCTGT	291	False	NA	7	True	NA	NA	NA	119039494	119047529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119039665_119040962_119041085_119041261_119041313_119041661_119041781_119041878_119042025_119042110_119042496_119045314_119045522_119045934_119046009_119046689_119046789_119046912_119047023_119047109
ENSMUSG00000068617.6_0	chr16	+	1955	6	FSM	ENSMUSG00000068617.6	ENSMUST00000090277.3	2752	6	5	792	5	-792	multi-exon	FALSE	canonical	0	0	junction_4	2.41660919471891	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCACTTTTAATGAGTAG	NA	False	NA	NA	False	AATAAA	-12	NA	14724505	14743209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_14724677_14734689_14734849_14735506_14735612_14738158_14738311_14738644_14738750_14741946
ENSMUSG00000068663.15_19	chr16	+	3879	24	NIC	ENSMUSG00000068663.15	novel	6244	24	NA	NA	15	15	combination_of_known_junctions	FALSE	canonical	0	0	junction_23	19.7105711803867	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGAAGTGTCAGCTGTTA	NA	False	NA	NA	False	AAAAAG	-33	NA	10363287	10560344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_10363507_10377884_10378014_10381000_10381135_10386245_10386395_10389357_10389464_10391163_10391288_10394365_10394541_10395751_10395806_10398792_10398907_10413665_10413850_10428866_10429000_10432363_10432465_10445242_10445366_10447908_10448019_10448620_10448666_10453109_10453161_10456650_10456780_10462624_10462746_10506343_10506496_10509249_10509455_10512483_10512655_10549524_10549684_10556255_10556380_10559477
ENSMUSG00000068663.15_2	chr16	+	3828	21	ISM	ENSMUSG00000068663.15	ENSMUST00000155633.8	6213	23	15	49034	2	116	5prime_fragment	TRUE	canonical	3	10	junction_9	19.7111009332305	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTTTAAAAAAGGAAATA	NA	False	NA	NA	False	NA	NA	NA	10363242	10513708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_10363507_10377884_10378014_10381000_10381135_10386245_10386395_10389357_10389464_10391163_10391288_10394365_10394541_10395751_10395806_10398792_10398907_10413665_10413850_10428866_10429000_10432363_10432465_10445242_10445366_10447908_10448019_10448620_10448666_10453109_10453161_10456650_10456780_10462624_10462746_10506343_10506496_10509249_10509455_10512483
ENSMUSG00000068663.15_5	chr16	+	3820	23	FSM	ENSMUSG00000068663.15	ENSMUST00000155633.8	6213	23	49	2344	4	69	multi-exon	FALSE	canonical	3	10	junction_9	19.0952376045325	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGAAGTTGTGGCTGTC	NA	False	NA	NA	False	NA	NA	NA	10363276	10560398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_10363507_10377884_10378014_10381000_10381135_10386245_10386395_10389357_10389464_10391163_10391288_10394365_10394541_10395751_10395806_10398792_10398907_10413665_10413850_10428866_10429000_10432363_10432465_10445242_10445366_10447908_10448019_10448620_10448666_10453109_10453161_10456650_10456780_10462624_10462746_10506343_10506496_10509249_10509455_10512483_10512655_10549524_10549684_10559477
ENSMUSG00000068663.15_6	chr16	+	3760	23	NIC	ENSMUSG00000068663.15	novel	6213	23	NA	NA	5	-49	combination_of_known_junctions	FALSE	canonical	2	5	junction_10	19.400998951873	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAATCTATTTTGGAGG	NA	False	NA	NA	False	AATGAA	-13	NA	10363266	10560280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_10363507_10377884_10378014_10381000_10381135_10386245_10386395_10389357_10389464_10391163_10391288_10394365_10394541_10395751_10395806_10398792_10398907_10413665_10413898_10428866_10429000_10432363_10432465_10445242_10445366_10447908_10448019_10448620_10448666_10453109_10453161_10456650_10456780_10462624_10462746_10506343_10506496_10509249_10509455_10512483_10512655_10549524_10549684_10559477
ENSMUSG00000068686.13_0	chr2	+	433	4	FSM	ENSMUSG00000068686.13	ENSMUST00000111132.8	436	4	-1	4	-1	-4	multi-exon	FALSE	canonical	3	19	junction_3	23.6690139681023	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAGTAACTGTCTTGGC	NA	False	NA	NA	False	NA	NA	NA	103900192	103921528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103921348
ENSMUSG00000068686.13_1	chr2	+	603	4	FSM	ENSMUSG00000068686.13	ENSMUST00000129749.8	434	4	-43	-126	-1	-49	multi-exon	FALSE	canonical	3	21	junction_3	22.7596133534821	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATAAGAGGGTGGAGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	103900192	103915116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103914766
ENSMUSG00000068699.13_1	chr6	+	5550	28	ISM	ENSMUSG00000068699.13	ENSMUST00000065090.8	9038	48	14227	2	14227	-2	3prime_fragment	FALSE	canonical	0	0	junction_1	2.65480902777147	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTTAGCTCTTCTCTGT	NA	False	NA	NA	False	AATAAA	-16	NA	29447501	29461880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_29447992_29448556_29448731_29448832_29448996_29449234_29449396_29450564_29450733_29450812_29450937_29451370_29451528_29451602_29451793_29451995_29452020_29452131_29452380_29452797_29452897_29453197_29453298_29453618_29453760_29454041_29454171_29454260_29454435_29455118_29455281_29455359_29455564_29455782_29455936_29456023_29456147_29456290_29456534_29456735_29457006_29457099_29457238_29457441_29457558_29458775_29458909_29459007_29459185_29459366_29459586_29460693_29460904_29461020
ENSMUSG00000068706.4_0	chr15	-	559	1	FSM	ENSMUSG00000068706.4	ENSMUST00000090488.4	482	1	-25	-52	-25	52	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGATAG	NA	False	NA	NA	False	NA	NA	NA	5150642	5150083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_5150100_5150600
ENSMUSG00000068732.6_0	chr3	-	1931	1	ISM	ENSMUSG00000068732.6	ENSMUST00000106622.3	2752	3	3815	0	3815	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	9385	False	NA	-14	True	AATAAA	-15	NA	108465671	108463740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_108463700_108465700
ENSMUSG00000068732.6_1	chr3	-	2776	3	FSM	ENSMUSG00000068732.6	ENSMUST00000090546.6	2864	3	88	0	88	0	multi-exon	FALSE	canonical	3	163	junction_1	15	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	5362	False	NA	-14	True	AATAAA	-15	NA	108469694	108463740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108466277_108467502_108467635_108469586
ENSMUSG00000068735.15_0	chr2	+	2639	8	FSM	ENSMUSG00000068735.15	ENSMUST00000090554.11	2654	8	11	4	11	-4	multi-exon	FALSE	canonical	3	171	junction_2	50.0424309757148	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAGAAACAATCTGCGTG	NA	False	NA	6	True	AAGAAA	-39	NA	93017939	93032090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_93018093_93027241_93027324_93027956_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
ENSMUSG00000068735.15_1	chr2	+	2642	8	FSM	ENSMUSG00000068735.15	ENSMUST00000111266.8	2703	8	47	14	11	-4	multi-exon	FALSE	canonical	3	75	junction_2	82.3119997699148	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAGAAACAATCTGCGTG	NA	False	NA	6	True	AAGAAA	-39	NA	93017939	93032090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_93018093_93027241_93027324_93027953_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
ENSMUSG00000068735.15_2	chr2	+	2789	8	NIC	ENSMUSG00000068735.15	novel	2703	8	NA	NA	11	-4	combination_of_known_splicesites	FALSE	canonical	3	62	junction_2	86.7591082085498	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAGAAACAATCTGCGTG	NA	False	NA	6	True	AAGAAA	-39	NA	93017939	93032090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_93018093_93027241_93027324_93027806_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
ENSMUSG00000068735.15_35	chr2	+	1542	1	ISM	ENSMUSG00000068735.15	ENSMUST00000111266.8	2703	8	12625	45	1254	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAACAACAACAACAAC	83	False	NA	-25	True	AAGAAA	-8	NA	93030517	93032059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_93030500_93032100
ENSMUSG00000068735.15_7	chr2	+	2789	9	NIC	ENSMUSG00000068735.15	novel	2654	8	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	126.560015407711	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAGAAACAATCTGCGTG	NA	False	NA	6	True	AAGAAA	-39	NA	93017924	93032090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_93018093_93019433_93019569_93027241_93027324_93027956_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
ENSMUSG00000068739.14_0	chr3	-	1848	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	5	1717	5	30	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	3222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGAACCTTGTCTCTG	NA	False	NA	-9	True	NA	NA	NA	108352509	108333897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
ENSMUSG00000068739.14_5	chr3	-	1920	12	FSM	ENSMUSG00000068739.14	ENSMUST00000102625.11	1866	12	-24	-30	5	30	multi-exon	FALSE	canonical	3	101	junction_3	974.241336537401	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGAACCTTGTCTCTG	NA	False	NA	-9	True	NA	NA	NA	108352509	108333897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
ENSMUSG00000068742.12_1	chr2	-	3960	12	FSM	ENSMUSG00000068742.12	ENSMUST00000090559.12	3976	12	9	7	2	-7	multi-exon	FALSE	canonical	3	83	junction_5	10.1019595513375	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAACTGTGTTGTGTAA	NA	False	NA	NA	False	TATAAA	-17	NA	92264379	92233997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_92236166_92241970_92242113_92242958_92243052_92243293_92243497_92243611_92243764_92243980_92244293_92246498_92246640_92252506_92252596_92253222_92253408_92254889_92255033_92257246_92257356_92264156
ENSMUSG00000068742.12_6	chr2	-	1401	1	ISM	ENSMUSG00000068742.12	ENSMUST00000090559.12	3976	12	28990	7	27339	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAACTGTGTTGTGTAA	NA	False	NA	NA	False	TATAAA	-17	NA	92235398	92233997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_92234000_92235400
ENSMUSG00000068744.13_0	chr3	+	1710	7	NIC	ENSMUSG00000068744.13	novel	1687	8	NA	NA	-5	-26	intron_retention	FALSE	canonical	3	155	junction_1	118.602510747267	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGAATTAAAAAAATTTT	7039	False	NA	-10	True	NA	NA	NA	108291161	108295469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_108291212_108291551_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068744.13_2	chr3	+	1619	8	FSM	ENSMUSG00000068744.13	ENSMUST00000102629.8	1687	8	-14	82	6	-30	multi-exon	FALSE	canonical	3	155	junction_1	112.452983372553	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATGAATTAAAAAAA	7038	False	NA	-14	True	NA	NA	NA	108291160	108295465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108291212_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068744.13_23	chr3	+	1810	7	ISM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	164	21	66	-21	3prime_fragment	FALSE	canonical	3	403	junction_4	36.7090663944965	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAAAATTTTTTTCT	7196	False	NA	-5	True	AATAAA	-3	NA	108291318	108295474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068744.13_3	chr3	+	1717	7	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-4	-21	intron_retention	FALSE	canonical	3	329	junction_1	60.1405760605009	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAAAATTTTTTTCT	7068	False	NA	-5	True	AATAAA	-3	NA	108291190	108295474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_108291243_108291551_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068744.13_34	chr3	+	1401	5	ISM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	1194	26	176	-26	3prime_fragment	FALSE	canonical	3	403	junction_2	35.947009611371	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGAATTAAAAAAATTTT	8226	False	NA	-10	True	NA	NA	NA	108292348	108295469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068744.13_4	chr3	+	1622	8	FSM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	34	30	-6	-30	multi-exon	FALSE	canonical	3	329	junction_1	57.4402973103556	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATGAATTAAAAAAA	7066	False	NA	-14	True	NA	NA	NA	108291188	108295465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108291243_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068747.15_1	chr3	+	2768	20	NNC	ENSMUSG00000068747.15	novel	6796	20	NA	NA	-1	-3953	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_7	9.56679390947517	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCTGTCTTTTGTAAGA	4988	False	NA	15	True	TTTAAA	-21	NA	108191405	108264801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_108191757_108215792_108215853_108217459_108217534_108231911_108232015_108232964_108233130_108235323_108235398_108239226_108239277_108241884_108242013_108245106_108245252_108246126_108246283_108247914_108248022_108252169_108252273_108253029_108253199_108253972_108254164_108255883_108256074_108258987_108259105_108261448_108261558_108263546_108263654_108263892_108264005_108264544
ENSMUSG00000068747.15_11	chr3	+	5716	12	ISM	ENSMUSG00000068747.15	ENSMUST00000102632.7	6796	20	53698	75	-17678	-2	3prime_fragment	FALSE	canonical	3	29	junction_9	9.02887928577101	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTGTACTGGTAATTTT	NA	False	NA	-52	True	AATAAA	-14	NA	108245104	108268752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_108245252_108246126_108246283_108247914_108248022_108252169_108252273_108253029_108253199_108253972_108254164_108255883_108256074_108258987_108259105_108261448_108261558_108263546_108263654_108263892_108264005_108264544
ENSMUSG00000068747.15_12	chr3	+	2904	1	ISM	ENSMUSG00000068747.15	ENSMUST00000135636.6	6836	21	74457	1	3072	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTGGTAATTTTCTGTAT	8689	False	NA	-46	True	AATAAA	-20	NA	108265854	108268758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_108265900_108268800
ENSMUSG00000068747.15_2	chr3	+	3313	20	FSM	ENSMUSG00000068747.15	ENSMUST00000102632.7	6796	20	5	3478	5	-3405	multi-exon	FALSE	canonical	3	21	junction_7	9.89893527949294	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGAGCTCTTTCAGG	4994	False	NA	NA	False	ATTAAA	-13	NA	108191411	108265349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108191757_108215792_108215853_108217459_108217534_108231911_108232015_108232964_108233130_108235323_108235398_108239226_108239277_108241881_108242013_108245106_108245252_108246126_108246283_108247914_108248022_108252169_108252273_108253029_108253199_108253972_108254164_108255883_108256074_108258987_108259105_108261448_108261558_108263546_108263654_108263892_108264005_108264544
ENSMUSG00000068747.15_3	chr3	+	3417	21	NNC	ENSMUSG00000068747.15	novel	6836	21	NA	NA	5	-3397	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_17	14.2123186004255	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTTTCAGGCTGTACTT	4994	False	NA	NA	False	ATTAAA	-21	NA	108191411	108265357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_108191757_108215792_108215853_108217459_108217534_108231911_108232015_108232964_108233130_108235323_108235398_108239226_108239277_108241884_108242013_108245106_108245252_108246126_108246283_108247914_108248022_108252169_108252273_108253029_108253199_108253972_108254164_108255883_108256074_108258987_108259105_108261448_108261558_108262787_108262887_108263546_108263654_108263892_108264005_108264544
ENSMUSG00000068747.15_5	chr3	+	2847	21	FSM	ENSMUSG00000068747.15	ENSMUST00000135636.6	6836	21	31	3958	22	-3953	multi-exon	FALSE	canonical	2	6	junction_17	14.3960932200372	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCTGTCTTTTGTAAGA	5011	False	NA	15	True	TTTAAA	-21	NA	108191428	108264801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108191757_108215792_108215853_108217459_108217534_108231911_108232015_108232964_108233130_108235323_108235398_108239226_108239277_108241881_108242013_108245106_108245252_108246126_108246283_108247914_108248022_108252169_108252273_108253029_108253199_108253972_108254164_108255883_108256074_108258987_108259105_108261448_108261558_108262787_108262887_108263546_108263654_108263892_108264005_108264544
ENSMUSG00000068749.10_0	chr3	+	975	9	FSM	ENSMUSG00000068749.10	ENSMUST00000090569.10	1239	9	243	21	243	-21	multi-exon	FALSE	canonical	3	2544	junction_4	248.775972262194	1117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAATTTAAAAAT	NA	False	NA	-10	True	NA	NA	NA	108164484	108187269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_108164622_108169001_108169069_108172381_108172509_108173748_108173817_108175108_108175217_108175348_108175408_108176143_108176247_108179606_108179694_108187050
ENSMUSG00000068749.10_1	chr3	+	974	9	NNC	ENSMUSG00000068749.10	novel	1239	9	NA	NA	243	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	973.551544282582	75	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAATTTAAAAAT	NA	False	NA	-10	True	NA	NA	NA	108164484	108187269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_108164621_108169001_108169069_108172381_108172509_108173748_108173817_108175108_108175217_108175348_108175408_108176143_108176247_108179606_108179694_108187050
ENSMUSG00000068758.9_2	chr14	-	1297	11	NIC	ENSMUSG00000068758.9	novel	1614	12	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	9.8974744253269	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTGTGCTGCTATCAG	NA	False	NA	0	True	AATAAA	-18	NA	8123348	8114270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8121694_8121850_8123250
ENSMUSG00000068758.9_3	chr14	-	1572	11	FSM	ENSMUSG00000068758.9	ENSMUST00000224163.2	2315	11	224	519	224	-1	multi-exon	FALSE	canonical	3	7	junction_10	8.68849814409832	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTGTGCTGCTATCAG	NA	False	NA	0	True	AATAAA	-18	NA	8122947	8114270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8121694_8121850_8122574
ENSMUSG00000068758.9_4	chr14	-	635	7	ISM	ENSMUSG00000068758.9	ENSMUST00000224877.2	1128	10	3772	-66	569	-1	3prime_fragment	FALSE	canonical	3	14	junction_5	7.99305253885453	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTGTGCTGCTATCAG	NA	False	NA	0	True	AATAAA	-18	NA	8119573	8114270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495
ENSMUSG00000068758.9_7	chr14	-	680	5	NIC	ENSMUSG00000068758.9	novel	1128	10	NA	NA	375	-1	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	12.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTGTGCTGCTATCAG	NA	False	NA	0	True	AATAAA	-18	NA	8119767	8114270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8119495
ENSMUSG00000068758.9_9	chr14	-	843	7	NIC	ENSMUSG00000068758.9	novel	1128	10	NA	NA	66	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	13.2340050207369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTGTGCTGCTATCAG	NA	False	NA	0	True	AATAAA	-18	NA	8122646	8114270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8119495_8119729_8120390_8120521_8122574
ENSMUSG00000068762.12_1	chr3	-	1132	8	FSM	ENSMUSG00000068762.12	ENSMUST00000106685.9	1153	8	19	2	4	-1	multi-exon	FALSE	canonical	3	28	junction_3	8.51649060616507	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTCTGTGTCCTGTCGTA	1809	False	NA	-3	True	AGTAAA	-14	NA	107851046	107846164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_107846633_107848308_107848420_107848504_107848601_107849448_107849550_107849648_107849731_107850017_107850083_107850560_107850637_107850913
ENSMUSG00000068762.12_3	chr3	-	1153	9	Fusion	ENSMUSG00000068762.12_ENSMUSG00000089664.3	novel	1153	8	NA	NA	-324	-3	multi-exon	FALSE	canonical	3	14	junction_7	13.2452821789496	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTAGCTCTGTGTCCTGTCG	7913	False	NA	-5	True	AGTAAA	-12	NA	107860761	107846166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr3_-_107846633_107848308_107848420_107848504_107848601_107849448_107849550_107849648_107849731_107850017_107850083_107850560_107850637_107860362_107860439_107860681
ENSMUSG00000068798.11_0	chr3	-	1404	8	FSM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	-13	1016	-13	31	multi-exon	TRUE	canonical	3	409	junction_7	23.7667234354495	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGGTTTGTGTCTTTTTG	NA	False	NA	-13	True	ATTAAA	-40	NA	105708665	105635598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_105636281_105639271_105639388_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
ENSMUSG00000068798.11_1	chr3	-	419	1	ISM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	72635	1016	21627	31	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGGTTTGTGTCTTTTTG	NA	False	NA	-13	True	ATTAAA	-40	NA	105636017	105635598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_105635600_105636000
ENSMUSG00000068823.11_0	chr3	+	4030	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	4	-185	-1	-10	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGACACTAGCACCTAGCG	NA	False	NA	12	True	AATAAA	-15	NA	102927926	102965492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUSG00000068823.11_1	chr3	+	4118	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	185	15	-1	-15	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	1068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTGAGACACTAGCACC	NA	False	NA	7	True	AATAAA	-10	NA	102927926	102965487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUSG00000068854.8_0	chr3	+	2772	1	FSM	ENSMUSG00000068854.8	ENSMUST00000090781.8	2620	1	-154	2	-154	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATCTTTGCTGTATTGT	NA	False	NA	NA	False	NA	NA	NA	96128280	96131052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96128300_96131100
ENSMUSG00000068856.4_0	chr3	+	1534	6	FSM	ENSMUSG00000068856.4	ENSMUST00000076372.5	1915	6	206	175	-9	-175	multi-exon	FALSE	canonical	3	1297	junction_3	204.272758829953	1213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTCTGGTGAAGTAACT	NA	False	NA	20	True	AATAAA	-16	NA	96079853	96084705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96079924_96080286_96080416_96080856_96081400_96081638_96081846_96083950_96084125_96084294
ENSMUSG00000068860.6_0	chr3	-	1207	2	FSM	ENSMUSG00000068860.6	ENSMUST00000090815.6	1959	2	548	204	548	-17	multi-exon	FALSE	canonical	3	31	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGCTAAAAAATAC	NA	False	NA	-18	True	AATATA	-4	NA	95148361	95144434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95144541_95147260
ENSMUSG00000068860.6_1	chr3	-	726	3	FSM	ENSMUSG00000068860.6	ENSMUST00000107197.2	1289	3	546	17	546	-17	multi-exon	FALSE	canonical	3	16	junction_2	7.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGCTAAAAAATAC	NA	False	NA	-18	True	AATATA	-4	NA	95148363	95144434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95144541_95147260_95147423_95147905
ENSMUSG00000068874.14_0	chr3	+	1699	12	FSM	ENSMUSG00000068874.14	ENSMUST00000090839.12	1712	12	11	2	1	-2	multi-exon	FALSE	canonical	3	16	junction_2	7.58314791042644	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTCAGATCACTCTGTGA	2665	False	NA	NA	False	AATAAA	-12	NA	94840377	94852067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94840474_94844007_94844065_94844205_94844319_94844518_94844705_94845265_94845387_94846956_94847140_94847358_94847538_94849774_94849854_94849935_94850058_94851149_94851243_94851385_94851505_94851716
ENSMUSG00000068876.17_0	chr3	-	2539	9	ISM	ENSMUSG00000068876.17	ENSMUST00000107272.7	4963	21	17096	2	17084	-2	3prime_fragment	FALSE	canonical	3	17	junction_7	8.43263748776146	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTGTCTTCATTTTTC	4187	False	NA	NA	False	ATTAAA	-26	NA	94676678	94667377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94668809_94669080_94669245_94669865_94669975_94670288_94670408_94670494_94670579_94671768_94671859_94672805_94672968_94674426_94674598_94676469
ENSMUSG00000068876.17_1	chr3	-	4985	21	FSM	ENSMUSG00000068876.17	ENSMUST00000107273.9	5016	21	23	8	-2	-8	multi-exon	FALSE	canonical	2	3	junction_17	8.61553828846463	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGAAATTCTTGTCTTCA	NA	False	NA	NA	False	ATTAAA	-20	NA	94693780	94667383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94668809_94669080_94669245_94669865_94669975_94670288_94670408_94670494_94670579_94671768_94671859_94672805_94672968_94674426_94674598_94676469_94676728_94677271_94677479_94677802_94678013_94680437_94680571_94680806_94680956_94681512_94681726_94682209_94682343_94683418_94683547_94685303_94685400_94685510_94685581_94685688_94685790_94686460_94687330_94693686
ENSMUSG00000068876.17_10	chr3	-	478	1	ISM	ENSMUSG00000068876.17	ENSMUST00000107272.7	4963	21	25918	3	25906	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTTGTCTTCATTTTT	NA	False	NA	NA	False	ATTAAA	-25	NA	94667856	94667378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94667400_94667900
ENSMUSG00000068876.17_14	chr3	-	5629	20	NIC	ENSMUSG00000068876.17	novel	4963	21	NA	NA	2	-3	intron_retention	FALSE	canonical	3	13	junction_12	7.84298829362643	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTTGTCTTCATTTTT	NA	False	NA	NA	False	ATTAAA	-25	NA	94693772	94667378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_94668809_94669080_94669245_94669865_94669975_94670288_94670408_94670494_94670579_94671768_94671859_94672805_94672968_94674426_94674598_94676469_94676728_94677271_94677479_94677802_94678013_94680437_94680571_94680806_94680956_94681512_94681726_94682209_94682343_94683418_94683547_94685303_94685376_94685510_94685581_94685688_94687330_94693686
ENSMUSG00000068876.17_15	chr3	-	1552	2	ISM	ENSMUSG00000068876.17	ENSMUST00000107272.7	4963	21	24570	5	24558	-5	3prime_fragment	FALSE	canonical	3	27	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATTCTTGTCTTCATTT	NA	False	NA	NA	False	ATTAAA	-23	NA	94669204	94667380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94668809_94669080
ENSMUSG00000068876.17_3	chr3	-	4578	20	ISM	ENSMUSG00000068876.17	ENSMUST00000107272.7	4963	21	6734	8	6722	-8	3prime_fragment	FALSE	canonical	3	13	junction_12	7.64517844543892	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGAAATTCTTGTCTTCA	NA	False	NA	NA	False	ATTAAA	-20	NA	94687040	94667383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_94668809_94669080_94669245_94669865_94669975_94670288_94670408_94670494_94670579_94671768_94671859_94672805_94672968_94674426_94674598_94676469_94676728_94677271_94677479_94677802_94678013_94680437_94680571_94680806_94680956_94681512_94681726_94682209_94682343_94683418_94683547_94685303_94685376_94685510_94685581_94685688_94685790_94686460
ENSMUSG00000068876.17_8	chr3	-	4963	21	FSM	ENSMUSG00000068876.17	ENSMUST00000107272.7	4963	21	-12	12	-8	-12	multi-exon	FALSE	canonical	3	13	junction_12	7.64509646767129	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTATATGAAATTCTTGTC	NA	False	NA	NA	False	ATTAAA	-16	NA	94693786	94667387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_94668809_94669080_94669245_94669865_94669975_94670288_94670408_94670494_94670579_94671768_94671859_94672805_94672968_94674426_94674598_94676469_94676728_94677271_94677479_94677802_94678013_94680437_94680571_94680806_94680956_94681512_94681726_94682209_94682343_94683418_94683547_94685303_94685376_94685510_94685581_94685688_94685790_94686460_94687330_94693686
ENSMUSG00000068882.14_0	chr2	+	1667	12	FSM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	51	283	-10	-7	multi-exon	FALSE	canonical	3	1543	junction_7	118.150135613357	1276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAGCCAATAGTTCTT	NA	False	NA	7	True	AATATA	-9	NA	69691956	69701847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUSG00000068882.14_2	chr2	+	3172	11	NIC	ENSMUSG00000068882.14	novel	2088	12	NA	NA	-4	-7	intron_retention	FALSE	canonical	3	1543	junction_6	112.445586840925	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAGCCAATAGTTCTT	NA	False	NA	7	True	AATATA	-9	NA	69691962	69701847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUSG00000068882.14_9	chr2	+	1658	12	NIC	ENSMUSG00000068882.14	novel	2001	12	NA	NA	-4	-7	combination_of_known_junctions	FALSE	canonical	3	167	junction_10	472.143538196974	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAGCCAATAGTTCTT	NA	False	NA	7	True	AATATA	-9	NA	69691962	69701847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701024_69701178_69701465
ENSMUSG00000068917.13_1	chr3	+	2132	13	NIC	ENSMUSG00000068917.13	novel	2128	13	NA	NA	-1	1	combination_of_known_junctions	FALSE	canonical	3	115	junction_2	130.727664333997	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCCCCCAATCCCTGGAA	NA	False	NA	17	True	AATAAA	-18	NA	89072122	89084227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89072414_89074341_89074512_89076004_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ENSMUSG00000068917.13_10	chr3	+	1837	12	ISM	ENSMUSG00000068917.13	ENSMUST00000121212.9	2154	13	23	952	0	-2	5prime_fragment	FALSE	canonical	3	173	junction_3	109.540211115552	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACTTTACACTTTAATGT	NA	False	NA	3	True	AATAAA	-17	NA	89072124	89083276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951
ENSMUSG00000068917.13_11	chr3	+	2123	13	FSM	ENSMUSG00000068917.13	ENSMUST00000090927.12	2128	13	4	1	3	1	multi-exon	FALSE	canonical	3	115	junction_2	141.611043001596	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCCCCCAATCCCTGGAA	NA	False	NA	17	True	AATAAA	-18	NA	89072128	89084227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89072414_89074341_89074512_89076004_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ENSMUSG00000068917.13_12	chr3	+	3169	11	FSM	ENSMUSG00000068917.13	ENSMUST00000138822.8	3168	11	0	-1	0	1	multi-exon	FALSE	canonical	3	370	junction_2	65.9302661908778	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCCCCCAATCCCTGGAA	NA	False	NA	17	True	AATAAA	-18	NA	89072125	89084227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89072414_89074341_89074512_89076001_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ENSMUSG00000068917.13_14	chr3	+	1832	12	ISM	ENSMUSG00000068917.13	ENSMUST00000121931.8	2112	13	-21	959	0	-9	5prime_fragment	FALSE	canonical	3	250	junction_3	91.6433979984058	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCTTACACTTTACACT	NA	False	NA	-4	True	AATAAA	-10	NA	89072125	89083269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951
ENSMUSG00000068917.13_2	chr3	+	2127	13	FSM	ENSMUSG00000068917.13	ENSMUST00000121212.9	2154	13	24	3	0	-1	multi-exon	FALSE	canonical	3	173	junction_3	106.020045274467	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCCCCCCAATCCCTGG	NA	False	NA	15	True	AATAAA	-16	NA	89072125	89084225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ENSMUSG00000068917.13_3	chr3	+	2128	13	FSM	ENSMUSG00000068917.13	ENSMUST00000121931.8	2112	13	-17	1	4	1	multi-exon	FALSE	canonical	3	250	junction_3	89.4627094877463	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCCCCCAATCCCTGGAA	NA	False	NA	17	True	AATAAA	-18	NA	89072129	89084227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ENSMUSG00000068917.13_32	chr3	+	2904	20	Fusion	ENSMUSG00000028049.16_ENSMUSG00000068917.13	novel	2112	13	NA	NA	-1	-6	multi-exon	FALSE	canonical	3	36	junction_12	330.503695169624	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGAACTCACCCATTTC	NA	False	NA	10	True	ATTAAA	-14	NA	89072122	89090064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ENSMUSG00000068917.13_9	chr3	+	2035	12	FSM	ENSMUSG00000068917.13	ENSMUST00000128318.8	1885	12	-151	1	9	1	multi-exon	FALSE	canonical	3	39	junction_3	144.088987655672	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCCCCCAATCCCTGGAA	NA	False	NA	17	True	AATAAA	-18	NA	89072134	89084227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ENSMUSG00000068921.15_1	chr3	-	1484	13	FSM	ENSMUSG00000068921.15	ENSMUST00000090938.11	4760	13	443	2833	-20	-1	multi-exon	FALSE	canonical	3	805	junction_4	46.7537134591705	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGTATTGGATTTGCA	NA	False	NA	-8	True	ATTAAA	-16	NA	88857278	88830942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUSG00000068921.15_2	chr3	-	1320	12	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	-15	-1	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	248.823878102664	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGTATTGGATTTGCA	NA	False	NA	-8	True	ATTAAA	-16	NA	88857273	88830942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUSG00000068921.15_3	chr3	-	1390	12	FSM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	-16	1	-16	-1	multi-exon	FALSE	canonical	3	33	junction_2	248.490151458566	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGTATTGGATTTGCA	NA	False	NA	-8	True	ATTAAA	-16	NA	88857274	88830942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88831221_88832600_88832719_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUSG00000068922.15_12	chr3	-	1757	14	NNC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	215	junction_1	142.181149559078	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCAGTGTGTAGGGACCT	NA	False	NA	-36	True	AATAAA	-15	NA	88821220	88816950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_88817215_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
ENSMUSG00000068922.15_7	chr3	-	1755	14	FSM	ENSMUSG00000068922.15	ENSMUST00000126245.2	1875	14	90	30	-6	-1	multi-exon	FALSE	canonical	3	676	junction_13	37.3331396162909	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCCAGTGTGTAGGGACC	NA	False	NA	-37	True	AATAAA	-14	NA	88821216	88816951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
ENSMUSG00000068923.15_0	chr3	-	1662	3	ISM	ENSMUSG00000068923.15	ENSMUST00000090945.5	4567	4	10782	1864	567	907	3prime_fragment	FALSE	canonical	1	2	junction_1	4.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88669124	88653871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88655318_88656085_88656210_88669032
ENSMUSG00000068923.15_1	chr3	-	2662	4	FSM	ENSMUSG00000068923.15	ENSMUST00000090945.5	4567	4	41	1864	41	907	multi-exon	FALSE	canonical	1	1	junction_3	4.49691252107735	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88679865	88653871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88655318_88656085_88656210_88669032_88669857_88679597
ENSMUSG00000068923.15_3	chr3	-	152	1	ISM	ENSMUSG00000068923.15	ENSMUST00000107503.8	3575	3	7192	8	7192	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGCACAGTGCTACAG	1016	False	NA	-14	True	AATAAA	-15	NA	88652166	88652014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88652000_88652200
ENSMUSG00000068959.7_1	chr7	+	5966	4	FSM	ENSMUSG00000068959.7	ENSMUST00000108015.4	5969	4	-4	7	-4	-7	multi-exon	FALSE	canonical	2	4	junction_3	2.94392028877595	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAAATTGTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	39167185	39189837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_39167289_39183216_39183344_39183538_39183600_39184162
ENSMUSG00000068959.7_3	chr7	+	4609	1	ISM	ENSMUSG00000068959.7	ENSMUST00000108015.4	5969	4	17820	226	17820	-226	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAATGGTCCTATCTGTA	NA	False	NA	NA	False	NA	NA	NA	39185009	39189618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_39185000_39189600
ENSMUSG00000068962.8_0	chr7	+	2346	4	FSM	ENSMUSG00000068962.8	ENSMUST00000205309.2	1037	4	-17	-1292	-17	108	multi-exon	FALSE	canonical	2	5	junction_1	13.589211407093	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATGCCTCAGTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	23874467	23881851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_23874575_23875533_23875592_23877174_23877302_23879797
ENSMUSG00000068962.8_2	chr7	+	3291	3	FSM	ENSMUSG00000068962.8	ENSMUST00000206547.2	3154	3	-27	-110	-1	110	multi-exon	FALSE	canonical	2	10	junction_2	13	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGCCTCAGTTTAAAAAG	NA	False	NA	NA	False	NA	NA	NA	23874483	23881853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_23875592_23877174_23877302_23879797
ENSMUSG00000068966.11_1	chr2	-	6594	3	FSM	ENSMUSG00000068966.11	ENSMUST00000113158.8	6602	3	0	8	0	-8	multi-exon	FALSE	canonical	3	36	junction_2	5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCAACCTTGCTGTGGTC	NA	False	NA	-8	True	AATAAA	-39	NA	33321336	33296127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_33302508_33318112_33318233_33321242
ENSMUSG00000068966.11_2	chr2	-	3647	1	ISM	ENSMUSG00000068966.11	ENSMUST00000091037.3	6510	2	18462	6	18462	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAACCTTGCTGTGGTCTC	5071	False	NA	-6	True	AATAAA	-41	NA	33299772	33296125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_33296100_33299800
ENSMUSG00000068966.11_3	chr2	-	6469	2	FSM	ENSMUSG00000068966.11	ENSMUST00000134589.2	664	2	-2	-5803	-2	-8	multi-exon	FALSE	canonical	3	85	junction_1	0	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCAACCTTGCTGTGGTC	NA	False	NA	-8	True	AATAAA	-39	NA	33321331	33296127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_33302508_33321242
ENSMUSG00000069008.4_0	chr3	-	1714	1	FSM	ENSMUSG00000069008.4	ENSMUST00000091117.4	1252	1	-44	-418	-44	418	mono-exon	FALSE	NA	NA	NA	NA	NA	378	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATGGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58011712	58009998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_58010000_58011700
ENSMUSG00000069014.5_0	chr3	+	1509	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	-23	2	-23	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3061	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	5417	False	NA	NA	False	NA	NA	NA	54388835	54390344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_54388800_54390300
ENSMUSG00000069020.10_10	chr2	+	1289	6	FSM	ENSMUSG00000069020.10	ENSMUST00000147325.2	681	6	31	-639	-3	-4	multi-exon	FALSE	canonical	3	23	junction_3	146.238708965855	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGGTTGTTTACTAGCCT	NA	False	NA	10	True	AATAAA	-12	NA	29717403	29734072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732473_29732559_29732732_29732782_29733114
ENSMUSG00000069020.10_24	chr2	+	608	1	ISM	ENSMUSG00000069020.10	ENSMUST00000091142.4	2196	5	16113	940	1807	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTGTTTACTAGCCTTG	9438	False	NA	12	True	AATAAA	-14	NA	29733466	29734074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_29733500_29734100
ENSMUSG00000069020.10_3	chr2	+	1210	5	FSM	ENSMUSG00000069020.10	ENSMUST00000091142.4	2196	5	44	942	-9	-4	multi-exon	FALSE	canonical	3	254	junction_1	41.2158949921023	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGGTTGTTTACTAGCCT	NA	False	NA	10	True	AATAAA	-12	NA	29717397	29734072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732782_29733114
ENSMUSG00000069020.10_6	chr2	+	1206	5	NNC	ENSMUSG00000069020.10	novel	2196	5	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	141.749779541275	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGGTTGTTTACTAGCCT	NA	False	NA	10	True	AATAAA	-12	NA	29717400	29734072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732781_29733114
ENSMUSG00000069041.9_0	chr3	+	1589	6	FSM	ENSMUSG00000069041.9	ENSMUST00000091184.9	2128	6	29	510	29	-510	multi-exon	FALSE	canonical	3	17	junction_3	1.93907194296653	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTATTGTAATGAGCCT	NA	False	NA	NA	False	AATAAA	-9	NA	40663313	40680017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_40663657_40670945_40671074_40674920_40675039_40675936_40676092_40677055_40677182_40679298
ENSMUSG00000069072.10_0	chr3	-	180	1	ISM	ENSMUSG00000069072.10	ENSMUST00000091259.9	8897	8	103966	3375	51982	-3375	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATGCATGTGCT	NA	False	NA	NA	False	NA	NA	NA	31260561	31260381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_31260400_31260600
ENSMUSG00000069083.5_0	chr3	-	1967	1	FSM	ENSMUSG00000069083.5	ENSMUST00000091289.5	1590	1	-126	-251	-126	251	mono-exon	FALSE	NA	NA	NA	NA	NA	2008	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATGTGAT	NA	False	NA	NA	False	AATAAA	-20	NA	25266895	25264928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_25264900_25266900
ENSMUSG00000069089.9_0	chr13	-	1268	12	FSM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	34	686	-5	-7	multi-exon	FALSE	canonical	3	644	junction_3	44.8636133370117	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATATTTGTGATTTATG	NA	False	NA	-36	True	ATTAAA	-12	NA	100867413	100839824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ENSMUSG00000069089.9_6	chr13	-	1291	11	ISM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	266	687	227	-8	3prime_fragment	FALSE	canonical	3	644	junction_3	46.9835077447395	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATATTTGTGATTTAT	NA	False	NA	-37	True	ATTAAA	-11	NA	100867181	100839825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965
ENSMUSG00000069094.13_0	chr3	-	3372	13	FSM	ENSMUSG00000069094.13	ENSMUST00000099195.10	6298	13	-21	2947	-21	1330	multi-exon	FALSE	canonical	0	0	junction_2	44.9311201235353	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGTCTTTGCTCATTGGTT	NA	False	NA	-20	True	AATAAA	-2	NA	19365507	19280218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_19282006_19283851_19283933_19284419_19284517_19285120_19285266_19287263_19287356_19287839_19287972_19290076_19290178_19290607_19290704_19295309_19295374_19297213_19297366_19310941_19311026_19314395_19314457_19365027
ENSMUSG00000069094.13_1	chr3	-	3541	1	ISM	ENSMUSG00000069094.13	ENSMUST00000099195.10	6298	13	84667	7	3373	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAATATCAAAGTCTAC	9219	False	NA	NA	False	TATAAA	-16	NA	19280819	19277278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_19277300_19280800
ENSMUSG00000069094.13_16	chr3	-	3146	11	NIC	ENSMUSG00000069094.13	novel	6298	13	NA	NA	-11	1330	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	61.2409176939732	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGTCTTTGCTCATTGGTT	NA	False	NA	-20	True	AATAAA	-2	NA	19365497	19280218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_19282006_19283851_19283933_19284419_19284517_19285120_19285266_19287263_19287356_19287839_19287972_19290076_19290178_19290607_19290704_19310941_19311026_19314395_19314457_19365027
ENSMUSG00000069114.9_10	chr3	+	3322	1	ISM	ENSMUSG00000069114.9	ENSMUST00000155203.2	7414	6	31404	6	31404	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAACTGCTTCTGGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	9347065	9350387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_9347100_9350400
ENSMUSG00000069114.9_3	chr3	+	5591	6	FSM	ENSMUSG00000069114.9	ENSMUST00000155203.2	7414	6	57	1766	57	-1766	multi-exon	FALSE	canonical	3	53	junction_5	6.07947366142827	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAAACAGAATTGACAGAT	NA	False	NA	NA	False	ATTAAA	-25	NA	9315718	9348627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_9317141_9329594_9330481_9343313_9343413_9345015_9345193_9345350_9345524_9345793
ENSMUSG00000069114.9_4	chr3	+	3678	5	ISM	ENSMUSG00000069114.9	ENSMUST00000155203.2	7414	6	14422	1768	14422	-1768	3prime_fragment	FALSE	canonical	3	53	junction_4	6.37867541108654	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAGAAACAGAATTGACAG	NA	False	NA	NA	False	ATTAAA	-23	NA	9330083	9348625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_9330481_9343313_9343413_9345015_9345193_9345350_9345524_9345793
ENSMUSG00000069117.5_1	chr13	-	536	1	FSM	ENSMUSG00000069117.5	ENSMUST00000074072.5	561	1	3	22	3	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACCTATGGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-11	NA	97897137	97896601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_97896600_97897100
ENSMUSG00000069135.12_0	chr17	+	3042	12	FSM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	29	6	29	-6	multi-exon	FALSE	canonical	3	299	junction_6	38.250587420542	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCCATTTTACAGTGTT	NA	False	NA	24	True	AATAAA	-40	NA	8384400	8415301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
ENSMUSG00000069135.12_3	chr17	+	3101	13	FSM	ENSMUSG00000069135.12	ENSMUST00000097419.10	3505	13	68	336	29	-7	multi-exon	TRUE	canonical	3	46	junction_7	116.477107908235	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTCCATTTTACAGTGT	NA	False	NA	23	True	AATAAA	-39	NA	8384400	8415300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8394350_8394411_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
ENSMUSG00000069135.12_38	chr17	+	3714	6	ISM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	15466	9	-1241	-9	3prime_fragment	FALSE	canonical	3	323	junction_1	15.3362316101447	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATCCTCCATTTTACAGT	NA	False	NA	21	True	AATAAA	-37	NA	8399837	8415298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
ENSMUSG00000069135.12_46	chr17	+	1501	1	ISM	ENSMUSG00000069135.12	ENSMUST00000097419.10	3505	13	29468	335	12722	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCCATTTTACAGTGTT	NA	False	NA	24	True	AATAAA	-40	NA	8413800	8415301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_8413800_8415300
ENSMUSG00000069170.15_1	chr13	-	2431	11	ISM	ENSMUSG00000069170.15	ENSMUST00000126444.8	3823	19	-21	12587	-6	4277	5prime_fragment	FALSE	canonical	1	2	junction_1	15.4220621189256	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTTCGGGCATTTTTG	2351	False	NA	NA	False	AATAAA	-20	NA	81781279	81721277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_81721558_81723077_81723255_81726181_81726512_81726838_81727116_81727403_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
ENSMUSG00000069170.15_2	chr13	-	2600	9	FSM	ENSMUSG00000069170.15	ENSMUST00000128585.9	2580	9	-10	-10	5	10	multi-exon	FALSE	canonical	3	10	junction_1	12.4172259381876	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCACACAATTCACAGATT	2362	False	NA	NA	False	AATAAA	-7	NA	81781268	81725544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_81726512_81726838_81727116_81727403_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
ENSMUSG00000069170.15_7	chr13	-	1598	7	FSM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	-19	13	-6	-13	multi-exon	FALSE	canonical	3	24	junction_1	8.51958527942137	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTCCCTGTCATTTT	2351	False	NA	NA	False	AATAAA	-5	NA	81781279	81727172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
ENSMUSG00000069170.15_9	chr13	-	1117	6	ISM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	-20	2336	-7	-36	5prime_fragment	FALSE	canonical	3	24	junction_1	7.78716893357271	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACATCTGCTTATTATTTT	2350	False	NA	NA	False	TATAAA	-15	NA	81781280	81729495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
ENSMUSG00000069184.5_1	chr13	-	2608	5	FSM	ENSMUSG00000069184.5	ENSMUST00000223163.3	4153	5	14	1531	14	569	multi-exon	FALSE	canonical	3	29	junction_1	7.88590514779375	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTCAAGGAAACAGATAGCA	NA	False	NA	NA	False	AATAAA	-14	NA	74538941	74518975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74520947_74523086_74523183_74524554_74524682_74526730_74526986_74538782
ENSMUSG00000069184.5_12	chr13	-	2524	4	NIC	ENSMUSG00000069184.5	novel	4153	5	NA	NA	13	580	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	17.6823829464998	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATAGCAGATTTTACTTC	NA	False	NA	NA	False	AATAAA	-25	NA	74538942	74518964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_74520947_74524554_74524682_74526730_74526986_74538782
ENSMUSG00000069184.5_2	chr13	-	1930	1	ISM	ENSMUSG00000069184.5	ENSMUST00000223163.3	4153	5	18347	1234	4077	866	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAATCACTTTTTC	1885	False	NA	NA	False	NA	NA	NA	74520608	74518678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_74518700_74520600
ENSMUSG00000069184.5_4	chr13	-	2884	5	NNC	ENSMUSG00000069184.5	novel	4153	5	NA	NA	13	887	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	13.7181449183189	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAACTTTCGAAGTAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	74538942	74518657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_74520947_74523086_74523183_74524554_74524639_74526730_74526986_74538782
ENSMUSG00000069188.6_0	chr2	-	193	1	FSM	ENSMUSG00000069188.6	ENSMUST00000101199.3	208	1	92	-77	92	77	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATTAATAAATAAATAAAT	NA	False	NA	NA	False	AATAAA	-7	NA	4964471	4964278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_4964300_4964500
ENSMUSG00000069208.10_1	chr13	-	1517	5	FSM	ENSMUSG00000069208.10	ENSMUST00000221173.2	1549	5	31	1	9	-1	multi-exon	FALSE	canonical	3	27	junction_3	20.0546129356814	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	74642080	74628176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968
ENSMUSG00000069208.10_2	chr13	-	1393	4	FSM	ENSMUSG00000069208.10	ENSMUST00000202645.4	1406	4	9	4	9	-1	multi-exon	FALSE	canonical	3	29	junction_3	20.237478982214	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	74642080	74628176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74641968
ENSMUSG00000069208.10_3	chr13	-	2903	3	FSM	ENSMUSG00000069208.10	ENSMUST00000074369.7	822	3	51	-2132	51	1669	multi-exon	FALSE	canonical	3	60	junction_1	9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAAGTCCTGCTGTGAT	NA	False	NA	NA	False	AATAAA	-14	NA	74631011	74626503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74629270_74630657_74630719_74630935
ENSMUSG00000069208.10_5	chr13	-	1630	6	NNC	ENSMUSG00000069208.10	novel	1549	5	NA	NA	-186	-1	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	26.2022899762597	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	74642297	74628176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968_74642054_74642157
ENSMUSG00000069237.9_0	chr13	+	3695	5	FSM	ENSMUSG00000069237.9	ENSMUST00000099547.4	3664	5	-34	3	-34	-3	multi-exon	FALSE	canonical	3	172	junction_4	10.8972473588517	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAATGTCAACAGTGTTGT	NA	False	NA	4	True	AATAAA	-4	NA	46822963	46831529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_46823732_46824684_46824806_46827021_46827146_46827728_46827869_46828987
ENSMUSG00000069237.9_17	chr13	+	1853	1	ISM	ENSMUSG00000069237.9	ENSMUST00000099547.4	3664	5	6679	3	5010	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAATGTCAACAGTGTTGT	NA	False	NA	4	True	AATAAA	-4	NA	46829676	46831529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_46829700_46831500
ENSMUSG00000069255.14_1	chr13	+	3044	7	FSM	ENSMUSG00000069255.14	ENSMUST00000095914.7	3015	7	-41	12	-1	-12	multi-exon	FALSE	canonical	3	22	junction_6	5.61001089323561	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAAGCCTGACATCATGT	NA	False	NA	-3	True	AATAAA	-10	NA	30844042	30895202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_30844130_30852787_30852822_30856375_30856459_30880218_30880269_30889608_30889684_30891912_30892085_30892659
ENSMUSG00000069255.14_4	chr13	+	1620	1	NIC	ENSMUSG00000069255.14	novel	1161	8	NA	NA	49503	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTGACATCATGTGCAG	NA	False	NA	1	True	AATAAA	-14	NA	30893586	30895206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_30893600_30895200
ENSMUSG00000069255.14_6	chr13	+	1215	8	FSM	ENSMUSG00000069255.14	ENSMUST00000091672.13	1161	8	-62	8	-62	-8	multi-exon	FALSE	canonical	3	16	junction_7	7.4258236676383	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTGACATCATGTGCAG	NA	False	NA	1	True	AATAAA	-14	NA	30843919	30895206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_30844130_30852787_30852822_30856375_30856459_30880218_30880269_30889608_30889684_30891912_30892085_30892659_30892733_30894688
ENSMUSG00000069265.3_0	chr13	-	488	1	FSM	ENSMUSG00000069265.3	ENSMUST00000091701.3	534	1	13	33	13	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGATTTCAAGTAAAATGGC	NA	False	NA	NA	False	NA	NA	NA	23946356	23945868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23945900_23946400
ENSMUSG00000069266.6_0	chr13	+	396	1	FSM	ENSMUSG00000069266.6	ENSMUST00000102965.4	397	1	-23	24	-23	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGAATTCCTTAAAAAGCT	6264	False	NA	NA	False	ACTAAA	-45	NA	23940972	23941368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_23941000_23941400
ENSMUSG00000069267.3_0	chr13	+	491	1	FSM	ENSMUSG00000069267.3	ENSMUST00000091703.3	620	1	78	51	78	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCACAGTTTCTGTAAAAG	1619	False	NA	NA	False	NA	NA	NA	23936327	23936818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_23936300_23936800
ENSMUSG00000069270.7_0	chr13	-	1109	1	FSM	ENSMUSG00000069270.7	ENSMUST00000171127.4	2482	1	-12	1385	-12	-1385	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTGGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	23867943	23866834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23866800_23867900
ENSMUSG00000069272.7_0	chr13	-	626	1	FSM	ENSMUSG00000069272.7	ENSMUST00000102969.6	704	1	61	17	61	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTTTTTTCAGATTCATA	8875	False	NA	NA	False	AATAAA	-6	NA	23755333	23754707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23754700_23755300
ENSMUSG00000069300.4_0	chr13	+	455	1	FSM	ENSMUSG00000069300.4	ENSMUST00000110452.2	463	1	-15	23	-15	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGCACAATTTTTAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	22227368	22227823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_22227400_22227800
ENSMUSG00000069301.6_0	chr13	-	482	1	FSM	ENSMUSG00000069301.6	ENSMUST00000091741.6	485	1	-16	19	-16	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTTCCTAACAAGGGCT	NA	False	NA	0	True	NA	NA	NA	22227130	22226648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_22226600_22227100
ENSMUSG00000069303.8_1	chr13	+	456	1	NIC	ENSMUSG00000069303.8	novel	1256	2	NA	NA	1	-2466	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACTTTCAGCGTAAAAAG	NA	False	NA	NA	False	NA	NA	NA	22017913	22018369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_22017900_22018400
ENSMUSG00000069305.4_0	chr13	-	401	1	FSM	ENSMUSG00000069305.4	ENSMUST00000102979.2	430	1	0	29	0	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATTAATCCTCCAAAGGG	NA	False	NA	NA	False	ACTAAA	-19	NA	22016366	22015965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_22016000_22016400
ENSMUSG00000069307.8_2	chr13	-	453	1	NIC	ENSMUSG00000069307.8	novel	2015	3	NA	NA	3	-2465	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTTTCAGCGTAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	21994364	21993911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_21993900_21994400
ENSMUSG00000069310.5_0	chr13	-	481	1	FSM	ENSMUSG00000069310.5	ENSMUST00000091752.5	630	1	81	68	81	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTCATGTAAAGTTGCTG	4713	False	NA	-1	True	AAAAAG	-22	NA	23929504	23929023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23929000_23929500
ENSMUSG00000069324.7_0	chr18	+	1845	1	FSM	ENSMUSG00000069324.7	ENSMUST00000091776.7	1866	1	16	5	16	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCTTCAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	87774425	87776270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_87774400_87776300
ENSMUSG00000069495.13_0	chr2	+	3866	14	FSM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	43	788	43	-788	multi-exon	FALSE	canonical	2	3	junction_1	7.11943751517944	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAATACATATCAA	NA	False	NA	-11	True	NA	NA	NA	49341540	49441172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_49341971_49378700_49378861_49403226_49403373_49412482_49412690_49418859_49419009_49420022_49420156_49422055_49422248_49425266_49425357_49426587_49426737_49426836_49427181_49435720_49435858_49437457_49437618_49438442_49438777_49439937
ENSMUSG00000069495.13_10	chr2	+	1905	2	ISM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	96997	400	19608	-400	3prime_fragment	FALSE	canonical	3	21	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTGAACATAATTTTATA	NA	False	NA	-4	True	ATTAAA	-10	NA	49438494	49441560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49438777_49439937
ENSMUSG00000069495.13_11	chr2	+	1028	1	ISM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	98656	779	21267	-779	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATATCAAAACACGGCC	NA	False	NA	-2	True	AATAAA	-3	NA	49440153	49441181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49440200_49441200
ENSMUSG00000069495.13_12	chr2	+	686	1	ISM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	99752	25	22363	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAAAGCATGAAGTTAAT	NA	False	NA	-11	True	NA	NA	NA	49441249	49441935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49441200_49441900
ENSMUSG00000069495.13_14	chr2	+	3255	12	ISM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	61768	770	-15621	-770	3prime_fragment	FALSE	canonical	3	9	junction_5	5.71210111723819	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACGGCCATGCTGCAT	NA	False	NA	7	True	AATAAA	-12	NA	49403265	49441190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49403373_49412482_49412690_49418859_49419009_49420022_49420156_49422055_49422248_49425266_49425357_49426587_49426737_49426836_49427181_49435720_49435858_49437457_49437618_49438442_49438777_49439937
ENSMUSG00000069495.13_17	chr2	+	2323	6	ISM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	85139	775	7750	-775	3prime_fragment	FALSE	canonical	3	20	junction_3	4.31740662898458	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATCAAAACACGGCCATGC	NA	False	NA	2	True	AATAAA	-7	NA	49426636	49441185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49426737_49426836_49427181_49435720_49435858_49437457_49437618_49438442_49438777_49439937
ENSMUSG00000069495.13_3	chr2	+	4207	13	ISM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	37202	18	37202	-18	3prime_fragment	FALSE	canonical	2	9	junction_1	6.11634876558084	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGAAGTTAATTTGCCTT	NA	False	NA	-4	True	AGTAAA	-1	NA	49378699	49441942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49378861_49403226_49403373_49412482_49412690_49418859_49419009_49420022_49420156_49422055_49422248_49425266_49425357_49426587_49426737_49426836_49427181_49435720_49435858_49437457_49437618_49438442_49438777_49439937
ENSMUSG00000069495.13_4	chr2	+	3084	11	ISM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	71031	788	-6358	-788	3prime_fragment	FALSE	canonical	3	9	junction_4	5.8489315263559	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAATACATATCAA	NA	False	NA	-11	True	NA	NA	NA	49412528	49441172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49412690_49418859_49419009_49420022_49420156_49422055_49422248_49425266_49425357_49426587_49426737_49426836_49427181_49435720_49435858_49437457_49437618_49438442_49438777_49439937
ENSMUSG00000069495.13_6	chr2	+	2754	9	ISM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	78545	788	1156	-788	3prime_fragment	FALSE	canonical	3	9	junction_2	6.06088896120033	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAATACATATCAA	NA	False	NA	-11	True	NA	NA	NA	49420042	49441172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49420156_49422055_49422248_49425266_49425357_49426587_49426737_49426836_49427181_49435720_49435858_49437457_49437618_49438442_49438777_49439937
ENSMUSG00000069495.13_7	chr2	+	2957	8	ISM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	80630	400	3241	-400	3prime_fragment	FALSE	canonical	3	9	junction_1	6.23354977979184	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTGAACATAATTTTATA	NA	False	NA	-4	True	ATTAAA	-10	NA	49422127	49441560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49422248_49425266_49425357_49426587_49426737_49426836_49427181_49435720_49435858_49437457_49437618_49438442_49438777_49439937
ENSMUSG00000069495.13_9	chr2	+	1852	4	ISM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	94255	770	16866	-770	3prime_fragment	FALSE	canonical	3	20	junction_1	5.43650214343336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACGGCCATGCTGCAT	NA	False	NA	7	True	AATAAA	-12	NA	49435752	49441190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_49435858_49437457_49437618_49438442_49438777_49439937
ENSMUSG00000069520.7_10	chr10	-	4904	5	ISM	ENSMUSG00000069520.7	ENSMUST00000219890.2	2949	7	193	5	-69	-5	intron_retention	FALSE	canonical	3	189	junction_4	18.07449860992	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAAGACTTGTTTTGT	NA	False	NA	-9	True	TATAAA	-14	NA	115197936	115176651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558
ENSMUSG00000069520.7_15	chr10	-	2846	7	NIC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	-7	-5	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	66.9842435867487	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAAGACTTGTTTTGT	NA	False	NA	-9	True	TATAAA	-14	NA	115198109	115176651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197811_115197865_115197956
ENSMUSG00000069520.7_4	chr10	-	2964	7	FSM	ENSMUSG00000069520.7	ENSMUST00000092170.7	3012	7	48	0	5	0	multi-exon	FALSE	canonical	3	182	junction_6	17.9017379665278	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198124	115176646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
ENSMUSG00000069520.7_5	chr10	-	3037	6	FSM	ENSMUSG00000069520.7	ENSMUST00000217887.2	3084	6	46	1	-4	-1	multi-exon	FALSE	canonical	3	189	junction_4	16.3291151015602	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGACTTGTTTTGTTTTT	NA	False	NA	-5	True	TATAAA	-18	NA	115198106	115176647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713
ENSMUSG00000069520.7_6	chr10	-	1831	8	NNC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	63.4967458590901	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198125	115176646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_115177245_115178378_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
ENSMUSG00000069520.7_7	chr10	-	2916	7	NIC	ENSMUSG00000069520.7	novel	2799	7	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	71.1213751273132	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGACTTGTTTTGTTTTT	NA	False	NA	-5	True	TATAAA	-18	NA	115198412	115176647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115198291
ENSMUSG00000069520.7_8	chr10	-	2957	7	NIC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_6	68.9365650435239	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198130	115176646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197969
ENSMUSG00000069539.12_5	chr10	-	3954	18	FSM	ENSMUSG00000069539.12	ENSMUST00000174252.8	4817	18	18	845	1	103	multi-exon	FALSE	canonical	2	10	junction_2	5.88058797050879	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATATTGTTTCAAGTATAG	NA	False	NA	NA	False	AATAAA	-16	NA	89522129	89475427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_89476979_89477852_89477973_89481323_89481420_89481538_89481606_89482620_89482722_89485826_89485946_89486689_89486823_89488804_89488919_89489965_89490089_89492569_89492747_89493671_89493798_89495100_89495218_89495996_89496219_89498177_89498328_89502578_89502724_89505506_89505665_89514139_89514345_89521899
ENSMUSG00000069539.12_7	chr10	-	3431	18	FSM	ENSMUSG00000069539.12	ENSMUST00000092227.12	3566	18	-17	152	0	-152	multi-exon	FALSE	canonical	2	10	junction_2	5.88058797050879	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCCACCTGGTACCTGC	NA	False	NA	NA	False	ATTAAA	-23	NA	89522147	89475965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_89476979_89477852_89477973_89481323_89481417_89481538_89481606_89482620_89482722_89485826_89485946_89486689_89486823_89488804_89488919_89489965_89490089_89492569_89492747_89493671_89493798_89495100_89495218_89495996_89496219_89498177_89498328_89502578_89502724_89505506_89505665_89514139_89514345_89521899
ENSMUSG00000069565.13_6	chr10	+	2040	12	FSM	ENSMUSG00000069565.13	ENSMUST00000105362.8	2081	12	34	7	2	-7	multi-exon	FALSE	canonical	3	848	junction_9	77.3423216017195	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAACCTGAGTGCTGTC	NA	False	NA	5	True	AATAAA	-14	NA	80100851	80124235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
ENSMUSG00000069565.13_7	chr10	+	2041	12	FSM	ENSMUSG00000069565.13	ENSMUST00000105361.10	1537	12	4	-508	4	-7	multi-exon	FALSE	canonical	3	55	junction_11	285.507146282737	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAACCTGAGTGCTGTC	NA	False	NA	5	True	AATAAA	-14	NA	80100853	80124235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123369
ENSMUSG00000069565.13_8	chr10	+	2043	12	FSM	ENSMUSG00000069565.13	ENSMUST00000092305.6	1994	12	-56	7	2	-7	multi-exon	FALSE	canonical	3	126	junction_4	263.9061002555	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAACCTGAGTGCTGTC	NA	False	NA	5	True	AATAAA	-14	NA	80100851	80124235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113405_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
ENSMUSG00000069581.13_0	chr10	+	2161	10	FSM	ENSMUSG00000069581.13	ENSMUST00000092368.10	2169	10	10	-2	10	2	multi-exon	FALSE	canonical	0	0	junction_2	2.43938871112224	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATACATGGATGGTA	NA	False	NA	NA	False	NA	NA	NA	77700466	77722857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_77700717_77702113_77702205_77703505_77703663_77705396_77705529_77706156_77706384_77708927_77709115_77710718_77710949_77716895_77717084_77719274_77719377_77722260
ENSMUSG00000069601.15_1	chr10	+	3767	19	ISM	ENSMUSG00000069601.15	ENSMUST00000092433.12	5072	20	333	9150	46	-1	5prime_fragment	FALSE	canonical	3	43	junction_16	15.6307705393663	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGAATGCAGATGTATAT	NA	False	NA	14	True	AATAAA	-19	NA	69761694	69851634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69837752_69838432_69840439_69840822_69851397
ENSMUSG00000069601.15_10	chr10	+	4574	20	NIC	ENSMUSG00000069601.15	novel	3751	20	NA	NA	42	422	combination_of_known_junctions	FALSE	canonical	3	13	junction_18	20.5534233960282	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTACTTGGGTTCCACAGT	NA	False	NA	31	True	AATAAA	-17	NA	69761690	69861206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851400_69851484_69859661
ENSMUSG00000069601.15_11	chr10	+	3718	16	ISM	ENSMUSG00000069601.15	ENSMUST00000182029.8	3825	19	59	15059	45	1043	5prime_fragment	FALSE	canonical	3	68	junction_4	11.2853887837327	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTAGCGCAATGTTGTG	NA	False	NA	NA	False	ATTAAA	-24	NA	69761693	69836576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184
ENSMUSG00000069601.15_16	chr10	+	4616	21	NIC	ENSMUSG00000069601.15	novel	3751	20	NA	NA	34	420	combination_of_known_junctions	FALSE	canonical	3	8	junction_4	26.6857171535636	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTACTTGGGTTCCACA	NA	False	NA	29	True	AATAAA	-15	NA	69761682	69861204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69789269_69789303_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397_69851484_69859661
ENSMUSG00000069601.15_2	chr10	+	4266	20	FSM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	-92	-423	43	112	multi-exon	FALSE	canonical	3	64	junction_16	12.5742118370934	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGACAA	NA	False	NA	NA	False	NA	NA	NA	69761691	69860896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397_69851484_69859661
ENSMUSG00000069601.15_4	chr10	+	5169	20	FSM	ENSMUSG00000069601.15	ENSMUST00000092433.12	5072	20	321	-418	34	418	multi-exon	FALSE	canonical	3	43	junction_16	15.2197204046814	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCTACTTGGGTTCCA	NA	False	NA	27	True	AATAAA	-13	NA	69761682	69861202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69837752_69838432_69840439_69840822_69851397_69851484_69859661
ENSMUSG00000069601.15_6	chr10	+	3203	19	ISM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	-113	8839	22	-1	5prime_fragment	FALSE	canonical	3	64	junction_16	12.9177120246047	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGAATGCAGATGTATAT	NA	False	NA	14	True	AATAAA	-19	NA	69761670	69851634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397
ENSMUSG00000069622.6_0	chr10	+	1090	1	FSM	ENSMUSG00000069622.6	ENSMUST00000092511.6	630	1	-102	-358	-102	358	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAACAGAAAAAAAAAAAA	1400	False	NA	NA	False	TTTAAA	-44	NA	59231474	59232564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_59231500_59232600
ENSMUSG00000069631.15_0	chr11	-	2049	11	NIC	ENSMUSG00000069631.15	novel	2099	13	NA	NA	-10	3	combination_of_known_splicesites	TRUE	canonical	3	51	junction_9	25.5305699113827	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAATGGCACCAGTGTTT	NA	False	NA	-10	True	ATTAAA	-16	NA	106084375	106054152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077926_106078007_106084291
ENSMUSG00000069631.15_1	chr11	-	2032	11	FSM	ENSMUSG00000069631.15	ENSMUST00000103072.10	1517	11	3	-518	3	0	multi-exon	FALSE	canonical	3	87	junction_9	16.6340013225922	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGGAATGGCACCAGTG	NA	False	NA	-13	True	ATTAAA	-13	NA	106084385	106054155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077950_106078007_106084291
ENSMUSG00000069631.15_11	chr11	-	1914	10	NIC	ENSMUSG00000069631.15	novel	1517	11	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	39.0520387226462	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTGGGAATGGCACCAG	NA	False	NA	-15	True	ATTAAA	-11	NA	106084393	106054157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061981_106062091_106064078_106064201_106064504_106064608_106077950_106078007_106084291
ENSMUSG00000069631.15_12	chr11	-	2066	12	NIC	ENSMUSG00000069631.15	novel	2099	13	NA	NA	23	-2	combination_of_known_splicesites	FALSE	canonical	2	7	junction_9	47.5345894069008	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTGGGAATGGCACCAG	NA	False	NA	-15	True	ATTAAA	-11	NA	106084339	106054157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106075387_106075446_106077926_106078007_106084291
ENSMUSG00000069631.15_19	chr11	-	1886	9	ISM	ENSMUSG00000069631.15	ENSMUST00000007444.14	2099	13	19753	-23	19753	2	3prime_fragment	FALSE	canonical	3	107	junction_6	12.8980376414399	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGAATGGCACCAGTGTT	1329	False	NA	-11	True	ATTAAA	-15	NA	106064609	106054153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504
ENSMUSG00000069631.15_21	chr11	-	4048	2	FSM	ENSMUSG00000069631.15	ENSMUST00000106867.2	3386	2	29	-691	-4	691	multi-exon	FALSE	canonical	3	125	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106084369	106074036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106078007_106084291
ENSMUSG00000069631.15_22	chr11	-	3403	1	FSM	ENSMUSG00002076211.1	ENSMUST00020182016.1	144	1	-26	-3233	-26	3233	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	6711	False	NA	NA	False	NA	NA	NA	106077439	106074036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106074000_106077400
ENSMUSG00000069633.13_1	chr8	-	1124	5	FSM	ENSMUSG00000069633.13	ENSMUST00000004686.13	2870	5	33	1713	-2	-1710	multi-exon	FALSE	canonical	3	21	junction_1	4.14578098794425	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGTGTGTGCATGAGGT	NA	False	NA	-3	True	ATTAAA	-15	NA	3517647	3508817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_3509435_3510271_3510335_3513921_3514101_3515782_3515972_3517571
ENSMUSG00000069662.6_0	chr10	-	2599	2	FSM	ENSMUSG00000069662.6	ENSMUST00000092584.6	4048	2	2	1447	2	-1447	multi-exon	FALSE	canonical	3	339	junction_1	0	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAATTTGTTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	37014914	37010817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_37012932_37014429
ENSMUSG00000069662.6_1	chr10	-	1584	1	ISM	ENSMUSG00000069662.6	ENSMUST00000092584.6	4048	2	2516	1446	2516	-1446	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAATTTGTTGTGTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	37012400	37010816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_37010800_37012400
ENSMUSG00000069678.11_11	chr6	+	891	9	FSM	ENSMUSG00000069678.11	ENSMUST00000092614.9	866	9	-25	0	19	0	multi-exon	FALSE	canonical	3	163	junction_1	14.5408906192159	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACTTTTCATCTTC	125	False	NA	16	True	AATAAA	-8	NA	83055345	83057828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ENSMUSG00000069678.11_15	chr6	+	2487	1	NIC	ENSMUSG00000069678.11	novel	918	9	NA	NA	15	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACTTTTCATCTTC	121	False	NA	16	True	AATAAA	-8	NA	83055341	83057828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83055300_83057800
ENSMUSG00000069678.11_20	chr6	+	1912	12	NNC	ENSMUSG00000069678.11	novel	866	9	NA	NA	-6498	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	80.471646872754	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACTTTTCATCTTC	9072	False	NA	16	True	AATAAA	-8	NA	83048351	83057828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_83048437_83049218_83049526_83054554_83055220_83055381_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ENSMUSG00000069678.11_23	chr6	+	973	8	ISM	ENSMUSG00000069678.11	ENSMUST00000165164.9	918	9	16	8	16	0	intron_retention	FALSE	canonical	3	163	junction_1	15.5366584277972	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACTTTTCATCTTC	122	False	NA	16	True	AATAAA	-8	NA	83055342	83057828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530
ENSMUSG00000069678.11_8	chr6	+	1048	8	ISM	ENSMUSG00000069678.11	ENSMUST00000092614.9	866	9	234	0	-6	0	3prime_fragment	FALSE	canonical	3	182	junction_2	10.5521058929254	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACTTTTCATCTTC	95	False	NA	16	True	AATAAA	-8	NA	83055604	83057828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ENSMUSG00000069678.11_9	chr6	+	3190	10	NIC	ENSMUSG00000069678.11	novel	866	9	NA	NA	-1965	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	54.0160012872272	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACTTTTCATCTTC	1607	False	NA	16	True	AATAAA	-8	NA	83052884	83057828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83055220_83055381_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ENSMUSG00000069682.7_0	chr10	-	622	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	9	4	9	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	565	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGTGGAAAAAAAAAATCAAT	NA	False	NA	-12	True	AATAAA	-17	NA	29575367	29574745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_29574700_29575400
ENSMUSG00000069727.6_2	chr7	-	3178	4	FSM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	-36	6	-12	-6	multi-exon	FALSE	canonical	3	231	junction_3	55.1784982277215	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAACCTGGCGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	42342178	42309534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_42312421_42314181_42314243_42314441_42314569_42342074
ENSMUSG00000069727.6_3	chr7	-	3050	3	NIC	ENSMUSG00000069727.6	novel	3148	4	NA	NA	-10	-5	combination_of_known_splicesites	FALSE	canonical	3	30	junction_2	158	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAACCTGGCGTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	42342176	42309533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_42312421_42314181_42314243_42342074
ENSMUSG00000069727.6_4	chr7	-	1979	1	ISM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	30629	6	30629	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAACCTGGCGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	42311513	42309534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_42309500_42311500
ENSMUSG00000069729.15_19	chr17	+	5666	13	ISM	ENSMUSG00000069729.15	ENSMUST00000232180.2	7309	20	296140	-1013	250501	1013	3prime_fragment	FALSE	canonical	3	55	junction_11	8.5289539543578	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCACTGTGATGGGTGTTC	4676	False	NA	8	True	AATAAA	-19	NA	5341353	5394793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_5341559_5356023_5356170_5362109_5362220_5364148_5364308_5368915_5369126_5371547_5371753_5377550_5377690_5377923_5378097_5382761_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
ENSMUSG00000069729.15_2	chr17	+	7197	20	FSM	ENSMUSG00000069729.15	ENSMUST00000232180.2	7309	20	984	-872	-498	872	multi-exon	FALSE	canonical	3	53	junction_5	8.75742660692188	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	5046197	5394652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_5046768_5090854_5091050_5147848_5148008_5177188_5177300_5293102_5293347_5314306_5314397_5329477_5329658_5341230_5341559_5356023_5356170_5362109_5362220_5364148_5364308_5368915_5369126_5371547_5371753_5377550_5377690_5377923_5378097_5382761_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
ENSMUSG00000069729.15_21	chr17	+	5102	10	ISM	ENSMUSG00000069729.15	ENSMUST00000232180.2	7309	20	319034	-1009	273395	1009	3prime_fragment	FALSE	canonical	3	55	junction_8	8.42541716005728	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACGCACTGTGATGGGT	NA	False	NA	4	True	AATAAA	-15	NA	5364247	5394789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_5364308_5368915_5369126_5371547_5371753_5377550_5377690_5377923_5378097_5382761_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
ENSMUSG00000069729.15_22	chr17	+	4760	9	ISM	ENSMUSG00000069729.15	ENSMUST00000092723.11	7150	19	323847	-872	278208	872	3prime_fragment	FALSE	canonical	3	55	junction_7	8.80252094572913	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	5369060	5394652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_5369126_5371547_5371753_5377550_5377690_5377923_5378097_5382761_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
ENSMUSG00000069729.15_23	chr17	+	4696	8	ISM	ENSMUSG00000069729.15	ENSMUST00000092723.11	7150	19	326466	-1005	280827	1005	3prime_fragment	FALSE	canonical	3	55	junction_6	9.36123138594622	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGTTACGCACTGTGAT	NA	False	NA	0	True	AATAAA	-11	NA	5371679	5394785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_5371753_5377550_5377690_5377923_5378097_5382761_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
ENSMUSG00000069729.15_25	chr17	+	4321	6	ISM	ENSMUSG00000069729.15	ENSMUST00000092723.11	7150	19	332740	-872	287101	872	3prime_fragment	FALSE	canonical	3	55	junction_4	10.3266645147405	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	5377953	5394652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_5378097_5382761_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
ENSMUSG00000069729.15_26	chr17	+	4119	5	ISM	ENSMUSG00000069729.15	ENSMUST00000092723.11	7150	19	337607	-872	291968	872	3prime_fragment	FALSE	canonical	3	55	junction_3	9.90896059130321	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	5382820	5394652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
ENSMUSG00000069729.15_28	chr17	+	3692	3	ISM	ENSMUSG00000069729.15	ENSMUST00000092723.11	7150	19	341965	-1013	296326	1013	3prime_fragment	FALSE	canonical	3	55	junction_1	2	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCACTGTGATGGGTGTTC	NA	False	NA	8	True	AATAAA	-19	NA	5387178	5394793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_5387584_5389490_5389622_5391637
ENSMUSG00000069729.15_29	chr17	+	2853	1	ISM	ENSMUSG00000069729.15	ENSMUST00000115797.9	11325	20	346592	3138	301088	1013	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCACTGTGATGGGTGTTC	NA	False	NA	8	True	AATAAA	-19	NA	5391940	5394793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_5391900_5394800
ENSMUSG00000069729.15_6	chr17	+	7198	19	NIC	ENSMUSG00000069729.15	novel	11325	20	NA	NA	-519	1011	combination_of_known_splicesites	FALSE	canonical	1	10	junction_2	15.6781872534919	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACGCACTGTGATGGGTGT	NA	False	NA	6	True	AATAAA	-17	NA	5046176	5394791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_5046768_5090854_5091050_5177188_5177300_5293102_5293347_5314306_5314397_5329477_5329658_5341230_5341559_5356023_5356170_5362109_5362220_5364148_5364308_5368915_5369126_5371547_5371753_5377550_5377690_5377923_5378097_5382761_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
ENSMUSG00000069729.15_9	chr17	+	5850	19	NIC	ENSMUSG00000069729.15	novel	7309	20	NA	NA	-462	-259	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	17.5682970639842	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAGTTATAAAATTAATAT	NA	False	NA	NA	False	ATTAAA	-12	NA	5046233	5393521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_5046768_5090854_5091050_5147848_5148008_5177188_5177300_5293102_5293347_5314306_5314397_5341230_5341559_5356023_5356170_5362109_5362220_5364148_5364308_5368915_5369126_5371547_5371753_5377550_5377690_5377923_5378097_5382761_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
ENSMUSG00000069743.6_1	chr17	-	3690	5	FSM	ENSMUSG00000069743.6	ENSMUST00000084141.6	3686	5	3	-7	3	7	multi-exon	FALSE	canonical	3	21	junction_3	11.3880419739304	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAACTTGGTTGTGCTCAAT	NA	False	NA	-5	True	NA	NA	NA	22064737	22035858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_22039170_22040050_22040178_22042824_22042873_22059604_22059696_22064624
ENSMUSG00000069743.6_10	chr17	-	3588	4	NIC	ENSMUSG00000069743.6	novel	3686	5	NA	NA	8	1	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	20.6774165590278	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCGAACTTGGTTGTG	NA	False	NA	-11	True	NA	NA	NA	22064732	22035864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_22039170_22040050_22040178_22042824_22042873_22064624
ENSMUSG00000069743.6_5	chr17	-	3829	6	NNC	ENSMUSG00000069743.6	novel	3686	5	NA	NA	8	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	18.7360614858086	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCGAACTTGGTTGTGCT	NA	False	NA	-9	True	NA	NA	NA	22064732	22035862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_22039170_22040050_22040178_22042824_22042873_22059604_22059696_22063404_22063553_22064624
ENSMUSG00000069743.6_8	chr17	-	3692	5	FSM	ENSMUSG00000069743.6	ENSMUST00000232918.2	2735	5	33	-990	20	7	multi-exon	TRUE	canonical	3	6	junction_3	16.8077363139716	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAACTTGGTTGTGCTCAAT	NA	False	NA	-5	True	NA	NA	NA	22064720	22035858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_22039170_22040050_22040178_22042824_22042873_22059585_22059696_22064624
ENSMUSG00000069743.6_9	chr17	-	1565	1	Genic_Genomic	ENSMUSG00000069743.6	novel	NA	NA	NA	NA	27311	1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCGAACTTGGTTGTG	NA	False	NA	-11	True	NA	NA	NA	22037429	22035864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_22035900_22037400
ENSMUSG00000069744.8_0	chr11	+	729	6	FSM	ENSMUSG00000069744.8	ENSMUST00000103147.5	766	6	37	0	2	0	multi-exon	FALSE	canonical	3	3867	junction_2	170.920566345891	1200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGCCTGCCTTT	NA	False	NA	22	True	AATAAA	-15	NA	97594261	97604326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927_97602106_97603262_97603358_97604218
ENSMUSG00000069744.8_16	chr11	+	673	5	ISM	ENSMUSG00000069744.8	ENSMUST00000103147.5	766	6	390	0	355	0	3prime_fragment	FALSE	canonical	3	3867	junction_1	190.008552439094	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGCCTGCCTTT	NA	False	NA	22	True	AATAAA	-15	NA	97594614	97604326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97594799_97597623_97597732_97601927_97602106_97603262_97603358_97604218
ENSMUSG00000069755.6_0	chr12	-	1968	4	NIC	ENSMUSG00000069755.6	novel	704	5	NA	NA	101	1448	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	3.74165738677394	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTTTCATTTTCTAGACT	NA	False	NA	NA	False	NA	NA	NA	20971162	20925636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_20927097_20952270_20952332_20952533_20952661_20970842
ENSMUSG00000069755.6_1	chr12	-	1756	2	FSM	ENSMUSG00000085642.9	ENSMUST00000143905.2	881	2	-189	-686	-14	-101	multi-exon	FALSE	canonical	1	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCCATAAAATAAGTAAAGT	NA	False	NA	NA	False	AATAAA	-12	NA	20971243	20925741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_20927097_20970842
ENSMUSG00000069755.6_10	chr12	-	1856	6	FSM	ENSMUSG00000069755.6	ENSMUST00000208744.2	928	6	-8	-920	-8	920	multi-exon	FALSE	canonical	2	5	junction_1	1.49666295470958	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGCTGTCTCTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	20971271	20949823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_20950936_20952270_20952332_20952533_20952661_20964759_20964843_20965748_20965793_20970842
ENSMUSG00000069755.6_4	chr12	-	1306	1	Genic_Genomic	ENSMUSG00000069755.6	novel	NA	NA	NA	NA	3182	402	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGTATTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	20949478	20948172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_20948200_20949500
ENSMUSG00000069769.14_0	chr11	-	2742	1	ISM	ENSMUSG00000069769.14	ENSMUST00000107909.8	6436	14	376100	6	248018	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGACTTGTTTAGTGTTC	2292	False	NA	-7	True	AATAAA	-14	NA	88232955	88230213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_88230200_88233000
ENSMUSG00000069769.14_7	chr11	-	1737	14	FSM	ENSMUSG00000069769.14	ENSMUST00000107909.8	6436	14	122	4577	3	-70	multi-exon	FALSE	canonical	0	0	junction_9	5.72650848321069	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGACGGCCGTGTTTTGAG	2104	False	NA	NA	False	NA	NA	NA	88608933	88234784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_88235487_88237878_88237952_88239609_88239765_88257610_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831_88370881_88480880_88480974_88603263_88603306_88607335_88607421_88608115_88608198_88608530_88608572_88608854
ENSMUSG00000069793.13_1	chr11	-	5693	5	FSM	ENSMUSG00000069793.13	ENSMUST00000138797.2	2128	5	7	-3572	7	-22	multi-exon	FALSE	canonical	3	11	junction_4	14.1133801762724	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAGAAAGAAAACA	8627	False	NA	-28	True	NA	NA	NA	82881956	82869237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_82872813_82872979_82873704_82875382_82875518_82878064_82879135_82881767
ENSMUSG00000069793.13_10	chr11	-	4781	4	ISM	ENSMUSG00000069793.13	ENSMUST00000038211.13	5769	5	4245	22	3552	-22	3prime_fragment	FALSE	canonical	3	41	junction_1	2.05480466765633	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAGAAAGAAAACA	NA	False	NA	-28	True	NA	NA	NA	82878411	82869237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_82872813_82872979_82873704_82875382_82875518_82878064
ENSMUSG00000069793.13_2	chr11	-	2785	1	ISM	ENSMUSG00000069793.13	ENSMUST00000038211.13	5769	5	10634	22	9941	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAGAAAGAAAACA	NA	False	NA	-28	True	NA	NA	NA	82872022	82869237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_82869200_82872000
ENSMUSG00000069793.13_5	chr11	-	5870	4	NIC	ENSMUSG00000069793.13	novel	2128	5	NA	NA	0	-19	intron_retention	FALSE	canonical	3	11	junction_3	15.8394724940223	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAGAAAACATAT	8620	False	NA	-25	True	NA	NA	NA	82881963	82869234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_82873704_82875382_82875518_82878064_82879135_82881767
ENSMUSG00000069793.13_7	chr11	-	6531	3	ISM	ENSMUSG00000069793.13	ENSMUST00000038211.13	5769	5	5042	22	4349	-22	3prime_fragment	FALSE	canonical	3	41	junction_1	2.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAGAAAGAAAACA	NA	False	NA	-28	True	NA	NA	NA	82877614	82869237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_82872813_82872979_82873704_82875382
ENSMUSG00000069793.13_8	chr11	-	3964	2	ISM	ENSMUSG00000069793.13	ENSMUST00000038211.13	5769	5	9288	22	8595	-22	3prime_fragment	FALSE	canonical	3	41	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAGAAAGAAAACA	NA	False	NA	-28	True	NA	NA	NA	82873368	82869237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_82872813_82872979
ENSMUSG00000069805.11_0	chr13	-	1349	7	FSM	ENSMUSG00000069805.11	ENSMUST00000092888.11	1479	7	122	8	-33	5	multi-exon	FALSE	canonical	0	0	junction_6	4.93288286231625	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTATTTTTTCTTTAG	NA	False	NA	NA	False	AATAAA	-15	NA	63035974	63012574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_63012982_63015152_63015273_63016795_63016934_63018979_63019121_63020503_63020597_63022962_63023126_63035687
ENSMUSG00000069808.14_0	chr11	+	2179	5	FSM	ENSMUSG00000069808.14	ENSMUST00000129853.8	962	5	23	-1240	23	-3	multi-exon	TRUE	canonical	1	2	junction_1	21.775846711437	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATTTGTTATGTGCCCTG	NA	False	NA	NA	False	ATTAAA	-14	NA	76070519	76100239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_76070813_76093377_76093462_76096079_76096282_76097953_76098050_76098735
ENSMUSG00000069808.14_1	chr11	+	2118	5	FSM	ENSMUSG00000069808.14	ENSMUST00000094014.10	2130	5	9	3	9	-3	multi-exon	FALSE	canonical	3	42	junction_2	6.18465843842649	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATTTGTTATGTGCCCTG	3415	False	NA	NA	False	ATTAAA	-14	NA	76092849	76100239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_76093082_76093377_76093462_76096079_76096282_76097953_76098050_76098735
ENSMUSG00000069808.14_2	chr11	+	1896	4	NIC	ENSMUSG00000069808.14	novel	2130	5	NA	NA	-19	-2	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	24.0739601136904	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTGTTATGTGCCCTGG	3436	False	NA	NA	False	ATTAAA	-15	NA	76092870	76100240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_76093082_76093377_76093462_76097953_76098050_76098735
ENSMUSG00000069808.14_5	chr11	+	5264	2	NIC	ENSMUSG00000069808.14	novel	2130	5	NA	NA	1357	-9	intron_retention	FALSE	canonical	3	59	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTCTATTTGTTATGT	4849	False	NA	NA	False	ATTAAA	-8	NA	76094283	76100233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_76098050_76098735
ENSMUSG00000069814.7_0	chr11	+	3965	4	FSM	ENSMUSG00000069814.7	ENSMUST00000100866.3	4002	4	25	12	25	-12	multi-exon	FALSE	canonical	2	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCATTCTCACGATGAGA	NA	False	NA	12	True	AATAAA	-18	NA	74510455	74532330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_74510673_74520784_74520938_74526066_74526115_74528783
ENSMUSG00000069814.7_1	chr11	+	2886	1	ISM	ENSMUSG00000069814.7	ENSMUST00000100866.3	4002	4	19010	16	19010	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAGTCCATTCTCACGAT	NA	False	NA	8	True	AATAAA	-14	NA	74529440	74532326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_74529400_74532300
ENSMUSG00000069833.14_0	chr19	+	1042	6	FSM	ENSMUSG00000069833.14	ENSMUST00000092955.11	830	6	-9	-203	2	3	multi-exon	FALSE	canonical	3	34	junction_5	17.6703140888893	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCTGTGATCACCATG	NA	False	NA	16	True	AATAAA	-17	NA	8966649	9054281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9053939
ENSMUSG00000069833.14_8	chr19	+	4483	1	ISM	ENSMUSG00000069833.14	ENSMUST00000092956.4	18100	5	25428	2	15052	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	296	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTATCGTGCTCTTGTAT	1424	False	NA	4	True	AATAAA	-17	NA	8992075	8996558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8992100_8996600
ENSMUSG00000069835.11_3	chr11	+	1783	6	FSM	ENSMUSG00000069835.11	ENSMUST00000108656.9	968	6	47	-862	19	862	multi-exon	FALSE	canonical	2	7	junction_2	1.72046505340853	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAAAATCCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	69512896	69515558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
ENSMUSG00000069844.13_1	chr11	+	1741	6	FSM	ENSMUSG00000069844.13	ENSMUST00000092996.5	2412	6	-1	672	-1	-431	multi-exon	FALSE	canonical	3	241	junction_2	26.3469163281019	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTGGACAAGCATGGCTT	NA	False	NA	7	True	AATAAA	-19	NA	66943494	66955726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731
ENSMUSG00000069844.13_10	chr11	+	1337	1	ISM	ENSMUSG00000069844.13	ENSMUST00000092996.5	2412	6	11554	12	5897	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCTTGGTACTTACATG	NA	False	NA	2	True	AATAAA	-20	NA	66955049	66956386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_66955000_66956400
ENSMUSG00000069855.10_0	chr11	-	1963	12	NIC	ENSMUSG00000069855.10	novel	2377	17	NA	NA	5532	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_9	5.65393156562408	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTGTGCTGAGAATAT	NA	False	NA	NA	False	AATAAA	-13	NA	61227878	61192456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_61193266_61193526_61193582_61194746_61194842_61198357_61198491_61199691_61199762_61200786_61200863_61201560_61201670_61203615_61203684_61204469_61204584_61216622_61216721_61219353_61219452_61227640
ENSMUSG00000069862.7_0	chr8	+	168	1	FSM	ENSMUSG00000069862.7	ENSMUST00000139165.2	399	1	245	-14	245	14	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	123933606	123933774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123933600_123933800
ENSMUSG00000069874.8_0	chr11	+	3513	3	FSM	ENSMUSG00000069874.8	ENSMUST00000209079.2	3528	3	0	15	0	-4	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTATATAAATAGATGTA	1574	False	NA	NA	False	AATAAA	-11	NA	58105833	58113593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58105997_58107781_58107828_58110289
ENSMUSG00000069874.8_1	chr11	+	3458	2	FSM	ENSMUSG00000069874.8	ENSMUST00000108836.2	3459	2	-4	5	-4	3	multi-exon	FALSE	canonical	2	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATAGATGTATTATTTT	1590	False	NA	NA	False	AATAAA	-18	NA	58105849	58113600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58105997_58110289
ENSMUSG00000069895.5_1	chr8	-	2873	1	ISM	ENSMUSG00000069895.5	ENSMUST00000093162.4	7526	4	8409	7	2783	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTGGTGTTTGCGCCT	NA	False	NA	-7	True	NA	NA	NA	110455962	110453089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_110453100_110456000
ENSMUSG00000069895.5_10	chr8	-	401	3	ISM	ENSMUSG00000069895.5	ENSMUST00000212726.2	461	4	5	1617	5	-1617	5prime_fragment	FALSE	canonical	3	22	junction_2	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-30	NA	110464366	110461764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_110461996_110462091_110462158_110464262
ENSMUSG00000069895.5_2	chr8	-	7319	4	NNC	ENSMUSG00000069895.5	novel	7526	4	NA	NA	-6	-195	intron_retention	FALSE	canonical	3	4	junction_1	11.5854314646552	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTGTACTTTTGTGAGA	NA	False	NA	0	True	AATAAA	-15	NA	110464360	110453281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_110460378_110461936_110461996_110462091_110462158_110464262
ENSMUSG00000069895.5_4	chr8	-	7460	3	FSM	ENSMUSG00000069895.5	ENSMUST00000212605.2	7439	3	-22	1	-5	-1	multi-exon	FALSE	canonical	3	17	junction_2	6.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTTTGCGCCTTT	NA	False	NA	-5	True	NA	NA	NA	110464376	110453087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_110460375_110461936_110461996_110464262
ENSMUSG00000069895.5_8	chr8	-	7318	4	FSM	ENSMUSG00000069895.5	ENSMUST00000093162.4	7526	4	4	204	4	-200	multi-exon	FALSE	canonical	3	22	junction_3	4.32049379893857	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTATATTTGTACTTTTG	NA	False	NA	-5	True	AATAAA	-10	NA	110464367	110453286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_110460375_110461936_110461996_110462091_110462158_110464262
ENSMUSG00000069899.4_1	chr11	-	976	1	FSM	ENSMUSG00000069899.4	ENSMUST00000093169.3	958	1	-31	13	-21	1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAGACA	1766	False	NA	NA	False	AATAAA	-17	NA	45943169	45942193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_45942200_45943200
ENSMUSG00000069899.4_2	chr11	-	812	2	FSM	ENSMUSG00000069899.4	ENSMUST00000154156.2	784	2	-27	-1	-27	1	multi-exon	FALSE	canonical	3	114	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAGACA	1760	False	NA	NA	False	AATAAA	-17	NA	45943175	45942193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_45942889_45943058
ENSMUSG00000069910.3_1	chr11	-	2478	12	FSM	ENSMUSG00000069910.3	ENSMUST00000093191.3	2505	12	27	0	-22	0	multi-exon	FALSE	canonical	3	139	junction_9	17.9669117367279	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTGTATTTTTTAAT	NA	False	NA	-7	True	AATAAA	-15	NA	34724441	34700016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551_34721727_34724314
ENSMUSG00000069910.3_5	chr11	-	2115	10	ISM	ENSMUSG00000069910.3	ENSMUST00000093191.3	2505	12	8163	0	-1527	0	3prime_fragment	FALSE	canonical	3	139	junction_9	16.8178329808819	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTGTATTTTTTAAT	2662	False	NA	-7	True	AATAAA	-15	NA	34716305	34700016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189
ENSMUSG00000069920.11_0	chr8	-	2299	2	FSM	ENSMUSG00000069920.11	ENSMUST00000093217.9	2325	2	26	0	26	0	multi-exon	FALSE	canonical	2	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTTTCTCTTCTCAATT	9989	False	NA	NA	False	ATTAAA	-15	NA	105981757	105979270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_105981475_105981662
ENSMUSG00000069920.11_1	chr8	-	839	1	FSM	ENSMUSG00000069920.11	ENSMUST00000136822.3	2516	1	1676	1	1674	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTTTCTCTTCTCAATT	9293	False	NA	NA	False	ATTAAA	-15	NA	105980109	105979270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_105979300_105980100
ENSMUSG00000069939.9_0	chr11	+	921	1	FSM	ENSMUSG00000069939.9	ENSMUST00000119551.2	1002	1	261	-180	261	180	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAATAAATAAATAAATA	NA	False	NA	NA	False	AATAAA	-14	NA	26736893	26737814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_26736900_26737800
ENSMUSG00000070000.14_11	chr8	-	2889	28	FSM	ENSMUSG00000070000.14	ENSMUST00000146100.8	3188	28	40	259	-10	0	multi-exon	FALSE	non_canonical	0	0	junction_17	36.1995308763152	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAATAAAGAGGAATCC	NA	False	NA	-15	True	AATAAA	-10	NA	72178320	72161296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_72161476_72161569_72161735_72161973_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167526_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
ENSMUSG00000070000.14_27	chr8	-	3126	27	NIC	ENSMUSG00000070000.14	novel	3351	27	NA	NA	-1	3	intron_retention	TRUE	non_canonical	2	21	junction_16	33.8988226567648	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAGAGGAATCCTCT	NA	False	NA	-12	True	AATAAA	-13	NA	72178311	72161293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_72161476_72161569_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167522_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
ENSMUSG00000070000.14_32	chr8	-	3128	27	FSM	ENSMUSG00000070000.14	ENSMUST00000143699.8	3351	27	-10	233	-10	0	multi-exon	FALSE	non_canonical	0	0	junction_16	36.8870216588966	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAATAAAGAGGAATCC	NA	False	NA	-15	True	AATAAA	-10	NA	72178320	72161296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_72161476_72161569_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167526_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
ENSMUSG00000070000.14_6	chr8	-	2881	28	NIC	ENSMUSG00000070000.14	novel	3188	28	NA	NA	-6	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_17	42.1115834365511	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAATAAAGAGGAATCC	NA	False	NA	-15	True	AATAAA	-10	NA	72178316	72161296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_72161476_72161569_72161735_72161973_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167526_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173945_72174462_72174504_72178276
ENSMUSG00000070002.8_3	chr8	+	3131	12	NIC	ENSMUSG00000070002.8	novel	457	5	NA	NA	-179	-2	combination_of_known_junctions	TRUE	canonical	2	6	junction_1	42.1565363107432	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCTCTGTGGTTTGAGT	NA	False	NA	6	True	AATAAA	-14	NA	70991927	71045506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70992143_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147
ENSMUSG00000070002.8_4	chr8	+	3058	12	FSM	ENSMUSG00000070002.8	ENSMUST00000093454.8	3072	12	8	6	8	-6	multi-exon	FALSE	canonical	3	95	junction_2	19.7818683154445	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAACCTCTCTGTGGTTT	NA	False	NA	2	True	AATAAA	-10	NA	70992345	71045502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70992492_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147
ENSMUSG00000070003.8_1	chr8	-	1464	17	FSM	ENSMUSG00000070003.8	ENSMUST00000049908.11	1475	17	10	1	-2	0	multi-exon	FALSE	canonical	3	428	junction_1	289.200298236361	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTACTGCTGATGTC	NA	False	NA	-11	True	AATAAA	-16	NA	71060954	71050140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
ENSMUSG00000070003.8_4	chr8	-	1800	15	NIC	ENSMUSG00000070003.8	novel	1828	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	981	junction_3	172.790615887482	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTACTGCTGATGTC	NA	False	NA	-11	True	AATAAA	-16	NA	71060962	71050140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71050771_71050855_71050885_71051188_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
ENSMUSG00000070003.8_5	chr8	-	1715	16	NIC	ENSMUSG00000070003.8	novel	1828	16	NA	NA	1	0	intron_retention	FALSE	canonical	3	751	junction_3	214.93682792858	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTACTGCTGATGTC	NA	False	NA	-11	True	AATAAA	-16	NA	71060961	71050140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
ENSMUSG00000070003.8_7	chr8	-	1578	17	NIC	ENSMUSG00000070003.8	novel	1475	17	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	86	junction_1	351.765524710708	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTACTGCTGATGTC	NA	False	NA	-11	True	AATAAA	-16	NA	71060952	71050140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71050419_71050546_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
ENSMUSG00000070003.8_8	chr8	-	1546	16	NIC	ENSMUSG00000070003.8	novel	1475	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	428	junction_1	272.959695844562	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTACTGCTGATGTC	NA	False	NA	-11	True	AATAAA	-16	NA	71060952	71050140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
ENSMUSG00000070044.16_0	chr8	-	2339	14	FSM	ENSMUSG00000070044.16	ENSMUST00000155230.2	2661	14	-1	323	-1	-323	multi-exon	FALSE	canonical	0	0	junction_1	1.30995279737895	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTATGAGCAGCATGCC	NA	False	NA	NA	False	AATAAA	-14	NA	45811800	45792118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_45792410_45794019_45794099_45794192_45794322_45795427_45795552_45797494_45797699_45798008_45798122_45801478_45801634_45801987_45802179_45803437_45803609_45804699_45804826_45806855_45806999_45808268_45808408_45808658_45808767_45811434
ENSMUSG00000070047.15_10	chr8	+	5702	17	ISM	ENSMUSG00000070047.15	ENSMUST00000098796.10	14627	26	77291	20	-16742	-8	3prime_fragment	FALSE	canonical	3	28	junction_1	12.2824824445224	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATACTTTAGCTTTAA	NA	False	NA	0	True	AATAAA	-7	NA	45480535	45505274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45480718_45482492_45482647_45483148_45483383_45484301_45484692_45486375_45486591_45486868_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45503817
ENSMUSG00000070047.15_12	chr8	+	5249	16	ISM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	80075	-10	-13958	-2	3prime_fragment	FALSE	canonical	3	33	junction_15	12.266304342475	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCCTGGTTTTCTTCTGC	NA	False	NA	18	True	AATAAA	-25	NA	45483319	45505292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45483383_45484301_45484692_45486375_45486591_45486868_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45502878_45502915_45503817
ENSMUSG00000070047.15_14	chr8	+	4840	15	ISM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	81384	9	-12649	-9	3prime_fragment	FALSE	canonical	3	33	junction_14	12.5594504624353	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATACTTTAGCTTTA	NA	False	NA	-1	True	AATAAA	-6	NA	45484628	45505273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45484692_45486375_45486591_45486868_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45502878_45502915_45503817
ENSMUSG00000070047.15_15	chr8	+	4693	14	ISM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	83224	0	-10809	0	3prime_fragment	FALSE	canonical	3	33	junction_13	12.5504897473927	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGCTTTAATGCCTGGT	NA	False	NA	8	True	AATAAA	-15	NA	45486468	45505282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45486591_45486868_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45502878_45502915_45503817
ENSMUSG00000070047.15_20	chr8	+	4214	11	ISM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	85977	9	-8056	-9	3prime_fragment	FALSE	canonical	3	33	junction_10	12.4515059330187	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATACTTTAGCTTTA	NA	False	NA	-1	True	AATAAA	-6	NA	45489221	45505273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45502878_45502915_45503817
ENSMUSG00000070047.15_22	chr8	+	3759	9	ISM	ENSMUSG00000070047.15	ENSMUST00000098796.10	14627	26	86755	21	-7278	-9	3prime_fragment	FALSE	canonical	3	44	junction_8	9.40412143690201	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATACTTTAGCTTTA	NA	False	NA	-1	True	AATAAA	-6	NA	45489999	45505273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45503817
ENSMUSG00000070047.15_23	chr8	+	3943	10	ISM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	86604	12	-7429	-12	3prime_fragment	FALSE	canonical	3	33	junction_9	13.0979218029257	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATAAAATACTTTAGCT	NA	False	NA	-4	True	AATAAA	-3	NA	45489848	45505270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45502878_45502915_45503817
ENSMUSG00000070047.15_26	chr8	+	2780	6	ISM	ENSMUSG00000070047.15	ENSMUST00000098796.10	14627	26	90500	21	-3533	-9	3prime_fragment	FALSE	canonical	3	44	junction_5	11.4647285183732	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATACTTTAGCTTTA	NA	False	NA	-1	True	AATAAA	-6	NA	45493744	45505273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45503817
ENSMUSG00000070047.15_27	chr8	+	2606	7	ISM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	90729	-10	-3304	-2	3prime_fragment	FALSE	canonical	3	33	junction_6	15.2251619221457	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCCTGGTTTTCTTCTGC	NA	False	NA	18	True	AATAAA	-25	NA	45493973	45505292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45502878_45502915_45503817
ENSMUSG00000070047.15_30	chr8	+	2072	3	ISM	ENSMUSG00000070047.15	ENSMUST00000098796.10	14627	26	93872	18	-161	-6	3prime_fragment	FALSE	canonical	3	44	junction_2	8.5	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACTTTAGCTTTAATG	NA	False	NA	2	True	AATAAA	-9	NA	45497116	45505276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45497592_45498067_45498206_45503817
ENSMUSG00000070047.15_31	chr8	+	1292	1	ISM	ENSMUSG00000070047.15	ENSMUST00000191428.7	14814	27	115516	3	5828	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGCCTGGTTTTCTTCTG	NA	False	NA	17	True	AATAAA	-24	NA	45503999	45505291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45504000_45505300
ENSMUSG00000070047.15_39	chr8	+	5252	15	ISM	ENSMUSG00000070047.15	ENSMUST00000098796.10	14627	26	80017	21	-14016	-9	3prime_fragment	FALSE	canonical	3	39	junction_4	11.1529258538753	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATACTTTAGCTTTA	NA	False	NA	-1	True	AATAAA	-6	NA	45483261	45505273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45483383_45484301_45484692_45486375_45486591_45486868_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45503817
ENSMUSG00000070047.15_42	chr8	+	4480	13	ISM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	83714	1	-10319	-1	3prime_fragment	FALSE	canonical	3	33	junction_12	12.9314431608472	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTAGCTTTAATGCCTGG	NA	False	NA	7	True	AATAAA	-14	NA	45486958	45505281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45502878_45502915_45503817
ENSMUSG00000070047.15_5	chr8	+	6732	18	ISM	ENSMUSG00000070047.15	ENSMUST00000098796.10	14627	26	75661	8	-18372	4	3prime_fragment	FALSE	canonical	3	28	junction_2	12.0097999199673	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTAATGCCTGGTTTTC	NA	False	NA	12	True	AATAAA	-19	NA	45478905	45505286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45479909_45480520_45480718_45482492_45482647_45483148_45483383_45484301_45484692_45486375_45486591_45486868_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45503817
ENSMUSG00000070047.15_7	chr8	+	7545	19	ISM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	74879	1	-19154	-1	3prime_fragment	FALSE	canonical	3	28	junction_2	12.6130688641916	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTAGCTTTAATGCCTGG	NA	False	NA	7	True	AATAAA	-14	NA	45478123	45505281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_45479909_45480520_45480718_45482492_45482647_45483148_45483383_45484301_45484692_45486375_45486591_45486868_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45502878_45502915_45503817
ENSMUSG00000070056.7_0	chr8	+	6095	3	FSM	ENSMUSG00000070056.7	ENSMUST00000037666.6	6408	3	251	62	251	-62	multi-exon	FALSE	canonical	1	3	junction_2	1	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	36055202	36146541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_36058513_36131821_36131949_36143883
ENSMUSG00000070056.7_1	chr8	+	6417	4	NIC	ENSMUSG00000070056.7	novel	6408	3	NA	NA	39	-62	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	36054990	36146541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_36058513_36131821_36131949_36138875_36138986_36143883
ENSMUSG00000070282.7_0	chr9	-	2547	1	FSM	ENSMUSG00000070282.7	ENSMUST00000133495.3	1008	1	-1344	-195	-19	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCCACAAAAAACCAAAAACA	NA	False	NA	NA	False	AATAAA	-11	NA	109661793	109659246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_109659200_109661800
ENSMUSG00000070283.5_0	chr9	-	670	5	FSM	ENSMUSG00000070283.5	ENSMUST00000074208.6	1487	5	488	329	-16	-5	multi-exon	FALSE	canonical	3	428	junction_3	47.1301389770919	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATATTTTTGTTGCTCAGT	8631	False	NA	-7	True	NA	NA	NA	108444145	108443064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108443275_108443357_108443459_108443539_108443607_108443754_108443951_108444049
ENSMUSG00000070284.11_0	chr9	+	1404	10	NIC	ENSMUSG00000070284.11	novel	1429	10	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	34.1655374700484	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTGGACTGGAAGTCAAG	NA	False	NA	28	True	NA	NA	NA	107926488	107928900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107926561_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUSG00000070284.11_1	chr9	+	1463	10	FSM	ENSMUSG00000070284.11	ENSMUST00000047947.9	1429	10	-35	1	1	-1	multi-exon	FALSE	canonical	3	24	junction_1	31.8309578326385	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTGGACTGGAAGTCAAG	NA	False	NA	28	True	NA	NA	NA	107926488	107928900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107926620_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUSG00000070284.11_19	chr9	+	1860	8	FSM	ENSMUSG00000070284.11	ENSMUST00000137284.8	1853	8	-10	3	10	-3	multi-exon	FALSE	canonical	3	100	junction_6	10.1196918562428	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAAGCAGTCCTTGTTG	NA	False	NA	7	True	NA	NA	NA	107926477	107929112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928442_107928524
ENSMUSG00000070284.11_2	chr9	+	1758	9	FSM	ENSMUSG00000070284.11	ENSMUST00000112295.9	2702	9	49	895	2	-10	multi-exon	FALSE	canonical	3	94	junction_7	12.9807549857472	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTGCAGAAGAAGCAGTC	NA	False	NA	0	True	NA	NA	NA	107926489	107929105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUSG00000070287.4_0	chr9	-	1698	2	FSM	ENSMUSG00000070287.4	ENSMUST00000093792.4	1590	2	-115	7	-115	-5	multi-exon	FALSE	canonical	2	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATATGTCATGATCTTT	NA	False	NA	NA	False	AATAAA	-12	NA	100453258	100434247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_100435688_100453000
ENSMUSG00000070291.5_0	chr9	+	2186	17	FSM	ENSMUSG00000070291.5	ENSMUST00000113367.2	2207	17	21	0	21	0	multi-exon	FALSE	canonical	3	26	junction_4	22.7904002542737	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTGAAATTTTTTA	9063	False	NA	2	True	AATAAA	-13	NA	78303079	78330869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_78303409_78306322_78306379_78308130_78308258_78309631_78309764_78313632_78313715_78318873_78319031_78319474_78319594_78320247_78320359_78321024_78321167_78321505_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
ENSMUSG00000070291.5_1	chr9	+	1120	4	ISM	ENSMUSG00000070291.5	ENSMUST00000113367.2	2207	17	-1	20652	-1	-20652	5prime_fragment	FALSE	canonical	3	88	junction_3	5.71547606649408	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACAGAAAAAAGAGTTGTT	9041	False	NA	NA	False	NA	NA	NA	78303057	78310217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_78303409_78306322_78306379_78308130_78308258_78309631
ENSMUSG00000070291.5_11	chr9	+	3398	14	NIC	ENSMUSG00000070291.5	novel	2207	17	NA	NA	47	0	intron_retention	FALSE	canonical	3	37	junction_4	19.1295799327211	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTGAAATTTTTTA	9089	False	NA	2	True	AATAAA	-13	NA	78303105	78330869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_78303409_78306322_78306379_78308130_78308258_78309631_78309764_78318873_78319031_78319474_78321167_78321505_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
ENSMUSG00000070291.5_12	chr9	+	3848	13	NIC	ENSMUSG00000070291.5	novel	2207	17	NA	NA	41	0	intron_retention	FALSE	canonical	3	37	junction_4	17.6704005488148	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTGAAATTTTTTA	9083	False	NA	2	True	AATAAA	-13	NA	78303099	78330869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_78303409_78306322_78306379_78308130_78308258_78309631_78309764_78318873_78321167_78321505_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
ENSMUSG00000070291.5_18	chr9	+	2747	15	NIC	ENSMUSG00000070291.5	novel	2207	17	NA	NA	32	0	intron_retention	FALSE	canonical	3	37	junction_4	19.3260160912482	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTGAAATTTTTTA	9074	False	NA	2	True	AATAAA	-13	NA	78303090	78330869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_78303409_78306322_78306379_78308130_78308258_78309631_78309764_78318873_78319031_78319474_78320359_78321024_78321167_78321505_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
ENSMUSG00000070291.5_24	chr9	+	1844	8	NIC	ENSMUSG00000070291.5	novel	2207	17	NA	NA	17534	0	intron_retention	FALSE	canonical	3	58	junction_4	9.45666809339164	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTGAAATTTTTTA	NA	False	NA	2	True	AATAAA	-13	NA	78320592	78330869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
ENSMUSG00000070291.5_3	chr9	+	3107	14	NIC	ENSMUSG00000070291.5	novel	2207	17	NA	NA	23	0	intron_retention	FALSE	canonical	3	37	junction_4	20.2241872884744	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTGAAATTTTTTA	9065	False	NA	2	True	AATAAA	-13	NA	78303081	78330869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_78303409_78306322_78306379_78308130_78308258_78309631_78309764_78318873_78319031_78319474_78319594_78320247_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
ENSMUSG00000070291.5_5	chr9	+	2094	16	NIC	ENSMUSG00000070291.5	novel	2207	17	NA	NA	31	0	combination_of_known_splicesites	FALSE	canonical	3	37	junction_4	19.8422668955832	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTGAAATTTTTTA	9073	False	NA	2	True	AATAAA	-13	NA	78303089	78330869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_78303409_78306322_78306379_78308130_78308258_78309631_78309764_78318873_78319031_78319474_78319594_78320247_78320359_78321024_78321167_78321505_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
ENSMUSG00000070305.11_0	chr9	+	3376	6	FSM	ENSMUSG00000070305.11	ENSMUST00000114664.8	3424	6	44	4	21	-4	multi-exon	FALSE	canonical	3	16	junction_2	3.70944739819828	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTACCCTTTTCGTGTCT	NA	False	NA	23	True	AATAAA	-16	NA	44966527	44988730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_44966617_44973338_44973506_44977636_44977848_44979504_44979671_44981953_44982018_44986051
ENSMUSG00000070305.11_2	chr9	+	196	1	ISM	ENSMUSG00000070305.11	ENSMUST00000093856.4	3260	2	8099	1687	4038	-1687	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATAAAATAAAATAATTTA	NA	False	NA	NA	False	NA	NA	NA	44974584	44974780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44974600_44974800
ENSMUSG00000070305.11_4	chr9	+	2573	1	ISM	ENSMUSG00000070305.11	ENSMUST00000114664.8	3424	6	19674	4	4255	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTACCCTTTTCGTGTCT	713	False	NA	23	True	AATAAA	-16	NA	44986157	44988730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_44986200_44988700
ENSMUSG00000070319.7_0	chr9	-	1076	11	FSM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	23	2	6	-2	multi-exon	FALSE	canonical	3	2112	junction_10	212.212370044727	1179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTCCTGCTTATTTT	5162	False	NA	-3	True	AGTAAA	-14	NA	20809896	20805646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379_20809464_20809673_20809721_20809839
ENSMUSG00000070319.7_4	chr9	-	1406	9	ISM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	23	1	6	-1	intron_retention	FALSE	canonical	3	2349	junction_1	159.342398626354	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTCCTGCTTATTTTC	5162	False	NA	-2	True	AGTAAA	-15	NA	20809896	20805645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379
ENSMUSG00000070327.15_14	chr11	+	7974	40	NNC	ENSMUSG00000070327.15	novel	16716	67	NA	NA	-35363	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_5	27.8500729168294	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTAAGAGTCCTGTTTG	NA	False	NA	11	True	AATAAA	-11	NA	119333519	119378241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_119334618_119336455_119336593_119336935_119337032_119338060_119338180_119339579_119339700_119340070_119340181_119340549_119340701_119340918_119341058_119343336_119343529_119345265_119345412_119346978_119347134_119349093_119349319_119349558_119349741_119350766_119350888_119352716_119352818_119352926_119353110_119354129_119354300_119354393_119354494_119355830_119355943_119356711_119356923_119357049_119357241_119358052_119358176_119358795_119358907_119359643_119359887_119360957_119361040_119361680_119361716_119362540_119362636_119364189_119364350_119364991_119365161_119367288_119367381_119367874_119368127_119370362_119370496_119370689_119370774_119371576_119371758_119371971_119372174_119373222_119373301_119373756_119373952_119374480_119374571_119374662_119374842_119376830
ENSMUSG00000070327.15_48	chr11	+	3545	17	ISM	ENSMUSG00000070327.15	ENSMUST00000093902.12	16716	67	75854	0	-9103	0	3prime_fragment	FALSE	canonical	3	92	junction_4	20.7454814357247	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTAAGAGTCCTGTTTG	4198	False	NA	11	True	AATAAA	-11	NA	119359779	119378241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119359887_119360957_119361040_119361680_119361716_119362540_119362636_119364189_119364350_119364991_119365161_119367288_119367381_119367874_119368127_119370362_119370496_119370689_119370774_119371576_119371758_119371971_119372174_119373222_119373301_119373756_119373952_119374480_119374571_119374662_119374842_119376830
ENSMUSG00000070327.15_52	chr11	+	3391	16	ISM	ENSMUSG00000070327.15	ENSMUST00000093902.12	16716	67	77079	0	-7878	0	3prime_fragment	FALSE	canonical	3	92	junction_3	20.2730253182784	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTAAGAGTCCTGTTTG	5423	False	NA	11	True	AATAAA	-11	NA	119361004	119378241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119361040_119361680_119361716_119362540_119362636_119364189_119364350_119364991_119365161_119367288_119367381_119367874_119368127_119370362_119370496_119370689_119370774_119371576_119371758_119371971_119372174_119373222_119373301_119373756_119373952_119374480_119374571_119374662_119374842_119376830
ENSMUSG00000070327.15_56	chr11	+	3192	13	ISM	ENSMUSG00000070327.15	ENSMUST00000131035.10	16716	67	80300	1	-4657	0	3prime_fragment	FALSE	canonical	3	103	junction_1	15.4782553567542	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAAGAGTCCTGTTTGGG	8644	False	NA	13	True	AATAAA	-13	NA	119364225	119378243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119364350_119364991_119365161_119367288_119367381_119367874_119368127_119370362_119370496_119370689_119370774_119371576_119371758_119371971_119372174_119373222_119373301_119373756_119373952_119374480_119374571_119374662_119374842_119376830
ENSMUSG00000070327.15_58	chr11	+	2977	12	ISM	ENSMUSG00000070327.15	ENSMUST00000093902.12	16716	67	81155	0	-3802	0	3prime_fragment	FALSE	canonical	3	107	junction_2	13.3218269910762	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTAAGAGTCCTGTTTG	9499	False	NA	11	True	AATAAA	-11	NA	119365080	119378241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119365161_119367288_119367381_119367874_119368127_119370362_119370496_119370689_119370774_119371576_119371758_119371971_119372174_119373222_119373301_119373756_119373952_119374480_119374571_119374662_119374842_119376830
ENSMUSG00000070327.15_60	chr11	+	2630	10	ISM	ENSMUSG00000070327.15	ENSMUST00000131035.10	16716	67	84126	1	-831	0	3prime_fragment	FALSE	canonical	3	128	junction_3	8.71779788708135	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAAGAGTCCTGTTTGGG	NA	False	NA	13	True	AATAAA	-13	NA	119368051	119378243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119368127_119370362_119370496_119370689_119370774_119371576_119371758_119371971_119372174_119373222_119373301_119373756_119373952_119374480_119374571_119374662_119374842_119376830
ENSMUSG00000070327.15_71	chr11	+	1013	1	ISM	ENSMUSG00000070327.15	ENSMUST00000131035.10	16716	67	93305	1	8348	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAAGAGTCCTGTTTGGG	1312	False	NA	13	True	AATAAA	-13	NA	119377230	119378243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_119377200_119378200
ENSMUSG00000070337.5_0	chr11	-	2580	1	ISM	ENSMUSG00000070337.5	ENSMUST00000093942.5	9219	11	17325	3	17325	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCCTGTGGTCGGCTCCA	NA	False	NA	NA	False	AATAAA	-15	NA	97225517	97222937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97222900_97225500
ENSMUSG00000070343.4_0	chr3	-	572	1	FSM	ENSMUSG00000070343.4	ENSMUST00000084614.5	537	1	-6	-29	-6	29	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAGAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-29	NA	146545108	146544536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_146544500_146545100
ENSMUSG00000070345.4_0	chr11	+	4173	6	FSM	ENSMUSG00000070345.4	ENSMUST00000093956.4	4158	6	-22	7	-22	-7	multi-exon	FALSE	canonical	0	0	junction_1	4.19523539268061	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGACTCTTGTCTTGGT	NA	False	NA	NA	False	AATAAA	-12	NA	87507967	87550361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_87508732_87513570_87513946_87522417_87522516_87526436_87526959_87528895_87529071_87548122
ENSMUSG00000070345.4_1	chr11	+	3621	5	NIC	ENSMUSG00000070345.4	novel	4158	6	NA	NA	8	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	4.32290411644765	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGACTCTTGTCTTGGT	NA	False	NA	NA	False	AATAAA	-12	NA	87507997	87550361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_87508732_87513570_87513946_87522417_87522516_87528895_87529071_87548122
ENSMUSG00000070345.4_3	chr11	+	3250	4	NIC	ENSMUSG00000070345.4	novel	4158	6	NA	NA	4	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	4.92160768674447	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGACTCTTGTCTTGGT	NA	False	NA	NA	False	AATAAA	-12	NA	87507993	87550361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_87508732_87522417_87522516_87528895_87529071_87548122
ENSMUSG00000070348.6_0	chr7	-	3649	5	FSM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	40	51	40	-51	multi-exon	FALSE	canonical	3	335	junction_3	35.5316760088797	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGAAAAAAAAAAAGACAAA	NA	False	NA	-55	True	NA	NA	NA	144493566	144483718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_144486509_144487752_144487902_144491030_144491191_144491623_144491840_144493232
ENSMUSG00000070348.6_1	chr7	-	3716	5	NNC	ENSMUSG00000070348.6	novel	3740	5	NA	NA	42	-48	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	163.518347594391	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGACAAAAAA	NA	False	NA	-52	True	NA	NA	NA	144493564	144483715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_144486575_144487752_144487902_144491030_144491191_144491623_144491840_144493232
ENSMUSG00000070348.6_2	chr7	-	2012	1	ISM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	7879	48	6207	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGACAAAAAA	NA	False	NA	-52	True	NA	NA	NA	144485727	144483715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_144483700_144485700
ENSMUSG00000070371.12_0	chr7	-	2561	2	ISM	ENSMUSG00000070371.12	ENSMUST00000153110.8	1016	5	20	5	-9	-5	intron_retention	FALSE	canonical	3	106	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACACGTGGCTTTGTGG	NA	False	NA	NA	False	AATAAA	-10	NA	127534631	127531814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_127532287_127532542
ENSMUSG00000070371.12_1	chr7	-	862	4	NIC	ENSMUSG00000070371.12	novel	1052	5	NA	NA	-1	-9	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	36.3409777890836	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGACACGTGGCTTT	NA	False	NA	NA	False	AATAAA	-6	NA	127534652	127531818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127532287_127532542_127532665_127533561_127533800_127534618
ENSMUSG00000070371.12_10	chr7	-	1653	4	NNC	ENSMUSG00000070371.12	novel	1132	6	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	42.1979462375442	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGACACGTGGCTTT	NA	False	NA	NA	False	AATAAA	-6	NA	127534622	127531818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533825
ENSMUSG00000070371.12_11	chr7	-	1158	5	NIC	ENSMUSG00000070371.12	novel	1132	6	NA	NA	4	-9	combination_of_known_splicesites	FALSE	canonical	3	21	junction_3	30.0863341070327	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGACACGTGGCTTT	NA	False	NA	NA	False	AATAAA	-6	NA	127534682	127531818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533561_127533800_127534618
ENSMUSG00000070371.12_13	chr7	-	1096	4	NIC	ENSMUSG00000070371.12	novel	1132	6	NA	NA	801	-8	combination_of_known_splicesites	FALSE	canonical	3	21	junction_3	34.7083083233203	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACAGACACGTGGCTTTG	NA	False	NA	NA	False	AATAAA	-7	NA	127533800	127531817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533561
ENSMUSG00000070371.12_19	chr7	-	2848	1	NIC	ENSMUSG00000070371.12	novel	1052	5	NA	NA	-11	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACACGTGGCTTTGTGG	NA	False	NA	NA	False	AATAAA	-10	NA	127534662	127531814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127531800_127534700
ENSMUSG00000070371.12_2	chr7	-	2491	3	ISM	ENSMUSG00000070371.12	ENSMUST00000153110.8	1016	5	20	1	-9	-1	intron_retention	FALSE	canonical	3	62	junction_2	22	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGTGGCTTTGTGGCATC	NA	False	NA	NA	False	AATAAA	-14	NA	127534631	127531810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_127532287_127532542_127532665_127532738
ENSMUSG00000070371.12_22	chr7	-	1121	5	NIC	ENSMUSG00000070371.12	novel	1132	6	NA	NA	0	-9	combination_of_known_splicesites	FALSE	canonical	3	17	junction_4	36.0589794642056	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGACACGTGGCTTT	NA	False	NA	NA	False	AATAAA	-6	NA	127534601	127531818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533561_127533800_127534574
ENSMUSG00000070371.12_23	chr7	-	1290	6	NIC	ENSMUSG00000070371.12	novel	1132	6	NA	NA	-15	-3	combination_of_known_junctions	FALSE	canonical	3	18	junction_4	32.2093154227158	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACGTGGCTTTGTGGCA	NA	False	NA	NA	False	AATAAA	-12	NA	127534666	127531812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533310_127533453_127533561_127533800_127534618
ENSMUSG00000070371.12_31	chr7	-	1269	6	FSM	ENSMUSG00000070371.12	ENSMUST00000156152.3	1132	6	21	-158	0	-3	multi-exon	TRUE	canonical	3	17	junction_5	34.92506263416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACGTGGCTTTGTGGCA	NA	False	NA	NA	False	AATAAA	-12	NA	127534601	127531812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533310_127533453_127533561_127533800_127534574
ENSMUSG00000070371.12_5	chr7	-	1028	5	FSM	ENSMUSG00000070371.12	ENSMUST00000153110.8	1016	5	-15	3	-15	-3	multi-exon	FALSE	canonical	3	15	junction_3	32.1820990614348	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACGTGGCTTTGTGGCA	NA	False	NA	NA	False	AATAAA	-12	NA	127534666	127531812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533681_127533800_127534618
ENSMUSG00000070371.12_6	chr7	-	1715	4	NIC	ENSMUSG00000070371.12	novel	1016	5	NA	NA	12	-1	intron_retention	FALSE	canonical	3	60	junction_3	21.2289111041209	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGTGGCTTTGTGGCATC	NA	False	NA	NA	False	AATAAA	-14	NA	127534674	127531810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127532287_127532542_127532665_127532738_127533800_127534618
ENSMUSG00000070371.12_7	chr7	-	758	4	NIC	ENSMUSG00000070371.12	novel	1016	5	NA	NA	-17	-9	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	40.8683523306509	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGACACGTGGCTTT	NA	False	NA	NA	False	AATAAA	-6	NA	127534668	127531818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_127532287_127532542_127532665_127533681_127533800_127534618
ENSMUSG00000070372.12_0	chr3	-	2923	10	FSM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	112	158	7	-158	multi-exon	FALSE	canonical	3	308	junction_2	396.900211360208	1014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGTGTCTGTCCTTTC	9285	False	NA	-15	True	AATACA	-14	NA	104771709	104730252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
ENSMUSG00000070372.12_1	chr3	-	1335	1	ISM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	40234	158	18690	-158	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGTGTCTGTCCTTTC	NA	False	NA	-15	True	AATACA	-14	NA	104731587	104730252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_104730300_104731600
ENSMUSG00000070392.6_0	chr3	+	514	1	FSM	ENSMUSG00000064220.7	ENSMUST00000078756.7	586	1	45	27	45	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAGATAAAGAGTTGTGT	NA	False	NA	NA	False	AAAAAG	-24	NA	96152857	96153371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96152900_96153400
ENSMUSG00000070394.11_1	chr11	+	443	4	FSM	ENSMUSG00000070394.11	ENSMUST00000094065.5	492	4	26	23	-5	-17	multi-exon	FALSE	canonical	3	1210	junction_1	145.470119115767	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAGGCATATAAA	NA	False	NA	NA	False	AAGAAA	-3	NA	69729375	69730421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69729476_69729745_69729778_69730013_69730095_69730191
ENSMUSG00000070394.11_4	chr11	+	381	4	FSM	ENSMUSG00000070394.11	ENSMUST00000133967.8	421	4	27	13	-14	-12	multi-exon	FALSE	canonical	3	250	junction_1	597.808404832927	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGCATATAAAGAACT	NA	False	NA	NA	False	ATTAAA	-3	NA	69729366	69730426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_69729400_69729745_69729778_69730013_69730095_69730191
ENSMUSG00000070394.11_8	chr11	+	1046	1	NIC	ENSMUSG00000070394.11	novel	421	4	NA	NA	0	-12	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGCATATAAAGAACT	NA	False	NA	NA	False	ATTAAA	-3	NA	69729380	69730426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_69729400_69730400
ENSMUSG00000070407.6_0	chr11	-	4893	2	FSM	ENSMUSG00000070407.6	ENSMUST00000094103.4	4911	2	16	2	16	-2	multi-exon	FALSE	canonical	3	10	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTGAGTATGTTCCTA	NA	False	NA	-4	True	AATAAA	-13	NA	63813100	63776619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_63780572_63812159
ENSMUSG00000070407.6_1	chr11	-	2587	1	ISM	ENSMUSG00000070407.6	ENSMUST00000094103.4	4911	2	33910	2	33910	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTGAGTATGTTCCTA	NA	False	NA	-4	True	AATAAA	-13	NA	63779206	63776619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_63776600_63779200
ENSMUSG00000070420.5_0	chr5	+	2876	6	NNC	ENSMUSG00000070420.5	novel	1796	5	NA	NA	3	955	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	6.67532770731145	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAATTAGTAACTTTCC	2776	False	NA	2	True	AATAAA	-15	NA	145217312	145229043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_145217438_145220161_145220591_145223117_145223320_145224117_145224210_145225103_145225228_145227139
ENSMUSG00000070420.5_1	chr5	+	2850	6	NIC	ENSMUSG00000070420.5	novel	1796	5	NA	NA	2	955	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	14.7431339951857	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAATTAGTAACTTTCC	2775	False	NA	2	True	AATAAA	-15	NA	145217311	145229043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_145217438_145220188_145220591_145223117_145223320_145224117_145224210_145225103_145225228_145227139
ENSMUSG00000070420.5_9	chr5	+	2573	5	FSM	ENSMUSG00000070420.5	ENSMUST00000094116.5	1796	5	176	-953	176	953	multi-exon	FALSE	canonical	3	40	junction_1	6.87386354243376	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGACAATTAGTAACTTT	5801	False	NA	0	True	AATAAA	-13	NA	145220337	145229041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145220591_145223117_145223320_145224117_145224210_145225103_145225228_145227139
ENSMUSG00000070426.13_3	chr7	-	2218	9	FSM	ENSMUSG00000070426.13	ENSMUST00000096639.12	2249	9	16	15	16	0	multi-exon	FALSE	canonical	3	288	junction_4	49.7203114933927	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGGACACGCATTTGC	NA	False	NA	-15	True	AATAAA	-19	NA	101714349	101668358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
ENSMUSG00000070426.13_4	chr7	-	2181	9	NIC	ENSMUSG00000070426.13	novel	2249	9	NA	NA	14	7	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	120.056692337412	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACGCATTTGCCTTTTTT	NA	False	NA	-8	True	AATAAA	-26	NA	101714351	101668351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684623_101688756_101688899_101691833_101691872_101714272
ENSMUSG00000070426.13_6	chr7	-	2332	9	FSM	ENSMUSG00000070426.13	ENSMUST00000089052.11	2344	9	19	-7	19	7	multi-exon	FALSE	canonical	3	30	junction_8	114.601483410993	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACGCATTTGCCTTTTTT	NA	False	NA	-8	True	AATAAA	-26	NA	101714657	101668351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714473
ENSMUSG00000070427.5_1	chr7	-	1725	6	ISM	ENSMUSG00000070427.5	ENSMUST00000094134.5	1311	7	54	4	12	-4	intron_retention	FALSE	canonical	2	3	junction_5	1.78885438199983	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCAAGGTCTCATTTTT	NA	False	NA	NA	False	CATAAA	-8	NA	101667350	101664393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_101665043_101665249_101665398_101665484_101665609_101665956_101666149_101666493_101666559_101666803
ENSMUSG00000070427.5_2	chr7	-	1940	5	ISM	ENSMUSG00000070427.5	ENSMUST00000094134.5	1311	7	89	-1	47	1	intron_retention	FALSE	canonical	3	5	junction_3	1.08972473588517	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGTCTCATTTTTATTTA	NA	False	NA	NA	False	CATAAA	-13	NA	101667315	101664388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_101665043_101665249_101665398_101665484_101665609_101665956_101666149_101666493
ENSMUSG00000070436.13_1	chr7	-	2042	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	126	47	1	-41	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	2135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTATAGGTGTGTGAA	NA	False	NA	43	True	AATAAA	-13	NA	99002320	98994642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
ENSMUSG00000070436.13_12	chr7	-	2082	6	FSM	ENSMUSG00000070436.13	ENSMUST00000207849.2	2128	6	1	45	1	-45	multi-exon	FALSE	canonical	3	30	junction_5	741.154936568596	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAATGTTATAGGTGTG	NA	False	NA	39	True	AATAAA	-9	NA	99002320	98994646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99001030_99001075_99002259
ENSMUSG00000070436.13_3	chr7	-	2126	5	NIC	ENSMUSG00000070436.13	novel	2274	5	NA	NA	-34	-41	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	649.473777376731	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTATAGGTGTGTGAA	NA	False	NA	43	True	AATAAA	-13	NA	99002238	98994642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002093
ENSMUSG00000070461.4_1	chr2	+	2939	1	FSM	ENSMUSG00000070461.4	ENSMUST00000189441.2	3352	1	411	2	103	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACCTGACTGGTCTGGAT	NA	False	NA	NA	False	AATATA	-14	NA	180626127	180629066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_180626100_180629100
ENSMUSG00000070462.5_0	chr7	-	2741	1	FSM	ENSMUSG00000070462.5	ENSMUST00000094216.5	4433	1	44	1648	44	-1648	mono-exon	FALSE	NA	NA	NA	NA	NA	401	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGCTTTTCGCAGTTAC	NA	False	NA	-14	True	ATTAAA	-15	NA	83533469	83530728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_83530700_83533500
ENSMUSG00000070473.5_0	chr5	+	1218	1	FSM	ENSMUSG00000070473.5	ENSMUST00000094245.4	1259	1	41	0	41	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCTGGAGCTTCCTTAT	5082	False	NA	38	True	AATAAA	-18	NA	135015108	135016326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_135015100_135016300
ENSMUSG00000070476.11_0	chr2	+	2221	4	FSM	ENSMUSG00000070476.11	ENSMUST00000094251.11	4541	4	49	2271	-9	1867	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	178056365	178063950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_178056502_178058424_178058537_178059298_178059385_178062063
ENSMUSG00000070493.4_0	chr5	-	728	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	182	5	-15	-2	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	1623	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGGTAGCGTCCTT	2246	False	NA	-8	True	AATAAA	-13	NA	129916129	129910001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
ENSMUSG00000070509.16_0	chr7	+	3587	4	FSM	ENSMUSG00000070509.16	ENSMUST00000094312.12	3586	4	-6	5	5	-5	multi-exon	FALSE	canonical	3	9	junction_1	7.93025150224688	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGATGAGCTGTTGGAG	NA	False	NA	28	True	AGTAAA	-25	NA	73025261	73069642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_73025637_73041128_73041245_73058979_73059498_73067064
ENSMUSG00000070509.16_1	chr7	+	1199	3	ISM	ENSMUSG00000070509.16	ENSMUST00000094312.12	3586	4	-44	9998	-33	450	5prime_fragment	FALSE	canonical	3	9	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGCCTCTAGTGTGGT	NA	False	NA	NA	False	TATAAA	-21	NA	73025223	73059649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_73025637_73041128_73041245_73058979
ENSMUSG00000070509.16_3	chr7	+	3330	3	FSM	ENSMUSG00000070509.16	ENSMUST00000139780.3	3371	3	27	14	-22	-14	multi-exon	FALSE	canonical	3	22	junction_1	3	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTTCTTTTAGATGAG	NA	False	NA	19	True	AGTAAA	-16	NA	73041001	73069633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_73041245_73058979_73059498_73067064
ENSMUSG00000070509.16_6	chr7	+	233	1	ISM	ENSMUSG00000070509.16	ENSMUST00000119206.3	3481	3	44157	1	28390	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAGCTGTTGGAGTTTA	NA	False	NA	32	True	AGTAAA	-29	NA	73069413	73069646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_73069400_73069600
ENSMUSG00000070520.5_1	chr7	-	1289	1	FSM	ENSMUSG00000070520.5	ENSMUST00000094331.5	5946	1	-3	4660	-3	-4660	mono-exon	FALSE	NA	NA	NA	NA	NA	334	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATAAAATTGTTTTAGC	NA	False	NA	-28	True	AATAAA	-16	NA	64522748	64521459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_64521500_64522700
ENSMUSG00000070526.3_0	chr7	-	2557	1	FSM	ENSMUSG00000070526.3	ENSMUST00000094339.3	2640	1	77	6	77	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTATACTTAAGCCTAACA	NA	False	NA	NA	False	AATAAA	-25	NA	62114181	62111624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_62111600_62114200
ENSMUSG00000070527.4_0	chr7	-	2559	1	FSM	ENSMUSG00000070527.4	ENSMUST00000094340.4	2547	1	-13	1	-13	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTGACTCTTTTTTTAA	NA	False	NA	-1	True	AATAAA	-17	NA	62069900	62067341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_62067300_62069900
ENSMUSG00000070544.7_0	chr2	+	3754	21	FSM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	94	8	2	-8	multi-exon	FALSE	canonical	3	359	junction_7	40.333949719808	816	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGAAACTTAGCGTCTGC	NA	False	NA	15	True	AATAAA	-13	NA	160487901	160564676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371
ENSMUSG00000070565.12_0	chr1	-	3143	1	ISM	ENSMUSG00000070565.12	ENSMUST00000078308.13	10047	18	274263	8	43109	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTAAGAGTTGCTACTAT	NA	False	NA	-4	True	AATAAA	-20	NA	156965902	156962759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_156962800_156965900
ENSMUSG00000070565.12_3	chr1	-	4808	18	FSM	ENSMUSG00000070565.12	ENSMUST00000078308.13	10047	18	0	5239	0	113	multi-exon	FALSE	canonical	0	0	junction_6	3.97135068932194	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTATTTTATTATTGTT	4366	False	NA	NA	False	AATATA	-39	NA	157240165	156967990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156968446_156973759_156973848_156975199_156975403_156977342_156977478_156984475_156985338_156986228_156986429_156988694_156988897_156991272_156991510_156992176_156992322_157001712_157001858_157003232_157003788_157005215_157005315_157006668_157006823_157020316_157020427_157057608_157057716_157114300_157114425_157126706_157126835_157239306
ENSMUSG00000070565.12_4	chr1	-	5075	18	FSM	ENSMUSG00000070565.12	ENSMUST00000132699.8	4013	18	-594	-468	67	468	multi-exon	FALSE	canonical	1	2	junction_9	3.69512912342104	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAAAACTAGACTAGGAAT	4433	False	NA	NA	False	GATAAA	-14	NA	157240098	156967635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_156968446_156973759_156973848_156975199_156975403_156977342_156977478_156984475_156985338_156986228_156986408_156988694_156988897_156991272_156991510_156992176_156992322_157001712_157001858_157003232_157003788_157005215_157005315_157006668_157006823_157020316_157020427_157057608_157057716_157114300_157114425_157126706_157126835_157239306
ENSMUSG00000070565.12_5	chr1	-	2735	11	ISM	ENSMUSG00000070565.12	ENSMUST00000132699.8	4013	18	-598	23034	63	12411	5prime_fragment	FALSE	canonical	1	2	junction_2	4.0853396431631	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATTAAGCTCTCG	4429	False	NA	NA	False	AATAAA	-14	NA	157240102	156991137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_156991510_156992176_156992322_157001712_157001858_157003232_157003788_157005215_157005315_157006668_157006823_157020316_157020427_157057608_157057716_157114300_157114425_157126706_157126835_157239306
ENSMUSG00000070572.8_0	chr4	+	558	1	FSM	ENSMUSG00000070572.8	ENSMUST00000117987.2	378	1	-20	-160	-20	160	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	1894	False	NA	NA	False	ATTAAA	-6	NA	149541765	149542323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_149541800_149542300
ENSMUSG00000070576.5_0	chr5	+	4623	2	FSM	ENSMUSG00000070576.5	ENSMUST00000094463.5	6860	2	2226	11	2226	-11	multi-exon	FALSE	canonical	3	6	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGGGCATGTTTGTGG	NA	False	NA	NA	False	AATAAA	-15	NA	111567533	111604888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_111569750_111602481
ENSMUSG00000070604.6_3	chr7	+	4455	15	Fusion	ENSMUSG00000070604.6_ENSMUSG00000004610.5	novel	3836	10	NA	NA	4	-6	multi-exon	TRUE	canonical	0	0	junction_7	875.135371452524	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAATGTGCTAGTGCCTG	1959	False	NA	NA	False	NA	NA	NA	43093557	43121437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43112560_43112697_43112783_43113600_43114229_43114524_43114644_43114930_43115789_43116045_43116850_43117130_43117377_43117675_43118079_43118194_43118383_43118539_43120224
ENSMUSG00000070604.6_6	chr7	+	2662	6	ISM	ENSMUSG00000070604.6	ENSMUST00000107977.4	3836	10	2866	6	303	-6	3prime_fragment	FALSE	canonical	2	8	junction_2	1.62480768092719	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAATGTGCTAGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	43115440	43121437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43116045_43116850_43117130_43117377_43117675_43118079_43118194_43118383_43118539_43120224
ENSMUSG00000070605.5_106	chr4	+	2966	1	ISM	ENSMUSG00000070605.5	ENSMUST00000105733.3	4550	4	17436	868	17436	-868	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAGGCCTATGCAATTAT	NA	False	NA	NA	False	NA	NA	NA	146550915	146553881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_146550900_146553900
ENSMUSG00000070605.5_30	chr4	+	688	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33244	-4085	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	272.465337244942	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACAATGACTCTGTAAA	NA	False	NA	NA	False	AAAAAG	-32	NA	146500235	146550664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_146500373_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_44	chr4	+	861	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33230	-4069	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	278.693810480247	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACAGTTTAACTTTGTTT	NA	False	NA	NA	False	AATACA	-10	NA	146500249	146550680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_146500544_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_84	chr4	+	2627	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16638	-2060	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	291.29827926028	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATTTAATTCAAATGAGC	1856	False	NA	NA	False	AATAAA	-16	NA	146516841	146552689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_146516986_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070610.5_0	chr4	+	1811	1	FSM	ENSMUSG00000070610.5	ENSMUST00000118978.2	1389	1	-111	-311	-111	311	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	144313702	144315513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_144313700_144315500
ENSMUSG00000070618.11_0	chr4	+	2091	4	Fusion	ENSMUSG00000096154.3_ENSMUSG00000070618.11_ENSMUSG00000095409.2	novel	2056	3	NA	NA	-38	-20	multi-exon	TRUE	canonical	1	2	junction_1	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAATAATAATACCA	NA	False	NA	NA	False	NA	NA	NA	143237874	143300348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_143237929_143281992_143282307_143298345_143298937_143299216
ENSMUSG00000070619.6_0	chr4	+	2092	4	FSM	ENSMUSG00000070619.6	ENSMUST00000094526.5	2094	4	-15	17	-15	-17	multi-exon	TRUE	canonical	1	3	junction_3	3.09120616516523	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAATAATAATAATA	NA	False	NA	NA	False	NA	NA	NA	144084496	144090972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_144084551_144088178_144088493_144088970_144089562_144089839
ENSMUSG00000070637.3_0	chr4	-	878	2	FSM	ENSMUSG00000070637.3	ENSMUST00000094544.3	905	2	20	7	20	-7	multi-exon	FALSE	canonical	3	14	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGAGCGAAGGGAGTCT	NA	False	NA	NA	False	AATAAA	-22	NA	141163396	141159989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141160768_141163296
ENSMUSG00000070639.6_3	chr5	+	6682	5	FSM	ENSMUSG00000070639.6	ENSMUST00000112707.3	6726	5	23	21	23	-21	multi-exon	FALSE	canonical	3	31	junction_1	5.11737237261468	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAGATGAATCACTAGA	3391	False	NA	-8	True	AATAAA	-5	NA	105563663	105637919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_105563779_105616662_105616718_105624051_105624151_105627632_105629795_105633668
ENSMUSG00000070639.6_6	chr5	+	5388	2	ISM	ENSMUSG00000070639.6	ENSMUST00000112707.3	6726	5	65017	21	65017	-21	3prime_fragment	FALSE	canonical	3	44	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAGATGAATCACTAGA	7616	False	NA	-8	True	AATAAA	-5	NA	105628657	105637919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_105629795_105633668
ENSMUSG00000070639.6_7	chr5	+	2759	1	ISM	ENSMUSG00000070639.6	ENSMUST00000112707.3	6726	5	71530	11	71530	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCACTAGAATCTGATTGG	NA	False	NA	2	True	AATAAA	-15	NA	105635170	105637929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_105635200_105637900
ENSMUSG00000070643.12_0	chr1	-	3732	14	NIC	ENSMUSG00000070643.12	novel	3693	14	NA	NA	-43	-1	combination_of_known_junctions	FALSE	canonical	3	41	junction_8	19.4802281798964	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGACGTGCCCTTTCTCTGC	NA	False	NA	-9	True	AATAAA	-14	NA	133352158	133310041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133311663_133312194_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316299_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
ENSMUSG00000070643.12_12	chr1	-	4273	13	NIC	ENSMUSG00000070643.12	novel	3693	14	NA	NA	-49	-1	intron_retention	FALSE	canonical	3	38	junction_7	18.8252194911212	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGACGTGCCCTTTCTCTGC	NA	False	NA	-9	True	AATAAA	-14	NA	133352164	133310041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316302_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
ENSMUSG00000070643.12_2	chr1	-	4276	13	NIC	ENSMUSG00000070643.12	novel	3693	14	NA	NA	-55	-1	intron_retention	FALSE	canonical	3	41	junction_7	18.2412459978905	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGACGTGCCCTTTCTCTGC	NA	False	NA	-9	True	AATAAA	-14	NA	133352170	133310041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316299_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
ENSMUSG00000070643.12_3	chr1	-	3742	14	FSM	ENSMUSG00000070643.12	ENSMUST00000153799.8	3693	14	-50	1	-50	-1	multi-exon	FALSE	canonical	3	38	junction_8	19.9582404271205	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGACGTGCCCTTTCTCTGC	NA	False	NA	-9	True	AATAAA	-14	NA	133352165	133310041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_133311663_133312194_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316302_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
ENSMUSG00000070643.12_7	chr1	-	1519	1	ISM	ENSMUSG00000070643.12	ENSMUST00000144386.8	3179	13	9396	1	1704	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGACGTGCCCTTTCTCTGC	NA	False	NA	-9	True	AATAAA	-14	NA	133311560	133310041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133310000_133311600
ENSMUSG00000070644.14_0	chr1	+	2111	8	FSM	ENSMUSG00000070644.14	ENSMUST00000135222.9	2297	8	166	20	162	0	multi-exon	FALSE	canonical	3	61	junction_5	9.79379228628721	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACGGTCTTGGAAGGACA	NA	False	NA	5	True	ATTAAA	-15	NA	133291475	133308054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_133291757_133293313_133293574_133296487_133296611_133300872_133301016_133302264_133302349_133304643_133304790_133306186_133306261_133307054
ENSMUSG00000070644.14_1	chr1	+	2158	7	NIC	ENSMUSG00000070644.14	novel	2297	8	NA	NA	40	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	29.0555024431212	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACGGTCTTGGAAGGAC	NA	False	NA	4	True	ATTAAA	-14	NA	133291353	133308053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_133291757_133293313_133293574_133296487_133296611_133300872_133301016_133302264_133302349_133304643_133304790_133307054
ENSMUSG00000070644.14_4	chr1	+	3666	7	FSM	ENSMUSG00000070644.14	ENSMUST00000129213.2	2074	7	-1594	2	162	-2	multi-exon	FALSE	canonical	3	61	junction_4	9.46484724300046	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATACGGTCTTGGAAGGA	NA	False	NA	3	True	ATTAAA	-13	NA	133291475	133308052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_133293574_133296487_133296611_133300872_133301016_133302264_133302349_133304643_133304790_133306186_133306261_133307054
ENSMUSG00000070644.14_6	chr1	+	3476	5	ISM	ENSMUSG00000070644.14	ENSMUST00000129213.2	2074	7	5773	1	3818	-1	3prime_fragment	FALSE	canonical	3	61	junction_2	9.73075022801428	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACGGTCTTGGAAGGAC	NA	False	NA	4	True	ATTAAA	-14	NA	133298842	133308053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_133301016_133302264_133302349_133304643_133304790_133306186_133306261_133307054
ENSMUSG00000070687.12_0	chr4	+	2837	2	FSM	ENSMUSG00000070687.12	ENSMUST00000133818.2	363	2	-48	-2426	-48	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGCGAGCAGTGAAGTC	4640	False	NA	NA	False	AATAAA	-10	NA	136151874	136171707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_136152062_136169057
ENSMUSG00000070691.11_0	chr4	+	3646	5	FSM	ENSMUSG00000070691.11	ENSMUST00000119564.2	1855	5	8	-1799	8	-10	multi-exon	FALSE	canonical	1	2	junction_2	2.04633819296811	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGACCCGCGTCAGGCTTC	6170	False	NA	NA	False	AATATA	-13	NA	134879814	134905291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134880368_134882592_134882750_134890541_134890647_134898419_134898570_134902610
ENSMUSG00000070692.7_0	chr2	+	148	1	FSM	ENSMUSG00000070692.7	ENSMUST00000117447.2	399	1	265	-14	265	14	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAAAAAAAATGCCTCA	NA	False	NA	-7	True	AATAAA	-14	NA	122050738	122050886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_122050700_122050900
ENSMUSG00000070697.5_0	chr5	+	1617	1	FSM	ENSMUSG00000070697.5	ENSMUST00000090413.6	1629	1	1	11	1	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	612	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAAGTGATTGTGTTTG	NA	False	NA	9	True	AATAAA	-11	NA	88702321	88703938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_88702300_88703900
ENSMUSG00000070699.6_0	chr7	+	1856	16	FSM	ENSMUSG00000070699.6	ENSMUST00000094632.6	1868	16	-10	22	0	-22	multi-exon	FALSE	canonical	3	180	junction_5	21.0516824347446	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGTCTTCTGGATCCA	268	False	NA	3	True	AATAAA	-11	NA	28441416	28453274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28446976_28447256_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
ENSMUSG00000070699.6_2	chr7	+	2141	15	NIC	ENSMUSG00000070699.6	novel	1868	16	NA	NA	-1	-19	intron_retention	TRUE	canonical	3	180	junction_5	20.6265382852444	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTCTTCTGGATCCATGA	267	False	NA	6	True	AATAAA	-14	NA	28441415	28453277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
ENSMUSG00000070705.4_1	chr7	+	1749	1	FSM	ENSMUSG00000070705.4	ENSMUST00000094651.4	1751	1	3	-1	3	1	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGGGTTGTTTGAAAA	NA	False	NA	NA	False	AATGAA	-16	NA	27977166	27978915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27977200_27978900
ENSMUSG00000070708.6_0	chr2	-	876	2	Genic_Genomic	ENSMUSG00000070708.6	novel	822	1	NA	NA	-1750	-5	multi-exon	FALSE	canonical	3	698	junction_1	0	179	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTCCGGGCTGTGCTG	919	False	NA	-8	True	AATAAA	-12	NA	162931525	162928958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_162929768_162931458
ENSMUSG00000070708.6_1	chr2	-	751	2	Genic_Genomic	ENSMUSG00000070708.6	novel	822	1	NA	NA	-1750	-4	multi-exon	FALSE	canonical	3	735	junction_1	0	142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACGGTCCGGGCTGTGCTGG	919	False	NA	-7	True	AATAAA	-13	NA	162931525	162928957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_162929642_162931458
ENSMUSG00000070709.13_0	chr7	-	7281	5	NIC	ENSMUSG00000070709.13	novel	5158	4	NA	NA	9	1975	combination_of_known_junctions	FALSE	canonical	3	7	junction_4	17.9913173503221	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTAGCTTGTCTTGGTTC	NA	False	NA	NA	False	NA	NA	NA	27628876	27604841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27611687_27620121_27620221_27625708_27625836_27626825_27626879_27628719
ENSMUSG00000070709.13_2	chr7	-	868	1	ISM	ENSMUSG00000070709.13	ENSMUST00000098639.9	5158	4	19868	1303	17896	-1303	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGCATTTGAATGGTC	NA	False	NA	NA	False	NA	NA	NA	27608987	27608119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27608100_27609000
ENSMUSG00000070709.13_4	chr7	-	7472	8	Fusion	ENSMUSG00000070709.13_ENSMUSG00000063047.10	novel	3354	5	NA	NA	-7	1979	multi-exon	FALSE	canonical	2	5	junction_4	28.977824033462	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTGTCTTGGTTCCATT	NA	False	NA	NA	False	NA	NA	NA	27678579	27604837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_-_27611687_27620121_27620221_27625708_27625836_27626825_27626879_27671047_27671147_27673143_27673271_27674177_27674231_27678514
ENSMUSG00000070713.6_0	chr8	-	460	1	FSM	ENSMUSG00000070713.6	ENSMUST00000075602.8	1151	1	-16	707	-16	-707	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTACTTTTTTTTTTTTTA	NA	False	NA	NA	False	TATAAA	-15	NA	73059120	73058660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_73058700_73059100
ENSMUSG00000070720.5_0	chr4	+	2429	3	NNC	ENSMUSG00000070720.5	novel	961	2	NA	NA	-1277	815	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGTGTGCCTGAGTCA	NA	False	NA	NA	False	AATAAA	-19	NA	131647233	131651266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_131647372_131648510_131648597_131649061
ENSMUSG00000070720.5_1	chr4	+	2888	2	FSM	ENSMUSG00000070720.5	ENSMUST00000238733.2	961	2	-597	-1330	-597	815	multi-exon	FALSE	canonical	2	5	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGTGTGCCTGAGTCA	NA	False	NA	NA	False	AATAAA	-19	NA	131647913	131651266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_131648597_131649061
ENSMUSG00000070730.12_0	chr2	-	2168	13	FSM	ENSMUSG00000070730.12	ENSMUST00000094695.12	2249	13	75	6	5	-6	multi-exon	TRUE	canonical	3	215	junction_12	29.1989107483291	387	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGGATATGTTTTGACTG	NA	False	NA	NA	False	AATAAA	-13	NA	118987440	118967487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973108_118973170_118976818_118976922_118977789_118978076_118983856_118984001_118984370_118984564_118986838_118987033_118987387
ENSMUSG00000070732.3_1	chr1	+	3361	16	FSM	ENSMUSG00000070732.3	ENSMUST00000094698.2	3851	16	-13	503	1	-1	multi-exon	TRUE	canonical	3	84	junction_2	27.1317771871533	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCAAGACTCCAAGCTGTA	4251	False	NA	31	True	TATAAA	-19	NA	91072811	91098014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_91072892_91077804_91077896_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
ENSMUSG00000070732.3_3	chr1	+	3268	15	NIC	ENSMUSG00000070732.3	novel	3851	16	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	30.8108945746435	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCAAGACTCCAAGCTGT	4252	False	NA	30	True	TATAAA	-18	NA	91072812	91098013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_91072892_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
ENSMUSG00000070732.3_36	chr1	+	2860	14	ISM	ENSMUSG00000070732.3	ENSMUST00000094698.2	3851	16	7446	449	7446	53	3prime_fragment	FALSE	canonical	3	98	junction_2	21.6385039240472	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCATCATTAATAAGT	6568	False	NA	85	True	TTTAAA	-22	NA	91080270	91098068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
ENSMUSG00000070733.14_0	chr5	-	11511	64	NIC	ENSMUSG00000070733.14	novel	11340	63	NA	NA	2	128	combination_of_known_junctions	FALSE	canonical	3	23	junction_22	11.5600462231899	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTTGTGTGGTATTTT	NA	False	NA	-3	True	AATAAA	-15	NA	73413960	73177536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688_73198937_73204862_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058_73212221_73212867_73213066_73215066_73215208_73216721_73216893_73221848_73221947_73222281_73222890_73224616_73224712_73226066_73226258_73227225_73227348_73228447_73228653_73230078_73230265_73231184_73231289_73231971_73232123_73233230_73233344_73234000_73234086_73238306_73238476_73240139_73240281_73240470_73240731_73242689_73242859_73243869_73243970_73244220_73244376_73245711_73245823_73246437_73246599_73247943_73248117_73250465_73250558_73252758_73252817_73253616_73253742_73254716_73254913_73255501_73255771_73257288_73257376_73257628_73257815_73258796_73259035_73262017_73262126_73265305_73265439_73265812_73265985_73267528_73267616_73269705_73269815_73270091_73270196_73272598_73272644_73275826_73275929_73277160_73277260_73279206_73279300_73279555_73279725_73282025_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293664_73293719_73305359_73305566_73352328_73352457_73378250_73378416_73413742
ENSMUSG00000070733.14_1	chr5	-	1292	1	ISM	ENSMUSG00000070733.14	ENSMUST00000202697.4	5743	21	49690	207	13557	128	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTTGTGTGGTATTTT	3819	False	NA	-3	True	AATAAA	-15	NA	73178828	73177536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73177500_73178800
ENSMUSG00000070733.14_10	chr5	-	4375	17	ISM	ENSMUSG00000070733.14	ENSMUST00000202697.4	5743	21	6637	338	695	1	3prime_fragment	FALSE	canonical	3	30	junction_13	5.09863645987827	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGTGTCCTTTAAATTA	NA	False	NA	-3	True	GATAAA	-28	NA	73221881	73177667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688_73198937_73204862_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058_73212221_73212867_73213066_73215066_73215208_73216721_73216893_73221848
ENSMUSG00000070733.14_16	chr5	-	3899	13	ISM	ENSMUSG00000070733.14	ENSMUST00000202697.4	5743	21	16358	211	7	124	3prime_fragment	FALSE	canonical	3	35	junction_1	4.08928138212843	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTTGGTTTGTGTGGTA	482	False	NA	-7	True	AATAAA	-11	NA	73212160	73177540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688_73198937_73204862_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058
ENSMUSG00000070733.14_2	chr5	-	2186	2	ISM	ENSMUSG00000070733.14	ENSMUST00000202806.4	2707	8	12458	-131	12458	127	3prime_fragment	FALSE	canonical	3	35	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTTTGTGTGGTATTT	2720	False	NA	-4	True	AATAAA	-14	NA	73179927	73177537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73179641_73179844
ENSMUSG00000070733.14_21	chr5	-	4285	15	ISM	ENSMUSG00000070733.14	ENSMUST00000202697.4	5743	21	13324	211	-3027	124	3prime_fragment	FALSE	canonical	3	30	junction_13	5.12695955569325	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTTGGTTTGTGTGGTA	NA	False	NA	-7	True	AATAAA	-11	NA	73215194	73177540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688_73198937_73204862_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058_73212221_73212867_73213066_73215066
ENSMUSG00000070733.14_26	chr5	-	4828	18	ISM	ENSMUSG00000070733.14	ENSMUST00000202697.4	5743	21	5836	351	-106	-1	3prime_fragment	FALSE	canonical	3	30	junction_13	5.32994413650555	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGTACTGTAAATGGT	NA	False	NA	-16	True	GATAAA	-15	NA	73222682	73177680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688_73198937_73204862_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058_73212221_73212867_73213066_73215066_73215208_73216721_73216893_73221848_73221947_73222281
ENSMUSG00000070733.14_27	chr5	-	4062	14	ISM	ENSMUSG00000070733.14	ENSMUST00000202697.4	5743	21	15552	207	-799	128	3prime_fragment	FALSE	canonical	3	30	junction_13	5.12217594294969	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTTGTGTGGTATTTT	NA	False	NA	-3	True	AATAAA	-15	NA	73212966	73177536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688_73198937_73204862_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058_73212221_73212867
ENSMUSG00000070733.14_3	chr5	-	3065	8	ISM	ENSMUSG00000070733.14	ENSMUST00000146953.8	3088	9	5526	-146	5526	131	3prime_fragment	FALSE	canonical	3	35	junction_1	3.8438925848782	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTGTGGTATTTTAAG	NA	False	NA	0	True	AATAAA	-18	NA	73198818	73177533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688
ENSMUSG00000070733.14_41	chr5	-	2154	12	FSM	ENSMUSG00000070733.14	ENSMUST00000148433.8	1899	12	-202	-53	-8	53	multi-exon	FALSE	canonical	3	44	junction_1	9.84759902776155	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAACCGTTCCCTGTGCCG	NA	False	NA	NA	False	NA	NA	NA	73413970	73276546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_73277260_73279206_73279300_73279555_73279725_73282025_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293664_73293719_73305359_73305566_73352328_73352457_73378250_73378416_73413742
ENSMUSG00000070733.14_43	chr5	-	2697	6	ISM	ENSMUSG00000070733.14	ENSMUST00000146953.8	3088	9	13286	-146	1327	131	3prime_fragment	FALSE	canonical	3	35	junction_1	4.4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTGTGGTATTTTAAG	896	False	NA	0	True	AATAAA	-18	NA	73191058	73177533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938
ENSMUSG00000070733.14_60	chr5	-	7185	48	NIC	ENSMUSG00000070733.14	novel	11340	63	NA	NA	-3	-8	combination_of_known_junctions	FALSE	canonical	3	23	junction_6	12.9553678938782	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGACCCTCCTGAGTCT	NA	False	NA	NA	False	AATAAA	-12	NA	73413965	73221706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_73221947_73222281_73222890_73224616_73224712_73226066_73226258_73227225_73227348_73228447_73228653_73230078_73230265_73231184_73231289_73231971_73232123_73233230_73233344_73234000_73234086_73238306_73238476_73240139_73240281_73240470_73240731_73242689_73242859_73243869_73243970_73244220_73244376_73245711_73245823_73246437_73246599_73247943_73248117_73250465_73250558_73252758_73252817_73253616_73253742_73254716_73254913_73255501_73255771_73257288_73257376_73257628_73257815_73258796_73259035_73262017_73262126_73265305_73265439_73265812_73265985_73267528_73267616_73269705_73269815_73270091_73270196_73272598_73272644_73275826_73275929_73277160_73277260_73279206_73279300_73279555_73279725_73282025_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293664_73293719_73305359_73305566_73352328_73352457_73378250_73378416_73413742
ENSMUSG00000070733.14_66	chr5	-	1916	13	ISM	ENSMUSG00000070733.14	ENSMUST00000101127.12	11340	63	-8	97888	-8	115	5prime_fragment	FALSE	canonical	3	41	junction_1	11.2875915155636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAAAACCCTTCATGTAG	NA	False	NA	NA	False	AATAAA	-14	NA	73413970	73275552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_73275929_73277160_73277260_73279206_73279300_73279555_73279725_73282025_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293664_73293719_73305359_73305566_73352328_73352457_73378250_73378416_73413742
ENSMUSG00000070737.11_1	chr4	+	1111	3	FSM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	9	0	9	0	multi-exon	FALSE	canonical	3	98	junction_2	3.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019847	127023437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_127019987_127021611_127021793_127022646
ENSMUSG00000070737.11_2	chr4	+	1029	3	NNC	ENSMUSG00000070737.11	novel	1120	3	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	45	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019836	127023437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_127019894_127021611_127021793_127022646
ENSMUSG00000070737.11_3	chr4	+	1961	2	ISM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	7	6	7	-6	intron_retention	FALSE	canonical	3	105	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGCTGTGTTGTACTTCG	NA	False	NA	1	True	NA	NA	NA	127019845	127023431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_127019987_127021611
ENSMUSG00000070738.11_0	chr1	+	5701	30	FSM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	-7	1	-7	-1	multi-exon	FALSE	canonical	3	256	junction_21	37.602590545009	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGCATTCCTGTCCTCA	4063	False	NA	19	True	AATAAA	-23	NA	87781001	87872211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821_87842927_87843213_87843347_87844090_87844198_87844528_87844655_87845613_87845717_87846280_87846444_87849294_87849404_87851793_87851934_87852201_87852287_87853415_87853511_87853594_87853695_87853772_87854047_87854587_87854747_87855406_87855533_87857462_87857560_87859653_87859765_87861827_87861925_87862115_87862224_87863059_87863174_87864005_87864141_87864470_87864623_87865875_87865988_87866067_87866161_87866917_87867038_87867898_87868029_87869090_87869222_87870104
ENSMUSG00000070738.11_5	chr1	+	5562	29	NIC	ENSMUSG00000070738.11	novel	5695	30	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	29	junction_28	64.6690554646801	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGCATTCCTGTCCTCA	4071	False	NA	19	True	AATAAA	-23	NA	87781009	87872211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821_87842927_87843213_87843347_87844090_87844198_87844528_87844655_87845613_87845717_87846280_87846444_87849294_87849404_87851793_87851934_87852201_87852287_87853415_87853511_87853594_87853695_87853772_87854047_87854587_87854747_87855406_87855533_87857462_87857560_87859653_87859765_87861827_87861925_87862115_87862224_87863059_87863174_87864005_87864141_87864470_87864623_87865875_87865988_87866067_87866161_87866917_87867038_87867898_87868029_87870104
ENSMUSG00000070738.11_81	chr1	+	1724	1	ISM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	89479	1	4381	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGCATTCCTGTCCTCA	5384	False	NA	19	True	AATAAA	-23	NA	87870487	87872211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_87870500_87872200
ENSMUSG00000070780.12_0	chr5	-	5058	7	NIC	ENSMUSG00000070780.12	novel	4703	7	NA	NA	-130	-5	combination_of_known_junctions	FALSE	canonical	2	8	junction_6	12.9282206389313	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAGTTTCAAGACTTTC	NA	False	NA	-8	True	AATAAA	-10	NA	66308796	66173904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66255049_66255132_66308395
ENSMUSG00000070780.12_1	chr5	-	4792	7	ISM	ENSMUSG00000070780.12	ENSMUST00000167950.8	4895	8	251	5	109	-5	3prime_fragment	FALSE	canonical	3	18	junction_6	10.0235833025033	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAGTTTCAAGACTTTC	NA	False	NA	-8	True	AATAAA	-10	NA	66309016	66173904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66255049_66255132_66308881
ENSMUSG00000070780.12_10	chr5	-	4827	8	NIC	ENSMUSG00000070780.12	novel	4895	8	NA	NA	207	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_7	16.1927169317769	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAGTTTCAAGACTTTC	NA	False	NA	-8	True	AATAAA	-10	NA	66308918	66173904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66255049_66255132_66308395_66308529_66308881
ENSMUSG00000070780.12_2	chr5	-	5063	7	FSM	ENSMUSG00000070780.12	ENSMUST00000200775.4	3180	7	157	-2040	35	-5	multi-exon	FALSE	canonical	0	0	junction_6	15.5071668019088	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAGTTTCAAGACTTTC	NA	False	NA	-8	True	AATAAA	-10	NA	66308264	66173904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66255049_66255132_66307858
ENSMUSG00000070780.12_4	chr5	-	1810	1	ISM	ENSMUSG00000070780.12	ENSMUST00000113726.8	4703	7	79825	8	36186	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCAAGACTTTCTTTTC	NA	False	NA	-3	True	AATAAA	-15	NA	66175709	66173899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_66173900_66175700
ENSMUSG00000070780.12_5	chr5	-	3128	3	ISM	ENSMUSG00000070780.12	ENSMUST00000094757.9	4643	6	56006	1	29558	0	3prime_fragment	FALSE	canonical	3	39	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCAAGACTTTCTTTTC	NA	False	NA	-3	True	AATAAA	-15	NA	66182337	66173899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_66176780_66179970_66180177_66182295
ENSMUSG00000070780.12_6	chr5	-	3974	4	ISM	ENSMUSG00000070780.12	ENSMUST00000094757.9	4643	6	54185	6	27737	-5	3prime_fragment	FALSE	canonical	3	38	junction_3	4.02768199119819	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAGTTTCAAGACTTTC	NA	False	NA	-8	True	AATAAA	-10	NA	66184158	66173904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472
ENSMUSG00000070780.12_7	chr5	-	4648	6	NIC	ENSMUSG00000070780.12	novel	4643	6	NA	NA	-2	-5	combination_of_known_junctions	FALSE	canonical	2	8	junction_5	13.4313067123047	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAGTTTCAAGACTTTC	2647	False	NA	-8	True	AATAAA	-10	NA	66211897	66173904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66211824
ENSMUSG00000070802.6_0	chr7	+	4120	1	FSM	ENSMUSG00000070802.6	ENSMUST00000094807.6	4147	1	18	9	18	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTTGATTTTTCTCTGT	NA	False	NA	NA	False	AATGAA	-16	NA	16678624	16682744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16678600_16682700
ENSMUSG00000070803.7_0	chr4	+	1245	1	FSM	ENSMUSG00000070803.7	ENSMUST00000094814.6	1249	1	0	4	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATTTTGAGTTTCCATTT	6119	False	NA	5	True	AATAAA	-14	NA	120523768	120525013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_120523800_120525000
ENSMUSG00000070808.5_3	chr7	-	5801	14	NIC	ENSMUSG00000070808.5	novel	5975	15	NA	NA	-9	-6	combination_of_known_splicesites	TRUE	canonical	2	10	junction_3	4.77419096897935	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTACTCAGGCCCCCTC	NA	False	NA	NA	False	ATTAAA	-21	NA	15781855	15704602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_15706815_15709007_15709111_15709290_15709386_15709589_15709739_15710975_15711038_15712613_15712724_15712939_15713121_15713275_15713912_15721403_15723366_15727004_15727071_15730325_15730369_15730475_15730522_15733318_15733420_15781820
ENSMUSG00000070808.5_4	chr7	-	4119	6	NIC	ENSMUSG00000070808.5	novel	5975	15	NA	NA	-3	-13031	intron_retention	FALSE	canonical	3	13	junction_2	5.19230199429887	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTACTTGTTCTATGA	NA	False	NA	NA	False	NA	NA	NA	15781849	15719531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_15723366_15727004_15727071_15730325_15730369_15730475_15730522_15733318_15733420_15781820
ENSMUSG00000070808.5_7	chr7	-	1588	1	ISM	ENSMUSG00000070808.5	ENSMUST00000210713.2	6623	8	16140	6	6460	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTACTCAGGCCCCCTC	NA	False	NA	NA	False	ATTAAA	-21	NA	15706190	15704602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_15704600_15706200
ENSMUSG00000070814.18_0	chr7	-	3290	4	NNC	ENSMUSG00000070814.18	novel	3346	4	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	7.78888096369861	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCAGGCTGAGTTCGTG	1881	False	NA	-6	True	AATAAA	-14	NA	13012410	12992894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_12995567_13003260_13003574_13011071_13011355_13012388
ENSMUSG00000070814.18_1	chr7	-	3358	4	NIC	ENSMUSG00000070814.18	novel	3346	4	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	5.43650214343336	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCAGGCTGAGTTCGTG	1932	False	NA	-6	True	AATAAA	-14	NA	13012359	12992894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_12995567_13003260_13003574_13011071_13011355_13012269
ENSMUSG00000070814.18_13	chr7	-	3440	3	FSM	ENSMUSG00000070814.18	ENSMUST00000119139.10	3985	3	544	1	544	0	multi-exon	FALSE	canonical	3	9	junction_1	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCAGGCTGAGTTCGTG	2765	False	NA	-6	True	AATAAA	-14	NA	13011526	12992894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12995567_13003260_13003574_13011071
ENSMUSG00000070814.18_14	chr7	-	2660	1	Genic_Genomic	ENSMUSG00000070814.18	novel	NA	NA	NA	NA	11767	2009	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATAAAGCACTAACTGCC	9741	False	NA	NA	False	NA	NA	NA	13000303	12997643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_12997600_13000300
ENSMUSG00000070814.18_16	chr7	-	4833	2	FSM	ENSMUSG00000070814.18	ENSMUST00000137574.2	4151	2	2	-684	2	575	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTTTACTATTTTTAAA	1945	False	NA	NA	False	AATAGA	-16	NA	13012346	13006598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_13011355_13012269
ENSMUSG00000070814.18_17	chr7	-	4238	2	FSM	ENSMUSG00000070814.18	ENSMUST00000140530.2	4208	2	-36	6	15	-6	multi-exon	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACTACTGTATATTATT	1659	False	NA	NA	False	NA	NA	NA	13012632	13007179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_13011355_13012569
ENSMUSG00000070814.18_2	chr7	-	3613	1	Genic_Genomic	ENSMUSG00000070814.18	novel	NA	NA	NA	NA	15568	4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTGAGTTCGTGGCTTC	1689	False	NA	-1	True	AATAAA	-19	NA	12996502	12992889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_12992900_12996500
ENSMUSG00000070814.18_5	chr7	-	3305	4	FSM	ENSMUSG00000070814.18	ENSMUST00000108532.11	3346	4	41	0	3	0	multi-exon	FALSE	canonical	3	9	junction_1	5.18544972870135	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCAGGCTGAGTTCGTG	1685	False	NA	-6	True	AATAAA	-14	NA	13012606	12992894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12995567_13003260_13003574_13011071_13011355_13012569
ENSMUSG00000070822.6_0	chr7	-	3683	7	FSM	ENSMUSG00000070822.6	ENSMUST00000211392.2	3709	7	21	5	21	-5	multi-exon	FALSE	canonical	3	19	junction_4	11.5854314646552	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATATTATGCCTCATTG	NA	False	NA	-6	True	AATAAA	-15	NA	12514560	12502023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12508039_12509586_12514498
ENSMUSG00000070822.6_1	chr7	-	3624	6	FSM	ENSMUSG00000070822.6	ENSMUST00000046245.6	3626	6	1	1	1	-1	multi-exon	FALSE	canonical	3	19	junction_4	12.3838604643302	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGCCTCATTGTTTT	NA	False	NA	-2	True	AATAAA	-19	NA	12509584	12502019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12508039
ENSMUSG00000070822.6_11	chr7	-	5158	6	NIC	ENSMUSG00000070822.6	novel	3709	7	NA	NA	38	-1	intron_retention	FALSE	canonical	3	10	junction_4	13.8130373198656	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGCCTCATTGTTTT	NA	False	NA	-2	True	AATAAA	-19	NA	12514543	12502019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12507518_12507876_12509586_12514498
ENSMUSG00000070822.6_14	chr7	-	2102	6	NIC	ENSMUSG00000070822.6	novel	3626	6	NA	NA	363	-5	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	14.3749782608531	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATATTATGCCTCATTG	NA	False	NA	-6	True	AATAAA	-15	NA	12507903	12502023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12507876
ENSMUSG00000070822.6_17	chr7	-	4636	6	NIC	ENSMUSG00000070822.6	novel	3709	7	NA	NA	5	-1	intron_retention	FALSE	canonical	3	10	junction_4	14.5794375748861	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGCCTCATTGTTTT	NA	False	NA	-2	True	AATAAA	-19	NA	12514576	12502019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_12503673_12504730_12505670_12505935_12506043_12507367_12507518_12507876_12509586_12514498
ENSMUSG00000070822.6_21	chr7	-	1694	2	FSM	ENSMUSG00000070822.6	ENSMUST00000211665.2	1969	2	268	7	268	-5	multi-exon	FALSE	canonical	3	52	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATATTATGCCTCATTG	NA	False	NA	-6	True	AATAAA	-15	NA	12504775	12502023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_12503673_12504730
ENSMUSG00000070822.6_3	chr7	-	3830	7	NIC	ENSMUSG00000070822.6	novel	3709	7	NA	NA	39	-3	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	13.5082279453014	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATATTATGCCTCATTGTT	NA	False	NA	-4	True	AATAAA	-17	NA	12514542	12502021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12507876_12509586_12514498
ENSMUSG00000070822.6_4	chr7	-	4868	5	NIC	ENSMUSG00000070822.6	novel	3709	7	NA	NA	39	-1	intron_retention	FALSE	canonical	3	10	junction_3	16.224980739588	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGCCTCATTGTTTT	NA	False	NA	-2	True	AATAAA	-19	NA	12514542	12502019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_12503673_12504730_12506043_12507367_12507518_12507876_12509586_12514498
ENSMUSG00000070822.6_5	chr7	-	6283	4	NIC	ENSMUSG00000070822.6	novel	3709	7	NA	NA	42	-1	intron_retention	FALSE	canonical	3	26	junction_2	10.6562449087639	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGCCTCATTGTTTT	NA	False	NA	-2	True	AATAAA	-19	NA	12514539	12502019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_12503673_12504730_12505670_12505935_12509586_12514498
ENSMUSG00000070822.6_6	chr7	-	5538	5	NIC	ENSMUSG00000070822.6	novel	3709	7	NA	NA	16	-2	intron_retention	FALSE	canonical	3	26	junction_3	9.3407708461347	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTATGCCTCATTGTTT	NA	False	NA	-3	True	AATAAA	-18	NA	12514565	12502020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12509586_12514498
ENSMUSG00000070822.6_9	chr7	-	1316	1	ISM	ENSMUSG00000070822.6	ENSMUST00000211665.2	1969	2	1708	3	1708	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTATGCCTCATTGTTTT	NA	False	NA	-2	True	AATAAA	-19	NA	12503335	12502019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_12502000_12503300
ENSMUSG00000070828.11_0	chr7	+	1953	5	NIC	ENSMUSG00000070828.11	novel	1829	4	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	11.27774356864	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTATGTTTTGTTTTGT	NA	False	NA	NA	False	AGTAAA	-43	NA	11131843	11136241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_11131924_11132016_11132147_11132578_11133051_11134886_11135047_11135130
ENSMUSG00000070828.11_1	chr7	+	1828	4	FSM	ENSMUSG00000070828.11	ENSMUST00000145237.8	1829	4	2	-1	2	1	multi-exon	FALSE	canonical	3	19	junction_1	4.49691252107735	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTTTGTTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	11131843	11136246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_11131924_11132578_11133051_11134886_11135047_11135130
ENSMUSG00000070828.11_5	chr7	+	2051	4	NIC	ENSMUSG00000070828.11	novel	1829	4	NA	NA	2	1	intron_retention	FALSE	canonical	3	7	junction_1	10.1434160364686	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTTTGTTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	11131843	11136246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_11132147_11132578_11133051_11134886_11135047_11135130
ENSMUSG00000070828.11_6	chr7	+	2483	3	NIC	ENSMUSG00000070828.11	novel	1829	4	NA	NA	2	1	intron_retention	FALSE	canonical	3	28	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTTTGTTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	11131843	11136246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_11133051_11134886_11135047_11135130
ENSMUSG00000070837.6_2	chr7	+	1319	7	FSM	ENSMUSG00000070837.7	ENSMUST00000207711.2	1320	7	-11	12	-11	-9	multi-exon	FALSE	canonical	2	56	junction_6	160.229696234985	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGCATCAATATTCTTG	2903	False	NA	8	True	ATTAAA	-9	NA	6998490	7006078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6998834_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ENSMUSG00000070837.6_4	chr7	+	1196	7	FSM	ENSMUSG00000070837.7	ENSMUST00000208049.2	1401	7	197	8	-6	-5	multi-exon	FALSE	canonical	2	56	junction_6	128.262751152988	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATCAATATTCTTGCTTG	2908	False	NA	12	True	ATTAAA	-13	NA	6998495	7006082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ENSMUSG00000070837.6_8	chr7	+	1741	6	NIC	ENSMUSG00000070837.7	novel	1320	7	NA	NA	0	-9	intron_retention	FALSE	canonical	2	56	junction_5	137.89706305792	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGCATCAATATTCTTG	2914	False	NA	8	True	ATTAAA	-9	NA	6998501	7006078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ENSMUSG00000070858.13_1	chr5	+	388	4	FSM	ENSMUSG00000070858.13	ENSMUST00000094869.12	477	4	84	5	7	-1	multi-exon	FALSE	canonical	3	9	junction_1	12.3648246606609	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTGTGTCCTGTATTTT	NA	False	NA	4	True	AATAAA	-12	NA	34140860	34142352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34140909_34141100_34141241_34141395_34141485_34142241
ENSMUSG00000070858.13_3	chr5	+	490	4	FSM	ENSMUSG00000070858.13	ENSMUST00000114382.2	451	4	-48	9	16	-9	multi-exon	FALSE	canonical	0	0	junction_1	16.5797734872612	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTAGCATGCCTGTGTCC	NA	False	NA	-4	True	AATAAA	-4	NA	34140829	34142344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34140988_34141100_34141241_34141395_34141485_34142241
ENSMUSG00000070858.13_4	chr5	+	489	4	FSM	ENSMUSG00000070858.13	ENSMUST00000114383.8	511	4	21	1	-19	-1	multi-exon	FALSE	canonical	3	25	junction_1	4.98887651569859	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTGTGTCCTGTATTTT	NA	False	NA	4	True	AATAAA	-12	NA	34140834	34142352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_34140984_34141100_34141241_34141395_34141485_34142241
ENSMUSG00000070870.7_1	chr1	-	712	3	FSM	ENSMUSG00000070870.7	ENSMUST00000087359.6	631	3	-90	9	-90	-6	multi-exon	FALSE	canonical	3	12	junction_1	7	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAATAACAGAGTTCTCT	NA	False	NA	NA	False	AATAAA	-19	NA	65090398	65087721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_65088056_65089928_65090172_65090263
ENSMUSG00000070871.11_0	chr1	+	3339	10	FSM	ENSMUSG00000070871.11	ENSMUST00000094898.5	2923	10	-420	4	103	-4	multi-exon	FALSE	canonical	3	63	junction_5	18.3632752128592	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAAATATGGCGAGTGT	NA	False	NA	NA	False	AATAAA	-10	NA	64730083	64764795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_64730560_64740127_64740203_64741504_64741540_64747536_64747638_64750576_64750613_64752269_64752322_64753727_64753848_64757289_64757457_64760785_64760949_64762681
ENSMUSG00000070871.11_17	chr1	+	1618	1	ISM	ENSMUSG00000070871.11	ENSMUST00000114077.8	3281	11	33564	8	32674	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAAATATGGCGAGTGT	NA	False	NA	NA	False	AATAAA	-10	NA	64763177	64764795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_64763200_64764800
ENSMUSG00000070871.11_5	chr1	+	3235	9	NIC	ENSMUSG00000070871.11	novel	2923	10	NA	NA	110	0	intron_retention	FALSE	canonical	3	8	junction_3	34.7589916424513	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATGGCGAGTGTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	64730090	64764799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_64730560_64740127_64740203_64741504_64741540_64750576_64750613_64752269_64752322_64753727_64753848_64757289_64757457_64760785_64760949_64762681
ENSMUSG00000070880.11_0	chr2	+	3217	17	FSM	ENSMUSG00000070880.11	ENSMUST00000094934.11	3355	17	125	13	4	-11	multi-exon	FALSE	canonical	0	0	junction_11	3.61420807370024	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTCCATGAAGAATTTG	NA	False	NA	-7	True	AATAAA	-9	NA	70392510	70432345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_70392677_70394111_70394255_70397529_70397593_70403049_70403209_70404412_70404656_70409454_70409546_70416177_70416291_70417466_70417583_70417666_70417747_70417977_70418033_70420116_70420234_70421449_70421515_70423775_70423855_70424967_70425118_70427505_70427614_70429952_70430043_70430966
ENSMUSG00000070880.11_3	chr2	+	1524	7	ISM	ENSMUSG00000070880.11	ENSMUST00000130604.8	1197	9	145	2038	-9	-23	5prime_fragment	FALSE	canonical	1	2	junction_6	3.80423740350444	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	70392530	70415442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_70392677_70394111_70394255_70397529_70397593_70403049_70403209_70404412_70404656_70409454_70409546_70414763
ENSMUSG00000070883.4_2	chr2	-	1842	9	FSM	ENSMUSG00000070883.4	ENSMUST00000094942.4	1844	9	-2	4	-2	-4	multi-exon	TRUE	canonical	2	3	junction_5	1.58113883008419	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCCTGGTTTGATTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	69619921	69588380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_69588810_69592065_69592231_69602275_69602469_69606473_69606614_69608403_69608561_69611982_69612177_69612288_69612463_69617503_69617731_69619758
ENSMUSG00000070890.4_0	chr4	+	3692	4	NNC	ENSMUSG00000070890.4	novel	1452	3	NA	NA	-1944	2141	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_3	2.94392028877595	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAATATAAATAATA	NA	False	NA	NA	False	NA	NA	NA	101795659	101802521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_101795732_101797576_101797891_101798317_101798903_101799800
ENSMUSG00000070923.5_0	chr4	-	4171	1	FSM	ENSMUSG00000070923.5	ENSMUST00000094993.3	4174	1	0	3	0	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	362	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTCTTGTATTGCTTT	NA	False	NA	-4	True	NA	NA	NA	88640702	88636531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_88636500_88640700
ENSMUSG00000070934.7_0	chr4	+	1577	1	FSM	ENSMUSG00000070934.7	ENSMUST00000091064.8	1618	1	36	5	36	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	531	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATGTTGTTTGAAATAA	NA	False	NA	14	True	AATAAA	-14	NA	86493940	86495517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_86493900_86495500
ENSMUSG00000070939.10_0	chr1	-	5079	12	FSM	ENSMUSG00000070939.10	ENSMUST00000186694.7	5385	12	257	49	-9	-49	multi-exon	FALSE	canonical	3	38	junction_11	7.4512187699077	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTTTCTTGGGTCATT	NA	False	NA	-8	True	ATTAAA	-16	NA	43131632	43086428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_43088996_43090717_43091152_43092570_43092731_43093678_43093826_43095771_43095916_43098257_43098316_43099039_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43114410_43115113_43131540
ENSMUSG00000070939.10_17	chr1	-	3069	12	ISM	ENSMUSG00000070939.10	ENSMUST00000095014.8	5607	13	-25	4285	-10	3223	5prime_fragment	FALSE	canonical	3	11	junction_10	16.1260530439677	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCCAGTTTTTATTT	7758	False	NA	NA	False	TTTAAA	-14	NA	43137807	43090644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_43091152_43092570_43092731_43093678_43093826_43095771_43095916_43098257_43098316_43099039_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43114410_43115113_43136011_43136210_43137429
ENSMUSG00000070939.10_18	chr1	-	2566	11	ISM	ENSMUSG00000070939.10	ENSMUST00000186694.7	5385	12	272	4269	6	3219	5prime_fragment	FALSE	canonical	3	38	junction_10	7.81280999384984	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTCTTGGCCAGTTTTT	NA	False	NA	NA	False	TTTAAA	-10	NA	43131617	43090648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_43091152_43092570_43092731_43093678_43093826_43095771_43095916_43098257_43098316_43099039_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43114410_43115113_43131540
ENSMUSG00000070939.10_2	chr1	-	2793	2	ISM	ENSMUSG00000070939.10	ENSMUST00000186694.7	5385	12	40945	50	9149	-50	3prime_fragment	FALSE	canonical	3	49	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCCTTTTCTTGGGTCAT	7711	False	NA	-9	True	ATTAAA	-15	NA	43090944	43086429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_43088996_43090717
ENSMUSG00000070939.10_21	chr1	-	1226	2	FSM	ENSMUSG00000070939.10	ENSMUST00000187525.2	1795	2	10	559	-6	-318	multi-exon	FALSE	canonical	3	38	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTAGGGCTCATTCTTGG	NA	False	NA	NA	False	NA	NA	NA	43131613	43113959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_43115113_43131540
ENSMUSG00000070939.10_5	chr1	-	2109	1	ISM	ENSMUSG00000070939.10	ENSMUST00000095014.8	5607	13	49244	70	11555	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCCTTTTCTTGGGTCAT	3930	False	NA	-9	True	ATTAAA	-15	NA	43088538	43086429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_43086400_43088500
ENSMUSG00000070939.10_6	chr1	-	5571	13	FSM	ENSMUSG00000070939.10	ENSMUST00000095014.8	5607	13	-35	71	-20	-51	multi-exon	FALSE	canonical	3	11	junction_11	15.5393765068687	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTTTCTTGGGTCA	7748	False	NA	-10	True	ATTAAA	-14	NA	43137817	43086430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_43088996_43090717_43091152_43092570_43092731_43093678_43093826_43095771_43095916_43098257_43098316_43099039_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43114410_43115113_43136011_43136210_43137429
ENSMUSG00000070953.14_13	chr2	-	1466	8	NIC	ENSMUSG00000070953.14	novel	1431	8	NA	NA	-12	-1	combination_of_known_junctions	FALSE	canonical	3	26	junction_6	164.821486611969	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGTGACTTTTTACAAAA	2809	False	NA	-23	True	AATAAA	-16	NA	34689752	34669229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687382_34687446_34689434
ENSMUSG00000070953.14_15	chr2	-	1174	8	NIC	ENSMUSG00000070953.14	novel	2968	8	NA	NA	-22	-1	combination_of_known_junctions	FALSE	canonical	3	26	junction_6	140.541227882404	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGTGACTTTTTACAAAA	2773	False	NA	-23	True	AATAAA	-16	NA	34689788	34669229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687382_34687446_34689762
ENSMUSG00000070953.14_2	chr2	-	1169	8	FSM	ENSMUSG00000070953.14	ENSMUST00000145903.8	2968	8	136	1663	-22	-2	multi-exon	FALSE	canonical	3	258	junction_7	62.9123134503371	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGTGACTTTTTACAAA	2773	False	NA	-24	True	AATAAA	-15	NA	34689788	34669230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689762
ENSMUSG00000070953.14_3	chr2	-	1164	8	NIC	ENSMUSG00000070953.14	novel	2968	8	NA	NA	-22	-4	combination_of_known_junctions	FALSE	canonical	3	56	junction_4	131.97928099609	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTTGTGACTTTTTACA	2773	False	NA	-26	True	AATAAA	-13	NA	34689788	34669232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675738_34680514_34680668_34685183_34685342_34687386_34687446_34689762
ENSMUSG00000070953.14_4	chr2	-	1462	8	FSM	ENSMUSG00000070953.14	ENSMUST00000118108.2	1431	8	-12	-19	-12	-1	multi-exon	FALSE	canonical	3	85	junction_7	117.809081109381	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGTGACTTTTTACAAAA	2809	False	NA	-23	True	AATAAA	-16	NA	34689752	34669229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
ENSMUSG00000070953.14_7	chr2	-	1147	7	ISM	ENSMUSG00000070953.14	ENSMUST00000118108.2	1431	8	2292	-19	-2131	-1	3prime_fragment	FALSE	canonical	3	358	junction_4	38.762811502206	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGTGACTTTTTACAAAA	5113	False	NA	-23	True	AATAAA	-16	NA	34687448	34669229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386
ENSMUSG00000070960.5_0	chr1	+	1533	1	FSM	ENSMUSG00000070960.5	ENSMUST00000095050.5	1513	1	155	-175	155	175	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACATTGAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-7	NA	31654384	31655917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_31654400_31655900
ENSMUSG00000070972.14_0	chr4	+	1679	5	FSM	ENSMUSG00000070972.14	ENSMUST00000153467.3	2393	5	-42	756	-21	301	multi-exon	FALSE	canonical	2	4	junction_1	45.2189119727576	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTCTGTGTGAAGTGT	-18	True	NA	5	True	NA	NA	NA	59003150	59022984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_59003558_59013631_59013856_59017669_59017823_59020058_59020530_59022560
ENSMUSG00000070972.14_1	chr4	+	1450	4	FSM	ENSMUSG00000070972.14	ENSMUST00000095070.4	4023	4	-16	2589	-16	301	multi-exon	FALSE	canonical	3	77	junction_1	16.2685791225499	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTCTGTGTGAAGTGT	-13	True	NA	5	True	NA	NA	NA	59003155	59022984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_59003558_59017669_59017823_59020058_59020530_59022560
ENSMUSG00000070972.14_3	chr4	+	557	2	ISM	ENSMUSG00000070972.14	ENSMUST00000153467.3	2393	5	17212	748	17212	309	3prime_fragment	FALSE	canonical	3	112	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGAAGTGTTTCTTCTT	2715	False	NA	13	True	TTTAAA	-6	NA	59020404	59022992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_59020530_59022560
ENSMUSG00000070990.3_0	chr4	+	2121	1	FSM	ENSMUSG00000070990.3	ENSMUST00000095097.3	2804	1	42	641	42	-641	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAGAACAAGTTTGCAA	4	True	NA	NA	False	AATAAA	-27	NA	46343650	46345771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_46343600_46345800
ENSMUSG00000071014.11_1	chr4	-	549	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	38	72	26	2	multi-exon	FALSE	canonical	3	2502	junction_3	28.8251433455046	489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTGTCCGTGTTACTGT	28	False	NA	-9	True	AATAAA	-19	NA	40279383	40270662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
ENSMUSG00000071037.7_0	chr17	+	4451	4	NNC	ENSMUSG00000071037.7	novel	741	4	NA	NA	63	-36025	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_3	37.6769897358528	40	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAAGTGTCAGTCCATC	2290	False	NA	-4	True	AATAAA	-32	NA	85398096	85437911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_85398292_85403917_85404091_85421210_85421276_85433893
ENSMUSG00000071037.7_3	chr17	+	1489	11	NNC	ENSMUSG00000071037.7	novel	1595	11	NA	NA	50	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	26.896096371035	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATTAATTGTTTCAATCT	2277	False	NA	7	True	AATAAA	-23	NA	85398083	85766013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_85398292_85403917_85404091_85421210_85421277_85699000_85699062_85700885_85700941_85702029_85702094_85709853_85709921_85738898_85738974_85746954_85747019_85759623_85759756_85765489
ENSMUSG00000071041.5_0	chr8	+	1655	1	FSM	ENSMUSG00000071041.5	ENSMUST00000120826.2	1545	1	-65	-45	-65	45	mono-exon	FALSE	NA	NA	NA	NA	NA	505	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAATAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-9	NA	100757124	100758779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_100757100_100758800
ENSMUSG00000071054.13_1	chr17	+	3163	21	FSM	ENSMUSG00000071054.13	ENSMUST00000095224.11	3106	21	-58	1	19	-1	multi-exon	FALSE	canonical	3	422	junction_6	66.4862955803675	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCAGACTTTCAACCTCT	8004	False	NA	34	True	AATAAA	-25	NA	56892000	56913293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
ENSMUSG00000071054.13_2	chr17	+	3040	22	NIC	ENSMUSG00000071054.13	novel	3106	21	NA	NA	-1	-1	combination_of_known_junctions	TRUE	canonical	3	80	junction_1	120.113627231518	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCAGACTTTCAACCTCT	7984	False	NA	34	True	AATAAA	-25	NA	56891980	56913293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_56892044_56892186_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
ENSMUSG00000071054.13_6	chr17	+	3168	21	FSM	ENSMUSG00000071054.13	ENSMUST00000182533.8	3122	21	28	-74	20	-1	multi-exon	FALSE	canonical	3	97	junction_18	119.307543768196	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCAGACTTTCAACCTCT	8005	False	NA	34	True	AATAAA	-25	NA	56892001	56913293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912550_56912658_56912796_56912864_56912975
ENSMUSG00000071054.13_83	chr17	+	2179	15	ISM	ENSMUSG00000071054.13	ENSMUST00000095224.11	3106	21	13771	1	1060	-1	3prime_fragment	FALSE	canonical	3	457	junction_1	58.801681566959	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCAGACTTTCAACCTCT	NA	False	NA	34	True	AATAAA	-25	NA	56905829	56913293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
ENSMUSG00000071064.16_6	chr8	+	3929	4	ISM	ENSMUSG00000071064.16	ENSMUST00000148713.8	5230	10	67268	577	6620	-3	3prime_fragment	FALSE	canonical	2	4	junction_2	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGAAAACGTGTGTTTG	NA	False	NA	NA	False	TATAAA	-11	NA	79912223	79919818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_79912419_79912804_79912983_79914777_79914811_79916295
ENSMUSG00000071064.16_7	chr8	+	2546	1	ISM	ENSMUSG00000071064.16	ENSMUST00000098614.9	7581	15	162211	550	11673	1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACGTGTGTTTGCAGT	NA	False	NA	NA	False	TATAAA	-15	NA	79917276	79919822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_79917300_79919800
ENSMUSG00000071064.16_8	chr8	+	7424	15	FSM	ENSMUSG00000071064.16	ENSMUST00000098614.9	7581	15	-339	496	-339	55	multi-exon	TRUE	canonical	2	3	junction_2	2.87494454249973	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAAAAGAAAATCT	4707	False	NA	NA	False	NA	NA	NA	79754726	79919876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_79755359_79786878_79787920_79796999_79797173_79802686_79803168_79818461_79818696_79844803_79845044_79847111_79847170_79863188_79863293_79902461_79902600_79905536_79905709_79906673_79906841_79912226_79912419_79912804_79912983_79914777_79914811_79916295
ENSMUSG00000071068.8_1	chr17	+	2805	5	FSM	ENSMUSG00000071068.8	ENSMUST00000233092.2	2094	5	430	-1141	15	1141	multi-exon	FALSE	canonical	1	2	junction_2	1.6583123951777	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGTGTCTTGTGCTTCCC	1998	False	NA	2	True	NA	NA	NA	48607397	48618190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_48607625_48609639_48609961_48614907_48615302_48616146_48616254_48616434
ENSMUSG00000071068.8_2	chr17	+	1441	1	ISM	ENSMUSG00000071068.8	ENSMUST00000170941.3	3983	5	9332	1375	9332	1137	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGAAAGTGTCTTGTGCT	NA	False	NA	-2	True	NA	NA	NA	48616745	48618186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_48616700_48618200
ENSMUSG00000071072.13_0	chr10	+	1670	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	51	279	-6	15	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	3929	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTCCTTTTAAGTG	897	False	NA	14	True	AATAAA	-15	NA	127894873	127912862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
ENSMUSG00000071074.10_1	chr17	+	1476	9	FSM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	32	527	-13	-7	multi-exon	FALSE	canonical	3	158	junction_8	7.84219357067906	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTAGACCTGTAGCTCC	2612	False	NA	16	True	ATTAAA	-11	NA	46559037	46562936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562154_46562289_46562414_46562491
ENSMUSG00000071074.10_16	chr17	+	319	1	ISM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	3617	522	356	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACCTGTAGCTCCTGTTG	6197	False	NA	21	True	ATTAAA	-16	NA	46562622	46562941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46562600_46562900
ENSMUSG00000071074.10_22	chr17	+	1255	8	ISM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	765	527	-184	-7	3prime_fragment	FALSE	canonical	3	158	junction_7	8.13658906622751	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTAGACCTGTAGCTCC	3345	False	NA	16	True	ATTAAA	-11	NA	46559770	46562936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562154_46562289_46562414_46562491
ENSMUSG00000071074.10_3	chr17	+	1627	8	FSM	ENSMUSG00000071074.10	ENSMUST00000151488.2	1570	8	-42	-15	-22	-1	multi-exon	FALSE	canonical	3	158	junction_7	7.73542078324622	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGTAGCTCCTGTTGG	2603	False	NA	22	True	ATTAAA	-17	NA	46559028	46562942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562414_46562491
ENSMUSG00000071076.9_0	chr8	+	1676	1	FSM	ENSMUSG00000071076.9	ENSMUST00000095267.8	1667	1	-10	1	-10	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1841	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGCTGTCCGCCTCCT	NA	False	NA	33	True	AGTAAA	-15	NA	71151588	71153264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71151600_71153300
ENSMUSG00000071078.7_0	chr8	+	1153	5	FSM	ENSMUSG00000071078.7	ENSMUST00000095273.7	1161	5	8	0	8	0	multi-exon	FALSE	canonical	0	0	junction_4	248.840310239318	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACCAAACACCCCA	469	False	NA	9	True	NA	NA	NA	70584004	70586389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70584250_70584567_70584659_70585061_70585168_70585236_70585305_70585746
ENSMUSG00000071078.7_1	chr8	+	2067	2	ISM	ENSMUSG00000071078.7	ENSMUST00000095273.7	1161	5	8	0	8	0	intron_retention	FALSE	canonical	3	606	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACCAAACACCCCA	469	False	NA	9	True	NA	NA	NA	70584004	70586389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70584250_70584567
ENSMUSG00000071078.7_2	chr8	+	1047	4	FSM	ENSMUSG00000071078.7	ENSMUST00000211898.2	1078	4	22	9	8	0	multi-exon	FALSE	canonical	0	0	junction_3	271.261661295674	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACCAAACACCCCA	469	False	NA	9	True	NA	NA	NA	70584004	70586389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70584250_70584567_70584659_70585236_70585305_70585746
ENSMUSG00000071078.7_3	chr8	+	1152	5	NNC	ENSMUSG00000071078.7	novel	1161	5	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	248.840310239318	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACCAAACACCCCA	468	False	NA	9	True	NA	NA	NA	70584003	70586389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_70584250_70584567_70584659_70585061_70585168_70585236_70585305_70585748
ENSMUSG00000071113.5_5	chr8	+	936	1	ISM	ENSMUSG00000071113.5	ENSMUST00000095345.5	1836	3	9213	4	9213	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTTCTGTGGCCGTGG	NA	False	NA	NA	False	NA	NA	NA	34591396	34592332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_34591400_34592300
ENSMUSG00000071141.8_0	chr6	+	445	1	FSM	ENSMUSG00000071141.8	ENSMUST00000120093.2	321	1	-49	-75	-49	75	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCCAAGGTGCATCCCT	2074	False	NA	NA	False	AATAAA	-14	NA	136465755	136466200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_136465800_136466200
ENSMUSG00000071172.14_0	chr17	+	1438	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	46	1134	1	-4	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	1539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTGTAGTAGTCAGTCG	NA	False	NA	11	True	AATAAA	-11	NA	29251647	29261213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ENSMUSG00000071172.14_18	chr17	+	1284	5	ISM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	3677	1111	-74	19	3prime_fragment	FALSE	canonical	3	1763	junction_2	148.476429105767	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCACTGTTGCCATTGTT	NA	False	NA	34	True	AATAAA	-34	NA	29255278	29261236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ENSMUSG00000071172.14_2	chr17	+	1889	7	FSM	ENSMUSG00000071172.14	ENSMUST00000037776.16	2594	7	42	663	1	-9	multi-exon	FALSE	canonical	3	61	junction_4	890.897051042125	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATAATTGTGTAGTAGTC	NA	False	NA	6	True	AATAAA	-6	NA	29251647	29261208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29258884_29259748_29259788_29260180_29260268_29260357
ENSMUSG00000071172.14_27	chr17	+	445	1	ISM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	9175	1126	2109	4	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTCAGTCGAGCGAACC	NA	False	NA	19	True	AATAAA	-19	NA	29260776	29261221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29260800_29261200
ENSMUSG00000071172.14_6	chr17	+	3451	5	NIC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	1	-8	intron_retention	FALSE	canonical	3	1420	junction_1	282.90225785596	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAACTTGAAAGCCTGTT	NA	False	NA	29	True	ATTAAA	-20	NA	29251647	29261076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_29251761_29255214_29255423_29257463_29259788_29260180_29260268_29260357
ENSMUSG00000071176.11_19	chr8	+	1050	1	ISM	ENSMUSG00000071176.11	ENSMUST00000084207.12	5528	29	88364	9	3891	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACAGTATTTCAAGTTGC	NA	False	NA	NA	False	AATAAA	-17	NA	15050026	15051076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_15050000_15051100
ENSMUSG00000071176.11_5	chr8	+	5353	28	FSM	ENSMUSG00000071176.11	ENSMUST00000110800.9	5336	28	-28	11	-7	0	multi-exon	FALSE	canonical	3	16	junction_8	7.20558387346064	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATACAGTATTTCAAGTT	NA	False	NA	NA	False	AATAAA	-15	NA	14961709	15051074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_14961764_14975049_14975221_14978771_14978937_14979963_14980246_14982356_14982421_14984769_14984847_14986740_14986798_14990208_14990373_14995279_14995395_14997156_14997264_15004434_15004513_15004748_15004929_15006862_15006980_15008563_15008657_15011114_15011286_15012517_15012664_15014086_15014263_15024975_15025092_15025569_15025698_15025887_15025989_15027547_15027670_15028436_15028524_15029799_15030027_15030551_15030710_15033769_15033913_15041059_15041235_15047541_15047665_15049318
ENSMUSG00000071176.11_6	chr8	+	5476	29	FSM	ENSMUSG00000071176.11	ENSMUST00000084207.12	5528	29	41	11	-13	0	multi-exon	TRUE	canonical	3	14	junction_9	8.00541908296359	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATACAGTATTTCAAGTT	NA	False	NA	NA	False	AATAAA	-15	NA	14961703	15051074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_14961764_14975049_14975221_14978771_14978937_14979963_14980246_14982356_14982421_14984769_14984847_14986740_14986798_14990208_14990373_14992609_14992727_14995279_14995395_14997156_14997264_15004434_15004513_15004748_15004929_15006862_15006980_15008563_15008657_15011114_15011286_15012517_15012664_15014086_15014263_15024975_15025092_15025569_15025698_15025887_15025989_15027547_15027670_15028436_15028524_15029799_15030027_15030551_15030710_15033769_15033913_15041059_15041235_15047541_15047665_15049318
ENSMUSG00000071176.11_8	chr8	+	4714	28	NIC	ENSMUSG00000071176.11	novel	5336	28	NA	NA	-8	-637	intron_retention	FALSE	canonical	1	2	junction_5	9.46337971105226	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATTTTAGTCAATGTAC	NA	False	NA	NA	False	ATTAAA	-11	NA	14961708	15050437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_14961764_14975049_14975221_14978771_14978937_14979963_14980246_14982356_14982421_14984772_14984847_14986740_14986798_14990208_14990373_14995279_14995395_14997156_14997264_15004434_15004513_15004748_15004929_15006862_15006980_15008563_15008657_15011114_15011286_15012517_15012664_15014086_15014263_15024975_15025092_15025569_15025698_15025887_15025989_15027547_15027670_15028436_15028524_15029799_15030027_15030551_15030710_15033769_15033913_15041059_15041235_15047541_15047665_15049318
ENSMUSG00000071178.12_0	chr12	-	1511	5	FSM	ENSMUSG00000071178.12	ENSMUST00000186166.7	1762	5	249	2	249	0	multi-exon	FALSE	canonical	0	0	junction_2	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCCTTGACTCTGTGGGT	7618	False	NA	NA	False	ATTAAA	-36	NA	103706525	103694416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_103694693_103695489_103695641_103696508_103696780_103698219_103698852_103706344
ENSMUSG00000071180.6_0	chr13	+	1908	3	FSM	ENSMUSG00000071180.6	ENSMUST00000095458.6	1918	3	5	5	1	-5	multi-exon	FALSE	canonical	3	97	junction_1	47	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGAGGTCCTGAGTTTT	NA	False	NA	NA	False	AATAAA	-39	NA	108180984	108185701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_108181021_108182958_108183103_108183973
ENSMUSG00000071180.6_1	chr13	+	2091	3	FSM	ENSMUSG00000071180.6	ENSMUST00000225972.2	2097	3	1	5	1	-5	multi-exon	FALSE	canonical	3	27	junction_1	82	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGAGGTCCTGAGTTTT	NA	False	NA	NA	False	AATAAA	-39	NA	108181023	108185701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_108181243_108182958_108183103_108183973
ENSMUSG00000071180.6_2	chr13	+	1873	2	FSM	ENSMUSG00000071180.6	ENSMUST00000224361.2	830	2	13	-1056	13	-5	multi-exon	FALSE	canonical	3	191	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGAGGTCCTGAGTTTT	NA	False	NA	NA	False	AATAAA	-39	NA	108182957	108185701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_108183103_108183973
ENSMUSG00000071180.6_3	chr13	+	2018	3	FSM	ENSMUSG00000071180.6	ENSMUST00000226042.2	1092	3	4	-930	1	-3	multi-exon	FALSE	canonical	3	16	junction_1	87.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGGTCCTGAGTTTTTG	NA	False	NA	NA	False	AATAAA	-41	NA	108181023	108185703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_108181168_108182958_108183103_108183973
ENSMUSG00000071180.6_6	chr13	+	854	1	ISM	ENSMUSG00000071180.6	ENSMUST00000095458.6	1918	3	3868	5	1856	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGAGGTCCTGAGTTTT	NA	False	NA	NA	False	AATAAA	-39	NA	108184847	108185701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_108184800_108185700
ENSMUSG00000071226.12_0	chr6	+	5863	19	FSM	ENSMUSG00000071226.12	ENSMUST00000112686.8	9212	19	-43	3392	9	894	multi-exon	TRUE	canonical	3	53	junction_14	26.8930781860498	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAGTCTTTGTAAAG	NA	False	NA	1	True	AATAAA	-19	NA	120643338	120744759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120720743_120720828_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733815_120734526_120734653_120734775_120735593_120738101_120739519_120742232_120742345_120743372
ENSMUSG00000071226.12_1	chr6	+	5783	18	NIC	ENSMUSG00000071226.12	novel	9212	19	NA	NA	11	900	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	31.1467116572332	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCTTTGTAAAGGAATAT	NA	False	NA	7	True	AATAAA	-25	NA	120643340	120744765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733815_120734526_120734653_120734775_120735593_120738101_120739519_120742232_120742345_120743372
ENSMUSG00000071226.12_10	chr6	+	5850	19	NIC	ENSMUSG00000071226.12	novel	9212	19	NA	NA	12	887	combination_of_known_junctions	FALSE	canonical	3	53	junction_14	28.4433593543032	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGAGTTTCAAGTCTT	NA	False	NA	-6	True	AATAAA	-12	NA	120643341	120744752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120720743_120720828_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733815_120734526_120734653_120734775_120735593_120738104_120739519_120742232_120742345_120743372
ENSMUSG00000071226.12_11	chr6	+	5774	18	NIC	ENSMUSG00000071226.12	novel	9212	19	NA	NA	11	894	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	32.559447892414	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAGTCTTTGTAAAG	NA	False	NA	1	True	AATAAA	-19	NA	120643340	120744759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733815_120734526_120734653_120734775_120735593_120738104_120739519_120742232_120742345_120743372
ENSMUSG00000071226.12_2	chr6	+	5857	18	NIC	ENSMUSG00000071226.12	novel	4849	19	NA	NA	12	894	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	30.8887948463326	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAGTCTTTGTAAAG	NA	False	NA	1	True	AATAAA	-19	NA	120643341	120744759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733899_120734526_120734653_120734775_120735593_120738104_120739519_120742232_120742345_120743372
ENSMUSG00000071226.12_3	chr6	+	5938	19	FSM	ENSMUSG00000071226.12	ENSMUST00000100993.9	4849	19	-206	-883	7	883	multi-exon	FALSE	canonical	3	70	junction_14	24.9109525220445	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACCCTGGAGTTTCAAG	NA	False	NA	-10	True	AATAAA	-8	NA	120643336	120744748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120720743_120720828_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733899_120734526_120734653_120734775_120735593_120738101_120739519_120742232_120742345_120743372
ENSMUSG00000071226.12_4	chr6	+	5941	19	NIC	ENSMUSG00000071226.12	novel	4849	19	NA	NA	12	894	combination_of_known_junctions	FALSE	canonical	3	61	junction_16	26.6106471775843	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAGTCTTTGTAAAG	NA	False	NA	1	True	AATAAA	-19	NA	120643341	120744759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120720743_120720828_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733899_120734526_120734653_120734775_120735593_120738104_120739519_120742232_120742345_120743372
ENSMUSG00000071226.12_47	chr6	+	3160	4	NIC	ENSMUSG00000071226.12	novel	9212	19	NA	NA	250	894	combination_of_known_junctions	FALSE	canonical	3	61	junction_1	41.6519974177576	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAGTCTTTGTAAAG	NA	False	NA	1	True	AATAAA	-19	NA	120735345	120744759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120735593_120738104_120739519_120742232_120742345_120743372
ENSMUSG00000071226.12_48	chr6	+	3774	3	ISM	ENSMUSG00000071226.12	ENSMUST00000112686.8	9212	19	95344	1910	3630	-1910	3prime_fragment	FALSE	canonical	3	124	junction_1	19	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGAGCCAGATTGGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	120738725	120746241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_120739519_120742232_120742345_120743372
ENSMUSG00000071226.12_50	chr6	+	3523	1	ISM	ENSMUSG00000071226.12	ENSMUST00000112686.8	9212	19	101241	6	9527	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTAGTAAGGCTTTCGTG	1868	False	NA	-2	True	TATAAA	-11	NA	120744622	120748145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_120744600_120748100
ENSMUSG00000071226.12_6	chr6	+	5850	18	NIC	ENSMUSG00000071226.12	novel	4849	19	NA	NA	11	883	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	29.3618399808122	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACCCTGGAGTTTCAAG	NA	False	NA	-10	True	AATAAA	-8	NA	120643340	120744748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733899_120734526_120734653_120734775_120735593_120738101_120739519_120742232_120742345_120743372
ENSMUSG00000071229.4_0	chr14	+	908	2	FSM	ENSMUSG00000071229.4	ENSMUST00000045976.7	913	2	-5	10	-5	-10	multi-exon	FALSE	canonical	3	25	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAAGGAACCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	122272080	122275822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_122272425_122275258
ENSMUSG00000071230.8_0	chr17	-	621	2	FSM	ENSMUSG00000071230.8	ENSMUST00000095544.6	638	2	17	0	17	0	multi-exon	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCGTGTGACCCTTTTT	8974	False	NA	NA	False	AATAAA	-20	NA	24877414	24876303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24876479_24876968
ENSMUSG00000071235.13_0	chr12	+	2750	2	FSM	ENSMUSG00000071235.13	ENSMUST00000166772.9	3098	2	-61	409	-61	-409	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGTTGTATCTTTTTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	84687731	84697820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84687912_84695250
ENSMUSG00000071235.13_3	chr12	+	2689	1	ISM	ENSMUSG00000071235.13	ENSMUST00000166772.9	3098	2	7743	5	5866	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACAGCCTGTGGCCTCCGG	NA	False	NA	NA	False	AATAAA	-17	NA	84695535	84698224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_84695500_84698200
ENSMUSG00000071252.7_0	chr13	+	632	3	FSM	ENSMUSG00000071252.7	ENSMUST00000225992.2	616	3	-16	0	-5	0	multi-exon	FALSE	canonical	3	44	junction_1	11	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGTGACTTACACTGT	NA	False	NA	NA	False	AATAAA	-17	NA	77283653	77332123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_77283750_77322971_77323104_77331719
ENSMUSG00000071252.7_2	chr13	+	3782	19	ISM	ENSMUSG00000071252.7	ENSMUST00000168779.3	5051	20	14	279418	0	72397	5prime_fragment	FALSE	canonical	1	2	junction_10	16.7199149386459	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTGAGCTCTGGGGC	NA	False	NA	NA	False	AAAACA	-5	NA	77283672	77482485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_77283750_77322971_77323104_77331719_77331889_77340672_77341343_77393319_77393482_77402241_77402337_77407959_77408188_77410007_77410274_77411650_77411802_77415780_77415972_77417880_77418064_77429160_77429272_77446585_77446726_77451414_77451580_77464466_77464692_77471483_77471890_77475985_77476143_77480421_77480578_77482387
ENSMUSG00000071252.7_3	chr13	+	1672	4	FSM	ENSMUSG00000071252.7	ENSMUST00000225605.2	1539	4	10	-143	10	143	multi-exon	FALSE	canonical	3	23	junction_3	17.5562587763516	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGATAATAAACTTTCTTG	NA	False	NA	NA	False	AATAAA	-8	NA	77283682	77341976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_77283750_77322971_77323104_77331719_77331889_77340672
ENSMUSG00000071253.9_0	chr10	+	3106	9	FSM	ENSMUSG00000071253.9	ENSMUST00000044977.10	3145	9	32	7	-2	-7	multi-exon	FALSE	canonical	3	58	junction_3	11.9314447993527	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTTGTTTTGATGGCTTG	NA	False	NA	11	True	ATTAAA	-12	NA	62756443	62782270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_62756661_62764074_62764168_62766081_62766216_62768497_62768562_62773196_62773319_62773706_62773774_62776820_62776984_62778429_62778499_62780093
ENSMUSG00000071253.9_1	chr10	+	3048	8	NIC	ENSMUSG00000071253.9	novel	3145	9	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	28.5328310719352	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGATGGCTTGGTTTTTT	NA	False	NA	18	True	ATTAAA	-19	NA	62756444	62782277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_62756661_62764074_62764168_62766081_62766216_62773196_62773319_62773706_62773774_62776820_62776984_62778429_62778499_62780093
ENSMUSG00000071253.9_5	chr10	+	1971	1	ISM	ENSMUSG00000071253.9	ENSMUST00000044977.10	3145	9	23893	2	2084	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGATGGCTTGGTTTT	NA	False	NA	16	True	ATTAAA	-17	NA	62780304	62782275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_62780300_62782300
ENSMUSG00000071256.5_0	chr17	-	2611	6	FSM	ENSMUSG00000071256.5	ENSMUST00000095606.5	2686	6	73	2	73	-2	multi-exon	FALSE	canonical	3	33	junction_4	6.49923072370877	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTGACTCTTTAGCTG	6757	False	NA	NA	False	AATAAA	-18	NA	23783139	23775742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23777287_23778356_23778523_23778607_23778679_23778958_23779077_23780119_23780635_23782942
ENSMUSG00000071266.14_0	chr17	+	2956	7	NNC	ENSMUSG00000071266.14	novel	2926	7	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	29.6690073982936	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACTTAGACTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22643202	22675661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670075_22670134_22672432_22672560_22673404
ENSMUSG00000071266.14_1	chr17	+	2965	7	FSM	ENSMUSG00000071266.14	ENSMUST00000088763.13	2935	7	-36	6	10	-6	multi-exon	FALSE	canonical	3	18	junction_4	23.5849528301415	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTAGACTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	22643212	22675664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670059_22670134_22672432_22672560_22673404
ENSMUSG00000071266.14_10	chr17	+	873	6	NIC	ENSMUSG00000071266.14	novel	2935	7	NA	NA	8	-1164	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	30.7701153718994	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAACTGTTTAAGTGTGTG	NA	False	NA	NA	False	TATAAA	-7	NA	22643210	22673655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_22643411_22663148_22663273_22665777_22665875_22670059_22670134_22672432_22672560_22673404
ENSMUSG00000071266.14_16	chr17	+	815	6	ISM	ENSMUSG00000071266.14	ENSMUST00000120222.8	2926	7	-37	2993	0	-2142	5prime_fragment	FALSE	canonical	3	27	junction_4	20.1930681175496	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACTTTTTCATTGTGA	NA	False	NA	NA	False	NA	NA	NA	22643202	22672677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670077_22670134_22672432
ENSMUSG00000071266.14_2	chr17	+	2952	7	FSM	ENSMUSG00000071266.14	ENSMUST00000120222.8	2926	7	-36	10	1	-10	multi-exon	FALSE	canonical	3	27	junction_4	20.6881608655772	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAACTTAGACTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	22643203	22675660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670077_22670134_22672432_22672560_22673404
ENSMUSG00000071266.14_20	chr17	+	1376	4	ISM	ENSMUSG00000071266.14	ENSMUST00000088763.13	2935	7	21702	2015	-5153	-1164	3prime_fragment	FALSE	canonical	3	18	junction_1	28.9865869364129	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAACTGTTTAAGTGTGTG	NA	False	NA	NA	False	TATAAA	-7	NA	22664950	22673655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_22665875_22670059_22670134_22672432_22672560_22673404
ENSMUSG00000071266.14_4	chr17	+	3467	6	NIC	ENSMUSG00000071266.14	novel	2935	7	NA	NA	4	-1164	intron_retention	FALSE	canonical	3	18	junction_3	25.3187677425265	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAACTGTTTAAGTGTGTG	NA	False	NA	NA	False	TATAAA	-7	NA	22643206	22673655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_22643411_22647461_22647547_22663148_22665875_22670059_22670134_22672432_22672560_22673404
ENSMUSG00000071267.12_2	chr17	-	3282	6	FSM	ENSMUSG00000071267.12	ENSMUST00000091879.12	3265	6	-22	5	-9	-5	multi-exon	FALSE	canonical	3	43	junction_3	17.9041894538681	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGGACTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22181454	22145945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22173035_22181236
ENSMUSG00000071267.12_22	chr17	-	2449	3	FSM	ENSMUSG00000071267.12	ENSMUST00000126485.2	2481	3	25	7	12	-7	multi-exon	FALSE	canonical	3	50	junction_2	18	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAGTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22181420	22158732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_22160832_22172868_22173035_22181236
ENSMUSG00000071267.12_25	chr17	-	3126	5	NIC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	9	-5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	32.101401838549	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGGACTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22181423	22145945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_22148471_22149346_22149474_22151973_22152095_22172868_22173035_22181236
ENSMUSG00000071267.12_3	chr17	-	4734	3	FSM	ENSMUSG00000071267.12	ENSMUST00000074295.8	1461	3	-2052	-1221	-2052	-5	multi-exon	TRUE	canonical	3	71	junction_1	7.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGGACTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22154055	22145945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_22148471_22149346_22149474_22151973
ENSMUSG00000071267.12_4	chr17	-	3229	6	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-9	-7	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	26.7776025812618	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACAAGTTGGACTTGGTT	NA	False	NA	NA	False	NA	NA	NA	22181454	22145947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_22148471_22149346_22149474_22151973_22152095_22160757_22160832_22172868_22173035_22181236
ENSMUSG00000071267.12_5	chr17	-	3210	6	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-10	-5	at_least_one_novel_splicesite	TRUE	canonical	3	30	junction_5	22.8508205541945	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGTTGGACTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22181455	22145945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22172962_22181236
ENSMUSG00000071267.12_7	chr17	-	1473	1	ISM	ENSMUSG00000071267.12	ENSMUST00000091879.12	3265	6	34013	6	4584	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAAGTTGGACTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	22147419	22145946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_22145900_22147400
ENSMUSG00000071281.13_0	chr13	-	2375	1	ISM	ENSMUSG00000071281.13	ENSMUST00000073157.15	3957	4	21490	0	16589	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTGTTATTTTATTTAT	NA	False	NA	-1	True	NA	NA	NA	67855802	67853427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67853400_67855800
ENSMUSG00000071281.13_1	chr13	-	3965	4	FSM	ENSMUSG00000071281.13	ENSMUST00000130891.3	1103	4	16	-2878	16	-2	multi-exon	TRUE	canonical	3	31	junction_1	3.85861230093008	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAGTTGTTATTTTATTT	NA	False	NA	-3	True	NA	NA	NA	67872429	67853429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67857049_67858433_67858530_67858999_67859127_67872306
ENSMUSG00000071281.13_2	chr13	-	3895	4	FSM	ENSMUSG00000071281.13	ENSMUST00000073157.15	3957	4	61	1	61	-1	multi-exon	FALSE	canonical	2	4	junction_3	15.2970585407784	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTTGTTATTTTATTTA	NA	False	NA	-2	True	NA	NA	NA	67877231	67853428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67857049_67858433_67858530_67858999_67859127_67877179
ENSMUSG00000071281.13_4	chr13	-	4060	5	FSM	ENSMUSG00000071281.13	ENSMUST00000127979.9	733	5	-38	-3289	16	-6	multi-exon	FALSE	canonical	0	0	junction_3	18.0329559418305	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTCAAGTTGTTATTTT	NA	False	NA	-7	True	NA	NA	NA	67872429	67853433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67857049_67858433_67858530_67858999_67859127_67869565_67869665_67872306
ENSMUSG00000071291.11_0	chr13	-	4857	4	ISM	ENSMUSG00000071291.11	ENSMUST00000091523.9	820	5	301	-3845	258	2365	3prime_fragment	FALSE	canonical	1	2	junction_3	20.138409955991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGCACTGTGTCTGTATT	NA	False	NA	NA	False	AGTAAA	-30	NA	67648305	67635920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67640270_67642125_67642222_67642721_67642849_67648020
ENSMUSG00000071291.11_2	chr13	-	2286	4	FSM	ENSMUSG00000071291.11	ENSMUST00000171518.8	2300	4	11	3	-5	-2	multi-exon	FALSE	canonical	3	18	junction_3	12.657891697365	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTGTCTTTGGTCATGC	NA	False	NA	-3	True	NA	NA	NA	67648611	67638288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67648529
ENSMUSG00000071291.11_3	chr13	-	2323	4	FSM	ENSMUSG00000071291.11	ENSMUST00000076123.12	2391	4	66	2	-2	-2	multi-exon	FALSE	canonical	3	37	junction_3	4.08248290463863	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTGTCTTTGGTCATGC	NA	False	NA	-3	True	NA	NA	NA	67648608	67638288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67648489
ENSMUSG00000071291.11_8	chr13	-	2482	3	ISM	ENSMUSG00000071291.11	ENSMUST00000171518.8	2300	4	5496	3	5437	-2	3prime_fragment	FALSE	canonical	3	42	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTGTCTTTGGTCATGC	NA	False	NA	-3	True	NA	NA	NA	67643126	67638288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67640270_67642125_67642222_67642721
ENSMUSG00000071302.11_0	chr8	-	3793	4	FSM	ENSMUSG00000071302.11	ENSMUST00000186619.7	2337	4	-7	-1449	-7	-314	multi-exon	FALSE	canonical	3	23	junction_3	18.4451137763426	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGTAAGGCTGGTTATT	NA	False	NA	NA	False	AATAAA	-11	NA	129960506	129943148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_129946633_129948024_129948086_129948304_129948432_129960385
ENSMUSG00000071302.11_2	chr8	-	3809	4	NNC	ENSMUSG00000071302.11	novel	2337	4	NA	NA	-7	-314	intron_retention	FALSE	non_canonical	0	0	junction_3	28.6472802664872	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGTAAGGCTGGTTATT	NA	False	NA	NA	False	AATAAA	-11	NA	129960506	129943148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_129946633_129948024_129948086_129948304_129948448_129960385
ENSMUSG00000071302.11_3	chr8	-	3672	3	NIC	ENSMUSG00000071302.11	novel	2337	4	NA	NA	-13	-314	intron_retention	FALSE	canonical	3	10	junction_2	29	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGTAAGGCTGGTTATT	NA	False	NA	NA	False	AATAAA	-11	NA	129960512	129943148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_129946633_129948024_129948086_129960385
ENSMUSG00000071302.11_4	chr8	-	2466	1	NIC	ENSMUSG00000071302.11	novel	1776	5	NA	NA	2816	-315	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAAGTAAGGCTGGTTAT	NA	False	NA	NA	False	AATAAA	-10	NA	129945615	129943149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_129943100_129945600
ENSMUSG00000071302.11_7	chr8	-	3631	3	NIC	ENSMUSG00000071302.11	novel	343	4	NA	NA	12	-314	intron_retention	FALSE	canonical	1	1	junction_2	33.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGTAAGGCTGGTTATT	NA	False	NA	NA	False	AATAAA	-11	NA	129960875	129943148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_129946633_129948024_129948086_129960789
ENSMUSG00000071302.11_8	chr8	-	3757	4	FSM	ENSMUSG00000071302.11	ENSMUST00000189965.2	343	4	12	-3426	12	-315	multi-exon	FALSE	canonical	3	6	junction_3	25.9358182185692	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAAGTAAGGCTGGTTAT	NA	False	NA	NA	False	AATAAA	-10	NA	129960875	129943149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_129946633_129948024_129948086_129948304_129948432_129960789
ENSMUSG00000071317.5_0	chr10	+	1652	8	FSM	ENSMUSG00000071317.5	ENSMUST00000095715.5	4368	8	-57	2773	-57	-2773	multi-exon	FALSE	canonical	2	3	junction_7	2.44114392723358	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGACTTTTTTTATGGCA	NA	False	NA	NA	False	ATTAAA	-18	NA	45211810	45245802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_45211978_45215315_45215553_45219129_45219255_45222222_45222411_45223880_45223990_45229845_45230014_45230846_45230989_45245286
ENSMUSG00000071324.12_1	chr10	-	1118	3	FSM	ENSMUSG00000071324.12	ENSMUST00000162405.8	1135	3	8	9	8	-9	multi-exon	FALSE	canonical	3	5	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTAACGAGAATCCTG	NA	False	NA	NA	False	AATAAA	-24	NA	41894368	41875812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_41876495_41887763_41888020_41894188
ENSMUSG00000071337.12_1	chr6	+	3162	13	FSM	ENSMUSG00000071337.12	ENSMUST00000095753.9	4477	13	88	1227	3	-2	multi-exon	FALSE	canonical	3	90	junction_5	36.3397356744499	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTATTTCTTTGTAAAC	9769	False	NA	15	True	AATAAA	-17	NA	86381288	86409160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
ENSMUSG00000071337.12_10	chr6	+	3227	14	NIC	ENSMUSG00000071337.12	novel	4477	13	NA	NA	4	-2	intron_retention	FALSE	canonical	3	32	junction_7	51.8881363919042	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTATTTCTTTGTAAAC	9770	False	NA	15	True	AATAAA	-17	NA	86381289	86409160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86400587_86400654_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
ENSMUSG00000071337.12_2	chr6	+	4585	12	NIC	ENSMUSG00000071337.12	novel	3130	12	NA	NA	3	-3	intron_retention	FALSE	canonical	3	32	junction_5	54.2339590482715	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTTATTTCTTTGTAAA	9769	False	NA	14	True	AATAAA	-16	NA	86381288	86409159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86397394_86400587_86400654_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
ENSMUSG00000071337.12_3	chr6	+	4418	13	NIC	ENSMUSG00000071337.12	novel	4477	13	NA	NA	3	-2	intron_retention	FALSE	canonical	3	32	junction_6	51.9548415025545	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTATTTCTTTGTAAAC	9769	False	NA	15	True	AATAAA	-17	NA	86381288	86409160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86397394_86400587_86400654_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
ENSMUSG00000071337.12_57	chr6	+	2455	1	ISM	ENSMUSG00000071337.12	ENSMUST00000095753.9	4477	13	26118	614	4861	-436	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGACCTGTGGGGTCTTC	1439	False	NA	3	True	ATTAAA	-16	NA	86407318	86409773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_86407300_86409800
ENSMUSG00000071337.12_6	chr6	+	3129	12	FSM	ENSMUSG00000071337.12	ENSMUST00000095752.9	3130	12	-6	7	3	-2	multi-exon	FALSE	canonical	3	30	junction_4	49.110770393011	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTATTTCTTTGTAAAC	9769	False	NA	15	True	AATAAA	-17	NA	86381288	86409160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
ENSMUSG00000071350.13_15	chr14	-	2918	13	NIC	ENSMUSG00000071350.13	novel	2995	14	NA	NA	-2	-4	combination_of_known_splicesites	FALSE	canonical	3	13	junction_10	30.6467326516584	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAATTTGTTTTTGTGAT	NA	False	NA	NA	False	TATAAA	-7	NA	59678328	59639463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59668591_59668718_59674885_59675215_59678035
ENSMUSG00000071350.13_2	chr14	-	4057	23	Fusion	ENSMUSG00000091144.3_ENSMUSG00000071350.13	novel	2995	14	NA	NA	-2	-7	intron_retention	FALSE	canonical	2	9	junction_9	48.8120023175441	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCACTGAAGAGTTCAC	NA	False	NA	-8	True	AATAAA	-9	NA	59678328	59618288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_-_59618934_59620759_59620832_59622232_59622365_59622915_59622980_59623729_59623798_59624795_59624846_59626717_59626849_59628314_59628423_59630478_59630601_59639782_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
ENSMUSG00000071350.13_9	chr14	-	2984	14	FSM	ENSMUSG00000071350.13	ENSMUST00000161459.8	2995	14	5	6	-2	-4	multi-exon	FALSE	canonical	3	96	junction_12	10.965249034588	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAATTTGTTTTTGTGAT	NA	False	NA	NA	False	TATAAA	-7	NA	59678328	59639463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
ENSMUSG00000071359.14_0	chr10	-	2737	7	FSM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	130	6	44	-6	multi-exon	FALSE	canonical	3	232	junction_1	20.3367483471014	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCCAAGTTTTAAGTATT	NA	False	NA	-13	True	AATAAA	-15	NA	22607216	22579783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607014
ENSMUSG00000071359.14_8	chr10	-	1561	1	ISM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	26008	0	946	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTAAGTATTCCCCCT	NA	False	NA	-7	True	AATAAA	-21	NA	22581338	22579777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_22579800_22581300
ENSMUSG00000071369.12_0	chr10	+	5215	30	FSM	ENSMUSG00000071369.12	ENSMUST00000095806.10	5450	30	-212	447	-212	-447	multi-exon	FALSE	canonical	3	18	junction_4	5.46244338667921	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAAGTCCCGAGAATTCT	NA	False	NA	10	True	AGTAAA	-23	NA	19810005	20018052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_19810821_19876311_19876452_19895303_19895328_19899353_19899548_19900630_19900800_19901926_19902034_19904778_19904950_19922117_19922231_19932220_19932381_19934682_19934837_19943574_19943683_19952227_19952278_19954987_19955084_19958132_19958215_19970107_19970242_19975250_19975379_19975806_19975944_19979905_19980012_19983894_19984053_19986463_19986642_19987523_19987545_19993890_19994069_19994160_19994330_20000697_20000884_20003397_20003504_20007710_20007955_20012639_20012753_20014008_20014122_20016394_20016472_20017268
ENSMUSG00000071369.12_1	chr10	+	5169	29	NIC	ENSMUSG00000071369.12	novel	5450	30	NA	NA	-279	-452	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	7.37618893910034	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTGACAAAGTCCCGAGA	NA	False	NA	5	True	AGTAAA	-18	NA	19809938	20018047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_19810821_19876311_19876452_19895303_19895328_19899353_19899548_19900630_19900800_19901926_19902034_19904778_19904950_19922117_19922231_19932220_19932381_19934682_19934837_19952227_19952278_19954987_19955084_19958132_19958215_19970107_19970242_19975250_19975379_19975806_19975944_19979905_19980012_19983894_19984053_19986463_19986642_19987523_19987545_19993890_19994069_19994160_19994330_20000697_20000884_20003397_20003504_20007710_20007955_20012639_20012753_20014008_20014122_20016394_20016472_20017268
ENSMUSG00000071369.12_5	chr10	+	3669	23	ISM	ENSMUSG00000071369.12	ENSMUST00000095806.10	5450	30	-210	24091	-210	-9022	5prime_fragment	FALSE	canonical	3	18	junction_4	5.52473775601406	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTTGGTGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	19810007	19994408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_19810821_19876311_19876452_19895303_19895328_19899353_19899548_19900630_19900800_19901926_19902034_19904778_19904950_19922117_19922231_19932220_19932381_19934682_19934837_19943574_19943683_19952227_19952278_19954987_19955084_19958132_19958215_19970107_19970242_19975250_19975379_19975806_19975944_19979905_19980012_19983894_19984053_19986463_19986642_19987523_19987545_19993890_19994069_19994160
ENSMUSG00000071369.12_6	chr10	+	3580	19	ISM	ENSMUSG00000071369.12	ENSMUST00000095806.10	5450	30	-207	33908	-207	3408	5prime_fragment	FALSE	canonical	3	18	junction_4	5.05402907357518	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTCTTAGGTCTGTTCTT	NA	False	NA	NA	False	AATAAA	-9	NA	19810010	19984591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_19810821_19876311_19876452_19895303_19895328_19899353_19899548_19900630_19900800_19901926_19902034_19904778_19904950_19922117_19922231_19932220_19932381_19934682_19934837_19943574_19943683_19952227_19952278_19954987_19955084_19958132_19958215_19970107_19970242_19975250_19975379_19975806_19975944_19979905_19980012_19983894
ENSMUSG00000071379.3_0	chr12	+	1550	4	FSM	ENSMUSG00000071379.3	ENSMUST00000071858.5	1526	4	-35	11	-35	-11	multi-exon	FALSE	canonical	3	71	junction_1	8.52447456836295	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACCAAGGTCTGTGA	8589	False	NA	6	True	ATTAAA	-7	NA	17740821	17841923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_17741048_17836147_17836550_17837545_17837652_17841107
ENSMUSG00000071379.3_2	chr12	+	1627	5	NIC	ENSMUSG00000071379.3	novel	1526	4	NA	NA	-26	-11	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	31.8541598539343	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACCAAGGTCTGTGA	8598	False	NA	6	True	ATTAAA	-7	NA	17740830	17841923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_17741048_17817214_17817301_17836147_17836550_17837545_17837652_17841107
ENSMUSG00000071379.3_6	chr12	+	1026	3	ISM	ENSMUSG00000071379.3	ENSMUST00000222944.2	697	5	58236	-813	58236	6	3prime_fragment	FALSE	canonical	3	73	junction_2	8.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTTCCTGTGTTGCAGC	NA	False	NA	23	True	AATAAA	-11	NA	17836462	17841940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_17836550_17837545_17837652_17841107
ENSMUSG00000071379.3_7	chr12	+	1515	5	FSM	ENSMUSG00000071379.3	ENSMUST00000222944.2	697	5	-18	-800	-18	-7	multi-exon	FALSE	canonical	3	5	junction_1	35.2304910553344	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAAGGTCTGTGAGTTT	NA	False	NA	10	True	ATTAAA	-11	NA	17778208	17841927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_17778310_17817214_17817301_17836147_17836550_17837545_17837652_17841107
ENSMUSG00000071415.7_0	chr11	-	496	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	54	509	-1	2	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	1772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTGGTCTTCTTGACAC	NA	False	NA	-33	True	ATTAAA	-13	NA	97673209	97668861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
ENSMUSG00000071415.7_1	chr11	-	447	4	ISM	ENSMUSG00000071415.7	ENSMUST00000151118.2	728	5	396	-2	396	2	3prime_fragment	FALSE	canonical	3	13439	junction_1	424.830423685603	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTGGTCTTCTTGACAC	NA	False	NA	-33	True	ATTAAA	-13	NA	97672706	97668861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631
ENSMUSG00000071415.7_3	chr11	-	191	2	FSM	ENSMUSG00000071415.7	ENSMUST00000150955.2	480	2	309	-20	309	2	multi-exon	FALSE	canonical	3	13439	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTGGTCTTCTTGACAC	NA	False	NA	-33	True	ATTAAA	-13	NA	97669152	97668861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_97668991_97669090
ENSMUSG00000071419.8_0	chr6	+	482	1	FSM	ENSMUSG00000071419.8	ENSMUST00000121788.2	438	1	-11	-33	-11	33	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGGGGGGGGAAGAAG	NA	False	NA	13	True	AATAAA	-20	NA	57994479	57994961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_57994500_57995000
ENSMUSG00000071451.11_0	chr13	+	497	3	FSM	ENSMUSG00000071451.11	ENSMUST00000147632.3	555	3	53	5	53	0	multi-exon	FALSE	canonical	3	1035	junction_1	31.5	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTCATTTTACTTT	NA	False	NA	17	True	AATAAA	-17	NA	34346999	34362151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_34347233_34350043_34350120_34361963
ENSMUSG00000071451.11_1	chr13	+	425	2	FSM	ENSMUSG00000071451.11	ENSMUST00000124996.8	474	2	49	0	49	0	multi-exon	FALSE	canonical	3	173	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTCATTTTACTTT	NA	False	NA	17	True	AATAAA	-17	NA	34346995	34362151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_34347233_34361963
ENSMUSG00000071454.14_0	chr12	+	2380	20	FSM	ENSMUSG00000071454.14	ENSMUST00000164607.9	2390	20	7	3	5	0	multi-exon	FALSE	canonical	0	0	junction_4	90.3998198218487	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCCTGTGTGTGTTCCTT	NA	False	NA	24	True	AAAAAG	-4	NA	3622439	3831395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3824569_3824611_3829618_3829655_3831105
ENSMUSG00000071454.14_1	chr12	+	2334	19	NIC	ENSMUSG00000071454.14	novel	2381	21	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	85.0941562746747	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCCTGTGTGTGTTCCTT	NA	False	NA	24	True	AAAAAG	-4	NA	3622444	3831395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3829618_3829655_3831105
ENSMUSG00000071454.14_13	chr12	+	2365	20	FSM	ENSMUSG00000071454.14	ENSMUST00000173199.8	2820	20	54	401	0	0	multi-exon	FALSE	canonical	0	0	junction_4	121.930910004004	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCCTGTGTGTGTTCCTT	NA	False	NA	24	True	AAAAAG	-4	NA	3622434	3831395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3804095_3804117_3822586_3822747_3823550_3823641_3829618_3829655_3831105
ENSMUSG00000071454.14_14	chr12	+	3312	19	NIC	ENSMUSG00000071454.14	novel	2390	20	NA	NA	4	0	intron_retention	FALSE	canonical	0	0	junction_4	86.5031398844952	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGTGTGTTCCTTCC	NA	False	NA	26	True	AAAAAG	-6	NA	3622438	3831397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3824611_3829618_3829655_3831105
ENSMUSG00000071454.14_2	chr12	+	2245	18	NIC	ENSMUSG00000071454.14	novel	2820	20	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	112.136872618653	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGAGCCTGTGTGTGTT	NA	False	NA	20	True	NA	NA	NA	3622439	3831391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3829618_3829655_3831105
ENSMUSG00000071456.7_0	chr12	-	3039	3	FSM	ENSMUSG00000071456.7	ENSMUST00000168012.3	3569	3	293	237	-4	-237	multi-exon	FALSE	canonical	3	14	junction_1	29.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATATGTTTTATCTT	NA	False	NA	NA	False	NA	NA	NA	3476718	3454114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_3456712_3457700_3457925_3476500
ENSMUSG00000071456.7_2	chr12	-	2039	1	ISM	ENSMUSG00000071456.7	ENSMUST00000168012.3	3569	3	20902	193	20605	-193	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTAACTTTTTAAAATA	NA	False	NA	NA	False	AATAAA	-9	NA	3456109	3454070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_3454100_3456100
ENSMUSG00000071456.7_3	chr12	-	3139	3	FSM	ENSMUSG00000071456.7	ENSMUST00000095903.7	1923	3	19	-1235	-7	-197	multi-exon	FALSE	canonical	3	62	junction_1	5.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAAAATTAACTTTTTAA	NA	False	NA	NA	False	AATAAA	-5	NA	3476721	3454074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_3456712_3457643_3457925_3476500
ENSMUSG00000071456.7_5	chr12	-	4106	2	FSM	ENSMUSG00000071456.7	ENSMUST00000180149.2	948	2	-9	-3149	-9	-197	multi-exon	FALSE	canonical	3	73	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAAAATTAACTTTTTAA	NA	False	NA	NA	False	AATAAA	-5	NA	3476756	3454074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_3457925_3476500
ENSMUSG00000071470.5_0	chr14	-	1474	4	FSM	ENSMUSG00000071470.5	ENSMUST00000095932.5	1509	4	31	4	31	-4	multi-exon	FALSE	canonical	3	174	junction_1	17.4419672692682	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTCTTTTCTTTT	8907	False	NA	-3	True	AATAAA	-16	NA	51033154	51026708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_51027470_51029429_51029764_51031014_51031332_51033092
ENSMUSG00000071470.5_1	chr14	-	1545	5	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	31	-3	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	80.7971998277168	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTTCTTTTCTTTTT	8907	False	NA	-2	True	AATAAA	-17	NA	51033154	51026707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_51027470_51027592_51027663_51029429_51029764_51031014_51031332_51033092
ENSMUSG00000071470.5_2	chr14	-	1427	4	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	35	-8	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	82.8908251188809	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTTTCTTTTTTCTTTTC	8911	False	NA	-7	True	AATAAA	-12	NA	51033150	51026712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_51027470_51029468_51029764_51031014_51031332_51033092
ENSMUSG00000071470.5_4	chr14	-	823	1	NIC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	5656	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTTCTTTTCTTTTTG	NA	False	NA	-1	True	AATAAA	-18	NA	51027529	51026706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_51026700_51027500
ENSMUSG00000071470.5_5	chr14	-	1410	3	ISM	ENSMUSG00000071470.5	ENSMUST00000095932.5	1509	4	1852	8	1852	-8	3prime_fragment	FALSE	canonical	3	174	junction_1	20	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTTTCTTTTTTCTTTTC	8033	False	NA	-7	True	AATAAA	-12	NA	51031333	51026712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_51027470_51029429_51029764_51031014
ENSMUSG00000071477.11_0	chr6	-	3486	6	FSM	ENSMUSG00000071477.11	ENSMUST00000114583.8	3111	6	-396	21	-396	-4	multi-exon	FALSE	canonical	3	22	junction_5	40.7401521843009	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACGAGTGTTTCCTGT	NA	False	NA	-7	True	AATAGA	-10	NA	48025444	48001142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777_48021636_48024919
ENSMUSG00000071477.11_1	chr6	-	3188	6	NIC	ENSMUSG00000071477.11	novel	3111	6	NA	NA	-64	-4	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	38.9122088810183	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACGAGTGTTTCCTGT	NA	False	NA	-7	True	AATAGA	-10	NA	48024792	48001142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777_48021636_48024565
ENSMUSG00000071477.11_12	chr6	-	2382	5	ISM	ENSMUSG00000071477.11	ENSMUST00000114583.8	3111	6	3992	21	121	-4	3prime_fragment	FALSE	canonical	3	96	junction_1	18.0623918681884	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACGAGTGTTTCCTGT	NA	False	NA	-7	True	AATAGA	-10	NA	48021056	48001142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777
ENSMUSG00000071477.11_3	chr6	-	1421	1	ISM	ENSMUSG00000071477.11	ENSMUST00000114583.8	3111	6	22351	155	18480	-138	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATCTGCACGGGGGCAGT	NA	False	NA	-6	True	AATAAA	-11	NA	48002697	48001276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_48001300_48002700
ENSMUSG00000071477.11_4	chr6	-	3125	6	FSM	ENSMUSG00000071477.11	ENSMUST00000095944.10	3184	6	40	19	40	-19	multi-exon	FALSE	canonical	3	42	junction_5	33.5463857963865	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAGAGTAATTTTTAAAAG	NA	False	NA	-22	True	NA	NA	NA	48025805	48001157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777_48021636_48025626
ENSMUSG00000071497.5_0	chr19	-	865	1	FSM	ENSMUSG00000071497.5	ENSMUST00000095978.5	901	1	14	22	14	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53577485	53576620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_53576600_53577500
ENSMUSG00000071516.3_0	chr13	+	462	1	FSM	ENSMUSG00000071516.3	ENSMUST00000070124.5	393	1	-25	-44	-25	44	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTCTCCAAAGAGACCTA	3374	False	NA	2	True	NA	NA	NA	21900566	21901028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_21900600_21901000
ENSMUSG00000071528.5_0	chr19	-	358	4	FSM	ENSMUSG00000071528.5	ENSMUST00000096014.5	362	4	4	0	4	0	multi-exon	FALSE	canonical	3	3669	junction_3	1157.30270696804	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTGGTTGTCTTTATT	NA	False	NA	-4	True	AATAAA	-13	NA	47079078	47071906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_47072009_47074393_47074487_47074572_47074669_47079011
ENSMUSG00000071528.5_1	chr19	-	292	3	ISM	ENSMUSG00000071528.5	ENSMUST00000096014.5	362	4	4412	1	4394	-1	3prime_fragment	FALSE	canonical	3	5910	junction_1	191.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGCTGGTTGTCTTTAT	NA	False	NA	-5	True	AATAAA	-12	NA	47074670	47071907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_47072009_47074393_47074487_47074572
ENSMUSG00000071528.5_2	chr19	-	435	5	NNC	ENSMUSG00000071528.5	novel	425	5	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2533.27548590752	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTGGTTGTCTTTATT	NA	False	NA	-4	True	AATAAA	-13	NA	47079069	47071906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_47072009_47073211_47073298_47074393_47074487_47074572_47074669_47079011
ENSMUSG00000071531.4_0	chr14	-	2617	1	ISM	ENSMUSG00000071531.4	ENSMUST00000226613.2	10354	2	13328	1	13328	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGTTGTTTATTTAAG	NA	False	NA	0	True	AATAAA	-16	NA	33910262	33907645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_33907600_33910300
ENSMUSG00000071531.4_1	chr14	-	3066	2	FSM	ENSMUSG00000071531.4	ENSMUST00000226511.2	438	2	-1	-2627	-1	2627	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGATTAGAGCTTTGACAG	NA	False	NA	NA	False	AATAAA	-17	NA	33923611	33914745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_33917775_33923574
ENSMUSG00000071531.4_2	chr14	-	3249	2	FSM	ENSMUSG00000071531.4	ENSMUST00000226613.2	10354	2	3	7102	3	2626	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGATTAGAGCTTTGACA	NA	False	NA	NA	False	AATAAA	-16	NA	33923587	33914746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_33917775_33923366
ENSMUSG00000071532.7_0	chr10	+	519	1	FSM	ENSMUSG00000071532.7	ENSMUST00000096020.7	468	1	-8	-43	-8	43	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACCATAAAAAAAAAAAAAAG	7718	False	NA	NA	False	AATATA	-11	NA	14398813	14399332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_14398800_14399300
ENSMUSG00000071533.12_0	chr16	-	2236	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	56	3	3	-3	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTGGTCTTATTTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	55850046	55835871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
ENSMUSG00000071533.12_1	chr16	-	2433	5	FSM	ENSMUSG00000071533.12	ENSMUST00000130818.8	938	5	-5	-1490	5	-3	multi-exon	FALSE	canonical	3	279	junction_4	876.141113063415	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTGGTCTTATTTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	55850044	55835871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55845001_55849965
ENSMUSG00000071533.12_12	chr16	-	1238	1	ISM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	12950	3	7882	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTGGTCTTATTTTCT	1764	False	NA	NA	False	AATAAA	-13	NA	55837109	55835871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_55835900_55837100
ENSMUSG00000071533.12_5	chr16	-	2183	5	FSM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	14	3	4	-3	multi-exon	FALSE	canonical	3	494	junction_4	790.763357459107	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTGGTCTTATTTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	55850045	55835871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
ENSMUSG00000071533.12_9	chr16	-	5168	4	ISM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	2245	3	2225	-3	3prime_fragment	FALSE	canonical	3	1624	junction_1	383.115590332155	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTGGTCTTATTTTCT	-3	True	NA	NA	False	AATAAA	-13	NA	55847814	55835871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586
ENSMUSG00000071537.7_1	chr6	-	2205	5	FSM	ENSMUSG00000071537.7	ENSMUST00000096030.7	2276	5	34	37	34	-37	multi-exon	TRUE	canonical	3	11	junction_3	4.14578098794425	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAAAGACTAGACCTTCAC	NA	False	NA	NA	False	AATAAA	-8	NA	38614134	38603631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_38604661_38605019_38605124_38606698_38606845_38607215_38607318_38613310
ENSMUSG00000071547.5_1	chr14	+	1807	14	FSM	ENSMUSG00000071547.5	ENSMUST00000227096.2	1848	14	38	3	38	0	multi-exon	FALSE	canonical	3	528	junction_7	36.4029064448587	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCTCTGCTTCATTCCA	NA	False	NA	17	True	AATAAA	-19	NA	30853047	30861078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_30853334_30856695_30856881_30856986_30857062_30857294_30857351_30857450_30857545_30857642_30857772_30857874_30857936_30858021_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
ENSMUSG00000071547.5_38	chr14	+	302	1	ISM	ENSMUSG00000071547.5	ENSMUST00000227096.2	1848	14	7767	3	797	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCTCTGCTTCATTCCA	NA	False	NA	17	True	AATAAA	-19	NA	30860776	30861078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_30860800_30861100
ENSMUSG00000071553.11_1	chr6	+	1079	7	ISM	ENSMUSG00000071553.11	ENSMUST00000096066.5	1388	11	5363	8	303	-8	3prime_fragment	FALSE	canonical	2	2	junction_5	2.98142396999972	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCACAACTGGCTTCTGGT	1952	False	NA	NA	False	ATTAAA	-14	NA	30546943	30564467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_30547206_30549240_30549340_30550743_30550855_30551964_30552056_30554162_30554363_30557670_30557756_30564236
ENSMUSG00000071573.15_0	chr19	-	1614	7	FSM	ENSMUSG00000071573.15	ENSMUST00000096114.13	1597	7	-19	2	11	-2	multi-exon	FALSE	canonical	2	11	junction_4	3.8151743807532	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATGTCGTTTTATAGCC	NA	False	NA	NA	False	AATAAA	-13	NA	33369684	33115148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33367316_33367460_33368479_33368586_33369354
ENSMUSG00000071604.6_0	chr19	-	2525	11	FSM	ENSMUSG00000071604.6	ENSMUST00000096164.6	2548	11	13	10	13	-10	multi-exon	FALSE	canonical	3	34	junction_3	7.73627817493658	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCTGGACTCCATGTGT	NA	False	NA	-14	True	AATAAA	-14	NA	24008370	23950123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_23950996_23952724_23953018_23955325_23955479_23956753_23956833_23956949_23957080_23962072_23962207_23963772_23963881_23965810_23965940_23972144_23972256_23998969_23999027_24007911
ENSMUSG00000071604.6_13	chr19	-	1597	9	ISM	ENSMUSG00000071604.6	ENSMUST00000096164.6	2548	11	0	4988	0	-4526	5prime_fragment	FALSE	canonical	3	34	junction_1	8.5868722477978	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTATTGTTGTGTTGTGTT	NA	False	NA	NA	False	ATTAAA	-12	NA	24008383	23955101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_23955479_23956753_23956833_23956949_23957080_23962072_23962207_23963772_23963881_23965810_23965940_23972144_23972256_23998969_23999027_24007911
ENSMUSG00000071604.6_3	chr19	-	2421	10	NIC	ENSMUSG00000071604.6	novel	2548	11	NA	NA	6	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	17.9471102251058	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCTGGACTCCATGTGT	NA	False	NA	-14	True	AATAAA	-14	NA	24008377	23950123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_23950996_23952724_23953018_23955325_23955479_23956753_23956833_23956949_23957080_23962072_23962207_23963772_23963881_23965810_23965940_23998969_23999027_24007911
ENSMUSG00000071604.6_8	chr19	-	2465	10	NIC	ENSMUSG00000071604.6	novel	2548	11	NA	NA	14	-12	combination_of_known_splicesites	FALSE	canonical	1	2	junction_9	17.1406671146663	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGTCTGGACTCCATGT	NA	False	NA	-16	True	AATAAA	-12	NA	24008369	23950125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_23950996_23952724_23953018_23955325_23955479_23956753_23956833_23956949_23957080_23962072_23962207_23963772_23963881_23965810_23965940_23972144_23972256_24007911
ENSMUSG00000071632.11_0	chr16	+	1277	3	FSM	ENSMUSG00000071632.11	ENSMUST00000055413.13	1281	3	3	1	0	-1	multi-exon	FALSE	canonical	3	86	junction_1	45.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGTCTCAATTAGGGT	NA	False	NA	16	True	ATTAAA	-16	NA	18655330	18658909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18655370_18655455_18655624_18657839
ENSMUSG00000071632.11_1	chr16	+	1332	3	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	-1	intron_retention	TRUE	canonical	0	0	junction_2	88.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGTCTCAATTAGGGT	NA	False	NA	16	True	ATTAAA	-16	NA	18655330	18658909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_18655624_18657839_18658618_18658648
ENSMUSG00000071632.11_3	chr16	+	1246	4	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	72.2695571377664	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGTCTCAATTAGGGT	NA	False	NA	16	True	ATTAAA	-16	NA	18655330	18658909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_18655370_18655455_18655624_18657839_18658618_18658648
ENSMUSG00000071632.11_4	chr16	+	1363	2	FSM	ENSMUSG00000071632.11	ENSMUST00000190776.2	930	2	-74	-359	0	-1	multi-exon	FALSE	canonical	3	177	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGTCTCAATTAGGGT	NA	False	NA	16	True	ATTAAA	-16	NA	18655330	18658909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18655624_18657839
ENSMUSG00000071636.9_0	chr16	+	3690	1	FSM	ENSMUSG00000071636.9	ENSMUST00000169803.5	5380	1	1681	9	1681	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAATATTTCGGGAGT	1725	False	NA	NA	False	ATTAAA	-11	NA	17028147	17031837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17028100_17031800
ENSMUSG00000071637.6_0	chr16	+	1212	1	FSM	ENSMUSG00000071637.6	ENSMUST00000096232.6	3746	1	-33	2567	-33	-1517	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCAGCTTCCTATGTTCA	NA	False	NA	6	True	AATAAA	-15	NA	15705116	15706328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_15705100_15706300
ENSMUSG00000071644.11_1	chr19	+	1411	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	152	301	152	-301	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	6939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACTTTTTCCTGTCCTGC	995	False	NA	9	True	ATTAAA	-14	NA	8944556	8955542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_3	chr19	+	1375	9	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	1176	303	1	-303	3prime_fragment	FALSE	canonical	3	8704	junction_3	383.621700865579	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGAACTTTTTCCTGTCCT	2019	False	NA	7	True	ATTAAA	-12	NA	8945580	8955540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071645.7_1	chr19	+	2743	9	FSM	ENSMUSG00000071645.7	ENSMUST00000096239.7	2753	9	1	9	1	-9	multi-exon	FALSE	canonical	3	129	junction_7	18.3234822018087	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGACATTTAATGTTCT	1358	False	NA	2	True	AATAAA	-17	NA	8931211	8943565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707_8940187_8941383_8941494_8941627_8941739_8941924_8942018_8942397
ENSMUSG00000071645.7_18	chr19	+	938	1	ISM	ENSMUSG00000071645.7	ENSMUST00000096239.7	2753	9	11417	9	1420	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGACATTTAATGTTCT	96	False	NA	2	True	AATAAA	-17	NA	8942627	8943565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8942600_8943600
ENSMUSG00000071645.7_5	chr19	+	1951	5	FSM	ENSMUSG00000071645.7	ENSMUST00000236564.2	1858	5	-95	2	-12	-2	multi-exon	FALSE	canonical	3	135	junction_1	17.1955662890176	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATTTGTGTCCGCATCT	1345	False	NA	NA	False	AATAAA	-22	NA	8931198	8940863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707
ENSMUSG00000071646.10_3	chr19	+	3113	18	FSM	ENSMUSG00000071646.10	ENSMUST00000096240.3	3135	18	13	9	13	-9	multi-exon	FALSE	canonical	3	728	junction_3	72.954410564141	1603	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCTCCAGGCTCAGCTA	3482	False	NA	11	True	AATAAA	-15	NA	8919251	8929658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
ENSMUSG00000071647.6_1	chr19	+	3271	22	FSM	ENSMUSG00000071647.6	ENSMUST00000096241.6	3322	22	32	19	32	-19	multi-exon	FALSE	canonical	3	31	junction_2	12.0183155765295	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAGAAAAAAGTAAC	1947	False	NA	-13	True	NA	NA	NA	8906947	8918927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8907317_8908162_8908335_8908407_8908669_8908753_8908868_8910605_8910674_8910786_8910911_8911133_8911305_8911450_8911521_8911605_8911717_8912314_8912411_8913667_8913824_8913982_8914125_8914492_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
ENSMUSG00000071647.6_3	chr19	+	3223	22	FSM	ENSMUSG00000071647.6	ENSMUST00000224272.2	2978	22	-264	19	77	-19	multi-exon	FALSE	canonical	3	39	junction_2	11.2769706937285	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAGAAAAAAGTAAC	1992	False	NA	-13	True	NA	NA	NA	8906992	8918927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8907317_8908162_8908335_8908410_8908669_8908753_8908868_8910605_8910674_8910786_8910911_8911133_8911305_8911450_8911521_8911605_8911717_8912314_8912411_8913667_8913824_8913982_8914125_8914492_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
ENSMUSG00000071648.5_0	chr19	-	1676	3	FSM	ENSMUSG00000071648.5	ENSMUST00000096242.5	1517	3	-164	5	-164	-5	multi-exon	FALSE	canonical	0	0	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATCACTGTTCTCCCGC	NA	False	NA	NA	False	AATAAA	-11	NA	8906884	8904759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8905252_8905341_8905589_8905947
ENSMUSG00000071649.7_0	chr19	+	1556	5	FSM	ENSMUSG00000071649.7	ENSMUST00000096243.7	1603	5	43	4	22	-4	multi-exon	FALSE	canonical	3	179	junction_3	18.060661671157	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGGGGCTTCATGGTTTC	4755	False	NA	15	True	AATAAA	-12	NA	8897780	8904596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8898013_8899169_8899345_8902901_8903263_8903445_8903737_8904099
ENSMUSG00000071649.7_2	chr19	+	1339	5	FSM	ENSMUSG00000071649.7	ENSMUST00000237071.2	909	5	-16	-414	-16	-4	multi-exon	FALSE	canonical	3	30	junction_2	75.1644031440415	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGGGGCTTCATGGTTTC	4806	False	NA	15	True	AATAAA	-12	NA	8897831	8904596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8898013_8899169_8899345_8903067_8903263_8903445_8903737_8904099
ENSMUSG00000071649.7_3	chr19	+	1688	4	NIC	ENSMUSG00000071649.7	novel	1603	5	NA	NA	-16	-4	intron_retention	FALSE	canonical	3	186	junction_2	17.6131264181639	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGGGGCTTCATGGTTTC	4806	False	NA	15	True	AATAAA	-12	NA	8897831	8904596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_8898013_8899169_8899345_8902901_8903737_8904099
ENSMUSG00000071649.7_8	chr19	+	898	3	ISM	ENSMUSG00000071649.7	ENSMUST00000096243.7	1603	5	5415	4	5305	-4	3prime_fragment	FALSE	canonical	3	179	junction_1	23.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGGGGCTTCATGGTTTC	5044	False	NA	15	True	AATAAA	-12	NA	8903152	8904596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8903263_8903445_8903737_8904099
ENSMUSG00000071650.7_4	chr19	+	3759	24	FSM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	1	28	1	-28	multi-exon	FALSE	canonical	3	708	junction_5	142.157557894544	1731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACGAAACAAAACATA	1900	False	NA	-84	True	GATAAA	-14	NA	8875471	8894008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
ENSMUSG00000071650.7_6	chr19	+	3825	25	FSM	ENSMUSG00000071650.7	ENSMUST00000096246.5	3860	25	7	28	1	-28	multi-exon	FALSE	canonical	3	261	junction_6	273.686404967234	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACGAAACAAAACATA	1900	False	NA	-84	True	GATAAA	-14	NA	8875471	8894008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
ENSMUSG00000071650.7_7	chr19	+	5035	23	NIC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	1	-35	intron_retention	FALSE	canonical	3	992	junction_1	106.357585297962	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAATAAAAAACGAAACA	1900	False	NA	-91	True	GATAAA	-7	NA	8875471	8894001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
ENSMUSG00000071652.9_0	chr19	+	3257	2	FSM	ENSMUSG00000071652.9	ENSMUST00000096249.7	3274	2	10	7	10	-7	multi-exon	FALSE	canonical	3	204	junction_1	0	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAACAGTCCAGTGTTT	NA	False	NA	13	True	AATAAA	-14	NA	8870378	8875245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8870513_8872122
ENSMUSG00000071652.9_4	chr19	+	2223	1	ISM	ENSMUSG00000071652.9	ENSMUST00000096249.7	3274	2	2654	7	2654	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAACAGTCCAGTGTTT	1361	False	NA	13	True	AATAAA	-14	NA	8873022	8875245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8873000_8875200
ENSMUSG00000071653.10_0	chr19	+	615	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	50	141	4	-1	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGTGTGGGATGAAGTGCA	NA	False	NA	26	True	AATAAA	-15	NA	8866266	8868104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
ENSMUSG00000071653.10_5	chr19	+	711	5	FSM	ENSMUSG00000071653.10	ENSMUST00000185488.7	500	5	-17	-194	-1	-1	multi-exon	FALSE	canonical	3	137	junction_2	1592.05511839258	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGTGTGGGATGAAGTGCA	NA	False	NA	26	True	AATAAA	-15	NA	8866261	8868104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8866329_8866487_8866613_8867000_8867092_8867366_8867465_8867774
ENSMUSG00000071653.10_6	chr19	+	554	3	FSM	ENSMUSG00000071653.10	ENSMUST00000186647.7	784	3	224	6	184	-1	multi-exon	FALSE	canonical	3	2965	junction_1	112.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGTGTGGGATGAAGTGCA	NA	False	NA	26	True	AATAAA	-15	NA	8866486	8868104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8866613_8867366_8867465_8867774
ENSMUSG00000071654.7_0	chr19	-	540	2	FSM	ENSMUSG00000071654.7	ENSMUST00000096253.7	821	2	29	252	29	-252	multi-exon	FALSE	canonical	3	500	junction_1	0	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCGCAGCTGGACATCTA	NA	False	NA	-7	True	AATAAA	-22	NA	8858258	8857629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8857981_8858069
ENSMUSG00000071655.13_0	chr19	+	1101	9	FSM	ENSMUSG00000071655.13	ENSMUST00000238036.2	1291	9	-11	201	-11	-1	multi-exon	FALSE	canonical	3	1115	junction_4	107.257575490032	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGCCTGGCTCCTTCCA	5935	False	NA	31	True	AATAAA	-19	NA	8848945	8853026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUSG00000071655.13_1	chr19	+	1062	10	FSM	ENSMUSG00000071655.13	ENSMUST00000166407.9	1033	10	-23	-6	-23	-1	multi-exon	FALSE	canonical	3	339	junction_1	323.787653323045	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGCCTGGCTCCTTCCA	5889	False	NA	31	True	AATAAA	-19	NA	8848899	8853026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8848950_8849034_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUSG00000071655.13_21	chr19	+	608	5	ISM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	1941	2	1941	-1	3prime_fragment	FALSE	canonical	3	1340	junction_4	26.9583011334171	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGCCTGGCTCCTTCCA	18	False	NA	31	True	AATAAA	-19	NA	8850964	8853026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUSG00000071656.8_0	chr19	+	2635	2	FSM	ENSMUSG00000071656.8	ENSMUST00000096257.3	2583	2	-148	96	-131	3	multi-exon	FALSE	canonical	2	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTCAGTTTCATGATC	1287	False	NA	NA	False	ATTAAA	-18	NA	8828000	8831177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8828477_8829018
ENSMUSG00000071656.8_1	chr19	+	1448	1	ISM	ENSMUSG00000071656.8	ENSMUST00000235683.2	2420	2	1589	6	1572	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCATTACATTTTCAGT	3007	False	NA	NA	False	ATTAAA	-9	NA	8829720	8831168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8829700_8831200
ENSMUSG00000071657.13_0	chr19	+	1827	12	FSM	ENSMUSG00000071657.13	ENSMUST00000171649.8	1962	12	117	18	-103	-1	multi-exon	FALSE	canonical	0	0	junction_7	50.3060057535483	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCTTGTGTGGACATC	NA	False	NA	12	True	AATAAA	-12	NA	8814947	8826029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUSG00000071657.13_10	chr19	+	1602	11	FSM	ENSMUSG00000071657.13	ENSMUST00000160556.8	1795	11	193	0	131	0	multi-exon	FALSE	canonical	0	0	junction_6	47.8256207487158	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8816884	8826030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUSG00000071657.13_15	chr19	+	1363	11	FSM	ENSMUSG00000071657.13	ENSMUST00000086058.13	1388	11	24	1	8	-1	multi-exon	FALSE	canonical	0	0	junction_6	60.1671837466239	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCTTGTGTGGACATC	NA	False	NA	12	True	AATAAA	-12	NA	8817906	8826029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8817933_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUSG00000071657.13_18	chr19	+	1339	10	FSM	ENSMUSG00000071657.13	ENSMUST00000162071.8	1911	10	572	0	572	0	multi-exon	FALSE	canonical	0	0	junction_5	49.7082848250361	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8818470	8826030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUSG00000071657.13_21	chr19	+	511	5	ISM	ENSMUSG00000071657.13	ENSMUST00000162580.8	3495	9	6922	0	1267	0	3prime_fragment	FALSE	canonical	3	132	junction_1	11.8110118110177	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	1958	False	NA	13	True	AATAAA	-13	NA	8824820	8826030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUSG00000071657.13_7	chr19	+	1108	4	ISM	ENSMUSG00000071657.13	ENSMUST00000159634.8	1684	12	-48	5261	-6	3163	5prime_fragment	FALSE	canonical	3	57	junction_1	48.787521173167	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATTAATGTCATTTTTTA	NA	False	NA	NA	False	AATAAA	-17	NA	8815044	8820770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372
ENSMUSG00000071658.6_0	chr19	-	770	3	FSM	ENSMUSG00000071658.6	ENSMUST00000096259.6	1643	3	-7	880	-7	-880	multi-exon	TRUE	canonical	3	189	junction_2	8	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACAACGTCTGTGTTA	4755	False	NA	-7	True	AATAAA	-16	NA	8816565	8815176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8815636_8815917_8816018_8816354
ENSMUSG00000071659.5_1	chr19	+	3045	14	FSM	ENSMUSG00000071659.5	ENSMUST00000096753.5	5118	14	-3	2076	-3	-2076	multi-exon	FALSE	canonical	3	91	junction_1	16.0266050992067	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAACTAACCGTTTGTATT	NA	False	NA	16	True	AATAAA	-26	NA	8797370	8809431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8798178_8800167_8800304_8800593_8800671_8800893_8801034_8801584_8801676_8801769_8801883_8802223_8802488_8802634_8802758_8803335_8803465_8804007_8804177_8807113_8807315_8808251_8808326_8808588_8808697_8808818
ENSMUSG00000071659.5_18	chr19	+	1603	8	ISM	ENSMUSG00000071659.5	ENSMUST00000096753.5	5118	14	4931	2073	4669	-2073	3prime_fragment	FALSE	canonical	3	98	junction_7	14.800717026205	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAACCGTTTGTATTTTC	NA	False	NA	19	True	AATAAA	-29	NA	8802304	8809434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8802488_8802634_8802758_8803335_8803465_8804007_8804177_8807113_8807315_8808251_8808326_8808588_8808697_8808818
ENSMUSG00000071659.5_22	chr19	+	2997	4	ISM	ENSMUSG00000071659.5	ENSMUST00000096753.5	5118	14	9809	6	9547	-6	3prime_fragment	FALSE	canonical	3	98	junction_3	13.0724477007517	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATTTTCCTATCTCCT	4337	False	NA	9	True	AATAAA	-12	NA	8807182	8811501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8807315_8808251_8808326_8808588_8808697_8808818
ENSMUSG00000071659.5_25	chr19	+	2277	1	ISM	ENSMUSG00000071659.5	ENSMUST00000096753.5	5118	14	11851	6	11589	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATTTTCCTATCTCCT	6379	False	NA	9	True	AATAAA	-12	NA	8809224	8811501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8809200_8811500
ENSMUSG00000071660.11_0	chr19	-	3464	4	FSM	ENSMUSG00000071660.11	ENSMUST00000096751.11	3509	4	45	0	6	0	multi-exon	FALSE	canonical	3	197	junction_3	24.7116706571342	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATGCATCTTAGAAATT	1930	False	NA	-13	True	AATAAA	-11	NA	8796652	8786438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8789203_8793217_8793401_8795799_8796049_8796384
ENSMUSG00000071660.11_1	chr19	-	3489	3	FSM	ENSMUSG00000071660.11	ENSMUST00000088092.6	1585	3	317	-2221	-53	0	multi-exon	FALSE	canonical	3	241	junction_2	7	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATGCATCTTAGAAATT	2241	False	NA	-13	True	AATAAA	-11	NA	8796341	8786438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8789203_8793217_8793401_8795799
ENSMUSG00000071660.11_2	chr19	-	2124	1	Genic_Genomic	ENSMUSG00000071660.11	novel	NA	NA	NA	NA	7728	2	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGCATCTTAGAAATTTA	9970	False	NA	-11	True	AATAAA	-13	NA	8788560	8786436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_-_8786400_8788600
ENSMUSG00000071661.8_0	chr19	+	2052	2	FSM	ENSMUSG00000071661.8	ENSMUST00000172175.3	2004	2	-49	1	-49	-1	multi-exon	FALSE	canonical	3	20	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCTTTGAACTGGTGTTG	5379	False	NA	11	True	CATAAA	-16	NA	8779869	8782209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8780050_8780337
ENSMUSG00000071661.8_1	chr19	+	1910	2	NNC	ENSMUSG00000071661.8	novel	2004	2	NA	NA	-61	-1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCTTTGAACTGGTGTTG	5367	False	NA	11	True	CATAAA	-16	NA	8779857	8782209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_8779896_8780337
ENSMUSG00000071661.8_5	chr19	+	1999	1	NIC	ENSMUSG00000071661.8	novel	2004	2	NA	NA	292	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCTTTGAACTGGTGTTG	5720	False	NA	11	True	CATAAA	-16	NA	8780210	8782209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_8780200_8782200
ENSMUSG00000071662.5_0	chr19	-	864	8	FSM	ENSMUSG00000071662.5	ENSMUST00000096261.5	890	8	25	1	-17	-1	multi-exon	FALSE	canonical	3	1319	junction_5	79.6292429106959	415	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGGTTTGGTTTTATG	NA	False	NA	-2	True	ATTAAA	-16	NA	8775916	8770491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587_8775698_8775822
ENSMUSG00000071665.11_2	chrX	+	3247	4	FSM	ENSMUSG00000071665.11	ENSMUST00000096265.10	3210	4	-37	0	-37	0	multi-exon	FALSE	canonical	1	1	junction_1	0.942809041582063	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGAGTTGATGTTTCTT	NA	False	NA	NA	False	AATAAA	-11	NA	151901744	151915857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_151901847_151902010_151902087_151909895_151909940_151912832
ENSMUSG00000071669.15_0	chr16	+	6217	21	NIC	ENSMUSG00000071669.15	novel	2667	21	NA	NA	-3	3544	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	3.01827765455731	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGCTGTGGATTTTGTT	NA	False	NA	-72	True	ATTAAA	-13	NA	11140768	11576880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_11140843_11165722_11165785_11167769_11167823_11185540_11185666_11213082_11213264_11217628_11217700_11218664_11218914_11221323_11221697_11231089_11231221_11236686_11236763_11238564_11238648_11263028_11263093_11265243_11265373_11328823_11328907_11389562_11389670_11449321_11449439_11473999_11474056_11478409_11478492_11532777_11532919_11556157_11556298_11573060
ENSMUSG00000071669.15_3	chr16	+	4368	6	ISM	ENSMUSG00000071669.15	ENSMUST00000096273.9	1622	14	225864	-3610	184204	3610	3prime_fragment	FALSE	canonical	1	4	junction_3	2.92574776766556	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCTAAATTAGACCTTC	2066	False	NA	-6	True	ATTAAA	-6	NA	11449375	11576946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_11449439_11473999_11474056_11478409_11478492_11532777_11532919_11556157_11556298_11573060
ENSMUSG00000071708.12_0	chrX	-	1511	1	Genic_Genomic	ENSMUSG00000071708.12	novel	NA	NA	NA	NA	15498	2	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCGTCTCCATTATGCCT	6875	False	NA	-2	True	AATAAA	-13	NA	156228359	156226848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_156226800_156228400
ENSMUSG00000071708.12_1	chrX	-	1676	11	FSM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	243	1798	0	43	multi-exon	FALSE	canonical	0	0	junction_5	141.867156170835	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACGGTGTTTGTCCCTTTA	NA	False	NA	-3	True	ATTAAA	-18	NA	156275040	156228648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ENSMUSG00000071708.12_7	chrX	-	2431	10	NIC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	-1	38	intron_retention	FALSE	canonical	3	342	junction_4	49.2072964578563	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTTACGGTGTTTGTCC	NA	False	NA	-8	True	ATTAAA	-13	NA	156275041	156228653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ENSMUSG00000071711.13_0	chr15	+	1250	2	FSM	ENSMUSG00000071711.13	ENSMUST00000229739.2	1311	2	57	4	57	0	multi-exon	FALSE	canonical	3	16	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACAAAAACATTTGTGG	NA	False	NA	NA	False	AATAAA	-6	NA	78294238	78298202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78294865_78297578
ENSMUSG00000071719.3_0	chrX	+	4729	3	FSM	ENSMUSG00000071719.3	ENSMUST00000096363.3	3909	3	-824	4	-824	-4	multi-exon	FALSE	canonical	3	13	junction_2	4.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAAATCTCTCTTGGTGG	NA	False	NA	NA	False	AATAAA	-11	NA	98863802	98892392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_98865533_98888994_98889167_98889565
ENSMUSG00000071719.3_1	chrX	+	2436	1	ISM	ENSMUSG00000071719.3	ENSMUST00000096363.3	3909	3	25330	4	25330	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAAATCTCTCTTGGTGG	NA	False	NA	NA	False	AATAAA	-11	NA	98889956	98892392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_98890000_98892400
ENSMUSG00000071722.5_0	chrX	-	4161	1	FSM	ENSMUSG00000071722.5	ENSMUST00000096367.5	4173	1	6	6	6	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACCAATAATAGTAGTGA	NA	False	NA	NA	False	AATAAA	-19	NA	94070282	94066121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_94066100_94070300
ENSMUSG00000071723.8_0	chrX	+	2481	1	FSM	ENSMUSG00000071723.8	ENSMUST00000096368.4	2491	1	2	8	2	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATTTGAAATGTGTTTGA	4258	False	NA	14	True	AATAAA	-20	NA	93679676	93682157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_93679700_93682200
ENSMUSG00000071723.8_1	chrX	+	3606	4	NIC	ENSMUSG00000071723.8	novel	1925	5	NA	NA	-4	0	intron_retention	FALSE	canonical	2	4	junction_1	4.71404520791032	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTATGTTGGTCATAAT	4252	False	NA	2	True	NA	NA	NA	93679670	93686850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_93681987_93682698_93682841_93684531_93685195_93686365
ENSMUSG00000071723.8_2	chrX	+	4234	2	NIC	ENSMUSG00000071723.8	novel	1925	5	NA	NA	1765	1	intron_retention	FALSE	canonical	2	14	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTATGTTGGTCATAATT	6028	False	NA	3	True	NA	NA	NA	93681446	93686851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_93685195_93686365
ENSMUSG00000071745.2_1	chrX	-	3545	6	NNC	ENSMUSG00000071745.2	novel	2862	5	NA	NA	42	1	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	21.0902821223425	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTGTAGATGTCTAAG	NA	False	NA	NA	False	AATAAA	-17	NA	72193014	72180836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72183280_72185114_72185281_72186572_72186670_72186962_72187031_72187382_72187487_72192347
ENSMUSG00000071745.2_2	chrX	-	3429	5	NNC	ENSMUSG00000071745.2	novel	2862	5	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	17.5499287747842	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAGTGTAGATGTCTAA	NA	False	NA	NA	False	AATAAA	-16	NA	72193003	72180837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72183280_72185114_72185281_72186572_72186670_72186962_72187031_72192347
ENSMUSG00000071745.2_4	chrX	-	2615	2	ISM	ENSMUSG00000071745.2	ENSMUST00000080324.4	2862	5	7774	-5	7774	5	3prime_fragment	FALSE	canonical	3	53	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTAGATGTCTAAGACAG	NA	False	NA	NA	False	AATAAA	-21	NA	72185282	72180832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72183280_72185114
ENSMUSG00000071745.2_6	chrX	-	2821	5	FSM	ENSMUSG00000071745.2	ENSMUST00000080324.4	2862	5	42	-1	42	1	multi-exon	FALSE	canonical	3	17	junction_4	17.5499287747842	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTGTAGATGTCTAAG	NA	False	NA	NA	False	AATAAA	-17	NA	72193014	72180836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72183280_72185114_72185281_72186572_72186670_72186962_72187031_72192967
ENSMUSG00000071745.2_7	chrX	-	2946	6	NNC	ENSMUSG00000071745.2	novel	2862	5	NA	NA	22	2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	22.5122189044083	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGTGTAGATGTCTAAGA	NA	False	NA	NA	False	AATAAA	-18	NA	72193034	72180835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72183280_72185114_72185281_72186572_72186670_72186962_72187031_72187382_72187487_72192967
ENSMUSG00000071745.2_9	chrX	-	1923	1	Genic_Genomic	ENSMUSG00000071745.2	novel	NA	NA	NA	NA	10297	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTGTAGATGTCTAAG	NA	False	NA	NA	False	AATAAA	-17	NA	72182759	72180836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_72180800_72182800
ENSMUSG00000071748.3_0	chrX	+	1936	1	FSM	ENSMUSG00000071748.3	ENSMUST00000096420.3	4226	1	15	2275	15	-2275	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTATTTGGAATGAGACA	NA	False	NA	NA	False	ATTAAA	-20	NA	67864713	67866649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_67864700_67866600
ENSMUSG00000071757.11_1	chr15	+	4352	4	FSM	ENSMUSG00000071757.11	ENSMUST00000096430.11	4376	4	12	12	12	-12	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAACCTTCCCTCTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	57558072	57703216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_57558401_57626041_57626116_57684427_57687148_57701986
ENSMUSG00000071757.11_2	chr15	+	2557	2	ISM	ENSMUSG00000071757.11	ENSMUST00000096430.11	4376	4	127769	3	126705	-3	3prime_fragment	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTCTGCTCCCTGTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	57685829	57703225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_57687148_57701986
ENSMUSG00000071767.5_1	chrX	+	1648	4	NIC	ENSMUSG00000071767.5	novel	409	3	NA	NA	-24	-2	intron_retention	FALSE	canonical	0	0	junction_2	2.82842712474619	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCCTCAGGTGTCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	36926704	36930150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_36926871_36927028_36928246_36928868_36928915_36929931
ENSMUSG00000071773.5_0	chrX	-	735	3	ISM	ENSMUSG00000071773.5	ENSMUST00000115210.2	883	5	4178	-17	4178	17	3prime_fragment	FALSE	canonical	3	117	junction_2	2	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTATTCATGTGTCTTCT	NA	False	NA	-6	True	AATAAA	-18	NA	36481733	36477439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_36477701_36479202_36479249_36481305
ENSMUSG00000071773.5_1	chrX	-	790	4	ISM	ENSMUSG00000071773.5	ENSMUST00000115210.2	883	5	3956	-13	3956	13	3prime_fragment	FALSE	canonical	3	106	junction_3	6.34209919681348	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATGTTTATTCATGTGTC	NA	False	NA	-10	True	AATAAA	-14	NA	36481955	36477443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_36477701_36479202_36479249_36481305_36481649_36481811
ENSMUSG00000071793.13_1	chr8	+	4045	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-13	-775	multi-exon	FALSE	canonical	3	906	junction_2	214.058403245469	874	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATAAATATAAATAGGT	NA	False	NA	NA	False	AATAAA	-7	NA	19834748	20045113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071793.13_116	chr8	+	4293	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	24	10385	24	-775	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	354	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATAAATATAAATAGGT	NA	False	NA	NA	False	AATAAA	-7	NA	20016489	20045113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071793.13_117	chr8	+	4123	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	27	-775	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	345	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATAAATATAAATAGGT	NA	False	NA	NA	False	AATAAA	-7	NA	20016492	20045113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071793.13_4	chr8	+	4212	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-13	-775	multi-exon	FALSE	canonical	3	606	junction_2	335.627770007191	595	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATAAATATAAATAGGT	NA	False	NA	NA	False	AATAAA	-7	NA	19834748	20045113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr8_+_19834867_20030550_20030924_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071796.14_15	chr8	+	4264	5	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	-10	-581	at_least_one_novel_splicesite	FALSE	canonical	3	474	junction_1	363.919891597038	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATAGGTGTGGCACC	7178	False	NA	NA	False	AATAAA	-15	NA	20143837	20172413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_20143957_20157802_20158176_20163109_20163409_20167037_20167158_20169060
ENSMUSG00000071796.14_16	chr8	+	4093	5	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	-8	-583	at_least_one_novel_splicesite	FALSE	canonical	3	474	junction_1	337.871647227168	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATAAATAGGTGTGGCA	7180	False	NA	NA	False	AATAAA	-13	NA	20143839	20172411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_20143957_20157802_20158009_20163109_20163409_20167037_20167158_20169060
ENSMUSG00000071796.14_17	chr8	+	4197	6	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	-8	-585	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	522.903203279536	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATATAAATAGGTGTGG	7180	False	NA	NA	False	AATAAA	-11	NA	20143839	20172409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_20144003_20152180_20152241_20157802_20158009_20163109_20163409_20167037_20167158_20169060
ENSMUSG00000071796.14_38	chr8	+	2492	1	ISM	ENSMUSG00000071796.14	ENSMUST00000153748.2	4659	5	26297	358	12131	-358	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTCTGTGGCTGCTTTT	NA	False	NA	NA	False	AATAAA	-40	NA	20170144	20172636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_20170100_20172600
ENSMUSG00000071815.7_0	chrX	+	429	1	FSM	ENSMUSG00000071815.7	ENSMUST00000096509.7	841	1	400	12	400	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAAAATTGAAGTATCAAG	7082	False	NA	19	True	AATAAA	-19	NA	8900131	8900560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_8900100_8900600
ENSMUSG00000071847.14_0	chr18	+	3431	5	FSM	ENSMUSG00000071847.14	ENSMUST00000236135.2	10879	5	72	7376	-26	1339	multi-exon	FALSE	canonical	3	18	junction_2	2.8613807855649	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCACGAAATACGTCTT	NA	False	NA	7	True	AATAAA	-17	NA	63055373	63086874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_63055793_63066945_63067130_63069976_63070509_63082945_63083268_63084900
ENSMUSG00000071847.14_3	chr18	+	1837	3	ISM	ENSMUSG00000071847.14	ENSMUST00000236135.2	10879	5	23	23089	23	2392	5prime_fragment	FALSE	canonical	3	18	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGAGTTATGTTCTGGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	63055324	63071161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_63055793_63066945_63067130_63069976
ENSMUSG00000071847.14_4	chr18	+	2959	4	ISM	ENSMUSG00000071847.14	ENSMUST00000096554.12	1842	6	11599	-1339	418	1339	3prime_fragment	FALSE	canonical	3	18	junction_1	3.09120616516523	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCACGAAATACGTCTT	NA	False	NA	7	True	AATAAA	-17	NA	63066998	63086874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_63067130_63069976_63070509_63082945_63083268_63084900
ENSMUSG00000071847.14_5	chr18	+	2552	3	ISM	ENSMUSG00000071847.14	ENSMUST00000096554.12	1842	6	14852	-1338	3671	1338	3prime_fragment	FALSE	canonical	3	19	junction_1	3	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCCCACGAAATACGTCT	NA	False	NA	6	True	AATAAA	-16	NA	63070251	63086873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_63070509_63082945_63083268_63084900
ENSMUSG00000071847.14_7	chr18	+	1314	1	ISM	ENSMUSG00000071847.14	ENSMUST00000236135.2	10879	5	30259	7376	18980	1339	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCACGAAATACGTCTT	NA	False	NA	7	True	AATAAA	-17	NA	63085560	63086874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_63085600_63086900
ENSMUSG00000071847.14_8	chr18	+	2188	2	ISM	ENSMUSG00000071847.14	ENSMUST00000096554.12	1842	6	27650	-1335	16469	1335	3prime_fragment	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAACCCCACGAAATACG	NA	False	NA	3	True	AATAAA	-13	NA	63083049	63086870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_63083268_63084900
ENSMUSG00000071855.6_0	chr18	-	2304	10	FSM	ENSMUSG00000071855.6	ENSMUST00000072835.7	2801	10	29	468	-8	-468	multi-exon	FALSE	canonical	3	48	junction_3	12.4909844030815	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTATTGGCTGGCACCAT	2742	False	NA	-6	True	TATAAA	-17	NA	46444966	46415685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_46416354_46416743_46416863_46418679_46418776_46420416_46420831_46423818_46424210_46424590_46424667_46426470_46426561_46429335_46429458_46432340_46432463_46444760
ENSMUSG00000071855.6_13	chr18	-	1287	4	ISM	ENSMUSG00000071855.6	ENSMUST00000072835.7	2801	10	24180	463	3102	-463	3prime_fragment	FALSE	canonical	3	48	junction_3	14.6590889515307	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGCTGGCACCATTTTCT	NA	False	NA	-1	True	TATAAA	-22	NA	46420815	46415680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_46416354_46416743_46416863_46418679_46418776_46420416
ENSMUSG00000071855.6_2	chr18	-	1479	5	ISM	ENSMUSG00000071855.6	ENSMUST00000072835.7	2801	10	21000	463	-78	-463	3prime_fragment	FALSE	canonical	3	48	junction_3	12.794041581924	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGCTGGCACCATTTTCT	NA	False	NA	-1	True	TATAAA	-22	NA	46423995	46415680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_46416354_46416743_46416863_46418679_46418776_46420416_46420831_46423818
ENSMUSG00000071855.6_5	chr18	-	2050	9	NIC	ENSMUSG00000071855.6	novel	2801	10	NA	NA	5	394	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	22.4468121344658	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAGACTATTTTAAATAA	2755	False	NA	-3	True	ATTAAA	-17	NA	46444953	46415830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_46416354_46416743_46416863_46420416_46420831_46423818_46424210_46424590_46424667_46426470_46426561_46429335_46429458_46432340_46432463_46444760
ENSMUSG00000071856.11_1	chr18	-	5181	17	FSM	ENSMUSG00000071856.11	ENSMUST00000164666.6	3606	17	-18	-1557	0	1557	multi-exon	FALSE	canonical	1	3	junction_7	2.40361056537868	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGCCTAGGTAATTTTCC	NA	False	NA	NA	False	ATTAAA	-12	NA	44795351	44560789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_44563135_44564402_44564526_44575978_44576077_44578796_44579004_44582271_44582507_44592865_44593050_44596904_44597009_44601447_44601589_44606690_44606840_44608200_44608291_44609298_44609446_44624190_44624398_44626448_44626613_44643163_44643307_44652583_44652727_44667253_44667368_44794764
ENSMUSG00000071856.11_2	chr18	-	2829	1	ISM	ENSMUSG00000071856.11	ENSMUST00000089874.9	7858	19	384293	1	91627	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTATTTGGATTTAAT	NA	False	NA	NA	False	AATAAA	-14	NA	44560956	44558127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_44558100_44561000
ENSMUSG00000071862.4_0	chr18	-	11509	1	FSM	ENSMUSG00000071862.4	ENSMUST00000236530.2	2872	1	-1205	-7432	-1189	4298	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35349266	35337757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35337800_35349300
ENSMUSG00000071866.13_0	chr11	+	727	5	FSM	ENSMUSG00000071866.13	ENSMUST00000132846.2	1170	5	426	17	1	-4	multi-exon	FALSE	canonical	3	36680	junction_4	732.852474922477	5264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAATAAGAACTGTTTGT	NA	False	NA	-15	True	AATAAA	-2	NA	6365868	6369800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477
ENSMUSG00000071984.12_0	chr17	-	3486	13	ISM	ENSMUSG00000071984.12	ENSMUST00000097425.10	5845	20	33362	-891	-3937	891	3prime_fragment	FALSE	canonical	0	0	junction_2	1.70579079087156	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAAGTGTCAGTCTCAGT	NA	False	NA	NA	False	AATAAA	-17	NA	7990444	7956509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_7958163_7959499_7959623_7960453_7960616_7961724_7961755_7965396_7965477_7969175_7969285_7972351_7972583_7975089_7975234_7977293_7977363_7983789_7984240_7985219_7985332_7988487_7988589_7990222
ENSMUSG00000072066.8_0	chr13	-	1755	1	ISM	ENSMUSG00000072066.8	ENSMUST00000201563.4	2640	3	19413	2	2730	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTGGCTAATATCTGTC	8117	False	NA	NA	False	NA	NA	NA	62752583	62750828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_62750800_62752600
ENSMUSG00000072066.8_1	chr13	-	2198	4	FSM	ENSMUSG00000072066.8	ENSMUST00000223338.2	1457	4	28	-769	28	-473	multi-exon	FALSE	canonical	3	9	junction_3	3.74165738677394	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGATCGGTTAAAGTTTG	NA	False	NA	NA	False	AATAAA	-13	NA	62771966	62751299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62753195_62754939_62755001_62755186_62755314_62771851
ENSMUSG00000072066.8_2	chr13	-	2308	5	NNC	ENSMUSG00000072066.8	novel	1457	4	NA	NA	40	-469	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	7.79422863405995	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGGTTAAAGTTTGCATG	NA	False	NA	NA	False	AATAAA	-17	NA	62771954	62751295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_62753195_62754939_62755001_62755186_62755314_62770760_62770879_62771851
ENSMUSG00000072066.8_4	chr13	-	2141	3	FSM	ENSMUSG00000072066.8	ENSMUST00000201563.4	2640	3	30	469	28	-469	multi-exon	FALSE	canonical	3	9	junction_2	2	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGGTTAAAGTTTGCATG	NA	False	NA	NA	False	AATAAA	-17	NA	62771966	62751295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62753195_62755186_62755314_62771851
ENSMUSG00000072082.8_1	chr17	-	3128	17	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-7	-1035	combination_of_known_junctions	FALSE	canonical	3	43	junction_16	200.408917902872	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATTACTGTGCTTCAAC	8759	False	NA	-7	True	AATAAA	-16	NA	24470299	24442206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470154
ENSMUSG00000072082.8_2	chr17	-	3047	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	51	1035	-11	-1035	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	1452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATTACTGTGCTTCAAC	8726	False	NA	-7	True	AATAAA	-16	NA	24470332	24442206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
ENSMUSG00000072082.8_21	chr17	-	2983	16	ISM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	2003	1036	166	-1036	3prime_fragment	FALSE	canonical	3	709	junction_2	69.1180632444708	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATATTACTGTGCTTCAA	9236	False	NA	-8	True	AATAAA	-15	NA	24468380	24442207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224
ENSMUSG00000072214.8_1	chr16	-	2123	12	FSM	ENSMUSG00000072214.8	ENSMUST00000096987.7	2143	12	20	0	5	0	multi-exon	FALSE	canonical	0	0	junction_5	0.98752549920002	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCGAGTGTCCGAGTGTT	NA	False	NA	-2	True	NA	NA	NA	18448684	18440560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18441547_18441664_18441768_18441854_18441991_18442070_18442168_18442860_18442963_18443096_18443215_18443332_18443468_18443558_18443683_18443918_18444006_18444094_18444192_18448400_18448412_18448557
ENSMUSG00000072235.7_0	chr15	-	1645	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	154	4	154	-4	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	1564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTCTTGTGTTCTA	NA	False	NA	-8	True	AATAAA	-15	NA	98851430	98847721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
ENSMUSG00000072235.7_3	chr15	-	697	1	ISM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	3166	4	3166	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTCTTGTGTTCTA	NA	False	NA	-8	True	AATAAA	-15	NA	98848418	98847721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_98847700_98848400
ENSMUSG00000072244.12_0	chr7	+	3555	8	FSM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	23	249	-19	-249	multi-exon	FALSE	canonical	2	421	junction_3	109.572825470701	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGGAGTCTTCTTACTC	NA	False	NA	12	True	AATAAA	-13	NA	103868024	103884110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
ENSMUSG00000072244.12_1	chr7	+	3509	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-19	-249	intron_retention	TRUE	canonical	0	0	junction_8	239.859203492382	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGGAGTCTTCTTACTC	NA	False	NA	12	True	AATAAA	-13	NA	103868024	103884110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
ENSMUSG00000072244.12_111	chr7	+	1727	1	ISM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	14382	249	7670	-249	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGGAGTCTTCTTACTC	NA	False	NA	12	True	AATAAA	-13	NA	103882383	103884110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_103882400_103884100
ENSMUSG00000072244.12_71	chr7	+	3616	8	NIC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	-18	-249	intron_retention	FALSE	canonical	2	115	junction_1	215.402423574185	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGGAGTCTTCTTACTC	NA	False	NA	12	True	AATAAA	-13	NA	103868617	103884110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_103868745_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
ENSMUSG00000072244.12_72	chr7	+	3568	9	NNC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	-18	-251	intron_retention	FALSE	canonical	0	0	junction_8	276.31221018985	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGATGGAGTCTTCTTAC	NA	False	NA	10	True	AATAAA	-11	NA	103868617	103884108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_103868745_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
ENSMUSG00000072249.4_2	chrX	+	838	1	FSM	ENSMUSG00000072249.4	ENSMUST00000097029.4	847	1	-1	10	-1	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAATTGAAGTATCAAATT	NA	False	NA	20	True	AATAAA	-20	NA	8929252	8930090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_8929300_8930100
ENSMUSG00000072258.12_0	chr1	+	2378	11	FSM	ENSMUSG00000072258.12	ENSMUST00000192076.3	2384	11	2	4	2	-4	multi-exon	FALSE	canonical	3	59	junction_7	9.96042167782067	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTTTTAGTAGTATTTT	NA	False	NA	12	True	AATAAA	-23	NA	183170326	183191016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
ENSMUSG00000072258.12_1	chr1	+	2278	11	NNC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	22.8624145706441	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTAGTAGTATTTTAT	NA	False	NA	14	True	AATAAA	-25	NA	183170321	183191018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_183170431_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189544_183190053
ENSMUSG00000072258.12_11	chr1	+	2292	11	NNC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	11	-13	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	14.0996453856117	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGTGATAATTTTTAG	NA	False	NA	3	True	AATAAA	-14	NA	183170335	183191007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_183170431_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
ENSMUSG00000072258.12_15	chr1	+	2958	10	NIC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	5	-2	intron_retention	FALSE	canonical	3	59	junction_7	10.3899286467209	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTAGTAGTATTTTAT	NA	False	NA	14	True	AATAAA	-25	NA	183170329	183191018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187850_183189427_183189583_183190053
ENSMUSG00000072258.12_18	chr1	+	2305	10	NIC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	10	-2	combination_of_known_splicesites	FALSE	canonical	3	6	junction_7	23.4020153189347	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTAGTAGTATTTTAT	NA	False	NA	14	True	AATAAA	-25	NA	183170334	183191018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187725_183187850_183189427_183189583_183190053
ENSMUSG00000072258.12_24	chr1	+	1974	3	NIC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	16667	-6	intron_retention	FALSE	canonical	3	59	junction_2	10	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATTTTTAGTAGTATT	NA	False	NA	10	True	AATAAA	-21	NA	183186991	183191014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_183187850_183189427_183189583_183190053
ENSMUSG00000072258.12_4	chr1	+	4395	9	NIC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	4	-4	intron_retention	FALSE	canonical	3	59	junction_8	9.73396116696589	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTTTTAGTAGTATTTT	NA	False	NA	12	True	AATAAA	-23	NA	183170328	183191016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183187850_183189427_183189583_183190053
ENSMUSG00000072294.6_0	chr14	-	1491	1	Genic_Genomic	ENSMUSG00000072294.6	novel	NA	NA	NA	NA	28434	165	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTCATGTCTTTTTC	413	False	NA	NA	False	AATGAA	-12	NA	100109393	100107902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_-_100107900_100109400
ENSMUSG00000072294.6_2	chr14	-	5963	8	NIC	ENSMUSG00000072294.6	novel	5890	8	NA	NA	15	9	combination_of_known_junctions	FALSE	canonical	2	16	junction_7	8.72481799120141	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATATGCCTTGTGTATGG	NA	False	NA	NA	False	AATAAA	-20	NA	100521905	100108058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_100112751_100137517_100137676_100179469_100179533_100224866_100225003_100260057_100260605_100347206_100347297_100387167_100387232_100521692
ENSMUSG00000072294.6_3	chr14	-	1571	7	NNC	ENSMUSG00000072294.6	novel	719	4	NA	NA	48	-40922	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	9.3571125650788	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGATCAGTTTGCCTCC	NA	False	NA	NA	False	AATAAA	-18	NA	100521872	100178558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_100179050_100179469_100179533_100224866_100225003_100260057_100260605_100347206_100347297_100387167_100387232_100521692
ENSMUSG00000072295.8_1	chr1	-	1898	13	FSM	ENSMUSG00000072295.8	ENSMUST00000097080.4	2131	13	7	226	0	-226	multi-exon	FALSE	canonical	1	1	junction_7	3.19722101554181	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTAGAAACGTGTCTA	NA	False	NA	NA	False	AATAAA	-21	NA	59134052	59089890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_59090445_59091654_59091693_59097814_59097879_59099730_59099837_59101554_59101690_59105308_59105389_59106935_59107005_59107841_59107887_59108875_59109002_59114155_59114302_59115829_59115882_59117041_59117129_59133656
ENSMUSG00000072381.4_0	chr3	-	749	1	FSM	ENSMUSG00000072381.4	ENSMUST00000097146.4	517	1	-103	-129	-103	129	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	101214498	101213749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_101213700_101214500
ENSMUSG00000072419.6_0	chr16	+	2262	8	FSM	ENSMUSG00000072419.6	ENSMUST00000232448.2	2447	8	-36	221	-36	-221	multi-exon	FALSE	canonical	3	19	junction_1	195.358069989965	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACATATGGATATCTGGT	NA	False	NA	7	True	NA	NA	NA	48124234	48139865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_48124570_48130639_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
ENSMUSG00000072419.6_6	chr16	+	1726	7	FSM	ENSMUSG00000072419.6	ENSMUST00000097175.5	1948	7	1	221	1	-221	multi-exon	FALSE	canonical	3	478	junction_4	51.0968579160098	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACATATGGATATCTGGT	NA	False	NA	7	True	NA	NA	NA	48130840	48139865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
ENSMUSG00000072419.6_7	chr16	+	1656	8	NNC	ENSMUSG00000072419.6	novel	2447	8	NA	NA	1	-221	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	201.815231722242	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACATATGGATATCTGGT	NA	False	NA	7	True	NA	NA	NA	48130840	48139865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995_48139290_48139359
ENSMUSG00000072437.5_0	chr19	+	3246	1	FSM	ENSMUSG00000072437.5	ENSMUST00000088237.6	3928	1	125	557	125	-557	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60744549	60747795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_60744500_60747800
ENSMUSG00000072476.7_0	chr6	-	844	1	FSM	ENSMUSG00000072476.7	ENSMUST00000097218.7	2353	1	1470	39	1470	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	76473297	76472453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_76472500_76473300
ENSMUSG00000072479.11_0	chrX	+	1110	9	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	-10	304	at_least_one_novel_splicesite	TRUE	canonical	3	104	junction_1	165.884749148317	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTGCATGCTTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	72192391	72202003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_72192426_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
ENSMUSG00000072479.11_19	chrX	+	980	7	NIC	ENSMUSG00000072479.11	novel	864	8	NA	NA	91	306	combination_of_known_splicesites	FALSE	canonical	3	121	junction_6	163.137382458943	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72194830	72202005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
ENSMUSG00000072479.11_2	chrX	+	1049	8	NIC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	31	306	combination_of_known_splicesites	FALSE	canonical	3	121	junction_7	152.49623615295	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192432	72202005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
ENSMUSG00000072479.11_3	chrX	+	1150	9	FSM	ENSMUSG00000072479.11	ENSMUST00000114518.9	1652	9	27	475	27	304	multi-exon	FALSE	canonical	3	121	junction_8	146.338167868127	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTGCATGCTTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	72192428	72202003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
ENSMUSG00000072494.8_0	chr14	-	3722	2	FSM	ENSMUSG00000072494.8	ENSMUST00000168622.2	1852	2	406	-2276	406	-640	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCTACCATTTACCATAG	2373	False	NA	NA	False	ATTAAA	-12	NA	55114589	55110777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55114254_55114343
ENSMUSG00000072501.6_0	chr15	+	3249	9	ISM	ENSMUSG00000072501.6	ENSMUST00000229576.2	5094	22	-7	31949	7	-4	5prime_fragment	FALSE	canonical	3	13	junction_7	18.8878267675241	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTAATGGCTCTAATTA	3843	False	NA	NA	False	AATAAA	-12	NA	66449421	66483461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_66449697_66451917_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66469525_66469604_66475875_66476090_66476625_66476755_66481374
ENSMUSG00000072501.6_16	chr15	+	3256	9	NIC	ENSMUSG00000072501.6	novel	3263	9	NA	NA	-6	-5	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	16.7928556237467	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAGTAATGGCTCTAATT	3844	False	NA	NA	False	AATAAA	-11	NA	66449422	66483460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_66449697_66451917_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66469513_66469604_66475875_66476090_66476628_66476755_66481374
ENSMUSG00000072501.6_18	chr15	+	3163	8	NIC	ENSMUSG00000072501.6	novel	3203	13	NA	NA	-6	-4	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	21.0558053461631	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTAATGGCTCTAATTA	3844	False	NA	NA	False	AATAAA	-12	NA	66449422	66483461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_66449697_66451921_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66475875_66476090_66476628_66476755_66481374
ENSMUSG00000072501.6_2	chr15	+	3234	9	FSM	ENSMUSG00000072501.6	ENSMUST00000230882.2	3263	9	25	4	5	-4	multi-exon	FALSE	canonical	3	27	junction_5	13.8834433769148	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTAATGGCTCTAATTA	3855	False	NA	NA	False	AATAAA	-12	NA	66449433	66483461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_66449697_66451917_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66469525_66469604_66475875_66476090_66476628_66476755_66481374
ENSMUSG00000072501.6_28	chr15	+	3011	1	ISM	ENSMUSG00000072501.6	ENSMUST00000048188.10	6665	21	64482	183	11174	-183	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCACTGTCTTGGTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	66513910	66516921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_66513900_66516900
ENSMUSG00000072501.6_3	chr15	+	3273	9	NIC	ENSMUSG00000072501.6	novel	6665	21	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	13	junction_7	20.8326666559997	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTAATGGCTCTAATTA	3831	False	NA	NA	False	AATAAA	-12	NA	66449409	66483461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_66449697_66451917_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66469513_66469604_66475875_66476090_66476625_66476755_66481374
ENSMUSG00000072501.6_5	chr15	+	3234	9	NIC	ENSMUSG00000072501.6	novel	3263	9	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	18.1916876622264	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAATGGCTCTAATTACT	3853	False	NA	NA	False	AATAAA	-14	NA	66449431	66483463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_66449697_66451921_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66469525_66469604_66475875_66476090_66476628_66476755_66481374
ENSMUSG00000072501.6_7	chr15	+	3165	8	ISM	ENSMUSG00000072501.6	ENSMUST00000230948.2	6584	20	-8	33647	6	-8	5prime_fragment	FALSE	canonical	3	18	junction_5	17.128565471225	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACAAGTAATGGCTCTA	3842	False	NA	NA	False	AATAAA	-8	NA	66449420	66483457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_66449697_66451917_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66475875_66476090_66476628_66476755_66481374
ENSMUSG00000072568.5_0	chr15	-	5110	2	FSM	ENSMUSG00000072568.5	ENSMUST00000100635.5	5565	2	131	324	131	-324	multi-exon	FALSE	canonical	3	40	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCGCTTCCTCTTTACTC	NA	False	NA	-3	True	AATAAA	-19	NA	60696798	60691166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_60695841_60696362
ENSMUSG00000072568.5_1	chr15	-	3338	1	ISM	ENSMUSG00000072568.5	ENSMUST00000100635.5	5565	2	2425	324	2425	-324	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCGCTTCCTCTTTACTC	NA	False	NA	-3	True	AATAAA	-19	NA	60694504	60691166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_60691200_60694500
ENSMUSG00000072571.4_1	chr14	+	1254	7	FSM	ENSMUSG00000072571.4	ENSMUST00000100638.4	1234	7	-25	5	-25	-5	multi-exon	TRUE	canonical	3	12	junction_4	6.83130051063973	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTGAGTGACGCCAGG	NA	False	NA	18	True	AATAAA	-32	NA	52254296	52257246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_52254399_52254512_52254655_52255207_52255319_52255410_52255468_52255998_52256110_52256188_52256336_52256662
ENSMUSG00000072571.4_5	chr14	+	878	3	ISM	ENSMUSG00000072571.4	ENSMUST00000100638.4	1234	7	1625	21	1571	-21	3prime_fragment	FALSE	canonical	3	19	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGGGGCGCTGTGCATCT	NA	False	NA	2	True	AATAAA	-16	NA	52255946	52257230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_52256110_52256188_52256336_52256662
ENSMUSG00000072571.4_6	chr14	+	1165	2	ISM	ENSMUSG00000072571.4	ENSMUST00000227295.2	704	6	1350	-410	1350	-34	3prime_fragment	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTCCCTCGGCGGCGGGG	NA	False	NA	-11	True	AATAAA	-3	NA	52255725	52257217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_52256336_52256662
ENSMUSG00000072572.10_0	chr14	+	1365	4	FSM	ENSMUSG00000072572.10	ENSMUST00000047726.12	2334	4	28	941	28	-2	multi-exon	FALSE	canonical	3	11	junction_3	1.24721912892465	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACCTCATTGCAATTCTG	NA	False	NA	12	True	AATAAA	-23	NA	52131094	52133261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_52131372_52131545_52131677_52131912_52131964_52132355
ENSMUSG00000072582.10_1	chr11	+	691	2	FSM	ENSMUSG00000072582.10	ENSMUST00000108022.8	3038	2	76	2271	76	-2271	multi-exon	FALSE	canonical	3	249	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGTCTGTTCCCATGTTC	NA	False	NA	15	True	AATAAA	-22	NA	86574886	86581012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_86574950_86580384
ENSMUSG00000072582.10_3	chr11	+	2260	1	ISM	ENSMUSG00000072582.10	ENSMUST00000108022.8	3038	2	6047	166	6047	-166	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAATGATTAAAAA	1692	False	NA	-14	True	NA	NA	NA	86580857	86583117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_86580900_86583100
ENSMUSG00000072591.11_0	chr5	-	435	3	NIC	ENSMUSG00000072591.11	novel	2429	6	NA	NA	6334	7	intron_retention	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTCCAGATGTGTGTG	NA	False	NA	NA	False	AATAAA	-43	NA	128671384	128656162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_128656350_128662335_128662471_128671271
ENSMUSG00000072623.7_0	chr6	-	3938	6	FSM	ENSMUSG00000072623.7	ENSMUST00000161170.2	3968	6	19	11	19	-11	multi-exon	FALSE	canonical	1	1	junction_2	1.01980390271856	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAATCTTTCCCCATGAT	NA	False	NA	NA	False	AATAAA	-45	NA	118456262	118438921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_118442362_118442795_118442860_118443788_118443882_118444199_118444327_118454267_118454386_118456166
ENSMUSG00000072640.12_0	chr11	+	525	4	FSM	ENSMUSG00000072640.12	ENSMUST00000147875.9	8035	4	12	7498	-8	97	multi-exon	FALSE	canonical	3	164	junction_1	44.0782133132559	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTTTTGCTTCTTCTCT	NA	False	NA	19	True	NA	NA	NA	78717421	78730198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_78717463_78726843_78726985_78728915_78729009_78729948
ENSMUSG00000072640.12_3	chr11	+	4206	4	NIC	ENSMUSG00000072640.12	novel	8035	4	NA	NA	-8	3667	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	93.9834500797289	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTATATAGCATGCTT	NA	False	NA	NA	False	CATAAA	-5	NA	78717421	78733768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_78717463_78726843_78726985_78728915_78729120_78729948
ENSMUSG00000072640.12_4	chr11	+	478	3	ISM	ENSMUSG00000072640.12	ENSMUST00000147875.9	8035	4	9433	7505	9388	90	3prime_fragment	FALSE	canonical	3	230	junction_1	20.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGGAGTTTTTTTGCTT	NA	False	NA	12	True	NA	NA	NA	78726842	78730191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78726985_78728915_78729009_78729948
ENSMUSG00000072640.12_5	chr11	+	258	1	ISM	ENSMUSG00000072640.12	ENSMUST00000147875.9	8035	4	12539	7490	12494	105	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTTCTCTGTGTTTCT	NA	False	NA	27	True	NA	NA	NA	78729948	78730206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78729900_78730200
ENSMUSG00000072640.12_6	chr11	+	1713	1	ISM	ENSMUSG00000072640.12	ENSMUST00000147875.9	8035	4	15595	2979	15550	-2979	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATTTAGCCTTGGGTA	NA	False	NA	NA	False	AATAAA	-14	NA	78733004	78734717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_78733000_78734700
ENSMUSG00000072663.13_0	chr15	-	1512	9	FSM	ENSMUSG00000072663.13	ENSMUST00000159368.2	1422	9	-89	-1	2	1	multi-exon	FALSE	canonical	2	4	junction_2	3.23795846174715	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTGGCATTTTATTTA	NA	False	NA	NA	False	AATAAA	-18	NA	9748952	9704396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_9704628_9713186_9713375_9716417_9716607_9717536_9717724_9723679_9723745_9725200_9725342_9729702_9729956_9740597_9740701_9748797
ENSMUSG00000072676.13_0	chr14	-	1223	4	FSM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	57	867	28	3	multi-exon	FALSE	canonical	3	137	junction_1	7.40870359029762	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCTTGATCGTGATGT	NA	False	NA	-10	True	NA	NA	NA	25928039	25924590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927721
ENSMUSG00000072676.13_1	chr14	-	1273	4	FSM	ENSMUSG00000072676.13	ENSMUST00000100811.6	1108	4	1	-166	1	166	multi-exon	FALSE	canonical	3	8	junction_3	63.5627424063989	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCAGTTCCACATGCAT	NA	False	NA	-12	True	AGTAAA	-11	NA	25927673	25924427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927468
ENSMUSG00000072692.8_0	chr5	-	358	1	FSM	ENSMUSG00000072692.8	ENSMUST00000124641.2	294	1	-27	-37	-27	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1848	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATTAATC	NA	False	NA	-15	True	AATAAA	-13	NA	115241607	115241249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115241200_115241600
ENSMUSG00000072694.9_0	chr5	-	1275	2	FSM	ENSMUSG00000072694.9	ENSMUST00000112160.4	1333	2	50	8	19	-8	multi-exon	FALSE	canonical	3	46	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGAGATCCTGTCTGCTG	769	False	NA	-8	True	ATTAAA	-15	NA	114951987	114946264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114947393_114951840
ENSMUSG00000072694.9_3	chr5	-	549	2	FSM	ENSMUSG00000072694.9	ENSMUST00000061251.6	579	2	25	5	25	-5	multi-exon	FALSE	canonical	3	102	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAATCCTGTTTTGGCGTC	775	False	NA	-8	True	NA	NA	NA	114951981	114950858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114951267_114951840
ENSMUSG00000072694.9_4	chr5	-	923	2	FSM	ENSMUSG00000072694.9	ENSMUST00000234046.2	947	2	19	5	-4	-5	multi-exon	FALSE	canonical	3	282	junction_1	0	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCGTTTCTTGTGG	9612	False	NA	-3	True	NA	NA	NA	114961510	114960000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_114960787_114961373
ENSMUSG00000072694.9_5	chr5	-	778	1	ISM	ENSMUSG00000072694.9	ENSMUST00000234046.2	947	2	754	2	731	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGACCGTTTCTTGTGGGTG	NA	False	NA	0	True	NA	NA	NA	114960775	114959997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_114960000_114960800
ENSMUSG00000072704.7_0	chr6	+	2451	1	FSM	ENSMUSG00000072704.7	ENSMUST00000100864.7	2842	1	379	12	-2	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGGAAATAATGTGTGTC	NA	False	NA	NA	False	AATAAA	-7	NA	133082250	133084701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_133082200_133084700
ENSMUSG00000072704.7_1	chr6	+	2385	2	NNC	ENSMUSG00000072704.7	novel	1181	2	NA	NA	6	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGGAAATAATGTGTGTC	NA	False	NA	NA	False	AATAAA	-7	NA	133082258	133084701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_133083297_133083354
ENSMUSG00000072704.7_2	chr6	+	1695	2	FSM	ENSMUSG00000072704.7	ENSMUST00000186945.3	1181	2	-205	-309	-3	-12	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGGAAATAATGTGTGTC	NA	False	NA	NA	False	AATAAA	-7	NA	133082249	133084701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_133082569_133083325
ENSMUSG00000072754.10_0	chr5	+	665	4	FSM	ENSMUSG00000072754.10	ENSMUST00000100924.5	692	4	26	1	26	-1	multi-exon	FALSE	canonical	3	17	junction_1	4.71404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGTCCAGTCCATGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	110501987	110503959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110502160_110502356_110502483_110502590_110502717_110503718
ENSMUSG00000072761.11_0	chr17	+	2225	4	FSM	ENSMUSG00000072761.11	ENSMUST00000186431.7	526	4	-15	-1684	-15	277	multi-exon	FALSE	canonical	3	37	junction_1	17.5689119374726	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGATATCCCCAAGTATG	NA	False	NA	15	True	NA	NA	NA	17514689	17540050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_17514852_17536339_17536467_17536705_17536767_17538175
ENSMUSG00000072761.11_3	chr17	+	3329	3	ISM	ENSMUSG00000072761.11	ENSMUST00000105311.4	447	4	-1268	-275	-1268	275	intron_retention	FALSE	canonical	3	57	junction_1	11.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGATATCCCCAAGTA	NA	False	NA	13	True	NA	NA	NA	17535071	17540048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_17536467_17536705_17536767_17538175
ENSMUSG00000072761.11_4	chr17	+	1941	3	NIC	ENSMUSG00000072761.11	novel	526	4	NA	NA	-17	118	intron_retention	FALSE	canonical	1	4	junction_1	38	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTCTAAGGGATGCAACA	NA	False	NA	NA	False	NA	NA	NA	17514687	17539891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_17514852_17536705_17536767_17538175
ENSMUSG00000072762.10_1	chr5	-	2584	4	FSM	ENSMUSG00000072762.10	ENSMUST00000112547.8	2001	4	-116	-467	-116	467	multi-exon	FALSE	canonical	3	85	junction_1	29.0631496343164	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACGAATTATAGCCATAT	7830	False	NA	NA	False	NA	NA	NA	109899579	109883388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_109885666_109886815_109886877_109887064_109887192_109899460
ENSMUSG00000072762.10_3	chr5	-	431	3	FSM	ENSMUSG00000072762.10	ENSMUST00000100937.4	599	3	176	-8	-113	8	multi-exon	FALSE	canonical	3	125	junction_2	15.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAATTCTCACAAATCCC	7833	False	NA	NA	False	NA	NA	NA	109899576	109886688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_109886877_109887064_109887192_109899460
ENSMUSG00000072763.3_1	chr5	-	3105	4	FSM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	231	5	231	-5	multi-exon	FALSE	canonical	3	41	junction_1	21.5148527508066	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTTGCCATGGTCATG	6362	False	NA	-8	True	NA	NA	NA	109838676	109822415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_109825258_109826379_109826441_109826628_109826756_109838601
ENSMUSG00000072763.3_2	chr5	-	420	3	ISM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	218	3825	218	-3825	5prime_fragment	FALSE	canonical	3	55	junction_1	18.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCAATGTCAGGTGTCTG	6349	False	NA	NA	False	NA	NA	NA	109838689	109826235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_109826441_109826628_109826756_109838601
ENSMUSG00000072763.3_3	chr5	-	2207	1	ISM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	14289	1	14289	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGCCATGGTCATGGTAT	NA	False	NA	-4	True	NA	NA	NA	109824618	109822411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_109822400_109824600
ENSMUSG00000072770.10_0	chr6	+	1842	9	NIC	ENSMUSG00000072770.10	novel	1883	10	NA	NA	-39	-8	combination_of_known_splicesites	FALSE	canonical	1	1	junction_8	47.7072780087064	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGCATCTCACGTGCTC	NA	False	NA	NA	False	AATAAA	-6	NA	125026870	125040222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452_125030916_125031635_125031769_125037772_125037953_125038048_125038217_125039898
ENSMUSG00000072770.10_1	chr6	+	1241	5	FSM	ENSMUSG00000072770.10	ENSMUST00000112414.8	1498	5	252	5	-6	-4	multi-exon	FALSE	canonical	3	86	junction_4	12.3490890352285	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCATCTTGTTGTCGTTGT	NA	False	NA	12	True	ACTAAA	-19	NA	125026903	125031152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452
ENSMUSG00000072770.10_2	chr6	+	1900	10	FSM	ENSMUSG00000072770.10	ENSMUST00000088294.12	1883	10	-18	1	-6	-1	multi-exon	FALSE	canonical	3	10	junction_9	45.7669890199324	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCACGTGCTCTGCTTAG	NA	False	NA	NA	False	AATAAA	-13	NA	125026903	125040229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452_125030916_125031635_125031769_125037772_125037953_125038048_125038217_125039398_125039483_125039898
ENSMUSG00000072770.10_3	chr6	+	3506	8	ISM	ENSMUSG00000072770.10	ENSMUST00000088294.12	1883	10	-28	3	-16	-3	intron_retention	FALSE	canonical	3	11	junction_5	45.4276729470898	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTCACGTGCTCTGCTT	NA	False	NA	NA	False	AATAAA	-11	NA	125026893	125040227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452_125030916_125031635_125031769_125037772_125037953_125038048
ENSMUSG00000072770.10_4	chr6	+	1122	4	NIC	ENSMUSG00000072770.10	novel	1498	5	NA	NA	-15	-14	combination_of_known_splicesites	FALSE	canonical	2	6	junction_3	51.6978400580398	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTGTTTCTCCATCTTG	NA	False	NA	2	True	ACTAAA	-9	NA	125026894	125031142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_125027016_125027396_125027613_125027809_125027905_125030452
ENSMUSG00000072772.4_0	chr6	-	532	3	FSM	ENSMUSG00000072772.4	ENSMUST00000004389.6	863	3	328	3	19	0	multi-exon	FALSE	canonical	3	807	junction_1	71.5	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTGTGTCAGTCATT	9271	False	NA	NA	False	AATAAA	-14	NA	124718009	124716148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_124716377_124717481_124717659_124717882
ENSMUSG00000072772.4_2	chr6	-	264	1	ISM	ENSMUSG00000072772.4	ENSMUST00000129823.2	510	2	1245	4	1245	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACCTTTGTGTCAGTCAT	8184	False	NA	NA	False	AATAAA	-13	NA	124716413	124716149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_124716100_124716400
ENSMUSG00000072774.11_14	chr5	-	2637	5	FSM	ENSMUSG00000072774.11	ENSMUST00000186219.7	2904	5	267	0	-10	0	multi-exon	FALSE	canonical	3	35	junction_4	90.557647385519	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGAGGAATTGTGCGTT	NA	False	NA	-9	True	NA	NA	NA	105007669	104961034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_104963302_104964564_104964626_104964862_104964990_104965173_104965219_105007532
ENSMUSG00000072774.11_8	chr5	-	2593	4	NIC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	-10	1	combination_of_known_splicesites	FALSE	canonical	3	193	junction_3	15.5134350376268	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGGAATTGTGCGTTT	NA	False	NA	-8	True	NA	NA	NA	105007669	104961033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_104963302_104964564_104964626_104964862_104964990_105007532
ENSMUSG00000072774.11_9	chr5	-	1710	1	Genic_Genomic	ENSMUSG00000072774.11	novel	NA	NA	NA	NA	14080	1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGGAATTGTGCGTTT	NA	False	NA	-8	True	NA	NA	NA	104962743	104961033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_-_104961000_104962700
ENSMUSG00000072825.12_2	chr12	+	6623	19	FSM	ENSMUSG00000072825.12	ENSMUST00000101018.11	6641	19	8	10	8	-5	multi-exon	FALSE	canonical	0	0	junction_4	23.8627764261712	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCAGTGACTGCCGCCTC	9021	False	NA	21	True	AATAAA	-21	NA	112688615	112713016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_112688817_112691057_112691190_112697784_112697875_112698438_112698518_112698933_112698993_112699825_112699965_112701594_112701700_112701785_112702260_112702589_112703303_112703591_112703766_112704007_112704099_112704272_112705944_112707207_112707446_112709386_112709547_112709836_112709981_112710103_112710193_112710503_112710598_112710956_112711009_112711098
ENSMUSG00000072825.12_22	chr12	+	5209	11	ISM	ENSMUSG00000072825.12	ENSMUST00000179041.8	6565	20	14097	5	-947	-5	3prime_fragment	FALSE	canonical	3	42	junction_4	16.5481116747501	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCAGTGACTGCCGCCTC	NA	False	NA	21	True	AATAAA	-21	NA	112702724	112713016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112703303_112703591_112703766_112704007_112704099_112704272_112705944_112707207_112707446_112709386_112709547_112709836_112709981_112710103_112710193_112710503_112710598_112710956_112711009_112711098
ENSMUSG00000072825.12_24	chr12	+	3708	8	ISM	ENSMUSG00000072825.12	ENSMUST00000092279.7	3817	17	16303	5	1259	-5	3prime_fragment	FALSE	canonical	3	42	junction_1	18.9542951892823	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCAGTGACTGCCGCCTC	NA	False	NA	21	True	AATAAA	-21	NA	112704930	112713016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112705944_112707207_112707446_112709386_112709547_112709836_112709981_112710103_112710193_112710503_112710598_112710956_112711009_112711098
ENSMUSG00000072825.12_31	chr12	+	1138	1	ISM	ENSMUSG00000072825.12	ENSMUST00000101018.11	6641	19	23271	10	1481	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCAGTGACTGCCGCCTC	NA	False	NA	21	True	AATAAA	-21	NA	112711878	112713016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_112711900_112713000
ENSMUSG00000072825.12_8	chr12	+	6516	19	NIC	ENSMUSG00000072825.12	novel	6641	19	NA	NA	-10	-5	intron_retention	FALSE	canonical	0	0	junction_4	27.3297761913022	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCAGTGACTGCCGCCTC	9023	False	NA	21	True	AATAAA	-21	NA	112688617	112713016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_112688817_112691057_112691190_112697784_112697875_112698438_112698518_112698933_112698993_112699825_112699965_112701594_112701700_112701785_112702260_112702589_112703303_112703591_112703766_112704007_112704099_112704272_112705944_112707312_112707446_112709386_112709547_112709836_112709981_112710103_112710193_112710503_112710598_112710956_112711009_112711098
ENSMUSG00000072872.4_1	chr6	-	2607	1	ISM	ENSMUSG00000072872.4	ENSMUST00000101118.4	4503	5	56306	8	1952	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTACATTGGAGATGA	NA	False	NA	NA	False	AATAAA	-6	NA	100208140	100205533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_100205500_100208100
ENSMUSG00000072872.4_2	chr6	-	4466	5	FSM	ENSMUSG00000072872.4	ENSMUST00000101118.4	4503	5	29	8	29	-8	multi-exon	FALSE	canonical	3	260	junction_4	17.7552809045647	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTACATTGGAGATGA	NA	False	NA	NA	False	AATAAA	-6	NA	100264417	100205533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_100209387_100209827_100209927_100210023_100210201_100263443_100263570_100264206
ENSMUSG00000072872.4_4	chr6	-	4257	4	ISM	ENSMUSG00000072872.4	ENSMUST00000101118.4	4503	5	875	8	138	-8	3prime_fragment	FALSE	canonical	3	293	junction_2	5.79271573232759	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTACATTGGAGATGA	NA	False	NA	NA	False	AATAAA	-6	NA	100263571	100205533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_100209387_100209827_100209927_100210023_100210201_100263443
ENSMUSG00000072875.3_0	chr6	+	2747	1	FSM	ENSMUSG00000072875.3	ENSMUST00000101122.3	2388	1	-361	2	-361	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGGCTGTTTTGTTTTTG	3406	False	NA	8	True	AATATA	-18	NA	99669278	99672025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_99669300_99672000
ENSMUSG00000072889.10_0	chr5	-	3689	23	FSM	ENSMUSG00000072889.10	ENSMUST00000087216.12	3712	23	15	8	15	-5	multi-exon	FALSE	canonical	3	106	junction_22	12.1822421907212	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACCAAATTTGTGATAAAG	NA	False	NA	NA	False	ATTAAA	-8	NA	72717012	72670651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_72671675_72673554_72673609_72674368_72674456_72675537_72675643_72679490_72679561_72680851_72681019_72681429_72681571_72681989_72682012_72685501_72685594_72686354_72686515_72686726_72686848_72690387_72690479_72694708_72694832_72695492_72695618_72696948_72697064_72697636_72697738_72697834_72697997_72698196_72698376_72707634_72707766_72709985_72710096_72713514_72713689_72716356_72716612_72716931
ENSMUSG00000072889.10_33	chr5	-	3574	22	ISM	ENSMUSG00000072889.10	ENSMUST00000087216.12	3712	23	450	8	178	-5	3prime_fragment	FALSE	canonical	3	109	junction_5	11.5489689932589	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACCAAATTTGTGATAAAG	NA	False	NA	NA	False	ATTAAA	-8	NA	72716577	72670651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_72671675_72673554_72673609_72674368_72674456_72675537_72675643_72679490_72679561_72680851_72681019_72681429_72681571_72681989_72682012_72685501_72685594_72686354_72686515_72686726_72686848_72690387_72690479_72694708_72694832_72695492_72695618_72696948_72697064_72697636_72697738_72697834_72697997_72698196_72698376_72707634_72707766_72709985_72710096_72713514_72713689_72716356
ENSMUSG00000072893.13_1	chr11	+	1902	4	FSM	ENSMUSG00000072893.13	ENSMUST00000137442.8	1414	4	-489	1	2	-1	multi-exon	FALSE	canonical	2	5	junction_3	2.94392028877595	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTTTCATTGTGCAGT	NA	False	NA	NA	False	AATAAA	-17	NA	59396489	59400928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59397713_59398016_59398139_59398656_59398765_59400479
ENSMUSG00000072893.13_6	chr11	+	3704	3	NIC	ENSMUSG00000072893.13	novel	1883	5	NA	NA	-13	-13	intron_retention	FALSE	canonical	2	5	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCCACCACACCTGGCT	NA	False	NA	NA	False	NA	NA	NA	59396909	59401886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_59397713_59398016_59400577_59401545
ENSMUSG00000072893.13_7	chr11	+	3872	3	ISM	ENSMUSG00000072893.13	ENSMUST00000145533.8	1883	5	692	3	224	-3	intron_retention	FALSE	canonical	3	10	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTGGCTCTATTGCATT	NA	False	NA	NA	False	NA	NA	NA	59397202	59401896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_59397713_59398016_59398139_59398656
ENSMUSG00000072893.13_8	chr11	+	3409	2	FSM	ENSMUSG00000072893.13	ENSMUST00000132226.2	3184	2	-277	52	238	0	multi-exon	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTCATTGTGCAGTT	NA	False	NA	NA	False	AATAAA	-18	NA	59397216	59400929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_59397713_59398016
ENSMUSG00000072893.13_9	chr11	+	2901	1	NIC	ENSMUSG00000072893.13	novel	2624	5	NA	NA	-439	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTTTCATTGTGCAGT	NA	False	NA	NA	False	AATAAA	-17	NA	59398027	59400928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_59398000_59400900
ENSMUSG00000072905.6_0	chr12	+	1835	2	FSM	ENSMUSG00000072905.6	ENSMUST00000110147.3	1766	2	5	-74	5	74	multi-exon	FALSE	canonical	2	7	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAAAGAAAAAGATCAAT	NA	False	NA	NA	False	AATAAA	-16	NA	87840846	87844703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_87841033_87843054
ENSMUSG00000072915.4_0	chr11	+	4078	5	FSM	ENSMUSG00000072915.4	ENSMUST00000139337.3	4100	5	16	6	16	-6	multi-exon	FALSE	canonical	2	9	junction_4	6.04152298679729	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACATCTCCGAGTGG	NA	False	NA	NA	False	AATAAA	-16	NA	58737999	58752776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58738086_58739471_58739529_58745085_58745213_58746886_58746980_58749061
ENSMUSG00000072915.4_5	chr11	+	3826	1	FSM	ENSMUSG00000072915.4	ENSMUST00000093768.4	2524	1	-1308	6	-1308	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACATCTCCGAGTGG	NA	False	NA	NA	False	AATAAA	-16	NA	58748950	58752776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58749000_58752800
ENSMUSG00000072919.5_0	chr12	-	733	4	NNC	ENSMUSG00000072919.5	novel	1101	6	NA	NA	8410	60	at_least_one_novel_splicesite	TRUE	canonical	3	41	junction_2	1.69967317119759	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTCAGTATTCTTGGGT	NA	False	NA	-10	True	AATAAA	-18	NA	87271920	87267968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_87268219_87269818_87270042_87270931_87271084_87271812
ENSMUSG00000072923.7_0	chrX	+	1991	7	FSM	ENSMUSG00000072923.7	ENSMUST00000101181.5	1977	7	-16	2	-16	-2	multi-exon	FALSE	canonical	0	0	junction_1	5.06622805119022	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTTTTTTTGTGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	148377549	148419758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_148377658_148394767_148394894_148395612_148395693_148399354_148400266_148411437_148411520_148412325_148412376_148419124
ENSMUSG00000072930.4_0	chrX	+	2043	7	FSM	ENSMUSG00000072930.4	ENSMUST00000112796.2	2028	7	-16	1	-16	-1	multi-exon	TRUE	canonical	0	0	junction_3	7.43303437365925	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTTGTTTGTGTGTGT	1193	False	NA	NA	False	AATAAA	-18	NA	146963703	147007705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_146963812_146980956_146981083_146981801_146981882_146985542_146986502_146999377_146999460_147000265_147000316_147007067
ENSMUSG00000072940.6_0	chr6	+	294	1	FSM	ENSMUSG00000072940.6	ENSMUST00000119024.2	210	1	-8	-76	-8	76	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATCAAGTAAATA	NA	False	NA	NA	False	AATAAA	-12	NA	86311004	86311298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86311000_86311300
ENSMUSG00000072944.12_1	chrX	-	1864	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-11	-9	combination_of_known_junctions	FALSE	canonical	3	238	junction_8	106.849119673491	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTTTAAGTGGCTGA	NA	False	NA	-18	True	AATAAA	-7	NA	138963340	138907562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963307
ENSMUSG00000072944.12_2	chrX	-	1985	9	FSM	ENSMUSG00000072944.12	ENSMUST00000101212.9	1996	9	2	9	2	-9	multi-exon	FALSE	canonical	3	147	junction_8	135.330151850946	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTTTAAGTGGCTGA	NA	False	NA	-18	True	AATAAA	-7	NA	138963315	138907562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963161
ENSMUSG00000072944.12_5	chrX	-	1837	8	ISM	ENSMUSG00000072944.12	ENSMUST00000101212.9	1996	9	23411	5	23136	-5	3prime_fragment	FALSE	canonical	3	477	junction_5	41.5038724527173	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTAAGTGGCTGAACTG	NA	False	NA	-14	True	AATAAA	-11	NA	138939906	138907558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798
ENSMUSG00000072944.12_8	chrX	-	1920	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-36	-2	combination_of_known_junctions	FALSE	canonical	3	36	junction_8	170.821864452417	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTGGCTGAACTGGGT	NA	False	NA	-11	True	AATAAA	-14	NA	138963078	138907555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138962996
ENSMUSG00000072945.4_1	chrX	-	1596	4	FSM	ENSMUSG00000072945.4	ENSMUST00000101217.4	811	4	-386	-399	-386	399	multi-exon	TRUE	canonical	3	9	junction_3	2.16024689946929	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAATTGTGCTGATTTCTT	NA	False	NA	NA	False	AATAAA	-24	NA	138683488	138679898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_138680762_138681239_138681305_138681861_138681938_138682896
ENSMUSG00000072946.13_0	chr12	+	3024	10	FSM	ENSMUSG00000072946.13	ENSMUST00000123614.8	3168	10	137	7	4	-7	multi-exon	FALSE	canonical	3	204	junction_5	23.1948270094864	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATGACTTATGACCACTT	NA	False	NA	NA	False	AATAAA	-18	NA	84332142	84362599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
ENSMUSG00000072946.13_10	chr12	+	1355	10	FSM	ENSMUSG00000072946.13	ENSMUST00000146377.8	2073	10	-26	744	-1	8	multi-exon	FALSE	canonical	3	10	junction_1	74.1401742114137	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTCTAGTGTGATAATAT	NA	False	NA	36	True	TTTAAA	-27	NA	84332153	84360884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84332308_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
ENSMUSG00000072946.13_2	chr12	+	1169	9	ISM	ENSMUSG00000072946.13	ENSMUST00000123614.8	3168	10	137	4840	4	1039	5prime_fragment	FALSE	canonical	3	204	junction_5	23.3492505233037	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACACATGGAGTGGGTTT	NA	False	NA	9	True	AATAAA	-21	NA	84332142	84357766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692
ENSMUSG00000072949.7_0	chr12	+	1561	3	FSM	ENSMUSG00000072949.7	ENSMUST00000168120.3	2272	3	7	704	7	3	multi-exon	FALSE	canonical	3	130	junction_1	2	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAGTTGTGTAACCGA	2826	False	NA	4	True	AATAAA	-15	NA	84056270	84064441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84056741_84061152_84061356_84063553
ENSMUSG00000072949.7_1	chr12	+	1262	3	NIC	ENSMUSG00000072949.7	novel	2272	3	NA	NA	5	3	combination_of_known_junctions	FALSE	canonical	2	16	junction_2	57	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAGTTGTGTAACCGA	2824	False	NA	4	True	AATAAA	-15	NA	84056268	84064441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_84056741_84061152_84061356_84063854
ENSMUSG00000072949.7_5	chr12	+	568	1	ISM	ENSMUSG00000072949.7	ENSMUST00000168120.3	2272	3	7610	704	2556	3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAGTTGTGTAACCGA	NA	False	NA	4	True	AATAAA	-15	NA	84063873	84064441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_84063900_84064400
ENSMUSG00000072955.15_0	chrX	-	535	4	FSM	ENSMUSG00000072955.15	ENSMUST00000127404.8	816	4	1	280	1	-280	multi-exon	FALSE	canonical	3	70	junction_2	61.5918465022405	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGGTGTGTAACTTCCT	NA	False	NA	NA	False	ATTAAA	-16	NA	135877617	135856016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_135856232_135857483_135857589_135876146_135876252_135877507
ENSMUSG00000072964.15_1	chrX	+	2722	5	FSM	ENSMUSG00000072964.15	ENSMUST00000180025.8	2812	5	86	4	-46	-4	multi-exon	FALSE	canonical	0	0	junction_1	89.3168517134365	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTACATTGTGTGTTTGTG	NA	False	NA	3	True	AATAAA	-14	NA	134786685	134791823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134786837_134787593_134787676_134788009_134788067_134789120_134789229_134789499
ENSMUSG00000072964.15_14	chrX	+	1783	1	ISM	ENSMUSG00000072964.15	ENSMUST00000180025.8	2812	5	3441	4	3309	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTACATTGTGTGTTTGTG	NA	False	NA	3	True	AATAAA	-14	NA	134790040	134791823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_134790000_134791800
ENSMUSG00000072964.15_2	chrX	+	2703	5	FSM	ENSMUSG00000072964.15	ENSMUST00000068755.14	2823	5	113	7	-17	-4	multi-exon	FALSE	canonical	3	24	junction_1	79.1296404642407	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTACATTGTGTGTTTGTG	NA	False	NA	3	True	AATAAA	-14	NA	134786714	134791823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134786847_134787593_134787676_134788009_134788067_134789120_134789229_134789499
ENSMUSG00000072966.12_10	chrX	+	3774	7	FSM	ENSMUSG00000072966.12	ENSMUST00000173804.8	3814	7	34	6	12	-2	multi-exon	TRUE	canonical	0	0	junction_1	54.6669207311169	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAATGACCCTTCTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	134739816	134745473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134740012_134740493_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
ENSMUSG00000072966.12_2	chrX	+	3737	7	NIC	ENSMUSG00000072966.12	novel	3814	7	NA	NA	12	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	54.6669207311169	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAATGACCCTTCTTCAC	NA	False	NA	NA	False	AATAAA	-19	NA	134739816	134745474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134740012_134740531_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
ENSMUSG00000072966.12_22	chrX	+	2274	1	ISM	ENSMUSG00000072966.12	ENSMUST00000173804.8	3814	7	3418	5	1889	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAATGACCCTTCTTCAC	NA	False	NA	NA	False	AATAAA	-19	NA	134743200	134745474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_134743200_134745500
ENSMUSG00000072966.12_4	chrX	+	4217	6	NIC	ENSMUSG00000072966.12	novel	617	6	NA	NA	0	-3	intron_retention	FALSE	canonical	3	20	junction_3	46.9680742632695	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATAAATGACCCTTCTTC	NA	False	NA	NA	False	AATAAA	-17	NA	134739854	134745472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
ENSMUSG00000072966.12_7	chrX	+	3792	7	NNC	ENSMUSG00000072966.12	novel	3814	7	NA	NA	12	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.103090257134	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAATGACCCTTCTTCAC	NA	False	NA	NA	False	AATAAA	-19	NA	134739816	134745474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_134740012_134740531_134740622_134741141_134741219_134741367_134741444_134741601_134741678_134741922_134742053_134742326
ENSMUSG00000072969.3_1	chrX	+	2782	4	FSM	ENSMUSG00000072969.3	ENSMUST00000096321.3	2779	4	-11	8	-11	-8	multi-exon	FALSE	canonical	3	91	junction_3	8.05536398239638	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACACAATGAAAACATTGT	NA	False	NA	NA	False	AATAAA	-11	NA	134643470	134648063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134645667
ENSMUSG00000072969.3_3	chrX	+	4238	2	FSM	ENSMUSG00000106264.3_ENSMUSG00000072969.3	ENSMUST00000128847.2	2329	2	-1	-1908	1	-8	multi-exon	FALSE	canonical	3	91	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACACAATGAAAACATTGT	NA	False	NA	NA	False	AATAAA	-11	NA	134643482	134648063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134645325_134645667
ENSMUSG00000072969.3_4	chrX	+	2722	3	NIC	ENSMUSG00000072969.3	novel	2779	4	NA	NA	1	-4	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	31	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATGAAAACATTGTTCCA	NA	False	NA	NA	False	AATAAA	-15	NA	134643482	134648067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134643728_134645247_134645325_134645667
ENSMUSG00000072969.3_5	chrX	+	3659	3	NIC	ENSMUSG00000072969.3	novel	2779	4	NA	NA	-4	-8	intron_retention	FALSE	canonical	3	91	junction_2	9	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACACAATGAAAACATTGT	NA	False	NA	NA	False	AATAAA	-11	NA	134643477	134648063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134643728_134644311_134645325_134645667
ENSMUSG00000072969.3_7	chrX	+	1955	1	FSM	ENSMUSG00000106264.3	ENSMUST00000196502.3	54	1	-1356	-545	-1356	545	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACACAATGAAAACATTGT	NA	False	NA	NA	False	AATAAA	-11	NA	134646108	134648063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134646100_134648100
ENSMUSG00000072980.4_0	chr2	-	1438	5	NIC	ENSMUSG00000072980.4	novel	1082	6	NA	NA	-19	1	combination_of_known_splicesites	FALSE	canonical	3	58	junction_3	272.52247613729	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGAATTT	7461	False	NA	NA	False	NA	NA	NA	119448969	119439991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_119440846_119442232_119442337_119443492_119443575_119448334_119448402_119448638
ENSMUSG00000072980.4_1	chr2	-	1562	6	FSM	ENSMUSG00000072980.4	ENSMUST00000123818.2	1082	6	-19	-461	-19	2	multi-exon	FALSE	canonical	3	618	junction_4	35.3870032639103	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATTTG	7461	False	NA	NA	False	NA	NA	NA	119448969	119439990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334_119448402_119448638
ENSMUSG00000073000.4_0	chr12	+	2669	2	FSM	ENSMUSG00000073000.4	ENSMUST00000219367.2	855	2	40	-1854	-23	-1	multi-exon	FALSE	canonical	3	44	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAGTTGCCTCAGTCGTGG	NA	False	NA	9	True	NA	NA	NA	76491310	76497288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_76491440_76494748
ENSMUSG00000073000.4_1	chr12	+	1155	3	ISM	ENSMUSG00000073000.4	ENSMUST00000101281.3	1598	4	-68	824	-5	-3	intron_retention	FALSE	canonical	2	4	junction_2	20	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGAGTTGCCTCAGTCGT	NA	False	NA	7	True	NA	NA	NA	76491265	76497286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_76491440_76494748_76494928_76496484
ENSMUSG00000073000.4_3	chr12	+	2682	1	FSM	ENSMUSG00000073000.4	ENSMUST00000220043.2	818	1	-1043	-821	-1043	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTGTACCGAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	76495428	76498110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_76495400_76498100
ENSMUSG00000073002.10_2	chr6	-	632	3	FSM	ENSMUSG00000073002.10	ENSMUST00000101285.10	623	3	-14	5	-14	1	multi-exon	FALSE	canonical	0	0	junction_2	4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATGCTCTCTCTCTCTC	9569	False	NA	NA	False	AGTAAA	-16	NA	72357419	72346015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72346454_72347176_72347315_72357363
ENSMUSG00000073016.4_0	chrX	+	7015	7	FSM	ENSMUSG00000073016.4	ENSMUST00000087867.6	2304	7	-13	-4698	-13	4698	multi-exon	FALSE	canonical	2	8	junction_1	1.67497927018682	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATTAAAATAAATT	NA	False	NA	NA	False	NA	NA	NA	103526410	103555794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_103526956_103539341_103539385_103541880_103541951_103543009_103543073_103545350_103545513_103547934_103548034_103549761
ENSMUSG00000073018.7_0	chr6	+	2873	2	FSM	ENSMUSG00000073018.7	ENSMUST00000114185.4	2874	2	0	1	0	-1	multi-exon	FALSE	canonical	3	49	junction_1	0	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTGTTGTGATGTGAT	NA	False	NA	10	True	NA	NA	NA	71270748	71279863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_71270843_71277084
ENSMUSG00000073018.7_3	chr6	+	2312	1	FSM	ENSMUSG00000073018.7	ENSMUST00000238902.2	582	1	442	-2172	442	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGTGTTGTGATGTGA	5843	False	NA	9	True	NA	NA	NA	71277550	71279862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_71277600_71279900
ENSMUSG00000073062.4_0	chrX	+	4604	1	FSM	ENSMUSG00000073062.4	ENSMUST00000101388.4	5619	1	1000	15	1000	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACGTTAAGATAAATTAAT	NA	False	NA	NA	False	AATAAA	-11	NA	93769174	93773778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_93769200_93773800
ENSMUSG00000073079.7_0	chr12	+	2134	16	FSM	ENSMUSG00000073079.7	ENSMUST00000220578.2	4498	16	272	2092	8	384	multi-exon	FALSE	canonical	3	524	junction_1	133.408578767967	371	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGGGTTCGTTAACTTT	2848	False	NA	NA	False	AATAAA	-15	NA	55127318	55160060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55142599_55142705_55143893_55143961_55144040_55144099_55146697_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
ENSMUSG00000073096.12_0	chr6	+	2883	3	FSM	ENSMUSG00000073096.12	ENSMUST00000114545.8	2913	3	26	4	-7	-3	multi-exon	FALSE	canonical	3	10	junction_1	2.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGTTGGTCTTGGTCATG	8305	False	NA	10	True	NA	NA	NA	48531755	48547652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48531917_48533888_48534029_48545070
ENSMUSG00000073096.12_1	chr6	+	2746	2	FSM	ENSMUSG00000073096.12	ENSMUST00000204071.2	373	2	-1	-2372	-1	-3	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGTTGGTCTTGGTCATG	8281	False	NA	10	True	NA	NA	NA	48531731	48547652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48531896_48545070
ENSMUSG00000073096.12_2	chr6	+	2799	3	FSM	ENSMUSG00000073096.12	ENSMUST00000146245.4	308	3	6	-2497	6	-3	multi-exon	FALSE	canonical	2	5	junction_1	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGTTGGTCTTGGTCATG	8300	False	NA	10	True	NA	NA	NA	48531750	48547652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48531828_48533888_48534029_48545070
ENSMUSG00000073096.12_3	chr6	+	2877	3	FSM	ENSMUSG00000073096.12	ENSMUST00000203627.2	666	3	-22	-2189	2	-3	multi-exon	FALSE	canonical	1	2	junction_1	6.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGTTGGTCTTGGTCATG	8290	False	NA	10	True	NA	NA	NA	48531740	48547652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48531896_48533888_48534029_48545070
ENSMUSG00000073096.12_5	chr6	+	1428	1	ISM	ENSMUSG00000073096.12	ENSMUST00000114545.8	2913	3	14492	7	14459	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTAGTTGGTCTTGGTC	5727	False	NA	7	True	NA	NA	NA	48546221	48547649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_48546200_48547600
ENSMUSG00000073096.12_7	chr6	+	2734	2	FSM	ENSMUSG00000073096.12	ENSMUST00000153222.2	374	2	32	-2392	2	-3	multi-exon	FALSE	canonical	3	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGTTGGTCTTGGTCATG	8314	False	NA	10	True	NA	NA	NA	48531764	48547652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48531917_48545070
ENSMUSG00000073125.11_1	chrX	+	1582	9	FSM	ENSMUSG00000073125.11	ENSMUST00000101486.5	1564	9	-11	-7	0	-2	multi-exon	FALSE	canonical	3	836	junction_5	296.174779479955	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	NA	False	AATAAA	-15	NA	72235816	72246533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72243351_72243451_72245455_72245552_72245645
ENSMUSG00000073125.11_19	chrX	+	3780	7	FSM	ENSMUSG00000073125.11	ENSMUST00000137641.8	3780	7	-3	3	-3	-2	multi-exon	FALSE	canonical	3	979	junction_3	266.969203384127	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	NA	False	AATAAA	-15	NA	72235809	72246533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72241992_72243351_72243451_72245455_72245552_72245645
ENSMUSG00000073125.11_2	chrX	+	2404	8	NIC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	856	junction_4	287.08421576042	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	NA	False	AATAAA	-15	NA	72235809	72246533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
ENSMUSG00000073125.11_8	chrX	+	1483	8	NIC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	0	-2	combination_of_known_splicesites	FALSE	canonical	3	39	junction_6	505.773079713883	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	NA	False	AATAAA	-15	NA	72235816	72246533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72245455_72245552_72245645
ENSMUSG00000073131.13_2	chrX	+	2089	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	35	2071	3	1651	multi-exon	FALSE	canonical	3	286	junction_1	56.5	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATGAGAGTCTTTATTT	NA	False	NA	NA	False	AATATA	-19	NA	70860398	70866241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_70860547_70863673_70863784_70864410
ENSMUSG00000073131.13_6	chrX	+	3051	1	ISM	ENSMUSG00000073131.13	ENSMUST00000114577.8	4652	4	5725	7	4836	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTACTGTGCTGTGTCC	NA	False	NA	9	True	ATTAAA	-13	NA	70865254	70868305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_70865300_70868300
ENSMUSG00000073139.10_0	chrX	-	2325	7	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	-13	-5	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	74.9288551449529	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATACTGTGTGTATTTT	NA	False	NA	-6	True	AATAAA	-15	NA	69520761	69503363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510810_69513723_69513901_69520583
ENSMUSG00000073139.10_1	chrX	-	2476	7	FSM	ENSMUSG00000073139.10	ENSMUST00000114630.3	1307	7	32	-1201	-6	-5	multi-exon	FALSE	canonical	3	188	junction_5	21.8587638158144	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATACTGTGTGTATTTT	NA	False	NA	-6	True	AATAAA	-15	NA	69520754	69503363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510968_69513723_69513901_69520583
ENSMUSG00000073139.10_11	chrX	-	2466	7	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	79.6773005455269	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGTGTATTTTATT	NA	False	NA	-3	True	AATAAA	-18	NA	69520746	69503360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510963_69513723_69513901_69520583
ENSMUSG00000073139.10_2	chrX	-	2382	6	FSM	ENSMUSG00000073139.10	ENSMUST00000101506.10	2429	6	42	5	4	-5	multi-exon	FALSE	canonical	3	32	junction_3	81.8300678235085	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATACTGTGTGTATTTT	NA	False	NA	-6	True	AATAAA	-15	NA	69520744	69503363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69510759_69510968_69513723_69513901_69520583
ENSMUSG00000073147.4_2	chr5	-	1055	1	FSM	ENSMUSG00000073147.4	ENSMUST00000189045.2	1983	1	934	-6	1	6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATATTCGTTAAAGCTCT	NA	False	NA	NA	False	AATAAA	-25	NA	23638333	23637278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_23637300_23638300
ENSMUSG00000073155.13_2	chr6	+	611	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	50	1860	-12	-1	multi-exon	FALSE	canonical	3	978	junction_2	33.5	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTTTCTGGTGAATTAAT	NA	False	NA	12	True	ATTAAA	-16	NA	35229638	35238571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_35229718_35237344_35237399_35238093
ENSMUSG00000073155.13_4	chr6	+	4042	2	ISM	ENSMUSG00000073155.13	ENSMUST00000130875.8	690	4	4181	4	4165	-4	3prime_fragment	FALSE	canonical	3	978	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGTTTCTGGTGAATT	NA	False	NA	9	True	ATTAAA	-13	NA	35233831	35238568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_35237399_35238093
ENSMUSG00000073155.13_5	chr6	+	276	1	ISM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	8709	1858	8631	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCTGGTGAATTAATCC	1763	False	NA	14	True	ATTAAA	-18	NA	35238297	35238573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_35238300_35238600
ENSMUSG00000073158.5_0	chr12	-	2443	9	Fusion	ENSMUSG00000073158.5_ENSMUSG00000113691.2	novel	1740	3	NA	NA	-5	166935	multi-exon	TRUE	non_canonical	0	0	junction_1	13.1719398723195	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTGAAATGTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24147252	23663922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_-_23664453_23832095_23832120_23978632_23978851_23979352_23979600_24121777_24122282_24122701_24123025_24124359_24124421_24124622_24124750_24146843
ENSMUSG00000073158.5_4	chr12	-	1920	4	NNC	ENSMUSG00000073158.5	novel	2245	4	NA	NA	-15	-334	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	14.7044966667418	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATACAATATCTATAGATG	NA	False	NA	NA	False	AGTAAA	-19	NA	24147262	24093536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_24094850_24124359_24124421_24124622_24124750_24146843
ENSMUSG00000073158.5_5	chr12	-	1709	2	NNC	ENSMUSG00000073158.5	novel	2245	4	NA	NA	9	-333	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACAATATCTATAGATGT	NA	False	NA	NA	False	AGTAAA	-20	NA	24147238	24093535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_24094850_24146843
ENSMUSG00000073164.12_6	chr12	-	1160	4	ISM	ENSMUSG00000073164.12	ENSMUST00000149246.8	3370	5	46	5678	5	0	5prime_fragment	FALSE	canonical	0	0	junction_2	1.69967317119759	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCCAGCTGAGCTCATC	NA	False	NA	-7	True	NA	NA	NA	23060239	23009677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_23010256_23042788_23042850_23043051_23043179_23059845
ENSMUSG00000073164.12_8	chr12	-	868	4	NNC	ENSMUSG00000073164.12	novel	3370	5	NA	NA	8575	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9.56846672960488	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGGCCCCAGCTGAGC	NA	False	NA	-12	True	NA	NA	NA	23051424	23009682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_23010256_23042788_23042850_23043051_23043179_23051317
ENSMUSG00000073176.5_0	chrX	+	3726	5	FSM	ENSMUSG00000073176.5	ENSMUST00000101560.4	3738	5	7	5	7	-5	multi-exon	FALSE	canonical	3	23	junction_1	8.6421930087218	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATGCTCTTTCTGATTC	NA	False	NA	1	True	AATAAA	-11	NA	55391766	55411029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_55391800_55393642_55394089_55398822_55399028_55407826_55407941_55408101
ENSMUSG00000073176.5_2	chrX	+	3694	4	ISM	ENSMUSG00000073176.5	ENSMUST00000101560.4	3738	5	1882	5	1882	-5	3prime_fragment	FALSE	canonical	3	32	junction_3	5.73488351136175	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATGCTCTTTCTGATTC	NA	False	NA	1	True	AATAAA	-11	NA	55393641	55411029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_55394089_55398822_55399028_55407826_55407941_55408101
ENSMUSG00000073176.5_4	chrX	+	1579	1	ISM	ENSMUSG00000073176.5	ENSMUST00000101560.4	3738	5	17693	3	17693	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCTCTTTCTGATTCTT	NA	False	NA	3	True	AATAAA	-13	NA	55409452	55411031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_55409500_55411000
ENSMUSG00000073176.5_5	chrX	+	3279	4	NIC	ENSMUSG00000073176.5	novel	3738	5	NA	NA	2	-11	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	18.8030730348939	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTATATATGCTCTTTC	NA	False	NA	-5	True	AATAAA	-5	NA	55391761	55411023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_55391800_55398822_55399028_55407826_55407941_55408101
ENSMUSG00000073177.9_0	chrX	-	944	8	FSM	ENSMUSG00000073177.9	ENSMUST00000101561.8	951	8	5	2	5	-2	multi-exon	FALSE	canonical	3	17	junction_1	4.42165358301205	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGATTTTTTGCAATGT	NA	False	NA	NA	False	AATAAA	-17	NA	55258236	55235188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_55235530_55239012_55239112_55241930_55242031_55242833_55242952_55246943_55246979_55247366_55247437_55248032_55248151_55258173
ENSMUSG00000073184.5_0	chr12	+	3924	4	Fusion	ENSMUSG00000073184.5_ENSMUSG00000113570.2_ENSMUSG00000113959.2	novel	241	3	NA	NA	-33	753	multi-exon	FALSE	canonical	0	0	junction_1	12.2474487139159	112	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTCCTTGTATTTGGTTG	NA	False	NA	10	True	AATAAA	-11	NA	19338529	19355945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_19338925_19350884_19351012_19351214_19351276_19352604
ENSMUSG00000073184.5_1	chr12	+	2589	5	Fusion	ENSMUSG00000073184.5_ENSMUSG00000113570.2_ENSMUSG00000113959.2	novel	241	3	NA	NA	-47	-706	multi-exon	FALSE	canonical	0	0	junction_1	10.6418983268964	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTGTCTCCATTATTTTT	NA	False	NA	NA	False	NA	NA	NA	19338515	19354486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_19338925_19339819_19339930_19350884_19351012_19351214_19351276_19352604
ENSMUSG00000073184.5_2	chr12	+	3139	4	Fusion	ENSMUSG00000073184.5_ENSMUSG00000113570.2	novel	241	3	NA	NA	-26	9906	multi-exon	FALSE	canonical	0	0	junction_1	12.9614813968157	42	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGTGGGGTGGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	19338536	19361171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_19338925_19350884_19351012_19351214_19351276_19358608
ENSMUSG00000073197.10_0	chr12	+	2548	5	Fusion	ENSMUSG00000073197.10_ENSMUSG00000116815.2	novel	2431	4	NA	NA	-66	396	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATAAAAATCATACTGG	NA	False	NA	-12	True	NA	NA	NA	18564444	18700395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_18564865_18696480_18696608_18696807_18696869_18698202_18698442_18698694
ENSMUSG00000073197.10_10	chr12	+	2541	5	Fusion	ENSMUSG00000073197.10_ENSMUSG00000116815.2	novel	2431	4	NA	NA	-66	388	multi-exon	TRUE	non_canonical	0	0	junction_1	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATTGAAATATAAAAAT	NA	False	NA	-20	True	NA	NA	NA	18564444	18700387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_18564865_18696480_18696608_18696807_18696869_18698202_18699090_18699341
ENSMUSG00000073197.10_2	chr12	+	2545	6	Fusion	ENSMUSG00000073197.10_ENSMUSG00000116815.2	novel	2431	4	NA	NA	-61	396	multi-exon	TRUE	non_canonical	0	0	junction_1	0.4	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATAAAAATCATACTGG	NA	False	NA	-12	True	NA	NA	NA	18564449	18700395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_18564865_18696480_18696608_18696807_18696869_18698202_18698754_18698836_18699174_18699341
ENSMUSG00000073197.10_4	chr12	+	2779	4	Fusion	ENSMUSG00000073197.10_ENSMUSG00000116815.2	novel	2431	4	NA	NA	-44	396	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATAAAAATCATACTGG	NA	False	NA	-12	True	NA	NA	NA	18564466	18700395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_18564865_18696480_18696608_18696807_18696869_18698202
ENSMUSG00000073207.2_0	chrX	+	1510	2	FSM	ENSMUSG00000073207.2	ENSMUST00000101588.2	1536	2	20	6	20	-6	multi-exon	FALSE	canonical	3	142	junction_1	0	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGCATAAAATATGCCTG	NA	False	NA	NA	False	AATAAA	-17	NA	51880096	51888339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_51880203_51886935
ENSMUSG00000073207.2_3	chrX	+	968	1	ISM	ENSMUSG00000073207.2	ENSMUST00000101588.2	1536	2	7295	6	7295	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGCATAAAATATGCCTG	NA	False	NA	NA	False	AATAAA	-17	NA	51887371	51888339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_51887400_51888300
ENSMUSG00000073226.10_0	chr5	+	2055	3	FSM	ENSMUSG00000073226.10	ENSMUST00000189825.2	2287	3	0	232	0	62	multi-exon	FALSE	canonical	0	0	junction_2	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATGGTGTCTTTGATGTG	3881	False	NA	NA	False	NA	NA	NA	10237838	10287490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_10237957_10283829_10284043_10285766
ENSMUSG00000073236.5_0	chr2	-	1594	2	FSM	ENSMUSG00000073236.5	ENSMUST00000139636.2	427	2	-8	-1159	-8	-319	multi-exon	FALSE	canonical	2	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTGCATTATTTTAA	9004	False	NA	NA	False	NA	NA	NA	153188001	153183395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_153184785_153187796
ENSMUSG00000073236.5_2	chr2	-	1948	2	FSM	ENSMUSG00000073236.5	ENSMUST00000128026.2	1898	2	-385	335	-122	-335	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATACTTGCTAAAA	8890	False	NA	NA	False	NA	NA	NA	153188115	153183411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_153184785_153187540
ENSMUSG00000073243.3_1	chrX	-	795	4	FSM	ENSMUSG00000073243.3	ENSMUST00000101636.3	817	4	32	-10	32	10	multi-exon	TRUE	canonical	3	60	junction_3	3.74165738677394	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATTTAGGTTGTGGCC	NA	False	NA	NA	False	ATTAAA	-22	NA	36474662	36472990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36473184_36473576_36473674_36473912_36474226_36474470
ENSMUSG00000073293.5_0	chrX	-	1849	2	FSM	ENSMUSG00000073293.5	ENSMUST00000103006.4	1775	2	-90	16	-90	-16	multi-exon	FALSE	canonical	3	9	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAATCATTGGAAATGCT	NA	False	NA	-8	True	NA	NA	NA	6085159	6080765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_6081851_6084395
ENSMUSG00000073294.5_0	chrX	-	1799	2	FSM	ENSMUSG00000073294.5	ENSMUST00000101698.4	1838	2	30	9	30	-9	multi-exon	FALSE	canonical	3	19	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTAGTCTCTTTGTT	NA	False	NA	-8	True	AATAAA	-15	NA	5995443	5993281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_5994830_5995192
ENSMUSG00000073294.5_1	chrX	-	2161	1	FSM	ENSMUSG00000073294.5	ENSMUST00000117544.2	2201	1	31	9	31	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTAGTCTCTTTGTT	NA	False	NA	-8	True	AATAAA	-15	NA	5995442	5993281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_5993300_5995400
ENSMUSG00000073295.5_0	chrX	+	2413	2	FSM	ENSMUSG00000073295.5	ENSMUST00000103007.4	3036	2	262	361	262	-361	multi-exon	FALSE	canonical	3	23	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCCTTAGAAGTTACTTG	NA	False	NA	12	True	NA	NA	NA	5959768	5966803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_5960459_5965080
ENSMUSG00000073295.5_2	chrX	+	1422	1	ISM	ENSMUSG00000073295.5	ENSMUST00000103007.4	3036	2	5604	632	5604	-632	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGCTGGAGTTTCTATT	NA	False	NA	NA	False	AATAAA	-13	NA	5965110	5966532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_5965100_5966500
ENSMUSG00000073374.4_0	chr17	+	1752	1	FSM	ENSMUSG00000073374.4	ENSMUST00000097289.3	1471	1	-37	-244	22	244	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAATAAAAAAAAGCAAACA	NA	False	NA	NA	False	AATAAA	-26	NA	69724418	69726170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_69724400_69726200
ENSMUSG00000073402.12_1	chr17	-	1220	7	Fusion	ENSMUSG00000073402.12_ENSMUSG00000073403.12	novel	1182	7	NA	NA	-305	-71	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACCCTTATAGTATA	NA	False	NA	NA	False	NA	NA	NA	36479084	36452720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_-_36452926_36475868_36475915_36476036_36476070_36476247_36476365_36476490_36476767_36478324_36478601_36478817
ENSMUSG00000073403.12_0	chr17	-	929	7	NNC	ENSMUSG00000073403.12	novel	1698	6	NA	NA	583	-71	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0.74535599249993	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACCCTTATAGTATA	NA	False	NA	NA	False	NA	NA	NA	36456053	36452720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_36452926_36453223_36453272_36453390_36453424_36453602_36453679_36453875_36453917_36454043_36454320_36455803
ENSMUSG00000073406.11_11	chr17	-	1202	6	FSM	ENSMUSG00000073406.11	ENSMUST00000195838.6	1105	6	-24	-73	-24	-1	multi-exon	FALSE	canonical	3	113	junction_5	180.752427369593	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAACTATGTTTCCTGCA	NA	False	NA	-6	True	AATAAA	-21	NA	36395139	36391007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394825_36395051
ENSMUSG00000073406.11_13	chr17	-	1235	6	FSM	ENSMUSG00000073406.11	ENSMUST00000173080.10	1138	6	-24	-73	-24	-1	multi-exon	FALSE	canonical	3	116	junction_4	160.992670640623	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAACTATGTTTCCTGCA	NA	False	NA	-6	True	AATAAA	-21	NA	36395139	36391007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394858_36395051
ENSMUSG00000073406.11_15	chr17	-	3137	4	NIC	ENSMUSG00000073406.11	novel	1064	6	NA	NA	-24	-1	intron_retention	FALSE	canonical	3	343	junction_3	99.8632398165945	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAACTATGTTTCCTGCA	NA	False	NA	-6	True	AATAAA	-21	NA	36395139	36391007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_36391216_36391890_36392008_36392133_36394858_36395051
ENSMUSG00000073406.11_16	chr17	-	3331	3	FSM	ENSMUSG00000073406.11	ENSMUST00000184850.8	1072	3	-2260	1	-24	-1	multi-exon	FALSE	canonical	3	395	junction_2	90.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAACTATGTTTCCTGCA	NA	False	NA	-6	True	AATAAA	-21	NA	36395139	36391007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36391216_36391890_36392008_36392133
ENSMUSG00000073406.11_21	chr17	-	858	4	ISM	ENSMUSG00000073406.11	ENSMUST00000173080.10	1138	6	735	-74	705	0	3prime_fragment	FALSE	canonical	3	192	junction_3	156.853080584631	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTATGTTTCCTGCAT	NA	False	NA	-5	True	AATAAA	-22	NA	36394380	36391006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124
ENSMUSG00000073406.11_3	chr17	-	926	5	FSM	ENSMUSG00000073406.11	ENSMUST00000195833.6	829	5	-24	-73	-24	-1	multi-exon	FALSE	canonical	3	113	junction_4	176.893329438959	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAACTATGTTTCCTGCA	NA	False	NA	-6	True	AATAAA	-21	NA	36395139	36391007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394825_36395051
ENSMUSG00000073406.11_9	chr17	-	959	5	FSM	ENSMUSG00000073406.11	ENSMUST00000194244.6	862	5	-24	-73	-24	-1	multi-exon	FALSE	canonical	3	214	junction_3	129.95191418367	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAACTATGTTTCCTGCA	NA	False	NA	-6	True	AATAAA	-21	NA	36395139	36391007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394858_36395051
ENSMUSG00000073411.13_0	chr17	+	1582	8	FSM	ENSMUSG00000073411.13	ENSMUST00000172785.8	2102	8	368	152	2	-6	multi-exon	FALSE	canonical	3	37	junction_3	6.54341856605645	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATAATTTGAAAGTGA	2087	False	NA	NA	False	NA	NA	NA	35482073	35486323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485457_35485491_35485663_35485703_35485841
ENSMUSG00000073411.13_13	chr17	+	743	5	ISM	ENSMUSG00000073411.13	ENSMUST00000172785.8	2102	8	3258	152	511	-6	3prime_fragment	FALSE	canonical	3	41	junction_2	5.40254569624358	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATAATTTGAAAGTGA	4977	False	NA	NA	False	NA	NA	NA	35484963	35486323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35485036_35485162_35485280_35485457_35485491_35485663_35485703_35485841
ENSMUSG00000073411.13_18	chr17	+	1601	6	NIC	ENSMUSG00000073411.13	novel	2102	8	NA	NA	132	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	18.1041431722134	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAATAATTTGAAA	2217	False	NA	NA	False	NA	NA	NA	35482203	35486319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485457_35485491_35485841
ENSMUSG00000073411.13_5	chr17	+	1913	6	NIC	ENSMUSG00000073411.13	novel	1744	7	NA	NA	0	-6	intron_retention	FALSE	canonical	3	37	junction_2	6.8818602136341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATAATTTGAAAGTGA	2085	False	NA	NA	False	NA	NA	NA	35482071	35486323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35482163_35482354_35483091_35484759_35485036_35485162_35485280_35485457_35485491_35485663
ENSMUSG00000073411.13_8	chr17	+	1643	7	ISM	ENSMUSG00000073411.13	ENSMUST00000172785.8	2102	8	499	152	133	-6	3prime_fragment	FALSE	canonical	3	37	junction_2	6.22941053034359	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATAATTTGAAAGTGA	2218	False	NA	NA	False	NA	NA	NA	35482204	35486323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485457_35485491_35485663_35485703_35485841
ENSMUSG00000073411.13_9	chr17	+	1548	5	NIC	ENSMUSG00000073411.13	novel	2102	8	NA	NA	144	-18	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	19.880895352071	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAGTCTTTAAAAAATA	2229	False	NA	NA	False	NA	NA	NA	35482215	35486311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485841
ENSMUSG00000073412.7_0	chr17	-	398	4	FSM	ENSMUSG00000073412.7	ENSMUST00000097336.5	415	4	8	9	8	-9	multi-exon	FALSE	canonical	2	6	junction_2	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGCATCAGGCTTCTC	NA	False	NA	NA	False	AGTAAA	-13	NA	35407407	35404079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35404287_35405560_35405581_35405921_35406018_35407332
ENSMUSG00000073413.10_0	chr17	-	802	3	FSM	ENSMUSG00000073413.10	ENSMUST00000172639.8	690	3	16	-128	7	94	multi-exon	FALSE	canonical	2	8	junction_2	7	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGAAATGTTCGTTTGGGT	NA	False	NA	NA	False	NA	NA	NA	35297025	35290324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35290736_35293150_35293289_35296772
ENSMUSG00000073421.7_0	chr17	+	1175	6	FSM	ENSMUSG00000073421.7	ENSMUST00000040828.7	1212	6	28	9	-13	0	multi-exon	FALSE	canonical	3	16	junction_1	17.3735431043872	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGATTTGGCTTTGA	NA	False	NA	3	True	NA	NA	NA	34482210	34488384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34482380_34483734_34484008_34486309_34486592_34486896_34487008_34487434_34487459_34488068
ENSMUSG00000073421.7_5	chr17	+	1067	5	ISM	ENSMUSG00000073421.7	ENSMUST00000040828.7	1212	6	1491	9	1369	0	3prime_fragment	FALSE	canonical	3	50	junction_2	5.35607132140714	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGATTTGGCTTTGA	NA	False	NA	3	True	NA	NA	NA	34483673	34488384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34484008_34486309_34486592_34486896_34487008_34487434_34487459_34488068
ENSMUSG00000073422.12_0	chr17	-	968	9	FSM	ENSMUSG00000073422.12	ENSMUST00000045467.14	965	9	-4	1	0	-1	multi-exon	FALSE	canonical	3	92	junction_8	37.2237743250198	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCGGTTCTTCTTGTGT	NA	False	NA	-2	True	AATAAA	-22	NA	34247034	34245007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246975
ENSMUSG00000073422.12_18	chr17	-	989	9	NIC	ENSMUSG00000073422.12	novel	965	9	NA	NA	0	-1	combination_of_known_junctions	TRUE	canonical	2	13	junction_8	57.8748650106417	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCGGTTCTTCTTGTGT	NA	False	NA	-2	True	AATAAA	-22	NA	34247034	34245007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246954
ENSMUSG00000073422.12_2	chr17	-	1125	8	ISM	ENSMUSG00000073422.12	ENSMUST00000045467.14	965	9	0	1	0	-1	intron_retention	FALSE	canonical	3	114	junction_7	29.9400762067385	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCGGTTCTTCTTGTGT	NA	False	NA	-2	True	AATAAA	-22	NA	34247030	34245007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596
ENSMUSG00000073422.12_3	chr17	-	1229	7	ISM	ENSMUSG00000073422.12	ENSMUST00000045467.14	965	9	-4	1	0	-1	intron_retention	FALSE	canonical	3	139	junction_4	22.7406879598857	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCGGTTCTTCTTGTGT	NA	False	NA	-2	True	AATAAA	-22	NA	34247034	34245007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379
ENSMUSG00000073422.12_4	chr17	-	1138	8	FSM	ENSMUSG00000073422.12	ENSMUST00000237759.2	1133	8	-6	1	0	-1	multi-exon	FALSE	canonical	3	92	junction_7	39.6227104533936	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCGGTTCTTCTTGTGT	NA	False	NA	-2	True	AATAAA	-22	NA	34247034	34245007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246975
ENSMUSG00000073422.12_5	chr17	-	1309	6	FSM	ENSMUSG00000073422.12	ENSMUST00000170644.8	1293	6	-14	-2	0	-1	multi-exon	FALSE	canonical	3	162	junction_4	17.6748408762286	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCGGTTCTTCTTGTGT	NA	False	NA	-2	True	AATAAA	-22	NA	34247034	34245007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34246076_34246176_34246270_34246379
ENSMUSG00000073423.11_0	chr17	+	1125	6	FSM	ENSMUSG00000073423.11	ENSMUST00000073570.12	1197	6	5	67	5	-4	multi-exon	FALSE	canonical	3	354	junction_1	31.6569107779012	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACTGGTACCTATGC	4922	False	NA	25	True	AATACA	-15	NA	33848068	33850686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUSG00000073423.11_11	chr17	+	1568	5	FSM	ENSMUSG00000073423.11	ENSMUST00000172455.3	1544	5	-2	-22	-2	-4	multi-exon	FALSE	canonical	3	354	junction_1	35.2233942146409	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACTGGTACCTATGC	4926	False	NA	25	True	AATACA	-15	NA	33848072	33850686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33850438_33850515
ENSMUSG00000073423.11_13	chr17	+	1212	7	NIC	ENSMUSG00000073423.11	novel	1211	7	NA	NA	0	-4	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	175.009206107057	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACTGGTACCTATGC	4928	False	NA	25	True	AATACA	-15	NA	33848074	33850686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_33848191_33848595_33848673_33848754_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUSG00000073423.11_2	chr17	+	1222	7	NIC	ENSMUSG00000073423.11	novel	1211	7	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	176.614143135694	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATGACTGGTACCTATG	4928	False	NA	24	True	AATACA	-14	NA	33848074	33850685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_33848191_33848595_33848673_33848743_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUSG00000073423.11_3	chr17	+	1650	4	ISM	ENSMUSG00000073423.11	ENSMUST00000172455.3	1544	5	-6	-22	5	-4	intron_retention	FALSE	canonical	3	354	junction_1	39.2031744746377	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACTGGTACCTATGC	4922	False	NA	25	True	AATACA	-15	NA	33848068	33850686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549
ENSMUSG00000073423.11_5	chr17	+	1202	7	FSM	ENSMUSG00000073423.11	ENSMUST00000166627.8	1211	7	5	4	5	-4	multi-exon	FALSE	canonical	3	63	junction_2	162.952702749397	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACTGGTACCTATGC	4922	False	NA	25	True	AATACA	-15	NA	33848068	33850686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33848191_33848595_33848673_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUSG00000073427.5_0	chr10	+	3376	4	FSM	ENSMUSG00000073427.5	ENSMUST00000210381.2	3330	4	-46	0	11	0	multi-exon	FALSE	canonical	3	117	junction_3	14.0554457615387	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTTTATGTTGTC	NA	False	NA	3	True	AATAAA	-15	NA	82190103	82215470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82212394
ENSMUSG00000073427.5_12	chr10	+	2319	1	FSM	ENSMUSG00000073427.5	ENSMUST00000165906.2	2645	1	-1275	1601	-1275	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTTTATGTTGTC	NA	False	NA	3	True	AATAAA	-15	NA	82213151	82215470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_82213200_82215500
ENSMUSG00000073427.5_2	chr10	+	2423	5	FSM	ENSMUSG00000073427.5	ENSMUST00000211099.2	490	5	14	-1947	10	1947	multi-exon	FALSE	canonical	3	10	junction_3	62.9816441512922	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATGACAAGTATCCCA	NA	False	NA	NA	False	NA	NA	NA	82190102	82238627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82219596_82219679_82236587
ENSMUSG00000073433.12_0	chr17	-	990	6	FSM	ENSMUSG00000073433.12	ENSMUST00000025019.9	1032	6	42	0	42	0	multi-exon	FALSE	canonical	3	81	junction_2	6.72309452558864	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTGTGCTGCTTCTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	26420282	26418156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26420044
ENSMUSG00000073433.12_7	chr17	-	902	6	FSM	ENSMUSG00000073433.12	ENSMUST00000121959.3	1029	6	132	-5	-93	1	multi-exon	TRUE	canonical	3	7	junction_2	34.8906864363543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGTGCTGCTTCTTTC	NA	False	NA	-3	True	ATTAAA	-18	NA	26420211	26418155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26418504_26418586_26418651_26418743_26418803_26418988_26419073_26419164_26419345_26420044
ENSMUSG00000073434.13_7	chr17	-	5932	41	FSM	ENSMUSG00000073434.13	ENSMUST00000176923.9	5962	41	25	5	-1	-3	multi-exon	FALSE	canonical	3	25	junction_38	17.4845646214025	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGATACATTGTTTTATTG	9833	False	NA	NA	False	AATAAA	-17	NA	26080450	26063750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26064200_26064348_26064434_26064552_26064673_26064744_26064889_26064972_26065104_26065213_26065389_26065497_26065621_26066773_26066946_26067300_26067413_26067501_26067671_26067946_26068138_26068227_26068388_26068536_26068659_26068841_26068945_26069391_26069490_26069720_26069913_26070369_26070502_26070691_26070733_26070805_26070922_26071129_26071259_26071371_26071534_26071799_26071931_26072695_26072827_26073011_26073152_26073503_26073740_26074091_26074209_26074274_26074406_26074481_26074644_26074732_26074852_26075935_26075994_26076072_26076219_26076298_26076410_26077709_26077779_26078073_26078293_26078362_26078467_26078831_26078900_26078992_26079108_26079345_26079517_26079682_26079792_26079880_26080058_26080158
ENSMUSG00000073434.13_8	chr17	-	2428	16	ISM	ENSMUSG00000073434.13	ENSMUST00000177170.8	5946	40	10565	4	942	-1	3prime_fragment	FALSE	canonical	3	38	junction_13	12.3259437321809	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATACATTGTTTTATTGTC	NA	False	NA	NA	False	AATAAA	-19	NA	26069792	26063748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26064200_26064348_26064434_26064552_26064673_26064744_26064889_26064972_26065104_26065213_26065389_26065497_26065621_26066773_26066946_26067300_26067413_26067501_26067671_26067946_26068138_26068227_26068388_26068536_26068659_26068841_26068945_26069391_26069490_26069720
ENSMUSG00000073434.13_9	chr17	-	5996	41	FSM	ENSMUSG00000073434.13	ENSMUST00000079461.15	5991	41	-9	4	-9	-1	multi-exon	TRUE	canonical	2	3	junction_38	18.7159691173073	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATACATTGTTTTATTGTC	9825	False	NA	NA	False	AATAAA	-19	NA	26080458	26063748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26064200_26064348_26064434_26064552_26064673_26064744_26064889_26064972_26065104_26065213_26065389_26065497_26065621_26066773_26066946_26067300_26067413_26067501_26067671_26067946_26068138_26068227_26068388_26068536_26068659_26068841_26068945_26069391_26069490_26069720_26069913_26070369_26070502_26070691_26070733_26070805_26070922_26071129_26071259_26071371_26071534_26071799_26071931_26072695_26072827_26073011_26073152_26073503_26073740_26074091_26074209_26074274_26074406_26074481_26074644_26074732_26074852_26075935_26075994_26076072_26076219_26076298_26076410_26077709_26077779_26078073_26078293_26078362_26078467_26078831_26078900_26078992_26079108_26079345_26079517_26079628_26079792_26079880_26080058_26080158
ENSMUSG00000073435.11_1	chr17	+	690	5	FSM	ENSMUSG00000073435.11	ENSMUST00000024978.7	715	5	4	21	-1	17	multi-exon	FALSE	canonical	3	182	junction_1	9.82344135219425	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGCGCTGGTGAAGTTT	NA	False	NA	15	True	AATAAA	-14	NA	25115477	25116475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25115534_25115601_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUSG00000073435.11_4	chr17	+	760	4	ISM	ENSMUSG00000073435.11	ENSMUST00000024978.7	715	5	13	15	-8	-15	intron_retention	FALSE	canonical	3	182	junction_1	9.62635271879577	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTGGTGAAGTTTCAAGAC	NA	False	NA	21	True	AATAAA	-20	NA	25115486	25116481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_25115534_25115601_25115733_25115825_25115928_25116001
ENSMUSG00000073435.11_7	chr17	+	668	4	FSM	ENSMUSG00000073435.11	ENSMUST00000145688.8	484	4	67	-251	65	11	multi-exon	FALSE	canonical	3	183	junction_3	9.17726659862414	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCCTTGTGCGCTGGTG	NA	False	NA	9	True	AATAAA	-8	NA	25115561	25116469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUSG00000073436.12_14	chr17	-	1534	7	FSM	ENSMUSG00000073436.12	ENSMUST00000119848.8	5226	7	19	3673	-11	-4	multi-exon	FALSE	canonical	3	26	junction_1	3.80423740350444	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGCAGCTTGGGCATTTG	1915	False	NA	NA	False	GATAAA	-9	NA	25114010	25111132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
ENSMUSG00000073436.12_4	chr17	-	1608	7	ISM	ENSMUSG00000073436.12	ENSMUST00000121542.2	1521	8	25	1	0	-1	intron_retention	FALSE	canonical	3	24	junction_1	5.05525029603437	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGGGCATTTGTGAAGG	1889	False	NA	NA	False	GATAAA	-15	NA	25114036	25111126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_25111658_25111728_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544
ENSMUSG00000073436.12_8	chr17	-	1493	8	FSM	ENSMUSG00000073436.12	ENSMUST00000121542.2	1521	8	25	3	0	0	multi-exon	TRUE	canonical	3	24	junction_1	4.68606270481621	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTTGGGCATTTGTGAA	1889	False	NA	NA	False	GATAAA	-13	NA	25114036	25111128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_25111658_25111728_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
ENSMUSG00000073460.6_0	chr17	-	1793	19	FSM	ENSMUSG00000073460.6	ENSMUST00000163394.3	2092	19	297	2	13	-1	multi-exon	FALSE	canonical	3	109	junction_10	13.5984067694222	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTCTGTACATGGCCAGT	2987	False	NA	-10	True	GATAAA	-18	NA	13128820	13107617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
ENSMUSG00000073460.6_24	chr17	-	1778	19	NIC	ENSMUSG00000073460.6	novel	2092	19	NA	NA	-21	0	combination_of_known_junctions	TRUE	canonical	3	9	junction_10	31.2750146796109	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTGTACATGGCCAGTG	3006	False	NA	-9	True	GATAAA	-19	NA	13128801	13107616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116221_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
ENSMUSG00000073460.6_37	chr17	-	1039	3	ISM	ENSMUSG00000073460.6	ENSMUST00000232982.2	620	8	-41	8118	12	-8118	5prime_fragment	FALSE	canonical	3	130	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	2986	False	NA	NA	False	NA	NA	NA	13128821	13127131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_13128014_13128348_13128407_13128722
ENSMUSG00000073468.13_0	chr17	+	980	8	FSM	ENSMUSG00000073468.13	ENSMUST00000154553.2	1049	8	67	2	0	0	multi-exon	FALSE	canonical	3	730	junction_5	48.6457414710199	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTCTGGATCAACTG	2990	False	NA	NA	False	AATAAA	-17	NA	8530000	8546272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
ENSMUSG00000073468.13_1	chr17	+	3548	6	NIC	ENSMUSG00000073468.13	novel	2490	7	NA	NA	-9	0	intron_retention	FALSE	canonical	3	775	junction_5	42.1872018507983	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTCTGGATCAACTG	2981	False	NA	NA	False	AATAAA	-17	NA	8529991	8546272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8542168_8543265_8543296_8545786
ENSMUSG00000073468.13_2	chr17	+	821	6	FSM	ENSMUSG00000073468.13	ENSMUST00000145276.8	810	6	-11	0	-11	0	multi-exon	FALSE	canonical	3	190	junction_1	242.374586126516	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTCTGGATCAACTG	2979	False	NA	NA	False	AATAAA	-17	NA	8529989	8546272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_8530118_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
ENSMUSG00000073471.4_0	chr17	+	1510	8	FSM	ENSMUSG00000073471.4	ENSMUST00000097423.3	2189	8	334	345	-8	-25	multi-exon	TRUE	canonical	3	57	junction_4	7.41482244134913	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAATAAAATAAA	NA	False	NA	NA	False	ACTAAA	-39	NA	8164818	8198311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_8165136_8171380_8171469_8188978_8189121_8191655_8191802_8192768_8192973_8194876_8195040_8197549_8197637_8197948
ENSMUSG00000073478.7_0	chr1	+	548	2	FSM	ENSMUSG00000073478.7	ENSMUST00000139056.3	716	2	20	148	0	-148	multi-exon	FALSE	canonical	3	14	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTTCAGTTTCTTCT	NA	False	NA	11	True	GATAAA	-17	NA	190956670	190957884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_190956740_190957405
ENSMUSG00000073481.10_0	chr1	-	1257	8	FSM	ENSMUSG00000073481.10	ENSMUST00000068725.10	1917	8	38	622	4	2	multi-exon	FALSE	canonical	3	760	junction_6	70.0437181264644	601	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGAATGCTACACCCGC	NA	False	NA	-22	True	AATAAA	-19	NA	184578040	184545886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184564772_184564914_184566056_184566226_184573450_184573625_184577742
ENSMUSG00000073485.4_0	chr1	+	1355	1	FSM	ENSMUSG00000073485.4	ENSMUST00000097448.3	2905	1	-50	1600	-42	-1600	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGGCTGTTACATATCA	600	False	NA	NA	False	ACTAAA	-23	NA	180641298	180642653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_180641300_180642700
ENSMUSG00000073538.11_0	chr1	-	535	2	FSM	ENSMUSG00000073538.11	ENSMUST00000186785.7	1964	2	3	1426	3	-6	multi-exon	FALSE	canonical	3	87	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGATTTGAGGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	153283533	153281998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_153282348_153283347
ENSMUSG00000073542.4_1	chr18	-	3596	12	FSM	ENSMUSG00000073542.4	ENSMUST00000097542.4	3576	12	-22	2	-22	-1	multi-exon	FALSE	canonical	3	66	junction_4	9.14800253679584	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTAGTTTTGGATGTCTT	808	False	NA	-6	True	AATAAA	-16	NA	67774428	67750871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_67752443_67752605_67752824_67756206_67756541_67757999_67758167_67759589_67759779_67762888_67763018_67766520_67766619_67767824_67768011_67770208_67770434_67771335_67771412_67773077_67773234_67774181
ENSMUSG00000073542.4_15	chr18	-	1470	1	ISM	ENSMUSG00000073542.4	ENSMUST00000097542.4	3576	12	22066	1	19643	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAGTTTTGGATGTCTTG	NA	False	NA	-5	True	AATAAA	-17	NA	67752340	67750870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_67750900_67752300
ENSMUSG00000073542.4_5	chr18	-	3539	12	NNC	ENSMUSG00000073542.4	novel	3576	12	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_9	20.7101204947989	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAGTTTTGGATGTCTTG	828	False	NA	-5	True	AATAAA	-17	NA	67774408	67750870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_67752443_67752605_67752824_67756206_67756541_67757999_67758167_67759589_67759779_67762888_67763018_67766520_67766619_67767824_67768011_67770208_67770396_67771335_67771412_67773077_67773234_67774181
ENSMUSG00000073557.13_2	chr1	-	2997	18	ISM	ENSMUSG00000073557.13	ENSMUST00000086444.6	3137	24	4	68121	4	-1	5prime_fragment	FALSE	canonical	0	0	junction_16	2.12091251497882	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATTTGAGGCTGTTTAAA	NA	False	NA	NA	False	AATAAA	-13	NA	134883674	134761801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_134762215_134763522_134763636_134763715_134763906_134765590_134765780_134770380_134770472_134793515_134793699_134800544_134800671_134801676_134801760_134803702_134803904_134807370_134807484_134814160_134814301_134815012_134815093_134818493_134818569_134819895_134820041_134821087_134821248_134824080_134824200_134830115_134830247_134883229
ENSMUSG00000073557.13_5	chr1	-	4522	1	ISM	ENSMUSG00000073557.13	ENSMUST00000045665.13	8840	24	196751	10	1164	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCCATGAGATTGATAGA	NA	False	NA	NA	False	AATAAA	-16	NA	134686927	134682405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_134682400_134686900
ENSMUSG00000073563.4_0	chr18	+	4265	12	NIC	ENSMUSG00000073563.4	novel	4249	13	NA	NA	-16	24	combination_of_known_junctions	FALSE	canonical	3	96	junction_8	36.435156938828	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCGCTCTTTCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	53995177	54088644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065262_54065412_54066521_54066618_54081119_54081227_54086316
ENSMUSG00000073563.4_10	chr18	+	4280	13	NNC	ENSMUSG00000073563.4	novel	4249	13	NA	NA	-10	24	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_11	65.9298343358722	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCGCTCTTTCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	53995183	54088644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065265_54065412_54066521_54066618_54081119_54081227_54081716_54081741_54086316
ENSMUSG00000073563.4_2	chr18	+	4267	12	NNC	ENSMUSG00000073563.4	novel	4249	13	NA	NA	-21	24	at_least_one_novel_splicesite	TRUE	canonical	3	113	junction_8	32.497425199977	170	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCGCTCTTTCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	53995172	54088644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065265_54065412_54066521_54066618_54081119_54081227_54086316
ENSMUSG00000073563.4_5	chr18	+	4273	13	FSM	ENSMUSG00000073563.4	ENSMUST00000069597.8	4249	13	0	-24	0	24	multi-exon	FALSE	canonical	3	32	junction_11	67.2040838706167	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCGCTCTTTCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	53995193	54088644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065262_54065412_54066521_54066618_54081119_54081227_54081716_54081741_54086316
ENSMUSG00000073568.3_1	chr18	+	2245	5	FSM	ENSMUSG00000073568.3	ENSMUST00000234910.2	2257	5	3	9	3	1	multi-exon	FALSE	canonical	3	262	junction_1	19.1441897190766	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGGGTTTTCAGGGTT	NA	False	NA	17	True	AATAAA	-13	NA	47054884	47067290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061726_47065472
ENSMUSG00000073568.3_22	chr18	+	2170	4	FSM	ENSMUSG00000073568.3	ENSMUST00000097580.2	2169	4	0	-1	0	1	multi-exon	FALSE	canonical	3	279	junction_2	15.9234278833282	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGGGTTTTCAGGGTT	2986	False	NA	17	True	AATAAA	-13	NA	47059048	47067290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_47059157_47059378_47059483_47061585_47061726_47065472
ENSMUSG00000073568.3_26	chr18	+	1425	1	ISM	ENSMUSG00000073568.3	ENSMUST00000234910.2	2257	5	10983	10	6816	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGCTGGGTTTTCAGGGT	9802	False	NA	16	True	AATAAA	-12	NA	47065864	47067289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_47065900_47067300
ENSMUSG00000073590.4_0	chr18	+	2797	1	FSM	ENSMUSG00000073590.4	ENSMUST00000097608.3	2831	1	34	0	34	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGATGTATATTTTAAATA	NA	False	NA	NA	False	AATAAA	-14	NA	37788993	37791790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37789000_37791800
ENSMUSG00000073598.4_0	chr18	+	1437	2	FSM	ENSMUSG00000073598.4	ENSMUST00000097617.3	2504	2	-34	1101	-34	-2	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACAGCACAGTGGTACT	1308	False	NA	NA	False	AAGAAA	-21	NA	35860007	35862821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35860150_35861526
ENSMUSG00000073599.11_0	chr18	-	945	8	NIC	ENSMUSG00000073599.11	novel	1114	9	NA	NA	274	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	2.67261241912424	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAATTTCTTTTAAGGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	35850666	35846138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_35846488_35846693_35846791_35848231_35848269_35848475_35848575_35849005_35849129_35849805_35849866_35850205_35850344_35850624
ENSMUSG00000073599.11_1	chr18	-	996	9	FSM	ENSMUSG00000073599.11	ENSMUST00000133064.8	1055	9	57	2	-6	0	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCAATTTCTTTTAAGGT	NA	False	NA	NA	False	ATTAAA	-18	NA	35855352	35846140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35846488_35846693_35846791_35848231_35848269_35848475_35848575_35849005_35849129_35849805_35849866_35850205_35850344_35851400_35851440_35855296
ENSMUSG00000073600.6_0	chr18	-	4102	1	FSM	ENSMUSG00000073600.6	ENSMUST00000190196.5	4888	1	777	9	726	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGACAACCAAGTGTGTA	NA	False	NA	NA	False	AATAAA	-30	NA	35787514	35783412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35783400_35787500
ENSMUSG00000073609.10_0	chr1	+	3136	10	NNC	ENSMUSG00000073609.10	novel	3459	10	NA	NA	-7	-318	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	14.4640892054498	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACACCCAGCTTACCTTG	NA	False	NA	NA	False	NA	NA	NA	93752988	93779752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_93753303_93754018_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
ENSMUSG00000073609.10_12	chr1	+	3381	10	FSM	ENSMUSG00000073609.10	ENSMUST00000112881.8	3459	10	-18	96	16	-96	multi-exon	FALSE	canonical	2	4	junction_1	13.9761701954911	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCTGCTATCAGTTTCTG	NA	False	NA	NA	False	AATACA	-16	NA	93752977	93779974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_93753303_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
ENSMUSG00000073609.10_15	chr1	+	2842	9	NIC	ENSMUSG00000073609.10	novel	3232	10	NA	NA	-8	-170	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	16.5151445649137	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTATTCTCTATCACTTG	NA	False	NA	NA	False	AATAGA	-26	NA	93752987	93779900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_93753042_93754006_93754363_93756927_93756986_93757478_93757619_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
ENSMUSG00000073609.10_17	chr1	+	2701	9	ISM	ENSMUSG00000073609.10	ENSMUST00000112881.8	3459	10	1149	313	138	-313	3prime_fragment	FALSE	canonical	3	21	junction_1	9.50575483588757	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGCTTACCTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	93754144	93779757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
ENSMUSG00000073609.10_3	chr1	+	3154	10	NNC	ENSMUSG00000073609.10	novel	3459	10	NA	NA	9	-313	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	13.0365109321456	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGCTTACCTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	93752970	93779757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_93753303_93754023_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
ENSMUSG00000073609.10_4	chr1	+	2908	10	FSM	ENSMUSG00000073609.10	ENSMUST00000097633.10	3232	10	9	315	9	-315	multi-exon	FALSE	canonical	3	12	junction_1	12.154357040244	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCAGCTTACCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	93752970	93779755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_93753042_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
ENSMUSG00000073609.10_9	chr1	+	2854	10	NNC	ENSMUSG00000073609.10	novel	3232	10	NA	NA	14	-313	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	13.736497298245	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGCTTACCTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	93753009	93779757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_93753042_93754023_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
ENSMUSG00000073616.11_0	chr1	-	399	3	FSM	ENSMUSG00000073616.11	ENSMUST00000097642.4	438	3	26	13	26	-13	multi-exon	FALSE	canonical	3	610	junction_1	1	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTGATTTTAATTCCTGT	NA	False	NA	-32	True	AATAAA	-17	NA	92569681	92564879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_92565126_92567408_92567482_92569601
ENSMUSG00000073616.11_2	chr1	-	271	2	FSM	ENSMUSG00000073616.11	ENSMUST00000154129.8	482	2	194	17	194	-17	multi-exon	FALSE	canonical	3	610	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCAGGGTGATTTTAATTC	NA	False	NA	-36	True	AATAAA	-13	NA	92567437	92564883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_92565126_92567408
ENSMUSG00000073627.8_0	chr1	+	286	1	FSM	ENSMUSG00000073627.8	ENSMUST00000190804.2	3185	1	88	2811	88	-2811	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAGCAGTGCACAAGCGAT	NA	False	NA	NA	False	AATAAA	-24	NA	86287397	86287683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_86287400_86287700
ENSMUSG00000073633.10_0	chr1	+	885	4	FSM	ENSMUSG00000073633.10	ENSMUST00000097672.4	901	4	13	3	1	-3	multi-exon	FALSE	canonical	0	0	junction_1	27.3536509852382	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTTGTGTTCTGGTTTGT	NA	False	NA	NA	False	AATAAA	-12	NA	84817574	84878205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_84817690_84858812_84858922_84874210_84874384_84877717
ENSMUSG00000073633.10_1	chr1	+	850	4	FSM	ENSMUSG00000073633.10	ENSMUST00000139562.8	881	4	28	3	28	-3	multi-exon	FALSE	canonical	3	8	junction_1	23.5843639350783	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTTGTGTTCTGGTTTGT	4272	False	NA	NA	False	AATAAA	-12	NA	84844184	84878205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_84844265_84858812_84858922_84874210_84874384_84877717
ENSMUSG00000073639.7_0	chr18	+	2208	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	56	4251	-2	938	multi-exon	FALSE	canonical	3	943	junction_6	99.6015673683011	1170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTACATTTTGTGTCTTGT	5	True	NA	14	True	ATTAAA	-11	NA	6765200	6790178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_6765333_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
ENSMUSG00000073639.7_26	chr18	+	1324	1	ISM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	23714	4247	23639	942	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTTTGTGTCTTGTCTGT	NA	False	NA	18	True	ATTAAA	-15	NA	6788858	6790182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_6788900_6790200
ENSMUSG00000073640.4_0	chr18	+	467	1	FSM	ENSMUSG00000073640.4	ENSMUST00000097682.4	411	1	-34	-22	-34	22	mono-exon	FALSE	NA	NA	NA	NA	NA	397	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATTAAAAAAAAAAAAA	-1	True	NA	NA	False	NA	NA	NA	6332597	6333064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_6332600_6333100
ENSMUSG00000073643.12_0	chr1	-	2163	1	ISM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	57343	2	18230	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTGTAATTTTGTTTG	NA	False	NA	-2	True	AATAAA	-21	NA	79682143	79679980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_79680000_79682100
ENSMUSG00000073643.12_1	chr1	-	4492	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	55	4	7	-4	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	1193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTGTGTAATTTTGTT	NA	False	NA	-4	True	AATAAA	-19	NA	79739431	79679982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
ENSMUSG00000073652.11_3	chr1	+	579	2	NIC	ENSMUSG00000073652.11	novel	826	3	NA	NA	4	-13	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGACTATTGTGATAGAGG	NA	False	NA	NA	False	AGTAAA	-15	NA	71691999	71696603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_71692179_71696203
ENSMUSG00000073652.11_7	chr1	+	435	2	ISM	ENSMUSG00000073652.11	ENSMUST00000097699.3	826	3	511	17	9	-17	3prime_fragment	FALSE	canonical	3	20	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATAGACTATTGTGATA	NA	False	NA	NA	False	AGTAAA	-11	NA	71692506	71696599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_71692546_71696203
ENSMUSG00000073664.12_16	chr1	+	4311	1	ISM	ENSMUSG00000073664.12	ENSMUST00000160834.8	15731	55	153413	6	50077	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTATTTGGTTTGTAGTT	NA	False	NA	NA	False	AATAAA	-16	NA	60373170	60377481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_60373200_60377500
ENSMUSG00000073664.12_17	chr1	+	8864	55	FSM	ENSMUSG00000073664.12	ENSMUST00000160834.8	15731	55	2	6865	2	-3	multi-exon	TRUE	canonical	1	1	junction_10	5.85232065632702	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATTTGAGAGATGTGGC	NA	False	NA	NA	False	AATAAA	-19	NA	60219759	60370622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_60219845_60220621_60220914_60233662_60233755_60234173_60234336_60239263_60239346_60240022_60240151_60245492_60245576_60256354_60256441_60261225_60261533_60263783_60263891_60269760_60269845_60273955_60274055_60274139_60274721_60275529_60275663_60276255_60276376_60277730_60278035_60281697_60281784_60283952_60284043_60286774_60286944_60287521_60287656_60290193_60290354_60290462_60290566_60292510_60292668_60294052_60294212_60296588_60296749_60297808_60297898_60299391_60299953_60300568_60300745_60303437_60303592_60304040_60304170_60306917_60307224_60307541_60307692_60309430_60309589_60311291_60311417_60316283_60316411_60317071_60317221_60317825_60317960_60318857_60318960_60320405_60320502_60320983_60321109_60323141_60323283_60326469_60326601_60329073_60329184_60330992_60331111_60332025_60332124_60335037_60335155_60344433_60344524_60349362_60349473_60350085_60350259_60351309_60351405_60358475_60358593_60358829_60358992_60367218_60367368_60368485_60368622_60370049
ENSMUSG00000073664.12_2	chr1	+	301	2	ISM	ENSMUSG00000073664.12	ENSMUST00000160834.8	15731	55	-24	156676	-24	-4246	5prime_fragment	FALSE	canonical	3	24	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAACCGTCTTTTTGAGG	NA	False	NA	NA	False	AATAAA	-16	NA	60219733	60220811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_60219845_60220621
ENSMUSG00000073664.12_20	chr1	+	1257	4	ISM	ENSMUSG00000073664.12	ENSMUST00000160834.8	15731	55	7	142521	7	9909	5prime_fragment	FALSE	canonical	3	9	junction_2	6.34209919681348	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCAACAGAATTCTACCT	NA	False	NA	NA	False	NA	NA	NA	60219764	60234966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_60219845_60220621_60220914_60233662_60233755_60234173
ENSMUSG00000073664.12_24	chr1	+	8644	11	ISM	ENSMUSG00000073664.12	ENSMUST00000162291.8	5000	31	32588	-6856	8967	-6	3prime_fragment	FALSE	canonical	2	5	junction_8	6.93469537903432	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTATTTGGTTTGTAGTT	NA	False	NA	NA	False	AATAAA	-16	NA	60332060	60377481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_60332124_60335037_60335155_60344433_60344524_60349362_60349473_60350085_60350259_60351309_60351405_60358475_60358593_60358829_60358992_60367218_60367368_60368485_60368622_60370049
ENSMUSG00000073676.5_0	chr1	+	510	4	FSM	ENSMUSG00000073676.5	ENSMUST00000075242.7	774	4	195	69	13	-69	multi-exon	FALSE	canonical	3	7281	junction_2	538.928154354136	1551	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATTGTCTCTGACCTTT	NA	False	NA	33	True	AATAAA	-21	NA	55127485	55130397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_55127572_55128209_55128375_55129871_55129962_55130228
ENSMUSG00000073678.5_0	chr1	-	4380	1	ISM	ENSMUSG00000073678.5	ENSMUST00000097739.5	10583	27	80291	18	52055	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCACATTTGGTACAAAGA	NA	False	NA	-15	True	AATAAA	-11	NA	54516550	54512170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_54512200_54516600
ENSMUSG00000073678.5_1	chr1	-	4880	27	FSM	ENSMUSG00000073678.5	ENSMUST00000097739.5	10583	27	2	5701	2	-5701	multi-exon	TRUE	canonical	3	24	junction_18	5.36548800562088	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAACAATATTTTTGTCTG	NA	False	NA	NA	False	ATTAAA	-14	NA	54596839	54517853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_54520004_54521010_54521116_54525628_54525817_54529379_54529431_54531187_54531324_54532367_54532566_54533959_54534051_54536692_54536787_54549186_54549226_54550552_54550662_54551059_54551127_54551755_54551808_54551930_54552005_54553995_54554072_54560450_54560529_54563474_54563527_54564526_54564574_54567670_54567755_54569275_54569332_54570012_54570119_54571180_54571248_54572577_54572631_54575113_54575272_54582196_54582369_54587097_54587274_54590135_54590290_54596592
ENSMUSG00000073678.5_13	chr1	-	6680	13	ISM	ENSMUSG00000073678.5	ENSMUST00000097739.5	10583	27	9	43061	9	8229	5prime_fragment	FALSE	canonical	3	24	junction_4	6.03404691912668	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATCTTAA	NA	False	NA	NA	False	NA	NA	NA	54596832	54555213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_54560529_54563474_54563527_54564526_54564574_54567670_54567755_54569275_54569332_54570012_54570119_54571180_54571248_54572577_54572631_54575113_54575272_54582196_54582369_54587097_54587274_54590135_54590290_54596592
ENSMUSG00000073684.14_1	chr4	+	1044	4	FSM	ENSMUSG00000073684.14	ENSMUST00000178473.8	1076	4	28	4	5	0	multi-exon	FALSE	canonical	3	113	junction_1	46.5784881201135	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTTTGTTTCCTTCATA	NA	False	NA	4	True	NA	NA	NA	155334450	155341140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155334520_155334962_155335108_155335212_155335494_155340591
ENSMUSG00000073684.14_2	chr4	+	1380	3	FSM	ENSMUSG00000073684.14	ENSMUST00000097747.9	1479	3	98	1	98	0	multi-exon	FALSE	canonical	3	207	junction_2	4.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTTTGTTTCCTTCATA	NA	False	NA	4	True	NA	NA	NA	155334557	155341140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155335108_155335212_155335494_155340591
ENSMUSG00000073684.14_3	chr4	+	1009	4	FSM	ENSMUSG00000073684.14	ENSMUST00000105627.8	710	4	1	-300	1	0	multi-exon	FALSE	canonical	2	17	junction_1	91.7617688485909	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTTTGTTTCCTTCATA	NA	False	NA	4	True	NA	NA	NA	155334446	155341140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155334520_155335001_155335108_155335212_155335494_155340591
ENSMUSG00000073700.4_0	chr4	+	3871	4	FSM	ENSMUSG00000073700.4	ENSMUST00000097773.4	3986	4	112	3	112	-3	multi-exon	FALSE	canonical	3	100	junction_1	3.39934634239519	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCTGGGTGTCATGGCC	6510	False	NA	10	True	AATAAA	-10	NA	152093371	152102134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_152094421_152096756_152097163_152098763_152098837_152099791
ENSMUSG00000073700.4_1	chr4	+	3773	5	NNC	ENSMUSG00000073700.4	novel	3986	4	NA	NA	111	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	45.4175076374739	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCTGGGTGTCATGGCC	6509	False	NA	10	True	AATAAA	-10	NA	152093370	152102134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_152094421_152096756_152097163_152098763_152098837_152099791_152101433_152101531
ENSMUSG00000073700.4_12	chr4	+	3808	5	NNC	ENSMUSG00000073700.4	novel	3986	4	NA	NA	111	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	45.4175076374739	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCTGGGTGTCATGGCC	6509	False	NA	10	True	AATAAA	-10	NA	152093370	152102134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_152094421_152096756_152097163_152098763_152098837_152099791_152101301_152101364
ENSMUSG00000073700.4_58	chr4	+	1907	1	ISM	ENSMUSG00000073700.4	ENSMUST00000097773.4	3986	4	6968	3	6968	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCTGGGTGTCATGGCC	3468	False	NA	10	True	AATAAA	-10	NA	152100227	152102134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_152100200_152102100
ENSMUSG00000073702.12_0	chr1	+	463	5	FSM	ENSMUSG00000073702.12	ENSMUST00000086535.12	1049	5	41	545	5	0	multi-exon	FALSE	canonical	3	7651	junction_1	2133.80345568658	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39406963	39410447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUSG00000073702.12_16	chr1	+	245	3	FSM	ENSMUSG00000073702.12	ENSMUST00000191855.2	468	3	223	0	223	0	multi-exon	FALSE	canonical	3	8615	junction_2	1847	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39409153	39410447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_39409221_39410034_39410148_39410382
ENSMUSG00000073702.12_5	chr1	+	488	5	FSM	ENSMUSG00000073702.12	ENSMUST00000178079.8	487	5	1	-2	1	0	multi-exon	FALSE	canonical	3	1086	junction_1	4596.75456164455	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39407010	39410447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_39407088_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUSG00000073702.12_7	chr1	+	584	4	FSM	ENSMUSG00000073702.12	ENSMUST00000179954.8	630	4	47	-1	47	0	multi-exon	FALSE	canonical	3	8615	junction_3	1758.8270712798	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39407056	39410447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUSG00000073705.11_12	chr4	-	873	5	FSM	ENSMUSG00000073705.11	ENSMUST00000176124.8	518	5	-10	-345	2	109	multi-exon	FALSE	canonical	3	8	junction_4	158.113883008419	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCAGCTGCTGTGGCTTC	NA	False	NA	-35	True	AATAAA	-18	NA	149222032	149212887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216715_149216890_149221932
ENSMUSG00000073705.11_17	chr4	-	2320	4	NIC	ENSMUSG00000073705.11	novel	1110	5	NA	NA	-2	-151	intron_retention	FALSE	canonical	3	344	junction_2	45.3455865793158	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCGGCTGCTGTGGCTTC	NA	False	NA	47	True	AATAAA	-18	NA	149222028	149212805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_149213386_149214609_149216130_149216715_149216840_149221932
ENSMUSG00000073705.11_7	chr4	-	825	5	FSM	ENSMUSG00000073705.11	ENSMUST00000030813.10	1110	5	52	233	0	109	multi-exon	FALSE	canonical	3	344	junction_3	40.8923892674419	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCAGCTGCTGTGGCTTC	NA	False	NA	-35	True	AATAAA	-18	NA	149222034	149212887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
ENSMUSG00000073705.11_9	chr4	-	791	5	FSM	ENSMUSG00000073705.11	ENSMUST00000177408.2	689	5	7	-109	3	109	multi-exon	FALSE	canonical	3	47	junction_3	159.066809863026	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCAGCTGCTGTGGCTTC	NA	False	NA	-35	True	AATAAA	-18	NA	149222019	149212887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216734_149216840_149221932
ENSMUSG00000073725.9_1	chr1	+	1922	16	FSM	ENSMUSG00000073725.9	ENSMUST00000191471.7	4453	16	112	2419	3	636	multi-exon	FALSE	canonical	3	113	junction_9	21.4185796810983	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATTCCCTTTGTTGCTT	NA	False	NA	NA	False	ATTAAA	-13	NA	24717822	24802110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24750592_24750682_24753989_24754064_24767626_24767753_24770827_24770981_24782963_24783029_24783336_24783440_24783946_24784052_24785885_24786036_24787880_24787960_24801272_24801365_24801703
ENSMUSG00000073725.9_13	chr1	+	3328	1	ISM	ENSMUSG00000073725.9	ENSMUST00000095062.10	5228	16	84040	8	18093	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCAAGTGTTTGAGTTG	NA	False	NA	5	True	ATTAAA	-17	NA	24802046	24805374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_24802000_24805400
ENSMUSG00000073725.9_2	chr1	+	2453	16	NNC	ENSMUSG00000073725.9	novel	4453	16	NA	NA	4	1171	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	38.5555875760354	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCAGCTAGGACTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	24717823	24802645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24750592_24750682_24753992_24754064_24767626_24767753_24770827_24770981_24782963_24783029_24783336_24783440_24783946_24784052_24785885_24786036_24787880_24787960_24801272_24801365_24801703
ENSMUSG00000073728.11_0	chr4	+	2104	3	NIC	ENSMUSG00000073728.11	novel	675	4	NA	NA	129	-7	intron_retention	FALSE	canonical	3	10	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATCAAAAACTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	141811411	141815356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_141813043_141813690_141813870_141815062
ENSMUSG00000073728.11_1	chr4	+	3436	2	FSM	ENSMUSG00000073728.11	ENSMUST00000153023.2	3440	2	-10	14	-10	-7	multi-exon	FALSE	canonical	3	10	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATCAAAAACTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	141811272	141815356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_141813043_141813690
ENSMUSG00000073728.11_4	chr4	+	1580	4	FSM	ENSMUSG00000073728.11	ENSMUST00000139653.2	675	4	-886	-19	-2	-3	multi-exon	FALSE	canonical	3	10	junction_1	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACTAAGAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	141811280	141815407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_141812286_141812991_141813043_141813690_141813870_141815062
ENSMUSG00000073733.5_1	chr4	+	2122	6	FSM	ENSMUSG00000073733.5	ENSMUST00000097813.3	985	6	39	-1176	39	1176	multi-exon	FALSE	canonical	2	5	junction_2	1.26491106406735	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140941305	140948635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_140941375_140941633_140941784_140944562_140944716_140945415_140945541_140945848_140945986_140947147
ENSMUSG00000073758.11_0	chr4	-	2059	15	NIC	ENSMUSG00000073758.11	novel	2384	16	NA	NA	233	-1	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	4.14839531306617	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCAGTCTGGTCCTTGTG	1371	False	NA	-1	True	AGTAAA	-20	NA	126057051	126044395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126044590_126044669_126044728_126044809_126045667_126045816_126045912_126045998_126046052_126046133_126046228_126054260_126054304_126055127_126055215_126055315_126055417_126055527_126055574_126055760_126055817_126056245_126056365_126056594_126056659_126056758_126056917_126057017
ENSMUSG00000073758.11_2	chr4	-	2370	16	FSM	ENSMUSG00000073758.11	ENSMUST00000097891.4	2384	16	13	1	13	-1	multi-exon	FALSE	canonical	2	5	junction_2	4.1505019776729	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCAGTCTGGTCCTTGTG	1151	False	NA	-1	True	AGTAAA	-20	NA	126057271	126044395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_126044590_126044669_126044728_126044809_126045667_126045816_126045912_126045998_126046052_126046133_126046228_126054260_126054304_126055127_126055215_126055315_126055417_126055527_126055574_126055760_126055817_126055968_126056060_126056245_126056365_126056594_126056659_126056758_126056917_126057017
ENSMUSG00000073758.11_3	chr4	-	556	2	NIC	ENSMUSG00000073758.11	novel	1884	10	NA	NA	11223	-1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCAGTCTGGTCCTTGTG	NA	False	NA	-1	True	AGTAAA	-20	NA	126045171	126044395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_126044590_126044809
ENSMUSG00000073771.12_1	chr4	-	1172	2	FSM	ENSMUSG00000073771.12	ENSMUST00000153303.2	451	2	108	-829	108	0	multi-exon	FALSE	canonical	3	31	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGAATATTTGTATTC	NA	False	NA	-24	True	NA	NA	NA	116978354	116977073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116978059_116978167
ENSMUSG00000073771.12_10	chr4	-	1475	1	ISM	ENSMUSG00000073771.12	ENSMUST00000153924.8	1956	4	1632	5	567	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGCTTTAATGTCAGCA	NA	False	NA	-19	True	NA	NA	NA	116977895	116976420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_116976400_116977900
ENSMUSG00000073771.12_11	chr4	-	3798	7	ISM	ENSMUSG00000073771.12	ENSMUST00000183310.2	1620	8	-39	-951	1	-5	intron_retention	FALSE	canonical	3	21	junction_6	3.63623737154524	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGCTTTAATGTCAGCA	9708	False	NA	-19	True	NA	NA	NA	116982854	116976420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_116978059_116978167_116978294_116978394_116978527_116978610_116978680_116979415_116979476_116980925_116980980_116981135
ENSMUSG00000073771.12_12	chr4	-	2641	8	FSM	ENSMUSG00000073771.12	ENSMUST00000183310.2	1620	8	-70	-951	-30	-5	multi-exon	FALSE	canonical	2	11	junction_7	6.73401357108153	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGCTTTAATGTCAGCA	9677	False	NA	-19	True	NA	NA	NA	116982885	116976420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_116978059_116978167_116978294_116978394_116978527_116978610_116978680_116979415_116979476_116980925_116980980_116981135_116981338_116982525
ENSMUSG00000073771.12_3	chr4	-	1719	2	ISM	ENSMUSG00000073771.12	ENSMUST00000153924.8	1956	4	1052	5	-13	-5	3prime_fragment	FALSE	canonical	3	41	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGCTTTAATGTCAGCA	NA	False	NA	-19	True	NA	NA	NA	116978475	116976420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_116978059_116978394
ENSMUSG00000073771.12_5	chr4	-	3955	6	ISM	ENSMUSG00000073771.12	ENSMUST00000183310.2	1620	8	-40	-951	0	-5	intron_retention	FALSE	canonical	3	25	junction_2	2.28035085019828	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGCTTTAATGTCAGCA	9707	False	NA	-19	True	NA	NA	NA	116982855	116976420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_116978059_116978167_116978294_116978394_116978527_116978610_116978680_116979415_116979476_116980925
ENSMUSG00000073771.12_6	chr4	-	2424	7	NIC	ENSMUSG00000073771.12	novel	1620	8	NA	NA	-15	-5	combination_of_known_junctions	FALSE	canonical	3	11	junction_6	7.02376916856849	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGCTTTAATGTCAGCA	9692	False	NA	-19	True	NA	NA	NA	116982870	116976420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_116978059_116978167_116978294_116978394_116978527_116978610_116978680_116979415_116979476_116980925_116980980_116982525
ENSMUSG00000073775.5_0	chr4	+	1549	1	FSM	ENSMUSG00000073775.5	ENSMUST00000102738.4	1629	1	73	7	73	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTACCTGCTGGTCTCT	NA	False	NA	2	True	AATAAA	-8	NA	108705054	108706603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_108705100_108706600
ENSMUSG00000073779.8_0	chr4	-	3181	4	NIC	ENSMUSG00000073779.8	novel	3078	3	NA	NA	-18	-8	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	1.63299316185545	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACCCCACCTGTGTCCCT	4040	False	NA	NA	False	NA	NA	NA	107680189	107663237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_107666035_107667959_107668144_107673123_107673265_107680130
ENSMUSG00000073779.8_1	chr4	-	1306	1	ISM	ENSMUSG00000073779.8	ENSMUST00000097930.2	2991	2	3602	8	3602	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACCCCACCTGTGTCCCT	NA	False	NA	NA	False	NA	NA	NA	107664543	107663237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_107663200_107664500
ENSMUSG00000073779.8_3	chr4	-	3094	3	NIC	ENSMUSG00000073779.8	novel	3078	3	NA	NA	-5093	-10	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	1	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTACCCCACCTGTGTCC	7733	False	NA	NA	False	NA	NA	NA	107673238	107663239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_107666035_107667959_107668144_107673123
ENSMUSG00000073791.14_1	chr4	+	2167	14	FSM	ENSMUSG00000073791.14	ENSMUST00000136874.4	2121	14	-53	7	2	0	multi-exon	FALSE	canonical	3	6	junction_1	5.10481846862679	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTATGTGACTGTCTTG	2022	False	NA	NA	False	AATACA	-12	NA	99717683	99769978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_99717792_99719629_99719818_99731496_99731709_99732648_99732736_99735289_99735486_99735908_99736028_99746056_99746199_99754598_99754709_99757733_99757892_99758840_99758975_99761882_99762032_99766776_99766987_99768120_99768229_99769732
ENSMUSG00000073791.14_3	chr4	+	2165	14	NIC	ENSMUSG00000073791.14	novel	2319	14	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	4.74933816628712	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTATGTGACTGTCTTG	2027	False	NA	NA	False	AATACA	-12	NA	99717688	99769978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_99717792_99719626_99719818_99731496_99731709_99732648_99732736_99735289_99735486_99735908_99736028_99746056_99746199_99754598_99754709_99757733_99757892_99758840_99758975_99761882_99762032_99766776_99766987_99768120_99768229_99769732
ENSMUSG00000073792.12_0	chr4	+	3068	15	FSM	ENSMUSG00000073792.12	ENSMUST00000097961.9	3079	15	5	6	5	-6	multi-exon	FALSE	non_canonical	0	0	junction_7	55.2805922322746	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGCCTTGTTTGCGTGTA	NA	False	NA	12	True	ATTAAA	-12	NA	99603906	99651691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
ENSMUSG00000073792.12_10	chr4	+	2838	13	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-15	-6	combination_of_known_splicesites	FALSE	canonical	3	10	junction_6	56.4121736270934	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGCCTTGTTTGCGTGTA	NA	False	NA	12	True	ATTAAA	-12	NA	99603885	99651691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
ENSMUSG00000073792.12_45	chr4	+	1625	1	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	42681	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGTTTGCGTGTATTT	NA	False	NA	15	True	ATTAAA	-15	NA	99650069	99651694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_99650100_99651700
ENSMUSG00000073792.12_6	chr4	+	2882	14	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	5	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	57.0281774016273	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGCCTTGTTTGCGTGTA	NA	False	NA	12	True	ATTAAA	-12	NA	99603906	99651691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
ENSMUSG00000073792.12_9	chr4	+	2549	10	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-3	-9	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	60.5042596194579	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGACTAGCCTTGTTTGCGT	NA	False	NA	9	True	ATTAAA	-9	NA	99603909	99651688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
ENSMUSG00000073802.6_0	chr4	-	1317	2	FSM	ENSMUSG00000073802.6	ENSMUST00000097981.6	1390	2	49	24	49	-24	multi-exon	FALSE	canonical	3	16	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAAATTTAAAG	NA	False	NA	NA	False	NA	NA	NA	89229227	89224559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_89225552_89228902
ENSMUSG00000073838.11_0	chr7	+	1675	10	FSM	ENSMUSG00000073838.11	ENSMUST00000098048.6	1679	10	0	4	0	-4	multi-exon	FALSE	canonical	3	611	junction_6	33.4490583749803	497	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACTCAGCTTGTCTTGTG	NA	False	NA	-4	True	AATAAA	-13	NA	126086532	126089895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
ENSMUSG00000073856.12_0	chr7	+	2887	1	FSM	ENSMUSG00000073856.12	ENSMUST00000208658.2	2891	1	1	3	1	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCGTAGTGGTTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	118454975	118457862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_118455000_118457900
ENSMUSG00000073888.14_0	chr4	-	2804	5	NIC	ENSMUSG00000073888.14	novel	590	6	NA	NA	3	-1	intron_retention	FALSE	canonical	3	80	junction_4	9.06917857360853	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTCCAAAAACTTCCGTC	31	False	NA	-7	True	AATAAA	-16	NA	41774139	41769478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_41769655_41769843_41769977_41771137_41773525_41773735_41773804_41774099
ENSMUSG00000073888.14_2	chr4	-	2705	3	FSM	ENSMUSG00000073888.14	ENSMUST00000108035.8	731	3	-1986	12	4	-1	multi-exon	FALSE	canonical	3	81	junction_1	9.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTCCAAAAACTTCCGTC	637	False	NA	-7	True	AATAAA	-16	NA	41773533	41769478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41769655_41769843_41769977_41771137
ENSMUSG00000073888.14_4	chr4	-	3022	4	NIC	ENSMUSG00000073888.14	novel	590	6	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	80	junction_3	9.20144916122817	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTCCAAAAACTTCCGTC	24	False	NA	-7	True	AATAAA	-16	NA	41774146	41769478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_41769655_41769843_41769977_41771137_41773804_41774099
ENSMUSG00000073888.14_5	chr4	-	573	6	FSM	ENSMUSG00000073888.14	ENSMUST00000108037.9	590	6	3	14	3	-3	multi-exon	FALSE	canonical	3	53	junction_3	16.7020956768904	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATCTCCAAAAACTTCCG	31	False	NA	-9	True	AATAAA	-14	NA	41774139	41769480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464_41773525_41773735_41773804_41774099
ENSMUSG00000073888.14_6	chr4	-	2774	4	NIC	ENSMUSG00000073888.14	novel	841	5	NA	NA	131	-5	intron_retention	FALSE	canonical	3	81	junction_1	8.33999733546454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTTCCGTCTCTTTTA	364	False	NA	0	True	AATAAA	-23	NA	41773806	41769471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_41769655_41769843_41769977_41771137_41773525_41773735
ENSMUSG00000073889.11_8	chr4	+	1725	13	FSM	ENSMUSG00000073889.11	ENSMUST00000098132.11	2009	13	281	3	-21	-3	multi-exon	FALSE	canonical	1	6	junction_1	3.12138680005467	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATTGTCGTCTAATGTT	1	True	NA	1	True	AATAAA	-17	NA	41760476	41769471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_41760552_41763581_41763682_41763824_41763886_41764708_41764879_41765006_41765122_41765274_41765308_41765385_41765553_41766110_41766275_41767459_41767602_41767945_41768072_41768168_41768266_41768492_41768576_41769079
ENSMUSG00000073894.2_0	chr7	+	1470	1	FSM	ENSMUSG00000073894.2	ENSMUST00000098135.2	1472	1	2	0	2	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1257	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGCTGCGTAGTAGTCT	NA	False	NA	20	True	NA	NA	NA	106808653	106810123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_106808700_106810100
ENSMUSG00000073910.11_0	chr4	-	3069	1	ISM	ENSMUSG00000073910.11	ENSMUST00000102975.10	6030	4	205331	11	205331	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAAAACCATCTTCTAGT	307	False	NA	NA	False	AATAAA	-44	NA	34952153	34949084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_34949100_34952200
ENSMUSG00000073910.11_1	chr4	-	2378	4	FSM	ENSMUSG00000073910.11	ENSMUST00000102975.10	6030	4	19	3633	19	-3633	multi-exon	FALSE	canonical	3	22	junction_3	2.86744175568088	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATGAATGTATTCTTAC	-13	True	NA	NA	False	AATAAA	-23	NA	35157465	34952706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_34954048_34985915_34986119_35083769_35084390_35157251
ENSMUSG00000073910.11_4	chr4	-	1753	3	NIC	ENSMUSG00000073910.11	novel	6030	4	NA	NA	22	-3635	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	14.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGACATGAATGTATTCTT	-10	True	NA	NA	False	AATAAA	-21	NA	35157462	34952708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_34954048_34985915_34986119_35157251
ENSMUSG00000073968.5_0	chr7	-	3597	6	NIC	ENSMUSG00000073968.5	novel	2388	7	NA	NA	1	2	intron_retention	FALSE	canonical	2	5	junction_5	1.32664991614216	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCACGAGTCTGCCTGTC	NA	False	NA	NA	False	ATTAAA	-30	NA	102336476	102326786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_102328045_102328242_102328344_102328880_102328904_102329343_102330966_102333254_102333719_102336347
ENSMUSG00000073968.5_1	chr7	-	2372	7	FSM	ENSMUSG00000073968.5	ENSMUST00000082175.7	2388	7	5	11	5	-4	multi-exon	FALSE	canonical	2	5	junction_6	1.21335164821342	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAATCCACAGATCAC	NA	False	NA	NA	False	ATTAAA	-17	NA	102336529	102326799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_102328045_102328242_102328344_102328880_102328904_102329343_102329605_102330869_102330966_102333254_102333719_102336347
ENSMUSG00000073968.5_3	chr7	-	1915	6	ISM	ENSMUSG00000073968.5	ENSMUST00000082175.7	2388	7	3097	5	2970	2	3prime_fragment	FALSE	canonical	2	7	junction_1	0.8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCACAGATCACGAGTCT	NA	False	NA	NA	False	ATTAAA	-23	NA	102333437	102326793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_102328045_102328242_102328344_102328880_102328904_102329343_102329605_102330869_102330966_102333254
ENSMUSG00000073968.5_5	chr7	-	1211	1	FSM	ENSMUSG00000073968.5	ENSMUST00000210406.2	632	1	567	-1146	567	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATCACGAGTCTGCCTG	NA	False	NA	NA	False	ATTAAA	-28	NA	102327999	102326788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_102326800_102328000
ENSMUSG00000073982.12_0	chr7	-	1247	2	FSM	ENSMUSG00000073982.12	ENSMUST00000098230.11	1269	2	18	4	-17	-4	multi-exon	FALSE	canonical	3	11	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCCCTGGCTCCTCCCTA	6378	False	NA	-6	True	AATAAA	-14	NA	101899312	101888333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_101889520_101899251
ENSMUSG00000073987.5_0	chr4	+	1261	9	FSM	ENSMUSG00000073987.5	ENSMUST00000098242.4	1965	9	57	647	57	-647	multi-exon	FALSE	canonical	3	51	junction_6	14.9080515158756	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATACTTTGTCTGTGA	32	False	NA	NA	False	AATACA	-9	NA	20042108	20066103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_20042283_20046202_20046315_20049791_20049843_20052663_20052749_20054063_20054203_20057936_20058044_20058138_20058230_20063998_20064137_20065739
ENSMUSG00000073987.5_5	chr4	+	4858	2	ISM	ENSMUSG00000073987.5	ENSMUST00000098242.4	1965	9	17584	654	17584	-654	3prime_fragment	FALSE	canonical	3	76	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTGAAAATATACTTTG	NA	False	NA	NA	False	AATACA	-2	NA	20059635	20066096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_20064137_20065739
ENSMUSG00000073988.14_1	chr4	+	2546	5	FSM	ENSMUSG00000073988.14	ENSMUST00000121491.8	2862	5	311	5	-39	-5	multi-exon	FALSE	canonical	3	35	junction_1	15.2212844398888	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACCATGGTGTTTATAT	328	False	NA	16	True	AATAAA	-12	NA	20008317	20030465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_20008347_20014630_20014785_20021191_20021386_20023784_20023896_20028407
ENSMUSG00000073988.14_5	chr4	+	2784	5	FSM	ENSMUSG00000073988.14	ENSMUST00000098244.2	3053	5	-51	320	20	-5	multi-exon	FALSE	canonical	3	28	junction_1	18.1934053986603	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACCATGGTGTTTATAT	387	False	NA	16	True	AATAAA	-12	NA	20008376	20030465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_20008644_20014630_20014785_20021191_20021386_20023784_20023896_20028407
ENSMUSG00000073988.14_6	chr4	+	2515	4	ISM	ENSMUSG00000073988.14	ENSMUST00000098244.2	3053	5	6202	323	6202	-8	3prime_fragment	FALSE	canonical	3	64	junction_3	3.77123616632825	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACAAACCATGGTGTTTA	5243	False	NA	13	True	AATAAA	-9	NA	20014629	20030462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_20014785_20021191_20021386_20023784_20023896_20028407
ENSMUSG00000073988.14_8	chr4	+	2684	1	NIC	ENSMUSG00000073988.14	novel	2862	5	NA	NA	19354	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACCATGGTGTTTATAT	NA	False	NA	16	True	AATAAA	-12	NA	20027781	20030465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_20027800_20030500
ENSMUSG00000074001.4_0	chr9	+	1426	6	FSM	ENSMUSG00000074001.4	ENSMUST00000098272.4	2370	6	579	365	579	-365	multi-exon	FALSE	canonical	0	0	junction_2	0.489897948556636	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	7534	False	NA	NA	False	NA	NA	NA	121607335	121612519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_121607994_121608988_121609150_121609437_121609546_121609637_121609824_121611595_121611743_121612353
ENSMUSG00000074024.6_2	chr7	-	4713	1	FSM	ENSMUSG00000074024.6	ENSMUST00000182578.2	3832	1	41	-922	32	922	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACACATGTCAAATTA	NA	False	NA	NA	False	TTTAAA	-37	NA	92390635	92385922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_92385900_92390600
ENSMUSG00000074030.4_0	chr8	-	4576	1	FSM	ENSMUSG00000074030.4	ENSMUST00000098312.4	4598	1	15	7	15	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGAAATGGAAGTAGAGAA	NA	False	NA	-31	True	AATAAA	-14	NA	125624429	125619853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_125619900_125624400
ENSMUSG00000074039.11_1	chr9	+	352	3	ISM	ENSMUSG00000074039.11	ENSMUST00000124664.8	1285	4	-48	8175	-48	-2110	5prime_fragment	FALSE	canonical	3	21	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAGGTATGTATGAA	NA	False	NA	NA	False	ATTAAA	-10	NA	114197322	114198122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_114197553_114197911_114197968_114198056
ENSMUSG00000074039.11_2	chr9	+	1265	4	FSM	ENSMUSG00000074039.11	ENSMUST00000124664.8	1285	4	-27	47	-27	-47	multi-exon	FALSE	canonical	3	8	junction_3	6.12825877028341	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAGAAAACAACAAACA	NA	False	NA	NA	False	NA	NA	NA	114197343	114206250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_114197553_114197911_114197968_114198056_114198132_114205325
ENSMUSG00000074052.8_0	chr8	+	1987	1	FSM	ENSMUSG00000074052.8	ENSMUST00000181944.2	1992	1	0	5	0	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAACCGTTGGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	122634571	122636558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_122634600_122636600
ENSMUSG00000074064.7_0	chr8	+	2086	5	FSM	ENSMUSG00000074064.7	ENSMUST00000098367.5	2128	5	25	17	5	-2	multi-exon	TRUE	canonical	0	0	junction_4	28.3317401512862	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACACCTTTAAGTCTACTT	1494	False	NA	2	True	ATTAAA	-15	NA	120121641	120137824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120122210_120128219_120128333_120129172_120129330_120134294_120134445_120136726
ENSMUSG00000074071.12_10	chr7	+	2532	7	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-15	-29	combination_of_known_splicesites	FALSE	canonical	2	10	junction_3	52.588813766174	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGACCTTCCACATGT	NA	False	NA	24	True	NA	NA	NA	67925727	68012806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_67925790_67950580_67950712_67954299_67954400_67999981_68000165_68003356_68003492_68007932_68008037_68010989
ENSMUSG00000074071.12_12	chr7	+	2610	8	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-7	-29	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	44.7788215247215	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGACCTTCCACATGT	NA	False	NA	24	True	NA	NA	NA	67925735	68012806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67999981_68000165_68003356_68003492_68007932_68008037_68010989
ENSMUSG00000074071.12_15	chr7	+	2688	8	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-7	-29	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	43.556203428936	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGACCTTCCACATGT	NA	False	NA	24	True	NA	NA	NA	67925735	68012806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_67925790_67950580_67950712_67971567_67971654_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
ENSMUSG00000074071.12_2	chr7	+	2807	9	FSM	ENSMUSG00000074071.12	ENSMUST00000210558.2	2815	9	-26	34	-26	-29	multi-exon	FALSE	canonical	3	103	junction_5	20.4328167417025	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGACCTTCCACATGT	NA	False	NA	24	True	NA	NA	NA	67925716	68012806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
ENSMUSG00000074071.12_25	chr7	+	3703	3	ISM	ENSMUSG00000074071.12	ENSMUST00000098378.9	2776	9	51849	29	20838	-29	3prime_fragment	FALSE	canonical	3	147	junction_2	4.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGACCTTCCACATGT	3491	False	NA	24	True	NA	NA	NA	68001709	68012806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_68003492_68007932_68008037_68010989
ENSMUSG00000074071.12_27	chr7	+	1556	1	ISM	ENSMUSG00000074071.12	ENSMUST00000125685.9	2821	9	87664	34	30379	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGACCTTCCACATGT	NA	False	NA	24	True	NA	NA	NA	68011250	68012806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_68011200_68012800
ENSMUSG00000074071.12_4	chr7	+	2709	8	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-14	-29	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	51.6048565978997	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGACCTTCCACATGT	NA	False	NA	24	True	NA	NA	NA	67925728	68012806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_67925790_67950580_67950712_67954299_67954400_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
ENSMUSG00000074088.7_0	chr4	+	1545	10	FSM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	39	0	-23	0	multi-exon	FALSE	canonical	3	1067	junction_7	51.5407066738946	1019	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACCTTGTGACTTGG	NA	False	NA	22	True	ATTAAA	-23	NA	130253963	130283819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
ENSMUSG00000074093.5_0	chr7	-	1908	1	Genic_Genomic	ENSMUSG00000074093.5	novel	NA	NA	NA	NA	6633	13	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCACGTGCCTGCCTCC	NA	False	NA	-6	True	AATAAA	-30	NA	51648813	51646905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_51646900_51648800
ENSMUSG00000074093.5_1	chr7	-	2883	4	FSM	ENSMUSG00000074093.5	ENSMUST00000098414.5	3053	4	165	5	-5	-5	multi-exon	FALSE	canonical	3	84	junction_2	8.05536398239638	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGATTGGCAAGAGTTAG	NA	False	NA	-24	True	AATAAA	-12	NA	51655601	51646923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_51649526_51653093_51653208_51653682_51653734_51655485
ENSMUSG00000074102.5_0	chr9	-	3086	1	FSM	ENSMUSG00000074102.5	ENSMUST00000055843.9	6511	1	356	3069	356	764	mono-exon	FALSE	NA	NA	NA	NA	NA	437	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCGCCAGAGTCCTGGT	NA	False	NA	-11	True	AGTAAA	-25	NA	106764271	106761185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106761200_106764300
ENSMUSG00000074121.4_0	chr7	+	1452	3	FSM	ENSMUSG00000074121.4	ENSMUST00000058879.8	1963	3	-13	524	-13	-524	multi-exon	FALSE	canonical	3	16	junction_1	4	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGGTGTTGTGGTATGTA	624	False	NA	NA	False	NA	NA	NA	45063105	45066079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45063213_45064154_45064279_45064858
ENSMUSG00000074129.15_1	chr7	-	656	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	26	365	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	3631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGGCCTGCCCT	NA	False	NA	-6	True	AATAAA	-14	NA	44778159	44775346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUSG00000074129.15_4	chr7	-	215	2	ISM	ENSMUSG00000074129.15	ENSMUST00000210792.2	464	4	660	0	318	0	3prime_fragment	FALSE	canonical	3	17594	junction_1	0	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGGCCTGCCCT	NA	False	NA	-6	True	AATAAA	-14	NA	44775643	44775346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44775457_44775538
ENSMUSG00000074129.15_5	chr7	-	806	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	8	-80	-4	0	multi-exon	FALSE	canonical	3	1166	junction_7	5527.98350879137	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGGCCTGCCCT	NA	False	NA	-6	True	AATAAA	-14	NA	44778151	44775346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
ENSMUSG00000074129.15_8	chr7	-	623	7	ISM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	1164	-80	252	0	3prime_fragment	FALSE	canonical	3	15796	junction_2	909.956409212368	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGGCCTGCCCT	NA	False	NA	-6	True	AATAAA	-14	NA	44776995	44775346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919
ENSMUSG00000074136.10_0	chr8	+	2441	1	FSM	ENSMUSG00000074136.10	ENSMUST00000098472.2	3229	1	-210	998	19	-998	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGGGGCCTCCTAGAGGA	NA	False	NA	NA	False	AATAAA	-9	NA	96533390	96535831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_96533400_96535800
ENSMUSG00000074136.10_3	chr8	+	2795	3	FSM	ENSMUSG00000074136.10	ENSMUST00000132616.2	490	3	-2248	-57	41	26	multi-exon	FALSE	canonical	2	3	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGAGAGATGCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	96533412	96548382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_96535809_96536858_96536926_96548050
ENSMUSG00000074141.14_0	chr7	+	2091	8	NIC	ENSMUSG00000074141.14	novel	2275	9	NA	NA	-12	-3	combination_of_known_splicesites	TRUE	canonical	1	2	junction_5	3.83325938999964	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCACAGGCTCACTTCCC	362	False	NA	2	True	AATAAA	-13	NA	44465798	44490225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_44465908_44481539_44481606_44483374_44483517_44486054_44486291_44486799_44486913_44488574_44488644_44488747_44488885_44489006
ENSMUSG00000074141.14_1	chr7	+	2307	9	FSM	ENSMUSG00000074141.14	ENSMUST00000118125.9	2275	9	-35	3	-26	-3	multi-exon	FALSE	canonical	0	0	junction_6	4.24079886342184	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCACAGGCTCACTTCCC	348	False	NA	2	True	AATAAA	-13	NA	44465784	44490225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44465908_44481539_44481606_44483374_44483517_44486054_44486291_44486799_44486913_44487412_44487615_44488574_44488644_44488747_44488885_44489006
ENSMUSG00000074141.14_7	chr7	+	936	1	ISM	ENSMUSG00000074141.14	ENSMUST00000118125.9	2275	9	23458	15	656	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATTTTTGTTAAACCACA	4384	False	NA	-10	True	AATAAA	-1	NA	44489277	44490213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_44489300_44490200
ENSMUSG00000074155.3_0	chr7	+	1444	6	NIC	ENSMUSG00000074155.3	novel	1239	5	NA	NA	-158	-14	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0.4	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGGAAGAACCGTGTTGATA	NA	False	NA	NA	False	AATAAA	-4	NA	43491236	43500591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_43491492_43491728_43491813_43494591_43494857_43496407_43496665_43496864_43496999_43500142
ENSMUSG00000074158.10_0	chr7	-	4994	4	FSM	ENSMUSG00000074158.10	ENSMUST00000098503.9	1976	4	-40	-2978	1	0	multi-exon	FALSE	canonical	3	68	junction_3	11.7284080571728	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATATAATCTCTTCT	NA	False	NA	-23	True	NA	NA	NA	42292011	42258949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_42263648_42265396_42265458_42265656_42265784_42291903
ENSMUSG00000074158.10_2	chr7	-	2889	1	Genic_Genomic	ENSMUSG00000074158.10	novel	NA	NA	NA	NA	3953	8	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCTCTTCTGAGAATTC	NA	False	NA	-15	True	NA	NA	NA	42261830	42258941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_42258900_42261800
ENSMUSG00000074158.10_3	chr7	-	5073	4	NNC	ENSMUSG00000074158.10	novel	1976	4	NA	NA	7	21	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	40.3567425180312	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTCTGAGTTTTTCCTC	NA	False	NA	-2	True	NA	NA	NA	42292005	42258928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_42263648_42265396_42265458_42265656_42265784_42291839
ENSMUSG00000074158.10_6	chr7	-	4871	3	FSM	ENSMUSG00000074158.10	ENSMUST00000107994.3	4868	3	-3	0	-3	0	multi-exon	FALSE	canonical	0	0	junction_2	47.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATATAATCTCTTCT	NA	False	NA	-23	True	NA	NA	NA	42292015	42258949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_42263648_42265396_42265458_42291903
ENSMUSG00000074165.11_1	chr7	+	3141	6	FSM	ENSMUSG00000074165.11	ENSMUST00000100275.10	3177	6	31	5	-2	-5	multi-exon	FALSE	canonical	3	5	junction_2	15.7733953225043	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTCATATGTGGTGAAA	NA	False	NA	-5	True	ATTAAA	-45	NA	41282985	41300297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_41283119_41284103_41284135_41292756_41292857_41296906_41297042_41297242_41297304_41297616
ENSMUSG00000074165.11_10	chr7	+	3050	5	FSM	ENSMUSG00000074165.11	ENSMUST00000140964.8	1169	5	-5	-1876	-3	-5	multi-exon	FALSE	canonical	3	10	junction_2	14.5150783669948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTCATATGTGGTGAAA	NA	False	NA	-5	True	ATTAAA	-45	NA	41282976	41300297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_41283119_41284103_41284135_41296906_41297042_41297242_41297304_41297616
ENSMUSG00000074165.11_13	chr7	+	4876	3	FSM	ENSMUSG00000074165.11	ENSMUST00000170770.2	2499	3	-2112	-265	-2112	-17	multi-exon	FALSE	canonical	3	43	junction_2	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAACAATGTGAAAACTCA	NA	False	NA	-17	True	ATTAAA	-33	NA	41294895	41300285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_41297042_41297242_41297304_41297616
ENSMUSG00000074165.11_15	chr7	+	1129	1	ISM	ENSMUSG00000074165.11	ENSMUST00000045720.14	3058	4	16188	51	2168	2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTGGTGAAAATTTTGG	NA	False	NA	2	True	TATAAA	-15	NA	41299175	41300304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_41299200_41300300
ENSMUSG00000074165.11_18	chr7	+	3040	5	NIC	ENSMUSG00000074165.11	novel	3775	6	NA	NA	11	-18	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	17.8044938147649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAACAATGTGAAAACTC	NA	False	NA	-18	True	ATTAAA	-32	NA	41282965	41300284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_41283119_41284103_41284135_41296914_41297042_41297242_41297304_41297616
ENSMUSG00000074165.11_19	chr7	+	3124	5	NIC	ENSMUSG00000074165.11	novel	3177	6	NA	NA	-1	2	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	14.5344418537486	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTGGTGAAAATTTTGG	NA	False	NA	2	True	TATAAA	-15	NA	41282978	41300304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_41283119_41292756_41292857_41296906_41297042_41297242_41297304_41297616
ENSMUSG00000074165.11_2	chr7	+	1476	6	NIC	ENSMUSG00000074165.11	novel	3177	6	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	16.5963851485798	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAATGTGGTAAGTCCTT	NA	False	NA	NA	False	NA	NA	NA	41282963	41298421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_41283119_41284103_41284324_41292756_41292857_41296906_41297042_41297242_41297304_41297616
ENSMUSG00000074165.11_6	chr7	+	3017	4	NIC	ENSMUSG00000074165.11	novel	1169	5	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	18.4028983224563	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGGTGAAAATTT	NA	False	NA	-1	True	TATAAA	-12	NA	41282982	41300301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_41283119_41296906_41297042_41297242_41297304_41297616
ENSMUSG00000074165.11_8	chr7	+	3149	6	FSM	ENSMUSG00000074165.11	ENSMUST00000098508.9	3775	6	-26	652	-5	0	multi-exon	FALSE	canonical	3	5	junction_2	16.2677595261302	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATGTGGTGAAAATTTT	NA	False	NA	0	True	TATAAA	-13	NA	41282974	41300302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_41283119_41284103_41284135_41292756_41292857_41296914_41297042_41297242_41297304_41297616
ENSMUSG00000074165.11_9	chr7	+	3001	4	FSM	ENSMUSG00000074165.11	ENSMUST00000045720.14	3058	4	6	51	6	2	multi-exon	FALSE	canonical	3	13	junction_1	14.6363322667334	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTGGTGAAAATTTTGG	NA	False	NA	2	True	TATAAA	-15	NA	41282993	41300304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_41283119_41296914_41297042_41297242_41297304_41297616
ENSMUSG00000074166.8_1	chr7	-	1856	1	ISM	ENSMUSG00000074166.8	ENSMUST00000098509.5	3411	4	19156	5	1832	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACAAATTTGCTTTTTTT	NA	False	NA	-5	True	AATAAA	-16	NA	41130158	41128302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_41128300_41130200
ENSMUSG00000074166.8_2	chr7	-	2923	4	FSM	ENSMUSG00000074166.8	ENSMUST00000098509.5	3411	4	483	5	1	-5	multi-exon	FALSE	canonical	3	38	junction_1	6.97614984548545	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACAAATTTGCTTTTTTT	NA	False	NA	-5	True	AATAAA	-16	NA	41148831	41128302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_41130924_41131989_41132051_41132256_41132384_41148717
ENSMUSG00000074166.8_4	chr7	-	2756	2	FSM	ENSMUSG00000074166.8	ENSMUST00000205995.2	1337	2	-6	-1413	-6	1413	multi-exon	FALSE	canonical	2	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	41148838	41137857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_41140493_41148717
ENSMUSG00000074166.8_5	chr7	-	1727	2	FSM	ENSMUSG00000074166.8	ENSMUST00000205634.2	637	2	19	-1109	0	-4	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTTGTTGATGGTGCTG	NA	False	NA	NA	False	NA	NA	NA	41148832	41139274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_41140887_41148717
ENSMUSG00000074170.6_1	chr7	-	1521	2	FSM	ENSMUSG00000074170.6	ENSMUST00000098513.6	5263	2	36	3706	36	-3706	multi-exon	FALSE	canonical	3	140	junction_1	0	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACTCTTTTGATTGTTA	NA	False	NA	-25	True	NA	NA	NA	37927404	37920101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_37921583_37927364
ENSMUSG00000074170.6_2	chr7	-	1483	1	NIC	ENSMUSG00000074170.6	novel	5263	2	NA	NA	5856	-3706	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACTCTTTTGATTGTTA	2757	False	NA	-25	True	NA	NA	NA	37921584	37920101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_37920100_37921600
ENSMUSG00000074171.3_0	chr8	-	1838	1	FSM	ENSMUSG00000074171.3	ENSMUST00000209493.2	1885	1	45	2	44	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGCTGTTTTTCTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	91634999	91633161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_91633200_91635000
ENSMUSG00000074182.9_0	chr3	+	1097	11	FSM	ENSMUSG00000074182.9	ENSMUST00000199033.5	1127	11	29	1	2	-1	multi-exon	TRUE	canonical	3	509	junction_1	98.0487633782293	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAAGTGCATGTTACTGC	NA	False	NA	48	True	ATTAAA	-22	NA	145281988	145309867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074182.9_1	chr3	+	1650	10	FSM	ENSMUSG00000074182.9	ENSMUST00000098534.9	2339	10	5	684	5	-2	multi-exon	FALSE	canonical	3	657	junction_9	57.8243402122986	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAAGTGCATGTTACTG	NA	False	NA	47	True	ATTAAA	-21	NA	145281991	145309866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074182.9_18	chr3	+	1161	11	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	233.890765102002	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCATGTTACTGCC	NA	False	NA	49	True	ATTAAA	-23	NA	145281991	145309868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_145282115_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074182.9_6	chr3	+	1219	11	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	227.48013100049	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAAGTGCATGTTACTGC	NA	False	NA	48	True	ATTAAA	-22	NA	145281991	145309867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_145282174_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074194.5_0	chr8	-	2724	4	FSM	ENSMUSG00000074194.5	ENSMUST00000098550.4	1587	4	-51	-1086	-51	-8	multi-exon	FALSE	canonical	3	4	junction_1	2.16024689946929	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAACAGCTGGGCATG	NA	False	NA	NA	False	NA	NA	NA	85846317	85835189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85837672_85838838_85838900_85840135_85840263_85846263
ENSMUSG00000074199.8_0	chr7	+	4010	3	FSM	ENSMUSG00000074199.8	ENSMUST00000190589.7	369	3	-3647	6	-1741	-4	multi-exon	FALSE	canonical	3	54	junction_2	12	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAAGTGGCTCCTGAATC	NA	False	NA	5	True	AATAAA	-10	NA	30485579	30490504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30489382_30489992_30490041_30490344
ENSMUSG00000074199.8_1	chr7	+	454	6	FSM	ENSMUSG00000074199.8	ENSMUST00000098559.3	470	6	2	14	2	0	multi-exon	FALSE	canonical	3	54	junction_5	10.9105453575887	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCCTGAATCTGTG	NA	False	NA	9	True	AATAAA	-14	NA	30487331	30490508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30487448_30488929_30488969_30489137_30489180_30489336_30489382_30489992_30490041_30490344
ENSMUSG00000074203.5_0	chr8	+	643	2	FSM	ENSMUSG00000074203.5	ENSMUST00000098571.5	721	2	67	11	67	-11	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAAGCCAACAGTGGT	NA	False	NA	NA	False	ATTAAA	-4	NA	85449702	85453462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_85449901_85453017
ENSMUSG00000074207.11_0	chr3	+	1329	9	FSM	ENSMUSG00000074207.11	ENSMUST00000004232.10	1492	9	155	8	-2	-8	multi-exon	FALSE	canonical	3	10	junction_3	3.01817411691241	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGAAACTGAGTTTTCTG	NA	False	NA	NA	False	AATAAA	-20	NA	137983409	137996451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_137983498_137985491_137985594_137986134_137986274_137988196_137988285_137988375_137988596_137992452_137992714_137994509_137994646_137995562_137995702_137996295
ENSMUSG00000074211.5_0	chr7	-	939	1	FSM	ENSMUSG00000074211.5	ENSMUST00000098586.5	2490	1	1542	9	1542	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAACAATCTTGTTGATT	NA	False	NA	-4	True	AATAAA	-27	NA	30021778	30020839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30020800_30021800
ENSMUSG00000074212.8_0	chr3	+	1358	8	FSM	ENSMUSG00000074212.8	ENSMUST00000090178.10	9477	8	141	7978	-71	-350	multi-exon	FALSE	canonical	3	31	junction_3	5.20204041600946	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTGGACTGTTAATGA	NA	False	NA	13	True	ATTAAA	-26	NA	137573576	137614340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_137573818_137591033_137591206_137598568_137598715_137607947_137608134_137609643_137609739_137610505_137610616_137611645_137611819_137614105
ENSMUSG00000074212.8_3	chr3	+	6977	9	NNC	ENSMUSG00000074212.8	novel	9477	8	NA	NA	2	-2084	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	13.6970571656834	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGGTGAGATGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	137573649	137620234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_137573818_137591033_137591206_137598568_137598715_137607947_137608134_137609643_137609739_137610505_137610616_137611645_137611819_137614105_137619817_137620018
ENSMUSG00000074212.8_7	chr3	+	2325	1	ISM	ENSMUSG00000074212.8	ENSMUST00000090178.10	9477	8	44377	2181	6822	-2181	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAATCTTTATCAATAATA	NA	False	NA	NA	False	AATAAA	-3	NA	137617812	137620137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_137617800_137620100
ENSMUSG00000074217.9_0	chr8	-	950	4	NNC	ENSMUSG00000074217.9	novel	1351	3	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	73.9113583212275	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGGCTTCAGTGCAAGC	7534	False	NA	-16	True	AATAAA	-15	NA	84738786	84736857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_84737122_84737339_84737402_84737769_84738350_84738742
ENSMUSG00000074217.9_1	chr8	-	976	4	NIC	ENSMUSG00000074217.9	novel	1351	3	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	68.8250600354906	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGGCTTCAGTGCAAGC	7536	False	NA	-16	True	AATAAA	-15	NA	84738784	84736857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_84737122_84737339_84737402_84737769_84738378_84738742
ENSMUSG00000074217.9_2	chr8	-	983	4	NIC	ENSMUSG00000074217.9	novel	1351	3	NA	NA	15	-8	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	63.754738385995	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGGGCTTCAGTGCAAG	7550	False	NA	-17	True	AATAAA	-14	NA	84738770	84736858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_84737122_84737339_84737402_84737769_84738400_84738742
ENSMUSG00000074217.9_3	chr8	-	1326	3	FSM	ENSMUSG00000074217.9	ENSMUST00000190457.2	1351	3	18	7	16	-7	multi-exon	FALSE	canonical	3	145	junction_2	17	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGGCTTCAGTGCAAGC	7551	False	NA	-16	True	AATAAA	-15	NA	84738769	84736857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84737122_84737339_84737402_84737769
ENSMUSG00000074217.9_4	chr8	-	1684	2	ISM	ENSMUSG00000074217.9	ENSMUST00000190457.2	1351	3	25	10	23	7	intron_retention	FALSE	canonical	3	179	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACCTGGGCTTCAGTGCA	7558	False	NA	-19	True	AATAAA	-12	NA	84738762	84736860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_84737122_84737339
ENSMUSG00000074217.9_8	chr8	-	1943	1	FSM	ENSMUSG00000080665.3	ENSMUST00000117015.3	119	1	-538	-1286	-538	1286	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGGCTTCAGTGCAAGC	7520	False	NA	-16	True	AATAAA	-15	NA	84738800	84736857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_84736900_84738800
ENSMUSG00000074218.4_1	chr7	+	340	4	FSM	ENSMUSG00000074218.4	ENSMUST00000098594.4	393	4	50	3	0	-3	multi-exon	FALSE	canonical	3	920	junction_1	139.802241279125	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCCGGCTCCAGCCTGTG	5724	False	NA	21	True	AATAAA	-22	NA	29883618	29885452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29883671_29884509_29884597_29884699_29884785_29885336
ENSMUSG00000074218.4_2	chr7	+	430	4	FSM	ENSMUSG00000074218.4	ENSMUST00000208441.2	485	4	0	55	0	-7	multi-exon	FALSE	canonical	3	51	junction_1	502.814964861716	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCAACCCGGCTCCAGCC	5724	False	NA	17	True	AATAAA	-18	NA	29883618	29885448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29883765_29884509_29884597_29884699_29884785_29885336
ENSMUSG00000074219.4_3	chr8	-	2481	3	NIC	ENSMUSG00000074219.4	novel	2798	5	NA	NA	-3	0	intron_retention	FALSE	canonical	0	0	junction_1	2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTCTCCTCTAGCCTTA	6067	False	NA	NA	False	AATAAA	-15	NA	84681837	84658957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_84661236_84662360_84662458_84681731
ENSMUSG00000074220.11_0	chr7	+	2372	5	NNC	ENSMUSG00000074220.11	novel	2117	5	NA	NA	5	263	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_4	11.4537111889553	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTACTATATGTTCTTT	5264	False	NA	NA	False	TATAAA	-18	NA	29821371	29834638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_29821502_29825192_29825267_29830125_29830253_29830956_29831050_29832690
ENSMUSG00000074220.11_2	chr7	+	2358	5	FSM	ENSMUSG00000074220.11	ENSMUST00000098596.11	2117	5	15	-256	-13	256	multi-exon	FALSE	canonical	3	29	junction_4	7.82224392358101	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGGATTGTTACTATAT	5274	False	NA	NA	False	TATAAA	-11	NA	29821381	29834631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29821502_29825192_29825267_29830125_29830253_29830956_29831050_29832687
ENSMUSG00000074220.11_26	chr7	+	3736	3	ISM	ENSMUSG00000074220.11	ENSMUST00000156543.2	730	4	5086	-3233	5086	1828	3prime_fragment	FALSE	canonical	3	29	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATCTAGTGTATGAGGT	NA	False	NA	NA	False	NA	NA	NA	29830125	29836203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_29830253_29830956_29831050_29832687
ENSMUSG00000074220.11_7	chr7	+	2394	5	NIC	ENSMUSG00000074220.11	novel	2117	5	NA	NA	5	254	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	10.5445483544816	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTGGATTGTTACTAT	5264	False	NA	NA	False	TATAAA	-9	NA	29821371	29834629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29821502_29825192_29825267_29830097_29830253_29830956_29831050_29832687
ENSMUSG00000074221.13_0	chr7	+	7169	10	NIC	ENSMUSG00000074221.13	novel	4005	10	NA	NA	5	-9	combination_of_known_junctions	FALSE	canonical	3	169	junction_6	29.7138617525039	274	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACGTACGGTCAAGACT	NA	False	NA	10	True	AATAAA	-13	NA	29683384	29727698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473_29688533_29697174_29697302_29697539_29697636_29713264_29713315_29714490_29714615_29716591_29716688_29721642
ENSMUSG00000074221.13_3	chr7	+	7168	10	NIC	ENSMUSG00000074221.13	novel	6867	9	NA	NA	3	-9	combination_of_known_junctions	FALSE	canonical	3	56	junction_6	59.6777353689417	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACGTACGGTCAAGACT	NA	False	NA	10	True	AATAAA	-13	NA	29683382	29727698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473_29688533_29697174_29697302_29697539_29697636_29713267_29713315_29714490_29714615_29716591_29716688_29721642
ENSMUSG00000074221.13_34	chr7	+	4012	1	ISM	ENSMUSG00000074221.13	ENSMUST00000146074.8	6867	9	38963	9	36489	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	386	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACGTACGGTCAAGACT	NA	False	NA	10	True	AATAAA	-13	NA	29723686	29727698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_29723700_29727700
ENSMUSG00000074227.13_0	chr7	-	960	6	FSM	ENSMUSG00000074227.13	ENSMUST00000108236.5	1211	6	242	9	242	-9	multi-exon	FALSE	canonical	0	0	junction_2	398.697679953119	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAACTTACTATGTA	711	False	NA	-25	True	AATAAA	-12	NA	28981093	28955774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
ENSMUSG00000074227.13_10	chr7	-	1006	7	FSM	ENSMUSG00000074227.13	ENSMUST00000207601.2	1304	7	271	27	269	-9	multi-exon	FALSE	canonical	0	0	junction_2	472.77185007382	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAACTTACTATGTA	738	False	NA	-25	True	AATAAA	-12	NA	28981066	28955774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959481_28959555_28959795_28959856_28980936
ENSMUSG00000074227.13_3	chr7	-	2290	5	NIC	ENSMUSG00000074227.13	novel	1211	6	NA	NA	242	-9	intron_retention	FALSE	canonical	0	0	junction_1	445.694612374886	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAACTTACTATGTA	711	False	NA	-25	True	AATAAA	-12	NA	28981093	28955774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
ENSMUSG00000074227.13_4	chr7	-	1133	7	FSM	ENSMUSG00000074227.13	ENSMUST00000098604.12	1384	7	242	9	240	-9	multi-exon	FALSE	canonical	0	0	junction_2	452.801066204084	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAACTTACTATGTA	709	False	NA	-25	True	AATAAA	-12	NA	28981095	28955774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28963019_28963191_28980936
ENSMUSG00000074238.7_0	chr3	-	2620	10	FSM	ENSMUSG00000074238.7	ENSMUST00000051737.8	2662	10	40	2	40	-2	multi-exon	FALSE	canonical	3	416	junction_8	26.3288791357173	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGATATTTGCATCATGGC	NA	False	NA	-18	True	AATAAA	-14	NA	127631120	127600662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127609244_127609344_127610558_127610656_127614408_127614435_127616232_127616260_127616913_127616963_127630797
ENSMUSG00000074238.7_2	chr3	-	2594	9	NIC	ENSMUSG00000074238.7	novel	2662	10	NA	NA	40	-2	combination_of_known_splicesites	FALSE	canonical	3	48	junction_6	132.051067299738	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGATATTTGCATCATGGC	NA	False	NA	-18	True	AATAAA	-14	NA	127631120	127600662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127609244_127609344_127610558_127610656_127616232_127616260_127616913_127616963_127630797
ENSMUSG00000074240.6_0	chr8	-	1962	2	ISM	ENSMUSG00000074240.6	ENSMUST00000211946.2	2014	4	5400	9	5382	-9	3prime_fragment	FALSE	canonical	3	14	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGCCTCAGGATCTCT	NA	False	NA	NA	False	AATAAA	-9	NA	72961281	72958187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_72958275_72959406
ENSMUSG00000074247.11_0	chr8	+	1890	5	FSM	ENSMUSG00000074247.11	ENSMUST00000124745.8	1933	5	13	30	1	-30	multi-exon	FALSE	canonical	2	515	junction_4	131.476946648452	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATTAAAAACAAAT	NA	False	NA	-17	True	AATAGA	-39	NA	71921855	71928712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71926418_71926481_71927131
ENSMUSG00000074247.11_2	chr8	+	1887	5	FSM	ENSMUSG00000074247.11	ENSMUST00000135052.8	1929	5	12	30	0	-30	multi-exon	FALSE	canonical	2	81	junction_1	303.826739277503	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATTAAAAACAAAT	NA	False	NA	-17	True	AATAGA	-39	NA	71921854	71928712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71921970_71924684_71924762_71924838_71924891_71926418_71926481_71927131
ENSMUSG00000074247.11_22	chr8	+	1191	1	ISM	ENSMUSG00000074247.11	ENSMUST00000124745.8	1933	5	5679	30	4467	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATTAAAAACAAAT	4628	False	NA	-17	True	AATAGA	-39	NA	71927521	71928712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71927500_71928700
ENSMUSG00000074259.11_2	chr9	+	1323	12	NIC	ENSMUSG00000074259.11	novel	1368	11	NA	NA	5	87	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	6.71251452435445	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTAACTTGTTTTATTGT	1641	False	NA	NA	False	NA	NA	NA	59587431	59623794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_59587536_59615282_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619430_59621078_59621224_59621459_59621557_59623205_59623311_59623490
ENSMUSG00000074269.11_0	chr9	-	863	6	FSM	ENSMUSG00000074269.11	ENSMUST00000098674.6	883	6	-7	27	-7	-2	multi-exon	FALSE	canonical	0	0	junction_3	244.73054570282	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACCTTTTATCAATGTT	9043	False	NA	-10	True	AATAAA	-13	NA	58648849	58560165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_58560390_58565039_58565127_58567456_58567655_58573115_58573200_58619298_58619389_58648669
ENSMUSG00000074269.11_4	chr9	-	782	5	NIC	ENSMUSG00000074269.11	novel	883	6	NA	NA	-6	-1	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	258.205828749081	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTTATCAATGTTTTAT	9044	False	NA	-6	True	AATAAA	-17	NA	58648848	58560161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_58560390_58565039_58565127_58567456_58567655_58619298_58619389_58648669
ENSMUSG00000074272.11_1	chr7	-	3147	7	FSM	ENSMUSG00000074272.11	ENSMUST00000098668.3	1478	7	-52	-1617	-3	-5	multi-exon	FALSE	canonical	3	11	junction_6	8	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATAGCACTTTGTGGGG	2865	False	NA	-6	True	AATAAA	-16	NA	25177011	25161136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25163326_25164273_25164306_25164892_25164946_25165741_25165863_25171222_25171499_25175768_25176129_25176895
ENSMUSG00000074272.11_10	chr7	-	3459	8	FSM	ENSMUSG00000074272.11	ENSMUST00000206583.2	1399	8	-77	-1983	-8	-3	multi-exon	FALSE	canonical	1	3	junction_5	10.0974840268985	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGCACTTTGTGGGGTT	2840	False	NA	-4	True	AATAAA	-18	NA	25177036	25161134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25163326_25164273_25164306_25164892_25164946_25165741_25165863_25171222_25171499_25173944_25174230_25175768_25176129_25176895
ENSMUSG00000074272.11_12	chr7	-	4042	5	NIC	ENSMUSG00000074272.11	novel	1722	8	NA	NA	-3	-5	intron_retention	FALSE	canonical	3	9	junction_1	9.97496867163	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATAGCACTTTGTGGGG	2865	False	NA	-6	True	AATAAA	-16	NA	25177011	25161136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_25164306_25165741_25165863_25171222_25171499_25175768_25176129_25176895
ENSMUSG00000074272.11_14	chr7	-	1309	3	ISM	ENSMUSG00000074272.11	ENSMUST00000206687.2	1061	6	-49	7545	0	137	5prime_fragment	FALSE	canonical	3	11	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGTTGTTACTTCCTTT	2868	False	NA	NA	False	NA	NA	NA	25177008	25170662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_25171499_25175768_25176129_25176895
ENSMUSG00000074272.11_15	chr7	-	1686	5	FSM	ENSMUSG00000074272.11	ENSMUST00000206981.2	1711	5	34	-9	-15	8	multi-exon	FALSE	canonical	1	2	junction_2	3.49106001094224	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTTTGTCACTTTCCTG	2902	False	NA	NA	False	NA	NA	NA	25176974	25170791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25171499_25173222_25173478_25173944_25174230_25175768_25176129_25176895
ENSMUSG00000074272.11_19	chr7	-	3636	8	FSM	ENSMUSG00000074272.11	ENSMUST00000098666.9	3656	8	21	-1	1	1	multi-exon	FALSE	canonical	1	2	junction_5	11.2122382116278	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACTTTGTGGGGTTTTCT	2869	False	NA	0	True	AATAAA	-22	NA	25177007	25161130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25163326_25164273_25164306_25165741_25165863_25171222_25171499_25173222_25173478_25173944_25174230_25175768_25176129_25176895
ENSMUSG00000074272.11_2	chr7	-	3110	6	FSM	ENSMUSG00000074272.11	ENSMUST00000206687.2	1061	6	-66	-1983	3	-3	multi-exon	FALSE	canonical	3	9	junction_2	9.62081077664455	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGCACTTTGTGGGGTT	2851	False	NA	-4	True	AATAAA	-18	NA	25177025	25161134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25163326_25164273_25164306_25165741_25165863_25171222_25171499_25175768_25176129_25176895
ENSMUSG00000074272.11_20	chr7	-	3587	8	FSM	ENSMUSG00000074272.11	ENSMUST00000206676.2	1533	8	-67	-1987	2	1	multi-exon	FALSE	canonical	0	0	junction_3	8.97161055320433	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACTTTGTGGGGTTTTCT	2850	False	NA	0	True	AATAAA	-22	NA	25177026	25161130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25163326_25164273_25164306_25164892_25164946_25171222_25171499_25173222_25173478_25173944_25174230_25175768_25176129_25176895
ENSMUSG00000074272.11_22	chr7	-	4543	9	NIC	ENSMUSG00000074272.11	novel	2873	9	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_6	9.49259579883184	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCACTTTGTGGGGTTTT	2862	False	NA	-2	True	AATAAA	-20	NA	25177014	25161132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_25164175_25164273_25164306_25164892_25164946_25165741_25165863_25171222_25171499_25173222_25173478_25173944_25174230_25175768_25176129_25176895
ENSMUSG00000074272.11_29	chr7	-	1594	4	ISM	ENSMUSG00000074272.11	ENSMUST00000206583.2	1399	8	-48	7544	1	138	5prime_fragment	FALSE	canonical	1	3	junction_1	3.39934634239519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTTGTTACTTCCTTTA	2869	False	NA	NA	False	NA	NA	NA	25177007	25170661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_25171499_25173944_25174230_25175768_25176129_25176895
ENSMUSG00000074272.11_3	chr7	-	3381	7	NIC	ENSMUSG00000074272.11	novel	3656	8	NA	NA	-1	-1	combination_of_known_junctions	FALSE	canonical	1	3	junction_4	11.2496913537908	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCACTTTGTGGGGTTTT	2867	False	NA	-2	True	AATAAA	-20	NA	25177009	25161132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_25163326_25164273_25164306_25165741_25165863_25171222_25171499_25173944_25174230_25175768_25176129_25176895
ENSMUSG00000074272.11_4	chr7	-	2228	2	ISM	ENSMUSG00000074272.11	ENSMUST00000098666.9	3656	8	12722	-1	11823	1	3prime_fragment	FALSE	canonical	3	28	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACTTTGTGGGGTTTTCT	NA	False	NA	0	True	AATAAA	-22	NA	25164306	25161130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_25163326_25164273
ENSMUSG00000074272.11_6	chr7	-	3706	9	FSM	ENSMUSG00000074272.11	ENSMUST00000098669.8	2873	9	-28	-805	2	-1	multi-exon	FALSE	canonical	1	2	junction_6	10.3440804327886	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCACTTTGTGGGGTTTT	2850	False	NA	-2	True	AATAAA	-20	NA	25177026	25161132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25163326_25164273_25164306_25164892_25164946_25165741_25165863_25171222_25171499_25173222_25173478_25173944_25174230_25175768_25176129_25176895
ENSMUSG00000074272.11_7	chr7	-	3025	6	FSM	ENSMUSG00000074272.11	ENSMUST00000205308.2	993	6	-47	-1985	2	-1	multi-exon	FALSE	canonical	0	0	junction_3	9.60416576283438	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCACTTTGTGGGGTTTT	2870	False	NA	-2	True	AATAAA	-20	NA	25177006	25161132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_25163326_25164273_25164306_25164892_25164946_25171222_25171499_25175768_25176129_25176895
ENSMUSG00000074272.11_9	chr7	-	3996	7	NIC	ENSMUSG00000074272.11	novel	1478	7	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	9.15453742990631	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCACTTTGTGGGGTTTT	2869	False	NA	-2	True	AATAAA	-20	NA	25177007	25161132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_25164175_25164273_25164306_25164892_25164946_25165741_25165863_25171222_25171499_25175768_25176129_25176895
ENSMUSG00000074274.8_0	chr7	+	655	2	ISM	ENSMUSG00000074274.8	ENSMUST00000186424.2	493	3	427	-404	427	-4	3prime_fragment	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGTTGTGTGTGTTT	1009	False	NA	NA	False	AATAAA	-12	NA	24854920	24856048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_24855046_24855518
ENSMUSG00000074280.7_0	chr9	+	575	1	FSM	ENSMUSG00000074280.7	ENSMUST00000098689.7	409	1	17	-183	17	183	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTGGTTAGTAAATAAAC	NA	False	NA	NA	False	NA	NA	NA	57391262	57391837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57391300_57391800
ENSMUSG00000074282.11_0	chr7	-	2491	6	FSM	ENSMUSG00000074282.11	ENSMUST00000108436.8	2599	6	-20	128	-1	-36	multi-exon	FALSE	canonical	1	2	junction_2	3.8262252939418	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGTTTAAAATACATTT	NA	False	NA	NA	False	AATAAA	-14	NA	24016050	24001256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24003299_24008495_24008623_24010889_24010929_24011806_24011921_24013774_24013837_24015943
ENSMUSG00000074282.11_1	chr7	-	2482	5	FSM	ENSMUSG00000074282.11	ENSMUST00000032673.15	2529	5	11	36	11	-36	multi-exon	FALSE	canonical	2	9	junction_1	0.866025403784439	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGTTTAAAATACATTT	NA	False	NA	NA	False	AATAAA	-14	NA	24016080	24001256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_24003299_24008495_24008623_24011806_24011921_24013774_24013837_24015943
ENSMUSG00000074283.6_0	chr7	-	5000	4	NNC	ENSMUSG00000074283.6	novel	2932	4	NA	NA	-125	2229	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_1	2.49443825784929	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGCGTTGTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	23937110	23924767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_23929266_23933775_23933903_23936042_23936101_23936793
ENSMUSG00000074283.6_2	chr7	-	5287	4	FSM	ENSMUSG00000074283.6	ENSMUST00000206362.2	2932	4	-126	-2229	-126	2229	multi-exon	FALSE	canonical	1	1	junction_3	7.93025150224688	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGCGTTGTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	23937111	23924767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_23929266_23933775_23933903_23936042_23936101_23936507
ENSMUSG00000074283.6_3	chr7	-	3284	1	Genic_Genomic	ENSMUSG00000074283.6	novel	NA	NA	NA	NA	8004	2227	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATAAGCGTTGTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	23928053	23924769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_23924800_23928100
ENSMUSG00000074283.6_6	chr7	-	4574	2	ISM	ENSMUSG00000074283.6	ENSMUST00000037448.7	1935	3	2206	-2705	2206	2229	3prime_fragment	FALSE	canonical	3	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGCGTTGTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	23933851	23924767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_23929266_23933775
ENSMUSG00000074284.7_0	chr9	-	2828	3	FSM	ENSMUSG00000074284.7	ENSMUST00000128125.2	1241	3	-148	-1439	11	1439	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGTTGGAATCCCTT	NA	False	NA	NA	False	NA	NA	NA	56979239	56962474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_56964423_56964552_56965086_56978892
ENSMUSG00000074305.10_0	chr9	-	8015	4	ISM	ENSMUSG00000074305.10	ENSMUST00000061552.15	6996	7	159928	-3991	-14074	-12	3prime_fragment	FALSE	canonical	3	41	junction_2	3.55902608401044	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACACTAAAAACCAGACTT	NA	False	NA	NA	False	AATAAA	-12	NA	56165423	56108421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_56114896_56134385_56135129_56148443_56148629_56164810
ENSMUSG00000074305.10_1	chr9	-	6697	2	ISM	ENSMUSG00000074305.10	ENSMUST00000188142.7	7524	4	16748	5	16748	-5	3prime_fragment	FALSE	canonical	3	49	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCAGACTTGAAGTGC	4783	False	NA	NA	False	AATAAA	-19	NA	56134601	56108414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_56114896_56134385
ENSMUSG00000074305.10_2	chr9	-	3059	1	ISM	ENSMUSG00000074305.10	ENSMUST00000188142.7	7524	4	39874	7	39874	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAAACCAGACTTGAAGT	NA	False	NA	NA	False	AATAAA	-17	NA	56111475	56108416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_56108400_56111500
ENSMUSG00000074305.10_4	chr9	-	10954	6	NIC	ENSMUSG00000074305.10	novel	6996	7	NA	NA	-29	-10	combination_of_known_splicesites	FALSE	canonical	1	3	junction_5	16.1542564050469	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACTAAAAACCAGACTTGA	NA	False	NA	NA	False	AATAAA	-14	NA	56325380	56108419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_56114896_56134385_56135129_56148443_56148629_56164810_56168047_56225946_56226105_56325224
ENSMUSG00000074305.10_5	chr9	-	7002	7	FSM	ENSMUSG00000074305.10	ENSMUST00000061552.15	6996	7	-6	0	-6	0	multi-exon	FALSE	canonical	3	31	junction_4	5.42883249163411	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGTGAGAACTGCAGAA	NA	False	NA	-8	True	NA	NA	NA	56325357	56112412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_56114896_56134385_56135129_56148443_56148629_56164810_56168047_56225946_56226105_56281659_56281724_56325224
ENSMUSG00000074305.10_6	chr9	-	2271	1	ISM	ENSMUSG00000074305.10	ENSMUST00000188142.7	7524	4	36666	4003	36666	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGTGAGAACTGCAGAA	NA	False	NA	-8	True	NA	NA	NA	56114683	56112412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_56112400_56114700
ENSMUSG00000074305.10_8	chr9	-	1396	1	FSM	ENSMUSG00000074305.10	ENSMUST00000185775.2	1352	1	-51	7	-34	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAGGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56325385	56323989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_56324000_56325400
ENSMUSG00000074336.6_1	chr7	-	515	3	FSM	ENSMUSG00000074336.6	ENSMUST00000003071.10	538	3	11	12	11	-12	multi-exon	FALSE	canonical	3	21	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTGTCACCGGACGCAT	5945	False	NA	-9	True	AATAAA	-15	NA	19415393	19412019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19412238_19412534_19412668_19415229
ENSMUSG00000074345.5_0	chr9	-	4517	1	Genic_Genomic	ENSMUSG00000074345.5	novel	NA	NA	NA	NA	41150	699	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGTGTTCTGAATTATT	1596	False	NA	NA	False	AATAAA	-20	NA	53934506	53929989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_-_53930000_53934500
ENSMUSG00000074357.4_0	chr8	+	1649	1	FSM	ENSMUSG00000074357.4	ENSMUST00000098781.3	1665	1	3	13	3	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTTACCAAGAGCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48128428	48130077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_48128400_48130100
ENSMUSG00000074358.10_0	chr7	-	1957	14	NIC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	25	-1	combination_of_known_junctions	TRUE	canonical	3	82	junction_7	38.5657050949086	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCCCTAGTGTGTGATTC	2811	False	NA	-3	True	AATAAA	-16	NA	18644289	18624809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ENSMUSG00000074358.10_3	chr7	-	1970	14	FSM	ENSMUSG00000074358.10	ENSMUST00000098780.10	2022	14	50	2	24	-1	multi-exon	FALSE	canonical	3	126	junction_7	27.4902887640592	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCCCTAGTGTGTGATTC	2810	False	NA	-3	True	AATAAA	-16	NA	18644290	18624809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627691_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ENSMUSG00000074365.14_0	chr7	+	903	5	FSM	ENSMUSG00000074365.14	ENSMUST00000098801.9	934	5	26	5	-21	-5	multi-exon	FALSE	canonical	3	145	junction_3	373.339992500134	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATGACTGCTTTAAAAG	NA	False	NA	14	True	AATAAA	-19	NA	15630074	15637940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_15630183_15631328_15631478_15632369_15632542_15636774_15636933_15637624
ENSMUSG00000074365.14_1	chr7	+	2109	3	FSM	ENSMUSG00000074365.14	ENSMUST00000150050.3	2090	3	-24	5	23	0	multi-exon	FALSE	canonical	3	257	junction_2	3	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATATGATCTGTGCCTG	NA	False	NA	NA	False	AATAAA	-14	NA	15630071	15634218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_15630183_15631328_15631478_15632369
ENSMUSG00000074365.14_10	chr7	+	581	3	FSM	ENSMUSG00000074365.14	ENSMUST00000171280.3	571	3	-15	5	-15	-5	multi-exon	FALSE	canonical	3	864	junction_1	106.5	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATGACTGCTTTAAAAG	NA	False	NA	14	True	AATAAA	-19	NA	15635555	15637940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_15635663_15636774_15636933_15637624
ENSMUSG00000074397.6_2	chr9	-	172	1	ISM	ENSMUSG00000074397.6	ENSMUST00000098837.3	1968	5	6746	19	6427	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	44345687	44345515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44345500_44345700
ENSMUSG00000074397.6_3	chr9	-	752	3	ISM	ENSMUSG00000074397.6	ENSMUST00000215980.2	676	4	-97	227	24	-227	5prime_fragment	FALSE	canonical	3	31	junction_1	2.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTGACCTGGACCCTGG	9238	False	NA	-7	True	AATAAA	-15	NA	44352409	44347078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_44347400_44347500_44347576_44352053
ENSMUSG00000074397.6_5	chr9	-	1799	5	FSM	ENSMUSG00000074397.6	ENSMUST00000098837.3	1968	5	154	15	33	-15	multi-exon	FALSE	canonical	0	0	junction_2	16.1322658049017	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAAACCGA	9368	False	NA	NA	False	NA	NA	NA	44352279	44345511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44346607_44346719_44346879_44347155_44347400_44347500_44347576_44352053
ENSMUSG00000074398.6_0	chr3	-	799	2	ISM	ENSMUSG00000074398.6	ENSMUST00000098839.3	659	3	18	9	18	-9	intron_retention	FALSE	canonical	2	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTAAAAAAGTTCTTGT	NA	False	NA	NA	False	AATAAA	-7	NA	96465113	96463089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_96463377_96464601
ENSMUSG00000074403.3_0	chr3	+	474	1	FSM	ENSMUSG00000074403.3	ENSMUST00000098843.3	488	1	27	-13	27	13	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTTGTCGATGAAAGTAGC	2007	False	NA	NA	False	NA	NA	NA	96175996	96176470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96176000_96176500
ENSMUSG00000074405.9_0	chr7	+	3772	2	ISM	ENSMUSG00000074405.9	ENSMUST00000085427.6	2751	3	0	462	0	-110	5prime_fragment	FALSE	canonical	2	2	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCGCTGGGGTCTGTCCTT	2948	False	NA	3	True	AATAAA	-13	NA	5023568	5035675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_5023655_5031989
ENSMUSG00000074405.9_1	chr7	+	905	2	ISM	ENSMUSG00000074405.9	ENSMUST00000085427.6	2751	3	10266	-85	1512	85	3prime_fragment	FALSE	canonical	3	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCTGGCTAATCTTGAAC	NA	False	NA	1	True	NA	NA	NA	5033834	5036222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_5034279_5035761
ENSMUSG00000074405.9_2	chr7	+	1388	1	FSM	ENSMUSG00000074405.9	ENSMUST00000207193.2	3815	1	1966	461	1966	-109	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGCTGGGGTCTGTCCTTG	NA	False	NA	4	True	AATAAA	-14	NA	5034288	5035676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_5034300_5035700
ENSMUSG00000074406.6_1	chr7	+	3531	3	FSM	ENSMUSG00000074406.6	ENSMUST00000116354.4	3523	3	-8	0	-8	0	multi-exon	FALSE	canonical	3	14	junction_2	2	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGTTTTGTTTTCATG	2963	False	NA	8	True	AATAAA	-14	NA	4918207	4925001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_4918405_4920408_4920516_4921774
ENSMUSG00000074406.6_3	chr7	+	3414	2	NIC	ENSMUSG00000074406.6	novel	3523	3	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGTTTTGTTTTCATG	2973	False	NA	8	True	AATAAA	-14	NA	4918217	4925001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_4918405_4921774
ENSMUSG00000074406.6_5	chr7	+	1853	1	ISM	ENSMUSG00000074406.6	ENSMUST00000116354.4	3523	3	4933	0	4933	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGTTTTGTTTTCATG	278	False	NA	8	True	AATAAA	-14	NA	4923148	4925001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_4923100_4925000
ENSMUSG00000074415.15_0	chr9	+	7886	1	FSM	ENSMUSG00000074415.15	ENSMUST00000181296.2	4244	1	-3649	7	-2924	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAGTAGCCCAAGCACAA	NA	False	NA	NA	False	AATAAA	-14	NA	41496140	41504026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_41496100_41504000
ENSMUSG00000074452.14_11	chr9	+	1606	8	ISM	ENSMUSG00000074452.14	ENSMUST00000098906.9	1690	11	-19	18903	-19	0	5prime_fragment	FALSE	canonical	0	0	junction_4	5.15078753637713	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGTCTTCTGAGTTAAG	NA	False	NA	NA	False	AATATA	-15	NA	35481560	35582711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_35481827_35485525_35485684_35518890_35519016_35523067_35523168_35580718_35581031_35581174_35581199_35581774_35581907_35582222
ENSMUSG00000074452.14_2	chr9	+	751	4	ISM	ENSMUSG00000074452.14	ENSMUST00000098906.9	1690	11	-18	78344	-18	-34483	5prime_fragment	FALSE	canonical	2	5	junction_2	4.54606056566195	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCAAATGTATGATAATG	NA	False	NA	NA	False	AATAAA	-7	NA	35481561	35523270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_35481827_35485525_35485684_35518890_35519016_35523067
ENSMUSG00000074452.14_3	chr9	+	309	1	NIC	ENSMUSG00000074452.14	novel	1690	11	NA	NA	23	-75842	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTGACGTTTACAATGA	NA	False	NA	NA	False	AATAAA	-13	NA	35481602	35481911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_35481600_35481900
ENSMUSG00000074452.14_9	chr9	+	900	5	NIC	ENSMUSG00000074452.14	novel	1690	11	NA	NA	43	2	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	4.49305018890286	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGCCTCATATATTCTG	NA	False	NA	NA	False	AATAAA	-20	NA	35481622	35557755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_35481827_35485525_35485684_35518890_35519016_35523067_35523168_35557442
ENSMUSG00000074457.11_1	chr3	+	1059	3	FSM	ENSMUSG00000074457.11	ENSMUST00000098911.10	1127	3	62	6	1	-6	multi-exon	FALSE	canonical	3	11	junction_1	6	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTAACTCTTGGCTGC	NA	False	NA	2	True	AATAAA	-13	NA	90444622	90450449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90444725_90449300_90449480_90449671
ENSMUSG00000074461.3_0	chr8	+	2093	1	FSM	ENSMUSG00000074461.3	ENSMUST00000098916.3	2130	1	26	11	26	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTTTCAATAAGACT	4333	False	NA	NA	False	NA	NA	NA	14140486	14142579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_14140500_14142600
ENSMUSG00000074461.3_1	chr8	+	1950	2	Genic_Genomic	ENSMUSG00000074461.3	novel	2130	1	NA	NA	26	-11	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTTTCAATAAGACT	4333	False	NA	NA	False	NA	NA	NA	14140486	14142579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_14140659_14140801
ENSMUSG00000074466.13_0	chr3	+	261	2	FSM	ENSMUSG00000074466.13	ENSMUST00000145400.8	923	2	587	75	467	3	multi-exon	FALSE	canonical	3	16	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCGCTTCCCTTCTTGGGC	5844	False	NA	NA	False	ACTAAA	-28	NA	89299743	89305456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89299814_89305265
ENSMUSG00000074476.7_25	chr9	-	1127	6	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	-3	-25	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	894.372495104808	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATACATTAAATAAATACTC	NA	False	NA	NA	False	NA	NA	NA	21671581	21666762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_21666902_21667097_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
ENSMUSG00000074476.7_7	chr9	-	1337	5	FSM	ENSMUSG00000074476.7	ENSMUST00000098942.6	1366	5	16	13	-5	-13	multi-exon	FALSE	canonical	3	1938	junction_4	159.647071692531	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACTCTTTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21671583	21666750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
ENSMUSG00000074476.7_8	chr9	-	1236	5	NIC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	158	junction_4	926.927552454883	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTGTGTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	21671602	21666737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671547
ENSMUSG00000074479.4_0	chr3	-	729	1	FSM	ENSMUSG00000074479.4	ENSMUST00000098952.4	730	1	166	-165	166	165	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGCTAAAAAAAAAAAA	8993	False	NA	NA	False	AATAAA	-12	NA	88484280	88483551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88483600_88484300
ENSMUSG00000074480.5_0	chr3	+	4153	2	FSM	ENSMUSG00000074480.5	ENSMUST00000172699.2	5778	2	-367	1992	-367	-1992	multi-exon	FALSE	canonical	3	19	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCGGGTTTATGTTCTT	NA	False	NA	NA	False	AATACA	-41	NA	88439334	88446711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_88440156_88443379
ENSMUSG00000074480.5_2	chr3	+	2803	1	ISM	ENSMUSG00000074480.5	ENSMUST00000172699.2	5778	2	6193	6	6193	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGGCTCTTGTCTTTCAC	4774	False	NA	11	True	ATTAAA	-41	NA	88445894	88448697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88445900_88448700
ENSMUSG00000074489.10_0	chr3	-	699	5	NIC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_3	35.14612354158	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7128	False	NA	NA	False	AATAAA	-13	NA	88280050	88275928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88279845
ENSMUSG00000074489.10_1	chr3	-	3596	5	NNC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_4	18.3166590840142	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7128	False	NA	NA	False	AATAAA	-13	NA	88280050	88275928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88277896_88277928
ENSMUSG00000074489.10_12	chr3	-	3809	3	FSM	ENSMUSG00000074489.10	ENSMUST00000140259.2	816	3	-2993	0	28	0	multi-exon	FALSE	canonical	3	35	junction_2	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGGCTGGAGTCTGTC	7156	False	NA	NA	False	AATAAA	-15	NA	88280022	88275926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88276460_88276602_88276636_88276779
ENSMUSG00000074489.10_2	chr3	-	2020	4	FSM	ENSMUSG00000074489.10	ENSMUST00000075523.11	717	4	-1302	-1	-1302	1	multi-exon	FALSE	canonical	3	35	junction_3	4.49691252107735	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGGCTGGAGTCTGT	8738	False	NA	NA	False	AATAAA	-14	NA	88278440	88275927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779
ENSMUSG00000074489.10_3	chr3	-	682	5	NNC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	6.26498204307083	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7132	False	NA	NA	False	AATAAA	-13	NA	88280046	88275928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88279858
ENSMUSG00000074489.10_4	chr3	-	3110	5	ISM	ENSMUSG00000074489.10	ENSMUST00000107542.2	2051	6	0	0	0	0	intron_retention	FALSE	canonical	3	22	junction_4	9.23309265630969	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7128	False	NA	NA	False	AATAAA	-13	NA	88280050	88275928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88277434
ENSMUSG00000074489.10_5	chr3	-	2566	5	NIC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	4	0	intron_retention	TRUE	canonical	3	20	junction_4	10.0249688278817	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7132	False	NA	NA	False	AATAAA	-13	NA	88280046	88275928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88278787_88279845
ENSMUSG00000074489.10_7	chr3	-	2049	6	FSM	ENSMUSG00000074489.10	ENSMUST00000107542.2	2051	6	1	1	1	-1	multi-exon	FALSE	canonical	3	20	junction_5	10.571660229122	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTGGGCTGGAGTCT	7129	False	NA	NA	False	AATAAA	-12	NA	88280049	88275929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88277434_88278787_88279845
ENSMUSG00000074489.10_9	chr3	-	3096	1	NIC	ENSMUSG00000074489.10	novel	1047	7	NA	NA	3	-1023	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACATAGTGTCGTCGTT	7131	False	NA	NA	False	NA	NA	NA	88280047	88276951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_88277000_88280000
ENSMUSG00000074500.12_1	chr9	-	4473	7	NIC	ENSMUSG00000074500.12	novel	1701	8	NA	NA	-73	1996	intron_retention	FALSE	canonical	1	1	junction_1	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATAAATGGTCAAACATT	1096	False	NA	NA	False	AATAAA	-17	NA	18384928	18364874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_18368349_18368796_18368892_18370952_18371049_18379215_18379343_18379909_18379999_18384181_18384291_18384445
ENSMUSG00000074500.12_11	chr9	-	4399	8	FSM	ENSMUSG00000074500.12	ENSMUST00000034647.11	1701	8	-83	-2615	-83	1998	multi-exon	FALSE	canonical	1	1	junction_1	1.39970842444753	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATGGTCAAACATTAT	1086	False	NA	NA	False	AATAAA	-19	NA	18384938	18364872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_18368349_18368796_18368892_18370952_18371049_18379215_18379343_18379909_18379999_18380574_18380693_18384181_18384291_18384649
ENSMUSG00000074506.5_0	chr3	-	648	1	FSM	ENSMUSG00000074506.5	ENSMUST00000098980.5	461	1	19	-206	19	206	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAATAAAATAAAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	87115293	87114645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_87114600_87115300
ENSMUSG00000074513.10_0	chr3	-	1167	1	ISM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	85271	4	85222	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATCCAGTTGCCCTGTCC	NA	False	NA	-7	True	ATTAAA	-12	NA	84404570	84403403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_84403400_84404600
ENSMUSG00000074513.10_1	chr3	-	2919	8	FSM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	-124	4	-33	-4	multi-exon	FALSE	canonical	3	164	junction_6	7.88954358370519	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATCCAGTTGCCCTGTCC	NA	False	NA	-7	True	ATTAAA	-12	NA	84489965	84403403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
ENSMUSG00000074513.10_2	chr3	-	3024	9	FSM	ENSMUSG00000074513.10	ENSMUST00000143514.3	1343	9	-40	-1641	-40	-2	multi-exon	FALSE	canonical	3	20	junction_5	63.3733974156349	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCAGTTGCCCTGTCCTT	NA	False	NA	-5	True	ATTAAA	-14	NA	84489972	84403401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84436476_84436573_84441893_84442003_84455240_84455343_84489720
ENSMUSG00000074513.10_3	chr3	-	2817	7	NIC	ENSMUSG00000074513.10	novel	2799	8	NA	NA	-33	-4	combination_of_known_splicesites	FALSE	canonical	3	10	junction_6	62.7986199423735	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATCCAGTTGCCCTGTCC	NA	False	NA	-7	True	ATTAAA	-12	NA	84489965	84403403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84489720
ENSMUSG00000074516.7_0	chr9	+	652	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	-51	-121	-51	121	mono-exon	FALSE	NA	NA	NA	NA	NA	746	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	-1	True	NA	NA	False	AATAAA	-18	NA	7751674	7752326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_7751700_7752300
ENSMUSG00000074519.12_4	chr2	+	6270	4	FSM	ENSMUSG00000074519.12	ENSMUST00000108926.3	1413	4	-108	-4749	-13	4749	multi-exon	FALSE	canonical	2	14	junction_3	11.2644968324772	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	177665063	177680564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_177665175_177673047_177673175_177673382_177673444_177674593
ENSMUSG00000074519.12_5	chr2	+	5989	5	NNC	ENSMUSG00000074519.12	novel	923	3	NA	NA	-12	4749	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7.17635004720366	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	177665064	177680564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_177665147_177673047_177673175_177673382_177673444_177674593_177674927_177675178
ENSMUSG00000074521.10_1	chr2	+	4497	6	NNC	ENSMUSG00000074521.10	novel	1451	3	NA	NA	56	133679	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	21.5777663348179	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGTTTCTTGGTGATGA	NA	False	NA	NA	False	NA	NA	NA	177538944	177681256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_177539047_177546077_177546205_177546411_177546473_177547625_177547883_177548050_177551646_177680901
ENSMUSG00000074521.10_14	chr2	+	3886	5	NNC	ENSMUSG00000074521.10	novel	1451	3	NA	NA	136	130854	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	21.6607363679077	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	177539024	177678431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_177539047_177546077_177546205_177546411_177546473_177547625_177551274_177678403
ENSMUSG00000074521.10_2	chr2	+	433	3	FSM	ENSMUSG00000074521.10	ENSMUST00000108935.8	1451	3	58	960	58	141	multi-exon	FALSE	canonical	3	28	junction_2	14.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCAGATATGTAATTATT	NA	False	NA	NA	False	NA	NA	NA	177538946	177546617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_177539047_177546077_177546205_177546411
ENSMUSG00000074521.10_3	chr2	+	3956	4	NNC	ENSMUSG00000074521.10	novel	1451	3	NA	NA	69	3727	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	19.3620476419435	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	177538957	177551304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_177539047_177546077_177546205_177546411_177546473_177547625
ENSMUSG00000074521.10_4	chr2	+	6171	5	Fusion	ENSMUSG00000074521.10_ENSMUSG00000074519.12	novel	1451	3	NA	NA	62	4749	multi-exon	FALSE	non_canonical	0	0	junction_4	21.6029511872799	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	177538950	177680564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_177539047_177546077_177546205_177673382_177673444_177674593_177674915_177674998
ENSMUSG00000074527.12_0	chr2	-	5833	1	NIC	ENSMUSG00000074527.12	novel	5159	6	NA	NA	19157	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAAGAGGTGCACCATT	NA	False	NA	NA	False	AATAAA	-42	NA	176590154	176584321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_176584300_176590200
ENSMUSG00000074527.12_2	chr2	-	3005	1	FSM	ENSMUSG00000074527.12	ENSMUST00000108931.3	750	1	463	-2718	463	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAGGTGGGATAGA	NA	False	NA	NA	False	AATAAA	-24	NA	176608848	176605843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_176605800_176608800
ENSMUSG00000074527.12_3	chr2	-	3794	5	FSM	ENSMUSG00000074527.12	ENSMUST00000099007.3	3823	5	29	0	14	0	multi-exon	FALSE	canonical	3	18	junction_3	30.886890422961	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	NA	False	NA	NA	False	AATAAA	-25	NA	176619573	176605842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_176609305_176610459_176610521_176610725_176610853_176615991_176616047_176619484
ENSMUSG00000074527.12_4	chr2	-	3562	3	ISM	ENSMUSG00000074527.12	ENSMUST00000099007.3	3823	5	8838	0	88	0	3prime_fragment	FALSE	canonical	3	38	junction_2	29	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	NA	False	NA	NA	False	AATAAA	-25	NA	176610764	176605842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_176609305_176610459_176610521_176610725
ENSMUSG00000074527.12_5	chr2	-	3789	5	NNC	ENSMUSG00000074527.12	novel	3823	5	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	34.8093019177346	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAGGTGGGATAGA	NA	False	NA	NA	False	AATAAA	-24	NA	176619597	176605843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176609305_176610459_176610521_176610725_176610853_176615991_176616047_176619512
ENSMUSG00000074527.12_8	chr2	-	3135	6	FSM	ENSMUSG00000074527.12	ENSMUST00000125090.8	2314	6	28	-849	17	-758	multi-exon	FALSE	canonical	2	5	junction_4	32.7878026101171	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTGGACAGTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	176619570	176606600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_176609305_176610459_176610521_176610725_176610853_176614588_176614691_176615991_176616047_176619484
ENSMUSG00000074529.11_0	chr2	-	810	3	NIC	ENSMUSG00000074529.11	novel	561	3	NA	NA	-48	258	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAGTAACTCAAAGTC	NA	False	NA	NA	False	AATAAA	-24	NA	177567454	177544874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177545521_177563227_177563289_177567351
ENSMUSG00000074529.11_1	chr2	-	751	2	NIC	ENSMUSG00000074529.11	novel	561	3	NA	NA	-50	258	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAGTAACTCAAAGTC	NA	False	NA	NA	False	AATAAA	-24	NA	177567456	177544874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177545521_177567351
ENSMUSG00000074529.11_3	chr2	-	921	4	NIC	ENSMUSG00000074529.11	novel	561	3	NA	NA	-35	255	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	2.49443825784929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCAATAAAAGTAACTCAAA	NA	False	NA	NA	False	AATAAA	-21	NA	177567441	177544877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177545521_177563227_177563289_177563481_177563609_177567351
ENSMUSG00000074529.11_4	chr2	-	858	3	FSM	ENSMUSG00000074529.11	ENSMUST00000108934.9	561	3	-44	-253	-35	253	multi-exon	FALSE	canonical	3	10	junction_1	2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTCCAATAAAAGTAACTCA	NA	False	NA	NA	False	AATAAA	-19	NA	177567441	177544879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_177545521_177563481_177563609_177567351
ENSMUSG00000074575.5_0	chr2	-	4066	3	FSM	ENSMUSG00000074575.5	ENSMUST00000109191.2	4089	3	28	-5	28	5	multi-exon	FALSE	canonical	1	2	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCTCTGGTGTTTTGTCA	NA	False	NA	NA	False	NA	NA	NA	168123024	168102031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168105071_168110388_168111189_168122797
ENSMUSG00000074576.5_0	chr2	+	1687	1	FSM	ENSMUSG00000074576.5	ENSMUST00000099071.5	1973	1	1	285	1	-285	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAACTGAATTAATCACTTA	NA	False	NA	20	True	ATTAAA	-31	NA	168072542	168074229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_168072500_168074200
ENSMUSG00000074578.15_0	chr2	+	445	5	FSM	ENSMUSG00000074578.15	ENSMUST00000189909.7	738	5	288	5	1	-5	multi-exon	FALSE	canonical	3	874	junction_1	47.5105251496971	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATCTGCTGTGTCTTGA	NA	False	NA	30	True	AATAAA	-40	NA	166905141	166907777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353_166907401_166907606
ENSMUSG00000074578.15_13	chr2	+	169	1	ISM	ENSMUSG00000074578.15	ENSMUST00000189909.7	738	5	2755	5	2456	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATCTGCTGTGTCTTGA	1141	False	NA	30	True	AATAAA	-40	NA	166907608	166907777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_166907600_166907800
ENSMUSG00000074578.15_14	chr2	+	254	3	ISM	ENSMUSG00000074578.15	ENSMUST00000189909.7	738	5	2248	5	1949	-5	3prime_fragment	FALSE	canonical	3	933	junction_1	1	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATCTGCTGTGTCTTGA	634	False	NA	30	True	AATAAA	-40	NA	166907101	166907777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_166907138_166907353_166907401_166907606
ENSMUSG00000074578.15_3	chr2	+	662	4	FSM	ENSMUSG00000074578.15	ENSMUST00000125841.3	525	4	-2	-135	0	-5	multi-exon	FALSE	canonical	3	874	junction_1	54.7783412186483	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATCTGCTGTGTCTTGA	NA	False	NA	30	True	AATAAA	-40	NA	166905140	166907777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_166905218_166905555_166905648_166907078_166907401_166907606
ENSMUSG00000074579.15_1	chr3	+	2451	3	FSM	ENSMUSG00000074579.15	ENSMUST00000099075.4	2461	3	4	6	-3	-6	multi-exon	FALSE	canonical	3	10	junction_2	1	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTACACATTTGTGTGTAA	NA	False	NA	NA	False	AATAAA	-8	NA	65573652	65593594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_65573733_65576510_65576600_65591312
ENSMUSG00000074580.12_0	chr3	-	352	1	FSM	ENSMUSG00000074580.12	ENSMUST00000193051.2	1725	1	1333	40	304	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCCGAATTTAAGAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	65435301	65434949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_65434900_65435300
ENSMUSG00000074582.11_2	chr2	+	5936	39	FSM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	-45	2879	-45	-2879	multi-exon	TRUE	canonical	3	156	junction_4	19.7687636593819	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACCTAAGTGCGCGGTG	NA	False	NA	8	True	AATAAA	-20	NA	166647462	166737093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_166647756_166668846_166668878_166669461_166669586_166676390_166676538_166677532_166677713_166678121_166678378_166684604_166684674_166687369_166687522_166690786_166690918_166692962_166693198_166693874_166693975_166695174_166695315_166696824_166696934_166698326_166698511_166701182_166701295_166701705_166701912_166702233_166702319_166702444_166702617_166703503_166703656_166705476_166705606_166706612_166706772_166707599_166707748_166708831_166708932_166709065_166709107_166709207_166709378_166710811_166710964_166712129_166712303_166713378_166713540_166715495_166715627_166715782_166715913_166718412_166718549_166720190_166720330_166720437_166720493_166723091_166723207_166727698_166727830_166732188_166732358_166733686_166733826_166735420_166735539_166736531
ENSMUSG00000074582.11_77	chr2	+	3849	3	ISM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	86018	10	63949	-10	3prime_fragment	FALSE	canonical	3	208	junction_2	13.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTAAAGCTGCTCCCA	NA	False	NA	NA	False	AATAAA	-6	NA	166733525	166739962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_166733826_166735420_166735539_166736531
ENSMUSG00000074582.11_78	chr2	+	2504	1	ISM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	89951	10	67882	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTAAAGCTGCTCCCA	NA	False	NA	NA	False	AATAAA	-6	NA	166737458	166739962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_166737500_166740000
ENSMUSG00000074634.13_0	chr13	+	1651	2	FSM	ENSMUSG00000074634.13	ENSMUST00000178948.2	1648	2	-3	0	-3	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTGTTTCTTTTGTT	NA	False	NA	NA	False	AATAAA	-32	NA	120068182	120071994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_120068567_120070727
ENSMUSG00000074637.8_0	chr3	+	2458	1	FSM	ENSMUSG00000074637.8	ENSMUST00000099151.6	2057	1	-408	7	-408	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAATTATGCCTGAGTC	4199	False	NA	12	True	AATAAA	-17	NA	34704145	34706603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_34704100_34706600
ENSMUSG00000074643.13_1	chr2	-	3435	16	FSM	ENSMUSG00000074643.13	ENSMUST00000109607.10	3441	16	5	1	1	-1	multi-exon	FALSE	canonical	3	257	junction_15	28.8510350286124	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCAGTGGCCGCTCTTGTT	NA	False	NA	-4	True	AATAAA	-17	NA	155953854	155913765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155953705
ENSMUSG00000074643.13_3	chr2	-	3517	17	NIC	ENSMUSG00000074643.13	novel	3492	17	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_15	70.9506595723394	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	-3	True	AATAAA	-18	NA	155953854	155913764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945350_155953705
ENSMUSG00000074643.13_42	chr2	-	3718	3	FSM	ENSMUSG00000089824.11	ENSMUST00000059647.12	6667	3	22	2927	-18	2600	multi-exon	FALSE	canonical	3	245	junction_2	24	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCATTGTATGTACCTT	NA	False	NA	-15	True	AATAAA	-13	NA	155953854	155936804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155940293_155945268_155945350_155953705
ENSMUSG00000074643.13_44	chr2	-	3683	3	FSM	ENSMUSG00000089824.11	ENSMUST00000109604.9	6635	3	25	2927	-15	2600	multi-exon	FALSE	canonical	3	132	junction_2	80.5	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCATTGTATGTACCTT	NA	False	NA	-15	True	AATAAA	-13	NA	155953851	155936804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155940293_155945268_155945318_155953705
ENSMUSG00000074643.13_6	chr2	-	3485	17	FSM	ENSMUSG00000074643.13	ENSMUST00000109608.9	3492	17	9	-2	1	0	multi-exon	FALSE	canonical	3	55	junction_15	81.3740399328926	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	-3	True	AATAAA	-18	NA	155953854	155913764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945318_155953705
ENSMUSG00000074652.4_26	chr2	+	5265	32	ISM	ENSMUSG00000074652.4	ENSMUST00000092995.6	6163	42	7387	107	7387	-3	3prime_fragment	FALSE	canonical	3	22	junction_7	15.8722134313131	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTAGCCACTGTCCTTA	NA	False	NA	8	True	AATAAA	-13	NA	155460518	155476120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155460753_155462009_155462114_155462306_155462446_155462700_155462820_155462911_155463062_155463185_155463357_155464087_155464268_155464353_155464487_155464564_155464642_155465122_155465211_155465363_155465482_155467559_155467684_155467770_155467908_155468256_155468513_155469491_155469735_155470412_155470590_155470673_155470820_155471038_155471130_155471210_155471601_155472177_155472305_155472394_155472514_155472600_155472798_155472930_155473281_155473398_155473524_155473633_155473750_155474067_155474465_155474546_155474673_155474767_155474939_155475084_155475190_155475272_155475369_155475782_155475921_155475999
ENSMUSG00000074652.4_35	chr2	+	3379	19	ISM	ENSMUSG00000074652.4	ENSMUST00000092995.6	6163	42	15237	107	-2611	-3	3prime_fragment	FALSE	canonical	3	38	junction_2	13.4215829501922	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTAGCCACTGTCCTTA	NA	False	NA	8	True	AATAAA	-13	NA	155468368	155476120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155468513_155469491_155469735_155470412_155470590_155470673_155470820_155471038_155471130_155471210_155471601_155472177_155472305_155472394_155472514_155472600_155472798_155472930_155473281_155473398_155473524_155473633_155473750_155474067_155474465_155474546_155474673_155474767_155474939_155475084_155475190_155475272_155475369_155475782_155475921_155475999
ENSMUSG00000074652.4_40	chr2	+	2502	14	ISM	ENSMUSG00000074652.4	ENSMUST00000092995.6	6163	42	18158	104	310	0	3prime_fragment	FALSE	canonical	3	44	junction_5	10.8850910469592	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGCCACTGTCCTTATTT	NA	False	NA	11	True	AATAAA	-16	NA	155471289	155476123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_155471601_155472177_155472305_155472394_155472514_155472600_155472798_155472930_155473281_155473398_155473524_155473633_155473750_155474067_155474465_155474546_155474673_155474767_155474939_155475084_155475190_155475272_155475369_155475782_155475921_155475999
ENSMUSG00000074652.4_5	chr2	+	5555	38	NNC	ENSMUSG00000074652.4	novel	667	3	NA	NA	2468	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	16.9925003867506	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGCCACTGTCCTTATTT	NA	False	NA	11	True	AATAAA	-16	NA	155455599	155476123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_155455656_155455958_155456116_155456387_155456416_155459443_155459468_155459567_155459661_155459781_155459846_155460653_155460753_155462009_155462114_155462306_155462446_155462700_155462820_155462911_155463062_155463185_155463357_155464087_155464268_155464353_155464487_155464564_155464642_155465122_155465211_155465363_155465482_155467559_155467684_155467770_155467908_155468256_155468513_155469491_155469735_155470412_155470590_155470673_155470820_155471038_155471130_155471210_155471601_155472177_155472305_155472394_155472514_155472600_155472798_155472930_155473281_155473398_155473524_155473633_155473750_155474067_155474465_155474546_155474673_155474767_155474939_155475084_155475190_155475272_155475369_155475782_155475921_155475999
ENSMUSG00000074653.11_12	chr3	-	3301	8	NIC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	1	147	intron_retention	FALSE	canonical	3	40	junction_6	7.94110977696417	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAAGGCTCATGATACCT	NA	False	NA	-7	True	NA	NA	NA	30753991	30733059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
ENSMUSG00000074653.11_16	chr3	-	2625	1	FSM	ENSMUSG00000074653.11	ENSMUST00000194840.2	1822	1	-67	-736	-5	736	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGGAGAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	30753984	30751359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_30751400_30754000
ENSMUSG00000074653.11_17	chr3	-	718	2	FSM	ENSMUSG00000074653.11	ENSMUST00000130731.2	705	2	-11	-2	9	2	multi-exon	FALSE	canonical	3	18	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGCCTTCAGTTTGTA	NA	False	NA	-5	True	AGTAAA	-22	NA	30753970	30752268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_30752864_30753847
ENSMUSG00000074653.11_2	chr3	-	4446	9	NNC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	-6	2830	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	17.8985858379929	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTTGAGTTTGTTTT	NA	False	NA	-16	True	AATAAA	-25	NA	30753985	30730376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745474_30749635_30749780_30753847
ENSMUSG00000074653.11_3	chr3	-	4412	9	FSM	ENSMUSG00000074653.11	ENSMUST00000126658.8	1586	9	-6	-2820	-6	2820	multi-exon	FALSE	canonical	3	40	junction_7	9.37333318515884	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCTACCAGTATATTTG	NA	False	NA	-26	True	AATAAA	-15	NA	30753985	30730386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
ENSMUSG00000074653.11_7	chr3	-	4404	9	NNC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	-6	2830	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_8	17.8815547422477	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTTGAGTTTGTTTT	NA	False	NA	-16	True	AATAAA	-25	NA	30753985	30730376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749762_30753847
ENSMUSG00000074656.13_0	chr2	-	2349	10	FSM	ENSMUSG00000074656.13	ENSMUST00000166171.8	2312	10	-38	1	11	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	4169.46393510879	1506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTAGTGCTCCATTGCTT	3747	False	NA	-17	True	AATAAA	-23	NA	154734740	154713338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_154714091_154714159_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUSG00000074656.13_1	chr2	-	1400	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	115	1027	11	-1019	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	8557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTTGAAGTCGATCTG	3747	False	NA	-25	True	ATTAAA	-15	NA	154734740	154714356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUSG00000074657.6_0	chr10	-	3492	29	NNC	ENSMUSG00000074657.6	novel	6295	29	NA	NA	-20	-3	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_1	9.36307064144743	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGACTTGCTGTTGCTTCTT	NA	False	NA	-3	True	AATAAA	-13	NA	127098984	127061567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_127061724_127065613_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
ENSMUSG00000074657.6_1	chr10	-	2715	1	ISM	ENSMUSG00000074657.6	ENSMUST00000099172.5	6295	29	34937	1	34669	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCTGTTGCTTCTTAT	5998	False	NA	-1	True	AATAAA	-15	NA	127064280	127061565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_127061600_127064300
ENSMUSG00000074657.6_13	chr10	-	4033	28	FSM	ENSMUSG00000074657.6	ENSMUST00000217895.2	3996	28	-45	8	-30	-8	multi-exon	FALSE	canonical	3	28	junction_13	6.98675996544999	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCAAGGGCTGCTGTCC	NA	False	NA	-15	True	ATTAAA	-10	NA	127098994	127064926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
ENSMUSG00000074657.6_2	chr10	-	5566	29	NNC	ENSMUSG00000074657.6	novel	6295	29	NA	NA	-18	-3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	8.8746227283997	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGACTTGCTGTTGCTTCTT	NA	False	NA	-3	True	AATAAA	-13	NA	127098982	127061567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_127063800_127065613_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
ENSMUSG00000074657.6_3	chr10	-	6058	29	FSM	ENSMUSG00000074657.6	ENSMUST00000099172.5	6295	29	231	6	-22	-6	multi-exon	FALSE	canonical	3	9	junction_1	8.75808664222118	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACGACTTGCTGTTGCTT	NA	False	NA	-6	True	AATAAA	-10	NA	127098986	127061570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_127064291_127065613_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
ENSMUSG00000074671.7_0	chr2	-	3021	1	FSM	ENSMUSG00000074671.7	ENSMUST00000099194.4	3072	1	41	10	41	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAATAATTTAGGTCAT	NA	False	NA	NA	False	AATAAA	-17	NA	153067320	153064299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_153064300_153067300
ENSMUSG00000074682.5_0	chr2	-	2838	1	FSM	ENSMUSG00000074682.5	ENSMUST00000099207.5	3073	1	234	1	234	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	522	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACTGTGTATTTTTTTTT	NA	False	NA	-3	True	AATAAA	-15	NA	152256713	152253875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_152253900_152256700
ENSMUSG00000074698.11_0	chr2	+	4152	13	FSM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	36	18	-1	-18	multi-exon	FALSE	canonical	2	55	junction_1	32.1674222709181	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATTTAAATCAATGAAATG	NA	False	NA	1	True	AATAAA	-2	NA	152068794	152123754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
ENSMUSG00000074698.11_17	chr2	+	3211	4	ISM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	47252	12	47178	-12	3prime_fragment	FALSE	canonical	3	119	junction_1	16.0485374896143	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAATGAAATGTCCATG	5176	False	NA	7	True	AATAAA	-8	NA	152116010	152123760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_152116114_152117317_152117467_152118866_152118954_152120888
ENSMUSG00000074698.11_19	chr2	+	1743	1	ISM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	53263	8	53189	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGAAATGTCCATGCAGC	NA	False	NA	11	True	AATAAA	-12	NA	152122021	152123764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_152122000_152123800
ENSMUSG00000074731.4_0	chr2	-	7857	6	Fusion	ENSMUSG00000074731.4_ENSMUSG00000068130.12	novel	2922	4	NA	NA	21	4741	intron_retention	FALSE	canonical	1	2	junction_3	13.8996402831152	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTAATTACAACAGCC	NA	False	NA	NA	False	AATAAA	-7	NA	150326990	150244319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_-_150251710_150252860_150252922_150253130_150253258_150316415_150316477_150316675_150316803_150326899
ENSMUSG00000074731.4_3	chr2	-	2328	4	FSM	ENSMUSG00000074731.4	ENSMUST00000109914.2	2734	4	3	403	3	-403	multi-exon	FALSE	canonical	3	25	junction_1	6.12825877028341	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAAATTGTTAGGGGC	NA	False	NA	NA	False	AATAAA	-11	NA	150327008	150313313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_150315345_150316415_150316477_150316675_150316803_150326899
ENSMUSG00000074731.4_4	chr2	-	1019	1	ISM	ENSMUSG00000074731.4	ENSMUST00000109914.2	2734	4	13008	74	13008	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAAGGCAATTCTTAG	NA	False	NA	NA	False	NA	NA	NA	150314003	150312984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_150313000_150314000
ENSMUSG00000074733.15_10	chr19	-	2421	1	Genic_Genomic	ENSMUSG00000074733.15	novel	NA	NA	NA	NA	2863	175	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	9472	False	NA	NA	False	NA	NA	NA	61113139	61110718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_-_61110700_61113100
ENSMUSG00000074733.15_12	chr19	-	454	3	FSM	ENSMUSG00000074733.15	ENSMUST00000143264.8	4825	3	-6	4377	-1	170	multi-exon	FALSE	canonical	3	41	junction_2	7	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGCTTTGAGAATTACT	NA	False	NA	NA	False	NA	NA	NA	61129234	61115270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_61115506_61115875_61116003_61129142
ENSMUSG00000074733.15_15	chr19	-	536	4	FSM	ENSMUSG00000074733.15	ENSMUST00000180544.3	2568	4	-13	2045	-5	-756	multi-exon	FALSE	canonical	3	24	junction_1	12.675435561221	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTTATGAGTGTAATCA	NA	False	NA	NA	False	NA	NA	NA	61129213	61108613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_61108891_61115444_61115506_61115875_61116003_61129142
ENSMUSG00000074733.15_4	chr19	-	2576	4	FSM	ENSMUSG00000074733.15	ENSMUST00000205854.2	466	4	28	-2138	1	-2	multi-exon	FALSE	canonical	2	4	junction_1	21.5148527508066	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCTTTGGTCATGG	NA	False	NA	-6	True	NA	NA	NA	61129227	61103423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_61105727_61115444_61115506_61115875_61116003_61129142
ENSMUSG00000074734.4_0	chr10	-	2606	1	FSM	ENSMUSG00000074734.4	ENSMUST00000099261.3	2254	1	-356	4	-356	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTCTGTTTTATGTTTT	NA	False	NA	NA	False	AATAAA	-38	NA	115950178	115947572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_115947600_115950200
ENSMUSG00000074736.11_0	chr2	+	1980	4	FSM	ENSMUSG00000074736.11	ENSMUST00000109935.8	2050	4	17	53	17	-53	multi-exon	FALSE	canonical	1	4	junction_1	14.290634073484	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTTTGCTTACGACTT	NA	False	NA	NA	False	NA	NA	NA	149672724	149846259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_149672846_149741337_149741896_149772824_149772963_149845096
ENSMUSG00000074736.11_2	chr2	+	1925	4	NIC	ENSMUSG00000074736.11	novel	620	2	NA	NA	90	-53	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	14.7044966667418	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTTTGCTTACGACTT	NA	False	NA	NA	False	NA	NA	NA	149672931	149846259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_149672998_149741337_149741896_149772824_149772963_149845096
ENSMUSG00000074738.3_0	chr4	+	2115	1	FSM	ENSMUSG00000074738.3	ENSMUST00000099265.3	2140	1	22	3	22	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAAACCACTGTCTTGTG	NA	False	NA	5	True	NA	NA	NA	155778820	155780935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155778800_155780900
ENSMUSG00000074738.3_2	chr4	+	1667	2	Genic_Genomic	ENSMUSG00000074738.3	novel	2140	1	NA	NA	18	-5	multi-exon	FALSE	canonical	2	10	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCAAAACCACTGTCTTG	NA	False	NA	3	True	NA	NA	NA	155778816	155780933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_155780366_155780815
ENSMUSG00000074746.4_1	chr19	-	5988	5	FSM	ENSMUSG00000074746.4	ENSMUST00000099274.4	5982	5	-17	11	-17	-11	multi-exon	FALSE	canonical	3	114	junction_1	13.8021737418423	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCACGGAAAATAAGAATAT	NA	False	NA	-44	True	AATAAA	-5	NA	59334229	59285620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_59290141_59293589_59293753_59303689_59303793_59316182_59316306_59333150
ENSMUSG00000074746.4_2	chr19	-	3241	1	ISM	ENSMUSG00000074746.4	ENSMUST00000099274.4	5982	5	45356	6	45356	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAATAAGAATATCTTCA	8049	False	NA	-39	True	AATAAA	-10	NA	59288856	59285615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_59285600_59288900
ENSMUSG00000074746.4_8	chr19	-	2008	4	ISM	ENSMUSG00000074746.4	ENSMUST00000099274.4	5982	5	-16	7439	-16	-7439	5prime_fragment	FALSE	canonical	3	135	junction_2	6.23609564462324	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAATAAAAATAAAAATG	NA	False	NA	NA	False	NA	NA	NA	59334228	59293048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_59293753_59303689_59303793_59316182_59316306_59333150
ENSMUSG00000074748.4_0	chr10	-	3552	1	FSM	ENSMUSG00000074748.4	ENSMUST00000099276.4	3566	1	-1	15	-1	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	677	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATTTAAAAGAAATATTT	NA	False	NA	NA	False	AATAAA	-29	NA	112764901	112761349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_112761300_112764900
ENSMUSG00000074749.11_0	chr2	+	2150	14	FSM	ENSMUSG00000074749.11	ENSMUST00000099278.9	2183	14	25	8	-20	-3	multi-exon	FALSE	canonical	3	86	junction_6	16.1728825562271	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAAAGCGTCACTGTAA	NA	False	NA	NA	False	AATAAA	-7	NA	146697808	146812009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_146697964_146703039_146703103_146705626_146705790_146712685_146712767_146730940_146731587_146732900_146733205_146777722_146777805_146783929_146784096_146784836_146784900_146792442_146792509_146794897_146794985_146798119_146798217_146811463_146811508_146811876
ENSMUSG00000074749.11_2	chr2	+	2068	13	NIC	ENSMUSG00000074749.11	novel	2183	14	NA	NA	-19	-3	combination_of_known_junctions	FALSE	canonical	3	7	junction_3	33.9094996522607	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAAAGCGTCACTGTAA	NA	False	NA	NA	False	AATAAA	-7	NA	146697809	146812009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_146697964_146703039_146703103_146705626_146705790_146730940_146731587_146732900_146733205_146777722_146777805_146783929_146784096_146784836_146784900_146792442_146792509_146794897_146794985_146798119_146798217_146811463_146811508_146811876
ENSMUSG00000074749.11_3	chr2	+	2535	6	ISM	ENSMUSG00000074749.11	ENSMUST00000099278.9	2183	14	29	77686	-16	3116	5prime_fragment	FALSE	canonical	3	96	junction_5	17.8146007533147	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTCAAAAAACCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146697812	146734331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_146697964_146703039_146703103_146705626_146705790_146712685_146712767_146730940_146731587_146732900
ENSMUSG00000074754.5_0	chr2	+	441	2	FSM	ENSMUSG00000074754.5	ENSMUST00000136628.2	471	2	21	9	21	-9	multi-exon	FALSE	canonical	3	228	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATGTGCAACCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	144435994	144437277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_144436126_144436967
ENSMUSG00000074768.7_0	chr13	-	1898	8	FSM	ENSMUSG00000074768.7	ENSMUST00000099309.6	2490	8	360	232	-35	-232	multi-exon	FALSE	canonical	1	3	junction_5	5.15474815790535	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTTCAAGACAATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	93774109	93753414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_93754171_93756589_93756819_93757901_93758085_93761321_93761470_93761804_93761997_93763754_93763874_93769743_93769877_93773971
ENSMUSG00000074781.6_0	chr10	+	1216	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	0	2651	0	0	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	1135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGCCTTTGTACAGTTT	NA	False	NA	NA	False	AGTAAA	-18	NA	95351006	95378868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
ENSMUSG00000074785.6_3	chr10	-	6083	31	FSM	ENSMUSG00000074785.6	ENSMUST00000099337.5	7302	31	-141	1360	-141	-1360	multi-exon	TRUE	canonical	0	0	junction_5	2.01218510303821	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAATTGTTGTTCACATT	NA	False	NA	-3	True	AATAAA	-19	NA	94780838	94628087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_94629153_94630277_94630353_94630447_94630589_94632231_94632380_94633845_94634010_94635132_94635241_94635335_94635368_94637322_94637378_94646526_94646631_94648984_94649163_94663032_94663180_94667204_94667404_94669149_94669275_94669509_94669549_94673363_94673468_94673779_94673882_94677326_94677430_94679584_94679771_94680043_94680248_94683376_94683477_94685683_94685864_94688450_94688591_94700578_94700675_94700792_94700896_94702772_94702861_94706836_94706982_94718379_94718495_94742326_94742428_94746397_94746533_94758491_94758633_94779378
ENSMUSG00000074785.6_5	chr10	-	2974	14	ISM	ENSMUSG00000074785.6	ENSMUST00000099337.5	7302	31	-19	52955	-19	-6610	5prime_fragment	FALSE	canonical	0	0	junction_4	2.25844896244665	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATTACTAGAAACCAG	NA	False	NA	NA	False	AATAAA	-20	NA	94780716	94679682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_94679771_94680043_94680248_94683376_94683477_94685683_94685864_94688450_94688591_94700578_94700675_94700792_94700896_94702772_94702861_94706836_94706982_94718379_94718495_94742326_94742428_94746397_94746533_94758491_94758633_94779378
ENSMUSG00000074793.11_0	chr2	+	184	1	Genic_Genomic	ENSMUSG00000074793.11	novel	NA	NA	NA	NA	9660	1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAATCATGGGACA	NA	False	NA	NA	False	NA	NA	NA	130979073	130979257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_130979100_130979300
ENSMUSG00000074794.11_1	chr13	+	4094	8	FSM	ENSMUSG00000074794.11	ENSMUST00000099356.10	4101	8	3	4	3	3	multi-exon	TRUE	canonical	3	173	junction_5	15.8461995701281	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTGTTTGGCAGTTTAT	NA	False	NA	26	True	AATAAA	-26	NA	81031531	81044157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_81032049_81035524_81035607_81037207_81037356_81038214_81038318_81038652_81038910_81039180_81039344_81039606_81039762_81041488
ENSMUSG00000074794.11_16	chr13	+	1911	1	ISM	ENSMUSG00000074794.11	ENSMUST00000099356.10	4101	8	10718	4	3610	3	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTGTTTGGCAGTTTAT	NA	False	NA	26	True	AATAAA	-26	NA	81042246	81044157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_81042200_81044200
ENSMUSG00000074796.11_0	chr2	-	3149	21	FSM	ENSMUSG00000074796.11	ENSMUST00000099362.11	3196	21	46	1	-4	-1	multi-exon	FALSE	canonical	3	76	junction_7	21.856063231973	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCAGTCGCCCTCCCTG	NA	False	NA	-2	True	AATAAA	-21	NA	130539393	130526033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130538567_130538676_130539278
ENSMUSG00000074796.11_4	chr2	-	3041	20	NIC	ENSMUSG00000074796.11	novel	3196	21	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	3	23	junction_19	27.8455375458768	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCAGTCGCCCTCCCTG	NA	False	NA	-2	True	AATAAA	-21	NA	130539393	130526033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130539278
ENSMUSG00000074796.11_41	chr2	-	2991	19	NIC	ENSMUSG00000074796.11	novel	3196	21	NA	NA	-4	-1	combination_of_known_splicesites	FALSE	canonical	2	3	junction_16	36.1015371924011	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCAGTCGCCCTCCCTG	NA	False	NA	-2	True	AATAAA	-21	NA	130539393	130526033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130534085_130534251_130537960_130538024_130539278
ENSMUSG00000074796.11_7	chr2	-	1099	5	ISM	ENSMUSG00000074796.11	ENSMUST00000099362.11	3196	21	11856	1	2902	-1	3prime_fragment	FALSE	canonical	3	116	junction_4	16.4544826719043	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCAGTCGCCCTCCCTG	NA	False	NA	-2	True	AATAAA	-21	NA	130527583	130526033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414
ENSMUSG00000074797.12_1	chr2	+	1175	8	FSM	ENSMUSG00000074797.12	ENSMUST00000103193.5	1390	8	214	1	-2	-1	multi-exon	TRUE	canonical	3	338	junction_5	87.1842992792643	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGTCTGTCTTGAGTT	5449	False	NA	17	True	AATAAA	-17	NA	130509743	130523533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_130509856_130513320_130513379_130513475_130513541_130513979_130514054_130516158_130516191_130517548_130517665_130521254_130521332_130522892
ENSMUSG00000074800.5_0	chr13	+	352	1	FSM	ENSMUSG00000074800.5	ENSMUST00000099371.5	276	1	-21	-55	-21	55	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3142	False	NA	NA	False	AATAAA	-15	NA	75792993	75793345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_75793000_75793300
ENSMUSG00000074802.12_0	chr10	-	3271	11	FSM	ENSMUSG00000074802.12	ENSMUST00000105298.3	6305	11	18	3016	5	180	multi-exon	FALSE	canonical	3	41	junction_2	9.03382532485547	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAGGTTTTAATGATCTT	NA	False	NA	NA	False	ATTAAA	-21	NA	89279811	89248140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270154_89270224_89272364_89272472_89279716
ENSMUSG00000074802.12_1	chr10	-	5461	11	FSM	ENSMUSG00000074802.12	ENSMUST00000099374.9	6748	11	31	1256	18	-816	multi-exon	FALSE	canonical	3	18	junction_8	13.3450365304858	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCTGATGTACCTGGA	NA	False	NA	NA	False	AATAAA	-16	NA	89279798	89245940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270151_89270224_89272364_89272472_89279716
ENSMUSG00000074802.12_7	chr10	-	1194	1	ISM	ENSMUSG00000074802.12	ENSMUST00000099374.9	6748	11	33622	329	23497	111	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTTTTTATTGTATT	NA	False	NA	94	True	GATAAA	-29	NA	89246207	89245013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_89245000_89246200
ENSMUSG00000074807.4_0	chr2	-	1803	1	FSM	ENSMUSG00000074807.4	ENSMUST00000099385.3	1133	1	-280	-390	39	390	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACATTTGAGTATTGCTG	9162	False	NA	NA	False	AATAAA	-20	NA	128809925	128808122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_128808100_128809900
ENSMUSG00000074811.4_0	chr19	+	2650	1	FSM	ENSMUSG00000074811.4	ENSMUST00000099393.4	2666	1	-4	20	-4	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATACTCACAGAGGTTT	NA	False	NA	5	True	AATACA	-11	NA	45991942	45994592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_45991900_45994600
ENSMUSG00000074812.13_0	chr2	+	901	4	ISM	ENSMUSG00000074812.13	ENSMUST00000144559.8	1246	11	1244	3867	1244	731	internal_fragment	FALSE	canonical	1	1	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCGTGCCATAAGAGAGCT	4872	False	NA	NA	False	AATAAA	-17	NA	128434435	128436517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_128434624_128434804_128434922_128435756_128435874_128436038
ENSMUSG00000074813.15_2	chr2	-	2632	2	FSM	ENSMUSG00000074813.15	ENSMUST00000239199.2	1105	2	497	-2024	-8	2024	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTTGTGTGCTTAAGT	NA	False	NA	NA	False	NA	NA	NA	128271294	128211996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_128214348_128271013
ENSMUSG00000074817.3_0	chr5	-	4218	1	FSM	ENSMUSG00000074817.3	ENSMUST00000099400.3	4239	1	-20	41	-20	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACACAATAAAAATAAATG	NA	False	NA	NA	False	NA	NA	NA	142515851	142511633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_142511600_142515900
ENSMUSG00000074818.14_2	chr19	-	473	1	ISM	ENSMUSG00000074818.14	ENSMUST00000038901.6	1799	6	2636	1	2636	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTTGGTCTGACTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	45015818	45015345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_45015300_45015800
ENSMUSG00000074818.14_3	chr19	-	4081	17	NNC	ENSMUSG00000074818.14	novel	3161	17	NA	NA	-891	-2	intron_retention	FALSE	canonical	2	6	junction_9	4.93987284755387	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTTTGGTCTGACTTC	NA	False	NA	NA	False	AATAAA	-17	NA	45035047	45015346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_45016414_45016817_45016919_45017162_45017763_45018178_45018251_45018418_45018511_45018636_45018729_45021450_45021627_45022073_45022125_45024495_45024694_45025169_45025566_45025977_45026039_45027605_45027754_45028011_45028189_45028599_45028775_45029001_45029143_45033856_45034357_45035013
ENSMUSG00000074818.14_4	chr19	-	4174	17	NNC	ENSMUSG00000074818.14	novel	3161	17	NA	NA	-902	-2	intron_retention	FALSE	canonical	0	0	junction_10	6.54670718758675	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTTTGGTCTGACTTC	NA	False	NA	NA	False	AATAAA	-17	NA	45035058	45015346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_45016414_45016817_45016919_45017162_45017763_45018178_45018251_45018418_45018511_45018636_45018729_45021450_45021627_45022073_45022125_45024495_45024694_45025169_45025648_45025977_45026039_45027605_45027754_45028011_45028189_45028599_45028775_45029001_45029143_45033856_45034357_45035013
ENSMUSG00000074818.14_8	chr19	-	3605	16	FSM	ENSMUSG00000074818.14	ENSMUST00000169459.4	3265	16	243	-583	169	-1	multi-exon	TRUE	canonical	2	6	junction_9	4.99955553580071	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTTGGTCTGACTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	45033913	45015345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_45016414_45016817_45016919_45017162_45017763_45018178_45018251_45018418_45018511_45018636_45018729_45021450_45021627_45022073_45022125_45024495_45024694_45025169_45025566_45025977_45026039_45027605_45027754_45028011_45028189_45028599_45028775_45029001_45029143_45033856
ENSMUSG00000074825.5_0	chr2	-	3656	2	FSM	ENSMUSG00000074825.5	ENSMUST00000110386.2	1898	2	-126	-1632	10	-5	multi-exon	FALSE	canonical	3	11	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGTATGAACTGGAATC	NA	False	NA	-16	True	AATAAA	-17	NA	126985352	126980696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_126984135_126985134
ENSMUSG00000074829.11_0	chr9	-	2583	4	FSM	ENSMUSG00000074829.11	ENSMUST00000177714.8	2623	4	28	12	3	-12	multi-exon	FALSE	non_canonical	0	0	junction_2	8.73053390247253	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAATGATATACTAT	NA	False	NA	NA	False	AATAAA	-11	NA	124075298	124054445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_124056732_124057727_124057789_124057987_124058115_124075189
ENSMUSG00000074829.11_2	chr9	-	2656	5	FSM	ENSMUSG00000074829.11	ENSMUST00000185949.2	634	5	5	-2027	5	-12	multi-exon	FALSE	non_canonical	0	0	junction_2	8.44097150806707	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAATGATATACTAT	NA	False	NA	NA	False	AATAAA	-11	NA	124075296	124054445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_124056732_124057727_124057789_124057987_124058115_124074305_124074381_124075189
ENSMUSG00000074829.11_4	chr9	-	3457	4	FSM	ENSMUSG00000074829.11	ENSMUST00000189915.7	683	4	-759	-2015	13	-12	multi-exon	FALSE	non_canonical	0	0	junction_2	9.46337971105226	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAATGATATACTAT	NA	False	NA	NA	False	AATAAA	-11	NA	124075288	124054445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_124056732_124057727_124057789_124057987_124058115_124074305
ENSMUSG00000074829.11_7	chr9	-	2636	5	FSM	ENSMUSG00000074829.11	ENSMUST00000071300.13	795	5	-16	-1825	13	-12	multi-exon	FALSE	non_canonical	0	0	junction_2	8.95823643358446	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAATGATATACTAT	NA	False	NA	NA	False	AATAAA	-11	NA	124075288	124054445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_124056732_124057727_124057789_124057987_124058115_124067285_124067349_124075189
ENSMUSG00000074830.5_24	chr13	-	3061	4	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-7482	1304	at_least_one_novel_splicesite	FALSE	canonical	3	150	junction_1	38.262252939418	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	-4	True	NA	NA	NA	66828875	66816687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_66819455_66821007_66821069_66821267_66821395_66828769
ENSMUSG00000074830.5_58	chr13	-	2306	6	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9915	348	intron_retention	FALSE	canonical	3	25	junction_5	11.6961532137708	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACTGCTTGTCTGAGAT	NA	False	NA	NA	False	AATAAA	-13	NA	66846331	66830554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_66832305_66833395_66833450_66834628_66834801_66836256_66836399_66841838_66841917_66846221
ENSMUSG00000074832.12_13	chr13	-	2087	1	Genic_Genomic	ENSMUSG00000074832.12	novel	NA	NA	NA	NA	2086	167	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	9186	False	NA	-5	True	NA	NA	NA	66579870	66577783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_66577800_66579900
ENSMUSG00000074832.12_14	chr13	-	2801	4	FSM	ENSMUSG00000074832.12	ENSMUST00000172579.4	2587	4	-47	-167	-7	167	multi-exon	FALSE	canonical	3	86	junction_1	43.8254111979188	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	-5	True	NA	NA	NA	66589186	66577783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_66580291_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_15	chr13	-	3992	3	ISM	ENSMUSG00000074832.12	ENSMUST00000173583.8	515	5	-7	11608	-7	170	5prime_fragment	FALSE	canonical	3	147	junction_1	23	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGACTTAGCTCCATT	NA	False	NA	-2	True	NA	NA	NA	66589186	66577780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_66581540_66581739_66581867_66589080
ENSMUSG00000074862.12_0	chr10	+	2720	1	FSM	ENSMUSG00000074862.12	ENSMUST00000099442.4	2785	1	47	18	47	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAATAAAACAACAA	NA	False	NA	-21	True	AAAACA	-22	NA	81442905	81445625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81442900_81445600
ENSMUSG00000074863.6_3	chr13	-	2465	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221999.2	615	4	-26	-1824	1	-1	multi-exon	FALSE	canonical	3	52	junction_3	44.0176732183285	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGGTTCCTGGGAAAAAA	NA	False	NA	0	True	AATAAA	-19	NA	62832758	62819598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62821755_62823062_62823124_62823332_62823469_62832646
ENSMUSG00000074863.6_4	chr13	-	2453	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221996.2	2458	4	3	2	3	-2	multi-exon	FALSE	canonical	3	12	junction_3	60.1461183748008	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTGGTTCCTGGGAAAAA	NA	False	NA	-1	True	AATAAA	-18	NA	62832756	62819599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62821755_62823062_62823124_62823332_62823460_62832646
ENSMUSG00000074863.6_5	chr13	-	2645	6	NIC	ENSMUSG00000074863.6	novel	2859	7	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	94.4233022087239	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTGGTTCCTGGGAAAAA	6810	False	NA	-1	True	AATAAA	-18	NA	62860565	62819599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_62821755_62823062_62823124_62823332_62823460_62853514_62853576_62853943_62854071_62860451
ENSMUSG00000074863.6_7	chr13	-	2645	6	NIC	ENSMUSG00000074863.6	novel	559	6	NA	NA	10	-3	combination_of_known_junctions	FALSE	canonical	3	25	junction_3	87.9377052236411	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTGGTTCCTGGGAAAA	6818	False	NA	-2	True	AATAAA	-17	NA	62860557	62819600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_62821755_62823062_62823124_62823332_62823469_62853514_62853576_62853943_62854071_62860451
ENSMUSG00000074865.12_12	chr13	-	4264	3	ISM	ENSMUSG00000074865.12	ENSMUST00000101547.12	2147	4	35825	0	-2235	0	3prime_fragment	FALSE	canonical	3	40	junction_1	19	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTGTGTGGACCAGT	NA	False	NA	NA	False	NA	NA	NA	62670500	62664610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_62666545_62667985_62668047_62668231
ENSMUSG00000074865.12_13	chr13	-	386	1	ISM	ENSMUSG00000074865.12	ENSMUST00000222746.2	2206	3	41447	2	3269	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTGTGTGGACCAGT	NA	False	NA	NA	False	NA	NA	NA	62664996	62664610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_62664600_62665000
ENSMUSG00000074865.12_14	chr13	-	2133	4	NNC	ENSMUSG00000074865.12	novel	2147	4	NA	NA	-81977	-2	intron_retention	TRUE	non_canonical	0	0	junction_3	15.9234278833282	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCTTGTGTGTGGACCA	NA	False	NA	NA	False	NA	NA	NA	62800990	62664612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_62666545_62668231_62668359_62706300_62706310_62800925
ENSMUSG00000074865.12_16	chr13	-	2162	3	FSM	ENSMUSG00000074865.12	ENSMUST00000222746.2	2206	3	41	3	7	-1	multi-exon	FALSE	canonical	3	31	junction_1	2.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTTGTGTGTGGACCAG	NA	False	NA	NA	False	NA	NA	NA	62706402	62664611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62666545_62668231_62668359_62706300
ENSMUSG00000074865.12_19	chr13	-	2246	4	Fusion	ENSMUSG00000074865.12_ENSMUSG00000074863.6	novel	2147	4	NA	NA	4	0	intron_retention	FALSE	canonical	1	3	junction_3	30.6195289897731	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTGTGTGGACCAGT	NA	False	NA	NA	False	NA	NA	NA	62908519	62664610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr13_-_62666545_62667985_62668047_62668231_62668359_62908395
ENSMUSG00000074865.12_2	chr13	-	1668	4	FSM	ENSMUSG00000074865.12	ENSMUST00000222429.2	1653	4	-21	6	1	-6	multi-exon	FALSE	canonical	3	40	junction_2	51.4220013439989	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTTGGGTGCATATTT	NA	False	NA	-14	True	ATTAAA	-34	NA	62706442	62634465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62635805_62640180_62640241_62640621_62640749_62706300
ENSMUSG00000074865.12_23	chr13	-	2016	2	ISM	ENSMUSG00000074865.12	ENSMUST00000222746.2	2206	3	38130	2	-48	0	3prime_fragment	FALSE	canonical	3	31	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTGTGTGGACCAGT	NA	False	NA	NA	False	NA	NA	NA	62668313	62664610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_62666545_62668231
ENSMUSG00000074865.12_6	chr13	-	2195	4	NNC	ENSMUSG00000074865.12	novel	2147	4	NA	NA	-81977	-1	intron_retention	FALSE	canonical	3	28	junction_3	21.3124898175277	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTTGTGTGTGGACCAG	NA	False	NA	NA	False	NA	NA	NA	62800990	62664611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_62666545_62667985_62668047_62668231_62668359_62800916
ENSMUSG00000074865.12_9	chr13	-	2258	4	FSM	ENSMUSG00000074865.12	ENSMUST00000101547.12	2147	4	-112	1	6	-1	multi-exon	FALSE	canonical	3	36	junction_3	18.9267594221045	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTTGTGTGTGGACCAG	NA	False	NA	NA	False	NA	NA	NA	62706437	62664611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62666545_62667985_62668047_62668231_62668359_62706300
ENSMUSG00000074867.5_16	chr13	+	3074	4	FSM	ENSMUSG00000074867.5	ENSMUST00000099449.4	2571	4	13	-516	-4	516	multi-exon	FALSE	canonical	3	81	junction_1	97.7422915403335	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTTGTGTGTGGACCAG	NA	False	NA	NA	False	NA	NA	NA	62277742	62321749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963
ENSMUSG00000074867.5_50	chr13	+	1972	4	FSM	ENSMUSG00000074867.5	ENSMUST00000221618.2	449	4	-23	-1500	-23	495	multi-exon	FALSE	canonical	3	20	junction_3	4.92160768674447	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTGGACCAGTCATTTT	NA	False	NA	NA	False	NA	NA	NA	62367346	62384453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_62367452_62381070_62381198_62381382_62381444_62382774
ENSMUSG00000074884.13_0	chr2	+	504	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	189	2363	1	3	multi-exon	FALSE	canonical	3	5931	junction_1	722	1459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGCGCCTGGTTTGACT	NA	False	NA	0	True	ATTAAA	-17	NA	121279864	121281538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121279923_121280455_121280565_121281201
ENSMUSG00000074884.13_1	chr2	+	1142	2	FSM	ENSMUSG00000074884.13	ENSMUST00000134412.2	3105	2	16	1947	1	4	multi-exon	FALSE	canonical	3	5931	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGCGCCTGGTTTGACTG	NA	False	NA	1	True	ATTAAA	-18	NA	121279864	121281539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121279923_121280455
ENSMUSG00000074884.13_16	chr2	+	446	4	FSM	ENSMUSG00000027245.12	ENSMUST00000126764.2	961	4	154	361	-7	5	multi-exon	FALSE	canonical	3	4276	junction_2	190.202231556017	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCTTCAGTTTCA	NA	False	NA	25	True	AATAAA	-20	NA	121287597	121288792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121287773_121288126_121288183_121288472_121288525_121288629
ENSMUSG00000074884.13_2	chr2	+	527	3	FSM	ENSMUSG00000074884.13	ENSMUST00000099475.12	525	3	0	-2	0	2	multi-exon	FALSE	canonical	3	183	junction_2	2874	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGCGCCTGGTTTGAC	NA	False	NA	-1	True	ATTAAA	-16	NA	121279863	121281537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_121279923_121280455_121280565_121281178
ENSMUSG00000074886.12_3	chr13	+	2991	16	FSM	ENSMUSG00000074886.12	ENSMUST00000001115.16	2994	16	-2	5	-2	0	multi-exon	FALSE	non_canonical	0	0	junction_15	121.188264925097	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTGCCTGCCTCCTTTT	-9	True	NA	23	True	AATACA	-25	NA	55593148	55608735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599515_55599657_55599947_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607594
ENSMUSG00000074886.12_4	chr13	+	3440	16	FSM	ENSMUSG00000074886.12	ENSMUST00000099482.5	2169	16	-125	-1146	-2	0	multi-exon	FALSE	canonical	3	190	junction_15	75.6883669323687	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTGCCTGCCTCCTTTT	-9	True	NA	23	True	AATACA	-25	NA	55593148	55608735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599515_55599657_55599947_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607145
ENSMUSG00000074886.12_5	chr13	+	2992	16	FSM	ENSMUSG00000074886.12	ENSMUST00000224118.2	1997	16	-128	-867	-5	0	multi-exon	FALSE	canonical	3	104	junction_15	96.0563723376365	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTGCCTGCCTCCTTTT	-12	True	NA	23	True	AATACA	-25	NA	55593145	55608735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599515_55599657_55599947_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607596
ENSMUSG00000074887.5_1	chr7	+	1942	5	FSM	ENSMUSG00000074887.5	ENSMUST00000205748.2	1492	5	-4	-446	-4	446	multi-exon	FALSE	canonical	3	31	junction_2	99.780697031039	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTGGGGACACTCTTTGT	9994	False	NA	11	True	AATAAA	-13	NA	42863458	42876712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_42863572_42870265_42870330_42872998_42873126_42873324_42873386_42875135
ENSMUSG00000074887.5_19	chr7	+	2949	3	FSM	ENSMUSG00000074887.5	ENSMUST00000163106.2	810	3	-1186	-953	-1186	444	multi-exon	FALSE	canonical	3	215	junction_2	22.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGTTGGGGACACTCTTT	NA	False	NA	9	True	AATAAA	-11	NA	42871812	42876710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_42873126_42873324_42873386_42875135
ENSMUSG00000074887.5_2	chr7	+	1878	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	-4	-446	-4	446	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTGGGGACACTCTTTGT	9994	False	NA	11	True	AATAAA	-13	NA	42863458	42876712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
ENSMUSG00000074890.5_0	chr2	-	2134	1	FSM	ENSMUSG00000074890.5	ENSMUST00000110674.4	3056	1	-6	928	-6	-928	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTAGGACCTAAGGGTG	NA	False	NA	-9	True	AATAAA	-14	NA	120971140	120969006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120969000_120971100
ENSMUSG00000074895.11_0	chr13	+	2651	6	FSM	ENSMUSG00000074895.11	ENSMUST00000110003.9	2131	6	-518	-2	-503	2	multi-exon	FALSE	canonical	0	0	junction_2	1.01980390271856	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAACTTGGAATCTAAAT	NA	False	NA	NA	False	AATAAA	-10	NA	54931307	54936266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_54932376_54932621_54932718_54933290_54933355_54934431_54934546_54934661_54934802_54935097
ENSMUSG00000074895.11_2	chr13	+	1748	3	ISM	ENSMUSG00000074895.11	ENSMUST00000110003.9	2131	6	2271	8	2264	-8	3prime_fragment	FALSE	canonical	1	2	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTCTGGAACAAACTTG	NA	False	NA	NA	False	NA	NA	NA	54934096	54936256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_54934546_54934661_54934802_54935097
ENSMUSG00000074909.6_0	chr19	-	4563	1	FSM	ENSMUSG00000074909.6	ENSMUST00000099525.5	4575	1	11	1	-9	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTCCTTCTACTGTGT	NA	False	NA	-2	True	AATAAA	-20	NA	29790363	29785800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_29785800_29790400
ENSMUSG00000074909.6_2	chr19	-	3433	2	FSM	ENSMUSG00000074909.6	ENSMUST00000235906.2	917	2	-2	-2514	-2	-9	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTGTTGATTGTCCTTC	NA	False	NA	-10	True	AATAAA	-12	NA	29790356	29785808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_29789100_29790214
ENSMUSG00000074916.6_0	chr2	+	2069	1	FSM	ENSMUSG00000074916.6	ENSMUST00000099546.6	2090	1	15	6	-3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATGAGCAACTCTGTA	9727	False	NA	2	True	AATAAA	-13	NA	118756991	118759060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118757000_118759100
ENSMUSG00000074918.5_0	chr2	+	3044	1	FSM	ENSMUSG00000074918.5	ENSMUST00000149978.2	3053	1	7	2	7	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGTGTAAGTTGGTCA	NA	False	NA	2	True	AATACA	-18	NA	118576245	118579289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118576200_118579300
ENSMUSG00000074922.2_0	chr19	-	1352	1	FSM	ENSMUSG00000074922.2	ENSMUST00000099556.2	855	1	-99	-398	-99	398	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTTTAAAATTCCATAGT	NA	False	NA	NA	False	AGTAAA	-4	NA	24454819	24453467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_24453500_24454800
ENSMUSG00000074923.11_2	chr2	+	3660	10	FSM	ENSMUSG00000074923.11	ENSMUST00000110853.8	3677	10	17	0	17	0	multi-exon	FALSE	canonical	1	2	junction_3	1.56347191994114	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTGGGTTTTTCATTC	NA	False	NA	NA	False	ATTAAA	-12	NA	118507726	118528499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_118507783_118508203_118508310_118519277_118519487_118520214_118520872_118523707_118524206_118524347_118524482_118524774_118524902_118524995_118525122_118525687_118525823_118526887
ENSMUSG00000074925.5_0	chr19	+	2174	7	FSM	ENSMUSG00000074925.5	ENSMUST00000237333.2	12574	7	9	10391	9	265	multi-exon	FALSE	canonical	3	15	junction_4	3.54338193757822	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGCAAGGTTTTTTGTC	NA	False	NA	NA	False	AATAAA	-24	NA	23664801	23698641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_23664910_23671684_23671855_23680441_23680509_23683070_23683176_23686117_23686332_23695176_23695467_23697421
ENSMUSG00000074925.5_1	chr19	+	2469	5	ISM	ENSMUSG00000074925.5	ENSMUST00000237333.2	12574	7	9	20896	9	-9426	5prime_fragment	FALSE	canonical	3	15	junction_4	2.27760839478607	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGACTGTTCCTGTTGTTC	NA	False	NA	NA	False	AGTAAA	-19	NA	23664801	23688136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_23664910_23671684_23671855_23680441_23680509_23683070_23683176_23686117
ENSMUSG00000074925.5_3	chr19	+	2946	1	ISM	ENSMUSG00000074925.5	ENSMUST00000237333.2	12574	7	38545	2749	2695	-2749	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAAGCGCTATGTGTGT	NA	False	NA	11	True	AGTAAA	-14	NA	23703337	23706283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_23703300_23706300
ENSMUSG00000074925.5_4	chr19	+	2204	1	ISM	ENSMUSG00000074925.5	ENSMUST00000237333.2	12574	7	42030	6	6180	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATCCTTTAAGATTTAT	NA	False	NA	13	True	AATAAA	-20	NA	23706822	23709026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_23706800_23709000
ENSMUSG00000074925.5_5	chr19	+	1443	8	NIC	ENSMUSG00000074925.5	novel	12574	7	NA	NA	7	-4	combination_of_known_junctions	FALSE	canonical	1	1	junction_7	7.20544012166771	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAATCTATTTTTTAAA	NA	False	NA	NA	False	AATAAA	-9	NA	23664799	23698319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_23664910_23671684_23671855_23680441_23680509_23683070_23683176_23686117_23686332_23695176_23695467_23697421_23697719_23698129
ENSMUSG00000074968.12_0	chr2	-	1122	1	ISM	ENSMUSG00000074968.12	ENSMUST00000099623.10	6705	27	294594	7	105235	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTATAATTTGCACATGACA	NA	False	NA	-6	True	AATAAA	-12	NA	110486674	110485552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_110485600_110486700
ENSMUSG00000074994.7_1	chr2	-	6455	12	FSM	ENSMUSG00000074994.7	ENSMUST00000231375.2	9037	12	-221	2803	-221	-2803	multi-exon	FALSE	canonical	3	14	junction_3	32.5683007674032	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAGCACTTGATTTATA	NA	False	NA	NA	False	AATAAA	-10	NA	104647326	104587942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_104588951_104590838_104590935_104593155_104593309_104596303_104596402_104600387_104600526_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864_104620543_104625532_104625640_104646944
ENSMUSG00000074994.7_10	chr2	-	3604	6	ISM	ENSMUSG00000074994.7	ENSMUST00000117237.2	8973	12	28466	14288	28466	-14288	internal_fragment	FALSE	canonical	3	39	junction_1	22.5920339943087	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAATTAATCATCCTTC	NA	False	NA	-11	True	AATAAA	-9	NA	104618575	104599427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_104600526_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864
ENSMUSG00000074994.7_2	chr2	-	2668	1	ISM	ENSMUSG00000074994.7	ENSMUST00000117237.2	8973	12	59226	8	59226	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAATCAGAATGTGTT	2502	False	NA	NA	False	ATTAAA	-17	NA	104587815	104585147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_104585100_104587800
ENSMUSG00000074994.7_4	chr2	-	3013	10	ISM	ENSMUSG00000074994.7	ENSMUST00000117237.2	8973	12	29457	2798	29457	-2798	3prime_fragment	FALSE	canonical	3	14	junction_3	35.5996254661946	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACTTGATTTATAACTGA	NA	False	NA	NA	False	AATAAA	-15	NA	104617584	104587937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_104588951_104590838_104590935_104593155_104593309_104596303_104596402_104600387_104600526_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864
ENSMUSG00000074994.7_7	chr2	-	5660	8	NNC	ENSMUSG00000074994.7	novel	9037	12	NA	NA	-226	-15188	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	22.6337295708355	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTTTGTTTTATTTTGT	NA	False	NA	-8	True	AATAAA	-15	NA	104647331	104600327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_104601021_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864_104620543_104625532_104625640_104646944
ENSMUSG00000074994.7_8	chr2	-	3465	6	NNC	ENSMUSG00000074994.7	novel	8973	12	NA	NA	28200	-15188	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	24.838679514016	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTTTGTTTTATTTTGT	NA	False	NA	-8	True	AATAAA	-15	NA	104618841	104600327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_104601021_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864
ENSMUSG00000074994.7_9	chr2	-	5115	8	ISM	ENSMUSG00000074994.7	ENSMUST00000231375.2	9037	12	-174	15186	-174	-15186	5prime_fragment	FALSE	canonical	3	39	junction_1	21.0877660635502	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTGTTTTATTTTGTTG	NA	False	NA	-6	True	AATAAA	-17	NA	104647279	104600325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_104600526_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864_104620543_104625532_104625640_104646944
ENSMUSG00000075000.12_0	chr10	-	1871	4	NNC	ENSMUSG00000075000.12	novel	1813	4	NA	NA	19	-3	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	73.1619208787376	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTTTGTTGAGTATGAC	NA	False	NA	NA	False	AATAAA	-18	NA	67121065	67102470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_67103946_67105804_67105926_67111348_67111434_67120875
ENSMUSG00000075000.12_1	chr10	-	1787	4	FSM	ENSMUSG00000075000.12	ENSMUST00000077839.13	1813	4	23	3	23	-3	multi-exon	FALSE	canonical	3	129	junction_3	30.2691628926573	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTTTGTTGAGTATGAC	NA	False	NA	NA	False	AATAAA	-18	NA	67121061	67102470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_67103946_67105884_67105926_67111348_67111434_67120875
ENSMUSG00000075000.12_6	chr10	-	1180	1	ISM	ENSMUSG00000075000.12	ENSMUST00000077839.13	1813	4	17434	3	17309	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTTTGTTGAGTATGAC	NA	False	NA	NA	False	AATAAA	-18	NA	67103650	67102470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_67102500_67103600
ENSMUSG00000075012.5_0	chr2	-	2464	1	FSM	ENSMUSG00000075012.5	ENSMUST00000099678.5	3134	1	661	9	661	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTTAATTCATGAGGTT	NA	False	NA	NA	False	AATAAA	-17	NA	102282183	102279719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_102279700_102282200
ENSMUSG00000075023.12_3	chr2	-	2350	15	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-61372	-1	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_14	11.1785143768512	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCAGGCCTGCTTTATT	NA	False	NA	-2	True	AATAAA	-21	NA	93760874	93685707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93760610
ENSMUSG00000075023.12_4	chr2	-	3015	15	NIC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-210	-1	intron_retention	FALSE	canonical	1	2	junction_14	23.4539279161056	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCAGGCCTGCTTTATT	NA	False	NA	-2	True	AATAAA	-21	NA	93699712	93685707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93698783
ENSMUSG00000075023.12_5	chr2	-	2421	15	FSM	ENSMUSG00000075023.12	ENSMUST00000099690.4	2224	15	-207	10	-207	-4	multi-exon	FALSE	canonical	3	27	junction_14	17.5243271145093	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCCAGCTCCAGGCCT	NA	False	NA	-10	True	AATAAA	-13	NA	93699709	93685715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93699366
ENSMUSG00000075028.13_0	chr2	-	4205	7	NIC	ENSMUSG00000075028.13	novel	3744	8	NA	NA	-103	1000	combination_of_known_splicesites	FALSE	canonical	1	3	junction_6	1.59861050777091	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTCAACTTTCACATTGT	NA	False	NA	NA	False	AATACA	-18	NA	92876615	92801362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_92804528_92810855_92811044_92823708_92823777_92842971_92843235_92843657_92843762_92844109_92844235_92876323
ENSMUSG00000075028.13_1	chr2	-	1035	1	ISM	ENSMUSG00000075028.13	ENSMUST00000111272.3	3012	6	60312	0	28169	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGCTCCAGGATCTTT	NA	False	NA	NA	False	AATAAA	-28	NA	92816086	92815051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_92815100_92816100
ENSMUSG00000075028.13_2	chr2	-	3729	2	ISM	ENSMUSG00000075028.13	ENSMUST00000111272.3	3012	6	55170	3	23027	-3	3prime_fragment	FALSE	canonical	1	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCCAGGCTCCAGGATC	NA	False	NA	NA	False	AATAAA	-25	NA	92821228	92815054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_92817132_92819576
ENSMUSG00000075028.13_3	chr2	-	3353	7	NIC	ENSMUSG00000075028.13	novel	3012	6	NA	NA	-115	-13	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	1.91485421551268	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAACACAGCCAGG	NA	False	NA	NA	False	AATAAA	-15	NA	92876627	92815064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_92817132_92819576_92819999_92823708_92823777_92842971_92843235_92843657_92843762_92844109_92844235_92876323
ENSMUSG00000075033.5_0	chr16	-	2926	6	NNC	ENSMUSG00000075033.5	novel	6436	6	NA	NA	-102	-3252	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_1	2.13541565040626	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTCATGACAAGTATTT	NA	False	NA	NA	False	AATAAA	-11	NA	55715750	55663567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_55665090_55669974_55670182_55680668_55680743_55686158_55686914_55710944_55711213_55715650
ENSMUSG00000075033.5_1	chr16	-	2889	6	NNC	ENSMUSG00000075033.5	novel	6436	6	NA	NA	-103	-3252	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	2.24499443206436	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTCATGACAAGTATTT	NA	False	NA	NA	False	AATAAA	-11	NA	55715751	55663567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_55665090_55669974_55670182_55680668_55680743_55686158_55686914_55710944_55711175_55715650
ENSMUSG00000075040.10_1	chr2	-	3444	5	FSM	ENSMUSG00000075040.10	ENSMUST00000099714.10	3469	5	6	19	6	0	multi-exon	FALSE	canonical	3	3	junction_4	8.1967981553775	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGACAAAAG	NA	False	NA	NA	False	NA	NA	NA	91480118	91474032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91476819_91477940_91478192_91478360_91478423_91479495_91479771_91480048
ENSMUSG00000075040.10_10	chr2	-	3533	6	NIC	ENSMUSG00000075040.10	novel	3469	5	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	7.67854152818099	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGACAAAAG	NA	False	NA	NA	False	NA	NA	NA	91480116	91474032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_91476819_91477940_91478192_91478360_91478423_91479280_91479372_91479495_91479771_91480048
ENSMUSG00000075040.10_11	chr2	-	3784	5	NIC	ENSMUSG00000075040.10	novel	663	5	NA	NA	3	-12	intron_retention	FALSE	canonical	2	7	junction_4	6.87386354243376	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATCTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91480101	91474044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_91476819_91477940_91478192_91478360_91478423_91479280_91479372_91479495
ENSMUSG00000075040.10_16	chr2	-	1313	1	NIC	ENSMUSG00000075040.10	novel	3469	5	NA	NA	-9	-441	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91480114	91478801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_91478800_91480100
ENSMUSG00000075040.10_2	chr2	-	3366	2	ISM	ENSMUSG00000075040.10	ENSMUST00000099714.10	3469	5	1759	-136	215	136	intron_retention	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGGTATAAAGAGAACTG	NA	False	NA	NA	False	AATAAA	-18	NA	91478365	91473877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_91476819_91477940
ENSMUSG00000075040.10_5	chr2	-	2198	1	ISM	ENSMUSG00000075040.10	ENSMUST00000099714.10	3469	5	3894	19	2350	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGACAAAAG	NA	False	NA	NA	False	NA	NA	NA	91476230	91474032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_91474000_91476200
ENSMUSG00000075040.10_6	chr2	-	3721	4	FSM	ENSMUSG00000075040.10	ENSMUST00000111333.2	3740	4	19	0	7	0	multi-exon	FALSE	canonical	3	9	junction_3	6.54896090146283	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGACAAAAG	NA	False	NA	NA	False	NA	NA	NA	91480117	91474032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_91476819_91477940_91478192_91478360_91478423_91479495
ENSMUSG00000075040.10_9	chr2	-	3489	5	NIC	ENSMUSG00000075040.10	novel	3740	4	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	9.17877987534291	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGACAAAAG	NA	False	NA	NA	False	NA	NA	NA	91480101	91474032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_91476819_91477940_91478192_91478360_91478423_91479495_91479771_91479986
ENSMUSG00000075053.4_0	chr13	-	1269	1	FSM	ENSMUSG00000075053.4	ENSMUST00000099736.4	853	1	-11	-405	-11	405	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCACATTTGGAACACAAA	NA	False	NA	NA	False	AATAAA	-3	NA	18206189	18204920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_18204900_18206200
ENSMUSG00000075054.6_1	chr13	-	1338	1	ISM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	5363	5319	5117	2186	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTACCAGTCAAGACTTT	NA	False	NA	NA	False	AATAAA	-15	NA	18162571	18161233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_18161200_18162600
ENSMUSG00000075054.6_2	chr13	-	1847	3	FSM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	24	6873	3	632	multi-exon	FALSE	canonical	3	467	junction_2	27.5	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTTGCTCTACATTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	18167910	18162787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_18164368_18166212_18166335_18167765
ENSMUSG00000075054.6_4	chr13	-	1008	2	ISM	ENSMUSG00000075054.6	ENSMUST00000222796.2	1382	3	1354	62	1354	-62	3prime_fragment	FALSE	canonical	3	522	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTATTTATGTATTTATGA	NA	False	NA	NA	False	AATAAA	-20	NA	18166334	18163481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_18164368_18166212
ENSMUSG00000075054.6_7	chr13	-	174	1	FSM	ENSMUSG00000075054.6	ENSMUST00000222595.2	2749	1	1804	771	1579	-477	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAGAAAAAAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	18166109	18165935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_18165900_18166100
ENSMUSG00000075122.6_3	chr16	+	3104	6	ISM	ENSMUSG00000075122.6	ENSMUST00000231716.2	3173	7	3322	11	-50	-11	3prime_fragment	FALSE	canonical	1	1	junction_3	0.8	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAATGGATATTTGCTA	NA	False	NA	NA	False	AATAAA	-7	NA	38279244	38316686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_38279652_38294227_38294546_38299425_38299708_38302981_38303096_38306665_38306810_38314847
ENSMUSG00000075225.16_8	chr10	-	4343	4	ISM	ENSMUSG00000075225.16	ENSMUST00000189488.3	7260	48	103495	56021	-302	-14645	internal_fragment	FALSE	canonical	2	3	junction_1	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAAAAAATGGTAACATT	1239	False	NA	NA	False	AATAAA	-4	NA	41489135	41470865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_41474552_41481046_41481213_41482567_41482689_41488765
ENSMUSG00000075227.7_0	chr19	+	1268	1	FSM	ENSMUSG00000075227.7	ENSMUST00000162726.5	1281	1	11	2	11	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCAGCAGTGCCTTTTC	2544	False	NA	9	True	AATAAA	-20	NA	6111232	6112500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_6111200_6112500
ENSMUSG00000075229.12_0	chr16	+	667	5	FSM	ENSMUSG00000075229.12	ENSMUST00000164916.9	1073	5	396	10	1	-1	multi-exon	FALSE	canonical	3	859	junction_1	27.9284800875379	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTGTGTACATATTTATT	NA	False	NA	15	True	ATTAAA	-12	NA	35892450	35912480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_35892508_35903060_35903187_35905386_35905534_35910270_35910331_35912203
ENSMUSG00000075229.12_11	chr16	+	3178	2	ISM	ENSMUSG00000075229.12	ENSMUST00000099937.6	740	5	5785	1	-2144	-1	3prime_fragment	FALSE	canonical	3	907	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTGTGTACATATTTATT	NA	False	NA	15	True	ATTAAA	-12	NA	35907429	35912480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_35910331_35912203
ENSMUSG00000075229.12_2	chr16	+	5404	4	NIC	ENSMUSG00000075229.12	novel	1073	5	NA	NA	1	-1	intron_retention	FALSE	canonical	3	859	junction_1	29.9332590941915	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTGTGTACATATTTATT	NA	False	NA	15	True	ATTAAA	-12	NA	35892450	35912480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_35892508_35903060_35903187_35905386_35910331_35912203
ENSMUSG00000075232.7_0	chr10	-	3192	8	FSM	ENSMUSG00000075232.7	ENSMUST00000099945.6	3204	8	1	11	1	-11	multi-exon	FALSE	canonical	3	315	junction_3	48.542848734549	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAACATTGAGAAAGTTTT	NA	False	NA	-16	True	AATAAA	-18	NA	40178181	40163464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
ENSMUSG00000075232.7_1	chr10	-	1396	1	ISM	ENSMUSG00000075232.7	ENSMUST00000099945.6	3204	8	13325	8	12715	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGAGAAAGTTTTCTG	NA	False	NA	-13	True	AATAAA	-21	NA	40164857	40163461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_40163500_40164900
ENSMUSG00000075254.13_1	chr16	+	3385	8	ISM	ENSMUSG00000075254.13	ENSMUST00000232568.2	4187	17	43	34898	43	-8356	5prime_fragment	FALSE	canonical	2	6	junction_3	2.12852348939305	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTATATCCCTGTGTCAC	6866	False	NA	NA	False	ATTAAA	-16	NA	33504782	33552285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_33505226_33530769_33531070_33539876_33540216_33541018_33541373_33545794_33546014_33546670_33547967_33550846_33550964_33551968
ENSMUSG00000075254.13_13	chr16	+	5151	3	ISM	ENSMUSG00000075254.13	ENSMUST00000128105.2	3656	4	5209	-2715	4236	-27	3prime_fragment	FALSE	canonical	3	6	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGCTTTCTCTTACAAC	NA	False	NA	NA	False	AATAAA	-15	NA	33581128	33591919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_33581216_33583811_33583987_33587030
ENSMUSG00000075254.13_14	chr16	+	2114	1	ISM	ENSMUSG00000075254.13	ENSMUST00000152782.8	8161	15	84980	17	12923	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCTTACAACAAGCAAACGA	NA	False	NA	NA	False	AATAAA	-25	NA	33589815	33591929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_33589800_33591900
ENSMUSG00000075254.13_4	chr16	+	3630	9	NIC	ENSMUSG00000075254.13	novel	6714	17	NA	NA	33	-8316	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	3.91910385164772	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGTGTAATGTGCTC	6952	False	NA	NA	False	AAAAAG	-13	NA	33504868	33552325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_33505226_33527285_33527577_33530769_33531070_33539876_33540216_33541018_33541373_33545794_33546014_33546670_33547967_33550846_33550964_33551968
ENSMUSG00000075254.13_7	chr16	+	5683	17	FSM	ENSMUSG00000075254.13	ENSMUST00000232568.2	4187	17	82	-1578	-14	-443	multi-exon	FALSE	canonical	2	4	junction_13	3.21130814466628	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCCATGGGTCTTGTTT	6905	False	NA	NA	False	NA	NA	NA	33504821	33588761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_33505226_33530769_33531070_33539876_33540216_33541018_33541373_33545794_33546014_33546670_33547967_33550846_33550964_33551968_33552089_33555910_33556015_33558594_33558654_33558932_33559094_33562731_33562867_33570821_33570865_33571541_33571580_33581127_33581216_33583811_33583987_33587030
ENSMUSG00000075256.10_1	chr2	-	2454	4	FSM	ENSMUSG00000075256.10	ENSMUST00000130499.2	610	4	29	-1873	4	1873	multi-exon	FALSE	canonical	0	0	junction_3	3.2659863237109	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAAAAAACAGAAA	NA	False	NA	NA	False	TATAAA	-10	NA	79201205	79183258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_79185409_79191667_79191732_79199023_79199156_79201097
ENSMUSG00000075266.6_0	chr10	-	412	3	FSM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	31	1089	31	-1089	multi-exon	FALSE	canonical	3	2101	junction_1	71	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTAATGGCTTCTGAGT	NA	False	NA	-7	True	ATTAAA	-22	NA	30076525	30073093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_30073223_30074461_30074576_30076356
ENSMUSG00000075271.5_0	chr2	-	2644	1	FSM	ENSMUSG00000075271.5	ENSMUST00000099994.5	3721	1	201	876	201	-876	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATTTTTTACTGTTCAT	NA	False	NA	-17	True	AATAAA	-14	NA	75812110	75809466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_75809500_75812100
ENSMUSG00000075273.5_0	chr2	-	2551	1	FSM	ENSMUSG00000075273.5	ENSMUST00000099996.5	2737	1	165	21	165	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAATGAAAAAGAAAAGAA	NA	False	NA	NA	False	AGTAAA	-40	NA	75768764	75766213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_75766200_75768800
ENSMUSG00000075279.6_0	chr2	-	529	1	FSM	ENSMUSG00000075279.6	ENSMUST00000173086.2	580	1	9	42	9	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	74422244	74421715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_74421700_74422200
ENSMUSG00000075284.11_0	chr2	-	3432	8	FSM	ENSMUSG00000075284.11	ENSMUST00000094681.11	4728	8	301	995	46	-566	multi-exon	FALSE	canonical	3	33	junction_5	8.44671171376828	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACAATTTTTTTATTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	73359777	73260948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_73262810_73264373_73264488_73265289_73265503_73267297_73268036_73270320_73270501_73274788_73274919_73278192_73278282_73359670
ENSMUSG00000075284.11_12	chr2	-	4456	9	NIC	ENSMUSG00000075284.11	novel	4728	8	NA	NA	-19	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	21.8685704836873	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTCGACTTGTGGCTT	NA	False	NA	-8	True	AATAAA	-13	NA	73359745	73259961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_73262810_73264373_73264488_73265289_73265503_73267297_73268036_73270320_73270501_73274788_73274919_73278192_73278282_73341286_73341356_73359670
ENSMUSG00000075284.11_2	chr2	-	3160	8	NIC	ENSMUSG00000075284.11	novel	4728	8	NA	NA	10	-811	combination_of_known_junctions	FALSE	canonical	2	7	junction_7	16.5849698368672	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAATGGAAAGACAT	NA	False	NA	NA	False	AATAAA	-14	NA	73316803	73261193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_73262810_73264373_73264488_73265289_73265503_73267297_73268036_73270320_73270501_73274788_73274919_73278192_73278282_73316723
ENSMUSG00000075284.11_3	chr2	-	4445	8	FSM	ENSMUSG00000075284.11	ENSMUST00000102680.8	4032	8	14	-427	14	-2	multi-exon	FALSE	canonical	1	2	junction_7	18.1647786574312	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGACTTGTGGCTTTCTTGT	NA	False	NA	-2	True	AATAAA	-19	NA	73316093	73259955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_73262810_73264373_73264488_73265289_73265503_73267297_73268036_73270320_73270501_73274788_73274919_73278192_73278282_73315966
ENSMUSG00000075284.11_6	chr2	-	3736	4	ISM	ENSMUSG00000075284.11	ENSMUST00000102679.8	2039	8	16463	-2527	15194	-10	3prime_fragment	FALSE	canonical	3	52	junction_1	2.16024689946929	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGTGTCGACTTGTGGC	NA	False	NA	-10	True	AATAAA	-11	NA	73267860	73259963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_73262810_73264373_73264488_73265289_73265503_73267297
ENSMUSG00000075289.6_0	chr19	-	2726	3	ISM	ENSMUSG00000075289.6	ENSMUST00000167055.2	3968	10	5371	6	-80	-6	3prime_fragment	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAGTATCCGGAGTCCA	NA	False	NA	NA	False	AATAAA	-13	NA	4220107	4214328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4216564_4219526_4219808_4219897
ENSMUSG00000075289.6_1	chr19	-	2167	1	ISM	ENSMUSG00000075289.6	ENSMUST00000237815.2	2371	2	3536	2	2923	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATCCGGAGTCCAGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	4216491	4214324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4214300_4216500
ENSMUSG00000075296.6_1	chr19	+	1917	10	FSM	ENSMUSG00000075296.6	ENSMUST00000143380.3	2142	10	158	67	158	-67	multi-exon	TRUE	canonical	1	2	junction_3	1.85259244450367	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGTGGAATCTCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	4022485	4031579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4022614_4027498_4027662_4028060_4028172_4028413_4028535_4028652_4028739_4028850_4028933_4029229_4029617_4030005_4030173_4030691_4030792_4031007
ENSMUSG00000075304.3_0	chr2	+	1897	2	FSM	ENSMUSG00000075304.3	ENSMUST00000100043.3	2100	2	198	5	198	-5	multi-exon	FALSE	canonical	3	75	junction_1	0	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGCTGGTCTCCTCTGA	NA	False	NA	18	True	AATAAA	-35	NA	70305464	70308068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_70305661_70306367
ENSMUSG00000075304.3_4	chr2	+	1659	1	ISM	ENSMUSG00000075304.3	ENSMUST00000100043.3	2100	2	1143	5	1143	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGCTGGTCTCCTCTGA	NA	False	NA	18	True	AATAAA	-35	NA	70306409	70308068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_70306400_70308100
ENSMUSG00000075327.11_0	chr10	-	3105	3	FSM	ENSMUSG00000075327.11	ENSMUST00000100078.10	3226	3	114	7	114	0	multi-exon	FALSE	canonical	3	64	junction_2	10.5	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGGCATGTGATCGTTT	NA	False	NA	NA	False	AATAAA	-10	NA	4337994	4317081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_4319852_4324569_4324755_4337844
ENSMUSG00000075327.11_1	chr10	-	3080	3	FSM	ENSMUSG00000075327.11	ENSMUST00000100077.5	3086	3	4	2	4	-2	multi-exon	FALSE	canonical	3	11	junction_2	37	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATGTGATCGTTTTCTTG	NA	False	NA	NA	False	AATAAA	-15	NA	4337471	4317076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_4319852_4324569_4324755_4337351
ENSMUSG00000075327.11_3	chr10	-	3065	4	NNC	ENSMUSG00000075327.11	novel	3226	3	NA	NA	50	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	36.1509182302316	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGATCGTTTTCTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	4338058	4317075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_4319852_4324569_4324755_4337844_4337912_4338021
ENSMUSG00000075327.11_5	chr10	-	2035	1	FSM	ENSMUSG00000075327.11	ENSMUST00000215860.2	6794	1	4759	0	4759	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGGCATGTGATCGTTT	NA	False	NA	NA	False	AATAAA	-10	NA	4319116	4317081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_4317100_4319100
ENSMUSG00000075334.3_0	chr2	-	1441	1	FSM	ENSMUSG00000075334.3	ENSMUST00000100089.3	1460	1	9	10	9	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGGCTTCCTGGTAG	NA	False	NA	NA	False	AATAAA	-19	NA	53975555	53974114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_53974100_53975600
ENSMUSG00000075370.13_0	chr16	-	785	3	FSM	ENSMUSG00000075370.13	ENSMUST00000100136.4	870	3	82	3	82	0	multi-exon	FALSE	canonical	0	0	junction_2	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGAGAGTCTTGTCGAT	NA	False	NA	NA	False	AATAAA	-13	NA	16681767	16678537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_16678999_16680292_16680409_16681559
ENSMUSG00000075376.11_1	chr2	-	3198	1	ISM	ENSMUSG00000075376.11	ENSMUST00000112934.8	8948	22	49633	4	4301	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTTTTCTTAGTGT	NA	False	NA	-4	True	AATAAA	-17	NA	37263282	37260084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_37260100_37263300
ENSMUSG00000075376.11_2	chr2	-	9039	22	NIC	ENSMUSG00000075376.11	novel	8948	22	NA	NA	-81	-5	intron_retention	FALSE	canonical	0	0	junction_20	11.6766720944717	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTAAAAGTTGTTTTCTT	NA	False	NA	-9	True	AATAAA	-12	NA	37312996	37260089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_37265441_37266653_37266803_37266900_37267009_37267145_37267281_37267366_37267449_37267862_37267948_37268319_37268534_37268869_37269017_37271881_37272050_37272794_37273229_37275257_37275473_37279596_37279903_37288255_37288369_37289598_37289718_37289832_37289966_37290540_37290742_37295255_37295432_37299445_37299680_37301151_37301270_37304527_37304825_37309443_37309480_37312778
ENSMUSG00000075376.11_22	chr2	-	2751	10	ISM	ENSMUSG00000075376.11	ENSMUST00000112934.8	8948	22	-83	27071	-83	-249	5prime_fragment	FALSE	canonical	0	0	junction_8	15.3260852434302	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37312998	37287151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_37288369_37289598_37289718_37289832_37289966_37290540_37290742_37295255_37295432_37299445_37299680_37301151_37301270_37304527_37304825_37309443_37309480_37312778
ENSMUSG00000075376.11_23	chr2	-	3980	9	NIC	ENSMUSG00000075376.11	novel	8948	22	NA	NA	-82	-249	intron_retention	FALSE	canonical	0	0	junction_7	16.2538456987877	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37312997	37287151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_37289718_37289832_37289966_37290540_37290742_37295255_37295432_37299445_37299680_37301151_37301270_37304527_37304825_37309443_37309480_37312778
ENSMUSG00000075376.11_7	chr2	-	9013	22	FSM	ENSMUSG00000075376.11	ENSMUST00000112934.8	8948	22	-69	4	-69	0	multi-exon	TRUE	canonical	0	0	junction_20	12.7563953992798	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTTTTCTTAGTGT	NA	False	NA	-4	True	AATAAA	-17	NA	37312984	37260084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_37265441_37266672_37266803_37266900_37267009_37267145_37267281_37267366_37267449_37267862_37267948_37268319_37268534_37268869_37269017_37271881_37272050_37272794_37273229_37275257_37275473_37279596_37279903_37288255_37288369_37289598_37289718_37289832_37289966_37290540_37290742_37295255_37295432_37299445_37299680_37301151_37301270_37304527_37304825_37309443_37309480_37312778
ENSMUSG00000075389.4_0	chr11	-	1747	3	FSM	ENSMUSG00000075389.4	ENSMUST00000145437.2	646	3	-44	-1057	-44	1057	multi-exon	FALSE	canonical	1	1	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGGTTGCCGTGAGAT	6099	False	NA	NA	False	ATTAAA	-18	NA	120080722	120077475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_120078578_120079314_120079503_120080265
ENSMUSG00000075391.7_0	chr2	+	842	1	FSM	ENSMUSG00000075391.7	ENSMUST00000120770.2	555	1	-50	-237	-50	237	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGTTGTGTGACTTTAC	5838	False	NA	NA	False	NA	NA	NA	35230370	35231212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_35230400_35231200
ENSMUSG00000075394.5_0	chr15	+	1736	2	FSM	ENSMUSG00000075394.5	ENSMUST00000100164.5	1983	2	240	7	240	-7	multi-exon	FALSE	canonical	3	38	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTACGTCAATGTCTGA	6212	False	NA	23	True	AATAAA	-17	NA	102943060	102945271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102943588_102944062
ENSMUSG00000075394.5_1	chr15	+	2589	1	Genic_Genomic	ENSMUSG00000075394.5	novel	NA	NA	NA	NA	-138	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTACGTCAATGTCTGA	5834	False	NA	23	True	AATAAA	-17	NA	102942682	102945271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_102942700_102945300
ENSMUSG00000075415.14_2	chr2	-	2370	1	ISM	ENSMUSG00000075415.14	ENSMUST00000073879.12	8469	14	109817	3410	23459	-1421	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGTGTATTTTAAGTG	8100	False	NA	-15	True	AATAAA	-17	NA	30921997	30919627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_30919600_30922000
ENSMUSG00000075415.14_3	chr2	-	4697	16	NIC	ENSMUSG00000075415.14	novel	4726	17	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	84	junction_7	27.5474540061731	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGGTTCTCTGTTGTAT	4781	False	NA	-7	True	AATAAA	-16	NA	31032007	30916219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_30918896_30923041_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
ENSMUSG00000075415.14_33	chr2	-	5426	15	FSM	ENSMUSG00000075415.14	ENSMUST00000100208.9	1859	15	-193	-3374	1	-1430	multi-exon	FALSE	canonical	3	84	junction_6	25.508001945768	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGTGCTGTGTA	4781	False	NA	-24	True	AATAAA	-8	NA	31032007	30919636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
ENSMUSG00000075415.14_50	chr2	-	1966	9	FSM	ENSMUSG00000075415.14	ENSMUST00000113552.9	1910	9	-57	1	0	-1	multi-exon	FALSE	canonical	3	133	junction_4	13.559475469206	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTGTTTTGTGTCTTCT	4780	False	NA	-14	True	NA	NA	NA	31032008	30943247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
ENSMUSG00000075419.5_0	chr2	-	2078	1	FSM	ENSMUSG00000075419.5	ENSMUST00000100219.5	2104	1	-5	31	-5	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTTTTATTTTTGCTG	2243	False	NA	-7	True	AATAAA	-13	NA	30176351	30174273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30174300_30176400
ENSMUSG00000075467.5_0	chr2	-	725	3	NNC	ENSMUSG00000075467.5	novel	2916	3	NA	NA	14	-2171	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_2	135.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGGGCCTGGGCTCCTGTT	NA	False	NA	-20	True	AGTAAA	-19	NA	26242098	26240303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_26240571_26241346_26241491_26241784
ENSMUSG00000075467.5_1	chr2	-	719	3	FSM	ENSMUSG00000075467.5	ENSMUST00000028295.9	2916	3	25	2172	15	-2172	multi-exon	FALSE	canonical	3	313	junction_2	24.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCGGGCCTGGGCTCCTGT	NA	False	NA	-21	True	AGTAAA	-18	NA	26242097	26240304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26240571_26241346_26241487_26241784
ENSMUSG00000075467.5_2	chr2	-	579	2	FSM	ENSMUSG00000075467.5	ENSMUST00000125848.2	2766	2	20	2167	20	-2167	multi-exon	FALSE	canonical	3	60	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGGGCTCCTGTTTTTC	NA	False	NA	-16	True	AGTAAA	-23	NA	26242092	26240299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26240571_26241784
ENSMUSG00000075467.5_5	chr2	-	1491	2	NIC	ENSMUSG00000075467.5	novel	2916	3	NA	NA	20	-2171	intron_retention	FALSE	canonical	3	313	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGGGCCTGGGCTCCTGTT	NA	False	NA	-20	True	AGTAAA	-19	NA	26242092	26240303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26241487_26241784
ENSMUSG00000075467.5_6	chr2	-	1719	1	NIC	ENSMUSG00000075467.5	novel	2766	2	NA	NA	86	-2175	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCACCGGGCCTGGGCTCC	NA	False	NA	-24	True	AGTAAA	-15	NA	26242026	26240307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26240300_26242000
ENSMUSG00000075467.5_8	chr2	-	2671	2	ISM	ENSMUSG00000075467.5	ENSMUST00000028295.9	2916	3	541	2	531	-2	3prime_fragment	FALSE	canonical	3	362	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATGCGGGGCGGCCACC	NA	False	NA	NA	False	AATAAA	-16	NA	26241581	26238134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_26240571_26241346
ENSMUSG00000075470.3_0	chr15	+	6632	3	FSM	ENSMUSG00000075470.3	ENSMUST00000100309.3	6644	3	5	7	5	-7	multi-exon	FALSE	canonical	3	65	junction_2	7.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAATTGTTGAATATAT	NA	False	NA	NA	False	AATAAA	-8	NA	90108518	90117667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_90108812_90109859_90110058_90111526
ENSMUSG00000075470.3_1	chr15	+	6408	3	FSM	ENSMUSG00000075470.3	ENSMUST00000231200.2	6457	3	-19	68	19	-68	multi-exon	FALSE	canonical	2	7	junction_2	36.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTGATTCATGTCATT	NA	False	NA	NA	False	ATTAAA	-22	NA	90108532	90117606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_90108812_90109859_90110058_90111675
ENSMUSG00000075470.3_5	chr15	+	3313	1	ISM	ENSMUSG00000075470.3	ENSMUST00000100309.3	6644	3	5841	7	5803	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAATTGTTGAATATAT	NA	False	NA	NA	False	AATAAA	-8	NA	90114354	90117667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_90114400_90117700
ENSMUSG00000075486.11_0	chr14	-	835	3	NNC	ENSMUSG00000075486.11	novel	519	3	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	218.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCAGTTTTATGACGTG	NA	False	NA	NA	False	ATTAAA	-11	NA	101877882	101871208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_101871829_101874389_101874543_101877820
ENSMUSG00000075486.11_1	chr14	-	796	4	FSM	ENSMUSG00000075486.11	ENSMUST00000100339.9	1090	4	241	53	3	-53	multi-exon	FALSE	canonical	3	419	junction_3	9.8770215933527	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATGAAGTTAAGAAGGTAA	NA	False	NA	NA	False	AATAAA	-17	NA	101877881	101871254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_101871829_101874389_101874543_101877723_101877736_101877824
ENSMUSG00000075486.11_2	chr14	-	780	3	FSM	ENSMUSG00000075486.11	ENSMUST00000168587.3	519	3	11	-272	2	-58	multi-exon	FALSE	canonical	3	50	junction_2	193.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTATATGAAGTTAAGAA	NA	False	NA	NA	False	AATAAA	-12	NA	101877882	101871259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_101871829_101874389_101874543_101877824
ENSMUSG00000075486.11_4	chr14	-	1557	2	FSM	ENSMUSG00000075486.11	ENSMUST00000227868.2	4907	2	3347	3	3347	-3	multi-exon	FALSE	canonical	3	437	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTCCTGTGGTGAGCTG	NA	False	NA	-3	True	NA	NA	NA	101874537	101870419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_101871829_101874389
ENSMUSG00000075502.3_0	chr14	+	2979	1	FSM	ENSMUSG00000075502.3	ENSMUST00000100359.3	2982	1	-1	4	-1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAGATCAGAGTTCGTA	NA	False	NA	NA	False	NA	NA	NA	79689273	79692252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_79689300_79692300
ENSMUSG00000075511.10_0	chr15	-	2546	1	Genic_Genomic	ENSMUSG00000075511.10	novel	NA	NA	NA	NA	8943	193	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAGAAACTGTTGTGAAG	NA	False	NA	NA	False	AATAAA	-11	NA	83240400	83237854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_83237900_83240400
ENSMUSG00000075511.10_2	chr15	-	6071	3	NIC	ENSMUSG00000075511.10	novel	4969	3	NA	NA	-2	192	intron_retention	FALSE	canonical	3	28	junction_1	13	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAAAGAAACTGTTGTGAA	248	False	NA	NA	False	AATAAA	-10	NA	83251480	83237855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_83243152_83249229_83249715_83251190
ENSMUSG00000075511.10_3	chr15	-	6180	4	NIC	ENSMUSG00000075511.10	novel	2270	4	NA	NA	-2	192	intron_retention	FALSE	canonical	3	20	junction_1	14.2672897060218	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAAAGAAACTGTTGTGAA	248	False	NA	NA	False	AATAAA	-10	NA	83251480	83237855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_83243152_83248020_83248130_83249229_83249715_83251190
ENSMUSG00000075511.10_5	chr15	-	5874	3	NIC	ENSMUSG00000075511.10	novel	2270	4	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	13	junction_2	7.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGTCTCAAATGTTTGTC	249	False	NA	-1	True	NA	NA	NA	83251479	83238048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_83243152_83249229_83249712_83251190
ENSMUSG00000075511.10_6	chr15	-	1709	2	NIC	ENSMUSG00000075511.10	novel	2270	4	NA	NA	2	1	intron_retention	FALSE	canonical	3	7	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCCAGCTTAAGTCTCTG	247	False	NA	NA	False	AATAAA	-21	NA	83251481	83241733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_83243152_83251190
ENSMUSG00000075511.10_9	chr15	-	6170	4	FSM	ENSMUSG00000075511.10	ENSMUST00000100370.2	2270	4	-2	-3898	-2	185	multi-exon	FALSE	canonical	3	13	junction_3	6.97614984548545	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTTTATCAAAGAAACTG	248	False	NA	NA	False	AATAAA	-3	NA	83251480	83237862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_83243152_83248020_83248130_83249229_83249712_83251190
ENSMUSG00000075514.5_0	chr2	+	1570	2	FSM	ENSMUSG00000075514.5	ENSMUST00000126967.2	854	2	-368	-348	-368	348	multi-exon	FALSE	canonical	3	36	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTACTACTGTATATTTGTG	3241	False	NA	5	True	AATAAA	-16	NA	20973496	20975156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_20974195_20974284
ENSMUSG00000075528.14_0	chr11	-	1293	12	FSM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	218	5	9	-5	multi-exon	FALSE	canonical	3	448	junction_11	68.1448384565145	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACATGGTTGTATACTG	NA	False	NA	-26	True	AGTAAA	-11	NA	101308223	101297669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
ENSMUSG00000075581.6_0	chr14	-	197	1	FSM	ENSMUSG00000075581.6	ENSMUST00000100510.6	747	1	593	-43	593	43	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATAGTAACTATG	NA	False	NA	NA	False	AATAAA	-19	NA	74034137	74033940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_74033900_74034100
ENSMUSG00000075585.4_0	chr5	+	2578	1	FSM	ENSMUSG00000075585.4	ENSMUST00000100518.3	5521	1	2943	0	2943	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCGTTGCACCTCTCTCAT	6758	False	NA	NA	False	AATAAA	-16	NA	138983753	138986331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138983800_138986300
ENSMUSG00000075590.5_0	chr15	-	3218	18	FSM	ENSMUSG00000075590.5	ENSMUST00000228366.3	3192	18	-103	77	-103	0	multi-exon	FALSE	canonical	0	0	junction_3	2.12091251497882	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGCATGGTCTGACATA	NA	False	NA	0	True	AATAAA	-43	NA	75963579	75957443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75958994_75959079_75959136_75959221_75959286_75959369_75959424_75960139_75960276_75960358_75960410_75960498_75960602_75960713_75960847_75961285_75961382_75961458_75961515_75961596_75961681_75961750_75961775_75961900_75961996_75962094_75962136_75962301_75962392_75962486_75962589_75962656_75962780_75963219
ENSMUSG00000075590.5_2	chr15	-	3473	16	NIC	ENSMUSG00000075590.5	novel	3220	17	NA	NA	-97	0	intron_retention	FALSE	canonical	0	0	junction_3	2.12916258968951	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGCATGGTCTGACATA	NA	False	NA	0	True	AATAAA	-43	NA	75963573	75957443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_75958994_75959079_75959136_75959221_75959286_75959369_75959424_75960139_75960276_75960358_75960410_75960498_75960602_75960713_75960847_75961285_75961382_75961458_75961515_75961596_75961681_75961750_75961775_75961900_75961996_75962094_75962589_75962656_75962780_75963219
ENSMUSG00000075590.5_6	chr15	-	3379	17	NIC	ENSMUSG00000075590.5	novel	3192	18	NA	NA	-98	0	intron_retention	FALSE	canonical	0	0	junction_3	2.06155281280883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGCATGGTCTGACATA	NA	False	NA	0	True	AATAAA	-43	NA	75963574	75957443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_75958994_75959079_75959136_75959221_75959286_75959369_75959424_75960139_75960276_75960358_75960410_75960498_75960602_75960713_75960847_75961285_75961382_75961458_75961515_75961596_75961681_75961750_75961775_75961900_75961996_75962094_75962392_75962486_75962589_75962656_75962780_75963219
ENSMUSG00000075592.11_0	chr14	+	7352	8	FSM	ENSMUSG00000075592.11	ENSMUST00000168479.3	7511	8	151	8	132	-8	multi-exon	FALSE	canonical	3	80	junction_1	7.49965985623239	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGAGCCAATGTTTAA	NA	False	NA	7	True	AATAAA	-7	NA	56091624	56112185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_56091884_56100409_56101069_56101189_56102591_56103415_56103547_56103667_56103765_56105477_56105580_56105870_56105973_56107584
ENSMUSG00000075592.11_10	chr14	+	4647	2	ISM	ENSMUSG00000075592.11	ENSMUST00000168479.3	7511	8	14453	8	14434	-8	3prime_fragment	FALSE	canonical	3	97	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGAGCCAATGTTTAA	NA	False	NA	7	True	AATAAA	-7	NA	56105926	56112185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56105973_56107584
ENSMUSG00000075592.11_11	chr14	+	2548	1	ISM	ENSMUSG00000075592.11	ENSMUST00000168479.3	7511	8	18164	8	18145	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGAGCCAATGTTTAA	NA	False	NA	7	True	AATAAA	-7	NA	56109637	56112185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56109600_56112200
ENSMUSG00000075592.11_6	chr14	+	6926	7	ISM	ENSMUSG00000075592.11	ENSMUST00000168479.3	7511	8	9103	8	9084	-8	3prime_fragment	FALSE	canonical	3	84	junction_4	6.66874967458085	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGAGCCAATGTTTAA	NA	False	NA	7	True	AATAAA	-7	NA	56100576	56112185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56101069_56101189_56102591_56103415_56103547_56103667_56103765_56105477_56105580_56105870_56105973_56107584
ENSMUSG00000075592.11_8	chr14	+	5628	6	ISM	ENSMUSG00000075592.11	ENSMUST00000168479.3	7511	8	10522	8	10503	-8	3prime_fragment	FALSE	canonical	3	84	junction_3	6.40624695121879	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGAGCCAATGTTTAA	NA	False	NA	7	True	AATAAA	-7	NA	56101995	56112185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56102591_56103415_56103547_56103667_56103765_56105477_56105580_56105870_56105973_56107584
ENSMUSG00000075592.11_9	chr14	+	4991	5	ISM	ENSMUSG00000075592.11	ENSMUST00000168479.3	7511	8	11984	8	11965	-8	3prime_fragment	FALSE	canonical	3	84	junction_2	6.87386354243376	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGAGCCAATGTTTAA	NA	False	NA	7	True	AATAAA	-7	NA	56103457	56112185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_56103547_56103667_56103765_56105477_56105580_56105870_56105973_56107584
ENSMUSG00000075595.10_13	chr11	+	2077	5	FSM	ENSMUSG00000075595.10	ENSMUST00000091565.5	2663	5	586	0	586	0	multi-exon	FALSE	canonical	3	40	junction_1	15.52417469626	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGTGATTCTCAAAGAT	NA	False	NA	5	True	GATAAA	-15	NA	95640478	95655537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95640974_95643700_95643849_95644187_95644304_95644736_95644882_95654364
ENSMUSG00000075595.10_15	chr11	+	4438	1	ISM	ENSMUSG00000075595.10	ENSMUST00000107717.8	10433	6	55240	3	18846	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCCCACGTGTCTTCTC	NA	False	NA	6	True	AGTAAA	-16	NA	95658738	95663176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_95658700_95663200
ENSMUSG00000075595.10_16	chr11	+	3255	1	ISM	ENSMUSG00000075595.10	ENSMUST00000107717.8	10433	6	56423	3	20029	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTCCCACGTGTCTTCTC	NA	False	NA	6	True	AGTAAA	-16	NA	95659921	95663176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_95659900_95663200
ENSMUSG00000075595.10_3	chr11	+	3061	6	NIC	ENSMUSG00000075595.10	novel	6568	7	NA	NA	-116	-3	combination_of_known_junctions	FALSE	canonical	3	40	junction_2	14.0285423334001	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAAAATGTGATTCTCAAA	NA	False	NA	2	True	GATAAA	-12	NA	95603720	95655534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_95604055_95639825_95640974_95643700_95643849_95644187_95644304_95644736_95644882_95654364
ENSMUSG00000075595.10_6	chr11	+	2420	6	NIC	ENSMUSG00000075595.10	novel	3982	6	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	20.899760764181	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGTGATTCTCAAAGAT	NA	False	NA	5	True	GATAAA	-15	NA	95603824	95655537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_95604055_95639825_95640434_95643700_95643849_95644187_95644304_95644736_95644882_95654364
ENSMUSG00000075600.4_0	chr15	-	3350	12	FSM	ENSMUSG00000075600.4	ENSMUST00000100538.4	3362	12	8	4	8	-4	multi-exon	FALSE	canonical	3	58	junction_8	44.618492997359	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTTGGCCTGTCTTGAC	NA	False	NA	-5	True	AATAAA	-15	NA	75713756	75626282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75626800_75628471_75628816_75629388_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651406_75657301_75657487_75681376_75681528_75709315_75709513_75711104_75712414_75713698
ENSMUSG00000075600.4_1	chr15	-	2656	11	ISM	ENSMUSG00000075600.4	ENSMUST00000100538.4	3362	12	1987	4	1987	-4	3prime_fragment	FALSE	canonical	3	58	junction_8	46.6764394528974	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTTGGCCTGTCTTGAC	NA	False	NA	-5	True	AATAAA	-15	NA	75711777	75626282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_75626800_75628471_75628816_75629388_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651406_75657301_75657487_75681376_75681528_75709315_75709513_75711104
ENSMUSG00000075600.4_12	chr15	-	2055	11	NIC	ENSMUSG00000075600.4	novel	3362	12	NA	NA	-6	-4	combination_of_known_splicesites	FALSE	canonical	2	3	junction_10	63.9518568925094	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTTGGCCTGTCTTGAC	NA	False	NA	-5	True	AATAAA	-15	NA	75713770	75626282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_75626800_75628471_75628816_75629388_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651406_75657301_75657487_75681376_75681528_75709315_75709513_75713698
ENSMUSG00000075602.11_0	chr15	-	853	4	FSM	ENSMUSG00000075602.11	ENSMUST00000187994.7	955	4	102	0	-1	0	multi-exon	FALSE	canonical	3	72	junction_1	7.54247233265651	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGTTCTCCATTTTTC	9610	False	NA	-4	True	AATAAA	-15	NA	74869778	74866726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_74867329_74868300_74868418_74869383_74869467_74869727
ENSMUSG00000075602.11_1	chr15	-	886	4	FSM	ENSMUSG00000075602.11	ENSMUST00000187171.2	853	4	40	-73	-19	0	multi-exon	FALSE	canonical	2	2	junction_3	37.3452361977624	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGTTCTCCATTTTTC	9592	False	NA	-4	True	AATAAA	-15	NA	74869796	74866726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_74867329_74868300_74868418_74869383_74869482_74869727
ENSMUSG00000075602.11_2	chr15	-	308	1	ISM	ENSMUSG00000075602.11	ENSMUST00000189068.7	878	4	2722	1	2449	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGTTCTCCATTTTTC	9624	False	NA	-4	True	AATAAA	-15	NA	74867034	74866726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_74866700_74867000
ENSMUSG00000075609.4_0	chr15	-	1534	1	FSM	ENSMUSG00000075609.4	ENSMUST00000100555.4	1278	1	-32	-224	-32	224	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	73953392	73951858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_73951900_73953400
ENSMUSG00000075700.11_0	chr3	+	3116	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	36	5	-26	-5	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAACCCTGCTTTGTGA	NA	False	NA	10	True	AATAAA	-13	NA	58484092	58500549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
ENSMUSG00000075700.11_5	chr3	+	1823	1	ISM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	14670	5	14608	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAACCCTGCTTTGTGA	NA	False	NA	10	True	AATAAA	-13	NA	58498726	58500549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_58498700_58500500
ENSMUSG00000075701.11_0	chr7	+	1168	6	FSM	ENSMUSG00000075701.11	ENSMUST00000101801.8	1191	6	22	1	-6	1	multi-exon	FALSE	canonical	3	410	junction_5	18.3804243694209	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACAGTCTCTGGTTTTTCT	NA	False	NA	6	True	AGTAAA	-15	NA	65729418	65739152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737020_65738514
ENSMUSG00000075701.11_8	chr7	+	1165	6	FSM	ENSMUSG00000075701.11	ENSMUST00000206575.2	1157	6	-9	1	-8	-1	multi-exon	FALSE	canonical	3	53	junction_5	154.225808475754	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACAGTCTCTGGTTTTT	NA	False	NA	4	True	AGTAAA	-13	NA	65729416	65739150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737017_65738514
ENSMUSG00000075702.11_0	chr11	+	705	5	FSM	ENSMUSG00000075702.11	ENSMUST00000094469.6	707	5	1	1	1	-1	multi-exon	FALSE	canonical	3	143	junction_4	6.04152298679729	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCGGAGTCTCTTCTTATT	NA	False	NA	21	True	ACTAAA	-13	NA	3464867	3467350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_3465074_3466260_3466297_3466485_3466521_3466841_3466921_3467001
ENSMUSG00000075703.17_0	chr5	+	3297	10	FSM	ENSMUSG00000075703.17	ENSMUST00000145167.9	6803	10	52	3454	-2	0	multi-exon	FALSE	canonical	3	44	junction_3	10.5725010181025	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTGTTGTCACTGTTGA	NA	False	NA	3	True	AGTAAA	-14	NA	30437630	30473971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30437814_30452460_30452530_30453409_30453519_30457707_30457783_30461075_30461339_30462709_30462819_30468068_30468118_30469272_30469454_30470335_30470522_30471898
ENSMUSG00000075703.17_16	chr5	+	5774	3	ISM	ENSMUSG00000075703.17	ENSMUST00000151795.3	1028	4	844	-5173	844	-7	3prime_fragment	FALSE	canonical	3	49	junction_2	7.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTTTTTAATTGTTTTC	3317	False	NA	NA	False	AATAAA	-16	NA	30469385	30477418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_30469454_30470335_30470522_30471898
ENSMUSG00000075703.17_6	chr5	+	2137	2	ISM	ENSMUSG00000075703.17	ENSMUST00000151795.3	1028	4	1842	-1652	1842	-74	3prime_fragment	FALSE	canonical	3	49	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAAATGCTTTGTGCC	4315	False	NA	-71	True	NA	NA	NA	30470383	30473897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_30470522_30471898
ENSMUSG00000075703.17_7	chr5	+	5347	1	ISM	ENSMUSG00000075703.17	ENSMUST00000145167.9	6803	10	34493	7	3530	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTTTTTAATTGTTTTC	6003	False	NA	NA	False	AATAAA	-16	NA	30472071	30477418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_30472100_30477400
ENSMUSG00000075703.17_9	chr5	+	3199	10	NIC	ENSMUSG00000075703.17	novel	6803	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	19.440952067323	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTGTTGTCACTGTTGA	NA	False	NA	3	True	AGTAAA	-14	NA	30437669	30473971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_30437814_30452460_30452530_30453409_30453519_30457707_30457783_30461075_30461339_30462709_30462760_30468068_30468118_30469272_30469454_30470335_30470522_30471898
ENSMUSG00000075704.18_0	chr16	+	1879	18	FSM	ENSMUSG00000075704.18	ENSMUST00000115606.9	1905	18	17	9	-4	-3	multi-exon	FALSE	canonical	3	67	junction_11	21.0007414599702	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGCATGTCTGCGTGT	NA	False	NA	NA	False	AATAAA	-12	NA	18245183	18297814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
ENSMUSG00000075704.18_12	chr16	+	2625	17	NIC	ENSMUSG00000075704.18	novel	1905	18	NA	NA	-2	-3	intron_retention	FALSE	canonical	3	67	junction_10	21.2146765235768	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGCATGTCTGCGTGT	NA	False	NA	NA	False	AATAAA	-12	NA	18245185	18297814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
ENSMUSG00000075704.18_3	chr16	+	1243	11	FSM	ENSMUSG00000075704.18	ENSMUST00000115604.8	1235	11	-14	6	7	-6	multi-exon	FALSE	canonical	3	88	junction_9	21.8229237271269	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGATTTGTTGGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	18245173	18275212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773
ENSMUSG00000075704.18_6	chr16	+	1779	17	FSM	ENSMUSG00000075704.18	ENSMUST00000206606.3	1809	17	24	6	0	-3	multi-exon	FALSE	canonical	2	5	junction_13	32.1674694955945	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGCATGTCTGCGTGT	NA	False	NA	NA	False	AATAAA	-12	NA	18245190	18297814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18293431_18293504_18294271_18294370_18296400_18296608_18297607
ENSMUSG00000075704.18_8	chr16	+	551	4	FSM	ENSMUSG00000075704.18	ENSMUST00000131303.8	532	4	-22	3	-1	-1	multi-exon	FALSE	canonical	3	135	junction_1	7.03957069398096	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTGCTCCCTGACTGTC	NA	False	NA	9	True	NA	NA	NA	18245189	18256559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251
ENSMUSG00000075705.14_0	chr17	+	868	5	FSM	ENSMUSG00000075705.14	ENSMUST00000115262.9	886	5	11	7	11	0	multi-exon	FALSE	canonical	3	96	junction_4	30.3685692781204	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGTTTCCGTGTTTGTTG	NA	False	NA	12	True	AATAAA	-12	NA	24955626	24961745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879_24960912_24961283
ENSMUSG00000075705.14_1	chr17	+	1240	4	FSM	ENSMUSG00000075705.14	ENSMUST00000101800.7	1211	4	-29	0	11	0	multi-exon	FALSE	canonical	3	148	junction_3	11.8602979164381	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGTTTCCGTGTTTGTTG	NA	False	NA	12	True	AATAAA	-12	NA	24955626	24961745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879
ENSMUSG00000075705.14_3	chr17	+	322	1	ISM	ENSMUSG00000075705.14	ENSMUST00000115262.9	886	5	5808	7	5768	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGTTTCCGTGTTTGTTG	NA	False	NA	12	True	AATAAA	-12	NA	24961423	24961745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_24961400_24961700
ENSMUSG00000075706.12_6	chr10	+	784	7	FSM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	174	1	174	-1	multi-exon	FALSE	canonical	3	7423	junction_5	743.006878987148	2159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTGTGTCTTTGGGT	829	False	NA	3	True	AATAAA	-13	NA	79889495	79892272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUSG00000075706.12_8	chr10	+	731	6	FSM	ENSMUSG00000075706.12	ENSMUST00000183037.3	735	6	48	-44	48	-1	multi-exon	FALSE	canonical	3	7423	junction_4	813.086120899871	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTGTGTCTTTGGGT	1680	False	NA	3	True	AATAAA	-13	NA	79890346	79892272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUSG00000075707.7_0	chr12	+	1874	1	FSM	ENSMUSG00000075707.7	ENSMUST00000173014.3	2030	1	149	7	-43	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGATTGCCTTTGGTCCG	NA	False	NA	20	True	AATAAA	-17	NA	110245650	110247524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110245600_110247500
ENSMUSG00000076430.2_0	chr13	-	1175	1	FSM	ENSMUSG00000076430.2	ENSMUST00000102943.2	1187	1	15	-3	15	3	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAACAATTATTGTATTAT	NA	False	NA	NA	False	AATAAA	-18	NA	31131727	31130552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_31130600_31131700
ENSMUSG00000076431.5_0	chr13	-	4769	1	FSM	ENSMUSG00000076431.5	ENSMUST00000067230.6	4795	1	17	9	17	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTAAATCTTGACTTTT	NA	False	NA	-9	True	AATAAA	-15	NA	29137679	29132910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_29132900_29137700
ENSMUSG00000076432.14_0	chr12	-	1791	5	FSM	ENSMUSG00000076432.14	ENSMUST00000103002.8	2110	5	303	16	-3	-13	multi-exon	FALSE	canonical	3	3292	junction_3	152.582764426393	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATTTTATAAAACCATTTA	NA	False	NA	NA	False	AATAAA	-4	NA	21467134	21440345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798
ENSMUSG00000076432.14_1	chr12	-	1817	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	103	277	54	-16	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	3019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACATTTTATAAAACCAT	NA	False	NA	NA	False	AATAAA	-1	NA	21467535	21440348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ENSMUSG00000076435.4_2	chr11	-	3125	16	FSM	ENSMUSG00000076435.4	ENSMUST00000103164.4	3154	16	26	3	26	-3	multi-exon	FALSE	canonical	3	47	junction_6	8.37615663654877	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCTGATTGGACTGTAA	7311	False	NA	-7	True	AATAAA	-16	NA	94492671	94447930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_94449184_94449465_94449535_94449690_94449802_94450288_94450431_94452065_94452218_94453636_94453745_94460135_94460213_94460766_94460859_94461128_94461287_94461439_94461536_94462096_94462263_94462387_94462507_94463051_94463106_94463347_94463477_94463858_94464055_94492468
ENSMUSG00000076437.12_0	chr2	-	651	4	FSM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	86	10	-8	-4	multi-exon	FALSE	canonical	3	1785	junction_1	271.099407761966	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATAAGGAGCAAGTTTAA	382	False	NA	-18	True	AATAAA	-15	NA	84501028	84499568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84499742_84500330_84500461_84500588_84500735_84500826
ENSMUSG00000076437.12_1	chr2	-	626	4	FSM	ENSMUSG00000076437.12	ENSMUST00000102647.11	654	4	24	4	-8	-4	multi-exon	FALSE	canonical	3	329	junction_1	946.216677088287	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATAAGGAGCAAGTTTAA	382	False	NA	-18	True	AATAAA	-15	NA	84501028	84499568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84499742_84500355_84500461_84500588_84500735_84500826
ENSMUSG00000076437.12_2	chr2	-	679	3	ISM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	150	10	34	-4	intron_retention	FALSE	canonical	3	1785	junction_1	215.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATAAGGAGCAAGTTTAA	446	False	NA	-18	True	AATAAA	-15	NA	84500964	84499568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84499742_84500330_84500461_84500588
ENSMUSG00000076437.12_9	chr2	-	773	3	FSM	ENSMUSG00000076437.12	ENSMUST00000102646.4	783	3	13	-3	-8	3	multi-exon	FALSE	canonical	3	2216	junction_1	111	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTAGTTAAGGTTTTT	382	False	NA	NA	False	AATAAA	-18	NA	84501028	84500035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84500461_84500588_84500735_84500826
ENSMUSG00000076441.10_1	chr2	+	1596	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	94	6	94	-6	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	2714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTATTTGTCTCTGCGTG	NA	False	NA	21	True	ATTAAA	-16	NA	31360312	31410678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
ENSMUSG00000077391.3_0	chr19	-	246	1	FSM	ENSMUSG00000077391.3	ENSMUST00000104203.3	146	1	4	-104	4	104	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTTCATCAAGACTTCAA	4910	False	NA	-5	True	NA	NA	NA	44102559	44102313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_44102300_44102600
ENSMUSG00000077450.14_0	chr17	-	1781	5	FSM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	206	4122	-18	144	multi-exon	FALSE	canonical	3	562	junction_1	25.4411084664171	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCTACCACTCAGCTT	NA	False	NA	-15	True	ACTAAA	-22	NA	33979298	33965579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
ENSMUSG00000077450.14_2	chr17	-	1667	4	ISM	ENSMUSG00000077450.14	ENSMUST00000173860.8	1544	5	10343	-146	-118	146	3prime_fragment	FALSE	canonical	3	562	junction_1	29.3295452099452	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTACCACTCAGCTTCT	9919	False	NA	-13	True	ACTAAA	-24	NA	33968937	33965577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755
ENSMUSG00000078087.6_0	chr7	+	277	1	FSM	ENSMUSG00000078087.6	ENSMUST00000183090.2	399	1	136	-14	136	14	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGCACG	NA	False	NA	NA	False	AATAAA	-14	NA	55663899	55664176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_55663900_55664200
ENSMUSG00000078117.3_0	chr9	+	5171	1	FSM	ENSMUSG00000078117.3	ENSMUST00000104915.3	3983	1	-1191	3	-1191	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATAAAATATGTGTCT	NA	False	NA	NA	False	AATAAA	-9	NA	8970600	8975771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_8970600_8975800
ENSMUSG00000078126.5_0	chr14	+	519	1	FSM	ENSMUSG00000078126.5	ENSMUST00000104925.5	468	1	-5	-46	-5	46	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	2269	False	NA	NA	False	AATATA	-14	NA	33892606	33893125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_33892600_33893100
ENSMUSG00000078139.4_0	chr13	+	1908	1	FSM	ENSMUSG00000078139.4	ENSMUST00000104942.2	1924	1	2	14	2	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	TTTAAA	-13	NA	21679394	21681302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_21679400_21681300
ENSMUSG00000078153.4_0	chr11	-	782	1	FSM	ENSMUSG00000078153.4	ENSMUST00000104958.2	837	1	43	12	43	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTATGTATATAAAAAAAA	1578	False	NA	NA	False	AATAAA	-10	NA	48836974	48836192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_48836200_48837000
ENSMUSG00000078154.4_0	chr11	-	1128	1	FSM	ENSMUSG00000078154.4	ENSMUST00000104959.2	1310	1	169	13	169	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGAG	NA	False	NA	NA	False	AATAAA	-14	NA	48717313	48716185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_48716200_48717300
ENSMUSG00000078173.4_0	chr3	-	1027	1	FSM	ENSMUSG00000078173.4	ENSMUST00000057431.6	1806	1	-205	984	-205	-984	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGGGAATGAGGGCATGT	NA	False	NA	-3	True	AATAAA	-32	NA	89310305	89309278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_89309300_89310300
ENSMUSG00000078180.5_0	chr13	-	114	1	FSM	ENSMUSG00000078180.5	ENSMUST00000078729.9	472	1	398	-40	398	40	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACCATAAAAAAAAAAAGGTA	NA	False	NA	NA	False	AATATA	-11	NA	120765803	120765689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_120765700_120765800
ENSMUSG00000078185.4_0	chr1	-	6926	2	FSM	ENSMUSG00000078185.4	ENSMUST00000104984.4	6905	2	-26	5	-26	-5	multi-exon	FALSE	canonical	3	18	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGGTGTGCTCAATTG	NA	False	NA	-2	True	AATAAA	-12	NA	175520222	175509807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_175516247_175519735
ENSMUSG00000078185.4_1	chr1	-	3877	1	ISM	ENSMUSG00000078185.4	ENSMUST00000104984.4	6905	2	6513	4	2236	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGGTGTGCTCAATTGA	NA	False	NA	-1	True	AATAAA	-13	NA	175513683	175509806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_175509800_175513700
ENSMUSG00000078193.3_0	chr1	+	426	1	FSM	ENSMUSG00000078193.3	ENSMUST00000102782.4	445	1	19	0	19	0	mono-exon	FALSE	NA	NA	NA	NA	NA	559	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	156193628	156194054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_156193600_156194100
ENSMUSG00000078201.6_0	chr2	+	839	1	FSM	ENSMUSG00000078201.6	ENSMUST00000104998.5	854	1	13	2	13	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCATGCTCTGAATTGCC	NA	False	NA	4	True	ATTAAA	-14	NA	25145463	25146302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25145500_25146300
ENSMUSG00000078202.4_0	chr2	+	2567	1	FSM	ENSMUSG00000078202.4	ENSMUST00000104999.4	2582	1	1	14	1	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATTAAAAAAAAATACTGG	7952	False	NA	NA	False	AATAAA	-19	NA	25070770	25073337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_25070800_25073300
ENSMUSG00000078206.2_0	chrX	-	844	1	FSM	ENSMUSG00000078206.2	ENSMUST00000105004.2	856	1	0	12	0	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAAAATTGAAGTATCAAG	NA	False	NA	NA	False	AATAAA	-19	NA	8852994	8852150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_8852200_8853000
ENSMUSG00000078234.7_0	chr4	-	3139	2	Genic_Genomic	ENSMUSG00000078234.7	novel	7807	1	NA	NA	4980	750	multi-exon	FALSE	canonical	2	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TATCTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	139690357	139686780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_-_139688684_139689121
ENSMUSG00000078234.7_1	chr4	-	5431	1	FSM	ENSMUSG00000078234.7	ENSMUST00000105031.4	7807	1	430	1946	430	-1946	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGAGGCCTCCTCCAAAAC	NA	False	NA	NA	False	AATAAA	-28	NA	139694907	139689476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_139689500_139694900
ENSMUSG00000078235.4_0	chr4	-	2351	1	FSM	ENSMUSG00000078235.4	ENSMUST00000105032.4	2437	1	77	9	77	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCTGTCACCCCTCCTGT	NA	False	NA	NA	False	AATAAA	-17	NA	138123762	138121411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_138121400_138123800
ENSMUSG00000078240.3_0	chr18	+	2935	1	FSM	ENSMUSG00000078240.3	ENSMUST00000105038.3	1656	1	-1279	0	-1279	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3472	False	NA	NA	False	AATAAA	-17	NA	34868132	34871067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_34868100_34871100
ENSMUSG00000078249.6_0	chr11	+	1562	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-31	multi-exon	FALSE	canonical	3	1960	junction_1	0	1609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAGTCAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-20	NA	120653619	120655214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_120653817_120653849
ENSMUSG00000078249.6_1	chr11	+	1595	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	0	31	0	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	3002	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAGTCAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-20	NA	120653619	120655214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_120653600_120655200
ENSMUSG00000078300.4_0	chr15	+	1246	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-64	-180	-64	180	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	98	False	NA	NA	False	AATAAA	-14	NA	12574910	12576156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_12574900_12576200
ENSMUSG00000078302.6_0	chr13	+	2445	1	FSM	ENSMUSG00000078302.6	ENSMUST00000105098.6	5064	1	2	2617	2	-2617	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAAGCCACCTAAGTA	NA	False	NA	NA	False	AATAAA	-14	NA	98490751	98493196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_98490800_98493200
ENSMUSG00000078317.7_0	chrX	+	1497	1	FSM	ENSMUSG00000078317.7	ENSMUST00000105111.4	2505	1	6	1002	6	-1002	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGGCGTATTGATTTC	NA	False	NA	7	True	NA	NA	NA	72271902	72273399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_72271900_72273400
ENSMUSG00000078348.5_0	chr10	+	703	1	FSM	ENSMUSG00000078348.5	ENSMUST00000105139.5	3841	1	3137	1	3137	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	588	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTTGGTATGGATTGCT	NA	False	NA	22	True	TATAAA	-17	NA	12884223	12884926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_12884200_12884900
ENSMUSG00000078350.12_1	chr4	-	520	4	FSM	ENSMUSG00000078350.12	ENSMUST00000146054.8	707	4	211	-24	-3	23	multi-exon	FALSE	canonical	3	33	junction_2	2.35702260395516	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGGCCATTTGTGCAGA	NA	False	NA	1	True	AATAAA	-40	NA	154110396	154107743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_154107911_154108144_154108349_154109960_154110079_154110365
ENSMUSG00000078350.12_2	chr4	-	3024	5	NNC	ENSMUSG00000078350.12	novel	3373	5	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.1492574075431	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGAATGCCTGCGTTCAA	NA	False	NA	NA	False	AATAAA	-9	NA	154110415	154105049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_154106246_154106454_154107911_154108144_154108349_154109960_154110079_154110365
ENSMUSG00000078377.6_0	chr12	+	695	1	FSM	ENSMUSG00000078377.6	ENSMUST00000105169.6	614	1	-36	-45	-36	45	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGTCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	12073009	12073704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_12073000_12073700
ENSMUSG00000078427.4_13	chr10	+	935	12	NNC	ENSMUSG00000078427.4	novel	918	11	NA	NA	11	-11	at_least_one_novel_splicesite	FALSE	canonical	3	390	junction_1	1520.20222121546	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAGGAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	128657787	128713475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078427.4_6	chr10	+	882	11	FSM	ENSMUSG00000078427.4	ENSMUST00000105230.4	918	11	25	11	11	-11	multi-exon	FALSE	canonical	3	1529	junction_8	1099.33345259753	1245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAGGAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	128657787	128713475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078427.4_7	chr10	+	878	11	NIC	ENSMUSG00000078427.4	novel	953	12	NA	NA	-12	-11	combination_of_known_junctions	FALSE	canonical	3	1288	junction_2	1269.59119798461	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAGGAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	128657788	128713475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_128657841_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078429.10_3	chr10	+	4429	9	NNC	ENSMUSG00000078429.10	novel	4817	8	NA	NA	-70	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	131.579764306674	315	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAGGACTGGGAGCTGCT	NA	False	NA	12	True	AATAAA	-18	NA	126814827	126835837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229_126835202_126835346
ENSMUSG00000078429.10_39	chr10	+	2610	1	FSM	ENSMUSG00000072837.3	ENSMUST00000102105.3	121	1	-1084	-1405	-1084	1405	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGCAGGACTGGGAGCT	NA	False	NA	9	True	AATAAA	-15	NA	126833224	126835834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_126833200_126835800
ENSMUSG00000078429.10_4	chr10	+	4433	9	NNC	ENSMUSG00000078429.10	novel	4817	8	NA	NA	-70	-1	at_least_one_novel_splicesite	TRUE	canonical	3	168	junction_8	83.7734109070414	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAGGACTGGGAGCTGCT	NA	False	NA	12	True	AATAAA	-18	NA	126814827	126835837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229_126835253_126835393
ENSMUSG00000078429.10_40	chr10	+	2724	2	NNC	ENSMUSG00000078429.10	novel	4817	8	NA	NA	1488	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	74	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGACTGGGAGCTGCTT	NA	False	NA	13	True	AATAAA	-19	NA	126832969	126835838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_126835202_126835346
ENSMUSG00000078429.10_5	chr10	+	4571	8	FSM	ENSMUSG00000078429.10	ENSMUST00000105256.10	4817	8	242	4	-70	-4	multi-exon	FALSE	canonical	3	267	junction_2	56.6705480863575	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGCAGGACTGGGAGCT	NA	False	NA	9	True	AATAAA	-15	NA	126814827	126835834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229
ENSMUSG00000078435.6_2	chr10	+	465	4	FSM	ENSMUSG00000078435.6	ENSMUST00000201286.4	2634	4	-9	2178	-9	-1124	multi-exon	FALSE	canonical	1	5	junction_2	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAACATACTAAAGAA	NA	False	NA	NA	False	NA	NA	NA	81963837	81986721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81963933_81974086_81974214_81986050_81986112_81986539
ENSMUSG00000078440.11_0	chr10	+	539	1	ISM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	3382	4	2189	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTGCTGGCTCCTGCTG	NA	False	NA	11	True	AATAAA	-15	NA	81223643	81224182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81223600_81224200
ENSMUSG00000078440.11_1	chr10	+	1212	4	ISM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	1370	2	177	-2	3prime_fragment	FALSE	canonical	3	742	junction_2	37.1513421321791	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGCTGGCTCCTGCTGTG	NA	False	NA	13	True	AATAAA	-17	NA	81221631	81224184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81221882_81222246_81222324_81223073_81223315_81223540
ENSMUSG00000078440.11_2	chr10	+	1438	5	NIC	ENSMUSG00000078440.11	novel	1444	5	NA	NA	11	-4	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	318.019653480724	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTGCTGGCTCCTGCTG	NA	False	NA	11	True	AATAAA	-15	NA	81220311	81224182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_81220461_81221552_81221882_81222246_81222324_81223073_81223315_81223540
ENSMUSG00000078440.11_4	chr10	+	2809	3	FSM	ENSMUSG00000078440.11	ENSMUST00000121047.2	946	3	-1196	-667	-3	-4	multi-exon	FALSE	canonical	3	742	junction_2	23	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTGCTGGCTCCTGCTG	NA	False	NA	11	True	AATAAA	-15	NA	81220258	81224182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81221882_81222246_81222324_81223073
ENSMUSG00000078440.11_5	chr10	+	927	3	ISM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	2017	5	824	-5	3prime_fragment	FALSE	canonical	3	742	junction_1	45.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAAGTGCTGGCTCCTGCT	NA	False	NA	10	True	AATAAA	-14	NA	81222278	81224181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81222324_81223073_81223315_81223540
ENSMUSG00000078452.11_0	chr10	+	1278	7	Fusion	ENSMUSG00000053219.16_ENSMUSG00000078452.11	novel	1274	7	NA	NA	-9	-2	multi-exon	FALSE	canonical	3	14	junction_5	20.6801031589948	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTATGTGCTCCAGAAGT	NA	False	NA	NA	False	AATAAA	-13	NA	22049410	22250036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr10_+_22049436_22049774_22049866_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ENSMUSG00000078452.11_1	chr10	+	1115	6	NIC	ENSMUSG00000053219.16	novel	1218	6	NA	NA	-44	-141	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	29.7281011838967	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAAAGGAAAACACATTT	NA	False	NA	NA	False	AATAAA	-17	NA	22049773	22249897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_22049866_22050191_22050310_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ENSMUSG00000078452.11_3	chr10	+	1278	7	NNC	ENSMUSG00000078452.11	novel	1271	7	NA	NA	-2	-17	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	16.5672032106274	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTGGTAAATTTAAGGT	NA	False	NA	NA	False	AATACA	-13	NA	22237790	22250021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_22237831_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ENSMUSG00000078452.11_4	chr10	+	1135	7	FSM	ENSMUSG00000078452.11	ENSMUST00000095795.5	1271	7	-9	145	-9	-145	multi-exon	FALSE	canonical	1	2	junction_1	20.4402924527893	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAATCAAAAAGGAAAACAC	NA	False	NA	NA	False	AATAAA	-13	NA	22237783	22249893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_22237809_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ENSMUSG00000078453.4_0	chr10	-	739	3	FSM	ENSMUSG00000078453.4	ENSMUST00000020002.9	846	3	104	3	34	1	multi-exon	FALSE	canonical	3	143	junction_1	12	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTCCTGGTGGCTGTGT	NA	False	NA	-7	True	AATAAA	-19	NA	17898932	17887010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_17887565_17894586_17894654_17898814
ENSMUSG00000078453.4_1	chr10	-	724	3	FSM	ENSMUSG00000078453.4	ENSMUST00000220433.2	275	3	-7	-442	-7	1	multi-exon	FALSE	canonical	3	8	junction_2	67.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTCCTGGTGGCTGTGT	NA	False	NA	-7	True	AATAAA	-19	NA	17898845	17887010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_17887565_17894586_17894654_17898742
ENSMUSG00000078453.4_2	chr10	-	407	1	ISM	ENSMUSG00000078453.4	ENSMUST00000020002.9	846	3	11619	3	1686	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTCCTGGTGGCTGTGT	NA	False	NA	-7	True	AATAAA	-19	NA	17887417	17887010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_17887000_17887400
ENSMUSG00000078453.4_3	chr10	-	681	3	FSM	ENSMUSG00000078453.4	ENSMUST00000218994.2	425	3	5	-261	5	1	multi-exon	FALSE	canonical	1	1	junction_2	71	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTCCTGGTGGCTGTGT	NA	False	NA	-7	True	AATAAA	-19	NA	17898621	17887010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_17887565_17894586_17894654_17898561
ENSMUSG00000078480.4_0	chr4	-	879	1	FSM	ENSMUSG00000078480.4	ENSMUST00000121413.2	636	1	-56	-187	-56	187	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGTGTAAAAAAAAAAAAAAA	4745	False	NA	NA	False	AATAAA	-15	NA	88518103	88517224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_88517200_88518100
ENSMUSG00000078485.5_0	chr4	-	4558	15	NIC	ENSMUSG00000078485.5	novel	2004	16	NA	NA	-13	0	intron_retention	FALSE	canonical	3	7	junction_2	3.51962428421569	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGGTCAAGGTTGTCTCT	NA	False	NA	-6	True	ATTAAA	-20	NA	156313012	156306118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_156306340_156306424_156306474_156306707_156306936_156307096_156307238_156307397_156307539_156307754_156307896_156308022_156308172_156308313_156308390_156308994_156309076_156309181_156309296_156309373_156309499_156309651_156309725_156309804_156309886_156309982_156312774_156312865
ENSMUSG00000078485.5_10	chr4	-	2789	13	ISM	ENSMUSG00000078485.5	ENSMUST00000217885.2	1982	16	3055	-1129	3028	919	3prime_fragment	FALSE	canonical	3	7	junction_2	3.72957400010004	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCATATAAGTACATTTCA	NA	False	NA	NA	False	NA	NA	NA	156309929	156304993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_156306340_156306424_156306474_156306707_156306936_156307096_156307238_156307397_156307539_156307754_156307896_156308022_156308172_156308313_156308390_156308994_156309076_156309181_156309296_156309373_156309499_156309651_156309725_156309804
ENSMUSG00000078485.5_3	chr4	-	1990	16	FSM	ENSMUSG00000078485.5	ENSMUST00000217885.2	1982	16	2	-10	2	-4	multi-exon	FALSE	canonical	2	4	junction_14	4.43721634461166	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGTTGTCTCTAGACTC	NA	False	NA	0	True	ATTAAA	-26	NA	156312982	156306112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_156306340_156306424_156306474_156306707_156306936_156307096_156307238_156307397_156307539_156307754_156307896_156308022_156308172_156308313_156308390_156308994_156309076_156309181_156309296_156309373_156309499_156309651_156309725_156309804_156309886_156309982_156310130_156312673_156312774_156312865
ENSMUSG00000078485.5_9	chr4	-	354	1	ISM	ENSMUSG00000078485.5	ENSMUST00000218699.2	3196	15	22	7690	22	-7676	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCCATCTTTGGCCCCC	NA	False	NA	-7	True	AATAAA	-33	NA	156314152	156313798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_156313800_156314200
ENSMUSG00000078490.11_0	chr4	+	2369	5	FSM	ENSMUSG00000078490.11	ENSMUST00000123952.9	2365	5	-6	2	-6	-2	multi-exon	FALSE	canonical	2	6	junction_2	1.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGATTCTGGTCTGTTGC	2326	False	NA	NA	False	NA	NA	NA	155493708	155506447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_155494028_155500136_155500223_155503076_155503153_155503303_155503448_155504703
ENSMUSG00000078495.11_27	chr4	-	2560	4	NNC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	9	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	106.377733676847	66	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	8382	False	NA	NA	False	NA	NA	NA	147860281	147838435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_147840693_147842158_147842286_147845677_147845727_147860154
ENSMUSG00000078495.11_30	chr4	-	1882	1	ISM	ENSMUSG00000078495.11	ENSMUST00000105734.10	2729	6	53928	5	19973	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	8074	False	NA	NA	False	NA	NA	NA	147840317	147838435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_147838400_147840300
ENSMUSG00000078497.10_21	chr4	+	3408	7	Fusion	ENSMUSG00000078497.10_ENSMUSG00000087207.9	novel	585	4	NA	NA	-3	2149	multi-exon	TRUE	non_canonical	0	0	junction_1	214.114001306677	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	4107	False	NA	NA	False	AATAAA	-13	NA	147314737	147477610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_147314893_147393100_147393194_147400358_147400432_147469667_147469759_147472778_147472906_147474656_147476156_147476240
ENSMUSG00000078497.10_22	chr4	+	3424	5	Fusion	ENSMUSG00000078497.10_ENSMUSG00000087207.9	novel	585	4	NA	NA	-12	2149	multi-exon	FALSE	canonical	3	50	junction_2	203.869290232737	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	4098	False	NA	NA	False	AATAAA	-13	NA	147314728	147477610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_147314893_147447267_147447362_147469673_147469759_147472778_147472906_147474656
ENSMUSG00000078497.10_23	chr4	+	3430	5	Fusion	ENSMUSG00000078497.10_ENSMUSG00000087207.9	novel	585	4	NA	NA	-21	2149	multi-exon	FALSE	canonical	3	109	junction_1	184.690788887806	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	4089	False	NA	NA	False	AATAAA	-13	NA	147314719	147477610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_147314893_147447267_147447362_147469676_147469759_147472778_147472906_147474656
ENSMUSG00000078497.10_77	chr4	+	3414	5	NNC	ENSMUSG00000078497.10	novel	1250	5	NA	NA	-4	2149	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	221.659085083378	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	2365	False	NA	NA	False	AATAAA	-13	NA	147445755	147477610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_147445910_147447267_147447362_147469673_147469759_147472778_147472906_147474656
ENSMUSG00000078497.10_85	chr4	+	3424	5	FSM	ENSMUSG00000078497.10	ENSMUST00000154154.2	1250	5	-25	-2149	-17	2149	multi-exon	FALSE	canonical	3	18	junction_1	206.815739246316	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	2352	False	NA	NA	False	AATAAA	-13	NA	147445742	147477610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_147445910_147447267_147447362_147469676_147469759_147472778_147472906_147474656
ENSMUSG00000078497.10_93	chr4	+	3415	5	NNC	ENSMUSG00000078497.10	novel	1250	5	NA	NA	2	2149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	225.827367694883	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	2371	False	NA	NA	False	AATAAA	-13	NA	147445761	147477610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_147445917_147447267_147447362_147469673_147469759_147472778_147472906_147474656
ENSMUSG00000078498.6_105	chr4	+	2829	4	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4879	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	75.7935793234933	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147395009	147418185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724
ENSMUSG00000078498.6_120	chr4	+	5209	2	ISM	ENSMUSG00000078498.6	ENSMUST00000148762.4	2800	4	23358	-2665	-3375	2665	3prime_fragment	FALSE	canonical	3	186	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGTTATATTTCTCTT	NA	False	NA	-46	True	NA	NA	NA	147413488	147420856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_147413566_147415724
ENSMUSG00000078498.6_92	chr4	+	5493	4	FSM	ENSMUSG00000078498.6	ENSMUST00000148762.4	2800	4	-46	-2647	-46	2647	multi-exon	FALSE	canonical	2	12	junction_1	71.5976411777806	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGCTTGTTGGTTGCAAA	NA	False	NA	-64	True	NA	NA	NA	147390084	147420838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_147390233_147409230_147409335_147413438_147413566_147415724
ENSMUSG00000078498.6_93	chr4	+	6450	3	NIC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-57	3720	combination_of_known_splicesites	FALSE	canonical	2	12	junction_1	22.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCTGAGTAGTACTTCAT	NA	False	NA	NA	False	NA	NA	NA	147390073	147421911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_147390233_147409230_147409335_147415724
ENSMUSG00000078502.11_43	chr4	+	2503	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-9	-5	multi-exon	FALSE	canonical	0	0	junction_4	20.6533290294809	58	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	5010	False	NA	NA	False	NA	NA	NA	145241444	145351906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_145241589_145343687_145343746_145347127_145347255_145348721_145349286_145349370_145350039_145350964
ENSMUSG00000078502.11_44	chr4	+	2546	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-3	-5	multi-exon	TRUE	canonical	0	0	junction_4	21.5580611373101	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	5016	False	NA	NA	False	NA	NA	NA	145241450	145351906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_145241589_145343640_145343746_145347127_145347255_145348721_145349454_145350462
ENSMUSG00000078502.11_7	chr4	+	2515	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-7	-5	multi-exon	TRUE	canonical	0	0	junction_4	20.8461027532726	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	905	False	NA	NA	False	NA	NA	NA	145237339	145351906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_145237496_145343687_145343746_145347127_145347255_145348721_145349286_145349370_145350039_145350964
ENSMUSG00000078502.11_87	chr4	+	1083	1	ISM	ENSMUSG00000078502.11	ENSMUST00000105739.8	3595	4	39092	5	7112	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	145350827	145351910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_145350800_145351900
ENSMUSG00000078503.10_18	chr4	+	2738	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	18	240	0	-240	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATATCCTTAAAAGAG	912	False	NA	34	True	AATAAA	-44	NA	145237346	145265518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
ENSMUSG00000078503.10_26	chr4	+	3050	5	NIC	ENSMUSG00000078503.10	novel	597	5	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	211.475028076603	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATTTGCTTTGATTGT	913	False	NA	NA	False	NA	NA	NA	145237347	145265751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_145237496_145247375_145247456_145257381_145257486_145261385_145261513_145263160
ENSMUSG00000078503.10_65	chr4	+	2728	4	NIC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	3	-233	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	226.592634969061	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCTTAAAAGAGTATCTGG	5022	False	NA	41	True	AATAAA	-17	NA	145241456	145265525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_145241589_145257381_145257486_145261385_145261513_145263160
ENSMUSG00000078503.10_86	chr4	+	2589	3	ISM	ENSMUSG00000078503.10	ENSMUST00000105741.2	3044	5	15926	242	15926	-242	3prime_fragment	FALSE	canonical	3	98	junction_1	220	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAATATCCTTAAAAG	2625	False	NA	32	True	AATAAA	-42	NA	145257379	145265516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_145257486_145261385_145261513_145263160
ENSMUSG00000078503.10_92	chr4	+	1724	1	ISM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	26466	240	22341	-240	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATATCCTTAAAAGAG	5347	False	NA	34	True	AATAAA	-44	NA	145263794	145265518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_145263800_145265500
ENSMUSG00000078508.2_0	chr4	+	2624	4	NNC	ENSMUSG00000078508.2	novel	1745	3	NA	NA	-3263	781	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	5.90668171555645	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTTTTGAGTATTTTTT	NA	False	NA	NA	False	AATGAA	-10	NA	144053555	144060816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_144053628_144056792_144057106_144057681_144058255_144059150
ENSMUSG00000078508.2_1	chr4	+	2474	3	FSM	ENSMUSG00000078508.2	ENSMUST00000105751.2	1745	3	52	-781	52	781	multi-exon	FALSE	canonical	3	38	junction_1	0.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTTTTGAGTATTTTTT	NA	False	NA	NA	False	AATGAA	-10	NA	144056870	144060816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_144057106_144057681_144058255_144059150
ENSMUSG00000078508.2_2	chr4	+	2217	2	ISM	ENSMUSG00000078508.2	ENSMUST00000105751.2	1745	3	883	-779	883	779	3prime_fragment	FALSE	canonical	3	39	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATCTTTTGAGTATTTT	NA	False	NA	NA	False	AATGAA	-8	NA	144057701	144060814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_144058255_144059150
ENSMUSG00000078509.2_0	chr4	-	1974	2	ISM	ENSMUSG00000078509.2	ENSMUST00000105762.2	1753	3	1135	-780	1135	780	3prime_fragment	FALSE	canonical	1	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTTTTGAGTATTTTTT	NA	False	NA	-14	True	AATAAA	-10	NA	143719804	143716908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_143718582_143719503
ENSMUSG00000078515.5_11	chr4	-	1117	1	FSM	ENSMUSG00000040715.13	ENSMUST00000105782.2	1749	1	915	-283	915	283	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCATACCATTTTAGAATGA	4037	False	NA	-11	True	AATAAA	-19	NA	141411995	141410878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141410900_141412000
ENSMUSG00000078515.5_2	chr4	-	3538	10	FSM	ENSMUSG00000078515.5	ENSMUST00000177592.2	3539	10	-3	4	-3	-4	multi-exon	TRUE	canonical	3	149	junction_7	26.8842971285984	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATACCATTTTAGAATGAG	NA	False	NA	-10	True	AATAAA	-20	NA	141450733	141410877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141412943_141416580_141416643_141419565_141419756_141422717_141422822_141426040_141426170_141430422_141430551_141433242_141433370_141435530_141435768_141440707_141440838_141450367
ENSMUSG00000078515.5_3	chr4	-	2820	1	ISM	ENSMUSG00000078515.5	ENSMUST00000102484.5	9553	10	39986	3065	39986	2949	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACAAGAGTGTAAGGCAA	5288	False	NA	-26	True	AATAAA	-17	NA	141410744	141407924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_141407900_141410700
ENSMUSG00000078517.13_0	chr4	+	4924	23	FSM	ENSMUSG00000078517.13	ENSMUST00000042096.15	4706	23	-1	-217	0	217	multi-exon	FALSE	canonical	3	332	junction_13	34.6303979591618	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCAGCTTTGTTTTGTGTC	NA	False	NA	13	True	AATAAA	-15	NA	139079919	139104764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_139080029_139081471_139081597_139082122_139082189_139082402_139082497_139084813_139084943_139086550_139086678_139087340_139087491_139087767_139087936_139088190_139088263_139088572_139088636_139089406_139089530_139090476_139090574_139090967_139091091_139092505_139092706_139092828_139092979_139093685_139093848_139094404_139094525_139097185_139097324_139098234_139098409_139098906_139099118_139101119_139101205_139102390_139102521_139102656
ENSMUSG00000078517.13_61	chr4	+	1593	1	ISM	ENSMUSG00000078517.13	ENSMUST00000179784.9	6232	24	23274	1277	16614	217	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCAGCTTTGTTTTGTGTC	NA	False	NA	13	True	AATAAA	-15	NA	139103171	139104764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_139103200_139104800
ENSMUSG00000078521.3_0	chr4	+	1239	3	FSM	ENSMUSG00000078521.3	ENSMUST00000105866.3	1275	3	31	5	31	-5	multi-exon	FALSE	canonical	3	435	junction_2	7.5	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGCTGGTTGGTGTCGTG	NA	False	NA	15	True	AATAAA	-15	NA	134238340	134251233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_134238481_134248782_134248913_134250264
ENSMUSG00000078521.3_8	chr4	+	456	1	ISM	ENSMUSG00000078521.3	ENSMUST00000105866.3	1275	3	12469	4	12469	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTGGTTGGTGTCGTGC	3823	False	NA	16	True	AATAAA	-16	NA	134250778	134251234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_134250800_134251200
ENSMUSG00000078532.10_0	chr4	+	2690	7	FSM	ENSMUSG00000078532.10	ENSMUST00000105993.4	1202	7	-8	-1480	-8	1464	multi-exon	FALSE	canonical	3	69	junction_2	13.2748718344933	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGTATCTGTCTTGCC	NA	False	NA	12	True	ATTAAA	-18	NA	130297188	130341108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_130297542_130332055_130332194_130333903_130333985_130337200_130337399_130338581_130338643_130339094_130339177_130339331
ENSMUSG00000078532.10_2	chr4	+	2714	7	FSM	ENSMUSG00000078532.10	ENSMUST00000180884.8	1028	7	-225	-1461	-18	1461	multi-exon	TRUE	canonical	3	9	junction_3	30.3790863735052	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCACTGTGTATCTGTCTT	NA	False	NA	9	True	ATTAAA	-15	NA	130297178	130341105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_130297542_130332055_130332194_130333903_130333985_130337183_130337399_130338581_130338643_130339094_130339177_130339331
ENSMUSG00000078532.10_4	chr4	+	2693	7	NNC	ENSMUSG00000078532.10	novel	1202	7	NA	NA	-18	1463	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	31.3975405972435	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGTGTATCTGTCTTGC	NA	False	NA	11	True	ATTAAA	-17	NA	130297178	130341107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_130297542_130332055_130332194_130333903_130333985_130337200_130337399_130338581_130338643_130339094_130339171_130339331
ENSMUSG00000078532.10_8	chr4	+	2296	6	ISM	ENSMUSG00000078532.10	ENSMUST00000105993.4	1202	7	34898	-1478	18849	1462	3prime_fragment	FALSE	canonical	3	69	junction_1	13.9570770578943	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGTGTATCTGTCTTG	NA	False	NA	10	True	ATTAAA	-16	NA	130332094	130341106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_130332194_130333903_130333985_130337200_130337399_130338581_130338643_130339094_130339177_130339331
ENSMUSG00000078546.9_0	chr17	-	2626	5	NNC	ENSMUSG00000078546.9	novel	2221	5	NA	NA	-32	660	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	6.01560470775798	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTCGTTGTTTCCATTT	NA	False	NA	NA	False	NA	NA	NA	22128652	22097890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_22100076_22100938_22101060_22106285_22106340_22127029_22127178_22128534
ENSMUSG00000078546.9_1	chr17	-	2606	5	FSM	ENSMUSG00000078546.9	ENSMUST00000190066.7	2221	5	270	-655	-17	655	multi-exon	FALSE	canonical	2	10	junction_1	2.29128784747792	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGAACTTCGTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	22128637	22097895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_22100076_22100938_22101066_22106291_22106340_22127029_22127178_22128534
ENSMUSG00000078546.9_2	chr17	-	527	4	ISM	ENSMUSG00000078546.9	ENSMUST00000190066.7	2221	5	288	2269	1	-2269	5prime_fragment	FALSE	canonical	2	13	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTCTTCATTGCTTTTCC	NA	False	NA	NA	False	AATAAA	-22	NA	22128619	22100819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_22101066_22106291_22106340_22127029_22127178_22128534
ENSMUSG00000078566.9_0	chr7	-	1617	6	FSM	ENSMUSG00000078566.9	ENSMUST00000106112.2	1756	6	7	132	-4	-132	multi-exon	FALSE	canonical	3	289	junction_2	24.8628236529965	284	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTTGTTTATATTTAC	NA	False	NA	-28	True	AATAAA	-15	NA	138511228	138492696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_138493690_138496108_138496259_138496338_138496446_138499724_138499807_138500409_138500558_138511091
ENSMUSG00000078570.11_1	chr4	-	1417	2	NIC	ENSMUSG00000078570.11	novel	762	3	NA	NA	24	5	intron_retention	FALSE	canonical	3	65	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAACTATTTGGGACT	7679	False	NA	NA	False	AATAAA	-22	NA	124744499	124742867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_124744227_124744441
ENSMUSG00000078570.11_2	chr4	-	1188	3	FSM	ENSMUSG00000078570.11	ENSMUST00000185036.2	1223	3	33	2	33	-2	multi-exon	FALSE	canonical	3	65	junction_2	68	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGGTGACTGACCTTTC	7222	False	NA	-9	True	ATTAAA	-14	NA	124744956	124743284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_124743756_124744024_124744227_124744441
ENSMUSG00000078570.11_4	chr4	-	735	3	FSM	ENSMUSG00000078570.11	ENSMUST00000106190.10	968	3	224	9	76	-4	multi-exon	FALSE	canonical	3	24	junction_2	88.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCTGGTGACTGACCTT	7800	False	NA	-11	True	ATTAAA	-12	NA	124744378	124743286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_124743756_124744024_124744227_124744314
ENSMUSG00000078570.11_5	chr4	-	672	2	FSM	ENSMUSG00000078570.11	ENSMUST00000137769.3	659	2	39	-52	39	-4	multi-exon	FALSE	canonical	3	201	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCTGGTGACTGACCTT	7951	False	NA	-11	True	ATTAAA	-12	NA	124744227	124743286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_124743756_124744024
ENSMUSG00000078570.11_8	chr4	-	750	3	FSM	ENSMUSG00000078570.11	ENSMUST00000125776.8	761	3	3	8	3	-4	multi-exon	FALSE	canonical	3	59	junction_2	71	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCTGGTGACTGACCTT	7727	False	NA	-11	True	ATTAAA	-12	NA	124744451	124743286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_124743756_124744024_124744227_124744372
ENSMUSG00000078572.4_0	chr11	+	574	2	FSM	ENSMUSG00000078572.4	ENSMUST00000186913.2	401	2	-171	-2	0	2	multi-exon	FALSE	canonical	3	883	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGAACTGGTCTCTCCC	NA	False	NA	8	True	TATAAA	-8	NA	119989753	119991242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119990085_119990999
ENSMUSG00000078572.4_1	chr11	+	482	3	FSM	ENSMUSG00000078572.4	ENSMUST00000106223.4	781	3	10	289	-6	2	multi-exon	FALSE	canonical	3	883	junction_2	30.5	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGAACTGGTCTCTCCC	NA	False	NA	8	True	TATAAA	-8	NA	119989763	119991242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_119989892_119989973_119990085_119990999
ENSMUSG00000078578.10_10	chr3	+	1900	8	FSM	ENSMUSG00000078578.10	ENSMUST00000199613.5	738	8	63	-1225	63	-9	multi-exon	FALSE	canonical	2	236	junction_1	865.692126071883	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGGTGTGGGAGTTGTC	NA	False	NA	-4	True	AATAAA	-6	NA	135144139	135172272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_13	chr3	+	2016	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	59	429	-4	1	multi-exon	FALSE	canonical	2	723	junction_1	704.867942473291	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGTTGTCATGAGGCTGT	NA	False	NA	6	True	AATAAA	-16	NA	135144299	135172282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_17	chr3	+	1970	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	187	1676	-2	2	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTTGTCATGAGGCTGTG	NA	False	NA	7	True	AATAAA	-17	NA	135144512	135172283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_2	chr3	+	1920	8	FSM	ENSMUSG00000078578.10	ENSMUST00000106291.10	1512	8	56	-464	-26	2	multi-exon	FALSE	canonical	2	536	junction_1	766.131549422427	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTTGTCATGAGGCTGTG	NA	False	NA	7	True	AATAAA	-17	NA	135144050	135172283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_24	chr3	+	1908	7	FSM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	-4	611	-4	4	multi-exon	FALSE	canonical	2	2193	junction_4	278.873129258131	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAGCTGCCTGGATTAAT	NA	False	NA	77	True	AATAAA	-17	NA	135144893	135171823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_76	chr3	+	928	1	ISM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	27121	422	3143	8	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATGAGGCTGTGTTGAAG	NA	False	NA	13	True	AATAAA	-23	NA	135171361	135172289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_135171400_135172300
ENSMUSG00000078584.10_10	chr4	-	1065	4	ISM	ENSMUSG00000078584.10	ENSMUST00000144309.2	441	5	-1	-457	-1	367	intron_retention	FALSE	canonical	3	375	junction_1	15.4344492037203	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGAACCATTTGTCTTTCT	NA	False	NA	-11	True	NA	NA	NA	119089883	119083211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550
ENSMUSG00000078584.10_4	chr4	-	4167	1	ISM	ENSMUSG00000078584.10	ENSMUST00000141112.2	7151	5	8677	27	8643	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATGAATAAATACCTCG	NA	False	NA	NA	False	NA	NA	NA	119081232	119077065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_119077100_119081200
ENSMUSG00000078584.10_5	chr4	-	4017	5	FSM	ENSMUSG00000078584.10	ENSMUST00000144309.2	441	5	6	-3582	-1	-3048	multi-exon	FALSE	canonical	3	17	junction_4	161.922049147113	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTCAGTGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	119089876	119080086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089832
ENSMUSG00000078584.10_6	chr4	-	4903	4	NIC	ENSMUSG00000078584.10	novel	7151	5	NA	NA	-3	-2101	intron_retention	FALSE	canonical	3	29	junction_3	165.023903992388	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAATAATAAATAAATCTTA	NA	False	NA	NA	False	NA	NA	NA	119089878	119079139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_119083725_119083997_119084130_119085223_119085311_119089779
ENSMUSG00000078584.10_7	chr4	-	915	5	FSM	ENSMUSG00000078584.10	ENSMUST00000141112.2	7151	5	26	6210	-1	330	multi-exon	FALSE	canonical	3	317	junction_4	34.1869858279434	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCTTCCTAGCAAGGT	NA	False	NA	-48	True	NA	NA	NA	119089883	119083248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
ENSMUSG00000078607.7_0	chr11	+	1148	3	ISM	ENSMUSG00000078607.7	ENSMUST00000140447.4	1677	5	2481	5	-61	-5	3prime_fragment	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAGAAAGCACCTGGCT	NA	False	NA	NA	False	AGTAAA	-11	NA	106918987	106921259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_106919095_106919191_106919384_106920410
ENSMUSG00000078619.11_0	chr11	-	2648	13	FSM	ENSMUSG00000078619.11	ENSMUST00000021052.16	2747	13	91	8	84	-8	multi-exon	FALSE	canonical	3	510	junction_5	34.2842488939487	1099	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTGGTGCCCAGACCTG	NA	False	NA	-15	True	AATAAA	-12	NA	106163707	106154012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106154946_106155020_106155123_106155258_106155382_106155497_106155634_106155765_106155864_106156008_106156171_106156485_106156588_106156713_106156810_106157362_106157519_106157716_106157840_106157963_106158007_106158159_106158345_106163318
ENSMUSG00000078622.9_1	chr11	-	3223	13	FSM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	18	1952	18	1419	multi-exon	FALSE	canonical	3	609	junction_6	38.2117637500402	1029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAATCTGTGTGCTGCTT	NA	False	NA	-10	True	ATTAAA	-8	NA	106107152	106090185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
ENSMUSG00000078622.9_6	chr11	-	4218	12	NIC	ENSMUSG00000078622.9	novel	5193	13	NA	NA	17	1419	intron_retention	FALSE	canonical	3	609	junction_5	39.8138229245543	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAATCTGTGTGCTGCTT	NA	False	NA	-10	True	ATTAAA	-8	NA	106107153	106090185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
ENSMUSG00000078626.3_0	chr4	-	1973	3	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9758	1205	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	2.5	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTGTTTGTTTCTTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	101828488	101823444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_101824980_101825125_101825438_101828362
ENSMUSG00000078626.3_1	chr4	-	2052	4	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9758	1205	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	5.43650214343336	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTGTTTGTTTCTTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	101828488	101823444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_101824980_101825125_101825438_101827043_101827123_101828362
ENSMUSG00000078636.5_1	chr7	+	1246	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-14	0	-14	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1280	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	51396380	51397626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_51396400_51397600
ENSMUSG00000078640.10_2	chr11	-	651	2	ISM	ENSMUSG00000078640.10	ENSMUST00000107080.2	585	3	117	-91	117	-2	intron_retention	FALSE	canonical	3	16	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTTGCTTCTTTTTTT	8697	False	NA	NA	False	NA	NA	NA	102469828	102467225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_102467624_102469575
ENSMUSG00000078651.9_1	chr11	+	3333	3	NIC	ENSMUSG00000078651.9	novel	2543	4	NA	NA	826	-20	intron_retention	FALSE	canonical	3	22	junction_2	9.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATTTTAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	101216738	101220508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101219456_101219647_101219778_101220022
ENSMUSG00000078652.10_1	chr11	+	2635	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	20	9	20	-9	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	1938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGCAGACCCTGGTGC	NA	False	NA	25	True	ATTAAA	-26	NA	101207058	101214354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUSG00000078652.10_7	chr11	+	2530	10	NIC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	20	-9	combination_of_known_splicesites	FALSE	canonical	3	51	junction_3	427.085471539363	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGCAGACCCTGGTGC	NA	False	NA	25	True	ATTAAA	-26	NA	101207058	101214354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101207315_101208006_101208040_101208154_101208218_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUSG00000078652.10_71	chr11	+	1410	1	ISM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	5906	9	2285	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGCAGACCCTGGTGC	NA	False	NA	25	True	ATTAAA	-26	NA	101212944	101214354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_101212900_101214400
ENSMUSG00000078652.10_9	chr11	+	2709	12	NIC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	21	-9	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	514.270726529606	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGCAGACCCTGGTGC	NA	False	NA	25	True	ATTAAA	-26	NA	101207059	101214354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101207315_101207846_101207922_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUSG00000078653.5_0	chr11	+	2324	7	FSM	ENSMUSG00000078653.5	ENSMUST00000103107.5	2335	7	11	0	11	0	multi-exon	FALSE	canonical	2	14	junction_6	3.09120616516523	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGTATTGTAAACATG	NA	False	NA	9	True	AATAAA	-14	NA	101169932	101179527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101170307_101174217_101174294_101174546_101174719_101175585_101175749_101176490_101176636_101177679_101177777_101178230
ENSMUSG00000078656.12_0	chr11	+	1073	6	FSM	ENSMUSG00000078656.12	ENSMUST00000042477.13	1106	6	29	4	1	0	multi-exon	FALSE	canonical	3	1136	junction_3	45.4682306671372	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCGGCCTGTTACTACT	NA	False	NA	16	True	ATTAAA	-13	NA	101144561	101150371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
ENSMUSG00000078656.12_2	chr11	+	586	6	FSM	ENSMUSG00000078656.12	ENSMUST00000007533.15	615	6	29	0	1	0	multi-exon	FALSE	canonical	3	39	junction_5	475.771541813926	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTGTGACTCTTTA	NA	False	NA	1	True	AGTAAA	-17	NA	101144561	101148875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101148726
ENSMUSG00000078670.4_0	chr7	+	2665	3	FSM	ENSMUSG00000078670.4	ENSMUST00000107456.4	2683	3	-1	19	-1	-19	multi-exon	FALSE	canonical	3	29	junction_2	1.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAAAAATAACCTTCAG	NA	False	NA	NA	False	AATAAA	-13	NA	73390048	73426648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_73390577_73416234_73416367_73424643
ENSMUSG00000078670.4_4	chr7	+	1713	1	ISM	ENSMUSG00000078670.4	ENSMUST00000107456.4	2683	3	34886	19	9252	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAAAAATAACCTTCAG	6304	False	NA	NA	False	AATAAA	-13	NA	73424935	73426648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_73424900_73426600
ENSMUSG00000078671.12_3	chr7	-	4134	6	ISM	ENSMUSG00000078671.12	ENSMUST00000199809.5	5289	15	19337	4	-2017	-4	3prime_fragment	FALSE	canonical	3	20	junction_2	3.31058907144937	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGCTGTACTTTTTTG	6223	False	NA	-13	True	ATTAAA	-15	NA	73098998	73076445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_73079749_73085482_73085727_73091333_73091548_73093982_73094083_73096882_73097062_73098904
ENSMUSG00000078671.12_30	chr7	-	2682	15	NIC	ENSMUSG00000078671.12	novel	9085	39	NA	NA	1	7448	combination_of_known_junctions	FALSE	canonical	2	3	junction_10	12.7585505542322	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAACTTTCTGATGTTCT	NA	False	NA	-3	True	NA	NA	NA	73191492	73140006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
ENSMUSG00000078671.12_31	chr7	-	3613	14	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	22216	61988	-15961	9081	internal_fragment	FALSE	canonical	3	31	junction_10	5.66417162846311	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAATAAAAAATTAT	NA	False	NA	NA	False	NA	NA	NA	73169278	73138373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73157553_73157662_73163837_73163900_73165473_73165561_73169224
ENSMUSG00000078671.12_34	chr7	-	2785	16	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	2	63626	1	7443	5prime_fragment	FALSE	canonical	3	19	junction_14	8.62142035217451	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCTGGAAACTTTCTGAT	NA	False	NA	-8	True	NA	NA	NA	73191492	73140011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73157553_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
ENSMUSG00000078671.12_37	chr7	-	1871	13	NIC	ENSMUSG00000078671.12	novel	9085	39	NA	NA	-15961	7447	combination_of_known_junctions	FALSE	canonical	2	3	junction_10	11.9408263253986	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAAACTTTCTGATGTTC	NA	False	NA	-4	True	NA	NA	NA	73169278	73140007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73163837_73163900_73165473_73165561_73169224
ENSMUSG00000078671.12_39	chr7	-	1574	2	FSM	ENSMUSG00000078671.12	ENSMUST00000200218.2	1387	2	-193	6	18	-6	multi-exon	FALSE	canonical	3	24	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATATTTTTTGTTGTATG	NA	False	NA	NA	False	AATAAA	-7	NA	73191466	73189551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_73190653_73190993
ENSMUSG00000078671.12_4	chr7	-	1944	1	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	113105	60	15610	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGCTGTACTTTTTTG	NA	False	NA	-13	True	ATTAAA	-15	NA	73078389	73076445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_73076400_73078400
ENSMUSG00000078671.12_5	chr7	-	4009	5	ISM	ENSMUSG00000078671.12	ENSMUST00000199809.5	5289	15	21304	5	-50	-5	3prime_fragment	FALSE	canonical	3	20	junction_2	3.67423461417477	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACTGCTGTACTTTTTT	8190	False	NA	-14	True	ATTAAA	-14	NA	73097031	73076446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_73079749_73085482_73085727_73091333_73091548_73093982_73094083_73096882
ENSMUSG00000078671.12_9	chr7	-	3483	2	ISM	ENSMUSG00000078671.12	ENSMUST00000208458.2	745	5	8337	-2944	8337	-4	3prime_fragment	FALSE	canonical	3	29	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGCTGTACTTTTTTG	NA	False	NA	-13	True	ATTAAA	-15	NA	73085662	73076445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_73079749_73085482
ENSMUSG00000078676.10_0	chr11	+	3713	14	FSM	ENSMUSG00000078676.10	ENSMUST00000169695.2	3741	14	21	7	21	-7	multi-exon	FALSE	canonical	3	273	junction_12	18.9446406216646	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGACTCTGTGGCCAG	303	False	NA	7	True	AATAAA	-12	NA	98700654	98724625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_98700918_98701284_98701313_98701723_98701762_98712256_98712410_98712485_98712638_98713186_98713364_98713545_98714226_98718397_98718463_98719380_98719496_98719685_98719785_98720039_98720255_98722113_98722237_98722368_98722435_98723086
ENSMUSG00000078676.10_37	chr11	+	2573	8	ISM	ENSMUSG00000078676.10	ENSMUST00000169695.2	3741	14	13241	7	12888	-7	3prime_fragment	FALSE	canonical	3	273	junction_6	10.7018976001875	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGACTCTGTGGCCAG	NA	False	NA	7	True	AATAAA	-12	NA	98713874	98724625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_98714226_98718397_98718463_98719380_98719496_98719685_98719785_98720039_98720255_98722113_98722237_98722368_98722435_98723086
ENSMUSG00000078681.11_0	chr7	+	852	5	FSM	ENSMUSG00000078681.11	ENSMUST00000032726.14	908	5	54	2	-5	0	multi-exon	FALSE	canonical	3	473	junction_3	21.6333076527839	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCACGACAACCCAGAACT	NA	False	NA	15	True	AATAAA	-15	NA	65343209	65351648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_65343318_65344890_65345076_65347443_65347619_65348839_65348916_65351340
ENSMUSG00000078681.11_1	chr7	+	948	6	FSM	ENSMUSG00000078681.11	ENSMUST00000107495.5	1003	6	41	14	-9	-1	multi-exon	FALSE	canonical	3	37	junction_2	226.65709783724	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCACGACAACCCAGAAC	NA	False	NA	14	True	AATAAA	-14	NA	65343205	65351647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_65343318_65343598_65343692_65344890_65345076_65347443_65347619_65348839_65348916_65351340
ENSMUSG00000078681.11_3	chr7	+	827	5	NIC	ENSMUSG00000078681.11	novel	905	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	208.078711068672	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCACGACAACCCAGAACT	NA	False	NA	15	True	AATAAA	-15	NA	65343207	65351648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_65343318_65344917_65345076_65347443_65347619_65348839_65348916_65351340
ENSMUSG00000078681.11_9	chr7	+	2073	4	NIC	ENSMUSG00000078681.11	novel	908	5	NA	NA	-7	-2	intron_retention	FALSE	canonical	3	497	junction_3	14.9666295470958	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAACCACGACAACCCAGAA	NA	False	NA	13	True	AATAAA	-13	NA	65343207	65351646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_65343318_65344890_65345076_65347443_65348916_65351340
ENSMUSG00000078684.9_43	chr3	+	3324	6	NNC	ENSMUSG00000078684.9	novel	6190	19	NA	NA	42114	384	at_least_one_novel_splicesite	FALSE	canonical	3	125	junction_1	81.3324043662795	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAAATCTTGGGTCTGG	7718	False	NA	7	True	AATATA	-8	NA	88724636	88733278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_88725069_88726976_88727094_88727354_88729107_88730848_88731105_88731656_88731842_88732696
ENSMUSG00000078684.9_5	chr3	+	6550	19	NNC	ENSMUSG00000078684.9	novel	6190	19	NA	NA	15	384	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	100.330149451144	50	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAAATCTTGGGTCTGG	NA	False	NA	7	True	AATATA	-8	NA	88682537	88733278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_88682582_88684290_88684822_88691614_88691807_88695643_88695746_88696664_88696706_88702770_88702795_88706921_88707026_88715213_88715410_88715859_88715950_88717975_88718145_88719320_88719466_88720990_88721142_88722938_88723056_88723316_88725069_88726976_88727094_88727354_88729107_88730848_88731105_88731656_88731842_88732696
ENSMUSG00000078684.9_50	chr3	+	1991	4	ISM	ENSMUSG00000078684.9	ENSMUST00000135913.2	6190	19	45621	-389	45621	389	3prime_fragment	FALSE	canonical	3	272	junction_3	35.9845645921816	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTTGGGTCTGGTTTTG	NA	False	NA	12	True	AATATA	-13	NA	88728143	88733283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88729107_88730848_88731105_88731656_88731842_88732696
ENSMUSG00000078684.9_52	chr3	+	1071	3	ISM	ENSMUSG00000078684.9	ENSMUST00000135913.2	6190	19	48283	-389	48283	389	3prime_fragment	FALSE	canonical	3	272	junction_2	41	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTTGGGTCTGGTTTTG	NA	False	NA	12	True	AATATA	-13	NA	88730805	88733283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_88731105_88731656_88731842_88732696
ENSMUSG00000078684.9_6	chr3	+	6529	18	NNC	ENSMUSG00000078684.9	novel	6190	19	NA	NA	12	384	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	105.578944372492	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAAATCTTGGGTCTGG	NA	False	NA	7	True	AATATA	-8	NA	88682534	88733278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_88682582_88684290_88684822_88691614_88691807_88695643_88695746_88696664_88696706_88706921_88707026_88715213_88715410_88715859_88715950_88717975_88718145_88719320_88719466_88720990_88721142_88722938_88723056_88723316_88725069_88726976_88727094_88727354_88729107_88730848_88731105_88731656_88731842_88732696
ENSMUSG00000078689.9_1	chr4	+	872	7	FSM	ENSMUSG00000078689.9	ENSMUST00000107521.8	642	7	-79	-151	-79	-3	multi-exon	FALSE	canonical	3	12	junction_2	4.92442890089805	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATATGTCTCTGTGTCC	-15	True	NA	NA	False	AATAAA	-18	NA	59964214	60007271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_59964368_60003977_60004112_60004813_60004888_60005471_60005583_60005921_60006024_60006188_60006235_60007019
ENSMUSG00000078695.9_0	chr11	+	726	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	9	2	9	-2	multi-exon	FALSE	canonical	3	940	junction_1	75.5	350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAACTGTTTCTGTGGTC	2461	False	NA	-3	True	AATAAA	-19	NA	97576787	97579445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_97577042_97577326_97577447_97579093
ENSMUSG00000078700.11_0	chr11	+	1198	3	ISM	ENSMUSG00000078700.11	ENSMUST00000107628.8	1216	6	-42	6601	-18	-5	5prime_fragment	FALSE	canonical	2	4	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAACGAAAATAAAGTTGGA	4769	False	NA	NA	False	AATAAA	-17	NA	96834972	96844287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96835041_96835670_96835920_96843406
ENSMUSG00000078700.11_1	chr11	+	3944	6	FSM	ENSMUSG00000078700.11	ENSMUST00000135825.9	2801	6	-8	-1135	-8	1135	multi-exon	TRUE	canonical	1	2	junction_3	5.35163526410386	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACTAAAAAATACAA	4779	False	NA	NA	False	NA	NA	NA	96834982	96857021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96835041_96835670_96835920_96843406_96843555_96850379_96851108_96851686_96851823_96854396
ENSMUSG00000078700.11_15	chr11	+	2130	2	ISM	ENSMUSG00000078700.11	ENSMUST00000131501.8	3542	7	27934	-354	15	354	3prime_fragment	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCACACACGTCCACAGT	4826	False	NA	NA	False	AATAAA	-9	NA	96835029	96844646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96835920_96843406
ENSMUSG00000078700.11_2	chr11	+	2920	5	ISM	ENSMUSG00000078700.11	ENSMUST00000135825.9	2801	6	-14	2469	-14	-1304	5prime_fragment	FALSE	canonical	2	2	junction_3	5.80409338312195	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTATGTGGGTGTTTTT	4773	False	NA	NA	False	ATTAAA	-13	NA	96834976	96853417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_96835041_96835670_96835920_96843406_96843555_96850379_96851108_96851686
ENSMUSG00000078700.11_5	chr11	+	4668	6	NIC	ENSMUSG00000078700.11	novel	959	6	NA	NA	56	1811	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	5.6	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAACAAAAGCCCC	4867	False	NA	NA	False	NA	NA	NA	96835070	96857697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_96835177_96835670_96835920_96843406_96843555_96850379_96851108_96851686_96851823_96854396
ENSMUSG00000078706.5_2	chr11	+	1234	2	FSM	ENSMUSG00000078706.5	ENSMUST00000150490.3	3257	2	-446	2469	93	536	multi-exon	FALSE	canonical	3	27	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACATCTGTGTGTGTGTG	8368	False	NA	NA	False	NA	NA	NA	96142023	96153055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96142640_96152437
ENSMUSG00000078706.5_6	chr11	+	593	2	FSM	ENSMUSG00000078706.5	ENSMUST00000139381.2	119	2	-136	-338	-136	338	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTCTGTGTCTAGGTCTG	9566	False	NA	NA	False	AAGAAA	-34	NA	96143221	96152857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_96143395_96152437
ENSMUSG00000078706.5_9	chr11	+	1434	5	NNC	ENSMUSG00000078706.5	novel	757	3	NA	NA	-111	2424	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	9.17537465175128	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTAACAAGGTTGTTGTA	8703	False	NA	NA	False	AAGAAA	-19	NA	96142358	96158118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_96142640_96152437_96152836_96154999_96155212_96155549_96155672_96157697
ENSMUSG00000078713.9_0	chr4	-	2855	1	NIC	ENSMUSG00000078713.9	novel	639	2	NA	NA	-31	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGCGTGGTTTTGTGT	29	True	NA	NA	False	AATAAA	-11	NA	45108069	45105214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_45105200_45108100
ENSMUSG00000078713.9_1	chr4	-	619	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107810.3	639	2	13	7	7	-3	multi-exon	FALSE	canonical	3	2176	junction_1	0	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGCGTGGTTTTGTGT	-3	True	NA	NA	False	AATAAA	-11	NA	45108101	45105214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_45105645_45107912
ENSMUSG00000078713.9_2	chr4	-	669	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107808.3	679	3	7	3	7	-3	multi-exon	FALSE	canonical	3	56	junction_2	2	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGCGTGGTTTTGTGT	-3	True	NA	NA	False	AATAAA	-11	NA	45108101	45105214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_45105645_45106838_45106889_45107912
ENSMUSG00000078716.11_1	chr4	+	4896	13	FSM	ENSMUSG00000078716.11	ENSMUST00000107866.9	5102	13	-211	417	8	-141	multi-exon	FALSE	canonical	2	4	junction_9	2.419538523493	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTGAGGGTATACAGGC	-14	True	NA	NA	False	NA	NA	NA	43669294	43692251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_43670035_43673899_43674090_43674436_43674645_43680658_43680793_43681045_43681315_43681958_43682285_43685296_43685391_43685525_43685650_43685727_43685871_43686010_43686190_43689426_43689574_43689690_43689808_43690026
ENSMUSG00000078716.11_10	chr4	+	4512	12	ISM	ENSMUSG00000078716.11	ENSMUST00000107866.9	5102	13	4443	12	-511	-12	3prime_fragment	FALSE	canonical	2	4	junction_8	2.51606409147237	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAGAAGAAATGCTACTC	4276	False	NA	NA	False	NA	NA	NA	43673948	43692656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_43674090_43674436_43674645_43680658_43680793_43681045_43681315_43681958_43682285_43685296_43685391_43685525_43685650_43685727_43685871_43686010_43686190_43689426_43689574_43689690_43689808_43690026
ENSMUSG00000078716.11_7	chr4	+	5300	13	NIC	ENSMUSG00000078716.11	novel	5102	13	NA	NA	5	-12	intron_retention	FALSE	canonical	0	0	junction_12	3.83966867783609	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAGAAGAAATGCTACTC	-17	True	NA	NA	False	NA	NA	NA	43669291	43692656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_43670035_43673899_43674090_43674436_43674645_43680658_43680793_43681045_43681315_43681958_43682285_43685296_43685391_43685525_43685650_43685727_43685871_43686010_43686190_43689426_43689574_43689690_43689808_43690030
ENSMUSG00000078716.11_8	chr4	+	4958	12	NIC	ENSMUSG00000078716.11	novel	5102	13	NA	NA	82	-12	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	2.80495429464391	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAGAAGAAATGCTACTC	60	False	NA	NA	False	NA	NA	NA	43669368	43692656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_43670035_43673899_43674090_43674436_43674645_43680658_43680793_43681958_43682285_43685296_43685391_43685525_43685650_43685727_43685871_43686010_43686190_43689426_43689574_43689690_43689808_43690026
ENSMUSG00000078762.11_0	chr7	-	2141	19	FSM	ENSMUSG00000078762.11	ENSMUST00000019697.9	2187	19	44	2	10	-2	multi-exon	FALSE	canonical	3	112	junction_13	34.9573373142001	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAGCACTGCCCAGTT	NA	False	NA	-11	True	AATAAA	-8	NA	30364375	30353142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
ENSMUSG00000078762.11_9	chr7	-	2328	18	NIC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	10	-2	intron_retention	FALSE	canonical	3	112	junction_12	35.9706724062312	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAGCACTGCCCAGTT	NA	False	NA	-11	True	AATAAA	-8	NA	30364375	30353142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
ENSMUSG00000078765.12_1	chr7	+	2027	1	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	2	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	29	True	AATAAA	-17	NA	30262756	30264783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30262800_30264800
ENSMUSG00000078765.12_11	chr7	+	806	8	FSM	ENSMUSG00000078765.12	ENSMUST00000163330.3	583	8	10	-233	-2	-1	multi-exon	FALSE	canonical	3	25	junction_1	197.894529732277	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	29	True	AATAAA	-17	NA	30262741	30264783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30262775_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_18	chr7	+	855	8	FSM	ENSMUSG00000078765.12	ENSMUST00000166510.8	835	8	-13	-7	6	-1	multi-exon	FALSE	canonical	1	16	junction_4	198.242173070398	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	29	True	AATAAA	-17	NA	30262737	30264783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263527_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_2	chr7	+	1404	5	FSM	ENSMUSG00000078765.12	ENSMUST00000169911.8	656	5	2	-750	2	-1	multi-exon	FALSE	canonical	3	74	junction_1	238.867117871004	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	29	True	AATAAA	-17	NA	30262756	30264783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627
ENSMUSG00000078765.12_20	chr7	+	1006	7	NIC	ENSMUSG00000078765.12	novel	500	7	NA	NA	0	-1	intron_retention	FALSE	canonical	3	74	junction_1	196.028909432597	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	29	True	AATAAA	-17	NA	30262763	30264783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_3	chr7	+	842	8	NIC	ENSMUSG00000078765.12	novel	860	8	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	195.900745380962	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	29	True	AATAAA	-17	NA	30262764	30264783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30262834_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_4	chr7	+	840	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	74	junction_1	181.681713163321	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	29	True	AATAAA	-17	NA	30262757	30264783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_5	chr7	+	872	8	FSM	ENSMUSG00000078765.12	ENSMUST00000167361.8	860	8	-15	3	-1	-1	multi-exon	FALSE	canonical	3	61	junction_1	185.966751472034	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	29	True	AATAAA	-17	NA	30262759	30264783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30262834_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_9	chr7	+	4067	4	ISM	ENSMUSG00000078765.12_ENSMUSG00000036826.15	ENSMUST00000168555.8	883	6	1	-2794	0	-1	intron_retention	FALSE	canonical	3	74	junction_1	268.761356349209	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATCTGCCTGTCCTCATT	NA	False	NA	NA	False	AATAAA	-16	NA	30262764	30267383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506
ENSMUSG00000078768.3_0	chr7	-	1653	4	FSM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	53	3	-11	-3	multi-exon	FALSE	canonical	3	90	junction_1	16.2685791225499	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAATCTGTGTGGCAGTG	9976	False	NA	-1	True	AAAACA	-19	NA	29789899	29776764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29778044_29780515_29780643_29786524_29786585_29789712
ENSMUSG00000078773.12_1	chr4	+	2906	15	FSM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	-36	0	-6	0	multi-exon	FALSE	canonical	3	142	junction_12	66.7496464868725	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	-11	True	NA	19	True	AGTAAA	-16	NA	11558935	11615805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
ENSMUSG00000078773.12_18	chr4	+	2415	4	FSM	ENSMUSG00000078773.12	ENSMUST00000095145.12	2403	4	-8	-4	-8	4	multi-exon	FALSE	canonical	3	32	junction_3	85.9883713068226	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATTGAATTTATGTTA	-13	True	NA	NA	False	AATAAA	-13	NA	11558933	11585748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11583676
ENSMUSG00000078773.12_29	chr4	+	2684	14	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	1	-7	combination_of_known_splicesites	FALSE	canonical	3	84	junction_13	71.5348220745028	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGCTTTCTTGTGTGTA	3	True	NA	12	True	AGTAAA	-9	NA	11558949	11615798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11615442
ENSMUSG00000078773.12_4	chr4	+	2499	5	NNC	ENSMUSG00000078773.12	novel	2403	4	NA	NA	9	5	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	91.7261549395809	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTGAATTTATGTTAT	-16	True	NA	NA	False	AATAAA	-14	NA	11558930	11585749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633_11578714_11583676
ENSMUSG00000078773.12_7	chr4	+	5551	13	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	9	0	intron_retention	FALSE	canonical	3	154	junction_7	67.3700394999307	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	-16	True	NA	19	True	AGTAAA	-16	NA	11558930	11615805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11612439_11612617_11612819_11615442
ENSMUSG00000078773.12_80	chr4	+	2688	3	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	940	0	intron_retention	FALSE	canonical	3	283	junction_1	10	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	5828	False	NA	19	True	AGTAAA	-16	NA	11610314	11615805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_11612439_11612617_11612819_11615442
ENSMUSG00000078776.10_2	chr7	+	1019	3	ISM	ENSMUSG00000078776.10	ENSMUST00000150948.2	7895	19	32578	-15	32578	-1	3prime_fragment	FALSE	canonical	3	5	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGTGTCTCCTGCTGTC	1215	False	NA	NA	False	AATAAA	-14	NA	27861818	27864235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_27862400_27863693_27863966_27864069
ENSMUSG00000078779.5_0	chr7	+	3779	5	FSM	ENSMUSG00000078779.5	ENSMUST00000205701.2	3437	5	-8	-334	-8	334	multi-exon	FALSE	canonical	3	101	junction_4	40.2639727299729	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTTTTGTTTATTTTGC	400	False	NA	-3	True	NA	NA	NA	27538023	27556197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_27538135_27542259_27542313_27543709_27543837_27545828_27545928_27552808
ENSMUSG00000078779.5_15	chr7	+	2746	1	Genic_Genomic	ENSMUSG00000078779.5	novel	NA	NA	NA	NA	11171	333	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTTTTTGTTTATTTTG	177	False	NA	-4	True	NA	NA	NA	27553450	27556196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_+_27553400_27556200
ENSMUSG00000078784.9_1	chr3	-	396	4	FSM	ENSMUSG00000078784.9	ENSMUST00000185384.7	435	4	32	7	1	2	multi-exon	FALSE	canonical	3	4849	junction_3	245.494512271773	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTATTTCTTTAAATCT	NA	False	NA	-7	True	AATAAA	-16	NA	14676313	14671350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676269
ENSMUSG00000078784.9_4	chr3	-	1164	3	FSM	ENSMUSG00000078784.9	ENSMUST00000186870.7	1174	3	8	2	1	2	multi-exon	FALSE	canonical	3	4849	junction_2	211	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTATTTCTTTAAATCT	NA	False	NA	-7	True	AATAAA	-16	NA	14676313	14671350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_14672354_14674600_14674718_14676269
ENSMUSG00000078786.10_10	chr7	+	3846	1	ISM	ENSMUSG00000078786.10	ENSMUST00000108379.8	7247	8	10557	3	3706	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGTTGTCTAATTGTCT	NA	False	NA	NA	False	NA	NA	NA	26905762	26909608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_26905800_26909600
ENSMUSG00000078786.10_2	chr7	+	1505	7	FSM	ENSMUSG00000078786.10	ENSMUST00000179391.8	1748	7	82	161	82	-2	multi-exon	FALSE	canonical	2	9	junction_1	4.48763733927875	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTGACATTTTCAGTCCA	NA	False	NA	8	True	NA	NA	NA	26895287	26903584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_26895533_26896330_26896792_26899978_26900048_26900444_26900570_26901832_26901963_26902051_26902123_26903180
ENSMUSG00000078786.10_3	chr7	+	2876	6	ISM	ENSMUSG00000080533.3_ENSMUSG00000078786.10	ENSMUST00000179391.8	1748	7	1465	-1795	123	460	3prime_fragment	FALSE	canonical	2	9	junction_4	4.47213595499958	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTTACTCCCCCTAACT	NA	False	NA	9	True	AATAAA	-11	NA	26896670	26905540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_26896792_26899978_26900048_26900444_26900570_26901832_26901963_26902051_26902123_26903180
ENSMUSG00000078786.10_7	chr7	+	626	1	FSM	ENSMUSG00000080533.3	ENSMUST00000116883.3	120	1	-39	-467	-39	467	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCCCCTAACTTCTCCAT	NA	False	NA	16	True	AATAAA	-18	NA	26904921	26905547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_26904900_26905500
ENSMUSG00000078787.10_0	chr7	+	1610	9	FSM	ENSMUSG00000078787.10	ENSMUST00000108385.3	1631	9	18	3	18	-3	multi-exon	FALSE	canonical	1	2	junction_3	2.78107443266087	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGTAAACTTTTATTTCT	NA	False	NA	NA	False	AATACA	-15	NA	26854524	26858090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_26854729_26855057_26855221_26855581_26855732_26855940_26856102_26856642_26856820_26856895_26857038_26857138_26857327_26857576_26857719_26857807
ENSMUSG00000078789.10_0	chr11	-	2037	13	FSM	ENSMUSG00000078789.10	ENSMUST00000044949.11	2139	13	46	56	46	-3	multi-exon	FALSE	canonical	3	189	junction_12	23.7876893931854	354	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGCCTTTCTCCTGCTGC	NA	False	NA	-3	True	AATAAA	-18	NA	75081299	75068524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993_75075116_75076610_75076675_75076788_75076942_75081224
ENSMUSG00000078794.5_0	chr7	+	2778	4	FSM	ENSMUSG00000078794.5	ENSMUST00000108493.3	2989	4	42	169	42	-169	multi-exon	FALSE	canonical	3	26	junction_3	6.53197264742181	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCTGGATTCTTGTTCTG	NA	False	NA	20	True	AATAAA	-16	NA	16609283	16621218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16609599_16617051_16617149_16617282_16617436_16619005
ENSMUSG00000078794.5_2	chr7	+	1816	1	ISM	ENSMUSG00000078794.5	ENSMUST00000108493.3	2989	4	10157	173	10157	-173	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACCCCTGGATTCTTGT	3785	False	NA	16	True	AATAAA	-12	NA	16619398	16621214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_16619400_16621200
ENSMUSG00000078812.11_1	chr11	-	1235	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	105	3	-91	-3	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	12379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	6376	False	NA	-18	True	AATAAA	-17	NA	69812107	69807548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
ENSMUSG00000078812.11_8	chr11	-	1320	7	FSM	ENSMUSG00000078812.11	ENSMUST00000043419.10	1437	7	114	3	-82	-3	multi-exon	FALSE	canonical	3	627	junction_6	9644.56352477049	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	6385	False	NA	-18	True	AATAAA	-17	NA	69812098	69807548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811988
ENSMUSG00000078813.4_0	chr7	-	1838	4	FSM	ENSMUSG00000078813.4	ENSMUST00000019878.8	2222	4	372	12	372	-12	multi-exon	FALSE	canonical	3	158	junction_3	1.69967317119759	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTGTATAGCAAGCAGGC	9075	False	NA	-31	True	AAAACA	-33	NA	3668467	3663108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_3664360_3665769_3666024_3666680_3666861_3668314
ENSMUSG00000078813.4_1	chr7	-	1580	3	ISM	ENSMUSG00000078813.4	ENSMUST00000019878.8	2222	4	2088	8	2088	-8	3prime_fragment	FALSE	canonical	3	159	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATAGCAAGCAGGCACCA	9979	False	NA	-27	True	AAAACA	-37	NA	3666751	3663104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_3664360_3665769_3666024_3666680
ENSMUSG00000078815.9_2	chr7	+	2538	4	FSM	ENSMUSG00000078815.9	ENSMUST00000183200.8	1977	4	-563	2	-563	-2	multi-exon	FALSE	canonical	3	12	junction_3	6.16441400296898	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTGTCTGTGTTGGAGC	NA	False	NA	NA	False	ATTAAA	-19	NA	3472147	3484181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3473509_3478953_3479029_3480334_3480473_3483217
ENSMUSG00000078815.9_3	chr7	+	2713	5	NNC	ENSMUSG00000078815.9	novel	1977	4	NA	NA	-603	-2	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_3	7.79422863405995	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTGTCTGTGTTGGAGC	NA	False	NA	NA	False	ATTAAA	-19	NA	3472107	3484181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_3473509_3478953_3479029_3480334_3480473_3481159_3481295_3483217
ENSMUSG00000078815.9_5	chr7	+	2435	3	FSM	ENSMUSG00000078815.9	ENSMUST00000108647.3	868	3	-1069	-498	-602	-6	multi-exon	FALSE	canonical	2	4	junction_2	11.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTAGCCTGTCTGTGTTG	NA	False	NA	NA	False	ATTAAA	-15	NA	3472108	3484177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3473509_3478953_3479029_3483217
ENSMUSG00000078816.11_10	chr7	+	1416	5	ISM	ENSMUSG00000078816.11	ENSMUST00000100301.11	3127	18	19935	6	-5381	-6	3prime_fragment	FALSE	canonical	3	29	junction_2	7.17635004720366	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAATGTTTGGATGTTTT	4555	False	NA	5	True	AATAAA	-16	NA	3371972	3379609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
ENSMUSG00000078816.11_12	chr7	+	2990	17	NIC	ENSMUSG00000078816.11	novel	3127	18	NA	NA	45	-4	combination_of_known_splicesites	FALSE	canonical	2	3	junction_7	11.1242977306435	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGTTTGGATGTTTTCT	NA	False	NA	7	True	AATAAA	-18	NA	3352082	3379611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_3352476_3352821_3352854_3353859_3353943_3359079_3359192_3359351_3359484_3360904_3361062_3362213_3362349_3363027_3363058_3367375_3367529_3368046_3368236_3370855_3370948_3371032_3371096_3371971_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
ENSMUSG00000078816.11_2	chr7	+	2910	17	FSM	ENSMUSG00000078816.11	ENSMUST00000172109.4	2119	17	-64	-727	59	-5	multi-exon	FALSE	canonical	3	19	junction_9	8.11802585300146	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATGTTTGGATGTTTTC	NA	False	NA	6	True	AATAAA	-17	NA	3352096	3379610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3352476_3352821_3352854_3353859_3353943_3359079_3359192_3359351_3359484_3360904_3361062_3362213_3362349_3362648_3362737_3363027_3363058_3368046_3368236_3370855_3370948_3371032_3371096_3371971_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
ENSMUSG00000078816.11_3	chr7	+	3089	18	FSM	ENSMUSG00000078816.11	ENSMUST00000100301.11	3127	18	33	5	33	-5	multi-exon	TRUE	canonical	3	18	junction_10	8.64845927034781	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATGTTTGGATGTTTTC	NA	False	NA	6	True	AATAAA	-17	NA	3352070	3379610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3352476_3352821_3352854_3353859_3353943_3359079_3359192_3359351_3359484_3360904_3361062_3362213_3362349_3362648_3362737_3363027_3363058_3367375_3367529_3368046_3368236_3370855_3370948_3371032_3371096_3371971_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
ENSMUSG00000078816.11_8	chr7	+	1831	9	ISM	ENSMUSG00000078816.11	ENSMUST00000100301.11	3127	18	15418	9	-9898	-9	3prime_fragment	FALSE	canonical	3	18	junction_1	9.31312917337669	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTAAAATGTTTGGATGT	38	False	NA	2	True	AATAAA	-13	NA	3367455	3379606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_3367529_3368046_3368236_3370855_3370948_3371032_3371096_3371971_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
ENSMUSG00000078851.5_0	chr11	+	922	1	FSM	ENSMUSG00000078851.5	ENSMUST00000108817.5	2146	1	1	1223	1	-1223	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTTTGGAGTTTTGCTG	NA	False	NA	6	True	TATAAA	-22	NA	58845511	58846433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58845500_58846400
ENSMUSG00000078853.9_0	chr11	+	1954	3	FSM	ENSMUSG00000078853.9	ENSMUST00000035266.11	2022	3	43	25	11	1	multi-exon	FALSE	canonical	2	4	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACATTAAAGTTGCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	58090424	58098392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58090606_58092293_58092544_58096869
ENSMUSG00000078861.9_10	chr2	-	844	1	NIC	ENSMUSG00000078861.9	novel	962	4	NA	NA	9290	184	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177710928	177710084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177710100_177710900
ENSMUSG00000078861.9_3	chr2	-	1367	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	2	3	2	-3	multi-exon	FALSE	canonical	3	51	junction_1	29	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACCAAATTTTAAAAGAAT	NA	False	NA	-17	True	NA	NA	NA	177720267	177710285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_177711409_177711615_177711743_177720150
ENSMUSG00000078861.9_8	chr2	-	3724	4	FSM	ENSMUSG00000078861.9	ENSMUST00000108924.9	962	4	-29	-2733	1	2733	multi-exon	FALSE	canonical	3	15	junction_1	38.724095283887	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTGCTTCATGGTCATAA	NA	False	NA	-3	True	NA	NA	NA	177720247	177706754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_177710194_177711347_177711409_177711615_177711743_177720150
ENSMUSG00000078862.11_0	chr2	-	4632	5	FSM	ENSMUSG00000078862.11	ENSMUST00000108930.9	1807	5	-21	-2804	-21	2804	multi-exon	FALSE	canonical	3	25	junction_3	8.13557004763649	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	177599111	177584525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_177588804_177589962_177590024_177590229_177590357_177595474_177595530_177599000
ENSMUSG00000078862.11_10	chr2	-	1359	4	FSM	ENSMUSG00000078862.11	ENSMUST00000108928.2	767	4	-57	-535	1	535	multi-exon	FALSE	canonical	3	25	junction_2	8.5764535535124	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTAATATTACGTTAACA	NA	False	NA	NA	False	NA	NA	NA	177599089	177588935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_177590024_177590229_177590357_177595474_177595530_177599000
ENSMUSG00000078862.11_2	chr2	-	4618	6	Fusion	ENSMUSG00000078861.9_ENSMUSG00000078862.11	novel	1807	5	NA	NA	1	2804	multi-exon	TRUE	non_canonical	0	0	junction_5	15.3362316101447	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	177720247	177584525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_-_177588804_177589962_177590024_177590229_177590357_177595474_177595530_177599000_177599025_177720174
ENSMUSG00000078864.11_14	chr2	+	4112	6	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	8	2801	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_3	118.732640836461	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	177401088	177415066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_17	chr2	+	4055	6	FSM	ENSMUSG00000078864.11	ENSMUST00000148388.2	744	6	0	-3311	0	2801	multi-exon	FALSE	canonical	3	97	junction_4	86.0497530501977	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	177401080	177415066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_177401169_177404638_177404694_177409531_177409569_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_19	chr2	+	3955	4	NIC	ENSMUSG00000078864.11	novel	744	6	NA	NA	8	2801	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	100.353818506766	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	177401088	177415066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_177401169_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_21	chr2	+	4010	5	NIC	ENSMUSG00000078864.11	novel	744	6	NA	NA	8	2801	combination_of_known_junctions	FALSE	canonical	3	49	junction_2	122.051218756717	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	177401088	177415066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_177401169_177404638_177404694_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_3	chr2	+	3972	4	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1074	3	NA	NA	6	2801	multi-exon	FALSE	canonical	3	66	junction_1	90.6899479913108	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	177190013	177415066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_177190111_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_4	chr2	+	4024	5	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1077	4	NA	NA	8	2800	multi-exon	FALSE	canonical	3	49	junction_2	85.9200209497181	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	177190015	177415065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_177190111_177404638_177404694_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078865.9_12	chr2	-	3140	5	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	5	1731	combination_of_known_junctions	FALSE	canonical	3	253	junction_4	344.203700590217	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTATGTTTCTGTCTGTC	2342	False	NA	NA	False	NA	NA	NA	177269998	177259265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177269922
ENSMUSG00000078865.9_16	chr2	-	279	3	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-13	-966	combination_of_known_splicesites	FALSE	canonical	3	155	junction_2	266.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAATGTGGTAAAGCTTT	2324	False	NA	NA	False	NA	NA	NA	177270016	177261962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177262087_177263226_177263288_177269922
ENSMUSG00000078865.9_18	chr2	-	1388	3	ISM	ENSMUSG00000078865.9	ENSMUST00000108943.2	531	4	3090	-841	3079	841	3prime_fragment	FALSE	canonical	3	782	junction_2	220	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCAAATTTTAAAAGAAT	5427	False	NA	NA	False	NA	NA	NA	177266913	177262178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_177263288_177263479_177263607_177266761
ENSMUSG00000078865.9_32	chr2	-	3013	4	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	5	1731	combination_of_known_splicesites	FALSE	canonical	3	106	junction_2	247.107264158705	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTATGTTTCTGTCTGTC	2342	False	NA	NA	False	NA	NA	NA	177269998	177259265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177262087_177263226_177263288_177266761_177266817_177269922
ENSMUSG00000078865.9_48	chr2	-	391	4	FSM	ENSMUSG00000078865.9	ENSMUST00000108945.8	1348	4	-24	981	-13	-981	multi-exon	FALSE	canonical	3	688	junction_1	226.200992236747	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	2324	False	NA	NA	False	NA	NA	NA	177270016	177261977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_177262087_177263226_177263288_177263479_177263607_177269922
ENSMUSG00000078865.9_6	chr2	-	3161	4	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	3079	1731	combination_of_known_junctions	FALSE	canonical	3	688	junction_1	232.759293882949	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTATGTTTCTGTCTGTC	5427	False	NA	NA	False	NA	NA	NA	177266913	177259265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761
ENSMUSG00000078865.9_68	chr2	-	1327	3	ISM	ENSMUSG00000078865.9	ENSMUST00000108945.8	1348	4	-21	1182	-10	841	5prime_fragment	FALSE	canonical	3	827	junction_2	197.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCAAATTTTAAAAGAAT	2327	False	NA	NA	False	NA	NA	NA	177270013	177262178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_177263288_177263479_177263607_177269922
ENSMUSG00000078866.11_10	chr2	+	3807	7	NNC	ENSMUSG00000078866.11	novel	1569	4	NA	NA	15	1054	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	48.4071275743562	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTATAAGACTTGCCT	NA	False	NA	12	True	NA	NA	NA	177156540	177170976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_177156642_177165078_177165206_177165410_177165472_177166618_177166891_177167562_177167708_177167791_177168002_177168085
ENSMUSG00000078866.11_2	chr2	+	1161	3	ISM	ENSMUSG00000078866.11	ENSMUST00000108952.4	1569	4	-114	1669	-1	-1669	5prime_fragment	FALSE	canonical	3	64	junction_2	12	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTTGAGTTCTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	177156524	177166327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_177156642_177165078_177165206_177165410
ENSMUSG00000078866.11_3	chr2	+	4657	4	FSM	ENSMUSG00000078866.11	ENSMUST00000108952.4	1569	4	-101	-2987	12	1061	multi-exon	FALSE	canonical	3	64	junction_2	23.3666428910958	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	19	True	NA	NA	NA	177156537	177170983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_177156642_177165078_177165206_177165410_177165472_177166618
ENSMUSG00000078866.11_5	chr2	+	4582	5	NNC	ENSMUSG00000078866.11	novel	1569	4	NA	NA	5	1063	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	44.2965856472031	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	NA	False	NA	21	True	NA	NA	NA	177156530	177170985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_177156642_177165078_177165206_177165410_177165472_177166618_177167674_177167757
ENSMUSG00000078867.10_15	chr2	-	1200	4	Fusion	ENSMUSG00000078867.10_ENSMUSG00000083817.2	novel	2135	3	NA	NA	0	-2241	multi-exon	FALSE	canonical	3	29	junction_2	139.104277432436	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTTGAGTTCTTCCT	NA	False	NA	-6	True	NA	NA	NA	177090113	176919506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_-_176920428_176920629_176920757_177086489_177086545_177090016
ENSMUSG00000078867.10_20	chr2	-	4055	6	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	6	2799	combination_of_known_splicesites	FALSE	canonical	3	51	junction_2	99.4633600880244	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	177090106	177076117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177086489_177086545_177090016
ENSMUSG00000078867.10_22	chr2	-	4158	7	FSM	ENSMUSG00000078867.10	ENSMUST00000149689.2	588	7	7	-3577	6	2800	multi-exon	FALSE	canonical	3	26	junction_4	128.500324253806	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	177090106	177076116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177085086_177085189_177086489_177086545_177090016
ENSMUSG00000078867.10_26	chr2	-	443	5	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	7	2	combination_of_known_junctions	FALSE	canonical	3	44	junction_3	128.388083559184	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACCATGACTGTAACCAAT	NA	False	NA	NA	False	NA	NA	NA	177090105	177079691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177079803_177080953_177081015_177081219_177081347_177086489_177086545_177090016
ENSMUSG00000078867.10_33	chr2	-	1437	5	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	10	-5	combination_of_known_splicesites	FALSE	canonical	3	51	junction_1	110.628601636286	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAATTCATATAGATAA	NA	False	NA	NA	False	NA	NA	NA	177090102	177079882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177081015_177081219_177081347_177081614_177081652_177086489_177086545_177090016
ENSMUSG00000078867.10_34	chr2	-	1397	3	NIC	ENSMUSG00000078867.10	novel	1415	4	NA	NA	-25	11	combination_of_known_splicesites	FALSE	canonical	3	30	junction_2	10.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAGACTCATCAGTAT	NA	False	NA	NA	False	NA	NA	NA	177090138	177079866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177081015_177081219_177081347_177090016
ENSMUSG00000078867.10_35	chr2	-	1414	5	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	-32	-136	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	135.257162472085	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAGTACTGTTCCCATTT	NA	False	NA	NA	False	NA	NA	NA	177090145	177080013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_177081015_177081219_177081347_177085086_177085189_177086489_177086545_177090016
ENSMUSG00000078867.10_36	chr2	-	1385	4	FSM	ENSMUSG00000078867.10	ENSMUST00000108955.2	1415	4	25	5	25	-5	multi-exon	FALSE	canonical	3	44	junction_2	139.800651723167	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAATTCATATAGATAA	NA	False	NA	NA	False	NA	NA	NA	177090087	177079882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_177081015_177081219_177081347_177086489_177086545_177090016
ENSMUSG00000078867.10_38	chr2	-	1433	3	NNC	ENSMUSG00000078867.10	novel	1415	4	NA	NA	-161197	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	25.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAATTCATATAGATAA	NA	False	NA	NA	False	NA	NA	NA	177251310	177079882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_177081015_177081219_177081347_177251136
ENSMUSG00000078867.10_39	chr2	-	1526	6	ISM	ENSMUSG00000078867.10	ENSMUST00000149689.2	588	7	8	205	7	-21	5prime_fragment	FALSE	canonical	3	26	junction_3	135.479297311434	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGAAACCAAAATTTAAAA	NA	False	NA	NA	False	NA	NA	NA	177090105	177079898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_177081015_177081219_177081347_177081614_177081652_177085086_177085189_177086489_177086545_177090016
ENSMUSG00000078869.3_10	chr2	-	391	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5311	-846	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_3	127.14908135291	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGCATGACTGTAACCA	NA	False	NA	-41	True	NA	NA	NA	176964140	176957292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176957402_176958542_176958604_176958795_176958923_176964046
ENSMUSG00000078869.3_14	chr2	-	2809	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-10778	1702	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	250.5	35	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTGTCTGTCCATC	NA	False	NA	NA	False	NA	NA	NA	176969607	176954744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176957402_176958542_176958604_176969516
ENSMUSG00000078869.3_29	chr2	-	424	5	Fusion	ENSMUSG00000078868.4_ENSMUSG00000078869.3	novel	1050	3	NA	NA	-72	-846	multi-exon	FALSE	canonical	0	0	junction_3	219.014268941546	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGCATGACTGTAACCA	NA	False	NA	-41	True	NA	NA	NA	177016172	176957292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_-_176957402_176958542_176958604_176958795_176958923_177012912_177012965_177016097
ENSMUSG00000078869.3_32	chr2	-	1343	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5311	-1035	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_2	147.5	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAATTCATACAGATAA	NA	False	NA	-33	True	NA	NA	NA	176964140	176957481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176958604_176958795_176958923_176964046
ENSMUSG00000078869.3_4	chr2	-	2932	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-10776	1700	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	251.786064392417	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTATGTTTCTGTCTGTCCA	NA	False	NA	NA	False	NA	NA	NA	176969605	176954746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176957402_176958542_176958604_176958795_176958923_176969516
ENSMUSG00000078869.3_7	chr2	-	2082	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5312	971	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_2	218	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGTGGAAAACCATGTCA	NA	False	NA	NA	False	ATTAAA	-17	NA	176964141	176955475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176957402_176958542_176958604_176964046
ENSMUSG00000078870.10_1	chr2	-	4427	5	NIC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-11	3169	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	120.131958695428	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	176898225	176881980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176898132
ENSMUSG00000078870.10_17	chr2	-	1373	4	NNC	ENSMUSG00000078870.10	novel	912	4	NA	NA	-71391	454	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	137.950071483208	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTAGATTGCTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	176969605	176886187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176887290_176887494_176887622_176894619_176894675_176969516
ENSMUSG00000078870.10_18	chr2	-	1373	4	FSM	ENSMUSG00000078870.10	ENSMUST00000108964.2	912	4	-7	-454	-7	454	multi-exon	FALSE	canonical	3	79	junction_3	114.822568435923	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTAGATTGCTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	176898221	176886187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_176887290_176887494_176887622_176894619_176894675_176898132
ENSMUSG00000078870.10_19	chr2	-	1322	2	ISM	ENSMUSG00000078870.10	ENSMUST00000133301.8	1113	4	6908	1038	-160	454	internal_fragment	FALSE	canonical	3	326	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTAGATTGCTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	176887714	176886187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_176887290_176887494
ENSMUSG00000078870.10_2	chr2	-	4375	4	NIC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-15	3168	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	147.159777113177	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	176898229	176881981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_176886072_176887228_176887290_176887494_176887622_176898132
ENSMUSG00000078870.10_4	chr2	-	4384	6	NNC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-29	3169	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	118.470924703068	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	176898243	176881980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176883234_176883294_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176898132
ENSMUSG00000078872.10_24	chr2	+	3633	4	FSM	ENSMUSG00000078872.10	ENSMUST00000134614.8	973	4	-38	-2622	-38	2309	multi-exon	FALSE	canonical	3	47	junction_1	50.9313263129874	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGACATCAGACAATAAAGAA	NA	False	NA	96	True	NA	NA	NA	176772010	176781449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_176772113_176776035_176776163_176776368_176776430_176778106
ENSMUSG00000078872.10_26	chr2	+	3542	3	ISM	ENSMUSG00000078872.10	ENSMUST00000134614.8	973	4	3985	-2631	3976	2318	3prime_fragment	FALSE	canonical	3	143	junction_1	10.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAATAAAGAAATGAAGAAA	NA	False	NA	105	True	AAAAAG	-8	NA	176776033	176781458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_176776163_176776368_176776430_176778106
ENSMUSG00000078872.10_3	chr2	+	3560	4	Fusion	ENSMUSG00000083317.2_ENSMUSG00000078872.10	novel	508	4	NA	NA	3	2227	multi-exon	FALSE	canonical	0	0	junction_1	72.866697163763	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	176724450	176781367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_176724562_176776035_176776163_176776368_176776430_176778106
ENSMUSG00000078872.10_4	chr2	+	3537	4	FSM	ENSMUSG00000078872.10	ENSMUST00000108970.9	948	4	-49	-2540	-49	2227	multi-exon	FALSE	canonical	3	143	junction_2	72.8666971637631	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	176766063	176781367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_176766152_176776035_176776163_176776368_176776430_176778106
ENSMUSG00000078872.10_5	chr2	+	1861	3	ISM	ENSMUSG00000078872.10	ENSMUST00000108970.9	948	4	-49	813	-49	-813	5prime_fragment	FALSE	canonical	3	143	junction_2	82	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACCAAAATTTAAAACAAT	NA	False	NA	NA	False	NA	NA	NA	176766063	176778014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_176766152_176776035_176776163_176776368
ENSMUSG00000078872.10_6	chr2	+	3692	5	NNC	ENSMUSG00000078872.10	novel	948	4	NA	NA	-70	2320	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.2441075102934	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAGAAATGAAGAAATA	NA	False	NA	107	True	AAAAAG	-10	NA	176766042	176781460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_176766152_176770406_176770448_176776035_176776163_176776368_176776430_176778106
ENSMUSG00000078872.10_8	chr2	+	385	4	NNC	ENSMUSG00000078872.10	novel	948	4	NA	NA	-49	33908	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	117.565111982916	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACCATGACTGTAATTC	NA	False	NA	NA	False	NA	NA	NA	176766063	176813048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_176766152_176776035_176776163_176776368_176776430_176812939
ENSMUSG00000078875.11_13	chr2	+	4774	6	NNC	ENSMUSG00000078875.11	novel	683	5	NA	NA	4	2784	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	62.3300890421312	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	176692752	176707364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_176692840_176696293_176696349_176697651_176697754_176701473_176701601_176701806_176701868_176703022
ENSMUSG00000078875.11_3	chr2	+	4683	5	NIC	ENSMUSG00000078875.11	novel	683	5	NA	NA	-6	2785	combination_of_known_junctions	FALSE	canonical	3	46	junction_2	44.7178655572915	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	176692742	176707365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176703022
ENSMUSG00000078875.11_8	chr2	+	1190	4	FSM	ENSMUSG00000078875.11	ENSMUST00000156844.8	752	4	-17	-421	4	-50	multi-exon	FALSE	canonical	3	46	junction_2	49.7482551341139	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTGTGAGTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	176692752	176702727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806
ENSMUSG00000078877.12_1	chr2	+	5439	5	NIC	ENSMUSG00000078877.12	novel	2505	4	NA	NA	10	2785	combination_of_known_junctions	FALSE	canonical	3	47	junction_2	16.6038399173203	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	176490414	176505801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487_176499549_176500702
ENSMUSG00000078877.12_2	chr2	+	1290	4	FSM	ENSMUSG00000078877.12	ENSMUST00000118012.9	1213	4	7	-84	7	84	multi-exon	FALSE	canonical	3	47	junction_2	11.7284080571728	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGTTCCCATTTCATA	NA	False	NA	NA	False	NA	NA	NA	176490411	176500495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487
ENSMUSG00000078878.10_3	chr2	+	4439	5	FSM	ENSMUSG00000078878.10	ENSMUST00000108981.9	1646	5	-8	-2785	-8	2785	multi-exon	FALSE	canonical	3	21	junction_2	64.6006965906715	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	176400112	176416391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081_176411143_176412300
ENSMUSG00000078878.10_7	chr2	+	4407	5	NIC	ENSMUSG00000078878.10	novel	1646	5	NA	NA	-4	2785	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	69.003623093284	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	176400116	176416391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_176400190_176403673_176403729_176410749_176410877_176411081_176411143_176412300
ENSMUSG00000078878.10_8	chr2	+	1374	4	FSM	ENSMUSG00000078878.10	ENSMUST00000108980.9	1167	4	-19	-188	8	188	multi-exon	FALSE	canonical	3	21	junction_2	71.7696933871734	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTAGATTGCTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	176400128	176412184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081
ENSMUSG00000078879.11_0	chr2	+	997	7	Fusion	ENSMUSG00000078877.12_ENSMUSG00000078878.10_ENSMUSG00000078879.11	novel	1646	5	NA	NA	-330623	187473	multi-exon	TRUE	non_canonical	0	0	junction_1	7.01585505994973	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGCTTTGATGCATTCCA	NA	False	NA	NA	False	NA	NA	NA	176031691	176690489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_176031801_176365748_176365791_176370328_176370456_176370661_176370723_176412300_176412609_176501682_176501709_176690165
ENSMUSG00000078879.11_1	chr2	+	6604	4	FSM	ENSMUSG00000078879.11	ENSMUST00000108985.9	1295	4	1	-5310	1	5310	multi-exon	FALSE	canonical	3	5	junction_3	41.4085337420521	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	176362355	176378193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_176362453_176370328_176370456_176370661_176370723_176371874
ENSMUSG00000078879.11_3	chr2	+	7758	3	FSM	ENSMUSG00000078879.11	ENSMUST00000121956.8	1271	3	41	-6528	1	5312	multi-exon	FALSE	canonical	3	19	junction_2	40	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	176362355	176378195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_176362453_176370328_176370456_176370661
ENSMUSG00000078879.11_9	chr2	+	6260	6	NNC	ENSMUSG00000078879.11	novel	1295	4	NA	NA	-9	5310	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	37.8449468225284	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	176362363	176378193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_176362453_176370328_176370456_176370661_176370723_176371874_176372050_176372133_176372539_176372790
ENSMUSG00000078880.11_10	chr2	-	1413	4	FSM	ENSMUSG00000078880.11	ENSMUST00000119149.8	1458	4	-26	71	-25	-71	multi-exon	FALSE	canonical	3	26	junction_2	105.749179140497	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATTAGATTGCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	176328162	176316057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_176317159_176317363_176317491_176324514_176324570_176328032
ENSMUSG00000078880.11_3	chr2	-	4441	5	FSM	ENSMUSG00000078880.11	ENSMUST00000108990.9	1628	5	-28	-2785	-2	2785	multi-exon	FALSE	canonical	2	5	junction_1	103.562481140614	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	176328139	176311849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_176315941_176317097_176317159_176317363_176317491_176324514_176324570_176328032
ENSMUSG00000078880.11_5	chr2	-	4336	4	ISM	ENSMUSG00000078880.11	ENSMUST00000108990.9	1628	5	3541	-2786	3541	2786	3prime_fragment	FALSE	canonical	2	5	junction_1	117.927473003066	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	176324570	176311848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_176315941_176317097_176317159_176317363_176317491_176324514
ENSMUSG00000078880.11_7	chr2	-	4293	5	NNC	ENSMUSG00000078880.11	novel	1628	5	NA	NA	3541	2786	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.70456178496	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	176324570	176311848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176314593_176314635_176315941_176317097_176317159_176317363_176317491_176324514
ENSMUSG00000078880.11_8	chr2	-	4546	6	NNC	ENSMUSG00000078880.11	novel	1628	5	NA	NA	-6	2784	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	97.8823783936618	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTTGCTTCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	176328143	176311850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176315941_176317097_176317159_176317363_176317491_176323107_176323210_176324514_176324570_176328032
ENSMUSG00000078881.11_0	chr2	-	4439	5	NIC	ENSMUSG00000078881.11	novel	1458	4	NA	NA	0	2786	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	106.190865897214	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	176178566	176162284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_176166377_176167533_176167595_176167799_176167927_176174950_176175006_176178462
ENSMUSG00000078881.11_1	chr2	-	4381	4	NIC	ENSMUSG00000078881.11	novel	1497	4	NA	NA	3	2786	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	125.158566093842	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	176178563	176162284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_176166377_176167533_176167595_176167799_176167927_176178462
ENSMUSG00000078881.11_11	chr2	-	4051	5	NIC	ENSMUSG00000078881.11	novel	1497	4	NA	NA	-18	2398	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	112.962383119338	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGATGTGTTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	176178594	176162672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_176166377_176167533_176167595_176167799_176167927_176174950_176175006_176178490
ENSMUSG00000078881.11_2	chr2	-	4335	4	FSM	ENSMUSG00000078881.11	ENSMUST00000122097.9	1497	4	-53	-2785	-53	2785	multi-exon	FALSE	canonical	2	5	junction_1	120.748590974066	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	176175006	176162285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_176166377_176167533_176167595_176167799_176167927_176174950
ENSMUSG00000078881.11_3	chr2	-	4555	6	NNC	ENSMUSG00000078881.11	novel	1497	4	NA	NA	-6	2784	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	100.169855745129	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTTGCTTCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	176178582	176162286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176166377_176167533_176167595_176167799_176167927_176173543_176173646_176174950_176175006_176178462
ENSMUSG00000078881.11_4	chr2	-	1379	4	FSM	ENSMUSG00000078881.11	ENSMUST00000120959.8	1458	4	4	75	4	-75	multi-exon	FALSE	canonical	3	26	junction_2	108.739239569818	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTAACATTAGATTGCTC	NA	False	NA	NA	False	NA	NA	NA	176178562	176166497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_176167595_176167799_176167927_176174950_176175006_176178462
ENSMUSG00000078881.11_5	chr2	-	4293	5	NNC	ENSMUSG00000078881.11	novel	1497	4	NA	NA	-53	2786	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.292762346056	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	176175006	176162284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176165029_176165071_176166377_176167533_176167595_176167799_176167927_176174950
ENSMUSG00000078881.11_7	chr2	-	1090	3	ISM	ENSMUSG00000078881.11	ENSMUST00000122097.9	1497	4	-48	1612	-48	-260	5prime_fragment	FALSE	canonical	3	26	junction_2	122.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTGTGCAAACACTGT	NA	False	NA	NA	False	NA	NA	NA	176175001	176166682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_176167595_176167799_176167927_176174950
ENSMUSG00000078886.13_0	chr2	+	4376	4	Fusion	ENSMUSG00000078886.13_ENSMUSG00000078887.11	novel	1445	4	NA	NA	-1	1306	multi-exon	FALSE	canonical	1	8	junction_1	122.246563232764	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	175661077	175773402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_175661175_175767761_175767889_175768093_175768155_175769311
ENSMUSG00000078886.13_2	chr2	+	1286	4	FSM	ENSMUSG00000078886.13	ENSMUST00000109007.8	1621	4	6	329	6	-329	multi-exon	FALSE	canonical	3	28	junction_2	114.545478595476	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAATACTGTTCCCATTT	NA	False	NA	NA	False	NA	NA	NA	175757129	175769099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_175757228_175760682_175760738_175767761_175767889_175768093
ENSMUSG00000078886.13_8	chr2	+	3198	3	ISM	ENSMUSG00000078886.13	ENSMUST00000109008.4	1497	4	6800	-1477	6800	-2	3prime_fragment	FALSE	canonical	3	48	junction_2	118.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGTGTAGGAGCTTGGA	NA	False	NA	NA	False	NA	NA	NA	175767534	175772094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_175767889_175768093_175768155_175769311
ENSMUSG00000078887.11_11	chr2	+	6318	3	NIC	ENSMUSG00000078887.11	novel	1445	4	NA	NA	8	-177	intron_retention	FALSE	canonical	3	82	junction_1	81.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTGTGAGTTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	175661086	175671272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_175661175_175664841_175670149_175670349
ENSMUSG00000078887.11_3	chr2	+	4599	5	NIC	ENSMUSG00000078887.11	novel	599	6	NA	NA	-2	2784	combination_of_known_junctions	FALSE	canonical	3	44	junction_4	79.6649232724164	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	175661076	175675825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349_175670411_175671567
ENSMUSG00000078887.11_5	chr2	+	1377	4	FSM	ENSMUSG00000078887.11	ENSMUST00000109011.8	1445	4	65	3	-2	-3	multi-exon	FALSE	canonical	3	65	junction_2	81.1432204329001	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTAACATTAGATTGCTC	NA	False	NA	NA	False	NA	NA	NA	175661076	175671446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349
ENSMUSG00000078889.12_2	chr2	-	6117	4	FSM	ENSMUSG00000078889.12	ENSMUST00000123863.2	267	4	-109	-5741	23	3855	multi-exon	FALSE	canonical	3	11	junction_1	42.523196284172	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	175592863	175577294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175583112_175584264_175584326_175584530_175584658_175592751
ENSMUSG00000078889.12_4	chr2	-	1212	3	FSM	ENSMUSG00000078889.12	ENSMUST00000109020.9	3438	3	31	2195	31	-309	multi-exon	FALSE	canonical	3	24	junction_1	41.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCTATAAATGTGAGCCAG	NA	False	NA	NA	False	NA	NA	NA	175592855	175583344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175584326_175584530_175584658_175592751
ENSMUSG00000078894.10_1	chr2	+	3792	5	FSM	ENSMUSG00000078894.10	ENSMUST00000099009.9	3823	5	29	2	25	-2	multi-exon	FALSE	canonical	3	13	junction_2	24.8432586429397	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAAGGTGGGATAG	3064	False	NA	NA	False	AATAAA	-23	NA	175968390	175982119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_175968480_175971917_175971973_175977111_175977239_175977443_175977505_175978659
ENSMUSG00000078894.10_2	chr2	+	3780	5	NNC	ENSMUSG00000078894.10	novel	3823	5	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	28.0846933399672	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	3050	False	NA	NA	False	AATAAA	-25	NA	175968376	175982121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_175968452_175971917_175971973_175977111_175977239_175977443_175977505_175978659
ENSMUSG00000078894.10_6	chr2	+	1950	1	ISM	ENSMUSG00000078894.10	ENSMUST00000099009.9	3823	5	11810	0	1519	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	NA	False	NA	NA	False	AATAAA	-25	NA	175980171	175982121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_175980200_175982100
ENSMUSG00000078896.12_3	chr2	+	6612	4	FSM	ENSMUSG00000078896.12	ENSMUST00000109002.9	957	4	-45	-5610	33	3692	multi-exon	FALSE	canonical	3	5	junction_3	41.8170619085878	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	175311810	175327656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_175311916_175319791_175319919_175320124_175320186_175321337
ENSMUSG00000078896.12_4	chr2	+	6260	6	NNC	ENSMUSG00000078896.12	novel	957	4	NA	NA	-29	3692	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	37.3598715201217	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	175311826	175327656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_175311916_175319791_175319919_175320124_175320186_175321337_175321513_175321596_175322002_175322253
ENSMUSG00000078896.12_5	chr2	+	7758	3	FSM	ENSMUSG00000078896.12	ENSMUST00000109042.10	1271	3	41	-6528	-37	3694	multi-exon	FALSE	canonical	3	12	junction_2	42.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	175311818	175327658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_175311916_175319791_175319919_175320124
ENSMUSG00000078897.11_0	chr2	-	4546	6	NIC	ENSMUSG00000078897.11	novel	1659	5	NA	NA	0	2785	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	98.2221970839586	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	175277600	175261307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_175265399_175266555_175266617_175266821_175266949_175272565_175272668_175273972_175274028_175277490
ENSMUSG00000078897.11_1	chr2	-	4293	5	NNC	ENSMUSG00000078897.11	novel	1659	5	NA	NA	-53	2786	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.664676599182	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175274028	175261306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_175264051_175264093_175265399_175266555_175266617_175266821_175266949_175273972
ENSMUSG00000078897.11_3	chr2	-	4446	5	FSM	ENSMUSG00000078897.11	ENSMUST00000109045.9	1659	5	-1	-2786	-1	2786	multi-exon	FALSE	canonical	2	6	junction_1	104.72911486306	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175277601	175261306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175265399_175266555_175266617_175266821_175266949_175273972_175274028_175277490
ENSMUSG00000078897.11_5	chr2	-	4336	4	FSM	ENSMUSG00000078897.11	ENSMUST00000109046.10	1497	4	-53	-2786	-53	2786	multi-exon	FALSE	canonical	2	6	junction_1	119.402214757051	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175274028	175261306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175265399_175266555_175266617_175266821_175266949_175273972
ENSMUSG00000078897.11_7	chr2	-	1432	4	FSM	ENSMUSG00000078897.11	ENSMUST00000152941.2	1198	4	-15	-219	3	219	multi-exon	FALSE	canonical	3	20	junction_2	107.953693776545	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGATAAAAAGACTCATCA	NA	False	NA	NA	False	NA	NA	NA	175277590	175265466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175266617_175266821_175266949_175273972_175274028_175277490
ENSMUSG00000078898.10_1	chr2	+	422	3	Fusion	ENSMUSG00000078898.10_ENSMUSG00000078901.9	novel	3382	3	NA	NA	-10	-801	multi-exon	FALSE	canonical	3	17	junction_2	20	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCAGATATGTAATTATT	NA	False	NA	NA	False	NA	NA	NA	175116907	175222778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_175116997_175222239_175222367_175222572
ENSMUSG00000078898.10_2	chr2	+	6511	4	FSM	ENSMUSG00000078898.10	ENSMUST00000109047.3	1480	4	-4	-5027	-4	4029	multi-exon	FALSE	canonical	3	11	junction_3	13.8884444373331	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	175214280	175230023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_175214367_175222239_175222367_175222572_175222634_175223786
ENSMUSG00000078899.10_13	chr2	-	4293	5	NNC	ENSMUSG00000078899.10	novel	4402	5	NA	NA	3519	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.715072195337	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175176471	175163749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_175166494_175166536_175167842_175168998_175169060_175169264_175169392_175176415
ENSMUSG00000078899.10_14	chr2	-	3858	1	ISM	ENSMUSG00000078899.10	ENSMUST00000121393.9	4402	5	12383	2	1784	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	8240	False	NA	NA	False	NA	NA	NA	175167607	175163749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_175163700_175167600
ENSMUSG00000078899.10_2	chr2	-	3426	7	Fusion	ENSMUSG00000078905.9_ENSMUSG00000078899.10	novel	4402	5	NA	NA	3544	2726	multi-exon	TRUE	non_canonical	0	0	junction_1	98.296179421628	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACTTGCTTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	175176446	174900615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_-_174903533_174946250_174946293_175010745_175010860_175167707_175167842_175168998_175169060_175169264_175169392_175176415
ENSMUSG00000078899.10_28	chr2	-	1403	4	ISM	ENSMUSG00000078899.10	ENSMUST00000121393.9	4402	5	-56	4212	-56	-1424	5prime_fragment	FALSE	canonical	3	21	junction_2	108.76988962433	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACATTAGATTGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	175180046	175167959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_175169060_175169264_175169392_175176415_175176471_175179925
ENSMUSG00000078899.10_3	chr2	-	3365	6	Fusion	ENSMUSG00000078905.9_ENSMUSG00000078899.10	novel	4402	5	NA	NA	3544	2726	multi-exon	FALSE	non_canonical	0	0	junction_1	8.4	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACTTGCTTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	175176446	174900615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_-_174903533_174946250_174946293_175010745_175010860_175167707_175167842_175169264_175169392_175176415
ENSMUSG00000078899.10_6	chr2	-	4548	6	NNC	ENSMUSG00000078899.10	novel	4402	5	NA	NA	-46	-2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	99.3124362806592	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175180036	175163749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_175167842_175168998_175169060_175169264_175169392_175175008_175175111_175176415_175176471_175179925
ENSMUSG00000078899.10_7	chr2	-	4456	5	FSM	ENSMUSG00000078899.10	ENSMUST00000121393.9	4402	5	-56	2	-56	-2	multi-exon	FALSE	canonical	2	4	junction_1	105.8828952192	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175180046	175163749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175167842_175168998_175169060_175169264_175169392_175176415_175176471_175179925
ENSMUSG00000078901.9_1	chr2	+	1215	3	FSM	ENSMUSG00000078901.9	ENSMUST00000109051.8	3382	3	-39	2206	-39	905	multi-exon	FALSE	canonical	3	19	junction_2	45	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAAAAAGTATGCTATAA	NA	False	NA	NA	False	NA	NA	NA	175116878	175126392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_175116997_175125090_175125218_175125422
ENSMUSG00000078901.9_2	chr2	+	6116	4	NNC	ENSMUSG00000078901.9	novel	3382	3	NA	NA	-32	3855	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	44.4322205412044	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	175116885	175132453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_175116997_175125090_175125218_175125422_175125484_175126636
ENSMUSG00000078902.4_1	chr2	-	4488	4	FSM	ENSMUSG00000078902.4	ENSMUST00000109054.3	4516	4	24	4	24	-4	multi-exon	FALSE	canonical	3	92	junction_1	16.3571255285137	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTTGCTTCTTGGTCAT	NA	False	NA	-8	True	NA	NA	NA	175017640	175008051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175012254_175013387_175013449_175013640_175013768_175017542
ENSMUSG00000078902.4_3	chr2	-	3426	1	NIC	ENSMUSG00000078902.4	novel	1436	3	NA	NA	2633	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTTGCTTCTTGGTCAT	NA	False	NA	-8	True	NA	NA	NA	175011477	175008051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_175008100_175011500
ENSMUSG00000078902.4_6	chr2	-	5632	3	NIC	ENSMUSG00000078902.4	novel	4516	4	NA	NA	14	-4	intron_retention	FALSE	canonical	3	122	junction_2	4	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTTGCTTCTTGGTCAT	NA	False	NA	-8	True	NA	NA	NA	175017650	175008051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_175013449_175013640_175013768_175017542
ENSMUSG00000078903.11_25	chr2	-	1375	4	FSM	ENSMUSG00000078903.11	ENSMUST00000109055.2	965	4	27	-437	4	437	multi-exon	FALSE	canonical	3	66	junction_2	81.8141525382715	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATTAGATTGCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	175048665	175038297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175039399_175039599_175039727_175044851_175044907_175048573
ENSMUSG00000078903.11_7	chr2	-	4602	5	FSM	ENSMUSG00000078903.11	ENSMUST00000109058.9	1854	5	37	-2785	-4	-1064	multi-exon	FALSE	canonical	3	35	junction_1	82.2936814099357	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175048673	175033921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175044851_175044907_175048573
ENSMUSG00000078903.11_8	chr2	-	4700	6	FSM	ENSMUSG00000078903.11	ENSMUST00000109056.8	1956	6	41	-2785	0	-1064	multi-exon	FALSE	canonical	3	9	junction_4	88.9246872358852	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175048669	175033921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175043445_175043548_175044851_175044907_175048573
ENSMUSG00000078905.9_2	chr2	-	3461	4	FSM	ENSMUSG00000078905.9	ENSMUST00000072895.10	625	4	-14	-2822	4	2822	multi-exon	FALSE	canonical	3	40	junction_2	18.263503375737	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAGAAATGAAGAAATA	NA	False	NA	NA	False	AAAAAG	-10	NA	174909570	174900519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_174903715_174905392_174905454_174905660_174905788_174909492
ENSMUSG00000078905.9_3	chr2	-	3704	4	Fusion	ENSMUSG00000078905.9_ENSMUSG00000081949.4	novel	625	4	NA	NA	-107	3033	multi-exon	FALSE	canonical	2	11	junction_3	30.0111090542597	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGGGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	174951915	174900308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_-_174903715_174905392_174905454_174905660_174905788_174951805
ENSMUSG00000078905.9_6	chr2	-	1915	3	FSM	ENSMUSG00000078905.9	ENSMUST00000109066.2	564	3	4	-1355	4	-402	multi-exon	FALSE	canonical	3	40	junction_1	14.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTCACGTGTGCAAATTT	NA	False	NA	NA	False	NA	NA	NA	174909570	174903743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_174905454_174905660_174905788_174909492
ENSMUSG00000078906.10_14	chr2	+	1332	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-92	1182	-14	454	5prime_fragment	FALSE	canonical	3	436	junction_1	382.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCAAATTTTAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	174852019	174859859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_174852115_174858430_174858558_174858749
ENSMUSG00000078906.10_15	chr2	+	1368	4	FSM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	5	-454	5	454	multi-exon	FALSE	canonical	3	233	junction_1	395.454450249611	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCAAATTTTAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	174852038	174859859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749
ENSMUSG00000078906.10_16	chr2	+	3205	4	FSM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-92	-1832	-14	1832	multi-exon	FALSE	canonical	3	436	junction_1	343.521307765456	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATATTAAAAAAAAAAGACAA	NA	False	NA	-13	True	NA	NA	NA	174852019	174862873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_174852115_174858430_174858558_174858749_174858811_174859951
ENSMUSG00000078906.10_24	chr2	+	3256	5	NIC	ENSMUSG00000078906.10	novel	1281	4	NA	NA	-13	1829	combination_of_known_junctions	FALSE	canonical	3	233	junction_1	354.600743795046	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGTATATTAAAAAAAAAAGA	NA	False	NA	-16	True	NA	NA	NA	174852020	174862870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749_174858811_174859951
ENSMUSG00000078906.10_28	chr2	+	1389	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	3090	-454	3012	454	3prime_fragment	FALSE	canonical	3	748	junction_1	226.5	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCAAATTTTAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	174855123	174859859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_174855276_174858430_174858558_174858749
ENSMUSG00000078906.10_29	chr2	+	451	4	NIC	ENSMUSG00000078906.10	novel	919	4	NA	NA	3016	661	combination_of_known_junctions	FALSE	canonical	3	515	junction_3	284.818460700067	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGACTGTAACCAATGTGG	NA	False	NA	NA	False	NA	NA	NA	174855127	174860066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_174855276_174858430_174858558_174858749_174858811_174859951
ENSMUSG00000078906.10_3	chr2	+	1326	3	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-5483	454	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	600.5	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCAAATTTTAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	174846550	174859859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_174846640_174858430_174858558_174858749
ENSMUSG00000078906.10_35	chr2	+	1962	2	ISM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	5672	-454	5594	454	3prime_fragment	FALSE	canonical	3	1201	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCAAATTTTAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	174857705	174859859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_174858558_174858749
ENSMUSG00000078908.11_0	chr8	+	4836	6	FSM	ENSMUSG00000078908.11	ENSMUST00000179926.9	3470	6	1	-1367	1	-6	multi-exon	FALSE	canonical	3	24	junction_1	7.91454357496375	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTACCCTCTCAGCCTCT	NA	False	NA	14	True	AATAAA	-15	NA	114362219	114371805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_114362341_114362743_114362902_114364372_114364718_114365166_114365987_114366318_114366467_114368561
ENSMUSG00000078908.11_1	chr8	+	4993	5	FSM	ENSMUSG00000078908.11	ENSMUST00000035777.10	4998	5	-14	19	-14	-19	multi-exon	FALSE	canonical	3	34	junction_3	4.52769256906871	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATATGGGGGAACTTAC	NA	False	NA	1	True	AATAAA	-2	NA	114362452	114371792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_114362902_114364372_114364718_114365166_114365987_114366318_114366467_114368561
ENSMUSG00000078908.11_8	chr8	+	3563	3	ISM	ENSMUSG00000078908.11	ENSMUST00000035777.10	4998	5	3336	19	3336	-19	3prime_fragment	FALSE	canonical	3	34	junction_1	3	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATATGGGGGAACTTAC	NA	False	NA	1	True	AATAAA	-2	NA	114365802	114371792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_114365987_114366318_114366467_114368561
ENSMUSG00000078908.11_9	chr8	+	2683	1	ISM	ENSMUSG00000078908.11	ENSMUST00000035777.10	4998	5	6661	1	6661	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCTCAGCCTCTTTTCT	NA	False	NA	19	True	AATAAA	-20	NA	114369127	114371810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_114369100_114371800
ENSMUSG00000078915.3_0	chr13	-	814	1	FSM	ENSMUSG00000078915.3	ENSMUST00000109187.3	630	1	-57	-127	-57	127	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	45232660	45231846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_45231800_45232700
ENSMUSG00000078919.11_0	chr2	-	1033	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	19	1241	2	-7	multi-exon	FALSE	canonical	3	450	junction_3	8.66656650583148	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAAAATGTTGCTGCTTT	NA	False	NA	-27	True	AATAAA	-15	NA	168072280	168052208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000078919.11_3	chr2	-	840	9	FSM	ENSMUSG00000078919.11	ENSMUST00000109193.8	1076	9	1	235	1	0	multi-exon	FALSE	canonical	2	8	junction_8	149.583118616373	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTCCCGTGTTCATTTC	NA	False	NA	-14	True	CATAAA	-16	NA	168072510	168052435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072308
ENSMUSG00000078923.11_0	chr2	-	1716	4	FSM	ENSMUSG00000078923.11	ENSMUST00000109207.10	2041	4	116	209	0	-3	multi-exon	FALSE	canonical	3	2167	junction_3	78.0555357848927	2304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTCGGTGGTTTTATTT	9434	False	NA	NA	False	AATAAA	-19	NA	167473899	167449766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167473859
ENSMUSG00000078923.11_3	chr2	-	1834	5	FSM	ENSMUSG00000078923.11	ENSMUST00000151365.8	924	5	9	-919	1	-3	multi-exon	FALSE	canonical	3	48	junction_4	1117.10764924424	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTCGGTGGTTTTATTT	9435	False	NA	NA	False	AATAAA	-19	NA	167473898	167449766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167471089_167471209_167473859
ENSMUSG00000078931.5_1	chr8	-	1523	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	4	-221	4	221	multi-exon	FALSE	canonical	3	275	junction_1	0	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACAAAGCTTCTACTG	NA	False	NA	NA	False	NA	NA	NA	107775242	107772930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107773904_107774692
ENSMUSG00000078932.9_1	chr15	+	2768	13	FSM	ENSMUSG00000078932.9	ENSMUST00000190436.7	2041	13	-10	-717	-10	717	multi-exon	FALSE	canonical	2	14	junction_9	6.39172642301489	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATTTCTCTTGATAAT	NA	False	NA	NA	False	ATTAAA	-13	NA	91083686	91145814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_91083802_91115782_91115823_91119943_91120083_91123134_91123268_91123620_91123670_91124845_91125023_91126772_91126889_91129815_91130334_91131061_91131132_91132717_91132779_91137065_91137130_91141563_91141647_91144611
ENSMUSG00000078932.9_12	chr15	+	2752	2	ISM	ENSMUSG00000078932.9	ENSMUST00000109284.3	1929	12	24317	-726	24317	717	3prime_fragment	FALSE	canonical	2	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATTTCTCTTGATAAT	NA	False	NA	NA	False	ATTAAA	-13	NA	91140097	91145814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_91141647_91144611
ENSMUSG00000078932.9_5	chr15	+	2589	12	NIC	ENSMUSG00000078932.9	novel	2041	13	NA	NA	-10	715	combination_of_known_splicesites	FALSE	canonical	2	5	junction_5	8.52221210564216	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTTATTTCTCTTGATA	NA	False	NA	NA	False	ATTAAA	-11	NA	91083686	91145812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_91083802_91115782_91115823_91119943_91120083_91123134_91123268_91123620_91123670_91126772_91126889_91129815_91130334_91131061_91131132_91132717_91132779_91137065_91137130_91141563_91141647_91144611
ENSMUSG00000078932.9_9	chr15	+	2292	8	ISM	ENSMUSG00000078932.9	ENSMUST00000109284.3	1929	12	9065	-726	9065	717	3prime_fragment	FALSE	canonical	2	14	junction_4	3.65892813567591	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATTTCTCTTGATAAT	NA	False	NA	NA	False	ATTAAA	-13	NA	91124845	91145814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_91125023_91126772_91126889_91129815_91130334_91131061_91131132_91132717_91132779_91137065_91137130_91141563_91141647_91144611
ENSMUSG00000078937.9_0	chr15	-	2682	19	FSM	ENSMUSG00000078937.9	ENSMUST00000109313.9	2895	19	-4	217	-4	-217	multi-exon	FALSE	canonical	3	54	junction_15	11.4655953418569	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGGCTGTTAGGTGCCTA	5212	False	NA	NA	False	AATAAA	-21	NA	89310070	89300824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_89301183_89301347_89301441_89302034_89302149_89302934_89303088_89303178_89303314_89303393_89303559_89304094_89304212_89304290_89304397_89304894_89305081_89305547_89305744_89306327_89306413_89306491_89306600_89307694_89307773_89307858_89307997_89308142_89308245_89308467_89308646_89308919_89309060_89309390_89309551_89310000
ENSMUSG00000078937.9_8	chr15	-	2612	18	ISM	ENSMUSG00000078937.9	ENSMUST00000109313.9	2895	19	516	217	448	-217	3prime_fragment	FALSE	canonical	3	54	junction_15	11.6440875592081	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGGCTGTTAGGTGCCTA	5732	False	NA	NA	False	AATAAA	-21	NA	89309550	89300824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89301183_89301347_89301441_89302034_89302149_89302934_89303088_89303178_89303314_89303393_89303559_89304094_89304212_89304290_89304397_89304894_89305081_89305547_89305744_89306327_89306413_89306491_89306600_89307694_89307773_89307858_89307997_89308142_89308245_89308467_89308646_89308919_89309060_89309390
ENSMUSG00000078941.10_1	chr13	+	1192	3	FSM	ENSMUSG00000078941.10	ENSMUST00000190729.2	1184	3	-8	0	-8	0	multi-exon	FALSE	canonical	3	1279	junction_2	251.5	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTACTTTGGCAG	NA	False	NA	NA	False	AATAAA	-19	NA	100787879	100792566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_100787954_100790698_100790792_100791541
ENSMUSG00000078941.10_14	chr13	+	1231	3	FSM	ENSMUSG00000052293.15	ENSMUST00000167256.8	1230	3	-1	0	-1	0	multi-exon	FALSE	canonical	3	171	junction_1	554	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGTACTTTGGCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	100788113	100792567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_100788226_100790698_100790792_100791541
ENSMUSG00000078941.10_4	chr13	+	905	5	FSM	ENSMUSG00000078941.10	ENSMUST00000022135.15	1298	5	392	1	-9	-1	multi-exon	FALSE	canonical	3	650	junction_4	426.823734110464	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACATCTCTTTAATAGT	NA	False	NA	36	True	AATAAA	-13	NA	100787878	100802866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_100787954_100790698_100790792_100800402_100800462_100800558_100800705_100802334
ENSMUSG00000078952.10_0	chr13	+	3286	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	50	-3	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATTGCGAACTCAAGAC	NA	False	NA	18	True	AATAAA	-15	NA	97619258	97633512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
ENSMUSG00000078952.10_2	chr13	+	2629	2	NIC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	49	-2	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTGCGAACTCAAGACC	NA	False	NA	19	True	AATAAA	-16	NA	97619257	97633513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_97619286_97630912
ENSMUSG00000078952.10_3	chr13	+	2791	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	51	-2	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_3	70.6745278646337	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTGCGAACTCAAGACC	NA	False	NA	19	True	AATAAA	-16	NA	97619259	97633513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_97619286_97619456_97619541_97629663_97629744_97630912
ENSMUSG00000078952.10_38	chr13	+	2818	2	NNC	ENSMUSG00000078952.10	novel	2726	2	NA	NA	10559	-2	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTGCGAACTCAAGACC	NA	False	NA	19	True	AATAAA	-16	NA	97630021	97633513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_97630239_97630912
ENSMUSG00000078952.10_4	chr13	+	2711	3	FSM	ENSMUSG00000078952.10	ENSMUST00000179324.2	2764	3	51	2	51	-2	multi-exon	FALSE	canonical	3	54	junction_2	70.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTGCGAACTCAAGACC	NA	False	NA	19	True	AATAAA	-16	NA	97619259	97633513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_97619286_97619456_97619541_97630912
ENSMUSG00000078952.10_42	chr13	+	2129	1	ISM	ENSMUSG00000078952.10	ENSMUST00000109431.10	2726	2	59907	2	11922	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTGCGAACTCAAGACC	NA	False	NA	19	True	AATAAA	-16	NA	97631384	97633513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_97631400_97633500
ENSMUSG00000078952.10_7	chr13	+	3200	3	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	51	-4	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	71.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATATTGCGAACTCAAGA	NA	False	NA	17	True	AATAAA	-14	NA	97619259	97633511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_97619286_97629663_97630239_97630912
ENSMUSG00000078954.10_0	chr15	+	3740	8	NIC	ENSMUSG00000078954.10	novel	1544	12	NA	NA	8	1357	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	88.0401114520523	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAGCACCAGATATGT	NA	False	NA	NA	False	AATAAA	-18	NA	84604260	84644458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_84604309_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84641422
ENSMUSG00000078954.10_1	chr15	+	1498	12	NIC	ENSMUSG00000078954.10	novel	1544	12	NA	NA	-8	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	58.989143138924	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	NA	False	NA	9	True	ATTAAA	-16	NA	84604275	84656405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_84604309_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUSG00000078954.10_14	chr15	+	1464	11	FSM	ENSMUSG00000078954.10	ENSMUST00000168811.2	1464	11	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_5	23.8748821986623	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	1022	False	NA	9	True	ATTAAA	-16	NA	84617092	84656405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUSG00000078954.10_4	chr15	+	1493	12	NIC	ENSMUSG00000078954.10	novel	1527	13	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	58.989143138924	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	NA	False	NA	9	True	ATTAAA	-16	NA	84604275	84656405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_84604309_84617096_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUSG00000078954.10_7	chr15	+	1632	13	NNC	ENSMUSG00000078954.10	novel	1527	13	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	72.9552754927443	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	NA	False	NA	9	True	ATTAAA	-16	NA	84604275	84656405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_84604309_84604580_84604715_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUSG00000078954.10_9	chr15	+	1492	12	FSM	ENSMUSG00000078954.10	ENSMUST00000172307.9	1544	12	49	3	18	0	multi-exon	FALSE	non_canonical	0	0	junction_1	58.989143138924	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	NA	False	NA	9	True	ATTAAA	-16	NA	84604301	84656405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_84604329_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUSG00000078955.4_0	chr2	+	2112	2	FSM	ENSMUSG00000078955.4	ENSMUST00000128681.2	575	2	43	-1580	43	1580	multi-exon	FALSE	canonical	3	10	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTAATGTTGTAATGTA	NA	False	NA	NA	False	NA	NA	NA	160425319	160428691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_160425531_160426790
ENSMUSG00000078956.4_3	chr2	-	933	2	NNC	ENSMUSG00000078956.4	novel	340	3	NA	NA	-36259	768	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCATTTTTGAAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	160498150	160409530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_160410363_160498049
ENSMUSG00000078963.4_1	chr18	-	1099	4	FSM	ENSMUSG00000078963.4	ENSMUST00000237192.2	1104	4	5	0	5	0	multi-exon	FALSE	canonical	0	0	junction_2	16.9901932498329	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACCTTATGTGTATG	NA	False	NA	NA	False	AATACA	-14	NA	80280043	80272972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_80273777_80276629_80276725_80278663_80278731_80279910
ENSMUSG00000078965.6_0	chr11	-	1251	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-71	-178	-71	178	mono-exon	FALSE	NA	NA	NA	NA	NA	1734	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4390	False	NA	NA	False	AATAAA	-14	NA	20286084	20284833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_20284800_20286100
ENSMUSG00000078970.6_0	chr11	+	2000	8	FSM	ENSMUSG00000078970.6	ENSMUST00000046955.7	2002	8	2	0	2	0	multi-exon	FALSE	canonical	3	217	junction_1	21.86601127274	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTGGAGGCGTTGA	2473	False	NA	8	True	AATAAA	-10	NA	17161919	17183796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_17162147_17169013_17169115_17172196_17172328_17174548_17174651_17177160_17177277_17178140_17178276_17179768_17179867_17182706
ENSMUSG00000078970.6_13	chr11	+	955	1	ISM	ENSMUSG00000078970.6	ENSMUST00000046955.7	2002	8	20924	0	20924	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTGGAGGCGTTGA	NA	False	NA	8	True	AATAAA	-10	NA	17182841	17183796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_17182800_17183800
ENSMUSG00000078974.11_0	chr11	-	405	4	FSM	ENSMUSG00000078974.11	ENSMUST00000166950.8	754	4	328	21	10	-8	multi-exon	FALSE	canonical	3	4864	junction_3	651.205207459386	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTTTTTCCATAACAG	NA	False	NA	-59	True	ATTAAA	-14	NA	16458156	16451658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458103
ENSMUSG00000078974.11_3	chr11	-	403	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109642.8	691	4	11	277	11	-13	multi-exon	FALSE	canonical	3	167	junction_3	2857.39815605425	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAACACTTTTTCCAT	NA	False	NA	-64	True	ATTAAA	-9	NA	16458155	16451663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458099
ENSMUSG00000078994.10_0	chr13	-	1723	4	FSM	ENSMUSG00000078994.10	ENSMUST00000109732.3	2056	4	27	306	3	-301	multi-exon	FALSE	canonical	2	4	junction_3	14.7196014438797	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCTAGAGACTTGTTCC	5278	False	NA	NA	False	NA	NA	NA	67547859	67537728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67539184_67544162_67544259_67544748_67544876_67547814
ENSMUSG00000078994.10_3	chr13	-	1702	4	FSM	ENSMUSG00000078994.10	ENSMUST00000224825.2	379	4	15	-1338	15	-308	multi-exon	TRUE	canonical	1	2	junction_3	15.4128373622625	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATGAGCTTCTAGAGAC	5214	False	NA	NA	False	NA	NA	NA	67547923	67537735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67539184_67544162_67544259_67544748_67544876_67547892
ENSMUSG00000078995.11_0	chr13	-	4114	4	NIC	ENSMUSG00000078995.11	novel	4126	4	NA	NA	-40	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	11.323525167642	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGGAAATGGGGCCTTAT	2285	False	NA	NA	False	NA	NA	NA	67523872	67511701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_67515485_67520295_67520392_67520869_67520997_67523764
ENSMUSG00000078995.11_2	chr13	-	1910	4	FSM	ENSMUSG00000078995.11	ENSMUST00000057070.9	4126	4	28	2188	28	-2188	multi-exon	FALSE	canonical	2	8	junction_1	8.33999733546453	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTATCTGCATTGGTTC	2256	False	NA	NA	False	GATAAA	-22	NA	67523901	67513890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67515485_67520295_67520392_67520869_67520997_67523808
ENSMUSG00000079003.4_2	chr8	+	2113	5	FSM	ENSMUSG00000079003.4	ENSMUST00000095228.5	2265	5	148	4	148	-4	multi-exon	FALSE	canonical	3	513	junction_1	22.3941956765587	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTTCATTTTC	1216	False	NA	19	True	AATAAA	-6	NA	84724277	84727034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_84725195_84725571_84725870_84725952_84726050_84726144_84726257_84726345
ENSMUSG00000079003.4_5	chr8	+	1130	4	ISM	ENSMUSG00000079003.4	ENSMUST00000095228.5	2265	5	1507	5	584	-5	3prime_fragment	FALSE	canonical	3	529	junction_1	19.7709101684492	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAAGTTCATTTT	2575	False	NA	18	True	AATAAA	-5	NA	84725636	84727033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84725870_84725952_84726050_84726144_84726257_84726345
ENSMUSG00000079003.4_8	chr8	+	762	2	ISM	ENSMUSG00000079003.4	ENSMUST00000095228.5	2265	5	2049	9	1126	-9	3prime_fragment	FALSE	canonical	3	574	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTTTAAAAAAAAAAGTTCA	3117	False	NA	14	True	AATAAA	-1	NA	84726178	84727029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84726257_84726345
ENSMUSG00000079003.4_9	chr8	+	517	1	ISM	ENSMUSG00000079003.4	ENSMUST00000095228.5	2265	5	2388	4	1465	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTTCATTTTC	3456	False	NA	19	True	AATAAA	-6	NA	84726517	84727034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_84726500_84727000
ENSMUSG00000079008.3_0	chr2	+	5838	4	FSM	ENSMUSG00000079008.3	ENSMUST00000109922.2	3018	4	11	-2831	11	2831	multi-exon	FALSE	canonical	3	21	junction_3	13.8804418757713	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATATAACATTAAATGCC	NA	False	NA	NA	False	ATTAAA	-10	NA	150099447	150115051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_150099549_150108044_150108172_150108370_150108432_150109502
ENSMUSG00000079009.9_0	chr2	+	2015	4	FSM	ENSMUSG00000079009.9	ENSMUST00000109926.8	1728	4	12	-299	12	299	multi-exon	FALSE	canonical	3	34	junction_3	16.0485374896143	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAAGGCAATTCTTAG	NA	False	NA	NA	False	NA	NA	NA	150023686	150035498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775
ENSMUSG00000079009.9_11	chr2	+	2919	6	Fusion	ENSMUSG00000060336.7_ENSMUSG00000079009.9	novel	1728	4	NA	NA	25	-31	multi-exon	FALSE	canonical	3	7	junction_3	24.694938752708	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGAAAAGAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	150023699	150082614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_150023791_150032312_150032440_150032638_150032700_150078611_150078739_150078948_150079010_150080162
ENSMUSG00000079009.9_13	chr2	+	2934	4	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	-1	3171	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	26.1448954015034	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACAATGTGTGCTATGTT	NA	False	NA	NA	False	ATTAAA	-14	NA	150032311	150038370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_150032440_150032638_150032700_150033775_150035207_150037056
ENSMUSG00000079012.12_0	chr12	+	1792	5	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9694	-9	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	12.328828005938	60	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGCACATCTGCTCT	660	False	NA	8	True	AATACA	-17	NA	104343728	104360506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_104343932_104355322_104355972_104357714_104357989_104358900_104359052_104359991
ENSMUSG00000079012.12_12	chr12	+	1358	4	ISM	ENSMUSG00000079012.12	ENSMUST00000168797.2	1659	5	2142	-1	2142	1	3prime_fragment	FALSE	canonical	3	63	junction_1	13.1993265821489	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCTCTCAGCTTGCAGT	NA	False	NA	19	True	AATACA	-28	NA	104355564	104360517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_104355972_104357714_104357989_104358900_104359052_104359991
ENSMUSG00000079012.12_13	chr12	+	3625	2	NIC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	2512	-16	intron_retention	FALSE	canonical	3	91	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACAGGCTCTGAGCACAT	NA	False	NA	1	True	AATACA	-10	NA	104355934	104360499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_104359052_104359991
ENSMUSG00000079012.12_7	chr12	+	3751	6	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9673	2139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	33.4687914332143	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCATCTTGTCCATTCTTC	681	False	NA	NA	False	AAGAAA	-5	NA	104343749	104362655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_104343932_104355322_104355972_104357714_104357989_104358900_104359052_104359991_104360570_104360738
ENSMUSG00000079014.5_0	chr12	+	1337	6	Fusion	ENSMUSG00000079014.5_ENSMUSG00000041481.18	novel	1945	5	NA	NA	-13	-857	multi-exon	FALSE	canonical	0	0	junction_3	9.65401470891774	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTACGTTGTGGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	104202490	104234774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_104202578_104230560_104230695_104231352_104231972_104232703_104232978_104233914_104234066_104234702
ENSMUSG00000079014.5_13	chr12	+	2298	2	NIC	ENSMUSG00000079014.5	novel	2200	6	NA	NA	2481	-800	intron_retention	FALSE	canonical	3	22	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTATCTCTGACATAAA	NA	False	NA	NA	False	AATATA	-20	NA	104231896	104234831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_104234066_104234702
ENSMUSG00000079014.5_6	chr12	+	1407	6	FSM	ENSMUSG00000079014.5	ENSMUST00000109958.3	2200	6	-14	807	-14	-807	multi-exon	FALSE	canonical	0	0	junction_3	10.7256701422335	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCTGATAATTATCTCTG	NA	False	NA	NA	False	AATATA	-13	NA	104229366	104234824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_104229474_104230560_104230695_104231352_104231972_104232703_104232978_104233914_104234066_104234702
ENSMUSG00000079014.5_7	chr12	+	1125	5	NIC	ENSMUSG00000079014.5	novel	2200	6	NA	NA	-14	-815	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	10.6624340560681	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGCCATTCCTGATAAT	NA	False	NA	NA	False	AATATA	-5	NA	104229366	104234816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_104229474_104230560_104230695_104231352_104231972_104233914_104234066_104234702
ENSMUSG00000079014.5_8	chr12	+	2099	5	NIC	ENSMUSG00000079014.5	novel	2200	6	NA	NA	-9	-807	intron_retention	FALSE	canonical	3	17	junction_3	5.11737237261468	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCTGATAATTATCTCTG	NA	False	NA	NA	False	AATATA	-13	NA	104229406	104234824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_104229474_104230560_104230695_104231352_104232978_104233914_104234066_104234702
ENSMUSG00000079020.10_0	chr15	-	4442	8	NIC	ENSMUSG00000079020.10	novel	7509	8	NA	NA	48	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_7	37.6183845631741	694	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAACGCTGTGTTTATG	NA	False	NA	-6	True	AATAAA	-24	NA	73517563	73452141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_73453980_73456186_73456399_73457136_73457237_73457867_73458935_73459393_73459574_73461234_73461424_73477290_73477926_73517342
ENSMUSG00000079020.10_2	chr15	-	633	1	ISM	ENSMUSG00000079020.10	ENSMUST00000151288.8	7509	8	43819	2869	8037	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAACGCTGTGTTTATG	NA	False	NA	-6	True	AATAAA	-24	NA	73452774	73452141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_73452100_73452800
ENSMUSG00000079020.10_6	chr15	-	2764	4	ISM	ENSMUSG00000079020.10	ENSMUST00000132607.2	2457	7	9897	-1264	2330	0	3prime_fragment	FALSE	canonical	3	284	junction_3	20.9814733091416	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAACGCTGTGTTTATG	NA	False	NA	-6	True	AATAAA	-24	NA	73458481	73452141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_73453980_73456186_73456399_73457136_73457237_73457867
ENSMUSG00000079029.3_0	chr12	-	1855	2	FSM	ENSMUSG00000079029.3	ENSMUST00000101168.4	1840	2	5	-20	5	20	multi-exon	FALSE	canonical	2	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTGATGGTCTCTGCT	NA	False	NA	NA	False	AATAAA	-36	NA	88241265	88237389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_88239059_88241079
ENSMUSG00000079033.11_0	chr8	+	1700	13	NIC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	3	-2	combination_of_known_splicesites	TRUE	canonical	3	11	junction_5	72.9206189405073	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACCCAATCTCCTCAAAGA	8828	False	NA	2	True	NA	NA	NA	70592363	70620135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
ENSMUSG00000079033.11_1	chr8	+	1622	12	NIC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_4	72.4595070731871	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATCTCCTCAAAGATC	8828	False	NA	4	True	NA	NA	NA	70592363	70620137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
ENSMUSG00000079033.11_4	chr8	+	1324	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110143.8	1312	9	-15	3	-15	-2	multi-exon	FALSE	canonical	3	113	junction_6	45.467021015237	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACCCAATCTCCTCAAAGA	8574	False	NA	2	True	NA	NA	NA	70605412	70620135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
ENSMUSG00000079033.11_5	chr8	+	1354	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110146.9	1342	9	-15	3	-15	-2	multi-exon	FALSE	canonical	3	100	junction_6	49.3303595669036	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACCCAATCTCCTCAAAGA	8574	False	NA	2	True	NA	NA	NA	70605412	70620135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
ENSMUSG00000079036.11_0	chr12	-	2666	8	FSM	ENSMUSG00000079036.11	ENSMUST00000161712.8	2154	8	1	-513	1	510	multi-exon	FALSE	canonical	3	77	junction_6	99.4164606745846	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGCTATTTTTCTGTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	87490605	87474336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
ENSMUSG00000079036.11_1	chr12	-	2097	8	NIC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_6	101.263245543283	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	-53	True	AATAAA	-22	NA	87490601	87474846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
ENSMUSG00000079036.11_14	chr12	-	2591	7	NIC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	1	508	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	109.640954432588	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACAAGCTATTTTTCTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	87490605	87474338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488412_87488551_87490411
ENSMUSG00000079036.11_2	chr12	-	1940	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162961.8	3857	6	6	1911	0	0	multi-exon	FALSE	canonical	3	174	junction_2	59.8431282604778	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCTGTATCTGTCTTT	NA	False	NA	-56	True	AATAAA	-19	NA	87490603	87474849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87490411
ENSMUSG00000079036.11_23	chr12	-	2014	2	ISM	ENSMUSG00000079036.11	ENSMUST00000160687.2	541	4	6848	-1552	-2274	508	3prime_fragment	FALSE	canonical	3	329	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACAAGCTATTTTTCTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	87478481	87474338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_87476041_87478169
ENSMUSG00000079036.11_3	chr12	-	2021	7	FSM	ENSMUSG00000079036.11	ENSMUST00000160113.8	2019	7	-5	3	2	0	multi-exon	FALSE	canonical	3	24	junction_5	112.096312755297	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCTGTATCTGTCTTT	NA	False	NA	-56	True	AATAAA	-19	NA	87490601	87474849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87488412_87488551_87490411
ENSMUSG00000079036.11_4	chr12	-	2378	1	FSM	ENSMUSG00000079036.11	ENSMUST00000176758.3	3598	1	886	334	886	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTGTGGGTGTTTTGCC	1882	False	NA	-7	True	ATTAAA	-10	NA	87475321	87472943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87472900_87475300
ENSMUSG00000079036.11_5	chr12	-	1883	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162247.8	1883	6	-3	3	2	0	multi-exon	FALSE	canonical	3	134	junction_2	71.1983145867934	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCTGTATCTGTCTTT	NA	False	NA	-56	True	AATAAA	-19	NA	87490601	87474849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87490411
ENSMUSG00000079036.11_51	chr12	-	446	1	FSM	ENSMUSG00000079036.11	ENSMUST00000185301.2	408	1	87	-125	2	125	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	87490601	87490155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87490200_87490600
ENSMUSG00000079037.10_0	chr2	+	2145	3	FSM	ENSMUSG00000079037.10	ENSMUST00000091288.13	2184	3	34	5	20	-5	multi-exon	FALSE	canonical	3	54	junction_2	0.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACACCTGGCGGGGTTT	NA	False	NA	2	True	ATTAAA	-12	NA	131751881	131780344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_131751924_131754114_131754213_131778339
ENSMUSG00000079037.10_3	chr2	+	2105	2	ISM	ENSMUSG00000079037.10	ENSMUST00000091288.13	2184	3	2265	5	2251	-5	3prime_fragment	FALSE	canonical	3	54	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACACCTGGCGGGGTTT	NA	False	NA	2	True	ATTAAA	-12	NA	131754112	131780344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_131754213_131778339
ENSMUSG00000079037.10_4	chr2	+	1707	1	ISM	ENSMUSG00000079037.10	ENSMUST00000091288.13	2184	3	26793	2	26779	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACCTGGCGGGGTTTGTT	NA	False	NA	5	True	ATTAAA	-15	NA	131778640	131780347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_131778600_131780300
ENSMUSG00000079038.4_0	chr8	+	2547	5	NIC	ENSMUSG00000079038.4	novel	2002	6	NA	NA	16	828	combination_of_known_splicesites	FALSE	canonical	2	14	junction_4	0.82915619758885	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCGTGAAAATAATTGTCT	7177	False	NA	NA	False	CATAAA	-14	NA	69723761	69756855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_69723844_69743913_69743975_69752904_69753032_69753409_69753474_69754642
ENSMUSG00000079042.11_0	chr8	-	930	3	FSM	ENSMUSG00000079042.11	ENSMUST00000124790.8	945	3	12	3	12	-3	multi-exon	FALSE	canonical	3	429	junction_2	5	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATATTTATGAGTTTATT	NA	False	NA	-27	True	ATTAAA	-15	NA	65489812	65481074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_65481644_65488316_65488407_65489541
ENSMUSG00000079043.4_0	chr2	-	3128	3	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	21	-13	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_1	74	144	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGACATTGATCCACAA	NA	False	NA	-18	True	AATAAA	-12	NA	130471926	130455772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_130458663_130470408_130470556_130471835
ENSMUSG00000079043.4_1	chr2	-	2980	2	FSM	ENSMUSG00000079043.4	ENSMUST00000110262.3	3015	2	22	13	22	-13	multi-exon	FALSE	canonical	3	43	junction_1	0	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGACATTGATCCACAA	NA	False	NA	-18	True	AATAAA	-12	NA	130471925	130455772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130458663_130471835
ENSMUSG00000079043.4_2	chr2	-	3091	3	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	21	-13	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	92.5	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGACATTGATCCACAA	NA	False	NA	-18	True	AATAAA	-12	NA	130471926	130455772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_130458626_130470408_130470556_130471835
ENSMUSG00000079043.4_3	chr2	-	2941	2	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	24	-13	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	0	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGACATTGATCCACAA	NA	False	NA	-18	True	AATAAA	-12	NA	130471923	130455772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_130458626_130471835
ENSMUSG00000079043.4_5	chr2	-	2095	1	FSM	ENSMUSG00000079043.4	ENSMUST00000179273.2	2424	1	721	-392	721	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGACATTGATCCACAA	NA	False	NA	-18	True	AATAAA	-12	NA	130457867	130455772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_130455800_130457900
ENSMUSG00000079056.13_0	chr2	-	2861	8	FSM	ENSMUSG00000079056.13	ENSMUST00000088538.6	1296	8	59	-1624	59	-8	multi-exon	FALSE	canonical	3	65	junction_1	5.52175659716791	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGGAGATGGACTCTCT	9687	False	NA	-7	True	AATAAA	-10	NA	127324360	127298425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307899_127323924
ENSMUSG00000079056.13_1	chr2	-	1441	1	ISM	ENSMUSG00000079056.13	ENSMUST00000028850.15	2728	9	63426	6	24555	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAGATGGACTCTCTCC	2172	False	NA	-5	True	AATAAA	-12	NA	127299864	127298423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_127298400_127299900
ENSMUSG00000079083.4_0	chr9	-	3150	1	FSM	ENSMUSG00000079083.4	ENSMUST00000110582.4	3223	1	-273	346	-273	-346	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTTTGAATGTTTTGAT	NA	False	NA	-6	True	ATTAAA	-15	NA	13246107	13242957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_13243000_13246100
ENSMUSG00000079084.13_1	chr9	+	1142	3	FSM	ENSMUSG00000079084.13	ENSMUST00000169961.3	2369	3	14	1213	-13	1017	multi-exon	FALSE	canonical	3	27	junction_1	5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAATTCATTTCCCTTTT	NA	False	NA	7	True	AATAAA	-19	NA	13246623	13253211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_13246677_13251695_13252424_13252850
ENSMUSG00000079084.13_2	chr9	+	2448	4	FSM	ENSMUSG00000079084.13	ENSMUST00000215735.2	2723	4	-28	303	-1	-6	multi-exon	FALSE	canonical	2	2	junction_1	15.2825245151302	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGATCAGTTTTACTGT	NA	False	NA	NA	False	NA	NA	NA	13246608	13254418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_13246677_13248883_13248968_13251695_13252424_13252850
ENSMUSG00000079084.13_3	chr9	+	4559	8	FSM	ENSMUSG00000079084.13	ENSMUST00000217444.4	4816	8	86	171	12	-7	multi-exon	FALSE	canonical	2	4	junction_3	11.4944529656523	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATAACTTTCTCTTTCTC	NA	False	NA	NA	False	ATTAAA	-19	NA	13246621	13292696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_13246677_13251695_13252424_13252850_13253056_13262360_13262454_13266811_13266937_13272649_13272821_13281884_13282071_13289700
ENSMUSG00000079084.13_6	chr9	+	6353	1	NIC	ENSMUSG00000079084.13	novel	4816	8	NA	NA	13936	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCATAACTTTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	13286340	13292693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_13286300_13292700
ENSMUSG00000079104.5_1	chr12	+	3929	2	FSM	ENSMUSG00000079104.5	ENSMUST00000139049.2	1720	2	74	-2283	74	2283	multi-exon	FALSE	canonical	3	317	junction_1	0	583	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGGTCTATGTTTTGTTT	NA	False	NA	13	True	ATTAAA	-17	NA	57277271	57288951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_57277398_57285148
ENSMUSG00000079108.7_0	chr12	+	2132	16	FSM	ENSMUSG00000079108.7	ENSMUST00000218879.2	3642	16	273	1237	273	-421	multi-exon	FALSE	canonical	3	179	junction_11	270.209005524736	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAAAGGGTTCGTTAAC	NA	False	NA	NA	False	AATAAA	-12	NA	55277225	55309384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55292723_55292829_55294017_55294085_55294164_55294223_55296788_55296940_55298428_55298578_55298911_55299013_55299556_55299644_55302323_55302398_55302752_55302862_55304209_55304381_55307187_55307284_55308911
ENSMUSG00000079108.7_2	chr12	+	2470	16	Fusion	ENSMUSG00000112368.2_ENSMUSG00000079108.7	novel	3642	16	NA	NA	272	608	multi-exon	FALSE	canonical	3	11	junction_15	308.573376831004	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGGAAGCACTGTGGAT	NA	False	NA	NA	False	AATAAA	-7	NA	55277224	55326107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55292723_55292829_55294017_55294085_55294164_55294223_55296788_55296940_55298428_55298578_55298911_55299013_55299556_55299644_55302323_55302398_55302752_55302862_55304209_55304381_55307187_55307284_55325297
ENSMUSG00000079109.12_0	chr5	+	2887	15	FSM	ENSMUSG00000079109.12	ENSMUST00000170083.8	5477	15	57	2533	-4	-7	multi-exon	FALSE	canonical	2	18	junction_1	27.3439916170083	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTTTTACCATGTCTG	NA	False	NA	NA	False	AAAAAG	-10	NA	143846838	143868253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143846898_143848743_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
ENSMUSG00000079109.12_1	chr5	+	2896	15	FSM	ENSMUSG00000079109.12	ENSMUST00000148011.8	5482	15	58	2528	-3	-2	multi-exon	FALSE	canonical	3	72	junction_4	18.4303708977484	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTACCATGTCTGCAGTT	NA	False	NA	NA	False	AAAAAG	-15	NA	143846839	143868258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
ENSMUSG00000079109.12_35	chr5	+	2237	10	ISM	ENSMUSG00000079109.12	ENSMUST00000148011.8	5482	15	6481	2526	3127	0	3prime_fragment	FALSE	canonical	3	76	junction_1	18.6931029731672	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCATGTCTGCAGTTAC	NA	False	NA	NA	False	AAAAAG	-17	NA	143853262	143868260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
ENSMUSG00000079109.12_9	chr5	+	2750	14	NIC	ENSMUSG00000079109.12	novel	5482	15	NA	NA	-3	-8	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	28.7468032696655	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCTTTTTACCATGTCT	NA	False	NA	NA	False	AAAAAG	-9	NA	143846839	143868252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_143846898_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
ENSMUSG00000079110.13_0	chr2	+	2604	21	FSM	ENSMUSG00000079110.13	ENSMUST00000028748.14	2622	21	6	12	6	-3	multi-exon	FALSE	canonical	0	0	junction_10	2.41039415863879	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCCACCATTCTCCTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	120307395	120335387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_120307712_120311163_120311234_120312590_120312710_120314971_120315106_120315661_120315831_120318554_120318639_120320148_120320235_120321434_120321513_120322274_120322436_120325252_120325423_120325716_120325729_120326345_120326555_120327458_120327496_120332583_120332662_120332867_120332926_120333009_120333075_120333456_120333526_120333613_120333693_120333829_120333947_120334576_120334636_120334953
ENSMUSG00000079111.4_0	chr5	+	1830	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	-6	5	-6	-5	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	648	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATGTATGGTCTTT	NA	False	NA	NA	False	AATAAA	-10	NA	143389586	143407651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
ENSMUSG00000079139.5_0	chr1	+	1302	1	FSM	ENSMUSG00000079139.5	ENSMUST00000110798.5	1231	1	101	-172	101	172	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACTCAAAAAAAAATGTT	4262	False	NA	NA	False	AATAAA	-9	NA	135159833	135161135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_135159800_135161100
ENSMUSG00000079144.8_0	chr1	+	3608	2	FSM	ENSMUSG00000079144.8	ENSMUST00000110831.4	2257	2	6	-1357	0	-175	multi-exon	FALSE	canonical	3	16	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAACAAATAAAGAAAG	967	False	NA	-24	True	NA	NA	NA	192855893	192859965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_192856089_192856552
ENSMUSG00000079144.8_1	chr1	+	2566	2	FSM	ENSMUSG00000079144.8	ENSMUST00000193307.2	705	2	-158	-1703	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATGTCCTGAAATCATT	967	False	NA	NA	False	AATAAA	-15	NA	192855893	192858606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_192856406_192856552
ENSMUSG00000079144.8_2	chr1	+	3591	2	FSM	ENSMUSG00000079144.8	ENSMUST00000178744.2	3782	2	8	183	-1	-183	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACTAATAAATAAACAAAT	966	False	NA	-32	True	NA	NA	NA	192855892	192859957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_192856079_192856552
ENSMUSG00000079144.8_4	chr1	+	2702	1	ISM	ENSMUSG00000079144.8	ENSMUST00000160822.3	3793	3	6943	142	1245	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTGGAGGACATGCCTC	2370	False	NA	9	True	NA	NA	NA	192857296	192859998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_192857300_192860000
ENSMUSG00000079165.11_0	chr5	+	1055	6	FSM	ENSMUSG00000079165.11	ENSMUST00000177466.8	1005	6	-22	-28	-22	-3	multi-exon	FALSE	canonical	3	122	junction_1	39.5858560599616	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGGCTGTCTGCAGTG	1079	False	NA	20	True	AATAAA	-12	NA	137639573	137641158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137639819_137639983_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUSG00000079165.11_1	chr5	+	1042	6	NNC	ENSMUSG00000079165.11	novel	1005	6	NA	NA	-30	-3	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	81.7958434151761	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGGCTGTCTGCAGTG	1071	False	NA	20	True	AATAAA	-12	NA	137639565	137641158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_137639819_137640004_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUSG00000079173.12_12	chr5	-	2005	14	ISM	ENSMUSG00000079173.12	ENSMUST00000164178.2	16451	87	84594	1	9737	-1	3prime_fragment	FALSE	canonical	1	1	junction_9	2.54195563720897	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTTGTTTTGTGATTGT	NA	False	NA	NA	False	TTTAAA	-3	NA	137390263	137376899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137376982_137377065_137377110_137377209_137377340_137379047_137379189_137380334_137380474_137380567_137380768_137381974_137382115_137384591_137384763_137385171_137385344_137386082_137386213_137387093_137387339_137387496_137387639_137389899_137390118_137390212
ENSMUSG00000079173.12_2	chr5	-	1754	4	ISM	ENSMUSG00000079173.12	ENSMUST00000164178.2	16451	87	87736	6440	12879	-6440	internal_fragment	FALSE	canonical	1	1	junction_2	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAGAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	137387121	137383338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137384763_137385171_137385344_137386082_137386213_137387093
ENSMUSG00000079173.12_3	chr5	-	1386	3	ISM	ENSMUSG00000079173.12	ENSMUST00000164178.2	16451	87	82002	13560	7145	6337	internal_fragment	FALSE	canonical	3	9	junction_2	1	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAAAAATTTTA	NA	False	NA	NA	False	NA	NA	NA	137392855	137390458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137391490_137391800_137391943_137392642
ENSMUSG00000079173.12_7	chr5	-	1068	2	ISM	ENSMUSG00000079173.12	ENSMUST00000130056.2	2114	8	12796	9	12796	-9	3prime_fragment	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATTGAAAAAGGCAGT	NA	False	NA	NA	False	NA	NA	NA	137436089	137434139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_137435100_137435981
ENSMUSG00000079177.5_0	chr12	-	3631	8	FSM	ENSMUSG00000079177.5	ENSMUST00000111154.4	3004	8	27	-654	27	654	multi-exon	FALSE	canonical	0	0	junction_1	1.30930734141595	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGATATCTTTGTTCCCA	NA	False	NA	NA	False	AATAAA	-13	NA	4788392	4763015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_4765708_4768576_4768719_4781139_4781306_4781424_4781507_4782740_4782930_4784967_4785037_4787678_4787786_4788208
ENSMUSG00000079179.10_1	chr12	+	1530	8	NIC	ENSMUSG00000079179.10	novel	823	8	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_7	75.6511866451302	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGCCTGTTAGGCCA	NA	False	NA	NA	False	AATAAA	-20	NA	3285511	3300376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3288833_3289010_3291521_3291579_3297351_3297439_3299866
ENSMUSG00000079179.10_12	chr12	+	2467	6	ISM	ENSMUSG00000079179.10	ENSMUST00000179924.8	823	8	-398	6827	-9	1707	5prime_fragment	FALSE	canonical	3	23	junction_5	69.4682661364166	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATACAAGACTGTTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	3285516	3293117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3288833_3289010_3291521
ENSMUSG00000079179.10_14	chr12	+	3229	5	FSM	ENSMUSG00000079179.10	ENSMUST00000179908.8	746	5	-315	-2168	-9	-8	multi-exon	FALSE	canonical	3	40	junction_4	71.5925973826903	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTGATAAGAAAGCTCT	NA	False	NA	NA	False	AATAAA	-12	NA	3285516	3291402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288063_3288113_3288833
ENSMUSG00000079179.10_15	chr12	+	3831	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178331.8	812	4	-9	-3010	-9	-127	multi-exon	FALSE	canonical	3	41	junction_3	69.5621225156974	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATGTCAAGAGTGTTAA	NA	False	NA	NA	False	AATAAA	-12	NA	3285516	3291283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288063
ENSMUSG00000079179.10_2	chr12	+	3148	5	ISM	ENSMUSG00000079179.10	ENSMUST00000179924.8	823	8	-398	8658	-9	-124	5prime_fragment	FALSE	canonical	3	40	junction_4	60.7345659406569	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTCAAGAGTGTTAATTT	NA	False	NA	NA	False	AATAAA	-15	NA	3285516	3291286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3288833
ENSMUSG00000079179.10_28	chr12	+	1787	1	ISM	ENSMUSG00000079179.10	ENSMUST00000178074.8	4006	4	4119	1	3012	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAAGCTCTTACTTGA	NA	False	NA	NA	False	AATAAA	-19	NA	3289622	3291409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_3289600_3291400
ENSMUSG00000079179.10_5	chr12	+	2270	3	ISM	ENSMUSG00000079179.10	ENSMUST00000177896.8	2872	7	-7	12043	-7	61	5prime_fragment	FALSE	canonical	3	138	junction_2	36.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAATGATGTCATAGTTG	NA	False	NA	71	True	CATAAA	-1	NA	3285518	3288334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_3287413_3287590_3287661_3288028
ENSMUSG00000079179.10_7	chr12	+	3849	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178074.8	4006	4	13	144	-9	-144	multi-exon	FALSE	canonical	3	136	junction_1	34.8934887272046	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAAGAGTTAATCATG	NA	False	NA	NA	False	GATAAA	-32	NA	3285516	3291266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028
ENSMUSG00000079184.11_0	chr14	+	2904	14	FSM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	30	5	30	-2	multi-exon	FALSE	canonical	3	627	junction_4	88.7108193370776	1192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATTTTCTACTAGTCGT	1808	False	NA	27	True	ATTAAA	-13	NA	56905734	56934882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_56906022_56909861_56910018_56911347_56912197_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
ENSMUSG00000079184.11_1	chr14	+	2938	14	NNC	ENSMUSG00000079184.11	novel	2939	14	NA	NA	32	-2	at_least_one_novel_splicesite	FALSE	canonical	3	111	junction_3	214.971059012644	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATTTTCTACTAGTCGT	1810	False	NA	27	True	ATTAAA	-13	NA	56905736	56934882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_56906022_56909861_56910018_56911347_56912233_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
ENSMUSG00000079197.11_0	chr14	-	819	11	FSM	ENSMUSG00000079197.11	ENSMUST00000161807.8	962	11	136	7	-3	-1	multi-exon	FALSE	canonical	3	915	junction_9	61.4455856835949	311	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATATTACCTGTGTTGT	NA	False	NA	NA	False	AATAAA	-14	NA	55828408	55824904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828298
ENSMUSG00000079215.9_0	chr5	+	4048	4	FSM	ENSMUSG00000079215.9	ENSMUST00000111417.9	4092	4	37	7	-36	-7	multi-exon	FALSE	canonical	3	206	junction_3	10.2089285540757	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGGACCCTATGTTTCCT	NA	False	NA	1	True	NA	NA	NA	124939791	124965687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124939947_124940417_124940573_124961771_124961837_124962014
ENSMUSG00000079215.9_9	chr5	+	2758	1	ISM	ENSMUSG00000079215.9	ENSMUST00000111417.9	4092	4	23178	4	1300	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGACCCTATGTTTCCTGTG	NA	False	NA	4	True	NA	NA	NA	124962932	124965690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_124962900_124965700
ENSMUSG00000079225.4_0	chr9	+	834	2	NNC	ENSMUSG00000079225.4	novel	638	2	NA	NA	-57	-10	at_least_one_novel_splicesite	FALSE	canonical	3	2674	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81559593	81560720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_81560062_81560354
ENSMUSG00000079225.4_1	chr9	+	886	1	FSM	ENSMUSG00000079225.4	ENSMUST00000183511.2	775	1	167	-278	167	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAGGAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81559831	81560717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_81559800_81560700
ENSMUSG00000079225.4_2	chr9	+	688	2	FSM	ENSMUSG00000079225.4	ENSMUST00000055820.7	638	2	-57	7	-57	-7	multi-exon	FALSE	canonical	3	2455	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81559593	81560723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_81559913_81560354
ENSMUSG00000079235.11_2	chr9	-	2588	15	ISM	ENSMUSG00000079235.11	ENSMUST00000135986.9	2640	16	5508	1	-2874	-1	3prime_fragment	FALSE	canonical	1	2	junction_4	1.88034951158403	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACAGCTCTCGTGGAGTG	NA	False	NA	NA	False	NA	NA	NA	121663019	121626693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_121627306_121628091_121628207_121629568_121629718_121637217_121637341_121638146_121638231_121639159_121639288_121642351_121642559_121643235_121643413_121645658_121645821_121648560_121648666_121649725_121649843_121654033_121654124_121656298_121656442_121659942_121660092_121662792
ENSMUSG00000079242.3_0	chr15	+	182	1	FSM	ENSMUSG00000079242.3	ENSMUST00000168646.2	1280	1	905	193	905	-193	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGAAAGCCTAGGGAGTG	NA	False	NA	NA	False	NA	NA	NA	89314696	89314878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_89314700_89314900
ENSMUSG00000079247.3_0	chr2	+	3183	2	Genic_Genomic	ENSMUSG00000079247.3	novel	2493	1	NA	NA	-787	578	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGCTAATTTTCATTGT	7259	False	NA	NA	False	AATAAA	-19	NA	83820109	83823967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_83820134_83820808
ENSMUSG00000079247.3_3	chr2	+	2936	1	FSM	ENSMUSG00000079247.3	ENSMUST00000099947.3	2493	1	131	-574	131	574	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGTAAGCTAATTTTCA	8177	False	NA	NA	False	AATAAA	-15	NA	83821027	83823963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_83821000_83824000
ENSMUSG00000079259.3_0	chr9	-	3028	1	ISM	ENSMUSG00000079259.3	ENSMUST00000111816.3	9332	4	54202	7	54202	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	503	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACTTGGTGTCCGTG	NA	False	NA	-10	True	AATAAA	-15	NA	114339235	114336207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_114336200_114339200
ENSMUSG00000079259.3_1	chr9	-	7812	4	FSM	ENSMUSG00000079259.3	ENSMUST00000111816.3	9332	4	370	1150	370	-1150	multi-exon	FALSE	canonical	3	18	junction_1	6.79869268479038	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAATACCTCAATAATGT	NA	False	NA	NA	False	AATAAA	-11	NA	114393067	114337350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_114343165_114344800_114344936_114354021_114354190_114391372
ENSMUSG00000079260.4_0	chr9	+	3176	2	FSM	ENSMUSG00000079260.4	ENSMUST00000111820.4	2921	2	40	-295	40	295	multi-exon	FALSE	canonical	3	40	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACCCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114230212	114236639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_114230338_114233588
ENSMUSG00000079260.4_1	chr9	+	6604	3	NNC	ENSMUSG00000079260.4	novel	2921	2	NA	NA	45	3921	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	20	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACAATTCGGTGTCCATT	NA	False	NA	9	True	AATAAA	-17	NA	114230217	114240265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_114230338_114233588_114236495_114236687
ENSMUSG00000079260.4_6	chr9	+	3152	2	NNC	ENSMUSG00000079260.4	novel	2921	2	NA	NA	352	295	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACCCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114230524	114236639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_114230626_114233588
ENSMUSG00000079260.4_8	chr9	+	6613	3	NNC	ENSMUSG00000079260.4	novel	2921	2	NA	NA	30	3915	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	20	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGATCACAATTCGGTG	NA	False	NA	3	True	AATAAA	-11	NA	114230202	114240259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_114230338_114233588_114236485_114236677
ENSMUSG00000079283.3_1	chr1	-	483	3	FSM	ENSMUSG00000079283.3	ENSMUST00000112025.3	565	3	27	55	22	-5	multi-exon	FALSE	canonical	3	59	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACCTGTTACGAATATT	NA	False	NA	-13	True	AATAAA	-13	NA	138784563	138779775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_138779912_138781308_138781411_138784318
ENSMUSG00000079283.3_2	chr1	-	3394	2	FSM	ENSMUSG00000079283.3	ENSMUST00000195075.2	970	2	-2475	51	22	-2	multi-exon	FALSE	canonical	3	59	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTGTTACGAATATTTGA	NA	False	NA	-10	True	AATAAA	-16	NA	138784563	138779772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_138779912_138781308
ENSMUSG00000079283.3_4	chr1	-	1141	1	NIC	ENSMUSG00000079283.3	novel	565	3	NA	NA	17	-3657	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGACAGCCTTTGACCGTT	NA	False	NA	NA	False	AATAAA	-17	NA	138784568	138783427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_138783400_138784600
ENSMUSG00000079316.11_0	chrX	-	1240	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	200	7	-21	-7	multi-exon	FALSE	canonical	3	555	junction_2	7.5	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTTACGTTGCAATGC	NA	False	NA	-15	True	ATTAAA	-17	NA	165262663	165240255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_165241340_165245310_165245339_165262535
ENSMUSG00000079316.11_1	chrX	-	636	1	ISM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	21972	7	17540	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTTACGTTGCAATGC	NA	False	NA	-15	True	ATTAAA	-17	NA	165240891	165240255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_165240300_165240900
ENSMUSG00000079317.11_1	chrX	+	1399	5	FSM	ENSMUSG00000079317.11	ENSMUST00000116495.8	1613	5	208	6	6	-4	multi-exon	FALSE	canonical	0	0	junction_3	101.671038157383	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAAGAATGTGGTCATTT	NA	False	NA	3	True	AATAAA	-8	NA	165223777	165236130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_165223836_165229786_165229899_165232783_165232929_165233624_165233711_165235132
ENSMUSG00000079334.9_0	chr9	+	1485	2	FSM	ENSMUSG00000079334.9	ENSMUST00000093785.6	2053	2	561	7	561	-7	multi-exon	FALSE	canonical	3	8	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATGGCTGTGACAGTTT	NA	False	NA	5	True	AATAAA	-11	NA	107457876	107461242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_107458135_107460015
ENSMUSG00000079334.9_2	chr9	+	1287	1	NIC	ENSMUSG00000079334.9	novel	2053	2	NA	NA	2644	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCTGTGACAGTTTATTG	NA	False	NA	9	True	AATAAA	-15	NA	107459959	107461246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_107460000_107461200
ENSMUSG00000079349.10_0	chrX	-	1643	4	FSM	ENSMUSG00000079349.10	ENSMUST00000069556.4	1360	4	-1	-282	-1	-2	multi-exon	FALSE	canonical	3	37	junction_1	7.03957069398096	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTGTTTAGTTTCTTT	NA	False	NA	-2	True	AATAAA	-16	NA	153846142	153836058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_153837456_153838390_153838480_153844474_153844576_153846086
ENSMUSG00000079349.10_1	chrX	-	1752	5	NNC	ENSMUSG00000079349.10	novel	1360	4	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	19.2272592950738	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTGTTTAGTTTCTTT	NA	False	NA	-2	True	AATAAA	-16	NA	153846147	153836058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_153837456_153838390_153838480_153844474_153844576_153845292_153845397_153846086
ENSMUSG00000079349.10_2	chrX	-	785	1	ISM	ENSMUSG00000079349.10	ENSMUST00000169540.8	1563	3	7708	0	7708	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTAGTTTCTTTTT	NA	False	NA	0	True	AATAAA	-18	NA	153836841	153836056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_153836100_153836800
ENSMUSG00000079349.10_3	chrX	-	1550	3	NIC	ENSMUSG00000079349.10	novel	1360	4	NA	NA	3	-2	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	18.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTGTTTAGTTTCTTT	NA	False	NA	-2	True	AATAAA	-16	NA	153846138	153836058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_153837456_153844474_153844576_153846086
ENSMUSG00000079350.3_0	chrX	-	1752	5	NNC	ENSMUSG00000079350.3	novel	1646	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	13.4233937586588	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTTAGTTTCTTGTT	NA	False	NA	-3	True	AATAAA	-18	NA	153778846	153768768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_153770173_153771107_153771197_153777179_153777280_153777995_153778100_153778791
ENSMUSG00000079350.3_1	chrX	-	1643	4	FSM	ENSMUSG00000079350.3	ENSMUST00000070141.7	1646	4	3	0	3	0	multi-exon	FALSE	canonical	3	13	junction_3	17.6823829464998	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTCTTTAGTTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	153778843	153768770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_153770173_153771107_153771197_153777179_153777280_153778791
ENSMUSG00000079364.4_15	chr14	+	4100	5	ISM	ENSMUSG00000079364.4	ENSMUST00000163790.2	2055	7	13456	6	13456	-6	3prime_fragment	FALSE	canonical	0	0	junction_2	24.802973612049	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCAGTGTATGCT	NA	False	NA	NA	False	AATAAA	-11	NA	14914662	14924616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_14917147_14917878_14918042_14918991_14919124_14919799_14919983_14923478
ENSMUSG00000079364.4_16	chr14	+	4208	6	NNC	ENSMUSG00000079364.4	novel	2055	7	NA	NA	13191	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	22.5601418435257	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCAGTGTATGCT	NA	False	NA	NA	False	AATAAA	-11	NA	14914397	14924616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_14916855_14917011_14917147_14917878_14918042_14918991_14919124_14919799_14919983_14923478
ENSMUSG00000079364.4_18	chr14	+	3001	4	NIC	ENSMUSG00000079364.4	novel	2055	7	NA	NA	15287	-6	intron_retention	FALSE	canonical	0	0	junction_1	2.82842712474619	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCAGTGTATGCT	NA	False	NA	NA	False	AATAAA	-11	NA	14916493	14924616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_14918042_14918991_14919124_14919799_14919983_14923478
ENSMUSG00000079364.4_29	chr14	+	2034	6	NNC	ENSMUSG00000079364.4	novel	2055	7	NA	NA	-90239	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	23.1170932428798	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACACAGCAGTGTATG	6829	False	NA	NA	False	AATAAA	-9	NA	14810967	14924614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_14811253_14917011_14917147_14917878_14918042_14918991_14919124_14919799_14919983_14923478
ENSMUSG00000079386.9_3	chr14	-	4485	4	FSM	ENSMUSG00000079386.9	ENSMUST00000112776.4	519	4	-2917	-1049	-2917	1049	multi-exon	FALSE	canonical	0	0	junction_2	16.0277537068951	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACACAGCAGTGTATG	NA	False	NA	NA	False	AATAAA	-9	NA	17957932	17949271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_17950397_17952946_17953130_17953805_17953938_17954887
ENSMUSG00000079387.11_1	chrX	+	2037	7	FSM	ENSMUSG00000079387.11	ENSMUST00000163338.2	2025	7	-16	4	-16	-4	multi-exon	FALSE	canonical	1	5	junction_3	4.85626742811116	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATTTCTTTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	147665555	147707131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_147665664_147686432_147686559_147687278_147687359_147690981_147691941_147698819_147698902_147699707_147699758_147706499
ENSMUSG00000079387.11_3	chrX	+	2751	6	NIC	ENSMUSG00000079387.11	novel	2025	7	NA	NA	-16	-10	intron_retention	FALSE	canonical	1	5	junction_2	5.2687759489278	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTGTTATTTCTTTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	147665555	147707125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_147665664_147686432_147687359_147690981_147691941_147698819_147698902_147699707_147699758_147706499
ENSMUSG00000079414.4_1	chr17	-	892	3	FSM	ENSMUSG00000079414.4	ENSMUST00000233454.2	1560	3	-10	678	-10	-13	multi-exon	FALSE	canonical	0	0	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTAAGCCCCTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	57412932	57399047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_57399770_57410349_57410485_57412897
ENSMUSG00000079415.3_0	chr19	-	908	2	FSM	ENSMUSG00000079415.3	ENSMUST00000112933.2	1073	2	296	-131	296	131	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTATCTTCATTCAAACT	NA	False	NA	NA	False	AATAAA	-16	NA	12742700	12740892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_12741745_12742644
ENSMUSG00000079415.3_1	chr19	-	1105	1	NIC	ENSMUSG00000079415.3	novel	1073	2	NA	NA	868	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTAGTGCTTTACCCTT	NA	False	NA	NA	False	AATAAA	-24	NA	12742128	12741023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_12741000_12742100
ENSMUSG00000079418.6_0	chrX	+	2108	13	FSM	ENSMUSG00000079418.6	ENSMUST00000112971.2	2202	13	11	83	11	-8	multi-exon	FALSE	canonical	2	18	junction_1	12.4707992259251	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATACTGTTTTGGTTGA	NA	False	NA	NA	False	AATAAA	-8	NA	139857666	139947183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_139857721_139887027_139887139_139888914_139888987_139890906_139891006_139893565_139893668_139893817_139893891_139895351_139895432_139896010_139896190_139896311_139896391_139941722_139941869_139943027_139943085_139945462_139945572_139946236
ENSMUSG00000079418.6_1	chrX	+	4490	12	NIC	ENSMUSG00000079418.6	novel	2202	13	NA	NA	11	-4	intron_retention	FALSE	canonical	2	18	junction_1	12.7946269714612	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGTTTTGGTTGAGAAC	NA	False	NA	NA	False	AATAAA	-12	NA	139857666	139947187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_139857721_139887027_139887139_139888914_139888987_139890906_139891006_139893565_139893668_139893817_139893891_139895351_139895432_139896010_139896190_139896311_139896391_139941722_139941869_139943027_139945572_139946236
ENSMUSG00000079418.6_2	chrX	+	1971	12	ISM	ENSMUSG00000079418.6	ENSMUST00000112971.2	2202	13	29370	168	6391	-93	3prime_fragment	FALSE	canonical	3	41	junction_1	8.34781111509018	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCAAGAGGAAGGCTGG	NA	False	NA	NA	False	NA	NA	NA	139887025	139947098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_139887139_139888914_139888987_139890906_139891006_139893565_139893668_139893817_139893891_139895351_139895432_139896010_139896190_139896311_139896391_139941722_139941869_139943027_139943085_139945462_139945572_139946236
ENSMUSG00000079426.14_0	chr6	+	1404	6	FSM	ENSMUSG00000079426.14	ENSMUST00000156898.5	2270	6	67	799	-11	-3	multi-exon	FALSE	canonical	3	688	junction_1	248.294985853521	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGGTCTGTGCTCTGTGT	NA	False	NA	35	True	ATTAAA	-27	NA	113355142	113366610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
ENSMUSG00000079426.14_10	chr6	+	1378	5	ISM	ENSMUSG00000030276.20_ENSMUSG00000079426.14	ENSMUST00000204802.2	794	6	2155	-634	2155	-3	3prime_fragment	FALSE	canonical	3	1123	junction_4	109.922700112397	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGGTCTGTGCTCTGTGT	NA	False	NA	35	True	ATTAAA	-27	NA	113357685	113366610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
ENSMUSG00000079427.11_4	chr9	-	767	3	FSM	ENSMUSG00000079427.11	ENSMUST00000113110.5	801	3	20	14	20	-10	multi-exon	FALSE	canonical	3	319	junction_2	104	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATCCTATTTAGAAAT	NA	False	NA	NA	False	AATAAA	-6	NA	88601846	88570668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88571039_88597540_88597803_88601711
ENSMUSG00000079427.11_5	chr9	-	684	3	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	22	-18	combination_of_known_splicesites	FALSE	canonical	3	156	junction_2	185.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAATATAAAATCCTAT	NA	False	NA	NA	False	ATTAAA	-34	NA	88601601	88570676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_88571039_88597540_88597803_88601541
ENSMUSG00000079427.11_6	chr9	-	4453	2	FSM	ENSMUSG00000079427.11	ENSMUST00000185519.7	1103	2	-3350	0	10	0	multi-exon	TRUE	canonical	3	527	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88601613	88570658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88571039_88597540
ENSMUSG00000079427.11_7	chr9	-	775	4	FSM	ENSMUSG00000079427.11	ENSMUST00000186863.7	725	4	26	-76	9	-10	multi-exon	FALSE	canonical	3	43	junction_3	219.136182924378	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATCCTATTTAGAAAT	NA	False	NA	NA	False	AATAAA	-6	NA	88601614	88570668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88571039_88597540_88597803_88598546_88598617_88601541
ENSMUSG00000079427.11_9	chr9	-	3680	3	ISM	ENSMUSG00000079427.11	ENSMUST00000186863.7	725	4	48	-78	31	-8	intron_retention	FALSE	canonical	3	84	junction_2	221.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCCTATTTAGAAATCA	NA	False	NA	NA	False	AATAAA	-8	NA	88601592	88570666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_88571039_88597540_88597803_88598546
ENSMUSG00000079432.2_0	chrX	-	3830	5	NNC	ENSMUSG00000079432.2	novel	3698	5	NA	NA	30	154	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	91.6801505234366	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134078351	134068218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_134070935_134071511_134072097_134073399_134073700_134077924_134078052_134078249
ENSMUSG00000079432.2_1	chrX	-	3826	5	FSM	ENSMUSG00000079432.2	ENSMUST00000113183.2	3698	5	30	-158	30	158	multi-exon	FALSE	canonical	3	86	junction_3	56.4933624419719	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTATTGGTTCTTCGTG	NA	False	NA	NA	False	ATTAAA	-14	NA	134078351	134068214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_134070935_134071511_134072097_134073399_134073700_134077932_134078052_134078249
ENSMUSG00000079432.2_2	chrX	-	3724	6	NNC	ENSMUSG00000079432.2	novel	3698	5	NA	NA	29	-1	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	99.3390154974369	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCCATGAGATTCATTT	NA	False	NA	NA	False	AGTAAA	-15	NA	134078352	134068373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_134070935_134071511_134072097_134073399_134073700_134074196_134074253_134077932_134078052_134078249
ENSMUSG00000079432.2_4	chrX	-	4721	3	ISM	ENSMUSG00000079432.2	ENSMUST00000113183.2	3698	5	3569	-161	3569	161	3prime_fragment	FALSE	canonical	3	186	junction_2	28.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	134074812	134068211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_134070935_134071511_134072097_134073399
ENSMUSG00000079432.2_5	chrX	-	3887	6	NNC	ENSMUSG00000079432.2	novel	3698	5	NA	NA	29	154	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	100.324672937419	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134078352	134068218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_134070935_134071511_134072097_134073399_134073700_134074196_134074253_134077924_134078052_134078249
ENSMUSG00000079435.10_0	chrX	+	443	5	FSM	ENSMUSG00000079435.10	ENSMUST00000113211.8	483	5	32	8	-3	-8	multi-exon	FALSE	canonical	3	10431	junction_4	1336.12412877696	1309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATTACCTGAAGTTTTT	NA	False	NA	67	True	ATTAAA	-8	NA	133486434	133488797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_133486469_133486826_133486933_133487259_133487328_133488199_133488323_133488685
ENSMUSG00000079435.10_1	chrX	+	410	4	FSM	ENSMUSG00000079435.10	ENSMUST00000172023.8	812	4	388	14	-13	-8	multi-exon	FALSE	canonical	3	10431	junction_3	1438.31622237794	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATTACCTGAAGTTTTT	NA	False	NA	67	True	ATTAAA	-8	NA	133486825	133488797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_133486933_133487259_133487328_133488199_133488323_133488685
ENSMUSG00000079442.13_1	chr2	+	2814	6	FSM	ENSMUSG00000079442.13	ENSMUST00000102818.11	3626	6	-14	826	-14	-203	multi-exon	FALSE	canonical	3	25	junction_4	7.22218803410712	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCCTGCCTCACCAGATT	NA	False	NA	NA	False	AATAAA	-12	NA	32477092	32488884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32477240_32477592_32477694_32479456_32479643_32484001_32484415_32485705_32485814_32487025
ENSMUSG00000079442.13_10	chr2	+	2846	5	ISM	ENSMUSG00000079442.13	ENSMUST00000102818.11	3626	6	-5	1997	-5	0	intron_retention	FALSE	canonical	3	25	junction_4	7.92148975887743	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTGTCTCTGTGGTAA	NA	False	NA	7	True	NA	NA	NA	32477101	32487713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32477240_32477592_32477694_32479456_32479643_32484001_32484415_32485705
ENSMUSG00000079442.13_11	chr2	+	3353	4	ISM	ENSMUSG00000079442.13	ENSMUST00000102818.11	3626	6	2383	6	1853	-6	3prime_fragment	FALSE	canonical	3	25	junction_2	5.79271573232759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAAGCTGTCAACCACTT	NA	False	NA	10	True	AATAAA	-12	NA	32479489	32489704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32479643_32484001_32484415_32485705_32485814_32487025
ENSMUSG00000079442.13_14	chr2	+	688	1	NIC	ENSMUSG00000079442.13	novel	3626	6	NA	NA	2735	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACACTGTGTCTCTGTGG	NA	False	NA	4	True	NA	NA	NA	32487022	32487710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_32487000_32487700
ENSMUSG00000079442.13_2	chr2	+	1987	5	FSM	ENSMUSG00000079442.13	ENSMUST00000179989.2	2826	5	-535	1374	-5	0	multi-exon	FALSE	canonical	3	25	junction_3	5.71729831301464	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTGTCTCTGTGGTAA	NA	False	NA	7	True	NA	NA	NA	32477101	32487713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32477694_32479456_32479643_32484001_32484415_32485705_32485814_32487025
ENSMUSG00000079442.13_6	chr2	+	4492	3	FSM	ENSMUSG00000079442.13	ENSMUST00000192934.2	3999	3	-493	0	-7	0	multi-exon	FALSE	canonical	3	39	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTGTCTCTGTGGTAA	NA	False	NA	7	True	NA	NA	NA	32477099	32487713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_32477694_32479456_32479643_32484001
ENSMUSG00000079442.13_7	chr2	+	1031	3	ISM	ENSMUSG00000079442.13	ENSMUST00000179989.2	2826	5	6543	1374	-108	0	3prime_fragment	FALSE	canonical	3	25	junction_1	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTGTCTCTGTGGTAA	NA	False	NA	7	True	NA	NA	NA	32484179	32487713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32484415_32485705_32485814_32487025
ENSMUSG00000079442.13_8	chr2	+	1736	1	ISM	ENSMUSG00000079442.13	ENSMUST00000102818.11	3626	6	10865	3	3684	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTGTCAACCACTTCCT	NA	False	NA	13	True	AATAAA	-15	NA	32487971	32489707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_32488000_32489700
ENSMUSG00000079444.10_0	chr17	-	509	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113302.10	749	3	142	98	27	-4	multi-exon	FALSE	canonical	3	3748	junction_1	369	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGACAGGTATTTTATTC	NA	False	NA	-16	True	AATAAA	-11	NA	47998966	47997668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_47997934_47998112_47998214_47998823
ENSMUSG00000079445.4_0	chr1	+	2340	2	FSM	ENSMUSG00000079445.4	ENSMUST00000113306.4	2582	2	230	12	-67	-12	multi-exon	FALSE	canonical	3	186	junction_1	0	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGTCTGAATTAGCTGC	NA	False	NA	24	True	AATAAA	-15	NA	86231185	86235015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_86231277_86232766
ENSMUSG00000079445.4_3	chr1	+	1819	1	ISM	ENSMUSG00000079445.4	ENSMUST00000113306.4	2582	2	2243	10	1946	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTGAATTAGCTGCTT	NA	False	NA	26	True	AATAAA	-17	NA	86233198	86235017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_86233200_86235000
ENSMUSG00000079467.9_0	chr19	-	1025	3	FSM	ENSMUSG00000079467.9	ENSMUST00000113496.2	518	3	-8	-499	-8	423	multi-exon	FALSE	canonical	2	2	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTCCTGGATTGCCCTGT	NA	False	NA	NA	False	AATAAA	-18	NA	6413797	6405128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6405871_6410689_6410812_6413636
ENSMUSG00000079469.11_0	chr9	-	2899	1	NIC	ENSMUSG00000079469.11	novel	6838	13	NA	NA	1018	1970	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGCCATATATTCAAGAG	NA	False	NA	-11	True	AATAAA	-12	NA	72921921	72919022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_72919000_72921900
ENSMUSG00000079469.11_11	chr9	-	2200	13	FSM	ENSMUSG00000079469.11	ENSMUST00000184035.8	3221	13	73	948	25	5	multi-exon	FALSE	non_canonical	3	4	junction_1	16.6088580783468	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCAAGTTGCTTCTGGT	NA	False	NA	-6	True	AATAAA	-18	NA	72946908	72921940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_72922474_72923430_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72929556_72929769_72930510_72930563_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
ENSMUSG00000079469.11_29	chr9	-	4171	11	NIC	ENSMUSG00000079469.11	novel	2193	12	NA	NA	18	63	intron_retention	FALSE	non_canonical	3	6	junction_5	16.9752761391384	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTCACTTAATTATATA	NA	False	NA	NA	False	ATTAAA	-7	NA	72946963	72920929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72929556_72929769_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
ENSMUSG00000079469.11_3	chr9	-	3152	12	FSM	ENSMUSG00000079469.11	ENSMUST00000098566.5	2193	12	78	-1037	30	5	multi-exon	FALSE	non_canonical	3	35	junction_5	10.1158577744251	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCAAGTTGCTTCTGGT	NA	False	NA	-6	True	AATAAA	-18	NA	72946903	72921940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72929556_72929769_72930510_72930563_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
ENSMUSG00000079469.11_4	chr9	-	3037	11	NIC	ENSMUSG00000079469.11	novel	2193	12	NA	NA	2	3	intron_retention	FALSE	non_canonical	0	0	junction_6	19.0580691571838	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAATCAAGTTGCTTCTG	NA	False	NA	-8	True	AATAAA	-16	NA	72946931	72921942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72929556_72929769_72930510_72930563_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
ENSMUSG00000079470.9_0	chr1	+	3627	3	FSM	ENSMUSG00000079470.9	ENSMUST00000053760.12	7393	3	-153	3919	-153	9	multi-exon	FALSE	canonical	2	10	junction_2	87	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTGACTACTGTCTTAA	NA	False	NA	8	True	NA	NA	NA	78635601	78645310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_78635821_78640857_78640998_78642042
ENSMUSG00000079470.9_1	chr1	+	3026	1	ISM	ENSMUSG00000079470.9	ENSMUST00000053760.12	7393	3	6521	3928	6119	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGCTGTCTCATTGACTA	NA	False	NA	-1	True	NA	NA	NA	78642275	78645301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_78642300_78645300
ENSMUSG00000079471.5_0	chr17	-	844	2	FSM	ENSMUSG00000079471.5	ENSMUST00000169137.3	616	2	54	-282	54	-1	multi-exon	FALSE	canonical	3	164	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGTGGTGGTGGCTTTTG	NA	False	NA	-6	True	AATAAA	-19	NA	45912838	45911897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_45912612_45912708
ENSMUSG00000079471.5_1	chr17	-	785	2	FSM	ENSMUSG00000079471.5	ENSMUST00000208801.2	437	2	33	-381	29	-1	multi-exon	FALSE	canonical	3	33	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGTGGTGGTGGCTTTTG	NA	False	NA	-6	True	AATAAA	-19	NA	45912863	45911897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_45912612_45912792
ENSMUSG00000079471.5_2	chr17	-	563	1	ISM	ENSMUSG00000079471.5	ENSMUST00000178858.3	804	2	533	1	432	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGTGGTGGTGGCTTTTG	NA	False	NA	-6	True	AATAAA	-19	NA	45912460	45911897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_45911900_45912500
ENSMUSG00000079477.10_0	chr6	-	2103	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	39	17	0	-6	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	2012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAGAACAAAGAACAGCT	NA	False	NA	NA	False	AATAAA	-5	NA	88022213	87976104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
ENSMUSG00000079477.10_2	chr6	-	2190	7	NIC	ENSMUSG00000079477.10	novel	1657	8	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	112	junction_6	799.58419749823	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAGAACAAAGAACAGCT	NA	False	NA	NA	False	AATAAA	-5	NA	88022213	87976104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87992613_87992701_88022054
ENSMUSG00000079478.10_0	chr19	-	668	4	FSM	ENSMUSG00000079478.10	ENSMUST00000159693.2	705	4	25	12	-8	-12	multi-exon	FALSE	canonical	0	0	junction_2	231.015631986717	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTCCTCCGCGTGGTTT	NA	False	NA	-13	True	AAAACA	-1	NA	5781735	5780346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5780741_5781268_5781354_5781466_5781624_5781703
ENSMUSG00000079478.10_1	chr19	-	1209	3	NIC	ENSMUSG00000079478.10	novel	705	4	NA	NA	-8	1	intron_retention	FALSE	canonical	0	0	junction_1	238	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTGTTCTTTCTTGGT	NA	False	NA	0	True	AAAACA	-14	NA	5781735	5780333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5781354_5781466_5781624_5781703
ENSMUSG00000079478.10_3	chr19	-	160	1	ISM	ENSMUSG00000118125.2	ENSMUST00000160852.8	2532	5	1246	2220	1246	-2220	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGGTTTGTTCTTTCTTG	NA	False	NA	-2	True	AAAACA	-12	NA	5780495	5780335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5780300_5780500
ENSMUSG00000079478.10_5	chr19	-	2993	4	NIC	ENSMUSG00000118125.2	novel	2532	5	NA	NA	14	0	intron_retention	FALSE	canonical	2	10	junction_1	217.355827056823	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGATTGCCTGGTTAAT	NA	False	NA	-2	True	AATAAA	-16	NA	5781727	5778115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_5780741_5781161_5781354_5781471_5781624_5781703
ENSMUSG00000079478.10_6	chr19	-	430	2	FSM	ENSMUSG00000079478.10	ENSMUST00000160141.2	826	2	377	19	192	-19	multi-exon	FALSE	canonical	3	503	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACAGTTTTTCCTCCGC	NA	False	NA	-20	True	NA	NA	NA	5781311	5780353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5780741_5781268
ENSMUSG00000079480.4_0	chrX	+	440	4	FSM	ENSMUSG00000079480.4	ENSMUST00000113627.4	489	4	46	3	46	0	multi-exon	FALSE	canonical	3	1046	junction_3	75.7495874576225	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAAGTGTTTTCTATTT	NA	False	NA	NA	False	AATAAA	-15	NA	101163098	101171272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_101163171_101165273_101165348_101170622_101170743_101171098
ENSMUSG00000079481.12_1	chrX	+	9926	4	NIC	ENSMUSG00000079481.12	novel	475	2	NA	NA	-208	-2281	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACAAAGGGCCTGGGAGTA	NA	False	NA	NA	False	NA	NA	NA	101048441	101133380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_101048750_101121087_101123404_101125294_101125428_101126211
ENSMUSG00000079481.12_2	chrX	+	9251	3	ISM	ENSMUSG00000079481.12	ENSMUST00000101339.8	12971	8	228466	2279	4909	-2279	3prime_fragment	FALSE	canonical	3	7	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGGGCCTGGGAGTAAC	NA	False	NA	NA	False	NA	NA	NA	101121456	101133382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_101123404_101125294_101125428_101126211
ENSMUSG00000079481.12_5	chrX	+	4826	1	ISM	ENSMUSG00000079481.12	ENSMUST00000101339.8	12971	8	237837	8	14280	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACCACTTTCTGCTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	101130827	101135653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_101130800_101135700
ENSMUSG00000079481.12_8	chrX	+	491	2	NNC	ENSMUSG00000079481.12	novel	475	2	NA	NA	-12	-35376	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTGCAGCGTTTGACTG	NA	False	NA	NA	False	ATTAAA	-22	NA	101048637	101080196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_101048750_101079817
ENSMUSG00000079481.12_9	chrX	+	3863	1	ISM	ENSMUSG00000079481.12	ENSMUST00000101339.8	12971	8	236585	2223	13028	-2223	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGATTCTTTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	101129575	101133438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_101129600_101133400
ENSMUSG00000079484.13_0	chr2	+	1294	12	FSM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	23	8	9	0	multi-exon	FALSE	canonical	2	23	junction_1	18.5338644710542	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATTTTATATGTAC	9940	False	NA	NA	False	AATAAA	-9	NA	30156755	30172152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_30156803_30156874_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUSG00000079484.13_12	chr2	+	4209	15	NIC	ENSMUSG00000099041.2	novel	4238	13	NA	NA	-2870	-8	intron_retention	FALSE	canonical	1	7	junction_4	23.5689392624951	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATTTTATATGTAC	NA	False	NA	NA	False	AATAAA	-9	NA	30127708	30172152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_30127818_30130580_30130690_30145179_30147345_30151859_30152439_30156874_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUSG00000079484.13_14	chr2	+	629	8	NIC	ENSMUSG00000079484.13	novel	751	9	NA	NA	-3	-9	combination_of_known_junctions	FALSE	canonical	2	21	junction_7	22.4844617549134	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTATATATGTTTTATG	NA	False	NA	NA	False	NA	NA	NA	30156871	30169529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169406
ENSMUSG00000079484.13_2	chr2	+	1287	11	ISM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	102	8	4	0	3prime_fragment	FALSE	canonical	2	39	junction_2	15.9185426468631	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATTTTATATGTAC	NA	False	NA	NA	False	AATAAA	-9	NA	30156834	30172152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUSG00000079484.13_6	chr2	+	1422	10	NIC	ENSMUSG00000079484.13	novel	1678	12	NA	NA	6	-1	intron_retention	FALSE	canonical	2	39	junction_2	16.779617264871	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATATGTACGGGTACT	NA	False	NA	NA	False	AATAAA	-16	NA	30156836	30172159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_30156954_30159700_30159860_30164481_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUSG00000079484.13_7	chr2	+	765	6	NIC	ENSMUSG00000079484.13	novel	751	9	NA	NA	-4	-1882	intron_retention	FALSE	canonical	2	39	junction_2	17.9888854574151	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCTGAGACTAGGCCCC	9927	False	NA	NA	False	NA	NA	NA	30156742	30167656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_30156954_30159700_30159860_30164481_30164736_30167014_30167071_30167159_30167223_30167634
ENSMUSG00000079487.12_5	chrX	+	6782	46	NIC	ENSMUSG00000079487.12	novel	6746	46	NA	NA	98	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_39	26.7088000479243	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGTTTTGTATATTATTT	NA	False	NA	-44	True	AATGAA	-37	NA	100317733	100340996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337228_100337398_100337477_100337563_100337619_100337693_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
ENSMUSG00000079487.12_7	chrX	+	6798	46	NIC	ENSMUSG00000079487.12	novel	6940	46	NA	NA	93	5	combination_of_known_junctions	TRUE	canonical	2	58	junction_41	20.6676941202185	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTTTGTATATTATTTAT	NA	False	NA	-42	True	AATGAA	-39	NA	100317728	100340998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337237_100337398_100337477_100337563_100337619_100337693_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
ENSMUSG00000079487.12_8	chrX	+	6848	45	NIC	ENSMUSG00000079487.12	novel	6809	45	NA	NA	98	-6	intron_retention	FALSE	canonical	0	0	junction_39	25.5291924945049	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGAACTGTTGGGTTTTGT	NA	False	NA	40	True	AATGAA	-28	NA	100317733	100340987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337228_100337398_100337477_100337563_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
ENSMUSG00000079487.12_9	chrX	+	6898	45	FSM	ENSMUSG00000079487.12	ENSMUST00000087948.11	6809	45	-136	47	94	31	multi-exon	FALSE	canonical	2	86	junction_14	18.8047135597997	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTAGAGCTGCTGCACTC	NA	False	NA	-16	True	NA	NA	NA	100317729	100341024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337237_100337398_100337477_100337563_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
ENSMUSG00000079497.5_10	chr2	-	5720	5	NNC	ENSMUSG00000079497.5	novel	1091	4	NA	NA	12	3878	intron_retention	TRUE	non_canonical	0	0	junction_2	9.65660395791398	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGTTTTCGTGTATCAA	NA	False	NA	NA	False	NA	NA	NA	29641685	29631052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_29631701_29631742_29631806_29632110_29636606_29637219_29637663_29641614
ENSMUSG00000079497.5_3	chr2	-	3936	3	NIC	ENSMUSG00000079497.5	novel	1091	4	NA	NA	11	1746	intron_retention	FALSE	canonical	3	10	junction_2	7.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAACCAGAAGAGAT	NA	False	NA	NA	False	AATAAA	-20	NA	29641686	29633184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_29636606_29637219_29637663_29641614
ENSMUSG00000079497.5_4	chr2	-	2809	4	FSM	ENSMUSG00000079497.5	ENSMUST00000129574.3	1091	4	28	-1746	28	1746	multi-exon	FALSE	canonical	3	10	junction_3	6.12825877028341	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAACCAGAAGAGAT	NA	False	NA	NA	False	AATAAA	-20	NA	29641669	29633184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_29635352_29636461_29636606_29637219_29637663_29641614
ENSMUSG00000079499.10_1	chr2	-	2661	1	ISM	ENSMUSG00000079499.10	ENSMUST00000155949.2	4301	2	5210	16	5210	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACGCACAAGGAAAATGAA	NA	False	NA	NA	False	AATAAA	-19	NA	29137795	29135134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_29135100_29137800
ENSMUSG00000079502.9_0	chr2	-	4116	5	ISM	ENSMUSG00000079502.9	ENSMUST00000189711.7	1759	6	-16	25702	4	2715	5prime_fragment	FALSE	canonical	1	3	junction_3	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CATAGAAAGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	28945067	28842666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_28846109_28852643_28852750_28874307_28874534_28875813_28875914_28944825
ENSMUSG00000079502.9_2	chr2	-	1176	6	FSM	ENSMUSG00000079502.9	ENSMUST00000157048.4	1042	6	49	-183	7	183	multi-exon	FALSE	canonical	1	3	junction_4	3.07245829914744	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCAAGCTGCGCTCTGGCT	NA	False	NA	NA	False	AATAAA	-12	NA	28945029	28845198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_28845637_28846006_28846109_28852643_28852750_28874307_28874534_28875813_28875914_28944825
ENSMUSG00000079508.9_0	chrX	+	902	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113898.8	784	9	8	-126	8	-6	multi-exon	FALSE	canonical	3	325	junction_1	51.8975854447969	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAAGCTGGCCTGCTTTC	NA	False	NA	NA	False	ATTAAA	-12	NA	93410730	93460693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_93410769_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
ENSMUSG00000079508.9_1	chrX	+	795	8	ISM	ENSMUSG00000079508.9	ENSMUST00000113898.8	784	9	8	4297	8	-4297	5prime_fragment	FALSE	canonical	3	325	junction_1	49.0588983794386	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATAAGGCTCATGTTTA	NA	False	NA	NA	False	NA	NA	NA	93410730	93456270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_93410769_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065
ENSMUSG00000079508.9_13	chrX	+	2991	1	NIC	ENSMUSG00000079508.9	novel	1218	9	NA	NA	46914	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAAGCTGGCCTGCTTTC	NA	False	NA	NA	False	ATTAAA	-12	NA	93457702	93460693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_93457700_93460700
ENSMUSG00000079508.9_9	chrX	+	866	8	ISM	ENSMUSG00000079508.9	ENSMUST00000113895.2	1173	9	12741	6	12741	-6	3prime_fragment	FALSE	canonical	3	367	junction_7	35.2043596558084	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAAGCTGGCCTGCTTTC	NA	False	NA	NA	False	ATTAAA	-12	NA	93423529	93460693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
ENSMUSG00000079509.11_12	chrX	-	5197	8	NIC	ENSMUSG00000079509.11	novel	7002	9	NA	NA	4	-1375	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	40.1629334646985	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCATCCCCCTATTTC	NA	False	NA	NA	False	AATAAA	-18	NA	93166734	93119612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93141888_93142459_93145896_93145987_93157801_93157870_93166673
ENSMUSG00000079509.11_3	chrX	-	3054	1	ISM	ENSMUSG00000079509.11	ENSMUST00000088102.12	7002	9	45717	6	45210	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTACCCTAGTGGAGTGT	NA	False	NA	-7	True	AATAAA	-16	NA	93121296	93118242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_93118200_93121300
ENSMUSG00000079509.11_5	chrX	-	5351	9	FSM	ENSMUSG00000079509.11	ENSMUST00000088102.12	7002	9	273	1378	-2	-1377	multi-exon	FALSE	canonical	3	51	junction_8	23.8298001460356	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTTCATCCCCCTATT	NA	False	NA	98	True	AATAAA	-16	NA	93166740	93119614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93157801_93157870_93166673
ENSMUSG00000079509.11_6	chrX	-	5519	8	NNC	ENSMUSG00000079509.11	novel	6762	8	NA	NA	-26931	-1160	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_7	39.1371215818727	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGCATCTCTGATTCCTG	NA	False	NA	NA	False	NA	NA	NA	93194239	93119397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93194153
ENSMUSG00000079509.11_7	chrX	-	6283	6	ISM	ENSMUSG00000079509.11	ENSMUST00000113926.8	6762	8	24263	5	24263	-5	3prime_fragment	FALSE	canonical	3	94	junction_5	11.443775600736	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTACCCTAGTGGAGTGT	NA	False	NA	-7	True	AATAAA	-16	NA	93142243	93118242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888
ENSMUSG00000079509.11_8	chrX	-	5288	8	FSM	ENSMUSG00000079509.11	ENSMUST00000113927.8	6933	8	268	1377	-7	-1377	multi-exon	FALSE	canonical	3	21	junction_7	34.1317973719043	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTTCATCCCCCTATT	NA	False	NA	98	True	AATAAA	-16	NA	93166745	93119614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93166673
ENSMUSG00000079511.9_3	chr6	+	3667	11	NIC	ENSMUSG00000079511.9	novel	3628	12	NA	NA	-33	-7	intron_retention	FALSE	canonical	2	2	junction_2	302.917629067705	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGCTATTTTTCTC	200	False	NA	NA	False	ATTAAA	-12	NA	83078564	83086913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_83079620_83079938_83080026_83080100_83080251_83080382_83080514_83080592_83080707_83084033_83084149_83084435_83084614_83084735_83084936_83085071_83086185_83086294_83086408_83086502
ENSMUSG00000079511.9_5	chr6	+	630	3	FSM	ENSMUSG00000030037.10	ENSMUST00000113938.5	695	3	58	7	-22	-7	multi-exon	FALSE	canonical	3	747	junction_2	17.5	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGCTATTTTTCTC	7441	False	NA	NA	False	ATTAAA	-12	NA	83086078	83086913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83086185_83086294_83086408_83086502
ENSMUSG00000079523.9_0	chr6	-	474	3	FSM	ENSMUSG00000079523.9	ENSMUST00000114050.8	570	3	90	6	1	0	multi-exon	FALSE	canonical	3	26814	junction_1	200.5	4698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935381	72934335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72934636_72934895_72935008_72935319
ENSMUSG00000079523.9_1	chr6	-	516	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	174	0	174	0	multi-exon	FALSE	canonical	3	26814	junction_1	0	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935111	72934335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_72934636_72934895
ENSMUSG00000079536.2_1	chrX	-	901	3	FSM	ENSMUSG00000079536.2	ENSMUST00000114125.2	627	3	-119	-155	-119	155	multi-exon	FALSE	canonical	3	15	junction_1	3.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAGCAAATATTTTT	NA	False	NA	NA	False	TTTAAA	-17	NA	73525124	73523737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_73524038_73524213_73524343_73524652
ENSMUSG00000079547.5_0	chr17	+	1286	6	FSM	ENSMUSG00000079547.5	ENSMUST00000114232.4	1404	6	111	7	111	-7	multi-exon	FALSE	canonical	3	11	junction_3	6.61513416341649	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCCCAAGTTTGTCC	NA	False	NA	NA	False	AATAAA	-14	NA	34372156	34379197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_34372428_34374406_34374689_34376219_34376505_34378317_34378435_34378602_34378639_34378902
ENSMUSG00000079553.12_0	chr17	-	2285	11	FSM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	56	16	-1	-7	multi-exon	FALSE	canonical	1	168	junction_4	135.039586788467	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTAATCTTTTTCTTG	9749	False	NA	-23	True	AATAAA	-10	NA	34109579	34094648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
ENSMUSG00000079553.12_2	chr17	-	1030	5	ISM	ENSMUSG00000079553.12	ENSMUST00000114361.9	2260	12	7141	7	-266	-7	3prime_fragment	FALSE	canonical	1	168	junction_4	197.639191457565	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTAATCTTTTTCTTG	NA	False	NA	-23	True	AATAAA	-10	NA	34102466	34094648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072
ENSMUSG00000079553.12_6	chr17	-	1698	6	ISM	ENSMUSG00000079553.12	ENSMUST00000114361.9	2260	12	5769	1	-1638	-1	intron_retention	FALSE	canonical	1	168	junction_4	179.268067429757	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATCTTTTTCTTGTTTGTT	NA	False	NA	-17	True	AATAAA	-16	NA	34103838	34094642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562
ENSMUSG00000079555.3_1	chr5	-	1946	5	FSM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	88	39	-6	-39	multi-exon	FALSE	canonical	3	397	junction_4	45.778679535347	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGACTGAAGAGTTCTAA	9414	False	NA	-39	True	AATAAA	-12	NA	34326783	34311262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748_34325788_34326733
ENSMUSG00000079555.3_2	chr5	-	1903	4	ISM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	1082	34	988	-34	3prime_fragment	FALSE	canonical	3	453	junction_3	32.3144274623924	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGAAGAGTTCTAAAAACG	NA	False	NA	-34	True	AATAAA	-17	NA	34325789	34311257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748
ENSMUSG00000079557.12_3	chr17	-	1382	5	FSM	ENSMUSG00000079557.12	ENSMUST00000172767.9	1398	5	8	8	-5	-8	multi-exon	FALSE	canonical	3	227	junction_1	25.5196003103497	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCATCAGTTATGTTTCTA	2684	False	NA	-19	True	AATAAA	-25	NA	33937636	33910496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33911128_33915010_33915221_33921986_33922183_33928718_33928947_33937519
ENSMUSG00000079557.12_4	chr17	-	1432	5	FSM	ENSMUSG00000079557.12	ENSMUST00000173015.8	1418	5	-22	8	-5	-8	multi-exon	FALSE	canonical	3	31	junction_1	109.184476918654	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCATCAGTTATGTTTCTA	2684	False	NA	-19	True	AATAAA	-25	NA	33937636	33910496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33911178_33915010_33915221_33921986_33922183_33928718_33928947_33937519
ENSMUSG00000079557.12_5	chr17	-	1506	6	NIC	ENSMUSG00000079557.12	novel	1398	5	NA	NA	-5	-4	combination_of_known_junctions	FALSE	canonical	3	18	junction_5	123.474045855799	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTTATGTTTCTAAGCT	2684	False	NA	-15	True	AATAAA	-29	NA	33937636	33910492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_33911128_33915010_33915221_33921986_33922183_33928718_33928947_33934916_33935037_33937519
ENSMUSG00000079557.12_7	chr17	-	5258	4	FSM	ENSMUSG00000079557.12	ENSMUST00000173329.8	2566	4	-5	-2687	-5	-15	multi-exon	FALSE	canonical	3	268	junction_3	10.1434160364686	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGGACGCATCAGTTAT	2684	False	NA	-26	True	AATAAA	-18	NA	33937636	33910503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33915221_33921986_33922183_33928718_33928947_33937519
ENSMUSG00000079562.8_1	chr5	+	2132	9	FSM	ENSMUSG00000079562.8	ENSMUST00000114449.7	2193	9	57	4	1	-4	multi-exon	FALSE	canonical	3	507	junction_4	39.7106723690244	945	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTGTGTGAGGTGTTT	NA	False	NA	16	True	AATAAA	-17	NA	33492909	33530636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
ENSMUSG00000079577.2_0	chrX	+	1621	9	NNC	ENSMUSG00000079577.2	novel	782	8	NA	NA	-864	678	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	9.9365172470036	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTGAAATATGTCAATTAA	NA	False	NA	NA	False	AATAAA	-22	NA	66738439	66750634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_66738557_66739259_66739413_66739880_66739951_66740099_66740135_66741912_66742031_66742916_66743017_66743790_66743890_66749598_66749704_66749810
ENSMUSG00000079577.2_3	chrX	+	2264	8	FSM	ENSMUSG00000079577.2	ENSMUST00000114672.2	782	8	-805	-677	-805	677	multi-exon	FALSE	canonical	3	52	junction_3	6.1842459491181	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTTGAAATATGTCAATTA	NA	False	NA	NA	False	AATAAA	-21	NA	66738498	66750633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_66739413_66739880_66739951_66740099_66740135_66741912_66742031_66742916_66743017_66743790_66743890_66749598_66749704_66749810
ENSMUSG00000079578.2_0	chrX	-	1623	9	NNC	ENSMUSG00000079578.2	novel	782	8	NA	NA	-869	677	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_8	9.82264602843857	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTTGAAATATGTCAATTA	NA	False	NA	NA	False	AATAAA	-21	NA	66738037	66725828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_66726652_66726758_66726864_66732572_66732672_66733445_66733546_66734431_66734550_66736337_66736373_66736521_66736592_66737059_66737213_66737917
ENSMUSG00000079584.3_1	chrX	+	2155	17	FSM	ENSMUSG00000079584.3	ENSMUST00000114725.3	2156	17	2	-1	2	1	multi-exon	FALSE	canonical	1	199	junction_7	106.775300719548	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAACCTCCCTGTCTGGCC	NA	False	NA	10	True	TATAAA	-3	NA	56454515	56534128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468737_56478568_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
ENSMUSG00000079584.3_2	chrX	+	2154	17	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	151.271641013774	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAAACCTCCCTGTCTGG	NA	False	NA	8	True	TATAAA	-1	NA	56454515	56534126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468741_56478571_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
ENSMUSG00000079598.5_0	chr6	+	1427	5	FSM	ENSMUSG00000079598.5	ENSMUST00000114874.5	1431	5	-11	15	-11	-15	multi-exon	FALSE	canonical	0	0	junction_1	2.12132034355964	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGCATCTCTGAGTCTG	NA	False	NA	NA	False	AATAAA	-5	NA	38639990	38657785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_38640352_38650377_38650453_38653731_38653899_38654443_38654545_38657062
ENSMUSG00000079610.10_0	chr1	-	832	4	FSM	ENSMUSG00000079610.10	ENSMUST00000001172.12	2109	4	231	1046	5	220	multi-exon	FALSE	canonical	3	48	junction_3	11.5566238822398	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCACATGGGCAAAGATAAA	7031	False	NA	-9	True	AATAAA	-18	NA	36586295	36578220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36586166
ENSMUSG00000079610.10_1	chr1	-	1960	4	FSM	ENSMUSG00000079610.10	ENSMUST00000207843.2	2646	4	20	666	20	-79	multi-exon	FALSE	canonical	3	9	junction_3	29.9369708257569	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACTTGCCTTAAGTAGC	7046	False	NA	-2	True	ATTAAA	-15	NA	36586280	36577253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36585990
ENSMUSG00000079610.10_2	chr1	-	880	4	FSM	ENSMUSG00000079610.10	ENSMUST00000194894.4	664	4	4	-220	4	220	multi-exon	FALSE	canonical	3	25	junction_1	19.6015872373189	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCACATGGGCAAAGATAAA	7018	False	NA	-9	True	AATAAA	-18	NA	36586308	36578220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36578616_36580904_36581144_36581842_36581947_36586166
ENSMUSG00000079610.10_5	chr1	-	2664	4	NIC	ENSMUSG00000079610.10	novel	2646	4	NA	NA	16	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	27.1947707391615	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	7042	False	NA	NA	False	NA	NA	NA	36586284	36576588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_36578616_36580904_36581144_36581842_36581947_36585990
ENSMUSG00000079614.5_0	chr18	+	3289	9	FSM	ENSMUSG00000079614.5	ENSMUST00000025421.9	3542	9	122	131	23	-131	multi-exon	FALSE	canonical	3	1509	junction_8	173.331285043987	2349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGATATTTTTGTCTTT	NA	False	NA	15	True	AATAAA	-28	NA	67908067	67928426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
ENSMUSG00000079614.5_10	chr18	+	2670	8	FSM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	23	-1009	23	1009	multi-exon	FALSE	canonical	3	1621	junction_6	144.078210053585	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGTGGTAATGTGT	NA	False	NA	10	True	AATAAA	-16	NA	67908067	67926672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933
ENSMUSG00000079627.3_0	chrX	-	795	4	FSM	ENSMUSG00000079627.3	ENSMUST00000115162.2	779	4	-14	-2	-14	2	multi-exon	FALSE	canonical	3	6	junction_3	11.2644968324772	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACATTTGTTTTGTGCTT	9215	False	NA	NA	False	AATAAA	-14	NA	36854944	36850647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36850876_36852672_36852719_36854261_36854674_36854835
ENSMUSG00000079628.4_2	chrX	-	946	4	FSM	ENSMUSG00000079628.4	ENSMUST00000115166.3	979	4	22	11	22	-11	multi-exon	FALSE	canonical	3	17	junction_1	1.24721912892465	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTACTTTGACTCATGTGT	6390	False	NA	NA	False	AATAAA	-10	NA	36832958	36828163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36828390_36829677_36829724_36832090_36832497_36832690
ENSMUSG00000079629.6_0	chrX	-	793	4	FSM	ENSMUSG00000079629.6	ENSMUST00000115169.4	795	4	4	-2	4	0	multi-exon	FALSE	canonical	2	5	junction_2	7.03957069398096	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATATTTGTTTTGTGCTT	NA	False	NA	NA	False	AATAAA	-14	NA	36825119	36820767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36820996_36822809_36822856_36824438_36824851_36825012
ENSMUSG00000079629.6_3	chrX	-	958	3	ISM	ENSMUSG00000079629.6	ENSMUST00000115169.4	795	4	5	-6	5	4	intron_retention	FALSE	canonical	2	5	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36825118	36820763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_36820996_36822809_36822856_36824438
ENSMUSG00000079637.11_1	chrX	+	797	4	FSM	ENSMUSG00000079637.11	ENSMUST00000115190.11	762	4	-36	1	-36	-1	multi-exon	FALSE	canonical	3	17	junction_3	17.9133717900592	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATATTTGTTTTGTGCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	36635296	36640031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36635407_36635568_36635981_36637508_36637555_36639802
ENSMUSG00000079637.11_3	chrX	+	846	5	FSM	ENSMUSG00000079637.11	ENSMUST00000184688.8	720	5	-34	-92	-34	1	multi-exon	FALSE	canonical	2	3	junction_3	22.1585198061603	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTGTTTTGTGCTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	36635298	36640033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36635407_36635568_36635981_36637508_36637555_36637822_36637872_36639802
ENSMUSG00000079638.9_0	chrX	+	940	3	NIC	ENSMUSG00000079638.9	novel	799	4	NA	NA	17	-4	intron_retention	FALSE	canonical	3	16	junction_2	18.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATATATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36593736	36598455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_36594405_36595944_36595991_36598229
ENSMUSG00000079638.9_4	chrX	+	793	4	FSM	ENSMUSG00000079638.9	ENSMUST00000115191.7	799	4	5	1	5	-1	multi-exon	FALSE	canonical	3	16	junction_3	23.6126143312331	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATATTTGTTTTGTGCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	36593724	36598458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36593831_36593992_36594405_36595944_36595991_36598229
ENSMUSG00000079641.4_0	chrX	-	353	3	FSM	ENSMUSG00000079641.4	ENSMUST00000115231.4	612	3	220	39	-16	-39	multi-exon	FALSE	canonical	3	12849	junction_1	35	1661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCTTTTCTGGTTTAT	NA	False	NA	-9	True	AATAAA	-15	NA	36348835	36346211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36346403_36347637_36347742_36348777
ENSMUSG00000079641.4_1	chrX	-	149	1	ISM	ENSMUSG00000079641.4	ENSMUST00000115231.4	612	3	2695	39	2449	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCTTTTCTGGTTTAT	NA	False	NA	-9	True	AATAAA	-15	NA	36346360	36346211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_36346200_36346400
ENSMUSG00000079654.4_0	chr6	-	3652	5	NNC	ENSMUSG00000079654.4	novel	3411	5	NA	NA	194	1	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_4	5.1234753829798	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTTCTGACCTTCTTG	264	False	NA	NA	False	AATAAA	-15	NA	29179389	29169229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_29171568_29176440_29176567_29176901_29177007_29177115_29177831_29179021
ENSMUSG00000079654.4_1	chr6	-	3434	5	FSM	ENSMUSG00000079654.4	ENSMUST00000159200.2	3411	5	-27	4	-27	-4	multi-exon	FALSE	canonical	3	12	junction_2	1.4790199457749	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGAGAATGTTCTGACCT	43	False	NA	NA	False	AATAAA	-10	NA	29179610	29169234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_29171568_29176440_29176567_29176901_29177007_29177115_29177831_29179455
ENSMUSG00000079654.4_2	chr6	-	1967	1	ISM	ENSMUSG00000079654.4	ENSMUST00000159200.2	3411	5	8384	2	8384	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGAATGTTCTGACCTTC	8454	False	NA	NA	False	AATAAA	-12	NA	29171199	29169232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_29169200_29171200
ENSMUSG00000079657.11_1	chr17	-	1395	9	FSM	ENSMUSG00000079657.11	ENSMUST00000035797.16	1575	9	169	11	-7	0	multi-exon	FALSE	canonical	3	65	junction_8	7.78520230951001	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752693	24748038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24748618_24748714_24748792_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ENSMUSG00000079657.11_2	chr17	-	1755	7	NIC	ENSMUSG00000079657.11	novel	1658	8	NA	NA	0	1	intron_retention	FALSE	canonical	3	65	junction_6	8.12403840463596	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTGTCATCTGTGGAAA	NA	False	NA	-12	True	AATAAA	-13	NA	24752686	24748037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24748618_24748714_24748945_24749028_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ENSMUSG00000079657.11_3	chr17	-	1595	7	NIC	ENSMUSG00000079657.11	novel	1575	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	65	junction_6	8.80656320908194	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752700	24748038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ENSMUSG00000079657.11_4	chr17	-	1315	8	NIC	ENSMUSG00000079657.11	novel	1575	9	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	28.0393309769091	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752690	24748038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24748618_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ENSMUSG00000079657.11_5	chr17	-	1874	6	NIC	ENSMUSG00000079657.11	novel	1658	8	NA	NA	-9	0	intron_retention	FALSE	canonical	3	65	junction_5	8.88594395660922	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752709	24748038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24748945_24749028_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ENSMUSG00000079657.11_7	chr17	-	1486	8	NIC	ENSMUSG00000079657.11	novel	1575	9	NA	NA	-2	0	intron_retention	FALSE	canonical	3	65	junction_7	8.15412753876019	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752688	24748038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24748618_24748714_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ENSMUSG00000079658.10_0	chr1	-	480	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	1	479	1	-55	multi-exon	TRUE	canonical	3	1066	junction_3	717.825574603995	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCTGTAGTTCAGTTAG	NA	False	NA	-3	True	AATAAA	-38	NA	16727265	16713469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
ENSMUSG00000079658.10_1	chr1	-	492	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	1	1521	1	-55	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCTGTAGTTCAGTTAG	NA	False	NA	-3	True	AATAAA	-38	NA	16727107	16713469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
ENSMUSG00000079658.10_6	chr1	-	524	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186948.7	641	4	6	111	6	-62	multi-exon	FALSE	canonical	3	147	junction_3	1146.38165062465	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATTTAATACCTGTAGTT	NA	False	NA	-10	True	AATAAA	-31	NA	16727236	16713476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727135
ENSMUSG00000079659.6_0	chr5	+	1061	5	FSM	ENSMUSG00000079659.6	ENSMUST00000115365.3	1040	5	-28	7	-28	-7	multi-exon	FALSE	canonical	3	208	junction_1	62.4019230472908	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTCCTTTTTTTTTC	NA	False	NA	3	True	AATAAA	-14	NA	9150718	9169038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_9150860_9151216_9151396_9166479_9166531_9167458_9167564_9168453
ENSMUSG00000079659.6_3	chr5	+	1378	4	NIC	ENSMUSG00000079659.6	novel	1040	5	NA	NA	10	-9	intron_retention	FALSE	canonical	3	350	junction_1	2.82842712474619	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAAGTTTCCTTTTTTTT	NA	False	NA	1	True	AATAAA	-12	NA	9150756	9169036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_9151396_9166479_9166531_9167458_9167564_9168453
ENSMUSG00000079659.6_5	chr5	+	1920	4	ISM	ENSMUSG00000079659.6	ENSMUST00000115365.3	1040	5	1	9	1	-9	intron_retention	FALSE	canonical	3	208	junction_1	66.9394419523265	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAAGTTTCCTTTTTTTT	NA	False	NA	1	True	AATAAA	-12	NA	9150747	9169036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_9150860_9151216_9151396_9166479_9166531_9167458
ENSMUSG00000079659.6_6	chr5	+	171	1	FSM	ENSMUSG00000079659.6	ENSMUST00000200542.2	5254	1	3593	1490	3593	1416	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAACAAAAATACCAA	NA	False	NA	NA	False	NA	NA	NA	9209325	9209496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_9209300_9209500
ENSMUSG00000079677.3_0	chr9	-	789	5	FSM	ENSMUSG00000079677.3	ENSMUST00000010348.7	812	5	23	0	1	0	multi-exon	FALSE	canonical	3	216	junction_3	56.6171352154098	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984817	20978815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559_20984615_20984684
ENSMUSG00000079677.3_1	chr9	-	871	4	FSM	ENSMUSG00000079677.3	ENSMUST00000215631.2	681	4	-15	-175	1	0	multi-exon	FALSE	canonical	3	225	junction_3	51.1881062574327	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984817	20978815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20979222_20979325_20979414_20984370_20984615_20984684
ENSMUSG00000079677.3_5	chr9	-	717	4	NIC	ENSMUSG00000079677.3	novel	812	5	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_3	142.14312036348	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984800	20978815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_20979222_20979325_20979414_20984370_20984478_20984684
ENSMUSG00000079681.4_0	chr9	-	1026	5	FSM	ENSMUSG00000079681.4	ENSMUST00000115494.3	1010	5	-21	5	-21	-3	multi-exon	FALSE	canonical	3	10	junction_1	4.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGATTATTTTTAATTAT	900	False	NA	NA	False	AATAAA	-16	NA	20978410	20973693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20974014_20974189_20974284_20974609_20974693_20977319_20977674_20978235
ENSMUSG00000079685.11_1	chr10	-	2898	1	ISM	ENSMUSG00000079685.11	ENSMUST00000218087.2	5959	5	30098	4	30078	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAACTTTGTCTGTTCTCTT	NA	False	NA	-5	True	ATTAAA	-12	NA	7393263	7390365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_7390400_7393300
ENSMUSG00000079685.11_13	chr10	-	5704	4	ISM	ENSMUSG00000079685.11	ENSMUST00000218087.2	5959	5	16888	5	16868	-5	3prime_fragment	FALSE	canonical	3	25	junction_3	16.8193010820572	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAACTTTGTCTGTTCTCT	NA	False	NA	-6	True	ATTAAA	-11	NA	7406473	7390366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_7395698_7396417_7396553_7397380_7397485_7406339
ENSMUSG00000079685.11_2	chr10	-	6432	6	FSM	ENSMUSG00000079685.11	ENSMUST00000177585.9	3815	6	54	-2671	3	-5	multi-exon	FALSE	canonical	3	25	junction_3	15.4324333790883	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAACTTTGTCTGTTCTCT	NA	False	NA	-6	True	ATTAAA	-11	NA	7423584	7390366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_7395698_7396417_7396553_7397380_7397485_7406339_7406616_7406953_7407209_7423253
ENSMUSG00000079685.11_4	chr10	-	5897	4	NIC	ENSMUSG00000079685.11	novel	5959	5	NA	NA	7	-5	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	26.1576417557513	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAACTTTGTCTGTTCTCT	NA	False	NA	-6	True	ATTAAA	-11	NA	7423580	7390366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_7395698_7396417_7396553_7397380_7397485_7423253
ENSMUSG00000079710.11_0	chr17	-	3933	3	NIC	ENSMUSG00000079710.11	novel	747	5	NA	NA	27	0	intron_retention	TRUE	canonical	3	27	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTGAGCCTCGTGTTAC	8905	False	NA	NA	False	AATAAA	-13	NA	15230404	15216048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_15219560_15222241_15222449_15230189
ENSMUSG00000079710.11_1	chr17	-	749	4	FSM	ENSMUSG00000079710.11	ENSMUST00000179539.9	752	4	28	-25	15	-4	multi-exon	FALSE	canonical	3	14	junction_1	7.25718035235908	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGATCTGTGAGCCTCGTG	8893	False	NA	NA	False	AATAAA	-9	NA	15230416	15216052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_15216212_15219403_15219560_15222241_15222449_15230189
ENSMUSG00000079710.11_2	chr17	-	1521	1	FSM	ENSMUSG00000079710.11	ENSMUST00000232299.2	2253	1	462	270	462	-270	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGTCTCTCAAGCATATG	9340	False	NA	NA	False	ATTAAA	-14	NA	15229969	15228448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_15228400_15230000
ENSMUSG00000079737.5_0	chr16	+	1638	2	FSM	ENSMUSG00000079737.5	ENSMUST00000035426.7	1611	2	-30	3	-30	-3	multi-exon	FALSE	canonical	3	37	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAACTGGTACTTTGGTA	NA	False	NA	NA	False	ATTAAA	-29	NA	13489853	13496246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13489943_13494697
ENSMUSG00000079737.5_1	chr16	+	1001	1	FSM	ENSMUSG00000079737.5	ENSMUST00000223666.2	939	1	245	-307	245	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGTTAGGATTCGAGT	NA	False	NA	NA	False	AGTAAA	-12	NA	13495147	13496148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13495100_13496100
ENSMUSG00000079845.9_11	chrX	-	1158	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-9	-1	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_7	100.580502583751	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	NA	False	AATAAA	-15	NA	72126093	72117951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125626_72125674_72125964
ENSMUSG00000079845.9_2	chrX	-	626	4	ISM	ENSMUSG00000079845.9	ENSMUST00000078775.13	1162	9	4397	-1	1385	1	3prime_fragment	FALSE	canonical	3	118	junction_2	25.4950975679639	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	72121687	72117949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630
ENSMUSG00000079845.9_3	chrX	-	1193	9	FSM	ENSMUSG00000079845.9	ENSMUST00000078775.13	1162	9	-32	1	-32	-1	multi-exon	FALSE	canonical	3	52	junction_8	89.7743699504486	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	NA	False	AATAAA	-15	NA	72126116	72117951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125988
ENSMUSG00000079845.9_5	chrX	-	1147	9	NIC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-22	-1	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	103.290548938419	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	NA	False	AATAAA	-15	NA	72126106	72117951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125626_72125674_72125988
ENSMUSG00000079845.9_6	chrX	-	1196	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_8	86.1506674379253	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	NA	False	AATAAA	-15	NA	72126095	72117951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125964
ENSMUSG00000079871.5_0	chrX	+	635	1	FSM	ENSMUSG00000079871.5	ENSMUST00000115987.3	360	1	-135	-140	-135	140	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGCCATCAAAT	NA	False	NA	NA	False	TTTAAA	-16	NA	12518406	12519041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_12518400_12519000
ENSMUSG00000079941.2_0	chr13	-	485	1	FSM	ENSMUSG00000079941.2	ENSMUST00000044043.3	390	1	-19	-76	-19	76	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-27	NA	21685607	21685122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_21685100_21685600
ENSMUSG00000080058.3_0	chr8	-	2216	2	FSM	ENSMUSG00000080058.3	ENSMUST00000211380.2	408	2	-390	-1418	1	1418	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCGGTTTCAGTTAT	NA	False	NA	NA	False	AATATA	-12	NA	71152728	71150392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_71152145_71152264
ENSMUSG00000080069.3_0	chrX	-	1496	2	Genic_Genomic	ENSMUSG00000080069.3	novel	1023	1	NA	NA	-9148	370	multi-exon	FALSE	canonical	3	24	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTCAATCACAATGAC	NA	False	NA	NA	False	TATAAA	-40	NA	85398599	85388058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_85389457_85398501
ENSMUSG00000080241.4_0	chrX	-	816	1	FSM	ENSMUSG00000080241.4	ENSMUST00000116499.4	451	1	-98	-267	-98	267	mono-exon	FALSE	NA	NA	NA	NA	NA	470	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGCTTGAAAAAAAAAAAAGA	NA	False	NA	-1	True	AATAAA	-13	NA	36807848	36807032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36807000_36807800
ENSMUSG00000080268.5_1	chr19	+	1452	10	NIC	ENSMUSG00000080268.5	novel	1388	10	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	76.2029454082248	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGGTGTGGCTGATGTG	2781	False	NA	2	True	AATAAA	-13	NA	5091432	5099939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_5091640_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
ENSMUSG00000080316.12_0	chr17	+	2056	1	FSM	ENSMUSG00000080316.12	ENSMUST00000178888.2	500	1	-1560	4	-492	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTCGTGGGTGTTTGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	18057273	18059329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_18057300_18059300
ENSMUSG00000080717.11_0	chr16	+	4479	5	NNC	ENSMUSG00000080717.11	novel	669	6	NA	NA	2	-1310	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	52.3754474921217	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCTGTTAGTTTCCATG	NA	False	NA	4	True	NA	NA	NA	97798528	97815840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97812745_97813083
ENSMUSG00000080717.11_16	chr16	+	395	3	FSM	ENSMUSG00000080717.11	ENSMUST00000122450.8	1298	3	-8	911	0	81	multi-exon	FALSE	canonical	3	115	junction_2	8.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGGCACTACTTTAA	NA	False	NA	NA	False	NA	NA	NA	97798514	97810289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_97798637_97809828_97809956_97810143
ENSMUSG00000080717.11_2	chr16	+	540	5	FSM	ENSMUSG00000080717.11	ENSMUST00000232387.2	546	5	4	2	-3	-2	multi-exon	FALSE	canonical	3	19	junction_4	48.9508682251909	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGACTGTCTTAGCTAC	NA	False	NA	NA	False	NA	NA	NA	97798530	97832634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97832442
ENSMUSG00000080717.11_3	chr16	+	496	4	ISM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	-14	5806	-3	309	5prime_fragment	FALSE	canonical	3	112	junction_3	8.80656320908194	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATGCAATCAATATGGT	NA	False	NA	NA	False	NA	NA	NA	97798519	97811509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318
ENSMUSG00000080717.11_4	chr16	+	1316	6	FSM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	-9	-638	1	-3	multi-exon	FALSE	canonical	2	6	junction_4	50.8409283943557	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGCCTTGGTCATGGT	NA	False	NA	11	True	NA	NA	NA	97798524	97817953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97811369_97816865_97816920_97817041
ENSMUSG00000080717.11_5	chr16	+	1262	5	FSM	ENSMUSG00000080717.11	ENSMUST00000231913.2	1230	5	-33	1	-3	-1	multi-exon	FALSE	canonical	3	30	junction_4	45.9292934846597	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCCTTGGTCATGGTAT	NA	False	NA	13	True	NA	NA	NA	97798530	97817955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97817041
ENSMUSG00000080776.2_0	chr11	+	176	1	FSM	ENSMUSG00000080776.2	ENSMUST00000119853.2	813	1	692	-55	692	55	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCAAATTGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-14	NA	46619336	46619512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_46619300_46619500
ENSMUSG00000080811.2_0	chrX	-	163	1	FSM	ENSMUSG00000080811.2	ENSMUST00000117403.2	123	1	25	-65	25	65	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAGAAAAAAATGTTCC	NA	False	NA	NA	False	AATAAA	-7	NA	11550338	11550175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_11550200_11550300
ENSMUSG00000080848.4_0	chr9	-	541	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	-24	-45	-24	45	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGAC	NA	False	NA	-18	True	AATAAA	-17	NA	115870156	115869615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_115869600_115870200
ENSMUSG00000080859.2_0	chr2	-	718	1	FSM	ENSMUSG00000080859.2	ENSMUST00000119438.2	645	1	-32	-41	-32	41	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATAAATCTTGCATCAAG	NA	False	NA	NA	False	NA	NA	NA	105385222	105384504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_105384500_105385200
ENSMUSG00000080873.4_0	chr2	-	94	1	FSM	ENSMUSG00000080873.4	ENSMUST00000117928.2	348	1	299	-45	299	45	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAACAAACAAACAA	2587	False	NA	NA	False	AATAAA	-22	NA	90578008	90577914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_90577900_90578000
ENSMUSG00000080885.2_0	chr19	-	220	1	FSM	ENSMUSG00000080885.2	ENSMUST00000121321.2	642	1	482	-60	482	60	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATC	NA	False	NA	NA	False	AATAAA	-11	NA	37272713	37272493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_37272500_37272700
ENSMUSG00000080888.4_0	chr2	+	3622	4	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-81743	1479	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.24264068711928	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	174846550	174933190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_174846640_174928293_174928421_174928631_174928693_174929845
ENSMUSG00000080888.4_20	chr2	+	3406	2	ISM	ENSMUSG00000080888.4	ENSMUST00000121827.2	2055	3	336	-1477	336	1477	3prime_fragment	FALSE	canonical	3	9	junction_1	0	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	174928629	174933188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_174928693_174929845
ENSMUSG00000080888.4_6	chr2	+	3609	3	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-8588	1479	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	3	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	174919705	174933190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_174919909_174928631_174928693_174929845
ENSMUSG00000080888.4_7	chr2	+	3653	4	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-8592	1479	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.24264068711928	56	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	174919701	174933190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_174919822_174928293_174928421_174928631_174928693_174929845
ENSMUSG00000080893.2_0	chr5	+	453	1	FSM	ENSMUSG00000080893.2	ENSMUST00000118998.2	402	1	10	-61	10	61	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCATGAACTTGATTAAAAT	3501	False	NA	NA	False	NA	NA	NA	130217245	130217698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_130217200_130217700
ENSMUSG00000080916.4_0	chr4	-	986	1	FSM	ENSMUSG00000080916.4	ENSMUST00000118271.2	849	1	-13	-124	-13	124	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-16	NA	44753138	44752152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_44752200_44753100
ENSMUSG00000080921.5_0	chr6	-	296	1	FSM	ENSMUSG00000080921.5	ENSMUST00000117356.2	213	1	-42	-41	-42	41	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-15	NA	140692940	140692644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_140692600_140692900
ENSMUSG00000080935.4_0	chr5	-	2337	1	FSM	ENSMUSG00000080935.4	ENSMUST00000121655.2	1293	1	-56	-988	-56	988	mono-exon	FALSE	NA	NA	NA	NA	NA	667	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCCAGAAAAAAAAAAAAAAG	1739	False	NA	NA	False	AATAAA	-12	NA	138363870	138361533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_138361500_138363900
ENSMUSG00000080989.2_0	chr2	+	1389	1	FSM	ENSMUSG00000080989.2	ENSMUST00000121864.2	1268	1	64	-185	64	185	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGGGGAAATTGCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	130722849	130724238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_130722800_130724200
ENSMUSG00000081044.9_0	chrX	+	2995	3	FSM	ENSMUSG00000081044.9	ENSMUST00000121565.8	2997	3	-1	3	-1	-3	multi-exon	FALSE	canonical	2	7	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACACAGTGATTCCAATTC	NA	False	NA	NA	False	AATAAA	-15	NA	93012263	93019073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_93013537_93015408_93015640_93017582
ENSMUSG00000081049.2_0	chrX	+	476	1	FSM	ENSMUSG00000081049.2	ENSMUST00000118723.2	402	1	-4	-70	-4	70	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAAAAATGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	78238648	78239124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_78238600_78239100
ENSMUSG00000081051.5_0	chr1	+	273	1	FSM	ENSMUSG00000081051.5	ENSMUST00000117288.2	531	1	294	-36	294	36	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95426639	95426912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_95426600_95426900
ENSMUSG00000081087.2_0	chr2	-	302	1	FSM	ENSMUSG00000081087.2	ENSMUST00000117430.2	392	1	125	-35	125	35	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAAAAGTGGTCTT	NA	False	NA	NA	False	AATAAA	-18	NA	152027477	152027175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_152027200_152027500
ENSMUSG00000081094.5_0	chr8	+	676	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	-2	-83	-2	83	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATGGGAC	7115	False	NA	NA	False	AATAAA	-18	NA	19542949	19543625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_19542900_19543600
ENSMUSG00000081133.3_0	chrX	-	2417	2	NNC	ENSMUSG00000081133.3	novel	451	3	NA	NA	-94	208	intron_retention	TRUE	canonical	2	7	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCTTCAATTGCCCTC	NA	False	NA	NA	False	AATAAA	-14	NA	37034573	37029484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_-_37031443_37034114
ENSMUSG00000081146.2_0	chrX	-	2679	2	ISM	ENSMUSG00000081146.2	ENSMUST00000120075.2	1386	3	1008	-1858	1008	1858	3prime_fragment	FALSE	canonical	3	24	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTATCCGTTTCTTTGA	NA	False	NA	NA	False	AATAAA	-19	NA	134022725	134018851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_134021224_134022418
ENSMUSG00000081179.2_0	chr4	-	3740	1	FSM	ENSMUSG00000081179.2	ENSMUST00000121031.2	2950	1	-422	-368	-422	368	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGATAAAGCTGATGGAAATA	NA	False	NA	NA	False	AAAAAG	-6	NA	147823305	147819565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_147819600_147823300
ENSMUSG00000081205.5_0	chrX	+	872	1	FSM	ENSMUSG00000081205.5	ENSMUST00000117582.2	1068	1	583	-387	583	387	mono-exon	FALSE	NA	NA	NA	NA	NA	431	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTGTGTAGTTCAGTT	NA	False	NA	NA	False	NA	NA	NA	79500930	79501802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_79500900_79501800
ENSMUSG00000081214.4_0	chr1	-	434	1	FSM	ENSMUSG00000081214.4	ENSMUST00000117444.2	333	1	-59	-42	-59	42	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-23	NA	181069944	181069510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_181069500_181069900
ENSMUSG00000081221.5_0	chrX	-	1246	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-64	-183	-64	183	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAACAAAAAAAAAACAA	NA	False	NA	NA	False	AATAAA	-14	NA	79238522	79237276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_79237300_79238500
ENSMUSG00000081272.2_0	chr2	+	1780	1	FSM	ENSMUSG00000081272.2	ENSMUST00000119733.2	1308	1	-17	-455	-17	455	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGTGGAAAAAAAAAAAGAT	NA	False	NA	NA	False	AATAAA	-6	NA	49198149	49199929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_49198100_49199900
ENSMUSG00000081344.6_0	chr2	-	291	1	FSM	ENSMUSG00000081344.6	ENSMUST00000121320.2	171	1	-31	-89	-31	89	mono-exon	FALSE	NA	NA	NA	NA	NA	1519	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	172351642	172351351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_172351400_172351600
ENSMUSG00000081402.5_0	chr1	-	3119	1	FSM	ENSMUSG00000081402.5	ENSMUST00000117459.3	2557	1	149	-711	149	711	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACCAAAAAAATTAAA	9984	False	NA	NA	False	NA	NA	NA	33877612	33874493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_33874500_33877600
ENSMUSG00000081406.5_0	chr2	-	799	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	-11	-38	-11	38	mono-exon	FALSE	NA	NA	NA	NA	NA	599	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	75022177	75021378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_75021400_75022200
ENSMUSG00000081434.4_0	chr2	+	244	1	FSM	ENSMUSG00000081434.4	ENSMUST00000121456.2	952	1	766	-58	766	58	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTTCTCTTAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-6	NA	152196300	152196544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_152196300_152196500
ENSMUSG00000081443.3_0	chrX	-	389	3	FSM	ENSMUSG00000081443.3	ENSMUST00000122154.3	337	3	-57	5	-57	-5	multi-exon	FALSE	canonical	3	77	junction_2	7	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAAATTTTCTTTGACT	3570	False	NA	NA	False	AATAAA	-11	NA	101730635	101729902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_101730044_101730198_101730354_101730542
ENSMUSG00000081443.3_3	chrX	-	213	2	ISM	ENSMUSG00000081443.3	ENSMUST00000122154.3	337	3	320	-7	320	7	3prime_fragment	FALSE	canonical	3	91	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGACTGTGTGAAATTTC	3947	False	NA	NA	False	AATAAA	-23	NA	101730258	101729890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_101730044_101730198
ENSMUSG00000081476.2_1	chr2	-	1147	1	FSM	ENSMUSG00000081476.2	ENSMUST00000117207.2	597	1	-26	-524	-26	524	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATAATATC	NA	False	NA	NA	False	AATAAA	-17	NA	94215469	94214322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_94214300_94215500
ENSMUSG00000081520.2_0	chr9	-	91	1	FSM	ENSMUSG00000081520.2	ENSMUST00000120385.2	331	1	285	-45	285	45	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTGTCAGGG	3640	False	NA	NA	False	AATAAA	-24	NA	90103393	90103302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_90103300_90103400
ENSMUSG00000081534.4_0	chr15	+	2489	3	FSM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	36	11	36	-11	multi-exon	TRUE	canonical	3	145	junction_2	1	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTCAGAAGTTTGTTTT	NA	False	NA	6	True	AATAAA	-7	NA	97682271	97690562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_97682498_97687783_97687952_97688467
ENSMUSG00000081534.4_5	chr15	+	1493	1	ISM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	6841	4	6707	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGTTTGTTTTTTTTTTT	NA	False	NA	13	True	AATAAA	-14	NA	97689076	97690569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_97689100_97690600
ENSMUSG00000081593.2_0	chr4	+	3231	2	Genic_Genomic	ENSMUSG00000081593.2	novel	1963	1	NA	NA	-11930	328	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATTAAAAAAAAAAAGGAAC	-1	True	NA	NA	False	AATAAA	-15	NA	12113359	12127580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_12113539_12124528
ENSMUSG00000081593.2_6	chr4	+	3066	1	FSM	ENSMUSG00000081593.2	ENSMUST00000117060.2	1963	1	-774	-329	-774	329	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAAAAAAAAAAGGAACT	115	False	NA	NA	False	AATAAA	-16	NA	12124515	12127581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_12124500_12127600
ENSMUSG00000081593.2_8	chr4	+	3486	2	Genic_Genomic	ENSMUSG00000081593.2	novel	1963	1	NA	NA	-935	644	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTCTCTCTGGCCTCCA	53	False	NA	NA	False	NA	NA	NA	12124354	12127896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_12124461_12124516
ENSMUSG00000081604.6_0	chr11	-	472	1	FSM	ENSMUSG00000081604.6	ENSMUST00000118048.2	411	1	-39	-22	-39	22	mono-exon	FALSE	NA	NA	NA	NA	NA	550	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATTAAAAAAAAATACA	NA	False	NA	NA	False	NA	NA	NA	93928493	93928021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_93928000_93928500
ENSMUSG00000081669.2_0	chr6	+	871	1	FSM	ENSMUSG00000081669.2	ENSMUST00000119728.2	528	1	-7	-336	-7	336	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-25	NA	85053166	85054037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_85053200_85054000
ENSMUSG00000081683.6_0	chr5	+	3246	1	FSM	ENSMUSG00000081683.6	ENSMUST00000117102.4	3250	1	-1	5	-1	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	384	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGCTGCTAGTCACTGT	NA	False	NA	9	True	AATAAA	-12	NA	128677906	128681152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_128677900_128681200
ENSMUSG00000081684.5_0	chrX	+	948	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	-26	-40	-26	40	mono-exon	FALSE	NA	NA	NA	NA	NA	3539	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	51987438	51988386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_51987400_51988400
ENSMUSG00000081738.2_0	chrX	+	1225	1	FSM	ENSMUSG00000081738.2	ENSMUST00000117548.2	636	1	-99	-490	-99	490	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATACAATTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	144958838	144960063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_144958800_144960100
ENSMUSG00000081752.4_0	chrX	-	1613	1	FSM	ENSMUSG00000081752.4	ENSMUST00000121773.2	1101	1	-55	-457	-55	457	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAACTCTCAATTCTGAAT	NA	False	NA	NA	False	ATTAAA	-44	NA	61820346	61818733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_61818700_61820300
ENSMUSG00000081824.6_0	chr16	+	471	1	FSM	ENSMUSG00000081824.6	ENSMUST00000121906.2	319	1	-45	-107	-45	107	mono-exon	FALSE	NA	NA	NA	NA	NA	405	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGTCTTAAAAAAAAAAAATA	NA	False	NA	NA	False	AATAAA	-10	NA	42775948	42776419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_42775900_42776400
ENSMUSG00000081855.5_0	chr5	-	620	1	FSM	ENSMUSG00000081855.5	ENSMUST00000121001.2	555	1	-35	-30	-35	30	mono-exon	FALSE	NA	NA	NA	NA	NA	1661	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGGTCAAAACAAAACAAA	NA	False	NA	NA	False	AATAAA	-30	NA	22818215	22817595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_22817600_22818200
ENSMUSG00000081885.2_0	chr4	+	2198	1	Genic_Genomic	ENSMUSG00000081885.2	novel	NA	NA	NA	NA	-401	-1246	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAATAGTGGAAC	NA	False	NA	NA	False	NA	NA	NA	145367525	145369723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_145367500_145369700
ENSMUSG00000081895.4_0	chr7	-	619	1	FSM	ENSMUSG00000081895.4	ENSMUST00000119383.2	555	1	-35	-29	-35	29	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAACT	7653	False	NA	NA	False	AATAAA	-29	NA	72299094	72298475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_72298500_72299100
ENSMUSG00000081926.2_0	chr10	+	113	1	FSM	ENSMUSG00000081926.2	ENSMUST00000121411.2	114	1	49	-48	49	48	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2168	False	NA	NA	False	AATAAA	-16	NA	6988709	6988822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_6988700_6988800
ENSMUSG00000081949.4_2	chr2	-	1305	3	NNC	ENSMUSG00000081949.4	novel	401	4	NA	NA	-100	11577	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATAACACCTGTTCTT	NA	False	NA	NA	False	AATAAA	-29	NA	174951908	174934669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_174935811_174947682_174947744_174951805
ENSMUSG00000081965.2_0	chr11	-	3520	1	FSM	ENSMUSG00000081965.2	ENSMUST00000118770.2	1845	1	-372	-1303	-372	1303	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTAAGTGTCTTCTCTTCC	NA	False	NA	NA	False	AATAAA	-15	NA	105057818	105054298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_105054300_105057800
ENSMUSG00000081984.4_0	chr1	-	1014	1	FSM	ENSMUSG00000081984.4	ENSMUST00000119972.4	1051	1	39	-2	39	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGTTATGTTCTAGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	88133465	88132451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_88132500_88133500
ENSMUSG00000082035.2_0	chrX	+	620	1	FSM	ENSMUSG00000082035.2	ENSMUST00000118924.2	621	1	1	0	1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	95528465	95529085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_95528500_95529100
ENSMUSG00000082044.2_0	chr2	-	414	1	FSM	ENSMUSG00000082044.2	ENSMUST00000121967.2	279	1	6	-141	6	141	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAACA	NA	False	NA	NA	False	AATAAA	-21	NA	131164280	131163866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_131163900_131164300
ENSMUSG00000082045.5_0	chr11	+	572	1	FSM	ENSMUSG00000082045.5	ENSMUST00000120901.2	569	1	13	-16	13	16	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	102014910	102015482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_102014900_102015500
ENSMUSG00000082062.2_1	chr4	+	915	1	FSM	ENSMUSG00000082062.2	ENSMUST00000118517.2	552	1	-204	-159	-204	159	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	125397876	125398791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_125397900_125398800
ENSMUSG00000082064.4_0	chr2	+	102	1	FSM	ENSMUSG00000082064.4	ENSMUST00000119057.2	891	1	842	-53	842	53	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAAGGTG	NA	False	NA	NA	False	AATAAA	-15	NA	154546570	154546672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_154546600_154546700
ENSMUSG00000082082.2_16	chr4	+	4471	2	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14303	2904	multi-exon	FALSE	canonical	3	59	junction_1	0	56	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATGTAAATGTGACTTAT	NA	False	NA	11	True	ATTAAA	-7	NA	145159006	145180362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_145159152_145176036
ENSMUSG00000082082.2_27	chr4	+	2323	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14306	773	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	40.1769523483303	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGCTTTGGTTGTT	NA	False	NA	17	True	NA	NA	NA	145159003	145178231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_145159032_145173065_145173196_145173287_145173342_145176036_145176245_145176328
ENSMUSG00000082082.2_74	chr4	+	1639	1	Genic_Genomic	ENSMUSG00000082082.2	novel	NA	NA	NA	NA	3285	775	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	NA	False	NA	19	True	NA	NA	NA	145176594	145178233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_145176600_145178200
ENSMUSG00000082087.5_0	chr11	-	1335	1	FSM	ENSMUSG00000082087.5	ENSMUST00000122180.2	951	1	-32	-352	-32	352	mono-exon	FALSE	NA	NA	NA	NA	NA	611	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTGTGAAAAAAAAAAAAGA	5824	False	NA	NA	False	AATAAA	-5	NA	40564715	40563380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_40563400_40564700
ENSMUSG00000082108.4_0	chr2	-	1599	1	FSM	ENSMUSG00000082108.4	ENSMUST00000118208.2	345	1	-223	-1031	-223	1031	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	90861690	90860091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_90860100_90861700
ENSMUSG00000082192.3_0	chrX	+	666	1	FSM	ENSMUSG00000082192.3	ENSMUST00000121891.3	340	1	-122	-204	-122	204	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	48749714	48750380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_48749700_48750400
ENSMUSG00000082193.2_0	chr1	+	113	1	FSM	ENSMUSG00000082193.2	ENSMUST00000121367.2	894	1	836	-55	836	55	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	14936131	14936244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_14936100_14936200
ENSMUSG00000082195.4_0	chr4	+	3789	1	FSM	ENSMUSG00000082195.4	ENSMUST00000121342.2	3177	1	-232	-380	-232	380	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAATATACATTGTTAGA	NA	False	NA	NA	False	GATAAA	-9	NA	146004089	146007878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_146004100_146007900
ENSMUSG00000082226.5_0	chrX	+	1368	1	FSM	ENSMUSG00000082226.5	ENSMUST00000117865.3	1210	1	-164	6	-164	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTGACCTTATTTT	2161	False	NA	NA	False	NA	NA	NA	59591449	59592817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_59591400_59592800
ENSMUSG00000082229.2_0	chrX	-	2064	1	FSM	ENSMUSG00000082229.2	ENSMUST00000121720.2	2465	1	378	23	378	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAATGAATAAAAA	NA	False	NA	NA	False	AATACA	-24	NA	102229868	102227804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_102227800_102229900
ENSMUSG00000082260.4_0	chrX	-	182	1	FSM	ENSMUSG00000082260.4	ENSMUST00000118664.2	348	1	211	-45	211	45	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GGAAAAAAAAAAAAACTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	113890803	113890621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_113890600_113890800
ENSMUSG00000082332.3_0	chr2	-	2247	1	Genic_Genomic	ENSMUSG00000082332.3	novel	NA	NA	NA	NA	-88	410	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAACTAGCATGTAGATT	NA	False	NA	NA	False	AATAAA	-21	NA	6138855	6136608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_6136600_6138900
ENSMUSG00000082352.2_0	chr4	+	975	2	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9889	87	multi-exon	FALSE	canonical	3	94	junction_1	0	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAAAGCTGTGTAAGATT	7472	False	NA	13	True	AAGAAA	-9	NA	145291208	145301818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_145291368_145301002
ENSMUSG00000082352.2_1	chr4	+	708	1	FSM	ENSMUSG00000082352.2	ENSMUST00000118937.2	634	1	13	-87	13	87	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAAAGCTGTGTAAGATT	NA	False	NA	13	True	AAGAAA	-9	NA	145301110	145301818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_145301100_145301800
ENSMUSG00000082399.2_0	chr2	+	271	1	FSM	ENSMUSG00000082399.2	ENSMUST00000118248.2	480	1	327	-118	327	118	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	AATAAA	-18	NA	134646195	134646466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_134646200_134646500
ENSMUSG00000082424.5_0	chr2	-	584	1	FSM	ENSMUSG00000082424.5	ENSMUST00000120014.3	1000	1	597	-181	597	181	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	11414244	11413660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_11413700_11414200
ENSMUSG00000082454.4_1	chr11	-	2081	1	FSM	ENSMUSG00000082454.4	ENSMUST00000120566.2	1848	1	-14	-219	-14	219	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAAAAGTAACTGTACAGT	NA	False	NA	NA	False	NA	NA	NA	48644555	48642474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_48642500_48644600
ENSMUSG00000082465.2_0	chr9	-	149	1	FSM	ENSMUSG00000082465.2	ENSMUST00000118010.2	750	1	640	-39	640	39	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAACAA	9405	False	NA	NA	False	AATAAA	-18	NA	53600943	53600794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_53600800_53600900
ENSMUSG00000082475.3_0	chr14	+	284	1	Genic_Genomic	ENSMUSG00000082475.3	novel	NA	NA	NA	NA	8986	82	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATATTGAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-9	NA	45950978	45951262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_+_45951000_45951300
ENSMUSG00000082536.2_1	chr2	+	1357	1	FSM	ENSMUSG00000082536.2	ENSMUST00000118928.2	1365	1	146	-138	146	138	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAAGAATGTTTTGTGGA	NA	False	NA	NA	False	AGTAAA	-41	NA	40445909	40447266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_40445900_40447300
ENSMUSG00000082580.4_0	chr2	+	451	1	FSM	ENSMUSG00000082580.4	ENSMUST00000122241.2	312	1	-10	-129	-10	129	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1040	False	NA	NA	False	AATAAA	-16	NA	3551783	3552234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_3551800_3552200
ENSMUSG00000082585.4_0	chr15	-	873	1	FSM	ENSMUSG00000082585.4	ENSMUST00000120421.2	648	1	-123	-102	-123	102	mono-exon	FALSE	NA	NA	NA	NA	NA	709	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTGTTTTTAAACTGT	NA	False	NA	NA	False	AAGAAA	-24	NA	73966305	73965432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_73965400_73966300
ENSMUSG00000082691.7_0	chr6	-	672	1	FSM	ENSMUSG00000082691.7	ENSMUST00000117045.2	342	1	-10	-320	-10	320	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATTTAAAAAAAAAAGAG	NA	False	NA	-18	True	AATAAA	-7	NA	135326757	135326085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_135326100_135326800
ENSMUSG00000082762.2_0	chr4	-	394	1	FSM	ENSMUSG00000082762.2	ENSMUST00000121722.2	873	1	518	-39	518	39	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAGAA	8831	False	NA	NA	False	AATAAA	-15	NA	35202457	35202063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_35202100_35202500
ENSMUSG00000082776.4_0	chrX	-	2129	1	FSM	ENSMUSG00000082776.4	ENSMUST00000118127.2	1416	1	-59	-654	-59	654	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGTACTGGCTGGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	93817699	93815570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_93815600_93817700
ENSMUSG00000082925.2_1	chr4	+	1707	1	FSM	ENSMUSG00000082925.2	ENSMUST00000117628.2	3121	1	-407	1821	-407	-1821	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGAGGCTATTGAACAT	8070	False	NA	NA	False	AATAAA	-37	NA	147360025	147361732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_147360000_147361700
ENSMUSG00000082925.2_3	chr4	+	2430	1	FSM	ENSMUSG00000082925.2	ENSMUST00000117628.2	3121	1	2329	-1638	2329	1638	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAACATTAGCCACTGTG	751	False	NA	NA	False	NA	NA	NA	147362761	147365191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_147362800_147365200
ENSMUSG00000082926.4_0	chrX	-	830	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-41	-39	-41	39	mono-exon	FALSE	NA	NA	NA	NA	NA	3973	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGCTTTCATTAATAG	NA	False	NA	NA	False	AATAAA	-18	NA	68649892	68649062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_68649100_68649900
ENSMUSG00000082935.4_0	chr1	-	896	1	FSM	ENSMUSG00000082935.4	ENSMUST00000119064.2	1124	1	281	-53	281	53	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATCAACTGAAATTTGAAA	NA	False	NA	NA	False	AGTAAA	-4	NA	21582999	21582103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_21582100_21583000
ENSMUSG00000082938.2_0	chr5	+	1465	1	FSM	ENSMUSG00000082938.2	ENSMUST00000118681.2	990	1	11	-486	11	486	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAAGCATGTCCTTAAG	NA	False	NA	NA	False	AATAAA	-11	NA	40485791	40487256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_40485800_40487300
ENSMUSG00000082998.4_0	chr4	+	612	1	FSM	ENSMUSG00000082998.4	ENSMUST00000117230.2	597	1	2	-17	2	17	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTGCCATTCTTGGACC	NA	False	NA	NA	False	NA	NA	NA	69610216	69610828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_69610200_69610800
ENSMUSG00000083022.2_0	chr11	-	176	1	FSM	ENSMUSG00000083022.2	ENSMUST00000117476.2	393	1	253	-36	253	36	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACCAAA	NA	False	NA	-15	True	AATAAA	-19	NA	6122783	6122607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6122600_6122800
ENSMUSG00000083038.2_1	chr4	+	2207	2	NNC	ENSMUSG00000083038.2	novel	1443	2	NA	NA	-544	16	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCGGTAGTTTTGTACA	NA	False	NA	NA	False	AATAAA	-16	NA	146664541	146666785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_146664557_146664593
ENSMUSG00000083061.2_0	chr11	-	454	1	FSM	ENSMUSG00000083061.2	ENSMUST00000118307.2	348	1	-61	-45	-61	45	mono-exon	FALSE	NA	NA	NA	NA	NA	632	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAATTA	NA	False	NA	NA	False	AATAAA	-22	NA	49569945	49569491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_49569500_49569900
ENSMUSG00000083087.2_0	chr4	+	325	1	FSM	ENSMUSG00000083087.2	ENSMUST00000117071.2	859	1	542	-8	542	8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATATGAGAAAAATAAAAGAA	8680	False	NA	NA	False	NA	NA	NA	67849659	67849984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_67849700_67850000
ENSMUSG00000083111.2_0	chr2	-	3597	4	NNC	ENSMUSG00000083111.2	novel	1958	3	NA	NA	-8608	1731	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	11.8415464455544	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCTTGGTCATGGTAT	NA	False	NA	NA	False	NA	NA	NA	176757239	176743577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_176746517_176746685_176747091_176748242_176748304_176757047
ENSMUSG00000083123.2_0	chrX	+	832	1	FSM	ENSMUSG00000083123.2	ENSMUST00000122268.2	528	1	-148	-156	-148	156	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAATTGAAGTATAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	8946134	8946966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_8946100_8947000
ENSMUSG00000083240.4_0	chr2	-	520	1	FSM	ENSMUSG00000083240.4	ENSMUST00000118708.2	357	1	-54	-109	-54	109	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTAGGACCCTTCAC	NA	False	NA	NA	False	ATTAAA	-13	NA	40017926	40017406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_40017400_40017900
ENSMUSG00000083246.2_0	chr4	+	3205	1	FSM	ENSMUSG00000083246.2	ENSMUST00000120647.2	1953	1	-916	-336	-916	336	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGGAA	7	False	NA	NA	False	NA	NA	NA	12113367	12116572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_12113400_12116600
ENSMUSG00000083282.4_0	chr19	+	1892	14	FSM	ENSMUSG00000083282.4	ENSMUST00000119694.3	1980	14	81	7	-10	0	multi-exon	FALSE	canonical	3	86	junction_8	8.77530154238379	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGTGGTGTAAGTG	NA	False	NA	3	True	AATAAA	-14	NA	4905238	4910939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4905515_4905725_4905825_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
ENSMUSG00000083307.2_0	chrX	+	1635	1	FSM	ENSMUSG00000083307.2	ENSMUST00000121924.2	1257	1	29	-407	29	407	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGAGTTTTTTGGTCTCT	NA	False	NA	3	True	AATAAA	-28	NA	12803139	12804774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_12803100_12804800
ENSMUSG00000083327.2_0	chrX	-	2868	1	FSM	ENSMUSG00000083327.2	ENSMUST00000120233.2	2406	1	-254	-208	-254	208	mono-exon	FALSE	NA	NA	NA	NA	NA	3323	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTGAAGAGTGAATTACCA	NA	False	NA	-5	True	AATAAA	-18	NA	103392094	103389226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_103389200_103392100
ENSMUSG00000083364.5_0	chrX	-	733	1	FSM	ENSMUSG00000083364.5	ENSMUST00000122000.2	393	1	-53	-287	-53	287	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAAGTGAAA	NA	False	NA	NA	False	AATAAA	-16	NA	13084894	13084161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_13084200_13084900
ENSMUSG00000083380.2_0	chr15	-	432	1	FSM	ENSMUSG00000083380.2	ENSMUST00000120938.2	390	1	5	-47	5	47	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	AATAAA	-14	NA	73681740	73681308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_73681300_73681700
ENSMUSG00000083396.2_0	chr7	+	1439	1	FSM	ENSMUSG00000083396.2	ENSMUST00000121585.2	1194	1	-106	-139	-106	139	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAACACAAATATAAAAGC	NA	False	NA	NA	False	NA	NA	NA	140470693	140472132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_140470700_140472100
ENSMUSG00000083411.4_0	chrX	+	463	1	FSM	ENSMUSG00000083411.4	ENSMUST00000117119.2	347	1	-70	-46	-70	46	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGGAAAAAAAATTAAAAATA	NA	False	NA	NA	False	AATAAA	-38	NA	70847223	70847686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_70847200_70847700
ENSMUSG00000083424.4_0	chr2	-	414	1	FSM	ENSMUSG00000083424.4	ENSMUST00000121779.2	333	1	-48	-33	-48	33	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	AATAAA	-14	NA	108705651	108705237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_108705200_108705700
ENSMUSG00000083496.2_0	chr4	+	165	1	FSM	ENSMUSG00000083496.2	ENSMUST00000121853.2	749	1	624	-40	624	40	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	79246568	79246733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_79246600_79246700
ENSMUSG00000083534.2_0	chr17	-	2943	4	NNC	ENSMUSG00000083534.2	novel	1034	5	NA	NA	109	1842	at_least_one_novel_splicesite	FALSE	canonical	3	146	junction_3	4.92160768674447	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTTGGGTATTGATTG	NA	False	NA	-3	True	NA	NA	NA	37282179	37278244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_37280210_37280331_37280614_37281212_37281462_37281732
ENSMUSG00000083534.2_1	chr17	-	3413	7	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	280	1841	multi-exon	FALSE	canonical	3	28	junction_4	72.6934201515745	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATGTTGGGTATTGATT	NA	False	NA	-4	True	NA	NA	NA	37299657	37278245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_-_37280210_37280331_37280614_37281212_37281462_37281732_37282006_37298307_37298416_37298546_37298823_37299396
ENSMUSG00000083534.2_11	chr17	-	2559	3	ISM	ENSMUSG00000083534.2	ENSMUST00000119193.2	1034	5	764	-1842	764	1842	3prime_fragment	FALSE	canonical	3	153	junction_1	2.5	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTTGGGTATTGATTG	NA	False	NA	-3	True	NA	NA	NA	37281524	37278244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_37280210_37280331_37280614_37281212
ENSMUSG00000083534.2_3	chr17	-	2105	2	ISM	ENSMUSG00000083534.2	ENSMUST00000119193.2	1034	5	1819	-1844	1819	1844	3prime_fragment	FALSE	canonical	3	153	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGGGTATTGATTGTG	NA	False	NA	-1	True	NA	NA	NA	37280469	37278242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_37280210_37280331
ENSMUSG00000083576.2_0	chrX	+	1996	2	Genic_Genomic	ENSMUSG00000083576.2	novel	1100	1	NA	NA	-49412	364	multi-exon	FALSE	canonical	3	30	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTGTGTGGCTTACTA	NA	False	NA	NA	False	AATAAA	-12	NA	61249241	61300117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_61249365_61298244
ENSMUSG00000083596.5_0	chrX	-	551	1	FSM	ENSMUSG00000083596.5	ENSMUST00000121545.2	483	1	-36	-32	-36	32	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATCTCCCAGAG	NA	False	NA	NA	False	AATAAA	-15	NA	149998681	149998130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_149998100_149998700
ENSMUSG00000083621.2_0	chrX	-	449	1	FSM	ENSMUSG00000083621.2	ENSMUST00000119571.2	408	1	-12	-29	-12	29	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAGAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-5	NA	51861638	51861189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_51861200_51861600
ENSMUSG00000083626.2_0	chr7	-	600	1	FSM	ENSMUSG00000083626.2	ENSMUST00000118750.2	468	1	5	-137	5	137	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACTAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-9	NA	139240066	139239466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_139239500_139240100
ENSMUSG00000083669.6_0	chr7	-	309	1	FSM	ENSMUSG00000083669.6	ENSMUST00000121822.2	348	1	154	-115	154	115	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-9	NA	29664836	29664527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29664500_29664800
ENSMUSG00000083674.4_0	chr2	+	1281	3	FSM	ENSMUSG00000083674.4	ENSMUST00000124788.2	1079	3	-216	14	-216	-14	multi-exon	FALSE	canonical	1	3	junction_1	3.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCATATTAAACCACTCAA	NA	False	NA	NA	False	AATAAA	-3	NA	144300983	144309700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_144301321_144306398_144306495_144308852
ENSMUSG00000083678.4_0	chr4	-	969	1	FSM	ENSMUSG00000083678.4	ENSMUST00000122331.2	731	1	-79	-159	-79	159	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGAGTTGCTGTGG	NA	False	NA	NA	False	NA	NA	NA	135443988	135443019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_135443000_135444000
ENSMUSG00000083716.5_0	chr2	-	579	1	FSM	ENSMUSG00000083716.5	ENSMUST00000120418.2	567	1	17	-29	17	29	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCATTGGAAAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-6	NA	36698387	36697808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_36697800_36698400
ENSMUSG00000083773.5_0	chr2	-	1250	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-70	-180	-70	180	mono-exon	FALSE	NA	NA	NA	NA	NA	371	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	28824691	28823441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_28823400_28824700
ENSMUSG00000083816.4_0	chr4	+	1651	1	Genic_Genomic	ENSMUSG00000083816.4	novel	NA	NA	NA	NA	-215	-428	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATTAAAAAAAAAAATC	231	False	NA	NA	False	NA	NA	NA	132611858	132613509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_132611900_132613500
ENSMUSG00000083833.5_0	chr5	-	631	1	FSM	ENSMUSG00000083833.5	ENSMUST00000118829.2	483	1	-30	-118	-30	118	mono-exon	FALSE	NA	NA	NA	NA	NA	238	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATTTA	NA	False	NA	NA	False	AATAAA	-18	NA	115940248	115939617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115939600_115940200
ENSMUSG00000083844.9_0	chr11	+	1763	2	ISM	ENSMUSG00000083844.9	ENSMUST00000131130.8	595	3	-13	376	8	-12	5prime_fragment	FALSE	canonical	3	28	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAACAGAATCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	5712136	5731864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_5712241_5730205
ENSMUSG00000083844.9_1	chr11	+	836	5	ISM	ENSMUSG00000083844.9	ENSMUST00000142942.8	1840	7	-1	4088	-1	-1254	5prime_fragment	FALSE	canonical	3	13	junction_2	33.1313673125635	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAGCAGACTGTGAGTC	NA	False	NA	8	True	NA	NA	NA	5712148	5730622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_5712241_5715508_5715572_5718885_5719073_5719166_5719244_5730205
ENSMUSG00000083844.9_11	chr11	+	4168	4	NIC	ENSMUSG00000083844.9	novel	1840	7	NA	NA	2	-1254	intron_retention	FALSE	canonical	3	32	junction_3	31.4147877422224	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAGCAGACTGTGAGTC	NA	False	NA	8	True	NA	NA	NA	5712130	5730622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_5712241_5715508_5719073_5719166_5719244_5730205
ENSMUSG00000083844.9_2	chr11	+	1827	3	FSM	ENSMUSG00000083844.9	ENSMUST00000137510.8	1846	3	12	7	-9	-7	multi-exon	FALSE	canonical	3	68	junction_2	16.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGAATCTTTTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	5712140	5731869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_5712241_5715508_5715572_5730205
ENSMUSG00000083844.9_6	chr11	+	838	5	NNC	ENSMUSG00000083844.9	novel	1840	7	NA	NA	-6	-1254	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	35.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAGCAGACTGTGAGTC	NA	False	NA	8	True	NA	NA	NA	5712143	5730622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_5712241_5715508_5715572_5718888_5719073_5719166_5719244_5730205
ENSMUSG00000083854.4_1	chr7	-	475	1	FSM	ENSMUSG00000083854.4	ENSMUST00000120890.2	351	1	-106	-18	-106	18	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCATTAGTCTACTTAT	NA	False	NA	NA	False	AATAAA	-18	NA	103532317	103531842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_103531800_103532300
ENSMUSG00000083879.5_0	chr2	-	1579	1	FSM	ENSMUSG00000083879.5	ENSMUST00000121500.2	807	1	-17	-755	-17	755	mono-exon	FALSE	NA	NA	NA	NA	NA	247	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	AATAAA	-18	NA	134605567	134603988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_134604000_134605600
ENSMUSG00000083899.3_5	chr11	+	2665	2	FSM	ENSMUSG00000083899.3	ENSMUST00000121455.3	2255	2	42	-452	42	452	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAACAGTGCCCAATCAC	NA	False	NA	NA	False	NA	NA	NA	77184311	77187176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_77185700_77185899
ENSMUSG00000083910.2_0	chr2	-	167	1	FSM	ENSMUSG00000083910.2	ENSMUST00000119332.2	482	1	348	-33	348	33	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGGAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	AATAAA	-12	NA	67537767	67537600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_67537600_67537800
ENSMUSG00000083992.2_0	chr11	-	615	1	FSM	ENSMUSG00000083992.2	ENSMUST00000117851.2	599	1	4	-20	4	20	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTCAAAAAAAAAGAAAATAA	NA	False	NA	NA	False	AATAAA	-11	NA	86521848	86521233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_86521200_86521800
ENSMUSG00000084009.2_0	chrX	+	2661	2	NIC	ENSMUSG00000084009.2	novel	806	6	NA	NA	3444	102	intron_retention	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCCCCATGTGTCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	37389188	37395007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_37391631_37394788
ENSMUSG00000084106.5_0	chr1	-	819	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	101	-29	101	29	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAACAACAACAACAAAAAA	NA	False	NA	NA	False	ATTAAA	-12	NA	86837304	86836485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_86836500_86837300
ENSMUSG00000084111.5_0	chr5	-	696	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	-24	-36	-24	36	mono-exon	FALSE	NA	NA	NA	NA	NA	441	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	92288812	92288116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92288100_92288800
ENSMUSG00000084128.11_0	chr8	-	3322	15	FSM	ENSMUSG00000084128.11	ENSMUST00000115979.9	3536	15	121	93	-40	-93	multi-exon	FALSE	canonical	3	15	junction_13	4.96929346597888	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAGAAAACACAATCCCAA	NA	False	NA	NA	False	TATAAA	-23	NA	106863485	106857043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106858216_106858295_106858462_106858737_106858925_106859036_106859236_106859326_106859540_106859640_106859943_106860082_106860126_106860204_106860338_106860410_106860522_106860591_106860647_106860865_106860965_106861241_106861357_106861454_106861569_106862988_106863118_106863201
ENSMUSG00000084128.11_1	chr8	-	3315	15	NIC	ENSMUSG00000084128.11	novel	3536	15	NA	NA	-39	-96	combination_of_known_junctions	FALSE	canonical	2	6	junction_9	6.95613075653706	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTACAAGAAAACACAATCC	NA	False	NA	NA	False	TATAAA	-20	NA	106863484	106857046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_106858216_106858295_106858462_106858737_106858925_106859036_106859236_106859326_106859540_106859640_106859943_106860082_106860126_106860204_106860338_106860410_106860519_106860591_106860647_106860865_106860965_106861241_106861357_106861454_106861569_106862988_106863118_106863201
ENSMUSG00000084128.11_17	chr8	-	1675	4	ISM	ENSMUSG00000084128.11	ENSMUST00000115979.9	3536	15	4425	88	526	-88	3prime_fragment	FALSE	canonical	3	23	junction_2	2.86744175568088	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACACAATCCCAAGTGCT	NA	False	NA	NA	False	TATAAA	-28	NA	106859181	106857038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_106858216_106858295_106858462_106858737_106858925_106859036
ENSMUSG00000084131.2_0	chrX	+	117	1	FSM	ENSMUSG00000084131.2	ENSMUST00000117131.2	1214	1	1151	-54	1151	54	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACTGGTTTTACCACAAA	1021	False	NA	1	True	AATAAA	-12	NA	73215409	73215526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_73215400_73215500
ENSMUSG00000084235.3_0	chr5	-	475	1	FSM	ENSMUSG00000084235.3	ENSMUST00000118224.2	399	1	8	-84	8	84	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAAAAAAAATTCCTAG	NA	False	NA	-13	True	AATAAA	-15	NA	22733709	22733234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_22733200_22733700
ENSMUSG00000084314.2_0	chr4	+	435	1	FSM	ENSMUSG00000084314.2	ENSMUST00000121072.2	395	1	-26	-14	-26	14	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAGCCTTCGTGGACTG	1810	False	NA	NA	False	CATAAA	-1	NA	150931543	150931978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_150931500_150932000
ENSMUSG00000084319.4_0	chr6	-	567	1	FSM	ENSMUSG00000084319.4	ENSMUST00000121046.2	519	1	148	-196	148	196	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAATTTCAGAA	NA	False	NA	-10	True	AATAAA	-15	NA	99855147	99854580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_99854600_99855100
ENSMUSG00000084349.4_0	chrX	+	1291	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-56	-25	56	mono-exon	FALSE	NA	NA	NA	NA	NA	16596	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	13068784	13070075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_13068800_13070100
ENSMUSG00000084350.2_23	chr4	+	3018	6	Fusion	ENSMUSG00000084350.2_ENSMUSG00000094417.2	novel	2413	3	NA	NA	-54	312	multi-exon	FALSE	canonical	2	3	junction_4	108.584713472938	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCATCTACGGAATCTTA	NA	False	NA	NA	False	AATAAA	-22	NA	145501234	145556824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_145501361_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
ENSMUSG00000084350.2_37	chr4	+	2826	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43735	108	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	163.313930820368	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTGCTTCGAGTATTCA	NA	False	NA	NA	False	NA	NA	NA	145508071	145556620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_145508210_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
ENSMUSG00000084350.2_45	chr4	+	892	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43719	-2025	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	99.0898582096069	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATGACTCTGTAAACAGT	NA	False	NA	NA	False	AAAAAG	-36	NA	145508087	145554487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_145508425_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
ENSMUSG00000084350.2_9	chr4	+	2777	7	Fusion	ENSMUSG00000084350.2_ENSMUSG00000078502.11	novel	2413	3	NA	NA	13	-4	multi-exon	TRUE	canonical	2	3	junction_5	74.9525776000325	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATTTAATTCAAATGAGC	NA	False	NA	NA	False	AATAAA	-16	NA	145311785	145556508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_145311905_145510590_145510684_145516045_145516128_145541336_145541383_145551778_145551837_145552678_145552806_145554256
ENSMUSG00000084383.2_0	chr2	+	548	1	FSM	ENSMUSG00000084383.2	ENSMUST00000121309.2	483	1	-34	-31	-34	31	mono-exon	FALSE	NA	NA	NA	NA	NA	1368	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-14	NA	24875961	24876509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_24876000_24876500
ENSMUSG00000084416.4_0	chr1	-	701	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-19	-28	-19	28	mono-exon	FALSE	NA	NA	NA	NA	NA	402	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	65033782	65033081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_65033100_65033800
ENSMUSG00000084762.2_0	chr2	+	382	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	1	at_least_one_novel_splicesite	FALSE	canonical	3	337	junction_4	128.141523324799	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCTGAGCCCAAAATCA	NA	False	NA	26	True	AATAAA	-36	NA	135488443	135493984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417_135493442_135493766
ENSMUSG00000084762.2_1	chr2	+	417	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	252.149137416728	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135488443	135493983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417_135493478_135493766
ENSMUSG00000084762.2_10	chr2	+	347	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	189.688048003968	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135488443	135493983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_135488469_135490846_135490892_135493417_135493478_135493766
ENSMUSG00000084762.2_12	chr2	+	2720	2	ISM	ENSMUSG00000084762.2	ENSMUST00000146980.2	412	4	-2383	2659	-2383	-2659	5prime_fragment	FALSE	canonical	3	692	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAACAGACAAAAAAAT	NA	False	NA	NA	False	AATAAA	-10	NA	135488443	135491324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_135490892_135491052
ENSMUSG00000084762.2_4	chr2	+	342	3	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	-2659	at_least_one_novel_splicesite	FALSE	canonical	3	453	junction_1	119.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAACAGACAAAAAAAT	NA	False	NA	NA	False	AATAAA	-10	NA	135488443	135491324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_135488469_135490846_135490892_135491052
ENSMUSG00000084762.2_5	chr2	+	387	4	FSM	ENSMUSG00000084762.2	ENSMUST00000146980.2	412	4	19	6	19	-6	multi-exon	FALSE	canonical	0	0	junction_3	289.483831826389	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTTAAACTCTGAGCCC	NA	False	NA	19	True	AATAAA	-29	NA	135490845	135493977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_135490892_135491052_135491123_135493417_135493478_135493766
ENSMUSG00000084762.2_6	chr2	+	545	6	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	272.981024981591	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTTAAACTCTGAGCCC	NA	False	NA	19	True	AATAAA	-29	NA	135488443	135493977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135492537_135492672_135493417_135493478_135493766
ENSMUSG00000084786.10_0	chr9	+	1399	4	ISM	ENSMUSG00000084786.10	ENSMUST00000161882.8	489	5	-54	-20	-7	12	intron_retention	FALSE	canonical	3	1048	junction_1	67.7462586092808	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGTGTGAGAGTTGTG	NA	False	NA	30	True	AATAAA	-27	NA	20556109	20558085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917
ENSMUSG00000084786.10_1	chr9	+	421	5	FSM	ENSMUSG00000084786.10	ENSMUST00000129414.9	2114	5	1506	187	3	0	multi-exon	FALSE	canonical	3	1046	junction_4	63.2114507031756	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	18	True	AATAAA	-15	NA	20556119	20558073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556956_20557911
ENSMUSG00000084786.10_3	chr9	+	558	4	FSM	ENSMUSG00000084786.10	ENSMUST00000154429.9	2511	4	1954	-1	-2	0	multi-exon	FALSE	canonical	3	1046	junction_3	4.78423336480244	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTGCTGTCATACTTG	NA	False	NA	17	True	AATAAA	-14	NA	20556127	20558072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_20556190_20556488_20556786_20556917_20556956_20557911
ENSMUSG00000084786.10_9	chr9	+	499	4	FSM	ENSMUSG00000084786.10	ENSMUST00000160124.2	501	4	13	-11	13	9	multi-exon	FALSE	canonical	3	1046	junction_3	68.2658203072535	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATACTTGTGTGAGAGTT	NA	False	NA	27	True	AATAAA	-24	NA	20556349	20558082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_20556556_20556701_20556786_20556917_20556956_20557911
ENSMUSG00000084799.8_1	chr1	+	2401	3	NNC	ENSMUSG00000084799.8	novel	1576	4	NA	NA	24269	0	intron_retention	FALSE	canonical	1	3	junction_1	3	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTATGAGCTTTATATGC	414	False	NA	NA	False	AATAAA	-13	NA	63178167	63197449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_63178431_63183277_63183345_63195378
ENSMUSG00000084817.4_0	chr1	-	543	1	FSM	ENSMUSG00000084817.4	ENSMUST00000153604.2	423	1	21	-141	21	141	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTCAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	AATAAA	-17	NA	45896893	45896350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_45896400_45896900
ENSMUSG00000084830.3_0	chrX	-	338	1	FSM	ENSMUSG00000084830.3	ENSMUST00000117527.2	174	1	-56	-108	-56	108	mono-exon	FALSE	NA	NA	NA	NA	NA	205	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGATTAGATAAAC	NA	False	NA	NA	False	AATAAA	-13	NA	20447609	20447271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_20447300_20447600
ENSMUSG00000084883.3_0	chr12	-	4280	6	FSM	ENSMUSG00000084883.3	ENSMUST00000222310.2	4298	6	19	-1	19	1	multi-exon	FALSE	canonical	3	57	junction_4	9.83056458195561	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGAGTGTGTAGTGCTT	NA	False	NA	-6	True	AATAAA	-20	NA	108241665	108169859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_108172694_108173380_108173480_108174092_108174189_108177773_108177882_108187967_108188042_108240596
ENSMUSG00000084883.3_1	chr12	-	4277	6	NNC	ENSMUSG00000084883.3	novel	4298	6	NA	NA	19	1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	24.5307969703391	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGAGTGTGTAGTGCTT	NA	False	NA	-6	True	AATAAA	-20	NA	108241665	108169859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_108172694_108173380_108173480_108174092_108174189_108177773_108177879_108187967_108188042_108240596
ENSMUSG00000084883.3_2	chr12	-	4326	7	FSM	ENSMUSG00000084883.3	ENSMUST00000136175.3	1302	7	-279	-2745	13	2	multi-exon	TRUE	canonical	2	6	junction_4	32.190405748021	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGAGTGTGTAGTGCTTT	NA	False	NA	-5	True	AATAAA	-21	NA	108241671	108169858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_108172694_108173380_108173480_108174092_108174189_108177773_108177882_108183045_108183085_108187967_108188042_108240596
ENSMUSG00000084883.3_3	chr12	-	2082	1	Genic_Genomic	ENSMUSG00000084883.3	novel	NA	NA	NA	NA	69451	1	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGAGTGTGTAGTGCTT	7347	False	NA	-6	True	AATAAA	-20	NA	108171941	108169859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_108169900_108171900
ENSMUSG00000084885.8_0	chrX	+	923	5	NIC	ENSMUSG00000084885.8	novel	858	5	NA	NA	24	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	1.08972473588517	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCAACTTTATTTGTCT	NA	False	NA	NA	False	NA	NA	NA	151152047	151199690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_151152113_151152837_151153019_151168640_151168749_151186308_151186474_151199286
ENSMUSG00000084910.2_0	chr4	+	800	1	Genic_Genomic	ENSMUSG00000084910.2	novel	NA	NA	NA	NA	-56	-13261	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTAATGCTGACCCGCCG	NA	False	NA	NA	False	AATAAA	-15	NA	72119528	72120328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_72119500_72120300
ENSMUSG00000084919.2_1	chr2	+	852	5	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	0	2653	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.2621655221252	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTTAAGAGTGCCTGTG	NA	False	NA	7	True	ATTAAA	-18	NA	162232732	162238518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_162232958_162233218_162233320_162236359_162236484_162238066_162238330_162238379
ENSMUSG00000084950.8_0	chr6	+	1680	2	FSM	ENSMUSG00000084950.8	ENSMUST00000134600.2	1434	2	-222	-24	-222	24	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTTTAAACTATATTGTA	NA	False	NA	NA	False	NA	NA	NA	87957642	87961186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_87958078_87959941
ENSMUSG00000084957.4_0	chr19	-	4275	1	NIC	ENSMUSG00000084957.4	novel	2043	4	NA	NA	8890	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATATTGTTGGGCTTGTA	NA	False	NA	NA	False	AATAAA	-11	NA	53923721	53919446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_53919400_53923700
ENSMUSG00000084957.4_1	chr19	-	762	4	FSM	ENSMUSG00000084957.4	ENSMUST00000135402.4	2043	4	126	1155	-23	-2	multi-exon	FALSE	canonical	3	76	junction_3	53.0806514236172	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATATTGTTGGGCTTGTA	NA	False	NA	NA	False	AATAAA	-11	NA	53932932	53919446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932847
ENSMUSG00000084957.4_2	chr19	-	684	3	ISM	ENSMUSG00000084957.4	ENSMUST00000236370.2	662	4	647	-93	599	-1	3prime_fragment	FALSE	canonical	3	143	junction_2	31.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTGGGCTTGTACACTA	NA	False	NA	NA	False	AATAAA	-16	NA	53932012	53919441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_53919934_53920560_53920637_53931896
ENSMUSG00000084957.4_5	chr19	-	717	4	FSM	ENSMUSG00000084957.4	ENSMUST00000236370.2	662	4	33	-88	12	-2	multi-exon	FALSE	canonical	3	94	junction_3	45.8427263102398	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATATTGTTGGGCTTGTA	NA	False	NA	NA	False	AATAAA	-11	NA	53932626	53919446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932586
ENSMUSG00000084987.2_0	chr4	+	4310	2	FSM	ENSMUSG00000084987.2	ENSMUST00000132106.2	738	2	-108	-3464	10	1966	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAAAAATCTTCCTGTGT	2936	False	NA	NA	False	NA	NA	NA	154685663	154690625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_154685865_154686516
ENSMUSG00000084987.2_1	chr4	+	2288	2	FSM	ENSMUSG00000084987.2	ENSMUST00000144347.2	387	2	69	-1970	-49	1970	multi-exon	FALSE	canonical	2	6	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATCTTCCTGTGTGTCT	2995	False	NA	NA	False	NA	NA	NA	154685722	154690629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_154685865_154688483
ENSMUSG00000085028.3_0	chr2	+	1452	1	Genic_Genomic	ENSMUSG00000085028.3	novel	NA	NA	NA	NA	1733	9	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTTTGCTTGTTTAGTT	NA	False	NA	4	True	ATTAAA	-14	NA	181027936	181029388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_181027900_181029400
ENSMUSG00000085028.3_5	chr2	+	4014	2	Fusion	ENSMUSG00000090077.10_ENSMUSG00000085028.3	novel	960	4	NA	NA	-826	-63	intron_retention	FALSE	canonical	3	18	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGAAGCTCAGGTGT	NA	False	NA	-68	True	GGGGCT	-13	NA	181025216	181029316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_181028800_181028885
ENSMUSG00000085035.2_0	chr11	-	496	2	NNC	ENSMUSG00000085035.2	novel	627	2	NA	NA	-7431	187	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGTCTTGGCCTCCAT	9125	False	NA	NA	False	NA	NA	NA	20103775	20095379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_20095695_20103594
ENSMUSG00000085042.9_0	chr5	-	370	3	FSM	ENSMUSG00000085042.9	ENSMUST00000222613.2	363	3	56	-63	56	-1	multi-exon	FALSE	canonical	3	24	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCTGGACCCTCTCCGTG	NA	False	NA	-9	True	ATTAAA	-20	NA	135041586	135040976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135041187_135041283_135041405_135041547
ENSMUSG00000085058.3_0	chr6	+	1715	4	NIC	ENSMUSG00000085058.3	novel	370	4	NA	NA	-3	-5	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAGAACACAGCATTGTT	NA	False	NA	NA	False	AATAAA	-11	NA	39504443	39521415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_39504579_39506382_39506457_39506625_39506754_39520037
ENSMUSG00000085085.3_1	chr4	-	961	2	FSM	ENSMUSG00000085085.3	ENSMUST00000149472.3	1009	2	66	-18	66	18	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTGGCTCTTTTTGCT	NA	False	NA	0	True	AATAAA	-34	NA	128951710	128943871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_128944703_128951580
ENSMUSG00000085101.8_11	chr4	+	2493	4	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	13	1907	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	47.2040487905669	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	NA	False	NA	19	True	NA	NA	NA	145136848	145178233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145176036
ENSMUSG00000085101.8_9	chr4	+	2436	3	FSM	ENSMUSG00000085101.8	ENSMUST00000150529.2	545	3	16	-1907	16	1907	multi-exon	FALSE	canonical	3	82	junction_2	10.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	NA	False	NA	19	True	NA	NA	NA	145136851	145178233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_145136997_145138756_145138851_145176036
ENSMUSG00000085103.4_0	chr2	-	1428	4	NNC	ENSMUSG00000085103.4	novel	474	3	NA	NA	-3846	11947	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	6.16441400296898	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATAACACCTGTTCTT	NA	False	NA	NA	False	AATAAA	-29	NA	175863505	175845868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_175847006_175859274_175859336_175859528_175859656_175863402
ENSMUSG00000085105.3_0	chr7	+	2013	2	FSM	ENSMUSG00000085105.3	ENSMUST00000127010.2	4175	2	6	2156	6	-2156	multi-exon	FALSE	canonical	3	45	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCATAATTCCTTTGTCT	NA	False	NA	NA	False	ACTAAA	-23	NA	33933807	33937476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_33933921_33935576
ENSMUSG00000085105.3_1	chr7	+	173	1	FSM	ENSMUSG00000085105.3	ENSMUST00000205940.2	1112	1	925	14	925	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGCCAGG	NA	False	NA	NA	False	NA	NA	NA	33934790	33934963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_33934800_33935000
ENSMUSG00000085133.3_0	chr14	+	2930	1	ISM	ENSMUSG00000085133.3	ENSMUST00000130256.3	4715	2	2335	1	2335	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTGGCCTTTTTCTCCG	NA	False	NA	NA	False	AATAAA	-19	NA	121488452	121491382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_121488500_121491400
ENSMUSG00000085148.2_0	chr11	+	1613	3	FSM	ENSMUSG00000085148.2	ENSMUST00000149940.2	1752	3	136	3	31	-3	multi-exon	FALSE	canonical	3	9	junction_2	6.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTTTTAAAATTTTTAC	3974	False	NA	5	True	AATAAA	-16	NA	75352500	75357499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_75352582_75354518_75354684_75356132
ENSMUSG00000085148.2_3	chr11	+	1622	1	NIC	ENSMUSG00000085148.2	novel	1752	3	NA	NA	3408	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTTTTAAAATTTTTAC	7351	False	NA	5	True	AATAAA	-16	NA	75355877	75357499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_75355900_75357500
ENSMUSG00000085152.2_3	chr11	-	712	2	FSM	ENSMUSG00000085152.2	ENSMUST00000128078.2	581	2	16	-147	16	147	multi-exon	FALSE	canonical	3	19	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGATCAGATTTTTA	9055	False	NA	NA	False	NA	NA	NA	88887354	88883718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_88884304_88887227
ENSMUSG00000085156.9_0	chr11	-	569	4	FSM	ENSMUSG00000085156.9	ENSMUST00000147762.9	611	4	40	2	24	-1	multi-exon	FALSE	canonical	3	436	junction_3	5.24933858267454	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGTGTTGATCGGGTTT	NA	False	NA	-3	True	NA	NA	NA	6478739	6475592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6475818_6476354_6476438_6478305_6478375_6478547
ENSMUSG00000085156.9_12	chr11	-	2462	3	NIC	ENSMUSG00000085156.9	novel	611	4	NA	NA	1	-2	intron_retention	FALSE	canonical	3	436	junction_2	5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTGTGTTGATCGGGTT	NA	False	NA	-4	True	NA	NA	NA	6478765	6475593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_6475818_6476354_6478375_6478547
ENSMUSG00000085156.9_2	chr11	-	379	3	FSM	ENSMUSG00000085156.9	ENSMUST00000124818.3	771	3	391	1	388	0	multi-exon	FALSE	canonical	3	446	junction_1	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGTTGATCGGGTTTG	NA	False	NA	-2	True	NA	NA	NA	6478375	6475591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6475818_6476354_6476438_6478305
ENSMUSG00000085156.9_3	chr11	-	2601	2	FSM	ENSMUSG00000085156.9_ENSMUSG00000064513.3	ENSMUST00000129570.3	1631	2	-970	0	34	0	multi-exon	FALSE	canonical	3	446	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGTTGATCGGGTTTG	NA	False	NA	-2	True	NA	NA	NA	6478729	6475591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6475818_6476354
ENSMUSG00000085156.9_7	chr11	-	166	1	ISM	ENSMUSG00000085156.9	ENSMUST00000124818.3	771	3	3009	1	2002	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGTTGATCGGGTTTG	290	False	NA	-2	True	NA	NA	NA	6475757	6475591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_6475600_6475800
ENSMUSG00000085172.2_0	chr18	+	980	1	FSM	ENSMUSG00000085172.2	ENSMUST00000153606.2	772	1	33	-241	33	241	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGATTAAAAAAAAACAAT	7896	False	NA	-11	True	AATAAA	-7	NA	36743043	36744023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36743000_36744000
ENSMUSG00000085175.8_1	chr11	-	705	3	FSM	ENSMUSG00000085175.8	ENSMUST00000152784.8	686	3	-23	4	-23	-4	multi-exon	FALSE	canonical	2	4	junction_1	9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGAAGTTCATTATGTC	NA	False	NA	0	True	AATAAA	-18	NA	82671891	82670430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_82670762_82670960_82671125_82671681
ENSMUSG00000085175.8_2	chr11	-	894	2	FSM	ENSMUSG00000085175.8	ENSMUST00000136051.2	655	2	-13	-226	-13	-4	multi-exon	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGAAGTTCATTATGTC	NA	False	NA	0	True	AATAAA	-18	NA	82671881	82670430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_82671125_82671681
ENSMUSG00000085175.8_3	chr11	-	1461	1	Genic_Genomic	ENSMUSG00000085175.8	novel	NA	NA	NA	NA	-23	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGAAGTTCATTATGTC	NA	False	NA	0	True	AATAAA	-18	NA	82671891	82670430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_82670400_82671900
ENSMUSG00000085184.10_0	chr1	-	183	1	ISM	ENSMUSG00000085184.10	ENSMUST00000132370.9	599	3	12343	11	12343	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAGAATGGACAATA	NA	False	NA	NA	False	NA	NA	NA	172365893	172365710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_172365700_172365900
ENSMUSG00000085208.4_0	chr11	+	2756	2	FSM	ENSMUSG00000085208.4	ENSMUST00000128960.2	4423	2	17	1650	4	-1650	multi-exon	FALSE	canonical	3	24	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGATCTCCGTCTCTGTTT	NA	False	NA	4	True	NA	NA	NA	86092212	86100368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_86092379_86097778
ENSMUSG00000085208.4_2	chr11	+	1938	1	ISM	ENSMUSG00000085208.4	ENSMUST00000128960.2	4423	2	6239	1646	6226	-1646	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCCGTCTCTGTTTCTGT	NA	False	NA	8	True	NA	NA	NA	86098434	86100372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_86098400_86100400
ENSMUSG00000085227.2_0	chr5	+	925	2	FSM	ENSMUSG00000085227.2	ENSMUST00000141454.2	624	2	19	-320	4	-9	multi-exon	FALSE	canonical	3	10	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACAAGCATGAGGACACAA	6205	False	NA	NA	False	NA	NA	NA	138262334	138264914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_138262364_138264018
ENSMUSG00000085241.8_0	chr4	-	802	2	ISM	ENSMUSG00000028896.14	ENSMUST00000155129.2	507	6	-28	14111	-28	-12443	5prime_fragment	FALSE	canonical	3	1001	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132080944	132079244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_132080010_132080907
ENSMUSG00000085241.8_1	chr4	-	383	3	FSM	ENSMUSG00000085241.8	ENSMUST00000152943.8	437	3	53	1	0	0	multi-exon	FALSE	canonical	3	959	junction_1	21	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132080944	132079244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132079555_132079973_132080010_132080907
ENSMUSG00000085271.8_3	chr5	-	158	1	ISM	ENSMUSG00000085271.8	ENSMUST00000137398.8	906	5	27262	0	27259	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGCAAAATACTGGAGC	NA	False	NA	NA	False	AATAAA	-31	NA	111882307	111882149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_111882100_111882300
ENSMUSG00000085279.2_0	chr16	+	156	1	ISM	ENSMUSG00000085279.2	ENSMUST00000123318.2	1428	2	2350	825	2350	-825	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTATTTATTAATAAAGTA	NA	False	NA	NA	False	NA	NA	NA	90783144	90783300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_90783100_90783300
ENSMUSG00000085317.2_2	chr2	+	2382	3	FSM	ENSMUSG00000085317.2	ENSMUST00000130859.2	727	3	-1	-1654	-1	1654	multi-exon	FALSE	canonical	0	0	junction_1	4	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAACAAAAGCACCAA	NA	False	NA	NA	False	NA	NA	NA	155433049	155436425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_155433232_155433942_155434089_155434371
ENSMUSG00000085334.8_0	chr4	+	1811	4	Fusion	ENSMUSG00000085334.8_ENSMUSG00000028820.14	novel	574	3	NA	NA	-2526	-6	multi-exon	FALSE	canonical	3	45	junction_1	134.514765814844	21	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTGTCTTTGTTCAA	NA	False	NA	12	True	AATAAA	-13	NA	126924997	126930800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_126926599_126929600_126929648_126930355_126930443_126930724
ENSMUSG00000085334.8_1	chr4	+	2314	3	FSM	ENSMUSG00000085334.8	ENSMUST00000130659.8	574	3	-1746	6	-27	-6	multi-exon	FALSE	canonical	3	313	junction_2	16	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTGTCTTTGTTCAA	NA	False	NA	12	True	AATAAA	-13	NA	126927496	126930800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_126929648_126930355_126930443_126930724
ENSMUSG00000085334.8_2	chr4	+	165	2	ISM	ENSMUSG00000085334.8	ENSMUST00000130659.8	574	3	1111	6	779	-6	3prime_fragment	FALSE	canonical	3	313	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTGTCTTTGTTCAA	NA	False	NA	12	True	AATAAA	-13	NA	126930353	126930800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_126930443_126930724
ENSMUSG00000085334.8_3	chr4	+	1250	2	FSM	ENSMUSG00000085334.8	ENSMUST00000137457.2	462	2	-732	-56	-400	-6	multi-exon	FALSE	canonical	3	345	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTGTCTTTGTTCAA	NA	False	NA	12	True	AATAAA	-13	NA	126928842	126930800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_126929648_126930355
ENSMUSG00000085347.2_0	chr10	+	841	2	FSM	ENSMUSG00000085347.2	ENSMUST00000143122.2	1218	2	-283	660	68	16	multi-exon	FALSE	canonical	3	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGTGGCTATTTGAGG	NA	False	NA	NA	False	NA	NA	NA	62176102	62185646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_62176563_62185265
ENSMUSG00000085355.3_0	chr6	+	1764	2	FSM	ENSMUSG00000085355.3	ENSMUST00000154673.2	1747	2	-19	2	-19	-2	multi-exon	FALSE	canonical	3	14	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTCAGTAATTCCGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	148846345	148848625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_148847919_148848434
ENSMUSG00000085379.2_0	chr11	-	171	1	ISM	ENSMUSG00000085379.2	ENSMUST00000131221.2	3201	2	11729	403	11729	-403	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTTAAAAAAGACAAGCC	NA	False	NA	NA	False	NA	NA	NA	58857147	58856976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_58857000_58857100
ENSMUSG00000085385.8_0	chr2	-	948	6	NIC	ENSMUSG00000085385.8	novel	933	6	NA	NA	1	5	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	23.4059821413245	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGCCTTTTAAATCTGT	8360	False	NA	-12	True	AATAAA	-17	NA	158203429	158197699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202383_158202520_158202862_158202991_158203324
ENSMUSG00000085385.8_1	chr2	-	2774	3	ISM	ENSMUSG00000085385.8	ENSMUST00000141809.8	1553	6	1958	-1602	-1088	-5	3prime_fragment	FALSE	canonical	3	94	junction_2	2	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGCTTGGTCTCGTGAG	NA	False	NA	-3	True	NA	NA	NA	158201472	158195624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_158197962_158199117_158199184_158201101
ENSMUSG00000085385.8_12	chr2	-	702	4	NIC	ENSMUSG00000085385.8	novel	1553	6	NA	NA	889	5	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	29.2726645334669	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGCCTTTTAAATCTGT	9283	False	NA	-12	True	AATAAA	-17	NA	158202506	158197699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202383
ENSMUSG00000085385.8_14	chr2	-	2308	4	ISM	ENSMUSG00000085385.8	ENSMUST00000154030.8	2007	5	13	20	1	0	intron_retention	FALSE	canonical	3	82	junction_3	6.79869268479038	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8360	False	NA	-17	True	AATAAA	-12	NA	158203429	158197704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_158197962_158199117_158199184_158201101_158202520_158202862
ENSMUSG00000085385.8_16	chr2	-	1294	5	NIC	ENSMUSG00000085385.8	novel	1553	6	NA	NA	1	5	intron_retention	FALSE	canonical	3	34	junction_3	25.5147016443461	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGCCTTTTAAATCTGT	8348	False	NA	-12	True	AATAAA	-17	NA	158203441	158197699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202383_158202520_158202862
ENSMUSG00000085385.8_2	chr2	-	3921	4	FSM	ENSMUSG00000085385.8	ENSMUST00000149667.8	3896	4	-8	-17	1	-3	multi-exon	FALSE	canonical	3	64	junction_3	13.8884444373331	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGTGTCAACCCATGA	8348	False	NA	0	True	AATAAA	-29	NA	158203441	158197687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_158197962_158199117_158202520_158202862_158202991_158203324
ENSMUSG00000085385.8_3	chr2	-	2251	1	FSM	ENSMUSG00000085385.8	ENSMUST00000186993.2	3144	1	888	5	888	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGCTTGGTCTCGTGAG	NA	False	NA	-3	True	NA	NA	NA	158197875	158195624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_158195600_158197900
ENSMUSG00000085385.8_4	chr2	-	866	6	FSM	ENSMUSG00000085385.8	ENSMUST00000133449.8	933	6	64	3	-3	-3	multi-exon	FALSE	canonical	2	8	junction_3	32.8048776861003	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGTGTCAACCCATGA	8353	False	NA	0	True	AATAAA	-29	NA	158203436	158197687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_158197962_158199117_158199184_158201101_158201252_158202383_158202520_158202862_158202991_158203324
ENSMUSG00000085385.8_5	chr2	-	1989	5	FSM	ENSMUSG00000085385.8	ENSMUST00000154030.8	2007	5	3	15	0	5	multi-exon	FALSE	canonical	3	64	junction_4	13.2193040664023	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGCCTTTTAAATCTGT	8350	False	NA	-12	True	AATAAA	-17	NA	158203439	158197699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_158197962_158199117_158199184_158201101_158202520_158202862_158202991_158203324
ENSMUSG00000085385.8_7	chr2	-	2970	6	NIC	ENSMUSG00000085385.8	novel	1046	7	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	30.9476978142155	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGCTTGGTCTCGTGAG	8350	False	NA	-3	True	NA	NA	NA	158203439	158195624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202446_158202520_158202862_158202991_158203324
ENSMUSG00000085385.8_9	chr2	-	3241	2	ISM	ENSMUSG00000085385.8	ENSMUST00000154242.2	346	3	363	-2317	363	-5	3prime_fragment	FALSE	canonical	3	98	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGCTTGGTCTCGTGAG	NA	False	NA	-3	True	NA	NA	NA	158200021	158195624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_158197962_158199117
ENSMUSG00000085389.8_0	chr4	+	1880	3	ISM	ENSMUSG00000085389.8	ENSMUST00000147634.8	564	4	396	-1610	-38	1473	3prime_fragment	FALSE	canonical	2	2	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGACATTTAGTGACCCT	5386	False	NA	12	True	AATAAA	-14	NA	129854562	129858923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_129854602_129854991_129855074_129857164
ENSMUSG00000085389.8_1	chr4	+	816	2	ISM	ENSMUSG00000085389.8	ENSMUST00000147634.8	564	4	330	1611	-104	-1611	internal_fragment	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTGTCCAGTGTAGAATA	5320	False	NA	NA	False	AATAAA	-10	NA	129854496	129855702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_129854602_129854991
ENSMUSG00000085396.8_20	chrX	-	2772	6	NIC	ENSMUSG00000085396.8	novel	1754	5	NA	NA	381	-1186	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	27.4852687816583	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTAAATATTTTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	49658695	49645813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_49647262_49649685_49649884_49651556_49651832_49653689_49653845_49656416_49656571_49658153
ENSMUSG00000085396.8_26	chrX	-	1375	1	ISM	ENSMUSG00000085396.8	ENSMUST00000203933.3	5555	20	70564	3	381	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTGATGTGAAGATTGG	NA	False	NA	-12	True	AATAAA	-15	NA	49653379	49652004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_49652000_49653400
ENSMUSG00000085396.8_31	chrX	-	2556	3	ISM	ENSMUSG00000085396.8	ENSMUST00000204991.3	1754	5	359	4992	359	-5	5prime_fragment	FALSE	canonical	3	87	junction_1	14	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCCTTGATGTGAAGATT	NA	False	NA	-14	True	AATAAA	-13	NA	49658717	49652006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_49653845_49656416_49656571_49658153
ENSMUSG00000085396.8_40	chrX	-	1920	2	ISM	ENSMUSG00000085396.8	ENSMUST00000204991.3	1754	5	2587	4983	2587	4	internal_fragment	FALSE	canonical	3	87	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGAAGATTGGAAAGGTA	NA	False	NA	-5	True	AATAAA	-22	NA	49656489	49651997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_49653845_49656416
ENSMUSG00000085396.8_49	chrX	-	6826	2	NIC	ENSMUSG00000085396.8	novel	715	5	NA	NA	17	-8959	intron_retention	FALSE	canonical	3	63	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49724121	49713346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_49719873_49723821
ENSMUSG00000085408.2_0	chr4	-	2299	1	NIC	ENSMUSG00000085408.2	novel	2436	3	NA	NA	15	-5584	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGAAAATTGCCTTTTT	9400	False	NA	NA	False	NA	NA	NA	116454812	116452513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_116452500_116454800
ENSMUSG00000085412.8_1	chr6	+	1021	2	ISM	ENSMUSG00000085412.8	ENSMUST00000155758.2	408	3	-58	4489	-4	-4489	5prime_fragment	FALSE	canonical	3	220	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTCTTACTCAATTCTC	774	False	NA	NA	False	NA	NA	NA	52079924	52084679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_52080017_52083750
ENSMUSG00000085412.8_10	chr6	+	1330	3	FSM	ENSMUSG00000085412.8	ENSMUST00000155758.2	408	3	-51	-871	3	531	multi-exon	FALSE	canonical	3	43	junction_2	88.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTACCAAATATTACACAAC	781	False	NA	NA	False	AATAAA	-11	NA	52079931	52090039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_52080017_52083750_52083877_52088920
ENSMUSG00000085412.8_2	chr6	+	898	3	FSM	ENSMUSG00000085412.8	ENSMUST00000125374.8	391	3	30	-537	-15	537	multi-exon	FALSE	canonical	3	144	junction_2	38	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATTACACAACTAAGAT	808	False	NA	NA	False	AATAAA	-17	NA	52079958	52090045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_52080017_52083750_52083877_52089331
ENSMUSG00000085412.8_24	chr6	+	1019	3	FSM	ENSMUSG00000085412.8	ENSMUST00000189071.7	511	3	-15	-493	-15	493	multi-exon	FALSE	canonical	3	13	junction_2	103.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTCAAAAAACTGAAATTT	808	False	NA	NA	False	AATATA	-8	NA	52079958	52091157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_52080017_52083750_52083877_52090322
ENSMUSG00000085436.2_0	chr2	+	1043	2	FSM	ENSMUSG00000085436.2	ENSMUST00000129364.2	1127	2	86	-2	86	2	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTTGGATACGGTGT	7326	False	NA	NA	False	NA	NA	NA	164753359	164761875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_164753671_164761143
ENSMUSG00000085438.2_0	chr2	+	2047	3	FSM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	33	-699	27	699	multi-exon	FALSE	canonical	3	71	junction_2	178.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACATGTTTAAGGTAA	NA	False	NA	13	True	AATAAA	-10	NA	119424810	119431926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119424916_119426739_119426824_119430068
ENSMUSG00000085438.2_1	chr2	+	2216	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	27	6057	27	699	multi-exon	FALSE	canonical	3	345	junction_2	41.5	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACATGTTTAAGGTAA	NA	False	NA	13	True	AATAAA	-10	NA	119424810	119431926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_119424916_119426739_119426993_119430068
ENSMUSG00000085438.2_13	chr2	+	4257	1	ISM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	8931	12	8931	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAAACTTGATTGTGTGT	NA	False	NA	12	True	AATAAA	-18	NA	119433714	119437971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119433700_119438000
ENSMUSG00000085438.2_15	chr2	+	3425	1	ISM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	9765	10	9765	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACTTGATTGTGTGTTG	NA	False	NA	14	True	AATAAA	-20	NA	119434548	119437973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119434500_119438000
ENSMUSG00000085438.2_2	chr2	+	1376	2	ISM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	33	3217	27	-3217	5prime_fragment	FALSE	canonical	3	428	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119424810	119428010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_119424916_119426739
ENSMUSG00000085442.2_0	chr15	-	206	1	FSM	ENSMUSG00000085442.2	ENSMUST00000148102.2	466	1	310	-50	310	50	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	67	False	NA	NA	False	AATATA	-16	NA	37943726	37943520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_37943500_37943700
ENSMUSG00000085482.2_0	chr4	-	203	1	ISM	ENSMUSG00000085482.2	ENSMUST00000126646.2	572	2	991	197	991	-197	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAATACAATTCTAAAC	NA	False	NA	NA	False	AATAAA	-17	NA	74168960	74168757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_74168800_74169000
ENSMUSG00000085492.8_0	chr17	-	1274	3	FSM	ENSMUSG00000085492.8	ENSMUST00000143828.2	781	3	-493	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	30	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905741	71895551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71895980_71897482_71897518_71904930
ENSMUSG00000085492.8_1	chr17	-	1141	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	34.8807492274273	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905732	71895551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_71895980_71897482_71897518_71898852_71898943_71905144
ENSMUSG00000085492.8_2	chr17	-	1359	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	34.8807492274273	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905736	71895551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_71895980_71897482_71897518_71898852_71898943_71904930
ENSMUSG00000085492.8_3	chr17	-	1059	3	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	31	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905740	71895551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_71895980_71897482_71897518_71905144
ENSMUSG00000085492.8_6	chr17	-	2781	2	NIC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-4	0	intron_retention	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905745	71895551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_71897518_71904930
ENSMUSG00000085492.8_7	chr17	-	1230	2	NIC	ENSMUSG00000085492.8	novel	781	3	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905732	71895551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_71895980_71904930
ENSMUSG00000085525.8_47	chr4	+	3926	6	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	13	41582	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	167.233489469065	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGCAATTATGTCCATCC	NA	False	NA	NA	False	NA	NA	NA	146206913	146256586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146250678_146250737_146251579_146251707_146253158
ENSMUSG00000085525.8_48	chr4	+	3977	7	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	14	41588	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_5	153.60302369709	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTCCATCCGCTACG	NA	False	NA	NA	False	NA	NA	NA	146206914	146256592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146240246_146240293_146250678_146250737_146251579_146251707_146253158
ENSMUSG00000085525.8_80	chr4	+	3895	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	14	41588	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	159.401882046606	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTCCATCCGCTACG	NA	False	NA	NA	False	NA	NA	NA	146206914	146256592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_146207052_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
ENSMUSG00000085556.2_0	chrX	-	3738	8	NIC	ENSMUSG00000085556.2	novel	636	6	NA	NA	20	4760	combination_of_known_splicesites	FALSE	canonical	3	6	junction_4	7.74069553379661	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTATTTGAAATTAACAT	1154	False	NA	NA	False	AATAAA	-4	NA	134053325	134018866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_134021224_134022418_134023001_134023443_134023744_134044969_134045069_134048327_134048426_134050176_134050266_134051692_134051783_134053202
ENSMUSG00000085556.2_5	chrX	-	3657	7	NIC	ENSMUSG00000085556.2	novel	636	6	NA	NA	3	4760	combination_of_known_splicesites	FALSE	canonical	2	7	junction_4	7.80313327381308	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTATTTGAAATTAACAT	1137	False	NA	NA	False	AATAAA	-4	NA	134053342	134018866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_134021224_134022418_134023001_134023443_134023744_134044969_134045069_134050176_134050266_134051692_134051783_134053202
ENSMUSG00000085562.8_0	chr4	-	1455	5	NIC	ENSMUSG00000085562.8	novel	3623	7	NA	NA	-42	339	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	1.4790199457749	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTTTGAATGCTTGGCC	NA	False	NA	NA	False	NA	NA	NA	125816145	125783868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_125784527_125785276_125785384_125786974_125787070_125812280_125812600_125815869
ENSMUSG00000085622.10_0	chr12	-	914	3	FSM	ENSMUSG00000085622.10	ENSMUST00000136690.3	1063	3	240	-91	3	91	multi-exon	FALSE	canonical	3	10	junction_2	2	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTTGTTTTCTCCTTTG	NA	False	NA	NA	False	AATAAA	-23	NA	71062366	71056477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_71057254_71061229_71061282_71062280
ENSMUSG00000085628.5_0	chr11	+	3108	3	NIC	ENSMUSG00000085628.5	novel	635	4	NA	NA	30	2611	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	1.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCACCTTCTCCTACTGT	NA	False	NA	NA	False	NA	NA	NA	85126026	85131741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_85126159_85128236_85128341_85128869
ENSMUSG00000085634.3_0	chr13	-	681	2	FSM	ENSMUSG00000085634.3	ENSMUST00000132880.3	663	2	-19	1	-19	-1	multi-exon	FALSE	canonical	3	19	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTGTTTTTTTTGTTTTG	NA	False	NA	NA	False	ATTAAA	-13	NA	111686464	111658884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_111659245_111686143
ENSMUSG00000085655.6_0	chr3	+	750	3	FSM	ENSMUSG00000085655.6	ENSMUST00000122858.6	490	3	-142	-118	-142	118	multi-exon	FALSE	canonical	0	0	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAATAAATCTGCT	NA	False	NA	NA	False	NA	NA	NA	35987051	35996984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_35987317_35991752_35991848_35996594
ENSMUSG00000085682.3_0	chr2	-	3220	1	FSM	ENSMUSG00000085682.3	ENSMUST00000119751.2	496	1	-2509	-215	383	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAATTAAAAAACCC	NA	False	NA	-23	True	AATAAA	-27	NA	166345197	166341977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_166342000_166345200
ENSMUSG00000085682.3_17	chr2	-	2927	5	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	70	-17	intron_retention	FALSE	canonical	0	0	junction_3	15.1244834622542	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAATTAAAAAACCC	NA	False	NA	-23	True	AATAAA	-27	NA	166349921	166341977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_166344399_166345246_166345340_166347371_166347507_166348706_166348871_166349807
ENSMUSG00000085682.3_2	chr2	-	2660	3	FSM	ENSMUSG00000085682.3	ENSMUST00000123480.2	604	3	-2	-2054	-2	-6	multi-exon	FALSE	canonical	3	34	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACCCAACTCATTCTT	NA	False	NA	-12	True	AATAAA	-38	NA	166347506	166341966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_166344399_166345246_166345340_166347371
ENSMUSG00000085682.3_22	chr2	-	2542	2	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	74	-6	intron_retention	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACCCAACTCATTCTT	NA	False	NA	-12	True	AATAAA	-38	NA	166349917	166341966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_166344399_166349807
ENSMUSG00000085682.3_3	chr2	-	2661	3	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	79	-17	intron_retention	FALSE	canonical	3	12	junction_1	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAATTAAAAAACCC	NA	False	NA	-23	True	AATAAA	-27	NA	166349912	166341977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_166344399_166347371_166347507_166349807
ENSMUSG00000085682.3_4	chr2	-	3203	7	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	82	-6	intron_retention	FALSE	canonical	0	0	junction_6	13.2748718344933	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACCCAACTCATTCTT	NA	False	NA	-12	True	AATAAA	-38	NA	166349909	166341966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_166344399_166345246_166345340_166347371_166347507_166347939_166348119_166348706_166348871_166349381_166349480_166349807
ENSMUSG00000085682.3_5	chr2	-	3104	6	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	75	-14	intron_retention	FALSE	canonical	3	12	junction_5	9.90757286120067	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATTAAAAAACCCAAC	NA	False	NA	-20	True	AATAAA	-30	NA	166349916	166341974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_166344399_166345246_166345340_166347371_166347507_166347939_166348119_166348706_166348871_166349807
ENSMUSG00000085682.3_6	chr2	-	3011	5	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	72	-17	intron_retention	FALSE	canonical	3	12	junction_1	2.87228132326901	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAATTAAAAAACCC	NA	False	NA	-23	True	AATAAA	-27	NA	166349919	166341977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_166344399_166347371_166347507_166347939_166348119_166348706_166348871_166349807
ENSMUSG00000085682.3_7	chr2	-	2763	4	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	70	-17	intron_retention	FALSE	canonical	3	17	junction_3	8.52447456836295	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAATTAAAAAACCC	NA	False	NA	-23	True	AATAAA	-27	NA	166349921	166341977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_166344399_166345246_166345340_166347371_166347507_166349807
ENSMUSG00000085704.2_0	chr2	+	3149	2	FSM	ENSMUSG00000085704.2	ENSMUST00000150145.2	1905	2	0	-1244	0	1244	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCAGCTCACATGTCCAG	NA	False	NA	NA	False	AATAAA	-26	NA	179618645	179622050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_179618986_179619241
ENSMUSG00000085715.3_2	chrX	+	2327	2	NIC	ENSMUSG00000085715.3	novel	4306	4	NA	NA	25	970	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTAAGCTCAGTGACATGAC	NA	False	NA	NA	False	AATAAA	-11	NA	102491352	102526982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_102491578_102524880
ENSMUSG00000085715.3_4	chrX	+	2000	1	ISM	ENSMUSG00000085715.3	ENSMUST00000152916.2	4306	4	51101	340	34896	-340	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTCTGTGTTTTACTTAG	NA	False	NA	NA	False	ATTAAA	-12	NA	102526223	102528223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_102526200_102528200
ENSMUSG00000085715.3_6	chrX	+	1522	1	NIC	ENSMUSG00000085715.3	novel	4306	4	NA	NA	28	-33135	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTAAAATGTCTGCCAC	NA	False	NA	NA	False	ACTAAA	-26	NA	102491355	102492877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_102491400_102492900
ENSMUSG00000085741.9_0	chr2	-	192	1	Genic_Genomic	ENSMUSG00000085741.9	novel	NA	NA	NA	NA	3528	33	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGCTTTATATTTTGGT	NA	False	NA	NA	False	NA	NA	NA	156694508	156694316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_156694300_156694500
ENSMUSG00000085741.9_2	chr2	-	1303	3	NNC	ENSMUSG00000085741.9	novel	1196	3	NA	NA	-2	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	12	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAAAAAAGCCACCG	NA	False	NA	NA	False	NA	NA	NA	156704816	156694337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_156694611_156695350_156695939_156704374
ENSMUSG00000085741.9_5	chr2	-	1929	2	NIC	ENSMUSG00000085741.9	novel	1196	3	NA	NA	19	12	intron_retention	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAAAAAAGCCACCG	NA	False	NA	NA	False	NA	NA	NA	156704846	156694337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_156695939_156704518
ENSMUSG00000085761.2_0	chr4	+	630	2	FSM	ENSMUSG00000085761.2	ENSMUST00000126231.2	630	2	3	-3	3	3	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTTGTAAAGTTCTGTTA	NA	False	NA	NA	False	CATAAA	-15	NA	141745211	141756310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_141745442_141755910
ENSMUSG00000085783.4_0	chr16	+	1799	1	FSM	ENSMUSG00000085783.4	ENSMUST00000122292.2	1414	1	-26	-359	-26	359	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-17	NA	62537373	62539172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_62537400_62539200
ENSMUSG00000085787.4_0	chr4	-	382	1	FSM	ENSMUSG00000085787.4	ENSMUST00000136346.2	260	1	-54	-68	-54	68	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTTTTTTTTTTCAAA	NA	False	NA	NA	False	AATAAA	-7	NA	150399947	150399565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_150399600_150399900
ENSMUSG00000085791.5_0	chrX	-	253	1	FSM	ENSMUSG00000085791.5	ENSMUST00000122265.2	345	1	86	6	86	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAAACAAGAAAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	104322501	104322248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_104322200_104322500
ENSMUSG00000085793.3_0	chr12	+	2178	6	FSM	ENSMUSG00000085793.4	ENSMUST00000137170.4	2270	6	89	3	89	-3	multi-exon	FALSE	canonical	3	123	junction_1	15.7810012356631	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGAGGCCCAGGTTTTCC	NA	False	NA	2	True	AATAAA	-13	NA	84498284	84578344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509227_84576463
ENSMUSG00000085793.3_13	chr12	+	2146	5	ISM	ENSMUSG00000085793.4	ENSMUST00000137170.4	2270	6	4818	3	-8	-3	3prime_fragment	FALSE	canonical	3	138	junction_2	10.4731800328267	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGAGGCCCAGGTTTTCC	NA	False	NA	2	True	AATAAA	-13	NA	84503013	84578344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_84503090_84504722_84504761_84506392_84506460_84509142_84509227_84576463
ENSMUSG00000085793.3_4	chr12	+	2132	6	NNC	ENSMUSG00000085793.4	novel	2270	6	NA	NA	89	-3	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_5	52.6399088145107	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGAGGCCCAGGTTTTCC	NA	False	NA	2	True	AATAAA	-13	NA	84498284	84578344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509181_84576463
ENSMUSG00000085793.3_8	chr12	+	2136	5	NIC	ENSMUSG00000085793.4	novel	2270	6	NA	NA	93	-3	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	64.7881161942528	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGAGGCCCAGGTTTTCC	NA	False	NA	2	True	AATAAA	-13	NA	84498288	84578344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_84498318_84503014_84503090_84506392_84506460_84509142_84509227_84576463
ENSMUSG00000085794.6_1	chr6	-	1146	6	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5456	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	51.1218153042319	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCGGACTTTGCTTTGCTT	2740	False	NA	-4	True	NA	NA	NA	83675069	83669780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_83670449_83671329_83671456_83672566_83672606_83672689_83672797_83673961_83674051_83674952
ENSMUSG00000085794.6_18	chr6	-	1254	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5449	-4	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_3	37.4799946638203	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTAGATTTAGGCGGACT	2733	False	NA	-15	True	NA	NA	NA	83675076	83669791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_83670449_83671329_83671456_83672566_83672825_83673961_83674051_83674952
ENSMUSG00000085794.6_20	chr6	-	1374	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5443	-4	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	36.2724068680312	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTAGATTTAGGCGGACT	2727	False	NA	-15	True	NA	NA	NA	83675082	83669791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_83670449_83671329_83671456_83672566_83672939_83673961_83674051_83674952
ENSMUSG00000085794.6_23	chr6	-	2389	4	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5451	-4	intron_retention	FALSE	canonical	3	98	junction_3	15.6914697279198	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTAGATTTAGGCGGACT	2735	False	NA	-15	True	NA	NA	NA	83675074	83669791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_83670449_83671329_83671456_83672566_83674051_83674952
ENSMUSG00000085794.6_28	chr6	-	2009	2	FSM	ENSMUSG00000085794.6	ENSMUST00000155159.4	4063	2	84	1970	84	3	multi-exon	FALSE	canonical	2	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGTATGTAGCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	83687830	83679108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_83681003_83687715
ENSMUSG00000085795.9_0	chr8	+	3356	2	FSM	ENSMUSG00000085795.9	ENSMUST00000154256.3	3152	2	-208	4	-179	-4	multi-exon	FALSE	canonical	2	5	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACACCGTGGTGTGTTT	NA	False	NA	1	True	AATAAA	-17	NA	27467173	27471485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_27467640_27468595
ENSMUSG00000085802.3_0	chr15	+	1175	1	ISM	ENSMUSG00000085802.3	ENSMUST00000135583.3	3778	2	378	2857	378	-2857	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAAAAAAAAACATGC	NA	False	NA	NA	False	NA	NA	NA	79311797	79312972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_79311800_79313000
ENSMUSG00000085823.8_1	chr4	-	869	3	FSM	ENSMUSG00000085823.8	ENSMUST00000155349.8	849	3	-21	1	-10	-1	multi-exon	FALSE	canonical	2	3	junction_1	7	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGTGTTTTGCCTTCATG	NA	False	NA	NA	False	ATTAAA	-15	NA	137611258	137609681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_137610210_137610538_137610721_137611099
ENSMUSG00000085843.2_0	chr4	+	2231	4	NNC	ENSMUSG00000085843.2	novel	2251	3	NA	NA	-6	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	12.684198393627	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCTGCCTTGTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	98681998	98687142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_98682120_98684245_98684324_98685079_98686716_98686746
ENSMUSG00000085843.2_2	chr4	+	2257	3	FSM	ENSMUSG00000085843.2	ENSMUST00000133455.2	2251	3	-1	-5	-1	5	multi-exon	FALSE	canonical	3	22	junction_2	4	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCTGCCTTGTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	98682003	98687142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_98682120_98684245_98684324_98685079
ENSMUSG00000085843.2_5	chr4	+	2200	4	NNC	ENSMUSG00000085843.2	novel	2251	3	NA	NA	27	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	12.684198393627	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCTGCCTTGTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	98682031	98687142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_98682120_98684245_98684324_98685079_98686718_98686746
ENSMUSG00000085860.2_0	chr11	+	1614	4	FSM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	2	-1004	2	1004	multi-exon	FALSE	canonical	3	87	junction_3	12.3917535302941	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGATCGCATTCAACTGGA	NA	False	NA	12	True	AATAAA	-13	NA	97489338	97514723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_97489494_97505749_97505855_97509262_97509326_97513432
ENSMUSG00000085860.2_1	chr11	+	2439	3	ISM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	6	2274	6	1588	5prime_fragment	FALSE	canonical	3	106	junction_2	5.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATCTTAA	NA	False	NA	NA	False	NA	NA	NA	97489342	97511445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_97489494_97505749_97505855_97509262
ENSMUSG00000085912.3_0	chr17	-	3729	2	FSM	ENSMUSG00000085912.3	ENSMUST00000233478.2	1437	2	-27	-2265	21	644	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCTCAGCAGTTTAATGA	NA	False	NA	NA	False	NA	NA	NA	29291800	29275759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29279333_29291644
ENSMUSG00000085912.3_1	chr17	-	1184	1	ISM	ENSMUSG00000085912.3	ENSMUST00000133221.3	3218	2	18941	1625	12104	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACGTAGCTCCATCATTG	NA	False	NA	NA	False	NA	NA	NA	29279212	29278028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_29278000_29279200
ENSMUSG00000085918.2_0	chr4	+	1234	2	NNC	ENSMUSG00000085918.2	novel	2001	3	NA	NA	3411	-6	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTATGTGTATGGGTG	NA	False	NA	NA	False	NA	NA	NA	140541714	140544816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_140542139_140544006
ENSMUSG00000085929.2_0	chr2	+	161	2	FSM	ENSMUSG00000085929.2	ENSMUST00000132898.2	549	2	4	384	4	-384	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGGTCGAGGCGT	NA	False	NA	NA	False	NA	NA	NA	27430444	27432813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_27430533_27432740
ENSMUSG00000085929.2_1	chr2	+	3516	2	FSM	ENSMUSG00000085929.2	ENSMUST00000142511.2	803	2	9	-2722	6	2722	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAACCTCTCCTGTGTGC	NA	False	NA	3	True	NA	NA	NA	27430446	27436096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_27430607_27432740
ENSMUSG00000085929.2_2	chr2	+	3511	2	NNC	ENSMUSG00000085929.2	novel	803	2	NA	NA	-15	2722	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAACCTCTCCTGTGTGC	NA	False	NA	3	True	NA	NA	NA	27430422	27436096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_27430578_27432740
ENSMUSG00000085939.4_0	chr18	+	736	1	FSM	ENSMUSG00000085939.4	ENSMUST00000154992.2	717	1	-34	15	-34	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAAGTAATGTAGGGCTG	NA	False	NA	NA	False	NA	NA	NA	50267827	50268563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_50267800_50268600
ENSMUSG00000085976.2_0	chr2	+	5090	2	FSM	ENSMUSG00000085976.2	ENSMUST00000152230.2	715	2	102	-4477	102	4477	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTGTCTAATTGTCT	4649	False	NA	NA	False	NA	NA	NA	92572676	92594030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_92573022_92589285
ENSMUSG00000085984.8_0	chr14	-	1601	1	NIC	ENSMUSG00000085984.8	novel	764	3	NA	NA	6	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAGGCAAGGCCTTAC	NA	False	NA	NA	False	TTTAAA	-40	NA	66534383	66532782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_66532800_66534400
ENSMUSG00000085984.8_2	chr14	-	3223	3	FSM	ENSMUSG00000085984.8	ENSMUST00000153646.8	764	3	211	-2670	22	2670	multi-exon	FALSE	canonical	3	12	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTTGTTCTTTTAAAAC	NA	False	NA	NA	False	NA	NA	NA	66534367	66530112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_66533036_66533403_66533594_66534257
ENSMUSG00000086003.8_1	chr11	+	480	4	FSM	ENSMUSG00000086003.8	ENSMUST00000155965.2	473	4	-14	7	3	-7	multi-exon	FALSE	canonical	3	69	junction_1	38.4967531098403	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCGTATTAGTGTTTACCT	NA	False	NA	8	True	AATAAA	-15	NA	94024313	94046595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_94024382_94029312_94029490_94046281_94046324_94046402
ENSMUSG00000086003.8_3	chr11	+	343	3	ISM	ENSMUSG00000086003.8	ENSMUST00000155965.2	473	4	5054	7	2896	-7	3prime_fragment	FALSE	canonical	3	102	junction_1	30	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCGTATTAGTGTTTACCT	NA	False	NA	8	True	AATAAA	-15	NA	94029381	94046595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94029490_94046281_94046324_94046402
ENSMUSG00000086003.8_5	chr11	+	256	3	ISM	ENSMUSG00000086003.8	ENSMUST00000132584.8	695	6	17875	39	15700	-39	3prime_fragment	FALSE	canonical	3	50	junction_1	56	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACACCCACACCAATAAATA	NA	False	NA	-24	True	NA	NA	NA	94042185	94046563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_94042239_94046281_94046324_94046402
ENSMUSG00000086013.2_0	chr6	+	901	2	FSM	ENSMUSG00000086013.2	ENSMUST00000139612.2	899	2	2	-4	2	4	multi-exon	FALSE	canonical	3	46	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGGATTCTGACTTGTT	NA	False	NA	10	True	NA	NA	NA	145196256	145197579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_145196516_145196937
ENSMUSG00000086015.2_0	chr11	+	335	2	FSM	ENSMUSG00000086015.2	ENSMUST00000146868.2	1269	2	18	916	18	-916	multi-exon	TRUE	canonical	3	111	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATGGCTATTGTATAAG	1044	False	NA	7	True	AATATA	-18	NA	95749708	95750954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_95749909_95750819
ENSMUSG00000086075.2_1	chr5	+	1405	2	FSM	ENSMUSG00000086075.2	ENSMUST00000140833.2	3492	2	43	2044	-33	870	multi-exon	FALSE	canonical	3	12	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAAAGAAAGGGTTG	NA	False	NA	NA	False	NA	NA	NA	117527246	117529519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_117527351_117528218
ENSMUSG00000086147.3_19	chr4	+	3025	5	FSM	ENSMUSG00000086147.3	ENSMUST00000146688.3	2295	5	-14	-716	-14	716	multi-exon	FALSE	canonical	3	7	junction_3	133.103343308874	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147056418	147075928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_147056575_147058404_147058498_147067150_147067255_147071090_147071218_147073383
ENSMUSG00000086147.3_20	chr4	+	2922	6	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-13	716	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	126.646910740057	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147056419	147075928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_147056575_147058404_147058498_147067150_147067255_147071090_147071218_147073383_147074228_147074329
ENSMUSG00000086147.3_5	chr4	+	1171	3	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-36	38771	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	168.5	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAATGAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-28	NA	147056396	147113983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_147056575_147058404_147058498_147113083
ENSMUSG00000086147.3_6	chr4	+	2792	6	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-54	716	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	17.2788888531641	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147056378	147075928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_147056568_147065612_147065693_147067150_147067255_147071090_147071218_147073383_147074794_147075046
ENSMUSG00000086147.3_8	chr4	+	2864	7	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-21	716	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	120.012499349026	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147056411	147075928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_147056575_147058404_147058498_147067150_147067255_147071090_147071218_147073383_147074760_147074843_147074946_147075029
ENSMUSG00000086152.2_0	chr2	+	3410	3	NNC	ENSMUSG00000086152.2	novel	714	3	NA	NA	14	2391	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	1.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTTTGTCTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	162964539	162988270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_162964699_162982755_162983125_162985388
ENSMUSG00000086154.3_0	chr17	-	284	1	FSM	ENSMUSG00000086154.3	ENSMUST00000233751.2	1708	1	1242	182	1242	-182	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	29250300	29250016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29250000_29250300
ENSMUSG00000086158.3_0	chr9	-	683	2	FSM	ENSMUSG00000086158.3	ENSMUST00000124565.3	711	2	22	6	22	-6	multi-exon	FALSE	canonical	3	81	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACACTTTTTTTGTTTTT	NA	False	NA	-5	True	AATAAA	-23	NA	72892636	72887009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_72887479_72892422
ENSMUSG00000086202.2_0	chr2	+	830	3	NIC	ENSMUSG00000086202.2	novel	635	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	17	junction_1	10	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTCTTTATATCAGA	NA	False	NA	NA	False	ATTAAA	-17	NA	45586616	45588459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_45586642_45586810_45587155_45587998
ENSMUSG00000086202.2_2	chr2	+	997	2	FSM	ENSMUSG00000086202.2	ENSMUST00000134308.2	424	2	-193	-380	2	0	multi-exon	FALSE	canonical	3	37	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTCTTTATATCAGA	NA	False	NA	NA	False	ATTAAA	-17	NA	45586618	45588459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_45587155_45587998
ENSMUSG00000086219.8_1	chr5	+	447	4	FSM	ENSMUSG00000086219.8	ENSMUST00000126959.5	3360	4	4	2909	4	480	multi-exon	FALSE	canonical	3	257	junction_3	60.4281023659982	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGTTGTTGTTGTTGTTTT	NA	False	NA	10	True	NA	NA	NA	116576782	116600637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_116576898_116577427_116577496_116599782_116599863_116600453
ENSMUSG00000086219.8_11	chr5	+	568	3	FSM	ENSMUSG00000086219.8	ENSMUST00000133548.5	562	3	-11	5	-11	-5	multi-exon	FALSE	canonical	3	381	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTAAATTTCATTCCGTT	NA	False	NA	NA	False	NA	NA	NA	116576767	116600152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_116576898_116577427_116577496_116599782
ENSMUSG00000086219.8_2	chr5	+	508	4	NNC	ENSMUSG00000086219.8	novel	3360	4	NA	NA	4	480	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_3	120.252512101272	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGTTGTTGTTGTTGTTTT	NA	False	NA	10	True	NA	NA	NA	116576782	116600637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_116576898_116577427_116577496_116599782_116599924_116600453
ENSMUSG00000086219.8_9	chr5	+	2430	1	ISM	ENSMUSG00000086219.8	ENSMUST00000126959.5	3360	4	24213	125	24213	-125	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTATGCGTGCATGCAT	NA	False	NA	NA	False	NA	NA	NA	116600991	116603421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_116601000_116603400
ENSMUSG00000086228.4_0	chr9	+	1118	4	FSM	ENSMUSG00000086228.4	ENSMUST00000239433.2	846	4	-121	-151	-121	151	multi-exon	FALSE	canonical	3	844	junction_1	5.79271573232759	797	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGCCAGGTGTAGTGAC	NA	False	NA	15	True	NA	NA	NA	65279006	65285482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_65279411_65281031_65281242_65284190_65284293_65285080
ENSMUSG00000086240.5_0	chr1	-	354	1	FSM	ENSMUSG00000086240.5	ENSMUST00000145844.3	274	1	112	-192	112	192	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATAAATAAATAAA	NA	False	NA	NA	False	AATAAA	-13	NA	28619741	28619387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_28619400_28619700
ENSMUSG00000086264.10_0	chr1	-	576	2	ISM	ENSMUSG00000086264.10	ENSMUST00000165464.2	493	4	1	2245	1	-2245	5prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCAGTGAATCAAATTC	NA	False	NA	NA	False	NA	NA	NA	136058908	136057701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_136058128_136058758
ENSMUSG00000086290.10_0	chr4	+	608	5	FSM	ENSMUSG00000086290.10	ENSMUST00000153474.9	606	5	-2	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	27.427176303805	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761_132037816_132038144
ENSMUSG00000086290.10_1	chr4	+	843	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232260.2	896	4	53	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132036219_132037148_132037215_132037461_132037816_132038144
ENSMUSG00000086290.10_5	chr4	+	352	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232301.2	1538	4	1186	0	44	0	multi-exon	FALSE	canonical	3	202	junction_2	0.471404520791032	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132037172	132038335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132037215_132037461_132037527_132037761_132037816_132038144
ENSMUSG00000086290.10_6	chr4	+	311	3	FSM	ENSMUSG00000086290.10	ENSMUST00000128131.2	614	3	332	-29	-37	0	multi-exon	FALSE	canonical	3	202	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132037460	132038335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132037527_132037761_132037816_132038144
ENSMUSG00000086290.10_7	chr4	+	238	1	NIC	ENSMUSG00000086290.10	novel	896	4	NA	NA	600	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132038097	132038335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_132038100_132038300
ENSMUSG00000086290.10_8	chr4	+	213	2	FSM	ENSMUSG00000086290.10	ENSMUST00000182826.2	509	2	290	6	290	-4	multi-exon	FALSE	canonical	3	202	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTCCTCTTTTTTATT	NA	False	NA	21	True	AATAAA	-10	NA	132037787	132038329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_132037816_132038144
ENSMUSG00000086291.2_0	chr5	-	2048	1	Genic_Genomic	ENSMUSG00000086291.2	novel	NA	NA	NA	NA	-53	2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTTTTGATTATTCTTC	NA	False	NA	NA	False	AATAAA	-19	NA	34371199	34369151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_-_34369200_34371200
ENSMUSG00000086291.2_1	chr5	-	2652	2	NNC	ENSMUSG00000086291.2	novel	1569	2	NA	NA	-805	-2	intron_retention	FALSE	canonical	3	18	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAATAGTTTTGATTATT	NA	False	NA	NA	False	AATAAA	-15	NA	34371951	34369155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_34371410_34371553
ENSMUSG00000086316.9_0	chrX	+	761	4	FSM	ENSMUSG00000086316.9	ENSMUST00000140575.8	788	4	27	0	7	0	multi-exon	FALSE	canonical	3	149	junction_3	8.37987005998436	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATGTCCAAATAAATTT	NA	False	NA	9	True	ATTAAA	-14	NA	152506612	152524260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_152506934_152508700_152508838_152511857_152511936_152524035
ENSMUSG00000086316.9_1	chrX	+	1389	3	FSM	ENSMUSG00000086316.9	ENSMUST00000149514.8	775	3	-5	-609	-5	609	multi-exon	FALSE	canonical	3	163	junction_1	3	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGATAAACTGTCTAAATT	NA	False	NA	NA	False	AATAAA	-17	NA	152506617	152512793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_152506934_152508700_152508838_152511857
ENSMUSG00000086316.9_2	chrX	+	3785	3	NIC	ENSMUSG00000086316.9	novel	788	4	NA	NA	-4	10	intron_retention	FALSE	canonical	3	149	junction_2	7	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAATTTTGTCTTATGG	NA	False	NA	19	True	ATTAAA	-24	NA	152506618	152524270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_152506934_152508700_152511936_152524035
ENSMUSG00000086316.9_3	chrX	+	708	3	FSM	ENSMUSG00000086316.9	ENSMUST00000185492.7	1346	3	11	627	-6	29	multi-exon	FALSE	canonical	3	65	junction_2	49	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTGTTAGAGCTATACGA	NA	False	NA	38	True	AATAAA	-13	NA	152506616	152524289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_152506934_152508700_152508838_152524035
ENSMUSG00000086316.9_6	chrX	+	305	2	ISM	ENSMUSG00000086316.9	ENSMUST00000208235.2	132	3	3027	-180	3027	0	3prime_fragment	FALSE	canonical	3	149	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATGTCCAAATAAATTT	NA	False	NA	9	True	ATTAAA	-14	NA	152511855	152524260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_152511936_152524035
ENSMUSG00000086328.2_0	chr2	-	169	1	Genic_Genomic	ENSMUSG00000086328.2	novel	NA	NA	NA	NA	1081	23	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCCCTGTGGCTTTCTG	NA	False	NA	NA	False	AATAAA	-43	NA	115896844	115896675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_115896700_115896800
ENSMUSG00000086370.10_2	chrX	-	2528	12	NIC	ENSMUSG00000086370.10	novel	2478	12	NA	NA	-37	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	1.08330684434663	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATAACATTTTGATGGT	NA	False	NA	NA	False	AATAAA	-25	NA	102660506	102613181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_102614482_102616105_102616168_102639536_102639614_102646647_102646696_102649063_102649226_102649923_102649989_102650529_102650633_102651142_102651399_102652909_102653023_102656628_102656802_102658670_102658799_102660465
ENSMUSG00000086370.10_4	chrX	-	302	1	Genic_Genomic	ENSMUSG00000086370.10	novel	NA	NA	NA	NA	20338	88	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGCTTTTTATGCCTC	NA	False	NA	NA	False	NA	NA	NA	102631513	102631211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_102631200_102631500
ENSMUSG00000086390.8_1	chr8	+	1654	1	Genic_Genomic	ENSMUSG00000086390.8	novel	NA	NA	NA	NA	0	193	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGTCTTTGGTATTTTG	NA	False	NA	NA	False	ATTAAA	-15	NA	106863696	106865350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_106863700_106865400
ENSMUSG00000086391.2_0	chr11	+	1049	3	NNC	ENSMUSG00000086391.2	novel	1075	4	NA	NA	14017	-5	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	3	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGCCTTGTAAATATTT	2736	False	NA	NA	False	NA	NA	NA	11832139	11835316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_11832389_11832956_11833080_11834639
ENSMUSG00000086429.10_1	chr6	-	1095	2	FSM	ENSMUSG00000086429.10	ENSMUST00000159544.3	822	2	98	-371	-25	-5	multi-exon	FALSE	canonical	3	30	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACTGTGGAATGACTTT	NA	False	NA	-5	True	NA	NA	NA	113054196	113047363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113048397_113054134
ENSMUSG00000086429.10_2	chr6	-	1155	2	FSM	ENSMUSG00000086429.10	ENSMUST00000124246.4	1181	2	23	3	4	-3	multi-exon	FALSE	canonical	2	7	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTGGAATGACTTTTT	NA	False	NA	-3	True	NA	NA	NA	113054148	113047361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_113048397_113054028
ENSMUSG00000086429.10_3	chr6	-	1034	1	NIC	ENSMUSG00000086429.10	novel	551	3	NA	NA	5739	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAAACTGTGGAATGACT	NA	False	NA	-7	True	NA	NA	NA	113048399	113047365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_113047400_113048400
ENSMUSG00000086454.8_0	chr2	+	1612	3	FSM	ENSMUSG00000086454.8	ENSMUST00000146553.8	770	3	19	-861	-2	85	multi-exon	FALSE	canonical	3	184	junction_1	196.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAGCTAGAAGT	NA	False	NA	-3	True	NA	NA	NA	104389526	104399262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_104389830_104390068_104390321_104398205
ENSMUSG00000086454.8_1	chr2	+	1439	4	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-2	72	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_1	171.663106759205	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAAGAAAGAA	NA	False	NA	-16	True	NA	NA	NA	104389526	104399249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_104389830_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_14	chr2	+	1161	4	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-2	72	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	198.704694347052	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAAGAAAGAA	NA	False	NA	-16	True	NA	NA	NA	104389526	104399249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_104389552_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_16	chr2	+	1326	3	FSM	ENSMUSG00000086454.8	ENSMUST00000127350.2	536	3	-10	-780	-2	77	multi-exon	FALSE	canonical	3	101	junction_1	238	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAGAAAGAAAGAAG	NA	False	NA	-11	True	NA	NA	NA	104389526	104399254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_104389552_104390068_104390321_104398205
ENSMUSG00000086454.8_2	chr2	+	1692	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-2	86	intron_retention	FALSE	canonical	3	251	junction_2	163	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAGAAGCTAGAAGTT	NA	False	NA	-2	True	NA	NA	NA	104389526	104399263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_20	chr2	+	1525	3	FSM	ENSMUSG00000086454.8	ENSMUST00000136364.8	677	3	3	-851	-2	72	multi-exon	FALSE	canonical	3	45	junction_1	266	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAAGAAAGAA	NA	False	NA	-16	True	NA	NA	NA	104389526	104399249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_104389756_104390068_104390321_104398205
ENSMUSG00000086454.8_4	chr2	+	1838	2	FSM	ENSMUSG00000086454.8	ENSMUST00000127237.2	707	2	-277	-854	-2	72	multi-exon	FALSE	canonical	3	577	junction_1	0	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAAGAAAGAA	NA	False	NA	-16	True	NA	NA	NA	104389526	104399249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_104390321_104398205
ENSMUSG00000086468.2_0	chr11	+	311	2	FSM	ENSMUSG00000086468.2	ENSMUST00000148496.2	388	2	-14	91	-14	-91	multi-exon	FALSE	canonical	3	24	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAATATGATTTGCGAT	NA	False	NA	NA	False	AATAAA	-17	NA	17903989	17905007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_17904086_17904792
ENSMUSG00000086477.4_1	chr7	-	994	3	ISM	ENSMUSG00000086477.4	ENSMUST00000148776.2	1133	4	7	10234	7	6655	5prime_fragment	FALSE	canonical	3	5	junction_2	7.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGGACTGGACTGGGTAT	9371	False	NA	NA	False	NA	NA	NA	98352128	98341776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_98342478_98342554_98342809_98352089
ENSMUSG00000086502.2_0	chr7	+	2807	2	FSM	ENSMUSG00000086502.2	ENSMUST00000144796.2	1778	2	22	-1051	22	1051	multi-exon	FALSE	canonical	3	8	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	925	False	NA	NA	False	NA	NA	NA	127047833	127060583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127048744_127058686
ENSMUSG00000086515.2_0	chr2	-	924	2	FSM	ENSMUSG00000086515.2	ENSMUST00000150702.2	608	2	-96	-220	-96	220	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTTTTGCTTTCGTGTG	NA	False	NA	NA	False	NA	NA	NA	70339639	70333556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_70334300_70339458
ENSMUSG00000086563.2_0	chr2	-	4781	2	NIC	ENSMUSG00000086563.2	novel	768	3	NA	NA	-31	2812	intron_retention	FALSE	canonical	3	31	junction_1	0	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150548827	150543643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_150548201_150548603
ENSMUSG00000086583.4_0	chr7	-	1017	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	0	2	0	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1419	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	114305470	114304453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_114304500_114305500
ENSMUSG00000086587.8_0	chr4	+	884	6	FSM	ENSMUSG00000086587.8	ENSMUST00000136992.8	876	6	-12	4	-12	-4	multi-exon	FALSE	canonical	3	31	junction_5	12.687001221723	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTATATATGGTACAGAAT	-12	True	NA	2	True	TATAAA	-13	NA	14930648	14953026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_14930771_14936440_14936540_14938483_14938558_14942199_14942276_14947438_14947546_14952620
ENSMUSG00000086587.8_1	chr4	+	869	5	NIC	ENSMUSG00000086587.8	novel	876	6	NA	NA	-101	-1	combination_of_known_splicesites	FALSE	canonical	3	17	junction_4	17.4928556845359	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATGGTACAGAATTTT	694	False	NA	5	True	TATAAA	-16	NA	14930559	14953029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_14930771_14936440_14936540_14938483_14938558_14942199_14942276_14952620
ENSMUSG00000086591.2_0	chr11	+	888	2	NNC	ENSMUSG00000086591.2	novel	859	2	NA	NA	3831	5	intron_retention	FALSE	canonical	3	26	junction_1	0	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGAAAACGATGTCTAGA	2404	False	NA	NA	False	AATAAA	-23	NA	69343204	69344507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_69343301_69343715
ENSMUSG00000086596.3_0	chr9	+	3800	5	FSM	ENSMUSG00000086596.3	ENSMUST00000135338.3	4083	5	277	6	277	-6	multi-exon	FALSE	canonical	1	1	junction_3	1.08972473588517	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACTTGATAAATGTATTG	NA	False	NA	NA	False	AATAAA	-13	NA	113886484	113927790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_113886713_113893023_113893202_113897824_113897944_113911488_113911678_113924704
ENSMUSG00000086596.3_1	chr9	+	3678	4	NIC	ENSMUSG00000086596.3	novel	4083	5	NA	NA	209	-7	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACTTGATAAATGTATT	NA	False	NA	NA	False	AATAAA	-12	NA	113886416	113927789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_113886713_113893023_113893202_113897824_113897944_113924704
ENSMUSG00000086596.3_5	chr9	+	3213	1	NIC	ENSMUSG00000086596.3	novel	4083	5	NA	NA	38369	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACTTGATAAATGTATT	5217	False	NA	NA	False	AATAAA	-12	NA	113924576	113927789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_113924600_113927800
ENSMUSG00000086598.10_0	chr2	+	3404	4	NIC	ENSMUSG00000086598.10	novel	3052	5	NA	NA	-5	-8	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	3.2659863237109	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACAGATTTGCTTTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	84489417	84499116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_84489938_84490440_84490526_84491774_84491945_84496487
ENSMUSG00000086598.10_1	chr2	+	3221	3	NIC	ENSMUSG00000086598.10	novel	3052	5	NA	NA	-2	-18	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTGCTTTTAAAAAACAGA	NA	False	NA	NA	False	ATTAAA	-4	NA	84489420	84499106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_84489938_84490440_84490526_84496487
ENSMUSG00000086598.10_4	chr2	+	4713	3	NIC	ENSMUSG00000086598.10	novel	3052	5	NA	NA	-65	-8	intron_retention	FALSE	canonical	3	14	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACAGATTTGCTTTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	84489357	84499116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_84489938_84490440_84491945_84496487
ENSMUSG00000086598.10_5	chr2	+	3509	5	FSM	ENSMUSG00000086598.10	ENSMUST00000133437.3	3052	5	-465	8	2	-8	multi-exon	FALSE	canonical	0	0	junction_3	7.11951543294907	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACAGATTTGCTTTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	84489424	84499116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_84489938_84490440_84490526_84491391_84491504_84491774_84491945_84496487
ENSMUSG00000086617.2_0	chr11	+	801	5	NNC	ENSMUSG00000086617.2	novel	472	3	NA	NA	7	680	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	9.83298021964857	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTAATGCCTGTGGGGTT	NA	False	NA	5	True	AAAACA	-25	NA	101501446	101507462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_101501538_101501917_101502004_101506606_101506824_101507017_101507086_101507123
ENSMUSG00000086629.9_1	chrX	+	564	3	FSM	ENSMUSG00000086629.9	ENSMUST00000131640.8	546	3	-12	-6	-12	-1	multi-exon	FALSE	canonical	3	8	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCAATCTCTATTTTCAA	NA	False	NA	NA	False	AATAAA	-18	NA	107878250	107930295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_107878380_107879871_107879962_107929950
ENSMUSG00000086629.9_6	chrX	+	173	1	ISM	ENSMUSG00000086629.9	ENSMUST00000124329.2	1660	3	71140	208	71140	-208	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAGAGCTGATGA	NA	False	NA	NA	False	NA	NA	NA	108018131	108018304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_108018100_108018300
ENSMUSG00000086649.2_0	chr13	+	618	4	FSM	ENSMUSG00000086649.2	ENSMUST00000156236.2	621	4	14	-11	14	11	multi-exon	FALSE	canonical	3	14	junction_3	8.73053390247253	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACTTGTGTACAGATT	875	False	NA	8	True	NA	NA	NA	111716808	111781375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_111716936_111717450_111717511_111778756_111779023_111781210
ENSMUSG00000086649.2_4	chr13	+	1263	3	ISM	ENSMUSG00000086649.2	ENSMUST00000156236.2	621	4	26	1520	26	475	5prime_fragment	FALSE	canonical	3	32	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAAGTGTATGAGTTTT	887	False	NA	NA	False	NA	NA	NA	111716820	111779844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_111716936_111717450_111717511_111778756
ENSMUSG00000086655.2_0	chr5	+	1092	2	FSM	ENSMUSG00000086655.2	ENSMUST00000127792.2	1599	2	1	506	1	-506	multi-exon	FALSE	canonical	3	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCTCTTTTAAGACTTA	NA	False	NA	NA	False	NA	NA	NA	116261673	116266663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_116261887_116265784
ENSMUSG00000086657.3_0	chr2	-	720	2	FSM	ENSMUSG00000086657.3	ENSMUST00000152524.2	801	2	82	-1	-4	1	multi-exon	FALSE	canonical	3	11	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATGGCATATTATAATT	NA	False	NA	NA	False	AATAAA	-17	NA	14078663	14075141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_14075592_14078393
ENSMUSG00000086685.2_1	chrX	+	1524	8	NIC	ENSMUSG00000086685.2	novel	636	6	NA	NA	4	2518	combination_of_known_splicesites	FALSE	canonical	3	6	junction_4	10.2399776785471	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTGGGATGACTTTGG	NA	False	NA	NA	False	ATTAAA	-17	NA	134420343	134452583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134420483_134421903_134421994_134423420_134423510_134425261_134425360_134428618_134428718_134449948_134450249_134450691_134451274_134452456
ENSMUSG00000086685.2_2	chrX	+	671	6	FSM	ENSMUSG00000086685.2	ENSMUST00000135491.2	636	6	26	-61	26	61	multi-exon	FALSE	canonical	3	6	junction_4	12.0266371026983	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGGCCCTTTTACTG	NA	False	NA	NA	False	AATACA	-16	NA	134420365	134450126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134420483_134421903_134421994_134423420_134423510_134425261_134425360_134428618_134428718_134449948
ENSMUSG00000086725.2_0	chr11	-	1870	1	Genic_Genomic	ENSMUSG00000086725.2	novel	NA	NA	NA	NA	879	99	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTATTGCGTGTGTTTT	NA	False	NA	NA	False	AATACA	-24	NA	29122679	29120809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_29120800_29122700
ENSMUSG00000086730.3_1	chr1	+	3644	2	FSM	ENSMUSG00000086730.3	ENSMUST00000141027.2	462	2	313	-3495	-82	3142	multi-exon	FALSE	canonical	3	28	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63239784	63250268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_63239834_63246673
ENSMUSG00000086748.2_2	chr2	-	695	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8808	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	256.084336693988	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGTGTTCATTCTGT	NA	False	NA	-13	True	AATAAA	-14	NA	10370044	10344093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10351924_10352011_10369968
ENSMUSG00000086748.2_3	chr2	-	609	4	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8808	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	241.59608164593	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGTGTTCATTCTGT	NA	False	NA	-13	True	AATAAA	-14	NA	10370044	10344093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10369968
ENSMUSG00000086748.2_6	chr2	-	612	4	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8808	-1	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_3	186.111674957687	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTTTGTGTTCATTCTG	NA	False	NA	-14	True	AATAAA	-13	NA	10370044	10344094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10369964
ENSMUSG00000086748.2_8	chr2	-	3479	3	ISM	ENSMUSG00000086748.2	ENSMUST00000137351.2	1020	4	25709	1	25709	-1	3prime_fragment	FALSE	canonical	3	493	junction_1	18.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTTTGTGTTCATTCTG	NA	False	NA	-14	True	AATAAA	-13	NA	10353143	10344094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_10344284_10346331_10346540_10350061
ENSMUSG00000086788.3_1	chr4	+	2790	2	FSM	ENSMUSG00000086788.3	ENSMUST00000134416.2	1002	2	-75	-1713	44	0	multi-exon	FALSE	canonical	2	7	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGTGCAATCATTAAGA	NA	False	NA	NA	False	NA	NA	NA	135354009	135357509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_135354357_135355066
ENSMUSG00000086798.2_0	chr10	+	174	1	ISM	ENSMUSG00000086798.2	ENSMUST00000124320.2	1298	3	1601	111	1601	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCCAGAGCGAGCAGAGGT	NA	False	NA	NA	False	NA	NA	NA	75916051	75916225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_75916100_75916200
ENSMUSG00000086807.9_3	chrX	-	1571	4	FSM	ENSMUSG00000086807.9	ENSMUST00000126591.2	712	4	13	-872	13	872	multi-exon	FALSE	non_canonical	0	0	junction_1	6.59966329107444	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAAAGAATGTCTACTG	NA	False	NA	NA	False	NA	NA	NA	138258474	138247367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_138248639_138255751_138255851_138257038_138257123_138258357
ENSMUSG00000086810.2_0	chr4	-	3725	2	FSM	ENSMUSG00000086810.2	ENSMUST00000138077.2	3414	2	-311	0	-311	0	multi-exon	FALSE	canonical	3	15	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACTCAAATGC	NA	False	NA	-22	True	NA	NA	NA	154740086	154730210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_154733095_154739245
ENSMUSG00000086810.2_1	chr4	-	2415	1	ISM	ENSMUSG00000086810.2	ENSMUST00000138077.2	3414	2	7150	0	7150	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACTCAAATGC	NA	False	NA	-22	True	NA	NA	NA	154732625	154730210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_154730200_154732600
ENSMUSG00000086825.2_0	chr1	-	4106	3	FSM	ENSMUSG00000086825.2	ENSMUST00000130486.2	3681	3	-423	-2	-423	2	multi-exon	FALSE	canonical	3	4	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCCTTGTGTCCCTATTT	NA	False	NA	NA	False	NA	NA	NA	130365351	130357515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_130359963_130363408_130363558_130363841
ENSMUSG00000086841.2_0	chr11	+	461	5	FSM	ENSMUSG00000086841.2	ENSMUST00000131787.2	462	5	0	1	0	-1	multi-exon	FALSE	canonical	3	3662	junction_1	404.852056311932	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGCCAGTGTTTTGGAT	NA	False	NA	NA	False	AATAAA	-17	NA	62493702	62495632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62493850_62494060_62494109_62494422_62494473_62495228_62495293_62495480
ENSMUSG00000086841.2_14	chr11	+	312	4	ISM	ENSMUSG00000086841.2	ENSMUST00000131787.2	462	5	360	1	360	-1	3prime_fragment	FALSE	canonical	3	3941	junction_3	324.165938302524	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGCCAGTGTTTTGGAT	NA	False	NA	NA	False	AATAAA	-17	NA	62494062	62495632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_62494109_62494422_62494473_62495228_62495293_62495480
ENSMUSG00000086841.2_2	chr11	+	188	2	ISM	ENSMUSG00000086841.2	ENSMUST00000131787.2	462	5	1554	1	1554	-1	3prime_fragment	FALSE	canonical	3	3941	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGCCAGTGTTTTGGAT	NA	False	NA	NA	False	AATAAA	-17	NA	62495256	62495632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_62495293_62495480
ENSMUSG00000086849.2_0	chr5	+	329	2	NIC	ENSMUSG00000029528.20	novel	3761	10	NA	NA	-7	-28946	combination_of_known_splicesites	FALSE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTAAAATTACACTTGT	NA	False	NA	NA	False	AATGAA	-15	NA	115644762	115653996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_115644928_115653832
ENSMUSG00000086859.5_0	chr11	+	579	2	FSM	ENSMUSG00000086859.5	ENSMUST00000149822.3	600	2	20	1	1	0	multi-exon	FALSE	canonical	3	615	junction_1	0	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTTTCCATTGTTCAA	895	False	NA	19	True	AATAAA	-15	NA	116967628	116969780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116968029_116969601
ENSMUSG00000086859.5_1	chr11	+	2139	1	FSM	ENSMUSG00000086859.5	ENSMUST00000182811.2	2153	1	14	0	14	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTTTCCATTGTTCAA	908	False	NA	19	True	AATAAA	-15	NA	116967641	116969780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116967600_116969800
ENSMUSG00000086877.8_11	chrX	+	1033	5	NNC	ENSMUSG00000086877.8	novel	1412	4	NA	NA	3	608	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_3	26.8048503073604	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTTGCCATGGTCATTG	NA	False	NA	3	True	NA	NA	NA	20828355	20853584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_20828835_20833967_20834048_20851664_20851705_20852228_20852400_20853321
ENSMUSG00000086877.8_12	chrX	+	1968	4	NNC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	1	608	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_3	34.9221356098901	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTTGCCATGGTCATTG	NA	False	NA	3	True	NA	NA	NA	20828353	20853584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_20828835_20833967_20834048_20851664_20851705_20852217
ENSMUSG00000086877.8_19	chrX	+	2481	3	NNC	ENSMUSG00000086877.8	novel	1412	4	NA	NA	1	608	intron_retention	FALSE	canonical	3	138	junction_1	14	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTTGCCATGGTCATTG	NA	False	NA	3	True	NA	NA	NA	20828353	20853584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_20828835_20833967_20834048_20851664
ENSMUSG00000086877.8_5	chrX	+	2543	3	ISM	ENSMUSG00000086877.8	ENSMUST00000136447.2	1412	4	1	-608	1	608	intron_retention	FALSE	canonical	3	27	junction_1	69.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTTGCCATGGTCATTG	NA	False	NA	3	True	NA	NA	NA	20828353	20853584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_20828897_20833967_20834048_20851664
ENSMUSG00000086877.8_7	chrX	+	1047	5	NNC	ENSMUSG00000086877.8	novel	1412	4	NA	NA	0	608	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_3	30.3016088681773	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTTGCCATGGTCATTG	NA	False	NA	3	True	NA	NA	NA	20828352	20853584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_20828835_20833967_20834048_20851664_20851705_20852217_20852400_20853321
ENSMUSG00000086904.2_0	chr2	+	4368	1	Genic_Genomic	ENSMUSG00000086904.2	novel	NA	NA	NA	NA	-2289	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTCCAGTTTTTTGTTTC	NA	False	NA	NA	False	GATAAA	-14	NA	33865968	33870336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_33866000_33870300
ENSMUSG00000086922.3_0	chr6	-	733	1	FSM	ENSMUSG00000086922.3	ENSMUST00000118459.2	685	1	58	-106	58	106	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACATTGAAAAAAAAAAAA	7176	False	NA	NA	False	ATTAAA	-12	NA	31119540	31118807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_31118800_31119500
ENSMUSG00000086924.2_0	chr11	+	3597	1	Genic_Genomic	ENSMUSG00000086924.2	novel	NA	NA	NA	NA	-28	5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGTTTTACAATGTAAAG	NA	False	NA	NA	False	ATTAAA	-17	NA	119829308	119832905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_119829300_119832900
ENSMUSG00000086930.2_1	chr17	-	2204	1	Genic_Genomic	ENSMUSG00000086930.2	novel	NA	NA	NA	NA	-181	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAACAGTGGAAAGGGTTG	NA	False	NA	-11	True	AATAAA	-15	NA	48013102	48010898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_48010900_48013100
ENSMUSG00000086965.2_1	chr16	+	2608	3	FSM	ENSMUSG00000086965.2	ENSMUST00000146673.2	865	3	-13	-1730	-13	1730	multi-exon	FALSE	canonical	3	20	junction_2	96	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGTTACTGCATACTTTG	NA	False	NA	114	True	TTTAAA	-17	NA	18317637	18322138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18317702_18317795_18317891_18319689
ENSMUSG00000086993.2_0	chr7	-	4306	2	FSM	ENSMUSG00000086993.2	ENSMUST00000147690.2	3091	2	21	-1236	21	1236	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACATGTTCTGATTAGGT	NA	False	NA	NA	False	AATAAA	-30	NA	97345807	97341393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_97345675_97345782
ENSMUSG00000087006.4_0	chr2	-	1286	1	FSM	ENSMUSG00000087006.4	ENSMUST00000148314.3	1240	1	-50	4	-50	2	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCACTTCTCCGGGCTTTGG	NA	False	NA	-7	True	AATAAA	-19	NA	93787444	93786158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_93786200_93787400
ENSMUSG00000087060.8_1	chr11	-	1005	4	FSM	ENSMUSG00000087060.8	ENSMUST00000123734.8	787	4	-55	-163	2	0	multi-exon	FALSE	canonical	3	11	junction_1	8.25967446224258	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGAAGGTGTATCGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	16901097	16885158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_16885927_16886454_16886565_16900881_16900931_16901019
ENSMUSG00000087060.8_3	chr11	-	1550	3	NIC	ENSMUSG00000087060.8	novel	941	4	NA	NA	2	0	intron_retention	FALSE	canonical	3	3	junction_2	12.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGAAGGTGTATCGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	16901097	16885158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_16886565_16900881_16900931_16901002
ENSMUSG00000087060.8_6	chr11	-	568	5	FSM	ENSMUSG00000087060.8	ENSMUST00000136053.8	747	5	187	-8	-2	8	multi-exon	TRUE	canonical	3	6	junction_3	9.35414346693485	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATATTTTGTCTTTGGT	NA	False	NA	NA	False	CATAAA	-36	NA	16901095	16885620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_16885842_16886454_16886565_16887372_16887485_16900881_16900931_16901019
ENSMUSG00000087060.8_8	chr11	-	1537	3	FSM	ENSMUSG00000087060.8	ENSMUST00000130392.8	1540	3	-2	5	-1	0	multi-exon	FALSE	canonical	3	28	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGAAGGTGTATCGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	16901101	16885158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_16886565_16900881_16900931_16901019
ENSMUSG00000087060.8_9	chr11	-	1174	1	ISM	ENSMUSG00000087060.8	ENSMUST00000130392.8	1540	3	14769	3	14712	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAGGTGTATCGTTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	16886330	16885156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_16885200_16886300
ENSMUSG00000087084.2_0	chr4	+	653	2	ISM	ENSMUSG00000087084.2	ENSMUST00000126252.2	1720	3	-168	3090	-168	-3090	5prime_fragment	FALSE	canonical	3	28	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTCCTTTTTTTGGCTGG	NA	False	NA	NA	False	NA	NA	NA	140107772	140109795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_140108031_140109400
ENSMUSG00000087084.2_2	chr4	+	1779	2	NIC	ENSMUSG00000087084.2	novel	1720	3	NA	NA	-162	25	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAAGACGCATCTAAGTC	NA	False	NA	NA	False	AAAAAG	-14	NA	140107778	140112910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_140108031_140111383
ENSMUSG00000087088.3_0	chr7	-	175	1	ISM	ENSMUSG00000087088.3	ENSMUST00000208892.2	8508	2	12298	926	12260	-926	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAATGGGATGTAT	NA	False	NA	NA	False	NA	NA	NA	83268790	83268615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_83268600_83268800
ENSMUSG00000087107.9_0	chr11	+	1945	3	NIC	ENSMUSG00000087107.9	novel	1428	4	NA	NA	18	-23	intron_retention	FALSE	canonical	0	0	junction_1	7.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGCCTTGCTCCTACC	NA	False	NA	NA	False	NA	NA	NA	83114419	83117407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_83115137_83115277_83115458_83116359
ENSMUSG00000087107.9_1	chr11	+	1203	2	ISM	ENSMUSG00000087107.9	ENSMUST00000143673.2	1428	4	898	26	325	-26	3prime_fragment	FALSE	canonical	3	15	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTGGAGCCTTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	83115299	83117404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_83115458_83116359
ENSMUSG00000087128.8_0	chr4	-	1751	6	NNC	ENSMUSG00000087128.8	novel	925	5	NA	NA	-10	647	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	4.63033476111609	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGAATTTATGTGCAAGC	NA	False	NA	NA	False	NA	NA	NA	94365427	94348520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_94349593_94350122_94350292_94352666_94352793_94353653_94353778_94356020_94356103_94365249
ENSMUSG00000087132.9_1	chr19	+	2432	2	FSM	ENSMUSG00000087132.9	ENSMUST00000136632.2	1422	2	-1017	7	-1017	-1	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAGATTTTATTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	4495823	4498353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4497455_4497552
ENSMUSG00000087132.9_2	chr19	+	944	5	FSM	ENSMUSG00000087132.9	ENSMUST00000133871.8	984	5	-56	96	-56	-96	multi-exon	FALSE	canonical	0	0	junction_2	1.29903810567666	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCTGTCCCTCGACAT	NA	False	NA	NA	False	AAAAAG	-35	NA	4489530	4498115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4489699_4493769_4493817_4494030_4494067_4497324_4497455_4497552
ENSMUSG00000087135.8_3	chr9	-	3155	3	Fusion	ENSMUSG00000111189.2_ENSMUSG00000087135.8	novel	432	2	NA	NA	-35	2419	multi-exon	FALSE	canonical	0	0	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAATCTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40694792	40670129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr9_-_40672956_40694218_40694287_40694531
ENSMUSG00000087135.8_4	chr9	-	784	3	ISM	ENSMUSG00000087135.8	ENSMUST00000149386.8	819	4	679	5	-41	1	3prime_fragment	FALSE	canonical	3	11	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTGTGTGTGACTGCCG	NA	False	NA	NA	False	AATAAA	-24	NA	40694798	40692042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_40692492_40694218_40694287_40694531
ENSMUSG00000087141.2_0	chr16	-	2165	1	ISM	ENSMUSG00000087141.2	ENSMUST00000130481.2	7140	4	48789	2	48789	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATAGCCGTGTTTCCTTGGT	2705	False	NA	NA	False	AATAAA	-12	NA	45781792	45779627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_45779600_45781800
ENSMUSG00000087141.2_1	chr16	-	7324	4	FSM	ENSMUSG00000087141.2	ENSMUST00000130481.2	7140	4	-186	2	-186	-2	multi-exon	FALSE	canonical	1	2	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATAGCCGTGTTTCCTTGGT	NA	False	NA	NA	False	AATAAA	-12	NA	45830767	45779627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_45785538_45792471_45792714_45800598_45801060_45830056
ENSMUSG00000087151.2_0	chr2	-	3448	2	FSM	ENSMUSG00000087151.2	ENSMUST00000143857.2	691	2	-222	-2535	-222	2535	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCTGTGTCCAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	128907828	128900330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_128903007_128907056
ENSMUSG00000087153.9_10	chr8	+	1893	4	NNC	ENSMUSG00000087153.9	novel	862	5	NA	NA	-179	9557	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9.89949493661167	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAAAGCAAG	2718	False	NA	NA	False	NA	NA	NA	19732285	19757309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_19732505_19737619_19737813_19755608_19756785_19757004
ENSMUSG00000087153.9_4	chr8	+	4107	5	NNC	ENSMUSG00000087153.9	novel	862	5	NA	NA	-179	-849	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	213.197531646124	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAAATATAAATAGGTGTG	2718	False	NA	NA	False	AATAAA	-10	NA	19732285	19746903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_19732672_19737619_19737921_19741536_19741657_19743566_19745450_19745486
ENSMUSG00000087153.9_5	chr8	+	3937	5	NNC	ENSMUSG00000087153.9	novel	862	5	NA	NA	-179	-852	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	212.217311970536	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATAAATATAAATAGGT	2718	False	NA	NA	False	AATAAA	-7	NA	19732285	19746900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_19732505_19737619_19737921_19741536_19741657_19743566_19745450_19745486
ENSMUSG00000087153.9_6	chr8	+	2128	3	NNC	ENSMUSG00000087153.9	novel	862	5	NA	NA	-179	9572	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7.5	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCTCTGCCTGCTCTTT	2718	False	NA	NA	False	NA	NA	NA	19732285	19757324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_19732505_19737619_19737813_19755608
ENSMUSG00000087165.8_0	chr11	-	634	3	FSM	ENSMUSG00000087165.8	ENSMUST00000140069.2	502	3	-23	-109	-4	2	multi-exon	FALSE	canonical	3	13	junction_2	6.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTGTCTCAGTGATTAG	NA	False	NA	-1	True	NA	NA	NA	57692247	57686322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_57686621_57686851_57687000_57692059
ENSMUSG00000087165.8_1	chr11	-	762	4	FSM	ENSMUSG00000087165.8	ENSMUST00000152790.8	714	4	-48	0	-48	0	multi-exon	FALSE	canonical	3	14	junction_3	7.84573486395988	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTTGTCTCAGTGATT	NA	False	NA	-3	True	NA	NA	NA	57692291	57686324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_57686621_57686851_57687000_57687137_57687224_57692059
ENSMUSG00000087166.10_0	chr4	+	3091	4	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	46	3	1	-3	intron_retention	FALSE	canonical	3	363	junction_2	40.8765077873452	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGGTTTACTTAATGTC	NA	False	NA	29	True	NA	NA	NA	98615030	98626714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682
ENSMUSG00000087166.10_1	chr4	+	3111	4	NIC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	1	-3	intron_retention	FALSE	canonical	3	192	junction_2	120.477752671972	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGGTTTACTTAATGTC	NA	False	NA	29	True	NA	NA	NA	98615030	98626714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_98615078_98615631_98615708_98621359_98622316_98624682
ENSMUSG00000087166.10_28	chr4	+	2586	2	FSM	ENSMUSG00000087166.10	ENSMUST00000173659.2	2547	2	322	-361	322	-3	multi-exon	FALSE	canonical	3	460	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGGTTTACTTAATGTC	NA	False	NA	29	True	NA	NA	NA	98621761	98626714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_98622316_98624682
ENSMUSG00000087166.10_31	chr4	+	1654	1	NIC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	3621	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGGTTTACTTAATGTC	NA	False	NA	29	True	NA	NA	NA	98625060	98626714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_98625100_98626700
ENSMUSG00000087174.8_10	chrX	-	7500	4	NIC	ENSMUSG00000087174.8	novel	3732	5	NA	NA	7	180	intron_retention	FALSE	canonical	3	29	junction_1	44.1588043316392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTATTAGTTCTTTGAGT	NA	False	NA	NA	False	AATAAA	-19	NA	104113686	104082233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_104087718_104110364_104112235_104113216_104113282_104113605
ENSMUSG00000087174.8_11	chrX	-	851	6	FSM	ENSMUSG00000087174.8	ENSMUST00000140954.8	3287	6	30	2406	0	-4	multi-exon	FALSE	canonical	3	59	junction_2	25.9183332797462	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGTTGTGGATTTACA	NA	False	NA	-7	True	AATAAA	-13	NA	104113700	104087412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113605
ENSMUSG00000087174.8_12	chrX	-	632	5	NIC	ENSMUSG00000087174.8	novel	709	6	NA	NA	3	-4	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	44.3790491110389	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGTTGTGGATTTACA	NA	False	NA	-7	True	AATAAA	-13	NA	104113690	104087412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_104087718_104110364_104110484_104112176_104112235_104113216_104113282_104113605
ENSMUSG00000087174.8_2	chrX	-	741	5	FSM	ENSMUSG00000087174.8	ENSMUST00000138460.8	3732	5	43	2948	6	1	multi-exon	FALSE	canonical	3	29	junction_1	38.5940409908058	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGTGGATTTACATGTAG	NA	False	NA	-2	True	AATAAA	-18	NA	104113687	104087407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_104087718_104110364_104110484_104112069_104112235_104113216_104113282_104113605
ENSMUSG00000087174.8_20	chrX	-	770	5	NIC	ENSMUSG00000087174.8	novel	3287	6	NA	NA	7	-6	combination_of_known_splicesites	FALSE	canonical	2	13	junction_4	26.7803566070357	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAACAGTTGTGGATTTA	NA	False	NA	-9	True	AATAAA	-11	NA	104113686	104087414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113605
ENSMUSG00000087174.8_3	chrX	-	2703	1	NIC	ENSMUSG00000087174.8	novel	3164	6	NA	NA	28699	174	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATTTTATTAGTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	104084942	104082239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_104082200_104084900
ENSMUSG00000087174.8_6	chrX	-	2026	8	NIC	ENSMUSG00000087174.8	novel	1887	8	NA	NA	-2	174	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	41.0867673220904	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATTTTATTAGTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	104113716	104082239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_104083419_104086735_104086911_104087607_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113605
ENSMUSG00000087174.8_7	chrX	-	751	6	FSM	ENSMUSG00000087174.8	ENSMUST00000144366.8	709	6	-46	4	3	-4	multi-exon	FALSE	canonical	3	37	junction_3	33.8904116233486	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGTTGTGGATTTACA	NA	False	NA	-7	True	AATAAA	-13	NA	104113707	104087412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112176_104112235_104113216_104113282_104113605
ENSMUSG00000087177.8_0	chr10	-	1935	6	NIC	ENSMUSG00000087177.8	novel	503	5	NA	NA	-30	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	5.31413210223457	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGTTTTTTCAGCAT	5785	False	NA	-1	True	AATAAA	-16	NA	39607875	39497409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_39498724_39508945_39509013_39515559_39515763_39516375_39516508_39557468_39557546_39607733
ENSMUSG00000087177.8_10	chr10	-	2510	4	ISM	ENSMUSG00000087177.8	ENSMUST00000139356.8	701	5	92	14935	19	1885	5prime_fragment	FALSE	canonical	1	4	junction_1	7.78888096369861	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATTAATAAAATCAAAAA	5907	False	NA	NA	False	NA	NA	NA	39607753	39513585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_39515763_39516271_39516508_39557468_39557546_39607733
ENSMUSG00000087177.8_11	chr10	-	2702	4	FSM	ENSMUSG00000087177.8	ENSMUST00000149830.8	660	4	137	-2179	-20	1611	multi-exon	FALSE	canonical	1	1	junction_2	9.56846672960488	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACATAGTGGAGCATGT	5795	False	NA	NA	False	NA	NA	NA	39607865	39528281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_39530685_39531835_39531926_39557468_39557546_39607733
ENSMUSG00000087177.8_12	chr10	-	2599	3	NIC	ENSMUSG00000087177.8	novel	660	4	NA	NA	-7	1611	intron_retention	FALSE	canonical	3	9	junction_1	7	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACATAGTGGAGCATGT	5808	False	NA	NA	False	NA	NA	NA	39607852	39528281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_39530685_39557468_39557546_39607733
ENSMUSG00000087177.8_13	chr10	-	1807	5	NIC	ENSMUSG00000087177.8	novel	503	5	NA	NA	-2	8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	4.32290411644765	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCATATATGTCTGT	5846	False	NA	9	True	AATAAA	-26	NA	39607814	39497399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_39498724_39508945_39509013_39515559_39515763_39516375_39516508_39607733
ENSMUSG00000087177.8_17	chr10	-	2004	6	NIC	ENSMUSG00000087177.8	novel	503	5	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	8.03492377064027	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGTTTTTTCAGCAT	5838	False	NA	-1	True	AATAAA	-16	NA	39607822	39497409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_39498724_39498898_39499088_39515559_39515763_39516375_39516508_39557468_39557546_39607733
ENSMUSG00000087177.8_19	chr10	-	2628	3	NIC	ENSMUSG00000087177.8	novel	660	4	NA	NA	-23	1611	intron_retention	FALSE	canonical	0	0	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACATAGTGGAGCATGT	5792	False	NA	NA	False	NA	NA	NA	39607868	39528281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_39530685_39531835_39531926_39607733
ENSMUSG00000087177.8_5	chr10	-	2167	7	NIC	ENSMUSG00000087177.8	novel	701	5	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	6.96818165345563	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGTTTTTTCAGCAT	5846	False	NA	-1	True	AATAAA	-16	NA	39607814	39497409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_39498724_39498898_39499088_39508945_39509013_39515559_39515763_39516271_39516508_39557468_39557546_39607733
ENSMUSG00000087177.8_9	chr10	-	2532	3	NIC	ENSMUSG00000087177.8	novel	701	5	NA	NA	-14	1911	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTTTTTTTTGTTACT	5834	False	NA	NA	False	AATAAA	-15	NA	39607826	39513559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_39515763_39516271_39516508_39607733
ENSMUSG00000087179.9_16	chr2	-	3191	4	FSM	ENSMUSG00000087179.9	ENSMUST00000137463.8	874	4	21	-2338	1	2338	multi-exon	FALSE	canonical	3	47	junction_3	57.393379409127	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGATGGTCTTTCGTGT	NA	False	NA	-4	True	NA	NA	NA	156681719	156672630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156675347_156679742_156679834_156680337_156680457_156681454
ENSMUSG00000087179.9_17	chr2	-	4625	4	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	3	2338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	77.271527025735	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGATGGTCTTTCGTGT	NA	False	NA	-4	True	NA	NA	NA	156681809	156672630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_156676959_156679742_156679834_156680337_156680457_156681722
ENSMUSG00000087179.9_20	chr2	-	3312	4	NIC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-1	2338	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	68.6164865190737	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGATGGTCTTTCGTGT	NA	False	NA	-4	True	NA	NA	NA	156681721	156672630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_156675347_156679742_156679834_156680337_156680457_156681335
ENSMUSG00000087179.9_23	chr2	-	3019	4	NIC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-8	2338	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	55.3915356550279	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGATGGTCTTTCGTGT	NA	False	NA	-4	True	NA	NA	NA	156681728	156672630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_156675347_156679742_156679834_156680337_156680457_156681635
ENSMUSG00000087193.8_0	chrX	+	1390	3	NIC	ENSMUSG00000087193.8	novel	1449	4	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	48	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTGGGCCACTGGAT	7712	False	NA	26	True	TATAAA	-16	NA	7915471	7939195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7915823_7936874_7937304_7938585
ENSMUSG00000087193.8_10	chrX	+	2456	3	ISM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	3	0	3	0	intron_retention	FALSE	canonical	3	56	junction_1	9.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTGGGCCACTGGAT	NA	False	NA	26	True	TATAAA	-16	NA	7917832	7939195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_7917897_7926454_7926526_7936874
ENSMUSG00000087193.8_12	chrX	+	993	4	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	-1	380	combination_of_known_junctions	TRUE	canonical	3	17	junction_3	24.1430919496424	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGATGTCCGTTTCCATC	NA	False	NA	NA	False	AATAAA	-20	NA	7917828	7941238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7917897_7926454_7926526_7936874_7937304_7940813
ENSMUSG00000087193.8_15	chrX	+	814	1	Genic_Genomic	ENSMUSG00000087193.8	novel	NA	NA	NA	NA	21175	620	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTAGGTGTATGCTGTCA	NA	False	NA	NA	False	TTTAAA	-29	NA	7939004	7939818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_7939000_7939800
ENSMUSG00000087193.8_2	chrX	+	1462	4	FSM	ENSMUSG00000087193.8	ENSMUST00000126286.8	1449	4	-16	3	-16	0	multi-exon	FALSE	canonical	3	19	junction_1	38.6091526281874	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTGGGCCACTGGAT	7711	False	NA	26	True	TATAAA	-16	NA	7915470	7939195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7915823_7926454_7926526_7936874_7937304_7938585
ENSMUSG00000087193.8_7	chrX	+	1109	3	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	67	junction_1	23	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTGGGCCACTGGAT	NA	False	NA	26	True	TATAAA	-16	NA	7917826	7939195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_7917897_7936874_7937304_7938585
ENSMUSG00000087193.8_8	chrX	+	1177	4	FSM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	-1	1	-1	-1	multi-exon	FALSE	canonical	3	56	junction_1	23.6971634495683	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCCTGGGCCACTGGA	NA	False	NA	25	True	TATAAA	-15	NA	7917828	7939194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_7917897_7926454_7926526_7936874_7937304_7938585
ENSMUSG00000087207.9_14	chr4	+	2890	5	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	25	-6	multi-exon	FALSE	canonical	0	0	junction_3	230.538906694727	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	4135	False	NA	NA	False	NA	NA	NA	147314765	147418185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_147314893_147316807_147316901_147337753_147337859_147409230_147409335_147415724
ENSMUSG00000087207.9_20	chr4	+	2370	6	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	1173	3	NA	NA	4039	182328	multi-exon	TRUE	non_canonical	0	0	junction_1	53.2	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	8149	False	NA	6	True	NA	NA	NA	147318779	147600519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_147318928_147337800_147337859_147342850_147343293_147416173_147416553_147417056_147418031_147600150
ENSMUSG00000087207.9_4	chr4	+	3019	6	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	23	-6	multi-exon	FALSE	canonical	0	0	junction_3	204.124079912195	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	4133	False	NA	NA	False	NA	NA	NA	147314763	147418185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_147314893_147316807_147316901_147337753_147337859_147409230_147409335_147413438_147413566_147415724
ENSMUSG00000087213.3_0	chr1	-	679	2	FSM	ENSMUSG00000087213.3	ENSMUST00000150749.2	711	2	27	5	-4	-5	multi-exon	FALSE	canonical	3	111	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTGAAACAGTGCTACC	7954	False	NA	-21	True	AATAAA	-16	NA	64729791	64719034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_64719545_64729622
ENSMUSG00000087231.8_1	chr6	+	644	2	FSM	ENSMUSG00000087231.8	ENSMUST00000147548.3	698	2	51	3	1	-3	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGGAGAGTGTTGAC	NA	False	NA	NA	False	NA	NA	NA	67013639	67040742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_67013920_67040378
ENSMUSG00000087259.8_1	chr11	-	1845	3	NNC	ENSMUSG00000087259.8	novel	1861	3	NA	NA	-1	-15	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	1	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAATTCCTCTGTAAAT	NA	False	NA	NA	False	TATAAA	-8	NA	113092665	112934735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_112935987_112958167_112958213_113092116
ENSMUSG00000087259.8_3	chr11	-	1800	2	NNC	ENSMUSG00000087259.8	novel	1861	3	NA	NA	-1	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAATTCCTCTGTAAAT	NA	False	NA	NA	False	TATAAA	-8	NA	113092665	112934735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_112935987_113092116
ENSMUSG00000087260.6_0	chr3	+	714	4	FSM	ENSMUSG00000087260.6	ENSMUST00000199317.2	743	4	24	5	24	-2	multi-exon	FALSE	canonical	3	1062	junction_2	64.8194072447099	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAAGTTTGGTTCATTTCT	3175	False	NA	7	True	AATAAA	-11	NA	107186338	107191393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_107186430_107187185_107187248_107189224_107189343_107190950
ENSMUSG00000087283.2_10	chr2	+	704	2	NIC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-15	-6	intron_retention	FALSE	canonical	3	174	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAAGTGTGGTGGTATAC	9331	False	NA	NA	False	NA	NA	NA	60241853	60242917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_60242353_60242712
ENSMUSG00000087283.2_2	chr2	+	493	4	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-27247	-7	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	58.0344725141876	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAAGTGTGGTGGTATA	2639	False	NA	NA	False	NA	NA	NA	60214621	60242916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_60214668_60241980_60242062_60242190_60242353_60242712
ENSMUSG00000087283.2_7	chr2	+	575	3	FSM	ENSMUSG00000087283.2	ENSMUST00000131457.2	566	3	-15	6	-15	-6	multi-exon	FALSE	canonical	3	174	junction_2	3	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAAGTGTGGTGGTATAC	9331	False	NA	NA	False	NA	NA	NA	60241853	60242917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_60242062_60242190_60242353_60242712
ENSMUSG00000087307.2_2	chr4	+	562	3	NNC	ENSMUSG00000087307.2	novel	431	2	NA	NA	-2630	-1	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	12.5	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGACCATTGTGGTTCA	NA	False	NA	8	True	NA	NA	NA	123557043	123565009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_+_123557174_123561406_123561541_123564711
ENSMUSG00000087332.2_0	chr4	+	1813	2	FSM	ENSMUSG00000087332.2	ENSMUST00000132108.2	354	2	-5	-1454	-5	1454	multi-exon	TRUE	canonical	3	84	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTGTTTGGCTGATGA	NA	False	NA	NA	False	AATACA	-16	NA	99457731	99462702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_99457876_99461033
ENSMUSG00000087368.8_11	chrX	+	1726	11	NIC	ENSMUSG00000087368.8	novel	3201	10	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	8.91291198206288	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAAATGAGTGTCATT	NA	False	NA	NA	False	AATAAA	-16	NA	135642588	135704104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_135642700_135644151_135644210_135645241_135645458_135648071_135648198_135658849_135658946_135659308_135659508_135660604_135660668_135661166_135661325_135662739_135662838_135689269_135689367_135703600
ENSMUSG00000087368.8_30	chrX	+	4340	10	FSM	ENSMUSG00000087368.8	ENSMUST00000134066.8	3201	10	-1142	3	10	-3	multi-exon	FALSE	canonical	0	0	junction_8	8.4648875354404	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAAATAAAAATGAGTGTC	NA	False	NA	NA	False	AATAAA	-13	NA	135642582	135704101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_135645458_135648071_135648198_135657242_135657370_135658849_135658946_135659308_135659508_135660604_135660668_135661166_135661325_135662739_135662838_135689269_135689367_135703600
ENSMUSG00000087370.4_0	chr13	+	7507	3	FSM	ENSMUSG00000087370.4	ENSMUST00000129449.3	7168	3	-347	8	-38	-8	multi-exon	FALSE	canonical	3	21	junction_2	1.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTATACAGTGCTGAA	NA	False	NA	NA	False	AATAAA	-10	NA	41759344	41794823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_41759789_41781453_41781625_41787931
ENSMUSG00000087370.4_1	chr13	+	7330	2	FSM	ENSMUSG00000087370.4	ENSMUST00000221694.2	602	2	-32	-6696	-32	-8	multi-exon	FALSE	canonical	2	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTATACAGTGCTGAA	NA	False	NA	NA	False	AATAAA	-10	NA	41759350	41794823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_41759789_41787931
ENSMUSG00000087370.4_2	chr13	+	3705	1	ISM	ENSMUSG00000087370.4	ENSMUST00000129449.3	7168	3	31427	8	31427	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTATACAGTGCTGAA	NA	False	NA	NA	False	AATAAA	-10	NA	41791118	41794823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_41791100_41794800
ENSMUSG00000087377.2_0	chr2	+	473	2	FSM	ENSMUSG00000087377.2	ENSMUST00000124336.2	921	2	32	416	32	-416	multi-exon	FALSE	canonical	3	32	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGCATGGTTTCTAGAAT	577	False	NA	NA	False	NA	NA	NA	132095308	132102837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_132095450_132102505
ENSMUSG00000087396.8_2	chrX	-	2776	2	ISM	ENSMUSG00000087396.8	ENSMUST00000130744.8	3369	9	33466	-508	-20528	508	3prime_fragment	FALSE	canonical	1	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCGGTGCAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-4	NA	74774839	74768562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_74771125_74774625
ENSMUSG00000087403.10_0	chrX	-	4178	3	FSM	ENSMUSG00000087403.10	ENSMUST00000195280.3	4212	3	27	7	2	-7	multi-exon	FALSE	canonical	3	16	junction_2	19	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGTGAATGACTGTGT	NA	False	NA	NA	False	NA	NA	NA	151110464	151077830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_151081871_151110156_151110236_151110405
ENSMUSG00000087403.10_1	chrX	-	4222	3	FSM	ENSMUSG00000087403.10	ENSMUST00000148326.8	584	3	27	-3665	2	-7	multi-exon	FALSE	canonical	3	54	junction_1	13.5	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGTGAATGACTGTGT	NA	False	NA	NA	False	NA	NA	NA	151110464	151077830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_151081871_151110156_151110236_151110361
ENSMUSG00000087403.10_4	chrX	-	2408	1	ISM	ENSMUSG00000087403.10	ENSMUST00000195280.3	4212	3	30256	4	20772	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAATGACTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	151080235	151077827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_-_151077800_151080200
ENSMUSG00000087403.10_6	chrX	-	4297	4	FSM	ENSMUSG00000087403.10	ENSMUST00000181635.8	398	4	-5	-3894	2	-7	multi-exon	FALSE	canonical	3	22	junction_1	27.8128667266709	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGTGAATGACTGTGT	NA	False	NA	NA	False	NA	NA	NA	151110464	151077830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_151081871_151103205_151103281_151110156_151110236_151110361
ENSMUSG00000087403.10_9	chrX	-	4253	4	NIC	ENSMUSG00000087403.10	novel	398	4	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	2.82842712474619	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGTGAATGACTGTGT	NA	False	NA	NA	False	NA	NA	NA	151110464	151077830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_151081871_151103205_151103281_151110156_151110236_151110405
ENSMUSG00000087408.11_0	chr8	+	2683	8	FSM	ENSMUSG00000087408.11	ENSMUST00000140239.4	2711	8	11	17	11	-17	multi-exon	FALSE	canonical	3	19	junction_4	3.65892813567591	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAAAATTAAGTTCCATT	2381	False	NA	NA	False	AAAAAG	-16	NA	70768447	70784220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70768759_70770840_70771001_70774153_70774335_70775177_70775340_70775751_70775900_70776010_70776121_70782187_70782927_70783348
ENSMUSG00000087408.11_3	chr8	+	3116	7	ISM	ENSMUSG00000087408.11	ENSMUST00000140239.4	2711	8	15	2	15	-2	intron_retention	FALSE	canonical	3	19	junction_4	3.09569593683445	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGCGTTGGCGCAGGTG	2385	False	NA	NA	False	AAAAAG	-31	NA	70768451	70784235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70768759_70770840_70771001_70774153_70774335_70775177_70775340_70775751_70775900_70776010_70776121_70782187
ENSMUSG00000087408.11_6	chr8	+	2366	7	ISM	ENSMUSG00000087408.11	ENSMUST00000140239.4	2711	8	2410	17	-153	-17	3prime_fragment	FALSE	canonical	3	19	junction_3	3.947573094109	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAAAATTAAGTTCCATT	4780	False	NA	NA	False	AAAAAG	-16	NA	70770846	70784220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_70771001_70774153_70774335_70775177_70775340_70775751_70775900_70776010_70776121_70782187_70782927_70783348
ENSMUSG00000087412.5_0	chr7	-	685	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	-21	-39	-21	1	mono-exon	FALSE	NA	NA	NA	NA	NA	793	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	-21	True	AATAAA	-16	NA	92828873	92828188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_92828200_92828900
ENSMUSG00000087428.2_3	chrX	+	1511	7	NIC	ENSMUSG00000087428.2	novel	632	6	NA	NA	4	2594	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	13.228756555323	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAGTGATTCTGCAATC	NA	False	NA	NA	False	GATAAA	-9	NA	134230513	134252470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134230653_134232087_134232178_134233599_134233689_134238796_134238896_134249759_134250060_134250503_134251086_134252258
ENSMUSG00000087428.2_8	chrX	+	4823	6	NIC	ENSMUSG00000087428.2	novel	632	6	NA	NA	3	4732	intron_retention	FALSE	canonical	3	10	junction_3	13.8043471413899	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAACATTATCTGTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	134230512	134254608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134230653_134232087_134232178_134233599_134233689_134238796_134238896_134249759_134250060_134250503
ENSMUSG00000087428.2_9	chrX	+	3461	5	NIC	ENSMUSG00000087428.2	novel	632	6	NA	NA	4	4732	combination_of_known_splicesites	FALSE	canonical	2	2	junction_2	11.0989864402116	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAACATTATCTGTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	134230513	134254608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_134230653_134232087_134232178_134249759_134250060_134250503_134251086_134252258
ENSMUSG00000087440.3_0	chr3	+	1642	1	FSM	ENSMUSG00000087440.3	ENSMUST00000139771.3	1625	1	-37	20	-37	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAAGTAATCATCTGT	NA	False	NA	NA	False	AATAAA	-9	NA	51184142	51185784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_51184100_51185800
ENSMUSG00000087455.8_0	chr2	-	1301	1	ISM	ENSMUSG00000087455.8	ENSMUST00000137162.8	1635	3	2880	0	2880	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTACATTTGTGATTG	NA	False	NA	NA	False	ATTAAA	-13	NA	59214146	59212845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_59212800_59214100
ENSMUSG00000087455.8_2	chr2	-	1576	2	ISM	ENSMUSG00000087455.8	ENSMUST00000137162.8	1635	3	1872	0	1872	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTACATTTGTGATTG	NA	False	NA	NA	False	ATTAAA	-13	NA	59215154	59212845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_59214299_59215031
ENSMUSG00000087455.8_4	chr2	-	1765	3	FSM	ENSMUSG00000087455.8	ENSMUST00000155111.2	463	3	-11	-1291	-11	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTACATTTGTGATTG	NA	False	NA	NA	False	ATTAAA	-13	NA	59217826	59212845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_59214299_59215031_59215155_59217637
ENSMUSG00000087461.3_0	chr2	-	1658	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	80971	-905	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1	20	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACTGTTTACCCTCAA	NA	False	NA	NA	False	NA	NA	NA	33916770	33909205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_33910509_33915810_33915970_33916574
ENSMUSG00000087497.8_0	chr11	+	866	2	FSM	ENSMUSG00000087497.8	ENSMUST00000135037.8	901	2	32	3	32	-3	multi-exon	FALSE	canonical	3	11	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTGTTTCATGTTTC	4266	False	NA	NA	False	AATAAA	-19	NA	63970341	63974082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_63970604_63973478
ENSMUSG00000087543.2_3	chr15	+	7130	1	Genic_Genomic	ENSMUSG00000087543.2	novel	NA	NA	NA	NA	10090	2523	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGTTGTTTGTTTGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	79636988	79644118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_79637000_79644100
ENSMUSG00000087547.2_0	chr2	-	632	2	FSM	ENSMUSG00000087547.2	ENSMUST00000131365.2	629	2	0	-3	0	3	multi-exon	FALSE	canonical	3	113	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTGGCCAAATATGTAT	8707	False	NA	-10	True	NA	NA	NA	157439240	157437499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_157437906_157439014
ENSMUSG00000087590.3_0	chr18	+	404	3	FSM	ENSMUSG00000087590.3	ENSMUST00000146010.3	430	3	27	-1	-20	1	multi-exon	FALSE	canonical	3	377	junction_1	24	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACGTGTATGTTGTGTGA	NA	False	NA	16	True	AATAAA	-20	NA	33927971	33929040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_33928178_33928435_33928499_33928905
ENSMUSG00000087590.3_1	chr18	+	461	2	NIC	ENSMUSG00000087590.3	novel	430	3	NA	NA	180	0	intron_retention	FALSE	canonical	3	425	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACGTGTATGTTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	33928171	33929039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_33928499_33928905
ENSMUSG00000087598.10_0	chr7	-	2658	4	FSM	ENSMUSG00000087598.10	ENSMUST00000086006.12	6402	4	25	3719	3	416	multi-exon	TRUE	canonical	3	37	junction_1	10.4986771653491	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACATCTAGTCTTTT	NA	False	NA	NA	False	TATAAA	-23	NA	23907549	23897090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_23899468_23902794_23902922_23906482_23906541_23907453
ENSMUSG00000087598.10_3	chr7	-	2654	1	ISM	ENSMUSG00000087598.10	ENSMUST00000086006.12	6402	4	9583	1966	5017	964	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCATTTATTTGTGCTCT	NA	False	NA	NA	False	NA	NA	NA	23897991	23895337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_23895300_23898000
ENSMUSG00000087648.2_1	chr2	-	1305	2	FSM	ENSMUSG00000087648.2	ENSMUST00000129713.2	1309	2	5	-1	5	1	multi-exon	FALSE	canonical	3	24	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATTAGCTACTTTATTT	7134	False	NA	-3	True	NA	NA	NA	167996428	167994521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_167995672_167996273
ENSMUSG00000087651.4_0	chr10	+	651	6	FSM	ENSMUSG00000087651.4	ENSMUST00000150459.3	1194	6	72	471	11	128	multi-exon	FALSE	canonical	3	89	junction_4	8.16333265278342	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATATTGCCTCTTGTCTT	NA	False	NA	6	True	CATAAA	-16	NA	83558800	83598155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595456_83595495_83597781
ENSMUSG00000087651.4_2	chr10	+	1114	6	NIC	ENSMUSG00000087651.4	novel	1194	6	NA	NA	10	-4	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	34.6098251945889	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCTGGATTTCTTAATT	NA	False	NA	2	True	ATTAAA	-15	NA	83558799	83598622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595461_83595495_83597781
ENSMUSG00000087658.3_2	chr6	+	418	2	FSM	ENSMUSG00000087658.3	ENSMUST00000159006.2	253	2	-104	-61	-12	-38	multi-exon	FALSE	canonical	3	38	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTAGCAGCTTGGTAA	NA	False	NA	21	True	AATAAA	-30	NA	52135399	52139061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_52135667_52138910
ENSMUSG00000087679.3_0	chr2	-	2395	2	FSM	ENSMUSG00000087679.3	ENSMUST00000133808.2	2483	2	87	1	87	-1	multi-exon	FALSE	canonical	3	70	junction_1	0	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGAGTGATTGCTTAC	NA	False	NA	-7	True	ATTAAA	-18	NA	26030446	26026826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26028926_26030150
ENSMUSG00000087679.3_1	chr2	-	3489	1	FSM	ENSMUSG00000087679.3	ENSMUST00000163836.2	420	1	-1501	-1568	218	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGAGTGATTGCTTAC	NA	False	NA	-7	True	ATTAAA	-18	NA	26030315	26026826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_26026800_26030300
ENSMUSG00000087687.4_0	chr8	+	313	4	FSM	ENSMUSG00000087687.4	ENSMUST00000156380.4	1193	4	17	863	13	0	multi-exon	FALSE	canonical	3	539	junction_1	68.3715340376876	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5604	False	NA	10	True	NA	NA	NA	3671567	3673372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3671612_3672341_3672429_3672592_3672626_3673223
ENSMUSG00000087687.4_7	chr8	+	1005	3	NIC	ENSMUSG00000087687.4	novel	363	4	NA	NA	4	0	intron_retention	FALSE	canonical	3	673	junction_2	10	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5642	False	NA	10	True	NA	NA	NA	3671605	3673372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_3672429_3672592_3672626_3673223
ENSMUSG00000087687.4_9	chr8	+	360	4	FSM	ENSMUSG00000087687.4	ENSMUST00000207389.2	363	4	3	0	3	0	multi-exon	FALSE	canonical	0	0	junction_1	322.072800603977	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5641	False	NA	10	True	NA	NA	NA	3671604	3673372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_3671696_3672341_3672429_3672592_3672626_3673223
ENSMUSG00000088252.3_0	chr8	-	106	1	FSM	ENSMUSG00000088252.3	ENSMUST00000157627.3	104	1	0	-2	0	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTAGGAGGATCCTCCAC	NA	False	NA	-10	True	NA	NA	NA	31639995	31639889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_31639900_31640000
ENSMUSG00000088254.3_0	chr9	+	134	1	FSM	ENSMUSG00000088254.3	ENSMUST00000157629.3	135	1	-2	3	-2	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGATTTTAAAAACTTTT	NA	False	NA	23	True	NA	NA	NA	64203210	64203344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_64203200_64203300
ENSMUSG00000088308.3_0	chr13	+	134	1	FSM	ENSMUSG00000088308.3	ENSMUST00000157683.3	134	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCATGGGAGGGCCTTCC	NA	False	NA	4	True	NA	NA	NA	90247099	90247233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_90247100_90247200
ENSMUSG00000089647.3_0	chr15	-	2875	3	NIC	ENSMUSG00000089647.3	novel	3376	7	NA	NA	-13035	43	intron_retention	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAAACTCTCTCTTTCT	NA	False	NA	NA	False	GATAAA	-4	NA	6649398	6633778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_6636386_6639577_6639674_6649226
ENSMUSG00000089661.10_0	chr7	-	536	4	FSM	ENSMUSG00000089661.10	ENSMUST00000071986.13	566	4	25	5	3	-3	multi-exon	FALSE	canonical	3	138	junction_1	9.2736184954957	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTATTTGTCTCTTTGGT	NA	False	NA	-5	True	AATACA	-13	NA	26880549	26879171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_26879260_26879593_26879705_26880124_26880259_26880346
ENSMUSG00000089665.3_0	chr8	-	369	2	FSM	ENSMUSG00000089665.3	ENSMUST00000159364.3	392	2	23	0	23	0	multi-exon	FALSE	canonical	3	78	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTGATGTCTTTCTAT	NA	False	NA	-4	True	AATACA	-15	NA	3722339	3721187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_3721397_3722179
ENSMUSG00000089679.2_0	chr19	-	7294	2	FSM	ENSMUSG00000089679.2	ENSMUST00000162724.2	2766	2	11	-4539	11	4539	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCAAACATTCTTCCAGGC	NA	False	NA	NA	False	AGTAAA	-6	NA	53813548	53803245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_53810514_53813522
ENSMUSG00000089682.11_0	chr14	+	3479	4	FSM	ENSMUSG00000089682.11	ENSMUST00000022806.10	3509	4	26	4	22	-4	multi-exon	FALSE	canonical	2	4	junction_2	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTACTGAACAGGGTTT	NA	False	NA	21	True	AATAAA	-25	NA	55120859	55125687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55120964_55121253_55121342_55121830_55122271_55122840
ENSMUSG00000089682.11_1	chr14	+	2133	1	ISM	ENSMUSG00000089682.11	ENSMUST00000022806.10	3509	4	2721	4	2591	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTACTGAACAGGGTTT	NA	False	NA	21	True	AATAAA	-25	NA	55123554	55125687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55123600_55125700
ENSMUSG00000089687.3_0	chr4	-	2476	2	FSM	ENSMUSG00000089687.3	ENSMUST00000040411.7	761	2	33	-1748	33	1748	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCATGTATGTTGTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	132030663	132027759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_132029994_132030421
ENSMUSG00000089704.10_0	chr8	+	4087	16	FSM	ENSMUSG00000089704.10	ENSMUST00000034458.9	4113	16	19	7	19	-7	multi-exon	FALSE	canonical	3	174	junction_3	15.1299555701778	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATAATCCTCCGCCGCTG	8584	False	NA	25	True	AATAAA	-15	NA	124958148	125072454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_124958389_125022096_125022191_125032253_125032408_125050410_125050510_125050730_125050799_125051009_125051076_125054830_125054953_125056451_125056540_125058747_125058836_125059306_125059411_125061013_125061141_125063312_125063406_125064000_125064085_125065181_125065309_125067557_125067678_125070041
ENSMUSG00000089704.10_15	chr8	+	2913	6	ISM	ENSMUSG00000089704.10	ENSMUST00000034458.9	4113	16	102936	6	38961	-6	3prime_fragment	FALSE	canonical	3	184	junction_1	8.27042925125413	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAATCCTCCGCCGCTGT	6919	False	NA	26	True	AATAAA	-16	NA	125061065	125072455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125061141_125063312_125063406_125064000_125064085_125065181_125065309_125067557_125067678_125070041
ENSMUSG00000089704.10_19	chr8	+	1642	1	ISM	ENSMUSG00000089704.10	ENSMUST00000034458.9	4113	16	112688	2	48713	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTCCGCCGCTGTCAGT	NA	False	NA	30	True	AATAAA	-20	NA	125070817	125072459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125070800_125072500
ENSMUSG00000089715.13_0	chr15	-	1532	1	FSM	ENSMUSG00000089715.13	ENSMUST00000230681.2	7850	1	6305	13	6154	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTTTAAAAAGGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79711845	79710313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79710300_79711800
ENSMUSG00000089715.13_1	chr15	-	3135	5	FSM	ENSMUSG00000089715.13	ENSMUST00000109627.8	5806	5	426	2245	12	0	multi-exon	FALSE	canonical	3	119	junction_1	17.0367250374008	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79718463	79710341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79713180_79717712_79717780_79717902_79717969_79718115_79718160_79718343
ENSMUSG00000089715.13_4	chr15	-	3073	5	FSM	ENSMUSG00000089715.13	ENSMUST00000109625.8	3056	5	-17	0	-17	0	multi-exon	FALSE	canonical	2	10	junction_1	62.5114989421946	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79718455	79710341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79713126_79717712_79717780_79717902_79717969_79718115_79718160_79718343
ENSMUSG00000089726.3_1	chr14	+	2226	1	FSM	ENSMUSG00000076062.3	ENSMUST00000102108.3	80	1	73	-2219	73	2219	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGATCTTGTATCTTGTTT	NA	False	NA	5	True	AATAAA	-17	NA	115281931	115284157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_115281900_115284200
ENSMUSG00000089736.3_1	chr8	+	3499	5	Fusion	ENSMUSG00000089736.3_ENSMUSG00000002948.20	novel	1075	7	NA	NA	189	-3	intron_retention	FALSE	canonical	2	6	junction_1	3.39116499156263	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTCTGGTGGAGTCAAT	NA	False	NA	NA	False	AATAAA	-13	NA	4296861	4301420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr8_+_4299342_4299425_4299747_4300266_4300382_4300466_4300922_4301292
ENSMUSG00000089736.3_4	chr8	+	766	5	ISM	ENSMUSG00000089736.3	ENSMUST00000110993.2	1075	7	1243	2	579	-2	3prime_fragment	FALSE	canonical	2	3	junction_3	4.38035386698381	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCTGGTGGAGTCAATA	NA	False	NA	NA	False	AATAAA	-14	NA	4299456	4301421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_4299747_4300266_4300382_4300466_4300626_4300848_4300922_4301292
ENSMUSG00000089739.3_0	chr2	-	1672	3	ISM	ENSMUSG00000078923.11	ENSMUST00000109207.10	2041	4	14122	209	-7325	-3	3prime_fragment	FALSE	canonical	3	2304	junction_1	23.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTCGGTGGTTTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	167459893	167449766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_167451168_167452223_167452350_167459748
ENSMUSG00000089739.3_2	chr2	-	1484	2	FSM	ENSMUSG00000078923.11	ENSMUST00000144628.2	647	2	262	-1099	262	-3	multi-exon	FALSE	canonical	3	2304	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTCGGTGGTTTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	167452306	167449766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_167451168_167452223
ENSMUSG00000089739.3_3	chr2	-	1977	5	NIC	ENSMUSG00000089739.3	novel	2367	8	NA	NA	-57	3	combination_of_known_splicesites	FALSE	canonical	1	12	junction_3	1101.59415734652	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTCGGTGGTTTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	167503473	167449766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_167451168_167452223_167452350_167459748_167459898_167496527_167496648_167503292
ENSMUSG00000089739.3_6	chr2	-	2854	5	ISM	ENSMUSG00000089739.3	ENSMUST00000125544.3	2367	8	-51	34805	-51	-34805	5prime_fragment	FALSE	canonical	3	221	junction_1	16.0214699700121	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	167503467	167484574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_167486897_167487951_167488097_167488887_167488980_167496527_167496648_167503292
ENSMUSG00000089739.3_9	chr2	-	3966	4	NIC	ENSMUSG00000090213.2	novel	2329	6	NA	NA	-8	-7	intron_retention	FALSE	canonical	3	233	junction_1	12.2836838484589	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACAACTTCTTTATTATA	NA	False	NA	NA	False	NA	NA	NA	167503484	167484534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_167488097_167488887_167488980_167496527_167496648_167503292
ENSMUSG00000089756.3_1	chr2	-	6522	4	FSM	ENSMUSG00000089756.3	ENSMUST00000108949.3	2939	4	-34	-3549	15	3549	multi-exon	FALSE	canonical	3	12	junction_1	13.5728487143349	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	175722878	175707124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175713362_175714514_175714576_175714781_175714909_175722781
ENSMUSG00000089762.4_0	chr2	-	1570	1	FSM	ENSMUSG00000089762.4	ENSMUST00000065134.4	2683	1	2	1111	2	-1111	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAAAAAAAAATCT	NA	False	NA	-36	True	TATAAA	-5	NA	30364229	30362659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_30362700_30364200
ENSMUSG00000089768.3_0	chrX	-	431	3	FSM	ENSMUSG00000089768.3	ENSMUST00000113071.2	439	3	6	2	6	-2	multi-exon	FALSE	canonical	3	31	junction_1	50	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGTGTGTAACTTCCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	135877617	135874772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_135874989_135876146_135876252_135877507
ENSMUSG00000089774.3_0	chr16	+	2860	2	FSM	ENSMUSG00000089774.3	ENSMUST00000113975.3	10913	2	1	8052	1	-4387	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATGTGGTTTGAGAGT	6338	False	NA	NA	False	NA	NA	NA	91855210	91876309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_91855369_91873607
ENSMUSG00000089774.3_1	chr16	+	2915	1	ISM	ENSMUSG00000089774.3	ENSMUST00000113975.3	10913	2	26235	2	6495	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTCTGTGCCTCAGTG	NA	False	NA	10	True	AATAAA	-11	NA	91881444	91884359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_91881400_91884400
ENSMUSG00000089782.2_0	chr1	-	834	1	FSM	ENSMUSG00000089782.2	ENSMUST00000162698.2	489	1	-105	-240	-105	240	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	8438	False	NA	NA	False	AATAAA	-40	NA	97877219	97876385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_97876400_97877200
ENSMUSG00000089803.4_0	chr1	-	1034	1	FSM	ENSMUSG00000089803.4	ENSMUST00000126220.3	628	1	-45	-361	-45	361	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAGAAAAAAAAAAATT	NA	False	NA	NA	False	AATAAA	-6	NA	171972513	171971479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_171971500_171972500
ENSMUSG00000089809.10_1	chr5	-	2907	14	FSM	ENSMUSG00000089809.10	ENSMUST00000031276.15	2990	14	82	1	82	-1	multi-exon	FALSE	canonical	0	0	junction_10	2.0897042626471	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGAGTTGTGGCGTCT	NA	False	NA	-2	True	AATACA	-14	NA	99400704	99365285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_99366658_99369219_99369293_99370176_99370301_99370798_99370895_99375846_99375943_99377179_99377260_99379949_99380053_99380160_99380257_99381773_99381849_99382334_99382551_99388681_99388820_99389267_99389391_99390922_99391106_99400572
ENSMUSG00000089809.10_2	chr5	-	2919	14	FSM	ENSMUSG00000089809.10	ENSMUST00000168092.8	2987	14	67	1	67	-1	multi-exon	FALSE	canonical	1	1	junction_13	1.81707874015657	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGAGTTGTGGCGTCT	NA	False	NA	-2	True	AATACA	-14	NA	99400719	99365285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_99366658_99369219_99369293_99370176_99370301_99370798_99370895_99375846_99375943_99377179_99377260_99379949_99380053_99380160_99380257_99381773_99381849_99382334_99382548_99388681_99388820_99389267_99389391_99390922_99391106_99400572
ENSMUSG00000089818.2_0	chr16	-	187	1	FSM	ENSMUSG00000089818.2	ENSMUST00000162902.2	1973	1	1605	181	1605	-181	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTCCTTCCGAGTGGACA	1554	False	NA	0	True	NA	NA	NA	13737658	13737471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_13737500_13737700
ENSMUSG00000089824.11_0	chr2	-	2066	1	NIC	ENSMUSG00000098950.8	novel	4955	16	NA	NA	-19	-15458	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTATGTACCTTTAT	6427	False	NA	-12	True	AATAAA	-16	NA	155938867	155936801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_155936800_155938900
ENSMUSG00000089827.2_0	chr13	-	280	1	ISM	ENSMUSG00000089827.2	ENSMUST00000161006.2	1044	2	792	229	792	-229	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGGAATTGGGAAAAATA	NA	False	NA	NA	False	AATAAA	-21	NA	81032851	81032571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_81032600_81032900
ENSMUSG00000089832.9_1	chr7	-	2304	18	FSM	ENSMUSG00000089832.9	ENSMUST00000003857.7	2358	18	50	4	-15	0	multi-exon	FALSE	canonical	3	272	junction_5	29.8825845289775	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGTTTATAGTCTTGG	NA	False	NA	-32	True	AATAAA	-13	NA	27055394	27041561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
ENSMUSG00000089832.9_15	chr7	-	2786	17	NIC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	-15	0	intron_retention	FALSE	canonical	3	272	junction_4	30.5955853637416	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGTTTATAGTCTTGG	NA	False	NA	-32	True	AATAAA	-13	NA	27055394	27041561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27041970_27042070_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
ENSMUSG00000089832.9_16	chr7	-	2132	17	NIC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	85.4033627850801	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGTTTATAGTCTTGG	NA	False	NA	-32	True	AATAAA	-13	NA	27055393	27041561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
ENSMUSG00000089832.9_4	chr7	-	2301	18	NIC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_2	81.6590938748205	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGTTTATAGTCTTGG	NA	False	NA	-32	True	AATAAA	-13	NA	27055394	27041561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27041970_27042070_27042183_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
ENSMUSG00000089832.9_9	chr7	-	2302	18	NNC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	83.2819033915889	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGTTTATAGTCTTGG	NA	False	NA	-32	True	AATAAA	-13	NA	27055393	27041561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054639_27054713_27054825_27054872_27054997_27055052_27055295
ENSMUSG00000089837.10_1	chr15	-	4491	8	FSM	ENSMUSG00000089837.10	ENSMUST00000023060.13	1162	8	-6	-3323	-6	3323	multi-exon	FALSE	canonical	2	3	junction_4	65.4759653675784	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGGCTCTTCTGTCATAT	NA	False	NA	-2	True	AATAAA	-16	NA	79718444	79670552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79674118_79674466_79674647_79676803_79677052_79678456_79678677_79717712_79717780_79717902_79717969_79718115_79718160_79718343
ENSMUSG00000089837.10_3	chr15	-	4771	9	FSM	ENSMUSG00000089837.10	ENSMUST00000089299.6	1453	9	3	-3321	3	3321	multi-exon	FALSE	canonical	0	0	junction_4	63.1870981688509	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGAGGCTCTTCTGTCAT	NA	False	NA	-4	True	AATAAA	-14	NA	79718435	79670554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_79674118_79674466_79674647_79676803_79677052_79678456_79678677_79712888_79713180_79717712_79717780_79717902_79717969_79718115_79718160_79718343
ENSMUSG00000089847.9_0	chr7	+	489	3	FSM	ENSMUSG00000089847.9	ENSMUST00000106783.8	3273	3	497	2287	2	2	multi-exon	FALSE	canonical	3	351	junction_1	22.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGTCTATGGGTACC	NA	False	NA	9	True	AATAAA	-18	NA	105289759	105290557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_105289830_105289968_105290065_105290234
ENSMUSG00000089847.9_1	chr7	+	605	4	FSM	ENSMUSG00000089847.9	ENSMUST00000058333.10	694	4	85	4	-18	0	multi-exon	FALSE	canonical	3	108	junction_3	126.499011853848	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAAGAAGTGCTTTCTT	NA	False	NA	NA	False	AATAAA	-7	NA	105289739	105291046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105290828
ENSMUSG00000089847.9_2	chr7	+	508	4	FSM	ENSMUSG00000089847.9	ENSMUST00000210350.2	529	4	11	10	-2	0	multi-exon	FALSE	canonical	3	28	junction_3	163.903087897154	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAAGAAGTGCTTTCTT	NA	False	NA	NA	False	AATAAA	-7	NA	105289768	105291046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_105289830_105289968_105290065_105290234_105290368_105290828
ENSMUSG00000089847.9_4	chr7	+	2924	2	FSM	ENSMUSG00000089847.9	ENSMUST00000151193.2	1083	2	4	-1845	1	-2	multi-exon	FALSE	canonical	3	351	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTGTCTGTGTTTCCTT	NA	False	NA	NA	False	AATAAA	-10	NA	105289774	105292837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_105289830_105289968
ENSMUSG00000089847.9_8	chr7	+	320	1	ISM	ENSMUSG00000089847.9	ENSMUST00000106783.8	3273	3	975	2287	-86	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGTCTATGGGTACC	NA	False	NA	9	True	AATAAA	-18	NA	105290237	105290557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_105290200_105290600
ENSMUSG00000089847.9_9	chr7	+	416	2	ISM	ENSMUSG00000089847.9	ENSMUST00000106784.2	494	4	441	-14	-86	0	3prime_fragment	FALSE	canonical	3	108	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAAGAAGTGCTTTCTT	NA	False	NA	NA	False	AATAAA	-7	NA	105290237	105291046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_105290436_105290828
ENSMUSG00000089857.10_0	chr8	+	3066	3	FSM	ENSMUSG00000089857.10	ENSMUST00000110002.8	3152	3	4	82	4	-82	multi-exon	FALSE	canonical	2	4	junction_2	2.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAATAATAATAA	NA	False	NA	NA	False	NA	NA	NA	72662455	72670116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_72662583_72666965_72667093_72667304
ENSMUSG00000089862.9_0	chr6	+	2047	4	FSM	ENSMUSG00000089862.9	ENSMUST00000159433.8	2025	4	-22	0	-20	0	multi-exon	FALSE	canonical	2	17	junction_2	5.43650214343336	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAAATGGCTTTCATTGC	-12	True	NA	NA	False	AATAAA	-22	NA	8259407	8428760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_8259494_8270472_8270582_8373905_8373968_8426970
ENSMUSG00000089862.9_3	chr6	+	1310	1	ISM	ENSMUSG00000089862.9	ENSMUST00000162034.8	2015	3	168066	7	7770	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCACAAAATGGCTTTCAT	NA	False	NA	NA	False	AATAAA	-19	NA	8427447	8428757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_8427400_8428800
ENSMUSG00000089865.3_0	chr9	+	2091	2	FSM	ENSMUSG00000034563.17	ENSMUST00000131924.2	573	2	436	-1954	436	0	multi-exon	FALSE	canonical	3	172	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATGAGACTGCTTTC	4831	False	NA	NA	False	NA	NA	NA	72917605	72921213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72917695_72919211
ENSMUSG00000089865.3_1	chr9	+	1747	2	ISM	ENSMUSG00000034563.17	ENSMUST00000085350.11	2969	9	26628	16	2345	-16	3prime_fragment	FALSE	canonical	3	41	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTGAGGAAAACTAAAGGTC	6740	False	NA	NA	False	AATAAA	-7	NA	72919514	72923266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_72920609_72922613
ENSMUSG00000089872.11_0	chr1	-	3979	15	FSM	ENSMUSG00000089872.11	ENSMUST00000061611.15	3995	15	15	1	-8	-1	multi-exon	FALSE	canonical	3	29	junction_3	6.52154983457904	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTTCCTCATTTAAT	NA	False	NA	-1	True	AATAAA	-15	NA	190643952	190505076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_190505901_190514731_190514828_190515760_190515844_190530848_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190566202_190566296_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
ENSMUSG00000089872.11_16	chr1	-	5558	12	ISM	ENSMUSG00000089872.11	ENSMUST00000061611.15	3995	15	13	23193	-10	-3	5prime_fragment	FALSE	canonical	3	35	junction_4	5.58036700117193	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAAACGGCTTCCTTTC	NA	False	NA	-5	True	AATAAA	-9	NA	190643954	190528268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190566202_190566296_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
ENSMUSG00000089872.11_21	chr1	-	3888	14	NIC	ENSMUSG00000089872.11	novel	3995	15	NA	NA	-11	-2	combination_of_known_junctions	FALSE	canonical	3	5	junction_7	11.9782840983518	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGCCTTCCTCATTTAA	NA	False	NA	-2	True	AATAAA	-14	NA	190643955	190505077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_190505901_190514731_190514828_190515760_190515844_190530848_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
ENSMUSG00000089872.11_23	chr1	-	3239	10	ISM	ENSMUSG00000089872.11	ENSMUST00000159367.8	4103	15	39961	0	-27193	0	3prime_fragment	FALSE	canonical	3	29	junction_3	7.49485420179558	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTTCCTCATTTAATA	NA	False	NA	0	True	AATAAA	-16	NA	190603974	190505075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_190505901_190514731_190514828_190515760_190515844_190530848_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190566202_190566296_190576683_190576800_190603788
ENSMUSG00000089872.11_28	chr1	-	1607	1	Genic_Genomic	ENSMUSG00000089872.11	novel	NA	NA	NA	NA	12790	2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGGCTTCCTTTCATACT	NA	False	NA	0	True	AATAAA	-14	NA	190529870	190528263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_-_190528300_190529900
ENSMUSG00000089872.11_4	chr1	-	2293	5	ISM	ENSMUSG00000089872.11	ENSMUST00000160889.8	2694	6	33823	2	10250	-2	3prime_fragment	FALSE	canonical	3	29	junction_3	7.44983221287567	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGCCTTCCTCATTTAA	NA	False	NA	-2	True	AATAAA	-14	NA	190532410	190505077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_190505901_190514731_190514828_190515760_190515844_190530848_190530939_190531209
ENSMUSG00000089876.4_0	chr11	-	1173	1	Genic_Genomic	ENSMUSG00000089876.4	novel	NA	NA	NA	NA	850	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAATGGAAAGTGTTTC	480	False	NA	-5	True	ATTAAA	-13	NA	69695600	69694427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_69694400_69695600
ENSMUSG00000089876.4_1	chr11	-	1950	2	FSM	ENSMUSG00000089876.4	ENSMUST00000051025.5	1933	2	-16	-1	-16	1	multi-exon	FALSE	canonical	3	73	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAATGGAAAGTGTTTC	NA	False	NA	-5	True	ATTAAA	-13	NA	69696466	69694427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69695757_69695845
ENSMUSG00000089889.3_1	chr5	+	3396	1	FSM	ENSMUSG00000089889.3	ENSMUST00000198455.2	1643	1	-27	-1726	-27	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAATCAAACATAGTC	NA	False	NA	NA	False	NA	NA	NA	143315035	143318431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143315000_143318400
ENSMUSG00000089911.5_0	chr3	-	2704	12	FSM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	67	11	0	-11	multi-exon	FALSE	canonical	3	876	junction_3	57.2050104723397	1554	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTAAAAAGGTCTTGAT	NA	False	NA	-12	True	AATAAA	-25	NA	116456259	116424823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
ENSMUSG00000089917.8_1	chr2	-	1812	15	FSM	ENSMUSG00000089917.8	ENSMUST00000057816.15	1849	15	28	9	-2	5	multi-exon	FALSE	canonical	3	84	junction_14	14.4936650482413	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAATGATCGTGTGGCAG	4575	False	NA	-8	True	AATAAA	-45	NA	181223773	181210950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ENSMUSG00000089917.8_3	chr2	-	4376	12	NIC	ENSMUSG00000089917.8	novel	1782	14	NA	NA	-1	-4	intron_retention	FALSE	canonical	3	84	junction_11	14.067135370098	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGATCGTGTGGCAGAA	4576	False	NA	-6	True	AATAAA	-16	NA	181223772	181210948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181211184_181211260_181211418_181211488_181211825_181211925_181211989_181212101_181212196_181212292_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ENSMUSG00000089917.8_34	chr2	-	1904	13	NIC	ENSMUSG00000089917.8	novel	1782	14	NA	NA	-4	-4	intron_retention	FALSE	canonical	3	17	junction_6	29.3976567471325	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGATCGTGTGGCAGAA	4573	False	NA	-6	True	AATAAA	-16	NA	181223775	181210948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181211184_181211260_181211418_181211488_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ENSMUSG00000089917.8_5	chr2	-	1919	14	NIC	ENSMUSG00000089917.8	novel	1849	15	NA	NA	-2	-4	intron_retention	FALSE	canonical	3	84	junction_13	13.7819022055146	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGATCGTGTGGCAGAA	4575	False	NA	-6	True	AATAAA	-16	NA	181223773	181210948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_181211184_181211260_181211418_181211488_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ENSMUSG00000089945.14_0	chr4	+	3385	3	NIC	ENSMUSG00000038729.25	novel	7231	5	NA	NA	15452	-3342	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	7	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCTCTTCATGTTGCAG	NA	False	NA	6	True	TATAAA	-18	NA	57757546	57893640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_57757684_57854561_57857038_57892868
ENSMUSG00000089945.14_6	chr4	+	2670	3	FSM	ENSMUSG00000038729.25	ENSMUST00000098064.9	7172	3	2374	2128	2374	-2128	multi-exon	FALSE	canonical	3	16	junction_2	1.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCATTTTTGTTTTTA	1786	False	NA	13	True	ATTAAA	-13	NA	57856532	57894854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_57857038_57883023_57883203_57892868
ENSMUSG00000089945.14_7	chr4	+	3692	2	FSM	ENSMUSG00000038729.25	ENSMUST00000102902.4	6993	2	1173	2128	1173	-2128	multi-exon	FALSE	canonical	3	18	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCATTTTTGTTTTTA	585	False	NA	13	True	ATTAAA	-13	NA	57855331	57894854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_57857038_57892868
ENSMUSG00000089945.14_8	chr4	+	2175	2	ISM	ENSMUSG00000038729.25	ENSMUST00000098064.9	7172	3	28862	2121	28862	-2121	3prime_fragment	FALSE	canonical	3	16	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGTTTTTATGTTATT	5536	False	NA	20	True	ATTAAA	-20	NA	57883020	57894861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_57883203_57892868
ENSMUSG00000089945.14_9	chr4	+	2516	1	ISM	ENSMUSG00000089945.14	ENSMUST00000098066.9	7576	11	326268	20	256624	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTCAACGTGTATAGTG	277	False	NA	7	True	NA	NA	NA	57894446	57896962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_57894400_57897000
ENSMUSG00000089951.9_6	chr2	+	1210	3	FSM	ENSMUSG00000089951.9	ENSMUST00000127687.8	1127	3	-23	-60	-23	60	multi-exon	FALSE	canonical	3	22	junction_2	45	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATGTGAGCCAGATAAT	NA	False	NA	NA	False	NA	NA	NA	176115430	176124939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_176115528_176123621_176123749_176123953
ENSMUSG00000089996.7_1	chrX	-	428	3	FSM	ENSMUSG00000089996.7	ENSMUST00000069803.5	450	3	19	3	19	-3	multi-exon	FALSE	canonical	3	182	junction_2	19	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGGTGTGTAACTTCCT	NA	False	NA	NA	False	ATTAAA	-16	NA	135858755	135856016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_135856232_135857483_135857589_135858647
ENSMUSG00000089997.3_1	chr6	-	3620	16	FSM	ENSMUSG00000089997.3	ENSMUST00000238521.2	3678	16	52	6	52	-6	multi-exon	TRUE	canonical	1	1	junction_1	8.63069457743054	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCAAACTGTTCTGTGT	NA	False	NA	NA	False	AATACA	-11	NA	87699731	87652580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_87652879_87656808_87656966_87657046_87657254_87658085_87658251_87667529_87667828_87671707_87671903_87675036_87675942_87677280_87677466_87684223_87684377_87689127_87689250_87690283_87690357_87691104_87691249_87694858_87695064_87695769_87695958_87698819_87699089_87699675
ENSMUSG00000089997.3_4	chr6	-	1165	7	ISM	ENSMUSG00000089997.3	ENSMUST00000238521.2	3678	16	62	36435	62	-36435	5prime_fragment	FALSE	canonical	3	8	junction_6	5.95585612840188	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCACTTGTCCATCGAC	NA	False	NA	NA	False	ATTAAA	-14	NA	87699721	87689009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_87689250_87690283_87690357_87691104_87691249_87694858_87695064_87695769_87695958_87698819_87699089_87699675
ENSMUSG00000089998.3_0	chr3	-	3756	1	FSM	ENSMUSG00000089998.3	ENSMUST00000160110.2	4046	1	291	-1	291	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAACTTTTTCTCTTCATG	NA	False	NA	NA	False	AATAAA	-13	NA	103875606	103871850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_103871800_103875600
ENSMUSG00000090000.3_0	chr18	+	1368	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	29	5	1	2	multi-exon	FALSE	canonical	3	1641	junction_2	78	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAAGCGTCTGATTTAT	NA	False	NA	10	True	AATAAA	-12	NA	77017741	77029303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_77017913_77027263_77027366_77028208
ENSMUSG00000090000.3_1	chr18	+	1504	4	FSM	ENSMUSG00000090000.3	ENSMUST00000136800.2	1503	4	1	-2	1	2	multi-exon	FALSE	canonical	3	14	junction_2	763.929461548789	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAAGCGTCTGATTTAT	NA	False	NA	10	True	AATAAA	-12	NA	77017741	77029303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_77017913_77018319_77018456_77027263_77027366_77028208
ENSMUSG00000090013.2_1	chr6	-	1693	2	FSM	ENSMUSG00000090013.2	ENSMUST00000159767.2	652	2	-3	-1038	-3	1038	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTCTGGGTCTTGTCTCA	NA	False	NA	NA	False	AATAAA	-10	NA	89163010	89160615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_89162143_89162844
ENSMUSG00000090015.9_2	chr5	+	2312	5	NNC	ENSMUSG00000090015.9	novel	2417	4	NA	NA	273	252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	73.5369804928106	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAAAAAATGA	NA	False	NA	NA	False	NA	NA	NA	110071538	110092054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_110071633_110088291_110088419_110088605_110088667_110089940_110090072_110090155
ENSMUSG00000090015.9_23	chr5	+	3280	1	Genic_Genomic	ENSMUSG00000090015.9	novel	NA	NA	NA	NA	1903	1672	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTGTGCTCAGCAATTA	NA	False	NA	8	True	ATTAAA	-20	NA	110090194	110093474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_+_110090200_110093500
ENSMUSG00000090015.9_3	chr5	+	2160	4	FSM	ENSMUSG00000090015.9	ENSMUST00000112544.8	2417	4	256	1	256	-1	multi-exon	FALSE	canonical	3	75	junction_1	50.6315667894601	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCCTTGGTCATGCTAT	NA	False	NA	NA	False	NA	NA	NA	110071521	110091801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110071633_110088291_110088419_110088605_110088667_110089940
ENSMUSG00000090015.9_4	chr5	+	2213	6	NNC	ENSMUSG00000090015.9	novel	2417	4	NA	NA	250	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	79.9714949216282	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	110071515	110091796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_110071633_110076627_110076764_110088291_110088419_110088605_110088667_110089940_110090072_110090155
ENSMUSG00000090031.3_0	chr1	-	4694	1	FSM	ENSMUSG00000090031.3	ENSMUST00000191825.2	5428	1	733	1	30	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCCTGAAATCATTTTA	NA	False	NA	NA	False	AATAAA	-17	NA	6284784	6280090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_6280100_6284800
ENSMUSG00000090035.4_0	chr10	+	5041	1	FSM	ENSMUSG00000090035.4	ENSMUST00000161240.4	5089	1	32	16	32	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTGCAAACCAATTCT	NA	False	NA	0	True	AATAAA	-14	NA	98944052	98949093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_98944100_98949100
ENSMUSG00000090083.12_0	chr17	+	1951	8	FSM	ENSMUSG00000090083.12	ENSMUST00000024817.15	5404	8	112	3341	12	1	multi-exon	FALSE	canonical	3	261	junction_5	10.0387006232919	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCTCAGCTGGGCTTCG	NA	False	NA	17	True	AATAAA	-16	NA	29833875	29860624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29834053_29840482_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
ENSMUSG00000090083.12_1	chr17	+	1846	9	FSM	ENSMUSG00000090083.12	ENSMUST00000234362.2	1780	9	-65	-1	13	1	multi-exon	FALSE	canonical	2	15	junction_3	87.2496418330757	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCTCAGCTGGGCTTCG	NA	False	NA	17	True	AATAAA	-16	NA	29833876	29860624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29834053_29840482_29840612_29845479_29845817_29845920_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
ENSMUSG00000090083.12_14	chr17	+	1424	6	ISM	ENSMUSG00000090083.12	ENSMUST00000172485.8	2042	8	11873	-63	-1909	1	3prime_fragment	FALSE	canonical	3	261	junction_3	9.32952303175248	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCTCAGCTGGGCTTCG	3524	False	NA	17	True	AATAAA	-16	NA	29845700	29860624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
ENSMUSG00000090086.8_8	chr5	-	4389	2	FSM	ENSMUSG00000090086.8	ENSMUST00000160099.2	1017	2	374	-3746	374	-2	multi-exon	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGTGAGTTGCTGAACA	NA	False	NA	-1	True	AATAAA	-18	NA	123277978	123271787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123276130_123277931
ENSMUSG00000090093.9_1	chr2	-	4939	4	FSM	ENSMUSG00000090093.9	ENSMUST00000109060.8	1911	4	-15	-3013	-15	2378	multi-exon	FALSE	canonical	3	26	junction_1	19.3964487013015	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	174983820	174968907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_174973563_174974721_174974783_174974988_174975116_174983724
ENSMUSG00000090093.9_2	chr2	-	4878	3	NIC	ENSMUSG00000090093.9	novel	1911	4	NA	NA	-16	2377	intron_retention	FALSE	canonical	3	23	junction_1	23	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	174983821	174968908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_174973563_174974988_174975116_174983724
ENSMUSG00000090093.9_3	chr2	-	1328	3	FSM	ENSMUSG00000090093.9	ENSMUST00000109059.8	703	3	-29	-596	-16	596	multi-exon	FALSE	canonical	3	30	junction_1	19.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTAGATTGCTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	174983821	174973678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_174974783_174974988_174975116_174983724
ENSMUSG00000090093.9_8	chr2	-	444	3	Fusion	ENSMUSG00000078902.4_ENSMUSG00000090093.9	novel	703	3	NA	NA	11	141	multi-exon	FALSE	canonical	3	11	junction_2	9.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCAGATATGTAATTATT	NA	False	NA	NA	False	NA	NA	NA	175017653	174974576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_-_174974783_174974988_174975116_175017542
ENSMUSG00000090098.8_0	chr6	+	5433	16	Fusion	ENSMUSG00000063810.8_ENSMUSG00000090098.8	novel	2290	9	NA	NA	-16834	0	multi-exon	FALSE	canonical	3	3	junction_11	13.4669966956259	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGCTTAGTCCCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	85599610	85781039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr6_+_85600184_85601565_85601700_85604900_85606697_85618300_85618531_85620139_85620266_85628244_85628401_85633376_85633512_85751381_85751472_85755981_85757136_85773111_85773230_85774373_85774578_85774856_85775099_85775593_85775748_85776440_85776505_85779959_85780060_85780882
ENSMUSG00000090098.8_11	chr6	+	3401	13	Fusion	ENSMUSG00000063810.8_ENSMUSG00000090098.8	novel	9986	23	NA	NA	-10308	1	multi-exon	FALSE	canonical	0	0	junction_5	16.8940735828344	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCAGCTTAGTCCCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	85606136	85781040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr6_+_85606697_85618300_85618531_85620139_85620266_85628244_85628401_85633376_85633512_85755981_85757136_85773111_85773230_85774373_85774578_85774856_85775099_85775593_85775748_85776440_85776505_85779959_85780060_85780882
ENSMUSG00000090098.8_3	chr6	+	4067	14	Fusion	ENSMUSG00000063810.8_ENSMUSG00000090098.8	novel	2290	9	NA	NA	-10885	0	multi-exon	FALSE	canonical	3	3	junction_9	13.3350097565431	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGCTTAGTCCCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	85605559	85781039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr6_+_85606697_85618300_85618531_85620139_85620266_85628244_85628401_85633376_85633512_85751381_85751472_85755981_85757136_85773111_85773230_85774373_85774578_85774856_85775099_85775593_85775748_85776440_85776505_85779959_85780060_85780882
ENSMUSG00000090098.8_6	chr6	+	1616	8	ISM	ENSMUSG00000090098.8	ENSMUST00000161983.8	2290	9	5184	0	5184	0	3prime_fragment	FALSE	canonical	3	3	junction_3	15.6921922610954	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGCTTAGTCCCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	85756558	85781039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_85757136_85773111_85773230_85774373_85774578_85774856_85775099_85775593_85775748_85776440_85776505_85779959_85780060_85780882
ENSMUSG00000090100.8_0	chr2	-	5203	15	FSM	ENSMUSG00000090100.8	ENSMUST00000057135.14	11066	15	-32	5895	-3	-5895	multi-exon	FALSE	canonical	3	11	junction_14	10.4060422008425	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAGTTTTCTTTCAATG	NA	False	NA	NA	False	AATAAA	-8	NA	120680919	120569191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120570676_120575499_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120680536
ENSMUSG00000090100.8_1	chr2	-	8939	3	ISM	ENSMUSG00000090100.8	ENSMUST00000057135.14	11066	15	101685	-2	101643	2	3prime_fragment	FALSE	canonical	3	15	junction_1	7.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGCTATTTGTGTGATG	NA	False	NA	5	True	AATAAA	-23	NA	120579202	120563294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120570676_120575499_120576771_120578915
ENSMUSG00000090100.8_14	chr2	-	1835	12	ISM	ENSMUSG00000090100.8	ENSMUST00000057135.14	11066	15	150	17264	108	154	5prime_fragment	FALSE	canonical	3	11	junction_11	10.2731295174667	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCATTGAGTTTCCATTT	NA	False	NA	NA	False	AATAAA	-23	NA	120680737	120580560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120680536
ENSMUSG00000090100.8_15	chr2	-	2031	13	ISM	ENSMUSG00000090100.8	ENSMUST00000143051.8	3093	15	10	4411	10	152	5prime_fragment	FALSE	canonical	3	12	junction_11	10.6366765904059	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACACCATTGAGTTTCCAT	NA	False	NA	NA	False	AATAAA	-21	NA	120680861	120580562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120655722_120655797_120680536
ENSMUSG00000090100.8_17	chr2	-	11257	17	NIC	ENSMUSG00000090100.8	novel	11152	16	NA	NA	3	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_15	13.9440847673843	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAACTTTAGTGCTATTTG	NA	False	NA	-2	True	AATAAA	-16	NA	120680913	120563301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_120570676_120575499_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120655722_120655797_120667645_120667742_120680536
ENSMUSG00000090100.8_2	chr2	-	3458	1	ISM	ENSMUSG00000090100.8	ENSMUST00000057135.14	11066	15	114130	3	114088	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTTAGTGCTATTTGTG	1356	False	NA	0	True	AATAAA	-18	NA	120566757	120563299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120563300_120566800
ENSMUSG00000090100.8_24	chr2	-	6250	16	NIC	ENSMUSG00000090100.8	novel	11152	16	NA	NA	4	3020	combination_of_known_junctions	FALSE	canonical	1	1	junction_14	13.9612161202223	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCCCATTCTATCACT	NA	False	NA	NA	False	AATAAA	-18	NA	120680912	120573131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120655722_120655797_120667645_120667742_120680536
ENSMUSG00000090100.8_4	chr2	-	6083	16	FSM	ENSMUSG00000090100.8	ENSMUST00000085840.11	11152	16	12	5057	0	-5057	multi-exon	FALSE	canonical	3	12	junction_14	10.6048207067457	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAAATCCATTTTTTTCT	NA	False	NA	NA	False	TATAAA	-31	NA	120680887	120568353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120570676_120575499_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120655722_120655797_120680536
ENSMUSG00000090100.8_7	chr2	-	4008	15	FSM	ENSMUSG00000090100.8	ENSMUST00000143051.8	3093	15	-47	-868	-2	868	multi-exon	FALSE	canonical	3	12	junction_13	10.0369216355597	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCATGTTAAGTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	120680918	120575283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120655722_120655797_120680536
ENSMUSG00000090100.8_8	chr2	-	3929	14	ISM	ENSMUSG00000090100.8	ENSMUST00000057135.14	11066	15	-31	11992	-2	863	5prime_fragment	FALSE	canonical	3	11	junction_13	9.62676249904493	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTACTCATGTTAAGTGT	NA	False	NA	NA	False	NA	NA	NA	120680918	120575288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120680536
ENSMUSG00000090100.8_9	chr2	-	4043	15	NIC	ENSMUSG00000090100.8	novel	3093	15	NA	NA	-11	872	combination_of_known_splicesites	FALSE	canonical	1	2	junction_14	13.3510299228187	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTAAGTGTCCTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	120680927	120575279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120667645_120667742_120680536
ENSMUSG00000090101.2_0	chr17	-	117	2	FSM	ENSMUSG00000090101.2	ENSMUST00000161706.2	183	2	64	2	64	-2	multi-exon	FALSE	canonical	3	215	junction_1	0	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTATCGTATGTTGGTGT	4365	False	NA	-10	True	AATAAA	-13	NA	24938875	24938506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24938582_24938833
ENSMUSG00000090110.9_0	chrX	-	722	3	FSM	ENSMUSG00000090110.9	ENSMUST00000033543.14	992	3	267	3	267	-3	multi-exon	FALSE	canonical	3	61	junction_2	10	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTGGTTTGTTACTA	NA	False	NA	NA	False	AATAAA	-14	NA	74459904	74448454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_74448825_74453151_74453220_74459620
ENSMUSG00000090110.9_1	chrX	-	673	4	FSM	ENSMUSG00000090110.9	ENSMUST00000149863.3	507	4	11	-177	-8	-3	multi-exon	FALSE	canonical	3	61	junction_2	9.20144916122817	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTGGTTTGTTACTA	NA	False	NA	NA	False	AATAAA	-14	NA	74460179	74448454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_74448825_74453151_74453220_74459620_74459820_74460143
ENSMUSG00000090112.9_1	chr10	+	6874	30	FSM	ENSMUSG00000090112.9	ENSMUST00000044053.13	9271	30	67	2330	24	968	multi-exon	FALSE	canonical	3	69	junction_26	12.375515699268	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGAAATTATGGATTGT	NA	False	NA	NA	False	AATAAA	-12	NA	11025240	11091009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_11025331_11027356_11028013_11030402_11030533_11032763_11032983_11035261_11035341_11036210_11036362_11037862_11037972_11038552_11038807_11040088_11040740_11042229_11042482_11043577_11043657_11045722_11045887_11045990_11046248_11047616_11047739_11054477_11054567_11057255_11057349_11059517_11059626_11061063_11061207_11062124_11062299_11062586_11062650_11063683_11063910_11065374_11065519_11066729_11066832_11068229_11068302_11069924_11070114_11080924_11081018_11082012_11082100_11082840_11083020_11088065_11088147_11089191
ENSMUSG00000090112.9_2	chr10	+	4650	21	ISM	ENSMUSG00000090112.9	ENSMUST00000054814.14	7225	28	-32	20851	19	551	5prime_fragment	TRUE	canonical	3	71	junction_8	10.2640148090306	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAGATACCTTGTCTAA	NA	False	NA	NA	False	AATAAA	-12	NA	11025235	11064445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_11025331_11027356_11028013_11030402_11030533_11032763_11032983_11035261_11035341_11036210_11036362_11037862_11037972_11038552_11038807_11040088_11040740_11042229_11042482_11043577_11043657_11045722_11045887_11045990_11046248_11047616_11047739_11054477_11054567_11057255_11057349_11059517_11059626_11061063_11061207_11062124_11062299_11062586_11062650_11063683
ENSMUSG00000090112.9_20	chr10	+	6786	29	ISM	ENSMUSG00000090112.9	ENSMUST00000044053.13	9271	30	2181	2330	2087	968	3prime_fragment	FALSE	canonical	3	69	junction_25	12.544004177946	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGAAATTATGGATTGT	NA	False	NA	NA	False	AATAAA	-12	NA	11027354	11091009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_11028013_11030402_11030533_11032763_11032983_11035261_11035341_11036210_11036362_11037862_11037972_11038552_11038807_11040088_11040740_11042229_11042482_11043577_11043657_11045722_11045887_11045990_11046248_11047616_11047739_11054477_11054567_11057255_11057349_11059517_11059626_11061063_11061207_11062124_11062299_11062586_11062650_11063683_11063910_11065374_11065519_11066729_11066832_11068229_11068302_11069924_11070114_11080924_11081018_11082012_11082100_11082840_11083020_11088065_11088147_11089191
ENSMUSG00000090112.9_40	chr10	+	3139	1	ISM	ENSMUSG00000090112.9	ENSMUST00000044053.13	9271	30	65011	16	9422	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTGAGAAACTCAATTTT	NA	False	NA	NA	False	AATAAA	-7	NA	11090184	11093323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_11090200_11093300
ENSMUSG00000090115.8_10	chr17	+	3552	4	ISM	ENSMUSG00000090115.8	ENSMUST00000152724.2	1443	5	1993	-2805	1412	2805	3prime_fragment	FALSE	canonical	3	25	junction_3	41.1528316833187	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATTGTGGTTTGCATG	NA	False	NA	20	True	CATAAA	-15	NA	47985637	47994786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_47985846_47989768_47989878_47990588_47990644_47991606
ENSMUSG00000090115.8_11	chr17	+	2283	1	Genic_Genomic	ENSMUSG00000090115.8	novel	NA	NA	NA	NA	11156	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTGCAGGCTTTATT	NA	False	NA	13	True	AATAAA	-10	NA	47995381	47997664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_+_47995400_47997700
ENSMUSG00000090115.8_12	chr17	+	5344	6	ISM	ENSMUSG00000090115.8	ENSMUST00000024779.15	8252	7	19267	2675	336	-2675	3prime_fragment	FALSE	canonical	3	43	junction_1	37.8861452248708	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCACTGTTGTTCACTG	NA	False	NA	0	True	NA	NA	NA	47960881	47994988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_47960949_47982968_47984344_47985640_47985846_47989768_47989878_47990588_47990795_47991606
ENSMUSG00000090115.8_2	chr17	+	3371	7	FSM	ENSMUSG00000090115.8	ENSMUST00000024779.15	8252	7	-801	5682	-801	0	multi-exon	FALSE	canonical	2	4	junction_1	48.3861780080037	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCTTCTATGAAGATCC	NA	False	NA	6	True	TATAAA	-3	NA	47940813	47991981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47941841_47960874_47960949_47982968_47984344_47985640_47985846_47989768_47989878_47990588_47990795_47991606
ENSMUSG00000090115.8_3	chr17	+	1496	5	FSM	ENSMUSG00000090115.8	ENSMUST00000152724.2	1443	5	-43	-10	-43	10	multi-exon	FALSE	canonical	3	25	junction_4	46.8794997840207	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAGATCCTTTTGTCAGT	NA	False	NA	16	True	TATAAA	-13	NA	47983601	47991991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47991606
ENSMUSG00000090115.8_4	chr17	+	1641	6	NNC	ENSMUSG00000090115.8	novel	8252	7	NA	NA	-118	11	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	46.9143901164664	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATCCTTTTGTCAGTT	NA	False	NA	17	True	TATAAA	-14	NA	47983526	47991992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47990725_47990795_47991606
ENSMUSG00000090115.8_5	chr17	+	1773	1	ISM	ENSMUSG00000090115.8	ENSMUST00000024779.15	8252	7	51604	2672	8993	-2672	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTGTTGTTCACTGCCT	NA	False	NA	3	True	NA	NA	NA	47993218	47994991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_47993200_47995000
ENSMUSG00000090125.4_0	chr4	+	2986	1	FSM	ENSMUSG00000090125.4	ENSMUST00000053491.9	3849	1	847	16	847	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATGTACCCCAGGGCTG	NA	False	NA	12	True	AGTAAA	-18	NA	124551446	124554432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_124551400_124554400
ENSMUSG00000090136.5_0	chr9	+	394	1	FSM	ENSMUSG00000090136.5	ENSMUST00000160052.2	444	1	5	45	5	-45	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTTTTTCCATAACAG	NA	False	NA	NA	False	ATTAAA	-14	NA	37164222	37164616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_37164200_37164600
ENSMUSG00000090137.9_0	chr8	-	492	4	FSM	ENSMUSG00000090137.9	ENSMUST00000125184.8	711	4	214	5	12	-2	multi-exon	FALSE	canonical	3	14257	junction_3	3914.7897346686	3283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAATTGGTGTCTAGAGTG	NA	False	NA	-9	True	AATAAA	-23	NA	70963017	70960917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70962987
ENSMUSG00000090137.9_1	chr8	-	461	3	FSM	ENSMUSG00000090137.9	ENSMUST00000165126.9	387	3	-9	-65	-9	-1	multi-exon	FALSE	canonical	3	22365	junction_1	190	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTGGTGTCTAGAGTGA	NA	False	NA	-8	True	AATAAA	-24	NA	70962282	70960916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70961179_70961945_70962033_70962170
ENSMUSG00000090137.9_2	chr8	-	489	4	FSM	ENSMUSG00000090137.9	ENSMUST00000081940.11	541	4	50	2	12	-2	multi-exon	FALSE	canonical	3	1892	junction_3	9741.86690983247	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAATTGGTGTCTAGAGTG	NA	False	NA	-9	True	AATAAA	-23	NA	70963017	70960917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962987
ENSMUSG00000090137.9_4	chr8	-	679	4	FSM	ENSMUSG00000090137.9	ENSMUST00000129909.8	705	4	21	5	16	-2	multi-exon	FALSE	canonical	0	0	junction_3	10633.6606532694	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAATTGGTGTCTAGAGTG	NA	False	NA	-9	True	AATAAA	-23	NA	70962984	70960917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70962767
ENSMUSG00000090150.11_0	chr9	+	3340	20	FSM	ENSMUSG00000090150.11	ENSMUST00000047799.13	3444	20	25	79	-11	-79	multi-exon	FALSE	canonical	3	30	junction_7	6.62112793865633	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTTTCTTATTGTCA	NA	False	NA	13	True	NA	NA	NA	103940909	104004845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_103941103_103950820_103950921_103953015_103953142_103953528_103953691_103955761_103955927_103958429_103958572_103958896_103959019_103959989_103960097_103961359_103961487_103967456_103967535_103968790_103968930_103972719_103972828_103974552_103974652_103990660_103990728_103991651_103991738_103992476_103992549_103993363_103993519_104000245_104000363_104001216_104001327_104003780
ENSMUSG00000090150.11_3	chr9	+	2506	15	ISM	ENSMUSG00000090150.11	ENSMUST00000047799.13	3444	20	17634	78	-9735	-78	3prime_fragment	FALSE	canonical	3	30	junction_2	7.22700434735823	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTTTCTTATTGTCAT	NA	False	NA	14	True	NA	NA	NA	103958518	104004846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_103958572_103958896_103959019_103959989_103960097_103961359_103961487_103967456_103967535_103968790_103968930_103972719_103972828_103974552_103974652_103990660_103990728_103991651_103991738_103992476_103992549_103993363_103993519_104000245_104000363_104001216_104001327_104003780
ENSMUSG00000090173.9_0	chr11	+	3279	13	FSM	ENSMUSG00000090173.9	ENSMUST00000150989.8	3267	13	-24	12	-24	7	multi-exon	FALSE	canonical	0	0	junction_8	1.80277563773199	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTGAAAACTAAGTGAGT	NA	False	NA	NA	False	NA	NA	NA	62737924	62768276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_62738622_62741397_62741569_62743780_62743982_62744090_62744219_62746111_62746235_62748511_62748622_62750665_62750867_62753455_62753578_62758346_62758496_62759837_62759981_62764196_62764356_62765767_62766016_62767449
ENSMUSG00000090211.4_2	chr17	+	2377	2	Fusion	ENSMUSG00000060417.7_ENSMUSG00000090211.4	novel	2463	3	NA	NA	18	753	multi-exon	FALSE	canonical	0	0	junction_1	0	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGACCTCGGAGGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	13721233	13739284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_+_13721317_13736990
ENSMUSG00000090211.4_4	chr17	+	2453	3	FSM	ENSMUSG00000090211.4	ENSMUST00000160626.4	2463	3	12	-2	12	2	multi-exon	FALSE	canonical	0	0	junction_1	6	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATAGCTTTCCTTTTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	13721227	13731457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_13721317_13722461_13722565_13729196
ENSMUSG00000090211.4_6	chr17	+	1953	3	Fusion	ENSMUSG00000060417.7_ENSMUSG00000090211.4	novel	2463	3	NA	NA	15	753	multi-exon	FALSE	canonical	0	0	junction_1	6	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGACCTCGGAGGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	13721230	13739284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_+_13721317_13736990_13738577_13739003
ENSMUSG00000090213.2_0	chr2	-	2290	6	FSM	ENSMUSG00000090213.2	ENSMUST00000006587.7	2329	6	-8	47	-8	-47	multi-exon	FALSE	canonical	3	221	junction_2	14.6205335059977	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	167503484	167484574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_167486103_167486683_167486897_167487951_167488097_167488887_167488980_167496527_167496648_167503292
ENSMUSG00000090213.2_3	chr2	-	880	1	ISM	ENSMUSG00000090213.2	ENSMUST00000006587.7	2329	6	18022	47	1643	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7404	False	NA	NA	False	NA	NA	NA	167485454	167484574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_167484600_167485500
ENSMUSG00000090235.2_0	chr19	+	2280	3	NNC	ENSMUSG00000090235.2	novel	2327	2	NA	NA	-898	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	1	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCTTTTATTATTATTAT	NA	False	NA	NA	False	AATAAA	-19	NA	42766572	42769893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_42766727_42767671_42767783_42767878
ENSMUSG00000090235.2_4	chr19	+	1357	1	ISM	ENSMUSG00000090235.2	ENSMUST00000159313.2	2327	2	1066	0	988	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCTTTTATTATTATTAT	NA	False	NA	NA	False	AATAAA	-19	NA	42768536	42769893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_42768500_42769900
ENSMUSG00000090247.8_2	chr10	-	522	4	FSM	ENSMUSG00000090247.8	ENSMUST00000026405.10	550	4	28	0	28	0	multi-exon	FALSE	canonical	3	559	junction_1	37.4788829431544	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTGTGTTTGAAGGAG	NA	False	NA	-1	True	AATAAA	-19	NA	128759365	128755782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128755977_128756427_128756561_128758522_128758596_128759243
ENSMUSG00000090247.8_3	chr10	-	726	3	ISM	ENSMUSG00000090247.8	ENSMUST00000026405.10	550	4	471	1	-27	-1	3prime_fragment	FALSE	canonical	3	559	junction_1	44.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGTGTTTGAAGGA	NA	False	NA	-2	True	AATAAA	-18	NA	128758922	128755783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_128755977_128756427_128756561_128758522
ENSMUSG00000090258.8_0	chr12	+	600	4	FSM	ENSMUSG00000090258.8	ENSMUST00000041262.14	676	4	27	49	10	12	multi-exon	FALSE	canonical	3	492	junction_2	1.88561808316413	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTAAAAAAAATAGC	NA	False	NA	-40	True	NA	NA	NA	76812338	76829905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586
ENSMUSG00000090258.8_1	chr12	+	2713	5	NNC	ENSMUSG00000090258.8	novel	676	4	NA	NA	-8	2263	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	214.20317457965	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCCGCTGATTTCTCCT	NA	False	NA	23	True	AATAAA	-14	NA	76812340	76832217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586_76829728_76829924
ENSMUSG00000090264.2_0	chr18	+	5287	2	NIC	ENSMUSG00000090264.2	novel	744	3	NA	NA	-3573	-9	intron_retention	FALSE	canonical	3	211	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36793539	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_36798509_36798643
ENSMUSG00000090266.11_0	chr11	+	874	5	FSM	ENSMUSG00000090266.11	ENSMUST00000106370.10	1276	5	291	111	8	0	multi-exon	FALSE	canonical	3	104	junction_1	13.3603892158874	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAATGGGTATGAAGA	8959	False	NA	17	True	CATAAA	-17	NA	116734394	116740455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116734601_116739079_116739185_116739726_116739965_116740041_116740127_116740215
ENSMUSG00000090266.11_1	chr11	+	1174	4	NIC	ENSMUSG00000090266.11	novel	541	4	NA	NA	-2	-3	intron_retention	FALSE	canonical	3	21	junction_1	51.1490197581754	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAACTCAATGGGTATGA	8949	False	NA	14	True	CATAAA	-14	NA	116734384	116740452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_116734601_116736644_116736772_116739079_116739185_116739726
ENSMUSG00000090266.11_12	chr11	+	5492	2	NIC	ENSMUSG00000090266.11	novel	1785	3	NA	NA	8	-3	intron_retention	FALSE	canonical	3	137	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAACTCAATGGGTATGA	8983	False	NA	14	True	CATAAA	-14	NA	116734418	116740452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_116739185_116739726
ENSMUSG00000090266.11_16	chr11	+	998	6	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	3	-8	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	49.6733328859661	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGAGGAAACTCAATGGG	8954	False	NA	9	True	CATAAA	-9	NA	116734389	116740447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_116734601_116736644_116736772_116739079_116739185_116739726_116739965_116740041_116740127_116740215
ENSMUSG00000090266.11_2	chr11	+	1195	5	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	6	-28	intron_retention	FALSE	canonical	3	38	junction_2	48.2668364407696	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAATTAAACATTCAAA	8981	False	NA	-13	True	NA	NA	NA	116734416	116740538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726_116740127_116740215
ENSMUSG00000090266.11_5	chr11	+	1051	6	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	44.7812460746684	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAATGGGTATGAAGA	8965	False	NA	17	True	CATAAA	-17	NA	116734400	116740455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726_116739965_116740041_116740127_116740215
ENSMUSG00000090266.11_7	chr11	+	571	2	FSM	ENSMUSG00000090266.11	ENSMUST00000128784.2	585	2	1	13	1	-13	multi-exon	FALSE	canonical	3	40	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTTCTTTTTTGAATCA	8952	False	NA	11	True	AATAAA	-16	NA	116734387	116736946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_116734601_116736588
ENSMUSG00000090290.3_0	chr8	-	6393	30	FSM	ENSMUSG00000090290.3	ENSMUST00000170518.3	6383	30	-4	-6	-4	6	multi-exon	FALSE	canonical	3	24	junction_27	8.4550992852775	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATGATTTTATGCTTT	NA	False	NA	-13	True	AATAAA	-27	NA	127201808	127152061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_127153880_127154161_127154299_127154556_127154682_127154813_127155006_127155619_127155792_127157560_127157643_127160586_127160784_127161536_127161624_127163441_127163592_127165541_127165653_127167492_127167614_127170668_127170741_127170873_127171065_127173778_127173968_127174059_127174322_127174951_127175167_127177402_127177565_127178971_127179070_127179528_127179702_127180537_127180635_127182807_127182944_127183215_127183306_127184402_127184500_127185775_127185912_127188076_127188175_127189921_127189975_127193772_127193922_127196757_127196828_127198040_127198139_127200993
ENSMUSG00000090290.3_2	chr8	-	6345	29	NIC	ENSMUSG00000090290.3	novel	6383	30	NA	NA	-26	6	combination_of_known_splicesites	FALSE	canonical	1	2	junction_27	10.8658329883453	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATGATTTTATGCTTT	NA	False	NA	-13	True	AATAAA	-27	NA	127201830	127152061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_127153880_127154161_127154299_127154556_127154682_127154813_127155006_127155619_127155792_127157560_127157643_127160586_127160784_127161536_127161624_127163441_127163592_127165541_127165653_127167492_127167614_127170668_127170741_127170873_127171065_127173778_127173968_127174059_127174322_127174951_127175167_127177402_127177565_127178971_127179070_127179528_127179702_127180537_127180635_127182807_127182944_127183215_127183306_127184402_127184500_127185775_127185912_127188076_127188175_127189921_127189975_127193772_127193922_127198040_127198139_127200993
ENSMUSG00000090290.3_27	chr8	-	2746	17	ISM	ENSMUSG00000090290.3	ENSMUST00000170518.3	6383	30	203	21696	203	-21696	5prime_fragment	FALSE	canonical	3	24	junction_14	6.3118811577849	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTTGTGTGGTCAGTAG	NA	False	NA	NA	False	AATAAA	-20	NA	127201601	127173763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_127173968_127174059_127174322_127174951_127175167_127177402_127177565_127178971_127179070_127179528_127179702_127180537_127180635_127182807_127182944_127183215_127183306_127184402_127184500_127185775_127185912_127188076_127188175_127189921_127189975_127193772_127193922_127196757_127196828_127198040_127198139_127200993
ENSMUSG00000090290.3_6	chr8	-	2731	7	ISM	ENSMUSG00000090290.3	ENSMUST00000170518.3	6383	30	41019	-12	41019	12	3prime_fragment	FALSE	canonical	3	49	junction_2	2.73353657780945	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTATGCTTTTTCTTA	NA	False	NA	-7	True	AATAAA	-33	NA	127160785	127152055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_127153880_127154161_127154299_127154556_127154682_127154813_127155006_127155619_127155792_127157560_127157643_127160586
ENSMUSG00000090290.3_8	chr8	-	1893	2	ISM	ENSMUSG00000090290.3	ENSMUST00000170518.3	6383	30	47570	-8	47570	8	3prime_fragment	FALSE	canonical	3	55	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGATTTTATGCTTTTT	NA	False	NA	-11	True	AATAAA	-29	NA	127154234	127152059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_127153880_127154161
ENSMUSG00000090291.4_0	chr19	-	2042	1	FSM	ENSMUSG00000090291.4	ENSMUST00000171400.4	2103	1	55	6	55	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAATGTGTGTTTCCCAC	NA	False	NA	NA	False	CATAAA	-16	NA	10434782	10432740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_10432700_10434800
ENSMUSG00000090356.3_0	chr16	-	1250	1	FSM	ENSMUSG00000090356.3	ENSMUST00000170665.3	1346	1	60	36	60	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAAGAACAAA	NA	False	NA	NA	False	NA	NA	NA	20972690	20971440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20971400_20972700
ENSMUSG00000090387.2_0	chr12	+	1093	1	ISM	ENSMUSG00000090387.2	ENSMUST00000164804.2	2299	2	1353	4	1353	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACTAAACAAAAAAAAAAAA	1824	False	NA	NA	False	NA	NA	NA	40250007	40251100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_40250000_40251100
ENSMUSG00000090440.3_32	chr14	+	1237	3	NNC	ENSMUSG00000090440.3	novel	1757	5	NA	NA	-37759	-348	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGATCTCTAACTCTTCAC	NA	False	NA	NA	False	AATAAA	-3	NA	41257408	41302914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_41257738_41297159_41297292_41302138
ENSMUSG00000090459.2_2	chr14	-	555	3	NNC	ENSMUSG00000090459.2	novel	391	2	NA	NA	-56	-1	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	9	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAGTCATTGACAAAGTT	NA	False	NA	-14	True	ATTAAA	-16	NA	32016987	32014881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_32015223_32016561_32016674_32016885
ENSMUSG00000090459.2_6	chr14	-	440	2	FSM	ENSMUSG00000090459.2	ENSMUST00000169975.2	391	2	-56	7	-56	-7	multi-exon	FALSE	canonical	3	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATATCAAGTCATTGAC	NA	False	NA	-20	True	ATTAAA	-10	NA	32016987	32014887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_32015223_32016882
ENSMUSG00000090470.3_0	chr9	+	1787	1	FSM	ENSMUSG00000090470.3	ENSMUST00000167951.3	1817	1	27	3	27	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGTGAGTCAAAAATCAT	NA	False	NA	3	True	AATAAA	-16	NA	98746846	98748633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_98746800_98748600
ENSMUSG00000090516.2_0	chr9	-	158	1	FSM	ENSMUSG00000090516.2	ENSMUST00000171632.2	475	1	365	-48	365	48	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAGAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	59379151	59378993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_59379000_59379200
ENSMUSG00000090534.2_0	chr14	+	1466	2	FSM	ENSMUSG00000090534.2	ENSMUST00000164755.2	2322	2	483	373	-165	-373	multi-exon	FALSE	canonical	3	20	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGATAAACTACAAAATTAC	NA	False	NA	NA	False	ATTAAA	-15	NA	118474126	118475798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_118474357_118474562
ENSMUSG00000090553.9_2	chr1	-	467	5	FSM	ENSMUSG00000090553.9	ENSMUST00000166915.8	503	5	27	9	-15	-4	multi-exon	FALSE	canonical	3	3763	junction_3	447.106461035848	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTTACATTGTTTCAT	NA	False	NA	-18	True	AATAAA	-21	NA	133538002	133531617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455_133537483_133537901
ENSMUSG00000090553.9_3	chr1	-	653	4	FSM	ENSMUSG00000090553.9	ENSMUST00000172079.2	653	4	16	-16	16	-4	multi-exon	FALSE	canonical	3	3763	junction_3	471.411356107027	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTTACATTGTTTCAT	NA	False	NA	-18	True	AATAAA	-21	NA	133537769	133531617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455
ENSMUSG00000090602.4_0	chr9	+	1077	1	FSM	ENSMUSG00000090602.4	ENSMUST00000164523.4	852	1	-20	-205	-20	205	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTATGGAATGTTATGATA	NA	False	NA	NA	False	NA	NA	NA	16941320	16942397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_16941300_16942400
ENSMUSG00000090610.4_0	chr10	+	1120	1	FSM	ENSMUSG00000090610.4	ENSMUST00000170703.4	1060	1	-33	-27	-33	27	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGTCTCAATAAATTATTG	NA	False	NA	NA	False	NA	NA	NA	93614488	93615608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_93614500_93615600
ENSMUSG00000090626.10_22	chr9	-	1939	12	NIC	ENSMUSG00000090626.10	novel	2794	12	NA	NA	2	-3	intron_retention	FALSE	canonical	3	21	junction_5	58.5026664646243	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACCTGGTGAAATAAAC	7878	False	NA	-35	True	AATAAA	-11	NA	72399241	72368387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387205_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUSG00000090626.10_4	chr9	-	1274	12	FSM	ENSMUSG00000090626.10	ENSMUST00000184125.8	2794	12	138	1382	-2	1	multi-exon	FALSE	canonical	3	143	junction_11	31.4406169897191	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTGGTGAAATAAACAGAA	7874	False	NA	-31	True	AATAAA	-15	NA	72399245	72368383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUSG00000090626.10_5	chr9	-	1144	11	NIC	ENSMUSG00000090626.10	novel	2794	12	NA	NA	-7	1	combination_of_known_splicesites	FALSE	canonical	3	37	junction_2	56.7235400869868	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTGGTGAAATAAACAGAA	7869	False	NA	-31	True	AATAAA	-15	NA	72399250	72368383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_72368561_72369137_72369273_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUSG00000090626.10_6	chr9	-	3444	11	NIC	ENSMUSG00000090626.10	novel	2794	12	NA	NA	2	1	intron_retention	FALSE	canonical	3	143	junction_10	32.0663374896479	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTGGTGAAATAAACAGAA	7878	False	NA	-31	True	AATAAA	-15	NA	72399241	72368383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUSG00000090626.10_7	chr9	-	3363	10	NIC	ENSMUSG00000090626.10	novel	2794	12	NA	NA	0	1	intron_retention	FALSE	canonical	2	9	junction_5	66.6907363956019	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTGGTGAAATAAACAGAA	7876	False	NA	-31	True	AATAAA	-15	NA	72399243	72368383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72388058_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUSG00000090641.3_2	chr13	-	2954	4	FSM	ENSMUSG00000090641.3	ENSMUST00000167565.3	3968	4	15	999	15	-999	multi-exon	FALSE	canonical	1	1	junction_3	4.10960933531265	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATTTTTTTATTGGATA	NA	False	NA	NA	False	AATAAA	-13	NA	67209219	67187658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67190297_67192821_67192918_67200350_67200478_67209126
ENSMUSG00000090659.10_1	chr13	+	3244	4	FSM	ENSMUSG00000090659.10	ENSMUST00000164936.10	3258	4	10	4	-1	-4	multi-exon	FALSE	canonical	3	27	junction_3	3.39934634239519	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAAATTGATTTTGGTC	NA	False	NA	1	True	NA	NA	NA	67927833	67937193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_67927939_67931908_67932036_67932512_67932609_67934277
ENSMUSG00000090659.10_12	chr13	+	2128	1	FSM	ENSMUSG00000090659.10	ENSMUST00000180507.2	3963	1	990	845	990	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAAATTGATTTTGGTC	NA	False	NA	1	True	NA	NA	NA	67935065	67937193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_67935100_67937200
ENSMUSG00000090659.10_2	chr13	+	3077	4	Fusion	ENSMUSG00000097906.2_ENSMUSG00000090659.10	novel	3258	4	NA	NA	-4	1728	multi-exon	FALSE	canonical	2	7	junction_3	12.7540843131393	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGTTTGTTTCTATTT	NA	False	NA	NA	False	NA	NA	NA	67927830	67961047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr13_+_67927939_67931908_67932036_67932512_67932609_67958301
ENSMUSG00000090659.10_3	chr13	+	3162	5	Fusion	ENSMUSG00000097906.2_ENSMUSG00000090659.10	novel	3258	4	NA	NA	4	1721	multi-exon	FALSE	canonical	1	1	junction_3	15.1657508881031	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGCCTATGTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	67927827	67961040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr13_+_67927939_67931908_67932036_67932512_67932609_67949963_67950053_67958301
ENSMUSG00000090691.4_0	chr14	+	1597	4	NNC	ENSMUSG00000090691.4	novel	2053	7	NA	NA	-148	-9044	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	11.0855260988773	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAAAAAATTGGACAGA	NA	False	NA	NA	False	AATAAA	-31	NA	15579662	15592227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_15579954_15581334_15581449_15584666_15584818_15591186
ENSMUSG00000090700.3_3	chr17	+	1851	11	ISM	ENSMUSG00000090700.3	ENSMUST00000165061.2	1858	12	2669	-228	2669	1	3prime_fragment	FALSE	canonical	1	2	junction_3	2.53968501984006	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGCCTGGCTTTCCTTTA	1923	False	NA	NA	False	AATAAA	-19	NA	32881052	32895889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_32881237_32886789_32886844_32886927_32887056_32888747_32888870_32889978_32890250_32892904_32892972_32893155_32893286_32894468_32894603_32894685_32894751_32894877_32894961_32895276
ENSMUSG00000090714.11_0	chr7	-	1828	4	NNC	ENSMUSG00000090714.11	novel	2272	4	NA	NA	-21	-417	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	12.4988888395018	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTTGTTTTTTATTGT	4938	False	NA	NA	False	NA	NA	NA	10900107	10895717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_10896834_10896917_10897078_10898900_10899373_10900027
ENSMUSG00000090733.7_0	chr3	-	342	4	FSM	ENSMUSG00000090733.7	ENSMUST00000170122.4	345	4	3	0	0	0	multi-exon	TRUE	canonical	3	13930	junction_3	2970.01597451746	1676	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120955	90119977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120916
ENSMUSG00000090744.8_1	chr7	-	2813	4	FSM	ENSMUSG00000090744.8	ENSMUST00000073410.12	1430	4	5	-1388	5	1388	multi-exon	FALSE	canonical	3	131	junction_3	48.9285192909003	258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTAGTCGTTTCTTTTTT	NA	False	NA	-7	True	NA	NA	NA	41210248	41193709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_41196224_41197139_41197201_41197407_41197535_41210137
ENSMUSG00000090788.3_1	chr14	+	1722	8	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-73731	-2	at_least_one_novel_splicesite	TRUE	canonical	2	10	junction_5	49.2250143810678	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTAAGAAAC	NA	False	NA	NA	False	AATAAA	-13	NA	43169939	43251479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_43170061_43170454_43170526_43173424_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
ENSMUSG00000090788.3_2	chr14	+	2065	8	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-73728	4	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_5	48.8128454154336	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTCTAAGAAACTTCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	43169942	43251485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_43170061_43170454_43170526_43173084_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
ENSMUSG00000090788.3_5	chr14	+	1695	6	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-70413	-4	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_3	9.19565114605812	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACTCTTCACTCTAAGAA	NA	False	NA	NA	False	AATAAA	-11	NA	43173257	43251477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
ENSMUSG00000090841.3_0	chr10	-	639	6	FSM	ENSMUSG00000090841.3	ENSMUST00000164181.2	665	6	22	4	1	-1	multi-exon	FALSE	canonical	3	2189	junction_3	223.361948415571	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTTGGTTCTTTCTTTC	8246	False	NA	-8	True	AATAAA	-17	NA	128329722	128326732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ENSMUSG00000090841.3_2	chr10	-	594	5	FSM	ENSMUSG00000090841.3	ENSMUST00000219554.2	790	5	192	4	7	-2	multi-exon	FALSE	canonical	3	2189	junction_3	229.335998046534	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTTTTGGTTCTTTCTTT	8532	False	NA	-9	True	AATAAA	-16	NA	128329436	128326733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328615_128329407
ENSMUSG00000090854.10_0	chr10	+	1216	2	FSM	ENSMUSG00000090854.10	ENSMUST00000181615.8	1258	2	-1	43	-1	-43	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTGTGTAGAAATAAACAA	NA	False	NA	NA	False	AATAAA	-2	NA	104029901	104032340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_104030009_104031231
ENSMUSG00000090854.10_1	chr10	+	1186	2	FSM	ENSMUSG00000090854.10	ENSMUST00000181036.2	1197	2	-24	35	-24	-35	multi-exon	FALSE	canonical	3	5	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATAAACAAGTATTCTG	NA	False	NA	NA	False	AATAAA	-10	NA	104030293	104032348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_104030363_104031231
ENSMUSG00000090862.4_1	chr7	-	469	5	FSM	ENSMUSG00000090862.4	ENSMUST00000206963.2	653	5	181	3	168	-3	multi-exon	FALSE	canonical	3	42	junction_1	4507.63410782197	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAACTTGGTGTTTTGTGG	NA	False	NA	-10	True	AATAAA	-10	NA	115933184	115930749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134
ENSMUSG00000090862.4_14	chr7	-	2483	2	FSM	ENSMUSG00000090862.4	ENSMUST00000206748.2	958	2	3	-1528	-2	0	multi-exon	FALSE	canonical	3	11265	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933354	115930746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_115933010_115933134
ENSMUSG00000090862.4_2	chr7	-	556	6	FSM	ENSMUSG00000090862.4	ENSMUST00000170953.3	589	6	25	8	-4	-1	multi-exon	FALSE	canonical	3	42	junction_1	4075.24362952695	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTTGGTGTTTTGTGGTT	NA	False	NA	-8	True	AATAAA	-12	NA	115933405	115930747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_8	chr7	-	2359	3	FSM	ENSMUSG00000090862.4	ENSMUST00000205548.2	2363	3	2	2	0	-2	multi-exon	FALSE	canonical	3	9102	junction_2	1081.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAACTTGGTGTTTTGTGGT	NA	False	NA	-9	True	AATAAA	-11	NA	115933368	115930748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_115933010_115933134_115933184_115933319
ENSMUSG00000090877.4_0	chr17	-	2798	1	FSM	ENSMUSG00000090877.4	ENSMUST00000172753.2	2803	1	5	0	5	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATATTTTGTCTGTTTG	8776	False	NA	NA	False	AATAAA	-8	NA	35178209	35175411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35175400_35178200
ENSMUSG00000090919.7_0	chr3	-	4406	2	FSM	ENSMUSG00000090919.7	ENSMUST00000166505.7	5218	2	-9	821	-9	-821	multi-exon	FALSE	canonical	2	3	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGAAATGCCTTCAGCC	NA	False	NA	NA	False	AATAAA	-14	NA	46402385	46397452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_46401725_46402251
ENSMUSG00000090919.7_1	chr3	-	4995	1	NIC	ENSMUSG00000090919.7	novel	5218	2	NA	NA	116	-613	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATGATGGATATGTCTGC	NA	False	NA	NA	False	ACTAAA	-15	NA	46402239	46397244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_46397200_46402200
ENSMUSG00000090925.3_0	chr9	-	155	1	ISM	ENSMUSG00000090925.3	ENSMUST00000188595.2	2307	2	6920	5	1606	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTTTGTAGCTTTTA	NA	False	NA	NA	False	NA	NA	NA	22118236	22118081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_22118100_22118200
ENSMUSG00000090935.11_0	chr12	-	3405	4	FSM	ENSMUSG00000090935.11	ENSMUST00000163402.8	4655	4	35	1215	4	-14	multi-exon	FALSE	canonical	3	147	junction_1	30.6920185064456	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACTGTTTGCTTCAGTT	NA	False	NA	-20	True	CATAAA	-44	NA	81579650	81545929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_81548941_81551317_81551414_81557602_81557740_81579489
ENSMUSG00000090935.11_1	chr12	-	3271	3	FSM	ENSMUSG00000090935.11	ENSMUST00000164431.2	3305	3	17	17	-2	-17	multi-exon	FALSE	canonical	3	34	junction_2	56.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGACACTGTTTGCTTCA	NA	False	NA	-23	True	CATAAA	-41	NA	81579656	81545932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_81548941_81551317_81551414_81579489
ENSMUSG00000090935.11_2	chr12	-	2403	1	ISM	ENSMUSG00000090935.11	ENSMUST00000163402.8	4655	4	31355	1213	3406	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTTTGCTTCAGTTGT	NA	False	NA	-18	True	NA	NA	NA	81548330	81545927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_81545900_81548300
ENSMUSG00000090946.4_0	chr12	+	1667	1	FSM	ENSMUSG00000090946.4	ENSMUST00000172332.4	4240	1	90	2483	90	-2483	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCTTGTGATAAAAATTG	NA	False	NA	NA	False	AATAAA	-21	NA	32428792	32430459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_32428800_32430500
ENSMUSG00000090952.3_0	chr17	+	920	2	FSM	ENSMUSG00000090952.3	ENSMUST00000170103.3	925	2	-4	9	-4	-9	multi-exon	FALSE	canonical	3	20	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTTACCTCTCTGAT	3473	False	NA	10	True	NA	NA	NA	33978961	33980835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33979562_33980515
ENSMUSG00000090952.3_1	chr17	+	179	1	ISM	ENSMUSG00000090952.3	ENSMUST00000170103.3	925	2	1688	12	1688	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAAAATTTACCTCTCT	5165	False	NA	7	True	NA	NA	NA	33980653	33980832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33980700_33980800
ENSMUSG00000090963.3_1	chr5	-	2443	4	NNC	ENSMUSG00000090963.3	novel	1776	4	NA	NA	-11557	594	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	6.94422221866655	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGTTGTCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	110205909	110193410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_110195551_110196887_110196949_110197131_110197259_110205794
ENSMUSG00000090996.2_2	chr2	+	1657	8	NIC	ENSMUSG00000090996.2	novel	1369	6	NA	NA	74	-3	intron_retention	FALSE	canonical	0	0	junction_5	121.639648477101	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCACTCATTTCACCTCA	NA	False	NA	NA	False	AATAAA	-8	NA	164302960	164332677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_164303041_164303212_164303450_164305220_164305289_164309067_164309248_164314057_164314243_164330161_164330309_164330487_164330626_164332055
ENSMUSG00000091007.2_0	chr12	-	239	1	FSM	ENSMUSG00000091007.2	ENSMUST00000171007.2	940	1	859	-158	859	158	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36431321	36431082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_36431100_36431300
ENSMUSG00000091080.3_0	chr9	+	1263	1	FSM	ENSMUSG00000091080.3	ENSMUST00000170349.3	883	1	-75	-305	-75	305	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAATGTTGCTGTCTGT	NA	False	NA	NA	False	TATAAA	-13	NA	98724480	98725743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_98724500_98725700
ENSMUSG00000091110.2_29	chr14	+	4669	4	NIC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-2518	-338	intron_retention	TRUE	canonical	3	3	junction_2	9.2736184954957	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	40998243	41010434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_41001810_41002809_41002942_41003619_41003802_41009645
ENSMUSG00000091110.2_33	chr14	+	3698	3	NIC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-1731	-340	intron_retention	FALSE	canonical	3	6	junction_1	4.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTCTTCACTCTTAAGA	NA	False	NA	NA	False	AATAAA	-11	NA	40999030	41010432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_41001810_41002809_41002942_41009645
ENSMUSG00000091119.3_1	chr15	-	940	9	FSM	ENSMUSG00000091119.3	ENSMUST00000165386.2	798	9	-16	-126	-16	126	multi-exon	FALSE	canonical	2	12	junction_4	8.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAATTGCATTTATTTTG	8080	False	NA	NA	False	AATAAA	-20	NA	3333024	3309982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_3310232_3310504_3310589_3312299_3312428_3319606_3319710_3321861_3321927_3323334_3323404_3327582_3327689_3330586_3330676_3332977
ENSMUSG00000091119.3_2	chr15	-	706	6	NIC	ENSMUSG00000091119.3	novel	798	9	NA	NA	-20	125	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	10.2878569196893	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAATTGCATTTATTTT	8076	False	NA	NA	False	AATAAA	-19	NA	3333028	3309983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_3310232_3310504_3310589_3312299_3312428_3327582_3327689_3330586_3330676_3332977
ENSMUSG00000091133.2_0	chr13	-	977	1	ISM	ENSMUSG00000091133.2	ENSMUST00000168625.2	2877	2	3427	0	3427	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGGTCTTATCTTTAACT	NA	False	NA	NA	False	AATAAA	-16	NA	69759593	69758616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_69758600_69759600
ENSMUSG00000091183.6_0	chr13	-	2644	4	FSM	ENSMUSG00000091183.6	ENSMUST00000201047.4	3279	4	16	619	-8	-619	multi-exon	TRUE	canonical	3	25	junction_3	2.05480466765633	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGTGTGTGGACCAGT	NA	False	NA	0	True	NA	NA	NA	62933606	62920632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62922977_62924530_62924592_62924776_62924904_62933494
ENSMUSG00000091183.6_2	chr13	-	3497	1	Genic_Genomic	ENSMUSG00000091183.6	novel	NA	NA	NA	NA	2110	717	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAACAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	62922793	62919296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_62919300_62922800
ENSMUSG00000091228.2_1	chr11	-	618	4	FSM	ENSMUSG00000020857.12	ENSMUST00000072566.5	734	4	117	-1	117	1	multi-exon	FALSE	canonical	3	6715	junction_3	620.302256072706	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGCAGTGTTCAGTACT	NA	False	NA	-30	True	NA	NA	NA	93846492	93840641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320
ENSMUSG00000091228.2_2	chr11	-	314	2	ISM	ENSMUSG00000020857.12	ENSMUST00000072566.5	734	4	3801	-1	3801	1	3prime_fragment	FALSE	canonical	3	6886	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGCAGTGTTCAGTACT	NA	False	NA	-30	True	NA	NA	NA	93842808	93840641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_93840873_93842725
ENSMUSG00000091228.2_4	chr11	-	4864	8	NIC	ENSMUSG00000091228.2	novel	991	8	NA	NA	21	5	intron_retention	FALSE	canonical	3	3315	junction_7	1666.77626034235	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGTGTTCAGTACTCA	634	False	NA	-28	True	NA	NA	NA	93859098	93840639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
ENSMUSG00000091228.2_5	chr11	-	407	3	ISM	ENSMUSG00000020857.12	ENSMUST00000072566.5	734	4	2921	-1	2921	1	3prime_fragment	FALSE	canonical	3	6886	junction_1	611	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGCAGTGTTCAGTACT	NA	False	NA	-30	True	NA	NA	NA	93843688	93840641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_93840873_93842725_93842839_93843625
ENSMUSG00000091243.3_1	chr16	+	2572	4	FSM	ENSMUSG00000091243.3	ENSMUST00000168064.3	7009	4	-41	4478	-41	-5	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGATTTAAGTTTATGCT	NA	False	NA	NA	False	AATAAA	-7	NA	65612101	65658776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_65612645_65624779_65625063_65636094_65636620_65657555
ENSMUSG00000091264.4_0	chr13	+	4167	2	FSM	ENSMUSG00000091264.4	ENSMUST00000165561.4	4483	2	300	16	300	-16	multi-exon	FALSE	canonical	3	181	junction_1	0	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGAAAACAAGTACACT	NA	False	NA	NA	False	AATAAA	-3	NA	41403619	41430037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_41403791_41426041
ENSMUSG00000091264.4_3	chr13	+	2725	1	ISM	ENSMUSG00000091264.4	ENSMUST00000165561.4	4483	2	23993	16	23993	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGAAAACAAGTACACT	NA	False	NA	NA	False	AATAAA	-3	NA	41427312	41430037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_41427300_41430000
ENSMUSG00000091311.4_0	chr13	+	4272	3	NIC	ENSMUSG00000091311.4	novel	4287	4	NA	NA	-31	-6	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACACGTTTTCTTGTGCA	NA	False	NA	NA	False	AGTAAA	-44	NA	59860066	59867103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_59860315_59861948_59862010_59863140
ENSMUSG00000091311.4_1	chr13	+	4314	4	FSM	ENSMUSG00000091311.4	ENSMUST00000165133.3	4287	4	-33	6	-33	-6	multi-exon	FALSE	canonical	1	2	junction_3	0.471404520791032	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACACGTTTTCTTGTGCA	NA	False	NA	NA	False	AGTAAA	-44	NA	59860064	59867103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_59860315_59861449_59861490_59861948_59862010_59863140
ENSMUSG00000091337.4_0	chr2	+	1657	1	FSM	ENSMUSG00000091337.4	ENSMUST00000164756.4	1691	1	33	1	33	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGCTTTGTCTAATAGC	NA	False	NA	17	True	AATAAA	-17	NA	125515047	125516704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_125515000_125516700
ENSMUSG00000091387.3_1	chr13	+	5067	3	FSM	ENSMUSG00000091387.3	ENSMUST00000171324.3	5087	3	20	0	20	0	multi-exon	FALSE	canonical	3	6	junction_1	3	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCAACTCCTCGGACTT	NA	False	NA	NA	False	AATAAA	-12	NA	97061216	97087414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_97061457_97072387_97072505_97082704
ENSMUSG00000091387.3_4	chr13	+	2841	1	Genic_Genomic	ENSMUSG00000091387.3	novel	NA	NA	NA	NA	23383	6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCCTCGGACTTGTGAGC	NA	False	NA	NA	False	AATAAA	-18	NA	97084579	97087420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_97084600_97087400
ENSMUSG00000091408.4_0	chr6	-	1583	1	FSM	ENSMUSG00000091408.4	ENSMUST00000178117.2	1065	1	114	-632	114	632	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCACATGTGACACTGTT	NA	False	NA	NA	False	NA	NA	NA	136464070	136462487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_136462500_136464100
ENSMUSG00000091474.3_28	chr7	+	2377	1	ISM	ENSMUSG00000091474.3	ENSMUST00000163475.3	4004	6	26894	2	1580	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTGGGGTAATGAATTT	NA	False	NA	43	True	AATAAA	-25	NA	41275578	41277955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_41275600_41278000
ENSMUSG00000091474.3_3	chr7	+	3979	6	FSM	ENSMUSG00000091474.3	ENSMUST00000163475.3	4004	6	23	2	-1	-2	multi-exon	FALSE	canonical	3	115	junction_1	46.5403051128804	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTGGGGTAATGAATTT	NA	False	NA	43	True	AATAAA	-25	NA	41248707	41277955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_41248825_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
ENSMUSG00000091474.3_6	chr7	+	4081	7	NIC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	76.9518247563587	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTGGGGTAATGAATTT	NA	False	NA	43	True	AATAAA	-25	NA	41248704	41277955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_41248825_41252859_41252959_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
ENSMUSG00000091478.3_0	chr11	-	533	1	FSM	ENSMUSG00000091478.3	ENSMUST00000081241.2	411	1	-10	-112	-10	112	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATGTGCCTGTGCCTG	8066	False	NA	NA	False	NA	NA	NA	100252962	100252429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_100252400_100253000
ENSMUSG00000091490.4_11	chr8	+	3019	7	NIC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	424	junction_1	48.9810053887105	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633574	43646918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_43633650_43636158_43636403_43636739_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
ENSMUSG00000091490.4_13	chr8	+	1538	9	FSM	ENSMUSG00000091490.4	ENSMUST00000210136.2	1552	9	14	0	14	0	multi-exon	FALSE	canonical	3	91	junction_2	178.11092049619	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633591	43646918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_43633650_43635378_43635395_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
ENSMUSG00000091490.4_46	chr8	+	4312	2	NIC	ENSMUSG00000091490.4	novel	1467	7	NA	NA	1692	1	intron_retention	FALSE	canonical	3	562	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGCTCTCTGCATGTG	NA	False	NA	22	True	AATAAA	-13	NA	43639774	43646919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_43643407_43646239
ENSMUSG00000091490.4_49	chr8	+	2997	3	ISM	ENSMUSG00000091490.4	ENSMUST00000163869.2	1467	7	4757	-1	2830	1	3prime_fragment	FALSE	canonical	3	533	junction_1	14.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGCTCTCTGCATGTG	NA	False	NA	22	True	AATAAA	-13	NA	43640912	43646919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_43643129_43643305_43643407_43646239
ENSMUSG00000091490.4_8	chr8	+	1541	8	FSM	ENSMUSG00000091490.4	ENSMUST00000209200.2	1519	8	-6	-16	-6	-1	multi-exon	FALSE	canonical	3	424	junction_1	49.9477277781891	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGTGGCTCTCTGCATG	NA	False	NA	20	True	AATAAA	-11	NA	43633571	43646917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
ENSMUSG00000091509.8_0	chr14	-	3551	3	FSM	ENSMUSG00000091509.8	ENSMUST00000164319.2	795	3	-106	-2650	-106	2631	multi-exon	FALSE	canonical	3	71	junction_2	0.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAACAGTTGTTAATG	NA	False	NA	NA	False	AATAAA	-9	NA	105352003	105344194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_105347239_105350904_105350964_105351555
ENSMUSG00000091509.8_2	chr14	-	3320	4	FSM	ENSMUSG00000091509.8	ENSMUST00000165350.8	1113	4	424	-2631	209	2631	multi-exon	FALSE	canonical	3	40	junction_2	13.0213499897497	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAACAGTTGTTAATG	NA	False	NA	NA	False	AATAAA	-9	NA	105351688	105344194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_105347239_105349754_105349839_105350904_105350964_105351555
ENSMUSG00000091509.8_3	chr14	-	4844	2	ISM	ENSMUSG00000091509.8	ENSMUST00000164319.2	795	3	-807	-2650	-592	2631	intron_retention	FALSE	canonical	3	72	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAACAGTTGTTAATG	NA	False	NA	NA	False	AATAAA	-9	NA	105352704	105344194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_105347239_105350904
ENSMUSG00000091509.8_4	chr14	-	3680	3	ISM	ENSMUSG00000091509.8	ENSMUST00000165350.8	1113	4	649	-2624	434	2624	3prime_fragment	FALSE	canonical	3	40	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTCTTAATAAAAACAGTT	NA	False	NA	NA	False	AATAAA	-2	NA	105351463	105344201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_105347239_105349754_105349839_105350904
ENSMUSG00000091509.8_5	chr14	-	497	2	ISM	ENSMUSG00000091509.8	ENSMUST00000165350.8	1113	4	2270	4	2055	-4	3prime_fragment	FALSE	canonical	3	49	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATAAGTTTGGCTTTAA	NA	False	NA	NA	False	ATTAAA	-6	NA	105349842	105346829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_105347239_105349754
ENSMUSG00000091510.5_0	chr7	+	718	1	NIC	ENSMUSG00000091510.5	novel	685	2	NA	NA	-2	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGAAGGAGGGTCCTGGT	57	False	NA	NA	False	AATAAA	-17	NA	45016654	45017372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_45016700_45017400
ENSMUSG00000091512.6_1	chr3	+	1275	7	FSM	ENSMUSG00000091512.6	ENSMUST00000168345.6	1295	7	16	4	16	-4	multi-exon	FALSE	canonical	3	124	junction_3	73.5090697351921	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGAATGAGCTCTGTATAG	96	False	NA	-2	True	AATAAA	-18	NA	137624302	137634522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
ENSMUSG00000091512.6_3	chr3	+	1248	7	FSM	ENSMUSG00000091512.6	ENSMUST00000197064.5	733	7	21	-536	1	-10	multi-exon	FALSE	canonical	2	2	junction_1	115.993773779266	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGTACCGAATGAGCTCT	81	False	NA	-8	True	AATAAA	-12	NA	137624287	137634516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_137624389_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
ENSMUSG00000091537.3_0	chr9	-	488	4	FSM	ENSMUSG00000091537.3	ENSMUST00000167504.3	944	4	209	247	0	52	multi-exon	FALSE	canonical	3	4656	junction_3	487.196743284134	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTCTCTAGTGTTCAG	NA	False	NA	NA	False	AATAAA	-18	NA	108911446	108907201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_108907494_108911069_108911158_108911238_108911295_108911394
ENSMUSG00000091537.3_1	chr9	-	572	3	ISM	ENSMUSG00000091537.3	ENSMUST00000167504.3	944	4	359	113	137	-113	3prime_fragment	FALSE	canonical	3	5339	junction_2	253	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTAAAAGCCTATCATTT	NA	False	NA	NA	False	ATTAAA	-7	NA	108911296	108907067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_108907494_108911069_108911158_108911238
ENSMUSG00000091552.3_0	chr10	+	1249	2	Genic_Genomic	ENSMUSG00000091552.3	novel	883	1	NA	NA	-6095	274	multi-exon	FALSE	canonical	2	11	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTGTGTGAAATAAACAA	NA	False	NA	NA	False	AATAAA	-1	NA	100186001	100193253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_+_100186070_100192072
ENSMUSG00000091552.3_1	chr10	+	1179	2	Genic_Genomic	ENSMUSG00000091552.3	novel	883	1	NA	NA	-974	204	multi-exon	FALSE	canonical	1	2	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTATTTTGTGGATAAAT	NA	False	NA	NA	False	AATACA	-14	NA	100191122	100193183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_+_100191191_100192072
ENSMUSG00000091552.3_2	chr10	+	1102	1	FSM	ENSMUSG00000091552.3	ENSMUST00000163114.3	883	1	-14	-205	-14	205	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTATTTTGTGGATAAATA	NA	False	NA	NA	False	AATACA	-15	NA	100192082	100193184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_100192100_100193200
ENSMUSG00000091563.9_0	chr14	-	1972	5	ISM	ENSMUSG00000091563.9	ENSMUST00000170207.8	1961	7	14427	1	14427	-1	3prime_fragment	FALSE	canonical	0	0	junction_2	2.44948974278318	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGTGTATGCTTCTGC	NA	False	NA	NA	False	AATAAA	-16	NA	18344820	18336989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_18338138_18341636_18341820_18342497_18342630_18343579_18343743_18344474
ENSMUSG00000091563.9_6	chr14	-	2103	8	NNC	ENSMUSG00000091563.9	novel	1961	7	NA	NA	-91687	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2.32992949004287	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCAGTGTATGCT	NA	False	NA	NA	False	AATAAA	-11	NA	18450934	18336994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_18338138_18341636_18341820_18342497_18342630_18343579_18343743_18344474_18344610_18354336_18354488_18357666_18357781_18450852
ENSMUSG00000091586.3_0	chr17	+	2947	13	NNC	ENSMUSG00000091586.3	novel	1693	13	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_12	9.27773619418492	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAGAAAAAATGAGAA	NA	False	NA	NA	False	NA	NA	NA	32725436	32749118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_32725553_32725867_32726067_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020_32747086_32747249_32747338_32747690
ENSMUSG00000091586.3_10	chr17	+	2864	12	NIC	ENSMUSG00000091586.3	novel	1693	13	NA	NA	1	6	combination_of_known_splicesites	FALSE	canonical	2	7	junction_11	10.0297079380366	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAATGAGAAATTAC	NA	False	NA	NA	False	NA	NA	NA	32725436	32749123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_32725553_32725867_32726067_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020_32747086_32747690
ENSMUSG00000091586.3_16	chr17	+	2239	12	NIC	ENSMUSG00000091586.3	novel	1693	13	NA	NA	-16	597	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	12.173674347026	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGCTTCCTGTGTGGTGG	NA	False	NA	NA	False	TTTAAA	-15	NA	32725419	32748465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_32725553_32725867_32726083_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020_32747086_32747690
ENSMUSG00000091586.3_2	chr17	+	2942	13	FSM	ENSMUSG00000091586.3	ENSMUST00000165999.2	1693	13	1	-1250	1	1	multi-exon	FALSE	canonical	2	14	junction_12	8.54725426997206	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAGAAAAAATGAGAA	NA	False	NA	NA	False	NA	NA	NA	32725436	32749118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_32725553_32725867_32726067_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020_32747086_32747249_32747333_32747690
ENSMUSG00000091586.3_30	chr17	+	2965	13	NIC	ENSMUSG00000091586.3	novel	1693	13	NA	NA	-6	1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	10.8892786211433	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAGAAAAAATGAGAA	NA	False	NA	NA	False	NA	NA	NA	32725429	32749118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_32725553_32725867_32726083_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020_32747086_32747249_32747333_32747690
ENSMUSG00000091586.3_6	chr17	+	1589	11	ISM	ENSMUSG00000091586.3	ENSMUST00000165999.2	1693	13	-12	638	-12	-638	5prime_fragment	FALSE	canonical	2	16	junction_2	8.26075057122535	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTGGTTGACCTGCAGG	NA	False	NA	NA	False	AATAGA	-19	NA	32725423	32747230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_32725553_32725867_32726067_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020
ENSMUSG00000091586.3_7	chr17	+	1589	10	ISM	ENSMUSG00000091586.3	ENSMUST00000165999.2	1693	13	-6	704	-6	-704	intron_retention	FALSE	canonical	2	16	junction_2	8.70646134407099	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCATGTCCATCT	NA	False	NA	NA	False	NA	NA	NA	32725429	32747164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_32725553_32725867_32726067_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814
ENSMUSG00000091594.3_0	chr7	-	3997	4	NNC	ENSMUSG00000091594.3	novel	3673	4	NA	NA	-11967	282	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	2.44948974278318	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAAGTCTATTCCCACA	NA	False	NA	NA	False	AATAAA	-14	NA	42388408	42354610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_42358310_42359840_42359902_42360100_42360228_42388298
ENSMUSG00000091594.3_2	chr7	-	1730	1	FSM	ENSMUSG00000091594.3	ENSMUST00000180131.2	123	1	-472	-1135	-472	357	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTTTTTCCTTTTTTAT	NA	False	NA	NA	False	CATAAA	-12	NA	42356265	42354535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_42354500_42356300
ENSMUSG00000091594.3_3	chr7	-	3796	3	ISM	ENSMUSG00000091594.3	ENSMUST00000166837.2	3673	4	16307	-284	-4341	284	3prime_fragment	FALSE	canonical	3	22	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGTCTATTCCCACAAA	NA	False	NA	NA	False	AATAAA	-16	NA	42360134	42354608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_42358310_42359840_42359902_42360100
ENSMUSG00000091614.3_0	chr17	-	1204	1	FSM	ENSMUSG00000091614.3	ENSMUST00000168877.2	510	1	-53	-641	-53	2	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTCTTTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	29738817	29737613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29737600_29738800
ENSMUSG00000091623.3_1	chr5	+	1469	1	FSM	ENSMUSG00000091623.3	ENSMUST00000046721.2	603	1	-864	-2	511	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGAGGTTTCTGGGTTTGTG	NA	False	NA	NA	False	ATTAAA	-31	NA	100126055	100127524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_100126100_100127500
ENSMUSG00000091625.9_0	chr6	-	483	5	FSM	ENSMUSG00000091625.9	ENSMUST00000170382.5	494	5	9	2	0	0	multi-exon	TRUE	canonical	3	1056	junction_2	222.021395365402	311	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGATTTGATTTATTA	NA	False	NA	NA	False	AATAAA	-14	NA	56681668	56678049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_56678275_56679080_56679154_56679990_56680019_56680298_56680395_56681607
ENSMUSG00000091639.3_0	chr9	-	1596	1	FSM	ENSMUSG00000091639.3	ENSMUST00000169182.3	1355	1	-96	-145	-96	145	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-7	NA	31848192	31846596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_31846600_31848200
ENSMUSG00000091655.4_0	chr17	+	533	1	FSM	ENSMUSG00000091655.4	ENSMUST00000174736.2	384	1	-41	-108	-41	108	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTTATATTTTTATTT	2669	False	NA	11	True	NA	NA	NA	35554843	35555376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35554800_35555400
ENSMUSG00000091698.9_0	chr14	+	1198	3	Fusion	ENSMUSG00000091698.9_ENSMUSG00000049235.9	novel	660	2	NA	NA	16	-354	multi-exon	FALSE	canonical	0	0	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACAGTGATCTCCAACT	9959	False	NA	NA	False	AATAAA	-20	NA	43935300	43993051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_+_43935631_43987358_43987491_43992315
ENSMUSG00000091703.3_0	chr2	+	545	1	FSM	ENSMUSG00000091703.3	ENSMUST00000165784.3	470	1	0	-75	0	75	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGTCGAAAAAAAAAATAATC	NA	False	NA	NA	False	AATAAA	-15	NA	89978762	89979307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_89978800_89979300
ENSMUSG00000091705.9_0	chr17	+	2208	8	NIC	ENSMUSG00000091705.9	novel	1262	7	NA	NA	-117	-4	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	3.13635691430002	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTCTGTGTTTGTTTC	4763	False	NA	NA	False	NA	NA	NA	35561100	35565734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35561373_35561575_35561846_35562088_35562365_35563730_35564007_35564133_35564251_35564429_35564463_35564635_35564685_35564819
ENSMUSG00000091705.9_4	chr17	+	2286	2	ISM	ENSMUSG00000091705.9	ENSMUST00000074806.12	1262	7	869	-968	869	0	intron_retention	FALSE	canonical	3	9	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTGTTTGTTTCTGTT	5749	False	NA	NA	False	NA	NA	NA	35562086	35565738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35562365_35563730
ENSMUSG00000091705.9_5	chr17	+	1642	6	NIC	ENSMUSG00000091705.9	novel	1150	5	NA	NA	895	-4	combination_of_known_junctions	FALSE	canonical	1	3	junction_4	2.33238075793812	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTCTGTGTTTGTTTC	5775	False	NA	NA	False	NA	NA	NA	35562112	35565734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35562365_35563730_35564007_35564133_35564251_35564429_35564463_35564635_35564685_35564819
ENSMUSG00000091705.9_8	chr17	+	2005	4	ISM	ENSMUSG00000091705.9	ENSMUST00000074806.12	1262	7	846	-970	846	2	intron_retention	FALSE	canonical	1	5	junction_3	1.63299316185545	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTTTGTTTCTGTTTG	5726	False	NA	NA	False	NA	NA	NA	35562063	35565740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_35562365_35563730_35564007_35564133_35564251_35564429
ENSMUSG00000091705.9_9	chr17	+	1575	5	NIC	ENSMUSG00000091705.9	novel	1262	7	NA	NA	916	-1	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	2.23606797749979	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTGTGTTTGTTTCTGT	5796	False	NA	NA	False	NA	NA	NA	35562133	35565737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35562365_35563730_35564007_35564133_35564251_35564429_35564463_35564819
ENSMUSG00000091735.3_0	chr9	-	1339	1	FSM	ENSMUSG00000091735.3	ENSMUST00000164834.3	1977	1	637	1	637	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTGTCTGCTGCTGAG	NA	False	NA	NA	False	AAAACA	-18	NA	106342500	106341161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_106341200_106342500
ENSMUSG00000091736.4_0	chrX	-	2864	1	FSM	ENSMUSG00000091736.4	ENSMUST00000065806.5	2867	1	2	1	2	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAATAGCTTGCTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	156351979	156349115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_156349100_156352000
ENSMUSG00000091764.4_0	chr8	+	2733	4	FSM	ENSMUSG00000091764.4	ENSMUST00000204285.3	4333	4	-1	1601	-1	1211	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTTGTAGTTTCATATA	NA	False	NA	NA	False	NA	NA	NA	70107140	70118031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70107247_70111912_70112040_70112223_70112285_70115592
ENSMUSG00000091779.9_0	chr10	+	1176	2	FSM	ENSMUSG00000091779.9	ENSMUST00000180664.2	1185	2	-24	33	-24	-33	multi-exon	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACAAGTATTCTGGA	NA	False	NA	NA	False	AATAAA	-12	NA	103979238	103981284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_103979308_103980177
ENSMUSG00000091780.4_0	chr15	-	620	1	ISM	ENSMUSG00000091780.4	ENSMUST00000167643.4	1145	3	1556	6	1556	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAATCTGTGCATGTGCT	NA	False	NA	-13	True	ATTAAA	-8	NA	89256465	89255845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_89255800_89256500
ENSMUSG00000091803.8_0	chr12	-	645	4	FSM	ENSMUSG00000091803.8	ENSMUST00000110340.9	668	4	15	8	-10	-8	multi-exon	FALSE	canonical	3	188	junction_1	77.5127229699888	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTTATGATGTTCTC	1013	False	NA	-54	True	AATAAA	-11	NA	81531869	81405807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81531670
ENSMUSG00000091803.8_1	chr12	-	225	1	ISM	ENSMUSG00000021139.18	ENSMUST00000164386.8	1043	6	173647	174	173503	-174	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTTATGATGTTCTC	NA	False	NA	-54	True	AATAAA	-11	NA	81406032	81405807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_81405800_81406000
ENSMUSG00000091803.8_3	chr12	-	590	4	FSM	ENSMUSG00000091803.8	ENSMUST00000002757.11	2007	4	26	1391	-9	0	multi-exon	FALSE	canonical	3	142	junction_1	95.530099968544	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGTATGCTTTTCAGT	1014	False	NA	-8	True	ATTAAA	-12	NA	81531868	81518868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81531670
ENSMUSG00000091803.8_4	chr12	-	414	4	FSM	ENSMUSG00000091803.8	ENSMUST00000168463.8	431	4	15	2	12	0	multi-exon	FALSE	canonical	3	31	junction_1	143.25501736414	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGTATGCTTTTCAGT	1010	False	NA	-8	True	ATTAAA	-12	NA	81531872	81518868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_81518946_81521360_81521424_81527704_81527777_81531670
ENSMUSG00000091811.3_0	chr7	-	1307	1	FSM	ENSMUSG00000091811.3	ENSMUST00000169612.3	1605	1	297	1	297	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACAGCGTTGGTTTCTGC	NA	False	NA	-8	True	ATTAAA	-18	NA	16007245	16005938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_16005900_16007200
ENSMUSG00000091831.7_0	chr17	-	1608	1	FSM	ENSMUSG00000091831.7	ENSMUST00000171504.6	1616	1	657	-649	657	649	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71766256	71764648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71764600_71766300
ENSMUSG00000091845.2_0	chr6	-	361	1	FSM	ENSMUSG00000091845.2	ENSMUST00000025040.6	390	1	16	13	16	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATTTATTT	NA	False	NA	-20	True	AATAAA	-14	NA	108117454	108117093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_108117100_108117500
ENSMUSG00000091890.3_0	chr7	-	165	1	FSM	ENSMUSG00000091890.3	ENSMUST00000205693.2	3096	1	2940	-9	2833	9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATACTTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	73387832	73387667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_73387700_73387800
ENSMUSG00000091896.9_0	chr18	+	1718	7	FSM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	29	733	0	615	multi-exon	FALSE	canonical	3	837	junction_2	121.947734706308	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGTGTGAATAGGCTT	NA	False	NA	NA	False	AATAAA	-25	NA	35904639	35939488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
ENSMUSG00000091896.9_25	chr18	+	560	1	ISM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	34319	732	4570	616	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTGTGAATAGGCTTT	NA	False	NA	NA	False	AATAAA	-26	NA	35938929	35939489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_35938900_35939500
ENSMUSG00000091931.6_0	chr12	-	175	1	ISM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	4149	202	4149	-202	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATGA	7433	False	NA	NA	False	NA	NA	NA	102719910	102719735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_102719700_102719900
ENSMUSG00000091931.6_1	chr12	-	1126	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	20	6	20	-6	multi-exon	FALSE	canonical	3	237	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTACATATTTTCTGTAG	6382	False	NA	-7	True	AATAAA	-14	NA	102724039	102719539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_102720426_102723799
ENSMUSG00000091955.3_0	chr7	+	463	1	FSM	ENSMUSG00000091955.3	ENSMUST00000170837.3	485	1	-9	31	-9	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCTTGTGGCAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-3	NA	24561628	24562091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_24561600_24562100
ENSMUSG00000091956.3_0	chr9	+	1336	2	FSM	ENSMUSG00000091956.3	ENSMUST00000171652.3	1327	2	-10	1	-10	-1	multi-exon	FALSE	canonical	3	27	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCTTGCAGCATTGATG	NA	False	NA	NA	False	AATAAA	-21	NA	67666708	67668211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_67666799_67666965
ENSMUSG00000091956.3_1	chr9	+	572	1	Genic_Genomic	ENSMUSG00000091956.3	novel	NA	NA	NA	NA	923	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTGCAGCATTGATGTT	NA	False	NA	NA	False	AATAAA	-23	NA	67667641	67668213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_+_67667600_67668200
ENSMUSG00000091957.4_0	chr18	-	930	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	3	32	3	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	390	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7426	False	NA	NA	False	AATAAA	-17	NA	61393040	61392110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_61392100_61393000
ENSMUSG00000091971.4_0	chr17	-	2395	1	FSM	ENSMUSG00000091971.4	ENSMUST00000087328.4	2967	1	5	567	5	-567	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGCCCCGCTGATGTG	9802	False	NA	NA	False	AATAAA	-24	NA	35191127	35188732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35188700_35191100
ENSMUSG00000091989.2_0	chr7	+	469	1	FSM	ENSMUSG00000091989.2	ENSMUST00000166096.2	468	1	10	-11	10	11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCTCACTGTGAGGA	4297	False	NA	NA	False	AATAAA	-11	NA	80157544	80158013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_80157500_80158000
ENSMUSG00000092019.5_3	chr12	+	1043	2	FSM	ENSMUSG00000092019.5	ENSMUST00000164838.3	1850	2	1	806	1	-806	multi-exon	FALSE	canonical	2	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGATGTATTTTATGTT	NA	False	NA	NA	False	AGTAAA	-34	NA	87665639	87668919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_87665828_87668064
ENSMUSG00000092035.9_0	chr6	+	6598	2	FSM	ENSMUSG00000092035.9	ENSMUST00000176551.3	6567	2	-39	8	-39	-5	multi-exon	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCAAATTGTGTCCTGAT	0	True	NA	NA	False	AATAAA	-28	NA	4747366	4760509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_4747579_4754123
ENSMUSG00000092035.9_1	chr6	+	3704	1	ISM	ENSMUSG00000092035.9	ENSMUST00000166678.2	6662	3	9501	4	9401	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAAATTGTGTCCTGATC	0	True	NA	NA	False	AATAAA	-29	NA	4756806	4760510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_4756800_4760500
ENSMUSG00000092060.5_0	chr5	-	3523	1	ISM	ENSMUSG00000092060.5	ENSMUST00000169190.5	7935	5	32127	3	31658	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTTGACTTGATTTT	NA	False	NA	-8	True	AATAAA	-17	NA	67553015	67549492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_67549500_67553000
ENSMUSG00000092060.5_1	chr5	-	7840	5	FSM	ENSMUSG00000092060.5	ENSMUST00000169190.5	7935	5	92	3	-90	-2	multi-exon	FALSE	canonical	3	28	junction_1	27.6710588883042	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTTGACTTGATTTT	NA	False	NA	-8	True	AATAAA	-17	NA	67585050	67549492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_67555794_67557403_67557645_67562773_67562863_67574798_67575366_67584408
ENSMUSG00000092060.5_2	chr5	-	7785	5	NIC	ENSMUSG00000092060.5	novel	7935	5	NA	NA	76	-2	combination_of_known_junctions	FALSE	canonical	3	56	junction_1	16.0682139642214	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTTGACTTGATTTT	NA	False	NA	-8	True	AATAAA	-17	NA	67585066	67549492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_67555794_67557474_67557645_67562773_67562863_67574798_67575366_67584408
ENSMUSG00000092060.5_3	chr5	-	7975	6	NIC	ENSMUSG00000092060.5	novel	8268	6	NA	NA	220	-2	combination_of_known_junctions	TRUE	canonical	3	39	junction_5	22.3374125627835	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTTGACTTGATTTT	NA	False	NA	-8	True	AATAAA	-17	NA	67585433	67549492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_67555794_67557474_67557645_67562773_67562863_67574798_67575366_67584408_67585136_67585312
ENSMUSG00000092060.5_9	chr5	-	8057	6	FSM	ENSMUSG00000092060.5	ENSMUST00000201972.2	8268	6	209	2	209	-2	multi-exon	FALSE	canonical	3	28	junction_1	28.5839115587773	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTTGACTTGATTTT	NA	False	NA	-8	True	AATAAA	-17	NA	67585444	67549492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_67555794_67557403_67557645_67562773_67562863_67574798_67575366_67584408_67585136_67585312
ENSMUSG00000092072.4_0	chr3	+	383	1	FSM	ENSMUSG00000092072.4	ENSMUST00000170669.4	429	1	10	36	10	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAATAAAAGAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	105941989	105942372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_105942000_105942400
ENSMUSG00000092074.3_1	chr17	-	686	5	FSM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	76	2559	-6	-2559	multi-exon	FALSE	canonical	3	2579	junction_4	2048.76394138027	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6367699	6360827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
ENSMUSG00000092074.3_11	chr17	-	637	4	ISM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	2540	2559	2458	-2559	3prime_fragment	FALSE	canonical	3	5389	junction_3	1056.21725458775	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6365235	6360827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_6361219_6361567_6361646_6361983_6362108_6365191
ENSMUSG00000092074.3_3	chr17	-	6167	3	ISM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	94	2559	12	-2559	intron_retention	FALSE	canonical	3	7133	junction_1	391.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6367681	6360827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_6361219_6361567_6361646_6361983
ENSMUSG00000092074.3_5	chr17	-	6538	2	ISM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	67	2553	-15	-2553	intron_retention	TRUE	canonical	3	7133	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTTTGTGTTCCTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	6367708	6360821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_6361219_6361567
ENSMUSG00000092074.3_6	chr17	-	4457	2	NIC	ENSMUSG00000092074.3	novel	3541	4	NA	NA	-6	-2559	intron_retention	FALSE	canonical	3	2579	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6367699	6360827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_6365234_6367648
ENSMUSG00000092074.3_7	chr17	-	798	5	Fusion	ENSMUSG00000118494.2_ENSMUSG00000092074.3	novel	3321	5	NA	NA	124	-2559	multi-exon	FALSE	canonical	3	145	junction_4	3028.61844534765	28	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6371887	6360827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_-_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6371724
ENSMUSG00000092074.3_9	chr17	-	4090	3	NIC	ENSMUSG00000092074.3	novel	3321	5	NA	NA	12	-2559	intron_retention	FALSE	canonical	3	2579	junction_2	2277	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6367681	6360827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_6361219_6361567_6365234_6367648
ENSMUSG00000092118.2_0	chr7	-	1684	1	FSM	ENSMUSG00000092118.2	ENSMUST00000169357.2	1691	1	1	6	1	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATTTTGTTCTTTGTA	NA	False	NA	-2	True	ATTAAA	-13	NA	51512014	51510330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_51510300_51512000
ENSMUSG00000092120.3_0	chr17	+	1991	3	ISM	ENSMUSG00000092120.3	ENSMUST00000169805.3	3775	6	23143	163	23143	-163	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGGCTGTTTGTTTG	7558	False	NA	NA	False	NA	NA	NA	17947151	17955255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_17947261_17948291_17948416_17953497
ENSMUSG00000092192.8_0	chr9	+	1694	9	FSM	ENSMUSG00000092192.8	ENSMUST00000034734.9	1975	9	46	235	46	-232	multi-exon	FALSE	canonical	3	12	junction_2	4.44233891097922	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGATTGGCTTTGGTATA	9224	False	NA	NA	False	ATTAAA	-17	NA	72866112	72880111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72866280_72867863_72868012_72868539_72868674_72869196_72869423_72871372_72871519_72872450_72872561_72876313_72876468_72879254_72879361_72879608
ENSMUSG00000092192.8_3	chr9	+	654	1	Genic_Genomic	ENSMUSG00000092192.8	novel	NA	NA	NA	NA	13633	7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAACCTTATTTTTTTAA	7267	False	NA	NA	False	AATAAA	-22	NA	72879699	72880353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_+_72879700_72880400
ENSMUSG00000092203.8_0	chr17	-	574	5	FSM	ENSMUSG00000092203.8	ENSMUST00000172501.8	579	5	0	5	0	-5	multi-exon	FALSE	canonical	3	94	junction_4	37.0497975702972	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTACTTAAATAGACTT	6010	False	NA	NA	False	AATAAA	-9	NA	35171444	35169223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111_35171150_35171327
ENSMUSG00000092203.8_11	chr17	-	485	4	FSM	ENSMUSG00000092203.8	ENSMUST00000174714.8	520	4	38	-3	24	0	multi-exon	FALSE	canonical	3	5	junction_2	75.5439533575579	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGACTTTTTCTGTGTC	6068	False	NA	NA	False	AATAAA	-19	NA	35171386	35169213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35169452_35169673_35169824_35171111_35171150_35171327
ENSMUSG00000092203.8_2	chr17	-	2091	1	FSM	ENSMUSG00000093009.3	ENSMUST00000175268.3	66	1	-1315	-710	-1315	710	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6146	False	NA	NA	False	AATAAA	-15	NA	35171308	35169217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35169200_35171300
ENSMUSG00000092203.8_3	chr17	-	2017	2	ISM	ENSMUSG00000093009.3_ENSMUSG00000092203.8	ENSMUST00000174173.2	635	3	0	-1204	0	0	intron_retention	FALSE	canonical	3	115	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6010	False	NA	NA	False	AATAAA	-15	NA	35171444	35169217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_35170902_35171111
ENSMUSG00000092203.8_4	chr17	-	423	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173070.8	434	4	10	1	1	0	multi-exon	FALSE	canonical	3	38	junction_1	32.4995726467629	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6017	False	NA	NA	False	AATAAA	-15	NA	35171437	35169217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35169452_35170860_35170902_35171111_35171150_35171327
ENSMUSG00000092203.8_5	chr17	-	310	2	FSM	ENSMUSG00000092203.8	ENSMUST00000174464.2	785	2	465	10	465	-5	multi-exon	FALSE	canonical	3	190	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTACTTAAATAGACTT	7699	False	NA	NA	False	AATAAA	-9	NA	35169755	35169223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35169452_35169673
ENSMUSG00000092203.8_6	chr17	-	955	3	FSM	ENSMUSG00000092203.8	ENSMUST00000174039.8	934	3	-21	0	1	0	multi-exon	FALSE	canonical	3	110	junction_2	40	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6023	False	NA	NA	False	AATAAA	-15	NA	35171431	35169217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_35169452_35169673_35169824_35170860
ENSMUSG00000092203.8_8	chr17	-	1608	4	NIC	ENSMUSG00000092203.8	novel	579	5	NA	NA	-3	0	intron_retention	FALSE	canonical	3	94	junction_3	41.206795556073	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6019	False	NA	NA	False	AATAAA	-15	NA	35171435	35169217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_35169452_35169673_35170902_35171111_35171150_35171327
ENSMUSG00000092212.4_0	chr9	-	435	1	ISM	ENSMUSG00000092212.4	ENSMUST00000173185.2	1458	6	10769	1	10769	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGAGTTGTACTGTCTAC	NA	False	NA	NA	False	NA	NA	NA	119049989	119049554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_119049600_119050000
ENSMUSG00000092225.2_0	chr7	-	4074	4	FSM	ENSMUSG00000092225.2	ENSMUST00000174558.2	4073	4	1	-2	1	2	multi-exon	FALSE	canonical	3	126	junction_3	34.9888871246603	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTCATTAGTAATTTGT	NA	False	NA	-12	True	AATAAA	-16	NA	42516657	42466250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_42470028_42471782_42471844_42472041_42472168_42516547
ENSMUSG00000092225.2_22	chr7	-	2441	1	Genic_Genomic	ENSMUSG00000092225.2	novel	NA	NA	NA	NA	47967	2	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTCATTAGTAATTTGT	NA	False	NA	-12	True	AATAAA	-16	NA	42468691	42466250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_42466200_42468700
ENSMUSG00000092225.2_5	chr7	-	5828	3	NIC	ENSMUSG00000092225.2	novel	4073	4	NA	NA	2	2	intron_retention	FALSE	canonical	3	126	junction_2	42.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTCATTAGTAATTTGT	NA	False	NA	-12	True	AATAAA	-16	NA	42516656	42466250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_42471844_42472041_42472168_42516547
ENSMUSG00000092232.2_0	chr14	+	1579	8	NIC	ENSMUSG00000092232.2	novel	1245	9	NA	NA	4	778	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	1114.29847978036	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAAAATTGGCCCTTTG	NA	False	NA	10	True	AATAAA	-9	NA	55120901	55136372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_55120964_55121253_55121342_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
ENSMUSG00000092232.2_1	chr14	+	1643	8	Fusion	ENSMUSG00000022194.16_ENSMUSG00000089682.11	novel	903	5	NA	NA	72	746	multi-exon	FALSE	canonical	3	17	junction_2	1110.05826285775	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAAAATTGGCCCTTTG	NA	False	NA	10	True	AATAAA	-9	NA	55121035	55136372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_+_55121162_55121253_55121342_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
ENSMUSG00000092232.2_14	chr14	+	1389	6	ISM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	273	-784	58	749	3prime_fragment	FALSE	canonical	3	2071	junction_5	209.02210409428	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGCCCTTTGGAT	NA	False	NA	13	True	AATAAA	-12	NA	55132347	55136375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
ENSMUSG00000092232.2_15	chr14	+	2127	5	FSM	ENSMUSG00000022194.16	ENSMUST00000139985.8	903	5	292	-1516	61	746	multi-exon	FALSE	canonical	3	2375	junction_4	102.828437214615	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAAAATTGGCCCTTTG	NA	False	NA	10	True	AATAAA	-9	NA	55132350	55136372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577
ENSMUSG00000092232.2_20	chr14	+	2033	4	ISM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	1037	-782	822	747	intron_retention	FALSE	canonical	3	2375	junction_3	116.584733134317	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAAATTGGCCCTTTGG	NA	False	NA	11	True	AATAAA	-10	NA	55133111	55136373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55133154_55133273_55133381_55134408_55134497_55134577
ENSMUSG00000092232.2_21	chr14	+	1279	5	ISM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	1049	-784	834	749	3prime_fragment	FALSE	canonical	3	2071	junction_4	222.541569150575	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGCCCTTTGGAT	NA	False	NA	13	True	AATAAA	-12	NA	55133123	55136375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
ENSMUSG00000092232.2_22	chr14	+	2112	3	ISM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	1038	-781	823	746	intron_retention	FALSE	canonical	3	2555	junction_1	51	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAAAATTGGCCCTTTG	NA	False	NA	10	True	AATAAA	-9	NA	55133112	55136372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55133154_55133273_55133381_55134408
ENSMUSG00000092232.2_24	chr14	+	1224	4	ISM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	1221	-781	1006	746	3prime_fragment	FALSE	canonical	3	2071	junction_3	239.289689613981	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAAAATTGGCCCTTTG	NA	False	NA	10	True	AATAAA	-9	NA	55133295	55136372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55133381_55134408_55134497_55134577_55134730_55135473
ENSMUSG00000092232.2_26	chr14	+	1974	3	ISM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	1215	-781	1000	746	intron_retention	FALSE	canonical	3	2375	junction_2	141	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAAAATTGGCCCTTTG	NA	False	NA	10	True	AATAAA	-9	NA	55133289	55136372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55133381_55134408_55134497_55134577
ENSMUSG00000092232.2_27	chr14	+	1129	3	ISM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	2344	-781	2129	746	3prime_fragment	FALSE	canonical	3	2071	junction_2	152	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAAAATTGGCCCTTTG	NA	False	NA	10	True	AATAAA	-9	NA	55134418	55136372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55134497_55134577_55134730_55135473
ENSMUSG00000092232.2_29	chr14	+	1885	2	ISM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	2333	-782	2118	747	intron_retention	FALSE	canonical	3	2375	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAAATTGGCCCTTTGG	NA	False	NA	11	True	AATAAA	-10	NA	55134407	55136373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55134497_55134577
ENSMUSG00000092232.2_30	chr14	+	997	2	ISM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	2559	-783	2344	748	3prime_fragment	FALSE	canonical	3	2071	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAATTGGCCCTTTGGA	NA	False	NA	12	True	AATAAA	-11	NA	55134633	55136374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55134730_55135473
ENSMUSG00000092232.2_6	chr14	+	2365	7	Fusion	ENSMUSG00000022194.16_ENSMUSG00000089682.11	novel	903	5	NA	NA	94	746	intron_retention	FALSE	canonical	3	17	junction_2	1190.78680804845	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAAAATTGGCCCTTTG	NA	False	NA	10	True	AATAAA	-9	NA	55121057	55136372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_+_55121162_55121253_55121342_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577
ENSMUSG00000092232.2_8	chr14	+	2385	6	ISM	ENSMUSG00000092232.2	ENSMUST00000134077.2	1245	9	1164	-781	1164	781	intron_retention	FALSE	canonical	2	7	junction_1	1017.46539990311	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGCCCTTTGGAT	NA	False	NA	13	True	AATAAA	-12	NA	55122061	55136375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_55122271_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577
ENSMUSG00000092260.8_0	chr8	-	2279	4	FSM	ENSMUSG00000092260.8	ENSMUST00000130458.8	2291	4	5	7	5	-7	multi-exon	FALSE	canonical	3	15	junction_3	1.24721912892465	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACAGACAATTTGGAAAA	9677	False	NA	NA	False	AATAAA	-9	NA	70202607	70194295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_70196261_70196841_70196903_70197110_70197238_70202481
ENSMUSG00000092260.8_2	chr8	-	4969	3	NIC	ENSMUSG00000092260.8	novel	2291	4	NA	NA	5	2744	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTATATTGTTGTGTGAC	9677	False	NA	NA	False	NA	NA	NA	70202607	70191544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_70196261_70197110_70197238_70202481
ENSMUSG00000092274.4_1	chr19	-	3170	1	FSM	ENSMUSG00002076852.1	ENSMUST00020181828.1	152	1	-1039	-1979	-1039	1979	mono-exon	FALSE	NA	NA	NA	NA	NA	433	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTTAGAATTGTCATGG	10003	False	NA	-12	True	AATAAA	-15	NA	5895504	5892334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5892300_5895500
ENSMUSG00000092274.4_2	chr19	-	2754	2	ISM	ENSMUSG00000092274.4	ENSMUST00000174829.2	1030	4	-217	-1101	0	-273	intron_retention	FALSE	canonical	3	17	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAGATAACACTTTGTAAA	10003	False	NA	-17	True	AATAAA	-25	NA	5895504	5892607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_5894463_5894605
ENSMUSG00000092310.3_0	chr9	+	1618	3	FSM	ENSMUSG00000092622.9	ENSMUST00000034737.13	1681	3	62	1	-50	-1	multi-exon	FALSE	canonical	3	216	junction_2	18.5	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCCCAGGTGTGTATTTG	NA	False	NA	25	True	AATAAA	-12	NA	73009741	73011719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_73009958_73010111_73010292_73010497
ENSMUSG00000092310.3_2	chr9	+	1617	3	NNC	ENSMUSG00000092622.9	novel	1681	3	NA	NA	-50	1	intron_retention	FALSE	canonical	3	24	junction_2	114.5	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCAGGTGTGTATTTGAA	NA	False	NA	27	True	AATAAA	-14	NA	73009741	73011721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_73009958_73010111_73010292_73010500
ENSMUSG00000092325.3_0	chr15	-	722	1	FSM	ENSMUSG00000092325.3	ENSMUST00000172604.3	619	1	214	-317	214	317	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATAATTTATTTTAAAAAAA	NA	False	NA	NA	False	AATAAA	-3	NA	81558865	81558143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_81558100_81558900
ENSMUSG00000092329.2_2	chr8	+	3848	15	ISM	ENSMUSG00000089704.10	ENSMUST00000034458.9	4113	16	63965	8	-10	-8	3prime_fragment	FALSE	canonical	3	174	junction_2	15.4373321687977	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGATAATCCTCCGCCGCT	8992	False	NA	24	True	AATAAA	-14	NA	125022094	125072453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125022191_125032253_125032408_125050410_125050510_125050730_125050799_125051009_125051076_125054830_125054953_125056451_125056540_125058747_125058836_125059306_125059411_125061013_125061141_125063312_125063406_125064000_125064085_125065181_125065309_125067557_125067678_125070041
ENSMUSG00000092329.2_3	chr8	+	3721	14	ISM	ENSMUSG00000089704.10	ENSMUST00000034458.9	4113	16	74155	8	10180	-8	3prime_fragment	FALSE	canonical	3	174	junction_1	16.0184804515388	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGATAATCCTCCGCCGCT	NA	False	NA	24	True	AATAAA	-14	NA	125032284	125072453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125032408_125050410_125050510_125050730_125050799_125051009_125051076_125054830_125054953_125056451_125056540_125058747_125058836_125059306_125059411_125061013_125061141_125063312_125063406_125064000_125064085_125065181_125065309_125067557_125067678_125070041
ENSMUSG00000092329.2_4	chr8	+	2198	13	ISM	ENSMUSG00000089704.10	ENSMUST00000034458.9	4113	16	92307	1382	28332	-1382	3prime_fragment	FALSE	canonical	3	176	junction_6	15.4513124217833	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTATTGCTTTGGGTTTTC	NA	False	NA	1	True	ACTAAA	-19	NA	125050436	125071079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125050510_125050730_125050799_125051009_125051076_125054830_125054953_125056451_125056540_125058747_125058836_125059306_125059411_125061013_125061141_125063312_125063406_125064000_125064085_125065181_125065309_125067557_125067678_125070041
ENSMUSG00000092329.2_5	chr8	+	3503	12	ISM	ENSMUSG00000089704.10	ENSMUST00000034458.9	4113	16	92597	8	28622	-8	3prime_fragment	FALSE	canonical	3	176	junction_5	14.355003159264	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGATAATCCTCCGCCGCT	NA	False	NA	24	True	AATAAA	-14	NA	125050726	125072453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125050799_125051009_125051076_125054830_125054953_125056451_125056540_125058747_125058836_125059306_125059411_125061013_125061141_125063312_125063406_125064000_125064085_125065181_125065309_125067557_125067678_125070041
ENSMUSG00000092329.2_6	chr8	+	3276	10	ISM	ENSMUSG00000089704.10	ENSMUST00000034458.9	4113	16	96792	6	32817	-6	3prime_fragment	FALSE	canonical	3	176	junction_3	15.4376483848519	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAATCCTCCGCCGCTGT	775	False	NA	26	True	AATAAA	-16	NA	125054921	125072455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125054953_125056451_125056540_125058747_125058836_125059306_125059411_125061013_125061141_125063312_125063406_125064000_125064085_125065181_125065309_125067557_125067678_125070041
ENSMUSG00000092329.2_7	chr8	+	3247	9	ISM	ENSMUSG00000089704.10	ENSMUST00000034458.9	4113	16	98320	6	34345	-6	3prime_fragment	FALSE	canonical	3	176	junction_2	10.2217598778293	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAATCCTCCGCCGCTGT	2303	False	NA	26	True	AATAAA	-16	NA	125056449	125072455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_125056540_125058747_125058836_125059306_125059411_125061013_125061141_125063312_125063406_125064000_125064085_125065181_125065309_125067557_125067678_125070041
ENSMUSG00000092335.2_0	chr7	-	3673	4	FSM	ENSMUSG00000092335.2_ENSMUSG00000108446.2	ENSMUST00000173283.2	1425	4	1	-2249	1	2249	multi-exon	FALSE	canonical	3	207	junction_3	19.6129209111409	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTAATTTGTTTTTCTTA	NA	False	NA	-5	True	AGTAAA	-21	NA	42241970	42226957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_42230333_42232070_42232132_42232329_42232457_42241860
ENSMUSG00000092335.2_1	chr7	-	3549	3	Fusion	ENSMUSG00000092335.2_ENSMUSG00000108446.2	novel	1425	4	NA	NA	-2	2249	multi-exon	FALSE	canonical	3	30	junction_2	106	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTAATTTGTTTTTCTTA	NA	False	NA	-5	True	AGTAAA	-21	NA	42241973	42226957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_-_42230333_42232070_42232132_42241860
ENSMUSG00000092335.2_2	chr7	-	3669	4	Fusion	ENSMUSG00000092335.2_ENSMUSG00000108446.2_ENSMUSG00000074158.10	novel	1425	4	NA	NA	3	2249	multi-exon	FALSE	canonical	3	27	junction_3	104.041658323321	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTAATTTGTTTTTCTTA	NA	False	NA	-5	True	AGTAAA	-21	NA	42292009	42226957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_-_42230333_42232070_42232132_42232329_42232457_42291903
ENSMUSG00000092341.4_0	chr19	-	1723	1	FSM	ENSMUSG00000092341.4	ENSMUST00000172812.3	6983	1	5256	4	48	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATTGTGTGCTTCTTTGT	9317	False	NA	-4	True	AATAAA	-13	NA	5847444	5845721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5845700_5847400
ENSMUSG00000092341.4_1	chr19	-	1124	2	FSM	ENSMUSG00000092341.4	ENSMUST00000174808.2	656	2	-465	-3	47	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGCTTCTTTGTGCA	9316	False	NA	-1	True	AATAAA	-16	NA	5847445	5845718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5845814_5846416
ENSMUSG00000092341.4_2	chr19	-	997	1	FSM	ENSMUSG00000092341.4	ENSMUST00000172812.3	6983	1	3	5983	2	243	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAATTATCTTTAAAGC	4064	False	NA	44	True	TATAAA	-6	NA	5852697	5851700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5851700_5852700
ENSMUSG00000092349.2_0	chr17	+	862	3	NNC	ENSMUSG00000092349.2	novel	807	3	NA	NA	-11916	-1	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_1	2.5	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGGTGTTCTGACTTAAA	NA	False	NA	12	True	NA	NA	NA	34112192	34125648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_34112309_34124501_34124892_34125292
ENSMUSG00000092349.2_4	chr17	+	646	2	ISM	ENSMUSG00000092349.2	ENSMUST00000172817.2	807	3	492	2	492	-2	3prime_fragment	FALSE	canonical	3	123	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTGGTGTTCTGACTTAA	1751	False	NA	11	True	NA	NA	NA	34124600	34125647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_34124892_34125292
ENSMUSG00000092354.8_11	chr5	+	894	3	NIC	ENSMUSG00000092354.8	novel	619	3	NA	NA	-46	-1	intron_retention	FALSE	canonical	3	132	junction_1	6	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCAATTTCCTTTGGCTC	NA	False	NA	14	True	ATTAAA	-24	NA	101987974	101992197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_101988098_101989616_101989940_101991749
ENSMUSG00000092354.8_14	chr5	+	5456	2	ISM	ENSMUSG00000092354.8	ENSMUST00000174312.2	619	3	-52	-2745	-52	667	intron_retention	FALSE	canonical	3	132	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTCCGTGCTTGTCA	NA	False	NA	NA	False	AATAAA	-7	NA	101987968	101994943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_101988098_101989616
ENSMUSG00000092354.8_17	chr5	+	4191	3	NNC	ENSMUSG00000092354.8	novel	619	3	NA	NA	-38	672	intron_retention	FALSE	non_canonical	0	0	junction_2	66	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCGTGCTTGTCAAGTAC	NA	False	NA	NA	False	AATAAA	-12	NA	101987982	101994948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_101988098_101989616_101993562_101994817
ENSMUSG00000092354.8_2	chr5	+	3636	3	FSM	ENSMUSG00000092354.8	ENSMUST00000174864.2	787	3	-9	-2840	1	670	multi-exon	FALSE	canonical	3	40	junction_1	52	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCGTGCTTGTCAAGT	NA	False	NA	NA	False	AATAAA	-10	NA	101985308	101994946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_101985425_101989616_101989940_101991749
ENSMUSG00000092354.8_21	chr5	+	1169	2	ISM	ENSMUSG00000092354.8	ENSMUST00000174864.2	787	3	3901	-91	1198	-1	3prime_fragment	FALSE	canonical	3	144	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCAATTTCCTTTGGCTC	NA	False	NA	14	True	ATTAAA	-24	NA	101989218	101992197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_101989940_101991749
ENSMUSG00000092354.8_29	chr5	+	1751	4	NIC	ENSMUSG00000092354.8	novel	619	3	NA	NA	-36	670	intron_retention	FALSE	canonical	0	0	junction_3	60.8604962188118	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCGTGCTTGTCAAGT	NA	False	NA	NA	False	AATAAA	-10	NA	101987984	101994946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_101988098_101989616_101989940_101992916_101993115_101993829
ENSMUSG00000092354.8_9	chr5	+	5448	2	ISM	ENSMUSG00000092354.8	ENSMUST00000173965.8	707	4	-9	-2795	-9	662	intron_retention	FALSE	canonical	3	40	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAAATGACTCCGTGCT	NA	False	NA	NA	False	AATAAA	-2	NA	101985298	101994938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_101985425_101989616
ENSMUSG00000092360.2_0	chr10	-	635	3	NNC	ENSMUSG00000001666.9	novel	649	3	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	232.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGACTTCTTTGCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	75609224	75607066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_75607341_75608571_75608748_75609039
ENSMUSG00000092368.2_0	chr17	+	1059	2	FSM	ENSMUSG00000092368.2	ENSMUST00000173900.2	1111	2	52	0	52	0	multi-exon	FALSE	canonical	3	20	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTATCTCTATTAGTC	NA	False	NA	NA	False	AATAAA	-45	NA	36305396	36349327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_36305453_36348324
ENSMUSG00000092368.2_1	chr17	+	732	1	ISM	ENSMUSG00000092368.2	ENSMUST00000173900.2	1111	2	43247	4	43247	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAACCCTATCTCTATT	NA	False	NA	NA	False	AATAAA	-41	NA	36348591	36349323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_36348600_36349300
ENSMUSG00000092390.2_0	chr17	+	1711	4	NNC	ENSMUSG00000092390.2	novel	1406	3	NA	NA	-13777	195	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	1.4142135623731	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGAATTGCCTCCTCC	NA	False	NA	-4	True	NA	NA	NA	38306760	38323482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_38306872_38320538_38320666_38320869_38320931_38322070
ENSMUSG00000092412.2_4	chr17	+	5650	9	ISM	ENSMUSG00000092412.2	ENSMUST00000163245.2	2860	10	6205	5	6205	-5	3prime_fragment	FALSE	canonical	0	0	junction_3	2.77263412660235	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATATCCTTGTTTCTTGT	NA	False	NA	NA	False	TATAAA	-11	NA	33855937	33864674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33860891_33860963_33861031_33861103_33861181_33863664_33863723_33863822_33863929_33864045_33864209_33864286_33864321_33864399_33864435_33864517
ENSMUSG00000092416.3_27	chr7	-	4054	7	FSM	ENSMUSG00000092416.3	ENSMUST00000174407.3	4069	7	14	1	13	-1	multi-exon	FALSE	canonical	3	140	junction_4	65.4285021140549	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTTACTTACTGCTGTCT	NA	False	NA	-16	True	AATAAA	-14	NA	42155136	42122810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42150781_42150850_42155033
ENSMUSG00000092416.3_3	chr7	-	3514	9	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	13	74726	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.241831418908	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTACGGTCTCAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	42155136	42048083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_42048405_42048513_42048565_42123692_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
ENSMUSG00000092416.3_30	chr7	-	3985	6	NIC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	13	-2	combination_of_known_junctions	FALSE	canonical	3	125	junction_5	88.2813683627525	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTTACTTACTGCTGTC	NA	False	NA	-17	True	AATAAA	-13	NA	42155136	42122811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42155033
ENSMUSG00000092416.3_31	chr7	-	3953	8	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	12	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	112.633050574122	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTTACTTACTGCTGTCT	NA	False	NA	-16	True	AATAAA	-14	NA	42155137	42122810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_42123626_42123697_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
ENSMUSG00000092416.3_39	chr7	-	2441	1	ISM	ENSMUSG00000092416.3	ENSMUST00000174407.3	4069	7	29899	1	1536	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTTACTTACTGCTGTCT	NA	False	NA	-16	True	AATAAA	-14	NA	42125251	42122810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_42122800_42125300
ENSMUSG00000092417.4_0	chr17	+	1476	3	FSM	ENSMUSG00000092417.4	ENSMUST00000165306.3	1518	3	42	0	42	0	multi-exon	FALSE	canonical	3	45	junction_1	21.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTACTTTCTTGAA	4631	False	NA	14	True	AATAAA	-14	NA	35340500	35343790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35340775_35342028_35342636_35343195
ENSMUSG00000092417.4_2	chr17	+	1231	3	NIC	ENSMUSG00000092417.4	novel	1518	3	NA	NA	40	1	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	24	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTACTTTCTTGAAT	4629	False	NA	15	True	AATAAA	-15	NA	35340498	35343791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35340527_35342028_35342636_35343195
ENSMUSG00000092417.4_3	chr17	+	2729	2	FSM	ENSMUSG00000092417.4	ENSMUST00000052167.9	1295	2	-1427	-7	42	-1	multi-exon	FALSE	canonical	3	88	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTGTTTACTTTCTTGA	4631	False	NA	13	True	AATAAA	-13	NA	35340500	35343789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_35342636_35343195
ENSMUSG00000092417.4_4	chr17	+	3323	1	Genic_Genomic	ENSMUSG00000092417.4	novel	NA	NA	NA	NA	10	1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTACTTTCTTGAAT	4599	False	NA	15	True	AATAAA	-15	NA	35340468	35343791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_+_35340500_35343800
ENSMUSG00000092417.4_6	chr17	+	1708	4	NIC	ENSMUSG00000092417.4	novel	1518	3	NA	NA	43	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	41.0203201677738	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTACTTTCTTGAAT	4632	False	NA	15	True	AATAAA	-15	NA	35340501	35343791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35340775_35341204_35341437_35342028_35342636_35343195
ENSMUSG00000092417.4_7	chr17	+	1469	4	NIC	ENSMUSG00000092417.4	novel	577	3	NA	NA	34	1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	40.7785346584314	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTACTTTCTTGAAT	4623	False	NA	15	True	AATAAA	-15	NA	35340492	35343791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_35340527_35341204_35341437_35342028_35342636_35343195
ENSMUSG00000092490.8_0	chr7	-	2527	5	FSM	ENSMUSG00000092490.8	ENSMUST00000174729.2	825	5	-181	-1521	18	1091	multi-exon	FALSE	canonical	3	19	junction_4	6.67083203206317	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTTTGTCTCACTTGTTT	NA	False	NA	NA	False	NA	NA	NA	8865832	8857754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_8859771_8860940_8861028_8861801_8861928_8863073_8863113_8865573
ENSMUSG00000092534.9_1	chr7	-	1351	3	FSM	ENSMUSG00000107068.2	ENSMUST00000202798.2	1412	3	45	16	45	-2	multi-exon	FALSE	canonical	3	276	junction_2	10	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGGGCGTGGTGGCGCA	9475	False	NA	-36	True	AATAAA	-12	NA	126616479	126614238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_126614642_126615371_126615455_126615614
ENSMUSG00000092541.8_1	chr9	-	1789	2	ISM	ENSMUSG00000092541.8	ENSMUST00000154586.3	547	4	3	32011	3	-32011	5prime_fragment	FALSE	canonical	3	172	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGTCATTAATATAAATG	NA	False	NA	34	True	AATAAA	-16	NA	88338551	88334692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_88336346_88338415
ENSMUSG00000092558.4_1	chr17	+	1868	4	FSM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	15	171	-11	-1	multi-exon	FALSE	canonical	3	195	junction_2	32.2937902527543	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTAGCGTTTTGGCCTTCTG	NA	False	NA	7	True	AATAAA	-12	NA	47922521	47935172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809
ENSMUSG00000092558.4_15	chr17	+	1597	2	ISM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	7247	171	7208	-1	3prime_fragment	FALSE	canonical	3	214	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTAGCGTTTTGGCCTTCTG	NA	False	NA	7	True	AATAAA	-12	NA	47929753	47935172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_47929988_47933809
ENSMUSG00000092558.4_16	chr17	+	1348	1	ISM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	11318	171	11279	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTAGCGTTTTGGCCTTCTG	NA	False	NA	7	True	AATAAA	-12	NA	47933824	47935172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_47933800_47935200
ENSMUSG00000092558.4_3	chr17	+	5694	3	FSM	ENSMUSG00000092558.4	ENSMUST00000138638.2	5680	3	-18	4	5	-4	multi-exon	FALSE	canonical	3	195	junction_2	38	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATTAGCGTTTTGGCCTT	NA	False	NA	4	True	AATAAA	-9	NA	47922514	47935169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_47922618_47923887_47924043_47929733
ENSMUSG00000092564.3_0	chr17	-	544	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174467.2	462	2	-85	3	23	-3	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATTTATATTCCCTTTT	1138	False	NA	-8	True	AATAAA	-20	NA	34128268	34127158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_34127561_34128126
ENSMUSG00000092574.5_2	chr7	-	2528	5	FSM	ENSMUSG00000092574.5	ENSMUST00000210322.2	1179	5	21	-1370	21	1370	multi-exon	FALSE	canonical	3	23	junction_4	6.74536878161602	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTTTGTCTCACTTGTTT	NA	False	NA	NA	False	NA	NA	NA	8096019	8087954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_8089971_8091140_8091228_8091987_8092114_8093259_8093299_8095759
ENSMUSG00000092574.5_3	chr7	-	2623	6	NNC	ENSMUSG00000092574.5	novel	1179	5	NA	NA	23	1277	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	15.2367975637927	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTATTGTGTCACTACT	NA	False	NA	NA	False	TATAAA	-7	NA	8096017	8088047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_8089971_8091140_8091228_8091987_8092114_8093259_8093299_8095258_8095449_8095759
ENSMUSG00000092600.2_0	chr17	-	163	1	ISM	ENSMUSG00000092600.2	ENSMUST00000174630.2	492	2	20695	11	20695	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACCCAATGTATTCTC	4066	False	NA	NA	False	NA	NA	NA	36054388	36054225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_36054200_36054400
ENSMUSG00000092607.10_0	chr3	-	806	7	FSM	ENSMUSG00000092607.10	ENSMUST00000172572.9	1054	7	60	188	-12	0	multi-exon	FALSE	canonical	3	365	junction_2	27.675199487387	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCCTGGAGTCCGGTT	1298	False	NA	-28	True	AATAAA	-23	NA	95041262	95037034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUSG00000092607.10_1	chr3	-	709	6	NIC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	46	junction_2	146.199042404525	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGATCCTGGAGTCCGG	1304	False	NA	-30	True	AATAAA	-21	NA	95041256	95037036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_95037195_95037474_95037670_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUSG00000092607.10_13	chr3	-	757	5	ISM	ENSMUSG00000092607.10	ENSMUST00000173462.3	666	6	60	2790	-12	-2226	5prime_fragment	FALSE	canonical	3	372	junction_4	25.2623732060153	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATTTTTTCAGGTTTTTT	1298	False	NA	NA	False	NA	NA	NA	95041262	95039829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUSG00000092622.9_0	chr9	+	1172	4	FSM	ENSMUSG00000092622.9	ENSMUST00000173734.9	1228	4	59	-3	-53	3	multi-exon	FALSE	canonical	3	51	junction_3	87.8116671569837	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGTGTGTATTTGAATG	NA	False	NA	29	True	AATAAA	-16	NA	73009738	73011723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_73009958_73010111_73010292_73010497_73011172_73011624
ENSMUSG00000092622.9_1	chr9	+	1079	1	NIC	ENSMUSG00000092310.3	novel	1016	7	NA	NA	895	-13477	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTGTGTATTTGAATGGA	286	False	NA	31	True	AATAAA	-18	NA	73010646	73011725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_73010600_73011700
ENSMUSG00000092624.3_0	chr7	-	2417	5	FSM	ENSMUSG00000092624.3	ENSMUST00000173038.2	909	5	-186	-1322	-16	1322	multi-exon	FALSE	canonical	1	2	junction_1	2.6809513236909	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTTCATGACTATTGT	NA	False	NA	NA	False	GATAAA	-15	NA	8292119	8283803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_8285708_8286871_8286959_8288132_8288259_8289403_8289442_8291857
ENSMUSG00000092627.3_1	chr1	+	2053	2	FSM	ENSMUSG00000092627.3	ENSMUST00000173856.2	1372	2	-7	-674	-7	674	multi-exon	FALSE	canonical	3	31	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTTATCGACCCGATT	NA	False	NA	9	True	GATAAA	-16	NA	89857948	89860258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_89858176_89858432
ENSMUSG00000092627.3_2	chr1	+	2284	1	FSM	ENSMUSG00000092627.3	ENSMUST00000189763.2	3030	1	-5	751	-5	677	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATCGACCCGATTCTT	NA	False	NA	12	True	GATAAA	-19	NA	89857977	89860261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_89858000_89860300
ENSMUSG00000092837.3_0	chr14	-	322	1	FSM	ENSMUSG00000092837.3	ENSMUST00000175096.3	319	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTGATCGAGATCCTTT	5444	False	NA	NA	False	NA	NA	NA	51045224	51044902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_51044900_51045200
ENSMUSG00000093392.2_0	chr3	+	686	1	FSM	ENSMUSG00000093392.2	ENSMUST00000175860.2	492	1	0	-194	0	194	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTAAATAAGAAAAAAAAAAA	5895	False	NA	NA	False	NA	NA	NA	122050376	122051062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_122050400_122051100
ENSMUSG00000093394.2_0	chr15	-	1203	2	FSM	ENSMUSG00000093394.2	ENSMUST00000176338.2	485	2	16	-734	16	1	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCCAATGTGTGACAGTT	NA	False	NA	-2	True	NA	NA	NA	88775670	88773981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_88775099_88775584
ENSMUSG00000093394.2_1	chr15	-	1372	1	NIC	ENSMUSG00000093394.2	novel	1234	2	NA	NA	330	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATTTCCAATGTGTGACA	NA	False	NA	-5	True	NA	NA	NA	88775356	88773984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_88774000_88775400
ENSMUSG00000093394.2_2	chr15	-	1191	2	NNC	ENSMUSG00000093394.2	novel	1234	2	NA	NA	327	-1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTCCAATGTGTGACAG	NA	False	NA	-4	True	NA	NA	NA	88775359	88773983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_88775099_88775283
ENSMUSG00000093405.2_0	chr7	-	1803	3	NNC	ENSMUSG00000093405.2	novel	380	2	NA	NA	-86	1739	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	15	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGATTTATATATCATAT	NA	False	NA	NA	False	TATAAA	-14	NA	65511826	65509014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_65510336_65510737_65510986_65511592
ENSMUSG00000093405.2_1	chr7	-	2201	2	FSM	ENSMUSG00000093405.2	ENSMUST00000176744.2	380	2	-86	-1735	-86	1735	multi-exon	FALSE	canonical	3	34	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGTGATGATTTATATATC	NA	False	NA	NA	False	TATAAA	-10	NA	65511826	65509018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_65510986_65511592
ENSMUSG00000093424.4_0	chr3	-	493	2	FSM	ENSMUSG00000093424.4	ENSMUST00000176569.3	555	2	61	1	2	-1	multi-exon	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGTACATTGTT	9796	False	NA	NA	False	NA	NA	NA	95222377	95218689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_95218919_95222113
ENSMUSG00000093445.8_0	chr5	+	3011	18	FSM	ENSMUSG00000093445.8	ENSMUST00000031734.16	3078	18	57	10	0	-10	multi-exon	FALSE	canonical	3	234	junction_8	20.6479805391719	483	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGTTGGTCCTCAGGTG	2241	False	NA	15	True	AATAAA	-17	NA	137627439	137639346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209
ENSMUSG00000093456.8_0	chr9	+	4628	4	ISM	ENSMUSG00000032594.12	ENSMUST00000035214.11	4559	6	21765	8	14	-8	intron_retention	FALSE	canonical	3	292	junction_2	17.4419672692682	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACTCTGTCCAAGT	NA	False	NA	9	True	AATAAA	-9	NA	107901464	107925973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_107901650_107909197_107909409_107918103_107918286_107921923
ENSMUSG00000093483.2_0	chr11	+	356	3	FSM	ENSMUSG00000093483.2	ENSMUST00000177150.2	383	3	23	4	2	-2	multi-exon	FALSE	non_canonical	0	0	junction_1	190.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATGGTATTTGTTTGGG	5871	False	NA	5	True	ATTAAA	-14	NA	83182547	83185453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83182660_83182792_83182924_83185340
ENSMUSG00000093483.2_3	chr11	+	2775	2	FSM	ENSMUSG00000093483.2_ENSMUSG00000065715.3	ENSMUST00000177248.2	431	2	-8	-2336	0	-2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATGGTATTTGTTTGGG	5869	False	NA	5	True	ATTAAA	-14	NA	83182545	83185453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83182660_83182792
ENSMUSG00000093483.2_4	chr11	+	495	2	FSM	ENSMUSG00000093483.2	ENSMUST00000176016.2	471	2	-27	3	-4	-2	multi-exon	FALSE	canonical	3	381	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATGGTATTTGTTTGGG	5865	False	NA	5	True	ATTAAA	-14	NA	83182541	83185453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83182924_83185340
ENSMUSG00000093483.2_5	chr11	+	340	3	FSM	ENSMUSG00000093483.2	ENSMUST00000176545.2	356	3	7	9	-1	-6	multi-exon	FALSE	canonical	3	49	junction_1	166	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAACCATGGTATTTGTT	5876	False	NA	1	True	ATTAAA	-10	NA	83182552	83185449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_83182660_83182799_83182924_83185340
ENSMUSG00000093565.2_0	chr17	+	489	1	FSM	ENSMUSG00000093565.2	ENSMUST00000176215.2	477	1	-16	4	3	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTACTGTGGTTTCAGACG	4767	False	NA	9	True	AATAAA	-12	NA	24747224	24747713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24747200_24747700
ENSMUSG00000093565.2_1	chr17	+	289	2	FSM	ENSMUSG00000093565.2	ENSMUST00000176921.2	298	2	4	5	4	-4	multi-exon	TRUE	canonical	3	77	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTACTGTGGTTTCAGACG	4768	False	NA	9	True	AATAAA	-12	NA	24747225	24747713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_24747411_24747609
ENSMUSG00000093574.2_0	chr5	-	2022	7	ISM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	11222	21	11157	0	3prime_fragment	FALSE	canonical	3	685	junction_2	40.6219015912462	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAAACAAAAACT	NA	False	NA	NA	False	NA	NA	NA	32931768	32893665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739
ENSMUSG00000093574.2_1	chr5	-	1408	3	ISM	ENSMUSG00000023452.20	ENSMUST00000120591.8	2491	9	7811	-102	1883	0	3prime_fragment	FALSE	canonical	3	685	junction_2	12.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAAACAAAAACT	NA	False	NA	NA	False	NA	NA	NA	32895845	32893665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_32894799_32895329_32895491_32895731
ENSMUSG00000093574.2_2	chr5	-	1764	5	ISM	ENSMUSG00000023452.20	ENSMUST00000120591.8	2491	9	6992	-102	1064	0	3prime_fragment	FALSE	canonical	3	685	junction_2	10.2072278312968	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAAACAAAAACT	NA	False	NA	NA	False	NA	NA	NA	32896664	32893665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480
ENSMUSG00000093574.2_3	chr5	-	1485	4	ISM	ENSMUSG00000023452.20	ENSMUST00000120591.8	2491	9	7482	-97	1554	-5	3prime_fragment	FALSE	canonical	3	685	junction_2	11.7851130197758	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATTAAAAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	32896174	32893670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125
ENSMUSG00000093594.2_4	chr4	-	1515	1	ISM	ENSMUSG00000093594.2	ENSMUST00000176201.2	2516	4	25573	434	25573	-434	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACCTCTCCTGTGTGCGT	NA	False	NA	-9	True	NA	NA	NA	147868724	147867209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_-_147867200_147868700
ENSMUSG00000093606.2_0	chr16	+	218	1	ISM	ENSMUSG00000093606.2	ENSMUST00000176296.2	2134	2	6919	693	6845	-693	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGCACTCTACCTTGCTT	NA	False	NA	NA	False	AAAACA	-17	NA	87299805	87300023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_87299800_87300000
ENSMUSG00000093622.2_0	chr17	+	548	2	FSM	ENSMUSG00000093622.2	ENSMUST00000175668.2	385	2	-23	-140	-23	140	multi-exon	FALSE	canonical	3	64	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCTGGTCTATCTTTTTT	257	False	NA	136	True	AATACA	-12	NA	71141635	71143179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_71141798_71142793
ENSMUSG00000093639.5_0	chr7	+	1577	2	FSM	ENSMUSG00000118553.2	ENSMUST00000239023.2	558	2	-16	-1003	-16	1003	multi-exon	FALSE	canonical	3	10	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTTTGTGTGGGTTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	43077093	43079259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43077145_43077733
ENSMUSG00000093661.2_0	chr6	-	4437	6	ISM	ENSMUSG00000093661.2	ENSMUST00000032151.3	2515	7	12900	14	12900	-14	3prime_fragment	FALSE	canonical	2	4	junction_1	1.35646599662505	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAATAGGAATGTTAG	NA	False	NA	NA	False	AATAAA	-3	NA	99630832	99602109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_99604015_99609217_99609374_99613069_99613137_99616123_99616185_99617576_99617672_99628679
ENSMUSG00000093661.2_4	chr6	-	2501	7	FSM	ENSMUSG00000093661.2	ENSMUST00000032151.3	2515	7	0	14	0	-14	multi-exon	FALSE	canonical	1	1	junction_6	2.11476292340825	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAATAGGAATGTTAG	NA	False	NA	NA	False	AATAAA	-3	NA	99643732	99602109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_99604015_99609217_99609374_99613069_99613137_99616123_99616185_99617576_99617672_99628679_99628753_99643588
ENSMUSG00000093674.8_0	chr10	-	381	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176010.8	582	4	191	10	-2	-3	multi-exon	FALSE	canonical	3	7075	junction_3	6241.33064516071	5392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATCAAACTGCTGTTAC	NA	False	NA	-28	True	AATAAA	-19	NA	128384983	128383992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956
ENSMUSG00000093674.8_1	chr10	-	458	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177163.8	544	3	76	10	25	-3	multi-exon	FALSE	canonical	3	15318	junction_2	3514.5	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATCAAACTGCTGTTAC	NA	False	NA	-28	True	AATAAA	-19	NA	128384946	128383992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128384299_128384526_128384550_128384817
ENSMUSG00000093674.8_3	chr10	-	379	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176683.8	437	4	48	10	-2	-3	multi-exon	FALSE	canonical	3	590	junction_3	9065.73447413697	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATCAAACTGCTGTTAC	NA	False	NA	-28	True	AATAAA	-19	NA	128384983	128383992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_128384299_128384526_128384550_128384817_128384841_128384956
ENSMUSG00000093752.2_0	chr2	-	5252	11	NIC	ENSMUSG00000093752.2	novel	5288	12	NA	NA	7	-3	combination_of_known_splicesites	FALSE	canonical	2	6	junction_3	189.884306881848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTGCTTTTATTACA	NA	False	NA	-4	True	AATAAA	-22	NA	168072277	168022908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_168027093_168029486_168029580_168031201_168031315_168052350_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000093752.2_1	chr2	-	5272	12	FSM	ENSMUSG00000093752.2	ENSMUST00000138667.2	5288	12	8	8	8	-8	multi-exon	FALSE	canonical	2	6	junction_3	157.884464505636	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAAATATTTGCTTTTA	NA	False	NA	-9	True	AATAAA	-17	NA	168072276	168022913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_168027093_168029486_168029580_168031201_168031315_168052350_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000093769.5_0	chr3	+	1663	1	FSM	ENSMUSG00000093769.5	ENSMUST00000177796.2	1825	1	161	1	161	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCTGGGTTTTTTATGG	NA	False	NA	NA	False	AATAAA	-17	NA	96154161	96155824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96154200_96155800
ENSMUSG00000093798.3_0	chr10	-	676	1	FSM	ENSMUSG00000093798.3	ENSMUST00000177767.3	1941	1	1347	-82	1347	82	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAAAACAATGTGG	NA	False	NA	NA	False	TTTAAA	-6	NA	14621699	14621023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_14621000_14621700
ENSMUSG00000093803.6_0	chr9	+	2157	13	NNC	ENSMUSG00000093803.6	novel	4016	11	NA	NA	-390	1096	at_least_one_novel_splicesite	TRUE	canonical	3	45	junction_1	43.8003678320425	84	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGGGTGCACAGTCAG	NA	False	NA	19	True	AATAAA	-20	NA	124195436	124202492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_124196070_124197152_124197351_124197648_124197753_124197928_124198032_124198703_124198779_124199151_124199239_124199674_124199832_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201396_124201794_124201908_124202239
ENSMUSG00000093803.6_27	chr9	+	1890	13	NNC	ENSMUSG00000093803.6	novel	422	4	NA	NA	-16	1096	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	49.060266226573	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGGGTGCACAGTCAG	NA	False	NA	19	True	AATAAA	-20	NA	124196381	124202492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_124196748_124197152_124197351_124197648_124197753_124197928_124198032_124198703_124198779_124199151_124199239_124199674_124199832_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201396_124201794_124201908_124202239
ENSMUSG00000093803.6_36	chr9	+	1326	11	NNC	ENSMUSG00000093803.6	novel	422	4	NA	NA	-280	1096	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_3	32.5799017800852	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGGGTGCACAGTCAG	NA	False	NA	19	True	AATAAA	-20	NA	124197648	124202492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_124197753_124197928_124198032_124198703_124198779_124199151_124199239_124199674_124199832_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201396_124201794_124201908_124202239
ENSMUSG00000093846.2_11	chr12	-	2010	3	NNC	ENSMUSG00000093846.2	novel	2857	5	NA	NA	-12	-11537	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	4.5	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	22206659	22177293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_22178816_22180145_22180207_22206232
ENSMUSG00000093846.2_24	chr12	-	2727	4	NNC	ENSMUSG00000093846.2	novel	2857	5	NA	NA	1	-5644	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	14.3372087784044	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAAGAAGATCTACTTTC	NA	False	NA	NA	False	NA	NA	NA	22206646	22171400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_22173526_22180145_22180207_22180406_22180534_22206232
ENSMUSG00000093846.2_7	chr12	-	2040	4	ISM	ENSMUSG00000093846.2	ENSMUST00000172838.3	2857	5	1	6348	1	-6348	5prime_fragment	FALSE	canonical	3	7	junction_1	12.1197726417986	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAAAGTTATCTAGTTAT	NA	False	NA	NA	False	NA	NA	NA	22206646	22172104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_22173543_22180145_22180207_22180406_22180534_22206232
ENSMUSG00000093846.2_8	chr12	-	3267	4	NNC	ENSMUSG00000093846.2	novel	2857	5	NA	NA	1	-10394	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	14.3372087784044	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGTATTTTGTTGT	NA	False	NA	NA	False	AATAAA	-12	NA	22206646	22176150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_22178816_22180145_22180207_22180406_22180534_22206232
ENSMUSG00000093847.3_0	chr12	-	1029	2	FSM	ENSMUSG00000093847.3	ENSMUST00000218054.3	1856	2	-2	829	-2	96	multi-exon	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTGTCTTGTTAATGCA	NA	False	NA	NA	False	AATAAA	-15	NA	88290798	88287720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_88288562_88290610
ENSMUSG00000093904.3_0	chr8	-	1014	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	-1	3889	-1	430	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	3289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAAGAAAATGTGCGGTG	NA	False	NA	NA	False	ATTAAA	-26	NA	127672591	127661305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
ENSMUSG00000093908.3_0	chr12	+	3018	4	NNC	ENSMUSG00000093908.3	novel	2016	2	NA	NA	-10	18276	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	5.55777733351102	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGCCTTTTCACAAATT	NA	False	NA	NA	False	NA	NA	NA	19437799	19458563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_19438215_19454315_19454443_19454644_19454706_19456148
ENSMUSG00000093930.3_0	chr13	+	3250	10	FSM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	-12	7	-12	-7	multi-exon	FALSE	canonical	3	428	junction_1	79.8526420630178	859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATATTTCAGCTCTTTG	NA	False	NA	8	True	AATAAA	-8	NA	120151969	120169611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ENSMUSG00000093930.3_1	chr13	+	3308	11	FSM	ENSMUSG00000093930.3	ENSMUST00000224188.2	3464	11	-29	185	-11	-7	multi-exon	FALSE	canonical	3	184	junction_1	180.959553491934	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATATTTCAGCTCTTTG	NA	False	NA	8	True	AATAAA	-8	NA	120151970	120169611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ENSMUSG00000093930.3_2	chr13	+	3409	11	NIC	ENSMUSG00000093930.3	novel	3464	11	NA	NA	-11	-5	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	216.614611695518	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTCAGCTCTTTGAG	NA	False	NA	10	True	AATAAA	-10	NA	120151970	120169613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_120152050_120156425_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ENSMUSG00000093930.3_27	chr13	+	2926	9	ISM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	9460	9	9442	-9	3prime_fragment	FALSE	canonical	3	589	junction_6	39.1118188659132	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAATATTTCAGCTCTT	NA	False	NA	6	True	AATAAA	-6	NA	120161441	120169609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ENSMUSG00000093930.3_37	chr13	+	1351	1	ISM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	16277	9	16259	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAATATTTCAGCTCTT	NA	False	NA	6	True	AATAAA	-6	NA	120168258	120169609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_120168300_120169600
ENSMUSG00000093989.2_0	chr11	-	611	3	FSM	ENSMUSG00000093989.2	ENSMUST00000040428.4	611	3	-2	2	-2	1	multi-exon	FALSE	canonical	3	718	junction_2	4	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTGCTGTCTGTGCTTT	NA	False	NA	-3	True	AATAAA	-18	NA	70130670	70128951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_70129297_70129763_70129841_70130481
ENSMUSG00000093990.2_0	chrX	-	113	1	FSM	ENSMUSG00000093990.2	ENSMUST00000179020.2	399	1	298	-12	298	12	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCATTAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-12	NA	123509161	123509048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_123509000_123509200
ENSMUSG00000094004.8_13	chrX	+	3584	3	ISM	ENSMUSG00000094004.8	ENSMUST00000180198.2	3836	5	4641	8	4641	-8	3prime_fragment	FALSE	canonical	3	158	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTCAAAAGTTTTTAT	NA	False	NA	NA	False	ATTAAA	-2	NA	134278673	134284134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_134278976_134280276_134280862_134281437
ENSMUSG00000094004.8_14	chrX	+	3632	2	ISM	ENSMUSG00000094004.8	ENSMUST00000180198.2	3836	5	5902	0	5902	0	3prime_fragment	FALSE	canonical	3	161	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134279934	134284142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_134280862_134281437
ENSMUSG00000094004.8_15	chrX	+	2226	1	ISM	ENSMUSG00000094004.8	ENSMUST00000180198.2	3836	5	7726	158	7726	9	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTAAGTCCATGAGAT	NA	False	NA	NA	False	AGTAAA	-9	NA	134281758	134283984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_134281800_134284000
ENSMUSG00000094004.8_2	chrX	+	3817	5	FSM	ENSMUSG00000094004.8	ENSMUST00000113173.8	3677	5	25	-165	25	-2	multi-exon	FALSE	canonical	3	153	junction_2	39.7955713616478	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGTTTTTATTGGTTC	NA	False	NA	NA	False	ATTAAA	-8	NA	134274057	134284140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134274160_134274357_134274485_134278675_134278976_134280276_134280862_134281437
ENSMUSG00000094004.8_3	chrX	+	3660	5	FSM	ENSMUSG00000094004.8	ENSMUST00000180198.2	3836	5	25	151	25	16	multi-exon	FALSE	canonical	3	42	junction_2	73.5272058492637	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCATGAGATTCATTTA	NA	False	NA	NA	False	AGTAAA	-16	NA	134274057	134283991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134274160_134274357_134274477_134278675_134278976_134280276_134280862_134281437
ENSMUSG00000094021.8_1	chr14	+	3143	5	FSM	ENSMUSG00000094021.8	ENSMUST00000169215.8	984	5	-2153	-6	-2153	6	multi-exon	FALSE	canonical	0	0	junction_3	8	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACACAGCAGTGTATG	NA	False	NA	NA	False	AATAAA	-9	NA	15422649	15433244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_15424996_15425726_15425890_15426844_15426977_15427652_15427837_15432926
ENSMUSG00000094076.8_0	chr10	+	1937	5	NNC	ENSMUSG00000094076.8	novel	4725	4	NA	NA	-8	535	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	20.8851023459307	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAATGATATACTGC	4185	False	NA	NA	False	AATAAA	-11	NA	81648011	81659729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_81648118_81656960_81657088_81657287_81657349_81657885_81659472_81659672
ENSMUSG00000094076.8_1	chr10	+	1837	4	NNC	ENSMUSG00000094076.8	novel	4725	4	NA	NA	-16	31417	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	6.68331255192114	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCTGACAAATGTAATCA	4177	False	NA	NA	False	NA	NA	NA	81648003	81693741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_81648118_81656960_81657088_81691636_81691698_81692206
ENSMUSG00000094076.8_2	chr10	+	1935	4	NNC	ENSMUSG00000094076.8	novel	4725	4	NA	NA	-8	126356	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	16.9901932498329	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAATGAAAATGATATACT	4185	False	NA	NA	False	AATAAA	-9	NA	81648011	81788680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_81648118_81656960_81657088_81657287_81657349_81787039
ENSMUSG00000094076.8_4	chr10	+	1844	4	FSM	ENSMUSG00000094076.8	ENSMUST00000188096.7	4725	4	-8	2889	-8	241	multi-exon	FALSE	canonical	2	6	junction_1	18.1903515328563	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATTAAATTATTGTCTTG	4185	False	NA	NA	False	ATTAAA	-41	NA	81648011	81659435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81648118_81656960_81657088_81657287_81657349_81657885
ENSMUSG00000094076.8_5	chr10	+	2025	3	FSM	ENSMUSG00000094076.8	ENSMUST00000099439.4	1497	3	7	-535	7	535	multi-exon	FALSE	canonical	3	43	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAATGATATACTGC	5316	False	NA	NA	False	AATAAA	-11	NA	81656967	81659729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81657088_81657287_81657349_81657885
ENSMUSG00000094076.8_8	chr10	+	179	1	ISM	ENSMUSG00000094076.8	ENSMUST00000188096.7	4725	4	11469	2657	2528	473	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTGTCATTCAAG	7837	False	NA	NA	False	NA	NA	NA	81659488	81659667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81659500_81659700
ENSMUSG00000094103.3_0	chr12	+	1381	5	FSM	ENSMUSG00000094103.3	ENSMUST00000177978.3	3863	5	-30	2512	-30	-2512	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACTGTGGATTTCCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	55246346	55261441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_55246572_55252464_55252639_55257516_55257584_55258966_55259065_55260624
ENSMUSG00000094103.3_6	chr12	+	997	1	ISM	ENSMUSG00000094103.3	ENSMUST00000177978.3	3863	5	16107	473	16107	-473	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAATCTTACTTTCCATT	NA	False	NA	NA	False	AATAAA	-17	NA	55262483	55263480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_55262500_55263500
ENSMUSG00000094125.2_1	chr2	+	3072	2	NNC	ENSMUSG00000094125.2	novel	732	2	NA	NA	-787	467	intron_retention	FALSE	non_canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTGAAAAAAAAATGGATGA	9891	False	NA	NA	False	AATAAA	-15	NA	83785249	83788996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_83785274_83785948
ENSMUSG00000094125.2_4	chr2	+	2821	1	FSM	ENSMUSG00000094125.2	ENSMUST00000179192.2	2493	1	139	-467	139	467	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTGAAAAAAAAATGGATGA	NA	False	NA	NA	False	AATAAA	-15	NA	83786175	83788996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_83786200_83789000
ENSMUSG00000094132.8_10	chr14	-	2084	8	NNC	ENSMUSG00000094132.8	novel	882	7	NA	NA	-2	1049	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10.6961751699056	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACACAGCAGTGTATG	NA	False	NA	NA	False	AATAAA	-9	NA	17614199	17592872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_17593998_17596548_17596732_17597407_17597540_17598489_17598653_17599386_17599522_17609286_17609438_17612629_17612744_17614118
ENSMUSG00000094132.8_14	chr14	-	5971	4	ISM	ENSMUSG00000094132.8	ENSMUST00000166776.8	882	7	11177	-1049	11177	1049	intron_retention	FALSE	canonical	0	0	junction_3	13.589211407093	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACACAGCAGTGTATG	NA	False	NA	NA	False	AATAAA	-9	NA	17603020	17592872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_17593998_17596548_17596732_17597407_17597540_17598489
ENSMUSG00000094132.8_21	chr14	-	1947	5	ISM	ENSMUSG00000094132.8	ENSMUST00000166776.8	882	7	14469	-1051	14469	1051	3prime_fragment	FALSE	canonical	0	0	junction_3	12.8646803302686	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCAGTGTATGCT	NA	False	NA	NA	False	AATAAA	-11	NA	17599728	17592870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_17593998_17596548_17596732_17597407_17597540_17598489_17598653_17599386
ENSMUSG00000094132.8_9	chr14	-	1169	2	ISM	ENSMUSG00000094132.8	ENSMUST00000166776.8	882	7	17607	-1051	17607	1051	3prime_fragment	FALSE	canonical	3	31	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCAGTGTATGCT	NA	False	NA	NA	False	AATAAA	-11	NA	17596590	17592870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_17593998_17596548
ENSMUSG00000094144.9_0	chr10	+	1178	2	FSM	ENSMUSG00000094144.9	ENSMUST00000181239.2	1185	2	-24	31	-24	-31	multi-exon	FALSE	canonical	3	5	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACAAGTATTCTGGAGT	NA	False	NA	NA	False	AATAAA	-14	NA	104013275	104015321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_104013345_104014212
ENSMUSG00000094151.2_7	chr14	+	1433	4	Fusion	ENSMUSG00000094151.2_ENSMUSG00000115262.2	novel	690	2	NA	NA	-292	-338	multi-exon	FALSE	canonical	0	0	junction_1	11.6714276000077	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	42988568	43045107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_+_42988898_43039360_43039493_43040175_43040358_43044317
ENSMUSG00000094151.2_8	chr14	+	1249	3	Fusion	ENSMUSG00000094151.2_ENSMUSG00000115262.2	novel	690	2	NA	NA	-291	-339	multi-exon	FALSE	canonical	0	0	junction_1	8.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCTTCACTCTTAAGAA	NA	False	NA	NA	False	AATAAA	-12	NA	42988569	43045106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_+_42988898_43039360_43039493_43044317
ENSMUSG00000094152.6_2	chr7	+	2840	13	FSM	ENSMUSG00000094152.6	ENSMUST00000213347.2	2865	13	16	9	16	-7	multi-exon	FALSE	canonical	0	0	junction_4	6.56326053794064	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCAGACTGCGTGAGGC	NA	False	NA	NA	False	AATAAA	-12	NA	44890524	44922782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44890728_44906859_44906961_44908426_44908903_44909283_44909442_44909624_44909752_44909899_44910076_44910240_44910352_44910496_44910739_44917438_44917623_44917871_44918074_44918196_44918357_44921914_44922078_44922245
ENSMUSG00000094152.6_6	chr7	+	1319	4	FSM	ENSMUSG00000094152.6	ENSMUST00000210163.2	1241	4	-82	4	-82	-4	multi-exon	FALSE	canonical	3	13	junction_3	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGACTGCGTGAGGCTCG	NA	False	NA	NA	False	AATAAA	-15	NA	44917491	44922785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44917623_44917871_44918357_44921914_44922078_44922245
ENSMUSG00000094196.3_2	chrX	-	1749	5	Genic_Genomic	ENSMUSG00000094196.3	novel	963	1	NA	NA	-9503	375	multi-exon	FALSE	canonical	3	11	junction_3	4.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCTTTAATCTCTTGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	153742004	153731163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_153732567_153733511_153733601_153740339_153740441_153741158_153741264_153741953
ENSMUSG00000094248.2_0	chr13	+	444	1	FSM	ENSMUSG00000094248.2	ENSMUST00000091745.6	480	1	-29	65	-29	-65	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	21994605	21995049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_21994600_21995000
ENSMUSG00000094336.2_0	chr2	+	3071	2	NNC	ENSMUSG00000094336.2	novel	732	2	NA	NA	-786	467	intron_retention	FALSE	non_canonical	0	0	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTGAAAAAAAAATGGATGA	NA	False	NA	NA	False	AATAAA	-15	NA	83791060	83794806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_83791084_83791758
ENSMUSG00000094336.2_1	chr2	+	3047	1	FSM	ENSMUSG00000094336.2	ENSMUST00000178960.2	2493	1	-88	-466	-88	466	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATTGAAAAAAAAATGGATG	NA	False	NA	NA	False	AATAAA	-14	NA	83791758	83794805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_83791800_83794800
ENSMUSG00000094344.2_0	chr4	+	102	1	FSM	ENSMUSG00000094344.2	ENSMUST00000180255.2	345	1	282	-39	282	39	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	320	False	NA	33	True	AATAAA	-13	NA	32965169	32965271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_32965200_32965300
ENSMUSG00000094365.2_0	chr7	-	1602	10	FSM	ENSMUSG00000036733.17	ENSMUST00000042726.14	1784	10	181	1	8	-1	multi-exon	FALSE	canonical	3	640	junction_5	133.345925331332	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCTGACTGGACTTAGAA	3792	False	NA	-15	True	AATAAA	-15	NA	30349561	30340426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362
ENSMUSG00000094370.8_9	chr14	+	493	1	ISM	ENSMUSG00000094370.8	ENSMUST00000177556.8	1955	7	22743	6	22743	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCAGTGTATGCT	NA	False	NA	NA	False	AATAAA	-11	NA	16750938	16751431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_16750900_16751400
ENSMUSG00000094378.8_1	chrX	+	2042	7	FSM	ENSMUSG00000094378.8	ENSMUST00000101180.8	2029	7	-16	3	-16	-3	multi-exon	TRUE	canonical	1	1	junction_6	4.6785562825394	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTTCTTTTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	148567452	148609687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_148567561_148582582_148582709_148583428_148583509_148587159_148588119_148601122_148601205_148602010_148602061_148609050
ENSMUSG00000094441.3_0	chr17	-	3533	4	FSM	ENSMUSG00000094441.3	ENSMUST00000008830.10	3544	4	10	1	10	-1	multi-exon	FALSE	canonical	3	111	junction_3	10.077477638554	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTTTGTTGTGTTGTGG	NA	False	NA	NA	False	ATTAAA	-15	NA	33474109	33458692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33461925_33462686_33462745_33462981_33463109_33473993
ENSMUSG00000094441.3_1	chr17	-	1841	1	ISM	ENSMUSG00000094441.3	ENSMUST00000008830.10	3544	4	13586	1	13586	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTTTGTTGTGTTGTGG	NA	False	NA	NA	False	ATTAAA	-15	NA	33460533	33458692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_33458700_33460500
ENSMUSG00000094441.3_2	chr17	-	3770	3	NIC	ENSMUSG00000094441.3	novel	3544	4	NA	NA	10	-1	intron_retention	FALSE	canonical	3	111	junction_2	3.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTTTGTTGTGTTGTGG	NA	False	NA	NA	False	ATTAAA	-15	NA	33474109	33458692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_33461925_33462686_33463109_33473993
ENSMUSG00000094446.2_0	chr13	+	611	1	FSM	ENSMUSG00000094446.2	ENSMUST00000075962.9	483	1	-16	-112	-16	112	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-12	NA	55233573	55234184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_55233600_55234200
ENSMUSG00000094475.8_10	chr2	+	4436	5	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-3608	2786	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	108.699126031445	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175432162	175448439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_175432264_175435718_175435774_175442797_175442925_175443129_175443191_175444347
ENSMUSG00000094475.8_11	chr2	+	4336	4	FSM	ENSMUSG00000094475.8	ENSMUST00000178120.8	1497	4	-53	-2786	-53	2786	multi-exon	FALSE	canonical	3	15	junction_3	123.327026865791	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175435717	175448439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_175435774_175442797_175442925_175443129_175443191_175444347
ENSMUSG00000094475.8_4	chr2	+	4444	5	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-589241	2785	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	116.363654119317	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	174846529	175448438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_174846640_175435718_175435774_175442797_175442925_175443129_175443191_175444347
ENSMUSG00000094483.3_1	chr11	-	4162	1	FSM	ENSMUSG00000094483.3	ENSMUST00000179343.3	8319	1	4148	9	4148	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGACAGTCTTGTGCCC	NA	False	NA	-12	True	AATAAA	-14	NA	6421769	6417607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6417600_6421800
ENSMUSG00000094483.3_2	chr11	-	2609	1	FSM	ENSMUSG00000094483.3	ENSMUST00000179343.3	8319	1	-113	5823	-113	-5823	mono-exon	FALSE	NA	NA	NA	NA	NA	359	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGATCGCCTCTTCTATAT	NA	False	NA	-7	True	AATAAA	-14	NA	6426030	6423421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_6423400_6426000
ENSMUSG00000094497.2_0	chr1	+	654	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	-53	-118	-53	118	mono-exon	FALSE	NA	NA	NA	NA	NA	476	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	AATAAA	-18	NA	43228262	43228916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_43228300_43228900
ENSMUSG00000094499.4_15	chr13	-	6940	2	ISM	ENSMUSG00000094499.4	ENSMUST00000234850.2	3029	10	-9	23223	-9	-22988	5prime_fragment	FALSE	canonical	3	14	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCTATACTTAAAAATCAC	NA	False	NA	NA	False	NA	NA	NA	66549941	66522200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_66529024_66549824
ENSMUSG00000094499.4_17	chr13	-	2691	5	NNC	ENSMUSG00000094499.4	novel	3029	10	NA	NA	-2	288519	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	16.6038399173203	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTGACTTCCGGTGGCC	NA	False	NA	NA	False	AATAAA	-17	NA	66549934	66210458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_66212709_66213158_66213302_66384209_66384271_66384471_66384599_66549824
ENSMUSG00000094595.2_0	chr4	+	2515	2	FSM	ENSMUSG00000094595.2	ENSMUST00000180239.2	4358	2	0	1843	0	-1843	multi-exon	FALSE	canonical	3	26	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATTGAATTTATGTTA	4	True	NA	NA	False	AATAAA	-13	NA	11579664	11585748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_11580108_11583676
ENSMUSG00000094595.2_1	chr4	+	1489	1	ISM	ENSMUSG00000094595.2	ENSMUST00000180239.2	4358	2	4596	1842	4596	-1842	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTGAATTTATGTTAT	4600	False	NA	NA	False	AATAAA	-14	NA	11584260	11585749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_11584300_11585700
ENSMUSG00000094595.2_2	chr4	+	1797	1	Genic_Genomic	ENSMUSG00000094595.2	novel	NA	NA	NA	NA	6137	7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCAGAATTCCATTCGT	6141	False	NA	NA	False	AATAAA	-20	NA	11585801	11587598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_11585800_11587600
ENSMUSG00000094664.2_0	chr5	-	407	1	FSM	ENSMUSG00000094664.2	ENSMUST00000148282.2	333	1	-61	-13	-61	13	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAACAAAAGGGAGCCT	4036	False	NA	NA	False	TTTAAA	-13	NA	123393937	123393530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_123393500_123393900
ENSMUSG00000094708.2_0	chr5	-	1132	1	FSM	ENSMUSG00000094708.2	ENSMUST00000180167.2	1002	1	46	-176	46	176	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-10	NA	106011522	106010390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_106010400_106011500
ENSMUSG00000094724.9_0	chr17	+	961	9	FSM	ENSMUSG00000094724.9	ENSMUST00000089119.13	1783	9	310	512	-2	-4	multi-exon	FALSE	canonical	0	0	junction_3	237.179784130098	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTGTTTGGCTTTTTC	NA	False	NA	NA	False	AAAAAG	-7	NA	7246303	7265585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_7246498_7248506_7248568_7251537_7251591_7252454_7252513_7256120_7256192_7259079_7259194_7262027_7262074_7263832_7263908_7265296
ENSMUSG00000094724.9_10	chr17	+	3675	2	NIC	ENSMUSG00000094724.9	novel	571	5	NA	NA	2467	-4	intron_retention	FALSE	canonical	3	774	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTGTTTGGCTTTTTC	NA	False	NA	NA	False	AAAAAG	-7	NA	7260521	7265585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_7263908_7265296
ENSMUSG00000094724.9_11	chr17	+	1857	8	NIC	ENSMUSG00000094724.9	novel	1783	9	NA	NA	-34	-4	intron_retention	FALSE	canonical	3	652	junction_3	39.1329497367888	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTGTTTGGCTTTTTC	NA	False	NA	NA	False	AAAAAG	-7	NA	7246271	7265585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_7246498_7248506_7248568_7251537_7252513_7256120_7256192_7259079_7259194_7262027_7262074_7263832_7263908_7265296
ENSMUSG00000094724.9_6	chr17	+	894	8	NIC	ENSMUSG00000094724.9	novel	1783	9	NA	NA	7	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	253.225961850483	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTGTTTGGCTTTTTC	NA	False	NA	NA	False	AAAAAG	-7	NA	7246312	7265585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_7246498_7248506_7248568_7251537_7251591_7256120_7256192_7259079_7259194_7262027_7262074_7263832_7263908_7265296
ENSMUSG00000094777.3_0	chr13	-	445	1	FSM	ENSMUSG00000094777.3	ENSMUST00000081342.7	482	1	1	36	1	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAAAAAAAGGC	NA	False	NA	NA	False	NA	NA	NA	22017676	22017231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_22017200_22017700
ENSMUSG00000094786.2_26	chr2	+	4141	4	FSM	ENSMUSG00000094786.2	ENSMUST00000108947.3	1209	4	-94	-2838	6	2546	multi-exon	FALSE	canonical	3	122	junction_1	52.0405824546788	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	177190013	177204102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_177190111_177198701_177198829_177199035_177199097_177200246
ENSMUSG00000094786.2_28	chr2	+	4197	5	NIC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	5	2546	intron_retention	FALSE	canonical	3	153	junction_2	35.4436171968946	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	177190012	177204102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177199097_177200246
ENSMUSG00000094786.2_34	chr2	+	1420	4	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	7	-485	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	39.4208066888541	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAGATAAAAAGACTCAT	NA	False	NA	NA	False	NA	NA	NA	177190014	177200177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035
ENSMUSG00000094870.9_0	chr13	-	3235	8	NIC	ENSMUSG00000094870.9	novel	2561	8	NA	NA	-228	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_7	54.2684182972914	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTATGTGTATGGGTGT	NA	False	NA	75	True	AGTAAA	-17	NA	120252653	120226723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252355
ENSMUSG00000094870.9_1	chr13	-	2958	6	ISM	ENSMUSG00000094870.9	ENSMUST00000177916.8	3067	7	518	82	414	-81	3prime_fragment	FALSE	canonical	3	148	junction_5	14.0199857346575	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAATATTGCTATTTT	NA	False	NA	-6	True	AATAAA	-15	NA	120251823	120226804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_120228563_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684
ENSMUSG00000094870.9_10	chr13	-	1437	1	ISM	ENSMUSG00000094870.9	ENSMUST00000177916.8	3067	7	24100	82	9463	-81	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAATATTGCTATTTT	NA	False	NA	-6	True	AATAAA	-15	NA	120228241	120226804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_120226800_120228200
ENSMUSG00000094870.9_12	chr13	-	3090	8	FSM	ENSMUSG00000094870.9	ENSMUST00000223813.2	2561	8	-6	-523	0	-81	multi-exon	FALSE	canonical	3	47	junction_7	43.7488192260485	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAATATTGCTATTTT	NA	False	NA	-6	True	AATAAA	-15	NA	120252274	120226804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252040
ENSMUSG00000094870.9_13	chr13	-	2382	3	ISM	ENSMUSG00000094870.9	ENSMUST00000177916.8	3067	7	14546	82	-91	-81	3prime_fragment	FALSE	canonical	3	163	junction_2	13	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAATATTGCTATTTT	NA	False	NA	-6	True	AATAAA	-15	NA	120237795	120226804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_120228563_120230241_120230373_120237302
ENSMUSG00000094870.9_2	chr13	-	3307	7	ISM	ENSMUSG00000094870.9	ENSMUST00000178271.3	2966	8	68	82	0	-81	3prime_fragment	FALSE	canonical	3	107	junction_3	24.5453095768259	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAATATTGCTATTTT	NA	False	NA	-6	True	AATAAA	-15	NA	120252274	120226804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684
ENSMUSG00000094870.9_3	chr13	-	3192	7	NIC	ENSMUSG00000094870.9	novel	2561	8	NA	NA	0	-81	intron_retention	FALSE	canonical	3	47	junction_6	45.1568254961405	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAATATTGCTATTTT	NA	False	NA	-6	True	AATAAA	-15	NA	120252274	120226804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_120228563_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252040
ENSMUSG00000094870.9_5	chr13	-	2980	7	FSM	ENSMUSG00000094870.9	ENSMUST00000177916.8	3067	7	1	86	1	-85	multi-exon	FALSE	canonical	3	32	junction_6	50.5426112854842	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGTAAAATCAATATTGCTA	NA	False	NA	-10	True	AATAAA	-11	NA	120252340	120226808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_120228563_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
ENSMUSG00000094870.9_7	chr13	-	2889	8	FSM	ENSMUSG00000094870.9	ENSMUST00000178271.3	2966	8	-6	83	-6	-82	multi-exon	FALSE	canonical	3	32	junction_7	48.3110668861025	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATCAATATTGCTATTT	NA	False	NA	-7	True	AATAAA	-14	NA	120252348	120226805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
ENSMUSG00000094870.9_9	chr13	-	3256	7	FSM	ENSMUSG00000094870.9	ENSMUST00000223722.2	3109	7	-228	81	-228	-81	multi-exon	FALSE	canonical	3	13	junction_6	57.4207182895589	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAATATTGCTATTTT	NA	False	NA	-6	True	AATAAA	-15	NA	120252653	120226804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_120228563_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252355
ENSMUSG00000094885.8_1	chrX	+	2043	7	FSM	ENSMUSG00000094885.8	ENSMUST00000177554.2	2028	7	-16	1	-16	-1	multi-exon	FALSE	canonical	0	0	junction_1	5.58022301426107	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	147880931	147921147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_147881040_147898081_147898208_147898926_147899007_147902668_147903628_147912815_147912898_147913703_147913754_147920509
ENSMUSG00000094885.8_2	chrX	+	2761	6	NIC	ENSMUSG00000094885.8	novel	2028	7	NA	NA	-16	-2	intron_retention	TRUE	canonical	0	0	junction_1	4.31740662898458	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTTTTTTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	147880931	147921146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_147881040_147898081_147899007_147902668_147903628_147912815_147912898_147913703_147913754_147920509
ENSMUSG00000094910.2_0	chr12	+	848	2	FSM	ENSMUSG00000094910.2	ENSMUST00000178224.2	5786	2	24	4914	24	-4914	multi-exon	FALSE	canonical	3	15	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCTTAGCAGTCAATTA	NA	False	NA	NA	False	NA	NA	NA	105420138	105454440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105420410_105453863
ENSMUSG00000094910.2_1	chr12	+	1837	1	ISM	ENSMUSG00000094910.2	ENSMUST00000178224.2	5786	2	37395	8	37395	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTGTGTCTGGCTCCC	3468	False	NA	0	True	ATTAAA	-14	NA	105457509	105459346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_105457500_105459300
ENSMUSG00000094932.8_1	chr2	+	4533	6	NNC	ENSMUSG00000094932.8	novel	1497	4	NA	NA	-3612	2785	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	100.95147349098	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	175529717	175545997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_175529815_175533277_175533333_175534637_175534740_175540356_175540484_175540688_175540750_175541906
ENSMUSG00000094932.8_10	chr2	+	4336	4	FSM	ENSMUSG00000094932.8	ENSMUST00000178133.8	1497	4	-53	-2786	-53	2786	multi-exon	FALSE	canonical	3	16	junction_3	120.723743407095	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175533276	175545998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_175533333_175540356_175540484_175540688_175540750_175541906
ENSMUSG00000094932.8_19	chr2	+	4280	3	FSM	ENSMUSG00000094932.8	ENSMUST00000189494.3	1494	3	0	-2786	0	2786	multi-exon	FALSE	canonical	3	16	junction_2	130	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175540356	175545998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_175540484_175540688_175540750_175541906
ENSMUSG00000094932.8_4	chr2	+	4452	5	NNC	ENSMUSG00000094932.8	novel	1497	4	NA	NA	-3633	2785	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	106.376689175778	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	175529696	175545997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_175529815_175533277_175533333_175540356_175540484_175540688_175540750_175541906
ENSMUSG00000094932.8_7	chr2	+	1282	4	NNC	ENSMUSG00000094932.8	novel	1497	4	NA	NA	-3613	937	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	111.283421945948	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAATCAATACTGTTCCC	NA	False	NA	NA	False	NA	NA	NA	175529716	175541690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_175529815_175533277_175533333_175540356_175540484_175540688
ENSMUSG00000094936.9_1	chr19	-	1727	4	FSM	ENSMUSG00000094936.9	ENSMUST00000180248.8	2610	4	22	861	1	-1	multi-exon	FALSE	canonical	3	26	junction_3	29.8923996285938	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTATGTGTGCTTTGAGA	NA	False	NA	-5	True	AATAAA	-15	NA	4843907	4835181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4835596_4837388_4838071_4842425_4842849_4843699
ENSMUSG00000094936.9_2	chr19	-	1262	3	ISM	ENSMUSG00000094936.9	ENSMUST00000179189.9	1411	4	1297	-153	1288	-1	3prime_fragment	FALSE	canonical	3	77	junction_2	10	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTATGTGTGCTTTGAGA	NA	False	NA	-5	True	AATAAA	-15	NA	4842591	4835181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4835596_4837388_4838071_4842425
ENSMUSG00000094936.9_4	chr19	-	1706	4	FSM	ENSMUSG00000094936.9	ENSMUST00000179189.9	1411	4	-142	-153	-101	-1	multi-exon	FALSE	canonical	3	70	junction_3	11.4406682011537	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTATGTGTGCTTTGAGA	NA	False	NA	-5	True	AATAAA	-15	NA	4844030	4835181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_4835596_4837388_4838071_4842425_4842849_4843843
ENSMUSG00000094936.9_5	chr19	-	894	2	ISM	ENSMUSG00000096370.9	ENSMUST00000179909.8	1435	3	23670	0	14164	0	3prime_fragment	FALSE	canonical	3	97	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGTGTGCTTTGAGAAA	1446	False	NA	-3	True	AATAAA	-17	NA	4837866	4835179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4835596_4837388
ENSMUSG00000094936.9_6	chr19	-	975	1	ISM	ENSMUSG00000094936.9	ENSMUST00000180248.8	2610	4	8630	4	8580	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGCTGCTTTGTCTTGGG	4013	False	NA	NA	False	AATAAA	-9	NA	4835299	4834324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_4834300_4835300
ENSMUSG00000094941.2_0	chrX	+	1935	6	ISM	ENSMUSG00000094941.2	ENSMUST00000179021.2	2022	7	9541	3	9541	-3	3prime_fragment	TRUE	canonical	0	0	junction_2	5.76194411635517	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTTCTTTTTTGTGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	148064913	148087996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_148065042_148065760_148065841_148069512_148070472_148079665_148079748_148080553_148080604_148087360
ENSMUSG00000094942.8_12	chr13	-	2251	3	FSM	ENSMUSG00000094942.8	ENSMUST00000202194.2	736	3	-31	-1484	-5	-3	multi-exon	FALSE	canonical	1	2	junction_1	20.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTGTGTGTGGATCAG	NA	False	NA	-15	True	NA	NA	NA	62530996	62516144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62518166_62519623_62519751_62530893
ENSMUSG00000094942.8_13	chr13	-	2291	4	Fusion	ENSMUSG00000055228.9_ENSMUSG00000094942.8	novel	2310	4	NA	NA	-58	-4	multi-exon	FALSE	canonical	3	23	junction_1	23.7954243967663	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCTTGTGTGTGGATCA	NA	False	NA	-16	True	NA	NA	NA	62706383	62516145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62706300
ENSMUSG00000094942.8_4	chr13	-	2312	4	FSM	ENSMUSG00000094942.8	ENSMUST00000187656.7	2310	4	-5	3	-5	-3	multi-exon	FALSE	canonical	3	23	junction_1	23.1708629293104	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTGTGTGTGGATCAG	NA	False	NA	-15	True	NA	NA	NA	62530996	62516144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62518166_62519376_62519438_62519623_62519751_62530893
ENSMUSG00000094942.8_6	chr13	-	2688	8	Fusion	ENSMUSG00000113450.2_ENSMUSG00000094942.8	novel	2310	4	NA	NA	-3	-3	multi-exon	FALSE	canonical	1	2	junction_5	49.4888154752451	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTGTGTGTGGATCAG	9535	False	NA	-15	True	NA	NA	NA	62614623	62516144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62555228_62555290_62555482_62555610_62604500_62604562_62604746_62604874_62614520
ENSMUSG00000094942.8_7	chr13	-	2296	4	Fusion	ENSMUSG00000113450.2_ENSMUSG00000094942.8	novel	2310	4	NA	NA	0	-3	multi-exon	FALSE	canonical	3	23	junction_1	26.1661358757205	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTGTGTGTGGATCAG	9551	False	NA	-15	True	NA	NA	NA	62614607	62516144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62614520
ENSMUSG00000094973.3_0	chr6	+	1566	2	FSM	ENSMUSG00000094973.3	ENSMUST00000204530.2	1573	2	1	6	1	-6	multi-exon	FALSE	canonical	3	8	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGGAAACAAAAAAGTAA	NA	False	NA	NA	False	ATTAAA	-35	NA	136304537	136306975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_136304647_136305518
ENSMUSG00000094974.2_0	chr14	+	483	1	FSM	ENSMUSG00000094974.2	ENSMUST00000100614.6	438	1	-8	-37	-8	37	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAATCTGG	NA	False	NA	NA	False	AATAAA	-14	NA	53140241	53140724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_53140200_53140700
ENSMUSG00000094989.2_0	chr13	-	681	1	FSM	ENSMUSG00000094989.2	ENSMUST00000075549.8	579	1	-16	-86	-16	86	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	72603475	72602794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_72602800_72603500
ENSMUSG00000095022.9_0	chr10	+	1214	2	FSM	ENSMUSG00000095022.9	ENSMUST00000181703.8	1246	2	-1	33	-1	-33	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACAAGTATTCTGGA	NA	False	NA	NA	False	AATAAA	-12	NA	104021392	104023828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_104021500_104022721
ENSMUSG00000095022.9_1	chr10	+	1126	2	FSM	ENSMUSG00000095022.9	ENSMUST00000181707.2	1185	2	-24	83	-24	-83	multi-exon	FALSE	canonical	3	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTGAAGTTGGCATTT	NA	False	NA	NA	False	GATAAA	-13	NA	104021784	104023778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_104021854_104022721
ENSMUSG00000095026.3_0	chr8	+	828	3	FSM	ENSMUSG00000095026.3	ENSMUST00000213065.2	842	3	-1	15	-1	-13	multi-exon	FALSE	canonical	3	28	junction_1	4.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAGCATAAACTGAGTA	NA	False	NA	NA	False	NA	NA	NA	71171190	71175268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71171282_71174425_71174587_71174692
ENSMUSG00000095026.3_1	chr8	+	1125	4	FSM	ENSMUSG00000095026.3	ENSMUST00000179347.3	1149	4	-2	26	-2	-26	multi-exon	FALSE	canonical	2	5	junction_1	14.4299072146089	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAAAACTAAATAAG	NA	False	NA	NA	False	NA	NA	NA	71171189	71175255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71171282_71173068_71173378_71174425_71174587_71174692
ENSMUSG00000095042.2_0	chr4	-	1248	1	FSM	ENSMUSG00000095042.2	ENSMUST00000119266.2	1002	1	-67	-179	-67	179	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	57372021	57370773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_57370800_57372000
ENSMUSG00000095082.2_0	chrX	+	2041	7	FSM	ENSMUSG00000095082.2	ENSMUST00000112740.2	2026	7	-16	1	-16	-1	multi-exon	TRUE	canonical	0	0	junction_3	4.07226390762354	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTTTTTTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	148724634	148767977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_148724743_148744867_148744994_148745713_148745794_148749452_148750412_148759566_148759649_148760454_148760505_148767341
ENSMUSG00000095082.2_1	chrX	+	972	4	ISM	ENSMUSG00000095082.2	ENSMUST00000112740.2	2026	7	25553	5	25553	-5	3prime_fragment	FALSE	canonical	1	1	junction_3	4.32049379893857	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTATTTCTTTTTTTGTGT	NA	False	NA	NA	False	AATAAA	-14	NA	148750203	148767973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_148750412_148759566_148759649_148760454_148760505_148767341
ENSMUSG00000095098.3_0	chr19	-	1005	1	FSM	ENSMUSG00000095098.3	ENSMUST00000179549.3	4715	1	343	3367	-47	-3362	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCGAAGCCTGGCCAGCT	5284	False	NA	-8	True	AATAAA	-16	NA	5507579	5506574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5506600_5507600
ENSMUSG00000095098.3_1	chr19	-	4180	2	FSM	ENSMUSG00000095098.3	ENSMUST00000236881.2	4165	2	-16	1	-16	-1	multi-exon	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGGCTAGAGTCATAT	5315	False	NA	NA	False	NA	NA	NA	5507548	5503213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5507213_5507367
ENSMUSG00000095115.3_0	chr7	-	3766	1	FSM	ENSMUSG00000095115.3	ENSMUST00000178344.3	6865	1	1	3098	1	-3098	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGGTCATTGTTTCATT	NA	False	NA	NA	False	GATAAA	-13	NA	118091197	118087431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_118087400_118091200
ENSMUSG00000095123.2_0	chr10	+	2845	1	FSM	ENSMUSG00000095123.2	ENSMUST00000178920.2	4838	1	1990	3	1990	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTGCAGTCTTGTTAAT	2378	False	NA	NA	False	AATAAA	-15	NA	4343576	4346421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_4343600_4346400
ENSMUSG00000095180.11_1	chrX	+	847	6	FSM	ENSMUSG00000095180.11	ENSMUST00000184866.10	893	6	27	19	27	-19	multi-exon	FALSE	canonical	3	2792	junction_1	493.533626007388	1124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAAATATTGATACAAAT	8532	False	NA	-2	True	AATAAA	-43	NA	36891662	36897289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ENSMUSG00000095180.11_27	chrX	+	810	5	ISM	ENSMUSG00000095180.11	ENSMUST00000239523.1	868	6	261	15	261	-12	3prime_fragment	FALSE	canonical	3	3777	junction_4	167.307165118533	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTGATACAAATATCTTAG	9453	False	NA	5	True	ATTAAA	-2	NA	36892583	36897296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ENSMUSG00000095193.3_0	chr17	+	3088	4	FSM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	-13	4	-13	-4	multi-exon	FALSE	canonical	3	81	junction_3	17.6635217326557	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCTTCGTCATGG	NA	False	NA	NA	False	NA	NA	NA	95172332	95185745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_95172441_95181413_95181541_95181729_95181791_95182953
ENSMUSG00000095193.3_1	chr17	+	2268	1	ISM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	11132	4	2064	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCTTCGTCATGG	NA	False	NA	NA	False	NA	NA	NA	95183477	95185745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_95183500_95185700
ENSMUSG00000095195.8_0	chr14	-	239	1	Genic_Genomic	ENSMUSG00000095195.8	novel	NA	NA	NA	NA	21960	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTATGCTTCTGCGT	NA	False	NA	NA	False	AATAAA	-18	NA	18875790	18875551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_-_18875600_18875800
ENSMUSG00000095195.8_10	chr14	-	1613	4	ISM	ENSMUSG00000095195.8	ENSMUST00000178728.2	1955	7	15452	8	15452	-8	3prime_fragment	FALSE	canonical	0	0	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACACAGCAGTGTATG	NA	False	NA	NA	False	AATAAA	-9	NA	18882298	18875560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_18876696_18880194_18880378_18881053_18881186_18882135
ENSMUSG00000095195.8_9	chr14	-	1712	5	Fusion	ENSMUSG00000096488.2_ENSMUSG00000095195.8	novel	1955	7	NA	NA	6	-8	multi-exon	FALSE	canonical	0	0	junction_3	1.6393596310755	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACACAGCAGTGTATG	NA	False	NA	NA	False	AATAAA	-9	NA	19057153	18875560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_-_18876696_18880194_18880378_18881053_18881186_18882135_18882299_19057054
ENSMUSG00000095199.9_7	chr2	+	7675	3	FSM	ENSMUSG00000095199.9	ENSMUST00000238365.2	753	3	-7	-6915	-7	2987	multi-exon	FALSE	canonical	3	25	junction_2	11	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	176212811	176228565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_176212909_176220781_176220909_176221114
ENSMUSG00000095199.9_8	chr2	+	6514	4	FSM	ENSMUSG00000095199.9	ENSMUST00000178443.2	1458	4	-29	-5027	1	2987	multi-exon	FALSE	canonical	3	10	junction_3	15.195028426722	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	176212819	176228565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_176212909_176220781_176220909_176221114_176221176_176222328
ENSMUSG00000095199.9_9	chr2	+	367	3	Fusion	ENSMUSG00000089951.9_ENSMUSG00000095199.9	novel	1127	3	NA	NA	-15	-385	multi-exon	FALSE	canonical	3	25	junction_2	21.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCACTGCTTTCAGTTATG	NA	False	NA	NA	False	NA	NA	NA	176115438	176221265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_+_176115528_176220781_176220909_176221114
ENSMUSG00000095253.5_0	chr17	-	2360	1	ISM	ENSMUSG00000095253.5	ENSMUST00000202988.4	6012	4	10658	1795	2597	-1789	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTAAGCACCGTGTAA	NA	False	NA	65	True	ACTAAA	-30	NA	33038577	33036217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_33036200_33038600
ENSMUSG00000095253.5_2	chr17	-	4097	4	FSM	ENSMUSG00000095253.5	ENSMUST00000202988.4	6012	4	37	1878	4	-1872	multi-exon	FALSE	canonical	3	24	junction_2	7.93025150224688	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGTTGTATCTTTGATT	NA	False	NA	-18	True	NA	NA	NA	33049198	33036300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33040074_33040751_33040813_33041047_33041175_33049062
ENSMUSG00000095253.5_3	chr17	-	4186	4	FSM	ENSMUSG00000095253.5	ENSMUST00000202759.2	374	4	19	-3831	1	-1792	multi-exon	FALSE	canonical	2	8	junction_2	14.4452991200136	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAAGACTAAGCACCGTG	NA	False	NA	62	True	ACTAAA	-27	NA	33049201	33036220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33040074_33040751_33040813_33041041_33041175_33049062
ENSMUSG00000095304.10_0	chr14	-	508	4	FSM	ENSMUSG00000095304.10	ENSMUST00000052286.16	1555	4	149	898	149	0	multi-exon	FALSE	canonical	3	143	junction_3	28.7170100579198	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25903375	25888827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25903209
ENSMUSG00000095304.10_6	chr14	-	902	4	FSM	ENSMUSG00000095304.10	ENSMUST00000183431.8	536	4	15	-381	15	381	multi-exon	TRUE	canonical	3	49	junction_3	71.4624998785299	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGATGCATTTCCAGTT	NA	False	NA	NA	False	NA	NA	NA	25902883	25888446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25902704
ENSMUSG00000095315.3_1	chr2	+	4118	4	FSM	ENSMUSG00000095315.3	ENSMUST00000238230.2	2159	4	57	-2016	57	2016	multi-exon	FALSE	canonical	3	122	junction_3	5.43650214343336	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAACAGAACGGAGGAGGT	NA	False	NA	-3	True	NA	NA	NA	150153407	150170948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_150153479_150165621_150165749_150165947_150166009_150167089
ENSMUSG00000095315.3_2	chr2	+	2030	3	NIC	ENSMUSG00000095315.3	novel	2159	4	NA	NA	55	-13	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	56.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAACAAAAAGCAGCACAT	NA	False	NA	NA	False	AATAAA	-7	NA	150153405	150168919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_150153479_150165621_150165749_150167089
ENSMUSG00000095315.3_9	chr2	+	1995	3	ISM	ENSMUSG00000095315.3	ENSMUST00000238230.2	2159	4	12270	37	-1	-37	3prime_fragment	FALSE	canonical	3	122	junction_2	6.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGATTAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	150165620	150168895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_150165749_150165947_150166009_150167089
ENSMUSG00000095325.4_1	chr17	-	2516	4	FSM	ENSMUSG00000095325.4	ENSMUST00000228075.3	5337	4	38	2783	-14	1860	multi-exon	FALSE	canonical	3	147	junction_3	10.4986771653491	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTCCTTTGTCATGG	NA	False	NA	-8	True	NA	NA	NA	33110578	33100975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_33103140_33104676_33104738_33104930_33105058_33110414
ENSMUSG00000095325.4_3	chr17	-	1638	1	ISM	ENSMUSG00000095325.4	ENSMUST00000228075.3	5337	4	8002	2784	2443	1859	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGTTCCTTTGTCATG	NA	False	NA	-9	True	NA	NA	NA	33102614	33100976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_33101000_33102600
ENSMUSG00000095339.3_0	chr7	-	2800	4	FSM	ENSMUSG00000095339.3	ENSMUST00000168158.3	1754	4	2	-1048	2	1048	multi-exon	FALSE	canonical	3	9	junction_1	2.62466929133727	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCGGTCTCAGTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	10638975	10633618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_10635707_10635790_10635951_10637767_10638240_10638895
ENSMUSG00000095362.8_1	chr2	-	4379	4	FSM	ENSMUSG00000095362.8	ENSMUST00000108939.9	1576	4	-5	-2798	-5	2798	multi-exon	FALSE	canonical	3	248	junction_1	217.946476609893	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	-6	True	NA	NA	NA	177482116	177470785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_177474890_177476043_177476105_177476312_177476440_177482029
ENSMUSG00000095362.8_2	chr2	-	1256	3	FSM	ENSMUSG00000095362.8	ENSMUST00000150650.2	310	3	13	-959	-5	959	multi-exon	FALSE	canonical	3	312	junction_1	213.5	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAATTCATAATTTAGT	NA	False	NA	NA	False	NA	NA	NA	177482116	177475062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_177476105_177476312_177476440_177482029
ENSMUSG00000095362.8_6	chr2	-	4377	4	Fusion	ENSMUSG00000078862.11_ENSMUSG00000095362.8	novel	1576	4	NA	NA	3	2796	multi-exon	FALSE	canonical	3	248	junction_1	248.393952332893	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTTGCTTCTTGGTCAT	NA	False	NA	-8	True	NA	NA	NA	177599087	177470787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr2_-_177474890_177476043_177476105_177476312_177476440_177599000
ENSMUSG00000095403.9_1	chr8	+	3194	4	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17359	-782	at_least_one_novel_splicesite	FALSE	non_canonical	3	44	junction_1	42.8096562315871	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATAAATATAAATATGT	5853	False	NA	NA	False	AATAAA	-7	NA	21090253	21122005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_21090445_21107448_21107822_21112754_21115301_21121921
ENSMUSG00000095403.9_17	chr8	+	3549	3	ISM	ENSMUSG00000095403.9	ENSMUST00000178995.3	955	5	5333	770	5333	-770	internal_fragment	FALSE	canonical	3	161	junction_1	223	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGTACGTGTGGCACC	NA	False	NA	NA	False	AATAAA	-19	NA	21112945	21122017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_21113054_21116684_21116805_21118696
ENSMUSG00000095403.9_2	chr8	+	3040	4	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17368	-778	at_least_one_novel_splicesite	FALSE	non_canonical	3	44	junction_1	99.6304281945141	33	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATATAAATATGTACGT	5844	False	NA	NA	False	AATAAA	-11	NA	21090244	21122009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_21090445_21107448_21107655_21112754_21115301_21121921
ENSMUSG00000095403.9_20	chr8	+	4422	2	ISM	ENSMUSG00000095403.9	ENSMUST00000178995.3	955	5	8079	782	8079	-782	internal_fragment	FALSE	canonical	3	607	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACATAAATATAAATATGT	NA	False	NA	NA	False	AATAAA	-7	NA	21115691	21122005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_21116805_21118696
ENSMUSG00000095403.9_8	chr8	+	1111	6	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17290	-200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	216.45082582425	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAGTAAAATAAAA	5922	False	NA	NA	False	AATGAA	-22	NA	21090322	21122587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_21090445_21107448_21107655_21112754_21113054_21116684_21116805_21118696_21118865_21122391
ENSMUSG00000095427.3_0	chr14	-	526	1	FSM	ENSMUSG00000095427.3	ENSMUST00000095471.6	855	1	372	-43	372	43	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAACAAACAAACAAA	NA	False	NA	NA	False	AATAAA	-17	NA	76474613	76474087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_76474100_76474600
ENSMUSG00000095432.10_0	chr13	-	4001	4	FSM	ENSMUSG00000095432.10	ENSMUST00000181892.9	5293	4	692	600	0	-600	multi-exon	FALSE	canonical	3	55	junction_1	6.68331255192114	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTCTTAGTCATGGCAT	NA	False	NA	-3	True	NA	NA	NA	67701257	67687359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67691030_67693442_67693539_67694743_67694871_67701149
ENSMUSG00000095432.10_5	chr13	-	2718	1	ISM	ENSMUSG00000095432.10	ENSMUST00000181892.9	5293	4	11869	603	11177	-603	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTATTTCTTAGTCATGG	NA	False	NA	-6	True	NA	NA	NA	67690080	67687362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67687400_67690100
ENSMUSG00000095432.10_7	chr13	-	1480	3	FSM	ENSMUSG00000095432.10	ENSMUST00000053289.11	700	3	0	-780	0	780	multi-exon	FALSE	canonical	3	60	junction_2	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGGAGAGTCTAGTTAT	NA	False	NA	NA	False	AATATA	-13	NA	67701257	67692293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67693539_67694743_67694871_67701149
ENSMUSG00000095440.3_0	chr15	-	2187	1	FSM	ENSMUSG00000095440.3	ENSMUST00000178140.2	4206	1	2000	19	2000	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTATGATGTGTGGCAT	NA	False	NA	-22	True	TTTAAA	-21	NA	100950280	100948093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100948100_100950300
ENSMUSG00000095463.9_1	chr14	+	2983	13	NNC	ENSMUSG00000095463.9	novel	3589	13	NA	NA	-6	466	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_8	28.7096334974091	127	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGACTTGACATTTTA	7295	False	NA	NA	False	AATAAA	-12	NA	69574616	69604131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_69574738_69584934_69585044_69586521_69586720_69588151_69588358_69591850_69592002_69592842_69592947_69594161_69594222_69594443_69594575_69596270_69596438_69599087_69599413_69601016_69601103_69601771_69601934_69602968
ENSMUSG00000095463.9_2	chr14	+	3007	13	FSM	ENSMUSG00000095463.9	ENSMUST00000184973.8	3589	13	-6	588	-6	466	multi-exon	FALSE	canonical	3	82	junction_8	36.1504379872038	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGACTTGACATTTTA	7295	False	NA	NA	False	AATAAA	-12	NA	69574616	69604131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_69574738_69584934_69585044_69586521_69586720_69588151_69588358_69591850_69592002_69592842_69592947_69594161_69594222_69594443_69594599_69596270_69596438_69599087_69599413_69601016_69601103_69601771_69601934_69602968
ENSMUSG00000095463.9_8	chr14	+	4678	12	NIC	ENSMUSG00000095463.9	novel	3589	13	NA	NA	-5	466	intron_retention	FALSE	canonical	3	160	junction_8	20.4692876167489	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGACTTGACATTTTA	7296	False	NA	NA	False	AATAAA	-12	NA	69574617	69604131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_69574738_69584934_69585044_69586521_69586720_69588151_69588358_69591850_69592002_69592842_69592947_69594161_69594222_69594443_69596438_69599087_69599413_69601016_69601103_69601771_69601934_69602968
ENSMUSG00000095464.2_0	chr16	+	3690	2	FSM	ENSMUSG00000046516.11	ENSMUST00000120495.2	3690	2	-13	13	-13	0	multi-exon	FALSE	canonical	3	3811	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAGAAGGAAAGAAA	NA	False	NA	-4	True	GATAAA	-25	NA	38167370	38173093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_38167570_38169602
ENSMUSG00000095526.3_0	chr6	+	429	1	FSM	ENSMUSG00000095526.3	ENSMUST00000117571.2	333	1	-61	-35	-61	35	mono-exon	FALSE	NA	NA	NA	NA	NA	1220	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	48500390	48500819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48500400_48500800
ENSMUSG00000095545.8_1	chr2	-	6513	4	FSM	ENSMUSG00000095545.8	ENSMUST00000179061.8	1458	4	-28	-5027	-28	4293	multi-exon	FALSE	canonical	3	10	junction_1	14.0079342596338	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	175495467	175479722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175485960_175487112_175487174_175487379_175487507_175495379
ENSMUSG00000095562.9_1	chrX	+	3497	8	NNC	ENSMUSG00000095562.9	novel	583	3	NA	NA	-390	-12	intron_retention	TRUE	non_canonical	0	0	junction_3	180.203626319715	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACTCCACAAGGTAGGAAG	NA	False	NA	NA	False	NA	NA	NA	168792264	168801779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_168792487_168792588_168792759_168793669_168794491_168797047_168797235_168797407_168797507_168797544_168797999_168800158_168801186_168801262
ENSMUSG00000095562.9_20	chrX	+	3490	7	NNC	ENSMUSG00000095562.9	novel	583	3	NA	NA	-390	-12	intron_retention	FALSE	non_canonical	0	0	junction_3	189.131935137588	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACTCCACAAGGTAGGAAG	NA	False	NA	NA	False	NA	NA	NA	168792264	168801779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_168792487_168792588_168792759_168793669_168794581_168797272_168797372_168797454_168797999_168800158_168801186_168801262
ENSMUSG00000095567.9_0	chr4	+	2579	19	FSM	ENSMUSG00000095567.9	ENSMUST00000179543.8	2785	19	12	194	12	-181	multi-exon	TRUE	canonical	0	0	junction_6	452.638591421947	2967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTTTGTTTGTTTTT	NA	False	NA	24	True	GATAAA	-19	NA	156320478	156331879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_156320528_156320611_156320783_156321799_156321975_156322056_156322186_156323638_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325171_156325769_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133_156331221_156331475
ENSMUSG00000095567.9_35	chr4	+	2534	18	ISM	ENSMUSG00000095567.9	ENSMUST00000179543.8	2785	19	141	194	141	-181	3prime_fragment	FALSE	canonical	0	0	junction_5	462.655409221227	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTTTGTTTGTTTTT	NA	False	NA	24	True	GATAAA	-19	NA	156320607	156331879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_156320783_156321799_156321975_156322056_156322186_156323638_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325171_156325769_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133_156331221_156331475
ENSMUSG00000095595.3_0	chr12	+	1383	5	FSM	ENSMUSG00000095595.3	ENSMUST00000177768.3	3922	5	27	2512	27	-2512	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACTGTGGATTTCCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	55171280	55186377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_55171508_55177400_55177575_55182452_55182520_55183902_55184001_55185560
ENSMUSG00000095595.3_2	chr12	+	3948	6	NNC	ENSMUSG00000095595.3	novel	3922	5	NA	NA	29	269	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	44.2067868092672	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTTATTGCAGTTT	NA	False	NA	NA	False	ATTAAA	-27	NA	55171282	55189158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_55171508_55177400_55177575_55182452_55182520_55183902_55184001_55185560_55188689_55188902
ENSMUSG00000095595.3_4	chr12	+	1190	3	NIC	ENSMUSG00000095595.3	novel	3922	5	NA	NA	52	-2515	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	60	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGCACTGTGGATTTCC	NA	False	NA	NA	False	AATAAA	-11	NA	55171305	55186374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_55171508_55177400_55177575_55185560
ENSMUSG00000095595.3_9	chr12	+	172	1	ISM	ENSMUSG00000095595.3	ENSMUST00000177768.3	3922	5	17436	28	17436	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55188689	55188861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_55188700_55188900
ENSMUSG00000095597.3_0	chrX	-	600	1	FSM	ENSMUSG00000095597.3	ENSMUST00000187973.2	582	1	16	-34	16	0	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	151693100	151692500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_151692500_151693100
ENSMUSG00000095621.2_0	chrX	+	2039	7	FSM	ENSMUSG00000095621.2	ENSMUST00000178169.2	2028	7	-14	3	-14	-3	multi-exon	TRUE	canonical	0	0	junction_1	6.67707520800338	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTTCTTTTTTGTGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	148230598	148270777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_148230705_148247706_148247833_148248551_148248632_148252302_148253262_148262449_148262532_148263337_148263388_148270141
ENSMUSG00000095648.8_0	chr2	-	4683	5	NNC	ENSMUSG00000095648.8	novel	1749	4	NA	NA	-3603	2785	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_3	46.0027173110459	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175895221	175880598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_175884942_175886096_175886158_175886363_175886491_175891615_175891671_175895124
ENSMUSG00000095648.8_1	chr2	-	4649	4	FSM	ENSMUSG00000095648.8	ENSMUST00000109049.10	1749	4	-115	-2785	-115	2785	multi-exon	FALSE	canonical	3	43	junction_3	45.7456737480897	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175891733	175880598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_175884942_175886096_175886158_175886363_175886491_175891615
ENSMUSG00000095648.8_2	chr2	-	1302	4	NNC	ENSMUSG00000095648.8	novel	195	3	NA	NA	-3617	944	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	52.563189485503	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGTTCCCATTTCATA	NA	False	NA	NA	False	NA	NA	NA	175895235	175885148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_-_175886158_175886363_175886491_175891615_175891671_175895124
ENSMUSG00000095661.2_1	chr3	+	2804	1	FSM	ENSMUSG00000095661.2	ENSMUST00000066794.9	2798	1	-30	24	-30	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTCAACAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	12920865	12923669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_12920900_12923700
ENSMUSG00000095661.2_2	chr3	+	2691	2	Genic_Genomic	ENSMUSG00000095661.2	novel	2798	1	NA	NA	-44	-24	multi-exon	FALSE	non_canonical	2	59	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTCAACAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	12920851	12923669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_+_12921085_12921211
ENSMUSG00000095677.3_0	chr17	-	651	1	ISM	ENSMUSG00000095677.3	ENSMUST00000232452.2	3545	4	6227	2339	6227	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTTTGTGTTCCTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	6916990	6916339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_6916300_6917000
ENSMUSG00000095677.3_2	chr17	-	2838	3	ISM	ENSMUSG00000095677.3	ENSMUST00000179554.3	771	5	3435	3	3353	-3	3prime_fragment	TRUE	canonical	3	7908	junction_1	367	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTTTGTGTTCCTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	6919864	6916339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_6916737_6917085_6917164_6917501
ENSMUSG00000095677.3_3	chr17	-	4462	2	NIC	ENSMUSG00000095677.3	novel	3545	4	NA	NA	-11	-9	intron_retention	FALSE	canonical	3	5415	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6923228	6916345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_6920752_6923172
ENSMUSG00000095677.3_8	chr17	-	691	5	FSM	ENSMUSG00000095677.3	ENSMUST00000179554.3	771	5	71	9	-11	-9	multi-exon	FALSE	canonical	3	5415	junction_4	1216.82506959711	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6923228	6916345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_6916737_6917085_6917164_6917501_6917626_6920709_6920752_6923172
ENSMUSG00000095687.3_0	chr17	-	273	1	NIC	ENSMUSG00000116988.2	novel	2610	13	NA	NA	18925	-45896	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGCTTTTTCTTGTGTG	NA	False	NA	-1	True	AAAAAG	-14	NA	8347695	8347422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_8347400_8347700
ENSMUSG00000095724.2_0	chr12	-	1831	2	FSM	ENSMUSG00000095724.2	ENSMUST00000164517.3	1863	2	0	32	0	-32	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATATGATTTCACTTTTC	NA	False	NA	NA	False	AATATA	-16	NA	87742525	87739226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_87740869_87742336
ENSMUSG00000095824.2_0	chr2	+	3183	2	NNC	ENSMUSG00000095824.2	novel	732	2	NA	NA	-787	578	intron_retention	FALSE	non_canonical	0	0	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGCTAATTTTCATTGT	1449	False	NA	NA	False	AATAAA	-19	NA	83814299	83818157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_83814324_83814998
ENSMUSG00000095824.2_3	chr2	+	3116	1	FSM	ENSMUSG00000095824.2	ENSMUST00000099948.3	2493	1	-45	-578	-45	578	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGCTAATTTTCATTGT	2191	False	NA	NA	False	AATAAA	-19	NA	83815041	83818157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_83815000_83818200
ENSMUSG00000095845.4_0	chr8	-	929	2	FSM	ENSMUSG00000095845.4	ENSMUST00000177563.2	328	2	-545	-56	-545	56	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTTGTGTGCTGAATGG	NA	False	NA	NA	False	AATAAA	-19	NA	85795156	85794140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_85794344_85794430
ENSMUSG00000095872.8_2	chrX	+	2041	7	FSM	ENSMUSG00000095872.8	ENSMUST00000178833.2	1350	7	-92	-599	-92	-2	multi-exon	TRUE	canonical	0	0	junction_3	6.15539510420646	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTTTGTTTGTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	146572631	146616450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_146572740_146589721_146589848_146590566_146590647_146594315_146595275_146608125_146608208_146609013_146609064_146615814
ENSMUSG00000095909.3_24	chr13	+	3153	5	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-29	1316	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	91.7234293951115	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	66261264	66271966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026_66269602_66269686
ENSMUSG00000095909.3_29	chr13	+	3238	4	FSM	ENSMUSG00000095909.3	ENSMUST00000238623.2	1525	4	-29	-1684	-29	1316	multi-exon	FALSE	canonical	3	113	junction_1	62.9620697104393	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	66261264	66271966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026
ENSMUSG00000095930.2_0	chr13	-	1231	3	ISM	ENSMUSG00000095930.2	ENSMUST00000178142.2	4103	4	28215	1828	10727	-1828	3prime_fragment	FALSE	canonical	3	6	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGTCTCTTAGCCTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	120189203	120173457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_120174332_120175643_120175913_120189115
ENSMUSG00000095930.2_1	chr13	-	2274	4	FSM	ENSMUSG00000095930.2	ENSMUST00000178142.2	4103	4	0	1829	0	-1829	multi-exon	FALSE	canonical	3	6	junction_2	3.55902608401044	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAAGTCTCTTAGCCTAA	NA	False	NA	NA	False	AATAAA	-24	NA	120217418	120173458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_120174332_120175643_120175913_120189115_120190060_120217230
ENSMUSG00000095936.4_0	chr7	-	2793	4	FSM	ENSMUSG00000095936.4	ENSMUST00000210521.2	1745	4	2	-1050	2	1050	multi-exon	FALSE	canonical	1	3	junction_3	9.89949493661167	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGAGTTCGGTCTC	NA	False	NA	NA	False	NA	NA	NA	11044607	11039254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_11041336_11041419_11041580_11043399_11043872_11044527
ENSMUSG00000095937.2_0	chr4	-	1253	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-71	-180	-71	180	mono-exon	FALSE	NA	NA	NA	NA	NA	2791	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	91740977	91739724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_91739700_91741000
ENSMUSG00000095941.4_0	chr8	+	1753	9	NIC	ENSMUSG00000095941.4	novel	1649	10	NA	NA	137	43	intron_retention	TRUE	canonical	3	15	junction_3	4.11551940828858	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTGGAGTACCGATTG	NA	False	NA	1	True	AATAAA	-8	NA	110827975	110838636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_110828167_110835615_110835726_110835834_110835858_110836017_110836077_110836409_110836623_110836712_110837295_110837438_110837593_110837930_110838005_110838289
ENSMUSG00000095941.4_1	chr8	+	1464	10	FSM	ENSMUSG00000095941.4	ENSMUST00000213641.2	1649	10	236	-51	236	51	multi-exon	FALSE	canonical	3	15	junction_3	3.97523195999963	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACCGATTGTGTGTTTC	NA	False	NA	9	True	AATAAA	-16	NA	110828074	110838644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_110828167_110835615_110835726_110835834_110835858_110836017_110836077_110836409_110836623_110836712_110836955_110837152_110837295_110837438_110837593_110837930_110838005_110838289
ENSMUSG00000095990.2_12	chr17	+	2675	4	FSM	ENSMUSG00000095990.2	ENSMUST00000147630.2	2684	4	13	-4	13	4	multi-exon	FALSE	canonical	3	169	junction_3	43.3615292883245	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCTTCTAAGGGATGCAA	NA	False	NA	NA	False	NA	NA	NA	17341689	17367097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720
ENSMUSG00000095990.2_13	chr17	+	2257	6	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	12	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	117.263122933001	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTCTAAGGGATGCAAC	NA	False	NA	NA	False	NA	NA	NA	17341688	17367098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366130_17366465_17366734_17366817
ENSMUSG00000095990.2_39	chr17	+	1408	1	Genic_Genomic	ENSMUSG00000095990.2	novel	NA	NA	NA	NA	24014	5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTCTAAGGGATGCAAC	NA	False	NA	NA	False	NA	NA	NA	17365690	17367098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_+_17365700_17367100
ENSMUSG00000095990.2_6	chr17	+	2693	4	Fusion	ENSMUSG00000095990.2_ENSMUSG00000096696.2	novel	2667	4	NA	NA	-33	5	multi-exon	FALSE	canonical	3	169	junction_3	41.6973220562984	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTCTAAGGGATGCAAC	NA	False	NA	NA	False	NA	NA	NA	17284341	17367098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_+_17284469_17362997_17363125_17363366_17363428_17364720
ENSMUSG00000096006.2_0	chr2	-	1260	1	FSM	ENSMUSG00000096006.2	ENSMUST00000178049.2	1316	1	51	5	51	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAGTTAAAAAAAAAAAAA	7211	False	NA	NA	False	AGTAAA	-14	NA	113751435	113750175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_113750200_113751400
ENSMUSG00000096014.2_0	chr8	+	3311	1	FSM	ENSMUSG00000096014.2	ENSMUST00000180353.2	4832	1	556	965	556	-965	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTATACTGTAGCAAATAT	6481	False	NA	NA	False	ATTAAA	-14	NA	12445850	12449161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_12445800_12449200
ENSMUSG00000096054.4_4	chr10	-	6969	31	NIC	ENSMUSG00000096054.4	novel	6990	32	NA	NA	-7	1	intron_retention	FALSE	canonical	2	5	junction_5	2.95221197673127	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTCTTTTCCTTGATTT	NA	False	NA	NA	False	ATTAAA	-17	NA	5500699	5286947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_5289386_5292153_5292295_5293357_5293523_5294794_5294963_5296820_5296986_5297821_5297931_5298540_5298750_5298928_5299088_5299256_5299392_5300864_5301030_5302051_5302211_5303814_5303989_5306676_5306821_5308333_5308487_5308940_5309106_5310673_5310877_5311484_5311582_5317490_5317660_5318191_5318305_5353840_5354006_5355424_5355563_5359763_5359872_5366789_5366900_5370379_5370577_5374203_5374383_5375667_5375761_5386738_5386823_5393139_5393236_5406806_5406869_5491947_5492213_5500458
ENSMUSG00000096054.4_9	chr10	-	5057	32	NIC	ENSMUSG00000096054.4	novel	27908	146	NA	NA	0	1	combination_of_known_junctions	TRUE	canonical	1	1	junction_1	3.35731918226005	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTCTTTTCCTTGATTT	NA	False	NA	NA	False	ATTAAA	-17	NA	5500678	5286947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_5287334_5289224_5289386_5292153_5292295_5293357_5293523_5294794_5294963_5296820_5296986_5297821_5297931_5298540_5298750_5298928_5299088_5299256_5299392_5300864_5301030_5302051_5302211_5303814_5303989_5306676_5306821_5308333_5308487_5308940_5309106_5310673_5310877_5311484_5311582_5317490_5317660_5318191_5318305_5353840_5354006_5355424_5355563_5359763_5359872_5366789_5366900_5370379_5370577_5374203_5374383_5375667_5375761_5386738_5386823_5393139_5393236_5406806_5406869_5491947_5492213_5500458
ENSMUSG00000096066.5_0	chr5	-	1865	4	FSM	ENSMUSG00000096066.5	ENSMUST00000201031.4	1848	4	0	-17	0	17	multi-exon	FALSE	canonical	0	0	junction_1	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGTCTGAGTAGAATAATA	NA	False	NA	NA	False	AATAAA	-35	NA	95420627	95416334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_95417221_95418116_95418708_95419160_95419475_95420553
ENSMUSG00000096111.8_1	chr15	+	2510	4	FSM	ENSMUSG00000096111.8	ENSMUST00000180309.2	561	4	-29	-1920	-29	1428	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATATTTTATGTGTATGA	8412	False	NA	NA	False	AATAAA	-11	NA	99829562	99852353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99829784_99830695_99830869_99831367_99831496_99850365
ENSMUSG00000096145.3_0	chr7	-	734	3	FSM	ENSMUSG00000096145.3	ENSMUST00000033074.8	748	3	12	2	12	0	multi-exon	FALSE	canonical	3	262	junction_2	18.5	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTGTAGCATATGTCTG	NA	False	NA	-13	True	AATAAA	-17	NA	127494777	127492236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127492664_127493676_127493787_127494580
ENSMUSG00000096154.3_0	chr4	+	2371	3	Fusion	ENSMUSG00000096154.3_ENSMUSG00000070618.11_ENSMUSG00000095409.2	novel	2056	3	NA	NA	-38	-20	intron_retention	FALSE	canonical	1	2	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAATAATAATACCA	NA	False	NA	NA	False	NA	NA	NA	143237874	143300348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr4_+_143237929_143281992_143282307_143298345
ENSMUSG00000096156.2_0	chr16	+	598	1	FSM	ENSMUSG00000096156.2	ENSMUST00000177820.2	1074	1	858	-382	858	382	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATATTTGTGTAGTTCAG	NA	False	NA	NA	False	NA	NA	NA	97292104	97292702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_97292100_97292700
ENSMUSG00000096188.2_0	chr8	-	3149	1	ISM	ENSMUSG00000096188.2	ENSMUST00000179802.2	7734	4	44448	20	44448	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAACAAACAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	105077991	105074842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_105074800_105078000
ENSMUSG00000096188.2_1	chr8	-	3623	2	NNC	ENSMUSG00000096188.2	novel	7734	4	NA	NA	43915	-20	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAACAAACAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	105078524	105074842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_105076861_105076919
ENSMUSG00000096188.2_3	chr8	-	7658	5	NNC	ENSMUSG00000096188.2	novel	7734	4	NA	NA	-3	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.8804124631572	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAACAAACAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	105122442	105074842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_105076861_105076919_105081924_105082893_105082993_105084329_105084507_105122082
ENSMUSG00000096188.2_4	chr8	-	7712	4	FSM	ENSMUSG00000096188.2	ENSMUST00000179802.2	7734	4	-3	25	-3	-25	multi-exon	FALSE	canonical	3	33	junction_2	2.49443825784929	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATATTAAAAAAACAAACAAA	NA	False	NA	NA	False	AATAAA	-6	NA	105122442	105074847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_105081924_105082893_105082993_105084329_105084507_105122082
ENSMUSG00000096199.3_0	chr12	+	561	2	FSM	ENSMUSG00000096199.3	ENSMUST00000179139.3	3840	2	26	3253	26	-3253	multi-exon	FALSE	canonical	3	212	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTACTACTATCATCATTA	NA	False	NA	NA	False	ATTAAA	-17	NA	4284052	4286697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_4284279_4286362
ENSMUSG00000096199.3_1	chr12	+	3875	2	NNC	ENSMUSG00000096199.3	novel	3840	2	NA	NA	375	-9	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTTCATTACCT	NA	False	NA	NA	False	AATAAA	-19	NA	4284401	4289941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_4284698_4286362
ENSMUSG00000096210.3_0	chr15	+	2042	1	FSM	ENSMUSG00000096210.3	ENSMUST00000180086.3	2055	1	2	11	2	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	598	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGAAAAAATCTGAGTGG	1149	False	NA	10	True	AATAAA	-6	NA	78912651	78914693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78912700_78914700
ENSMUSG00000096215.9_0	chr16	+	359	4	NIC	ENSMUSG00000096215.9	novel	382	4	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	19.6694913225759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCGAGTCTGGACTGT	NA	False	NA	8	True	NA	NA	NA	4825159	4826170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_4825190_4825607_4825753_4825835_4825919_4826069
ENSMUSG00000096215.9_2	chr16	+	419	4	FSM	ENSMUSG00000096215.9	ENSMUST00000185147.8	399	4	-27	7	9	-4	multi-exon	FALSE	canonical	3	31	junction_1	9.41629792788369	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAAGCCCGAGTCTGGA	NA	False	NA	4	True	NA	NA	NA	4825188	4826166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_4825283_4825607_4825753_4825835_4825919_4826069
ENSMUSG00000096255.3_0	chr17	+	691	5	FSM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	71	9	71	-9	multi-exon	TRUE	canonical	3	3024	junction_1	2440.4692555941	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6697581	6703686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295
ENSMUSG00000096255.3_3	chr17	+	4466	2	ISM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	69	9	69	-9	intron_retention	FALSE	canonical	3	3024	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	AATAAA	-7	NA	6697579	6703686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_6697638_6699278
ENSMUSG00000096299.4_1	chr6	+	405	4	NIC	ENSMUSG00000096299.4	novel	291	3	NA	NA	3	12	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	4.54606056566195	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAAGGTATTCAATATGG	NA	False	NA	NA	False	NA	NA	NA	149467590	149485166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_149467693_149483509_149483637_149483827_149483889_149485051
ENSMUSG00000096316.8_0	chr9	-	1312	5	FSM	ENSMUSG00000096316.8	ENSMUST00000178051.8	785	5	59	-586	59	586	multi-exon	FALSE	canonical	3	6	junction_3	2.6809513236909	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGCCTTTATTTTATT	NA	False	NA	NA	False	ATTAAA	-11	NA	99119233	99110842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_99111671_99114500_99114551_99116351_99116581_99118292_99118411_99119146
ENSMUSG00000096333.8_0	chr4	-	1322	6	FSM	ENSMUSG00000096333.8	ENSMUST00000107319.8	1324	6	-2	4	-2	0	multi-exon	TRUE	canonical	0	0	junction_3	1.67332005306815	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATAACTCTTTTCTTTTT	NA	False	NA	NA	False	AATAAA	-8	NA	73824192	73820147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_73820562_73820866_73821173_73822148_73822227_73822504_73822814_73823283_73823372_73824065
ENSMUSG00000096337.2_1	chr2	+	3182	2	NNC	ENSMUSG00000096337.2	novel	732	2	NA	NA	-786	578	intron_retention	FALSE	non_canonical	0	0	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGCTAATTTTCATTGT	1899	False	NA	NA	False	AATAAA	-19	NA	83808490	83812347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_83808514_83809188
ENSMUSG00000096337.2_4	chr2	+	3134	1	FSM	ENSMUSG00000096337.2	ENSMUST00000178533.2	2493	1	-65	-576	-65	576	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTAAGCTAATTTTCATT	2620	False	NA	NA	False	AATAAA	-17	NA	83809211	83812345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_83809200_83812300
ENSMUSG00000096356.4_0	chr9	+	177	1	ISM	ENSMUSG00000096356.4	ENSMUST00000217286.2	5673	2	2431	3440	1937	1078	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38028924	38029101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_38028900_38029100
ENSMUSG00000096370.9_0	chr19	-	929	1	Genic_Genomic	ENSMUSG00000096370.9	novel	NA	NA	NA	NA	58166	5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATCACCCAGTCTCTG	15	True	NA	NA	False	NA	NA	NA	4793864	4792935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_-_4792900_4793900
ENSMUSG00000096370.9_12	chr19	-	2814	6	Fusion	ENSMUSG00000094936.9_ENSMUSG00000006456.11	novel	1411	4	NA	NA	8116	-1	multi-exon	FALSE	canonical	1	6	junction_4	124.007419132889	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTATGTGTGCTTTGAGA	NA	False	NA	-5	True	AATAAA	-15	NA	4853424	4835181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr19_-_4835596_4837388_4838071_4842425_4842849_4843843_4844038_4851578_4851834_4852578
ENSMUSG00000096370.9_13	chr19	-	3599	6	Fusion	ENSMUSG00000094936.9_ENSMUSG00000006456.11	novel	1411	4	NA	NA	-7	-1	multi-exon	FALSE	canonical	3	27	junction_4	135.241413775515	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTATGTGTGCTTTGAGA	7807	False	NA	-5	True	AATAAA	-15	NA	4861620	4835181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr19_-_4835596_4837388_4838071_4842425_4842849_4843843_4844038_4852578_4854044_4861199
ENSMUSG00000096370.9_2	chr19	-	2436	3	NIC	ENSMUSG00000096370.9	novel	2590	3	NA	NA	39	0	intron_retention	FALSE	canonical	1	1	junction_1	17	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAAATCACCCAGT	7930	False	NA	NA	False	NA	NA	NA	4861497	4792940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4794896_4843854_4844038_4861199
ENSMUSG00000096370.9_20	chr19	-	3851	7	Fusion	ENSMUSG00000094936.9_ENSMUSG00000006456.11	novel	2610	4	NA	NA	-16	-2	multi-exon	TRUE	canonical	1	4	junction_3	162.365842056347	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGTATGTGTGCTTTGAG	7798	False	NA	-6	True	AATAAA	-14	NA	4861629	4835182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr19_-_4835596_4837388_4838071_4842425_4842849_4843854_4844038_4851578_4851834_4852578_4854044_4861199
ENSMUSG00000096370.9_25	chr19	-	3339	3	NIC	ENSMUSG00000096370.9	novel	2432	3	NA	NA	4	1055	intron_retention	FALSE	canonical	3	35	junction_2	17.5	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAATCATTAATAATTAAA	7800	False	NA	-47	True	NA	NA	NA	4861627	4840131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4842849_4843843_4844038_4861199
ENSMUSG00000096370.9_33	chr19	-	4511	7	Fusion	ENSMUSG00000094936.9_ENSMUSG00000006456.11	novel	1411	4	NA	NA	157	33	multi-exon	TRUE	canonical	1	6	junction_4	153.55672133341	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAACTGCTCTGCTCTGTC	8044	False	NA	NA	False	NA	NA	NA	4861383	4834287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr19_-_4835596_4837388_4838071_4842425_4842849_4843843_4844038_4851578_4851834_4852578_4854044_4861199
ENSMUSG00000096370.9_34	chr19	-	4841	4	NIC	ENSMUSG00000096370.9	novel	2432	3	NA	NA	4	1092	intron_retention	FALSE	canonical	3	27	junction_2	167.094783481312	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAATGTTATTTACCTGA	7800	False	NA	-10	True	NA	NA	NA	4861627	4840094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_4842849_4843843_4844038_4852578_4854044_4861199
ENSMUSG00000096370.9_5	chr19	-	4790	4	Fusion	ENSMUSG00000094936.9_ENSMUSG00000006456.11	novel	1411	4	NA	NA	-14	-5	intron_retention	FALSE	canonical	3	35	junction_3	18.3726850393609	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGAGCTGCTTTGTCTTGG	7800	False	NA	NA	False	AATAAA	-8	NA	4861627	4834325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr19_-_4838071_4842425_4842849_4843843_4844038_4861199
ENSMUSG00000096370.9_6	chr19	-	1884	5	Fusion	ENSMUSG00000094936.9_ENSMUSG00000006456.11	novel	1411	4	NA	NA	8791	-1	multi-exon	FALSE	canonical	3	27	junction_4	25.5281707139387	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTATGTGTGCTTTGAGA	NA	False	NA	-5	True	AATAAA	-15	NA	4852749	4835181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr19_-_4835596_4837388_4838071_4842425_4842849_4843843_4844038_4852578
ENSMUSG00000096370.9_7	chr19	-	2994	5	Fusion	ENSMUSG00000094936.9_ENSMUSG00000006456.11	novel	1411	4	NA	NA	-14	-8	multi-exon	FALSE	canonical	3	35	junction_4	22.3760474615156	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAAGAGCTGCTTTGTCT	7800	False	NA	NA	False	AATAAA	-5	NA	4861627	4834328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr19_-_4835596_4837388_4838071_4842425_4842849_4843843_4844038_4861199
ENSMUSG00000096401.3_13	chr8	+	4305	5	Fusion	ENSMUSG00000096401.3_ENSMUSG00000110458.2	novel	930	5	NA	NA	-86	-795	multi-exon	FALSE	canonical	3	200	junction_2	399.990234255788	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGTACGTGTGGCACCA	NA	False	NA	NA	False	AATAAA	-20	NA	20697898	20726471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717497_20721120_20721241_20723149
ENSMUSG00000096401.3_17	chr8	+	4138	5	Fusion	ENSMUSG00000096401.3_ENSMUSG00000110458.2	novel	930	5	NA	NA	-87	-796	multi-exon	FALSE	canonical	3	434	junction_2	317.198183317622	413	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGTACGTGTGGCACC	NA	False	NA	NA	False	AATAAA	-19	NA	20697897	20726470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149
ENSMUSG00000096401.3_91	chr8	+	3589	3	NNC	ENSMUSG00000096401.3	novel	930	5	NA	NA	5240	-802	at_least_one_novel_splicesite	FALSE	canonical	3	1117	junction_1	42	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATAAATATGTACGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	20717342	20726464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_20717497_20721120_20721241_20723149
ENSMUSG00000096401.3_95	chr8	+	3438	2	ISM	ENSMUSG00000096401.3	ENSMUST00000096485.6	930	5	9018	799	9018	-799	internal_fragment	FALSE	canonical	3	1201	junction_1	0	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAATATGTACGTGTGGC	NA	False	NA	NA	False	AATAAA	-16	NA	20721120	20726467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_20721241_20723149
ENSMUSG00000096403.3_0	chr6	-	1600	1	FSM	ENSMUSG00000096403.3	ENSMUST00000178598.3	843	1	-45	-712	-45	712	mono-exon	FALSE	NA	NA	NA	NA	NA	559	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	6	True	NA	NA	False	AATAAA	-17	NA	7983428	7981828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_7981800_7983400
ENSMUSG00000096433.3_1	chr17	-	4892	5	FSM	ENSMUSG00000096433.3	ENSMUST00000179996.3	4882	5	-11	1	-11	-1	multi-exon	TRUE	canonical	2	8	junction_3	10.6066017177982	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACTATTGAGTCCTTCA	NA	False	NA	NA	False	NA	NA	NA	22444608	22416246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_22420791_22421656_22421784_22424285_22424334_22442991_22443076_22444519
ENSMUSG00000096433.3_3	chr17	-	4807	4	NIC	ENSMUSG00000096433.3	novel	4882	5	NA	NA	-19	-10	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	4.18993502999218	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTTTAGATACTATTG	NA	False	NA	NA	False	NA	NA	NA	22444616	22416255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_22420791_22421656_22421784_22424285_22424334_22444519
ENSMUSG00000096433.3_5	chr17	-	2105	1	ISM	ENSMUSG00000096433.3	ENSMUST00000179996.3	4882	5	26223	24	26223	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATAAAACACTCTGTG	NA	False	NA	NA	False	NA	NA	NA	22418374	22416269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_22416300_22418400
ENSMUSG00000096438.4_0	chrY	+	459	1	FSM	ENSMUSG00000096438.4	ENSMUST00000180966.2	1002	1	723	-180	723	180	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAATAAATAAAT	NA	False	NA	NA	False	AATAAA	-14	NA	38575850	38576309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrY_+_38575800_38576300
ENSMUSG00000096446.2_2	chr14	+	3205	4	NIC	ENSMUSG00000096446.2	novel	1761	5	NA	NA	-1054	-338	intron_retention	TRUE	canonical	1	2	junction_1	7.54247233265651	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	42957003	42972309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_42959105_42966542_42966675_42967358_42967541_42971519
ENSMUSG00000096446.2_3	chr14	+	754	1	ISM	ENSMUSG00000096446.2	ENSMUST00000168165.2	1761	5	13498	338	13498	-338	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	42971555	42972309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_42971600_42972300
ENSMUSG00000096458.8_0	chr12	-	1757	2	FSM	ENSMUSG00000096458.8	ENSMUST00000178384.2	1284	2	18	-491	2	491	multi-exon	FALSE	canonical	3	30	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATTTGATCTTTG	NA	False	NA	-30	True	AATAAA	-9	NA	102709902	102707997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_102709654_102709801
ENSMUSG00000096458.8_1	chr12	-	1807	2	FSM	ENSMUSG00000096458.8	ENSMUST00000173760.9	1312	2	2	-497	2	497	multi-exon	FALSE	canonical	2	4	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTGATCTTTGTATACA	NA	False	NA	-24	True	AATAAA	-15	NA	102709902	102707991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_102709654_102709757
ENSMUSG00000096472.3_0	chr9	-	1176	2	FSM	ENSMUSG00000096472.3	ENSMUST00000215619.2	1423	2	190	57	35	-1	multi-exon	FALSE	canonical	3	236	junction_1	0	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAATTGTTTTGTGTG	NA	False	NA	NA	False	TATAAA	-17	NA	21202414	21199762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_21200629_21202104
ENSMUSG00000096472.3_1	chr9	-	418	1	ISM	ENSMUSG00000096472.3	ENSMUST00000215619.2	1423	2	2425	56	2270	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAATTGTTTTGTGTGA	NA	False	NA	NA	False	TATAAA	-18	NA	21200179	21199761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_21199800_21200200
ENSMUSG00000096484.2_0	chr2	+	3073	2	NNC	ENSMUSG00000096484.2	novel	732	2	NA	NA	-786	469	intron_retention	FALSE	non_canonical	0	0	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAAAAAAATGGATGACA	NA	False	NA	NA	False	AATAAA	-17	NA	83802680	83806428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_83802704_83803378
ENSMUSG00000096484.2_3	chr2	+	2963	1	FSM	ENSMUSG00000096484.2	ENSMUST00000180347.2	2493	1	-3	-467	-3	467	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTGAAAAAAAAATGGATGA	NA	False	NA	NA	False	AATAAA	-15	NA	83803463	83806426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_83803500_83806400
ENSMUSG00000096508.8_0	chrX	+	3668	5	FSM	ENSMUSG00000096508.8	ENSMUST00000113172.8	3677	5	25	-16	25	16	multi-exon	FALSE	canonical	3	153	junction_2	40.2336923485777	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCATGAGATTCATTTA	NA	False	NA	NA	False	AGTAAA	-16	NA	134334608	134344595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134334711_134334908_134335036_134339279_134339580_134340880_134341466_134342041
ENSMUSG00000096508.8_1	chrX	+	3812	5	FSM	ENSMUSG00000096508.8	ENSMUST00000179953.2	3519	5	24	-317	24	167	multi-exon	FALSE	canonical	3	42	junction_2	73.4825659595526	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134334607	134344746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_134334711_134334908_134335028_134339279_134339580_134340880_134341466_134342041
ENSMUSG00000096508.8_17	chrX	+	3567	4	ISM	ENSMUSG00000096508.8	ENSMUST00000113172.8	3677	5	324	-16	324	16	3prime_fragment	FALSE	canonical	3	153	junction_1	3.39934634239519	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCATGAGATTCATTTA	NA	False	NA	NA	False	AGTAAA	-16	NA	134334907	134344595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_134335036_134339279_134339580_134340880_134341466_134342041
ENSMUSG00000096508.8_18	chrX	+	3259	2	ISM	ENSMUSG00000096508.8	ENSMUST00000113172.8	3677	5	6328	-167	6328	167	3prime_fragment	FALSE	canonical	3	161	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134340911	134344746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_134341466_134342041
ENSMUSG00000096508.8_6	chrX	+	2147	1	Genic_Genomic	ENSMUSG00000096508.8	novel	NA	NA	NA	NA	8016	167	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134342599	134344746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_134342600_134344700
ENSMUSG00000096549.10_0	chr17	-	1124	6	NIC	ENSMUSG00000096549.10	novel	686	4	NA	NA	-8	-2	combination_of_known_junctions	TRUE	canonical	1	1	junction_2	1.83303027798234	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGGTATAAGGCGTGGTT	NA	False	NA	NA	False	NA	NA	NA	48005669	48000504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_48000800_48000982_48001187_48001498_48001637_48002281_48002390_48003259_48003405_48005435
ENSMUSG00000096574.8_1	chr14	-	1749	5	NIC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-49	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1.6393596310755	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCAGTGTATGCT	NA	False	NA	NA	False	AATAAA	-11	NA	19137195	19114979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19137061
ENSMUSG00000096574.8_22	chr14	-	1868	6	NIC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-49	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1.54919333848297	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGTGTATGCTTCTGC	NA	False	NA	NA	False	AATAAA	-16	NA	19137195	19114974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19135569_19135684_19137061
ENSMUSG00000096574.8_3	chr14	-	1961	7	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	2	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.46249406456535	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACACAGCAGTGTATG	NA	False	NA	NA	False	AATAAA	-9	NA	19137144	19114981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19132241_19132393_19135569_19135684_19137061
ENSMUSG00000096617.4_0	chr5	+	1251	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-71	-178	-71	178	mono-exon	FALSE	NA	NA	NA	NA	NA	1754	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	96009501	96010752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_96009500_96010800
ENSMUSG00000096687.9_0	chr10	-	6893	4	ISM	ENSMUSG00000096687.9	ENSMUST00000178045.9	3990	5	2	12	2	-12	intron_retention	FALSE	canonical	2	4	junction_3	5.43650214343336	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGTGTGACTGTTGAC	NA	False	NA	NA	False	AATAAA	-14	NA	39775209	39766020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_39768926_39770011_39770129_39770767_39770937_39771507
ENSMUSG00000096687.9_1	chr10	-	3984	5	FSM	ENSMUSG00000096687.9	ENSMUST00000178045.9	3990	5	4	2	4	-2	multi-exon	FALSE	canonical	0	0	junction_4	6.80073525436772	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTTGACTGCTTTGTAG	NA	False	NA	NA	False	AATAAA	-24	NA	39775207	39766010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_39768926_39770011_39770129_39770767_39770937_39771507_39771993_39774909
ENSMUSG00000096687.9_3	chr10	-	3508	4	FSM	ENSMUSG00000096687.9	ENSMUST00000178563.3	3528	4	13	7	-10	-7	multi-exon	FALSE	canonical	2	5	junction_3	4.98887651569859	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGACTGTTGACTGCTT	NA	False	NA	NA	False	AATAAA	-19	NA	39775221	39766015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_39768926_39770011_39770129_39770767_39770937_39774909
ENSMUSG00000096687.9_4	chr10	-	1457	1	ISM	ENSMUSG00000096687.9	ENSMUST00000178045.9	3990	5	7740	6	7035	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGACTGTTGACTGCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	39767471	39766014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_39766000_39767500
ENSMUSG00000096687.9_5	chr10	-	3148	3	ISM	ENSMUSG00000096687.9	ENSMUST00000178045.9	3990	5	4323	7	3618	-7	3prime_fragment	FALSE	canonical	2	13	junction_1	2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGACTGTTGACTGCTT	NA	False	NA	NA	False	AATAAA	-19	NA	39770888	39766015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_39768926_39770011_39770129_39770767
ENSMUSG00000096696.2_10	chr17	+	2684	4	FSM	ENSMUSG00000096696.2	ENSMUST00000127027.2	2667	4	-24	7	-24	-7	multi-exon	FALSE	canonical	3	176	junction_3	31.9826341768293	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTCTAAGGGATGCAAC	NA	False	NA	NA	False	NA	NA	NA	17284350	17309883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505
ENSMUSG00000096696.2_24	chr17	+	1232	1	ISM	ENSMUSG00000096696.2	ENSMUST00000127027.2	2667	4	24274	10	24274	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACCTTCTAAGGGATGC	NA	False	NA	NA	False	NA	NA	NA	17308648	17309880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_17308600_17309900
ENSMUSG00000096696.2_8	chr17	+	2241	6	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-2	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	105.978110947497	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCTTCTAAGGGATGCAA	NA	False	NA	NA	False	NA	NA	NA	17284372	17309882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308915_17309250_17309519_17309602
ENSMUSG00000096696.2_9	chr17	+	2423	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-16	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	95.1955224787385	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCTTCTAAGGGATGCAA	NA	False	NA	NA	False	NA	NA	NA	17284358	17309882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308923_17309174
ENSMUSG00000096718.3_0	chr10	-	2873	5	NNC	ENSMUSG00000096718.3	novel	4067	4	NA	NA	-31	-1286	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	5.06828373317832	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGATAATTATATACTGC	4815	False	NA	NA	False	AATAAA	-12	NA	81766345	81739030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_81741500_81742039_81742101_81742300_81742428_81746721_81746858_81766265
ENSMUSG00000096718.3_1	chr10	-	2742	4	NNC	ENSMUSG00000096718.3	novel	4067	4	NA	NA	-31	-1281	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	2.35702260395516	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTATATACTGCCATCC	4815	False	NA	NA	False	AATAAA	-17	NA	81766345	81739025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_81741500_81742039_81742101_81742300_81742428_81766265
ENSMUSG00000096718.3_2	chr10	-	942	1	ISM	ENSMUSG00000096718.3	ENSMUST00000219144.2	4067	4	26346	1282	6765	-1282	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAATTATATACTGCCATC	NA	False	NA	NA	False	AATAAA	-16	NA	81739968	81739026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_81739000_81740000
ENSMUSG00000096729.2_0	chr2	+	3071	2	NNC	ENSMUSG00000096729.2	novel	732	2	NA	NA	-786	467	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTGAAAAAAAAATGGATGA	NA	False	NA	NA	False	AATAAA	-15	NA	83796870	83800616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_83796894_83797568
ENSMUSG00000096729.2_1	chr2	+	3005	1	FSM	ENSMUSG00000096729.2	ENSMUST00000099951.3	2493	1	-85	-427	-85	427	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAAGTCTTATGTTTTGTG	NA	False	NA	NA	False	CATAAA	-21	NA	83797571	83800576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_83797600_83800600
ENSMUSG00000096740.9_1	chr19	+	1769	1	ISM	ENSMUSG00000096740.9	ENSMUST00000187504.7	3164	6	7127	0	1581	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTTTTGTTTTTTTT	NA	False	NA	15	True	NA	NA	NA	8868222	8869991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8868200_8870000
ENSMUSG00000096768.9_162	chrY	+	1135	3	ISM	ENSMUSG00000096768.9	ENSMUST00000177591.2	774	4	-359	0	172	0	intron_retention	FALSE	canonical	3	607	junction_1	708	233	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAGATGTGTGTGTGT	4297	False	NA	NA	False	AATAAA	-17	NA	90796351	90827733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrY_+_90797249_90804564_90804687_90827617
ENSMUSG00000096768.9_5	chrY	+	1007	5	NNC	ENSMUSG00000096768.9	novel	708	5	NA	NA	-540	0	intron_retention	FALSE	canonical	3	234	junction_2	696.056211810512	343	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAGATGTGTGTGTGT	3412	False	NA	NA	False	AATAAA	-17	NA	90795466	90827733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrY_+_90795676_90795777_90795948_90796858_90797249_90804564_90804687_90827617
ENSMUSG00000096780.8_1	chr17	-	4408	18	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10119	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	314.033178772948	284	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTGTATGAGACTTTT	2349	False	NA	-8	True	AATAAA	-39	NA	6744540	6705932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6716915_6717851_6717874_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ENSMUSG00000096780.8_76	chr17	-	985	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10119	-15115	at_least_one_novel_splicesite	FALSE	canonical	3	324	junction_3	195.078670028273	179	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTAGTTTGGCCTGTTT	2349	False	NA	NA	False	AAAAAG	-13	NA	6744540	6723915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ENSMUSG00000096788.9_1	chrX	+	796	4	FSM	ENSMUSG00000096788.9	ENSMUST00000072167.10	799	4	2	1	2	-1	multi-exon	FALSE	canonical	3	15	junction_3	24.1246761636296	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATATTTGTTTTGTGCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	36712106	36723465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36712216_36712377_36712790_36720942_36720989_36723236
ENSMUSG00000096788.9_2	chrX	+	845	5	FSM	ENSMUSG00000096788.9	ENSMUST00000184746.2	735	5	-20	-90	2	-1	multi-exon	FALSE	canonical	1	2	junction_3	31.4523449046331	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATATTTGTTTTGTGCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	36712106	36723465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_36712216_36712377_36712790_36720942_36720989_36721255_36721305_36723236
ENSMUSG00000096788.9_5	chrX	+	761	3	ISM	ENSMUSG00000096788.9	ENSMUST00000072167.10	799	4	195	5	173	-5	3prime_fragment	FALSE	canonical	3	15	junction_2	21	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCATATATTTGTTTTGTG	NA	False	NA	NA	False	AATAAA	-11	NA	36712299	36723461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_36712790_36720942_36720989_36723236
ENSMUSG00000096795.5_0	chr10	+	2374	4	FSM	ENSMUSG00000096795.5	ENSMUST00000200889.4	2384	4	-2	12	-2	-12	multi-exon	FALSE	canonical	3	15	junction_1	8.5764535535124	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAATGATATTTATA	NA	False	NA	NA	False	AATAAA	-11	NA	81540656	81557798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81540735_81554752_81554880_81555078_81555140_81555690
ENSMUSG00000096795.5_3	chr10	+	2554	5	FSM	ENSMUSG00000096795.5	ENSMUST00000201819.4	771	5	-82	-1701	-29	-7	multi-exon	FALSE	canonical	0	0	junction_1	15.6584641647896	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGATATTTATACTGCC	NA	False	NA	NA	False	AATAAA	-16	NA	81540629	81557803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81540735_81554302_81554451_81554752_81554880_81555078_81555140_81555690
ENSMUSG00000096834.8_0	chrX	+	1992	8	NNC	ENSMUSG00000096834.8	novel	2026	7	NA	NA	-16	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.91146098219174	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTTTTTTTGTGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	147446577	147486843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chrX_+_147446686_147463739_147463866_147464585_147464666_147468313_147469041_147469088_147469273_147478430_147478513_147479317_147479368_147486208
ENSMUSG00000096834.8_1	chrX	+	2039	7	FSM	ENSMUSG00000096834.8	ENSMUST00000101186.10	2026	7	-16	3	-16	-3	multi-exon	TRUE	canonical	0	0	junction_1	5.30461015427985	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTTCTTTTTTTGTGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	147446577	147486842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_147446686_147463739_147463866_147464585_147464666_147468313_147469273_147478430_147478513_147479317_147479368_147486208
ENSMUSG00000096847.3_0	chr17	-	2195	1	ISM	ENSMUSG00000096847.3	ENSMUST00000180252.3	4839	3	5526	5	5526	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTCTGCTCCCTCAGTG	NA	False	NA	-16	True	AATAAA	-15	NA	45855077	45852882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_45852900_45855100
ENSMUSG00000096847.3_2	chr17	-	4851	3	FSM	ENSMUSG00000096847.3	ENSMUST00000180252.3	4839	3	-21	9	-21	-9	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCACTGGTCTGCTCCCTC	NA	False	NA	-20	True	AATAAA	-11	NA	45860624	45852886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_45856881_45857686_45858128_45860208
ENSMUSG00000096856.8_0	chr10	+	2138	4	FSM	ENSMUSG00000096856.8	ENSMUST00000189672.7	4735	4	2	2595	2	535	multi-exon	FALSE	canonical	2	7	junction_1	17.4610678049451	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAATGATATACTGC	NA	False	NA	NA	False	AATAAA	-11	NA	81484894	81500600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81485001_81497831_81497959_81498158_81498220_81498756
ENSMUSG00000096856.8_6	chr10	+	178	1	ISM	ENSMUSG00000096856.8	ENSMUST00000189672.7	4735	4	15467	2658	2528	472	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAATTGTCATTCAA	NA	False	NA	NA	False	NA	NA	NA	81500359	81500537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_+_81500400_81500500
ENSMUSG00000096883.3_0	chr15	-	1859	4	NNC	ENSMUSG00000096883.3	novel	2588	4	NA	NA	-16	238	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	36.3807030657127	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGGGATCGATCATCAG	NA	False	NA	-8	True	AATAAA	-22	NA	82097032	82091156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_82091792_82091951_82092099_82092663_82092798_82096089
ENSMUSG00000096883.3_1	chr15	-	1821	4	FSM	ENSMUSG00000096883.3	ENSMUST00000179269.3	2588	4	-21	788	-21	238	multi-exon	FALSE	canonical	3	79	junction_3	2.62466929133727	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGGGATCGATCATCAG	NA	False	NA	-8	True	AATAAA	-22	NA	82097037	82091156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_82091749_82091951_82092099_82092663_82092798_82096089
ENSMUSG00000096883.3_2	chr15	-	2394	3	NIC	ENSMUSG00000096883.3	novel	2588	4	NA	NA	-27	240	intron_retention	FALSE	canonical	3	79	junction_2	2.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGGATCGATCATCAGTC	NA	False	NA	-6	True	AATAAA	-24	NA	82097043	82091154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_82091749_82091951_82092798_82096089
ENSMUSG00000096883.3_5	chr15	-	2028	3	NIC	ENSMUSG00000096883.3	novel	2588	4	NA	NA	-27	236	intron_retention	FALSE	canonical	3	79	junction_2	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAAGGGGATCGATCATC	NA	False	NA	-10	True	AATAAA	-20	NA	82097043	82091158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_82092099_82092663_82092798_82096089
ENSMUSG00000096904.8_23	chr14	+	887	1	ISM	ENSMUSG00000096904.8	ENSMUST00000164408.8	1745	5	5763	6	5763	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCAGTGTATGCT	NA	False	NA	NA	False	AATAAA	-11	NA	16063053	16063940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_16063100_16063900
ENSMUSG00000096904.8_3	chr14	+	1962	7	NNC	ENSMUSG00000096904.8	novel	1745	5	NA	NA	-14629	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9.46337971105226	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCAGTGTATGCT	NA	False	NA	NA	False	AATAAA	-11	NA	16042661	16063940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_16042755_16044129_16044244_16047431_16047583_16058159_16058323_16059272_16059405_16060080_16060263_16062813
ENSMUSG00000096904.8_5	chr14	+	1689	5	NNC	ENSMUSG00000096904.8	novel	1745	5	NA	NA	-14621	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	10.6624340560681	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACAGCAGTGTATGCT	NA	False	NA	NA	False	AATAAA	-11	NA	16042669	16063940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_16042755_16058159_16058323_16059272_16059405_16060080_16060263_16062813
ENSMUSG00000096904.8_6	chr14	+	2103	8	NNC	ENSMUSG00000096904.8	novel	1745	5	NA	NA	-14637	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9.16292440618547	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACACAGCAGTGTATG	NA	False	NA	NA	False	AATAAA	-9	NA	16042653	16063938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_16042755_16044129_16044244_16047431_16047583_16057290_16057426_16058159_16058323_16059272_16059405_16060080_16060263_16062813
ENSMUSG00000096910.3_0	chr17	+	3194	4	FSM	ENSMUSG00000096910.3	ENSMUST00000099414.5	5788	4	10	2584	10	490	multi-exon	FALSE	canonical	3	48	junction_3	21.7613316585993	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACATAAAATATAGTCG	NA	False	NA	-6	True	AATAAA	-13	NA	33508527	33523631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_33508644_33519554_33519682_33519918_33519977_33520738
ENSMUSG00000096910.3_1	chr17	+	3430	3	NIC	ENSMUSG00000096910.3	novel	5788	4	NA	NA	11	490	intron_retention	FALSE	canonical	3	48	junction_2	25	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACATAAAATATAGTCG	NA	False	NA	-6	True	AATAAA	-13	NA	33508528	33523631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_33508644_33519554_33519977_33520738
ENSMUSG00000096910.3_4	chr17	+	3308	1	ISM	ENSMUSG00000096910.3	ENSMUST00000099414.5	5788	4	13747	643	930	-643	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACATATGTAAATGAAATA	NA	False	NA	NA	False	NA	NA	NA	33522264	33525572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_33522300_33525600
ENSMUSG00000096916.8_0	chr7	-	2512	1	ISM	ENSMUSG00000096916.8	ENSMUST00000180502.8	6163	6	24535	2215	-3784	1643	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGAATTGTGAGTCCATT	NA	False	NA	-10	True	AATAAA	-18	NA	27689005	27686493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_27686500_27689000
ENSMUSG00000096916.8_1	chr7	-	3979	6	FSM	ENSMUSG00000096916.8	ENSMUST00000180502.8	6163	6	-39	2223	-39	1635	multi-exon	FALSE	canonical	3	64	junction_5	35.6482818660311	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAGGATTTGAATTGTG	NA	False	NA	-18	True	AATAAA	-10	NA	27713579	27686501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27711760_27711876_27713440
ENSMUSG00000096916.8_16	chr7	-	3862	5	NIC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-40	1632	combination_of_known_splicesites	FALSE	canonical	3	5	junction_4	64.0722248716244	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTAAAGGATTTGAATT	NA	False	NA	-21	True	AATAAA	-7	NA	27713580	27686504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27713440
ENSMUSG00000096916.8_2	chr7	-	4138	7	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-40	1638	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_3	44.8578000154067	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGATTTGAATTGTGAGT	NA	False	NA	-15	True	AATAAA	-13	NA	27713580	27686498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_27689948_27704643_27704743_27704891_27705052_27706738_27706866_27707808_27707862_27711760_27711876_27713445
ENSMUSG00000096916.8_6	chr7	-	4130	7	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-33	1632	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_3	46.6491038380041	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTAAAGGATTTGAATT	NA	False	NA	-21	True	AATAAA	-7	NA	27713573	27686504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_27689948_27704643_27704743_27704891_27705052_27706738_27706866_27707808_27707862_27711760_27711876_27713440
ENSMUSG00000096916.8_7	chr7	-	3978	6	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-40	1638	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	28.6454184818445	139	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGATTTGAATTGTGAGT	NA	False	NA	-15	True	AATAAA	-13	NA	27713580	27686498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27711760_27711876_27713445
ENSMUSG00000096917.3_0	chr8	+	439	3	FSM	ENSMUSG00000096917.3	ENSMUST00000180690.2	2618	3	32	2147	32	-1	multi-exon	FALSE	canonical	3	58	junction_1	45.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACACTCCTGCTTCTTTCA	NA	False	NA	8	True	NA	NA	NA	57941119	57959764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_57941228_57943373_57943502_57959561
ENSMUSG00000096917.3_3	chr8	+	576	3	NNC	ENSMUSG00000096917.3	novel	2618	3	NA	NA	2286	1384	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	59	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCAGTCTATTGGTTTT	NA	False	NA	13	True	NA	NA	NA	57943373	57963295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_57943502_57959561_57959836_57963121
ENSMUSG00000096917.3_5	chr8	+	3900	2	ISM	ENSMUSG00000096917.3	ENSMUST00000180690.2	2618	3	2242	-1378	2242	1378	3prime_fragment	FALSE	canonical	3	149	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATAGATTCAGTCTATT	NA	False	NA	7	True	NA	NA	NA	57943329	57963289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_57943502_57959561
ENSMUSG00000096935.6_0	chr3	-	935	3	FSM	ENSMUSG00000096935.6	ENSMUST00000181837.3	987	3	50	2	-29	-2	multi-exon	FALSE	canonical	2	3	junction_2	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTGCATTTCTTTCTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	88085042	88078864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_88079566_88083157_88083243_88084893
ENSMUSG00000096942.2_0	chr12	+	510	1	FSM	ENSMUSG00000096942.2	ENSMUST00000181233.2	438	1	-35	-37	-35	37	mono-exon	FALSE	NA	NA	NA	NA	NA	2633	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	AATAAA	-14	NA	110864512	110865022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_110864500_110865000
ENSMUSG00000096964.2_0	chr1	-	759	1	FSM	ENSMUSG00000096964.2	ENSMUST00000180900.2	204	1	-150	-405	9	405	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTGTGTGGTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	170083299	170082540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_170082500_170083300
ENSMUSG00000096966.3_0	chrX	-	3711	2	Genic_Genomic	ENSMUSG00000096966.3	novel	2298	1	NA	NA	-2981	1250	multi-exon	FALSE	canonical	3	30	junction_1	0	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGTCTCACCACTTCC	NA	False	NA	-2	True	AATAAA	-16	NA	72445323	72438794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_72442387_72445204
ENSMUSG00000096966.3_1	chrX	-	3880	3	Genic_Genomic	ENSMUSG00000096966.3	novel	2298	1	NA	NA	-2983	1249	multi-exon	FALSE	canonical	0	0	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGTGTCTCACCACTTC	NA	False	NA	-3	True	AATAAA	-15	NA	72445325	72438795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_72442387_72444166_72444335_72445204
ENSMUSG00000096968.2_0	chr1	+	2033	1	FSM	ENSMUSG00000096968.2	ENSMUST00000180542.2	817	1	-1213	-3	-1213	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGGTATTACTCAGCCAT	1621	False	NA	NA	False	NA	NA	NA	170711420	170713453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_170711400_170713500
ENSMUSG00000096981.3_0	chr9	+	1368	2	ISM	ENSMUSG00000096981.3	ENSMUST00000180419.2	1415	3	5136	-4	5136	4	3prime_fragment	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCATCTATGTGAAATGG	NA	False	NA	8	True	AATAAA	-16	NA	21987463	21997422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_21987648_21996238
ENSMUSG00000096988.2_0	chr17	-	1103	1	Genic_Genomic	ENSMUSG00000096988.2	novel	NA	NA	NA	NA	21982	440	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTTCTGTCTCCCAGCT	NA	False	NA	NA	False	NA	NA	NA	69724317	69723214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_69723200_69724300
ENSMUSG00000096992.4_0	chr1	-	153	1	FSM	ENSMUSG00000096992.4	ENSMUST00000187268.2	3416	1	3253	10	3078	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	34214274	34214121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_34214100_34214300
ENSMUSG00000096995.3_0	chr12	-	924	1	ISM	ENSMUSG00000096995.3	ENSMUST00000180698.3	1954	2	1160	2	1098	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTGTTTCTGGCTTGA	NA	False	NA	NA	False	ATTAAA	-21	NA	111539676	111538752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_111538800_111539700
ENSMUSG00000097000.3_0	chr8	+	2073	2	FSM	ENSMUSG00000097000.3	ENSMUST00000181452.2	2994	2	10	911	0	-911	multi-exon	FALSE	canonical	3	10	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAGCTTTTACAGCCCA	NA	False	NA	NA	False	AATAAA	-12	NA	73246787	73258432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_73246895_73256466
ENSMUSG00000097006.8_0	chr17	+	4768	2	ISM	ENSMUSG00000097006.8	ENSMUST00000180547.2	1709	3	-119	-2850	-18	-8	intron_retention	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAAGGTATATTTACGGT	NA	False	NA	NA	False	NA	NA	NA	23968191	23973031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_23968502_23968573
ENSMUSG00000097006.8_1	chr17	+	3068	1	NIC	ENSMUSG00000097006.8	novel	3162	3	NA	NA	1633	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAACAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	23969943	23973011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_23969900_23973000
ENSMUSG00000097023.9_1	chr7	+	2029	4	FSM	ENSMUSG00000097023.9	ENSMUST00000182317.2	479	4	-231	-1319	-28	-13	multi-exon	FALSE	canonical	2	3	junction_1	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACAGTCAAGTGTGTT	NA	False	NA	NA	False	AATAAA	-3	NA	79164951	79182326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79165421_79173664_79173725_79177510_79177618_79180933
ENSMUSG00000097039.9_13	chr15	+	2789	7	NIC	ENSMUSG00000097039.9	novel	2798	7	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	9.3392838174146	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTAAGCGTGATTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	61909868	62122822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_61910051_61978996_61979315_62047315_62047398_62114022_62114147_62114282_62114411_62116567_62116707_62121006
ENSMUSG00000097039.9_5	chr15	+	1290	7	NIC	ENSMUSG00000097039.9	novel	1563	9	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	6.0736223860962	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTGAAGTCATGATTGT	NA	False	NA	25	True	AATAAA	-33	NA	61909899	62121375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_61910051_61978996_61979315_62021087_62021202_62047315_62047398_62114022_62114151_62114282_62114411_62121006
ENSMUSG00000097039.9_6	chr15	+	2665	6	NIC	ENSMUSG00000097039.9	novel	1342	7	NA	NA	21	-2	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	8.29457654133109	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTTTTAAGCGTGATTT	NA	False	NA	NA	False	AATAAA	-10	NA	61909855	62122820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_61910051_61978996_61979315_62047315_62047398_62114022_62114151_62114282_62114411_62121006
ENSMUSG00000097042.3_0	chr8	+	3978	2	FSM	ENSMUSG00000097042.3	ENSMUST00000180411.3	2311	2	-1670	3	-1670	-3	multi-exon	FALSE	canonical	3	14	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAAGTGTCAGTTGTTTC	NA	False	NA	NA	False	ATTAAA	-28	NA	22968636	22973345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_22972071_22972801
ENSMUSG00000097042.3_2	chr8	+	2451	1	NIC	ENSMUSG00000097042.3	novel	2311	2	NA	NA	586	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAACAAGTGTCAGTTGTT	NA	False	NA	NA	False	ATTAAA	-26	NA	22970892	22973343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_22970900_22973300
ENSMUSG00000097048.8_4	chr6	+	1718	4	FSM	ENSMUSG00000097048.8	ENSMUST00000180896.8	2099	4	374	7	-165	-6	multi-exon	FALSE	canonical	3	81	junction_1	16.5126214353344	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGCTGTGTATTTTT	NA	False	NA	2	True	NA	NA	NA	86503626	86541424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_86504957_86509174_86509290_86540413_86540520_86541257
ENSMUSG00000097048.8_6	chr6	+	1757	4	NNC	ENSMUSG00000097048.8	novel	2099	4	NA	NA	-166	-6	intron_retention	FALSE	canonical	3	38	junction_1	36.6454484061648	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGCTGTGTATTTTT	NA	False	NA	2	True	NA	NA	NA	86503625	86541424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_86504957_86509136_86509290_86540413_86540520_86541257
ENSMUSG00000097048.8_7	chr6	+	1937	3	NIC	ENSMUSG00000097048.8	novel	2099	4	NA	NA	40	-6	intron_retention	FALSE	canonical	3	26	junction_1	46.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGCTGTGTATTTTT	NA	False	NA	2	True	NA	NA	NA	86503292	86541424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_86504957_86540413_86540520_86541257
ENSMUSG00000097061.3_0	chr12	+	2657	1	NIC	ENSMUSG00000097061.3	novel	2545	2	NA	NA	0	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCATTGTATATGTGCATG	2113	False	NA	NA	False	AATAAA	-21	NA	69243984	69246641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_69244000_69246600
ENSMUSG00000097076.2_2	chr10	-	2381	3	NNC	ENSMUSG00000097076.2	novel	1334	4	NA	NA	-1012	1070	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_1	10	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCATAGGCGTTTTTGA	8447	False	NA	-6	True	AATAAA	-15	NA	84390214	84382210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_84384062_84385083_84385495_84390095
ENSMUSG00000097076.2_3	chr10	-	2333	2	NNC	ENSMUSG00000097076.2	novel	1334	4	NA	NA	-1012	0	intron_retention	FALSE	canonical	3	31	junction_1	0	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATTTAAGTCAAGCATCT	8447	False	NA	NA	False	AATAAA	-17	NA	84390214	84383280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_84385495_84390095
ENSMUSG00000097119.3_12	chr17	+	4190	1	NIC	ENSMUSG00000097119.3	novel	4897	3	NA	NA	4483	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCACATTTGTGATTGTT	2149	False	NA	7	True	NA	NA	NA	45749273	45753463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_45749300_45753500
ENSMUSG00000097119.3_5	chr17	+	6824	2	FSM	ENSMUSG00000097119.3	ENSMUST00000233673.2	2578	2	-6	-4240	-6	-7	multi-exon	FALSE	canonical	3	41	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCACATTTGTGATTGTT	NA	False	NA	7	True	NA	NA	NA	45744784	45753463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_45745154_45747008
ENSMUSG00000097121.3_0	chr12	+	3031	1	FSM	ENSMUSG00000097121.3	ENSMUST00000222895.2	2557	1	-2038	1564	-2038	-1564	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCGCCATCTTGGCTCG	NA	False	NA	NA	False	NA	NA	NA	101046671	101049702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_101046700_101049700
ENSMUSG00000097121.3_3	chr12	+	641	3	FSM	ENSMUSG00000097121.3	ENSMUST00000221614.2	706	3	59	6	-5	-2	multi-exon	FALSE	canonical	2	9	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGTTTGTTTGGTTTAG	NA	False	NA	NA	False	AATAAA	-11	NA	101049995	101054436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_101050285_101050542_101050759_101054300
ENSMUSG00000097125.3_1	chr17	-	179	1	ISM	ENSMUSG00000097125.3	ENSMUST00000234190.2	417	2	17641	12	17046	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACACAGAGA	NA	False	NA	NA	False	NA	NA	NA	29666083	29665904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_29665900_29666100
ENSMUSG00000097134.3_11	chr10	-	479	2	FSM	ENSMUSG00000097134.3	ENSMUST00000219021.2	388	2	-85	-6	-85	6	multi-exon	FALSE	canonical	3	19	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCTCTAACTTTAAAAAAA	NA	False	NA	NA	False	AATAAA	-23	NA	66753603	66751408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_66751739_66753454
ENSMUSG00000097134.3_4	chr10	-	1669	3	NIC	ENSMUSG00000097134.3	novel	2229	4	NA	NA	-26	298	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGTATTCTATTTCTT	NA	False	NA	-3	True	AATAAA	-16	NA	66753544	66747969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_66749445_66751634_66751739_66753454
ENSMUSG00000097134.3_6	chr10	-	1562	1	Genic_Genomic	ENSMUSG00000097134.3	novel	NA	NA	NA	NA	3986	297	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGTATTCTATTTCT	NA	False	NA	-4	True	AATAAA	-15	NA	66749532	66747970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_66748000_66749500
ENSMUSG00000097145.6_2	chr5	+	175	1	ISM	ENSMUSG00000097145.6	ENSMUST00000180601.6	2120	4	7112	19	7078	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTGAAAAACTGGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	52355132	52355307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_52355100_52355300
ENSMUSG00000097145.6_3	chr5	+	2435	4	FSM	ENSMUSG00000097145.6	ENSMUST00000180601.6	2120	4	-6	-309	1	309	multi-exon	FALSE	canonical	0	0	junction_2	7.93025150224688	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATTGCTTTTTCTTTGC	NA	False	NA	NA	False	NA	NA	NA	52348014	52355635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_52348280_52350259_52350939_52352142_52352233_52354234
ENSMUSG00000097148.3_0	chr14	+	143	1	ISM	ENSMUSG00000097148.3	ENSMUST00000181173.2	1712	4	75832	17	75832	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	11188878	11189021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_11188900_11189000
ENSMUSG00000097162.3_0	chr7	-	468	2	FSM	ENSMUSG00000097162.3	ENSMUST00000209166.2	271	2	-191	-6	-147	-3	multi-exon	FALSE	canonical	3	49	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCGCTATCTAAAATGTC	NA	False	NA	-7	True	AATAAA	-23	NA	89779339	89774032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_89774241_89779079
ENSMUSG00000097164.3_1	chr10	-	3876	3	FSM	ENSMUSG00000097164.3	ENSMUST00000181906.3	6566	3	1	2689	1	-2689	multi-exon	FALSE	canonical	3	9	junction_2	6	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGACCACATATCTCCA	NA	False	NA	-13	True	AATAAA	-15	NA	94524437	94509575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_94512992_94514192_94514310_94524094
ENSMUSG00000097164.3_6	chr10	-	3472	2	ISM	ENSMUSG00000097164.3	ENSMUST00000181906.3	6566	3	10190	2689	10190	-2689	3prime_fragment	FALSE	canonical	3	21	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGACCACATATCTCCA	NA	False	NA	-13	True	AATAAA	-15	NA	94514248	94509575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_94512992_94514192
ENSMUSG00000097167.2_0	chr3	+	940	2	ISM	ENSMUSG00000097167.2	ENSMUST00000181819.2	956	4	16	6866	16	-6866	5prime_fragment	FALSE	canonical	3	12	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAACAAACAAAATAATT	262	False	NA	NA	False	ATTAAA	-5	NA	95124783	95127103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_95125370_95126749
ENSMUSG00000097177.9_2	chr9	-	2530	5	FSM	ENSMUSG00000097177.9	ENSMUST00000181448.3	602	5	24	-1952	7	865	multi-exon	FALSE	canonical	3	17	junction_4	50.4746223363781	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTTGCTTAATTCACT	NA	False	NA	NA	False	NA	NA	NA	88740899	88737332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88739637_88739866_88739925_88740278_88740354_88740442_88740498_88740861
ENSMUSG00000097180.6_0	chr5	+	1386	4	FSM	ENSMUSG00000097180.6	ENSMUST00000181574.6	1375	4	-16	5	-16	-5	multi-exon	FALSE	canonical	0	0	junction_3	11.0453610171873	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAATCTGTCGTCAGGTTG	NA	False	NA	NA	False	NA	NA	NA	24055578	24060031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24055620_24057118_24057154_24057715_24057759_24058764
ENSMUSG00000097180.6_1	chr5	+	1346	3	ISM	ENSMUSG00000097180.6	ENSMUST00000181574.6	1375	4	1523	5	1519	-5	3prime_fragment	FALSE	canonical	0	0	junction_2	13.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAATCTGTCGTCAGGTTG	NA	False	NA	NA	False	NA	NA	NA	24057117	24060031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_24057154_24057715_24057759_24058764
ENSMUSG00000097180.6_2	chr5	+	3428	2	NIC	ENSMUSG00000097180.6	novel	1375	4	NA	NA	-1	-5	intron_retention	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAATCTGTCGTCAGGTTG	NA	False	NA	NA	False	NA	NA	NA	24055597	24060031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_24057759_24058764
ENSMUSG00000097180.6_4	chr5	+	3760	2	NIC	ENSMUSG00000097180.6	novel	318	3	NA	NA	-1	-117	intron_retention	FALSE	canonical	3	27	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	24055597	24059919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_24057154_24057715
ENSMUSG00000097184.3_0	chr16	+	1601	2	ISM	ENSMUSG00000097184.3	ENSMUST00000181485.3	2428	3	-396	3733	-396	-3733	5prime_fragment	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGTGTATCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	29827088	29836515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_29827549_29835374
ENSMUSG00000097187.2_0	chr2	-	808	2	FSM	ENSMUSG00000097187.2	ENSMUST00000181711.2	726	2	-87	5	-87	-5	multi-exon	FALSE	canonical	3	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGACACTCTCCTGCTT	NA	False	NA	NA	False	AATAAA	-16	NA	84574086	84572517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_84573045_84573805
ENSMUSG00000097195.11_0	chr9	-	999	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239369.2	1678	5	674	5	0	0	multi-exon	FALSE	canonical	3	405	junction_2	300.420122495148	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404941	88403107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536
ENSMUSG00000097195.11_1	chr9	-	668	5	NIC	ENSMUSG00000097195.11	novel	939	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_1	309.579553588411	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404941	88403107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404640_88404903
ENSMUSG00000097195.11_2	chr9	-	777	6	FSM	ENSMUSG00000097195.11	ENSMUST00000239365.2	809	6	29	3	0	0	multi-exon	FALSE	canonical	3	34	junction_5	430.698688180032	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404941	88403107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
ENSMUSG00000097195.11_3	chr9	-	1265	3	NIC	ENSMUSG00000097195.11	novel	1533	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	461	junction_1	364.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404943	88403107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_88403502_88403970_88404435_88404536
ENSMUSG00000097195.11_4	chr9	-	544	1	FSM	ENSMUSG00000119666.1	ENSMUST00000240226.1	72	1	2	-474	2	474	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88403651	88403107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88403100_88403700
ENSMUSG00000097195.11_5	chr9	-	932	4	NIC	ENSMUSG00000097195.11	novel	1678	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	461	junction_1	319.66545011934	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404941	88403107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536
ENSMUSG00000097195.11_7	chr9	-	735	6	FSM	ENSMUSG00000097195.11	ENSMUST00000182232.9	826	6	86	5	0	0	multi-exon	FALSE	canonical	3	405	junction_2	292.278634183205	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404941	88403107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404640_88404903
ENSMUSG00000097195.11_9	chr9	-	1330	4	FSM	ENSMUSG00000097195.11	ENSMUST00000190033.4	1408	4	75	3	0	0	multi-exon	FALSE	canonical	3	405	junction_2	320.936476926856	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404941	88403107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88403502_88403702_88403770_88403970_88404435_88404536
ENSMUSG00000097204.3_0	chr3	-	1544	1	Genic_Genomic	ENSMUSG00000097204.3	novel	NA	NA	NA	NA	-4	498	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTACCCGGCTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	96079736	96078192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_-_96078200_96079700
ENSMUSG00000097217.3_0	chr17	+	188	1	Intergenic	novelGene_3453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACAGGCTGGTGAGATG	NA	False	NA	NA	False	NA	NA	NA	32505086	32505274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_32505100_32505300
ENSMUSG00000097239.8_3	chr11	-	1203	11	ISM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	405	23	172	-23	3prime_fragment	FALSE	canonical	3	507	junction_6	56.5162808401261	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTAAAATATTGTGACTC	NA	False	NA	-44	True	NA	NA	NA	101308036	101297687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928
ENSMUSG00000097248.10_0	chr8	+	510	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182174.8	498	4	-11	-1	-11	0	multi-exon	FALSE	canonical	3	132	junction_1	31.0590834807897	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	187	False	NA	7	True	AATAAA	-15	NA	88199428	88252182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88252042
ENSMUSG00000097248.10_1	chr8	+	585	5	NIC	ENSMUSG00000097248.10	novel	498	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	79.1023861839831	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGAGTGTGTCCATTCCTC	198	False	NA	5	True	AATAAA	-13	NA	88199439	88252180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_88199589_88240436_88240525_88248363_88248442_88250923_88251056_88252042
ENSMUSG00000097248.10_13	chr8	+	1125	2	NIC	ENSMUSG00000097248.10	novel	1303	2	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATTTTGTGCAGGATGT	210	False	NA	NA	False	AATAAA	-16	NA	88199744	88230600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_88199859_88229589
ENSMUSG00000097248.10_8	chr8	+	444	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182758.2	447	4	1	2	1	0	multi-exon	FALSE	canonical	3	44	junction_1	69.6866000191014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGAGTGTGTCCATTCCTC	228	False	NA	5	True	AATAAA	-13	NA	88199762	88252180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_88199859_88248363_88248442_88250923_88251056_88252042
ENSMUSG00000097266.2_0	chr7	-	143	1	Genic_Genomic	ENSMUSG00000097266.2	novel	NA	NA	NA	NA	2386	18	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGCCCCAGT	4907	False	NA	NA	False	NA	NA	NA	19032309	19032166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_19032200_19032300
ENSMUSG00000097277.8_0	chr7	+	6251	2	NIC	ENSMUSG00000097277.8	novel	725	4	NA	NA	-4	-15	intron_retention	FALSE	canonical	3	93	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAAAAACTATCA	NA	False	NA	-11	True	AGTAAA	-26	NA	81173293	81181227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_81179276_81180958
ENSMUSG00000097277.8_1	chr7	+	723	4	NNC	ENSMUSG00000097277.8	novel	725	4	NA	NA	-1	-15	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	40.7458245986288	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAAAAACTATCA	NA	False	NA	-11	True	AGTAAA	-26	NA	81173309	81181227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_81173429_81178534_81178689_81179094_81179276_81180958
ENSMUSG00000097277.8_3	chr7	+	688	4	FSM	ENSMUSG00000097277.8	ENSMUST00000180879.8	725	4	22	15	22	-15	multi-exon	FALSE	canonical	3	35	junction_1	29.9777695412228	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAAAAACTATCA	NA	False	NA	-11	True	AGTAAA	-26	NA	81173340	81181227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_81173425_81178534_81178689_81179094_81179276_81180958
ENSMUSG00000097277.8_4	chr7	+	763	4	NIC	ENSMUSG00000097277.8	novel	725	4	NA	NA	2	-15	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	41.2148840428633	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAAAAACTATCA	NA	False	NA	-11	True	AGTAAA	-26	NA	81173312	81181227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_81173472_81178534_81178689_81179094_81179276_81180958
ENSMUSG00000097277.8_5	chr7	+	819	5	NIC	ENSMUSG00000097277.8	novel	725	4	NA	NA	1	-15	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	35.5457451743524	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAAAAACTATCA	NA	False	NA	-11	True	AGTAAA	-26	NA	81173311	81181227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_81173425_81178534_81178689_81178904_81179007_81179094_81179276_81180958
ENSMUSG00000097277.8_7	chr7	+	5673	3	ISM	ENSMUSG00000097277.8	ENSMUST00000180879.8	725	4	147	15	100	-15	3prime_fragment	FALSE	canonical	3	93	junction_2	5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAAAAACTATCA	NA	False	NA	-11	True	AGTAAA	-26	NA	81173465	81181227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_81178689_81179094_81179276_81180958
ENSMUSG00000097287.4_2	chr5	+	2854	1	FSM	ENSMUSG00000097287.4	ENSMUST00000196629.2	2265	1	-2035	1446	172	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCGCTTCAGCCTGTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	143750030	143752884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143750000_143752900
ENSMUSG00000097290.10_0	chr16	+	581	3	FSM	ENSMUSG00000097290.10	ENSMUST00000209449.2	580	3	8	-9	3	-5	multi-exon	FALSE	canonical	3	94	junction_2	32	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGATGGGTTGAAAGGT	NA	False	NA	25	True	AATAAA	-30	NA	21613099	21627785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_21613197_21614599_21614726_21627427
ENSMUSG00000097290.10_1	chr16	+	711	4	FSM	ENSMUSG00000097290.10	ENSMUST00000211443.2	767	4	44	12	0	2	multi-exon	FALSE	canonical	3	20	junction_2	60.8896999134957	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTGGAAAGATGGGTT	NA	False	NA	18	True	AATAAA	-23	NA	21613111	21627778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_21613197_21614599_21614726_21625720_21625870_21627427
ENSMUSG00000097290.10_11	chr16	+	2429	1	NIC	ENSMUSG00000097290.10	novel	1139	4	NA	NA	9303	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGCTTTTAGTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	21622444	21624873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_21622400_21624900
ENSMUSG00000097290.10_13	chr16	+	212	1	ISM	ENSMUSG00000097290.10	ENSMUST00000211443.2	767	4	14496	15	14422	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATTCTGGAAAGATGG	NA	False	NA	15	True	AATAAA	-20	NA	21627563	21627775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_21627600_21627800
ENSMUSG00000097290.10_14	chr16	+	3598	5	ISM	ENSMUSG00000097290.10	ENSMUST00000209728.2	701	6	-14	2697	0	-2	5prime_fragment	FALSE	canonical	3	8	junction_4	57.7164404654341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGCTTTTAGTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	21613091	21624873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21621704
ENSMUSG00000097290.10_18	chr16	+	2227	3	ISM	ENSMUSG00000097290.10	ENSMUST00000211443.2	767	4	56	42	4	-28	intron_retention	FALSE	canonical	3	20	junction_2	69	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAATAAAAAAAATTAAACA	NA	False	NA	-12	True	NA	NA	NA	21613123	21627748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_21613197_21614599_21614726_21625720
ENSMUSG00000097290.10_4	chr16	+	930	6	NIC	ENSMUSG00000097290.10	novel	701	6	NA	NA	0	-6	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	51.1921869038626	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAGATGGGTTGAAAGG	NA	False	NA	24	True	AATAAA	-29	NA	21613096	21627784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21625720_21625870_21627427
ENSMUSG00000097290.10_5	chr16	+	3589	5	FSM	ENSMUSG00000097290.10	ENSMUST00000180830.3	3557	5	-40	8	-4	-3	multi-exon	FALSE	canonical	3	16	junction_4	55.9838146253004	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTGCTTTTAGTTGTGG	NA	False	NA	NA	False	NA	NA	NA	21613101	21624872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21621702
ENSMUSG00000097290.10_9	chr16	+	3516	5	FSM	ENSMUSG00000097290.10	ENSMUST00000181780.9	1650	5	17	-1883	2	-4	multi-exon	FALSE	canonical	3	11	junction_2	59.8289227715158	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTGCTTTTAGTTGTG	NA	False	NA	NA	False	NA	NA	NA	21613113	21624871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_21613197_21614599_21614726_21619524_21619587_21620030_21620107_21621702
ENSMUSG00000097303.3_0	chr14	+	1274	3	FSM	ENSMUSG00000097303.3	ENSMUST00000224786.2	907	3	-362	-5	-301	5	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGACTGTTTACTGTTGCA	NA	False	NA	NA	False	AATAAA	-19	NA	58236478	58241159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_58236920_58239766_58239877_58240436
ENSMUSG00000097310.3_0	chr14	+	950	1	ISM	ENSMUSG00000097310.3	ENSMUST00000181044.2	3415	3	8965	412	8965	-412	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATACCGAAAACCACATG	NA	False	NA	NA	False	AATAAA	-12	NA	34491148	34492098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_34491100_34492100
ENSMUSG00000097313.3_0	chr16	-	1810	4	FSM	ENSMUSG00000097313.3	ENSMUST00000181968.2	1789	4	-18	-3	-18	3	multi-exon	FALSE	canonical	0	0	junction_3	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACAGCTTTCCTTCTCCA	NA	False	NA	NA	False	AATAAA	-26	NA	29765353	29726333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_29726669_29727207_29728521_29729333_29729414_29765271
ENSMUSG00000097313.3_4	chr16	-	318	2	ISM	ENSMUSG00000097313.3	ENSMUST00000232297.2	699	4	-7	31296	-6	5560	5prime_fragment	FALSE	canonical	3	93	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATCTAATGATAGCGGTG	NA	False	NA	NA	False	ATTAAA	-39	NA	29765341	29757637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_29757886_29765271
ENSMUSG00000097313.3_5	chr16	-	2142	1	FSM	ENSMUSG00000097313.3	ENSMUST00000232356.2	2375	1	229	4	-8	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29765343	29763201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_29763200_29765300
ENSMUSG00000097318.3_1	chr16	-	712	2	FSM	ENSMUSG00000097318.3	ENSMUST00000180923.2	737	2	25	0	25	0	multi-exon	FALSE	canonical	3	44	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTGGAATTCTCTCCTT	NA	False	NA	-3	True	ATTAAA	-15	NA	33201072	33200224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_33200750_33200885
ENSMUSG00000097318.3_2	chr16	-	691	2	FSM	ENSMUSG00000097318.3	ENSMUST00000231849.2	665	2	-27	1	25	0	multi-exon	FALSE	canonical	3	19	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTGGAATTCTCTCCTT	NA	False	NA	-3	True	ATTAAA	-15	NA	33201072	33200224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_33200729_33200885
ENSMUSG00000097320.9_0	chr7	+	826	4	ISM	ENSMUSG00000097320.9	ENSMUST00000180820.8	1276	6	12	9965	12	-1535	5prime_fragment	FALSE	canonical	2	5	junction_1	4.18993502999218	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTACTGGTTTATGC	538	False	NA	NA	False	GGGGCT	-40	NA	30429015	30435389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_30429280_30431838_30432187_30434128_30434194_30435240
ENSMUSG00000097326.3_0	chr13	-	656	3	FSM	ENSMUSG00000097326.3	ENSMUST00000180777.3	672	3	14	2	14	-2	multi-exon	FALSE	canonical	3	15	junction_1	5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCTTTGTATGTGTGA	NA	False	NA	-1	True	ATTAAA	-13	NA	48427346	48425890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_48426292_48426385_48426533_48427238
ENSMUSG00000097327.8_1	chr10	-	556	2	FSM	ENSMUSG00000097327.8	ENSMUST00000181614.2	548	2	-6	-2	-6	2	multi-exon	FALSE	canonical	3	41	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGACTGCCTTGGTTTTAT	NA	False	NA	-6	True	NA	NA	NA	22024728	22020198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_22020414_22024387
ENSMUSG00000097327.8_3	chr10	-	4244	2	NNC	ENSMUSG00000097327.8	novel	548	2	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAATGACTGCCTTGGT	NA	False	NA	-11	True	NA	NA	NA	22024717	22020203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_22024118_22024387
ENSMUSG00000097328.8_1	chr11	-	1307	7	FSM	ENSMUSG00000097328.8	ENSMUST00000181810.8	1435	7	28	100	28	-100	multi-exon	FALSE	canonical	3	19	junction_6	8.13941029804985	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGGGGTTCAGAGTAAC	5440	False	NA	NA	False	AATAAA	-14	NA	69586647	69577175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586268_69586421
ENSMUSG00000097333.8_0	chr13	-	2624	4	FSM	ENSMUSG00000097333.8	ENSMUST00000181767.8	2656	4	27	5	-4	-5	multi-exon	FALSE	canonical	3	34	junction_2	7.71722460186015	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGCCTGGTCATAGT	9249	False	NA	NA	False	NA	NA	NA	67674269	67663904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67666232_67668744_67668841_67669311_67669439_67674195
ENSMUSG00000097333.8_3	chr13	-	2512	3	ISM	ENSMUSG00000097333.8	ENSMUST00000181767.8	2656	4	4898	3	4842	-3	3prime_fragment	FALSE	canonical	3	34	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGCCTGGTCATAGTGT	NA	False	NA	NA	False	NA	NA	NA	67669398	67663902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67666232_67668744_67668841_67669311
ENSMUSG00000097333.8_8	chr13	-	353	2	FSM	ENSMUSG00000097333.8	ENSMUST00000181573.2	382	2	28	1	-3	-1	multi-exon	FALSE	canonical	3	52	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGGCTATTTGGTTTGT	9250	False	NA	NA	False	AATAAA	-19	NA	67674268	67669158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67669439_67674195
ENSMUSG00000097343.3_0	chr7	-	1756	2	FSM	ENSMUSG00000097343.3	ENSMUST00000180977.3	1812	2	55	1	5	-1	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGAACCACGTTGGTC	NA	False	NA	NA	False	AATAAA	-12	NA	120276738	120272958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_120274500_120276523
ENSMUSG00000097360.9_1	chr13	+	2212	3	ISM	ENSMUSG00000097360.9	ENSMUST00000180908.9	1084	4	10	2	10	-2	intron_retention	FALSE	canonical	2	5	junction_2	3	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATAAGGTAGTTCAGT	NA	False	NA	NA	False	ATTAAA	-12	NA	67701362	67709349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_67701473_67701692_67701749_67707303
ENSMUSG00000097375.4_0	chr13	-	2308	1	FSM	ENSMUSG00000065453.3	ENSMUST00000083519.3	103	1	-1719	-486	-1719	486	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTTGTGCTTTTCTGTTT	NA	False	NA	0	True	AATAAA	-15	NA	48691309	48689001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_48689000_48691300
ENSMUSG00000097391.9_3	chr12	+	2108	6	NIC	ENSMUSG00000097391.9	novel	3187	15	NA	NA	-942	-7	combination_of_known_splicesites	TRUE	canonical	0	0	junction_1	19.6203975494892	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATGTAAATATGCTTGCG	3103	False	NA	11	True	AATAAA	-11	NA	109703193	109715882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109704242_109708123_109708250_109708495_109708725_109710099_109710282_109714558_109714728_109715528
ENSMUSG00000097391.9_4	chr12	+	2520	5	NIC	ENSMUSG00000097391.9	novel	1300	8	NA	NA	2456	-1	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	18.6010752377383	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATATGCTTGCGTGTCTG	877	False	NA	17	True	AATAAA	-17	NA	109706669	109715888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109708250_109708495_109708725_109710099_109710282_109714558_109714728_109715528
ENSMUSG00000097391.9_6	chr12	+	2511	2	FSM	ENSMUSG00000093351.3_ENSMUSG00000097391.9	ENSMUST00000182300.2	694	2	-1820	3	-1734	0	multi-exon	FALSE	canonical	3	58	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATATGCTTGCGTGTCTGT	2969	False	NA	18	True	AATAAA	-18	NA	109712577	109715889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_109714728_109715528
ENSMUSG00000097391.9_9	chr12	+	1966	4	NIC	ENSMUSG00000097391.9	novel	1300	8	NA	NA	2827	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	23.7954243967663	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATATGCTTGCGTGTCT	236	False	NA	16	True	AATAAA	-16	NA	109707040	109715887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109708250_109708495_109708725_109714558_109714728_109715528
ENSMUSG00000097392.5_10	chr5	+	5236	4	FSM	ENSMUSG00000097392.5	ENSMUST00000181620.3	3805	4	-1437	6	621	-6	multi-exon	FALSE	canonical	3	11	junction_2	3.68178700572909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAACACAGCTTGGTTCT	9821	False	NA	-2	True	AATAAA	-14	NA	104672163	104702067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_104673839_104686691_104686840_104689031_104689129_104698751
ENSMUSG00000097392.5_12	chr5	+	5072	3	ISM	ENSMUSG00000097392.5	ENSMUST00000181620.3	3805	4	11584	2	-3252	-2	3prime_fragment	FALSE	canonical	3	11	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACAGCTTGGTTCTTTTT	NA	False	NA	2	True	AATAAA	-18	NA	104685184	104702071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_104686840_104689031_104689129_104698751
ENSMUSG00000097392.5_14	chr5	+	2821	1	ISM	ENSMUSG00000097392.5	ENSMUST00000239420.2	9445	8	43035	2	10202	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACAGCTTGGTTCTTTTT	NA	False	NA	2	True	AATAAA	-18	NA	104699250	104702071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_104699200_104702100
ENSMUSG00000097392.5_2	chr5	+	1383	2	FSM	ENSMUSG00000097392.5	ENSMUST00000096452.7	5181	2	7	3791	7	-3791	multi-exon	FALSE	canonical	3	13	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACGAGAAAAAGAAAAGAAA	NA	False	NA	NA	False	AAAAAG	-6	NA	104656224	104666458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_104656438_104665288
ENSMUSG00000097392.5_3	chr5	+	9392	8	FSM	ENSMUSG00000097392.5	ENSMUST00000239420.2	9445	8	51	2	49	-2	multi-exon	FALSE	canonical	1	3	junction_4	5.06287004190553	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACAGCTTGGTTCTTTTT	NA	False	NA	2	True	AATAAA	-18	NA	104656266	104702071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_104656438_104665288_104670591_104671982_104672015_104672124_104672292_104673683_104673839_104686691_104686840_104689031_104689129_104698751
ENSMUSG00000097392.5_4	chr5	+	5786	7	ISM	ENSMUSG00000097392.5	ENSMUST00000239420.2	9445	8	12504	6	-2823	-6	3prime_fragment	FALSE	canonical	1	3	junction_3	5.43905629069357	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAACACAGCTTGGTTCT	6377	False	NA	-2	True	AATAAA	-14	NA	104668719	104702067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_104670591_104671982_104672015_104672124_104672292_104673683_104673839_104686691_104686840_104689031_104689129_104698751
ENSMUSG00000097393.9_0	chr8	+	1779	4	NIC	ENSMUSG00000097393.9	novel	3677	10	NA	NA	-10	-1454	intron_retention	FALSE	canonical	0	0	junction_1	3.55902608401044	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACAAAACTCCTAGCCA	NA	False	NA	NA	False	NA	NA	NA	109801843	109978817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_109802377_109963661_109963759_109976488_109976556_109977735
ENSMUSG00000097398.3_0	chr1	+	341	2	NIC	ENSMUSG00000097398.3	novel	358	3	NA	NA	23	-1	combination_of_known_splicesites	FALSE	canonical	3	49	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGGTCTTGGCTCCT	NA	False	NA	16	True	NA	NA	NA	88682634	88683457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_88682774_88683255
ENSMUSG00000097398.3_1	chr1	+	589	2	NIC	ENSMUSG00000097398.3	novel	479	3	NA	NA	2	-13	intron_retention	FALSE	canonical	3	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTTGATCAGAGAACTTG	NA	False	NA	4	True	NA	NA	NA	88682613	88683445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_88683013_88683255
ENSMUSG00000097398.3_2	chr1	+	464	3	FSM	ENSMUSG00000097398.3	ENSMUST00000181016.3	479	3	12	3	12	-3	multi-exon	FALSE	canonical	3	8	junction_1	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGAACTTGGTCTTGGCTC	NA	False	NA	14	True	NA	NA	NA	88682623	88683455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_88682681_88682805_88683013_88683255
ENSMUSG00000097398.3_3	chr1	+	834	1	NIC	ENSMUSG00000097398.3	novel	479	3	NA	NA	12	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGGTCTTGGCTCCT	NA	False	NA	16	True	NA	NA	NA	88682623	88683457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_88682600_88683500
ENSMUSG00000097403.3_1	chr1	-	2662	1	FSM	ENSMUSG00000097403.3	ENSMUST00000194227.2	2652	1	-10	0	-10	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTGTTTATAGGTATT	2867	False	NA	NA	False	NA	NA	NA	136343242	136340580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_136340600_136343200
ENSMUSG00000097412.3_0	chr10	+	1614	3	FSM	ENSMUSG00000097412.3	ENSMUST00000218095.2	1622	3	8	0	8	0	multi-exon	FALSE	canonical	3	71	junction_1	95.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521396	86525818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_86521473_86521743_86521861_86524397
ENSMUSG00000097412.3_1	chr10	+	1689	3	FSM	ENSMUSG00000097412.3	ENSMUST00000220419.2	1665	3	-24	0	-14	0	multi-exon	FALSE	canonical	3	53	junction_1	104.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521450	86525818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_86521602_86521743_86521861_86524397
ENSMUSG00000097415.3_0	chr7	-	3254	1	FSM	ENSMUSG00000097415.3	ENSMUST00000206358.2	3009	1	-249	4	-249	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTGTGGTAGTGGTCTT	NA	False	NA	-4	True	NA	NA	NA	75422043	75418789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_75418800_75422000
ENSMUSG00000097415.3_1	chr7	-	1371	3	FSM	ENSMUSG00000097415.3	ENSMUST00000181224.2	656	3	5	-720	5	-4	multi-exon	FALSE	canonical	3	19	junction_1	6.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTGTGGTAGTGGTCTT	NA	False	NA	-4	True	NA	NA	NA	75431842	75418789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_75419986_75430372_75430505_75431799
ENSMUSG00000097416.4_0	chr1	-	3300	1	FSM	ENSMUSG00000097416.4	ENSMUST00000180429.3	3287	1	-11	-2	5	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTGTCTTAGCACCATT	NA	False	NA	NA	False	NA	NA	NA	191722094	191718794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191718800_191722100
ENSMUSG00000097424.3_0	chr8	+	172	1	NIC	ENSMUSG00000097424.3	novel	618	3	NA	NA	3774	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAATGTGTCACAACC	NA	False	NA	NA	False	NA	NA	NA	122274900	122275072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_122274900_122275100
ENSMUSG00000097427.6_0	chr10	+	1174	2	FSM	ENSMUSG00000097427.6	ENSMUST00000180692.3	509	2	-24	-641	-24	-35	multi-exon	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATAAACAAGTATTCTG	NA	False	NA	NA	False	AATAAA	-10	NA	103987748	103989791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_103987818_103988686
ENSMUSG00000097429.2_0	chr12	-	1758	3	NNC	ENSMUSG00000097429.2	novel	1423	2	NA	NA	-113	14855	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTTCATAAATTCATCAT	NA	False	NA	NA	False	NA	NA	NA	3407266	3378960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_3380193_3394825_3394948_3406862
ENSMUSG00000097431.3_3	chr14	+	177	1	ISM	ENSMUSG00000097431.3	ENSMUST00000181482.2	2513	2	6973	1478	6965	201	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAGTAACATGAAAT	345	False	NA	NA	False	NA	NA	NA	51114805	51114982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_51114800_51115000
ENSMUSG00000097440.3_0	chr18	-	2875	1	FSM	ENSMUSG00000097440.3	ENSMUST00000224036.2	2779	1	35	-131	35	131	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAACACGAGGGGGAAAT	NA	False	NA	NA	False	AATAAA	-11	NA	11973891	11971016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_11971000_11973900
ENSMUSG00000097451.12_27	chr12	+	2365	11	FSM	ENSMUSG00000097451.12	ENSMUST00000181253.10	2368	11	2	1	2	-1	multi-exon	FALSE	canonical	3	396	junction_3	76.4947056991528	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAGTGTGAAGTACA	2867	False	NA	NA	False	NA	NA	NA	109612565	109628142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
ENSMUSG00000097451.12_30	chr12	+	3212	10	NIC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	2	0	intron_retention	FALSE	canonical	3	66	junction_7	180.249484169054	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGTGTGAAGTACAA	2867	False	NA	NA	False	NA	NA	NA	109612565	109628143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109613186_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623266_109624486_109624556_109626156_109626242_109627179
ENSMUSG00000097451.12_31	chr12	+	2313	10	NIC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	206.409756683934	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGTGTGAAGTACAA	2867	False	NA	NA	False	NA	NA	NA	109612565	109628143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109624486_109624556_109626156_109626242_109627179
ENSMUSG00000097451.12_32	chr12	+	3220	10	NIC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	2	-1	intron_retention	FALSE	canonical	3	549	junction_7	35.1002092779804	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAGTGTGAAGTACA	2867	False	NA	NA	False	NA	NA	NA	109612565	109628142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_109613186_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
ENSMUSG00000097451.12_41	chr12	+	2356	11	ISM	ENSMUSG00000097451.12	ENSMUST00000238333.2	2746	13	1256	8	2	-1	3prime_fragment	FALSE	canonical	3	66	junction_8	178.955888419465	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAGTGTGAAGTACA	2867	False	NA	NA	False	NA	NA	NA	109612565	109628142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623266_109624486_109624556_109626156_109626242_109627179
ENSMUSG00000097451.12_80	chr12	+	1914	8	FSM	ENSMUSG00000097451.12	ENSMUST00000238384.2	2352	8	431	7	2	0	multi-exon	FALSE	canonical	3	549	junction_5	36.3862499259469	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGTGTGAAGTACAA	1332	False	NA	NA	False	NA	NA	NA	109617103	109628143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
ENSMUSG00000097463.3_0	chr9	-	2292	1	FSM	ENSMUSG00000097463.3	ENSMUST00000217385.2	1782	1	-512	2	-1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGATGTTCTCAGTTCCA	2737	False	NA	NA	False	GATAAA	-15	NA	46240712	46238420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_46238400_46240700
ENSMUSG00000097467.3_1	chr9	+	215	1	Genic_Genomic	ENSMUSG00000097467.3	novel	NA	NA	NA	NA	3628	4	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTTTTTCTTTTTAAAAA	800	False	NA	NA	False	NA	NA	NA	44033046	44033261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_+_44033000_44033300
ENSMUSG00000097483.3_1	chr13	-	2088	1	Genic_Genomic	ENSMUSG00000097483.3	novel	NA	NA	NA	NA	15709	1433	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGCATGCTTGTGCTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	66651878	66649790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_66649800_66651900
ENSMUSG00000097483.3_3	chr13	-	1411	2	ISM	ENSMUSG00000097483.3	ENSMUST00000180403.3	1519	4	14547	-9	14183	3	intron_retention	FALSE	canonical	3	64	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTGTTTTTCTTGAGG	NA	False	NA	NA	False	NA	NA	NA	66653404	66651220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_66652035_66652807
ENSMUSG00000097483.3_4	chr13	-	1020	3	FSM	ENSMUSG00000097483.3	ENSMUST00000181516.2	1094	3	74	0	74	0	multi-exon	FALSE	canonical	3	13	junction_1	24	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGAACTGTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	66667513	66651223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_66652035_66653161_66653268_66667410
ENSMUSG00000097483.3_5	chr13	-	1115	4	FSM	ENSMUSG00000097483.3	ENSMUST00000180403.3	1519	4	410	-6	46	0	multi-exon	FALSE	canonical	3	52	junction_2	5.09901951359278	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGAACTGTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	66667541	66651223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_66652035_66652807_66652875_66653161_66653268_66667410
ENSMUSG00000097493.4_0	chr15	+	2378	3	FSM	ENSMUSG00000097493.4	ENSMUST00000180730.3	3074	3	696	0	14	0	multi-exon	FALSE	canonical	1	1	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTGGTGAGTTCCTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	60694815	60700499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_60696633_60699180_60699212_60699969
ENSMUSG00000097493.4_2	chr15	+	2429	1	FSM	ENSMUSG00000097493.4	ENSMUST00000192865.2	2657	1	134	94	134	-94	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCTTCTTTGTTTTAGA	NA	False	NA	NA	False	AGTAAA	-16	NA	60694935	60697364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_60694900_60697400
ENSMUSG00000097509.2_0	chr7	+	1439	1	FSM	ENSMUSG00000097509.2	ENSMUST00000181932.2	1569	1	-590	720	-590	-720	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAGACTAACTACTCTG	NA	False	NA	NA	False	AATAAA	-22	NA	35254201	35255640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_35254200_35255600
ENSMUSG00000097519.3_3	chr1	-	2220	4	FSM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	26	-194	26	194	multi-exon	FALSE	canonical	3	14	junction_1	26.1576417557513	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACTAAAAACATAAAAA	NA	False	NA	NA	False	TTTAAA	-36	NA	57416677	57398186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_57399823_57401724_57401923_57414406_57414679_57416563
ENSMUSG00000097519.3_5	chr1	-	911	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	25	3018	25	-3018	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATTATAATTTCAACTTT	NA	False	NA	NA	False	NA	NA	NA	57416678	57401398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_57401923_57414406_57414679_57416563
ENSMUSG00000097530.2_0	chr7	+	2077	1	FSM	ENSMUSG00000097530.2	ENSMUST00000181818.2	1461	1	-26	-590	-26	590	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATGCTATCAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-5	NA	72322539	72324616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_72322500_72324600
ENSMUSG00000097532.3_10	chr3	+	1173	3	NIC	ENSMUSG00000097532.3	novel	2559	2	NA	NA	-165	-87	combination_of_known_junctions	FALSE	canonical	3	156	junction_2	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGTTTGTTTTGCA	NA	False	NA	-79	True	AGTAAA	-19	NA	95334816	95338311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95335007_95335864_95336134_95337597
ENSMUSG00000097532.3_12	chr3	+	2531	1	NIC	ENSMUSG00000097532.3	novel	2559	2	NA	NA	-11	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACAACATCCAGTGTCTT	NA	False	NA	3	True	AGTAAA	-17	NA	95335862	95338393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95335900_95338400
ENSMUSG00000097532.3_2	chr3	+	2601	2	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-341	-3	intron_retention	FALSE	canonical	3	46	junction_1	0	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACATCCAGTGTCTTCC	NA	False	NA	5	True	AGTAAA	-19	NA	95334640	95338395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_95334711_95335864
ENSMUSG00000097532.3_3	chr3	+	804	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-342	-92	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	52.0917993119412	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTTTTTTTTGTTTGTT	NA	False	NA	-84	True	AGTAAA	-14	NA	95334639	95338306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_95334711_95335864_95336134_95337597_95337750_95337994
ENSMUSG00000097532.3_8	chr3	+	2761	2	FSM	ENSMUSG00000097532.3	ENSMUST00000181809.2	2559	2	-205	3	-205	-3	multi-exon	FALSE	canonical	3	169	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACATCCAGTGTCTTCC	NA	False	NA	5	True	AGTAAA	-19	NA	95334776	95338395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95335007_95335864
ENSMUSG00000097532.3_9	chr3	+	1084	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-240	-6	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	55.6437078403499	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAACAACATCCAGTGTCT	NA	False	NA	2	True	AGTAAA	-16	NA	95334741	95338392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_95335007_95335864_95336134_95337597_95337750_95337994
ENSMUSG00000097535.2_1	chr9	-	1522	2	FSM	ENSMUSG00000097535.2	ENSMUST00000180870.2	1730	2	368	-160	368	160	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATGAGATCTGACGCCCT	4149	False	NA	NA	False	NA	NA	NA	20948710	20945425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20946267_20948029
ENSMUSG00000097537.3_0	chr16	+	428	2	FSM	ENSMUSG00000097537.3	ENSMUST00000181526.3	2942	2	24	2490	24	-309	multi-exon	FALSE	canonical	1	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAACAAAAGAAAA	9723	False	NA	NA	False	NA	NA	NA	11021253	11041170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_11021612_11041100
ENSMUSG00000097543.2_2	chr12	+	2978	2	ISM	ENSMUSG00000097543.2	ENSMUST00000181667.2	3160	5	-2	22223	-2	-22223	intron_retention	FALSE	canonical	3	16	junction_1	0	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCTAGTCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86216112	86219653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_86216220_86216782
ENSMUSG00000097543.2_4	chr12	+	1246	3	NIC	ENSMUSG00000097543.2	novel	3160	5	NA	NA	19	-22223	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCTAGTCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86216133	86219653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_86216220_86216782_86217055_86218765
ENSMUSG00000097543.2_5	chr12	+	1366	4	ISM	ENSMUSG00000097543.2	ENSMUST00000181667.2	3160	5	28	22226	28	-22226	5prime_fragment	FALSE	canonical	0	0	junction_2	7.54247233265651	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACGCTAGTCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86216142	86219650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_86216220_86216782_86217055_86217167_86217300_86218765
ENSMUSG00000097545.8_0	chr14	+	3224	1	FSM	ENSMUSG00000092972.3	ENSMUST00000175231.3	87	1	-453	-2684	-453	2684	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAAGACCCATCTATAGT	NA	False	NA	15	True	AATAAA	-15	NA	64828180	64831404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_64828200_64831400
ENSMUSG00000097565.2_1	chr13	-	2501	6	FSM	ENSMUSG00000097565.2	ENSMUST00000167914.2	1520	6	1	-982	1	982	multi-exon	FALSE	canonical	1	2	junction_3	17.7268158449283	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTGTCTTTGGTCATGC	9249	False	NA	-3	True	NA	NA	NA	67674269	67638288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67668744_67668841_67669311_67669439_67674195
ENSMUSG00000097574.3_3	chr9	+	1417	4	FSM	ENSMUSG00000097574.3	ENSMUST00000180974.2	1444	4	22	5	22	-5	multi-exon	FALSE	canonical	3	12	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACATAGCCTTGGGATTT	NA	False	NA	-2	True	AATAAA	-9	NA	78083217	78086156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_78083318_78083852_78084025_78084280_78084376_78085106
ENSMUSG00000097574.3_6	chr9	+	2201	2	NIC	ENSMUSG00000097574.3	novel	1444	4	NA	NA	29	-5	intron_retention	FALSE	canonical	3	12	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACATAGCCTTGGGATTT	NA	False	NA	-2	True	AATAAA	-9	NA	78083224	78086156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_78084376_78085106
ENSMUSG00000097574.3_7	chr9	+	2381	2	ISM	ENSMUSG00000097574.3	ENSMUST00000180974.2	1444	4	34	16	34	-16	intron_retention	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGTAATGAAGACATAG	NA	False	NA	-13	True	NA	NA	NA	78083229	78086145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_78083318_78083852
ENSMUSG00000097576.3_0	chr16	+	713	1	NIC	ENSMUSG00000097576.3	novel	921	2	NA	NA	383	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGTGGAGTTTAGGGACT	NA	False	NA	NA	False	AATAAA	-30	NA	38273134	38273847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_38273100_38273800
ENSMUSG00000097577.3_0	chr14	-	965	3	FSM	ENSMUSG00000097577.3	ENSMUST00000180987.2	1554	3	6	583	6	-583	multi-exon	FALSE	canonical	2	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTTTAAAAAATATTTTT	NA	False	NA	NA	False	AATAAA	-10	NA	20753074	20737886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20738682_20738832_20738908_20752979
ENSMUSG00000097577.3_1	chr14	-	948	1	FSM	ENSMUSG00000097577.3	ENSMUST00000224976.2	1019	1	70	1	54	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCAAAATGGTGGACTTC	NA	False	NA	NA	False	AATAAA	-16	NA	20753026	20752078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_20752100_20753000
ENSMUSG00000097589.10_2	chr14	-	1112	1	FSM	ENSMUSG00000097589.10	ENSMUST00000193208.2	4098	1	2175	811	2175	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTTTGTATGTTTCTT	NA	False	NA	-4	True	AATAAA	-17	NA	61867166	61866054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_61866100_61867200
ENSMUSG00000097589.10_5	chr14	-	3558	3	FSM	ENSMUSG00000097589.10	ENSMUST00000180917.9	3544	3	36	-50	1	0	multi-exon	FALSE	canonical	2	7	junction_2	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAAGTTTTCTGTACGCTT	NA	False	NA	NA	False	AATAAA	-13	NA	61886235	61869747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_61873041_61880808_61880905_61886066
ENSMUSG00000097591.2_0	chr19	+	185	1	ISM	ENSMUSG00000097591.2	ENSMUST00000180609.2	1919	3	21298	1215	21298	-1215	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAGGTTTGAAAA	NA	False	NA	NA	False	NA	NA	NA	37172540	37172725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_37172500_37172700
ENSMUSG00000097603.4_0	chr6	+	175	1	FSM	ENSMUSG00000097603.4	ENSMUST00000203974.2	3187	1	1390	1622	1111	872	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGTAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	67143297	67143472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_67143300_67143500
ENSMUSG00000097604.2_0	chr9	+	1504	2	FSM	ENSMUSG00000097604.2	ENSMUST00000181289.2	2169	2	44	621	44	-621	multi-exon	FALSE	canonical	2	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACTTAATTTTTTTATTA	NA	False	NA	17	True	AATACA	-13	NA	57905367	57914113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_57905602_57912843
ENSMUSG00000097604.2_2	chr9	+	1225	1	ISM	ENSMUSG00000097604.2	ENSMUST00000181289.2	2169	2	7570	616	7570	-616	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTTTTTTATTATTTAT	1749	False	NA	22	True	AATACA	-18	NA	57912893	57914118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_57912900_57914100
ENSMUSG00000097615.2_0	chr1	-	2660	3	FSM	ENSMUSG00000097615.2	ENSMUST00000180623.2	2761	3	96	5	96	-5	multi-exon	FALSE	canonical	0	0	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTAAGTGTCTCAGTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	185187669	185179317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_185181412_185186201_185186331_185187232
ENSMUSG00000097616.8_5	chr6	+	1516	3	FSM	ENSMUSG00000097616.8	ENSMUST00000181225.2	1499	3	-17	0	-17	0	multi-exon	FALSE	canonical	3	16	junction_1	3.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACTGTTATGGATGATAG	11	True	NA	NA	False	AATAAA	-22	NA	13871550	13896421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_13871627_13881271_13881381_13895090
ENSMUSG00000097624.3_0	chr17	-	1144	5	FSM	ENSMUSG00000097624.3	ENSMUST00000181658.2	1179	5	37	-2	37	-2	multi-exon	FALSE	canonical	3	33	junction_2	9.14808723176599	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTCTCTTTTCTTTCTTT	NA	False	NA	-6	True	GATAAA	-14	NA	15461008	15451844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_15452674_15453041_15453145_15454190_15454265_15460531_15460624_15460962
ENSMUSG00000097624.3_1	chr17	-	1553	4	NIC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	2	4	intron_retention	FALSE	canonical	3	33	junction_1	9.39266853573691	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTTTCTTTCTTTCT	NA	False	NA	0	True	GATAAA	-20	NA	15461043	15451838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_15453145_15454190_15454265_15460531_15460624_15460962
ENSMUSG00000097624.3_2	chr17	-	1089	4	ISM	ENSMUSG00000097624.3	ENSMUST00000181658.2	1179	5	437	-8	437	4	3prime_fragment	FALSE	canonical	3	33	junction_2	5.24933858267454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTTTCTTTCTTTCT	NA	False	NA	0	True	GATAAA	-20	NA	15460608	15451838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_15452674_15453041_15453145_15454190_15454265_15460531
ENSMUSG00000097624.3_3	chr17	-	2564	3	NIC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	31	-2	intron_retention	FALSE	canonical	3	45	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTCTCTTTTCTTTCTTT	NA	False	NA	-6	True	GATAAA	-14	NA	15461014	15451844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_15454265_15460531_15460624_15460962
ENSMUSG00000097624.3_4	chr17	-	1158	5	NNC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	31	1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	14.4805904575746	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGTCTCTTTTCTTTCTT	NA	False	NA	-7	True	GATAAA	-13	NA	15461014	15451845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_15452674_15453032_15453145_15454190_15454265_15460531_15460624_15460962
ENSMUSG00000097624.3_6	chr17	-	940	3	NIC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	62	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	27.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTCTCTTTTCTTTCT	NA	False	NA	-8	True	GATAAA	-12	NA	15460983	15451846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_15452674_15460531_15460624_15460962
ENSMUSG00000097624.3_7	chr17	-	831	4	NNC	ENSMUSG00000097624.3	novel	1218	5	NA	NA	31	-4598	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	16.779617264871	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTGATCTCCGCTGCTC	NA	False	NA	NA	False	AGTAAA	-22	NA	15461014	15456444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_15456884_15457287_15457536_15460531_15460624_15460962
ENSMUSG00000097624.3_8	chr17	-	4222	2	ISM	ENSMUSG00000097624.3	ENSMUST00000181658.2	1179	5	40	4598	40	-4598	5prime_fragment	FALSE	canonical	3	56	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTGATCTCCGCTGCTC	NA	False	NA	NA	False	AGTAAA	-22	NA	15461005	15456444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_15460624_15460962
ENSMUSG00000097639.3_2	chr3	-	588	2	NNC	ENSMUSG00000097639.3	novel	2161	2	NA	NA	-1	-1453	at_least_one_novel_splicesite	FALSE	canonical	3	175	junction_1	0	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATTTAAAAGACCCTAG	NA	False	NA	NA	False	NA	NA	NA	41447626	41439911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_41440396_41447522
ENSMUSG00000097639.3_3	chr3	-	1093	2	FSM	ENSMUSG00000097639.3	ENSMUST00000199155.2	2161	2	1	1067	1	58	multi-exon	FALSE	canonical	3	87	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGGATTTGTCAATTT	NA	False	NA	55	True	NA	NA	NA	41447624	41443180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_41444172_41447522
ENSMUSG00000097639.3_5	chr3	-	536	2	NNC	ENSMUSG00000097639.3	novel	986	2	NA	NA	-1	-1453	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATTTAAAAGACCCTAG	NA	False	NA	NA	False	NA	NA	NA	41447626	41439911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_41440396_41447574
ENSMUSG00000097639.3_6	chr3	-	4312	2	FSM	ENSMUSG00000097639.3	ENSMUST00000181833.2	986	2	1	-3327	-1	-1453	multi-exon	FALSE	canonical	2	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATTTAAAAGACCCTAG	NA	False	NA	NA	False	NA	NA	NA	41447626	41439911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_41444172_41447574
ENSMUSG00000097640.8_1	chr5	-	1778	1	FSM	ENSMUSG00000097640.8	ENSMUST00000200143.2	1460	1	-308	-10	-27	10	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTTTAGTTCTGTGTA	NA	False	NA	NA	False	AATAAA	-24	NA	64961487	64959709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_64959700_64961500
ENSMUSG00000097651.3_0	chr9	+	823	3	FSM	ENSMUSG00000097651.3	ENSMUST00000181967.3	843	3	14	6	14	-6	multi-exon	FALSE	canonical	3	39	junction_1	1.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTAACTGTGGCTGATA	NA	False	NA	10	True	NA	NA	NA	58362418	58376912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_58362640_58374083_58374201_58376427
ENSMUSG00000097651.3_1	chr9	+	2284	2	ISM	ENSMUSG00000097651.3	ENSMUST00000181967.3	843	3	9993	10	9993	-10	3prime_fragment	FALSE	canonical	3	42	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGACATGTAACTGTGGCT	1840	False	NA	6	True	NA	NA	NA	58372397	58376908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_58374201_58376427
ENSMUSG00000097651.3_2	chr9	+	1312	1	NIC	ENSMUSG00000097651.3	novel	843	3	NA	NA	13182	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATATGTGAAGGACATGT	5029	False	NA	-4	True	NA	NA	NA	58375586	58376898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_58375600_58376900
ENSMUSG00000097662.2_0	chr15	+	2139	1	ISM	ENSMUSG00000097662.2	ENSMUST00000180518.2	3526	3	17681	0	17681	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATCTTTTTATGACTGC	7736	False	NA	NA	False	NA	NA	NA	4043201	4045340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_4043200_4045300
ENSMUSG00000097666.3_0	chr18	-	1248	2	FSM	ENSMUSG00000097666.3	ENSMUST00000180530.3	1269	2	24	-3	24	3	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGATTCTTCTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	77820415	77817192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_77818179_77820153
ENSMUSG00000097709.9_0	chr13	+	678	4	NIC	ENSMUSG00000097709.9	novel	2568	4	NA	NA	-19	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	13.1993265821489	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAAAAAGCCCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	3528210	3542396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_3528391_3529908_3530002_3535030_3535221_3542181
ENSMUSG00000097709.9_2	chr13	+	4183	1	Genic_Genomic	ENSMUSG00000097709.9	novel	NA	NA	NA	NA	7956	1181	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGTTCAAGTACTGTCA	NA	False	NA	NA	False	AATACA	-13	NA	3536281	3540464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_3536300_3540500
ENSMUSG00000097709.9_3	chr13	+	3309	3	NIC	ENSMUSG00000097709.9	novel	442	4	NA	NA	-19	8	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	16	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCACATGTGACTCTTAAT	NA	False	NA	NA	False	NA	NA	NA	3528210	3538066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_3528391_3529908_3530002_3535030
ENSMUSG00000097709.9_4	chr13	+	3100	4	FSM	ENSMUSG00000097709.9	ENSMUST00000186610.7	630	4	-83	-2387	-9	-756	multi-exon	FALSE	canonical	3	8	junction_3	9.84321537348893	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATATGATTTTGTACCA	NA	False	NA	NA	False	ATTAAA	-38	NA	3528220	3541650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_3528391_3529908_3530002_3535048_3535221_3538985
ENSMUSG00000097709.9_5	chr13	+	3054	4	FSM	ENSMUSG00000097709.9	ENSMUST00000191585.7	670	4	-17	-2367	-1	-756	multi-exon	FALSE	canonical	2	6	junction_1	5.24933858267454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATATGATTTTGTACCA	NA	False	NA	NA	False	ATTAAA	-38	NA	3528228	3541650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_3528353_3529908_3530002_3535048_3535221_3538985
ENSMUSG00000097709.9_6	chr13	+	3261	3	ISM	ENSMUSG00000097709.9	ENSMUST00000186610.7	630	4	-50	1184	-1	21	5prime_fragment	FALSE	canonical	3	18	junction_2	7	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAATAACTTTTCAAGCT	NA	False	NA	NA	False	NA	NA	NA	3528253	3538079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_3528391_3529908_3530002_3535048
ENSMUSG00000097727.9_2	chr17	+	1630	4	NIC	ENSMUSG00000097727.9	novel	735	5	NA	NA	24	-1339	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	46078144	46098181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_46078234_46087083_46087345_46090184_46090318_46097034
ENSMUSG00000097743.2_1	chr14	-	1374	1	ISM	ENSMUSG00000097743.2	ENSMUST00000180752.2	1972	2	1700	8	1700	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTCTAACAATTTGGAT	NA	False	NA	-11	True	AATAAA	-7	NA	56935118	56933744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_56933700_56935100
ENSMUSG00000097755.3_2	chr18	+	2619	4	NIC	ENSMUSG00000097755.3	novel	490	3	NA	NA	-94	-27	intron_retention	FALSE	canonical	1	2	junction_1	5.8878405775519	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAAATACAGTACTGTTG	NA	False	NA	9	True	AATAAA	-23	NA	34884767	34891711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_34885189_34887536_34889205_34889342_34889446_34891284
ENSMUSG00000097768.3_1	chr16	-	1698	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-16	-5	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAACAAATACACCTTTAAA	6555	False	NA	NA	False	AATAAA	-23	NA	93591805	93589028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_-_93590271_93590397_93590505_93591456
ENSMUSG00000097768.3_8	chr16	-	1727	2	FSM	ENSMUSG00000097768.3	ENSMUST00000180967.3	1580	2	-158	11	-158	-11	multi-exon	FALSE	canonical	3	7	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTGCATAACAAATACACC	6413	False	NA	NA	False	AATAAA	-17	NA	93591947	93589034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_93590271_93591456
ENSMUSG00000097772.8_0	chr5	-	598	5	FSM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	21	7	1	-7	multi-exon	FALSE	canonical	3	343	junction_4	12.3389626792531	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTGAAACATTAGAATG	NA	False	NA	10	True	AATAAA	-24	NA	100577373	100568707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
ENSMUSG00000097772.8_2	chr5	-	561	3	ISM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	2756	-312	2596	312	3prime_fragment	FALSE	canonical	3	360	junction_2	7.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTTTTCCTTTTTGGTA	NA	False	NA	-9	True	ATTAAA	-9	NA	100574638	100568388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_100568832_100569826_100569901_100574594
ENSMUSG00000097772.8_3	chr5	-	2873	4	NIC	ENSMUSG00000097772.8	novel	626	5	NA	NA	2	-23	intron_retention	FALSE	canonical	3	343	junction_3	13.0724477007517	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCAAAATAGTAAAA	NA	False	NA	-6	True	AATAAA	-8	NA	100577372	100568723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100568832_100569826_100569901_100574594_100577098_100577184
ENSMUSG00000097772.8_5	chr5	-	5276	4	NIC	ENSMUSG00000097772.8	novel	626	5	NA	NA	1	-23	intron_retention	FALSE	canonical	3	343	junction_3	14.0554457615387	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCAAAATAGTAAAA	NA	False	NA	-6	True	AATAAA	-8	NA	100577373	100568723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100568832_100569826_100574664_100576955_100577098_100577184
ENSMUSG00000097772.8_6	chr5	-	6286	3	FSM	ENSMUSG00000097772.8	ENSMUST00000180779.2	3486	3	3	-2803	2	-7	multi-exon	FALSE	canonical	3	343	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTGAAACATTAGAATG	NA	False	NA	10	True	AATAAA	-24	NA	100577372	100568707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100574664_100576955_100577098_100577184
ENSMUSG00000097772.8_7	chr5	-	2263	2	ISM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	5413	23	5253	-23	3prime_fragment	FALSE	canonical	3	375	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCAAAATAGTAAAA	220	False	NA	-6	True	AATAAA	-8	NA	100571981	100568723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_100568832_100569826
ENSMUSG00000097772.8_8	chr5	-	376	4	ISM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	314	23	154	-23	3prime_fragment	FALSE	canonical	3	348	junction_3	11.0453610171873	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCAAAATAGTAAAA	NA	False	NA	-6	True	AATAAA	-8	NA	100577080	100568723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955
ENSMUSG00000097779.3_1	chr19	+	2082	1	Genic_Genomic	ENSMUSG00000097779.3	novel	NA	NA	NA	NA	21	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGTACTTAAGACTCAGC	NA	False	NA	NA	False	AATAAA	-32	NA	53449073	53451155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_53449100_53451200
ENSMUSG00000097787.3_0	chr19	+	926	1	Genic_Genomic	ENSMUSG00000097787.3	novel	NA	NA	NA	NA	-7	-1056	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTGTCTGCTCCTGTG	NA	False	NA	NA	False	AATACA	-17	NA	32366608	32367534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_32366600_32367500
ENSMUSG00000097814.6_0	chr1	+	3793	2	FSM	ENSMUSG00000097814.6	ENSMUST00000181489.3	3849	2	49	7	37	-7	multi-exon	FALSE	canonical	3	20	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATAACATAATCATCTCT	NA	False	NA	-2	True	NA	NA	NA	96799994	96808952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_96800394_96805558
ENSMUSG00000097814.6_1	chr1	+	3544	2	NIC	ENSMUSG00000097814.6	novel	410	3	NA	NA	11	-4	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACATAATCATCTCTATT	NA	False	NA	1	True	NA	NA	NA	96799968	96808955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_96800116_96805558
ENSMUSG00000097814.6_2	chr1	+	3725	3	FSM	ENSMUSG00000097814.6	ENSMUST00000202118.2	410	3	11	-3326	11	-7	multi-exon	FALSE	canonical	3	11	junction_1	4.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATAACATAATCATCTCT	NA	False	NA	-2	True	NA	NA	NA	96799968	96808952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_96800116_96800209_96800394_96805558
ENSMUSG00000097814.6_3	chr1	+	3699	3	NNC	ENSMUSG00000097814.6	novel	410	3	NA	NA	37	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	8.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATAATCATCTCTATTAT	NA	False	NA	3	True	NA	NA	NA	96799994	96808957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_96800116_96800214_96800394_96805558
ENSMUSG00000097814.6_6	chr1	+	2450	1	ISM	ENSMUSG00000097814.6	ENSMUST00000181489.3	3849	2	6562	2	6550	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATAATCATCTCTATTAT	NA	False	NA	3	True	NA	NA	NA	96806507	96808957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_96806500_96809000
ENSMUSG00000097835.2_1	chr18	-	852	1	NIC	ENSMUSG00000097835.2	novel	698	2	NA	NA	25	-269	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGACTCACCACCTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	67907902	67907050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_67907000_67907900
ENSMUSG00000097848.3_1	chr13	+	1865	3	FSM	ENSMUSG00000097848.3	ENSMUST00000224929.2	408	3	-49	-1408	6	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGACGACTGGTCTTTAGC	6946	False	NA	NA	False	NA	NA	NA	99237219	99244088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_99237334_99239172_99239321_99242485
ENSMUSG00000097848.3_2	chr13	+	1722	2	FSM	ENSMUSG00000097848.3	ENSMUST00000181742.2	1723	2	0	1	0	-1	multi-exon	FALSE	canonical	3	15	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGACGACTGGTCTTTAG	6940	False	NA	NA	False	NA	NA	NA	99237213	99244087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_99237334_99242485
ENSMUSG00000097850.3_0	chr1	-	233	1	FSM	ENSMUSG00000065533.3	ENSMUST00000083599.3	68	1	66	-231	66	231	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTGCCTCTCTGCCCTA	8218	False	NA	NA	False	ATTAAA	-23	NA	193189772	193189539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_193189500_193189800
ENSMUSG00000097870.3_2	chr9	+	2781	1	Genic_Genomic	ENSMUSG00000097870.3	novel	NA	NA	NA	NA	5919	919	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCTACCTTTGTCCTTG	NA	False	NA	NA	False	NA	NA	NA	56519895	56522676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_+_56519900_56522700
ENSMUSG00000097878.6_0	chr10	+	1086	2	FSM	ENSMUSG00000097878.6	ENSMUST00000181179.5	1246	2	-1	161	-1	-161	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTCTTTCTTTTATTTA	NA	False	NA	NA	False	TTTAAA	-26	NA	103995865	103998173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_103995973_103997194
ENSMUSG00000097878.6_1	chr10	+	1100	2	FSM	ENSMUSG00000097878.6	ENSMUST00000181166.3	509	2	-24	-567	-24	-109	multi-exon	FALSE	canonical	3	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTGTGGATAAATTATAG	NA	False	NA	NA	False	AATACA	-19	NA	103996257	103998225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_103996327_103997194
ENSMUSG00000097893.9_0	chr1	+	1963	5	NIC	ENSMUSG00000097893.9	novel	555	5	NA	NA	-14	1344	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	1.78535710713571	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATTCACGTATTTTATT	NA	False	NA	NA	False	AATAAA	-9	NA	9818836	9842825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_9818871_9820582_9820631_9822673_9822790_9840896_9841021_9841184
ENSMUSG00000097908.8_0	chr5	+	3749	4	FSM	ENSMUSG00000097908.8	ENSMUST00000181045.8	3967	4	218	0	12	0	multi-exon	FALSE	canonical	3	48	junction_3	24.0878023535196	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTCAGCCTCGCTTTTTT	NA	False	NA	24	True	AATAAA	-13	NA	136948217	136965960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962592
ENSMUSG00000097908.8_1	chr5	+	601	4	FSM	ENSMUSG00000097908.8	ENSMUST00000197095.5	617	4	-1	17	-1	-17	multi-exon	FALSE	canonical	3	66	junction_3	17.326921891156	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATGAAAAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	136948204	136962522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962315
ENSMUSG00000097908.8_6	chr5	+	3642	3	ISM	ENSMUSG00000097908.8	ENSMUST00000181190.3	4058	5	2947	4	2947	2	3prime_fragment	FALSE	canonical	3	48	junction_2	14.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTCGCTTTTTTGT	NA	False	NA	26	True	AATAAA	-15	NA	136951201	136965962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_136951282_136954557_136954750_136962592
ENSMUSG00000097908.8_8	chr5	+	2582	1	ISM	ENSMUSG00000097908.8	ENSMUST00000181045.8	3967	4	15379	0	15124	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTCAGCCTCGCTTTTTT	1273	False	NA	24	True	AATAAA	-13	NA	136963378	136965960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_136963400_136966000
ENSMUSG00000097919.2_0	chr8	-	926	4	FSM	ENSMUSG00000097919.2	ENSMUST00000181333.2	758	4	15	-183	15	183	multi-exon	FALSE	canonical	0	0	junction_3	27.6043474836845	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCGGGTCCTGGTTTTT	NA	False	NA	-2	True	AATAAA	-12	NA	121394803	121335341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_121335770_121337932_121338077_121355210_121355257_121394495
ENSMUSG00000097929.10_1	chr12	+	2984	3	NNC	ENSMUSG00000097929.10	novel	3282	3	NA	NA	-142	-75	intron_retention	FALSE	canonical	3	11	junction_1	10.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACTATTGGTGTCGCCAA	NA	False	NA	NA	False	AATAAA	-13	NA	105303109	105350114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_105303253_105303488_105303819_105347603
ENSMUSG00000097929.10_2	chr12	+	1270	3	FSM	ENSMUSG00000097929.10	ENSMUST00000180458.9	3282	3	190	1822	190	-1820	multi-exon	FALSE	canonical	3	14	junction_1	9	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATTTGGAGAAGCACTT	NA	False	NA	32	True	AATAAA	-26	NA	105303042	105348369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105303217_105303488_105303819_105347603
ENSMUSG00000097929.10_4	chr12	+	1125	2	ISM	ENSMUSG00000097929.10	ENSMUST00000180503.3	2876	4	201	1827	201	-1827	intron_retention	FALSE	canonical	3	32	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAACCAAATATTTGGAGA	NA	False	NA	25	True	AATAAA	-19	NA	105303452	105348362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_105303819_105347603
ENSMUSG00000097929.10_5	chr12	+	2145	1	ISM	ENSMUSG00000097929.10	ENSMUST00000180458.9	3282	3	45192	2	44793	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATTTTATCTAATTTA	NA	False	NA	NA	False	AATAAA	-16	NA	105348044	105350189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_105348000_105350200
ENSMUSG00000097944.2_0	chr8	+	2524	1	FSM	ENSMUSG00000097944.2	ENSMUST00000183021.2	2323	1	-200	-1	-200	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGTTCATCCTGAATTCC	NA	False	NA	NA	False	AATAAA	-20	NA	120828120	120830644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_120828100_120830600
ENSMUSG00000097993.8_2	chr1	-	878	6	ISM	ENSMUSG00000097993.8	ENSMUST00000183317.8	6108	37	22376	0	246	0	3prime_fragment	FALSE	canonical	3	8	junction_5	3.5213633723318	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGTTGTGTCTGCTTCTGC	NA	False	NA	-1	True	AATAAA	-18	NA	135037956	135036235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_135036434_135036656_135036793_135037023_135037188_135037300_135037418_135037546_135037676_135037822
ENSMUSG00000097993.8_5	chr1	-	1372	1	NIC	ENSMUSG00000097993.8	novel	6108	37	NA	NA	-286	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCATGGTTGTGTCTGC	NA	False	NA	-7	True	AATAAA	-12	NA	135037613	135036241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_135036200_135037600
ENSMUSG00000098022.8_1	chr7	-	2299	1	FSM	ENSMUSG00000098022.8	ENSMUST00000183025.2	3276	1	545	432	545	-432	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAACAATGATTCCTATTT	NA	False	NA	NA	False	AATAAA	-7	NA	29756644	29754345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29754300_29756600
ENSMUSG00000098022.8_2	chr7	-	1877	5	NIC	ENSMUSG00000098022.8	novel	2181	7	NA	NA	23	-5	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	15.8804124631572	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATATAATGTGTTCCACT	NA	False	NA	NA	False	ATTAAA	-9	NA	29772302	29755467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29772205
ENSMUSG00000098022.8_5	chr7	-	2132	7	FSM	ENSMUSG00000098022.8	ENSMUST00000080834.15	2181	7	49	0	-32	0	multi-exon	FALSE	canonical	2	6	junction_6	14.682756326158	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGTTCCACTGTGTCC	NA	False	NA	NA	False	ATTAAA	-15	NA	29772276	29755461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29772205
ENSMUSG00000098022.8_8	chr7	-	2054	6	NIC	ENSMUSG00000098022.8	novel	2181	7	NA	NA	10	-5	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	15.0332963783729	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATATAATGTGTTCCACT	NA	False	NA	NA	False	ATTAAA	-9	NA	29772315	29755467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29772205
ENSMUSG00000098088.2_1	chr14	+	176	1	NIC	ENSMUSG00000098088.2	novel	352	2	NA	NA	754	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	259	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6006	False	NA	NA	False	NA	NA	NA	61867686	61867862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_61867700_61867900
ENSMUSG00000098090.9_1	chr17	+	448	5	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	4	19017	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_1	29.2232783924049	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGGCATGGTTCATTTTG	NA	False	NA	10	True	AATAAA	-15	NA	95057543	95101577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092936_95101454
ENSMUSG00000098090.9_11	chr17	+	1170	9	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	4	-3	combination_of_known_splicesites	FALSE	canonical	3	19	junction_6	52.9339210714642	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAAGTGTGGGTGTCCCC	NA	False	NA	NA	False	AATAAA	-8	NA	95057543	95082554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95069889_95070049_95071199_95071353_95074284_95074376_95078540_95078667_95079284_95079389_95082319
ENSMUSG00000098090.9_14	chr17	+	1259	10	FSM	ENSMUSG00000098090.9	ENSMUST00000182402.8	1275	10	16	0	4	0	multi-exon	FALSE	canonical	3	41	junction_3	42.4223328093547	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGGGTGTCCCCTCC	NA	False	NA	NA	False	AATAAA	-11	NA	95057543	95082557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ENSMUSG00000098090.9_22	chr17	+	1265	10	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	48.1350979465191	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGGGTGTCCCCTCC	NA	False	NA	NA	False	AATAAA	-11	NA	95057558	95082557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078540_95078667_95079284_95079389_95082319
ENSMUSG00000098090.9_4	chr17	+	353	4	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	4	19017	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_3	26.8493740874697	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGGCATGGTTCATTTTG	NA	False	NA	10	True	AATAAA	-15	NA	95057543	95101577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_95057661_95063861_95063952_95092912_95092936_95101454
ENSMUSG00000098090.9_5	chr17	+	6520	5	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	1	16815	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	71.1244507887407	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATTAGATTTAAAGTA	NA	False	NA	NA	False	NA	NA	NA	95057528	95099375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092936_95093195
ENSMUSG00000098098.8_1	chr18	+	613	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183087.2	588	3	-37	12	-37	-12	multi-exon	FALSE	canonical	3	52	junction_1	11.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAATGTACGAATGA	NA	False	NA	5	True	AATAAA	-5	NA	61772686	61780531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_61772840_61778233_61778437_61780274
ENSMUSG00000098098.8_3	chr18	+	4968	2	ISM	ENSMUSG00000098098.8	ENSMUST00000183087.2	588	3	1002	12	1002	-12	3prime_fragment	FALSE	canonical	3	75	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAATGTACGAATGA	NA	False	NA	5	True	AATAAA	-5	NA	61773725	61780531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_61778437_61780274
ENSMUSG00000098112.9_3	chr15	-	2011	11	FSM	ENSMUSG00000098112.9	ENSMUST00000183211.8	2036	11	16	9	-10	-3	multi-exon	TRUE	canonical	2	83	junction_1	21.2593508837876	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCGAGGTGTCTTGCCCT	NA	False	NA	-8	True	AATAAA	-14	NA	100567418	100538966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
ENSMUSG00000098132.2_0	chr7	+	2246	1	FSM	ENSMUSG00000098132.2	ENSMUST00000182858.2	3496	1	6	1244	6	-1244	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCTGACTGTTTACAT	NA	False	NA	NA	False	GATAAA	-14	NA	112553174	112555420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_112553200_112555400
ENSMUSG00000098134.2_0	chr12	+	1287	1	FSM	ENSMUSG00000098134.2	ENSMUST00000183146.2	1383	1	95	1	95	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACCCTGGTGTGATCTTT	NA	False	NA	9	True	AATAAA	-18	NA	84464064	84465351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_84464100_84465400
ENSMUSG00000098161.2_26	chr9	-	2006	4	Fusion	ENSMUSG00000098161.2_ENSMUSG00000103968.2	novel	388	4	NA	NA	-42	-12	multi-exon	FALSE	canonical	0	0	junction_3	19.9555060627944	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGGAGCCCACGCACAG	NA	False	NA	NA	False	AATAAA	-13	NA	118235209	118231544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr9_-_118233232_118233371_118233493_118233797_118233895_118235108
ENSMUSG00000098161.2_7	chr9	-	1704	5	Fusion	ENSMUSG00000098161.2_ENSMUSG00000103968.2	novel	388	4	NA	NA	-36	5355	multi-exon	FALSE	non_canonical	0	0	junction_1	20.7846096908265	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATGATGGTTCCCCATG	NA	False	NA	NA	False	AATAAA	-14	NA	118235203	118226177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr9_-_118227473_118232126_118232223_118233371_118233493_118233797_118233895_118235108
ENSMUSG00000098176.3_0	chr15	-	2040	1	FSM	ENSMUSG00000098176.3	ENSMUST00000182172.2	2584	1	532	12	519	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCACCTCAGCCCCGTT	NA	False	NA	NA	False	NA	NA	NA	75853772	75851732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75851700_75853800
ENSMUSG00000098176.3_1	chr15	-	1626	2	FSM	ENSMUSG00000098176.3	ENSMUST00000183130.3	2458	2	489	343	489	-343	multi-exon	FALSE	canonical	3	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGGACTTTGACCTGTTT	NA	False	NA	NA	False	AATATA	-16	NA	75853802	75852063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_75853537_75853649
ENSMUSG00000098188.2_0	chr10	+	4548	1	FSM	ENSMUSG00000098188.2	ENSMUST00000182161.2	4482	1	-74	8	-74	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCAAAGTGCTGAGTGTC	NA	False	NA	-3	True	AATAAA	-14	NA	59057700	59062248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_59057700_59062200
ENSMUSG00000098202.3_0	chr12	+	3811	1	ISM	ENSMUSG00000098202.3	ENSMUST00000182785.2	4505	2	3189	2	3189	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109665208	109669019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_109665200_109669000
ENSMUSG00000098211.3_0	chr8	+	1368	1	FSM	ENSMUSG00000098211.3	ENSMUST00000182145.3	1402	1	7	27	7	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAATAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	122268825	122270193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_122268800_122270200
ENSMUSG00000098234.8_0	chr1	-	1676	3	FSM	ENSMUSG00000098234.8	ENSMUST00000182819.8	816	3	-862	2	18	0	multi-exon	FALSE	canonical	3	538	junction_1	75	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014310	10012249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_10012381_10012547_10012617_10012834
ENSMUSG00000098234.8_2	chr1	-	2077	1	FSM	ENSMUSG00000093178.3	ENSMUST00000175437.3	87	1	-1552	-438	-1552	438	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014326	10012249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_10012200_10014300
ENSMUSG00000098234.8_3	chr1	-	407	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182580.8	473	4	0	66	0	0	multi-exon	FALSE	canonical	3	370	junction_3	129.892263049036	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014343	10012249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_10012381_10012547_10012617_10012834_10012943_10014244
ENSMUSG00000098234.8_4	chr1	-	401	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182742.2	400	4	-1	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	223.143202649977	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014343	10012249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_10012375_10012547_10012617_10012834_10012943_10014244
ENSMUSG00000098234.8_5	chr1	-	1888	2	ISM	ENSMUSG00000098234.8	ENSMUST00000182742.2	400	4	32	0	18	0	intron_retention	FALSE	canonical	3	144	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014310	10012249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_10012375_10012547
ENSMUSG00000098234.8_6	chr1	-	1683	3	ISM	ENSMUSG00000098234.8	ENSMUST00000182742.2	400	4	19	0	5	0	intron_retention	FALSE	canonical	3	144	junction_1	272	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014323	10012249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_10012375_10012547_10012617_10012834
ENSMUSG00000098234.8_8	chr1	-	353	2	ISM	ENSMUSG00000098234.8	ENSMUST00000182819.8	816	3	679	2	353	0	3prime_fragment	TRUE	canonical	3	538	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10012769	10012249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_10012381_10012547
ENSMUSG00000098274.8_0	chr16	+	557	6	FSM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	118	2	-28	-2	multi-exon	FALSE	canonical	3	9815	junction_1	1495.09793659145	2054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGGTGCTGATTGATTT	NA	False	NA	NA	False	AATAAA	-17	NA	55786755	55791796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
ENSMUSG00000098274.8_17	chr16	+	511	5	FSM	ENSMUSG00000098274.8	ENSMUST00000137811.8	639	5	126	2	0	-2	multi-exon	FALSE	canonical	3	12575	junction_2	609.402371180159	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGGTGCTGATTGATTT	NA	False	NA	NA	False	AATAAA	-17	NA	55786909	55791796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
ENSMUSG00000098306.10_1	chr1	+	622	2	FSM	ENSMUSG00000116158.2	ENSMUST00000178033.5	496	2	-126	0	-126	0	multi-exon	FALSE	canonical	3	48	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	8728	False	NA	4	True	AATAAA	-16	NA	133254823	133257460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_133255079_133257093
ENSMUSG00000098318.8_0	chr6	+	403	2	FSM	ENSMUSG00000098318.8	ENSMUST00000183867.7	5662	2	36	5223	-5	0	multi-exon	FALSE	canonical	3	145	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTACTGTTTCTGGGCTCTG	8001	False	NA	24	True	NA	NA	NA	134906090	134928538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_134906224_134928268
ENSMUSG00000098318.8_1	chr6	+	428	2	FSM	ENSMUSG00000098318.8	ENSMUST00000184504.2	544	2	-27	143	-5	0	multi-exon	FALSE	canonical	3	15	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTACTGTTTCTGGGCTCTG	8001	False	NA	24	True	NA	NA	NA	134906090	134928538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_134906249_134928268
ENSMUSG00000098318.8_5	chr6	+	176	1	ISM	ENSMUSG00000098318.8	ENSMUST00000183867.7	5662	2	25667	1864	25604	-1864	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAACACAGTAAAA	2580	False	NA	NA	False	NA	NA	NA	134931721	134931897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_134931700_134931900
ENSMUSG00000098318.8_6	chr6	+	365	2	NIC	ENSMUSG00000098318.8	novel	474	3	NA	NA	1	-14	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGGCTTAAGCCACTACT	7966	False	NA	10	True	NA	NA	NA	134906055	134928524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_134906165_134928268
ENSMUSG00000098332.3_0	chr9	+	477	2	FSM	ENSMUSG00000098332.3	ENSMUST00000184126.3	496	2	13	6	1	-6	multi-exon	FALSE	canonical	3	439	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATCTAAGTTATTTAT	NA	False	NA	NA	False	AATAAA	-13	NA	72947012	72950055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72947148_72949713
ENSMUSG00000098332.3_1	chr9	+	2296	1	FSM	ENSMUSG00000098332.3	ENSMUST00000184319.2	2639	1	-4	347	-4	-347	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGTGGGCGTCAGATCC	NA	False	NA	NA	False	NA	NA	NA	72947007	72949303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72947000_72949300
ENSMUSG00000098374.2_12	chr17	+	1631	6	ISM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	38043	2626	-22	-5	3prime_fragment	FALSE	canonical	3	393	junction_1	28.3224292743402	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTCATGTGGCTCTGTG	NA	False	NA	10	True	ATTAAA	-10	NA	29917611	29922327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
ENSMUSG00000098374.2_3	chr17	+	4972	29	NIC	ENSMUSG00000098374.2	novel	6521	28	NA	NA	18	0	intron_retention	TRUE	canonical	1	2	junction_7	106.921885228499	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGGCTCTGTGCTGGGC	NA	False	NA	16	True	ATTAAA	-16	NA	29833867	29922333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_29834053_29840482_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
ENSMUSG00000098374.2_7	chr17	+	1993	8	ISM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	36382	2626	-1683	-5	3prime_fragment	FALSE	canonical	3	393	junction_3	25.0142816349838	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTCATGTGGCTCTGTG	NA	False	NA	10	True	ATTAAA	-10	NA	29915950	29922327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
ENSMUSG00000098557.2_0	chr14	-	3129	1	FSM	ENSMUSG00000098557.2	ENSMUST00000184744.2	6057	1	2922	6	1836	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTACTCCCCCTGGTTCCT	2018	False	NA	NA	False	AATAAA	-15	NA	103217151	103214022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_103214000_103217200
ENSMUSG00000098702.2_0	chr18	+	1843	1	FSM	ENSMUSG00000098702.2	ENSMUST00000184181.2	1865	1	18	4	18	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCAACTTGGTCAGACT	NA	False	NA	NA	False	AATAAA	-13	NA	61859478	61861321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_61859500_61861300
ENSMUSG00000098702.2_1	chr18	+	895	2	FSM	ENSMUSG00000098702.2	ENSMUST00000184678.2	890	2	-14	9	-14	-1	multi-exon	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCACTACACCCGATCTC	NA	False	NA	2	True	AATAAA	-16	NA	61859489	61868979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_61860074_61868668
ENSMUSG00000098789.8_1	chr2	+	1276	8	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-10	-1	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	46.6533022651655	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACACTTGTTCTCATGTTC	NA	False	NA	5	True	NA	NA	NA	119857974	119863074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119858058_119860623_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
ENSMUSG00000098789.8_4	chr2	+	2060	5	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-4	-6	intron_retention	FALSE	canonical	3	17	junction_1	58.2167286954532	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGATACACTTGTTCTCA	NA	False	NA	0	True	NA	NA	NA	119857980	119863069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119858058_119860623_119860693_119860769_119861024_119861296_119862482_119862594
ENSMUSG00000098789.8_5	chr2	+	1339	8	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	55.0810163971848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACACTTGTTCTCATGT	NA	False	NA	3	True	NA	NA	NA	119857982	119863072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119858058_119860623_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119861982_119862133_119862321_119862482_119862594
ENSMUSG00000098894.2_2	chr9	+	1104	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-5406	461	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAATGGTGAAGGTTTA	NA	False	NA	NA	False	AATAAA	-7	NA	76221452	76228589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_76221574_76226917_76227020_76227708
ENSMUSG00000098894.2_4	chr9	+	996	2	FSM	ENSMUSG00000098894.2	ENSMUST00000183362.2	581	2	-421	6	-421	-6	multi-exon	FALSE	canonical	3	21	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCATTTTGCAGACTTGA	NA	False	NA	NA	False	AATAAA	-16	NA	76226437	76228122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_76227020_76227708
ENSMUSG00000098905.3_0	chr13	-	4691	4	FSM	ENSMUSG00000098905.3	ENSMUST00000081582.8	4677	4	-17	3	-17	-3	multi-exon	FALSE	canonical	3	11	junction_1	6.64997911442	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGCTGAGGCTGGAGAAG	NA	False	NA	NA	False	NA	NA	NA	67508741	67487372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67491722_67493413_67493510_67495906_67496034_67508622
ENSMUSG00000098905.3_2	chr13	-	3423	1	ISM	ENSMUSG00000098905.3	ENSMUST00000081582.8	4677	4	17929	3	17929	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGCTGAGGCTGGAGAAG	9686	False	NA	NA	False	NA	NA	NA	67490795	67487372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67487400_67490800
ENSMUSG00000098923.2_0	chr1	+	2073	1	FSM	ENSMUSG00000098923.2	ENSMUST00000183952.2	2824	1	-8	759	-8	-759	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTCTGTGTGAAGATAT	NA	False	NA	33	True	NA	NA	NA	119453881	119455954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_119453900_119456000
ENSMUSG00000098923.2_1	chr1	+	1682	2	FSM	ENSMUSG00000098923.2	ENSMUST00000183607.2	681	2	-6	-995	-6	-759	multi-exon	FALSE	canonical	2	5	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTCTGTGTGAAGATAT	NA	False	NA	33	True	NA	NA	NA	119453896	119455954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_119454278_119454653
ENSMUSG00000098950.8_8	chr2	-	5418	18	NIC	ENSMUSG00000098950.8	novel	5505	17	NA	NA	-8	3	combination_of_known_junctions	FALSE	canonical	2	4	junction_15	88.4872090144646	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCCGCTCTTGTTGTGT	NA	False	NA	0	True	AATAAA	-21	NA	155953829	155913761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155938337_155940293_155945268_155945318_155953705
ENSMUSG00000099032.3_0	chr1	-	3971	3	NNC	ENSMUSG00000099032.3	novel	4193	2	NA	NA	10	2	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_2	5.5	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATCTGTGTCTGTTAA	-10	True	NA	NA	False	AATAAA	-11	NA	10038147	10030393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_10033747_10037323_10037743_10037948
ENSMUSG00000099032.3_1	chr1	-	3970	3	NNC	ENSMUSG00000099032.3	novel	4193	2	NA	NA	33	2	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	6	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATCTGTGTCTGTTAA	13	True	NA	NA	False	AATAAA	-11	NA	10038124	10030393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_10033747_10037323_10037743_10037926
ENSMUSG00000099041.2_1	chr2	+	4303	14	NIC	ENSMUSG00000099041.2	novel	4238	13	NA	NA	-2838	-12	intron_retention	FALSE	canonical	1	7	junction_4	24.4586355316687	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTAAAATATATTTTATAT	NA	False	NA	NA	False	AATAAA	-5	NA	30127740	30172148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_30127818_30130580_30130690_30145179_30147345_30151859_30152439_30156874_30156954_30159700_30159860_30164481_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUSG00000099041.2_2	chr2	+	4209	3	ISM	ENSMUSG00000007476.19	ENSMUST00000095078.3	4301	4	2847	8	2847	-3	3prime_fragment	FALSE	canonical	3	48	junction_2	27.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGTTGCCTTTGGAGGT	NA	False	NA	-1	True	AATAAA	-7	NA	30130580	30153794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30130690_30145179_30147345_30151859
ENSMUSG00000099041.2_5	chr2	+	3327	2	ISM	ENSMUSG00000007476.19	ENSMUST00000095078.3	4301	4	18226	1	18226	-1	3prime_fragment	FALSE	canonical	3	48	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGGAGGTCTCCATG	NA	False	NA	6	True	AATAAA	-14	NA	30145959	30153801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_+_30147345_30151859
ENSMUSG00000099083.8_1	chr15	-	2924	1	FSM	ENSMUSG00000099083.8	ENSMUST00000096143.2	390	1	-2544	10	-2544	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAATGACTGGTATGTT	NA	False	NA	-11	True	ATTAAA	-6	NA	102440004	102437080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102437100_102440000
ENSMUSG00000099083.8_11	chr15	-	165	1	ISM	ENSMUSG00000099083.8	ENSMUST00000183727.8	2066	7	79313	250	-17100	-250	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAAACAATCTTT	NA	False	NA	NA	False	NA	NA	NA	102454560	102454395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_102454400_102454600
ENSMUSG00000099083.8_2	chr15	-	7080	12	FSM	ENSMUSG00000099083.8	ENSMUST00000184485.8	2523	12	362	-4919	-4	-17	multi-exon	FALSE	canonical	3	29	junction_11	8.85605736578731	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTATCAAGAGAATGACTG	NA	False	NA	-18	True	AATATA	-7	NA	102533512	102437087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106_102502176_102533473
ENSMUSG00000099083.8_3	chr15	-	2252	12	FSM	ENSMUSG00000099083.8	ENSMUST00000184616.8	7147	12	-14	4909	0	27	multi-exon	FALSE	canonical	3	22	junction_11	10.1696355688543	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGTTTGAATCATTTTT	NA	False	NA	NA	False	AAAAAG	-9	NA	102533899	102441979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106_102502176_102533796
ENSMUSG00000099083.8_4	chr15	-	7052	11	ISM	ENSMUSG00000099083.8	ENSMUST00000184616.8	7147	12	31709	7	31181	-7	3prime_fragment	TRUE	canonical	3	31	junction_9	7.51598296964542	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGACTGGTATGTTTGG	8643	False	NA	-8	True	ATTAAA	-9	NA	102502176	102437077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106
ENSMUSG00000099098.5_0	chr7	+	1265	1	FSM	ENSMUSG00000099098.5	ENSMUST00000184073.2	1241	1	-26	2	-26	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCGTGTGTGTGTATGT	NA	False	NA	NA	False	AATAAA	-21	NA	28855078	28856343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28855100_28856300
ENSMUSG00000099338.2_0	chr8	+	870	1	FSM	ENSMUSG00000099338.2	ENSMUST00000190461.2	1039	1	-13	182	11	-182	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTCTCTCCCTC	NA	False	NA	NA	False	AATACA	-23	NA	13250738	13251608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_13250700_13251600
ENSMUSG00000099370.2_0	chr3	-	1796	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	25	junction_2	102.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTTCTCATGGTCATGG	NA	False	NA	-7	True	NA	NA	NA	75563043	75554754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_75556298_75562696_75562869_75562962
ENSMUSG00000099370.2_1	chr3	-	1809	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	1	-2	intron_retention	FALSE	canonical	3	11	junction_2	109.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTTCTCATGGTCATGG	NA	False	NA	-7	True	NA	NA	NA	75563037	75554754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_75556298_75562696_75562888_75562962
ENSMUSG00000099370.2_11	chr3	-	112	1	Genic_Genomic	ENSMUSG00000099370.2	novel	NA	NA	NA	NA	-3	-7783	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTAGCTTGTCTTGGTTC	NA	False	NA	-5	True	NA	NA	NA	75563041	75562929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_-_75562900_75563000
ENSMUSG00000099370.2_2	chr3	-	1032	1	FSM	ENSMUSG00000099370.2	ENSMUST00000191479.2	818	1	176	-390	176	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACTGTTCTCATGGTCAT	1143	False	NA	-9	True	NA	NA	NA	75555788	75554756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_75554800_75555800
ENSMUSG00000099370.2_3	chr3	-	1306	2	ISM	ENSMUSG00000099370.2	ENSMUST00000190602.2	1026	3	48	533	48	-139	5prime_fragment	FALSE	canonical	3	230	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTGGTCTCCATTCTTTT	NA	False	NA	-1	True	AATAAA	-18	NA	75562990	75555285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_75556298_75562696
ENSMUSG00000099370.2_4	chr3	-	1775	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-20	-7	intron_retention	FALSE	canonical	3	71	junction_2	79.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAACTGTTCTCATGGT	NA	False	NA	-12	True	NA	NA	NA	75563058	75554759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_75556298_75562696_75562869_75562993
ENSMUSG00000099370.2_5	chr3	-	925	3	FSM	ENSMUSG00000099370.2	ENSMUST00000190602.2	1026	3	99	2	99	-2	multi-exon	FALSE	canonical	3	42	junction_1	94	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTTCTCATGGTCATGG	NA	False	NA	-7	True	NA	NA	NA	75562939	75554754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_75555246_75556106_75556298_75562696
ENSMUSG00000099417.2_0	chr7	+	1309	2	FSM	ENSMUSG00000099417.2	ENSMUST00000190841.2	971	2	3	-341	3	341	multi-exon	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCTCAAAATCTCTTTTAA	4395	False	NA	NA	False	NA	NA	NA	28191977	28197479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_28192135_28196327
ENSMUSG00000099471.2_0	chr1	-	141	1	FSM	ENSMUSG00000099471.2	ENSMUST00000170338.3	447	1	343	-37	343	37	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	127210502	127210361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_127210400_127210500
ENSMUSG00000099474.2_0	chr17	-	807	4	FSM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	28	10	28	-10	multi-exon	FALSE	canonical	3	145	junction_3	117.235754879739	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGACCGAATTCTTTC	NA	False	NA	-11	True	AATAAA	-15	NA	30845851	30841424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_30841669_30843173_30843588_30843854_30843908_30845755
ENSMUSG00000099474.2_1	chr17	-	2423	2	NIC	ENSMUSG00000099474.2	novel	845	4	NA	NA	1765	-10	intron_retention	FALSE	canonical	3	280	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGACCGAATTCTTTC	NA	False	NA	-11	True	AATAAA	-15	NA	30844114	30841424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_30843588_30843854
ENSMUSG00000099474.2_2	chr17	-	958	3	NNC	ENSMUSG00000099474.2	novel	845	4	NA	NA	-818	-10	at_least_one_novel_splicesite	FALSE	canonical	3	186	junction_2	123	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGACCGAATTCTTTC	NA	False	NA	-11	True	AATAAA	-15	NA	30846697	30841424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_30841669_30845755_30846170_30846397
ENSMUSG00000099474.2_3	chr17	-	334	2	ISM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	2616	10	2616	-10	3prime_fragment	FALSE	canonical	3	432	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGACCGAATTCTTTC	NA	False	NA	-11	True	AATAAA	-15	NA	30843263	30841424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_30841669_30843173
ENSMUSG00000099474.2_4	chr17	-	955	3	ISM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	1728	10	1728	-10	3prime_fragment	FALSE	canonical	3	280	junction_2	76	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGACCGAATTCTTTC	NA	False	NA	-11	True	AATAAA	-15	NA	30844151	30841424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_30841669_30843173_30843588_30843854
ENSMUSG00000099481.7_10	chr7	+	2384	7	ISM	ENSMUSG00000099481.7	ENSMUST00000094130.4	2298	11	-27	2786	-27	0	intron_retention	FALSE	canonical	3	50	junction_1	21.6544837543329	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-21	NA	101714937	101729502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939
ENSMUSG00000099481.7_2	chr7	+	1945	11	NIC	ENSMUSG00000099481.7	novel	2298	11	NA	NA	-23	35	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	31.3434203621749	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATGAGTCTTGAGTGT	NA	False	NA	8	True	TATAAA	-22	NA	101714941	101731833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728105_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ENSMUSG00000099481.7_21	chr7	+	1996	11	NIC	ENSMUSG00000099481.7	novel	2298	11	NA	NA	23	73	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	28.9048438847194	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACCTTGACCTTCTGTGT	NA	False	NA	46	True	NA	NA	NA	101714987	101731871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101715150_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ENSMUSG00000099481.7_3	chr7	+	3215	11	FSM	ENSMUSG00000100254.2_ENSMUSG00000099481.7	ENSMUST00000094130.4	2298	11	-245	-672	2	-9	multi-exon	FALSE	canonical	3	50	junction_1	17.4482090771517	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGACAGTATGTGTTGC	NA	False	NA	NA	False	AATAAA	-7	NA	101714719	101732960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ENSMUSG00000099481.7_37	chr7	+	1823	2	FSM	ENSMUSG00000100254.2_ENSMUSG00000099481.7	ENSMUST00000143839.2	1031	2	440	-1232	440	-9	multi-exon	FALSE	canonical	3	103	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGACAGTATGTGTTGC	NA	False	NA	NA	False	AATAAA	-7	NA	101730707	101732960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101730818_101731247
ENSMUSG00000099481.7_38	chr7	+	1006	1	ISM	ENSMUSG00000099481.7	ENSMUST00000106950.8	3131	10	17237	9	1687	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGACAGTATGTGTTGC	NA	False	NA	NA	False	AATAAA	-7	NA	101731954	101732960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101732000_101733000
ENSMUSG00000099481.7_44	chr7	+	3088	10	FSM	ENSMUSG00000099481.7	ENSMUST00000106950.8	3131	10	34	9	23	-9	multi-exon	FALSE	canonical	2	5	junction_1	31.0606734006004	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGACAGTATGTGTTGC	NA	False	NA	NA	False	AATAAA	-7	NA	101714751	101732960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_101715012_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ENSMUSG00000099481.7_58	chr7	+	1951	3	ISM	ENSMUSG00000099481.7	ENSMUST00000142629.8	2216	5	1711	12	-563	-9	3prime_fragment	FALSE	canonical	3	84	junction_1	9.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGACAGTATGTGTTGC	NA	False	NA	NA	False	AATAAA	-7	NA	101729701	101732960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101729812_101730689_101730818_101731247
ENSMUSG00000099481.7_6	chr7	+	2051	11	NIC	ENSMUSG00000099481.7	novel	2298	11	NA	NA	1	29	combination_of_known_junctions	FALSE	canonical	2	17	junction_2	28.6462912084619	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGAGTGAATGAGTCTT	NA	False	NA	2	True	TATAAA	-16	NA	101714718	101731827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_101715012_101719103_101719199_101720425_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ENSMUSG00000099519.2_1	chr1	-	528	4	ISM	ENSMUSG00000026198.16	ENSMUST00000160081.8	3772	16	7640	-2	223	0	3prime_fragment	FALSE	canonical	3	155	junction_1	13.9283882771841	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCTGTGGTTTGGTTGTG	NA	False	NA	-2	True	AATAAA	-15	NA	75149290	75148360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198
ENSMUSG00000099647.2_0	chr7	-	578	1	FSM	ENSMUSG00000099647.2	ENSMUST00000122119.2	321	1	-13	-244	-13	244	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GACTGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-9	NA	54062239	54061661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_54061700_54062200
ENSMUSG00000099681.2_0	chr11	-	1502	1	FSM	ENSMUSG00000099681.2	ENSMUST00000190120.2	3708	1	91	2115	91	-2115	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATATGGCCTGCAAC	NA	False	NA	NA	False	AATAAA	-5	NA	105072168	105070666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_105070700_105072200
ENSMUSG00000099689.7_0	chr7	+	2581	5	FSM	ENSMUSG00000099689.7	ENSMUST00000186475.2	2614	5	32	1	32	-1	multi-exon	FALSE	canonical	3	26	junction_4	3.53553390593274	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAAGTTTCATAATTTT	NA	False	NA	26	True	AATAAA	-23	NA	29607973	29616231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_29608077_29609607_29609673_29611593_29611721_29612014_29612111_29614041
ENSMUSG00000099689.7_1	chr7	+	3597	4	NNC	ENSMUSG00000099689.7	novel	3208	4	NA	NA	30	-995	intron_retention	FALSE	canonical	0	0	junction_3	14.9740516301441	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTACTCTCTGGCATTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	29607971	29615237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_29608077_29609607_29609673_29611593_29612188_29612404
ENSMUSG00000099689.7_10	chr7	+	1860	1	ISM	ENSMUSG00000099689.7	ENSMUST00000187028.7	3208	4	6724	7	6430	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAAGTTTCATAATTTT	NA	False	NA	26	True	AATAAA	-23	NA	29614371	29616231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_29614400_29616200
ENSMUSG00000099759.2_8	chr12	-	4123	2	NNC	ENSMUSG00000099759.2	novel	1735	2	NA	NA	20	-6977	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGGCCATGAGTCTCTTA	NA	False	NA	-7	True	AATAAA	-43	NA	20865760	20861358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_20865068_20865346
ENSMUSG00000099764.2_0	chr16	-	555	1	FSM	ENSMUSG00000099764.2	ENSMUST00000127484.2	496	1	-29	-30	-29	30	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-1	NA	20641419	20640864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_20640900_20641400
ENSMUSG00000099843.2_0	chr1	-	429	3	FSM	ENSMUSG00000099843.2	ENSMUST00000185535.2	471	3	50	-8	20	8	multi-exon	FALSE	canonical	2	5	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAACAGCCTTGCATTC	NA	False	NA	NA	False	NA	NA	NA	105917962	105907071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_105907355_105916748_105916834_105917901
ENSMUSG00000099847.2_0	chr13	-	648	2	FSM	ENSMUSG00000099847.2	ENSMUST00000187093.2	354	2	-61	-233	-61	233	multi-exon	FALSE	canonical	3	19	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTTCTACCCTCCTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	37637245	37635954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_37636445_37637087
ENSMUSG00000099881.2_0	chr8	+	1967	1	FSM	ENSMUSG00000099881.2	ENSMUST00000186531.2	2137	1	163	7	163	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACTCATGTTTTACC	NA	False	NA	2	True	NA	NA	NA	123769367	123771334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123769400_123771300
ENSMUSG00000099902.2_0	chr11	+	577	1	FSM	ENSMUSG00000099902.2	ENSMUST00000119969.2	447	1	-36	-94	-36	94	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATATGAAAAAAAAAAGAATT	NA	False	NA	NA	False	ATTAAA	-7	NA	33122882	33123459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_33122900_33123500
ENSMUSG00000099927.2_0	chr9	+	856	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-19	-39	-19	39	mono-exon	FALSE	NA	NA	NA	NA	NA	581	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-10	NA	84306017	84306873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_84306000_84306900
ENSMUSG00000099928.2_0	chr11	+	608	2	NNC	ENSMUSG00000099928.2	novel	422	3	NA	NA	1452	37	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATGTGAAATGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	95898166	95898918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_95898430_95898573
ENSMUSG00000099966.2_0	chr14	+	2173	1	FSM	ENSMUSG00000099966.2	ENSMUST00000190699.2	3040	1	11	856	11	-856	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAGGAAAAAA	2602	False	NA	NA	False	NA	NA	NA	20691087	20693260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_20691100_20693300
ENSMUSG00000100002.3_0	chr9	+	2267	2	NNC	ENSMUSG00000100002.3	novel	921	3	NA	NA	-230	-6039	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCTTTTGACTGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	25063179	25080818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_25063484_25078855
ENSMUSG00000100029.2_1	chr7	+	539	2	FSM	ENSMUSG00000100029.2	ENSMUST00000189744.2	928	2	396	-7	396	7	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATTTGTGCCCAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	30584851	30585878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30585156_30585643
ENSMUSG00000100084.3_0	chr15	-	1122	1	FSM	ENSMUSG00000100084.3	ENSMUST00000188271.3	1130	1	3	5	3	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAATTATTTTTACTAGA	4289	False	NA	NA	False	AATAAA	-14	NA	99871165	99870043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99870000_99871200
ENSMUSG00000100131.2_0	chr1	-	645	1	FSM	ENSMUSG00000067736.3	ENSMUST00000088336.3	294	1	0	-351	0	351	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTATTTGAAGCAACC	NA	False	NA	NA	False	NA	NA	NA	24651781	24651136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_24651100_24651800
ENSMUSG00000100153.3_0	chr7	+	2312	1	FSM	ENSMUSG00000100153.3	ENSMUST00000118909.2	972	1	-217	-1123	-15	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1702	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119339133	119341445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_119339100_119341400
ENSMUSG00000100153.3_1	chr7	+	1445	2	FSM	ENSMUSG00000100153.3	ENSMUST00000207161.2	1437	2	-12	4	-12	-4	multi-exon	FALSE	canonical	3	469	junction_1	0	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119339136	119341445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_119340294_119341157
ENSMUSG00000100164.2_0	chr6	-	1011	1	FSM	ENSMUSG00000100164.2	ENSMUST00000185414.2	1042	1	23	8	23	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTATAGGTTATTTTT	NA	False	NA	NA	False	AATACA	-16	NA	86826399	86825388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_86825400_86826400
ENSMUSG00000100199.2_0	chr15	+	763	3	NIC	ENSMUSG00000100199.2	novel	1118	4	NA	NA	-15	-16	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTTGTCATTGATGTT	NA	False	NA	NA	False	AATAAA	-4	NA	82783265	82790003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_82783470_82785916_82786016_82789543
ENSMUSG00000100215.2_0	chr1	+	468	1	FSM	ENSMUSG00000100215.2	ENSMUST00000162574.2	396	1	-7	-65	-7	65	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCTGAGAGGACAAACTA	NA	False	NA	NA	False	NA	NA	NA	55374552	55375020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_55374600_55375000
ENSMUSG00000100235.9_0	chr13	-	2051	1	ISM	ENSMUSG00000058883.17	ENSMUST00000109742.11	2416	4	10057	6	10057	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTATCGTCAGTGTCGTG	NA	False	NA	-5	True	AATAAA	-14	NA	67219519	67217468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_67217500_67219500
ENSMUSG00000100235.9_2	chr13	-	3887	7	FSM	ENSMUSG00000100235.9	ENSMUST00000186303.7	3886	7	-7	6	-7	-6	multi-exon	FALSE	canonical	1	2	junction_1	5.63964143856288	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTATCGTCAGTGTCGTG	NA	False	NA	-5	True	AATAAA	-14	NA	67256620	67217468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67219593_67222149_67222246_67222896_67223024_67245856_67247112_67250106_67250200_67250761_67250846_67256512
ENSMUSG00000100235.9_8	chr13	-	3945	7	NIC	ENSMUSG00000100235.9	novel	3886	7	NA	NA	22	-6	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	5.33593686452737	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTATCGTCAGTGTCGTG	NA	False	NA	-5	True	AATAAA	-14	NA	67256636	67217468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_67219593_67222149_67222246_67222896_67223024_67245856_67247112_67250106_67250200_67250761_67250888_67256512
ENSMUSG00000100309.2_0	chr1	-	1154	1	FSM	ENSMUSG00000100309.2	ENSMUST00000186507.2	951	1	147	-350	147	350	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGCTTTTGTGAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-3	NA	55484036	55482882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_55482900_55484000
ENSMUSG00000100320.2_1	chr18	-	1479	2	FSM	ENSMUSG00000100320.2	ENSMUST00000188160.2	571	2	14	-922	14	922	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGAGATGCCTGGGCTTG	NA	False	NA	NA	False	AATAAA	-18	NA	35964132	35962519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_35963617_35963750
ENSMUSG00000100394.2_0	chr1	-	201	1	FSM	ENSMUSG00000100394.2	ENSMUST00000185888.2	1779	1	1572	6	1572	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTCTCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152754477	152754276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_152754300_152754500
ENSMUSG00000100417.3_1	chr19	-	176	1	ISM	ENSMUSG00000100417.3	ENSMUST00000187727.2	2698	2	2436	228	2434	-226	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAATAGAATACTATTT	NA	False	NA	NA	False	NA	NA	NA	45324312	45324136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_45324100_45324300
ENSMUSG00000100417.3_2	chr19	-	366	2	NIC	ENSMUSG00000100417.3	novel	797	5	NA	NA	46	2	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTGATGCGTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	45299483	45288906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_45289200_45299410
ENSMUSG00000100455.2_0	chr1	+	2783	1	FSM	ENSMUSG00000100455.2	ENSMUST00000190224.2	3666	1	-365	1248	-365	-1248	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATGTAGTCTTGGGAA	NA	False	NA	NA	False	GATAAA	-15	NA	143653014	143655797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_143653000_143655800
ENSMUSG00000100490.2_1	chr7	+	1869	1	Genic_Genomic	ENSMUSG00000100490.2	novel	NA	NA	NA	NA	8416	921	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATACTTCTGTAGTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	39147277	39149146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_+_39147300_39149100
ENSMUSG00000100572.2_1	chr17	-	4999	2	ISM	ENSMUSG00000100572.2	ENSMUST00000187090.2	764	3	41	-3412	41	3412	intron_retention	FALSE	canonical	3	43	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAATAATGTTGTTTTTG	NA	False	NA	NA	False	TATAAA	-9	NA	69584162	69578944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_69582902_69583120
ENSMUSG00000100572.2_12	chr17	-	3408	2	NIC	ENSMUSG00000100572.2	novel	764	3	NA	NA	16	2441	intron_retention	FALSE	canonical	3	57	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCTATCAAAAACATCCCA	NA	False	NA	-14	True	ATTAAA	-4	NA	69584187	69579915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_69583191_69584054
ENSMUSG00000100572.2_4	chr17	-	3216	3	FSM	ENSMUSG00000100572.2	ENSMUST00000187090.2	764	3	1	-2453	1	2453	multi-exon	FALSE	canonical	3	43	junction_1	7	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCCCACAGCCAATTCAT	NA	False	NA	-2	True	ATTAAA	-16	NA	69584202	69579903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_69582902_69583120_69583191_69584054
ENSMUSG00000100572.2_9	chr17	-	754	3	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	2	7	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	21.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGAACGTATGTCCTGAC	NA	False	NA	NA	False	NA	NA	NA	69584201	69582349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_69582887_69583120_69583191_69584054
ENSMUSG00000100599.3_0	chr15	+	176	1	FSM	ENSMUSG00000100599.3	ENSMUST00000190683.2	1428	1	1252	0	1252	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	99150970	99151146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_99151000_99151100
ENSMUSG00000100605.2_0	chr8	+	473	4	FSM	ENSMUSG00000100605.2	ENSMUST00000188318.2	418	4	-58	3	-58	-3	multi-exon	FALSE	canonical	3	16	junction_3	5.71547606649408	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTCACTTACTCTTTCT	NA	False	NA	NA	False	ATTAAA	-38	NA	34683954	34693296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_34684111_34688020_34688119_34691015_34691123_34693184
ENSMUSG00000100680.2_0	chr6	+	469	2	FSM	ENSMUSG00000100680.2	ENSMUST00000186472.2	486	2	13	4	13	-4	multi-exon	FALSE	canonical	2	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGTTTGTCTACACTCA	NA	False	NA	NA	False	ATTAAA	-12	NA	91417981	91418733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_91418141_91418423
ENSMUSG00000100691.2_0	chr8	+	728	1	FSM	ENSMUSG00000100691.2	ENSMUST00000191396.2	1009	1	35	246	35	-246	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCCCAGCGTTTTGGATTT	2360	False	NA	13	True	ATTAAA	-14	NA	71229493	71230221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_71229500_71230200
ENSMUSG00000100755.2_0	chr3	+	493	1	FSM	ENSMUSG00000100755.2	ENSMUST00000116115.3	425	1	-20	-48	-20	48	mono-exon	FALSE	NA	NA	NA	NA	NA	1108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	7644	False	NA	NA	False	AATAAA	-14	NA	37768868	37769361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_37768900_37769400
ENSMUSG00000100801.2_0	chr5	-	2101	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-78	-82	-78	82	mono-exon	FALSE	NA	NA	NA	NA	NA	26110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	2	True	AATAAA	-16	NA	5833633	5831532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_5831500_5833600
ENSMUSG00000100826.7_0	chr7	-	3072	3	FSM	ENSMUSG00000100826.7	ENSMUST00000188976.2	2193	3	-880	1	448	-1	multi-exon	FALSE	canonical	3	77	junction_2	5.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCATAGTTTGTGTTTTT	NA	False	NA	-7	True	ATTAAA	-19	NA	59625059	59619325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_59620292_59621627_59621693_59623018
ENSMUSG00000100826.7_1	chr7	-	4975	5	ISM	ENSMUSG00000100826.7	ENSMUST00000189581.7	6861	12	-1748	32207	-1748	-1	5prime_fragment	FALSE	canonical	3	50	junction_4	15.4008928312614	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCATAGTTTGTGTTTTT	NA	False	NA	-7	True	ATTAAA	-19	NA	59627255	59619325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_59620292_59621627_59621693_59623018_59623399_59623594_59623648_59623744
ENSMUSG00000100826.7_2	chr7	-	4901	4	NIC	ENSMUSG00000100826.7	novel	6861	12	NA	NA	-1729	-3	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	38.6810318143431	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCATAGTTTGTGTTT	NA	False	NA	-9	True	ATTAAA	-17	NA	59627236	59619327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_59620292_59621627_59621693_59623018_59623399_59623744
ENSMUSG00000100826.7_3	chr7	-	562	1	ISM	ENSMUSG00000100826.7	ENSMUST00000188976.2	2193	3	4292	1	3318	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCATAGTTTGTGTTTTT	NA	False	NA	-7	True	ATTAAA	-19	NA	59619887	59619325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_59619300_59619900
ENSMUSG00000100826.7_6	chr7	-	6020	4	ISM	ENSMUSG00000100826.7	ENSMUST00000189581.7	6861	12	-2696	32207	-2696	-1	intron_retention	FALSE	canonical	3	56	junction_3	13.2748718344933	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCATAGTTTGTGTTTTT	NA	False	NA	-7	True	ATTAAA	-19	NA	59628203	59619325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_59620292_59621627_59621693_59623018_59623399_59623594
ENSMUSG00000100826.7_8	chr7	-	3347	4	NIC	ENSMUSG00000100826.7	novel	6861	12	NA	NA	76	-1	intron_retention	FALSE	canonical	3	50	junction_3	15.9652400197707	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCATAGTTTGTGTTTTT	NA	False	NA	-7	True	ATTAAA	-19	NA	59625431	59619325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_59620292_59621627_59621693_59623018_59623648_59623744
ENSMUSG00000100862.2_0	chr1	-	838	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	1	-161	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6986	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATGACCCACCAAACTCA	NA	False	NA	NA	False	NA	NA	NA	24653893	24653055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_24653100_24653900
ENSMUSG00000100863.2_0	chr4	-	1164	1	FSM	ENSMUSG00000100863.2	ENSMUST00000122162.2	1009	1	40	-195	40	195	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGCTAGAAAAAAAAAAAGAA	NA	False	NA	NA	False	AATAAA	-13	NA	91694752	91693588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_91693600_91694800
ENSMUSG00000100908.2_0	chr1	+	1479	4	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-23	9681	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.657891697365	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTAGCTTCGAGTGAC	NA	False	NA	1	True	ATTAAA	-15	NA	88387381	88402961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_88387678_88397558_88397777_88398642_88398830_88402183
ENSMUSG00000100954.5_0	chr1	-	1373	1	FSM	ENSMUSG00000100954.6	ENSMUST00000186597.2	2498	1	-21	1146	-21	-1146	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATGCGTGTTCACTTC	NA	False	NA	NA	False	NA	NA	NA	151221003	151219630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_151219600_151221000
ENSMUSG00000100967.2_3	chr15	-	178	1	ISM	ENSMUSG00000100967.2	ENSMUST00000189185.2	8038	2	2298	7125	2298	-7125	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	84801941	84801763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_84801800_84801900
ENSMUSG00000101009.7_1	chr14	+	597	2	NIC	ENSMUSG00000101009.7	novel	1412	4	NA	NA	388	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACACTATAAACCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	76915481	76924532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_76915820_76924273
ENSMUSG00000101009.7_2	chr14	+	1767	1	FSM	ENSMUSG00000101009.7	ENSMUST00000185809.2	2252	1	477	8	402	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAGAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	76915495	76917262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_76915500_76917300
ENSMUSG00000101013.2_0	chr5	+	1712	1	FSM	ENSMUSG00000101013.2	ENSMUST00000190567.2	5410	1	279	3419	279	-3419	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCATCTGTCCTCATTGT	NA	False	NA	NA	False	NA	NA	NA	21156265	21157977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_21156300_21158000
ENSMUSG00000101111.2_0	chr1	-	782	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	0	1	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1382	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTCCCTTAGTATAATTA	NA	False	NA	NA	False	NA	NA	NA	24653052	24652270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_24652300_24653100
ENSMUSG00000101166.7_0	chr7	+	3612	4	FSM	ENSMUSG00000045411.17	ENSMUST00000107949.8	3610	4	1	-3	1	0	multi-exon	FALSE	canonical	3	709	junction_3	48.6095555306659	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732
ENSMUSG00000101166.7_2	chr7	+	5276	2	ISM	ENSMUSG00000080352.3_ENSMUSG00000045411.17	ENSMUST00000186606.2	748	3	-3177	-681	1	0	intron_retention	FALSE	canonical	3	709	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	17	True	ATTAAA	-17	NA	43896211	43901736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43899484_43899732
ENSMUSG00000101166.7_3	chr7	+	3861	3	ISM	ENSMUSG00000045411.17	ENSMUST00000107949.8	3610	4	1	-3	1	0	intron_retention	FALSE	canonical	3	733	junction_1	44.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896211	43901739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_43897720_43898965_43899024_43899444
ENSMUSG00000101166.7_4	chr7	+	5102	2	FSM	ENSMUSG00000080352.3_ENSMUSG00000045411.17	ENSMUST00000188382.2	2301	2	-2803	2	0	0	multi-exon	FALSE	canonical	3	822	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGGGTGTGCTGTTTG	NA	False	NA	18	True	ATTAAA	-18	NA	43896214	43901737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43899024_43899444
ENSMUSG00000101166.7_6	chr7	+	4856	3	FSM	ENSMUSG00000045411.17	ENSMUST00000071296.11	4201	3	-654	-1	1	0	multi-exon	FALSE	canonical	3	709	junction_2	56.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGGGTGTGCTGTTTG	NA	False	NA	18	True	ATTAAA	-18	NA	43896211	43901737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_43899024_43899444_43899484_43899732
ENSMUSG00000101188.2_0	chr1	+	1431	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-12	-201	-12	201	mono-exon	FALSE	NA	NA	NA	NA	NA	948	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTAGACACCCTTTT	NA	False	NA	33	True	AATAAA	-34	NA	60743078	60744509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_60743100_60744500
ENSMUSG00000101191.7_0	chr6	+	1285	4	FSM	ENSMUSG00000101191.7	ENSMUST00000187542.7	782	4	46	-549	46	549	multi-exon	FALSE	canonical	1	2	junction_1	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGATTCTGATGGCAAA	NA	False	NA	NA	False	AATAAA	-7	NA	125458371	125462190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125458438_125459526_125459666_125460403_125460533_125461239
ENSMUSG00000101225.2_0	chr7	-	1558	1	FSM	ENSMUSG00000101225.2	ENSMUST00000185351.2	2432	1	13	861	13	-861	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAAGGCTGGGTGGTGG	9989	False	NA	NA	False	NA	NA	NA	127112028	127110470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127110500_127112000
ENSMUSG00000101249.2_0	chr1	-	353	1	FSM	ENSMUSG00000101249.2	ENSMUST00000187117.2	492	1	205	-66	205	66	mono-exon	FALSE	NA	NA	NA	NA	NA	325	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAGATATTAGTAAAATC	NA	False	NA	NA	False	NA	NA	NA	24655073	24654720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_24654700_24655100
ENSMUSG00000101320.2_0	chr18	+	1440	2	FSM	ENSMUSG00000101320.2	ENSMUST00000189675.2	670	2	-15	-755	-3	755	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTTTGTTTTGTTTTG	-10	True	NA	NA	False	ATTAAA	-11	NA	6490139	6491879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_6490235_6490534
ENSMUSG00000101320.2_1	chr18	+	1092	1	NIC	ENSMUSG00000101320.2	novel	387	2	NA	NA	0	110	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCATTGGCAAACTCTTA	-7	True	NA	NA	False	AATAAA	-11	NA	6490142	6491234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_6490100_6491200
ENSMUSG00000101335.2_0	chr9	-	1646	1	FSM	ENSMUSG00000101335.2	ENSMUST00000188747.2	2153	1	502	5	502	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATGGGCATACTACT	NA	False	NA	NA	False	NA	NA	NA	88325203	88323557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_88323600_88325200
ENSMUSG00000101355.2_0	chr13	+	484	1	FSM	ENSMUSG00000101355.2	ENSMUST00000188775.2	411	1	-32	-41	-32	41	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAAACCTACACAAAGGT	4604	False	NA	NA	False	NA	NA	NA	21901796	21902280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_21901800_21902300
ENSMUSG00000101431.2_0	chr8	-	1380	1	FSM	ENSMUSG00000101431.2	ENSMUST00000120430.2	1597	1	355	-138	355	138	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATTCAGGT	NA	False	NA	NA	False	AGTAAA	-14	NA	76439469	76438089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_76438100_76439500
ENSMUSG00000101523.3_0	chr1	+	2650	1	FSM	ENSMUSG00000101523.3	ENSMUST00000190422.3	2633	1	-2	-15	-2	15	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	156351579	156354229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_156351600_156354200
ENSMUSG00000101549.2_2	chr1	-	2265	4	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1954	23198	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	47.932823363073	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGACTATACATAAGTTCT	NA	False	NA	-9	True	NA	NA	NA	132206195	132179255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_132181184_132202453_132202560_132202761_132202875_132206077
ENSMUSG00000101549.2_3	chr1	-	493	4	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1956	6207	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_1	10.077477638554	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAACCCTTCTTAATTTC	NA	False	NA	-1	True	AATAAA	-17	NA	132206193	132196246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_132196405_132202453_132202560_132202761_132202875_132206077
ENSMUSG00000101549.2_5	chr1	-	589	5	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1956	6205	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	39.6169155790806	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATAACCCTTCTTAATT	NA	False	NA	-3	True	AATAAA	-15	NA	132206193	132196248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_132196405_132196619_132196718_132202453_132202560_132202761_132202875_132206077
ENSMUSG00000101599.2_0	chr1	+	4214	1	FSM	ENSMUSG00000101599.2	ENSMUST00000185480.2	9720	1	713	4793	713	-4793	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTCACGAACCATCTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	63156989	63161203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_63157000_63161200
ENSMUSG00000101609.3_0	chr7	-	4652	1	FSM	ENSMUSG00000101609.3	ENSMUST00000185789.3	93092	1	64912	23528	64912	-23528	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	142785374	142780722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_142780700_142785400
ENSMUSG00000101609.3_1	chr7	-	2002	1	FSM	ENSMUSG00000101609.3	ENSMUST00000185789.3	93092	1	53891	37199	53891	-37199	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCCAAAAGAAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	142796395	142794393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_142794400_142796400
ENSMUSG00000101609.3_2	chr7	-	2538	1	FSM	ENSMUSG00000101609.3	ENSMUST00000185789.3	93092	1	39862	50692	39862	-50692	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTATATGTATTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	142810424	142807886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_142807900_142810400
ENSMUSG00000101609.3_3	chr7	-	2896	1	FSM	ENSMUSG00000101609.3	ENSMUST00000185789.3	93092	1	36330	53866	36330	-53866	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACAGAGTCTCTAATAC	NA	False	NA	NA	False	NA	NA	NA	142813956	142811060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_142811100_142814000
ENSMUSG00000101609.3_4	chr7	-	2071	1	FSM	ENSMUSG00000101609.3	ENSMUST00000185789.3	93092	1	17408	73613	17408	-73613	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	73	True	NA	NA	NA	142832878	142830807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_142830800_142832900
ENSMUSG00000101609.3_5	chr7	-	3152	1	FSM	ENSMUSG00000101609.3	ENSMUST00000185789.3	93092	1	12212	77728	12212	-77728	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	142838074	142834922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_142834900_142838100
ENSMUSG00000101645.2_1	chr2	-	3665	13	ISM	ENSMUSG00000034101.15	ENSMUST00000036811.13	5126	19	32777	2	-4125	-2	3prime_fragment	FALSE	canonical	3	106	junction_2	47.7606154576016	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84447047	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823
ENSMUSG00000101645.2_11	chr2	-	4550	16	ISM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	29887	0	-8300	0	3prime_fragment	FALSE	canonical	3	171	junction_3	35.6491545793476	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	-38	True	AATAAA	-16	NA	84451222	84431126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178
ENSMUSG00000101645.2_12	chr2	-	4289	15	ISM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	30526	2	-7661	-2	3prime_fragment	FALSE	canonical	3	171	junction_3	36.8987168628185	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84450583	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262
ENSMUSG00000101645.2_15	chr2	-	4137	14	ISM	ENSMUSG00000034101.15	ENSMUST00000036811.13	5126	19	29331	1	-7571	-1	3prime_fragment	FALSE	canonical	3	106	junction_2	46.0626021150506	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGGGAGGTCTGTGTC	NA	False	NA	-39	True	AATAAA	-15	NA	84450493	84431127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262
ENSMUSG00000101645.2_17	chr2	-	2905	8	ISM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	39932	1	-1136	-1	3prime_fragment	FALSE	canonical	3	171	junction_3	41.5338563642939	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGGGAGGTCTGTGTC	1989	False	NA	-39	True	AATAAA	-15	NA	84441177	84431127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106
ENSMUSG00000101645.2_2	chr2	-	4247	14	ISM	ENSMUSG00000034101.15	ENSMUST00000111692.8	6170	19	30530	712	-7637	-2	3prime_fragment	FALSE	canonical	3	59	junction_9	57.4716807031101	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84450559	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262
ENSMUSG00000101645.2_21	chr2	-	4897	18	ISM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	26328	2	-11859	-2	3prime_fragment	FALSE	canonical	3	171	junction_3	35.2434931048041	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84454781	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613
ENSMUSG00000101645.2_24	chr2	-	2354	4	ISM	ENSMUSG00000034101.15	ENSMUST00000036811.13	5126	19	40478	2	675	-2	3prime_fragment	FALSE	canonical	3	106	junction_2	79.0667790892961	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	3820	False	NA	-40	True	AATAAA	-14	NA	84439346	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303
ENSMUSG00000101645.2_25	chr2	-	3733	14	ISM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	34058	1	-4129	-1	3prime_fragment	FALSE	canonical	3	171	junction_3	38.0981292929364	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGGGAGGTCTGTGTC	NA	False	NA	-39	True	AATAAA	-15	NA	84447051	84431127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823
ENSMUSG00000101645.2_3	chr2	-	4150	13	ISM	ENSMUSG00000034101.15	ENSMUST00000066177.10	5044	17	30329	2	-7603	-2	3prime_fragment	FALSE	canonical	3	59	junction_8	65.4049352538136	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	NA	False	NA	-40	True	AATAAA	-14	NA	84450525	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262
ENSMUSG00000101645.2_31	chr2	-	2440	5	ISM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	41737	5	649	-5	3prime_fragment	FALSE	canonical	3	171	junction_3	51.1486803348825	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGGGAGGTCTG	3794	False	NA	-43	True	AATAAA	-11	NA	84439372	84431131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303
ENSMUSG00000101645.2_44	chr2	-	4714	17	ISM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	28699	1	-9488	-1	3prime_fragment	FALSE	canonical	3	171	junction_3	34.9919633630352	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGGGAGGTCTGTGTC	NA	False	NA	-39	True	AATAAA	-15	NA	84452410	84431127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354
ENSMUSG00000101645.2_6	chr2	-	2750	7	ISM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	40192	0	-876	0	3prime_fragment	FALSE	canonical	3	171	junction_3	43.4539986652552	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	2249	False	NA	-38	True	AATAAA	-16	NA	84440917	84431126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851
ENSMUSG00000101645.2_8	chr2	-	2173	2	ISM	ENSMUSG00000034101.15	ENSMUST00000036811.13	5126	19	45778	2	5975	-2	3prime_fragment	FALSE	canonical	3	282	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGGAGGTCTGTGT	9120	False	NA	-40	True	AATAAA	-14	NA	84434046	84431128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr2_-_84433248_84433992
ENSMUSG00000101655.2_0	chr6	-	447	2	NIC	ENSMUSG00000101655.2	novel	775	2	NA	NA	286	-1	combination_of_known_splicesites	FALSE	canonical	2	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGGTGAAATTTTTTTTT	7305	False	NA	NA	False	AATAAA	-18	NA	86464900	86460358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_86460682_86464776
ENSMUSG00000101655.2_1	chr6	-	486	2	FSM	ENSMUSG00000101655.2	ENSMUST00000189386.2	775	2	286	3	263	-3	multi-exon	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGGGTGAAATTTTTTT	7282	False	NA	NA	False	AATAAA	-16	NA	86464923	86460360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_86460700_86464776
ENSMUSG00000101660.2_0	chr1	+	1151	5	Fusion	ENSMUSG00000073609.10_ENSMUSG00000101660.2	novel	3232	10	NA	NA	5575	357	multi-exon	FALSE	canonical	0	0	junction_2	21.2647007973308	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGCGAGGCTGCCACCAG	7910	False	NA	NA	False	NA	NA	NA	93763093	93844847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr1_+_93763178_93765661_93765806_93838938_93839082_93841769_93841936_93844233
ENSMUSG00000101678.4_1	chr5	-	4431	27	Fusion	ENSMUSG00000106864.4_ENSMUSG00000107283.4	novel	2328	9	NA	NA	0	-6	multi-exon	TRUE	canonical	2	5	junction_8	179.462762533331	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATCAAACAAGAATTGTG	NA	False	NA	NA	False	NA	NA	NA	31337253	31298012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534_31311635_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575_31331840_31337227
ENSMUSG00000101678.4_12	chr5	-	2001	14	ISM	ENSMUSG00000106864.4	ENSMUST00000202254.4	4718	18	224	3769	1	-279	5prime_fragment	FALSE	canonical	3	356	junction_13	93.0300581316401	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGAGTACAGAGCTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	31337252	31317117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
ENSMUSG00000101678.4_13	chr5	-	2781	12	ISM	ENSMUSG00000106864.4	ENSMUST00000202254.4	4718	18	223	8869	0	2257	5prime_fragment	FALSE	canonical	3	356	junction_11	96.3072733966179	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACAGAAGTTACTATCAA	NA	False	NA	NA	False	NA	NA	NA	31337253	31322217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
ENSMUSG00000101678.4_15	chr5	-	2172	10	ISM	ENSMUSG00000106864.4	ENSMUST00000202254.4	4718	18	225	11130	2	-4	5prime_fragment	FALSE	canonical	3	356	junction_9	91.6878763341515	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTGAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31337251	31324478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
ENSMUSG00000101678.4_17	chr5	-	4301	26	Fusion	ENSMUSG00000106864.4_ENSMUSG00000107283.4	novel	2328	9	NA	NA	1	-6	multi-exon	FALSE	canonical	2	5	junction_8	162.264406448241	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATCAAACAAGAATTGTG	NA	False	NA	NA	False	NA	NA	NA	31337252	31298012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534_31311635_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
ENSMUSG00000101678.4_18	chr5	-	4265	25	Fusion	ENSMUSG00000106864.4_ENSMUSG00000107283.4	novel	2328	9	NA	NA	5	-18	multi-exon	FALSE	canonical	2	5	junction_8	162.819637559479	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCTTTTTTTAAAATCAA	NA	False	NA	NA	False	NA	NA	NA	31331840	31298024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534_31311635_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575
ENSMUSG00000101678.4_25	chr5	-	3528	18	ISM	ENSMUSG00000101678.4	ENSMUST00000101411.6	3223	21	-38	6067	-38	-6067	5prime_fragment	FALSE	canonical	3	356	junction_17	84.7556634765458	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTGAGTGGGTGTTTGG	NA	False	NA	-1	True	AGTAAA	-23	NA	31337293	31314552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
ENSMUSG00000101678.4_7	chr5	-	3326	18	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.979707388106	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAAAGTATTTAGAACCC	NA	False	NA	59	True	ATTAAA	-17	NA	31337253	31313871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_31314745_31315679_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
ENSMUSG00000101731.2_0	chr1	-	2031	1	ISM	ENSMUSG00000101731.2	ENSMUST00000188909.2	2414	4	4569	86	3649	-86	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTGTTTGTGCATATGC	NA	False	NA	NA	False	NA	NA	NA	119459326	119457295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_119457300_119459300
ENSMUSG00000101795.3_0	chr1	-	1290	1	FSM	ENSMUSG00000101795.3	ENSMUST00000185806.3	1270	1	20	-40	20	40	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCATATTTCAATAAATCA	NA	False	NA	NA	False	ATTAAA	-31	NA	143022334	143021044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_143021000_143022300
ENSMUSG00000101841.2_0	chr11	-	1058	1	FSM	ENSMUSG00000101841.2	ENSMUST00000121861.2	820	1	51	-289	51	289	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGCAATAAAGAGCACAACAT	NA	False	NA	NA	False	TTTAAA	-14	NA	9100546	9099488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_9099500_9100500
ENSMUSG00000101849.2_0	chr1	+	1847	1	FSM	ENSMUSG00000101849.2	ENSMUST00000189147.2	1849	1	2	0	2	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAAGTCTCGATTCTTT	NA	False	NA	NA	False	ATTAAA	-23	NA	77491918	77493765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_77491900_77493800
ENSMUSG00000101856.2_0	chr5	+	806	1	FSM	ENSMUSG00000101856.2	ENSMUST00000188465.2	1454	1	-52	700	-52	-700	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGCCTGTATAGCCTT	NA	False	NA	NA	False	TATAAA	-13	NA	25734958	25735764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_25735000_25735800
ENSMUSG00000101892.2_0	chr15	-	1317	6	FSM	ENSMUSG00000101892.2	ENSMUST00000100655.5	1341	6	5	19	5	-8	multi-exon	FALSE	canonical	3	653	junction_4	117.266534015464	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAAACTCTCTCCCAGG	NA	False	NA	-28	True	AATAAA	-21	NA	57897706	57885673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895379_57895476_57897479
ENSMUSG00000101892.2_4	chr15	-	491	3	ISM	ENSMUSG00000101892.2	ENSMUST00000100655.5	1341	6	5630	19	-790	-8	3prime_fragment	FALSE	canonical	3	846	junction_2	60	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAAACTCTCTCCCAGG	339	False	NA	-28	True	AATAAA	-21	NA	57892081	57885673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_57885960_57888669_57888803_57892009
ENSMUSG00000101939.2_0	chr1	-	341	1	FSM	ENSMUSG00000101939.2	ENSMUST00000188299.2	345	1	0	4	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTAAATGGTAATTAGTT	NA	False	NA	NA	False	AAAAAG	-14	NA	24652200	24651859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_24651900_24652200
ENSMUSG00000101959.2_0	chr17	-	1395	1	FSM	ENSMUSG00000101959.2	ENSMUST00000189788.2	1445	1	46	4	46	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGTACTGGTTTTTGCCT	NA	False	NA	NA	False	ATTAAA	-16	NA	5468996	5467601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_5467600_5469000
ENSMUSG00000101970.9_0	chr7	-	1028	5	FSM	ENSMUSG00000101970.9	ENSMUST00000184587.5	5140	5	-128	4240	-128	1	multi-exon	FALSE	canonical	3	140	junction_4	46.3384289763906	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTCTCAGTTTGGGC	NA	False	NA	-11	True	AATAAA	-14	NA	73208271	73193788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207786
ENSMUSG00000101970.9_1	chr7	-	1769	2	ISM	ENSMUSG00000101970.9	ENSMUST00000183916.8	432	5	4896	-201	-4159	0	3prime_fragment	FALSE	canonical	3	269	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAATTTCTCAGTTTGGG	NA	False	NA	-12	True	AATAAA	-13	NA	73200772	73193789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_73194131_73199344
ENSMUSG00000101970.9_2	chr7	-	6635	4	NIC	ENSMUSG00000101970.9	novel	5140	5	NA	NA	-133	1	intron_retention	FALSE	canonical	3	140	junction_3	53.0471488394994	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTCTCAGTTTGGGC	NA	False	NA	-11	True	AATAAA	-14	NA	73208276	73193788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_73194131_73199344_73205082_73205602_73205669_73207786
ENSMUSG00000101970.9_3	chr7	-	722	5	FSM	ENSMUSG00000101970.9	ENSMUST00000187421.7	519	5	20	-223	20	1	multi-exon	FALSE	canonical	3	58	junction_4	79.8780320238299	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTCTCAGTTTGGGC	NA	False	NA	-11	True	AATAAA	-14	NA	73207701	73193788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207522
ENSMUSG00000101970.9_4	chr7	-	1683	1	FSM	ENSMUSG00000101970.9	ENSMUST00000189960.2	2824	1	1142	-1	1142	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTCTCAGTTTGGGC	NA	False	NA	-11	True	AATAAA	-14	NA	73195471	73193788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_73193800_73195500
ENSMUSG00000101970.9_8	chr7	-	3145	4	ISM	ENSMUSG00000101970.9	ENSMUST00000187421.7	519	5	-549	-223	-127	1	intron_retention	FALSE	canonical	3	218	junction_3	22.9540604009158	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTCTCAGTTTGGGC	NA	False	NA	-11	True	AATAAA	-14	NA	73208270	73193788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602
ENSMUSG00000102070.2_0	chr1	-	683	1	FSM	ENSMUSG00000102070.2	ENSMUST00000188231.2	681	1	0	-2	0	2	mono-exon	FALSE	NA	NA	NA	NA	NA	786	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCACTATGAAGCTAAGA	NA	False	NA	NA	False	ACTAAA	-34	NA	24654646	24653963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_24654000_24654600
ENSMUSG00000102101.2_0	chr16	-	2347	1	FSM	ENSMUSG00000102101.2	ENSMUST00000186480.2	1350	1	963	-1960	963	1960	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAAAAG	4938	False	NA	NA	False	NA	NA	NA	55794017	55791670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_55791700_55794000
ENSMUSG00000102189.2_0	chr14	+	1648	1	FSM	ENSMUSG00000102189.2	ENSMUST00000193092.2	3031	1	158	1225	158	-1225	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	50298974	50300622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_50299000_50300600
ENSMUSG00000102222.2_0	chr18	+	2251	4	FSM	ENSMUSG00000102222.2	ENSMUST00000193404.2	4732	4	2478	3	2478	-3	multi-exon	FALSE	canonical	0	0	junction_1	104.703815063678	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTGACCGCGTCTGTT	7975	False	NA	14	True	AATAAA	-17	NA	37882523	37974923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37882659_37958073_37958133_37966317_37966407_37972955
ENSMUSG00000102252.6_2	chr7	-	1309	10	FSM	ENSMUSG00000102252.6	ENSMUST00000059305.17	1932	10	1	622	1	-615	multi-exon	FALSE	canonical	3	1774	junction_5	121.666210044805	1132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATTGGGGTTTTTCTTTGT	NA	False	NA	-12	True	AATAAA	-15	NA	59654858	59632864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
ENSMUSG00000102278.2_1	chr1	-	121	1	FSM	ENSMUSG00000102278.2	ENSMUST00000193540.2	2756	1	2665	-30	2665	30	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATGACCTTTGTCTCA	4576	False	NA	NA	False	ATTAAA	-44	NA	172215891	172215770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_172215800_172215900
ENSMUSG00000102330.2_0	chr9	+	176	1	FSM	ENSMUSG00000102330.2	ENSMUST00000193259.2	1441	1	397	868	397	-868	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATGTATTTTAATAT	NA	False	NA	NA	False	NA	NA	NA	72796723	72796899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72796700_72796900
ENSMUSG00000102353.2_0	chr19	-	1759	1	FSM	ENSMUSG00000102353.2	ENSMUST00000192635.2	1748	1	0	-11	0	11	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTCCATTGAACTCAAGT	NA	False	NA	NA	False	AGTAAA	-13	NA	37423104	37421345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_37421300_37423100
ENSMUSG00000102411.2_0	chr9	+	170	1	FSM	ENSMUSG00000102411.2	ENSMUST00000194508.2	2749	1	1408	1171	1408	-1171	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	72636829	72636999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72636800_72637000
ENSMUSG00000102422.2_0	chr3	+	1286	6	ISM	ENSMUSG00000027777.16	ENSMUST00000182997.3	1557	7	11990	6	-6	-5	3prime_fragment	FALSE	canonical	3	459	junction_2	12.6964561984831	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGATACGTCCTTTTGCT	7380	False	NA	16	True	AATAAA	-18	NA	68503501	68533791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUSG00000102422.2_1	chr3	+	1139	5	ISM	ENSMUSG00000027777.16	ENSMUST00000182997.3	1557	7	32308	6	20312	-5	3prime_fragment	FALSE	canonical	3	459	junction_1	10.0124921972504	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGATACGTCCTTTTGCT	NA	False	NA	16	True	AATAAA	-18	NA	68523819	68533791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUSG00000102422.2_2	chr3	+	672	2	ISM	ENSMUSG00000027777.16	ENSMUST00000182997.3	1557	7	36868	6	24872	-5	3prime_fragment	FALSE	canonical	3	484	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGATACGTCCTTTTGCT	NA	False	NA	16	True	AATAAA	-18	NA	68528379	68533791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_68528400_68533139
ENSMUSG00000102422.2_3	chr3	+	464	1	ISM	ENSMUSG00000102422.2	ENSMUST00000182006.4	2369	11	733765	6	733765	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATACGTCCTTTTGCTCA	NA	False	NA	18	True	AATAAA	-20	NA	68533329	68533793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_68533300_68533800
ENSMUSG00000102428.2_0	chr18	+	2290	4	FSM	ENSMUSG00000102428.2	ENSMUST00000044851.8	5080	4	2787	3	2594	-3	multi-exon	FALSE	canonical	3	109	junction_1	53.597263611743	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTGACCGCGTCTGTT	NA	False	NA	14	True	AATAAA	-17	NA	37901419	37974923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37901594_37958073_37958133_37966317_37966407_37972955
ENSMUSG00000102428.2_1	chr18	+	1731	1	FSM	ENSMUSG00000102428.2	ENSMUST00000193045.2	4352	1	2572	49	2572	-49	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37901397	37903128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37901400_37903100
ENSMUSG00000102543.6_0	chr18	+	4431	4	FSM	ENSMUSG00000102543.6	ENSMUST00000055935.11	4741	4	307	3	166	-3	multi-exon	FALSE	canonical	0	0	junction_1	104.703815063678	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTGACCGCGTCTGTT	NA	False	NA	14	True	AATAAA	-17	NA	37952872	37974923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37955188_37958073_37958133_37966317_37966407_37972955
ENSMUSG00000102644.6_0	chr5	+	3482	4	FSM	ENSMUSG00000102644.6	ENSMUST00000192174.6	1996	4	-10	-1476	4	-5	multi-exon	TRUE	canonical	3	9	junction_1	7.48331477354788	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAATGTGTTGTGGGTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	92110752	92119920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_92111382_92112954_92113164_92114310_92114434_92117399
ENSMUSG00000102644.6_1	chr5	+	2931	4	NNC	ENSMUSG00000102644.6	novel	1996	4	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	5.24933858267454	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAATGTGTTGTGGGTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	92110756	92119920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_92110835_92112954_92113164_92114310_92114434_92117399
ENSMUSG00000102644.6_4	chr5	+	3573	5	FSM	ENSMUSG00000102644.6	ENSMUST00000191860.2	3151	5	-431	9	-2	-9	multi-exon	FALSE	canonical	2	3	junction_1	9.73075022801428	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTAATAATGTGTTGTGGG	NA	False	NA	NA	False	AATAAA	-7	NA	92110760	92119916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_92111382_92111541_92111645_92112954_92113164_92114310_92114434_92117399
ENSMUSG00000102644.6_8	chr5	+	2266	2	ISM	ENSMUSG00000102644.6	ENSMUST00000192174.6	1996	4	2940	-490	2511	490	3prime_fragment	FALSE	canonical	3	15	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGCCTGTCATTTC	671	False	NA	NA	False	NA	NA	NA	92113702	92118934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_92114434_92117399
ENSMUSG00000102644.6_9	chr5	+	1695	1	ISM	ENSMUSG00000102644.6	ENSMUST00000191860.2	3151	5	7034	5	7034	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAATGTGTTGTGGGTTTT	5194	False	NA	NA	False	AATAAA	-11	NA	92118225	92119920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_92118200_92119900
ENSMUSG00000102719.2_0	chr1	+	196	1	FSM	ENSMUSG00000102719.2	ENSMUST00000194726.2	3841	1	3098	547	3098	-547	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTGATGGAGTTAGGAA	8431	False	NA	NA	False	NA	NA	NA	58840039	58840235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_58840000_58840200
ENSMUSG00000102742.2_0	chr18	+	4719	4	FSM	ENSMUSG00000102742.2	ENSMUST00000061279.10	4756	4	34	3	34	-3	multi-exon	FALSE	canonical	1	6	junction_1	101.88337559299	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTGACCGCGTCTGTT	NA	False	NA	14	True	AATAAA	-17	NA	37888817	37974923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37891421_37958073_37958133_37966317_37966407_37972955
ENSMUSG00000102748.2_0	chr18	+	1985	1	FSM	ENSMUSG00000102748.2	ENSMUST00000193631.2	2756	1	770	1	770	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCGATGCTTGTTTTTCTT	2122	False	NA	NA	False	ATTAAA	-13	NA	37823657	37825642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37823700_37825600
ENSMUSG00000102752.2_0	chr1	-	1994	1	Genic_Genomic	ENSMUSG00000102752.2	novel	NA	NA	NA	NA	6144	4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGCTTGTCTTTTTTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	170127757	170125763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_-_170125800_170127800
ENSMUSG00000102813.2_2	chr4	+	3252	1	FSM	ENSMUSG00000102813.2	ENSMUST00000194216.2	2459	1	1	-794	1	794	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGCAAAAATGAGTATCA	4086	False	NA	-3	True	AATAAA	-10	NA	150152996	150156248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_+_150153000_150156200
ENSMUSG00000102824.2_0	chr1	-	517	1	FSM	ENSMUSG00000102824.2	ENSMUST00000191699.2	381	1	-20	-116	-20	116	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	AATAAA	-15	NA	189010040	189009523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_189009500_189010000
ENSMUSG00000102840.2_0	chr1	-	1575	1	FSM	ENSMUSG00000102840.2	ENSMUST00000192600.2	1624	1	46	3	46	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTAGTATAAGCTAATT	NA	False	NA	NA	False	NA	NA	NA	191554059	191552484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191552500_191554100
ENSMUSG00000102869.3_0	chr2	-	3140	1	FSM	ENSMUSG00000102869.3	ENSMUST00000192863.3	4915	1	1772	3	1622	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	281	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGGGCGTCTCTAC	NA	False	NA	NA	False	AATAAA	-14	NA	156233127	156229987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_156230000_156233100
ENSMUSG00000102918.2_0	chr18	+	4688	4	FSM	ENSMUSG00000102918.2	ENSMUST00000076807.7	4687	4	-5	4	-5	-4	multi-exon	FALSE	canonical	3	36	junction_1	87.788888185743	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTGTGACCGCGTCTGT	NA	False	NA	13	True	AATAAA	-16	NA	37939457	37974922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37942031_37958073_37958133_37966317_37966407_37972955
ENSMUSG00000102976.7_0	chr1	-	4437	18	FSM	ENSMUSG00000102976.7	ENSMUST00000191896.6	4396	18	-55	14	-5	-14	multi-exon	FALSE	canonical	3	129	junction_16	96.2094744595279	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGAAATCCTTAGTTCTT	NA	False	NA	-13	True	AATAAA	-7	NA	133589111	133547613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588974
ENSMUSG00000102976.7_1	chr1	-	5751	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	7	-3	intron_retention	FALSE	canonical	3	133	junction_16	79.3516697996961	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAATCCTTAGTTCTTAT	NA	False	NA	-11	True	AATAAA	-9	NA	133589111	133547611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133583137_133588974
ENSMUSG00000102976.7_14	chr1	-	5730	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	7	-5	intron_retention	FALSE	canonical	3	78	junction_16	90.1805264109165	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGAAATCCTTAGTTCTT	NA	False	NA	-13	True	AATAAA	-7	NA	133589111	133547613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133583137_133588993
ENSMUSG00000102976.7_16	chr1	-	4787	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	10	-4	combination_of_known_splicesites	FALSE	canonical	3	13	junction_16	103.726503363412	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGAAATCCTTAGTTCTTA	NA	False	NA	-12	True	AATAAA	-8	NA	133589108	133547612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133582177_133588974
ENSMUSG00000102976.7_2	chr1	-	4420	18	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	-5	-12	combination_of_known_junctions	FALSE	canonical	3	78	junction_17	104.361959952471	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAATCCTTAGTTCTTAT	NA	False	NA	-11	True	AATAAA	-9	NA	133589111	133547611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588993
ENSMUSG00000102976.7_24	chr1	-	4838	18	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	-2	-16	combination_of_known_junctions	FALSE	canonical	3	41	junction_16	109.88493510003	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAGGAAATCCTTAGTTC	NA	False	NA	-15	True	AATAAA	-5	NA	133589108	133547615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133582177_133583082_133583137_133588974
ENSMUSG00000102976.7_9	chr1	-	4361	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	10	-5	combination_of_known_splicesites	FALSE	canonical	3	25	junction_16	101.178060863015	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGAAATCCTTAGTTCTT	NA	False	NA	-13	True	AATAAA	-7	NA	133589108	133547613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588993
ENSMUSG00000103009.2_0	chr2	-	1959	1	FSM	ENSMUSG00000103009.2	ENSMUST00000192413.2	1943	1	-20	4	-20	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAATTATTTGTGAGGAA	NA	False	NA	NA	False	ATTAAA	-11	NA	129041134	129039175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_129039200_129041100
ENSMUSG00000103034.2_0	chr3	+	119	1	FSM	ENSMUSG00000103034.2	ENSMUST00000192045.2	490	1	355	16	355	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGCATAAAAAAAAAATGGG	NA	False	NA	NA	False	AATAAA	-17	NA	5816220	5816339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_5816200_5816300
ENSMUSG00000103041.2_0	chr3	+	1648	1	FSM	ENSMUSG00000103041.2	ENSMUST00000195714.2	4279	1	-346	2977	-346	-2977	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTGGCTGAGAGCTGTGG	NA	False	NA	NA	False	NA	NA	NA	65864832	65866480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_65864800_65866500
ENSMUSG00000103081.4_0	chr18	+	4695	4	FSM	ENSMUSG00000103081.4	ENSMUST00000195764.2	4615	4	-80	0	-80	0	multi-exon	FALSE	canonical	3	10	junction_1	100.00333327778	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTGACCGCGTCTGTT	3862	False	NA	14	True	AATAAA	-17	NA	37894773	37974923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37897353_37958073_37958133_37966317_37966407_37972955
ENSMUSG00000103144.2_1	chr18	+	4559	1	FSM	ENSMUSG00000103144.2	ENSMUST00000194888.2	3247	1	-16	-1296	-16	1296	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTTAGCTCTTATAA	NA	False	NA	NA	False	AATAAA	-15	NA	37794829	37799388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37794800_37799400
ENSMUSG00000103149.2_0	chr16	+	925	1	FSM	ENSMUSG00000103149.2	ENSMUST00000193194.2	1166	1	30	211	30	-211	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGAGACTGTTTTCTGA	NA	False	NA	NA	False	ATTAAA	-32	NA	17739936	17740861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17739900_17740900
ENSMUSG00000103156.2_0	chr1	-	1479	2	FSM	ENSMUSG00000103156.2	ENSMUST00000193209.2	600	2	53	-932	53	932	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTTGGTTATAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	180596168	180590129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_180591486_180596045
ENSMUSG00000103273.2_0	chr3	+	175	1	FSM	ENSMUSG00000103273.2	ENSMUST00000192925.2	2544	1	1831	538	1831	-538	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAGAAACTGGGG	NA	False	NA	NA	False	NA	NA	NA	93215605	93215780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_93215600_93215800
ENSMUSG00000103332.2_0	chr18	+	2943	1	Genic_Genomic	ENSMUSG00000103332.2	novel	NA	NA	NA	NA	-2	-169977	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATCAGTGGTGGTGTGCC	NA	False	NA	NA	False	AATATA	-16	NA	37802003	37804946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_+_37802000_37804900
ENSMUSG00000103398.2_0	chr13	+	199	1	FSM	ENSMUSG00000103398.2	ENSMUST00000195630.2	1840	1	1640	1	1640	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTAGATATGTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	67601416	67601615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_67601400_67601600
ENSMUSG00000103436.2_4	chrX	-	3630	13	NIC	ENSMUSG00000103436.2	novel	5727	17	NA	NA	8357	-19	combination_of_known_splicesites	TRUE	canonical	1	3	junction_3	100.217645097502	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACTCTTGGCATAGCA	NA	False	NA	NA	False	AAGAAA	-27	NA	7463263	7424859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_7427123_7430100_7430181_7430474_7430528_7460264_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969
ENSMUSG00000103567.2_11	chr18	+	1650	1	ISM	ENSMUSG00000103144.2	ENSMUST00000194190.2	4692	4	178427	4	178427	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTGTGACCGCGTCTGT	NA	False	NA	13	True	AATAAA	-16	NA	37973272	37974922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_37973300_37974900
ENSMUSG00000103567.2_3	chr18	+	2293	4	NNC	ENSMUSG00000102918.2	novel	4687	4	NA	NA	-9	-3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	99.533355659743	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTGACCGCGTCTGTT	NA	False	NA	14	True	AATAAA	-17	NA	37939453	37974923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_37939631_37958073_37958133_37966317_37966407_37972955
ENSMUSG00000103567.2_9	chr18	+	2098	3	FSM	ENSMUSG00000102543.6	ENSMUST00000192875.2	5777	3	5385	-1706	5385	-3	multi-exon	FALSE	canonical	3	212	junction_1	9.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTGACCGCGTCTGTT	2402	False	NA	14	True	AATAAA	-17	NA	37958091	37974923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37958133_37966317_37966407_37972955
ENSMUSG00000103653.2_0	chr1	-	753	1	FSM	ENSMUSG00000103653.2	ENSMUST00000195526.2	631	1	-58	-64	-58	64	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	191758808	191758055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_191758100_191758800
ENSMUSG00000103677.2_0	chr18	+	2647	1	NIC	ENSMUSG00000103677.2	novel	4727	4	NA	NA	28	105	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGTTGTATGTGTGTTG	2835	False	NA	NA	False	ATTAAA	-28	NA	37818290	37820937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_37818300_37820900
ENSMUSG00000103708.2_0	chr1	-	1989	3	NNC	ENSMUSG00000103708.2	novel	654	3	NA	NA	5417	1273	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	3	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCATCTAGGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	36044654	36040792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_-_36042488_36042894_36043073_36044538
ENSMUSG00000103708.2_2	chr1	-	2090	3	FSM	ENSMUSG00000103708.2	ENSMUST00000193725.2	654	3	-162	-1274	-162	1274	multi-exon	FALSE	canonical	1	1	junction_2	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCATCTAGGTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	36050287	36040791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_36042488_36042894_36043073_36050071
ENSMUSG00000103711.2_0	chr1	+	1277	2	FSM	ENSMUSG00000103711.2_ENSMUSG00000026641.14	ENSMUST00000194029.2	543	2	-736	2	-50	-2	multi-exon	FALSE	canonical	3	27	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGAGTTGTATTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	171246550	171247917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_171247669_171247758
ENSMUSG00000103715.2_0	chr9	+	1461	1	FSM	ENSMUSG00000103715.2	ENSMUST00000195799.2	1352	1	-114	5	-114	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCACATCTTTTATCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	85631016	85632477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_85631000_85632500
ENSMUSG00000103749.2_0	chr18	+	8833	1	FSM	ENSMUSG00000103749.2	ENSMUST00000193006.2	4569	1	-5334	1070	-5289	-1070	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCATTTGTTCTGGTTC	NA	False	NA	NA	False	NA	NA	NA	37858772	37867605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37858800_37867600
ENSMUSG00000103753.2_0	chr17	+	3621	1	FSM	ENSMUSG00000103753.2	ENSMUST00000194780.2	1905	1	-26	-1690	-26	1690	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	52139820	52143441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_52139800_52143400
ENSMUSG00000103766.6_1	chr3	-	1270	8	ISM	ENSMUSG00000104445.2	ENSMUST00000171887.4	1937	10	6860	251	6860	-251	3prime_fragment	TRUE	canonical	2	4	junction_4	1.39970842444753	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTGTGTGCGCCTCTCC	6158	False	NA	NA	False	GATAAA	-23	NA	88155156	88150431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88150756_88150899_88150974_88151831_88151954_88152439_88152574_88152742_88152881_88153121_88153289_88154738_88154887_88154993
ENSMUSG00000103857.2_0	chr9	+	4400	1	FSM	ENSMUSG00000103857.2	ENSMUST00000195185.2	2869	1	-1538	7	-1538	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCTACAAGTCAGAGTG	4467	False	NA	NA	False	AATAAA	-7	NA	99188097	99192497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_99188100_99192500
ENSMUSG00000103898.2_0	chr12	-	2604	1	FSM	ENSMUSG00000103898.2	ENSMUST00000195528.2	2603	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGTTTTGTCATGGTG	8094	False	NA	NA	False	NA	NA	NA	112660023	112657419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_112657400_112660000
ENSMUSG00000103901.2_0	chr2	+	2387	1	FSM	ENSMUSG00000103901.2	ENSMUST00000194683.2	3478	1	1088	3	1088	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGAACGTGAGGGCCAT	NA	False	NA	NA	False	AATAAA	-20	NA	14155718	14158105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_14155700_14158100
ENSMUSG00000103906.2_0	chr15	+	2415	1	FSM	ENSMUSG00000103906.2	ENSMUST00000192937.2	4801	1	-1	2387	-1	-2387	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATGCTCTTCCTGGGGA	NA	False	NA	NA	False	ATTAAA	-10	NA	75781582	75783997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_75781600_75784000
ENSMUSG00000103976.2_0	chr1	-	121	1	FSM	ENSMUSG00000103976.2	ENSMUST00000194520.2	7634	1	5301	2212	5301	-2212	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATAATGTGTGTGCA	NA	False	NA	NA	False	NA	NA	NA	134749986	134749865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_134749900_134750000
ENSMUSG00000104011.2_1	chr1	+	2336	4	NNC	ENSMUSG00000104011.2	novel	540	3	NA	NA	-3942	489	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	3.29983164553722	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAATCCGACTGTGTTG	7954	False	NA	NA	False	NA	NA	NA	164286068	164292047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr1_+_164287310_164289944_164290168_164290325_164290407_164291256
ENSMUSG00000104022.2_0	chr1	+	171	1	ISM	ENSMUSG00000104022.2	ENSMUST00000192860.2	916	2	1356	9	1356	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATCTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	183202941	183203112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_+_183202900_183203100
ENSMUSG00000104063.2_0	chr18	+	4688	4	FSM	ENSMUSG00000104063.2	ENSMUST00000194928.2	4713	4	21	4	21	-4	multi-exon	FALSE	canonical	0	0	junction_1	104.703815063678	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTGTGACCGCGTCTGT	NA	False	NA	13	True	AATAAA	-16	NA	37884673	37974922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_37887247_37958073_37958133_37966317_37966407_37972955
ENSMUSG00000104195.2_0	chr5	+	626	1	FSM	ENSMUSG00000104195.2	ENSMUST00000192229.2	599	1	-5	-22	-5	22	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATTCTTACTGCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	134205191	134205817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_134205200_134205800
ENSMUSG00000104253.2_0	chr1	+	4964	1	FSM	ENSMUSG00000104253.2	ENSMUST00000194699.2	3058	1	824	-2730	824	2730	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATACTGCCTTGTGGTGG	NA	False	NA	NA	False	AATAAA	-11	NA	121256644	121261608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_121256600_121261600
ENSMUSG00000104277.2_1	chr2	-	180	1	FSM	ENSMUSG00000104277.2	ENSMUST00000193214.2	3789	1	2490	1119	2490	-1119	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACTACATTGCAGATGTA	NA	False	NA	-2	True	NA	NA	NA	32889837	32889657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_32889700_32889800
ENSMUSG00000104299.2_0	chr5	+	2332	1	FSM	ENSMUSG00000104299.2	ENSMUST00000192760.2	2311	1	-29	8	-29	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATAAGAGTTGCCTTGGT	382	False	NA	NA	False	NA	NA	NA	31252298	31254630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31252300_31254600
ENSMUSG00000104312.2_0	chr1	-	1900	1	FSM	ENSMUSG00000104312.2	ENSMUST00000191895.2	3076	1	1178	-2	1178	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGGCTTTTCTTCAAC	7457	False	NA	NA	False	AATAAA	-20	NA	186698622	186696722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_186696700_186698600
ENSMUSG00000104346.2_0	chr18	+	2659	1	NIC	ENSMUSG00000104346.2	novel	4720	4	NA	NA	43	-164865	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTTTTCTCTACCCGT	338	False	NA	NA	False	AGTAAA	-19	NA	37807402	37810061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_37807400_37810100
ENSMUSG00000104366.2_0	chr1	-	2052	1	Genic_Genomic	ENSMUSG00000104366.2	novel	NA	NA	NA	NA	1361	977	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	136531845	136529793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_-_136529800_136531800
ENSMUSG00000104394.3_0	chr1	+	3230	1	FSM	ENSMUSG00000104394.3	ENSMUST00000193542.3	3901	1	-958	1629	-958	-1629	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAGAAAAAGAA	17	False	NA	NA	False	NA	NA	NA	186967695	186970925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_186967700_186970900
ENSMUSG00000104399.2_0	chr9	+	172	1	Genic_Genomic	ENSMUSG00000104399.2	novel	NA	NA	NA	NA	1010	58	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAATTAAATTTAAAA	3213	False	NA	NA	False	NA	NA	NA	108267290	108267462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_+_108267300_108267500
ENSMUSG00000104413.2_1	chr1	-	177	1	Genic_Genomic	ENSMUSG00000104413.2	novel	NA	NA	NA	NA	5685	15	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATATCTCTTTAGA	NA	False	NA	NA	False	NA	NA	NA	171741190	171741013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_-_171741000_171741200
ENSMUSG00000104496.2_0	chr1	-	1431	1	FSM	ENSMUSG00000104496.2	ENSMUST00000191844.2	1369	1	86	-148	86	148	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAATAAAACTGAATAGGTT	1446	False	NA	NA	False	NA	NA	NA	139857260	139855829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_139855800_139857300
ENSMUSG00000104529.5_2	chr5	-	443	1	NIC	ENSMUSG00000104529.5	novel	588	2	NA	NA	479	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTGTGTGTCGCCTCCTA	4004	False	NA	-3	True	AATAAA	-16	NA	143150979	143150536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_143150500_143151000
ENSMUSG00000104605.2_0	chr3	-	1652	1	FSM	ENSMUSG00000104605.2	ENSMUST00000195887.2	2078	1	-244	670	-244	-670	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTTAGTAAGCTGGGAAT	NA	False	NA	NA	False	NA	NA	NA	37695049	37693397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_37693400_37695000
ENSMUSG00000104606.2_0	chr5	-	148	1	ISM	ENSMUSG00000104606.2	ENSMUST00000195921.2	2162	2	2031	709	2031	-709	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAATAAGAAAAATGA	NA	False	NA	NA	False	NA	NA	NA	123327620	123327472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_123327500_123327600
ENSMUSG00000104606.2_1	chr5	-	148	1	NIC	ENSMUSG00000104606.2	novel	2162	2	NA	NA	1305	-1435	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAATAAGAAAAATGA	NA	False	NA	NA	False	NA	NA	NA	123328346	123328198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123328200_123328300
ENSMUSG00000104649.2_0	chr3	+	174	1	FSM	ENSMUSG00000104649.2	ENSMUST00000198020.2	291	1	156	-39	156	39	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGATAAAAAAAAAAAAAA	NA	False	NA	-16	True	AATAAA	-7	NA	90034229	90034403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_90034200_90034400
ENSMUSG00000104665.2_0	chr5	+	4063	1	FSM	ENSMUSG00000104665.2	ENSMUST00000199829.2	2655	1	-1414	6	-1414	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTATGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45815994	45820057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_45816000_45820100
ENSMUSG00000104667.2_0	chr5	+	2264	2	FSM	ENSMUSG00000104667.2	ENSMUST00000197982.2	2249	2	-17	2	-17	-2	multi-exon	FALSE	canonical	2	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAGTGCTCTGGAGCAC	NA	False	NA	NA	False	AATAAA	-12	NA	30297920	30302682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30298047_30300544
ENSMUSG00000104682.2_1	chr5	+	1357	1	FSM	ENSMUSG00000104682.2	ENSMUST00000197174.2	2239	1	-305	1187	-305	-1187	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	145229274	145230631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_145229300_145230600
ENSMUSG00000104708.2_0	chr5	+	208	1	FSM	ENSMUSG00000104708.2	ENSMUST00000199080.2	3706	1	1846	1652	1846	-1652	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTCCCCCACCTTGTAA	1896	False	NA	NA	False	AATGAA	-12	NA	143757640	143757848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143757600_143757800
ENSMUSG00000104720.2_0	chr5	+	158	1	FSM	ENSMUSG00000104720.2	ENSMUST00000199123.2	708	1	507	43	507	-43	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATAATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	110354952	110355110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110355000_110355100
ENSMUSG00000104761.2_0	chr5	+	178	1	FSM	ENSMUSG00000104761.2	ENSMUST00000197084.2	2297	1	2096	23	2096	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGGGATTGT	NA	False	NA	NA	False	NA	NA	NA	100948710	100948888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_100948700_100948900
ENSMUSG00000104793.2_0	chr5	+	134	1	FSM	ENSMUSG00000104793.2	ENSMUST00000199788.2	2838	1	196	2508	196	-2508	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATAAATAAATAAATCTAA	NA	False	NA	NA	False	NA	NA	NA	125548756	125548890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_125548800_125548900
ENSMUSG00000104831.2_0	chr3	-	3173	1	FSM	ENSMUSG00000104831.2	ENSMUST00000197444.2	1688	1	-43	-1442	-43	1442	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAGAGACTTGTGCCC	NA	False	NA	NA	False	AATAAA	-19	NA	54542032	54538859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_54538900_54542000
ENSMUSG00000104846.2_0	chr5	-	1965	2	FSM	ENSMUSG00000104846.2	ENSMUST00000197178.2	372	2	-19	-1574	-19	1574	multi-exon	FALSE	canonical	2	7	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTCACCTGTCTCCTTG	NA	False	NA	NA	False	NA	NA	NA	43512621	43508815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_43510700_43512540
ENSMUSG00000104960.2_1	chr3	-	375	3	FSM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	68	5	-3	0	multi-exon	FALSE	canonical	3	427	junction_1	15.5	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGACTGTGTCCTGTTT	NA	False	NA	43	True	AATAAA	-16	NA	123301985	123301205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_123301310_123301465_123301512_123301760
ENSMUSG00000104960.2_2	chr3	-	580	1	FSM	ENSMUSG00000104960.2	ENSMUST00000198509.2	776	1	194	2	194	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGACTGTGTCCTGTTT	NA	False	NA	43	True	AATAAA	-16	NA	123301785	123301205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_123301200_123301800
ENSMUSG00000104960.2_3	chr3	-	625	2	ISM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	67	5	-4	0	intron_retention	FALSE	canonical	3	427	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGACTGTGTCCTGTTT	NA	False	NA	43	True	AATAAA	-16	NA	123301986	123301205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_123301310_123301465
ENSMUSG00000104986.2_0	chr5	-	973	1	FSM	ENSMUSG00000104986.2	ENSMUST00000196242.2	1007	1	34	0	34	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTGTGTGTGTGTCAT	5136	False	NA	NA	False	AATAAA	-32	NA	45827016	45826043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_45826000_45827000
ENSMUSG00000105031.2_0	chr5	+	311	1	FSM	ENSMUSG00000105031.2	ENSMUST00000199823.2	204	1	-21	-86	-21	86	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTGAG	NA	False	NA	17	True	AATAAA	-12	NA	113905162	113905473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_113905200_113905500
ENSMUSG00000105161.2_0	chr5	+	2812	1	FSM	ENSMUSG00000105161.2	ENSMUST00000196771.2	1607	1	-1190	-15	-1190	15	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCATTTCCTATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	110808067	110810879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_110808100_110810900
ENSMUSG00000105176.2_0	chr3	+	5040	1	FSM	ENSMUSG00000105176.2	ENSMUST00000197014.2	5342	1	281	21	281	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTTTGGATATCCTCCT	NA	False	NA	NA	False	AATAAA	-16	NA	34125088	34130128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_34125100_34130100
ENSMUSG00000105201.2_0	chr3	-	636	1	FSM	ENSMUSG00000105201.2	ENSMUST00000198192.2	2470	1	-196	2030	-196	-2030	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	157742242	157741606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_157741600_157742200
ENSMUSG00000105204.2_0	chr3	-	2073	8	ISM	ENSMUSG00000041263.15	ENSMUST00000166687.6	1922	9	52	0	-18	0	intron_retention	FALSE	canonical	3	31	junction_6	3.23879544250132	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	88997300	88991287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975
ENSMUSG00000105204.2_3	chr3	-	1111	3	ISM	ENSMUSG00000041263.15	ENSMUST00000166687.6	1922	9	2009	0	1705	0	3prime_fragment	FALSE	canonical	3	32	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	88995343	88991287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_88991958_88994079_88994203_88995025
ENSMUSG00000105260.2_11	chr3	-	835	4	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	504	2	NA	NA	-1	-6	multi-exon	FALSE	canonical	3	51	junction_3	13.2748718344933	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATTGCAAGCTCTCCT	NA	False	NA	-16	True	AGTAAA	-10	NA	41447626	41432017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41447522
ENSMUSG00000105260.2_8	chr3	-	1203	4	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	504	2	NA	NA	-1	-6	multi-exon	FALSE	canonical	3	17	junction_1	26.5455583227527	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATTGCAAGCTCTCCT	NA	False	NA	-16	True	AGTAAA	-10	NA	41447626	41432017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41447522
ENSMUSG00000105340.6_0	chr5	-	443	4	ISM	ENSMUSG00000029454.16	ENSMUST00000111783.8	1513	14	18081	-1	67	1	3prime_fragment	TRUE	canonical	3	56	junction_2	67.3250820026732	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTAAAGTTGCTATATAG	8806	False	NA	-5	True	AATAAA	-21	NA	121665182	121663109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_121663303_121663725_121663831_121664807_121664924_121665153
ENSMUSG00000105340.6_1	chr5	-	241	2	FSM	ENSMUSG00000029454.16	ENSMUST00000128782.8	358	2	117	0	117	0	multi-exon	FALSE	canonical	3	204	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTGCTTAAAGTTGCTA	NA	False	NA	-10	True	AATAAA	-16	NA	121663778	121663114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_121663303_121663725
ENSMUSG00000105388.2_0	chr3	+	389	1	FSM	ENSMUSG00000105388.2	ENSMUST00000197973.2	321	1	-29	-39	-29	39	mono-exon	FALSE	NA	NA	NA	NA	NA	328	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8272	False	NA	NA	False	AATAAA	-14	NA	145584745	145585134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_145584700_145585100
ENSMUSG00000105402.5_0	chr5	-	1485	4	FSM	ENSMUSG00000105402.5	ENSMUST00000198582.5	2879	4	3	1391	3	-20	multi-exon	FALSE	canonical	3	10	junction_2	4.89897948556636	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAATTAAGAACATA	NA	False	NA	NA	False	NA	NA	NA	64768040	64752590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_64753667_64759324_64759493_64767442_64767499_64767855
ENSMUSG00000105402.5_1	chr5	-	1144	3	ISM	ENSMUSG00000105402.5	ENSMUST00000198582.5	2879	4	17	7376	17	-6005	5prime_fragment	FALSE	canonical	3	10	junction_1	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCCCATTTTAACTTCT	NA	False	NA	NA	False	AATAAA	-21	NA	64768026	64758575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_64759493_64767442_64767499_64767855
ENSMUSG00000105434.2_0	chr5	-	2139	1	FSM	ENSMUSG00000105434.2	ENSMUST00000197944.2	2200	1	61	0	61	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-4	NA	122623001	122620862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_122620900_122623000
ENSMUSG00000105471.2_2	chr5	-	2012	4	NNC	ENSMUSG00000105471.2	novel	665	2	NA	NA	3	-12830	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	67.6214955961983	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTTGTCTTGGTCTTGG	NA	False	NA	-7	True	NA	NA	NA	109944161	109930102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_109931814_109932961_109933023_109933207_109933335_109944048
ENSMUSG00000105472.2_0	chr3	+	3814	1	FSM	ENSMUSG00000105472.2	ENSMUST00000196770.2	4352	1	1445	-907	1445	907	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAGCAGCAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-21	NA	99053363	99057177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_99053400_99057200
ENSMUSG00000105509.2_0	chr3	+	130	1	FSM	ENSMUSG00000105509.2	ENSMUST00000197569.2	3692	1	1577	1985	1577	-1985	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAATAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	110158907	110159037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_110158900_110159000
ENSMUSG00000105613.2_0	chr5	+	176	1	FSM	ENSMUSG00000105613.2	ENSMUST00000199279.2	6573	1	3136	3261	3136	-3261	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACCTATAATTT	NA	False	NA	NA	False	NA	NA	NA	122920723	122920899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_122920700_122920900
ENSMUSG00000105662.5_0	chr3	-	1033	6	NIC	ENSMUSG00000105662.5	novel	3135	19	NA	NA	420	2	combination_of_known_splicesites	TRUE	canonical	2	4	junction_2	13.8188277360998	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGTTAGACTCCAATGT	NA	False	NA	NA	False	AATAAA	-17	NA	35691294	35672769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_35673025_35673834_35673956_35678500_35678611_35681522_35681682_35682985_35683124_35691044
ENSMUSG00000105662.5_3	chr3	-	1197	7	NNC	ENSMUSG00000105662.5	novel	3135	19	NA	NA	438	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	14.0564338768172	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTATTGGTTAGACTCCA	NA	False	NA	NA	False	AATAAA	-13	NA	35691276	35672773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_35673025_35673834_35673956_35677231_35677418_35678500_35678611_35681522_35681682_35682985_35683124_35691044
ENSMUSG00000105676.2_0	chr3	-	1558	1	FSM	ENSMUSG00000105676.2	ENSMUST00000198011.2	1786	1	33	195	33	-195	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACCAAGTATA	NA	False	NA	NA	False	NA	NA	NA	137570102	137568544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_137568500_137570100
ENSMUSG00000105679.2_0	chr5	-	176	1	FSM	ENSMUSG00000105679.2	ENSMUST00000198617.2	2223	1	1092	955	1092	-955	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTATTTATTAATATTATT	NA	False	NA	NA	False	NA	NA	NA	140308507	140308331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_140308300_140308500
ENSMUSG00000105692.2_0	chr3	+	3217	1	FSM	ENSMUSG00000105692.2	ENSMUST00000199915.2	2740	1	-652	175	-652	-175	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCATAAAGAAACCAAGAAAA	370	False	NA	NA	False	NA	NA	NA	89117079	89120296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89117100_89120300
ENSMUSG00000105741.2_0	chr5	-	3499	1	FSM	ENSMUSG00000105741.2	ENSMUST00000199610.2	4296	1	1810	-1013	1810	1013	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAAGGCATCCTGGAGA	NA	False	NA	NA	False	AATAAA	-28	NA	29483485	29479986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_29480000_29483500
ENSMUSG00000105814.3_0	chr5	-	141	1	FSM	ENSMUSG00000105814.3	ENSMUST00000197105.3	109	1	39	-71	39	71	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGACTCC	NA	False	NA	94	True	ATTAAA	-15	NA	98623484	98623343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_98623300_98623500
ENSMUSG00000105837.5_0	chr3	-	687	3	FSM	ENSMUSG00000105837.5	ENSMUST00000197370.5	655	3	-23	-9	-23	9	multi-exon	FALSE	canonical	2	5	junction_2	7.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTTTTTTCTTGAAAATA	6938	False	NA	NA	False	AATAAA	-17	NA	129325781	129321106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_129321464_129324707_129324814_129325557
ENSMUSG00000105851.2_0	chr5	+	1360	1	FSM	ENSMUSG00000105851.2	ENSMUST00000197965.2	956	1	-416	12	-416	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTAACGTTGTTGGACT	NA	False	NA	NA	False	AATAAA	-45	NA	137500518	137501878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_137500500_137501900
ENSMUSG00000105852.5_0	chr3	+	1984	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	126	1572	-13	661	multi-exon	FALSE	canonical	3	910	junction_4	50.9162953856864	1300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCCTCCCCAGAGCTG	NA	False	NA	11	True	AATAAA	-15	NA	105866810	105875504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
ENSMUSG00000105852.5_2	chr3	+	2474	9	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-20	661	intron_retention	FALSE	canonical	3	910	junction_4	50.4256878981338	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCCTCCCCAGAGCTG	NA	False	NA	11	True	AATAAA	-15	NA	105866803	105875504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873742_105874478
ENSMUSG00000105852.5_8	chr3	+	3074	8	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-8	661	intron_retention	FALSE	canonical	3	910	junction_4	51.9076888646114	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCCTCCCCAGAGCTG	NA	False	NA	11	True	AATAAA	-15	NA	105866815	105875504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105873742_105874478
ENSMUSG00000105867.3_0	chr5	-	1710	1	FSM	ENSMUSG00000105867.3	ENSMUST00000197216.3	1850	1	188	-48	188	48	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGAGAATGTCCATCAGC	9929	False	NA	NA	False	ATTAAA	-15	NA	108515600	108513890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_108513900_108515600
ENSMUSG00000105929.2_0	chr5	+	1455	1	FSM	ENSMUSG00000105929.2	ENSMUST00000196072.2	1249	1	-222	16	-222	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGTGTATATATGTGAAT	NA	False	NA	NA	False	AATAAA	-13	NA	33141691	33143146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_33141700_33143100
ENSMUSG00000105941.2_0	chr3	+	625	1	FSM	ENSMUSG00000105941.2	ENSMUST00000198429.2	1138	1	704	-191	704	191	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAAGAAAATGTAGA	741	False	NA	NA	False	NA	NA	NA	89820926	89821551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89820900_89821600
ENSMUSG00000105957.2_0	chr3	-	3109	1	FSM	ENSMUSG00000105957.2	ENSMUST00000199187.2	2491	1	-626	8	-626	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTAACATGAGATTTTT	NA	False	NA	NA	False	NA	NA	NA	133016395	133013286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_133013300_133016400
ENSMUSG00000105960.2_0	chr3	+	471	2	ISM	ENSMUSG00000105960.2	ENSMUST00000199846.2	3871	5	4162	1994	4162	-1994	3prime_fragment	FALSE	canonical	3	92	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGGTAATGGGATCCCTG	NA	False	NA	7	True	NA	NA	NA	129551568	129555539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_129551788_129555287
ENSMUSG00000105961.2_2	chr3	+	2845	4	NNC	ENSMUSG00000105961.2	novel	1027	3	NA	NA	9092	6601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	0.942809041582063	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCATTGGTTTCTGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	108143194	108154164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_108143301_108145985_108146078_108146699_108149297_108154114
ENSMUSG00000105970.2_0	chr5	-	178	1	FSM	ENSMUSG00000105970.2	ENSMUST00000197656.2	2887	1	1218	1491	1218	-1491	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAGAAAAGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	122631753	122631575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_122631600_122631800
ENSMUSG00000105987.5_0	chr5	-	2272	4	NNC	ENSMUSG00000105987.5	novel	345	4	NA	NA	2	3	intron_retention	FALSE	non_canonical	0	0	junction_1	8.05536398239638	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTAGTCTGAGGTCTTCT	5259	False	NA	NA	False	NA	NA	NA	23917662	23903290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_23905462_23915363_23915407_23916113_23916149_23917639
ENSMUSG00000105987.5_1	chr5	-	2266	4	NNC	ENSMUSG00000105987.5	novel	345	4	NA	NA	2	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	8.05536398239638	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACTATTCTAGTCTGAG	5259	False	NA	NA	False	NA	NA	NA	23917662	23903297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_23905463_23915363_23915407_23916113_23916149_23917639
ENSMUSG00000105987.5_10	chr5	-	3496	4	NNC	ENSMUSG00000105987.5	novel	474	3	NA	NA	1	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	8.05536398239638	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATACTATTCTAGTCTGA	5258	False	NA	NA	False	NA	NA	NA	23917663	23903298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_23905574_23914244_23915407_23916113_23916149_23917639
ENSMUSG00000105987.5_17	chr5	-	993	4	FSM	ENSMUSG00000105987.5	ENSMUST00000198984.5	345	4	-3	-645	1	-513	multi-exon	FALSE	canonical	2	2	junction_3	6.68331255192114	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCAAAAAAATAAAA	5258	False	NA	NA	False	NA	NA	NA	23917663	23904580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_23905472_23915363_23915407_23916113_23916149_23917639
ENSMUSG00000105987.5_2	chr5	-	1611	1	FSM	ENSMUSG00000105987.5	ENSMUST00000198331.2	981	1	-634	4	-634	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACTATTCTAGTCTGAG	NA	False	NA	NA	False	NA	NA	NA	23904908	23903297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_23903300_23904900
ENSMUSG00000105987.5_3	chr5	-	2264	4	NIC	ENSMUSG00000105987.5	novel	345	4	NA	NA	2	2	intron_retention	FALSE	canonical	1	2	junction_1	7.54247233265651	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTAGTCTGAGGTCTTC	5259	False	NA	NA	False	NA	NA	NA	23917662	23903291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_23905455_23915363_23915407_23916113_23916149_23917639
ENSMUSG00000105987.5_6	chr5	-	2259	3	ISM	ENSMUSG00000105987.5	ENSMUST00000198984.5	345	4	1511	-1934	-726	2	3prime_fragment	FALSE	canonical	2	7	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTAGTCTGAGGTCTTC	6772	False	NA	NA	False	NA	NA	NA	23916149	23903291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_23905472_23915363_23915407_23916113
ENSMUSG00000105993.2_0	chrX	+	2074	2	Genic_Genomic	ENSMUSG00000105993.2	novel	1834	1	NA	NA	-11	587	multi-exon	FALSE	canonical	2	5	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATGCTCTTTCCTTTGT	NA	False	NA	NA	False	AATAGA	-11	NA	41578556	41580988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_41580411_41580768
ENSMUSG00000106015.2_0	chr5	+	947	2	FSM	ENSMUSG00000106015.2	ENSMUST00000200582.2	1028	2	61	20	61	-20	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGACTATTACTATTA	NA	False	NA	NA	False	AATAAA	-6	NA	127655874	127657153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_127656171_127656502
ENSMUSG00000106019.2_0	chr3	-	1805	1	FSM	ENSMUSG00000106019.2	ENSMUST00000199072.2	1731	1	-74	0	-74	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTGTTGTTGTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	22130380	22128575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_22128600_22130400
ENSMUSG00000106032.2_0	chr3	+	4978	1	FSM	ENSMUSG00000106032.2	ENSMUST00000198041.2	4886	1	-105	13	-105	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAGAGGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	94320602	94325580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_94320600_94325600
ENSMUSG00000106037.2_0	chr3	+	245	1	FSM	ENSMUSG00000106037.2	ENSMUST00000196114.2	346	1	132	-31	132	31	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTTGCTGGCAAAAAAA	NA	False	NA	23	True	NA	NA	NA	119503296	119503541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_119503300_119503500
ENSMUSG00000106071.2_0	chr3	+	181	1	FSM	ENSMUSG00000106071.2	ENSMUST00000199604.2	2612	1	395	2036	395	-2036	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAAGTAGTATCTATG	NA	False	NA	NA	False	NA	NA	NA	141392708	141392889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_141392700_141392900
ENSMUSG00000106103.2_0	chr5	-	1064	1	FSM	ENSMUSG00000106103.2	ENSMUST00000199082.2	1380	1	16	300	16	-300	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	108460599	108459535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_108459500_108460600
ENSMUSG00000106223.2_11	chr3	-	576	3	NIC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-2	-25	combination_of_known_junctions	FALSE	canonical	3	120	junction_2	9.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAATGCACCCGGTTG	NA	False	NA	-27	True	AATAAA	-2	NA	41482881	41476663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_41476891_41477378_41477680_41482833
ENSMUSG00000106223.2_12	chr3	-	452	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-3	-35	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_2	22	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAACAAAGGAAATG	NA	False	NA	-37	True	AATGAA	-13	NA	41482882	41476673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_41476891_41477378_41477565_41482833
ENSMUSG00000106223.2_13	chr3	-	303	2	ISM	ENSMUSG00000106223.2	ENSMUST00000198272.2	474	3	-19	971	11	-14	5prime_fragment	FALSE	canonical	3	29	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCGGTTGATGTCAATGGA	NA	False	NA	-16	True	AATAAA	-13	NA	41482898	41476652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_-_41476891_41482833
ENSMUSG00000106223.2_14	chr3	-	592	3	FSM	ENSMUSG00000106223.2	ENSMUST00000199633.2	643	3	27	24	-3	-24	multi-exon	FALSE	canonical	3	84	junction_1	18	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAATGCACCCGGTTGA	NA	False	NA	-26	True	AATAAA	-3	NA	41482882	41476662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_41476891_41477364_41477680_41482833
ENSMUSG00000106223.2_15	chr3	-	464	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-1	-35	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	5.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAACAAAGGAAATG	NA	False	NA	-37	True	AATGAA	-13	NA	41482880	41476673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_41476891_41477364_41477565_41482833
ENSMUSG00000106223.2_16	chr3	-	498	2	FSM	ENSMUSG00000106223.2	ENSMUST00000197509.2	443	2	-7	-48	-7	-35	multi-exon	FALSE	canonical	3	139	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAACAAAGGAAATG	NA	False	NA	-37	True	AATGAA	-13	NA	41477659	41476673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_41476891_41477378
ENSMUSG00000106223.2_2	chr3	-	711	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	0	14032	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	43.6942501938184	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCTTTGGTCAT	NA	False	NA	-5	True	NA	NA	NA	41482879	41461649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477378_41477565_41482833
ENSMUSG00000106223.2_6	chr3	-	830	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-1	14035	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	46.618129520606	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGCTTTGGTCATGGT	NA	False	NA	-2	True	NA	NA	NA	41482880	41461646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477378_41477680_41482833
ENSMUSG00000106224.2_1	chr3	-	3068	1	FSM	ENSMUSG00000106224.2	ENSMUST00000197391.2	1808	1	-32	-1228	-32	1228	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	121517083	121514015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_121514000_121517100
ENSMUSG00000106229.2_0	chr5	+	159	1	FSM	ENSMUSG00000106229.2	ENSMUST00000198244.2	2858	1	2679	20	2679	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATGAAAAAAGATT	5864	False	NA	NA	False	NA	NA	NA	30975642	30975801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_30975600_30975800
ENSMUSG00000106241.2_0	chr5	-	2737	1	FSM	ENSMUSG00000106241.2	ENSMUST00000196083.2	2023	1	-178	-536	-178	536	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTGATCAAACGTGTGT	NA	False	NA	NA	False	NA	NA	NA	25894571	25891834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_25891800_25894600
ENSMUSG00000106317.2_0	chr3	-	2252	1	FSM	ENSMUSG00000106317.2	ENSMUST00000198060.2	1247	1	-232	-773	-232	773	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAAACAGTTGTGTGGCT	NA	False	NA	NA	False	AATAAA	-8	NA	105634695	105632443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_105632400_105634700
ENSMUSG00000106383.2_0	chr3	+	168	1	FSM	ENSMUSG00000106383.2	ENSMUST00000200640.2	1742	1	456	1118	456	-1118	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGACATACTG	271	False	NA	NA	False	NA	NA	NA	95547070	95547238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_95547100_95547200
ENSMUSG00000106388.2_1	chrX	-	1099	3	FSM	ENSMUSG00000106388.2	ENSMUST00000197804.2	322	3	-675	-102	-675	102	multi-exon	FALSE	canonical	3	10	junction_2	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCCTCAGGTGTCTTC	2276	False	NA	NA	False	AATAAA	-15	NA	36861883	36857920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_36858142_36859175_36859222_36861051
ENSMUSG00000106447.2_1	chr3	+	1558	4	FSM	ENSMUSG00000028102.16	ENSMUST00000118557.8	2424	4	224	642	1	-2	multi-exon	FALSE	canonical	3	279	junction_3	9.46337971105226	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACTTTTTTATTCAATT	NA	False	NA	7	True	ATTAAA	-14	NA	96542969	96552040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890
ENSMUSG00000106447.2_3	chr3	+	1900	3	NIC	ENSMUSG00000028102.16	novel	2424	4	NA	NA	0	-2	intron_retention	FALSE	canonical	3	279	junction_2	10.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACTTTTTTATTCAATT	NA	False	NA	7	True	ATTAAA	-14	NA	96542968	96552040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_96543060_96543989_96544649_96550890
ENSMUSG00000106536.2_0	chr3	+	177	1	FSM	ENSMUSG00000106536.2	ENSMUST00000199972.2	3292	1	246	2869	246	-2869	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAACTATCCTTTC	6921	False	NA	NA	False	NA	NA	NA	97169916	97170093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_97169900_97170100
ENSMUSG00000106550.2_0	chr3	+	2317	2	NIC	ENSMUSG00000106550.2	novel	464	3	NA	NA	-192	-4112	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATAGTCATTTGCATAT	NA	False	NA	NA	False	ATTAAA	-21	NA	142587156	142599894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_142587382_142597802
ENSMUSG00000106674.2_2	chr5	+	1375	2	FSM	ENSMUSG00000106674.2	ENSMUST00000202583.2	299	2	-8	-1068	-8	1068	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTACATACTGTTTGAGTC	NA	False	NA	0	True	NA	NA	NA	149565066	149572323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_149565217_149571098
ENSMUSG00000106717.2_0	chr5	-	174	1	FSM	ENSMUSG00000106717.2	ENSMUST00000200853.2	3972	1	361	3437	361	-3437	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAACCTAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	31371298	31371124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31371100_31371300
ENSMUSG00000106820.2_0	chr5	+	808	3	FSM	ENSMUSG00000106820.2	ENSMUST00000201128.2	1081	3	2	271	2	-271	multi-exon	FALSE	canonical	3	33	junction_2	30.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGTGATGATTTGAATAT	NA	False	NA	3	True	NA	NA	NA	147355412	147359583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_147355512_147357439_147357607_147359041
ENSMUSG00000106820.2_10	chr5	+	644	2	NIC	ENSMUSG00000106820.2	novel	1081	3	NA	NA	-1	-271	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGTGATGATTTGAATAT	NA	False	NA	3	True	NA	NA	NA	147355409	147359583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_147355512_147359041
ENSMUSG00000106820.2_4	chr5	+	1835	5	NNC	ENSMUSG00000106820.2	novel	1081	3	NA	NA	2	-271	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	38.382124745772	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGTGATGATTTGAATAT	NA	False	NA	3	True	NA	NA	NA	147355412	147359583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_+_147355512_147357439_147357607_147357723_147358028_147358173_147358480_147358624
ENSMUSG00000106847.2_0	chr15	-	4349	1	FSM	ENSMUSG00000106847.2	ENSMUST00000202826.2	4725	1	372	4	372	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAACATGGGAAAGTTC	NA	False	NA	-2	True	AATAAA	-23	NA	72681801	72677452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_72677500_72681800
ENSMUSG00000106864.4_0	chr5	-	3708	19	FSM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	235	609	0	-93	multi-exon	FALSE	canonical	3	356	junction_18	84.1706086352278	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCAATCATTCTTTTACA	NA	False	NA	-27	True	NA	NA	NA	31337253	31313957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
ENSMUSG00000106864.4_3	chr5	-	3693	18	ISM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	5648	599	5	-83	3prime_fragment	FALSE	canonical	3	433	junction_16	63.3729554927753	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTTACAAGTCATGATT	NA	False	NA	-17	True	NA	NA	NA	31331840	31313947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575
ENSMUSG00000106864.4_4	chr5	-	3840	20	NIC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	0	-90	combination_of_known_junctions	FALSE	canonical	3	165	junction_17	146.210507369935	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATCATTCTTTTACAAGT	NA	False	NA	-24	True	NA	NA	NA	31337253	31313954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575_31331840_31337227
ENSMUSG00000106918.4_3	chr5	+	414	4	FSM	ENSMUSG00000106918.4	ENSMUST00000031024.14	478	4	60	4	14	-2	multi-exon	FALSE	canonical	3	1273	junction_1	440.713814926043	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTCTTGTCTCTTAGAG	NA	False	NA	15	True	AATAAA	-18	NA	31771342	31779984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31771367_31771946_31771966_31773724_31773832_31779720
ENSMUSG00000106918.4_4	chr5	+	2749	2	FSM	ENSMUSG00000106918.4	ENSMUST00000201620.2	2741	2	-14	6	14	-1	multi-exon	FALSE	canonical	3	2333	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTATACTCTTGTCTCTT	NA	False	NA	11	True	AATAAA	-14	NA	31771342	31779980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31773832_31779720
ENSMUSG00000106918.4_6	chr5	+	386	3	FSM	ENSMUSG00000106918.4	ENSMUST00000201923.2	773	3	451	-64	451	-1	multi-exon	FALSE	canonical	3	1626	junction_1	353.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTATACTCTTGTCTCTT	NA	False	NA	11	True	AATAAA	-14	NA	31771946	31779980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_31771966_31773724_31773832_31779720
ENSMUSG00000106918.4_7	chr5	+	396	3	NIC	ENSMUSG00000106918.4	novel	478	4	NA	NA	14	-1	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	1111.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTCTTGTCTCTTAGAGG	NA	False	NA	16	True	AATAAA	-19	NA	31771342	31779985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_31771367_31773724_31773832_31779720
ENSMUSG00000106943.3_0	chr5	+	531	3	FSM	ENSMUSG00000106943.3	ENSMUST00000120364.2	575	3	42	2	36	-1	multi-exon	FALSE	canonical	3	72	junction_1	23.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTTCACTTGTTC	NA	False	NA	17	True	AATAAA	-19	NA	74253779	74254996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_74253801_74254018_74254081_74254548
ENSMUSG00000106943.3_1	chr5	+	1038	2	FSM	ENSMUSG00000106943.3	ENSMUST00000117249.2	1036	2	-3	1	3	-1	multi-exon	FALSE	canonical	3	72	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTTCACTTGTTC	NA	False	NA	17	True	AATAAA	-19	NA	74253740	74254996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_74253801_74254018
ENSMUSG00000106943.3_2	chr5	+	972	1	FSM	ENSMUSG00000093355.3	ENSMUST00000175614.3	121	1	-165	-686	-165	686	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTGTTCACTTGTTCT	NA	False	NA	18	True	AATAAA	-20	NA	74254025	74254997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_74254000_74255000
ENSMUSG00000106943.3_3	chr5	+	727	2	ISM	ENSMUSG00000106943.3	ENSMUST00000120364.2	575	3	64	2	58	-1	3prime_fragment	FALSE	canonical	3	119	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTTCACTTGTTC	NA	False	NA	17	True	AATAAA	-19	NA	74253801	74254996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_74254081_74254548
ENSMUSG00000106951.2_0	chr5	-	4217	2	FSM	ENSMUSG00000106951.2	ENSMUST00000152575.2	2541	2	0	-1676	0	650	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTCAACTCTTATCATT	NA	False	NA	NA	False	NA	NA	NA	148932025	148926215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_148930335_148931927
ENSMUSG00000106968.2_0	chr5	+	1743	2	FSM	ENSMUSG00000106968.2	ENSMUST00000202711.2	848	2	1	-896	1	896	multi-exon	FALSE	canonical	3	15	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTATGTTGTTGTTTCC	NA	False	NA	NA	False	AATACA	-22	NA	74103724	74106615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_74103968_74105115
ENSMUSG00000106990.2_0	chr6	-	4703	1	FSM	ENSMUSG00000106990.2	ENSMUST00000201159.2	3798	1	-562	-343	-562	343	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTACAATAGTGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	28215366	28210663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_28210700_28215400
ENSMUSG00000107002.2_0	chr16	-	713	1	FSM	ENSMUSG00000107002.2	ENSMUST00000202722.2	1445	1	10	722	10	-722	mono-exon	FALSE	NA	NA	NA	NA	NA	320	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATAGTCTGAATGTGGT	NA	False	NA	-10	True	ATTAAA	-12	NA	31767302	31766589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31766600_31767300
ENSMUSG00000107023.3_11	chr7	+	6412	6	ISM	ENSMUSG00000107023.3	ENSMUST00000189629.5	12746	31	33350	1787	-7151	-1787	intron_retention	FALSE	canonical	3	23	junction_3	36.7390800102561	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATATTGTCTAATTGCTC	NA	False	NA	14	True	AATAAA	-17	NA	127152105	127164439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127152149_127152346_127152467_127156579_127156781_127156937_127157022_127157139_127160958_127162293
ENSMUSG00000107023.3_6	chr7	+	1056	3	FSM	ENSMUSG00000106715.4	ENSMUST00000084563.11	1054	3	-4	2	-4	-2	multi-exon	FALSE	canonical	3	119	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTGTCTAATTGCTCT	NA	False	NA	15	True	AATAAA	-18	NA	127160557	127164440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127160958_127162293_127162465_127163955
ENSMUSG00000107029.2_0	chr5	-	176	1	FSM	ENSMUSG00000107029.2	ENSMUST00000201893.2	3471	1	2780	515	2780	-515	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATATTTTTAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	135643373	135643197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_135643200_135643400
ENSMUSG00000107096.4_0	chr5	-	2862	1	ISM	ENSMUSG00000107096.4	ENSMUST00000201992.2	4620	2	4208	2	4088	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTTTGAAAAGTGTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	150526260	150523398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_150523400_150526300
ENSMUSG00000107121.2_0	chr5	-	1413	1	FSM	ENSMUSG00000107121.2	ENSMUST00000201728.2	768	1	-639	-6	-639	6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATTAGTTTTCCTTTAAA	NA	False	NA	NA	False	AATACA	-23	NA	115770514	115769101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115769100_115770500
ENSMUSG00000107142.2_0	chr5	-	1296	2	NNC	ENSMUSG00000107142.2	novel	1535	2	NA	NA	-1200	2	intron_retention	FALSE	canonical	3	124	junction_1	0	91	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGGTTATGTCTTTTG	722	False	NA	0	True	NA	NA	NA	31646492	31643974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_31645206_31646427
ENSMUSG00000107142.2_1	chr5	-	1421	2	NNC	ENSMUSG00000107142.2	novel	1535	2	NA	NA	-1197	2	intron_retention	FALSE	canonical	3	94	junction_1	0	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGGTTATGTCTTTTG	725	False	NA	0	True	NA	NA	NA	31646489	31643974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr5_-_31645334_31646427
ENSMUSG00000107142.2_2	chr5	-	966	1	NIC	ENSMUSG00000107142.2	novel	420	2	NA	NA	352	2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGGTTATGTCTTTTG	2274	False	NA	0	True	NA	NA	NA	31644940	31643974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_31644000_31644900
ENSMUSG00000107164.2_0	chr5	+	2355	1	FSM	ENSMUSG00000107164.2	ENSMUST00000201035.2	1721	1	-1064	430	-1064	-430	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCTAGAATTTCCCCTT	NA	False	NA	NA	False	ATTAAA	-11	NA	149364261	149366616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_149364300_149366600
ENSMUSG00000107176.2_0	chr6	-	467	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	2	-46	2	46	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGCCTACA	NA	False	NA	-14	True	ATTAAA	-13	NA	66852725	66852258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_66852300_66852700
ENSMUSG00000107181.2_0	chr7	+	5611	4	Fusion	ENSMUSG00000071952.4_ENSMUSG00000107181.2	novel	378	4	NA	NA	10	2788	multi-exon	FALSE	canonical	3	100	junction_3	9.20144916122817	210	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	-22	True	NA	NA	NA	42727484	42752055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_+_42727598_42741712_42741840_42742038_42742100_42746745
ENSMUSG00000107277.2_0	chr5	-	3049	1	FSM	ENSMUSG00000107277.2	ENSMUST00000202073.2	4786	1	298	1439	298	-1439	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGCTTAAATTAAGTAGAAA	NA	False	NA	NA	False	NA	NA	NA	32768851	32765802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_32765800_32768900
ENSMUSG00000107283.4_1	chr5	-	1676	8	FSM	ENSMUSG00000107283.4	ENSMUST00000154241.8	1724	8	32	16	-1	-7	multi-exon	FALSE	canonical	3	233	junction_7	57.209960599853	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATCAAACAAGAATTGT	NA	False	NA	NA	False	NA	NA	NA	31311563	31298013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUSG00000107283.4_2	chr5	-	1685	8	FSM	ENSMUSG00000107283.4	ENSMUST00000202241.4	903	8	7	-789	0	-6	multi-exon	FALSE	canonical	3	21	junction_2	130.575335984048	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATCAAACAAGAATTGTG	NA	False	NA	NA	False	NA	NA	NA	31311565	31298012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31299195_31302043_31302097_31302583_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUSG00000107283.4_3	chr5	-	1755	8	FSM	ENSMUSG00000107283.4	ENSMUST00000200864.4	878	8	-5	-872	-4	-6	multi-exon	FALSE	canonical	3	9	junction_7	132.664376283514	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATCAAACAAGAATTGTG	NA	False	NA	NA	False	NA	NA	NA	31311541	31298012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311434
ENSMUSG00000107283.4_6	chr5	-	1651	7	ISM	ENSMUSG00000107283.4	ENSMUST00000154241.8	1724	8	506	15	-3	-6	3prime_fragment	FALSE	canonical	3	328	junction_5	25.2943779436371	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATCAAACAAGAATTGTG	NA	False	NA	NA	False	NA	NA	NA	31311089	31298012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011
ENSMUSG00000107283.4_8	chr5	-	1651	7	FSM	ENSMUSG00000107283.4	ENSMUST00000200744.4	1653	7	-4	6	2	-6	multi-exon	FALSE	canonical	3	7	junction_2	140.104722737434	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATCAAACAAGAATTGTG	NA	False	NA	NA	False	NA	NA	NA	31311570	31298012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_31299195_31302043_31302097_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUSG00000107310.2_0	chr6	+	3762	1	FSM	ENSMUSG00000107310.2	ENSMUST00000202891.2	3039	1	-194	-529	-146	529	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	36933590	36937352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_36933600_36937400
ENSMUSG00000107383.2_0	chr7	-	591	1	FSM	ENSMUSG00000107383.2	ENSMUST00000201488.2	1342	1	829	-78	829	78	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-16	NA	116424257	116423666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_116423700_116424300
ENSMUSG00000107385.4_11	chr5	+	3524	3	ISM	ENSMUSG00000107385.4	ENSMUST00000201973.4	2764	5	30	709	24	-709	intron_retention	FALSE	canonical	3	7	junction_2	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACACCATCTTTCTTTCT	8056	False	NA	NA	False	NA	NA	NA	67621269	67627465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_67621362_67623669_67623772_67624135
ENSMUSG00000107385.4_12	chr5	+	1752	1	ISM	ENSMUSG00000107385.4	ENSMUST00000201973.4	2764	5	4934	249	4928	-249	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGTAACTGTAATTTTG	NA	False	NA	NA	False	NA	NA	NA	67626173	67627925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_67626200_67627900
ENSMUSG00000107385.4_3	chr5	+	2373	5	FSM	ENSMUSG00000107385.4	ENSMUST00000201973.4	2764	5	14	377	8	-377	multi-exon	TRUE	canonical	3	7	junction_2	4.76969600708473	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGGGACTTGGTTAAAAA	8040	False	NA	NA	False	NA	NA	NA	67621253	67627797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_67621362_67623669_67623772_67624135_67624364_67625218_67625348_67625991
ENSMUSG00000107385.4_9	chr5	+	1667	4	ISM	ENSMUSG00000107385.4	ENSMUST00000201973.4	2764	5	27	1714	21	-1714	intron_retention	FALSE	canonical	3	7	junction_2	4.98887651569859	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGGCCTCTCTTCCCATCT	8053	False	NA	NA	False	NA	NA	NA	67621266	67626460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_67621362_67623669_67623772_67624135_67624364_67625218
ENSMUSG00000107470.3_0	chr7	+	878	1	FSM	ENSMUSG00000107470.3	ENSMUST00000203929.3	795	1	-13	-70	-13	70	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAATTAGA	NA	False	NA	NA	False	AATAAA	-15	NA	3230828	3231706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_3230800_3231700
ENSMUSG00000107476.4_4	chr6	+	2002	4	NNC	ENSMUSG00000107476.4	novel	1776	6	NA	NA	-13	-7994	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4.96655480858378	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGTGTTGGTCATGGT	2590	False	NA	11	True	NA	NA	NA	48481294	48493352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_48481485_48485205_48485318_48488748_48489074_48491977
ENSMUSG00000107476.4_9	chr6	+	2325	1	ISM	ENSMUSG00000107476.4	ENSMUST00000204484.3	6065	7	28114	6	20064	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATTGTTGTCTTTATA	1091	False	NA	NA	False	AATAAA	-11	NA	48509435	48511760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_48509400_48511800
ENSMUSG00000107479.2_0	chr6	-	327	2	NNC	ENSMUSG00000107479.2	novel	479	2	NA	NA	51	2	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAGTTGCTGTGGCCATGG	NA	False	NA	NA	False	NA	NA	NA	66442632	66431175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_66431365_66442494
ENSMUSG00000107539.2_0	chr6	+	2142	3	ISM	ENSMUSG00000107539.2	ENSMUST00000204137.2	798	5	-28	13455	-28	-13455	5prime_fragment	FALSE	canonical	3	155	junction_1	14	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTTATTTCTTTGTA	NA	False	NA	12	True	AATAAA	-14	NA	86403611	86409157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_86403673_86404654_86404801_86407222
ENSMUSG00000107539.2_2	chr6	+	3625	2	ISM	ENSMUSG00000046679.17	ENSMUST00000203568.3	732	3	5362	-3012	-62	3012	3prime_fragment	FALSE	canonical	3	35	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTGTCTTGCCTATGTA	6830	False	NA	NA	False	ATTAAA	-13	NA	86420732	86425815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_+_86420958_86422415
ENSMUSG00000107605.2_0	chr6	-	2750	1	FSM	ENSMUSG00000107605.2	ENSMUST00000204442.2	1758	1	-989	-3	-989	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTGTGGTGTGACT	NA	False	NA	NA	False	NA	NA	NA	90439439	90436689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_90436700_90439400
ENSMUSG00000107666.2_2	chr6	-	1183	4	NNC	ENSMUSG00000107666.2	novel	1505	9	NA	NA	53549	-1040	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	4.54606056566195	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGCAAAAGTATGTGTA	NA	False	NA	NA	False	NA	NA	NA	134326829	134286953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_-_134287767_134291473_134291617_134293190_134293294_134326705
ENSMUSG00000107677.3_1	chr11	+	2256	4	NNC	ENSMUSG00000107677.3	novel	2719	3	NA	NA	-1312	-214	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	4.18993502999218	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCAATAATGTTATGTC	1835	False	NA	NA	False	AATAAA	-5	NA	58642247	58650283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_58642396_58643956_58644171_58647616_58647657_58648429
ENSMUSG00000107677.3_2	chr11	+	3621	3	FSM	ENSMUSG00000107677.3	ENSMUST00000215071.2	2719	3	-1296	394	-1296	-394	multi-exon	FALSE	canonical	3	11	junction_1	1.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCACTTTGTCTCTTTCC	1851	False	NA	NA	False	AATAAA	-26	NA	58642263	58650103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_58644171_58647616_58647657_58648429
ENSMUSG00000107755.2_0	chr6	-	1637	1	FSM	ENSMUSG00000107755.2	ENSMUST00000204513.2	1093	1	-96	-448	-96	448	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAGAGAATT	NA	False	NA	NA	False	AATAAA	-15	NA	60748139	60746502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_60746500_60748100
ENSMUSG00000107789.2_0	chr6	+	3103	3	NNC	ENSMUSG00000052751.17	novel	3145	3	NA	NA	16	-6	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	12.5	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTAGTGGCTGGTGGTG	NA	False	NA	14	True	AATAAA	-12	NA	48570849	48576009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_48570987_48571724_48571911_48573229
ENSMUSG00000107789.2_1	chr6	+	3022	3	NNC	ENSMUSG00000052751.17	novel	3057	3	NA	NA	-14	-6	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	2	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTAGTGGCTGGTGGTG	NA	False	NA	14	True	AATAAA	-12	NA	48570859	48576009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_48570987_48571795_48571911_48573229
ENSMUSG00000107789.2_2	chr6	+	3838	2	NNC	ENSMUSG00000052751.17	novel	989	2	NA	NA	-19	-4	intron_retention	FALSE	canonical	3	26	junction_1	0	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTAGTGGCTGGTGGTGTT	NA	False	NA	16	True	AATAAA	-14	NA	48570854	48576011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_48571911_48573229
ENSMUSG00000107789.2_3	chr6	+	2900	2	NNC	ENSMUSG00000052751.17	novel	2959	2	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTAGTGGCTGGTGGTGTT	NA	False	NA	16	True	AATAAA	-14	NA	48570868	48576011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_48570987_48573229
ENSMUSG00000107789.2_7	chr6	+	2401	2	FSM	ENSMUSG00000007216.7	ENSMUST00000061720.5	4083	2	2	1680	2	-1680	multi-exon	FALSE	canonical	3	52	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGTGTCACTGTTCTTT	466	False	NA	7	True	AATGAA	-15	NA	48590115	48598481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_48590194_48596158
ENSMUSG00000107868.2_0	chr6	+	2363	1	FSM	ENSMUSG00000107868.2	ENSMUST00000204407.2	2368	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTACCTGGCCCATTGT	NA	False	NA	NA	False	NA	NA	NA	122788129	122790492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_122788100_122790500
ENSMUSG00000107877.3_3	chr11	-	1085	2	ISM	ENSMUSG00000107877.3	ENSMUST00000108506.10	4332	19	-675	48226	-675	-48226	5prime_fragment	FALSE	canonical	3	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCATTTTCTAGATTTAG	NA	False	NA	NA	False	AATAAA	-19	NA	72094872	72093148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_72093381_72094019
ENSMUSG00000107879.3_0	chr6	-	3977	3	FSM	ENSMUSG00000107879.3	ENSMUST00000204642.2	3843	3	700	-834	700	834	multi-exon	FALSE	canonical	2	2	junction_1	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTAAAAGAGTGTGTACTT	NA	False	NA	NA	False	NA	NA	NA	128160066	128145832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_128149276_128158875_128159043_128159699
ENSMUSG00000107881.2_0	chr6	-	2265	1	FSM	ENSMUSG00000107881.2	ENSMUST00000203092.2	4229	1	1420	544	1420	-544	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACCTCTCCTGTGTTGGT	1873	False	NA	NA	False	NA	NA	NA	5219066	5216801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_5216800_5219100
ENSMUSG00000107928.2_1	chr6	-	3472	1	ISM	ENSMUSG00000030055.17	ENSMUST00000032134.9	4308	3	17417	13	-2262	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTGCTCAAGCATGGT	NA	False	NA	-6	True	ATTAAA	-14	NA	87769319	87765847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr6_-_87765800_87769300
ENSMUSG00000107971.2_0	chr6	-	4477	1	FSM	ENSMUSG00000107971.2	ENSMUST00000204946.2	2094	1	-1264	-1119	-1264	1119	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAGAGAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120893218	120888741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_-_120888700_120893200
ENSMUSG00000108037.3_3	chr6	+	699	4	FSM	ENSMUSG00000072770.10	ENSMUST00000112413.8	672	4	14	-41	2	-9	multi-exon	FALSE	canonical	3	103	junction_3	6.54896090146283	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGAAATCTTCATTTTG	NA	False	NA	NA	False	NA	NA	NA	125026923	125028501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205
ENSMUSG00000108043.3_0	chr7	-	3254	5	NIC	ENSMUSG00000108043.3	novel	3226	7	NA	NA	20	2412	combination_of_known_splicesites	FALSE	canonical	2	7	junction_4	4.15331193145904	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATTCATAAAAATTGGAG	NA	False	NA	NA	False	NA	NA	NA	6980399	6963921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_6966692_6968979_6969038_6976160_6976339_6978232_6978301_6980219
ENSMUSG00000108043.3_1	chr7	-	3115	4	NIC	ENSMUSG00000108043.3	novel	3226	7	NA	NA	20	2451	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	4.92160768674447	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCAAGTGTGTGTGTG	NA	False	NA	NA	False	CATAAA	-28	NA	6980399	6963882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_6966692_6968979_6969038_6978232_6978301_6980219
ENSMUSG00000108111.2_0	chr6	+	582	2	NNC	ENSMUSG00000108111.2	novel	661	2	NA	NA	32432	5	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGGTGTGTAATTATAC	9386	False	NA	NA	False	AATACA	-16	NA	90495806	90496467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_90495862_90495940
ENSMUSG00000108175.2_0	chr6	+	617	5	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	26227	-9171	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	6.80073525436772	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTCTTGTTCTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	53821954	53835997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr6_+_53822096_53828082_53828119_53834180_53834359_53835502_53835591_53835823
ENSMUSG00000108207.3_0	chr5	-	1087	1	FSM	ENSMUSG00000108207.3	ENSMUST00000204589.2	792	1	1	-296	1	5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCTGTATCATACGCA	NA	False	NA	0	True	ATTAAA	-18	NA	148896489	148895402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_148895400_148896500
ENSMUSG00000108207.3_1	chr5	-	417	2	FSM	ENSMUSG00000108207.3	ENSMUST00000204570.2	690	2	273	0	249	0	multi-exon	FALSE	canonical	3	15	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATGTGTCTGTATCAT	NA	False	NA	-5	True	ATTAAA	-13	NA	148896241	148895407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_148895541_148895957
ENSMUSG00000108218.3_0	chr11	-	3267	2	ISM	ENSMUSG00000108218.3	ENSMUST00000203403.3	9812	3	8738	169	-3138	-169	3prime_fragment	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCGGCAGAAGAGAGAGGG	NA	False	NA	NA	False	NA	NA	NA	52050248	52045717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_-_52047340_52048603
ENSMUSG00000108314.2_0	chr7	-	824	1	FSM	ENSMUSG00000108314.2	ENSMUST00000206136.2	1756	1	1286	-354	1286	354	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	27582649	27581825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27581800_27582600
ENSMUSG00000108337.2_0	chr7	-	1322	1	FSM	ENSMUSG00000108337.2	ENSMUST00000205991.2	1108	1	4	-218	4	218	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAAGTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	73336345	73335023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_73335000_73336300
ENSMUSG00000108358.2_0	chr7	-	172	1	FSM	ENSMUSG00000108358.2	ENSMUST00000205400.2	1324	1	1153	-1	1153	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTGTTGATTTTTCCC	NA	False	NA	NA	False	AATAAA	-17	NA	55623437	55623265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_55623300_55623400
ENSMUSG00000108366.2_0	chr7	-	96	1	FSM	ENSMUSG00000108366.2	ENSMUST00000206264.2	795	1	742	-43	742	43	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAACCCTACC	NA	False	NA	NA	False	AATAAA	-15	NA	16453093	16452997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_16453000_16453100
ENSMUSG00000108372.2_0	chr7	+	170	1	FSM	ENSMUSG00000108372.2	ENSMUST00000206723.2	2755	1	2360	225	2360	-225	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAGGGGGGGGGAGGGCC	NA	False	NA	NA	False	NA	NA	NA	44038183	44038353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44038200_44038400
ENSMUSG00000108389.2_0	chr7	+	2724	1	FSM	ENSMUSG00000108389.2	ENSMUST00000206885.2	2285	1	-785	346	-785	-346	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGCGAA	NA	False	NA	NA	False	NA	NA	NA	79858356	79861080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79858400_79861100
ENSMUSG00000108414.2_0	chr19	+	592	10	FSM	ENSMUSG00000108414.2	ENSMUST00000206155.2	605	10	12	1	0	0	multi-exon	FALSE	canonical	3	444	junction_1	203.637719952995	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTGTGATGGCTTATT	NA	False	NA	25	True	AATAAA	-14	NA	8700850	8703806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_15	chr19	+	573	9	FSM	ENSMUSG00000108414.2	ENSMUST00000205909.2	709	9	135	1	0	0	multi-exon	FALSE	canonical	3	781	junction_1	124.260814418706	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTGTGATGGCTTATT	NA	False	NA	25	True	AATAAA	-14	NA	8701503	8703806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_22	chr19	+	443	7	ISM	ENSMUSG00000108414.2	ENSMUST00000206135.2	744	8	513	1	8	0	3prime_fragment	FALSE	canonical	3	931	junction_1	81.5565584255627	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTGTGATGGCTTATT	NA	False	NA	25	True	AATAAA	-14	NA	8702034	8703806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_24	chr19	+	394	6	FSM	ENSMUSG00000108414.2	ENSMUST00000205852.2	510	6	114	2	-11	0	multi-exon	FALSE	canonical	3	951	junction_1	74.1145060025364	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTGTGATGGCTTAT	NA	False	NA	24	True	AATAAA	-13	NA	8702374	8703805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_26	chr19	+	361	5	FSM	ENSMUSG00000108414.2	ENSMUST00000206255.2	478	5	116	1	116	0	multi-exon	FALSE	canonical	3	1003	junction_1	60.01822639832	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTGTGATGGCTTATT	NA	False	NA	25	True	AATAAA	-14	NA	8702583	8703806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_27	chr19	+	327	4	ISM	ENSMUSG00000108414.2	ENSMUST00000206255.2	478	5	378	1	7	0	3prime_fragment	FALSE	canonical	3	1057	junction_3	47.4622657135821	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTGTGATGGCTTATT	13	False	NA	25	True	AATAAA	-14	NA	8702845	8703806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_29	chr19	+	233	2	ISM	ENSMUSG00000108414.2	ENSMUST00000206029.2	408	4	574	1	574	0	3prime_fragment	FALSE	canonical	3	1057	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTGTGATGGCTTATT	605	False	NA	25	True	AATAAA	-14	NA	8703437	8703806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_8703467_8703602
ENSMUSG00000108414.2_5	chr19	+	2941	1	FSM	ENSMUSG00000065087.3	ENSMUST00000083153.3	126	1	-2364	-451	-2364	451	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTGTGATGGCTTATT	NA	False	NA	25	True	AATAAA	-14	NA	8700865	8703806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8700900_8703800
ENSMUSG00000108415.2_0	chr7	+	525	2	NIC	ENSMUSG00000108415.2	novel	605	3	NA	NA	5	1	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	25559569	25569309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_25559652_25568866
ENSMUSG00000108461.2_0	chr7	+	764	1	FSM	ENSMUSG00000108461.2	ENSMUST00000206201.2	750	1	-15	1	-15	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCTGGATGAAGTTCTG	NA	False	NA	NA	False	AATAAA	-16	NA	116042794	116043558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_116042800_116043600
ENSMUSG00000108483.2_0	chr7	+	198	1	Genic_Genomic	ENSMUSG00000108483.2	novel	NA	NA	NA	NA	4801	28	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAACC	NA	False	NA	NA	False	NA	NA	NA	127038394	127038592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_+_127038400_127038600
ENSMUSG00000108528.2_0	chr7	-	1220	1	FSM	ENSMUSG00000108528.2	ENSMUST00000205708.2	641	1	-487	-92	-487	92	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCTGTGTAAGATTTGTT	NA	False	NA	NA	False	AAGAAA	-14	NA	95853230	95852010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_95852000_95853200
ENSMUSG00000108551.2_0	chr7	+	175	1	FSM	ENSMUSG00000108551.2	ENSMUST00000206967.2	584	1	393	16	393	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	122594963	122595138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_122595000_122595100
ENSMUSG00000108591.2_0	chr6	+	1555	1	FSM	ENSMUSG00000108591.2	ENSMUST00000205370.2	1560	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAAGAGTGGAGTCTGG	1664	False	NA	NA	False	AATAAA	-10	NA	72416034	72417589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_72416000_72417600
ENSMUSG00000108616.2_0	chr7	+	1991	2	FSM	ENSMUSG00000108616.2	ENSMUST00000206829.2	5094	2	-28	3131	-28	-3131	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGAAGAGGTTCCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	79185762	79206650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_79185945_79204841
ENSMUSG00000108621.2_12	chr7	+	3276	1	ISM	ENSMUSG00000108621.2	ENSMUST00000188038.3	16021	6	13986	10827	13962	4552	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACCTGGAGGTTCTGTT	NA	False	NA	16	True	AATAAA	-19	NA	39215910	39219186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_39215900_39219200
ENSMUSG00000108621.2_18	chr7	+	5103	5	NIC	ENSMUSG00000108621.2	novel	16021	6	NA	NA	-11	4554	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	24.4987244565916	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTGGAGGTTCTGTTTT	NA	False	NA	18	True	AATAAA	-21	NA	39201912	39219188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_39202036_39213125_39213253_39213425_39213487_39214290_39214506_39214611
ENSMUSG00000108621.2_2	chr7	+	5043	5	NIC	ENSMUSG00000108621.2	novel	208	2	NA	NA	38	4552	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	24.0676130931175	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACCTGGAGGTTCTGTT	NA	False	NA	16	True	AATAAA	-19	NA	39193863	39219186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_39193929_39213125_39213253_39213425_39213487_39214290_39214506_39214611
ENSMUSG00000108621.2_3	chr7	+	5203	6	FSM	ENSMUSG00000108621.2	ENSMUST00000188038.3	16021	6	-9	10827	-8	4552	multi-exon	FALSE	canonical	3	26	junction_1	12.1819538662728	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACCTGGAGGTTCTGTT	NA	False	NA	16	True	AATAAA	-19	NA	39201915	39219186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_39202036_39202651_39202757_39213125_39213253_39213425_39213487_39214290_39214506_39214611
ENSMUSG00000108621.2_4	chr7	+	5199	6	NNC	ENSMUSG00000108621.2	novel	16021	6	NA	NA	0	4552	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	21.303520835768	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACCTGGAGGTTCTGTT	NA	False	NA	16	True	AATAAA	-19	NA	39201923	39219186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_39202036_39202647_39202757_39213125_39213253_39213425_39213487_39214290_39214506_39214611
ENSMUSG00000108621.2_9	chr7	+	5078	5	ISM	ENSMUSG00000108621.2	ENSMUST00000188038.3	16021	6	728	10831	704	4548	3prime_fragment	FALSE	canonical	3	54	junction_4	2.34520787991171	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGATACCTGGAGGTTC	NA	False	NA	12	True	AATAAA	-15	NA	39202652	39219182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_39202757_39213125_39213253_39213425_39213487_39214290_39214506_39214611
ENSMUSG00000108655.2_0	chr7	-	2265	1	FSM	ENSMUSG00000108655.2	ENSMUST00000206423.2	1450	1	-818	3	-818	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCATGGCTTTCTCTCTCT	2111	False	NA	NA	False	NA	NA	NA	79740997	79738732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79738700_79741000
ENSMUSG00000108738.2_0	chr7	+	2309	1	FSM	ENSMUSG00000108738.2	ENSMUST00000205941.2	4052	1	2064	-321	322	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGAATCCGATTGTCCTT	NA	False	NA	NA	False	CATAAA	-16	NA	115935560	115937869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_115935600_115937900
ENSMUSG00000108801.2_2	chr7	+	2063	5	FSM	ENSMUSG00000108801.2	ENSMUST00000205992.2	508	5	-175	-1380	-175	770	multi-exon	FALSE	canonical	1	1	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTCCTCAAAGGACATT	2718	False	NA	NA	False	NA	NA	NA	127290931	127300735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_127291202_127292872_127292975_127296253_127296369_127298101_127298271_127299328
ENSMUSG00000108815.2_1	chr7	+	3584	12	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	8939	-2	7751	2	3prime_fragment	FALSE	canonical	3	26	junction_5	11.9094378852993	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGCTTGGTCAGTATC	NA	False	NA	12	True	ATTAAA	-12	NA	127385499	127399289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127385845_127386297_127386475_127386670_127386759_127387368_127387527_127387653_127387742_127390386_127390705_127394814_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
ENSMUSG00000108815.2_13	chr7	+	1339	5	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	19698	0	18510	0	3prime_fragment	FALSE	canonical	3	51	junction_3	2.82842712474619	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGCTTGGTCAGTA	NA	False	NA	10	True	ATTAAA	-10	NA	127396258	127399287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
ENSMUSG00000108815.2_14	chr7	+	1841	4	NIC	ENSMUSG00000042308.15	novel	5927	19	NA	NA	18174	0	intron_retention	FALSE	canonical	3	51	junction_2	3.2659863237109	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGCTTGGTCAGTA	NA	False	NA	10	True	ATTAAA	-10	NA	127395922	127399287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127396419_127396498_127396896_127398262_127398401_127398477
ENSMUSG00000108815.2_15	chr7	+	1150	4	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	19967	0	18779	0	3prime_fragment	FALSE	canonical	3	51	junction_2	1.88561808316413	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGCTTGGTCAGTA	NA	False	NA	10	True	ATTAAA	-10	NA	127396527	127399287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127396610_127396775_127396896_127398262_127398401_127398477
ENSMUSG00000108815.2_16	chr7	+	1070	3	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	20213	0	19025	0	3prime_fragment	FALSE	canonical	3	51	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGCTTGGTCAGTA	NA	False	NA	10	True	ATTAAA	-10	NA	127396773	127399287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127396896_127398262_127398401_127398477
ENSMUSG00000108815.2_17	chr7	+	931	2	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	21719	0	20531	0	3prime_fragment	FALSE	canonical	3	55	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGCTTGGTCAGTA	388	False	NA	10	True	ATTAAA	-10	NA	127398279	127399287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127398401_127398477
ENSMUSG00000108815.2_24	chr7	+	2809	8	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	11100	-2	9912	2	3prime_fragment	FALSE	canonical	3	26	junction_1	11.1849023606076	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGCTTGGTCAGTATC	NA	False	NA	12	True	ATTAAA	-12	NA	127387660	127399289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127387742_127390386_127390705_127394814_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
ENSMUSG00000108815.2_29	chr7	+	1734	1	NIC	ENSMUSG00000108815.2	novel	5188	19	NA	NA	2674	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCTTGTCTACCTTTTA	3345	False	NA	10	True	AATAAA	-11	NA	127401236	127402970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_127401200_127403000
ENSMUSG00000108815.2_3	chr7	+	3136	11	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	9840	-2	8652	2	3prime_fragment	FALSE	canonical	3	26	junction_4	12.2249744376011	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGCTTGGTCAGTATC	NA	False	NA	12	True	ATTAAA	-12	NA	127386400	127399289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127386475_127386670_127386759_127387368_127387527_127387653_127387742_127390386_127390705_127394814_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
ENSMUSG00000108815.2_6	chr7	+	3026	10	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	10144	0	8956	0	3prime_fragment	FALSE	canonical	3	26	junction_3	12.5353820232626	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGCTTGGTCAGTA	NA	False	NA	10	True	ATTAAA	-10	NA	127386704	127399287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127386759_127387368_127387527_127387653_127387742_127390386_127390705_127394814_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
ENSMUSG00000108815.2_7	chr7	+	2859	9	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	10921	0	9733	0	3prime_fragment	FALSE	canonical	3	26	junction_2	12.3028197987291	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGCTTGGTCAGTA	NA	False	NA	10	True	ATTAAA	-10	NA	127387481	127399287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127387527_127387653_127387742_127390386_127390705_127394814_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
ENSMUSG00000108815.2_8	chr7	+	2584	7	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	13970	-2	12782	2	3prime_fragment	FALSE	canonical	3	35	junction_1	7.97913946905722	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGCTTGGTCAGTATC	NA	False	NA	12	True	ATTAAA	-12	NA	127390530	127399289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127390705_127394814_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
ENSMUSG00000108815.2_9	chr7	+	2131	6	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	18533	-2	17345	2	3prime_fragment	FALSE	canonical	3	45	junction_1	4.73286382647969	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGCTTGGTCAGTATC	NA	False	NA	12	True	ATTAAA	-12	NA	127395093	127399289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
ENSMUSG00000108981.2_3	chrX	+	5084	15	NIC	ENSMUSG00000108981.2	novel	1272	9	NA	NA	12	0	combination_of_known_junctions	TRUE	canonical	2	10	junction_5	4.38748219369606	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACATAAATATTTTGTTTT	NA	False	NA	NA	False	AATAAA	-29	NA	160080774	160149248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_160080868_160083835_160084019_160090688_160090874_160106160_160106266_160107235_160107483_160109457_160109572_160114803_160114930_160116053_160116204_160117551_160117699_160123836_160123936_160136646_160136851_160137986_160138109_160140870_160141061_160143316_160143521_160146333
ENSMUSG00000108981.2_4	chrX	+	5022	15	FSM	ENSMUSG00000108981.2	ENSMUST00000207320.2	5010	15	-22	10	-10	-10	multi-exon	FALSE	canonical	1	1	junction_1	5.75210697865378	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATTCTCAACATAAAT	NA	False	NA	NA	False	AATAAA	-19	NA	160081352	160149238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_160081394_160083835_160084019_160090688_160090874_160106160_160106266_160107235_160107483_160109457_160109572_160114803_160114930_160116053_160116204_160117551_160117699_160123836_160123936_160136646_160136851_160137986_160138109_160140870_160141061_160143316_160143521_160146333
ENSMUSG00000108981.2_5	chrX	+	4853	14	NIC	ENSMUSG00000108981.2	novel	5010	15	NA	NA	-6	-70	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	6.68921236994143	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTTGCTTTTGATAAGT	NA	False	NA	NA	False	AATAAA	-12	NA	160081356	160149178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_160081394_160083835_160084019_160090688_160090874_160107235_160107483_160109457_160109572_160114803_160114930_160116053_160116204_160117551_160117699_160123836_160123936_160136646_160136851_160137986_160138109_160140870_160141061_160143316_160143521_160146333
ENSMUSG00000109015.2_0	chr7	-	2349	1	FSM	ENSMUSG00000109015.2	ENSMUST00000207600.2	2353	1	4	0	4	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTTGTGGATCAACTT	NA	False	NA	NA	False	NA	NA	NA	27869048	27866699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27866700_27869000
ENSMUSG00000109032.2_1	chr9	+	2449	4	NIC	ENSMUSG00000109032.2	novel	505	4	NA	NA	-41	-8	combination_of_known_splicesites	FALSE	canonical	3	39	junction_1	3.2659863237109	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCACAAGGGCTTTATGTG	NA	False	NA	8	True	AATAAA	-13	NA	75375856	75393955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_75375966_75388729_75388947_75390380_75390480_75391931
ENSMUSG00000109032.2_13	chr9	+	2573	5	NIC	ENSMUSG00000109032.2	novel	505	4	NA	NA	-32	-8	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	17.0953209972788	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCACAAGGGCTTTATGTG	NA	False	NA	8	True	AATAAA	-13	NA	75375865	75393955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_75375966_75386953_75387087_75388729_75388947_75390380_75390480_75391931
ENSMUSG00000109032.2_16	chr9	+	3203	11	NNC	ENSMUSG00000109032.2	novel	1137	9	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	14.3753260832581	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGGCTTTATGTGTGTG	NA	False	NA	12	True	AATAAA	-17	NA	75375886	75393959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_75375966_75377587_75377649_75379458_75379554_75380085_75380262_75380603_75380689_75383697_75383793_75385260_75385396_75386953_75387087_75388729_75388947_75390380_75390480_75391931
ENSMUSG00000109032.2_28	chr9	+	2266	3	ISM	ENSMUSG00000109032.2	ENSMUST00000208434.2	1137	9	9398	-1975	-1325	-4	3prime_fragment	FALSE	canonical	3	43	junction_2	2	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGGCTTTATGTGTGTG	NA	False	NA	12	True	AATAAA	-17	NA	75388807	75393959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_75388947_75390380_75390480_75391931
ENSMUSG00000109032.2_30	chr9	+	1625	1	ISM	ENSMUSG00000109032.2	ENSMUST00000209180.2	2184	3	2198	8	2198	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCACAAGGGCTTTATGTG	NA	False	NA	8	True	AATAAA	-13	NA	75392330	75393955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_+_75392300_75394000
ENSMUSG00000109061.2_1	chr8	+	6245	14	NIC	ENSMUSG00000109061.2	novel	2879	16	NA	NA	-37	-2	intron_retention	FALSE	canonical	3	6	junction_11	125.483773910386	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCTGGTGGAGTCAATA	NA	False	NA	NA	False	AATAAA	-14	NA	4288827	4301421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694_4299342_4299425_4299747_4300266_4300382_4300466
ENSMUSG00000109061.2_2	chr8	+	2275	17	NIC	ENSMUSG00000109061.2	novel	2879	16	NA	NA	-41	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	145.036148511328	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTCTGGTGGAGTCAAT	NA	False	NA	NA	False	AATAAA	-13	NA	4288823	4301420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694_4295826_4299204_4299342_4299425_4299747_4300266_4300382_4300466_4300626_4300848_4300922_4301292
ENSMUSG00000109176.2_12	chr7	+	3698	5	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	-47	-28	intron_retention	TRUE	non_canonical	0	0	junction_4	12.794041581924	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTTCAAAATTTTTTC	3107	False	NA	2	True	AATAAA	-13	NA	6980197	6994058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_6980472_6984231_6984357_6987994_6989202_6991881_6992745_6992829
ENSMUSG00000109176.2_19	chr7	+	1727	2	ISM	ENSMUSG00000109176.2	ENSMUST00000208781.2	2801	5	8896	539	4939	280	3prime_fragment	FALSE	canonical	3	33	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCCAGACAAACCTATGG	NA	False	NA	10	True	AATAAA	-19	NA	6989140	6993547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_6989202_6991881
ENSMUSG00000109176.2_2	chr7	+	2911	5	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	-125	-28	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	7.34846922834953	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTTCAAAATTTTTTC	3029	False	NA	2	True	AATAAA	-13	NA	6980119	6994058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_6980472_6984231_6984357_6987994_6988152_6989101_6989202_6991881
ENSMUSG00000109176.2_20	chr7	+	1475	1	Genic_Genomic	ENSMUSG00000109176.2	novel	NA	NA	NA	NA	8424	14	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGGTGGTGGACTCCT	NA	False	NA	44	True	ATTAAA	-15	NA	6992625	6994100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_+_6992600_6994100
ENSMUSG00000109176.2_3	chr7	+	3937	5	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	-147	-28	intron_retention	FALSE	canonical	2	12	junction_3	9.01041064547005	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTTCAAAATTTTTTC	3007	False	NA	2	True	AATAAA	-13	NA	6980097	6994058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_6980472_6984231_6984357_6985317_6985372_6987994_6989202_6991881
ENSMUSG00000109176.2_6	chr7	+	4098	6	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	-146	1084	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	8.7086164228309	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCAAGATGGTAGTCTGT	3008	False	NA	NA	False	NA	NA	NA	6980098	6995170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_6980472_6984231_6984357_6985317_6985372_6987994_6988152_6989101_6989202_6991881
ENSMUSG00000109224.2_0	chr7	+	1080	7	Fusion	ENSMUSG00000097320.9_ENSMUSG00000046056.16	novel	1276	6	NA	NA	41	1	multi-exon	FALSE	canonical	1	1	junction_4	6.02771377334171	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCGTGGCTCACTGTGCTT	567	False	NA	20	True	AATAAA	-22	NA	30429044	30455557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr7_+_30429280_30431838_30432187_30434128_30434194_30435240_30435388_30454233_30454306_30454426_30454472_30455389
ENSMUSG00000109244.2_0	chr7	+	3542	1	FSM	ENSMUSG00000109244.2	ENSMUST00000208302.2	4387	1	775	70	775	-70	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAAGAGTTGTCAGAGTA	NA	False	NA	NA	False	AATAAA	-10	NA	87961460	87965002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_87961500_87965000
ENSMUSG00000109249.2_0	chr7	-	5484	1	FSM	ENSMUSG00000109249.2	ENSMUST00000209012.2	3827	1	135	-1792	135	1792	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	66268761	66263277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_66263300_66268800
ENSMUSG00000109274.2_1	chr7	-	1594	1	FSM	ENSMUSG00000109274.2	ENSMUST00000207548.2	2773	1	627	552	627	-552	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGAAGTTGAGTCTGATT	NA	False	NA	NA	False	TTTAAA	-28	NA	5064421	5062827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_5062800_5064400
ENSMUSG00000109293.2_3	chr3	+	2191	9	NIC	ENSMUSG00000109293.2	novel	2285	16	NA	NA	4909	87	intron_retention	FALSE	canonical	1	2	junction_3	4.26468052730799	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACACAAATATGAATCTTAAA	2283	False	NA	NA	False	AATAAA	-15	NA	89274190	89284943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_89275242_89275397_89275556_89276011_89276177_89278006_89278108_89278839_89278971_89279954_89280083_89280529_89280624_89280731_89280888_89284736
ENSMUSG00000109324.3_0	chr7	-	1224	10	FSM	ENSMUSG00000109324.3	ENSMUST00000207370.2	2147	10	151	772	5	-3	multi-exon	FALSE	canonical	3	3261	junction_9	152.269092540837	2803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCACTTCTCGCCCTGGG	NA	False	NA	-33	True	AATAAA	-14	NA	44635765	44626184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
ENSMUSG00000109324.3_4	chr7	-	1278	11	FSM	ENSMUSG00000109324.3	ENSMUST00000107843.11	1508	11	227	3	5	-3	multi-exon	FALSE	canonical	3	222	junction_9	1333.46760365597	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCACTTCTCGCCCTGGG	NA	False	NA	-33	True	AATAAA	-14	NA	44635765	44626184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633503_44633558_44635706
ENSMUSG00000109336.2_1	chr7	-	4466	13	FSM	ENSMUSG00000109336.2	ENSMUST00000208199.2	4391	13	-102	27	-66	0	multi-exon	FALSE	canonical	3	219	junction_1	85.244582753914	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAACAAAAAC	6534	False	NA	-35	True	NA	NA	NA	28135718	28098973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_28101043_28101248_28101333_28103044_28103169_28103288_28103488_28104913_28105033_28105378_28105465_28105793_28106113_28106655_28106743_28106893_28107004_28107360_28107601_28113296_28113768_28122860_28123263_28135562
ENSMUSG00000109336.2_3	chr7	-	4672	12	NIC	ENSMUSG00000109336.2	novel	4391	13	NA	NA	-66	0	intron_retention	FALSE	canonical	3	429	junction_11	37.2212504841429	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAACAAAAAC	6534	False	NA	-35	True	NA	NA	NA	28135718	28098973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_28101333_28103044_28103169_28103288_28103488_28104913_28105033_28105378_28105465_28105793_28106113_28106655_28106743_28106893_28107004_28107360_28107601_28113296_28113768_28122860_28123263_28135562
ENSMUSG00000109336.2_6	chr7	-	1839	1	ISM	ENSMUSG00000109336.2	ENSMUST00000208199.2	4391	13	34804	27	2644	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAACAAAAAC	NA	False	NA	-35	True	NA	NA	NA	28100812	28098973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_28099000_28100800
ENSMUSG00000109350.2_0	chr7	-	595	4	FSM	ENSMUSG00000002992.18	ENSMUST00000003074.16	631	4	35	1	35	-1	multi-exon	FALSE	canonical	1	2	junction_1	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCGTGTGGCTTCTTTTCA	4282	False	NA	NA	False	AATAAA	-19	NA	19410754	19405504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_19405774_19407153_19407305_19407471_19407539_19410646
ENSMUSG00000109378.2_12	chr7	+	767	7	FSM	ENSMUSG00000078765.12	ENSMUST00000163654.8	781	7	10	4	-1	-1	multi-exon	FALSE	canonical	3	54	junction_6	203.636454387606	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	29	True	AATAAA	-17	NA	30262759	30264783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
ENSMUSG00000109378.2_2	chr7	+	834	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	193.245851659676	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	29	True	AATAAA	-17	NA	30262738	30264783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_30262775_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000109378.2_4	chr7	+	859	8	FSM	ENSMUSG00000078765.12	ENSMUST00000043273.16	884	8	18	7	0	-1	multi-exon	FALSE	canonical	3	411	junction_1	81.3154602866678	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	29	True	AATAAA	-17	NA	30262763	30264783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000109390.2_0	chr7	-	180	1	FSM	ENSMUSG00000109390.2	ENSMUST00000207577.2	3794	1	3609	5	3609	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTTAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	80560305	80560125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80560100_80560300
ENSMUSG00000109398.3_3	chr7	+	2596	5	FSM	ENSMUSG00000109398.3	ENSMUST00000207173.3	2950	5	3	351	3	-351	multi-exon	FALSE	canonical	3	12	junction_1	2.6809513236909	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAATCTGTGTGTTTGT	3015	False	NA	0	True	ATTAAA	-8	NA	6346760	6358604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_6346862_6349343_6349432_6351435_6351563_6352716_6352813_6356420
ENSMUSG00000109408.2_0	chr11	-	2895	4	FSM	ENSMUSG00000109408.2	ENSMUST00000208476.2	2853	4	-44	2	2	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATCTTATTTTTCTGT	9032	False	NA	NA	False	TTTAAA	-3	NA	119382059	119352028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_119354496_119355918_119356057_119379727_119379827_119381868
ENSMUSG00000109491.2_0	chr7	-	166	1	ISM	ENSMUSG00000109491.2	ENSMUST00000209101.2	1089	3	10464	27	10464	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAAAAAGG	6546	False	NA	NA	False	NA	NA	NA	44229584	44229418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44229400_44229600
ENSMUSG00000109493.2_3	chrX	+	1010	2	ISM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	1276	6	1276	-6	3prime_fragment	FALSE	canonical	3	755	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTAGTTTGGCCTCCTGT	2446	False	NA	1	True	AATAAA	-14	NA	7595953	7597297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chrX_+_7596173_7596506
ENSMUSG00000109509.2_0	chr7	-	177	1	FSM	ENSMUSG00000109509.2	ENSMUST00000208689.2	397	1	236	-16	236	16	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTCTCTTGTAAAAAAAAA	9871	False	NA	-25	True	AATAAA	-16	NA	30184286	30184109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_30184100_30184300
ENSMUSG00000109511.2_0	chr7	+	2418	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	296	8	1	0	multi-exon	FALSE	canonical	3	986	junction_1	0	2054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGACTTGCTGTGAGT	371	False	NA	13	True	AATAAA	-13	NA	44465807	44480228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_44465908_44477910
ENSMUSG00000109511.2_12	chr7	+	1869	1	ISM	ENSMUSG00000109511.2	ENSMUST00000208626.2	2708	2	12848	5	10499	0	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGACTTGCTGTGAGT	8	False	NA	13	True	AATAAA	-13	NA	44478359	44480228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_44478400_44480200
ENSMUSG00000109523.2_0	chr8	+	1263	2	FSM	ENSMUSG00000109523.2	ENSMUST00000207684.2	1349	2	72	14	72	-14	multi-exon	FALSE	canonical	3	32	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTAAGTTCCATTGCG	5190	False	NA	NA	False	AAAAAG	-19	NA	70782538	70784223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_70782927_70783348
ENSMUSG00000109561.2_0	chr13	+	5294	25	NNC	ENSMUSG00000109561.2	novel	5859	25	NA	NA	34	-246	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_13	3.8888640872225	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTTGCTTTTATTGTC	NA	False	NA	NA	False	AATAAA	-16	NA	96884813	97046301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_96884876_96884972_96885144_96888491_96888566_96889478_96889589_96910844_96910886_96916816_96916894_96928208_96928253_96935118_96935400_96935895_96935973_96940615_96940772_96957821_96957965_96962605_96962751_96967062_96967116_96967957_96969369_96970103_96970275_96988163_96988302_96989108_96989252_97002838_97003002_97005879_97005996_97009144_97009233_97010446_97010544_97014652_97015632_97029466_97029608_97040538_97040639_97045988
ENSMUSG00000109561.2_11	chr13	+	5284	25	NIC	ENSMUSG00000109561.2	novel	5859	25	NA	NA	40	-247	combination_of_known_splicesites	FALSE	canonical	2	5	junction_13	3.76017139089283	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTTTTGCTTTTATTGT	NA	False	NA	NA	False	AATAAA	-15	NA	96884819	97046300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_96884876_96884972_96885144_96888491_96888566_96889478_96889589_96910844_96910886_96916816_96916894_96928208_96928253_96935118_96935400_96935895_96935973_96940615_96940772_96957821_96957965_96962605_96962751_96967062_96967116_96967957_96969369_96970103_96970275_96988163_96988302_96989108_96989252_97002838_97003002_97005879_97005996_97009144_97009233_97010446_97010544_97014652_97015632_97029466_97029608_97040538_97040639_97045991
ENSMUSG00000109561.2_18	chr13	+	5330	24	NIC	ENSMUSG00000109561.2	novel	5859	25	NA	NA	90	-248	intron_retention	FALSE	canonical	2	5	junction_12	3.83053101591596	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTTTTGCTTTTATTG	NA	False	NA	NA	False	AATAAA	-14	NA	96884869	97046299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_96885144_96888491_96888566_96889478_96889589_96910844_96910886_96916816_96916894_96928208_96928253_96935118_96935400_96935895_96935973_96940615_96940772_96957821_96957965_96962605_96962751_96967062_96967116_96967957_96969369_96970103_96970275_96988163_96988302_96989108_96989252_97002838_97003002_97005879_97005996_97009144_97009233_97010446_97010544_97014652_97015632_97029466_97029608_97040538_97040639_97045991
ENSMUSG00000109561.2_8	chr13	+	5181	25	NIC	ENSMUSG00000109561.2	novel	5859	25	NA	NA	27	-246	combination_of_known_junctions	FALSE	canonical	1	2	junction_7	4.11615212708828	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTTGCTTTTATTGTC	NA	False	NA	NA	False	AATAAA	-16	NA	96884806	97046301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_96884876_96884972_96885144_96888491_96888566_96889478_96889589_96910844_96910886_96916816_96916894_96928208_96928253_96935235_96935400_96935895_96935973_96940615_96940772_96957821_96957965_96962605_96962751_96967062_96967116_96967957_96969369_96970103_96970275_96988163_96988302_96989108_96989252_97002838_97003002_97005879_97005996_97009144_97009233_97010446_97010544_97014652_97015632_97029466_97029608_97040538_97040639_97045991
ENSMUSG00000109561.2_9	chr13	+	5844	26	NIC	ENSMUSG00000109561.2	novel	5859	25	NA	NA	40	-248	combination_of_known_splicesites	FALSE	canonical	1	3	junction_8	4.02988833592198	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTTTTGCTTTTATTG	NA	False	NA	NA	False	AATAAA	-14	NA	96884819	97046299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_96884876_96884972_96885144_96888491_96888566_96889478_96889589_96910844_96910886_96916816_96916894_96928208_96928253_96932246_96932808_96935118_96935400_96935895_96935973_96940615_96940772_96957821_96957965_96962605_96962751_96967062_96967116_96967957_96969369_96970103_96970275_96988163_96988302_96989108_96989252_97002838_97003002_97005879_97005996_97009144_97009233_97010446_97010544_97014652_97015632_97029466_97029608_97040538_97040639_97045991
ENSMUSG00000109599.2_0	chr1	-	776	2	FSM	ENSMUSG00000109599.2	ENSMUST00000210323.2	1170	2	8	386	8	-386	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAACTAACTTTGAT	2504	False	NA	NA	False	NA	NA	NA	52152902	52147665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_52148419_52152879
ENSMUSG00000109610.2_0	chr8	-	268	1	FSM	ENSMUSG00000109610.2	ENSMUST00000210343.2	879	1	652	-41	652	41	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	AATAAA	-15	NA	61833769	61833501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_61833500_61833800
ENSMUSG00000109628.2_0	chr7	+	173	1	NIC	ENSMUSG00000109628.2	novel	731	5	NA	NA	1708	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAACTGA	NA	False	NA	NA	False	NA	NA	NA	140487703	140487876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_140487700_140487900
ENSMUSG00000109640.2_0	chr8	-	179	1	FSM	ENSMUSG00000109640.2	ENSMUST00000210389.2	3538	1	1713	1646	1713	-1646	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATGGCGGGAAC	NA	False	NA	NA	False	NA	NA	NA	26554367	26554188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26554200_26554400
ENSMUSG00000109649.2_0	chr14	-	3729	2	FSM	ENSMUSG00000109649.2	ENSMUST00000211339.2	676	2	19	-3072	19	3072	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTTGCATCTCCAAGTG	NA	False	NA	NA	False	AATAAA	-30	NA	14512466	14506064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_14509256_14511928
ENSMUSG00000109658.2_0	chr8	-	130	1	FSM	ENSMUSG00000109658.2	ENSMUST00000210267.2	151	1	58	-37	58	37	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATCTACCAAGAAGA	NA	False	NA	NA	False	AATAAA	-14	NA	41136628	41136498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_41136500_41136600
ENSMUSG00000109674.2_0	chr8	+	2866	1	Genic_Genomic	ENSMUSG00000109674.2	novel	NA	NA	NA	NA	-1431	-9632	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAATGCCTCTGAAGTT	NA	False	NA	NA	False	CATAAA	-15	NA	27717282	27720148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_27717300_27720100
ENSMUSG00000109714.2_4	chr8	+	175	1	ISM	ENSMUSG00000109714.2	ENSMUST00000210105.2	2329	3	31884	15	31884	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGACGT	NA	False	NA	NA	False	NA	NA	NA	36224481	36224656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_36224500_36224700
ENSMUSG00000109771.2_21	chr5	-	417	3	ISM	ENSMUSG00000109771.2	ENSMUST00000210052.2	3523	4	0	4209	0	-1071	5prime_fragment	FALSE	canonical	3	35	junction_2	13	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACCTCAATGTCAGGTG	NA	False	NA	NA	False	NA	NA	NA	110242286	110228210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110228411_110228603_110228731_110242196
ENSMUSG00000109771.2_6	chr5	-	2083	1	ISM	ENSMUSG00000109771.2	ENSMUST00000209865.2	3457	3	2667	3	2667	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATTCAAAGTGTTCCTTT	4802	False	NA	-6	True	AATAAA	-11	NA	110226087	110224004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_110224000_110226100
ENSMUSG00000109771.2_8	chr5	-	3537	4	FSM	ENSMUSG00000109771.2	ENSMUST00000210052.2	3523	4	-17	3	-17	-3	multi-exon	FALSE	canonical	3	35	junction_3	10.7082522694727	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATTCAAAGTGTTCCTTT	NA	False	NA	-6	True	AATAAA	-11	NA	110242303	110224004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_110227247_110228349_110228411_110228603_110228731_110242196
ENSMUSG00000109780.2_0	chr2	+	1885	3	FSM	ENSMUSG00000109780.2	ENSMUST00000209874.2	1805	3	-79	-1	-79	1	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTCCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	160951251	160956779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_160951749_160954023_160954240_160955607
ENSMUSG00000109781.2_0	chr7	-	175	1	FSM	ENSMUSG00000109781.2	ENSMUST00000209624.2	1229	1	1032	22	1032	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATGTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16140876	16140701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_16140700_16140900
ENSMUSG00000109805.2_0	chr8	-	2222	3	FSM	ENSMUSG00000109805.2	ENSMUST00000148141.3	342	3	-13	-1867	-13	1867	multi-exon	FALSE	canonical	0	0	junction_1	214.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTTTTTGTTTCTTGTT	NA	False	NA	NA	False	AATAAA	-13	NA	65489761	65465640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_65467553_65488316_65488407_65489541
ENSMUSG00000109814.2_0	chr7	+	2559	3	FSM	ENSMUSG00000109814.2	ENSMUST00000211504.2	662	3	-33	-1864	-33	-2	multi-exon	FALSE	canonical	2	5	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGCTTTTGGTTATGGT	1703	False	NA	NA	False	NA	NA	NA	122630604	122667526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_122630774_122660895_122661022_122665262
ENSMUSG00000109829.2_0	chr11	+	4207	1	FSM	ENSMUSG00000109829.2	ENSMUST00000210265.2	4269	1	53	9	53	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGAGAACTATGCCTCGG	NA	False	NA	NA	False	NA	NA	NA	61298896	61303103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_61298900_61303100
ENSMUSG00000109865.2_1	chr2	-	1745	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	43	7	-28	-7	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	1069	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAGTACTGGAGTCTTTG	3985	False	NA	-12	True	ATTAAA	-13	NA	3513808	3489893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
ENSMUSG00000109901.3_0	chr18	+	2398	1	FSM	ENSMUSG00000109901.3	ENSMUST00000210564.3	2524	1	40	86	40	-86	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCTTAAACCTTCTTAAAA	NA	False	NA	-1	True	ATTAAA	-12	NA	67338476	67340874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_67338500_67340900
ENSMUSG00000109941.2_0	chr8	+	1253	1	FSM	ENSMUSG00000109941.2	ENSMUST00000210390.2	1326	1	10	63	10	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	339	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATACATCTGTTGTGTTT	NA	False	NA	7	True	AGTAAA	-24	NA	111782980	111784233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_111783000_111784200
ENSMUSG00000109946.2_1	chr2	+	1696	1	FSM	ENSMUSG00000109946.2	ENSMUST00000209765.2	1898	1	197	5	18	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCTTCCCTTTCTCATTT	NA	False	NA	-2	True	AATAAA	-10	NA	27332532	27334228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_27332500_27334200
ENSMUSG00000109946.2_2	chr2	+	1571	2	NNC	ENSMUSG00000109946.2	novel	509	2	NA	NA	27	-8	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTCTTCCCTTTCTCA	NA	False	NA	-5	True	AATAAA	-7	NA	27332541	27334225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_27332827_27332939
ENSMUSG00000109957.2_0	chr8	+	3819	2	ISM	ENSMUSG00000109957.2_ENSMUSG00000049577.16	ENSMUST00000210581.2	252	3	-3515	420	1025	-420	5prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTTAGGATATTTCTCT	NA	False	NA	NA	False	NA	NA	NA	123062394	123069419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_123065995_123069200
ENSMUSG00000109969.2_1	chr7	+	1822	4	NNC	ENSMUSG00000109969.2	novel	2277	4	NA	NA	-23	-430	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	6.12825877028341	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTTTATGTTTTGTTTT	NA	False	NA	NA	False	AGTAAA	-41	NA	11343211	11347609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_11343294_11343947_11344419_11346256_11346417_11346500
ENSMUSG00000109975.2_0	chr12	+	471	5	NIC	ENSMUSG00000109975.2	novel	363	4	NA	NA	-4	6	combination_of_known_junctions	FALSE	canonical	3	112	junction_2	32.0507410210747	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAAGGCGTTTTTTTTTTTT	6096	False	NA	NA	False	ACTAAA	-24	NA	21593303	21604528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_21593347_21595309_21595401_21599867_21599956_21604009_21604108_21604377
ENSMUSG00000110013.2_0	chr8	+	2250	2	ISM	ENSMUSG00000110013.2	ENSMUST00000210977.2	763	4	2	42644	2	-42644	5prime_fragment	FALSE	canonical	3	54	junction_1	0	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGACCGTTTCTCGTGA	NA	False	NA	18	True	NA	NA	NA	52809647	52813730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_52809842_52811674
ENSMUSG00000110013.2_1	chr8	+	1937	2	NNC	ENSMUSG00000110013.2	novel	763	4	NA	NA	1	-42830	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGTGGTGTTGCATCTT	NA	False	NA	16	True	NA	NA	NA	52809646	52813544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_52809842_52811802
ENSMUSG00000110062.2_0	chr7	-	3293	1	FSM	ENSMUSG00000110062.2	ENSMUST00000209731.2	2669	1	292	-916	292	916	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATCCCCTTTAC	4458	False	NA	NA	False	ATTAAA	-12	NA	110368260	110364967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_110365000_110368300
ENSMUSG00000110097.2_2	chr7	-	1846	4	NNC	ENSMUSG00000110097.2	novel	2279	4	NA	NA	-21	-423	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	5.09901951359278	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTTGTTTTGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	10533005	10528591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_10529709_10529792_10529953_10531798_10532271_10532908
ENSMUSG00000110097.2_3	chr7	-	1876	4	FSM	ENSMUSG00000110097.2	ENSMUST00000210573.2	2279	4	-21	424	-21	-424	multi-exon	FALSE	canonical	2	8	junction_3	3.29983164553722	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTTTGTTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	10533005	10528592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_10529709_10529792_10529953_10531798_10532271_10532877
ENSMUSG00000110120.2_0	chr8	-	169	2	Genic_Genomic	ENSMUSG00000110120.2	novel	1465	1	NA	NA	-3319	-427	multi-exon	TRUE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26625989	26621632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_26621791_26625978
ENSMUSG00000110123.2_0	chr13	+	3543	10	FSM	ENSMUSG00000110123.2	ENSMUST00000209949.2	915	10	6	-2634	6	2634	multi-exon	TRUE	canonical	0	0	junction_1	25.9572297785757	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATCTTTTGTTTCTTTGTT	7838	False	NA	NA	False	ATTAAA	-14	NA	13497954	13527646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_13497977_13505226_13505348_13505450_13505498_13510200_13510228_13517810_13517904_13518036_13518284_13519905_13519976_13520480_13520568_13522598_13522733_13524951
ENSMUSG00000110123.2_1	chr13	+	3556	11	NNC	ENSMUSG00000110123.2	novel	915	10	NA	NA	6	2635	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	25.4795996828836	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTGTTTCTTTGTTT	7838	False	NA	NA	False	ATTAAA	-15	NA	13497954	13527647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_13497977_13505226_13505348_13505450_13505498_13507966_13507979_13510200_13510228_13517810_13517904_13518036_13518284_13519905_13519976_13520480_13520568_13522598_13522733_13524951
ENSMUSG00000110123.2_10	chr13	+	2964	2	ISM	ENSMUSG00000110123.2	ENSMUST00000209949.2	915	10	24516	-2635	24516	2635	3prime_fragment	FALSE	canonical	3	59	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTGTTTCTTTGTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	13522464	13527647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13522733_13524951
ENSMUSG00000110123.2_4	chr13	+	3517	9	NIC	ENSMUSG00000110123.2	novel	915	10	NA	NA	6	2635	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	25.4509331852488	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTGTTTCTTTGTTT	7838	False	NA	NA	False	ATTAAA	-15	NA	13497954	13527647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_13497977_13505226_13505348_13505450_13505498_13517810_13517904_13518036_13518284_13519905_13519976_13520480_13520568_13522598_13522733_13524951
ENSMUSG00000110123.2_6	chr13	+	3498	9	ISM	ENSMUSG00000110123.2	ENSMUST00000209949.2	915	10	7300	-2633	7300	2633	3prime_fragment	FALSE	canonical	0	0	junction_2	24.4015880630749	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAATCTTTTGTTTCTTTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	13505248	13527645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13505348_13505450_13505498_13510200_13510228_13517810_13517904_13518036_13518284_13519905_13519976_13520480_13520568_13522598_13522733_13524951
ENSMUSG00000110123.2_8	chr13	+	4666	7	ISM	ENSMUSG00000110123.2	ENSMUST00000209949.2	915	10	10938	-2633	10938	2633	3prime_fragment	FALSE	canonical	2	6	junction_1	22.1032928668005	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAATCTTTTGTTTCTTTGT	NA	False	NA	NA	False	ATTAAA	-13	NA	13508886	13527645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_13510228_13517810_13517904_13518036_13518284_13519905_13519976_13520480_13520568_13522598_13522733_13524951
ENSMUSG00000110126.2_0	chr7	+	285	1	FSM	ENSMUSG00000110126.2	ENSMUST00000211473.2	1607	1	1453	-131	1453	131	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGACTATATC	NA	False	NA	NA	False	AGTAAA	-14	NA	136414090	136414375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_136414100_136414400
ENSMUSG00000110136.2_0	chr7	-	1443	4	FSM	ENSMUSG00000025484.10	ENSMUST00000026557.10	2268	4	809	16	-16	-16	multi-exon	FALSE	canonical	3	105	junction_2	2.62466929133727	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGAAGTTCCGTGCCC	NA	False	NA	-26	True	CATAAA	-15	NA	140436213	140433322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140434537_140434677_140434735_140434986_140435079_140436133
ENSMUSG00000110136.2_3	chr7	-	1567	3	ISM	ENSMUSG00000025484.10	ENSMUST00000210710.2	489	4	1291	-1378	-2	-19	3prime_fragment	FALSE	canonical	3	105	junction_1	3	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAGCTATGAAGTTCCGTG	NA	False	NA	-29	True	CATAAA	-12	NA	140436199	140433325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_140434735_140434986_140435079_140436133
ENSMUSG00000110156.3_0	chr19	+	1866	1	FSM	ENSMUSG00000110156.3	ENSMUST00000235359.2	1843	1	-31	8	3	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCTAAGCTCACACTA	9358	False	NA	-5	True	NA	NA	NA	5962983	5964849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5963000_5964800
ENSMUSG00000110156.3_2	chr19	+	747	2	FSM	ENSMUSG00000110156.3	ENSMUST00000209642.2	647	2	136	-236	5	0	multi-exon	FALSE	canonical	3	13	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTCACACTACACAGCGG	9360	False	NA	3	True	NA	NA	NA	5962985	5964857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5963101_5964225
ENSMUSG00000110185.3_0	chr18	+	3000	1	FSM	ENSMUSG00000110185.3	ENSMUST00000210490.3	2839	1	-193	32	-193	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGTTTATTTTTCATG	NA	False	NA	NA	False	AATAAA	-14	NA	36431538	36434538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36431500_36434500
ENSMUSG00000110190.2_3	chr7	+	1829	4	NNC	ENSMUSG00000110190.2	novel	2277	4	NA	NA	-21	-421	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	3.29983164553722	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTGTTTTGTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	11248215	11252617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_11248296_11248948_11249421_11251256_11251417_11251500
ENSMUSG00000110195.2_0	chr7	+	4019	30	ISM	ENSMUSG00000110195.2	ENSMUST00000209537.2	4100	31	751	3	-45	0	3prime_fragment	TRUE	canonical	0	0	junction_1	2.53630007564597	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAACCCTCCCACAGGAGG	7599	False	NA	1	True	AATAAA	-14	NA	101100477	101162021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101100676_101130577_101130668_101133748_101133838_101143777_101143888_101144843_101144900_101149594_101149655_101150183_101150326_101150816_101150870_101151060_101151136_101151220_101151263_101151740_101151810_101152018_101152150_101152505_101152618_101153030_101153071_101153178_101153243_101153584_101153658_101153777_101153956_101154163_101154277_101155125_101155204_101156302_101156426_101156883_101156955_101157213_101157337_101157648_101157737_101157898_101157947_101158923_101158999_101159141_101159242_101159512_101159626_101160135_101160175_101160320_101160428_101160662
ENSMUSG00000110195.2_1	chr7	+	3306	23	ISM	ENSMUSG00000110195.2	ENSMUST00000209537.2	4100	31	51057	4	-40	-1	3prime_fragment	FALSE	canonical	0	0	junction_17	2.67873474511956	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAACCCTCCCACAGGAG	2625	False	NA	0	True	AATAAA	-13	NA	101150783	101162020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101150870_101151060_101151136_101151220_101151263_101151740_101151810_101152018_101152150_101152505_101152618_101153030_101153071_101153178_101153243_101153584_101153658_101153777_101153956_101154163_101154277_101155125_101155204_101156302_101156426_101156883_101156955_101157213_101157337_101157648_101157737_101157898_101157947_101158923_101158999_101159141_101159242_101159512_101159626_101160135_101160175_101160320_101160428_101160662
ENSMUSG00000110195.2_3	chr7	+	3365	23	ISM	ENSMUSG00000110195.2	ENSMUST00000163751.10	4218	31	79840	13	-86	0	3prime_fragment	FALSE	canonical	0	0	junction_5	2.6921987081747	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAACCCTCCCACAGGAGG	2579	False	NA	1	True	AATAAA	-14	NA	101150737	101162021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_101150870_101151060_101151136_101151220_101151263_101151740_101151810_101152018_101152150_101152493_101152618_101153030_101153071_101153178_101153243_101153584_101153658_101153777_101153956_101154163_101154277_101155125_101155204_101156302_101156426_101156883_101156955_101157213_101157337_101157648_101157737_101157898_101157947_101158923_101158999_101159141_101159242_101159512_101159626_101160135_101160175_101160320_101160428_101160662
ENSMUSG00000110206.2_2	chr7	-	919	5	ISM	ENSMUSG00000110206.2	ENSMUST00000211429.2	1358	8	1771	1	431	0	3prime_fragment	FALSE	canonical	1	2	junction_1	4.41588043316392	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGCTGCGTGCCTGGAA	NA	False	NA	NA	False	AATAAA	-15	NA	44783938	44780612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44780991_44781492_44781562_44781651_44781837_44783305_44783451_44783796
ENSMUSG00000110206.2_6	chr7	-	787	5	ISM	ENSMUSG00000110206.2	ENSMUST00000146760.7	1075	9	1914	1	427	-1	3prime_fragment	FALSE	canonical	3	5	junction_3	3.53553390593274	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGCTGCGTGCCTGGA	NA	False	NA	NA	False	AATAAA	-14	NA	44783942	44780613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_44780856_44781492_44781562_44781651_44781837_44783305_44783451_44783796
ENSMUSG00000110212.2_0	chr8	-	1293	3	FSM	ENSMUSG00000110212.2	ENSMUST00000211762.2	1425	3	12	120	12	-120	multi-exon	FALSE	canonical	1	1	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAAACAACGCCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	91489212	91486210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_91487378_91488284_91488358_91489159
ENSMUSG00000110221.2_0	chr7	-	3169	2	FSM	ENSMUSG00000110221.2	ENSMUST00000210663.2	1279	2	-139	-1751	-139	1751	multi-exon	TRUE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAGAAAAAAAAAGGAAA	2757	False	NA	NA	False	NA	NA	NA	4909654	4899697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_4902496_4909283
ENSMUSG00000110231.2_1	chr8	-	963	3	FSM	ENSMUSG00000110231.2	ENSMUST00000209210.2	936	3	-25	-2	-25	2	multi-exon	FALSE	canonical	3	13	junction_1	4	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAGAACTGACTCTTCT	NA	False	NA	NA	False	AGTAAA	-19	NA	45618281	45613528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_45614092_45614492_45614559_45617947
ENSMUSG00000110234.3_5	chr7	+	3607	8	ISM	ENSMUSG00000110234.3	ENSMUST00000142363.8	1972	9	-9	0	1	0	intron_retention	FALSE	canonical	1	3	junction_3	167.447097951099	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGATTTTCACTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	105289759	105308249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_105289830_105289968_105290065_105290234_105290436_105300278_105300479_105300708_105301514_105304828_105304991_105306093_105306298_105306380
ENSMUSG00000110277.3_0	chr18	+	1972	4	FSM	ENSMUSG00000110277.3	ENSMUST00000211710.2	2003	4	35	-4	-13	-2	multi-exon	FALSE	canonical	3	89	junction_2	1.63299316185545	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTGTCTTGGTCATAG	NA	False	NA	7	True	NA	NA	NA	90597935	90610650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_90598024_90607079_90607207_90607397_90607459_90608954
ENSMUSG00000110277.3_1	chr18	+	1918	3	FSM	ENSMUSG00000110277.3	ENSMUST00000209969.3	1929	3	9	2	9	-2	multi-exon	FALSE	canonical	0	0	junction_2	46.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTGTCTTGGTCATAG	NA	False	NA	7	True	NA	NA	NA	90597928	90610650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_90598024_90607079_90607207_90608954
ENSMUSG00000110277.3_3	chr18	+	1849	3	ISM	ENSMUSG00000110277.3	ENSMUST00000210766.2	578	4	3582	-1449	3582	2	3prime_fragment	FALSE	canonical	3	89	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGTGTTGTCTTGGTCAT	NA	False	NA	5	True	NA	NA	NA	90607112	90610648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_90607207_90607397_90607459_90608954
ENSMUSG00000110277.3_4	chr18	+	1018	1	Genic_Genomic	ENSMUSG00000110277.3	novel	NA	NA	NA	NA	6108	4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGGTCATAGTATCTT	NA	False	NA	13	True	NA	NA	NA	90609638	90610656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_+_90609600_90610700
ENSMUSG00000110316.2_0	chr7	-	1359	1	FSM	ENSMUSG00000110316.2	ENSMUST00000211086.2	1330	1	-56	27	-56	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAATAAACAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	46162260	46160901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_46160900_46162300
ENSMUSG00000110317.2_0	chr8	-	3972	1	FSM	ENSMUSG00000110317.2	ENSMUST00000209414.2	3592	1	-382	2	-382	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTTGTGCCTCATCTCA	NA	False	NA	NA	False	AATAAA	-26	NA	26645889	26641917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_26641900_26645900
ENSMUSG00000110331.2_0	chr8	-	478	1	FSM	ENSMUSG00000110331.2	ENSMUST00000209275.2	551	1	280	-207	280	207	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CACCTGTAAAAAAAAAAAAA	NA	False	NA	-21	True	ATTAAA	-17	NA	29776729	29776251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_29776300_29776700
ENSMUSG00000110344.2_0	chr11	+	764	2	ISM	ENSMUSG00000110344.2	ENSMUST00000134929.8	2031	4	61772	1	61772	-1	3prime_fragment	FALSE	canonical	3	25	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAGCAATCTTTTTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	90140281	90142080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr11_+_90140562_90141596
ENSMUSG00000110357.2_0	chr7	-	3193	2	FSM	ENSMUSG00000110357.2	ENSMUST00000211533.2	1542	2	-13	-1638	-13	1638	multi-exon	FALSE	canonical	3	16	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAACCATAGCTTCT	NA	False	NA	NA	False	AAAACA	-33	NA	45288202	45283465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_45286563_45288106
ENSMUSG00000110393.3_13	chr13	+	2399	1	Genic_Genomic	ENSMUSG00000110393.3	novel	NA	NA	NA	NA	7443	1822	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAGGAAGTCTCAGAAAA	NA	False	NA	NA	False	NA	NA	NA	65397391	65399790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_65397400_65399800
ENSMUSG00000110393.3_2	chr13	+	2841	3	FSM	ENSMUSG00000110393.3	ENSMUST00000210653.2	1489	3	-257	-1095	-257	8	multi-exon	FALSE	canonical	3	28	junction_1	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTTTGTTTGCTTTAA	NA	False	NA	NA	False	NA	NA	NA	65389309	65397976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_65389830_65395454_65395582_65395782
ENSMUSG00000110393.3_5	chr13	+	1871	4	FSM	ENSMUSG00000110393.3	ENSMUST00000209951.2	1597	4	-238	-36	-238	3	multi-exon	FALSE	canonical	3	28	junction_1	3.55902608401044	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGTTTGTTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	65389328	65397971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_65389830_65395454_65395582_65395782_65395844_65396789
ENSMUSG00000110393.3_8	chr13	+	5636	6	NNC	ENSMUSG00000110393.3	novel	1597	4	NA	NA	-236	4474	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	15.4350251052598	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTTCTAATTCATATAAC	NA	False	NA	7	True	NA	NA	NA	65389330	65402442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_65389830_65395454_65395582_65395782_65395844_65396789_65396883_65397381_65400951_65401155
ENSMUSG00000110393.3_9	chr13	+	6135	5	NNC	ENSMUSG00000110393.3	novel	1597	4	NA	NA	-236	4474	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	13.7727085208393	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTTCTAATTCATATAAC	NA	False	NA	7	True	NA	NA	NA	65389330	65402442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_65389830_65395454_65395582_65395782_65395844_65396789_65400951_65401155
ENSMUSG00000110424.2_0	chr7	-	2955	1	FSM	ENSMUSG00000110424.2	ENSMUST00000210340.2	3434	1	-19	498	-16	-498	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110721907	110718952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_110719000_110721900
ENSMUSG00000110440.2_0	chr8	+	2655	2	FSM	ENSMUSG00000110440.2	ENSMUST00000212728.2	1097	2	37	-1595	37	1595	multi-exon	FALSE	canonical	1	3	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTATATTTATATATATA	NA	False	NA	NA	False	NA	NA	NA	123597324	123629791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123597547_123627358
ENSMUSG00000110444.3_1	chr8	-	5654	4	FSM	ENSMUSG00000110444.3	ENSMUST00000072427.7	7668	4	-10	2024	-4	-2024	multi-exon	FALSE	canonical	3	36	junction_3	3.85861230093008	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAACTTCGCTTACCTCA	NA	False	NA	NA	False	AATGAA	-17	NA	69848184	69821185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_69826560_69827709_69827771_69827957_69828085_69848092
ENSMUSG00000110444.3_2	chr8	-	5076	5	FSM	ENSMUSG00000110444.3	ENSMUST00000213012.2	7778	5	-16	2718	1	-2718	multi-exon	FALSE	canonical	2	5	junction_3	16.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAACTGATGTGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69848190	69821879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_69826560_69827709_69827771_69827957_69828085_69829137_69829248_69848092
ENSMUSG00000110444.3_4	chr8	-	2796	1	ISM	ENSMUSG00000110444.3	ENSMUST00000072427.7	7668	4	24201	2016	2062	-2016	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCTTACCTCATCATTTGA	NA	False	NA	NA	False	AATGAA	-25	NA	69823973	69821177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_69821200_69824000
ENSMUSG00000110469.2_0	chr8	-	293	1	FSM	ENSMUSG00000110469.2	ENSMUST00000212864.2	1250	1	959	-2	959	2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-14	NA	76132258	76131965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_76132000_76132300
ENSMUSG00000110489.2_0	chr8	-	340	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212289.2	338	3	-13	11	0	-11	multi-exon	FALSE	canonical	0	0	junction_1	187	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTCTTTAAAGTTCAAATA	NA	False	NA	-15	True	NA	NA	NA	96544319	96535190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_96535388_96539051_96539129_96544253
ENSMUSG00000110489.2_2	chr8	-	303	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212957.2	153	3	0	-150	0	-11	multi-exon	FALSE	canonical	3	213	junction_1	80.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTCTTTAAAGTTCAAATA	NA	False	NA	-15	True	NA	NA	NA	96544319	96535190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_96535388_96539088_96539129_96544253
ENSMUSG00000110516.2_0	chr8	-	1778	1	FSM	ENSMUSG00000110516.2	ENSMUST00000212448.2	1006	1	-790	18	-790	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	178	False	NA	NA	False	NA	NA	NA	95818094	95816316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_95816300_95818100
ENSMUSG00000110537.2_0	chr8	+	1109	2	FSM	ENSMUSG00000110537.2	ENSMUST00000212490.2	1115	2	3	3	3	-3	multi-exon	FALSE	canonical	2	12	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGACAACATGGTGGTGTG	3331	False	NA	-2	True	NA	NA	NA	123899586	123905501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_123899783_123904588
ENSMUSG00000110547.2_0	chr8	+	159	1	ISM	ENSMUSG00000110547.2	ENSMUST00000212751.2	1895	2	3730	459	3730	-459	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124626741	124626900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_124626700_124626900
ENSMUSG00000110605.2_1	chr8	+	631	5	NIC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	-40	-758	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	15.1657508881031	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATTTGAGCAAACTTTGT	NA	False	NA	NA	False	NA	NA	NA	129990081	130008567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_129990206_129993965_129994181_130007503_130007631_130007817_130007879_130008463
ENSMUSG00000110605.2_13	chr8	+	3808	3	FSM	ENSMUSG00000110605.2	ENSMUST00000212145.2	3767	3	-46	5	-39	-5	multi-exon	FALSE	canonical	1	2	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGACAGTCTCTCGTGA	NA	False	NA	NA	False	NA	NA	NA	129990082	129998344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_129990206_129993965_129994181_129994874
ENSMUSG00000110605.2_2	chr8	+	2935	4	NNC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	-29	2265	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	15.5777619273972	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTTGCCTTGGTCGTGG	NA	False	NA	NA	False	NA	NA	NA	129990092	130011590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_129990206_130007503_130007631_130007817_130007879_130008956
ENSMUSG00000110605.2_5	chr8	+	3154	5	NNC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	-30	2268	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	15.1657508881031	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGTCGTGGTAT	NA	False	NA	NA	False	NA	NA	NA	129990091	130011593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_129990206_129993965_129994181_130007503_130007631_130007817_130007879_130008956
ENSMUSG00000110605.2_6	chr8	+	749	4	FSM	ENSMUSG00000110605.2	ENSMUST00000212180.2	1134	4	-27	412	-27	-412	multi-exon	FALSE	canonical	3	25	junction_3	15.5777619273972	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATGTGGTAAAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	129990094	130008913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_129990206_130007503_130007631_130007817_130007879_130008463
ENSMUSG00000110605.2_7	chr8	+	4002	3	ISM	ENSMUSG00000110605.2	ENSMUST00000212180.2	1134	4	-18	-2265	-18	2265	intron_retention	FALSE	canonical	3	47	junction_2	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTTGCCTTGGTCGTGG	NA	False	NA	NA	False	NA	NA	NA	129990103	130011590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_129990206_130007503_130007631_130007817
ENSMUSG00000110605.2_9	chr8	+	3197	1	ISM	ENSMUSG00000110605.2	ENSMUST00000212145.2	3767	3	5022	2	5022	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACAGTCTCTCGTGATTC	NA	False	NA	NA	False	NA	NA	NA	129995150	129998347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_129995200_129998300
ENSMUSG00000110622.2_0	chr8	+	686	1	ISM	ENSMUSG00000110622.2	ENSMUST00000212436.2	4584	4	13504	4	13504	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTCTGGTCATATATCT	NA	False	NA	NA	False	AATAAA	-13	NA	71169609	71170295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_+_71169600_71170300
ENSMUSG00000110661.2_0	chr8	-	187	1	ISM	ENSMUSG00000110661.2	ENSMUST00000211921.2	4031	2	2685	2206	2685	-2206	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTTGCACATACACACG	NA	False	NA	NA	False	TATAAA	-4	NA	96557618	96557431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_96557400_96557600
ENSMUSG00000110679.2_0	chr8	+	553	1	FSM	ENSMUSG00000110679.2	ENSMUST00000212707.2	642	1	109	-20	109	20	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTATACCCTACCAAATCG	NA	False	NA	NA	False	NA	NA	NA	94949729	94950282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_94949700_94950300
ENSMUSG00000110686.2_0	chr8	-	886	1	FSM	ENSMUSG00000110686.2	ENSMUST00000212546.2	880	1	67	-73	67	73	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGCGTCCTCCTCCAAG	NA	False	NA	NA	False	NA	NA	NA	106312765	106311879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106311900_106312800
ENSMUSG00000110712.2_1	chr1	+	1215	2	FSM	ENSMUSG00000110712.2	ENSMUST00000212057.2	1238	2	0	23	0	-23	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAATATGTTTTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	72680346	72682099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_72681432_72681969
ENSMUSG00000110803.2_1	chr9	-	2555	3	NNC	ENSMUSG00000110803.2	novel	1387	4	NA	NA	43	-105999	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	0.5	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATACAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	59848317	59839538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_59841973_59847284_59847361_59848272
ENSMUSG00000110834.2_0	chr9	-	1587	3	NNC	ENSMUSG00000110834.2	novel	461	4	NA	NA	10642	1819	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	36.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	124034127	124031168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_-_124032567_124033755_124033817_124033999
ENSMUSG00000110834.2_2	chr9	-	509	4	FSM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	-46	-2	-46	2	multi-exon	FALSE	canonical	3	27	junction_1	43.70608907489	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCCTATGAGTACTGG	NA	False	NA	NA	False	NA	NA	NA	124044815	124032985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_124033196_124033755_124033817_124033999_124034127_124044704
ENSMUSG00000110834.2_3	chr9	-	318	2	ISM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	10642	639	10642	-639	internal_fragment	FALSE	canonical	3	133	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATCCATGTACCTCAAT	NA	False	NA	NA	False	NA	NA	NA	124034127	124033626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_124033817_124033999
ENSMUSG00000110834.2_4	chr9	-	462	3	ISM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	-68	627	-68	-627	5prime_fragment	FALSE	canonical	3	93	junction_2	20	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCAATGTCAGGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	124044837	124033614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_124033817_124033999_124034127_124044704
ENSMUSG00000110834.2_5	chr9	-	406	3	ISM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	10642	-9	10642	9	3prime_fragment	FALSE	canonical	3	27	junction_1	53	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGAGTACTGGAATGTGA	NA	False	NA	NA	False	NA	NA	NA	124034127	124032978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_124033196_124033755_124033817_124033999
ENSMUSG00000110841.2_0	chr10	+	732	1	FSM	ENSMUSG00000110841.2	ENSMUST00000217344.2	782	1	23	27	23	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATGTGAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-7	NA	45751423	45752155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_45751400_45752200
ENSMUSG00000110866.2_1	chr9	-	2379	1	ISM	ENSMUSG00000110866.2	ENSMUST00000216055.2	3205	3	1958	1	1958	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCAAGGTGTTGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	25768990	25766611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr9_-_25766600_25769000
ENSMUSG00000110869.2_0	chr10	-	1716	1	FSM	ENSMUSG00000110869.2	ENSMUST00000214203.2	1790	1	69	5	69	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGATAAAAGCAAAAAAA	3480	False	NA	NA	False	NA	NA	NA	93871594	93869878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_93869900_93871600
ENSMUSG00000110915.2_1	chr9	-	145	1	NIC	ENSMUSG00000110915.2	novel	416	3	NA	NA	45	-1599	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAACAAAACTAGGGCCTG	7530	False	NA	NA	False	NA	NA	NA	21280435	21280290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_21280300_21280400
ENSMUSG00000110945.2_0	chr9	-	1538	1	FSM	ENSMUSG00000110945.2	ENSMUST00000217077.2	2578	1	-11	1051	-11	-1051	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGAGAGATTGCTTAGC	8750	False	NA	NA	False	AATAAA	-17	NA	122850648	122849110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_122849100_122850600
ENSMUSG00000110949.2_0	chr19	+	1124	3	FSM	ENSMUSG00000110949.2	ENSMUST00000122924.2	1082	3	-42	0	9	0	multi-exon	FALSE	canonical	3	76	junction_1	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTCTGGCATCTTCCGT	3522	False	NA	7	True	ATTAAA	-16	NA	4050588	4052101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4051329_4051627_4051706_4051795
ENSMUSG00000110949.2_1	chr19	+	770	4	FSM	ENSMUSG00000110949.2	ENSMUST00000025802.10	787	4	16	1	16	1	multi-exon	FALSE	canonical	3	59	junction_1	10.4243305140746	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTCTGGCATCTTCCGTG	3529	False	NA	8	True	ATTAAA	-17	NA	4050595	4052102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_4050848_4051195_4051329_4051627_4051706_4051795
ENSMUSG00000111063.2_0	chr9	+	2813	3	FSM	ENSMUSG00000111063.2	ENSMUST00000214957.2	5650	3	-28	2865	-28	-2865	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTATTGGTGTTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	122732282	122740354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_122732401_122733215_122733315_122737758
ENSMUSG00000111080.2_0	chr10	-	1896	1	FSM	ENSMUSG00000111080.2	ENSMUST00000214634.2	3440	1	-176	1720	-176	-1720	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAATGCCAATGTGCAT	NA	False	NA	NA	False	AATAAA	-26	NA	30482806	30480910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_30480900_30482800
ENSMUSG00000111088.2_0	chr9	-	178	1	FSM	ENSMUSG00000111088.2	ENSMUST00000217460.2	818	1	637	3	637	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAATGAGTATTCAT	NA	False	NA	NA	False	NA	NA	NA	44290110	44289932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44289900_44290100
ENSMUSG00000111088.2_1	chr9	-	412	1	FSM	ENSMUSG00000111088.2	ENSMUST00000217460.2	818	1	80	326	80	-326	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTGGTACCGTCATTGT	NA	False	NA	NA	False	ACTAAA	-23	NA	44290667	44290255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44290300_44290700
ENSMUSG00000111089.2_0	chr9	+	894	2	FSM	ENSMUSG00000111089.2	ENSMUST00000215481.2	566	2	-45	-283	-45	283	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGATTGACTCAATCGTTT	NA	False	NA	NA	False	NA	NA	NA	119838825	119840797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_119838995_119840072
ENSMUSG00000111149.2_0	chr10	-	591	4	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-36	692	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_2	24.9131825880731	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGTCTCGGTCTCTTTC	NA	False	NA	-2	True	NA	NA	NA	34109563	34106210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_34106388_34106902_34107071_34107314_34107400_34109402
ENSMUSG00000111149.2_1	chr10	-	503	3	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-33	692	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	27.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGTCTCGGTCTCTTTC	NA	False	NA	-2	True	NA	NA	NA	34109560	34106210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_34106388_34106902_34107071_34109402
ENSMUSG00000111291.2_0	chr9	-	2782	1	FSM	ENSMUSG00000111291.2	ENSMUST00000217413.2	2420	1	-2759	2397	-2759	-2397	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGAGTGTGGTGGTGC	NA	False	NA	-3	True	NA	NA	NA	44206519	44203737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44203700_44206500
ENSMUSG00000111312.2_0	chr9	-	2214	1	FSM	ENSMUSG00000111312.2	ENSMUST00000215551.2	2290	1	76	0	76	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCCCTGAGTGGAGAGA	NA	False	NA	NA	False	ATTAAA	-2	NA	44395024	44392810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_44392800_44395000
ENSMUSG00000111334.2_1	chr9	-	2736	1	FSM	ENSMUSG00000111334.2	ENSMUST00000217551.2	2828	1	-1108	1200	-1108	-1200	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43654100	43651364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_43651400_43654100
ENSMUSG00000111375.5_0	chr5	+	1483	6	FSM	ENSMUSG00000111375.5	ENSMUST00000162298.4	1408	6	-86	11	-86	-11	multi-exon	FALSE	canonical	1	1	junction_5	10.3266645147405	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACTTGAAAGACCTGTCT	NA	False	NA	NA	False	NA	NA	NA	107585776	107619494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_107586012_107593728_107593924_107599854_107600052_107609303_107609422_107618573_107618664_107618846
ENSMUSG00000111375.5_10	chr5	+	2543	3	ISM	ENSMUSG00000111375.5	ENSMUST00000162298.4	1408	6	-80	17532	-80	-17532	5prime_fragment	FALSE	canonical	3	27	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTATTTGTATCTCATT	NA	False	NA	NA	False	AGTAAA	-16	NA	107585782	107601973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_107586012_107593728_107593924_107599854
ENSMUSG00000111375.5_4	chr5	+	5910	17	ISM	ENSMUSG00000111375.5	ENSMUST00000211896.2	5256	18	-42	617	-42	-4	5prime_fragment	FALSE	canonical	2	10	junction_13	5.58142846859117	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATTTTGTAAAAATGTTA	NA	False	NA	NA	False	AATAAA	-17	NA	107585820	107658070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_107586012_107593728_107593924_107599854_107600052_107609303_107609422_107618573_107618664_107632912_107632994_107633622_107633720_107638528_107638618_107639344_107639448_107643736_107643920_107644601_107644740_107645586_107645717_107647892_107647955_107651204_107651881_107652369_107652461_107652856_107652997_107654741
ENSMUSG00000111375.5_5	chr5	+	5452	18	FSM	ENSMUSG00000111375.5	ENSMUST00000211896.2	5256	18	-42	-154	-42	154	multi-exon	FALSE	canonical	2	4	junction_17	6.08645896223428	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGATGTCTCATATTTTG	NA	False	NA	64	True	AATATA	-13	NA	107585820	107658841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_107586012_107593728_107593924_107599854_107600052_107609303_107609422_107618573_107618664_107632912_107632994_107633622_107633720_107638528_107638618_107639344_107639448_107643736_107643920_107644601_107644740_107645586_107645717_107647892_107647955_107651204_107651881_107652369_107652461_107652856_107652997_107654741_107656989_107658217
ENSMUSG00000111375.5_8	chr5	+	4732	8	ISM	ENSMUSG00000111375.5	ENSMUST00000211896.2	5256	18	57881	627	-1500	-14	internal_fragment	FALSE	canonical	2	10	junction_4	1.97948663722157	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTTGTCAATTTTGT	NA	False	NA	NA	False	AATAAA	-7	NA	107643743	107658060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_107643920_107644601_107644740_107645586_107645717_107647892_107647955_107651204_107651881_107652369_107652461_107652856_107652997_107654741
ENSMUSG00000111497.2_13	chr9	-	3449	13	FSM	ENSMUSG00000010205.12	ENSMUST00000115487.3	3470	13	11	10	11	-10	multi-exon	FALSE	canonical	3	416	junction_7	41.8140725912541	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATCAGAGCTGG	NA	False	NA	-12	True	ATTAAA	-21	NA	21003293	20985463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_20986793_20986880_20986965_20987259_20987404_20987862_20987938_20990504_20990811_20990896_20991109_20991379_20991468_20992000_20992114_20992270_20992401_20992479_20992672_20997540_20998011_21001545_21001613_21003054
ENSMUSG00000111497.2_16	chr9	-	3446	13	NIC	ENSMUSG00000010205.12	novel	3470	13	NA	NA	11	-10	combination_of_known_splicesites	FALSE	canonical	3	40	junction_7	131.926642073877	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATCAGAGCTGG	NA	False	NA	-12	True	ATTAAA	-21	NA	21003293	20985463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_20986793_20986880_20986965_20987259_20987404_20987862_20987938_20990504_20990811_20990896_20991109_20991379_20991465_20992000_20992114_20992270_20992401_20992479_20992672_20997540_20998011_21001545_21001613_21003054
ENSMUSG00000111662.2_1	chr9	+	870	2	FSM	ENSMUSG00000111662.2	ENSMUST00000214039.2	486	2	-6	-378	-6	378	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTTGTGTGGATTGCTT	NA	False	NA	NA	False	NA	NA	NA	55845529	55857665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_55845849_55857114
ENSMUSG00000111753.2_0	chr10	-	510	2	FSM	ENSMUSG00000111753.2	ENSMUST00000214107.2	555	2	46	-1	46	1	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGACTTAGTTCCATT	NA	False	NA	NA	False	NA	NA	NA	35361346	35354821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_35355139_35361153
ENSMUSG00000111831.2_0	chr9	-	1858	2	FSM	ENSMUSG00000111831.2	ENSMUST00000215385.2	790	2	460	-1528	460	1528	multi-exon	FALSE	canonical	3	5	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGCTTTTATCAGCGTG	NA	False	NA	NA	False	NA	NA	NA	120579749	120571127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_120572855_120579618
ENSMUSG00000111888.2_1	chr10	+	696	2	FSM	ENSMUSG00000111888.2	ENSMUST00000220256.2	1003	2	632	-325	632	325	multi-exon	FALSE	canonical	3	15	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGATTTATTACGCCTA	NA	False	NA	NA	False	AATAAA	-18	NA	14420865	14427100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_14421099_14426637
ENSMUSG00000111977.2_0	chr10	+	2235	1	FSM	ENSMUSG00000111977.2	ENSMUST00000219233.2	1665	1	-573	3	-573	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCGCTGTTGACGGAGGA	NA	False	NA	NA	False	AATAAA	-17	NA	79473116	79475351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_79473100_79475400
ENSMUSG00000112082.2_0	chr10	-	1361	2	FSM	ENSMUSG00000112082.2	ENSMUST00000218838.2	628	2	-2	-731	-2	731	multi-exon	FALSE	canonical	1	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCACAGTGCTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	99296094	99287784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_99289098_99296046
ENSMUSG00000112132.2_0	chr10	+	1606	3	FSM	ENSMUSG00000112132.2	ENSMUST00000218737.2	1855	3	17	232	17	-232	multi-exon	FALSE	canonical	3	22	junction_1	4.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTCACCCAGTCTTGC	5711	False	NA	NA	False	ATTAAA	-13	NA	53285994	53300136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_53286053_53297604_53297685_53298668
ENSMUSG00000112134.2_2	chr10	+	745	2	NIC	ENSMUSG00000112134.2	novel	603	4	NA	NA	-88	397	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	83180288	83187340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_83180563_83186869
ENSMUSG00000112134.2_4	chr10	+	855	4	FSM	ENSMUSG00000112134.2	ENSMUST00000219407.2	603	4	-118	-134	-118	134	multi-exon	TRUE	canonical	2	3	junction_2	3.55902608401044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGACGAATGAACACAT	NA	False	NA	NA	False	NA	NA	NA	83180258	83187077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_83180563_83185918_83186165_83186398_83186496_83186869
ENSMUSG00000112160.2_0	chr10	+	2746	4	FSM	ENSMUSG00000112160.2	ENSMUST00000220287.2	2726	4	-20	0	-20	0	multi-exon	FALSE	canonical	3	41	junction_1	4.78423336480244	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATATACTGCCATCCAT	NA	False	NA	NA	False	AATAAA	-19	NA	81919166	81947050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572
ENSMUSG00000112160.2_2	chr10	+	2674	1	Genic_Genomic	ENSMUSG00000112160.2	novel	NA	NA	NA	NA	26453	1263	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACGTGTATTACTGAGAAA	NA	False	NA	NA	False	AATAAA	-7	NA	81945639	81948313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_+_81945600_81948300
ENSMUSG00000112188.2_1	chr10	+	665	3	FSM	ENSMUSG00000112188.2	ENSMUST00000219583.2	670	3	5	0	5	0	multi-exon	FALSE	canonical	3	30	junction_1	1	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGTAAGTAATCTAGG	3225	False	NA	NA	False	NA	NA	NA	95567093	95575215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_95567365_95570676_95570791_95574935
ENSMUSG00000112227.2_0	chr10	+	373	2	NIC	ENSMUSG00000112227.2	novel	628	3	NA	NA	20	-58	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCAGCTGACTTTTAATA	NA	False	NA	NA	False	AATAAA	-20	NA	15667544	15682755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_15667781_15682618
ENSMUSG00000112227.2_1	chr10	+	385	2	NNC	ENSMUSG00000112227.2	novel	628	3	NA	NA	19	-58	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCAGCTGACTTTTAATA	NA	False	NA	NA	False	AATAAA	-20	NA	15667543	15682755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_15667792_15682618
ENSMUSG00000112241.2_0	chr10	+	2197	8	NIC	ENSMUSG00000112241.2	novel	512	6	NA	NA	38	4450	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	535.279480691143	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTTGTGTGGTGCTCA	NA	False	NA	5	True	AATAAA	-18	NA	77442068	77481827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_77442176_77445645_77445775_77449813_77449886_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
ENSMUSG00000112261.2_1	chr10	-	2257	3	FSM	ENSMUSG00000112261.2	ENSMUST00000219379.2	660	3	25	-1622	25	1622	multi-exon	FALSE	canonical	3	19	junction_2	4.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCACTGGGGGTGCATA	1578	False	NA	NA	False	NA	NA	NA	95297061	95279555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_95281620_95296475_95296588_95296980
ENSMUSG00000112261.2_3	chr10	-	1613	2	NNC	ENSMUSG00000112261.2	novel	660	3	NA	NA	7808	1082	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATTTGATATGACCTCCA	9361	False	NA	NA	False	AAAACA	-19	NA	95289278	95280095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_95281620_95289189
ENSMUSG00000112261.2_4	chr10	-	2191	3	NNC	ENSMUSG00000112261.2	novel	660	3	NA	NA	25	1587	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	7.5	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATAAAAATAAA	1578	False	NA	NA	False	NA	NA	NA	95297061	95279590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_-_95281620_95296475_95296557_95296980
ENSMUSG00000112261.2_6	chr10	-	2110	2	NIC	ENSMUSG00000112261.2	novel	660	3	NA	NA	25	1587	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATAAAAATAAA	1578	False	NA	NA	False	NA	NA	NA	95297061	95279590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_95281620_95296980
ENSMUSG00000112261.2_7	chr10	-	4010	2	ISM	ENSMUSG00000112261.2	ENSMUST00000219379.2	660	3	26	11480	26	-11480	5prime_fragment	FALSE	canonical	3	19	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGACCAAAAAAAAAAAAA	1579	False	NA	NA	False	NA	NA	NA	95297060	95292657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr10_-_95296588_95296980
ENSMUSG00000112278.2_0	chr12	+	488	1	FSM	ENSMUSG00000112278.2	ENSMUST00000218555.2	728	1	-164	404	-164	-404	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGGCTACCACTGCGTG	1539	False	NA	NA	False	AATAAA	-12	NA	80481818	80482306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_80481800_80482300
ENSMUSG00000112302.2_0	chr12	-	1443	1	FSM	ENSMUSG00000112302.2	ENSMUST00000219034.2	4240	1	-41	2838	-41	-2838	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATAAGCTTTCAAGTCTA	NA	False	NA	NA	False	AATAAA	-14	NA	78273340	78271897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_78271900_78273300
ENSMUSG00000112309.2_0	chr10	-	956	1	FSM	ENSMUSG00000112309.2	ENSMUST00000220243.2	1871	1	556	359	556	-359	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAGAGGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	62695217	62694261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62694300_62695200
ENSMUSG00000112392.2_7	chr12	+	1683	4	NNC	ENSMUSG00000112392.2	novel	661	2	NA	NA	176	69664	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	2.86744175568088	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTATATCACGCATTTT	NA	False	NA	NA	False	NA	NA	NA	77600296	77686147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_77600570_77616271_77616542_77684209_77684294_77685091
ENSMUSG00000112400.2_0	chr10	+	2421	2	NIC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-921	107	intron_retention	FALSE	canonical	3	133	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATGCAGTTTTGGAGG	NA	False	NA	NA	False	NA	NA	NA	95728383	95733226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_95730152_95732573
ENSMUSG00000112400.2_1	chr10	+	1792	4	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-320	614	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	59.0987873536054	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTATTAGAAACTCAGAATA	NA	False	NA	21	True	AATAAA	-14	NA	95728984	95733733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_95729296_95729415_95729523_95729937_95730152_95732573
ENSMUSG00000112400.2_10	chr10	+	1504	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	59	616	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	59	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAGAAACTCAGAATATC	NA	False	NA	23	True	AATAAA	-16	NA	95729363	95733735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_95729523_95729968_95730152_95732573
ENSMUSG00000112400.2_11	chr10	+	1494	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	98	614	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.5	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTATTAGAAACTCAGAATA	NA	False	NA	21	True	AATAAA	-14	NA	95729402	95733733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_95729523_95729937_95730152_95732573
ENSMUSG00000112400.2_12	chr10	+	901	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	59	107	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	59.5	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATGCAGTTTTGGAGG	NA	False	NA	NA	False	NA	NA	NA	95729363	95733226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_95729523_95730062_95730152_95732573
ENSMUSG00000112400.2_16	chr10	+	980	1	Genic_Genomic	ENSMUSG00000112400.2	novel	NA	NA	NA	NA	3441	606	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTTTGACTATTAGAAAC	2410	False	NA	13	True	AATAAA	-6	NA	95732745	95733725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_+_95732700_95733700
ENSMUSG00000112449.2_0	chr12	+	2132	16	FSM	ENSMUSG00000112449.2	ENSMUST00000110708.4	3646	16	273	1241	7	-1241	multi-exon	FALSE	canonical	3	704	junction_7	105.372650889856	567	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAAAGGGTTCGTTAAC	2627	False	NA	NA	False	AATAAA	-12	NA	55202161	55235117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
ENSMUSG00000112474.2_0	chr10	+	126	1	FSM	ENSMUSG00000112474.2	ENSMUST00000217912.2	553	1	458	-31	458	31	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATTACTCTAGT	NA	False	NA	NA	False	AATAAA	-30	NA	7408813	7408939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_7408800_7408900
ENSMUSG00000112505.2_0	chr12	-	252	1	Genic_Genomic	ENSMUSG00000112505.2	novel	NA	NA	NA	NA	4183	79	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTAGTTTTAAAACAAGTG	NA	False	NA	NA	False	NA	NA	NA	4622573	4622321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_4622300_4622600
ENSMUSG00000112614.2_0	chr10	+	2836	1	FSM	ENSMUSG00000112614.2	ENSMUST00000218405.2	2410	1	-114	-312	-114	312	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATTGAGAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	118089049	118091885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_118089000_118091900
ENSMUSG00000112639.2_0	chr10	+	342	2	FSM	ENSMUSG00000112639.2	ENSMUST00000217874.2	329	2	-14	1	-14	-1	multi-exon	FALSE	canonical	3	25	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGTCTCTTTTTAAATT	NA	False	NA	NA	False	AATAAA	-12	NA	126906335	126906969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_126906494_126906785
ENSMUSG00000112690.3_1	chr12	-	1905	8	FSM	ENSMUSG00000112690.3	ENSMUST00000220144.3	847	8	-31	-1027	-31	1027	multi-exon	FALSE	canonical	2	2	junction_7	67.4325059384779	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGAATGAGATTTTGTC	NA	False	NA	NA	False	ATTAAA	-7	NA	55276776	55262933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_55264133_55265221_55265282_55267080_55267219_55270951_55271089_55271469_55271546_55271629_55271686_55272724_55272858_55276670
ENSMUSG00000112693.2_0	chr19	+	1720	1	FSM	ENSMUSG00000112693.2	ENSMUST00000220222.2	1522	1	-94	-104	-94	104	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGCAGGACTGTCTCAAA	NA	False	NA	NA	False	NA	NA	NA	12882589	12884309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_12882600_12884300
ENSMUSG00000112742.2_3	chr10	+	3508	5	NNC	ENSMUSG00000112742.2	novel	415	3	NA	NA	-8	4672	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	25.4693443182191	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGTTGCCTTGGTCATGG	NA	False	NA	1	True	NA	NA	NA	130378207	130412334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_130378320_130407161_130407289_130407478_130407540_130408627_130409350_130409848
ENSMUSG00000112742.2_6	chr10	+	451	3	FSM	ENSMUSG00000112742.2	ENSMUST00000218557.2	415	3	-10	-26	-10	26	multi-exon	FALSE	canonical	3	54	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTATTGTTTAAATTCT	NA	False	NA	NA	False	NA	NA	NA	130378205	130407688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_130378320_130407161_130407289_130407478
ENSMUSG00000112742.2_8	chr10	+	3667	5	NNC	ENSMUSG00000112742.2	novel	415	3	NA	NA	-4	4672	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	25.4693443182191	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGTTGCCTTGGTCATGG	NA	False	NA	1	True	NA	NA	NA	130378211	130412334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_130378320_130407161_130407289_130407478_130407540_130408627_130409923_130410258
ENSMUSG00000112803.2_1	chr10	-	4118	3	FSM	ENSMUSG00000112803.2	ENSMUST00000217933.2	542	3	-161	-3415	-161	3415	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTACACCCAGTCTACT	NA	False	NA	NA	False	NA	NA	NA	25584002	25573892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_25577665_25581610_25581746_25583791
ENSMUSG00000112806.2_0	chr10	-	269	2	Genic_Genomic	ENSMUSG00000112806.2	novel	1431	1	NA	NA	946	113630	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTTCTTACAGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	62618020	62503905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_62503982_62617827
ENSMUSG00000112806.2_12	chr10	-	177	1	FSM	ENSMUSG00000112806.2	ENSMUST00000218355.2	1431	1	946	308	946	-308	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	62618020	62617843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_62617800_62618000
ENSMUSG00000112806.2_4	chr10	-	276	2	Genic_Genomic	ENSMUSG00000112806.2	novel	1431	1	NA	NA	946	113631	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCTTACAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	62618020	62503904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_62503982_62617821
ENSMUSG00000112808.2_0	chr10	+	987	1	FSM	ENSMUSG00000112808.2	ENSMUST00000218296.2	633	1	-38	-316	-38	316	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	AGTAAA	-16	NA	25983648	25984635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_25983600_25984600
ENSMUSG00000112819.2_0	chr12	-	477	3	FSM	ENSMUSG00000112819.2	ENSMUST00000217932.2	457	3	-21	1	-21	0	multi-exon	FALSE	canonical	3	11	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	4603806	4602546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_4602746_4603013_4603176_4603690
ENSMUSG00000112819.2_2	chr12	-	317	2	NIC	ENSMUSG00000112819.2	novel	457	3	NA	NA	-21	1	combination_of_known_splicesites	FALSE	canonical	3	47	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	4603806	4602544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_4602746_4603690
ENSMUSG00000112825.2_0	chr10	+	762	1	FSM	ENSMUSG00000112825.2	ENSMUST00000219246.2	754	1	-8	0	-8	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCATTGAACATTCCTGGG	NA	False	NA	NA	False	NA	NA	NA	56373428	56374190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_56373400_56374200
ENSMUSG00000112858.3_0	chr14	+	1182	15	FSM	ENSMUSG00000112858.3	ENSMUST00000218311.2	1201	15	12	7	3	4	multi-exon	TRUE	canonical	3	13	junction_1	4.37525509460387	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATTTTTAAAAACTG	NA	False	NA	-6	True	NA	NA	NA	55051609	55091545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55051743_55053942_55054044_55056993_55057047_55057594_55057670_55075569_55075686_55076681_55076743_55077723_55077753_55079339_55079387_55079595_55079639_55079805_55079867_55080243_55080293_55086123_55086164_55086751_55086847_55087992_55088055_55091328
ENSMUSG00000112880.2_0	chr12	-	1122	3	FSM	ENSMUSG00000112880.2	ENSMUST00000219062.2	1118	3	11	-15	11	15	multi-exon	FALSE	canonical	2	4	junction_2	3	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAACCTGGGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	80992159	80989431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_80989717_80989815_80990004_80991510
ENSMUSG00000112909.2_0	chr10	+	269	1	FSM	ENSMUSG00000112909.2	ENSMUST00000219845.2	357	1	163	-75	163	75	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAACTA	NA	False	NA	-10	True	AATAAA	-18	NA	127847807	127848076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_127847800_127848100
ENSMUSG00000112964.2_2	chr13	-	5599	3	FSM	ENSMUSG00000112964.2	ENSMUST00000222130.2	1321	3	-453	-3825	-453	3059	multi-exon	FALSE	canonical	3	11	junction_1	9.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTAATTTCAAGTGC	3959	False	NA	NA	False	NA	NA	NA	74587421	74579840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74583936_74585699_74585761_74585978
ENSMUSG00000112964.2_6	chr13	-	3970	4	FSM	ENSMUSG00000112964.2	ENSMUST00000222455.2	1614	4	24	-2380	0	2380	multi-exon	FALSE	canonical	3	37	junction_3	3.29983164553722	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTTTATTTCTGACTCT	6493	False	NA	NA	False	ATTAAA	-12	NA	74610814	74593010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74596679_74598074_74598136_74598354_74598482_74610700
ENSMUSG00000112964.2_7	chr13	-	6779	4	Fusion	ENSMUSG00000113019.2_ENSMUSG00000112964.2	novel	1614	4	NA	NA	8	5203	multi-exon	FALSE	canonical	2	11	junction_3	14.9888847706114	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGGGTCTGGATTACTT	NA	False	NA	NA	False	NA	NA	NA	74670572	74590187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr13_-_74596679_74598074_74598136_74598354_74598482_74670472
ENSMUSG00000112964.2_8	chr13	-	3726	2	ISM	ENSMUSG00000112964.2	ENSMUST00000221334.2	1440	3	12690	-2411	-6011	2388	3prime_fragment	FALSE	canonical	3	40	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGACTCTCCAGTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	74598124	74593002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_74596679_74598074
ENSMUSG00000112975.2_0	chr12	-	3045	4	Genic_Genomic	ENSMUSG00000112975.2	novel	126	1	NA	NA	-286	38542	multi-exon	FALSE	canonical	3	16	junction_2	4.08248290463863	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATATAAAAAAACATACTG	NA	False	NA	NA	False	NA	NA	NA	24302468	24263514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_24265960_24267293_24267355_24267554_24267682_24302056
ENSMUSG00000112980.2_0	chr12	-	2453	2	FSM	ENSMUSG00000112980.2	ENSMUST00000220477.2	2941	2	42	446	42	-446	multi-exon	FALSE	canonical	2	13	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAAGTCCAGTCTCAGT	NA	False	NA	-5	True	NA	NA	NA	116368788	116366012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_116368264_116368586
ENSMUSG00000112980.2_1	chr12	-	2001	1	ISM	ENSMUSG00000112980.2	ENSMUST00000220477.2	2941	2	817	446	817	-446	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAAGTCCAGTCTCAGT	NA	False	NA	-5	True	NA	NA	NA	116368013	116366012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_116366000_116368000
ENSMUSG00000112980.2_2	chr12	-	2423	2	NNC	ENSMUSG00000112980.2	novel	2941	2	NA	NA	35	-444	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	0	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAGTCCAGTCTCAGTGT	NA	False	NA	-3	True	NA	NA	NA	116368795	116366010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_-_116368264_116368625
ENSMUSG00000112997.2_0	chr12	-	4393	4	Genic_Genomic	ENSMUSG00000112997.2	novel	126	1	NA	NA	-284	21704	multi-exon	FALSE	canonical	3	21	junction_3	10.6249183003395	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTCCTTGTATTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	23684760	23662646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_23666442_23667883_23667945_23668146_23668274_23684350
ENSMUSG00000113003.2_0	chr12	-	169	1	FSM	ENSMUSG00000113003.2	ENSMUST00000223213.2	3370	1	3199	2	3199	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAATAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	99332973	99332804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_99332800_99333000
ENSMUSG00000113019.2_0	chr13	-	1987	4	FSM	ENSMUSG00000113019.2	ENSMUST00000220784.2	395	4	-10	-1582	-10	1582	multi-exon	FALSE	canonical	3	31	junction_3	21.249836600679	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	74670590	74656134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74657816_74659212_74659274_74659474_74659602_74670472
ENSMUSG00000113019.2_1	chr13	-	2161	6	NNC	ENSMUSG00000113019.2	novel	395	4	NA	NA	-364	1584	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	30.2628485110044	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGGCTACATTT	NA	False	NA	NA	False	NA	NA	NA	74670944	74656132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_74657816_74659212_74659274_74659474_74659602_74670472_74670559_74670660_74670790_74670869
ENSMUSG00000113019.2_2	chr13	-	4853	3	ISM	ENSMUSG00000113019.2	ENSMUST00000220784.2	395	4	7995	-1582	7995	1582	3prime_fragment	FALSE	canonical	3	55	junction_1	14	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	74662585	74656134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_74657816_74659212_74659274_74659474
ENSMUSG00000113030.2_0	chr13	-	885	4	NIC	ENSMUSG00000113030.2	novel	558	5	NA	NA	-799	-27051	combination_of_known_splicesites	FALSE	canonical	2	19	junction_1	225.274647190195	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGCTCTACATTGTAT	NA	False	NA	NA	False	ATTAAA	-15	NA	18167917	18162785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_18163191_18164161_18164368_18166212_18166335_18167765
ENSMUSG00000113047.2_1	chr13	-	3385	4	ISM	ENSMUSG00000113047.2	ENSMUST00000222092.2	704	5	399	-2767	17	2577	3prime_fragment	FALSE	canonical	3	33	junction_3	16.8720676464584	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTATATTTCTGACTCT	NA	False	NA	-8	True	ATTAAA	-12	NA	74711976	74699451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_74702530_74703925_74703987_74704201_74704329_74711857
ENSMUSG00000113047.2_3	chr13	-	3459	5	FSM	ENSMUSG00000113047.2	ENSMUST00000222092.2	704	5	12	-2767	12	2577	multi-exon	FALSE	canonical	3	16	junction_4	21.3658606192215	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTATATTTCTGACTCT	NA	False	NA	-8	True	ATTAAA	-12	NA	74712363	74699451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74702530_74703925_74703987_74704201_74704329_74711857_74711944_74712256
ENSMUSG00000113047.2_4	chr13	-	3252	3	FSM	ENSMUSG00000113047.2	ENSMUST00000221408.2	1428	3	758	-2582	758	2582	multi-exon	FALSE	canonical	3	49	junction_1	12.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTCTGACTCTCCAGT	NA	False	NA	-3	True	ATTAAA	-17	NA	74704309	74699446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74702530_74703925_74703987_74704201
ENSMUSG00000113061.2_0	chr13	+	242	1	FSM	ENSMUSG00000113061.2	ENSMUST00000223428.2	607	1	366	-1	366	1	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAAATTTAGTAATAT	NA	False	NA	-3	True	AATAAA	-16	NA	28441876	28442118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_28441900_28442100
ENSMUSG00000113081.2_10	chr13	+	996	1	Genic_Genomic	ENSMUSG00000113081.2	novel	NA	NA	NA	NA	1771	274	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCTGATGGCCCGTTGT	NA	False	NA	10	True	AATAAA	-12	NA	62422345	62423341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_62422300_62423300
ENSMUSG00000113081.2_2	chr13	+	420	3	FSM	ENSMUSG00000113081.2	ENSMUST00000221637.2	452	3	30	2	30	-2	multi-exon	FALSE	canonical	3	513	junction_2	20.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAATTGCAGGTATCTG	NA	False	NA	11	True	NA	NA	NA	62411409	62421099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_62411510_62420579_62420707_62420906
ENSMUSG00000113081.2_3	chr13	+	1499	4	NNC	ENSMUSG00000113081.2	novel	452	3	NA	NA	30	274	at_least_one_novel_splicesite	FALSE	canonical	3	125	junction_3	193.294823750893	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCTGATGGCCCGTTGT	NA	False	NA	10	True	AATAAA	-12	NA	62411409	62423341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_62411510_62420579_62420707_62420906_62420968_62422130
ENSMUSG00000113113.2_0	chr12	-	468	1	FSM	ENSMUSG00000113113.2	ENSMUST00000223227.2	403	1	-30	-35	-30	35	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAGAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-5	NA	100711224	100710756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_100710800_100711200
ENSMUSG00000113123.3_0	chr12	-	2991	5	Fusion	ENSMUSG00000113123.3_ENSMUSG00000113659.2	novel	329	3	NA	NA	-13	741	multi-exon	FALSE	non_canonical	0	0	junction_1	7.46240577829965	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAAGGTCTGTGAGTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	22673359	22458746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_-_22459395_22463191_22464950_22637248_22637310_22637509_22637637_22672962
ENSMUSG00000113123.3_14	chr12	-	2805	4	NIC	ENSMUSG00000113123.3	novel	734	5	NA	NA	-36	2174	intron_retention	FALSE	canonical	2	7	junction_1	4.08248290463863	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATATAAAAAAAACATACT	NA	False	NA	NA	False	NA	NA	NA	22673382	22633715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_22635913_22637248_22637310_22637509_22637637_22672962
ENSMUSG00000113135.2_15	chr13	-	563	3	FSM	ENSMUSG00000113135.2	ENSMUST00000220469.2	478	3	-18	-67	-18	67	multi-exon	FALSE	canonical	3	102	junction_2	85	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65768075	65763570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_65763903_65764103_65764190_65767930
ENSMUSG00000113152.2_0	chr12	-	3071	1	Genic_Genomic	ENSMUSG00000113152.2	novel	NA	NA	NA	NA	2974	952	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAGAGATTATCCATAAG	NA	False	NA	NA	False	NA	NA	NA	64196748	64193677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_64193700_64196700
ENSMUSG00000113174.2_2	chr12	-	1881	6	Fusion	ENSMUSG00000113174.2_ENSMUSG00000113798.2	novel	710	3	NA	NA	-286	571	multi-exon	FALSE	canonical	0	0	junction_2	5.89915248150105	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACCAATGTCTGTGA	NA	False	NA	NA	False	ATTAAA	-7	NA	23239685	23161964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_-_23162799_23163714_23163821_23165244_23165586_23200064_23200126_23200325_23200453_23239273
ENSMUSG00000113184.2_0	chr12	-	3175	1	FSM	ENSMUSG00000113184.2	ENSMUST00000221438.2	2223	1	-951	-1	-951	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCCTTCTCCTTGGAC	NA	False	NA	NA	False	AATAAA	-19	NA	81767777	81764602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_81764600_81767800
ENSMUSG00000113199.2_0	chr12	+	1293	4	Genic_Genomic	ENSMUSG00000113199.2	novel	126	1	NA	NA	-262	14243	multi-exon	FALSE	canonical	3	6	junction_3	5.8878405775519	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGTTTTCTAATTTTAC	NA	False	NA	NA	False	NA	NA	NA	18185924	18200555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_18186313_18199264_18199392_18199593_18199655_18199838
ENSMUSG00000113204.2_1	chr13	-	3487	4	NIC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18642	3076	combination_of_known_splicesites	FALSE	canonical	3	28	junction_3	25.3508711224421	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTGCCTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	74739511	74724400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_74727579_74728971_74729033_74729232_74729360_74739390
ENSMUSG00000113204.2_41	chr13	-	3319	5	FSM	ENSMUSG00000113204.2	ENSMUST00000222003.2	1371	5	241	-2189	-9	-3	multi-exon	FALSE	canonical	3	38	junction_3	23.1786539729985	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTGCCATGGTCATGAT	5209	False	NA	-8	True	NA	NA	NA	74765438	74753066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74760842_74761068_74765320
ENSMUSG00000113204.2_43	chr13	-	3370	6	FSM	ENSMUSG00000113204.2	ENSMUST00000220929.2	1179	6	1	-2192	1	0	multi-exon	FALSE	canonical	3	7	junction_4	38.8453343401753	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCATGGTCATGATGTC	5219	False	NA	-5	True	NA	NA	NA	74765428	74753063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74759382_74759441_74760842_74761068_74765320
ENSMUSG00000113204.2_47	chr13	-	3096	4	FSM	ENSMUSG00000113204.2	ENSMUST00000221506.2	1288	4	383	-2191	-9	-1	multi-exon	FALSE	canonical	3	22	junction_3	33.95094500403	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGCCATGGTCATGATGT	5209	False	NA	-6	True	NA	NA	NA	74765438	74753064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74765320
ENSMUSG00000113204.2_48	chr13	-	3442	6	FSM	ENSMUSG00000113204.2	ENSMUST00000220478.2	1989	6	386	-1839	-6	-1	multi-exon	FALSE	canonical	3	17	junction_3	36.0366480128216	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGCCATGGTCATGATGT	5212	False	NA	-6	True	NA	NA	NA	74765435	74753064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74759382_74759507_74760842_74761068_74765320
ENSMUSG00000113204.2_50	chr13	-	1669	1	NIC	ENSMUSG00000113204.2	novel	1703	7	NA	NA	3420	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGCCATGGTCATGATGT	NA	False	NA	-6	True	NA	NA	NA	74754733	74753064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_74753100_74754700
ENSMUSG00000113209.2_0	chr12	+	697	1	Genic_Genomic	ENSMUSG00000113209.2	novel	NA	NA	NA	NA	-19	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGGCCTGACACATTTG	NA	False	NA	NA	False	AATAAA	-18	NA	54909756	54910453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_54909800_54910500
ENSMUSG00000113211.2_0	chr13	+	3617	7	ISM	ENSMUSG00000113211.2	ENSMUST00000220691.2	3270	8	-44	3	-44	-3	intron_retention	FALSE	canonical	2	4	junction_2	2.74873708374511	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAAGAAAATGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	52250732	52278191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_52250877_52252577_52252882_52253329_52253416_52272202_52272728_52273173_52273596_52274101_52274239_52276192
ENSMUSG00000113211.2_2	chr13	+	3248	8	FSM	ENSMUSG00000113211.2	ENSMUST00000220691.2	3270	8	0	22	0	-22	multi-exon	FALSE	canonical	1	1	junction_7	3.45229884959845	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAACTTCATTGCCTCA	NA	False	NA	NA	False	NA	NA	NA	52250776	52278172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_52250877_52252577_52252882_52253329_52253416_52272202_52272728_52273173_52273596_52274101_52274239_52276192_52276778_52277083
ENSMUSG00000113211.2_6	chr13	+	2546	3	ISM	ENSMUSG00000113211.2	ENSMUST00000220691.2	3270	8	22409	3	20608	-3	intron_retention	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAAGAAAATGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	52273185	52278191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_52273596_52274101_52274239_52276192
ENSMUSG00000113211.2_7	chr13	+	1973	1	NIC	ENSMUSG00000113211.2	novel	3270	8	NA	NA	23639	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACCAAAGAAAATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	52276216	52278189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_52276200_52278200
ENSMUSG00000113252.2_0	chr13	-	733	3	FSM	ENSMUSG00000113252.2	ENSMUST00000223171.2	673	3	-61	1	-61	-1	multi-exon	FALSE	canonical	1	1	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTTTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	44172059	44164068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_44164387_44165586_44165819_44171876
ENSMUSG00000113255.2_0	chr13	+	2168	1	FSM	ENSMUSG00000113255.2	ENSMUST00000222404.2	3272	1	895	209	895	-209	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-8	NA	49647688	49649856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_49647700_49649900
ENSMUSG00000113260.2_2	chr13	-	2555	4	NNC	ENSMUSG00000113260.2	novel	1038	6	NA	NA	-6179	451	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_3	36.9143151997523	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	1651	False	NA	NA	False	NA	NA	NA	65846989	65836975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_65839244_65840427_65840489_65840688_65840816_65846890
ENSMUSG00000113262.2_0	chr10	+	1425	5	FSM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	15	4	15	-4	multi-exon	FALSE	canonical	3	742	junction_3	32.2286751201473	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTGCTGGCTCCTGCTG	NA	False	NA	11	True	AATAAA	-15	NA	81220276	81224182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81223540
ENSMUSG00000113322.2_0	chr13	-	3033	1	Genic_Genomic	ENSMUSG00000113322.2	novel	NA	NA	NA	NA	2547	1343	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAAGTATGCTTTGGGT	NA	False	NA	NA	False	AATAAA	-18	NA	16545218	16542185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_16542200_16545200
ENSMUSG00000113340.2_0	chr13	-	2477	1	FSM	ENSMUSG00000113340.2	ENSMUST00000220900.2	641	1	-1801	-35	-1801	35	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	64096136	64093659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_64093700_64096100
ENSMUSG00000113346.3_0	chr13	-	1281	3	FSM	ENSMUSG00000113346.3	ENSMUST00000223470.3	1306	3	24	1	24	-1	multi-exon	FALSE	canonical	3	37	junction_2	10.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTCCTGAGTTCAAATC	NA	False	NA	-1	True	NA	NA	NA	73495479	73492784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_73493358_73494614_73495181_73495337
ENSMUSG00000113346.3_1	chr13	-	1288	3	NNC	ENSMUSG00000113346.3	novel	1306	3	NA	NA	21	-2	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	18.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAGGTCCTGAGTTCAAAT	NA	False	NA	-2	True	NA	NA	NA	73495482	73492785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_73493358_73494614_73495181_73495332
ENSMUSG00000113404.2_1	chr13	-	2848	3	NNC	ENSMUSG00000113404.2	novel	2746	2	NA	NA	-2775	0	intron_retention	FALSE	canonical	3	5	junction_1	1	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATTTTATGTGTTTGT	NA	False	NA	NA	False	AATATA	-12	NA	54484674	54463923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_54466497_54481726_54481884_54484556
ENSMUSG00000113404.2_6	chr13	-	2856	3	NNC	ENSMUSG00000113404.2	novel	2746	2	NA	NA	-3219	0	intron_retention	FALSE	canonical	1	2	junction_2	1.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATTTTATGTGTTTGT	NA	False	NA	NA	False	AATATA	-12	NA	54485118	54463923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_54466497_54481726_54481884_54484992
ENSMUSG00000113406.2_29	chr13	-	2804	5	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	5	-345	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	39.8834238750888	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAACCTTGACTTAGCTC	7286	False	NA	NA	False	NA	NA	NA	65496406	65484380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_65486565_65486901_65487225_65488362_65488424_65488791_65488919_65496297
ENSMUSG00000113406.2_30	chr13	-	2895	6	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	-2	-345	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	41.3444071187386	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAACCTTGACTTAGCTC	7279	False	NA	NA	False	NA	NA	NA	65496413	65484380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_65486229_65486397_65486755_65486838_65487225_65488362_65488424_65488791_65488919_65496297
ENSMUSG00000113416.2_0	chr12	+	3983	4	Fusion	ENSMUSG00000113416.2_ENSMUSG00000113234.2	novel	1815	2	NA	NA	-263	1707	multi-exon	FALSE	canonical	1	1	junction_3	17.326921891156	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGTATTTGGTTGT	NA	False	NA	NA	False	AATAAA	-12	NA	18042870	18079175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_18043260_18074048_18074176_18074375_18074437_18075769
ENSMUSG00000113427.2_0	chr12	+	7997	1	FSM	ENSMUSG00000113427.2	ENSMUST00000222979.2	4288	1	-3722	13	-3722	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATAAACGATTTGGGGTT	NA	False	NA	NA	False	AATAAA	-2	NA	106046906	106054903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_106046900_106054900
ENSMUSG00000113440.2_0	chr13	-	4110	1	FSM	ENSMUSG00000113440.2	ENSMUST00000221461.2	4114	1	4	0	4	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGTTTTATTAGCTTA	NA	False	NA	NA	False	AATAAA	-16	NA	23630101	23625991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_23626000_23630100
ENSMUSG00000113450.2_1	chr13	-	2019	4	FSM	ENSMUSG00000113450.2	ENSMUST00000221747.2	2492	4	15	458	-11	-2	multi-exon	FALSE	canonical	3	15	junction_1	11.5566238822398	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTTTGCATATCACAGT	9527	False	NA	-6	True	NA	NA	NA	62614631	62601287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62603008_62604500_62604562_62604746_62604874_62614520
ENSMUSG00000113450.2_2	chr13	-	1373	1	ISM	ENSMUSG00000113450.2	ENSMUST00000221747.2	2492	4	11986	458	11947	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTTTGCATATCACAGT	NA	False	NA	-6	True	NA	NA	NA	62602660	62601287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_-_62601300_62602700
ENSMUSG00000113450.2_4	chr13	-	2186	6	Fusion	ENSMUSG00000113623.2_ENSMUSG00000113450.2	novel	633	4	NA	NA	-6	817	multi-exon	FALSE	canonical	1	2	junction_3	54.6355195820448	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGTCTAGGCATGTAAA	9532	False	NA	NA	False	AATAAA	-20	NA	62614626	62549489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr13_-_62551194_62555228_62555290_62555482_62555610_62604500_62604562_62604746_62604874_62614520
ENSMUSG00000113450.2_6	chr13	-	2818	3	FSM	ENSMUSG00000113450.2	ENSMUST00000223247.2	1949	3	29	-898	16	442	multi-exon	FALSE	canonical	3	10	junction_1	14.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGTGGACCACTTG	9567	False	NA	NA	False	NA	NA	NA	62614591	62600387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62603008_62604746_62604874_62614520
ENSMUSG00000113559.2_0	chr13	-	1826	3	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-8284	-554	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_2	59.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGCTGGCTATCATTG	NA	False	NA	NA	False	NA	NA	NA	66138889	66125087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_66126651_66126851_66126979_66138753
ENSMUSG00000113566.2_11	chr13	+	1938	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	-25	-1027	-3	957	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACGTATAAAACTTTGG	NA	False	NA	NA	False	ATTAAA	-24	NA	62245558	62260818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
ENSMUSG00000113566.2_15	chr13	+	1189	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222089.2	478	4	-1	-710	-1	286	multi-exon	FALSE	canonical	3	66	junction_3	212.90112467737	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGCCTTGGTAATGGT	NA	False	NA	4	True	NA	NA	NA	62245560	62260147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259238
ENSMUSG00000113566.2_3	chr13	+	1289	4	NNC	ENSMUSG00000113566.2	novel	478	4	NA	NA	-118706	288	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	214.715832878921	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCTTGGTAATGGTGT	1161	False	NA	6	True	NA	NA	NA	62126855	62260149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_62126970_62254561_62254689_62254881_62254943_62259162
ENSMUSG00000113574.2_5	chr12	-	2697	4	Genic_Genomic	ENSMUSG00000113574.2_ENSMUSG00000113569.2	novel	1449	1	NA	NA	-273	584	multi-exon	FALSE	canonical	3	7	junction_1	18.8030730348939	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACACACACTGG	NA	False	NA	NA	False	NA	NA	NA	22795685	22774558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_22776671_22778007_22778069_22778268_22778396_22795288
ENSMUSG00000113581.2_0	chr12	-	2226	4	FSM	ENSMUSG00000113581.2	ENSMUST00000222401.2	1380	4	-847	1	-847	-1	multi-exon	FALSE	canonical	1	5	junction_3	2.05480466765633	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACGTGTACAGTGTGGA	NA	False	NA	NA	False	AATAAA	-14	NA	110245453	110241822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_110242012_110243059_110243861_110243984_110244184_110244416
ENSMUSG00000113581.2_1	chr12	-	1498	3	ISM	ENSMUSG00000113581.2	ENSMUST00000222401.2	1380	4	116	-1	12	1	intron_retention	FALSE	canonical	3	7	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGTGTACAGTGTGGACT	NA	False	NA	NA	False	AATAAA	-16	NA	110244490	110241820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_110242012_110243059_110243861_110243984
ENSMUSG00000113581.2_2	chr12	-	2559	2	ISM	ENSMUSG00000113581.2	ENSMUST00000222401.2	1380	4	-823	1	-823	-1	intron_retention	FALSE	canonical	3	10	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACGTGTACAGTGTGGA	NA	False	NA	NA	False	AATAAA	-14	NA	110245429	110241822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_110242012_110243059
ENSMUSG00000113623.2_11	chr13	-	2493	6	Fusion	ENSMUSG00000113623.2_ENSMUSG00000094942.8	novel	2310	4	NA	NA	10	-3	multi-exon	FALSE	canonical	2	10	junction_3	56.1070405564221	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTGTGTGTGGATCAG	NA	False	NA	-15	True	NA	NA	NA	62564847	62516144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62555228_62555290_62555482_62555610_62564751
ENSMUSG00000113623.2_18	chr13	-	1588	4	FSM	ENSMUSG00000113623.2	ENSMUST00000221436.2	633	4	12	-967	12	419	multi-exon	FALSE	canonical	3	100	junction_1	23.5372045918796	333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACGTATAAAACTTTGG	NA	False	NA	NA	False	ATTAAA	-24	NA	62564845	62549887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_62551194_62555228_62555290_62555482_62555610_62564751
ENSMUSG00000113625.2_0	chr12	-	167	1	FSM	ENSMUSG00000113625.2	ENSMUST00000222259.2	642	1	535	-60	535	60	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	109860992	109860825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_109860800_109861000
ENSMUSG00000113626.2_3	chr13	+	2463	6	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	47	462	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	28.9316435758496	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATGTGGTAAAAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	61952126	62009951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_61952220_62005782_62005910_62006094_62006156_62007517_62008663_62008746_62009048_62009215
ENSMUSG00000113640.2_0	chr10	+	1392	2	FSM	ENSMUSG00000113640.2	ENSMUST00000038411.5	1411	2	15	4	-1	-4	multi-exon	FALSE	canonical	3	56	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTGCCGTTTGCACTC	NA	False	NA	-1	True	AATAAA	-11	NA	80438728	80443484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80438784_80442147
ENSMUSG00000113640.2_1	chr10	+	1561	2	FSM	ENSMUSG00000113640.2	ENSMUST00000221960.2	795	2	-3	-763	-3	-12	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCAAACCAAGTTGCCGT	NA	False	NA	-9	True	AATAAA	-3	NA	80438726	80443476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80438784_80441972
ENSMUSG00000113640.2_2	chr10	+	1425	2	NIC	ENSMUSG00000113640.2	novel	359	2	NA	NA	-39	-17	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACACCTCAAACCAAGTT	NA	False	NA	-14	True	NA	NA	NA	80439046	80443471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80439148_80442147
ENSMUSG00000113642.2_12	chr12	+	3016	3	Fusion	ENSMUSG00000113234.2_ENSMUSG00000113642.2	novel	1295	3	NA	NA	-196	-7	intron_retention	FALSE	canonical	3	7	junction_2	3.5	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACCAAGGTCTGTGA	NA	False	NA	NA	False	ATTAAA	-7	NA	18042937	18115604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_18043260_18111968_18113829_18114770
ENSMUSG00000113642.2_4	chr12	+	3705	3	Fusion	ENSMUSG00000114025.2_ENSMUSG00000113294.2	novel	1214	3	NA	NA	-284	-521	intron_retention	FALSE	canonical	3	43	junction_1	57	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTAAAAAAAAACATACT	NA	False	NA	-11	True	NA	NA	NA	17931913	17954155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_17932324_17950660_17950788_17950987
ENSMUSG00000113642.2_5	chr12	+	2715	4	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-10187	-538	intron_retention	FALSE	canonical	3	17	junction_3	60.3342541366198	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATCTAATAAAAAATTGAAA	NA	False	NA	-28	True	NA	NA	NA	17942202	17954138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_17942310_17950660_17950788_17950987_17951049_17951718
ENSMUSG00000113642.2_6	chr12	+	3406	3	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-10191	-521	intron_retention	FALSE	canonical	3	46	junction_1	55.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTAAAAAAAAACATACT	NA	False	NA	-11	True	NA	NA	NA	17942198	17954155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_17942310_17950660_17950788_17950987
ENSMUSG00000113642.2_8	chr12	+	1944	3	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-1731	-533	intron_retention	FALSE	canonical	3	95	junction_2	31	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAATTGAAATTAAA	NA	False	NA	-23	True	NA	NA	NA	17950658	17954143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_17950788_17950987_17951049_17952389
ENSMUSG00000113642.2_9	chr12	+	1066	3	Fusion	ENSMUSG00000113416.2_ENSMUSG00000113642.2_ENSMUSG00000113234.2	novel	1295	3	NA	NA	-299	17	multi-exon	FALSE	canonical	3	20	junction_2	10	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGGTCCCAGCTGAGC	NA	False	NA	35	True	AATAAA	-29	NA	18042834	18112482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_18043260_18074048_18074176_18111968
ENSMUSG00000113679.2_1	chr12	+	1129	3	ISM	ENSMUSG00000113679.2	ENSMUST00000223300.2	4791	4	13676	3518	0	-3	3prime_fragment	FALSE	canonical	2	9	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTGGTCTGAGCTCTGC	NA	False	NA	NA	False	AAAACA	-12	NA	100256543	100263649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_100256684_100261887_100261990_100262762
ENSMUSG00000113691.2_5	chr12	-	2799	4	Fusion	ENSMUSG00000113407.2_ENSMUSG00000113691.2	novel	1740	3	NA	NA	-287	646	multi-exon	FALSE	canonical	2	3	junction_1	14.522013940528	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATATAAAAAAAACATACT	NA	False	NA	NA	False	NA	NA	NA	23850934	23830211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_-_23832410_23833744_23833806_23834005_23834133_23850521
ENSMUSG00000113707.2_0	chr12	+	168	1	ISM	ENSMUSG00000113707.2	ENSMUST00000222619.2	1906	2	2052	7	2052	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAGAAAAGAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	70961084	70961252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_70961100_70961300
ENSMUSG00000113722.2_0	chr12	-	530	2	FSM	ENSMUSG00000113722.2	ENSMUST00000222812.2	527	2	-8	5	-6	-5	multi-exon	FALSE	canonical	3	45	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAAGCTGTGTGTCTCGTC	8330	False	NA	NA	False	NA	NA	NA	104998544	104996880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_104997085_104998218
ENSMUSG00000113750.2_0	chr13	+	1926	1	FSM	ENSMUSG00000113750.2	ENSMUST00000222318.2	1049	1	-260	-617	-260	617	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTAGTGCTGTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	18124232	18126158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_18124200_18126200
ENSMUSG00000113760.2_1	chr13	+	554	3	NNC	ENSMUSG00000113760.2	novel	569	4	NA	NA	-81618	-1200	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	37	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCTGTATAGTCTCATAA	NA	False	NA	NA	False	NA	NA	NA	66098404	66186861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_66098504_66186206_66186334_66186533
ENSMUSG00000113760.2_3	chr13	+	436	4	FSM	ENSMUSG00000113760.2	ENSMUST00000221828.2	569	4	-12	145	-12	-145	multi-exon	FALSE	canonical	3	110	junction_1	62.055530687352	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTAAAGCCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	66180010	66187916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_66180131_66186206_66186334_66186533_66186595_66187788
ENSMUSG00000113760.2_4	chr13	+	563	3	ISM	ENSMUSG00000113760.2	ENSMUST00000221828.2	569	4	-2	1202	-2	-1202	5prime_fragment	FALSE	canonical	3	110	junction_1	16.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTCTGTATAGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	66180020	66186859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr13_+_66180131_66186206_66186334_66186533
ENSMUSG00000113760.2_6	chr13	+	420	4	NNC	ENSMUSG00000113760.2	novel	569	4	NA	NA	-81618	-140	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	76.460592609672	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAAGCCTTTTCCTCTCA	NA	False	NA	NA	False	NA	NA	NA	66098404	66187921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_66098504_66186206_66186334_66186533_66186595_66187788
ENSMUSG00000113778.2_0	chr12	+	2589	5	NNC	ENSMUSG00000113778.2	novel	759	2	NA	NA	-300	-32150	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	13.6816482925121	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAACACACACACACAC	NA	False	NA	NA	False	NA	NA	NA	18903540	18924354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_18903999_18920412_18920540_18920741_18920803_18922243_18923331_18923498
ENSMUSG00000113778.2_2	chr12	+	3162	3	Fusion	ENSMUSG00000113857.2_ENSMUSG00000112970.2	novel	575	3	NA	NA	-300	736	intron_retention	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACCAAGGTCTGTGA	NA	False	NA	NA	False	ATTAAA	-7	NA	18903571	18962095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_18903999_18955903_18957804_18961260
ENSMUSG00000113778.2_3	chr12	+	2411	5	NNC	ENSMUSG00000113778.2	novel	759	2	NA	NA	-238	-32014	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	13.6816482925121	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGCCTTTTCACAAATT	NA	False	NA	5	True	NA	NA	NA	18903602	18924490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_18903999_18920412_18920540_18920741_18920803_18922243_18922627_18923046
ENSMUSG00000113786.2_0	chr12	-	576	2	ISM	ENSMUSG00000020973.8	ENSMUST00000021356.6	3390	3	5601	753	5601	-753	3prime_fragment	FALSE	canonical	3	278	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACAGGTTGTTTGTGTTT	2379	False	NA	-3	True	AGTAAA	-15	NA	69239602	69236613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_69237169_69239581
ENSMUSG00000113798.2_2	chr12	-	2894	4	Genic_Genomic	ENSMUSG00000113798.2	novel	126	1	NA	NA	-286	42837	multi-exon	FALSE	canonical	3	4	junction_1	5.79271573232759	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATATAAAAAAACATACTG	NA	False	NA	-23	True	NA	NA	NA	23239685	23196436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_23198731_23200064_23200126_23200325_23200453_23239273
ENSMUSG00000113831.2_0	chr12	-	2514	1	FSM	ENSMUSG00000113831.2	ENSMUST00000220671.2	2970	1	454	2	454	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTAGTGGAATTTTGAT	1089	False	NA	NA	False	AATAAA	-30	NA	118197845	118195331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_118195300_118197800
ENSMUSG00000113835.2_0	chr12	+	1943	2	FSM	ENSMUSG00000113835.2	ENSMUST00000220934.2	2076	2	-50	183	-50	-183	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTTATTTGAATATTT	3301	False	NA	NA	False	NA	NA	NA	105866049	105868226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_105866201_105866434
ENSMUSG00000113836.2_10	chr13	+	4676	3	FSM	ENSMUSG00000113836.2	ENSMUST00000223499.2	687	3	-50	-3939	-50	2359	multi-exon	FALSE	canonical	3	21	junction_2	28	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAATTTCGTTTAATTTTA	NA	False	NA	NA	False	AATAAA	-14	NA	62163747	62201159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_62163867_62194994_62195122_62196729
ENSMUSG00000113836.2_2	chr13	+	3664	4	Fusion	ENSMUSG00000113836.2_ENSMUSG00000113626.2	novel	419	3	NA	NA	46	1311	multi-exon	FALSE	canonical	3	11	junction_1	131.993265821489	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTGGCTAATATCTATC	NA	False	NA	NA	False	NA	NA	NA	61952125	62200111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr13_+_61952220_62194994_62195122_62195306_62195368_62196729
ENSMUSG00000113836.2_9	chr13	+	4726	4	FSM	ENSMUSG00000113836.2	ENSMUST00000220871.2	2707	4	340	-2359	-39	2359	multi-exon	FALSE	canonical	3	77	junction_1	103.747556865478	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAATTTCGTTTAATTTTA	NA	False	NA	NA	False	AATAAA	-14	NA	62163758	62201159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729
ENSMUSG00000113902.2_0	chr12	-	301	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221422.2	861	3	547	13	220	-1	multi-exon	FALSE	canonical	3	1653	junction_2	166	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAATTTAAAGTGTGAT	NA	False	NA	-10	True	AATAAA	-19	NA	101941966	101934361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_101934470_101935751_101935897_101941918
ENSMUSG00000113902.2_1	chr12	-	251	2	ISM	ENSMUSG00000113902.2	ENSMUST00000221191.2	511	3	6288	-3	6288	3	3prime_fragment	FALSE	canonical	3	1985	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAGAAGAATTTAAAGTG	NA	False	NA	-14	True	AATAAA	-15	NA	101935898	101934365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_101934470_101935751
ENSMUSG00000113902.2_2	chr12	-	298	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221191.2	511	3	220	-7	220	-1	multi-exon	FALSE	canonical	3	411	junction_2	787	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAATTTAAAGTGTGAT	NA	False	NA	-10	True	AATAAA	-19	NA	101941966	101934361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_101934470_101935751_101935894_101941918
ENSMUSG00000113948.2_0	chr12	+	614	1	FSM	ENSMUSG00000113948.2	ENSMUST00000221295.2	556	1	-35	-23	-35	23	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67557494	67558108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_67557500_67558100
ENSMUSG00000113949.2_1	chr10	+	1757	7	NIC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	238.087285581477	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	80438726	80451617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80438784_80444636_80444685_80445163_80445259_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000113949.2_2	chr10	+	1791	7	FSM	ENSMUSG00000113949.2	ENSMUST00000079883.12	1804	7	13	0	1	0	multi-exon	FALSE	canonical	3	584	junction_5	41.6239781322684	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	80438726	80451617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000113949.2_9	chr10	+	4280	7	NIC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	1	0	intron_retention	TRUE	canonical	3	56	junction_1	229.039601136766	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	80438726	80451617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_80438784_80442147_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000113955.2_0	chr13	-	471	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-6953	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	204	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTAGCATGCCTTCGTTC	NA	False	NA	NA	False	NA	NA	NA	65651560	65639608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_65639775_65644415_65644605_65651444
ENSMUSG00000113957.2_3	chr12	+	2250	5	NNC	ENSMUSG00000113957.2	novel	232	2	NA	NA	-286	11409	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	19.5512147960172	2	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAACTCTATGAATGTA	NA	False	NA	NA	False	NA	NA	NA	19656643	19684495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_19657056_19674223_19674351_19674551_19674613_19675941_19676806_19683709
ENSMUSG00000113959.2_2	chr12	+	2823	1	FSM	ENSMUSG00000113959.2	ENSMUST00000222720.2	3539	1	1464	-748	1464	748	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCTAACTCCTTGTATTT	NA	False	NA	5	True	AATAAA	-6	NA	19353117	19355940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_19353100_19355900
ENSMUSG00000114003.2_0	chr13	+	864	1	FSM	ENSMUSG00000114003.2	ENSMUST00000221154.2	781	1	-13	-70	-13	70	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAACAGCATGGTGAAAGT	NA	False	NA	NA	False	NA	NA	NA	3348873	3349737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_3348900_3349700
ENSMUSG00000114004.2_0	chr10	+	3947	2	FSM	ENSMUSG00000078440.11_ENSMUSG00000114004.2	ENSMUST00000156229.3	621	2	-2910	-416	-1604	284	multi-exon	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATCCAAGTGCCATGACC	NA	False	NA	NA	False	ATTAAA	-11	NA	81223234	81227385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_81226419_81226622
ENSMUSG00000114025.2_0	chr12	+	2379	4	Fusion	ENSMUSG00000114025.2_ENSMUSG00000113294.2	novel	1214	3	NA	NA	-299	-521	intron_retention	FALSE	canonical	3	43	junction_1	46.5999523128035	142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTAAAAAAAAACATACT	NA	False	NA	-11	True	NA	NA	NA	17931898	17954155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_17932324_17950660_17950788_17950987_17951049_17952389
ENSMUSG00000114025.2_5	chr12	+	2064	4	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-10191	-522	intron_retention	FALSE	canonical	3	46	junction_1	45.4190366354119	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAATTAAAAAAAAACATAC	NA	False	NA	-12	True	NA	NA	NA	17942198	17954154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_17942310_17950660_17950788_17950987_17951049_17952389
ENSMUSG00000114041.3_1	chr12	+	1749	4	Fusion	ENSMUSG00000113964.2_ENSMUSG00000114041.3	novel	567	4	NA	NA	-291	729	intron_retention	FALSE	canonical	1	2	junction_2	4.49691252107735	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCTAATAAACCAAGGTCT	NA	False	NA	NA	False	ATTAAA	-3	NA	20246625	20328758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_20247044_20325015_20325414_20326835_20326942_20327931
ENSMUSG00000114041.3_13	chr12	+	2671	2	NIC	ENSMUSG00000114041.3	novel	567	4	NA	NA	58	729	intron_retention	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCTAATAAACCAAGGTCT	NA	False	NA	NA	False	ATTAAA	-3	NA	20325097	20328758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_20326942_20327931
ENSMUSG00000114041.3_3	chr12	+	3173	3	Fusion	ENSMUSG00000113964.2_ENSMUSG00000114041.3	novel	567	4	NA	NA	-288	734	intron_retention	FALSE	canonical	2	8	junction_1	2.5	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACCAAGGTCTGTGAG	NA	False	NA	NA	False	ATTAAA	-8	NA	20246628	20328763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_20247044_20325015_20326942_20327931
ENSMUSG00000114045.2_1	chr12	-	236	1	FSM	ENSMUSG00000114045.2	ENSMUST00000223001.2	2709	1	42	2431	42	-2431	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCCTGTGCTTGATTTT	7365	False	NA	-1	True	AATAAA	-16	NA	108758627	108758391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_108758400_108758600
ENSMUSG00000114120.2_0	chr12	-	2742	2	ISM	ENSMUSG00000114120.2	ENSMUST00000220456.2	578	3	-26	-742	-26	742	intron_retention	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTCTGTGAGATTCCCAT	NA	False	NA	NA	False	NA	NA	NA	24358278	24352065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_24352905_24356375
ENSMUSG00000114133.2_0	chr13	-	2099	1	FSM	ENSMUSG00000114133.2	ENSMUST00000220449.2	2161	1	34	28	34	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGTACAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96217850	96215751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_96215800_96217800
ENSMUSG00000114144.2_1	chr12	-	1696	4	Fusion	ENSMUSG00000114144.2_ENSMUSG00000113407.2	novel	546	3	NA	NA	-288	738	multi-exon	FALSE	canonical	0	0	junction_2	3.77123616632825	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACCAAGGTCTGTGA	NA	False	NA	NA	False	ATTAAA	-7	NA	23850935	23782778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_-_23783613_23784530_23784637_23786065_23786408_23850521
ENSMUSG00000114184.2_0	chr12	-	398	1	FSM	ENSMUSG00000114184.2	ENSMUST00000222811.2	859	1	502	-41	502	41	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAATAAATA	7005	False	NA	NA	False	AATAAA	-17	NA	102833246	102832848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_102832800_102833200
ENSMUSG00000114210.3_0	chr18	-	174	1	ISM	ENSMUSG00000114210.3	ENSMUST00000224731.3	3431	2	3081	762	3081	-762	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	65018481	65018307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_65018300_65018500
ENSMUSG00000114226.2_3	chr13	+	2137	5	NNC	ENSMUSG00000114226.2	novel	818	2	NA	NA	-24302	474	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	17.0202085768653	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCTGGAAATAAAGTTTC	NA	False	NA	NA	False	AATAAA	-21	NA	66901202	66927680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_66901313_66924718_66924862_66925311_66925946_66926302_66927256_66927383
ENSMUSG00000114226.2_4	chr13	+	1598	5	NNC	ENSMUSG00000114226.2	novel	818	2	NA	NA	-24292	472	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	16.2692194035239	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAACCTGGAAATAAAGTT	NA	False	NA	NA	False	AATAAA	-19	NA	66901212	66927678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_66901313_66924718_66924862_66925311_66925946_66926829_66927256_66927383
ENSMUSG00000114251.2_0	chr13	-	1286	1	FSM	ENSMUSG00000114251.2	ENSMUST00000224867.2	660	1	7	-633	7	633	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	36175496	36174210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_36174200_36175500
ENSMUSG00000114327.2_0	chr13	+	1002	4	NNC	ENSMUSG00000114327.2	novel	818	2	NA	NA	102	115292	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_3	17.9876500843094	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGAACTGTTTTTCTAG	NA	False	NA	NA	False	NA	NA	NA	66829119	66972313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_66829202_66843359_66843401_66843752_66843820_66971501
ENSMUSG00000114353.2_11	chr13	-	3731	3	NIC	ENSMUSG00000114353.2	novel	464	4	NA	NA	0	879	intron_retention	FALSE	canonical	3	157	junction_2	3	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	-4	True	NA	NA	NA	66950624	66939254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_66942763_66942962_66943090_66950528
ENSMUSG00000114353.2_4	chr13	-	2374	5	NNC	ENSMUSG00000114353.2	novel	464	4	NA	NA	0	879	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	67.8762661023719	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	-4	True	NA	NA	NA	66950624	66939254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_66940626_66940876_66941596_66942701_66942763_66942962_66943090_66950528
ENSMUSG00000114353.2_6	chr13	-	2625	4	FSM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	-2161	0	879	multi-exon	FALSE	canonical	3	149	junction_1	5.73488351136175	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	-4	True	NA	NA	NA	66950624	66939254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_66941596_66942701_66942763_66942962_66943090_66950528
ENSMUSG00000114426.2_0	chr13	+	2480	4	NNC	ENSMUSG00000114426.2	novel	1561	3	NA	NA	-9011	719	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	41.3548331180555	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGACTTAGCTCCATT	5534	False	NA	9	True	NA	NA	NA	66711973	66724694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_66712084_66720982_66721110_66721308_66721370_66722512
ENSMUSG00000114442.2_0	chr13	+	2742	2	FSM	ENSMUSG00000114442.2	ENSMUST00000224844.2	4257	2	-2	1517	-2	-1517	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCTTGAGTGAGCAGGAT	NA	False	NA	NA	False	AATAAA	-15	NA	67426638	67429908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_67426670_67427197
ENSMUSG00000114470.2_0	chr13	-	369	1	NIC	ENSMUSG00000114470.2	novel	645	4	NA	NA	12900	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTCTAGTTCGAGTTA	NA	False	NA	-2	True	AATAAA	-21	NA	115225260	115224891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_115224900_115225300
ENSMUSG00000114500.2_0	chr14	+	1700	1	FSM	ENSMUSG00000114500.2	ENSMUST00000224747.2	943	1	-308	-449	-308	449	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGTCAAAAAAAAAAATGTT	NA	False	NA	NA	False	AATAAA	-9	NA	57102561	57104261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_57102600_57104300
ENSMUSG00000114501.2_0	chr13	+	2420	1	FSM	ENSMUSG00000114501.2	ENSMUST00000225376.2	6429	1	973	3036	973	-3036	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	9186	False	NA	NA	False	NA	NA	NA	60771753	60774173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_60771800_60774200
ENSMUSG00000114547.2_0	chr13	-	1582	1	FSM	ENSMUSG00000114547.2	ENSMUST00000225150.2	1342	1	-89	-151	-89	151	mono-exon	FALSE	NA	NA	NA	NA	NA	423	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAGAAAAAAAAATAC	NA	False	NA	NA	False	AGTAAA	-7	NA	112731707	112730125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_112730100_112731700
ENSMUSG00000114616.2_0	chr13	+	549	4	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	-62	127	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	24.2257897474755	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATGCCTTGGTTCCA	NA	False	NA	NA	False	NA	NA	NA	66392021	66599465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_66392214_66448255_66448445_66453083_66453217_66599430
ENSMUSG00000114616.2_6	chr13	+	530	4	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47329	125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	25.1705295048705	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTAGCATGCCTTGGTTC	NA	False	NA	NA	False	NA	NA	NA	66439412	66599463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_66439588_66448255_66448445_66453083_66453217_66599430
ENSMUSG00000114665.2_0	chr13	+	960	2	FSM	ENSMUSG00000114665.2	ENSMUST00000225065.2	756	2	-54	-150	-54	8	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGTCAGTCATGTCCTT	NA	False	NA	NA	False	NA	NA	NA	37726876	37732424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_37727169_37731756
ENSMUSG00000114689.2_0	chr13	-	695	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1160	-6	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	24.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAATCCTCCTCCATCTT	NA	False	NA	-12	True	ATTAAA	-17	NA	98854178	98849587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_98850076_98852942_98853093_98854121
ENSMUSG00000114689.2_1	chr13	-	1608	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1159	-8	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	22.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATACAATCCTCCTCCATC	NA	False	NA	-14	True	ATTAAA	-15	NA	98854177	98849589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_98850076_98852942_98853093_98853205
ENSMUSG00000114689.2_5	chr13	-	634	2	FSM	ENSMUSG00000114689.2	ENSMUST00000224536.2	570	2	-70	6	-70	-6	multi-exon	FALSE	canonical	3	71	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAATCCTCCTCCATCTT	NA	False	NA	-12	True	ATTAAA	-17	NA	98853088	98849587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_98850076_98852942
ENSMUSG00000114777.2_0	chr13	+	3069	4	NNC	ENSMUSG00000114777.2	novel	1568	3	NA	NA	-6328	1389	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	16.0069429380573	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	66667714	66678797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_+_66667826_66674049_66674177_66674374_66674436_66676027
ENSMUSG00000114797.2_0	chr14	-	2007	1	ISM	ENSMUSG00000114797.2	ENSMUST00000041905.8	3913	15	31423	0	12053	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGTAGGTCTCAGCA	NA	False	NA	-16	True	AATAAA	-18	NA	60457533	60455526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_60455500_60457500
ENSMUSG00000114797.2_1	chr14	-	3825	15	FSM	ENSMUSG00000114797.2	ENSMUST00000041905.8	3913	15	88	0	-13	0	multi-exon	FALSE	canonical	3	173	junction_2	25.178546099278	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGTAGGTCTCAGCA	NA	False	NA	-16	True	AATAAA	-18	NA	60488868	60455526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_60457608_60459031_60459128_60460765_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
ENSMUSG00000114797.2_27	chr14	-	3563	1	ISM	ENSMUSG00000114797.2	ENSMUST00000223596.2	4987	2	4587	0	4587	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAATAAAACATTGTC	NA	False	NA	NA	False	NA	NA	NA	60464999	60461436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_-_60461400_60465000
ENSMUSG00000114816.2_54	chr13	-	2387	1	Genic_Genomic	ENSMUSG00000114816.2	novel	NA	NA	NA	NA	3134	300	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGACTTAGCTCCATT	NA	False	NA	0	True	NA	NA	NA	66999801	66997414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_66997400_66999800
ENSMUSG00000114826.3_0	chr12	+	3476	1	FSM	ENSMUSG00000114826.3	ENSMUST00000232932.2	4429	1	4	949	4	-679	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGTGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	104439593	104443069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_104439600_104443100
ENSMUSG00000114902.2_0	chr14	+	1410	2	Genic_Genomic	ENSMUSG00000114902.2	novel	864	1	NA	NA	-1751	146	multi-exon	FALSE	canonical	2	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACCAAACCTGTTGCTT	NA	False	NA	NA	False	AATAAA	-21	NA	61794495	61797256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_+_61794890_61796240
ENSMUSG00000114923.2_0	chr13	-	4746	4	FSM	ENSMUSG00000114923.2	ENSMUST00000224814.2	2103	4	76	-2719	60	2719	multi-exon	FALSE	canonical	3	12	junction_3	22.0957512255687	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGGTTTGGTGTCTCTT	NA	False	NA	-5	True	NA	NA	NA	67785812	67737558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_67742035_67743334_67743431_67744767_67744895_67785765
ENSMUSG00000114936.2_0	chr13	+	1533	1	FSM	ENSMUSG00000114936.2	ENSMUST00000224038.2	2340	1	-985	1792	-985	-1792	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGTGGTGGATTCTGTT	NA	False	NA	NA	False	AGTAAA	-19	NA	40875600	40877133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_40875600_40877100
ENSMUSG00000115007.2_0	chr14	-	794	1	FSM	ENSMUSG00000115007.2	ENSMUST00000228874.2	1299	1	-2	507	-2	-507	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGATTGTTTGTTTTGGTT	8021	False	NA	NA	False	AATAAA	-18	NA	34395722	34394928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_34394900_34395700
ENSMUSG00000115009.2_1	chr15	-	2777	5	NNC	ENSMUSG00000115009.2	novel	2819	5	NA	NA	-116	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	3.11247489949718	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTGATGTTTGGCCTAT	NA	False	NA	NA	False	NA	NA	NA	38455494	38436469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_-_38438614_38445370_38445501_38453402_38453648_38454915_38455060_38455380
ENSMUSG00000115018.3_0	chr2	-	2351	1	FSM	ENSMUSG00000115018.3	ENSMUST00000228627.3	2045	1	-307	1	-307	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTACCTCTGCCATCCT	NA	False	NA	NA	False	AATAAA	-18	NA	25137182	25134831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_25134800_25137200
ENSMUSG00000115070.2_2	chr15	+	2573	1	FSM	ENSMUSG00000115070.2	ENSMUST00000227396.2	1774	1	-61	-738	-61	738	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAGA	-38	NA	38853567	38856140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_38853600_38856100
ENSMUSG00000115092.2_10	chr14	+	3992	1	Genic_Genomic	ENSMUSG00000115092.2	novel	NA	NA	NA	NA	1597	1458	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76765652	76769644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_+_76765700_76769600
ENSMUSG00000115092.2_7	chr14	+	645	4	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10613	2	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	4.24264068711928	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACACGCCACCCTCCTG	NA	False	NA	8	True	AATAAA	-24	NA	76753418	76768188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_76753538_76764032_76764202_76766569_76766669_76767930
ENSMUSG00000115109.2_0	chr14	-	403	1	FSM	ENSMUSG00000115109.2	ENSMUST00000228194.2	1100	1	679	18	679	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTTCTTACCTTGAATA	NA	False	NA	NA	False	AATAAA	-18	NA	34491333	34490930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_34490900_34491300
ENSMUSG00000115199.2_0	chr6	+	134	1	FSM	ENSMUSG00000115199.2	ENSMUST00000228297.2	2021	1	1146	741	1146	-741	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAGCTACAGTGTATTTA	NA	False	NA	NA	False	NA	NA	NA	57236082	57236216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_57236100_57236200
ENSMUSG00000115219.3_0	chr16	+	973	3	FSM	ENSMUSG00000115219.3	ENSMUST00000115522.10	1134	3	7	154	-1	-12	multi-exon	FALSE	canonical	3	220	junction_2	23	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGATCCCAGGTTTCTG	5906	False	NA	8	True	AATACA	-18	NA	20430349	20437607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_20430571_20436375_20436660_20437139
ENSMUSG00000115222.2_0	chr14	+	2738	1	FSM	ENSMUSG00000115222.2	ENSMUST00000228007.2	2749	1	7	4	7	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCTTGGTCCTGGTG	NA	False	NA	NA	False	NA	NA	NA	55881067	55883805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_55881100_55883800
ENSMUSG00000115276.2_0	chr15	+	3354	1	FSM	ENSMUSG00000115276.2	ENSMUST00000228274.2	3745	1	-525	916	-525	-916	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	2844	False	NA	NA	False	AATAGA	-22	NA	34126564	34129918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_34126600_34129900
ENSMUSG00000115293.3_16	chr16	+	1958	11	ISM	ENSMUSG00000022842.19	ENSMUST00000133344.8	3042	18	8827	-4	-528	4	3prime_fragment	FALSE	canonical	3	19	junction_10	6.928924880528	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGTCTCTTCCTTCAGT	NA	False	NA	17	True	AATAAA	-17	NA	20457427	20464669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090_20463187_20463809
ENSMUSG00000115312.2_0	chr14	-	684	1	FSM	ENSMUSG00000115312.2	ENSMUST00000228819.2	490	1	50	-244	50	244	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACCTCTATTTAGTAGGA	2893	False	NA	NA	False	NA	NA	NA	51216343	51215659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_51215700_51216300
ENSMUSG00000115313.2_0	chr14	-	2391	3	NNC	ENSMUSG00000115313.2	novel	429	3	NA	NA	655	-13738	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACGGTCTCCGTGTCGTT	NA	False	NA	NA	False	NA	NA	NA	90322673	90315936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_90316152_90316292_90318195_90322399
ENSMUSG00000115313.2_12	chr14	-	2392	3	NNC	ENSMUSG00000115313.2	novel	429	3	NA	NA	656	-13744	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCAGAACGGTCTCCGT	NA	False	NA	NA	False	NA	NA	NA	90322672	90315942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_90316160_90316292_90318195_90322399
ENSMUSG00000115313.2_14	chr14	-	2392	3	NNC	ENSMUSG00000115313.2	novel	429	3	NA	NA	656	-13748	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAACTTCAGAACGGTCT	NA	False	NA	NA	False	NA	NA	NA	90322672	90315946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_90316164_90316292_90318195_90322399
ENSMUSG00000115313.2_18	chr14	-	2488	3	NNC	ENSMUSG00000115313.2	novel	429	3	NA	NA	657	-13744	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11	2	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCAGAACGGTCTCCGT	NA	False	NA	NA	False	NA	NA	NA	90322671	90315942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_90316257_90316292_90318195_90322399
ENSMUSG00000115313.2_2	chr14	-	2387	3	NNC	ENSMUSG00000115313.2	novel	429	3	NA	NA	656	-13738	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACGGTCTCCGTGTCGTT	NA	False	NA	NA	False	NA	NA	NA	90322672	90315936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_90316149_90316292_90318195_90322399
ENSMUSG00000115313.2_6	chr14	-	2531	2	NNC	ENSMUSG00000115313.2	novel	429	3	NA	NA	656	-13738	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	0	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACGGTCTCCGTGTCGTT	NA	False	NA	NA	False	NA	NA	NA	90322672	90315936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_90318195_90322399
ENSMUSG00000115313.2_8	chr14	-	2392	3	NNC	ENSMUSG00000115313.2	novel	429	3	NA	NA	656	-13740	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGAACGGTCTCCGTGTCG	NA	False	NA	NA	False	NA	NA	NA	90322672	90315938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_90316156_90316292_90318195_90322399
ENSMUSG00000115338.3_1	chr14	+	1317	6	FSM	ENSMUSG00000115338.3	ENSMUST00000048615.13	2942	6	225	1400	4	1118	multi-exon	FALSE	canonical	3	117	junction_1	38.2015706483385	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTGTGTGGTTCGGTA	9255	False	NA	5	True	AATAAA	-17	NA	51181983	51189469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_51182051_51185308_51185479_51187714_51187819_51187999_51188176_51188288_51188480_51188860
ENSMUSG00000115338.3_5	chr14	+	1248	5	ISM	ENSMUSG00000115338.3	ENSMUST00000048615.13	2942	6	3550	1402	3291	1116	3prime_fragment	FALSE	canonical	3	155	junction_4	31.3956605281685	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTGTGTGTGGTTCGG	NA	False	NA	3	True	AATAAA	-15	NA	51185308	51189467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr14_+_51185479_51187714_51187819_51187999_51188176_51188288_51188480_51188860
ENSMUSG00000115423.3_0	chr2	-	597	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	223	124	223	-124	multi-exon	FALSE	canonical	3	323	junction_1	8.5	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATTGTCTGAAACCACTT	NA	False	NA	-3	True	AATAAA	-40	NA	136733086	136723314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_136723560_136727392_136727621_136732962
ENSMUSG00000115431.2_0	chr14	+	324	1	FSM	ENSMUSG00000115431.2	ENSMUST00000226608.2	303	1	3	-24	3	24	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTCCAGGGGCCCCTT	NA	False	NA	NA	False	NA	NA	NA	34067240	34067564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_34067200_34067600
ENSMUSG00000115483.2_14	chr14	+	1424	4	FSM	ENSMUSG00000115483.2	ENSMUST00000228505.2	1591	4	-178	345	4	-338	multi-exon	FALSE	canonical	3	45	junction_2	11.5854314646552	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	43132496	43163123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_43132821_43157302_43157435_43158114_43158297_43162337
ENSMUSG00000115483.2_16	chr14	+	1256	3	NIC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-10	-338	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	29.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	43132482	43163123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_43132821_43157302_43157435_43162337
ENSMUSG00000115497.2_0	chr15	+	190	1	FSM	ENSMUSG00000115497.2	ENSMUST00000228223.2	279	1	71	18	71	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGGCAAAAAAAAAAAATA	NA	False	NA	-12	True	AGTAAA	-10	NA	7790265	7790455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_7790300_7790500
ENSMUSG00000115664.2_0	chr14	-	173	1	Genic_Genomic	ENSMUSG00000115664.2	novel	NA	NA	NA	NA	6034	64	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTTTTAAAAAAGAAGAT	NA	False	NA	NA	False	NA	NA	NA	86640501	86640328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_-_86640300_86640500
ENSMUSG00000115691.2_0	chr14	-	3996	2	NNC	ENSMUSG00000115691.2	novel	1833	2	NA	NA	10692	2158	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAGAGTCTTATTTCTT	NA	False	NA	-3	True	ATTAAA	-20	NA	32029250	32023460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_-_32027353_32029146
ENSMUSG00000115737.2_0	chr14	-	1770	3	FSM	ENSMUSG00000115737.2	ENSMUST00000226439.2	1758	3	-22	10	-22	-10	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAAGATTGTATTG	NA	False	NA	NA	False	AATAAA	-11	NA	49360191	49349587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_49351160_49359878_49360008_49360122
ENSMUSG00000115783.2_0	chr7	+	139	1	FSM	ENSMUSG00000115783.2	ENSMUST00000227063.2	168	1	2	27	2	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACAACCTTTTTCATTT	NA	False	NA	NA	False	NA	NA	NA	144468208	144468347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_144468200_144468300
ENSMUSG00000115810.2_0	chr15	+	836	1	FSM	ENSMUSG00000115810.2	ENSMUST00000226643.2	799	1	-38	1	-38	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTGCCATATTTTAGT	NA	False	NA	NA	False	AATAAA	-17	NA	73295121	73295957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_73295100_73296000
ENSMUSG00000115867.2_0	chr15	-	1212	2	ISM	ENSMUSG00000115867.2	ENSMUST00000229708.2	1561	3	-2	881	-2	5	5prime_fragment	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTTTGTTTTGTTT	NA	False	NA	NA	False	AATGAA	-20	NA	78909984	78900409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_-_78901333_78909695
ENSMUSG00000115918.2_0	chr15	-	704	1	Genic_Genomic	ENSMUSG00000115918.2	novel	NA	NA	NA	NA	5393	1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86353903	86353199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_86353200_86353900
ENSMUSG00000115920.2_0	chr15	-	159	1	FSM	ENSMUSG00000115920.2	ENSMUST00000230695.2	1356	1	57	1140	57	-1140	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAATAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	76819203	76819044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76819000_76819200
ENSMUSG00000115938.2_0	chr15	-	307	1	FSM	ENSMUSG00000115938.2	ENSMUST00000230504.2	252	1	0	-55	0	55	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	99604694	99604387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_99604400_99604700
ENSMUSG00000115958.2_0	chr1	+	579	3	NIC	ENSMUSG00000115958.2	novel	656	3	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	18	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5610	False	NA	4	True	AATAAA	-16	NA	133251705	133257460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_133251787_133254947_133255079_133257093
ENSMUSG00000115971.2_0	chr15	+	2004	2	FSM	ENSMUSG00000115971.2	ENSMUST00000230701.2	2556	2	27	525	27	-525	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACCCAGTTCCCCAGACA	NA	False	NA	NA	False	NA	NA	NA	79727390	79730439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_79727458_79728502
ENSMUSG00000115987.2_0	chr15	-	893	10	FSM	ENSMUSG00000115987.2	ENSMUST00000078803.5	911	10	18	0	-3	0	multi-exon	TRUE	canonical	3	892	junction_9	85.8889607589177	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9621	False	NA	-25	True	AATAAA	-17	NA	76510256	76506308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
ENSMUSG00000115987.2_1	chr15	-	988	10	FSM	ENSMUSG00000115987.2	ENSMUST00000229019.2	941	10	-47	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	311.796586112021	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9624	False	NA	-25	True	AATAAA	-17	NA	76510253	76506308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508919_76509333_76509406_76510188
ENSMUSG00000115987.2_6	chr15	-	1491	9	NIC	ENSMUSG00000115987.2	novel	911	10	NA	NA	5	-1	intron_retention	FALSE	canonical	3	892	junction_8	91.0971322270904	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTGTGGGCAGCTATAC	9613	False	NA	-26	True	AATAAA	-16	NA	76510264	76506309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
ENSMUSG00000116024.2_0	chr15	+	2706	5	FSM	ENSMUSG00000033669.9	ENSMUST00000023179.7	2772	5	60	6	-3	0	multi-exon	FALSE	canonical	3	69	junction_1	13.4976849866931	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAAGGTGTAGCCTGTAC	NA	False	NA	NA	False	AATAAA	-13	NA	76763518	76776589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430_76772548_76774206
ENSMUSG00000116024.2_1	chr15	+	4367	4	ISM	ENSMUSG00000033669.9	ENSMUST00000023179.7	2772	5	61	3	-2	3	intron_retention	FALSE	canonical	3	69	junction_1	14.8174071805952	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTGTAGCCTGTACTTT	NA	False	NA	NA	False	AATAAA	-16	NA	76763519	76776592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430
ENSMUSG00000116024.2_13	chr15	+	2672	4	ISM	ENSMUSG00000033669.9	ENSMUST00000230106.2	2960	5	1427	2	1401	-2	3prime_fragment	FALSE	canonical	3	76	junction_3	12.3558353285671	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTAAAGGTGTAGCCTGT	NA	False	NA	NA	False	AATAAA	-11	NA	76764935	76776587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76764983_76765311_76765439_76772430_76772548_76774206
ENSMUSG00000116024.2_15	chr15	+	2454	2	ISM	ENSMUSG00000033669.9	ENSMUST00000230106.2	2960	5	8966	2	8940	-2	3prime_fragment	FALSE	canonical	3	76	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTAAAGGTGTAGCCTGT	NA	False	NA	NA	False	AATAAA	-11	NA	76772474	76776587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_76772548_76774206
ENSMUSG00000116024.2_2	chr15	+	2704	5	NNC	ENSMUSG00000033669.9	novel	2772	5	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_3	34.1055347414463	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTAAAGGTGTAGCCTGT	NA	False	NA	NA	False	AATAAA	-11	NA	76763515	76776587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_76763554_76764938_76764983_76765311_76765439_76772433_76772548_76774206
ENSMUSG00000116024.2_3	chr15	+	2942	5	FSM	ENSMUSG00000033669.9	ENSMUST00000230106.2	2960	5	21	-3	-1	3	multi-exon	FALSE	canonical	3	16	junction_1	32.962099447699	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTGTAGCCTGTACTTT	NA	False	NA	NA	False	AATAAA	-16	NA	76763529	76776592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76763798_76764938_76764983_76765311_76765439_76772430_76772548_76774206
ENSMUSG00000116048.2_17	chr1	+	3100	12	NIC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	0	-535	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	288.167909042025	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAAATGAGTAGTCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	93406742	93437447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_93406791_93416845_93416877_93418878_93419000_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUSG00000116097.2_0	chr15	-	355	2	FSM	ENSMUSG00000116097.2	ENSMUST00000229702.2	394	2	39	0	39	0	multi-exon	FALSE	canonical	3	23	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGCTGTGGTCGGAGTAT	2892	False	NA	-3	True	NA	NA	NA	78465777	78458610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_78458873_78465684
ENSMUSG00000116114.2_0	chr15	+	2533	4	NNC	ENSMUSG00000116114.2	novel	833	4	NA	NA	-22	13	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	2.05480466765633	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTCAAAAGATCCTTTCA	901	False	NA	NA	False	AATAAA	-19	NA	101262598	101303728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_101262699_101264782_101265322_101301319_101301441_101301955
ENSMUSG00000116121.2_1	chr15	+	1954	13	NNC	ENSMUSG00000068206.14	novel	1977	13	NA	NA	14	-4	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_12	63.2966999315306	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCATGGGCTCCTTGC	4397	False	NA	14	True	AATAAA	-14	NA	79113595	79133662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132925
ENSMUSG00000116121.2_3	chr15	+	3224	11	ISM	ENSMUSG00000068206.14	ENSMUST00000018295.14	1977	13	11	2	11	-2	intron_retention	FALSE	canonical	3	173	junction_9	27.9114671774882	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGGCTCCTTGCAA	4394	False	NA	16	True	AATAAA	-16	NA	79113592	79133664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464
ENSMUSG00000116138.2_0	chr15	-	1745	3	FSM	ENSMUSG00000116138.2	ENSMUST00000036247.10	1754	3	8	1	8	0	multi-exon	FALSE	canonical	3	37	junction_1	1	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCTATTGACTTTAAATG	9317	False	NA	-5	True	ATTAAA	-22	NA	76608032	76605665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76607184_76607370_76607420_76607854
ENSMUSG00000116138.2_1	chr15	-	2180	2	FSM	ENSMUSG00000033707.10_ENSMUSG00000116138.2	ENSMUST00000230559.2	740	2	-447	-993	8	0	multi-exon	FALSE	canonical	3	37	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCTATTGACTTTAAATG	9317	False	NA	-5	True	ATTAAA	-22	NA	76608032	76605665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76607184_76607370
ENSMUSG00000116138.2_4	chr15	-	166	1	FSM	ENSMUSG00000116138.2	ENSMUST00000230372.2	2364	1	2209	-11	1754	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCTATTGACTTTAAATG	9217	False	NA	-5	True	ATTAAA	-22	NA	76605831	76605665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_76605700_76605800
ENSMUSG00000116160.2_0	chr15	+	2524	2	FSM	ENSMUSG00000116160.2	ENSMUST00000229356.2	632	2	-9	-1883	-9	1883	multi-exon	FALSE	canonical	3	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTTTGAGTGTTTGTGT	NA	False	NA	NA	False	AATAAA	-11	NA	96395773	96398652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_96395869_96396223
ENSMUSG00000116165.2_0	chr15	+	1984	2	FSM	ENSMUSG00000116165.2	ENSMUST00000089378.5	2001	2	17	0	17	0	multi-exon	FALSE	canonical	3	228	junction_1	0	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTGTGTGTGTGTGCC	NA	False	NA	24	True	AATAAA	-18	NA	78798135	78803717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_78798732_78802329
ENSMUSG00000116165.2_1	chr15	+	1180	1	ISM	ENSMUSG00000116165.2	ENSMUST00000089378.5	2001	2	4419	0	4419	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTGTGTGTGTGTGCC	NA	False	NA	24	True	AATAAA	-18	NA	78802537	78803717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr15_+_78802500_78803700
ENSMUSG00000116207.2_12	chr13	-	3236	16	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	4213	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	56.4381273805415	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTGATGTAGCTTCG	NA	False	NA	NA	False	AATAAA	-8	NA	119541275	119472072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511282_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087
ENSMUSG00000116223.2_2	chr15	+	675	2	FSM	ENSMUSG00000116223.2	ENSMUST00000229156.2	1345	2	-236	906	-236	185	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGACCAGCACAGAAAGCA	1110	False	NA	NA	False	NA	NA	NA	98831969	98837528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_98832301_98837184
ENSMUSG00000116238.2_0	chr15	+	169	1	FSM	ENSMUSG00000116238.2	ENSMUST00000230810.2	3039	1	2629	241	2629	-241	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATATTAAAAAAAAA	7198	False	NA	NA	False	NA	NA	NA	76464653	76464822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_76464700_76464800
ENSMUSG00000116275.2_0	chr1	-	1348	1	ISM	ENSMUSG00000102976.7	ENSMUST00000191896.6	4396	18	40100	9	6014	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133548956	133547608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133547600_133549000
ENSMUSG00000116275.2_1	chr1	-	5788	16	ISM	ENSMUSG00000094410.9	ENSMUST00000179598.4	10156	17	5747	-67	5747	67	intron_retention	FALSE	canonical	3	293	junction_13	50.7709453219938	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATCCTTAGTTCTTATC	NA	False	NA	-10	True	AATAAA	-10	NA	133583309	133547610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710
ENSMUSG00000116275.2_12	chr1	-	3825	13	ISM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	20690	7	20690	-7	3prime_fragment	FALSE	canonical	3	328	junction_9	48.2633832907171	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAGGAAATCCTTAGTTC	NA	False	NA	-15	True	AATAAA	-5	NA	133568428	133547615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349
ENSMUSG00000116275.2_13	chr1	-	2762	6	ISM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	34428	1	34428	-1	3prime_fragment	FALSE	canonical	3	398	junction_3	35.0051424793558	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATCCTTAGTTCTTATCA	NA	False	NA	-9	True	AATAAA	-11	NA	133554690	133547609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504
ENSMUSG00000116275.2_14	chr1	-	3338	9	ISM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	23933	1	23933	-1	3prime_fragment	FALSE	canonical	3	379	junction_7	37.1475100107665	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATCCTTAGTTCTTATCA	NA	False	NA	-9	True	AATAAA	-11	NA	133565185	133547609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086
ENSMUSG00000116275.2_17	chr1	-	4041	15	ISM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	13994	7	13994	-7	3prime_fragment	FALSE	canonical	3	293	junction_13	51.9081311706813	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAGGAAATCCTTAGTTC	NA	False	NA	-15	True	AATAAA	-5	NA	133575124	133547615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073
ENSMUSG00000116275.2_2	chr1	-	2316	4	ISM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	36748	0	36748	0	3prime_fragment	FALSE	canonical	3	398	junction_3	40.8438761899776	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133552370	133547608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220
ENSMUSG00000116275.2_20	chr1	-	3952	14	ISM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	15574	5	15574	-5	3prime_fragment	FALSE	canonical	3	293	junction_13	53.8499998626472	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGAAATCCTTAGTTCTT	NA	False	NA	-13	True	AATAAA	-7	NA	133573544	133547613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464
ENSMUSG00000116275.2_4	chr1	-	4381	17	FSM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	9	5	9	-5	multi-exon	FALSE	canonical	3	37	junction_16	98.6493157604248	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGAAATCCTTAGTTCTT	NA	False	NA	-13	True	AATAAA	-7	NA	133589109	133547613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588974
ENSMUSG00000116295.2_1	chr15	-	176	1	Genic_Genomic	ENSMUSG00000116295.2	novel	NA	NA	NA	NA	10030	12	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACAGCAAG	880	False	NA	NA	False	NA	NA	NA	97055073	97054897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_97054900_97055100
ENSMUSG00000116295.2_12	chr15	-	1564	3	NIC	ENSMUSG00000116295.2	novel	655	3	NA	NA	0	925	combination_of_known_junctions	FALSE	canonical	3	219	junction_1	28	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTTTGCTTTCTATTCA	NA	False	NA	-21	True	NA	NA	NA	97065125	97057888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_97059277_97064383_97064492_97065057
ENSMUSG00000116295.2_3	chr15	-	1721	4	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	-6	932	combination_of_known_junctions	FALSE	canonical	3	708	junction_3	16.5797734872612	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTCTATTCACTGTTGC	NA	False	NA	-14	True	NA	NA	NA	97065131	97057881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_97059277_97059835_97059964_97064383_97064508_97065057
ENSMUSG00000116295.2_5	chr15	-	905	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229999.2	510	4	-1	-394	0	138	multi-exon	FALSE	canonical	3	275	junction_3	214.206027511418	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97065125	97058675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_97059277_97059835_97059964_97064383_97064492_97065057
ENSMUSG00000116295.2_7	chr15	-	971	3	FSM	ENSMUSG00000116295.2	ENSMUST00000231024.2	655	3	0	-316	0	316	multi-exon	FALSE	canonical	3	219	junction_1	244.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACCCCAGAGCTATTACT	NA	False	NA	NA	False	NA	NA	NA	97065125	97058497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_-_97059277_97064383_97064508_97065057
ENSMUSG00000116347.2_0	chr19	+	3859	5	Fusion	ENSMUSG00000071652.9_ENSMUSG00000071653.10	novel	500	5	NA	NA	4	-7	multi-exon	FALSE	canonical	0	0	junction_4	1396.00770055183	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAACAGTCCAGTGTTT	NA	False	NA	13	True	AATAAA	-14	NA	8866266	8875245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774_8868226_8872122
ENSMUSG00000116395.2_0	chr15	+	160	1	FSM	ENSMUSG00000116395.2	ENSMUST00000229927.2	2437	1	1939	338	1939	-338	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAGATAATTCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	101215921	101216081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_101215900_101216100
ENSMUSG00000116461.2_0	chr15	-	2267	8	NIC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	9	0	intron_retention	FALSE	canonical	3	290	junction_3	37.3352161818696	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1189	False	NA	NA	False	AATAAA	-23	NA	89314093	89310569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89313031_89313251
ENSMUSG00000116469.2_3	chr16	+	1690	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	53041	934	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTCCCTAGTCTTCACT	6150	False	NA	11	True	AATAAA	-21	NA	8951049	8956242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_8951217_8953545_8953645_8954818
ENSMUSG00000116508.2_0	chr15	+	2429	1	FSM	ENSMUSG00000116508.2	ENSMUST00000231106.2	2459	1	6	24	6	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAATAAATCTAAAAA	NA	False	NA	NA	False	NA	NA	NA	83056556	83058985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_83056600_83059000
ENSMUSG00000116537.2_0	chr12	+	3906	3	Fusion	ENSMUSG00000116537.2_ENSMUSG00000112951.3	novel	739	2	NA	NA	-300	2853	multi-exon	TRUE	non_canonical	0	0	junction_2	13.5	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAATCAAATAAACCAA	NA	False	NA	NA	False	NA	NA	NA	20465637	20512065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_20466065_20508554_20511090_20511121
ENSMUSG00000116537.2_1	chr12	+	3938	2	Fusion	ENSMUSG00000116537.2_ENSMUSG00000112951.3	novel	739	2	NA	NA	-300	2853	multi-exon	FALSE	canonical	3	27	junction_1	0	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAATCAAATAAACCAA	NA	False	NA	NA	False	NA	NA	NA	20465637	20512065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_20466065_20508554
ENSMUSG00000116560.2_0	chr17	-	7276	5	ISM	ENSMUSG00000116560.2	ENSMUST00000231996.2	3159	6	3117	-4345	3117	4345	3prime_fragment	FALSE	canonical	2	12	junction_2	8.31790237980706	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATATCAATTACATGT	NA	False	NA	NA	False	AATAAA	-13	NA	6792995	6774844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_6779304_6781304_6783818_6785940_6786085_6791132_6791227_6792929
ENSMUSG00000116560.2_1	chr17	-	5049	2	ISM	ENSMUSG00000116560.2	ENSMUST00000231996.2	3159	6	14218	-4345	14218	4345	3prime_fragment	FALSE	canonical	3	32	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATATCAATTACATGT	3556	False	NA	NA	False	AATAAA	-13	NA	6781894	6774844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_6779304_6781304
ENSMUSG00000116564.2_2	chr17	+	2014	10	FSM	ENSMUSG00000116564.2	ENSMUST00000024620.8	3220	10	268	938	5	-938	multi-exon	FALSE	canonical	3	346	junction_3	38.1895855495244	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTAATGCAATCTGTAGT	NA	False	NA	1	True	AATAAA	-10	NA	17594838	17614223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
ENSMUSG00000116564.2_5	chr17	+	1595	8	FSM	ENSMUSG00000116564.2	ENSMUST00000232396.2	1596	8	-3	4	-3	-4	multi-exon	FALSE	canonical	3	346	junction_3	41.8120185826896	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAAACAAATTTGTCTTT	NA	False	NA	NA	False	AATGAA	-16	NA	17594830	17608012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
ENSMUSG00000116564.2_8	chr17	+	4231	9	NIC	ENSMUSG00000116564.2	novel	3220	10	NA	NA	5	-933	intron_retention	FALSE	canonical	3	388	junction_8	30.9553610058096	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCAATCTGTAGTTCTCT	NA	False	NA	6	True	AATAAA	-15	NA	17594838	17614228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_17594933_17597980_17598120_17598744_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
ENSMUSG00000116606.2_16	chr12	+	2301	4	Fusion	ENSMUSG00000116537.2_ENSMUSG00000116606.2_ENSMUSG00000112951.3	novel	654	4	NA	NA	-292	1036	multi-exon	FALSE	canonical	3	21	junction_3	53.2228021309163	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCATGTCTGTGAGACT	NA	False	NA	NA	False	NA	NA	NA	20465645	20510248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_20466065_20483306_20483434_20483635_20483697_20508554
ENSMUSG00000116606.2_2	chr12	+	2203	4	Fusion	ENSMUSG00000112951.3_ENSMUSG00000116606.2	novel	654	4	NA	NA	-300	1201	multi-exon	FALSE	canonical	3	59	junction_1	36.5543735033473	55	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATAGTCTCCATTATTTT	NA	False	NA	NA	False	NA	NA	NA	20465637	20486619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_20466065_20483306_20483434_20483635_20483697_20485031
ENSMUSG00000116606.2_21	chr12	+	1880	4	FSM	ENSMUSG00000116606.2	ENSMUST00000232483.2	654	4	-28	-1198	-28	1198	multi-exon	FALSE	canonical	3	28	junction_1	49.1008033426021	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTATAGTCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	20476885	20486616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_20476993_20483306_20483434_20483635_20483697_20485031
ENSMUSG00000116627.2_0	chr12	+	2607	5	NNC	ENSMUSG00000116627.2	novel	1230	4	NA	NA	-66	-23288	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	36.2146379244636	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAACACACTACTGG	NA	False	NA	NA	False	NA	NA	NA	21040470	21067141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_21040874_21062987_21063115_21063316_21063378_21065030_21066271_21066365
ENSMUSG00000116627.2_1	chr12	+	3757	6	NNC	ENSMUSG00000116627.2	novel	1230	4	NA	NA	-30	-21988	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	32.3938265723579	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCCTTGTATTTTGTTG	NA	False	NA	-1	True	AATAAA	-11	NA	21040506	21068441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr12_+_21040874_21062987_21063115_21063316_21063378_21065030_21066077_21066244_21067983_21068023
ENSMUSG00000116632.2_0	chr16	-	1439	1	FSM	ENSMUSG00000116632.2	ENSMUST00000231504.2	1455	1	16	0	16	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTGTGTTGCACAGTT	NA	False	NA	NA	False	AATAAA	-16	NA	21152090	21150651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_21150700_21152100
ENSMUSG00000116652.3_0	chr16	+	1535	1	FSM	ENSMUSG00000116652.3	ENSMUST00000235474.2	699	1	-95	-741	-95	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGTGGCATTACTAAGAT	4630	False	NA	NA	False	AATAAA	-15	NA	17651336	17652871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_17651300_17652900
ENSMUSG00000116657.2_0	chr17	-	1678	1	FSM	ENSMUSG00000116657.2	ENSMUST00000231483.2	10812	1	10	9124	10	-9124	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGTATTTTTCTGCTTCTT	2460	False	NA	NA	False	AGTAAA	-9	NA	27775482	27773804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27773800_27775500
ENSMUSG00000116660.2_1	chr16	-	1049	4	FSM	ENSMUSG00000116660.2	ENSMUST00000232465.2	1209	4	160	0	160	0	multi-exon	FALSE	canonical	0	0	junction_2	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGTGAGTGATGATTGT	NA	False	NA	NA	False	AGTAAA	-19	NA	29858137	29840659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_29841398_29845162_29845294_29857304_29857446_29858098
ENSMUSG00000116673.2_0	chr16	-	7284	4	ISM	ENSMUSG00000116673.2	ENSMUST00000232614.2	497	5	10	7551	-8	2831	5prime_fragment	FALSE	canonical	3	34	junction_3	16.6599986661331	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTCACATGGCAGTCT	NA	False	NA	-9	True	NA	NA	NA	97883200	97860880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_97867866_97868954_97869016_97869203_97869331_97883089
ENSMUSG00000116673.2_1	chr16	-	7277	4	NIC	ENSMUSG00000116673.2	novel	2142	5	NA	NA	1	2831	intron_retention	FALSE	canonical	3	11	junction_3	25.8069758011279	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTCACATGGCAGTCT	NA	False	NA	-9	True	NA	NA	NA	97883649	97860880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_97867866_97868954_97869016_97869203_97869331_97883545
ENSMUSG00000116715.2_0	chr12	+	2475	4	Fusion	ENSMUSG00000116715.2_ENSMUSG00000116558.2	novel	883	3	NA	NA	-297	404	multi-exon	FALSE	canonical	2	4	junction_2	22.69116323349	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAACGTACTGGAG	NA	False	NA	NA	False	NA	NA	NA	20362218	20373200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_20362642_20369605_20369733_20369934_20369996_20371336
ENSMUSG00000116715.2_11	chr12	+	976	1	Genic_Genomic	ENSMUSG00000116715.2	novel	NA	NA	NA	NA	2619	404	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAACGTACTGGAG	NA	False	NA	NA	False	NA	NA	NA	20372224	20373200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_20372200_20373200
ENSMUSG00000116715.2_3	chr12	+	2496	5	Fusion	ENSMUSG00000116715.2_ENSMUSG00000116558.2	novel	883	3	NA	NA	-298	592	multi-exon	FALSE	non_canonical	0	0	junction_4	22.2977016752848	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTATAGTCTCCATTAT	NA	False	NA	3	True	NA	NA	NA	20362217	20373388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr12_+_20362642_20369605_20369733_20369934_20369996_20371336_20372168_20372335
ENSMUSG00000116739.2_0	chr16	-	2618	1	FSM	ENSMUSG00000116739.2	ENSMUST00000232628.2	293	1	-2325	0	-2325	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTTGTGCAAGTCTGTG	NA	False	NA	-1	True	AATAAA	-16	NA	31808266	31805648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_31805600_31808300
ENSMUSG00000116757.2_0	chr17	+	125	1	FSM	ENSMUSG00000116757.2	ENSMUST00000231695.2	798	1	712	-39	712	39	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTTAAAAAAAAATCCA	NA	False	NA	NA	False	AATATA	-6	NA	16778219	16778344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_16778200_16778300
ENSMUSG00000116762.2_0	chr16	+	3280	2	NIC	ENSMUSG00000116762.2	novel	995	3	NA	NA	-14	384	intron_retention	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAATTACTTTTGCCAG	1905	False	NA	NA	False	NA	NA	NA	31327190	31330979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_31329495_31330003
ENSMUSG00000116780.2_0	chr17	-	733	4	FSM	ENSMUSG00000116780.2	ENSMUST00000097399.6	712	4	28	-49	28	49	multi-exon	TRUE	canonical	3	13	junction_1	6.64997911442	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTGAGCCTCGTGTTAC	NA	False	NA	NA	False	AATAAA	-13	NA	15199024	15184454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_15184618_15187807_15187964_15190648_15190856_15198817
ENSMUSG00000116780.2_1	chr17	-	489	3	FSM	ENSMUSG00000116780.2	ENSMUST00000231584.2	459	3	17	-47	17	47	multi-exon	FALSE	canonical	3	13	junction_1	7.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGTGAGCCTCGTGTT	NA	False	NA	NA	False	AATAAA	-11	NA	15198938	15184456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_15184618_15190648_15190856_15198817
ENSMUSG00000116780.2_2	chr17	-	818	3	ISM	ENSMUSG00000116780.2	ENSMUST00000097399.6	712	4	44	3040	44	-3040	5prime_fragment	FALSE	canonical	3	15	junction_1	6.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGATCCCAGGACTTGGG	NA	False	NA	NA	False	AATAAA	-28	NA	15199008	15187543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_15187964_15190648_15190856_15198817
ENSMUSG00000116802.2_2	chr17	+	2449	4	FSM	ENSMUSG00000116802.2	ENSMUST00000231355.2	2194	4	20	-275	20	275	multi-exon	FALSE	canonical	3	89	junction_3	12.3917535302941	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATCCCCAAGTATGCTGC	6244	False	NA	13	True	NA	NA	NA	17455153	17486600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_17455288_17482739_17482867_17483108_17483170_17484473
ENSMUSG00000116802.2_6	chr17	+	1428	1	Genic_Genomic	ENSMUSG00000116802.2	novel	NA	NA	NA	NA	2560	274	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATCCCCAAGTATGCTG	NA	False	NA	12	True	NA	NA	NA	17485171	17486599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_+_17485200_17486600
ENSMUSG00000116815.2_7	chr12	+	2732	4	Genic_Genomic	ENSMUSG00000116815.2_ENSMUSG00000113724.2	novel	1785	1	NA	NA	-220	400	multi-exon	FALSE	canonical	0	0	junction_2	12.9700509722291	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAATCATACTGGAGAG	NA	False	NA	-8	True	NA	NA	NA	18660164	18700399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_18660512_18696480_18696608_18696807_18696869_18698202
ENSMUSG00000116815.2_9	chr12	+	3731	6	Genic_Genomic	ENSMUSG00000116815.2_ENSMUSG00000113724.2	novel	1785	1	NA	NA	-171	1699	multi-exon	FALSE	non_canonical	0	0	junction_2	11.1067547015319	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATCCTTGTATTTGGTTG	NA	False	NA	NA	False	AATAAA	-11	NA	18660213	18701698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_18660512_18696480_18696608_18696807_18696869_18698202_18698754_18698836_18699174_18699341
ENSMUSG00000116835.2_0	chr16	-	353	1	FSM	ENSMUSG00000116835.2	ENSMUST00000231993.2	615	1	310	-48	310	48	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	AATAAA	-14	NA	33827517	33827164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_33827200_33827500
ENSMUSG00000116858.2_0	chr17	+	2011	2	NIC	ENSMUSG00000116858.2	novel	1354	3	NA	NA	-743	-4	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCATTTTGGTTGCAAG	7793	False	NA	12	True	AATAAA	-6	NA	3247641	3309166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_3248499_3308012
ENSMUSG00000116875.2_0	chr16	+	1208	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	-66	-173	-66	173	mono-exon	FALSE	NA	NA	NA	NA	NA	1174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTTTTTTCATTTCAAA	NA	False	NA	NA	False	AATAAA	-22	NA	24348077	24349285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_24348100_24349300
ENSMUSG00000116883.2_0	chr12	+	3381	4	ISM	ENSMUSG00000116883.2	ENSMUST00000222348.3	1546	5	-311	3	-311	-3	intron_retention	FALSE	canonical	1	10	junction_1	10.8730042868667	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTCCTTGTATTTTGTTG	NA	False	NA	1	True	NA	NA	NA	20665032	20687946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_+_20665431_20683109_20683237_20683438_20683500_20685151
ENSMUSG00000116895.2_12	chr17	+	863	6	ISM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	69	5926	69	-5926	5prime_fragment	FALSE	canonical	3	116	junction_1	50.8173198821032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15230506	15236785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450
ENSMUSG00000116895.2_14	chr17	+	1481	11	ISM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	69	1714	69	-1714	5prime_fragment	FALSE	canonical	0	0	junction_7	68.9100863444532	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15230506	15240997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237540_15238346_15238462_15239227_15239331_15239703_15239734_15240527
ENSMUSG00000116895.2_19	chr17	+	1408	11	ISM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	695	182	536	-182	3prime_fragment	FALSE	canonical	0	0	junction_6	71.215237133636	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCCTTTTTGGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	15231132	15242529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237540_15238346_15238462_15239227_15239331_15239703_15239734_15240527_15240597_15242176
ENSMUSG00000116895.2_4	chr17	+	5079	3	ISM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	79	5927	79	-5927	intron_retention	FALSE	canonical	3	116	junction_1	77	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15230516	15236784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15230534_15231134_15231304_15231891
ENSMUSG00000116895.2_6	chr17	+	1418	12	FSM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	68	198	68	-198	multi-exon	FALSE	canonical	0	0	junction_7	68.2306491805794	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATTTGTCTTTGAAAT	NA	False	NA	NA	False	AATATA	-41	NA	15230505	15242513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237540_15238346_15238462_15239227_15239331_15239703_15239734_15240527_15240597_15242176
ENSMUSG00000116895.2_8	chr17	+	3292	5	ISM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	66	5927	66	-5927	intron_retention	FALSE	canonical	3	116	junction_1	56.3488021168152	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15230503	15236784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933
ENSMUSG00000116912.2_1	chr16	+	2277	1	FSM	ENSMUSG00000116912.2	ENSMUST00000232039.2	2157	1	-4	-116	-4	116	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GATTGCCAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	53804286	53806563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_53804300_53806600
ENSMUSG00000116925.2_2	chr16	-	1685	2	FSM	ENSMUSG00000022718.13	ENSMUST00000144536.2	623	2	423	-1485	423	-9	multi-exon	FALSE	canonical	3	238	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGGAATGGCTGGTTTC	NA	False	NA	-9	True	CATAAA	-8	NA	18074571	18071820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_18073470_18074535
ENSMUSG00000116933.2_0	chr16	-	149	1	ISM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	6316	9	1313	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGGGCGTGAGGAGCC	7127	False	NA	-10	True	AATAAA	-11	NA	91722259	91722110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_91722100_91722300
ENSMUSG00000116947.2_0	chr16	+	2511	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-515	1915	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	116.802777744748	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGGCTCCGCGTGATTC	2349	False	NA	16	True	NA	NA	NA	93811784	93815010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_93811971_93812291_93812370_93812713_93814317_93814366
ENSMUSG00000116947.2_3	chr16	+	952	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-474	1914	at_least_one_novel_splicesite	FALSE	canonical	3	174	junction_3	36.1693547388148	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCTGGCTCCGCGTGATT	2390	False	NA	15	True	NA	NA	NA	93811825	93815009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814572
ENSMUSG00000116947.2_32	chr16	+	1673	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-473	1069	at_least_one_novel_splicesite	FALSE	canonical	3	232	junction_1	14.5	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACATAGTGGAGCATGT	2391	False	NA	NA	False	NA	NA	NA	93811826	93814164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_93811971_93812291_93812370_93812713
ENSMUSG00000116947.2_48	chr16	+	1117	5	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-467	1911	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	120.524893694207	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATCCTGGCTCCGCGTG	2397	False	NA	12	True	NA	NA	NA	93811832	93815006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814297_93814317_93814416
ENSMUSG00000116951.2_0	chr16	-	180	1	ISM	ENSMUSG00000116951.2	ENSMUST00000231571.2	805	3	1501	0	868	0	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGTCTT	5912	False	NA	NA	False	NA	NA	NA	30688041	30687861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_-_30687900_30688000
ENSMUSG00000116953.2_12	chr17	+	3289	5	ISM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	405	5755	-4	-4224	intron_retention	FALSE	canonical	3	116	junction_1	56.0507582464323	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15199134	15205412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561
ENSMUSG00000116953.2_18	chr17	+	3857	4	ISM	ENSMUSG00000116953.2	ENSMUST00000232182.2	2416	10	-602	4233	-10	-4233	intron_retention	FALSE	canonical	3	168	junction_2	40.8928138212843	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAACTCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15199158	15205403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15199932_15200519_15200660_15201837_15201940_15202561
ENSMUSG00000116953.2_2	chr17	+	1400	12	FSM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	400	44	-9	-44	multi-exon	FALSE	canonical	0	0	junction_7	75.6540626145262	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCTGGGTTCTGAAGC	NA	False	NA	NA	False	AATATA	-19	NA	15199129	15211123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159_15209229_15210808
ENSMUSG00000116953.2_20	chr17	+	1390	11	ISM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	1031	24	0	-24	3prime_fragment	FALSE	canonical	0	0	junction_6	79.3299439051863	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATAATTTGTCTTTGAA	NA	False	NA	NA	False	AATATA	-39	NA	15199760	15211143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159_15209229_15210808
ENSMUSG00000116953.2_35	chr17	+	1495	10	ISM	ENSMUSG00000116953.2	ENSMUST00000231723.2	1586	11	592	5	0	-5	3prime_fragment	FALSE	canonical	0	0	junction_6	81.1525008552523	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATACAATTAATGTTTTG	NA	False	NA	NA	False	AAAAAG	-13	NA	15199760	15209668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159
ENSMUSG00000116953.2_38	chr17	+	5096	3	ISM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	399	5754	-10	-4223	intron_retention	FALSE	canonical	3	116	junction_1	76	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15199128	15205413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15199162_15199762_15199932_15200519
ENSMUSG00000116953.2_6	chr17	+	1520	11	ISM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	405	1499	-4	-5	5prime_fragment	FALSE	canonical	0	0	junction_7	77.0690599397709	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATACAATTAATGTTTTG	NA	False	NA	NA	False	AAAAAG	-13	NA	15199134	15209668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159
ENSMUSG00000116957.2_1	chr16	+	158	1	Genic_Genomic	ENSMUSG00000116957.2	novel	NA	NA	NA	NA	1827	18	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACTATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	32372386	32372544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_+_32372400_32372500
ENSMUSG00000116988.2_1	chr17	-	958	9	FSM	ENSMUSG00000095687.3	ENSMUST00000097420.7	1793	9	313	522	1	-522	multi-exon	FALSE	canonical	0	0	junction_6	240.913852600883	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTGTTTGGCTTTTTC	NA	False	NA	-8	True	AAAAAG	-7	NA	8366616	8347429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
ENSMUSG00000116995.2_0	chr17	-	1233	4	FSM	ENSMUSG00000116995.2	ENSMUST00000232087.2	1210	4	-38	15	-38	-15	multi-exon	FALSE	canonical	2	4	junction_1	2.62466929133727	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	3165108	3162079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_3162848_3163562_3163623_3164462_3164621_3164861
ENSMUSG00000117007.2_1	chr17	+	1191	3	FSM	ENSMUSG00000117007.2	ENSMUST00000233006.2	1125	3	-63	-3	-63	3	multi-exon	FALSE	canonical	1	3	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAAACCTGCAGACTGGT	1546	False	NA	NA	False	NA	NA	NA	29275770	29278722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_29275960_29276834_29276933_29277818
ENSMUSG00000117007.2_2	chr17	+	1410	3	NNC	ENSMUSG00000117007.2	novel	1247	3	NA	NA	327	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTGCAGACTGGTAAGC	1936	False	NA	NA	False	NA	NA	NA	29276160	29278726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_29276565_29276834_29276933_29277818
ENSMUSG00000117013.2_3	chr17	+	2786	2	ISM	ENSMUSG00000117013.2	ENSMUST00000232793.2	771	5	34178	-683	17846	683	3prime_fragment	FALSE	canonical	3	38	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTTCATGGCTAATCAT	NA	False	NA	NA	False	AATAAA	-14	NA	21869551	21876083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_21871266_21875011
ENSMUSG00000117042.2_5	chr17	-	4183	3	NIC	ENSMUSG00000117063.2	novel	2047	5	NA	NA	261018	2248	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGACCGTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	13720622	13707286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_13711102_13716878_13717048_13720423
ENSMUSG00000117055.3_2	chr17	+	3004	5	NNC	ENSMUSG00000117055.3	novel	1733	2	NA	NA	-13343	1028	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	3.26917420765551	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAACTGCATCAGTTTTT	NA	False	NA	1	True	NA	NA	NA	22893357	22910469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_22893506_22905293_22905368_22906456_22906513_22906703_22906831_22907870
ENSMUSG00000117055.3_3	chr17	+	2988	5	NNC	ENSMUSG00000117055.3	novel	1733	2	NA	NA	-13347	1026	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	9.17537465175128	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTAACTGCATCAGTTT	NA	False	NA	-1	True	NA	NA	NA	22893353	22910467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_22893506_22905311_22905368_22906456_22906513_22906703_22906831_22907870
ENSMUSG00000117055.3_7	chr17	+	2425	1	Genic_Genomic	ENSMUSG00000117055.3	novel	NA	NA	NA	NA	1344	1028	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAACTGCATCAGTTTTT	NA	False	NA	1	True	NA	NA	NA	22908044	22910469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_+_22908000_22910500
ENSMUSG00000117121.2_0	chr17	-	1851	1	FSM	ENSMUSG00000117121.2	ENSMUST00000233300.2	1881	1	35	-5	35	5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTATTTTGTTTGTGTGTA	NA	False	NA	NA	False	AATAAA	-20	NA	71199869	71198018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71198000_71199900
ENSMUSG00000117220.2_0	chr17	-	161	1	Genic_Genomic	ENSMUSG00000117220.2	novel	NA	NA	NA	NA	2890	54	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	66539050	66538889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_66538900_66539000
ENSMUSG00000117231.2_13	chr17	-	3093	3	FSM	ENSMUSG00000117231.2	ENSMUST00000233879.2	3157	3	64	0	2	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACACTCAGATTCACACT	NA	False	NA	-21	True	NA	NA	NA	71112990	71105620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_71108460_71112006_71112144_71112873
ENSMUSG00000117231.2_7	chr17	-	3508	1	NIC	ENSMUSG00000117231.2	novel	2325	5	NA	NA	3864	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACACTCAGATTCACACT	NA	False	NA	-21	True	NA	NA	NA	71109128	71105620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_71105600_71109100
ENSMUSG00000117234.2_0	chr17	-	2963	4	NNC	ENSMUSG00000117234.2	novel	1756	2	NA	NA	-11653	617	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGATCTTGGCTGTTTCC	NA	False	NA	NA	False	NA	NA	NA	22300522	22285627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_22287883_22288751_22288879_22297569_22297618_22299989
ENSMUSG00000117278.2_2	chr17	+	1773	1	FSM	ENSMUSG00000117278.2	ENSMUST00000233737.2	3095	1	1314	8	1314	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTAATATTTTTCTGGG	NA	False	NA	NA	False	AATAAA	-14	NA	13552323	13554096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_13552300_13554100
ENSMUSG00000117284.2_0	chr17	-	1883	1	ISM	ENSMUSG00000117284.2	ENSMUST00000233465.2	3474	6	27073	11	27073	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGTTGAACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	22506745	22504862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_22504900_22506700
ENSMUSG00000117284.2_1	chr17	-	3568	7	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	5	-11	at_least_one_novel_splicesite	FALSE	canonical	2	21	junction_6	14.4501057281791	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGTTGAACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	22533813	22504862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_22507883_22508749_22508877_22511388_22511437_22528185_22528296_22528485_22528579_22532217_22532302_22533727
ENSMUSG00000117284.2_3	chr17	-	3473	6	FSM	ENSMUSG00000117284.2	ENSMUST00000233465.2	3474	6	-3	4	-3	-4	multi-exon	FALSE	canonical	2	21	junction_5	14.9853261559434	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTGGCTGTTTGTATT	NA	False	NA	NA	False	NA	NA	NA	22533821	22504855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_22507883_22508749_22508877_22511388_22511437_22528485_22528579_22532217_22532302_22533727
ENSMUSG00000117284.2_8	chr17	-	3942	2	ISM	ENSMUSG00000117284.2	ENSMUST00000233465.2	3474	6	24154	4	24154	-4	3prime_fragment	FALSE	canonical	3	56	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTGGCTGTTTGTATT	9717	False	NA	NA	False	NA	NA	NA	22509664	22504855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_22507883_22508749
ENSMUSG00000117286.2_0	chr5	+	2240	12	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	-114	22706	-114	-4	5prime_fragment	FALSE	canonical	3	120	junction_1	19.1168654714769	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTGCCTTTTTTATT	267	False	NA	13	True	AATAAA	-16	NA	37242599	37282639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ENSMUSG00000117286.2_1	chr5	+	2089	12	Fusion	ENSMUSG00000063646.19_ENSMUSG00000113373.2	novel	516	2	NA	NA	2845	-4	multi-exon	FALSE	canonical	3	13	junction_1	47.5912346954217	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTGCCTTTTTTATT	3226	False	NA	13	True	AATAAA	-16	NA	37245558	37282639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr5_+_37245651_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ENSMUSG00000117286.2_11	chr5	+	1407	10	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	15361	22706	9651	-4	internal_fragment	FALSE	canonical	3	165	junction_2	7.99228022593531	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTGCCTTTTTTATT	NA	False	NA	13	True	AATAAA	-16	NA	37258074	37282639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ENSMUSG00000117286.2_15	chr5	+	678	3	ISM	ENSMUSG00000063646.19	ENSMUST00000212047.2	1191	6	7302	4	-2146	-4	3prime_fragment	FALSE	canonical	3	187	junction_1	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTGCCTTTTTTATT	1886	False	NA	13	True	AATAAA	-16	NA	37278172	37282639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_37278369_37280623_37280687_37282220
ENSMUSG00000117286.2_3	chr5	+	2013	11	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	5741	22706	31	-4	internal_fragment	FALSE	canonical	3	147	junction_1	11.74265728019	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTGCCTTTTTTATT	2511	False	NA	13	True	AATAAA	-16	NA	37248454	37282639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ENSMUSG00000117286.2_9	chr5	+	1431	6	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	5710	40472	0	2654	internal_fragment	FALSE	canonical	3	147	junction_1	12.1556571192182	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAACA	2480	False	NA	NA	False	AATGAA	-40	NA	37248423	37264873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602
ENSMUSG00000117300.2_0	chr17	-	930	1	FSM	ENSMUSG00000117300.2	ENSMUST00000233888.2	570	1	39	-399	39	399	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCCACCAAAAAAAAAAAAAA	2833	False	NA	NA	False	NA	NA	NA	65745653	65744723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_65744700_65745700
ENSMUSG00000117310.3_0	chr1	-	2841	6	FSM	ENSMUSG00000117310.3	ENSMUST00000027232.15	4129	6	-1	1289	-1	-12	multi-exon	FALSE	canonical	3	1976	junction_5	190.472465201666	2709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATCTGAAATGTTTCCT	NA	False	NA	NA	False	AATAAA	-12	NA	30988837	30980672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_30982405_30983012_30983088_30983616_30983748_30984018_30984112_30985118_30985721_30988629
ENSMUSG00000117310.3_2	chr1	-	2838	6	FSM	ENSMUSG00000117310.3	ENSMUST00000076587.6	2851	6	1	12	-1	-12	multi-exon	FALSE	canonical	3	443	junction_5	787.975024984929	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATCTGAAATGTTTCCT	NA	False	NA	NA	False	AATAAA	-12	NA	30988837	30980672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_30982405_30983012_30983088_30983616_30983748_30984018_30984112_30985118_30985718_30988629
ENSMUSG00000117338.2_0	chr17	-	1638	2	ISM	ENSMUSG00000024213.15	ENSMUST00000133048.8	443	3	1238	-1314	1238	-4	3prime_fragment	FALSE	canonical	3	348	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTTTGCTCTTTGTT	NA	False	NA	-27	True	AATAAA	-14	NA	27801055	27798364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27799929_27800981
ENSMUSG00000117338.2_1	chr17	-	1807	4	ISM	ENSMUSG00000024213.15	ENSMUST00000025050.13	2223	5	26659	9	379	-4	3prime_fragment	FALSE	canonical	3	348	junction_1	4.18993502999218	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTTTGCTCTTTGTT	4838	False	NA	-27	True	AATAAA	-14	NA	27815810	27798364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27799929_27800981_27801067_27802185_27802231_27815697
ENSMUSG00000117341.2_0	chr17	-	3926	4	Fusion	ENSMUSG00000046173.4_ENSMUSG00000117341.2	novel	588	4	NA	NA	-1	-23	multi-exon	FALSE	canonical	1	2	junction_1	4.02768199119819	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATTAATTTTTTAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	9945283	9885446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr17_-_9888971_9924446_9924688_9941118_9941218_9945221
ENSMUSG00000117341.2_3	chr17	-	4636	3	FSM	ENSMUSG00000117341.2	ENSMUST00000233459.2	585	3	7	-4058	-1	4058	multi-exon	FALSE	canonical	3	10	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATCCAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9945283	9920212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_9924688_9941118_9941218_9945221
ENSMUSG00000117358.2_0	chr17	-	377	3	NNC	ENSMUSG00000117358.2	novel	327	3	NA	NA	254	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	48.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCCATTGGTCTCAGT	NA	False	NA	-8	True	AATAAA	-11	NA	74834385	74826662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_74826911_74830509_74830574_74834320
ENSMUSG00000117384.2_1	chr17	-	566	2	ISM	ENSMUSG00000117384.2	ENSMUST00000234580.2	1396	4	2045	23	2045	-23	3prime_fragment	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATATAAGCCTATATCA	NA	False	NA	NA	False	NA	NA	NA	87500325	87499666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_87499956_87500048
ENSMUSG00000117406.2_0	chr17	-	1672	1	NIC	ENSMUSG00000036473.17	novel	7683	8	NA	NA	-1	-14183	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AGTAAA	-35	NA	24424494	24422822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_24422800_24424500
ENSMUSG00000117406.2_1	chr17	-	3683	6	FSM	ENSMUSG00000036473.17_ENSMUSG00000117406.2	ENSMUST00000234909.2	704	6	-3	-2976	2	-1	multi-exon	FALSE	canonical	1	1	junction_4	1.83303027798234	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AGTAAA	-35	NA	24428376	24422822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24425922_24426181_24426257_24426366_24426418_24426539_24426690_24426772_24426962_24428257
ENSMUSG00000117406.2_2	chr17	-	4913	6	FSM	ENSMUSG00000117406.2	ENSMUST00000024931.6	5038	6	125	0	-2	0	multi-exon	FALSE	canonical	1	1	junction_4	1.83303027798234	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	AGTAAA	-36	NA	24428380	24422821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_24425922_24426181_24426257_24426366_24426418_24426539_24426690_24426772_24426962_24427032
ENSMUSG00000117431.2_2	chr17	+	634	2	NIC	ENSMUSG00000117431.2	novel	440	3	NA	NA	-273	4	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGGATGGTTGCTCTGGA	2205	False	NA	NA	False	ATTAAA	-19	NA	84316049	84320841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_84316398_84320555
ENSMUSG00000117438.2_0	chr17	-	827	1	FSM	ENSMUSG00000117438.2	ENSMUST00000234808.2	885	1	123	-65	123	65	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	82718125	82717298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_82717300_82718100
ENSMUSG00000117440.2_2	chr17	+	873	1	ISM	ENSMUSG00000117440.2	ENSMUST00000234217.2	1964	2	2711	0	2711	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTATCTTTTTTTATGTT	NA	False	NA	NA	False	NA	NA	NA	80557241	80558114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_80557200_80558100
ENSMUSG00000117499.2_0	chr17	-	2506	1	FSM	ENSMUSG00000117499.2	ENSMUST00000234240.2	1323	1	-1183	0	-1183	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCCATTGCTATCATCTT	NA	False	NA	-3	True	AATAAA	-19	NA	95124674	95122168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_95122200_95124700
ENSMUSG00000117505.2_0	chr18	-	2169	1	FSM	ENSMUSG00000117505.2	ENSMUST00000234126.2	1096	1	-3	-1070	-3	1070	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTCACTGGAAAATACTC	-24	True	NA	NA	False	AATAAA	-22	NA	7869116	7866947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_7866900_7869100
ENSMUSG00000117592.2_0	chr17	-	1983	2	FSM	ENSMUSG00000117592.2	ENSMUST00000234239.2	930	2	124	-1177	-8	-5	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGCCTCGGCCTCCACT	8238	False	NA	NA	False	AATAAA	-29	NA	29541399	29538959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_29540671_29541127
ENSMUSG00000117621.2_0	chr18	+	460	1	FSM	ENSMUSG00000117621.2	ENSMUST00000234633.2	515	1	7	48	7	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATTGTCTCTGACCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	47245212	47245672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_47245200_47245700
ENSMUSG00000117634.2_0	chr18	-	2337	1	FSM	ENSMUSG00000117634.2	ENSMUST00000235010.2	2365	1	21	7	21	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATATTTTTGAAGCT	NA	False	NA	NA	False	NA	NA	NA	11790820	11788483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_11788500_11790800
ENSMUSG00000117674.2_0	chr18	-	148	1	NIC	ENSMUSG00000117674.2	novel	647	4	NA	NA	15559	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	40375989	40375841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_40375800_40376000
ENSMUSG00000117679.2_10	chr18	-	2275	12	NIC	ENSMUSG00000117679.2	novel	2258	12	NA	NA	-17	-3	intron_retention	FALSE	canonical	3	9	junction_7	17.4876579855103	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACTAGTGATGAGTATAT	NA	False	NA	-6	True	AATAAA	-15	NA	36812386	36804210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810049_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
ENSMUSG00000117679.2_15	chr18	-	1959	12	NNC	ENSMUSG00000117679.2	novel	2067	13	NA	NA	52	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	19.540591361159	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCACTAGTGATGAGTAT	NA	False	NA	-8	True	AATAAA	-13	NA	36812317	36804212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809537_36809917_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
ENSMUSG00000117679.2_2	chr18	-	4010	16	Fusion	ENSMUSG00000117679.2_ENSMUSG00000006050.13	novel	2258	12	NA	NA	0	-1	intron_retention	FALSE	canonical	3	26	junction_14	618.954028090042	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATTCTGATGTCAGACT	NA	False	NA	-10	True	NA	NA	NA	36812369	36800299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056_36803183_36803300_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
ENSMUSG00000117679.2_21	chr18	-	1960	10	NIC	ENSMUSG00000117679.2	novel	2258	12	NA	NA	52	-5	intron_retention	FALSE	canonical	3	5	junction_9	18.684515276322	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCACTAGTGATGAGTAT	NA	False	NA	-8	True	AATAAA	-13	NA	36812317	36804212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810046_36810162_36810310_36810497_36810559_36812049
ENSMUSG00000117679.2_6	chr18	-	2046	12	NIC	ENSMUSG00000117679.2	novel	2258	12	NA	NA	14	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	19.1285343517553	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGTGATGAGTATATTGA	NA	False	NA	-3	True	AATAAA	-18	NA	36812405	36804207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809917_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
ENSMUSG00000117679.2_8	chr18	-	3916	6	ISM	ENSMUSG00000117679.2	ENSMUST00000236001.2	2258	12	31	5	31	-5	intron_retention	FALSE	canonical	3	51	junction_4	8.58836422143356	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCACTAGTGATGAGTAT	NA	False	NA	-8	True	AATAAA	-13	NA	36812338	36804212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415
ENSMUSG00000117679.2_9	chr18	-	2265	12	FSM	ENSMUSG00000117679.2	ENSMUST00000236001.2	2258	12	-10	3	-10	-3	multi-exon	FALSE	canonical	3	26	junction_10	13.4925752462923	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACTAGTGATGAGTATAT	NA	False	NA	-6	True	AATAAA	-15	NA	36812379	36804210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
ENSMUSG00000117694.2_0	chr18	+	3924	18	NIC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	0	3698	combination_of_known_splicesites	FALSE	canonical	3	3	junction_4	426.688236551083	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAAAAACTT	NA	False	NA	19	True	NA	NA	NA	35686462	35724459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690445_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000117694.2_1	chr18	+	2976	18	NIC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	1	3698	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	471.977830691612	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAAAAACTT	NA	False	NA	19	True	NA	NA	NA	35686461	35724459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35692395_35692562_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000117694.2_10	chr18	+	1130	1	FSM	ENSMUSG00000065649.3	ENSMUST00000083715.3	196	1	-281	-653	-281	653	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGACATTGGAATTTCAT	NA	False	NA	NA	False	NA	NA	NA	35689803	35690933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35689800_35690900
ENSMUSG00000117694.2_12	chr18	+	4068	19	NIC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	0	3698	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	458.60646407229	2	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAAAAACTT	NA	False	NA	19	True	NA	NA	NA	35686462	35724459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35692395_35692562_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000117694.2_3	chr18	+	3895	18	NIC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	4	3698	combination_of_known_splicesites	FALSE	canonical	3	42	junction_4	422.186760687322	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAAAAACTT	NA	False	NA	19	True	NA	NA	NA	35686469	35724459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000117694.2_7	chr18	+	2791	17	NIC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	6	3698	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	434.874982035067	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAAAAACTT	NA	False	NA	19	True	NA	NA	NA	35686480	35724459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000117694.2_8	chr18	+	2810	17	NIC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	-7	3698	combination_of_known_splicesites	FALSE	canonical	2	2	junction_4	439.881500378227	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAAAAACTT	NA	False	NA	19	True	NA	NA	NA	35686483	35724459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690445_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000117698.2_0	chr19	+	1985	1	FSM	ENSMUSG00000117698.2	ENSMUST00000236819.2	1999	1	0	14	0	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATGACAATAAGTCTGA	NA	False	NA	NA	False	AATAAA	-22	NA	43663616	43665601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_43663600_43665600
ENSMUSG00000117725.2_0	chr17	+	1100	1	FSM	ENSMUSG00000117725.2	ENSMUST00000235695.2	6295	1	32	5163	-26	-5160	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGTGTCCCCAATTTATT	1105	False	NA	NA	False	AATACA	-14	NA	30795305	30796405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_30795300_30796400
ENSMUSG00000117725.2_1	chr17	+	168	1	FSM	ENSMUSG00000117725.2	ENSMUST00000235695.2	6295	1	6116	11	5948	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATATAATCTGATTAT	720	False	NA	NA	False	NA	NA	NA	30801389	30801557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_30801400_30801600
ENSMUSG00000117732.2_0	chr18	+	2216	2	FSM	ENSMUSG00000090000.3	ENSMUST00000128679.2	335	2	-20	-1861	-2	-3	multi-exon	FALSE	canonical	3	1797	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAGCGTCTGATTTATGC	NA	False	NA	12	True	AATAAA	-14	NA	77017738	77029305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_77017913_77027263
ENSMUSG00000117732.2_5	chr18	+	1293	5	ISM	ENSMUSG00000025421.16	ENSMUST00000026485.15	1640	8	10665	6	10612	-6	3prime_fragment	FALSE	canonical	3	321	junction_2	17.1664644001029	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGATGTTTTAATTAGAC	3858	False	NA	13	True	NA	NA	NA	77042744	77059095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUSG00000117732.2_6	chr18	+	854	2	ISM	ENSMUSG00000025421.16	ENSMUST00000026485.15	1640	8	22760	5	22707	-5	3prime_fragment	FALSE	canonical	3	349	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATGTTTTAATTAGACA	NA	False	NA	14	True	NA	NA	NA	77054839	77059096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_77054904_77058306
ENSMUSG00000117748.2_0	chr8	-	1616	1	ISM	ENSMUSG00000046691.15	ENSMUST00000177068.8	2931	4	8085	30	7707	1	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTGTCGCTCCATTTT	NA	False	NA	-30	True	AATAAA	-14	NA	107612140	107610524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr8_-_107610500_107612100
ENSMUSG00000117748.2_1	chr8	-	2779	3	FSM	ENSMUSG00000117748.2	ENSMUST00000176437.9	369	3	2	-2412	2	-3	multi-exon	FALSE	canonical	3	66	junction_1	124	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTGTCGCTCCATTTT	NA	False	NA	-30	True	AATAAA	-14	NA	107620221	107610524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107613159_107613932_107613989_107620132
ENSMUSG00000117748.2_2	chr8	-	2724	2	FSM	ENSMUSG00000117748.2	ENSMUST00000169312.2	2730	2	3	3	1	-3	multi-exon	FALSE	canonical	2	13	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTGTCGCTCCATTTT	NA	False	NA	-30	True	AATAAA	-14	NA	107620222	107610524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_107613159_107620132
ENSMUSG00000117771.2_0	chr19	+	601	1	FSM	ENSMUSG00000117771.2	ENSMUST00000237006.2	728	1	203	-76	203	76	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAACCAGGAAAAAAAAA	5932	False	NA	NA	False	GATAAA	-15	NA	5486228	5486829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5486200_5486800
ENSMUSG00000117773.2_1	chr19	-	168	1	ISM	ENSMUSG00000117773.2	ENSMUST00000235154.2	692	2	71	2074	71	-2074	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGTAAAATT	NA	False	NA	NA	False	NA	NA	NA	3792466	3792298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_3792300_3792500
ENSMUSG00000117775.2_0	chr18	+	3795	1	FSM	ENSMUSG00000117775.2	ENSMUST00000237947.2	2678	1	-1123	6	-1123	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAACTTGTATTTTAGTC	NA	False	NA	NA	False	AATAAA	-12	NA	65766740	65770535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_65766700_65770500
ENSMUSG00000117786.2_0	chr17	-	161	1	NIC	ENSMUSG00000117786.2	novel	4014	3	NA	NA	39310	-3412	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATCAAAAAAAAAAAAAAAA	1395	False	NA	NA	False	NA	NA	NA	31142884	31142723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_31142700_31142900
ENSMUSG00000117789.2_1	chr19	+	1992	2	FSM	ENSMUSG00000047379.8	ENSMUST00000053705.8	2032	2	39	1	39	0	multi-exon	FALSE	canonical	3	75	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGGCTCTGTTACTCT	241	False	NA	8	True	AATAAA	-15	NA	5088892	5091158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5090061_5090334
ENSMUSG00000117789.2_2	chr19	+	1365	10	FSM	ENSMUSG00000080268.5	ENSMUST00000116567.4	1388	10	17	6	-16	-6	multi-exon	FALSE	canonical	3	224	junction_4	16.1528195757556	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGGTGTGGCTGATGTG	2747	False	NA	2	True	AATAAA	-13	NA	5091398	5099939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
ENSMUSG00000117814.2_0	chr19	+	2912	1	FSM	ENSMUSG00000117814.2	ENSMUST00000236822.2	1945	1	-970	3	-970	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCAGCTGTGTGTTCCCT	5051	False	NA	NA	False	GATAAA	-20	NA	46868963	46871875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_46869000_46871900
ENSMUSG00000117818.2_0	chr17	-	2441	1	FSM	ENSMUSG00000117818.2	ENSMUST00000235158.2	2711	1	271	-1	271	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCGCTGTTCTGTCTGCTG	NA	False	NA	-1	True	NA	NA	NA	31770960	31768519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31768500_31771000
ENSMUSG00000117819.2_1	chr17	+	2757	2	FSM	ENSMUSG00000079605.6	ENSMUST00000120016.3	2796	2	31	8	-19	-8	multi-exon	FALSE	canonical	3	46	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTGACAGTAGACTGGC	NA	False	NA	8	True	AATAAA	-16	NA	27192171	27195169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_27192289_27192529
ENSMUSG00000117819.2_2	chr17	+	2335	1	ISM	ENSMUSG00000079605.6	ENSMUST00000120016.3	2796	2	694	8	644	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTGACAGTAGACTGGC	NA	False	NA	8	True	AATAAA	-16	NA	27192834	27195169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_+_27192800_27195200
ENSMUSG00000117869.2_0	chr18	+	718	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	40	432	-1	2	multi-exon	FALSE	canonical	3	167	junction_1	16.2685791225499	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGGAATTTCATTGGC	NA	False	NA	NA	False	NA	NA	NA	35686463	35690937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
ENSMUSG00000117869.2_1	chr18	+	2866	3	NIC	ENSMUSG00000117869.2	novel	1190	4	NA	NA	5	2	intron_retention	FALSE	canonical	3	167	junction_1	17.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGGAATTTCATTGGC	NA	False	NA	NA	False	NA	NA	NA	35686469	35690937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_35686523_35687479_35689745_35690389
ENSMUSG00000117869.2_2	chr18	+	3804	2	FSM	ENSMUSG00000117869.2_ENSMUSG00002076696.1	ENSMUST00000235976.2	613	2	-2709	-482	8	-4	multi-exon	FALSE	canonical	3	202	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTGACATTGGAATTTC	NA	False	NA	NA	False	NA	NA	NA	35686482	35690931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35689745_35690389
ENSMUSG00000117869.2_3	chr18	+	3510	2	FSM	ENSMUSG00000117869.2_ENSMUSG00000065649.3	ENSMUST00000235277.2	1586	2	-12	-1912	0	-6	multi-exon	FALSE	canonical	3	167	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTTGACATTGGAATT	NA	False	NA	NA	False	NA	NA	NA	35686462	35690929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_35686523_35687479
ENSMUSG00000117916.2_0	chr17	-	2148	2	FSM	ENSMUSG00000117916.2	ENSMUST00000235429.2	2149	2	1	0	1	0	multi-exon	TRUE	canonical	3	72	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATACTCCGACTTGGGTT	6250	False	NA	-9	True	NA	NA	NA	27461632	27454048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_27456112_27461547
ENSMUSG00000117916.2_2	chr17	-	1141	1	ISM	ENSMUSG00000117916.2	ENSMUST00000235429.2	2149	2	6444	0	6444	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATACTCCGACTTGGGTT	NA	False	NA	-9	True	NA	NA	NA	27455189	27454048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_27454000_27455200
ENSMUSG00000117916.2_3	chr17	-	2299	3	NIC	ENSMUSG00000117916.2	novel	2579	3	NA	NA	19	5	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	3.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGACTTGGGTTTTTTT	6268	False	NA	-4	True	NA	NA	NA	27461614	27454043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_27456112_27458358_27458523_27461547
ENSMUSG00000117924.2_0	chr19	+	721	2	FSM	ENSMUSG00000117924.2	ENSMUST00000010248.4	748	2	8	19	8	-19	multi-exon	FALSE	canonical	3	838	junction_1	0	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATGCCTACTTAAGCCA	6527	False	NA	NA	False	AATAAA	-19	NA	8748367	8749820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_8748680_8749411
ENSMUSG00000117924.2_2	chr19	+	1429	1	NIC	ENSMUSG00000117924.2	novel	748	2	NA	NA	32	-19	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATGCCTACTTAAGCCA	6551	False	NA	NA	False	AATAAA	-19	NA	8748391	8749820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_8748400_8749800
ENSMUSG00000117942.2_0	chr18	+	3122	10	NIC	ENSMUSG00000117942.2	novel	2235	8	NA	NA	-2648	-20	combination_of_known_splicesites	FALSE	canonical	3	120	junction_4	25.9420055955778	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAACTTTCAAAAAACTG	NA	False	NA	13	True	NA	NA	NA	36778264	36798950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000117942.2_1	chr18	+	2998	9	NIC	ENSMUSG00000117942.2	novel	2235	8	NA	NA	-1062	-9	combination_of_known_splicesites	FALSE	canonical	3	120	junction_3	26.4619420111223	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36779850	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000117942.2_2	chr18	+	2345	8	FSM	ENSMUSG00000117942.2	ENSMUST00000140061.8	2235	8	-119	9	-119	-9	multi-exon	FALSE	canonical	3	120	junction_2	28.281384950067	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36780793	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000117942.2_3	chr18	+	2393	8	NIC	ENSMUSG00000117942.2	novel	2235	8	NA	NA	-218	-9	combination_of_known_splicesites	FALSE	canonical	3	35	junction_2	54.257887604909	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36780694	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_36781794_36787145_36787320_36788526_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000117942.2_4	chr18	+	1095	6	ISM	ENSMUSG00000117942.2	ENSMUST00000140061.8	2235	8	7639	9	7639	-9	3prime_fragment	FALSE	canonical	3	172	junction_3	14.3749782608531	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	5298	False	NA	24	True	AGTAAA	-6	NA	36788551	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_+_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000117942.2_7	chr18	+	3000	9	NIC	ENSMUSG00000117942.2	novel	2235	8	NA	NA	-1115	-9	combination_of_known_splicesites	FALSE	canonical	3	35	junction_3	50.8674748734395	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTGTCTTGGCTCCA	NA	False	NA	24	True	AGTAAA	-6	NA	36779797	36798961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_36779894_36780183_36781794_36787145_36787320_36788526_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
ENSMUSG00000117959.2_0	chr19	+	492	1	FSM	ENSMUSG00000117959.2	ENSMUST00000237256.2	1266	1	527	247	527	-247	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTTTGTTTCTAGTTT	NA	False	NA	NA	False	TATAAA	-16	NA	5438890	5439382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5438900_5439400
ENSMUSG00000117975.2_0	chr19	-	3764	2	NIC	ENSMUSG00000117975.2	novel	351	3	NA	NA	3	2	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGAGTAGAGTTTGCTT	6777	False	NA	NA	False	ATTAAA	-18	NA	47907735	47883038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_47886630_47907562
ENSMUSG00000118038.2_2	chr19	+	695	2	FSM	ENSMUSG00000118038.2	ENSMUST00000235636.2	618	2	-80	3	-80	-3	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	29044666	29046900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_29044983_29046521
ENSMUSG00000118071.2_0	chr17	-	711	1	FSM	ENSMUSG00000118071.2	ENSMUST00000235397.2	2911	1	1402	798	1402	-798	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGAGCTGAAGATATGG	7381	False	NA	NA	False	ATTAAA	-16	NA	31783264	31782553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31782600_31783300
ENSMUSG00000118087.2_0	chr19	-	1003	1	Genic_Genomic	ENSMUSG00000118087.2	novel	NA	NA	NA	NA	1018	6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGACATTTCGCTGCCT	NA	False	NA	NA	False	AATAAA	-23	NA	46293026	46292023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_-_46292000_46293000
ENSMUSG00000118099.2_0	chr19	+	1875	2	ISM	ENSMUSG00000118099.2	ENSMUST00000237370.2	1560	3	33	12856	33	-12856	5prime_fragment	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGATAGATAGATAGATA	NA	False	NA	NA	False	NA	NA	NA	55087966	55093391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_+_55088065_55091614
ENSMUSG00000118100.2_0	chr19	+	570	2	FSM	ENSMUSG00000118100.2	ENSMUST00000235252.2	330	2	-243	3	-2	-3	multi-exon	FALSE	canonical	3	13	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGCTCAT	NA	False	NA	NA	False	NA	NA	NA	9877055	9878472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_9877385_9878231
ENSMUSG00000118106.2_0	chr19	+	2301	1	FSM	ENSMUSG00000118106.2	ENSMUST00000235511.2	2276	1	-28	3	-28	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAATTTTTTATTAGATAT	NA	False	NA	NA	False	AATAAA	-11	NA	32463294	32465595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_32463300_32465600
ENSMUSG00000118107.2_0	chr17	-	160	1	Genic_Genomic	ENSMUSG00000118107.2	novel	NA	NA	NA	NA	23196	6	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26686687	26686527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_26686500_26686700
ENSMUSG00000118125.2_0	chr19	-	1207	2	FSM	ENSMUSG00000024939.7	ENSMUST00000099955.4	1197	2	-11	1	-9	-1	multi-exon	FALSE	canonical	3	87	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGATTGCCTGGTTAAT	NA	False	NA	-2	True	AATAAA	-16	NA	5779690	5778115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5778897_5779264
ENSMUSG00000118125.2_1	chr19	-	2526	5	FSM	ENSMUSG00000118125.2	ENSMUST00000160852.8	2532	5	6	0	6	0	multi-exon	FALSE	canonical	3	87	junction_1	171.430744033852	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGATTGCCTGGTTAAT	NA	False	NA	-2	True	AATAAA	-16	NA	5781735	5778115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5778897_5779264_5780741_5781268_5781354_5781471_5781624_5781703
ENSMUSG00000118125.2_9	chr19	-	656	4	FSM	ENSMUSG00000079478.10	ENSMUST00000025885.6	699	4	20	23	-8	-19	multi-exon	FALSE	canonical	3	466	junction_2	15.6276108929747	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACAGTTTTTCCTCCGC	NA	False	NA	-20	True	NA	NA	NA	5781735	5780353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5780741_5781268_5781354_5781471_5781624_5781703
ENSMUSG00000118135.2_0	chr17	-	1347	3	FSM	ENSMUSG00000057411.10	ENSMUST00000236842.2	1886	3	531	8	3	-2	multi-exon	FALSE	canonical	3	227	junction_2	3.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGACTTTTGTTTGTT	8395	False	NA	-9	True	AATAAA	-15	NA	26011344	26009481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26009753_26009906_26009958_26010319
ENSMUSG00000118135.2_1	chr17	-	1501	2	FSM	ENSMUSG00000057411.10	ENSMUST00000237703.2	1528	2	25	2	3	-2	multi-exon	FALSE	canonical	3	227	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGACTTTTGTTTGTT	8395	False	NA	-9	True	AATAAA	-15	NA	26011344	26009481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_26009958_26010319
ENSMUSG00000118135.2_3	chr17	-	1732	2	ISM	ENSMUSG00000118135.2	ENSMUST00000235889.2	757	4	3266	8	3266	-8	intron_retention	FALSE	canonical	3	234	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGACTTTTGTTTGTT	8372	False	NA	-9	True	AATAAA	-15	NA	26011367	26009481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr17_-_26009753_26009906
ENSMUSG00000118138.2_0	chr19	-	2456	1	FSM	ENSMUSG00000118138.2	ENSMUST00000235839.2	4072	1	1613	3	1613	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAAGAGTTTGAGAATGG	NA	False	NA	-7	True	NA	NA	NA	9844746	9842290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_9842300_9844700
ENSMUSG00000118161.2_0	chr17	-	276	1	FSM	ENSMUSG00000118161.2	ENSMUST00000236305.2	882	1	648	-42	648	42	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	7927	False	NA	NA	False	AATAAA	-19	NA	31863105	31862829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_31862800_31863100
ENSMUSG00000118216.2_0	chr18	-	3008	2	ISM	ENSMUSG00000118216.2	ENSMUST00000235553.2	671	3	15948	-2468	15934	-3	3prime_fragment	FALSE	canonical	3	8	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTACTTTTGGTCAGCG	NA	False	NA	NA	False	NA	NA	NA	67067098	67056544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr18_-_67059444_67066989
ENSMUSG00000118243.2_0	chr19	+	808	1	FSM	ENSMUSG00000118243.2	ENSMUST00000236582.2	833	1	1	24	1	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTAAATAAATGTATTCT	9577	False	NA	NA	False	AATAAA	-25	NA	5345224	5346032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_5345200_5346000
ENSMUSG00000118263.2_0	chr19	-	500	2	FSM	ENSMUSG00000118263.2	ENSMUST00000235637.2	405	2	-96	1	-96	-1	multi-exon	FALSE	canonical	3	25	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAAGTTCTTTACTCTTT	9104	False	NA	-4	True	NA	NA	NA	5357540	5355906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_5356162_5357295
ENSMUSG00000118282.2_0	chr18	-	2392	1	FSM	ENSMUSG00000118282.2	ENSMUST00000237083.2	1810	1	-171	-411	-171	411	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAATTAAAAATA	NA	False	NA	NA	False	NA	NA	NA	46490205	46487813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_46487800_46490200
ENSMUSG00000118332.2_0	chr5	+	2159	2	FSM	ENSMUSG00000118332.2	ENSMUST00000067145.12	2198	2	17	22	15	-22	multi-exon	FALSE	canonical	3	103	junction_1	0	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATATGTTTTATTTTG	NA	False	NA	4	True	AATAAA	-17	NA	143534477	143550258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143534890_143548511
ENSMUSG00000118332.2_1	chr5	+	930	2	FSM	ENSMUSG00000118332.2	ENSMUST00000118121.2	919	2	-12	1	-12	-1	multi-exon	TRUE	canonical	3	93	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCCGGTGTTTTCCTAAT	NA	False	NA	8	True	AATAAA	-13	NA	143534488	143537692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143534890_143537163
ENSMUSG00000118332.2_2	chr5	+	2274	3	FSM	ENSMUSG00000118332.2	ENSMUST00000101434.5	2276	3	-22	24	-7	-24	multi-exon	FALSE	canonical	0	0	junction_2	46.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAAATATGTTTTATTT	NA	False	NA	2	True	AATAAA	-15	NA	143534493	143550256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_143534890_143537163_143537297_143548511
ENSMUSG00000118332.2_5	chr5	+	1227	1	ISM	ENSMUSG00000118332.2	ENSMUST00000067145.12	2198	2	14574	19	14519	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTTTTATTTTGTGT	306	False	NA	7	True	AATAAA	-20	NA	143549034	143550261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_143549000_143550300
ENSMUSG00000118342.2_0	chr19	-	158	1	Genic_Genomic	ENSMUSG00000118342.2	novel	NA	NA	NA	NA	2752	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATGTTTATTAAA	NA	False	NA	NA	False	NA	NA	NA	21287895	21287737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_-_21287700_21287900
ENSMUSG00000118346.2_0	chr19	-	830	5	FSM	ENSMUSG00000118346.2	ENSMUST00000010249.7	818	5	11	-23	-11	-3	multi-exon	FALSE	canonical	3	161	junction_4	40.2833712591188	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGGCATGGATTTCTTG	5085	False	NA	-8	True	AATATA	-13	NA	8751820	8749892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8751057_8751698
ENSMUSG00000118346.2_1	chr19	-	756	5	FSM	ENSMUSG00000118346.2	ENSMUST00000237634.2	775	5	15	4	-7	-3	multi-exon	FALSE	canonical	3	67	junction_4	80.9073544246751	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGGCATGGATTTCTTG	5089	False	NA	-8	True	AATATA	-13	NA	8751816	8749892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8750987_8751698
ENSMUSG00000118346.2_11	chr19	-	1004	4	NIC	ENSMUSG00000118346.2	novel	818	5	NA	NA	8	-3	intron_retention	FALSE	canonical	3	161	junction_3	44.0302926025556	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGGCATGGATTTCTTG	5104	False	NA	-8	True	AATATA	-13	NA	8751801	8749892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_8750471_8750653_8750789_8750868_8751057_8751698
ENSMUSG00000118346.2_16	chr19	-	1639	3	NIC	ENSMUSG00000118346.2	novel	818	5	NA	NA	5	-3	intron_retention	FALSE	canonical	3	249	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGGCATGGATTTCTTG	5101	False	NA	-8	True	AATATA	-13	NA	8751804	8749892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_8750199_8750391_8750789_8750868
ENSMUSG00000118346.2_3	chr19	-	1731	2	ISM	ENSMUSG00000118346.2	ENSMUST00000235756.2	499	3	-7	3	-7	-3	intron_retention	FALSE	canonical	3	253	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGGCATGGATTTCTTG	5089	False	NA	-8	True	AATATA	-13	NA	8751816	8749892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_8750199_8750391
ENSMUSG00000118346.2_4	chr19	-	623	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	-7	-1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	101.226917807908	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCATGGATTTCTTGAT	5089	False	NA	-6	True	AATATA	-15	NA	8751816	8749890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_8750199_8750391_8750471_8750868_8750987_8751698
ENSMUSG00000118346.2_5	chr19	-	636	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	-5	-3	combination_of_known_splicesites	FALSE	canonical	3	30	junction_3	106.565577097965	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGGCATGGATTTCTTG	5091	False	NA	-8	True	AATATA	-13	NA	8751814	8749892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_8750199_8750391_8750471_8750653_8750789_8751698
ENSMUSG00000118346.2_7	chr19	-	505	3	FSM	ENSMUSG00000118346.2	ENSMUST00000235756.2	499	3	-7	1	-7	-1	multi-exon	FALSE	canonical	3	14	junction_2	119.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCATGGATTTCTTGAT	5089	False	NA	-6	True	AATATA	-15	NA	8751816	8749890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_8750199_8750391_8750471_8751698
ENSMUSG00000118346.2_8	chr19	-	1466	4	ISM	ENSMUSG00000118346.2	ENSMUST00000237634.2	775	5	17	4	-5	-3	intron_retention	FALSE	canonical	3	249	junction_3	4.10960933531265	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGGCATGGATTTCTTG	5091	False	NA	-8	True	AATATA	-13	NA	8751814	8749892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868
ENSMUSG00000118346.2_9	chr19	-	684	4	NIC	ENSMUSG00000118346.2	novel	818	5	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	96.6885032807245	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATGGCATGGATTTCTTG	5096	False	NA	-8	True	AATATA	-13	NA	8751809	8749892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_8750199_8750391_8750471_8750868_8751057_8751698
ENSMUSG00000118444.2_1	chr7	+	171	1	ISM	ENSMUSG00000118444.2	ENSMUST00000238310.2	475	3	810	24	810	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23988543	23988714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_+_23988500_23988700
ENSMUSG00000118462.2_1	chr7	+	2289	6	FSM	ENSMUSG00000118462.2	ENSMUST00000238591.2	2278	6	-5	-6	-5	-3	multi-exon	TRUE	canonical	0	0	junction_4	1.01980390271856	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCTTCCATGTTCTTTAG	5290	False	NA	NA	False	AATAAA	-12	NA	45067771	45071275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_45067950_45068137_45068309_45068402_45068568_45069133_45069253_45069466_45070807_45070959
ENSMUSG00000118491.2_1	chr19	-	2670	13	FSM	ENSMUSG00000118491.2	ENSMUST00000142247.8	3221	13	682	-131	682	131	multi-exon	TRUE	canonical	0	0	junction_2	51.6306325956038	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTATCTTCATTCAAACT	NA	False	NA	NA	False	AATAAA	-16	NA	12772808	12740892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_12741745_12742644_12742771_12747540_12747914_12748366_12748467_12752183_12752299_12753358_12753438_12753775_12753827_12754223_12754359_12755305_12755411_12755987_12756025_12756256_12756464_12767623_12767653_12772347
ENSMUSG00000118504.2_0	chr3	+	1597	7	FSM	ENSMUSG00000027942.18	ENSMUST00000160640.8	2510	7	10	903	-5	-4	multi-exon	FALSE	canonical	3	422	junction_3	33.2549077413979	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCATGGATCATTTCTT	NA	False	NA	3	True	AATAAA	-13	NA	89960130	89969745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944
ENSMUSG00000118504.2_1	chr3	+	1628	10	FSM	ENSMUSG00000118504.2	ENSMUST00000239076.2	1545	10	-80	-3	-80	3	multi-exon	FALSE	canonical	3	22	junction_7	192.823529633307	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTGGGCTGGCAGGATG	NA	False	NA	10	True	AATAAA	-19	NA	89960130	89973182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944_89969240_89970515_89970557_89971731_89971862_89972816
ENSMUSG00000118504.2_2	chr3	+	2868	7	FSM	ENSMUSG00000027942.18	ENSMUST00000162114.8	1411	7	-18	-1439	-5	-9	multi-exon	FALSE	canonical	3	45	junction_6	165.248718267008	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGTAAAACCATGGATCAT	NA	False	NA	-2	True	AATAAA	-8	NA	89960130	89969740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89967668
ENSMUSG00000118504.2_20	chr3	+	3319	2	Fusion	ENSMUSG00000027942.18_ENSMUSG00000118506.2	novel	625	4	NA	NA	-1194	0	intron_retention	FALSE	canonical	3	130	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTGGGCTGGCAGGATG	5463	False	NA	10	True	AATAAA	-19	NA	89968908	89973182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr3_+_89971862_89972816
ENSMUSG00000118504.2_21	chr3	+	173	1	ISM	ENSMUSG00000118504.2	ENSMUST00000239082.2	2360	5	7140	14	7140	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAAAAGTTCAGATTT	9744	False	NA	1	True	NA	NA	NA	89973189	89973362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr3_+_89973200_89973400
ENSMUSG00000118504.2_9	chr3	+	1591	7	NNC	ENSMUSG00000027942.18	novel	2510	7	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	177.991026615264	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCATGGATCATTTCTT	NA	False	NA	3	True	AATAAA	-13	NA	89960135	89969745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966049_89966108_89968944
ENSMUSG00000118537.2_0	chr13	-	1581	2	FSM	ENSMUSG00000118537.2	ENSMUST00000133280.2	1609	2	24	4	24	-4	multi-exon	FALSE	canonical	3	68	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTATGTCTGATTTTGTA	NA	False	NA	NA	False	ATTAAA	-10	NA	104314923	104310233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_104311513_104314621
ENSMUSG00000118559.3_2	chr16	+	2820	1	FSM	ENSMUSG00000118559.3	ENSMUST00000239037.2	3972	1	0	1152	0	-1152	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTAAGCTTTGAATGCA	NA	False	NA	NA	False	NA	NA	NA	13572429	13575249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_13572400_13575200
ENSMUSG00000118572.2_0	chr17	-	1142	1	FSM	ENSMUSG00000118572.2	ENSMUST00000239094.2	615	1	-73	-454	-73	454	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTCTTGGGTTTTT	NA	False	NA	NA	False	GATAAA	-18	NA	23919160	23918018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_23918000_23919200
ENSMUSG00000118626.2_0	chr8	+	158	1	FSM	ENSMUSG00000118626.2	ENSMUST00000239289.2	1187	1	900	129	900	-129	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATAAATAAATAAATAAACC	NA	False	NA	NA	False	NA	NA	NA	88837313	88837471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_88837300_88837500
ENSMUSG00000118653.2_0	chr9	+	984	1	FSM	ENSMUSG00000118653.2	ENSMUST00000239472.2	988	1	-21	25	-21	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	56344719	56345703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_56344700_56345700
ENSMUSG00000118662.2_0	chr5	+	2410	18	FSM	ENSMUSG00000118662.2	ENSMUST00000239501.2	2735	18	40	285	2	-285	multi-exon	FALSE	canonical	3	31	junction_8	6.97499240366195	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATCCCTAGTGTTAAGT	NA	False	NA	29	True	AATAAA	-19	NA	124736851	124765518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124737020_124737197_124737306_124737769_124737847_124740077_124740274_124741810_124741912_124745798_124745996_124746581_124746706_124748332_124748475_124750706_124750773_124753213_124753349_124754531_124754610_124757093_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
ENSMUSG00000118662.2_2	chr5	+	2596	17	FSM	ENSMUSG00000118662.2	ENSMUST00000239505.1	2913	17	32	285	-3	-285	multi-exon	TRUE	canonical	3	31	junction_7	7.03451313169575	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATCCCTAGTGTTAAGT	NA	False	NA	29	True	AATAAA	-19	NA	124736843	124765518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_124737306_124737769_124737847_124740077_124740274_124741810_124741912_124745798_124745996_124746581_124746706_124748332_124748475_124750706_124750773_124753213_124753349_124754531_124754610_124757093_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
ENSMUSG00000118662.2_8	chr5	+	2722	10	ISM	ENSMUSG00000118662.2	ENSMUST00000239505.1	2913	17	12470	285	12427	-285	3prime_fragment	FALSE	canonical	3	33	junction_1	6.45975193499939	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATCCCTAGTGTTAAGT	NA	False	NA	29	True	AATAAA	-19	NA	124749281	124765518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_+_124750773_124753213_124753349_124754531_124754610_124757093_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
ENSMUSG00000118663.1_2	chr2	+	2317	8	FSM	ENSMUSG00000118663.1	ENSMUST00000239506.1	2347	8	-3	33	-3	0	multi-exon	FALSE	canonical	3	8	junction_2	2.6954231805876	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGAAGTAGTTTGCAAGT	NA	False	NA	NA	False	ATTAAA	-23	NA	122461116	122474717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_122462241_122462999_122463186_122466452_122466612_122469669_122469880_122471036_122471230_122472613_122472745_122473758_122473885_122474529
ENSMUSG00000118663.1_5	chr2	+	2106	7	NIC	ENSMUSG00000118663.1	novel	2347	8	NA	NA	7	-8	combination_of_known_junctions	FALSE	canonical	3	7	junction_4	3.21455025366432	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTTCATATGAAGTAGT	NA	False	NA	NA	False	ATTAAA	-15	NA	122461126	122474709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_122462241_122462999_122463186_122466452_122466612_122469669_122469880_122472613_122472745_122473758_122473885_122474529
ENSMUSG00000118664.1_0	chr8	+	1491	10	FSM	ENSMUSG00000118664.1	ENSMUST00000239508.1	2747	10	42	1214	-21	-2	multi-exon	FALSE	canonical	3	137	junction_1	15.2153269054433	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCATGTTTTAGAATTGT	NA	False	NA	27	True	AATAAA	-17	NA	39473040	39618153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39617866
ENSMUSG00000118664.1_1	chr8	+	1588	9	NIC	ENSMUSG00000118664.1	novel	2747	10	NA	NA	25	168	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	47.9785108147387	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACTGTTACAAAAGTGTT	NA	False	NA	6	True	TATAAA	-6	NA	39473023	39618323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39593682_39593747_39597896_39597972_39610300_39610392_39617866
ENSMUSG00000118664.1_5	chr8	+	1734	11	FSM	ENSMUSG00000118664.1	ENSMUST00000239509.1	2811	11	42	1035	-21	177	multi-exon	FALSE	canonical	0	0	junction_10	62.7792959501777	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAGTGTTTTGTTATTC	NA	False	NA	15	True	TATAAA	-15	NA	39473040	39618332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39614047_39614112_39617866
ENSMUSG00000118665.1_0	chr5	-	4455	13	FSM	ENSMUSG00000118665.1	ENSMUST00000239512.1	4451	13	-5	1	-5	0	multi-exon	FALSE	canonical	3	163	junction_11	17.2980409937722	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAAAGTTTTGCATTT	NA	False	NA	NA	False	AATAAA	-33	NA	100648498	100589900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_100592137_100594382_100594586_100598478_100598617_100598764_100598868_100600130_100600203_100600859_100600952_100601798_100601997_100602293_100602368_100607444_100607662_100623547_100623691_100628056_100628181_100632998_100633715_100648359
ENSMUSG00000118665.1_2	chr5	-	3792	13	NIC	ENSMUSG00000118665.1	novel	4451	13	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_11	48.956542520439	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAAAGTTTTGCATTT	NA	False	NA	NA	False	AATAAA	-33	NA	100648498	100589900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100592137_100594382_100594586_100598478_100598617_100598764_100598868_100600130_100600203_100600859_100600952_100601798_100601997_100602293_100602368_100607444_100607662_100623547_100623691_100628056_100628181_100633661_100633715_100648359
ENSMUSG00000118665.1_38	chr5	-	1248	3	ISM	ENSMUSG00000118665.1	ENSMUST00000239512.1	4451	13	-5	37888	-5	4412	5prime_fragment	FALSE	canonical	3	163	junction_1	22.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTAGAATAGTTATAGC	NA	False	NA	NA	False	NA	NA	NA	100648498	100627787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr5_-_100628181_100632998_100633715_100648359
ENSMUSG00000118666.1_0	chr13	-	2714	4	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7318	962	intron_retention	FALSE	canonical	3	55	junction_2	9.53356643071673	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	1876	False	NA	-6	True	NA	NA	NA	66439283	66427987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_66430404_66431569_66431631_66431830_66431958_66439173
ENSMUSG00000118666.1_1	chr13	-	2617	5	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7304	962	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	30.4415423393756	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	1890	False	NA	-6	True	NA	NA	NA	66439269	66427987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_66429686_66429768_66430404_66431569_66431631_66431830_66431958_66439173
ENSMUSG00000118666.1_10	chr13	-	2637	6	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-65369	962	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	33.9623320754038	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	-6	True	NA	NA	NA	66497334	66427987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_66429686_66429768_66430404_66431569_66431631_66431830_66431958_66439173_66439270_66497314
ENSMUSG00000118667.1_0	chr12	-	4557	1	ISM	ENSMUSG00000118667.1	ENSMUST00000239525.1	11349	7	23090	3	23090	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTGTCCGGTTCGCCA	NA	False	NA	NA	False	AATAAA	-13	NA	112743187	112738630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr12_-_112738600_112743200
ENSMUSG00000118668.1_0	chr19	-	3119	17	FSM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	21	0	1	0	multi-exon	FALSE	canonical	3	33	junction_16	8.80961832317383	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGATCTGTGGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	6817983	6806577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_6807508_6807682_6807847_6807954_6808115_6808358_6808554_6808641_6808816_6809135_6809230_6809318_6809453_6809623_6809753_6812468_6812634_6814694_6814846_6814947_6815052_6815123_6815205_6815422_6815531_6816619_6816736_6816827_6817047_6817701_6817774_6817860
ENSMUSG00000118668.1_8	chr19	-	1732	5	ISM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	9080	0	8029	0	3prime_fragment	FALSE	canonical	3	46	junction_1	7.08431365765238	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGATCTGTGGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	6808924	6806577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr19_-_6807508_6807682_6807847_6807954_6808115_6808358_6808554_6808641
ENSMUSG00000118668.1_9	chr19	-	3166	16	NIC	ENSMUSG00000118668.1	novel	3140	17	NA	NA	0	5	intron_retention	FALSE	canonical	1	1	junction_15	14.2791222886189	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGTGGTTTGTGTTCAT	NA	False	NA	-1	True	AATAAA	-23	NA	6817984	6806572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_6807508_6807682_6807847_6807954_6808115_6808358_6808554_6808641_6808816_6809135_6809230_6809318_6809453_6809623_6809753_6812468_6812634_6814694_6814846_6814947_6815052_6815123_6815205_6815422_6815531_6816619_6816736_6816827_6817047_6817747
ENSMUSG00000118669.2_0	chr16	+	3916	19	FSM	ENSMUSG00000118669.2	ENSMUST00000239533.1	4698	19	54	728	-38	92	multi-exon	FALSE	canonical	3	22	junction_2	90.4391378459624	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGCAGCAAAGAACTG	NA	False	NA	-5	True	AAGAAA	-12	NA	18166099	18225098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18166321_18170649_18170702_18207024_18207256_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851_18223972_18224356
ENSMUSG00000118669.2_17	chr16	+	3519	17	FSM	ENSMUSG00000118669.2	ENSMUST00000239547.1	4232	17	-10	723	-10	92	multi-exon	FALSE	canonical	3	221	junction_7	30.582815333942	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGCAGCAAAGAACTG	NA	False	NA	-5	True	AAGAAA	-12	NA	18210470	18225098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851_18223972_18224356
ENSMUSG00000118669.2_22	chr16	+	3395	16	NIC	ENSMUSG00000118669.2	novel	4232	17	NA	NA	-6	92	combination_of_known_junctions	FALSE	canonical	3	13	junction_15	67.3057369190935	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGCAGCAAAGAACTG	NA	False	NA	-5	True	AAGAAA	-12	NA	18210474	18225098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18224356
ENSMUSG00000118669.2_71	chr16	+	2440	14	ISM	ENSMUSG00000118669.2	ENSMUST00000239547.1	4232	17	6390	712	-967	103	3prime_fragment	FALSE	canonical	3	221	junction_4	28.3308851477401	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAACTGCCTGTCTTCTG	2883	False	NA	6	True	ATTAAA	-9	NA	18216870	18225109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr16_+_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851_18223972_18224356
ENSMUSG00000118671.1_0	chr15	-	3350	1	NIC	ENSMUSG00000118671.1	novel	12332	3	NA	NA	27708	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGGACTCATTTGCTCT	5285	False	NA	-8	True	AATAAA	-16	NA	75976687	75973337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_75973300_75976700
ENSMUSG00000118970.1_0	chr10	-	105	1	FSM	ENSMUSG00000118970.1	ENSMUST00000240313.1	107	1	3	-1	3	1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAAGATCTCAGAAGAT	NA	False	NA	NA	False	NA	NA	NA	117498290	117498185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_117498200_117498300
ENSMUSG00000119145.1_0	chr8	-	108	1	FSM	ENSMUSG00000119145.1	ENSMUST00000239699.1	107	1	1	-2	1	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGTGTTCCACCATCCA	NA	False	NA	NA	False	NA	NA	NA	7478327	7478219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_7478200_7478300
ENSMUSG00000119584.1_0	chr17	+	1873	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	604	-628	604	628	mono-exon	FALSE	NA	NA	NA	NA	NA	523	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40157847	40159720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_+_40157800_40159700
ENSMUSG00000119657.1_0	chr1	-	109	1	FSM	ENSMUSG00000119657.1	ENSMUST00000239682.1	107	1	1	-3	1	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCAGAACAACAAATGCAC	NA	False	NA	NA	False	NA	NA	NA	54288366	54288257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_54288300_54288400
ENSMUSG00000119807.1_0	chr11	-	108	1	FSM	ENSMUSG00000119807.1	ENSMUST00000240522.1	107	1	1	-2	1	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGGTGAGATGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	4274254	4274146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_4274100_4274300
ENSMUSG00000119891.1_0	chr3	+	102	1	FSM	ENSMUSG00000119891.1	ENSMUST00000239941.1	107	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGATCTTCGACAAGGG	5635	False	NA	NA	False	NA	NA	NA	103334753	103334855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_103334800_103334900
ENSMUSG00002075770.1_0	chr4	-	637	3	FSM	ENSMUSG00000058579.6	ENSMUST00000127962.2	468	3	-170	1	-170	-1	multi-exon	FALSE	canonical	3	93	junction_1	12.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTTGAATGAGTCTGTCT	365	False	NA	-3	True	AATAAA	-17	NA	141546683	141542273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_141542367_141545175_141545329_141546292
ENSMUSG00002076083.1_0	chr4	-	2929	11	NIC	ENSMUSG00002076083.1	novel	2723	12	NA	NA	-28	-2	intron_retention	TRUE	canonical	3	41	junction_7	13.8596536753268	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCCATCTTTGGCCCCC	8277	False	NA	-7	True	AATAAA	-33	NA	156319285	156313798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_156315144_156315357_156315432_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317203_156317680_156317903_156318048_156318171_156318259_156318520_156319112
ENSMUSG00002076083.1_11	chr4	-	3410	10	NIC	ENSMUSG00002076083.1	novel	2723	12	NA	NA	26	-2	intron_retention	FALSE	canonical	3	45	junction_2	11.6999525165228	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCCATCTTTGGCCCCC	8274	False	NA	-7	True	AATAAA	-33	NA	156319288	156313798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_156315144_156315357_156315432_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317903_156318048_156318171_156318259_156318520_156319112
ENSMUSG00002076083.1_13	chr4	-	2854	11	NIC	ENSMUSG00002076083.1	novel	2723	12	NA	NA	-26	-8	intron_retention	FALSE	canonical	3	10	junction_7	20.8076908858239	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGAATGTCCATCTTTG	8279	False	NA	-13	True	AATAAA	-27	NA	156319283	156313804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_156315144_156315357_156315432_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317203_156317747_156317903_156318048_156318171_156318259_156318520_156319112
ENSMUSG00002076083.1_15	chr4	-	3724	8	NIC	ENSMUSG00002076083.1	novel	2830	11	NA	NA	-27	-8	intron_retention	FALSE	canonical	3	62	junction_3	9.15624020512118	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGAATGTCCATCTTTG	8278	False	NA	-13	True	AATAAA	-27	NA	156319284	156313804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317903_156318048_156318171_156318259_156318520_156319112
ENSMUSG00002076083.1_22	chr4	-	3519	9	NIC	ENSMUSG00002076083.1	novel	2830	11	NA	NA	27	-2	intron_retention	FALSE	canonical	3	62	junction_4	8.67377512966528	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCCATCTTTGGCCCCC	8275	False	NA	-7	True	AATAAA	-33	NA	156319287	156313798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_156315144_156315357_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317903_156318048_156318171_156318259_156318520_156319112
ENSMUSG00002076083.1_34	chr4	-	3160	11	NIC	ENSMUSG00002076083.1	novel	2723	12	NA	NA	19	0	intron_retention	FALSE	canonical	3	34	junction_1	15.2105226734652	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGCCTGAGGCTGAATGT	8267	False	NA	-22	True	AATAAA	-18	NA	156319295	156313813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_156314720_156314961_156315144_156315357_156315432_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317903_156318048_156318171_156318259_156318520_156319112
ENSMUSG00002076083.1_4	chr4	-	2687	12	FSM	ENSMUSG00002076083.1	ENSMUST00000105569.5	2723	12	23	13	23	-8	multi-exon	TRUE	canonical	3	34	junction_1	16.0850014835956	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGAATGTCCATCTTTG	8271	False	NA	-13	True	AATAAA	-27	NA	156319291	156313804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_156314720_156314961_156315144_156315357_156315432_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317203_156317680_156317903_156318048_156318171_156318259_156318520_156319112
ENSMUSG00002076161.1_0	chr9	-	327	1	FSM	ENSMUSG00002076161.1	ENSMUST00020183253.1	331	1	2	2	2	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGTTCCTGCAATTTA	NA	False	NA	-3	True	NA	NA	NA	78082913	78082586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_78082600_78082900
ERCC-00002A_0	ERCC-00002	+	1042	1	FSM	ERCC-00002A	DQ459430	1045	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	16629	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TT	NA	False	NA	NA	False	NA	NA	NA	1	1043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00002_+_0_1000
ERCC-00003A_0	ERCC-00003	+	999	1	FSM	ERCC-00003A	DQ516784	1007	1	1	7	1	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1051	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGAT	NA	False	NA	NA	False	AAAAAG	-23	NA	1	1000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00003_+_0_1000
ERCC-00004A_0	ERCC-00004	+	502	1	FSM	ERCC-00004A	DQ516752	507	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2884	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAT	NA	False	NA	NA	False	GATAAA	-35	NA	1	503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00004_+_0_500
ERCC-00009A_0	ERCC-00009	+	963	1	FSM	ERCC-00009A	DQ668364	968	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	563	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAT	NA	False	NA	NA	False	NA	NA	NA	1	964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00009_+_0_1000
ERCC-00013A_0	ERCC-00013	+	783	1	FSM	ERCC-00013A	EF011062	792	1	1	8	1	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGAGT	NA	False	NA	NA	False	NA	NA	NA	1	784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00013_+_0_800
ERCC-00019A_0	ERCC-00019	+	623	1	FSM	ERCC-00019A	DQ883651	627	1	2	2	2	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TG	NA	False	NA	NA	False	NA	NA	NA	2	625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00019_+_0_600
ERCC-00022A_0	ERCC-00022	+	732	1	FSM	ERCC-00022A	DQ855004	735	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AT	NA	False	NA	NA	False	NA	NA	NA	1	733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00022_+_0_700
ERCC-00025A_0	ERCC-00025	+	1973	1	FSM	ERCC-00025A	DQ883689	1978	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCT	NA	False	NA	NA	False	NA	NA	NA	1	1974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00025_+_0_2000
ERCC-00028A_0	ERCC-00028	+	1118	1	FSM	ERCC-00028A	DQ459419	1120	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	C	NA	False	NA	NA	False	NA	NA	NA	1	1119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00028_+_0_1100
ERCC-00033A_0	ERCC-00033	+	2010	1	FSM	ERCC-00033A	DQ516796	2014	1	1	3	1	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGC	NA	False	NA	NA	False	NA	NA	NA	1	2011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00033_+_0_2000
ERCC-00034A_0	ERCC-00034	+	996	1	FSM	ERCC-00034A	DQ855001	1003	1	2	5	2	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATAT	NA	False	NA	NA	False	NA	NA	NA	2	998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00034_+_0_1000
ERCC-00035A_0	ERCC-00035	+	1113	1	FSM	ERCC-00035A	DQ459413	1114	1	1	0	1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	1	1114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00035_+_0_1100
ERCC-00042A_0	ERCC-00042	+	995	1	FSM	ERCC-00042A	DQ516783	1007	1	2	10	2	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	299	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAATCT	NA	False	NA	NA	False	NA	NA	NA	2	997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00042_+_0_1000
ERCC-00043A_0	ERCC-00043	+	1004	1	FSM	ERCC-00043A	DQ516787	1007	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	404	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TT	NA	False	NA	NA	False	TATAAA	-10	NA	1	1005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00043_+_0_1000
ERCC-00044A_0	ERCC-00044	+	1146	1	FSM	ERCC-00044A	DQ459424	1149	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AG	NA	False	NA	NA	False	AAAAAG	-25	NA	1	1147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00044_+_0_1100
ERCC-00046A_0	ERCC-00046	+	498	1	FSM	ERCC-00046A	DQ516748	506	1	2	6	2	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	1591	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGT	NA	False	NA	NA	False	NA	NA	NA	2	500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00046_+_0_500
ERCC-00051A_0	ERCC-00051	+	255	1	FSM	ERCC-00051A	DQ516740	258	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AT	NA	False	NA	NA	False	NA	NA	NA	1	256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00051_+_0_300
ERCC-00053A_0	ERCC-00053	+	1005	1	FSM	ERCC-00053A	DQ516785	1007	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	1	1006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00053_+_0_1000
ERCC-00054A_0	ERCC-00054	+	252	1	FSM	ERCC-00054A	DQ516731	256	1	1	3	1	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACC	NA	False	NA	NA	False	NA	NA	NA	1	253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00054_+_0_300
ERCC-00059A_0	ERCC-00059	+	503	1	FSM	ERCC-00059A	DQ668356	509	1	1	5	1	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATT	NA	False	NA	NA	False	NA	NA	NA	1	504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00059_+_0_500
ERCC-00060A_0	ERCC-00060	+	500	1	FSM	ERCC-00060A	DQ516763	506	1	1	5	1	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	453	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGC	NA	False	NA	NA	False	NA	NA	NA	1	501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00060_+_0_500
ERCC-00062A_0	ERCC-00062	+	1003	1	FSM	ERCC-00062A	DQ516786	1007	1	2	2	2	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TT	NA	False	NA	NA	False	AATACA	-34	NA	2	1005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00062_+_0_1000
ERCC-00067A_0	ERCC-00067	+	625	1	FSM	ERCC-00067A	DQ883653	628	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CC	NA	False	NA	NA	False	NA	NA	NA	1	626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00067_+_0_600
ERCC-00069A_0	ERCC-00069	+	1119	1	FSM	ERCC-00069A	DQ459421	1121	1	2	0	2	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	2	1121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00069_+_0_1100
ERCC-00071A_0	ERCC-00071	+	621	1	FSM	ERCC-00071A	DQ883654	626	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTT	NA	False	NA	NA	False	NA	NA	NA	1	622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00071_+_0_600
ERCC-00074A_0	ERCC-00074	+	496	1	FSM	ERCC-00074A	DQ516754	506	1	1	9	1	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	16536	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	1	497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00074_+_0_500
ERCC-00076A_0	ERCC-00076	+	623	1	FSM	ERCC-00076A	DQ883650	626	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GT	NA	False	NA	NA	False	NA	NA	NA	1	624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00076_+_0_600
ERCC-00077A_0	ERCC-00077	+	255	1	FSM	ERCC-00077A	DQ516742	258	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CC	NA	False	NA	NA	False	AATAAA	-31	NA	1	256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00077_+_0_300
ERCC-00078A_0	ERCC-00078	+	975	1	FSM	ERCC-00078A	DQ883673	977	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	1	976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00078_+_0_1000
ERCC-00079A_0	ERCC-00079	+	621	1	FSM	ERCC-00079A	DQ883652	628	1	2	5	2	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACC	NA	False	NA	NA	False	NA	NA	NA	2	623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00079_+_0_600
ERCC-00084A_0	ERCC-00084	+	949	1	FSM	ERCC-00084A	DQ883682	978	1	1	28	1	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCCGCTTCTCAGTTGCA	NA	False	NA	NA	False	NA	NA	NA	1	950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00084_+_0_1000
ERCC-00085A_0	ERCC-00085	+	828	1	FSM	ERCC-00085A	DQ883669	828	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00085_+_0_800
ERCC-00092A_0	ERCC-00092	+	1106	1	FSM	ERCC-00092A	DQ459425	1108	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	325	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	G	NA	False	NA	NA	False	NA	NA	NA	1	1107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00092_+_0_1100
ERCC-00095A_0	ERCC-00095	+	507	1	FSM	ERCC-00095A	DQ516759	513	1	2	4	2	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAT	NA	False	NA	NA	False	NA	NA	NA	2	509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00095_+_0_500
ERCC-00096A_0	ERCC-00096	+	1089	1	FSM	ERCC-00096A	DQ459429	1091	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	22381	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	G	NA	False	NA	NA	False	NA	NA	NA	1	1090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00096_+_0_1100
ERCC-00099A_0	ERCC-00099	+	1340	1	FSM	ERCC-00099A	DQ875387	1344	1	2	2	2	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AT	NA	False	NA	NA	False	NA	NA	NA	2	1342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00099_+_0_1300
ERCC-00108A_0	ERCC-00108	+	1000	1	FSM	ERCC-00108A	DQ668365	1005	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	463	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAT	NA	False	NA	NA	False	NA	NA	NA	1	1001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00108_+_0_1000
ERCC-00111A_0	ERCC-00111	+	975	1	FSM	ERCC-00111A	DQ883685	978	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CC	NA	False	NA	NA	False	NA	NA	NA	1	976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00111_+_0_1000
ERCC-00112A_0	ERCC-00112	+	1118	1	FSM	ERCC-00112A	DQ459422	1120	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	AGTAAA	-45	NA	1	1119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00112_+_0_1100
ERCC-00113A_0	ERCC-00113	+	816	1	FSM	ERCC-00113A	DQ883663	825	1	1	8	1	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	671	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	1	817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00113_+_0_800
ERCC-00116A_0	ERCC-00116	+	1974	1	FSM	ERCC-00116A	DQ668367	1977	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TC	NA	False	NA	NA	False	NA	NA	NA	1	1975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00116_+_0_2000
ERCC-00130A_0	ERCC-00130	+	1049	1	FSM	ERCC-00130A	EF011072	1051	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	16142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	G	NA	False	NA	NA	False	NA	NA	NA	1	1050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00130_+_0_1000
ERCC-00131A_0	ERCC-00131	+	753	1	FSM	ERCC-00131A	DQ855003	755	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	G	NA	False	NA	NA	False	NA	NA	NA	1	754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00131_+_0_800
ERCC-00136A_0	ERCC-00136	+	1022	1	FSM	ERCC-00136A	EF011063	1025	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	913	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AC	NA	False	NA	NA	False	NA	NA	NA	1	1023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00136_+_0_1000
ERCC-00144A_0	ERCC-00144	+	517	1	FSM	ERCC-00144A	DQ854995	521	1	1	3	1	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGC	NA	False	NA	NA	False	NA	NA	NA	1	518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00144_+_0_500
ERCC-00145A_0	ERCC-00145	+	1019	1	FSM	ERCC-00145A	DQ875386	1024	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	467	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATT	NA	False	NA	NA	False	AAAAAG	-42	NA	1	1020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00145_+_0_1000
ERCC-00150A_0	ERCC-00150	+	721	1	FSM	ERCC-00150A	DQ883659	727	1	1	5	1	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTC	NA	False	NA	NA	False	NA	NA	NA	1	722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00150_+_0_700
ERCC-00157A_0	ERCC-00157	+	999	1	FSM	ERCC-00157A	DQ839618	1003	1	2	2	2	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TC	NA	False	NA	NA	False	NA	NA	NA	2	1001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00157_+_0_1000
ERCC-00160A_0	ERCC-00160	+	725	1	FSM	ERCC-00160A	DQ883658	727	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	G	NA	False	NA	NA	False	NA	NA	NA	1	726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00160_+_0_700
ERCC-00162A_0	ERCC-00162	+	502	1	FSM	ERCC-00162A	DQ516750	507	1	2	3	2	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAT	NA	False	NA	NA	False	NA	NA	NA	2	504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00162_+_0_500
ERCC-00163A_0	ERCC-00163	+	522	1	FSM	ERCC-00163A	DQ668359	527	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGT	NA	False	NA	NA	False	NA	NA	NA	1	523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00163_+_0_500
ERCC-00165A_0	ERCC-00165	+	853	1	FSM	ERCC-00165A	DQ668363	856	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TG	NA	False	NA	NA	False	NA	NA	NA	1	854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00165_+_0_900
ERCC-00170A_0	ERCC-00170	+	1000	1	FSM	ERCC-00170A	DQ516773	1007	1	2	5	2	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTT	NA	False	NA	NA	False	NA	NA	NA	2	1002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00170_+_0_1000
ERCC-00171A_0	ERCC-00171	+	478	1	FSM	ERCC-00171A	DQ854994	489	1	1	10	1	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	1804	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACGAG	NA	False	NA	NA	False	NA	NA	NA	1	479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_ERCC-00171_+_0_500
PB_novel_00012_0	chr1	+	293	1	Intergenic	novelGene_4295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	AATAAA	-14	NA	4842471	4842764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_4842500_4842800
PB_novel_00019_0	chr1	+	1601	1	Genic_Genomic	ENSMUSG00000033813.16	novel	NA	NA	NA	NA	-2	-38493	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4928034	4929635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_+_4928000_4929600
PB_novel_00020_0	chr1	+	172	1	Intergenic	novelGene_4296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4942372	4942544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_4942400_4942500
PB_novel_00026_0	chr1	-	178	1	Intergenic	novelGene_4297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGGACTTCAA	NA	False	NA	NA	False	NA	NA	NA	5021237	5021059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_5021100_5021200
PB_novel_00031_0	chr1	-	1230	1	Intergenic	novelGene_4298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-17	NA	5210839	5209609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_5209600_5210800
PB_novel_00036_0	chr1	-	172	1	Intergenic	novelGene_4299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6154616	6154444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_6154400_6154600
PB_novel_00039_0	chr1	-	174	1	Intergenic	novelGene_4300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAGGAAGATATAA	NA	False	NA	NA	False	NA	NA	NA	6278447	6278273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_6278300_6278400
PB_novel_00041_0	chr1	+	1811	1	NIC	ENSMUSG00000025907.15	novel	7607	24	NA	NA	-55	592	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAAAACA	NA	False	NA	NA	False	TTTAAA	-38	NA	6320263	6322074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_6320300_6322100
PB_novel_00043_0	chr1	-	173	1	Intergenic	novelGene_4301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATATTTAAAAAAAA	4812	False	NA	NA	False	NA	NA	NA	6438750	6438577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_6438600_6438800
PB_novel_00058_0	chr1	-	3516	1	Antisense	novelGene_ENSMUSG00000051285.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGTAAAAAACAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	7239420	7235904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_7235900_7239400
PB_novel_00059_0	chr1	+	134	1	Intergenic	novelGene_4302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGCCTAAAAAAAATAATAA	NA	False	NA	NA	False	GATAAA	-13	NA	7249831	7249965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_7249800_7250000
PB_novel_00062_0	chr1	+	3693	1	Intergenic	novelGene_4303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-4	NA	7456346	7460039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_7456300_7460000
PB_novel_00065_0	chr1	+	173	1	Intergenic	novelGene_4304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	8560278	8560451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_8560300_8560500
PB_novel_00073_1	chr1	+	182	1	Intergenic	novelGene_4305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTTA	NA	False	NA	NA	False	NA	NA	NA	9024549	9024731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_9024500_9024700
PB_novel_00075_0	chr1	+	176	1	Intergenic	novelGene_4306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	264	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6236	False	NA	NA	False	NA	NA	NA	9456827	9457003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_9456800_9457000
PB_novel_00079_0	chr1	+	275	1	Intergenic	novelGene_4307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	9645983	9646258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_9646000_9646300
PB_novel_00081_0	chr1	-	176	1	Intergenic	novelGene_4308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAGTATGAG	NA	False	NA	NA	False	NA	NA	NA	9763269	9763093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_9763100_9763300
PB_novel_00082_0	chr1	-	176	1	Intergenic	novelGene_4309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAAATTATTTAT	NA	False	NA	NA	False	NA	NA	NA	9765049	9764873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_9764900_9765000
PB_novel_00088_0	chr1	+	201	1	Intergenic	novelGene_4310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGTTTTAAAAAACAACAAT	8122	False	NA	NA	False	NA	NA	NA	9844172	9844373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_9844200_9844400
PB_novel_00089_0	chr1	+	168	1	Intergenic	novelGene_4311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATTAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	9861016	9861184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_9861000_9861200
PB_novel_00090_0	chr1	-	184	1	Intergenic	novelGene_4312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	9877771	9877587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_9877600_9877800
PB_novel_00100_0	chr1	-	166	1	Intergenic	novelGene_4313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTTAGTAAAATAAATCA	296	False	NA	NA	False	NA	NA	NA	10008867	10008701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_10008700_10008900
PB_novel_00105_0	chr1	+	168	1	Intergenic	novelGene_4314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGGCA	7219	False	NA	NA	False	NA	NA	NA	10066482	10066650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_10066500_10066600
PB_novel_00114_0	chr1	+	1268	1	Intergenic	novelGene_4315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10299731	10300999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_10299700_10301000
PB_novel_00130_0	chr1	-	177	1	Intergenic	novelGene_4316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12176808	12176631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_12176600_12176800
PB_novel_00131_0	chr1	+	173	1	Intergenic	novelGene_4317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	12604802	12604975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_12604800_12605000
PB_novel_00132_0	chr1	+	176	1	Intergenic	novelGene_4318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	12705427	12705603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_12705400_12705600
PB_novel_00133_0	chr1	-	157	1	Intergenic	novelGene_4319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	12778814	12778657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_12778700_12778800
PB_novel_00136_0	chr1	-	169	1	Intergenic	novelGene_4320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12833329	12833160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_12833200_12833300
PB_novel_00144_0	chr1	-	173	1	Intergenic	novelGene_4321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13111360	13111187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_13111200_13111400
PB_novel_00145_0	chr1	+	184	1	Intergenic	novelGene_4322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13121895	13122079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_13121900_13122100
PB_novel_00154_0	chr1	+	160	1	Intergenic	novelGene_4323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	13188445	13188605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_13188400_13188600
PB_novel_00158_0	chr1	+	172	1	Intergenic	novelGene_4325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13586270	13586442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_13586300_13586400
PB_novel_00160_0	chr1	+	177	1	Intergenic	novelGene_4324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	13515537	13515714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_13515500_13515700
PB_novel_00162_0	chr1	-	175	1	Intergenic	novelGene_4326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATTAAGTCAAACAA	NA	False	NA	NA	False	NA	NA	NA	13606964	13606789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_13606800_13607000
PB_novel_00168_0	chr1	-	168	1	Intergenic	novelGene_4327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15012998	15012830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_15012800_15013000
PB_novel_00173_0	chr1	+	168	1	Intergenic	novelGene_4328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAAAACCAAAG	3076	False	NA	NA	False	NA	NA	NA	16056375	16056543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_16056400_16056500
PB_novel_00174_0	chr1	+	177	1	Intergenic	novelGene_4329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAATAGA	2111	False	NA	NA	False	NA	NA	NA	16108481	16108658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_16108500_16108700
PB_novel_00185_1	chr1	+	177	1	Intergenic	novelGene_4330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	249	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATACATGC	6805	False	NA	NA	False	NA	NA	NA	16716280	16716457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_16716300_16716500
PB_novel_00189_3	chr1	-	2819	2	Intergenic	novelGene_4331	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16905289	16902377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_16904173_16904265
PB_novel_00190_0	chr1	+	175	1	Intergenic	novelGene_4332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	17056000	17056175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_17056000_17056200
PB_novel_00191_0	chr1	+	6298	1	Intergenic	novelGene_4333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17124774	17131072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_17124800_17131100
PB_novel_00194_0	chr1	+	179	1	Intergenic	novelGene_4334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAGAAAACT	NA	False	NA	NA	False	NA	NA	NA	18188670	18188849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_18188700_18188800
PB_novel_00203_0	chr1	+	155	1	Intergenic	novelGene_4335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	20853105	20853260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_20853100_20853300
PB_novel_00204_0	chr1	-	175	1	Intergenic	novelGene_4336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAGATAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	21131278	21131103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_21131100_21131300
PB_novel_00215_1	chr1	+	176	1	Intergenic	novelGene_4337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	21405209	21405385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_21405200_21405400
PB_novel_00216_0	chr1	-	165	2	Intergenic	novelGene_4338	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTTTTAAAAAATCTGAAAA	NA	False	NA	NA	False	NA	NA	NA	21547279	21487938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_21488061_21547236
PB_novel_00219_0	chr1	+	209	1	Intergenic	novelGene_4339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACATCAAATAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-4	NA	22446159	22446368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_22446200_22446400
PB_novel_00225_0	chr1	+	181	1	Intergenic	novelGene_4340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAAATTAGTC	NA	False	NA	NA	False	NA	NA	NA	23895717	23895898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_23895700_23895900
PB_novel_00231_0	chr1	-	176	1	Intergenic	novelGene_4341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGGACAGA	NA	False	NA	NA	False	NA	NA	NA	24355548	24355372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_24355400_24355500
PB_novel_00239_0	chr1	+	175	1	Intergenic	novelGene_4342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	25093347	25093522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_25093300_25093500
PB_novel_00246_0	chr1	+	203	1	Intergenic	novelGene_4343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	28488031	28488234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_28488000_28488200
PB_novel_00248_0	chr1	+	177	1	Intergenic	novelGene_4344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	29942065	29942242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_29942100_29942200
PB_novel_00250_0	chr1	+	161	1	Intergenic	novelGene_4345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	30479055	30479216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_30479100_30479200
PB_novel_00251_0	chr1	-	177	1	Intergenic	novelGene_4346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	356	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30623495	30623318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_30623300_30623500
PB_novel_00255_0	chr1	-	177	1	Intergenic	novelGene_4347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31033759	31033582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_31033600_31033800
PB_novel_00260_0	chr1	+	168	1	Intergenic	novelGene_4348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	33029837	33030005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_33029800_33030000
PB_novel_00266_0	chr1	+	176	1	Intergenic	novelGene_4349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAATGGGACCTCATA	5824	False	NA	NA	False	NA	NA	NA	33744765	33744941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_33744800_33744900
PB_novel_00267_0	chr1	+	176	1	Intergenic	novelGene_4350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33757021	33757197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_33757000_33757200
PB_novel_00269_0	chr1	+	179	1	Intergenic	novelGene_4351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAATGA	NA	False	NA	NA	False	NA	NA	NA	33761856	33762035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_33761900_33762000
PB_novel_00274_0	chr1	-	171	1	Intergenic	novelGene_4352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATATATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	33821762	33821591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_33821600_33821800
PB_novel_00276_0	chr1	+	132	1	Intergenic	novelGene_4353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	33854522	33854654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_33854500_33854700
PB_novel_00278_0	chr1	+	176	1	Intergenic	novelGene_4354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAGAATTCTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33888549	33888725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_33888500_33888700
PB_novel_00282_0	chr1	-	157	1	Intergenic	novelGene_4355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	33924586	33924429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_33924400_33924600
PB_novel_00287_0	chr1	-	178	1	Intergenic	novelGene_4356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4857	False	NA	NA	False	NA	NA	NA	34069004	34068826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_34068800_34069000
PB_novel_00288_8	chr1	-	179	2	Antisense	novelGene_ENSMUSG00000103364.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34129729	34068826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_34068925_34129648
PB_novel_00293_0	chr1	-	1420	1	Intergenic	novelGene_4357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4338	False	NA	NA	False	AATAAA	-13	NA	34140238	34138818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_34138800_34140200
PB_novel_00299_0	chr1	+	159	1	Intergenic	novelGene_4358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	34286065	34286224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_34286100_34286200
PB_novel_00301_0	chr1	-	172	1	Intergenic	novelGene_4359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCTTTAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	34398704	34398532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_34398500_34398700
PB_novel_00309_0	chr1	+	175	1	Intergenic	novelGene_4360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAATTCAGAA	NA	False	NA	NA	False	NA	NA	NA	34568103	34568278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_34568100_34568300
PB_novel_00319_0	chr1	-	177	1	Intergenic	novelGene_4361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	34943292	34943115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_34943100_34943300
PB_novel_00331_0	chr1	+	177	1	Intergenic	novelGene_4362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	36019591	36019768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36019600_36019800
PB_novel_00339_1	chr1	+	182	1	Intergenic	novelGene_4363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	471	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36090765	36090947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36090800_36090900
PB_novel_00345_0	chr1	+	4488	1	Intergenic	novelGene_4364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36119644	36124132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36119600_36124100
PB_novel_00353_0	chr1	+	173	1	Intergenic	novelGene_4365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	36245968	36246141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36246000_36246100
PB_novel_00355_0	chr1	+	170	1	Intergenic	novelGene_4366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAGA	4862	False	NA	NA	False	NA	NA	NA	36313136	36313306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36313100_36313300
PB_novel_00357_1	chr1	+	175	1	Intergenic	novelGene_4367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAACAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	36344699	36344874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36344700_36344900
PB_novel_00358_0	chr1	+	1666	1	FSM	ENSMUSG00000102762.2	ENSMUST00000192234.2	713	1	-776	-177	-776	177	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-10	NA	36371012	36372678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_36371000_36372700
PB_novel_00359_1	chr1	+	4590	1	Antisense	novelGene_ENSMUSG00000010453.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAGGAAAAAAACAAAAAAA	9683	False	NA	NA	False	NA	NA	NA	36394175	36398765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_36394200_36398800
PB_novel_00363_0	chr1	+	3870	1	NIC	ENSMUSG00000001138.14	novel	5193	8	NA	NA	54	-3784	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGACAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36551001	36554871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_36551000_36554900
PB_novel_00364_0	chr1	+	3085	1	Antisense	novelGene_ENSMUSG00000067653.13_AS_novelGene_ENSMUSG00000109510.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36572912	36575997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_36572900_36576000
PB_novel_00365_0	chr1	+	173	1	Intergenic	novelGene_4368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTTAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	36580185	36580358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36580200_36580400
PB_novel_00366_0	chr1	+	171	1	Intergenic	novelGene_4369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAATCTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36583555	36583726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36583600_36583700
PB_novel_00368_0	chr1	+	173	1	Intergenic	novelGene_4370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACACCAC	NA	False	NA	NA	False	NA	NA	NA	36663454	36663627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36663500_36663600
PB_novel_00369_0	chr1	+	2491	1	Intergenic	novelGene_4371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAACAAAAAAAAAA	1746	False	NA	NA	False	NA	NA	NA	36693308	36695799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36693300_36695800
PB_novel_00370_0	chr1	-	174	1	Intergenic	novelGene_4372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACAAATGAACA	7994	False	NA	NA	False	NA	NA	NA	36701947	36701773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_36701800_36701900
PB_novel_00376_0	chr1	+	165	1	Intergenic	novelGene_4373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	36830368	36830533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36830400_36830500
PB_novel_00379_0	chr1	+	176	1	Intergenic	novelGene_4374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	36869482	36869658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36869500_36869700
PB_novel_00382_0	chr1	+	227	1	Intergenic	novelGene_4375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAGGTTAAAAAAACAACAA	8948	False	NA	NA	False	AATAAA	-18	NA	36892245	36892472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_36892200_36892500
PB_novel_00387_0	chr1	-	173	1	Intergenic	novelGene_4376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37073873	37073700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_37073700_37073900
PB_novel_00395_0	chr1	-	174	1	Intergenic	novelGene_4377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAGAGAGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	37250736	37250562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_37250600_37250700
PB_novel_00397_0	chr1	+	176	1	Intergenic	novelGene_4378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAATCTTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37275441	37275617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_37275400_37275600
PB_novel_00400_10	chr1	+	2311	15	Antisense	novelGene_ENSMUSG00000087233.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37483114	37575316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_37483767_37483887_37484000_37488175_37488244_37489409_37489489_37491311_37491505_37491601_37491715_37493826_37493955_37495669_37495786_37501972_37502049_37503501_37503616_37505617_37505665_37529340_37529475_37534953_37535095_37537680_37537822_37575119
PB_novel_00400_5	chr1	+	747	6	Antisense	novelGene_ENSMUSG00000087233.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8955	False	NA	NA	False	NA	NA	NA	37503555	37575316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_37503616_37505617_37505665_37529340_37529475_37534953_37535092_37537650_37537822_37575119
PB_novel_00400_9	chr1	+	6262	15	Antisense	novelGene_ENSMUSG00000087233.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37479190	37575316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_37483767_37483887_37484000_37488175_37488244_37489409_37489489_37491311_37491505_37491601_37491715_37493826_37493955_37495669_37495786_37501972_37502049_37503501_37503616_37505617_37505665_37529340_37529475_37534953_37535092_37537650_37537822_37575119
PB_novel_00401_0	chr1	+	3876	1	Antisense	novelGene_ENSMUSG00000026110.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4525	False	NA	NA	False	AATAAA	-18	NA	37499125	37503001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_37499100_37503000
PB_novel_00402_1	chr1	-	165	1	Intergenic	novelGene_4379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAATAAAACTTAAA	NA	False	NA	NA	False	NA	NA	NA	37523781	37523616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_37523600_37523800
PB_novel_00405_0	chr1	+	174	1	Intergenic	novelGene_4380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAGAAAATTG	NA	False	NA	NA	False	NA	NA	NA	37943808	37943982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_37943800_37944000
PB_novel_00406_0	chr1	+	177	1	Intergenic	novelGene_4381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAAACCTGAATTT	NA	False	NA	NA	False	NA	NA	NA	37974028	37974205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_37974000_37974200
PB_novel_00407_0	chr1	+	202	1	Intergenic	novelGene_4382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAGAG	8564	False	NA	NA	False	NA	NA	NA	38007339	38007541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_38007300_38007500
PB_novel_00413_0	chr1	+	184	1	Intergenic	novelGene_4383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	6568	False	NA	NA	False	NA	NA	NA	38055821	38056005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_38055800_38056000
PB_novel_00418_0	chr1	+	3161	1	Antisense	novelGene_ENSMUSG00000026082.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38096505	38099666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_38096500_38099700
PB_novel_00418_1	chr1	+	1816	2	Antisense	novelGene_ENSMUSG00000026082.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38096505	38099666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_38096860_38098204
PB_novel_00420_0	chr1	-	3648	1	NIC	ENSMUSG00000026082.12	novel	4262	23	NA	NA	5496	-835	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6101	False	NA	NA	False	NA	NA	NA	38114946	38111298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_38111300_38114900
PB_novel_00422_0	chr1	+	167	1	Intergenic	novelGene_4384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	38229860	38230027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_38229900_38230000
PB_novel_00433_0	chr1	+	291	1	Intergenic	novelGene_4385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAACTATTGG	8019	False	NA	NA	False	NA	NA	NA	39360463	39360754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_39360500_39360800
PB_novel_00438_0	chr1	+	158	1	Intergenic	novelGene_4386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAATAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	39468567	39468725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_39468600_39468700
PB_novel_00448_0	chr1	-	159	1	Intergenic	novelGene_4387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATATTAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	39787266	39787107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_39787100_39787300
PB_novel_00449_0	chr1	+	176	1	Intergenic	novelGene_4388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAAATTT	9349	False	NA	NA	False	NA	NA	NA	39861804	39861980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_39861800_39862000
PB_novel_00451_0	chr1	+	166	1	Intergenic	novelGene_4389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	4063	False	NA	NA	False	NA	NA	NA	40014117	40014283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_40014100_40014300
PB_novel_00457_0	chr1	+	171	1	Intergenic	novelGene_4390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGTAAATAAATCTCTAAA	NA	False	NA	NA	False	NA	NA	NA	42828415	42828586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_42828400_42828600
PB_novel_00459_0	chr1	-	131	1	Intergenic	novelGene_4391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7926	False	NA	NA	False	NA	NA	NA	43133937	43133806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_43133800_43133900
PB_novel_00461_0	chr1	+	175	1	Intergenic	novelGene_4392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	43160578	43160753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_43160600_43160800
PB_novel_00463_0	chr1	-	4232	1	Antisense	novelGene_ENSMUSG00000103945.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43604769	43600537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_43600500_43604800
PB_novel_00464_0	chr1	+	175	1	Intergenic	novelGene_4393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	43600866	43601041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_43600900_43601000
PB_novel_00477_0	chr1	-	2989	1	Antisense	novelGene_ENSMUSG00000041763.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	4860	False	NA	NA	False	NA	NA	NA	44015074	44012085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_44012100_44015100
PB_novel_00481_0	chr1	+	242	1	Antisense	novelGene_ENSMUSG00000026049.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44140905	44141147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_44140900_44141100
PB_novel_00487_0	chr1	-	177	1	Intergenic	novelGene_4394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44568666	44568489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_44568500_44568700
PB_novel_00490_0	chr1	+	178	1	Intergenic	novelGene_4395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	45470556	45470734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_45470600_45470700
PB_novel_00494_0	chr1	+	124	1	Intergenic	novelGene_4396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	45641474	45641598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_45641500_45641600
PB_novel_00495_0	chr1	-	176	1	Intergenic	novelGene_4397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAATACAT	NA	False	NA	NA	False	NA	NA	NA	45708323	45708147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_45708100_45708300
PB_novel_00496_0	chr1	+	124	1	Intergenic	novelGene_4398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATAAA	-12	NA	45846297	45846421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_45846300_45846400
PB_novel_00501_0	chr1	+	175	1	Intergenic	novelGene_4399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46922016	46922191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_46922000_46922200
PB_novel_00502_0	chr1	-	170	1	Intergenic	novelGene_4400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAGAAAAAAAAACTAT	NA	False	NA	NA	False	NA	NA	NA	47065402	47065232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_47065200_47065400
PB_novel_00504_0	chr1	+	167	1	Intergenic	novelGene_4401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAATCTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47525984	47526151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_47526000_47526200
PB_novel_00505_0	chr1	-	175	1	Intergenic	novelGene_4402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47813447	47813272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_47813300_47813400
PB_novel_00510_0	chr1	+	176	1	Intergenic	novelGene_4403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAGAAGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	49146174	49146350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_49146200_49146400
PB_novel_00514_0	chr1	+	221	1	Intergenic	novelGene_4404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTTTTAAAAAAAAGGA	NA	False	NA	NA	False	AATAAA	-9	NA	51560388	51560609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_51560400_51560600
PB_novel_00517_0	chr1	+	2969	1	Antisense	novelGene_ENSMUSG00000018417.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51838271	51841240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_51838300_51841200
PB_novel_00518_0	chr1	+	177	1	Intergenic	novelGene_4405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATGCCAATATAGAA	NA	False	NA	NA	False	NA	NA	NA	52055905	52056082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_52055900_52056100
PB_novel_00521_0	chr1	-	174	1	Intergenic	novelGene_4406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATCTAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	52201549	52201375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_52201400_52201500
PB_novel_00528_0	chr1	+	176	1	Intergenic	novelGene_4407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	302	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52730567	52730743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_52730600_52730700
PB_novel_00531_0	chr1	+	177	1	Intergenic	novelGene_4408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	53206451	53206628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_53206500_53206600
PB_novel_00534_0	chr1	-	3434	1	FSM	ENSMUSG00000026098.14	ENSMUST00000188890.2	1723	1	9	-1720	9	1720	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATGAAAAACCAAAAAA	6064	False	NA	NA	False	NA	NA	NA	53336165	53332731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_53332700_53336200
PB_novel_00534_1	chr1	-	3400	2	Genic_Genomic	ENSMUSG00000026098.14	novel	3054	13	NA	NA	-14	1731	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACCAAAAAACCAAAAAAAAA	6081	False	NA	NA	False	NA	NA	NA	53336148	53332720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_-_53335555_53335582
PB_novel_00538_0	chr1	+	180	1	Intergenic	novelGene_4409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACCAAACTAG	NA	False	NA	NA	False	NA	NA	NA	54080920	54081100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_54080900_54081100
PB_novel_00544_0	chr1	-	176	1	Intergenic	novelGene_4410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	419	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54926535	54926359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_54926400_54926500
PB_novel_00547_0	chr1	+	175	1	Intergenic	novelGene_4411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	54987092	54987267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_54987100_54987300
PB_novel_00551_4	chr1	+	5256	1	Antisense	novelGene_ENSMUSG00000025982.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAATTAAAAAAAAAAAA	912	False	NA	NA	False	NA	NA	NA	55035004	55040260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_55035000_55040300
PB_novel_00556_0	chr1	+	173	1	Intergenic	novelGene_4412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACCTATACAA	NA	False	NA	NA	False	NA	NA	NA	55081217	55081390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_55081200_55081400
PB_novel_00566_0	chr1	-	179	1	Intergenic	novelGene_4413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGACACTAAT	347	False	NA	NA	False	NA	NA	NA	55215205	55215026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_55215000_55215200
PB_novel_00567_0	chr1	+	172	1	Intergenic	novelGene_4414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAATGATAAAAAC	8753	False	NA	NA	False	NA	NA	NA	55245976	55246148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_55246000_55246100
PB_novel_00571_0	chr1	-	172	1	Intergenic	novelGene_4415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAACAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	55624224	55624052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_55624100_55624200
PB_novel_00573_0	chr1	+	1673	1	Intergenic	novelGene_4416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56857922	56859595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_56857900_56859600
PB_novel_00584_0	chr1	+	121	1	Intergenic	novelGene_4417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57993370	57993491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_57993400_57993500
PB_novel_00585_0	chr1	-	136	1	Intergenic	novelGene_4418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	58024185	58024049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_58024000_58024200
PB_novel_00586_2	chr1	-	4236	1	NIC	ENSMUSG00000054770.17	novel	5016	10	NA	NA	14503	-36616	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	1662	False	NA	NA	False	NA	NA	NA	58043612	58039376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_58039400_58043600
PB_novel_00595_1	chr1	+	168	1	Intergenic	novelGene_4419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATCTTAAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	58429890	58430058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_58429900_58430100
PB_novel_00603_0	chr1	+	146	1	Intergenic	novelGene_4420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	58474566	58474712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_58474600_58474700
PB_novel_00604_0	chr1	-	175	1	Intergenic	novelGene_4422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58614612	58614437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_58614400_58614600
PB_novel_00610_0	chr1	+	176	1	Intergenic	novelGene_4421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5267	False	NA	NA	False	NA	NA	NA	58510415	58510591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_58510400_58510600
PB_novel_00615_1	chr1	+	1722	1	FSM	ENSMUSG00000059647.6	ENSMUST00000081455.6	552	1	-92	-1078	-92	1078	mono-exon	FALSE	NA	NA	NA	NA	NA	254	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTAG	NA	False	NA	NA	False	AATAAA	-17	NA	58685754	58687476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_58685800_58687500
PB_novel_00618_0	chr1	-	176	1	Intergenic	novelGene_4423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAACAAAAAACAA	2157	False	NA	NA	False	NA	NA	NA	58802630	58802454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_58802500_58802600
PB_novel_00626_0	chr1	-	180	1	Intergenic	novelGene_4424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATATGAACCC	NA	False	NA	NA	False	NA	NA	NA	59271488	59271308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_59271300_59271500
PB_novel_00627_0	chr1	-	177	1	Intergenic	novelGene_4425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATAGGTAAATA	NA	False	NA	NA	False	NA	NA	NA	59286335	59286158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_59286200_59286300
PB_novel_00628_0	chr1	-	192	1	Intergenic	novelGene_4426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	AATAAA	-12	NA	59298510	59298318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_59298300_59298500
PB_novel_00633_0	chr1	+	166	1	Intergenic	novelGene_4427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	59640221	59640387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_59640200_59640400
PB_novel_00637_0	chr1	-	172	1	Intergenic	novelGene_4428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGTTGGC	NA	False	NA	NA	False	NA	NA	NA	59687454	59687282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_59687300_59687500
PB_novel_00638_0	chr1	-	174	1	Intergenic	novelGene_4429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAACTTATAGAG	7736	False	NA	NA	False	NA	NA	NA	59690026	59689852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_59689900_59690000
PB_novel_00640_0	chr1	+	176	1	Intergenic	novelGene_4430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	-6	True	NA	NA	False	NA	NA	NA	59698061	59698237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_59698100_59698200
PB_novel_00650_0	chr1	-	173	1	Antisense	novelGene_ENSMUSG00000026020.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAAAAGAAATG	8755	False	NA	NA	False	NA	NA	NA	59754591	59754418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_59754400_59754600
PB_novel_00651_0	chr1	+	177	1	Intergenic	novelGene_4431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	59776519	59776696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_59776500_59776700
PB_novel_00652_1	chr1	-	158	1	Intergenic	novelGene_4432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAATAAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	59780107	59779949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_59779900_59780100
PB_novel_00655_0	chr1	+	194	1	Intergenic	novelGene_4433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59795000	59795194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_59795000_59795200
PB_novel_00656_2	chr1	-	158	1	Intergenic	novelGene_4434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAACA	NA	False	NA	NA	False	NA	NA	NA	59955935	59955777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_59955800_59955900
PB_novel_00673_0	chr1	+	175	1	Intergenic	novelGene_4435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTACAAAAAGAAAACCTA	4640	False	NA	NA	False	NA	NA	NA	60052459	60052634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_60052500_60052600
PB_novel_00674_0	chr1	-	180	1	Intergenic	novelGene_4436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAGAAAAAAGACTA	NA	False	NA	NA	False	NA	NA	NA	60059712	60059532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_60059500_60059700
PB_novel_00677_0	chr1	+	177	1	Intergenic	novelGene_4437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60200123	60200300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_60200100_60200300
PB_novel_00679_0	chr1	-	4505	2	Antisense	novelGene_ENSMUSG00000073664.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-34	NA	60228619	60223903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_60228155_60228365
PB_novel_00680_0	chr1	-	163	1	Intergenic	novelGene_4438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAACTTTTT	NA	False	NA	NA	False	NA	NA	NA	60231154	60230991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_60231000_60231200
PB_novel_00684_0	chr1	-	176	1	Intergenic	novelGene_4439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	60356751	60356575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_60356600_60356800
PB_novel_00692_0	chr1	-	173	1	Intergenic	novelGene_4440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATT	4	True	NA	NA	False	NA	NA	NA	60498514	60498341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_60498300_60498500
PB_novel_00698_0	chr1	+	158	1	Intergenic	novelGene_4441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAGTA	NA	False	NA	NA	False	NA	NA	NA	60875947	60876105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_60875900_60876100
PB_novel_00700_0	chr1	-	159	1	Intergenic	novelGene_4442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAACAAACAAACAAA	8497	False	NA	NA	False	NA	NA	NA	60894039	60893880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_60893900_60894000
PB_novel_00707_0	chr1	-	177	1	Intergenic	novelGene_4443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62246039	62245862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_62245900_62246000
PB_novel_00708_0	chr1	+	183	1	Intergenic	novelGene_4444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATAATTGGT	NA	False	NA	NA	False	NA	NA	NA	62462628	62462811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_62462600_62462800
PB_novel_00711_0	chr1	-	3079	1	Intergenic	novelGene_4445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAACTAGGAAAAAAAAAAA	3652	False	NA	NA	False	NA	NA	NA	62794962	62791883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_62791900_62795000
PB_novel_00714_0	chr1	-	167	1	Intergenic	novelGene_4446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAAAAAAACAC	NA	False	NA	NA	False	NA	NA	NA	63051490	63051323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_63051300_63051500
PB_novel_00715_1	chr1	+	181	1	Intergenic	novelGene_4447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATACCCT	NA	False	NA	NA	False	NA	NA	NA	63085202	63085383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_63085200_63085400
PB_novel_00722_2	chr1	+	2967	1	FSM	ENSMUSG00000084799.8	ENSMUST00000186786.2	1236	1	621	-2352	-23	2352	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63153875	63156842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_+_63153900_63156800
PB_novel_00727_0	chr1	+	247	1	Antisense	novelGene_ENSMUSG00000025968.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTATTGAAACAAAAAACA	5557	False	NA	NA	False	NA	NA	NA	63184027	63184274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_63184000_63184300
PB_novel_00729_0	chr1	-	172	1	Intergenic	novelGene_4448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAACCAAAACTGGAC	NA	False	NA	NA	False	NA	NA	NA	63188464	63188292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_63188300_63188500
PB_novel_00731_0	chr1	-	172	1	Intergenic	novelGene_4449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAATGCCCAAAC	NA	False	NA	NA	False	NA	NA	NA	63219901	63219729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_63219700_63219900
PB_novel_00739_0	chr1	+	175	1	Intergenic	novelGene_4450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	26	False	NA	NA	False	NA	NA	NA	63273242	63273417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_63273200_63273400
PB_novel_00741_0	chr1	-	3806	1	Intergenic	novelGene_4451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63305134	63301328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_63301300_63305100
PB_novel_00747_0	chr1	-	166	1	Intergenic	novelGene_4452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAATCTTAGAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63702905	63702739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_63702700_63702900
PB_novel_00750_0	chr1	-	158	1	Intergenic	novelGene_4453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTTTAAAAAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	63966958	63966800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_63966800_63967000
PB_novel_00758_0	chr1	+	4907	1	NIC	ENSMUSG00000070871.11	novel	3281	11	NA	NA	103	-15622	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64730083	64734990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_64730100_64735000
PB_novel_00761_0	chr1	+	169	1	Intergenic	novelGene_4454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	64799858	64800027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_64799900_64800000
PB_novel_00762_0	chr1	+	162	1	Intergenic	novelGene_4455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAATTAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	64800458	64800620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_64800500_64800600
PB_novel_00771_0	chr1	-	174	1	Intergenic	novelGene_4456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAACAAACAAACACC	NA	False	NA	NA	False	NA	NA	NA	65143325	65143151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_65143200_65143300
PB_novel_00773_0	chr1	+	158	1	Intergenic	novelGene_4457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	65153924	65154082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_65153900_65154100
PB_novel_00775_0	chr1	-	1296	1	Antisense	novelGene_ENSMUSG00000025949.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65232149	65230853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_65230900_65232100
PB_novel_00787_0	chr1	+	3146	1	Intergenic	novelGene_4458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	66788873	66792019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_66788900_66792000
PB_novel_00797_0	chr1	-	147	1	Intergenic	novelGene_4459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATCATAAACTTT	NA	False	NA	NA	False	NA	NA	NA	67709684	67709537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_67709500_67709700
PB_novel_00804_0	chr1	+	179	1	Intergenic	novelGene_4460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAATCCCAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	70500457	70500636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_70500500_70500600
PB_novel_00809_0	chr1	-	178	1	Intergenic	novelGene_4461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAATCAAACATGAG	NA	False	NA	NA	False	NA	NA	NA	71228134	71227956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_71228000_71228100
PB_novel_00812_0	chr1	+	177	1	Intergenic	novelGene_4462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATTT	5693	False	NA	NA	False	NA	NA	NA	71621202	71621379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_71621200_71621400
PB_novel_00819_0	chr1	+	179	1	Intergenic	novelGene_4463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAAGAAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	71875638	71875817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_71875600_71875800
PB_novel_00827_0	chr1	-	175	1	Intergenic	novelGene_4464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAGGCTGAAGAA	7085	False	NA	NA	False	NA	NA	NA	72194235	72194060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_72194100_72194200
PB_novel_00832_0	chr1	+	175	1	Intergenic	novelGene_4465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATAAATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	72278485	72278660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_72278500_72278700
PB_novel_00835_0	chr1	-	176	1	Intergenic	novelGene_4466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACAATAATATTC	NA	False	NA	NA	False	NA	NA	NA	72286822	72286646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_72286600_72286800
PB_novel_00837_0	chr1	+	170	1	Intergenic	novelGene_4467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGCTTA	7451	False	NA	NA	False	NA	NA	NA	72291844	72292014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_72291800_72292000
PB_novel_00842_0	chr1	-	655	1	Intergenic	novelGene_4468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-5	NA	72417052	72416397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_72416400_72417100
PB_novel_00846_0	chr1	+	176	1	Intergenic	novelGene_4469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72743458	72743634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_72743500_72743600
PB_novel_00847_0	chr1	-	174	1	Intergenic	novelGene_4470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	72750015	72749841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_72749800_72750000
PB_novel_00862_0	chr1	-	3811	1	Intergenic	novelGene_4471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCAAAAAAAAAAAG	3063	False	NA	NA	False	NA	NA	NA	74105313	74101502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_74101500_74105300
PB_novel_00864_1	chr1	+	201	1	Intergenic	novelGene_4475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATTG	931	False	NA	NA	False	NA	NA	NA	74296930	74297131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_74296900_74297100
PB_novel_00865_0	chr1	-	177	1	Intergenic	novelGene_4472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	74213194	74213017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_74213000_74213200
PB_novel_00867_1	chr1	-	166	1	Intergenic	novelGene_4476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAACAAAACAA	5348	False	NA	NA	False	NA	NA	NA	74300266	74300100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_74300100_74300300
PB_novel_00869_0	chr1	+	176	1	Intergenic	novelGene_4473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	74225503	74225679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_74225500_74225700
PB_novel_00871_0	chr1	-	176	1	Intergenic	novelGene_4474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAGATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74269657	74269481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_74269500_74269700
PB_novel_00872_0	chr1	+	5340	1	NIC	ENSMUSG00000006304.15	novel	1439	11	NA	NA	0	5001	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAGCAAAAAA	7881	False	NA	NA	False	NA	NA	NA	74275708	74281048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_74275700_74281000
PB_novel_00877_0	chr1	+	184	1	Intergenic	novelGene_4477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAATTTTAAAAAAAGA	5039	False	NA	NA	False	NA	NA	NA	74357496	74357680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_74357500_74357700
PB_novel_00878_0	chr1	+	169	1	Intergenic	novelGene_4478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTGGAAAAAAAAAAAAAA	3273	False	NA	NA	False	NA	NA	NA	74396547	74396716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_74396500_74396700
PB_novel_00883_0	chr1	-	579	1	Antisense	novelGene_ENSMUSG00000026174.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	74568987	74568408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_74568400_74569000
PB_novel_00884_0	chr1	+	173	1	Intergenic	novelGene_4479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	74571780	74571953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_74571800_74572000
PB_novel_00887_1	chr1	-	165	1	Intergenic	novelGene_4486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	350	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATTATATGTAAATT	NA	False	NA	NA	False	NA	NA	NA	74756768	74756603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_74756600_74756800
PB_novel_00892_0	chr1	-	179	1	Intergenic	novelGene_4480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAACAAAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	74621271	74621092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_74621100_74621300
PB_novel_00897_0	chr1	-	177	1	Intergenic	novelGene_4481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAATAAAGA	NA	False	NA	NA	False	NA	NA	NA	74690586	74690409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_74690400_74690600
PB_novel_00900_0	chr1	-	178	1	Intergenic	novelGene_4482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAACAAAAAAGTTGATAA	NA	False	NA	NA	False	NA	NA	NA	74710597	74710419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_74710400_74710600
PB_novel_00902_0	chr1	+	176	1	Intergenic	novelGene_4483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	6168	False	NA	NA	False	NA	NA	NA	74722441	74722617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_74722400_74722600
PB_novel_00904_0	chr1	-	168	1	Intergenic	novelGene_4484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	74732257	74732089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_74732100_74732300
PB_novel_00905_0	chr1	+	180	1	Intergenic	novelGene_4485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAAAATATTTTTA	NA	False	NA	NA	False	NA	NA	NA	74749456	74749636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_74749500_74749600
PB_novel_00906_0	chr1	-	177	1	Intergenic	novelGene_4487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATTTT	NA	False	NA	NA	False	NA	NA	NA	74763629	74763452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_74763500_74763600
PB_novel_00908_0	chr1	-	171	1	Intergenic	novelGene_4488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATGTA	NA	False	NA	NA	False	NA	NA	NA	74858475	74858304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_74858300_74858500
PB_novel_00909_0	chr1	+	177	1	Intergenic	novelGene_4489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATATTTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	74867089	74867266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_74867100_74867300
PB_novel_00912_0	chr1	+	155	1	Intergenic	novelGene_4490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAATTAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	74997209	74997364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_74997200_74997400
PB_novel_00913_0	chr1	+	162	1	Intergenic	novelGene_4491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGCATG	NA	False	NA	NA	False	NA	NA	NA	75028085	75028247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_75028100_75028200
PB_novel_00918_0	chr1	+	187	1	Intergenic	novelGene_4492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAATAATAATAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	75086903	75087090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_75086900_75087100
PB_novel_00925_0	chr1	-	171	1	Intergenic	novelGene_4493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAGTCTTTATTAAA	12	True	NA	NA	False	NA	NA	NA	75209440	75209269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_75209300_75209400
PB_novel_00929_0	chr1	-	182	1	Intergenic	novelGene_4494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	75349084	75348902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_75348900_75349100
PB_novel_00930_0	chr1	-	176	1	Intergenic	novelGene_4495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAGAAAAGAA	7701	False	NA	NA	False	NA	NA	NA	75367315	75367139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_75367100_75367300
PB_novel_00934_0	chr1	+	159	1	Intergenic	novelGene_4496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTAAAAAACAAAAATAAAAC	NA	False	NA	NA	False	NA	NA	NA	75411850	75412009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_75411800_75412000
PB_novel_00941_0	chr1	-	178	1	Intergenic	novelGene_4497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	75606787	75606609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_75606600_75606800
PB_novel_00943_0	chr1	-	174	1	Intergenic	novelGene_4498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGACAAGG	NA	False	NA	NA	False	NA	NA	NA	75793290	75793116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_75793100_75793300
PB_novel_00946_0	chr1	-	3633	1	NIC	ENSMUSG00000026235.15	novel	6328	18	NA	NA	-1095	-1439	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77355339	77351706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_77351700_77355300
PB_novel_00947_0	chr1	+	168	1	Intergenic	novelGene_4499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	77392065	77392233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_77392100_77392200
PB_novel_00950_0	chr1	+	4017	1	Intergenic	novelGene_4500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAAAAAAACAGC	NA	False	NA	NA	False	NA	NA	NA	77414018	77418035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_77414000_77418000
PB_novel_00959_0	chr1	-	171	1	Intergenic	novelGene_4501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAACCCAAA	NA	False	NA	NA	False	NA	NA	NA	78584693	78584522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_78584500_78584700
PB_novel_00963_0	chr1	-	3619	1	Intergenic	novelGene_4502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCCAAAAAAAAAAAAAA	4970	False	NA	NA	False	AATATA	-41	NA	78653329	78649710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_78649700_78653300
PB_novel_00976_0	chr1	+	176	1	Intergenic	novelGene_4503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80239214	80239390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_80239200_80239400
PB_novel_00978_0	chr1	+	332	1	Intergenic	novelGene_4504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGTAAAATTTTTAAA	NA	False	NA	NA	False	CATAAA	-5	NA	80294571	80294903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_80294600_80294900
PB_novel_00983_0	chr1	+	2166	1	Intergenic	novelGene_4505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82304907	82307073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_82304900_82307100
PB_novel_00997_0	chr1	-	179	1	Intergenic	novelGene_4506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAACAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	82927458	82927279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_82927300_82927500
PB_novel_01007_0	chr1	+	3852	1	Antisense	novelGene_ENSMUSG00000026219.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	5514	False	NA	NA	False	NA	NA	NA	84715882	84719734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_84715900_84719700
PB_novel_01010_0	chr1	-	124	1	Intergenic	novelGene_4507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	8972	False	NA	NA	False	AATAAA	-17	NA	84736208	84736084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_84736100_84736200
PB_novel_01013_0	chr1	+	1643	1	Intergenic	novelGene_4508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATACCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-45	NA	84762040	84763683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_84762000_84763700
PB_novel_01014_0	chr1	+	176	1	Intergenic	novelGene_4509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	84796192	84796368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_84796200_84796400
PB_novel_01016_0	chr1	-	248	1	Intergenic	novelGene_4510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATTTTTACAACA	4772	False	NA	NA	False	NA	NA	NA	84820147	84819899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_84819900_84820100
PB_novel_01018_0	chr1	+	178	1	Intergenic	novelGene_4511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	3875	False	NA	NA	False	NA	NA	NA	84843787	84843965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_84843800_84844000
PB_novel_01020_1	chr1	+	171	2	Intergenic	novelGene_4512	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAAAAAAATCG	NA	False	NA	NA	False	NA	NA	NA	84857280	84857909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_84857327_84857784
PB_novel_01027_0	chr1	-	299	1	Intergenic	novelGene_4513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTTTAAAAAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	84939271	84938972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_84939000_84939300
PB_novel_01031_0	chr1	-	168	1	Intergenic	novelGene_4514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAAAAGTTTC	2576	False	NA	NA	False	NA	NA	NA	85109909	85109741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_85109700_85109900
PB_novel_01033_0	chr1	-	298	1	Intergenic	novelGene_4515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCTTTTTTAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	85188281	85187983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_85188000_85188300
PB_novel_01039_0	chr1	+	176	1	Intergenic	novelGene_4516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	2592	False	NA	NA	False	NA	NA	NA	85603670	85603846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_85603700_85603800
PB_novel_01041_0	chr1	-	176	1	Intergenic	novelGene_4517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAATAATGATTTAA	569	False	NA	NA	False	NA	NA	NA	85736005	85735829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_85735800_85736000
PB_novel_01042_0	chr1	+	3032	1	Intergenic	novelGene_4518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATACAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85750115	85753147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_85750100_85753100
PB_novel_01045_0	chr1	+	176	1	Intergenic	novelGene_4519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85977236	85977412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_85977200_85977400
PB_novel_01052_0	chr1	-	173	1	Intergenic	novelGene_4520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	86098596	86098423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_86098400_86098600
PB_novel_01056_0	chr1	+	183	1	Intergenic	novelGene_4521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86210417	86210600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_86210400_86210600
PB_novel_01057_0	chr1	+	164	1	Intergenic	novelGene_4522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86211650	86211814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_86211600_86211800
PB_novel_01059_0	chr1	+	220	1	Intergenic	novelGene_4523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCATATATGCACATTTGAA	9854	False	NA	NA	False	NA	NA	NA	86243883	86244103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_86243900_86244100
PB_novel_01064_0	chr1	+	4057	1	Antisense	novelGene_ENSMUSG00000026234.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86271682	86275739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_86271700_86275700
PB_novel_01067_0	chr1	-	129	1	Intergenic	novelGene_4524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	86308694	86308565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_86308600_86308700
PB_novel_01069_0	chr1	-	175	1	Intergenic	novelGene_4525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAACCCACAGAAATAT	7792	False	NA	NA	False	NA	NA	NA	86340224	86340049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_86340000_86340200
PB_novel_01073_0	chr1	+	335	1	Intergenic	novelGene_4526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTGTCTCAAAAAAGACAAA	NA	False	NA	NA	False	NA	NA	NA	86395574	86395909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_86395600_86395900
PB_novel_01075_0	chr1	+	176	1	Intergenic	novelGene_4527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86401939	86402115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_86401900_86402100
PB_novel_01084_0	chr1	+	202	1	Intergenic	novelGene_4528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTCAAATAAGGT	NA	False	NA	NA	False	NA	NA	NA	86578642	86578844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_86578600_86578800
PB_novel_01085_0	chr1	-	176	1	Intergenic	novelGene_4529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACTCTAC	NA	False	NA	NA	False	NA	NA	NA	86641953	86641777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_86641800_86642000
PB_novel_01088_0	chr1	-	5686	1	Intergenic	novelGene_4530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86800825	86795139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_86795100_86800800
PB_novel_01091_0	chr1	-	167	1	Intergenic	novelGene_4531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAACAAAAACATTT	NA	False	NA	NA	False	NA	NA	NA	86999199	86999032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_86999000_86999200
PB_novel_01094_3	chr1	-	179	1	Intergenic	novelGene_4532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	87058614	87058435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_87058400_87058600
PB_novel_01097_0	chr1	-	188	1	Intergenic	novelGene_4533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	7261	False	NA	NA	False	NA	NA	NA	87173703	87173515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_87173500_87173700
PB_novel_01098_0	chr1	-	172	1	Intergenic	novelGene_4534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	87186851	87186679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_87186700_87186900
PB_novel_01099_0	chr1	-	175	1	Intergenic	novelGene_4535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAATTAAATTC	NA	False	NA	NA	False	NA	NA	NA	87231095	87230920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_87230900_87231100
PB_novel_01100_0	chr1	-	175	1	Intergenic	novelGene_4536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGATTTTGCC	NA	False	NA	-17	True	NA	NA	NA	87365922	87365747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_87365700_87365900
PB_novel_01107_0	chr1	-	597	1	Antisense	novelGene_ENSMUSG00000048000.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87371332	87370735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_87370700_87371300
PB_novel_01111_0	chr1	+	178	1	Intergenic	novelGene_4537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATTAAAGAAGT	6682	False	NA	NA	False	NA	NA	NA	87601272	87601450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_87601300_87601400
PB_novel_01115_2	chr1	-	176	1	Intergenic	novelGene_4538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	272	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87770352	87770176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_87770200_87770400
PB_novel_01116_0	chr1	+	4627	1	NIC	ENSMUSG00000026289.16	novel	749	6	NA	NA	1	-7300	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACCAAAAGAAAAAAAGA	7289	False	NA	NA	False	NA	NA	NA	87683778	87688405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_87683800_87688400
PB_novel_01120_0	chr1	-	180	1	Intergenic	novelGene_4539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATTATCATCATC	NA	False	NA	NA	False	NA	NA	NA	87829902	87829722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_87829700_87829900
PB_novel_01136_0	chr1	+	172	1	Intergenic	novelGene_4540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAAAAAACCTCA	NA	False	NA	NA	False	NA	NA	NA	88524338	88524510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_88524300_88524500
PB_novel_01139_0	chr1	-	171	1	Intergenic	novelGene_4541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAGGAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	88603326	88603155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_88603200_88603300
PB_novel_01150_14	chr1	-	1768	13	Antisense	novelGene_ENSMUSG00000103252.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	89762310	89383028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_89383313_89532317_89532378_89537216_89537311_89555485_89555566_89558106_89558251_89561880_89562016_89591379_89591509_89592753_89592912_89598900_89598992_89653680_89653784_89671445_89671617_89716882_89717045_89762153
PB_novel_01150_4	chr1	-	1927	14	Antisense	novelGene_ENSMUSG00000103252.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	89762310	89383028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_89383313_89532317_89532378_89537216_89537311_89555485_89555566_89558106_89558251_89561880_89562016_89591379_89591509_89592753_89592912_89598900_89598992_89653680_89653784_89671445_89671617_89694025_89694185_89716882_89717045_89762153
PB_novel_01151_0	chr1	-	1419	1	Antisense	novelGene_ENSMUSG00000055013.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	89384447	89383028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_89383000_89384400
PB_novel_01154_0	chr1	+	158	1	Intergenic	novelGene_4542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	89681876	89682034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_89681900_89682000
PB_novel_01160_0	chr1	-	172	1	Intergenic	novelGene_4543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89874717	89874545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_89874500_89874700
PB_novel_01170_0	chr1	+	5390	1	NIC	ENSMUSG00000034343.15	novel	639	5	NA	NA	35	-9157	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	691	False	NA	NA	False	NA	NA	NA	91178412	91183802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_91178400_91183800
PB_novel_01172_0	chr1	+	160	1	Intergenic	novelGene_4544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	284	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCTTTAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	91231407	91231567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_91231400_91231600
PB_novel_01174_0	chr1	+	195	1	Intergenic	novelGene_4545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGGAAAAAAAAAAAAAAAA	1166	False	NA	NA	False	NA	NA	NA	91321391	91321586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_91321400_91321600
PB_novel_01179_0	chr1	-	1475	1	Antisense	novelGene_ENSMUSG00000034292.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAACAA	2065	False	NA	NA	False	NA	NA	NA	91457230	91455755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_91455800_91457200
PB_novel_01181_0	chr1	-	161	1	Intergenic	novelGene_4546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	91475253	91475092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_91475100_91475300
PB_novel_01182_0	chr1	+	177	1	Intergenic	novelGene_4547	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATTCCATTCAAA	NA	False	NA	NA	False	NA	NA	NA	91481491	91481668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_91481500_91481700
PB_novel_01195_0	chr1	-	170	1	Intergenic	novelGene_4548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAACATTAAGACA	NA	False	NA	NA	False	NA	NA	NA	93218028	93217858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_93217900_93218000
PB_novel_01198_0	chr1	-	1929	1	Antisense	novelGene_ENSMUSG00000106302.3_AS_novelGene_ENSMUSG00000026275.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93274665	93272736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_93272700_93274700
PB_novel_01203_0	chr1	+	176	1	Intergenic	novelGene_4549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	93414272	93414448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_93414300_93414400
PB_novel_01206_0	chr1	-	175	1	Intergenic	novelGene_4550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93451912	93451737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_93451700_93451900
PB_novel_01213_1	chr1	+	176	1	Intergenic	novelGene_4551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATAAAATCAACAG	NA	False	NA	NA	False	NA	NA	NA	93567377	93567553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_93567400_93567600
PB_novel_01216_0	chr1	-	153	1	Intergenic	novelGene_4552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAAAATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	93588726	93588573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_93588600_93588700
PB_novel_01222_0	chr1	+	1639	1	Intergenic	novelGene_4553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93661415	93663054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_93661400_93663100
PB_novel_01223_0	chr1	+	177	1	Intergenic	novelGene_4554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGCATTTGTA	NA	False	NA	NA	False	NA	NA	NA	93667176	93667353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_93667200_93667400
PB_novel_01230_0	chr1	+	216	1	Antisense	novelGene_ENSMUSG00000026281.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGACAATAAAAAAAAAAAAA	7210	False	NA	NA	False	NA	NA	NA	93726865	93727081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_93726900_93727100
PB_novel_01234_0	chr1	-	1890	1	Antisense	novelGene_ENSMUSG00000073609.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAGGTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93760788	93758898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_93758900_93760800
PB_novel_01236_0	chr1	+	174	1	Intergenic	novelGene_4555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93791972	93792146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_93792000_93792100
PB_novel_01237_0	chr1	-	185	1	Intergenic	novelGene_4556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	93814018	93813833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_93813800_93814000
PB_novel_01238_0	chr1	-	228	1	Intergenic	novelGene_4557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGTTGTTAAAAAAAAAAA	1576	False	NA	NA	False	NA	NA	NA	93823900	93823672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_93823700_93823900
PB_novel_01242_0	chr1	+	171	1	Intergenic	novelGene_4558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAAATATA	1086	False	NA	NA	False	NA	NA	NA	94017996	94018167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_94018000_94018200
PB_novel_01243_0	chr1	+	175	1	Intergenic	novelGene_4559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGAATTT	NA	False	NA	NA	False	NA	NA	NA	94105370	94105545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_94105400_94105500
PB_novel_01254_0	chr1	+	3797	1	Antisense	novelGene_ENSMUSG00000040648.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97645211	97649008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_97645200_97649000
PB_novel_01259_0	chr1	+	172	1	Intergenic	novelGene_4560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	98411715	98411887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_98411700_98411900
PB_novel_01261_0	chr1	+	166	1	Intergenic	novelGene_4561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100311832	100311998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_100311800_100312000
PB_novel_01262_0	chr1	+	197	1	Intergenic	novelGene_4562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTAAAAAAAGA	8160	False	NA	NA	False	NA	NA	NA	101616554	101616751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_101616600_101616800
PB_novel_01263_0	chr1	+	176	1	Intergenic	novelGene_4563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAATATACATT	NA	False	NA	NA	False	NA	NA	NA	102020975	102021151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_102021000_102021200
PB_novel_01266_0	chr1	+	251	1	Intergenic	novelGene_4564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-16	NA	103095245	103095496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_103095200_103095500
PB_novel_01270_0	chr1	+	175	1	Intergenic	novelGene_4565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACAGTGAATTT	NA	False	NA	NA	False	NA	NA	NA	104132655	104132830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_104132700_104132800
PB_novel_01277_0	chr1	-	171	1	Intergenic	novelGene_4566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	105548823	105548652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_105548700_105548800
PB_novel_01282_0	chr1	-	2849	1	Antisense	novelGene_ENSMUSG00000026319.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105631983	105629134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_105629100_105632000
PB_novel_01289_0	chr1	-	2880	1	Antisense	novelGene_ENSMUSG00000038866.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-37	NA	105956990	105954110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_105954100_105957000
PB_novel_01304_0	chr1	+	178	1	Intergenic	novelGene_4567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACAATATAGAGC	NA	False	NA	NA	False	NA	NA	NA	107488429	107488607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_107488400_107488600
PB_novel_01305_0	chr1	-	178	1	Intergenic	novelGene_4568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108036956	108036778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_108036800_108037000
PB_novel_01307_0	chr1	+	177	1	Intergenic	novelGene_4569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATATATATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108705929	108706106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_108705900_108706100
PB_novel_01308_0	chr1	-	160	1	Intergenic	novelGene_4570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	109436497	109436337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_109436300_109436500
PB_novel_01310_0	chr1	+	161	1	Intergenic	novelGene_4571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	109935037	109935198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_109935000_109935200
PB_novel_01312_0	chr1	-	177	1	Intergenic	novelGene_4572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCTTCACA	NA	False	NA	NA	False	NA	NA	NA	111220438	111220261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_111220300_111220400
PB_novel_01313_0	chr1	+	168	1	Intergenic	novelGene_4573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111478219	111478387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_111478200_111478400
PB_novel_01314_0	chr1	+	177	1	Intergenic	novelGene_4574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	177	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	111824484	111824661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_111824500_111824700
PB_novel_01320_0	chr1	+	165	1	Intergenic	novelGene_4575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAGAAATATTA	NA	False	NA	NA	False	NA	NA	NA	113451361	113451526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_113451400_113451500
PB_novel_01322_0	chr1	+	4235	1	Intergenic	novelGene_4576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	113886501	113890736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_113886500_113890700
PB_novel_01324_0	chr1	-	164	1	Intergenic	novelGene_4577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115297281	115297117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_115297100_115297300
PB_novel_01335_0	chr1	-	4402	1	Antisense	novelGene_ENSMUSG00000026377.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CGAAAAACCAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	118258788	118254386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_118254400_118258800
PB_novel_01338_0	chr1	+	172	1	Intergenic	novelGene_4578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAGAAAGAAAGG	NA	False	NA	NA	False	NA	NA	NA	118278068	118278240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_118278100_118278200
PB_novel_01340_0	chr1	-	156	1	Intergenic	novelGene_4579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTAAAAACCTAAAAAAAG	3643	False	NA	NA	False	NA	NA	NA	118295948	118295792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_118295800_118295900
PB_novel_01352_0	chr1	+	173	1	Intergenic	novelGene_4580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACTGAACCAG	NA	False	NA	NA	False	NA	NA	NA	118560331	118560504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_118560300_118560500
PB_novel_01354_0	chr1	-	2853	1	Intergenic	novelGene_4581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	118603250	118600397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_118600400_118603200
PB_novel_01356_0	chr1	-	175	1	Intergenic	novelGene_4582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAATGAA	NA	False	NA	NA	False	NA	NA	NA	118653124	118652949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_118652900_118653100
PB_novel_01368_0	chr1	+	175	1	Intergenic	novelGene_4583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	119613594	119613769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_119613600_119613800
PB_novel_01372_0	chr1	+	142	1	Intergenic	novelGene_4584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	119699522	119699664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_119699500_119699700
PB_novel_01374_0	chr1	+	168	1	Intergenic	novelGene_4585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATCTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119738261	119738429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_119738300_119738400
PB_novel_01377_0	chr1	-	174	1	Intergenic	novelGene_4586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	9175	False	NA	NA	False	NA	NA	NA	119988055	119987881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_119987900_119988100
PB_novel_01379_0	chr1	-	176	1	Intergenic	novelGene_4587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	254	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120021785	120021609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_120021600_120021800
PB_novel_01382_0	chr1	+	175	1	Intergenic	novelGene_4588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	120207240	120207415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_120207200_120207400
PB_novel_01388_0	chr1	+	154	1	Intergenic	novelGene_4589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAATAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	120598729	120598883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_120598700_120598900
PB_novel_01389_0	chr1	-	2487	1	NIC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	-5	-5504	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121255480	121252993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_121253000_121255500
PB_novel_01390_0	chr1	-	4317	1	Antisense	novelGene_ENSMUSG00000026339.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121370990	121366673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_121366700_121371000
PB_novel_01392_0	chr1	+	169	1	Intergenic	novelGene_4590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGCTTCT	NA	False	NA	NA	False	NA	NA	NA	121481022	121481191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_121481000_121481200
PB_novel_01395_0	chr1	-	166	1	Intergenic	novelGene_4591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAATAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123099808	123099642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_123099600_123099800
PB_novel_01396_0	chr1	+	173	1	Intergenic	novelGene_4592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	123477085	123477258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_123477100_123477300
PB_novel_01406_0	chr1	+	177	1	Intergenic	novelGene_4593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAAAGTTAAAG	NA	False	NA	NA	False	NA	NA	NA	127651587	127651764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_127651600_127651800
PB_novel_01407_0	chr1	-	1942	1	Antisense	novelGene_ENSMUSG00000026349.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	1843	False	NA	NA	False	NA	NA	NA	127731111	127729169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_127729200_127731100
PB_novel_01409_3	chr1	-	177	1	Intergenic	novelGene_4594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	272	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	127773910	127773733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_127773700_127773900
PB_novel_01425_0	chr1	+	177	1	Intergenic	novelGene_4595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAGAAAA	5263	False	NA	NA	False	NA	NA	NA	128049746	128049923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_128049700_128049900
PB_novel_01430_0	chr1	-	176	1	Antisense	novelGene_ENSMUSG00000056211.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128136799	128136623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_128136600_128136800
PB_novel_01431_0	chr1	+	130	1	Intergenic	novelGene_4596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTACATATAATAATAAATA	1344	False	NA	NA	False	NA	NA	NA	128153164	128153294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_128153200_128153300
PB_novel_01438_0	chr1	-	172	1	Intergenic	novelGene_4597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128190378	128190206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_128190200_128190400
PB_novel_01439_0	chr1	-	178	1	Intergenic	novelGene_4598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAACAACAACAACAACAAA	NA	False	NA	NA	False	NA	NA	NA	128192916	128192738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_128192700_128192900
PB_novel_01440_0	chr1	+	175	1	Intergenic	novelGene_4599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAACTCAAAGC	2446	False	NA	NA	False	NA	NA	NA	128200120	128200295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_128200100_128200300
PB_novel_01452_0	chr1	-	165	1	Intergenic	novelGene_4600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAAGTTA	NA	False	NA	NA	False	NA	NA	NA	130116009	130115844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_130115800_130116000
PB_novel_01454_0	chr1	+	177	1	Intergenic	novelGene_4601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGAAAAAATCCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	130377445	130377622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_130377400_130377600
PB_novel_01458_0	chr1	+	186	1	Intergenic	novelGene_4602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAGAATTGGAGAAG	NA	False	NA	NA	False	NA	NA	NA	130897575	130897761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_130897600_130897800
PB_novel_01459_0	chr1	-	176	1	Intergenic	novelGene_4603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	131044162	131043986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_131044000_131044200
PB_novel_01463_0	chr1	-	176	1	Intergenic	novelGene_4604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAATTAAAAGGCAC	9141	False	NA	NA	False	NA	NA	NA	131130176	131130000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_131130000_131130200
PB_novel_01464_0	chr1	+	173	1	Intergenic	novelGene_4605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCTTTAAAGAAAGAAATAA	2460	False	NA	NA	False	NA	NA	NA	131152193	131152366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_131152200_131152400
PB_novel_01470_0	chr1	-	175	1	Intergenic	novelGene_4606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	131367420	131367245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_131367200_131367400
PB_novel_01473_0	chr1	+	1406	1	Intergenic	novelGene_4607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	131447041	131448447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_131447000_131448400
PB_novel_01475_0	chr1	-	176	1	Intergenic	novelGene_4608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	3075	False	NA	NA	False	NA	NA	NA	131492327	131492151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_131492200_131492300
PB_novel_01476_0	chr1	+	166	1	Intergenic	novelGene_4609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	131496374	131496540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_131496400_131496500
PB_novel_01482_1	chr1	+	143	2	Intergenic	novelGene_4610	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	518	junction_1	0	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAAAACTTCA	NA	False	NA	NA	False	NA	NA	NA	131779599	131779901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_131779648_131779806
PB_novel_01483_0	chr1	+	2407	1	NIC	ENSMUSG00000026433.14	novel	1202	5	NA	NA	39	-1294	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	131795016	131797423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_131795000_131797400
PB_novel_01484_0	chr1	-	173	1	Intergenic	novelGene_4611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	131799269	131799096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_131799100_131799300
PB_novel_01490_0	chr1	-	175	1	Intergenic	novelGene_4612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATGACCATCTC	NA	False	NA	NA	False	NA	NA	NA	131830364	131830189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_131830200_131830400
PB_novel_01494_0	chr1	-	205	1	Intergenic	novelGene_4613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	131840990	131840785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_131840800_131841000
PB_novel_01495_0	chr1	+	293	1	Intergenic	novelGene_4614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAAAGAAATCTCC	2775	False	NA	NA	False	NA	NA	NA	131841577	131841870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_131841600_131841900
PB_novel_01500_0	chr1	+	162	1	Intergenic	novelGene_4615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTTTAAAAAACAAACAAG	NA	False	NA	NA	False	NA	NA	NA	131878123	131878285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_131878100_131878300
PB_novel_01505_0	chr1	-	176	1	Intergenic	novelGene_4616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATTAAGATGGA	NA	False	NA	NA	False	NA	NA	NA	131922523	131922347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_131922300_131922500
PB_novel_01506_0	chr1	+	174	1	Intergenic	novelGene_4617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATTTAAAAGAAAAA	8355	False	NA	NA	False	NA	NA	NA	131927370	131927544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_131927400_131927500
PB_novel_01508_0	chr1	-	4601	2	Antisense	novelGene_ENSMUSG00000026436.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	131942353	131937545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_131938038_131938244
PB_novel_01511_0	chr1	-	2060	1	Antisense	novelGene_ENSMUSG00000026436.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	131946161	131944101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_131944100_131946200
PB_novel_01516_0	chr1	-	170	1	Intergenic	novelGene_4618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	132020666	132020496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_132020500_132020700
PB_novel_01517_0	chr1	-	173	1	Intergenic	novelGene_4619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGCACTG	NA	False	NA	NA	False	NA	NA	NA	132022134	132021961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_132022000_132022100
PB_novel_01521_0	chr1	-	175	1	Intergenic	novelGene_4620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGAGAGAGAATT	NA	False	NA	NA	False	NA	NA	NA	132170074	132169899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_132169900_132170100
PB_novel_01522_0	chr1	+	163	1	Intergenic	novelGene_4621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	132175278	132175441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_132175300_132175400
PB_novel_01534_0	chr1	+	167	1	Intergenic	novelGene_4622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTTTAAAAATGTAAAAA	NA	False	NA	NA	False	NA	NA	NA	132397591	132397758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_132397600_132397800
PB_novel_01536_0	chr1	-	4156	1	FSM	ENSMUSG00000097760.3	ENSMUST00000188203.2	1006	1	50	-3200	31	3200	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCAGTAGCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132404752	132400596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr1_-_132400600_132404800
PB_novel_01537_0	chr1	+	176	1	Intergenic	novelGene_4623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATAATAATACAT	1952	False	NA	NA	False	NA	NA	NA	132419534	132419710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_132419500_132419700
PB_novel_01540_0	chr1	-	177	1	Intergenic	novelGene_4624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAATAAA	7638	False	NA	NA	False	NA	NA	NA	132616843	132616666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_132616700_132616800
PB_novel_01542_0	chr1	-	177	1	Intergenic	novelGene_4625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132752721	132752544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_132752500_132752700
PB_novel_01545_3	chr1	+	177	1	Intergenic	novelGene_4626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132893811	132893988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_132893800_132894000
PB_novel_01556_1	chr1	-	178	1	Intergenic	novelGene_4627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	851	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	132964018	132963840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_132963800_132964000
PB_novel_01559_0	chr1	-	3296	1	Antisense	novelGene_ENSMUSG00000026447.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATATCAAAAAAAAAACAAAA	5457	False	NA	NA	False	AGTAAA	-17	NA	133025126	133021830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_133021800_133025100
PB_novel_01561_0	chr1	+	163	1	Intergenic	novelGene_4628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGCAAATATTTTAAAATA	NA	False	NA	NA	False	NA	NA	NA	133037234	133037397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_133037200_133037400
PB_novel_01564_0	chr1	-	186	1	Intergenic	novelGene_4629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GATTTAAAAAAAAAGAATTT	8179	False	NA	NA	False	NA	NA	NA	133063584	133063398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_133063400_133063600
PB_novel_01568_0	chr1	-	159	1	Intergenic	novelGene_4630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAATATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133077661	133077502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_133077500_133077700
PB_novel_01573_1	chr1	+	179	1	Intergenic	novelGene_4632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAACAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	133266896	133267075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_133266900_133267100
PB_novel_01580_0	chr1	+	174	1	Intergenic	novelGene_4631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	5329	False	NA	NA	False	NA	NA	NA	133261463	133261637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_133261500_133261600
PB_novel_01585_0	chr1	-	178	1	Intergenic	novelGene_4636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	2145	False	NA	NA	False	NA	NA	NA	133659248	133659070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_133659100_133659200
PB_novel_01586_0	chr1	+	178	1	Intergenic	novelGene_4633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAACATTTAACAA	NA	False	NA	NA	False	NA	NA	NA	133479591	133479769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_133479600_133479800
PB_novel_01588_0	chr1	-	172	1	Intergenic	novelGene_4634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	133496718	133496546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_133496500_133496700
PB_novel_01592_0	chr1	-	3127	1	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	6815	2980	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133582204	133579077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_133579100_133582200
PB_novel_01597_0	chr1	+	388	1	Intergenic	novelGene_4635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	133625078	133625466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_133625100_133625500
PB_novel_01602_0	chr1	-	183	1	Intergenic	novelGene_4637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAGAAAATA	NA	False	NA	NA	False	NA	NA	NA	133739450	133739267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_133739300_133739400
PB_novel_01611_0	chr1	-	5162	1	NIC	ENSMUSG00000042305.13	novel	3149	8	NA	NA	3	-1069	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	134289676	134284514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_134284500_134289700
PB_novel_01612_2	chr1	+	168	1	Intergenic	novelGene_4638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2397	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAATTTAAAAAAAAAAAAA	8105	False	NA	NA	False	NA	NA	NA	134284710	134284878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_134284700_134284900
PB_novel_01619_0	chr1	-	168	1	Intergenic	novelGene_4639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGTATTGT	4837	False	NA	NA	False	NA	NA	NA	134357128	134356960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_134357000_134357100
PB_novel_01621_1	chr1	-	177	1	Intergenic	novelGene_4640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	134376431	134376254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_134376300_134376400
PB_novel_01626_0	chr1	-	191	1	Intergenic	novelGene_4641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTAATGTTATAT	1528	False	NA	NA	False	NA	NA	NA	134404104	134403913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_134403900_134404100
PB_novel_01629_2	chr1	-	1588	1	Intergenic	novelGene_4642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134429160	134427572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_134427600_134429200
PB_novel_01629_6	chr1	-	1550	2	Antisense	novelGene_ENSMUSG00000042229.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134429160	134427572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_134428607_134428644
PB_novel_01636_0	chr1	-	156	1	Intergenic	novelGene_4643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATAAATCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	134495145	134494989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_134495000_134495100
PB_novel_01639_0	chr1	+	2028	1	NIC	ENSMUSG00000042207.18	novel	8714	27	NA	NA	14335	-2452	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGGTACAAA	NA	False	NA	NA	False	AGTAAA	-6	NA	134530049	134532077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_+_134530000_134532100
PB_novel_01641_1	chr1	-	180	1	Intergenic	novelGene_4644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAATAAAAAAAG	4788	False	NA	NA	False	NA	NA	NA	134544887	134544707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_134544700_134544900
PB_novel_01642_0	chr1	-	5137	1	Antisense	novelGene_ENSMUSG00000042207.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGGAAAAAAAAAAAAAGGCA	8590	False	NA	NA	False	AATAAA	-30	NA	134541085	134535948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_134535900_134541100
PB_novel_01651_0	chr1	-	169	1	Intergenic	novelGene_4645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	135039483	135039314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_135039300_135039500
PB_novel_01652_0	chr1	+	167	1	Intergenic	novelGene_4646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	135043537	135043704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_135043500_135043700
PB_novel_01655_2	chr1	-	169	1	Intergenic	novelGene_4648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGTTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	135116520	135116351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_135116400_135116500
PB_novel_01657_0	chr1	+	175	1	Intergenic	novelGene_4647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGGTTAAAAACA	NA	False	NA	NA	False	NA	NA	NA	135103656	135103831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_135103700_135103800
PB_novel_01660_0	chr1	-	176	1	Intergenic	novelGene_4649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	135139619	135139443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_135139400_135139600
PB_novel_01662_0	chr1	+	178	1	Intergenic	novelGene_4650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1179	False	NA	NA	False	NA	NA	NA	135156750	135156928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_135156800_135156900
PB_novel_01663_1	chr1	+	158	1	Intergenic	novelGene_4651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	135202772	135202930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_135202800_135202900
PB_novel_01669_0	chr1	-	176	1	Intergenic	novelGene_4652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGTTTAAATAAAT	2851	False	NA	NA	False	NA	NA	NA	135281229	135281053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_135281100_135281200
PB_novel_01674_1	chr1	-	169	1	Intergenic	novelGene_4653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAACACACAAAA	NA	False	NA	NA	False	NA	NA	NA	135322993	135322824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_135322800_135323000
PB_novel_01682_0	chr1	+	179	1	Intergenic	novelGene_4654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATCAAGCGTCG	NA	False	NA	NA	False	NA	NA	NA	135397106	135397285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_135397100_135397300
PB_novel_01688_0	chr1	-	173	1	Intergenic	novelGene_4655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	135454415	135454242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_135454200_135454400
PB_novel_01692_0	chr1	-	131	1	Intergenic	novelGene_4656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACCAAAAAGGAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	135566167	135566036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_135566000_135566200
PB_novel_01698_0	chr1	-	179	1	Intergenic	novelGene_4657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAAGAAA	5758	False	NA	NA	False	NA	NA	NA	135628287	135628108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_135628100_135628300
PB_novel_01699_0	chr1	+	174	1	Intergenic	novelGene_4658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAAGCGTATGC	NA	False	NA	NA	False	NA	NA	NA	135631042	135631216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_135631000_135631200
PB_novel_01702_0	chr1	-	271	1	Intergenic	novelGene_4659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGTCTCGAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	135711702	135711431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_135711400_135711700
PB_novel_01713_0	chr1	+	179	1	Intergenic	novelGene_4660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGAAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	136376021	136376200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_136376000_136376200
PB_novel_01719_0	chr1	-	4476	1	Antisense	novelGene_ENSMUSG00000041498.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	136433481	136429005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_136429000_136433500
PB_novel_01722_0	chr1	+	175	1	Intergenic	novelGene_4662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	136486245	136486420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_136486200_136486400
PB_novel_01724_0	chr1	-	176	1	Intergenic	novelGene_4666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1566	False	NA	NA	False	NA	NA	NA	136683674	136683498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_136683500_136683700
PB_novel_01725_0	chr1	-	162	1	Intergenic	novelGene_4663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	136500074	136499912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_136499900_136500100
PB_novel_01727_0	chr1	+	164	1	Intergenic	novelGene_4664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTAAAAAAAATAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	136512619	136512783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_136512600_136512800
PB_novel_01737_0	chr1	+	177	1	Intergenic	novelGene_4665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	136617183	136617360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_136617200_136617400
PB_novel_01749_0	chr1	+	6160	1	Intergenic	novelGene_4667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGGAAAAAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	136831126	136837286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_136831100_136837300
PB_novel_01753_0	chr1	+	174	1	Intergenic	novelGene_4668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	136920433	136920607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_136920400_136920600
PB_novel_01754_0	chr1	-	156	1	Intergenic	novelGene_4669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	8668	False	NA	NA	False	NA	NA	NA	136940927	136940771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_136940800_136940900
PB_novel_01757_0	chr1	-	150	1	Intergenic	novelGene_4670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATAAATAAATAAATATTTT	NA	False	NA	NA	False	NA	NA	NA	137053927	137053777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_137053800_137053900
PB_novel_01759_0	chr1	-	157	1	Intergenic	novelGene_4671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATAAAATAAAATAAATTT	NA	False	NA	NA	False	NA	NA	NA	137262761	137262604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_137262600_137262800
PB_novel_01761_0	chr1	+	2415	1	Intergenic	novelGene_4672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	138534626	138537041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_138534600_138537000
PB_novel_01764_0	chr1	-	177	1	Intergenic	novelGene_4673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	138778008	138777831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_138777800_138778000
PB_novel_01771_0	chr1	-	177	1	Intergenic	novelGene_4674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATAAAATGTTCA	NA	False	NA	NA	False	NA	NA	NA	139271796	139271619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_139271600_139271800
PB_novel_01772_0	chr1	+	169	1	Intergenic	novelGene_4675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	139338844	139339013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_139338800_139339000
PB_novel_01776_0	chr1	-	176	1	Intergenic	novelGene_4676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAGAGAGAGATAGAT	8281	False	NA	0	True	NA	NA	NA	139486409	139486233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_139486200_139486400
PB_novel_01779_0	chr1	+	2357	1	Intergenic	novelGene_4677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGTCTCTAAATACCAAAA	NA	False	NA	NA	False	NA	NA	NA	140189771	140192128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_140189800_140192100
PB_novel_01788_0	chr1	+	137	1	Intergenic	novelGene_4678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTCTTGAAAAATCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	143534305	143534442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_143534300_143534400
PB_novel_01789_0	chr1	+	188	1	Intergenic	novelGene_4679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	143555806	143555994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_143555800_143556000
PB_novel_01792_0	chr1	-	2184	1	Intergenic	novelGene_4680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-10	NA	143681581	143679397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_143679400_143681600
PB_novel_01795_0	chr1	-	176	1	Intergenic	novelGene_4681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	145752100	145751924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_145751900_145752100
PB_novel_01800_0	chr1	+	169	1	Intergenic	novelGene_4682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	148344378	148344547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_148344400_148344500
PB_novel_01802_0	chr1	+	173	1	Intergenic	novelGene_4683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGGAGTTAAG	NA	False	NA	NA	False	NA	NA	NA	149164922	149165095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_149164900_149165100
PB_novel_01810_0	chr1	+	176	1	Intergenic	novelGene_4685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAATCAAACAATGT	NA	False	NA	NA	False	NA	NA	NA	150812170	150812346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_150812200_150812300
PB_novel_01820_1	chr1	-	174	1	Intergenic	novelGene_4686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151271730	151271556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_151271600_151271700
PB_novel_01829_0	chr1	-	978	1	Genic_Genomic	ENSMUSG00000026484.14	novel	NA	NA	NA	NA	-30	-23107	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151376736	151375758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr1_-_151375800_151376700
PB_novel_01832_0	chr1	+	181	1	Intergenic	novelGene_4687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAACTTCAAG	NA	False	NA	NA	False	NA	NA	NA	151415353	151415534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_151415400_151415500
PB_novel_01833_0	chr1	-	158	1	Intergenic	novelGene_4688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTTTTTTAAAAAAGGAAAAA	NA	False	NA	NA	False	AATAAA	-10	NA	151431408	151431250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_151431200_151431400
PB_novel_01869_0	chr1	+	175	1	Antisense	novelGene_ENSMUSG00000099969.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152965079	152965254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_152965100_152965300
PB_novel_01873_0	chr1	-	168	1	Intergenic	novelGene_4689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATATTTTTAA	NA	False	NA	NA	False	NA	NA	NA	153025916	153025748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_153025700_153025900
PB_novel_01881_3	chr1	+	175	1	Intergenic	novelGene_4690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAGCAAATGAAGAA	NA	False	NA	NA	False	NA	NA	NA	153287689	153287864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_153287700_153287900
PB_novel_01881_5	chr1	+	175	1	Intergenic	novelGene_4691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAGCAAATGAAG	NA	False	NA	NA	False	NA	NA	NA	153292361	153292536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_153292400_153292500
PB_novel_01881_6	chr1	+	176	2	Antisense	novelGene_ENSMUSG00000073538.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	271	junction_1	0	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAGCAAATGAAG	NA	False	NA	NA	False	NA	NA	NA	153287688	153292536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_153287738_153292409
PB_novel_01884_1	chr1	+	176	1	Intergenic	novelGene_4692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAACACTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	153326080	153326256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_153326100_153326300
PB_novel_01885_0	chr1	+	154	1	Intergenic	novelGene_4693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAAAAAAAAGG	6397	False	NA	NA	False	NA	NA	NA	153357744	153357898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_153357700_153357900
PB_novel_01886_0	chr1	-	185	1	Intergenic	novelGene_4694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	153365465	153365280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_153365300_153365500
PB_novel_01888_0	chr1	+	186	1	Intergenic	novelGene_4695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTATTTGTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	153372938	153373124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_153372900_153373100
PB_novel_01894_0	chr1	-	159	1	Intergenic	novelGene_4696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAATAAATAAATCTAAAAA	9688	False	NA	NA	False	NA	NA	NA	153396843	153396684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_153396700_153396800
PB_novel_01897_0	chr1	-	181	1	Intergenic	novelGene_4697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACATTTAAAA	6095	False	NA	NA	False	NA	NA	NA	153539295	153539114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_153539100_153539300
PB_novel_01899_0	chr1	+	197	1	Intergenic	novelGene_4698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	866	False	NA	NA	False	NA	NA	NA	153741403	153741600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_153741400_153741600
PB_novel_01900_0	chr1	-	174	1	Antisense	novelGene_ENSMUSG00000043282.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAGAAATTAGGT	NA	False	NA	NA	False	NA	NA	NA	153752272	153752098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_153752100_153752300
PB_novel_01904_0	chr1	+	174	1	Intergenic	novelGene_4699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	153971690	153971864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_153971700_153971900
PB_novel_01905_0	chr1	-	175	1	Intergenic	novelGene_4700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAATAAATAAATAAAGA	NA	False	NA	NA	False	NA	NA	NA	154030848	154030673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_154030700_154030800
PB_novel_01912_0	chr1	-	175	1	Intergenic	novelGene_4701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAATAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	155163747	155163572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_155163600_155163700
PB_novel_01917_0	chr1	-	179	1	Intergenic	novelGene_4702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	155382194	155382015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_155382000_155382200
PB_novel_01920_0	chr1	-	194	1	Intergenic	novelGene_4703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAACAAT	NA	False	NA	NA	False	NA	NA	NA	155445971	155445777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_155445800_155446000
PB_novel_01922_0	chr1	-	186	1	Intergenic	novelGene_4704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	155552258	155552072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_155552100_155552300
PB_novel_01928_0	chr1	-	176	1	Intergenic	novelGene_4705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	155897433	155897257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_155897300_155897400
PB_novel_01930_0	chr1	+	1338	1	Antisense	novelGene_ENSMUSG00000026466.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-37	NA	155909747	155911085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_155909700_155911100
PB_novel_01935_0	chr1	-	207	1	Intergenic	novelGene_4706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AAGAAA	-9	NA	156015665	156015458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_156015500_156015700
PB_novel_01937_0	chr1	+	178	1	Intergenic	novelGene_4707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATAACAACCAA	NA	False	NA	NA	False	NA	NA	NA	156110615	156110793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_156110600_156110800
PB_novel_01939_0	chr1	+	185	1	Intergenic	novelGene_4708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCTTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156163841	156164026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_156163800_156164000
PB_novel_01941_0	chr1	+	177	1	Intergenic	novelGene_4709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAATGCTATTA	9024	False	NA	NA	False	NA	NA	NA	156222173	156222350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_156222200_156222400
PB_novel_01942_0	chr1	+	173	1	Intergenic	novelGene_4710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAGAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	156232117	156232290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_156232100_156232300
PB_novel_01945_0	chr1	-	138	1	Antisense	novelGene_ENSMUSG00000101523.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156353326	156353188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_156353200_156353300
PB_novel_01946_0	chr1	-	170	1	Intergenic	novelGene_4711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	156361544	156361374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_156361400_156361500
PB_novel_01947_0	chr1	+	332	1	Intergenic	novelGene_4712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATATTTT	4865	False	NA	NA	False	NA	NA	NA	156370924	156371256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_156370900_156371300
PB_novel_01948_0	chr1	-	179	1	Intergenic	novelGene_4713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	156385764	156385585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_156385600_156385800
PB_novel_01950_0	chr1	-	175	1	Intergenic	novelGene_4714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACCTATTAA	6850	False	NA	NA	False	NA	NA	NA	156424065	156423890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_156423900_156424100
PB_novel_01951_0	chr1	-	184	1	Intergenic	novelGene_4715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGATGGG	5668	False	NA	NA	False	NA	NA	NA	156425247	156425063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_156425100_156425200
PB_novel_01955_0	chr1	-	169	1	Intergenic	novelGene_4716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	349	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156504692	156504523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_156504500_156504700
PB_novel_01957_0	chr1	-	173	1	Intergenic	novelGene_4717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156510605	156510432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_156510400_156510600
PB_novel_01958_0	chr1	-	180	1	Intergenic	novelGene_4718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	156521694	156521514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_156521500_156521700
PB_novel_01965_0	chr1	+	176	1	Intergenic	novelGene_4719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	156706667	156706843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_156706700_156706800
PB_novel_01966_0	chr1	+	176	1	Intergenic	novelGene_4720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATCTTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	156749956	156750132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_156750000_156750100
PB_novel_01971_0	chr1	+	207	1	Intergenic	novelGene_4721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCCTTTTGAATAAAAG	NA	False	NA	NA	False	NA	NA	NA	156777201	156777408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_156777200_156777400
PB_novel_01976_0	chr1	+	177	1	Intergenic	novelGene_4722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	157052865	157053042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_157052900_157053000
PB_novel_01982_0	chr1	+	162	1	Intergenic	novelGene_4723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATATATAAATCTTGAAA	NA	False	NA	NA	False	NA	NA	NA	157254202	157254364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_157254200_157254400
PB_novel_01984_0	chr1	-	183	1	Intergenic	novelGene_4724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157273106	157272923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_157272900_157273100
PB_novel_01989_0	chr1	+	168	1	Intergenic	novelGene_4725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	157333707	157333875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_157333700_157333900
PB_novel_02008_0	chr1	-	173	1	Intergenic	novelGene_4726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	160157088	160156915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_160156900_160157100
PB_novel_02009_0	chr1	+	177	1	Intergenic	novelGene_4727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATCAT	NA	False	NA	NA	False	NA	NA	NA	160187901	160188078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_160187900_160188100
PB_novel_02017_0	chr1	+	173	1	Intergenic	novelGene_4728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAGAAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	160749431	160749604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_160749400_160749600
PB_novel_02019_0	chr1	-	180	1	Intergenic	novelGene_4729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGGGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	160750454	160750274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_160750300_160750500
PB_novel_02021_0	chr1	+	168	1	Intergenic	novelGene_4730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACCAAAACCAAAACC	NA	False	NA	NA	False	NA	NA	NA	160848423	160848591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_160848400_160848600
PB_novel_02022_0	chr1	+	217	1	Intergenic	novelGene_4731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAATAATAAAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	160849720	160849937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_160849700_160849900
PB_novel_02023_0	chr1	-	177	1	Intergenic	novelGene_4732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACAG	2604	False	NA	NA	False	NA	NA	NA	160876058	160875881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_160875900_160876100
PB_novel_02024_0	chr1	-	174	2	Intergenic	novelGene_4733	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACAG	NA	False	NA	NA	False	NA	NA	NA	160992608	160875881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_160875954_160992506
PB_novel_02028_0	chr1	-	176	1	Intergenic	novelGene_4734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGCAGTAATAC	NA	False	NA	NA	False	NA	NA	NA	160921916	160921740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_160921700_160921900
PB_novel_02034_0	chr1	+	187	1	Intergenic	novelGene_4735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAGAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	161070642	161070829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_161070600_161070800
PB_novel_02036_0	chr1	-	189	1	Intergenic	novelGene_4736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	161116367	161116178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_161116200_161116400
PB_novel_02037_0	chr1	+	169	1	Intergenic	novelGene_4737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAAGC	9302	False	NA	NA	False	NA	NA	NA	161160288	161160457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_161160300_161160500
PB_novel_02041_0	chr1	-	174	1	Intergenic	novelGene_4738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	161717245	161717071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_161717100_161717200
PB_novel_02055_0	chr1	+	177	1	Intergenic	novelGene_4739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGATTTTAA	3984	False	NA	NA	False	NA	NA	NA	163955315	163955492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_163955300_163955500
PB_novel_02058_0	chr1	+	181	1	Intergenic	novelGene_4740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	164024522	164024703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_164024500_164024700
PB_novel_02066_0	chr1	+	176	1	Intergenic	novelGene_4741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAGAAAGAG	8706	False	NA	NA	False	NA	NA	NA	164258006	164258182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_164258000_164258200
PB_novel_02070_0	chr1	+	1672	1	Intergenic	novelGene_4742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	7978	False	NA	NA	False	TTTAAA	-24	NA	164286092	164287764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_164286100_164287800
PB_novel_02072_0	chr1	+	2888	1	Intergenic	novelGene_4743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-42	NA	164292004	164294892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_164292000_164294900
PB_novel_02083_0	chr1	+	208	1	Intergenic	novelGene_4744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAATTATTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	165093116	165093324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_165093100_165093300
PB_novel_02091_0	chr1	+	169	1	Intergenic	novelGene_4745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAATAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	165377069	165377238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_165377100_165377200
PB_novel_02092_0	chr1	+	173	1	Intergenic	novelGene_4746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAACAAAACAAAATG	NA	False	NA	NA	False	NA	NA	NA	165406219	165406392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_165406200_165406400
PB_novel_02098_0	chr1	-	2208	1	NIC	ENSMUSG00000026566.16	novel	2285	6	NA	NA	-2	-23878	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	165462092	165459884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_165459900_165462100
PB_novel_02100_0	chr1	-	178	1	Intergenic	novelGene_4747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGAAAGAAATACAAG	7439	False	NA	NA	False	NA	NA	NA	165594519	165594341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_165594300_165594500
PB_novel_02103_0	chr1	-	5088	1	Intergenic	novelGene_4748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	165756178	165751090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_165751100_165756200
PB_novel_02105_0	chr1	+	176	1	Intergenic	novelGene_4749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAATCTCCC	6777	False	NA	NA	False	NA	NA	NA	165848452	165848628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_165848500_165848600
PB_novel_02108_1	chr1	-	175	1	Intergenic	novelGene_4750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAACAAAA	6077	False	NA	NA	False	NA	NA	NA	165942459	165942284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_165942300_165942500
PB_novel_02110_0	chr1	-	173	1	Intergenic	novelGene_4751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	7041	False	NA	NA	False	NA	NA	NA	165996326	165996153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_165996200_165996300
PB_novel_02111_0	chr1	-	204	1	Intergenic	novelGene_4752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	166094494	166094290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_166094300_166094500
PB_novel_02114_0	chr1	+	2140	1	Intergenic	novelGene_4753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	167075657	167077797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_167075700_167077800
PB_novel_02116_1	chr1	+	170	1	Intergenic	novelGene_4755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	167107377	167107547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_167107400_167107500
PB_novel_02117_1	chr1	+	1768	1	Intergenic	novelGene_4754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAAACAAAAAAAC	9642	False	NA	NA	False	NA	NA	NA	167098760	167100528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_167098800_167100500
PB_novel_02122_0	chr1	+	175	1	Intergenic	novelGene_4756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	167143226	167143401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_167143200_167143400
PB_novel_02129_0	chr1	+	173	1	Intergenic	novelGene_4757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	167143448	167143621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_167143400_167143600
PB_novel_02130_0	chr1	+	178	1	Intergenic	novelGene_4758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAACAAACAAACAC	NA	False	NA	NA	False	NA	NA	NA	167166056	167166234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_167166100_167166200
PB_novel_02131_0	chr1	-	167	1	Intergenic	novelGene_4759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACAAAACTTCA	NA	False	NA	NA	False	NA	NA	NA	167173735	167173568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_167173600_167173700
PB_novel_02132_0	chr1	-	176	1	Intergenic	novelGene_4760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGATAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	167179352	167179176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_167179200_167179400
PB_novel_02140_0	chr1	+	179	1	Intergenic	novelGene_4761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	167709064	167709243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_167709100_167709200
PB_novel_02144_0	chr1	-	166	1	Intergenic	novelGene_4762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	168270028	168269862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_168269900_168270000
PB_novel_02147_0	chr1	-	6205	1	Intergenic	novelGene_4763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	168457010	168450805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_168450800_168457000
PB_novel_02152_1	chr1	+	4272	2	Antisense	novelGene_ENSMUSG00000026667.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	170035490	170040775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_170038791_170039803
PB_novel_02154_0	chr1	-	205	1	Intergenic	novelGene_4764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	170142494	170142289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_170142300_170142500
PB_novel_02160_0	chr1	-	181	1	Intergenic	novelGene_4765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACTCAT	8036	False	NA	NA	False	NA	NA	NA	170636349	170636168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_170636200_170636300
PB_novel_02161_0	chr1	+	178	1	Intergenic	novelGene_4766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAATAAAAAAGGAGAA	9994	False	NA	NA	False	NA	NA	NA	170640904	170641082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_170640900_170641100
PB_novel_02164_0	chr1	+	174	1	Intergenic	novelGene_4767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	170686367	170686541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_170686400_170686500
PB_novel_02168_0	chr1	-	1591	1	NIC	ENSMUSG00000026659.14	novel	1875	5	NA	NA	4454	1710	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	170708119	170706528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_170706500_170708100
PB_novel_02172_0	chr1	-	176	1	Intergenic	novelGene_4768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAGAAAAAAA	4465	False	NA	NA	False	NA	NA	NA	170757374	170757198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_170757200_170757400
PB_novel_02173_0	chr1	+	164	1	Intergenic	novelGene_4769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTTTAAAAATATTTTAA	NA	False	NA	NA	False	NA	NA	NA	170759410	170759574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_170759400_170759600
PB_novel_02179_0	chr1	+	176	1	Intergenic	novelGene_4770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAACAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	170884330	170884506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_170884300_170884500
PB_novel_02183_0	chr1	+	187	1	Intergenic	novelGene_4771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAATAAATAAATCC	NA	False	NA	NA	False	NA	NA	NA	170914949	170915136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_170914900_170915100
PB_novel_02190_1	chr1	+	176	1	Intergenic	novelGene_4776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	171095777	171095953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_171095800_171096000
PB_novel_02193_0	chr1	+	176	1	Intergenic	novelGene_4772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAATAAATAA	2053	False	NA	NA	False	NA	NA	NA	171034909	171035085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_171034900_171035100
PB_novel_02194_0	chr1	+	176	1	Intergenic	novelGene_4773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATAAAATAA	2600	False	NA	NA	False	NA	NA	NA	171035456	171035632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_171035500_171035600
PB_novel_02195_0	chr1	+	172	1	Intergenic	novelGene_4774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAGGAGGAG	NA	False	NA	NA	False	NA	NA	NA	171089371	171089543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_171089400_171089500
PB_novel_02196_0	chr1	+	173	1	Intergenic	novelGene_4775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	171092299	171092472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_171092300_171092500
PB_novel_02203_0	chr1	+	175	1	Intergenic	novelGene_4777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTTTAAAAAACAAAACA	7857	False	NA	NA	False	NA	NA	NA	171133959	171134134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_171134000_171134100
PB_novel_02211_0	chr1	+	143	1	Intergenic	novelGene_4778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAATAAATAAATCTT	452	False	NA	NA	False	NA	NA	NA	171230328	171230471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_171230300_171230500
PB_novel_02213_0	chr1	-	177	1	Intergenic	novelGene_4779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATACTAAGATG	NA	False	NA	NA	False	NA	NA	NA	171260801	171260624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_171260600_171260800
PB_novel_02214_3	chr1	-	171	1	Intergenic	novelGene_4781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	4070	False	NA	NA	False	NA	NA	NA	171283883	171283712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_171283700_171283900
PB_novel_02216_0	chr1	+	166	1	Intergenic	novelGene_4780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTCTTAAAAAAAAAAAAAAA	9158	False	NA	NA	False	NA	NA	NA	171261333	171261499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_171261300_171261500
PB_novel_02218_0	chr1	+	174	1	Intergenic	novelGene_4782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACAG	4179	False	NA	NA	False	NA	NA	NA	171292254	171292428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_171292300_171292400
PB_novel_02226_0	chr1	+	155	1	Intergenic	novelGene_4783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAACAAACAAACAAATA	NA	False	NA	NA	False	NA	NA	NA	171450484	171450639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_171450500_171450600
PB_novel_02233_0	chr1	-	163	1	Intergenic	novelGene_4784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAGTAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	171859104	171858941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_171858900_171859100
PB_novel_02240_0	chr1	+	169	1	Intergenic	novelGene_4785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAATTAATTTAAAAAAAAA	8353	False	NA	NA	False	NA	NA	NA	171927840	171928009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_171927800_171928000
PB_novel_02241_0	chr1	-	161	1	Intergenic	novelGene_4786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	171959254	171959093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_171959100_171959300
PB_novel_02243_0	chr1	-	177	1	Intergenic	novelGene_4787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	171985611	171985434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_171985400_171985600
PB_novel_02248_0	chr1	+	153	1	Intergenic	novelGene_4788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	172253544	172253697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_172253500_172253700
PB_novel_02249_0	chr1	+	161	1	Intergenic	novelGene_4789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAAATATTAAAA	NA	False	NA	NA	False	NA	NA	NA	172255071	172255232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_172255100_172255200
PB_novel_02252_0	chr1	-	177	1	Intergenic	novelGene_4790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAGAG	4430	False	NA	NA	False	NA	NA	NA	172293568	172293391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_172293400_172293600
PB_novel_02256_0	chr1	+	175	1	Intergenic	novelGene_4791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAGTTACAGA	973	False	NA	NA	False	NA	NA	NA	172436278	172436453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_172436300_172436500
PB_novel_02261_0	chr1	+	173	1	Intergenic	novelGene_4792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTAAAAAAAAACCATGAAT	NA	False	NA	NA	False	NA	NA	NA	174234929	174235102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_174234900_174235100
PB_novel_02262_0	chr1	+	192	1	Intergenic	novelGene_4793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	174275166	174275358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_174275200_174275400
PB_novel_02269_0	chr1	+	162	1	Intergenic	novelGene_4794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAATATAATATAATATAAA	NA	False	NA	NA	False	NA	NA	NA	175663863	175664025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_175663900_175664000
PB_novel_02283_0	chr1	+	171	1	Intergenic	novelGene_4795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	177465458	177465629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_177465500_177465600
PB_novel_02288_0	chr1	+	168	1	Intergenic	novelGene_4796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAGAAATGTAAATAA	NA	False	NA	NA	False	NA	NA	NA	177630621	177630789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_177630600_177630800
PB_novel_02296_0	chr1	-	176	1	Intergenic	novelGene_4797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAACTCAACA	NA	False	NA	NA	False	NA	NA	NA	178036242	178036066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_178036100_178036200
PB_novel_02299_0	chr1	+	172	1	Intergenic	novelGene_4798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	178070451	178070623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_178070500_178070600
PB_novel_02301_0	chr1	-	130	1	Antisense	novelGene_ENSMUSG00000026502.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	178081005	178080875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_178080900_178081000
PB_novel_02310_0	chr1	+	5017	1	Antisense	novelGene_ENSMUSG00000039630.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAGTTTAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-1	NA	178158945	178163962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_178158900_178164000
PB_novel_02315_0	chr1	+	178	1	Intergenic	novelGene_4799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGTATTAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	178221303	178221481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_178221300_178221500
PB_novel_02316_0	chr1	+	2026	1	Intergenic	novelGene_4800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	178964957	178966983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_178965000_178967000
PB_novel_02317_0	chr1	-	197	1	Intergenic	novelGene_4801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAGTCAACT	NA	False	NA	NA	False	NA	NA	NA	179019472	179019275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_179019300_179019500
PB_novel_02318_0	chr1	+	176	1	Intergenic	novelGene_4802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGTAAATG	NA	False	NA	NA	False	NA	NA	NA	179046738	179046914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_179046700_179046900
PB_novel_02322_0	chr1	+	205	1	Intergenic	novelGene_4803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	179204187	179204392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_179204200_179204400
PB_novel_02324_0	chr1	+	5180	1	Intergenic	novelGene_4804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	AGTAAA	-11	NA	179324502	179329682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_179324500_179329700
PB_novel_02326_0	chr1	+	170	1	Intergenic	novelGene_4805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATACATAAATAAATACAT	NA	False	NA	NA	False	NA	NA	NA	179333312	179333482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_179333300_179333500
PB_novel_02328_0	chr1	-	3349	1	NIC	ENSMUSG00000055067.16	novel	6871	12	NA	NA	-6	-6356	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	179345576	179342227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr1_-_179342200_179345600
PB_novel_02343_0	chr1	-	181	1	Intergenic	novelGene_4806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAATGAAGAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	179685107	179684926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_179684900_179685100
PB_novel_02353_0	chr1	+	174	1	Intergenic	novelGene_4807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATATTAAAAAAAAA	4053	False	NA	NA	False	NA	NA	NA	180378992	180379166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_180379000_180379200
PB_novel_02358_0	chr1	+	172	1	Intergenic	novelGene_4808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	180466221	180466393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_180466200_180466400
PB_novel_02365_0	chr1	-	143	1	Antisense	novelGene_ENSMUSG00000026499.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAATCTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	180559557	180559414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_180559400_180559600
PB_novel_02367_0	chr1	+	158	1	Intergenic	novelGene_4809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	180579117	180579275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_180579100_180579300
PB_novel_02369_0	chr1	-	177	1	Intergenic	novelGene_4810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	180610363	180610186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_180610200_180610400
PB_novel_02372_2	chr1	-	177	1	Intergenic	novelGene_4811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	180627418	180627241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_180627200_180627400
PB_novel_02375_0	chr1	+	186	1	Intergenic	novelGene_4812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTATT	5331	False	NA	NA	False	NA	NA	NA	180646683	180646869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_180646700_180646900
PB_novel_02391_0	chr1	-	188	1	Intergenic	novelGene_4813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	180864736	180864548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_180864500_180864700
PB_novel_02393_0	chr1	+	181	1	Intergenic	novelGene_4814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAAAAAAGTAG	441	False	NA	NA	False	NA	NA	NA	180893708	180893889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_180893700_180893900
PB_novel_02402_1	chr1	+	177	1	Intergenic	novelGene_4815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	181018854	181019031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_181018900_181019000
PB_novel_02403_0	chr1	+	172	1	Intergenic	novelGene_4816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	39	False	NA	NA	False	NA	NA	NA	181051296	181051468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_181051300_181051500
PB_novel_02406_0	chr1	-	171	1	Intergenic	novelGene_4817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAATTAA	6349	False	NA	NA	False	NA	NA	NA	181137854	181137683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_181137700_181137900
PB_novel_02411_0	chr1	-	178	1	Intergenic	novelGene_4818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACTCGC	NA	False	NA	NA	False	NA	NA	NA	181636257	181636079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_181636100_181636300
PB_novel_02411_1	chr1	-	176	2	Intergenic	novelGene_4819	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACTCGC	NA	False	NA	NA	False	NA	NA	NA	181684027	181636079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_181636238_181684009
PB_novel_02413_0	chr1	+	169	1	Intergenic	novelGene_4820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCAATAAATCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	181662119	181662288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_181662100_181662300
PB_novel_02416_0	chr1	+	176	1	Intergenic	novelGene_4821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAGTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	181682702	181682878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_181682700_181682900
PB_novel_02420_0	chr1	+	154	1	Intergenic	novelGene_4822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	181717016	181717170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_181717000_181717200
PB_novel_02421_0	chr1	+	1367	1	Antisense	novelGene_ENSMUSG00000022995.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-11	NA	181727691	181729058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_181727700_181729100
PB_novel_02426_0	chr1	+	168	1	Antisense	novelGene_ENSMUSG00000102760.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	181834974	181835142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_181835000_181835100
PB_novel_02428_0	chr1	+	950	2	Intergenic	novelGene_4823	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	24	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATAAATGC	2292	False	NA	NA	False	NA	NA	NA	181856064	181857396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_181856461_181856842
PB_novel_02437_0	chr1	+	179	1	Intergenic	novelGene_4824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAACAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	181911366	181911545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_181911400_181911500
PB_novel_02443_0	chr1	+	176	1	Intergenic	novelGene_4825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	182019041	182019217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_182019000_182019200
PB_novel_02452_0	chr1	-	176	1	Intergenic	novelGene_4826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTTCTATTTAC	NA	False	NA	NA	False	NA	NA	NA	182487387	182487211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_182487200_182487400
PB_novel_02453_0	chr1	-	175	1	Intergenic	novelGene_4827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	182559721	182559546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_182559500_182559700
PB_novel_02464_0	chr1	-	157	1	Intergenic	novelGene_4828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAATAAAAAAAAATAAAT	3221	False	NA	NA	False	NA	NA	NA	183055418	183055261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_183055300_183055400
PB_novel_02465_0	chr1	+	188	1	Intergenic	novelGene_4829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTAAAAAAAGATAC	NA	False	NA	NA	False	NA	NA	NA	183060267	183060455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_183060300_183060500
PB_novel_02469_0	chr1	-	211	1	Intergenic	novelGene_4830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAGATAAAAC	NA	False	NA	NA	False	AATACA	-19	NA	183117784	183117573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_183117600_183117800
PB_novel_02478_0	chr1	-	175	1	Intergenic	novelGene_4831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAACAAATAAAACA	NA	False	NA	NA	False	NA	NA	NA	183304214	183304039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_183304000_183304200
PB_novel_02481_0	chr1	+	175	1	Intergenic	novelGene_4832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAACAAACAAACAAAACCCC	NA	False	NA	NA	False	NA	NA	NA	183820712	183820887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_183820700_183820900
PB_novel_02496_0	chr1	-	171	1	Intergenic	novelGene_4833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCTTTAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	185031742	185031571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_185031600_185031700
PB_novel_02497_1	chr1	-	177	2	Antisense	novelGene_ENSMUSG00000102526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	185103636	185031566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_185031619_185103511
PB_novel_02515_0	chr1	-	176	1	Intergenic	novelGene_4834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	186948923	186948747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_186948700_186948900
PB_novel_02530_0	chr1	+	167	1	Intergenic	novelGene_4835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAACCACAAAGA	NA	False	NA	NA	False	NA	NA	NA	189431842	189432009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_189431800_189432000
PB_novel_02534_0	chr1	-	175	1	Intergenic	novelGene_4836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAATAA	NA	False	NA	NA	False	NA	NA	NA	189591789	189591614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_189591600_189591800
PB_novel_02539_0	chr1	+	179	1	Intergenic	novelGene_4837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	190209228	190209407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_190209200_190209400
PB_novel_02542_0	chr1	-	173	1	Intergenic	novelGene_4838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	190743227	190743054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_190743100_190743200
PB_novel_02551_0	chr1	+	174	1	Intergenic	novelGene_4839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	191023277	191023451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_191023300_191023500
PB_novel_02558_0	chr1	+	2496	1	Intergenic	novelGene_4840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9392	False	NA	NA	False	NA	NA	NA	191107813	191110309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_191107800_191110300
PB_novel_02562_0	chr1	+	1686	1	Intergenic	novelGene_4841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3138	False	NA	NA	False	NA	NA	NA	191124201	191125887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_191124200_191125900
PB_novel_02563_0	chr1	+	175	1	Intergenic	novelGene_4842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	191133972	191134147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_191134000_191134100
PB_novel_02564_0	chr1	-	156	1	Intergenic	novelGene_4843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACCAATAAATAAATCTTAA	1150	False	NA	NA	False	NA	NA	NA	191163666	191163510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_191163500_191163700
PB_novel_02567_0	chr1	+	177	1	Intergenic	novelGene_4844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATACTCT	6193	False	NA	NA	False	NA	NA	NA	191231646	191231823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_191231600_191231800
PB_novel_02568_0	chr1	+	3023	1	Antisense	novelGene_ENSMUSG00000037474.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2421	False	NA	NA	False	AATAAA	-9	NA	191269552	191272575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_+_191269600_191272600
PB_novel_02570_0	chr1	+	155	1	Intergenic	novelGene_4845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATAAATATTTAAA	3902	False	NA	NA	False	NA	NA	NA	191285401	191285556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_191285400_191285600
PB_novel_02576_0	chr1	+	196	1	Intergenic	novelGene_4846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAATACAAAGCATAAT	3874	False	NA	NA	False	NA	NA	NA	191343331	191343527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_191343300_191343500
PB_novel_02577_0	chr1	-	1325	1	Antisense	novelGene_ENSMUSG00000037461.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	6366	False	NA	NA	False	NA	NA	NA	191356751	191355426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr1_-_191355400_191356800
PB_novel_02587_0	chr1	+	175	1	Intergenic	novelGene_4847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAAGGAAATACA	NA	False	NA	NA	False	NA	NA	NA	191701351	191701526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_191701400_191701500
PB_novel_02591_0	chr1	+	180	1	Intergenic	novelGene_4848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAAATATGT	NA	False	NA	NA	False	NA	NA	NA	192124589	192124769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_192124600_192124800
PB_novel_02602_0	chr1	-	175	1	Intergenic	novelGene_4849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAATCAACTA	NA	False	NA	NA	False	NA	NA	NA	192892575	192892400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_192892400_192892600
PB_novel_02604_0	chr1	+	196	1	Intergenic	novelGene_4850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	192936429	192936625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_192936400_192936600
PB_novel_02605_0	chr1	-	175	1	Intergenic	novelGene_4851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAACAAAGAG	NA	False	NA	NA	False	NA	NA	NA	193075312	193075137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_193075100_193075300
PB_novel_02606_0	chr1	+	177	1	Intergenic	novelGene_4852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	7722	False	NA	NA	False	NA	NA	NA	193215441	193215618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_193215400_193215600
PB_novel_02611_0	chr1	-	178	1	Intergenic	novelGene_4853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	703	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	194366961	194366783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_194366800_194367000
PB_novel_02618_1	chr1	-	175	1	Intergenic	novelGene_4854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	228	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAATTTAGA	NA	False	NA	NA	False	NA	NA	NA	195027899	195027724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_195027700_195027900
PB_novel_02620_0	chr10	-	178	1	Intergenic	novelGene_5876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	3417929	3417751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_3417800_3417900
PB_novel_02621_0	chr10	+	175	1	Intergenic	novelGene_5877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	3569381	3569556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_3569400_3569600
PB_novel_02622_0	chr10	+	173	1	Intergenic	novelGene_5878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1594	False	NA	NA	False	NA	NA	NA	3790971	3791144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_3791000_3791100
PB_novel_02624_0	chr10	-	182	1	Intergenic	novelGene_5879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAATCAAACTACAT	NA	False	NA	NA	False	NA	NA	NA	3885557	3885375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_3885400_3885600
PB_novel_02630_0	chr10	+	168	1	Intergenic	novelGene_5880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTTCTTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3957202	3957370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_3957200_3957400
PB_novel_02633_0	chr10	-	3717	1	Antisense	novelGene_ENSMUSG00000040675.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3983536	3979819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_3979800_3983500
PB_novel_02637_0	chr10	-	3314	1	Intergenic	novelGene_5881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGACTTAACAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-2	NA	4063638	4060324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_4060300_4063600
PB_novel_02640_0	chr10	+	171	1	Intergenic	novelGene_5883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	4172608	4172779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_4172600_4172800
PB_novel_02640_2	chr10	+	164	2	Intergenic	novelGene_5882	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATTAAAAAAAAAAACTTA	NA	False	NA	NA	False	NA	NA	NA	4172607	4315850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_4172732_4315810
PB_novel_02641_0	chr10	-	174	1	Intergenic	novelGene_5884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAACAAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	4178377	4178203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_4178200_4178400
PB_novel_02642_1	chr10	+	155	1	Intergenic	novelGene_5887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	4295443	4295598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_4295400_4295600
PB_novel_02648_1	chr10	-	3156	3	Antisense	novelGene_ENSMUSG00000038587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-27	NA	4305847	4216333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_4216667_4263740_4263857_4303140
PB_novel_02653_0	chr10	-	177	1	Intergenic	novelGene_5885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAAAAGAGGC	NA	False	NA	NA	False	NA	NA	NA	4241197	4241020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_4241000_4241200
PB_novel_02656_0	chr10	-	2229	1	Intergenic	novelGene_5886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4272929	4270700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_4270700_4272900
PB_novel_02659_0	chr10	+	2194	1	NIC	ENSMUSG00000038587.11	novel	5956	3	NA	NA	1	-16913	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4284545	4286739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_4284500_4286700
PB_novel_02663_0	chr10	-	173	1	Intergenic	novelGene_5888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	4351548	4351375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_4351400_4351500
PB_novel_02667_0	chr10	-	176	1	Intergenic	novelGene_5889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGACTTCC	NA	False	NA	NA	False	NA	NA	NA	4439303	4439127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_4439100_4439300
PB_novel_02669_0	chr10	-	173	1	Intergenic	novelGene_5890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	4780270	4780097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_4780100_4780300
PB_novel_02679_0	chr10	-	171	1	Intergenic	novelGene_5891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAACAAAAATAAACAAA	NA	False	NA	NA	False	NA	NA	NA	5759769	5759598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_5759600_5759800
PB_novel_02681_0	chr10	+	155	1	Intergenic	novelGene_5892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	5765025	5765180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_5765000_5765200
PB_novel_02682_0	chr10	+	177	1	Intergenic	novelGene_5893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5766384	5766561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_5766400_5766600
PB_novel_02689_0	chr10	+	172	1	Intergenic	novelGene_5894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	7018867	7019039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_7018900_7019000
PB_novel_02692_0	chr10	+	175	1	Intergenic	novelGene_5895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	7384333	7384508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_7384300_7384500
PB_novel_02698_0	chr10	+	173	1	Intergenic	novelGene_5896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	7493204	7493377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_7493200_7493400
PB_novel_02709_0	chr10	+	7625	1	NIC	ENSMUSG00000040021.14	novel	7209	8	NA	NA	12	-24736	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	7556989	7564614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_7557000_7564600
PB_novel_02712_0	chr10	-	193	1	Intergenic	novelGene_5897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAGTGGAAGCAGG	NA	False	NA	NA	False	NA	NA	NA	7621419	7621226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_7621200_7621400
PB_novel_02716_0	chr10	+	184	1	Antisense	novelGene_ENSMUSG00000040006.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAGTAAAGAGTGTA	331	False	NA	NA	False	NA	NA	NA	7667863	7668047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_7667900_7668000
PB_novel_02718_0	chr10	-	179	1	Intergenic	novelGene_5898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	6758	False	NA	NA	False	NA	NA	NA	7817831	7817652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_7817700_7817800
PB_novel_02732_0	chr10	+	175	1	Intergenic	novelGene_5899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8744146	8744321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_8744100_8744300
PB_novel_02743_0	chr10	+	177	1	Intergenic	novelGene_5900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAATCCTCAAAGAA	2580	False	NA	NA	False	NA	NA	NA	11152061	11152238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_11152100_11152200
PB_novel_02746_0	chr10	-	8016	1	Antisense	novelGene_ENSMUSG00000047648.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATATA	-27	NA	11169994	11161978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_11162000_11170000
PB_novel_02750_0	chr10	-	168	1	Intergenic	novelGene_5901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAACACAA	NA	False	NA	NA	False	NA	NA	NA	11183972	11183804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_11183800_11184000
PB_novel_02751_0	chr10	+	173	1	Intergenic	novelGene_5902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATAATCTTATTAAC	NA	False	NA	NA	False	NA	NA	NA	12318129	12318302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_12318100_12318300
PB_novel_02755_0	chr10	+	180	1	Intergenic	novelGene_5903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAATAGTAAACA	NA	False	NA	NA	False	NA	NA	NA	12554809	12554989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_12554800_12555000
PB_novel_02760_0	chr10	-	176	1	Intergenic	novelGene_5904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGCACGTCAAG	NA	False	NA	NA	False	NA	NA	NA	12673854	12673678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_12673700_12673900
PB_novel_02765_0	chr10	-	101	1	Intergenic	novelGene_5905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAAAAAGAAAACACAAG	8175	False	NA	26	True	NA	NA	NA	12805431	12805330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_12805300_12805400
PB_novel_02766_0	chr10	+	185	1	Intergenic	novelGene_5906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATAAATCTTAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	12840626	12840811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_12840600_12840800
PB_novel_02776_0	chr10	-	172	1	Intergenic	novelGene_5907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAGATAAGAAAAATA	4827	False	NA	0	True	NA	NA	NA	13319457	13319285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_13319300_13319500
PB_novel_02783_0	chr10	-	4730	1	Antisense	novelGene_ENSMUSG00000019808.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7867	False	NA	NA	False	NA	NA	NA	13438283	13433553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_13433600_13438300
PB_novel_02803_0	chr10	-	2336	1	Intergenic	novelGene_5909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	14534812	14532476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_14532500_14534800
PB_novel_02805_0	chr10	+	185	1	Intergenic	novelGene_5910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGTATAAGGA	NA	False	NA	NA	False	NA	NA	NA	15153953	15154138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_15154000_15154100
PB_novel_02809_1	chr10	-	2005	1	Genic_Genomic	ENSMUSG00000112478.2	novel	NA	NA	NA	NA	-1165	-3553	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAGAGAGAAAAGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	17200141	17198136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_17198100_17200100
PB_novel_02818_0	chr10	+	183	1	Intergenic	novelGene_5911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	18232819	18233002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_18232800_18233000
PB_novel_02819_0	chr10	-	176	1	Intergenic	novelGene_5912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	18257611	18257435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_18257400_18257600
PB_novel_02827_0	chr10	-	174	1	Intergenic	novelGene_5913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAGAGGGCAAG	NA	False	NA	NA	False	NA	NA	NA	18396031	18395857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_18395900_18396000
PB_novel_02828_0	chr10	-	172	1	Intergenic	novelGene_5914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAACTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	18406600	18406428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_18406400_18406600
PB_novel_02836_0	chr10	-	175	1	Intergenic	novelGene_5915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	19807192	19807017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_19807000_19807200
PB_novel_02837_0	chr10	+	175	1	Intergenic	novelGene_5916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATTTATAAAACC	NA	False	NA	NA	False	NA	NA	NA	19883094	19883269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_19883100_19883300
PB_novel_02840_0	chr10	+	177	1	Intergenic	novelGene_5917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4188	False	NA	NA	False	NA	NA	NA	19961308	19961485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_19961300_19961500
PB_novel_02841_0	chr10	-	177	1	Intergenic	novelGene_5918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAATA	NA	False	NA	NA	False	NA	NA	NA	19982686	19982509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_19982500_19982700
PB_novel_02852_0	chr10	-	231	1	Intergenic	novelGene_5919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	20225202	20224971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_20225000_20225200
PB_novel_02855_0	chr10	+	180	1	Intergenic	novelGene_5920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGGATTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	20247054	20247234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_20247100_20247200
PB_novel_02856_0	chr10	-	174	1	Intergenic	novelGene_5921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAGAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	20382250	20382076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_20382100_20382200
PB_novel_02859_0	chr10	+	180	1	Intergenic	novelGene_5922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20753687	20753867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_20753700_20753900
PB_novel_02865_0	chr10	-	208	1	Intergenic	novelGene_5923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAAAAAAAAATA	3360	False	NA	NA	False	NA	NA	NA	21407223	21407015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_21407000_21407200
PB_novel_02871_0	chr10	+	1776	1	NIC	ENSMUSG00000019970.16	novel	563	4	NA	NA	3	-9952	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21854573	21856349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_21854600_21856300
PB_novel_02878_0	chr10	-	175	1	Intergenic	novelGene_5924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGGAAGTT	NA	False	NA	NA	False	NA	NA	NA	21932978	21932803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_21932800_21933000
PB_novel_02894_0	chr10	-	181	1	Intergenic	novelGene_5925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23647905	23647724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_23647700_23647900
PB_novel_02896_0	chr10	-	2652	1	Intergenic	novelGene_5926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23661026	23658374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_23658400_23661000
PB_novel_02898_0	chr10	+	169	1	Intergenic	novelGene_5927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTCTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	23670026	23670195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_23670000_23670200
PB_novel_02900_0	chr10	-	171	1	Intergenic	novelGene_5928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAAATTTTTTTAATTA	NA	False	NA	NA	False	NA	NA	NA	23690529	23690358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_23690400_23690500
PB_novel_02904_0	chr10	-	176	1	Intergenic	novelGene_5929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGATAAAT	NA	False	NA	NA	False	NA	NA	NA	23714875	23714699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_23714700_23714900
PB_novel_02907_0	chr10	-	159	1	Intergenic	novelGene_5930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	23812640	23812481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_23812500_23812600
PB_novel_02910_0	chr10	-	171	1	Intergenic	novelGene_5931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	24140870	24140699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_24140700_24140900
PB_novel_02916_0	chr10	+	177	1	Intergenic	novelGene_5932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGCATACA	2109	False	NA	NA	False	NA	NA	NA	24642868	24643045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_24642900_24643000
PB_novel_02918_0	chr10	+	141	1	Intergenic	novelGene_5933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATTTG	NA	False	NA	NA	False	NA	NA	NA	24715919	24716060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_24715900_24716100
PB_novel_02929_0	chr10	+	174	1	Intergenic	novelGene_5934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAATATTCAA	NA	False	NA	NA	False	NA	NA	NA	25160747	25160921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_25160700_25160900
PB_novel_02930_0	chr10	-	176	1	Intergenic	novelGene_5935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	25177423	25177247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_25177200_25177400
PB_novel_02931_0	chr10	-	1164	1	Intergenic	novelGene_5936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATTAAAAAAAAAAAAAA	2150	False	NA	NA	False	NA	NA	NA	25244734	25243570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_25243600_25244700
PB_novel_02936_0	chr10	-	1809	1	Intergenic	novelGene_5937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAGTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25303621	25301812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_25301800_25303600
PB_novel_02940_0	chr10	-	176	1	Intergenic	novelGene_5938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAGATGTTTTAAATTT	NA	False	NA	NA	False	NA	NA	NA	25751732	25751556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_25751600_25751700
PB_novel_02943_0	chr10	-	175	1	Intergenic	novelGene_5939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAGAGAGACTA	NA	False	NA	NA	False	NA	NA	NA	26271684	26271509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_26271500_26271700
PB_novel_02945_0	chr10	+	176	1	Intergenic	novelGene_5940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4407	False	NA	NA	False	NA	NA	NA	26782912	26783088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_26782900_26783100
PB_novel_02959_0	chr10	-	177	1	Intergenic	novelGene_5941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	28244857	28244680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_28244700_28244900
PB_novel_02961_0	chr10	-	174	1	Intergenic	novelGene_5942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACACTC	NA	False	NA	NA	False	NA	NA	NA	28919014	28918840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_28918800_28919000
PB_novel_02969_0	chr10	+	175	1	Intergenic	novelGene_5943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATTAATACACAAA	NA	False	NA	NA	False	NA	NA	NA	30062023	30062198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_30062000_30062200
PB_novel_02976_0	chr10	+	174	1	Intergenic	novelGene_5944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	30610220	30610394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_30610200_30610400
PB_novel_02977_0	chr10	-	178	1	Intergenic	novelGene_5945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTTAAAAAAAGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30705787	30705609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_30705600_30705800
PB_novel_02979_0	chr10	-	2813	1	Intergenic	novelGene_5946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-27	NA	31212660	31209847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_31209800_31212700
PB_novel_02982_0	chr10	+	173	1	Intergenic	novelGene_5947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31281185	31281358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_31281200_31281400
PB_novel_02984_0	chr10	+	3533	1	Antisense	novelGene_ENSMUSG00000110758.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31302045	31305578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_31302000_31305600
PB_novel_02986_0	chr10	-	187	1	Intergenic	novelGene_5948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATTTCT	NA	False	NA	NA	False	NA	NA	NA	31334412	31334225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_31334200_31334400
PB_novel_02994_0	chr10	+	179	1	Intergenic	novelGene_5949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAGAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	32410514	32410693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_32410500_32410700
PB_novel_03000_0	chr10	-	180	1	Intergenic	novelGene_5950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	269	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33236559	33236379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_33236400_33236600
PB_novel_03001_0	chr10	+	177	1	Intergenic	novelGene_5951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	355	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33254322	33254499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_33254300_33254500
PB_novel_03007_0	chr10	+	169	1	Intergenic	novelGene_5952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAATATGTAAACG	NA	False	NA	NA	False	NA	NA	NA	33833392	33833561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_33833400_33833600
PB_novel_03008_0	chr10	-	175	1	Intergenic	novelGene_5953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	34044609	34044434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_34044400_34044600
PB_novel_03011_1	chr10	+	197	1	Intergenic	novelGene_5954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAATTTAA	NA	False	NA	NA	False	NA	NA	NA	34097787	34097984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_34097800_34098000
PB_novel_03014_0	chr10	-	178	1	Intergenic	novelGene_5955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAGAAAAAAGAAGATTT	9153	False	NA	NA	False	NA	NA	NA	34169425	34169247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_34169200_34169400
PB_novel_03017_0	chr10	+	144	1	Intergenic	novelGene_5956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTTTTTTAAAGCC	5403	False	NA	NA	False	NA	NA	NA	34290311	34290455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_34290300_34290500
PB_novel_03019_0	chr10	+	176	1	Intergenic	novelGene_5957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	34872574	34872750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_34872600_34872800
PB_novel_03022_0	chr10	+	186	1	Intergenic	novelGene_5958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTAAAAAAAAAGAATTATG	NA	False	NA	NA	False	NA	NA	NA	35468471	35468657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_35468500_35468700
PB_novel_03024_0	chr10	-	134	1	Intergenic	novelGene_5959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	29	False	NA	NA	False	NA	NA	NA	35711853	35711719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_35711700_35711900
PB_novel_03027_0	chr10	-	170	1	Intergenic	novelGene_5960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAATGATGGA	NA	False	NA	NA	False	NA	NA	NA	36416972	36416802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_36416800_36417000
PB_novel_03031_0	chr10	+	177	1	Intergenic	novelGene_5961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAGAAAGAAAGAA	6407	False	NA	NA	False	NA	NA	NA	37003459	37003636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_37003500_37003600
PB_novel_03036_0	chr10	-	174	1	Intergenic	novelGene_5962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAATGGGGTACAGAA	NA	False	NA	NA	False	NA	NA	NA	38579430	38579256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_38579300_38579400
PB_novel_03037_0	chr10	-	190	1	Intergenic	novelGene_5963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAGAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	38712813	38712623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_38712600_38712800
PB_novel_03043_0	chr10	+	173	1	Intergenic	novelGene_5964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	39308018	39308191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_39308000_39308200
PB_novel_03063_0	chr10	-	177	1	Intergenic	novelGene_5965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	39676791	39676614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_39676600_39676800
PB_novel_03068_0	chr10	-	183	1	Intergenic	novelGene_5966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAAACAAAACAC	NA	False	NA	NA	False	NA	NA	NA	39915692	39915509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_39915500_39915700
PB_novel_03072_0	chr10	-	176	1	Intergenic	novelGene_5967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGAAGCTGGGG	3900	False	NA	NA	False	NA	NA	NA	40021493	40021317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_40021300_40021500
PB_novel_03075_0	chr10	+	163	1	Intergenic	novelGene_5968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATCTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40092396	40092559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_40092400_40092600
PB_novel_03077_0	chr10	-	176	1	Intergenic	novelGene_5969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	40104650	40104474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_40104500_40104600
PB_novel_03080_0	chr10	-	176	1	Intergenic	novelGene_5970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAATTAAAAGAAA	5922	False	NA	NA	False	NA	NA	NA	40129106	40128930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_40128900_40129100
PB_novel_03083_0	chr10	-	176	1	Intergenic	novelGene_5971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTGAG	NA	False	NA	NA	False	NA	NA	NA	40145238	40145062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_40145100_40145200
PB_novel_03085_0	chr10	+	180	1	Intergenic	novelGene_5972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40166840	40167020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_40166800_40167000
PB_novel_03091_0	chr10	+	176	1	Intergenic	novelGene_5973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGGTACCTT	NA	False	NA	NA	False	NA	NA	NA	40234817	40234993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_40234800_40235000
PB_novel_03106_0	chr10	-	175	1	Intergenic	novelGene_5974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAATAAATTA	NA	False	NA	NA	False	NA	NA	NA	40838784	40838609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_40838600_40838800
PB_novel_03107_0	chr10	+	176	1	Intergenic	novelGene_5975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	40841142	40841318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_40841100_40841300
PB_novel_03110_0	chr10	+	172	1	Intergenic	novelGene_5976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTTTAAAAAAAGATATA	NA	False	NA	NA	False	NA	NA	NA	41167681	41167853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_41167700_41167900
PB_novel_03112_0	chr10	+	177	1	Intergenic	novelGene_5977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	41197164	41197341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_41197200_41197300
PB_novel_03119_0	chr10	+	177	1	Intergenic	novelGene_5978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	41339116	41339293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_41339100_41339300
PB_novel_03125_0	chr10	+	180	1	Intergenic	novelGene_5979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	41368251	41368431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_41368300_41368400
PB_novel_03131_0	chr10	-	174	1	Antisense	novelGene_ENSMUSG00000093298.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACGAAAATTTAAAATCC	NA	False	NA	NA	False	NA	NA	NA	41546752	41546578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_41546600_41546800
PB_novel_03134_0	chr10	+	162	1	Intergenic	novelGene_5980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAATAAATCTTTAA	NA	False	NA	NA	False	NA	NA	NA	41573792	41573954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_41573800_41574000
PB_novel_03140_15	chr10	-	2876	1	FSM	ENSMUSG00000085666.4	ENSMUST00000121229.2	1194	1	-127	-1555	-127	1555	mono-exon	FALSE	NA	NA	NA	NA	NA	2342	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	2335	False	NA	NA	False	ATTAAA	-15	NA	41931429	41928553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_41928600_41931400
PB_novel_03154_0	chr10	+	176	1	Intergenic	novelGene_5981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCAC	NA	False	NA	NA	False	NA	NA	NA	42318487	42318663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_42318500_42318700
PB_novel_03163_0	chr10	+	157	1	Intergenic	novelGene_5982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	42523896	42524053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_42523900_42524100
PB_novel_03164_0	chr10	+	174	1	Intergenic	novelGene_5983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGTCCAAAGT	1262	False	NA	NA	False	NA	NA	NA	42536370	42536544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_42536400_42536500
PB_novel_03168_0	chr10	-	176	1	Intergenic	novelGene_5984	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	42649449	42649273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_42649300_42649400
PB_novel_03174_0	chr10	-	3046	2	Antisense	novelGene_ENSMUSG00000038240.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	1	5	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43235356	43230432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_43231180_43233057
PB_novel_03175_0	chr10	-	4130	1	Intergenic	novelGene_5985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43235356	43231226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_43231200_43235400
PB_novel_03176_0	chr10	+	135	1	Intergenic	novelGene_5986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAACAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	43245735	43245870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_43245700_43245900
PB_novel_03180_0	chr10	+	182	1	Intergenic	novelGene_5987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	43399795	43399977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_43399800_43400000
PB_novel_03186_0	chr10	-	172	1	Intergenic	novelGene_5988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7603	False	NA	NA	False	NA	NA	NA	43448941	43448769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_43448800_43448900
PB_novel_03202_0	chr10	-	173	1	Intergenic	novelGene_5989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATCTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44959380	44959207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_44959200_44959400
PB_novel_03210_0	chr10	-	4169	1	Genic_Genomic	ENSMUSG00000063804.9	novel	NA	NA	NA	NA	216	-25428	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45362275	45358106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_45358100_45362300
PB_novel_03216_0	chr10	+	177	1	Intergenic	novelGene_5990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATTAACAAATTA	NA	False	NA	NA	False	NA	NA	NA	46676294	46676471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_46676300_46676500
PB_novel_03220_0	chr10	+	203	1	Intergenic	novelGene_5991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	47658790	47658993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_47658800_47659000
PB_novel_03223_0	chr10	-	166	1	Intergenic	novelGene_5992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATTTAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	49310206	49310040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_49310000_49310200
PB_novel_03224_0	chr10	+	177	1	Intergenic	novelGene_5993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAATATTA	NA	False	NA	NA	False	NA	NA	NA	49453858	49454035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_49453900_49454000
PB_novel_03234_1	chr10	+	186	1	Intergenic	novelGene_5995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAATGTCCCAAAT	NA	False	NA	NA	False	NA	NA	NA	52125396	52125582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_52125400_52125600
PB_novel_03235_0	chr10	+	158	1	Intergenic	novelGene_5994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAATAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52090034	52090192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_52090000_52090200
PB_novel_03243_0	chr10	-	158	1	Intergenic	novelGene_5996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAAAATTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	52206188	52206030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_52206000_52206200
PB_novel_03254_0	chr10	-	177	1	Antisense	novelGene_ENSMUSG00000112824.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53940908	53940731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_53940700_53940900
PB_novel_03257_0	chr10	+	172	1	Intergenic	novelGene_5997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55003352	55003524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_55003400_55003500
PB_novel_03259_0	chr10	+	116	1	Intergenic	novelGene_5998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55962760	55962876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_55962800_55962900
PB_novel_03261_0	chr10	-	180	1	Intergenic	novelGene_5999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	182	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56099836	56099656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_56099700_56099800
PB_novel_03262_0	chr10	-	179	1	Intergenic	novelGene_6000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAGGAAAGAAG	6436	False	NA	NA	False	NA	NA	NA	56222229	56222050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_56222000_56222200
PB_novel_03266_0	chr10	-	206	1	Intergenic	novelGene_6001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56514084	56513878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_56513900_56514100
PB_novel_03282_0	chr10	+	178	1	Intergenic	novelGene_6002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAGAAATTCCAA	NA	False	NA	NA	False	NA	NA	NA	58139588	58139766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_58139600_58139800
PB_novel_03284_0	chr10	+	198	1	Intergenic	novelGene_6003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATGTT	NA	False	NA	NA	False	NA	NA	NA	58154952	58155150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_58155000_58155200
PB_novel_03285_0	chr10	-	175	1	Intergenic	novelGene_6004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAAACATTAC	NA	False	NA	NA	False	NA	NA	NA	58210559	58210384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_58210400_58210600
PB_novel_03287_0	chr10	-	176	1	Intergenic	novelGene_6005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAATCACTTTGT	NA	False	NA	NA	False	NA	NA	NA	58233417	58233241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_58233200_58233400
PB_novel_03288_0	chr10	-	3894	1	Intergenic	novelGene_6006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-12	NA	58240230	58236336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_58236300_58240200
PB_novel_03295_0	chr10	+	184	1	Intergenic	novelGene_6007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	623	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	32	False	NA	NA	False	NA	NA	NA	58394420	58394604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_58394400_58394600
PB_novel_03296_0	chr10	+	176	1	Intergenic	novelGene_6008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGATATAAATACTA	2556	False	NA	NA	False	NA	NA	NA	58396944	58397120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_58396900_58397100
PB_novel_03303_0	chr10	-	158	1	Intergenic	novelGene_6009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAATAAAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	59117213	59117055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_59117100_59117200
PB_novel_03306_0	chr10	+	90	1	Antisense	novelGene_ENSMUSG00000009647.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TATAAA	-35	NA	59283719	59283809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_59283700_59283800
PB_novel_03308_0	chr10	+	2634	1	Intergenic	novelGene_6010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59428592	59431226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_59428600_59431200
PB_novel_03310_0	chr10	+	186	1	Intergenic	novelGene_6011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	308	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATCTTAAAAAAAAAGAA	7850	False	NA	NA	False	NA	NA	NA	59548703	59548889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_59548700_59548900
PB_novel_03314_0	chr10	-	177	1	Intergenic	novelGene_6015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	311	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59830077	59829900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_59829900_59830100
PB_novel_03320_0	chr10	+	159	1	Intergenic	novelGene_6012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	59772662	59772821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_59772700_59772800
PB_novel_03321_0	chr10	+	174	1	Intergenic	novelGene_6013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	59773764	59773938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_59773800_59773900
PB_novel_03323_0	chr10	-	176	1	Intergenic	novelGene_6014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAACAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	59783062	59782886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_59782900_59783100
PB_novel_03328_0	chr10	-	179	1	Intergenic	novelGene_6016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	8877	False	NA	NA	False	NA	NA	NA	59849912	59849733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_59849700_59849900
PB_novel_03335_0	chr10	+	177	1	Intergenic	novelGene_6017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	2233	False	NA	NA	False	NA	NA	NA	59919069	59919246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_59919100_59919200
PB_novel_03343_0	chr10	-	178	1	Intergenic	novelGene_6018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAGAAAAGAATAA	NA	False	NA	NA	False	NA	NA	NA	60058421	60058243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_60058200_60058400
PB_novel_03346_0	chr10	+	178	1	Intergenic	novelGene_6019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAGGAGTAAAA	2933	False	NA	NA	False	NA	NA	NA	60081810	60081988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_60081800_60082000
PB_novel_03353_0	chr10	+	181	1	Intergenic	novelGene_6020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	60176095	60176276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_60176100_60176300
PB_novel_03354_0	chr10	-	178	1	Intergenic	novelGene_6021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTGAAAGAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	60362931	60362753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_60362800_60362900
PB_novel_03358_0	chr10	+	176	1	Intergenic	novelGene_6022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAGAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	60597086	60597262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_60597100_60597300
PB_novel_03359_0	chr10	-	147	1	Intergenic	novelGene_6023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAAAAATCTTA	NA	False	NA	NA	False	NA	NA	NA	60605269	60605122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_60605100_60605300
PB_novel_03364_0	chr10	-	158	1	Intergenic	novelGene_6024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATTAATT	9743	False	NA	NA	False	NA	NA	NA	60728453	60728295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_60728300_60728500
PB_novel_03369_0	chr10	-	178	1	Intergenic	novelGene_6025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGACTTGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	60918232	60918054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_60918100_60918200
PB_novel_03378_0	chr10	+	158	1	Intergenic	novelGene_6026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATAAAGTAAATAAATAATC	NA	False	NA	NA	False	NA	NA	NA	61025351	61025509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_61025400_61025500
PB_novel_03381_0	chr10	+	177	1	Intergenic	novelGene_6029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTGCAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	61154745	61154922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_61154700_61154900
PB_novel_03382_0	chr10	+	179	1	Intergenic	novelGene_6027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTCAAAAAAAAAATTAAA	NA	False	NA	NA	False	NA	NA	NA	61129297	61129476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_61129300_61129500
PB_novel_03384_0	chr10	-	175	1	Intergenic	novelGene_6028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAAAAAAAAACTGGTG	NA	False	NA	NA	False	NA	NA	NA	61151114	61150939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_61150900_61151100
PB_novel_03386_0	chr10	+	188	1	Intergenic	novelGene_6030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATCAATTTTGCT	NA	False	NA	NA	False	NA	NA	NA	61162031	61162219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_61162000_61162200
PB_novel_03389_0	chr10	+	182	1	Intergenic	novelGene_6031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGAAAAATAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61194996	61195178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_61195000_61195200
PB_novel_03393_0	chr10	-	176	1	Intergenic	novelGene_6033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	61239669	61239493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_61239500_61239700
PB_novel_03394_0	chr10	+	177	1	Intergenic	novelGene_6032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	61232850	61233027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_61232800_61233000
PB_novel_03404_0	chr10	-	1668	1	Genic_Genomic	ENSMUSG00000020091.16	novel	NA	NA	NA	NA	-130	-18304	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61288570	61286902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_61286900_61288600
PB_novel_03409_0	chr10	+	174	1	Intergenic	novelGene_6034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAATAAACTAACAT	4789	False	NA	NA	False	NA	NA	NA	61356796	61356970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_61356800_61357000
PB_novel_03413_0	chr10	-	176	1	Antisense	novelGene_ENSMUSG00000112255.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGAGAGAGAGAGAAAGAG	7396	False	NA	NA	False	NA	NA	NA	61409307	61409131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_61409100_61409300
PB_novel_03418_0	chr10	-	2018	1	Antisense	novelGene_ENSMUSG00000020089.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61495609	61493591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_61493600_61495600
PB_novel_03419_0	chr10	+	176	1	Intergenic	novelGene_6035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	61494474	61494650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_61494500_61494600
PB_novel_03421_0	chr10	+	174	1	Intergenic	novelGene_6036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	61554401	61554575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_61554400_61554600
PB_novel_03422_0	chr10	-	241	1	Intergenic	novelGene_6037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAATAACAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	61555017	61554776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_61554800_61555000
PB_novel_03428_0	chr10	+	1347	1	Antisense	novelGene_ENSMUSG00000020086.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	61619212	61620559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_61619200_61620600
PB_novel_03434_0	chr10	-	175	1	Intergenic	novelGene_6038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATTTTAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	61680331	61680156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_61680200_61680300
PB_novel_03438_0	chr10	-	2801	1	Intergenic	novelGene_6039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61768344	61765543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_61765500_61768300
PB_novel_03439_0	chr10	+	192	1	Intergenic	novelGene_6040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	61794937	61795129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_61794900_61795100
PB_novel_03440_0	chr10	+	176	1	Intergenic	novelGene_6041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAACAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	61802361	61802537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_61802400_61802500
PB_novel_03444_0	chr10	-	158	1	Intergenic	novelGene_6042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAACCTCATATAAAT	1895	False	NA	NA	False	NA	NA	NA	61977257	61977099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_61977100_61977300
PB_novel_03449_0	chr10	+	166	1	Intergenic	novelGene_6043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAATAAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	62182897	62183063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62182900_62183100
PB_novel_03454_1	chr10	-	177	1	Intergenic	novelGene_6044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62263411	62263234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62263200_62263400
PB_novel_03461_0	chr10	+	166	1	Intergenic	novelGene_6045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAATTAAAAAAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	62359044	62359210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62359000_62359200
PB_novel_03462_0	chr10	-	172	1	Intergenic	novelGene_6046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAGTCAAGG	NA	False	NA	NA	False	NA	NA	NA	62384261	62384089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62384100_62384300
PB_novel_03465_0	chr10	+	181	1	Intergenic	novelGene_6047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62407718	62407899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62407700_62407900
PB_novel_03467_0	chr10	+	160	1	Intergenic	novelGene_6048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAAATCAACCCC	2157	False	NA	NA	False	NA	NA	NA	62434809	62434969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62434800_62435000
PB_novel_03468_0	chr10	+	174	1	Intergenic	novelGene_6049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGATTAAA	3602	False	NA	NA	False	NA	NA	NA	62436254	62436428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62436300_62436400
PB_novel_03474_0	chr10	+	164	1	Intergenic	novelGene_6050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGTCTGG	NA	False	NA	NA	False	NA	NA	NA	62528968	62529132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62529000_62529100
PB_novel_03480_0	chr10	-	176	1	Intergenic	novelGene_6063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATATATTTTTATTA	606	False	NA	NA	False	NA	NA	NA	62763795	62763619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62763600_62763800
PB_novel_03481_0	chr10	-	173	1	Intergenic	novelGene_6064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAAAAAAAAG	5418	False	NA	NA	False	NA	NA	NA	62772413	62772240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62772200_62772400
PB_novel_03482_0	chr10	+	176	1	Intergenic	novelGene_6051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	5664	False	NA	NA	False	NA	NA	NA	62608044	62608220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62608000_62608200
PB_novel_03483_0	chr10	-	177	1	Intergenic	novelGene_6059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAACCTA	NA	False	NA	NA	False	NA	NA	NA	62737218	62737041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62737000_62737200
PB_novel_03485_0	chr10	+	131	1	Intergenic	novelGene_6052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAACAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	62628399	62628530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62628400_62628500
PB_novel_03487_0	chr10	+	164	1	Intergenic	novelGene_6053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATCTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62634748	62634912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62634700_62634900
PB_novel_03491_0	chr10	-	2757	1	Intergenic	novelGene_6054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CCAAAAAAAAAAAAAAAAAG	3933	False	NA	NA	False	NA	NA	NA	62661447	62658690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62658700_62661400
PB_novel_03492_0	chr10	+	1773	1	Intergenic	novelGene_6055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACTCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62666457	62668230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62666500_62668200
PB_novel_03499_0	chr10	+	175	1	Intergenic	novelGene_6056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62716651	62716826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62716700_62716800
PB_novel_03501_0	chr10	+	158	1	Intergenic	novelGene_6057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAAACTTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	62727932	62728090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62727900_62728100
PB_novel_03502_0	chr10	+	118	1	Intergenic	novelGene_6058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	62734466	62734584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_62734500_62734600
PB_novel_03505_0	chr10	-	177	1	Intergenic	novelGene_6060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATAGATAGATAGA	2495	False	NA	NA	False	NA	NA	NA	62754063	62753886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62753900_62754100
PB_novel_03506_1	chr10	-	177	1	Intergenic	novelGene_6061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2141	False	NA	NA	False	NA	NA	NA	62762260	62762083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62762100_62762300
PB_novel_03507_1	chr10	-	177	1	Intergenic	novelGene_6062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	1273	False	NA	NA	False	NA	NA	NA	62763128	62762951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62763000_62763100
PB_novel_03512_0	chr10	-	177	1	Intergenic	novelGene_6065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACTATTTC	NA	False	NA	NA	False	NA	NA	NA	62818886	62818709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62818700_62818900
PB_novel_03513_0	chr10	-	188	1	Intergenic	novelGene_6066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAATAAAATGCAAAAATA	NA	False	NA	NA	False	NA	NA	NA	62819130	62818942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62818900_62819100
PB_novel_03518_0	chr10	-	214	1	Intergenic	novelGene_6067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGTTTAAAAAAAAAAAAAAA	8480	False	NA	NA	False	NA	NA	NA	62871331	62871117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62871100_62871300
PB_novel_03524_0	chr10	-	178	1	Intergenic	novelGene_6068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAGAAAAGTCAAAGG	NA	False	NA	NA	False	NA	NA	NA	62977504	62977326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_62977300_62977500
PB_novel_03528_0	chr10	-	160	1	Intergenic	novelGene_6069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACTTTCCA	NA	False	NA	NA	False	NA	NA	NA	63112494	63112334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_63112300_63112500
PB_novel_03543_0	chr10	-	177	1	Intergenic	novelGene_6070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACGCAGG	2866	False	NA	NA	False	NA	NA	NA	63241286	63241109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_63241100_63241300
PB_novel_03545_0	chr10	-	144	1	Intergenic	novelGene_6071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	63248088	63247944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_63247900_63248100
PB_novel_03557_0	chr10	-	168	1	Intergenic	novelGene_6072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGACATTTC	NA	False	NA	NA	False	NA	NA	NA	64544635	64544467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_64544500_64544600
PB_novel_03567_0	chr10	-	177	1	Intergenic	novelGene_6073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66722523	66722346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_66722300_66722500
PB_novel_03568_0	chr10	+	174	1	Intergenic	novelGene_6074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66740106	66740280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_66740100_66740300
PB_novel_03569_0	chr10	+	181	1	Intergenic	novelGene_6076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	397	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66915390	66915571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_66915400_66915600
PB_novel_03571_0	chr10	+	135	1	Intergenic	novelGene_6075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66771066	66771201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_66771100_66771200
PB_novel_03586_0	chr10	+	161	1	Intergenic	novelGene_6077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGATAAATAAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	67048096	67048257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_67048100_67048300
PB_novel_03589_0	chr10	-	177	1	Intergenic	novelGene_6078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67122010	67121833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_67121800_67122000
PB_novel_03591_0	chr10	-	185	1	Intergenic	novelGene_6079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATTTAAAAAATTATTTT	NA	False	NA	NA	False	NA	NA	NA	67125754	67125569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_67125600_67125800
PB_novel_03612_0	chr10	+	1133	1	Intergenic	novelGene_6080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	68063670	68064803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_68063700_68064800
PB_novel_03613_0	chr10	+	1494	1	Intergenic	novelGene_6081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-25	NA	68074796	68076290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_68074800_68076300
PB_novel_03615_0	chr10	+	177	1	Intergenic	novelGene_6082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGTTGGCA	7640	False	NA	NA	False	NA	NA	NA	68145429	68145606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_68145400_68145600
PB_novel_03621_0	chr10	-	167	1	Intergenic	novelGene_6083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTAAAAAAAGAAGAACTA	NA	False	NA	NA	False	NA	NA	NA	69144155	69143988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_69144000_69144200
PB_novel_03631_0	chr10	+	136	1	Intergenic	novelGene_6084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69189113	69189249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_69189100_69189200
PB_novel_03632_0	chr10	+	175	1	Intergenic	novelGene_6085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	271	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACCAAAAAAAAAACCAAAAA	401	False	NA	NA	False	NA	NA	NA	69192496	69192671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_69192500_69192700
PB_novel_03640_0	chr10	-	169	1	Intergenic	novelGene_6086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAACAAGGGG	NA	False	NA	NA	False	NA	NA	NA	69443383	69443214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_69443200_69443400
PB_novel_03643_0	chr10	-	178	1	Intergenic	novelGene_6087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	69626149	69625971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_69626000_69626100
PB_novel_03648_0	chr10	-	2122	1	Intergenic	novelGene_6088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69859568	69857446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_69857400_69859600
PB_novel_03649_0	chr10	+	173	1	Intergenic	novelGene_6089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	1650	False	NA	NA	False	NA	NA	NA	69897192	69897365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_69897200_69897400
PB_novel_03651_0	chr10	-	176	1	Intergenic	novelGene_6090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATCACA	NA	False	NA	NA	False	NA	NA	NA	69959897	69959721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_69959700_69959900
PB_novel_03653_0	chr10	-	950	1	Antisense	novelGene_ENSMUSG00000048701.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGGACAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70027980	70027030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_70027000_70028000
PB_novel_03667_0	chr10	-	178	1	Intergenic	novelGene_6091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATTTAAAAAATTTTTTA	NA	False	NA	NA	False	NA	NA	NA	70691469	70691291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_70691300_70691500
PB_novel_03669_0	chr10	-	174	1	Intergenic	novelGene_6092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATACATTTTAGTT	NA	False	NA	NA	False	NA	NA	NA	70845465	70845291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_70845300_70845500
PB_novel_03678_0	chr10	-	378	1	Intergenic	novelGene_6093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAAGAAAG	335	False	NA	NA	False	NA	NA	NA	71159514	71159136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_71159100_71159500
PB_novel_03679_0	chr10	+	174	1	Intergenic	novelGene_6094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	71171794	71171968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_71171800_71172000
PB_novel_03680_0	chr10	+	186	1	Intergenic	novelGene_6095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGCATTATTAAAA	1289	False	NA	NA	False	NA	NA	NA	71182665	71182851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_71182700_71182900
PB_novel_03681_0	chr10	+	4837	1	NIC	ENSMUSG00000060733.14	novel	5447	6	NA	NA	1	-11207	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	2290	False	NA	NA	False	NA	NA	NA	71183666	71188503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_71183700_71188500
PB_novel_03686_0	chr10	+	490	1	Intergenic	novelGene_6096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACGCAAAAAAAAAAAAAAAC	NA	False	NA	36	True	AATAAA	-17	NA	71543195	71543685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_71543200_71543700
PB_novel_03688_0	chr10	+	4977	1	FSM	ENSMUSG00000053830.5	ENSMUST00000217785.2	1836	1	-117	-3024	-117	3024	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TATAAA	-11	NA	72145033	72150010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_72145000_72150000
PB_novel_03703_0	chr10	-	199	1	Intergenic	novelGene_6097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACGTTGAAAGGGAAAG	NA	False	NA	NA	False	NA	NA	NA	74924949	74924750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_74924800_74924900
PB_novel_03707_0	chr10	-	178	1	Intergenic	novelGene_6098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	75033248	75033070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_75033100_75033200
PB_novel_03708_0	chr10	+	3199	1	Genic_Genomic	ENSMUSG00000033444.15	novel	NA	NA	NA	NA	-19	-28666	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGCCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75047885	75051084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_+_75047900_75051100
PB_novel_03714_0	chr10	-	156	1	Intergenic	novelGene_6099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	75365688	75365532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_75365500_75365700
PB_novel_03717_0	chr10	-	170	1	Intergenic	novelGene_6100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAGAAAGGTTTAAC	NA	False	NA	NA	False	NA	NA	NA	75403110	75402940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_75402900_75403100
PB_novel_03719_0	chr10	-	438	1	Intergenic	novelGene_6101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9974	False	NA	NA	False	NA	NA	NA	75424485	75424047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_75424000_75424500
PB_novel_03721_0	chr10	-	176	1	Intergenic	novelGene_6102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAATATTAGAACC	NA	False	NA	NA	False	NA	NA	NA	75454681	75454505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_75454500_75454700
PB_novel_03728_0	chr10	-	173	1	Intergenic	novelGene_6103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTAAAAAAAAAAAAAGAATT	1360	False	NA	NA	False	NA	NA	NA	75666715	75666542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_75666500_75666700
PB_novel_03731_0	chr10	+	176	1	Intergenic	novelGene_6104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75679958	75680134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_75680000_75680100
PB_novel_03742_0	chr10	+	4643	1	Antisense	novelGene_ENSMUSG00000000902.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-25	NA	75751393	75756036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_75751400_75756000
PB_novel_03748_0	chr10	-	170	1	Intergenic	novelGene_6105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	544	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATTTAAA	6699	False	NA	NA	False	NA	NA	NA	75791882	75791712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_75791700_75791900
PB_novel_03749_0	chr10	-	205	1	Intergenic	novelGene_6106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTTTACAAAAATAAATA	5821	False	NA	NA	False	NA	NA	NA	75792760	75792555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_75792600_75792800
PB_novel_03752_0	chr10	+	176	1	Intergenic	novelGene_6107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	75802820	75802996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_75802800_75803000
PB_novel_03756_0	chr10	+	174	1	Intergenic	novelGene_6108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAACACTAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	75885691	75885865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_75885700_75885900
PB_novel_03758_0	chr10	+	178	1	Intergenic	novelGene_6109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAAAAGTCAAC	6680	False	NA	NA	False	NA	NA	NA	75900127	75900305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_75900100_75900300
PB_novel_03759_0	chr10	-	184	1	Intergenic	novelGene_6110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACATTAAAAC	4738	False	NA	NA	False	NA	NA	NA	75927765	75927581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_75927600_75927800
PB_novel_03764_0	chr10	-	176	1	Intergenic	novelGene_6111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTGACACTT	NA	False	NA	NA	False	NA	NA	NA	76239233	76239057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_76239100_76239200
PB_novel_03783_0	chr10	+	175	1	Intergenic	novelGene_6112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	76783258	76783433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_76783300_76783400
PB_novel_03799_0	chr10	+	199	1	Intergenic	novelGene_6113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77179796	77179995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_77179800_77180000
PB_novel_03807_0	chr10	-	164	1	Intergenic	novelGene_6114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAACCAAAAAG	NA	False	NA	NA	False	NA	NA	NA	77329672	77329508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_77329500_77329700
PB_novel_03809_0	chr10	+	211	1	Intergenic	novelGene_6115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAATAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77362117	77362328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_77362100_77362300
PB_novel_03817_1	chr10	+	171	1	Intergenic	novelGene_6116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAATTTAAAAAAA	9647	False	NA	NA	False	NA	NA	NA	77467665	77467836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_77467700_77467800
PB_novel_03822_0	chr10	-	184	1	Intergenic	novelGene_6117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATAAATCCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	77659240	77659056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_77659100_77659200
PB_novel_03827_0	chr10	+	169	1	Intergenic	novelGene_6118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAACACACACACACAG	NA	False	NA	NA	False	NA	NA	NA	77796531	77796700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_77796500_77796700
PB_novel_03832_0	chr10	+	177	1	Intergenic	novelGene_6119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAAAAACAAAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	77851860	77852037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_77851900_77852000
PB_novel_03837_0	chr10	-	162	1	Intergenic	novelGene_6120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	78022041	78021879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_78021900_78022000
PB_novel_03839_0	chr10	+	1771	1	Antisense	novelGene_ENSMUSG00000001211.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAAACAACA	NA	False	NA	NA	False	NA	NA	NA	78185827	78187598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_78185800_78187600
PB_novel_03846_0	chr10	-	176	1	Intergenic	novelGene_6121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	78250915	78250739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_78250700_78250900
PB_novel_03852_0	chr10	+	180	1	Intergenic	novelGene_6122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAACCAGAGGAATGC	NA	False	NA	NA	False	NA	NA	NA	78335657	78335837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_78335700_78335800
PB_novel_03853_0	chr10	-	193	1	Intergenic	novelGene_6123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTACT	NA	False	NA	NA	False	NA	NA	NA	78338965	78338772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_78338800_78339000
PB_novel_03854_0	chr10	-	171	1	Intergenic	novelGene_6124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAATAAATCTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	78543968	78543797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_78543800_78544000
PB_novel_03864_0	chr10	+	167	1	Intergenic	novelGene_6125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTTTAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79402449	79402616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_79402400_79402600
PB_novel_03868_0	chr10	-	172	1	Intergenic	novelGene_6126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	79493169	79492997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_79493000_79493200
PB_novel_03873_0	chr10	-	172	1	Intergenic	novelGene_6127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	79562861	79562689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_79562700_79562900
PB_novel_03874_0	chr10	+	475	1	Intergenic	novelGene_6128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79595144	79595619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_79595100_79595600
PB_novel_03876_0	chr10	-	177	1	Intergenic	novelGene_6129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATTTGA	9733	False	NA	NA	False	NA	NA	NA	79628182	79628005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_79628000_79628200
PB_novel_03877_0	chr10	+	2134	1	NIC	ENSMUSG00000035863.15	novel	2651	9	NA	NA	29	-11937	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79629434	79631568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_79629400_79631600
PB_novel_03881_0	chr10	-	177	1	Intergenic	novelGene_6130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4806	False	NA	NA	False	NA	NA	NA	79706897	79706720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_79706700_79706900
PB_novel_03882_0	chr10	-	173	1	Intergenic	novelGene_6131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	79728692	79728519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_79728500_79728700
PB_novel_03884_0	chr10	+	177	1	Intergenic	novelGene_6132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATAATAATACATTTT	5223	False	NA	NA	False	NA	NA	NA	79760337	79760514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_79760300_79760500
PB_novel_03887_0	chr10	-	1620	1	Intergenic	novelGene_6133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79819664	79818044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_79818000_79819700
PB_novel_03890_0	chr10	+	182	1	Intergenic	novelGene_6134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAACAAAAAC	2954	False	NA	NA	False	NA	NA	NA	79877464	79877646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_79877500_79877600
PB_novel_03902_0	chr10	-	137	1	Intergenic	novelGene_6135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	9579	False	NA	NA	False	NA	NA	NA	80009272	80009135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80009100_80009300
PB_novel_03903_0	chr10	+	175	1	Intergenic	novelGene_6136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAAAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	80031302	80031477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80031300_80031500
PB_novel_03904_0	chr10	+	175	1	Intergenic	novelGene_6137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	80	False	NA	NA	False	NA	NA	NA	80047335	80047510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80047300_80047500
PB_novel_03908_0	chr10	+	207	1	Intergenic	novelGene_6138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	337	False	NA	NA	False	TTTAAA	-13	NA	80053525	80053732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80053500_80053700
PB_novel_03909_0	chr10	+	174	1	Intergenic	novelGene_6139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAATAATATACAT	NA	False	NA	NA	False	NA	NA	NA	80067053	80067227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80067100_80067200
PB_novel_03913_0	chr10	-	173	1	Intergenic	novelGene_6140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	9145	False	NA	NA	False	NA	NA	NA	80108843	80108670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80108700_80108800
PB_novel_03920_0	chr10	+	176	1	Intergenic	novelGene_6141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATCTTGA	2268	False	NA	NA	False	NA	NA	NA	80181989	80182165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80182000_80182200
PB_novel_03921_0	chr10	-	179	1	Intergenic	novelGene_6142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	80183031	80182852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80182900_80183000
PB_novel_03922_0	chr10	-	172	1	Intergenic	novelGene_6143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	80205035	80204863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80204900_80205000
PB_novel_03926_0	chr10	-	3703	1	Genic_Genomic	ENSMUSG00000020163.13	novel	NA	NA	NA	NA	802	735	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80241798	80238095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_80238100_80241800
PB_novel_03932_0	chr10	+	181	1	Intergenic	novelGene_6144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	80416328	80416509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80416300_80416500
PB_novel_03934_0	chr10	-	176	1	Intergenic	novelGene_6145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATCCAAAAACC	NA	False	NA	NA	False	NA	NA	NA	80441710	80441534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80441500_80441700
PB_novel_03939_0	chr10	-	171	1	Intergenic	novelGene_6146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	80462943	80462772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80462800_80462900
PB_novel_03945_0	chr10	+	176	1	Intergenic	novelGene_6147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAATAAC	NA	False	NA	NA	False	NA	NA	NA	80533067	80533243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80533100_80533200
PB_novel_03946_0	chr10	+	176	1	Intergenic	novelGene_6148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	80578950	80579126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80579000_80579100
PB_novel_03947_0	chr10	-	202	1	Intergenic	novelGene_6149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATTAGTCC	7778	False	NA	NA	False	NA	NA	NA	80579528	80579326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80579300_80579500
PB_novel_03949_0	chr10	-	158	1	Intergenic	novelGene_6150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATTAAAAAA	763	False	NA	NA	False	NA	NA	NA	80589547	80589389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80589400_80589500
PB_novel_03950_0	chr10	+	177	1	Intergenic	novelGene_6151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAGAGA	76	False	NA	NA	False	NA	NA	NA	80602984	80603161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80603000_80603200
PB_novel_03951_0	chr10	-	176	1	Intergenic	novelGene_6152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	80625903	80625727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80625700_80625900
PB_novel_03955_0	chr10	-	195	1	Intergenic	novelGene_6153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGGCT	5470	False	NA	NA	False	NA	NA	NA	80696491	80696296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80696300_80696500
PB_novel_03956_0	chr10	+	176	1	Intergenic	novelGene_6154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAATAAACA	NA	False	NA	NA	False	NA	NA	NA	80722800	80722976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80722800_80723000
PB_novel_03957_0	chr10	+	5484	1	Antisense	novelGene_ENSMUSG00000062075.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80743855	80749339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_80743900_80749300
PB_novel_03961_1	chr10	+	180	1	Intergenic	novelGene_6160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAATAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80952691	80952871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80952700_80952900
PB_novel_03962_0	chr10	-	179	1	Intergenic	novelGene_6155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAGAAAAA	8745	False	NA	NA	False	NA	NA	NA	80790131	80789952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80790000_80790100
PB_novel_03964_0	chr10	+	176	1	Intergenic	novelGene_6156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	263	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	80825914	80826090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80825900_80826100
PB_novel_03966_0	chr10	-	179	1	Intergenic	novelGene_6157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATATCTTAAAAAAAAAAA	1307	False	NA	NA	False	NA	NA	NA	80853896	80853717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80853700_80853900
PB_novel_03969_0	chr10	-	174	1	Intergenic	novelGene_6158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATTACGAAAA	9861	False	NA	NA	False	NA	NA	NA	80896571	80896397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_80896400_80896600
PB_novel_03976_0	chr10	+	174	1	Intergenic	novelGene_6159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATGTTAAAAAAAAAA	8872	False	NA	NA	False	NA	NA	NA	80949520	80949694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_80949500_80949700
PB_novel_03982_0	chr10	-	176	1	Intergenic	novelGene_6161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	6557	False	NA	NA	False	NA	NA	NA	81008362	81008186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_81008200_81008400
PB_novel_03984_2	chr10	-	1201	1	Antisense	novelGene_ENSMUSG00000034974.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	7181	False	NA	NA	False	NA	NA	NA	81026542	81025341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_81025300_81026500
PB_novel_03988_0	chr10	+	176	1	Intergenic	novelGene_6162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	81056728	81056904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_81056700_81056900
PB_novel_03991_0	chr10	+	171	1	Intergenic	novelGene_6163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAACTGTCTTGAA	NA	False	NA	NA	False	NA	NA	NA	81091949	81092120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_81091900_81092100
PB_novel_04000_0	chr10	+	186	1	Intergenic	novelGene_6164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAAAATCA	3771	False	NA	20	True	NA	NA	NA	81210828	81211014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_81210800_81211000
PB_novel_04006_0	chr10	+	166	1	Intergenic	novelGene_6165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATCTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81352529	81352695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_81352500_81352700
PB_novel_04007_0	chr10	-	176	1	Intergenic	novelGene_6166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7637	False	NA	NA	False	NA	NA	NA	81358201	81358025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_81358000_81358200
PB_novel_04014_0	chr10	-	176	1	Intergenic	novelGene_6167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	9155	False	NA	NA	False	NA	NA	NA	81490544	81490368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_81490400_81490500
PB_novel_04023_0	chr10	-	175	2	Intergenic	novelGene_6168	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	439	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAATAC	NA	False	NA	NA	False	NA	NA	NA	81879618	81873348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_81873475_81879569
PB_novel_04026_0	chr10	+	2626	1	NIC	ENSMUSG00000061371.8	novel	1647	2	NA	NA	1845	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	81897937	81900563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_+_81897900_81900600
PB_novel_04031_0	chr10	-	186	1	Intergenic	novelGene_6169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTATG	8460	False	NA	NA	False	NA	NA	NA	81977945	81977759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_81977800_81977900
PB_novel_04035_0	chr10	+	153	1	Intergenic	novelGene_6170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	6890	False	NA	NA	False	NA	NA	NA	82185225	82185378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_82185200_82185400
PB_novel_04036_0	chr10	+	4424	2	Intergenic	novelGene_6171	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	82195544	82200004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_82199478_82199513
PB_novel_04049_0	chr10	-	179	1	Intergenic	novelGene_6172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAATAAAAGAGTT	1842	False	NA	NA	False	NA	NA	NA	82688780	82688601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_82688600_82688800
PB_novel_04051_2	chr10	+	5976	2	NNC	ENSMUSG00000020250.12	novel	483	2	NA	NA	1	4281	intron_retention	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82695041	82701064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_82698637_82698683
PB_novel_04059_0	chr10	-	169	1	Intergenic	novelGene_6173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAAGAAAAGA	8451	False	NA	NA	False	NA	NA	NA	82762678	82762509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_82762500_82762700
PB_novel_04062_0	chr10	+	160	1	Intergenic	novelGene_6174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATCTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	83124154	83124314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_83124200_83124300
PB_novel_04063_0	chr10	+	171	1	Intergenic	novelGene_6175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGAGAAGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	83143816	83143987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_83143800_83144000
PB_novel_04070_0	chr10	-	175	1	Intergenic	novelGene_6176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	83442579	83442404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_83442400_83442600
PB_novel_04078_0	chr10	-	160	1	Intergenic	novelGene_6177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAATAATAATTTTTA	9805	False	NA	NA	False	NA	NA	NA	84388856	84388696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_84388700_84388900
PB_novel_04084_1	chr10	-	177	1	Intergenic	novelGene_6178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACAGTTCT	4210	False	NA	NA	False	NA	NA	NA	84523501	84523324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_84523300_84523500
PB_novel_04089_0	chr10	+	173	1	Intergenic	novelGene_6179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAGAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	84719300	84719473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_84719300_84719500
PB_novel_04107_1	chr10	+	154	1	Intergenic	novelGene_6180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAATAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	85521572	85521726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_85521600_85521700
PB_novel_04109_0	chr10	-	3611	1	Antisense	novelGene_ENSMUSG00000001785.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85716474	85712863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_85712900_85716500
PB_novel_04116_0	chr10	+	1694	1	Antisense	novelGene_ENSMUSG00000020048.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAGTAAAAAAAAAAAAAA	NA	False	NA	NA	False	TATAAA	-7	NA	86536402	86538096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_86536400_86538100
PB_novel_04118_0	chr10	-	259	1	Intergenic	novelGene_6181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAAAATTGT	NA	False	NA	NA	False	NA	NA	NA	86567845	86567586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_86567600_86567800
PB_novel_04126_0	chr10	-	177	1	Intergenic	novelGene_6182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAATGTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87456959	87456782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_87456800_87457000
PB_novel_04128_0	chr10	-	173	1	Intergenic	novelGene_6183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	2751	False	NA	NA	False	NA	NA	NA	87912586	87912413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_87912400_87912600
PB_novel_04131_0	chr10	-	5473	1	FSM	ENSMUSG00000088843.4	ENSMUST00000158218.4	115	1	-2587	-2771	-2587	2771	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-26	NA	88003522	87998049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_-_87998000_88003500
PB_novel_04135_0	chr10	+	175	1	Intergenic	novelGene_6184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAATAAAAATATCAA	NA	False	NA	NA	False	NA	NA	NA	88199201	88199376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_88199200_88199400
PB_novel_04143_0	chr10	-	174	1	Intergenic	novelGene_6185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAACCACTGGAATT	6701	False	NA	NA	False	NA	NA	NA	88472788	88472614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_88472600_88472800
PB_novel_04145_3	chr10	-	177	1	Intergenic	novelGene_6187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1466	False	NA	NA	False	NA	NA	NA	88582291	88582114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_88582100_88582300
PB_novel_04151_0	chr10	-	160	1	Intergenic	novelGene_6186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAATAAATATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	88524182	88524022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_88524000_88524200
PB_novel_04152_1	chr10	+	1903	2	NNC	ENSMUSG00000111919.2	novel	326	2	NA	NA	-185	3010	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAAAAGAAACCCTA	NA	False	NA	NA	False	NA	NA	NA	88540271	88543947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr10_+_88540492_88542264
PB_novel_04157_0	chr10	+	169	1	Intergenic	novelGene_6188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCTTTAAAAACTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88623634	88623803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_88623600_88623800
PB_novel_04170_0	chr10	+	171	1	Intergenic	novelGene_6189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATCTTTAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	89571515	89571686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_89571500_89571700
PB_novel_04174_0	chr10	+	177	1	Intergenic	novelGene_6190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	89637663	89637840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_89637700_89637800
PB_novel_04175_1	chr10	+	176	1	Intergenic	novelGene_6191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAATAG	4072	False	NA	NA	False	NA	NA	NA	89690465	89690641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_89690500_89690600
PB_novel_04176_0	chr10	-	155	1	Intergenic	novelGene_6192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCTTTTTTAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	89707798	89707643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_89707600_89707800
PB_novel_04177_0	chr10	+	322	1	Intergenic	novelGene_6193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-11	NA	89714111	89714433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_89714100_89714400
PB_novel_04183_0	chr10	+	175	1	Intergenic	novelGene_6194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTATAATGAAATAAAGGAT	NA	False	NA	NA	False	NA	NA	NA	90814849	90815024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_90814800_90815000
PB_novel_04191_3	chr10	-	176	1	Intergenic	novelGene_6196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTTTTA	NA	False	NA	NA	False	NA	NA	NA	90978419	90978243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_90978200_90978400
PB_novel_04192_0	chr10	-	177	1	Intergenic	novelGene_6195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATGTGC	NA	False	NA	NA	False	NA	NA	NA	90964518	90964341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_90964300_90964500
PB_novel_04198_0	chr10	+	1375	1	Antisense	novelGene_ENSMUSG00000019961.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-18	NA	91005127	91006502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_91005100_91006500
PB_novel_04206_0	chr10	-	162	1	Intergenic	novelGene_6197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAGTAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	92124570	92124408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_92124400_92124600
PB_novel_04208_0	chr10	+	152	1	Intergenic	novelGene_6198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATAAATAAATCTTTT	NA	False	NA	NA	False	NA	NA	NA	92937005	92937157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_92937000_92937200
PB_novel_04211_0	chr10	+	176	1	FSM	ENSMUSG00000089214.3	ENSMUST00000158589.3	119	1	101	-158	101	158	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TACAAAAAAAAAAAAAATTC	NA	False	NA	NA	False	NA	NA	NA	92998747	92998923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_92998700_92998900
PB_novel_04216_0	chr10	+	159	1	Intergenic	novelGene_6199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAACAAACAAATTTT	NA	False	NA	NA	False	NA	NA	NA	93220589	93220748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_93220600_93220700
PB_novel_04217_0	chr10	+	176	1	Intergenic	novelGene_6200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	7262	False	NA	NA	False	NA	NA	NA	93268760	93268936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_93268800_93268900
PB_novel_04224_0	chr10	+	175	1	Intergenic	novelGene_6201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAAGAAAAGTA	222	False	NA	NA	False	NA	NA	NA	93596203	93596378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_93596200_93596400
PB_novel_04228_0	chr10	+	171	1	Intergenic	novelGene_6202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATAAATAAATAAA	1643	False	NA	NA	False	NA	NA	NA	93642836	93643007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_93642800_93643000
PB_novel_04245_0	chr10	-	179	1	Intergenic	novelGene_6203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	93955783	93955604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_93955600_93955800
PB_novel_04246_1	chr10	-	176	1	Intergenic	novelGene_6204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	94020621	94020445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_94020400_94020600
PB_novel_04251_0	chr10	-	173	1	Intergenic	novelGene_6205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAACCCTAATCTT	NA	False	NA	NA	False	NA	NA	NA	94403150	94402977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_94403000_94403200
PB_novel_04253_0	chr10	+	165	1	Intergenic	novelGene_6206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAAAAAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	94513756	94513921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_94513800_94513900
PB_novel_04260_0	chr10	-	179	1	Intergenic	novelGene_6207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95056392	95056213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_95056200_95056400
PB_novel_04265_0	chr10	+	419	1	Intergenic	novelGene_6208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95141368	95141787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_95141400_95141800
PB_novel_04268_0	chr10	-	1445	1	NIC	ENSMUSG00000045867.11	novel	1613	2	NA	NA	76	303	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAACAACAACAACAACAAAA	NA	False	NA	NA	False	NA	NA	NA	95158751	95157306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_95157300_95158800
PB_novel_04271_0	chr10	+	131	1	Intergenic	novelGene_6209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACCAAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95173527	95173658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_95173500_95173700
PB_novel_04275_0	chr10	-	187	1	Intergenic	novelGene_6210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTTAAAAAAAAAGAAAGA	6720	False	NA	NA	False	NA	NA	NA	95225987	95225800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_95225800_95226000
PB_novel_04278_1	chr10	+	177	1	Intergenic	novelGene_6211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGATGATCAC	NA	False	NA	NA	False	NA	NA	NA	95264816	95264993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_95264800_95265000
PB_novel_04282_0	chr10	-	330	1	Intergenic	novelGene_6212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGACCAAAAAAAAAAAAA	5652	False	NA	NA	False	NA	NA	NA	95292987	95292657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_95292700_95293000
PB_novel_04283_0	chr10	-	2734	1	NIC	ENSMUSG00000112261.2	novel	660	3	NA	NA	26	-13149	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAGAA	1579	False	NA	NA	False	NA	NA	NA	95297060	95294326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_95294300_95297100
PB_novel_04286_0	chr10	-	176	1	Intergenic	novelGene_6213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95341114	95340938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_95340900_95341100
PB_novel_04287_0	chr10	-	178	1	Intergenic	novelGene_6214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	95360247	95360069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_95360100_95360200
PB_novel_04291_0	chr10	-	180	1	Intergenic	novelGene_6215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGGAGAAATT	NA	False	NA	NA	False	NA	NA	NA	95568873	95568693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_95568700_95568900
PB_novel_04293_0	chr10	-	171	1	Intergenic	novelGene_6216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95690100	95689929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_95689900_95690100
PB_novel_04296_0	chr10	+	181	1	Intergenic	novelGene_6217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATAGAA	NA	False	NA	NA	False	NA	NA	NA	96137307	96137488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_96137300_96137500
PB_novel_04312_0	chr10	-	171	1	Intergenic	novelGene_6218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAGAAGAAGAAGAGGAA	NA	False	NA	NA	False	NA	NA	NA	98745484	98745313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_98745300_98745500
PB_novel_04325_0	chr10	-	6618	2	Antisense	novelGene_ENSMUSG00000113032.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99576067	99569243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_99575309_99575514
PB_novel_04330_0	chr10	-	2576	1	NIC	ENSMUSG00000036676.15	novel	5993	14	NA	NA	7	-6768	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100323181	100320605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_100320600_100323200
PB_novel_04335_0	chr10	-	174	1	Intergenic	novelGene_6219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAATTAGAAAACTA	NA	False	NA	NA	False	NA	NA	NA	102255464	102255290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_102255300_102255500
PB_novel_04336_0	chr10	+	183	1	Intergenic	novelGene_6220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAAAGACTTT	NA	False	NA	NA	False	NA	NA	NA	103249824	103250007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_103249800_103250000
PB_novel_04353_0	chr10	-	181	1	Intergenic	novelGene_6222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	669	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108142619	108142438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_108142400_108142600
PB_novel_04356_0	chr10	-	170	1	Intergenic	novelGene_6221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGATATATCTGGAAAG	NA	False	NA	NA	False	NA	NA	NA	108140948	108140778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_108140800_108140900
PB_novel_04359_0	chr10	+	176	1	Intergenic	novelGene_6223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	108229452	108229628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_108229500_108229600
PB_novel_04360_0	chr10	-	4632	1	Intergenic	novelGene_6224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	108237915	108233283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_108233300_108237900
PB_novel_04361_0	chr10	-	181	1	Intergenic	novelGene_6225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	108248411	108248230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_108248200_108248400
PB_novel_04366_0	chr10	-	174	1	Intergenic	novelGene_6226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAATTAACAAAGCT	NA	False	NA	NA	False	NA	NA	NA	108317540	108317366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_108317400_108317500
PB_novel_04374_0	chr10	-	227	1	Intergenic	novelGene_6227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-12	NA	111072030	111071803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_111071800_111072000
PB_novel_04375_0	chr10	-	173	1	Intergenic	novelGene_6228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAGCAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	111092961	111092788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_111092800_111093000
PB_novel_04378_0	chr10	-	152	1	Intergenic	novelGene_6229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	111246579	111246427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_111246400_111246600
PB_novel_04380_0	chr10	+	169	1	Intergenic	novelGene_6230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4289	False	NA	NA	False	NA	NA	NA	111489641	111489810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_111489600_111489800
PB_novel_04382_0	chr10	-	177	1	Intergenic	novelGene_6231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAGAAGAAGAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	111775606	111775429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_111775400_111775600
PB_novel_04389_0	chr10	-	176	1	Intergenic	novelGene_6232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	113831169	113830993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_113831000_113831200
PB_novel_04392_0	chr10	+	172	1	Intergenic	novelGene_6233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	115013104	115013276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_115013100_115013300
PB_novel_04400_1	chr10	-	2744	5	Antisense	novelGene_ENSMUSG00000112822.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115239225	115224836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_115226969_115233906_115233971_115236615_115236817_115237511_115237738_115239104
PB_novel_04401_0	chr10	-	157	1	Intergenic	novelGene_6234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	115227886	115227729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_115227700_115227900
PB_novel_04402_0	chr10	-	1950	1	Antisense	novelGene_ENSMUSG00000112822.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115232460	115230510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_115230500_115232500
PB_novel_04405_0	chr10	-	182	1	Intergenic	novelGene_6235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTTTTTAAGACT	3246	False	NA	NA	False	NA	NA	NA	115312374	115312192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_115312200_115312400
PB_novel_04419_0	chr10	+	859	1	Intergenic	novelGene_6236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	116397482	116398341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_116397500_116398300
PB_novel_04420_0	chr10	-	175	1	Intergenic	novelGene_6237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGTGTACAA	NA	False	NA	NA	False	NA	NA	NA	116402565	116402390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_116402400_116402600
PB_novel_04425_0	chr10	+	173	1	Intergenic	novelGene_6238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAATAA	8991	False	NA	NA	False	NA	NA	NA	116817795	116817968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_116817800_116818000
PB_novel_04432_0	chr10	-	176	1	Intergenic	novelGene_6239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAGAAAGAAAGAAG	9547	False	NA	NA	False	NA	NA	NA	116922312	116922136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_116922100_116922300
PB_novel_04433_0	chr10	-	159	1	Intergenic	novelGene_6240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAATAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116933172	116933013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_116933000_116933200
PB_novel_04444_0	chr10	-	3518	1	NIC	ENSMUSG00000055531.13	novel	6526	10	NA	NA	20	-7255	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	4494	False	NA	NA	False	NA	NA	NA	117212855	117209337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr10_-_117209300_117212900
PB_novel_04450_0	chr10	-	176	1	Intergenic	novelGene_6241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	117266983	117266807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_117266800_117267000
PB_novel_04456_0	chr10	-	163	1	Intergenic	novelGene_6242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATATTAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	117421527	117421364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_117421400_117421500
PB_novel_04460_0	chr10	-	169	1	Intergenic	novelGene_6243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTTTAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117494323	117494154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_117494200_117494300
PB_novel_04468_0	chr10	-	170	1	Intergenic	novelGene_6244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117599606	117599436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_117599400_117599600
PB_novel_04469_0	chr10	+	177	1	Intergenic	novelGene_6245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117607947	117608124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_117607900_117608100
PB_novel_04475_0	chr10	+	144	1	Intergenic	novelGene_6246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATTTTTATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117693596	117693740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_117693600_117693700
PB_novel_04479_0	chr10	+	166	1	Intergenic	novelGene_6247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAGAAGAAAACA	NA	False	NA	NA	False	NA	NA	NA	118932747	118932913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_118932700_118932900
PB_novel_04480_0	chr10	+	174	1	Intergenic	novelGene_6248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAGACTCAC	NA	False	NA	NA	False	NA	NA	NA	118959144	118959318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_118959100_118959300
PB_novel_04481_1	chr10	-	175	1	Intergenic	novelGene_6249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	119016827	119016652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_119016700_119016800
PB_novel_04483_0	chr10	-	172	1	Intergenic	novelGene_6250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119084745	119084573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_119084600_119084700
PB_novel_04484_0	chr10	+	208	1	Intergenic	novelGene_6251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	119089099	119089307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_119089100_119089300
PB_novel_04496_0	chr10	+	182	1	Intergenic	novelGene_6252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAACAAAAAA	4575	False	NA	NA	False	NA	NA	NA	119997542	119997724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_119997500_119997700
PB_novel_04502_0	chr10	+	177	1	Intergenic	novelGene_6253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120039857	120040034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_120039900_120040000
PB_novel_04507_0	chr10	-	175	1	Intergenic	novelGene_6254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAATTAGCC	NA	False	NA	NA	False	NA	NA	NA	120102314	120102139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_120102100_120102300
PB_novel_04516_0	chr10	+	174	1	Intergenic	novelGene_6255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAATTGCCACAGA	NA	False	NA	NA	False	NA	NA	NA	120281769	120281943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_120281800_120281900
PB_novel_04517_0	chr10	+	176	1	Intergenic	novelGene_6256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAATA	NA	False	NA	NA	False	NA	NA	NA	120286280	120286456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_120286300_120286500
PB_novel_04519_0	chr10	-	174	1	Intergenic	novelGene_6257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTTAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	120323150	120322976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_120323000_120323200
PB_novel_04520_0	chr10	-	174	1	Intergenic	novelGene_6258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	120338623	120338449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_120338400_120338600
PB_novel_04521_0	chr10	-	168	1	Intergenic	novelGene_6259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATATTTT	NA	False	NA	NA	False	NA	NA	NA	120345695	120345527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_120345500_120345700
PB_novel_04522_0	chr10	-	175	1	Intergenic	novelGene_6260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAACAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	120348691	120348516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_120348500_120348700
PB_novel_04529_0	chr10	-	176	1	Intergenic	novelGene_6261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	120447570	120447394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_120447400_120447600
PB_novel_04539_0	chr10	+	175	1	Intergenic	novelGene_6262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	692	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAGAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	120658244	120658419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_120658200_120658400
PB_novel_04540_0	chr10	-	169	1	Intergenic	novelGene_6263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	120692615	120692446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_120692400_120692600
PB_novel_04542_0	chr10	-	177	1	Intergenic	novelGene_6264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9882	False	NA	NA	False	NA	NA	NA	120772174	120771997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_120772000_120772200
PB_novel_04544_0	chr10	+	155	1	Intergenic	novelGene_6265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAATAAACTTTAA	NA	False	NA	NA	False	NA	NA	NA	120804070	120804225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_120804100_120804200
PB_novel_04550_0	chr10	-	173	1	Intergenic	novelGene_6266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAATAAATCAAAT	NA	False	NA	NA	False	NA	NA	NA	120861259	120861086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_120861100_120861300
PB_novel_04556_0	chr10	-	177	1	Intergenic	novelGene_6269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAGAAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	121351332	121351155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_121351200_121351300
PB_novel_04562_0	chr10	+	167	1	Intergenic	novelGene_6267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	121192879	121193046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_121192900_121193000
PB_novel_04568_0	chr10	+	168	1	Intergenic	novelGene_6268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	121327733	121327901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_121327700_121327900
PB_novel_04580_0	chr10	-	168	1	Intergenic	novelGene_6270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	121532096	121531928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_121531900_121532100
PB_novel_04585_0	chr10	-	175	1	Intergenic	novelGene_6271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	121746690	121746515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_121746500_121746700
PB_novel_04588_0	chr10	+	158	1	Intergenic	novelGene_6272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATACATAAAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	121873377	121873535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_121873400_121873500
PB_novel_04598_0	chr10	+	176	1	Intergenic	novelGene_6273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAACAAAACTATTCAA	NA	False	NA	NA	False	NA	NA	NA	122782688	122782864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_122782700_122782900
PB_novel_04599_0	chr10	-	177	1	Intergenic	novelGene_6274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122790085	122789908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_122789900_122790100
PB_novel_04606_0	chr10	+	163	1	Intergenic	novelGene_6275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122962980	122963143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_122963000_122963100
PB_novel_04607_2	chr10	+	4179	2	Antisense	novelGene_ENSMUSG00000020124.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123001399	123008305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_123004278_123007004
PB_novel_04608_0	chr10	+	3462	1	Antisense	novelGene_ENSMUSG00000020124.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123004843	123008305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_123004800_123008300
PB_novel_04618_0	chr10	+	173	1	Intergenic	novelGene_6276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	126490065	126490238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_126490100_126490200
PB_novel_04623_0	chr10	+	172	1	Intergenic	novelGene_6277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTAAAGGAAAATAA	NA	False	NA	NA	False	NA	NA	NA	126712006	126712178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_126712000_126712200
PB_novel_04628_0	chr10	-	179	1	Intergenic	novelGene_6278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATTTTTTAAAAATA	NA	False	NA	NA	False	NA	NA	NA	126757736	126757557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_126757600_126757700
PB_novel_04632_0	chr10	+	174	1	Intergenic	novelGene_6279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAATAAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	126789703	126789877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_126789700_126789900
PB_novel_04633_0	chr10	-	202	1	Intergenic	novelGene_6280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAGTAAGAAGGTG	NA	False	NA	NA	False	CATAAA	-7	NA	126790142	126789940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_126789900_126790100
PB_novel_04641_0	chr10	+	195	1	Intergenic	novelGene_6281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCTTAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	126909054	126909249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_126909100_126909200
PB_novel_04644_0	chr10	-	175	1	Intergenic	novelGene_6282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAGAAAAAAAAAACACCT	NA	False	NA	NA	False	NA	NA	NA	126951207	126951032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_126951000_126951200
PB_novel_04665_0	chr10	-	175	1	Intergenic	novelGene_6283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACCA	8539	False	NA	NA	False	NA	NA	NA	127274035	127273860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_127273900_127274000
PB_novel_04669_0	chr10	+	175	1	Intergenic	novelGene_6284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	127315468	127315643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_127315500_127315600
PB_novel_04671_0	chr10	-	173	1	Intergenic	novelGene_6285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127406802	127406629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_127406600_127406800
PB_novel_04673_0	chr10	-	177	1	Intergenic	novelGene_6286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATCTATATTTA	NA	False	NA	NA	False	NA	NA	NA	127408156	127407979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_127408000_127408200
PB_novel_04677_0	chr10	+	170	1	Intergenic	novelGene_6287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127465550	127465720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_127465600_127465700
PB_novel_04681_0	chr10	+	177	1	Intergenic	novelGene_6288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATGAATATACAGG	4612	False	NA	NA	False	NA	NA	NA	127492433	127492610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_127492400_127492600
PB_novel_04683_0	chr10	-	173	1	Intergenic	novelGene_6289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAAGCTTTTAAATA	6047	False	NA	NA	False	NA	NA	NA	127519806	127519633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_127519600_127519800
PB_novel_04688_0	chr10	+	171	1	Intergenic	novelGene_6290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	127829152	127829323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_127829200_127829300
PB_novel_04691_0	chr10	+	175	1	Intergenic	novelGene_6291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATCATTACACC	3428	False	NA	NA	False	NA	NA	NA	127853484	127853659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_127853500_127853700
PB_novel_04693_0	chr10	-	157	1	Intergenic	novelGene_6292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATCTAAAAAC	NA	False	NA	NA	False	NA	NA	NA	127854827	127854670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_127854700_127854800
PB_novel_04693_1	chr10	-	173	2	Antisense	novelGene_ENSMUSG00000025395.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TATAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	127854827	127854437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_127854486_127854702
PB_novel_04696_0	chr10	+	165	1	Intergenic	novelGene_6293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	7924	False	NA	NA	False	NA	NA	NA	127887242	127887407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_127887200_127887400
PB_novel_04697_0	chr10	-	138	1	Intergenic	novelGene_6294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTTAAAAAATTAAA	572	False	NA	NA	False	NA	NA	NA	127888147	127888009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_127888000_127888100
PB_novel_04702_0	chr10	-	950	1	Intergenic	novelGene_6295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127900342	127899392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_127899400_127900300
PB_novel_04704_0	chr10	+	176	1	Intergenic	novelGene_6296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAGAAAAGAAACAAGGT	NA	False	NA	NA	False	NA	NA	NA	127916494	127916670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_127916500_127916700
PB_novel_04706_2	chr10	-	178	1	Intergenic	novelGene_6297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	347	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	127935686	127935508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_127935500_127935700
PB_novel_04712_0	chr10	-	175	1	Intergenic	novelGene_6298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	127941575	127941400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_127941400_127941600
PB_novel_04716_0	chr10	-	169	1	Intergenic	novelGene_6299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	127972872	127972703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_127972700_127972900
PB_novel_04717_0	chr10	-	162	1	Intergenic	novelGene_6300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAATAAATAAATCTAA	5875	False	NA	NA	False	NA	NA	NA	128001733	128001571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_128001600_128001700
PB_novel_04721_0	chr10	+	179	1	Intergenic	novelGene_6301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAACAATAAAAATTA	5553	False	NA	NA	False	NA	NA	NA	128020794	128020973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_128020800_128021000
PB_novel_04723_0	chr10	-	167	1	Intergenic	novelGene_6302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	128028101	128027934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_128027900_128028100
PB_novel_04726_0	chr10	+	190	1	Intergenic	novelGene_6303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAGGGAAGAAAAAAGA	2520	False	NA	NA	False	NA	NA	NA	128054825	128055015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_128054800_128055000
PB_novel_04729_2	chr10	-	171	1	Intergenic	novelGene_6304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATATTTAAAAATGAA	NA	False	NA	NA	False	NA	NA	NA	128096385	128096214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_128096200_128096400
PB_novel_04730_0	chr10	-	175	1	Antisense	novelGene_ENSMUSG00000039994.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAGAAACACTGCAG	4119	False	NA	NA	False	NA	NA	NA	128078855	128078680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_-_128078700_128078900
PB_novel_04732_0	chr10	+	177	1	Intergenic	novelGene_6305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	3737	False	NA	NA	False	NA	NA	NA	128103179	128103356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_128103200_128103400
PB_novel_04737_0	chr10	+	176	1	Intergenic	novelGene_6306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	228	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	128168223	128168399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_128168200_128168400
PB_novel_04738_0	chr10	-	172	1	Intergenic	novelGene_6307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7979	False	NA	NA	False	NA	NA	NA	128168655	128168483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_128168500_128168700
PB_novel_04739_0	chr10	-	180	1	Intergenic	novelGene_6308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGAAAAAAAAAAAAGAAAA	7731	False	NA	NA	False	NA	NA	NA	128168903	128168723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_128168700_128168900
PB_novel_04747_0	chr10	+	338	1	Antisense	novelGene_ENSMUSG00000039914.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATCTTAAAAAAAAAAAA	5051	False	NA	NA	False	NA	NA	NA	128199789	128200127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr10_+_128199800_128200100
PB_novel_04749_0	chr10	-	176	1	Intergenic	novelGene_6309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTTCACTGA	2999	False	NA	NA	False	NA	NA	NA	128208806	128208630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_128208600_128208800
PB_novel_04762_0	chr10	-	137	1	Intergenic	novelGene_6310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAAATAAAAAAAT	2316	False	NA	NA	False	NA	NA	NA	128367742	128367605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_128367600_128367700
PB_novel_04765_0	chr10	+	170	1	Intergenic	novelGene_6311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATACAAAGATGC	147	False	NA	NA	False	NA	NA	NA	128376637	128376807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_128376600_128376800
PB_novel_04774_0	chr10	+	175	1	Intergenic	novelGene_6312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAACCAAAAGAACCAG	5212	False	NA	NA	False	NA	NA	NA	128464960	128465135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_128465000_128465100
PB_novel_04777_0	chr10	+	175	1	Intergenic	novelGene_6313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	421	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGC	1857	False	NA	NA	False	NA	NA	NA	128490958	128491133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_128491000_128491100
PB_novel_04779_0	chr10	-	1132	1	Genic_Genomic	ENSMUSG00000000711.4	novel	NA	NA	NA	NA	-20	-13350	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128532153	128531021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr10_-_128531000_128532200
PB_novel_04781_0	chr10	-	177	1	Intergenic	novelGene_6314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9407	False	NA	NA	False	NA	NA	NA	128553482	128553305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_128553300_128553500
PB_novel_04783_0	chr10	-	155	1	Intergenic	novelGene_6315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8449	False	NA	NA	False	NA	NA	NA	128575329	128575174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_128575200_128575300
PB_novel_04794_0	chr10	+	178	1	Intergenic	novelGene_6316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	128664200	128664378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_128664200_128664400
PB_novel_04801_0	chr10	-	208	1	Intergenic	novelGene_6317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAC	9857	False	NA	NA	False	NA	NA	NA	128734416	128734208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_128734200_128734400
PB_novel_04803_0	chr10	-	178	1	Intergenic	novelGene_6318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAGAAAAAGA	8444	False	NA	NA	False	NA	NA	NA	128739288	128739110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_128739100_128739300
PB_novel_04814_0	chr10	+	1885	1	FSM	ENSMUSG00000040540.7	ENSMUST00000075147.6	811	1	-252	-822	-252	822	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGAGG	NA	False	NA	NA	False	AAGAAA	-13	NA	130248115	130250000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr10_+_130248100_130250000
PB_novel_04816_0	chr10	+	177	1	Intergenic	novelGene_6319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAATAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	130283389	130283566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_130283400_130283600
PB_novel_04817_0	chr10	+	177	1	Intergenic	novelGene_6320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2138	False	NA	NA	False	NA	NA	NA	130365820	130365997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_+_130365800_130366000
PB_novel_04824_1	chr11	+	173	1	Intergenic	novelGene_6966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAATTGTAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	3122089	3122262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_3122100_3122300
PB_novel_04825_0	chr11	+	134	1	Intergenic	novelGene_6967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3123800	3123934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_3123800_3123900
PB_novel_04826_0	chr11	+	128	1	Antisense	novelGene_ENSMUSG00000023764.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAATAAAAAAAATTT	4585	False	NA	-14	True	NA	NA	NA	3135689	3135817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_3135700_3135800
PB_novel_04827_0	chr11	+	179	1	Intergenic	novelGene_6968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	3147312	3147491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_3147300_3147500
PB_novel_04836_0	chr11	+	153	1	Intergenic	novelGene_6969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAATAAATATTTTTT	168	False	NA	NA	False	NA	NA	NA	3204148	3204301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_3204100_3204300
PB_novel_04837_0	chr11	+	158	1	Intergenic	novelGene_6970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAACAAAACGAA	7079	False	NA	NA	False	NA	NA	NA	3211059	3211217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_3211100_3211200
PB_novel_04839_0	chr11	-	2547	1	Antisense	novelGene_ENSMUSG00000084941.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	4159	False	NA	NA	False	NA	NA	NA	3262241	3259694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_3259700_3262200
PB_novel_04843_0	chr11	+	195	1	Intergenic	novelGene_6971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAACCAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3277889	3278084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_3277900_3278100
PB_novel_04856_0	chr11	-	186	1	Intergenic	novelGene_6972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAACA	732	False	NA	NA	False	NA	NA	NA	3355451	3355265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_3355300_3355500
PB_novel_04858_0	chr11	+	153	1	Intergenic	novelGene_6973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGTGTTAGAAAA	NA	False	NA	NA	False	NA	NA	NA	3387467	3387620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_3387500_3387600
PB_novel_04862_0	chr11	-	176	1	Intergenic	novelGene_6974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	3431553	3431377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_3431400_3431600
PB_novel_04866_0	chr11	+	178	1	Intergenic	novelGene_6975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	3566504	3566682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_3566500_3566700
PB_novel_04869_0	chr11	+	1360	2	Antisense	novelGene_ENSMUSG00002075685.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAACAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	3595088	3597482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_3595528_3596561
PB_novel_04870_0	chr11	+	1960	1	Antisense	novelGene_ENSMUSG00002076847.1_AS_novelGene_ENSMUSG00000056579.19_AS_novelGene_ENSMUSG00002075685.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAACAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	3595522	3597482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_3595500_3597500
PB_novel_04872_0	chr11	-	371	1	Intergenic	novelGene_6976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	3603617	3603246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_3603200_3603600
PB_novel_04879_0	chr11	+	175	1	Intergenic	novelGene_6977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3776950	3777125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_3777000_3777100
PB_novel_04884_0	chr11	-	175	1	Intergenic	novelGene_6978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8403	False	NA	NA	False	NA	NA	NA	3919116	3918941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_3918900_3919100
PB_novel_04886_0	chr11	-	174	1	Intergenic	novelGene_6979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAATAATAACAATT	NA	False	NA	NA	False	NA	NA	NA	3987304	3987130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_3987100_3987300
PB_novel_04891_0	chr11	+	177	1	Intergenic	novelGene_6980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	4063851	4064028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4063900_4064000
PB_novel_04899_0	chr11	-	182	1	Intergenic	novelGene_6981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GATTAAAAAAAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	4182321	4182139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_4182100_4182300
PB_novel_04901_0	chr11	-	180	1	Intergenic	novelGene_6982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	4274145	4273965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_4274000_4274100
PB_novel_04903_0	chr11	+	172	1	Intergenic	novelGene_6983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAGAAC	9735	False	NA	NA	False	NA	NA	NA	4276405	4276577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4276400_4276600
PB_novel_04907_0	chr11	+	169	1	Intergenic	novelGene_6984	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAAAATAA	9045	False	NA	NA	False	NA	NA	NA	4325207	4325376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4325200_4325400
PB_novel_04910_0	chr11	+	2396	1	Intergenic	novelGene_6985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4337466	4339862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4337500_4339900
PB_novel_04916_0	chr11	-	2154	1	Genic_Genomic	ENSMUSG00000020419.12	novel	NA	NA	NA	NA	-37	-11675	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4391142	4388988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_4389000_4391100
PB_novel_04919_0	chr11	-	177	1	Intergenic	novelGene_6986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	7004	False	NA	NA	False	NA	NA	NA	4420280	4420103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_4420100_4420300
PB_novel_04920_0	chr11	-	181	1	Intergenic	novelGene_6987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAAATCTT	7831	False	NA	NA	False	NA	NA	NA	4456466	4456285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_4456300_4456500
PB_novel_04921_0	chr11	-	167	1	Intergenic	novelGene_6988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	2931	False	NA	NA	False	NA	NA	NA	4461366	4461199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_4461200_4461400
PB_novel_04922_0	chr11	+	176	1	Intergenic	novelGene_6989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAATATGTTC	NA	False	NA	NA	False	NA	NA	NA	4468441	4468617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4468400_4468600
PB_novel_04922_1	chr11	+	165	2	Intergenic	novelGene_6990	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATTAAAAAAATAAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	4468445	4530192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4468586_4530167
PB_novel_04926_1	chr11	+	187	1	Intergenic	novelGene_6991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4517525	4517712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4517500_4517700
PB_novel_04929_0	chr11	+	175	1	Intergenic	novelGene_6992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4537932	4538107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4537900_4538100
PB_novel_04934_0	chr11	+	170	2	Intergenic	novelGene_6993	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	115	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGTACTG	NA	False	NA	NA	False	NA	NA	NA	4627775	4827157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4627827_4827038
PB_novel_04934_2	chr11	+	169	1	Intergenic	novelGene_7000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGTACTG	NA	False	NA	NA	False	NA	NA	NA	4826988	4827157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4827000_4827200
PB_novel_04935_0	chr11	+	171	1	Intergenic	novelGene_6994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGACAA	NA	False	NA	NA	False	NA	NA	NA	4627777	4627948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4627800_4627900
PB_novel_04939_0	chr11	+	176	1	Intergenic	novelGene_6996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	5183	False	NA	NA	False	NA	NA	NA	4709855	4710031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4709900_4710000
PB_novel_04940_0	chr11	+	175	1	Intergenic	novelGene_6995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	4648698	4648873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4648700_4648900
PB_novel_04946_0	chr11	+	154	1	Intergenic	novelGene_6997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATTTTTTAAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	4761684	4761838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4761700_4761800
PB_novel_04950_0	chr11	-	173	1	Intergenic	novelGene_6998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTAAAAAAAGAAACCAC	3769	False	NA	NA	False	NA	NA	NA	4812890	4812717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_4812700_4812900
PB_novel_04951_0	chr11	-	172	1	Intergenic	novelGene_6999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAACCAAAAGG	NA	False	NA	NA	False	NA	NA	NA	4819675	4819503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_4819500_4819700
PB_novel_04958_0	chr11	-	171	1	Intergenic	novelGene_7001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4857183	4857012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_4857000_4857200
PB_novel_04962_0	chr11	+	176	1	Intergenic	novelGene_7002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATCCCATC	8654	False	NA	NA	False	NA	NA	NA	4995611	4995787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_4995600_4995800
PB_novel_04966_0	chr11	+	172	1	Intergenic	novelGene_7003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5026543	5026715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5026500_5026700
PB_novel_04967_0	chr11	+	175	1	Intergenic	novelGene_7004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAGAGAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	5027571	5027746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5027600_5027700
PB_novel_04970_0	chr11	+	176	1	Intergenic	novelGene_7005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5396	False	NA	NA	False	NA	NA	NA	5044554	5044730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5044600_5044700
PB_novel_04973_0	chr11	+	173	1	Intergenic	novelGene_7006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAACAAAAACAAGAA	NA	False	NA	NA	False	NA	NA	NA	5072468	5072641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5072500_5072600
PB_novel_04974_0	chr11	-	176	1	Intergenic	novelGene_7007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAGAGAGAGAGG	2454	False	NA	NA	False	NA	NA	NA	5077343	5077167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_5077200_5077300
PB_novel_04977_0	chr11	+	1475	1	Antisense	novelGene_ENSMUSG00000041961.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5226089	5227564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_5226100_5227600
PB_novel_04987_0	chr11	+	182	1	Intergenic	novelGene_7008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATATTTGGTTA	NA	False	NA	NA	False	NA	NA	NA	5456565	5456747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5456600_5456700
PB_novel_04993_0	chr11	+	172	1	Intergenic	novelGene_7009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATCAAT	NA	False	NA	NA	False	NA	NA	NA	5628026	5628198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5628000_5628200
PB_novel_04994_0	chr11	+	173	1	Intergenic	novelGene_7012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	333	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGACAAAAAACCCA	NA	False	NA	NA	False	NA	NA	NA	5694844	5695017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5694800_5695000
PB_novel_04995_0	chr11	+	182	1	Intergenic	novelGene_7010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATATTGCA	4654	False	NA	NA	False	NA	NA	NA	5633415	5633597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5633400_5633600
PB_novel_04998_0	chr11	+	177	1	Intergenic	novelGene_7011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5657894	5658071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5657900_5658100
PB_novel_05003_0	chr11	-	175	1	Intergenic	novelGene_7013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5708437	5708262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_5708300_5708400
PB_novel_05006_0	chr11	+	175	1	Intergenic	novelGene_7014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGATTTAGTTA	NA	False	NA	NA	False	NA	NA	NA	5734805	5734980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5734800_5735000
PB_novel_05007_0	chr11	+	197	1	Intergenic	novelGene_7015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATCTTTAAAG	628	False	NA	NA	False	NA	NA	NA	5762779	5762976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5762800_5763000
PB_novel_05008_0	chr11	+	176	1	Intergenic	novelGene_7016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAGAAAGAAGT	229	False	NA	NA	False	NA	NA	NA	5798225	5798401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_5798200_5798400
PB_novel_05014_0	chr11	-	180	1	Intergenic	novelGene_7017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAGACATAA	NA	False	NA	NA	False	NA	NA	NA	6146871	6146691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_6146700_6146900
PB_novel_05022_0	chr11	+	175	1	Intergenic	novelGene_7018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAGAGAAAAGAATG	5146	False	NA	NA	False	NA	NA	NA	6278912	6279087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_6278900_6279100
PB_novel_05023_0	chr11	-	181	1	Intergenic	novelGene_7019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAACAAAAAAAAA	7226	False	NA	NA	False	NA	NA	NA	6284934	6284753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_6284800_6284900
PB_novel_05024_0	chr11	-	177	1	Intergenic	novelGene_7020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	6302997	6302820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_6302800_6303000
PB_novel_05028_0	chr11	+	155	1	Intergenic	novelGene_7021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAATAAATAAATAAATCTA	NA	False	NA	NA	False	NA	NA	NA	6314379	6314534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_6314400_6314500
PB_novel_05036_0	chr11	+	155	1	Intergenic	novelGene_7022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	8028	False	NA	NA	False	NA	NA	NA	6374268	6374423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_6374300_6374400
PB_novel_05043_0	chr11	-	172	1	Intergenic	novelGene_7023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTTTAAAAAAAAGAAAAA	5551	False	NA	NA	False	NA	NA	NA	6438860	6438688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_6438700_6438900
PB_novel_05044_0	chr11	+	172	1	Intergenic	novelGene_7024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	6441398	6441570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_6441400_6441600
PB_novel_05049_2	chr11	-	3332	2	Antisense	novelGene_ENSMUSG00000000378.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6507145	6503780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_6504047_6504079
PB_novel_05060_0	chr11	+	177	1	Intergenic	novelGene_7025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAAAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	6603245	6603422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_6603200_6603400
PB_novel_05066_0	chr11	-	173	1	Intergenic	novelGene_7026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	7282038	7281865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_7281900_7282000
PB_novel_05079_0	chr11	+	175	1	Intergenic	novelGene_7027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	8583687	8583862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_8583700_8583900
PB_novel_05081_0	chr11	+	167	1	Intergenic	novelGene_7028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	8586484	8586651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_8586500_8586700
PB_novel_05082_0	chr11	-	176	1	Intergenic	novelGene_7029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATCCA	2038	False	NA	NA	False	NA	NA	NA	8622871	8622695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_8622700_8622900
PB_novel_05095_0	chr11	+	175	1	Intergenic	novelGene_7030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	310	False	NA	NA	False	NA	NA	NA	11744438	11744613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_11744400_11744600
PB_novel_05097_0	chr11	+	4775	1	Antisense	novelGene_ENSMUSG00000035455.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACCATAAAAAAAAAAAA	6492	False	NA	NA	False	NA	NA	NA	11750620	11755395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_11750600_11755400
PB_novel_05112_0	chr11	+	178	1	Intergenic	novelGene_7031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	12373885	12374063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_12373900_12374100
PB_novel_05117_0	chr11	-	175	1	Intergenic	novelGene_7032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTATAAAAAAAGAACTGA	NA	False	NA	NA	False	NA	NA	NA	15615306	15615131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_15615100_15615300
PB_novel_05121_0	chr11	+	175	1	Intergenic	novelGene_7033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16699757	16699932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_16699800_16699900
PB_novel_05128_0	chr11	+	177	1	Intergenic	novelGene_7034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17899567	17899744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_17899600_17899700
PB_novel_05137_0	chr11	+	157	1	Intergenic	novelGene_7035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	19852174	19852331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_19852200_19852300
PB_novel_05140_0	chr11	-	168	1	Intergenic	novelGene_7036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	19883785	19883617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_19883600_19883800
PB_novel_05143_0	chr11	-	3377	1	Antisense	novelGene_ENSMUSG00000045671.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19907563	19904186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_19904200_19907600
PB_novel_05144_0	chr11	-	171	1	Intergenic	novelGene_7037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	7040	False	NA	NA	False	NA	NA	NA	19918464	19918293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_19918300_19918500
PB_novel_05146_0	chr11	-	175	1	Intergenic	novelGene_7041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAAAAGAGTTTT	7595	False	NA	NA	False	NA	NA	NA	20056654	20056479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_20056500_20056700
PB_novel_05146_1	chr11	-	173	1	Intergenic	novelGene_7038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19950095	19949922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_19949900_19950100
PB_novel_05151_0	chr11	-	171	1	Intergenic	novelGene_7039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTTTAAAAAAAAGCCAATA	NA	False	NA	NA	False	NA	NA	NA	19954396	19954225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_19954200_19954400
PB_novel_05156_0	chr11	+	212	1	Intergenic	novelGene_7040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATTATAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20020783	20020995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_20020800_20021000
PB_novel_05165_0	chr11	+	177	1	Antisense	novelGene_ENSMUSG00000085035.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	20095971	20096148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_20096000_20096100
PB_novel_05168_1	chr11	+	175	1	Intergenic	novelGene_7042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAGTGACAG	NA	False	NA	NA	False	NA	NA	NA	20099113	20099288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_20099100_20099300
PB_novel_05170_0	chr11	+	166	1	Intergenic	novelGene_7043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20130634	20130800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_20130600_20130800
PB_novel_05172_1	chr11	-	173	1	Intergenic	novelGene_7044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	312	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	4845	False	NA	NA	False	NA	NA	NA	20148930	20148757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_20148800_20148900
PB_novel_05175_0	chr11	-	182	1	Intergenic	novelGene_7045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20172120	20171938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_20171900_20172100
PB_novel_05180_0	chr11	-	176	1	Intergenic	novelGene_7046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACTTATAAAG	NA	False	NA	NA	False	NA	NA	NA	20219305	20219129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_20219100_20219300
PB_novel_05187_0	chr11	+	180	1	Intergenic	novelGene_7047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	20358296	20358476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_20358300_20358500
PB_novel_05188_0	chr11	+	148	1	Intergenic	novelGene_7048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	20372047	20372195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_20372000_20372200
PB_novel_05189_0	chr11	+	174	1	Intergenic	novelGene_7049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTTAAAGTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20398407	20398581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_20398400_20398600
PB_novel_05202_0	chr11	-	3933	1	Intergenic	novelGene_7050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20613916	20609983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_20610000_20613900
PB_novel_05213_0	chr11	+	161	1	Intergenic	novelGene_7051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	3394	False	NA	NA	False	NA	NA	NA	21100761	21100922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_21100800_21100900
PB_novel_05215_0	chr11	+	176	1	Intergenic	novelGene_7052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAACAAACAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	21183419	21183595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_21183400_21183600
PB_novel_05216_0	chr11	+	6891	1	Genic_Genomic	ENSMUSG00000020128.16	novel	NA	NA	NA	NA	-354	-46414	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21188926	21195817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_21188900_21195800
PB_novel_05218_0	chr11	-	161	1	Intergenic	novelGene_7053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAGAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	21195482	21195321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_21195300_21195500
PB_novel_05219_0	chr11	-	181	1	Intergenic	novelGene_7054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21214470	21214289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_21214300_21214500
PB_novel_05221_0	chr11	+	162	1	Intergenic	novelGene_7055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATCTTAA	NA	False	NA	NA	False	NA	NA	NA	21238145	21238307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_21238100_21238300
PB_novel_05222_0	chr11	-	1758	1	NIC	ENSMUSG00000020321.17	novel	1958	9	NA	NA	128	-7153	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAGAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	21521806	21520048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_21520000_21521800
PB_novel_05223_0	chr11	-	173	1	Intergenic	novelGene_7056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21618274	21618101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_21618100_21618300
PB_novel_05231_0	chr11	+	193	1	Intergenic	novelGene_7057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGCTATAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22484194	22484387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_22484200_22484400
PB_novel_05239_0	chr11	-	163	1	Intergenic	novelGene_7058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAATATTT	NA	False	NA	NA	False	NA	NA	NA	22887677	22887514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_22887500_22887700
PB_novel_05250_0	chr11	-	171	1	Intergenic	novelGene_7059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAGTGAAT	5940	False	NA	NA	False	NA	NA	NA	23063285	23063114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_23063100_23063300
PB_novel_05252_0	chr11	-	179	1	Intergenic	novelGene_7060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAATTAACTTAAAA	NA	False	NA	NA	False	NA	NA	NA	23077579	23077400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_23077400_23077600
PB_novel_05254_0	chr11	+	178	1	Intergenic	novelGene_7061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAATAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	23134057	23134235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_23134100_23134200
PB_novel_05256_0	chr11	-	177	1	Intergenic	novelGene_7062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	23162030	23161853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_23161900_23162000
PB_novel_05258_0	chr11	-	1176	1	Intergenic	novelGene_7063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATTTAT	NA	False	NA	NA	False	NA	NA	NA	23223462	23222286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_23222300_23223500
PB_novel_05264_0	chr11	-	177	1	Intergenic	novelGene_7064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1886	False	NA	NA	False	NA	NA	NA	23255596	23255419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_23255400_23255600
PB_novel_05268_0	chr11	-	167	1	Intergenic	novelGene_7065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATTTTTAAAAAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	23271587	23271420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_23271400_23271600
PB_novel_05269_0	chr11	-	169	1	Intergenic	novelGene_7066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAAACAAAAACC	NA	False	NA	NA	False	NA	NA	NA	23282307	23282138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_23282100_23282300
PB_novel_05271_0	chr11	-	174	1	Intergenic	novelGene_7067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTTTTTTAAAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	23307471	23307297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_23307300_23307500
PB_novel_05274_0	chr11	-	1418	1	Intergenic	novelGene_7068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAACAAAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	23322418	23321000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_23321000_23322400
PB_novel_05280_0	chr11	+	175	1	Intergenic	novelGene_7069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATTTTTA	NA	False	NA	NA	False	NA	NA	NA	23453957	23454132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_23454000_23454100
PB_novel_05281_1	chr11	+	165	1	Intergenic	novelGene_7070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	23468243	23468408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_23468200_23468400
PB_novel_05285_0	chr11	-	173	1	Intergenic	novelGene_7071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23557724	23557551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_23557600_23557700
PB_novel_05286_0	chr11	+	994	1	Antisense	novelGene_ENSMUSG00002075061.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23576238	23577232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_23576200_23577200
PB_novel_05290_0	chr11	-	153	1	Intergenic	novelGene_7072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCCTAAG	NA	False	NA	NA	False	NA	NA	NA	23701602	23701449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_23701400_23701600
PB_novel_05291_0	chr11	+	176	1	Intergenic	novelGene_7073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGATTTCAGA	NA	False	NA	NA	False	NA	NA	NA	23717601	23717777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_23717600_23717800
PB_novel_05292_0	chr11	+	171	1	Intergenic	novelGene_7074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACATAATCAA	8731	False	NA	NA	False	NA	NA	NA	23763272	23763443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_23763300_23763400
PB_novel_05300_0	chr11	+	174	1	Intergenic	novelGene_7075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAAGATTCATAGT	1626	False	NA	NA	False	NA	NA	NA	24159931	24160105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_24159900_24160100
PB_novel_05305_0	chr11	+	177	1	Intergenic	novelGene_7076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	25357725	25357902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_25357700_25357900
PB_novel_05313_0	chr11	+	196	1	Intergenic	novelGene_7077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAACACAAAGACC	NA	False	NA	NA	False	NA	NA	NA	26222482	26222678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_26222500_26222700
PB_novel_05314_0	chr11	+	175	1	Intergenic	novelGene_7078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	280	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	26244630	26244805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_26244600_26244800
PB_novel_05317_0	chr11	-	2597	1	Intergenic	novelGene_7079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-21	NA	26364696	26362099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_26362100_26364700
PB_novel_05326_0	chr11	+	172	1	Intergenic	novelGene_7080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	27993610	27993782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_27993600_27993800
PB_novel_05329_0	chr11	+	169	1	Intergenic	novelGene_7081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28795743	28795912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_28795700_28795900
PB_novel_05343_0	chr11	+	1035	1	Intergenic	novelGene_7082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGCAAAAAAAAAGAAAA	NA	False	NA	NA	False	AATACA	-9	NA	29335384	29336419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_29335400_29336400
PB_novel_05344_0	chr11	-	176	1	Intergenic	novelGene_7083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAAAATACCCTAAAAC	NA	False	NA	NA	False	NA	NA	NA	29376544	29376368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_29376400_29376500
PB_novel_05354_0	chr11	+	156	1	Intergenic	novelGene_7084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAGACATAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	29543977	29544133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_29544000_29544100
PB_novel_05356_0	chr11	+	180	1	Intergenic	novelGene_7085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	29583539	29583719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_29583500_29583700
PB_novel_05357_0	chr11	+	176	1	Intergenic	novelGene_7086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29616744	29616920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_29616700_29616900
PB_novel_05365_0	chr11	-	4071	1	Intergenic	novelGene_7087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29665955	29661884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_29661900_29666000
PB_novel_05368_0	chr11	-	194	1	Intergenic	novelGene_7088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTGTTATAAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	29781973	29781779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_29781800_29782000
PB_novel_05378_0	chr11	-	172	1	Intergenic	novelGene_7089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTAACTCTTTAAAAAAAAAA	7288	False	NA	NA	False	NA	NA	NA	30464592	30464420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_30464400_30464600
PB_novel_05379_0	chr11	-	181	1	Intergenic	novelGene_7090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAGAA	981	False	NA	NA	False	NA	NA	NA	30470899	30470718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_30470700_30470900
PB_novel_05380_0	chr11	+	180	1	Intergenic	novelGene_7091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATGTA	NA	False	NA	NA	False	NA	NA	NA	30606607	30606787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_30606600_30606800
PB_novel_05385_0	chr11	-	174	1	Intergenic	novelGene_7092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAGAAA	1038	False	NA	NA	False	NA	NA	NA	30748056	30747882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_30747900_30748100
PB_novel_05393_0	chr11	+	4919	1	NIC	ENSMUSG00000020305.14	novel	3228	10	NA	NA	12	-70382	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACCAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30904459	30909378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_30904500_30909400
PB_novel_05400_0	chr11	-	3419	1	NIC	ENSMUSG00000020303.3	novel	3940	4	NA	NA	272	-916	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAGCAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	31319775	31316356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_31316400_31319800
PB_novel_05407_0	chr11	+	3579	1	Antisense	novelGene_ENSMUSG00000044502.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31615100	31618679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_31615100_31618700
PB_novel_05422_0	chr11	-	2213	1	Antisense	novelGene_ENSMUSG00000044949.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32467236	32465023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_32465000_32467200
PB_novel_05429_1	chr11	-	176	1	Intergenic	novelGene_7094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	282	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32579541	32579365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_32579400_32579500
PB_novel_05430_0	chr11	+	196	1	Intergenic	novelGene_7093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	4505	False	NA	NA	False	NA	NA	NA	32567574	32567770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_32567600_32567800
PB_novel_05435_0	chr11	-	178	1	Intergenic	novelGene_7095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAGAAA	1338	False	NA	NA	False	NA	NA	NA	32613367	32613189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_32613200_32613400
PB_novel_05441_0	chr11	-	471	1	Intergenic	novelGene_7096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACATAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	32859762	32859291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_32859300_32859800
PB_novel_05449_0	chr11	+	182	1	Intergenic	novelGene_7097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33201847	33202029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_33201800_33202000
PB_novel_05454_0	chr11	-	4003	1	Intergenic	novelGene_7098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAGA	-23	NA	33381713	33377710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_33377700_33381700
PB_novel_05455_0	chr11	-	175	1	Intergenic	novelGene_7099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAATATTTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	33385184	33385009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_33385000_33385200
PB_novel_05457_0	chr11	+	1122	1	Antisense	novelGene_ENSMUSG00000040594.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33432913	33434035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_33432900_33434000
PB_novel_05460_0	chr11	+	179	1	Intergenic	novelGene_7100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGTGTAG	NA	False	NA	NA	False	NA	NA	NA	33455949	33456128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_33455900_33456100
PB_novel_05461_0	chr11	+	841	1	Intergenic	novelGene_7101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33457009	33457850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_33457000_33457800
PB_novel_05462_0	chr11	+	175	1	Intergenic	novelGene_7102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	33461178	33461353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_33461200_33461400
PB_novel_05471_0	chr11	+	175	1	Intergenic	novelGene_7104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGACTC	NA	False	NA	NA	False	NA	NA	NA	33494834	33495009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_33494800_33495000
PB_novel_05472_0	chr11	-	2949	1	Intergenic	novelGene_7105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33500073	33497124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_33497100_33500100
PB_novel_05473_0	chr11	-	176	1	Intergenic	novelGene_7106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAACT	1458	False	NA	NA	False	NA	NA	NA	33512295	33512119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_33512100_33512300
PB_novel_05492_0	chr11	-	177	1	Intergenic	novelGene_7107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35750575	35750398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_35750400_35750600
PB_novel_05494_0	chr11	+	175	1	Intergenic	novelGene_7108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAGTCAGTA	7398	False	NA	NA	False	NA	NA	NA	35777242	35777417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_35777200_35777400
PB_novel_05501_0	chr11	-	154	1	Intergenic	novelGene_7109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAATAAAATTT	NA	False	NA	NA	False	NA	NA	NA	36615763	36615609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_36615600_36615800
PB_novel_05504_0	chr11	-	168	1	Intergenic	novelGene_7110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAATCTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37763744	37763576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_37763600_37763700
PB_novel_05512_0	chr11	+	177	1	Intergenic	novelGene_7111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	40594038	40594215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_40594000_40594200
PB_novel_05520_0	chr11	-	157	1	Intergenic	novelGene_7112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	41445985	41445828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_41445800_41446000
PB_novel_05523_0	chr11	+	177	1	Intergenic	novelGene_7113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTAAAAAAAAGGTAGAA	NA	False	NA	NA	False	NA	NA	NA	43258174	43258351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_43258200_43258400
PB_novel_05535_0	chr11	+	168	1	Intergenic	novelGene_7114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTAAAAAAAAAAAAAAAG	5139	False	NA	NA	False	NA	NA	NA	43603817	43603985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_43603800_43604000
PB_novel_05542_0	chr11	+	155	1	Intergenic	novelGene_7115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAATCAAACTATTA	NA	False	NA	NA	False	NA	NA	NA	44355702	44355857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_44355700_44355900
PB_novel_05547_0	chr11	-	179	1	Intergenic	novelGene_7116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGACCCT	1740	False	NA	NA	False	NA	NA	NA	44494562	44494383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_44494400_44494600
PB_novel_05553_1	chr11	+	176	1	Intergenic	novelGene_7117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45768724	45768900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_45768700_45768900
PB_novel_05557_0	chr11	+	156	1	Intergenic	novelGene_7118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	45950105	45950261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_45950100_45950300
PB_novel_05562_0	chr11	+	1489	1	Intergenic	novelGene_7119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCCA	1547	False	NA	NA	False	NA	NA	NA	46126554	46128043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_46126600_46128000
PB_novel_05564_0	chr11	-	190	1	Intergenic	novelGene_7120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATCTTTAAAATAAAAAAA	5285	False	NA	NA	False	NA	NA	NA	46190774	46190584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_46190600_46190800
PB_novel_05566_1	chr11	-	172	1	Intergenic	novelGene_7121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	329	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAAAGAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	46300002	46299830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_46299800_46300000
PB_novel_05567_0	chr11	+	221	1	Intergenic	novelGene_7122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGGACAGTCAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	46356701	46356922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_46356700_46356900
PB_novel_05569_0	chr11	-	172	1	Intergenic	novelGene_7123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	4268	False	NA	NA	False	NA	NA	NA	46694794	46694622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_46694600_46694800
PB_novel_05570_0	chr11	-	181	1	Intergenic	novelGene_7124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	46785186	46785005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_46785000_46785200
PB_novel_05572_0	chr11	-	172	1	Intergenic	novelGene_7125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAATCACCAGCTCA	NA	False	NA	NA	False	NA	NA	NA	48573934	48573762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_48573800_48573900
PB_novel_05574_0	chr11	-	175	1	Intergenic	novelGene_7126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAGCTTCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48621842	48621667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_48621700_48621800
PB_novel_05576_0	chr11	+	175	1	Intergenic	novelGene_7127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	48664791	48664966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_48664800_48665000
PB_novel_05578_0	chr11	+	161	1	Intergenic	novelGene_7128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48684497	48684658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_48684500_48684700
PB_novel_05581_0	chr11	+	144	1	Intergenic	novelGene_7129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAATATTTTTTAAAAA	7966	False	NA	NA	False	NA	NA	NA	48724044	48724188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_48724000_48724200
PB_novel_05583_0	chr11	-	177	1	Intergenic	novelGene_7130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAATGAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	48853508	48853331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_48853300_48853500
PB_novel_05584_0	chr11	-	177	1	Intergenic	novelGene_7131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAATGAAGAACAA	2876	False	NA	NA	False	NA	NA	NA	48925350	48925173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_48925200_48925400
PB_novel_05591_1	chr11	+	177	1	Intergenic	novelGene_7132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTTGTA	NA	False	NA	NA	False	NA	NA	NA	49576391	49576568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_49576400_49576600
PB_novel_05602_0	chr11	-	179	1	Intergenic	novelGene_7133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	49701692	49701513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_49701500_49701700
PB_novel_05604_0	chr11	+	1391	1	Intergenic	novelGene_7134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAACAAAGAG	NA	False	NA	NA	False	NA	NA	NA	49734210	49735601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_49734200_49735600
PB_novel_05606_0	chr11	-	175	1	Intergenic	novelGene_7135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTAAAAAAAATGCCTG	NA	False	NA	NA	False	NA	NA	NA	49930451	49930276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_49930300_49930500
PB_novel_05609_0	chr11	+	159	1	Intergenic	novelGene_7136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	9696	False	NA	NA	False	NA	NA	NA	49992807	49992966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_49992800_49993000
PB_novel_05610_0	chr11	+	172	1	Intergenic	novelGene_7137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	50037636	50037808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_50037600_50037800
PB_novel_05611_0	chr11	+	163	1	Intergenic	novelGene_7138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATTAATTAATTAATTAAT	8003	False	NA	NA	False	NA	NA	NA	50047043	50047206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_50047000_50047200
PB_novel_05613_0	chr11	-	173	1	Intergenic	novelGene_7139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAATCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50058407	50058234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_50058200_50058400
PB_novel_05631_0	chr11	+	178	1	Intergenic	novelGene_7140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAACAAAACAAAACA	4160	False	NA	NA	False	NA	NA	NA	50207123	50207301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_50207100_50207300
PB_novel_05638_0	chr11	+	206	1	Intergenic	novelGene_7141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATATCTTTGGAGAAA	NA	False	NA	NA	False	NA	NA	NA	50286947	50287153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_50286900_50287200
PB_novel_05647_0	chr11	-	357	1	Intergenic	novelGene_7142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51129598	51129241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_51129200_51129600
PB_novel_05664_0	chr11	+	158	1	Intergenic	novelGene_7143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	51553207	51553365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_51553200_51553400
PB_novel_05668_0	chr11	+	180	1	Intergenic	novelGene_7144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAACAAAACACACA	NA	False	NA	NA	False	NA	NA	NA	51574254	51574434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_51574300_51574400
PB_novel_05673_0	chr11	+	1570	1	Antisense	novelGene_ENSMUSG00000036391.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51603503	51605073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_51603500_51605100
PB_novel_05676_0	chr11	+	173	1	Intergenic	novelGene_7145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAACATCTAT	5266	False	NA	NA	False	NA	NA	NA	51649592	51649765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_51649600_51649800
PB_novel_05681_0	chr11	+	174	1	Intergenic	novelGene_7146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAGAAAGAAAT	2740	False	NA	NA	False	NA	NA	NA	51758682	51758856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_51758700_51758900
PB_novel_05683_0	chr11	-	174	1	Intergenic	novelGene_7147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAACAAAA	6499	False	NA	NA	False	NA	NA	NA	51851516	51851342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_51851300_51851500
PB_novel_05692_0	chr11	-	167	2	Intergenic	novelGene_7148	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	52181406	51984958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_51985002_52181282
PB_novel_05698_0	chr11	+	176	1	Intergenic	novelGene_7149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATCTGAG	NA	False	NA	NA	False	NA	NA	NA	52071799	52071975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_52071800_52072000
PB_novel_05699_0	chr11	-	176	1	Intergenic	novelGene_7150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52107681	52107505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_52107500_52107700
PB_novel_05706_0	chr11	-	174	1	Intergenic	novelGene_7151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATT	9500	False	NA	NA	False	NA	NA	NA	52247574	52247400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_52247400_52247600
PB_novel_05707_0	chr11	-	5022	1	Intergenic	novelGene_7152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	6284	False	NA	NA	False	NA	NA	NA	52258711	52253689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_52253700_52258700
PB_novel_05709_0	chr11	-	177	1	Intergenic	novelGene_7153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAAGAAGCA	9030	False	NA	NA	False	NA	NA	NA	52274318	52274141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_52274100_52274300
PB_novel_05710_0	chr11	-	175	1	Intergenic	novelGene_7154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAGTAAATTAAAAAAAAAA	7223	False	NA	NA	False	NA	NA	NA	52277181	52277006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_52277000_52277200
PB_novel_05713_0	chr11	+	174	1	Intergenic	novelGene_7155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	990	False	NA	NA	False	NA	NA	NA	52283686	52283860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_52283700_52283900
PB_novel_05715_0	chr11	-	179	1	Intergenic	novelGene_7156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAATAAAATAAA	9951	False	NA	NA	False	NA	NA	NA	52296766	52296587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_52296600_52296800
PB_novel_05722_0	chr11	-	178	1	Intergenic	novelGene_7157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATGTCTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52434903	52434725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_52434700_52434900
PB_novel_05731_0	chr11	+	2640	1	Antisense	novelGene_ENSMUSG00000020361.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACTAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	53172587	53175227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_53172600_53175200
PB_novel_05734_0	chr11	+	2326	1	Intergenic	novelGene_7158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCCA	NA	False	NA	NA	False	NA	NA	NA	53185515	53187841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_53185500_53187800
PB_novel_05735_0	chr11	-	1088	1	NIC	ENSMUSG00000020361.14	novel	4618	19	NA	NA	21	-35102	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53191263	53190175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_53190200_53191300
PB_novel_05739_0	chr11	-	176	1	Intergenic	novelGene_7159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	53201427	53201251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_53201300_53201400
PB_novel_05740_0	chr11	-	166	1	Intergenic	novelGene_7160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53204146	53203980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_53204000_53204100
PB_novel_05742_0	chr11	+	155	1	Intergenic	novelGene_7161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAACAA	8510	False	NA	NA	False	NA	NA	NA	53209170	53209325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_53209200_53209300
PB_novel_05753_0	chr11	+	133	1	Intergenic	novelGene_7162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53237526	53237659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_53237500_53237700
PB_novel_05757_0	chr11	-	175	1	Intergenic	novelGene_7163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAAAACAAAACAAAA	2680	False	NA	NA	False	NA	NA	NA	53255070	53254895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_53254900_53255100
PB_novel_05759_1	chr11	-	175	1	Intergenic	novelGene_7164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2437	False	NA	NA	False	NA	NA	NA	53269586	53269411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_53269400_53269600
PB_novel_05763_0	chr11	-	172	1	Intergenic	novelGene_7165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	53325616	53325444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_53325400_53325600
PB_novel_05766_1	chr11	-	176	1	Intergenic	novelGene_7166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	426	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCAAAACAAT	NA	False	NA	NA	False	NA	NA	NA	53375760	53375584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_53375600_53375800
PB_novel_05774_0	chr11	+	171	1	Intergenic	novelGene_7167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTTAAAAAATAAAAAAATA	1650	False	NA	NA	False	NA	NA	NA	53569044	53569215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_53569000_53569200
PB_novel_05775_0	chr11	-	230	1	Intergenic	novelGene_7168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAAAGAA	NA	False	NA	NA	False	AATAAA	-14	NA	53572294	53572064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_53572100_53572300
PB_novel_05778_0	chr11	+	180	1	Intergenic	novelGene_7169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	53646351	53646531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_53646400_53646500
PB_novel_05779_0	chr11	+	162	1	Intergenic	novelGene_7170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATCTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53657173	53657335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_53657200_53657300
PB_novel_05788_0	chr11	-	174	1	Intergenic	novelGene_7171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAAATCTTTT	NA	False	NA	NA	False	NA	NA	NA	54288196	54288022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_54288000_54288200
PB_novel_05789_0	chr11	+	1195	1	FSM	ENSMUSG00000078151.4	ENSMUST00000144172.2	876	1	256	-575	256	575	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-18	NA	54292173	54293368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_+_54292200_54293400
PB_novel_05793_0	chr11	+	4524	1	NIC	ENSMUSG00000037533.21	novel	8189	28	NA	NA	10	-25636	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54413725	54418249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_54413700_54418200
PB_novel_05795_0	chr11	-	176	1	Intergenic	novelGene_7172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	54564544	54564368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_54564400_54564500
PB_novel_05798_0	chr11	+	141	1	Intergenic	novelGene_7173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATATATATATTAAAAAA	1780	False	NA	NA	False	NA	NA	NA	54628452	54628593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_54628500_54628600
PB_novel_05799_0	chr11	-	168	1	Intergenic	novelGene_7174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54671952	54671784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_54671800_54672000
PB_novel_05800_1	chr11	+	197	1	Intergenic	novelGene_7175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAGTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54689592	54689789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_54689600_54689800
PB_novel_05801_0	chr11	+	175	1	Intergenic	novelGene_7176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54734779	54734954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_54734800_54735000
PB_novel_05802_0	chr11	+	142	1	Intergenic	novelGene_7177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54734993	54735135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_54735000_54735100
PB_novel_05803_1	chr11	+	174	1	Intergenic	novelGene_7178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACCCAAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	54742203	54742377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_54742200_54742400
PB_novel_05808_0	chr11	+	167	1	Intergenic	novelGene_7179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54769253	54769420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_54769300_54769400
PB_novel_05814_0	chr11	+	156	1	Intergenic	novelGene_7180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	6979	False	NA	NA	False	NA	NA	NA	54873415	54873571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_54873400_54873600
PB_novel_05819_0	chr11	+	158	1	Intergenic	novelGene_7181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAACAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	55012846	55013004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_55012800_55013000
PB_novel_05830_0	chr11	+	121	1	Intergenic	novelGene_7182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATCTGAAAGTTT	NA	False	NA	NA	False	AATAAA	-10	NA	55322309	55322430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_55322300_55322400
PB_novel_05836_0	chr11	-	171	1	Intergenic	novelGene_7183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATATATATATATATA	NA	False	NA	NA	False	NA	NA	NA	55366434	55366263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_55366300_55366400
PB_novel_05840_0	chr11	-	1080	1	Intergenic	novelGene_7184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCAC	7445	False	NA	NA	False	NA	NA	NA	55388476	55387396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_55387400_55388500
PB_novel_05841_0	chr11	-	169	1	Intergenic	novelGene_7185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAGAAAAGAAAA	30	False	NA	NA	False	NA	NA	NA	55419879	55419710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_55419700_55419900
PB_novel_05842_0	chr11	-	178	1	Intergenic	novelGene_7186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	55437546	55437368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_55437400_55437500
PB_novel_05850_0	chr11	-	174	1	Intergenic	novelGene_7187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAACACAAAAAACAC	7025	False	NA	NA	False	NA	NA	NA	57500106	57499932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_57499900_57500100
PB_novel_05853_1	chr11	-	176	1	Intergenic	novelGene_7188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAATAAGACAG	NA	False	NA	NA	False	NA	NA	NA	57608949	57608773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_57608800_57608900
PB_novel_05862_0	chr11	-	175	1	Intergenic	novelGene_7189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAACAACAATAACAA	6804	False	NA	NA	False	NA	NA	NA	57794669	57794494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_57794500_57794700
PB_novel_05866_1	chr11	+	176	1	Intergenic	novelGene_7190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAACTCA	2507	False	NA	NA	False	NA	NA	NA	57834220	57834396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_57834200_57834400
PB_novel_05870_0	chr11	-	173	1	Intergenic	novelGene_7191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAGAAAAAGAAAACAA	NA	False	NA	NA	False	NA	NA	NA	57928321	57928148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_57928100_57928300
PB_novel_05872_0	chr11	+	169	1	Intergenic	novelGene_7192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	57935244	57935413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_57935200_57935400
PB_novel_05873_0	chr11	-	178	1	Intergenic	novelGene_7193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	57965657	57965479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_57965500_57965700
PB_novel_05874_0	chr11	+	174	1	Intergenic	novelGene_7194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57967673	57967847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_57967700_57967800
PB_novel_05885_0	chr11	-	171	1	Intergenic	novelGene_7195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAACTGTAGT	NA	False	NA	NA	False	NA	NA	NA	58039660	58039489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_58039500_58039700
PB_novel_05887_0	chr11	-	176	1	Intergenic	novelGene_7196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATACCTT	NA	False	NA	NA	False	NA	NA	NA	58061545	58061369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_58061400_58061500
PB_novel_05891_0	chr11	+	109	1	Intergenic	novelGene_7197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGAGAAACCCTGTCTC	635	False	NA	NA	False	NA	NA	NA	58190856	58190965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_58190900_58191000
PB_novel_05903_1	chr11	-	3785	2	Genic_Genomic	ENSMUSG00000020496.11	novel	1949	4	NA	NA	23	-2583	multi-exon	TRUE	canonical	1	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58829719	58825696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_58826084_58826321
PB_novel_05907_1	chr11	+	183	1	Intergenic	novelGene_7199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	59083506	59083689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_59083500_59083700
PB_novel_05908_0	chr11	+	171	1	Intergenic	novelGene_7198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	59033499	59033670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_59033500_59033700
PB_novel_05912_0	chr11	+	161	1	Intergenic	novelGene_7200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	59244721	59244882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_59244700_59244900
PB_novel_05914_0	chr11	+	170	1	Intergenic	novelGene_7201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59250350	59250520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_59250400_59250500
PB_novel_05915_0	chr11	-	169	1	Intergenic	novelGene_7202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAGAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	59277338	59277169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_59277200_59277300
PB_novel_05919_0	chr11	+	2331	1	Antisense	novelGene_ENSMUSG00000009894.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAACCAAAAAAAAAAAAA	4115	False	NA	NA	False	NA	NA	NA	59311042	59313373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_59311000_59313400
PB_novel_05926_0	chr11	+	172	1	Intergenic	novelGene_7203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGTTAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	59366933	59367105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_59366900_59367100
PB_novel_05934_0	chr11	-	181	1	Intergenic	novelGene_7204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGAGTGACAC	7704	False	NA	NA	False	NA	NA	NA	59442290	59442109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_59442100_59442300
PB_novel_05940_0	chr11	+	178	1	Intergenic	novelGene_7205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	932	False	NA	NA	False	NA	NA	NA	59728559	59728737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_59728600_59728700
PB_novel_05942_0	chr11	-	179	1	Intergenic	novelGene_7206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59792482	59792303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_59792300_59792500
PB_novel_05945_0	chr11	-	181	1	Intergenic	novelGene_7207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAATGAATAAATCTTTAA	NA	False	NA	NA	False	NA	NA	NA	59883274	59883093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_59883100_59883300
PB_novel_05949_0	chr11	+	174	1	Intergenic	novelGene_7208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTGTAAAAGGAAAGAAAGA	293	False	NA	NA	False	NA	NA	NA	59948528	59948702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_59948500_59948700
PB_novel_05954_0	chr11	-	150	1	Intergenic	novelGene_7209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATACCAAAAAAAAAAAAAA	1644	False	NA	NA	False	NA	NA	NA	60113587	60113437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_60113400_60113600
PB_novel_05956_0	chr11	-	175	1	Intergenic	novelGene_7210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	761	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60184586	60184411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_60184400_60184600
PB_novel_05960_0	chr11	+	1451	1	Intergenic	novelGene_7211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATATAT	NA	False	NA	NA	False	NA	NA	NA	60237489	60238940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_60237500_60238900
PB_novel_05965_0	chr11	+	176	1	Intergenic	novelGene_7212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	60302269	60302445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_60302300_60302400
PB_novel_05992_0	chr11	+	4118	1	Antisense	novelGene_ENSMUSG00000002814.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	60640141	60644259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_60640100_60644300
PB_novel_05994_0	chr11	-	176	1	Intergenic	novelGene_7213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAGAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	60661356	60661180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_60661200_60661400
PB_novel_05995_0	chr11	+	166	1	Intergenic	novelGene_7214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	60674120	60674286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_60674100_60674300
PB_novel_05997_0	chr11	-	2976	1	NIC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	-1193	-266	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	8866	False	NA	NA	False	NA	NA	NA	60687016	60684040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_60684000_60687000
PB_novel_05998_0	chr11	+	173	1	Intergenic	novelGene_7215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	60684217	60684390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_60684200_60684400
PB_novel_06002_0	chr11	-	133	1	Genic_Genomic	ENSMUSG00000020534.15	novel	NA	NA	NA	NA	-103	-7344	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60702647	60702514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_60702500_60702600
PB_novel_06004_0	chr11	+	177	1	Intergenic	novelGene_7216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAATAAAACAAAAC	71	False	NA	NA	False	NA	NA	NA	60704769	60704946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_60704800_60704900
PB_novel_06005_1	chr11	+	173	1	Intergenic	novelGene_7218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	498	False	NA	NA	False	NA	NA	NA	60778080	60778253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_60778100_60778300
PB_novel_06011_0	chr11	+	167	1	Intergenic	novelGene_7217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAGGAAAAG	6886	False	NA	NA	False	NA	NA	NA	60735377	60735544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_60735400_60735500
PB_novel_06015_0	chr11	-	162	1	Intergenic	novelGene_7219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGATTAAAAAAAAAAAAAAA	8571	False	NA	NA	False	NA	NA	NA	60800288	60800126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_60800100_60800300
PB_novel_06021_0	chr11	-	176	1	Intergenic	novelGene_7220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAGAAAACCCATCT	NA	False	NA	NA	False	NA	NA	NA	60939124	60938948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_60938900_60939100
PB_novel_06026_0	chr11	-	176	1	Intergenic	novelGene_7221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGACCG	NA	False	NA	NA	False	NA	NA	NA	61026184	61026008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_61026000_61026200
PB_novel_06029_0	chr11	-	186	1	Intergenic	novelGene_7222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	463	False	NA	NA	False	NA	NA	NA	61205735	61205549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_61205500_61205700
PB_novel_06035_0	chr11	-	222	1	Intergenic	novelGene_7223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61394127	61393905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_61393900_61394100
PB_novel_06037_0	chr11	-	176	1	Intergenic	novelGene_7224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61474066	61473890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_61473900_61474100
PB_novel_06044_0	chr11	-	171	1	Intergenic	novelGene_7225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAGACAGTGGAA	NA	False	NA	NA	False	NA	NA	NA	61676180	61676009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_61676000_61676200
PB_novel_06049_0	chr11	-	176	1	Intergenic	novelGene_7226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAGTAGAA	NA	False	NA	NA	False	NA	NA	NA	61728936	61728760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_61728800_61728900
PB_novel_06070_1	chr11	+	177	1	Intergenic	novelGene_7227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	62268248	62268425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_62268200_62268400
PB_novel_06073_0	chr11	+	1225	1	Intergenic	novelGene_7228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62305919	62307144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_62305900_62307100
PB_novel_06076_0	chr11	+	2630	1	Antisense	novelGene_ENSMUSG00000018501.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAATAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	62323233	62325863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_62323200_62325900
PB_novel_06079_0	chr11	-	1734	1	NIC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	1	-35859	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62348148	62346414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_62346400_62348100
PB_novel_06081_0	chr11	-	3821	1	Intergenic	novelGene_7229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62358120	62354299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_62354300_62358100
PB_novel_06082_2	chr11	-	169	1	Intergenic	novelGene_7231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	62399308	62399139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_62399100_62399300
PB_novel_06083_0	chr11	+	166	1	Intergenic	novelGene_7230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	62358354	62358520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_62358400_62358500
PB_novel_06092_0	chr11	-	329	1	Antisense	novelGene_ENSMUSG00000086636.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CGAAAAACCAAAAAAAAAAA	2343	False	NA	NA	False	NA	NA	NA	62413975	62413646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_62413600_62414000
PB_novel_06094_0	chr11	+	3397	1	Antisense	novelGene_ENSMUSG00000018509.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62424680	62428077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_62424700_62428100
PB_novel_06101_0	chr11	+	179	1	Intergenic	novelGene_7232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAAAAAAAGTTG	929	False	NA	NA	False	NA	NA	NA	62513352	62513531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_62513400_62513500
PB_novel_06106_0	chr11	+	167	1	Intergenic	novelGene_7233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATCTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62594463	62594630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_62594500_62594600
PB_novel_06109_0	chr11	-	175	1	Intergenic	novelGene_7234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAATACATACATA	6276	False	NA	NA	False	NA	NA	NA	62610860	62610685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_62610700_62610900
PB_novel_06124_0	chr11	-	180	1	Intergenic	novelGene_7235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	63896863	63896683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_63896700_63896900
PB_novel_06130_0	chr11	+	998	1	Intergenic	novelGene_7236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAGGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65026319	65027317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_65026300_65027300
PB_novel_06131_0	chr11	+	4493	1	Intergenic	novelGene_7237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65044239	65048732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_65044200_65048700
PB_novel_06134_0	chr11	-	178	1	Intergenic	novelGene_7238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAATTGGGAA	NA	False	NA	NA	False	NA	NA	NA	66215277	66215099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_66215100_66215300
PB_novel_06135_0	chr11	+	175	1	Intergenic	novelGene_7239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTGAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	66412190	66412365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_66412200_66412400
PB_novel_06141_0	chr11	+	4468	1	NIC	ENSMUSG00000048070.5	novel	4200	2	NA	NA	12	-13416	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	66802818	66807286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_66802800_66807300
PB_novel_06142_0	chr11	+	178	1	Intergenic	novelGene_7240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	670	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAATAGATAT	NA	False	NA	NA	False	NA	NA	NA	66880710	66880888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_66880700_66880900
PB_novel_06148_0	chr11	-	176	1	Intergenic	novelGene_7241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	66965389	66965213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_66965200_66965400
PB_novel_06151_0	chr11	+	176	1	Intergenic	novelGene_7242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAGTATAGACCA	NA	False	NA	NA	False	NA	NA	NA	67191496	67191672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_67191500_67191700
PB_novel_06165_0	chr11	-	181	1	Intergenic	novelGene_7244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	331	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	68055856	68055675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_68055700_68055900
PB_novel_06168_0	chr11	-	179	1	Intergenic	novelGene_7245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAAGTGAGTTTA	NA	False	NA	NA	False	NA	NA	NA	68072781	68072602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_68072600_68072800
PB_novel_06169_0	chr11	+	174	1	Intergenic	novelGene_7246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAACAAAAAACAAACA	5572	False	NA	NA	False	NA	NA	NA	68128249	68128423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_68128200_68128400
PB_novel_06170_0	chr11	+	189	1	Intergenic	novelGene_7247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	68262270	68262459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_68262300_68262500
PB_novel_06174_0	chr11	-	176	1	Intergenic	novelGene_7248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	68473193	68473017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_68473000_68473200
PB_novel_06178_0	chr11	+	135	1	Intergenic	novelGene_7249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAGAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	68550229	68550364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_68550200_68550400
PB_novel_06181_0	chr11	+	175	1	Intergenic	novelGene_7250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGGGCTG	5881	False	NA	NA	False	NA	NA	NA	68620100	68620275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_68620100_68620300
PB_novel_06184_0	chr11	-	184	1	Intergenic	novelGene_7251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACTA	NA	False	NA	NA	False	NA	NA	NA	68704861	68704677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_68704700_68704900
PB_novel_06185_1	chr11	-	176	1	Intergenic	novelGene_7252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	68731634	68731458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_68731500_68731600
PB_novel_06187_0	chr11	+	2659	1	Antisense	novelGene_ENSMUSG00000018736.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATGCAAAAAAAAAAAAAAAG	8730	False	NA	NA	False	ATTAAA	-44	NA	68713236	68715895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_68713200_68715900
PB_novel_06194_0	chr11	-	176	1	Intergenic	novelGene_7253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTAATTTTAAAAAAAGAA	NA	False	NA	-4	True	NA	NA	NA	68801928	68801752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_68801800_68801900
PB_novel_06201_0	chr11	-	176	1	Intergenic	novelGene_7254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACTTTATTAA	3127	False	NA	NA	False	NA	NA	NA	68868778	68868602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_68868600_68868800
PB_novel_06204_0	chr11	-	169	1	Intergenic	novelGene_7255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	68890597	68890428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_68890400_68890600
PB_novel_06206_0	chr11	+	166	1	Intergenic	novelGene_7256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGACAAA	NA	False	NA	NA	False	NA	NA	NA	68899544	68899710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_68899500_68899700
PB_novel_06208_0	chr11	-	131	1	Intergenic	novelGene_7257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGGAAAAAAAAAAAAAACCG	NA	False	NA	NA	False	NA	NA	NA	68904754	68904623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_68904600_68904800
PB_novel_06212_0	chr11	+	120	1	Intergenic	novelGene_7258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	68932650	68932770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_68932600_68932800
PB_novel_06215_0	chr11	+	164	1	Intergenic	novelGene_7259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATCTTTAAAAAAAT	9049	False	NA	NA	False	NA	NA	NA	68966033	68966197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_68966000_68966200
PB_novel_06219_0	chr11	-	175	1	Intergenic	novelGene_7260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	69073756	69073581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_69073600_69073800
PB_novel_06220_0	chr11	+	180	1	Intergenic	novelGene_7261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAGAAGGAAAGGAA	5599	False	NA	NA	False	NA	NA	NA	69079025	69079205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69079000_69079200
PB_novel_06221_0	chr11	+	170	1	Intergenic	novelGene_7262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAATCTTAAAAA	9532	False	NA	NA	False	NA	NA	NA	69082958	69083128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69083000_69083100
PB_novel_06228_0	chr11	+	175	1	Intergenic	novelGene_7263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69284853	69285028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69284900_69285000
PB_novel_06229_0	chr11	+	380	1	Antisense	novelGene_ENSMUSG00000018476.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-36	NA	69289773	69290153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_69289800_69290200
PB_novel_06232_0	chr11	-	177	1	Intergenic	novelGene_7264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAGTTAAGGAAA	9035	False	NA	NA	False	NA	NA	NA	69359036	69358859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_69358900_69359000
PB_novel_06234_0	chr11	-	175	1	Intergenic	novelGene_7265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGAG	9097	False	NA	NA	False	NA	NA	NA	69386590	69386415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_69386400_69386600
PB_novel_06235_0	chr11	-	176	1	Intergenic	novelGene_7266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	6526	False	NA	NA	False	NA	NA	NA	69413814	69413638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_69413600_69413800
PB_novel_06236_1	chr11	+	176	1	Intergenic	novelGene_7267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	330	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9155	False	NA	NA	False	NA	NA	NA	69432491	69432667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69432500_69432700
PB_novel_06238_0	chr11	+	3410	1	NIC	ENSMUSG00000059552.14	novel	1867	11	NA	NA	-7	-6017	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAACTAAATCAAAC	NA	False	NA	NA	False	NA	NA	NA	69471220	69474630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_69471200_69474600
PB_novel_06239_0	chr11	+	172	1	Intergenic	novelGene_7268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATTCTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69486925	69487097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69486900_69487100
PB_novel_06244_0	chr11	+	176	1	Intergenic	novelGene_7269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGGACAA	NA	False	NA	NA	False	NA	NA	NA	69516861	69517037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69516900_69517000
PB_novel_06246_0	chr11	-	1725	1	FSM	ENSMUSG00000080573.3	ENSMUST00000116923.3	120	1	43	-1648	43	1648	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACACTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-17	NA	69526302	69524577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_69524600_69526300
PB_novel_06247_0	chr11	-	173	1	Intergenic	novelGene_7270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	69528992	69528819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_69528800_69529000
PB_novel_06254_0	chr11	+	174	1	Intergenic	novelGene_7271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATAGTTT	1346	False	NA	NA	False	NA	NA	NA	69587382	69587556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69587400_69587600
PB_novel_06256_0	chr11	+	167	1	Intergenic	novelGene_7272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATCTAAAAAAAAAA	330	False	NA	NA	False	NA	NA	NA	69590003	69590170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69590000_69590200
PB_novel_06260_1	chr11	-	174	1	Intergenic	novelGene_7279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAACAACAACAACAAC	9723	False	NA	NA	False	NA	NA	NA	69795922	69795748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_69795700_69795900
PB_novel_06266_0	chr11	+	179	1	Intergenic	novelGene_7273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	69614381	69614560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69614400_69614600
PB_novel_06269_0	chr11	+	177	1	Intergenic	novelGene_7274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAGTACACT	7776	False	NA	NA	False	NA	NA	NA	69641523	69641700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69641500_69641700
PB_novel_06273_0	chr11	+	177	1	Intergenic	novelGene_7275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	69706999	69707176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69707000_69707200
PB_novel_06274_0	chr11	+	177	1	Intergenic	novelGene_7276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	69710169	69710346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69710200_69710300
PB_novel_06275_0	chr11	+	140	1	Intergenic	novelGene_7277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAATAAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	69731526	69731666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69731500_69731700
PB_novel_06277_0	chr11	-	175	1	Intergenic	novelGene_7278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAACATTA	NA	False	NA	NA	False	NA	NA	NA	69765012	69764837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_69764800_69765000
PB_novel_06282_0	chr11	+	177	1	Intergenic	novelGene_7280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTTTTAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	69821622	69821799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_69821600_69821800
PB_novel_06284_1	chr11	-	177	1	Intergenic	novelGene_7281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAACAAAAA	3973	False	NA	NA	False	NA	NA	NA	69877005	69876828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_69876800_69877000
PB_novel_06287_0	chr11	-	176	1	Antisense	novelGene_ENSMUSG00000020886.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	69925179	69925003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_69925000_69925200
PB_novel_06289_0	chr11	-	156	1	Intergenic	novelGene_7282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAGAAAACAACAAAG	NA	False	NA	NA	False	NA	NA	NA	70137603	70137447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_70137400_70137600
PB_novel_06290_0	chr11	+	178	1	Intergenic	novelGene_7283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70160192	70160370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_70160200_70160400
PB_novel_06291_0	chr11	-	194	1	Intergenic	novelGene_7284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCTTTAAAAAAAAAAAAAA	4138	False	NA	NA	False	NA	NA	NA	70181093	70180899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_70180900_70181100
PB_novel_06297_0	chr11	-	174	1	Intergenic	novelGene_7285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAGATGAACACATAA	NA	False	NA	NA	False	NA	NA	NA	70309141	70308967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_70309000_70309100
PB_novel_06299_0	chr11	+	158	1	Intergenic	novelGene_7286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTCTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70316125	70316283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_70316100_70316300
PB_novel_06301_0	chr11	+	179	1	Intergenic	novelGene_7287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	70349156	70349335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_70349200_70349300
PB_novel_06302_0	chr11	-	175	1	Intergenic	novelGene_7288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	9147	False	NA	NA	False	NA	NA	NA	70372814	70372639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_70372600_70372800
PB_novel_06304_0	chr11	-	137	1	Intergenic	novelGene_7289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAGGAGGCAGAGT	9472	False	NA	NA	False	AATAAA	-28	NA	70397669	70397532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_70397500_70397700
PB_novel_06313_0	chr11	+	458	1	Intergenic	novelGene_7290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAATAAAAACAC	7237	False	NA	NA	False	NA	NA	NA	70518332	70518790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_70518300_70518800
PB_novel_06314_0	chr11	+	175	1	Intergenic	novelGene_7291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAATAAAAAC	7895	False	NA	NA	False	NA	NA	NA	70518990	70519165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_70519000_70519200
PB_novel_06315_0	chr11	+	177	1	Intergenic	novelGene_7292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAATATTTTTT	2663	False	NA	NA	False	NA	NA	NA	70522292	70522469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_70522300_70522500
PB_novel_06322_0	chr11	-	176	1	Intergenic	novelGene_7293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	5252	False	NA	NA	False	NA	NA	NA	70581906	70581730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_70581700_70581900
PB_novel_06331_0	chr11	+	2481	1	NIC	ENSMUSG00000020817.17	novel	5408	18	NA	NA	0	-46859	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70735607	70738088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_70735600_70738100
PB_novel_06333_0	chr11	-	176	1	Intergenic	novelGene_7294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAACAGGAAC	NA	False	NA	NA	False	NA	NA	NA	70740384	70740208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_70740200_70740400
PB_novel_06338_0	chr11	-	182	1	Intergenic	novelGene_7295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	70896454	70896272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_70896300_70896500
PB_novel_06340_0	chr11	-	166	1	Intergenic	novelGene_7296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCTTTTTTAAAAAAG	7701	False	NA	NA	False	NA	NA	NA	71011579	71011413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_71011400_71011600
PB_novel_06352_0	chr11	+	181	1	Intergenic	novelGene_7298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	72189214	72189395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_72189200_72189400
PB_novel_06355_1	chr11	-	165	1	Intergenic	novelGene_7299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	514	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAACAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	72321645	72321480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_72321500_72321600
PB_novel_06357_0	chr11	+	176	1	Intergenic	novelGene_7300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAAAAGTTTG	4828	False	NA	NA	False	NA	NA	NA	72446191	72446367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_72446200_72446400
PB_novel_06359_1	chr11	-	197	1	Intergenic	novelGene_7301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	294	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	2080	False	NA	NA	False	NA	NA	NA	72487886	72487689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_72487700_72487900
PB_novel_06360_0	chr11	+	166	1	Intergenic	novelGene_7302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAATCTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72496146	72496312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_72496100_72496300
PB_novel_06361_0	chr11	+	172	1	Intergenic	novelGene_7303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAGAAAGAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	72497061	72497233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_72497100_72497200
PB_novel_06363_0	chr11	+	3346	1	Genic_Genomic	ENSMUSG00000020794.14	novel	NA	NA	NA	NA	-28	-69540	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAGAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	72498080	72501426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_72498100_72501400
PB_novel_06366_1	chr11	-	176	1	Intergenic	novelGene_7305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAATATATATA	2547	False	NA	NA	False	NA	NA	NA	72538007	72537831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_72537800_72538000
PB_novel_06367_0	chr11	-	220	1	Intergenic	novelGene_7304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTGTAAAAAAAAAAAAAAA	7315	False	NA	NA	False	TATAAA	-9	NA	72533239	72533019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_72533000_72533200
PB_novel_06369_0	chr11	+	156	1	Intergenic	novelGene_7306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGGAAAAAAAAAGATAAAGA	NA	False	NA	NA	False	NA	NA	NA	72558554	72558710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_72558600_72558700
PB_novel_06370_0	chr11	+	173	1	Intergenic	novelGene_7307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	72569746	72569919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_72569700_72569900
PB_novel_06372_0	chr11	-	190	1	Intergenic	novelGene_7308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72608836	72608646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_72608600_72608800
PB_novel_06375_0	chr11	-	157	1	Intergenic	novelGene_7309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAATAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72649632	72649475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_72649500_72649600
PB_novel_06378_0	chr11	-	163	1	Intergenic	novelGene_7310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAATCAAAATAA	NA	False	NA	NA	False	NA	NA	NA	72671573	72671410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_72671400_72671600
PB_novel_06389_0	chr11	+	4440	1	NIC	ENSMUSG00000020783.15	novel	12106	13	NA	NA	8	-4417	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72938706	72943146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_72938700_72943100
PB_novel_06391_0	chr11	+	165	1	Intergenic	novelGene_7311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	471	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	7435	False	NA	NA	False	NA	NA	NA	73017245	73017410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_73017200_73017400
PB_novel_06392_0	chr11	-	6168	1	FSM	ENSMUSG00000050107.3	ENSMUST00000052140.3	2810	1	18	-3376	18	3376	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAGAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	73029102	73022934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_73022900_73029100
PB_novel_06393_0	chr11	+	137	1	Intergenic	novelGene_7312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73030090	73030227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_73030100_73030200
PB_novel_06396_0	chr11	-	177	1	Intergenic	novelGene_7313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAGATAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	73053750	73053573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_73053600_73053800
PB_novel_06400_0	chr11	-	176	1	Intergenic	novelGene_7314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73382916	73382740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_73382700_73382900
PB_novel_06402_0	chr11	-	2322	1	Genic_Genomic	ENSMUSG00000038807.20	novel	NA	NA	NA	NA	-10	-83397	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74413587	74411265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_74411300_74413600
PB_novel_06407_0	chr11	-	171	1	Intergenic	novelGene_7315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGTGCT	NA	False	NA	NA	False	NA	NA	NA	74526360	74526189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_74526200_74526400
PB_novel_06411_0	chr11	-	162	1	Intergenic	novelGene_7316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAACCCAAATTT	NA	False	NA	NA	False	NA	NA	NA	74597321	74597159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_74597200_74597300
PB_novel_06414_0	chr11	+	2886	1	Intergenic	novelGene_7317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCTCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74609181	74612067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_74609200_74612100
PB_novel_06416_0	chr11	+	171	1	Intergenic	novelGene_7318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAATAAATAAATAAATA	540	False	NA	NA	False	NA	NA	NA	74620235	74620406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_74620200_74620400
PB_novel_06419_0	chr11	+	173	1	Intergenic	novelGene_7319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGAAGATGA	NA	False	NA	NA	False	NA	NA	NA	74648441	74648614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_74648400_74648600
PB_novel_06420_0	chr11	-	156	1	Intergenic	novelGene_7320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	74685391	74685235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_74685200_74685400
PB_novel_06429_0	chr11	-	1201	1	Antisense	novelGene_ENSMUSG00000038335.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74794813	74793612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_74793600_74794800
PB_novel_06434_0	chr11	-	280	1	Intergenic	novelGene_7321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATACATAAAATAAATAAATC	3390	False	NA	NA	False	NA	NA	NA	74828837	74828557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_74828600_74828800
PB_novel_06435_0	chr11	+	174	1	Intergenic	novelGene_7322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATTTTTTTAAA	4828	False	NA	NA	False	NA	NA	NA	74836074	74836248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_74836100_74836200
PB_novel_06441_0	chr11	+	139	1	Intergenic	novelGene_7323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGCCAGAGCA	NA	False	NA	NA	False	NA	NA	NA	74871811	74871950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_74871800_74872000
PB_novel_06444_0	chr11	-	177	1	Intergenic	novelGene_7324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATGACC	NA	False	NA	NA	False	NA	NA	NA	74984603	74984426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_74984400_74984600
PB_novel_06447_0	chr11	+	158	1	Intergenic	novelGene_7325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAATAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	75004859	75005017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_75004900_75005000
PB_novel_06451_0	chr11	-	170	1	Intergenic	novelGene_7326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	75098060	75097890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75097900_75098100
PB_novel_06455_0	chr11	-	182	1	Intergenic	novelGene_7327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATAATTTATTT	NA	False	NA	NA	False	NA	NA	NA	75144632	75144450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75144400_75144600
PB_novel_06456_0	chr11	+	160	1	Intergenic	novelGene_7328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75164901	75165061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_75164900_75165100
PB_novel_06457_0	chr11	+	177	1	Intergenic	novelGene_7330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGACTATTC	NA	False	NA	NA	False	NA	NA	NA	75237841	75238018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_75237800_75238000
PB_novel_06460_0	chr11	+	169	1	Intergenic	novelGene_7329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATACCTTTAAAAA	743	False	NA	NA	False	NA	NA	NA	75194737	75194906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_75194700_75194900
PB_novel_06463_0	chr11	+	4649	1	Antisense	novelGene_ENSMUSG00000000751.14_AS_novelGene_ENSMUSG00002076300.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	117	False	NA	NA	False	NA	NA	NA	75206946	75211595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_75206900_75211600
PB_novel_06463_1	chr11	+	2475	2	Antisense	novelGene_ENSMUSG00002076300.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	117	False	NA	NA	False	NA	NA	NA	75206946	75211595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_75207062_75209235
PB_novel_06472_0	chr11	+	182	1	Intergenic	novelGene_7331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAGAGAAAGGGAGAG	NA	False	NA	NA	False	NA	NA	NA	75347022	75347204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_75347000_75347200
PB_novel_06484_0	chr11	+	172	1	Intergenic	novelGene_7332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAACAAACAAA	3500	False	NA	NA	False	NA	NA	NA	75419148	75419320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_75419100_75419300
PB_novel_06487_0	chr11	-	396	1	FSM	ENSMUSG00000081485.6	ENSMUST00000122170.2	192	1	-90	-114	-90	114	mono-exon	FALSE	NA	NA	NA	NA	NA	694	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATTCT	NA	False	NA	NA	False	AATAAA	-11	NA	75490870	75490474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr11_-_75490500_75490900
PB_novel_06489_1	chr11	-	179	1	Intergenic	novelGene_7333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75509399	75509220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75509200_75509400
PB_novel_06497_0	chr11	+	180	1	Intergenic	novelGene_7335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5316	False	NA	NA	False	NA	NA	NA	75582448	75582628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_75582400_75582600
PB_novel_06498_0	chr11	+	1520	1	NIC	ENSMUSG00000017774.20	novel	4547	32	NA	NA	24	-4595	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATCACCAAAAAAAAAA	8867	False	NA	NA	False	NA	NA	NA	75542359	75543879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_75542400_75543900
PB_novel_06500_0	chr11	+	188	1	Intergenic	novelGene_7334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAAAATGT	1611	False	NA	NA	False	NA	NA	NA	75565270	75565458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_75565300_75565500
PB_novel_06508_0	chr11	-	151	1	Intergenic	novelGene_7336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTTAAAAAAAAAGAAAAA	6367	False	NA	NA	False	NA	NA	NA	75588431	75588280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75588300_75588400
PB_novel_06510_0	chr11	-	171	1	Intergenic	novelGene_7337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	75606443	75606272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75606300_75606400
PB_novel_06513_0	chr11	-	172	1	Intergenic	novelGene_7338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	3958	False	NA	NA	False	NA	NA	NA	75626844	75626672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75626700_75626800
PB_novel_06515_0	chr11	+	4042	1	Intergenic	novelGene_7339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	52	False	NA	NA	False	NA	NA	NA	75631145	75635187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_75631100_75635200
PB_novel_06519_0	chr11	-	165	1	Intergenic	novelGene_7341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAACTTTAAAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	75649239	75649074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75649100_75649200
PB_novel_06520_0	chr11	-	171	1	Intergenic	novelGene_7342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	75652567	75652396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75652400_75652600
PB_novel_06521_0	chr11	+	181	1	Intergenic	novelGene_7343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75678578	75678759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_75678600_75678800
PB_novel_06522_0	chr11	-	180	1	Intergenic	novelGene_7344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAACTTTTGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75695896	75695716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75695700_75695900
PB_novel_06524_0	chr11	-	174	1	Intergenic	novelGene_7345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	75702373	75702199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75702200_75702400
PB_novel_06529_0	chr11	-	197	1	Intergenic	novelGene_7346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAGAAACAGTCTT	NA	False	NA	NA	False	NA	NA	NA	75865555	75865358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75865400_75865600
PB_novel_06531_0	chr11	+	189	1	Intergenic	novelGene_7347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTTTAAAAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	75888396	75888585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_75888400_75888600
PB_novel_06533_0	chr11	-	172	1	Intergenic	novelGene_7348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAGTA	NA	False	NA	NA	False	NA	NA	NA	75946564	75946392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75946400_75946600
PB_novel_06535_1	chr11	+	177	1	Intergenic	novelGene_7349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAATTTA	6864	False	NA	NA	False	NA	NA	NA	76018998	76019175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_76019000_76019200
PB_novel_06538_4	chr11	+	175	1	Intergenic	novelGene_7350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	76036610	76036785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_76036600_76036800
PB_novel_06538_5	chr11	+	168	1	Intergenic	novelGene_7352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76068608	76068776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_76068600_76068800
PB_novel_06539_0	chr11	+	169	1	Intergenic	novelGene_7351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	76040661	76040830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_76040700_76040800
PB_novel_06542_0	chr11	+	175	1	Intergenic	novelGene_7353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAAGAAAATGA	1289	False	NA	NA	False	NA	NA	NA	76090723	76090898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_76090700_76090900
PB_novel_06544_0	chr11	-	186	1	Intergenic	novelGene_7354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	76111670	76111484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_76111500_76111700
PB_novel_06554_0	chr11	+	176	1	Intergenic	novelGene_7355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGTTTAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	76291784	76291960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_76291800_76292000
PB_novel_06556_1	chr11	+	180	1	Intergenic	novelGene_7356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	290	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	76302255	76302435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_76302300_76302400
PB_novel_06562_0	chr11	+	177	1	Intergenic	novelGene_7357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	76366859	76367036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_76366900_76367000
PB_novel_06571_0	chr11	+	172	1	Intergenic	novelGene_7358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATCTTAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	76575407	76575579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_76575400_76575600
PB_novel_06573_0	chr11	+	174	1	Intergenic	novelGene_7359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	76638356	76638530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_76638400_76638500
PB_novel_06588_0	chr11	-	173	1	Intergenic	novelGene_7360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAAGC	3007	False	NA	NA	False	NA	NA	NA	77185890	77185717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_77185700_77185900
PB_novel_06590_0	chr11	+	182	1	Intergenic	novelGene_7361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAAGATACCTTTT	NA	False	NA	NA	False	NA	NA	NA	77246442	77246624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77246400_77246600
PB_novel_06591_0	chr11	+	175	1	Intergenic	novelGene_7362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	77280604	77280779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77280600_77280800
PB_novel_06599_0	chr11	+	169	1	Intergenic	novelGene_7367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	77543238	77543407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77543200_77543400
PB_novel_06600_0	chr11	+	187	1	Intergenic	novelGene_7370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	77587368	77587555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77587400_77587600
PB_novel_06601_0	chr11	-	176	1	Intergenic	novelGene_7363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAGAAAAGAAAA	3467	False	NA	NA	False	NA	NA	NA	77486565	77486389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_77486400_77486600
PB_novel_06603_1	chr11	+	179	1	Intergenic	novelGene_7364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77490150	77490329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77490200_77490300
PB_novel_06607_0	chr11	+	139	1	Intergenic	novelGene_7365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5386	False	NA	NA	False	NA	NA	NA	77512707	77512846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77512700_77512800
PB_novel_06611_0	chr11	+	179	1	Intergenic	novelGene_7366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATAAATCTT	9722	False	NA	NA	False	NA	NA	NA	77530907	77531086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77530900_77531100
PB_novel_06615_0	chr11	+	171	1	Intergenic	novelGene_7368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77554185	77554356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77554200_77554400
PB_novel_06616_2	chr11	-	1067	2	Antisense	novelGene_ENSMUSG00000037857.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	77590264	77588215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_77588264_77589245
PB_novel_06620_0	chr11	-	175	1	Intergenic	novelGene_7369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAATTAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	77572592	77572417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_77572400_77572600
PB_novel_06626_0	chr11	+	181	1	Intergenic	novelGene_7371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGGAATGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77629088	77629269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77629100_77629300
PB_novel_06628_0	chr11	-	146	1	Intergenic	novelGene_7372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	77647498	77647352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_77647400_77647500
PB_novel_06632_0	chr11	-	179	1	Intergenic	novelGene_7373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	5651	False	NA	NA	False	NA	NA	NA	77680342	77680163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_77680200_77680300
PB_novel_06639_1	chr11	+	177	1	Intergenic	novelGene_7374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGCAG	6831	False	NA	NA	False	NA	NA	NA	77809260	77809437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77809300_77809400
PB_novel_06640_0	chr11	+	182	1	Intergenic	novelGene_7375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	7065	False	NA	NA	False	NA	NA	NA	77818285	77818467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77818300_77818500
PB_novel_06645_0	chr11	+	179	1	Intergenic	novelGene_7376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	77916008	77916187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77916000_77916200
PB_novel_06646_0	chr11	+	2064	1	NIC	ENSMUSG00000061981.15	novel	2621	11	NA	NA	10	-20417	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	77928776	77930840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_77928800_77930800
PB_novel_06647_0	chr11	-	169	1	Intergenic	novelGene_7377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAGTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77932521	77932352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_77932400_77932500
PB_novel_06651_0	chr11	+	176	1	Intergenic	novelGene_7378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAATATTTATATAAGTA	451	False	NA	NA	False	NA	NA	NA	77954309	77954485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77954300_77954500
PB_novel_06652_0	chr11	+	175	1	Intergenic	novelGene_7379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77967269	77967444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77967300_77967400
PB_novel_06655_0	chr11	+	377	1	Intergenic	novelGene_7380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAAACAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	77972419	77972796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_77972400_77972800
PB_novel_06657_0	chr11	-	174	1	Intergenic	novelGene_7381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATT	NA	False	NA	NA	False	NA	NA	NA	77984606	77984432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_77984400_77984600
PB_novel_06664_0	chr11	-	175	1	Intergenic	novelGene_7382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	78028252	78028077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78028100_78028300
PB_novel_06665_0	chr11	-	158	1	Intergenic	novelGene_7383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	78033781	78033623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78033600_78033800
PB_novel_06671_0	chr11	+	175	1	Intergenic	novelGene_7384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGATCA	2525	False	NA	NA	False	NA	NA	NA	78075755	78075930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_78075800_78075900
PB_novel_06673_0	chr11	-	176	1	Intergenic	novelGene_7385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAGAAAATGCT	NA	False	NA	NA	False	NA	NA	NA	78083206	78083030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78083000_78083200
PB_novel_06676_0	chr11	+	180	1	Intergenic	novelGene_7386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAATTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	78130276	78130456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_78130300_78130500
PB_novel_06681_0	chr11	+	175	1	Intergenic	novelGene_7387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAAAAG	390	False	NA	NA	False	NA	NA	NA	78179385	78179560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_78179400_78179600
PB_novel_06686_0	chr11	-	163	1	Intergenic	novelGene_7388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGTAGTC	NA	False	NA	NA	False	NA	NA	NA	78212845	78212682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78212700_78212800
PB_novel_06687_0	chr11	+	178	1	Intergenic	novelGene_7389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	78218689	78218867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_78218700_78218900
PB_novel_06692_0	chr11	-	158	1	Intergenic	novelGene_7390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATATAAA	941	False	NA	NA	False	NA	NA	NA	78245268	78245110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78245100_78245300
PB_novel_06694_0	chr11	+	171	1	Intergenic	novelGene_7391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	78279100	78279271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_78279100_78279300
PB_novel_06704_0	chr11	+	5014	1	NIC	ENSMUSG00000001105.16	novel	1141	6	NA	NA	8	-18	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAGGCAAAAAAAAAAAAA	NA	False	NA	17	True	AATGAA	-24	NA	78427278	78432292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_78427300_78432300
PB_novel_06705_1	chr11	+	1958	1	Antisense	novelGene_ENSMUSG00000037278.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	78433402	78435360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_78433400_78435400
PB_novel_06709_0	chr11	+	181	1	Intergenic	novelGene_7392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAGAAAGATGTT	NA	False	NA	NA	False	NA	NA	NA	78464313	78464494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_78464300_78464500
PB_novel_06710_0	chr11	+	258	1	Intergenic	novelGene_7393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAATTTATTTAATAAA	NA	False	NA	NA	False	NA	NA	NA	78465084	78465342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_78465100_78465300
PB_novel_06715_0	chr11	-	176	1	Intergenic	novelGene_7394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACAAACACACAAAG	NA	False	NA	NA	False	NA	NA	NA	78596434	78596258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78596300_78596400
PB_novel_06717_0	chr11	-	176	1	Intergenic	novelGene_7395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	78635846	78635670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78635700_78635800
PB_novel_06719_0	chr11	-	176	1	Intergenic	novelGene_7396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	78679622	78679446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78679400_78679600
PB_novel_06721_1	chr11	-	161	1	Intergenic	novelGene_7398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	78797624	78797463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78797500_78797600
PB_novel_06722_0	chr11	-	161	1	Intergenic	novelGene_7397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	78782347	78782186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78782200_78782300
PB_novel_06724_1	chr11	-	176	1	Intergenic	novelGene_7399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	78804496	78804320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78804300_78804500
PB_novel_06726_0	chr11	-	198	1	Intergenic	novelGene_7400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAAATACTAAA	NA	False	NA	NA	False	NA	NA	NA	78872525	78872327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78872300_78872500
PB_novel_06728_0	chr11	-	174	1	Intergenic	novelGene_7401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	78891659	78891485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78891500_78891700
PB_novel_06730_0	chr11	-	175	1	Intergenic	novelGene_7402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAGAATTATTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	78895606	78895431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78895400_78895600
PB_novel_06733_0	chr11	-	173	1	Intergenic	novelGene_7403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAGAAAAAAGATAGAGG	9658	False	NA	NA	False	NA	NA	NA	78959737	78959564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_78959600_78959700
PB_novel_06734_0	chr11	+	178	1	Intergenic	novelGene_7404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	79038903	79039081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_79038900_79039100
PB_novel_06736_0	chr11	+	167	1	Intergenic	novelGene_7405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAGAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	79162579	79162746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_79162600_79162700
PB_novel_06741_0	chr11	-	178	1	Intergenic	novelGene_7406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATGAGAGAACATG	NA	False	NA	NA	False	NA	NA	NA	79204153	79203975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_79204000_79204200
PB_novel_06743_0	chr11	-	175	1	Intergenic	novelGene_7407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACAAAGTTTATT	NA	False	NA	NA	False	NA	NA	NA	79216222	79216047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_79216000_79216200
PB_novel_06744_0	chr11	+	165	1	Intergenic	novelGene_7408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	79217169	79217334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_79217200_79217300
PB_novel_06746_0	chr11	+	3504	1	Genic_Genomic	ENSMUSG00000020716.17	novel	NA	NA	NA	NA	-32	-2022	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	79230486	79233990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_79230500_79234000
PB_novel_06750_1	chr11	-	177	1	Intergenic	novelGene_7409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2491	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	79276659	79276482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_79276500_79276700
PB_novel_06757_0	chr11	+	165	1	Intergenic	novelGene_7410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAATTCTGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79497473	79497638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_79497500_79497600
PB_novel_06762_0	chr11	-	170	1	Intergenic	novelGene_7411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79606896	79606726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_79606700_79606900
PB_novel_06768_0	chr11	-	180	1	Intergenic	novelGene_7412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATCTTAAAAAAAAAAA	7916	False	NA	NA	False	NA	NA	NA	79667211	79667031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_79667000_79667200
PB_novel_06769_0	chr11	+	174	1	Intergenic	novelGene_7413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATGGAAGG	NA	False	NA	NA	False	NA	NA	NA	79734638	79734812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_79734600_79734800
PB_novel_06771_0	chr11	+	175	1	Intergenic	novelGene_7414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	79818665	79818840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_79818700_79818800
PB_novel_06778_0	chr11	+	160	1	Intergenic	novelGene_7415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79860918	79861078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_79860900_79861100
PB_novel_06780_0	chr11	+	156	1	Intergenic	novelGene_7416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAAGAAAACATT	NA	False	NA	NA	False	NA	NA	NA	79863164	79863320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_79863200_79863300
PB_novel_06784_1	chr11	-	172	1	Intergenic	novelGene_7417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAATTAAATAAATAAATCT	NA	False	NA	NA	False	NA	NA	NA	79878823	79878651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_79878700_79878800
PB_novel_06784_2	chr11	-	177	1	Intergenic	novelGene_7418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	79880060	79879883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_79879900_79880100
PB_novel_06789_0	chr11	-	4655	1	Antisense	novelGene_ENSMUSG00000017548.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79894725	79890070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_79890100_79894700
PB_novel_06790_0	chr11	-	1467	1	Antisense	novelGene_ENSMUSG00000017548.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACACACACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79904985	79903518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_79903500_79905000
PB_novel_06791_0	chr11	-	176	1	Intergenic	novelGene_7419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79907792	79907616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_79907600_79907800
PB_novel_06797_0	chr11	+	151	1	Intergenic	novelGene_7420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79960267	79960418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_79960300_79960400
PB_novel_06798_0	chr11	-	175	1	Intergenic	novelGene_7421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTTAAAAAAAAAAAAAGA	8547	False	NA	NA	False	NA	NA	NA	79965915	79965740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_79965700_79965900
PB_novel_06806_0	chr11	-	203	1	Intergenic	novelGene_7422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTTAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	80019247	80019044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80019000_80019200
PB_novel_06808_0	chr11	-	145	1	Intergenic	novelGene_7423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAATAAATAAATAAATCTAA	NA	False	NA	NA	False	NA	NA	NA	80022505	80022360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80022400_80022500
PB_novel_06812_0	chr11	-	173	1	Intergenic	novelGene_7424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTTAAAAAAATATCTCTA	NA	False	NA	NA	False	NA	NA	NA	80037409	80037236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80037200_80037400
PB_novel_06816_0	chr11	-	1127	1	Genic_Genomic	ENSMUSG00000086507.2	novel	NA	NA	NA	NA	-943	-18585	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80069398	80068271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_80068300_80069400
PB_novel_06818_0	chr11	-	160	1	Intergenic	novelGene_7425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAATTAAAAAAAAAAAAAAA	6871	False	NA	NA	False	NA	NA	NA	80074320	80074160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80074200_80074300
PB_novel_06825_3	chr11	+	189	1	Intergenic	novelGene_7427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	3013	False	NA	NA	False	NA	NA	NA	80144846	80145035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_80144800_80145000
PB_novel_06826_0	chr11	-	2226	1	Intergenic	novelGene_7426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80123401	80121175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80121200_80123400
PB_novel_06828_1	chr11	-	186	1	Intergenic	novelGene_7428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAACTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80170661	80170475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80170500_80170700
PB_novel_06828_2	chr11	-	166	2	Intergenic	novelGene_7429	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	12	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAGAAACAAACAAC	NA	False	NA	NA	False	NA	NA	NA	80179042	80177018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80177135_80178992
PB_novel_06831_0	chr11	-	388	1	Intergenic	novelGene_7430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAGAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	80177407	80177019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80177000_80177400
PB_novel_06832_0	chr11	+	182	1	Intergenic	novelGene_7431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAGTGAAGAGAG	5305	False	NA	NA	False	NA	NA	NA	80189217	80189399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_80189200_80189400
PB_novel_06834_0	chr11	+	177	1	Intergenic	novelGene_7432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	80249514	80249691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_80249500_80249700
PB_novel_06836_0	chr11	+	178	1	Intergenic	novelGene_7433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGGAAGGAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	80269447	80269625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_80269400_80269600
PB_novel_06840_0	chr11	-	2449	1	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-30	NA	80277321	80274872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_80274900_80277300
PB_novel_06841_2	chr11	-	934	1	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	543	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80295106	80294172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_80294200_80295100
PB_novel_06848_0	chr11	+	176	1	Intergenic	novelGene_7434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATGTGAGACC	2583	False	NA	NA	False	NA	NA	NA	80303460	80303636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_80303500_80303600
PB_novel_06855_0	chr11	-	176	1	Intergenic	novelGene_7435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAGAGAGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	80331777	80331601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80331600_80331800
PB_novel_06857_0	chr11	-	176	1	Intergenic	novelGene_7436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATGAG	NA	False	NA	NA	False	NA	NA	NA	80347500	80347324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80347300_80347500
PB_novel_06858_0	chr11	-	175	1	Intergenic	novelGene_7437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	159	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGTGTAT	NA	False	NA	NA	False	NA	NA	NA	80354849	80354674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80354700_80354800
PB_novel_06865_1	chr11	-	174	1	Intergenic	novelGene_7438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80515175	80515001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_80515000_80515200
PB_novel_06870_0	chr11	-	178	1	Intergenic	novelGene_7439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAAGTGC	NA	False	NA	NA	False	NA	NA	NA	82591646	82591468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_82591500_82591600
PB_novel_06880_0	chr11	-	173	1	Intergenic	novelGene_7440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	82719526	82719353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_82719400_82719500
PB_novel_06886_0	chr11	+	1633	2	Antisense	novelGene_ENSMUSG00000020696.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82756515	82758177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_82756634_82756662
PB_novel_06887_0	chr11	-	174	1	Intergenic	novelGene_7441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	82787066	82786892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_82786900_82787100
PB_novel_06901_0	chr11	-	164	1	Intergenic	novelGene_7442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAACAACAAAATAAAAA	8534	False	NA	NA	False	NA	NA	NA	83183660	83183496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_83183500_83183700
PB_novel_06902_0	chr11	-	248	1	Intergenic	novelGene_7443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACCTAAAAAAAAAAAAAA	7659	False	NA	NA	False	NA	NA	NA	83184535	83184287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_83184300_83184500
PB_novel_06903_0	chr11	-	132	1	Intergenic	novelGene_7444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCAAAAATCA	1515	False	NA	NA	False	NA	NA	NA	83190679	83190547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_83190500_83190700
PB_novel_06906_0	chr11	+	171	1	Intergenic	novelGene_7445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAAAACT	4883	False	NA	NA	False	NA	NA	NA	83200419	83200590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_83200400_83200600
PB_novel_06914_0	chr11	-	480	1	Intergenic	novelGene_7446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGTCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83381922	83381442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_83381400_83381900
PB_novel_06917_0	chr11	-	789	2	Intergenic	novelGene_7447	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGCAATAAAATAAAAA	4757	False	NA	-54	True	NA	NA	NA	83458252	83454524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_83455094_83458032
PB_novel_06926_0	chr11	+	178	1	Intergenic	novelGene_7448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	83841536	83841714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_83841500_83841700
PB_novel_06930_0	chr11	-	4765	1	Antisense	novelGene_ENSMUSG00000034940.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83931331	83926566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_83926600_83931300
PB_novel_06936_0	chr11	+	808	1	Intergenic	novelGene_7449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83991999	83992807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_83992000_83992800
PB_novel_06941_0	chr11	+	171	1	Intergenic	novelGene_7450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84117838	84118009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_84117800_84118000
PB_novel_06944_0	chr11	+	178	1	Intergenic	novelGene_7451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGTCAA	1144	False	NA	NA	False	NA	NA	NA	84196747	84196925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_84196700_84196900
PB_novel_06950_0	chr11	-	168	1	Intergenic	novelGene_7452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84310086	84309918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_84309900_84310100
PB_novel_06956_0	chr11	+	167	1	Intergenic	novelGene_7453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84401670	84401837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_84401700_84401800
PB_novel_06957_0	chr11	-	176	1	Intergenic	novelGene_7454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAACTAATTTAG	NA	False	NA	NA	False	NA	NA	NA	84565583	84565407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_84565400_84565600
PB_novel_06964_0	chr11	-	169	1	Intergenic	novelGene_7456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAATAAAATAA	1219	False	NA	NA	False	NA	NA	NA	84915135	84914966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_84915000_84915100
PB_novel_06974_0	chr11	+	359	2	Intergenic	novelGene_7455	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAACATTA	NA	False	NA	NA	False	NA	NA	NA	84867928	85084386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_84868108_85084206
PB_novel_06982_1	chr11	-	177	1	Intergenic	novelGene_7458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGTAAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	84960180	84960003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_84960000_84960200
PB_novel_06983_0	chr11	+	141	1	Intergenic	novelGene_7457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTGGGGAAAAAAAAAAAAAA	1227	False	NA	NA	False	NA	NA	NA	84946144	84946285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_84946100_84946300
PB_novel_06984_0	chr11	+	165	1	Intergenic	novelGene_7459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAAATAAATCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	84976140	84976305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_84976100_84976300
PB_novel_06985_0	chr11	+	184	1	Intergenic	novelGene_7460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTTTCACAT	NA	False	NA	NA	False	NA	NA	NA	84988782	84988966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_84988800_84989000
PB_novel_06988_0	chr11	+	177	1	Intergenic	novelGene_7461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGGTAAT	NA	False	NA	NA	False	NA	NA	NA	85015313	85015490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_85015300_85015500
PB_novel_06992_0	chr11	+	152	1	Intergenic	novelGene_7462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	85056603	85056755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_85056600_85056800
PB_novel_06993_0	chr11	-	167	1	Intergenic	novelGene_7463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	85057452	85057285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_85057300_85057500
PB_novel_06997_0	chr11	-	162	2	Intergenic	novelGene_7464	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	1	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATCAAA	NA	False	NA	NA	False	NA	NA	NA	85097004	85077809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_85077922_85096954
PB_novel_06998_0	chr11	+	178	1	Intergenic	novelGene_7465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAACATTA	NA	False	NA	NA	False	NA	NA	NA	85084208	85084386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_85084200_85084400
PB_novel_06999_0	chr11	-	174	1	Intergenic	novelGene_7466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAGAAAAGA	136	False	NA	NA	False	NA	NA	NA	85093988	85093814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_85093800_85094000
PB_novel_07000_0	chr11	-	158	1	Intergenic	novelGene_7467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	85097003	85096845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_85096800_85097000
PB_novel_07002_0	chr11	+	1851	1	Intergenic	novelGene_7468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7113	False	NA	NA	False	NA	NA	NA	85118196	85120047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_85118200_85120000
PB_novel_07007_0	chr11	-	2329	1	Intergenic	novelGene_7469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	4457	False	NA	NA	False	NA	NA	NA	85135498	85133169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_85133200_85135500
PB_novel_07014_0	chr11	-	176	1	Intergenic	novelGene_7470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGATAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85161290	85161114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_85161100_85161300
PB_novel_07016_0	chr11	+	177	1	Intergenic	novelGene_7471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	2778	False	NA	NA	False	NA	NA	NA	85173878	85174055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_85173900_85174100
PB_novel_07017_0	chr11	-	176	1	Intergenic	novelGene_7472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85191346	85191170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_85191200_85191300
PB_novel_07021_0	chr11	-	171	1	Intergenic	novelGene_7473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAAGTAGATTTGT	NA	False	NA	NA	False	NA	NA	NA	85214554	85214383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_85214400_85214600
PB_novel_07037_1	chr11	-	178	1	Intergenic	novelGene_7476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86072942	86072764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_86072800_86072900
PB_novel_07040_0	chr11	+	157	1	Intergenic	novelGene_7474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	85935017	85935174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_85935000_85935200
PB_novel_07041_0	chr11	+	2428	1	Intergenic	novelGene_7475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAATCAAATAAAAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	85976208	85978636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_85976200_85978600
PB_novel_07047_0	chr11	-	166	1	Intergenic	novelGene_7477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAATAAATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86145915	86145749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_86145700_86145900
PB_novel_07049_0	chr11	+	2808	1	Genic_Genomic	ENSMUSG00000085208.4	novel	NA	NA	NA	NA	102249	1996	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86194457	86197265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_86194500_86197300
PB_novel_07050_0	chr11	+	177	2	Antisense	novelGene_ENSMUSG00000034297.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAGAAAGAAAGA	7120	False	NA	NA	False	NA	NA	NA	86208554	86215729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_86208713_86215710
PB_novel_07058_0	chr11	+	176	1	Intergenic	novelGene_7478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	86345217	86345393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_86345200_86345400
PB_novel_07065_0	chr11	-	183	1	Intergenic	novelGene_7479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	86409174	86408991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_86409000_86409200
PB_novel_07066_0	chr11	+	169	1	Intergenic	novelGene_7480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAACTAT	NA	False	NA	NA	False	NA	NA	NA	86428130	86428299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_86428100_86428300
PB_novel_07067_0	chr11	+	171	1	Intergenic	novelGene_7481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	86429293	86429464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_86429300_86429500
PB_novel_07072_0	chr11	-	173	1	Intergenic	novelGene_7482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAAGCTG	5693	False	NA	NA	False	NA	NA	NA	86479563	86479390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_86479400_86479600
PB_novel_07078_0	chr11	+	180	1	Intergenic	novelGene_7483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTTA	416	False	NA	NA	False	NA	NA	NA	86545599	86545779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_86545600_86545800
PB_novel_07079_0	chr11	-	178	1	Intergenic	novelGene_7484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAGAGCAC	NA	False	NA	NA	False	NA	NA	NA	86551357	86551179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_86551200_86551400
PB_novel_07084_0	chr11	-	176	1	Intergenic	novelGene_7485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAACAAAAAAC	2611	False	NA	NA	False	NA	NA	NA	86668566	86668390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_86668400_86668600
PB_novel_07087_0	chr11	-	175	1	Intergenic	novelGene_7486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTAAGAGTGAATA	5393	False	NA	NA	False	NA	NA	NA	86678587	86678412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_86678400_86678600
PB_novel_07089_0	chr11	+	177	1	Intergenic	novelGene_7487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAGAGAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	86712666	86712843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_86712700_86712800
PB_novel_07090_0	chr11	-	168	1	Intergenic	novelGene_7488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTGAAGAAAAAAAA	9785	False	NA	NA	False	NA	NA	NA	86721026	86720858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_86720900_86721000
PB_novel_07091_0	chr11	+	177	1	Intergenic	novelGene_7489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAAAGTAAAATGT	NA	False	NA	NA	False	NA	NA	NA	86753232	86753409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_86753200_86753400
PB_novel_07096_0	chr11	-	173	1	Intergenic	novelGene_7490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACTTAAAAAAA	2217	False	NA	NA	False	NA	NA	NA	86873759	86873586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_86873600_86873800
PB_novel_07100_0	chr11	+	169	2	Intergenic	novelGene_7491	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTTTAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	86912169	87070528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_86912295_87070484
PB_novel_07108_0	chr11	-	172	1	Intergenic	novelGene_7492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATT	2878	False	NA	NA	False	NA	NA	NA	86990932	86990760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_86990800_86990900
PB_novel_07113_0	chr11	-	176	1	Intergenic	novelGene_7493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	7333	False	NA	NA	False	NA	NA	NA	87027076	87026900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_87026900_87027100
PB_novel_07116_0	chr11	-	1782	1	Intergenic	novelGene_7494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	9860	False	NA	NA	False	NA	NA	NA	87036061	87034279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_87034300_87036100
PB_novel_07121_0	chr11	-	176	1	Intergenic	novelGene_7495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	1726	False	NA	NA	False	NA	NA	NA	87085040	87084864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_87084900_87085000
PB_novel_07122_0	chr11	+	175	1	Intergenic	novelGene_7496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGATGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	87085467	87085642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_87085500_87085600
PB_novel_07132_0	chr11	+	168	1	Intergenic	novelGene_7498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAATAAAATAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87275876	87276044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_87275900_87276000
PB_novel_07133_0	chr11	-	174	1	Intergenic	novelGene_7497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACTGTG	NA	False	NA	NA	False	NA	NA	NA	87260223	87260049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_87260000_87260200
PB_novel_07136_0	chr11	+	172	1	Intergenic	novelGene_7499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	87287820	87287992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_87287800_87288000
PB_novel_07137_0	chr11	-	175	1	Intergenic	novelGene_7500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAGAGAGAGAGAGA	-2	True	NA	NA	False	NA	NA	NA	87294056	87293881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_87293900_87294100
PB_novel_07140_0	chr11	+	176	1	Intergenic	novelGene_7501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAAGTTATCC	NA	False	NA	NA	False	NA	NA	NA	87310983	87311159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_87311000_87311200
PB_novel_07141_0	chr11	+	135	1	Intergenic	novelGene_7502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	87314656	87314791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_87314700_87314800
PB_novel_07144_0	chr11	+	193	1	Intergenic	novelGene_7503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAATA	NA	False	NA	NA	False	NA	NA	NA	87326157	87326350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_87326200_87326400
PB_novel_07151_0	chr11	-	800	2	Antisense	novelGene_ENSMUSG00000010342.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	87344373	87343356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_87343868_87344084
PB_novel_07152_0	chr11	-	375	1	Intergenic	novelGene_7504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	87343739	87343364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_87343400_87343700
PB_novel_07170_0	chr11	+	175	1	Intergenic	novelGene_7505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTGAAACACTAC	NA	False	NA	NA	False	NA	NA	NA	87517059	87517234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_87517100_87517200
PB_novel_07172_1	chr11	-	165	1	Intergenic	novelGene_7507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAAG	7466	False	NA	NA	False	NA	NA	NA	87793634	87793469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_87793500_87793600
PB_novel_07175_0	chr11	-	176	1	Antisense	novelGene_ENSMUSG00000009350.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	87685342	87685166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_87685200_87685300
PB_novel_07176_0	chr11	-	175	1	Intergenic	novelGene_7506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAGATTGACTGATT	9209	False	NA	NA	False	NA	NA	NA	87791891	87791716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_87791700_87791900
PB_novel_07177_0	chr11	-	154	1	Intergenic	novelGene_7508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAATAAATAAATATA	NA	False	NA	NA	False	NA	NA	NA	87853853	87853699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_87853700_87853900
PB_novel_07179_0	chr11	+	184	1	Intergenic	novelGene_7509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCTTAAAAAAAAGTCTT	NA	False	NA	NA	False	NA	NA	NA	87884370	87884554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_87884400_87884600
PB_novel_07183_2	chr11	+	171	1	Intergenic	novelGene_7510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87929738	87929909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_87929700_87929900
PB_novel_07184_0	chr11	+	162	1	Intergenic	novelGene_7511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	81	False	NA	NA	False	NA	NA	NA	87932029	87932191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_87932000_87932200
PB_novel_07188_3	chr11	-	757	4	NNC	ENSMUSG00000086193.2	novel	440	2	NA	NA	-1568	-35807	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAGGAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	87940400	87938623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_-_87938856_87939311_87939498_87939865_87940040_87940235
PB_novel_07188_4	chr11	-	1778	1	Genic_Genomic	ENSMUSG00000086193.2	novel	NA	NA	NA	NA	-1568	-35806	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAGGAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	87940400	87938622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_87938600_87940400
PB_novel_07191_0	chr11	+	156	1	Intergenic	novelGene_7512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATATTAA	NA	False	NA	NA	False	NA	NA	NA	88040539	88040695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_88040500_88040700
PB_novel_07199_0	chr11	-	178	1	Intergenic	novelGene_7513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATACAACTGCAGA	4303	False	NA	NA	False	NA	NA	NA	88390370	88390192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_88390200_88390400
PB_novel_07203_0	chr11	-	164	1	Intergenic	novelGene_7514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATTAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	88484458	88484294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_88484300_88484500
PB_novel_07204_0	chr11	+	175	1	Intergenic	novelGene_7515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAGAGAGAGAATA	NA	False	NA	NA	False	NA	NA	NA	88492372	88492547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_88492400_88492500
PB_novel_07208_0	chr11	-	172	1	Intergenic	novelGene_7516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCTTAAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	88719018	88718846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_88718800_88719000
PB_novel_07210_0	chr11	+	1717	1	Antisense	novelGene_ENSMUSG00000018428.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GGAAAAAAAAAAAAAAAAAA	3463	False	NA	NA	False	NA	NA	NA	88731531	88733248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_88731500_88733200
PB_novel_07211_0	chr11	+	6541	1	Antisense	novelGene_ENSMUSG00000018428.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	6877	False	NA	NA	False	NA	NA	NA	88734945	88741486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_88734900_88741500
PB_novel_07216_0	chr11	-	172	1	Intergenic	novelGene_7520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAACAA	9396	False	NA	NA	False	NA	NA	NA	88854431	88854259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_88854300_88854400
PB_novel_07224_0	chr11	-	195	1	Intergenic	novelGene_7517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAAAAGAAAAGAA	3467	False	NA	NA	False	NA	NA	NA	88823826	88823631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_88823600_88823800
PB_novel_07227_0	chr11	+	160	1	Intergenic	novelGene_7518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	88842659	88842819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_88842700_88842800
PB_novel_07230_1	chr11	-	176	1	Intergenic	novelGene_7519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	367	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	88852778	88852602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_88852600_88852800
PB_novel_07232_0	chr11	+	1595	1	NIC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	1	-15424	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88864761	88866356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_88864800_88866400
PB_novel_07233_0	chr11	-	176	1	Intergenic	novelGene_7521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	7388	False	NA	NA	False	NA	NA	NA	88869701	88869525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_88869500_88869700
PB_novel_07234_0	chr11	-	176	1	Intergenic	novelGene_7522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGACAGTAA	7006	False	NA	NA	False	NA	NA	NA	88870083	88869907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_88869900_88870100
PB_novel_07235_0	chr11	+	177	1	Intergenic	novelGene_7523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	6749	False	NA	NA	False	NA	NA	NA	88871538	88871715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_88871500_88871700
PB_novel_07236_0	chr11	-	173	1	Genic_Genomic	ENSMUSG00000085152.2	novel	NA	NA	NA	NA	3457	125	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCTTAAAAAAATT	6406	False	NA	NA	False	NA	NA	NA	88883913	88883740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_88883700_88883900
PB_novel_07241_0	chr11	-	172	1	Intergenic	novelGene_7524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88936512	88936340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_88936300_88936500
PB_novel_07246_0	chr11	-	187	1	Intergenic	novelGene_7525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAATTATATAGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	88968015	88967828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_88967800_88968000
PB_novel_07249_0	chr11	+	154	1	Antisense	novelGene_ENSMUSG00000086919.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAAAAGAAGCA	551	False	NA	NA	False	NA	NA	NA	89016093	89016247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_89016100_89016200
PB_novel_07253_0	chr11	-	175	1	Intergenic	novelGene_7526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	89644223	89644048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_89644000_89644200
PB_novel_07258_0	chr11	+	4528	1	NIC	ENSMUSG00000020544.15	novel	1224	4	NA	NA	17	-1944	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90529015	90533543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_90529000_90533500
PB_novel_07261_0	chr11	+	1588	1	Antisense	novelGene_ENSMUSG00000020541.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGGAAAAAAAAAAAAAAA	4312	False	NA	NA	False	NA	NA	NA	90553167	90554755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_90553200_90554800
PB_novel_07261_1	chr11	+	2228	2	Antisense	novelGene_ENSMUSG00000020541.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGGAAAAAAAAAAAAAAA	125	False	NA	NA	False	NA	NA	NA	90548980	90554755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_90549037_90552583
PB_novel_07266_0	chr11	-	174	1	Intergenic	novelGene_7527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAGAGAGAAGTCAG	NA	False	NA	NA	False	NA	NA	NA	91437886	91437712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_91437700_91437900
PB_novel_07272_0	chr11	-	163	1	Intergenic	novelGene_7528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAGATTAAAAAG	NA	False	NA	NA	False	NA	NA	NA	93779026	93778863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_93778900_93779000
PB_novel_07292_0	chr11	+	173	1	Intergenic	novelGene_7529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATTCAAGT	NA	False	NA	NA	False	NA	NA	NA	94093684	94093857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_94093700_94093900
PB_novel_07295_0	chr11	+	177	1	Intergenic	novelGene_7530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	94108591	94108768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_94108600_94108800
PB_novel_07297_0	chr11	+	1832	1	Antisense	novelGene_ENSMUSG00000020863.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCCTGTCTCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94189937	94191769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_94189900_94191800
PB_novel_07302_0	chr11	+	173	1	Intergenic	novelGene_7531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94198161	94198334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_94198200_94198300
PB_novel_07305_0	chr11	+	177	1	Intergenic	novelGene_7532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAAGA	1141	False	NA	NA	False	NA	NA	NA	94215973	94216150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_94216000_94216200
PB_novel_07306_0	chr11	-	132	1	Intergenic	novelGene_7533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94216754	94216622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_94216600_94216800
PB_novel_07311_0	chr11	-	175	1	Intergenic	novelGene_7534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAAGTTAATTTA	6688	False	NA	NA	False	NA	NA	NA	94436588	94436413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_94436400_94436600
PB_novel_07316_0	chr11	+	1403	1	NIC	ENSMUSG00000020869.9	novel	2837	7	NA	NA	-20	-4056	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94520619	94522022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_94520600_94522000
PB_novel_07320_0	chr11	+	182	1	Intergenic	novelGene_7536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTGTTTAAAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	94552767	94552949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_94552800_94552900
PB_novel_07324_0	chr11	+	145	1	Intergenic	novelGene_7537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTATGTTTAATGATAAATA	NA	False	NA	NA	False	NA	NA	NA	94591190	94591335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_94591200_94591300
PB_novel_07330_0	chr11	+	187	1	Intergenic	novelGene_7538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATATAAAAAATAAAGAAAGA	7523	False	NA	NA	False	NA	NA	NA	94749653	94749840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_94749700_94749800
PB_novel_07332_0	chr11	+	171	1	Intergenic	novelGene_7539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGCCGG	NA	False	NA	NA	False	NA	NA	NA	94799485	94799656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_94799500_94799700
PB_novel_07334_0	chr11	+	172	1	Intergenic	novelGene_7540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	94860787	94860959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_94860800_94861000
PB_novel_07337_0	chr11	+	175	1	Intergenic	novelGene_7541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	388	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	264	False	NA	NA	False	NA	NA	NA	94946081	94946256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_94946100_94946300
PB_novel_07347_0	chr11	+	160	2	Intergenic	novelGene_7542	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAATAAAATCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	95176151	95214302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_95176207_95214197
PB_novel_07348_0	chr11	+	175	2	Antisense	novelGene_ENSMUSG00000038909.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGGCAAAAT	NA	False	NA	NA	False	NA	NA	NA	95176150	95179121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_95176261_95179056
PB_novel_07352_0	chr11	-	189	1	Intergenic	novelGene_7543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCATCCAAGAGCAACACAG	NA	False	NA	NA	False	NA	NA	NA	95203397	95203208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95203200_95203400
PB_novel_07356_0	chr11	+	169	1	Intergenic	novelGene_7544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95273456	95273625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_95273500_95273600
PB_novel_07358_0	chr11	-	1868	1	Antisense	novelGene_ENSMUSG00000020873.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGGAGAAAAAAAAAAAGTCA	NA	False	NA	NA	False	NA	NA	NA	95278250	95276382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_95276400_95278200
PB_novel_07362_0	chr11	+	175	1	Intergenic	novelGene_7545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAACAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	95330721	95330896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_95330700_95330900
PB_novel_07364_0	chr11	-	165	1	Intergenic	novelGene_7546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCTTTAA	NA	False	NA	NA	False	NA	NA	NA	95437346	95437181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95437200_95437300
PB_novel_07371_0	chr11	-	183	1	Intergenic	novelGene_7547	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	95540856	95540673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95540700_95540900
PB_novel_07379_0	chr11	-	176	1	Intergenic	novelGene_7548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	95630331	95630155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95630200_95630300
PB_novel_07380_0	chr11	+	196	1	Intergenic	novelGene_7549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAAAGG	4682	False	NA	NA	False	NA	NA	NA	95671679	95671875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_95671700_95671900
PB_novel_07381_0	chr11	+	163	1	Intergenic	novelGene_7550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAATCTTAAAAACC	6244	False	NA	NA	False	NA	NA	NA	95673241	95673404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_95673200_95673400
PB_novel_07391_0	chr11	+	2523	1	Intergenic	novelGene_7551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	6425	False	NA	NA	False	NA	NA	NA	95776180	95778703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_95776200_95778700
PB_novel_07392_0	chr11	-	176	1	Intergenic	novelGene_7552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCTTTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95780795	95780619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95780600_95780800
PB_novel_07393_0	chr11	-	179	1	Intergenic	novelGene_7553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAAAACAAAACATT	NA	False	NA	NA	False	NA	NA	NA	95781585	95781406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95781400_95781600
PB_novel_07394_0	chr11	-	176	1	Intergenic	novelGene_7554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	95784551	95784375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95784400_95784600
PB_novel_07399_0	chr11	+	289	1	Intergenic	novelGene_7555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAATAAATAAATC	4061	False	NA	NA	False	NA	NA	NA	95829291	95829580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_95829300_95829600
PB_novel_07403_0	chr11	-	174	1	Intergenic	novelGene_7556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	1913	False	NA	NA	False	NA	NA	NA	95840555	95840381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95840400_95840600
PB_novel_07404_0	chr11	-	170	1	Intergenic	novelGene_7557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAAAAAGCC	276	False	NA	NA	False	NA	NA	NA	95842192	95842022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95842000_95842200
PB_novel_07406_0	chr11	+	2901	1	Antisense	novelGene_ENSMUSG00000013415.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGGT	4347	False	NA	NA	False	NA	NA	NA	95848217	95851118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_95848200_95851100
PB_novel_07408_1	chr11	+	2517	15	NNC	ENSMUSG00000099928.2	novel	422	3	NA	NA	-42823	-2072	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATGGAG	NA	False	NA	NA	False	AATAAA	-10	NA	95853891	95896809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_95854419_95857002_95857113_95857472_95857606_95858372_95858450_95859188_95859309_95859624_95859748_95860674_95860810_95861493_95861617_95863869_95864008_95864766_95865047_95866085_95866152_95870109_95870158_95870444_95870495_95895047_95895109_95896283
PB_novel_07414_0	chr11	+	177	1	Intergenic	novelGene_7558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95904301	95904478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_95904300_95904500
PB_novel_07420_0	chr11	-	171	1	Intergenic	novelGene_7559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAACTGGG	NA	False	NA	NA	False	NA	NA	NA	95936905	95936734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95936700_95936900
PB_novel_07421_0	chr11	-	177	1	Intergenic	novelGene_7560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACTATTAAT	NA	False	NA	NA	False	NA	NA	NA	95945032	95944855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95944900_95945000
PB_novel_07422_0	chr11	+	179	1	Intergenic	novelGene_7561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGACTG	NA	False	NA	NA	False	NA	NA	NA	95946220	95946399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_95946200_95946400
PB_novel_07422_1	chr11	+	173	2	Antisense	novelGene_ENSMUSG00000064795.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAATAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95946219	96007907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_95946367_96007881
PB_novel_07423_0	chr11	-	174	1	Intergenic	novelGene_7562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAGGAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	95947355	95947181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95947200_95947400
PB_novel_07430_0	chr11	-	172	1	Intergenic	novelGene_7563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	95982802	95982630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95982600_95982800
PB_novel_07431_0	chr11	-	177	1	Intergenic	novelGene_7564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAGAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	95983451	95983274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_95983300_95983500
PB_novel_07432_0	chr11	+	176	1	Intergenic	novelGene_7565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAAATGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	95984635	95984811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_95984600_95984800
PB_novel_07440_0	chr11	-	173	1	Intergenic	novelGene_7566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	96125193	96125020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_96125000_96125200
PB_novel_07442_0	chr11	+	3316	1	NIC	ENSMUSG00000078706.5	novel	1172	3	NA	NA	-43	-6777	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8771	False	NA	NA	False	NA	NA	NA	96142426	96145742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_96142400_96145700
PB_novel_07447_0	chr11	-	176	1	Intergenic	novelGene_7567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAGAAATA	NA	False	NA	NA	False	NA	NA	NA	96264226	96264050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_96264000_96264200
PB_novel_07449_0	chr11	+	176	1	Intergenic	novelGene_7568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATATTTAAAAAACCG	NA	False	NA	NA	False	NA	NA	NA	96391635	96391811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_96391600_96391800
PB_novel_07453_0	chr11	+	176	1	Intergenic	novelGene_7569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGGAAAAA	2163	False	NA	NA	False	NA	NA	NA	96605940	96606116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_96605900_96606100
PB_novel_07456_0	chr11	+	175	1	Intergenic	novelGene_7570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAGACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96668959	96669134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_96669000_96669100
PB_novel_07459_0	chr11	-	171	1	Intergenic	novelGene_7571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAACAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	96690533	96690362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_96690400_96690500
PB_novel_07463_0	chr11	-	170	1	Intergenic	novelGene_7572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96723126	96722956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_96723000_96723100
PB_novel_07475_0	chr11	+	187	1	Antisense	novelGene_ENSMUSG00000085307.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATAAATAAA	5053	False	NA	NA	False	NA	NA	NA	96812850	96813037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_96812800_96813000
PB_novel_07477_0	chr11	+	175	1	Intergenic	novelGene_7573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAACAAAAGCCCC	2259	False	NA	NA	False	NA	NA	NA	96857522	96857697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_96857500_96857700
PB_novel_07478_1	chr11	-	2448	2	Genic_Genomic	ENSMUSG00000018678.14	novel	3055	7	NA	NA	45	-20958	multi-exon	FALSE	non_canonical	1	5	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96868492	96866002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_-_96866948_96866989
PB_novel_07486_0	chr11	+	176	1	Intergenic	novelGene_7574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TATTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96943987	96944163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_96944000_96944200
PB_novel_07488_0	chr11	+	157	1	Intergenic	novelGene_7575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAATAAAAAAAAAAATTAA	2048	False	NA	NA	False	NA	NA	NA	96969074	96969231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_96969100_96969200
PB_novel_07492_0	chr11	+	175	1	Intergenic	novelGene_7576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	97002703	97002878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97002700_97002900
PB_novel_07496_2	chr11	+	5556	18	NNC	ENSMUSG00000084936.2	novel	466	2	NA	NA	15	20985	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGCT	963	False	NA	NA	False	NA	NA	NA	97051830	97073486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr11_+_97053508_97054178_97054343_97054741_97055657_97055778_97055923_97056201_97056307_97056869_97056958_97058377_97058523_97059692_97059763_97059973_97060122_97060727_97060858_97062346_97062542_97063880_97064107_97066577_97066676_97068070_97068183_97069095_97069181_97069688_97069754_97071269_97071422_97072449
PB_novel_07500_0	chr11	+	178	1	Intergenic	novelGene_7577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	97081449	97081627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97081400_97081600
PB_novel_07505_1	chr11	-	176	1	Intergenic	novelGene_7589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	97262253	97262077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97262100_97262300
PB_novel_07506_4	chr11	+	173	1	Intergenic	novelGene_7578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97115759	97115932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97115800_97115900
PB_novel_07509_0	chr11	+	178	1	Intergenic	novelGene_7579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	97127780	97127958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97127800_97128000
PB_novel_07510_0	chr11	-	176	1	Intergenic	novelGene_7580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAAATAGAAAAAT	4499	False	NA	NA	False	NA	NA	NA	97145555	97145379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97145400_97145600
PB_novel_07516_0	chr11	-	176	1	Intergenic	novelGene_7581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	97189693	97189517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97189500_97189700
PB_novel_07520_0	chr11	+	171	1	Intergenic	novelGene_7582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTCCCTAT	NA	False	NA	NA	False	NA	NA	NA	97199314	97199485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97199300_97199500
PB_novel_07523_0	chr11	-	172	1	Intergenic	novelGene_7583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	1610	False	NA	NA	False	NA	NA	NA	97205399	97205227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97205200_97205400
PB_novel_07525_0	chr11	+	168	1	Intergenic	novelGene_7584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97209528	97209696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97209500_97209700
PB_novel_07528_0	chr11	-	174	1	Intergenic	novelGene_7585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97213767	97213593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97213600_97213800
PB_novel_07530_0	chr11	+	176	1	Intergenic	novelGene_7586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	97232688	97232864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97232700_97232900
PB_novel_07532_0	chr11	-	165	1	Intergenic	novelGene_7587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTCTTTAAATAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	97249870	97249705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97249700_97249900
PB_novel_07534_0	chr11	-	152	1	Intergenic	novelGene_7591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATAAATAAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	97385018	97384866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97384900_97385000
PB_novel_07534_1	chr11	-	171	2	Intergenic	novelGene_7588	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97385017	97260683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97260732_97384894
PB_novel_07539_0	chr11	-	176	1	Intergenic	novelGene_7590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9375	False	NA	NA	False	NA	NA	NA	97300951	97300775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97300800_97301000
PB_novel_07552_0	chr11	+	176	1	Intergenic	novelGene_7592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97511287	97511463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97511300_97511500
PB_novel_07559_0	chr11	-	333	1	Intergenic	novelGene_7593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACAAAACAAAACA	9010	False	NA	NA	False	NA	NA	NA	97524151	97523818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97523800_97524200
PB_novel_07562_1	chr11	-	169	1	Intergenic	novelGene_7595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CTAAAAAAAAAAAAAAAAAA	8404	False	NA	NA	False	NA	NA	NA	97538809	97538640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97538600_97538800
PB_novel_07563_0	chr11	+	171	1	Intergenic	novelGene_7594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	97537590	97537761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97537600_97537800
PB_novel_07569_0	chr11	+	2592	1	Antisense	novelGene_ENSMUSG00000018537.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97590653	97593245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_97590700_97593200
PB_novel_07581_0	chr11	+	177	1	Intergenic	novelGene_7596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	97681829	97682006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97681800_97682000
PB_novel_07588_7	chr11	-	172	1	Intergenic	novelGene_7599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATAAAATAA	9898	False	NA	NA	False	NA	NA	NA	97771818	97771646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97771600_97771800
PB_novel_07591_0	chr11	-	175	1	Intergenic	novelGene_7597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	97756427	97756252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97756300_97756400
PB_novel_07593_0	chr11	-	170	1	Intergenic	novelGene_7598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAATTAAAAAAAAAA	9879	False	NA	NA	False	NA	NA	NA	97766174	97766004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_97766000_97766200
PB_novel_07596_0	chr11	+	2402	1	Genic_Genomic	ENSMUSG00000086917.2	novel	NA	NA	NA	NA	-4	-6820	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	27	False	NA	NA	False	NA	NA	NA	97775415	97777817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr11_+_97775400_97777800
PB_novel_07609_0	chr11	+	172	1	Intergenic	novelGene_7600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3883	False	NA	NA	False	NA	NA	NA	97925328	97925500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97925300_97925500
PB_novel_07615_0	chr11	+	175	1	Intergenic	novelGene_7601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97984234	97984409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_97984200_97984400
PB_novel_07616_0	chr11	+	3096	1	Antisense	novelGene_ENSMUSG00000020883.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATTAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97989238	97992334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_97989200_97992300
PB_novel_07623_0	chr11	+	1571	1	Intergenic	novelGene_7602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	98049613	98051184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_98049600_98051200
PB_novel_07629_0	chr11	-	180	1	Intergenic	novelGene_7603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATATTC	NA	False	NA	NA	False	NA	NA	NA	98069019	98068839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_98068800_98069000
PB_novel_07634_0	chr11	-	209	1	Intergenic	novelGene_7604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAAAAGTAGG	608	False	NA	NA	False	NA	NA	NA	98100905	98100696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_98100700_98100900
PB_novel_07636_0	chr11	+	2707	2	Intergenic	novelGene_7605	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98117414	98120331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_98119168_98119377
PB_novel_07644_0	chr11	+	174	1	Intergenic	novelGene_7606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98159974	98160148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_98160000_98160100
PB_novel_07660_0	chr11	+	171	1	Intergenic	novelGene_7607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATATTTAAAA	2127	False	NA	NA	False	NA	NA	NA	98648890	98649061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_98648900_98649100
PB_novel_07670_0	chr11	-	171	1	Intergenic	novelGene_7608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	98753106	98752935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_98752900_98753100
PB_novel_07673_0	chr11	-	159	1	Intergenic	novelGene_7609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4514	False	NA	NA	False	NA	NA	NA	98770862	98770703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_98770700_98770900
PB_novel_07677_0	chr11	-	175	1	Intergenic	novelGene_7610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	98837700	98837525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_98837500_98837700
PB_novel_07680_0	chr11	+	136	1	Intergenic	novelGene_7611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98881231	98881367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_98881200_98881400
PB_novel_07681_0	chr11	+	177	1	Intergenic	novelGene_7612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCTATGAACA	6188	False	NA	NA	False	NA	NA	NA	98897380	98897557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_98897400_98897600
PB_novel_07683_1	chr11	-	169	1	Antisense	novelGene_ENSMUSG00000017493.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAATTAAAAAAACA	NA	False	NA	-2	True	NA	NA	NA	98945089	98944920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_98944900_98945100
PB_novel_07694_0	chr11	+	163	1	Intergenic	novelGene_7613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAATAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99102114	99102277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_99102100_99102300
PB_novel_07697_0	chr11	-	175	1	Intergenic	novelGene_7614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATAAATAGATAG	2909	False	NA	NA	False	NA	NA	NA	99142177	99142002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_99142000_99142200
PB_novel_07713_0	chr11	-	148	1	Intergenic	novelGene_7615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATCAAAAAAA	8661	False	NA	NA	False	NA	NA	NA	100195630	100195482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_100195500_100195600
PB_novel_07717_0	chr11	+	170	1	Intergenic	novelGene_7616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TATTAAAAAAAAAATAAAAA	7337	False	NA	NA	False	NA	NA	NA	100214090	100214260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_100214100_100214300
PB_novel_07721_0	chr11	-	135	1	Intergenic	novelGene_7617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	100289943	100289808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_100289800_100289900
PB_novel_07722_0	chr11	-	176	1	Intergenic	novelGene_7618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	100309244	100309068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_100309100_100309200
PB_novel_07726_0	chr11	+	4634	1	Intergenic	novelGene_7619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100347862	100352496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_100347900_100352500
PB_novel_07735_0	chr11	+	2898	1	Intergenic	novelGene_7620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATCAAAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	100499333	100502231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_100499300_100502200
PB_novel_07745_0	chr11	+	174	1	Intergenic	novelGene_7621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	554	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100704051	100704225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_100704100_100704200
PB_novel_07749_0	chr11	+	8495	1	Intergenic	novelGene_7622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAGGAGGAGG	NA	False	NA	NA	False	NA	NA	NA	100809688	100818183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_100809700_100818200
PB_novel_07751_0	chr11	+	160	1	Intergenic	novelGene_7623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAATACATAAATAA	7407	False	NA	NA	False	NA	NA	NA	100869574	100869734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_100869600_100869700
PB_novel_07752_0	chr11	-	176	1	Intergenic	novelGene_7624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	3761	False	NA	NA	False	NA	NA	NA	100878398	100878222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_100878200_100878400
PB_novel_07757_0	chr11	+	2535	1	Intergenic	novelGene_7625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100998291	101000826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_100998300_101000800
PB_novel_07759_0	chr11	-	176	1	Intergenic	novelGene_7626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	101035318	101035142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_101035100_101035300
PB_novel_07761_0	chr11	+	176	1	Intergenic	novelGene_7627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2770	False	NA	NA	False	NA	NA	NA	101047851	101048027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101047900_101048000
PB_novel_07768_0	chr11	-	1326	1	Antisense	novelGene_ENSMUSG00000078656.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101149218	101147892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_101147900_101149200
PB_novel_07773_0	chr11	+	2167	1	NIC	ENSMUSG00000078651.9	novel	2543	4	NA	NA	2428	-21	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAATTTTAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	101218340	101220507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101218300_101220500
PB_novel_07774_0	chr11	+	138	1	Intergenic	novelGene_7628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101225796	101225934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101225800_101225900
PB_novel_07782_0	chr11	+	176	1	Intergenic	novelGene_7629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	1906	False	NA	NA	False	NA	NA	NA	101318828	101319004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101318800_101319000
PB_novel_07784_0	chr11	+	199	1	Intergenic	novelGene_7630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTACTATTAAAAAAAAAAA	6006	False	NA	NA	False	NA	NA	NA	101329054	101329253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101329100_101329300
PB_novel_07786_0	chr11	+	3078	1	NIC	ENSMUSG00000063316.14	novel	614	5	NA	NA	-6	-20	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATTAAAAAAAAAAAAA	2375	False	NA	42	True	NA	NA	NA	101333257	101336335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_101333300_101336300
PB_novel_07787_0	chr11	+	178	1	Intergenic	novelGene_7631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAATAAATAA	268	False	NA	NA	False	NA	NA	NA	101338037	101338215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101338000_101338200
PB_novel_07789_0	chr11	-	179	1	Intergenic	novelGene_7632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAACAAACAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	101344360	101344181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_101344200_101344400
PB_novel_07790_0	chr11	-	172	1	Intergenic	novelGene_7633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGAATAAATAAAACTTA	NA	False	NA	NA	False	NA	NA	NA	101360695	101360523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_101360500_101360700
PB_novel_07791_0	chr11	+	180	1	Intergenic	novelGene_7634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAATGATA	2093	False	NA	NA	False	NA	NA	NA	101372811	101372991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101372800_101373000
PB_novel_07800_2	chr11	+	184	1	Intergenic	novelGene_7635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAGAAAAA	9730	False	NA	NA	False	NA	NA	NA	101458175	101458359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101458200_101458400
PB_novel_07803_0	chr11	-	1890	1	Antisense	novelGene_ENSMUSG00000034947.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101475663	101473773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_101473800_101475700
PB_novel_07809_0	chr11	+	154	1	Intergenic	novelGene_7636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATGAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	101511887	101512041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101511900_101512000
PB_novel_07815_1	chr11	+	170	1	Intergenic	novelGene_7637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	101527653	101527823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101527700_101527800
PB_novel_07817_0	chr11	+	176	1	Intergenic	novelGene_7638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGACAGCTGTATCA	NA	False	NA	NA	False	NA	NA	NA	101535764	101535940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101535800_101535900
PB_novel_07820_0	chr11	-	183	1	Intergenic	novelGene_7639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAATAAATAAGAGTAATTA	NA	False	NA	NA	False	NA	NA	NA	101567260	101567077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_101567100_101567300
PB_novel_07822_0	chr11	+	176	1	Intergenic	novelGene_7640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	101573125	101573301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101573100_101573300
PB_novel_07824_0	chr11	-	325	1	Intergenic	novelGene_7641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	5298	False	NA	NA	False	NA	NA	NA	101593967	101593642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_101593600_101594000
PB_novel_07827_0	chr11	+	169	1	Intergenic	novelGene_7642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	4780	False	NA	NA	False	NA	NA	NA	101609623	101609792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_101609600_101609800
PB_novel_07839_0	chr11	-	313	1	Intergenic	novelGene_7643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTTAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	102035370	102035057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_102035100_102035400
PB_novel_07840_0	chr11	-	180	1	Intergenic	novelGene_7644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAACTGAAAGAAA	2526	False	NA	NA	False	NA	NA	NA	102049169	102048989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_102049000_102049200
PB_novel_07841_0	chr11	+	184	1	Antisense	novelGene_ENSMUSG00000020922.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAGAAAAAA	4016	False	NA	NA	False	AATAAA	-25	NA	102054197	102054381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_102054200_102054400
PB_novel_07849_0	chr11	-	172	1	Intergenic	novelGene_7645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	586	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAACAAAAAAA	6288	False	NA	NA	False	NA	NA	NA	102171431	102171259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_102171300_102171400
PB_novel_07854_7	chr11	+	2761	20	Antisense	novelGene_ENSMUSG00000020923.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.669890634808308	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATT	4980	False	NA	NA	False	NA	NA	NA	102197350	102207584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_102197593_102197681_102197825_102197903_102197977_102198069_102198118_102198774_102198961_102199048_102199146_102199526_102199641_102199726_102199875_102200221_102200378_102200478_102200598_102200699_102200736_102201016_102201158_102201267_102201402_102201750_102201862_102202204_102202326_102202578_102202645_102204723_102204880_102204964_102205044_102205684_102205868_102207176
PB_novel_07859_1	chr11	-	175	1	Intergenic	novelGene_7646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	8520	False	NA	NA	False	NA	NA	NA	102216277	102216102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_102216100_102216300
PB_novel_07860_0	chr11	+	176	1	Intergenic	novelGene_7647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102216345	102216521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_102216300_102216500
PB_novel_07861_1	chr11	+	177	1	Intergenic	novelGene_7649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAATAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	102230864	102231041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_102230900_102231000
PB_novel_07863_0	chr11	-	176	1	Intergenic	novelGene_7648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	308	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	7865	False	NA	NA	False	NA	NA	NA	102222281	102222105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_102222100_102222300
PB_novel_07866_0	chr11	+	177	1	Intergenic	novelGene_7650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3660	False	NA	NA	False	NA	NA	NA	102280479	102280656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_102280500_102280700
PB_novel_07869_0	chr11	+	174	1	Intergenic	novelGene_7651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	102307136	102307310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_102307100_102307300
PB_novel_07880_0	chr11	+	157	1	Intergenic	novelGene_7652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATTAAAAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	102532678	102532835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_102532700_102532800
PB_novel_07882_0	chr11	+	176	1	Intergenic	novelGene_7653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGGTACACA	NA	False	NA	NA	False	NA	NA	NA	102543756	102543932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_102543800_102543900
PB_novel_07886_0	chr11	+	177	1	Intergenic	novelGene_7654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102647741	102647918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_102647700_102647900
PB_novel_07891_1	chr11	-	6060	1	Intergenic	novelGene_7655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102709579	102703519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_102703500_102709600
PB_novel_07899_0	chr11	-	165	1	Intergenic	novelGene_7656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATAAATCTTTAAAA	8259	False	NA	NA	False	NA	NA	NA	102811415	102811250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_102811200_102811400
PB_novel_07915_0	chr11	+	175	1	Intergenic	novelGene_7657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAATTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103011818	103011993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_103011800_103012000
PB_novel_07920_0	chr11	+	1334	1	Intergenic	novelGene_7658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	103280239	103281573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_103280200_103281600
PB_novel_07922_0	chr11	+	165	1	Intergenic	novelGene_7659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	103297126	103297291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_103297100_103297300
PB_novel_07923_0	chr11	-	175	1	Intergenic	novelGene_7660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	103304868	103304693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_103304700_103304900
PB_novel_07926_0	chr11	+	171	1	Intergenic	novelGene_7661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGGTAAAAA	NA	False	NA	NA	False	NA	NA	NA	103587485	103587656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_103587500_103587700
PB_novel_07929_0	chr11	-	176	1	Intergenic	novelGene_7662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103725318	103725142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_103725100_103725300
PB_novel_07935_0	chr11	+	175	1	Intergenic	novelGene_7663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	103840658	103840833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_103840700_103840800
PB_novel_07937_1	chr11	+	178	1	Intergenic	novelGene_7664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	321	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	103846372	103846550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_103846400_103846600
PB_novel_07939_0	chr11	-	175	1	Intergenic	novelGene_7665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATGGTTACCAA	NA	False	NA	NA	False	NA	NA	NA	103856871	103856696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_103856700_103856900
PB_novel_07948_0	chr11	+	3423	2	Intergenic	novelGene_7666	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	104202877	104206500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_104203538_104203737
PB_novel_07960_0	chr11	+	175	1	Intergenic	novelGene_7667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTCAACCCT	5460	False	NA	NA	False	NA	NA	NA	104301925	104302100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_104301900_104302100
PB_novel_07963_0	chr11	-	169	1	Intergenic	novelGene_7668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	4897	False	NA	NA	False	NA	NA	NA	104372481	104372312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_104372300_104372500
PB_novel_07966_0	chr11	-	180	1	Intergenic	novelGene_7669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAGAAACTAA	NA	False	NA	NA	False	NA	NA	NA	104404968	104404788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_104404800_104405000
PB_novel_07974_0	chr11	-	172	1	Intergenic	novelGene_7670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAACATATATAAGCAAG	NA	False	NA	NA	False	NA	NA	NA	104657570	104657398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_104657400_104657600
PB_novel_07976_0	chr11	+	176	1	Intergenic	novelGene_7671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAATA	NA	False	NA	NA	False	NA	NA	NA	104794365	104794541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_104794400_104794500
PB_novel_07985_0	chr11	+	171	1	Intergenic	novelGene_7672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105066120	105066291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_105066100_105066300
PB_novel_07988_0	chr11	+	177	1	Intergenic	novelGene_7673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTAAAAAAAAAAAAAAAGAA	4425	False	NA	NA	False	NA	NA	NA	105096653	105096830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_105096700_105096800
PB_novel_07989_1	chr11	-	175	1	Intergenic	novelGene_7674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAACAAATAT	NA	False	NA	NA	False	NA	NA	NA	105107024	105106849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_105106800_105107000
PB_novel_07991_0	chr11	-	175	1	Intergenic	novelGene_7675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	8900	False	NA	NA	False	NA	NA	NA	105117420	105117245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_105117200_105117400
PB_novel_07998_0	chr11	+	163	1	Intergenic	novelGene_7676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105331305	105331468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_105331300_105331500
PB_novel_08002_0	chr11	-	449	1	Intergenic	novelGene_7677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105525127	105524678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_105524700_105525100
PB_novel_08010_0	chr11	-	173	1	Intergenic	novelGene_7678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATTTAAAAAAAA	5620	False	NA	NA	False	NA	NA	NA	105969465	105969292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_105969300_105969500
PB_novel_08016_0	chr11	+	200	1	Intergenic	novelGene_7679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATGAATAAAT	NA	False	NA	NA	False	NA	NA	NA	106031917	106032117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106031900_106032100
PB_novel_08021_0	chr11	+	175	1	Intergenic	novelGene_7680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAATACCCCTAC	4623	False	NA	NA	False	NA	NA	NA	106101624	106101799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106101600_106101800
PB_novel_08022_0	chr11	+	2334	1	NIC	ENSMUSG00000020705.7	novel	4011	18	NA	NA	22	-19543	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAAAATGAAAA	NA	False	NA	NA	False	NA	NA	NA	106107773	106110107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_+_106107800_106110100
PB_novel_08024_0	chr11	+	172	1	Intergenic	novelGene_7681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	106124878	106125050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106124900_106125000
PB_novel_08027_0	chr11	+	175	1	Intergenic	novelGene_7682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAAATC	1459	False	NA	NA	False	NA	NA	NA	106161765	106161940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106161800_106161900
PB_novel_08028_0	chr11	-	184	1	Intergenic	novelGene_7683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAATATATTATATG	NA	False	NA	NA	False	NA	NA	NA	106331927	106331743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_106331700_106331900
PB_novel_08029_2	chr11	+	176	1	Intergenic	novelGene_7684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106333342	106333518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106333300_106333500
PB_novel_08030_0	chr11	-	174	1	Intergenic	novelGene_7685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	9096	False	NA	NA	False	NA	NA	NA	106336006	106335832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_106335800_106336000
PB_novel_08033_0	chr11	+	172	1	Intergenic	novelGene_7686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAACTGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106350878	106351050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106350900_106351000
PB_novel_08045_0	chr11	+	159	1	Intergenic	novelGene_7687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	106456669	106456828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106456700_106456800
PB_novel_08046_0	chr11	-	168	1	Intergenic	novelGene_7688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAAAAACAC	283	False	NA	NA	False	NA	NA	NA	106488143	106487975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_106488000_106488100
PB_novel_08048_1	chr11	-	178	1	Intergenic	novelGene_7689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2723	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4955	False	NA	NA	False	NA	NA	NA	106525154	106524976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_106525000_106525200
PB_novel_08055_0	chr11	+	166	1	Intergenic	novelGene_7690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAAGTCTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106547636	106547802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106547600_106547800
PB_novel_08057_0	chr11	+	2497	1	Antisense	novelGene_ENSMUSG00000020717.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106570898	106573395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_106570900_106573400
PB_novel_08060_0	chr11	+	131	1	Intergenic	novelGene_7691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106613139	106613270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106613100_106613300
PB_novel_08064_0	chr11	+	172	1	Antisense	novelGene_ENSMUSG00000020718.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	106662730	106662902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_106662700_106662900
PB_novel_08067_20	chr11	+	5159	2	Antisense	novelGene_ENSMUSG00002076984.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106673628	106678885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_106676118_106676215
PB_novel_08067_25	chr11	+	5257	1	Antisense	novelGene_ENSMUSG00002076984.1_AS_novelGene_ENSMUSG00000020719.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	467	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106673628	106678885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_106673600_106678900
PB_novel_08071_0	chr11	+	175	1	Intergenic	novelGene_7692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9529	False	NA	NA	False	NA	NA	NA	106698200	106698375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106698200_106698400
PB_novel_08074_1	chr11	-	179	1	Intergenic	novelGene_7693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGCAAGTTAGG	9029	False	NA	NA	False	NA	NA	NA	106742083	106741904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_106741900_106742100
PB_novel_08076_0	chr11	-	158	1	Intergenic	novelGene_7694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGTTCC	NA	False	NA	NA	False	NA	NA	NA	106761031	106760873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_106760900_106761000
PB_novel_08080_0	chr11	+	172	1	Intergenic	novelGene_7695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAAAGC	NA	False	NA	NA	False	NA	NA	NA	106821993	106822165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106822000_106822200
PB_novel_08083_0	chr11	+	175	1	Intergenic	novelGene_7696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAACACCCATAAA	NA	False	NA	NA	False	NA	NA	NA	106854702	106854877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106854700_106854900
PB_novel_08085_0	chr11	+	176	1	Intergenic	novelGene_7697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGTATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106876480	106876656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106876500_106876700
PB_novel_08088_0	chr11	+	176	1	Intergenic	novelGene_7698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	106884577	106884753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106884600_106884800
PB_novel_08092_0	chr11	+	197	1	Intergenic	novelGene_7699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATACATACATACATACAA	NA	False	NA	NA	False	NA	NA	NA	106895892	106896089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106895900_106896100
PB_novel_08096_0	chr11	-	135	1	Intergenic	novelGene_7700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8484	False	NA	NA	False	NA	NA	NA	106905145	106905010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_106905000_106905100
PB_novel_08097_0	chr11	-	176	1	Intergenic	novelGene_7701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	814	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6823	False	NA	NA	False	NA	NA	NA	106906806	106906630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_106906600_106906800
PB_novel_08099_0	chr11	+	308	1	Intergenic	novelGene_7702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACCAAAATAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	106910779	106911087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106910800_106911100
PB_novel_08100_0	chr11	-	173	1	Intergenic	novelGene_7703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	6069	False	NA	NA	False	NA	NA	NA	106914639	106914466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_106914500_106914600
PB_novel_08106_0	chr11	-	175	1	Intergenic	novelGene_7704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106955366	106955191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_106955200_106955400
PB_novel_08108_0	chr11	+	177	1	Intergenic	novelGene_7705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	106988435	106988612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_106988400_106988600
PB_novel_08110_0	chr11	-	177	1	Intergenic	novelGene_7706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGTTTAAAAAAA	2562	False	NA	NA	False	NA	NA	NA	106996930	106996753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_106996800_106996900
PB_novel_08112_0	chr11	-	172	1	Intergenic	novelGene_7707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAATGAAAGAAAG	8540	False	NA	NA	False	NA	NA	NA	107007138	107006966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107007000_107007100
PB_novel_08113_1	chr11	-	173	1	Intergenic	novelGene_7719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATACATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	107192263	107192090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107192100_107192300
PB_novel_08115_0	chr11	+	174	1	Intergenic	novelGene_7708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAACACAAATAAAT	2184	False	NA	NA	False	NA	NA	NA	107024923	107025097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_107024900_107025100
PB_novel_08116_0	chr11	+	177	1	Intergenic	novelGene_7709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	2581	False	NA	NA	False	NA	NA	NA	107025320	107025497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_107025300_107025500
PB_novel_08117_0	chr11	-	159	1	Intergenic	novelGene_7710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAAAGAATTT	NA	False	NA	NA	False	NA	NA	NA	107026326	107026167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107026200_107026300
PB_novel_08118_1	chr11	+	178	1	Intergenic	novelGene_7711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAACAAAAAAACAAA	3817	False	NA	NA	False	NA	NA	NA	107029878	107030056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_107029900_107030100
PB_novel_08119_0	chr11	+	190	1	Intergenic	novelGene_7712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	6577	False	NA	NA	False	NA	NA	NA	107032638	107032828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_107032600_107032800
PB_novel_08120_0	chr11	+	177	1	Intergenic	novelGene_7713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTTAAAAGAAAGAAAGAA	8588	False	NA	NA	False	NA	NA	NA	107034649	107034826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_107034600_107034800
PB_novel_08123_0	chr11	+	174	1	Intergenic	novelGene_7714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGACACTTG	NA	False	NA	NA	False	NA	NA	NA	107046789	107046963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_107046800_107047000
PB_novel_08126_0	chr11	-	177	1	Intergenic	novelGene_7715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107054327	107054150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107054200_107054300
PB_novel_08127_0	chr11	+	159	1	Intergenic	novelGene_7716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATATTAA	NA	False	NA	NA	False	NA	NA	NA	107078624	107078783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_107078600_107078800
PB_novel_08129_0	chr11	-	174	1	Intergenic	novelGene_7717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	107098348	107098174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107098200_107098300
PB_novel_08130_0	chr11	+	1396	1	Antisense	novelGene_ENSMUSG00000040430.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	107101193	107102589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_107101200_107102600
PB_novel_08131_0	chr11	-	178	1	Intergenic	novelGene_7718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAACAAACAAAACAA	8961	False	NA	NA	False	NA	NA	NA	107123691	107123513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107123500_107123700
PB_novel_08138_0	chr11	-	171	1	Intergenic	novelGene_7720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACCTTTAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	107221113	107220942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107220900_107221100
PB_novel_08148_0	chr11	+	171	1	Intergenic	novelGene_7721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	107368882	107369053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_107368900_107369100
PB_novel_08150_0	chr11	+	177	1	Intergenic	novelGene_7722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107377938	107378115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_107377900_107378100
PB_novel_08152_0	chr11	-	187	1	Intergenic	novelGene_7723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTGGATTG	NA	False	NA	NA	False	NA	NA	NA	107393955	107393768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107393800_107394000
PB_novel_08155_0	chr11	+	175	1	Intergenic	novelGene_7724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAAACAAA	6672	False	NA	NA	False	NA	NA	NA	107424194	107424369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_107424200_107424400
PB_novel_08156_0	chr11	-	173	1	Intergenic	novelGene_7725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	107431820	107431647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107431600_107431800
PB_novel_08159_0	chr11	-	5645	1	Antisense	novelGene_ENSMUSG00000020721.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	9465	False	NA	NA	False	AAAAAG	-42	NA	107445310	107439665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_107439700_107445300
PB_novel_08161_0	chr11	-	175	1	Intergenic	novelGene_7726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAATTATCTTAAAAA	6756	False	NA	NA	False	NA	NA	NA	107455308	107455133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107455100_107455300
PB_novel_08165_0	chr11	-	171	1	Intergenic	novelGene_7727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAAGAAATTGC	NA	False	NA	NA	False	NA	NA	NA	107473248	107473077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107473100_107473200
PB_novel_08168_0	chr11	-	175	1	Intergenic	novelGene_7728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107486893	107486718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107486700_107486900
PB_novel_08170_0	chr11	-	185	1	Intergenic	novelGene_7729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAAGAGGCTAATAGA	NA	False	NA	NA	False	NA	NA	NA	107500255	107500070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107500100_107500300
PB_novel_08171_0	chr11	-	176	1	Intergenic	novelGene_7730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTAAAATAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	107501330	107501154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107501200_107501300
PB_novel_08175_0	chr11	-	177	1	Intergenic	novelGene_7731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAACAAACAACACTCA	9062	False	NA	NA	False	NA	NA	NA	107565460	107565283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_107565300_107565500
PB_novel_08182_0	chr11	+	154	1	Intergenic	novelGene_7732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAACTTAAAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	108307228	108307382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_108307200_108307400
PB_novel_08203_0	chr11	-	176	1	Intergenic	novelGene_7733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGATGACAAG	NA	False	NA	NA	False	NA	NA	NA	109677797	109677621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_109677600_109677800
PB_novel_08210_0	chr11	-	138	1	Intergenic	novelGene_7734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	110297989	110297851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_110297900_110298000
PB_novel_08214_0	chr11	-	170	1	Intergenic	novelGene_7735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	110886497	110886327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_110886300_110886500
PB_novel_08231_0	chr11	+	1942	1	Intergenic	novelGene_7736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113368359	113370301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_113368400_113370300
PB_novel_08233_0	chr11	-	184	1	Intergenic	novelGene_7737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATGAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	113471276	113471092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_113471100_113471300
PB_novel_08234_0	chr11	+	173	1	Intergenic	novelGene_7738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGCAAAGTG	NA	False	NA	NA	False	NA	NA	NA	113478212	113478385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_113478200_113478400
PB_novel_08237_0	chr11	+	172	1	Intergenic	novelGene_7739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATAAAATTAAATT	NA	False	NA	NA	False	NA	NA	NA	113561657	113561829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_113561700_113561800
PB_novel_08241_0	chr11	-	3352	1	NIC	ENSMUSG00000018727.20	novel	1123	7	NA	NA	5413	-2031	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113594380	113591028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_113591000_113594400
PB_novel_08243_0	chr11	+	178	1	Intergenic	novelGene_7740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACACAA	NA	False	NA	NA	False	NA	NA	NA	113644357	113644535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_113644400_113644500
PB_novel_08250_0	chr11	+	177	1	Intergenic	novelGene_7741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	113662798	113662975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_113662800_113663000
PB_novel_08251_0	chr11	-	169	1	Intergenic	novelGene_7742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	5886	False	NA	NA	False	NA	NA	NA	113704224	113704055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_113704100_113704200
PB_novel_08253_0	chr11	-	175	1	Intergenic	novelGene_7743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGAACTT	3940	False	NA	NA	False	NA	NA	NA	113767574	113767399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_113767400_113767600
PB_novel_08273_0	chr11	-	177	1	Intergenic	novelGene_7744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114597016	114596839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_114596800_114597000
PB_novel_08277_0	chr11	-	180	1	Intergenic	novelGene_7746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACTTTACA	NA	False	NA	NA	False	NA	NA	NA	114750530	114750350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_114750400_114750500
PB_novel_08279_0	chr11	-	175	1	Intergenic	novelGene_7745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	114690850	114690675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_114690700_114690800
PB_novel_08285_0	chr11	-	157	1	Intergenic	novelGene_7747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	114801201	114801044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_114801000_114801200
PB_novel_08287_0	chr11	-	185	1	Intergenic	novelGene_7748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	5859	False	NA	NA	False	NA	NA	NA	115060842	115060657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115060700_115060800
PB_novel_08291_0	chr11	-	169	1	Intergenic	novelGene_7749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTTTTTAAAGAACAAA	NA	False	NA	NA	False	NA	NA	NA	115234202	115234033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115234000_115234200
PB_novel_08297_0	chr11	+	175	1	Intergenic	novelGene_7750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAAAATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	115361511	115361686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_115361500_115361700
PB_novel_08302_3	chr11	-	181	1	Intergenic	novelGene_7751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	329	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	115400310	115400129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115400100_115400300
PB_novel_08302_4	chr11	-	169	1	Intergenic	novelGene_7753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	115407547	115407378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115407400_115407500
PB_novel_08303_0	chr11	+	176	1	Intergenic	novelGene_7752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	5744	False	NA	NA	False	NA	NA	NA	115400383	115400559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_115400400_115400600
PB_novel_08305_0	chr11	+	176	1	Intergenic	novelGene_7754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	6232	False	NA	NA	False	NA	NA	NA	115419059	115419235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_115419100_115419200
PB_novel_08307_1	chr11	-	177	1	Intergenic	novelGene_7755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAACATTTAAAAAAAAA	451	False	NA	NA	False	NA	NA	NA	115420035	115419858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115419900_115420000
PB_novel_08309_0	chr11	+	192	1	Intergenic	novelGene_7756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAAAAAAAACC	9955	False	NA	NA	False	NA	NA	NA	115430106	115430298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_115430100_115430300
PB_novel_08311_0	chr11	-	175	1	Intergenic	novelGene_7757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAAGAAAGAC	NA	False	NA	NA	False	NA	NA	NA	115431541	115431366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115431400_115431500
PB_novel_08315_0	chr11	-	201	1	Intergenic	novelGene_7758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAGAAAAAAAAAGAGCA	NA	False	NA	NA	False	NA	NA	NA	115450484	115450283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115450300_115450500
PB_novel_08318_0	chr11	-	175	1	Intergenic	novelGene_7760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAG	7735	False	NA	NA	False	NA	NA	NA	115490523	115490348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115490300_115490500
PB_novel_08321_0	chr11	+	171	1	Intergenic	novelGene_7761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACTTTATAAAAA	NA	False	NA	NA	False	NA	NA	NA	115501385	115501556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_115501400_115501600
PB_novel_08322_0	chr11	-	175	1	Intergenic	novelGene_7762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	209	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115537277	115537102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115537100_115537300
PB_novel_08324_0	chr11	-	175	1	Intergenic	novelGene_7763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	115571440	115571265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115571300_115571400
PB_novel_08334_0	chr11	-	177	1	Intergenic	novelGene_7764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGGTAAAAAAAA	4992	False	NA	NA	False	NA	NA	NA	115623287	115623110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115623100_115623300
PB_novel_08335_0	chr11	+	166	1	Intergenic	novelGene_7765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGAGCATTAAAAT	NA	False	NA	NA	False	NA	NA	NA	115628119	115628285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_115628100_115628300
PB_novel_08337_0	chr11	-	176	1	Intergenic	novelGene_7766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	115633294	115633118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115633100_115633300
PB_novel_08339_0	chr11	-	160	1	Intergenic	novelGene_7767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	238	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAATC	3210	False	NA	NA	False	NA	NA	NA	115642017	115641857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115641900_115642000
PB_novel_08340_0	chr11	-	338	1	Intergenic	novelGene_7768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	9383	False	NA	NA	False	NA	NA	NA	115654425	115654087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115654100_115654400
PB_novel_08344_0	chr11	-	167	1	Intergenic	novelGene_7771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	115907764	115907597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115907600_115907800
PB_novel_08349_0	chr11	+	177	1	Intergenic	novelGene_7769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATTTAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	115813580	115813757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_115813600_115813800
PB_novel_08353_0	chr11	+	172	1	Intergenic	novelGene_7770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACAAAACAACAAA	4400	False	NA	NA	False	NA	NA	NA	115904557	115904729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_115904600_115904700
PB_novel_08355_0	chr11	+	176	1	Intergenic	novelGene_7772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4339	False	NA	NA	False	NA	NA	NA	115916664	115916840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_115916700_115916800
PB_novel_08363_0	chr11	-	180	1	Intergenic	novelGene_7773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTCA	NA	False	NA	NA	False	NA	NA	NA	115981384	115981204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115981200_115981400
PB_novel_08365_0	chr11	+	179	1	Intergenic	novelGene_7774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATTCCAAAAAGG	1162	False	NA	NA	False	NA	NA	NA	115984002	115984181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_115984000_115984200
PB_novel_08366_0	chr11	-	178	1	Intergenic	novelGene_7775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAATAATA	NA	False	NA	NA	False	NA	NA	NA	115986268	115986090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115986100_115986300
PB_novel_08369_0	chr11	-	180	1	Intergenic	novelGene_7776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGGAC	9132	False	NA	NA	False	NA	NA	NA	116003586	116003406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_116003400_116003600
PB_novel_08375_0	chr11	+	176	1	Intergenic	novelGene_7777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGGC	NA	False	NA	NA	False	NA	NA	NA	116167235	116167411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_116167200_116167400
PB_novel_08378_0	chr11	-	165	1	Intergenic	novelGene_7778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATAAAATCTTTTTT	-8	True	NA	NA	False	NA	NA	NA	116168179	116168014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_116168000_116168200
PB_novel_08379_0	chr11	+	175	1	Intergenic	novelGene_7779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	116169035	116169210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_116169000_116169200
PB_novel_08385_0	chr11	+	172	1	Intergenic	novelGene_7780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAACAGTTC	NA	False	NA	NA	False	NA	NA	NA	116259570	116259742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_116259600_116259700
PB_novel_08386_0	chr11	+	186	1	Intergenic	novelGene_7781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGGATTG	NA	False	NA	NA	False	NA	NA	NA	116265564	116265750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_116265600_116265800
PB_novel_08393_0	chr11	-	192	1	Intergenic	novelGene_7782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116395040	116394848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_116394800_116395000
PB_novel_08395_0	chr11	-	176	1	Intergenic	novelGene_7783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATAAAAAAT	6684	False	NA	NA	False	NA	NA	NA	116522880	116522704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_116522700_116522900
PB_novel_08396_0	chr11	+	176	1	Intergenic	novelGene_7784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	307	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACCAAAGC	NA	False	NA	NA	False	NA	NA	NA	116527593	116527769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_116527600_116527800
PB_novel_08399_0	chr11	-	174	1	Intergenic	novelGene_7785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	3001	False	NA	NA	False	NA	NA	NA	116546387	116546213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_116546200_116546400
PB_novel_08401_0	chr11	-	1427	1	NIC	ENSMUSG00000057286.7	novel	3643	9	NA	NA	-7	-2370	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACATCAAAAAAAAAAAAAAA	9118	False	NA	NA	False	NA	NA	NA	116570511	116569084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_116569100_116570500
PB_novel_08402_0	chr11	+	177	1	Intergenic	novelGene_7786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACTCACA	NA	False	NA	NA	False	NA	NA	NA	116574337	116574514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_116574300_116574500
PB_novel_08414_0	chr11	-	171	1	Intergenic	novelGene_7787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	2514	False	NA	NA	False	NA	NA	NA	116772934	116772763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_116772800_116772900
PB_novel_08418_0	chr11	-	167	1	Intergenic	novelGene_7788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	531	False	NA	NA	False	NA	NA	NA	116774917	116774750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_116774800_116774900
PB_novel_08420_0	chr11	+	177	1	Intergenic	novelGene_7789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	116800589	116800766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_116800600_116800800
PB_novel_08423_0	chr11	-	173	1	Intergenic	novelGene_7790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAATCAACCCCCAAA	NA	False	NA	NA	False	NA	NA	NA	116936305	116936132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_116936100_116936300
PB_novel_08427_0	chr11	-	212	1	Intergenic	novelGene_7791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAACCAAAAAAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	116956598	116956386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_116956400_116956600
PB_novel_08438_0	chr11	-	176	1	Intergenic	novelGene_7792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	575	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCGCGA	NA	False	NA	NA	False	NA	NA	NA	117255676	117255500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_117255500_117255700
PB_novel_08443_0	chr11	+	176	1	Intergenic	novelGene_7793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	117424660	117424836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_117424700_117424800
PB_novel_08464_0	chr11	+	3528	1	Intergenic	novelGene_7794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-16	NA	117618307	117621835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_117618300_117621800
PB_novel_08470_0	chr11	+	151	1	Intergenic	novelGene_7795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATGTAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	117724298	117724449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_117724300_117724400
PB_novel_08471_0	chr11	-	175	1	Intergenic	novelGene_7796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117728846	117728671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_117728700_117728800
PB_novel_08474_0	chr11	-	161	1	Intergenic	novelGene_7797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTAAAAAAAAAT	5673	False	NA	NA	False	NA	NA	NA	117776540	117776379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_117776400_117776500
PB_novel_08481_0	chr11	+	183	1	Intergenic	novelGene_7798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6781	False	NA	NA	False	NA	NA	NA	117839073	117839256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_117839100_117839300
PB_novel_08484_0	chr11	-	168	1	Intergenic	novelGene_7799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATTAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	117893785	117893617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_117893600_117893800
PB_novel_08489_0	chr11	+	181	1	Intergenic	novelGene_7800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAATATATTCAGA	NA	False	NA	NA	False	NA	NA	NA	118125113	118125294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_118125100_118125300
PB_novel_08492_0	chr11	+	177	1	Intergenic	novelGene_7801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	315	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	118227863	118228040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_118227900_118228000
PB_novel_08494_0	chr11	-	1749	1	Intergenic	novelGene_7802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	118364933	118363184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_118363200_118364900
PB_novel_08500_0	chr11	-	177	1	Intergenic	novelGene_7803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGGGGAAGAG	NA	False	NA	NA	False	NA	NA	NA	118922304	118922127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_118922100_118922300
PB_novel_08504_0	chr11	+	219	1	Intergenic	novelGene_7804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTCTCAAAAAACTGTTTA	7687	False	NA	NA	False	NA	NA	NA	119097073	119097292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_119097100_119097300
PB_novel_08509_0	chr11	-	131	1	Intergenic	novelGene_7805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	119156617	119156486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_119156500_119156600
PB_novel_08515_0	chr11	-	170	1	Intergenic	novelGene_7806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATCTTAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	119257666	119257496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_119257500_119257700
PB_novel_08528_0	chr11	+	158	1	Intergenic	novelGene_7807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATTTTTAAGTACAA	5582	False	NA	NA	False	NA	NA	NA	119481633	119481791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_119481600_119481800
PB_novel_08532_0	chr11	+	3402	1	Intergenic	novelGene_7808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	119566423	119569825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_119566400_119569800
PB_novel_08542_0	chr11	-	168	1	Intergenic	novelGene_7809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAATAGA	NA	False	NA	NA	False	NA	NA	NA	119919980	119919812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_119919800_119920000
PB_novel_08543_0	chr11	+	173	1	Intergenic	novelGene_7810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAACAAAACAAAACAAAA	5211	False	NA	NA	False	NA	NA	NA	119921912	119922085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_119921900_119922100
PB_novel_08544_0	chr11	-	174	1	Intergenic	novelGene_7811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	119922346	119922172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_119922200_119922300
PB_novel_08546_1	chr11	+	1669	1	Antisense	novelGene_ENSMUSG00000061306.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120032049	120033718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_120032000_120033700
PB_novel_08553_0	chr11	+	176	1	Intergenic	novelGene_7812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAGACAATA	804	False	NA	NA	False	NA	NA	NA	120099750	120099926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_120099800_120099900
PB_novel_08562_0	chr11	+	175	1	Intergenic	novelGene_7813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6	True	NA	NA	False	NA	NA	NA	120232975	120233150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_120233000_120233200
PB_novel_08576_0	chr11	-	860	1	Intergenic	novelGene_7814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACCCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120352303	120351443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_120351400_120352300
PB_novel_08579_0	chr11	-	166	1	Intergenic	novelGene_7815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	1393	False	NA	NA	False	NA	NA	NA	120377342	120377176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_120377200_120377300
PB_novel_08586_0	chr11	+	176	1	Intergenic	novelGene_7816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAAAAAGTG	2019	False	NA	NA	False	NA	NA	NA	120460139	120460315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_120460100_120460300
PB_novel_08594_0	chr11	-	1594	1	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	14	-854	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120508720	120507126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr11_-_120507100_120508700
PB_novel_08605_0	chr11	-	174	1	Intergenic	novelGene_7817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	675	False	NA	NA	False	NA	NA	NA	120580917	120580743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_120580700_120580900
PB_novel_08606_0	chr11	-	3220	1	Antisense	novelGene_ENSMUSG00000025142.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACCCAAAAAAAAAAAAA	1550	False	NA	NA	False	NA	NA	NA	120596966	120593746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_-_120593700_120597000
PB_novel_08617_0	chr11	+	2184	1	Intergenic	novelGene_7818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	170	False	NA	NA	False	NA	NA	NA	120731042	120733226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_120731000_120733200
PB_novel_08619_1	chr11	-	3466	1	Intergenic	novelGene_7819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGAAAAAAAAAAAAAAAGAA	4517	False	NA	NA	False	NA	NA	NA	120743484	120740018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_120740000_120743500
PB_novel_08623_1	chr11	+	177	1	Intergenic	novelGene_7820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	120817630	120817807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_120817600_120817800
PB_novel_08627_0	chr11	+	176	1	Intergenic	novelGene_7821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	120822858	120823034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_120822900_120823000
PB_novel_08630_0	chr11	-	175	1	Intergenic	novelGene_7822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAGAGAGAGATAAAG	NA	False	NA	NA	False	NA	NA	NA	120942452	120942277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_120942300_120942500
PB_novel_08631_0	chr11	-	177	1	Intergenic	novelGene_7823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAGATC	NA	False	NA	NA	False	NA	NA	NA	120951682	120951505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_120951500_120951700
PB_novel_08637_0	chr11	+	171	1	Intergenic	novelGene_7824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAGAGAAATCGA	NA	False	NA	NA	False	NA	NA	NA	121104319	121104490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_121104300_121104500
PB_novel_08638_0	chr11	-	180	1	Intergenic	novelGene_7825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAGTAAAATAG	NA	False	NA	NA	False	NA	NA	NA	121131228	121131048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_121131000_121131200
PB_novel_08639_0	chr11	+	177	1	Intergenic	novelGene_7826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	121138189	121138366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_121138200_121138400
PB_novel_08650_0	chr11	-	171	1	Intergenic	novelGene_7827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	121215382	121215211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_121215200_121215400
PB_novel_08653_0	chr11	+	171	1	Antisense	novelGene_ENSMUSG00000025173.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTGC	2293	False	NA	NA	False	NA	NA	NA	121239604	121239775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr11_+_121239600_121239800
PB_novel_08654_0	chr11	+	184	1	Intergenic	novelGene_7828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATAAAATTATAT	NA	False	NA	NA	False	NA	NA	NA	121258706	121258890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_121258700_121258900
PB_novel_08655_0	chr11	+	179	1	Intergenic	novelGene_7829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	121259143	121259322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_121259100_121259300
PB_novel_08669_0	chr11	-	172	1	Intergenic	novelGene_7830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	5906	False	NA	NA	False	NA	NA	NA	121667218	121667046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_121667000_121667200
PB_novel_08672_1	chr11	-	3204	4	Intergenic	novelGene_7831	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	39	junction_1	17.326921891156	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	121847551	121832047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_121834966_121836089_121836151_121836329_121836457_121847453
PB_novel_08676_0	chr11	-	3852	1	Intergenic	novelGene_7832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121847545	121843693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_121843700_121847500
PB_novel_08691_0	chr12	-	176	1	Intergenic	novelGene_4855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAATGGGTTTC	NA	False	NA	NA	False	NA	NA	NA	3542548	3542372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_3542400_3542500
PB_novel_08696_0	chr12	+	172	1	Intergenic	novelGene_4856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAGTAGTAAAAT	NA	False	NA	NA	False	NA	NA	NA	3570336	3570508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_3570300_3570500
PB_novel_08697_0	chr12	+	171	1	Intergenic	novelGene_4857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	3604047	3604218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_3604000_3604200
PB_novel_08700_0	chr12	+	2671	1	NIC	ENSMUSG00000071454.14	novel	2820	20	NA	NA	0	-21748	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAGACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3622433	3625104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_3622400_3625100
PB_novel_08701_0	chr12	-	181	1	Intergenic	novelGene_4858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAGTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3632333	3632152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_3632200_3632300
PB_novel_08703_0	chr12	-	167	1	Intergenic	novelGene_4859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	74	False	NA	NA	False	NA	NA	NA	3646321	3646154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_3646200_3646300
PB_novel_08705_0	chr12	-	174	1	Intergenic	novelGene_4860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAAATT	NA	False	NA	NA	False	NA	NA	NA	3649547	3649373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_3649400_3649500
PB_novel_08709_0	chr12	-	167	1	Antisense	novelGene_ENSMUSG00000071454.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTCAAAAAAAAGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	3695969	3695802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_3695800_3696000
PB_novel_08710_1	chr12	+	185	1	Intergenic	novelGene_4861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3697263	3697448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_3697300_3697400
PB_novel_08719_0	chr12	+	175	1	Intergenic	novelGene_4862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4071	False	NA	NA	False	NA	NA	NA	3877241	3877416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_3877200_3877400
PB_novel_08724_0	chr12	+	162	1	Intergenic	novelGene_4863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAGAAAAGAAAAAA	7100	False	NA	NA	False	NA	NA	NA	3967128	3967290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_3967100_3967300
PB_novel_08726_0	chr12	-	175	1	Intergenic	novelGene_4864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAAAGGGAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	4011337	4011162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_4011200_4011300
PB_novel_08729_1	chr12	+	177	1	Intergenic	novelGene_4865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATTTAGAAA	1364	False	NA	NA	False	NA	NA	NA	4134878	4135055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_4134900_4135100
PB_novel_08729_3	chr12	+	168	2	Intergenic	novelGene_4866	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	49	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAAGA	1365	False	NA	NA	False	NA	NA	NA	4134879	4170260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_4135004_4170216
PB_novel_08730_0	chr12	+	177	1	Intergenic	novelGene_4867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAGGCAGAG	NA	False	NA	NA	False	NA	NA	NA	4151673	4151850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_4151700_4151800
PB_novel_08731_0	chr12	-	180	1	Intergenic	novelGene_4868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGGAAT	NA	False	NA	NA	False	NA	NA	NA	4165589	4165409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_4165400_4165600
PB_novel_08742_0	chr12	+	176	1	Intergenic	novelGene_4869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTTAT	NA	False	NA	NA	False	NA	NA	NA	4455929	4456105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_4455900_4456100
PB_novel_08743_1	chr12	-	173	1	Intergenic	novelGene_4874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	4633692	4633519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_4633500_4633700
PB_novel_08745_0	chr12	+	154	1	Intergenic	novelGene_4870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAATTAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	4500763	4500917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_4500800_4500900
PB_novel_08750_0	chr12	+	138	1	Intergenic	novelGene_4871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAACCAAAAAA	2743	False	NA	NA	False	NA	NA	NA	4604719	4604857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_4604700_4604900
PB_novel_08751_0	chr12	-	154	1	Intergenic	novelGene_4872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAATTAAGGA	NA	False	NA	NA	False	NA	NA	NA	4615553	4615399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_4615400_4615600
PB_novel_08753_0	chr12	-	175	1	Intergenic	novelGene_4873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAACAAAACAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	4632032	4631857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_4631900_4632000
PB_novel_08757_0	chr12	+	173	1	Intergenic	novelGene_4875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACACACACACACAGATG	9459	False	NA	NA	False	NA	NA	NA	4791604	4791777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_4791600_4791800
PB_novel_08762_0	chr12	-	360	1	Intergenic	novelGene_4876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGAGAGAGAG	9427	False	NA	NA	False	NA	NA	NA	4898319	4897959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_4898000_4898300
PB_novel_08768_0	chr12	+	2993	1	Antisense	novelGene_ENSMUSG00000020634.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4933243	4936236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_4933200_4936200
PB_novel_08776_0	chr12	-	191	1	Intergenic	novelGene_4877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACACTAAAATATTAAAAATC	NA	False	NA	NA	False	NA	NA	NA	4976144	4975953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_4976000_4976100
PB_novel_08777_0	chr12	+	178	1	Intergenic	novelGene_4878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATGTTTAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	4981855	4982033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_4981900_4982000
PB_novel_08789_0	chr12	+	174	1	Intergenic	novelGene_4879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATGATTTCT	NA	False	NA	NA	False	NA	NA	NA	8091114	8091288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_8091100_8091300
PB_novel_08790_0	chr12	-	176	1	Intergenic	novelGene_4880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATAAATAAAAGG	NA	False	NA	NA	False	NA	NA	NA	8259853	8259677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_8259700_8259900
PB_novel_08796_0	chr12	+	210	1	Intergenic	novelGene_4881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACTGAAAAGTTAAATA	NA	False	NA	NA	False	NA	NA	NA	8465345	8465555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_8465300_8465600
PB_novel_08801_0	chr12	+	274	1	Intergenic	novelGene_4882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTCTCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8688974	8689248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_8689000_8689200
PB_novel_08804_0	chr12	-	177	1	Intergenic	novelGene_4883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8717101	8716924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_8716900_8717100
PB_novel_08805_0	chr12	-	174	1	Intergenic	novelGene_4884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8718634	8718460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_8718500_8718600
PB_novel_08808_0	chr12	-	1414	1	Intergenic	novelGene_4885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAACAAACAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-37	NA	8789110	8787696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_8787700_8789100
PB_novel_08809_1	chr12	+	177	1	Intergenic	novelGene_4889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAATTTAGAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	8887757	8887934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_8887800_8887900
PB_novel_08810_0	chr12	+	177	1	Intergenic	novelGene_4886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAACAAAACAAAC	4354	False	NA	NA	False	NA	NA	NA	8796790	8796967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_8796800_8797000
PB_novel_08812_0	chr12	-	180	1	Intergenic	novelGene_4887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAATAAATTTAAAA	NA	False	NA	NA	False	NA	NA	NA	8818535	8818355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_8818400_8818500
PB_novel_08813_0	chr12	-	175	1	Intergenic	novelGene_4888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	8818935	8818760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_8818800_8818900
PB_novel_08817_0	chr12	+	3742	1	FSM	ENSMUSG00000111942.2	ENSMUST00000217708.2	6092	1	4319	-1969	4319	1969	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	10206460	10210202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_10206500_10210200
PB_novel_08818_0	chr12	+	2323	1	NIC	ENSMUSG00000020621.7	novel	1480	2	NA	NA	71	-2397	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10440842	10443165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_10440800_10443200
PB_novel_08823_0	chr12	-	175	1	Intergenic	novelGene_4890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAAAAAACCTGAT	NA	False	NA	NA	False	NA	NA	NA	11174402	11174227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_11174200_11174400
PB_novel_08824_2	chr12	+	174	1	Intergenic	novelGene_4891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	11197950	11198124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_11198000_11198100
PB_novel_08826_0	chr12	+	170	1	Intergenic	novelGene_4892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAACAACAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	11249919	11250089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_11249900_11250100
PB_novel_08827_0	chr12	-	176	1	Intergenic	novelGene_4893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	543	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	11275616	11275440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_11275400_11275600
PB_novel_08829_0	chr12	-	177	1	Antisense	novelGene_ENSMUSG00000020608.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAACCAAAGGT	NA	False	NA	NA	False	NA	NA	NA	11342306	11342129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_11342100_11342300
PB_novel_08830_0	chr12	+	2400	1	Intergenic	novelGene_4894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAAAAAAAAAAATCAA	NA	False	NA	NA	False	NA	NA	NA	11351675	11354075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_11351700_11354100
PB_novel_08831_0	chr12	-	1255	1	Intergenic	novelGene_4895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11362827	11361572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_11361600_11362800
PB_novel_08836_0	chr12	+	176	1	Intergenic	novelGene_4896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGTAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	12330008	12330184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_12330000_12330200
PB_novel_08838_2	chr12	+	164	2	Antisense	novelGene_ENSMUSG00000118614.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAATTTTTAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	12676815	12720980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_12676941_12720941
PB_novel_08841_0	chr12	-	162	1	Intergenic	novelGene_4897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	12839676	12839514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_12839500_12839700
PB_novel_08845_0	chr12	-	3985	1	Intergenic	novelGene_4898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	1235	False	NA	NA	False	NA	NA	NA	12941871	12937886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_12937900_12941900
PB_novel_08850_0	chr12	-	178	1	Intergenic	novelGene_4899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAGAAAAAAAGAAATA	NA	False	NA	NA	False	NA	NA	NA	13026518	13026340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_13026300_13026500
PB_novel_08853_0	chr12	-	767	1	FSM	ENSMUSG00000071414.6	ENSMUST00000166583.4	948	1	545	-364	545	364	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATCTGA	NA	False	NA	NA	False	AATAAA	-14	NA	13505426	13504659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_13504700_13505400
PB_novel_08863_0	chr12	+	172	1	Intergenic	novelGene_4900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTCCA	NA	False	NA	NA	False	NA	NA	NA	15579056	15579228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_15579100_15579200
PB_novel_08864_0	chr12	+	175	1	Intergenic	novelGene_4901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	16163745	16163920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_16163700_16163900
PB_novel_08867_0	chr12	+	5005	1	Antisense	novelGene_ENSMUSG00000020593.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6623	False	NA	NA	False	NA	NA	NA	16628994	16633999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_16629000_16634000
PB_novel_08871_0	chr12	+	5003	1	Genic_Genomic	ENSMUSG00000020580.11	novel	NA	NA	NA	NA	-49	-46970	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCCAAAAAAAAAAAAAACC	1986	False	NA	NA	False	NA	NA	NA	16944846	16949849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_16944800_16949800
PB_novel_08884_0	chr12	-	188	1	Intergenic	novelGene_4902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATCTTAAAAAAAAAAAAG	2729	False	NA	NA	False	NA	NA	NA	17345667	17345479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_17345500_17345700
PB_novel_08885_0	chr12	+	177	1	Intergenic	novelGene_4903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAACACACAGAATTA	1645	False	NA	NA	False	NA	NA	NA	17366589	17366766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_17366600_17366800
PB_novel_08887_1	chr12	-	4533	1	Antisense	novelGene_ENSMUSG00000061458.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17425600	17421067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_17421100_17425600
PB_novel_08889_0	chr12	-	3927	1	Antisense	novelGene_ENSMUSG00000061458.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACAG	7072	False	NA	NA	False	NA	NA	NA	17452302	17448375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_17448400_17452300
PB_novel_08891_2	chr12	-	6087	2	Intergenic	novelGene_4904	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCCCCTCCCAACACA	NA	False	NA	NA	False	NA	NA	NA	17514666	17508375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_17511200_17511403
PB_novel_08898_0	chr12	-	176	1	Intergenic	novelGene_4905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAAAAAGAACAT	NA	False	NA	NA	False	NA	NA	NA	17642902	17642726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_17642700_17642900
PB_novel_08905_0	chr12	-	5453	1	FSM	ENSMUSG00000113612.2	ENSMUST00000222538.2	161	1	-4811	-481	-4811	481	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17950284	17944831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_17944800_17950300
PB_novel_08906_0	chr12	+	1326	1	NIC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	440	-521	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTAAAAAAAAACATACT	NA	False	NA	-11	True	NA	NA	NA	17952829	17954155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_17952800_17954200
PB_novel_08908_0	chr12	-	177	1	Intergenic	novelGene_4906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTTTTAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	17998909	17998732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_17998700_17998900
PB_novel_08916_0	chr12	+	170	1	Intergenic	novelGene_4907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTAAAAATGTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	18312627	18312797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_18312600_18312800
PB_novel_08917_10	chr12	+	2369	3	Genic_Genomic	ENSMUSG00000113402.2	novel	324	1	NA	NA	-161	18664	multi-exon	FALSE	canonical	1	1	junction_1	20.5	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATATAAAAAAAACATACT	NA	False	NA	NA	False	NA	NA	NA	18437594	18456743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_18437882_18453327_18453389_18454722
PB_novel_08917_11	chr12	+	2663	4	Genic_Genomic	ENSMUSG00000113402.2	novel	324	1	NA	NA	-256	18664	multi-exon	FALSE	canonical	3	19	junction_2	10.0332779621949	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATATAAAAAAAACATACT	NA	False	NA	NA	False	NA	NA	NA	18437499	18456743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_18437954_18452998_18453126_18453327_18453389_18454722
PB_novel_08917_14	chr12	+	2597	4	Genic_Genomic	ENSMUSG00000113402.2	novel	324	1	NA	NA	-262	18664	multi-exon	FALSE	canonical	3	7	junction_1	14.522013940528	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATATAAAAAAAACATACT	NA	False	NA	NA	False	NA	NA	NA	18437493	18456743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_18437882_18452998_18453126_18453327_18453389_18454722
PB_novel_08917_9	chr12	+	2542	3	Genic_Genomic	ENSMUSG00000113402.2	novel	324	1	NA	NA	-262	18664	multi-exon	FALSE	canonical	1	1	junction_1	20.5	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATATAAAAAAAACATACT	NA	False	NA	NA	False	NA	NA	NA	18437493	18456743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_18437954_18453327_18453389_18454722
PB_novel_08921_0	chr12	+	168	1	Intergenic	novelGene_4908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18543981	18544149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_18544000_18544100
PB_novel_08924_20	chr12	+	2236	5	Intergenic	novelGene_4910	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	15.4353490404331	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAACACACACACACAC	NA	False	NA	NA	False	NA	NA	NA	18914161	18924354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_18914267_18920412_18920540_18920741_18920803_18922243_18923331_18923498
PB_novel_08927_0	chr12	-	178	1	Intergenic	novelGene_4909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	18906560	18906382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_18906400_18906600
PB_novel_08933_0	chr12	+	4543	1	Genic_Genomic	ENSMUSG00000114188.2	novel	NA	NA	NA	NA	-295	-6226	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTCGAAAAACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19094411	19098954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_19094400_19099000
PB_novel_08937_0	chr12	-	176	1	Intergenic	novelGene_4911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19239400	19239224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_19239200_19239400
PB_novel_08939_0	chr12	-	9709	1	FSM	ENSMUSG00000113408.2	ENSMUST00000222201.2	109	1	-4630	-4970	-4630	4970	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAAGCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19350508	19340799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_19340800_19350500
PB_novel_08941_0	chr12	-	173	1	Intergenic	novelGene_4912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19356733	19356560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_19356600_19356700
PB_novel_08961_0	chr12	-	1789	1	Intergenic	novelGene_4913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAATTAAAGAAAATGA	NA	False	NA	NA	False	NA	NA	NA	19913462	19911673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_19911700_19913500
PB_novel_08969_1	chr12	+	3187	4	Genic_Genomic	ENSMUSG00000113901.2	novel	130	1	NA	NA	-255	14774	multi-exon	FALSE	canonical	1	2	junction_3	16.539514973407	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAACATACTGGA	NA	False	NA	NA	False	NA	NA	NA	20121627	20136786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_20122009_20132442_20132570_20132771_20132833_20134168
PB_novel_08969_2	chr12	+	1760	1	Intergenic	novelGene_4914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACATACTGGAG	NA	False	NA	NA	False	NA	NA	NA	20135027	20136787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_20135000_20136800
PB_novel_08975_0	chr12	+	2468	1	Intergenic	novelGene_4915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-26	NA	20251215	20253683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_20251200_20253700
PB_novel_08980_0	chr12	+	177	1	Intergenic	novelGene_4916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	20323551	20323728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_20323600_20323700
PB_novel_08989_0	chr12	+	2994	1	FSM	ENSMUSG00000113749.2	ENSMUST00000220565.2	721	1	-2069	-204	-2069	204	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAGCAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-28	NA	20465653	20468647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_+_20465700_20468600
PB_novel_09003_0	chr12	+	176	1	Intergenic	novelGene_4917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATTTTTA	NA	False	NA	NA	False	NA	NA	NA	20776263	20776439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_20776300_20776400
PB_novel_09019_0	chr12	+	178	1	Intergenic	novelGene_4918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAATG	NA	False	NA	NA	False	NA	NA	NA	21144047	21144225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_21144000_21144200
PB_novel_09029_0	chr12	-	161	1	Intergenic	novelGene_4919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	21419635	21419474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_21419500_21419600
PB_novel_09030_0	chr12	+	171	1	Intergenic	novelGene_4920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTTTAAAAAAAGAGAGAGA	2975	False	NA	NA	False	NA	NA	NA	21420854	21421025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_21420900_21421000
PB_novel_09033_0	chr12	+	162	1	Intergenic	novelGene_4921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAACAAACAAACAAATAA	NA	False	NA	NA	False	NA	NA	NA	21442720	21442882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_21442700_21442900
PB_novel_09040_0	chr12	-	176	1	Intergenic	novelGene_4922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGAGTTTCC	NA	False	NA	NA	False	NA	NA	NA	21498527	21498351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_21498400_21498500
PB_novel_09052_0	chr12	-	2573	1	Intergenic	novelGene_4923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21817684	21815111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_21815100_21817700
PB_novel_09070_0	chr12	-	177	1	Intergenic	novelGene_4924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	22221452	22221275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_22221300_22221500
PB_novel_09071_0	chr12	-	173	1	Intergenic	novelGene_4925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAACAACAAAACATCG	NA	False	NA	NA	False	NA	NA	NA	22230051	22229878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_22229900_22230100
PB_novel_09075_5	chr12	-	2911	6	Genic_Genomic	ENSMUSG00000113123.3_ENSMUSG00000113344.2	novel	734	5	NA	NA	-41	20052	multi-exon	TRUE	non_canonical	0	0	junction_4	21.2169743366013	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACACACACACA	NA	False	NA	NA	False	NA	NA	NA	22673387	22496534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_22498722_22500163_22500225_22500426_22500554_22515580_22515692_22516591_22516844_22673214
PB_novel_09081_0	chr12	+	162	1	Intergenic	novelGene_4926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATAAATCTTAAA	NA	False	NA	NA	False	NA	NA	NA	22792739	22792901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_22792700_22792900
PB_novel_09084_0	chr12	+	176	1	Intergenic	novelGene_4927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	23057312	23057488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_23057300_23057500
PB_novel_09090_15	chr12	-	3386	9	Genic_Genomic	ENSMUSG00000113532.2	novel	127	1	NA	NA	-301	280325	multi-exon	TRUE	non_canonical	0	0	junction_1	16.6414392406426	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAAAACATACTGGAGA	NA	False	NA	-19	True	NA	NA	NA	23477185	23196432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_23197221_23197657_23198659_23336804_23336884_23336971_23337287_23445829_23446015_23446104_23446506_23447833_23447895_23448096_23448224_23476756
PB_novel_09090_2	chr12	-	2684	6	Genic_Genomic	ENSMUSG00000113532.2	novel	127	1	NA	NA	-291	140478	multi-exon	TRUE	non_canonical	0	0	junction_1	18.9989473392607	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATGTAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	23477175	23336279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_23337367_23445457_23445643_23445700_23446506_23447833_23447895_23448096_23448224_23476756
PB_novel_09097_0	chr12	-	177	1	Intergenic	novelGene_4928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	23380160	23379983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_23380000_23380200
PB_novel_09104_0	chr12	+	165	1	Intergenic	novelGene_4929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAATCTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23681806	23681971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_23681800_23682000
PB_novel_09107_0	chr12	-	1339	1	Genic_Genomic	ENSMUSG00000113691.2	novel	NA	NA	NA	NA	2588	652	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAACATACTGGAGAG	NA	False	NA	NA	False	NA	NA	NA	23831544	23830205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_23830200_23831500
PB_novel_09108_0	chr12	+	3149	1	Intergenic	novelGene_4930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23834508	23837657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_23834500_23837700
PB_novel_09109_0	chr12	+	177	1	Intergenic	novelGene_4931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	23847976	23848153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_23848000_23848200
PB_novel_09117_0	chr12	+	179	1	Intergenic	novelGene_4932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	24144276	24144455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_24144300_24144500
PB_novel_09129_0	chr12	-	1060	1	FSM	ENSMUSG00000066553.6	ENSMUST00000140065.2	342	1	-54	-664	-54	664	mono-exon	FALSE	NA	NA	NA	NA	NA	418	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGAAGATGTTAAAAAAAA	NA	False	NA	NA	False	AATAAA	-7	NA	24689063	24688003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_24688000_24689100
PB_novel_09131_0	chr12	-	178	1	Intergenic	novelGene_4933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACAGCAGG	NA	False	NA	NA	False	NA	NA	NA	24739748	24739570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_24739600_24739700
PB_novel_09137_0	chr12	+	181	1	Intergenic	novelGene_4934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTAATTAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24805823	24806004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_24805800_24806000
PB_novel_09140_0	chr12	+	172	1	Intergenic	novelGene_4935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	5583	False	NA	NA	False	NA	NA	NA	24837203	24837375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_24837200_24837400
PB_novel_09141_0	chr12	+	176	1	Intergenic	novelGene_4936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATAGGCAAGAATT	7856	False	NA	NA	False	NA	NA	NA	24839476	24839652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_24839500_24839700
PB_novel_09151_0	chr12	+	176	1	Intergenic	novelGene_4937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	25071364	25071540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_25071400_25071500
PB_novel_09152_0	chr12	+	3203	1	NIC	ENSMUSG00000036333.12	novel	7409	32	NA	NA	-6757	-2050	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	205	False	NA	NA	False	NA	NA	NA	25095933	25099136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_25095900_25099100
PB_novel_09153_0	chr12	-	207	1	Intergenic	novelGene_4938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATAATA	1230	False	NA	NA	False	NA	NA	NA	25099980	25099773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_25099800_25100000
PB_novel_09154_0	chr12	-	171	1	Intergenic	novelGene_4939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	25138995	25138824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_25138800_25139000
PB_novel_09159_0	chr12	-	168	1	Intergenic	novelGene_4940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGGATATT	NA	False	NA	NA	False	NA	NA	NA	25980917	25980749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_25980700_25980900
PB_novel_09165_0	chr12	+	171	1	Intergenic	novelGene_4941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAAATAAATCTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28666328	28666499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_28666300_28666500
PB_novel_09172_0	chr12	-	176	1	Intergenic	novelGene_4942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAATATTAAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	28711999	28711823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_28711800_28712000
PB_novel_09179_0	chr12	-	176	1	Intergenic	novelGene_4943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAGAAGAAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	28782674	28782498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_28782500_28782700
PB_novel_09182_0	chr12	-	176	1	Intergenic	novelGene_4944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	5342	False	NA	NA	False	NA	NA	NA	28881072	28880896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_28880900_28881100
PB_novel_09186_0	chr12	+	2879	1	Intergenic	novelGene_4945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30631477	30634356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_30631500_30634400
PB_novel_09194_0	chr12	+	189	1	Intergenic	novelGene_4946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTTAAAAAAGTAGTAA	NA	False	NA	NA	False	NA	NA	NA	31288525	31288714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_31288500_31288700
PB_novel_09197_0	chr12	+	426	1	Intergenic	novelGene_4947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31386833	31387259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_31386800_31387300
PB_novel_09198_0	chr12	+	175	1	Intergenic	novelGene_4948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	31387348	31387523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_31387300_31387500
PB_novel_09199_0	chr12	+	174	1	Antisense	novelGene_ENSMUSG00000020664.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGAACCCTTTG	3207	False	NA	NA	False	NA	NA	NA	31394053	31394227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_31394100_31394200
PB_novel_09202_0	chr12	-	176	1	Intergenic	novelGene_4949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATCCAGGAC	NA	False	NA	NA	False	NA	NA	NA	31623277	31623101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_31623100_31623300
PB_novel_09206_0	chr12	+	161	1	Intergenic	novelGene_4950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAATCAATCAATCAAT	NA	False	NA	NA	False	NA	NA	NA	31745928	31746089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_31745900_31746100
PB_novel_09207_0	chr12	-	174	1	Intergenic	novelGene_4951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACGCTAAAAAAAAATGTAA	NA	False	NA	NA	False	NA	NA	NA	31800642	31800468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_31800500_31800600
PB_novel_09209_0	chr12	+	191	1	Intergenic	novelGene_4952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGAAAGTACATG	NA	False	NA	NA	False	NA	NA	NA	31801739	31801930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_31801700_31801900
PB_novel_09210_0	chr12	+	161	1	Intergenic	novelGene_4953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	31817637	31817798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_31817600_31817800
PB_novel_09213_0	chr12	-	156	1	Intergenic	novelGene_4954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	31861263	31861107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_31861100_31861300
PB_novel_09214_2	chr12	-	177	1	Intergenic	novelGene_4955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATATAGATCATAC	NA	False	NA	NA	False	NA	NA	NA	31877283	31877106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_31877100_31877300
PB_novel_09223_0	chr12	-	4273	1	Intergenic	novelGene_4956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-45	NA	32875901	32871628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_32871600_32875900
PB_novel_09225_0	chr12	-	81	1	Intergenic	novelGene_4957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGACT	NA	False	NA	NA	False	NA	NA	NA	32923276	32923195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_32923200_32923300
PB_novel_09240_0	chr12	+	177	1	Intergenic	novelGene_4958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	36064191	36064368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_36064200_36064400
PB_novel_09259_1	chr12	-	177	1	Intergenic	novelGene_4959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	288	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40629482	40629305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_40629300_40629500
PB_novel_09260_0	chr12	+	176	1	Intergenic	novelGene_4960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGAATTACA	NA	False	NA	NA	False	NA	NA	NA	40919042	40919218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_40919000_40919200
PB_novel_09263_0	chr12	+	4544	1	Intergenic	novelGene_4961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-24	NA	41220419	41224963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_41220400_41225000
PB_novel_09267_0	chr12	-	3417	1	Intergenic	novelGene_4962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41449155	41445738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_41445700_41449200
PB_novel_09270_0	chr12	-	175	1	Intergenic	novelGene_4963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTGAAAAAAAAGAAAATAT	NA	False	NA	NA	False	NA	NA	NA	41670747	41670572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_41670600_41670700
PB_novel_09279_0	chr12	+	154	1	Intergenic	novelGene_4964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	438	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	43189350	43189504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_43189400_43189500
PB_novel_09286_0	chr12	-	175	1	Intergenic	novelGene_4965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAGTAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	44335448	44335273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_44335300_44335400
PB_novel_09287_0	chr12	-	174	1	Intergenic	novelGene_4966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATACATTTGAC	NA	False	NA	NA	False	NA	NA	NA	44629194	44629020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_44629000_44629200
PB_novel_09292_0	chr12	-	450	1	Genic_Genomic	ENSMUSG00000021047.8	novel	NA	NA	NA	NA	-403	-98303	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46866115	46865665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_46865700_46866100
PB_novel_09294_0	chr12	-	173	1	Intergenic	novelGene_4967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47333450	47333277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_47333300_47333400
PB_novel_09301_0	chr12	+	177	1	Intergenic	novelGene_4968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	1935	False	NA	NA	False	NA	NA	NA	47814939	47815116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_47814900_47815100
PB_novel_09304_0	chr12	+	175	1	Intergenic	novelGene_4969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAGAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	49328782	49328957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_49328800_49329000
PB_novel_09307_0	chr12	+	181	1	Intergenic	novelGene_4970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAGAAAATT	NA	False	NA	NA	False	NA	NA	NA	50873574	50873755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_50873600_50873800
PB_novel_09310_0	chr12	+	158	1	Intergenic	novelGene_4971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAAAAAAACTTAA	NA	False	NA	NA	False	NA	NA	NA	51263094	51263252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_51263100_51263300
PB_novel_09318_0	chr12	+	1926	1	Intergenic	novelGene_4972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51681523	51683449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_51681500_51683400
PB_novel_09320_0	chr12	+	174	1	Intergenic	novelGene_4973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	6487	False	NA	NA	False	NA	NA	NA	51699132	51699306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_51699100_51699300
PB_novel_09323_0	chr12	-	175	1	Intergenic	novelGene_4974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAAAGACCA	NA	False	NA	NA	False	NA	NA	NA	51745194	51745019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_51745000_51745200
PB_novel_09324_0	chr12	-	179	1	Intergenic	novelGene_4975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAACAAAAA	1017	False	NA	NA	False	NA	NA	NA	51761086	51760907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_51760900_51761100
PB_novel_09326_0	chr12	-	164	1	Intergenic	novelGene_4976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAACATTAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	51775109	51774945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_51774900_51775100
PB_novel_09330_0	chr12	+	168	1	Intergenic	novelGene_4977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCTTTTTTAAAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	51859637	51859805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_51859600_51859800
PB_novel_09332_1	chr12	-	170	1	Intergenic	novelGene_4978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATAAATCTTTTTTT	8305	False	NA	NA	False	NA	NA	NA	51931629	51931459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_51931500_51931600
PB_novel_09338_0	chr12	+	207	1	Intergenic	novelGene_4979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACATCAAATTTAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-4	NA	52020388	52020595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_52020400_52020600
PB_novel_09346_0	chr12	+	6653	1	NIC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	1293	-21617	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	52564152	52570805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_52564200_52570800
PB_novel_09348_0	chr12	+	4610	1	NIC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	38704	-8462	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52601563	52606173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_52601600_52606200
PB_novel_09353_0	chr12	+	161	1	Intergenic	novelGene_4980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGTCTTTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52642664	52642825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_52642700_52642800
PB_novel_09359_0	chr12	+	2805	1	Antisense	novelGene_ENSMUSG00000035105.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCTCGAAAAAAACAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	54226863	54229668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_54226900_54229700
PB_novel_09368_0	chr12	+	175	1	Intergenic	novelGene_4981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAAAGTAAAAACTT	NA	False	NA	NA	False	NA	NA	NA	54716266	54716441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_54716300_54716400
PB_novel_09376_0	chr12	-	173	1	Intergenic	novelGene_4982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATAAATCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	54779996	54779823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_54779800_54780000
PB_novel_09384_0	chr12	+	177	1	Intergenic	novelGene_4984	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATGCAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	54852004	54852181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_54852000_54852200
PB_novel_09386_0	chr12	-	178	1	Intergenic	novelGene_4985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATACATC	9093	False	NA	NA	False	NA	NA	NA	54853993	54853815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_54853800_54854000
PB_novel_09391_0	chr12	-	175	1	Intergenic	novelGene_4986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATTTTAAAAAGA	6549	False	NA	NA	False	NA	NA	NA	54916573	54916398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_54916400_54916600
PB_novel_09395_0	chr12	+	174	1	Intergenic	novelGene_4987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54920793	54920967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_54920800_54921000
PB_novel_09401_0	chr12	-	176	1	Intergenic	novelGene_4988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTTAAAAAAAAGAAAATA	9221	False	NA	NA	False	NA	NA	NA	54989910	54989734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_54989700_54989900
PB_novel_09402_0	chr12	+	174	1	Intergenic	novelGene_4989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATAAAGAATTAAG	NA	False	NA	NA	False	NA	NA	NA	55026510	55026684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_55026500_55026700
PB_novel_09406_0	chr12	-	176	1	Intergenic	novelGene_4990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	177	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAGCA	NA	False	NA	NA	False	NA	NA	NA	55088789	55088613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_55088600_55088800
PB_novel_09409_0	chr12	-	741	1	FSM	ENSMUSG00000113137.2	ENSMUST00000220953.2	450	1	-49	-242	-49	242	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAATGTTCTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	55115035	55114294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_55114300_55115000
PB_novel_09416_0	chr12	+	174	1	Intergenic	novelGene_4991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55359918	55360092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_55359900_55360100
PB_novel_09417_0	chr12	-	136	1	Intergenic	novelGene_4992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAACAAAAACA	7741	False	NA	NA	False	NA	NA	NA	55368279	55368143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_55368100_55368300
PB_novel_09421_0	chr12	-	177	1	Intergenic	novelGene_4993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATAAGAATCT	8296	False	NA	NA	False	NA	NA	NA	55458072	55457895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_55457900_55458100
PB_novel_09428_2	chr12	-	172	1	Intergenic	novelGene_4994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	55663959	55663787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_55663800_55664000
PB_novel_09429_0	chr12	-	176	2	Antisense	novelGene_ENSMUSG00000045440.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	55663959	55609801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_55609928_55663909
PB_novel_09431_0	chr12	+	178	1	Intergenic	novelGene_4995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	55820197	55820375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_55820200_55820400
PB_novel_09434_0	chr12	-	2791	1	FSM	ENSMUSG00002076190.1	ENSMUST00020183529.1	91	1	-10	-2690	-10	2690	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	9951	False	NA	NA	False	NA	NA	NA	55867948	55865157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_55865200_55867900
PB_novel_09437_0	chr12	-	194	1	Intergenic	novelGene_4996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56673913	56673719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_56673700_56673900
PB_novel_09447_0	chr12	+	153	1	Intergenic	novelGene_4997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAAGGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	58976580	58976733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_58976600_58976700
PB_novel_09451_0	chr12	+	184	1	Intergenic	novelGene_4998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAATAAAAAAGAAA	8628	False	NA	NA	False	NA	NA	NA	59022064	59022248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_59022100_59022200
PB_novel_09452_0	chr12	+	179	1	Intergenic	novelGene_4999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAAAATTAGGAT	NA	False	NA	NA	False	NA	NA	NA	59030536	59030715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_59030500_59030700
PB_novel_09454_0	chr12	+	176	1	Intergenic	novelGene_5000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	101	False	NA	NA	False	NA	NA	NA	59070355	59070531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_59070400_59070500
PB_novel_09456_0	chr12	+	173	1	Intergenic	novelGene_5001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAATAAATACATAAATA	5113	False	NA	NA	False	NA	NA	NA	59077390	59077563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_59077400_59077600
PB_novel_09459_0	chr12	+	1655	1	Antisense	novelGene_ENSMUSG00000020993.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGGAAATAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59091250	59092905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_59091200_59092900
PB_novel_09460_0	chr12	+	174	1	Intergenic	novelGene_5002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAATACTATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	59094513	59094687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_59094500_59094700
PB_novel_09461_0	chr12	-	180	1	Intergenic	novelGene_5003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	59105199	59105019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_59105000_59105200
PB_novel_09465_0	chr12	-	176	1	Intergenic	novelGene_5004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAAAAAGGA	568	False	NA	NA	False	NA	NA	NA	59130718	59130542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_59130500_59130700
PB_novel_09466_1	chr12	-	188	1	Intergenic	novelGene_5006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAACAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	59147572	59147384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_59147400_59147600
PB_novel_09467_0	chr12	-	179	1	Intergenic	novelGene_5005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAATAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	59145940	59145761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_59145800_59145900
PB_novel_09475_0	chr12	+	177	1	Intergenic	novelGene_5007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60033460	60033637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_60033500_60033600
PB_novel_09476_0	chr12	-	175	1	Intergenic	novelGene_5008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGATACATAAGGA	NA	False	NA	NA	False	NA	NA	NA	60539193	60539018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_60539000_60539200
PB_novel_09491_0	chr12	+	2745	2	Antisense	novelGene_ENSMUSG00000020949.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAATAAATAAAT	1193	False	NA	NA	False	NA	NA	NA	65114289	65117875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_65115886_65116726
PB_novel_09498_0	chr12	-	177	1	Intergenic	novelGene_5009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	65194942	65194765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_65194800_65194900
PB_novel_09500_0	chr12	+	240	1	Intergenic	novelGene_5010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATCTAAGGACC	NA	False	NA	NA	False	NA	NA	NA	65219977	65220217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_65220000_65220200
PB_novel_09504_0	chr12	-	175	1	Intergenic	novelGene_5011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGCTAG	NA	False	NA	NA	False	NA	NA	NA	68200911	68200736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_68200700_68200900
PB_novel_09508_0	chr12	+	175	1	Intergenic	novelGene_5012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAGGAAAGGAAAGGA	357	False	NA	NA	False	NA	NA	NA	69123337	69123512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_69123300_69123500
PB_novel_09511_0	chr12	-	171	1	Intergenic	novelGene_5013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAGAAGTTATA	NA	False	NA	NA	False	NA	NA	NA	69184544	69184373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_69184400_69184500
PB_novel_09512_1	chr12	-	175	1	Intergenic	novelGene_5015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69214074	69213899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_69213900_69214100
PB_novel_09513_0	chr12	-	175	1	Intergenic	novelGene_5014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGAATGA	NA	False	NA	NA	False	NA	NA	NA	69185664	69185489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_69185500_69185700
PB_novel_09522_0	chr12	-	177	2	Intergenic	novelGene_5016	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAGGTAA	6025	False	NA	NA	False	NA	NA	NA	69316270	69260417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_69260488_69316163
PB_novel_09526_0	chr12	-	175	1	Intergenic	novelGene_5017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAATATTTAAACATT	6026	False	NA	NA	False	NA	NA	NA	69316269	69316094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_69316100_69316300
PB_novel_09529_0	chr12	+	173	1	Intergenic	novelGene_5018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	69349603	69349776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_69349600_69349800
PB_novel_09534_0	chr12	+	175	1	Intergenic	novelGene_5019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	69386856	69387031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_69386900_69387000
PB_novel_09535_0	chr12	+	154	1	Intergenic	novelGene_5020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	69394542	69394696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_69394500_69394700
PB_novel_09537_0	chr12	+	178	1	Intergenic	novelGene_5021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	69397260	69397438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_69397300_69397400
PB_novel_09552_0	chr12	+	177	1	Intergenic	novelGene_5022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	69710596	69710773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_69710600_69710800
PB_novel_09554_0	chr12	-	171	1	Intergenic	novelGene_5023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAAGAGCAGACT	NA	False	NA	NA	False	NA	NA	NA	69733219	69733048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_69733000_69733200
PB_novel_09558_0	chr12	+	1446	1	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	0	-11555	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	69771757	69773203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_69771800_69773200
PB_novel_09563_0	chr12	-	157	1	Intergenic	novelGene_5025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATAAAAATAAATCTTAAA	NA	False	NA	NA	False	NA	NA	NA	69991455	69991298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_69991300_69991500
PB_novel_09567_0	chr12	+	212	1	Intergenic	novelGene_5024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAGGATCAGAGGATA	NA	False	NA	NA	False	AATAAA	-6	NA	69978028	69978240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_69978000_69978200
PB_novel_09573_0	chr12	+	175	1	Intergenic	novelGene_5026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	70286800	70286975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_70286800_70287000
PB_novel_09580_0	chr12	-	173	1	Intergenic	novelGene_5027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATCTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70834252	70834079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_70834100_70834300
PB_novel_09582_0	chr12	-	2242	1	Intergenic	novelGene_5028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70901950	70899708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_70899700_70902000
PB_novel_09587_0	chr12	+	177	1	Intergenic	novelGene_5029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAAGTAGGTTGCA	2262	False	NA	NA	False	NA	NA	NA	70977247	70977424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_70977200_70977400
PB_novel_09593_0	chr12	-	174	1	Intergenic	novelGene_5030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	71040638	71040464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_71040500_71040600
PB_novel_09596_0	chr12	+	173	2	Antisense	novelGene_ENSMUSG00000085622.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	1838	False	NA	NA	False	NA	NA	NA	71050233	71050642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_71050253_71050488
PB_novel_09596_1	chr12	+	181	1	Intergenic	novelGene_5031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	2074	False	NA	NA	False	NA	NA	NA	71050469	71050650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_71050500_71050600
PB_novel_09597_0	chr12	+	2841	1	Intergenic	novelGene_5032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4796	False	NA	NA	False	AAAAAG	-43	NA	71053191	71056032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_71053200_71056000
PB_novel_09600_0	chr12	-	1767	1	FSM	ENSMUSG00000085622.10	ENSMUST00000222159.2	1790	1	8	15	8	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	71062361	71060594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_71060600_71062400
PB_novel_09603_0	chr12	-	171	1	Intergenic	novelGene_5033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCTTAAAACAAAACAAAAC	2050	False	NA	NA	False	NA	NA	NA	71112038	71111867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_71111900_71112000
PB_novel_09604_1	chr12	+	174	1	Intergenic	novelGene_5034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAATTTAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	71122923	71123097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_71122900_71123100
PB_novel_09610_0	chr12	-	170	1	Intergenic	novelGene_5035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAGAAACAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	71161904	71161734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_71161700_71161900
PB_novel_09612_0	chr12	-	176	1	Intergenic	novelGene_5036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71186399	71186223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_71186200_71186400
PB_novel_09613_0	chr12	+	145	1	Intergenic	novelGene_5037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CATAGAAATTAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	71198998	71199143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_71199000_71199100
PB_novel_09615_0	chr12	+	175	1	Intergenic	novelGene_5038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	71230282	71230457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_71230300_71230500
PB_novel_09616_0	chr12	-	1785	1	Intergenic	novelGene_5039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-35	NA	71233704	71231919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_71231900_71233700
PB_novel_09618_0	chr12	+	176	1	Intergenic	novelGene_5040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATTATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71269323	71269499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_71269300_71269500
PB_novel_09622_0	chr12	-	174	1	Intergenic	novelGene_5041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAGAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	71352540	71352366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_71352400_71352500
PB_novel_09625_0	chr12	-	176	1	Intergenic	novelGene_5042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71491740	71491564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_71491600_71491700
PB_novel_09628_0	chr12	+	169	1	Intergenic	novelGene_5043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	258	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	71845800	71845969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_71845800_71846000
PB_novel_09646_2	chr12	+	170	2	Intergenic	novelGene_5044	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAACAAACAAACAATTTAA	NA	False	NA	NA	False	NA	NA	NA	72661220	72819387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_72661344_72819340
PB_novel_09650_0	chr12	+	177	1	Intergenic	novelGene_5045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	3583	False	NA	NA	False	NA	NA	NA	72739460	72739637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_72739500_72739600
PB_novel_09654_0	chr12	-	197	1	Intergenic	novelGene_5046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	72795083	72794886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_72794900_72795100
PB_novel_09666_0	chr12	+	177	1	Intergenic	novelGene_5047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAGAAGAAGAAAT	3124	False	NA	NA	False	NA	NA	NA	73047656	73047833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_73047700_73047800
PB_novel_09668_0	chr12	+	176	1	Intergenic	novelGene_5048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	73072843	73073019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_73072800_73073000
PB_novel_09673_0	chr12	+	132	1	Intergenic	novelGene_5049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73143169	73143301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_73143200_73143300
PB_novel_09675_0	chr12	-	177	1	Intergenic	novelGene_5050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAATAG	NA	False	NA	NA	False	NA	NA	NA	73184883	73184706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_73184700_73184900
PB_novel_09676_0	chr12	-	176	1	Intergenic	novelGene_5051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATAGTA	4781	False	NA	NA	False	NA	NA	NA	73198500	73198324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_73198300_73198500
PB_novel_09681_0	chr12	-	186	1	Intergenic	novelGene_5052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73308949	73308763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_73308800_73308900
PB_novel_09690_0	chr12	-	221	1	Intergenic	novelGene_5053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGACAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73955376	73955155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_73955200_73955400
PB_novel_09692_0	chr12	+	185	1	Intergenic	novelGene_5054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAATTAAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	73983099	73983284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_73983100_73983300
PB_novel_09697_0	chr12	+	174	1	Intergenic	novelGene_5055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACAATGCAGCT	NA	False	NA	NA	False	NA	NA	NA	75560698	75560872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_75560700_75560900
PB_novel_09701_1	chr12	+	180	1	Intergenic	novelGene_5056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	75663419	75663599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_75663400_75663600
PB_novel_09709_0	chr12	-	175	1	Intergenic	novelGene_5057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAAATCAGCATT	NA	False	NA	NA	False	NA	NA	NA	75778975	75778800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_75778800_75779000
PB_novel_09711_0	chr12	-	156	1	Intergenic	novelGene_5058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAAAAATTTTAC	NA	False	NA	NA	False	NA	NA	NA	75819206	75819050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_75819000_75819200
PB_novel_09715_0	chr12	-	140	1	Intergenic	novelGene_5059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAAAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	76125046	76124906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_76124900_76125000
PB_novel_09717_0	chr12	+	153	1	Intergenic	novelGene_5060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATCTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76215039	76215192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_76215000_76215200
PB_novel_09724_0	chr12	+	182	1	Intergenic	novelGene_5061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76283111	76283293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_76283100_76283300
PB_novel_09726_0	chr12	+	1901	1	Genic_Genomic	ENSMUSG00000021048.8	novel	NA	NA	NA	NA	15084	1470	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76317337	76319238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_+_76317300_76319200
PB_novel_09729_0	chr12	-	175	1	Intergenic	novelGene_5062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAAGTCAAAT	NA	False	NA	NA	False	NA	NA	NA	76406561	76406386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_76406400_76406600
PB_novel_09736_0	chr12	+	181	1	Intergenic	novelGene_5063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAACCTTGCACA	NA	False	NA	NA	False	NA	NA	NA	76456808	76456989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_76456800_76457000
PB_novel_09738_0	chr12	+	176	1	Intergenic	novelGene_5064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTTT	1357	False	NA	NA	False	NA	NA	NA	76499334	76499510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_76499300_76499500
PB_novel_09742_0	chr12	+	172	1	Intergenic	novelGene_5065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAGAAGAAGAAGGAG	4835	False	NA	NA	False	NA	NA	NA	76551917	76552089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_76551900_76552100
PB_novel_09753_0	chr12	+	158	1	Intergenic	novelGene_5066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGTAAAAAAATAAATAAATC	4894	False	NA	NA	False	NA	NA	NA	76770744	76770902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_76770700_76770900
PB_novel_09755_0	chr12	+	171	1	Intergenic	novelGene_5067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	76824276	76824447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_76824300_76824400
PB_novel_09756_0	chr12	-	174	1	Intergenic	novelGene_5068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACCCAAAAAC	NA	False	NA	NA	False	NA	NA	NA	76826454	76826280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_76826300_76826500
PB_novel_09760_0	chr12	-	175	1	Intergenic	novelGene_5069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGATTAAAATATT	NA	False	NA	NA	False	NA	NA	NA	76877727	76877552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_76877600_76877700
PB_novel_09761_0	chr12	+	4372	1	NIC	ENSMUSG00000033373.17	novel	2613	12	NA	NA	2	-2883	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	76884208	76888580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_76884200_76888600
PB_novel_09764_0	chr12	-	174	1	Intergenic	novelGene_5070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAATAAAATAAAAT	7316	False	NA	NA	False	NA	NA	NA	76932770	76932596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_76932600_76932800
PB_novel_09766_0	chr12	+	168	1	Intergenic	novelGene_5071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAATGACTTCATAG	NA	False	NA	NA	False	NA	NA	NA	76950287	76950455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_76950300_76950500
PB_novel_09773_0	chr12	+	159	1	Intergenic	novelGene_5072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAACAAACAAATAAATA	8451	False	NA	NA	False	NA	NA	NA	77186198	77186357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_77186200_77186400
PB_novel_09784_0	chr12	+	166	1	Intergenic	novelGene_5073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAAAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	78603107	78603273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_78603100_78603300
PB_novel_09787_0	chr12	-	177	1	Intergenic	novelGene_5074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9004	False	NA	NA	False	NA	NA	NA	78852634	78852457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_78852500_78852600
PB_novel_09790_0	chr12	+	177	1	Intergenic	novelGene_5075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACCACCATAG	NA	False	NA	NA	False	NA	NA	NA	78877021	78877198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_78877000_78877200
PB_novel_09799_0	chr12	+	3072	1	NIC	ENSMUSG00000060716.8	novel	6439	29	NA	NA	46	-18026	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	6171	False	NA	NA	False	NA	NA	NA	79075982	79079054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_79076000_79079100
PB_novel_09805_1	chr12	+	173	1	Intergenic	novelGene_5076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAACAAAAAA	7073	False	NA	NA	False	NA	NA	NA	79262385	79262558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_79262400_79262600
PB_novel_09809_0	chr12	+	183	1	Intergenic	novelGene_5077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCCA	8014	False	NA	NA	False	NA	NA	NA	79335258	79335441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_79335300_79335400
PB_novel_09816_0	chr12	-	4232	1	Intergenic	novelGene_5078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGGCAAAAAAA	NA	False	NA	NA	False	AATAAA	-21	NA	79577301	79573069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_79573100_79577300
PB_novel_09821_0	chr12	+	179	1	Intergenic	novelGene_5079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	3237	False	NA	NA	False	NA	NA	NA	79765617	79765796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_79765600_79765800
PB_novel_09823_0	chr12	+	2887	1	Intergenic	novelGene_5080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-27	NA	79851855	79854742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_79851900_79854700
PB_novel_09833_0	chr12	+	180	1	Intergenic	novelGene_5081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGATATTGTACTA	NA	False	NA	NA	False	NA	NA	NA	80222213	80222393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_80222200_80222400
PB_novel_09841_0	chr12	-	173	1	Intergenic	novelGene_5082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	80419827	80419654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_80419700_80419800
PB_novel_09844_0	chr12	-	158	1	Intergenic	novelGene_5083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAATCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80490142	80489984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_80490000_80490100
PB_novel_09849_0	chr12	+	171	1	Intergenic	novelGene_5084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAGAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	80517642	80517813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_80517600_80517800
PB_novel_09853_0	chr12	+	177	1	Intergenic	novelGene_5085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	80543057	80543234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_80543100_80543200
PB_novel_09855_0	chr12	-	177	1	Intergenic	novelGene_5086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATACCAGGAGA	NA	False	NA	NA	False	NA	NA	NA	80563039	80562862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_80562900_80563000
PB_novel_09863_0	chr12	-	164	1	Intergenic	novelGene_5087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAAAAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	80679648	80679484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_80679500_80679600
PB_novel_09866_0	chr12	+	176	1	Intergenic	novelGene_5088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7439	False	NA	NA	False	NA	NA	NA	80700119	80700295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_80700100_80700300
PB_novel_09871_0	chr12	-	176	1	Intergenic	novelGene_5089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACAATACCCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	80826211	80826035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_80826000_80826200
PB_novel_09875_0	chr12	-	3182	1	Intergenic	novelGene_5090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	9525	False	NA	NA	False	NA	NA	NA	80914892	80911710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_80911700_80914900
PB_novel_09878_0	chr12	-	179	1	Intergenic	novelGene_5091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGTCACATTACAG	4401	False	NA	NA	False	NA	NA	NA	80964392	80964213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_80964200_80964400
PB_novel_09880_0	chr12	-	176	1	Intergenic	novelGene_5092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	507	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATAAAAACAAAACTTTAAA	NA	False	NA	NA	False	NA	NA	NA	80972491	80972315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_80972300_80972500
PB_novel_09881_0	chr12	-	176	1	Intergenic	novelGene_5093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAAAATAAAGATAA	NA	False	NA	NA	False	NA	NA	NA	80977690	80977514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_80977500_80977700
PB_novel_09887_0	chr12	-	2519	1	Intergenic	novelGene_5094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81091966	81089447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_81089400_81092000
PB_novel_09898_1	chr12	-	220	1	Intergenic	novelGene_5095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	527	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	AATAAA	-14	NA	81669930	81669710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_81669700_81669900
PB_novel_09905_0	chr12	+	1159	1	Intergenic	novelGene_5096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81810744	81811903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_81810700_81811900
PB_novel_09912_0	chr12	-	180	1	Intergenic	novelGene_5097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	81925666	81925486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_81925500_81925700
PB_novel_09916_0	chr12	-	179	1	Intergenic	novelGene_5098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	82203590	82203411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_82203400_82203600
PB_novel_09919_0	chr12	+	167	1	Intergenic	novelGene_5099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAATAATA	NA	False	NA	NA	False	NA	NA	NA	82466661	82466828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_82466700_82466800
PB_novel_09920_0	chr12	+	189	1	Intergenic	novelGene_5100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82500005	82500194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_82500000_82500200
PB_novel_09925_0	chr12	+	178	1	Intergenic	novelGene_5101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAACAAATT	4507	False	NA	NA	False	NA	NA	NA	83525070	83525248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_83525100_83525200
PB_novel_09926_0	chr12	+	161	1	Intergenic	novelGene_5102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAGTCCTTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83558526	83558687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_83558500_83558700
PB_novel_09935_0	chr12	+	178	1	Intergenic	novelGene_5103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGCCAG	1110	False	NA	NA	False	NA	NA	NA	83633696	83633874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_83633700_83633900
PB_novel_09936_0	chr12	+	175	1	Intergenic	novelGene_5104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	4429	False	NA	NA	False	NA	NA	NA	83637015	83637190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_83637000_83637200
PB_novel_09938_0	chr12	-	172	1	Intergenic	novelGene_5105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATGGA	NA	False	NA	NA	False	NA	NA	NA	83649897	83649725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_83649700_83649900
PB_novel_09939_0	chr12	+	171	1	Intergenic	novelGene_5106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAAATATCTGA	1093	False	NA	NA	False	NA	NA	NA	83652399	83652570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_83652400_83652600
PB_novel_09940_0	chr12	-	159	1	Intergenic	novelGene_5107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATAAATATTTAA	5507	False	NA	NA	False	NA	NA	NA	83662984	83662825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_83662800_83663000
PB_novel_09946_2	chr12	-	1060	2	Antisense	novelGene_ENSMUSG00000010608.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	3	53	junction_1	0	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	83682687	83681409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_83681690_83681907
PB_novel_09949_0	chr12	-	2750	1	Antisense	novelGene_ENSMUSG00000010608.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83691026	83688276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_83688300_83691000
PB_novel_09951_0	chr12	-	175	1	Intergenic	novelGene_5108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83694136	83693961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_83694000_83694100
PB_novel_09952_1	chr12	-	183	2	Antisense	novelGene_ENSMUSG00000113999.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAACTTTAAAAAA	7342	False	NA	NA	False	NA	NA	NA	83812602	83798203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_83798230_83812445
PB_novel_09952_3	chr12	-	187	1	Intergenic	novelGene_5110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAAG	7342	False	NA	NA	False	NA	NA	NA	83812602	83812415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_83812400_83812600
PB_novel_09954_0	chr12	-	1880	1	Intergenic	novelGene_5109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83732070	83730190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_83730200_83732100
PB_novel_09964_0	chr12	+	4147	1	Antisense	novelGene_ENSMUSG00000021224.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACCAAAACCAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	83901736	83905883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_83901700_83905900
PB_novel_09968_0	chr12	-	175	1	Intergenic	novelGene_5111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAGTA	655	False	NA	NA	False	NA	NA	NA	83984197	83984022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_83984000_83984200
PB_novel_09969_0	chr12	+	172	1	Intergenic	novelGene_5112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAAAAAGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	84005345	84005517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_84005300_84005500
PB_novel_09971_0	chr12	-	173	1	Intergenic	novelGene_5113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAACAAAACT	NA	False	NA	NA	False	NA	NA	NA	84044817	84044644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_84044600_84044800
PB_novel_09973_0	chr12	-	167	1	Intergenic	novelGene_5114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	84069206	84069039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_84069000_84069200
PB_novel_09985_0	chr12	+	154	1	Intergenic	novelGene_5115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATATTAA	NA	False	NA	NA	False	NA	NA	NA	84272036	84272190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_84272000_84272200
PB_novel_09987_0	chr12	-	4109	1	Intergenic	novelGene_5116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84282498	84278389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_84278400_84282500
PB_novel_09988_0	chr12	-	168	1	Intergenic	novelGene_5117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84283982	84283814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_84283800_84284000
PB_novel_09991_0	chr12	-	169	1	Intergenic	novelGene_5118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAACCCAAAGCAACA	NA	False	NA	NA	False	NA	NA	NA	84294903	84294734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_84294700_84294900
PB_novel_09997_0	chr12	-	173	1	Antisense	novelGene_ENSMUSG00000042472.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	5402	False	NA	NA	False	NA	NA	NA	84377160	84376987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_84377000_84377200
PB_novel_10001_0	chr12	+	180	1	Intergenic	novelGene_5119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	84450939	84451119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_84450900_84451100
PB_novel_10002_0	chr12	-	176	1	Intergenic	novelGene_5120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	293	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84451400	84451224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_84451200_84451400
PB_novel_10004_0	chr12	+	176	1	Intergenic	novelGene_5121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84468018	84468194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_84468000_84468200
PB_novel_10010_0	chr12	+	176	1	Intergenic	novelGene_5122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAATAATGCATTT	NA	False	NA	NA	False	NA	NA	NA	84556729	84556905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_84556700_84556900
PB_novel_10012_0	chr12	+	268	1	Intergenic	novelGene_5123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	84586578	84586846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_84586600_84586800
PB_novel_10020_0	chr12	+	176	1	Intergenic	novelGene_5124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAACCA	NA	False	NA	NA	False	NA	NA	NA	84670152	84670328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_84670200_84670300
PB_novel_10023_0	chr12	+	176	1	Intergenic	novelGene_5125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	84706789	84706965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_84706800_84707000
PB_novel_10029_0	chr12	+	177	1	Intergenic	novelGene_5127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	316	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACTGAAG	3861	False	NA	NA	False	NA	NA	NA	85033815	85033992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_85033800_85034000
PB_novel_10031_0	chr12	-	178	1	Intergenic	novelGene_5128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATAAATAAACTCA	NA	False	NA	NA	False	NA	NA	NA	85039903	85039725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_85039700_85039900
PB_novel_10036_0	chr12	+	171	1	Intergenic	novelGene_5129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAGAAA	4261	False	NA	NA	False	NA	NA	NA	85115429	85115600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_85115400_85115600
PB_novel_10043_0	chr12	+	170	1	Intergenic	novelGene_5130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAATATTTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85325384	85325554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_85325400_85325600
PB_novel_10055_0	chr12	-	178	1	Intergenic	novelGene_5131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAAAACCCAAACCT	NA	False	NA	NA	False	NA	NA	NA	85717446	85717268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_85717300_85717400
PB_novel_10059_0	chr12	-	174	1	Intergenic	novelGene_5132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	85831502	85831328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_85831300_85831500
PB_novel_10070_0	chr12	-	172	1	Intergenic	novelGene_5133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	86023160	86022988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_86023000_86023200
PB_novel_10082_0	chr12	-	177	1	Intergenic	novelGene_5134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATGAGT	NA	False	NA	NA	False	NA	NA	NA	86499237	86499060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_86499100_86499200
PB_novel_10083_0	chr12	+	3763	1	NIC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	28	-36060	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86516918	86520681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_86516900_86520700
PB_novel_10087_0	chr12	-	1322	1	Intergenic	novelGene_5135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAACAACAACAGC	NA	False	NA	NA	False	NA	NA	NA	86541892	86540570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_86540600_86541900
PB_novel_10092_0	chr12	-	181	1	Intergenic	novelGene_5136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATATTTAAAATAA	NA	False	NA	NA	False	NA	NA	NA	86643633	86643452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_86643500_86643600
PB_novel_10102_0	chr12	-	176	1	Intergenic	novelGene_5137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8864	False	NA	NA	False	NA	NA	NA	86888158	86887982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_86888000_86888200
PB_novel_10103_0	chr12	+	171	1	Intergenic	novelGene_5138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGACTCT	517	False	NA	NA	False	NA	NA	NA	86892132	86892303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_86892100_86892300
PB_novel_10104_0	chr12	-	180	1	Intergenic	novelGene_5139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGGAAAC	3852	False	NA	NA	False	NA	NA	NA	86893170	86892990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_86893000_86893200
PB_novel_10106_0	chr12	-	168	1	Intergenic	novelGene_5140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATTTCAGGAGTC	NA	False	NA	NA	False	NA	NA	NA	86908355	86908187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_86908200_86908400
PB_novel_10107_0	chr12	+	171	1	Intergenic	novelGene_5141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGACACTATCAT	6466	False	NA	11	True	NA	NA	NA	86909171	86909342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_86909200_86909300
PB_novel_10110_0	chr12	+	175	1	Intergenic	novelGene_5142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAGAAAAAAAAAA	7163	False	NA	NA	False	NA	NA	NA	86959903	86960078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_86959900_86960100
PB_novel_10113_0	chr12	-	176	1	Intergenic	novelGene_5143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAATGTTAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	87004530	87004354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_87004400_87004500
PB_novel_10114_0	chr12	+	175	1	Intergenic	novelGene_5144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAACAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	87100362	87100537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_87100400_87100500
PB_novel_10116_0	chr12	+	1664	1	NIC	ENSMUSG00000021033.12	novel	1656	9	NA	NA	4	-7533	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGCCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87194495	87196159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_87194500_87196200
PB_novel_10118_0	chr12	-	172	1	Intergenic	novelGene_5145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAAAGAAATACA	NA	False	NA	NA	False	NA	NA	NA	87241460	87241288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_87241300_87241500
PB_novel_10125_0	chr12	+	173	1	Intergenic	novelGene_5146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAACAAAACAAAAC	7382	False	NA	NA	False	NA	NA	NA	87274110	87274283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_87274100_87274300
PB_novel_10133_6	chr12	+	2621	1	Intergenic	novelGene_5147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATATGAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87346644	87349265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_87346600_87349300
PB_novel_10137_0	chr12	-	175	1	Intergenic	novelGene_5148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAAATAAAAT	6094	False	NA	NA	False	NA	NA	NA	87362931	87362756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_87362800_87362900
PB_novel_10139_0	chr12	+	180	1	Intergenic	novelGene_5149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATTAAAAAA	8265	False	NA	NA	False	NA	NA	NA	87382169	87382349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_87382200_87382300
PB_novel_10140_0	chr12	-	177	1	Intergenic	novelGene_5150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87430344	87430167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_87430200_87430300
PB_novel_10145_0	chr12	+	190	1	Intergenic	novelGene_5151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACAAAACATTATTTT	NA	False	NA	-16	True	NA	NA	NA	87504457	87504647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_87504500_87504600
PB_novel_10146_0	chr12	-	180	1	Intergenic	novelGene_5152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87508262	87508082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_87508100_87508300
PB_novel_10168_0	chr12	+	513	1	Intergenic	novelGene_5153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91296482	91296995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_91296500_91297000
PB_novel_10170_0	chr12	-	141	1	Intergenic	novelGene_5154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGCCATATAGAA	NA	False	NA	NA	False	NA	NA	NA	91312332	91312191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_91312200_91312300
PB_novel_10172_6	chr12	+	3869	9	Antisense	novelGene_ENSMUSG00000080365.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91523833	91556383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_91526626_91529682_91529772_91534312_91534633_91534908_91535044_91536532_91536613_91539339_91539408_91542357_91542566_91553473_91553576_91556308
PB_novel_10173_0	chr12	+	962	1	Antisense	novelGene_ENSMUSG00000020962.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAACAAACAAAATTAA	NA	False	NA	NA	False	ATTAAA	-27	NA	91523833	91524795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_91523800_91524800
PB_novel_10174_0	chr12	-	4929	2	Intergenic	novelGene_5155	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	1	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	8148	False	NA	NA	False	NA	NA	NA	91549880	91544735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_91545415_91545630
PB_novel_10180_0	chr12	-	175	1	Intergenic	novelGene_5156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATT	NA	False	NA	NA	False	NA	NA	NA	91925944	91925769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_91925800_91925900
PB_novel_10187_0	chr12	-	176	1	Intergenic	novelGene_5157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	94244092	94243916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_94243900_94244100
PB_novel_10197_0	chr12	+	171	1	Intergenic	novelGene_5158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTTAAAAAAAACTTTAAT	NA	False	NA	NA	False	NA	NA	NA	98560909	98561080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_98560900_98561100
PB_novel_10202_0	chr12	+	172	1	Intergenic	novelGene_5159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	98670894	98671066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_98670900_98671100
PB_novel_10206_0	chr12	+	2871	1	NIC	ENSMUSG00000021012.17	novel	3514	17	NA	NA	-3132	-922	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAGAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	98746457	98749328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_98746500_98749300
PB_novel_10211_0	chr12	+	172	1	Intergenic	novelGene_5160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGCCTAAGA	NA	False	NA	NA	False	NA	NA	NA	98970679	98970851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_98970700_98970900
PB_novel_10213_0	chr12	-	174	1	Intergenic	novelGene_5161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	99143768	99143594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_99143600_99143800
PB_novel_10215_0	chr12	+	2574	1	Intergenic	novelGene_5162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAACAACAACAA	NA	False	NA	NA	False	NA	NA	NA	99213881	99216455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_99213900_99216500
PB_novel_10220_0	chr12	+	176	1	Intergenic	novelGene_5163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACAGACTACA	NA	False	NA	NA	False	NA	NA	NA	99400922	99401098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_99400900_99401100
PB_novel_10225_0	chr12	-	179	1	Intergenic	novelGene_5164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAATCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	99531784	99531605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_99531600_99531800
PB_novel_10239_0	chr12	+	1583	1	Antisense	novelGene_ENSMUSG00000033530.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGCCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100321161	100322744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_100321200_100322700
PB_novel_10241_0	chr12	+	175	1	Intergenic	novelGene_5165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATTTAAAAACAAAT	NA	False	NA	NA	False	NA	NA	NA	100423218	100423393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_100423200_100423400
PB_novel_10253_0	chr12	-	175	1	Intergenic	novelGene_5166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	100851213	100851038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_100851000_100851200
PB_novel_10254_0	chr12	+	176	1	Intergenic	novelGene_5167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	384	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACACTC	NA	False	NA	NA	False	NA	NA	NA	100882638	100882814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_100882600_100882800
PB_novel_10258_0	chr12	+	180	1	Intergenic	novelGene_5168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101003314	101003494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_101003300_101003500
PB_novel_10259_0	chr12	-	175	1	Intergenic	novelGene_5169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAGAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101046448	101046273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_101046300_101046400
PB_novel_10261_0	chr12	+	169	1	Intergenic	novelGene_5170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAAG	4737	False	NA	NA	False	NA	NA	NA	101088556	101088725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_101088600_101088700
PB_novel_10263_0	chr12	+	170	1	Intergenic	novelGene_5171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	101750121	101750291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_101750100_101750300
PB_novel_10265_0	chr12	+	133	1	Intergenic	novelGene_5172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	101829147	101829280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_101829100_101829300
PB_novel_10266_0	chr12	-	175	1	Intergenic	novelGene_5173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	7607	False	NA	NA	False	NA	NA	NA	101829921	101829746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_101829700_101829900
PB_novel_10270_0	chr12	-	2584	1	NIC	ENSMUSG00000021189.12	novel	5363	11	NA	NA	-27	-22643	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101924434	101921850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_101921800_101924400
PB_novel_10284_0	chr12	+	180	1	Intergenic	novelGene_5174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	102675320	102675500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_102675300_102675500
PB_novel_10285_0	chr12	+	170	1	Intergenic	novelGene_5175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTAAAAAAGAACAATCT	NA	False	NA	NA	False	NA	NA	NA	102682099	102682269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_102682100_102682300
PB_novel_10287_0	chr12	+	173	1	Intergenic	novelGene_5176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAACTCATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102698411	102698584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_102698400_102698600
PB_novel_10293_0	chr12	+	182	1	Antisense	novelGene_ENSMUSG00000041702.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGAGTGAGG	NA	False	NA	NA	False	NA	NA	NA	102770473	102770655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_102770500_102770700
PB_novel_10294_0	chr12	+	178	1	Intergenic	novelGene_5177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACTA	NA	False	NA	NA	False	NA	NA	NA	102782734	102782912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_102782700_102782900
PB_novel_10301_0	chr12	-	175	1	Intergenic	novelGene_5178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	103486660	103486485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_103486500_103486700
PB_novel_10302_0	chr12	-	178	1	Intergenic	novelGene_5179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAAATTTTATTAC	NA	False	NA	NA	False	NA	NA	NA	103518744	103518566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_103518600_103518700
PB_novel_10314_0	chr12	-	176	1	Intergenic	novelGene_5180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	104575341	104575165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_104575200_104575300
PB_novel_10321_0	chr12	+	158	1	Intergenic	novelGene_5181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	104835838	104835996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_104835800_104836000
PB_novel_10322_0	chr12	+	140	1	Intergenic	novelGene_5182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	104923235	104923375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_104923200_104923400
PB_novel_10329_0	chr12	-	178	1	Intergenic	novelGene_5183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGACACAAGT	NA	False	NA	NA	False	NA	NA	NA	105046057	105045879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_105045900_105046100
PB_novel_10342_0	chr12	-	180	1	Intergenic	novelGene_5184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGGTTTTTATCTCA	7221	False	NA	NA	False	NA	NA	NA	105639517	105639337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_105639300_105639500
PB_novel_10348_1	chr12	+	173	1	Intergenic	novelGene_5185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATGTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105731376	105731549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_105731400_105731500
PB_novel_10350_0	chr12	+	2002	1	Intergenic	novelGene_5186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105754507	105756509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_105754500_105756500
PB_novel_10363_0	chr12	-	188	1	Intergenic	novelGene_5187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	106102400	106102212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_106102200_106102400
PB_novel_10371_0	chr12	-	177	1	Intergenic	novelGene_5188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATCCA	NA	False	NA	NA	False	NA	NA	NA	108065896	108065719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_108065700_108065900
PB_novel_10372_0	chr12	-	3432	1	Genic_Genomic	ENSMUSG00000056770.16	novel	NA	NA	NA	NA	-9	-17908	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	108145582	108142150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr12_-_108142200_108145600
PB_novel_10376_0	chr12	-	177	1	Intergenic	novelGene_5189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	108250121	108249944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_108249900_108250100
PB_novel_10380_0	chr12	-	175	1	Intergenic	novelGene_5190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAATCTTAAATAAATA	NA	False	NA	-7	True	NA	NA	NA	108444840	108444665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_108444700_108444800
PB_novel_10381_0	chr12	+	143	1	Intergenic	novelGene_5191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAATAAATAAAA	3558	False	NA	NA	False	NA	NA	NA	108498840	108498983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_108498800_108499000
PB_novel_10383_0	chr12	+	169	1	Intergenic	novelGene_5192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAACAAC	7028	False	NA	NA	False	NA	NA	NA	108561993	108562162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_108562000_108562200
PB_novel_10384_0	chr12	-	178	1	Intergenic	novelGene_5193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGAGTCAGTGC	NA	False	NA	NA	False	NA	NA	NA	108577180	108577002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_108577000_108577200
PB_novel_10393_0	chr12	-	176	1	Intergenic	novelGene_5194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	108731145	108730969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_108731000_108731100
PB_novel_10395_0	chr12	-	176	1	Intergenic	novelGene_5195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	108740206	108740030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_108740000_108740200
PB_novel_10398_0	chr12	-	181	1	Intergenic	novelGene_5196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGACTAATTAAGA	5193	False	NA	NA	False	NA	NA	NA	108789003	108788822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_108788800_108789000
PB_novel_10400_0	chr12	+	3952	1	Antisense	novelGene_ENSMUSG00000021266.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAATGAGAAAAAAAAA	147	False	NA	NA	False	NA	NA	NA	108851272	108855224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_108851300_108855200
PB_novel_10404_1	chr12	-	2137	1	Intergenic	novelGene_5197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGGCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109522478	109520341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_109520300_109522500
PB_novel_10405_0	chr12	-	4988	1	Antisense	novelGene_ENSMUSG00000021268.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGATGC	9775	False	NA	NA	False	AAAACA	-35	NA	109536127	109531139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_109531100_109536100
PB_novel_10406_0	chr12	-	2896	1	Intergenic	novelGene_5198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	9752	False	NA	NA	False	NA	NA	NA	109550349	109547453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_109547500_109550300
PB_novel_10408_0	chr12	+	2665	1	Intergenic	novelGene_5199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	-6	True	NA	NA	False	NA	NA	NA	109562305	109564970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_109562300_109565000
PB_novel_10410_0	chr12	-	2513	2	Antisense	novelGene_ENSMUSG00000080406.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATTAACCCTTT	NA	False	NA	NA	False	NA	NA	NA	109583652	109571461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_109573928_109583605
PB_novel_10410_3	chr12	-	3170	1	Antisense	novelGene_ENSMUSG00000097451.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATTAACCCTTT	NA	False	NA	NA	False	NA	NA	NA	109574631	109571461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_109571500_109574600
PB_novel_10412_0	chr12	-	990	1	Antisense	novelGene_ENSMUSG00000065757.3_AS_novelGene_ENSMUSG00000102657.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TACAGAAAAACAAACAAACA	NA	False	NA	NA	False	ACTAAA	-25	NA	109641135	109640145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_109640100_109641100
PB_novel_10424_1	chr12	+	681	2	Intergenic	novelGene_5200	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	109918169	109919674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_109918700_109919523
PB_novel_10431_0	chr12	+	160	1	Intergenic	novelGene_5201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAATAATTTAA	NA	False	NA	NA	False	NA	NA	NA	110349203	110349363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_110349200_110349400
PB_novel_10433_0	chr12	-	176	1	Intergenic	novelGene_5202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAACAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	110408662	110408486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_110408500_110408700
PB_novel_10434_0	chr12	-	175	1	Intergenic	novelGene_5203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAGGCCA	1730	False	NA	NA	False	NA	NA	NA	110433302	110433127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_110433100_110433300
PB_novel_10435_0	chr12	+	200	1	Intergenic	novelGene_5204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAATTGGGTCTTTTAAA	NA	False	NA	NA	False	AATAAA	-5	NA	110458709	110458909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_110458700_110458900
PB_novel_10442_0	chr12	+	4477	1	NIC	ENSMUSG00000018707.14	novel	14342	77	NA	NA	21	-35587	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	6492	False	NA	NA	False	NA	NA	NA	110567906	110572383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_+_110567900_110572400
PB_novel_10443_0	chr12	-	171	1	Intergenic	novelGene_5205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	110574800	110574629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_110574600_110574800
PB_novel_10445_0	chr12	-	150	1	Intergenic	novelGene_5206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAATAAATAAATTTT	NA	False	NA	NA	False	NA	NA	NA	110610510	110610360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_110610400_110610500
PB_novel_10446_0	chr12	+	177	1	Intergenic	novelGene_5207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGAGGC	1462	False	NA	NA	False	NA	NA	NA	110610814	110610991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_110610800_110611000
PB_novel_10447_0	chr12	+	177	1	Intergenic	novelGene_5215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	110796959	110797136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_110797000_110797100
PB_novel_10451_0	chr12	+	176	1	Intergenic	novelGene_5208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTAAAATAAAATAT	9410	False	NA	NA	False	NA	NA	NA	110638191	110638367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_110638200_110638400
PB_novel_10454_0	chr12	+	174	1	Intergenic	novelGene_5209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAGAAAAGAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	110646789	110646963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_110646800_110647000
PB_novel_10458_0	chr12	-	174	1	Intergenic	novelGene_5210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTTACATC	2835	False	NA	NA	False	NA	NA	NA	110679779	110679605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_110679600_110679800
PB_novel_10459_0	chr12	-	170	1	Intergenic	novelGene_5211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATATCTATCTA	4932	False	NA	NA	False	NA	NA	NA	110697724	110697554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_110697600_110697700
PB_novel_10463_0	chr12	-	177	1	Intergenic	novelGene_5212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGTCAAGACA	NA	False	NA	NA	False	NA	NA	NA	110716626	110716449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_110716400_110716600
PB_novel_10466_0	chr12	-	176	1	Intergenic	novelGene_5213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAATCTTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110754791	110754615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_110754600_110754800
PB_novel_10472_0	chr12	-	155	1	Intergenic	novelGene_5214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	110789501	110789346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_110789300_110789500
PB_novel_10475_0	chr12	+	176	1	Intergenic	novelGene_5216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAACCTCTGAT	NA	False	NA	NA	False	NA	NA	NA	110804525	110804701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_110804500_110804700
PB_novel_10477_0	chr12	+	176	1	Intergenic	novelGene_5217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACATAATAAATAAACAAAT	NA	False	NA	NA	False	NA	NA	NA	110808479	110808655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_110808500_110808700
PB_novel_10478_0	chr12	-	881	1	FSM	ENSMUSG00000091498.5	ENSMUST00000181662.2	330	1	-56	-495	-56	495	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	110825384	110824503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr12_-_110824500_110825400
PB_novel_10479_0	chr12	+	173	1	Intergenic	novelGene_5218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	110829119	110829292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_110829100_110829300
PB_novel_10484_0	chr12	+	184	1	Intergenic	novelGene_5219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAAAGAGAAAT	NA	False	NA	NA	False	NA	NA	NA	110865328	110865512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_110865300_110865500
PB_novel_10491_0	chr12	-	174	1	Intergenic	novelGene_5220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGGGGAAACTTAT	NA	False	NA	NA	False	NA	NA	NA	111037358	111037184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111037200_111037400
PB_novel_10493_0	chr12	-	179	1	Intergenic	novelGene_5221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGAATTATACTAA	NA	False	NA	NA	False	NA	NA	NA	111043851	111043672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111043700_111043900
PB_novel_10494_1	chr12	+	167	1	Intergenic	novelGene_5226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	310	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	111244380	111244547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111244400_111244500
PB_novel_10495_0	chr12	-	173	1	Intergenic	novelGene_5222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATCATTAACTAAG	NA	False	NA	NA	False	NA	NA	NA	111105028	111104855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111104900_111105000
PB_novel_10496_0	chr12	+	169	1	Intergenic	novelGene_5223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111108762	111108931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111108800_111108900
PB_novel_10496_1	chr12	+	169	2	Intergenic	novelGene_5224	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	111108762	111109156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111108876_111109100
PB_novel_10499_0	chr12	+	177	1	Intergenic	novelGene_5225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	862	False	NA	NA	False	NA	NA	NA	111161129	111161306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111161100_111161300
PB_novel_10500_0	chr12	-	4529	1	Antisense	novelGene_ENSMUSG00000021277.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	111216731	111212202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_-_111212200_111216700
PB_novel_10501_0	chr12	+	176	1	Intergenic	novelGene_5228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATATATATATATA	273	False	NA	NA	False	NA	NA	NA	111274979	111275155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111275000_111275200
PB_novel_10502_0	chr12	+	177	1	Intergenic	novelGene_5227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATGAAAACTAC	NA	False	NA	NA	False	NA	NA	NA	111244605	111244782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111244600_111244800
PB_novel_10506_0	chr12	-	178	1	Intergenic	novelGene_5229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	111318439	111318261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111318300_111318400
PB_novel_10508_0	chr12	-	5221	1	NIC	ENSMUSG00000021279.6	novel	6714	37	NA	NA	0	-32578	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111344053	111338832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr12_-_111338800_111344100
PB_novel_10515_0	chr12	-	163	1	Intergenic	novelGene_5230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAACAAAAATCTTTTA	7164	False	NA	NA	False	NA	NA	NA	111493679	111493516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111493500_111493700
PB_novel_10517_0	chr12	-	168	1	Intergenic	novelGene_5231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	1065	False	NA	NA	False	NA	NA	NA	111514667	111514499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111514500_111514700
PB_novel_10518_1	chr12	-	176	1	Intergenic	novelGene_5232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	111516392	111516216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111516200_111516400
PB_novel_10520_0	chr12	-	169	1	Intergenic	novelGene_5233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATTAAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	111521514	111521345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111521300_111521500
PB_novel_10521_0	chr12	+	94	1	Intergenic	novelGene_5234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111522376	111522470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111522400_111522500
PB_novel_10527_0	chr12	+	176	1	Intergenic	novelGene_5235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAGAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	111573502	111573678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111573500_111573700
PB_novel_10529_1	chr12	+	168	1	Intergenic	novelGene_5236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAATA	8395	False	NA	NA	False	NA	NA	NA	111582911	111583079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111582900_111583100
PB_novel_10533_0	chr12	+	173	1	Intergenic	novelGene_5237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCTCAC	NA	False	NA	NA	False	NA	NA	NA	111641164	111641337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111641200_111641300
PB_novel_10535_0	chr12	-	177	1	Intergenic	novelGene_5241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAC	3544	False	NA	NA	False	NA	NA	NA	111709657	111709480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111709500_111709700
PB_novel_10537_0	chr12	-	176	1	Intergenic	novelGene_5238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	111680496	111680320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111680300_111680500
PB_novel_10541_0	chr12	+	173	1	Intergenic	novelGene_5239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGTCACT	NA	False	NA	NA	False	NA	NA	NA	111689718	111689891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111689700_111689900
PB_novel_10547_0	chr12	-	189	1	Intergenic	novelGene_5240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	3748	False	NA	NA	False	NA	NA	NA	111709453	111709264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111709300_111709500
PB_novel_10553_0	chr12	+	178	1	Intergenic	novelGene_5242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111737605	111737783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111737600_111737800
PB_novel_10554_0	chr12	-	174	1	Intergenic	novelGene_5243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	111766416	111766242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_111766200_111766400
PB_novel_10557_0	chr12	+	1452	2	Antisense	novelGene_ENSMUSG00000021285.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111829696	111831180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr12_+_111830118_111830149
PB_novel_10558_0	chr12	+	174	1	Intergenic	novelGene_5244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111844508	111844682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_111844500_111844700
PB_novel_10582_0	chr12	-	174	1	Intergenic	novelGene_5245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAAAAAATCAA	9993	False	NA	NA	False	NA	NA	NA	112843149	112842975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_112843000_112843100
PB_novel_10593_0	chr12	+	169	1	Intergenic	novelGene_5246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAACAAACCAACCA	NA	False	NA	NA	False	NA	NA	NA	113043490	113043659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_113043500_113043700
PB_novel_10594_0	chr12	-	1219	1	Intergenic	novelGene_5247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACCAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113066383	113065164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_113065200_113066400
PB_novel_10597_0	chr12	+	141	1	Intergenic	novelGene_5248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAATTAAATATAT	5208	False	NA	NA	False	NA	NA	NA	113138726	113138867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_113138700_113138900
PB_novel_10601_0	chr12	-	168	1	Intergenic	novelGene_5249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATTAAAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	113911536	113911368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_113911400_113911500
PB_novel_10604_1	chr12	-	2138	2	Intergenic	novelGene_5250	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGACTAAGATTAAAAAAAAA	139	False	NA	NA	False	NA	NA	NA	114109337	114075446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_114075667_114107419
PB_novel_10607_0	chr12	+	180	1	Intergenic	novelGene_5251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	115936819	115936999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_115936800_115937000
PB_novel_10609_0	chr12	+	175	1	Intergenic	novelGene_5252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAGAAATGCAT	NA	False	NA	NA	False	NA	NA	NA	116036220	116036395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_116036200_116036400
PB_novel_10616_0	chr12	-	163	1	Intergenic	novelGene_5253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAATAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	116290696	116290533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_116290500_116290700
PB_novel_10628_0	chr12	-	164	1	Intergenic	novelGene_5254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	5623	False	NA	NA	False	NA	NA	NA	116751592	116751428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_116751400_116751600
PB_novel_10633_0	chr12	-	173	1	Intergenic	novelGene_5255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGACAGTAC	NA	False	NA	NA	False	NA	NA	NA	117388005	117387832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_117387800_117388000
PB_novel_10634_0	chr12	+	176	1	Intergenic	novelGene_5256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAAAAGTAGGCAT	NA	False	NA	NA	False	NA	NA	NA	117406227	117406403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_117406200_117406400
PB_novel_10636_5	chr12	+	176	1	Intergenic	novelGene_5257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	281	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	117486948	117487124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_+_117486900_117487100
PB_novel_10638_0	chr12	-	176	1	Intergenic	novelGene_5258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	117666697	117666521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_117666500_117666700
PB_novel_10649_0	chr12	-	175	1	Intergenic	novelGene_5259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTAAATTAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	118880416	118880241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_118880200_118880400
PB_novel_10657_0	chr13	-	188	1	Intergenic	novelGene_1825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	3564517	3564329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_3564300_3564500
PB_novel_10662_0	chr13	+	153	1	Intergenic	novelGene_1826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAACAATAGGAAT	NA	False	NA	NA	False	NA	NA	NA	3648062	3648215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_3648100_3648200
PB_novel_10683_0	chr13	-	175	1	Intergenic	novelGene_1827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAGATTAGGAGT	NA	False	NA	NA	False	NA	NA	NA	7191271	7191096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_7191100_7191300
PB_novel_10685_2	chr13	-	1051	1	FSM	ENSMUSG00000072421.5	ENSMUST00000159886.2	264	1	10	-797	10	797	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCTTGGAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-16	NA	8340139	8339088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_8339100_8340100
PB_novel_10692_1	chr13	-	182	1	Intergenic	novelGene_1828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAGAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	9034104	9033922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_9033900_9034100
PB_novel_10695_0	chr13	-	175	1	Intergenic	novelGene_1829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATGTTTACCTTTAA	NA	False	NA	NA	False	NA	NA	NA	9036328	9036153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_9036200_9036300
PB_novel_10696_0	chr13	+	2842	1	Antisense	novelGene_ENSMUSG00000021149.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	9039419	9042261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_9039400_9042300
PB_novel_10699_0	chr13	-	177	1	Intergenic	novelGene_1830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGATTATAAGGA	NA	False	NA	NA	False	NA	NA	NA	9051260	9051083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_9051100_9051300
PB_novel_10701_0	chr13	+	181	1	Intergenic	novelGene_1831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAGGAAAAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	9071963	9072144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_9072000_9072100
PB_novel_10706_0	chr13	+	2976	1	Intergenic	novelGene_1832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	6834	False	NA	NA	False	NA	NA	NA	9182267	9185243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_9182300_9185200
PB_novel_10708_2	chr13	+	180	1	Intergenic	novelGene_1833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	9303899	9304079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_9303900_9304100
PB_novel_10712_0	chr13	-	190	1	Intergenic	novelGene_1834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	9403622	9403432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_9403400_9403600
PB_novel_10715_0	chr13	-	173	1	Intergenic	novelGene_1835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTTAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	9454567	9454394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_9454400_9454600
PB_novel_10721_0	chr13	+	172	1	Intergenic	novelGene_1836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGCAT	NA	False	NA	NA	False	NA	NA	NA	9797828	9798000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_9797800_9798000
PB_novel_10733_0	chr13	+	2783	2	Antisense	novelGene_ENSMUSG00000021311.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12245345	12249944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_12245971_12247786
PB_novel_10734_0	chr13	+	4600	1	Antisense	novelGene_ENSMUSG00000021311.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12245345	12249945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_12245300_12249900
PB_novel_10737_0	chr13	+	176	1	Intergenic	novelGene_1837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAGATCAT	NA	False	NA	NA	False	NA	NA	NA	12296905	12297081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_12296900_12297100
PB_novel_10742_0	chr13	+	174	1	Intergenic	novelGene_1838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	12497015	12497189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_12497000_12497200
PB_novel_10747_0	chr13	+	176	1	Intergenic	novelGene_1839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	12789106	12789282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_12789100_12789300
PB_novel_10748_0	chr13	+	176	1	Intergenic	novelGene_1840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	12995996	12996172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_12996000_12996200
PB_novel_10749_0	chr13	+	176	1	Intergenic	novelGene_1841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	13154095	13154271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_13154100_13154300
PB_novel_10751_0	chr13	-	1443	1	FSM	ENSMUSG00000061724.6	ENSMUST00000074863.6	733	1	-35	-675	-35	675	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-10	NA	13407513	13406070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_13406100_13407500
PB_novel_10756_0	chr13	-	2622	1	NIC	ENSMUSG00000021306.12	novel	2971	7	NA	NA	-11	-25822	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13568160	13565538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_13565500_13568200
PB_novel_10757_0	chr13	-	201	1	Intergenic	novelGene_1842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	345	False	NA	NA	False	NA	NA	NA	13589783	13589582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_13589600_13589800
PB_novel_10760_0	chr13	-	178	1	Intergenic	novelGene_1843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTTAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	13850051	13849873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_13849900_13850100
PB_novel_10762_0	chr13	-	172	1	Intergenic	novelGene_1844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	325	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	14152839	14152667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_14152700_14152800
PB_novel_10768_0	chr13	+	179	1	Antisense	novelGene_ENSMUSG00000021302.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	14228006	14228185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_14228000_14228200
PB_novel_10769_0	chr13	+	154	1	Intergenic	novelGene_1845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	14231007	14231161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_14231000_14231200
PB_novel_10770_0	chr13	-	1876	1	NIC	ENSMUSG00000021302.11	novel	4244	4	NA	NA	8	-2426	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	14237986	14236110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_14236100_14238000
PB_novel_10775_0	chr13	+	174	1	Intergenic	novelGene_1846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGACAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	14391219	14391393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_14391200_14391400
PB_novel_10777_0	chr13	-	187	1	Intergenic	novelGene_1847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTAATATTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	14701663	14701476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_14701500_14701700
PB_novel_10779_0	chr13	-	172	1	Intergenic	novelGene_1848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	14777399	14777227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_14777200_14777400
PB_novel_10790_0	chr13	-	176	1	Intergenic	novelGene_1849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAATAT	NA	False	NA	NA	False	NA	NA	NA	17903966	17903790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_17903800_17904000
PB_novel_10792_0	chr13	+	179	1	Intergenic	novelGene_1850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAGAAGAAGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	17922837	17923016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_17922800_17923000
PB_novel_10799_0	chr13	-	176	1	Intergenic	novelGene_1851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18632931	18632755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_18632800_18632900
PB_novel_10801_0	chr13	+	160	1	Intergenic	novelGene_1852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATTAAAAAAA	8752	False	NA	NA	False	NA	NA	NA	18726435	18726595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_18726400_18726600
PB_novel_10802_0	chr13	+	180	1	Intergenic	novelGene_1853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	18738342	18738522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_18738300_18738500
PB_novel_10813_0	chr13	+	127	1	Intergenic	novelGene_1854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATTACT	NA	False	NA	NA	False	NA	NA	NA	19572167	19572294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_19572200_19572300
PB_novel_10814_0	chr13	+	5862	1	Antisense	novelGene_ENSMUSG00000003062.14_AS_novelGene_ENSMUSG00000105848.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGATTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-11	NA	19573593	19579455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_19573600_19579500
PB_novel_10818_1	chr13	-	180	1	Intergenic	novelGene_1855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATAAATATATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	20149444	20149264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_20149300_20149400
PB_novel_10825_0	chr13	-	169	1	Intergenic	novelGene_1856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAATAAAATATTTT	NA	False	NA	NA	False	NA	NA	NA	20419714	20419545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_20419500_20419700
PB_novel_10828_0	chr13	+	168	1	Intergenic	novelGene_1857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	21108537	21108705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_21108500_21108700
PB_novel_10829_0	chr13	+	175	1	Intergenic	novelGene_1858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAATAAGTCTTGGA	2483	False	NA	NA	False	NA	NA	NA	21290002	21290177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_21290000_21290200
PB_novel_10855_0	chr13	+	120	1	Intergenic	novelGene_1859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22105071	22105191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_22105100_22105200
PB_novel_10858_0	chr13	-	151	1	Intergenic	novelGene_1860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-15	NA	22119742	22119591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_22119600_22119700
PB_novel_10864_0	chr13	+	160	1	Intergenic	novelGene_1861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22200084	22200244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_22200100_22200200
PB_novel_10865_0	chr13	-	114	1	Intergenic	novelGene_1862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATTAAATGG	NA	False	NA	NA	False	NA	NA	NA	22221510	22221396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_22221400_22221500
PB_novel_10866_0	chr13	-	157	1	Intergenic	novelGene_1863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAATTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22291277	22291120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_22291100_22291300
PB_novel_10867_0	chr13	+	175	1	Intergenic	novelGene_1864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGGAACA	NA	False	NA	NA	False	NA	NA	NA	22605532	22605707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_22605500_22605700
PB_novel_10870_0	chr13	+	176	1	Intergenic	novelGene_1865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGATCTTTT	NA	False	NA	NA	False	NA	NA	NA	22894441	22894617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_22894400_22894600
PB_novel_10871_0	chr13	+	175	1	Intergenic	novelGene_1866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGATCTT	NA	False	NA	NA	False	NA	NA	NA	22974284	22974459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_22974300_22974500
PB_novel_10880_0	chr13	-	88	1	Intergenic	novelGene_1867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2326	False	NA	NA	False	AATAAA	-4	NA	23571888	23571800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_23571800_23571900
PB_novel_10882_0	chr13	+	107	1	Intergenic	novelGene_1868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATGAAACAAAACAAAAC	5545	False	NA	NA	False	NA	NA	NA	23701373	23701480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_23701400_23701500
PB_novel_10884_0	chr13	+	178	1	Intergenic	novelGene_1869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	272	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGTTAGGG	NA	False	NA	NA	False	NA	NA	NA	23724220	23724398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_23724200_23724400
PB_novel_10886_0	chr13	-	171	1	Intergenic	novelGene_1870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	3456	False	NA	NA	False	NA	NA	NA	23800226	23800055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_23800100_23800200
PB_novel_10892_2	chr13	+	4135	5	Intergenic	novelGene_1871	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24345188	24464752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_24348906_24357598_24357661_24362191_24362244_24460442_24460538_24464543
PB_novel_10896_0	chr13	+	2891	1	Intergenic	novelGene_1872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACATCAAAAAAAAAAAAAAA	4819	False	NA	NA	False	NA	NA	NA	24438890	24441781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_24438900_24441800
PB_novel_10899_0	chr13	+	180	1	Intergenic	novelGene_1873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	24875449	24875629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_24875400_24875600
PB_novel_10901_0	chr13	-	5320	1	NIC	ENSMUSG00000006715.12	novel	963	7	NA	NA	10	-2888	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	AGTAAA	-8	NA	24945896	24940576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_24940600_24945900
PB_novel_10908_0	chr13	-	176	1	Intergenic	novelGene_1875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25062807	25062631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_25062600_25062800
PB_novel_10916_0	chr13	-	1936	1	Intergenic	novelGene_1876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25377804	25375868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_25375900_25377800
PB_novel_10917_0	chr13	+	162	1	Intergenic	novelGene_1877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	25477511	25477673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_25477500_25477700
PB_novel_10918_0	chr13	+	178	1	Intergenic	novelGene_1878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25786350	25786528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_25786400_25786500
PB_novel_10922_0	chr13	+	174	1	Intergenic	novelGene_1879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	28326778	28326952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_28326800_28327000
PB_novel_10926_0	chr13	-	182	1	Intergenic	novelGene_1880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGGAGTGC	NA	False	NA	NA	False	NA	NA	NA	28862395	28862213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_28862200_28862400
PB_novel_10927_0	chr13	+	176	1	Intergenic	novelGene_1881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAATAG	NA	False	NA	NA	False	NA	NA	NA	28987450	28987626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_28987400_28987600
PB_novel_10933_0	chr13	+	167	1	Intergenic	novelGene_1882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAGAAAAAAAGAC	3107	False	NA	NA	False	NA	NA	NA	29155104	29155271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_29155100_29155300
PB_novel_10934_0	chr13	-	178	1	Intergenic	novelGene_1883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGTTTTAAAAATAGGC	NA	False	NA	NA	False	NA	NA	NA	29330704	29330526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_29330500_29330700
PB_novel_10939_0	chr13	+	178	1	Intergenic	novelGene_1884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGCTAT	5668	False	NA	NA	False	NA	NA	NA	29751339	29751517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_29751300_29751500
PB_novel_10949_0	chr13	+	3328	1	Antisense	novelGene_ENSMUSG00000006191.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-30	NA	30035676	30039004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_30035700_30039000
PB_novel_10950_0	chr13	+	176	1	Intergenic	novelGene_1886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAGGAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	30046167	30046343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_30046200_30046300
PB_novel_10954_0	chr13	+	159	1	Intergenic	novelGene_1887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACATAAATAAATAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	30244157	30244316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_30244200_30244300
PB_novel_10957_0	chr13	-	178	1	Intergenic	novelGene_1888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAGAAGAAGAAGAA	9993	False	NA	NA	False	NA	NA	NA	30782274	30782096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_30782100_30782300
PB_novel_10962_0	chr13	-	3687	1	Intergenic	novelGene_1889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAATCCAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-14	NA	31856175	31852488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_31852500_31856200
PB_novel_10963_0	chr13	+	4084	1	Intergenic	novelGene_1890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGAACAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31854333	31858417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_31854300_31858400
PB_novel_10965_0	chr13	+	174	1	Intergenic	novelGene_1891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAAGAAAGATAA	NA	False	NA	NA	False	NA	NA	NA	31867924	31868098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_31867900_31868100
PB_novel_10968_0	chr13	-	174	1	Intergenic	novelGene_1892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAATATTTAC	NA	False	NA	NA	False	NA	NA	NA	32079196	32079022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_32079000_32079200
PB_novel_10971_0	chr13	+	177	1	Intergenic	novelGene_1893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32994187	32994364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_32994200_32994400
PB_novel_10984_0	chr13	+	3396	1	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	1415	1303	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34245923	34249319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_34245900_34249300
PB_novel_10992_0	chr13	+	156	1	Intergenic	novelGene_1894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	34716314	34716470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_34716300_34716500
PB_novel_10997_0	chr13	-	207	1	Intergenic	novelGene_1895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAGCAATGTTTTA	NA	False	NA	NA	False	NA	NA	NA	35127822	35127615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_35127600_35127800
PB_novel_11000_0	chr13	-	166	1	Intergenic	novelGene_1896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATCTTTTTAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	35302425	35302259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_35302300_35302400
PB_novel_11001_1	chr13	+	173	1	Intergenic	novelGene_1897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATCTTTTAAA	328	False	NA	NA	False	NA	NA	NA	35871075	35871248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_35871100_35871200
PB_novel_11003_0	chr13	-	901	1	Intergenic	novelGene_1898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36018444	36017543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_36017500_36018400
PB_novel_11014_0	chr13	-	3277	1	Intergenic	novelGene_1899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	36420843	36417566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_36417600_36420800
PB_novel_11017_0	chr13	-	180	1	Intergenic	novelGene_1900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATAAAGTTTTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	36783308	36783128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_36783100_36783300
PB_novel_11026_0	chr13	-	171	1	Intergenic	novelGene_1901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAAGAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	37956446	37956275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_37956300_37956400
PB_novel_11027_0	chr13	+	174	1	Intergenic	novelGene_1902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGATGA	8033	False	NA	NA	False	NA	NA	NA	38018855	38019029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_38018900_38019000
PB_novel_11029_0	chr13	-	177	1	Intergenic	novelGene_1903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	405	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5573	False	NA	NA	False	NA	NA	NA	38032404	38032227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_38032200_38032400
PB_novel_11031_0	chr13	+	2435	1	Genic_Genomic	ENSMUSG00000039087.18	novel	NA	NA	NA	NA	-12501	1404	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAAATAATAAAT	9665	False	NA	NA	False	NA	NA	NA	38118490	38120925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_38118500_38120900
PB_novel_11033_0	chr13	+	344	1	Intergenic	novelGene_1904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38174782	38175126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_38174800_38175100
PB_novel_11046_1	chr13	+	3234	1	Antisense	novelGene_ENSMUSG00000038991.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGACCAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	38688583	38691817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_38688600_38691800
PB_novel_11047_0	chr13	-	175	1	Intergenic	novelGene_1905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAATTACAAGAGTATA	NA	False	NA	NA	False	NA	NA	NA	38742662	38742487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_38742500_38742700
PB_novel_11056_0	chr13	+	174	1	Intergenic	novelGene_1906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCTTTTAAAAATACATA	NA	False	NA	NA	False	NA	NA	NA	40790506	40790680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_40790500_40790700
PB_novel_11069_0	chr13	+	176	1	Intergenic	novelGene_1907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATC	2495	False	NA	NA	False	NA	NA	NA	41003805	41003981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_41003800_41004000
PB_novel_11074_0	chr13	+	157	1	Intergenic	novelGene_1908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	41069060	41069217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_41069100_41069200
PB_novel_11085_0	chr13	-	176	1	Intergenic	novelGene_1909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATGTCAACACA	5886	False	NA	NA	False	NA	NA	NA	41420117	41419941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_41419900_41420100
PB_novel_11091_0	chr13	+	175	1	Intergenic	novelGene_1910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	42137058	42137233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_42137100_42137200
PB_novel_11107_0	chr13	+	172	1	Intergenic	novelGene_1911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	43493049	43493221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_43493000_43493200
PB_novel_11108_0	chr13	-	182	1	Intergenic	novelGene_1912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTTAAAAAAAGATTAAAA	NA	False	NA	NA	False	NA	NA	NA	43496858	43496676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_43496700_43496900
PB_novel_11120_0	chr13	+	168	1	Intergenic	novelGene_1913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTAAAAAAAGCAAAAC	NA	False	NA	NA	False	NA	NA	NA	43735414	43735582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_43735400_43735600
PB_novel_11122_0	chr13	-	176	1	Intergenic	novelGene_1914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	43767416	43767240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_43767200_43767400
PB_novel_11130_0	chr13	+	185	1	Intergenic	novelGene_1915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	44539348	44539533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_44539300_44539500
PB_novel_11135_0	chr13	+	176	1	Intergenic	novelGene_1916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	270	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7766	False	NA	NA	False	NA	NA	NA	44774387	44774563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_44774400_44774600
PB_novel_11137_0	chr13	-	186	1	Intergenic	novelGene_1917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAAATATTCT	NA	False	NA	NA	False	NA	NA	NA	44810092	44809906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_44809900_44810100
PB_novel_11144_0	chr13	-	3943	18	Intergenic	novelGene_1918	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACACAAAAAAAGAAAAGAAA	5813	False	NA	NA	False	AGTAAA	-40	NA	45073374	44885055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_44885391_44976853_44976991_45001754_45001896_45027756_45027927_45038177_45038356_45049728_45049964_45055699_45056733_45059706_45060210_45060967_45061061_45063816_45063936_45064010_45064083_45064640_45064756_45066655_45066762_45067125_45067308_45067719_45067851_45068237_45068422_45069890_45069999_45073273
PB_novel_11145_0	chr13	-	168	1	Intergenic	novelGene_1919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAGAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	44907514	44907346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_44907300_44907500
PB_novel_11149_0	chr13	+	175	1	Intergenic	novelGene_1920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAATAAAATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	44920479	44920654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_44920500_44920700
PB_novel_11152_0	chr13	-	2498	1	Intergenic	novelGene_1921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	4512	False	NA	NA	False	NA	NA	NA	44942664	44940166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_44940200_44942700
PB_novel_11155_0	chr13	-	177	1	Intergenic	novelGene_1922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44965907	44965730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_44965700_44965900
PB_novel_11156_0	chr13	-	175	1	Intergenic	novelGene_1923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAGAAAAAAGAAAAGAAAAA	4714	False	NA	NA	False	NA	NA	NA	44978282	44978107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_44978100_44978300
PB_novel_11159_0	chr13	-	182	1	Intergenic	novelGene_1924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAATTACAT	NA	False	NA	NA	False	NA	NA	NA	45033732	45033550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_45033600_45033700
PB_novel_11164_0	chr13	+	3121	1	Intergenic	novelGene_1925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAGAAAACCCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45125211	45128332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_45125200_45128300
PB_novel_11166_0	chr13	-	160	1	Intergenic	novelGene_1926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAATAAATCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45174097	45173937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_45173900_45174100
PB_novel_11168_0	chr13	-	178	1	Intergenic	novelGene_1927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAACGAAAAG	NA	False	NA	NA	False	NA	NA	NA	45277893	45277715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_45277700_45277900
PB_novel_11182_0	chr13	-	3421	1	NIC	ENSMUSG00000021374.11	novel	6109	22	NA	NA	-2414	-1475	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46858020	46854599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_46854600_46858000
PB_novel_11190_0	chr13	+	153	1	Intergenic	novelGene_1928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	47060264	47060417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_47060300_47060400
PB_novel_11192_0	chr13	+	177	1	Intergenic	novelGene_1929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAAAT	6660	False	NA	NA	False	NA	NA	NA	47073115	47073292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_47073100_47073300
PB_novel_11198_0	chr13	+	186	1	Intergenic	novelGene_1930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGAATTTGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47181206	47181392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_47181200_47181400
PB_novel_11199_0	chr13	-	186	1	Intergenic	novelGene_1931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATGT	NA	False	NA	NA	False	NA	NA	NA	47212034	47211848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_47211800_47212000
PB_novel_11207_0	chr13	-	165	1	Intergenic	novelGene_1932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATCTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47561320	47561155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_47561200_47561300
PB_novel_11211_0	chr13	-	170	1	Intergenic	novelGene_1933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	271	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGATGTAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	48718339	48718169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_48718200_48718300
PB_novel_11215_0	chr13	-	5752	1	Intergenic	novelGene_1934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAATAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	49062889	49057137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_49057100_49062900
PB_novel_11216_0	chr13	-	2866	2	Intergenic	novelGene_1935	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	49062523	49059495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_49060633_49060794
PB_novel_11219_0	chr13	+	4540	1	Intergenic	novelGene_1936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACACTAAAA	NA	False	NA	NA	False	NA	NA	NA	49093571	49098111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_49093600_49098100
PB_novel_11223_3	chr13	+	177	1	Intergenic	novelGene_1937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAACAACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49145355	49145532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_49145400_49145500
PB_novel_11236_0	chr13	-	1427	1	Intergenic	novelGene_1938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49594760	49593333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_49593300_49594800
PB_novel_11246_0	chr13	+	175	1	Intergenic	novelGene_1939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAATTGGACAAA	NA	False	NA	NA	False	NA	NA	NA	49795276	49795451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_49795300_49795500
PB_novel_11268_1	chr13	-	2968	1	Intergenic	novelGene_1940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51254751	51251783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_51251800_51254800
PB_novel_11270_0	chr13	-	998	1	Antisense	novelGene_ENSMUSG00000021395.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AAGAAA	-17	NA	51306464	51305466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_-_51305500_51306500
PB_novel_11279_0	chr13	-	174	1	Intergenic	novelGene_1941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAACAAAAAC	6306	False	NA	NA	False	NA	NA	NA	51761259	51761085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_51761100_51761300
PB_novel_11284_0	chr13	-	176	1	Intergenic	novelGene_1942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	51862574	51862398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_51862400_51862600
PB_novel_11285_0	chr13	-	220	1	Intergenic	novelGene_1943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTATTTTAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-18	NA	51880865	51880645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_51880600_51880900
PB_novel_11286_0	chr13	+	167	1	Intergenic	novelGene_1944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	51881687	51881854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_51881700_51881900
PB_novel_11288_0	chr13	+	158	1	Intergenic	novelGene_1945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAACAAATAAATTTT	NA	False	NA	NA	False	NA	NA	NA	51990320	51990478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_51990300_51990500
PB_novel_11305_0	chr13	+	716	1	Intergenic	novelGene_1946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	53265764	53266480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_53265800_53266500
PB_novel_11318_0	chr13	+	174	1	Intergenic	novelGene_1947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATATTAAATGATTA	NA	False	NA	NA	False	NA	NA	NA	53597268	53597442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_53597300_53597400
PB_novel_11319_0	chr13	+	179	1	Intergenic	novelGene_1948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	53611416	53611595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_53611400_53611600
PB_novel_11325_0	chr13	-	184	1	Intergenic	novelGene_1949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	54624729	54624545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_54624500_54624700
PB_novel_11326_0	chr13	-	235	1	Intergenic	novelGene_1950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54627118	54626883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_54626900_54627100
PB_novel_11327_0	chr13	-	187	1	Intergenic	novelGene_1951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	54640503	54640316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_54640300_54640500
PB_novel_11328_0	chr13	-	89	1	Intergenic	novelGene_1952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAAAAGTACACT	NA	False	NA	-14	True	AATAAA	-14	NA	54647492	54647403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_54647400_54647500
PB_novel_11328_1	chr13	-	116	2	Genic_Genomic	ENSMUSG00000086567.2	novel	385	1	NA	NA	344	113	multi-exon	FALSE	non_canonical	2	12	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TACAAAAAAAAAAAGTACAC	NA	False	NA	-15	True	AATAAA	-13	NA	54647558	54647404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_54647486_54647523
PB_novel_11330_0	chr13	+	171	1	Intergenic	novelGene_1954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATATATAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	54779376	54779547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_54779400_54779500
PB_novel_11342_0	chr13	-	175	1	Intergenic	novelGene_1953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	54775668	54775493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_54775500_54775700
PB_novel_11343_0	chr13	-	177	1	Intergenic	novelGene_1956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGACTG	NA	False	NA	NA	False	NA	NA	NA	54808355	54808178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_54808200_54808400
PB_novel_11344_0	chr13	-	166	1	Intergenic	novelGene_1955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAATCTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54779979	54779813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_54779800_54780000
PB_novel_11350_0	chr13	-	175	1	Intergenic	novelGene_1957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTGAAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54859802	54859627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_54859600_54859800
PB_novel_11353_0	chr13	-	173	1	Intergenic	novelGene_1958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	54963369	54963196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_54963200_54963400
PB_novel_11357_0	chr13	+	167	1	Intergenic	novelGene_1959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATAAATCTTTTTT	7825	False	NA	NA	False	NA	NA	NA	55198282	55198449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55198300_55198400
PB_novel_11358_0	chr13	+	174	1	Intergenic	novelGene_1960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAACGAAAAAAC	5180	False	NA	NA	False	NA	NA	NA	55218260	55218434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55218300_55218400
PB_novel_11361_1	chr13	+	175	1	Intergenic	novelGene_1961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAATTAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	55241996	55242171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55242000_55242200
PB_novel_11362_0	chr13	+	3155	1	Intergenic	novelGene_1962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	1696	False	NA	NA	False	NA	NA	NA	55254816	55257971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55254800_55258000
PB_novel_11364_0	chr13	+	209	1	Intergenic	novelGene_1963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACCAAAATAAATAAATA	2860	False	NA	NA	False	NA	NA	NA	55293130	55293339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55293100_55293300
PB_novel_11367_0	chr13	-	174	1	Intergenic	novelGene_1964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACAAATTGA	123	False	NA	NA	False	NA	NA	NA	55329626	55329452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_55329500_55329600
PB_novel_11369_0	chr13	+	177	1	Intergenic	novelGene_1965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTTAAAAAGAAAAAAAAAA	9118	False	NA	NA	False	NA	NA	NA	55345086	55345263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55345100_55345300
PB_novel_11374_0	chr13	-	177	1	Intergenic	novelGene_1966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATATATAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	55380442	55380265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_55380300_55380400
PB_novel_11379_0	chr13	-	171	1	Intergenic	novelGene_1967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAAAATAAAT	3989	False	NA	NA	False	NA	NA	NA	55397203	55397032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_55397000_55397200
PB_novel_11382_0	chr13	+	179	1	Intergenic	novelGene_1968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACATTAAAAAAATA	3450	False	NA	NA	False	NA	NA	NA	55408533	55408712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55408500_55408700
PB_novel_11385_0	chr13	-	182	1	Intergenic	novelGene_1969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATAAATCTTTTTTA	9803	False	NA	NA	False	NA	NA	NA	55422458	55422276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_55422300_55422500
PB_novel_11386_0	chr13	+	177	1	Intergenic	novelGene_1970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	55433029	55433206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55433000_55433200
PB_novel_11387_0	chr13	+	177	1	Intergenic	novelGene_1971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATTAAG	NA	False	NA	NA	False	NA	NA	NA	55436551	55436728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55436600_55436700
PB_novel_11389_0	chr13	-	1103	1	Antisense	novelGene_ENSMUSG00000021488.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	55455177	55454074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_-_55454100_55455200
PB_novel_11391_0	chr13	+	175	1	Intergenic	novelGene_1972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGGTTGAAAT	6685	False	NA	NA	False	NA	NA	NA	55456676	55456851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55456700_55456900
PB_novel_11397_0	chr13	-	173	1	Intergenic	novelGene_1973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	333	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55538212	55538039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_55538000_55538200
PB_novel_11398_0	chr13	-	168	2	Intergenic	novelGene_1974	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	4705	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55538391	55538042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_55538163_55538343
PB_novel_11402_2	chr13	-	177	1	Intergenic	novelGene_1975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	4160	False	NA	NA	False	NA	NA	NA	55566960	55566783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_55566800_55567000
PB_novel_11403_0	chr13	+	175	1	Intergenic	novelGene_1976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAATAATT	NA	False	NA	NA	False	NA	NA	NA	55572014	55572189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55572000_55572200
PB_novel_11405_0	chr13	+	176	1	Intergenic	novelGene_1977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAACAAATAAAAT	3345	False	NA	NA	False	NA	NA	NA	55638364	55638540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55638400_55638500
PB_novel_11409_0	chr13	+	176	1	Intergenic	novelGene_1978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAACAAAATAAAAGT	1791	False	NA	NA	False	NA	NA	NA	55716558	55716734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55716600_55716700
PB_novel_11411_0	chr13	-	173	1	Intergenic	novelGene_1979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAGTAACC	NA	False	NA	NA	False	NA	NA	NA	55745711	55745538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_55745500_55745700
PB_novel_11416_0	chr13	+	161	1	Intergenic	novelGene_1980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATCAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	55804998	55805159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55805000_55805200
PB_novel_11418_0	chr13	+	176	1	Intergenic	novelGene_1981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55818815	55818991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55818800_55819000
PB_novel_11424_0	chr13	+	157	1	Intergenic	novelGene_1982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGCAAACAAG	NA	False	NA	NA	False	NA	NA	NA	55859414	55859571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55859400_55859600
PB_novel_11425_0	chr13	+	1346	1	NIC	ENSMUSG00000021497.11	novel	1527	5	NA	NA	45	-5086	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55862507	55863853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_+_55862500_55863900
PB_novel_11432_1	chr13	+	172	1	Intergenic	novelGene_1983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1330	False	NA	NA	False	NA	NA	NA	55906629	55906801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55906600_55906800
PB_novel_11434_0	chr13	+	176	2	Intergenic	novelGene_1984	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAACCTTTTGAA	1330	False	NA	NA	False	NA	NA	NA	55906629	55921999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55906686_55921879
PB_novel_11434_1	chr13	+	177	1	Intergenic	novelGene_1985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACCTTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	55921823	55922000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_55921800_55922000
PB_novel_11438_0	chr13	+	178	1	Intergenic	novelGene_1986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTCCA	NA	False	NA	NA	False	NA	NA	NA	56207898	56208076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_56207900_56208100
PB_novel_11442_0	chr13	+	154	1	Intergenic	novelGene_1987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAGAAACAAACAAA	2547	False	NA	NA	False	NA	NA	NA	56508450	56508604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_56508400_56508600
PB_novel_11452_0	chr13	+	182	1	Intergenic	novelGene_1988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAATAAATGA	NA	False	NA	NA	False	NA	NA	NA	57528610	57528792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_57528600_57528800
PB_novel_11459_0	chr13	-	179	1	Intergenic	novelGene_1989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGTTTTCAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	58302456	58302277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_58302300_58302500
PB_novel_11463_0	chr13	+	176	1	Intergenic	novelGene_1990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATCAC	NA	False	NA	NA	False	NA	NA	NA	58359182	58359358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_58359200_58359400
PB_novel_11466_0	chr13	-	177	1	Intergenic	novelGene_1991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	477	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAACCTTTG	NA	False	NA	NA	False	NA	NA	NA	58415676	58415499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_58415500_58415700
PB_novel_11469_0	chr13	-	174	1	Intergenic	novelGene_1992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAATAAAATAAAATT	NA	False	NA	NA	False	NA	NA	NA	58515240	58515066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_58515100_58515200
PB_novel_11474_0	chr13	+	175	1	Intergenic	novelGene_1993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	58594139	58594314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_58594100_58594300
PB_novel_11477_0	chr13	-	158	1	Intergenic	novelGene_1994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATACATAAATAAATCTTAA	NA	False	NA	NA	False	NA	NA	NA	58674902	58674744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_58674700_58674900
PB_novel_11478_0	chr13	-	175	1	Intergenic	novelGene_1995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58681408	58681233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_58681200_58681400
PB_novel_11481_0	chr13	+	148	1	Intergenic	novelGene_1996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTACAAAGGAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	58720081	58720229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_58720100_58720200
PB_novel_11484_0	chr13	-	179	1	Intergenic	novelGene_1997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAGCAATAAAATTAATT	NA	False	NA	NA	False	NA	NA	NA	58794708	58794529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_58794500_58794700
PB_novel_11485_0	chr13	-	175	1	Intergenic	novelGene_1998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAGATAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	58853975	58853800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_58853800_58854000
PB_novel_11495_0	chr13	+	158	1	Intergenic	novelGene_1999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAATAAAATTT	NA	False	NA	NA	False	NA	NA	NA	59722518	59722676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_59722500_59722700
PB_novel_11506_0	chr13	-	172	1	Intergenic	novelGene_2000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59899944	59899772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_59899800_59899900
PB_novel_11508_0	chr13	+	2138	1	Antisense	novelGene_ENSMUSG00000035248.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59937241	59939379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_59937200_59939400
PB_novel_11513_0	chr13	+	640	1	FSM	ENSMUSG00000114277.2	ENSMUST00000225897.2	220	1	194	-614	194	614	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-18	NA	60789797	60790437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_60789800_60790400
PB_novel_11530_0	chr13	+	177	2	Intergenic	novelGene_2001	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTTTAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	61990385	61990744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_61990483_61990664
PB_novel_11538_0	chr13	+	174	1	Intergenic	novelGene_2003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATAAATCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	62282376	62282550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62282400_62282600
PB_novel_11550_0	chr13	-	172	1	Intergenic	novelGene_2002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	62279981	62279809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_62279800_62280000
PB_novel_11555_0	chr13	-	163	1	Intergenic	novelGene_2004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAAAACTGGATA	NA	False	NA	NA	False	NA	NA	NA	62334875	62334712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_62334700_62334900
PB_novel_11556_0	chr13	+	175	1	Intergenic	novelGene_2005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAAATGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	62338210	62338385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62338200_62338400
PB_novel_11573_0	chr13	-	176	1	Intergenic	novelGene_2006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62524605	62524429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_62524400_62524600
PB_novel_11576_0	chr13	+	176	1	Intergenic	novelGene_2007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	62562120	62562296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62562100_62562300
PB_novel_11583_0	chr13	+	174	1	Intergenic	novelGene_2008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	62637759	62637933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62637800_62637900
PB_novel_11585_1	chr13	+	175	1	Intergenic	novelGene_2009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	62647226	62647401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62647200_62647400
PB_novel_11587_0	chr13	+	178	1	Intergenic	novelGene_2010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	62656625	62656803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62656600_62656800
PB_novel_11590_0	chr13	+	167	2	Antisense	novelGene_ENSMUSG00002076935.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTTAAAAGAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	62661184	62764760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_62661281_62764689
PB_novel_11594_0	chr13	+	164	1	Intergenic	novelGene_2011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGAATTTAGT	NA	False	NA	NA	False	NA	NA	NA	62708848	62709012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62708800_62709000
PB_novel_11596_0	chr13	+	171	1	Intergenic	novelGene_2012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	62723343	62723514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62723300_62723500
PB_novel_11598_0	chr13	+	177	1	Intergenic	novelGene_2013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAAATAAACAAGACA	NA	False	NA	NA	False	NA	NA	NA	62759576	62759753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62759600_62759800
PB_novel_11599_2	chr13	+	170	1	Intergenic	novelGene_2014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAGAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	62764593	62764763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62764600_62764800
PB_novel_11603_0	chr13	+	260	1	Intergenic	novelGene_2015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTAAAAAAAAAAATCAAT	NA	False	NA	NA	False	AATAAA	-6	NA	62823972	62824232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62824000_62824200
PB_novel_11604_0	chr13	+	178	1	Antisense	novelGene_ENSMUSG00000113601.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62829776	62829954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_62829800_62830000
PB_novel_11608_1	chr13	+	171	1	Intergenic	novelGene_2017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62944833	62945004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62944800_62945000
PB_novel_11614_0	chr13	+	387	1	Intergenic	novelGene_2016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	62906110	62906497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62906100_62906500
PB_novel_11624_0	chr13	+	176	1	Intergenic	novelGene_2018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAATCAGACACA	NA	False	NA	NA	False	NA	NA	NA	62987509	62987685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_62987500_62987700
PB_novel_11629_0	chr13	-	174	1	Intergenic	novelGene_2019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	63385097	63384923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_63384900_63385100
PB_novel_11630_0	chr13	+	4060	1	FSM	ENSMUSG00000113326.2	ENSMUST00000220806.2	2028	1	-2034	2	-2034	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63390000	63394060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_63390000_63394100
PB_novel_11631_0	chr13	+	3586	1	Intergenic	novelGene_2020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63436882	63440468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_63436900_63440500
PB_novel_11635_0	chr13	-	171	1	Intergenic	novelGene_2021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGTAATAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	63516918	63516747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_63516700_63516900
PB_novel_11642_0	chr13	+	168	1	Intergenic	novelGene_2022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTTAAAAATGCC	NA	False	NA	NA	False	NA	NA	NA	63763055	63763223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_63763100_63763200
PB_novel_11654_0	chr13	-	178	1	Intergenic	novelGene_2023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAATAGATGAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	64234743	64234565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_64234600_64234700
PB_novel_11661_0	chr13	-	4455	1	Genic_Genomic	ENSMUSG00000044934.14	novel	NA	NA	NA	NA	-690	-5982	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGCAAAAAAAAAAAAA	8348	False	NA	NA	False	AATAAA	-8	NA	64298718	64294263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_64294300_64298700
PB_novel_11669_0	chr13	+	174	1	Antisense	novelGene_ENSMUSG00000021482.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	5935	False	NA	NA	False	NA	NA	NA	64438706	64438880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_64438700_64438900
PB_novel_11670_0	chr13	+	167	1	Intergenic	novelGene_2024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATCTTTAAAAAAACAAA	8606	False	NA	NA	False	NA	NA	NA	64441377	64441544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_64441400_64441500
PB_novel_11672_0	chr13	-	178	1	Antisense	novelGene_ENSMUSG00000113816.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTGCAACAAG	NA	False	NA	NA	False	NA	NA	NA	64444770	64444592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_-_64444600_64444800
PB_novel_11677_0	chr13	-	175	1	Intergenic	novelGene_2025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	64471586	64471411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_64471400_64471600
PB_novel_11679_0	chr13	-	178	1	Intergenic	novelGene_2026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGAACTT	NA	False	NA	NA	False	NA	NA	NA	64476447	64476269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_64476300_64476400
PB_novel_11685_0	chr13	-	175	1	Intergenic	novelGene_2027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	64541839	64541664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_64541700_64541800
PB_novel_11687_0	chr13	-	144	1	Intergenic	novelGene_2028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	538	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAATAAATAAATCTTT	3501	False	NA	NA	False	NA	NA	NA	64621293	64621149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_64621100_64621300
PB_novel_11689_0	chr13	-	157	1	Intergenic	novelGene_2029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	64724780	64724623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_64724600_64724800
PB_novel_11692_0	chr13	+	173	1	Intergenic	novelGene_2030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAACTGCCATG	NA	False	NA	NA	False	NA	NA	NA	65179358	65179531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_65179400_65179500
PB_novel_11698_0	chr13	-	168	1	Intergenic	novelGene_2031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	65310408	65310240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_65310200_65310400
PB_novel_11700_0	chr13	+	176	1	Intergenic	novelGene_2032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGCAT	NA	False	NA	NA	False	NA	NA	NA	65352221	65352397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_65352200_65352400
PB_novel_11703_0	chr13	-	176	1	Intergenic	novelGene_2033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	65418834	65418658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_65418700_65418800
PB_novel_11707_0	chr13	+	4211	1	Intergenic	novelGene_2034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAGCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65457199	65461410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_65457200_65461400
PB_novel_11720_0	chr13	+	176	1	Intergenic	novelGene_2035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATATATATTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	65588877	65589053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_65588900_65589100
PB_novel_11725_0	chr13	-	4036	2	Intergenic	novelGene_2036	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	224	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65632670	65628433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_65628768_65628968
PB_novel_11729_27	chr13	+	2348	1	Genic_Genomic	ENSMUSG00000113008.2	novel	NA	NA	NA	NA	-647	909	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTCTCAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	65661353	65663701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_65661400_65663700
PB_novel_11734_0	chr13	-	2938	1	Intergenic	novelGene_2037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAGAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	65680382	65677444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_65677400_65680400
PB_novel_11745_0	chr13	+	170	1	Intergenic	novelGene_2038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGTAGA	NA	False	NA	NA	False	NA	NA	NA	65784970	65785140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_65785000_65785100
PB_novel_11757_0	chr13	+	182	1	Intergenic	novelGene_2039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATGTTAAATATAAA	NA	False	NA	NA	False	NA	NA	NA	65883517	65883699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_65883500_65883700
PB_novel_11765_0	chr13	-	173	1	Intergenic	novelGene_2040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	66007683	66007510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_66007500_66007700
PB_novel_11782_0	chr13	+	1280	1	Intergenic	novelGene_2041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-6	NA	66158559	66159839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_66158600_66159800
PB_novel_11791_0	chr13	+	188	1	Intergenic	novelGene_2042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAAAACATTAAGATAT	NA	False	NA	NA	False	NA	NA	NA	66349109	66349297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_66349100_66349300
PB_novel_11802_20	chr13	+	2864	2	Intergenic	novelGene_2043	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	71	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66607506	66610571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_66610037_66610237
PB_novel_11808_8	chr13	-	4047	2	NNC	ENSMUSG00000114839.2	novel	1153	3	NA	NA	-3581	-2276	at_least_one_novel_splicesite	FALSE	canonical	3	202	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66892958	66888710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr13_-_66889043_66889243
PB_novel_11824_8	chr13	-	3892	2	Genic_Genomic	ENSMUSG00000114434.2	novel	1508	1	NA	NA	-3862	-1277	multi-exon	FALSE	canonical	3	20	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGG	NA	False	NA	NA	False	NA	NA	NA	66703146	66699053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_-_66700522_66700722
PB_novel_11827_0	chr13	-	180	1	Intergenic	novelGene_2044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66728363	66728183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_66728200_66728400
PB_novel_11848_0	chr13	-	209	1	Intergenic	novelGene_2045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66885784	66885575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_66885600_66885800
PB_novel_11869_0	chr13	-	175	1	Intergenic	novelGene_2046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGTAAAAAAAAAA	8064	False	NA	NA	False	NA	NA	NA	67100513	67100338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_67100300_67100500
PB_novel_11870_0	chr13	+	175	1	Intergenic	novelGene_2047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATTAAAAAAAAAAAAGAG	9273	False	NA	NA	False	NA	NA	NA	67137508	67137683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_67137500_67137700
PB_novel_11872_0	chr13	-	172	1	Intergenic	novelGene_2048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAACAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	67209941	67209769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_67209800_67209900
PB_novel_11882_0	chr13	+	177	1	Intergenic	novelGene_2049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	67377046	67377223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_67377000_67377200
PB_novel_11887_0	chr13	+	158	1	Intergenic	novelGene_2050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAATAAATAAATCTTA	NA	False	NA	NA	False	NA	NA	NA	67550693	67550851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_67550700_67550900
PB_novel_11897_0	chr13	-	183	1	Intergenic	novelGene_2051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAACAAAACACAA	NA	False	NA	NA	False	NA	NA	NA	67804453	67804270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_67804300_67804500
PB_novel_11905_0	chr13	+	181	1	Intergenic	novelGene_2052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTAAAAAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	67993710	67993891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_67993700_67993900
PB_novel_11917_0	chr13	+	162	1	Intergenic	novelGene_2053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAATAAATAAATCT	631	False	NA	NA	False	NA	NA	NA	69612901	69613063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_69612900_69613100
PB_novel_11922_0	chr13	+	176	1	Intergenic	novelGene_2054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAGACATTTACAATA	6711	False	NA	NA	False	NA	NA	NA	69809108	69809284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_69809100_69809300
PB_novel_11929_0	chr13	-	177	1	Intergenic	novelGene_2055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	297	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70842892	70842715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_70842700_70842900
PB_novel_11932_0	chr13	-	177	1	Intergenic	novelGene_2056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGATATACATTC	NA	False	NA	NA	False	NA	NA	NA	72935624	72935447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_72935400_72935600
PB_novel_11938_0	chr13	-	160	1	Intergenic	novelGene_2057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	73604935	73604775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_73604800_73604900
PB_novel_11944_0	chr13	+	176	1	Intergenic	novelGene_2058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAAATAATGTGATT	NA	False	NA	NA	False	NA	NA	NA	73748575	73748751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_73748600_73748800
PB_novel_11948_1	chr13	+	177	1	Intergenic	novelGene_2059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAAAGAGTTC	NA	False	NA	NA	False	NA	NA	NA	73863632	73863809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_73863600_73863800
PB_novel_11951_0	chr13	+	164	1	Intergenic	novelGene_2060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAATATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73908904	73909068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_73908900_73909100
PB_novel_11955_0	chr13	-	3654	1	Intergenic	novelGene_2061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACCCAAAAAAAAAAAAAA	4815	False	NA	NA	False	NA	NA	NA	74057473	74053819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_74053800_74057500
PB_novel_11956_0	chr13	-	176	1	Intergenic	novelGene_2062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	74208755	74208579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_74208600_74208800
PB_novel_11966_0	chr13	-	175	1	Intergenic	novelGene_2063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	74675085	74674910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_74674900_74675100
PB_novel_11976_0	chr13	+	4263	2	Antisense	novelGene_ENSMUSG00000113019.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74664293	74668829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_74664591_74664863
PB_novel_11981_0	chr13	+	173	1	Intergenic	novelGene_2064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	74709767	74709940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_74709800_74709900
PB_novel_11992_0	chr13	+	175	1	Intergenic	novelGene_2065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATTGC	NA	False	NA	NA	False	NA	NA	NA	74942941	74943116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_74942900_74943100
PB_novel_11994_0	chr13	-	179	1	Intergenic	novelGene_2066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAGACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75003348	75003169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_75003200_75003300
PB_novel_11996_0	chr13	-	174	1	Intergenic	novelGene_2067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGACAAG	NA	False	NA	NA	False	NA	NA	NA	75075908	75075734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_75075700_75075900
PB_novel_11997_0	chr13	+	175	1	Intergenic	novelGene_2068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75508674	75508849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_75508700_75508800
PB_novel_12005_0	chr13	-	180	1	Intergenic	novelGene_2069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76023675	76023495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_76023500_76023700
PB_novel_12010_0	chr13	+	179	1	Intergenic	novelGene_2070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	76377349	76377528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_76377300_76377500
PB_novel_12011_0	chr13	+	158	1	Intergenic	novelGene_2071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTAATTAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76640976	76641134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_76641000_76641100
PB_novel_12014_0	chr13	-	175	1	Intergenic	novelGene_2072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAATAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	77262501	77262326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_77262300_77262500
PB_novel_12036_0	chr13	+	4711	1	Intergenic	novelGene_2073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	585	False	NA	NA	False	NA	NA	NA	81784759	81789470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_81784800_81789500
PB_novel_12037_0	chr13	-	175	1	Intergenic	novelGene_2074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAACCCTAAAA	NA	False	NA	NA	False	NA	NA	NA	81836495	81836320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_81836300_81836500
PB_novel_12039_0	chr13	+	176	1	Intergenic	novelGene_2075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	81843288	81843464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_81843300_81843500
PB_novel_12042_0	chr13	+	174	1	Intergenic	novelGene_2076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAACTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	81895259	81895433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_81895300_81895400
PB_novel_12045_0	chr13	-	175	1	Intergenic	novelGene_2077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGGCAATTA	NA	False	NA	NA	False	NA	NA	NA	82088421	82088246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_82088200_82088400
PB_novel_12046_0	chr13	-	176	1	Intergenic	novelGene_2078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAATAAAATAAAATAACA	NA	False	NA	NA	False	NA	NA	NA	82545278	82545102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_82545100_82545300
PB_novel_12047_0	chr13	+	177	1	Intergenic	novelGene_2079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83064776	83064953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_83064800_83065000
PB_novel_12054_0	chr13	+	4084	1	Intergenic	novelGene_2080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84452420	84456504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_84452400_84456500
PB_novel_12062_0	chr13	-	178	1	Intergenic	novelGene_2081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATTATTCAAT	NA	False	NA	NA	False	NA	NA	NA	86266106	86265928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_86265900_86266100
PB_novel_12072_0	chr13	+	168	1	Intergenic	novelGene_2082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAATCTTAAGC	NA	False	NA	NA	False	NA	NA	NA	90349351	90349519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_90349400_90349500
PB_novel_12075_0	chr13	-	248	1	Intergenic	novelGene_2083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90890026	90889778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_90889800_90890000
PB_novel_12076_0	chr13	+	168	1	Intergenic	novelGene_2084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	90954727	90954895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_90954700_90954900
PB_novel_12079_0	chr13	+	167	1	Intergenic	novelGene_2085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATCTTATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91005603	91005770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_91005600_91005800
PB_novel_12083_0	chr13	+	176	1	Intergenic	novelGene_2086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAATAATGTACTTC	NA	False	NA	NA	False	NA	NA	NA	91348893	91349069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_91348900_91349100
PB_novel_12084_0	chr13	+	111	1	Intergenic	novelGene_2087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTTGA	NA	False	NA	NA	False	AATAAA	-9	NA	91366247	91366358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_91366200_91366400
PB_novel_12085_0	chr13	+	179	1	Intergenic	novelGene_2088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAATGTAGA	NA	False	NA	NA	False	NA	NA	NA	91400337	91400516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_91400300_91400500
PB_novel_12095_0	chr13	+	195	1	Intergenic	novelGene_2089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	6855	False	NA	NA	False	NA	NA	NA	92618028	92618223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_92618000_92618200
PB_novel_12099_0	chr13	+	175	1	Intergenic	novelGene_2090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	5601	False	NA	NA	False	NA	NA	NA	92780625	92780800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_92780600_92780800
PB_novel_12102_0	chr13	+	174	1	Intergenic	novelGene_2091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92953524	92953698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_92953500_92953700
PB_novel_12107_0	chr13	+	174	1	Intergenic	novelGene_2092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	93402847	93403021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_93402800_93403000
PB_novel_12111_0	chr13	-	5315	1	NIC	ENSMUSG00000021690.11	novel	8776	11	NA	NA	-20	-30866	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCAAAAAAAAAAAAAAAAT	1538	False	NA	NA	False	NA	NA	NA	93636265	93630950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_93631000_93636300
PB_novel_12117_0	chr13	+	177	1	Intergenic	novelGene_2093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATCAGTATTATA	NA	False	NA	NA	False	NA	NA	NA	93766578	93766755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_93766600_93766800
PB_novel_12123_0	chr13	-	2032	1	Intergenic	novelGene_2094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAGACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94301390	94299358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_94299400_94301400
PB_novel_12127_0	chr13	+	185	1	Intergenic	novelGene_2095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAGGTAAATTTC	NA	False	NA	NA	False	NA	NA	NA	94440459	94440644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_94440500_94440600
PB_novel_12134_0	chr13	-	237	1	Intergenic	novelGene_2096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94556104	94555867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_94555900_94556100
PB_novel_12137_0	chr13	+	4038	1	Intergenic	novelGene_2097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94601940	94605978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_94601900_94606000
PB_novel_12138_0	chr13	-	3486	1	Intergenic	novelGene_2098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94637951	94634465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_94634500_94638000
PB_novel_12150_0	chr13	+	157	1	Intergenic	novelGene_2099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAAGAAACACAC	NA	False	NA	NA	False	NA	NA	NA	95485598	95485755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_95485600_95485800
PB_novel_12152_0	chr13	+	178	1	Intergenic	novelGene_2100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	237	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAAACAGAATT	NA	False	NA	NA	False	NA	NA	NA	95665200	95665378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_95665200_95665400
PB_novel_12157_0	chr13	+	1115	1	Intergenic	novelGene_2101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	7931	False	NA	NA	False	NA	NA	NA	96019450	96020565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_96019400_96020600
PB_novel_12158_0	chr13	-	139	1	Intergenic	novelGene_2102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAAAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	96030868	96030729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_96030700_96030900
PB_novel_12160_0	chr13	-	176	1	Intergenic	novelGene_2103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	96184747	96184571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_96184600_96184700
PB_novel_12164_0	chr13	-	175	1	Intergenic	novelGene_2104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	493	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGG	NA	False	NA	NA	False	NA	NA	NA	96598220	96598045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_96598000_96598200
PB_novel_12166_0	chr13	-	178	1	Intergenic	novelGene_2105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGTCAGAAGC	NA	False	NA	NA	False	NA	NA	NA	96697844	96697666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_96697700_96697800
PB_novel_12171_0	chr13	+	167	1	Intergenic	novelGene_2106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	96824182	96824349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_96824200_96824300
PB_novel_12176_0	chr13	-	182	1	Intergenic	novelGene_2107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTGGATGAAGTA	NA	False	NA	NA	False	NA	NA	NA	96901433	96901251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_96901300_96901400
PB_novel_12181_0	chr13	-	177	1	Intergenic	novelGene_2108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTG	5386	False	NA	NA	False	NA	NA	NA	97132546	97132369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_97132400_97132500
PB_novel_12184_0	chr13	+	174	1	Intergenic	novelGene_2109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	2019	False	NA	NA	False	NA	NA	NA	97140009	97140183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_97140000_97140200
PB_novel_12191_0	chr13	+	169	1	Intergenic	novelGene_2110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97210864	97211033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_97210900_97211000
PB_novel_12195_1	chr13	-	178	2	Antisense	novelGene_ENSMUSG00000021666.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1032	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	97296457	97237189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_-_97237317_97296406
PB_novel_12200_0	chr13	+	174	1	Intergenic	novelGene_2111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	97287759	97287933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_97287800_97287900
PB_novel_12203_0	chr13	-	176	1	Intergenic	novelGene_2112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATATTTTTTTTTAAAA	NA	False	NA	-11	True	NA	NA	NA	97298429	97298253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_97298300_97298400
PB_novel_12208_0	chr13	+	177	1	Intergenic	novelGene_2113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACCCAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	97345833	97346010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_97345800_97346000
PB_novel_12212_0	chr13	+	174	1	Intergenic	novelGene_2114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	97367749	97367923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_97367700_97367900
PB_novel_12213_0	chr13	-	174	1	Intergenic	novelGene_2115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97369548	97369374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_97369400_97369500
PB_novel_12219_0	chr13	+	165	1	Intergenic	novelGene_2116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	97526557	97526722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_97526600_97526700
PB_novel_12222_0	chr13	-	181	1	Intergenic	novelGene_2117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAACAAAAAGAATTA	3931	False	NA	NA	False	NA	NA	NA	97584168	97583987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_97584000_97584200
PB_novel_12227_0	chr13	-	176	1	Intergenic	novelGene_2118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	716	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	97661368	97661192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_97661200_97661400
PB_novel_12231_0	chr13	-	179	1	Intergenic	novelGene_2119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAGAGAATAAGA	7299	False	NA	NA	False	NA	NA	NA	97753333	97753154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_97753200_97753300
PB_novel_12246_0	chr13	+	177	1	Genic_Genomic	ENSMUSG00000114458.2	novel	NA	NA	NA	NA	-11	-2399	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAAGAGACCA	NA	False	NA	NA	False	NA	NA	NA	98937668	98937845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_98937700_98937800
PB_novel_12248_0	chr13	+	296	1	Genic_Genomic	ENSMUSG00000114458.2	novel	NA	NA	NA	NA	2389	120	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATATTACAACACTAG	NA	False	NA	NA	False	NA	NA	NA	98940068	98940364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr13_+_98940100_98940400
PB_novel_12250_0	chr13	+	3689	1	Intergenic	novelGene_2120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACCAAAAACCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98944800	98948489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_98944800_98948500
PB_novel_12252_0	chr13	+	171	1	Intergenic	novelGene_2121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98964483	98964654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_98964500_98964700
PB_novel_12256_0	chr13	+	3462	1	Antisense	novelGene_ENSMUSG00000009470.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACTAAAAAAAAAAAAAAA	2181	False	NA	NA	False	AAGAAA	-12	NA	98979850	98983312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_98979800_98983300
PB_novel_12259_0	chr13	+	3555	1	Intergenic	novelGene_2122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	99042327	99045882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_99042300_99045900
PB_novel_12266_0	chr13	+	171	1	Intergenic	novelGene_2123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAATAAAATAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	99149882	99150053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_99149900_99150100
PB_novel_12277_0	chr13	+	1871	1	Antisense	novelGene_ENSMUSG00000052727.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCTAAAAAAAAAAAAAAAA	8106	False	NA	NA	False	AAAAAG	-25	NA	99559048	99560919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_99559000_99560900
PB_novel_12283_0	chr13	+	213	1	Intergenic	novelGene_2124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAGTACTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99967181	99967394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_99967200_99967400
PB_novel_12288_0	chr13	+	176	1	Intergenic	novelGene_2125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	100556847	100557023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_100556800_100557000
PB_novel_12295_0	chr13	-	178	1	Intergenic	novelGene_2126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATAATTGATGT	NA	False	NA	NA	False	NA	NA	NA	100701442	100701264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_100701300_100701400
PB_novel_12301_0	chr13	+	175	1	Intergenic	novelGene_2127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	100785466	100785641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_100785500_100785600
PB_novel_12302_0	chr13	+	179	1	Intergenic	novelGene_2128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACTCAACGAT	NA	False	NA	NA	False	NA	NA	NA	100786499	100786678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_100786500_100786700
PB_novel_12305_0	chr13	-	178	1	Intergenic	novelGene_2130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAAATTCCAG	NA	False	NA	NA	False	NA	NA	NA	100849760	100849582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_100849600_100849800
PB_novel_12307_0	chr13	-	174	1	Intergenic	novelGene_2129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAAAACTAACAA	NA	False	NA	NA	False	NA	NA	NA	100844099	100843925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_100843900_100844100
PB_novel_12311_0	chr13	+	176	1	Intergenic	novelGene_2131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	757	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	100868425	100868601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_100868400_100868600
PB_novel_12312_0	chr13	+	165	1	Intergenic	novelGene_2132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	100869481	100869646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_100869500_100869600
PB_novel_12313_0	chr13	+	178	1	Intergenic	novelGene_2133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATTATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100870502	100870680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_100870500_100870700
PB_novel_12322_0	chr13	+	176	1	Intergenic	novelGene_2134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	100948934	100949110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_100948900_100949100
PB_novel_12326_0	chr13	-	174	1	Intergenic	novelGene_2135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAACTCTAACT	NA	False	NA	NA	False	NA	NA	NA	101023038	101022864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_101022900_101023000
PB_novel_12328_0	chr13	-	176	1	Intergenic	novelGene_2136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGTGAAATCC	NA	False	NA	NA	False	NA	NA	NA	101128605	101128429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_101128400_101128600
PB_novel_12329_0	chr13	-	175	1	Intergenic	novelGene_2137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAGAATTAAT	NA	False	NA	NA	False	NA	NA	NA	101293903	101293728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_101293700_101293900
PB_novel_12339_0	chr13	+	170	1	Intergenic	novelGene_2138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAACAAAAAACGGGA	NA	False	NA	NA	False	NA	NA	NA	102924255	102924425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_102924300_102924400
PB_novel_12341_0	chr13	+	174	1	Intergenic	novelGene_2139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	103172694	103172868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_103172700_103172900
PB_novel_12345_0	chr13	-	2324	1	NIC	ENSMUSG00000032621.9	novel	6330	10	NA	NA	1035	2162	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103889137	103886813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_103886800_103889100
PB_novel_12347_0	chr13	+	160	1	Intergenic	novelGene_2140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	104121237	104121397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_104121200_104121400
PB_novel_12354_0	chr13	-	176	1	Intergenic	novelGene_2141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	104334185	104334009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_104334000_104334200
PB_novel_12357_0	chr13	-	176	1	Intergenic	novelGene_2142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	104416939	104416763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_104416800_104416900
PB_novel_12362_0	chr13	+	176	1	Intergenic	novelGene_2143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTTAAAAAAAGAGAAA	3946	False	NA	NA	False	NA	NA	NA	104676385	104676561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_104676400_104676600
PB_novel_12364_0	chr13	-	181	1	Intergenic	novelGene_2144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAGAAAAAAAGTGAG	NA	False	NA	NA	False	NA	NA	NA	104743401	104743220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_104743200_104743400
PB_novel_12367_0	chr13	+	165	1	Intergenic	novelGene_2145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105037978	105038143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_105038000_105038100
PB_novel_12373_0	chr13	+	175	1	Intergenic	novelGene_2146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAGAAAAAAGAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	106985931	106986106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_106985900_106986100
PB_novel_12374_2	chr13	+	176	1	Intergenic	novelGene_2147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAACAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107021222	107021398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_107021200_107021400
PB_novel_12375_0	chr13	+	177	1	Intergenic	novelGene_2149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAAAAAACTGTT	NA	False	NA	NA	False	NA	NA	NA	107087484	107087661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_107087500_107087700
PB_novel_12379_0	chr13	+	5203	1	Intergenic	novelGene_2148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107047943	107053146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_107047900_107053100
PB_novel_12386_0	chr13	-	179	1	Intergenic	novelGene_2150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	107104173	107103994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_107104000_107104200
PB_novel_12387_0	chr13	-	173	1	Intergenic	novelGene_2151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATACTAACATC	NA	False	NA	NA	False	NA	NA	NA	107104664	107104491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_107104500_107104700
PB_novel_12390_0	chr13	+	182	1	Intergenic	novelGene_2152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	107120701	107120883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_107120700_107120900
PB_novel_12397_0	chr13	+	169	1	Intergenic	novelGene_2153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	107408148	107408317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_107408100_107408300
PB_novel_12398_0	chr13	-	172	1	Intergenic	novelGene_2154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAGTAAATA	NA	False	NA	NA	False	NA	NA	NA	107666307	107666135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_107666100_107666300
PB_novel_12430_1	chr13	-	176	1	Intergenic	novelGene_2155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATATATAAACTG	NA	False	NA	NA	False	NA	NA	NA	109794888	109794712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_109794700_109794900
PB_novel_12440_0	chr13	-	1560	1	Antisense	novelGene_ENSMUSG00000021701.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7390	False	NA	NA	False	NA	NA	NA	110538062	110536502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_-_110536500_110538100
PB_novel_12441_0	chr13	+	179	1	Intergenic	novelGene_2156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	110666457	110666636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_110666500_110666600
PB_novel_12444_0	chr13	+	172	1	Intergenic	novelGene_2157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAATCAAATATTTAAA	NA	False	NA	NA	False	NA	NA	NA	111533202	111533374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_111533200_111533400
PB_novel_12458_0	chr13	+	177	1	Intergenic	novelGene_2158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	111731959	111732136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_111732000_111732100
PB_novel_12473_0	chr13	-	176	1	Intergenic	novelGene_2159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGATAAAGAT	9704	False	NA	NA	False	NA	NA	NA	112592105	112591929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_112591900_112592100
PB_novel_12478_0	chr13	-	981	1	Antisense	novelGene_ENSMUSG00000047789.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGGAAAAAAAACAAAACAA	4256	False	NA	NA	False	NA	NA	NA	112869872	112868891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_-_112868900_112869900
PB_novel_12488_0	chr13	+	2993	1	Antisense	novelGene_ENSMUSG00000016018.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAACAAAAA	1848	False	NA	NA	False	NA	NA	NA	113050243	113053236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_+_113050200_113053200
PB_novel_12491_0	chr13	-	440	1	Intergenic	novelGene_2160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGACAAAAAAAAAAAAA	8075	False	NA	NA	False	NA	NA	NA	113088235	113087795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_113087800_113088200
PB_novel_12496_0	chr13	-	176	1	NIC	ENSMUSG00000116741.2	novel	562	2	NA	NA	81	-517	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	113287903	113287727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr13_-_113287700_113287900
PB_novel_12509_0	chr13	-	175	1	Intergenic	novelGene_2161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAAGCAAGCT	NA	False	NA	NA	False	NA	NA	NA	113926696	113926521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_113926500_113926700
PB_novel_12510_3	chr13	-	1288	1	Antisense	novelGene_ENSMUSG00000042348.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAATGTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114293157	114291869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_-_114291900_114293200
PB_novel_12512_0	chr13	+	4057	1	Intergenic	novelGene_2162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCAAAAAAAAAAAAAAGAAG	7719	False	NA	NA	False	ATTAAA	-26	NA	113989207	113993264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_113989200_113993300
PB_novel_12517_0	chr13	-	6648	1	Intergenic	novelGene_2163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAGAAGAAGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	114124682	114118034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_114118000_114124700
PB_novel_12519_0	chr13	-	1415	1	Intergenic	novelGene_2164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-25	NA	114127703	114126288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_114126300_114127700
PB_novel_12520_0	chr13	+	177	1	Intergenic	novelGene_2165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	291	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114135902	114136079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_114135900_114136100
PB_novel_12524_0	chr13	-	768	1	Intergenic	novelGene_2166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114208075	114207307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_114207300_114208100
PB_novel_12529_0	chr13	-	4364	1	FSM	ENSMUSG00000114696.2	ENSMUST00000223997.2	1976	1	-355	-2033	-355	2033	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCTAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	114257307	114252943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_-_114252900_114257300
PB_novel_12534_0	chr13	-	173	1	Intergenic	novelGene_2167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	6924	False	NA	NA	False	NA	NA	NA	114381149	114380976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_114381000_114381100
PB_novel_12546_0	chr13	-	175	1	Intergenic	novelGene_2168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	115183231	115183056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_115183100_115183200
PB_novel_12552_0	chr13	+	152	1	Intergenic	novelGene_2169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACAATTCTAGC	NA	False	NA	NA	False	NA	NA	NA	117314146	117314298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_117314100_117314300
PB_novel_12553_1	chr13	-	175	1	Intergenic	novelGene_2172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACTAC	NA	False	NA	NA	False	NA	NA	NA	117384777	117384602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_117384600_117384800
PB_novel_12555_0	chr13	-	174	1	Intergenic	novelGene_2170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAGAAAGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	117359796	117359622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_117359600_117359800
PB_novel_12556_0	chr13	+	175	1	Intergenic	novelGene_2171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAACATATGTTAA	NA	False	NA	NA	False	NA	NA	NA	117370692	117370867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_117370700_117370900
PB_novel_12562_0	chr13	+	169	1	Intergenic	novelGene_2173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	117846637	117846806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_117846600_117846800
PB_novel_12566_0	chr13	-	179	1	Intergenic	novelGene_2174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	118936150	118935971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_118936000_118936200
PB_novel_12567_0	chr13	-	167	1	Intergenic	novelGene_2175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATAAATCTTAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	118978091	118977924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_118977900_118978100
PB_novel_12568_0	chr13	+	177	1	Intergenic	novelGene_2176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATGAC	NA	False	NA	NA	False	NA	NA	NA	119402067	119402244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_119402100_119402200
PB_novel_12575_0	chr13	-	4513	1	Antisense	novelGene_ENSMUSG00000025451.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	3337	False	NA	NA	False	NA	NA	NA	119598185	119593672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr13_-_119593700_119598200
PB_novel_12577_0	chr13	-	176	1	Intergenic	novelGene_2177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119603382	119603206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_119603200_119603400
PB_novel_12588_0	chr13	-	169	1	Intergenic	novelGene_2178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	120219988	120219819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_120219800_120220000
PB_novel_12589_0	chr13	+	175	1	Intergenic	novelGene_2179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAGGTGAAGAGAC	NA	False	NA	NA	False	NA	NA	NA	120233729	120233904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_120233700_120233900
PB_novel_12590_0	chr13	+	188	1	Intergenic	novelGene_2180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTATTTTAAAAAGACACAAA	NA	False	NA	NA	False	NA	NA	NA	120249258	120249446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_120249300_120249400
PB_novel_12594_0	chr13	-	168	1	Intergenic	novelGene_2181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTAAAAAAAAAATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	120501301	120501133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_-_120501100_120501300
PB_novel_12602_0	chr14	+	176	2	Antisense	novelGene_ENSMUSG00000114894.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4101267	4233698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_4101305_4233559
PB_novel_12602_2	chr14	+	177	1	Intergenic	novelGene_5260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4233521	4233698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_4233500_4233700
PB_novel_12606_0	chr14	-	176	1	Intergenic	novelGene_5261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4286208	4286032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_4286000_4286200
PB_novel_12611_0	chr14	+	178	1	Intergenic	novelGene_5262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	6383760	6383938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_6383800_6383900
PB_novel_12646_0	chr14	+	3757	1	Intergenic	novelGene_5263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-23	NA	10419959	10423716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_10420000_10423700
PB_novel_12647_0	chr14	+	1961	2	Intergenic	novelGene_5264	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAACAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	10649759	10651755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_10650651_10650685
PB_novel_12650_0	chr14	+	4392	1	Intergenic	novelGene_5265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGAAAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10713293	10717685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_10713300_10717700
PB_novel_12656_0	chr14	-	239	1	Intergenic	novelGene_5266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCAATAAATAAATAAATAAA	NA	False	NA	NA	False	AAAAAG	-23	NA	10929333	10929094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_10929100_10929300
PB_novel_12662_0	chr14	-	174	1	Intergenic	novelGene_5267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAATAAGTGA	NA	False	NA	NA	False	NA	NA	NA	13262131	13261957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_13262000_13262100
PB_novel_12665_2	chr14	+	1203	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-179	-688	-179	688	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAACAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	AATAAA	-28	NA	13669258	13670461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_13669300_13670500
PB_novel_12675_0	chr14	+	175	1	Intergenic	novelGene_5268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	14295699	14295874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_14295700_14295900
PB_novel_12701_0	chr14	-	176	1	Intergenic	novelGene_5269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAAAATGCGCCA	NA	False	NA	NA	False	NA	NA	NA	18447082	18446906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_18446900_18447100
PB_novel_12706_0	chr14	-	2718	1	Intergenic	novelGene_5270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19826588	19823870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_19823900_19826600
PB_novel_12726_0	chr14	-	177	1	Intergenic	novelGene_5271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACCCT	NA	False	NA	NA	False	NA	NA	NA	20352391	20352214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_20352200_20352400
PB_novel_12729_0	chr14	-	134	1	Intergenic	novelGene_5272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20399868	20399734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_20399700_20399900
PB_novel_12732_0	chr14	-	229	1	Antisense	novelGene_ENSMUSG00000039599.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20421491	20421262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_-_20421300_20421500
PB_novel_12739_0	chr14	+	170	1	Intergenic	novelGene_5273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	20532361	20532531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_20532400_20532500
PB_novel_12740_0	chr14	+	173	1	Intergenic	novelGene_5274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	20577103	20577276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_20577100_20577300
PB_novel_12747_0	chr14	+	171	1	Intergenic	novelGene_5275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATTAAAAAATAAA	4479	False	NA	NA	False	NA	NA	NA	20687233	20687404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_20687200_20687400
PB_novel_12750_0	chr14	+	7094	1	NIC	ENSMUSG00000039367.12	novel	4461	23	NA	NA	13	-1269	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20724434	20731528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_+_20724400_20731500
PB_novel_12766_0	chr14	-	155	1	Intergenic	novelGene_5276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGAGAAGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	21246502	21246347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_21246300_21246500
PB_novel_12769_0	chr14	-	3052	1	Intergenic	novelGene_5277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAACAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-27	NA	21366595	21363543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_21363500_21366600
PB_novel_12770_0	chr14	-	179	1	Intergenic	novelGene_5278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGGAGTGCAACA	NA	False	NA	NA	False	NA	NA	NA	21394495	21394316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_21394300_21394500
PB_novel_12773_0	chr14	-	179	1	Intergenic	novelGene_5279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	21456571	21456392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_21456400_21456600
PB_novel_12774_0	chr14	-	173	1	Intergenic	novelGene_5280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAGAAAGAAACA	NA	False	NA	NA	False	NA	NA	NA	21485746	21485573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_21485600_21485700
PB_novel_12797_0	chr14	-	177	1	Intergenic	novelGene_5281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATGAAGAC	9971	False	NA	NA	False	NA	NA	NA	21838876	21838699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_21838700_21838900
PB_novel_12799_0	chr14	-	174	1	Intergenic	novelGene_5282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAAGAACAATAA	NA	False	NA	NA	False	NA	NA	NA	21869510	21869336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_21869300_21869500
PB_novel_12816_0	chr14	+	3786	1	Antisense	novelGene_ENSMUSG00000021782.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24207082	24210868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_24207100_24210900
PB_novel_12817_0	chr14	-	160	1	Intergenic	novelGene_5283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAGAAGAGGAATCAA	NA	False	NA	NA	False	NA	NA	NA	24299928	24299768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_24299800_24299900
PB_novel_12820_0	chr14	+	177	1	Intergenic	novelGene_5284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATAACTGCACA	NA	False	NA	NA	False	NA	NA	NA	24390104	24390281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_24390100_24390300
PB_novel_12821_0	chr14	+	173	1	Intergenic	novelGene_5285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAAAAAAAAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	24428854	24429027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_24428900_24429000
PB_novel_12824_0	chr14	+	134	1	Intergenic	novelGene_5286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	24537292	24537426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_24537300_24537400
PB_novel_12829_0	chr14	+	168	1	Intergenic	novelGene_5287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1653	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	3212	False	NA	NA	False	NA	NA	NA	25591724	25591892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_25591700_25591900
PB_novel_12831_0	chr14	+	180	1	Intergenic	novelGene_5288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGACCTATGTG	NA	False	NA	NA	False	NA	NA	NA	25704673	25704853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_25704700_25704900
PB_novel_12841_1	chr14	+	177	1	Intergenic	novelGene_5290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	330	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6480	False	NA	NA	False	NA	NA	NA	25849084	25849261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_25849100_25849300
PB_novel_12842_0	chr14	-	181	1	Intergenic	novelGene_5289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAAGAAA	8797	False	NA	NA	False	NA	NA	NA	25839545	25839364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_25839400_25839500
PB_novel_12847_0	chr14	+	173	1	Intergenic	novelGene_5291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAGCGAGGA	NA	False	NA	NA	False	NA	NA	NA	25913448	25913621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_25913400_25913600
PB_novel_12851_0	chr14	+	172	1	Intergenic	novelGene_5292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGACAG	NA	False	NA	NA	False	NA	NA	NA	25981629	25981801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_25981600_25981800
PB_novel_12861_0	chr14	-	146	1	Intergenic	novelGene_5293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	26316423	26316277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_26316300_26316400
PB_novel_12862_0	chr14	+	181	1	Intergenic	novelGene_5294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	26323844	26324025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_26323800_26324000
PB_novel_12863_0	chr14	-	3134	2	Antisense	novelGene_ENSMUSG00000040818.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	ACTAAA	-25	NA	26329770	26326313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_-_26329366_26329688
PB_novel_12863_1	chr14	-	1710	1	Antisense	novelGene_ENSMUSG00000040818.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	ACTAAA	-25	NA	26328023	26326313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_-_26326300_26328000
PB_novel_12864_0	chr14	+	166	1	Intergenic	novelGene_5295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTAAAAAAATTA	6082	False	NA	NA	False	NA	NA	NA	26337152	26337318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_26337200_26337300
PB_novel_12865_0	chr14	-	1709	1	Intergenic	novelGene_5296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26357612	26355903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_26355900_26357600
PB_novel_12869_0	chr14	-	176	1	Intergenic	novelGene_5297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	253	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2992	False	NA	NA	False	NA	NA	NA	26439883	26439707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_26439700_26439900
PB_novel_12870_0	chr14	+	178	1	Intergenic	novelGene_5298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAATTTAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	26579502	26579680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_26579500_26579700
PB_novel_12873_0	chr14	+	3603	1	Intergenic	novelGene_5299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAAAGAAA	1120	False	NA	NA	False	NA	NA	NA	26657613	26661216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_26657600_26661200
PB_novel_12876_0	chr14	+	168	1	Intergenic	novelGene_5300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATGAATGCTTT	4003	False	NA	NA	False	NA	NA	NA	26677183	26677351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_26677200_26677400
PB_novel_12882_0	chr14	-	382	1	Intergenic	novelGene_5301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAAAGCTTTCC	NA	False	NA	NA	False	NA	NA	NA	26717396	26717014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_26717000_26717400
PB_novel_12887_0	chr14	+	170	1	Intergenic	novelGene_5302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAGCCCAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	26735097	26735267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_26735100_26735300
PB_novel_12894_0	chr14	-	177	1	Intergenic	novelGene_5303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAATATTCCA	NA	False	NA	NA	False	NA	NA	NA	26819452	26819275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_26819300_26819500
PB_novel_12900_1	chr14	-	167	1	Intergenic	novelGene_5306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCTTAAAAAAAAAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	27028619	27028452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_27028500_27028600
PB_novel_12901_0	chr14	-	175	1	Intergenic	novelGene_5304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATGGGG	NA	False	NA	NA	False	NA	NA	NA	26929436	26929261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_26929300_26929400
PB_novel_12903_0	chr14	+	177	1	Intergenic	novelGene_5305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	27013211	27013388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_27013200_27013400
PB_novel_12905_0	chr14	+	157	1	Intergenic	novelGene_5307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATC	9236	False	NA	NA	False	NA	NA	NA	27048307	27048464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_27048300_27048500
PB_novel_12906_0	chr14	+	159	1	Intergenic	novelGene_5308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAATTAAAAAAAA	9400	False	NA	NA	False	NA	NA	NA	27076794	27076953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_27076800_27077000
PB_novel_12920_0	chr14	-	170	1	Intergenic	novelGene_5309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAATGAGAGAGAGCTTA	1505	False	NA	NA	False	NA	NA	NA	27269920	27269750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_27269800_27269900
PB_novel_12929_0	chr14	-	4655	1	Antisense	novelGene_ENSMUSG00000040640.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27755931	27751276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_-_27751300_27755900
PB_novel_12944_0	chr14	+	4110	1	Genic_Genomic	ENSMUSG00000021962.10	novel	NA	NA	NA	NA	-137	2761	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAACAAAAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	30206887	30210997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_+_30206900_30211000
PB_novel_12947_0	chr14	-	130	1	Intergenic	novelGene_5310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAACAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	30254467	30254337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_30254300_30254500
PB_novel_12951_0	chr14	+	173	1	Intergenic	novelGene_5311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30259577	30259750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_30259600_30259800
PB_novel_12953_0	chr14	-	177	1	Intergenic	novelGene_5313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30284943	30284766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_30284800_30284900
PB_novel_12959_0	chr14	+	127	1	Intergenic	novelGene_5314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	30435126	30435253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_30435100_30435300
PB_novel_12973_0	chr14	+	176	1	Intergenic	novelGene_5315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAATAT	2878	False	NA	NA	False	NA	NA	NA	30719758	30719934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_30719800_30719900
PB_novel_12983_0	chr14	-	178	1	Intergenic	novelGene_5316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATGTAATTCGTA	NA	False	NA	NA	False	NA	NA	NA	31358737	31358559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_31358600_31358700
PB_novel_12985_0	chr14	+	177	1	Intergenic	novelGene_5317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAAAAGGAAAC	NA	False	NA	NA	False	NA	NA	NA	31366057	31366234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_31366100_31366200
PB_novel_12989_0	chr14	-	4084	1	NIC	ENSMUSG00000014496.9	novel	6712	28	NA	NA	57	-49410	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5337	False	NA	NA	False	CATAAA	-25	NA	31552551	31548467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_31548500_31552600
PB_novel_12998_0	chr14	+	173	1	Intergenic	novelGene_5318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31809745	31809918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_31809700_31809900
PB_novel_12999_0	chr14	-	179	1	Intergenic	novelGene_5319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAAAGATTCTGG	NA	False	NA	NA	False	NA	NA	NA	31810506	31810327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_31810300_31810500
PB_novel_13000_0	chr14	-	173	1	Intergenic	novelGene_5320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATTTAAAAAAAAA	7083	False	NA	NA	False	NA	NA	NA	31823610	31823437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_31823400_31823600
PB_novel_13003_0	chr14	+	165	1	Intergenic	novelGene_5321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAACTTTAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	31886913	31887078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_31886900_31887100
PB_novel_13004_2	chr14	-	5974	1	Antisense	novelGene_ENSMUSG00000056234.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31900024	31894050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_-_31894000_31900000
PB_novel_13009_0	chr14	-	184	1	Intergenic	novelGene_5322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	32050451	32050267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_32050300_32050500
PB_novel_13012_0	chr14	-	1450	1	Intergenic	novelGene_5323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32052604	32051154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_32051200_32052600
PB_novel_13017_0	chr14	-	2794	1	Intergenic	novelGene_5324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32950194	32947400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_32947400_32950200
PB_novel_13022_0	chr14	+	175	1	Intergenic	novelGene_5325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	33977301	33977476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_33977300_33977500
PB_novel_13028_0	chr14	+	4803	1	Intergenic	novelGene_5326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34014262	34019065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_34014300_34019100
PB_novel_13029_0	chr14	+	176	1	Intergenic	novelGene_5327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34027340	34027516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_34027300_34027500
PB_novel_13033_0	chr14	-	169	1	Intergenic	novelGene_5328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTTTGACTA	NA	False	NA	NA	False	NA	NA	NA	34061239	34061070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_34061100_34061200
PB_novel_13038_0	chr14	-	1655	2	Antisense	novelGene_ENSMUSG00000041445.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAACCAAAAAC	5254	False	NA	NA	False	NA	NA	NA	34112516	34105565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_-_34105811_34111106
PB_novel_13039_0	chr14	-	176	1	Intergenic	novelGene_5329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	34122613	34122437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_34122400_34122600
PB_novel_13046_0	chr14	+	175	1	Intergenic	novelGene_5330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	34217038	34217213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_34217000_34217200
PB_novel_13061_0	chr14	+	198	1	Intergenic	novelGene_5331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	34420700	34420898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_34420700_34420900
PB_novel_13062_0	chr14	+	167	1	Intergenic	novelGene_5332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34439789	34439956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_34439800_34440000
PB_novel_13070_0	chr14	+	172	1	Intergenic	novelGene_5333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35786697	35786869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_35786700_35786900
PB_novel_13076_0	chr14	+	167	1	Intergenic	novelGene_5334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	36865341	36865508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_36865300_36865500
PB_novel_13078_0	chr14	+	176	1	Intergenic	novelGene_5335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	37450173	37450349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_37450200_37450300
PB_novel_13096_0	chr14	+	168	1	Intergenic	novelGene_5336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGTTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	40709506	40709674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_40709500_40709700
PB_novel_13097_0	chr14	-	168	1	Intergenic	novelGene_5337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	40715529	40715361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_40715400_40715500
PB_novel_13100_0	chr14	-	195	1	Intergenic	novelGene_5338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATATTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40851603	40851408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_40851400_40851600
PB_novel_13101_0	chr14	+	160	1	Intergenic	novelGene_5339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATTTTTAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	40888396	40888556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_40888400_40888600
PB_novel_13103_0	chr14	+	174	1	Intergenic	novelGene_5340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAAAGATGAAGT	NA	False	NA	NA	False	NA	NA	NA	41045657	41045831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_41045700_41045800
PB_novel_13114_2	chr14	+	4983	4	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4478	-45754	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_3	93.667259784599	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41761473	41780022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_41761595_41761988_41762060_41766111_41766287_41775406
PB_novel_13130_0	chr14	-	4106	1	Genic_Genomic	ENSMUSG00000090389.3	novel	NA	NA	NA	NA	-420	2151	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAATCAGAT	NA	False	NA	NA	False	AATAAA	-14	NA	42980348	42976242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_-_42976200_42980300
PB_novel_13133_0	chr14	+	3914	2	Intergenic	novelGene_5341	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	162	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAATAAATAAAA	NA	False	NA	NA	False	AATGAA	-10	NA	43169940	43174248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_43170061_43170454
PB_novel_13144_0	chr14	+	168	1	Antisense	novelGene_ENSMUSG00000115294.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAGAATAGGA	NA	False	NA	NA	False	NA	NA	NA	44429297	44429465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_44429300_44429500
PB_novel_13148_0	chr14	-	200	1	Intergenic	novelGene_5342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	5515	False	NA	NA	False	NA	NA	NA	45383289	45383089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_45383100_45383300
PB_novel_13150_0	chr14	+	182	1	Intergenic	novelGene_5343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAGAAAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	45454679	45454861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_45454700_45454900
PB_novel_13151_0	chr14	-	1854	1	Intergenic	novelGene_5344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-38	NA	45466242	45464388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_45464400_45466200
PB_novel_13156_2	chr14	-	1591	8	Antisense	novelGene_ENSMUSG00000053205.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45611608	45596218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_-_45596812_45604053_45604112_45605133_45605174_45605761_45605802_45605875_45605926_45608472_45608547_45609839_45609934_45610966
PB_novel_13157_0	chr14	-	1152	1	Antisense	novelGene_ENSMUSG00000053205.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATGAAAAAAAAAAAAAAAAA	1285	False	NA	NA	False	TTTAAA	-45	NA	45597373	45596221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_-_45596200_45597400
PB_novel_13161_0	chr14	+	173	1	Intergenic	novelGene_5345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAATAACATACAT	NA	False	NA	NA	False	NA	NA	NA	45658387	45658560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_45658400_45658600
PB_novel_13162_0	chr14	-	165	1	Intergenic	novelGene_5346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	45687682	45687517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_45687500_45687700
PB_novel_13163_0	chr14	-	177	1	Intergenic	novelGene_5347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAATACAC	NA	False	NA	NA	False	NA	NA	NA	45698003	45697826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_45697800_45698000
PB_novel_13164_0	chr14	+	2649	1	Antisense	novelGene_ENSMUSG00000037712.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45714862	45717511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_45714900_45717500
PB_novel_13170_0	chr14	-	184	1	Intergenic	novelGene_5348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45807113	45806929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_45806900_45807100
PB_novel_13179_0	chr14	-	179	1	Intergenic	novelGene_5349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAATAAATAAAAC	NA	False	NA	NA	False	NA	NA	NA	46060867	46060688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_46060700_46060900
PB_novel_13183_0	chr14	+	173	1	Intergenic	novelGene_5350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	46748108	46748281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_46748100_46748300
PB_novel_13187_0	chr14	-	1616	1	NIC	ENSMUSG00000015759.12	novel	1538	5	NA	NA	58	-10374	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47025733	47024117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr14_-_47024100_47025700
PB_novel_13189_0	chr14	+	157	1	Intergenic	novelGene_5351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	47142358	47142515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_47142400_47142500
PB_novel_13198_0	chr14	+	159	1	Intergenic	novelGene_5352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAATAAACAAAATTATAT	7949	False	NA	NA	False	NA	NA	NA	47502160	47502319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_47502200_47502300
PB_novel_13206_0	chr14	+	2458	1	Intergenic	novelGene_5353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAAACAAAACAG	NA	False	NA	NA	False	NA	NA	NA	47551872	47554330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_47551900_47554300
PB_novel_13213_0	chr14	-	172	1	Intergenic	novelGene_5354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCTATCT	NA	False	NA	NA	False	NA	NA	NA	47691532	47691360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_47691400_47691500
PB_novel_13214_0	chr14	-	175	1	Intergenic	novelGene_5355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAACTGT	NA	False	NA	NA	False	NA	NA	NA	47691907	47691732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_47691700_47691900
PB_novel_13217_0	chr14	-	4829	1	Antisense	novelGene_ENSMUSG00000037536.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAAAAG	8253	False	NA	NA	False	NA	NA	NA	47715790	47710961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_-_47711000_47715800
PB_novel_13221_0	chr14	+	756	1	Antisense	novelGene_ENSMUSG00000037526.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTCTCAGAAACCCAAAAA	NA	False	NA	NA	False	NA	NA	NA	47783240	47783996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_47783200_47784000
PB_novel_13227_0	chr14	+	176	1	Intergenic	novelGene_5356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAGACATTT	NA	False	NA	NA	False	NA	NA	NA	47812747	47812923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_47812700_47812900
PB_novel_13228_0	chr14	-	173	1	Intergenic	novelGene_5357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACTC	NA	False	NA	NA	False	NA	NA	NA	47821142	47820969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_47821000_47821100
PB_novel_13234_0	chr14	+	4845	2	NNC	ENSMUSG00000021843.18	novel	4298	40	NA	NA	1	-10093	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	47886768	47891679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr14_+_47890208_47890273
PB_novel_13240_0	chr14	+	191	1	Intergenic	novelGene_5358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	47935615	47935806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_47935600_47935800
PB_novel_13247_0	chr14	-	174	1	Intergenic	novelGene_5359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	48562832	48562658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_48562700_48562800
PB_novel_13248_0	chr14	-	176	1	Intergenic	novelGene_5360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGTTCAGT	NA	False	NA	NA	False	NA	NA	NA	48681128	48680952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_48681000_48681100
PB_novel_13253_0	chr14	-	172	1	Intergenic	novelGene_5361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAAATAAATCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	48871437	48871265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_48871300_48871400
PB_novel_13260_0	chr14	+	177	1	Intergenic	novelGene_5362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	786	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATAAGA	NA	False	NA	NA	False	NA	NA	NA	49226725	49226902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_49226700_49226900
PB_novel_13270_0	chr14	+	175	1	Intergenic	novelGene_5363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50221865	50222040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_50221900_50222000
PB_novel_13274_0	chr14	+	173	1	Intergenic	novelGene_5364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCTTAAAATAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	51028759	51028932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_51028800_51028900
PB_novel_13278_0	chr14	-	188	1	Intergenic	novelGene_5367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAATAAATAAATAAG	1188	False	NA	NA	False	NA	NA	NA	51197755	51197567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_51197600_51197800
PB_novel_13279_0	chr14	-	167	1	Intergenic	novelGene_5365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAACATAATA	8631	False	NA	NA	False	NA	NA	NA	51049050	51048883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_51048900_51049000
PB_novel_13287_0	chr14	-	172	1	Intergenic	novelGene_5366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAAAGAAAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	51161035	51160863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_51160900_51161000
PB_novel_13291_0	chr14	-	184	1	Intergenic	novelGene_5368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATACTGAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	51271220	51271036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_51271000_51271200
PB_novel_13296_0	chr14	+	147	1	Intergenic	novelGene_5369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	51384854	51385001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_51384900_51385000
PB_novel_13297_0	chr14	-	173	1	Intergenic	novelGene_5370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAACTTTAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	51393692	51393519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_51393500_51393700
PB_novel_13302_0	chr14	+	173	1	Intergenic	novelGene_5371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAAAAAACAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	52014856	52015029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_52014900_52015000
PB_novel_13306_0	chr14	+	151	1	Intergenic	novelGene_5372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATAATAATAAATCTTTT	NA	False	NA	NA	False	NA	NA	NA	52182304	52182455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_52182300_52182500
PB_novel_13310_0	chr14	+	165	1	Intergenic	novelGene_5373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	52295002	52295167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_52295000_52295200
PB_novel_13311_0	chr14	+	161	1	Intergenic	novelGene_5374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GGAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	52298105	52298266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_52298100_52298300
PB_novel_13314_1	chr14	+	177	1	Intergenic	novelGene_5375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	52316595	52316772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_52316600_52316800
PB_novel_13315_0	chr14	+	206	1	Intergenic	novelGene_5376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	52321092	52321298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_52321100_52321300
PB_novel_13317_0	chr14	+	175	1	Intergenic	novelGene_5381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTATTATGAAACA	3322	False	NA	NA	False	NA	NA	NA	52431263	52431438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_52431300_52431400
PB_novel_13320_0	chr14	+	3855	1	Antisense	novelGene_ENSMUSG00000060373.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGTCAAAAAAAAAAAAAAA	7435	False	NA	NA	False	NA	NA	NA	52335544	52339399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_52335500_52339400
PB_novel_13325_0	chr14	-	191	1	Intergenic	novelGene_5377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTTTGTTTAAAAAAAAAAA	6534	False	NA	NA	False	NA	NA	NA	52363174	52362983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_52363000_52363200
PB_novel_13330_0	chr14	-	174	1	Intergenic	novelGene_5378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	52391647	52391473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_52391500_52391600
PB_novel_13334_0	chr14	-	169	1	Intergenic	novelGene_5379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	3945	False	NA	NA	False	NA	NA	NA	52407094	52406925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_52406900_52407100
PB_novel_13335_0	chr14	-	169	1	Intergenic	novelGene_5380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	9990	False	NA	NA	False	NA	NA	NA	52407316	52407147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_52407100_52407300
PB_novel_13340_0	chr14	+	176	1	Intergenic	novelGene_5382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	52507322	52507498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_52507300_52507500
PB_novel_13343_0	chr14	+	170	1	Antisense	novelGene_ENSMUSG00000022160.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAAAAAAAAAAAGATGG	NA	False	NA	NA	False	NA	NA	NA	52534430	52534600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_52534400_52534600
PB_novel_13348_0	chr14	-	167	1	Intergenic	novelGene_5383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCTTACAAAAACAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	52555169	52555002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_52555000_52555200
PB_novel_13353_0	chr14	-	173	1	Intergenic	novelGene_5384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	52608105	52607932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_52607900_52608100
PB_novel_13354_0	chr14	-	239	1	Intergenic	novelGene_5385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACACAAATATCAAGTAGATA	NA	False	NA	NA	False	NA	NA	NA	52617534	52617295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_52617300_52617500
PB_novel_13364_0	chr14	+	271	1	Intergenic	novelGene_5386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACCAAGGAAAAATAAAGAAA	2590	False	NA	NA	False	ATTAAA	-8	NA	54467087	54467358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_54467100_54467400
PB_novel_13365_0	chr14	+	136	1	Intergenic	novelGene_5387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAACAAAAAC	10	False	NA	NA	False	NA	NA	NA	54467977	54468113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_54468000_54468100
PB_novel_13376_0	chr14	+	169	1	Intergenic	novelGene_5388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54660056	54660225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_54660100_54660200
PB_novel_13384_0	chr14	+	168	1	Intergenic	novelGene_5389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54775859	54776027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_54775900_54776000
PB_novel_13385_0	chr14	+	159	1	Intergenic	novelGene_5390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATATTTA	NA	False	NA	NA	False	NA	NA	NA	54777304	54777463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_54777300_54777500
PB_novel_13404_0	chr14	+	175	1	Intergenic	novelGene_5391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6119	False	NA	NA	False	NA	NA	NA	55069058	55069233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_55069100_55069200
PB_novel_13406_1	chr14	+	179	2	Antisense	novelGene_ENSMUSG00000057156.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAATTCAAATGGCT	3606	False	NA	NA	False	AATAAA	-5	NA	55098680	55102876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_55098845_55102861
PB_novel_13407_0	chr14	+	282	1	Intergenic	novelGene_5392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAGA	7213	False	NA	NA	False	NA	NA	NA	55102287	55102569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_55102300_55102600
PB_novel_13414_0	chr14	-	174	1	Intergenic	novelGene_5393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGACACAGCC	NA	False	NA	NA	False	NA	NA	NA	55283437	55283263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_55283300_55283400
PB_novel_13416_0	chr14	+	2555	1	Antisense	novelGene_ENSMUSG00000040721.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55326835	55329390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_55326800_55329400
PB_novel_13417_0	chr14	-	176	1	Intergenic	novelGene_5394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55359353	55359177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_55359200_55359400
PB_novel_13418_0	chr14	-	167	1	Intergenic	novelGene_5395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAGAAACAAAATG	NA	False	NA	NA	False	NA	NA	NA	55375746	55375579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_55375600_55375700
PB_novel_13419_0	chr14	-	158	1	Intergenic	novelGene_5396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	55392213	55392055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_55392100_55392200
PB_novel_13421_0	chr14	-	179	1	Intergenic	novelGene_5397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAACAGATT	3113	False	NA	NA	False	NA	NA	NA	55678684	55678505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_55678500_55678700
PB_novel_13425_0	chr14	+	157	1	Intergenic	novelGene_5398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATACATTTAAA	4104	False	NA	NA	False	NA	NA	NA	55772935	55773092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_55772900_55773100
PB_novel_13430_0	chr14	+	174	1	Intergenic	novelGene_5399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	55842770	55842944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_55842800_55842900
PB_novel_13434_0	chr14	-	168	1	Intergenic	novelGene_5400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	8878	False	NA	NA	False	NA	NA	NA	55891372	55891204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_55891200_55891400
PB_novel_13453_0	chr14	-	172	1	Intergenic	novelGene_5401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	56199368	56199196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_56199200_56199400
PB_novel_13454_0	chr14	-	165	1	Intergenic	novelGene_5402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAGAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	56200447	56200282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_56200300_56200400
PB_novel_13455_0	chr14	+	157	1	Intergenic	novelGene_5403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAAAATAAATATTTT	NA	False	NA	NA	False	NA	NA	NA	56620719	56620876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_56620700_56620900
PB_novel_13463_0	chr14	+	178	1	Intergenic	novelGene_5404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAGAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	56777539	56777717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_56777500_56777700
PB_novel_13466_0	chr14	-	156	1	Intergenic	novelGene_5405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	56827207	56827051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_56827100_56827200
PB_novel_13467_1	chr14	+	176	1	Intergenic	novelGene_5410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	266	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57009904	57010080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_57009900_57010100
PB_novel_13472_0	chr14	-	153	1	Intergenic	novelGene_5406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATTAATTAAA	NA	False	NA	NA	False	NA	NA	NA	56908395	56908242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_56908200_56908400
PB_novel_13475_0	chr14	-	3033	1	Intergenic	novelGene_5407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56948644	56945611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_56945600_56948600
PB_novel_13477_0	chr14	+	158	1	Intergenic	novelGene_5408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	56973430	56973588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_56973400_56973600
PB_novel_13478_0	chr14	+	155	1	Intergenic	novelGene_5409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAACACAAGGGCT	NA	False	NA	NA	False	NA	NA	NA	56974475	56974630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_56974500_56974600
PB_novel_13481_0	chr14	+	2770	1	Intergenic	novelGene_5411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57011630	57014400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_57011600_57014400
PB_novel_13492_0	chr14	-	177	1	Intergenic	novelGene_5412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	57134549	57134372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_57134400_57134500
PB_novel_13493_0	chr14	-	3368	1	Intergenic	novelGene_5413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAATAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57139256	57135888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_57135900_57139300
PB_novel_13507_0	chr14	+	179	1	Intergenic	novelGene_5414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57628440	57628619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_57628400_57628600
PB_novel_13510_1	chr14	+	178	1	Intergenic	novelGene_5415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57714395	57714573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_57714400_57714600
PB_novel_13512_0	chr14	-	152	1	Intergenic	novelGene_5416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAACAAATAATTTAA	NA	False	NA	NA	False	NA	NA	NA	57722961	57722809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_57722800_57723000
PB_novel_13514_0	chr14	-	172	1	Intergenic	novelGene_5417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGATTCTCA	7116	False	NA	NA	False	NA	NA	NA	57738978	57738806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_57738800_57739000
PB_novel_13518_0	chr14	-	176	1	Intergenic	novelGene_5418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57804693	57804517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_57804500_57804700
PB_novel_13523_0	chr14	+	175	1	Intergenic	novelGene_5419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAAG	872	False	NA	NA	False	NA	NA	NA	57890866	57891041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_57890900_57891000
PB_novel_13526_0	chr14	-	181	1	Intergenic	novelGene_5420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57892499	57892318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_57892300_57892500
PB_novel_13527_0	chr14	+	177	1	Intergenic	novelGene_5421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAATCTTAAAAAAA	6515	False	NA	NA	False	NA	NA	NA	57896509	57896686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_57896500_57896700
PB_novel_13534_0	chr14	-	188	1	Intergenic	novelGene_5422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTATTAAAAAAAAAAAAAA	8717	False	NA	NA	False	NA	NA	NA	57916757	57916569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_57916600_57916800
PB_novel_13537_0	chr14	+	158	1	Intergenic	novelGene_5423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAAATCAATAAA	NA	False	NA	NA	False	NA	NA	NA	57970667	57970825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_57970700_57970800
PB_novel_13540_0	chr14	+	181	1	Intergenic	novelGene_5424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAGAAAATGAATGG	NA	False	NA	NA	False	NA	NA	NA	58020490	58020671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_58020500_58020700
PB_novel_13549_0	chr14	+	191	1	Intergenic	novelGene_5427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	58157630	58157821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_58157600_58157800
PB_novel_13551_0	chr14	+	172	1	Intergenic	novelGene_5425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	58129454	58129626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_58129500_58129600
PB_novel_13552_0	chr14	+	176	1	Intergenic	novelGene_5426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGGGGAGT	NA	False	NA	NA	False	NA	NA	NA	58132282	58132458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_58132300_58132500
PB_novel_13554_0	chr14	-	176	1	Intergenic	novelGene_5428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAGGTAGA	NA	False	NA	NA	False	NA	NA	NA	58158118	58157942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_58157900_58158100
PB_novel_13557_0	chr14	-	137	1	Intergenic	novelGene_5429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAACAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	58172257	58172120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_58172100_58172300
PB_novel_13558_0	chr14	+	177	1	Intergenic	novelGene_5430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	58196289	58196466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_58196300_58196500
PB_novel_13563_0	chr14	-	178	1	Intergenic	novelGene_5431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAACATGCTCAG	NA	False	NA	NA	False	NA	NA	NA	59699535	59699357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_59699400_59699500
PB_novel_13568_0	chr14	+	169	1	Intergenic	novelGene_5432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTATTTTAAAAAAAAAAAAG	NA	False	NA	3	True	NA	NA	NA	59816626	59816795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_59816600_59816800
PB_novel_13574_0	chr14	-	175	1	Intergenic	novelGene_5433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATTGTTCTTTAACCA	NA	False	NA	NA	False	NA	NA	NA	60791001	60790826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_60790800_60791000
PB_novel_13581_0	chr14	-	175	1	Intergenic	novelGene_5434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATTCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61186774	61186599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_61186600_61186800
PB_novel_13585_2	chr14	-	168	1	Intergenic	novelGene_5435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAATAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61336552	61336384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_61336400_61336600
PB_novel_13586_0	chr14	-	174	1	Intergenic	novelGene_5436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	9525	False	NA	NA	False	NA	NA	NA	61361385	61361211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_61361200_61361400
PB_novel_13591_0	chr14	-	187	1	Intergenic	novelGene_5437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGACAATTAGAC	NA	False	NA	NA	False	NA	NA	NA	61485339	61485152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_61485200_61485300
PB_novel_13595_0	chr14	+	156	1	Intergenic	novelGene_5438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAATAATAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61637273	61637429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_61637300_61637400
PB_novel_13597_0	chr14	+	179	1	Intergenic	novelGene_5439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAGAAACCTGAAA	9125	False	NA	NA	False	NA	NA	NA	61657585	61657764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_61657600_61657800
PB_novel_13610_0	chr14	+	176	1	Antisense	novelGene_ENSMUSG00000098183.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATACTTGGCAC	1891	False	NA	NA	False	NA	NA	NA	61863571	61863747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_61863600_61863700
PB_novel_13611_0	chr14	+	160	1	Antisense	novelGene_ENSMUSG00000098183.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTAAAAAAAAC	2440	False	NA	NA	False	NA	NA	NA	61864120	61864280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_61864100_61864300
PB_novel_13614_0	chr14	-	183	1	Intergenic	novelGene_5440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATAAATCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	61941489	61941306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_61941300_61941500
PB_novel_13621_0	chr14	+	171	1	Intergenic	novelGene_5441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGACACAGGCTA	NA	False	NA	NA	False	NA	NA	NA	62757073	62757244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_62757100_62757200
PB_novel_13635_0	chr14	+	173	1	Intergenic	novelGene_5442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAGATAATC	NA	False	NA	NA	False	NA	NA	NA	63525992	63526165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_63526000_63526200
PB_novel_13636_0	chr14	+	169	1	Intergenic	novelGene_5443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAATTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63574452	63574621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_63574500_63574600
PB_novel_13639_0	chr14	+	1003	1	Intergenic	novelGene_5444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	273	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGTCTCTG	NA	False	NA	NA	False	AATATA	-29	NA	63744600	63745603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_63744600_63745600
PB_novel_13643_0	chr14	+	175	1	Intergenic	novelGene_5445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAGAA	7688	False	NA	NA	False	NA	NA	NA	63756008	63756183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_63756000_63756200
PB_novel_13648_0	chr14	-	177	1	Intergenic	novelGene_5446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	63796860	63796683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_63796700_63796900
PB_novel_13652_0	chr14	-	5339	1	Intergenic	novelGene_5447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	1602	False	NA	NA	False	NA	NA	NA	63858678	63853339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_63853300_63858700
PB_novel_13655_0	chr14	+	176	1	Intergenic	novelGene_5448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAGAAAAGAAGAGAAAA	8611	False	NA	NA	False	NA	NA	NA	64449706	64449882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_64449700_64449900
PB_novel_13663_0	chr14	-	174	1	Intergenic	novelGene_5449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAACTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	64859117	64858943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_64858900_64859100
PB_novel_13665_0	chr14	-	159	1	Intergenic	novelGene_5450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATCTTTTAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	64869047	64868888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_64868900_64869000
PB_novel_13681_0	chr14	-	3128	1	Intergenic	novelGene_5451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAGAATTATTAAAA	9582	False	NA	NA	False	AATACA	-34	NA	65252858	65249730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_65249700_65252900
PB_novel_13688_0	chr14	+	163	1	Intergenic	novelGene_5452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAATAAATAAAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	65340673	65340836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_65340700_65340800
PB_novel_13689_0	chr14	-	157	1	Intergenic	novelGene_5453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65344745	65344588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_65344600_65344700
PB_novel_13700_0	chr14	+	179	1	Intergenic	novelGene_5454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATGT	3840	False	NA	NA	False	NA	NA	NA	66048804	66048983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_66048800_66049000
PB_novel_13703_0	chr14	-	175	1	Intergenic	novelGene_5455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAAAGAACTTTG	NA	False	NA	NA	False	NA	NA	NA	66129727	66129552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_66129600_66129700
PB_novel_13705_0	chr14	+	171	1	Intergenic	novelGene_5456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	66248259	66248430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_66248300_66248400
PB_novel_13715_0	chr14	+	2675	1	Intergenic	novelGene_5457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCCAAAAAAAAAAAAAAAA	3481	False	NA	NA	False	NA	NA	NA	67241207	67243882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_67241200_67243900
PB_novel_13717_0	chr14	-	2187	1	Intergenic	novelGene_5458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67294585	67292398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_67292400_67294600
PB_novel_13718_0	chr14	+	1308	1	Antisense	novelGene_ENSMUSG00000022052.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAGGAAAAAAAAAAA	979	False	NA	NA	False	NA	NA	NA	67298971	67300279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_67299000_67300300
PB_novel_13723_0	chr14	-	178	1	Intergenic	novelGene_5460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGATTACAGTAA	NA	False	NA	NA	False	NA	NA	NA	67751360	67751182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_67751200_67751400
PB_novel_13727_0	chr14	+	1220	1	Intergenic	novelGene_5461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67926295	67927515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_67926300_67927500
PB_novel_13728_0	chr14	+	1916	1	Antisense	novelGene_ENSMUSG00000048922.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67931152	67933068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_67931200_67933100
PB_novel_13730_0	chr14	+	3559	1	Antisense	novelGene_ENSMUSG00000048922.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAATCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67938387	67941946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_67938400_67941900
PB_novel_13733_0	chr14	+	179	1	Intergenic	novelGene_5462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAACTAA	4766	False	NA	NA	False	NA	NA	NA	68091480	68091659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_68091500_68091700
PB_novel_13737_0	chr14	-	175	1	Intergenic	novelGene_5463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAGAGAAGGTCA	NA	False	NA	NA	False	NA	NA	NA	68327259	68327084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_68327100_68327300
PB_novel_13739_1	chr14	+	178	1	Intergenic	novelGene_5464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAATAAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	68760489	68760667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_68760500_68760700
PB_novel_13743_11	chr14	+	1790	3	Antisense	novelGene_ENSMUSG00000034248.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69481429	69486690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_69482806_69485031_69485086_69486330
PB_novel_13743_2	chr14	+	3032	2	Antisense	novelGene_ENSMUSG00000034248.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	147	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTGAAAGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69481429	69486687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_69482806_69485031
PB_novel_13743_6	chr14	+	1643	3	Antisense	novelGene_ENSMUSG00000034248.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTGAAAGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69481429	69486687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_69482806_69485031_69485086_69486474
PB_novel_13744_0	chr14	+	5258	1	Antisense	novelGene_ENSMUSG00000034248.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTGAAAGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69481429	69486687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_69481400_69486700
PB_novel_13753_0	chr14	+	514	1	Antisense	novelGene_ENSMUSG00000022075.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AAAAAG	-30	NA	70042504	70043018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_70042500_70043000
PB_novel_13754_0	chr14	-	170	1	Intergenic	novelGene_5465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAGGAAAAGAAAA	1283	False	NA	NA	False	NA	NA	NA	70055709	70055539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_70055500_70055700
PB_novel_13757_0	chr14	+	175	1	Intergenic	novelGene_5466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	70406377	70406552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_70406400_70406600
PB_novel_13759_0	chr14	+	174	1	Intergenic	novelGene_5467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGCTAT	NA	False	NA	NA	False	NA	NA	NA	70427590	70427764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_70427600_70427800
PB_novel_13762_0	chr14	-	171	1	Intergenic	novelGene_5468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	7321	False	NA	NA	False	NA	NA	NA	70628636	70628465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_70628500_70628600
PB_novel_13771_0	chr14	+	176	1	Intergenic	novelGene_5469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	560	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGGAATAT	NA	False	NA	NA	False	NA	NA	NA	70998294	70998470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_70998300_70998500
PB_novel_13782_0	chr14	-	159	1	Intergenic	novelGene_5470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATTAAAAAAAG	5855	False	NA	NA	False	NA	NA	NA	73352558	73352399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_73352400_73352600
PB_novel_13789_0	chr14	+	181	1	Intergenic	novelGene_5471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	672	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAACTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	73681856	73682037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_73681900_73682000
PB_novel_13792_0	chr14	-	176	1	Intergenic	novelGene_5472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	73820499	73820323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_73820300_73820500
PB_novel_13794_0	chr14	-	1709	1	FSM	ENSMUSG00000057886.6	ENSMUST00000181108.2	552	1	-75	-1082	-75	1082	mono-exon	FALSE	NA	NA	NA	NA	NA	1368	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	74193066	74191357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_-_74191400_74193100
PB_novel_13799_0	chr14	-	175	1	Intergenic	novelGene_5473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	75145808	75145633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_75145600_75145800
PB_novel_13817_0	chr14	+	135	1	Intergenic	novelGene_5474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75779576	75779711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_75779600_75779700
PB_novel_13831_0	chr14	-	1326	1	Intergenic	novelGene_5475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGCAACAAAAAAAAT	NA	False	NA	NA	False	AATAAA	-5	NA	76168332	76167006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_76167000_76168300
PB_novel_13832_0	chr14	-	172	1	Intergenic	novelGene_5476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAAGCGTTTATAAG	NA	False	NA	NA	False	NA	NA	NA	76185920	76185748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_76185700_76185900
PB_novel_13834_0	chr14	+	2498	1	Intergenic	novelGene_5477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76235133	76237631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_76235100_76237600
PB_novel_13836_0	chr14	+	166	1	Intergenic	novelGene_5478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76375688	76375854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_76375700_76375900
PB_novel_13837_0	chr14	-	174	1	Intergenic	novelGene_5479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATTAGG	NA	False	NA	NA	False	NA	NA	NA	76379689	76379515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_76379500_76379700
PB_novel_13846_0	chr14	-	1463	1	Intergenic	novelGene_5480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACTAAAAAAAAAAAAA	1370	False	NA	NA	False	NA	NA	NA	76672484	76671021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_76671000_76672500
PB_novel_13860_0	chr14	-	175	1	Intergenic	novelGene_5481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	77229697	77229522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_77229500_77229700
PB_novel_13862_0	chr14	-	176	1	Intergenic	novelGene_5482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	9526	False	NA	NA	False	NA	NA	NA	77726081	77725905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_77725900_77726100
PB_novel_13864_0	chr14	+	1282	1	Antisense	novelGene_ENSMUSG00002076975.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	77777179	77778461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_77777200_77778500
PB_novel_13865_2	chr14	-	165	1	Intergenic	novelGene_5483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	401	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATCCCCATA	NA	False	NA	NA	False	NA	NA	NA	77811151	77810986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_77811000_77811200
PB_novel_13874_1	chr14	-	178	1	Intergenic	novelGene_5484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	79330454	79330276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_79330300_79330500
PB_novel_13876_1	chr14	+	179	1	Intergenic	novelGene_5485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	1653	False	NA	NA	False	NA	NA	NA	79518223	79518402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_79518200_79518400
PB_novel_13877_0	chr14	+	160	1	Intergenic	novelGene_5486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAAGAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	79560503	79560663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_79560500_79560700
PB_novel_13885_0	chr14	-	163	1	Intergenic	novelGene_5487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	79620634	79620471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_79620500_79620600
PB_novel_13889_0	chr14	-	174	1	Intergenic	novelGene_5488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAGAAAAAAAAAAAGA	7592	False	NA	NA	False	NA	NA	NA	79634553	79634379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_79634400_79634600
PB_novel_13891_0	chr14	+	176	1	Intergenic	novelGene_5489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7712	False	NA	NA	False	NA	NA	NA	79712019	79712195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_79712000_79712200
PB_novel_13902_0	chr14	-	379	1	Intergenic	novelGene_5490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	79828516	79828137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_79828100_79828500
PB_novel_13912_0	chr14	-	171	1	Intergenic	novelGene_5491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACTAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	81412232	81412061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_81412100_81412200
PB_novel_13913_0	chr14	+	177	1	Intergenic	novelGene_5492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACCACACAACAC	NA	False	NA	NA	False	NA	NA	NA	81711413	81711590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_81711400_81711600
PB_novel_13915_0	chr14	-	6822	1	Intergenic	novelGene_5493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82035199	82028377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_82028400_82035200
PB_novel_13917_0	chr14	-	155	1	Intergenic	novelGene_5494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAATAAATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83619178	83619023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_83619000_83619200
PB_novel_13918_0	chr14	+	172	1	Intergenic	novelGene_5495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTAAAAAAAAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	83909494	83909666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_83909500_83909700
PB_novel_13923_0	chr14	+	175	1	Intergenic	novelGene_5496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	85998123	85998298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_85998100_85998300
PB_novel_13924_0	chr14	+	189	1	Intergenic	novelGene_5497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATCTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86241248	86241437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_86241200_86241400
PB_novel_13925_0	chr14	+	176	1	Intergenic	novelGene_5498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAATAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	86799136	86799312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_86799100_86799300
PB_novel_13931_0	chr14	+	1901	1	Intergenic	novelGene_5499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87125621	87127522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_87125600_87127500
PB_novel_13939_0	chr14	+	174	1	Intergenic	novelGene_5501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	87716723	87716897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_87716700_87716900
PB_novel_13944_0	chr14	-	176	1	Intergenic	novelGene_5502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAAAAAAACTTTTG	NA	False	NA	NA	False	NA	NA	NA	89628025	89627849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_89627800_89628000
PB_novel_13954_1	chr14	-	164	1	Intergenic	novelGene_5503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	93941984	93941820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_93941800_93942000
PB_novel_13955_0	chr14	-	176	1	Intergenic	novelGene_5504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATATATATATATTTT	NA	False	NA	NA	False	NA	NA	NA	93969516	93969340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_93969300_93969500
PB_novel_13959_0	chr14	+	173	1	Intergenic	novelGene_5505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAACACTACAG	NA	False	NA	NA	False	NA	NA	NA	95788881	95789054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_95788900_95789100
PB_novel_13960_0	chr14	-	132	1	Intergenic	novelGene_5506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	95975331	95975199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_95975200_95975300
PB_novel_13962_0	chr14	-	176	1	Intergenic	novelGene_5507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAGAAAGCAACAT	NA	False	NA	NA	False	NA	NA	NA	96425469	96425293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_96425300_96425500
PB_novel_13964_0	chr14	+	174	1	Intergenic	novelGene_5508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGGAGAT	NA	False	NA	NA	False	NA	NA	NA	99186989	99187163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_99187000_99187200
PB_novel_13967_0	chr14	+	174	1	Intergenic	novelGene_5509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAATTAAAA	6771	False	NA	NA	False	NA	NA	NA	99232940	99233114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_99232900_99233100
PB_novel_13970_0	chr14	-	180	1	Intergenic	novelGene_5510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	99300192	99300012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_99300000_99300200
PB_novel_13976_0	chr14	+	161	1	Intergenic	novelGene_5511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAAAAGATCTCAATT	6429	False	NA	NA	False	NA	NA	NA	99345586	99345747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_99345600_99345700
PB_novel_13978_0	chr14	+	177	1	Intergenic	novelGene_5512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99408851	99409028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_99408900_99409000
PB_novel_13981_0	chr14	+	150	1	Intergenic	novelGene_5513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACATTCATAAAATTAATCT	NA	False	NA	NA	False	NA	NA	NA	99481583	99481733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_99481600_99481700
PB_novel_13987_1	chr14	+	2839	2	Genic_Genomic	ENSMUSG00000005148.9	novel	3352	4	NA	NA	11102	-1629	multi-exon	FALSE	canonical	1	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAAAGGAAA	NA	False	NA	NA	False	TTTAAA	-19	NA	99547691	99550843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_+_99549611_99549923
PB_novel_13992_0	chr14	-	171	1	Intergenic	novelGene_5514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99599001	99598830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_99598800_99599000
PB_novel_13994_0	chr14	+	175	1	Intergenic	novelGene_5515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAGAAAAGCTTT	NA	False	NA	NA	False	NA	NA	NA	99624190	99624365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_99624200_99624400
PB_novel_13996_0	chr14	-	175	1	Intergenic	novelGene_5516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATCACTGAATGA	NA	False	NA	NA	False	NA	NA	NA	99782621	99782446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_99782400_99782600
PB_novel_13997_0	chr14	+	174	1	Intergenic	novelGene_5517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAAGAGATAT	NA	False	NA	NA	False	NA	NA	NA	99792524	99792698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_99792500_99792700
PB_novel_14000_0	chr14	-	129	1	Intergenic	novelGene_5518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100129353	100129224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_100129200_100129400
PB_novel_14001_0	chr14	+	1026	1	Intergenic	novelGene_5519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100161852	100162878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_100161900_100162900
PB_novel_14011_0	chr14	+	176	1	Intergenic	novelGene_5520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	322	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAAAGACACCCTGA	NA	False	NA	NA	False	NA	NA	NA	101857573	101857749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_101857600_101857700
PB_novel_14018_0	chr14	-	177	1	Intergenic	novelGene_5521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	102096439	102096262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_102096300_102096400
PB_novel_14022_0	chr14	-	189	1	Intergenic	novelGene_5522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATCTGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103312026	103311837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_103311800_103312000
PB_novel_14030_1	chr14	-	178	1	Intergenic	novelGene_5523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	103948025	103947847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_103947800_103948000
PB_novel_14031_0	chr14	-	176	1	Intergenic	novelGene_5524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGACAGAGAG	NA	False	NA	NA	False	NA	NA	NA	104178347	104178171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_104178200_104178300
PB_novel_14035_0	chr14	-	689	1	Genic_Genomic	ENSMUSG00000091509.8_ENSMUSG00000022119.16	novel	NA	NA	NA	NA	-530	447	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105352642	105351953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_-_105352000_105352600
PB_novel_14036_0	chr14	+	3361	1	Intergenic	novelGene_5525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105372452	105375813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_105372500_105375800
PB_novel_14049_0	chr14	+	173	1	Antisense	novelGene_ENSMUSG00000022114.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	8944	False	NA	NA	False	NA	NA	NA	106129853	106130026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_106129900_106130000
PB_novel_14055_0	chr14	+	165	1	Intergenic	novelGene_5526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	109069023	109069188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_109069000_109069200
PB_novel_14065_0	chr14	-	172	1	Intergenic	novelGene_5527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	447	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTAAAAAAAAACAAAACCT	NA	False	NA	NA	False	NA	NA	NA	112770749	112770577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_112770600_112770700
PB_novel_14066_0	chr14	-	132	1	Intergenic	novelGene_5528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113332175	113332043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_113332000_113332200
PB_novel_14072_0	chr14	-	168	1	Intergenic	novelGene_5529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	114772206	114772038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_114772000_114772200
PB_novel_14073_0	chr14	+	177	1	Intergenic	novelGene_5530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAATCAGTAATAAA	NA	False	NA	NA	False	NA	NA	NA	114902958	114903135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_114903000_114903100
PB_novel_14079_0	chr14	+	171	1	Intergenic	novelGene_5531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATTTTAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	118331660	118331831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_118331700_118331800
PB_novel_14090_0	chr14	+	1896	1	Antisense	novelGene_ENSMUSG00000032849.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAAAATAAAAG	5366	False	NA	NA	False	NA	NA	NA	118943324	118945220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_+_118943300_118945200
PB_novel_14097_0	chr14	+	2588	1	FSM	ENSMUSG00000115684.2	ENSMUST00000227446.2	663	1	-130	-1795	-130	1795	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAATTAAAAAAAAAAA	2563	False	NA	NA	False	AATAAA	-13	NA	119515705	119518293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_119515700_119518300
PB_novel_14104_0	chr14	+	1363	1	Genic_Genomic	ENSMUSG00000051615.15	novel	NA	NA	NA	NA	-71	-27459	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATGCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-4	NA	120715784	120717147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr14_+_120715800_120717100
PB_novel_14111_0	chr14	-	177	1	Intergenic	novelGene_5532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	121054752	121054575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_121054600_121054800
PB_novel_14112_0	chr14	+	175	1	Intergenic	novelGene_5533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGGGGGA	NA	False	NA	NA	False	NA	NA	NA	121057281	121057456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_121057300_121057500
PB_novel_14113_0	chr14	+	177	1	Intergenic	novelGene_5534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121075877	121076054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_121075900_121076100
PB_novel_14114_0	chr14	+	167	1	Intergenic	novelGene_5535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAACAAAAAACAAAG	NA	False	NA	NA	False	NA	NA	NA	121083060	121083227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_121083100_121083200
PB_novel_14136_0	chr14	-	182	1	Intergenic	novelGene_5539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121839211	121839029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_121839000_121839200
PB_novel_14140_0	chr14	-	168	1	Intergenic	novelGene_5536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAGAAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	121724972	121724804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_121724800_121725000
PB_novel_14143_0	chr14	+	306	1	Intergenic	novelGene_5537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGTCAAAAT	NA	False	NA	NA	False	NA	NA	NA	121740707	121741013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_121740700_121741000
PB_novel_14144_0	chr14	-	165	1	Intergenic	novelGene_5538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121816014	121815849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_121815800_121816000
PB_novel_14155_0	chr14	-	173	1	Intergenic	novelGene_5540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGTTAAAAAGG	8735	False	NA	NA	False	NA	NA	NA	122430514	122430341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_122430300_122430500
PB_novel_14176_0	chr14	-	240	1	Antisense	novelGene_ENSMUSG00000061524.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	122717068	122716828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr14_-_122716800_122717100
PB_novel_14177_0	chr14	+	175	1	Intergenic	novelGene_5541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	122770466	122770641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_122770500_122770600
PB_novel_14179_0	chr14	-	176	1	Intergenic	novelGene_5542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	122788133	122787957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_122788000_122788100
PB_novel_14180_0	chr14	-	174	1	Intergenic	novelGene_5543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2164	False	NA	NA	False	NA	NA	NA	122915429	122915255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_122915300_122915400
PB_novel_14186_0	chr14	-	163	1	Intergenic	novelGene_5544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATACATCTTTAAAAAAA	9445	False	NA	NA	False	NA	NA	NA	124548103	124547940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_124547900_124548100
PB_novel_14187_0	chr14	+	179	1	Intergenic	novelGene_5545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAACTTCAAC	NA	False	NA	NA	False	NA	NA	NA	124620596	124620775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_124620600_124620800
PB_novel_14189_0	chr14	+	174	1	Intergenic	novelGene_5546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAACATAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	124826817	124826991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_124826800_124827000
PB_novel_14190_0	chr14	-	152	1	Intergenic	novelGene_5547	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACATATAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124905939	124905787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_124905800_124905900
PB_novel_14192_0	chr14	+	172	1	Intergenic	novelGene_5548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124999147	124999319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_124999100_124999300
PB_novel_14204_0	chr15	+	176	1	Intergenic	novelGene_2482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	5132681	5132857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_5132700_5132900
PB_novel_14209_0	chr15	-	159	1	Intergenic	novelGene_2483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAAAATAAATT	NA	False	NA	NA	False	NA	NA	NA	5181155	5180996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_5181000_5181200
PB_novel_14223_0	chr15	-	164	1	Intergenic	novelGene_2484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAATAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6197831	6197667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_6197700_6197800
PB_novel_14232_0	chr15	-	176	1	Intergenic	novelGene_2485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAATGCATTCAAA	NA	False	NA	NA	False	NA	NA	NA	7089695	7089519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_7089500_7089700
PB_novel_14233_0	chr15	-	129	1	Intergenic	novelGene_2486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAAAGATAAA	6549	False	NA	NA	False	NA	NA	NA	7109249	7109120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_7109100_7109200
PB_novel_14237_0	chr15	+	176	1	Intergenic	novelGene_2487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGCTTTAA	NA	False	NA	NA	False	NA	NA	NA	7657920	7658096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_7657900_7658100
PB_novel_14243_0	chr15	+	168	1	Intergenic	novelGene_2488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAAAATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8036214	8036382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_8036200_8036400
PB_novel_14253_0	chr15	-	178	1	Intergenic	novelGene_2489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	8155779	8155601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_8155600_8155800
PB_novel_14256_2	chr15	-	185	1	Intergenic	novelGene_2491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	286	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8227517	8227332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_8227300_8227500
PB_novel_14257_0	chr15	-	1956	1	Antisense	novelGene_ENSMUSG00000022142.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	8190860	8188904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_8188900_8190900
PB_novel_14262_0	chr15	+	174	1	Intergenic	novelGene_2490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	8214209	8214383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_8214200_8214400
PB_novel_14265_0	chr15	+	176	1	Intergenic	novelGene_2492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	8290496	8290672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_8290500_8290700
PB_novel_14266_0	chr15	-	156	1	Intergenic	novelGene_2493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTTAAAAAAAAGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	8334084	8333928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_8333900_8334100
PB_novel_14280_0	chr15	+	160	1	Intergenic	novelGene_2494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAGACAAGACAG	NA	False	NA	NA	False	NA	NA	NA	8650714	8650874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_8650700_8650900
PB_novel_14292_0	chr15	+	174	1	Intergenic	novelGene_2495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	2441	False	NA	NA	False	NA	NA	NA	8834768	8834942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_8834800_8834900
PB_novel_14293_0	chr15	-	176	1	Intergenic	novelGene_2496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	322	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAACCT	NA	False	NA	NA	False	NA	NA	NA	8835156	8834980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_8835000_8835200
PB_novel_14295_0	chr15	+	188	1	Intergenic	novelGene_2497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATGTAG	5414	False	NA	NA	False	NA	NA	NA	8843488	8843676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_8843500_8843700
PB_novel_14296_0	chr15	+	160	1	Intergenic	novelGene_2498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	5797	False	NA	NA	False	NA	NA	NA	8843871	8844031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_8843900_8844000
PB_novel_14299_0	chr15	-	3726	1	Antisense	novelGene_ENSMUSG00000022253.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9076997	9073271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_9073300_9077000
PB_novel_14307_0	chr15	-	176	1	Intergenic	novelGene_2499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	9170416	9170240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_9170200_9170400
PB_novel_14308_0	chr15	-	170	1	Intergenic	novelGene_2500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9191573	9191403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_9191400_9191600
PB_novel_14314_0	chr15	+	177	1	Intergenic	novelGene_2501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	9899884	9900061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_9899900_9900100
PB_novel_14318_0	chr15	+	853	1	Intergenic	novelGene_2502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10482021	10482874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_10482000_10482900
PB_novel_14323_0	chr15	-	173	1	Intergenic	novelGene_2503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAATAATAATTTTTA	NA	False	NA	NA	False	NA	NA	NA	10604840	10604667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_10604700_10604800
PB_novel_14325_0	chr15	+	1163	1	Intergenic	novelGene_2504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10630389	10631552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_10630400_10631600
PB_novel_14327_0	chr15	+	5511	1	Intergenic	novelGene_2505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10705521	10711032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_10705500_10711000
PB_novel_14331_0	chr15	-	167	1	Intergenic	novelGene_2506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTTTTTTAAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11471887	11471720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_11471700_11471900
PB_novel_14337_0	chr15	-	1661	2	Genic_Genomic	ENSMUSG00000107344.2	novel	363	1	NA	NA	-5327	620	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAATGAAAAGGAG	NA	False	NA	NA	False	AATAAA	-11	NA	12037340	12031030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_12032054_12036702
PB_novel_14340_0	chr15	-	4403	1	Intergenic	novelGene_2507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACATAAAAAAAAAAAAAAAA	3931	False	NA	NA	False	NA	NA	NA	12133999	12129596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_12129600_12134000
PB_novel_14340_2	chr15	-	3246	2	Antisense	novelGene_ENSMUSG00000022201.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACATAAAAAAAAAAAAAAAA	3931	False	NA	NA	False	NA	NA	NA	12133999	12129596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_12130934_12132090
PB_novel_14341_0	chr15	+	173	1	Intergenic	novelGene_2508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAAAACGCCTGAC	3178	False	NA	NA	False	NA	NA	NA	12139756	12139929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_12139800_12139900
PB_novel_14345_0	chr15	-	164	1	Intergenic	novelGene_2509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAAAAAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	12203623	12203459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_12203500_12203600
PB_novel_14354_0	chr15	-	2493	1	Intergenic	novelGene_2510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-19	NA	12329269	12326776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_12326800_12329300
PB_novel_14355_0	chr15	-	177	1	Intergenic	novelGene_2511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12329712	12329535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_12329500_12329700
PB_novel_14356_0	chr15	-	173	1	Intergenic	novelGene_2512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	12337612	12337439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_12337400_12337600
PB_novel_14361_0	chr15	-	178	1	Intergenic	novelGene_2513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATGCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12566738	12566560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_12566600_12566700
PB_novel_14373_0	chr15	-	166	1	Intergenic	novelGene_2514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATTTC	NA	False	NA	NA	False	NA	NA	NA	13645403	13645237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_13645200_13645400
PB_novel_14383_0	chr15	-	168	1	Intergenic	novelGene_2515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAAGAATGA	NA	False	NA	NA	False	NA	NA	NA	17131951	17131783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_17131800_17132000
PB_novel_14385_0	chr15	+	174	1	Intergenic	novelGene_2516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAACAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	19376329	19376503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_19376300_19376500
PB_novel_14388_2	chr15	-	175	1	Intergenic	novelGene_2517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20042276	20042101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_20042100_20042300
PB_novel_14389_1	chr15	-	174	1	Intergenic	novelGene_2518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACAGTAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	20252884	20252710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_20252700_20252900
PB_novel_14392_0	chr15	-	173	1	Intergenic	novelGene_2519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTAAATCTTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20932388	20932215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_20932200_20932400
PB_novel_14401_0	chr15	-	176	1	Intergenic	novelGene_2520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAGATATTATATT	NA	False	NA	NA	False	NA	NA	NA	23919895	23919719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_23919700_23919900
PB_novel_14406_0	chr15	-	176	1	Intergenic	novelGene_2521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	24424278	24424102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_24424100_24424300
PB_novel_14413_0	chr15	+	166	1	Intergenic	novelGene_2522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATACTAAGTC	NA	False	NA	NA	False	NA	NA	NA	25545404	25545570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_25545400_25545600
PB_novel_14414_0	chr15	-	156	1	Intergenic	novelGene_2523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	25571757	25571601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_25571600_25571800
PB_novel_14415_0	chr15	-	195	1	Intergenic	novelGene_2524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAATTCCG	NA	False	NA	NA	False	NA	NA	NA	25618762	25618567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_25618600_25618800
PB_novel_14419_0	chr15	-	151	1	Intergenic	novelGene_2525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACATATAATAAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25718759	25718608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_25718600_25718800
PB_novel_14420_0	chr15	+	139	1	Intergenic	novelGene_2526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAATAAAAACC	5114	False	NA	NA	False	NA	NA	NA	25718991	25719130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_25719000_25719100
PB_novel_14421_0	chr15	-	177	1	Intergenic	novelGene_2527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAGAACAG	NA	False	NA	NA	False	NA	NA	NA	25741534	25741357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_25741400_25741500
PB_novel_14423_0	chr15	-	203	1	Intergenic	novelGene_2528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTTAAAAAAAAGATTTATT	NA	False	NA	NA	False	NA	NA	NA	25771417	25771214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_25771200_25771400
PB_novel_14429_0	chr15	+	176	1	Intergenic	novelGene_2529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27184095	27184271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_27184100_27184300
PB_novel_14434_0	chr15	+	168	1	Intergenic	novelGene_2530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27565353	27565521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_27565400_27565500
PB_novel_14444_0	chr15	+	181	1	Intergenic	novelGene_2531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28035185	28035366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_28035200_28035400
PB_novel_14447_0	chr15	-	177	1	Intergenic	novelGene_2532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	257	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAATAT	NA	False	NA	NA	False	NA	NA	NA	29283692	29283515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_29283500_29283700
PB_novel_14449_0	chr15	-	176	1	Intergenic	novelGene_2533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAAGAAAACTA	NA	False	NA	NA	False	NA	NA	NA	29490616	29490440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_29490400_29490600
PB_novel_14451_1	chr15	-	176	1	Intergenic	novelGene_2534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATACTC	NA	False	NA	NA	False	NA	NA	NA	30690679	30690503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_30690500_30690700
PB_novel_14460_0	chr15	+	2420	1	Antisense	novelGene_ENSMUSG00000115224.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	AATAAA	-30	NA	31519075	31521495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_31519100_31521500
PB_novel_14462_0	chr15	+	1263	1	Intergenic	novelGene_2535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAGA	-8	NA	31531306	31532569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_31531300_31532600
PB_novel_14464_0	chr15	+	175	1	Intergenic	novelGene_2536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	31559191	31559366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_31559200_31559400
PB_novel_14468_0	chr15	-	157	1	Antisense	novelGene_ENSMUSG00000039065.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	31619315	31619158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_31619200_31619300
PB_novel_14470_0	chr15	-	165	1	Intergenic	novelGene_2537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAATAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	31640751	31640586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_31640600_31640800
PB_novel_14472_0	chr15	-	3765	1	Intergenic	novelGene_2538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32938340	32934575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_32934600_32938300
PB_novel_14474_0	chr15	+	2275	1	Intergenic	novelGene_2539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGCATACTAAAAAAAAAAAA	144	False	NA	NA	False	NA	NA	NA	33221529	33223804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_33221500_33223800
PB_novel_14475_11	chr15	+	6892	3	Genic_Genomic	ENSMUSG00000115318.2	novel	2906	1	NA	NA	1	4112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33831594	33838611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_33836952_33837043_33837499_33837531
PB_novel_14475_12	chr15	+	7015	1	FSM	ENSMUSG00000115318.2	ENSMUST00000227474.2	2906	1	3	-4112	3	4112	mono-exon	FALSE	NA	NA	NA	NA	NA	300	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33831596	33838611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_33831600_33838600
PB_novel_14475_13	chr15	+	6980	2	Genic_Genomic	ENSMUSG00000115318.2	novel	2906	1	NA	NA	2	4112	multi-exon	FALSE	canonical	3	117	junction_1	0	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33831595	33838611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_33837513_33837548
PB_novel_14475_9	chr15	+	6889	3	Genic_Genomic	ENSMUSG00000115318.2	novel	2906	1	NA	NA	1	4112	multi-exon	TRUE	non_canonical	0	0	junction_1	58.5	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33831594	33838611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_33836952_33837043_33837513_33837548
PB_novel_14476_0	chr15	+	2628	2	Genic_Genomic	ENSMUSG00000115318.2	novel	2906	1	NA	NA	2	4112	multi-exon	FALSE	canonical	3	15	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33831595	33838611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_33831870_33836257
PB_novel_14477_0	chr15	-	177	1	Intergenic	novelGene_2540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATCTTTAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	34042753	34042576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_34042600_34042800
PB_novel_14486_0	chr15	+	158	1	Intergenic	novelGene_2541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAATAAATAAAAA	6010	False	NA	NA	False	NA	NA	NA	34244750	34244908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_34244800_34244900
PB_novel_14488_0	chr15	-	181	1	Intergenic	novelGene_2542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAGAGAGAGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	34295553	34295372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_34295400_34295600
PB_novel_14502_0	chr15	+	176	1	Intergenic	novelGene_2543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	35091047	35091223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_35091000_35091200
PB_novel_14504_0	chr15	-	178	1	Intergenic	novelGene_2544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACAAACAAACACCA	NA	False	NA	NA	False	NA	NA	NA	35281737	35281559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_35281600_35281700
PB_novel_14505_0	chr15	-	177	1	Intergenic	novelGene_2545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	35363509	35363332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_35363300_35363500
PB_novel_14517_0	chr15	-	4639	1	Antisense	novelGene_ENSMUSG00000037646.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35874313	35869674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_35869700_35874300
PB_novel_14522_0	chr15	-	185	1	Intergenic	novelGene_2546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACCAAAACAT	NA	False	NA	NA	False	NA	NA	NA	36171159	36170974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_36171000_36171200
PB_novel_14525_0	chr15	+	175	1	Intergenic	novelGene_2547	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	321	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACACCATAGTT	NA	False	NA	NA	False	NA	NA	NA	36459657	36459832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_36459700_36459800
PB_novel_14533_0	chr15	+	3715	2	Antisense	novelGene_ENSMUSG00000115127.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAATAAAATTTAA	NA	False	NA	NA	False	NA	NA	NA	36671753	36681678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_36673619_36679828
PB_novel_14542_0	chr15	+	5193	1	Intergenic	novelGene_2548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	36785208	36790401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_36785200_36790400
PB_novel_14546_0	chr15	-	3472	1	Intergenic	novelGene_2549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36982060	36978588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_36978600_36982100
PB_novel_14548_0	chr15	+	189	1	Intergenic	novelGene_2550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATATATATAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	37001858	37002047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_37001900_37002000
PB_novel_14552_1	chr15	+	168	1	Intergenic	novelGene_2551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37021646	37021814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_37021600_37021800
PB_novel_14563_0	chr15	-	200	1	Intergenic	novelGene_2552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTTAAAAAAAGAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	37106163	37105963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_37106000_37106200
PB_novel_14568_0	chr15	-	176	1	Intergenic	novelGene_2553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAGAGAGACTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	37246961	37246785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_37246800_37247000
PB_novel_14571_0	chr15	-	173	1	Intergenic	novelGene_2554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37282855	37282682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_37282700_37282900
PB_novel_14575_0	chr15	+	163	1	Intergenic	novelGene_2555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	38039704	38039867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_38039700_38039900
PB_novel_14579_0	chr15	+	4079	1	Intergenic	novelGene_2556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	38068571	38072650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_38068600_38072600
PB_novel_14581_0	chr15	-	1993	1	NIC	ENSMUSG00000037487.8	novel	9242	59	NA	NA	30	-67407	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38079068	38077075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_38077100_38079100
PB_novel_14582_0	chr15	+	4300	1	FSM	ENSMUSG00000115771.2	ENSMUST00000228698.2	462	1	-37	-3801	-37	3801	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACCCTGTCTCAAAAAA	199	False	NA	NA	False	NA	NA	NA	38079308	38083608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_38079300_38083600
PB_novel_14584_0	chr15	+	168	1	Intergenic	novelGene_2557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAACAAAAAAAAA	6216	False	NA	NA	False	NA	NA	NA	38094201	38094369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_38094200_38094400
PB_novel_14592_0	chr15	-	158	1	Intergenic	novelGene_2558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATC	7477	False	NA	NA	False	NA	NA	NA	38247825	38247667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_38247700_38247800
PB_novel_14604_0	chr15	-	172	1	Intergenic	novelGene_2559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAATAAAAAAAAAAA	3896	False	NA	NA	False	NA	NA	NA	38705898	38705726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_38705700_38705900
PB_novel_14606_2	chr15	+	177	1	Intergenic	novelGene_2560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	284	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGTGTGA	NA	False	NA	NA	False	NA	NA	NA	39045856	39046033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_39045900_39046000
PB_novel_14613_0	chr15	-	176	1	Intergenic	novelGene_2561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	39162775	39162599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_39162600_39162800
PB_novel_14624_0	chr15	-	175	1	Intergenic	novelGene_2562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGACCAACT	NA	False	NA	NA	False	NA	NA	NA	40708351	40708176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_40708200_40708400
PB_novel_14626_0	chr15	+	167	1	Intergenic	novelGene_2563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	40949921	40950088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_40949900_40950100
PB_novel_14629_0	chr15	-	177	1	Intergenic	novelGene_2564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	205	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGTGTGCA	NA	False	NA	NA	False	NA	NA	NA	41054257	41054080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_41054100_41054300
PB_novel_14639_0	chr15	+	175	1	Intergenic	novelGene_2565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAACTTCA	7769	False	NA	NA	False	NA	NA	NA	41455298	41455473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_41455300_41455500
PB_novel_14640_0	chr15	+	177	1	Intergenic	novelGene_2566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	41645410	41645587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_41645400_41645600
PB_novel_14643_0	chr15	+	205	1	Intergenic	novelGene_2567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	387	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAATACA	NA	False	NA	NA	False	NA	NA	NA	41810479	41810684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_41810500_41810700
PB_novel_14644_0	chr15	-	173	1	Intergenic	novelGene_2568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAGTAGTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	41855344	41855171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_41855200_41855300
PB_novel_14663_0	chr15	+	173	1	Intergenic	novelGene_2569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAATTAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	45515050	45515223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_45515000_45515200
PB_novel_14675_0	chr15	+	176	1	Intergenic	novelGene_2570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50413668	50413844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_50413700_50413800
PB_novel_14680_0	chr15	+	3777	1	Intergenic	novelGene_2571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGACAAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	50655025	50658802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_50655000_50658800
PB_novel_14683_0	chr15	-	3345	1	Genic_Genomic	ENSMUSG00000038679.17	novel	NA	NA	NA	NA	-683	-33969	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACGCAAAAAAAAAAAAA	5442	False	NA	NA	False	TATAAA	-31	NA	50746885	50743540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_50743500_50746900
PB_novel_14688_0	chr15	-	176	1	Intergenic	novelGene_2572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACCAAAAAAACCTTAAATAA	NA	False	NA	NA	False	NA	NA	NA	51602739	51602563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_51602600_51602700
PB_novel_14690_0	chr15	+	362	1	Intergenic	novelGene_2573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51703660	51704022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_51703700_51704000
PB_novel_14706_0	chr15	+	164	1	Intergenic	novelGene_2574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52938949	52939113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_52938900_52939100
PB_novel_14707_0	chr15	+	178	1	Intergenic	novelGene_2575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52985800	52985978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_52985800_52986000
PB_novel_14713_0	chr15	-	162	1	Intergenic	novelGene_2576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54685827	54685665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_54685700_54685800
PB_novel_14717_0	chr15	+	161	1	Intergenic	novelGene_2577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTAAAAAATTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	54992749	54992910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_54992700_54992900
PB_novel_14721_0	chr15	-	171	1	Intergenic	novelGene_2578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	55032073	55031902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_55031900_55032100
PB_novel_14724_0	chr15	+	176	1	Intergenic	novelGene_2579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55112182	55112358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_55112200_55112400
PB_novel_14749_0	chr15	+	176	1	Intergenic	novelGene_2580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57772552	57772728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_57772600_57772700
PB_novel_14750_1	chr15	+	156	2	Antisense	novelGene_ENSMUSG00000022360.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATTAATTATTA	NA	False	NA	NA	False	NA	NA	NA	57954926	57986886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_57955039_57986842
PB_novel_14750_5	chr15	+	177	1	Intergenic	novelGene_2581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	367	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57954925	57955102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_57954900_57955100
PB_novel_14772_0	chr15	-	211	1	Intergenic	novelGene_2582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	58002614	58002403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_58002400_58002600
PB_novel_14775_0	chr15	-	180	1	Intergenic	novelGene_2583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAGACATTTATT	7116	False	NA	NA	False	NA	NA	NA	58027226	58027046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_58027000_58027200
PB_novel_14776_1	chr15	-	168	1	Intergenic	novelGene_2584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	58035337	58035169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_58035200_58035300
PB_novel_14778_1	chr15	+	177	1	Intergenic	novelGene_2585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	58244917	58245094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_58244900_58245100
PB_novel_14786_0	chr15	-	121	1	Intergenic	novelGene_2586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTCTAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	58728094	58727973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_58728000_58728100
PB_novel_14787_0	chr15	-	174	1	Intergenic	novelGene_2587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGGAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	58737503	58737329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_58737300_58737500
PB_novel_14789_0	chr15	-	157	1	Intergenic	novelGene_2588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAGAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	58752958	58752801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_58752800_58753000
PB_novel_14796_0	chr15	+	670	1	Intergenic	novelGene_2589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	208	False	NA	NA	False	NA	NA	NA	58899783	58900453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_58899800_58900500
PB_novel_14800_0	chr15	-	168	1	Intergenic	novelGene_2590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAATAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	59116145	59115977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_59116000_59116100
PB_novel_14818_0	chr15	-	169	1	Intergenic	novelGene_2591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	59542328	59542159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_59542200_59542300
PB_novel_14819_0	chr15	-	166	1	Intergenic	novelGene_2592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAATAAATATTTTTT	NA	False	NA	NA	False	NA	NA	NA	59740669	59740503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_59740500_59740700
PB_novel_14826_0	chr15	+	172	1	Intergenic	novelGene_2593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61892621	61892793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_61892600_61892800
PB_novel_14827_0	chr15	-	1004	1	Intergenic	novelGene_2594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGTCCAATACT	NA	False	NA	NA	False	NA	NA	NA	61926354	61925350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_61925400_61926400
PB_novel_14829_0	chr15	-	3175	1	Intergenic	novelGene_2595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61935804	61932629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_61932600_61935800
PB_novel_14837_0	chr15	+	2352	1	Intergenic	novelGene_2596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63928497	63930849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_63928500_63930800
PB_novel_14843_0	chr15	+	1895	1	Intergenic	novelGene_2597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGTAAAAAAAAAAAAAAAAA	2124	False	NA	NA	False	GGGGCT	-40	NA	64026214	64028109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_64026200_64028100
PB_novel_14845_0	chr15	+	5171	1	Intergenic	novelGene_2598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-14	NA	64125019	64130190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_64125000_64130200
PB_novel_14855_0	chr15	-	176	1	Intergenic	novelGene_2599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	65806025	65805849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_65805800_65806000
PB_novel_14866_0	chr15	-	2191	1	Intergenic	novelGene_2600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	68217832	68215641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_68215600_68217800
PB_novel_14867_0	chr15	-	177	1	Intergenic	novelGene_2601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	68862558	68862381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_68862400_68862600
PB_novel_14868_0	chr15	-	176	1	Intergenic	novelGene_2602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGACACTA	NA	False	NA	NA	False	NA	NA	NA	70004207	70004031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_70004000_70004200
PB_novel_14871_0	chr15	+	169	1	Intergenic	novelGene_2603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTAAAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	70640249	70640418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_70640200_70640400
PB_novel_14873_0	chr15	-	169	1	Intergenic	novelGene_2604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATATTAAAAAAAAGATGA	NA	False	NA	NA	False	NA	NA	NA	70822035	70821866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_70821900_70822000
PB_novel_14875_0	chr15	+	156	1	Intergenic	novelGene_2605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	71516301	71516457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_71516300_71516500
PB_novel_14876_0	chr15	+	261	1	Intergenic	novelGene_2606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAGAAAGAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	71667334	71667595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_71667300_71667600
PB_novel_14881_0	chr15	+	177	1	Intergenic	novelGene_2607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	72725078	72725255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_72725100_72725300
PB_novel_14891_0	chr15	+	176	1	Intergenic	novelGene_2608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATAAAGTGG	NA	False	NA	NA	False	NA	NA	NA	72949435	72949611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_72949400_72949600
PB_novel_14909_0	chr15	+	173	1	Intergenic	novelGene_2609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73259327	73259500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_73259300_73259500
PB_novel_14916_0	chr15	+	176	1	Intergenic	novelGene_2610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGACATTAG	NA	False	NA	NA	False	NA	NA	NA	73310622	73310798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_73310600_73310800
PB_novel_14921_0	chr15	-	170	1	Intergenic	novelGene_2611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTTCCCAA	NA	False	NA	NA	False	NA	NA	NA	73335723	73335553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_73335600_73335700
PB_novel_14924_0	chr15	-	177	1	Intergenic	novelGene_2612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAATTAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	73392281	73392104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_73392100_73392300
PB_novel_14925_0	chr15	-	202	1	Intergenic	novelGene_2613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATT	NA	False	NA	NA	False	AAAACA	-7	NA	73520239	73520037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_73520000_73520200
PB_novel_14957_0	chr15	+	180	1	Intergenic	novelGene_2614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	75714806	75714986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_75714800_75715000
PB_novel_14960_2	chr15	+	178	1	Intergenic	novelGene_2615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	354	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	75722444	75722622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_75722400_75722600
PB_novel_14965_0	chr15	-	1418	5	Intergenic	novelGene_2618	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_3	26.2916336502698	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGAAGGG	NA	False	NA	NA	False	NA	NA	NA	75754362	75741196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_75741955_75743124_75743208_75744217_75744419_75748129_75748389_75754245
PB_novel_14965_3	chr15	-	1160	4	Intergenic	novelGene_2617	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	55	junction_3	10.1434160364686	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAAGGGT	NA	False	NA	NA	False	NA	NA	NA	75754362	75741195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_75741955_75743124_75743208_75744217_75744419_75754245
PB_novel_14967_0	chr15	-	176	1	Intergenic	novelGene_2616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAAGGGT	6949	False	NA	NA	False	NA	NA	NA	75741371	75741195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_75741200_75741400
PB_novel_14968_0	chr15	+	173	1	Intergenic	novelGene_2619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	75742656	75742829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_75742700_75742800
PB_novel_14976_0	chr15	-	174	1	Intergenic	novelGene_2620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATC	NA	False	NA	NA	False	NA	NA	NA	75817848	75817674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_75817700_75817800
PB_novel_14979_0	chr15	+	169	1	Intergenic	novelGene_2621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTTTAAAAAATTATT	NA	False	NA	NA	False	NA	NA	NA	75858425	75858594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_75858400_75858600
PB_novel_14986_0	chr15	-	177	1	Intergenic	novelGene_2622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATAGTAAAAGT	NA	False	NA	NA	False	NA	NA	NA	76107664	76107487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_76107500_76107700
PB_novel_14990_0	chr15	-	176	1	Intergenic	novelGene_2623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATATATTTTAAAAAA	9517	False	NA	NA	False	NA	NA	NA	76199574	76199398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_76199400_76199600
PB_novel_14991_0	chr15	-	177	1	Intergenic	novelGene_2624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATGTAAATCTTGAAAAAA	8593	False	NA	NA	False	NA	NA	NA	76200498	76200321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_76200300_76200500
PB_novel_14994_0	chr15	-	2909	1	Antisense	novelGene_ENSMUSG00000034259.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76215363	76212454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_76212500_76215400
PB_novel_15000_0	chr15	-	164	1	Intergenic	novelGene_2625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATGAAAAAAAAAAAAAAA	4935	False	NA	NA	False	NA	NA	NA	76268963	76268799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_76268800_76269000
PB_novel_15010_0	chr15	+	171	1	Intergenic	novelGene_2626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	76451603	76451774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_76451600_76451800
PB_novel_15015_0	chr15	-	145	1	Intergenic	novelGene_2627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	8476	False	NA	NA	False	NA	NA	NA	76503796	76503651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_76503700_76503800
PB_novel_15018_0	chr15	-	172	1	Intergenic	novelGene_2628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAATTTAA	NA	False	NA	NA	False	NA	NA	NA	76550069	76549897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_76549900_76550100
PB_novel_15021_0	chr15	-	177	1	Intergenic	novelGene_2632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGTTATCAA	3332	False	NA	NA	False	NA	NA	NA	76636593	76636416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_76636400_76636600
PB_novel_15024_1	chr15	-	177	1	Intergenic	novelGene_2629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACTAACT	NA	False	NA	NA	False	NA	NA	NA	76560953	76560776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_76560800_76561000
PB_novel_15027_0	chr15	+	185	1	Intergenic	novelGene_2630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76592079	76592264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_76592100_76592300
PB_novel_15028_0	chr15	-	3049	1	Genic_Genomic	ENSMUSG00000033707.10	novel	NA	NA	NA	NA	3085	2993	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCCAAAAAAAAAAAAAAAA	8049	False	NA	NA	False	NA	NA	NA	76599531	76596482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_76596500_76599500
PB_novel_15029_0	chr15	+	177	1	Intergenic	novelGene_2631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATATTTAACTA	2557	False	NA	NA	False	NA	NA	NA	76628776	76628953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_76628800_76629000
PB_novel_15030_0	chr15	+	2691	1	Intergenic	novelGene_2633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCAAAAAAAAGAAA	146	False	NA	NA	False	NA	NA	NA	76690743	76693434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_76690700_76693400
PB_novel_15043_0	chr15	+	177	1	Intergenic	novelGene_2635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTCAG	NA	False	NA	NA	False	NA	NA	NA	76804334	76804511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_76804300_76804500
PB_novel_15047_0	chr15	+	159	1	Intergenic	novelGene_2636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAATCTTTAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	76814357	76814516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_76814400_76814500
PB_novel_15048_0	chr15	-	174	1	Intergenic	novelGene_2637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATCCATCTGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	76827884	76827710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_76827700_76827900
PB_novel_15055_0	chr15	+	187	1	Intergenic	novelGene_2638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAATATTTAAGC	NA	False	NA	NA	False	NA	NA	NA	77116850	77117037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_77116800_77117000
PB_novel_15061_0	chr15	+	172	1	Intergenic	novelGene_2639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77219327	77219499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_77219300_77219500
PB_novel_15062_0	chr15	+	169	1	Intergenic	novelGene_2640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAGAAGCAAATAT	NA	False	NA	NA	False	NA	NA	NA	77225177	77225346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_77225200_77225300
PB_novel_15064_0	chr15	-	177	1	Intergenic	novelGene_2641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACGA	NA	False	NA	NA	False	NA	NA	NA	77231169	77230992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_77231000_77231200
PB_novel_15070_0	chr15	-	153	1	Intergenic	novelGene_2642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATACAATGAATAAGTAAAT	727	False	NA	NA	False	NA	NA	NA	77366418	77366265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_77366300_77366400
PB_novel_15071_0	chr15	+	176	1	Intergenic	novelGene_2643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	281	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCTTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77717121	77717297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_77717100_77717300
PB_novel_15072_0	chr15	+	176	1	Intergenic	novelGene_2644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	77728069	77728245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_77728100_77728200
PB_novel_15075_0	chr15	+	175	1	Intergenic	novelGene_2645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAGATTTAAAAAA	4475	False	NA	NA	False	NA	NA	NA	77738107	77738282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_77738100_77738300
PB_novel_15077_0	chr15	-	175	1	Intergenic	novelGene_2646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAACA	8574	False	77755273	NA	False	NA	NA	NA	77755263	77755088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_77755100_77755300
PB_novel_15079_0	chr15	+	175	1	Intergenic	novelGene_2647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77769969	77770144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_77770000_77770100
PB_novel_15081_0	chr15	+	180	1	Intergenic	novelGene_2648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAATACAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77793994	77794174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_77794000_77794200
PB_novel_15086_2	chr15	-	169	2	Antisense	novelGene_ENSMUSG00000070235.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTAAAAAAAATAAGGGC	NA	False	NA	NA	False	NA	NA	NA	78260718	78211534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_78211544_78260558
PB_novel_15086_3	chr15	-	175	1	Intergenic	novelGene_2649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTTTATTA	NA	False	NA	NA	False	NA	NA	NA	78260719	78260544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_78260500_78260700
PB_novel_15094_0	chr15	-	178	1	Intergenic	novelGene_2650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAACATAAGT	4888	False	NA	NA	False	NA	NA	NA	78705912	78705734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_78705700_78705900
PB_novel_15103_1	chr15	-	177	1	Intergenic	novelGene_2651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	344	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATAAACAAAAT	7095	False	NA	NA	False	NA	NA	NA	78848623	78848446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_78848400_78848600
PB_novel_15111_0	chr15	-	357	1	Intergenic	novelGene_2652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAGAAATGGCCAGG	1059	False	NA	NA	False	NA	NA	NA	78928682	78928325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_78928300_78928700
PB_novel_15113_0	chr15	-	173	1	Intergenic	novelGene_2653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	78933382	78933209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_78933200_78933400
PB_novel_15114_0	chr15	-	179	1	Intergenic	novelGene_2654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	78955816	78955637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_78955600_78955800
PB_novel_15116_0	chr15	-	179	1	Intergenic	novelGene_2655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTAAAAAAAAAATAAGTA	NA	False	NA	NA	False	NA	NA	NA	78969199	78969020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_78969000_78969200
PB_novel_15121_0	chr15	-	173	1	Intergenic	novelGene_2656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGGAAAAAGAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	79073245	79073072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_79073100_79073200
PB_novel_15126_1	chr15	-	178	1	Intergenic	novelGene_2657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79214269	79214091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_79214100_79214300
PB_novel_15135_0	chr15	-	686	1	Intergenic	novelGene_2658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAACCAAAAAAAAAAA	8403	False	NA	NA	False	NA	NA	NA	79406332	79405646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_79405600_79406300
PB_novel_15136_0	chr15	-	3607	1	NIC	ENSMUSG00000055065.8	novel	4732	13	NA	NA	7	-8281	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79430749	79427142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_79427100_79430700
PB_novel_15137_0	chr15	+	180	1	Intergenic	novelGene_2659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	4274	False	NA	NA	False	NA	NA	NA	79433257	79433437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_79433300_79433400
PB_novel_15140_0	chr15	+	160	1	Intergenic	novelGene_2660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	79480202	79480362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_79480200_79480400
PB_novel_15142_0	chr15	+	181	1	Intergenic	novelGene_2661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAGAAATTAA	NA	False	NA	NA	False	NA	NA	NA	79491105	79491286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_79491100_79491300
PB_novel_15143_0	chr15	+	175	1	Intergenic	novelGene_2662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79498158	79498333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_79498200_79498300
PB_novel_15147_0	chr15	+	502	1	Intergenic	novelGene_2663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGTCTCGAAAAAAACAAAC	8060	False	NA	NA	False	NA	NA	NA	79541900	79542402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_79541900_79542400
PB_novel_15150_0	chr15	+	111	1	Intergenic	novelGene_2664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	79580163	79580274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_79580200_79580300
PB_novel_15153_0	chr15	-	134	1	Intergenic	novelGene_2665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAGAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	79634508	79634374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_79634400_79634500
PB_novel_15156_0	chr15	+	179	1	Intergenic	novelGene_2666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTTTAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	79727077	79727256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_79727100_79727300
PB_novel_15158_0	chr15	+	168	1	Intergenic	novelGene_2667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	3239	False	NA	NA	False	NA	NA	NA	79742874	79743042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_79742900_79743000
PB_novel_15162_0	chr15	-	164	1	Intergenic	novelGene_2668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	8287	False	NA	NA	False	NA	NA	NA	79778594	79778430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_79778400_79778600
PB_novel_15166_1	chr15	+	175	1	Intergenic	novelGene_2672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80005071	80005246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_80005100_80005200
PB_novel_15167_0	chr15	+	173	1	Intergenic	novelGene_2669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGGCATGT	NA	False	NA	NA	False	NA	NA	NA	79807120	79807293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_79807100_79807300
PB_novel_15168_0	chr15	+	3890	1	Intergenic	novelGene_2670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAATAAAATTAAA	NA	False	NA	NA	False	NA	NA	NA	79810493	79814383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_79810500_79814400
PB_novel_15172_0	chr15	-	5180	1	Genic_Genomic	ENSMUSG00000053411.17	novel	NA	NA	NA	NA	-5	-35397	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTCTTGAAAAACCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79855325	79850145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_79850100_79855300
PB_novel_15175_0	chr15	-	174	1	Intergenic	novelGene_2671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAACCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79874152	79873978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_79874000_79874200
PB_novel_15185_1	chr15	+	173	1	Intergenic	novelGene_2676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATACAATAGT	NA	False	NA	NA	False	NA	NA	NA	80081214	80081387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_80081200_80081400
PB_novel_15192_0	chr15	-	175	1	Intergenic	novelGene_2673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80036160	80035985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_80036000_80036200
PB_novel_15195_0	chr15	-	175	1	Intergenic	novelGene_2674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	80053200	80053025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_80053000_80053200
PB_novel_15196_0	chr15	-	176	1	Intergenic	novelGene_2675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTACTTGAT	NA	False	NA	NA	False	NA	NA	NA	80062916	80062740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_80062700_80062900
PB_novel_15197_0	chr15	-	208	1	Intergenic	novelGene_2677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAAAAGAGCTCCAG	9374	False	NA	NA	False	NA	NA	NA	80089556	80089348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_80089300_80089600
PB_novel_15198_0	chr15	+	171	1	Intergenic	novelGene_2678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACCAA	3799	False	NA	NA	False	NA	NA	NA	80114264	80114435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_80114300_80114400
PB_novel_15209_0	chr15	+	180	1	Intergenic	novelGene_2679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACTTC	9824	False	NA	NA	False	NA	NA	NA	80588203	80588383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_80588200_80588400
PB_novel_15210_0	chr15	-	174	1	Intergenic	novelGene_2680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	80716112	80715938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_80715900_80716100
PB_novel_15212_0	chr15	+	195	1	Intergenic	novelGene_2681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAGAAAACCTAGGAA	NA	False	NA	NA	False	NA	NA	NA	80754626	80754821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_80754600_80754800
PB_novel_15225_0	chr15	+	179	1	Intergenic	novelGene_2682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTGTATATAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	80875603	80875782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_80875600_80875800
PB_novel_15227_0	chr15	+	177	1	Intergenic	novelGene_2683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	80878770	80878947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_80878800_80878900
PB_novel_15228_0	chr15	+	172	1	Intergenic	novelGene_2684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATATCTTCG	NA	False	NA	NA	False	NA	NA	NA	80886527	80886699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_80886500_80886700
PB_novel_15230_1	chr15	-	177	2	Intergenic	novelGene_2691	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAATAAATCTTTAA	NA	False	NA	NA	False	NA	NA	NA	81093860	81078545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81078705_81093842
PB_novel_15230_3	chr15	-	194	1	Intergenic	novelGene_2690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAGAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	81078722	81078528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81078500_81078700
PB_novel_15231_1	chr15	+	184	1	Intergenic	novelGene_2685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATCTTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80921342	80921526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_80921300_80921500
PB_novel_15232_0	chr15	-	131	1	Intergenic	novelGene_2686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80924357	80924226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_80924200_80924400
PB_novel_15234_0	chr15	+	176	1	Intergenic	novelGene_2687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAATCTTAAATCTTAA	3164	False	NA	NA	False	NA	NA	NA	80951680	80951856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_80951700_80951900
PB_novel_15235_1	chr15	-	168	1	Intergenic	novelGene_2688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTTAAAAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	80994245	80994077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_80994100_80994200
PB_novel_15238_0	chr15	+	171	1	Intergenic	novelGene_2689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	81056170	81056341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_81056200_81056300
PB_novel_15242_0	chr15	+	193	1	Intergenic	novelGene_2692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CACTTGAAAAAAAAAAAAAA	7494	False	NA	NA	False	NA	NA	NA	81197994	81198187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_81198000_81198200
PB_novel_15251_0	chr15	+	161	1	Antisense	novelGene_ENSMUSG00000022403.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	9194	False	NA	NA	False	NA	NA	NA	81268462	81268623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_81268500_81268600
PB_novel_15252_0	chr15	+	177	1	Intergenic	novelGene_2693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTTGTATT	NA	False	NA	NA	False	NA	NA	NA	81287282	81287459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_81287300_81287500
PB_novel_15256_0	chr15	-	177	1	Intergenic	novelGene_2694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGTGCAGTA	NA	False	NA	NA	False	NA	NA	NA	81330930	81330753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81330800_81330900
PB_novel_15258_0	chr15	-	171	1	Intergenic	novelGene_2696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAAAAAACAA	7233	False	NA	NA	False	NA	NA	NA	81367651	81367480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81367500_81367700
PB_novel_15260_0	chr15	+	176	1	Intergenic	novelGene_2695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGGAAGAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	81343614	81343790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_81343600_81343800
PB_novel_15264_0	chr15	+	145	1	Intergenic	novelGene_2697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAGAGAGAGAAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	81374831	81374976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_81374800_81375000
PB_novel_15265_0	chr15	-	181	1	Intergenic	novelGene_2698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTATTTTAAAAAACGAAACA	5107	False	NA	NA	False	NA	NA	NA	81375629	81375448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81375400_81375600
PB_novel_15267_0	chr15	+	176	1	Intergenic	novelGene_2699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGCCCCATTA	NA	False	NA	NA	False	NA	NA	NA	81430206	81430382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_81430200_81430400
PB_novel_15275_0	chr15	-	177	1	Intergenic	novelGene_2701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81555077	81554900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81554900_81555100
PB_novel_15278_0	chr15	-	176	1	Intergenic	novelGene_2700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81551105	81550929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81550900_81551100
PB_novel_15283_0	chr15	+	1060	1	Antisense	novelGene_ENSMUSG00000022391.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCTAAAAAAAAAAA	1003	False	NA	NA	False	NA	NA	NA	81589957	81591017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_81590000_81591000
PB_novel_15284_0	chr15	-	149	1	Intergenic	novelGene_2702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAAAAATTTC	NA	False	NA	NA	False	NA	NA	NA	81593344	81593195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81593200_81593300
PB_novel_15285_0	chr15	+	175	1	Intergenic	novelGene_2703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8248	False	NA	NA	False	NA	NA	NA	81597202	81597377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_81597200_81597400
PB_novel_15286_0	chr15	-	178	1	Intergenic	novelGene_2704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAACAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	81609987	81609809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81609800_81610000
PB_novel_15288_0	chr15	-	175	1	Intergenic	novelGene_2705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81627026	81626851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81626900_81627000
PB_novel_15289_0	chr15	-	173	2	Antisense	novelGene_ENSMUSG00000022390.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81635690	81626855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_81626864_81635525
PB_novel_15292_0	chr15	-	168	1	Intergenic	novelGene_2706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	81655680	81655512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81655500_81655700
PB_novel_15296_0	chr15	-	176	1	Intergenic	novelGene_2707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	81771510	81771334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81771300_81771500
PB_novel_15297_0	chr15	-	173	1	Intergenic	novelGene_2708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81778052	81777879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81777900_81778100
PB_novel_15298_0	chr15	-	895	1	Antisense	novelGene_ENSMUSG00000022477.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-10	NA	81780017	81779122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_81779100_81780000
PB_novel_15302_0	chr15	+	184	1	Intergenic	novelGene_2709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAAGAGATTTAA	6598	False	NA	NA	False	NA	NA	NA	81842491	81842675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_81842500_81842700
PB_novel_15303_0	chr15	+	304	1	Intergenic	novelGene_2710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	81849648	81849952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_81849600_81850000
PB_novel_15309_0	chr15	-	171	1	Intergenic	novelGene_2711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	5569	False	NA	NA	False	NA	NA	NA	81866330	81866159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81866200_81866300
PB_novel_15311_0	chr15	-	177	1	Intergenic	novelGene_2712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAGAGAGAGAGAAAC	NA	False	NA	NA	False	NA	NA	NA	81891012	81890835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81890800_81891000
PB_novel_15313_0	chr15	-	585	1	Antisense	novelGene_ENSMUSG00000022471.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAGAAAGACAAAAAAAA	6697	False	NA	NA	False	NA	NA	NA	81913306	81912721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_81912700_81913300
PB_novel_15315_0	chr15	+	176	1	Intergenic	novelGene_2713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	81962485	81962661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_81962500_81962700
PB_novel_15316_0	chr15	-	170	1	Intergenic	novelGene_2714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAGTATGAAACA	6386	False	NA	NA	False	NA	NA	NA	81962956	81962786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_81962800_81963000
PB_novel_15319_0	chr15	+	3064	1	NIC	ENSMUSG00000022463.9	novel	5077	19	NA	NA	16	-19831	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATAGAAT	2259	False	NA	NA	False	NA	NA	NA	82031467	82034531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_82031500_82034500
PB_novel_15322_0	chr15	+	3481	1	NIC	ENSMUSG00000022463.9	novel	5077	19	NA	NA	-2576	-7943	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	6520	False	NA	NA	False	NA	NA	NA	82076596	82080077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_82076600_82080100
PB_novel_15339_0	chr15	-	177	1	Intergenic	novelGene_2715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	257	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATAGTGTCC	NA	False	NA	NA	False	NA	NA	NA	82474619	82474442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_82474400_82474600
PB_novel_15342_0	chr15	+	175	1	Intergenic	novelGene_2716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATAACTTA	NA	False	NA	NA	False	NA	NA	NA	82719236	82719411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_82719200_82719400
PB_novel_15344_0	chr15	-	3150	1	Intergenic	novelGene_2717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGCAAAAAAAAAAACAACA	NA	False	NA	NA	False	AATAGA	-41	NA	82747713	82744563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_82744600_82747700
PB_novel_15348_0	chr15	+	186	1	Intergenic	novelGene_2718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	82763265	82763451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_82763300_82763500
PB_novel_15349_1	chr15	+	175	1	Intergenic	novelGene_2719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	496	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	874	False	NA	NA	False	NA	NA	NA	82899945	82900120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_82899900_82900100
PB_novel_15350_0	chr15	+	175	1	Intergenic	novelGene_2720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGAACTG	NA	False	NA	NA	False	NA	NA	NA	82957195	82957370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_82957200_82957400
PB_novel_15352_0	chr15	-	176	1	Intergenic	novelGene_2721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAACAAA	6807	False	NA	NA	False	NA	NA	NA	82981076	82980900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_82980900_82981100
PB_novel_15355_0	chr15	+	171	1	Intergenic	novelGene_2722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83009549	83009720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_83009500_83009700
PB_novel_15357_1	chr15	+	175	1	Intergenic	novelGene_2723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTAT	1263	False	NA	NA	False	NA	NA	NA	83034706	83034881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_83034700_83034900
PB_novel_15366_0	chr15	+	172	1	Intergenic	novelGene_2724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	5581	False	NA	NA	False	NA	NA	NA	83127818	83127990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_83127800_83128000
PB_novel_15367_0	chr15	+	174	1	Intergenic	novelGene_2725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	83133365	83133539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_83133400_83133500
PB_novel_15370_0	chr15	-	176	1	Intergenic	novelGene_2726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	83210639	83210463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_83210500_83210600
PB_novel_15382_0	chr15	+	3660	1	NIC	ENSMUSG00000041736.8	novel	837	4	NA	NA	5629	838	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACAACAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	83453704	83457364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_83453700_83457400
PB_novel_15383_0	chr15	-	182	1	Intergenic	novelGene_2727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTTAAAAAAAAACCAAAA	1788	False	NA	NA	False	NA	NA	NA	83472308	83472126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_83472100_83472300
PB_novel_15385_0	chr15	-	179	1	Intergenic	novelGene_2728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAGAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	83520234	83520055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_83520100_83520200
PB_novel_15397_0	chr15	-	150	1	Intergenic	novelGene_2729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATGAAACTTAA	4098	False	NA	NA	False	NA	NA	NA	84127972	84127822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_84127800_84128000
PB_novel_15403_0	chr15	-	175	1	Intergenic	novelGene_2730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAGTCTAAAAAAGA	NA	False	NA	-1	True	NA	NA	NA	84413185	84413010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_84413000_84413200
PB_novel_15405_0	chr15	+	153	1	Intergenic	novelGene_2731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAACCCTAAGT	NA	False	NA	NA	False	NA	NA	NA	84519894	84520047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_84519900_84520000
PB_novel_15414_0	chr15	+	169	1	Intergenic	novelGene_2732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATCCAGATGTGAC	NA	False	NA	NA	False	NA	NA	NA	84793103	84793272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_84793100_84793300
PB_novel_15417_0	chr15	-	175	1	Intergenic	novelGene_2733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	84866861	84866686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_84866700_84866900
PB_novel_15419_0	chr15	+	174	1	Intergenic	novelGene_2734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATCT	NA	False	NA	NA	False	NA	NA	NA	84903065	84903239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_84903100_84903200
PB_novel_15432_0	chr15	+	175	1	Intergenic	novelGene_2735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACAACAAAT	NA	False	NA	NA	False	NA	NA	NA	85221777	85221952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_85221800_85222000
PB_novel_15436_0	chr15	-	168	1	Intergenic	novelGene_2736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	85318264	85318096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_85318100_85318300
PB_novel_15442_0	chr15	+	177	1	Intergenic	novelGene_2737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	85491272	85491449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_85491300_85491400
PB_novel_15445_0	chr15	-	172	1	Intergenic	novelGene_2738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	85663136	85662964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_85663000_85663100
PB_novel_15448_0	chr15	+	156	1	Intergenic	novelGene_2739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	9357	False	NA	NA	False	NA	NA	NA	85733194	85733350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_85733200_85733400
PB_novel_15462_0	chr15	-	170	1	Intergenic	novelGene_2740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAATAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	86078648	86078478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_86078500_86078600
PB_novel_15467_0	chr15	+	4374	1	Intergenic	novelGene_2741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86304517	86308891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_86304500_86308900
PB_novel_15475_0	chr15	+	175	1	Intergenic	novelGene_2742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAACAATAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	88265369	88265544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_88265400_88265500
PB_novel_15479_0	chr15	+	162	1	Intergenic	novelGene_2743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAAAATAGTGAAT	NA	False	NA	NA	False	NA	NA	NA	88524780	88524942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_88524800_88524900
PB_novel_15482_1	chr15	+	2761	1	Antisense	novelGene_ENSMUSG00000022387.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88571969	88574730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_88572000_88574700
PB_novel_15484_0	chr15	-	981	1	Intergenic	novelGene_2744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGGAAAGTAATAATGA	4119	False	NA	2	True	AATAAA	-23	NA	88596090	88595109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_88595100_88596100
PB_novel_15498_0	chr15	-	181	1	Intergenic	novelGene_2745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAAAGAAAGCT	NA	False	NA	NA	False	NA	NA	NA	88756901	88756720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_88756700_88756900
PB_novel_15513_0	chr15	-	2895	1	Genic_Genomic	ENSMUSG00000036529.18	novel	NA	NA	NA	NA	-492	1679	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGTGCAAAAAAAAAAAAA	7478	False	NA	NA	False	NA	NA	NA	89173654	89170759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_89170800_89173700
PB_novel_15516_0	chr15	+	1922	1	NIC	ENSMUSG00000008690.16	novel	3223	20	NA	NA	6	-6190	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89239971	89241893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_89240000_89241900
PB_novel_15517_0	chr15	-	175	1	Intergenic	novelGene_2746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAATACATGTTCA	NA	False	NA	NA	False	NA	NA	NA	89242401	89242226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_89242200_89242400
PB_novel_15522_0	chr15	-	173	1	Intergenic	novelGene_2747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAGAAAGAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	89281995	89281822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_89281800_89282000
PB_novel_15525_0	chr15	-	165	1	Intergenic	novelGene_2748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	89299337	89299172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_89299200_89299300
PB_novel_15526_0	chr15	+	184	1	Intergenic	novelGene_2749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	89300180	89300364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_89300200_89300400
PB_novel_15527_0	chr15	+	175	1	Intergenic	novelGene_2750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89318184	89318359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_89318200_89318400
PB_novel_15528_0	chr15	-	175	1	Intergenic	novelGene_2751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAGAAAGTAGAA	5882	False	NA	NA	False	NA	NA	NA	89410779	89410604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_89410600_89410800
PB_novel_15537_0	chr15	+	164	1	Intergenic	novelGene_2752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATAAATAAAATCT	NA	False	NA	NA	False	NA	NA	NA	90198819	90198983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_90198800_90199000
PB_novel_15549_0	chr15	+	176	1	Intergenic	novelGene_2753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92836994	92837170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_92837000_92837200
PB_novel_15553_0	chr15	+	171	1	Intergenic	novelGene_2754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93144403	93144574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_93144400_93144600
PB_novel_15572_0	chr15	-	161	1	Intergenic	novelGene_2755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93504817	93504656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_93504700_93504800
PB_novel_15573_0	chr15	-	325	1	Intergenic	novelGene_2756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAGGAAATAAAAC	NA	False	NA	-32	True	AAAAAG	-30	NA	93576840	93576515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_93576500_93576800
PB_novel_15581_0	chr15	-	2533	1	Intergenic	novelGene_2757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	94835635	94833102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_94833100_94835600
PB_novel_15588_0	chr15	-	172	1	Intergenic	novelGene_2758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	95705561	95705389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_95705400_95705600
PB_novel_15592_0	chr15	-	181	1	Intergenic	novelGene_2759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95911350	95911169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_95911200_95911400
PB_novel_15596_2	chr15	+	164	1	Intergenic	novelGene_2760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAACCTTTTTAAAAA	7770	False	NA	NA	False	NA	NA	NA	96070985	96071149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_96071000_96071100
PB_novel_15602_0	chr15	+	182	1	Intergenic	novelGene_2761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAAGTTCT	NA	False	NA	NA	False	NA	NA	NA	96203675	96203857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_96203700_96203900
PB_novel_15604_0	chr15	-	203	1	Intergenic	novelGene_2762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	96219214	96219011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_96219000_96219200
PB_novel_15608_0	chr15	+	174	1	Intergenic	novelGene_2763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGGCAACTGA	9795	False	NA	NA	False	NA	NA	NA	96352367	96352541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_96352400_96352500
PB_novel_15611_0	chr15	-	181	1	Intergenic	novelGene_2764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	302	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAGAGAGATAA	NA	False	NA	NA	False	NA	NA	NA	96390972	96390791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_96390800_96391000
PB_novel_15617_0	chr15	+	1076	1	Intergenic	novelGene_2765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	96485102	96486178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_96485100_96486200
PB_novel_15618_0	chr15	+	175	1	Intergenic	novelGene_2766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGAAGAAAGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	96525939	96526114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_96525900_96526100
PB_novel_15631_0	chr15	-	169	1	Intergenic	novelGene_2767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAGTAAAAAAACAATAAAT	NA	False	NA	NA	False	NA	NA	NA	96863138	96862969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_96863000_96863100
PB_novel_15638_1	chr15	+	174	1	Intergenic	novelGene_2768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	812	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGATTTCTT	NA	False	NA	13	True	NA	NA	NA	97024529	97024703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_97024500_97024700
PB_novel_15641_0	chr15	-	3029	1	NIC	ENSMUSG00000116295.2	novel	593	4	NA	NA	3399	138	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97061704	97058675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_97058700_97061700
PB_novel_15650_0	chr15	+	180	1	Intergenic	novelGene_2769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97301290	97301470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_97301300_97301500
PB_novel_15655_0	chr15	+	161	1	Intergenic	novelGene_2770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAGAGAGAGAAGGGG	7271	False	NA	NA	False	NA	NA	NA	97368546	97368707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_97368500_97368700
PB_novel_15659_0	chr15	-	178	1	Intergenic	novelGene_2771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGACTGCC	NA	False	NA	NA	False	NA	NA	NA	97424892	97424714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_97424700_97424900
PB_novel_15662_0	chr15	-	167	1	Intergenic	novelGene_2772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	97552151	97551984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_97552000_97552200
PB_novel_15673_0	chr15	-	3324	1	Genic_Genomic	ENSMUSG00000033075.18	novel	NA	NA	NA	NA	-20	-757	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CATAAAAATAAAAAAATAAG	6441	False	NA	NA	False	NA	NA	NA	97991152	97987828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_97987800_97991200
PB_novel_15674_1	chr15	-	2849	1	Antisense	novelGene_ENSMUSG00000033065.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98017366	98014517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_98014500_98017400
PB_novel_15675_1	chr15	-	177	1	Intergenic	novelGene_2773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	98041676	98041499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_98041500_98041700
PB_novel_15684_0	chr15	+	138	1	Intergenic	novelGene_2774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98432491	98432629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_98432500_98432600
PB_novel_15694_0	chr15	-	174	1	Intergenic	novelGene_2775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATGTTCCCTTTAAA	4985	False	NA	NA	False	NA	NA	NA	98477795	98477621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_98477600_98477800
PB_novel_15698_0	chr15	-	172	1	Intergenic	novelGene_2776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAACAG	9858	False	NA	NA	False	NA	NA	NA	98557911	98557739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_98557700_98557900
PB_novel_15700_1	chr15	+	175	1	Intergenic	novelGene_2777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGGGA	NA	False	NA	NA	False	NA	NA	NA	98558060	98558235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_98558100_98558200
PB_novel_15708_0	chr15	+	168	1	Intergenic	novelGene_2778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAATAAAAATAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	98596854	98597022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_98596900_98597000
PB_novel_15712_0	chr15	+	187	1	Antisense	novelGene_ENSMUSG00000003355.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACAGAAAGAC	NA	False	NA	NA	False	NA	NA	NA	98623787	98623974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_98623800_98624000
PB_novel_15719_12	chr15	+	4294	15	Antisense	novelGene_ENSMUSG00000048154.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98757414	98769064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_98757493_98758511_98758624_98758926_98759050_98759484_98760565_98760656_98762097_98762230_98762373_98762529_98762688_98762814_98762929_98763007_98763175_98763381_98763545_98763669_98763775_98763871_98764103_98764258_98764384_98764552_98764641_98768896
PB_novel_15719_19	chr15	+	2184	11	Antisense	novelGene_ENSMUSG00000048154.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98761369	98769063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_98762097_98762230_98762373_98762529_98762688_98762814_98762929_98763007_98763175_98763381_98763545_98763669_98763775_98763871_98764097_98764255_98764384_98764552_98764641_98768896
PB_novel_15719_25	chr15	+	4290	15	Antisense	novelGene_ENSMUSG00000048154.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98757414	98769063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_98757493_98758511_98758624_98758929_98759050_98759484_98760565_98760656_98762097_98762230_98762373_98762529_98762688_98762814_98762929_98763007_98763175_98763381_98763545_98763669_98763775_98763871_98764103_98764258_98764384_98764552_98764641_98768896
PB_novel_15719_27	chr15	+	2188	11	Antisense	novelGene_ENSMUSG00000048154.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98761369	98769064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_98762097_98762230_98762373_98762529_98762688_98762814_98762929_98763007_98763175_98763381_98763545_98763669_98763775_98763871_98764103_98764258_98764384_98764552_98764641_98768896
PB_novel_15720_0	chr15	-	178	1	Intergenic	novelGene_2779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	98782508	98782330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_98782300_98782500
PB_novel_15723_0	chr15	-	177	1	Intergenic	novelGene_2780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAAATCTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98788400	98788223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_98788200_98788400
PB_novel_15724_4	chr15	+	177	1	Intergenic	novelGene_2783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98901272	98901449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_98901300_98901400
PB_novel_15726_0	chr15	-	171	1	Intergenic	novelGene_2781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9821	False	NA	NA	False	NA	NA	NA	98822284	98822113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_98822100_98822300
PB_novel_15733_0	chr15	-	154	1	Intergenic	novelGene_2782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATTAAAAAAAGAAAGA	7891	False	NA	NA	False	NA	NA	NA	98884299	98884145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_98884100_98884300
PB_novel_15735_0	chr15	-	158	1	Intergenic	novelGene_2784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	98905102	98904944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_98904900_98905100
PB_novel_15745_0	chr15	-	176	1	Intergenic	novelGene_2785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATGTT	9045	False	NA	NA	False	NA	NA	NA	98944648	98944472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_98944500_98944600
PB_novel_15748_0	chr15	+	175	1	Intergenic	novelGene_2786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	98968506	98968681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_98968500_98968700
PB_novel_15750_0	chr15	+	174	1	Intergenic	novelGene_2787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAATAAAATAAAACC	NA	False	NA	NA	False	NA	NA	NA	98971732	98971906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_98971700_98971900
PB_novel_15756_0	chr15	-	159	1	Intergenic	novelGene_2788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	99003862	99003703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_99003700_99003900
PB_novel_15777_0	chr15	+	175	1	Intergenic	novelGene_2789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAGAAAAACAAAAG	NA	False	NA	NA	False	NA	NA	NA	99342394	99342569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99342400_99342600
PB_novel_15788_0	chr15	+	156	1	Intergenic	novelGene_2790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATATTTT	NA	False	NA	NA	False	NA	NA	NA	99557218	99557374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99557200_99557400
PB_novel_15789_0	chr15	+	176	1	Intergenic	novelGene_2791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	99566059	99566235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99566100_99566200
PB_novel_15795_0	chr15	-	177	1	Intergenic	novelGene_2795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAACAGAAAAAT	8564	False	NA	NA	False	NA	NA	NA	99698282	99698105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_99698100_99698300
PB_novel_15798_0	chr15	+	173	1	Intergenic	novelGene_2792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAACCAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	99660160	99660333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99660200_99660300
PB_novel_15801_0	chr15	+	173	1	Intergenic	novelGene_2793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAGAAAA	270	False	NA	NA	False	NA	NA	NA	99671389	99671562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99671400_99671600
PB_novel_15806_0	chr15	+	132	1	Intergenic	novelGene_2794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAAAACAAAAAA	1200	False	NA	NA	False	NA	NA	NA	99693423	99693555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99693400_99693600
PB_novel_15809_0	chr15	-	174	1	Intergenic	novelGene_2796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	99708959	99708785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_99708800_99709000
PB_novel_15810_0	chr15	-	182	1	Intergenic	novelGene_2797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATT	3710	False	NA	NA	False	NA	NA	NA	99720085	99719903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_99719900_99720100
PB_novel_15811_0	chr15	-	182	1	Intergenic	novelGene_2798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	3467	False	NA	NA	False	NA	NA	NA	99720328	99720146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_99720100_99720300
PB_novel_15812_0	chr15	-	156	1	Intergenic	novelGene_2799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAGAAAGAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	99729384	99729228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_99729200_99729400
PB_novel_15815_0	chr15	-	168	1	Intergenic	novelGene_2800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAATCAAA	5421	False	NA	NA	False	NA	NA	NA	99767465	99767297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_99767300_99767500
PB_novel_15816_11	chr15	-	4569	2	Genic_Genomic	ENSMUSG00000023022.15	novel	4243	11	NA	NA	9	-29533	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7287	False	NA	NA	False	NA	NA	NA	99773288	99768641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_-_99772049_99772126
PB_novel_15817_0	chr15	+	187	1	Intergenic	novelGene_2801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAACAAAAAGGCAAGACA	NA	False	NA	NA	False	NA	NA	NA	99770079	99770266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99770100_99770300
PB_novel_15820_0	chr15	+	174	1	Intergenic	novelGene_2802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99804608	99804782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99804600_99804800
PB_novel_15821_0	chr15	-	176	1	Intergenic	novelGene_2803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATTCAATTCCCA	NA	False	NA	NA	False	NA	NA	NA	99827630	99827454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_99827500_99827600
PB_novel_15823_1	chr15	+	3385	1	NIC	ENSMUSG00000023025.17	novel	6530	16	NA	NA	12	-16259	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99870729	99874114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_99870700_99874100
PB_novel_15824_0	chr15	+	178	1	Intergenic	novelGene_2804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAAAAAAT	225	False	NA	NA	False	NA	NA	NA	99875817	99875995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99875800_99876000
PB_novel_15830_0	chr15	+	194	1	Intergenic	novelGene_2805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAATAAATAAATCTTTAA	NA	False	NA	NA	False	NA	NA	NA	99942214	99942408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99942200_99942400
PB_novel_15832_0	chr15	+	176	1	Intergenic	novelGene_2806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGGAAAATGCA	NA	False	NA	NA	False	NA	NA	NA	99947970	99948146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99948000_99948100
PB_novel_15834_0	chr15	+	170	1	Intergenic	novelGene_2807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	99952426	99952596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_99952400_99952600
PB_novel_15837_0	chr15	-	173	1	Intergenic	novelGene_2808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	100046939	100046766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_100046800_100046900
PB_novel_15841_0	chr15	+	178	1	Intergenic	novelGene_2809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAACACCAAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	100094448	100094626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_100094400_100094600
PB_novel_15842_0	chr15	+	176	1	Intergenic	novelGene_2810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	100098548	100098724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_100098500_100098700
PB_novel_15845_0	chr15	-	165	1	Intergenic	novelGene_2812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	548	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAGTATAC	NA	False	NA	NA	False	NA	NA	NA	100254569	100254404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_100254400_100254600
PB_novel_15852_0	chr15	-	172	1	Intergenic	novelGene_2811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100180748	100180576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_100180600_100180700
PB_novel_15869_0	chr15	+	3601	1	NIC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	-280	-194	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	100513534	100517135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_+_100513500_100517100
PB_novel_15871_0	chr15	-	194	1	Intergenic	novelGene_2813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100537641	100537447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_100537400_100537600
PB_novel_15874_0	chr15	+	162	1	Intergenic	novelGene_2814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATAAAATCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	100569082	100569244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_100569100_100569200
PB_novel_15877_0	chr15	+	173	1	Intergenic	novelGene_2815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGAACAAAATATAT	NA	False	NA	NA	False	NA	NA	NA	100632609	100632782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_100632600_100632800
PB_novel_15879_0	chr15	-	174	1	Intergenic	novelGene_2816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATTTTTAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	100861961	100861787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_100861800_100862000
PB_novel_15886_0	chr15	-	156	1	Intergenic	novelGene_2817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAATTTTAAAACAAA	6653	False	NA	NA	False	NA	NA	NA	101047681	101047525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_101047500_101047700
PB_novel_15892_0	chr15	-	156	1	Intergenic	novelGene_2818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAATAAATAAAATT	NA	False	NA	NA	False	NA	NA	NA	101153352	101153196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_101153200_101153400
PB_novel_15898_0	chr15	-	173	1	Intergenic	novelGene_2819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	101908492	101908319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_101908300_101908500
PB_novel_15914_0	chr15	-	173	1	Intergenic	novelGene_2824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	102296213	102296040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_102296000_102296200
PB_novel_15918_0	chr15	-	183	1	Intergenic	novelGene_2820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAGAAAGAAAGAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	102177378	102177195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_102177200_102177400
PB_novel_15921_0	chr15	+	175	2	NNC	ENSMUSG00000058290.5	novel	2298	4	NA	NA	-5978	2096	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	102198722	102227607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr15_+_102198745_102227454
PB_novel_15921_1	chr15	+	176	1	Genic_Genomic	ENSMUSG00000058290.5	novel	NA	NA	NA	NA	-113	2096	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	2716	False	NA	NA	False	NA	NA	NA	102227431	102227607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr15_+_102227400_102227600
PB_novel_15923_0	chr15	-	156	1	Intergenic	novelGene_2821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATT	4838	False	NA	NA	False	NA	NA	NA	102219660	102219504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_102219500_102219700
PB_novel_15924_0	chr15	+	205	1	Intergenic	novelGene_2822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTTG	8636	False	NA	NA	False	NA	NA	NA	102233351	102233556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_102233400_102233600
PB_novel_15926_0	chr15	-	176	1	Intergenic	novelGene_2823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAATATCGA	8913	False	NA	NA	False	NA	NA	NA	102243707	102243531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_102243500_102243700
PB_novel_15933_0	chr15	+	172	1	Intergenic	novelGene_2825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTAAAAAATAAAAAAA	3408	False	NA	NA	False	NA	NA	NA	102299828	102300000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_102299800_102300000
PB_novel_15936_0	chr15	-	173	1	Intergenic	novelGene_2826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102311205	102311032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_102311000_102311200
PB_novel_15937_0	chr15	-	134	1	Intergenic	novelGene_2827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102321189	102321055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_102321100_102321200
PB_novel_15941_0	chr15	-	202	1	Intergenic	novelGene_2828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTTAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	102328667	102328465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_102328500_102328700
PB_novel_15947_0	chr15	-	177	1	Intergenic	novelGene_2829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAACC	NA	False	NA	NA	False	NA	NA	NA	102376044	102375867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_102375900_102376000
PB_novel_15962_0	chr15	-	177	1	Intergenic	novelGene_2830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102497650	102497473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_102497500_102497600
PB_novel_15964_0	chr15	+	319	1	FSM	ENSMUSG00000036305.8	ENSMUST00000146505.2	151	1	-21	-147	-21	147	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	102543451	102543770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr15_+_102543500_102543800
PB_novel_15965_0	chr15	+	177	1	Intergenic	novelGene_2831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	102560617	102560794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_102560600_102560800
PB_novel_15967_0	chr15	-	4902	1	NIC	ENSMUSG00000062683.12	novel	731	5	NA	NA	237	-188	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	4138	False	NA	NA	False	NA	NA	NA	102579325	102574423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_102574400_102579300
PB_novel_15968_0	chr15	+	4074	1	Antisense	novelGene_ENSMUSG00000062683.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGTAGG	NA	False	NA	NA	False	AGTAAA	-8	NA	102574430	102578504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_+_102574400_102578500
PB_novel_15970_0	chr15	-	185	1	Intergenic	novelGene_2832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	102598095	102597910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_102597900_102598100
PB_novel_15972_0	chr15	+	179	1	Intergenic	novelGene_2833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	102809571	102809750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_102809600_102809800
PB_novel_15976_0	chr15	-	1249	1	Antisense	novelGene_ENSMUSG00000050328.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	TATAAA	-41	NA	102846237	102844988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr15_-_102845000_102846200
PB_novel_15980_0	chr15	+	159	1	Intergenic	novelGene_2835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103118326	103118485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_103118300_103118500
PB_novel_15982_3	chr15	+	185	1	Intergenic	novelGene_2839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103202735	103202920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_103202700_103202900
PB_novel_15985_0	chr15	+	177	1	Intergenic	novelGene_2836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	750	False	NA	NA	False	NA	NA	NA	103136587	103136764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_103136600_103136800
PB_novel_15986_0	chr15	-	4474	1	Intergenic	novelGene_2837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	103141779	103137305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_103137300_103141800
PB_novel_15990_0	chr15	-	175	1	Intergenic	novelGene_2838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	8517	False	NA	NA	False	NA	NA	NA	103184865	103184690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_103184700_103184900
PB_novel_15994_0	chr15	-	176	1	Intergenic	novelGene_2840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACACA	NA	False	NA	NA	False	NA	NA	NA	103281469	103281293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_-_103281300_103281500
PB_novel_16006_0	chr16	+	789	1	Genic_Genomic	ENSMUSG00000116389.2	novel	NA	NA	NA	NA	-405	-1637	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAAACAGGA	NA	False	NA	NA	False	NA	NA	NA	3164370	3165159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_+_3164400_3165200
PB_novel_16008_0	chr16	+	440	1	Intergenic	novelGene_2182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTATGGTGAAAAAAAAAAAA	7903	False	NA	9	True	AGTAAA	-9	NA	3550114	3550554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_3550100_3550600
PB_novel_16010_0	chr16	-	2582	1	Intergenic	novelGene_2183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	3579151	3576569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_3576600_3579200
PB_novel_16013_1	chr16	+	177	1	Intergenic	novelGene_2184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATTTCCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	3607789	3607966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_3607800_3608000
PB_novel_16015_0	chr16	-	160	1	Intergenic	novelGene_2185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAACAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	3666556	3666396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_3666400_3666600
PB_novel_16017_0	chr16	-	158	1	Intergenic	novelGene_2187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	3759228	3759070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_3759100_3759200
PB_novel_16018_0	chr16	+	185	1	Intergenic	novelGene_2188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATTTTTAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	3791421	3791606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_3791400_3791600
PB_novel_16020_1	chr16	+	176	1	Intergenic	novelGene_2189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATTAAAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	3835652	3835828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_3835700_3835800
PB_novel_16028_1	chr16	+	173	1	Antisense	novelGene_ENSMUSG00000022521.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTGGGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3904800	3904973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_3904800_3905000
PB_novel_16029_0	chr16	-	171	1	Intergenic	novelGene_2190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAGAAAGCTTAG	NA	False	NA	NA	False	NA	NA	NA	3913705	3913534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_3913500_3913700
PB_novel_16030_0	chr16	-	175	1	Intergenic	novelGene_2191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAACAC	NA	False	NA	NA	False	NA	NA	NA	3914717	3914542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_3914500_3914700
PB_novel_16032_0	chr16	-	162	1	Intergenic	novelGene_2192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAAATAAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	3948852	3948690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_3948700_3948900
PB_novel_16038_0	chr16	-	176	1	Intergenic	novelGene_2193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAAAAGCCAGGG	NA	False	NA	NA	False	NA	NA	NA	4292277	4292101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_4292100_4292300
PB_novel_16052_0	chr16	+	135	1	Intergenic	novelGene_2194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4399021	4399156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_4399000_4399200
PB_novel_16059_0	chr16	+	167	1	Intergenic	novelGene_2195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	4450760	4450927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_4450800_4450900
PB_novel_16063_0	chr16	-	173	1	Intergenic	novelGene_2196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9993	False	NA	NA	False	NA	NA	NA	4513072	4512899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_4512900_4513100
PB_novel_16065_0	chr16	-	175	1	Antisense	novelGene_ENSMUSG00000086944.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGCAGCTGG	1458	False	NA	NA	False	NA	NA	NA	4547963	4547788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_4547800_4548000
PB_novel_16066_0	chr16	-	157	1	Intergenic	novelGene_2197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	4570616	4570459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_4570500_4570600
PB_novel_16067_0	chr16	+	174	1	Antisense	novelGene_ENSMUSG00000004071.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGTC	NA	False	NA	NA	False	NA	NA	NA	4588849	4589023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_4588800_4589000
PB_novel_16072_1	chr16	+	802	3	Antisense	novelGene_ENSMUSG00000039568.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9439	False	NA	NA	False	NA	NA	NA	4693671	4698160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_4693736_4694227_4694286_4697480
PB_novel_16073_0	chr16	+	1445	1	Antisense	novelGene_ENSMUSG00000039568.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	9439	False	NA	NA	False	NA	NA	NA	4693671	4695116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_4693700_4695100
PB_novel_16075_0	chr16	-	346	1	Intergenic	novelGene_2198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7765	False	NA	NA	False	NA	NA	NA	4711391	4711045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_4711000_4711400
PB_novel_16076_0	chr16	-	196	1	Intergenic	novelGene_2199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAATAAATAAA	2989	False	NA	NA	False	NA	NA	NA	4766743	4766547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_4766500_4766700
PB_novel_16079_1	chr16	+	156	1	Intergenic	novelGene_2200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	4802340	4802496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_4802300_4802500
PB_novel_16082_0	chr16	-	215	1	Intergenic	novelGene_2201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAAAAAAATAG	8087	False	NA	NA	False	NA	NA	NA	4821214	4820999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_4821000_4821200
PB_novel_16089_0	chr16	-	209	1	Intergenic	novelGene_2202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1196	False	NA	NA	False	NA	NA	NA	4879267	4879058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_4879100_4879300
PB_novel_16094_0	chr16	+	172	1	Intergenic	novelGene_2203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAAGAAAAA	2891	False	NA	NA	False	NA	NA	NA	5083840	5084012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_5083800_5084000
PB_novel_16098_0	chr16	-	176	1	Intergenic	novelGene_2204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5299618	5299442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_5299400_5299600
PB_novel_16103_0	chr16	-	3389	1	Intergenic	novelGene_2205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATACA	-18	NA	7745784	7742395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_7742400_7745800
PB_novel_16104_0	chr16	-	3561	1	Intergenic	novelGene_2206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	7751788	7748227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_7748200_7751800
PB_novel_16109_0	chr16	+	168	1	Intergenic	novelGene_2207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8398992	8399160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_8399000_8399200
PB_novel_16111_0	chr16	-	177	1	Intergenic	novelGene_2208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGTT	3962	False	NA	NA	False	NA	NA	NA	8421193	8421016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_8421000_8421200
PB_novel_16113_0	chr16	-	182	1	Intergenic	novelGene_2209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	8474217	8474035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_8474000_8474200
PB_novel_16114_1	chr16	+	177	1	Intergenic	novelGene_2210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	304	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	8550267	8550444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_8550300_8550400
PB_novel_16125_0	chr16	+	172	1	Intergenic	novelGene_2211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAATAGAAA	NA	False	NA	NA	False	NA	NA	NA	8587222	8587394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_8587200_8587400
PB_novel_16128_0	chr16	-	179	1	Intergenic	novelGene_2212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAGAAAATATTTA	NA	False	NA	NA	False	NA	NA	NA	8590541	8590362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_8590400_8590500
PB_novel_16129_0	chr16	-	338	1	Intergenic	novelGene_2213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8601247	8600909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_8600900_8601200
PB_novel_16130_0	chr16	+	177	1	Intergenic	novelGene_2214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	551	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTAAATAAAAAAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	8605622	8605799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_8605600_8605800
PB_novel_16132_0	chr16	-	175	1	Intergenic	novelGene_2215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	2570	False	NA	NA	False	NA	NA	NA	8621360	8621185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_8621200_8621400
PB_novel_16133_0	chr16	+	172	1	Intergenic	novelGene_2216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	2969	False	NA	NA	False	NA	NA	NA	8622773	8622945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_8622800_8622900
PB_novel_16143_0	chr16	+	177	1	Intergenic	novelGene_2217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8678702	8678879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_8678700_8678900
PB_novel_16159_0	chr16	+	3827	1	Intergenic	novelGene_2218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8996355	9000182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_8996400_9000200
PB_novel_16176_0	chr16	+	180	1	Intergenic	novelGene_2219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAACAAAACAACT	NA	False	NA	NA	False	NA	NA	NA	10123153	10123333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_10123200_10123300
PB_novel_16178_0	chr16	+	1284	1	Genic_Genomic	ENSMUSG00000022503.11	novel	NA	NA	NA	NA	2771	862	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAATAAATACATCTA	NA	False	NA	NA	False	NA	NA	NA	10241870	10243154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_+_10241900_10243200
PB_novel_16199_0	chr16	+	185	1	Intergenic	novelGene_2220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10975821	10976006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_10975800_10976000
PB_novel_16213_1	chr16	+	175	1	Intergenic	novelGene_2221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAATTTATATAAA	2909	False	NA	NA	False	NA	NA	NA	11080787	11080962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_11080800_11081000
PB_novel_16220_0	chr16	+	181	1	Intergenic	novelGene_2222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACCCAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	11190924	11191105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_11190900_11191100
PB_novel_16223_0	chr16	-	190	1	Intergenic	novelGene_2223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAATTAAAAAAAAAA	5218	False	NA	NA	False	NA	NA	NA	11283087	11282897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_11282900_11283100
PB_novel_16224_0	chr16	-	183	1	Intergenic	novelGene_2224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11416509	11416326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_11416300_11416500
PB_novel_16226_0	chr16	-	184	1	Intergenic	novelGene_2225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAGAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12386062	12385878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_12385900_12386100
PB_novel_16235_0	chr16	-	170	1	Intergenic	novelGene_2226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	13080881	13080711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_13080700_13080900
PB_novel_16239_0	chr16	-	2482	1	Antisense	novelGene_ENSMUSG00000009569.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13212765	13210283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_13210300_13212800
PB_novel_16241_1	chr16	+	2662	1	Intergenic	novelGene_2227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13379600	13382262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_13379600_13382300
PB_novel_16244_0	chr16	+	169	1	Intergenic	novelGene_2228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATCTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13432634	13432803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_13432600_13432800
PB_novel_16247_0	chr16	-	176	1	Intergenic	novelGene_2229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGCTGA	NA	False	NA	NA	False	NA	NA	NA	13440733	13440557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_13440600_13440700
PB_novel_16249_0	chr16	+	173	1	Intergenic	novelGene_2230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGGTCGT	NA	False	NA	NA	False	NA	NA	NA	13460253	13460426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_13460300_13460400
PB_novel_16254_0	chr16	-	239	1	Intergenic	novelGene_2231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	2925	False	NA	NA	False	AAGAAA	-41	NA	13538324	13538085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_13538100_13538300
PB_novel_16257_0	chr16	+	166	1	Intergenic	novelGene_2232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	13557761	13557927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_13557800_13557900
PB_novel_16258_0	chr16	+	177	1	Intergenic	novelGene_2233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAACTAAATGTAA	NA	False	NA	NA	False	NA	NA	NA	13561526	13561703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_13561500_13561700
PB_novel_16259_0	chr16	+	175	1	Intergenic	novelGene_2234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAGAAAACCAGAC	NA	False	NA	NA	False	NA	NA	NA	13562812	13562987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_13562800_13563000
PB_novel_16260_0	chr16	+	132	1	Intergenic	novelGene_2235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13567112	13567244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_13567100_13567200
PB_novel_16265_0	chr16	+	165	1	Intergenic	novelGene_2236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATCTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13583324	13583489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_13583300_13583500
PB_novel_16267_0	chr16	+	202	1	Intergenic	novelGene_2237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	13585514	13585716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_13585500_13585700
PB_novel_16269_0	chr16	-	169	1	Intergenic	novelGene_2238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13594792	13594623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_13594600_13594800
PB_novel_16270_0	chr16	-	1676	1	Intergenic	novelGene_2239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13598511	13596835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_13596800_13598500
PB_novel_16272_0	chr16	+	176	1	Intergenic	novelGene_2240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGCAGC	NA	False	NA	NA	False	NA	NA	NA	13627737	13627913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_13627700_13627900
PB_novel_16282_2	chr16	+	181	1	Intergenic	novelGene_2241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	13691480	13691661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_13691500_13691700
PB_novel_16284_0	chr16	-	2111	1	NIC	ENSMUSG00000022680.15	novel	4228	24	NA	NA	-8	-13765	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9796	False	NA	NA	False	NA	NA	NA	13720893	13718782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_13718800_13720900
PB_novel_16288_0	chr16	-	186	1	Intergenic	novelGene_2242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	13808978	13808792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_13808800_13809000
PB_novel_16295_0	chr16	-	166	1	Intergenic	novelGene_2243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACAT	NA	False	NA	NA	False	NA	NA	NA	13915632	13915466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_13915500_13915600
PB_novel_16296_0	chr16	-	170	1	Intergenic	novelGene_2244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	13949789	13949619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_13949600_13949800
PB_novel_16297_0	chr16	+	1906	1	Antisense	novelGene_ENSMUSG00000060657.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13953966	13955872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_13954000_13955900
PB_novel_16300_0	chr16	-	3706	1	NIC	ENSMUSG00000060657.9	novel	7751	27	NA	NA	24	-14571	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACACAAAAAAAAAAAAAAAA	9840	False	NA	NA	False	NA	NA	NA	13977107	13973401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_13973400_13977100
PB_novel_16303_0	chr16	-	181	1	Intergenic	novelGene_2245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAATTTTTTAAAATTGC	NA	False	NA	NA	False	NA	NA	NA	14021695	14021514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_14021500_14021700
PB_novel_16305_0	chr16	-	172	1	Intergenic	novelGene_2246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	14140993	14140821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_14140800_14141000
PB_novel_16315_0	chr16	-	176	1	Intergenic	novelGene_2247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAACAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	15393335	15393159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_15393200_15393300
PB_novel_16316_1	chr16	-	176	1	Intergenic	novelGene_2249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAATGTG	NA	False	NA	NA	False	NA	NA	NA	15406685	15406509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_15406500_15406700
PB_novel_16319_0	chr16	+	178	1	Intergenic	novelGene_2248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	403	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15401555	15401733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_15401600_15401700
PB_novel_16321_0	chr16	+	177	1	Intergenic	novelGene_2250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATCAGTTGGGAT	NA	False	NA	NA	False	NA	NA	NA	15413958	15414135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_15414000_15414100
PB_novel_16329_0	chr16	-	227	1	Intergenic	novelGene_2251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	15467647	15467420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_15467400_15467600
PB_novel_16330_0	chr16	-	184	1	Intergenic	novelGene_2252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGCT	NA	False	NA	NA	False	NA	NA	NA	15477171	15476987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_15477000_15477200
PB_novel_16331_0	chr16	-	177	1	Intergenic	novelGene_2253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAAACAGG	NA	False	NA	NA	False	NA	NA	NA	15483339	15483162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_15483200_15483300
PB_novel_16344_0	chr16	-	218	1	Intergenic	novelGene_2254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16123748	16123530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_16123500_16123700
PB_novel_16352_0	chr16	-	197	1	Intergenic	novelGene_2255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCTATTG	NA	False	NA	NA	False	NA	NA	NA	16419203	16419006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_16419000_16419200
PB_novel_16355_1	chr16	-	177	1	Intergenic	novelGene_2256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAACAACAAAA	1481	False	NA	NA	False	NA	NA	NA	16716649	16716472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_16716500_16716600
PB_novel_16358_0	chr16	-	157	1	Intergenic	novelGene_2257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	16737424	16737267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_16737300_16737400
PB_novel_16364_0	chr16	-	175	1	Intergenic	novelGene_2258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16805883	16805708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_16805700_16805900
PB_novel_16372_0	chr16	-	168	1	Intergenic	novelGene_2259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATTTTTTTAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	16898157	16897989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_16898000_16898200
PB_novel_16374_1	chr16	+	177	1	Intergenic	novelGene_2260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAACAAGC	NA	False	NA	NA	False	NA	NA	NA	16924489	16924666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_16924500_16924700
PB_novel_16376_0	chr16	+	161	1	Intergenic	novelGene_2261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAGAAAATAAGAAGATAA	NA	False	NA	NA	False	NA	NA	NA	16933485	16933646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_16933500_16933600
PB_novel_16386_0	chr16	-	177	1	Intergenic	novelGene_2262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGTAAGATGTT	NA	False	NA	NA	False	NA	NA	NA	17025333	17025156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_17025200_17025300
PB_novel_16393_0	chr16	+	167	1	Intergenic	novelGene_2263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATCTAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17089280	17089447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_17089300_17089400
PB_novel_16394_1	chr16	+	171	2	Antisense	novelGene_ENSMUSG00000065331.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATAATAATAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	17089279	17205765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_17089326_17205640
PB_novel_16394_2	chr16	+	157	1	Intergenic	novelGene_2266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATAAATAAATAATAATAA	4649	False	NA	NA	False	NA	NA	NA	17205594	17205751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_17205600_17205800
PB_novel_16399_0	chr16	+	176	1	Intergenic	novelGene_2264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAAAGAAATGC	5148	False	NA	NA	False	NA	NA	NA	17186789	17186965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_17186800_17187000
PB_novel_16402_0	chr16	+	178	1	Intergenic	novelGene_2265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1034	False	NA	NA	False	NA	NA	NA	17201979	17202157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_17202000_17202200
PB_novel_16405_0	chr16	-	176	1	Intergenic	novelGene_2267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAATATTTTAAAAAAA	7344	False	NA	NA	False	NA	NA	NA	17274170	17273994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_17274000_17274200
PB_novel_16406_0	chr16	+	176	1	Intergenic	novelGene_2268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAGA	7944	False	NA	NA	False	NA	NA	NA	17284615	17284791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_17284600_17284800
PB_novel_16407_0	chr16	+	170	1	Intergenic	novelGene_2269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATGCTGAA	NA	False	NA	NA	False	NA	NA	NA	17293481	17293651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_17293500_17293700
PB_novel_16409_0	chr16	-	597	1	Intergenic	novelGene_2270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17294974	17294377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_17294400_17295000
PB_novel_16411_0	chr16	+	173	1	Intergenic	novelGene_2271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGAGAGAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	17326112	17326285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_17326100_17326300
PB_novel_16414_0	chr16	-	176	1	Intergenic	novelGene_2272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17356491	17356315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_17356300_17356500
PB_novel_16416_0	chr16	-	175	1	Intergenic	novelGene_2273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGTACA	NA	False	NA	NA	False	NA	NA	NA	17406896	17406721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_17406700_17406900
PB_novel_16422_0	chr16	-	175	1	Intergenic	novelGene_2274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAAAAAAAAAAAAAAAG	314	False	NA	NA	False	NA	NA	NA	17508567	17508392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_17508400_17508600
PB_novel_16425_1	chr16	+	110	1	Intergenic	novelGene_2275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAACTGAGTATGAC	NA	False	NA	NA	False	NA	NA	NA	17542219	17542329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_17542200_17542300
PB_novel_16426_0	chr16	+	188	1	Intergenic	novelGene_2276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTTAAAAAAAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	17549032	17549220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_17549000_17549200
PB_novel_16427_0	chr16	+	157	1	Intergenic	novelGene_2277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAACTTTAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	17559674	17559831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_17559700_17559800
PB_novel_16429_0	chr16	+	1989	1	NIC	ENSMUSG00000022750.19	novel	464	3	NA	NA	542	2091	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	1311	False	NA	NA	False	NA	NA	NA	17582498	17584487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_17582500_17584500
PB_novel_16434_0	chr16	+	175	1	Intergenic	novelGene_2278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	17684634	17684809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_17684600_17684800
PB_novel_16436_0	chr16	-	4462	1	Intergenic	novelGene_2279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17753542	17749080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_17749100_17753500
PB_novel_16452_0	chr16	-	2250	1	NIC	ENSMUSG00000022718.13	novel	4320	14	NA	NA	-1423	-862	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACTCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-26	NA	18076417	18074167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_-_18074200_18076400
PB_novel_16453_0	chr16	+	174	1	Intergenic	novelGene_2280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	18078584	18078758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_18078600_18078800
PB_novel_16463_0	chr16	+	175	1	Intergenic	novelGene_2281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18162858	18163033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_18162900_18163000
PB_novel_16464_0	chr16	-	176	1	Intergenic	novelGene_2282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTGCCACAGACA	NA	False	NA	NA	False	NA	NA	NA	18173087	18172911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_18172900_18173100
PB_novel_16469_0	chr16	-	177	1	Intergenic	novelGene_2283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAATCCATTTT	NA	False	NA	NA	False	NA	NA	NA	18258003	18257826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_18257800_18258000
PB_novel_16469_1	chr16	-	176	2	Antisense	novelGene_ENSMUSG00000116842.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAATCCATTTT	7193	False	NA	NA	False	NA	NA	NA	18393641	18257826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_18257954_18393592
PB_novel_16472_0	chr16	+	180	1	Intergenic	novelGene_2284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAGAAAGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	18313084	18313264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_18313100_18313300
PB_novel_16474_0	chr16	-	1051	1	Intergenic	novelGene_2285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18322573	18321522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_18321500_18322600
PB_novel_16477_0	chr16	+	183	1	Intergenic	novelGene_2286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATGCCATTAACCA	NA	False	NA	NA	False	NA	NA	NA	18329876	18330059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_18329900_18330100
PB_novel_16480_0	chr16	+	164	1	Intergenic	novelGene_2287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAATAATAATAAAAAAA	687	False	NA	NA	False	NA	NA	NA	18349033	18349197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_18349000_18349200
PB_novel_16482_0	chr16	-	175	1	Intergenic	novelGene_2288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGGGA	7193	False	NA	NA	False	NA	NA	NA	18393641	18393466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_18393500_18393600
PB_novel_16487_0	chr16	-	180	1	Intergenic	novelGene_2289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18518130	18517950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_18518000_18518100
PB_novel_16492_0	chr16	-	219	1	Intergenic	novelGene_2290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATATATATATATAT	NA	False	NA	NA	False	AATAAA	-27	NA	18606503	18606284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_18606300_18606500
PB_novel_16498_0	chr16	+	175	1	Intergenic	novelGene_2291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18659227	18659402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_18659200_18659400
PB_novel_16499_0	chr16	+	177	1	Intergenic	novelGene_2292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	18660899	18661076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_18660900_18661100
PB_novel_16506_0	chr16	-	526	1	Intergenic	novelGene_2293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	18717857	18717331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_18717300_18717900
PB_novel_16514_1	chr16	-	3382	1	Antisense	novelGene_ENSMUSG00000022686.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATGACAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAGA	-18	NA	19587200	19583818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_19583800_19587200
PB_novel_16516_0	chr16	+	181	1	Intergenic	novelGene_2294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	19914278	19914459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_19914300_19914500
PB_novel_16519_0	chr16	-	964	1	FSM	ENSMUSG00000084838.4	ENSMUST00000117664.2	286	1	-88	-590	-88	590	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTGTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-1	NA	19995850	19994886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_19994900_19995800
PB_novel_16528_0	chr16	+	176	1	Intergenic	novelGene_2295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAACTCAGTTA	2813	False	NA	NA	False	NA	NA	NA	20115323	20115499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_20115300_20115500
PB_novel_16531_0	chr16	+	174	1	Intergenic	novelGene_2296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAGAAAAA	2544	False	NA	NA	False	NA	NA	NA	20126373	20126547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_20126400_20126500
PB_novel_16534_0	chr16	+	181	1	Intergenic	novelGene_2297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6060	False	NA	NA	False	NA	NA	NA	20158948	20159129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_20158900_20159100
PB_novel_16536_0	chr16	+	176	1	Intergenic	novelGene_2298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAACACAA	NA	False	NA	NA	False	NA	NA	NA	20165111	20165287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_20165100_20165300
PB_novel_16537_0	chr16	+	176	1	Intergenic	novelGene_2299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20170941	20171117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_20170900_20171100
PB_novel_16543_0	chr16	+	181	1	Intergenic	novelGene_2300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	20253126	20253307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_20253100_20253300
PB_novel_16546_0	chr16	-	169	1	Intergenic	novelGene_2301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAAATGAATTA	3559	False	NA	NA	False	NA	NA	NA	20298820	20298651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_20298700_20298800
PB_novel_16552_0	chr16	+	906	1	NIC	ENSMUSG00000003235.14	novel	2554	16	NA	NA	75	-9526	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20317641	20318547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_20317600_20318500
PB_novel_16559_1	chr16	-	169	1	Intergenic	novelGene_2302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAGAATTAAAAATA	7745	False	NA	NA	False	NA	NA	NA	20418648	20418479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_20418500_20418600
PB_novel_16564_0	chr16	+	172	1	Intergenic	novelGene_2303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAAAATAAAAG	NA	False	NA	NA	False	NA	NA	NA	20459850	20460022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_20459800_20460000
PB_novel_16567_0	chr16	+	301	1	Intergenic	novelGene_2304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACACAGATGTT	NA	False	NA	NA	False	NA	NA	NA	20488172	20488473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_20488200_20488500
PB_novel_16572_0	chr16	-	178	1	Intergenic	novelGene_2305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	20594971	20594793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_20594800_20595000
PB_novel_16578_0	chr16	-	148	1	Intergenic	novelGene_2306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACATAAATAAATAAA	4968	False	NA	NA	False	NA	NA	NA	20729561	20729413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_20729400_20729600
PB_novel_16579_0	chr16	-	177	1	Intergenic	novelGene_2307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	20745594	20745417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_20745400_20745600
PB_novel_16580_0	chr16	+	178	1	Intergenic	novelGene_2308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAACTGTATAA	3390	False	NA	NA	False	NA	NA	NA	20932279	20932457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_20932300_20932500
PB_novel_16583_0	chr16	-	170	1	Intergenic	novelGene_2309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATTATG	NA	False	NA	NA	False	NA	NA	NA	21008573	21008403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_21008400_21008600
PB_novel_16590_0	chr16	-	283	1	Intergenic	novelGene_2310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAATAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	21191497	21191214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_21191200_21191500
PB_novel_16591_0	chr16	+	171	1	Intergenic	novelGene_2311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTTTTAAAAAAAAAAGAGG	2779	False	NA	NA	False	NA	NA	NA	21207833	21208004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_21207800_21208000
PB_novel_16598_0	chr16	+	206	1	Intergenic	novelGene_2312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	21504510	21504716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_21504500_21504700
PB_novel_16600_0	chr16	+	175	1	Intergenic	novelGene_2313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAAATGAG	3451	False	NA	NA	False	NA	NA	NA	21530915	21531090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_21530900_21531100
PB_novel_16630_0	chr16	+	454	1	Intergenic	novelGene_2314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22070682	22071136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_22070700_22071100
PB_novel_16634_0	chr16	+	788	1	Intergenic	novelGene_2315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGGAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	22083492	22084280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_22083500_22084300
PB_novel_16636_0	chr16	-	173	1	Intergenic	novelGene_2316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACATCCAAAGTC	8274	False	NA	NA	False	NA	NA	NA	22113043	22112870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_22112900_22113000
PB_novel_16640_0	chr16	+	176	1	Intergenic	novelGene_2317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	22169421	22169597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_22169400_22169600
PB_novel_16654_0	chr16	-	177	1	Intergenic	novelGene_2318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	22753779	22753602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_22753600_22753800
PB_novel_16655_0	chr16	-	176	1	Intergenic	novelGene_2319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAGTGAA	NA	False	NA	NA	False	NA	NA	NA	22835528	22835352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_22835400_22835500
PB_novel_16656_0	chr16	+	177	1	Intergenic	novelGene_2320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	1037	False	NA	NA	False	NA	NA	NA	22880012	22880189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_22880000_22880200
PB_novel_16657_0	chr16	-	177	1	Intergenic	novelGene_2321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATAAACTGAAGCC	8702	False	NA	NA	False	NA	NA	NA	22890735	22890558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_22890600_22890700
PB_novel_16668_0	chr16	+	183	1	Intergenic	novelGene_2322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAATAAGT	NA	False	NA	NA	False	NA	NA	NA	23093965	23094148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_23094000_23094100
PB_novel_16669_0	chr16	+	280	1	Intergenic	novelGene_2323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAACTTAAAA	6966	False	NA	NA	False	AATAAA	-10	NA	23153566	23153846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_23153600_23153800
PB_novel_16670_0	chr16	+	160	1	Intergenic	novelGene_2324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAATTGAAAAAT	1840	False	NA	NA	False	NA	NA	NA	23159181	23159341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_23159200_23159300
PB_novel_16673_0	chr16	-	188	1	Intergenic	novelGene_2325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	23439215	23439027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_23439000_23439200
PB_novel_16676_0	chr16	-	138	1	Intergenic	novelGene_2326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAAAATAAATATTTT	7957	False	NA	NA	False	NA	NA	NA	24208555	24208417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_24208400_24208600
PB_novel_16679_0	chr16	+	176	1	Intergenic	novelGene_2327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	24587423	24587599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_24587400_24587600
PB_novel_16680_0	chr16	+	184	1	Intergenic	novelGene_2328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	24650622	24650806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_24650600_24650800
PB_novel_16691_0	chr16	+	1886	1	Intergenic	novelGene_2329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAAATCTTAAA	NA	False	NA	NA	False	NA	NA	NA	28740314	28742200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_28740300_28742200
PB_novel_16695_0	chr16	+	178	1	Intergenic	novelGene_2330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29442388	29442566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_29442400_29442600
PB_novel_16698_0	chr16	+	182	1	Intergenic	novelGene_2331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	29484465	29484647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_29484500_29484600
PB_novel_16702_0	chr16	-	177	1	Intergenic	novelGene_2332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAGAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	29514895	29514718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_29514700_29514900
PB_novel_16705_0	chr16	-	177	1	Intergenic	novelGene_2333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	273	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29584021	29583844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_29583800_29584000
PB_novel_16710_0	chr16	+	149	1	Intergenic	novelGene_2334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	29768235	29768384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_29768200_29768400
PB_novel_16719_0	chr16	-	173	1	Intergenic	novelGene_2335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGGAAGTATCAAC	NA	False	NA	NA	False	NA	NA	NA	29971411	29971238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_29971200_29971400
PB_novel_16732_0	chr16	-	175	1	Intergenic	novelGene_2336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	30201132	30200957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_30201000_30201100
PB_novel_16741_0	chr16	+	176	1	Intergenic	novelGene_2337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATAAAATAAAATAG	NA	False	NA	NA	False	NA	NA	NA	30285160	30285336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_30285200_30285300
PB_novel_16745_0	chr16	-	171	1	Intergenic	novelGene_2338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAACAGTGAG	NA	False	NA	NA	False	NA	NA	NA	30345678	30345507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_30345500_30345700
PB_novel_16749_0	chr16	+	173	1	Intergenic	novelGene_2339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAATCTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30388820	30388993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_30388800_30389000
PB_novel_16757_0	chr16	-	182	1	Intergenic	novelGene_2340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAAGAAATTTG	NA	False	NA	NA	False	NA	NA	NA	30772775	30772593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_30772600_30772800
PB_novel_16758_0	chr16	+	175	1	Intergenic	novelGene_2341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	30805871	30806046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_30805900_30806000
PB_novel_16761_0	chr16	+	186	1	Intergenic	novelGene_2342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAGAAGAAACTTTCTAAA	NA	False	NA	NA	False	NA	NA	NA	30954822	30955008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_30954800_30955000
PB_novel_16764_0	chr16	+	173	1	Intergenic	novelGene_2343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	31024836	31025009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_31024800_31025000
PB_novel_16769_0	chr16	+	167	1	Intergenic	novelGene_2344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	31121653	31121820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_31121700_31121800
PB_novel_16775_0	chr16	-	159	1	Intergenic	novelGene_2345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAATAAAATTTTTA	NA	False	NA	NA	False	NA	NA	NA	31262207	31262048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_31262000_31262200
PB_novel_16779_0	chr16	-	175	1	Intergenic	novelGene_2346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAACCTTAAC	NA	False	NA	NA	False	NA	NA	NA	31391119	31390944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_31390900_31391100
PB_novel_16781_0	chr16	+	177	1	Intergenic	novelGene_2347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAAAAAAAATTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	31501589	31501766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_31501600_31501800
PB_novel_16782_0	chr16	-	172	1	Intergenic	novelGene_2348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTTAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31518814	31518642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_31518600_31518800
PB_novel_16785_0	chr16	-	176	1	Intergenic	novelGene_2349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAGAAAGAAAAACA	NA	False	NA	NA	False	NA	NA	NA	31671166	31670990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_31671000_31671200
PB_novel_16794_0	chr16	-	175	1	Intergenic	novelGene_2350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	31813652	31813477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_31813500_31813700
PB_novel_16798_0	chr16	+	880	1	Antisense	novelGene_ENSMUSG00000022781.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATACA	-13	NA	31835763	31836643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_31835800_31836600
PB_novel_16799_0	chr16	-	176	1	Intergenic	novelGene_2351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAAAAAAAAGATC	NA	False	NA	NA	False	NA	NA	NA	31844231	31844055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_31844100_31844200
PB_novel_16800_0	chr16	-	178	1	Intergenic	novelGene_2352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	31881057	31880879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_31880900_31881100
PB_novel_16805_0	chr16	+	1433	1	Intergenic	novelGene_2353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31895466	31896899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_31895500_31896900
PB_novel_16806_0	chr16	-	166	1	Intergenic	novelGene_2354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATATTAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	31910341	31910175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_31910200_31910300
PB_novel_16807_0	chr16	+	174	1	Intergenic	novelGene_2355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTTAAAAAAAAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	31923112	31923286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_31923100_31923300
PB_novel_16809_0	chr16	+	174	1	Intergenic	novelGene_2356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGTGCTTT	1759	False	NA	NA	False	NA	NA	NA	31950391	31950565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_31950400_31950600
PB_novel_16817_0	chr16	+	3474	1	Antisense	novelGene_ENSMUSG00000035764.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32055415	32058889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_32055400_32058900
PB_novel_16821_0	chr16	-	170	1	Intergenic	novelGene_2357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACCCAAAACAACAAC	6645	False	NA	NA	False	NA	NA	NA	32072674	32072504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_32072500_32072700
PB_novel_16823_0	chr16	-	176	1	Intergenic	novelGene_2358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAAAGGAT	564	False	NA	NA	False	NA	NA	NA	32078755	32078579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_32078600_32078800
PB_novel_16827_0	chr16	-	176	1	Intergenic	novelGene_2359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGTCATC	7780	False	NA	NA	False	NA	NA	NA	32137908	32137732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_32137700_32137900
PB_novel_16831_0	chr16	-	169	1	Intergenic	novelGene_2360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	3475	False	NA	NA	False	NA	NA	NA	32144537	32144368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_32144400_32144500
PB_novel_16832_0	chr16	+	330	1	Intergenic	novelGene_2361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTCTCAAAAAAAAAAAAAAA	3168	False	NA	NA	False	NA	NA	NA	32145990	32146320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_32146000_32146300
PB_novel_16836_0	chr16	-	3067	1	Antisense	novelGene_ENSMUSG00000053774.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32212146	32209079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_32209100_32212100
PB_novel_16837_0	chr16	-	175	1	Intergenic	novelGene_2362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGTTCTGG	NA	False	NA	NA	False	NA	NA	NA	32212873	32212698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_32212700_32212900
PB_novel_16848_3	chr16	-	172	2	Antisense	novelGene_ENSMUSG00000022797.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	32441211	32422737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_32422787_32441088
PB_novel_16852_0	chr16	-	162	1	Intergenic	novelGene_2363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	32445190	32445028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_32445000_32445200
PB_novel_16856_0	chr16	+	131	1	Intergenic	novelGene_2364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2305	False	NA	NA	False	NA	NA	NA	32473818	32473949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_32473800_32473900
PB_novel_16864_0	chr16	+	158	1	Intergenic	novelGene_2365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	32607030	32607188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_32607000_32607200
PB_novel_16868_0	chr16	-	169	1	Intergenic	novelGene_2366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTAAAAAAAAAAAAACTTC	8526	False	NA	NA	False	NA	NA	NA	32788911	32788742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_32788700_32788900
PB_novel_16869_0	chr16	+	173	1	Intergenic	novelGene_2367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	32845720	32845893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_32845700_32845900
PB_novel_16870_5	chr16	-	177	1	Intergenic	novelGene_2368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	329	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32923621	32923444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_32923400_32923600
PB_novel_16879_0	chr16	-	179	1	Intergenic	novelGene_2369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	32959578	32959399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_32959400_32959600
PB_novel_16881_0	chr16	-	182	1	Intergenic	novelGene_2370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAATAAAATCT	NA	False	NA	NA	False	NA	NA	NA	32967970	32967788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_32967800_32968000
PB_novel_16882_0	chr16	+	172	1	Intergenic	novelGene_2371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	32971463	32971635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_32971500_32971600
PB_novel_16897_1	chr16	-	2862	2	Antisense	novelGene_ENSMUSG00000022811.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33207722	33204648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_33206227_33206438
PB_novel_16898_0	chr16	-	1463	1	Intergenic	novelGene_2372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33207722	33206259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_33206300_33207700
PB_novel_16903_0	chr16	-	171	1	Intergenic	novelGene_2373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	33481354	33481183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_33481200_33481400
PB_novel_16905_0	chr16	-	175	1	Intergenic	novelGene_2374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGACACA	NA	False	NA	NA	False	NA	NA	NA	33527778	33527603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_33527600_33527800
PB_novel_16911_1	chr16	+	177	1	Intergenic	novelGene_2375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	33632936	33633113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_33632900_33633100
PB_novel_16912_0	chr16	+	168	1	Intergenic	novelGene_2376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	33638224	33638392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_33638200_33638400
PB_novel_16914_0	chr16	-	177	1	Intergenic	novelGene_2377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	33721455	33721278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_33721300_33721500
PB_novel_16918_0	chr16	-	177	1	Intergenic	novelGene_2378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAATTAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	33745724	33745547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_33745500_33745700
PB_novel_16930_0	chr16	+	193	1	Intergenic	novelGene_2379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGCAAAATTA	674	False	NA	NA	False	NA	NA	NA	34650626	34650819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_34650600_34650800
PB_novel_16938_0	chr16	-	2027	1	Intergenic	novelGene_2380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34916167	34914140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_34914100_34916200
PB_novel_16953_0	chr16	-	4541	1	Intergenic	novelGene_2381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35617521	35612980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_35613000_35617500
PB_novel_16955_0	chr16	-	2400	1	Intergenic	novelGene_2382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35621567	35619167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_35619200_35621600
PB_novel_16958_0	chr16	-	177	1	Intergenic	novelGene_2383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAACATAGAGCTAA	NA	False	NA	NA	False	NA	NA	NA	35666784	35666607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_35666600_35666800
PB_novel_16959_0	chr16	+	176	1	Intergenic	novelGene_2384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35676579	35676755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_35676600_35676800
PB_novel_16963_0	chr16	-	181	1	Intergenic	novelGene_2385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACCAAAATAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	35740733	35740552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_35740600_35740700
PB_novel_16967_0	chr16	+	154	1	Intergenic	novelGene_2386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAATATAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	35796580	35796734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_35796600_35796700
PB_novel_16971_0	chr16	-	147	1	Intergenic	novelGene_2387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATCTG	NA	False	NA	NA	False	NA	NA	NA	35819087	35818940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_35818900_35819100
PB_novel_16986_0	chr16	-	164	1	Intergenic	novelGene_2388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36568664	36568500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_36568500_36568700
PB_novel_16990_0	chr16	+	160	1	Intergenic	novelGene_2389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATTTAAAAAGAAAA	537	False	NA	NA	False	NA	NA	NA	36828936	36829096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_36828900_36829100
PB_novel_16991_0	chr16	-	3341	1	Antisense	novelGene_ENSMUSG00000034206.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36840894	36837553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_36837600_36840900
PB_novel_16994_0	chr16	-	180	1	Intergenic	novelGene_2390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	37043985	37043805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_37043800_37044000
PB_novel_16996_0	chr16	+	160	1	Intergenic	novelGene_2391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	37273882	37274042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_37273900_37274000
PB_novel_17007_0	chr16	-	171	1	Intergenic	novelGene_2392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAATCTCCAAAA	NA	False	NA	NA	False	NA	NA	NA	38123538	38123367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_38123400_38123500
PB_novel_17010_0	chr16	-	173	1	Intergenic	novelGene_2393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAAATCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	38151816	38151643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_38151600_38151800
PB_novel_17018_0	chr16	+	3673	1	Genic_Genomic	ENSMUSG00000075122.6	novel	NA	NA	NA	NA	35976	2431	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38315455	38319128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_+_38315500_38319100
PB_novel_17023_0	chr16	+	165	1	Antisense	novelGene_ENSMUSG00000034064.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAACAAACAACA	1394	False	NA	NA	False	NA	NA	NA	38354512	38354677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_38354500_38354700
PB_novel_17035_0	chr16	-	161	1	Intergenic	novelGene_2394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGTAAAATAAATTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40067174	40067013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_40067000_40067200
PB_novel_17043_0	chr16	-	176	1	Intergenic	novelGene_2395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAACCCT	NA	False	NA	NA	False	NA	NA	NA	43561843	43561667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_43561700_43561800
PB_novel_17055_0	chr16	+	172	1	Intergenic	novelGene_2396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	43948482	43948654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_43948500_43948700
PB_novel_17057_0	chr16	-	222	1	Intergenic	novelGene_2397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACCCTTAAAA	7051	False	NA	NA	False	NA	NA	NA	43966904	43966682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_43966700_43966900
PB_novel_17063_0	chr16	+	175	1	Intergenic	novelGene_2398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAACATTT	6845	False	NA	NA	False	NA	NA	NA	44130415	44130590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_44130400_44130600
PB_novel_17071_0	chr16	+	173	1	Intergenic	novelGene_2399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAGAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	44503938	44504111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_44503900_44504100
PB_novel_17073_0	chr16	+	3080	1	Genic_Genomic	ENSMUSG00000036208.14	novel	NA	NA	NA	NA	9587	2501	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGTACAGT	NA	False	NA	NA	False	AATAAA	-15	NA	44557068	44560148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_+_44557100_44560100
PB_novel_17078_0	chr16	+	177	1	Intergenic	novelGene_2400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACCAACTA	NA	False	NA	NA	False	NA	NA	NA	45527009	45527186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_45527000_45527200
PB_novel_17079_0	chr16	+	4825	1	Genic_Genomic	ENSMUSG00000086237.2	novel	NA	NA	NA	NA	-4617	-608	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45552248	45557073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr16_+_45552200_45557100
PB_novel_17081_0	chr16	-	175	1	Intergenic	novelGene_2401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGTAGATGAAAT	NA	False	NA	NA	False	NA	NA	NA	45637981	45637806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_45637800_45638000
PB_novel_17087_0	chr16	+	2861	1	Intergenic	novelGene_2402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46298845	46301706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_46298800_46301700
PB_novel_17088_0	chr16	-	173	1	Intergenic	novelGene_2403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAGGAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	46344314	46344141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_46344100_46344300
PB_novel_17090_0	chr16	-	175	1	Intergenic	novelGene_2404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47468841	47468666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_47468700_47468800
PB_novel_17096_0	chr16	+	176	1	Intergenic	novelGene_2405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	48102866	48103042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_48102900_48103000
PB_novel_17108_0	chr16	+	170	1	Intergenic	novelGene_2406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACATT	NA	False	NA	NA	False	NA	NA	NA	48201533	48201703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_48201500_48201700
PB_novel_17112_6	chr16	-	2871	1	Intergenic	novelGene_2407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48422119	48419248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_48419200_48422100
PB_novel_17112_8	chr16	-	681	2	Antisense	novelGene_ENSMUSG00000022652.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	705	junction_1	0	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATATAAAAACATAA	NA	False	NA	-34	True	AATAAA	-2	NA	48422120	48420495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_48421063_48422006
PB_novel_17127_0	chr16	-	156	1	Intergenic	novelGene_2408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAATAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	50751858	50751702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_50751700_50751900
PB_novel_17133_0	chr16	+	181	1	Intergenic	novelGene_2409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATGGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	51204302	51204483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_51204300_51204500
PB_novel_17143_0	chr16	+	178	1	Intergenic	novelGene_2410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAATGATCAAAGGA	NA	False	NA	NA	False	NA	NA	NA	54415717	54415895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_54415700_54415900
PB_novel_17145_0	chr16	+	175	1	Intergenic	novelGene_2411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGGGGGGGTAT	NA	False	NA	NA	False	NA	NA	NA	54970072	54970247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_54970100_54970200
PB_novel_17150_0	chr16	+	175	1	Intergenic	novelGene_2412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAACAAACAACTAAC	NA	False	NA	NA	False	NA	NA	NA	55702214	55702389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_55702200_55702400
PB_novel_17153_0	chr16	+	180	1	Intergenic	novelGene_2413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAATGTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55716383	55716563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_55716400_55716600
PB_novel_17156_0	chr16	-	168	1	Intergenic	novelGene_2414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATATTTTAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	55770503	55770335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_55770300_55770500
PB_novel_17158_0	chr16	-	182	1	Intergenic	novelGene_2415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAGAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	55799389	55799207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_55799200_55799400
PB_novel_17168_0	chr16	-	175	1	Intergenic	novelGene_2416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	5052	False	NA	NA	False	NA	NA	NA	55890330	55890155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_55890200_55890300
PB_novel_17170_0	chr16	+	175	1	Intergenic	novelGene_2417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	55897828	55898003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_55897800_55898000
PB_novel_17181_0	chr16	+	173	1	Intergenic	novelGene_2418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57052515	57052688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_57052500_57052700
PB_novel_17192_0	chr16	+	185	1	Intergenic	novelGene_2419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	58635193	58635378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_58635200_58635400
PB_novel_17200_0	chr16	+	2614	1	FSM	ENSMUSG00000092029.2	ENSMUST00000165914.2	661	1	-149	-1804	-149	1804	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-15	NA	61197469	61200083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_+_61197500_61200100
PB_novel_17201_0	chr16	-	178	1	Intergenic	novelGene_2420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	61527794	61527616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_61527600_61527800
PB_novel_17210_0	chr16	-	176	1	Intergenic	novelGene_2421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAATTAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	62902848	62902672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_62902700_62902800
PB_novel_17211_0	chr16	-	174	1	Intergenic	novelGene_2422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAATAAAAG	NA	False	NA	NA	False	NA	NA	NA	64638356	64638182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_64638200_64638400
PB_novel_17216_0	chr16	-	177	1	Intergenic	novelGene_2423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	64684750	64684573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_64684600_64684800
PB_novel_17218_0	chr16	+	155	1	Intergenic	novelGene_2424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAAAACAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	64696021	64696176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_64696000_64696200
PB_novel_17219_0	chr16	+	187	1	Intergenic	novelGene_2425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAATAAATAAATACCG	NA	False	NA	NA	False	NA	NA	NA	64702541	64702728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_64702500_64702700
PB_novel_17221_0	chr16	-	178	1	Intergenic	novelGene_2426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	64713051	64712873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_64712900_64713100
PB_novel_17223_0	chr16	-	181	1	Intergenic	novelGene_2427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64727105	64726924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_64726900_64727100
PB_novel_17226_0	chr16	-	158	1	Intergenic	novelGene_2428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAACAAACAAACAAATA	NA	False	NA	NA	False	NA	NA	NA	64883168	64883010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_64883000_64883200
PB_novel_17232_0	chr16	+	151	1	Intergenic	novelGene_2429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAATAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	67319637	67319788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_67319600_67319800
PB_novel_17242_0	chr16	-	161	1	Intergenic	novelGene_2430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATCTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72047139	72046978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_72047000_72047100
PB_novel_17244_0	chr16	+	174	1	Intergenic	novelGene_2431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGACACATTTTTAA	NA	False	NA	NA	False	NA	NA	NA	72457765	72457939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_72457800_72457900
PB_novel_17251_0	chr16	-	178	1	Intergenic	novelGene_2432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTTTAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	73300914	73300736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_73300700_73300900
PB_novel_17252_0	chr16	+	174	1	Intergenic	novelGene_2433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAGAAAGACAAT	NA	False	NA	NA	False	NA	NA	NA	74096686	74096860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_74096700_74096900
PB_novel_17261_0	chr16	-	165	1	Intergenic	novelGene_2434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCTTTTTTAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	76463387	76463222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_76463200_76463400
PB_novel_17278_0	chr16	+	157	1	Intergenic	novelGene_2435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	84516670	84516827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_84516700_84516800
PB_novel_17280_0	chr16	-	190	1	Intergenic	novelGene_2436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84566054	84565864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_84565900_84566100
PB_novel_17283_0	chr16	+	175	1	Intergenic	novelGene_2437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACACAA	9073	False	NA	NA	False	NA	NA	NA	84594551	84594726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_84594600_84594700
PB_novel_17289_0	chr16	-	175	1	Intergenic	novelGene_2438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	84843032	84842857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_84842900_84843000
PB_novel_17292_0	chr16	-	1616	1	FSM	ENSMUSG00000089698.2	ENSMUST00000161209.2	711	1	360	-1265	360	1265	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	AATAAA	-12	NA	85350471	85348855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr16_-_85348900_85350500
PB_novel_17293_0	chr16	+	167	1	Intergenic	novelGene_2439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85582389	85582556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_85582400_85582600
PB_novel_17294_0	chr16	-	173	1	Intergenic	novelGene_2440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATGAG	NA	False	NA	NA	False	NA	NA	NA	86719068	86718895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_86718900_86719100
PB_novel_17299_0	chr16	+	293	1	Intergenic	novelGene_2441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAGAAAGAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	87204392	87204685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_87204400_87204700
PB_novel_17300_0	chr16	+	176	1	Intergenic	novelGene_2442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAATAGAGTGACAC	NA	False	NA	NA	False	NA	NA	NA	87234456	87234632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_87234500_87234600
PB_novel_17308_0	chr16	-	154	2	Intergenic	novelGene_2443	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATAAATACATCTTTTAA	6892	False	NA	NA	False	NA	NA	NA	89564288	89531112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_89531120_89564141
PB_novel_17308_1	chr16	-	176	1	Intergenic	novelGene_2444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	6891	False	NA	NA	False	NA	NA	NA	89564289	89564113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_89564100_89564300
PB_novel_17313_0	chr16	+	1528	1	Intergenic	novelGene_2445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89743863	89745391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_89743900_89745400
PB_novel_17315_0	chr16	-	152	1	Intergenic	novelGene_2446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	7264	False	NA	NA	False	NA	NA	NA	89825949	89825797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_89825800_89825900
PB_novel_17316_0	chr16	+	2113	1	Intergenic	novelGene_2447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89847137	89849250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_89847100_89849200
PB_novel_17317_0	chr16	-	176	1	Intergenic	novelGene_2448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATTAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	89912626	89912450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_89912400_89912600
PB_novel_17318_0	chr16	+	168	1	Intergenic	novelGene_2449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAAAAGGAGGCTG	NA	False	NA	NA	False	NA	NA	NA	89921166	89921334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_89921200_89921300
PB_novel_17325_0	chr16	-	176	1	Intergenic	novelGene_2450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATATAGTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90014014	90013838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_90013800_90014000
PB_novel_17333_0	chr16	+	1513	1	Intergenic	novelGene_2451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAATTA	NA	False	NA	NA	False	NA	NA	NA	90081506	90083019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_90081500_90083000
PB_novel_17335_0	chr16	+	206	1	Intergenic	novelGene_2452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	155	False	NA	NA	False	NA	NA	NA	90090083	90090289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_90090100_90090300
PB_novel_17336_0	chr16	-	179	1	Intergenic	novelGene_2453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGACTT	NA	False	NA	NA	False	NA	NA	NA	90094038	90093859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_90093900_90094000
PB_novel_17337_0	chr16	-	161	1	Intergenic	novelGene_2454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAGGAAAAAATAT	NA	False	NA	NA	False	NA	NA	NA	90097269	90097108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_90097100_90097300
PB_novel_17339_0	chr16	+	176	1	Intergenic	novelGene_2455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90109213	90109389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_90109200_90109400
PB_novel_17340_0	chr16	-	176	1	Intergenic	novelGene_2456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	90119593	90119417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_90119400_90119600
PB_novel_17341_0	chr16	+	1583	1	NIC	ENSMUSG00000053414.9	novel	5393	11	NA	NA	320	-94109	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90183220	90184803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr16_+_90183200_90184800
PB_novel_17351_0	chr16	-	170	1	Intergenic	novelGene_2457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATTTTTTAAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	90702919	90702749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_90702700_90702900
PB_novel_17353_0	chr16	+	4469	1	Antisense	novelGene_ENSMUSG00000022973.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7054	False	NA	NA	False	NA	NA	NA	90754373	90758842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_90754400_90758800
PB_novel_17353_1	chr16	+	3773	2	Antisense	novelGene_ENSMUSG00000022973.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7054	False	NA	NA	False	NA	NA	NA	90754373	90758842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_90757566_90758261
PB_novel_17357_0	chr16	+	177	1	Intergenic	novelGene_2458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	305	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90781692	90781869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_90781700_90781900
PB_novel_17367_0	chr16	+	176	1	Intergenic	novelGene_2459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGAGAGAGAG	9315	False	NA	NA	False	NA	NA	NA	91234886	91235062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_91234900_91235100
PB_novel_17368_0	chr16	-	135	1	Intergenic	novelGene_2460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	91281344	91281209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_91281200_91281300
PB_novel_17377_0	chr16	+	178	1	Intergenic	novelGene_2461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91347629	91347807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_91347600_91347800
PB_novel_17378_0	chr16	+	172	1	Intergenic	novelGene_2462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATATTTTTTAAAAA	4214	False	NA	NA	False	NA	NA	NA	91381756	91381928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_91381800_91381900
PB_novel_17379_0	chr16	+	170	1	Intergenic	novelGene_2463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAGTAGAACT	1030	False	NA	NA	False	NA	NA	NA	91392855	91393025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_91392900_91393000
PB_novel_17380_0	chr16	-	176	1	Intergenic	novelGene_2464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	9290	False	NA	NA	False	NA	NA	NA	91397605	91397429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_91397400_91397600
PB_novel_17383_0	chr16	+	2400	1	Antisense	novelGene_ENSMUSG00000022962.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGTGATATTCTTAAAAAAA	2434	False	NA	NA	False	NA	NA	NA	91427854	91430254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_91427900_91430300
PB_novel_17392_0	chr16	+	177	1	Intergenic	novelGene_2465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAACAAAGAAA	5022	False	NA	NA	False	NA	NA	NA	91497669	91497846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_91497700_91497800
PB_novel_17405_0	chr16	-	6712	1	Antisense	novelGene_ENSMUSG00000089774.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91884475	91877763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_91877800_91884500
PB_novel_17412_0	chr16	+	160	1	Intergenic	novelGene_2466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	92133523	92133683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_92133500_92133700
PB_novel_17415_0	chr16	+	171	1	Intergenic	novelGene_2467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAACAAGCAAAAA	NA	False	NA	NA	False	NA	NA	NA	92314958	92315129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_92315000_92315100
PB_novel_17417_0	chr16	-	168	1	Intergenic	novelGene_2468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAATCTTAAAAAAAGAGA	6971	False	NA	NA	False	NA	NA	NA	92639812	92639644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_92639600_92639800
PB_novel_17422_0	chr16	+	179	1	Antisense	novelGene_ENSMUSG00000022948.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAGAGTAAG	NA	False	NA	NA	False	NA	NA	NA	93385605	93385784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_93385600_93385800
PB_novel_17436_0	chr16	+	177	1	Intergenic	novelGene_2469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TATTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	93655117	93655294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_93655100_93655300
PB_novel_17454_0	chr16	+	178	1	Intergenic	novelGene_2470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAGACAAGCATA	NA	False	NA	NA	False	NA	NA	NA	94203666	94203844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_94203700_94203800
PB_novel_17464_0	chr16	-	177	1	Intergenic	novelGene_2471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAACAAATGATTC	3231	False	NA	NA	False	NA	NA	NA	94356130	94355953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_94356000_94356100
PB_novel_17466_0	chr16	-	197	1	Intergenic	novelGene_2472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94427133	94426936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_94426900_94427100
PB_novel_17481_0	chr16	-	183	1	Intergenic	novelGene_2473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGTGA	NA	False	NA	NA	False	NA	NA	NA	95127009	95126826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_95126800_95127000
PB_novel_17483_0	chr16	+	166	1	Intergenic	novelGene_2474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	3147	False	NA	NA	False	NA	NA	NA	95244168	95244334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_95244200_95244300
PB_novel_17484_0	chr16	+	179	1	Intergenic	novelGene_2475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAATGAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	95319120	95319299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_95319100_95319300
PB_novel_17500_0	chr16	+	177	1	Intergenic	novelGene_2476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAACA	3216	False	NA	NA	False	NA	NA	NA	95828103	95828280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_95828100_95828300
PB_novel_17501_0	chr16	+	2932	1	Intergenic	novelGene_2477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-14	NA	95862717	95865649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_95862700_95865600
PB_novel_17511_0	chr16	-	177	1	Intergenic	novelGene_2478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	95968526	95968349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_95968300_95968500
PB_novel_17512_0	chr16	-	161	1	Intergenic	novelGene_2479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAATTAATTTAGA	925	False	NA	NA	False	NA	NA	NA	96016877	96016716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_96016700_96016900
PB_novel_17523_0	chr16	+	2676	1	Antisense	novelGene_ENSMUSG00000014039.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAGAAAACAAAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	97619584	97622260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_97619600_97622300
PB_novel_17532_0	chr16	+	161	1	Intergenic	novelGene_2480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAACAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	97792785	97792946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_+_97792800_97792900
PB_novel_17539_0	chr16	-	2748	1	Intergenic	novelGene_2481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97852981	97850233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_97850200_97853000
PB_novel_17547_0	chr17	-	173	1	Intergenic	novelGene_3296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAACTCAAT	NA	False	NA	NA	False	NA	NA	NA	3139820	3139647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_3139600_3139800
PB_novel_17552_0	chr17	-	178	1	Antisense	novelGene_ENSMUSG00000046201.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	3201233	3201055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_3201100_3201200
PB_novel_17560_0	chr17	-	182	1	Intergenic	novelGene_3297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGACTGGGGAAAG	NA	False	NA	NA	False	NA	NA	NA	3572300	3572118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_3572100_3572300
PB_novel_17574_0	chr17	-	170	1	Intergenic	novelGene_3298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAAAAAAAGGTG	5030	False	NA	NA	False	NA	NA	NA	5212264	5212094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_5212100_5212300
PB_novel_17577_0	chr17	-	177	1	Intergenic	novelGene_3299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGAGGC	NA	False	NA	NA	False	NA	NA	NA	5326939	5326762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_5326800_5326900
PB_novel_17588_0	chr17	+	179	1	Intergenic	novelGene_3300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7623	False	NA	NA	False	NA	NA	NA	5812281	5812460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_5812300_5812500
PB_novel_17598_0	chr17	-	177	1	Intergenic	novelGene_3301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	6057324	6057147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_6057100_6057300
PB_novel_17604_0	chr17	-	172	1	Intergenic	novelGene_3302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAAAAAAAAAAGAATGT	NA	False	NA	NA	False	NA	NA	NA	6150627	6150455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_6150500_6150600
PB_novel_17608_0	chr17	-	213	1	FSM	ENSMUSG00002074878.1	ENSMUST00020183334.1	109	1	40	-144	40	144	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATAAATAAA	NA	False	NA	NA	False	AATAAA	-16	NA	6182179	6181966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_6182000_6182200
PB_novel_17624_1	chr17	+	179	1	Intergenic	novelGene_3303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6462837	6463016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_6462800_6463000
PB_novel_17625_0	chr17	+	178	1	Intergenic	novelGene_3304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	6463283	6463461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_6463300_6463500
PB_novel_17629_0	chr17	+	197	1	Intergenic	novelGene_3305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAGGGGAAAAGATTTAA	6541	False	NA	NA	False	NA	NA	NA	6679960	6680157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_6680000_6680200
PB_novel_17630_3	chr17	+	178	1	Intergenic	novelGene_3306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	6988	False	NA	NA	False	NA	NA	NA	6680407	6680585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_6680400_6680600
PB_novel_17632_0	chr17	-	127	1	Intergenic	novelGene_3307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAACAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6697092	6696965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_6697000_6697100
PB_novel_17636_3	chr17	+	4303	9	Antisense	novelGene_ENSMUSG00000096780.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6707507	6718368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716180_6716313_6716836
PB_novel_17636_8	chr17	+	3127	10	Antisense	novelGene_ENSMUSG00000096780.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6707958	6718368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_6708880_6709604_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716180_6716313_6716836
PB_novel_17637_0	chr17	+	1407	1	Antisense	novelGene_ENSMUSG00000096780.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6716961	6718368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_6717000_6718400
PB_novel_17641_0	chr17	+	775	1	Intergenic	novelGene_3308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6728752	6729527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_6728800_6729500
PB_novel_17650_0	chr17	+	1957	1	Antisense	novelGene_ENSMUSG00000116560.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9982	False	NA	NA	False	AAAAAG	-34	NA	6792846	6794803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_6792800_6794800
PB_novel_17651_0	chr17	-	174	1	Intergenic	novelGene_3309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAATGTAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	6796407	6796233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_6796200_6796400
PB_novel_17653_0	chr17	+	170	1	Intergenic	novelGene_3310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAGAAGAAGTAA	4676	False	NA	NA	False	NA	NA	NA	6833152	6833322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_6833200_6833300
PB_novel_17654_0	chr17	-	4705	1	Intergenic	novelGene_3311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	254	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	6848641	6843936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_6843900_6848600
PB_novel_17664_0	chr17	-	180	1	Intergenic	novelGene_3312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAAAATTTTATTTAAAA	NA	False	NA	NA	False	NA	NA	NA	6920366	6920186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_6920200_6920400
PB_novel_17668_0	chr17	-	171	1	Intergenic	novelGene_3313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAGAAGTAA	9283	False	NA	NA	False	NA	NA	NA	6951878	6951707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_6951700_6951900
PB_novel_17669_0	chr17	+	179	1	Intergenic	novelGene_3314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	6973022	6973201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_6973000_6973200
PB_novel_17678_0	chr17	-	171	1	Intergenic	novelGene_3315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAATATCACAAAGTT	NA	False	NA	NA	False	NA	NA	NA	7283150	7282979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_7283000_7283200
PB_novel_17682_0	chr17	+	181	1	Intergenic	novelGene_3316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	7458412	7458593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_7458400_7458600
PB_novel_17688_0	chr17	+	168	1	Intergenic	novelGene_3317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAACAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	7808805	7808973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_7808800_7809000
PB_novel_17692_0	chr17	+	172	1	Intergenic	novelGene_3318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAATATCACAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	8329864	8330036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_8329900_8330000
PB_novel_17697_1	chr17	+	177	1	Intergenic	novelGene_3319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAAAGAAT	707	False	NA	NA	False	NA	NA	NA	8507051	8507228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_8507100_8507200
PB_novel_17699_0	chr17	+	178	1	Intergenic	novelGene_3320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8547032	8547210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_8547000_8547200
PB_novel_17703_0	chr17	-	135	1	Intergenic	novelGene_3321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8700668	8700533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_8700500_8700700
PB_novel_17706_0	chr17	-	161	1	Intergenic	novelGene_3322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	9036055	9035894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_9035900_9036100
PB_novel_17710_0	chr17	+	5817	1	Antisense	novelGene_ENSMUSG00000117341.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9929722	9935539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_9929700_9935500
PB_novel_17714_0	chr17	+	1903	1	Antisense	novelGene_ENSMUSG00000062078.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10433800	10435703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_10433800_10435700
PB_novel_17716_0	chr17	+	1958	1	Intergenic	novelGene_3323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAAAAAAC	NA	False	NA	NA	False	AAGAAA	-35	NA	10482467	10484425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_10482500_10484400
PB_novel_17719_0	chr17	-	1874	1	NIC	ENSMUSG00000062078.16	novel	8547	8	NA	NA	57	-104020	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAAGCT	NA	False	NA	NA	False	NA	NA	NA	10538233	10536359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_10536400_10538200
PB_novel_17722_0	chr17	+	168	1	Intergenic	novelGene_3324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	10571227	10571395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_10571200_10571400
PB_novel_17734_2	chr17	+	176	2	Antisense	novelGene_ENSMUSG00000089817.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	498	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	3782	False	NA	NA	False	NA	NA	NA	12913769	13067694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_12913894_13067642
PB_novel_17736_0	chr17	+	3034	1	Intergenic	novelGene_3326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-41	NA	12979870	12982904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_12979900_12982900
PB_novel_17739_0	chr17	+	176	1	Intergenic	novelGene_3327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	6413	False	NA	NA	False	NA	NA	NA	13067518	13067694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_13067500_13067700
PB_novel_17743_0	chr17	-	177	1	Intergenic	novelGene_3328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	13149485	13149308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_13149300_13149500
PB_novel_17753_0	chr17	+	184	1	Intergenic	novelGene_3329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	13208676	13208860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_13208700_13208900
PB_novel_17774_0	chr17	+	181	1	Intergenic	novelGene_3330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAAAAAAGGCC	NA	False	NA	NA	False	NA	NA	NA	13777765	13777946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_13777800_13777900
PB_novel_17781_0	chr17	+	7386	1	NIC	ENSMUSG00000068036.17	novel	822	5	NA	NA	22	-42538	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13980831	13988217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_13980800_13988200
PB_novel_17784_0	chr17	-	1692	1	Intergenic	novelGene_3331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAACAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	14004390	14002698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_14002700_14004400
PB_novel_17786_0	chr17	-	3745	1	Antisense	novelGene_ENSMUSG00000068036.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	14074063	14070318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_14070300_14074100
PB_novel_17791_0	chr17	+	176	1	Intergenic	novelGene_3332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAATTACATCTT	NA	False	NA	NA	False	NA	NA	NA	15067881	15068057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_15067900_15068100
PB_novel_17809_0	chr17	+	179	1	Intergenic	novelGene_3333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15267982	15268161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_15268000_15268200
PB_novel_17813_0	chr17	+	4218	1	Intergenic	novelGene_3334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	15289211	15293429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_15289200_15293400
PB_novel_17819_0	chr17	+	2444	1	NIC	ENSMUSG00000014763.9	novel	4420	11	NA	NA	23	-10139	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAGAAAAAAAACAAAAA	NA	False	NA	NA	False	AATATA	-44	NA	15616532	15618976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_15616500_15619000
PB_novel_17821_0	chr17	+	148	1	Intergenic	novelGene_3335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATCTTTTTTAAAAATA	NA	False	NA	NA	False	NA	NA	NA	15686854	15687002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_15686900_15687000
PB_novel_17824_0	chr17	-	167	1	Antisense	novelGene_ENSMUSG00000014767.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGGGTA	NA	False	NA	NA	False	NA	NA	NA	15739023	15738856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_15738900_15739000
PB_novel_17828_0	chr17	+	174	1	Intergenic	novelGene_3336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	15791823	15791997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_15791800_15792000
PB_novel_17829_0	chr17	+	174	1	Intergenic	novelGene_3337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGATGGC	NA	False	NA	NA	False	NA	NA	NA	15798615	15798789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_15798600_15798800
PB_novel_17830_0	chr17	-	155	1	Intergenic	novelGene_3338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAAAATAAAATTAAA	6240	False	NA	NA	False	NA	NA	NA	15800847	15800692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_15800700_15800800
PB_novel_17835_0	chr17	-	158	1	Intergenic	novelGene_3339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAAATAAATTA	NA	False	NA	NA	False	NA	NA	NA	15886341	15886183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_15886200_15886300
PB_novel_17837_0	chr17	+	173	1	Intergenic	novelGene_3340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	15911654	15911827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_15911700_15911800
PB_novel_17840_0	chr17	-	972	1	Intergenic	novelGene_3341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15967020	15966048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_15966000_15967000
PB_novel_17841_0	chr17	-	174	1	Intergenic	novelGene_3342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGAAGGTAAC	NA	False	NA	NA	False	NA	NA	NA	15971810	15971636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_15971600_15971800
PB_novel_17881_0	chr17	-	175	1	Intergenic	novelGene_3343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCTAA	NA	False	NA	NA	False	NA	NA	NA	17645033	17644858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_17644900_17645000
PB_novel_17884_0	chr17	-	175	1	Intergenic	novelGene_3344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17715567	17715392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_17715400_17715600
PB_novel_17887_0	chr17	-	2758	1	Intergenic	novelGene_3345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17754590	17751832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_17751800_17754600
PB_novel_17889_0	chr17	-	4067	1	Intergenic	novelGene_3346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	17838304	17834237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_17834200_17838300
PB_novel_17891_0	chr17	+	176	1	Intergenic	novelGene_3347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAGTGGAAAAAGAA	8140	False	NA	NA	False	NA	NA	NA	17958102	17958278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_17958100_17958300
PB_novel_17894_0	chr17	+	163	1	Intergenic	novelGene_3348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATGTTTAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	18642414	18642577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_18642400_18642600
PB_novel_17899_0	chr17	+	200	1	Intergenic	novelGene_3349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGGCAAGATGATTTA	NA	False	NA	NA	False	NA	NA	NA	20319929	20320129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_20319900_20320100
PB_novel_17901_1	chr17	-	8470	1	Antisense	novelGene_ENSMUSG00000067942.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	21245271	21236801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_21236800_21245300
PB_novel_17904_0	chr17	-	181	1	Intergenic	novelGene_3350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGAAATGTCAGA	4414	False	NA	NA	False	NA	NA	NA	21646038	21645857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_21645900_21646000
PB_novel_17907_0	chr17	-	208	1	Intergenic	novelGene_3351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	21744157	21743949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_21743900_21744200
PB_novel_17908_0	chr17	+	172	1	Intergenic	novelGene_3352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAACTACAA	NA	False	NA	NA	False	NA	NA	NA	21747044	21747216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_21747000_21747200
PB_novel_17929_0	chr17	+	3327	1	Intergenic	novelGene_3353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATAAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	22601667	22604994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_22601700_22605000
PB_novel_17950_0	chr17	+	198	1	Intergenic	novelGene_3354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAGTTAAAAAAAAAAA	33	False	NA	NA	False	NA	NA	NA	23808099	23808297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_23808100_23808300
PB_novel_17951_0	chr17	+	199	1	Intergenic	novelGene_3355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTTTTTTAAAAA	1506	False	NA	NA	False	NA	NA	NA	23809647	23809846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_23809600_23809800
PB_novel_17952_0	chr17	+	2593	1	Intergenic	novelGene_3356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	2986	False	NA	NA	False	NA	NA	NA	23811127	23813720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_23811100_23813700
PB_novel_17957_0	chr17	+	176	1	Intergenic	novelGene_3357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4614	False	NA	NA	False	NA	NA	NA	23833869	23834045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_23833900_23834000
PB_novel_17960_0	chr17	-	170	1	Intergenic	novelGene_3358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCCA	NA	False	NA	NA	False	NA	NA	NA	23867305	23867135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_23867100_23867300
PB_novel_17961_0	chr17	-	176	1	Intergenic	novelGene_3359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAATAATAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	23868171	23867995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_23868000_23868200
PB_novel_17962_0	chr17	+	162	1	Intergenic	novelGene_3360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTTTTTTTAAAAAAAGAAA	3463	False	NA	NA	False	NA	NA	NA	23871564	23871726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_23871600_23871700
PB_novel_17969_0	chr17	-	170	1	Intergenic	novelGene_3361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATTGACT	NA	False	NA	NA	False	NA	NA	NA	23986811	23986641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_23986600_23986800
PB_novel_17970_0	chr17	-	174	1	Intergenic	novelGene_3362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAATGTTC	6507	False	NA	-23	True	NA	NA	NA	23991594	23991420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_23991400_23991600
PB_novel_17972_0	chr17	+	191	1	Intergenic	novelGene_3363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24013278	24013469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_24013300_24013500
PB_novel_17975_0	chr17	-	5655	1	Antisense	novelGene_ENSMUSG00000039218.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAGAAATCAAAA	NA	False	NA	NA	False	NA	NA	NA	24038187	24032532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_24032500_24038200
PB_novel_17985_0	chr17	+	1462	1	NIC	ENSMUSG00000050762.6	novel	1253	6	NA	NA	6344	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	24263461	24264923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_24263500_24264900
PB_novel_17986_0	chr17	+	180	1	Intergenic	novelGene_3364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTTTTTAAAAATCTTAAA	NA	False	NA	NA	False	NA	NA	NA	24273381	24273561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_24273400_24273600
PB_novel_17987_0	chr17	-	176	1	Intergenic	novelGene_3365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAAGAATTA	NA	False	NA	NA	False	NA	NA	NA	24279936	24279760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_24279800_24279900
PB_novel_17994_0	chr17	-	175	1	Intergenic	novelGene_3366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAGCAAAATA	NA	False	NA	NA	False	NA	NA	NA	24352180	24352005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_24352000_24352200
PB_novel_18009_0	chr17	-	176	1	Intergenic	novelGene_3367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGTATAGA	NA	False	NA	NA	False	NA	NA	NA	24616970	24616794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_24616800_24617000
PB_novel_18020_0	chr17	+	157	1	Intergenic	novelGene_3368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	6219	False	NA	NA	False	NA	NA	NA	24706123	24706280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_24706100_24706300
PB_novel_18022_0	chr17	-	176	1	Intergenic	novelGene_3369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATACGTGAG	NA	False	NA	NA	False	NA	NA	NA	24753444	24753268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_24753300_24753400
PB_novel_18023_0	chr17	+	174	1	Intergenic	novelGene_3370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAATTGTTAAAAAAA	6046	False	NA	NA	False	NA	NA	NA	24759033	24759207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_24759000_24759200
PB_novel_18032_0	chr17	-	167	1	Intergenic	novelGene_3371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	24922546	24922379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_24922400_24922500
PB_novel_18037_0	chr17	+	177	1	Intergenic	novelGene_3372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	24959549	24959726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_24959500_24959700
PB_novel_18038_0	chr17	-	191	1	Intergenic	novelGene_3373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAGAAAA	1179	False	NA	NA	False	NA	NA	NA	24996687	24996496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_24996500_24996700
PB_novel_18039_0	chr17	+	176	1	Intergenic	novelGene_3374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAACTTCAAGTCT	NA	False	NA	NA	False	NA	NA	NA	25006531	25006707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_25006500_25006700
PB_novel_18045_0	chr17	-	193	1	Intergenic	novelGene_3375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAAGCTACAACACAC	NA	False	NA	NA	False	NA	NA	NA	25148126	25147933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_25147900_25148100
PB_novel_18059_0	chr17	+	2677	1	NIC	ENSMUSG00000036636.11	novel	4237	25	NA	NA	-5374	-3785	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAACAAAAAA	1631	False	NA	NA	False	NA	NA	NA	25372254	25374931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_25372300_25374900
PB_novel_18066_0	chr17	+	173	1	Intergenic	novelGene_3376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAACAAAACCAAA	822	False	NA	NA	False	NA	NA	NA	25575244	25575417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_25575200_25575400
PB_novel_18072_0	chr17	+	177	1	Intergenic	novelGene_3377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAATAAAAATA	3068	False	NA	NA	False	NA	NA	NA	25922422	25922599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_25922400_25922600
PB_novel_18088_0	chr17	+	178	1	Intergenic	novelGene_3378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAACCACCA	NA	False	NA	NA	False	NA	NA	NA	26158298	26158476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_26158300_26158500
PB_novel_18095_0	chr17	-	171	1	Intergenic	novelGene_3379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	26232516	26232345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_26232300_26232500
PB_novel_18097_0	chr17	-	175	1	Intergenic	novelGene_3380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATCTCATAAAAA	NA	False	NA	NA	False	NA	NA	NA	26257604	26257429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_26257400_26257600
PB_novel_18098_0	chr17	+	175	1	Intergenic	novelGene_3381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26269737	26269912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_26269700_26269900
PB_novel_18100_0	chr17	-	158	1	Intergenic	novelGene_3385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAGACTAGATTA	NA	False	NA	NA	False	NA	NA	NA	26471617	26471459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_26471500_26471600
PB_novel_18102_0	chr17	+	177	1	Intergenic	novelGene_3382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAGTTTAAGACAC	NA	False	NA	NA	False	NA	NA	NA	26312074	26312251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_26312100_26312300
PB_novel_18114_0	chr17	+	2308	1	NIC	ENSMUSG00000024182.18	novel	3777	11	NA	NA	-708	-479	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26406418	26408726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_26406400_26408700
PB_novel_18116_0	chr17	+	177	1	Intergenic	novelGene_3383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	26465676	26465853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_26465700_26465900
PB_novel_18117_0	chr17	-	128	1	Intergenic	novelGene_3384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAAAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	26471208	26471080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_26471100_26471200
PB_novel_18127_0	chr17	-	180	1	Intergenic	novelGene_3386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26804820	26804640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_26804600_26804800
PB_novel_18131_1	chr17	-	177	1	Intergenic	novelGene_3387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAATAGGAA	NA	False	NA	NA	False	NA	NA	NA	26894792	26894615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_26894600_26894800
PB_novel_18132_0	chr17	-	2629	1	Intergenic	novelGene_3388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26913274	26910645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_26910600_26913300
PB_novel_18133_0	chr17	-	153	1	Intergenic	novelGene_3389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAAAAAT	2360	False	NA	NA	False	NA	NA	NA	26937188	26937035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_26937000_26937200
PB_novel_18135_0	chr17	-	163	1	Intergenic	novelGene_3390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATATTAAAAA	3543	False	NA	NA	False	NA	NA	NA	26953377	26953214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_26953200_26953400
PB_novel_18136_0	chr17	-	177	1	Intergenic	novelGene_3391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTTAAAAAAAAAGGAGAG	7349	False	NA	NA	False	NA	NA	NA	26965690	26965513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_26965500_26965700
PB_novel_18144_0	chr17	+	1360	1	NIC	ENSMUSG00000024301.11	novel	819	3	NA	NA	12	-3046	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27136076	27137436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_27136100_27137400
PB_novel_18145_0	chr17	+	172	1	Intergenic	novelGene_3392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27140984	27141156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_27141000_27141200
PB_novel_18149_0	chr17	+	175	1	Intergenic	novelGene_3393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	6962	False	NA	NA	False	NA	NA	NA	27210305	27210480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_27210300_27210500
PB_novel_18150_0	chr17	-	176	1	Intergenic	novelGene_3394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAGAAAAAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	27217367	27217191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_27217200_27217400
PB_novel_18151_0	chr17	+	191	1	Intergenic	novelGene_3395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAATCTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27250948	27251139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_27250900_27251100
PB_novel_18153_0	chr17	-	156	1	Intergenic	novelGene_3396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATATTTT	NA	False	NA	NA	False	NA	NA	NA	27263670	27263514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_27263500_27263700
PB_novel_18155_0	chr17	-	170	1	Intergenic	novelGene_3397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27286991	27286821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_27286800_27287000
PB_novel_18167_0	chr17	+	205	1	Intergenic	novelGene_3398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAGTTTTTATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27450756	27450961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_27450800_27451000
PB_novel_18171_3	chr17	-	2364	5	Antisense	novelGene_ENSMUSG00000099237.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	5.24404424085076	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	7516	False	NA	NA	False	NA	NA	NA	27548992	27543051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_27544476_27544829_27544999_27545783_27545977_27546317_27546728_27548824
PB_novel_18171_7	chr17	-	2308	3	Antisense	novelGene_ENSMUSG00000099237.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_2	2	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	7516	False	NA	NA	False	NA	NA	NA	27548992	27543051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_27544999_27545783_27545977_27548824
PB_novel_18171_8	chr17	-	2098	2	Antisense	novelGene_ENSMUSG00000099237.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	7533	False	NA	NA	False	NA	NA	NA	27548975	27543051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_27544999_27548824
PB_novel_18175_0	chr17	-	182	1	Intergenic	novelGene_3399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGGATAAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	27762086	27761904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_27761900_27762100
PB_novel_18176_0	chr17	+	172	1	Antisense	novelGene_ENSMUSG00000116657.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAATTTTTAATTTTAAT	NA	False	NA	NA	False	NA	NA	NA	27764514	27764686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_27764500_27764700
PB_novel_18191_0	chr17	+	173	1	Intergenic	novelGene_3400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27882410	27882583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_27882400_27882600
PB_novel_18199_0	chr17	+	178	1	Intergenic	novelGene_3401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	28021506	28021684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_28021500_28021700
PB_novel_18211_0	chr17	+	176	1	Intergenic	novelGene_3402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAGAAAAGAAA	3265	False	NA	NA	False	NA	NA	NA	28283551	28283727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_28283600_28283700
PB_novel_18215_0	chr17	-	158	1	Intergenic	novelGene_3403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	28312913	28312755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_28312800_28312900
PB_novel_18221_0	chr17	+	178	1	Intergenic	novelGene_3404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATTAAAAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28406469	28406647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_28406500_28406600
PB_novel_18222_0	chr17	-	183	1	Intergenic	novelGene_3405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACATACCC	513	False	NA	NA	False	NA	NA	NA	28418001	28417818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_28417800_28418000
PB_novel_18226_0	chr17	+	174	1	Intergenic	novelGene_3406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	28438372	28438546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_28438400_28438500
PB_novel_18230_0	chr17	-	172	1	Intergenic	novelGene_3407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2646	False	NA	NA	False	NA	NA	NA	28453003	28452831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_28452800_28453000
PB_novel_18237_1	chr17	-	178	1	Intergenic	novelGene_3408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGTGGG	6461	False	NA	NA	False	NA	NA	NA	28597099	28596921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_28596900_28597100
PB_novel_18245_0	chr17	+	176	1	Intergenic	novelGene_3409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	28667995	28668171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_28668000_28668200
PB_novel_18249_0	chr17	+	179	1	Intergenic	novelGene_3410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATGAAAAAAA	2675	False	NA	NA	False	NA	NA	NA	28695309	28695488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_28695300_28695500
PB_novel_18253_0	chr17	-	180	1	Intergenic	novelGene_3412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAATAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	28778352	28778172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_28778200_28778400
PB_novel_18254_0	chr17	-	153	1	Intergenic	novelGene_3411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCTATGT	NA	False	NA	NA	False	NA	NA	NA	28755668	28755515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_28755500_28755700
PB_novel_18259_0	chr17	-	169	1	Intergenic	novelGene_3413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	28785162	28784993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_28785000_28785200
PB_novel_18260_0	chr17	+	169	1	Intergenic	novelGene_3414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28785480	28785649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_28785500_28785600
PB_novel_18261_0	chr17	-	175	1	Intergenic	novelGene_3415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGAGT	NA	False	NA	NA	False	NA	NA	NA	28786266	28786091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_28786100_28786300
PB_novel_18262_0	chr17	+	188	1	Intergenic	novelGene_3416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAAGA	4896	False	NA	NA	False	NA	NA	NA	28822638	28822826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_28822600_28822800
PB_novel_18264_0	chr17	+	188	1	Intergenic	novelGene_3417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	28843211	28843399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_28843200_28843400
PB_novel_18265_0	chr17	+	169	1	Intergenic	novelGene_3418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGTTTAAAAAAAAAAAAAG	2660	False	NA	NA	False	NA	NA	NA	28850638	28850807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_28850600_28850800
PB_novel_18275_0	chr17	-	176	1	Intergenic	novelGene_3419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAATAAATAAAT	4809	False	NA	NA	False	NA	NA	NA	29003304	29003128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_29003100_29003300
PB_novel_18289_0	chr17	-	176	1	Intergenic	novelGene_3420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAATTATTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29149210	29149034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_29149000_29149200
PB_novel_18292_0	chr17	-	851	1	Intergenic	novelGene_3421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAGAAAAAAAAAAAAAA	5367	False	NA	NA	False	NA	NA	NA	29178652	29177801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_29177800_29178700
PB_novel_18296_0	chr17	+	169	1	Intergenic	novelGene_3422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAATCAATCAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29212935	29213104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29212900_29213100
PB_novel_18301_0	chr17	+	97	1	Intergenic	novelGene_3423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACATTAAGGAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	29225368	29225465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29225400_29225500
PB_novel_18305_0	chr17	+	186	1	Intergenic	novelGene_3424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTCATTTAAAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	29242782	29242968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29242800_29243000
PB_novel_18311_0	chr17	-	1205	1	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5714	False	NA	NA	False	NA	NA	NA	29258416	29257211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_29257200_29258400
PB_novel_18312_0	chr17	-	173	1	Intergenic	novelGene_3425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAACCTGCTC	904	False	NA	NA	False	NA	NA	NA	29263226	29263053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_29263100_29263200
PB_novel_18320_0	chr17	-	1517	2	Antisense	novelGene_ENSMUSG00000023067.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29318922	29316899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_29317810_29318315
PB_novel_18320_1	chr17	-	2023	1	Antisense	novelGene_ENSMUSG00000023067.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29318922	29316899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_29316900_29318900
PB_novel_18322_0	chr17	-	176	1	Intergenic	novelGene_3426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTTAAAAAAAAAAAAAAA	3765	False	NA	NA	False	NA	NA	NA	29344156	29343980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_29344000_29344200
PB_novel_18329_0	chr17	+	176	1	Intergenic	novelGene_3427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAGAGAGACAGAAGG	NA	False	NA	NA	False	NA	NA	NA	29411794	29411970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29411800_29412000
PB_novel_18330_0	chr17	+	181	1	Intergenic	novelGene_3428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATGGATAA	NA	False	NA	NA	False	NA	NA	NA	29413746	29413927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29413700_29413900
PB_novel_18331_1	chr17	+	181	1	Intergenic	novelGene_3430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	354	False	NA	NA	False	NA	NA	NA	29492526	29492707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29492500_29492700
PB_novel_18332_0	chr17	+	179	1	Intergenic	novelGene_3429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAAAAAGAATATA	NA	False	NA	NA	False	NA	NA	NA	29415483	29415662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29415500_29415700
PB_novel_18338_0	chr17	+	180	1	Intergenic	novelGene_3431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	29572942	29573122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29572900_29573100
PB_novel_18352_0	chr17	+	157	1	Intergenic	novelGene_3432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	29707063	29707220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29707100_29707200
PB_novel_18357_0	chr17	+	206	1	Intergenic	novelGene_3433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAAAAACACAAA	2454	False	NA	NA	False	AATAAA	-10	NA	29771806	29772012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29771800_29772000
PB_novel_18358_0	chr17	-	174	1	Intergenic	novelGene_3434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATAACC	NA	False	NA	NA	False	NA	NA	NA	29780233	29780059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_29780100_29780200
PB_novel_18360_0	chr17	+	181	1	Intergenic	novelGene_3435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTAAAAAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	29793047	29793228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29793000_29793200
PB_novel_18362_1	chr17	-	178	1	Intergenic	novelGene_3436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAAAAAAGAT	9569	False	NA	NA	False	NA	NA	NA	29832779	29832601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_29832600_29832800
PB_novel_18363_0	chr17	-	158	1	Intergenic	novelGene_3437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	3226	False	NA	NA	False	NA	NA	NA	29849529	29849371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_29849400_29849500
PB_novel_18364_0	chr17	-	131	1	Intergenic	novelGene_3438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	1285	False	NA	NA	False	NA	NA	NA	29851470	29851339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_29851300_29851500
PB_novel_18367_0	chr17	+	153	1	Intergenic	novelGene_3439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAATTTGAAAGT	NA	False	NA	NA	False	NA	NA	NA	29875122	29875275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_29875100_29875300
PB_novel_18385_0	chr17	+	136	1	Intergenic	novelGene_3440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30219801	30219937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_30219800_30219900
PB_novel_18387_0	chr17	-	176	1	Intergenic	novelGene_3441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTTTTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	30245544	30245368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_30245400_30245500
PB_novel_18398_0	chr17	-	176	1	Intergenic	novelGene_3442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30863910	30863734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_30863700_30863900
PB_novel_18399_0	chr17	+	320	1	Antisense	novelGene_ENSMUSG00000024026.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30815477	30815797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_30815500_30815800
PB_novel_18405_1	chr17	-	1209	2	NNC	ENSMUSG00000099474.2	novel	845	4	NA	NA	-790	-3818	at_least_one_novel_splicesite	FALSE	canonical	3	186	junction_1	0	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAATAATAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	30846669	30845232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_-_30846170_30846397
PB_novel_18413_0	chr17	-	617	1	Intergenic	novelGene_3443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31092914	31092297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_31092300_31092900
PB_novel_18415_0	chr17	+	197	1	Intergenic	novelGene_3444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31233300	31233497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_31233300_31233500
PB_novel_18416_0	chr17	-	782	1	Antisense	novelGene_ENSMUSG00000024030.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31334287	31333505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_31333500_31334300
PB_novel_18425_0	chr17	-	176	1	Antisense	novelGene_ENSMUSG00000024036.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31526643	31526467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_31526500_31526600
PB_novel_18431_0	chr17	-	171	1	Intergenic	novelGene_3445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATAAATCTTTAATAATA	9527	False	NA	NA	False	NA	NA	NA	31668992	31668821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_31668800_31669000
PB_novel_18442_0	chr17	-	161	1	Intergenic	novelGene_3446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAATAAATAAAAAAAA	9148	False	NA	NA	False	NA	NA	NA	31861884	31861723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_31861700_31861900
PB_novel_18444_0	chr17	+	1158	1	Antisense	novelGene_ENSMUSG00000061613.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	31872750	31873908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_31872800_31873900
PB_novel_18446_0	chr17	-	177	1	Intergenic	novelGene_3447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATTAG	NA	False	NA	NA	False	NA	NA	NA	31874394	31874217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_31874200_31874400
PB_novel_18449_0	chr17	-	177	1	Intergenic	novelGene_3448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTTCTAAAAAAAAAAAA	2064	False	NA	NA	False	NA	NA	NA	31903796	31903619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_31903600_31903800
PB_novel_18451_0	chr17	-	199	1	Intergenic	novelGene_3449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCTCACTCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31916394	31916195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_31916200_31916400
PB_novel_18464_0	chr17	+	4005	1	Intergenic	novelGene_3450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAAGAAAGA	4297	False	NA	NA	False	NA	NA	NA	32056132	32060137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_32056100_32060100
PB_novel_18467_0	chr17	-	3048	1	NIC	ENSMUSG00000024042.8	novel	4521	14	NA	NA	495	-716	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32074272	32071224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32071200_32074300
PB_novel_18477_0	chr17	+	172	1	Intergenic	novelGene_3451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32353854	32354026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_32353900_32354000
PB_novel_18480_0	chr17	-	169	1	Intergenic	novelGene_3452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATTAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	32448216	32448047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_32448000_32448200
PB_novel_18486_0	chr17	+	2534	1	Antisense	novelGene_ENSMUSG00000024002.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32488872	32491406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_32488900_32491400
PB_novel_18487_0	chr17	-	1137	1	NIC	ENSMUSG00000024002.19	novel	5957	20	NA	NA	2	-9117	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	32503069	32501932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32501900_32503100
PB_novel_18489_1	chr17	-	139	1	Intergenic	novelGene_3454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	9220	False	NA	NA	False	NA	NA	NA	32514853	32514714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_32514700_32514900
PB_novel_18493_0	chr17	-	177	1	Intergenic	novelGene_3455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAACCACATAACC	4077	False	NA	NA	False	NA	NA	NA	32519996	32519819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_32519800_32520000
PB_novel_18495_0	chr17	-	1341	1	NIC	ENSMUSG00000024045.7	novel	3731	14	NA	NA	-4	-2585	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32540082	32538741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_32538700_32540100
PB_novel_18505_0	chr17	+	171	1	Intergenic	novelGene_3456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAATGGGGTA	NA	False	NA	NA	False	NA	NA	NA	32951378	32951549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_32951400_32951500
PB_novel_18519_0	chr17	+	176	1	NIC	ENSMUSG00000117601.2	novel	438	2	NA	NA	194	-714	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATATTTAAAAAAAAAG	5917	False	NA	14	True	NA	NA	NA	33098388	33098564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_33098400_33098600
PB_novel_18526_0	chr17	+	171	1	Intergenic	novelGene_3457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATATGAGTGGAC	NA	False	NA	NA	False	NA	NA	NA	33211017	33211188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_33211000_33211200
PB_novel_18545_0	chr17	+	169	1	Intergenic	novelGene_3458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAATGTCAAGAATT	NA	False	NA	NA	False	NA	NA	NA	33991996	33992165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_33992000_33992200
PB_novel_18549_0	chr17	-	176	1	Intergenic	novelGene_3459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	416	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAAAGT	8769	False	NA	NA	False	NA	NA	NA	34019291	34019115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_34019100_34019300
PB_novel_18562_0	chr17	+	161	1	Intergenic	novelGene_3460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	510	False	NA	NA	False	NA	NA	NA	34120418	34120579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_34120400_34120600
PB_novel_18574_0	chr17	+	167	1	Intergenic	novelGene_3461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAATCTTAAAAAAA	1450	False	NA	NA	False	NA	NA	NA	34327118	34327285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_34327100_34327300
PB_novel_18586_0	chr17	-	169	1	Intergenic	novelGene_3462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATATTAAAAAAGGAAT	NA	False	NA	NA	False	NA	NA	NA	34774237	34774068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_34774100_34774200
PB_novel_18591_0	chr17	+	177	1	Intergenic	novelGene_3463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACTT	5171	False	NA	NA	False	NA	NA	NA	35009882	35010059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_35009900_35010100
PB_novel_18594_0	chr17	+	251	1	Intergenic	novelGene_3464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAACAAAAAAAACA	5317	False	NA	-22	True	NA	NA	NA	35116091	35116342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_35116100_35116300
PB_novel_18595_0	chr17	-	302	1	Intergenic	novelGene_3465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAATAAATAAATCTTTA	8310	False	NA	NA	False	NA	NA	NA	35123488	35123186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35123200_35123500
PB_novel_18596_0	chr17	+	175	1	Intergenic	novelGene_3466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAAAAAAGCTTT	1663	False	NA	NA	False	NA	NA	NA	35143968	35144143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_35144000_35144100
PB_novel_18598_0	chr17	+	176	1	Intergenic	novelGene_3467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35157916	35158092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_35157900_35158100
PB_novel_18603_0	chr17	-	159	1	Intergenic	novelGene_3468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAAATTTAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	35208630	35208471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35208500_35208600
PB_novel_18607_0	chr17	-	175	1	Intergenic	novelGene_3469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACTAGAAAGAG	5279	False	NA	NA	False	NA	NA	NA	35214324	35214149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35214100_35214300
PB_novel_18609_0	chr17	+	174	1	Intergenic	novelGene_3470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAACAGACAGATAT	2506	False	NA	NA	False	NA	NA	NA	35222812	35222986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_35222800_35223000
PB_novel_18610_0	chr17	-	178	1	Intergenic	novelGene_3471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9896	False	NA	NA	False	NA	NA	NA	35225341	35225163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35225200_35225300
PB_novel_18612_0	chr17	-	183	1	Intergenic	novelGene_3472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9482	False	NA	NA	False	NA	NA	NA	35254604	35254421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35254400_35254600
PB_novel_18616_0	chr17	-	177	1	Intergenic	novelGene_3473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAGGCATTTA	NA	False	NA	NA	False	NA	NA	NA	35305358	35305181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35305200_35305400
PB_novel_18618_0	chr17	+	174	1	Intergenic	novelGene_3474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35335790	35335964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_35335800_35336000
PB_novel_18621_0	chr17	+	3974	1	Genic_Genomic	ENSMUSG00000024392.18	novel	NA	NA	NA	NA	791	3819	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	7164	False	NA	NA	False	NA	NA	NA	35366143	35370117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_+_35366100_35370100
PB_novel_18626_0	chr17	+	185	1	Intergenic	novelGene_3475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	6252	False	NA	NA	False	NA	NA	NA	35400350	35400535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_35400400_35400500
PB_novel_18630_0	chr17	-	190	1	Intergenic	novelGene_3476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	35411327	35411137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35411100_35411300
PB_novel_18634_0	chr17	-	4201	2	Antisense	novelGene_ENSMUSG00000098269.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	2	19	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35471703	35467288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_35470613_35470826
PB_novel_18635_0	chr17	-	1058	1	Intergenic	novelGene_3477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35471707	35470649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35470600_35471700
PB_novel_18638_0	chr17	+	165	1	Intergenic	novelGene_3478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAATACTTAAAAA	8311	False	NA	NA	False	NA	NA	NA	35525577	35525742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_35525600_35525700
PB_novel_18644_0	chr17	+	177	1	Intergenic	novelGene_3479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGACCA	NA	False	NA	NA	False	NA	NA	NA	35635653	35635830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_35635700_35635800
PB_novel_18645_0	chr17	-	233	1	Intergenic	novelGene_3480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	35656308	35656075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35656100_35656300
PB_novel_18647_0	chr17	+	178	1	Intergenic	novelGene_3481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACCAC	NA	False	NA	NA	False	NA	NA	NA	35680859	35681037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_35680900_35681000
PB_novel_18648_0	chr17	-	179	1	Intergenic	novelGene_3482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAACCAAACAAACA	8271	False	NA	NA	False	NA	NA	NA	35735848	35735669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35735700_35735800
PB_novel_18649_0	chr17	-	232	1	Intergenic	novelGene_3483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	35750239	35750007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35750000_35750200
PB_novel_18651_0	chr17	+	179	1	Intergenic	novelGene_3484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGACCACAGC	NA	False	NA	NA	False	NA	NA	NA	35772784	35772963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_35772800_35773000
PB_novel_18652_0	chr17	-	177	1	Intergenic	novelGene_3485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATTCATATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	35798637	35798460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35798500_35798600
PB_novel_18653_1	chr17	-	170	1	Intergenic	novelGene_3486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	553	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTTTTTAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35800526	35800356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35800400_35800500
PB_novel_18656_0	chr17	-	177	1	Intergenic	novelGene_3487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAACC	NA	False	NA	NA	False	NA	NA	NA	35807370	35807193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35807200_35807400
PB_novel_18657_0	chr17	-	151	1	Intergenic	novelGene_3488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGCAAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	35807728	35807577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35807600_35807700
PB_novel_18658_0	chr17	-	175	1	Intergenic	novelGene_3489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATTTAT	NA	False	NA	NA	False	NA	NA	NA	35808672	35808497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35808500_35808700
PB_novel_18665_1	chr17	-	1600	2	Antisense	novelGene_ENSMUSG00000040312.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAATAAATAAA	5205	False	NA	NA	False	NA	NA	NA	35836142	35834478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_35834622_35834685
PB_novel_18675_0	chr17	-	168	1	Intergenic	novelGene_3490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTTAAAAAAACCATTAAC	NA	False	NA	NA	False	NA	NA	NA	35940633	35940465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_35940500_35940600
PB_novel_18679_0	chr17	-	148	1	Intergenic	novelGene_3491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTAAAAAAAAGAAAAAAGA	7343	False	NA	NA	False	NA	NA	NA	36025369	36025221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_36025200_36025400
PB_novel_18683_0	chr17	-	161	1	Intergenic	novelGene_3492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATCTTTAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	36096577	36096416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_36096400_36096600
PB_novel_18692_0	chr17	+	175	1	Intergenic	novelGene_3493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	36182687	36182862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_36182700_36182900
PB_novel_18694_0	chr17	-	176	1	Intergenic	novelGene_3494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGC	2171	False	NA	NA	False	NA	NA	NA	36188070	36187894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_36187900_36188100
PB_novel_18697_0	chr17	-	176	1	Intergenic	novelGene_3495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36205458	36205282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_36205300_36205500
PB_novel_18699_0	chr17	+	180	1	Intergenic	novelGene_3496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAATAAATAAGCAA	NA	False	NA	NA	False	NA	NA	NA	36209700	36209880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_36209700_36209900
PB_novel_18702_0	chr17	-	3308	1	Intergenic	novelGene_3497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAACAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36233466	36230158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_36230200_36233500
PB_novel_18705_0	chr17	+	174	1	Intergenic	novelGene_3498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAAATGAACTTA	NA	False	NA	NA	False	NA	NA	NA	36266213	36266387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_36266200_36266400
PB_novel_18708_0	chr17	+	114	1	Intergenic	novelGene_3499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAGATA	NA	False	NA	NA	False	AGTAAA	-5	NA	36310529	36310643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_36310500_36310600
PB_novel_18711_0	chr17	+	175	1	Intergenic	novelGene_3500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	36347651	36347826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_36347700_36347800
PB_novel_18716_0	chr17	-	170	1	Intergenic	novelGene_3501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAACAAACAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	36397044	36396874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_36396900_36397000
PB_novel_18721_0	chr17	+	164	1	Antisense	novelGene_ENSMUSG00000073403.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36453686	36453850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_36453700_36453800
PB_novel_18723_0	chr17	+	175	1	Intergenic	novelGene_3502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36517556	36517731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_36517600_36517700
PB_novel_18728_0	chr17	-	161	1	Antisense	novelGene_ENSMUSG00000092392.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATACATAAATCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36564077	36563916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_36563900_36564100
PB_novel_18730_0	chr17	-	3186	1	Genic_Genomic	ENSMUSG00000024446.14	novel	NA	NA	NA	NA	5	980	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36568742	36565556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_36565600_36568700
PB_novel_18748_0	chr17	-	1963	1	Antisense	novelGene_ENSMUSG00000036036.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37316539	37314576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_37314600_37316500
PB_novel_18749_0	chr17	-	2145	3	Antisense	novelGene_ENSMUSG00000036036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37321091	37314576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_37315794_37316939_37317086_37320309
PB_novel_18749_1	chr17	-	2136	3	Antisense	novelGene_ENSMUSG00000036036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37321091	37314576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_37315793_37316947_37317086_37320309
PB_novel_18749_3	chr17	-	3291	2	Antisense	novelGene_ENSMUSG00000036036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37321091	37314576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_37317086_37320309
PB_novel_18760_0	chr17	-	190	1	Intergenic	novelGene_3503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	9860	False	NA	NA	False	NA	NA	NA	37473388	37473198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_37473200_37473400
PB_novel_18768_0	chr17	-	4038	1	Intergenic	novelGene_3504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGACAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38313571	38309533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_38309500_38313600
PB_novel_18777_0	chr17	+	178	1	Intergenic	novelGene_3505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	40159792	40159970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_40159800_40160000
PB_novel_18784_0	chr17	-	176	1	Intergenic	novelGene_3506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	41057691	41057515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_41057500_41057700
PB_novel_18785_0	chr17	-	164	1	Intergenic	novelGene_3507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41226854	41226690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_41226700_41226900
PB_novel_18795_0	chr17	+	2778	1	Intergenic	novelGene_3508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43175257	43178035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_43175300_43178000
PB_novel_18797_0	chr17	-	175	1	Intergenic	novelGene_3509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43192528	43192353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_43192400_43192500
PB_novel_18798_0	chr17	-	178	1	Intergenic	novelGene_3510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAATAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	43248503	43248325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_43248300_43248500
PB_novel_18801_0	chr17	-	174	1	Intergenic	novelGene_3511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAATAATAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	43264283	43264109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_43264100_43264300
PB_novel_18813_2	chr17	-	3063	3	Antisense	novelGene_ENSMUSG00000023963.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATGAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43993541	43978285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_43978684_43987719_43987856_43991012
PB_novel_18814_0	chr17	-	308	1	Antisense	novelGene_ENSMUSG00000023963.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATGAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43978593	43978285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_43978300_43978600
PB_novel_18819_0	chr17	-	1707	1	Intergenic	novelGene_3512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAGCAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	45092573	45090866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_45090900_45092600
PB_novel_18821_0	chr17	+	6486	1	Antisense	novelGene_ENSMUSG00000039153.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACGAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	45125574	45132060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_45125600_45132100
PB_novel_18837_1	chr17	+	5491	2	Intergenic	novelGene_3513	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	45730802	45791130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_45736118_45790954
PB_novel_18842_0	chr17	-	167	1	Intergenic	novelGene_3514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATCTTTAAAAAAAAAAAA	7700	False	NA	NA	False	NA	NA	NA	45821167	45821000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_45821000_45821200
PB_novel_18850_0	chr17	-	303	1	Intergenic	novelGene_3515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45925601	45925298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_45925300_45925600
PB_novel_18851_1	chr17	+	177	1	Intergenic	novelGene_3516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45948209	45948386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_45948200_45948400
PB_novel_18853_0	chr17	-	177	1	Intergenic	novelGene_3517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	45988594	45988417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_45988400_45988600
PB_novel_18860_0	chr17	+	274	1	Intergenic	novelGene_3518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CATATACATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	46074727	46075001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_46074700_46075000
PB_novel_18865_0	chr17	-	326	1	Intergenic	novelGene_3519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAACTTTTGAAAAA	8685	False	NA	NA	False	NA	NA	NA	46144845	46144519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_46144500_46144800
PB_novel_18872_0	chr17	+	175	1	Intergenic	novelGene_3520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5699	False	NA	NA	False	NA	NA	NA	46416590	46416765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_46416600_46416800
PB_novel_18875_0	chr17	+	1151	1	NIC	ENSMUSG00000023967.10	novel	884	6	NA	NA	13	-10968	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46421934	46423085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_46421900_46423100
PB_novel_18877_0	chr17	+	168	1	Intergenic	novelGene_3521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTAAAAAAAATAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	46466177	46466345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_46466200_46466300
PB_novel_18880_0	chr17	+	175	1	Intergenic	novelGene_3522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46485870	46486045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_46485900_46486000
PB_novel_18883_0	chr17	-	182	1	Intergenic	novelGene_3523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACAAATCAG	NA	False	NA	NA	False	NA	NA	NA	46496280	46496098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_46496100_46496300
PB_novel_18894_0	chr17	-	175	1	Intergenic	novelGene_3524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAGTGTAA	NA	False	NA	NA	False	NA	NA	NA	46739198	46739023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_46739000_46739200
PB_novel_18897_0	chr17	-	176	1	Intergenic	novelGene_3525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAGAAA	2037	False	NA	NA	False	NA	NA	NA	46750163	46749987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_46750000_46750200
PB_novel_18898_0	chr17	+	169	1	Intergenic	novelGene_3526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	46846813	46846982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_46846800_46847000
PB_novel_18899_0	chr17	-	177	1	Intergenic	novelGene_3527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	46847457	46847280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_46847300_46847500
PB_novel_18902_0	chr17	+	172	1	Intergenic	novelGene_3528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	46869875	46870047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_46869900_46870000
PB_novel_18905_0	chr17	+	115	1	Intergenic	novelGene_3529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAATAAAATA	9278	False	NA	NA	False	NA	NA	NA	46919771	46919886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_46919800_46919900
PB_novel_18907_0	chr17	-	181	1	NIC	ENSMUSG00000023971.10	novel	2274	7	NA	NA	6816	199	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	46978365	46978184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_46978200_46978400
PB_novel_18908_0	chr17	+	191	1	Intergenic	novelGene_3530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAAAAAATTAAAATG	NA	False	NA	NA	False	NA	NA	NA	47003746	47003937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_47003700_47003900
PB_novel_18910_0	chr17	-	178	1	Intergenic	novelGene_3531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAGAAAAGTGGAA	NA	False	NA	NA	False	NA	NA	NA	47021926	47021748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_47021700_47021900
PB_novel_18915_0	chr17	+	2912	4	Antisense	novelGene_ENSMUSG00000063888.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47085022	47091147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_47086662_47088971_47089197_47089334_47089446_47090210
PB_novel_18915_1	chr17	+	3676	3	Antisense	novelGene_ENSMUSG00000063888.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47085022	47091146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_47086662_47088971_47089197_47089334
PB_novel_18915_3	chr17	+	2901	4	Antisense	novelGene_ENSMUSG00000063888.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47085022	47091141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_47086661_47088975_47089197_47089334_47089446_47090210
PB_novel_18917_0	chr17	+	957	1	Antisense	novelGene_ENSMUSG00000063888.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47090184	47091141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_47090200_47091100
PB_novel_18919_0	chr17	+	269	1	Intergenic	novelGene_3532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAATAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	47094669	47094938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_47094700_47094900
PB_novel_18921_0	chr17	+	181	1	Intergenic	novelGene_3533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47096110	47096291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_47096100_47096300
PB_novel_18922_0	chr17	+	148	1	Intergenic	novelGene_3534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAATTTAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47102581	47102729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_47102600_47102700
PB_novel_18931_0	chr17	-	3825	1	Intergenic	novelGene_3535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47168516	47164691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_47164700_47168500
PB_novel_18941_0	chr17	-	175	1	Intergenic	novelGene_3536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47315137	47314962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_47315000_47315100
PB_novel_18950_0	chr17	+	159	1	Intergenic	novelGene_3537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAAATAAATTATTTT	3657	False	NA	NA	False	NA	NA	NA	47472014	47472173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_47472000_47472200
PB_novel_18956_1	chr17	+	172	1	Intergenic	novelGene_3538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	6668	False	NA	NA	False	NA	NA	NA	47637189	47637361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_47637200_47637400
PB_novel_18963_0	chr17	+	171	1	Intergenic	novelGene_3539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	47785693	47785864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_47785700_47785900
PB_novel_18966_0	chr17	+	163	1	Intergenic	novelGene_3540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATAAATAAATAATATATA	NA	False	NA	NA	False	NA	NA	NA	47806643	47806806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_47806600_47806800
PB_novel_18967_0	chr17	+	173	1	Intergenic	novelGene_3542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	47847971	47848144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_47848000_47848100
PB_novel_18969_0	chr17	-	176	1	Intergenic	novelGene_3541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	928	False	NA	NA	False	NA	NA	NA	47810996	47810820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_47810800_47811000
PB_novel_18972_0	chr17	+	172	1	Intergenic	novelGene_3543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	47881326	47881498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_47881300_47881500
PB_novel_18974_0	chr17	+	165	1	Intergenic	novelGene_3544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATCTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47913910	47914075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_47913900_47914100
PB_novel_18978_0	chr17	-	180	1	Intergenic	novelGene_3545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47947206	47947026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_47947000_47947200
PB_novel_18980_0	chr17	-	185	1	Intergenic	novelGene_3546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-6	NA	47974098	47973913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_47973900_47974100
PB_novel_18987_0	chr17	-	175	1	Intergenic	novelGene_3547	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGGCCAG	NA	False	NA	NA	False	NA	NA	NA	48057774	48057599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_48057600_48057800
PB_novel_18996_0	chr17	+	176	1	Intergenic	novelGene_3548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAAGGTC	NA	False	NA	NA	False	NA	NA	NA	48222903	48223079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_48222900_48223100
PB_novel_18997_0	chr17	-	195	1	Intergenic	novelGene_3549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAGAAAACT	NA	False	NA	NA	False	NA	NA	NA	48240007	48239812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_48239800_48240000
PB_novel_18999_0	chr17	+	219	1	Intergenic	novelGene_3550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	327	False	NA	NA	False	NA	NA	NA	48248177	48248396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_48248200_48248400
PB_novel_19005_0	chr17	+	165	1	Intergenic	novelGene_3551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	48652054	48652219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_48652100_48652200
PB_novel_19022_0	chr17	+	3180	1	NIC	ENSMUSG00000064120.15	novel	729	4	NA	NA	20	-3969	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	49735411	49738591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_+_49735400_49738600
PB_novel_19031_0	chr17	+	182	1	Intergenic	novelGene_3552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAACCATACACTTTA	6327	False	NA	NA	False	NA	NA	NA	50602824	50603006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_50602800_50603000
PB_novel_19033_0	chr17	+	172	1	Intergenic	novelGene_3553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50833648	50833820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_50833600_50833800
PB_novel_19039_0	chr17	-	176	1	Intergenic	novelGene_3554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGAATTTAAATC	NA	False	NA	NA	False	NA	NA	NA	51386019	51385843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_51385800_51386000
PB_novel_19046_0	chr17	-	165	1	Intergenic	novelGene_3555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52191110	52190945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_52190900_52191100
PB_novel_19048_0	chr17	-	177	1	Intergenic	novelGene_3556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	52964515	52964338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_52964300_52964500
PB_novel_19062_0	chr17	+	180	1	Intergenic	novelGene_3557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAACACT	NA	False	NA	NA	False	NA	NA	NA	53818534	53818714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_53818500_53818700
PB_novel_19071_0	chr17	+	161	1	Intergenic	novelGene_3558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	53865279	53865440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_53865300_53865400
PB_novel_19072_0	chr17	-	176	1	Intergenic	novelGene_3559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATATTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	53869714	53869538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_53869500_53869700
PB_novel_19073_0	chr17	-	118	1	Intergenic	novelGene_3560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTCTTGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53878351	53878233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_53878200_53878400
PB_novel_19076_0	chr17	-	139	1	Intergenic	novelGene_3561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAACACAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	53899894	53899755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_53899800_53899900
PB_novel_19079_0	chr17	-	137	1	Intergenic	novelGene_3562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATGT	NA	False	NA	NA	False	NA	NA	NA	53967529	53967392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_53967400_53967500
PB_novel_19086_0	chr17	+	167	1	Intergenic	novelGene_3563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	56002406	56002573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_56002400_56002600
PB_novel_19089_0	chr17	+	192	1	Intergenic	novelGene_3564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAGAATAGAA	NA	False	NA	NA	False	NA	NA	NA	56224187	56224379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_56224200_56224400
PB_novel_19095_0	chr17	+	180	1	Intergenic	novelGene_3565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATGATT	NA	False	NA	NA	False	NA	NA	NA	56315065	56315245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_56315100_56315200
PB_novel_19098_0	chr17	-	174	1	Intergenic	novelGene_3566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACAATGTT	NA	False	NA	NA	False	NA	NA	NA	56345135	56344961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_56345000_56345100
PB_novel_19100_0	chr17	-	176	1	Intergenic	novelGene_3567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	4963	False	NA	NA	False	NA	NA	NA	56383371	56383195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_56383200_56383400
PB_novel_19104_0	chr17	-	172	1	Intergenic	novelGene_3568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56398983	56398811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_56398800_56399000
PB_novel_19105_0	chr17	+	169	1	Intergenic	novelGene_3569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAGAATTGAGGTA	7248	False	NA	NA	False	NA	NA	NA	56400948	56401117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_56400900_56401100
PB_novel_19106_0	chr17	-	169	1	Intergenic	novelGene_3570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGATCA	NA	False	NA	NA	False	NA	NA	NA	56401983	56401814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_56401800_56402000
PB_novel_19107_0	chr17	-	214	1	Intergenic	novelGene_3571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	56402529	56402315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_56402300_56402500
PB_novel_19111_0	chr17	-	173	1	Intergenic	novelGene_3572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATTAAAAGGAAAGA	NA	False	NA	NA	False	NA	NA	NA	56526715	56526542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_56526500_56526700
PB_novel_19116_0	chr17	-	179	1	Intergenic	novelGene_3573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	521	False	NA	NA	False	NA	NA	NA	56570985	56570806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_56570800_56571000
PB_novel_19118_0	chr17	+	189	1	Intergenic	novelGene_3574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATAAACCCAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	56575672	56575861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_56575700_56575900
PB_novel_19119_0	chr17	+	175	1	Intergenic	novelGene_3575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGT	5701	False	NA	NA	False	NA	NA	NA	56590703	56590878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_56590700_56590900
PB_novel_19122_0	chr17	-	178	1	Intergenic	novelGene_3576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	1246	False	NA	NA	False	NA	NA	NA	56608750	56608572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_56608600_56608800
PB_novel_19124_1	chr17	-	3537	2	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAAAAGAGCAA	2541	False	NA	NA	False	NA	NA	NA	56624341	56620721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_56622314_56622396
PB_novel_19124_3	chr17	-	3620	1	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAAAAGAGCAA	2541	False	NA	NA	False	NA	NA	NA	56624341	56620721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_56620700_56624300
PB_novel_19124_4	chr17	-	3267	3	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAAAAGAGCAA	2541	False	NA	NA	False	NA	NA	NA	56624341	56620721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_56622314_56622396_56622505_56622774
PB_novel_19132_0	chr17	+	172	1	Intergenic	novelGene_3577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTAAAAAAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	56944015	56944187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_56944000_56944200
PB_novel_19134_1	chr17	-	177	1	Intergenic	novelGene_3578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTATTTTCTAAA	4493	False	NA	NA	False	NA	NA	NA	56977647	56977470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_56977500_56977600
PB_novel_19139_0	chr17	-	175	1	Intergenic	novelGene_3579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGGGAGGC	8200	False	NA	NA	False	NA	NA	NA	57073516	57073341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_57073300_57073500
PB_novel_19141_0	chr17	-	163	1	Intergenic	novelGene_3580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAATCTTAAAAAAAA	2316	False	NA	NA	False	NA	NA	NA	57085415	57085252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_57085300_57085400
PB_novel_19159_0	chr17	+	4117	1	Intergenic	novelGene_3581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57215869	57219986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_57215900_57220000
PB_novel_19162_0	chr17	+	177	1	Intergenic	novelGene_3582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTACT	8414	False	NA	NA	False	NA	NA	NA	57293777	57293954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_57293800_57294000
PB_novel_19166_0	chr17	-	171	1	Intergenic	novelGene_3583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	57325078	57324907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_57324900_57325100
PB_novel_19167_0	chr17	-	2908	1	NIC	ENSMUSG00000007670.11	novel	3978	18	NA	NA	1	-5075	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	AAAAAG	-18	NA	57338487	57335579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_57335600_57338500
PB_novel_19168_0	chr17	-	178	1	Intergenic	novelGene_3584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	57349468	57349290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_57349300_57349500
PB_novel_19170_0	chr17	-	175	1	Intergenic	novelGene_3585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAGCCACAC	NA	False	NA	NA	False	NA	NA	NA	57427323	57427148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_57427100_57427300
PB_novel_19171_0	chr17	+	184	1	Intergenic	novelGene_3586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGGAC	NA	False	NA	NA	False	NA	NA	NA	57584821	57585005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_57584800_57585000
PB_novel_19172_0	chr17	-	175	1	Intergenic	novelGene_3587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57607397	57607222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_57607200_57607400
PB_novel_19175_0	chr17	+	172	1	Intergenic	novelGene_3588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAGAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	58080190	58080362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_58080200_58080400
PB_novel_19178_0	chr17	-	191	1	Intergenic	novelGene_3589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACATGC	NA	False	NA	NA	False	NA	NA	NA	59421783	59421592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_59421600_59421800
PB_novel_19179_0	chr17	-	168	1	Intergenic	novelGene_3590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAATGAAAA	NA	False	NA	NA	False	NA	NA	NA	59996932	59996764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_59996800_59996900
PB_novel_19181_0	chr17	+	184	1	Intergenic	novelGene_3591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60761944	60762128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_60761900_60762100
PB_novel_19191_0	chr17	-	179	1	Intergenic	novelGene_3592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	63404721	63404542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_63404500_63404700
PB_novel_19200_0	chr17	-	177	1	Intergenic	novelGene_3593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATGAATGCCTG	NA	False	NA	NA	False	NA	NA	NA	63838994	63838817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_63838800_63839000
PB_novel_19212_0	chr17	-	163	1	Intergenic	novelGene_3594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAGATTCATCTTTA	NA	False	NA	NA	False	NA	NA	NA	64694191	64694028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_64694000_64694200
PB_novel_19214_0	chr17	-	2147	1	Antisense	novelGene_ENSMUSG00000024085.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAGA	-2	NA	65022573	65020426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_65020400_65022600
PB_novel_19215_0	chr17	+	176	1	Intergenic	novelGene_3595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65701826	65702002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_65701800_65702000
PB_novel_19217_0	chr17	+	176	1	Intergenic	novelGene_3596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGCTGCCAT	NA	False	NA	NA	False	NA	NA	NA	65837416	65837592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_65837400_65837600
PB_novel_19235_0	chr17	-	176	1	Intergenic	novelGene_3597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	66111995	66111819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66111800_66112000
PB_novel_19236_0	chr17	-	1923	1	Intergenic	novelGene_3598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAGA	-17	NA	66125977	66124054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66124100_66126000
PB_novel_19238_0	chr17	-	177	1	Intergenic	novelGene_3599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATGAGAC	NA	False	NA	NA	False	NA	NA	NA	66144617	66144440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66144400_66144600
PB_novel_19241_0	chr17	-	185	1	Intergenic	novelGene_3600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAACAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66177264	66177079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66177100_66177300
PB_novel_19244_0	chr17	+	177	1	Intergenic	novelGene_3601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTCTACTTGG	NA	False	NA	NA	False	NA	NA	NA	66197587	66197764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_66197600_66197800
PB_novel_19245_0	chr17	+	156	1	Intergenic	novelGene_3602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTAAAAAAAAATAAGAC	NA	False	NA	NA	False	NA	NA	NA	66205195	66205351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_66205200_66205400
PB_novel_19246_0	chr17	-	176	1	Intergenic	novelGene_3603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAGAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	66252128	66251952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66252000_66252100
PB_novel_19250_0	chr17	+	179	1	Intergenic	novelGene_3604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAATGTTAACTATAA	NA	False	NA	NA	False	NA	NA	NA	66352400	66352579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_66352400_66352600
PB_novel_19257_0	chr17	-	177	1	Intergenic	novelGene_3605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGGCTCACA	8839	False	NA	NA	False	NA	NA	NA	66410859	66410682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66410700_66410900
PB_novel_19261_3	chr17	-	177	1	Intergenic	novelGene_3606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2117	False	NA	NA	False	NA	NA	NA	66493339	66493162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66493200_66493300
PB_novel_19266_0	chr17	-	178	1	Intergenic	novelGene_3607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	66635977	66635799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66635800_66636000
PB_novel_19273_2	chr17	+	1892	3	Antisense	novelGene_ENSMUSG00000052105.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATGTCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	66677326	66679492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_66677335_66677423_66679266_66679450
PB_novel_19274_0	chr17	+	5717	1	Antisense	novelGene_ENSMUSG00000052105.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66677458	66683175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_66677500_66683200
PB_novel_19276_0	chr17	+	174	1	Intergenic	novelGene_3608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66687744	66687918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_66687700_66687900
PB_novel_19278_0	chr17	+	176	1	Intergenic	novelGene_3609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACTTCA	NA	False	NA	NA	False	NA	NA	NA	66738915	66739091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_66738900_66739100
PB_novel_19281_0	chr17	+	167	1	Intergenic	novelGene_3610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAAAGAAATGGA	NA	False	NA	NA	False	NA	NA	NA	66762360	66762527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_66762400_66762500
PB_novel_19285_0	chr17	-	175	1	Intergenic	novelGene_3611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAAAAGTAGGGTCTG	NA	False	NA	NA	False	NA	NA	NA	66766997	66766822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66766800_66767000
PB_novel_19286_0	chr17	+	184	1	Intergenic	novelGene_3612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66774219	66774403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_66774200_66774400
PB_novel_19288_0	chr17	-	2043	1	Intergenic	novelGene_3613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66791041	66788998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66789000_66791000
PB_novel_19290_0	chr17	-	173	1	Intergenic	novelGene_3614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66809859	66809686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66809700_66809900
PB_novel_19293_0	chr17	-	165	1	Intergenic	novelGene_3615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCTTTGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66822896	66822731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66822700_66822900
PB_novel_19296_0	chr17	+	177	1	Intergenic	novelGene_3616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	66899503	66899680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_66899500_66899700
PB_novel_19297_0	chr17	-	177	1	Intergenic	novelGene_3617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACATAGAA	NA	False	NA	NA	False	NA	NA	NA	66915445	66915268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_66915300_66915400
PB_novel_19305_0	chr17	+	166	1	Intergenic	novelGene_3618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATCTTTAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	68209325	68209491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_68209300_68209500
PB_novel_19310_0	chr17	-	2235	1	Intergenic	novelGene_3619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8365	False	NA	NA	False	NA	NA	NA	69266238	69264003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_69264000_69266200
PB_novel_19321_0	chr17	-	179	1	Intergenic	novelGene_3620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	187	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	70136101	70135922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_70135900_70136100
PB_novel_19330_0	chr17	+	185	1	Antisense	novelGene_ENSMUSG00000097282.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCTTTAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	71053169	71053354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_71053200_71053400
PB_novel_19331_0	chr17	+	533	1	Antisense	novelGene_ENSMUSG00000097282.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71058320	71058853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_71058300_71058900
PB_novel_19332_0	chr17	+	172	1	Intergenic	novelGene_3621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	265	False	NA	NA	False	NA	NA	NA	71064369	71064541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_71064400_71064500
PB_novel_19337_0	chr17	+	172	1	Intergenic	novelGene_3622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGGTTTAAG	NA	False	NA	NA	False	NA	NA	NA	71085348	71085520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_71085300_71085500
PB_novel_19339_0	chr17	-	176	1	Intergenic	novelGene_3623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	71090131	71089955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_71090000_71090100
PB_novel_19341_0	chr17	+	160	1	Intergenic	novelGene_3624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATCTAAAAAA	3050	False	NA	NA	False	NA	NA	NA	71093421	71093581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_71093400_71093600
PB_novel_19342_0	chr17	-	180	1	Intergenic	novelGene_3625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTTA	NA	False	NA	NA	False	NA	NA	NA	71099475	71099295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_71099300_71099500
PB_novel_19344_0	chr17	-	175	1	Intergenic	novelGene_3626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	71104448	71104273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_71104300_71104400
PB_novel_19352_0	chr17	+	591	1	Intergenic	novelGene_3627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	6412	False	NA	NA	False	NA	NA	NA	71147790	71148381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_71147800_71148400
PB_novel_19354_0	chr17	+	4220	1	Antisense	novelGene_ENSMUSG00000047407.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-10	NA	71153131	71157351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_71153100_71157400
PB_novel_19356_0	chr17	-	175	1	Intergenic	novelGene_3628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAATCTAAGAATT	NA	False	NA	NA	False	NA	NA	NA	71162754	71162579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_71162600_71162800
PB_novel_19359_0	chr17	-	160	1	Intergenic	novelGene_3629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71174230	71174070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_71174100_71174200
PB_novel_19363_0	chr17	-	183	1	Intergenic	novelGene_3630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAATATACAAATAAG	NA	False	NA	NA	False	NA	NA	NA	71213423	71213240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_71213200_71213400
PB_novel_19364_0	chr17	+	176	1	Intergenic	novelGene_3631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	71235640	71235816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_71235600_71235800
PB_novel_19365_0	chr17	-	175	1	Intergenic	novelGene_3632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8565	False	NA	NA	False	NA	NA	NA	71292364	71292189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_71292200_71292400
PB_novel_19370_0	chr17	-	175	1	Intergenic	novelGene_3633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATAAAAAAAAATGACAAGA	NA	False	NA	NA	False	NA	NA	NA	71342875	71342700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_71342700_71342900
PB_novel_19374_0	chr17	+	171	1	Intergenic	novelGene_3634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71695973	71696144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_71696000_71696100
PB_novel_19378_0	chr17	+	164	1	Intergenic	novelGene_3635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACTTT	2579	False	NA	NA	False	NA	NA	NA	71789795	71789959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_71789800_71790000
PB_novel_19381_0	chr17	+	177	1	Intergenic	novelGene_3636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	71842811	71842988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_71842800_71843000
PB_novel_19385_0	chr17	-	176	1	Intergenic	novelGene_3637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAACTAACTCT	NA	False	NA	NA	False	NA	NA	NA	71935996	71935820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_71935800_71936000
PB_novel_19387_0	chr17	-	183	1	Intergenic	novelGene_3638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGTAACAAATATTCTTT	NA	False	NA	NA	False	NA	NA	NA	71946181	71945998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_71946000_71946200
PB_novel_19389_0	chr17	-	2426	2	Antisense	novelGene_ENSMUSG00000041057.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71963646	71961050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_71963056_71963225
PB_novel_19391_0	chr17	-	174	1	Intergenic	novelGene_3639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAGAAAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	71995327	71995153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_71995200_71995300
PB_novel_19396_0	chr17	-	2238	2	Intergenic	novelGene_3640	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73314409	73311547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_73313739_73314362
PB_novel_19397_0	chr17	+	175	1	Intergenic	novelGene_3641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73422780	73422955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_73422800_73423000
PB_novel_19402_0	chr17	+	177	1	Intergenic	novelGene_3642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74447817	74447994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_74447800_74448000
PB_novel_19405_0	chr17	+	178	1	Antisense	novelGene_ENSMUSG00000117113.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	7667	False	NA	NA	False	NA	NA	NA	74497292	74497470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_74497300_74497500
PB_novel_19408_0	chr17	+	178	1	Intergenic	novelGene_3643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGACTTC	NA	False	NA	NA	False	NA	NA	NA	74515496	74515674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_74515500_74515700
PB_novel_19409_0	chr17	-	2917	1	Antisense	novelGene_ENSMUSG00000117262.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	7743	False	NA	NA	False	AGTAAA	-13	NA	74520341	74517424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_74517400_74520300
PB_novel_19410_0	chr17	+	170	1	Intergenic	novelGene_3644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTATAGATTATTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74593654	74593824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_74593700_74593800
PB_novel_19411_0	chr17	+	177	1	Intergenic	novelGene_3645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTAAAAAAGGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	74596404	74596581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_74596400_74596600
PB_novel_19417_0	chr17	-	176	1	Intergenic	novelGene_3646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAACAC	NA	False	NA	NA	False	NA	NA	NA	74625708	74625532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_74625500_74625700
PB_novel_19425_0	chr17	-	177	1	Intergenic	novelGene_3647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAAAAATAG	NA	False	NA	NA	False	NA	NA	NA	74708256	74708079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_74708100_74708300
PB_novel_19435_0	chr17	+	170	1	Intergenic	novelGene_3648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTTAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	74791577	74791747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_74791600_74791700
PB_novel_19441_0	chr17	-	167	1	Intergenic	novelGene_3649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATGTATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74823189	74823022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_74823000_74823200
PB_novel_19444_1	chr17	+	2516	2	NNC	ENSMUSG00000024073.17	novel	2804	6	NA	NA	-36	-18093	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAAACCAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	74835426	74838010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr17_+_74837672_74837739
PB_novel_19445_0	chr17	-	173	1	Intergenic	novelGene_3650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	74839561	74839388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_74839400_74839600
PB_novel_19447_0	chr17	-	176	1	Intergenic	novelGene_3651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74847538	74847362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_74847400_74847500
PB_novel_19448_0	chr17	-	169	1	Intergenic	novelGene_3652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	74863077	74862908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_74862900_74863100
PB_novel_19451_0	chr17	+	169	1	Intergenic	novelGene_3653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAACCCTAATAGATTT	NA	False	NA	NA	False	NA	NA	NA	74996548	74996717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_74996500_74996700
PB_novel_19453_0	chr17	+	174	1	Intergenic	novelGene_3654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATCTTTAAAAAAAAAAA	5547	False	NA	NA	False	NA	NA	NA	75011362	75011536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_75011400_75011500
PB_novel_19456_1	chr17	-	3532	2	Antisense	novelGene_ENSMUSG00000024078.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-21	NA	75075949	75065203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_75066059_75073272
PB_novel_19459_0	chr17	+	171	1	Intergenic	novelGene_3655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	639	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	75268938	75269109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_75268900_75269100
PB_novel_19465_0	chr17	-	920	1	NIC	ENSMUSG00000002017.11	novel	2817	8	NA	NA	-1	-6488	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75858869	75857949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_75857900_75858900
PB_novel_19466_0	chr17	+	175	1	Intergenic	novelGene_3656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAATGGAAG	NA	False	NA	NA	False	NA	NA	NA	77578913	77579088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_77578900_77579100
PB_novel_19468_0	chr17	+	177	1	Intergenic	novelGene_3657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATGT	NA	False	NA	NA	False	NA	NA	NA	78477873	78478050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_78477900_78478000
PB_novel_19470_0	chr17	+	157	1	Intergenic	novelGene_3658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	78699238	78699395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_78699200_78699400
PB_novel_19480_0	chr17	-	141	1	Intergenic	novelGene_3659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAACTC	NA	False	NA	NA	False	NA	NA	NA	79073069	79072928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_79072900_79073100
PB_novel_19514_0	chr17	-	324	1	Intergenic	novelGene_3660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATACAAAAA	NA	False	NA	NA	False	NA	NA	NA	80323984	80323660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_80323700_80324000
PB_novel_19515_0	chr17	-	175	1	Intergenic	novelGene_3661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80363065	80362890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_80362900_80363100
PB_novel_19517_0	chr17	+	180	1	Intergenic	novelGene_3662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAGAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	80421306	80421486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_80421300_80421500
PB_novel_19518_0	chr17	-	178	1	Intergenic	novelGene_3663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	80427918	80427740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_80427700_80427900
PB_novel_19521_0	chr17	+	173	1	Intergenic	novelGene_3664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACAAAAAGAATCAC	NA	False	NA	NA	False	NA	NA	NA	80493695	80493868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_80493700_80493900
PB_novel_19522_0	chr17	+	171	1	Intergenic	novelGene_3665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAGAAAATG	NA	False	NA	NA	False	NA	NA	NA	80498394	80498565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_80498400_80498600
PB_novel_19536_0	chr17	+	173	1	Intergenic	novelGene_3666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAGTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80584097	80584270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_80584100_80584300
PB_novel_19537_0	chr17	-	155	1	Intergenic	novelGene_3667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAGAAATAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	80608645	80608490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_80608500_80608600
PB_novel_19543_0	chr17	+	1419	1	Intergenic	novelGene_3668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80746803	80748222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_80746800_80748200
PB_novel_19545_0	chr17	+	936	1	Intergenic	novelGene_3669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80781734	80782670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_80781700_80782700
PB_novel_19552_0	chr17	-	178	1	Intergenic	novelGene_3670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTAAAAAAAAGCTGCAA	NA	False	NA	NA	False	NA	NA	NA	80859571	80859393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_80859400_80859600
PB_novel_19564_0	chr17	+	178	1	Intergenic	novelGene_3671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	307	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	82023649	82023827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_82023600_82023800
PB_novel_19565_0	chr17	+	174	1	Intergenic	novelGene_3672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	82064384	82064558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_82064400_82064600
PB_novel_19574_0	chr17	-	175	1	Intergenic	novelGene_3673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	82843446	82843271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_82843300_82843400
PB_novel_19576_0	chr17	-	157	1	Intergenic	novelGene_3674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	83323041	83322884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_83322900_83323000
PB_novel_19582_0	chr17	+	4534	1	Intergenic	novelGene_3675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATACTAAAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-19	NA	83773748	83778282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_83773700_83778300
PB_novel_19583_0	chr17	+	175	1	Intergenic	novelGene_3676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATTTAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	83788603	83788778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_83788600_83788800
PB_novel_19585_0	chr17	-	177	1	Intergenic	novelGene_3677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	401	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAACCTGT	NA	False	NA	NA	False	NA	NA	NA	83813235	83813058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_83813100_83813200
PB_novel_19591_0	chr17	-	176	1	Intergenic	novelGene_3678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAGAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	83886852	83886676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_83886700_83886900
PB_novel_19592_0	chr17	-	177	1	Intergenic	novelGene_3679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATATTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83901920	83901743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_83901700_83901900
PB_novel_19596_0	chr17	+	172	1	Intergenic	novelGene_3680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAAAATATTAATAA	NA	False	NA	NA	False	NA	NA	NA	83963497	83963669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_83963500_83963700
PB_novel_19600_0	chr17	-	165	1	Intergenic	novelGene_3681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAACACCACCACCA	NA	False	NA	NA	False	NA	NA	NA	83992804	83992639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_83992600_83992800
PB_novel_19604_0	chr17	+	176	1	Intergenic	novelGene_3682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAAAAAATGGCATAG	NA	False	NA	NA	False	NA	NA	NA	84071809	84071985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_84071800_84072000
PB_novel_19608_0	chr17	-	164	1	Intergenic	novelGene_3683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAGTTTAAAAAAAAA	9225	False	NA	NA	False	NA	NA	NA	84178721	84178557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_84178600_84178700
PB_novel_19612_0	chr17	+	151	1	Intergenic	novelGene_3684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAACAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	84438218	84438369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_84438200_84438400
PB_novel_19616_0	chr17	-	176	1	Intergenic	novelGene_3685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAATAGAATT	NA	False	NA	NA	False	NA	NA	NA	84517577	84517401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_84517400_84517600
PB_novel_19617_0	chr17	+	174	1	Intergenic	novelGene_3686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9529	False	NA	NA	False	NA	NA	NA	84521763	84521937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_84521800_84521900
PB_novel_19621_0	chr17	-	176	1	Intergenic	novelGene_3687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATTTAAAATAA	NA	False	NA	NA	False	NA	NA	NA	84624089	84623913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_84623900_84624100
PB_novel_19622_0	chr17	+	2379	1	Intergenic	novelGene_3688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	5653	False	NA	NA	False	NA	NA	NA	84632175	84634554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_84632200_84634600
PB_novel_19632_0	chr17	+	177	1	Intergenic	novelGene_3689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	732	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGATATGCAACC	NA	False	NA	NA	False	NA	NA	NA	85136482	85136659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_85136500_85136700
PB_novel_19634_0	chr17	+	180	1	Intergenic	novelGene_3690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	85218647	85218827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_85218600_85218800
PB_novel_19636_1	chr17	-	4524	2	Antisense	novelGene_ENSMUSG00000061130.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85274982	85270418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_85270726_85270765
PB_novel_19636_2	chr17	-	3526	1	Antisense	novelGene_ENSMUSG00000061130.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85274982	85271456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_85271500_85275000
PB_novel_19644_0	chr17	-	176	1	Intergenic	novelGene_3691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85412059	85411883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_85411900_85412100
PB_novel_19645_0	chr17	-	175	1	Intergenic	novelGene_3692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAGAAAAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	85414974	85414799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_85414800_85415000
PB_novel_19652_0	chr17	-	160	1	Intergenic	novelGene_3693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAAAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	85469130	85468970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_85469000_85469100
PB_novel_19658_0	chr17	+	179	1	Intergenic	novelGene_3694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAATGGGGAACAGAG	NA	False	NA	NA	False	NA	NA	NA	85943436	85943615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_85943400_85943600
PB_novel_19659_0	chr17	-	168	1	Intergenic	novelGene_3695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	86088760	86088592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_86088600_86088800
PB_novel_19662_0	chr17	-	175	1	Intergenic	novelGene_3696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	86245893	86245718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_86245700_86245900
PB_novel_19665_0	chr17	+	177	1	Intergenic	novelGene_3697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAATTATGTGAGAT	728	False	NA	NA	False	NA	NA	NA	86439751	86439928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_86439800_86439900
PB_novel_19678_0	chr17	+	174	1	Intergenic	novelGene_3698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATAAATTAATTA	NA	False	NA	NA	False	NA	NA	NA	87392182	87392356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_87392200_87392400
PB_novel_19680_0	chr17	+	178	1	Intergenic	novelGene_3699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGATTGCCAT	NA	False	NA	NA	False	NA	NA	NA	87550091	87550269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_87550100_87550300
PB_novel_19688_0	chr17	-	180	1	NIC	ENSMUSG00000036438.15	novel	1205	6	NA	NA	-5	-11056	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-45	NA	87754289	87754109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr17_-_87754100_87754300
PB_novel_19689_0	chr17	-	169	1	Intergenic	novelGene_3700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTGCAAACAAGTA	NA	False	NA	NA	False	NA	NA	NA	87775905	87775736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_87775700_87775900
PB_novel_19695_0	chr17	-	171	1	Intergenic	novelGene_3701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAATAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87890915	87890744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_87890700_87890900
PB_novel_19702_0	chr17	+	167	1	Intergenic	novelGene_3702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87961026	87961193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_87961000_87961200
PB_novel_19703_0	chr17	+	172	1	Intergenic	novelGene_3703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	87961398	87961570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_87961400_87961600
PB_novel_19705_0	chr17	-	1611	1	Antisense	novelGene_ENSMUSG00000024151.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAATGACTCAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	87990204	87988593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_87988600_87990200
PB_novel_19707_2	chr17	+	178	2	Antisense	novelGene_ENSMUSG00000050138.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAAGGAGGCC	NA	False	NA	NA	False	NA	NA	NA	88039136	88096662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_88039261_88096608
PB_novel_19707_3	chr17	+	180	2	Antisense	novelGene_ENSMUSG00000050138.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAAGGAGGCC	NA	False	NA	NA	False	NA	NA	NA	88039135	88096662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_88039215_88096561
PB_novel_19711_0	chr17	+	176	1	Intergenic	novelGene_3704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTAAAAAAAAAGAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	88096483	88096659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_88096500_88096700
PB_novel_19715_0	chr17	-	924	1	FSM	ENSMUSG00000117522.2	ENSMUST00000234265.2	217	1	15	-722	15	722	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATTAAAAAAGAAAAAAA	NA	False	NA	NA	False	AAGAAA	-5	NA	88276633	88275709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr17_-_88275700_88276600
PB_novel_19717_1	chr17	-	5799	1	Antisense	novelGene_ENSMUSG00000005370.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAACAACAACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88290435	88284636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_88284600_88290400
PB_novel_19720_0	chr17	+	147	1	Intergenic	novelGene_3705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	88361273	88361420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_88361300_88361400
PB_novel_19726_0	chr17	-	169	1	Intergenic	novelGene_3706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAACTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88392376	88392207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_88392200_88392400
PB_novel_19727_0	chr17	+	175	1	Intergenic	novelGene_3707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAAAGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	88398084	88398259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_88398100_88398300
PB_novel_19728_0	chr17	+	176	1	Intergenic	novelGene_3708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88398918	88399094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_88398900_88399100
PB_novel_19730_0	chr17	-	171	1	Intergenic	novelGene_3709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAGGAAGGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	88409191	88409020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_88409000_88409200
PB_novel_19733_0	chr17	-	149	1	Intergenic	novelGene_3710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATAAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	88428924	88428775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_88428800_88428900
PB_novel_19743_0	chr17	-	165	1	Intergenic	novelGene_3711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAATAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	88741614	88741449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_88741400_88741600
PB_novel_19747_0	chr17	-	1386	1	Antisense	novelGene_ENSMUSG00000034998.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAAAAAAAAGAAAAGC	NA	False	NA	NA	False	NA	NA	NA	88795922	88794536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_88794500_88795900
PB_novel_19750_0	chr17	-	172	1	Intergenic	novelGene_3712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATATATAATATAAAA	NA	False	NA	NA	False	NA	NA	NA	88817295	88817123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_88817100_88817300
PB_novel_19760_0	chr17	+	192	1	Intergenic	novelGene_3713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAGCCAGGGA	NA	False	NA	NA	False	NA	NA	NA	92619508	92619700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_92619500_92619700
PB_novel_19764_0	chr17	+	177	1	Intergenic	novelGene_3714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	93530670	93530847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_93530700_93530800
PB_novel_19766_0	chr17	-	181	1	Intergenic	novelGene_3715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94393189	94393008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_94393000_94393200
PB_novel_19769_14	chr17	+	5118	2	Intergenic	novelGene_3716	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94990131	94995293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_94992660_94992703
PB_novel_19769_18	chr17	+	2500	1	Intergenic	novelGene_3719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94992793	94995293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_94992800_94995300
PB_novel_19769_31	chr17	+	3929	2	Intergenic	novelGene_3718	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	668	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94991315	94995293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_94992676_94992724
PB_novel_19769_38	chr17	+	3938	2	Intergenic	novelGene_3717	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94991314	94995293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_94992678_94992718
PB_novel_19779_0	chr17	+	200	1	Intergenic	novelGene_3720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAATATATATATAG	NA	False	NA	NA	False	NA	NA	NA	95162347	95162547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_+_95162300_95162500
PB_novel_19785_0	chr18	+	3025	1	Intergenic	novelGene_8390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GATTTACAAGGTAAAAAAAA	5425	False	NA	NA	False	NA	NA	NA	3011232	3014257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_3011200_3014300
PB_novel_19789_0	chr18	-	175	1	Intergenic	novelGene_8391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATATGCTTAAGG	NA	False	NA	NA	False	NA	NA	NA	3104784	3104609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_3104600_3104800
PB_novel_19793_0	chr18	+	175	1	Intergenic	novelGene_8392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGATTATTTAAAAA	9365	False	NA	NA	False	NA	NA	NA	3347577	3347752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_3347600_3347800
PB_novel_19796_0	chr18	-	181	1	Intergenic	novelGene_8393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	3384823	3384642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_3384600_3384800
PB_novel_19807_4	chr18	-	4051	1	FSM	ENSMUSG00000073647.5	ENSMUST00000097690.5	619	1	-312	-3120	-312	3120	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACATAAATAAAAAAAAAA	-1	True	NA	NA	False	AATATA	-34	NA	4199250	4195199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_4195200_4199200
PB_novel_19818_0	chr18	+	4900	1	Genic_Genomic	ENSMUSG00000024236.19	novel	NA	NA	NA	NA	-80	-76531	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAACAAAAAAAAAA	89	False	NA	NA	False	NA	NA	NA	4921645	4926545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_+_4921600_4926500
PB_novel_19821_0	chr18	-	180	1	Intergenic	novelGene_8394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAATAAATAAGGAACAGA	NA	False	NA	NA	False	NA	NA	NA	5345363	5345183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_5345200_5345400
PB_novel_19822_0	chr18	+	156	1	Intergenic	novelGene_8395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	5398615	5398771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_5398600_5398800
PB_novel_19824_0	chr18	+	180	1	Intergenic	novelGene_8396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5951487	5951667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_5951500_5951700
PB_novel_19829_0	chr18	+	5544	1	Intergenic	novelGene_8397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6118537	6124081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_6118500_6124100
PB_novel_19831_0	chr18	+	175	1	Intergenic	novelGene_8398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	6221562	6221737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_6221600_6221700
PB_novel_19832_0	chr18	+	176	1	Intergenic	novelGene_8399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATCTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6243191	6243367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_6243200_6243400
PB_novel_19836_0	chr18	+	157	1	Intergenic	novelGene_8400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAACAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	6286641	6286798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_6286600_6286800
PB_novel_19851_0	chr18	-	168	1	Intergenic	novelGene_8401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6746219	6746051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_6746100_6746200
PB_novel_19858_0	chr18	+	156	1	Intergenic	novelGene_8402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAATAAATAAATTA	1879	False	NA	NA	False	NA	NA	NA	7182979	7183135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_7183000_7183100
PB_novel_19859_0	chr18	+	169	1	Intergenic	novelGene_8403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTTAAAAAATGTATT	NA	False	NA	NA	False	NA	NA	NA	7264096	7264265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_7264100_7264300
PB_novel_19864_0	chr18	+	2755	1	Antisense	novelGene_ENSMUSG00000057440.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-24	NA	7456558	7459313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_+_7456600_7459300
PB_novel_19873_0	chr18	-	176	1	Intergenic	novelGene_8404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATCTATT	2875	False	NA	NA	False	NA	NA	NA	7866217	7866041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_7866000_7866200
PB_novel_19879_0	chr18	+	88	1	Intergenic	novelGene_8405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-16	NA	8051994	8052082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_8052000_8052100
PB_novel_19881_0	chr18	-	166	1	Intergenic	novelGene_8406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8673138	8672972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_8673000_8673100
PB_novel_19882_0	chr18	+	2594	1	FSM	ENSMUSG00000092097.3	ENSMUST00000171469.3	439	1	422	-2577	422	2577	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-12	NA	8694520	8697114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_8694500_8697100
PB_novel_19884_0	chr18	+	177	1	Intergenic	novelGene_8407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	273	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	9473375	9473552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_9473400_9473600
PB_novel_19890_5	chr18	+	5971	2	Antisense	novelGene_ENSMUSG00000047879.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10010792	10016885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_+_10015445_10015566
PB_novel_19890_6	chr18	+	5971	2	Antisense	novelGene_ENSMUSG00000047879.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10010792	10016885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_+_10015468_10015589
PB_novel_19895_0	chr18	+	176	1	Intergenic	novelGene_8408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGAAGAAGAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	10037753	10037929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_10037800_10037900
PB_novel_19896_0	chr18	+	3092	2	Antisense	novelGene_ENSMUSG00000047879.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCATGAAGTTATTTTA	NA	False	NA	NA	False	NA	NA	NA	10039513	10047317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_+_10039644_10044355
PB_novel_19898_0	chr18	+	160	1	Intergenic	novelGene_8409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAATAAAACTTTTTC	NA	False	NA	NA	False	NA	NA	NA	10090386	10090546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_10090400_10090500
PB_novel_19899_0	chr18	-	190	1	Intergenic	novelGene_8410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATGATGAAATGAC	NA	False	NA	NA	False	NA	NA	NA	10190631	10190441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_10190400_10190600
PB_novel_19910_1	chr18	+	177	1	Intergenic	novelGene_8411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAACCAAAC	NA	False	NA	NA	False	NA	NA	NA	10574475	10574652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_10574500_10574700
PB_novel_19912_0	chr18	+	190	1	Intergenic	novelGene_8412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATAAATCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	10599927	10600117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_10599900_10600100
PB_novel_19921_0	chr18	-	175	1	Intergenic	novelGene_8413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11744888	11744713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_11744700_11744900
PB_novel_19926_0	chr18	+	177	1	Intergenic	novelGene_8414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAACAAATAG	NA	False	NA	NA	False	NA	NA	NA	11912306	11912483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_11912300_11912500
PB_novel_19929_0	chr18	-	177	1	Intergenic	novelGene_8415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	12063054	12062877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_12062900_12063100
PB_novel_19933_0	chr18	-	171	1	Intergenic	novelGene_8416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	296	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	12133815	12133644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_12133600_12133800
PB_novel_19937_0	chr18	-	174	1	Intergenic	novelGene_8417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	8867	False	NA	NA	False	NA	NA	NA	12296814	12296640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_12296600_12296800
PB_novel_19939_0	chr18	-	185	1	Antisense	novelGene_ENSMUSG00000024410.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATCTTTTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	12319163	12318978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_12319000_12319200
PB_novel_19950_0	chr18	-	178	1	Intergenic	novelGene_8418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	14082938	14082760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_14082800_14082900
PB_novel_19952_0	chr18	+	1225	1	Intergenic	novelGene_8419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAACCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	14754872	14756097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_14754900_14756100
PB_novel_19953_0	chr18	-	176	1	Intergenic	novelGene_8420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAGAGAGAGACT	NA	False	NA	NA	False	NA	NA	NA	14835864	14835688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_14835700_14835900
PB_novel_19955_0	chr18	+	170	1	Intergenic	novelGene_8421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGATATATATATTTAA	NA	False	NA	NA	False	NA	NA	NA	14909233	14909403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_14909200_14909400
PB_novel_19966_0	chr18	-	183	1	Intergenic	novelGene_8422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAATCAAAGA	NA	False	NA	NA	False	NA	NA	NA	16122722	16122539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_16122500_16122700
PB_novel_19967_0	chr18	+	178	1	Intergenic	novelGene_8423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAGCAG	NA	False	NA	NA	False	NA	NA	NA	16603159	16603337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_16603200_16603300
PB_novel_19969_0	chr18	+	176	1	Intergenic	novelGene_8424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAACAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	17170563	17170739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_17170600_17170700
PB_novel_19971_0	chr18	+	156	1	Intergenic	novelGene_8425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	18081413	18081569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_18081400_18081600
PB_novel_19977_0	chr18	+	175	1	Intergenic	novelGene_8426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACATACCA	NA	False	NA	12	True	NA	NA	NA	20144096	20144271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_20144100_20144300
PB_novel_19978_0	chr18	+	5564	1	NIC	ENSMUSG00000044393.16	novel	5766	15	NA	NA	-27	-19225	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAGAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	20691184	20696748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_20691200_20696700
PB_novel_19986_0	chr18	+	3210	1	Intergenic	novelGene_8427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATTAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-16	NA	20873132	20876342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_20873100_20876300
PB_novel_19990_0	chr18	+	2172	1	Intergenic	novelGene_8428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATACCAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	20910159	20912331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_20910200_20912300
PB_novel_20003_0	chr18	+	2387	1	Genic_Genomic	ENSMUSG00000033107.7	novel	NA	NA	NA	NA	-9	-36722	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	5332	False	NA	NA	False	NA	NA	NA	21077672	21080059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_+_21077700_21080100
PB_novel_20011_0	chr18	+	175	1	Intergenic	novelGene_8430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAGTAGAAATA	NA	False	NA	NA	False	NA	NA	NA	21173134	21173309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_21173100_21173300
PB_novel_20014_0	chr18	-	168	1	Intergenic	novelGene_8431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATATCTGGAAAACC	NA	False	NA	NA	False	NA	NA	NA	21211164	21210996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_21211000_21211200
PB_novel_20020_0	chr18	-	172	1	Intergenic	novelGene_8432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAATTTAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	21523152	21522980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_21523000_21523200
PB_novel_20023_0	chr18	+	172	1	Intergenic	novelGene_8433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAAGAATATGAC	NA	False	NA	NA	False	NA	NA	NA	22169391	22169563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_22169400_22169600
PB_novel_20024_0	chr18	-	177	1	Intergenic	novelGene_8434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACATA	NA	False	NA	NA	False	NA	NA	NA	22724284	22724107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_22724100_22724300
PB_novel_20033_0	chr18	+	177	1	Intergenic	novelGene_8435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	24103596	24103773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_24103600_24103800
PB_novel_20039_0	chr18	+	176	1	Intergenic	novelGene_8436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAACAAACTAAA	NA	False	NA	NA	False	NA	NA	NA	24183515	24183691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_24183500_24183700
PB_novel_20045_0	chr18	-	197	1	Intergenic	novelGene_8437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAATAGCA	NA	False	NA	NA	False	NA	NA	NA	24365142	24364945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_24364900_24365100
PB_novel_20046_2	chr18	+	174	2	Intergenic	novelGene_8438	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGAATTATAGGA	NA	False	NA	NA	False	NA	NA	NA	24367690	24454047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_24367837_24454019
PB_novel_20047_0	chr18	+	206	1	Intergenic	novelGene_8439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATAAATTTTATTAGT	NA	False	NA	NA	False	NA	NA	NA	24458399	24458605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_24458400_24458600
PB_novel_20048_0	chr18	-	135	1	Intergenic	novelGene_8440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24508572	24508437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_24508400_24508600
PB_novel_20051_0	chr18	+	173	1	Intergenic	novelGene_8441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAAACAAAACCT	NA	False	NA	NA	False	NA	NA	NA	24626764	24626937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_24626800_24626900
PB_novel_20067_0	chr18	+	172	1	Intergenic	novelGene_8442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAACCCAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	24858957	24859129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_24859000_24859100
PB_novel_20068_0	chr18	+	176	1	Intergenic	novelGene_8443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATATCCGATAAG	6612	False	NA	NA	False	NA	NA	NA	24948073	24948249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_24948100_24948200
PB_novel_20069_0	chr18	-	173	1	Intergenic	novelGene_8444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	25099386	25099213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_25099200_25099400
PB_novel_20074_0	chr18	+	1694	2	NNC	ENSMUSG00000046636.6	novel	801	2	NA	NA	-28	705	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTGAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-13	NA	27731668	27733514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr18_+_27732448_27732599
PB_novel_20074_3	chr18	+	1849	1	Genic_Genomic	ENSMUSG00000046636.6	novel	NA	NA	NA	NA	-35	701	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTCTCTTGAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-9	NA	27731661	27733510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_+_27731700_27733500
PB_novel_20075_0	chr18	-	175	1	Intergenic	novelGene_8445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATAAAACATGGA	NA	False	NA	NA	False	NA	NA	NA	27809213	27809038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_27809000_27809200
PB_novel_20078_0	chr18	+	176	1	Intergenic	novelGene_8446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAACTAAA	NA	False	NA	NA	False	NA	NA	NA	30169804	30169980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_30169800_30170000
PB_novel_20083_0	chr18	-	180	1	Intergenic	novelGene_8447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	30428545	30428365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_30428400_30428500
PB_novel_20086_0	chr18	-	174	1	Intergenic	novelGene_8448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	30723943	30723769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_30723800_30723900
PB_novel_20088_0	chr18	+	178	1	Intergenic	novelGene_8449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATAACTGGAG	NA	False	NA	NA	False	NA	NA	NA	30829390	30829568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_30829400_30829600
PB_novel_20091_0	chr18	+	176	1	Intergenic	novelGene_8450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATCACAAAC	NA	False	NA	NA	False	NA	NA	NA	31509892	31510068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_31509900_31510100
PB_novel_20092_0	chr18	+	179	1	Intergenic	novelGene_8451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	31659330	31659509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_31659300_31659500
PB_novel_20096_0	chr18	+	174	1	Intergenic	novelGene_8452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	31832263	31832437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_31832300_31832400
PB_novel_20099_0	chr18	-	319	1	Intergenic	novelGene_8453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAAAATTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	31885508	31885189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_31885200_31885500
PB_novel_20103_0	chr18	+	2200	1	NIC	ENSMUSG00000024400.17	novel	1756	2	NA	NA	7	-22548	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAGAAAAAAAAAA	5662	False	NA	NA	False	NA	NA	NA	31937157	31939357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_31937200_31939400
PB_novel_20111_0	chr18	-	177	1	Intergenic	novelGene_8454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATAAAAACATGCT	NA	False	NA	NA	False	NA	NA	NA	32003480	32003303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_32003300_32003500
PB_novel_20112_0	chr18	-	1202	1	Intergenic	novelGene_8455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32007817	32006615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_32006600_32007800
PB_novel_20114_0	chr18	-	360	1	Intergenic	novelGene_8456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACATAAAAATAAAATTTT	7698	False	NA	NA	False	NA	NA	NA	32029282	32028922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_32028900_32029300
PB_novel_20116_0	chr18	+	151	1	Intergenic	novelGene_8457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATATAGTAAATAAACATAT	NA	False	NA	NA	False	NA	NA	NA	32051999	32052150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_32052000_32052200
PB_novel_20120_0	chr18	+	3910	1	NIC	ENSMUSG00000024384.5	novel	9613	14	NA	NA	160	1379	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTCTCGAAAAACCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32201014	32204924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_+_32201000_32204900
PB_novel_20129_0	chr18	-	174	1	Intergenic	novelGene_8458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAAAATCA	2033	False	NA	NA	False	NA	NA	NA	32460475	32460301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_32460300_32460500
PB_novel_20137_0	chr18	-	174	1	Intergenic	novelGene_8459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAATTTAAATTAC	NA	False	NA	NA	False	NA	NA	NA	33916465	33916291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_33916300_33916500
PB_novel_20151_0	chr18	-	1185	1	Intergenic	novelGene_8460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTGAGT	NA	False	NA	NA	False	NA	NA	NA	34141905	34140720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_34140700_34141900
PB_novel_20152_0	chr18	-	170	1	Intergenic	novelGene_8461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATTTAAAAAAAAAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	34159320	34159150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_34159200_34159300
PB_novel_20155_0	chr18	+	177	1	Intergenic	novelGene_8462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	34205229	34205406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_34205200_34205400
PB_novel_20156_0	chr18	-	177	1	Intergenic	novelGene_8463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACACAAACAGAA	NA	False	NA	NA	False	NA	NA	NA	34277735	34277558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_34277600_34277700
PB_novel_20157_0	chr18	-	1399	1	Intergenic	novelGene_8464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34376315	34374916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_34374900_34376300
PB_novel_20159_0	chr18	-	173	1	Intergenic	novelGene_8465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34417328	34417155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_34417200_34417300
PB_novel_20160_0	chr18	+	167	1	Intergenic	novelGene_8466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAATCTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34438141	34438308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_34438100_34438300
PB_novel_20161_0	chr18	+	163	1	Intergenic	novelGene_8467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATATAATAAATAAATAAT	NA	False	NA	NA	False	NA	NA	NA	34459112	34459275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_34459100_34459300
PB_novel_20163_0	chr18	+	177	1	Intergenic	novelGene_8468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	34488955	34489132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_34489000_34489100
PB_novel_20165_0	chr18	+	178	1	Intergenic	novelGene_8469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGGAGAGAAAGAA	1924	False	NA	NA	False	NA	NA	NA	34544251	34544429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_34544300_34544400
PB_novel_20170_0	chr18	-	176	1	Intergenic	novelGene_8470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	34612362	34612186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_34612200_34612400
PB_novel_20171_0	chr18	+	3409	1	Antisense	novelGene_ENSMUSG00000036501.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAACAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34621160	34624569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_+_34621200_34624600
PB_novel_20178_0	chr18	+	175	1	Antisense	novelGene_ENSMUSG00000003778.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34732637	34732812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_+_34732600_34732800
PB_novel_20179_0	chr18	+	168	1	Intergenic	novelGene_8471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTAC	NA	False	NA	NA	False	NA	NA	NA	34738007	34738175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_34738000_34738200
PB_novel_20186_0	chr18	-	174	1	Intergenic	novelGene_8472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34807241	34807067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_34807100_34807200
PB_novel_20188_0	chr18	+	164	1	Intergenic	novelGene_8473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAATAAACAAA	75	False	NA	NA	False	NA	NA	NA	34855656	34855820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_34855700_34855800
PB_novel_20189_0	chr18	-	175	1	Intergenic	novelGene_8474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAAAATGGCATTC	1274	False	NA	NA	False	NA	NA	NA	34861516	34861341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_34861300_34861500
PB_novel_20192_1	chr18	-	176	1	Intergenic	novelGene_8477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35014462	35014286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35014300_35014500
PB_novel_20197_0	chr18	+	181	1	Intergenic	novelGene_8475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAATGAAT	NA	False	NA	NA	False	NA	NA	NA	34931494	34931675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_34931500_34931700
PB_novel_20199_0	chr18	-	172	1	Intergenic	novelGene_8476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	34957153	34956981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_34957000_34957200
PB_novel_20203_0	chr18	-	175	1	Intergenic	novelGene_8478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAGAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	35031654	35031479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35031500_35031700
PB_novel_20204_0	chr18	-	181	1	Intergenic	novelGene_8479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAGCTATTGAAAA	NA	False	NA	NA	False	NA	NA	NA	35040391	35040210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35040200_35040400
PB_novel_20207_0	chr18	-	6389	1	NIC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	345	-22489	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35064715	35058326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_35058300_35064700
PB_novel_20209_0	chr18	-	379	1	Intergenic	novelGene_8480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATAGACTAGC	NA	False	NA	NA	False	NA	NA	NA	35068101	35067722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35067700_35068100
PB_novel_20212_0	chr18	+	4969	1	Intergenic	novelGene_8481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35087736	35092705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_35087700_35092700
PB_novel_20213_0	chr18	+	158	1	Intergenic	novelGene_8482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35096503	35096661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_35096500_35096700
PB_novel_20214_0	chr18	+	177	1	Intergenic	novelGene_8483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	35106739	35106916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_35106700_35106900
PB_novel_20215_0	chr18	-	173	1	Intergenic	novelGene_8484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAAGGAAA	8086	False	NA	NA	False	NA	NA	NA	35110722	35110549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35110500_35110700
PB_novel_20217_0	chr18	-	207	1	Intergenic	novelGene_8485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35183041	35182834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35182800_35183000
PB_novel_20218_0	chr18	+	160	1	Intergenic	novelGene_8486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATCTTAAAACAG	NA	False	NA	NA	False	NA	NA	NA	35186444	35186604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_35186400_35186600
PB_novel_20219_0	chr18	-	172	1	Intergenic	novelGene_8487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAACAA	7991	False	NA	NA	False	NA	NA	NA	35207064	35206892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35206900_35207100
PB_novel_20221_0	chr18	-	174	1	Intergenic	novelGene_8488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	771	False	NA	NA	False	NA	NA	NA	35214284	35214110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35214100_35214300
PB_novel_20223_0	chr18	-	2170	1	Intergenic	novelGene_8489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTTAAAAAAAAAAAAAAA	3522	False	NA	NA	False	GGGGCT	-22	NA	35255461	35253291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35253300_35255500
PB_novel_20224_0	chr18	-	1850	1	Intergenic	novelGene_8490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-26	NA	35265549	35263699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35263700_35265500
PB_novel_20235_0	chr18	+	160	1	Intergenic	novelGene_8491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAACAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35490149	35490309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_35490100_35490300
PB_novel_20236_0	chr18	+	1712	1	Intergenic	novelGene_8492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAACCAAAAAA	4738	False	NA	NA	False	NA	NA	NA	35499994	35501706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_35500000_35501700
PB_novel_20241_0	chr18	+	171	1	Intergenic	novelGene_8493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	35626359	35626530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_35626400_35626500
PB_novel_20244_0	chr18	-	168	1	Intergenic	novelGene_8494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	35681359	35681191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35681200_35681400
PB_novel_20248_1	chr18	-	165	1	Intergenic	novelGene_8495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	35728809	35728644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35728600_35728800
PB_novel_20249_0	chr18	-	173	1	Intergenic	novelGene_8503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1311	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35897490	35897317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35897300_35897500
PB_novel_20251_0	chr18	-	201	1	Intergenic	novelGene_8496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAGATAGC	NA	False	NA	NA	False	NA	NA	NA	35766809	35766608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35766600_35766800
PB_novel_20252_0	chr18	-	175	1	Intergenic	novelGene_8497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGGCCACA	NA	False	NA	NA	False	NA	NA	NA	35772906	35772731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35772700_35772900
PB_novel_20255_0	chr18	-	182	1	Intergenic	novelGene_8498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	35777271	35777089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35777100_35777300
PB_novel_20256_0	chr18	+	178	1	Intergenic	novelGene_8499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	3834	False	NA	NA	False	NA	NA	NA	35777637	35777815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_35777600_35777800
PB_novel_20257_0	chr18	-	176	1	Intergenic	novelGene_8500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	35779686	35779510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35779500_35779700
PB_novel_20262_0	chr18	+	177	1	Intergenic	novelGene_8501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAACAAAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	35827497	35827674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_35827500_35827700
PB_novel_20267_0	chr18	+	149	1	Intergenic	novelGene_8502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATCTAAA	638	False	NA	NA	False	NA	NA	NA	35890324	35890473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_35890300_35890500
PB_novel_20273_0	chr18	-	1868	1	Intergenic	novelGene_8504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35915713	35913845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35913800_35915700
PB_novel_20276_0	chr18	-	176	1	Intergenic	novelGene_8505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGACTAGAT	NA	False	NA	NA	False	NA	NA	NA	35943587	35943411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_35943400_35943600
PB_novel_20279_0	chr18	-	2398	1	Genic_Genomic	ENSMUSG00000100320.2	novel	NA	NA	NA	NA	-2281	-588	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACGGGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35966427	35964029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_-_35964000_35966400
PB_novel_20286_0	chr18	+	164	1	Intergenic	novelGene_8506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAATTTTTCAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	36038335	36038499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_36038300_36038500
PB_novel_20287_1	chr18	+	177	1	Intergenic	novelGene_8507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36068648	36068825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_36068600_36068800
PB_novel_20291_0	chr18	-	176	1	Intergenic	novelGene_8508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGATAAAAAAATCTAA	NA	False	NA	NA	False	NA	NA	NA	36082914	36082738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_36082700_36082900
PB_novel_20307_0	chr18	+	2435	1	Intergenic	novelGene_8509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36427539	36429974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_36427500_36430000
PB_novel_20309_0	chr18	-	161	1	Intergenic	novelGene_8510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAATAAATAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	36471791	36471630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_36471600_36471800
PB_novel_20310_0	chr18	-	176	1	Intergenic	novelGene_8511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACCCACAAGA	NA	False	NA	NA	False	NA	NA	NA	36493001	36492825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_36492800_36493000
PB_novel_20317_0	chr18	+	175	1	Intergenic	novelGene_8512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGAACACAGT	2403	False	NA	NA	False	NA	NA	NA	36600188	36600363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_36600200_36600400
PB_novel_20330_0	chr18	-	150	1	Intergenic	novelGene_8513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAATAATAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36786642	36786492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_36786500_36786600
PB_novel_20333_0	chr18	-	129	1	Intergenic	novelGene_8514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	36827456	36827327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_36827300_36827500
PB_novel_20334_0	chr18	-	175	1	Intergenic	novelGene_8515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAGAAAAAAAATATAAA	NA	False	NA	NA	False	NA	NA	NA	36828285	36828110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_36828100_36828300
PB_novel_20336_0	chr18	+	209	1	Intergenic	novelGene_8516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	36845502	36845711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_36845500_36845700
PB_novel_20338_0	chr18	-	172	1	Intergenic	novelGene_8517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36850603	36850431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_36850400_36850600
PB_novel_20344_1	chr18	-	176	1	Intergenic	novelGene_8518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGTTGAA	NA	False	NA	NA	False	NA	NA	NA	36918367	36918191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_36918200_36918400
PB_novel_20346_0	chr18	+	169	1	Intergenic	novelGene_8519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAGA	379	False	NA	NA	False	NA	NA	NA	36968013	36968182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_36968000_36968200
PB_novel_20350_0	chr18	-	559	1	Antisense	novelGene_ENSMUSG00000104225.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37752977	37752418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_37752400_37753000
PB_novel_20361_0	chr18	+	149	1	Intergenic	novelGene_8520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGTTAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	37970234	37970383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_37970200_37970400
PB_novel_20362_0	chr18	-	178	1	Intergenic	novelGene_8521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAACTACAATTA	6563	False	NA	NA	False	NA	NA	NA	37992965	37992787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_37992800_37993000
PB_novel_20363_0	chr18	+	180	1	Intergenic	novelGene_8522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAGTATTCA	NA	False	NA	NA	False	NA	NA	NA	38008240	38008420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_38008200_38008400
PB_novel_20370_0	chr18	-	155	1	Intergenic	novelGene_8523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAATAAATATTTAAA	5002	False	NA	NA	False	NA	NA	NA	38198844	38198689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_38198700_38198800
PB_novel_20376_4	chr18	-	171	1	Intergenic	novelGene_8524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4776	False	NA	NA	False	NA	NA	NA	38370776	38370605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_38370600_38370800
PB_novel_20378_0	chr18	-	181	1	Intergenic	novelGene_8525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	38427437	38427256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_38427300_38427400
PB_novel_20387_0	chr18	+	176	1	Intergenic	novelGene_8526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAGAGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	38516685	38516861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_38516700_38516900
PB_novel_20391_0	chr18	+	177	1	Intergenic	novelGene_8527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	38670822	38670999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_38670800_38671000
PB_novel_20395_0	chr18	+	139	1	Intergenic	novelGene_8528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAGAACAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	38775068	38775207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_38775100_38775200
PB_novel_20413_0	chr18	-	176	1	Intergenic	novelGene_8529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	40638863	40638687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_40638700_40638900
PB_novel_20420_0	chr18	-	175	1	Intergenic	novelGene_8530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	42333406	42333231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_42333200_42333400
PB_novel_20429_0	chr18	+	173	1	Intergenic	novelGene_8531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAAGGTAGAAGA	7922	False	NA	NA	False	NA	NA	NA	42406306	42406479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_42406300_42406500
PB_novel_20433_0	chr18	+	171	1	Intergenic	novelGene_8532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAGAAAAAAG	1586	False	NA	NA	False	NA	NA	NA	42442566	42442737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_42442600_42442700
PB_novel_20435_0	chr18	-	204	1	Intergenic	novelGene_8533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	42478975	42478771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_42478800_42479000
PB_novel_20436_0	chr18	+	178	1	Intergenic	novelGene_8534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAGTTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	42496244	42496422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_42496200_42496400
PB_novel_20442_0	chr18	-	180	1	Intergenic	novelGene_8535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	42653728	42653548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_42653500_42653700
PB_novel_20444_0	chr18	-	173	1	Intergenic	novelGene_8536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	42754479	42754306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_42754300_42754500
PB_novel_20446_0	chr18	-	218	1	Intergenic	novelGene_8537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	42980878	42980660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_42980700_42980900
PB_novel_20447_0	chr18	-	175	1	Intergenic	novelGene_8538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	43241427	43241252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_43241300_43241400
PB_novel_20449_0	chr18	-	5135	1	FSM	ENSMUSG00000043424.11	ENSMUST00000057110.11	2379	1	-1	-2755	-1	2755	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGTAGGAAA	NA	False	NA	NA	False	AATAAA	-21	NA	43610862	43605727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_-_43605700_43610900
PB_novel_20452_0	chr18	-	167	1	Intergenic	novelGene_8539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATTAAAAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	44446900	44446733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_44446700_44446900
PB_novel_20454_0	chr18	-	188	1	Intergenic	novelGene_8540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	713	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTTTTAAAAAACGAAACC	NA	False	NA	NA	False	NA	NA	NA	44511875	44511687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_44511700_44511900
PB_novel_20455_0	chr18	-	390	1	Intergenic	novelGene_8541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	AAGAAA	-23	NA	44514816	44514426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_44514400_44514800
PB_novel_20457_0	chr18	+	2260	1	Antisense	novelGene_ENSMUSG00000071856.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	3524	False	NA	NA	False	AAGAAA	-36	NA	44560328	44562588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_+_44560300_44562600
PB_novel_20472_1	chr18	-	167	1	Intergenic	novelGene_8542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATATATACATACATAAAT	NA	False	NA	NA	False	NA	NA	NA	46625380	46625213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_46625200_46625400
PB_novel_20473_0	chr18	+	2400	1	Intergenic	novelGene_8543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46652795	46655195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_46652800_46655200
PB_novel_20474_0	chr18	-	4402	1	NIC	ENSMUSG00000033319.6	novel	5726	3	NA	NA	27	-19797	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46659011	46654609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_46654600_46659000
PB_novel_20475_0	chr18	-	172	1	Intergenic	novelGene_8544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATATTAAAAAAAAAAAGA	6165	False	NA	NA	False	NA	NA	NA	46667305	46667133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_46667100_46667300
PB_novel_20476_1	chr18	-	177	1	Intergenic	novelGene_8548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	7854	False	NA	NA	False	NA	NA	NA	46733710	46733533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_46733500_46733700
PB_novel_20477_0	chr18	+	156	1	Intergenic	novelGene_8545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46680413	46680569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_46680400_46680600
PB_novel_20479_0	chr18	+	187	1	Intergenic	novelGene_8546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATTAATTAATTAATTAAA	NA	False	NA	NA	False	NA	NA	NA	46696405	46696592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_46696400_46696600
PB_novel_20480_0	chr18	+	149	2	Intergenic	novelGene_8547	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATACATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46696711	46882160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_46696833_46882132
PB_novel_20485_0	chr18	+	131	1	Intergenic	novelGene_8549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9821	False	NA	NA	False	NA	NA	NA	46859867	46859998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_46859900_46860000
PB_novel_20494_0	chr18	+	175	1	Intergenic	novelGene_8550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAACAAAAA	5989	False	NA	NA	False	NA	NA	NA	47062051	47062226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_47062100_47062200
PB_novel_20499_0	chr18	-	177	1	Intergenic	novelGene_8551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAAAAGAATCAC	NA	False	NA	NA	False	NA	NA	NA	47086606	47086429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_47086400_47086600
PB_novel_20517_0	chr18	-	173	1	Intergenic	novelGene_8552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49641576	49641403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_49641400_49641600
PB_novel_20525_0	chr18	-	184	1	Intergenic	novelGene_8553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAGATTTTCAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	50060674	50060490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_50060500_50060700
PB_novel_20530_0	chr18	-	499	1	Intergenic	novelGene_8554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50286109	50285610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_50285600_50286100
PB_novel_20533_0	chr18	+	177	1	Intergenic	novelGene_8555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTGGCTCA	NA	False	NA	NA	False	NA	NA	NA	51467556	51467733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_51467600_51467700
PB_novel_20537_0	chr18	-	158	1	Intergenic	novelGene_8556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATCTTTAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	53559779	53559621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_53559600_53559800
PB_novel_20538_0	chr18	+	157	1	Intergenic	novelGene_8557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	53586156	53586313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_53586200_53586300
PB_novel_20539_0	chr18	-	168	1	Intergenic	novelGene_8558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATAATAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	53593098	53592930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_53592900_53593100
PB_novel_20542_0	chr18	-	2942	1	NIC	ENSMUSG00000048799.9	novel	3261	20	NA	NA	2	2307	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53877633	53874691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_53874700_53877600
PB_novel_20546_0	chr18	+	181	1	Intergenic	novelGene_8559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAGATAAAAGTGG	NA	False	NA	NA	False	NA	NA	NA	53956898	53957079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_53956900_53957100
PB_novel_20549_0	chr18	+	5304	1	Genic_Genomic	ENSMUSG00000073563.4	novel	NA	NA	NA	NA	-22	-81268	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53995171	54000475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_+_53995200_54000500
PB_novel_20553_0	chr18	+	177	1	Intergenic	novelGene_8560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATGG	NA	False	NA	NA	False	NA	NA	NA	54941825	54942002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_54941800_54942000
PB_novel_20554_0	chr18	+	169	1	Intergenic	novelGene_8561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAAGAAATTGAAT	NA	False	NA	NA	False	NA	NA	NA	55271943	55272112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_55271900_55272100
PB_novel_20555_0	chr18	+	176	1	Intergenic	novelGene_8562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATTTAATTTG	NA	False	NA	NA	False	NA	NA	NA	55888768	55888944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_55888800_55888900
PB_novel_20556_0	chr18	-	148	1	Intergenic	novelGene_8563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATGCCAGCATGA	NA	False	NA	NA	False	NA	NA	NA	56193905	56193757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_56193800_56193900
PB_novel_20557_0	chr18	-	175	1	Intergenic	novelGene_8564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	9923	False	NA	NA	False	NA	NA	NA	56459078	56458903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_56458900_56459100
PB_novel_20560_0	chr18	+	164	1	Intergenic	novelGene_8565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	56649732	56649896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_56649700_56649900
PB_novel_20570_0	chr18	-	181	1	Intergenic	novelGene_8566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGCAC	NA	False	NA	NA	False	NA	NA	NA	56715573	56715392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_56715400_56715600
PB_novel_20576_0	chr18	+	178	1	Intergenic	novelGene_8567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56777317	56777495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_56777300_56777500
PB_novel_20577_0	chr18	-	176	1	Intergenic	novelGene_8568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTTAG	9466	False	NA	NA	False	NA	NA	NA	56779819	56779643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_56779600_56779800
PB_novel_20582_0	chr18	-	184	1	Intergenic	novelGene_8569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAAAACAAAAAAACGA	NA	False	NA	-92	True	NA	NA	NA	56795331	56795147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_56795100_56795300
PB_novel_20584_0	chr18	+	192	1	Intergenic	novelGene_8570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	531	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	56807519	56807711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_56807500_56807700
PB_novel_20588_0	chr18	-	178	1	Intergenic	novelGene_8571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATATAAAAAAAAAAAAAA	9662	False	NA	NA	False	NA	NA	NA	56843749	56843571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_56843600_56843700
PB_novel_20590_0	chr18	-	4411	1	Intergenic	novelGene_8572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAACAACAACAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	56872077	56867666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_56867700_56872100
PB_novel_20604_0	chr18	-	171	1	Intergenic	novelGene_8573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAACTACAGCA	NA	False	NA	NA	False	NA	NA	NA	60069489	60069318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_60069300_60069500
PB_novel_20606_0	chr18	+	205	1	Intergenic	novelGene_8574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATAAATG	NA	False	NA	NA	False	NA	NA	NA	60612447	60612652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_60612400_60612700
PB_novel_20607_0	chr18	+	175	1	Intergenic	novelGene_8575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAATCTGATGA	NA	False	NA	NA	False	NA	NA	NA	60618659	60618834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_60618700_60618800
PB_novel_20613_0	chr18	-	977	1	Antisense	novelGene_ENSMUSG00000024603.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-12	NA	60692242	60691265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_60691300_60692200
PB_novel_20620_0	chr18	-	4975	1	NIC	ENSMUSG00000024613.17	novel	4595	26	NA	NA	1862	-4161	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60960237	60955262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_60955300_60960200
PB_novel_20623_0	chr18	-	177	1	Intergenic	novelGene_8576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTAAAAAAGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	61115075	61114898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_61114900_61115100
PB_novel_20628_0	chr18	-	2986	1	NIC	ENSMUSG00000024622.9	novel	5103	21	NA	NA	-1	-6253	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	5845	False	NA	NA	False	NA	NA	NA	61310101	61307115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr18_-_61307100_61310100
PB_novel_20633_0	chr18	-	160	1	Intergenic	novelGene_8577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAAACAAAACA	5531	False	NA	NA	False	NA	NA	NA	61646925	61646765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_61646800_61646900
PB_novel_20635_0	chr18	-	177	1	Intergenic	novelGene_8578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATTACT	NA	False	NA	NA	False	NA	NA	NA	61670746	61670569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_61670600_61670700
PB_novel_20640_0	chr18	+	164	1	Intergenic	novelGene_8579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	61763031	61763195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_61763000_61763200
PB_novel_20645_0	chr18	-	192	1	Intergenic	novelGene_8580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	61803973	61803781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_61803800_61804000
PB_novel_20646_0	chr18	+	177	1	Intergenic	novelGene_8581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATTCAC	NA	False	NA	NA	False	NA	NA	NA	61804069	61804246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_61804100_61804200
PB_novel_20647_0	chr18	+	911	1	Intergenic	novelGene_8582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61857615	61858526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_61857600_61858500
PB_novel_20653_0	chr18	+	3683	1	Antisense	novelGene_ENSMUSG00000042211.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62673389	62677072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_+_62673400_62677100
PB_novel_20659_0	chr18	-	172	1	Intergenic	novelGene_8583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAAAAGATTC	NA	False	NA	NA	False	NA	NA	NA	63259852	63259680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_63259700_63259900
PB_novel_20662_0	chr18	+	177	1	Intergenic	novelGene_8584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAATAGCACTT	NA	False	NA	NA	False	NA	NA	NA	63902828	63903005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_63902800_63903000
PB_novel_20671_0	chr18	+	177	1	Intergenic	novelGene_8585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	447	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAATCAA	NA	False	NA	NA	False	NA	NA	NA	64461413	64461590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_64461400_64461600
PB_novel_20672_0	chr18	+	175	1	Intergenic	novelGene_8586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAGTAGCG	NA	False	NA	NA	False	NA	NA	NA	64490669	64490844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_64490700_64490800
PB_novel_20673_0	chr18	-	178	1	Intergenic	novelGene_8587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	64491700	64491522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_64491500_64491700
PB_novel_20674_0	chr18	-	175	1	Intergenic	novelGene_8588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	64493880	64493705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_64493700_64493900
PB_novel_20677_0	chr18	-	174	1	Intergenic	novelGene_8589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAATCATATTACT	NA	False	NA	NA	False	NA	NA	NA	64547442	64547268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_64547300_64547400
PB_novel_20681_0	chr18	-	132	1	Intergenic	novelGene_8590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTAAAAACAAAACATATT	817	False	NA	NA	False	NA	NA	NA	64660255	64660123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_64660100_64660300
PB_novel_20683_0	chr18	-	158	1	Intergenic	novelGene_8591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	64776005	64775847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_64775800_64776000
PB_novel_20686_0	chr18	-	176	1	Intergenic	novelGene_8592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAGAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	65024919	65024743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_65024700_65024900
PB_novel_20690_0	chr18	+	162	1	Intergenic	novelGene_8593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAATAAATAAAATTAA	2106	False	NA	NA	False	NA	NA	NA	65053126	65053288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_65053100_65053300
PB_novel_20691_0	chr18	+	199	1	Intergenic	novelGene_8594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	65071238	65071437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_65071200_65071400
PB_novel_20693_0	chr18	+	169	1	Intergenic	novelGene_8595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65100454	65100623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_65100500_65100600
PB_novel_20699_0	chr18	-	185	1	Intergenic	novelGene_8596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGTAAATAAGTA	NA	False	NA	NA	False	NA	NA	NA	65522976	65522791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_65522800_65523000
PB_novel_20700_2	chr18	-	176	1	Intergenic	novelGene_8600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	65732470	65732294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_65732300_65732500
PB_novel_20702_0	chr18	+	175	1	Intergenic	novelGene_8597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAGAAAAAAAAGAAATAC	2011	False	NA	NA	False	NA	NA	NA	65590130	65590305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_65590100_65590300
PB_novel_20706_0	chr18	-	176	1	Intergenic	novelGene_8598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	65621450	65621274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_65621300_65621400
PB_novel_20712_0	chr18	+	163	1	Intergenic	novelGene_8599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAAAAAGAAAGC	NA	False	NA	NA	False	NA	NA	NA	65671028	65671191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_65671000_65671200
PB_novel_20716_0	chr18	-	3080	2	Antisense	novelGene_ENSMUSG00000042439.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-32	NA	65719384	65716261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_65718751_65718793
PB_novel_20716_2	chr18	-	3123	1	Antisense	novelGene_ENSMUSG00000042439.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-32	NA	65719384	65716261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_65716300_65719400
PB_novel_20719_0	chr18	-	3113	1	Intergenic	novelGene_8601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTTAC	NA	False	NA	NA	False	NA	NA	NA	65742268	65739155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_65739200_65742300
PB_novel_20720_0	chr18	-	4652	1	Intergenic	novelGene_8602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	2516	False	NA	NA	False	NA	NA	NA	65764573	65759921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_65759900_65764600
PB_novel_20721_1	chr18	-	4895	2	Antisense	novelGene_ENSMUSG00000117775.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	1	7	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65772990	65767892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_65770674_65770876
PB_novel_20722_1	chr18	-	176	1	Intergenic	novelGene_8603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	65770872	65770696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_65770700_65770900
PB_novel_20723_0	chr18	-	174	1	Intergenic	novelGene_8604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAAAATCAGACCC	2782	False	NA	NA	False	NA	NA	NA	65795704	65795530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_65795500_65795700
PB_novel_20736_0	chr18	-	172	1	Intergenic	novelGene_8605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAGAAGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	66629864	66629692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_66629700_66629900
PB_novel_20737_0	chr18	+	176	1	Intergenic	novelGene_8606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATAACGTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	66632623	66632799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_66632600_66632800
PB_novel_20742_0	chr18	+	175	1	Antisense	novelGene_ENSMUSG00000118131.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAATTGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67284170	67284345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_+_67284200_67284300
PB_novel_20760_0	chr18	-	166	1	Intergenic	novelGene_8607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAAGATTTGC	7388	False	NA	NA	False	NA	NA	NA	67603498	67603332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_67603300_67603500
PB_novel_20762_0	chr18	+	2294	1	Antisense	novelGene_ENSMUSG00000024533.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67633376	67635670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_+_67633400_67635700
PB_novel_20764_0	chr18	+	168	1	Intergenic	novelGene_8608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAATAAAAAAAATAA	1622	False	NA	NA	False	NA	NA	NA	67643258	67643426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_67643300_67643400
PB_novel_20767_0	chr18	+	171	1	Intergenic	novelGene_8609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	67689301	67689472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_67689300_67689500
PB_novel_20769_0	chr18	+	170	1	Intergenic	novelGene_8610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	67713211	67713381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_67713200_67713400
PB_novel_20771_0	chr18	-	188	1	Intergenic	novelGene_8611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67736151	67735963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_67736000_67736200
PB_novel_20772_0	chr18	+	176	1	Intergenic	novelGene_8612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	254	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTCAC	NA	False	NA	NA	False	NA	NA	NA	67738711	67738887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_67738700_67738900
PB_novel_20773_0	chr18	+	177	1	Intergenic	novelGene_8614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	67758242	67758419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_67758200_67758400
PB_novel_20776_0	chr18	-	179	1	Intergenic	novelGene_8613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGGCTAAA	NA	False	NA	NA	False	NA	NA	NA	67755815	67755636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_67755600_67755800
PB_novel_20792_0	chr18	-	1270	1	Genic_Genomic	ENSMUSG00000118134.2	novel	NA	NA	NA	NA	22929	288	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67910084	67908814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr18_-_67908800_67910100
PB_novel_20794_0	chr18	-	176	1	Intergenic	novelGene_8615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67958339	67958163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_67958200_67958300
PB_novel_20805_0	chr18	+	171	1	Intergenic	novelGene_8616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAATAAGG	NA	False	NA	NA	False	NA	NA	NA	68436649	68436820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_68436600_68436800
PB_novel_20807_0	chr18	-	2567	1	Intergenic	novelGene_8617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69501012	69498445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_69498400_69501000
PB_novel_20807_2	chr18	-	2539	2	Antisense	novelGene_ENSMUSG00000053477.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69501012	69498445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_69500620_69500647
PB_novel_20808_0	chr18	-	1747	1	Intergenic	novelGene_8618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	69642604	69640857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_69640900_69642600
PB_novel_20812_0	chr18	+	140	1	Intergenic	novelGene_8619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAATTTCAAGATT	NA	False	NA	NA	False	NA	NA	NA	69962795	69962935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_69962800_69962900
PB_novel_20822_0	chr18	-	170	1	Intergenic	novelGene_8620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTAAAAATGAGATTTA	NA	False	NA	NA	False	NA	NA	NA	71058961	71058791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_71058800_71059000
PB_novel_20826_0	chr18	+	194	1	Intergenic	novelGene_8621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATGTCAAAATA	NA	False	NA	NA	False	NA	NA	NA	73682243	73682437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_73682200_73682400
PB_novel_20840_0	chr18	-	177	1	Intergenic	novelGene_8622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAATAGACCCATTG	NA	False	NA	NA	False	NA	NA	NA	74098113	74097936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_74097900_74098100
PB_novel_20843_0	chr18	-	177	1	Intergenic	novelGene_8623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAGTAGCAACAAAA	8930	False	NA	NA	False	NA	NA	NA	74207012	74206835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_74206800_74207000
PB_novel_20845_0	chr18	+	169	1	Intergenic	novelGene_8624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	74299541	74299710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_74299500_74299700
PB_novel_20850_0	chr18	-	176	1	Intergenic	novelGene_8625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAGTGTACAAAG	NA	False	NA	NA	False	NA	NA	NA	74878390	74878214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_74878200_74878400
PB_novel_20855_0	chr18	-	184	1	Intergenic	novelGene_8626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	74947058	74946874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_74946900_74947100
PB_novel_20859_0	chr18	+	163	1	Intergenic	novelGene_8627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATAAATAAATCTTTT	4371	False	NA	NA	False	NA	NA	NA	75110565	75110728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_75110600_75110700
PB_novel_20861_0	chr18	+	174	1	Intergenic	novelGene_8628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAGACAAAG	NA	False	NA	NA	False	NA	NA	NA	75130953	75131127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_75131000_75131100
PB_novel_20866_0	chr18	-	279	1	Intergenic	novelGene_8629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACATAAAATAAATAAATCT	NA	False	NA	NA	False	NA	NA	NA	75147545	75147266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_75147300_75147500
PB_novel_20874_0	chr18	-	3953	1	Intergenic	novelGene_8630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAACCCTAC	NA	False	NA	NA	False	CATAAA	-25	NA	75303683	75299730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_75299700_75303700
PB_novel_20886_0	chr18	-	134	2	Intergenic	novelGene_8631	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	75444314	75443296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_75443381_75444264
PB_novel_20890_0	chr18	-	1887	1	Intergenic	novelGene_8632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	75476396	75474509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_75474500_75476400
PB_novel_20896_0	chr18	-	2691	3	Antisense	novelGene_ENSMUSG00000025880.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	75528480	75501584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_75502636_75503962_75504017_75526894
PB_novel_20896_1	chr18	-	2765	4	Antisense	novelGene_ENSMUSG00000025880.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	75528480	75501584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_75502636_75503962_75504017_75508941_75509012_75526890
PB_novel_20896_4	chr18	-	2766	4	Antisense	novelGene_ENSMUSG00000025880.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	75528480	75501584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_75502636_75503962_75504017_75508941_75509013_75526890
PB_novel_20897_0	chr18	-	1775	1	Antisense	novelGene_ENSMUSG00000025880.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	75503359	75501584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_75501600_75503400
PB_novel_20901_0	chr18	+	166	1	Intergenic	novelGene_8633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAGAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	75618239	75618405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_75618200_75618400
PB_novel_20903_0	chr18	+	3081	1	Intergenic	novelGene_8634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75644491	75647572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_75644500_75647600
PB_novel_20905_0	chr18	-	178	1	Intergenic	novelGene_8635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6866	False	NA	NA	False	NA	NA	NA	76008787	76008609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_76008600_76008800
PB_novel_20910_0	chr18	+	159	1	Intergenic	novelGene_8636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	76367296	76367455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_76367300_76367500
PB_novel_20920_0	chr18	-	173	1	Intergenic	novelGene_8637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	76972628	76972455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_76972500_76972600
PB_novel_20929_2	chr18	+	4374	1	Intergenic	novelGene_8638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	6434	False	NA	NA	False	NA	NA	NA	77126252	77130626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_77126300_77130600
PB_novel_20930_0	chr18	-	180	1	Intergenic	novelGene_8639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGGGAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	77129183	77129003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77129000_77129200
PB_novel_20932_0	chr18	+	4080	2	Intergenic	novelGene_8640	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATCGAAAAAAAAAAAAAAAG	322	False	NA	NA	False	NA	NA	NA	77137649	77141799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_77140123_77140192
PB_novel_20935_0	chr18	-	173	1	Intergenic	novelGene_8641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77168039	77167866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77167900_77168000
PB_novel_20942_0	chr18	-	3598	1	Antisense	novelGene_ENSMUSG00000025423.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAGAAACCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77217404	77213806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_77213800_77217400
PB_novel_20943_0	chr18	-	1617	2	Antisense	novelGene_ENSMUSG00000025423.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAACCAAACATAAA	NA	False	NA	NA	False	NA	NA	NA	77217404	77213823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_77214686_77216649
PB_novel_20945_0	chr18	+	3121	2	Intergenic	novelGene_8642	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77223648	77226870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_77225061_77225161
PB_novel_20946_0	chr18	+	700	1	Intergenic	novelGene_8643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77226170	77226870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_77226200_77226900
PB_novel_20948_0	chr18	-	666	1	Intergenic	novelGene_8644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	77232679	77232013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77232000_77232700
PB_novel_20960_4	chr18	+	178	1	Intergenic	novelGene_8650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	5846	False	NA	NA	False	NA	NA	NA	77787695	77787873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_77787700_77787900
PB_novel_20964_0	chr18	-	177	1	Intergenic	novelGene_8647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACCAACCAAACAAA	2146	False	NA	NA	False	NA	NA	NA	77765632	77765455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77765500_77765600
PB_novel_20966_0	chr18	-	174	1	Intergenic	novelGene_8645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAATAAAAAA	6787	False	NA	NA	False	NA	NA	NA	77725944	77725770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77725800_77725900
PB_novel_20967_0	chr18	-	145	1	Intergenic	novelGene_8646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77736441	77736296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77736300_77736400
PB_novel_20971_0	chr18	+	2015	1	Intergenic	novelGene_8648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77773144	77775159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_77773100_77775200
PB_novel_20972_0	chr18	-	151	1	Intergenic	novelGene_8649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATATAATAAAAATAAGTAA	NA	False	NA	NA	False	NA	NA	NA	77778667	77778516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77778500_77778700
PB_novel_20974_0	chr18	-	176	1	Intergenic	novelGene_8651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77798211	77798035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77798000_77798200
PB_novel_20976_0	chr18	+	145	1	Intergenic	novelGene_8652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAGAGAG	5417	False	NA	NA	False	NA	NA	NA	77805609	77805754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_77805600_77805800
PB_novel_20977_0	chr18	+	168	1	Intergenic	novelGene_8653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAAAAGAAC	6077	False	NA	NA	False	NA	NA	NA	77806269	77806437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_77806300_77806400
PB_novel_20979_1	chr18	-	181	1	Intergenic	novelGene_8654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	77811475	77811294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77811300_77811500
PB_novel_20981_0	chr18	-	175	1	Intergenic	novelGene_8655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	77815604	77815429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77815400_77815600
PB_novel_20986_0	chr18	-	175	1	Intergenic	novelGene_8656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77845170	77844995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77845000_77845200
PB_novel_20989_2	chr18	-	171	1	Intergenic	novelGene_8657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	455	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	77875399	77875228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77875200_77875400
PB_novel_20996_0	chr18	-	167	1	Intergenic	novelGene_8658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	77893218	77893051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_77893100_77893200
PB_novel_21000_0	chr18	+	175	1	Intergenic	novelGene_8659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAGAGGATATTA	NA	False	NA	NA	False	NA	NA	NA	77928847	77929022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_77928800_77929000
PB_novel_21011_1	chr18	+	1423	1	FSM	ENSMUSG00000117949.2	ENSMUST00000236190.2	253	1	-914	-256	-914	256	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAATAAAAAGGAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	80062479	80063902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_80062500_80063900
PB_novel_21017_0	chr18	+	1800	1	Intergenic	novelGene_8660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	80165985	80167785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_80166000_80167800
PB_novel_21021_0	chr18	+	174	1	Intergenic	novelGene_8661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATATGT	4654	False	NA	NA	False	NA	NA	NA	80211848	80212022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_80211800_80212000
PB_novel_21022_0	chr18	+	172	1	Intergenic	novelGene_8662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80228547	80228719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_80228500_80228700
PB_novel_21026_0	chr18	-	1807	1	Antisense	novelGene_ENSMUSG00000024571.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCACAAAAAAACCCCCAA	4855	False	NA	NA	False	NA	NA	NA	80252587	80250780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr18_-_80250800_80252600
PB_novel_21046_0	chr18	+	159	1	Intergenic	novelGene_8663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAATCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82729792	82729951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_82729800_82730000
PB_novel_21048_0	chr18	-	179	1	Intergenic	novelGene_8664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAATCTTTTAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	82749186	82749007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_82749000_82749200
PB_novel_21056_0	chr18	-	172	1	Intergenic	novelGene_8665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	82893659	82893487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_82893500_82893700
PB_novel_21060_0	chr18	+	172	1	Intergenic	novelGene_8666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	82954420	82954592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_82954400_82954600
PB_novel_21062_0	chr18	-	176	1	Intergenic	novelGene_8667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAATCTCAG	NA	False	NA	NA	False	NA	NA	NA	82989484	82989308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_82989300_82989500
PB_novel_21074_0	chr18	+	180	1	Intergenic	novelGene_8668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAGAAAAAAAAAG	468	False	NA	NA	False	NA	NA	NA	84713005	84713185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_84713000_84713200
PB_novel_21076_0	chr18	+	177	1	Intergenic	novelGene_8669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	84810607	84810784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_84810600_84810800
PB_novel_21080_0	chr18	+	180	1	Intergenic	novelGene_8670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	84925749	84925929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_84925700_84925900
PB_novel_21082_0	chr18	-	2469	1	Intergenic	novelGene_8671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAGGAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84956808	84954339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_84954300_84956800
PB_novel_21087_0	chr18	-	2221	1	Intergenic	novelGene_8672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84993798	84991577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_84991600_84993800
PB_novel_21089_0	chr18	-	176	1	Intergenic	novelGene_8673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATCCAGCTTTAC	NA	False	NA	NA	False	NA	NA	NA	85730181	85730005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_85730000_85730200
PB_novel_21090_0	chr18	-	175	1	Intergenic	novelGene_8674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAACTGATATCTATA	NA	False	NA	NA	False	NA	NA	NA	86003888	86003713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_86003700_86003900
PB_novel_21096_0	chr18	-	193	1	Intergenic	novelGene_8675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	88849850	88849657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_-_88849700_88849800
PB_novel_21100_0	chr18	+	176	1	Intergenic	novelGene_8676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAGAATCAGAAA	NA	False	NA	NA	False	NA	NA	NA	89969303	89969479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_89969300_89969500
PB_novel_21122_0	chr19	+	177	1	Intergenic	novelGene_1	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3567036	3567213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_3567000_3567200
PB_novel_21128_0	chr19	+	168	1	Intergenic	novelGene_2	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTTAAAAAGAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	3612568	3612736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_3612600_3612700
PB_novel_21129_0	chr19	+	177	1	Intergenic	novelGene_3	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	3616061	3616238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_3616100_3616200
PB_novel_21131_0	chr19	-	172	1	Intergenic	novelGene_4	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	3638783	3638611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_3638600_3638800
PB_novel_21137_2	chr19	+	180	1	Intergenic	novelGene_5	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	3728632	3728812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_3728600_3728800
PB_novel_21138_1	chr19	+	180	1	Intergenic	novelGene_13	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	3882529	3882709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_3882500_3882700
PB_novel_21141_0	chr19	+	177	1	Intergenic	novelGene_6	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAAAACCAAAATGA	NA	False	NA	NA	False	NA	NA	NA	3756099	3756276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_3756100_3756300
PB_novel_21144_0	chr19	-	177	1	Intergenic	novelGene_9	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3812067	3811890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_3811900_3812100
PB_novel_21144_4	chr19	-	181	1	Intergenic	novelGene_7	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGATGTCTACA	NA	False	NA	NA	False	NA	NA	NA	3787299	3787118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_3787100_3787300
PB_novel_21145_0	chr19	+	175	1	Intergenic	novelGene_8	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	7981	False	NA	NA	False	NA	NA	NA	3795351	3795526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_3795400_3795500
PB_novel_21147_0	chr19	-	177	1	Intergenic	novelGene_10	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACTGACA	NA	False	NA	NA	False	NA	NA	NA	3821401	3821224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_3821200_3821400
PB_novel_21151_0	chr19	-	171	1	Intergenic	novelGene_11	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATTATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3823070	3822899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_3822900_3823100
PB_novel_21156_0	chr19	+	176	1	Intergenic	novelGene_12	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAGAATC	NA	False	NA	NA	False	NA	NA	NA	3879019	3879195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_3879000_3879200
PB_novel_21168_0	chr19	-	173	1	Intergenic	novelGene_14	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4093537	4093364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_4093400_4093500
PB_novel_21169_1	chr19	-	117	2	Intergenic	novelGene_15	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4142408	4093364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_4093458_4142384
PB_novel_21171_0	chr19	+	178	1	Intergenic	novelGene_16	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAACAGATGTATTT	1796	False	NA	NA	False	NA	NA	NA	4142101	4142279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_4142100_4142300
PB_novel_21172_0	chr19	+	175	1	Intergenic	novelGene_17	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACAGGGAGAT	5267	False	NA	NA	False	NA	NA	NA	4145572	4145747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_4145600_4145700
PB_novel_21176_0	chr19	+	177	1	Antisense	novelGene_ENSMUSG00000117905.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAATAAAATA	3141	False	NA	NA	False	NA	NA	NA	4218980	4219157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_+_4219000_4219200
PB_novel_21181_0	chr19	-	166	1	Intergenic	novelGene_18	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAGAAAAAAGAAA	8665	False	NA	NA	False	NA	NA	NA	4297627	4297461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_4297500_4297600
PB_novel_21182_0	chr19	+	158	1	Intergenic	novelGene_22	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4395903	4396061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_4395900_4396100
PB_novel_21184_0	chr19	+	172	1	Intergenic	novelGene_19	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAAAAAAAAATTA	6490	False	NA	NA	False	NA	NA	NA	4309022	4309194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_4309000_4309200
PB_novel_21188_0	chr19	-	181	1	Intergenic	novelGene_20	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4360395	4360214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_4360200_4360400
PB_novel_21189_1	chr19	-	177	1	Intergenic	novelGene_23	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATCTCAGCA	NA	False	NA	NA	False	NA	NA	NA	4408533	4408356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_4408400_4408500
PB_novel_21191_0	chr19	+	174	1	Intergenic	novelGene_21	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGATGAAAC	NA	False	NA	NA	False	NA	NA	NA	4386220	4386394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_4386200_4386400
PB_novel_21205_0	chr19	-	178	1	Intergenic	novelGene_24	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	4500421	4500243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_4500200_4500400
PB_novel_21206_0	chr19	-	224	1	Intergenic	novelGene_25	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	4528770	4528546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_4528500_4528800
PB_novel_21207_1	chr19	+	180	1	Intergenic	novelGene_26	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	4572734	4572914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_4572700_4572900
PB_novel_21211_0	chr19	-	159	1	Intergenic	novelGene_27	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAATAAATATTTTTT	NA	False	NA	NA	False	NA	NA	NA	4707301	4707142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_4707100_4707300
PB_novel_21225_0	chr19	+	81	1	Intergenic	novelGene_28	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATCGTC	NA	False	NA	NA	False	NA	NA	NA	4895280	4895361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_4895300_4895400
PB_novel_21226_4	chr19	+	176	1	Intergenic	novelGene_31	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	362	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4975023	4975199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_4975000_4975200
PB_novel_21227_0	chr19	-	152	1	Intergenic	novelGene_29	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	9118	False	NA	NA	False	NA	NA	NA	4919132	4918980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_4919000_4919100
PB_novel_21228_2	chr19	-	162	1	Intergenic	novelGene_30	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAATAAATAAAATC	4206	False	NA	NA	False	NA	NA	NA	4924044	4923882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_4923900_4924000
PB_novel_21232_0	chr19	-	168	1	Intergenic	novelGene_32	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAATA	6568	False	NA	NA	False	NA	NA	NA	5017384	5017216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5017200_5017400
PB_novel_21239_0	chr19	-	2236	1	Antisense	novelGene_ENSMUSG00000024891.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5074026	5071790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_-_5071800_5074000
PB_novel_21244_0	chr19	-	325	1	Intergenic	novelGene_33	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	6271	False	NA	NA	False	NA	NA	NA	5128092	5127767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5127800_5128100
PB_novel_21245_0	chr19	-	133	1	Intergenic	novelGene_34	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAAAATCACCCA	NA	False	NA	NA	False	NA	NA	NA	5186149	5186016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5186000_5186100
PB_novel_21246_0	chr19	+	178	1	Intergenic	novelGene_35	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5199571	5199749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_5199600_5199700
PB_novel_21251_0	chr19	+	158	1	Intergenic	novelGene_36	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAAGGT	9383	False	NA	NA	False	NA	NA	NA	5296285	5296443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_5296300_5296400
PB_novel_21257_0	chr19	-	174	1	Intergenic	novelGene_37	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAATAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	5436401	5436227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5436200_5436400
PB_novel_21258_0	chr19	-	179	1	Intergenic	novelGene_38	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACAATTGG	9630	False	NA	NA	False	NA	NA	NA	5447908	5447729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5447700_5447900
PB_novel_21259_0	chr19	+	174	1	Intergenic	novelGene_39	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1187	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAATATAATAAATAT	1095	False	NA	NA	False	NA	NA	NA	5451352	5451526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_5451400_5451500
PB_novel_21263_0	chr19	-	175	1	Intergenic	novelGene_40	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5493530	5493355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5493400_5493500
PB_novel_21264_0	chr19	+	159	1	Antisense	novelGene_ENSMUSG00000095098.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAATAAATAAATCTT	8887	False	NA	NA	False	NA	NA	NA	5503518	5503677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_+_5503500_5503700
PB_novel_21276_0	chr19	-	175	1	Intergenic	novelGene_41	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5672788	5672613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5672600_5672800
PB_novel_21277_0	chr19	+	187	1	Intergenic	novelGene_42	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	5680674	5680861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_5680700_5680900
PB_novel_21279_0	chr19	-	174	1	Intergenic	novelGene_43	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTTAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	5693858	5693684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5693700_5693900
PB_novel_21282_0	chr19	-	169	1	Intergenic	novelGene_44	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	5783435	5783266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5783300_5783400
PB_novel_21284_0	chr19	-	139	1	Intergenic	novelGene_45	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGACGTG	NA	False	NA	NA	False	NA	NA	NA	5783594	5783455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5783500_5783600
PB_novel_21285_0	chr19	-	176	1	Intergenic	novelGene_46	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTGTAGAAAG	9377	False	NA	NA	False	NA	NA	NA	5812913	5812737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5812700_5812900
PB_novel_21290_0	chr19	+	155	1	Intergenic	novelGene_47	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAATAAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5839739	5839894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_5839700_5839900
PB_novel_21296_1	chr19	+	3052	1	Antisense	novelGene_ENSMUSG00000092274.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAACCAAAAAAAAAAAAAA	3268	False	NA	NA	False	NA	NA	NA	5881901	5884953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_+_5881900_5885000
PB_novel_21299_1	chr19	+	172	1	Intergenic	novelGene_48	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5904104	5904276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_5904100_5904300
PB_novel_21303_0	chr19	+	159	1	Intergenic	novelGene_49	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAAGAGTGCTGGA	NA	False	NA	NA	False	NA	NA	NA	5945161	5945320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_5945200_5945300
PB_novel_21304_0	chr19	-	172	1	Intergenic	novelGene_50	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATCTTAAAAAAAAAAAAAA	6281	False	NA	NA	False	NA	NA	NA	5949326	5949154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5949200_5949300
PB_novel_21305_0	chr19	-	175	1	Intergenic	novelGene_51	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	4656	False	NA	NA	False	NA	NA	NA	5959515	5959340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_5959300_5959500
PB_novel_21312_0	chr19	+	177	1	Intergenic	novelGene_52	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAATCTT	NA	False	NA	NA	False	NA	NA	NA	6028742	6028919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_6028700_6028900
PB_novel_21320_0	chr19	-	162	1	Intergenic	novelGene_53	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGGGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	6087356	6087194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_6087200_6087400
PB_novel_21322_0	chr19	+	171	1	Intergenic	novelGene_54	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAATTTTTAAAAAG	6020	False	NA	NA	False	NA	NA	NA	6091119	6091290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_6091100_6091300
PB_novel_21325_1	chr19	+	177	1	Intergenic	novelGene_58	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	6198249	6198426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_6198200_6198400
PB_novel_21326_0	chr19	-	172	1	Intergenic	novelGene_55	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAACAAAAAAAAA	8258	False	NA	NA	False	NA	NA	NA	6110264	6110092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_6110100_6110300
PB_novel_21329_0	chr19	-	149	1	Intergenic	novelGene_56	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAAATTATTTTTTTT	1937	False	NA	NA	False	NA	NA	NA	6139476	6139327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_6139300_6139500
PB_novel_21330_0	chr19	+	2302	1	Genic_Genomic	ENSMUSG00000117666.2	novel	NA	NA	NA	NA	-222	-1736	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACCAAAACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6144226	6146528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_6144200_6146500
PB_novel_21335_0	chr19	-	126	1	Intergenic	novelGene_57	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAAAAAGAAGAG	NA	False	NA	NA	False	AATAAA	-6	NA	6193630	6193504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_6193500_6193600
PB_novel_21336_0	chr19	+	167	1	Intergenic	novelGene_59	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATCTTTAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	6210446	6210613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_6210400_6210600
PB_novel_21340_0	chr19	+	153	1	Intergenic	novelGene_60	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGGAAGGAAGGAAGGAA	NA	False	NA	6	True	AATAAA	-10	NA	6261404	6261557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_6261400_6261600
PB_novel_21344_0	chr19	-	176	1	Intergenic	novelGene_61	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGGTAG	NA	False	NA	NA	False	NA	NA	NA	6316238	6316062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_6316100_6316200
PB_novel_21346_0	chr19	+	177	1	Intergenic	novelGene_62	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	308	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAACAAGC	1417	False	NA	NA	False	NA	NA	NA	6377965	6378142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_6378000_6378100
PB_novel_21349_1	chr19	-	177	1	Intergenic	novelGene_63	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	311	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	6484736	6484559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_6484600_6484700
PB_novel_21356_0	chr19	+	178	1	Intergenic	novelGene_64	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGTGAAATGGGCA	NA	False	NA	NA	False	NA	NA	NA	6707897	6708075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_6707900_6708100
PB_novel_21359_0	chr19	+	173	1	Intergenic	novelGene_65	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAGTAAAGAAAATAA	NA	False	NA	NA	False	NA	NA	NA	6839710	6839883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_6839700_6839900
PB_novel_21361_0	chr19	-	178	1	Intergenic	novelGene_66	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	357	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGAAACACT	3012	False	NA	NA	False	NA	NA	NA	6867737	6867559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_6867600_6867700
PB_novel_21366_0	chr19	+	168	1	Intergenic	novelGene_67	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGCTG	NA	False	NA	NA	False	NA	NA	NA	6921712	6921880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_6921700_6921900
PB_novel_21367_0	chr19	-	162	1	Intergenic	novelGene_68	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAGTAAATAAATAAATA	9420	False	NA	NA	False	NA	NA	NA	6925132	6924970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_6925000_6925100
PB_novel_21370_0	chr19	+	177	1	Intergenic	novelGene_69	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	1595	False	NA	NA	False	NA	NA	NA	6978107	6978284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_6978100_6978300
PB_novel_21372_0	chr19	+	175	1	Intergenic	novelGene_70	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAACCCA	4877	False	NA	NA	False	NA	NA	NA	6985506	6985681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_6985500_6985700
PB_novel_21373_0	chr19	-	175	1	Intergenic	novelGene_71	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAACAAAA	9267	False	NA	NA	False	NA	NA	NA	6986793	6986618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_6986600_6986800
PB_novel_21376_0	chr19	-	178	1	Intergenic	novelGene_72	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	4939	False	NA	NA	False	NA	NA	NA	7009242	7009064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_7009100_7009200
PB_novel_21377_0	chr19	-	176	1	Intergenic	novelGene_73	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTGAAAAGAAAAGAAAAGA	9097	False	NA	NA	False	NA	NA	NA	7030893	7030717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_7030700_7030900
PB_novel_21384_0	chr19	+	177	1	Intergenic	novelGene_74	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	7188391	7188568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_7188400_7188600
PB_novel_21387_1	chr19	-	174	1	Intergenic	novelGene_75	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9254	False	NA	NA	False	NA	NA	NA	7197027	7196853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_7196900_7197000
PB_novel_21389_0	chr19	+	166	1	Intergenic	novelGene_76	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATCTAAAAAAAAAA	3270	False	NA	NA	False	NA	NA	NA	7225143	7225309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_7225100_7225300
PB_novel_21397_0	chr19	-	181	1	Intergenic	novelGene_80	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9393	False	NA	NA	False	NA	NA	NA	7473896	7473715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_7473700_7473900
PB_novel_21406_0	chr19	+	145	1	Intergenic	novelGene_77	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	7431373	7431518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_7431400_7431500
PB_novel_21407_0	chr19	+	4931	1	Antisense	novelGene_ENSMUSG00000024758.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	7442042	7446973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_+_7442000_7447000
PB_novel_21408_0	chr19	-	175	1	Intergenic	novelGene_78	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAGAAAATTAAG	NA	False	NA	NA	False	NA	NA	NA	7454248	7454073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_7454100_7454200
PB_novel_21409_0	chr19	+	173	1	Intergenic	novelGene_79	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAATGTT	NA	False	NA	NA	False	NA	NA	NA	7458366	7458539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_7458400_7458500
PB_novel_21410_0	chr19	+	1079	1	NIC	ENSMUSG00000024759.15	novel	437	3	NA	NA	16	-13950	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	7471778	7472857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_7471800_7472900
PB_novel_21417_0	chr19	+	176	1	Intergenic	novelGene_81	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAAAAAGAAAG	7038	False	NA	NA	False	NA	NA	NA	8674798	8674974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_8674800_8675000
PB_novel_21418_2	chr19	-	177	1	Intergenic	novelGene_82	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	8678607	8678430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_8678400_8678600
PB_novel_21423_0	chr19	+	158	1	Intergenic	novelGene_83	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	8693116	8693274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_8693100_8693300
PB_novel_21430_0	chr19	-	168	1	Intergenic	novelGene_84	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAATCTAAAAAAAAAAAAA	9263	False	NA	NA	False	NA	NA	NA	8714104	8713936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_8713900_8714100
PB_novel_21432_0	chr19	+	3256	1	NIC	ENSMUSG00000010097.16	novel	2326	21	NA	NA	-2	-3367	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	8613	False	NA	NA	False	NA	NA	NA	8734480	8737736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_8734500_8737700
PB_novel_21433_0	chr19	+	890	1	NIC	ENSMUSG00000117924.2	novel	748	2	NA	NA	11	-579	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6530	False	NA	NA	False	NA	NA	NA	8748370	8749260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_+_8748400_8749300
PB_novel_21437_0	chr19	+	167	1	Intergenic	novelGene_85	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	78	False	NA	NA	False	NA	NA	NA	8756811	8756978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_8756800_8757000
PB_novel_21439_0	chr19	+	248	1	Intergenic	novelGene_86	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTGTTTCAAAAAAACAAAA	1982	False	NA	NA	False	NA	NA	NA	8773045	8773293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_8773000_8773300
PB_novel_21440_0	chr19	+	175	1	Intergenic	novelGene_87	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAAAAACCCTT	2364	False	NA	NA	False	NA	NA	NA	8773427	8773602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_8773400_8773600
PB_novel_21445_0	chr19	-	194	1	Intergenic	novelGene_88	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATATATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8827317	8827123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_8827100_8827300
PB_novel_21447_0	chr19	-	177	1	Intergenic	novelGene_89	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	343	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8842808	8842631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_8842600_8842800
PB_novel_21455_0	chr19	-	158	1	Intergenic	novelGene_90	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATCATGGGTTC	NA	False	NA	NA	False	NA	NA	NA	8953442	8953284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_8953300_8953400
PB_novel_21462_1	chr19	+	2532	2	NNC	ENSMUSG00000100141.2	novel	1112	2	NA	NA	-290	1054	intron_retention	TRUE	canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9584177	9586794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_9584927_9585011
PB_novel_21462_3	chr19	+	2613	1	Genic_Genomic	ENSMUSG00000100141.2	novel	NA	NA	NA	NA	-287	1053	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9584180	9586793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_9584200_9586800
PB_novel_21463_0	chr19	+	179	1	Antisense	novelGene_ENSMUSG00000118138.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9843260	9843439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_+_9843300_9843400
PB_novel_21465_0	chr19	+	3700	1	Intergenic	novelGene_91	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3458	False	NA	NA	False	NA	NA	NA	9864785	9868485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_9864800_9868500
PB_novel_21470_0	chr19	+	183	1	Intergenic	novelGene_92	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACAACC	4408	False	NA	NA	False	NA	NA	NA	9989513	9989696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_9989500_9989700
PB_novel_21471_0	chr19	-	169	1	Intergenic	novelGene_93	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	3662	False	NA	NA	False	NA	NA	NA	9997966	9997797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_9997800_9998000
PB_novel_21475_0	chr19	-	173	1	Intergenic	novelGene_94	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10135853	10135680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_10135700_10135900
PB_novel_21479_2	chr19	-	4536	2	NNC	ENSMUSG00000024742.16	novel	2341	2	NA	NA	24	-26	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACAATAAAATT	2179	False	NA	NA	False	AAGAAA	-43	NA	10181283	10176531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_-_10179802_10180017
PB_novel_21482_0	chr19	+	216	1	Intergenic	novelGene_95	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	10231344	10231560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_10231300_10231600
PB_novel_21497_0	chr19	-	168	1	Intergenic	novelGene_96	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	8392	False	NA	NA	False	NA	NA	NA	10821662	10821494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_10821500_10821700
PB_novel_21501_0	chr19	+	154	1	Intergenic	novelGene_97	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAACAAAAAAAAA	4869	False	NA	NA	False	NA	NA	NA	10864761	10864915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_10864800_10864900
PB_novel_21504_0	chr19	+	171	1	Intergenic	novelGene_98	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAGAA	2450	False	NA	NA	False	NA	NA	NA	10954819	10954990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_10954800_10955000
PB_novel_21515_0	chr19	+	2931	1	Intergenic	novelGene_99	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11790043	11792974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_11790000_11793000
PB_novel_21516_0	chr19	+	2828	1	Antisense	novelGene_ENSMUSG00000041488.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11795639	11798467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_+_11795600_11798500
PB_novel_21517_0	chr19	+	167	1	Intergenic	novelGene_100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAATCTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	11866558	11866725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_11866600_11866700
PB_novel_21528_0	chr19	+	207	1	Intergenic	novelGene_101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCCCATTTTAAAAAAAAAAA	3582	False	NA	NA	False	NA	NA	NA	11962221	11962428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_11962200_11962400
PB_novel_21540_0	chr19	-	204	1	Intergenic	novelGene_102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAATGTCCT	NA	False	NA	NA	False	AATAAA	-5	NA	12689384	12689180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_12689200_12689400
PB_novel_21546_0	chr19	+	161	1	Intergenic	novelGene_103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	13130453	13130614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_13130500_13130600
PB_novel_21551_0	chr19	+	174	1	Intergenic	novelGene_104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	14510796	14510970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_14510800_14511000
PB_novel_21553_0	chr19	-	178	1	Intergenic	novelGene_105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAACAAAAAACGGGA	NA	False	NA	NA	False	NA	NA	NA	14667367	14667189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_14667200_14667400
PB_novel_21554_0	chr19	-	175	1	Intergenic	novelGene_106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATAGAGATATA	NA	False	NA	NA	False	NA	NA	NA	14667668	14667493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_14667500_14667700
PB_novel_21556_0	chr19	-	157	1	Intergenic	novelGene_107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	69	False	NA	NA	False	NA	NA	NA	14679805	14679648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_14679600_14679800
PB_novel_21564_0	chr19	+	2811	1	Antisense	novelGene_ENSMUSG00000024640.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCAAAAATAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15894731	15897542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_+_15894700_15897500
PB_novel_21578_0	chr19	-	172	1	Intergenic	novelGene_108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	16098509	16098337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_16098300_16098500
PB_novel_21589_1	chr19	+	176	1	Intergenic	novelGene_109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16684152	16684328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_16684200_16684300
PB_novel_21593_0	chr19	+	175	1	Intergenic	novelGene_110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	17387263	17387438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_17387300_17387400
PB_novel_21597_0	chr19	+	181	1	Intergenic	novelGene_111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18566417	18566598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_18566400_18566600
PB_novel_21605_0	chr19	-	174	1	Intergenic	novelGene_112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGATTTAAG	NA	False	NA	NA	False	NA	NA	NA	19115141	19114967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_19115000_19115100
PB_novel_21612_0	chr19	-	175	1	Intergenic	novelGene_113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	516	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	20900634	20900459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_20900500_20900600
PB_novel_21617_0	chr19	+	184	1	Intergenic	novelGene_114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	21417472	21417656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_21417500_21417700
PB_novel_21618_0	chr19	+	173	1	Intergenic	novelGene_115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAGAGGAAGACGAG	NA	False	NA	NA	False	NA	NA	NA	21505523	21505696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_21505500_21505700
PB_novel_21620_0	chr19	+	175	1	Intergenic	novelGene_116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAGAAAAGATATTTA	NA	False	NA	NA	False	NA	NA	NA	21572575	21572750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_21572600_21572800
PB_novel_21622_0	chr19	+	1985	1	Intergenic	novelGene_117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCCCTGCCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21636397	21638382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_21636400_21638400
PB_novel_21625_0	chr19	-	175	1	Intergenic	novelGene_118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAATGTG	NA	False	NA	NA	False	NA	NA	NA	21688009	21687834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_21687800_21688000
PB_novel_21626_0	chr19	-	173	1	Intergenic	novelGene_119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAAAGATTAAAA	NA	False	NA	NA	False	NA	NA	NA	21722186	21722013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_21722000_21722200
PB_novel_21630_0	chr19	-	165	1	Intergenic	novelGene_120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21801111	21800946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_21800900_21801100
PB_novel_21633_0	chr19	-	168	1	Intergenic	novelGene_121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21859203	21859035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_21859000_21859200
PB_novel_21634_0	chr19	+	180	1	Intergenic	novelGene_122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGTCTC	NA	False	NA	NA	False	NA	NA	NA	22231350	22231530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_22231400_22231500
PB_novel_21640_0	chr19	-	172	1	Intergenic	novelGene_123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAGAAAGGTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	22974426	22974254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_22974300_22974400
PB_novel_21644_0	chr19	+	279	1	Intergenic	novelGene_124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23019416	23019695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_23019400_23019700
PB_novel_21647_0	chr19	-	171	1	Intergenic	novelGene_125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	4408	False	NA	NA	False	NA	NA	NA	23053770	23053599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_23053600_23053800
PB_novel_21650_1	chr19	-	168	1	Intergenic	novelGene_126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	975	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAAAGAAT	9994	False	NA	NA	False	NA	NA	NA	23065922	23065754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_23065800_23065900
PB_novel_21667_0	chr19	-	161	1	Intergenic	novelGene_127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	23207902	23207741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_23207700_23207900
PB_novel_21668_0	chr19	-	185	1	Intergenic	novelGene_128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23211077	23210892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_23210900_23211100
PB_novel_21670_0	chr19	+	148	1	Intergenic	novelGene_129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATGTATAATAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	23240428	23240576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_23240400_23240600
PB_novel_21673_0	chr19	-	177	1	Intergenic	novelGene_130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	23770789	23770612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_23770600_23770800
PB_novel_21679_0	chr19	+	4111	1	Intergenic	novelGene_131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGCAAAAAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	24080109	24084220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_24080100_24084200
PB_novel_21682_0	chr19	+	6077	1	Antisense	novelGene_ENSMUSG00000024812.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24114707	24120784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_+_24114700_24120800
PB_novel_21685_0	chr19	-	175	1	Intergenic	novelGene_132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATCTGAAGAG	NA	False	NA	NA	False	NA	NA	NA	24163293	24163118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_24163100_24163300
PB_novel_21689_0	chr19	-	172	1	Intergenic	novelGene_133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	24230997	24230825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_24230800_24231000
PB_novel_21694_0	chr19	-	173	1	Intergenic	novelGene_134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATTAAAAAAAAAAAAGAA	3204	False	NA	NA	False	NA	NA	NA	24277379	24277206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_24277200_24277400
PB_novel_21695_0	chr19	-	172	1	Intergenic	novelGene_135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4623	False	NA	NA	False	NA	NA	NA	24286286	24286114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_24286100_24286300
PB_novel_21699_0	chr19	-	173	1	Intergenic	novelGene_136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAAAGAAGT	7294	False	NA	NA	False	NA	NA	NA	24511447	24511274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_24511300_24511400
PB_novel_21700_0	chr19	-	288	1	Intergenic	novelGene_137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAATAAATATTTTTA	1441	False	NA	NA	False	NA	NA	NA	24517300	24517012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_24517000_24517300
PB_novel_21704_0	chr19	-	175	1	Intergenic	novelGene_138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAATTGTATTAAAA	NA	False	NA	NA	False	NA	NA	NA	24921206	24921031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_24921000_24921200
PB_novel_21711_1	chr19	+	177	1	Intergenic	novelGene_139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACTTCTAA	5801	False	NA	NA	False	NA	NA	NA	25180885	25181062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_25180900_25181100
PB_novel_21715_0	chr19	-	175	1	Intergenic	novelGene_140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	25242934	25242759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_25242800_25242900
PB_novel_21718_0	chr19	-	1644	2	Antisense	novelGene_ENSMUSG00000032702.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25402965	25401267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_-_25402695_25402748
PB_novel_21718_2	chr19	-	1698	1	Antisense	novelGene_ENSMUSG00000032702.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25402965	25401267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_-_25401300_25403000
PB_novel_21718_3	chr19	-	1642	2	Antisense	novelGene_ENSMUSG00000032702.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25402965	25401267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_-_25402693_25402748
PB_novel_21721_0	chr19	+	156	1	Intergenic	novelGene_141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATACACA	NA	False	NA	NA	False	NA	NA	NA	25472705	25472861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_25472700_25472900
PB_novel_21740_0	chr19	+	2890	1	Intergenic	novelGene_142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	28460804	28463694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_28460800_28463700
PB_novel_21744_0	chr19	+	177	1	Intergenic	novelGene_143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	28676742	28676919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_28676700_28676900
PB_novel_21759_0	chr19	-	1902	1	Antisense	novelGene_ENSMUSG00000118038.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	29048215	29046313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_-_29046300_29048200
PB_novel_21760_0	chr19	-	1346	1	Intergenic	novelGene_144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29081808	29080462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_29080500_29081800
PB_novel_21765_0	chr19	-	171	1	Intergenic	novelGene_145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAATAAAACTGAT	NA	False	NA	NA	False	NA	NA	NA	29306239	29306068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_29306100_29306200
PB_novel_21768_0	chr19	-	172	1	Intergenic	novelGene_146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29503211	29503039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_29503000_29503200
PB_novel_21773_0	chr19	+	168	1	Intergenic	novelGene_147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	29624617	29624785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_29624600_29624800
PB_novel_21782_0	chr19	-	175	1	Intergenic	novelGene_148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAATAAATAAATAAGA	675	False	NA	NA	False	NA	NA	NA	29812311	29812136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_29812100_29812300
PB_novel_21784_0	chr19	+	175	1	Intergenic	novelGene_149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	268	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAAAATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	29922562	29922737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_29922600_29922700
PB_novel_21785_0	chr19	-	176	1	Intergenic	novelGene_150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAACTCCTG	NA	False	NA	NA	False	NA	NA	NA	29934197	29934021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_29934000_29934200
PB_novel_21791_0	chr19	+	169	1	Intergenic	novelGene_151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAAAAAAAAAGT	9196	False	NA	NA	False	NA	NA	NA	30051969	30052138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_30052000_30052100
PB_novel_21813_0	chr19	+	157	1	Intergenic	novelGene_152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAATAAATAAATCTAAAA	NA	False	NA	NA	False	NA	NA	NA	32094979	32095136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_32095000_32095100
PB_novel_21816_0	chr19	+	5921	1	Intergenic	novelGene_153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32122769	32128690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_32122800_32128700
PB_novel_21823_0	chr19	-	164	1	Intergenic	novelGene_154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAATAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	32197447	32197283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_32197300_32197400
PB_novel_21825_0	chr19	+	214	1	Intergenic	novelGene_155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTTTTAAAAAAATAAAAA	NA	False	NA	NA	False	AATAAA	-23	NA	32287113	32287327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_32287100_32287300
PB_novel_21830_0	chr19	+	164	1	Intergenic	novelGene_156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	32562443	32562607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_32562400_32562600
PB_novel_21832_0	chr19	-	182	1	Intergenic	novelGene_157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	32655839	32655657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_32655700_32655800
PB_novel_21838_0	chr19	+	177	1	Intergenic	novelGene_158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	32699517	32699694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_32699500_32699700
PB_novel_21844_0	chr19	-	178	1	Intergenic	novelGene_159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAAAGTAAAGA	6298	False	NA	NA	False	NA	NA	NA	32751078	32750900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_32750900_32751100
PB_novel_21847_0	chr19	-	2563	1	Antisense	novelGene_ENSMUSG00000013663.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	387	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32800087	32797524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_-_32797500_32800100
PB_novel_21848_0	chr19	+	188	1	Intergenic	novelGene_160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAAGAAAATAACTA	2	False	NA	NA	False	NA	NA	NA	32805449	32805637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_32805400_32805600
PB_novel_21852_0	chr19	+	184	1	Intergenic	novelGene_161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	32850911	32851095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_32850900_32851100
PB_novel_21855_0	chr19	+	157	1	Intergenic	novelGene_162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAATTA	2005	False	NA	NA	False	NA	NA	NA	32962155	32962312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_32962200_32962300
PB_novel_21859_0	chr19	+	176	1	Intergenic	novelGene_163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACTTG	NA	False	NA	NA	False	NA	NA	NA	33591947	33592123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_33591900_33592100
PB_novel_21860_0	chr19	+	2490	2	NNC	ENSMUSG00000037603.8	novel	507	2	NA	NA	-8	1972	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAT	NA	False	NA	NA	False	AATAAA	-39	NA	33800299	33804440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr19_+_33800660_33802310
PB_novel_21863_0	chr19	-	293	1	Intergenic	novelGene_164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34174936	34174643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_34174600_34174900
PB_novel_21869_0	chr19	-	2597	1	NIC	ENSMUSG00000033610.17	novel	7414	7	NA	NA	323	-36400	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAATAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	34856532	34853935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_34853900_34856500
PB_novel_21870_0	chr19	+	180	1	Intergenic	novelGene_165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAAAAAGTAGAAA	NA	False	NA	NA	False	NA	NA	NA	34863973	34864153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_34864000_34864200
PB_novel_21871_0	chr19	-	178	1	Intergenic	novelGene_166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTTTTTTAAAAAAGA	7854	False	NA	NA	False	NA	NA	NA	34871604	34871426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_34871400_34871600
PB_novel_21882_0	chr19	+	176	1	Intergenic	novelGene_167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	36446783	36446959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_36446800_36447000
PB_novel_21893_0	chr19	-	176	1	Intergenic	novelGene_168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	36808131	36807955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_36808000_36808100
PB_novel_21895_0	chr19	+	3180	1	Genic_Genomic	ENSMUSG00000024811.12	novel	NA	NA	NA	NA	-3	-17604	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36811628	36814808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_+_36811600_36814800
PB_novel_21897_0	chr19	-	177	1	Intergenic	novelGene_169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	36833146	36832969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_36833000_36833100
PB_novel_21899_0	chr19	-	175	1	Intergenic	novelGene_170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	36842005	36841830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_36841800_36842000
PB_novel_21908_0	chr19	+	183	1	Intergenic	novelGene_171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTTAAAAAAAAAAAGACA	937	False	NA	NA	False	NA	NA	NA	36891739	36891922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_36891700_36891900
PB_novel_21914_0	chr19	-	383	1	Intergenic	novelGene_172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAGACTATTAGAAGAC	6149	False	NA	NA	False	NA	NA	NA	36919892	36919509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_36919500_36919900
PB_novel_21915_0	chr19	+	166	1	Intergenic	novelGene_173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	4377	False	NA	NA	False	NA	NA	NA	36934407	36934573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_36934400_36934600
PB_novel_21920_0	chr19	-	119	1	Intergenic	novelGene_174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAATCAAAATAGCA	NA	False	NA	NA	False	NA	NA	NA	36974300	36974181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_36974200_36974300
PB_novel_21922_0	chr19	+	169	1	Intergenic	novelGene_175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAGCA	NA	False	NA	NA	False	NA	NA	NA	36975716	36975885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_36975700_36975900
PB_novel_21925_0	chr19	-	170	1	Intergenic	novelGene_176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGGAAAAAAAGAACAATG	NA	False	NA	NA	False	NA	NA	NA	37082424	37082254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_37082300_37082400
PB_novel_21926_0	chr19	-	1970	1	FSM	ENSMUSG00002075338.1	ENSMUST00020181851.1	78	1	13	-1905	13	1905	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAGAA	1159	False	NA	NA	False	NA	NA	NA	37126549	37124579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_37124600_37126500
PB_novel_21928_0	chr19	-	320	1	Intergenic	novelGene_177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37130595	37130275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_37130300_37130600
PB_novel_21936_0	chr19	-	172	1	Intergenic	novelGene_178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATCTCATATC	9645	False	NA	NA	False	NA	NA	NA	37343992	37343820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_37343800_37344000
PB_novel_21937_0	chr19	+	177	1	Intergenic	novelGene_179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37345471	37345648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_37345500_37345600
PB_novel_21943_0	chr19	-	176	1	Intergenic	novelGene_180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGCTTAAT	9011	False	NA	NA	False	NA	NA	NA	37367224	37367048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_37367000_37367200
PB_novel_21949_0	chr19	-	162	1	Intergenic	novelGene_181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	37513938	37513776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_37513800_37513900
PB_novel_21952_0	chr19	+	168	1	Intergenic	novelGene_182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATATTTTAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	37660945	37661113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_37660900_37661100
PB_novel_21969_0	chr19	+	156	1	Intergenic	novelGene_183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCAAAAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	38327460	38327616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_38327500_38327600
PB_novel_21976_0	chr19	-	180	1	Intergenic	novelGene_184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAACAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	38387029	38386849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_38386800_38387000
PB_novel_21982_0	chr19	-	178	1	Intergenic	novelGene_185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTTTTACTTCA	NA	False	NA	NA	False	NA	NA	NA	38531565	38531387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_38531400_38531600
PB_novel_21992_0	chr19	+	171	1	Intergenic	novelGene_186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	38911640	38911811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_38911600_38911800
PB_novel_21996_0	chr19	+	175	1	Intergenic	novelGene_187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	1599	False	NA	NA	False	NA	NA	NA	38951866	38952041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_38951900_38952000
PB_novel_22000_0	chr19	-	180	1	Intergenic	novelGene_188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTAAAAGAATAGAAATA	NA	False	NA	NA	False	NA	NA	NA	39020117	39019937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_39019900_39020100
PB_novel_22007_0	chr19	+	1174	1	Intergenic	novelGene_189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40257494	40258668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_40257500_40258700
PB_novel_22016_2	chr19	-	2828	1	FSM	ENSMUSG00000096592.2	ENSMUST00000120920.2	522	1	-693	-1613	-693	1613	mono-exon	FALSE	NA	NA	NA	NA	NA	699	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	40550195	40547367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_40547400_40550200
PB_novel_22020_1	chr19	+	2791	1	FSM	ENSMUSG00000094388.2	ENSMUST00000159764.2	522	1	-656	-1613	-656	1613	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAAAGACAT	NA	False	NA	NA	False	AATAAA	-12	NA	40610247	40613038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_40610200_40613000
PB_novel_22024_0	chr19	+	3653	1	FSM	ENSMUSG00000099118.3	ENSMUST00000183735.3	87	1	24	-3590	24	3590	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40883170	40886823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_+_40883200_40886800
PB_novel_22034_0	chr19	-	177	1	Intergenic	novelGene_191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACAAGGC	NA	False	NA	NA	False	NA	NA	NA	41411759	41411582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_41411600_41411800
PB_novel_22040_0	chr19	+	132	1	Intergenic	novelGene_192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAACAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	41430321	41430453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_41430300_41430500
PB_novel_22041_0	chr19	+	161	1	Intergenic	novelGene_193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATCTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41436759	41436920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_41436800_41436900
PB_novel_22043_0	chr19	-	172	1	Intergenic	novelGene_194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAATTAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	41437711	41437539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_41437500_41437700
PB_novel_22044_1	chr19	-	173	1	Intergenic	novelGene_195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	41464342	41464169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_41464200_41464300
PB_novel_22051_0	chr19	+	1671	1	Intergenic	novelGene_196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	AATAAA	-16	NA	41513725	41515396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_41513700_41515400
PB_novel_22055_0	chr19	-	5610	1	Intergenic	novelGene_197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCTCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41583626	41578016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_41578000_41583600
PB_novel_22057_0	chr19	-	175	1	Intergenic	novelGene_198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAACCAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	41620869	41620694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_41620700_41620900
PB_novel_22062_0	chr19	+	178	1	Intergenic	novelGene_199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGCCAAAGCGGAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	41785641	41785819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_41785600_41785800
PB_novel_22064_0	chr19	+	174	1	Intergenic	novelGene_200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATTTAAAAAAAAA	9864	False	NA	NA	False	NA	NA	NA	41858659	41858833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_41858700_41858800
PB_novel_22071_0	chr19	-	186	1	Intergenic	novelGene_201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAGTCAAA	5512	False	NA	NA	False	NA	NA	NA	41927785	41927599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_41927600_41927800
PB_novel_22077_0	chr19	+	177	1	Intergenic	novelGene_202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAGAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	42003866	42004043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_42003900_42004000
PB_novel_22082_1	chr19	+	173	1	Intergenic	novelGene_203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATTAAATTAAAAAA	4600	False	NA	NA	False	NA	NA	NA	42073312	42073485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_42073300_42073500
PB_novel_22087_0	chr19	-	150	1	Intergenic	novelGene_204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACTAAAAA	9780	False	NA	NA	False	NA	NA	NA	42126210	42126060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_42126100_42126200
PB_novel_22089_0	chr19	-	179	1	Intergenic	novelGene_205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAATGTATAAAAAAAA	5564	False	NA	NA	False	NA	NA	NA	42130426	42130247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_42130200_42130400
PB_novel_22092_0	chr19	+	179	1	Intergenic	novelGene_206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAAATGCTCATTC	NA	False	NA	NA	False	NA	NA	NA	42145671	42145850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_42145700_42145800
PB_novel_22094_0	chr19	-	1543	1	Antisense	novelGene_ENSMUSG00000018820.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	42182345	42180802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_-_42180800_42182300
PB_novel_22113_0	chr19	-	157	1	Intergenic	novelGene_207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	43448073	43447916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_43447900_43448100
PB_novel_22116_0	chr19	-	177	1	Intergenic	novelGene_208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	43566956	43566779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_43566800_43567000
PB_novel_22117_0	chr19	-	176	1	Intergenic	novelGene_209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	43622564	43622388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_43622400_43622600
PB_novel_22118_0	chr19	-	168	1	Intergenic	novelGene_210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43701762	43701594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_43701600_43701800
PB_novel_22120_0	chr19	+	2086	1	Antisense	novelGene_ENSMUSG00000040018.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43726879	43728965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_+_43726900_43729000
PB_novel_22132_0	chr19	+	174	1	Intergenic	novelGene_211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGACTGG	NA	False	NA	NA	False	NA	NA	NA	43932303	43932477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_43932300_43932500
PB_novel_22133_0	chr19	-	175	1	Intergenic	novelGene_212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	43940450	43940275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_43940300_43940400
PB_novel_22136_0	chr19	-	172	1	Intergenic	novelGene_213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAACAAAACAAAACAA	9101	False	NA	NA	False	NA	NA	NA	43959582	43959410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_43959400_43959600
PB_novel_22139_0	chr19	-	175	1	Intergenic	novelGene_214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44041426	44041251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_44041300_44041400
PB_novel_22144_0	chr19	-	171	1	Intergenic	novelGene_215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTAAAAAAAAAAAAGAGCT	3239	False	NA	NA	False	NA	NA	NA	44228441	44228270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_44228300_44228400
PB_novel_22151_0	chr19	-	175	1	Intergenic	novelGene_216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	44311300	44311125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_44311100_44311300
PB_novel_22159_0	chr19	+	180	1	Intergenic	novelGene_217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAAGGGC	6357	False	NA	NA	False	NA	NA	NA	44517594	44517774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_44517600_44517800
PB_novel_22160_0	chr19	+	167	1	Intergenic	novelGene_218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTTAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	44530209	44530376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_44530200_44530400
PB_novel_22163_0	chr19	+	176	1	Intergenic	novelGene_219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGGAGAA	NA	False	NA	NA	False	NA	NA	NA	44631628	44631804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_44631600_44631800
PB_novel_22166_0	chr19	-	159	1	Intergenic	novelGene_220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAACAAATAAATTTTTT	-13	True	NA	NA	False	NA	NA	NA	44696401	44696242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_44696200_44696400
PB_novel_22176_0	chr19	-	176	1	Intergenic	novelGene_221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAACAAAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	45011780	45011604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45011600_45011800
PB_novel_22177_0	chr19	-	172	1	Intergenic	novelGene_222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	45022752	45022580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45022600_45022800
PB_novel_22187_1	chr19	+	176	1	Intergenic	novelGene_226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	45276669	45276845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_45276700_45276800
PB_novel_22188_0	chr19	+	164	1	Intergenic	novelGene_223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTTAAAAAAAGAAAAAAAA	8265	False	NA	NA	False	NA	NA	NA	45243872	45244036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_45243900_45244000
PB_novel_22189_0	chr19	+	176	1	Intergenic	novelGene_224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAAATGAAAAT	NA	False	NA	NA	False	NA	NA	NA	45248411	45248587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_45248400_45248600
PB_novel_22190_0	chr19	+	172	1	Intergenic	novelGene_225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	45261941	45262113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_45261900_45262100
PB_novel_22193_0	chr19	-	176	1	Intergenic	novelGene_227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	45297968	45297792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45297800_45298000
PB_novel_22196_0	chr19	-	165	1	Intergenic	novelGene_228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGTTAAACTTGG	NA	False	NA	NA	False	NA	NA	NA	45359265	45359100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45359100_45359300
PB_novel_22199_0	chr19	-	3652	2	Antisense	novelGene_ENSMUSG00000025217.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTCTTTAC	NA	False	NA	NA	False	NA	NA	NA	45378742	45374736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_-_45376290_45376643
PB_novel_22200_0	chr19	-	172	1	Intergenic	novelGene_229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	45376503	45376331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45376300_45376500
PB_novel_22209_0	chr19	-	179	1	Intergenic	novelGene_230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAATAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	45549935	45549756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45549800_45549900
PB_novel_22210_0	chr19	+	169	1	Intergenic	novelGene_231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	2391	False	NA	NA	False	NA	NA	NA	45577542	45577711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_45577500_45577700
PB_novel_22228_0	chr19	-	174	1	Intergenic	novelGene_232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGGGA	110	False	NA	NA	False	NA	NA	NA	45783935	45783761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45783800_45783900
PB_novel_22230_0	chr19	-	237	1	Intergenic	novelGene_233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45799313	45799076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45799100_45799300
PB_novel_22234_0	chr19	-	181	1	Intergenic	novelGene_234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACTAAACAGACA	745	False	NA	NA	False	NA	NA	NA	45839268	45839087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45839100_45839300
PB_novel_22235_0	chr19	-	177	1	Intergenic	novelGene_235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45841267	45841090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45841100_45841300
PB_novel_22238_0	chr19	+	177	1	Intergenic	novelGene_236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTG	NA	False	NA	NA	False	NA	NA	NA	45855045	45855222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_45855000_45855200
PB_novel_22241_1	chr19	+	176	1	Intergenic	novelGene_237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45918790	45918966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_45918800_45919000
PB_novel_22242_0	chr19	-	171	1	Intergenic	novelGene_238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45924310	45924139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45924100_45924300
PB_novel_22245_1	chr19	-	181	1	Intergenic	novelGene_239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAGAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	45958565	45958384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_45958400_45958600
PB_novel_22249_0	chr19	+	164	1	Intergenic	novelGene_240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATTAAAAAGAAACA	NA	False	NA	NA	False	NA	NA	NA	45998124	45998288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_45998100_45998300
PB_novel_22251_0	chr19	+	177	1	Intergenic	novelGene_241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2941	False	NA	NA	False	NA	NA	NA	46006448	46006625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_46006400_46006600
PB_novel_22253_0	chr19	-	168	1	Intergenic	novelGene_242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	46012891	46012723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_46012700_46012900
PB_novel_22259_0	chr19	-	178	1	Intergenic	novelGene_243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATGTGG	1748	False	NA	NA	False	NA	NA	NA	46043789	46043611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_46043600_46043800
PB_novel_22273_0	chr19	+	173	1	Intergenic	novelGene_244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46215530	46215703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_46215500_46215700
PB_novel_22274_0	chr19	+	159	1	Intergenic	novelGene_245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAGAAAACA	9269	False	NA	NA	False	NA	NA	NA	46277115	46277274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_46277100_46277300
PB_novel_22277_0	chr19	-	175	1	Intergenic	novelGene_246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAATTTAAAAAA	1696	False	NA	NA	False	NA	NA	NA	46348566	46348391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_46348400_46348600
PB_novel_22286_0	chr19	+	174	1	Intergenic	novelGene_247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	46450540	46450714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_46450500_46450700
PB_novel_22288_1	chr19	-	1227	1	Antisense	novelGene_ENSMUSG00000025034.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	9607	False	NA	NA	False	AATAGA	-26	NA	46491335	46490108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_-_46490100_46491300
PB_novel_22288_4	chr19	-	2238	6	Antisense	novelGene_ENSMUSG00000025034.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAGA	-27	NA	46503910	46490107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_-_46491451_46501159_46501256_46501544_46501779_46502889_46502929_46503063_46503175_46503495
PB_novel_22291_0	chr19	-	177	1	Intergenic	novelGene_249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	46527920	46527743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_46527700_46527900
PB_novel_22295_0	chr19	-	176	1	Intergenic	novelGene_251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46560171	46559995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_46560000_46560200
PB_novel_22299_0	chr19	-	135	1	Intergenic	novelGene_250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	3876	False	NA	NA	False	NA	NA	NA	46554911	46554776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_46554800_46554900
PB_novel_22301_0	chr19	-	146	1	Intergenic	novelGene_252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	46640097	46639951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_46640000_46640100
PB_novel_22308_0	chr19	-	174	1	Intergenic	novelGene_253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGAAGGCTA	NA	False	NA	NA	False	NA	NA	NA	46744549	46744375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_46744400_46744500
PB_novel_22311_0	chr19	-	172	1	Intergenic	novelGene_254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	46762416	46762244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_46762200_46762400
PB_novel_22324_0	chr19	+	142	1	Intergenic	novelGene_255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGACTCAGAT	621	False	NA	NA	False	NA	NA	NA	46988561	46988703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_46988600_46988700
PB_novel_22325_0	chr19	-	176	1	Intergenic	novelGene_256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46989268	46989092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_46989100_46989300
PB_novel_22331_0	chr19	-	164	1	Intergenic	novelGene_257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	294	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTTTAAAAAAAAAAAAGT	1805	False	NA	NA	False	NA	NA	NA	47049064	47048900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_47048900_47049100
PB_novel_22332_0	chr19	+	175	1	Intergenic	novelGene_258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAACAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47053470	47053645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_47053500_47053600
PB_novel_22347_0	chr19	+	173	1	Intergenic	novelGene_259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTAAAAAAAAAAACCCAC	NA	False	NA	NA	False	NA	NA	NA	47533145	47533318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_47533100_47533300
PB_novel_22348_0	chr19	-	173	1	Intergenic	novelGene_260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATAATACTTTAA	7095	False	NA	NA	False	NA	NA	NA	47538741	47538568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_47538600_47538700
PB_novel_22356_0	chr19	-	168	1	Intergenic	novelGene_261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAAAAGATT	2686	False	NA	NA	False	NA	NA	NA	47862269	47862101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_47862100_47862300
PB_novel_22361_0	chr19	+	175	1	Intergenic	novelGene_262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	51729150	51729325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_51729200_51729300
PB_novel_22365_0	chr19	+	151	1	Intergenic	novelGene_263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GATATAATAATAAATAAGTA	NA	False	NA	NA	False	NA	NA	NA	53025021	53025172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_53025000_53025200
PB_novel_22388_0	chr19	-	3773	1	NIC	ENSMUSG00000025024.8	novel	1992	6	NA	NA	1596	413	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53376257	53372484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr19_-_53372500_53376300
PB_novel_22389_0	chr19	-	138	1	Intergenic	novelGene_264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7471	False	NA	NA	False	NA	NA	NA	53383134	53382996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_53383000_53383100
PB_novel_22390_0	chr19	-	1790	1	Intergenic	novelGene_265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAGAAAAAAAAAAAA	5526	False	NA	NA	False	NA	NA	NA	53385079	53383289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_53383300_53385100
PB_novel_22391_0	chr19	-	157	1	Intergenic	novelGene_266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	53395440	53395283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_53395300_53395400
PB_novel_22392_0	chr19	-	139	2	Intergenic	novelGene_267	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATAAACAAACG	NA	False	NA	NA	False	NA	NA	NA	53402113	53401942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_53401985_53402016
PB_novel_22392_1	chr19	-	176	1	Intergenic	novelGene_268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATAAACAAACG	NA	False	NA	NA	False	NA	NA	NA	53402118	53401942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_53401900_53402100
PB_novel_22393_0	chr19	-	176	1	Intergenic	novelGene_269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAGAAACC	NA	False	NA	NA	False	NA	NA	NA	53510315	53510139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_53510100_53510300
PB_novel_22400_0	chr19	-	177	1	Intergenic	novelGene_270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAAAAAAGATGCTTG	1842	False	NA	NA	False	NA	NA	NA	53598167	53597990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_53598000_53598200
PB_novel_22402_0	chr19	+	174	1	Intergenic	novelGene_271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAGAGAATAAT	1905	False	NA	NA	False	NA	NA	NA	53625072	53625246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_53625100_53625200
PB_novel_22403_0	chr19	-	193	1	Intergenic	novelGene_272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAATTAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	53632751	53632558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_53632600_53632800
PB_novel_22404_0	chr19	+	161	1	Intergenic	novelGene_273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAGAAAAAGAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	53656581	53656742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_53656600_53656700
PB_novel_22408_0	chr19	+	177	1	Intergenic	novelGene_274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53712359	53712536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_53712400_53712500
PB_novel_22421_0	chr19	+	183	1	Intergenic	novelGene_275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAAAGATTGGTTT	NA	False	NA	NA	False	NA	NA	NA	55344450	55344633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_55344400_55344600
PB_novel_22424_0	chr19	-	173	1	Intergenic	novelGene_276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTTAAAAGAAACAGATAA	NA	False	NA	NA	False	NA	NA	NA	55545932	55545759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_55545800_55545900
PB_novel_22429_0	chr19	-	175	1	Intergenic	novelGene_277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACAAAAAGGGTTTG	1523	False	NA	NA	False	NA	NA	NA	56388512	56388337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_56388300_56388500
PB_novel_22434_2	chr19	+	1088	1	Antisense	novelGene_ENSMUSG00000025077.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56535465	56536553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_+_56535500_56536600
PB_novel_22434_3	chr19	+	818	2	Antisense	novelGene_ENSMUSG00000025077.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56535465	56536553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_+_56536135_56536404
PB_novel_22437_0	chr19	-	2570	1	Antisense	novelGene_ENSMUSG00000025078.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGTCAAG	NA	False	NA	NA	False	NA	NA	NA	56591327	56588757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr19_-_56588800_56591300
PB_novel_22443_0	chr19	+	155	1	Intergenic	novelGene_278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAATAAATTTTAA	NA	False	NA	NA	False	NA	NA	NA	56780096	56780251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_56780100_56780300
PB_novel_22449_0	chr19	+	132	1	Intergenic	novelGene_279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	57243260	57243392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_57243300_57243400
PB_novel_22450_0	chr19	+	170	1	Intergenic	novelGene_280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	57285505	57285675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_57285500_57285700
PB_novel_22456_0	chr19	-	177	1	Intergenic	novelGene_281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATTAGT	NA	False	NA	NA	False	NA	NA	NA	57438000	57437823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_57437800_57438000
PB_novel_22459_0	chr19	-	169	1	Intergenic	novelGene_282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	57566520	57566351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_57566400_57566500
PB_novel_22467_0	chr19	-	183	1	Intergenic	novelGene_283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATAGAGAGACAGAGA	NA	False	NA	NA	False	NA	NA	NA	57718285	57718102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_57718100_57718300
PB_novel_22476_0	chr19	+	1311	1	Intergenic	novelGene_284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-29	NA	58794651	58795962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_58794700_58796000
PB_novel_22493_0	chr19	-	175	1	Intergenic	novelGene_285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGGATGACAAA	NA	False	NA	NA	False	NA	NA	NA	60735745	60735570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_60735600_60735700
PB_novel_22503_0	chr19	+	183	1	Intergenic	novelGene_286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	60854518	60854701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_60854500_60854700
PB_novel_22505_0	chr19	-	171	1	Intergenic	novelGene_287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATAAAATAAATCTTAAAA	9962	False	NA	NA	False	NA	NA	NA	60864604	60864433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_60864400_60864600
PB_novel_22512_0	chr19	-	171	1	Intergenic	novelGene_288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAATAAAAAAAAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	61170587	61170416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_61170400_61170600
PB_novel_22515_0	chr19	+	171	1	Intergenic	novelGene_289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACACAAATACATAACTAAAT	NA	False	NA	NA	False	NA	NA	NA	61258654	61258825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_61258700_61258800
PB_novel_22517_1	chr19	-	1540	1	FSM	ENSMUSG00000118197.2	ENSMUST00000237261.2	243	1	-182	-1115	-182	1115	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAAAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	61293900	61292360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr19_-_61292400_61293900
PB_novel_22517_6	chr19	-	2555	3	Genic_Genomic	ENSMUSG00000095993.2	novel	168	1	NA	NA	-16435	1718	multi-exon	FALSE	canonical	2	4	junction_1	19	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTTAAAAATATAAATTAA	NA	False	NA	NA	False	NA	NA	NA	61301942	61283621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_-_61285953_61287295_61287423_61301845
PB_novel_22517_7	chr19	-	2635	4	Genic_Genomic	ENSMUSG00000095993.2	novel	168	1	NA	NA	-16453	1719	multi-exon	FALSE	canonical	3	25	junction_1	10.4243305140746	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTAAAAATATAAATTAAA	NA	False	NA	NA	False	NA	NA	NA	61301960	61283620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr19_-_61285953_61287055_61287117_61287295_61287423_61301845
PB_novel_22520_0	chr1_GL456211v1_random	-	284	1	Intergenic	novelGene_9448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAATAAATATT	NA	False	NA	NA	False	NA	NA	NA	1377	1093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_GL456211v1_random_-_1100_1400
PB_novel_22522_0	chr1_GL456211v1_random	+	176	1	Intergenic	novelGene_9449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	52321	52497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_GL456211v1_random_+_52300_52500
PB_novel_22535_0	chr2	+	177	1	Intergenic	novelGene_8677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	3362299	3362476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_3362300_3362500
PB_novel_22542_0	chr2	-	172	1	Intergenic	novelGene_8678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAGTATGAAAAA	NA	False	NA	NA	False	NA	NA	NA	3568714	3568542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_3568500_3568700
PB_novel_22545_0	chr2	-	168	1	Intergenic	novelGene_8679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGATGTAAAA	NA	False	NA	NA	False	NA	NA	NA	4343233	4343065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_4343100_4343200
PB_novel_22549_0	chr2	+	176	1	Intergenic	novelGene_8680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	4535900	4536076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_4535900_4536100
PB_novel_22554_0	chr2	+	169	1	Intergenic	novelGene_8681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	4646485	4646654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_4646500_4646700
PB_novel_22557_0	chr2	-	177	1	Intergenic	novelGene_8682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGGAACAG	NA	False	NA	NA	False	NA	NA	NA	4698430	4698253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_4698300_4698400
PB_novel_22559_0	chr2	+	177	1	Intergenic	novelGene_8683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGTAAGTAT	NA	False	NA	NA	False	NA	NA	NA	4717199	4717376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_4717200_4717400
PB_novel_22560_0	chr2	-	176	1	Intergenic	novelGene_8684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	4743165	4742989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_4743000_4743200
PB_novel_22566_0	chr2	-	180	1	Intergenic	novelGene_8685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4890734	4890554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_4890600_4890700
PB_novel_22569_0	chr2	-	178	1	Intergenic	novelGene_8686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAAAAAACAACT	NA	False	NA	NA	False	NA	NA	NA	4899947	4899769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_4899800_4899900
PB_novel_22570_0	chr2	-	157	1	Intergenic	novelGene_8687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	4903306	4903149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_4903100_4903300
PB_novel_22571_0	chr2	-	175	1	Intergenic	novelGene_8688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAATTAAA	NA	False	NA	NA	False	NA	NA	NA	4908524	4908349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_4908300_4908500
PB_novel_22577_0	chr2	+	176	1	Intergenic	novelGene_8689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGTGAACGCTC	NA	False	NA	NA	False	NA	NA	NA	4973148	4973324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_4973100_4973300
PB_novel_22580_0	chr2	+	3948	1	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACCAAAAAAAAAAAAAAA	4504	False	NA	NA	False	NA	NA	NA	4998975	5002923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_4999000_5002900
PB_novel_22584_0	chr2	-	170	1	Intergenic	novelGene_8690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	5034103	5033933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_5033900_5034100
PB_novel_22585_0	chr2	-	173	1	Intergenic	novelGene_8691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	5036613	5036440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_5036400_5036600
PB_novel_22588_0	chr2	+	158	1	Intergenic	novelGene_8692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAATAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5056334	5056492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_5056300_5056500
PB_novel_22590_0	chr2	-	159	1	Intergenic	novelGene_8693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	4080	False	NA	NA	False	NA	NA	NA	5079787	5079628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_5079600_5079800
PB_novel_22600_1	chr2	+	175	1	Intergenic	novelGene_8694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACTCCTA	NA	False	NA	NA	False	NA	NA	NA	5673595	5673770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_5673600_5673800
PB_novel_22602_0	chr2	+	1556	1	Intergenic	novelGene_8695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGCAAAAGGGGAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	5823093	5824649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_5823100_5824600
PB_novel_22603_0	chr2	-	171	1	Intergenic	novelGene_8696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAATGT	2412	False	NA	NA	False	NA	NA	NA	5842539	5842368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_5842400_5842500
PB_novel_22613_0	chr2	-	176	1	Intergenic	novelGene_8697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGCTTTAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5950126	5949950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_5950000_5950100
PB_novel_22616_0	chr2	-	175	1	Intergenic	novelGene_8698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5968844	5968669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_5968700_5968800
PB_novel_22622_0	chr2	-	170	1	Intergenic	novelGene_8699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTAGAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	5991598	5991428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_5991400_5991600
PB_novel_22622_3	chr2	-	171	2	Antisense	novelGene_ENSMUSG00000043241.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	84	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTAGAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	5995177	5991428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_5991551_5995128
PB_novel_22625_0	chr2	-	174	1	Intergenic	novelGene_8700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	5995179	5995005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_5995000_5995200
PB_novel_22626_0	chr2	+	177	1	Intergenic	novelGene_8701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6016408	6016585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_6016400_6016600
PB_novel_22627_0	chr2	-	184	1	Intergenic	novelGene_8702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6041973	6041789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_6041800_6042000
PB_novel_22628_0	chr2	-	176	1	Intergenic	novelGene_8703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	6058946	6058770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_6058800_6058900
PB_novel_22638_0	chr2	+	153	1	Intergenic	novelGene_8704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAGAGTAATAATCCA	NA	False	NA	NA	False	NA	NA	NA	6756887	6757040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_6756900_6757000
PB_novel_22641_0	chr2	+	176	1	Intergenic	novelGene_8705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAAGTGGC	NA	False	NA	NA	False	NA	NA	NA	9905055	9905231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_9905100_9905200
PB_novel_22642_0	chr2	+	159	1	Intergenic	novelGene_8706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAATAAAAATTCT	2849	False	NA	NA	False	NA	NA	NA	9909136	9909295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_9909100_9909300
PB_novel_22646_0	chr2	+	179	1	Intergenic	novelGene_8707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGGAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10036287	10036466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_10036300_10036500
PB_novel_22649_0	chr2	-	159	1	Intergenic	novelGene_8708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAACAAATATTTAAAA	9884	False	NA	NA	False	NA	NA	NA	10087240	10087081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_10087100_10087200
PB_novel_22650_0	chr2	+	285	1	Intergenic	novelGene_8709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10267925	10268210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_10267900_10268200
PB_novel_22652_0	chr2	+	177	1	Intergenic	novelGene_8710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAACCTGAGGAT	NA	False	NA	NA	False	NA	NA	NA	10310343	10310520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_10310300_10310500
PB_novel_22670_0	chr2	+	175	1	Intergenic	novelGene_8711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGGGAAGAAAAAAAGA	3284	False	NA	NA	False	NA	NA	NA	11525369	11525544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_11525400_11525500
PB_novel_22685_0	chr2	-	3890	1	Genic_Genomic	ENSMUSG00000026726.11	novel	NA	NA	NA	NA	179268	3868	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	2099	False	NA	NA	False	NA	NA	NA	13281170	13277280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_13277300_13281200
PB_novel_22686_0	chr2	-	182	1	Intergenic	novelGene_8712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	13512748	13512566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_13512600_13512700
PB_novel_22691_0	chr2	+	156	1	Intergenic	novelGene_8713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAATAAAACAAACAAACA	9779	False	NA	NA	False	NA	NA	NA	14084005	14084161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_14084000_14084200
PB_novel_22692_0	chr2	-	6412	1	Intergenic	novelGene_8714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	14130081	14123669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_14123700_14130100
PB_novel_22694_0	chr2	-	182	1	Intergenic	novelGene_8715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGAGCTGATGGAA	NA	False	NA	NA	False	NA	NA	NA	14270482	14270300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_14270300_14270500
PB_novel_22701_0	chr2	+	4475	1	Intergenic	novelGene_8716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGAAATAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	16032763	16037238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_16032800_16037200
PB_novel_22702_0	chr2	-	175	1	Intergenic	novelGene_8717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16076376	16076201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_16076200_16076400
PB_novel_22703_0	chr2	+	173	1	Intergenic	novelGene_8718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16313276	16313449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_16313300_16313400
PB_novel_22707_0	chr2	+	172	1	Intergenic	novelGene_8719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	16609775	16609947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_16609800_16609900
PB_novel_22713_0	chr2	+	159	1	Intergenic	novelGene_8720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAAAAATAAATAAATCTAA	NA	False	NA	NA	False	NA	NA	NA	17823750	17823909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_17823800_17823900
PB_novel_22714_0	chr2	+	172	1	Intergenic	novelGene_8721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	17850489	17850661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_17850500_17850700
PB_novel_22720_1	chr2	+	1208	1	Intergenic	novelGene_8723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACCAAAACCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17940983	17942191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_17941000_17942200
PB_novel_22721_0	chr2	+	2393	2	Intergenic	novelGene_8722	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	37	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATTTCTGCAAGAAAAGA	NA	False	NA	NA	False	AATAAA	-15	NA	17940976	17953266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_17941086_17950982
PB_novel_22723_0	chr2	+	178	1	Intergenic	novelGene_8724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGCT	NA	False	NA	NA	False	NA	NA	NA	17974647	17974825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_17974600_17974800
PB_novel_22724_1	chr2	-	177	1	Intergenic	novelGene_8725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	231	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAATCCTCCAGC	NA	False	NA	NA	False	NA	NA	NA	18093186	18093009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_18093000_18093200
PB_novel_22736_0	chr2	+	177	1	Intergenic	novelGene_8726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAAAATAAAGT	8368	False	NA	NA	False	NA	NA	NA	18114092	18114269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_18114100_18114300
PB_novel_22741_0	chr2	-	3356	1	FSM	ENSMUSG00000081619.2	ENSMUST00000118087.2	414	1	386	-3328	386	3328	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18183867	18180511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_18180500_18183900
PB_novel_22744_0	chr2	-	172	1	Intergenic	novelGene_8727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAACAATTAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	18265877	18265705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_18265700_18265900
PB_novel_22748_0	chr2	+	157	1	Intergenic	novelGene_8728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAATAAAATTTTAA	NA	False	NA	NA	False	NA	NA	NA	18349006	18349163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_18349000_18349200
PB_novel_22758_0	chr2	+	181	1	Intergenic	novelGene_8729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATTTAAAAC	7535	False	NA	NA	False	NA	NA	NA	19308123	19308304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_19308100_19308300
PB_novel_22760_0	chr2	+	175	1	Intergenic	novelGene_8730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAGAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19410981	19411156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_19411000_19411200
PB_novel_22778_0	chr2	+	181	1	Intergenic	novelGene_8731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAATGA	395	False	NA	NA	False	NA	NA	NA	20672264	20672445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_20672300_20672400
PB_novel_22782_0	chr2	-	171	1	Intergenic	novelGene_8732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATTTC	NA	False	NA	NA	False	NA	NA	NA	20711528	20711357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_20711400_20711500
PB_novel_22791_0	chr2	-	2968	1	Intergenic	novelGene_8733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20824856	20821888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_20821900_20824900
PB_novel_22792_0	chr2	+	172	1	Intergenic	novelGene_8734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAGAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	20835312	20835484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_20835300_20835500
PB_novel_22811_0	chr2	-	92	1	FSM	ENSMUSG00000083563.2	ENSMUST00000117219.2	1545	1	1519	-66	1519	66	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAGATATTAGTAAAATC	NA	False	NA	NA	False	NA	NA	NA	22478140	22478048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_22478000_22478100
PB_novel_22818_0	chr2	-	158	1	Intergenic	novelGene_8735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	22814355	22814197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_22814200_22814400
PB_novel_22819_1	chr2	-	177	1	Intergenic	novelGene_8736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	22816392	22816215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_22816200_22816400
PB_novel_22822_0	chr2	+	1750	1	Intergenic	novelGene_8737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1620	False	NA	NA	False	NA	NA	NA	22876466	22878216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_22876500_22878200
PB_novel_22825_0	chr2	+	173	1	Intergenic	novelGene_8738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATTAGT	8613	False	NA	NA	False	NA	NA	NA	22923285	22923458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_22923300_22923500
PB_novel_22826_0	chr2	+	177	1	Intergenic	novelGene_8739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATT	2220	False	NA	NA	False	NA	NA	NA	22930779	22930956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_22930800_22931000
PB_novel_22840_0	chr2	+	176	1	Intergenic	novelGene_8740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	24744281	24744457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_24744300_24744500
PB_novel_22841_0	chr2	+	178	1	Intergenic	novelGene_8741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	24750460	24750638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_24750500_24750600
PB_novel_22842_0	chr2	-	171	1	Intergenic	novelGene_8742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	24775534	24775363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_24775400_24775500
PB_novel_22843_0	chr2	-	173	1	Intergenic	novelGene_8745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24841831	24841658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_24841700_24841800
PB_novel_22844_0	chr2	+	171	1	Intergenic	novelGene_8743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	24805024	24805195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_24805000_24805200
PB_novel_22845_0	chr2	+	159	1	Intergenic	novelGene_8744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	24805395	24805554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_24805400_24805600
PB_novel_22856_0	chr2	-	174	1	Intergenic	novelGene_8746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAGACAGAATATT	9352	False	NA	NA	False	NA	NA	NA	24925829	24925655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_24925700_24925800
PB_novel_22860_0	chr2	-	175	1	Intergenic	novelGene_8747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25082905	25082730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_25082700_25082900
PB_novel_22866_0	chr2	-	176	1	Intergenic	novelGene_8748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25146913	25146737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_25146700_25146900
PB_novel_22868_0	chr2	-	161	1	Intergenic	novelGene_8749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	25149399	25149238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_25149200_25149400
PB_novel_22873_0	chr2	-	176	1	Antisense	novelGene_ENSMUSG00000085830.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAATCTGAAAAAT	7694	False	NA	NA	False	NA	NA	NA	25189097	25188921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_25188900_25189100
PB_novel_22876_2	chr2	+	156	1	Intergenic	novelGene_8750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATC	3672	False	NA	NA	False	NA	NA	NA	25229095	25229251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_25229100_25229300
PB_novel_22881_0	chr2	+	176	1	Intergenic	novelGene_8751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	297	False	NA	NA	False	NA	NA	NA	25255972	25256148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_25256000_25256100
PB_novel_22883_1	chr2	+	278	1	Intergenic	novelGene_8752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGATCCA	2111	False	NA	NA	False	NA	NA	NA	25257786	25258064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_25257800_25258100
PB_novel_22886_0	chr2	+	173	1	Intergenic	novelGene_8753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTTTAACAACAAAAAAA	5779	False	NA	NA	False	NA	NA	NA	25278281	25278454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_25278300_25278500
PB_novel_22888_0	chr2	+	174	2	Antisense	novelGene_ENSMUSG00000083528.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATTTATT	32	False	NA	NA	False	NA	NA	NA	25341749	25445747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_25341845_25445668
PB_novel_22892_0	chr2	+	174	1	Intergenic	novelGene_8754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATTTATT	NA	False	NA	NA	False	NA	NA	NA	25445573	25445747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_25445600_25445700
PB_novel_22893_0	chr2	-	3278	1	NIC	ENSMUSG00000015087.15	novel	3230	15	NA	NA	48	-8643	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAGAAAAAAAAAAAAAA	3331	False	NA	NA	False	AAGAAA	-44	NA	25498420	25495142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_25495100_25498400
PB_novel_22904_0	chr2	+	176	1	Intergenic	novelGene_8755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGGGAG	NA	False	NA	NA	False	NA	NA	NA	25959890	25960066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_25959900_25960100
PB_novel_22905_0	chr2	+	180	1	Intergenic	novelGene_8756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGTCAGGGCTA	NA	False	NA	NA	False	NA	NA	NA	26017416	26017596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_26017400_26017600
PB_novel_22908_0	chr2	+	179	1	Intergenic	novelGene_8757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGTTA	NA	False	NA	NA	False	NA	NA	NA	26123517	26123696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_26123500_26123700
PB_novel_22909_0	chr2	+	171	1	Intergenic	novelGene_8758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26176903	26177074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_26176900_26177100
PB_novel_22913_0	chr2	-	4808	1	NIC	ENSMUSG00000026924.18	novel	8797	31	NA	NA	1156	2190	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26328611	26323803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_26323800_26328600
PB_novel_22914_0	chr2	+	177	1	Intergenic	novelGene_8759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACTCTC	NA	False	NA	NA	False	NA	NA	NA	26414005	26414182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_26414000_26414200
PB_novel_22915_0	chr2	-	186	1	Intergenic	novelGene_8760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAATAACAA	5904	False	NA	NA	False	NA	NA	NA	26510831	26510645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_26510600_26510800
PB_novel_22918_0	chr2	-	176	1	Intergenic	novelGene_8761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	26543679	26543503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_26543500_26543700
PB_novel_22920_0	chr2	-	175	1	Intergenic	novelGene_8762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	26744148	26743973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_26744000_26744100
PB_novel_22921_1	chr2	+	135	1	Intergenic	novelGene_8763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	26755691	26755826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_26755700_26755800
PB_novel_22922_0	chr2	+	173	1	Intergenic	novelGene_8764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	26783280	26783453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_26783300_26783500
PB_novel_22932_0	chr2	+	170	1	Intergenic	novelGene_8765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATTAAAAAAAAGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	27327235	27327405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_27327200_27327400
PB_novel_22936_0	chr2	+	119	1	Intergenic	novelGene_8766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	27375722	27375841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_27375700_27375800
PB_novel_22942_1	chr2	-	168	1	Intergenic	novelGene_8767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	27408015	27407847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_27407800_27408000
PB_novel_22943_0	chr2	-	182	1	Intergenic	novelGene_8768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	27412151	27411969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_27412000_27412200
PB_novel_22953_0	chr2	+	172	1	Intergenic	novelGene_8769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	28329411	28329583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_28329400_28329600
PB_novel_22957_0	chr2	-	176	1	Intergenic	novelGene_8770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAAGAAAGGC	NA	False	NA	NA	False	NA	NA	NA	28391994	28391818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_28391800_28392000
PB_novel_22963_0	chr2	+	177	1	Intergenic	novelGene_8771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	328	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	28495263	28495440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_28495300_28495400
PB_novel_22966_0	chr2	+	176	1	Intergenic	novelGene_8772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAATAAGAAGGGA	5927	False	NA	NA	False	NA	NA	NA	28523410	28523586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_28523400_28523600
PB_novel_22972_0	chr2	-	179	1	Intergenic	novelGene_8773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TATAAAAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	28686057	28685878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_28685900_28686100
PB_novel_22973_0	chr2	-	158	1	Intergenic	novelGene_8774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAATAAATAAATCTT	5414	False	NA	NA	False	NA	NA	NA	28694319	28694161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_28694200_28694300
PB_novel_22975_0	chr2	-	176	1	Intergenic	novelGene_8775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28919187	28919011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_28919000_28919200
PB_novel_22977_0	chr2	+	200	1	Intergenic	novelGene_8776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	28925438	28925638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_28925400_28925600
PB_novel_22978_1	chr2	+	171	1	Intergenic	novelGene_8777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	28934225	28934396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_28934200_28934400
PB_novel_22980_0	chr2	+	177	1	Intergenic	novelGene_8778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	28939884	28940061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_28939900_28940100
PB_novel_22981_0	chr2	+	180	1	Intergenic	novelGene_8779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAGAAGGGACTG	NA	False	NA	NA	False	NA	NA	NA	28949261	28949441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_28949300_28949400
PB_novel_22983_0	chr2	+	184	1	Intergenic	novelGene_8780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	28991744	28991928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_28991700_28991900
PB_novel_22990_0	chr2	-	167	1	Intergenic	novelGene_8781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	8753	False	NA	NA	False	NA	NA	NA	29046312	29046145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_29046100_29046300
PB_novel_22991_0	chr2	+	158	1	Intergenic	novelGene_8782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAATTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29057769	29057927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_29057800_29057900
PB_novel_22997_0	chr2	-	177	1	Intergenic	novelGene_8783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATGA	NA	False	NA	NA	False	NA	NA	NA	29280135	29279958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_29280000_29280100
PB_novel_22999_2	chr2	+	179	1	Intergenic	novelGene_8784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	29332034	29332213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_29332000_29332200
PB_novel_23008_0	chr2	-	292	1	Intergenic	novelGene_8785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29577804	29577512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_29577500_29577800
PB_novel_23009_0	chr2	+	174	1	Intergenic	novelGene_8786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAATCACAATA	NA	False	NA	NA	False	NA	NA	NA	29577896	29578070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_29577900_29578100
PB_novel_23010_0	chr2	-	179	2	Antisense	novelGene_ENSMUSG00000039844.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAACCCCA	NA	False	NA	NA	False	NA	NA	NA	29599114	29585548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_29585581_29598967
PB_novel_23010_4	chr2	-	175	1	Intergenic	novelGene_8787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29599113	29598938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_29598900_29599100
PB_novel_23010_6	chr2	-	170	2	Antisense	novelGene_ENSMUSG00000039844.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	29599113	29585555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_29585565_29598952
PB_novel_23015_0	chr2	-	1582	1	Intergenic	novelGene_8788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATTAAAAACCTTGG	NA	False	NA	NA	False	NA	NA	NA	29661174	29659592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_29659600_29661200
PB_novel_23024_0	chr2	+	4617	1	NIC	ENSMUSG00000026790.20	novel	403	5	NA	NA	-1	1863	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	7232	False	NA	NA	False	NA	NA	NA	29779835	29784452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_29779800_29784500
PB_novel_23028_0	chr2	+	163	1	Intergenic	novelGene_8789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	29801073	29801236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_29801100_29801200
PB_novel_23034_0	chr2	-	172	1	Intergenic	novelGene_8790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	6669	False	NA	NA	False	NA	NA	NA	29863536	29863364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_29863400_29863500
PB_novel_23042_0	chr2	+	173	1	Intergenic	novelGene_8791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	29945850	29946023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_29945800_29946000
PB_novel_23043_0	chr2	-	177	1	Intergenic	novelGene_8792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	29949892	29949715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_29949700_29949900
PB_novel_23045_0	chr2	-	252	1	Antisense	novelGene_ENSMUSG00000054766.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-25	NA	29961978	29961726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_29961700_29962000
PB_novel_23049_0	chr2	-	170	1	Intergenic	novelGene_8793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	29978095	29977925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_29977900_29978100
PB_novel_23058_0	chr2	-	176	1	Intergenic	novelGene_8794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAACCAAAAGAATAA	NA	False	NA	NA	False	NA	NA	NA	30069076	30068900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_30068900_30069100
PB_novel_23061_1	chr2	+	175	2	Intergenic	novelGene_8795	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30091512	30280052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_30091561_30279925
PB_novel_23061_3	chr2	+	176	1	Intergenic	novelGene_8799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30279876	30280052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_30279900_30280100
PB_novel_23062_0	chr2	-	133	1	Intergenic	novelGene_8796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAACAAAACAA	1481	False	NA	NA	False	NA	NA	NA	30092179	30092046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_30092000_30092200
PB_novel_23070_0	chr2	-	177	1	Intergenic	novelGene_8797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAGAAAAAA	7023	False	NA	NA	False	NA	NA	NA	30171571	30171394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_30171400_30171600
PB_novel_23073_1	chr2	-	188	1	Intergenic	novelGene_8798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3670	False	NA	NA	False	NA	NA	NA	30202144	30201956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_30202000_30202100
PB_novel_23081_0	chr2	+	168	1	Intergenic	novelGene_8800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAATTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30349554	30349722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_30349600_30349700
PB_novel_23086_0	chr2	-	183	1	Intergenic	novelGene_8801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAACCTTTT	2844	False	NA	NA	False	NA	NA	NA	30592065	30591882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_30591900_30592100
PB_novel_23091_0	chr2	-	3368	1	Antisense	novelGene_ENSMUSG00000085491.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30697557	30694189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_30694200_30697600
PB_novel_23092_0	chr2	+	1381	1	NIC	ENSMUSG00000026857.10	novel	1387	4	NA	NA	-1	-6842	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30697967	30699348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_30698000_30699300
PB_novel_23101_0	chr2	+	181	1	Intergenic	novelGene_8802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGACCCAAA	NA	False	NA	NA	False	NA	NA	NA	30797134	30797315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_30797100_30797300
PB_novel_23103_0	chr2	-	186	1	Intergenic	novelGene_8803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAGAAAAGAAAAAA	7236	False	NA	NA	False	NA	NA	NA	30821033	30820847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_30820800_30821000
PB_novel_23110_0	chr2	+	234	1	Intergenic	novelGene_8804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATTAGGA	NA	False	NA	NA	False	NA	NA	NA	30861765	30861999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_30861800_30862000
PB_novel_23114_0	chr2	+	1998	1	Antisense	novelGene_ENSMUSG00000075415.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATTTAAAAAAAGAAAAAA	148	False	NA	NA	False	NA	NA	NA	30919667	30921665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_30919700_30921700
PB_novel_23115_0	chr2	+	176	1	Intergenic	novelGene_8805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAGAAAGAAAA	705	False	NA	NA	False	NA	NA	NA	30953690	30953866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_30953700_30953900
PB_novel_23121_0	chr2	-	159	1	Intergenic	novelGene_8806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAACAAACAAACAAACA	7180	False	NA	NA	False	NA	NA	NA	30975023	30974864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_30974900_30975000
PB_novel_23124_0	chr2	-	172	1	Intergenic	novelGene_8807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAATTTTTTAAAAATGA	NA	False	NA	NA	False	NA	NA	NA	30988009	30987837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_30987800_30988000
PB_novel_23125_0	chr2	+	178	1	Intergenic	novelGene_8808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6111	False	NA	NA	False	NA	NA	NA	30988474	30988652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_30988500_30988700
PB_novel_23129_0	chr2	-	176	1	Intergenic	novelGene_8809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATGC	3156	False	NA	NA	False	NA	NA	NA	31051047	31050871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_31050900_31051000
PB_novel_23130_0	chr2	-	169	1	Intergenic	novelGene_8810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATCAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	31065486	31065317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_31065300_31065500
PB_novel_23135_0	chr2	+	180	1	Intergenic	novelGene_8811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACATATTCAAAC	NA	False	NA	NA	False	NA	NA	NA	31118886	31119066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_31118900_31119100
PB_novel_23137_0	chr2	-	173	1	Intergenic	novelGene_8812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTAAAAAAAAAATCAAAGC	NA	False	NA	NA	False	NA	NA	NA	31142221	31142048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_31142000_31142200
PB_novel_23140_0	chr2	+	2746	1	NIC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	-13107	-22745	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCAAAAAAAAAAAAACAAGG	NA	False	NA	NA	False	NA	NA	NA	31374676	31377422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_31374700_31377400
PB_novel_23141_0	chr2	-	1555	1	Intergenic	novelGene_8813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	31380642	31379087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_31379100_31380600
PB_novel_23142_0	chr2	+	176	1	Intergenic	novelGene_8814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31421596	31421772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_31421600_31421800
PB_novel_23146_0	chr2	+	177	1	Intergenic	novelGene_8815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGAGAGAGAGAGAGAGA	978	False	NA	NA	False	NA	NA	NA	31477842	31478019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_31477800_31478000
PB_novel_23150_0	chr2	-	164	1	Intergenic	novelGene_8816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATAAAATTATAA	NA	False	NA	NA	False	NA	NA	NA	31574599	31574435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_31574400_31574600
PB_novel_23151_0	chr2	-	167	1	Intergenic	novelGene_8817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	31589288	31589121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_31589100_31589300
PB_novel_23157_0	chr2	-	172	1	Intergenic	novelGene_8818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAATAAAAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	31622533	31622361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_31622400_31622500
PB_novel_23159_0	chr2	+	167	1	Intergenic	novelGene_8819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31638604	31638771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_31638600_31638800
PB_novel_23163_0	chr2	+	196	1	Intergenic	novelGene_8820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	31799134	31799330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_31799100_31799300
PB_novel_23168_0	chr2	+	180	1	Intergenic	novelGene_8821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31916069	31916249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_31916100_31916200
PB_novel_23169_0	chr2	+	180	1	Intergenic	novelGene_8822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAATG	NA	False	NA	NA	False	NA	NA	NA	31919244	31919424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_31919200_31919400
PB_novel_23170_0	chr2	-	175	1	Intergenic	novelGene_8823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAACAAT	NA	False	NA	NA	False	NA	NA	NA	31930797	31930622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_31930600_31930800
PB_novel_23171_0	chr2	+	176	1	Intergenic	novelGene_8824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAAAATTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	31931803	31931979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_31931800_31932000
PB_novel_23173_0	chr2	+	177	1	Intergenic	novelGene_8825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	723	False	NA	NA	False	NA	NA	NA	31966406	31966583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_31966400_31966600
PB_novel_23174_0	chr2	+	154	1	Intergenic	novelGene_8826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATAATAAATAAATCTTAAA	5580	False	NA	NA	False	NA	NA	NA	31971263	31971417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_31971300_31971400
PB_novel_23176_0	chr2	+	175	1	Intergenic	novelGene_8827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAATAATAAGGTA	7442	False	NA	NA	False	NA	NA	NA	31998803	31998978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_31998800_31999000
PB_novel_23178_0	chr2	-	172	1	Intergenic	novelGene_8828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGATTGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	32026728	32026556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_32026600_32026700
PB_novel_23183_0	chr2	-	175	1	Intergenic	novelGene_8829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAATTAAAAATAAA	3680	False	NA	NA	False	NA	NA	NA	32061767	32061592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_32061600_32061800
PB_novel_23195_0	chr2	-	183	1	Intergenic	novelGene_8830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAAACAGAAACT	NA	False	NA	NA	False	NA	NA	NA	32264003	32263820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_32263800_32264000
PB_novel_23201_0	chr2	+	189	1	Intergenic	novelGene_8831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGTATTTTATAAA	NA	False	NA	NA	False	NA	NA	NA	32356876	32357065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_32356900_32357100
PB_novel_23202_0	chr2	+	174	1	Intergenic	novelGene_8832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACCAC	NA	False	NA	NA	False	NA	NA	NA	32358826	32359000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_32358800_32359000
PB_novel_23208_0	chr2	+	167	1	Intergenic	novelGene_8833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	3741	False	NA	NA	False	NA	NA	NA	32528766	32528933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_32528800_32528900
PB_novel_23210_0	chr2	-	176	1	Intergenic	novelGene_8834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32531498	32531322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_32531300_32531500
PB_novel_23214_0	chr2	+	164	1	Intergenic	novelGene_8835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATCTTAAAAAAAAAAA	743	False	NA	NA	False	NA	NA	NA	32588375	32588539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_32588400_32588500
PB_novel_23215_0	chr2	-	170	1	Intergenic	novelGene_8837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAATCTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32617023	32616853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_32616900_32617000
PB_novel_23216_0	chr2	-	175	1	Intergenic	novelGene_8836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCGTTTTGAAACA	NA	False	NA	NA	False	NA	NA	NA	32606322	32606147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_32606100_32606300
PB_novel_23217_0	chr2	+	193	1	Intergenic	novelGene_8838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAACCTAGGAAAGAAAAAA	408	False	NA	NA	False	NA	NA	NA	32628848	32629041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_32628800_32629000
PB_novel_23219_0	chr2	+	175	1	Intergenic	novelGene_8839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATACACATGCA	NA	False	NA	NA	False	NA	NA	NA	32697206	32697381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_32697200_32697400
PB_novel_23220_0	chr2	-	169	1	Intergenic	novelGene_8840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	32727572	32727403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_32727400_32727600
PB_novel_23221_0	chr2	-	169	1	Intergenic	novelGene_8843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	2399	False	NA	NA	False	NA	NA	NA	32873645	32873476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_32873500_32873600
PB_novel_23224_0	chr2	-	164	1	Intergenic	novelGene_8841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	32745234	32745070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_32745100_32745200
PB_novel_23228_0	chr2	-	169	1	Intergenic	novelGene_8842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	2515	False	NA	NA	False	NA	NA	NA	32826892	32826723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_32826700_32826900
PB_novel_23235_0	chr2	-	174	1	Intergenic	novelGene_8844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAGAATAAAAACT	NA	False	NA	NA	False	NA	NA	NA	32886485	32886311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_32886300_32886500
PB_novel_23237_0	chr2	-	2598	1	Genic_Genomic	ENSMUSG00000038860.16	novel	NA	NA	NA	NA	-2427	-7715	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32919633	32917035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_32917000_32919600
PB_novel_23248_0	chr2	+	174	1	Intergenic	novelGene_8845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	33282449	33282623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_33282400_33282600
PB_novel_23250_0	chr2	+	174	1	Intergenic	novelGene_8846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	33295533	33295707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_33295500_33295700
PB_novel_23256_0	chr2	+	2526	1	Intergenic	novelGene_8847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33346362	33348888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_33346400_33348900
PB_novel_23257_0	chr2	+	131	1	Intergenic	novelGene_8848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAACCGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33369857	33369988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_33369900_33370000
PB_novel_23258_0	chr2	-	182	1	Intergenic	novelGene_8849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	33398836	33398654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_33398700_33398800
PB_novel_23259_0	chr2	-	184	1	Intergenic	novelGene_8850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAATATATTAAAAAAAAAAA	3849	False	NA	NA	False	NA	NA	NA	33435794	33435610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_33435600_33435800
PB_novel_23261_0	chr2	+	176	1	Intergenic	novelGene_8851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	33479716	33479892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_33479700_33479900
PB_novel_23265_0	chr2	+	177	1	Intergenic	novelGene_8852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATAAGAGGGG	NA	False	NA	NA	False	NA	NA	NA	33631956	33632133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_33632000_33632100
PB_novel_23268_0	chr2	+	2874	1	Intergenic	novelGene_8853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33771360	33774234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_33771400_33774200
PB_novel_23269_0	chr2	+	164	1	Intergenic	novelGene_8854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAATAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	33822239	33822403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_33822200_33822400
PB_novel_23270_0	chr2	-	174	1	Intergenic	novelGene_8855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	33876186	33876012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_33876000_33876200
PB_novel_23273_0	chr2	-	174	1	Intergenic	novelGene_8856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACTTTAAA	NA	False	NA	NA	False	NA	NA	NA	34079408	34079234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_34079200_34079400
PB_novel_23276_0	chr2	-	180	1	Intergenic	novelGene_8857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34155869	34155689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_34155700_34155900
PB_novel_23279_0	chr2	-	3645	1	Intergenic	novelGene_8858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	5030	False	NA	NA	False	AAAACA	-26	NA	34250441	34246796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_34246800_34250400
PB_novel_23280_0	chr2	-	177	1	Intergenic	novelGene_8859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6031	False	NA	NA	False	NA	NA	NA	34272287	34272110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_34272100_34272300
PB_novel_23281_0	chr2	+	158	1	Intergenic	novelGene_8860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAACTCTAA	NA	False	NA	NA	False	NA	NA	NA	34290195	34290353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_34290200_34290400
PB_novel_23287_0	chr2	-	176	1	Intergenic	novelGene_8861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAATCTAG	9938	False	NA	NA	False	NA	NA	NA	34362208	34362032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_34362000_34362200
PB_novel_23291_0	chr2	+	168	1	Intergenic	novelGene_8862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAGCAA	NA	False	NA	NA	False	NA	NA	NA	34483332	34483500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_34483300_34483500
PB_novel_23297_0	chr2	+	726	1	Intergenic	novelGene_8863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAATAAATATTTTA	NA	False	NA	NA	False	NA	NA	NA	34581491	34582217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_34581500_34582200
PB_novel_23298_0	chr2	-	174	1	Intergenic	novelGene_8864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATGTAGGTAAAGT	NA	False	NA	NA	False	NA	NA	NA	34597514	34597340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_34597300_34597500
PB_novel_23303_0	chr2	+	177	1	Intergenic	novelGene_8865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAACGT	5275	False	NA	NA	False	NA	NA	NA	34613790	34613967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_34613800_34614000
PB_novel_23304_0	chr2	+	167	1	Intergenic	novelGene_8866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34634169	34634336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_34634200_34634300
PB_novel_23305_1	chr2	+	176	1	Intergenic	novelGene_8868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAACTC	NA	False	NA	NA	False	NA	NA	NA	34639139	34639315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_34639100_34639300
PB_novel_23306_0	chr2	+	183	1	Intergenic	novelGene_8867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34634745	34634928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_34634700_34634900
PB_novel_23307_0	chr2	+	143	1	Intergenic	novelGene_8869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	34656971	34657114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_34657000_34657100
PB_novel_23312_0	chr2	+	176	1	Intergenic	novelGene_8870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGTAGAGG	NA	False	NA	NA	False	NA	NA	NA	34682331	34682507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_34682300_34682500
PB_novel_23313_0	chr2	-	167	1	Intergenic	novelGene_8871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	9600	False	NA	NA	False	NA	NA	NA	34682961	34682794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_34682800_34683000
PB_novel_23314_0	chr2	-	170	1	Intergenic	novelGene_8872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	1221	False	NA	NA	False	NA	NA	NA	34691340	34691170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_34691200_34691300
PB_novel_23315_0	chr2	-	179	1	Intergenic	novelGene_8873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAAAAAAGAAGAA	692	False	NA	-40	True	NA	NA	NA	34691869	34691690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_34691700_34691900
PB_novel_23317_0	chr2	+	5312	1	Antisense	novelGene_ENSMUSG00000035949.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATGCAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-28	NA	34692370	34697682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_34692400_34697700
PB_novel_23320_0	chr2	+	184	1	Intergenic	novelGene_8874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAGAAATAAACTGCAAAAC	NA	False	NA	NA	False	NA	NA	NA	34708866	34709050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_34708900_34709000
PB_novel_23321_0	chr2	-	177	1	Intergenic	novelGene_8875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34710691	34710514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_34710500_34710700
PB_novel_23337_0	chr2	+	2325	1	Intergenic	novelGene_8876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	5433	False	NA	NA	False	NA	NA	NA	35346995	35349320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_35347000_35349300
PB_novel_23340_0	chr2	-	167	1	Intergenic	novelGene_8877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	721	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATC	NA	False	NA	NA	False	NA	NA	NA	35377796	35377629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_35377600_35377800
PB_novel_23343_0	chr2	+	177	1	Intergenic	novelGene_8878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35520941	35521118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_35520900_35521100
PB_novel_23350_0	chr2	+	3426	1	Antisense	novelGene_ENSMUSG00000075376.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	37261254	37264680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_37261300_37264700
PB_novel_23352_0	chr2	-	172	1	Intergenic	novelGene_8879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	37296468	37296296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_37296300_37296500
PB_novel_23353_0	chr2	-	170	1	Intergenic	novelGene_8880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAACCTA	NA	False	NA	NA	False	NA	NA	NA	37315154	37314984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_37315000_37315200
PB_novel_23355_0	chr2	+	173	1	Intergenic	novelGene_8881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	356	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAAAATCTTGACTGC	NA	False	NA	NA	False	NA	NA	NA	37356826	37356999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_37356800_37357000
PB_novel_23356_0	chr2	-	175	1	Intergenic	novelGene_8882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	6113	False	NA	NA	False	NA	NA	NA	37361627	37361452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_37361500_37361600
PB_novel_23361_0	chr2	+	1882	1	Intergenic	novelGene_8883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37480860	37482742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_37480900_37482700
PB_novel_23366_0	chr2	-	185	1	Intergenic	novelGene_8884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGATTAAAGAATCAA	NA	False	NA	NA	False	NA	NA	NA	37560644	37560459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_37560500_37560600
PB_novel_23368_0	chr2	-	175	1	FSM	ENSMUSG00000092958.3	ENSMUST00000175217.3	84	1	57	-148	57	148	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGTGCA	7641	False	NA	NA	False	NA	NA	NA	37578239	37578064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_37578100_37578200
PB_novel_23372_1	chr2	+	180	1	Intergenic	novelGene_8885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	37628161	37628341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_37628200_37628300
PB_novel_23373_0	chr2	-	188	1	Intergenic	novelGene_8886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	37662509	37662321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_37662300_37662500
PB_novel_23375_0	chr2	-	3051	1	Intergenic	novelGene_8887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACCCCCTCCCAAAAAAA	5311	False	NA	NA	False	NA	NA	NA	37698554	37695503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_37695500_37698600
PB_novel_23378_0	chr2	+	118	1	Intergenic	novelGene_8888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	37810966	37811084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_37811000_37811100
PB_novel_23381_0	chr2	+	169	1	Intergenic	novelGene_8889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37826885	37827054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_37826900_37827100
PB_novel_23382_0	chr2	+	3900	1	Intergenic	novelGene_8890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-9	NA	37964487	37968387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_37964500_37968400
PB_novel_23389_0	chr2	-	176	1	Intergenic	novelGene_8891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAAGAAACAA	NA	False	NA	NA	False	NA	NA	NA	38343491	38343315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_38343300_38343500
PB_novel_23391_1	chr2	-	176	1	Intergenic	novelGene_8892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTGTATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	38387491	38387315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_38387300_38387500
PB_novel_23396_0	chr2	-	177	1	Intergenic	novelGene_8893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATAGAAAATG	NA	False	NA	NA	False	NA	NA	NA	38678632	38678455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_38678500_38678600
PB_novel_23397_0	chr2	+	173	1	Intergenic	novelGene_8894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	38740401	38740574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_38740400_38740600
PB_novel_23400_0	chr2	+	175	1	Intergenic	novelGene_8895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	38758048	38758223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_38758000_38758200
PB_novel_23408_0	chr2	-	173	1	Antisense	novelGene_ENSMUSG00000026755.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	436	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38900282	38900109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_38900100_38900300
PB_novel_23412_0	chr2	-	178	1	Intergenic	novelGene_8896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	38966948	38966770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_38966800_38966900
PB_novel_23413_0	chr2	-	177	1	Intergenic	novelGene_8897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAAAGCATTAA	NA	False	NA	NA	False	NA	NA	NA	38987823	38987646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_38987600_38987800
PB_novel_23421_0	chr2	-	408	1	Intergenic	novelGene_8898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40413049	40412641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_40412600_40413000
PB_novel_23423_0	chr2	+	104	1	Intergenic	novelGene_8899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATGAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-9	NA	40447331	40447435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_40447300_40447400
PB_novel_23428_0	chr2	+	171	1	Intergenic	novelGene_8900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41391577	41391748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_41391600_41391700
PB_novel_23431_0	chr2	+	172	1	Intergenic	novelGene_8901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	41662856	41663028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_41662900_41663000
PB_novel_23441_0	chr2	-	165	1	Intergenic	novelGene_8902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	44457410	44457245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_44457200_44457400
PB_novel_23444_0	chr2	-	183	1	Intergenic	novelGene_8903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44718511	44718328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_44718300_44718500
PB_novel_23447_0	chr2	+	218	1	Intergenic	novelGene_8904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGACTATA	NA	False	NA	NA	False	AATAAA	-26	NA	45026132	45026350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_45026100_45026400
PB_novel_23454_0	chr2	+	182	1	Intergenic	novelGene_8905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAGGAATAG	NA	False	NA	NA	False	NA	NA	NA	46225340	46225522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_46225300_46225500
PB_novel_23458_0	chr2	-	176	1	Intergenic	novelGene_8906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAGTAACATTTTCA	NA	False	NA	NA	False	NA	NA	NA	48729597	48729421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_48729400_48729600
PB_novel_23460_0	chr2	+	174	1	Intergenic	novelGene_8907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48812010	48812184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_48812000_48812200
PB_novel_23462_0	chr2	+	9254	1	Intergenic	novelGene_8908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48844492	48853746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_48844500_48853700
PB_novel_23478_0	chr2	-	177	1	Intergenic	novelGene_8909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	49900112	49899935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_49899900_49900100
PB_novel_23479_0	chr2	-	177	1	Intergenic	novelGene_8910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49907653	49907476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_49907500_49907700
PB_novel_23487_0	chr2	+	157	1	Intergenic	novelGene_8911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	51951178	51951335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_51951200_51951300
PB_novel_23494_0	chr2	-	176	1	Genic_Genomic	ENSMUSG00000026950.19	novel	NA	NA	NA	NA	-140	2044	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATTTAATAA	NA	False	NA	NA	False	NA	NA	NA	52066189	52066013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_52066000_52066200
PB_novel_23506_0	chr2	-	174	1	Intergenic	novelGene_8912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAACTA	NA	False	NA	NA	False	NA	NA	NA	52872257	52872083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_52872100_52872300
PB_novel_23520_0	chr2	-	2485	1	FSM	ENSMUSG00000083287.5	ENSMUST00000121574.2	684	1	-52	-1749	-52	1749	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATATTGAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	53586868	53584383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_53584400_53586900
PB_novel_23523_0	chr2	+	176	1	Intergenic	novelGene_8913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATCTCAAACATGA	NA	False	NA	NA	False	NA	NA	NA	53860480	53860656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_53860500_53860700
PB_novel_23531_0	chr2	+	175	1	Intergenic	novelGene_8914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAGATTTATTGTA	NA	False	NA	NA	False	NA	NA	NA	56971873	56972048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_56971900_56972000
PB_novel_23537_0	chr2	-	169	1	Intergenic	novelGene_8915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAACTCTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	57164083	57163914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_57163900_57164100
PB_novel_23546_0	chr2	-	175	1	Intergenic	novelGene_8916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAACAATAG	NA	False	NA	NA	False	NA	NA	NA	58514253	58514078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_58514100_58514300
PB_novel_23549_0	chr2	-	5123	1	Intergenic	novelGene_8917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58997711	58992588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_58992600_58997700
PB_novel_23561_0	chr2	+	176	1	Intergenic	novelGene_8918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	59414963	59415139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_59415000_59415100
PB_novel_23563_0	chr2	+	157	1	Intergenic	novelGene_8919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	59440569	59440726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_59440600_59440700
PB_novel_23567_1	chr2	+	176	1	Intergenic	novelGene_8920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	59571192	59571368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_59571200_59571400
PB_novel_23570_0	chr2	+	172	1	Intergenic	novelGene_8921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	59682203	59682375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_59682200_59682400
PB_novel_23572_0	chr2	-	176	1	Intergenic	novelGene_8922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAATTAC	NA	False	NA	NA	False	NA	NA	NA	59777447	59777271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_59777300_59777400
PB_novel_23573_0	chr2	+	165	1	Intergenic	novelGene_8923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	1263	False	NA	NA	False	NA	NA	NA	59813290	59813455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_59813300_59813500
PB_novel_23574_0	chr2	-	173	1	Intergenic	novelGene_8924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGAATATAC	NA	False	NA	NA	False	NA	NA	NA	59847579	59847406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_59847400_59847600
PB_novel_23575_1	chr2	-	175	1	Intergenic	novelGene_8926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	3297	False	NA	NA	False	NA	NA	NA	60007268	60007093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_60007100_60007300
PB_novel_23580_0	chr2	-	3523	1	NIC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	-18	-45258	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACTACCAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	59955954	59952431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_59952400_59956000
PB_novel_23585_0	chr2	-	157	1	Intergenic	novelGene_8925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATTAAAA	8789	False	NA	NA	False	NA	NA	NA	59995948	59995791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_59995800_59995900
PB_novel_23586_0	chr2	+	173	1	Intergenic	novelGene_8927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTTTAAAATACAGATGA	NA	False	NA	NA	False	NA	NA	NA	60009075	60009248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_60009100_60009200
PB_novel_23590_0	chr2	+	2784	1	Intergenic	novelGene_8928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60040580	60043364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_60040600_60043400
PB_novel_23593_0	chr2	-	177	1	Intergenic	novelGene_8929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAATAT	NA	False	NA	NA	False	NA	NA	NA	60084503	60084326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_60084300_60084500
PB_novel_23596_0	chr2	+	174	1	Intergenic	novelGene_8930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGGCTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	60142634	60142808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_60142600_60142800
PB_novel_23600_0	chr2	+	178	1	Intergenic	novelGene_8931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	547	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	60325243	60325421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_60325200_60325400
PB_novel_23601_0	chr2	+	160	1	Intergenic	novelGene_8932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATCCTTTTTAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	60500907	60501067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_60500900_60501100
PB_novel_23603_0	chr2	+	285	1	Intergenic	novelGene_8933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60665511	60665796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_60665500_60665800
PB_novel_23604_0	chr2	-	5444	1	NIC	ENSMUSG00000026970.17	novel	2543	15	NA	NA	65	12282	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGTAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	60711717	60706273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_60706300_60711700
PB_novel_23610_0	chr2	-	177	1	Intergenic	novelGene_8934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61838849	61838672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_61838700_61838800
PB_novel_23613_0	chr2	+	208	1	Intergenic	novelGene_8935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATTAACA	NA	False	NA	NA	False	NA	NA	NA	62188540	62188748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_62188500_62188700
PB_novel_23617_1	chr2	+	177	1	Intergenic	novelGene_8936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	336	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62877603	62877780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_62877600_62877800
PB_novel_23622_1	chr2	+	180	1	Intergenic	novelGene_8937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65150284	65150464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_65150300_65150500
PB_novel_23630_0	chr2	-	176	1	Intergenic	novelGene_8938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	65673849	65673673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_65673700_65673800
PB_novel_23640_0	chr2	-	180	1	Intergenic	novelGene_8939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAGAGAAATAAAAG	NA	False	NA	NA	False	NA	NA	NA	66620947	66620767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_66620800_66620900
PB_novel_23641_0	chr2	-	168	1	Intergenic	novelGene_8940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	66988551	66988383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_66988400_66988600
PB_novel_23643_0	chr2	-	191	1	Intergenic	novelGene_8941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAGAAAAAAAAAAAAAA	8001	False	NA	NA	False	NA	NA	NA	68225036	68224845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_68224800_68225000
PB_novel_23653_0	chr2	+	425	1	Intergenic	novelGene_8942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAACTAAAAAAAAAAAA	3278	False	NA	NA	False	NA	NA	NA	69026278	69026703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_69026300_69026700
PB_novel_23654_0	chr2	-	3999	1	NIC	ENSMUSG00000005233.17	novel	1527	7	NA	NA	409	-800	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69035065	69031066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_69031100_69035100
PB_novel_23656_0	chr2	-	174	1	Intergenic	novelGene_8943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAATATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69038583	69038409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_69038400_69038600
PB_novel_23661_0	chr2	+	188	1	Intergenic	novelGene_8944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	4025	False	NA	NA	False	NA	NA	NA	69398519	69398707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_69398500_69398700
PB_novel_23662_0	chr2	+	176	1	Intergenic	novelGene_8945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAATGCTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69431530	69431706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_69431500_69431700
PB_novel_23670_0	chr2	+	178	1	Intergenic	novelGene_8946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTAAAAAGAAGAGAAGG	NA	False	NA	NA	False	NA	NA	NA	69518674	69518852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_69518700_69518900
PB_novel_23671_0	chr2	+	1057	1	Intergenic	novelGene_8947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69522260	69523317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_69522300_69523300
PB_novel_23676_0	chr2	-	2051	1	FSM	ENSMUSG00000082345.2	ENSMUST00000120658.2	433	1	-1592	-26	-1592	26	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACTCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-8	NA	69569725	69567674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_69567700_69569700
PB_novel_23678_0	chr2	+	170	1	Intergenic	novelGene_8948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACCATT	NA	False	NA	NA	False	NA	NA	NA	69573057	69573227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_69573100_69573200
PB_novel_23680_0	chr2	+	175	1	Intergenic	novelGene_8949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAAAGAACTCAA	NA	False	NA	NA	False	NA	NA	NA	69657379	69657554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_69657400_69657600
PB_novel_23681_0	chr2	-	148	1	Intergenic	novelGene_8950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTAATAAATAAATAAATATT	NA	False	NA	NA	False	NA	NA	NA	69659980	69659832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_69659800_69660000
PB_novel_23682_0	chr2	+	175	1	Intergenic	novelGene_8951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAGAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	69667469	69667644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_69667500_69667600
PB_novel_23683_0	chr2	+	176	1	Intergenic	novelGene_8952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAACAAGAA	NA	False	NA	NA	False	NA	NA	NA	69668794	69668970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_69668800_69669000
PB_novel_23688_0	chr2	-	177	1	Intergenic	novelGene_8953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTAAAAAAAAAAAAACTGGA	1448	False	NA	NA	False	NA	NA	NA	69712058	69711881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_69711900_69712100
PB_novel_23689_0	chr2	-	176	1	Intergenic	novelGene_8954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69738201	69738025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_69738000_69738200
PB_novel_23691_0	chr2	-	174	2	Antisense	novelGene_ENSMUSG00000044308.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATCTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	69752152	69745553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_69745569_69751993
PB_novel_23691_3	chr2	-	177	1	Intergenic	novelGene_8956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69752152	69751975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_69752000_69752200
PB_novel_23693_0	chr2	-	169	1	Intergenic	novelGene_8955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAAAAAAATCTGT	NA	False	NA	NA	False	NA	NA	NA	69745726	69745557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_69745600_69745700
PB_novel_23694_0	chr2	+	184	1	Intergenic	novelGene_8957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATTTAAAAAAAAA	6678	False	NA	NA	False	NA	NA	NA	69757198	69757382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_69757200_69757400
PB_novel_23695_0	chr2	-	482	1	Intergenic	novelGene_8958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69760924	69760442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_69760400_69760900
PB_novel_23697_1	chr2	-	172	1	Intergenic	novelGene_8960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69874040	69873868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_69873900_69874000
PB_novel_23698_0	chr2	-	175	1	Intergenic	novelGene_8959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAGAAAAAAAAAAGTAAG	7119	False	NA	NA	False	NA	NA	NA	69792568	69792393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_69792400_69792600
PB_novel_23702_0	chr2	+	222	1	Intergenic	novelGene_8961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAACAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70244127	70244349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_70244100_70244300
PB_novel_23708_0	chr2	+	175	1	Intergenic	novelGene_8962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAAAGAAACCTTAA	3463	False	NA	NA	False	NA	NA	NA	70462413	70462588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_70462400_70462600
PB_novel_23713_0	chr2	-	177	1	Intergenic	novelGene_8963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	70554969	70554792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_70554800_70555000
PB_novel_23715_0	chr2	+	180	1	Intergenic	novelGene_8964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATAAATAAATAAGAAAGA	7790	False	NA	NA	False	NA	NA	NA	70609532	70609712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_70609500_70609700
PB_novel_23717_0	chr2	+	178	1	Intergenic	novelGene_8965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	70638291	70638469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_70638300_70638500
PB_novel_23718_0	chr2	+	1015	1	Intergenic	novelGene_8966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70654019	70655034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_70654000_70655000
PB_novel_23722_0	chr2	+	2446	1	Intergenic	novelGene_8967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACACAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70872874	70875320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_70872900_70875300
PB_novel_23727_0	chr2	+	163	1	Intergenic	novelGene_8968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATAGC	NA	False	NA	NA	False	NA	NA	NA	70997934	70998097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_70997900_70998100
PB_novel_23735_0	chr2	+	2869	1	Antisense	novelGene_ENSMUSG00000027010.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACTAAAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	71140821	71143690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_71140800_71143700
PB_novel_23736_0	chr2	+	174	1	Intergenic	novelGene_8969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAGAAAGAAACTA	NA	False	NA	NA	False	NA	NA	NA	71156640	71156814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_71156600_71156800
PB_novel_23741_0	chr2	+	172	1	Intergenic	novelGene_8970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTTAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	71194222	71194394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_71194200_71194400
PB_novel_23742_0	chr2	+	176	1	Intergenic	novelGene_8971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAATGATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	71202762	71202938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_71202800_71202900
PB_novel_23743_0	chr2	+	180	1	Intergenic	novelGene_8972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAATGATA	2029	False	NA	NA	False	NA	NA	NA	71216514	71216694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_71216500_71216700
PB_novel_23747_0	chr2	-	177	1	Intergenic	novelGene_8973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATAAGT	NA	False	NA	NA	False	NA	NA	NA	71231080	71230903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_71230900_71231100
PB_novel_23749_0	chr2	+	1826	1	Intergenic	novelGene_8974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACATG	NA	False	NA	NA	False	NA	NA	NA	71252844	71254670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_71252800_71254700
PB_novel_23754_0	chr2	+	193	1	Intergenic	novelGene_8975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	71317776	71317969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_71317800_71318000
PB_novel_23763_0	chr2	+	2515	1	Genic_Genomic	ENSMUSG00000086641.2	novel	NA	NA	NA	NA	-1084	-1223	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71576766	71579281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_71576800_71579300
PB_novel_23765_0	chr2	-	180	1	Intergenic	novelGene_8976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTAAAAAATAAAATG	NA	False	NA	NA	False	NA	NA	NA	71629491	71629311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_71629300_71629500
PB_novel_23769_0	chr2	-	1912	1	Antisense	novelGene_ENSMUSG00000006494.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71726126	71724214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_71724200_71726100
PB_novel_23771_0	chr2	+	164	1	Intergenic	novelGene_8977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAGAAAAAA	9724	False	NA	NA	False	NA	NA	NA	71755566	71755730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_71755600_71755700
PB_novel_23778_0	chr2	-	176	1	Intergenic	novelGene_8978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGTTA	NA	False	NA	NA	False	NA	NA	NA	72285220	72285044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_72285000_72285200
PB_novel_23781_0	chr2	+	170	1	Intergenic	novelGene_8979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAAATTAATTT	NA	False	NA	NA	False	NA	NA	NA	72495797	72495967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_72495800_72496000
PB_novel_23786_0	chr2	-	155	1	Intergenic	novelGene_8980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCATACATATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	72529464	72529309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_72529300_72529500
PB_novel_23791_0	chr2	-	163	1	Intergenic	novelGene_8981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAGAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	72825216	72825053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_72825100_72825200
PB_novel_23795_0	chr2	-	170	1	Intergenic	novelGene_8982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	72857099	72856929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_72856900_72857100
PB_novel_23797_0	chr2	-	168	1	Intergenic	novelGene_8983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATTGTG	7596	False	NA	NA	False	NA	NA	NA	72879017	72878849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_72878800_72879000
PB_novel_23800_0	chr2	+	175	1	Intergenic	novelGene_8984	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	72924610	72924785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_72924600_72924800
PB_novel_23803_0	chr2	-	154	1	Intergenic	novelGene_8985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73087470	73087316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_73087300_73087500
PB_novel_23805_0	chr2	+	2455	1	NIC	ENSMUSG00000008226.15	novel	3309	8	NA	NA	0	-688	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73143002	73145457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_73143000_73145500
PB_novel_23820_0	chr2	-	176	1	Intergenic	novelGene_8986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAATAAGACTT	227	False	NA	NA	False	NA	NA	NA	73625510	73625334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_73625300_73625500
PB_novel_23823_1	chr2	+	2565	1	Intergenic	novelGene_8987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73653897	73656462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_73653900_73656500
PB_novel_23824_1	chr2	+	184	1	Intergenic	novelGene_8988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAACAAAGA	NA	False	NA	NA	False	NA	NA	NA	73668453	73668637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_73668500_73668600
PB_novel_23828_0	chr2	-	174	1	Intergenic	novelGene_8989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAGAATTAATGA	NA	False	NA	NA	False	NA	NA	NA	73732802	73732628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_73732600_73732800
PB_novel_23830_0	chr2	-	167	1	Intergenic	novelGene_8990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATCTTACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	73744844	73744677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_73744700_73744800
PB_novel_23834_0	chr2	-	167	1	Intergenic	novelGene_8991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	74069608	74069441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_74069400_74069600
PB_novel_23840_0	chr2	-	176	1	Intergenic	novelGene_8992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74616736	74616560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_74616600_74616700
PB_novel_23850_0	chr2	-	141	1	Intergenic	novelGene_8993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75447353	75447212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_75447200_75447400
PB_novel_23851_0	chr2	-	178	1	Intergenic	novelGene_8994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAACCTAG	2436	False	NA	NA	False	NA	NA	NA	75465382	75465204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_75465200_75465400
PB_novel_23857_0	chr2	+	130	1	Intergenic	novelGene_8995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAACAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75467482	75467612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_75467500_75467600
PB_novel_23861_0	chr2	-	175	1	Intergenic	novelGene_8996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATAAGGCC	NA	False	NA	NA	False	NA	NA	NA	75508661	75508486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_75508500_75508700
PB_novel_23866_1	chr2	+	209	1	Intergenic	novelGene_8998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAGA	7986	False	NA	NA	False	NA	NA	NA	75691191	75691400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_75691200_75691400
PB_novel_23873_0	chr2	-	157	1	Intergenic	novelGene_8997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAACAAAATTTTTTT	6991	False	NA	NA	False	NA	NA	NA	75678522	75678365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_75678400_75678500
PB_novel_23877_0	chr2	+	2707	1	Intergenic	novelGene_8999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAGAAAAAAAA	3589	False	NA	NA	False	NA	NA	NA	75718635	75721342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_75718600_75721300
PB_novel_23886_0	chr2	-	175	1	Intergenic	novelGene_9000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	76421243	76421068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_76421100_76421200
PB_novel_23897_0	chr2	-	177	1	Intergenic	novelGene_9001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGAGGGC	6554	False	NA	NA	False	NA	NA	NA	76931854	76931677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_76931700_76931900
PB_novel_23920_0	chr2	+	179	1	Intergenic	novelGene_9002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80352414	80352593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_80352400_80352600
PB_novel_23921_0	chr2	+	179	1	Intergenic	novelGene_9003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	80355382	80355561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_80355400_80355600
PB_novel_23930_0	chr2	+	203	1	Intergenic	novelGene_9004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTACAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80482353	80482556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_80482400_80482600
PB_novel_23937_0	chr2	-	123	1	FSM	ENSMUSG00000081400.2	ENSMUST00000119790.2	793	1	746	-76	746	76	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGGTGAAGCAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-5	NA	83183547	83183424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_83183400_83183500
PB_novel_23945_0	chr2	-	139	1	Intergenic	novelGene_9005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	83544297	83544158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_83544200_83544300
PB_novel_23946_1	chr2	-	176	1	Intergenic	novelGene_9006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAATAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	83546464	83546288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_83546300_83546500
PB_novel_23959_0	chr2	-	153	1	Intergenic	novelGene_9007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCATAAAATAAATCTATAT	8020	False	NA	NA	False	NA	NA	NA	84382782	84382629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_84382600_84382800
PB_novel_23960_0	chr2	+	156	1	Intergenic	novelGene_9008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	84407741	84407897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_84407700_84407900
PB_novel_23965_0	chr2	+	175	1	Intergenic	novelGene_9009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAATAAAAATAT	NA	False	NA	NA	False	NA	NA	NA	84482970	84483145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_84483000_84483100
PB_novel_23967_0	chr2	-	165	1	Intergenic	novelGene_9010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAAAAAACAACT	3130	False	NA	NA	False	NA	NA	NA	84510561	84510396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_84510400_84510600
PB_novel_23974_0	chr2	+	3905	1	Antisense	novelGene_ENSMUSG00000034075.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAGCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84538458	84542363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_84538500_84542400
PB_novel_23976_0	chr2	-	209	1	Intergenic	novelGene_9011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATTTGCTTATTAAAAA	NA	False	NA	NA	False	AAAAAG	-23	NA	84553350	84553141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_84553100_84553400
PB_novel_23978_0	chr2	-	1595	1	Intergenic	novelGene_9012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	84571457	84569862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_84569900_84571500
PB_novel_23981_0	chr2	-	174	1	Intergenic	novelGene_9013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTAAAAGAGAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	84617037	84616863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_84616900_84617000
PB_novel_23986_0	chr2	-	165	1	Intergenic	novelGene_9014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	408	False	NA	NA	False	NA	NA	NA	84678435	84678270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_84678300_84678400
PB_novel_23991_0	chr2	-	172	1	Intergenic	novelGene_9015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACGTTT	NA	False	NA	NA	False	NA	NA	NA	85112012	85111840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_85111800_85112000
PB_novel_23997_0	chr2	-	172	1	Intergenic	novelGene_9016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAGAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	87353262	87353090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_87353100_87353300
PB_novel_23998_0	chr2	-	175	1	FSM	ENSMUSG00000083267.3	ENSMUST00000119555.3	892	1	873	-156	873	156	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	87353844	87353669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_87353700_87353800
PB_novel_24000_1	chr2	+	721	1	FSM	ENSMUSG00000082908.5	ENSMUST00000119272.2	253	1	-113	-355	-113	355	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	87356375	87357096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_87356400_87357100
PB_novel_24000_4	chr2	+	643	2	Genic_Genomic	ENSMUSG00000082908.5	novel	253	1	NA	NA	-102	355	multi-exon	FALSE	canonical	1	11	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	87356386	87357096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_87356560_87356626
PB_novel_24003_0	chr2	+	175	1	Intergenic	novelGene_9017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAAACC	NA	False	NA	NA	False	NA	NA	NA	87371778	87371953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_87371800_87372000
PB_novel_24004_0	chr2	-	161	1	Intergenic	novelGene_9018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	87395914	87395753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_87395800_87395900
PB_novel_24005_0	chr2	+	176	1	Intergenic	novelGene_9019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAATAAAAAGAGAC	NA	False	NA	NA	False	NA	NA	NA	87456543	87456719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_87456500_87456700
PB_novel_24006_0	chr2	+	175	1	Intergenic	novelGene_9020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87551964	87552139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_87552000_87552100
PB_novel_24007_0	chr2	-	178	1	Intergenic	novelGene_9021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATTATAGTAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	87649962	87649784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_87649800_87650000
PB_novel_24010_0	chr2	+	177	1	Intergenic	novelGene_9022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATGAAGATCTCAA	NA	False	NA	NA	False	NA	NA	NA	88836586	88836763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_88836600_88836800
PB_novel_24011_0	chr2	-	179	1	Intergenic	novelGene_9023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	90004068	90003889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_90003900_90004100
PB_novel_24013_0	chr2	+	179	1	Intergenic	novelGene_9024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	90203312	90203491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_90203300_90203500
PB_novel_24016_0	chr2	-	120	1	Intergenic	novelGene_9025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAAAACAAAACAAACA	5035	False	NA	NA	False	NA	NA	NA	90390146	90390026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_90390000_90390100
PB_novel_24021_0	chr2	-	178	1	Intergenic	novelGene_9026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCTAAAATATAAAAGACAG	3158	False	NA	NA	False	NA	NA	NA	90476013	90475835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_90475800_90476000
PB_novel_24023_0	chr2	-	136	1	Intergenic	novelGene_9027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAAATTAAATTAAAT	6643	False	NA	NA	False	NA	NA	NA	90484441	90484305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_90484300_90484400
PB_novel_24025_0	chr2	+	161	1	Intergenic	novelGene_9028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	90512592	90512753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_90512600_90512800
PB_novel_24033_0	chr2	-	176	1	Intergenic	novelGene_9029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAACCCAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	90625467	90625291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_90625300_90625500
PB_novel_24035_2	chr2	-	218	1	Intergenic	novelGene_9034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-12	NA	90794540	90794322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_90794300_90794500
PB_novel_24037_0	chr2	+	158	1	Intergenic	novelGene_9030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	90653015	90653173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_90653000_90653200
PB_novel_24046_0	chr2	-	176	1	Intergenic	novelGene_9031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90730944	90730768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_90730800_90730900
PB_novel_24047_0	chr2	+	149	1	Intergenic	novelGene_9032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATCTTTAAAAAAAAAGAAA	928	False	NA	NA	False	NA	NA	NA	90733676	90733825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_90733700_90733800
PB_novel_24048_0	chr2	+	184	1	Intergenic	novelGene_9033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAACTCAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	90761329	90761513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_90761300_90761500
PB_novel_24052_0	chr2	+	192	1	Intergenic	novelGene_9035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90837592	90837784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_90837600_90837800
PB_novel_24065_0	chr2	+	590	2	Intergenic	novelGene_9036	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	24	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAAGAGTGAGA	NA	False	NA	NA	False	NA	NA	NA	91067483	91068393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_91067747_91068066
PB_novel_24066_0	chr2	+	149	1	Intergenic	novelGene_9037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91067833	91067982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_91067800_91068000
PB_novel_24067_0	chr2	+	176	1	Intergenic	novelGene_9038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAAGAGTGAGA	NA	False	NA	NA	False	NA	NA	NA	91068217	91068393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_91068200_91068400
PB_novel_24069_0	chr2	-	170	1	Intergenic	novelGene_9039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAATAATAATAAATTTT	9361	False	NA	NA	False	NA	NA	NA	91075217	91075047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91075000_91075200
PB_novel_24072_0	chr2	-	150	1	Intergenic	novelGene_9040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATAAATCTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91124471	91124321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91124300_91124500
PB_novel_24073_0	chr2	+	97	1	Intergenic	novelGene_9041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAGAAAAGAA	7752	False	NA	NA	False	NA	NA	NA	91127637	91127734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_91127600_91127700
PB_novel_24074_0	chr2	-	174	1	Intergenic	novelGene_9042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAACCCAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	91128024	91127850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91127800_91128000
PB_novel_24077_0	chr2	-	162	1	Intergenic	novelGene_9043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	649	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAATAAATTAAAAAAAAA	2167	False	NA	NA	False	NA	NA	NA	91200501	91200339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91200300_91200500
PB_novel_24080_0	chr2	+	177	1	Intergenic	novelGene_9044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAATAAGCTCAATTC	NA	False	NA	NA	False	NA	NA	NA	91252882	91253059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_91252900_91253100
PB_novel_24082_0	chr2	-	177	1	Intergenic	novelGene_9045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAGAATAATAAA	6605	False	NA	NA	False	NA	NA	NA	91326623	91326446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91326400_91326600
PB_novel_24091_0	chr2	+	219	1	Intergenic	novelGene_9046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAATAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	91496202	91496421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_91496200_91496400
PB_novel_24094_0	chr2	-	2281	1	NIC	ENSMUSG00000027244.15	novel	3551	16	NA	NA	25	-19558	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91540896	91538615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_91538600_91540900
PB_novel_24096_0	chr2	-	164	1	Intergenic	novelGene_9047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	91561989	91561825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91561800_91562000
PB_novel_24098_0	chr2	-	153	1	Intergenic	novelGene_9048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATAATAATAAATGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	91563768	91563615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91563600_91563800
PB_novel_24099_0	chr2	-	177	1	Intergenic	novelGene_9049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	91564973	91564796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91564800_91565000
PB_novel_24103_0	chr2	-	170	1	Intergenic	novelGene_9050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	5868	False	NA	NA	False	NA	NA	NA	91579117	91578947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91578900_91579100
PB_novel_24104_0	chr2	-	178	1	Intergenic	novelGene_9051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	2097	False	NA	NA	False	NA	NA	NA	91582888	91582710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91582700_91582900
PB_novel_24105_0	chr2	+	177	1	Intergenic	novelGene_9052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTTATTTA	4974	False	NA	NA	False	NA	NA	NA	91591143	91591320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_91591100_91591300
PB_novel_24106_0	chr2	-	170	1	Intergenic	novelGene_9053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATCTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	91592635	91592465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91592500_91592600
PB_novel_24109_0	chr2	-	175	1	Intergenic	novelGene_9054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAGAAAATCAA	NA	False	NA	NA	False	NA	NA	NA	91606618	91606443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91606400_91606600
PB_novel_24113_0	chr2	-	183	1	Intergenic	novelGene_9055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAGAAGATTCCT	3634	False	NA	NA	False	NA	NA	NA	91632826	91632643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91632600_91632800
PB_novel_24114_0	chr2	+	174	1	Intergenic	novelGene_9056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAAATT	NA	False	NA	NA	False	NA	NA	NA	91639389	91639563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_91639400_91639600
PB_novel_24115_0	chr2	-	180	1	Intergenic	novelGene_9057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGGATTCAACAAA	6153	False	NA	NA	False	NA	NA	NA	91643874	91643694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91643700_91643900
PB_novel_24116_0	chr2	-	181	1	Intergenic	novelGene_9058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAACAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91661063	91660882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91660900_91661100
PB_novel_24131_0	chr2	+	181	1	Intergenic	novelGene_9059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4563	False	NA	NA	False	NA	NA	NA	91968437	91968618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_91968400_91968600
PB_novel_24137_0	chr2	-	156	1	Intergenic	novelGene_9060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAATAAAAAAAAAAAAA	8937	False	NA	NA	False	NA	NA	NA	91992961	91992805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_91992800_91993000
PB_novel_24139_0	chr2	-	1774	1	Intergenic	novelGene_9061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCATAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92031591	92029817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_92029800_92031600
PB_novel_24140_1	chr2	-	177	1	Intergenic	novelGene_9062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92037867	92037690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_92037700_92037900
PB_novel_24140_2	chr2	-	176	2	Antisense	novelGene_ENSMUSG00000083951.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	179	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92112196	92037690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_92037819_92112148
PB_novel_24142_0	chr2	-	184	1	Intergenic	novelGene_9063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATCC	NA	False	NA	NA	False	NA	NA	NA	92112197	92112013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_92112000_92112200
PB_novel_24143_0	chr2	+	177	1	Intergenic	novelGene_9064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGCCG	NA	False	NA	NA	False	NA	NA	NA	92141931	92142108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_92141900_92142100
PB_novel_24154_0	chr2	-	160	1	Intergenic	novelGene_9065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	92792558	92792398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_92792400_92792600
PB_novel_24174_0	chr2	-	3227	1	NIC	ENSMUSG00000040174.15	novel	1395	10	NA	NA	1260	-4454	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93834272	93831045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_93831000_93834300
PB_novel_24182_0	chr2	+	177	1	Intergenic	novelGene_9066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATCTAAGTG	NA	False	NA	NA	False	NA	NA	NA	94184638	94184815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_94184600_94184800
PB_novel_24187_0	chr2	+	177	1	Intergenic	novelGene_9067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	95859297	95859474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_95859300_95859500
PB_novel_24189_0	chr2	-	176	1	Intergenic	novelGene_9068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1031	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98848442	98848266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_98848300_98848400
PB_novel_24191_0	chr2	-	175	1	Intergenic	novelGene_9069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAGTTAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	99055735	99055560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_99055600_99055700
PB_novel_24193_0	chr2	+	157	1	Intergenic	novelGene_9070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	99828848	99829005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_99828800_99829000
PB_novel_24194_0	chr2	+	177	1	Intergenic	novelGene_9071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	99855520	99855697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_99855500_99855700
PB_novel_24196_1	chr2	-	6413	1	Intergenic	novelGene_9072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100377224	100370811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_100370800_100377200
PB_novel_24199_0	chr2	-	269	1	Intergenic	novelGene_9073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATTTTATTAAGAAATA	NA	False	NA	NA	False	AATAAA	-14	NA	101499954	101499685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_101499700_101500000
PB_novel_24202_0	chr2	+	171	1	Intergenic	novelGene_9074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAACAAATAAGATTAAAT	NA	False	NA	NA	False	NA	NA	NA	101643788	101643959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_101643800_101644000
PB_novel_24209_1	chr2	+	177	1	Intergenic	novelGene_9075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102031509	102031686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_102031500_102031700
PB_novel_24210_0	chr2	+	6363	1	Intergenic	novelGene_9076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAGGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102162388	102168751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_102162400_102168800
PB_novel_24214_0	chr2	+	158	1	Intergenic	novelGene_9077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATTTAAA	3641	False	NA	NA	False	NA	NA	NA	102291027	102291185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_102291000_102291200
PB_novel_24221_0	chr2	+	176	1	Intergenic	novelGene_9078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8331	False	NA	NA	False	NA	NA	NA	103447722	103447898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_103447700_103447900
PB_novel_24226_0	chr2	+	178	1	Intergenic	novelGene_9079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5106	False	NA	NA	False	NA	NA	NA	103611540	103611718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_103611500_103611700
PB_novel_24230_0	chr2	+	174	1	Intergenic	novelGene_9080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATAAATCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	103652574	103652748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_103652600_103652700
PB_novel_24233_0	chr2	-	174	1	Intergenic	novelGene_9081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	103663036	103662862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_103662900_103663000
PB_novel_24254_0	chr2	+	167	1	Intergenic	novelGene_9082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	104296229	104296396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_104296200_104296400
PB_novel_24255_0	chr2	-	175	1	Intergenic	novelGene_9083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	104313116	104312941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_104312900_104313100
PB_novel_24276_0	chr2	+	183	1	Intergenic	novelGene_9084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAATGTATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	104704190	104704373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_104704200_104704400
PB_novel_24277_0	chr2	+	165	1	Intergenic	novelGene_9085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	423	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGAGTCATTC	NA	False	NA	NA	False	NA	NA	NA	104717906	104718071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_104717900_104718100
PB_novel_24279_0	chr2	-	221	1	Intergenic	novelGene_9086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAGAATATAAGTT	NA	False	NA	NA	False	NA	NA	NA	104768055	104767834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_104767800_104768100
PB_novel_24282_0	chr2	-	170	1	Intergenic	novelGene_9087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTAAAAAAAAAAAAAGAA	8630	False	NA	NA	False	NA	NA	NA	104808359	104808189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_104808200_104808400
PB_novel_24300_0	chr2	+	2289	1	Antisense	novelGene_ENSMUSG00000027122.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CGAAAAATCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106799428	106801717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_106799400_106801700
PB_novel_24301_0	chr2	-	2316	1	NIC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	18	-4656	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106804724	106802408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_106802400_106804700
PB_novel_24314_0	chr2	-	171	1	Intergenic	novelGene_9088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAGATTGGAGATT	NA	False	NA	NA	False	NA	NA	NA	109203493	109203322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_109203300_109203500
PB_novel_24315_0	chr2	+	159	1	Intergenic	novelGene_9089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAATAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	109591429	109591588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_109591400_109591600
PB_novel_24324_0	chr2	-	176	1	Intergenic	novelGene_9090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109862222	109862046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_109862000_109862200
PB_novel_24325_0	chr2	-	167	1	Intergenic	novelGene_9091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTAAAATATAATAA	NA	False	NA	NA	False	NA	NA	NA	110492632	110492465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_110492500_110492600
PB_novel_24327_0	chr2	-	173	1	Intergenic	novelGene_9092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110663675	110663502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_110663500_110663700
PB_novel_24328_0	chr2	+	170	1	Intergenic	novelGene_9093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	1926	False	NA	NA	False	NA	NA	NA	110733646	110733816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_110733600_110733800
PB_novel_24331_0	chr2	+	187	1	Intergenic	novelGene_9094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTTAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	111927806	111927993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_111927800_111928000
PB_novel_24334_0	chr2	+	175	1	Intergenic	novelGene_9095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATTTA	NA	False	NA	NA	False	NA	NA	NA	112021646	112021821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_112021600_112021800
PB_novel_24335_2	chr2	+	175	1	Intergenic	novelGene_9096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACTATT	NA	False	NA	NA	False	NA	NA	NA	112067616	112067791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_112067600_112067800
PB_novel_24343_0	chr2	-	178	1	Intergenic	novelGene_9097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	112228540	112228362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_112228400_112228500
PB_novel_24346_0	chr2	-	175	1	Intergenic	novelGene_9098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112292650	112292475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_112292500_112292600
PB_novel_24348_0	chr2	-	174	1	Intergenic	novelGene_9099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	112325717	112325543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_112325500_112325700
PB_novel_24360_0	chr2	+	3715	1	Intergenic	novelGene_9100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114390605	114394320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_114390600_114394300
PB_novel_24368_0	chr2	-	1575	1	Intergenic	novelGene_9101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	115532470	115530895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_115530900_115532500
PB_novel_24370_0	chr2	+	2028	1	Intergenic	novelGene_9102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATATAAAAAAAAAAAA	8457	False	NA	NA	False	NA	NA	NA	115590265	115592293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_115590300_115592300
PB_novel_24372_0	chr2	+	3398	1	Intergenic	novelGene_9103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115721636	115725034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_115721600_115725000
PB_novel_24379_0	chr2	+	270	1	Intergenic	novelGene_9104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-23	NA	118002796	118003066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_118002800_118003100
PB_novel_24388_0	chr2	+	177	1	Intergenic	novelGene_9105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAATAAGGTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	118484179	118484356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_118484200_118484400
PB_novel_24391_0	chr2	+	177	1	Intergenic	novelGene_9106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	118584420	118584597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_118584400_118584600
PB_novel_24393_2	chr2	-	7030	1	Genic_Genomic	ENSMUSG00000086421.2	novel	NA	NA	NA	NA	-2934	-153	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	118667537	118660507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_118660500_118667500
PB_novel_24396_0	chr2	+	177	1	Intergenic	novelGene_9107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATAAATAAATTTA	229	False	NA	NA	False	NA	NA	NA	118773002	118773179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_118773000_118773200
PB_novel_24399_0	chr2	-	156	1	Intergenic	novelGene_9108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	118817062	118816906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_118816900_118817100
PB_novel_24400_0	chr2	-	176	1	Intergenic	novelGene_9110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACTG	NA	False	NA	NA	False	NA	NA	NA	119015322	119015146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_119015100_119015300
PB_novel_24422_0	chr2	-	172	1	Intergenic	novelGene_9109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTAAAAAAAAAAACCCA	NA	False	NA	NA	False	NA	NA	NA	118959807	118959635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_118959600_118959800
PB_novel_24430_0	chr2	+	168	1	Intergenic	novelGene_9111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119023170	119023338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_119023200_119023300
PB_novel_24436_0	chr2	+	155	1	Intergenic	novelGene_9112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	119111554	119111709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_119111600_119111700
PB_novel_24441_0	chr2	+	177	1	Intergenic	novelGene_9113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAGATGACACAA	NA	False	NA	NA	False	NA	NA	NA	119224990	119225167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_119225000_119225200
PB_novel_24452_0	chr2	-	1662	1	Intergenic	novelGene_9114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACATTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119311014	119309352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_119309400_119311000
PB_novel_24454_0	chr2	+	184	1	Intergenic	novelGene_9115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	119325154	119325338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_119325200_119325300
PB_novel_24456_0	chr2	+	177	1	Intergenic	novelGene_9116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAAAATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	119339833	119340010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_119339800_119340000
PB_novel_24458_0	chr2	-	169	1	Intergenic	novelGene_9117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	119374692	119374523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_119374500_119374700
PB_novel_24462_0	chr2	+	3200	1	NIC	ENSMUSG00000085438.2	novel	1381	3	NA	NA	27	-3217	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119424810	119428010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119424800_119428000
PB_novel_24466_0	chr2	+	3406	2	NNC	ENSMUSG00000027306.16	novel	312	2	NA	NA	4	-8158	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119449213	119452828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr2_+_119451301_119451509
PB_novel_24467_0	chr2	-	177	1	Intergenic	novelGene_9118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATCAAGTG	8545	False	NA	NA	False	NA	NA	NA	119453700	119453523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_119453500_119453700
PB_novel_24468_0	chr2	+	176	1	Intergenic	novelGene_9119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	119456884	119457060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_119456900_119457100
PB_novel_24472_0	chr2	+	166	1	Intergenic	novelGene_9120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATATTAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	119491460	119491626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_119491500_119491600
PB_novel_24478_0	chr2	-	158	1	Intergenic	novelGene_9121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATAATAAAA	NA	False	NA	NA	False	NA	NA	NA	119626781	119626623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_119626600_119626800
PB_novel_24480_0	chr2	-	175	1	Intergenic	novelGene_9122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAATAT	6013	False	NA	NA	False	NA	NA	NA	119660138	119659963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_119660000_119660100
PB_novel_24490_0	chr2	-	176	1	Intergenic	novelGene_9123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATAGAAAGAAA	3899	False	NA	NA	False	NA	NA	NA	119739283	119739107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_119739100_119739300
PB_novel_24491_0	chr2	+	2531	1	NIC	ENSMUSG00000033943.16	novel	11982	25	NA	NA	-6272	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAGAAAGGAAAA	3535	False	NA	NA	False	NA	NA	NA	119745884	119748415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119745900_119748400
PB_novel_24495_0	chr2	+	3574	1	NIC	ENSMUSG00000033943.16	novel	11982	25	NA	NA	334	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAGAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	119789128	119792702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119789100_119792700
PB_novel_24500_0	chr2	+	173	1	Intergenic	novelGene_9124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAGGAAGC	NA	False	NA	NA	False	NA	NA	NA	119836728	119836901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_119836700_119836900
PB_novel_24501_0	chr2	+	1463	1	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	1	-1410	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCCTGTCTCGAAAAACC	NA	False	NA	NA	False	NA	NA	NA	119857985	119859448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_119858000_119859400
PB_novel_24505_0	chr2	+	230	1	Intergenic	novelGene_9125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAAATAAATCT	NA	False	NA	NA	False	NA	NA	NA	119996515	119996745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_119996500_119996700
PB_novel_24512_0	chr2	-	180	1	Intergenic	novelGene_9126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	120183922	120183742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_120183700_120183900
PB_novel_24513_0	chr2	-	179	1	Intergenic	novelGene_9127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	120209182	120209003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_120209000_120209200
PB_novel_24527_0	chr2	-	177	1	Intergenic	novelGene_9128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120418652	120418475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_120418500_120418700
PB_novel_24529_0	chr2	-	177	1	Intergenic	novelGene_9129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	120459016	120458839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_120458800_120459000
PB_novel_24531_0	chr2	+	177	1	Intergenic	novelGene_9130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120552104	120552281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_120552100_120552300
PB_novel_24541_1	chr2	+	3469	1	Antisense	novelGene_ENSMUSG00000027272.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGAGTAT	9989	False	NA	NA	False	AATAAA	-15	NA	120702990	120706459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_120703000_120706500
PB_novel_24544_0	chr2	+	177	1	Intergenic	novelGene_9131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	120803004	120803181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_120803000_120803200
PB_novel_24555_0	chr2	-	176	1	Intergenic	novelGene_9132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGGACTCTGGA	7137	False	NA	NA	False	NA	NA	NA	121109322	121109146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_121109100_121109300
PB_novel_24560_0	chr2	+	187	1	Intergenic	novelGene_9133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAACAAAACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	121221905	121222092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_121221900_121222100
PB_novel_24563_0	chr2	-	172	1	Intergenic	novelGene_9134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTAAAATAAATAAATAAA	3047	False	NA	NA	False	NA	NA	NA	121238786	121238614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_121238600_121238800
PB_novel_24564_0	chr2	-	152	1	Intergenic	novelGene_9135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAGGAAATCTAG	24	False	NA	NA	False	NA	NA	NA	121241809	121241657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_121241700_121241800
PB_novel_24565_0	chr2	-	1790	1	Intergenic	novelGene_9136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGACAAAAAGAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121246922	121245132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_121245100_121246900
PB_novel_24567_0	chr2	-	176	1	Intergenic	novelGene_9137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGAAAGT	9945	False	NA	NA	False	NA	NA	NA	121303798	121303622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_121303600_121303800
PB_novel_24578_0	chr2	+	175	2	Antisense	novelGene_ENSMUSG00000027238.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACCGTA	2480	False	NA	NA	False	NA	NA	NA	121407626	121438945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_121407750_121438893
PB_novel_24578_1	chr2	+	174	1	Intergenic	novelGene_9138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGATAAAGCAATT	2481	False	NA	NA	False	NA	NA	NA	121407627	121407801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_121407600_121407800
PB_novel_24580_0	chr2	+	176	1	Intergenic	novelGene_9139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACCGTA	844	False	NA	NA	False	NA	NA	NA	121438769	121438945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_121438800_121438900
PB_novel_24585_0	chr2	+	148	1	Intergenic	novelGene_9140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACTTTATA	NA	False	NA	NA	False	NA	NA	NA	121598758	121598906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_121598800_121598900
PB_novel_24590_0	chr2	+	178	1	Intergenic	novelGene_9141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAATTAAACAA	1501	False	NA	NA	False	NA	NA	NA	121720008	121720186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_121720000_121720200
PB_novel_24595_0	chr2	+	177	1	Intergenic	novelGene_9142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAATTGTAAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	121771446	121771623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_121771400_121771600
PB_novel_24602_0	chr2	-	177	1	Intergenic	novelGene_9143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTAG	NA	False	NA	NA	False	NA	NA	NA	121817210	121817033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_121817000_121817200
PB_novel_24603_0	chr2	+	117	1	Intergenic	novelGene_9144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	121828850	121828967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_121828800_121829000
PB_novel_24605_0	chr2	-	290	1	Intergenic	novelGene_9145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATAAATAAATCT	NA	False	NA	NA	False	NA	NA	NA	121840108	121839818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_121839800_121840100
PB_novel_24614_0	chr2	+	174	1	Intergenic	novelGene_9146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGAAAAGACTATC	NA	False	NA	NA	False	NA	NA	NA	121946913	121947087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_121946900_121947100
PB_novel_24618_0	chr2	+	176	1	Intergenic	novelGene_9147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAATAAATGTA	NA	False	NA	NA	False	NA	NA	NA	122012172	122012348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_122012200_122012300
PB_novel_24622_0	chr2	+	177	1	Intergenic	novelGene_9148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	122046087	122046264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_122046100_122046300
PB_novel_24635_0	chr2	-	168	1	Intergenic	novelGene_9149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	124908389	124908221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_124908200_124908400
PB_novel_24638_0	chr2	+	5160	1	NIC	ENSMUSG00000035183.15	novel	1954	9	NA	NA	3158	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124925432	124930592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_124925400_124930600
PB_novel_24644_0	chr2	-	177	1	Intergenic	novelGene_9150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATTAAAAAAAAA	3706	False	NA	NA	False	NA	NA	NA	125084968	125084791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_125084800_125085000
PB_novel_24645_0	chr2	+	3097	1	NIC	ENSMUSG00000027203.16	novel	1020	7	NA	NA	-183	1785	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125089636	125092733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_125089600_125092700
PB_novel_24652_0	chr2	-	172	1	Intergenic	novelGene_9151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6849	False	NA	NA	False	NA	NA	NA	125618245	125618073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_125618100_125618200
PB_novel_24661_0	chr2	+	176	1	Intergenic	novelGene_9152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAACACAATTATG	NA	False	NA	NA	False	NA	NA	NA	126336504	126336680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_126336500_126336700
PB_novel_24663_0	chr2	+	192	1	Intergenic	novelGene_9153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	301	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	126431358	126431550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_126431400_126431600
PB_novel_24665_0	chr2	+	176	1	Intergenic	novelGene_9154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAACTTTTGG	NA	False	NA	NA	False	NA	NA	NA	126463806	126463982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_126463800_126464000
PB_novel_24668_1	chr2	-	173	1	Intergenic	novelGene_9155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	3816	False	NA	NA	False	NA	NA	NA	126496837	126496664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_126496700_126496800
PB_novel_24669_0	chr2	+	1672	1	Intergenic	novelGene_9156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-14	NA	126510925	126512597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_126510900_126512600
PB_novel_24671_0	chr2	-	176	1	Intergenic	novelGene_9157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1297	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	126521091	126520915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_126520900_126521100
PB_novel_24679_2	chr2	+	1130	1	Antisense	novelGene_ENSMUSG00000027365.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAACCTAAA	NA	False	NA	NA	False	NA	NA	NA	126663083	126664213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_126663100_126664200
PB_novel_24679_3	chr2	+	1150	2	Antisense	novelGene_ENSMUSG00000027365.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAACCTAAA	NA	False	NA	NA	False	NA	NA	NA	126661863	126664213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_126661884_126663083
PB_novel_24680_0	chr2	+	177	1	Intergenic	novelGene_9158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGAATGGCTT	NA	False	NA	NA	False	NA	NA	NA	126657237	126657414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_126657200_126657400
PB_novel_24682_0	chr2	-	184	1	Intergenic	novelGene_9159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATGACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-8	NA	126687574	126687390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_126687400_126687600
PB_novel_24689_0	chr2	-	175	1	Intergenic	novelGene_9160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	126799100	126798925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_126798900_126799100
PB_novel_24690_0	chr2	-	171	1	Intergenic	novelGene_9161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAAAAAAGAA	9096	False	NA	NA	False	NA	NA	NA	126801143	126800972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_126801000_126801100
PB_novel_24692_4	chr2	-	176	1	Intergenic	novelGene_9162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAGAA	7849	False	NA	NA	False	NA	NA	NA	126868389	126868213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_126868200_126868400
PB_novel_24697_0	chr2	-	175	1	Intergenic	novelGene_9163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGTTTTTTTAA	6924	False	NA	-21	True	NA	NA	NA	126935066	126934891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_126934900_126935100
PB_novel_24699_1	chr2	+	165	1	Intergenic	novelGene_9164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTTAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	126988021	126988186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_126988000_126988200
PB_novel_24705_0	chr2	-	2052	1	Antisense	novelGene_ENSMUSG00000003660.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127063858	127061806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_127061800_127063900
PB_novel_24708_0	chr2	-	175	1	Intergenic	novelGene_9165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	127114184	127114009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_127114000_127114200
PB_novel_24710_0	chr2	+	167	1	Intergenic	novelGene_9166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAAAAAGAATGGAA	NA	False	NA	NA	False	NA	NA	NA	127128032	127128199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_127128000_127128200
PB_novel_24717_0	chr2	+	175	1	Intergenic	novelGene_9167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127667398	127667573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_127667400_127667600
PB_novel_24724_0	chr2	-	175	1	Intergenic	novelGene_9168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	128138764	128138589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_128138600_128138800
PB_novel_24733_0	chr2	+	2363	1	Antisense	novelGene_ENSMUSG00000014355.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128512317	128514680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_128512300_128514700
PB_novel_24736_0	chr2	-	176	1	Intergenic	novelGene_9169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	128658871	128658695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_128658700_128658900
PB_novel_24738_0	chr2	-	177	1	Intergenic	novelGene_9171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAATGTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128925165	128924988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_128925000_128925200
PB_novel_24742_0	chr2	-	176	1	Intergenic	novelGene_9170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAGAAACC	NA	False	NA	NA	False	NA	NA	NA	128854895	128854719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_128854700_128854900
PB_novel_24749_0	chr2	-	133	1	Intergenic	novelGene_9172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128991618	128991485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_128991500_128991600
PB_novel_24750_0	chr2	-	136	1	Intergenic	novelGene_9173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	129023023	129022887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_129022900_129023000
PB_novel_24768_0	chr2	+	177	1	Intergenic	novelGene_9174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAATAAAAGA	8961	False	NA	NA	False	NA	NA	NA	130286659	130286836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_130286700_130286800
PB_novel_24769_0	chr2	+	169	1	Intergenic	novelGene_9175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130316538	130316707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_130316500_130316700
PB_novel_24776_0	chr2	-	2861	1	NIC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	24	-27358	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	130471923	130469062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_130469100_130471900
PB_novel_24782_0	chr2	-	204	1	Intergenic	novelGene_9176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8752	False	NA	NA	False	NA	NA	NA	130621261	130621057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_130621100_130621300
PB_novel_24786_0	chr2	-	175	1	Intergenic	novelGene_9177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3548	False	NA	NA	False	NA	NA	NA	130664187	130664012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_130664000_130664200
PB_novel_24789_0	chr2	+	175	1	Intergenic	novelGene_9178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130678377	130678552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_130678400_130678600
PB_novel_24793_0	chr2	-	176	1	Intergenic	novelGene_9179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAACAGACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	130789363	130789187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_130789200_130789400
PB_novel_24795_0	chr2	+	176	1	Intergenic	novelGene_9180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	130859455	130859631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_130859500_130859600
PB_novel_24809_0	chr2	+	157	1	Intergenic	novelGene_9181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATCTTAA	NA	False	NA	NA	False	NA	NA	NA	131275254	131275411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_131275300_131275400
PB_novel_24810_1	chr2	-	3418	1	Antisense	novelGene_ENSMUSG00000027333.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	131366871	131363453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_131363500_131366900
PB_novel_24818_0	chr2	-	173	1	Intergenic	novelGene_9182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAGAAACAGG	8931	False	NA	NA	False	NA	NA	NA	131998536	131998363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_131998400_131998500
PB_novel_24820_0	chr2	+	177	1	Intergenic	novelGene_9183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132044175	132044352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_132044200_132044400
PB_novel_24827_0	chr2	-	176	1	Intergenic	novelGene_9184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGGAAAAAAAGAAGAA	9884	False	NA	NA	False	NA	NA	NA	132108637	132108461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_132108500_132108600
PB_novel_24836_0	chr2	+	340	1	Intergenic	novelGene_9185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132525836	132526176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_132525800_132526200
PB_novel_24852_0	chr2	+	178	1	Intergenic	novelGene_9186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	135275062	135275240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_135275100_135275200
PB_novel_24863_0	chr2	+	165	1	Intergenic	novelGene_9187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATAAATAAATAGT	NA	False	NA	NA	False	NA	NA	NA	135953214	135953379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_135953200_135953400
PB_novel_24865_0	chr2	-	174	1	Intergenic	novelGene_9188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGTTA	NA	False	NA	NA	False	NA	NA	NA	136827750	136827576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_136827600_136827800
PB_novel_24871_0	chr2	-	168	1	Intergenic	novelGene_9189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCTTTAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	139629187	139629019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_139629000_139629200
PB_novel_24875_0	chr2	-	4848	1	NIC	ENSMUSG00000039033.12	novel	2480	14	NA	NA	10	-85371	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	139908670	139903822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_139903800_139908700
PB_novel_24878_1	chr2	-	179	1	Intergenic	novelGene_9190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	139961693	139961514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_139961500_139961700
PB_novel_24881_0	chr2	-	176	1	Intergenic	novelGene_9191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	140050149	140049973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_140050000_140050100
PB_novel_24882_0	chr2	-	157	1	Intergenic	novelGene_9192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATAAGTAAATCTTTA	938	False	NA	NA	False	NA	NA	NA	140169610	140169453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_140169500_140169600
PB_novel_24883_0	chr2	+	159	1	Intergenic	novelGene_9193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	140294898	140295057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_140294900_140295100
PB_novel_24888_0	chr2	+	175	1	Intergenic	novelGene_9194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACTATTT	NA	False	NA	NA	False	NA	NA	NA	141412428	141412603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_141412400_141412600
PB_novel_24894_0	chr2	+	174	1	Intergenic	novelGene_9195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TATTAAAAAAAAAAAATAAG	NA	False	NA	NA	False	NA	NA	NA	142697613	142697787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_142697600_142697800
PB_novel_24897_0	chr2	-	176	1	Intergenic	novelGene_9196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAGATAAAAAAG	5315	False	NA	NA	False	NA	NA	NA	142832907	142832731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_142832700_142832900
PB_novel_24899_0	chr2	+	175	1	Intergenic	novelGene_9197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	142955563	142955738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_142955600_142955700
PB_novel_24901_0	chr2	-	160	1	Intergenic	novelGene_9198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAATAAATCTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	143029282	143029122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_143029100_143029300
PB_novel_24904_0	chr2	+	4954	1	NIC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	237	-22814	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATCAAC	NA	False	NA	NA	False	NA	NA	NA	143757476	143762430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_143757500_143762400
PB_novel_24905_0	chr2	-	143	1	Intergenic	novelGene_9199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	143762698	143762555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_143762600_143762700
PB_novel_24913_0	chr2	+	203	1	Intergenic	novelGene_9200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	144071221	144071424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_144071200_144071400
PB_novel_24916_0	chr2	-	3754	1	NIC	ENSMUSG00000027423.16	novel	2512	14	NA	NA	-5	2418	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	144112709	144108955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_144109000_144112700
PB_novel_24918_0	chr2	-	174	1	Intergenic	novelGene_9201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACAAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	144120609	144120435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_144120400_144120600
PB_novel_24920_0	chr2	-	172	1	Intergenic	novelGene_9202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAGAAAAAATT	7089	False	NA	NA	False	NA	NA	NA	144151301	144151129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_144151100_144151300
PB_novel_24926_0	chr2	-	163	1	Intergenic	novelGene_9203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTGAAAAAAAAATCATT	NA	False	NA	NA	False	NA	NA	NA	144310659	144310496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_144310500_144310700
PB_novel_24933_0	chr2	-	172	1	Intergenic	novelGene_9204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	144395577	144395405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_144395400_144395600
PB_novel_24943_0	chr2	+	4606	1	NIC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	-3	-2508	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	145745210	145749816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_145745200_145749800
PB_novel_24944_0	chr2	-	1018	1	Antisense	novelGene_ENSMUSG00000002728.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	145751336	145750318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_145750300_145751300
PB_novel_24960_0	chr2	+	131	1	Intergenic	novelGene_9205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTCAAAAAACCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146734200	146734331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_146734200_146734300
PB_novel_24962_0	chr2	+	176	1	Intergenic	novelGene_9206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATGCA	NA	False	NA	NA	False	NA	NA	NA	146833485	146833661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_146833500_146833700
PB_novel_24963_0	chr2	-	171	1	Intergenic	novelGene_9207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAATAAAGAGATG	NA	False	NA	NA	False	NA	NA	NA	146851561	146851390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_146851400_146851600
PB_novel_24965_0	chr2	-	5029	1	Intergenic	novelGene_9208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146861713	146856684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_146856700_146861700
PB_novel_24971_0	chr2	+	177	1	Intergenic	novelGene_9209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTAAAAAAATATAT	NA	False	NA	NA	False	NA	NA	NA	148490260	148490437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_148490300_148490400
PB_novel_24980_0	chr2	+	3342	1	Intergenic	novelGene_9210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	150039746	150043088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_150039700_150043100
PB_novel_24986_0	chr2	+	3710	1	Intergenic	novelGene_9211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	9163	False	NA	NA	False	NA	NA	NA	150116763	150120473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_150116800_150120500
PB_novel_24989_0	chr2	+	178	1	Intergenic	novelGene_9212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAATATCT	NA	False	NA	NA	False	NA	NA	NA	150136865	150137043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_150136900_150137000
PB_novel_24990_0	chr2	+	176	1	Intergenic	novelGene_9213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAACAACTA	NA	False	NA	NA	False	NA	NA	NA	150138092	150138268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_150138100_150138300
PB_novel_24991_0	chr2	-	145	1	Intergenic	novelGene_9214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACTTATATATAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	150154414	150154269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_150154300_150154400
PB_novel_25005_1	chr2	-	177	1	Intergenic	novelGene_9216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150730772	150730595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_150730600_150730800
PB_novel_25006_0	chr2	-	5181	1	Genic_Genomic	ENSMUSG00000086563.2	novel	NA	NA	NA	NA	-28	2812	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150548824	150543643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_150543600_150548800
PB_novel_25013_0	chr2	-	173	1	Intergenic	novelGene_9215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAGAAAGAACAAA	5785	False	NA	NA	False	NA	NA	NA	150632316	150632143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_150632100_150632300
PB_novel_25016_0	chr2	+	3414	1	Intergenic	novelGene_9217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	150735742	150739156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_150735700_150739200
PB_novel_25021_0	chr2	-	187	1	Intergenic	novelGene_9218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTTTTAAAGAAAAAGAA	8455	False	NA	NA	False	NA	NA	NA	150866619	150866432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_150866400_150866600
PB_novel_25022_0	chr2	+	1462	1	Intergenic	novelGene_9219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-22	NA	150881428	150882890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_150881400_150882900
PB_novel_25027_0	chr2	-	176	1	Intergenic	novelGene_9220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151404827	151404651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_151404700_151404800
PB_novel_25034_0	chr2	+	157	1	Intergenic	novelGene_9221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAATAA	NA	False	NA	NA	False	NA	NA	NA	151791852	151792009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_151791900_151792000
PB_novel_25037_0	chr2	+	176	1	Intergenic	novelGene_9222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	151856970	151857146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_151857000_151857100
PB_novel_25043_0	chr2	-	175	1	Intergenic	novelGene_9223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAGAAAAAAGCCCA	8975	False	NA	NA	False	NA	NA	NA	151950400	151950225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_151950200_151950400
PB_novel_25052_0	chr2	-	173	1	Intergenic	novelGene_9224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152072578	152072405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_152072400_152072600
PB_novel_25053_0	chr2	-	175	1	Intergenic	novelGene_9225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAATCCTACCTTAAA	NA	False	NA	NA	False	NA	NA	NA	152073553	152073378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_152073400_152073600
PB_novel_25057_0	chr2	-	176	1	Intergenic	novelGene_9226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	152117817	152117641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_152117600_152117800
PB_novel_25065_0	chr2	+	178	1	Intergenic	novelGene_9227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152196675	152196853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_152196700_152196900
PB_novel_25068_0	chr2	+	179	1	Intergenic	novelGene_9228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAATCTTAAAAAAAA	7642	False	NA	NA	False	NA	NA	NA	152250984	152251163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_152251000_152251200
PB_novel_25070_0	chr2	-	187	1	Intergenic	novelGene_9229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAATCAAAATAAATAG	NA	False	NA	NA	False	NA	NA	NA	152266333	152266146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_152266100_152266300
PB_novel_25072_0	chr2	-	182	1	Intergenic	novelGene_9230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAGAAACAAA	5391	False	NA	NA	False	NA	NA	NA	152338704	152338522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_152338500_152338700
PB_novel_25075_1	chr2	+	178	1	Intergenic	novelGene_9231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152507910	152508088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_152507900_152508100
PB_novel_25076_0	chr2	+	177	1	Intergenic	novelGene_9232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	152515567	152515744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_152515600_152515700
PB_novel_25085_0	chr2	-	169	1	Intergenic	novelGene_9233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAGATGTCA	NA	False	NA	NA	False	NA	NA	NA	152695930	152695761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_152695800_152695900
PB_novel_25087_0	chr2	+	196	1	Intergenic	novelGene_9234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCTATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152719312	152719508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_152719300_152719500
PB_novel_25092_1	chr2	-	175	1	Intergenic	novelGene_9236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	153142838	153142663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_153142700_153142800
PB_novel_25095_0	chr2	+	174	1	Intergenic	novelGene_9235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	675	False	NA	NA	False	NA	NA	NA	153015281	153015455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_153015300_153015500
PB_novel_25099_0	chr2	-	3726	1	NIC	ENSMUSG00000051413.18	novel	5485	3	NA	NA	1233	-5178	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	153078595	153074869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_153074900_153078600
PB_novel_25106_0	chr2	+	167	1	Intergenic	novelGene_9237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	2755	False	NA	NA	False	NA	NA	NA	153150242	153150409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_153150200_153150400
PB_novel_25108_0	chr2	-	4180	1	NIC	ENSMUSG00000073236.5	novel	1898	2	NA	NA	139	-335	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATACTTGCTAAAA	9414	False	NA	NA	False	NA	NA	NA	153187591	153183411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_153183400_153187600
PB_novel_25112_0	chr2	-	133	1	Intergenic	novelGene_9238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	1177	False	NA	NA	False	NA	NA	NA	153195828	153195695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_153195700_153195800
PB_novel_25113_0	chr2	+	176	1	Intergenic	novelGene_9239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9348	False	NA	NA	False	NA	NA	NA	153201149	153201325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_153201100_153201300
PB_novel_25115_0	chr2	+	2573	1	Intergenic	novelGene_9240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	153204762	153207335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_153204800_153207300
PB_novel_25117_0	chr2	-	1002	1	Antisense	novelGene_ENSMUSG00000042548.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACAAAAAAAAAAAAAAAAG	422	False	NA	NA	False	NA	NA	NA	153241294	153240292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_153240300_153241300
PB_novel_25118_0	chr2	+	2472	1	Intergenic	novelGene_9241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	153256052	153258524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_153256100_153258500
PB_novel_25119_0	chr2	-	4025	1	Intergenic	novelGene_9242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	153273293	153269268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_153269300_153273300
PB_novel_25124_0	chr2	+	176	1	Intergenic	novelGene_9243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAACCAAAAAACTCA	NA	False	NA	NA	False	NA	NA	NA	153404910	153405086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_153404900_153405100
PB_novel_25131_0	chr2	-	173	1	Intergenic	novelGene_9244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	153564286	153564113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_153564100_153564300
PB_novel_25140_0	chr2	+	174	1	Antisense	novelGene_ENSMUSG00000027487.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAATTAGAAAAACAAACA	786	False	NA	NA	False	NA	NA	NA	154214891	154215065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_154214900_154215100
PB_novel_25141_0	chr2	+	173	1	Intergenic	novelGene_9245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATCAGAGTCAAAA	6311	False	NA	NA	False	NA	NA	NA	154230067	154230240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154230100_154230200
PB_novel_25143_0	chr2	+	174	1	Intergenic	novelGene_9246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	154237379	154237553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154237400_154237600
PB_novel_25145_0	chr2	-	157	1	Intergenic	novelGene_9247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	154255291	154255134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_154255100_154255300
PB_novel_25146_0	chr2	+	181	1	Intergenic	novelGene_9248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	154257203	154257384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154257200_154257400
PB_novel_25148_0	chr2	+	169	1	Intergenic	novelGene_9249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACTAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	154272314	154272483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154272300_154272500
PB_novel_25149_2	chr2	+	177	1	Intergenic	novelGene_9253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAATAATAAT	NA	False	NA	NA	False	NA	NA	NA	154417355	154417532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154417400_154417500
PB_novel_25153_0	chr2	+	176	1	Intergenic	novelGene_9250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAGATCAAAA	NA	False	NA	NA	False	NA	NA	NA	154292737	154292913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154292700_154292900
PB_novel_25156_0	chr2	-	172	1	Intergenic	novelGene_9251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	154320496	154320324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_154320300_154320500
PB_novel_25159_0	chr2	+	171	1	Intergenic	novelGene_9252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	154369776	154369947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154369800_154369900
PB_novel_25167_0	chr2	+	161	1	Intergenic	novelGene_9254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	154421761	154421922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154421800_154421900
PB_novel_25168_0	chr2	+	160	1	Intergenic	novelGene_9255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	6846	False	NA	NA	False	NA	NA	NA	154435599	154435759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154435600_154435800
PB_novel_25177_0	chr2	+	175	1	Intergenic	novelGene_9256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATGTTTTGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	154515119	154515294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154515100_154515300
PB_novel_25179_0	chr2	-	179	1	Intergenic	novelGene_9257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAATAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	154589795	154589616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_154589600_154589800
PB_novel_25188_0	chr2	+	188	1	Intergenic	novelGene_9258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATCTTTTAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	154644233	154644421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154644200_154644400
PB_novel_25193_0	chr2	-	179	1	Intergenic	novelGene_9259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAACAAAAAA	5742	False	NA	NA	False	NA	NA	NA	154685513	154685334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_154685300_154685500
PB_novel_25199_0	chr2	-	175	1	Intergenic	novelGene_9260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAAAAAACA	2581	False	NA	NA	False	NA	NA	NA	154896570	154896395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_154896400_154896600
PB_novel_25203_0	chr2	+	180	1	Intergenic	novelGene_9261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	154918977	154919157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154919000_154919200
PB_novel_25205_0	chr2	+	152	1	Intergenic	novelGene_9262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGATTTGAAAA	NA	False	NA	NA	False	NA	NA	NA	154957919	154958071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_154957900_154958100
PB_novel_25216_0	chr2	+	172	1	Intergenic	novelGene_9263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAACTGGCG	1466	False	NA	NA	False	NA	NA	NA	155134992	155135164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_155135000_155135200
PB_novel_25217_0	chr2	+	1321	2	Antisense	novelGene_ENSMUSG00000038383.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	155153187	155154656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_155153242_155153389
PB_novel_25220_0	chr2	+	172	1	Intergenic	novelGene_9264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAGAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	155186178	155186350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_155186200_155186400
PB_novel_25224_0	chr2	+	176	1	Intergenic	novelGene_9265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAATAAAAAA	8353	False	NA	NA	False	NA	NA	NA	155207970	155208146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_155208000_155208100
PB_novel_25228_0	chr2	+	2246	1	NIC	ENSMUSG00000038375.16	novel	3979	4	NA	NA	17	-1834	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCCAAAAAAAAAAAA	4104	False	NA	NA	False	NA	NA	NA	155223796	155226042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_155223800_155226000
PB_novel_25229_0	chr2	-	176	1	Intergenic	novelGene_9266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGGAAAGAAAGGAT	NA	False	NA	NA	False	NA	NA	NA	155234767	155234591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_155234600_155234800
PB_novel_25231_0	chr2	-	176	1	Intergenic	novelGene_9267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATAAAACGCCTGA	NA	False	NA	NA	False	NA	NA	NA	155283666	155283490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_155283500_155283700
PB_novel_25241_0	chr2	+	173	1	Antisense	novelGene_ENSMUSG00000038324.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAAAGGTGAGTG	NA	False	NA	NA	False	NA	NA	NA	155486474	155486647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_155486500_155486600
PB_novel_25247_0	chr2	+	176	1	Intergenic	novelGene_9268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACATAGC	6270	False	NA	NA	False	NA	NA	NA	155574446	155574622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_155574400_155574600
PB_novel_25261_0	chr2	+	175	1	Intergenic	novelGene_9270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAATAGAAATAGTA	NA	False	NA	NA	False	NA	NA	NA	155792524	155792699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_155792500_155792700
PB_novel_25262_0	chr2	+	167	1	Intergenic	novelGene_9269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAAAAAGACATG	NA	False	NA	NA	False	NA	NA	NA	155769155	155769322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_155769200_155769300
PB_novel_25266_0	chr2	+	176	1	Intergenic	novelGene_9271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATTAATGTGGA	NA	False	NA	NA	False	NA	NA	NA	155853931	155854107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_155853900_155854100
PB_novel_25268_0	chr2	-	132	1	Intergenic	novelGene_9272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	155870194	155870062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_155870100_155870200
PB_novel_25269_0	chr2	+	176	1	Intergenic	novelGene_9273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGTGA	3586	False	NA	NA	False	NA	NA	NA	155872822	155872998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_155872800_155873000
PB_novel_25271_0	chr2	-	4860	1	FSM	ENSMUSG00000103285.2	ENSMUST00000192167.2	1682	1	-3178	0	-3178	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	155931389	155926529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_155926500_155931400
PB_novel_25272_0	chr2	+	1818	1	Intergenic	novelGene_9274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	155948438	155950256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_155948400_155950300
PB_novel_25276_0	chr2	-	169	1	Intergenic	novelGene_9275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAGAA	5249	False	NA	NA	False	NA	NA	NA	155974206	155974037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_155974000_155974200
PB_novel_25278_0	chr2	+	178	1	Intergenic	novelGene_9276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAATAACTGA	3324	False	NA	NA	False	NA	NA	NA	155982931	155983109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_155982900_155983100
PB_novel_25283_0	chr2	+	217	1	Intergenic	novelGene_9277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACTAC	NA	False	NA	NA	False	TATAAA	-15	NA	156001910	156002127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_156001900_156002100
PB_novel_25284_0	chr2	-	167	1	Intergenic	novelGene_9278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATCTTTAAAAAAAAAAC	3938	False	NA	NA	False	NA	NA	NA	156012818	156012651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_156012700_156012800
PB_novel_25290_0	chr2	-	163	1	Intergenic	novelGene_9279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAAATACA	NA	False	NA	NA	False	NA	NA	NA	156030207	156030044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_156030000_156030200
PB_novel_25298_0	chr2	+	152	1	Intergenic	novelGene_9280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATTAATTAAA	NA	False	NA	NA	False	NA	NA	NA	156062209	156062361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_156062200_156062400
PB_novel_25304_0	chr2	-	179	1	Intergenic	novelGene_9281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAATGAATGAA	NA	False	NA	NA	False	NA	NA	NA	156118175	156117996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_156118000_156118200
PB_novel_25307_1	chr2	+	175	1	Intergenic	novelGene_9282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAATAATAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	156162851	156163026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_156162900_156163000
PB_novel_25311_0	chr2	-	189	1	Intergenic	novelGene_9283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATCTTTAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	156253822	156253633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_156253600_156253800
PB_novel_25324_0	chr2	-	177	1	Intergenic	novelGene_9284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156593760	156593583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_156593600_156593800
PB_novel_25331_0	chr2	-	179	1	Intergenic	novelGene_9285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAATGGCCGC	NA	False	NA	NA	False	NA	NA	NA	156667167	156666988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_156667000_156667200
PB_novel_25337_0	chr2	+	170	1	Intergenic	novelGene_9286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAGATAAA	6350	False	NA	NA	False	NA	NA	NA	156706755	156706925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_156706800_156706900
PB_novel_25338_0	chr2	-	180	1	Intergenic	novelGene_9287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCCAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	156725278	156725098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_156725100_156725300
PB_novel_25342_0	chr2	-	175	1	Intergenic	novelGene_9288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGATATCCTT	NA	False	NA	NA	False	NA	NA	NA	156825612	156825437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_156825400_156825600
PB_novel_25343_0	chr2	+	176	1	Intergenic	novelGene_9289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACAAACTTT	NA	False	NA	NA	False	NA	NA	NA	156826638	156826814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_156826600_156826800
PB_novel_25356_0	chr2	-	192	1	Intergenic	novelGene_9290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	9308	False	NA	NA	False	NA	NA	NA	156944087	156943895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_156943900_156944100
PB_novel_25357_0	chr2	+	175	1	Intergenic	novelGene_9291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTTTTTTACAAG	NA	False	NA	NA	False	NA	NA	NA	156956752	156956927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_156956800_156956900
PB_novel_25359_0	chr2	+	2079	1	Intergenic	novelGene_9292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156973981	156976060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_156974000_156976100
PB_novel_25366_0	chr2	+	1054	1	Antisense	novelGene_ENSMUSG00000027641.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157019198	157020252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_157019200_157020300
PB_novel_25375_0	chr2	-	164	1	Antisense	novelGene_ENSMUSG00000027642.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	9933	False	NA	NA	False	NA	NA	NA	157124039	157123875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_157123900_157124000
PB_novel_25378_0	chr2	-	182	1	Intergenic	novelGene_9293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATCTCTTCCTA	1252	False	NA	NA	False	NA	NA	NA	157203260	157203078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_157203100_157203300
PB_novel_25382_0	chr2	+	172	1	Intergenic	novelGene_9294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157243703	157243875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_157243700_157243900
PB_novel_25388_0	chr2	+	3195	1	Intergenic	novelGene_9295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATGCAAAAAAAAAAAAAAA	1567	False	NA	NA	False	NA	NA	NA	157394303	157397498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_157394300_157397500
PB_novel_25396_0	chr2	-	179	1	Intergenic	novelGene_9296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	157479672	157479493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_157479500_157479700
PB_novel_25400_1	chr2	-	180	1	Intergenic	novelGene_9298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157662600	157662420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_157662400_157662600
PB_novel_25402_0	chr2	-	177	1	Intergenic	novelGene_9297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	157613594	157613417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_157613400_157613600
PB_novel_25429_0	chr2	+	170	1	Intergenic	novelGene_9299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	158234261	158234431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_158234300_158234400
PB_novel_25438_0	chr2	-	180	1	Antisense	novelGene_ENSMUSG00000037754.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3711	False	NA	NA	False	NA	NA	NA	158606950	158606770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_158606800_158607000
PB_novel_25441_0	chr2	-	175	1	Intergenic	novelGene_9300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATTGC	NA	False	NA	NA	False	NA	NA	NA	159937254	159937079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_159937100_159937300
PB_novel_25442_0	chr2	+	199	1	Intergenic	novelGene_9301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	160306659	160306858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_160306700_160306900
PB_novel_25443_0	chr2	+	172	1	Intergenic	novelGene_9303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	160457502	160457674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_160457500_160457700
PB_novel_25446_0	chr2	+	174	1	Intergenic	novelGene_9302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATACAGAAGAAC	NA	False	NA	NA	False	NA	NA	NA	160405636	160405810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_160405600_160405800
PB_novel_25455_0	chr2	+	176	1	Intergenic	novelGene_9304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	160509056	160509232	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_160509100_160509200
PB_novel_25458_0	chr2	-	161	1	Intergenic	novelGene_9305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	160541339	160541178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_160541200_160541300
PB_novel_25463_0	chr2	-	3353	1	Intergenic	novelGene_9306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACTCGAAAAAAAAAAAAAAG	8490	False	NA	NA	False	NA	NA	NA	160942178	160938825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_160938800_160942200
PB_novel_25464_0	chr2	-	4187	1	NIC	ENSMUSG00000057133.15	novel	3092	17	NA	NA	-21	-69826	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	160950963	160946776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_160946800_160951000
PB_novel_25486_0	chr2	-	145	1	Intergenic	novelGene_9307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAATTAAAAA	3968	False	NA	NA	False	NA	NA	NA	162920692	162920547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_162920500_162920700
PB_novel_25494_0	chr2	+	2596	1	Antisense	novelGene_ENSMUSG00000035399.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAACAACAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	163252452	163255048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_163252500_163255000
PB_novel_25512_0	chr2	+	131	1	Intergenic	novelGene_9308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATTTTAAAAAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	163819978	163820109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_163820000_163820100
PB_novel_25517_0	chr2	-	175	1	Intergenic	novelGene_9309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGTGA	NA	False	NA	NA	False	NA	NA	NA	163883966	163883791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_163883800_163884000
PB_novel_25519_0	chr2	+	1126	1	Antisense	novelGene_ENSMUSG00000018322.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	163906973	163908099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_163907000_163908100
PB_novel_25524_0	chr2	-	186	1	Intergenic	novelGene_9310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	163937536	163937350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_163937400_163937500
PB_novel_25530_0	chr2	+	3486	1	Antisense	novelGene_ENSMUSG00000017009.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	7567	False	NA	NA	False	GATAAA	-44	NA	164263565	164267051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_164263600_164267100
PB_novel_25531_0	chr2	+	180	1	Intergenic	novelGene_9311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAGAAAA	9973	False	NA	NA	False	NA	NA	NA	164300250	164300430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_164300200_164300400
PB_novel_25532_0	chr2	+	156	1	Intergenic	novelGene_9312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	5507	False	NA	NA	False	NA	NA	NA	164322987	164323143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_164323000_164323100
PB_novel_25542_0	chr2	+	176	1	Intergenic	novelGene_9313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATCTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	164610738	164610914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_164610700_164610900
PB_novel_25548_0	chr2	+	177	1	Intergenic	novelGene_9314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAACT	NA	False	NA	NA	False	NA	NA	NA	164639279	164639456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_164639300_164639500
PB_novel_25549_0	chr2	+	174	1	Intergenic	novelGene_9315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAACAAAACAAACGT	NA	False	NA	NA	False	NA	NA	NA	164640378	164640552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_164640400_164640600
PB_novel_25555_0	chr2	-	172	1	Intergenic	novelGene_9316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	144	False	NA	NA	False	NA	NA	NA	164657048	164656876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_164656900_164657000
PB_novel_25558_0	chr2	+	177	1	Intergenic	novelGene_9317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	164677972	164678149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_164678000_164678100
PB_novel_25561_0	chr2	-	176	1	Intergenic	novelGene_9318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	164708286	164708110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_164708100_164708300
PB_novel_25566_0	chr2	-	286	1	Intergenic	novelGene_9319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	164717884	164717598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_164717600_164717900
PB_novel_25567_0	chr2	+	172	1	Intergenic	novelGene_9320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4379	False	NA	NA	False	NA	NA	NA	164719706	164719878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_164719700_164719900
PB_novel_25568_0	chr2	-	1672	1	Antisense	novelGene_ENSMUSG00000039849.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	164721685	164720013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_164720000_164721700
PB_novel_25569_0	chr2	+	2047	1	NIC	ENSMUSG00000039849.7	novel	611	2	NA	NA	22	-1685	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAGGAAAAAAAAAAAAA	5971	False	NA	NA	False	NA	NA	NA	164721298	164723345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_164721300_164723300
PB_novel_25579_0	chr2	-	180	1	Intergenic	novelGene_9321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAGAAAAAAGAAAACAC	NA	False	NA	NA	False	NA	NA	NA	164946837	164946657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_164946700_164946800
PB_novel_25585_0	chr2	-	174	1	Intergenic	novelGene_9322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAATAAATAAAA	3571	False	NA	NA	False	NA	NA	NA	165231148	165230974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_165231000_165231100
PB_novel_25594_0	chr2	+	174	1	Intergenic	novelGene_9323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	165642410	165642584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_165642400_165642600
PB_novel_25600_0	chr2	+	176	1	Intergenic	novelGene_9324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	165714368	165714544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_165714400_165714500
PB_novel_25603_0	chr2	+	177	1	Intergenic	novelGene_9325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	3998	False	NA	NA	False	NA	NA	NA	165734088	165734265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_165734100_165734300
PB_novel_25604_0	chr2	+	169	1	Intergenic	novelGene_9326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	5381	False	NA	NA	False	NA	NA	NA	165735471	165735640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_165735500_165735600
PB_novel_25605_0	chr2	+	165	1	Intergenic	novelGene_9327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	165751163	165751328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_165751200_165751300
PB_novel_25606_0	chr2	-	176	1	Intergenic	novelGene_9328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	165757967	165757791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_165757800_165758000
PB_novel_25607_0	chr2	-	168	1	Intergenic	novelGene_9329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1790	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	165758382	165758214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_165758200_165758400
PB_novel_25608_0	chr2	+	175	1	Intergenic	novelGene_9330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGAATTAGA	NA	False	NA	NA	False	NA	NA	NA	165762766	165762941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_165762800_165762900
PB_novel_25611_0	chr2	-	196	1	Intergenic	novelGene_9331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	443	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACTTAAAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	165768104	165767908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_165767900_165768100
PB_novel_25617_0	chr2	+	174	1	Intergenic	novelGene_9332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	165821817	165821991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_165821800_165822000
PB_novel_25620_0	chr2	-	1602	1	Intergenic	novelGene_9333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAATTAAAAAAAAAA	894	False	NA	NA	False	NA	NA	NA	165840924	165839322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_165839300_165840900
PB_novel_25621_0	chr2	-	176	1	Intergenic	novelGene_9334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGAAGTGCTTT	6962	False	NA	NA	False	NA	NA	NA	165854645	165854469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_165854500_165854600
PB_novel_25627_1	chr2	-	966	3	Antisense	novelGene_ENSMUSG00000027678.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	165912542	165910966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_165911299_165911729_165911871_165912049
PB_novel_25629_0	chr2	-	1576	1	Antisense	novelGene_ENSMUSG00000027678.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	165912542	165910966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_165911000_165912500
PB_novel_25634_0	chr2	-	177	1	Intergenic	novelGene_9335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	295	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAATTGT	NA	False	NA	NA	False	NA	NA	NA	165957535	165957358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_165957400_165957500
PB_novel_25641_0	chr2	-	180	1	Intergenic	novelGene_9336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAATTTTTAATGAAAA	NA	False	NA	NA	False	NA	NA	NA	166199199	166199019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166199000_166199200
PB_novel_25653_0	chr2	-	176	1	Intergenic	novelGene_9337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	7586	False	NA	NA	False	NA	NA	NA	166596108	166595932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166595900_166596100
PB_novel_25662_0	chr2	-	132	1	Intergenic	novelGene_9338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGGACA	NA	False	NA	NA	False	NA	NA	NA	166751046	166750914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166750900_166751000
PB_novel_25663_0	chr2	-	173	1	Intergenic	novelGene_9339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCAAAAAGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166751441	166751268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166751300_166751400
PB_novel_25664_0	chr2	-	213	1	Intergenic	novelGene_9340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAGACATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166762238	166762025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166762000_166762200
PB_novel_25666_0	chr2	-	764	1	Intergenic	novelGene_9341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	166767268	166766504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166766500_166767300
PB_novel_25669_0	chr2	+	167	1	Intergenic	novelGene_9342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	2480	False	NA	NA	False	NA	NA	NA	166808128	166808295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_166808100_166808300
PB_novel_25677_0	chr2	+	177	1	Intergenic	novelGene_9343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2168	False	NA	NA	False	NA	NA	NA	166829238	166829415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_166829200_166829400
PB_novel_25679_0	chr2	-	155	1	Intergenic	novelGene_9344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGCCCAGA	NA	False	NA	NA	False	NA	NA	NA	166839184	166839029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166839000_166839200
PB_novel_25680_0	chr2	+	175	1	Intergenic	novelGene_9345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	166840382	166840557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_166840400_166840600
PB_novel_25682_1	chr2	-	171	1	Intergenic	novelGene_9348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAAATCTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166856306	166856135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166856100_166856300
PB_novel_25683_0	chr2	-	178	1	Intergenic	novelGene_9346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATCCTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166850309	166850131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166850100_166850300
PB_novel_25684_0	chr2	-	168	1	Intergenic	novelGene_9347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	166853433	166853265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166853300_166853400
PB_novel_25687_0	chr2	-	176	1	Intergenic	novelGene_9349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	166863259	166863083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166863100_166863300
PB_novel_25688_0	chr2	-	175	1	Intergenic	novelGene_9350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	166872381	166872206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166872200_166872400
PB_novel_25690_0	chr2	-	161	1	Intergenic	novelGene_9351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	166910890	166910729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166910700_166910900
PB_novel_25691_0	chr2	-	176	1	Intergenic	novelGene_9352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAAAGTTAGAGAT	NA	False	NA	NA	False	NA	NA	NA	166911490	166911314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_166911300_166911500
PB_novel_25694_0	chr2	+	177	1	Intergenic	novelGene_9353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	167037768	167037945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_167037800_167037900
PB_novel_25697_0	chr2	+	170	1	Intergenic	novelGene_9354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGCC	NA	False	NA	NA	False	NA	NA	NA	167075162	167075332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_167075200_167075300
PB_novel_25701_0	chr2	+	176	1	Intergenic	novelGene_9355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATATTTCCCACA	NA	False	NA	NA	False	NA	NA	NA	167109197	167109373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_167109200_167109400
PB_novel_25706_0	chr2	-	4512	1	Intergenic	novelGene_9356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCCAAAAAAAAAAAA	8911	False	NA	NA	False	NA	NA	NA	167181388	167176876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_167176900_167181400
PB_novel_25711_0	chr2	+	175	1	Intergenic	novelGene_9357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	167207283	167207458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_167207300_167207500
PB_novel_25713_0	chr2	+	155	1	Intergenic	novelGene_9358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAAAATCCTCTGCC	NA	False	NA	NA	False	NA	NA	NA	167221876	167222031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_167221900_167222000
PB_novel_25716_0	chr2	-	181	1	Intergenic	novelGene_9359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAAAGATAG	NA	False	NA	NA	False	NA	NA	NA	167283988	167283807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_167283800_167284000
PB_novel_25730_0	chr2	-	174	1	Intergenic	novelGene_9360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAAATAAAAATT	NA	False	NA	NA	False	NA	NA	NA	167508012	167507838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_167507800_167508000
PB_novel_25731_0	chr2	-	2379	1	Intergenic	novelGene_9361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	167526848	167524469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_167524500_167526800
PB_novel_25734_0	chr2	-	176	1	Intergenic	novelGene_9362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	167674298	167674122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_167674100_167674300
PB_novel_25748_0	chr2	+	175	1	Intergenic	novelGene_9363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	167981859	167982034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_167981900_167982000
PB_novel_25757_0	chr2	-	3659	1	NIC	ENSMUSG00000051149.16	novel	4917	5	NA	NA	908	2214	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATGG	4228	False	NA	NA	False	NA	NA	NA	168047721	168044062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_-_168044100_168047700
PB_novel_25759_2	chr2	+	7094	1	Antisense	novelGene_ENSMUSG00000078919.11_AS_novelGene_ENSMUSG00000093752.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	168050500	168057594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_168050500_168057600
PB_novel_25767_0	chr2	-	174	1	Intergenic	novelGene_9364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACACACACACAAACCA	6204	False	NA	NA	False	NA	NA	NA	168224922	168224748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_168224700_168224900
PB_novel_25775_1	chr2	-	178	1	Intergenic	novelGene_9365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATATTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	168284985	168284807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_168284800_168285000
PB_novel_25782_0	chr2	+	183	1	Intergenic	novelGene_9366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAAAAGGTTTA	2463	False	NA	NA	False	NA	NA	NA	168551516	168551699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_168551500_168551700
PB_novel_25789_0	chr2	+	848	1	Antisense	novelGene_ENSMUSG00000027547.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAACA	559	False	NA	NA	False	AATAAA	-16	NA	168591017	168591865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_168591000_168591900
PB_novel_25791_0	chr2	-	180	1	Intergenic	novelGene_9367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	168631509	168631329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_168631300_168631500
PB_novel_25794_0	chr2	+	126	1	Intergenic	novelGene_9368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAATAAATAAATAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	168657307	168657433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_168657300_168657400
PB_novel_25796_0	chr2	+	175	1	Intergenic	novelGene_9369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTAAAAAAAAAGTTTAAG	NA	False	NA	NA	False	NA	NA	NA	168664723	168664898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_168664700_168664900
PB_novel_25797_0	chr2	+	176	1	Intergenic	novelGene_9370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAC	5485	False	NA	NA	False	NA	NA	NA	168676002	168676178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_168676000_168676200
PB_novel_25799_0	chr2	-	167	1	Intergenic	novelGene_9371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	168678409	168678242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_168678200_168678400
PB_novel_25800_0	chr2	+	287	1	Intergenic	novelGene_9372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	168686853	168687140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_168686900_168687100
PB_novel_25806_0	chr2	+	132	1	Intergenic	novelGene_9373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	375	False	NA	NA	False	NA	NA	NA	168772114	168772246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_168772100_168772200
PB_novel_25808_0	chr2	+	176	1	Intergenic	novelGene_9374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4704	False	NA	NA	False	NA	NA	NA	168783336	168783512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_168783300_168783500
PB_novel_25809_0	chr2	+	178	1	Antisense	novelGene_ENSMUSG00000027551.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	168792881	168793059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_168792900_168793100
PB_novel_25814_1	chr2	+	2335	1	Intergenic	novelGene_9375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTACAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-23	NA	168847947	168850282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_168847900_168850300
PB_novel_25820_0	chr2	-	168	1	Intergenic	novelGene_9376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTTTTTTTAAACATA	NA	False	NA	NA	False	NA	NA	NA	169118440	169118272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_169118300_169118400
PB_novel_25828_0	chr2	-	188	1	Intergenic	novelGene_9377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	177	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	169944400	169944212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_169944200_169944400
PB_novel_25831_0	chr2	-	177	1	Intergenic	novelGene_9378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	170005372	170005195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_170005200_170005400
PB_novel_25836_0	chr2	-	176	1	Intergenic	novelGene_9379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	170041611	170041435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_170041400_170041600
PB_novel_25837_0	chr2	+	177	1	Intergenic	novelGene_9380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	170044848	170045025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_170044800_170045000
PB_novel_25839_0	chr2	-	175	1	Intergenic	novelGene_9381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	170055846	170055671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_170055700_170055800
PB_novel_25840_0	chr2	+	176	1	Intergenic	novelGene_9382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATCTTAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	170066790	170066966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_170066800_170067000
PB_novel_25842_0	chr2	-	160	1	Intergenic	novelGene_9383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAATATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	170076900	170076740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_170076700_170076900
PB_novel_25846_0	chr2	+	345	1	FSM	ENSMUSG00000084013.2	ENSMUST00000118388.2	846	1	669	-168	669	168	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	170127623	170127968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_170127600_170128000
PB_novel_25848_0	chr2	-	177	1	Intergenic	novelGene_9384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	7821	False	NA	NA	False	NA	NA	NA	170143872	170143695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_170143700_170143900
PB_novel_25881_0	chr2	-	170	1	Intergenic	novelGene_9385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTAAAAAATATGTTT	NA	False	NA	NA	False	NA	NA	NA	172263309	172263139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_172263100_172263300
PB_novel_25884_0	chr2	-	172	1	Intergenic	novelGene_9386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATACATTTTAAAAAG	NA	False	NA	NA	False	NA	NA	NA	172317021	172316849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_172316800_172317000
PB_novel_25885_0	chr2	+	177	1	Intergenic	novelGene_9387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	172322849	172323026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_172322800_172323000
PB_novel_25900_0	chr2	-	172	1	Intergenic	novelGene_9388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	172479765	172479593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_172479600_172479800
PB_novel_25907_0	chr2	+	177	1	Intergenic	novelGene_9390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	172810188	172810365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_172810200_172810400
PB_novel_25914_0	chr2	+	438	1	Intergenic	novelGene_9391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATCCAAAAAAAAAACAAAAA	4127	False	NA	NA	False	NA	NA	NA	173086932	173087370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_173086900_173087400
PB_novel_25916_0	chr2	-	3518	1	Genic_Genomic	ENSMUSG00000038400.16	novel	NA	NA	NA	NA	-2	-44807	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	1080	False	NA	NA	False	NA	NA	NA	173118328	173114810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_-_173114800_173118300
PB_novel_25920_0	chr2	-	176	1	Intergenic	novelGene_9392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	173191081	173190905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_173190900_173191100
PB_novel_25929_1	chr2	+	7662	1	FSM	ENSMUSG00002076469.1	ENSMUST00020182820.1	64	1	-115	-7483	-115	7483	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATTAAAAAAAAAAAAAA	7431	False	NA	NA	False	NA	NA	NA	174128285	174135947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_174128300_174135900
PB_novel_25930_4	chr2	-	1517	4	Antisense	novelGene_ENSMUSG00000027523.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	3.2659863237109	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACTTTCA	528	False	NA	NA	False	NA	NA	NA	174169177	174163271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_174163991_174165456_174165759_174167686_174167944_174168938
PB_novel_25931_0	chr2	-	173	1	Intergenic	novelGene_9393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACTTTCA	6261	False	NA	NA	False	NA	NA	NA	174163444	174163271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_174163300_174163400
PB_novel_25933_0	chr2	-	172	1	Intergenic	novelGene_9394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTTTAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	174244801	174244629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_174244600_174244800
PB_novel_25936_0	chr2	+	160	1	Intergenic	novelGene_9395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	174661525	174661685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_174661500_174661700
PB_novel_25940_0	chr2	+	165	1	Intergenic	novelGene_9396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	174841960	174842125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_174842000_174842100
PB_novel_25941_2	chr2	-	177	1	Intergenic	novelGene_9402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	356	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2075	False	NA	NA	False	NA	NA	NA	174978924	174978747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_174978700_174978900
PB_novel_25942_0	chr2	-	165	1	Intergenic	novelGene_9398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAATAAATCTTTATAAAA	NA	False	NA	NA	False	NA	NA	NA	174900489	174900324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_174900300_174900500
PB_novel_25943_0	chr2	+	967	1	Genic_Genomic	ENSMUSG00000078906.10	novel	NA	NA	NA	NA	6781	454	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCAAATTTTAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	174858892	174859859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_174858900_174859900
PB_novel_25945_0	chr2	+	1683	1	Intergenic	novelGene_9397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATATTAAAAAAAAAAGACAA	NA	False	NA	-13	True	NA	NA	NA	174861190	174862873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_174861200_174862900
PB_novel_25950_0	chr2	+	177	1	Intergenic	novelGene_9399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCACATAATTATAAACA	NA	False	NA	NA	False	NA	NA	NA	174913983	174914160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_174914000_174914200
PB_novel_25956_0	chr2	-	177	1	Intergenic	novelGene_9400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCACATAATTATAAAAA	NA	False	NA	NA	False	NA	NA	NA	174965490	174965313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_174965300_174965500
PB_novel_25960_0	chr2	+	177	1	Intergenic	novelGene_9401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	174970566	174970743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_174970600_174970700
PB_novel_25963_0	chr2	-	177	1	Intergenic	novelGene_9403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCACATAATTATAAAAA	NA	False	NA	NA	False	NA	NA	NA	175030476	175030299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_175030300_175030500
PB_novel_25965_0	chr2	-	176	1	Intergenic	novelGene_9404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	175046370	175046194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_175046200_175046400
PB_novel_25991_0	chr2	+	176	1	Intergenic	novelGene_9405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATCACATAATTATAAAA	NA	False	NA	NA	False	NA	NA	NA	175776848	175777024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_175776800_175777000
PB_novel_25994_0	chr2	-	177	1	Intergenic	novelGene_9406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCACATAATTATAAAAA	NA	False	NA	NA	False	NA	NA	NA	175877150	175876973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_175877000_175877200
PB_novel_25998_0	chr2	-	182	1	Intergenic	novelGene_9407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAAAGAAATTTT	NA	False	NA	NA	False	NA	NA	NA	176032973	176032791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_176032800_176033000
PB_novel_26012_0	chr2	+	177	1	Intergenic	novelGene_9408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCACATAATTATAAAAA	NA	False	NA	NA	False	NA	NA	NA	176419846	176420023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_176419800_176420000
PB_novel_26016_0	chr2	+	177	1	Intergenic	novelGene_9409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCACATAATTATAAACA	NA	False	NA	NA	False	NA	NA	NA	176509260	176509437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_176509300_176509400
PB_novel_26019_0	chr2	+	182	1	Intergenic	novelGene_9410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAAAGAAATTTT	NA	False	NA	NA	False	NA	NA	NA	176554992	176555174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_176555000_176555200
PB_novel_26026_0	chr2	+	177	1	Intergenic	novelGene_9411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCACATAATTATAAAAA	2480	False	NA	NA	False	NA	NA	NA	176710813	176710990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_176710800_176711000
PB_novel_26030_0	chr2	+	169	1	Intergenic	novelGene_9412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCAAAAAAATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	176755951	176756120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_176756000_176756100
PB_novel_26031_0	chr2	-	177	1	Intergenic	novelGene_9413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCACATAATTATAAACA	NA	False	NA	NA	False	NA	NA	NA	176762699	176762522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_176762500_176762700
PB_novel_26032_0	chr2	-	184	1	Intergenic	novelGene_9414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	176764839	176764655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_176764700_176764800
PB_novel_26034_0	chr2	+	172	1	Intergenic	novelGene_9415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAGCATTAAAACATTT	NA	False	NA	NA	False	NA	NA	NA	176772622	176772794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_176772600_176772800
PB_novel_26036_0	chr2	+	1281	1	Antisense	novelGene_ENSMUSG00000082023.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACCAAAATTTAAAACAATT	NA	False	NA	NA	False	NA	NA	NA	176776734	176778015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_176776700_176778000
PB_novel_26048_0	chr2	-	176	1	Intergenic	novelGene_9416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATCACATAATTATAAAA	NA	False	NA	NA	False	NA	NA	NA	176878534	176878358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_176878400_176878500
PB_novel_26057_0	chr2	+	172	1	Intergenic	novelGene_9417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATTTTTTAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	176939858	176940030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_176939900_176940000
PB_novel_26061_0	chr2	-	177	1	Intergenic	novelGene_9418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAGTGCACAGAA	NA	False	NA	NA	False	NA	NA	NA	176949007	176948830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_176948800_176949000
PB_novel_26066_0	chr2	-	551	1	Intergenic	novelGene_9419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAATTCATACAGATAA	NA	False	NA	-33	True	NA	NA	NA	176958032	176957481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_176957500_176958000
PB_novel_26068_0	chr2	-	165	1	Intergenic	novelGene_9420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	176974190	176974025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_176974000_176974200
PB_novel_26088_0	chr2	-	2649	1	FSM	ENSMUSG00000085513.2	ENSMUST00000132460.2	877	1	284	-2056	284	2056	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	73	True	NA	NA	NA	177234066	177231417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_-_177231400_177234100
PB_novel_26104_0	chr2	-	177	1	Intergenic	novelGene_9421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCACATAATTATTAAAA	NA	False	NA	NA	False	NA	NA	NA	177467339	177467162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_177467200_177467300
PB_novel_26108_0	chr2	+	174	1	Intergenic	novelGene_9422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATAAAGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	177488867	177489041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_177488900_177489000
PB_novel_26115_0	chr2	-	177	1	Intergenic	novelGene_9423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCACATAATTATAAAAA	NA	False	NA	NA	False	NA	NA	NA	177581082	177580905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_177580900_177581100
PB_novel_26126_0	chr2	+	1484	1	FSM	ENSMUSG00000061897.6	ENSMUST00000118761.2	456	1	-9	-1019	-9	1019	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	ATTAAA	-15	NA	178819208	178820692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr2_+_178819200_178820700
PB_novel_26131_0	chr2	-	167	1	Intergenic	novelGene_9424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	179248037	179247870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_179247900_179248000
PB_novel_26140_0	chr2	-	180	1	Intergenic	novelGene_9425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAAGAAAA	63	False	NA	NA	False	NA	NA	NA	179806628	179806448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_179806400_179806600
PB_novel_26143_0	chr2	+	176	1	Intergenic	novelGene_9426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATAAGAGTGAATA	NA	False	NA	NA	False	NA	NA	NA	179885355	179885531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_179885400_179885500
PB_novel_26157_0	chr2	+	163	1	Intergenic	novelGene_9427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAACTTAAAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	180349935	180350098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_180349900_180350100
PB_novel_26159_0	chr2	-	183	1	Intergenic	novelGene_9428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAATCTTAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	180355473	180355290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_180355300_180355500
PB_novel_26160_0	chr2	+	176	1	Intergenic	novelGene_9429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	180357095	180357271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_180357100_180357300
PB_novel_26161_0	chr2	-	3216	1	Intergenic	novelGene_9430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	180364407	180361191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_180361200_180364400
PB_novel_26167_0	chr2	-	166	1	Intergenic	novelGene_9431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTAAAAAAAAAAAATCTAGC	1025	False	NA	NA	False	NA	NA	NA	180385770	180385604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_180385600_180385800
PB_novel_26174_0	chr2	-	170	1	Intergenic	novelGene_9432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	251	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	180549771	180549601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_180549600_180549800
PB_novel_26177_0	chr2	-	173	1	Intergenic	novelGene_9433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAAATACCATGA	1011	False	NA	NA	False	NA	NA	NA	180588360	180588187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_180588200_180588400
PB_novel_26179_0	chr2	-	163	1	Intergenic	novelGene_9434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	180632114	180631951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_180632000_180632100
PB_novel_26183_0	chr2	-	180	1	Intergenic	novelGene_9435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTAAAAAAAAATAATAAATA	NA	False	NA	NA	False	NA	NA	NA	180833869	180833689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_180833700_180833900
PB_novel_26190_0	chr2	+	2589	1	Antisense	novelGene_ENSMUSG00000038705.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCAAAAAAAAAAAAAAAAG	564	False	NA	NA	False	NA	NA	NA	180929587	180932176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_+_180929600_180932200
PB_novel_26191_0	chr2	+	1488	2	Genic_Genomic	ENSMUSG00000084033.4	novel	788	1	NA	NA	-4351	1011	multi-exon	FALSE	canonical	3	3	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTTTGTATATGCAGTA	566	False	NA	NA	False	NA	NA	NA	180929589	180935739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr2_+_180929904_180934565
PB_novel_26193_0	chr2	-	143	1	Intergenic	novelGene_9436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	180971347	180971204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_180971200_180971300
PB_novel_26202_1	chr2	-	185	1	Intergenic	novelGene_9437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAAAAAAGGCTTATAT	2189	False	NA	NA	False	NA	NA	NA	181200821	181200636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_181200600_181200800
PB_novel_26205_0	chr2	-	169	1	Intergenic	novelGene_9438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCTAAAAAAAAAAAAAAAA	7291	False	NA	NA	False	NA	NA	NA	181205836	181205667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_181205700_181205800
PB_novel_26209_0	chr2	+	175	1	Intergenic	novelGene_9439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAAACTGGAAC	7154	False	NA	NA	False	NA	NA	NA	181208332	181208507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_181208300_181208500
PB_novel_26210_0	chr2	-	176	1	Intergenic	novelGene_9440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACAGTG	6485	False	NA	NA	False	NA	NA	NA	181235549	181235373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_181235400_181235500
PB_novel_26211_0	chr2	+	171	1	Intergenic	novelGene_9441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAGAAAAAA	5555	False	NA	NA	False	NA	NA	NA	181246172	181246343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_181246200_181246300
PB_novel_26212_0	chr2	+	205	1	Intergenic	novelGene_9442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGCACTCCTTTTAAAAA	7233	False	NA	NA	False	NA	NA	NA	181247850	181248055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_181247800_181248100
PB_novel_26219_0	chr2	+	175	1	Intergenic	novelGene_9443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAAACAAAACA	506	False	NA	NA	False	NA	NA	NA	181288297	181288472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_181288300_181288500
PB_novel_26220_0	chr2	+	133	1	Intergenic	novelGene_9444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATTATTAAAAAAAA	512	False	NA	NA	False	NA	NA	NA	181293255	181293388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_181293300_181293400
PB_novel_26221_0	chr2	-	170	1	Intergenic	novelGene_9445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAATAGATTAATAG	6491	False	NA	NA	False	NA	NA	NA	181307822	181307652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_181307700_181307800
PB_novel_26223_0	chr2	+	175	1	Intergenic	novelGene_9446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	181341758	181341933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_+_181341800_181341900
PB_novel_26228_1	chr2	-	180	1	Intergenic	novelGene_9447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	181599768	181599588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_181599600_181599800
PB_novel_26231_0	chr3	-	172	1	Intergenic	novelGene_1448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	288	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	3102114	3101942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_3101900_3102100
PB_novel_26236_0	chr3	+	177	1	Intergenic	novelGene_1449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	6048486	6048663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_6048500_6048700
PB_novel_26238_0	chr3	-	179	1	Intergenic	novelGene_1450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAATA	NA	False	NA	NA	False	NA	NA	NA	6641472	6641293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_6641300_6641500
PB_novel_26246_0	chr3	-	108	1	Intergenic	novelGene_1451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAATAAAATAAAGG	NA	False	NA	NA	False	NA	NA	NA	8311308	8311200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_8311200_8311300
PB_novel_26247_0	chr3	-	167	1	Intergenic	novelGene_1452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	8425227	8425060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_8425100_8425200
PB_novel_26253_1	chr3	-	174	1	Intergenic	novelGene_1453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	9019844	9019670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_9019700_9019800
PB_novel_26260_0	chr3	+	174	1	Intergenic	novelGene_1454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACAATGAATTTAT	NA	False	NA	NA	False	NA	NA	NA	9110235	9110409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_9110200_9110400
PB_novel_26265_0	chr3	+	179	1	Intergenic	novelGene_1455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGATTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9214385	9214564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_9214400_9214600
PB_novel_26266_0	chr3	+	178	1	Intergenic	novelGene_1456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAGGGGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9229281	9229459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_9229300_9229500
PB_novel_26268_1	chr3	+	177	1	Intergenic	novelGene_1457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGACACTA	NA	False	NA	NA	False	NA	NA	NA	9278179	9278356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_9278200_9278400
PB_novel_26273_0	chr3	+	2046	1	Intergenic	novelGene_1458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9599271	9601317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_9599300_9601300
PB_novel_26275_0	chr3	-	4078	1	Intergenic	novelGene_1459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9628888	9624810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_9624800_9628900
PB_novel_26282_0	chr3	-	2684	1	Antisense	novelGene_ENSMUSG00000027533.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10082259	10079575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_10079600_10082300
PB_novel_26283_0	chr3	+	173	1	Intergenic	novelGene_1460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	10285390	10285563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_10285400_10285600
PB_novel_26287_0	chr3	+	255	1	Intergenic	novelGene_1461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-4	NA	10418044	10418299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_10418000_10418300
PB_novel_26288_0	chr3	-	2506	1	Intergenic	novelGene_1462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10445319	10442813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_10442800_10445300
PB_novel_26289_0	chr3	-	176	1	Intergenic	novelGene_1463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGATACAA	NA	False	NA	NA	False	NA	NA	NA	10449503	10449327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_10449300_10449500
PB_novel_26293_0	chr3	-	1663	1	Intergenic	novelGene_1464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	AATAAA	-13	NA	11080240	11078577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_11078600_11080200
PB_novel_26296_0	chr3	-	181	1	Intergenic	novelGene_1465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11284506	11284325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_11284300_11284500
PB_novel_26297_0	chr3	-	170	1	Intergenic	novelGene_1466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCTTAAAAAATAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	11875669	11875499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_11875500_11875700
PB_novel_26302_0	chr3	+	2875	1	NIC	ENSMUSG00000027550.15	novel	3359	19	NA	NA	-17	-14737	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-30	NA	14598921	14601796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_14598900_14601800
PB_novel_26306_0	chr3	-	2381	1	NIC	ENSMUSG00000078784.9	novel	435	4	NA	NA	3	313	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	14676311	14673930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_14673900_14676300
PB_novel_26307_1	chr3	-	218	1	Intergenic	novelGene_1467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAATAATTAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-16	NA	14685786	14685568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_14685600_14685800
PB_novel_26315_0	chr3	+	1319	2	Intergenic	novelGene_1468	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-20	NA	15685329	15686755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_15685511_15685617
PB_novel_26315_1	chr3	+	1416	1	Intergenic	novelGene_1469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-20	NA	15685339	15686755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_15685300_15686800
PB_novel_26326_0	chr3	-	176	1	Intergenic	novelGene_1470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8007	False	NA	NA	False	NA	NA	NA	19257095	19256919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_19256900_19257100
PB_novel_26330_0	chr3	+	2886	1	Intergenic	novelGene_1471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19346635	19349521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_19346600_19349500
PB_novel_26335_0	chr3	+	175	1	Intergenic	novelGene_1472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19798641	19798816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_19798600_19798800
PB_novel_26342_0	chr3	-	169	1	Intergenic	novelGene_1473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATATTAAAAAAAAAG	2039	False	NA	NA	False	NA	NA	NA	20130475	20130306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_20130300_20130500
PB_novel_26345_0	chr3	+	1316	1	Intergenic	novelGene_1474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACTGAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-9	NA	21107284	21108600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_21107300_21108600
PB_novel_26346_0	chr3	+	177	1	Intergenic	novelGene_1475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	21655383	21655560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_21655400_21655600
PB_novel_26347_0	chr3	+	173	1	Intergenic	novelGene_1476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	21820113	21820286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_21820100_21820300
PB_novel_26348_0	chr3	+	234	1	Intergenic	novelGene_1477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAATTAAATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21903813	21904047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_21903800_21904000
PB_novel_26349_0	chr3	+	154	1	Intergenic	novelGene_1478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAAATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	21976246	21976400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_21976200_21976400
PB_novel_26359_0	chr3	-	161	1	Intergenic	novelGene_1479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAACACTCATGG	NA	False	NA	NA	False	NA	NA	NA	22155942	22155781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_22155800_22155900
PB_novel_26360_0	chr3	-	4421	1	Antisense	novelGene_ENSMUSG00000027630.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22259324	22254903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_22254900_22259300
PB_novel_26363_0	chr3	+	158	1	Intergenic	novelGene_1480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAAAAAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	23080993	23081151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_23081000_23081200
PB_novel_26367_0	chr3	+	176	1	Intergenic	novelGene_1481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTGT	NA	False	NA	NA	False	NA	NA	NA	25461261	25461437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_25461300_25461400
PB_novel_26368_0	chr3	+	846	1	Intergenic	novelGene_1482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25785924	25786770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_25785900_25786800
PB_novel_26372_0	chr3	-	2083	1	Intergenic	novelGene_1483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGCAAAAAAAAAAAAAATTA	594	False	NA	NA	False	NA	NA	NA	27239976	27237893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_27237900_27240000
PB_novel_26390_0	chr3	+	176	1	Intergenic	novelGene_1484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	4731	False	NA	NA	False	NA	NA	NA	29158953	29159129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_29159000_29159100
PB_novel_26392_0	chr3	+	176	1	Intergenic	novelGene_1485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	30534360	30534536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_30534400_30534500
PB_novel_26402_0	chr3	-	2888	1	Antisense	novelGene_ENSMUSG00000037661.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30910432	30907544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_30907500_30910400
PB_novel_26404_0	chr3	+	3106	1	Genic_Genomic	ENSMUSG00000037661.15	novel	NA	NA	NA	NA	22786	2573	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30933077	30936183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_+_30933100_30936200
PB_novel_26408_0	chr3	-	2805	1	NIC	ENSMUSG00000037652.16	novel	3491	17	NA	NA	2	-8212	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	31023552	31020747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_31020700_31023600
PB_novel_26409_0	chr3	+	174	1	Intergenic	novelGene_1486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	31088785	31088959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_31088800_31089000
PB_novel_26411_0	chr3	-	134	1	Intergenic	novelGene_1487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31109079	31108945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_31108900_31109100
PB_novel_26412_0	chr3	-	169	1	Intergenic	novelGene_1488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	31110363	31110194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_31110200_31110400
PB_novel_26413_0	chr3	-	170	1	Intergenic	novelGene_1489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGTG	NA	False	NA	NA	False	NA	NA	NA	31111044	31110874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_31110900_31111000
PB_novel_26416_0	chr3	-	175	1	Intergenic	novelGene_1490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAGGAGATGAATT	NA	False	NA	NA	False	NA	NA	NA	31194786	31194611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_31194600_31194800
PB_novel_26417_2	chr3	-	174	1	Intergenic	novelGene_1491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	31196453	31196279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_31196300_31196500
PB_novel_26418_0	chr3	+	171	1	Intergenic	novelGene_1492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAGAAGTACAGC	NA	False	NA	NA	False	NA	NA	NA	31199577	31199748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_31199600_31199700
PB_novel_26422_0	chr3	+	175	1	Intergenic	novelGene_1493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATGATTC	NA	False	NA	NA	False	NA	NA	NA	32330440	32330615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_32330400_32330600
PB_novel_26432_1	chr3	-	146	1	Intergenic	novelGene_1494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATAAATCTTAAAA	4547	False	NA	NA	False	NA	NA	NA	32759519	32759373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_32759400_32759500
PB_novel_26436_0	chr3	-	4031	1	FSM	ENSMUSG00000037531.9	ENSMUST00000192021.2	1505	1	850	-3376	392	3376	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTCGAAAAACCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32790904	32786873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_32786900_32790900
PB_novel_26440_0	chr3	+	131	1	Intergenic	novelGene_1495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32892457	32892588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_32892500_32892600
PB_novel_26445_0	chr3	+	2500	1	Genic_Genomic	ENSMUSG00000027677.18	novel	NA	NA	NA	NA	11592	1771	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	33868280	33870780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_+_33868300_33870800
PB_novel_26452_0	chr3	-	162	1	Intergenic	novelGene_1496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34082116	34081954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_34082000_34082100
PB_novel_26456_0	chr3	-	675	1	Intergenic	novelGene_1497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34708415	34707740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_34707700_34708400
PB_novel_26460_0	chr3	-	164	1	Intergenic	novelGene_1498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAAAAAAAAG	384	False	NA	NA	False	NA	NA	NA	34761039	34760875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_34760900_34761000
PB_novel_26461_0	chr3	-	133	1	Intergenic	novelGene_1499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	34766467	34766334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_34766300_34766500
PB_novel_26464_0	chr3	-	179	1	Intergenic	novelGene_1500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	34818084	34817905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_34817900_34818100
PB_novel_26480_0	chr3	-	1515	1	Intergenic	novelGene_1501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGCCAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	35878250	35876735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_35876700_35878200
PB_novel_26499_0	chr3	-	170	1	Intergenic	novelGene_1502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	37445459	37445289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_37445300_37445500
PB_novel_26506_0	chr3	-	176	1	Intergenic	novelGene_1503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAGATTGG	NA	False	NA	NA	False	NA	NA	NA	38251839	38251663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_38251700_38251800
PB_novel_26512_0	chr3	+	185	1	Intergenic	novelGene_1504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAGATTTAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	40638602	40638787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_40638600_40638800
PB_novel_26522_0	chr3	+	177	1	Intergenic	novelGene_1505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAGAAATGTAAA	NA	False	NA	NA	False	NA	NA	NA	41170081	41170258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_41170100_41170300
PB_novel_26531_0	chr3	-	1078	1	NIC	ENSMUSG00000097639.3	novel	2161	2	NA	NA	16	-3293	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAACAAAAGAGAAAT	NA	False	NA	NA	False	NA	NA	NA	41447609	41446531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_41446500_41447600
PB_novel_26535_0	chr3	+	169	1	Intergenic	novelGene_1506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	41641697	41641866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_41641700_41641900
PB_novel_26549_0	chr3	+	176	1	Intergenic	novelGene_1507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAACACCTGTG	NA	False	NA	NA	False	NA	NA	NA	49395641	49395817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_49395600_49395800
PB_novel_26562_0	chr3	+	180	1	Intergenic	novelGene_1508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGCAGAG	NA	False	NA	NA	False	NA	NA	NA	51243629	51243809	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51243600_51243800
PB_novel_26563_7	chr3	+	174	1	Intergenic	novelGene_1509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	998	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	51251816	51251990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51251800_51252000
PB_novel_26565_0	chr3	+	127	1	Intergenic	novelGene_1510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51265168	51265295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51265200_51265300
PB_novel_26569_0	chr3	+	173	1	Intergenic	novelGene_1511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	316	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51287986	51288159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51288000_51288200
PB_novel_26570_0	chr3	+	151	1	Intergenic	novelGene_1512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGTAAATAAATAAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	51299949	51300100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51299900_51300100
PB_novel_26571_0	chr3	+	172	1	Intergenic	novelGene_1513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	51300652	51300824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51300700_51300800
PB_novel_26572_0	chr3	-	165	1	Intergenic	novelGene_1514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	51305016	51304851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_51304900_51305000
PB_novel_26577_0	chr3	-	2718	1	Intergenic	novelGene_1515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	5757	False	NA	NA	False	NA	NA	NA	51328531	51325813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_51325800_51328500
PB_novel_26580_0	chr3	+	154	1	Intergenic	novelGene_1516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGGAATG	NA	False	NA	NA	False	NA	NA	NA	51333219	51333373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51333200_51333400
PB_novel_26582_0	chr3	+	177	1	Intergenic	novelGene_1517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAACCTAAA	NA	False	NA	NA	False	NA	NA	NA	51337756	51337933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51337800_51337900
PB_novel_26585_0	chr3	-	188	1	Intergenic	novelGene_1518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCCACAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51347557	51347369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_51347400_51347600
PB_novel_26586_0	chr3	-	160	1	Antisense	novelGene_ENSMUSG00000063273.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	51348368	51348208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_51348200_51348400
PB_novel_26590_0	chr3	-	158	1	Intergenic	novelGene_1519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGATATAGTCTC	NA	False	NA	NA	False	NA	NA	NA	51477645	51477487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_51477500_51477600
PB_novel_26593_0	chr3	-	175	1	Intergenic	novelGene_1520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGATTCTGACTG	NA	False	NA	NA	False	NA	NA	NA	51486835	51486660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_51486700_51486800
PB_novel_26595_5	chr3	+	1103	4	Intergenic	novelGene_1522	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	11.5181016954473	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAACAAACAAAAATG	NA	False	NA	NA	False	NA	NA	NA	51509167	51533475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51509432_51532025_51532159_51532710_51533027_51533085
PB_novel_26595_7	chr3	+	972	4	Intergenic	novelGene_1521	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	12.5521135891752	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAACTAAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	51509166	51533465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51509310_51532025_51532159_51532710_51533027_51533085
PB_novel_26596_0	chr3	+	175	1	Intergenic	novelGene_1523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	51509820	51509995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51509800_51510000
PB_novel_26602_0	chr3	+	176	1	Intergenic	novelGene_1524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	51907323	51907499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_51907300_51907500
PB_novel_26609_0	chr3	-	178	1	Intergenic	novelGene_1525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAATTAGTAAACT	NA	False	NA	NA	False	NA	NA	NA	53084222	53084044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_53084000_53084200
PB_novel_26610_0	chr3	-	176	1	Intergenic	novelGene_1526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAGAGAAAAAGTTGG	NA	False	NA	NA	False	NA	NA	NA	53221630	53221454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_53221500_53221600
PB_novel_26615_0	chr3	-	227	1	Intergenic	novelGene_1527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	AAGAAA	-30	NA	53435475	53435248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_53435200_53435500
PB_novel_26617_0	chr3	-	178	1	Intergenic	novelGene_1528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATGCT	NA	False	NA	NA	False	NA	NA	NA	53667944	53667766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_53667800_53667900
PB_novel_26618_0	chr3	+	180	1	Intergenic	novelGene_1529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAGCATAAACAA	NA	False	NA	NA	False	NA	NA	NA	53739290	53739470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_53739300_53739500
PB_novel_26622_0	chr3	+	176	1	Intergenic	novelGene_1530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATGAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	54529736	54529912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_54529700_54529900
PB_novel_26649_0	chr3	-	3698	1	Antisense	novelGene_ENSMUSG00000083538.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57438666	57434968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_57435000_57438700
PB_novel_26658_0	chr3	-	170	1	Intergenic	novelGene_1531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	58352620	58352450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_58352400_58352600
PB_novel_26660_0	chr3	+	164	1	Intergenic	novelGene_1532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58383629	58383793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_58383600_58383800
PB_novel_26663_0	chr3	+	3508	1	FSM	ENSMUSG00000106553.2	ENSMUST00000199552.2	1192	1	-953	-1363	-953	1363	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58433397	58436905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_58433400_58436900
PB_novel_26665_0	chr3	+	266	1	Intergenic	novelGene_1533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58454288	58454554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_58454300_58454600
PB_novel_26667_0	chr3	-	176	1	Intergenic	novelGene_1534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAATTAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	58461061	58460885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_58460900_58461100
PB_novel_26670_1	chr3	-	1764	1	Antisense	novelGene_ENSMUSG00000075700.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58494701	58492937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_58492900_58494700
PB_novel_26683_0	chr3	-	176	1	Intergenic	novelGene_1535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	60162459	60162283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_60162300_60162500
PB_novel_26693_0	chr3	-	828	1	Antisense	novelGene_ENSMUSG00000036894.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACCACAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-28	NA	61274773	61273945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_61273900_61274800
PB_novel_26694_0	chr3	-	167	1	Intergenic	novelGene_1536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	61396675	61396508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_61396500_61396700
PB_novel_26698_0	chr3	-	1402	1	Intergenic	novelGene_1537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-40	NA	62353699	62352297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_62352300_62353700
PB_novel_26700_0	chr3	+	1660	1	Antisense	novelGene_ENSMUSG00000027770.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-44	NA	62385051	62386711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_62385100_62386700
PB_novel_26707_0	chr3	+	174	1	Intergenic	novelGene_1538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAGAAATAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	63169020	63169194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_63169000_63169200
PB_novel_26713_0	chr3	+	176	1	Intergenic	novelGene_1539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAACAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	63684001	63684177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_63684000_63684200
PB_novel_26725_0	chr3	+	361	1	Antisense	novelGene_ENSMUSG00000027828.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	65288457	65288818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_65288500_65288800
PB_novel_26728_0	chr3	+	4607	1	NIC	ENSMUSG00000034640.10	novel	4191	6	NA	NA	-10	-14541	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	65435870	65440477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_65435900_65440500
PB_novel_26731_0	chr3	+	1741	1	Intergenic	novelGene_1540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAGGAAGAAAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	65550777	65552518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_65550800_65552500
PB_novel_26734_0	chr3	-	175	1	Intergenic	novelGene_1541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGGAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	65601635	65601460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_65601500_65601600
PB_novel_26740_0	chr3	+	172	1	Intergenic	novelGene_1542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66635945	66636117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_66635900_66636100
PB_novel_26743_0	chr3	-	173	1	Intergenic	novelGene_1543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATTCAACACT	NA	False	NA	NA	False	NA	NA	NA	66906360	66906187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_66906200_66906400
PB_novel_26744_0	chr3	-	7578	1	Intergenic	novelGene_1544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-25	NA	67007412	66999834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_66999800_67007400
PB_novel_26749_0	chr3	+	154	1	Intergenic	novelGene_1545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAATAAAAATCTAAAA	8622	False	NA	NA	False	NA	NA	NA	67438764	67438918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_67438800_67438900
PB_novel_26751_0	chr3	+	177	1	Intergenic	novelGene_1546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGACAA	NA	False	NA	NA	False	NA	NA	NA	68280159	68280336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_68280200_68280300
PB_novel_26754_0	chr3	-	176	1	Intergenic	novelGene_1547	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATC	NA	False	NA	NA	False	NA	NA	NA	68394428	68394252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_68394300_68394400
PB_novel_26761_0	chr3	-	173	1	Intergenic	novelGene_1548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7085	False	NA	NA	False	NA	NA	NA	68754333	68754160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_68754200_68754300
PB_novel_26769_0	chr3	+	171	1	Intergenic	novelGene_1549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAGAGAGACCAG	NA	False	NA	NA	False	NA	NA	NA	68930244	68930415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_68930200_68930400
PB_novel_26771_0	chr3	+	170	1	Intergenic	novelGene_1550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAAAGAAAAGTTG	NA	False	NA	NA	False	NA	NA	NA	68938002	68938172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_68938000_68938200
PB_novel_26772_0	chr3	+	1697	2	Antisense	novelGene_ENSMUSG00000034317.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAACAAAACATAA	NA	False	NA	NA	False	NA	NA	NA	68945281	68947116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_68945492_68945629
PB_novel_26774_0	chr3	+	1679	1	Antisense	novelGene_ENSMUSG00000027782.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	68983217	68984896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_68983200_68984900
PB_novel_26782_0	chr3	-	175	1	Intergenic	novelGene_1551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69535503	69535328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_69535300_69535500
PB_novel_26795_0	chr3	-	188	1	Intergenic	novelGene_1552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAATGCCTGAG	NA	False	NA	NA	False	NA	NA	NA	70836157	70835969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_70836000_70836200
PB_novel_26796_0	chr3	+	178	1	Intergenic	novelGene_1553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAAATTCA	NA	False	NA	NA	False	NA	NA	NA	71896888	71897066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_71896900_71897100
PB_novel_26800_0	chr3	-	181	1	Intergenic	novelGene_1554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73469246	73469065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_73469100_73469200
PB_novel_26817_0	chr3	+	216	1	Intergenic	novelGene_1555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAACA	8603	False	NA	NA	False	NA	NA	NA	79170262	79170478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_79170300_79170500
PB_novel_26822_0	chr3	+	180	1	Intergenic	novelGene_1556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAGTA	NA	False	NA	NA	False	NA	NA	NA	79320221	79320401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_79320200_79320400
PB_novel_26826_0	chr3	+	2890	1	Antisense	novelGene_ENSMUSG00000061175.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79407743	79410633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_79407700_79410600
PB_novel_26838_0	chr3	-	172	1	Intergenic	novelGene_1557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAAGCTTGCA	9852	False	NA	NA	False	NA	NA	NA	79516108	79515936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_79515900_79516100
PB_novel_26842_0	chr3	-	163	1	Intergenic	novelGene_1558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAATAAATCTAAAAAAAA	9700	False	NA	NA	False	NA	NA	NA	79558428	79558265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_79558300_79558400
PB_novel_26845_0	chr3	+	175	1	Intergenic	novelGene_1559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	80406249	80406424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_80406200_80406400
PB_novel_26847_0	chr3	-	170	1	Intergenic	novelGene_1560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	81023527	81023357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_81023400_81023500
PB_novel_26849_0	chr3	+	161	1	Intergenic	novelGene_1561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATCTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81736744	81736905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_81736700_81736900
PB_novel_26855_1	chr3	+	174	1	Intergenic	novelGene_1562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83737590	83737764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_83737600_83737800
PB_novel_26856_0	chr3	+	176	1	Intergenic	novelGene_1563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83739892	83740068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_83739900_83740100
PB_novel_26858_0	chr3	+	165	1	Intergenic	novelGene_1564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAATCTTA	4454	False	NA	NA	False	NA	NA	NA	83778307	83778472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_83778300_83778500
PB_novel_26860_0	chr3	-	176	1	Intergenic	novelGene_1565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAATATAGT	NA	False	NA	NA	False	NA	NA	NA	83906146	83905970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_83906000_83906100
PB_novel_26863_0	chr3	+	4076	1	Intergenic	novelGene_1566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84057571	84061647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_84057600_84061600
PB_novel_26874_1	chr3	-	177	1	Intergenic	novelGene_1567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	84496770	84496593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_84496600_84496800
PB_novel_26882_0	chr3	+	116	1	Intergenic	novelGene_1568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAAAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	85844720	85844836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_85844700_85844800
PB_novel_26883_0	chr3	+	1270	1	NIC	ENSMUSG00000028082.15	novel	7217	21	NA	NA	14	-154572	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAGCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85878429	85879699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_85878400_85879700
PB_novel_26885_0	chr3	-	198	1	Intergenic	novelGene_1569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAACAAAAACAAAAACC	3258	False	NA	NA	False	NA	NA	NA	85884227	85884029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_85884000_85884200
PB_novel_26886_0	chr3	+	177	1	Intergenic	novelGene_1570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	85903211	85903388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_85903200_85903400
PB_novel_26888_0	chr3	-	160	1	Intergenic	novelGene_1571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAGAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	85947606	85947446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_85947400_85947600
PB_novel_26891_0	chr3	+	177	1	Intergenic	novelGene_1572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	357	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7339	False	NA	NA	False	NA	NA	NA	86024577	86024754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_86024600_86024800
PB_novel_26897_0	chr3	-	175	1	Intergenic	novelGene_1573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACAGGT	NA	False	NA	NA	False	NA	NA	NA	86085751	86085576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_86085600_86085800
PB_novel_26899_0	chr3	+	145	1	Intergenic	novelGene_1574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAATAAAAAAAAAAAAT	4619	False	NA	NA	False	NA	NA	NA	86108827	86108972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_86108800_86109000
PB_novel_26901_0	chr3	-	175	1	Intergenic	novelGene_1575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAATTTTTAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	86124153	86123978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_86124000_86124200
PB_novel_26902_0	chr3	-	168	1	Intergenic	novelGene_1576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	86128685	86128517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_86128500_86128700
PB_novel_26903_0	chr3	-	173	1	Intergenic	novelGene_1577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	86128891	86128718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_86128700_86128900
PB_novel_26905_0	chr3	-	170	1	Intergenic	novelGene_1578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	86174674	86174504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_86174500_86174700
PB_novel_26908_0	chr3	+	181	1	Intergenic	novelGene_1579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAGCA	4718	False	NA	NA	False	NA	NA	NA	86229409	86229590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_86229400_86229600
PB_novel_26912_0	chr3	-	157	1	Intergenic	novelGene_1580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	86571462	86571305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_86571300_86571500
PB_novel_26913_0	chr3	-	424	1	FSM	ENSMUSG00000094392.2	ENSMUST00000119949.3	136	1	-23	-265	-23	265	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	86579498	86579074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_86579100_86579500
PB_novel_26917_0	chr3	-	173	1	Intergenic	novelGene_1581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	86747922	86747749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_86747700_86747900
PB_novel_26922_0	chr3	+	132	1	Intergenic	novelGene_1582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAACACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	86831493	86831625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_86831500_86831600
PB_novel_26925_0	chr3	-	173	1	Intergenic	novelGene_1583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAATGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	86947258	86947085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_86947100_86947300
PB_novel_26927_0	chr3	-	162	1	Intergenic	novelGene_1584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87096007	87095845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_87095800_87096000
PB_novel_26929_0	chr3	-	171	1	Intergenic	novelGene_1585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAAGCT	4020	False	NA	NA	False	NA	NA	NA	87108446	87108275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_87108300_87108400
PB_novel_26937_0	chr3	+	145	1	Intergenic	novelGene_1586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	87565902	87566047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_87565900_87566000
PB_novel_26940_2	chr3	+	180	1	Intergenic	novelGene_1587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87789286	87789466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_87789300_87789500
PB_novel_26941_0	chr3	+	161	1	Intergenic	novelGene_1588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	87789502	87789663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_87789500_87789700
PB_novel_26943_0	chr3	-	187	1	Intergenic	novelGene_1589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	87807827	87807640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_87807600_87807800
PB_novel_26944_0	chr3	-	176	1	Intergenic	novelGene_1590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACATTA	4284	False	NA	NA	False	NA	NA	NA	87828031	87827855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_87827900_87828000
PB_novel_26945_0	chr3	-	191	1	Intergenic	novelGene_1591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAACCCT	8508	False	NA	NA	False	NA	NA	NA	87840607	87840416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_87840400_87840600
PB_novel_26947_0	chr3	+	160	1	Intergenic	novelGene_1592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6753	False	NA	NA	False	NA	NA	NA	87864761	87864921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_87864800_87864900
PB_novel_26953_0	chr3	+	152	1	Intergenic	novelGene_1593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAAATAAATAAAAT	9742	False	NA	NA	False	NA	NA	NA	87986953	87987105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_87987000_87987100
PB_novel_26959_0	chr3	+	171	1	Intergenic	novelGene_1594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGCCTTTAAA	933	False	NA	NA	False	NA	NA	NA	88044073	88044244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_88044100_88044200
PB_novel_26962_0	chr3	-	175	1	Intergenic	novelGene_1595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATCAATATAA	NA	False	NA	NA	False	NA	NA	NA	88061568	88061393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88061400_88061600
PB_novel_26965_0	chr3	-	180	1	Intergenic	novelGene_1596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTGT	NA	False	NA	NA	False	NA	NA	NA	88167423	88167243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88167200_88167400
PB_novel_26967_0	chr3	+	168	1	Intergenic	novelGene_1597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAATAAAATATTTTTAT	9060	False	NA	NA	False	NA	NA	NA	88179390	88179558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_88179400_88179600
PB_novel_26968_0	chr3	-	177	1	Intergenic	novelGene_1598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAGAAAGATAGA	NA	False	NA	NA	False	NA	NA	NA	88180156	88179979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88180000_88180200
PB_novel_26971_0	chr3	+	176	1	Intergenic	novelGene_1599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88186376	88186552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_88186400_88186600
PB_novel_26976_0	chr3	-	162	1	Intergenic	novelGene_1600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATCTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88200761	88200599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88200600_88200800
PB_novel_26991_0	chr3	+	173	1	Intergenic	novelGene_1601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTTTAAAAACAAAACAAA	NA	False	NA	1	True	NA	NA	NA	88395165	88395338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_88395200_88395300
PB_novel_27005_1	chr3	-	174	1	Intergenic	novelGene_1602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAATAACTG	9413	False	NA	NA	False	NA	NA	NA	88489190	88489016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88489000_88489200
PB_novel_27007_2	chr3	-	174	1	Intergenic	novelGene_1603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAGACAAAAACAAAA	1995	False	NA	NA	False	NA	NA	NA	88510617	88510443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88510400_88510600
PB_novel_27011_0	chr3	-	181	1	Intergenic	novelGene_1604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACTAGCA	NA	False	NA	NA	False	NA	NA	NA	88535561	88535380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88535400_88535600
PB_novel_27014_0	chr3	-	210	1	Intergenic	novelGene_1605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	8547	False	NA	NA	False	NA	NA	NA	88545905	88545695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88545700_88545900
PB_novel_27016_0	chr3	-	169	1	Intergenic	novelGene_1606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	88586694	88586525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88586500_88586700
PB_novel_27017_0	chr3	-	175	2	Intergenic	novelGene_1607	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	336	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATTAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	88590135	88589706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88589748_88590001
PB_novel_27017_2	chr3	-	176	1	Intergenic	novelGene_1609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88590135	88589959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88590000_88590100
PB_novel_27019_0	chr3	-	174	1	Intergenic	novelGene_1608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCTTAAAAAAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88589885	88589711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88589700_88589900
PB_novel_27022_0	chr3	-	177	1	Intergenic	novelGene_1610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAACAAAAAAAAA	7673	False	NA	NA	False	NA	NA	NA	88599661	88599484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88599500_88599700
PB_novel_27023_0	chr3	-	170	1	Intergenic	novelGene_1611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	4495	False	NA	NA	False	NA	NA	NA	88602839	88602669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88602700_88602800
PB_novel_27026_1	chr3	-	177	1	Intergenic	novelGene_1612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACAAAAAACACT	NA	False	NA	NA	False	NA	NA	NA	88623188	88623011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88623000_88623200
PB_novel_27026_5	chr3	-	177	1	Intergenic	novelGene_1614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	8669	False	NA	NA	False	NA	NA	NA	88747296	88747119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88747100_88747300
PB_novel_27027_0	chr3	+	167	1	Intergenic	novelGene_1613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAAAAATT	1481	False	NA	NA	False	NA	NA	NA	88623408	88623575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_88623400_88623600
PB_novel_27043_1	chr3	-	166	1	Intergenic	novelGene_1616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88779031	88778865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88778900_88779000
PB_novel_27044_0	chr3	+	184	1	Intergenic	novelGene_1615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAACCAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	88756097	88756281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_88756100_88756300
PB_novel_27051_0	chr3	-	179	1	Intergenic	novelGene_1617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGTATTTTAAATGAT	NA	False	NA	NA	False	NA	NA	NA	88854246	88854067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88854100_88854200
PB_novel_27053_0	chr3	-	185	1	Intergenic	novelGene_1618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	88870679	88870494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_88870500_88870700
PB_novel_27062_0	chr3	+	174	1	Intergenic	novelGene_1619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAGAAAAAGAAATA	NA	False	NA	NA	False	NA	NA	NA	89025989	89026163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_89026000_89026200
PB_novel_27065_0	chr3	-	169	1	Intergenic	novelGene_1620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	89063125	89062956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_89063000_89063100
PB_novel_27070_0	chr3	-	160	1	Intergenic	novelGene_1621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	89109915	89109755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_89109800_89109900
PB_novel_27072_0	chr3	-	171	1	Intergenic	novelGene_1622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89128245	89128074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_89128100_89128200
PB_novel_27077_0	chr3	+	177	1	Intergenic	novelGene_1623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	1699	False	NA	NA	False	NA	NA	NA	89304591	89304768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_89304600_89304800
PB_novel_27078_0	chr3	+	1805	1	Antisense	novelGene_ENSMUSG00000042642.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGTCTTGAAAAACCAAAAA	9229	False	NA	NA	False	NA	NA	NA	89312121	89313926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_89312100_89313900
PB_novel_27080_0	chr3	-	2588	1	Antisense	novelGene_ENSMUSG00000042626.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCGAAAACCAAAAAAAAAAA	9878	False	NA	NA	False	NA	NA	NA	89330284	89327696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_89327700_89330300
PB_novel_27085_0	chr3	+	177	1	Intergenic	novelGene_1624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6057	False	NA	NA	False	NA	NA	NA	89373676	89373853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_89373700_89373900
PB_novel_27087_0	chr3	+	181	1	Intergenic	novelGene_1625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATCTTTTTAAAAAAAAA	965	False	NA	NA	False	NA	NA	NA	89390296	89390477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_89390300_89390500
PB_novel_27089_0	chr3	+	158	1	Intergenic	novelGene_1626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATATTAA	9374	False	NA	NA	False	NA	NA	NA	89405089	89405247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_89405100_89405200
PB_novel_27095_0	chr3	+	250	1	Intergenic	novelGene_1627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAGGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	89700903	89701153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_89700900_89701200
PB_novel_27099_3	chr3	+	176	1	Intergenic	novelGene_1628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATCATACACATAAG	NA	False	NA	NA	False	NA	NA	NA	89749823	89749999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_89749800_89750000
PB_novel_27102_0	chr3	+	173	1	Intergenic	novelGene_1629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAAGGCC	9567	False	NA	NA	False	NA	NA	NA	89791861	89792034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_89791900_89792000
PB_novel_27104_0	chr3	+	167	1	Intergenic	novelGene_1630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATCTTAATAAAAAAAA	1566	False	NA	NA	False	NA	NA	NA	89800924	89801091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_89800900_89801100
PB_novel_27106_0	chr3	+	159	1	Intergenic	novelGene_1631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATTAATTAATA	8368	False	NA	NA	False	NA	NA	NA	89807726	89807885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_89807700_89807900
PB_novel_27112_1	chr3	-	181	1	Intergenic	novelGene_1632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATCTTAAAAAAAAAAA	5305	False	NA	NA	False	NA	NA	NA	89886167	89885986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_89886000_89886200
PB_novel_27116_0	chr3	-	253	1	Intergenic	novelGene_1633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGAGTTTTG	5809	False	NA	NA	False	NA	NA	NA	89898703	89898450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_89898400_89898700
PB_novel_27117_0	chr3	-	2273	1	Genic_Genomic	ENSMUSG00000027944.14	novel	NA	NA	NA	NA	405	2170	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	1657	False	NA	NA	False	NA	NA	NA	89902855	89900582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_-_89900600_89902900
PB_novel_27119_6	chr3	+	4094	2	Antisense	novelGene_ENSMUSG00000098397.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAATTAGAAAAAAA	1372	False	NA	NA	False	AGTAAA	-22	NA	89914267	89919109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_89915666_89916413
PB_novel_27122_0	chr3	+	174	1	Antisense	novelGene_ENSMUSG00000042520.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	89944069	89944243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_89944100_89944200
PB_novel_27131_7	chr3	-	4176	2	Antisense	novelGene_ENSMUSG00000027940.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	165	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9570	False	NA	NA	False	NA	NA	NA	89999727	89995401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_89997165_89997314
PB_novel_27131_9	chr3	-	2856	3	Antisense	novelGene_ENSMUSG00000027940.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9570	False	NA	NA	False	NA	NA	NA	89999727	89995401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_89995782_89997101_89997165_89997314
PB_novel_27132_0	chr3	-	286	1	Antisense	novelGene_ENSMUSG00000027940.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6590	False	NA	NA	False	NA	NA	NA	89995687	89995401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_89995400_89995700
PB_novel_27133_0	chr3	-	160	1	Intergenic	novelGene_1634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAATCAAAAAAAA	8683	False	NA	NA	False	NA	NA	NA	90000614	90000454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_90000500_90000600
PB_novel_27137_0	chr3	-	175	1	Intergenic	novelGene_1635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90062648	90062473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_90062500_90062600
PB_novel_27138_0	chr3	-	196	1	Intergenic	novelGene_1636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	90074780	90074584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_90074600_90074800
PB_novel_27148_0	chr3	-	171	1	Intergenic	novelGene_1637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAACAAAACAGC	NA	False	NA	NA	False	NA	NA	NA	90193954	90193783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_90193800_90194000
PB_novel_27151_0	chr3	-	173	1	Intergenic	novelGene_1638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATAAATCTTTTTAA	1107	False	NA	NA	False	NA	NA	NA	90212546	90212373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_90212400_90212500
PB_novel_27153_0	chr3	-	177	1	Intergenic	novelGene_1639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATTAAATTAAAT	NA	False	NA	NA	False	NA	NA	NA	90215215	90215038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_90215000_90215200
PB_novel_27159_0	chr3	-	171	1	Intergenic	novelGene_1640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAAGAAATTCA	3017	False	NA	NA	False	NA	NA	NA	90263378	90263207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_90263200_90263400
PB_novel_27167_0	chr3	+	130	1	Intergenic	novelGene_1641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90350351	90350481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_90350400_90350500
PB_novel_27172_0	chr3	+	2017	1	Genic_Genomic	ENSMUSG00000087411.2	novel	NA	NA	NA	NA	4195	699	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGTAAGACAGGAT	3452	False	NA	NA	False	NA	NA	NA	90363084	90365101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_+_90363100_90365100
PB_novel_27173_0	chr3	-	134	1	Intergenic	novelGene_1642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACCAAAAAAAAAA	9454	False	NA	NA	False	NA	NA	NA	90380515	90380381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_90380400_90380500
PB_novel_27174_0	chr3	+	163	1	Intergenic	novelGene_1643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	90381901	90382064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_90381900_90382100
PB_novel_27175_0	chr3	+	163	1	Intergenic	novelGene_1644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90382632	90382795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_90382600_90382800
PB_novel_27176_0	chr3	-	172	1	Antisense	novelGene_ENSMUSG00000001016.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTTCA	NA	False	NA	NA	False	NA	NA	NA	90390578	90390406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_90390400_90390600
PB_novel_27177_0	chr3	+	2797	1	Antisense	novelGene_ENSMUSG00000001017.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90413240	90416037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_90413200_90416000
PB_novel_27180_0	chr3	+	174	1	Intergenic	novelGene_1645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACCAAAAAC	NA	False	NA	NA	False	NA	NA	NA	90418823	90418997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_90418800_90419000
PB_novel_27184_0	chr3	+	209	1	Intergenic	novelGene_1646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91870049	91870258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_91870000_91870300
PB_novel_27188_0	chr3	+	1869	1	FSM	ENSMUSG00000091421.4	ENSMUST00000169025.4	733	1	-120	-1016	-120	1016	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAGAAAATG	NA	False	NA	NA	False	NA	NA	NA	92596612	92598481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_92596600_92598500
PB_novel_27192_0	chr3	+	1027	1	Intergenic	novelGene_1647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAATTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93307597	93308624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_93307600_93308600
PB_novel_27197_0	chr3	-	175	1	Intergenic	novelGene_1648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATAAAAAAAGAAATGTC	NA	False	NA	NA	False	NA	NA	NA	93487912	93487737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_93487700_93487900
PB_novel_27205_0	chr3	+	180	1	Intergenic	novelGene_1649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	93869019	93869199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_93869000_93869200
PB_novel_27206_0	chr3	+	180	1	Intergenic	novelGene_1650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	93980349	93980529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_93980300_93980500
PB_novel_27209_0	chr3	+	175	1	Intergenic	novelGene_1651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAACAAAAAAAAATACAT	5384	False	NA	NA	False	NA	NA	NA	94448714	94448889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_94448700_94448900
PB_novel_27218_0	chr3	+	161	1	Intergenic	novelGene_1652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	94651141	94651302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_94651100_94651300
PB_novel_27224_0	chr3	-	148	1	Intergenic	novelGene_1653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATAAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	94730255	94730107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_94730100_94730300
PB_novel_27226_1	chr3	-	177	1	Intergenic	novelGene_1655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAATTCAAATGCA	NA	False	NA	NA	False	NA	NA	NA	94809360	94809183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_94809200_94809400
PB_novel_27227_0	chr3	-	144	1	Intergenic	novelGene_1654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATACATCCATAGA	NA	False	NA	NA	False	NA	NA	NA	94747038	94746894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_94746900_94747000
PB_novel_27231_0	chr3	-	176	1	Intergenic	novelGene_1657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAATACAACAATAAC	7799	False	NA	-1	True	NA	NA	NA	94830548	94830372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_94830400_94830500
PB_novel_27234_0	chr3	-	174	1	Intergenic	novelGene_1656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTCA	NA	False	NA	NA	False	NA	NA	NA	94820044	94819870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_94819900_94820000
PB_novel_27241_0	chr3	+	175	1	Intergenic	novelGene_1658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	94879601	94879776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_94879600_94879800
PB_novel_27242_0	chr3	+	4968	1	NIC	ENSMUSG00000038861.15	novel	3692	11	NA	NA	53	-16048	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	94882239	94887207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_94882200_94887200
PB_novel_27246_0	chr3	-	176	1	Intergenic	novelGene_1665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTGT	8524	False	NA	NA	False	NA	NA	NA	95028193	95028017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_95028000_95028200
PB_novel_27247_0	chr3	+	172	1	Intergenic	novelGene_1659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6378	False	NA	NA	False	NA	NA	NA	94939482	94939654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_94939500_94939700
PB_novel_27249_0	chr3	+	174	1	Intergenic	novelGene_1660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATACATCTTTAAAAA	8253	False	NA	NA	False	NA	NA	NA	94941357	94941531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_94941400_94941500
PB_novel_27252_0	chr3	+	273	1	Intergenic	novelGene_1661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTGTCTCGAAAAACAAAAA	5632	False	NA	NA	False	NA	NA	NA	94959801	94960074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_94959800_94960100
PB_novel_27253_0	chr3	+	170	1	Intergenic	novelGene_1662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAGAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	94968709	94968879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_94968700_94968900
PB_novel_27254_0	chr3	-	167	1	Intergenic	novelGene_1663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94984133	94983966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_94984000_94984100
PB_novel_27260_1	chr3	-	177	1	Intergenic	novelGene_1664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACT	372	False	NA	NA	False	NA	NA	NA	95015067	95014890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_95014900_95015100
PB_novel_27263_0	chr3	-	172	1	Antisense	novelGene_ENSMUSG00000008958.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	1347	False	NA	NA	False	NA	NA	NA	95024009	95023837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_95023800_95024000
PB_novel_27265_0	chr3	+	146	1	Antisense	novelGene_ENSMUSG00000092607.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	5191	False	NA	NA	False	NA	NA	NA	95037978	95038124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_95038000_95038100
PB_novel_27269_0	chr3	-	176	1	Intergenic	novelGene_1666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAATAGAT	NA	False	NA	NA	False	NA	NA	NA	95083648	95083472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_95083500_95083600
PB_novel_27273_0	chr3	-	169	1	Intergenic	novelGene_1667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95120651	95120482	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_95120500_95120700
PB_novel_27286_0	chr3	-	156	1	Intergenic	novelGene_1668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATAATTAATTAA	1637	False	NA	NA	False	NA	NA	NA	95239533	95239377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_95239400_95239500
PB_novel_27287_0	chr3	-	166	1	Intergenic	novelGene_1669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	95255938	95255772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_95255800_95255900
PB_novel_27288_0	chr3	+	174	1	Intergenic	novelGene_1670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	95259145	95259319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95259100_95259300
PB_novel_27290_1	chr3	+	181	1	Intergenic	novelGene_1671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAACAAAAAA	4950	False	NA	NA	False	NA	NA	NA	95292597	95292778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95292600_95292800
PB_novel_27292_2	chr3	-	176	1	Intergenic	novelGene_1672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	4618	False	NA	NA	False	NA	NA	NA	95352612	95352436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_95352400_95352600
PB_novel_27295_0	chr3	-	177	1	Intergenic	novelGene_1673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAACTATTCCTA	2374	False	NA	NA	False	NA	NA	NA	95400449	95400272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_95400300_95400400
PB_novel_27296_0	chr3	+	170	1	Intergenic	novelGene_1674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	95464443	95464613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95464400_95464600
PB_novel_27299_0	chr3	-	171	1	Intergenic	novelGene_1675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTAAAAAAAAAAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	95495378	95495207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_95495200_95495400
PB_novel_27310_0	chr3	+	177	1	Intergenic	novelGene_1676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTTAAAAAAAAAAAAAAG	738	False	NA	NA	False	NA	NA	NA	95555215	95555392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95555200_95555400
PB_novel_27326_3	chr3	+	176	1	Intergenic	novelGene_1677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95730869	95731045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95730900_95731000
PB_novel_27327_0	chr3	+	121	1	Intergenic	novelGene_1678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAACAAAAACCAA	32	False	NA	NA	False	NA	NA	NA	95735954	95736075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95736000_95736100
PB_novel_27330_0	chr3	-	176	1	Intergenic	novelGene_1679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGTAAAAA	2586	False	NA	NA	False	NA	NA	NA	95759297	95759121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_95759100_95759300
PB_novel_27333_1	chr3	+	178	1	Intergenic	novelGene_1680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	304	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAATAATAATGA	NA	False	NA	NA	False	NA	NA	NA	95781325	95781503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95781300_95781500
PB_novel_27336_0	chr3	+	180	1	Intergenic	novelGene_1681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	95785610	95785790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95785600_95785800
PB_novel_27341_0	chr3	+	175	1	Intergenic	novelGene_1682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAACAAAAAG	1985	False	NA	NA	False	NA	NA	NA	95821305	95821480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95821300_95821500
PB_novel_27342_0	chr3	+	172	1	Intergenic	novelGene_1683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	95832229	95832401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95832200_95832400
PB_novel_27343_0	chr3	+	2869	1	NIC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	10	-5000	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATCTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95836604	95839473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_95836600_95839500
PB_novel_27344_0	chr3	+	176	1	Intergenic	novelGene_1684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	95842945	95843121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95842900_95843100
PB_novel_27348_0	chr3	+	167	1	Intergenic	novelGene_1685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAATCTTTAAAAAAAAAA	2062	False	NA	NA	False	NA	NA	NA	95984874	95985041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_95984900_95985000
PB_novel_27355_0	chr3	+	167	1	Intergenic	novelGene_1686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAGAAAAGA	2840	False	NA	NA	False	NA	NA	NA	96198272	96198439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_96198300_96198400
PB_novel_27358_0	chr3	+	177	1	Intergenic	novelGene_1687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1438	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9070	False	NA	NA	False	NA	NA	NA	96230231	96230408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_96230200_96230400
PB_novel_27366_0	chr3	-	2872	1	FSM	ENSMUSG00000095836.4	ENSMUST00000181924.2	452	1	-1472	-948	-1472	948	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAATAAATAGTTG	NA	False	NA	NA	False	NA	NA	NA	96322149	96319277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_96319300_96322100
PB_novel_27373_0	chr3	+	204	1	Intergenic	novelGene_1688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAGAAAAAGA	9470	False	NA	NA	False	NA	NA	NA	96498195	96498399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_96498200_96498400
PB_novel_27379_0	chr3	-	174	1	Intergenic	novelGene_1689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAAAAAAGCA	9468	False	NA	NA	False	NA	NA	NA	96584684	96584510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_96584500_96584700
PB_novel_27380_0	chr3	+	173	1	Intergenic	novelGene_1690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACTTAATAG	NA	False	NA	NA	False	NA	NA	NA	96593602	96593775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_96593600_96593800
PB_novel_27387_0	chr3	-	2939	1	FSM	ENSMUSG00000104795.2	ENSMUST00000197075.2	795	1	-2144	0	-2144	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96634780	96631841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_-_96631800_96634800
PB_novel_27388_0	chr3	-	176	1	Intergenic	novelGene_1691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	96655605	96655429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_96655400_96655600
PB_novel_27390_0	chr3	-	175	1	Intergenic	novelGene_1692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAAGTATTCCAC	NA	False	NA	NA	False	NA	NA	NA	96690910	96690735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_96690700_96690900
PB_novel_27394_0	chr3	-	2843	1	NIC	ENSMUSG00000028096.14	novel	4598	14	NA	NA	-3	-19954	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	1894	False	NA	NA	False	NA	NA	NA	96812631	96809788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_96809800_96812600
PB_novel_27396_0	chr3	-	177	1	Intergenic	novelGene_1693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	96849300	96849123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_96849100_96849300
PB_novel_27397_0	chr3	-	175	1	Intergenic	novelGene_1694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATATATATGAAGT	NA	False	NA	NA	False	NA	NA	NA	96892432	96892257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_96892300_96892400
PB_novel_27399_0	chr3	+	177	1	Intergenic	novelGene_1695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96993272	96993449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_96993300_96993400
PB_novel_27406_0	chr3	+	267	1	Intergenic	novelGene_1696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97501743	97502010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_97501700_97502000
PB_novel_27408_0	chr3	+	4967	1	NIC	ENSMUSG00000038205.13	novel	1878	7	NA	NA	115	-7504	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97565644	97570611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_+_97565600_97570600
PB_novel_27410_0	chr3	-	130	1	Intergenic	novelGene_1697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	3095	False	NA	NA	False	NA	NA	NA	97776169	97776039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_97776000_97776200
PB_novel_27416_0	chr3	-	174	1	Intergenic	novelGene_1698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	97878230	97878056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_97878100_97878200
PB_novel_27418_0	chr3	+	177	1	Intergenic	novelGene_1699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGCAAGAAAG	7227	False	NA	NA	False	NA	NA	NA	97908451	97908628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_97908500_97908600
PB_novel_27423_0	chr3	-	169	1	Intergenic	novelGene_1700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAGCATTTGTAATTA	NA	False	NA	NA	False	NA	NA	NA	98147690	98147521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_98147500_98147700
PB_novel_27429_0	chr3	-	231	1	Intergenic	novelGene_1701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCCCCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98993476	98993245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_98993200_98993500
PB_novel_27437_0	chr3	+	176	1	Intergenic	novelGene_1702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	100066099	100066275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_100066100_100066300
PB_novel_27443_0	chr3	+	171	1	Intergenic	novelGene_1703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAATAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	100575623	100575794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_100575600_100575800
PB_novel_27446_0	chr3	+	176	1	Intergenic	novelGene_1705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	100754600	100754776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_100754600_100754800
PB_novel_27447_0	chr3	+	177	1	Intergenic	novelGene_1706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAAGAAGAAGAA	1753	False	NA	NA	False	NA	NA	NA	100787493	100787670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_100787500_100787700
PB_novel_27450_0	chr3	+	3510	1	Intergenic	novelGene_1707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101010158	101013668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_101010200_101013700
PB_novel_27457_0	chr3	+	158	1	Intergenic	novelGene_1708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	101472994	101473152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_101473000_101473200
PB_novel_27461_0	chr3	+	176	1	Intergenic	novelGene_1709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5256	False	NA	NA	False	NA	NA	NA	102017758	102017934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_102017800_102017900
PB_novel_27464_0	chr3	-	2564	1	Intergenic	novelGene_1710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAGAGAAAACA	NA	False	NA	NA	False	NA	NA	NA	102060370	102057806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_102057800_102060400
PB_novel_27473_0	chr3	+	175	1	Intergenic	novelGene_1711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAGCCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102908741	102908916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_102908700_102908900
PB_novel_27474_0	chr3	-	3297	18	Antisense	novelGene_ENSMUSG00000068823.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.470588235294118	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	102965149	102936434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_102936527_102946005_102946205_102947246_102947357_102948458_102948559_102950472_102950553_102950870_102951002_102951121_102951245_102951941_102952157_102954099_102954242_102954329_102954493_102956934_102957043_102957611_102957784_102958349_102958467_102960125_102960246_102961968_102962147_102962661_102962826_102963658_102963793_102964200
PB_novel_27475_0	chr3	-	177	1	Intergenic	novelGene_1712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	315	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102953789	102953612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_102953600_102953800
PB_novel_27479_0	chr3	-	224	1	Intergenic	novelGene_1713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTGTTTAAAATAATAATAA	NA	False	NA	NA	False	NA	NA	NA	102994140	102993916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_102993900_102994100
PB_novel_27484_0	chr3	-	2291	1	Intergenic	novelGene_1714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9074	False	NA	NA	False	ATTAAA	-35	NA	103030940	103028649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_103028600_103030900
PB_novel_27487_0	chr3	-	177	1	Intergenic	novelGene_1715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAATAAAGAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	103092081	103091904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_103091900_103092100
PB_novel_27489_0	chr3	+	172	1	Intergenic	novelGene_1716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATTAAAAAAAAAAT	6614	False	NA	NA	False	NA	NA	NA	103096849	103097021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_103096800_103097000
PB_novel_27490_0	chr3	+	175	1	Intergenic	novelGene_1717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAAGAAAG	7219	False	NA	NA	False	NA	NA	NA	103097454	103097629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_103097500_103097600
PB_novel_27492_0	chr3	-	177	1	Intergenic	novelGene_1718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGGAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	103142741	103142564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_103142600_103142700
PB_novel_27495_0	chr3	-	176	1	Intergenic	novelGene_1719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATACATACAG	NA	False	NA	NA	False	NA	NA	NA	103181504	103181328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_103181300_103181500
PB_novel_27505_0	chr3	+	172	1	Intergenic	novelGene_1720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGTAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	103306314	103306486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_103306300_103306500
PB_novel_27508_0	chr3	-	176	1	Intergenic	novelGene_1721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	103723265	103723089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_103723100_103723300
PB_novel_27513_0	chr3	+	1663	1	Intergenic	novelGene_1722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7693	False	NA	NA	False	NA	NA	NA	103976338	103978001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_103976300_103978000
PB_novel_27526_0	chr3	-	181	1	Intergenic	novelGene_1723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAATTTTTAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	104543557	104543376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_104543400_104543600
PB_novel_27533_0	chr3	-	181	1	Intergenic	novelGene_1724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	104729827	104729646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_104729600_104729800
PB_novel_27536_0	chr3	-	176	1	Intergenic	novelGene_1725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	6553	False	NA	NA	False	NA	NA	NA	104774441	104774265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_104774300_104774400
PB_novel_27537_0	chr3	-	4744	1	Antisense	novelGene_ENSMUSG00000045576.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACTAAAAACATAAT	3808	False	NA	NA	False	NA	NA	NA	104790649	104785905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_104785900_104790600
PB_novel_27544_0	chr3	+	164	1	Intergenic	novelGene_1726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATCTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105518026	105518190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_105518000_105518200
PB_novel_27545_0	chr3	+	140	1	Antisense	novelGene_ENSMUSG00000027905.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACATATAATACATAAATAA	NA	False	NA	NA	False	NA	NA	NA	105589147	105589287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_105589100_105589300
PB_novel_27546_0	chr3	-	2501	1	NIC	ENSMUSG00000027905.16	novel	2905	11	NA	NA	17	-3438	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105594743	105592242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_105592200_105594700
PB_novel_27555_1	chr3	-	6089	1	NIC	ENSMUSG00000040774.16	novel	2814	9	NA	NA	4162	2016	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	106450736	106444647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_106444600_106450700
PB_novel_27561_0	chr3	+	176	1	Intergenic	novelGene_1727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	14	True	NA	NA	False	NA	NA	NA	107211370	107211546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_107211400_107211500
PB_novel_27567_0	chr3	-	211	1	Intergenic	novelGene_1728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCCAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	107254866	107254655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_107254700_107254900
PB_novel_27568_0	chr3	+	186	1	Intergenic	novelGene_1729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATAAATCTTTTAAG	8823	False	NA	NA	False	NA	NA	NA	107342618	107342804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_107342600_107342800
PB_novel_27581_0	chr3	+	207	1	Intergenic	novelGene_1730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAACT	4845	False	NA	NA	False	AAAAAG	-10	NA	107902143	107902350	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_107902100_107902400
PB_novel_27585_0	chr3	+	165	1	Intergenic	novelGene_1731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAGAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	108029145	108029310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_108029100_108029300
PB_novel_27590_1	chr3	-	175	1	Intergenic	novelGene_1732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAACAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	108163670	108163495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_108163500_108163700
PB_novel_27595_0	chr3	+	4824	1	Antisense	novelGene_ENSMUSG00000068739.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108342175	108346999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_108342200_108347000
PB_novel_27597_0	chr3	-	3613	1	Antisense	novelGene_ENSMUSG00000089188.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	108348925	108345312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_108345300_108348900
PB_novel_27614_0	chr3	-	176	1	Intergenic	novelGene_1733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAACCAAAC	NA	False	NA	NA	False	NA	NA	NA	108660433	108660257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_108660300_108660400
PB_novel_27615_0	chr3	-	193	1	Intergenic	novelGene_1734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAGAAAATGA	6724	False	NA	NA	False	NA	NA	NA	108697773	108697580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_108697600_108697800
PB_novel_27617_2	chr3	+	3167	1	Antisense	novelGene_ENSMUSG00000027881.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	108811132	108814299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_108811100_108814300
PB_novel_27624_0	chr3	-	163	1	Intergenic	novelGene_1735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCTTAAAAAAATCATATAA	NA	False	NA	NA	False	NA	NA	NA	111283124	111282961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_111283000_111283100
PB_novel_27625_0	chr3	-	179	1	Intergenic	novelGene_1736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGCACCCACTGC	NA	False	NA	NA	False	NA	NA	NA	111372898	111372719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_111372700_111372900
PB_novel_27631_0	chr3	+	173	1	Intergenic	novelGene_1737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	112847822	112847995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_112847800_112848000
PB_novel_27633_0	chr3	-	4195	1	Intergenic	novelGene_1738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACCCAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113392086	113387891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_113387900_113392100
PB_novel_27635_0	chr3	-	176	1	Intergenic	novelGene_1739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114602863	114602687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_114602700_114602900
PB_novel_27639_0	chr3	+	193	1	Intergenic	novelGene_1740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGCCAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	115495521	115495714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_115495500_115495700
PB_novel_27654_0	chr3	-	177	1	Intergenic	novelGene_1741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAGAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	116400273	116400096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_116400100_116400300
PB_novel_27657_0	chr3	-	170	1	Intergenic	novelGene_1742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGCCCAAAATGA	NA	False	NA	NA	False	NA	NA	NA	116441039	116440869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_116440900_116441000
PB_novel_27660_0	chr3	-	176	1	Intergenic	novelGene_1743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	116517193	116517017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_116517000_116517200
PB_novel_27666_0	chr3	-	1093	1	Intergenic	novelGene_1744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5085	False	NA	NA	False	NA	NA	NA	116657563	116656470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_116656500_116657600
PB_novel_27668_0	chr3	+	3223	1	Intergenic	novelGene_1745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAAAGAAAAG	5336	False	NA	NA	False	NA	NA	NA	116667104	116670327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_116667100_116670300
PB_novel_27672_0	chr3	-	2105	1	Intergenic	novelGene_1746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CGCCAAAAAAAAAAAAAAAA	7363	False	NA	NA	False	NA	NA	NA	116705346	116703241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_116703200_116705300
PB_novel_27679_0	chr3	-	176	1	Intergenic	novelGene_1747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACAGAAAGATGG	NA	False	NA	NA	False	NA	NA	NA	118291027	118290851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_118290900_118291000
PB_novel_27681_1	chr3	+	170	1	Intergenic	novelGene_1748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	119673629	119673799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_119673600_119673800
PB_novel_27684_0	chr3	+	159	1	Intergenic	novelGene_1749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAATAAAATAAATAAAATT	NA	False	NA	NA	False	NA	NA	NA	121040757	121040916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_121040800_121040900
PB_novel_27688_0	chr3	+	175	1	Intergenic	novelGene_1750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAGTTAAGAAA	NA	False	NA	NA	False	NA	NA	NA	121088205	121088380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_121088200_121088400
PB_novel_27717_0	chr3	+	179	1	Intergenic	novelGene_1751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAGAATGTTAAA	NA	False	NA	NA	False	NA	NA	NA	121757032	121757211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_121757000_121757200
PB_novel_27721_0	chr3	-	169	1	Intergenic	novelGene_1752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAAAATAAGACAAA	NA	False	NA	NA	False	NA	NA	NA	121944377	121944208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_121944200_121944400
PB_novel_27723_0	chr3	-	171	1	Intergenic	novelGene_1753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAGAGAGAGAGCGA	NA	False	NA	NA	False	NA	NA	NA	121987294	121987123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_121987100_121987300
PB_novel_27724_0	chr3	+	175	1	Intergenic	novelGene_1754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAAAGTAAACAA	NA	False	NA	NA	False	NA	NA	NA	122015804	122015979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_122015800_122016000
PB_novel_27732_0	chr3	+	181	1	Intergenic	novelGene_1755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAATGCATAATAAAA	NA	False	NA	NA	False	NA	NA	NA	122066426	122066607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_122066400_122066600
PB_novel_27734_0	chr3	+	166	1	Intergenic	novelGene_1756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122117412	122117578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_122117400_122117600
PB_novel_27735_0	chr3	-	186	1	Intergenic	novelGene_1757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122184585	122184399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_122184400_122184600
PB_novel_27737_0	chr3	+	177	1	Intergenic	novelGene_1758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	122209593	122209770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_122209600_122209800
PB_novel_27743_0	chr3	+	180	1	Intergenic	novelGene_1759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAGAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	122327332	122327512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_122327300_122327500
PB_novel_27744_0	chr3	+	173	1	Intergenic	novelGene_1760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAGATAGATAGAT	NA	False	NA	NA	False	NA	NA	NA	122404995	122405168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_122405000_122405200
PB_novel_27748_0	chr3	-	175	1	Intergenic	novelGene_1761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122443166	122442991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_122443000_122443200
PB_novel_27768_1	chr3	+	1155	1	FSM	ENSMUSG00000096544.3	ENSMUST00000178993.3	331	1	-152	-672	-152	672	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTAACAAAAAAAAAAAAAAA	NA	False	NA	67	True	AATAAA	-27	NA	124179163	124180318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_124179200_124180300
PB_novel_27770_0	chr3	-	178	1	Intergenic	novelGene_1762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	125212172	125211994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_125212000_125212200
PB_novel_27781_0	chr3	-	175	1	Intergenic	novelGene_1763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAGAAA	4777	False	NA	NA	False	NA	NA	NA	127236017	127235842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_127235800_127236000
PB_novel_27782_0	chr3	+	206	1	Intergenic	novelGene_1764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAATAAGACAAA	NA	False	NA	NA	False	NA	NA	NA	127236333	127236539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_127236300_127236500
PB_novel_27783_0	chr3	+	172	1	Intergenic	novelGene_1765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	127238644	127238816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_127238600_127238800
PB_novel_27784_0	chr3	+	187	1	Intergenic	novelGene_1766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	127251491	127251678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_127251500_127251700
PB_novel_27793_0	chr3	-	175	1	Intergenic	novelGene_1767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	127442233	127442058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_127442100_127442200
PB_novel_27798_0	chr3	-	176	1	Intergenic	novelGene_1768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATTAGT	NA	False	NA	NA	False	NA	NA	NA	127722721	127722545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_127722500_127722700
PB_novel_27805_0	chr3	+	157	1	Intergenic	novelGene_1769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	129039985	129040142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_129040000_129040100
PB_novel_27809_0	chr3	+	3048	1	Intergenic	novelGene_1770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129335794	129338842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_129335800_129338800
PB_novel_27811_0	chr3	-	180	1	Intergenic	novelGene_1771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	129358445	129358265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_129358300_129358400
PB_novel_27813_0	chr3	-	176	1	Intergenic	novelGene_1772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	904	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATTATC	NA	False	NA	NA	False	NA	NA	NA	129370830	129370654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_129370700_129370800
PB_novel_27814_0	chr3	+	3343	1	Intergenic	novelGene_1773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129402906	129406249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_129402900_129406200
PB_novel_27819_0	chr3	-	181	1	Intergenic	novelGene_1774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	129453064	129452883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_129452900_129453100
PB_novel_27822_0	chr3	-	177	1	Intergenic	novelGene_1775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAATAAACA	NA	False	NA	NA	False	NA	NA	NA	129483323	129483146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_129483100_129483300
PB_novel_27826_0	chr3	-	163	1	Intergenic	novelGene_1776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAAATTTTTAAAAAG	NA	False	NA	NA	False	NA	NA	NA	129654288	129654125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_129654100_129654300
PB_novel_27832_0	chr3	-	176	1	Intergenic	novelGene_1777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAAGAAGAGAAG	NA	False	NA	NA	False	NA	NA	NA	129879955	129879779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_129879800_129880000
PB_novel_27840_0	chr3	-	171	1	Intergenic	novelGene_1778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAACCTCTCCATA	NA	False	NA	NA	False	NA	NA	NA	130673824	130673653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_130673700_130673800
PB_novel_27841_0	chr3	+	173	1	Intergenic	novelGene_1779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTCAAAAAAGGAACTGAA	NA	False	NA	NA	False	NA	NA	NA	130816218	130816391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_130816200_130816400
PB_novel_27850_0	chr3	+	176	1	Intergenic	novelGene_1780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGCGAG	NA	False	NA	NA	False	NA	NA	NA	130993046	130993222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_130993000_130993200
PB_novel_27853_0	chr3	+	183	1	Antisense	novelGene_ENSMUSG00000106268.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	131078447	131078630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_131078400_131078600
PB_novel_27854_0	chr3	+	130	1	Intergenic	novelGene_1781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAACAAAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	131093165	131093295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_131093200_131093300
PB_novel_27857_0	chr3	-	175	1	Intergenic	novelGene_1782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAGATGAAA	NA	False	NA	NA	False	NA	NA	NA	131393427	131393252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_131393300_131393400
PB_novel_27859_0	chr3	+	116	1	Intergenic	novelGene_1783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAATGGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	132382129	132382245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_132382100_132382200
PB_novel_27863_0	chr3	-	2348	1	Antisense	novelGene_ENSMUSG00000028030.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132547416	132545068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_132545100_132547400
PB_novel_27870_0	chr3	-	169	1	Intergenic	novelGene_1784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATATATTAGAGCCAAC	NA	False	NA	NA	False	NA	NA	NA	133096695	133096526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_133096500_133096700
PB_novel_27873_0	chr3	+	3903	1	Antisense	novelGene_ENSMUSG00000040943.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	133176709	133180612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_133176700_133180600
PB_novel_27874_0	chr3	+	176	1	Intergenic	novelGene_1785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGATAAATC	NA	False	NA	NA	False	NA	NA	NA	133202019	133202195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_133202000_133202200
PB_novel_27878_0	chr3	-	2802	1	NIC	ENSMUSG00000040943.13	novel	9179	11	NA	NA	1	-2738	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133250062	133247260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_133247300_133250100
PB_novel_27885_2	chr3	+	110	1	Intergenic	novelGene_1786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAGAAAAAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134770094	134770204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_134770100_134770200
PB_novel_27888_5	chr3	-	5027	1	Antisense	novelGene_ENSMUSG00000045328.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134926680	134921653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_134921700_134926700
PB_novel_27907_0	chr3	-	181	1	Intergenic	novelGene_1787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	135203724	135203543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_135203500_135203700
PB_novel_27909_0	chr3	-	178	1	Intergenic	novelGene_1788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAATAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	135223565	135223387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_135223400_135223600
PB_novel_27910_0	chr3	-	180	1	Intergenic	novelGene_1789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAATAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	135232860	135232680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_135232700_135232900
PB_novel_27910_1	chr3	-	153	2	Antisense	novelGene_ENSMUSG00000028164.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAATAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	135234442	135232679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_135232813_135234422
PB_novel_27912_0	chr3	-	132	1	Intergenic	novelGene_1790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	135257413	135257281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_135257300_135257400
PB_novel_27916_0	chr3	+	169	1	Intergenic	novelGene_1791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTCGACAGGAGT	NA	False	NA	NA	False	NA	NA	NA	135474244	135474413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_135474200_135474400
PB_novel_27919_0	chr3	+	3540	1	Intergenic	novelGene_1792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAGAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	136413410	136416950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_136413400_136417000
PB_novel_27920_0	chr3	-	1227	1	Intergenic	novelGene_1793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-36	NA	136429288	136428061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_136428100_136429300
PB_novel_27923_0	chr3	+	156	1	Intergenic	novelGene_1794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	137486475	137486631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_137486500_137486600
PB_novel_27924_0	chr3	+	181	1	Intergenic	novelGene_1795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATTTAAAAACAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	137529599	137529780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_137529600_137529800
PB_novel_27928_0	chr3	-	177	1	Intergenic	novelGene_1796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	137581224	137581047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_137581000_137581200
PB_novel_27929_0	chr3	-	176	1	Intergenic	novelGene_1797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGAACCAGG	NA	False	NA	NA	False	NA	NA	NA	137581675	137581499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_137581500_137581700
PB_novel_27933_0	chr3	-	169	1	Intergenic	novelGene_1798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAAAAGAATAT	NA	False	NA	NA	False	NA	NA	NA	137741660	137741491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_137741500_137741700
PB_novel_27948_0	chr3	-	3071	1	Intergenic	novelGene_1799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAGGCAAAAAAAAAAAAAA	1649	False	NA	NA	False	NA	NA	NA	138492182	138489111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_138489100_138492200
PB_novel_27962_0	chr3	-	181	1	Intergenic	novelGene_1800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAACAAA	NA	False	NA	NA	False	NA	NA	NA	139894360	139894179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_139894200_139894400
PB_novel_27963_0	chr3	+	178	1	Intergenic	novelGene_1801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAGGATAGC	NA	False	NA	NA	False	NA	NA	NA	140464968	140465146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_140465000_140465100
PB_novel_27974_0	chr3	-	174	1	Intergenic	novelGene_1802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	600	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGATTTAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	142466755	142466581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_142466600_142466800
PB_novel_27981_0	chr3	-	176	1	Intergenic	novelGene_1803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAGAAAAACAAGTT	NA	False	NA	NA	False	NA	NA	NA	142729249	142729073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_142729100_142729200
PB_novel_27990_0	chr3	-	175	1	Intergenic	novelGene_1804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9232	False	NA	NA	False	NA	NA	NA	144190156	144189981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_144190000_144190200
PB_novel_27995_0	chr3	-	175	1	Intergenic	novelGene_1805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGAAC	NA	False	NA	NA	False	NA	NA	NA	144319226	144319051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_144319100_144319200
PB_novel_27999_0	chr3	-	176	1	Intergenic	novelGene_1806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	956	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	144662764	144662588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_144662600_144662800
PB_novel_28013_0	chr3	+	174	1	Intergenic	novelGene_1807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTAAAAAATATATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	145662821	145662995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_145662800_145663000
PB_novel_28015_0	chr3	+	180	1	Intergenic	novelGene_1808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	274	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	145679550	145679730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_145679600_145679700
PB_novel_28016_0	chr3	-	175	1	Intergenic	novelGene_1809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	145696868	145696693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_145696700_145696900
PB_novel_28023_0	chr3	-	176	1	Intergenic	novelGene_1810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	6892	False	NA	NA	False	NA	NA	NA	146147005	146146829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_146146800_146147000
PB_novel_28024_0	chr3	+	180	1	Intergenic	novelGene_1811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAATAAAAAAAAA	2025	False	NA	NA	False	NA	NA	NA	146152295	146152475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_146152300_146152500
PB_novel_28037_0	chr3	+	176	1	Intergenic	novelGene_1812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	148367777	148367953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_148367800_148368000
PB_novel_28042_0	chr3	-	157	1	Intergenic	novelGene_1813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAACAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	149836696	149836539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_149836500_149836700
PB_novel_28048_2	chr3	-	2548	2	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151922595	151919928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_151922064_151922182
PB_novel_28050_0	chr3	+	175	1	Intergenic	novelGene_1814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGAATTACC	NA	False	NA	NA	False	NA	NA	NA	151932516	151932691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_151932500_151932700
PB_novel_28053_0	chr3	+	183	1	Intergenic	novelGene_1815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAC	2915	False	NA	NA	False	NA	NA	NA	151991358	151991541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_151991400_151991500
PB_novel_28058_0	chr3	+	5156	1	FSM	ENSMUSG00000104546.2	ENSMUST00000199418.2	1778	1	-2664	-714	-2664	714	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152089232	152094388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr3_+_152089200_152094400
PB_novel_28065_0	chr3	+	178	1	Intergenic	novelGene_1816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4334	False	NA	NA	False	NA	NA	NA	152925487	152925665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_152925500_152925700
PB_novel_28067_0	chr3	+	6165	2	Antisense	novelGene_ENSMUSG00000052544.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152955681	152961989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_+_152957738_152957880
PB_novel_28081_1	chr3	+	186	1	Intergenic	novelGene_1817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	153514531	153514717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_153514500_153514700
PB_novel_28082_0	chr3	+	176	1	Intergenic	novelGene_1818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	153544827	153545003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_153544800_153545000
PB_novel_28083_0	chr3	+	177	1	Intergenic	novelGene_1819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	153595249	153595426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_153595200_153595400
PB_novel_28084_0	chr3	-	2257	1	NIC	ENSMUSG00000005493.16	novel	3325	20	NA	NA	229	-46380	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCGAGAGTGAGGATTAAAA	NA	False	NA	NA	False	NA	NA	NA	153611546	153609289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr3_-_153609300_153611500
PB_novel_28090_0	chr3	-	173	1	Intergenic	novelGene_1820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	153636412	153636239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_153636200_153636400
PB_novel_28105_0	chr3	+	177	1	Intergenic	novelGene_1821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAGAACTTAGTTC	NA	False	NA	NA	False	NA	NA	NA	157400302	157400479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_+_157400300_157400500
PB_novel_28109_0	chr3	-	184	1	Antisense	novelGene_ENSMUSG00000028177.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157631383	157631199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_157631200_157631400
PB_novel_28110_0	chr3	-	171	1	Intergenic	novelGene_1822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATGTC	NA	False	NA	NA	False	NA	NA	NA	157649076	157648905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_157648900_157649100
PB_novel_28115_0	chr3	-	183	1	Intergenic	novelGene_1823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	157684776	157684593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_157684600_157684800
PB_novel_28117_0	chr3	-	3039	1	Antisense	novelGene_ENSMUSG00000039988.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157707204	157704165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr3_-_157704200_157707200
PB_novel_28130_0	chr4	-	175	1	Intergenic	novelGene_290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3370226	3370051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_3370100_3370200
PB_novel_28148_0	chr4	-	178	1	Intergenic	novelGene_291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	4969879	4969701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_4969700_4969900
PB_novel_28155_0	chr4	-	3305	6	Antisense	novelGene_ENSMUSG00000028243.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6217922	6201642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_6202441_6203774_6203861_6204563_6204673_6208804_6208942_6214636_6214800_6215910
PB_novel_28160_0	chr4	-	170	1	Intergenic	novelGene_292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAATCA	NA	False	NA	NA	False	NA	NA	NA	6517068	6516898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_6516900_6517100
PB_novel_28170_0	chr4	+	172	1	Intergenic	novelGene_293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAATTAGTTGATC	NA	False	NA	NA	False	NA	NA	NA	8643789	8643961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_8643800_8644000
PB_novel_28181_0	chr4	-	174	1	Intergenic	novelGene_294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	8981746	8981572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_8981600_8981700
PB_novel_28185_0	chr4	-	172	1	Intergenic	novelGene_295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATAACAAACG	NA	False	NA	NA	False	NA	NA	NA	9817695	9817523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_9817500_9817700
PB_novel_28187_0	chr4	-	173	1	Intergenic	novelGene_296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	10484066	10483893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_10483900_10484100
PB_novel_28191_0	chr4	+	174	1	Intergenic	novelGene_297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	10909296	10909470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_10909300_10909500
PB_novel_28193_1	chr4	-	183	1	Intergenic	novelGene_300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6094	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAATAATAAAATAA	NA	False	NA	-28	True	NA	NA	NA	11046161	11045978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_11046000_11046200
PB_novel_28194_0	chr4	-	174	1	Intergenic	novelGene_298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGATGT	NA	False	NA	NA	False	NA	NA	NA	11015888	11015714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_11015700_11015900
PB_novel_28195_0	chr4	+	157	1	Intergenic	novelGene_299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	11038187	11038344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_11038200_11038300
PB_novel_28197_0	chr4	+	195	1	Intergenic	novelGene_301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATACAAACCCAAAA	NA	False	NA	NA	False	NA	NA	NA	11066110	11066305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_11066100_11066300
PB_novel_28199_0	chr4	-	180	1	Intergenic	novelGene_302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAACAGT	NA	False	NA	NA	False	NA	NA	NA	11084685	11084505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_11084500_11084700
PB_novel_28200_0	chr4	+	218	1	Intergenic	novelGene_303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAATAC	9059	False	NA	NA	False	NA	NA	NA	11114455	11114673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_11114500_11114700
PB_novel_28202_0	chr4	+	176	1	Intergenic	novelGene_304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11121838	11122014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_11121800_11122000
PB_novel_28203_0	chr4	-	176	1	Intergenic	novelGene_305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	9890	False	NA	NA	False	NA	NA	NA	11146360	11146184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_11146200_11146400
PB_novel_28205_0	chr4	-	171	1	Intergenic	novelGene_306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAACAAAACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	11158161	11157990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_11158000_11158200
PB_novel_28209_1	chr4	+	176	1	Intergenic	novelGene_308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAAAGTCAGTTA	NA	False	NA	NA	False	NA	NA	NA	11244941	11245117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_11244900_11245100
PB_novel_28214_0	chr4	+	175	1	Intergenic	novelGene_307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	7791	False	NA	NA	False	NA	NA	NA	11210202	11210377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_11210200_11210400
PB_novel_28216_0	chr4	+	173	1	Intergenic	novelGene_309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAAGCAAATTA	NA	False	NA	NA	False	NA	NA	NA	11250892	11251065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_11250900_11251100
PB_novel_28221_0	chr4	-	161	1	Intergenic	novelGene_310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATAAATCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	11361503	11361342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_11361300_11361500
PB_novel_28226_0	chr4	-	177	1	Intergenic	novelGene_311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	11484802	11484625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_11484600_11484800
PB_novel_28253_1	chr4	+	2061	1	Intergenic	novelGene_313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2332	False	NA	NA	False	ATTAAA	-11	NA	12235960	12238021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_12236000_12238000
PB_novel_28253_6	chr4	+	3096	2	Intergenic	novelGene_312	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1249	False	NA	NA	False	ATTAAA	-11	NA	12234877	12238021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_12235271_12235318
PB_novel_28259_0	chr4	-	179	1	Intergenic	novelGene_314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	13897730	13897551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_13897600_13897700
PB_novel_28261_0	chr4	-	731	1	Intergenic	novelGene_315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	14231914	14231183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_14231200_14231900
PB_novel_28265_0	chr4	+	193	1	Intergenic	novelGene_316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	14801250	14801443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_14801200_14801400
PB_novel_28270_0	chr4	-	3704	2	Antisense	novelGene_ENSMUSG00000028221.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGGCAA	NA	False	NA	NA	False	NA	NA	NA	14893521	14888816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_14892497_14893497
PB_novel_28271_0	chr4	+	165	1	Intergenic	novelGene_317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	7140	False	NA	NA	False	NA	NA	NA	14921593	14921758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_14921600_14921800
PB_novel_28273_0	chr4	-	177	1	Intergenic	novelGene_318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTTAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	14948160	14947983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_14948000_14948200
PB_novel_28279_0	chr4	+	173	1	Intergenic	novelGene_319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAATAAATAAAT	1924	False	NA	NA	False	NA	NA	NA	15960507	15960680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_15960500_15960700
PB_novel_28282_0	chr4	+	143	1	Intergenic	novelGene_320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAATAAAATGAAA	NA	False	NA	NA	False	NA	NA	NA	16010130	16010273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_16010100_16010300
PB_novel_28290_0	chr4	+	179	1	Intergenic	novelGene_321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTTG	NA	False	NA	NA	False	NA	NA	NA	18619882	18620061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_18619900_18620100
PB_novel_28297_0	chr4	-	173	1	Intergenic	novelGene_322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAATTTTA	NA	False	NA	NA	False	NA	NA	NA	19850595	19850422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_19850400_19850600
PB_novel_28301_0	chr4	+	174	1	Intergenic	novelGene_323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAGAAGCC	NA	False	NA	NA	False	NA	NA	NA	21693916	21694090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_21693900_21694100
PB_novel_28303_0	chr4	-	177	1	Intergenic	novelGene_324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21725181	21725004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_21725000_21725200
PB_novel_28304_0	chr4	+	177	1	Intergenic	novelGene_325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	21725852	21726029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_21725900_21726000
PB_novel_28308_0	chr4	+	152	1	Intergenic	novelGene_326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5040	False	NA	NA	False	NA	NA	NA	21754745	21754897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_21754700_21754900
PB_novel_28312_0	chr4	+	281	1	Intergenic	novelGene_327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	21764243	21764524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_21764200_21764500
PB_novel_28316_0	chr4	-	169	2	Antisense	novelGene_ENSMUSG00000028246.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAATCATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	21969222	21788369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_21788422_21969105
PB_novel_28317_0	chr4	-	148	1	Intergenic	novelGene_328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAATCATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	21788517	21788369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_21788400_21788500
PB_novel_28319_0	chr4	-	3248	2	Antisense	novelGene_ENSMUSG00000028248.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-19	NA	21874925	21869700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_21871607_21873583
PB_novel_28323_0	chr4	+	175	1	Intergenic	novelGene_329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGCAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	21954804	21954979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_21954800_21955000
PB_novel_28334_0	chr4	-	1602	1	Intergenic	novelGene_330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACTAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-5	NA	24558301	24556699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_24556700_24558300
PB_novel_28335_0	chr4	-	174	1	Intergenic	novelGene_331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAATGTTGGCAAGA	NA	False	NA	NA	False	NA	NA	NA	24579782	24579608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_24579600_24579800
PB_novel_28342_0	chr4	+	176	1	Intergenic	novelGene_332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	25032145	25032321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_25032100_25032300
PB_novel_28343_0	chr4	+	188	1	Intergenic	novelGene_333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAATTAAAACATCTGTA	NA	False	NA	NA	False	NA	NA	NA	25304362	25304550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_25304400_25304600
PB_novel_28354_0	chr4	-	185	1	Intergenic	novelGene_334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	27792680	27792495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_27792500_27792700
PB_novel_28365_0	chr4	-	1798	1	Intergenic	novelGene_335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	6746	False	NA	NA	False	NA	NA	NA	31963833	31962035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_31962000_31963800
PB_novel_28366_0	chr4	+	177	1	Intergenic	novelGene_336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATTTT	NA	False	NA	NA	False	NA	NA	NA	31983462	31983639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_31983500_31983600
PB_novel_28368_0	chr4	-	175	1	Intergenic	novelGene_337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	32132322	32132147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_32132100_32132300
PB_novel_28376_0	chr4	-	174	1	Intergenic	novelGene_338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAGATC	NA	False	NA	NA	False	NA	NA	NA	32606384	32606210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_32606200_32606400
PB_novel_28377_0	chr4	+	2506	1	Genic_Genomic	ENSMUSG00000028282.13	novel	NA	NA	NA	NA	-2	-13856	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	0	True	NA	NA	False	NA	NA	NA	32615448	32617954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_32615400_32618000
PB_novel_28383_0	chr4	-	1977	1	Antisense	novelGene_ENSMUSG00000058006.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32735091	32733114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_32733100_32735100
PB_novel_28386_0	chr4	+	176	1	Intergenic	novelGene_339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4901	False	NA	NA	False	NA	NA	NA	32764018	32764194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_32764000_32764200
PB_novel_28387_0	chr4	+	173	1	Intergenic	novelGene_340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTATAAAAAAAAAAAATCTG	NA	False	NA	NA	False	NA	NA	NA	32778545	32778718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_32778500_32778700
PB_novel_28388_0	chr4	+	143	1	Intergenic	novelGene_341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAATATAAATCAAAAAT	NA	False	NA	NA	False	NA	NA	NA	32778774	32778917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_32778800_32778900
PB_novel_28392_0	chr4	+	1022	1	Genic_Genomic	ENSMUSG00000045854.5	novel	NA	NA	NA	NA	949	693	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATC	963	False	NA	NA	False	NA	NA	NA	32801230	32802252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_32801200_32802300
PB_novel_28394_0	chr4	+	177	1	Intergenic	novelGene_342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	32849448	32849625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_32849400_32849600
PB_novel_28395_0	chr4	-	185	1	Intergenic	novelGene_343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGATGGGCTATGG	6196	False	NA	NA	False	NA	NA	NA	32858412	32858227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_32858200_32858400
PB_novel_28398_0	chr4	-	139	1	Intergenic	novelGene_344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAAAAAAGCTTT	NA	False	NA	NA	False	NA	NA	NA	32925974	32925835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_32925800_32926000
PB_novel_28403_1	chr4	-	176	1	Intergenic	novelGene_346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	33011625	33011449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_33011400_33011600
PB_novel_28405_0	chr4	-	188	1	Intergenic	novelGene_345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAGTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33006219	33006031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_33006000_33006200
PB_novel_28409_0	chr4	-	176	1	Intergenic	novelGene_347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAATATAA	NA	False	NA	NA	False	NA	NA	NA	33141615	33141439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_33141400_33141600
PB_novel_28410_0	chr4	-	180	1	Intergenic	novelGene_348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGATAGCCAGA	1931	False	NA	NA	False	NA	NA	NA	33170081	33169901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_33169900_33170100
PB_novel_28414_0	chr4	+	176	1	Intergenic	novelGene_349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAACATCAA	NA	False	NA	NA	False	NA	NA	NA	33285052	33285228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_33285100_33285200
PB_novel_28416_0	chr4	+	177	1	Antisense	novelGene_ENSMUSG00000086127.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAACAGTT	NA	False	NA	NA	False	NA	NA	NA	33304805	33304982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_33304800_33305000
PB_novel_28434_0	chr4	+	175	1	Intergenic	novelGene_350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	34547477	34547652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_34547500_34547700
PB_novel_28440_0	chr4	-	3141	1	Intergenic	novelGene_351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGACCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34591651	34588510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_34588500_34591700
PB_novel_28441_0	chr4	+	4745	1	NIC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	-1	800	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGGAAAAAAAAAAAA	8	True	NA	NA	False	NA	NA	NA	34614976	34619721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_34615000_34619700
PB_novel_28450_0	chr4	+	2759	1	Intergenic	novelGene_352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGGGAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	34832101	34834860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_34832100_34834900
PB_novel_28451_0	chr4	+	167	1	Intergenic	novelGene_353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	34861817	34861984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_34861800_34862000
PB_novel_28453_0	chr4	+	175	1	Intergenic	novelGene_354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	34876196	34876371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_34876200_34876400
PB_novel_28455_0	chr4	+	138	1	Intergenic	novelGene_355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCAAC	NA	False	NA	NA	False	NA	NA	NA	34881438	34881576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_34881400_34881600
PB_novel_28459_0	chr4	-	208	1	Intergenic	novelGene_356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACATAAAAAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	34935993	34935785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_34935800_34936000
PB_novel_28462_0	chr4	+	175	1	Intergenic	novelGene_357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAATAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	35010807	35010982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_35010800_35011000
PB_novel_28463_0	chr4	+	5157	1	Intergenic	novelGene_358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35030456	35035613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_35030500_35035600
PB_novel_28466_0	chr4	+	281	1	Intergenic	novelGene_359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATAAAATAAATATTT	NA	False	NA	NA	False	NA	NA	NA	35149778	35150059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_35149800_35150100
PB_novel_28467_0	chr4	+	176	1	Intergenic	novelGene_360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35166510	35166686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_35166500_35166700
PB_novel_28470_0	chr4	+	170	1	Intergenic	novelGene_361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	35523292	35523462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_35523300_35523500
PB_novel_28475_0	chr4	-	169	1	Intergenic	novelGene_362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATAAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	36805980	36805811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_36805800_36806000
PB_novel_28480_0	chr4	+	177	1	Intergenic	novelGene_363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38983273	38983450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_38983300_38983400
PB_novel_28483_0	chr4	+	159	1	Intergenic	novelGene_364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATCTTTTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	40131548	40131707	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_40131500_40131700
PB_novel_28486_2	chr4	+	175	1	Intergenic	novelGene_365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4087	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40214113	40214288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_40214100_40214300
PB_novel_28487_0	chr4	+	181	1	Intergenic	novelGene_366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAGGAAAC	NA	False	NA	NA	False	NA	NA	NA	40217791	40217972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_40217800_40218000
PB_novel_28489_0	chr4	-	201	1	Intergenic	novelGene_367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATATGGAAAAAAAAGGAAT	7447	False	NA	NA	False	NA	NA	NA	40232358	40232157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_40232200_40232400
PB_novel_28497_0	chr4	+	167	1	Intergenic	novelGene_368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATCTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40691910	40692077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_40691900_40692100
PB_novel_28512_0	chr4	+	158	1	Intergenic	novelGene_369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	8198	False	NA	NA	False	NA	NA	NA	40861572	40861730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_40861600_40861700
PB_novel_28521_0	chr4	-	1143	1	Intergenic	novelGene_370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41002132	41000989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_41001000_41002100
PB_novel_28523_0	chr4	-	157	1	Intergenic	novelGene_371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAATAATATATATA	NA	False	NA	NA	False	NA	NA	NA	41006989	41006832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_41006800_41007000
PB_novel_28528_0	chr4	-	183	1	Intergenic	novelGene_372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAAAGAAGACAGCCA	NA	False	NA	NA	False	NA	NA	NA	41051853	41051670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_41051700_41051900
PB_novel_28529_0	chr4	+	172	1	Intergenic	novelGene_373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAGAAGAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	41060725	41060897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_41060700_41060900
PB_novel_28545_0	chr4	-	177	1	Intergenic	novelGene_374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGAGTTTATC	NA	False	NA	NA	False	NA	NA	NA	41177384	41177207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_41177200_41177400
PB_novel_28575_0	chr4	+	174	1	Intergenic	novelGene_375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATATTTTAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	41964589	41964763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_41964600_41964800
PB_novel_28579_0	chr4	+	173	1	Intergenic	novelGene_376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATATTTTAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	42316804	42316977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_42316800_42317000
PB_novel_28587_0	chr4	-	173	1	Intergenic	novelGene_377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATATTTTAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	42855337	42855164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_42855200_42855300
PB_novel_28594_0	chr4	-	170	1	Intergenic	novelGene_378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATACATTTAAAAAAAAAA	7744	False	NA	NA	False	NA	NA	NA	42992724	42992554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_42992600_42992700
PB_novel_28596_0	chr4	-	162	1	Intergenic	novelGene_379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAAAAAAAATACTTAAA	9198	False	NA	NA	False	NA	NA	NA	43016614	43016452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_43016500_43016600
PB_novel_28599_0	chr4	-	174	1	Intergenic	novelGene_380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	43053916	43053742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_43053700_43053900
PB_novel_28602_0	chr4	+	178	1	Intergenic	novelGene_381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43081695	43081873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_43081700_43081900
PB_novel_28604_0	chr4	-	180	1	Intergenic	novelGene_382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATTAATTAAAATTAAA	NA	False	NA	NA	False	NA	NA	NA	43088846	43088666	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_43088700_43088800
PB_novel_28607_0	chr4	+	172	1	Intergenic	novelGene_383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTTTAAAAAAGAAGGAAAG	2403	False	NA	NA	False	NA	NA	NA	43269587	43269759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_43269600_43269800
PB_novel_28609_0	chr4	+	181	1	Intergenic	novelGene_384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAATGTATAGCATA	NA	False	NA	NA	False	NA	NA	NA	43432672	43432853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_43432700_43432900
PB_novel_28616_0	chr4	-	170	1	Intergenic	novelGene_385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCTTTTTAAAAAAAATGAA	5531	False	NA	NA	False	NA	NA	NA	43528809	43528639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_43528600_43528800
PB_novel_28620_0	chr4	+	177	1	Intergenic	novelGene_386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43891688	43891865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_43891700_43891900
PB_novel_28631_0	chr4	+	180	1	Intergenic	novelGene_387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGTAACA	7239	False	NA	NA	False	NA	NA	NA	44011685	44011865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_44011700_44011900
PB_novel_28633_0	chr4	-	176	1	Intergenic	novelGene_388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAAAATGA	5780	False	NA	NA	False	NA	NA	NA	44061272	44061096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_44061100_44061300
PB_novel_28638_0	chr4	-	177	1	Intergenic	novelGene_389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44109680	44109503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_44109500_44109700
PB_novel_28644_0	chr4	+	203	1	Intergenic	novelGene_390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	44198734	44198937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_44198700_44198900
PB_novel_28646_0	chr4	+	186	1	Intergenic	novelGene_391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAATACATTAAAAAAA	NA	False	NA	6	True	NA	NA	NA	44223152	44223338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_44223200_44223300
PB_novel_28650_0	chr4	+	166	1	Intergenic	novelGene_392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44246740	44246906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_44246700_44246900
PB_novel_28651_0	chr4	-	182	1	Intergenic	novelGene_393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAATGTACTCCCAA	NA	False	NA	NA	False	NA	NA	NA	44248511	44248329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_44248300_44248500
PB_novel_28653_0	chr4	-	175	1	Intergenic	novelGene_394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAATTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44284864	44284689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_44284700_44284900
PB_novel_28657_0	chr4	-	1075	1	Antisense	novelGene_ENSMUSG00000035683.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	44309118	44308043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_44308000_44309100
PB_novel_28666_0	chr4	+	165	1	Intergenic	novelGene_395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATCTTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44861888	44862053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_44861900_44862100
PB_novel_28674_0	chr4	-	173	1	Intergenic	novelGene_396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAAAAAAGACAGTG	NA	False	NA	NA	False	NA	NA	NA	45054058	45053885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_45053900_45054100
PB_novel_28679_0	chr4	+	4628	1	Genic_Genomic	ENSMUSG00000035572.17	novel	NA	NA	NA	NA	-12	-23763	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	-10	True	NA	NA	False	NA	NA	NA	45342088	45346716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_45342100_45346700
PB_novel_28681_0	chr4	-	125	1	Intergenic	novelGene_397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	2543	False	NA	NA	False	NA	NA	NA	45395109	45394984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_45395000_45395100
PB_novel_28684_0	chr4	+	176	1	Intergenic	novelGene_398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATATATAAAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	45534937	45535113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_45534900_45535100
PB_novel_28687_0	chr4	+	173	1	Intergenic	novelGene_399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAAATT	2778	False	NA	NA	False	NA	NA	NA	45801882	45802055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_45801900_45802100
PB_novel_28688_1	chr4	+	160	1	Intergenic	novelGene_400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	7362	False	NA	NA	False	NA	NA	NA	45812240	45812400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_45812200_45812400
PB_novel_28692_0	chr4	+	2408	1	Genic_Genomic	ENSMUSG00000028330.9	novel	NA	NA	NA	NA	-26	-19105	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACCCAAAAAAAAAAAAA	1	True	NA	NA	False	NA	NA	NA	46138586	46140994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_46138600_46141000
PB_novel_28695_0	chr4	+	127	1	Intergenic	novelGene_401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACCCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46186245	46186372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_46186200_46186400
PB_novel_28697_0	chr4	+	177	1	Intergenic	novelGene_402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	46228601	46228778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_46228600_46228800
PB_novel_28704_0	chr4	+	152	1	Intergenic	novelGene_403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	7295	False	NA	NA	False	NA	NA	NA	46479867	46480019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_46479900_46480000
PB_novel_28717_0	chr4	+	176	1	Intergenic	novelGene_404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATAGTTGGTGGAA	5432	False	NA	NA	False	NA	NA	NA	47392588	47392764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_47392600_47392800
PB_novel_28727_0	chr4	-	169	1	Intergenic	novelGene_405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTTAAAAAAAAACG	NA	False	NA	NA	False	NA	NA	NA	48117504	48117335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_48117300_48117500
PB_novel_28730_0	chr4	-	619	1	FSM	ENSMUSG00000081953.2	ENSMUST00000118949.2	1016	1	1011	-614	1011	614	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATGAAAAAAAAAAGAAAAT	NA	False	NA	NA	False	AATAAA	-12	NA	48344219	48343600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_48343600_48344200
PB_novel_28733_0	chr4	-	160	1	Intergenic	novelGene_406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	48406202	48406042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_48406000_48406200
PB_novel_28743_0	chr4	+	138	1	Intergenic	novelGene_407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48552125	48552263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_48552100_48552300
PB_novel_28752_0	chr4	-	176	1	Intergenic	novelGene_408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48666545	48666369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_48666400_48666500
PB_novel_28753_1	chr4	+	177	1	Intergenic	novelGene_409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	269	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48697058	48697235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_48697100_48697200
PB_novel_28755_0	chr4	+	173	1	Intergenic	novelGene_410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	48836950	48837123	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_48837000_48837100
PB_novel_28756_0	chr4	-	167	1	Intergenic	novelGene_411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	49231011	49230844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_49230800_49231000
PB_novel_28757_0	chr4	-	177	1	Intergenic	novelGene_412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAATAAACAA	NA	False	NA	NA	False	NA	NA	NA	49234610	49234433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_49234400_49234600
PB_novel_28762_0	chr4	-	184	1	Intergenic	novelGene_413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGAACTGCAT	NA	False	NA	NA	False	NA	NA	NA	49655179	49654995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_49655000_49655200
PB_novel_28769_0	chr4	+	177	1	Intergenic	novelGene_414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51782153	51782330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_51782200_51782300
PB_novel_28775_0	chr4	+	166	1	Intergenic	novelGene_415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTACAAAAAAAAAAGATTGG	8806	False	NA	NA	False	NA	NA	NA	52448916	52449082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_52448900_52449100
PB_novel_28776_0	chr4	+	165	1	Intergenic	novelGene_416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52517962	52518127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_52518000_52518100
PB_novel_28780_0	chr4	+	6026	1	Antisense	novelGene_ENSMUSG00000015243.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2198	False	NA	NA	False	AATAAA	-40	NA	53131024	53137050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_53131000_53137000
PB_novel_28787_8	chr4	+	3709	2	Intergenic	novelGene_417	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	20	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAGAAAGAAAGAAA	3	True	NA	NA	False	NA	NA	NA	53341422	53346188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_53341538_53342594
PB_novel_28810_0	chr4	+	176	1	Intergenic	novelGene_418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAGAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	54929255	54929431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_54929300_54929400
PB_novel_28816_0	chr4	+	177	1	Intergenic	novelGene_419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAATGAGCG	NA	False	NA	NA	False	NA	NA	NA	55200598	55200775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_55200600_55200800
PB_novel_28817_0	chr4	+	176	1	Intergenic	novelGene_420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	55238874	55239050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_55238900_55239000
PB_novel_28826_0	chr4	-	82	1	Intergenic	novelGene_421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATGAGGG	NA	False	NA	NA	False	NA	NA	NA	55324573	55324491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_55324500_55324600
PB_novel_28829_0	chr4	-	1151	1	Intergenic	novelGene_422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAACTAAA	NA	False	NA	NA	False	NA	NA	NA	55385308	55384157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_55384200_55385300
PB_novel_28832_0	chr4	+	175	1	Intergenic	novelGene_423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	55491910	55492085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_55491900_55492100
PB_novel_28840_0	chr4	-	162	1	Intergenic	novelGene_424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATCAAAAAAA	7514	False	NA	NA	False	NA	NA	NA	56857657	56857495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_56857500_56857700
PB_novel_28844_0	chr4	+	161	1	Intergenic	novelGene_425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATCTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56964097	56964258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_56964100_56964300
PB_novel_28864_0	chr4	-	202	1	Intergenic	novelGene_426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57792585	57792383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_57792400_57792600
PB_novel_28871_0	chr4	-	170	1	Intergenic	novelGene_427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAGAGAAGAGAAAG	9841	False	NA	NA	False	NA	NA	NA	57933976	57933806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_57933800_57934000
PB_novel_28874_0	chr4	+	164	1	Intergenic	novelGene_428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58181602	58181766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_58181600_58181800
PB_novel_28876_0	chr4	-	176	1	Intergenic	novelGene_429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACAACAACAACAAC	3482	False	NA	NA	False	NA	NA	NA	58455453	58455277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_58455300_58455500
PB_novel_28885_0	chr4	-	173	1	Intergenic	novelGene_430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCTTTTAAAAAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	59001222	59001049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_59001000_59001200
PB_novel_28886_0	chr4	+	82	1	Intergenic	novelGene_431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	59109312	59109394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_59109300_59109400
PB_novel_28890_0	chr4	+	145	1	Intergenic	novelGene_432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTTATTTAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	59138304	59138449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_59138300_59138400
PB_novel_28891_0	chr4	+	180	1	Intergenic	novelGene_433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAATAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59148339	59148519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_59148300_59148500
PB_novel_28894_0	chr4	+	208	1	Intergenic	novelGene_434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	225	False	NA	NA	False	NA	NA	NA	59197787	59197995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_59197800_59198000
PB_novel_28895_0	chr4	-	922	1	Intergenic	novelGene_435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59216319	59215397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_59215400_59216300
PB_novel_28897_0	chr4	-	124	1	Antisense	novelGene_ENSMUSG00000028381.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAAAAAGG	NA	False	NA	NA	False	AATACA	-31	NA	59221749	59221625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_59221600_59221700
PB_novel_28899_0	chr4	+	197	1	Intergenic	novelGene_436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGATTTTAAT	NA	False	NA	NA	False	NA	NA	NA	59249161	59249358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_59249200_59249400
PB_novel_28900_0	chr4	-	173	1	Intergenic	novelGene_437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59279195	59279022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_59279000_59279200
PB_novel_28902_0	chr4	+	1468	1	Intergenic	novelGene_438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATGAATAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59326864	59328332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_59326900_59328300
PB_novel_28910_0	chr4	+	176	1	Intergenic	novelGene_439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATAAATGCTA	NA	False	NA	NA	False	NA	NA	NA	59570749	59570925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_59570700_59570900
PB_novel_28912_0	chr4	-	176	1	Intergenic	novelGene_440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAGAAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	59654397	59654221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_59654200_59654400
PB_novel_28916_0	chr4	-	167	1	Intergenic	novelGene_441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59797450	59797283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_59797300_59797400
PB_novel_28936_0	chr4	+	177	1	Intergenic	novelGene_442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAAATAATGAGC	NA	False	NA	NA	False	NA	NA	NA	62255973	62256150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_62256000_62256200
PB_novel_28938_0	chr4	-	176	1	Intergenic	novelGene_443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAGTAAG	NA	False	NA	NA	False	NA	NA	NA	62286846	62286670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_62286700_62286800
PB_novel_28946_0	chr4	-	167	1	Intergenic	novelGene_444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAAAAAAAAAAAGAGGC	NA	False	NA	NA	False	NA	NA	NA	62397406	62397239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_62397200_62397400
PB_novel_28947_0	chr4	-	218	1	Intergenic	novelGene_445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GATTTAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62398125	62397907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_62397900_62398100
PB_novel_28948_0	chr4	-	5276	1	NIC	ENSMUSG00000028393.11	novel	1247	12	NA	NA	6	-5444	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATCT	NA	False	NA	NA	False	NA	NA	NA	62438125	62432849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_62432800_62438100
PB_novel_28951_0	chr4	+	179	1	Intergenic	novelGene_446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGAGTGTATT	NA	False	NA	NA	False	NA	NA	NA	62472844	62473023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_62472800_62473000
PB_novel_28957_0	chr4	+	173	1	Intergenic	novelGene_447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	62800349	62800522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_62800300_62800500
PB_novel_28970_0	chr4	-	176	1	Intergenic	novelGene_448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAAAGGATGAA	NA	False	NA	NA	False	NA	NA	NA	64939934	64939758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_64939800_64939900
PB_novel_28972_0	chr4	-	172	1	Intergenic	novelGene_449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGAAAGGATTGAA	NA	False	NA	NA	False	NA	NA	NA	65552035	65551863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_65551900_65552000
PB_novel_28981_0	chr4	+	168	1	Intergenic	novelGene_450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	68797113	68797281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_68797100_68797300
PB_novel_28983_1	chr4	-	966	1	FSM	ENSMUSG00000046341.6	ENSMUST00000120560.2	450	1	-89	-427	-89	427	mono-exon	FALSE	NA	NA	NA	NA	NA	446	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	69844405	69843439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_69843400_69844400
PB_novel_28987_0	chr4	+	178	1	Intergenic	novelGene_451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70887593	70887771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_70887600_70887800
PB_novel_28988_0	chr4	-	177	1	Intergenic	novelGene_452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	70952559	70952382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_70952400_70952600
PB_novel_28992_1	chr4	+	176	1	Intergenic	novelGene_453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	72125886	72126062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_72125900_72126100
PB_novel_29001_0	chr4	-	176	1	Intergenic	novelGene_454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	74068291	74068115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_74068100_74068300
PB_novel_29005_0	chr4	-	178	1	Intergenic	novelGene_455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	74205459	74205281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_74205300_74205500
PB_novel_29013_0	chr4	-	172	1	Intergenic	novelGene_456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	74772689	74772517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_74772500_74772700
PB_novel_29015_0	chr4	+	176	1	Intergenic	novelGene_457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAATAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	75064792	75064968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_75064800_75065000
PB_novel_29017_0	chr4	+	190	1	Intergenic	novelGene_458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAGAAGAAGAAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	75780904	75781094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_75780900_75781100
PB_novel_29030_0	chr4	+	175	1	Intergenic	novelGene_459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAATCTAA	NA	False	NA	NA	False	NA	NA	NA	81339537	81339712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_81339500_81339700
PB_novel_29034_0	chr4	+	178	1	Intergenic	novelGene_460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATTCACAAGGCA	NA	False	NA	NA	False	NA	NA	NA	81873829	81874007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_81873800_81874000
PB_novel_29036_0	chr4	-	2292	1	Genic_Genomic	ENSMUSG00000008575.18	novel	NA	NA	NA	NA	2151	1110	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	7130	False	NA	NA	False	AATAGA	-31	NA	82415402	82413110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_-_82413100_82415400
PB_novel_29045_0	chr4	+	176	1	Intergenic	novelGene_461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAACTATGTCAAA	NA	False	NA	NA	False	NA	NA	NA	82813953	82814129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_82814000_82814100
PB_novel_29051_0	chr4	+	176	1	Intergenic	novelGene_463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAATAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	83217734	83217910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_83217700_83217900
PB_novel_29052_0	chr4	-	176	1	Intergenic	novelGene_464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	83222533	83222357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_83222400_83222500
PB_novel_29053_0	chr4	+	205	1	Intergenic	novelGene_465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	83231912	83232117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_83231900_83232100
PB_novel_29059_0	chr4	-	172	1	Intergenic	novelGene_466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	83293790	83293618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_83293600_83293800
PB_novel_29062_0	chr4	+	188	1	Intergenic	novelGene_467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCTTTAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	83326985	83327173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_83327000_83327200
PB_novel_29063_0	chr4	+	174	1	Intergenic	novelGene_468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAAAGAGAGAA	5089	False	NA	NA	False	NA	NA	NA	83347344	83347518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_83347300_83347500
PB_novel_29064_0	chr4	-	1994	1	Intergenic	novelGene_469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	83358101	83356107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_83356100_83358100
PB_novel_29067_0	chr4	-	134	1	Intergenic	novelGene_470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83418665	83418531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_83418500_83418700
PB_novel_29068_0	chr4	-	171	1	Intergenic	novelGene_471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83434554	83434383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_83434400_83434600
PB_novel_29071_0	chr4	+	173	1	Intergenic	novelGene_472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83481658	83481831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_83481700_83481800
PB_novel_29085_0	chr4	+	174	1	Intergenic	novelGene_473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAATAGAAGTTA	NA	False	NA	NA	False	NA	NA	NA	85681792	85681966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_85681800_85682000
PB_novel_29097_0	chr4	-	169	1	Intergenic	novelGene_474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAATAAAATAAAATCT	498	False	NA	NA	False	NA	NA	NA	86632664	86632495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_86632500_86632700
PB_novel_29103_0	chr4	+	177	1	Intergenic	novelGene_475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	86721727	86721904	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_86721700_86721900
PB_novel_29104_0	chr4	-	172	1	Intergenic	novelGene_476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATATGT	1901	False	NA	NA	False	NA	NA	NA	86747502	86747330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_86747300_86747500
PB_novel_29104_1	chr4	-	159	2	Antisense	novelGene_ENSMUSG00000038007.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATATGT	NA	False	NA	NA	False	NA	NA	NA	86897243	86747330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_86747470_86897223
PB_novel_29114_0	chr4	+	205	1	Intergenic	novelGene_477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGAAAGCATGGA	NA	False	NA	NA	False	NA	NA	NA	87451928	87452133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_87451900_87452100
PB_novel_29117_0	chr4	+	143	1	Intergenic	novelGene_478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	87960716	87960859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_87960700_87960900
PB_novel_29119_0	chr4	-	181	1	Intergenic	novelGene_479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	88062829	88062648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_88062600_88062800
PB_novel_29125_0	chr4	-	177	1	Intergenic	novelGene_480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	88885628	88885451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_88885500_88885600
PB_novel_29128_0	chr4	-	3540	1	FSM	ENSMUSG00000083989.3	ENSMUST00000120724.3	493	1	-3025	-22	-3025	22	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-22	NA	89083453	89079913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_89079900_89083500
PB_novel_29129_0	chr4	-	1456	1	FSM	ENSMUSG00000088504.4	ENSMUST00000157879.4	140	1	-633	-683	-633	683	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACTCAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	89101990	89100534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_89100500_89102000
PB_novel_29131_0	chr4	+	189	1	Intergenic	novelGene_481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTTTGTTTTAAAATAAAA	2910	False	NA	NA	False	NA	NA	NA	89185202	89185391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_89185200_89185400
PB_novel_29143_0	chr4	+	176	1	Intergenic	novelGene_482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATGTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92489098	92489274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_92489100_92489300
PB_novel_29151_1	chr4	-	177	1	Intergenic	novelGene_484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	186	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94542061	94541884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_94541900_94542100
PB_novel_29157_0	chr4	+	153	1	Intergenic	novelGene_485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94578260	94578413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_94578300_94578400
PB_novel_29162_1	chr4	+	2851	1	Antisense	novelGene_ENSMUSG00000062627.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAGCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94831349	94834200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_94831300_94834200
PB_novel_29174_0	chr4	-	176	1	Intergenic	novelGene_486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAGACATGCA	NA	False	NA	NA	False	NA	NA	NA	98301132	98300956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_98301000_98301100
PB_novel_29189_2	chr4	+	162	1	Intergenic	novelGene_487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAAAAAAAGGCATG	9527	False	NA	NA	False	NA	NA	NA	98743477	98743639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_98743500_98743600
PB_novel_29191_0	chr4	+	159	1	Intergenic	novelGene_488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAATAAATAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98753513	98753672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_98753500_98753700
PB_novel_29192_0	chr4	+	3469	1	NIC	ENSMUSG00000028560.12	novel	3577	9	NA	NA	9	-914	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98812124	98815593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_98812100_98815600
PB_novel_29193_0	chr4	-	175	1	Intergenic	novelGene_489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	2547	False	NA	NA	False	NA	NA	NA	98815149	98814974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_98815000_98815100
PB_novel_29194_0	chr4	-	178	1	Intergenic	novelGene_490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAGATTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	98826786	98826608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_98826600_98826800
PB_novel_29197_0	chr4	+	705	1	Intergenic	novelGene_491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACATAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	98887508	98888213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_98887500_98888200
PB_novel_29201_0	chr4	-	208	1	Antisense	novelGene_ENSMUSG00000087395.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	99006049	99005841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_99005800_99006000
PB_novel_29212_0	chr4	-	180	1	Intergenic	novelGene_495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	99575654	99575474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_99575500_99575700
PB_novel_29215_0	chr4	+	175	1	Intergenic	novelGene_492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAGCAAATAGAT	NA	False	NA	NA	False	NA	NA	NA	99491987	99492162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_99492000_99492200
PB_novel_29217_0	chr4	+	176	1	Intergenic	novelGene_493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99520779	99520955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_99520800_99521000
PB_novel_29218_0	chr4	+	151	1	Intergenic	novelGene_494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99529106	99529257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_99529100_99529300
PB_novel_29224_0	chr4	-	1575	1	Antisense	novelGene_ENSMUSG00000067261.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	99545528	99543953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_99544000_99545500
PB_novel_29231_0	chr4	+	241	1	Intergenic	novelGene_496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CCAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	99681673	99681914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_99681700_99681900
PB_novel_29232_0	chr4	-	170	1	Intergenic	novelGene_497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATATTTTAAAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	99742469	99742299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_99742300_99742500
PB_novel_29238_0	chr4	+	179	1	Intergenic	novelGene_498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACAATT	NA	False	NA	NA	False	NA	NA	NA	100657457	100657636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_100657500_100657600
PB_novel_29248_0	chr4	-	176	1	Intergenic	novelGene_499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAACCACT	NA	False	NA	NA	False	NA	NA	NA	100910361	100910185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_100910200_100910400
PB_novel_29260_0	chr4	+	4230	1	NIC	ENSMUSG00000035212.15	novel	1898	4	NA	NA	5354	-1988	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGCAAAAAAAAAAAAAAAA	2229	False	NA	NA	False	NA	NA	NA	101510343	101514573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_101510300_101514600
PB_novel_29263_0	chr4	+	2460	1	Intergenic	novelGene_500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101711714	101714174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_101711700_101714200
PB_novel_29267_0	chr4	+	172	1	Intergenic	novelGene_501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATCAATCAATCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	101859180	101859352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_101859200_101859400
PB_novel_29269_0	chr4	-	177	1	Intergenic	novelGene_502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCATTCT	2372	False	NA	NA	False	NA	NA	NA	101901319	101901142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_101901100_101901300
PB_novel_29281_0	chr4	+	173	1	Intergenic	novelGene_503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTTAAAAAGAGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	103012293	103012466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_103012300_103012500
PB_novel_29282_0	chr4	-	174	1	Intergenic	novelGene_504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAGAGAAGAGAAGAGA	NA	False	NA	NA	False	NA	NA	NA	103176122	103175948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_103175900_103176100
PB_novel_29284_0	chr4	+	177	1	Intergenic	novelGene_505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103336131	103336308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_103336100_103336300
PB_novel_29285_0	chr4	+	246	1	Intergenic	novelGene_506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACTGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	103422174	103422420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_103422200_103422400
PB_novel_29287_0	chr4	+	168	1	Intergenic	novelGene_507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAAGATCA	NA	False	NA	NA	False	NA	NA	NA	104220178	104220346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_104220200_104220300
PB_novel_29291_0	chr4	+	176	1	Intergenic	novelGene_508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	285	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	104664152	104664328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_104664200_104664300
PB_novel_29294_0	chr4	+	176	1	Intergenic	novelGene_509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATGTATTTAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	104973567	104973743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_104973600_104973700
PB_novel_29303_0	chr4	-	148	1	Intergenic	novelGene_510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAATAATAAGTGCT	NA	False	NA	NA	False	NA	NA	NA	105158507	105158359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_105158400_105158500
PB_novel_29309_0	chr4	-	174	1	Intergenic	novelGene_511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAGAAGAAGAAGGAGG	NA	False	NA	NA	False	NA	NA	NA	106119196	106119022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_106119000_106119200
PB_novel_29326_0	chr4	+	189	1	Intergenic	novelGene_513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	106707112	106707301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_106707100_106707300
PB_novel_29328_0	chr4	+	174	1	Intergenic	novelGene_514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGAG	47	False	NA	NA	False	NA	NA	NA	106733937	106734111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_106733900_106734100
PB_novel_29329_0	chr4	-	178	1	Intergenic	novelGene_515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAATAAAAAAAAAAA	863	False	NA	NA	False	NA	NA	NA	106737157	106736979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_106737000_106737200
PB_novel_29334_0	chr4	-	167	1	Intergenic	novelGene_516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTTTAAAAATGAGATTT	NA	False	NA	NA	False	NA	NA	NA	106763725	106763558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_106763600_106763700
PB_novel_29335_0	chr4	-	179	1	Intergenic	novelGene_517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	106782767	106782588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_106782600_106782800
PB_novel_29337_0	chr4	+	174	1	Intergenic	novelGene_518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAGTA	1094	False	NA	NA	False	NA	NA	NA	106868306	106868480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_106868300_106868500
PB_novel_29347_0	chr4	+	158	1	Intergenic	novelGene_519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAAAATAAAAAAAAAAA	9606	False	NA	NA	False	NA	NA	NA	107078301	107078459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_107078300_107078500
PB_novel_29355_0	chr4	+	175	1	Intergenic	novelGene_520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	107224459	107224634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_107224500_107224600
PB_novel_29356_0	chr4	+	5671	1	NIC	ENSMUSG00000028614.15	novel	4584	18	NA	NA	-5	-12893	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107225243	107230914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_107225200_107230900
PB_novel_29357_0	chr4	-	4620	1	Antisense	novelGene_ENSMUSG00000028614.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107239432	107234812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_107234800_107239400
PB_novel_29362_0	chr4	+	186	1	Intergenic	novelGene_521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	107720103	107720289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_107720100_107720300
PB_novel_29365_0	chr4	+	177	1	Intergenic	novelGene_522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACACATCT	5643	False	NA	NA	False	NA	NA	NA	107789353	107789530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_107789400_107789500
PB_novel_29366_0	chr4	-	177	1	Intergenic	novelGene_523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATCACTGCAAGG	NA	False	NA	NA	False	NA	NA	NA	107791626	107791449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_107791400_107791600
PB_novel_29372_0	chr4	+	177	1	Intergenic	novelGene_524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTTTAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	107942101	107942278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_107942100_107942300
PB_novel_29374_0	chr4	+	189	1	Intergenic	novelGene_525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATGACTG	6557	False	NA	NA	False	NA	NA	NA	107975180	107975369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_107975200_107975400
PB_novel_29379_0	chr4	-	2663	1	Antisense	novelGene_ENSMUSG00000028601.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAACCAAAACAA	2972	False	NA	NA	False	NA	NA	NA	108029111	108026448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_108026400_108029100
PB_novel_29382_0	chr4	+	177	1	Intergenic	novelGene_526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGAATATAAGATT	NA	False	NA	NA	False	NA	NA	NA	108054587	108054764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_108054600_108054800
PB_novel_29383_0	chr4	-	177	1	Intergenic	novelGene_527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	8298	False	NA	NA	False	NA	NA	NA	108063349	108063172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_108063200_108063300
PB_novel_29387_0	chr4	-	176	1	Intergenic	novelGene_528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAATGTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108085142	108084966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_108085000_108085100
PB_novel_29388_0	chr4	+	174	1	Intergenic	novelGene_529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	108132703	108132877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_108132700_108132900
PB_novel_29391_1	chr4	+	173	1	Intergenic	novelGene_531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	108163375	108163548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_108163400_108163500
PB_novel_29392_0	chr4	+	176	1	Intergenic	novelGene_530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAAGAAGGAGGAAGAG	NA	False	NA	NA	False	NA	NA	NA	108160248	108160424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_108160200_108160400
PB_novel_29393_0	chr4	-	152	1	Intergenic	novelGene_532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACATATAATAAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	108163945	108163793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_108163800_108163900
PB_novel_29400_0	chr4	+	187	1	Intergenic	novelGene_533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAGAAACAGA	NA	False	NA	NA	False	NA	NA	NA	108273906	108274093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_108273900_108274100
PB_novel_29402_0	chr4	-	174	1	Intergenic	novelGene_534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAGAAAAGCCACA	NA	False	NA	NA	False	NA	NA	NA	108324586	108324412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_108324400_108324600
PB_novel_29403_0	chr4	-	178	1	Intergenic	novelGene_535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	379	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGTC	NA	False	NA	NA	False	NA	NA	NA	108355758	108355580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_108355600_108355800
PB_novel_29406_0	chr4	-	176	1	Intergenic	novelGene_536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	108393742	108393566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_108393600_108393700
PB_novel_29410_0	chr4	+	175	1	Intergenic	novelGene_537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	9208	False	NA	NA	False	NA	NA	NA	108440586	108440761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_108440600_108440800
PB_novel_29411_4	chr4	-	4887	5	NNC	ENSMUSG00000084968.2	novel	3700	4	NA	NA	18182	1331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	1843	False	NA	NA	False	NA	NA	NA	108458864	108448290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr4_-_108450661_108452514_108452841_108454325_108454674_108456517_108456620_108457123
PB_novel_29413_0	chr4	-	179	1	Intergenic	novelGene_541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTTAAAAAAAAAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	108586704	108586525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_108586500_108586700
PB_novel_29419_0	chr4	+	176	1	Intergenic	novelGene_538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108502383	108502559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_108502400_108502600
PB_novel_29421_0	chr4	+	1943	1	Intergenic	novelGene_539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108566950	108568893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_108567000_108568900
PB_novel_29424_0	chr4	-	166	1	Intergenic	novelGene_540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAATCTAAT	NA	False	NA	NA	False	NA	NA	NA	108582025	108581859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_108581900_108582000
PB_novel_29425_0	chr4	+	175	1	Intergenic	novelGene_542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACTCATGT	NA	False	NA	NA	False	NA	NA	NA	108617274	108617449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_108617300_108617400
PB_novel_29432_0	chr4	+	171	1	Intergenic	novelGene_543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAACAATTGCAA	NA	False	NA	NA	False	NA	NA	NA	108760810	108760981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_108760800_108761000
PB_novel_29439_0	chr4	+	174	1	Intergenic	novelGene_544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAATCTAAAAAA	5789	False	NA	NA	False	NA	NA	NA	108948141	108948315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_108948100_108948300
PB_novel_29445_0	chr4	-	176	1	Intergenic	novelGene_546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	109157006	109156830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_109156800_109157000
PB_novel_29450_0	chr4	+	158	1	Intergenic	novelGene_547	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109529535	109529693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_109529500_109529700
PB_novel_29452_0	chr4	-	2412	1	FSM	ENSMUSG00000083995.2	ENSMUST00000120597.2	404	1	-1204	-804	-1204	804	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	109613218	109610806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr4_-_109610800_109613200
PB_novel_29455_0	chr4	+	175	1	Intergenic	novelGene_548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAATTTAAATCAAA	NA	False	NA	NA	False	NA	NA	NA	109689356	109689531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_109689400_109689500
PB_novel_29461_0	chr4	+	157	1	Intergenic	novelGene_549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAATAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	110317000	110317157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_110317000_110317200
PB_novel_29465_0	chr4	+	163	1	Intergenic	novelGene_550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	111505548	111505711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_111505500_111505700
PB_novel_29472_0	chr4	-	185	1	Intergenic	novelGene_551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAGCCCTGAAGGA	NA	False	NA	NA	False	NA	NA	NA	114365675	114365490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_114365500_114365700
PB_novel_29475_0	chr4	-	173	1	Intergenic	novelGene_552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	114821355	114821182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_114821200_114821400
PB_novel_29481_2	chr4	+	177	1	Intergenic	novelGene_553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	114896980	114897157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_114897000_114897200
PB_novel_29485_1	chr4	+	177	1	Intergenic	novelGene_554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	115649678	115649855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_115649700_115649900
PB_novel_29489_0	chr4	+	176	1	Intergenic	novelGene_555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAATGTGAATC	4440	False	NA	NA	False	NA	NA	NA	115804682	115804858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_115804700_115804900
PB_novel_29493_0	chr4	+	186	1	Intergenic	novelGene_556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	115899067	115899253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_115899100_115899300
PB_novel_29501_0	chr4	+	177	1	Intergenic	novelGene_557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	115965211	115965388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_115965200_115965400
PB_novel_29503_1	chr4	+	2517	2	Antisense	novelGene_ENSMUSG00000028702.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115977280	115979992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_115979489_115979683
PB_novel_29512_0	chr4	+	176	1	Intergenic	novelGene_558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	116053027	116053203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116053000_116053200
PB_novel_29516_0	chr4	-	175	1	Intergenic	novelGene_559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	116094149	116093974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_116094000_116094100
PB_novel_29517_0	chr4	-	164	1	Intergenic	novelGene_560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116094909	116094745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_116094700_116094900
PB_novel_29518_0	chr4	+	174	1	Intergenic	novelGene_561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	8288	False	NA	NA	False	NA	NA	NA	116132119	116132293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116132100_116132300
PB_novel_29525_0	chr4	+	159	1	Intergenic	novelGene_562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAATAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	116266511	116266670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116266500_116266700
PB_novel_29529_0	chr4	-	152	1	Intergenic	novelGene_563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	116376620	116376468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_116376500_116376600
PB_novel_29530_0	chr4	+	188	1	Intergenic	novelGene_564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACATTTAAAA	NA	False	NA	NA	False	NA	NA	NA	116377078	116377266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116377100_116377300
PB_novel_29538_0	chr4	+	176	2	Antisense	novelGene_ENSMUSG00000028693.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAATAAAAAATAAA	4213	False	NA	NA	False	NA	NA	NA	116452894	116461054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_116452992_116460975
PB_novel_29539_1	chr4	+	245	1	Intergenic	novelGene_565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	418	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116487097	116487342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116487100_116487300
PB_novel_29550_0	chr4	+	155	1	Intergenic	novelGene_566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116497365	116497520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116497400_116497500
PB_novel_29555_0	chr4	-	191	1	Intergenic	novelGene_567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAACAAAAAGGCAAC	NA	False	NA	NA	False	NA	NA	NA	116532834	116532643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_116532600_116532800
PB_novel_29556_5	chr4	-	175	2	Antisense	novelGene_ENSMUSG00002075917.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	45	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATCTCAATT	9987	False	NA	NA	False	NA	NA	NA	116641629	116553504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_116553631_116641580
PB_novel_29567_1	chr4	-	177	1	Intergenic	novelGene_576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	116718643	116718466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_116718500_116718600
PB_novel_29569_1	chr4	+	175	1	Intergenic	novelGene_568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAGAA	5466	False	NA	NA	False	NA	NA	NA	116602246	116602421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116602200_116602400
PB_novel_29572_0	chr4	+	170	1	Intergenic	novelGene_569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACGACT	NA	False	NA	NA	False	NA	NA	NA	116632423	116632593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116632400_116632600
PB_novel_29573_0	chr4	-	172	1	Intergenic	novelGene_570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTAAAAAAAAAAAAAC	9988	False	NA	NA	False	NA	NA	NA	116641628	116641456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_116641500_116641600
PB_novel_29574_0	chr4	+	206	1	Intergenic	novelGene_571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAGAAAGAAAAAAA	1337	False	NA	NA	False	NA	NA	NA	116652858	116653064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116652900_116653100
PB_novel_29575_0	chr4	+	176	1	Intergenic	novelGene_572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	5049	False	NA	NA	False	NA	NA	NA	116656570	116656746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116656600_116656700
PB_novel_29579_0	chr4	-	174	1	Intergenic	novelGene_573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	116686246	116686072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_116686100_116686200
PB_novel_29581_0	chr4	-	155	1	Intergenic	novelGene_574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAGTAAATCAAAAA	NA	False	NA	NA	False	NA	NA	NA	116708603	116708448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_116708400_116708600
PB_novel_29582_0	chr4	+	175	1	Intergenic	novelGene_575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGAATATAACATG	3601	False	NA	NA	False	NA	NA	NA	116715504	116715679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116715500_116715700
PB_novel_29583_0	chr4	+	181	1	Intergenic	novelGene_577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAATCTTA	1601	False	NA	NA	False	NA	NA	NA	116722673	116722854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116722700_116722900
PB_novel_29585_0	chr4	-	152	1	Intergenic	novelGene_578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	116741007	116740855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_116740900_116741000
PB_novel_29599_0	chr4	+	181	1	Intergenic	novelGene_579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAATATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116916755	116916936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_116916800_116916900
PB_novel_29606_0	chr4	-	179	1	Intergenic	novelGene_580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAATAAAAAA	8288	False	NA	NA	False	NA	NA	NA	116994732	116994553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_116994600_116994700
PB_novel_29609_0	chr4	+	175	1	Intergenic	novelGene_581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117009198	117009373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_117009200_117009400
PB_novel_29611_0	chr4	-	176	1	Intergenic	novelGene_582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATCGGATAC	NA	False	NA	NA	False	NA	NA	NA	117014536	117014360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_117014400_117014500
PB_novel_29612_0	chr4	+	170	1	Intergenic	novelGene_583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATTTTAAAAAATGAAGC	NA	False	NA	NA	False	NA	NA	NA	117018074	117018244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_117018100_117018200
PB_novel_29627_0	chr4	+	176	1	Intergenic	novelGene_584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAATTATCAATTAG	NA	False	NA	NA	False	NA	NA	NA	117245442	117245618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_117245400_117245600
PB_novel_29629_0	chr4	+	2410	1	Intergenic	novelGene_585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117291218	117293628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_117291200_117293600
PB_novel_29630_0	chr4	-	3532	1	Intergenic	novelGene_586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117320700	117317168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_117317200_117320700
PB_novel_29631_0	chr4	-	184	1	Intergenic	novelGene_587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACATG	NA	False	NA	NA	False	NA	NA	NA	117326248	117326064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_117326100_117326200
PB_novel_29633_0	chr4	-	178	1	Intergenic	novelGene_588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117513469	117513291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_117513300_117513500
PB_novel_29645_0	chr4	-	158	1	Intergenic	novelGene_589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAAAAAAACATC	NA	False	NA	NA	False	NA	NA	NA	117668777	117668619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_117668600_117668800
PB_novel_29652_1	chr4	+	4132	2	Antisense	novelGene_ENSMUSG00000028538.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGCCAAAAAAAAAAAAAC	4559	False	NA	NA	False	NA	NA	NA	117853927	117858099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_117856468_117856507
PB_novel_29653_0	chr4	+	175	1	Intergenic	novelGene_590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAGAGAGAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	117899199	117899374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_117899200_117899400
PB_novel_29662_0	chr4	+	180	1	Intergenic	novelGene_591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	118025321	118025501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_118025300_118025500
PB_novel_29663_0	chr4	+	177	1	Intergenic	novelGene_592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	118034888	118035065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_118034900_118035100
PB_novel_29665_0	chr4	-	173	1	Intergenic	novelGene_593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATGTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	118054870	118054697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_118054700_118054900
PB_novel_29666_0	chr4	+	174	1	Intergenic	novelGene_594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAATATCATGACC	NA	False	NA	NA	False	NA	NA	NA	118057569	118057743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_118057600_118057700
PB_novel_29678_0	chr4	-	173	1	Intergenic	novelGene_595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCTTTAAAAAAAAAAAAAG	2085	False	NA	NA	False	NA	NA	NA	118407165	118406992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_118407000_118407200
PB_novel_29679_0	chr4	-	175	1	Intergenic	novelGene_596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATTATAAAAAGA	8200	False	NA	NA	False	NA	NA	NA	118449312	118449137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_118449100_118449300
PB_novel_29694_0	chr4	+	173	1	Intergenic	novelGene_597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAAAAAAAGAAGT	4171	False	NA	NA	False	NA	NA	NA	119124607	119124780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_119124600_119124800
PB_novel_29696_0	chr4	+	184	1	Intergenic	novelGene_598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	467	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	647	False	NA	NA	False	NA	NA	NA	119137710	119137894	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_119137700_119137900
PB_novel_29703_0	chr4	+	1661	1	Antisense	novelGene_ENSMUSG00000060288.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119164486	119166147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_119164500_119166100
PB_novel_29707_0	chr4	+	174	1	Intergenic	novelGene_599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	286	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	-53	True	NA	NA	NA	119227056	119227230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_119227100_119227200
PB_novel_29712_0	chr4	-	173	1	Intergenic	novelGene_600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	119367499	119367326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_119367300_119367500
PB_novel_29714_0	chr4	+	176	1	Intergenic	novelGene_601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	647	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	119390224	119390400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_119390200_119390400
PB_novel_29726_0	chr4	+	176	1	Intergenic	novelGene_602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAGACATGAATT	789	False	NA	NA	False	NA	NA	NA	120292137	120292313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_120292100_120292300
PB_novel_29731_0	chr4	-	173	1	Intergenic	novelGene_603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120346203	120346030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_120346000_120346200
PB_novel_29735_0	chr4	+	175	1	Intergenic	novelGene_604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAACAATGTAAA	NA	False	NA	NA	False	NA	NA	NA	120419740	120419915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_120419700_120419900
PB_novel_29737_1	chr4	-	171	1	Intergenic	novelGene_605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	120457531	120457360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_120457400_120457500
PB_novel_29739_0	chr4	-	197	1	Intergenic	novelGene_606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTAAAAAAAAAAGAGTAA	NA	False	NA	NA	False	NA	NA	NA	120548367	120548170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_120548200_120548400
PB_novel_29741_0	chr4	+	177	1	Intergenic	novelGene_607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGAGTGGGAG	NA	False	NA	NA	False	NA	NA	NA	120660588	120660765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_120660600_120660800
PB_novel_29744_0	chr4	+	168	1	Intergenic	novelGene_608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAATTGGCATAAA	NA	False	NA	NA	False	NA	NA	NA	120683456	120683624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_120683500_120683600
PB_novel_29748_0	chr4	+	172	1	Intergenic	novelGene_609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATTAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	120807698	120807870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_120807700_120807900
PB_novel_29751_1	chr4	-	176	1	Intergenic	novelGene_610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120856056	120855880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_120855900_120856100
PB_novel_29756_0	chr4	+	175	1	Intergenic	novelGene_611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAATTAAAA	3711	False	NA	NA	False	NA	NA	NA	120928855	120929030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_120928900_120929000
PB_novel_29758_0	chr4	-	208	1	Intergenic	novelGene_612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAACAAAAAA	8632	False	NA	NA	False	AAAAAG	-17	NA	120971463	120971255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_120971300_120971500
PB_novel_29759_0	chr4	-	4560	1	Genic_Genomic	ENSMUSG00000049878.14	novel	NA	NA	NA	NA	43046	4444	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTATGG	6032	False	NA	NA	False	NA	NA	NA	121002685	120998125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_-_120998100_121002700
PB_novel_29760_0	chr4	-	1834	1	Intergenic	novelGene_613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5518	False	NA	NA	False	NA	NA	NA	121011713	121009879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_121009900_121011700
PB_novel_29770_0	chr4	+	175	1	Intergenic	novelGene_614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAGAAGAAGAAGGA	1447	False	NA	NA	False	NA	NA	NA	122887712	122887887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_122887700_122887900
PB_novel_29772_0	chr4	-	178	1	Intergenic	novelGene_615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	179	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8757	False	NA	NA	False	NA	NA	NA	122918703	122918525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_122918500_122918700
PB_novel_29775_0	chr4	+	174	1	Intergenic	novelGene_616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGATATTAA	NA	False	NA	NA	False	NA	NA	NA	122952250	122952424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_122952200_122952400
PB_novel_29783_0	chr4	-	177	1	Intergenic	novelGene_617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	123162497	123162320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_123162300_123162500
PB_novel_29784_2	chr4	+	178	1	Intergenic	novelGene_619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	492	False	NA	NA	False	NA	NA	NA	123184222	123184400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_123184200_123184400
PB_novel_29785_1	chr4	+	190	1	Intergenic	novelGene_618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAAGAAGTGCTCAG	NA	False	NA	NA	False	NA	NA	NA	123163802	123163992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_123163800_123164000
PB_novel_29790_0	chr4	-	159	1	Intergenic	novelGene_620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	123225190	123225031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_123225000_123225200
PB_novel_29793_0	chr4	+	841	1	Intergenic	novelGene_621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	123272922	123273763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_123272900_123273800
PB_novel_29794_0	chr4	+	2565	2	Antisense	novelGene_ENSMUSG00000028649.22_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	123271092	123273761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_123272348_123272451
PB_novel_29800_3	chr4	+	180	1	Intergenic	novelGene_623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123397741	123397921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_123397700_123397900
PB_novel_29801_0	chr4	-	178	1	Intergenic	novelGene_622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	8290	False	NA	NA	False	NA	NA	NA	123379066	123378888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_123378900_123379100
PB_novel_29807_0	chr4	-	176	1	Intergenic	novelGene_624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAAATGAAGG	8962	False	NA	NA	False	NA	NA	NA	123477456	123477280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_123477300_123477500
PB_novel_29815_0	chr4	+	162	1	Intergenic	novelGene_625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	123553457	123553619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_123553500_123553600
PB_novel_29819_0	chr4	-	3515	1	Genic_Genomic	ENSMUSG00000028649.22	novel	NA	NA	NA	NA	-2943	-144909	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	123581096	123577581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_-_123577600_123581100
PB_novel_29837_0	chr4	-	176	1	Intergenic	novelGene_626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5786	False	NA	NA	False	NA	NA	NA	123712417	123712241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_123712200_123712400
PB_novel_29840_0	chr4	-	742	1	Intergenic	novelGene_627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123816041	123815299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_123815300_123816000
PB_novel_29842_0	chr4	+	175	1	Intergenic	novelGene_628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGAAATTTGA	4315	False	NA	NA	False	NA	NA	NA	123952296	123952471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_123952300_123952500
PB_novel_29850_0	chr4	+	116	1	Intergenic	novelGene_629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAATAAGGTAAAGAA	NA	False	NA	NA	False	NA	NA	NA	124485124	124485240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_124485100_124485200
PB_novel_29855_0	chr4	-	171	1	Intergenic	novelGene_630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGACACACAC	NA	False	NA	NA	False	NA	NA	NA	124596893	124596722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_124596700_124596900
PB_novel_29857_0	chr4	+	179	1	Intergenic	novelGene_631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGAATTACAG	NA	False	NA	NA	False	NA	NA	NA	124607865	124608044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_124607900_124608000
PB_novel_29858_0	chr4	-	173	1	Intergenic	novelGene_632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	124615189	124615016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_124615000_124615200
PB_novel_29859_0	chr4	-	175	1	Intergenic	novelGene_633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTAAAAAAAAAGAGCCT	NA	False	NA	NA	False	NA	NA	NA	124656471	124656296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_124656300_124656500
PB_novel_29862_0	chr4	-	145	1	Intergenic	novelGene_634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124719766	124719621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_124719600_124719800
PB_novel_29868_0	chr4	+	204	1	Intergenic	novelGene_635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAAGAAAGT	9608	False	NA	NA	False	NA	NA	NA	124761236	124761440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_124761200_124761400
PB_novel_29870_0	chr4	+	177	1	Intergenic	novelGene_636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	124766018	124766195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_124766000_124766200
PB_novel_29873_0	chr4	+	174	1	Intergenic	novelGene_637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGAGTGT	NA	False	NA	NA	False	NA	NA	NA	124770442	124770616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_124770400_124770600
PB_novel_29875_0	chr4	-	182	1	Intergenic	novelGene_638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	124795051	124794869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_124794900_124795100
PB_novel_29876_0	chr4	+	148	1	Intergenic	novelGene_639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	446	False	NA	NA	False	NA	NA	NA	124799301	124799449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_124799300_124799400
PB_novel_29885_0	chr4	-	174	1	Intergenic	novelGene_640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAATGAACTT	NA	False	NA	NA	False	NA	NA	NA	124982413	124982239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_124982200_124982400
PB_novel_29886_0	chr4	-	174	1	Intergenic	novelGene_641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACGAG	NA	False	NA	NA	False	NA	NA	NA	124989282	124989108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_124989100_124989300
PB_novel_29888_0	chr4	-	179	1	Intergenic	novelGene_642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAATAAAAATATA	NA	False	NA	NA	False	NA	NA	NA	125048485	125048306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_125048300_125048500
PB_novel_29898_0	chr4	+	176	1	Intergenic	novelGene_643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4419	False	NA	NA	False	NA	NA	NA	125449775	125449951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_125449800_125450000
PB_novel_29911_0	chr4	-	237	1	Intergenic	novelGene_644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATCTTTAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125940312	125940075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_125940100_125940300
PB_novel_29914_0	chr4	-	177	1	Intergenic	novelGene_645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	125974064	125973887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_125973900_125974100
PB_novel_29915_0	chr4	-	177	1	Intergenic	novelGene_646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATTACG	NA	False	NA	NA	False	NA	NA	NA	125990020	125989843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_125989800_125990000
PB_novel_29924_0	chr4	-	115	1	Intergenic	novelGene_647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	126116422	126116307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_126116300_126116400
PB_novel_29925_0	chr4	+	174	1	Intergenic	novelGene_648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGACAAAA	NA	False	NA	NA	False	NA	NA	NA	126116736	126116910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126116700_126116900
PB_novel_29927_0	chr4	+	173	1	Intergenic	novelGene_649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAATGAACG	1784	False	NA	NA	False	NA	NA	NA	126118940	126119113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126118900_126119100
PB_novel_29936_0	chr4	+	184	1	Intergenic	novelGene_650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	126306986	126307170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126307000_126307200
PB_novel_29938_0	chr4	-	2399	1	Genic_Genomic	ENSMUSG00000028842.16	novel	NA	NA	NA	NA	-1470	-20932	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	894	False	NA	NA	False	NA	NA	NA	126324819	126322420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_-_126322400_126324800
PB_novel_29939_0	chr4	+	3383	2	Antisense	novelGene_ENSMUSG00000041530.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAGCCAGGCA	NA	False	NA	NA	False	NA	NA	NA	126337159	126340742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_126339365_126339564
PB_novel_29940_0	chr4	-	175	1	Intergenic	novelGene_651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAACAT	NA	False	NA	NA	False	NA	NA	NA	126339557	126339382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_126339400_126339600
PB_novel_29943_0	chr4	+	175	1	Intergenic	novelGene_652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAATATTTATATAAATA	NA	False	NA	NA	False	NA	NA	NA	126440757	126440932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126440800_126440900
PB_novel_29949_0	chr4	-	180	1	Intergenic	novelGene_653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	126498881	126498701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_126498700_126498900
PB_novel_29950_0	chr4	+	171	1	Intergenic	novelGene_654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGTAAAAAACAGATCTAG	7259	False	NA	NA	False	NA	NA	NA	126503107	126503278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126503100_126503300
PB_novel_29952_0	chr4	+	183	1	Intergenic	novelGene_655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAATAAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	126534837	126535020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126534800_126535000
PB_novel_29954_0	chr4	+	208	1	Intergenic	novelGene_656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	1141	False	NA	NA	False	NA	NA	NA	126567183	126567391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126567200_126567400
PB_novel_29957_0	chr4	-	180	1	Intergenic	novelGene_657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTACAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	126655279	126655099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_126655100_126655300
PB_novel_29958_0	chr4	+	173	1	Intergenic	novelGene_658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATAGATAAATCTTT	857	False	NA	NA	False	NA	NA	NA	126678556	126678729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126678600_126678700
PB_novel_29960_0	chr4	-	168	1	Intergenic	novelGene_659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAATAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	126690132	126689964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_126690000_126690100
PB_novel_29970_1	chr4	+	192	1	Intergenic	novelGene_660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATTATATAC	NA	False	NA	NA	False	NA	NA	NA	126793008	126793200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126793000_126793200
PB_novel_29972_0	chr4	-	175	1	Intergenic	novelGene_661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAGACTAGACAT	NA	False	NA	NA	False	NA	NA	NA	126807379	126807204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_126807200_126807400
PB_novel_29973_0	chr4	+	176	1	Intergenic	novelGene_662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	4186	False	NA	NA	False	NA	NA	NA	126812772	126812948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126812800_126812900
PB_novel_29991_0	chr4	+	176	1	Intergenic	novelGene_663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAATAAATACA	NA	False	NA	NA	False	NA	NA	NA	126882851	126883027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126882900_126883000
PB_novel_29999_0	chr4	+	162	1	Intergenic	novelGene_664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATAAATCTTTATTTAA	NA	False	NA	NA	False	NA	NA	NA	126912754	126912916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126912800_126912900
PB_novel_30004_0	chr4	-	175	1	Intergenic	novelGene_665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATAGGGCTGGA	NA	False	NA	NA	False	NA	NA	NA	126934818	126934643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_126934600_126934800
PB_novel_30010_0	chr4	-	177	1	Intergenic	novelGene_666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	229	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAGAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	126970725	126970548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_126970500_126970700
PB_novel_30013_1	chr4	+	177	1	Intergenic	novelGene_667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	392	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	126993290	126993467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_126993300_126993500
PB_novel_30019_0	chr4	+	173	1	Intergenic	novelGene_668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAGAAGTCTAAA	426	False	NA	NA	False	NA	NA	NA	127030598	127030771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_127030600_127030800
PB_novel_30020_0	chr4	+	188	1	Intergenic	novelGene_669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAACAAACAAAAAAA	5908	False	NA	NA	False	NA	NA	NA	127041581	127041769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_127041600_127041800
PB_novel_30036_0	chr4	+	186	1	Intergenic	novelGene_670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTTAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	127343302	127343488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_127343300_127343500
PB_novel_30037_0	chr4	-	171	1	Intergenic	novelGene_671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCTTTTTAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	127394589	127394418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_127394400_127394600
PB_novel_30042_0	chr4	+	175	1	Intergenic	novelGene_672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	128006107	128006282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_128006100_128006300
PB_novel_30047_0	chr4	+	1682	1	NIC	ENSMUSG00000028796.18	novel	3949	15	NA	NA	58	-49186	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	128548588	128550270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_128548600_128550300
PB_novel_30049_0	chr4	-	177	1	Intergenic	novelGene_673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3474	False	NA	NA	False	NA	NA	NA	128741632	128741455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_128741500_128741600
PB_novel_30054_0	chr4	-	156	1	Intergenic	novelGene_674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAAATAGAT	4208	False	NA	NA	False	NA	NA	NA	128931701	128931545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_128931500_128931700
PB_novel_30057_0	chr4	-	5370	1	NIC	ENSMUSG00000085085.3	novel	1009	2	NA	NA	46	-2471	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	128951730	128946360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_128946400_128951700
PB_novel_30060_1	chr4	-	155	1	Intergenic	novelGene_680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTTAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	129065785	129065630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129065600_129065800
PB_novel_30061_0	chr4	-	2553	1	Antisense	novelGene_ENSMUSG00000028793.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128968508	128965955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_128966000_128968500
PB_novel_30063_0	chr4	-	176	1	Intergenic	novelGene_675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128995770	128995594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_128995600_128995800
PB_novel_30064_0	chr4	+	176	1	Intergenic	novelGene_676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3371	False	NA	NA	False	NA	NA	NA	128996684	128996860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_128996700_128996900
PB_novel_30065_0	chr4	+	170	2	Intergenic	novelGene_678	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	75	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	5259	False	NA	NA	False	NA	NA	NA	129040920	129041323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129041063_129041295
PB_novel_30065_2	chr4	+	176	1	Intergenic	novelGene_677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5258	False	NA	NA	False	NA	NA	NA	129040919	129041095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129040900_129041100
PB_novel_30068_0	chr4	+	172	1	Intergenic	novelGene_679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAACAAAAACAAAA	3025	False	NA	NA	False	NA	NA	NA	129061355	129061527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129061400_129061500
PB_novel_30069_0	chr4	+	329	1	Intergenic	novelGene_681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAGA	701	False	NA	NA	False	NA	NA	NA	129072864	129073193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129072900_129073200
PB_novel_30072_0	chr4	+	288	1	Intergenic	novelGene_682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAATAAACTG	7864	False	NA	NA	False	AATAAA	-9	NA	129091920	129092208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129091900_129092200
PB_novel_30076_0	chr4	-	180	1	Intergenic	novelGene_683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	129149791	129149611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129149600_129149800
PB_novel_30077_0	chr4	+	178	1	Intergenic	novelGene_684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGCCAATAC	NA	False	NA	NA	False	NA	NA	NA	129156425	129156603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129156400_129156600
PB_novel_30079_0	chr4	+	226	1	Intergenic	novelGene_685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	129172918	129173144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129172900_129173100
PB_novel_30081_3	chr4	-	175	1	Intergenic	novelGene_686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAGAGAGCAGCACAGA	NA	False	NA	NA	False	NA	NA	NA	129194189	129194014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129194000_129194200
PB_novel_30085_0	chr4	+	176	1	Intergenic	novelGene_687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	618	False	NA	NA	False	NA	NA	NA	129213358	129213534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129213400_129213500
PB_novel_30092_0	chr4	-	786	1	Intergenic	novelGene_688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	8037	False	NA	NA	False	NA	NA	NA	129240427	129239641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129239600_129240400
PB_novel_30095_0	chr4	+	177	1	Intergenic	novelGene_689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	129250520	129250697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129250500_129250700
PB_novel_30098_0	chr4	+	176	1	Intergenic	novelGene_690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4869	False	NA	NA	False	NA	NA	NA	129260486	129260662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129260500_129260700
PB_novel_30100_0	chr4	+	172	1	Intergenic	novelGene_691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	129273136	129273308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129273100_129273300
PB_novel_30101_0	chr4	-	177	1	Intergenic	novelGene_692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGATTCT	NA	False	NA	NA	False	NA	NA	NA	129277898	129277721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129277700_129277900
PB_novel_30102_0	chr4	+	173	1	Intergenic	novelGene_693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129281442	129281615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129281400_129281600
PB_novel_30107_0	chr4	-	204	1	Intergenic	novelGene_694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129312856	129312652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129312700_129312900
PB_novel_30108_0	chr4	+	173	1	Intergenic	novelGene_695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	1721	False	NA	NA	False	NA	NA	NA	129314297	129314470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129314300_129314500
PB_novel_30110_0	chr4	-	174	1	Intergenic	novelGene_696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	129344519	129344345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129344300_129344500
PB_novel_30111_0	chr4	-	135	1	Intergenic	novelGene_697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	129344869	129344734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129344700_129344900
PB_novel_30114_0	chr4	+	169	1	Intergenic	novelGene_698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	3358	False	NA	NA	False	NA	NA	NA	129386102	129386271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129386100_129386300
PB_novel_30123_0	chr4	+	169	1	Intergenic	novelGene_699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	8226	False	NA	NA	False	NA	NA	NA	129499522	129499691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129499500_129499700
PB_novel_30124_1	chr4	+	182	1	Intergenic	novelGene_700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	129531518	129531700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129531500_129531700
PB_novel_30130_0	chr4	+	166	1	Intergenic	novelGene_701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAACAAACCACAG	NA	False	NA	NA	False	NA	NA	NA	129567831	129567997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129567800_129568000
PB_novel_30133_0	chr4	+	162	1	Intergenic	novelGene_702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAATTTAAAAAAAAA	3160	False	NA	NA	False	NA	NA	NA	129578803	129578965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129578800_129579000
PB_novel_30135_0	chr4	+	3693	1	Antisense	novelGene_ENSMUSG00000028790.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGAAAAGAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-13	NA	129597298	129600991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_129597300_129601000
PB_novel_30141_0	chr4	-	155	1	Intergenic	novelGene_703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAATAAATAAATCTT	5693	False	NA	NA	False	NA	NA	NA	129656770	129656615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129656600_129656800
PB_novel_30143_0	chr4	+	161	1	Intergenic	novelGene_704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	129674908	129675069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129674900_129675100
PB_novel_30144_0	chr4	-	175	1	Intergenic	novelGene_705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAACAAAAAACAAA	4582	False	NA	NA	False	NA	NA	NA	129680158	129679983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129680000_129680200
PB_novel_30148_0	chr4	-	170	1	Intergenic	novelGene_706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	614	False	NA	NA	False	NA	NA	NA	129696240	129696070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129696100_129696200
PB_novel_30149_0	chr4	-	173	1	Intergenic	novelGene_707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACCAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	129699969	129699796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129699800_129700000
PB_novel_30150_0	chr4	-	181	1	Intergenic	novelGene_708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129704533	129704352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129704400_129704500
PB_novel_30151_2	chr4	+	1823	1	NIC	ENSMUSG00000028788.15	novel	3646	6	NA	NA	5	9527	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAGTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129714018	129715841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_129714000_129715800
PB_novel_30152_0	chr4	-	3742	1	Intergenic	novelGene_709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTTTACGC	NA	False	NA	NA	False	ATTAAA	-31	NA	129718774	129715032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_129715000_129718800
PB_novel_30157_0	chr4	+	769	2	Intergenic	novelGene_710	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	5416	False	NA	NA	False	NA	NA	NA	129777971	129779186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129778259_129778704
PB_novel_30158_0	chr4	+	181	1	Intergenic	novelGene_711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	239	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	6450	False	NA	NA	False	NA	NA	NA	129779005	129779186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_129779000_129779200
PB_novel_30163_0	chr4	-	173	1	Intergenic	novelGene_712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACCAACAAC	6759	False	NA	NA	False	NA	NA	NA	130132396	130132223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_130132200_130132400
PB_novel_30164_0	chr4	+	194	1	Intergenic	novelGene_713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	130149684	130149878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_130149700_130149900
PB_novel_30170_0	chr4	+	172	1	Intergenic	novelGene_714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130235071	130235243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_130235100_130235200
PB_novel_30173_0	chr4	+	191	1	Intergenic	novelGene_715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130259270	130259461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_130259300_130259500
PB_novel_30176_0	chr4	-	176	1	Intergenic	novelGene_716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130312682	130312506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_130312500_130312700
PB_novel_30177_2	chr4	-	174	1	Intergenic	novelGene_717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGGGGCAAA	NA	False	NA	NA	False	NA	NA	NA	130317833	130317659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_130317700_130317800
PB_novel_30181_1	chr4	-	559	2	Intergenic	novelGene_719	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAAACCAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	130362533	130359667	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_130360111_130362417
PB_novel_30183_0	chr4	-	170	1	Intergenic	novelGene_718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATTTATTTAAA	4936	False	NA	NA	False	NA	NA	NA	130355004	130354834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_130354800_130355000
PB_novel_30188_0	chr4	-	182	1	Intergenic	novelGene_720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130364764	130364582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_130364600_130364800
PB_novel_30189_0	chr4	-	320	1	Intergenic	novelGene_721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130369676	130369356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_130369400_130369700
PB_novel_30191_0	chr4	+	172	1	Intergenic	novelGene_722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAAAAATGAATGT	4335	False	NA	NA	False	NA	NA	NA	130371196	130371368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_130371200_130371400
PB_novel_30203_0	chr4	-	5626	1	Intergenic	novelGene_723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAGACAAAACAAAA	NA	False	NA	NA	False	ATTAAA	-11	NA	130452831	130447205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_130447200_130452800
PB_novel_30216_0	chr4	+	177	1	Intergenic	novelGene_724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAATAT	791	False	NA	NA	False	NA	NA	NA	130906043	130906220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_130906000_130906200
PB_novel_30220_0	chr4	+	188	1	Intergenic	novelGene_725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTAAAACAAAATAATTTT	NA	False	NA	NA	False	NA	NA	NA	131264406	131264594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_131264400_131264600
PB_novel_30235_0	chr4	-	170	1	Intergenic	novelGene_726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGCTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	131760797	131760627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_131760600_131760800
PB_novel_30239_0	chr4	-	166	1	Intergenic	novelGene_727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	131877387	131877221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_131877200_131877400
PB_novel_30240_0	chr4	+	183	1	Intergenic	novelGene_728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAAGATAATAGATTAC	NA	False	NA	NA	False	NA	NA	NA	131888787	131888970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_131888800_131889000
PB_novel_30243_0	chr4	+	171	1	Intergenic	novelGene_729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATTTAAAAAAAAATATAT	NA	False	NA	NA	False	NA	NA	NA	131905150	131905321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_131905200_131905300
PB_novel_30258_0	chr4	-	174	1	Intergenic	novelGene_730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAACAGTTGAAGA	NA	False	NA	NA	False	NA	NA	NA	131996945	131996771	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_131996800_131996900
PB_novel_30266_0	chr4	+	172	1	Intergenic	novelGene_731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	132042698	132042870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132042700_132042900
PB_novel_30268_0	chr4	+	176	1	Intergenic	novelGene_732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132063793	132063969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132063800_132064000
PB_novel_30271_0	chr4	-	177	1	Intergenic	novelGene_733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132090069	132089892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132089900_132090100
PB_novel_30272_0	chr4	-	175	1	Intergenic	novelGene_734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAATTTTAAAAATG	NA	False	NA	NA	False	NA	NA	NA	132090464	132090289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132090300_132090500
PB_novel_30274_0	chr4	+	178	1	Intergenic	novelGene_735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	132099026	132099204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132099000_132099200
PB_novel_30279_0	chr4	+	166	1	Intergenic	novelGene_736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTAAAAATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	132122704	132122870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132122700_132122900
PB_novel_30286_2	chr4	+	326	2	Intergenic	novelGene_737	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGTAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132153767	132255098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132153953_132254957
PB_novel_30287_0	chr4	-	176	1	Intergenic	novelGene_738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGTGAACACA	NA	False	NA	NA	False	NA	NA	NA	132156145	132155969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132156000_132156100
PB_novel_30289_0	chr4	-	182	1	Intergenic	novelGene_739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAAACAAAAAAA	9532	False	NA	NA	False	NA	NA	NA	132177060	132176878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132176900_132177100
PB_novel_30290_0	chr4	+	174	1	Intergenic	novelGene_740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGGAGACA	NA	False	NA	NA	False	NA	NA	NA	132212860	132213034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132212900_132213000
PB_novel_30291_0	chr4	-	175	1	Intergenic	novelGene_741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATAAAATAA	6017	False	NA	NA	False	NA	NA	NA	132214452	132214277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132214300_132214500
PB_novel_30296_0	chr4	+	175	1	Intergenic	novelGene_742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	132246100	132246275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132246100_132246300
PB_novel_30299_2	chr4	+	179	1	Intergenic	novelGene_744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGATTTGTTA	NA	False	NA	NA	False	NA	NA	NA	132254930	132255109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132254900_132255100
PB_novel_30299_3	chr4	+	210	2	Intergenic	novelGene_743	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAATTAATGAAAATA	NA	False	NA	NA	False	NA	NA	NA	132254929	132255830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132255121_132255811
PB_novel_30302_0	chr4	+	342	1	Intergenic	novelGene_745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	132284486	132284828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132284500_132284800
PB_novel_30309_0	chr4	+	159	1	Intergenic	novelGene_746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAATAAATAAATC	2394	False	NA	NA	False	NA	NA	NA	132354166	132354325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132354200_132354300
PB_novel_30310_0	chr4	+	179	1	Intergenic	novelGene_747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTTTTTTTGGAAAAAAA	7260	False	NA	NA	False	NA	NA	NA	132359032	132359211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132359000_132359200
PB_novel_30314_1	chr4	-	175	1	Intergenic	novelGene_748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATGGGAAT	7909	False	NA	NA	False	NA	NA	NA	132390301	132390126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132390100_132390300
PB_novel_30315_0	chr4	-	171	1	Intergenic	novelGene_749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAATAAAAATAAATAA	7182	False	NA	NA	False	NA	NA	NA	132391028	132390857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132390900_132391000
PB_novel_30320_0	chr4	+	201	1	Intergenic	novelGene_750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	132443295	132443496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132443300_132443500
PB_novel_30324_0	chr4	-	168	1	Intergenic	novelGene_751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAATAAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	132486493	132486325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132486300_132486500
PB_novel_30326_0	chr4	-	167	1	Intergenic	novelGene_752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATATGCACATAC	7866	False	NA	NA	False	NA	NA	NA	132507565	132507398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132507400_132507600
PB_novel_30329_0	chr4	+	174	1	Intergenic	novelGene_753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTAAAAATGTGAAAAAA	2971	False	NA	NA	False	NA	NA	NA	132518796	132518970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132518800_132519000
PB_novel_30332_0	chr4	+	180	1	Intergenic	novelGene_754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATTG	97	False	NA	NA	False	NA	NA	NA	132530843	132531023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132530800_132531000
PB_novel_30338_0	chr4	+	174	1	Intergenic	novelGene_755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTTAAAAAAAAAAAAGAAA	9984	False	NA	NA	False	NA	NA	NA	132578802	132578976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132578800_132579000
PB_novel_30340_0	chr4	+	177	1	Intergenic	novelGene_756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAGAGAGAA	6988	False	NA	NA	False	NA	NA	NA	132588485	132588662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132588500_132588700
PB_novel_30345_0	chr4	+	195	1	Intergenic	novelGene_757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAGAAAAGAAAG	6989	False	NA	NA	False	NA	NA	NA	132618616	132618811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132618600_132618800
PB_novel_30349_0	chr4	-	175	1	Intergenic	novelGene_758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	7820	False	NA	NA	False	NA	NA	NA	132631074	132630899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132630900_132631100
PB_novel_30353_2	chr4	+	2392	1	Antisense	novelGene_ENSMUSG00000028878.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	5578	False	NA	NA	False	NA	NA	NA	132644651	132647043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_132644700_132647000
PB_novel_30355_0	chr4	+	175	1	Intergenic	novelGene_759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	132654049	132654224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132654000_132654200
PB_novel_30357_0	chr4	+	177	1	Intergenic	novelGene_760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACAAAGAT	NA	False	NA	NA	False	NA	NA	NA	132685519	132685696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132685500_132685700
PB_novel_30359_0	chr4	-	167	1	Intergenic	novelGene_761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCAAAAAGAAAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	132705841	132705674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132705700_132705800
PB_novel_30361_0	chr4	-	138	1	Intergenic	novelGene_762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAACCAAAAAAA	1663	False	NA	NA	False	NA	NA	NA	132733183	132733045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132733000_132733200
PB_novel_30362_0	chr4	+	177	1	Intergenic	novelGene_763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGGAA	1752	False	NA	NA	False	NA	NA	NA	132733586	132733763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132733600_132733800
PB_novel_30363_0	chr4	-	3850	1	Antisense	novelGene_ENSMUSG00000037692.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132799431	132795581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_132795600_132799400
PB_novel_30365_0	chr4	+	282	1	ISM	ENSMUSG00000037692.15	ENSMUST00000105915.8	6341	7	65814	262	11071	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAATGAAAAAAAGC	9341	False	NA	NA	False	NA	NA	NA	132804630	132804912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr4_+_132804600_132804900
PB_novel_30370_0	chr4	+	171	1	Intergenic	novelGene_764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGGAC	NA	False	NA	NA	False	NA	NA	NA	132851206	132851377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_132851200_132851400
PB_novel_30377_0	chr4	-	169	1	Intergenic	novelGene_765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	9797	False	NA	NA	False	NA	NA	NA	132874722	132874553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132874600_132874700
PB_novel_30379_0	chr4	-	207	1	Intergenic	novelGene_766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	AAGAAA	-34	NA	132889191	132888984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132889000_132889200
PB_novel_30381_0	chr4	-	170	1	Intergenic	novelGene_767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTAATAAATTAATTAATT	NA	False	NA	NA	False	NA	NA	NA	132952633	132952463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_132952500_132952600
PB_novel_30384_0	chr4	-	177	1	Intergenic	novelGene_768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	177	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	133033630	133033453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_133033500_133033600
PB_novel_30389_0	chr4	+	174	1	Intergenic	novelGene_769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	4685	False	NA	NA	False	NA	NA	NA	133082210	133082384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_133082200_133082400
PB_novel_30390_0	chr4	+	176	1	Intergenic	novelGene_770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAGAAAA	7663	False	NA	NA	False	NA	NA	NA	133104522	133104698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_133104500_133104700
PB_novel_30399_0	chr4	+	184	1	Intergenic	novelGene_771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAATTAATTAA	NA	False	NA	NA	False	NA	NA	NA	133239985	133240169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_133240000_133240200
PB_novel_30404_0	chr4	-	178	1	Intergenic	novelGene_772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTACAAAACACACATGAAT	NA	False	NA	NA	False	NA	NA	NA	133294297	133294119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_133294100_133294300
PB_novel_30409_0	chr4	-	175	1	Intergenic	novelGene_773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	133315020	133314845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_133314800_133315000
PB_novel_30413_0	chr4	+	176	1	Intergenic	novelGene_774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CATTTAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	133354751	133354927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_133354800_133354900
PB_novel_30427_0	chr4	-	138	1	Intergenic	novelGene_775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAATAATAATAATAATAA	NA	False	NA	NA	False	NA	NA	NA	133512386	133512248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_133512200_133512400
PB_novel_30429_0	chr4	+	162	1	Intergenic	novelGene_776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133529429	133529591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_133529400_133529600
PB_novel_30431_0	chr4	+	186	1	Intergenic	novelGene_777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAATAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	133535971	133536157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_133536000_133536200
PB_novel_30432_0	chr4	+	135	1	Intergenic	novelGene_778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133552196	133552331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_133552200_133552300
PB_novel_30433_0	chr4	+	172	2	Antisense	novelGene_ENSMUSG00000003644.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGAC	9904	False	NA	NA	False	NA	NA	NA	133563285	133590472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_133563390_133590404
PB_novel_30434_1	chr4	-	181	1	Intergenic	novelGene_781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAATAAATAAA	9073	False	NA	NA	False	NA	NA	NA	133677610	133677429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_133677400_133677600
PB_novel_30437_0	chr4	+	187	1	Intergenic	novelGene_779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	133618037	133618224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_133618000_133618200
PB_novel_30443_0	chr4	-	175	1	Intergenic	novelGene_780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAGAAAA	9916	False	NA	NA	False	NA	NA	NA	133664175	133664000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_133664000_133664200
PB_novel_30446_0	chr4	+	5531	1	Intergenic	novelGene_782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAGGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133683970	133689501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_133684000_133689500
PB_novel_30452_0	chr4	-	149	1	Intergenic	novelGene_783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133734198	133734049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_133734000_133734200
PB_novel_30458_0	chr4	-	162	1	Intergenic	novelGene_784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	3815	False	NA	NA	False	NA	NA	NA	133811995	133811833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_133811800_133812000
PB_novel_30470_1	chr4	-	173	1	Intergenic	novelGene_785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAACAAAAAAAAAA	1783	False	NA	NA	False	NA	NA	NA	133966833	133966660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_133966700_133966800
PB_novel_30476_0	chr4	+	170	1	Intergenic	novelGene_786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	1404	False	NA	NA	False	NA	NA	NA	134062168	134062338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_134062200_134062300
PB_novel_30483_0	chr4	+	175	1	Intergenic	novelGene_787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAATCTTAAAAAAAAA	121	False	NA	NA	False	NA	NA	NA	134121972	134122147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_134122000_134122100
PB_novel_30493_0	chr4	+	169	1	Intergenic	novelGene_788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATAAATCTTTAAAAAAAA	8165	False	NA	NA	False	NA	NA	NA	134255120	134255289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_134255100_134255300
PB_novel_30498_0	chr4	-	193	1	Intergenic	novelGene_789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	134446597	134446404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_134446400_134446600
PB_novel_30501_0	chr4	-	130	1	Intergenic	novelGene_790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134498415	134498285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_134498300_134498400
PB_novel_30504_0	chr4	+	176	1	Intergenic	novelGene_791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATTTATT	NA	False	NA	NA	False	NA	NA	NA	134521551	134521727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_134521600_134521700
PB_novel_30505_0	chr4	+	175	1	Intergenic	novelGene_792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAAATGGTTCT	8705	False	NA	NA	False	NA	NA	NA	134557069	134557244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_134557100_134557200
PB_novel_30509_0	chr4	+	181	1	Intergenic	novelGene_793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCAAT	NA	False	NA	NA	False	NA	NA	NA	134614866	134615047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_134614900_134615000
PB_novel_30513_0	chr4	-	176	1	Intergenic	novelGene_794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAGAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	134649628	134649452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_134649500_134649600
PB_novel_30524_0	chr4	-	176	1	Intergenic	novelGene_795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	134976361	134976185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_134976200_134976400
PB_novel_30526_0	chr4	-	921	1	NIC	ENSMUSG00000037242.9	novel	4119	6	NA	NA	52	-48378	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAGAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	135000073	134999152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_134999200_135000100
PB_novel_30527_1	chr4	-	168	1	Intergenic	novelGene_796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	135017535	135017367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_135017400_135017500
PB_novel_30534_0	chr4	+	182	1	Intergenic	novelGene_797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATACAATAGT	NA	False	NA	NA	False	NA	NA	NA	135075538	135075720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_135075500_135075700
PB_novel_30538_0	chr4	+	165	1	Intergenic	novelGene_798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAAATCTTTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	135111794	135111959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_135111800_135112000
PB_novel_30540_0	chr4	+	3483	1	Antisense	novelGene_ENSMUSG00000081136.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	8468	False	NA	NA	False	NA	NA	NA	135129396	135132879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_135129400_135132900
PB_novel_30548_0	chr4	-	176	1	Intergenic	novelGene_799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	6777	False	NA	NA	False	NA	NA	NA	135211856	135211680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_135211700_135211900
PB_novel_30557_0	chr4	+	176	1	Intergenic	novelGene_800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAATTATAT	9219	False	NA	NA	False	NA	NA	NA	135366948	135367124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_135366900_135367100
PB_novel_30565_0	chr4	-	156	1	Intergenic	novelGene_801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATTAATT	NA	False	NA	NA	False	NA	NA	NA	135550416	135550260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_135550300_135550400
PB_novel_30566_0	chr4	-	174	1	Intergenic	novelGene_802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	135562496	135562322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_135562300_135562500
PB_novel_30570_0	chr4	+	174	1	Intergenic	novelGene_803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAACAAAAAAATTAAAGATT	NA	False	NA	NA	False	NA	NA	NA	135617914	135618088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_135617900_135618100
PB_novel_30577_0	chr4	+	180	1	Intergenic	novelGene_804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAAAACAACCC	NA	False	NA	NA	False	NA	NA	NA	135720234	135720414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_135720200_135720400
PB_novel_30578_0	chr4	+	177	1	Intergenic	novelGene_805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7648	False	NA	NA	False	NA	NA	NA	135735801	135735978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_135735800_135736000
PB_novel_30584_0	chr4	-	173	1	Intergenic	novelGene_806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	135792030	135791857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_135791900_135792000
PB_novel_30591_0	chr4	-	150	1	Intergenic	novelGene_807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAAACAAAGGAG	6524	False	NA	NA	False	NA	NA	NA	135891965	135891815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_135891800_135892000
PB_novel_30604_0	chr4	+	158	1	Intergenic	novelGene_808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATCAAACAAACAAACAAAC	9888	False	NA	NA	False	NA	NA	NA	136007317	136007475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_136007300_136007500
PB_novel_30610_0	chr4	-	178	1	Intergenic	novelGene_809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	784	False	NA	NA	False	NA	NA	NA	136052595	136052417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_136052400_136052600
PB_novel_30612_0	chr4	-	741	1	Intergenic	novelGene_810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	136065081	136064340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_136064300_136065100
PB_novel_30613_1	chr4	+	175	2	Intergenic	novelGene_811	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	136092230	136112462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_136092305_136112361
PB_novel_30615_0	chr4	+	177	2	Intergenic	novelGene_812	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAACCTAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	136112285	136133455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_136112444_136133436
PB_novel_30615_1	chr4	+	176	1	Intergenic	novelGene_813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	136112286	136112462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_136112300_136112500
PB_novel_30621_0	chr4	-	155	1	Intergenic	novelGene_815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	136208675	136208520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_136208500_136208700
PB_novel_30622_0	chr4	-	177	1	Intergenic	novelGene_814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAACACTCATCCAC	NA	False	NA	NA	False	NA	NA	NA	136195361	136195184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_136195200_136195400
PB_novel_30634_0	chr4	-	177	1	Antisense	novelGene_ENSMUSG00000103119.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAATATATTT	NA	False	NA	NA	False	NA	NA	NA	136368921	136368744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_136368700_136368900
PB_novel_30636_1	chr4	-	169	1	Intergenic	novelGene_816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	136512673	136512504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_136512500_136512700
PB_novel_30642_0	chr4	-	185	1	Intergenic	novelGene_817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	136715728	136715543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_136715500_136715700
PB_novel_30648_10	chr4	+	197	2	Intergenic	novelGene_819	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	1	52	junction_1	0	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTATTTAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	137090673	137091041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_137090850_137091020
PB_novel_30649_0	chr4	+	1771	1	Intergenic	novelGene_818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGATAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	137081852	137083623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_137081900_137083600
PB_novel_30662_0	chr4	-	176	1	Intergenic	novelGene_820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAGAA	6732	False	NA	NA	False	NA	NA	NA	137242385	137242209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_137242200_137242400
PB_novel_30668_0	chr4	+	6310	1	NIC	ENSMUSG00000043411.16	novel	619	4	NA	NA	11	-5360	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	602	False	NA	NA	False	NA	NA	NA	137321549	137327859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_137321500_137327900
PB_novel_30669_0	chr4	-	2054	1	Intergenic	novelGene_821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACCAAAAAAAAAAACAAA	9918	False	NA	NA	False	NA	NA	NA	137326223	137324169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_137324200_137326200
PB_novel_30670_0	chr4	-	150	1	Intergenic	novelGene_822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAATAAA	2758	False	NA	NA	False	NA	NA	NA	137342499	137342349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_137342300_137342500
PB_novel_30672_0	chr4	-	179	1	Intergenic	novelGene_823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	137345390	137345211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_137345200_137345400
PB_novel_30677_0	chr4	+	206	1	Intergenic	novelGene_824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAATAAGATAAATA	8726	False	NA	NA	False	NA	NA	NA	137397425	137397631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_137397400_137397600
PB_novel_30678_0	chr4	-	181	1	Intergenic	novelGene_825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGTGGATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	137453615	137453434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_137453400_137453600
PB_novel_30683_0	chr4	-	160	1	Intergenic	novelGene_826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATTAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	137538316	137538156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_137538200_137538300
PB_novel_30684_0	chr4	+	154	1	Intergenic	novelGene_827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	137542470	137542624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_137542500_137542600
PB_novel_30689_0	chr4	-	168	1	Intergenic	novelGene_828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	137694502	137694334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_137694300_137694500
PB_novel_30693_0	chr4	-	167	1	Intergenic	novelGene_829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAATAAATAAATAAATA	2269	False	NA	NA	False	NA	NA	NA	137740160	137739993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_137740000_137740200
PB_novel_30694_0	chr4	-	179	1	Intergenic	novelGene_830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	921	False	NA	NA	False	NA	NA	NA	137741508	137741329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_137741300_137741500
PB_novel_30699_0	chr4	+	168	1	Intergenic	novelGene_831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	137787612	137787780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_137787600_137787800
PB_novel_30710_0	chr4	-	153	1	Intergenic	novelGene_832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAAATTTAATTAA	NA	False	NA	NA	False	NA	NA	NA	138086144	138085991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_138086000_138086100
PB_novel_30715_0	chr4	-	155	1	Intergenic	novelGene_833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAAAAATAAATTAT	NA	False	NA	NA	False	NA	NA	NA	138158442	138158287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_138158300_138158400
PB_novel_30733_0	chr4	+	175	1	Intergenic	novelGene_834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATTAAAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	138702064	138702239	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_138702100_138702200
PB_novel_30738_0	chr4	+	173	1	Intergenic	novelGene_835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAATATATGA	NA	False	NA	NA	False	NA	NA	NA	138860712	138860885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_138860700_138860900
PB_novel_30739_0	chr4	-	171	1	Intergenic	novelGene_836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGAGCC	NA	False	NA	NA	False	NA	NA	NA	138865875	138865704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_138865700_138865900
PB_novel_30742_0	chr4	-	3049	1	Intergenic	novelGene_837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	139001078	138998029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_138998000_139001100
PB_novel_30743_0	chr4	-	178	1	Intergenic	novelGene_838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAATCAAAAACA	NA	False	NA	NA	False	NA	NA	NA	139006964	139006786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_139006800_139007000
PB_novel_30744_0	chr4	+	170	1	Intergenic	novelGene_839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	139020470	139020640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_139020500_139020600
PB_novel_30748_0	chr4	-	828	1	Intergenic	novelGene_840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	139047354	139046526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_139046500_139047400
PB_novel_30754_1	chr4	-	2375	1	Antisense	novelGene_ENSMUSG00000066036.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9299	False	NA	NA	False	NA	NA	NA	139177273	139174898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_139174900_139177300
PB_novel_30756_0	chr4	-	180	1	Intergenic	novelGene_841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	139267862	139267682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_139267700_139267900
PB_novel_30766_0	chr4	+	176	1	Intergenic	novelGene_842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAATTCTA	4793	False	NA	NA	False	NA	NA	NA	139928250	139928426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_139928200_139928400
PB_novel_30767_0	chr4	-	176	1	Intergenic	novelGene_843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAGAAGAAACTGCA	NA	False	NA	NA	False	NA	NA	NA	140027712	140027536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_140027500_140027700
PB_novel_30771_0	chr4	-	174	1	Intergenic	novelGene_844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGTAACCAATA	NA	False	NA	NA	False	NA	NA	NA	140132060	140131886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_140131900_140132100
PB_novel_30775_0	chr4	-	2394	1	NIC	ENSMUSG00000040964.17	novel	3043	16	NA	NA	-428	9010	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140296120	140293726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_140293700_140296100
PB_novel_30778_0	chr4	-	172	1	Intergenic	novelGene_845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAATAATACAAAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	140410913	140410741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_140410700_140410900
PB_novel_30779_0	chr4	-	639	3	Antisense	novelGene_ENSMUSG00000086159.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_2	2	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAATAATAATACAAAAAG	NA	False	NA	NA	False	NA	NA	NA	140412317	140410744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_140411134_140411591_140411749_140412224
PB_novel_30780_0	chr4	+	161	1	Intergenic	novelGene_846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAACCAATAAACT	NA	False	NA	NA	False	NA	NA	NA	140419028	140419189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_140419000_140419200
PB_novel_30790_0	chr4	+	176	1	Intergenic	novelGene_847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAATGAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	140564447	140564623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_140564400_140564600
PB_novel_30791_0	chr4	-	197	1	Intergenic	novelGene_848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	9244	False	NA	NA	False	NA	NA	NA	140601342	140601145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_140601100_140601300
PB_novel_30792_0	chr4	+	176	1	Intergenic	novelGene_849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAGAAGAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	140620445	140620621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_140620400_140620600
PB_novel_30805_0	chr4	-	174	1	Intergenic	novelGene_850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	140857691	140857517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_140857500_140857700
PB_novel_30807_1	chr4	+	175	1	Intergenic	novelGene_851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140944785	140944960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_140944800_140945000
PB_novel_30817_0	chr4	-	168	1	Intergenic	novelGene_852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGACCG	NA	False	NA	NA	False	NA	NA	NA	140964019	140963851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_140963900_140964000
PB_novel_30826_0	chr4	-	181	1	Intergenic	novelGene_853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	4897	False	NA	NA	False	NA	NA	NA	141073423	141073242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_141073200_141073400
PB_novel_30833_0	chr4	-	197	1	Intergenic	novelGene_854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACATACATACATACATA	NA	False	NA	NA	False	NA	NA	NA	141145706	141145509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_141145500_141145700
PB_novel_30839_0	chr4	+	1999	1	Intergenic	novelGene_855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAATAAAAAAAA	7524	False	NA	NA	False	ATTAAA	-21	NA	141230245	141232244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_141230200_141232200
PB_novel_30841_1	chr4	+	184	1	Intergenic	novelGene_856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAACAAAAAAAA	774	False	NA	NA	False	NA	NA	NA	141283700	141283884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_141283700_141283900
PB_novel_30842_0	chr4	+	165	1	Intergenic	novelGene_857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATAAATCTTAAAA	1603	False	NA	NA	False	NA	NA	NA	141284529	141284694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_141284500_141284700
PB_novel_30843_0	chr4	+	184	1	Intergenic	novelGene_858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	4104	False	NA	NA	False	NA	NA	NA	141288915	141289099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_141288900_141289100
PB_novel_30854_0	chr4	-	164	1	Intergenic	novelGene_859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTAAAATAAATAAAGTC	NA	False	NA	NA	False	NA	NA	NA	141402042	141401878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_141401900_141402000
PB_novel_30856_0	chr4	-	175	1	Intergenic	novelGene_860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9528	False	NA	NA	False	NA	NA	NA	141415051	141414876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_141414900_141415100
PB_novel_30859_0	chr4	+	171	1	Intergenic	novelGene_861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9234	False	NA	NA	False	NA	NA	NA	141453919	141454090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_141453900_141454100
PB_novel_30860_0	chr4	-	174	1	Intergenic	novelGene_862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGTAATTGAACAAG	NA	False	NA	NA	False	NA	NA	NA	141520254	141520080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_141520100_141520300
PB_novel_30865_0	chr4	+	172	1	Intergenic	novelGene_863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTTAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	141687850	141688022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_141687800_141688000
PB_novel_30869_0	chr4	+	176	1	Intergenic	novelGene_864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATGTATTATAAC	1940	False	NA	NA	False	NA	NA	NA	141821033	141821209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_141821000_141821200
PB_novel_30874_0	chr4	-	171	1	Intergenic	novelGene_865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	141989697	141989526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_141989500_141989700
PB_novel_30885_0	chr4	+	3267	1	Intergenic	novelGene_866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-9	NA	142902159	142905426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_142902200_142905400
PB_novel_30889_0	chr4	+	172	1	Intergenic	novelGene_867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	142943128	142943300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_142943100_142943300
PB_novel_30891_0	chr4	-	155	1	Intergenic	novelGene_868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAACCTTCAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	142962093	142961938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_142961900_142962100
PB_novel_30892_0	chr4	-	167	1	Intergenic	novelGene_869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAAATCTTTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	142974471	142974304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_142974300_142974500
PB_novel_30895_0	chr4	-	136	1	Intergenic	novelGene_870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	143000431	143000295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_143000300_143000400
PB_novel_30899_0	chr4	+	177	1	Intergenic	novelGene_871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAACT	NA	False	NA	NA	False	NA	NA	NA	143019451	143019628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_143019500_143019600
PB_novel_30910_0	chr4	+	176	1	Intergenic	novelGene_872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	143193041	143193217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_143193000_143193200
PB_novel_30918_0	chr4	+	173	1	Intergenic	novelGene_873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAGAAAAG	8980	False	NA	NA	False	NA	NA	NA	143728430	143728603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_143728400_143728600
PB_novel_30924_0	chr4	+	249	1	Intergenic	novelGene_874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-17	NA	143975087	143975336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_143975100_143975300
PB_novel_30927_0	chr4	-	175	1	Intergenic	novelGene_875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	144049179	144049004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_144049000_144049200
PB_novel_30929_0	chr4	-	171	1	Intergenic	novelGene_876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	144129121	144128950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_144129000_144129100
PB_novel_30940_0	chr4	-	175	1	Intergenic	novelGene_877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	145002215	145002040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_145002000_145002200
PB_novel_30949_0	chr4	-	900	1	Intergenic	novelGene_878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGCCAAAAAAAAAAAAAGCT	NA	False	NA	NA	False	AATAAA	-18	NA	145165551	145164651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_145164700_145165600
PB_novel_30974_1	chr4	+	177	2	Intergenic	novelGene_879	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATTTAAAAAAAATA	1876	False	NA	NA	False	NA	NA	NA	145276517	145277263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_145276575_145277143
PB_novel_30979_0	chr4	-	173	1	Intergenic	novelGene_880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	145323071	145322898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_145322900_145323100
PB_novel_30982_1	chr4	-	173	1	Intergenic	novelGene_883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	145491830	145491657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_145491700_145491800
PB_novel_30986_0	chr4	+	3405	1	Intergenic	novelGene_881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAAAATCAATAACAA	2915	False	NA	NA	False	NA	NA	NA	145437621	145441026	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_145437600_145441000
PB_novel_30987_0	chr4	+	182	1	Intergenic	novelGene_882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	145472809	145472991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_145472800_145473000
PB_novel_30989_0	chr4	+	255	3	Intergenic	novelGene_884	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	244	junction_2	92.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAGAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	145508071	145516069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_145508210_145510590_145510684_145516045
PB_novel_30996_0	chr4	+	181	1	Intergenic	novelGene_885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	5154	False	NA	NA	False	NA	NA	NA	145590354	145590535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_145590400_145590500
PB_novel_31009_0	chr4	-	173	1	Intergenic	novelGene_888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	146190729	146190556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146190600_146190700
PB_novel_31013_0	chr4	-	304	2	Antisense	novelGene_ENSMUSG00000066007.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	171	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAAAAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	146100483	146041682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_146041823_146100319
PB_novel_31016_0	chr4	+	3836	1	Genic_Genomic	ENSMUSG00000066007.16	novel	NA	NA	NA	NA	-1221	5596	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAATGAAAAAAAAA	17	False	NA	NA	False	AATGAA	-28	NA	146097257	146101093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_146097300_146101100
PB_novel_31018_0	chr4	-	173	1	Intergenic	novelGene_886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAAAAACTG	NA	False	NA	NA	False	NA	NA	NA	146111541	146111368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146111400_146111500
PB_novel_31024_0	chr4	+	158	1	Intergenic	novelGene_887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	146177041	146177199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_146177000_146177200
PB_novel_31027_0	chr4	-	2308	1	Antisense	novelGene_ENSMUSG00000085525.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGGAAAAAAAAAAA	8124	False	NA	NA	False	AATGAA	-27	NA	146216690	146214382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_146214400_146216700
PB_novel_31029_0	chr4	-	1873	1	Intergenic	novelGene_889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATGCAAAAAAAAAAAAAAAA	882	False	NA	NA	False	NA	NA	NA	146223932	146222059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146222100_146223900
PB_novel_31034_1	chr4	-	4560	2	Intergenic	novelGene_890	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAACAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	146433616	146292637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146292811_146429229
PB_novel_31038_0	chr4	-	169	1	Intergenic	novelGene_891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTCTTTAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	146308793	146308624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146308600_146308800
PB_novel_31043_0	chr4	+	2486	1	Intergenic	novelGene_892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAATGAAAAAAAAA	637	False	NA	NA	False	AATGAA	-28	NA	146431736	146434222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_146431700_146434200
PB_novel_31049_0	chr4	-	169	1	Intergenic	novelGene_893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATCTTTAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	146511106	146510937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146510900_146511100
PB_novel_31050_0	chr4	-	1399	2	Intergenic	novelGene_894	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	26	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	146517209	146515627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146515762_146515944
PB_novel_31052_0	chr4	+	1294	1	Intergenic	novelGene_895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGACAAAAAAAAAAAATCAG	NA	False	NA	NA	False	NA	NA	NA	146536550	146537844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_146536600_146537800
PB_novel_31059_0	chr4	-	176	1	Intergenic	novelGene_896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAATAGAAAAATATT	NA	False	NA	NA	False	NA	NA	NA	146571836	146571660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146571700_146571800
PB_novel_31060_2	chr4	-	173	1	Intergenic	novelGene_899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	146679223	146679050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146679000_146679200
PB_novel_31066_0	chr4	-	180	1	Intergenic	novelGene_897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	146619512	146619332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146619300_146619500
PB_novel_31074_0	chr4	+	194	1	Intergenic	novelGene_898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	146665579	146665773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_146665600_146665800
PB_novel_31083_0	chr4	-	178	1	Intergenic	novelGene_900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	146825644	146825466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146825500_146825600
PB_novel_31085_0	chr4	-	175	1	Intergenic	novelGene_901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAATTAAAAAAATAA	8935	False	NA	NA	False	NA	NA	NA	146896028	146895853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_146895900_146896000
PB_novel_31094_0	chr4	-	839	1	NIC	ENSMUSG00000045699.5	novel	750	5	NA	NA	9	-16337	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATACAAAGAAAGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	146994038	146993199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_-_146993200_146994000
PB_novel_31111_0	chr4	+	177	1	Intergenic	novelGene_902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAATTAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	147092211	147092388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_147092200_147092400
PB_novel_31117_0	chr4	+	170	1	Intergenic	novelGene_903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	147187303	147187473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_147187300_147187500
PB_novel_31122_0	chr4	-	170	1	Intergenic	novelGene_904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATAAAATAAATATTTT	NA	False	NA	NA	False	NA	NA	NA	147227543	147227373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_147227400_147227500
PB_novel_31128_0	chr4	-	176	1	Intergenic	novelGene_905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAATAGAAAAATATTC	NA	False	NA	NA	False	NA	NA	NA	147298263	147298087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_147298100_147298300
PB_novel_31130_0	chr4	-	177	1	Intergenic	novelGene_906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	147319213	147319036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_147319000_147319200
PB_novel_31139_0	chr4	+	1111	1	Intergenic	novelGene_907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATGAA	-9	NA	147422436	147423547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_147422400_147423500
PB_novel_31148_0	chr4	+	5406	2	Genic_Genomic	ENSMUSG00000082248.2	novel	559	1	NA	NA	-32	12989	multi-exon	FALSE	canonical	3	49	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	147527895	147541475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_147527997_147536170
PB_novel_31148_1	chr4	+	3109	1	Intergenic	novelGene_909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	147538367	147541476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_147538400_147541500
PB_novel_31148_2	chr4	+	5472	2	Intergenic	novelGene_908	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	51	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	147533619	147541476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_147533786_147536170
PB_novel_31150_0	chr4	-	5711	1	Intergenic	novelGene_910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGTCAAAAAAGTAAAAAAAA	NA	False	NA	NA	False	AATAGA	-29	NA	147550275	147544564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_147544600_147550300
PB_novel_31151_0	chr4	-	1707	1	Intergenic	novelGene_911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	147567360	147565653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_147565700_147567400
PB_novel_31167_0	chr4	-	3037	1	Antisense	novelGene_ENSMUSG00000065999.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGGAT	NA	False	NA	NA	False	NA	NA	NA	147671930	147668893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_147668900_147671900
PB_novel_31171_0	chr4	+	176	1	Intergenic	novelGene_913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	9524	False	NA	NA	False	NA	NA	NA	147878387	147878563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_147878400_147878600
PB_novel_31174_0	chr4	-	176	1	Intergenic	novelGene_912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAATTAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	147741748	147741572	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_147741600_147741700
PB_novel_31182_0	chr4	+	3876	1	Antisense	novelGene_ENSMUSG00000078495.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	147858910	147862786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_147858900_147862800
PB_novel_31184_2	chr4	+	2959	2	Antisense	novelGene_ENSMUSG00000093594.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACC	6382	False	NA	NA	False	NA	NA	NA	147875245	147878279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_147877585_147877659
PB_novel_31188_0	chr4	+	163	1	Intergenic	novelGene_914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAATAAAGTCTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	147891904	147892067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_147891900_147892100
PB_novel_31202_0	chr4	-	162	1	Intergenic	novelGene_915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	148110388	148110226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_148110200_148110400
PB_novel_31208_0	chr4	+	156	1	Intergenic	novelGene_916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	148177940	148178096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_148177900_148178100
PB_novel_31209_0	chr4	+	168	1	Intergenic	novelGene_917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	148187944	148188112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_148187900_148188100
PB_novel_31211_0	chr4	-	146	1	Intergenic	novelGene_918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	148196443	148196297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_148196300_148196400
PB_novel_31220_0	chr4	+	174	1	Intergenic	novelGene_919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGCCTGA	NA	False	NA	NA	False	NA	NA	NA	148511294	148511468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_148511300_148511500
PB_novel_31222_0	chr4	-	177	1	Intergenic	novelGene_920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAATA	NA	False	NA	NA	False	NA	NA	NA	148574767	148574590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_148574600_148574800
PB_novel_31224_0	chr4	-	174	1	Intergenic	novelGene_921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGATACT	NA	False	NA	NA	False	NA	NA	NA	148606761	148606587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_148606600_148606800
PB_novel_31226_0	chr4	-	173	1	Intergenic	novelGene_922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	431	False	NA	NA	False	NA	NA	NA	148626590	148626417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_148626400_148626600
PB_novel_31230_1	chr4	-	173	1	Intergenic	novelGene_923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAATTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	148675027	148674854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_148674900_148675000
PB_novel_31232_0	chr4	+	10999	1	Genic_Genomic	ENSMUSG00000028979.18	novel	NA	NA	NA	NA	8165	6239	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATGG	NA	False	NA	NA	False	NA	NA	NA	148695196	148706195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr4_+_148695200_148706200
PB_novel_31242_0	chr4	-	188	1	Intergenic	novelGene_924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	148953389	148953201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_148953200_148953400
PB_novel_31244_0	chr4	+	158	1	Intergenic	novelGene_925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	149077177	149077335	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_149077200_149077300
PB_novel_31249_0	chr4	+	172	1	Intergenic	novelGene_926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAAAAAAAGACCCTA	NA	False	NA	NA	False	NA	NA	NA	149177117	149177289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_149177100_149177300
PB_novel_31255_0	chr4	+	118	1	Intergenic	novelGene_927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAGAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149205432	149205550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_149205400_149205600
PB_novel_31260_2	chr4	+	189	1	Intergenic	novelGene_932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	149372967	149373156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_149373000_149373200
PB_novel_31264_0	chr4	-	299	1	Intergenic	novelGene_928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	149254505	149254206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_149254200_149254500
PB_novel_31265_0	chr4	+	185	1	Intergenic	novelGene_929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATATTTTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	149260205	149260390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_149260200_149260400
PB_novel_31267_3	chr4	+	161	1	Intergenic	novelGene_930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	149273345	149273506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_149273300_149273500
PB_novel_31275_0	chr4	+	176	1	Intergenic	novelGene_931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAGAGAAACAGT	1809	False	NA	NA	False	NA	NA	NA	149336473	149336649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_149336500_149336600
PB_novel_31280_0	chr4	+	182	1	Intergenic	novelGene_933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	149378365	149378547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_149378400_149378500
PB_novel_31281_0	chr4	+	188	1	Intergenic	novelGene_934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACACAGACACA	NA	False	NA	NA	False	NA	NA	NA	149401221	149401409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_149401200_149401400
PB_novel_31297_0	chr4	+	178	1	Antisense	novelGene_ENSMUSG00000028992.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGTGGC	7616	False	NA	NA	False	NA	NA	NA	149552735	149552913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_149552700_149552900
PB_novel_31299_0	chr4	+	167	2	Antisense	novelGene_ENSMUSG00000028992.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAGAAAA	2538	False	NA	NA	False	NA	NA	NA	149555729	149556562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_+_149555873_149556538
PB_novel_31307_0	chr4	-	176	1	Intergenic	novelGene_935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGGG	NA	False	NA	NA	False	NA	NA	NA	149595085	149594909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_149594900_149595100
PB_novel_31318_0	chr4	+	177	1	Intergenic	novelGene_936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTCTCCATGC	3849	False	NA	NA	False	NA	NA	NA	149706763	149706940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_149706800_149706900
PB_novel_31320_0	chr4	-	2191	1	Antisense	novelGene_ENSMUSG00000039953.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149726392	149724201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_149724200_149726400
PB_novel_31323_0	chr4	-	178	1	Intergenic	novelGene_937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAGACACTCAT	NA	False	NA	NA	False	NA	NA	NA	149823834	149823656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_149823700_149823800
PB_novel_31334_0	chr4	-	174	1	Intergenic	novelGene_938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTCTTTAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	150096175	150096001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_150096000_150096200
PB_novel_31335_0	chr4	+	171	1	Intergenic	novelGene_939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAGAAAAAGA	2643	False	NA	NA	False	NA	NA	NA	150106248	150106419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_150106200_150106400
PB_novel_31338_0	chr4	-	171	1	Intergenic	novelGene_940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAGAAGAAAATATA	7972	False	NA	NA	False	NA	NA	NA	150193161	150192990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_150193000_150193200
PB_novel_31347_0	chr4	-	175	1	Intergenic	novelGene_941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	150317301	150317126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_150317100_150317300
PB_novel_31353_0	chr4	-	178	1	Intergenic	novelGene_942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	553	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATATTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150338141	150337963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_150338000_150338100
PB_novel_31356_1	chr4	-	176	2	Antisense	novelGene_ENSMUSG00000039852.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150369443	150358279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_150358292_150369279
PB_novel_31357_0	chr4	-	144	1	Intergenic	novelGene_943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150358423	150358279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_150358300_150358400
PB_novel_31369_0	chr4	+	156	1	Intergenic	novelGene_944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTAATAAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	150503369	150503525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_150503400_150503500
PB_novel_31370_0	chr4	+	176	1	Intergenic	novelGene_945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	593	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	5036	False	NA	NA	False	NA	NA	NA	150578551	150578727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_150578600_150578700
PB_novel_31377_0	chr4	+	184	1	Intergenic	novelGene_946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAAAAAG	5309	False	NA	NA	False	NA	NA	NA	150683448	150683632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_150683400_150683600
PB_novel_31380_0	chr4	-	161	1	Intergenic	novelGene_947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAACCCA	2484	False	NA	NA	False	NA	NA	NA	150797117	150796956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_150797000_150797100
PB_novel_31389_0	chr4	-	203	1	Intergenic	novelGene_948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATCTTAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	150971244	150971041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_150971000_150971200
PB_novel_31391_0	chr4	+	163	1	Intergenic	novelGene_949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAGTCTTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	151012987	151013150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_151013000_151013200
PB_novel_31411_3	chr4	+	168	1	Intergenic	novelGene_951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATATTTAAAAAAAA	1157	False	NA	NA	False	NA	NA	NA	152010234	152010402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_152010200_152010400
PB_novel_31412_0	chr4	-	164	1	Intergenic	novelGene_950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGTAGGA	NA	False	NA	NA	False	NA	NA	NA	152003207	152003043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_152003000_152003200
PB_novel_31422_0	chr4	+	158	1	Intergenic	novelGene_952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAACAAAAAAA	8081	False	NA	NA	False	NA	NA	NA	152084341	152084499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_152084300_152084500
PB_novel_31426_0	chr4	+	1601	1	NIC	ENSMUSG00000028948.17	novel	2419	6	NA	NA	3	-11290	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAAAAAAG	7357	False	NA	NA	False	NA	NA	NA	152123795	152125396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_152123800_152125400
PB_novel_31430_0	chr4	+	165	1	Intergenic	novelGene_953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGTCAGG	NA	False	NA	NA	False	NA	NA	NA	152150651	152150816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_152150700_152150800
PB_novel_31433_0	chr4	+	172	1	Intergenic	novelGene_954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CTAAAAAAAAAAAAAAAAAA	221	False	NA	NA	False	NA	NA	NA	152178469	152178641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_152178500_152178600
PB_novel_31436_0	chr4	+	168	1	Intergenic	novelGene_955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATTTTAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	152237170	152237338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_152237200_152237300
PB_novel_31438_0	chr4	+	170	1	Intergenic	novelGene_956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTTAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	152241189	152241359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_152241200_152241400
PB_novel_31439_0	chr4	+	165	1	Intergenic	novelGene_957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAATA	8841	False	NA	NA	False	NA	NA	NA	152250859	152251024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_152250900_152251000
PB_novel_31440_0	chr4	+	177	1	Intergenic	novelGene_958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	152252180	152252357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_152252200_152252400
PB_novel_31444_1	chr4	-	175	1	Intergenic	novelGene_960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	436	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGGCATTC	NA	False	NA	NA	False	NA	NA	NA	152293090	152292915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_152292900_152293100
PB_novel_31445_0	chr4	-	2284	1	Intergenic	novelGene_959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8696	False	NA	NA	False	NA	NA	NA	152282971	152280687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_152280700_152283000
PB_novel_31452_0	chr4	+	166	1	Intergenic	novelGene_961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	4020	False	NA	NA	False	NA	NA	NA	152482199	152482365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_152482200_152482400
PB_novel_31453_0	chr4	+	173	1	Intergenic	novelGene_962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	152525775	152525948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_152525800_152525900
PB_novel_31473_0	chr4	-	178	1	Intergenic	novelGene_963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	154230643	154230465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_154230500_154230600
PB_novel_31484_0	chr4	-	176	1	Intergenic	novelGene_964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	542	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	154969120	154968944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_154968900_154969100
PB_novel_31495_0	chr4	-	177	1	Intergenic	novelGene_965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTATAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	155204246	155204069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_155204100_155204200
PB_novel_31497_0	chr4	+	175	1	Intergenic	novelGene_966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	155314459	155314634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_155314500_155314600
PB_novel_31505_0	chr4	-	177	1	Intergenic	novelGene_967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAACAG	3386	False	NA	NA	False	NA	NA	NA	155394683	155394506	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_155394500_155394700
PB_novel_31510_0	chr4	+	175	1	Intergenic	novelGene_968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAAGCCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	155447884	155448059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_155447900_155448100
PB_novel_31513_0	chr4	-	171	1	Intergenic	novelGene_969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAGAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	155457918	155457747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_155457700_155457900
PB_novel_31516_0	chr4	+	180	1	Intergenic	novelGene_970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAAAAGAAGATTTC	1149	False	NA	NA	False	NA	NA	NA	155523756	155523936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_155523800_155523900
PB_novel_31527_4	chr4	-	178	1	Intergenic	novelGene_973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	155803379	155803201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_155803200_155803400
PB_novel_31534_0	chr4	-	102	1	Intergenic	novelGene_971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACTTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	155714530	155714428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_155714400_155714500
PB_novel_31542_0	chr4	+	177	1	Intergenic	novelGene_972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATTAAGTCATGT	NA	False	NA	NA	False	NA	NA	NA	155752169	155752346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_155752200_155752300
PB_novel_31560_0	chr4	-	175	1	Intergenic	novelGene_974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAGGAAAAGAAAGTA	3935	False	NA	NA	False	NA	NA	NA	155887806	155887631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_155887600_155887800
PB_novel_31561_0	chr4	-	164	1	Intergenic	novelGene_975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	155905807	155905643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_155905600_155905800
PB_novel_31564_0	chr4	+	174	1	Intergenic	novelGene_976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAATAGATTC	779	False	NA	NA	False	NA	NA	NA	156015480	156015654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_156015500_156015700
PB_novel_31565_1	chr4	+	177	1	Intergenic	novelGene_977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAAGGG	NA	False	NA	NA	False	NA	NA	NA	156054066	156054243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_156054100_156054200
PB_novel_31567_0	chr4	+	2014	1	NIC	ENSMUSG00000023286.17	novel	1309	7	NA	NA	0	-3248	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAGAAA	776	False	NA	NA	False	NA	NA	NA	156028306	156030320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr4_+_156028300_156030300
PB_novel_31570_0	chr4	-	6340	1	Antisense	novelGene_ENSMUSG00000029076.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156086273	156079933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_156079900_156086300
PB_novel_31573_0	chr4	+	182	1	Intergenic	novelGene_978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	156109179	156109361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_156109200_156109400
PB_novel_31576_0	chr4	+	176	1	Intergenic	novelGene_979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	1142	False	NA	NA	False	NA	NA	NA	156187325	156187501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_156187300_156187500
PB_novel_31577_1	chr4	+	177	1	Intergenic	novelGene_980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4735	False	NA	NA	False	NA	NA	NA	156190918	156191095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_156190900_156191100
PB_novel_31584_0	chr4	-	178	1	Intergenic	novelGene_981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	156295743	156295565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_156295600_156295700
PB_novel_31586_12	chr4	-	2051	7	Antisense	novelGene_ENSMUSG00000095567.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATCC	371	False	NA	NA	False	NA	NA	NA	156327191	156323199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_156323757_156323843_156323940_156324550_156324625_156324711_156324823_156325054_156325957_156326115_156326258_156327022
PB_novel_31586_21	chr4	-	2210	6	Antisense	novelGene_ENSMUSG00000095567.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATCC	371	False	NA	NA	False	NA	NA	NA	156327191	156323199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_156323757_156323843_156323940_156324550_156324625_156324711_156324823_156325054_156326258_156327022
PB_novel_31586_41	chr4	-	3992	1	Antisense	novelGene_ENSMUSG00000095567.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATCC	371	False	NA	NA	False	NA	NA	NA	156327191	156323199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr4_-_156323200_156327200
PB_novel_31588_0	chr4	+	180	1	Intergenic	novelGene_982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156372634	156372814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_156372600_156372800
PB_novel_31591_0	chr4	-	172	1	Intergenic	novelGene_986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156396845	156396673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_156396700_156396800
PB_novel_31593_15	chr4	+	1844	7	Intergenic	novelGene_983	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	81	junction_5	9.7581874455363	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	156390428	156410402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_156390627_156404917_156405026_156405277_156405347_156405588_156405691_156408356_156408565_156408842_156409051_156409451
PB_novel_31593_17	chr4	+	2122	6	Intergenic	novelGene_984	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	93	junction_4	6.89927532426414	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	156390428	156410402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_156390627_156404917_156405026_156405277_156405347_156405588_156405691_156408356_156409051_156409451
PB_novel_31593_8	chr4	+	1751	7	Intergenic	novelGene_985	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_2	33.1963853453957	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAATAAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	156390506	156410401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_156390627_156404917_156405012_156405277_156405347_156405588_156405691_156408356_156408565_156408842_156409051_156409451
PB_novel_31607_0	chr5	-	170	1	Intergenic	novelGene_6328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAATAAAGGTAATAG	NA	False	NA	NA	False	NA	NA	NA	3518921	3518751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_3518800_3518900
PB_novel_31608_0	chr5	+	174	1	Intergenic	novelGene_6329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAGAAGAAGGAGAAGA	4528	False	NA	NA	False	NA	NA	NA	3526790	3526964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_3526800_3527000
PB_novel_31609_0	chr5	-	1066	1	Antisense	novelGene_ENSMUSG00000040274.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGACAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3573331	3572265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_3572300_3573300
PB_novel_31612_0	chr5	-	175	1	Intergenic	novelGene_6330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAAAGAAATTG	NA	False	NA	NA	False	NA	NA	NA	3621080	3620905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_3620900_3621100
PB_novel_31623_0	chr5	+	166	1	Intergenic	novelGene_6331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGTAACTATTATA	NA	False	NA	NA	False	NA	NA	NA	3763706	3763872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_3763700_3763900
PB_novel_31627_0	chr5	+	117	1	FSM	ENSMUSG00000104699.2	ENSMUST00000199852.2	793	1	762	-86	762	86	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	3926123	3926240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_3926100_3926200
PB_novel_31632_0	chr5	-	178	1	Intergenic	novelGene_6332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAATTAGAAA	NA	False	NA	NA	False	NA	NA	NA	5751795	5751617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_5751600_5751800
PB_novel_31636_0	chr5	-	175	1	Intergenic	novelGene_6333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6679078	6678903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_6678900_6679100
PB_novel_31639_0	chr5	-	177	1	Intergenic	novelGene_6334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGTAAAAA	9839	False	NA	NA	False	NA	NA	NA	8057827	8057650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_8057600_8057800
PB_novel_31648_0	chr5	-	173	1	Intergenic	novelGene_6335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAGAACA	7737	False	NA	NA	False	NA	NA	NA	8615290	8615117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_8615100_8615300
PB_novel_31651_0	chr5	-	176	1	Intergenic	novelGene_6336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	8805323	8805147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_8805100_8805300
PB_novel_31653_0	chr5	+	177	1	Genic_Genomic	ENSMUSG00000114430.2	novel	NA	NA	NA	NA	1045	91	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	9086168	9086345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_+_9086200_9086300
PB_novel_31658_0	chr5	-	177	1	Intergenic	novelGene_6337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	231	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATC	8425	False	NA	NA	False	NA	NA	NA	9153302	9153125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_9153100_9153300
PB_novel_31667_0	chr5	+	169	1	Intergenic	novelGene_6338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	11074540	11074709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_11074500_11074700
PB_novel_31668_0	chr5	+	179	1	Intergenic	novelGene_6339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	11162081	11162260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_11162100_11162300
PB_novel_31669_0	chr5	+	185	1	Intergenic	novelGene_6340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	11629388	11629573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_11629400_11629600
PB_novel_31670_0	chr5	+	181	1	Intergenic	novelGene_6341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	11716447	11716628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_11716400_11716600
PB_novel_31672_0	chr5	-	177	1	Intergenic	novelGene_6342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12387200	12387023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_12387000_12387200
PB_novel_31677_0	chr5	-	175	1	Intergenic	novelGene_6343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12895861	12895686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_12895700_12895900
PB_novel_31681_0	chr5	+	181	1	Intergenic	novelGene_6344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12975205	12975386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_12975200_12975400
PB_novel_31682_0	chr5	-	295	1	FSM	ENSMUSG00000096810.2	ENSMUST00000179228.2	1002	1	887	-180	887	180	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAAATTTCTACAA	NA	False	NA	NA	False	AATAAA	-14	NA	13092514	13092219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_13092200_13092500
PB_novel_31693_0	chr5	-	183	1	Intergenic	novelGene_6345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16297405	16297222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_16297200_16297400
PB_novel_31702_0	chr5	+	176	1	Intergenic	novelGene_6346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	4819	False	NA	NA	False	NA	NA	NA	20122375	20122551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_20122400_20122600
PB_novel_31705_0	chr5	-	181	1	Intergenic	novelGene_6347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAAATAACATA	NA	False	NA	NA	False	NA	NA	NA	20835090	20834909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_20834900_20835100
PB_novel_31711_0	chr5	-	176	1	Intergenic	novelGene_6348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGAGTAC	NA	False	NA	NA	False	NA	NA	NA	21015096	21014920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_21014900_21015100
PB_novel_31715_0	chr5	+	177	1	Intergenic	novelGene_6349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21052596	21052773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_21052600_21052800
PB_novel_31716_0	chr5	-	160	1	Intergenic	novelGene_6350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	2687	False	NA	NA	False	NA	NA	NA	21053325	21053165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_21053200_21053300
PB_novel_31717_0	chr5	+	135	1	Intergenic	novelGene_6351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21084880	21085015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_21084900_21085000
PB_novel_31719_0	chr5	+	181	1	Intergenic	novelGene_6352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21111449	21111630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_21111400_21111600
PB_novel_31721_0	chr5	-	160	1	Intergenic	novelGene_6353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAATAAATAAACAAAT	NA	False	NA	NA	False	NA	NA	NA	21142749	21142589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_21142600_21142700
PB_novel_31729_0	chr5	+	175	1	Intergenic	novelGene_6354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAATGTGG	NA	False	NA	NA	False	NA	NA	NA	21181536	21181711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_21181500_21181700
PB_novel_31730_0	chr5	+	184	1	Intergenic	novelGene_6355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGAGTG	3191	False	NA	NA	False	NA	NA	NA	21189573	21189757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_21189600_21189800
PB_novel_31732_0	chr5	+	172	1	Intergenic	novelGene_6356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAATGTTTG	NA	False	NA	NA	False	NA	NA	NA	21232792	21232964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_21232800_21233000
PB_novel_31747_0	chr5	-	157	1	Intergenic	novelGene_6357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	22175265	22175108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_22175100_22175300
PB_novel_31749_0	chr5	-	172	1	Intergenic	novelGene_6358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	22710158	22709986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_22710000_22710200
PB_novel_31750_0	chr5	+	181	1	Intergenic	novelGene_6359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22736608	22736789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_22736600_22736800
PB_novel_31754_0	chr5	+	177	1	Intergenic	novelGene_6360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAATGCAAACC	NA	False	NA	NA	False	NA	NA	NA	23277774	23277951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_23277800_23278000
PB_novel_31756_0	chr5	-	98	1	Intergenic	novelGene_6361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATGAATAAATAAATAATT	NA	False	NA	NA	False	NA	NA	NA	23570277	23570179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_23570200_23570300
PB_novel_31763_0	chr5	-	177	1	Intergenic	novelGene_6362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23655910	23655733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_23655700_23655900
PB_novel_31764_0	chr5	+	174	1	Intergenic	novelGene_6363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAGAAAAGAAAA	2119	False	NA	NA	False	NA	NA	NA	23678240	23678414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_23678200_23678400
PB_novel_31765_0	chr5	+	168	1	Intergenic	novelGene_6364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	23742606	23742774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_23742600_23742800
PB_novel_31786_0	chr5	+	3215	1	FSM	ENSMUSG00000118905.1	ENSMUST00000175580.3	71	1	-503	-2641	-503	2641	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	24056704	24059919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_24056700_24059900
PB_novel_31790_0	chr5	+	174	1	Intergenic	novelGene_6365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	24221290	24221464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_24221300_24221500
PB_novel_31791_0	chr5	+	153	1	Intergenic	novelGene_6366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAAGAAAAT	2757	False	NA	NA	False	NA	NA	NA	24259519	24259672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_24259500_24259700
PB_novel_31793_0	chr5	-	898	1	FSM	ENSMUSG00000106133.2	ENSMUST00000197957.2	349	1	-43	-506	-43	506	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGGCAAAAAAAAAAAAAA	5872	False	NA	NA	False	AATAAA	-11	NA	24323705	24322807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_24322800_24323700
PB_novel_31796_0	chr5	+	192	1	Intergenic	novelGene_6367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAATTAGAAGACAAAA	NA	False	NA	NA	False	NA	NA	NA	24352382	24352574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_24352400_24352600
PB_novel_31803_0	chr5	+	322	1	Intergenic	novelGene_6368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	24462311	24462633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_24462300_24462600
PB_novel_31805_2	chr5	+	1683	3	Antisense	novelGene_ENSMUSG00000038295.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	4908	False	NA	NA	False	NA	NA	NA	24592059	24594146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_24592124_24592382_24592544_24592688
PB_novel_31805_3	chr5	+	2087	1	Antisense	novelGene_ENSMUSG00000038295.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	4908	False	NA	NA	False	NA	NA	NA	24592059	24594146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_24592100_24594100
PB_novel_31806_0	chr5	-	174	1	Intergenic	novelGene_6369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAAAAAAAAAGCT	4788	False	NA	NA	False	NA	NA	NA	24601571	24601397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_24601400_24601600
PB_novel_31808_0	chr5	-	176	1	Intergenic	novelGene_6370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAATAAATAAACACA	7871	False	NA	NA	False	NA	NA	NA	24677555	24677379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_24677400_24677600
PB_novel_31816_1	chr5	+	2530	1	Antisense	novelGene_ENSMUSG00000028949.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24800130	24802660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_24800100_24802700
PB_novel_31818_0	chr5	+	176	1	Intergenic	novelGene_6371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	6626	False	NA	NA	False	NA	NA	NA	24849620	24849796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_24849600_24849800
PB_novel_31820_0	chr5	+	171	1	Intergenic	novelGene_6372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATCTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24886187	24886358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_24886200_24886400
PB_novel_31825_0	chr5	+	173	1	Intergenic	novelGene_6373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATAAAATAATAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	24963756	24963929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_24963800_24963900
PB_novel_31841_0	chr5	+	169	1	Intergenic	novelGene_6375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAGTAGTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25728925	25729094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_25728900_25729100
PB_novel_31849_0	chr5	+	2732	1	Intergenic	novelGene_6376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25868017	25870749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_25868000_25870700
PB_novel_31857_0	chr5	+	157	1	Intergenic	novelGene_6377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATGAATAAATC	NA	False	NA	NA	False	NA	NA	NA	26403787	26403944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_26403800_26403900
PB_novel_31858_0	chr5	+	188	1	Intergenic	novelGene_6378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATAAATATTTTTTA	NA	False	NA	NA	False	NA	NA	NA	26997007	26997195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_26997000_26997200
PB_novel_31879_0	chr5	-	176	1	Intergenic	novelGene_6379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	28860694	28860518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_28860500_28860700
PB_novel_31882_0	chr5	+	3652	1	Intergenic	novelGene_6380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCCAAAAAAAAAAAAAAAA	8021	False	NA	NA	False	NA	NA	NA	29442728	29446380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_29442700_29446400
PB_novel_31885_0	chr5	+	173	1	Intergenic	novelGene_6381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	29653430	29653603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_29653400_29653600
PB_novel_31891_0	chr5	-	204	1	Intergenic	novelGene_6382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	577	False	NA	NA	False	NA	NA	NA	29794640	29794436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_29794400_29794600
PB_novel_31892_0	chr5	+	211	1	Intergenic	novelGene_6383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29823279	29823490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_29823300_29823500
PB_novel_31894_0	chr5	+	171	1	Intergenic	novelGene_6384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATCTTTTTTAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	29882648	29882819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_29882600_29882800
PB_novel_31895_0	chr5	+	187	1	Intergenic	novelGene_6385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29888331	29888518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_29888300_29888500
PB_novel_31900_0	chr5	+	173	1	Intergenic	novelGene_6386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	29916185	29916358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_29916200_29916400
PB_novel_31902_0	chr5	-	177	1	Intergenic	novelGene_6388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATTGTAT	NA	False	NA	NA	False	NA	NA	NA	29933703	29933526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_29933500_29933700
PB_novel_31903_0	chr5	-	161	1	Intergenic	novelGene_6387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	29922558	29922397	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_29922400_29922600
PB_novel_31911_0	chr5	+	175	1	Intergenic	novelGene_6389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	3571	False	NA	NA	False	NA	NA	NA	30147808	30147983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_30147800_30148000
PB_novel_31915_0	chr5	-	177	1	Intergenic	novelGene_6390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATGATTAGGA	NA	False	NA	NA	False	NA	NA	NA	30246192	30246015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_30246000_30246200
PB_novel_31917_0	chr5	-	176	1	Intergenic	novelGene_6391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30267916	30267740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_30267700_30267900
PB_novel_31932_0	chr5	-	173	1	Intergenic	novelGene_6393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	30663720	30663547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_30663500_30663700
PB_novel_31941_0	chr5	+	177	1	Intergenic	novelGene_6394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGCAGTAA	NA	False	NA	NA	False	NA	NA	NA	30986980	30987157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_30987000_30987200
PB_novel_31943_0	chr5	+	176	1	Intergenic	novelGene_6395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGACGAGGAAG	NA	False	NA	NA	False	NA	NA	NA	31000274	31000450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_31000300_31000400
PB_novel_31945_0	chr5	+	175	1	Intergenic	novelGene_6396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGATCATAG	NA	False	NA	NA	False	NA	NA	NA	31014361	31014536	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_31014400_31014500
PB_novel_31949_0	chr5	+	162	1	Intergenic	novelGene_6397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	331	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAAAAAATATTTTTT	NA	False	NA	-10	True	NA	NA	NA	31067428	31067590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_31067400_31067600
PB_novel_31952_1	chr5	+	161	1	Intergenic	novelGene_6398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAATAAATAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	31142164	31142325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_31142200_31142300
PB_novel_31953_0	chr5	+	131	2	Intergenic	novelGene_6399	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAGAGAGAGAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	31143386	31143854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_31143424_31143760
PB_novel_31954_0	chr5	+	171	1	Intergenic	novelGene_6400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	31167350	31167521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_31167400_31167500
PB_novel_31955_0	chr5	-	176	1	Intergenic	novelGene_6401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	573	False	NA	NA	False	NA	NA	NA	31179561	31179385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_31179400_31179600
PB_novel_31962_0	chr5	-	185	1	Intergenic	novelGene_6402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATAGGT	NA	False	NA	NA	False	NA	NA	NA	31223035	31222850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_31222800_31223000
PB_novel_31964_0	chr5	+	171	1	Intergenic	novelGene_6403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATAATTTAATTAAAT	6175	False	NA	NA	False	NA	NA	NA	31258091	31258262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_31258100_31258300
PB_novel_31967_0	chr5	-	179	1	Intergenic	novelGene_6404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	31275711	31275532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_31275500_31275700
PB_novel_31972_0	chr5	+	176	1	Intergenic	novelGene_6405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAATAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	31329127	31329303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_31329100_31329300
PB_novel_31973_0	chr5	+	4625	1	Antisense	novelGene_ENSMUSG00000101678.4_AS_novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31336755	31341380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_31336800_31341400
PB_novel_31975_0	chr5	+	176	1	Intergenic	novelGene_6406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	31346468	31346644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_31346500_31346600
PB_novel_31983_0	chr5	+	181	1	Intergenic	novelGene_6407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31428112	31428293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_31428100_31428300
PB_novel_31990_0	chr5	+	176	1	Intergenic	novelGene_6408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	31651061	31651237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_31651100_31651200
PB_novel_31991_0	chr5	-	2528	1	Antisense	novelGene_ENSMUSG00000064037.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAATAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31665658	31663130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_31663100_31665700
PB_novel_32002_0	chr5	-	1215	1	Intergenic	novelGene_6409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31777517	31776302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_31776300_31777500
PB_novel_32007_0	chr5	-	1415	1	NIC	ENSMUSG00000029136.10	novel	1042	8	NA	NA	13	-36155	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31854958	31853543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_31853500_31855000
PB_novel_32008_0	chr5	-	177	1	Intergenic	novelGene_6410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	31902805	31902628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_31902600_31902800
PB_novel_32021_0	chr5	+	181	1	Intergenic	novelGene_6411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGCATTTTGAGGTT	NA	False	NA	NA	False	NA	NA	NA	32669904	32670085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_32669900_32670100
PB_novel_32023_0	chr5	+	190	1	Intergenic	novelGene_6412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATCTAAAAAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	32694400	32694590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_32694400_32694600
PB_novel_32025_0	chr5	-	175	1	Intergenic	novelGene_6413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	32712790	32712615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_32712600_32712800
PB_novel_32032_0	chr5	+	177	1	Intergenic	novelGene_6414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAAAATATTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	32778779	32778956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_32778800_32779000
PB_novel_32035_0	chr5	-	171	1	Intergenic	novelGene_6415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCTTTAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	32790413	32790242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_32790200_32790400
PB_novel_32036_0	chr5	-	4610	1	Antisense	novelGene_ENSMUSG00000014932.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	AAAACA	-6	NA	32799221	32794611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_32794600_32799200
PB_novel_32043_0	chr5	+	400	1	Intergenic	novelGene_6416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAAAAAGAT	9004	False	NA	NA	False	NA	NA	NA	32918348	32918748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_32918300_32918700
PB_novel_32051_0	chr5	+	176	1	Intergenic	novelGene_6417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	32964108	32964284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_32964100_32964300
PB_novel_32055_0	chr5	+	1852	1	Intergenic	novelGene_6418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	528	False	NA	NA	False	NA	NA	NA	32979671	32981523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_32979700_32981500
PB_novel_32056_0	chr5	+	182	1	Intergenic	novelGene_6419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAAAAAAAG	2538	False	NA	NA	False	NA	NA	NA	32981681	32981863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_32981700_32981900
PB_novel_32057_1	chr5	+	176	1	Intergenic	novelGene_6420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAATATG	NA	False	NA	NA	False	NA	NA	NA	33012851	33013027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_33012900_33013000
PB_novel_32059_0	chr5	+	1541	1	Antisense	novelGene_ENSMUSG00000054280.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33008736	33010277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_33008700_33010300
PB_novel_32060_0	chr5	-	1654	1	NIC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	-1	-16968	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAAACA	7070	False	NA	NA	False	NA	NA	NA	33011583	33009929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_33009900_33011600
PB_novel_32062_0	chr5	-	2611	1	Intergenic	novelGene_6421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACCAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	33029398	33026787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_33026800_33029400
PB_novel_32067_0	chr5	-	174	1	Intergenic	novelGene_6422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33077218	33077044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_33077000_33077200
PB_novel_32068_0	chr5	-	174	1	Intergenic	novelGene_6423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAAATAAAATCA	NA	False	NA	NA	False	NA	NA	NA	33078402	33078228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_33078200_33078400
PB_novel_32076_0	chr5	-	175	1	Intergenic	novelGene_6424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5885	False	NA	NA	False	NA	NA	NA	33269233	33269058	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_33269100_33269200
PB_novel_32078_0	chr5	+	192	1	Intergenic	novelGene_6425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	AATAAA	-43	NA	33356382	33356574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_33356400_33356600
PB_novel_32079_0	chr5	+	159	1	Intergenic	novelGene_6426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAATAAATAAATCTTA	NA	False	NA	NA	False	NA	NA	NA	33439562	33439721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_33439600_33439700
PB_novel_32081_0	chr5	+	179	1	Intergenic	novelGene_6427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGAAAACGTGATA	NA	False	NA	NA	False	NA	NA	NA	33512884	33513063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_33512900_33513100
PB_novel_32083_0	chr5	-	172	1	Intergenic	novelGene_6428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	33548034	33547862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_33547900_33548000
PB_novel_32085_0	chr5	+	169	1	Intergenic	novelGene_6429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAATAAACCAATGATC	NA	False	NA	NA	False	NA	NA	NA	33604724	33604893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_33604700_33604900
PB_novel_32091_0	chr5	-	3262	2	Intergenic	novelGene_6431	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTCAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33692821	33689489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_33689998_33690067
PB_novel_32091_7	chr5	-	3351	1	Intergenic	novelGene_6430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAGAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	33692838	33689487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_33689500_33692800
PB_novel_32093_0	chr5	+	169	1	Intergenic	novelGene_6432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTTTAAAAAAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	33749634	33749803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_33749600_33749800
PB_novel_32097_0	chr5	+	169	1	Antisense	novelGene_ENSMUSG00000004642.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	6692	False	NA	NA	False	NA	NA	NA	33806274	33806443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_33806300_33806400
PB_novel_32098_0	chr5	-	2400	1	NIC	ENSMUSG00000004642.14	novel	1027	8	NA	NA	-12	1706	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	33809662	33807262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_33807300_33809700
PB_novel_32102_0	chr5	-	168	1	Intergenic	novelGene_6433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATACATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	33868743	33868575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_33868600_33868700
PB_novel_32108_0	chr5	-	1860	1	Intergenic	novelGene_6434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GTCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33977679	33975819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_33975800_33977700
PB_novel_32121_0	chr5	-	176	1	Intergenic	novelGene_6435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGTTTCA	6175	False	NA	NA	False	NA	NA	NA	34489137	34488961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_34489000_34489100
PB_novel_32122_0	chr5	+	156	1	Intergenic	novelGene_6436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATCTTTTAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	34489840	34489996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_34489800_34490000
PB_novel_32123_0	chr5	-	3167	1	Intergenic	novelGene_6437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAGAAAAAA	7285	False	NA	NA	False	NA	NA	NA	34493548	34490381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_34490400_34493500
PB_novel_32129_0	chr5	-	3417	1	Intergenic	novelGene_6438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACCCAAAAAAAAAAAAA	7699	False	NA	NA	False	NA	NA	NA	34518463	34515046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_34515000_34518500
PB_novel_32134_0	chr5	-	158	1	Intergenic	novelGene_6439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	34544255	34544097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_34544100_34544300
PB_novel_32135_0	chr5	-	173	1	Intergenic	novelGene_6440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	302	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34546511	34546338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_34546300_34546500
PB_novel_32144_0	chr5	-	1030	1	Intergenic	novelGene_6441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-40	NA	34743359	34742329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_34742300_34743400
PB_novel_32157_0	chr5	-	161	1	Intergenic	novelGene_6442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATTTAAAAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	35121146	35120985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_35121000_35121100
PB_novel_32159_0	chr5	-	157	1	Intergenic	novelGene_6443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATCTTAA	NA	False	NA	NA	False	NA	NA	NA	35251810	35251653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_35251700_35251800
PB_novel_32160_0	chr5	+	170	1	Intergenic	novelGene_6444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	35383421	35383591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_35383400_35383600
PB_novel_32164_0	chr5	-	176	1	Intergenic	novelGene_6445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGGAAAAAGAAAAGAA	3259	False	NA	NA	False	NA	NA	NA	35736781	35736605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_35736600_35736800
PB_novel_32168_0	chr5	+	178	1	Intergenic	novelGene_6446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATGTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35909493	35909671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_35909500_35909700
PB_novel_32170_0	chr5	+	2576	1	NIC	ENSMUSG00000029095.18	novel	3042	19	NA	NA	189	914	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35998886	36001462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_35998900_36001500
PB_novel_32171_0	chr5	+	211	1	Intergenic	novelGene_6447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36028367	36028578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_36028400_36028600
PB_novel_32172_4	chr5	+	172	2	Intergenic	novelGene_6448	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	36028367	36092473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_36028492_36092425
PB_novel_32179_0	chr5	+	1458	1	Antisense	novelGene_ENSMUSG00000029192.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAACCACCTAT	NA	False	NA	NA	False	NA	NA	NA	36687320	36688778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_36687300_36688800
PB_novel_32182_0	chr5	+	175	1	Intergenic	novelGene_6449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTTCAAAGCA	NA	False	NA	NA	False	NA	NA	NA	36746052	36746227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_36746100_36746200
PB_novel_32183_0	chr5	-	185	1	Intergenic	novelGene_6450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAATACAATGAGC	2092	False	NA	NA	False	NA	NA	NA	36746574	36746389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_36746400_36746600
PB_novel_32186_0	chr5	+	176	1	Intergenic	novelGene_6451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAATAAC	NA	False	NA	NA	False	NA	NA	NA	36912052	36912228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_36912100_36912200
PB_novel_32188_0	chr5	+	168	1	Intergenic	novelGene_6452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAAATCTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36969647	36969815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_36969600_36969800
PB_novel_32189_0	chr5	-	152	1	Intergenic	novelGene_6453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATACAGAGTTCTA	NA	False	NA	NA	False	NA	NA	NA	37048742	37048590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_37048600_37048700
PB_novel_32198_0	chr5	-	169	1	Intergenic	novelGene_6454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	37422424	37422255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_37422300_37422400
PB_novel_32199_0	chr5	+	169	1	Intergenic	novelGene_6455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37622527	37622696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_37622500_37622700
PB_novel_32201_0	chr5	-	186	1	Intergenic	novelGene_6456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAATAAATAATAATA	NA	False	NA	NA	False	NA	NA	NA	37947213	37947027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_37947000_37947200
PB_novel_32202_0	chr5	+	178	1	Intergenic	novelGene_6457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	38034565	38034743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_38034600_38034700
PB_novel_32203_0	chr5	+	177	1	Intergenic	novelGene_6458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38075967	38076144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_38076000_38076100
PB_novel_32208_0	chr5	+	140	1	Intergenic	novelGene_6459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAGGAAAAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	38593285	38593425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_38593300_38593400
PB_novel_32217_0	chr5	-	5264	1	NIC	ENSMUSG00000046572.11	novel	6816	3	NA	NA	0	-4860	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38842093	38836829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_38836800_38842100
PB_novel_32239_0	chr5	+	171	1	Intergenic	novelGene_6460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAAAAATGGTAATAG	NA	False	NA	NA	False	NA	NA	NA	43710067	43710238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_43710100_43710200
PB_novel_32249_0	chr5	-	166	1	Intergenic	novelGene_6461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGACG	9308	False	NA	NA	False	NA	NA	NA	44080240	44080074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_44080100_44080200
PB_novel_32260_0	chr5	+	4652	1	NIC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	3754	-2629	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAACCAAAAAAAAAAAAA	2790	False	NA	NA	False	NA	NA	NA	45661434	45666086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_45661400_45666100
PB_novel_32262_0	chr5	-	2375	1	Antisense	novelGene_ENSMUSG00000015804.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45683781	45681406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_45681400_45683800
PB_novel_32267_0	chr5	+	6825	1	Intergenic	novelGene_6462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46005159	46011984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_46005200_46012000
PB_novel_32276_0	chr5	-	217	1	Intergenic	novelGene_6463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	50610734	50610517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_50610500_50610700
PB_novel_32280_0	chr5	+	1662	1	Intergenic	novelGene_6464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-2	NA	52335331	52336993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_52335300_52337000
PB_novel_32281_0	chr5	-	177	1	Intergenic	novelGene_6465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAAAGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	52434485	52434308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_52434300_52434500
PB_novel_32286_0	chr5	-	2837	1	Antisense	novelGene_ENSMUSG00000029179.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52944443	52941606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_52941600_52944400
PB_novel_32297_0	chr5	-	174	1	Antisense	novelGene_ENSMUSG00000039191.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53758303	53758129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_53758100_53758300
PB_novel_32298_0	chr5	-	172	1	Intergenic	novelGene_6466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	53804108	53803936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_53803900_53804100
PB_novel_32300_0	chr5	+	174	1	Intergenic	novelGene_6467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAATAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	53824307	53824481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_53824300_53824500
PB_novel_32304_0	chr5	-	165	1	Intergenic	novelGene_6468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	54142101	54141936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_54141900_54142100
PB_novel_32310_0	chr5	+	175	1	Intergenic	novelGene_6470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATATATATATAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	55762017	55762192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_55762000_55762200
PB_novel_32326_0	chr5	+	182	1	Intergenic	novelGene_6471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGACATTGAGAC	NA	False	NA	NA	False	NA	NA	NA	63770974	63771156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_63771000_63771200
PB_novel_32327_0	chr5	+	175	1	Intergenic	novelGene_6472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAATTTTAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	63803305	63803480	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_63803300_63803500
PB_novel_32336_0	chr5	+	168	1	Intergenic	novelGene_6473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAACAAAACAAAACAA	810	False	NA	NA	False	NA	NA	NA	64380035	64380203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_64380000_64380200
PB_novel_32338_0	chr5	-	186	1	Intergenic	novelGene_6474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAACAAATCATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	64409842	64409656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_64409700_64409800
PB_novel_32357_0	chr5	-	4820	1	Antisense	novelGene_ENSMUSG00000029178.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-18	NA	64983119	64978299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_64978300_64983100
PB_novel_32362_0	chr5	+	157	1	Intergenic	novelGene_6475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACAGT	NA	False	NA	NA	False	NA	NA	NA	65060736	65060893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_65060700_65060900
PB_novel_32364_0	chr5	-	163	1	Intergenic	novelGene_6476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAAACCC	NA	False	NA	NA	False	NA	NA	NA	65174324	65174161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_65174200_65174300
PB_novel_32366_0	chr5	-	3335	1	NIC	ENSMUSG00000037913.13	novel	1012	8	NA	NA	33899	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65215028	65211693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_65211700_65215000
PB_novel_32373_0	chr5	+	180	1	Intergenic	novelGene_6477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	65489913	65490093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_65489900_65490100
PB_novel_32374_0	chr5	-	184	1	Intergenic	novelGene_6478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAAATATAT	NA	False	NA	NA	False	NA	NA	NA	65496822	65496638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_65496600_65496800
PB_novel_32381_0	chr5	-	3334	1	Antisense	novelGene_ENSMUSG00000029199.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-35	NA	65553323	65549989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_65550000_65553300
PB_novel_32384_0	chr5	-	174	1	Intergenic	novelGene_6479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATATAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	65572546	65572372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_65572400_65572500
PB_novel_32385_0	chr5	+	173	1	Intergenic	novelGene_6480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	405	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGGG	3957	False	NA	NA	False	NA	NA	NA	65582969	65583142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_65583000_65583100
PB_novel_32388_0	chr5	+	160	1	Intergenic	novelGene_6481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	65628058	65628218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_65628100_65628200
PB_novel_32394_0	chr5	+	167	1	Antisense	novelGene_ENSMUSG00000105601.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATATAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65692990	65693157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_65693000_65693200
PB_novel_32395_0	chr5	-	135	1	Intergenic	novelGene_6482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAAGTAAAAA	4630	False	NA	NA	False	NA	NA	NA	65693582	65693447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_65693400_65693600
PB_novel_32397_0	chr5	-	169	1	Intergenic	novelGene_6483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65710800	65710631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_65710600_65710800
PB_novel_32401_0	chr5	-	180	1	Intergenic	novelGene_6484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAAAATACA	8840	False	NA	NA	False	NA	NA	NA	65743323	65743143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_65743100_65743300
PB_novel_32407_0	chr5	-	156	1	Antisense	novelGene_ENSMUSG00000106696.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65784138	65783982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_65784000_65784100
PB_novel_32410_0	chr5	-	172	1	Intergenic	novelGene_6485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	5034	False	NA	NA	False	NA	NA	NA	65853223	65853051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_65853100_65853200
PB_novel_32414_1	chr5	-	172	1	Intergenic	novelGene_6486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65900434	65900262	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_65900300_65900400
PB_novel_32415_0	chr5	-	165	1	Intergenic	novelGene_6488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAGA	4565	False	NA	NA	False	NA	NA	NA	65924686	65924521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_65924500_65924700
PB_novel_32417_0	chr5	-	184	1	Intergenic	novelGene_6487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTAAAGCAAGCT	4967	False	NA	NA	False	NA	NA	NA	65924284	65924100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_65924100_65924300
PB_novel_32420_0	chr5	-	175	2	Antisense	novelGene_ENSMUSG00000106682.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	19	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATCCAAGACAA	NA	False	NA	NA	False	NA	NA	NA	65961573	65931287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_65931415_65961525
PB_novel_32420_1	chr5	-	176	1	Intergenic	novelGene_6489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATCCAAGACAA	4195	False	NA	NA	False	NA	NA	NA	65931463	65931287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_65931300_65931500
PB_novel_32431_0	chr5	-	181	1	Intergenic	novelGene_6490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAAGGTAGAGAC	9905	False	NA	NA	False	NA	NA	NA	66141028	66140847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_66140800_66141000
PB_novel_32434_0	chr5	+	176	1	Antisense	novelGene_ENSMUSG00000107304.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	66228644	66228820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_66228600_66228800
PB_novel_32441_1	chr5	-	173	1	Intergenic	novelGene_6491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	462	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATGGATT	NA	False	NA	NA	False	NA	NA	NA	66366389	66366216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_66366200_66366400
PB_novel_32445_0	chr5	-	172	1	Intergenic	novelGene_6492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	66398819	66398647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_66398600_66398800
PB_novel_32452_0	chr5	-	176	1	Intergenic	novelGene_6493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATACTTATTAAGAAAA	1075	False	NA	NA	False	NA	NA	NA	66593973	66593797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_66593800_66594000
PB_novel_32473_0	chr5	+	1357	1	Intergenic	novelGene_6494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGGCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-44	NA	67581144	67582501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_67581100_67582500
PB_novel_32474_0	chr5	-	183	1	Intergenic	novelGene_6495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGAAAGGACAGAACCAAC	NA	False	NA	NA	False	NA	NA	NA	67591839	67591656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_67591700_67591800
PB_novel_32484_0	chr5	+	627	1	Intergenic	novelGene_6496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67911705	67912332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_67911700_67912300
PB_novel_32486_0	chr5	-	164	1	Intergenic	novelGene_6497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAACAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	67918883	67918719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_67918700_67918900
PB_novel_32505_0	chr5	-	168	1	Intergenic	novelGene_6498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACCATGAATTG	NA	False	NA	NA	False	NA	NA	NA	73043888	73043720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_73043700_73043900
PB_novel_32507_0	chr5	+	177	1	Intergenic	novelGene_6499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATAAAAGAGCTGGAT	NA	False	NA	NA	False	NA	NA	NA	73064334	73064511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_73064300_73064500
PB_novel_32508_0	chr5	-	176	1	Intergenic	novelGene_6500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73067187	73067011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_73067000_73067200
PB_novel_32509_0	chr5	-	184	1	Intergenic	novelGene_6501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAATGCA	NA	False	NA	NA	False	NA	NA	NA	73078336	73078152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_73078200_73078300
PB_novel_32516_0	chr5	+	150	1	Intergenic	novelGene_6502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATCTTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	73341925	73342075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_73341900_73342100
PB_novel_32518_0	chr5	+	158	1	Intergenic	novelGene_6503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATCAAAA	NA	False	NA	NA	False	NA	NA	NA	73397234	73397392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_73397200_73397400
PB_novel_32520_0	chr5	-	162	1	Intergenic	novelGene_6504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAACAAATAA	NA	False	NA	NA	False	NA	NA	NA	73418131	73417969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_73418000_73418100
PB_novel_32521_0	chr5	+	199	1	Intergenic	novelGene_6505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAGAATAGAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	73424378	73424577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_73424400_73424600
PB_novel_32527_0	chr5	-	176	1	Intergenic	novelGene_6506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAACATGGAT	NA	False	NA	NA	False	NA	NA	NA	73487494	73487318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_73487300_73487500
PB_novel_32534_0	chr5	+	177	1	Intergenic	novelGene_6507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGAAACTATTAAAA	4343	False	NA	NA	False	NA	NA	NA	73636678	73636855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_73636700_73636900
PB_novel_32536_0	chr5	-	173	1	Intergenic	novelGene_6508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	73664676	73664503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_73664500_73664700
PB_novel_32551_0	chr5	+	4338	1	Antisense	novelGene_ENSMUSG00000062110.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	74551969	74556307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_74552000_74556300
PB_novel_32552_0	chr5	-	3460	1	Intergenic	novelGene_6509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74745371	74741911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_74741900_74745400
PB_novel_32553_0	chr5	-	169	1	Intergenic	novelGene_6510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATTAAAAAAAACCAAACA	NA	False	NA	NA	False	NA	NA	NA	74760776	74760607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_74760600_74760800
PB_novel_32557_1	chr5	-	177	1	Intergenic	novelGene_6511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	75268516	75268339	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_75268300_75268500
PB_novel_32559_0	chr5	+	165	1	Intergenic	novelGene_6512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAACAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	75298011	75298176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_75298000_75298200
PB_novel_32572_0	chr5	-	177	1	Intergenic	novelGene_6513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	8082	False	NA	NA	False	NA	NA	NA	76265914	76265737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_76265700_76265900
PB_novel_32574_0	chr5	-	1190	1	FSM	ENSMUSG00000106831.2	ENSMUST00000201768.2	459	1	-31	-700	-31	700	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-18	NA	76380948	76379758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_76379800_76380900
PB_novel_32576_0	chr5	-	155	1	Intergenic	novelGene_6514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAATAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	76551259	76551104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_76551100_76551300
PB_novel_32577_0	chr5	-	174	1	Intergenic	novelGene_6515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAGACAAGGAAATA	NA	False	NA	NA	False	NA	NA	NA	76553821	76553647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_76553600_76553800
PB_novel_32579_0	chr5	-	208	1	Intergenic	novelGene_6516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76794784	76794576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_76794600_76794800
PB_novel_32594_0	chr5	+	3507	1	Intergenic	novelGene_6517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	77088739	77092246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_77088700_77092200
PB_novel_32597_0	chr5	-	174	1	Intergenic	novelGene_6518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTTAAAAAAAAAGTACAAT	NA	False	NA	NA	False	NA	NA	NA	77124094	77123920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_77123900_77124100
PB_novel_32601_0	chr5	+	174	1	Intergenic	novelGene_6519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAGAAAAAGAAAGAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	77244295	77244469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_77244300_77244500
PB_novel_32605_0	chr5	-	168	1	Intergenic	novelGene_6520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATCTTAAAAAAAAAAAA	7414	False	NA	NA	False	NA	NA	NA	77343942	77343774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_77343800_77343900
PB_novel_32606_0	chr5	+	176	1	Intergenic	novelGene_6521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	77372714	77372890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_77372700_77372900
PB_novel_32607_0	chr5	-	175	1	Intergenic	novelGene_6525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAACAGTTAAG	NA	False	NA	NA	False	NA	NA	NA	77424907	77424732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_77424700_77424900
PB_novel_32608_1	chr5	-	178	1	Intergenic	novelGene_6528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCACTGA	NA	False	NA	NA	False	NA	NA	NA	77471247	77471069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_77471100_77471200
PB_novel_32612_0	chr5	-	174	1	Intergenic	novelGene_6522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAATTAAAAACA	NA	False	NA	NA	False	NA	NA	NA	77396969	77396795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_77396800_77397000
PB_novel_32613_0	chr5	+	177	1	Intergenic	novelGene_6523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAGAAA	104	False	NA	NA	False	NA	NA	NA	77407681	77407858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_77407700_77407900
PB_novel_32614_0	chr5	-	171	1	Intergenic	novelGene_6524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77417262	77417091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_77417100_77417300
PB_novel_32616_0	chr5	-	186	1	Intergenic	novelGene_6526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATACTTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77444462	77444276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_77444300_77444500
PB_novel_32617_0	chr5	+	177	1	Intergenic	novelGene_6527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATAAAGG	NA	False	NA	NA	False	NA	NA	NA	77448093	77448270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_77448100_77448300
PB_novel_32621_0	chr5	-	174	1	Intergenic	novelGene_6529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	77493963	77493789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_77493800_77494000
PB_novel_32626_0	chr5	-	170	1	Intergenic	novelGene_6530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79313723	79313553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_79313600_79313700
PB_novel_32627_0	chr5	-	402	1	Intergenic	novelGene_6531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAAAAATGTTTTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	79786318	79785916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_79785900_79786300
PB_novel_32628_0	chr5	-	172	1	Intergenic	novelGene_6532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80851215	80851043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_80851000_80851200
PB_novel_32641_0	chr5	+	177	1	Intergenic	novelGene_6533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	85906610	85906787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_85906600_85906800
PB_novel_32643_0	chr5	+	173	1	Intergenic	novelGene_6534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	305	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86034790	86034963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_86034800_86035000
PB_novel_32644_0	chr5	+	179	1	Intergenic	novelGene_6535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAGAACC	2726	False	NA	NA	False	NA	NA	NA	86074471	86074650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_86074500_86074600
PB_novel_32649_0	chr5	+	171	1	Intergenic	novelGene_6536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGTAAATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	86281543	86281714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_86281500_86281700
PB_novel_32650_0	chr5	+	177	1	Intergenic	novelGene_6537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86286452	86286629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_86286500_86286600
PB_novel_32651_0	chr5	+	175	1	Intergenic	novelGene_6538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAATAAAGTGG	NA	False	NA	NA	False	NA	NA	NA	86298886	86299061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_86298900_86299100
PB_novel_32653_0	chr5	+	1787	1	Antisense	novelGene_ENSMUSG00000035898.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	86311692	86313479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_86311700_86313500
PB_novel_32654_0	chr5	+	7295	2	Antisense	novelGene_ENSMUSG00000035898.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAACCAAAAAAGAATAG	NA	False	NA	NA	False	NA	NA	NA	86311692	86319116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_86317160_86317288
PB_novel_32655_0	chr5	-	170	1	Intergenic	novelGene_6539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATCTTTTTAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	86376779	86376609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_86376600_86376800
PB_novel_32657_0	chr5	-	184	1	Intergenic	novelGene_6540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAATAGCTATGAAAAG	NA	False	NA	NA	False	NA	NA	NA	86591606	86591422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_86591400_86591600
PB_novel_32665_0	chr5	+	176	1	Intergenic	novelGene_6541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAATTTGTTA	1690	False	NA	NA	False	NA	NA	NA	88570162	88570338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_88570200_88570300
PB_novel_32668_0	chr5	+	180	1	Intergenic	novelGene_6542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAAACCAAT	NA	False	NA	NA	False	NA	NA	NA	88813029	88813209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_88813000_88813200
PB_novel_32676_0	chr5	+	161	1	Intergenic	novelGene_6543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAATAAATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	88855474	88855635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_88855500_88855600
PB_novel_32688_0	chr5	-	177	1	Intergenic	novelGene_6544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAATTAAACATC	NA	False	NA	NA	False	NA	NA	NA	89826092	89825915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_89825900_89826100
PB_novel_32697_0	chr5	-	3194	1	NIC	ENSMUSG00000055204.16	novel	10458	34	NA	NA	-10782	5435	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATGCAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	90398329	90395135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_90395100_90398300
PB_novel_32699_0	chr5	-	5042	1	FSM	ENSMUSG00000055204.16	ENSMUST00000199965.2	2178	1	-2869	5	-2869	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGGCCACAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	90429250	90424208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_90424200_90429200
PB_novel_32700_3	chr5	+	5069	3	Antisense	novelGene_ENSMUSG00000055204.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACCCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90453641	90460177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_90454654_90454854_90455885_90457150
PB_novel_32700_5	chr5	+	6335	2	Antisense	novelGene_ENSMUSG00000055204.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACCCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90453641	90460177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_90454654_90454854
PB_novel_32701_0	chr5	-	176	1	Intergenic	novelGene_6545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	9324	False	NA	NA	False	NA	NA	NA	90454857	90454681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_90454700_90454900
PB_novel_32708_0	chr5	+	179	1	Intergenic	novelGene_6546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	92060811	92060990	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_92060800_92061000
PB_novel_32711_0	chr5	-	2951	1	FSM	ENSMUSG00000029397.16	ENSMUST00000200905.2	1046	1	-10	-1895	-1	1895	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	1667	False	NA	NA	False	NA	NA	NA	92110595	92107644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_92107600_92110600
PB_novel_32712_0	chr5	+	171	1	Intergenic	novelGene_6547	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGGAA	2883	False	NA	NA	False	NA	NA	NA	92140840	92141011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_92140800_92141000
PB_novel_32718_0	chr5	-	172	1	Intergenic	novelGene_6548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	92197036	92196864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_92196900_92197000
PB_novel_32724_0	chr5	-	177	1	Intergenic	novelGene_6549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	92236332	92236155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_92236200_92236300
PB_novel_32727_0	chr5	-	176	1	Intergenic	novelGene_6550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATCCTA	9805	False	NA	NA	False	NA	NA	NA	92252990	92252814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_92252800_92253000
PB_novel_32729_0	chr5	-	171	1	Intergenic	novelGene_6551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAACAAAAACTGT	8404	False	NA	NA	False	NA	NA	NA	92255260	92255089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_92255100_92255300
PB_novel_32738_0	chr5	-	181	1	Intergenic	novelGene_6552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92328981	92328800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_92328800_92329000
PB_novel_32741_0	chr5	+	176	1	Intergenic	novelGene_6553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATAAGT	NA	False	NA	NA	False	NA	NA	NA	92364080	92364256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_92364100_92364300
PB_novel_32743_0	chr5	-	176	1	Intergenic	novelGene_6554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	92388488	92388312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_92388300_92388500
PB_novel_32745_0	chr5	-	204	1	Intergenic	novelGene_6555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92446457	92446253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_92446300_92446500
PB_novel_32750_3	chr5	-	181	1	Intergenic	novelGene_6556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1394	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCTTTTAAAAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	92528181	92528000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_92528000_92528200
PB_novel_32753_0	chr5	+	1327	1	FSM	ENSMUSG00002076272.1	ENSMUST00020183735.1	144	1	-1184	1	-1184	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	4906	False	NA	NA	False	NA	NA	NA	92576459	92577786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_92576500_92577800
PB_novel_32754_0	chr5	-	3134	1	NIC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	3	-1079	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92582979	92579845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_92579800_92583000
PB_novel_32762_0	chr5	+	174	1	Intergenic	novelGene_6557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAGGTTTAAAAATGG	5926	False	NA	NA	False	NA	NA	NA	92815330	92815504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_92815300_92815500
PB_novel_32766_1	chr5	-	175	1	Intergenic	novelGene_6558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAATTCCAGTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	92905927	92905752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_92905800_92905900
PB_novel_32771_0	chr5	-	173	1	Intergenic	novelGene_6559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	955	False	NA	NA	False	NA	NA	NA	92963823	92963650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_92963600_92963800
PB_novel_32777_0	chr5	-	177	1	Intergenic	novelGene_6560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAAGTAAG	NA	False	NA	NA	False	NA	NA	NA	93116831	93116654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_93116700_93116800
PB_novel_32779_0	chr5	-	151	1	Intergenic	novelGene_6561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	93138952	93138801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_93138800_93139000
PB_novel_32784_0	chr5	-	179	1	Intergenic	novelGene_6562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAAGAACTTAAA	NA	False	NA	NA	False	NA	NA	NA	93229128	93228949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_93228900_93229100
PB_novel_32785_0	chr5	+	2559	1	FSM	ENSMUSG00000058013.12	ENSMUST00000201377.2	640	1	1	-1920	1	1920	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93241297	93243856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_93241300_93243900
PB_novel_32792_0	chr5	+	168	1	Intergenic	novelGene_6563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAGCAC	NA	False	NA	NA	False	AGTAAA	-36	NA	93346132	93346300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_93346100_93346300
PB_novel_32793_0	chr5	+	177	1	Intergenic	novelGene_6564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	93369205	93369382	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_93369200_93369400
PB_novel_32796_0	chr5	+	157	1	Intergenic	novelGene_6565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATCTTAAAAAA	4507	False	NA	NA	False	NA	NA	NA	95979341	95979498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_95979300_95979500
PB_novel_32797_0	chr5	+	624	1	FSM	ENSMUSG00000107092.2	ENSMUST00000200970.2	1384	1	1085	-325	1085	325	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAACTGGGAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-9	NA	96123183	96123807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_96123200_96123800
PB_novel_32799_0	chr5	+	1730	1	Intergenic	novelGene_6566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-41	NA	96231514	96233244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_96231500_96233200
PB_novel_32803_0	chr5	-	2162	1	Antisense	novelGene_ENSMUSG00000029486.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96377333	96375171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_96375200_96377300
PB_novel_32804_0	chr5	-	177	1	Intergenic	novelGene_6567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTGAAAAAAAAACTTA	NA	False	NA	NA	False	NA	NA	NA	96394988	96394811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_96394800_96395000
PB_novel_32807_1	chr5	-	173	1	Intergenic	novelGene_6568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	96959669	96959496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_96959500_96959700
PB_novel_32822_0	chr5	+	160	1	Intergenic	novelGene_6569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	97953970	97954130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_97954000_97954100
PB_novel_32828_1	chr5	-	172	1	Intergenic	novelGene_6570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98457104	98456932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_98456900_98457100
PB_novel_32834_0	chr5	-	174	1	Intergenic	novelGene_6571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAACTATACATAGAAA	NA	False	NA	NA	False	NA	NA	NA	99865530	99865356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_99865400_99865500
PB_novel_32837_0	chr5	+	156	1	Intergenic	novelGene_6572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATAAATAAATAATAATAA	NA	False	NA	NA	False	NA	NA	NA	99956945	99957101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_99956900_99957100
PB_novel_32841_0	chr5	+	182	1	Intergenic	novelGene_6573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100094947	100095129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_100094900_100095100
PB_novel_32845_0	chr5	-	176	1	Intergenic	novelGene_6574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100170774	100170598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_100170600_100170800
PB_novel_32848_0	chr5	+	172	1	Intergenic	novelGene_6575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100224962	100225134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_100225000_100225100
PB_novel_32851_0	chr5	-	177	1	Intergenic	novelGene_6576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100431958	100431781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_100431800_100432000
PB_novel_32853_1	chr5	+	5485	1	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAGGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-12	NA	100509757	100515242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_100509800_100515200
PB_novel_32854_1	chr5	+	2941	9	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAGAAAAAAAAAAAAAAAAG	3029	False	NA	NA	False	NA	NA	NA	100521472	100538228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_100521575_100523066_100523190_100526685_100526863_100529020_100529192_100530619_100530769_100531657_100531783_100532982_100533164_100533988_100534063_100536389
PB_novel_32866_0	chr5	+	180	1	Intergenic	novelGene_6577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATATTCACATACAT	NA	False	NA	NA	False	NA	NA	NA	100702668	100702848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_100702700_100702800
PB_novel_32867_0	chr5	+	199	1	Intergenic	novelGene_6578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACAAACAT	NA	False	NA	NA	False	NA	NA	NA	100733390	100733589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_100733400_100733600
PB_novel_32871_0	chr5	-	3541	1	NIC	ENSMUSG00000035266.17	novel	3689	18	NA	NA	3624	-2382	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100936968	100933427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_100933400_100937000
PB_novel_32872_0	chr5	-	163	1	Intergenic	novelGene_6579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	100938633	100938470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_100938500_100938600
PB_novel_32875_0	chr5	+	180	1	Intergenic	novelGene_6580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAGAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	100971913	100972093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_100971900_100972100
PB_novel_32876_0	chr5	+	177	1	Intergenic	novelGene_6581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATTAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	100985422	100985599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_100985400_100985600
PB_novel_32878_0	chr5	-	175	1	Intergenic	novelGene_6582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAATTTAAAGTAAAC	NA	False	NA	NA	False	NA	NA	NA	100997245	100997070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_100997100_100997200
PB_novel_32884_0	chr5	-	185	1	Intergenic	novelGene_6583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101304346	101304161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_101304200_101304300
PB_novel_32887_0	chr5	+	176	1	Intergenic	novelGene_6584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	101886143	101886319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_101886100_101886300
PB_novel_32896_0	chr5	-	185	1	Intergenic	novelGene_6585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	4929	False	NA	NA	False	NA	NA	NA	102013462	102013277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_102013300_102013500
PB_novel_32909_0	chr5	-	175	1	Intergenic	novelGene_6586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAACACGG	NA	False	NA	NA	False	NA	NA	NA	102729892	102729717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_102729700_102729900
PB_novel_32910_0	chr5	-	176	1	Intergenic	novelGene_6587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	251	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	102772631	102772455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_102772500_102772600
PB_novel_32915_0	chr5	+	178	1	Intergenic	novelGene_6588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATCTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103482565	103482743	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_103482600_103482700
PB_novel_32920_0	chr5	+	194	1	Intergenic	novelGene_6589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	103654735	103654929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_103654700_103654900
PB_novel_32921_0	chr5	+	181	1	Intergenic	novelGene_6590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACATAACA	NA	False	NA	NA	False	NA	NA	NA	103688207	103688388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_103688200_103688400
PB_novel_32923_1	chr5	+	150	1	Intergenic	novelGene_6591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATAAATCTTTATTTAA	NA	False	NA	NA	False	NA	NA	NA	103733926	103734076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_103733900_103734100
PB_novel_32925_2	chr5	+	181	1	Intergenic	novelGene_6592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	103836020	103836201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_103836000_103836200
PB_novel_32936_0	chr5	+	174	1	Intergenic	novelGene_6593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	103881238	103881412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_103881200_103881400
PB_novel_32943_0	chr5	-	170	1	Intergenic	novelGene_6594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGG	9352	False	NA	NA	False	NA	NA	NA	104063563	104063393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_104063400_104063600
PB_novel_32945_0	chr5	+	176	1	Intergenic	novelGene_6595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATAATATGAGT	NA	False	NA	NA	False	NA	NA	NA	104158914	104159090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_104158900_104159100
PB_novel_32946_0	chr5	+	195	1	Intergenic	novelGene_6596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACCTTC	1604	False	NA	NA	False	NA	NA	NA	104172291	104172486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_104172300_104172500
PB_novel_32948_0	chr5	-	174	1	Intergenic	novelGene_6597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTATATAATGTCATTTAA	NA	False	NA	NA	False	NA	NA	NA	104248175	104248001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_104248000_104248200
PB_novel_32949_0	chr5	-	180	1	Antisense	novelGene_ENSMUSG00000097877.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACATTTTTTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	104267183	104267003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_104267000_104267200
PB_novel_32950_0	chr5	-	176	1	Intergenic	novelGene_6598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTGAAAAAAAAAACCAATGG	NA	False	NA	NA	False	NA	NA	NA	104294499	104294323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_104294300_104294500
PB_novel_32955_0	chr5	+	179	1	Intergenic	novelGene_6599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATTGC	NA	False	NA	NA	False	NA	NA	NA	104688127	104688306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_104688100_104688300
PB_novel_32956_0	chr5	+	178	1	Intergenic	novelGene_6600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	625	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TATTTAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	104725134	104725312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_104725100_104725300
PB_novel_32957_77	chr5	+	4776	9	Intergenic	novelGene_6601	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	17.4315626092442	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAAAATAATAATA	NA	False	NA	NA	False	AATATA	-30	NA	104757314	104792944	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_104757425_104783724_104783852_104784093_104784155_104785404_104785707_104785959_104786784_104786937_104787423_104787506_104788020_104789954_104790441_104791076
PB_novel_32960_1	chr5	-	176	1	Intergenic	novelGene_6602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAAATTAACTCAAAC	NA	False	NA	NA	False	NA	NA	NA	104773706	104773530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_104773500_104773700
PB_novel_32963_0	chr5	-	176	1	Intergenic	novelGene_6603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	104809000	104808824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_104808800_104809000
PB_novel_32964_0	chr5	-	177	1	Intergenic	novelGene_6604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAATTAACTCAAACA	NA	False	NA	NA	False	NA	NA	NA	104826632	104826455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_104826500_104826600
PB_novel_32970_0	chr5	+	4128	1	Intergenic	novelGene_6605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105001314	105005442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_105001300_105005400
PB_novel_32973_0	chr5	+	176	1	Intergenic	novelGene_6606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATTTGG	NA	False	NA	NA	False	NA	NA	NA	105295229	105295405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_105295200_105295400
PB_novel_32988_0	chr5	+	178	1	Intergenic	novelGene_6607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	105900239	105900417	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_105900200_105900400
PB_novel_32991_0	chr5	+	188	1	Intergenic	novelGene_6608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105927907	105928095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_105927900_105928100
PB_novel_32992_0	chr5	+	181	1	Intergenic	novelGene_6609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106012711	106012892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_106012700_106012900
PB_novel_32999_0	chr5	-	3222	1	NIC	ENSMUSG00000049606.17	novel	2559	6	NA	NA	10476	7442	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106832413	106829191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_106829200_106832400
PB_novel_33002_0	chr5	+	175	1	Intergenic	novelGene_6610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATAAAAGGAT	NA	False	NA	NA	False	NA	NA	NA	106871667	106871842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_106871700_106871800
PB_novel_33003_0	chr5	-	177	1	Intergenic	novelGene_6611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	106944994	106944817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_106944800_106945000
PB_novel_33004_0	chr5	-	172	1	Intergenic	novelGene_6612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTTAAAAAAAATAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	106946551	106946379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_106946400_106946600
PB_novel_33005_0	chr5	+	177	1	Intergenic	novelGene_6613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAATAT	NA	False	NA	NA	False	NA	NA	NA	107043601	107043778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_107043600_107043800
PB_novel_33006_0	chr5	-	138	1	Intergenic	novelGene_6614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107091284	107091146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_107091100_107091300
PB_novel_33011_0	chr5	+	174	1	Intergenic	novelGene_6615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTCC	NA	False	NA	NA	False	NA	NA	NA	107132895	107133069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_107132900_107133100
PB_novel_33012_0	chr5	+	175	1	Intergenic	novelGene_6616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAGAACAAT	NA	False	NA	NA	False	NA	NA	NA	107166137	107166312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_107166100_107166300
PB_novel_33014_0	chr5	+	174	1	Intergenic	novelGene_6617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTTTAAAAAAAAAGGAC	NA	False	NA	2	True	NA	NA	NA	107285948	107286122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_107285900_107286100
PB_novel_33015_0	chr5	+	178	1	Intergenic	novelGene_6618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAGAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	107395012	107395190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_107395000_107395200
PB_novel_33016_0	chr5	+	178	1	Intergenic	novelGene_6619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACAAAACATTTTTTTT	3735	False	NA	NA	False	NA	NA	NA	107441684	107441862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_107441700_107441900
PB_novel_33018_0	chr5	-	171	1	Intergenic	novelGene_6620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAGATGCAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	107501413	107501242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_107501200_107501400
PB_novel_33028_0	chr5	-	176	1	Intergenic	novelGene_6621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCATCTT	8826	False	NA	NA	False	NA	NA	NA	107967395	107967219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_107967200_107967400
PB_novel_33031_1	chr5	+	174	1	Intergenic	novelGene_6622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAACTAGA	4634	False	NA	NA	False	NA	NA	NA	108005846	108006020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108005800_108006000
PB_novel_33035_0	chr5	+	177	1	Intergenic	novelGene_6623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATCACTGTGAAG	8654	False	NA	NA	False	NA	NA	NA	108009866	108010043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108009900_108010000
PB_novel_33037_0	chr5	+	300	1	Intergenic	novelGene_6624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACACCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	108015743	108016043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108015700_108016000
PB_novel_33038_0	chr5	+	170	1	Intergenic	novelGene_6627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAAGCTCACATAG	8158	False	NA	NA	False	NA	NA	NA	108096103	108096273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108096100_108096300
PB_novel_33039_0	chr5	+	170	1	Intergenic	novelGene_6625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAATTAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	108030091	108030261	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108030100_108030300
PB_novel_33040_0	chr5	-	182	1	Intergenic	novelGene_6626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108043637	108043455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_108043500_108043600
PB_novel_33043_0	chr5	-	1372	1	Antisense	novelGene_ENSMUSG00000058558.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGGAAAAAAAAAAAAA	NA	False	NA	NA	False	TATAAA	-11	NA	108054589	108053217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_108053200_108054600
PB_novel_33049_0	chr5	+	172	1	Intergenic	novelGene_6628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAACA	NA	False	NA	NA	False	NA	NA	NA	108117914	108118086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108117900_108118100
PB_novel_33056_0	chr5	-	175	1	Intergenic	novelGene_6629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAAAAATAAAAGA	NA	False	NA	NA	False	NA	NA	NA	108159112	108158937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_108158900_108159100
PB_novel_33060_0	chr5	+	197	1	Intergenic	novelGene_6630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAGATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	108195639	108195836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108195600_108195800
PB_novel_33068_0	chr5	+	157	1	Intergenic	novelGene_6631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAATTAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108239272	108239429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108239300_108239400
PB_novel_33073_0	chr5	+	172	1	Intergenic	novelGene_6632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAAAAAAGTGA	6931	False	NA	NA	False	NA	NA	NA	108276601	108276773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108276600_108276800
PB_novel_33079_0	chr5	-	208	1	Intergenic	novelGene_6633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATTAAGTATATT	NA	False	NA	NA	False	NA	NA	NA	108337404	108337196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_108337200_108337400
PB_novel_33084_0	chr5	-	169	1	Intergenic	novelGene_6634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATCTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108373748	108373579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_108373600_108373700
PB_novel_33088_2	chr5	+	158	1	Intergenic	novelGene_6635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2762	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAATAAATCTTTAA	NA	False	NA	NA	False	NA	NA	NA	108479582	108479740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108479600_108479700
PB_novel_33092_0	chr5	+	168	1	Intergenic	novelGene_6636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAACAACAAAA	NA	False	NA	NA	False	NA	NA	NA	108499932	108500100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108499900_108500100
PB_novel_33094_0	chr5	+	177	1	Intergenic	novelGene_6637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	210	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	108501838	108502015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108501800_108502000
PB_novel_33095_0	chr5	-	177	1	Intergenic	novelGene_6640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAAT	4605	False	NA	NA	False	NA	NA	NA	108656197	108656020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_108656000_108656200
PB_novel_33096_0	chr5	+	154	1	Intergenic	novelGene_6638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAAATCTTTTTAAGAA	NA	False	NA	NA	False	NA	NA	NA	108561404	108561558	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108561400_108561600
PB_novel_33100_0	chr5	+	220	1	Intergenic	novelGene_6639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTTAAAAAAAAAAAAAAAA	4249	False	NA	NA	False	AATAAA	-27	NA	108634288	108634508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_108634300_108634500
PB_novel_33101_0	chr5	-	176	1	Intergenic	novelGene_6641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTCCACCAG	3162	False	NA	NA	False	NA	NA	NA	108657640	108657464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_108657500_108657600
PB_novel_33104_0	chr5	+	2116	1	Antisense	novelGene_ENSMUSG00000062234.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108740171	108742287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_108740200_108742300
PB_novel_33127_7	chr5	-	372	3	Intergenic	novelGene_6643	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	209	junction_2	23	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109992896	109984527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_109984676_109984863_109984991_109992799
PB_novel_33128_0	chr5	+	144	1	Intergenic	novelGene_6642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	109953411	109953555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_109953400_109953600
PB_novel_33129_0	chr5	-	135	1	Intergenic	novelGene_6644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAATCTTA	NA	False	NA	NA	False	NA	NA	NA	109997428	109997293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_109997300_109997400
PB_novel_33130_2	chr5	+	4011	4	Intergenic	novelGene_6645	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	21	junction_1	2.49443825784929	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAGAATAAAAATGCA	NA	False	NA	NA	False	NA	NA	NA	110014582	110033355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_110014679_110027935_110028063_110028252_110028314_110029628
PB_novel_33142_0	chr5	+	176	1	Intergenic	novelGene_6646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAACATTTCAAAAA	NA	False	NA	NA	False	NA	NA	NA	110192276	110192452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_110192300_110192500
PB_novel_33144_0	chr5	-	169	1	Intergenic	novelGene_6647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAATAAATATTAAAA	NA	False	NA	NA	False	NA	NA	NA	110200943	110200774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_110200800_110200900
PB_novel_33154_0	chr5	-	203	1	Intergenic	novelGene_6648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAATTCAAATAG	4074	False	NA	NA	False	AATATA	-32	NA	110265781	110265578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_110265600_110265800
PB_novel_33156_0	chr5	-	178	1	Intergenic	novelGene_6649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGATAATCAGAT	NA	False	NA	NA	False	NA	NA	NA	110289369	110289191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_110289200_110289400
PB_novel_33157_0	chr5	-	177	1	Intergenic	novelGene_6651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAACTTACCTTA	NA	False	NA	NA	False	NA	NA	NA	110365321	110365144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_110365100_110365300
PB_novel_33160_0	chr5	-	156	1	Intergenic	novelGene_6650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110312994	110312838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_110312800_110313000
PB_novel_33169_0	chr5	-	760	1	NIC	ENSMUSG00000029500.17	novel	2098	6	NA	NA	10	-3503	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110417710	110416950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_110417000_110417700
PB_novel_33171_0	chr5	-	147	1	Intergenic	novelGene_6652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CGTAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	110456389	110456242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_110456200_110456400
PB_novel_33175_0	chr5	-	173	1	Intergenic	novelGene_6653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAATGAAAAG	NA	False	NA	NA	False	NA	NA	NA	110501673	110501500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_110501500_110501700
PB_novel_33180_0	chr5	-	3381	1	Intergenic	novelGene_6654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110585438	110582057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_110582100_110585400
PB_novel_33180_2	chr5	-	3317	2	Intergenic	novelGene_6655	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110585437	110582059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_110582271_110582331
PB_novel_33195_0	chr5	+	174	2	Intergenic	novelGene_6656	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAAAAAGATAAA	NA	False	NA	NA	False	NA	NA	NA	110774157	110774622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_110774214_110774504
PB_novel_33203_0	chr5	+	172	1	Intergenic	novelGene_6657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	2795	False	NA	NA	False	NA	NA	NA	110898082	110898254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_110898100_110898300
PB_novel_33204_0	chr5	+	195	1	Intergenic	novelGene_6658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	110920518	110920713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_110920500_110920700
PB_novel_33207_0	chr5	+	177	1	Intergenic	novelGene_6659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110973699	110973876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_110973700_110973900
PB_novel_33208_0	chr5	-	178	1	Intergenic	novelGene_6660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAGAAAATAAAAAAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	110985027	110984849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_110984800_110985000
PB_novel_33215_0	chr5	-	174	1	Intergenic	novelGene_6661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATAGGTAGAGGAA	NA	False	NA	NA	False	NA	NA	NA	111258441	111258267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_111258300_111258400
PB_novel_33219_0	chr5	-	198	1	Antisense	novelGene_ENSMUSG00000070576.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACCCAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-13	NA	111602983	111602785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_111602800_111603000
PB_novel_33227_0	chr5	+	172	1	Intergenic	novelGene_6662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	112303208	112303380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_112303200_112303400
PB_novel_33229_0	chr5	-	169	1	Intergenic	novelGene_6663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112434167	112433998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_112434000_112434200
PB_novel_33231_0	chr5	-	3799	1	NIC	ENSMUSG00000029346.13	novel	1110	7	NA	NA	-6	491	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112490892	112487093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_112487100_112490900
PB_novel_33262_4	chr5	+	176	1	Intergenic	novelGene_6666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	113973554	113973730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_113973600_113973700
PB_novel_33262_9	chr5	+	173	1	Intergenic	novelGene_6665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	337	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	3788	False	NA	NA	False	NA	NA	NA	113949313	113949486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_113949300_113949500
PB_novel_33264_0	chr5	+	158	1	Intergenic	novelGene_6664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	7819	False	NA	NA	False	NA	NA	NA	113836727	113836885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_113836700_113836900
PB_novel_33277_0	chr5	-	184	1	Intergenic	novelGene_6667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	114025178	114024994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_114025000_114025200
PB_novel_33278_0	chr5	-	171	1	Intergenic	novelGene_6668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAACAAAAGACATATT	NA	False	NA	NA	False	NA	NA	NA	114026023	114025852	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_114025900_114026000
PB_novel_33289_0	chr5	+	179	1	Antisense	novelGene_ENSMUSG00000042078.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAGAACTAACAT	NA	False	NA	NA	False	NA	NA	NA	114203146	114203325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_114203100_114203300
PB_novel_33292_0	chr5	-	175	1	Intergenic	novelGene_6669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	298	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATATTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114218368	114218193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_114218200_114218400
PB_novel_33308_0	chr5	+	180	1	Intergenic	novelGene_6670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAGAAA	6454	False	NA	NA	False	NA	NA	NA	114457315	114457495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_114457300_114457500
PB_novel_33314_0	chr5	-	1066	1	Intergenic	novelGene_6671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114622588	114621522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_114621500_114622600
PB_novel_33316_0	chr5	-	169	1	Intergenic	novelGene_6672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACCCAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	114625656	114625487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_114625500_114625700
PB_novel_33318_2	chr5	+	151	1	Intergenic	novelGene_6673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACATATAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	114671765	114671916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_114671800_114671900
PB_novel_33331_0	chr5	+	174	1	Intergenic	novelGene_6674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAGATTAAATAATA	NA	False	NA	NA	False	NA	NA	NA	114839993	114840167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_114840000_114840200
PB_novel_33335_0	chr5	+	180	1	Antisense	novelGene_ENSMUSG00000041890.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114879223	114879403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_114879200_114879400
PB_novel_33337_0	chr5	+	177	1	Intergenic	novelGene_6675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATGAAAAAAAAAT	3467	False	NA	NA	False	NA	NA	NA	114915358	114915535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_114915400_114915500
PB_novel_33339_0	chr5	+	192	1	Intergenic	novelGene_6676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTCTTTTAA	6104	False	NA	NA	False	NA	NA	NA	114948323	114948515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_114948300_114948500
PB_novel_33344_0	chr5	-	138	1	Intergenic	novelGene_6677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115036852	115036714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_115036700_115036900
PB_novel_33346_0	chr5	+	147	1	Intergenic	novelGene_6678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAACAAAAAAGGAAGAA	2211	False	NA	NA	False	NA	NA	NA	115055675	115055822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115055700_115055800
PB_novel_33351_0	chr5	+	140	1	Intergenic	novelGene_6679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATATATATAT	NA	False	NA	NA	False	NA	NA	NA	115077724	115077864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115077700_115077900
PB_novel_33361_0	chr5	-	2268	1	FSM	ENSMUSG00000086167.4	ENSMUST00000148801.2	372	1	-1892	-4	-1892	4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAACAAAAA	514	False	NA	NA	False	NA	NA	NA	115193791	115191523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_-_115191500_115193800
PB_novel_33363_0	chr5	+	174	1	Intergenic	novelGene_6680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	115220968	115221142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115221000_115221100
PB_novel_33364_2	chr5	+	177	1	Intergenic	novelGene_6681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	6291	False	NA	NA	False	NA	NA	NA	115244336	115244513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115244300_115244500
PB_novel_33366_0	chr5	-	168	1	Antisense	novelGene_ENSMUSG00000029550.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAGACATAAAATA	NA	False	NA	NA	False	NA	NA	NA	115233024	115232856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_115232900_115233000
PB_novel_33371_0	chr5	+	177	1	Intergenic	novelGene_6682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	115257935	115258112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115257900_115258100
PB_novel_33372_0	chr5	-	179	1	Intergenic	novelGene_6683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAACAAAAAAAGAAAG	5418	False	NA	NA	False	NA	NA	NA	115267475	115267296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_115267300_115267500
PB_novel_33376_0	chr5	-	177	1	Intergenic	novelGene_6684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	352	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115287376	115287199	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_115287200_115287400
PB_novel_33380_0	chr5	-	162	1	Intergenic	novelGene_6685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAAAGAAA	1872	False	NA	NA	False	NA	NA	NA	115311894	115311732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_115311700_115311900
PB_novel_33389_0	chr5	-	180	1	Intergenic	novelGene_6686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	115406193	115406013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_115406000_115406200
PB_novel_33394_0	chr5	-	173	1	Intergenic	novelGene_6687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	6186	False	NA	NA	False	NA	NA	NA	115458427	115458254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_115458300_115458400
PB_novel_33395_0	chr5	+	176	1	Intergenic	novelGene_6688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATTTTAAAAAA	5189	False	NA	NA	False	NA	NA	NA	115460538	115460714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115460500_115460700
PB_novel_33398_3	chr5	+	2464	2	Antisense	novelGene_ENSMUSG00000029536.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGCAAAAAAAAAAAAA	415	False	NA	NA	False	NA	NA	NA	115472466	115474960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_115474428_115474457
PB_novel_33399_0	chr5	+	889	1	Intergenic	novelGene_6689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATTTTTTTTAAAAAA	755	False	NA	NA	False	NA	NA	NA	115475432	115476321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115475400_115476300
PB_novel_33403_0	chr5	-	178	1	Intergenic	novelGene_6690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	115500876	115500698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_115500700_115500900
PB_novel_33404_0	chr5	+	180	1	Intergenic	novelGene_6691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATCTCCAAAACA	2062	False	NA	NA	False	NA	NA	NA	115502733	115502913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115502700_115502900
PB_novel_33406_0	chr5	-	175	1	Intergenic	novelGene_6692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGTT	3970	False	NA	NA	False	NA	NA	NA	115516673	115516498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_115516500_115516700
PB_novel_33407_1	chr5	-	182	1	Intergenic	novelGene_6693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAACAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	115551940	115551758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_115551800_115551900
PB_novel_33410_0	chr5	+	183	1	Intergenic	novelGene_6694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAGTCTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115601525	115601708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115601500_115601700
PB_novel_33419_0	chr5	+	178	1	Intergenic	novelGene_6695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	273	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	7302	False	NA	NA	False	NA	NA	NA	115639347	115639525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115639300_115639500
PB_novel_33427_0	chr5	-	179	1	Intergenic	novelGene_6696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115768404	115768225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_115768200_115768400
PB_novel_33428_0	chr5	+	158	1	Intergenic	novelGene_6697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAATAAATCTTAAA	NA	False	NA	NA	False	NA	NA	NA	115791460	115791618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115791500_115791600
PB_novel_33431_0	chr5	+	183	1	Intergenic	novelGene_6698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATCGAGTTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115802507	115802690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_115802500_115802700
PB_novel_33436_0	chr5	-	172	1	Intergenic	novelGene_6699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	115904553	115904381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_115904400_115904600
PB_novel_33445_0	chr5	-	1402	1	Antisense	novelGene_ENSMUSG00000029516.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	689	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-36	NA	116146293	116144891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_116144900_116146300
PB_novel_33447_0	chr5	-	348	1	Intergenic	novelGene_6700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CGAAAAACAGAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	116180959	116180611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_116180600_116181000
PB_novel_33453_0	chr5	-	151	1	Intergenic	novelGene_6701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116425220	116425069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_116425100_116425200
PB_novel_33472_0	chr5	-	176	1	Intergenic	novelGene_6702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACCAAAACAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	117211551	117211375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_117211400_117211600
PB_novel_33476_4	chr5	-	2557	2	Antisense	novelGene_ENSMUSG00000061288.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGTAAAAAAAAAAAAA	94	False	NA	NA	False	NA	NA	NA	117287512	117284823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_117287058_117287189
PB_novel_33484_0	chr5	-	171	1	Intergenic	novelGene_6703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117471662	117471491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_117471500_117471700
PB_novel_33490_0	chr5	-	170	1	Intergenic	novelGene_6704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	117641644	117641474	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_117641500_117641600
PB_novel_33491_0	chr5	-	177	1	Intergenic	novelGene_6705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	117652102	117651925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_117651900_117652100
PB_novel_33493_0	chr5	-	134	1	Intergenic	novelGene_6706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	118021755	118021621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_118021600_118021800
PB_novel_33494_0	chr5	+	177	1	Intergenic	novelGene_6707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATTTTAC	7077	False	NA	NA	False	NA	NA	NA	118059686	118059863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_118059700_118059900
PB_novel_33507_0	chr5	+	160	1	Intergenic	novelGene_6708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAATAAAATAAA	6673	False	NA	NA	False	NA	NA	NA	118388325	118388485	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_118388300_118388500
PB_novel_33508_0	chr5	+	178	1	Intergenic	novelGene_6709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATTAATTAATTAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	118392650	118392828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_118392600_118392800
PB_novel_33509_0	chr5	+	178	1	Intergenic	novelGene_6711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	389	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	118581114	118581292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_118581100_118581300
PB_novel_33513_0	chr5	+	190	1	Intergenic	novelGene_6710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	118520201	118520391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_118520200_118520400
PB_novel_33519_0	chr5	-	157	1	Intergenic	novelGene_6712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	118628351	118628194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_118628200_118628400
PB_novel_33527_0	chr5	+	168	1	Intergenic	novelGene_6713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAACAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	118908592	118908760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_118908600_118908800
PB_novel_33528_0	chr5	-	177	1	Intergenic	novelGene_6714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	118970412	118970235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_118970200_118970400
PB_novel_33539_0	chr5	+	172	1	Intergenic	novelGene_6715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	119723572	119723744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_119723600_119723700
PB_novel_33553_0	chr5	+	176	1	Intergenic	novelGene_6716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATATCTATATAAATTA	NA	False	NA	NA	False	NA	NA	NA	120253550	120253726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_120253600_120253700
PB_novel_33557_0	chr5	-	296	1	Intergenic	novelGene_6717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAAAGAGCACAC	NA	False	NA	NA	False	NA	NA	NA	120352278	120351982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_120352000_120352300
PB_novel_33558_0	chr5	-	182	1	Intergenic	novelGene_6718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	120354260	120354078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_120354100_120354300
PB_novel_33559_0	chr5	-	202	1	Intergenic	novelGene_6719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120379375	120379173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_120379200_120379400
PB_novel_33565_2	chr5	+	1713	3	Antisense	novelGene_ENSMUSG00000029598.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATCAAAAAAAAAAAAA	3889	False	NA	NA	False	NA	NA	NA	120625497	120628022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_120625566_120625735_120625831_120626472
PB_novel_33572_0	chr5	+	141	1	Intergenic	novelGene_6720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CCAAAAAAAAAAAAAAACAA	2034	False	NA	NA	False	NA	NA	NA	120713815	120713956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_120713800_120714000
PB_novel_33574_0	chr5	-	176	1	Intergenic	novelGene_6721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGCAATCAAATAAT	387	False	NA	NA	False	NA	NA	NA	120777259	120777083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_120777100_120777300
PB_novel_33580_0	chr5	-	161	1	Intergenic	novelGene_6722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAACAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120988504	120988343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_120988300_120988500
PB_novel_33588_0	chr5	-	175	1	Intergenic	novelGene_6723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTCT	NA	False	NA	NA	False	NA	NA	NA	121275906	121275731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121275700_121275900
PB_novel_33595_0	chr5	+	161	1	Intergenic	novelGene_6724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAACAAATAAA	1254	False	NA	NA	False	NA	NA	NA	121355220	121355381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_121355200_121355400
PB_novel_33597_0	chr5	-	177	1	Intergenic	novelGene_6725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	121362259	121362082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121362100_121362300
PB_novel_33602_0	chr5	-	190	1	Intergenic	novelGene_6726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAAATAAATTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	121416477	121416287	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121416300_121416500
PB_novel_33603_0	chr5	-	177	1	Intergenic	novelGene_6727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATGCACTTA	NA	False	NA	NA	False	NA	NA	NA	121426579	121426402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121426400_121426600
PB_novel_33607_1	chr5	+	156	1	Intergenic	novelGene_6728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAATAAATAAATCTAAA	1710	False	NA	NA	False	NA	NA	NA	121485500	121485656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_121485500_121485700
PB_novel_33608_0	chr5	-	175	1	Intergenic	novelGene_6729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAATAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	121488935	121488760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121488800_121488900
PB_novel_33610_0	chr5	+	178	1	Intergenic	novelGene_6730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	8085	False	NA	NA	False	NA	NA	NA	121514995	121515173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_121515000_121515200
PB_novel_33613_0	chr5	-	1031	1	Intergenic	novelGene_6731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCCAAAAAAAAAAAAAAAA	7543	False	NA	NA	False	NA	NA	NA	121538187	121537156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121537200_121538200
PB_novel_33618_0	chr5	+	202	1	Intergenic	novelGene_6732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	121595050	121595252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_121595000_121595300
PB_novel_33620_0	chr5	-	176	1	Intergenic	novelGene_6733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	121603136	121602960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121603000_121603100
PB_novel_33625_0	chr5	+	172	1	Intergenic	novelGene_6734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAACAATAAAAAAAGAAC	4750	False	NA	NA	False	NA	NA	NA	121665636	121665808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_121665600_121665800
PB_novel_33626_0	chr5	-	2102	1	NIC	ENSMUSG00000029454.16	novel	2234	14	NA	NA	208	-9189	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121683760	121681658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_121681700_121683800
PB_novel_33630_0	chr5	-	176	1	Intergenic	novelGene_6735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	121727659	121727483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121727500_121727700
PB_novel_33635_0	chr5	+	1900	1	Intergenic	novelGene_6736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGTCTCGAAAAAACCAAAA	4047	False	NA	NA	False	NA	NA	NA	121757104	121759004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_121757100_121759000
PB_novel_33636_0	chr5	+	179	1	Intergenic	novelGene_6737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	8909	False	NA	NA	False	NA	NA	NA	121761966	121762145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_121762000_121762100
PB_novel_33638_0	chr5	-	175	1	Intergenic	novelGene_6738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121776080	121775905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121775900_121776100
PB_novel_33640_0	chr5	-	177	1	Intergenic	novelGene_6739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAGAAAATAAATAAATAA	7976	False	NA	NA	False	NA	NA	NA	121840875	121840698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121840700_121840900
PB_novel_33644_0	chr5	+	169	1	Intergenic	novelGene_6740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAGAAT	3849	False	NA	NA	False	NA	NA	NA	121852878	121853047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_121852900_121853000
PB_novel_33646_1	chr5	-	168	1	Intergenic	novelGene_6742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTTAAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	121876707	121876539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121876500_121876700
PB_novel_33647_0	chr5	-	135	1	Intergenic	novelGene_6741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAAGTAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	121874001	121873866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_121873900_121874000
PB_novel_33651_0	chr5	+	2506	1	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	885	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAACTAAAAAAAA	NA	False	NA	-49	True	NA	NA	NA	121950454	121952960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_121950500_121953000
PB_novel_33661_0	chr5	+	135	1	Intergenic	novelGene_6743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACCAACCAAACA	NA	False	NA	NA	False	NA	NA	NA	122254613	122254748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_122254600_122254700
PB_novel_33663_0	chr5	+	173	1	Intergenic	novelGene_6744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAACAAAACAA	5622	False	NA	NA	False	NA	NA	NA	122290006	122290179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_122290000_122290200
PB_novel_33667_0	chr5	+	176	1	Intergenic	novelGene_6745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTGCATACAAAAAAAAAAA	6897	False	NA	NA	False	NA	NA	NA	122316059	122316235	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_122316100_122316200
PB_novel_33669_0	chr5	-	181	1	Intergenic	novelGene_6746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	122329158	122328977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_122329000_122329200
PB_novel_33674_0	chr5	-	175	1	Intergenic	novelGene_6747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACCACTGAAAACTAAA	NA	False	NA	NA	False	NA	NA	NA	122404289	122404114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_122404100_122404300
PB_novel_33677_0	chr5	+	172	1	Intergenic	novelGene_6748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	122421004	122421176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_122421000_122421200
PB_novel_33679_1	chr5	-	177	1	Intergenic	novelGene_6749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	122437529	122437352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_122437400_122437500
PB_novel_33697_0	chr5	+	171	1	Intergenic	novelGene_6750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTTTAAAAAAGGAGGAA	NA	False	NA	NA	False	NA	NA	NA	122797236	122797407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_122797200_122797400
PB_novel_33700_0	chr5	-	175	1	Intergenic	novelGene_6751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	122861321	122861146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_122861100_122861300
PB_novel_33705_0	chr5	+	169	1	Intergenic	novelGene_6752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTTTTAAAAAAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	122910163	122910332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_122910200_122910300
PB_novel_33712_0	chr5	-	161	1	Intergenic	novelGene_6753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAATATTTTAAAAA	9759	False	NA	NA	False	NA	NA	NA	122978935	122978774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_122978800_122978900
PB_novel_33719_0	chr5	+	1561	1	Intergenic	novelGene_6754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	7464	False	NA	NA	False	NA	NA	NA	123002564	123004125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123002600_123004100
PB_novel_33720_0	chr5	+	166	1	Intergenic	novelGene_6755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATTTAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	123010937	123011103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123010900_123011100
PB_novel_33724_0	chr5	+	846	1	Intergenic	novelGene_6756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACCAAAAAAAAAAAAAAAA	99	False	NA	NA	False	NA	NA	NA	123036325	123037171	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123036300_123037200
PB_novel_33731_1	chr5	+	178	1	Intergenic	novelGene_6757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACAATAAATGGA	595	False	NA	NA	False	NA	NA	NA	123142853	123143031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123142900_123143000
PB_novel_33732_0	chr5	-	1374	1	Intergenic	novelGene_6758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAGAAAAAAAAAAAAAAA	7943	False	NA	NA	False	NA	NA	NA	123170323	123168949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_123168900_123170300
PB_novel_33740_0	chr5	-	175	1	Intergenic	novelGene_6759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123199581	123199406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_123199400_123199600
PB_novel_33744_0	chr5	+	2909	1	Intergenic	novelGene_6760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACCGGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123217380	123220289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123217400_123220300
PB_novel_33745_0	chr5	-	176	1	Intergenic	novelGene_6761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAGAAGAAGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	123226459	123226283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_123226300_123226500
PB_novel_33749_0	chr5	-	126	1	Antisense	novelGene_ENSMUSG00000038384.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGACGG	7173	False	NA	NA	False	AATAAA	-18	NA	123303181	123303055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_123303100_123303200
PB_novel_33751_0	chr5	+	181	1	Intergenic	novelGene_6762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTACG	7618	False	NA	NA	False	NA	NA	NA	123352549	123352730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123352500_123352700
PB_novel_33754_0	chr5	-	185	1	Intergenic	novelGene_6763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGGATTTGAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	123431439	123431254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_123431300_123431400
PB_novel_33755_0	chr5	-	175	1	Intergenic	novelGene_6764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	123449980	123449805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_123449800_123450000
PB_novel_33758_0	chr5	-	1814	1	Antisense	novelGene_ENSMUSG00000029438.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATGCAAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	123497467	123495653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_123495700_123497500
PB_novel_33759_0	chr5	-	4823	3	Antisense	novelGene_ENSMUSG00000065191.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATGCAAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	123510013	123495653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_123499420_123507393_123507516_123509078
PB_novel_33763_0	chr5	+	166	1	Intergenic	novelGene_6765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATACATCTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123525842	123526008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123525800_123526000
PB_novel_33764_0	chr5	-	179	1	Intergenic	novelGene_6766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAACCC	NA	False	NA	NA	False	NA	NA	NA	123538849	123538670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_123538700_123538800
PB_novel_33765_0	chr5	-	175	1	Intergenic	novelGene_6767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAATATTT	NA	False	NA	NA	False	NA	NA	NA	123551134	123550959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_123551000_123551100
PB_novel_33766_1	chr5	-	178	1	Intergenic	novelGene_6768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAACACT	NA	False	NA	NA	False	NA	NA	NA	123560771	123560593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_123560600_123560800
PB_novel_33769_0	chr5	+	178	1	Intergenic	novelGene_6769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	123623882	123624060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123623900_123624100
PB_novel_33772_1	chr5	+	177	1	Intergenic	novelGene_6773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	162	False	NA	NA	False	NA	NA	NA	123809803	123809980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123809800_123810000
PB_novel_33775_0	chr5	+	179	1	Intergenic	novelGene_6770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGTCCACAC	NA	False	NA	NA	False	NA	NA	NA	123749401	123749580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123749400_123749600
PB_novel_33776_0	chr5	-	176	1	Intergenic	novelGene_6771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAATTTATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123759435	123759259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_123759300_123759400
PB_novel_33777_0	chr5	+	180	1	Intergenic	novelGene_6772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAGAAAACTCAGAGA	NA	False	NA	NA	False	NA	NA	NA	123769771	123769951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123769800_123770000
PB_novel_33780_0	chr5	+	174	1	Intergenic	novelGene_6774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6167	False	NA	NA	False	NA	NA	NA	123815808	123815982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123815800_123816000
PB_novel_33781_0	chr5	+	165	1	Intergenic	novelGene_6775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAGCATA	NA	False	NA	NA	False	NA	NA	NA	123827326	123827491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_123827300_123827500
PB_novel_33783_0	chr5	-	169	1	Intergenic	novelGene_6776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAG	4121	False	NA	NA	False	NA	NA	NA	123861383	123861214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_123861200_123861400
PB_novel_33787_0	chr5	-	5613	1	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	1	-204	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGCCTAAAAAAAAAAAAAAA	4350	False	NA	NA	False	TTTAAA	-12	NA	123887448	123881835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_123881800_123887400
PB_novel_33796_1	chr5	+	172	1	Intergenic	novelGene_6777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	642	False	NA	NA	False	NA	NA	NA	124033200	124033372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_124033200_124033400
PB_novel_33798_0	chr5	-	182	1	Intergenic	novelGene_6778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATTAT	NA	False	NA	NA	False	NA	NA	NA	124055803	124055621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_124055600_124055800
PB_novel_33809_0	chr5	+	172	1	Intergenic	novelGene_6779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	124418853	124419025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_124418900_124419000
PB_novel_33813_0	chr5	+	177	1	Intergenic	novelGene_6780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGACAAAAT	2306	False	NA	NA	False	NA	NA	NA	124485878	124486055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_124485900_124486100
PB_novel_33816_0	chr5	-	174	1	Intergenic	novelGene_6781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	124514025	124513851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_124513900_124514000
PB_novel_33817_0	chr5	-	173	1	Intergenic	novelGene_6784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	259	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAAGAAAGAAAAC	5527	False	NA	NA	False	NA	NA	NA	124573562	124573389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_124573400_124573600
PB_novel_33821_0	chr5	+	175	1	Intergenic	novelGene_6782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATATGG	8927	False	NA	NA	False	NA	NA	NA	124539641	124539816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_124539600_124539800
PB_novel_33822_0	chr5	+	186	1	Intergenic	novelGene_6783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATTAAATTAAAAAA	6556	False	NA	NA	False	NA	NA	NA	124547861	124548047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_124547900_124548000
PB_novel_33839_0	chr5	-	184	1	Intergenic	novelGene_6785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124638565	124638381	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_124638400_124638600
PB_novel_33845_0	chr5	-	1805	1	Intergenic	novelGene_6786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124726490	124724685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_124724700_124726500
PB_novel_33847_0	chr5	+	176	1	Intergenic	novelGene_6787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	124747543	124747719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_124747500_124747700
PB_novel_33848_0	chr5	-	213	1	Intergenic	novelGene_6788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAATAATTAAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	124749010	124748797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_124748800_124749000
PB_novel_33851_0	chr5	-	176	1	Intergenic	novelGene_6789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAATAATAATAA	NA	False	NA	NA	False	NA	NA	NA	124773142	124772966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_124773000_124773100
PB_novel_33855_0	chr5	-	177	1	Intergenic	novelGene_6790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAGAAAAATAAAGA	9028	False	NA	NA	False	NA	NA	NA	124853465	124853288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_124853300_124853500
PB_novel_33857_0	chr5	+	158	1	Intergenic	novelGene_6791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAACACA	NA	False	NA	NA	False	NA	NA	NA	124994157	124994315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_124994200_124994300
PB_novel_33864_0	chr5	-	173	1	Intergenic	novelGene_6792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	8773	False	NA	NA	False	NA	NA	NA	125291762	125291589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_125291600_125291800
PB_novel_33865_1	chr5	-	195	2	Intergenic	novelGene_6793	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAAATGGCCA	NA	False	NA	NA	False	NA	NA	NA	125357952	125295721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_125295771_125357806
PB_novel_33866_0	chr5	-	177	1	Intergenic	novelGene_6794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8565	False	NA	NA	False	NA	NA	NA	125295915	125295738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_125295700_125295900
PB_novel_33868_0	chr5	+	180	1	Intergenic	novelGene_6795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATAAACATACA	NA	False	NA	NA	False	NA	NA	NA	125332963	125333143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_125333000_125333100
PB_novel_33873_0	chr5	+	171	1	Intergenic	novelGene_6796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGATTAAAA	NA	False	NA	NA	False	NA	NA	NA	125438571	125438742	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_125438600_125438700
PB_novel_33878_0	chr5	+	175	1	Intergenic	novelGene_6797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTTAAAAAAAAAGAAT	2418	False	NA	NA	False	NA	NA	NA	125444535	125444710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_125444500_125444700
PB_novel_33882_0	chr5	-	130	1	Intergenic	novelGene_6798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125468142	125468012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_125468000_125468100
PB_novel_33885_0	chr5	-	1623	1	Antisense	novelGene_ENSMUSG00000037905.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAACAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	125536905	125535282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_125535300_125536900
PB_novel_33890_0	chr5	-	177	1	Intergenic	novelGene_6799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125561425	125561248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_125561200_125561400
PB_novel_33895_0	chr5	-	171	1	Intergenic	novelGene_6800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAACAAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	125655239	125655068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_125655100_125655200
PB_novel_33908_0	chr5	+	1397	1	Antisense	novelGene_ENSMUSG00000029416.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127691169	127692566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_127691200_127692600
PB_novel_33911_0	chr5	-	165	1	Intergenic	novelGene_6801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATTTTAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	127721131	127720966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_127721000_127721100
PB_novel_33914_0	chr5	-	2234	1	Intergenic	novelGene_6802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-34	NA	127736795	127734561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_127734600_127736800
PB_novel_33919_1	chr5	+	208	1	Intergenic	novelGene_6803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	128032219	128032427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_128032200_128032400
PB_novel_33920_0	chr5	+	175	1	Intergenic	novelGene_6804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128173290	128173465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_128173300_128173500
PB_novel_33927_0	chr5	-	172	1	Intergenic	novelGene_6805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAAAGATAGAGGG	NA	False	NA	NA	False	NA	NA	NA	128418154	128417982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_128418000_128418200
PB_novel_33929_0	chr5	+	176	1	Intergenic	novelGene_6806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAGAAAGAAAGA	7123	False	NA	NA	False	NA	NA	NA	128577866	128578042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_128577900_128578000
PB_novel_33933_0	chr5	+	179	1	Intergenic	novelGene_6807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	128665147	128665326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_128665100_128665300
PB_novel_33946_0	chr5	-	179	1	Intergenic	novelGene_6808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAATAAAAAAAAGTATA	NA	False	NA	NA	False	NA	NA	NA	129226684	129226505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_129226500_129226700
PB_novel_33947_0	chr5	+	178	1	Intergenic	novelGene_6809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGCCA	NA	False	NA	NA	False	NA	NA	NA	129231893	129232071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_129231900_129232100
PB_novel_33959_0	chr5	-	169	1	Intergenic	novelGene_6810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTTAAAAAAAAATAAGTG	NA	False	NA	NA	False	NA	NA	NA	129799947	129799778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_129799800_129799900
PB_novel_33960_0	chr5	+	3259	1	FSM	ENSMUSG00000086916.3	ENSMUST00000199631.2	3518	1	-3054	3313	-1928	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	7822	False	NA	NA	False	NA	NA	NA	129802181	129805440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr5_+_129802200_129805400
PB_novel_33962_0	chr5	-	173	1	Intergenic	novelGene_6811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	129828160	129827987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_129828000_129828200
PB_novel_33963_0	chr5	-	160	1	Intergenic	novelGene_6812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	129840090	129839930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_129839900_129840100
PB_novel_33969_0	chr5	-	223	1	Intergenic	novelGene_6813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATATTAAAAAAAAAAAAAAA	6502	False	NA	NA	False	NA	NA	NA	129880959	129880736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_129880700_129881000
PB_novel_33971_0	chr5	+	175	1	Intergenic	novelGene_6814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	129890612	129890787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_129890600_129890800
PB_novel_33977_2	chr5	+	173	1	Intergenic	novelGene_6815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	298	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATAC	667	False	NA	NA	False	NA	NA	NA	129919225	129919398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_129919200_129919400
PB_novel_33979_0	chr5	-	180	1	Intergenic	novelGene_6816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	129921627	129921447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_129921400_129921600
PB_novel_33981_0	chr5	-	177	1	Intergenic	novelGene_6817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	245	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	129982009	129981832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_129981800_129982000
PB_novel_33996_0	chr5	-	177	1	Intergenic	novelGene_6818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	130090233	130090056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_130090100_130090200
PB_novel_33997_0	chr5	-	168	1	Antisense	novelGene_ENSMUSG00000034118.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTGAAAAAAAAAAGATTAA	NA	False	NA	NA	False	NA	NA	NA	130122710	130122542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_130122500_130122700
PB_novel_34001_0	chr5	-	161	1	Intergenic	novelGene_6819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	130188368	130188207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_130188200_130188400
PB_novel_34007_0	chr5	-	169	1	Intergenic	novelGene_6820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130267590	130267421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_130267400_130267600
PB_novel_34014_0	chr5	-	1913	1	Intergenic	novelGene_6821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130368182	130366269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_130366300_130368200
PB_novel_34030_0	chr5	+	4414	1	Intergenic	novelGene_6822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132471271	132475685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_132471300_132475700
PB_novel_34035_3	chr5	-	175	1	Intergenic	novelGene_6825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAACCAAAACAA	6290	False	NA	NA	False	NA	NA	NA	134337945	134337770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_134337800_134337900
PB_novel_34041_5	chr5	+	4275	3	Antisense	novelGene_ENSMUSG00000107000.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134292588	134299571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_134292623_134294590_134294657_134295396
PB_novel_34042_0	chr5	+	1388	1	Antisense	novelGene_ENSMUSG00000060261.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAAAATAGAATC	NA	False	NA	NA	False	NA	NA	NA	134277849	134279237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_134277800_134279200
PB_novel_34045_0	chr5	+	2104	1	Antisense	novelGene_ENSMUSG00000107000.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134297467	134299571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_134297500_134299600
PB_novel_34046_0	chr5	+	4885	1	Antisense	novelGene_ENSMUSG00000060261.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAGACAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134300958	134305843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_134301000_134305800
PB_novel_34048_0	chr5	-	175	1	Intergenic	novelGene_6823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134328805	134328630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_134328600_134328800
PB_novel_34050_0	chr5	+	179	1	Intergenic	novelGene_6824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	134335609	134335788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_134335600_134335800
PB_novel_34052_0	chr5	-	160	1	Intergenic	novelGene_6826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAATCTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134350072	134349912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_134349900_134350100
PB_novel_34055_0	chr5	+	176	1	Intergenic	novelGene_6827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	134356578	134356754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_134356600_134356800
PB_novel_34056_0	chr5	+	180	1	Intergenic	novelGene_6828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	134364937	134365117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_134364900_134365100
PB_novel_34060_0	chr5	-	177	1	Intergenic	novelGene_6829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGCTCA	1831	False	NA	NA	False	NA	NA	NA	134384386	134384209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_134384200_134384400
PB_novel_34061_0	chr5	-	899	1	NIC	ENSMUSG00000023079.15	novel	3461	30	NA	NA	2563	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATGAAAAAGAACA	NA	False	NA	NA	False	TTTAAA	-6	NA	134387431	134386532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_-_134386500_134387400
PB_novel_34062_0	chr5	+	193	1	Intergenic	novelGene_6830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATACATACATACATAATA	NA	False	NA	NA	False	NA	NA	NA	134407721	134407914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_134407700_134407900
PB_novel_34071_0	chr5	+	157	1	Intergenic	novelGene_6831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATATTAAAAAC	NA	False	NA	NA	False	NA	NA	NA	134566726	134566883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_134566700_134566900
PB_novel_34073_0	chr5	+	159	1	Intergenic	novelGene_6832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134610596	134610755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_134610600_134610800
PB_novel_34074_0	chr5	+	179	1	Intergenic	novelGene_6833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAGTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134645372	134645551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_134645400_134645600
PB_novel_34078_0	chr5	-	258	1	Intergenic	novelGene_6834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAATCTTAAAAAAAA	5268	False	NA	NA	False	NA	NA	NA	134683376	134683118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_134683100_134683400
PB_novel_34079_0	chr5	-	175	1	Intergenic	novelGene_6835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134691640	134691465	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_134691500_134691600
PB_novel_34080_0	chr5	+	949	1	Intergenic	novelGene_6836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAGAAAAAAAAAAAA	7847	False	NA	NA	False	NA	NA	NA	134711406	134712355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_134711400_134712400
PB_novel_34081_0	chr5	+	175	1	Intergenic	novelGene_6837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAAATT	NA	False	NA	NA	False	NA	NA	NA	134767286	134767461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_134767300_134767500
PB_novel_34093_0	chr5	-	176	1	Intergenic	novelGene_6838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	7671	False	NA	NA	False	NA	NA	NA	135045745	135045569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135045600_135045700
PB_novel_34096_0	chr5	+	169	1	Intergenic	novelGene_6839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	135060604	135060773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135060600_135060800
PB_novel_34098_0	chr5	+	172	1	Intergenic	novelGene_6840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	135076924	135077096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135076900_135077100
PB_novel_34099_0	chr5	+	176	1	Intergenic	novelGene_6841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAAACAAAACCA	754	False	NA	NA	False	NA	NA	NA	135090677	135090853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135090700_135090900
PB_novel_34100_0	chr5	+	3795	2	Genic_Genomic	ENSMUSG00000061118.9	novel	1661	1	NA	NA	42	3500	multi-exon	FALSE	canonical	1	4	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATATTAAAAA	3174	False	NA	NA	False	NA	NA	NA	135093097	135098216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_+_135094257_135095580
PB_novel_34100_2	chr5	+	3918	3	Genic_Genomic	ENSMUSG00000061118.9	novel	1661	1	NA	NA	42	3768	multi-exon	TRUE	non_canonical	0	0	junction_2	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCAATCAATCAATCAATC	3174	False	NA	NA	False	NA	NA	NA	135093097	135098484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr5_+_135094257_135095580_135097518_135097662
PB_novel_34105_0	chr5	-	183	1	Intergenic	novelGene_6842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAACTTGAT	NA	False	NA	NA	False	NA	NA	NA	135182773	135182590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135182600_135182800
PB_novel_34108_0	chr5	-	5114	1	Intergenic	novelGene_6843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	135222433	135217319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135217300_135222400
PB_novel_34109_0	chr5	-	174	1	Intergenic	novelGene_6845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	135258542	135258368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135258400_135258500
PB_novel_34111_0	chr5	-	175	1	Intergenic	novelGene_6844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	135232244	135232069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135232100_135232200
PB_novel_34118_0	chr5	+	176	1	Intergenic	novelGene_6846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAATAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	135306319	135306495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135306300_135306500
PB_novel_34119_1	chr5	-	177	1	Intergenic	novelGene_6847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	258	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAATTAACTTAAAT	NA	False	NA	NA	False	NA	NA	NA	135311352	135311175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135311200_135311400
PB_novel_34122_0	chr5	-	2639	1	Intergenic	novelGene_6848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	TTTAAA	-22	NA	135338568	135335929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135335900_135338600
PB_novel_34123_0	chr5	+	156	1	Intergenic	novelGene_6849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	135336093	135336249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135336100_135336200
PB_novel_34125_0	chr5	-	136	1	Intergenic	novelGene_6850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	485	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	7847	False	NA	NA	False	NA	NA	NA	135386681	135386545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135386500_135386700
PB_novel_34132_0	chr5	-	170	1	Intergenic	novelGene_6851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	785	False	NA	NA	False	NA	NA	NA	135434356	135434186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135434200_135434400
PB_novel_34133_1	chr5	-	176	1	Intergenic	novelGene_6852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAACTGGGAAGT	NA	False	NA	NA	False	NA	NA	NA	135440772	135440596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135440600_135440800
PB_novel_34135_0	chr5	-	175	1	Intergenic	novelGene_6853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	4986	False	NA	NA	False	NA	NA	NA	135522736	135522561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135522600_135522700
PB_novel_34137_1	chr5	+	181	1	Intergenic	novelGene_6855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	759	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5675	False	NA	NA	False	NA	NA	NA	135721663	135721844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135721700_135721800
PB_novel_34138_0	chr5	+	1781	1	NIC	ENSMUSG00000039917.11	novel	4207	4	NA	NA	-6	-1125	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	135661563	135663344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_135661600_135663300
PB_novel_34140_0	chr5	+	166	1	Intergenic	novelGene_6854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATCTTTAAAAAAAAAAA	6895	False	NA	NA	False	NA	NA	NA	135696093	135696259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135696100_135696300
PB_novel_34142_0	chr5	+	172	1	Intergenic	novelGene_6857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAATTAAAAA	3069	False	NA	NA	False	NA	NA	NA	135738035	135738207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135738000_135738200
PB_novel_34143_0	chr5	-	106	1	Intergenic	novelGene_6856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAATAAAAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	135723497	135723391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135723400_135723500
PB_novel_34145_0	chr5	+	169	1	Intergenic	novelGene_6860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	135901524	135901693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135901500_135901700
PB_novel_34147_0	chr5	-	173	1	Intergenic	novelGene_6858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	135787617	135787444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135787400_135787600
PB_novel_34149_0	chr5	+	174	1	Intergenic	novelGene_6859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACATACATACAT	3393	False	NA	NA	False	NA	NA	NA	135866441	135866615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135866400_135866600
PB_novel_34159_0	chr5	-	1370	1	Intergenic	novelGene_6861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGCCAAAAAAGAAAA	4501	False	NA	NA	False	NA	NA	NA	135930125	135928755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135928800_135930100
PB_novel_34160_1	chr5	+	168	1	Intergenic	novelGene_6867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAGATTAAAA	NA	False	NA	NA	False	NA	NA	NA	136079517	136079685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_136079500_136079700
PB_novel_34162_0	chr5	+	222	1	Intergenic	novelGene_6862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	7757	False	NA	NA	False	NA	NA	NA	135970706	135970928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135970700_135970900
PB_novel_34163_0	chr5	+	166	1	Intergenic	novelGene_6863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACCCTAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-11	NA	135976687	135976853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_135976700_135976900
PB_novel_34164_0	chr5	-	177	1	Intergenic	novelGene_6864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAACAAAACC	NA	False	NA	NA	False	NA	NA	NA	135988054	135987877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_135987900_135988100
PB_novel_34165_0	chr5	+	156	1	Intergenic	novelGene_6865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATATTAA	8941	False	NA	NA	False	NA	NA	NA	136003781	136003937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_136003800_136003900
PB_novel_34168_0	chr5	-	160	1	Intergenic	novelGene_6866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTTTAATTAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	136021588	136021428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_136021400_136021600
PB_novel_34172_0	chr5	-	177	1	Intergenic	novelGene_6868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	136104750	136104573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_136104600_136104800
PB_novel_34177_0	chr5	-	759	1	Intergenic	novelGene_6869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	136181016	136180257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_136180300_136181000
PB_novel_34187_0	chr5	+	4358	1	Intergenic	novelGene_6870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	CATAAA	-19	NA	136586547	136590905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_136586500_136590900
PB_novel_34196_0	chr5	+	174	1	Intergenic	novelGene_6871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	136787343	136787517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_136787300_136787500
PB_novel_34199_0	chr5	+	173	1	Intergenic	novelGene_6872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAATAAATAAAAA	6952	False	NA	NA	False	NA	NA	NA	136926560	136926733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_136926600_136926700
PB_novel_34204_0	chr5	-	2871	3	Intergenic	novelGene_6873	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAGAAAAAAAAAAAAAAAAA	6950	False	NA	NA	False	NA	NA	NA	136980911	136977519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_136978151_136978356_136978610_136978924
PB_novel_34207_0	chr5	+	169	1	Intergenic	novelGene_6874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATTAAAAAAAAAAAAA	1043	False	NA	NA	False	NA	NA	NA	136988705	136988874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_136988700_136988900
PB_novel_34213_0	chr5	-	172	1	Intergenic	novelGene_6875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAATTAAAA	9892	False	NA	NA	False	NA	NA	NA	137052765	137052593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_137052600_137052800
PB_novel_34215_0	chr5	+	191	1	Intergenic	novelGene_6876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	302	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	137280377	137280568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_137280400_137280600
PB_novel_34219_0	chr5	+	177	1	Intergenic	novelGene_6877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACTTATGTAATATAATA	NA	False	NA	NA	False	NA	NA	NA	137325005	137325182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_137325000_137325200
PB_novel_34223_0	chr5	-	180	1	Intergenic	novelGene_6878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATAGGA	NA	False	NA	NA	False	NA	NA	NA	137345890	137345710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_137345700_137345900
PB_novel_34225_0	chr5	+	1320	1	Antisense	novelGene_ENSMUSG00000079173.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	137399529	137400849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_137399500_137400800
PB_novel_34229_0	chr5	+	185	1	Intergenic	novelGene_6879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAAATTAGACTGTG	NA	False	NA	NA	False	NA	NA	NA	137541828	137542013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_137541800_137542000
PB_novel_34245_0	chr5	+	383	1	Intergenic	novelGene_6880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTTAAAAAAAAAAAAA	486	False	NA	NA	False	NA	NA	NA	137748210	137748593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_137748200_137748600
PB_novel_34247_0	chr5	-	181	1	Intergenic	novelGene_6881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	137769823	137769642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_137769600_137769800
PB_novel_34259_0	chr5	+	175	1	Intergenic	novelGene_6882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATGTTCCCTTAAAA	4443	False	NA	NA	False	NA	NA	NA	138108180	138108355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_138108200_138108400
PB_novel_34263_0	chr5	-	174	1	Intergenic	novelGene_6883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACCAGAAA	1016	False	NA	NA	False	NA	NA	NA	138154701	138154527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_138154500_138154700
PB_novel_34269_0	chr5	+	134	1	Intergenic	novelGene_6884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	138751628	138751762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_138751600_138751800
PB_novel_34288_0	chr5	+	170	1	Intergenic	novelGene_6885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	139296798	139296968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_139296800_139297000
PB_novel_34289_0	chr5	-	177	1	Intergenic	novelGene_6886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	139326917	139326740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_139326700_139326900
PB_novel_34290_0	chr5	+	175	1	Intergenic	novelGene_6887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACTTGG	NA	False	NA	NA	False	NA	NA	NA	139334082	139334257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_139334100_139334300
PB_novel_34293_0	chr5	+	157	2	Intergenic	novelGene_6889	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	103	junction_1	0	824	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATAATTTTTTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	139470810	139497755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_139470860_139497647
PB_novel_34294_0	chr5	+	169	1	Intergenic	novelGene_6888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	139470809	139470978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_139470800_139471000
PB_novel_34299_0	chr5	+	177	1	Intergenic	novelGene_6890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	139649273	139649450	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_139649300_139649400
PB_novel_34301_0	chr5	+	176	1	Intergenic	novelGene_6891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGTGT	NA	False	NA	NA	False	NA	NA	NA	139764822	139764998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_139764800_139765000
PB_novel_34302_0	chr5	+	176	1	Intergenic	novelGene_6892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATTTACT	NA	False	NA	NA	False	NA	NA	NA	139774038	139774214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_139774000_139774200
PB_novel_34307_0	chr5	+	187	1	Intergenic	novelGene_6893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATGAAG	NA	False	NA	NA	False	NA	NA	NA	139936557	139936744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_139936600_139936700
PB_novel_34308_0	chr5	-	303	1	Intergenic	novelGene_6894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAAAAGAACAT	NA	False	NA	NA	False	NA	NA	NA	139966591	139966288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_139966300_139966600
PB_novel_34310_0	chr5	-	178	1	Intergenic	novelGene_6895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	140106038	140105860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_140105900_140106000
PB_novel_34312_0	chr5	+	182	1	Intergenic	novelGene_6896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140159249	140159431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_140159200_140159400
PB_novel_34314_0	chr5	+	191	1	Intergenic	novelGene_6897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATACCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140251578	140251769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_140251600_140251800
PB_novel_34326_0	chr5	+	175	1	Intergenic	novelGene_6898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	182	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	140380791	140380966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_140380800_140381000
PB_novel_34329_0	chr5	+	171	1	Intergenic	novelGene_6899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140403444	140403615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_140403400_140403600
PB_novel_34332_0	chr5	+	170	1	Intergenic	novelGene_6900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140451425	140451595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_140451400_140451600
PB_novel_34333_0	chr5	-	155	1	Intergenic	novelGene_6901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAACAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	140453967	140453812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_140453800_140454000
PB_novel_34336_0	chr5	-	180	1	Intergenic	novelGene_6902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TATAAAAAAAAAAAAAAAGG	6794	False	NA	NA	False	NA	NA	NA	140558272	140558092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_140558100_140558300
PB_novel_34341_0	chr5	-	176	1	Intergenic	novelGene_6903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	140681170	140680994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_140681000_140681200
PB_novel_34343_0	chr5	-	161	1	Intergenic	novelGene_6904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTACAAAAATCTTAGAAA	NA	False	NA	NA	False	NA	NA	NA	140720490	140720329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_140720300_140720500
PB_novel_34351_0	chr5	+	170	1	Intergenic	novelGene_6905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTCTTTTTAAAAAAATTAT	NA	False	NA	NA	False	NA	NA	NA	141378385	141378555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_141378400_141378600
PB_novel_34353_0	chr5	+	173	1	Intergenic	novelGene_6906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	142283009	142283182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_142283000_142283200
PB_novel_34356_0	chr5	-	176	1	Intergenic	novelGene_6907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAGTACC	NA	False	NA	NA	False	NA	NA	NA	142438265	142438089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_142438100_142438300
PB_novel_34360_0	chr5	+	177	1	Intergenic	novelGene_6908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAATTTTTCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	142518998	142519175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_142519000_142519200
PB_novel_34361_1	chr5	-	181	1	Intergenic	novelGene_6912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	142631462	142631281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_142631300_142631500
PB_novel_34363_0	chr5	-	176	1	Intergenic	novelGene_6909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTTAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	142539969	142539793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_142539800_142540000
PB_novel_34364_0	chr5	+	180	1	Intergenic	novelGene_6910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAGAAATAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	142547413	142547593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_142547400_142547600
PB_novel_34366_0	chr5	+	190	1	Intergenic	novelGene_6911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	142579965	142580155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_142580000_142580200
PB_novel_34369_0	chr5	-	174	1	Intergenic	novelGene_6913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACATTACT	NA	False	NA	NA	False	NA	NA	NA	142713135	142712961	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_142713000_142713100
PB_novel_34375_1	chr5	+	181	1	Intergenic	novelGene_6914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGATAAGGAG	437	False	NA	NA	False	NA	NA	NA	142818499	142818680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_142818500_142818700
PB_novel_34378_0	chr5	-	176	1	Intergenic	novelGene_6915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	142876211	142876035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_142876000_142876200
PB_novel_34383_0	chr5	+	1846	1	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	142887403	142889249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_142887400_142889200
PB_novel_34386_0	chr5	+	174	1	Intergenic	novelGene_6916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGCTTA	9521	False	NA	NA	False	NA	NA	NA	142919508	142919682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_142919500_142919700
PB_novel_34387_0	chr5	+	177	1	Intergenic	novelGene_6917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAAAATTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	142920018	142920195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_142920000_142920200
PB_novel_34392_0	chr5	+	4997	1	NIC	ENSMUSG00000029581.15	novel	2675	5	NA	NA	14	-5199	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAACCAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	142946111	142951108	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_142946100_142951100
PB_novel_34405_0	chr5	-	171	1	Intergenic	novelGene_6918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATCTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	143091356	143091185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_143091200_143091400
PB_novel_34406_0	chr5	+	178	1	Intergenic	novelGene_6919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATCTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	143091865	143092043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_143091900_143092000
PB_novel_34418_0	chr5	+	176	1	Intergenic	novelGene_6920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	143399240	143399416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_143399200_143399400
PB_novel_34425_0	chr5	+	157	1	Intergenic	novelGene_6921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	143546448	143546605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_143546400_143546600
PB_novel_34426_0	chr5	-	178	1	Intergenic	novelGene_6922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	143784189	143784011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_143784000_143784200
PB_novel_34433_0	chr5	-	193	1	Intergenic	novelGene_6923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAGAACAAAAAAATTTTT	2858	False	NA	NA	False	NA	NA	NA	143906953	143906760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_143906800_143907000
PB_novel_34436_0	chr5	+	179	1	Intergenic	novelGene_6924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	143966062	143966241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_143966100_143966200
PB_novel_34443_1	chr5	-	172	2	Antisense	novelGene_ENSMUSG00000086894.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	144282018	144163607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_144163732_144281970
PB_novel_34444_0	chr5	+	173	1	Intergenic	novelGene_6925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	144169087	144169260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_144169100_144169300
PB_novel_34450_0	chr5	-	174	1	Intergenic	novelGene_6926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAATGAGTGAAGA	NA	False	NA	NA	False	NA	NA	NA	144290820	144290646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_144290600_144290800
PB_novel_34451_0	chr5	-	187	1	Intergenic	novelGene_6927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAGTATAAGTAA	NA	False	NA	NA	False	NA	NA	NA	144305338	144305151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_144305200_144305300
PB_novel_34455_0	chr5	+	174	1	Intergenic	novelGene_6928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAGAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	144327405	144327579	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_144327400_144327600
PB_novel_34469_0	chr5	+	216	1	Intergenic	novelGene_6929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	144660973	144661189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_144661000_144661200
PB_novel_34473_0	chr5	-	176	1	Intergenic	novelGene_6930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAATTAAACCGAA	NA	False	NA	NA	False	NA	NA	NA	144710623	144710447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_144710400_144710600
PB_novel_34476_0	chr5	-	190	1	Intergenic	novelGene_6931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAACACACACACAAAT	NA	False	NA	NA	False	NA	NA	NA	144931620	144931430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_144931400_144931600
PB_novel_34479_0	chr5	+	175	1	Antisense	novelGene_ENSMUSG00000029623.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAGTTAAACAGT	NA	False	NA	NA	False	NA	NA	NA	145070163	145070338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_145070200_145070300
PB_novel_34482_0	chr5	-	3029	1	Antisense	novelGene_ENSMUSG00000029625.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAACAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	145109861	145106832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_145106800_145109900
PB_novel_34486_0	chr5	+	173	1	Intergenic	novelGene_6932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	145154077	145154250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_145154100_145154200
PB_novel_34492_0	chr5	+	174	1	Intergenic	novelGene_6933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGAGAGAGA	8011	False	NA	NA	False	NA	NA	NA	145222547	145222721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_145222500_145222700
PB_novel_34495_0	chr5	+	137	1	Intergenic	novelGene_6934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAGAAAAAAA	8480	False	NA	NA	False	NA	NA	NA	146087736	146087873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_146087700_146087900
PB_novel_34499_0	chr5	+	360	1	Intergenic	novelGene_6935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCACCCTGTTCCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146197802	146198162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_146197800_146198200
PB_novel_34503_0	chr5	-	198	1	Intergenic	novelGene_6936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTCAACTCCCAA	NA	False	NA	NA	False	NA	NA	NA	146269147	146268949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_146268900_146269100
PB_novel_34509_0	chr5	+	177	1	Intergenic	novelGene_6937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	146601234	146601411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_146601200_146601400
PB_novel_34511_0	chr5	+	150	1	Intergenic	novelGene_6938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TATAATAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	146658191	146658341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_146658200_146658300
PB_novel_34519_0	chr5	-	169	1	Intergenic	novelGene_6939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	327	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146854588	146854419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_146854400_146854600
PB_novel_34521_0	chr5	-	174	1	Intergenic	novelGene_6940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	146860190	146860016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_146860000_146860200
PB_novel_34530_0	chr5	+	179	1	Intergenic	novelGene_6941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAACAAAAAATAGAAGATTA	9361	False	NA	NA	False	NA	NA	NA	147086926	147087105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_147086900_147087100
PB_novel_34531_0	chr5	-	189	1	Intergenic	novelGene_6942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	147110294	147110105	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_147110100_147110300
PB_novel_34539_0	chr5	+	171	1	Intergenic	novelGene_6943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	147233359	147233530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_147233400_147233500
PB_novel_34543_0	chr5	+	191	1	Intergenic	novelGene_6944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAAGGCTTAA	NA	False	NA	NA	False	NA	NA	NA	147334092	147334283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_147334100_147334300
PB_novel_34549_0	chr5	-	871	1	Intergenic	novelGene_6945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAACAAAACAA	NA	False	NA	NA	False	AATATA	-37	NA	147375501	147374630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_147374600_147375500
PB_novel_34550_0	chr5	-	180	1	Antisense	novelGene_ENSMUSG00000029647.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	147388746	147388566	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_147388600_147388700
PB_novel_34553_0	chr5	+	4198	1	Intergenic	novelGene_6946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	1023	False	NA	NA	False	NA	NA	NA	147440359	147444557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_147440400_147444600
PB_novel_34555_0	chr5	+	169	1	Intergenic	novelGene_6947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAAGCCT	3375	False	NA	NA	False	NA	NA	NA	147471841	147472010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_147471800_147472000
PB_novel_34567_0	chr5	+	179	1	Intergenic	novelGene_6948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	5262	False	NA	NA	False	NA	NA	NA	147878537	147878716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_147878500_147878700
PB_novel_34586_0	chr5	-	166	1	Intergenic	novelGene_6950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAAAACAAAACC	NA	False	NA	NA	False	NA	NA	NA	148807941	148807775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_148807800_148807900
PB_novel_34588_0	chr5	+	184	1	Intergenic	novelGene_6951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAAAAATCTTTGAGA	NA	False	NA	NA	False	AGTAAA	-5	NA	148922267	148922451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_148922300_148922500
PB_novel_34591_0	chr5	+	172	1	Intergenic	novelGene_6952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	148979173	148979345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_148979200_148979300
PB_novel_34603_0	chr5	+	174	1	Intergenic	novelGene_6953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAGAAATAGA	NA	False	NA	NA	False	NA	NA	NA	149156175	149156349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_149156200_149156300
PB_novel_34613_0	chr5	-	174	1	Intergenic	novelGene_6954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAAAAAATGGA	NA	False	NA	NA	False	NA	NA	NA	149467725	149467551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_149467600_149467700
PB_novel_34614_0	chr5	-	175	1	Intergenic	novelGene_6955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149551744	149551569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_149551600_149551700
PB_novel_34629_0	chr5	-	176	1	Intergenic	novelGene_6956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	6189	False	NA	NA	False	NA	NA	NA	149763315	149763139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_149763100_149763300
PB_novel_34633_0	chr5	+	141	1	Intergenic	novelGene_6957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	150057468	150057609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_150057500_150057600
PB_novel_34634_0	chr5	-	170	1	Intergenic	novelGene_6958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAAAAATGTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	150094062	150093892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_150093900_150094100
PB_novel_34650_1	chr5	-	2190	1	Antisense	novelGene_ENSMUSG00000041147.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGACAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	150474609	150472419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_150472400_150474600
PB_novel_34655_0	chr5	+	169	1	Intergenic	novelGene_6959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCTTAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	150538576	150538745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_150538600_150538700
PB_novel_34657_0	chr5	+	161	1	Intergenic	novelGene_6960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAAAACTCA	NA	False	NA	NA	False	NA	NA	NA	150548852	150549013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_150548900_150549000
PB_novel_34661_0	chr5	-	171	1	Intergenic	novelGene_6963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGTAAATAAATCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	150638540	150638369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_150638400_150638500
PB_novel_34662_0	chr5	+	175	1	Antisense	novelGene_ENSMUSG00000029655.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAAATTAT	5594	False	NA	NA	False	NA	NA	NA	150572119	150572294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_150572100_150572300
PB_novel_34665_0	chr5	-	162	1	Intergenic	novelGene_6961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATCTAAAAAAAA	7875	False	NA	NA	False	NA	NA	NA	150586639	150586477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_150586500_150586600
PB_novel_34666_0	chr5	-	172	1	Intergenic	novelGene_6962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	463	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAACAT	4526	False	NA	NA	False	NA	NA	NA	150589988	150589816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_150589800_150590000
PB_novel_34667_0	chr5	+	4539	1	NIC	ENSMUSG00000034021.16	novel	6598	35	NA	NA	60	-70188	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150597351	150601890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr5_+_150597400_150601900
PB_novel_34673_1	chr5	-	4794	3	Antisense	novelGene_ENSMUSG00000107048.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150682840	150673893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_150677935_150679846_150679896_150682136
PB_novel_34675_0	chr5	-	176	1	Intergenic	novelGene_6964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATAAATAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150719062	150718886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_150718900_150719100
PB_novel_34678_0	chr5	-	152	1	Intergenic	novelGene_6965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	151205557	151205405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_-_151205400_151205600
PB_novel_34698_0	chr6	+	188	1	Intergenic	novelGene_2841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATATTAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	3456259	3456447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_3456300_3456400
PB_novel_34704_0	chr6	-	177	1	Intergenic	novelGene_2842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAATCAAA	NA	False	NA	NA	False	NA	NA	NA	4564607	4564430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_4564400_4564600
PB_novel_34713_0	chr6	-	176	1	Intergenic	novelGene_2843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	5104813	5104637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_5104600_5104800
PB_novel_34715_0	chr6	+	165	1	Intergenic	novelGene_2844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5222988	5223153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_5223000_5223200
PB_novel_34716_0	chr6	+	139	1	Intergenic	novelGene_2845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	5231781	5231920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_5231800_5231900
PB_novel_34718_0	chr6	-	202	1	Intergenic	novelGene_2846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATTAAAAAAAAAG	3936	False	NA	NA	False	NA	NA	NA	5321345	5321143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_5321100_5321300
PB_novel_34724_0	chr6	-	173	1	Intergenic	novelGene_2847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	5556627	5556454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_5556500_5556600
PB_novel_34728_0	chr6	+	162	1	Intergenic	novelGene_2848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAACAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	5841131	5841293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_5841100_5841300
PB_novel_34730_0	chr6	+	3573	1	Intergenic	novelGene_2849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACCCAAAAACCAAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	6079337	6082910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_6079300_6082900
PB_novel_34732_0	chr6	-	3281	1	Intergenic	novelGene_2850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6108332	6105051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_6105100_6108300
PB_novel_34734_0	chr6	-	3685	1	NIC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	38862	63	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6135089	6131404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_6131400_6135100
PB_novel_34736_0	chr6	-	137	1	Intergenic	novelGene_2851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6178461	6178324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_6178300_6178500
PB_novel_34739_0	chr6	+	177	1	Intergenic	novelGene_2852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGAAGTGGGC	NA	False	NA	NA	False	NA	NA	NA	6537874	6538051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_6537900_6538100
PB_novel_34742_0	chr6	-	173	1	Intergenic	novelGene_2853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	6791691	6791518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_6791500_6791700
PB_novel_34747_0	chr6	+	3669	1	Antisense	novelGene_ENSMUSG00000029752.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-43	NA	7688792	7692461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_+_7688800_7692500
PB_novel_34751_0	chr6	+	4485	1	NIC	ENSMUSG00000042447.14	novel	3710	12	NA	NA	34	-22528	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGCAAAGAAAAAAAAAAGA	16	True	NA	NA	False	NA	NA	NA	8209255	8213740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_8209300_8213700
PB_novel_34753_0	chr6	+	164	1	Intergenic	novelGene_2854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAATATATCTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	8243664	8243828	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_8243700_8243800
PB_novel_34760_0	chr6	+	175	1	Intergenic	novelGene_2855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTACAAAAAAAAAGAAATTG	NA	False	NA	NA	False	NA	NA	NA	10100452	10100627	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_10100500_10100600
PB_novel_34761_0	chr6	+	176	1	Intergenic	novelGene_2856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	10709261	10709437	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_10709300_10709400
PB_novel_34763_0	chr6	+	168	1	Intergenic	novelGene_2857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	11263439	11263607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_11263400_11263600
PB_novel_34764_0	chr6	+	176	1	Intergenic	novelGene_2858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAAATTTATTATT	NA	False	NA	NA	False	NA	NA	NA	11286353	11286529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_11286400_11286500
PB_novel_34771_0	chr6	+	177	1	Intergenic	novelGene_2859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12831372	12831549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_12831400_12831500
PB_novel_34785_0	chr6	-	176	1	Intergenic	novelGene_2860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	15733808	15733632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_15733600_15733800
PB_novel_34790_0	chr6	-	176	1	Intergenic	novelGene_2861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15983638	15983462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_15983500_15983600
PB_novel_34802_0	chr6	-	171	1	Intergenic	novelGene_2862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	18569794	18569623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_18569600_18569800
PB_novel_34805_0	chr6	-	176	1	Intergenic	novelGene_2863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAATTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	18967789	18967613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_18967600_18967800
PB_novel_34819_0	chr6	-	171	1	Intergenic	novelGene_2864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATGTAGCAATGTG	3683	False	NA	NA	False	NA	NA	NA	22388386	22388215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_22388200_22388400
PB_novel_34821_0	chr6	-	163	1	Intergenic	novelGene_2865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	22434322	22434159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_22434200_22434300
PB_novel_34828_0	chr6	+	173	1	Intergenic	novelGene_2866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	22830877	22831050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_22830900_22831000
PB_novel_34835_0	chr6	+	802	1	Antisense	novelGene_ENSMUSG00000106946.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24659536	24660338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_+_24659500_24660300
PB_novel_34838_0	chr6	+	152	1	Intergenic	novelGene_2867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATGATAATAAATAAACCT	5500	False	NA	NA	False	NA	NA	NA	24753840	24753992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_24753800_24754000
PB_novel_34839_0	chr6	+	167	1	Intergenic	novelGene_2868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAGGAATA	NA	False	NA	NA	False	NA	NA	NA	24911462	24911629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_24911500_24911600
PB_novel_34842_0	chr6	+	176	1	Intergenic	novelGene_2869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAATTGTAATCAATT	NA	False	NA	NA	False	NA	NA	NA	26968337	26968513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_26968300_26968500
PB_novel_34844_0	chr6	+	173	1	Intergenic	novelGene_2870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACCAAACA	NA	False	NA	NA	False	NA	NA	NA	28102240	28102413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_28102200_28102400
PB_novel_34848_0	chr6	+	182	1	Intergenic	novelGene_2871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	28443159	28443341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_28443200_28443300
PB_novel_34849_0	chr6	+	172	1	Intergenic	novelGene_2872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAACAAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	28466463	28466635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_28466500_28466600
PB_novel_34856_0	chr6	-	177	1	Intergenic	novelGene_2873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	28673773	28673596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_28673600_28673800
PB_novel_34857_0	chr6	-	187	1	Intergenic	novelGene_2874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	28786352	28786165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_28786200_28786400
PB_novel_34858_0	chr6	-	5424	1	Antisense	novelGene_ENSMUSG00000103899.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAAAAGTAAATTAA	NA	False	NA	NA	False	NA	NA	NA	28802887	28797463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_28797500_28802900
PB_novel_34862_0	chr6	-	178	1	Intergenic	novelGene_2875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	3575	False	NA	NA	False	NA	NA	NA	29161438	29161260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_29161300_29161400
PB_novel_34874_0	chr6	-	188	1	Intergenic	novelGene_2876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAGAAAGCAA	8187	False	NA	NA	False	NA	NA	NA	29372331	29372143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_29372100_29372300
PB_novel_34883_0	chr6	-	212	1	Intergenic	novelGene_2877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	29577512	29577300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_29577300_29577500
PB_novel_34884_0	chr6	+	172	1	Intergenic	novelGene_2878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAATTAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	29602949	29603121	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_29602900_29603100
PB_novel_34885_0	chr6	+	172	1	Intergenic	novelGene_2879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAATTTTAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	29604333	29604505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_29604300_29604500
PB_novel_34891_0	chr6	+	189	1	Intergenic	novelGene_2880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	29648395	29648584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_29648400_29648600
PB_novel_34893_1	chr6	-	177	1	Intergenic	novelGene_2881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAGCAC	8371	False	NA	NA	False	NA	NA	NA	29661544	29661367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_29661400_29661500
PB_novel_34897_0	chr6	+	159	1	Intergenic	novelGene_2882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAAAAGAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	29688758	29688917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_29688800_29688900
PB_novel_34898_0	chr6	+	167	1	Intergenic	novelGene_2883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAGAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	29691841	29692008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_29691800_29692000
PB_novel_34902_0	chr6	+	241	1	Intergenic	novelGene_2884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAATTAAAAAGAAAAA	2238	False	NA	NA	False	AATAAA	-9	NA	29775246	29775487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_29775200_29775500
PB_novel_34906_0	chr6	+	169	1	Intergenic	novelGene_2885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	29788301	29788470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_29788300_29788500
PB_novel_34908_0	chr6	+	187	1	Intergenic	novelGene_2886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACCAATAGCAA	NA	False	NA	NA	False	NA	NA	NA	29816212	29816399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_29816200_29816400
PB_novel_34912_0	chr6	+	176	1	Intergenic	novelGene_2887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	29956168	29956344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_29956200_29956300
PB_novel_34918_0	chr6	+	170	1	Intergenic	novelGene_2888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29999381	29999551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_29999400_29999600
PB_novel_34923_0	chr6	+	158	1	Intergenic	novelGene_2889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	30037852	30038010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_30037900_30038000
PB_novel_34925_5	chr6	+	176	1	Intergenic	novelGene_2890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1710	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACCCA	NA	False	NA	NA	False	NA	NA	NA	30038748	30038924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_30038700_30038900
PB_novel_34938_0	chr6	-	158	1	Intergenic	novelGene_2891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATAAAATAAATATTTAAA	1057	False	NA	NA	False	NA	NA	NA	30146044	30145886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_30145900_30146000
PB_novel_34944_0	chr6	+	172	1	Intergenic	novelGene_2892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAATGTCT	NA	False	NA	NA	False	NA	NA	NA	30203678	30203850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_30203700_30203800
PB_novel_34947_0	chr6	-	203	1	Intergenic	novelGene_2893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30233663	30233460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_30233500_30233700
PB_novel_34950_0	chr6	+	164	1	Intergenic	novelGene_2894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	30290236	30290400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_30290200_30290400
PB_novel_34952_0	chr6	+	160	1	Intergenic	novelGene_2895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAGAAGAAGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	30324459	30324619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_30324500_30324600
PB_novel_34960_1	chr6	-	171	1	Intergenic	novelGene_2896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAACAAAACAA	3504	False	NA	NA	False	NA	NA	NA	30474046	30473875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_30473900_30474000
PB_novel_34964_0	chr6	+	167	1	Intergenic	novelGene_2897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTCTTTAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	30537393	30537560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_30537400_30537600
PB_novel_34971_0	chr6	-	174	1	Intergenic	novelGene_2898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	30844563	30844389	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_30844400_30844600
PB_novel_34983_0	chr6	+	181	1	Intergenic	novelGene_2899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTTAAAAAAAAGATAAAAA	NA	False	NA	NA	False	NA	NA	NA	31607693	31607874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_31607700_31607900
PB_novel_34993_1	chr6	+	4601	1	Intergenic	novelGene_2900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAAACC	4815	False	NA	NA	False	NA	NA	NA	32973100	32977701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_32973100_32977700
PB_novel_35005_0	chr6	+	177	1	Intergenic	novelGene_2901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	33602342	33602519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_33602300_33602500
PB_novel_35022_0	chr6	+	177	1	Intergenic	novelGene_2902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAGAAAGAAATC	5999	False	NA	NA	False	NA	NA	NA	34761706	34761883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_34761700_34761900
PB_novel_35026_0	chr6	+	2961	1	Intergenic	novelGene_2903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	3941	False	NA	NA	False	NA	NA	NA	34877339	34880300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_34877300_34880300
PB_novel_35027_0	chr6	+	176	1	Intergenic	novelGene_2904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	34893110	34893286	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_34893100_34893300
PB_novel_35032_0	chr6	+	2632	1	Intergenic	novelGene_2905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAATATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35016551	35019183	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_35016600_35019200
PB_novel_35041_0	chr6	+	178	1	Intergenic	novelGene_2906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	35124412	35124590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_35124400_35124600
PB_novel_35043_1	chr6	-	172	1	Intergenic	novelGene_2907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAGAAAAACAGAAA	NA	False	NA	0	True	NA	NA	NA	35151171	35150999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_35151000_35151200
PB_novel_35044_0	chr6	-	175	1	Intergenic	novelGene_2908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAGAAAATTA	NA	False	NA	NA	False	NA	NA	NA	35153914	35153739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_35153700_35153900
PB_novel_35045_0	chr6	-	133	1	Intergenic	novelGene_2909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35154234	35154101	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_35154100_35154200
PB_novel_35046_0	chr6	-	174	1	Intergenic	novelGene_2910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTGA	NA	False	NA	NA	False	NA	NA	NA	35156410	35156236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_35156200_35156400
PB_novel_35048_0	chr6	+	169	1	Intergenic	novelGene_2911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAACAAAAAAC	3478	False	NA	NA	False	NA	NA	NA	35208916	35209085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_35208900_35209100
PB_novel_35050_0	chr6	+	160	1	Intergenic	novelGene_2912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAACAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	35249913	35250073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_35249900_35250100
PB_novel_35055_0	chr6	-	171	1	Intergenic	novelGene_2913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35348246	35348075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_35348100_35348200
PB_novel_35064_0	chr6	+	136	1	Intergenic	novelGene_2914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37384501	37384637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_37384500_37384600
PB_novel_35066_0	chr6	+	177	1	Intergenic	novelGene_2915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	37432323	37432500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_37432300_37432500
PB_novel_35068_0	chr6	+	172	1	Intergenic	novelGene_2916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAATTAAAAAAAAAA	2741	False	NA	NA	False	NA	NA	NA	37532963	37533135	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_37533000_37533100
PB_novel_35069_0	chr6	-	151	1	Intergenic	novelGene_2917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATATAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	37534013	37533862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_37533900_37534000
PB_novel_35071_0	chr6	-	177	1	Intergenic	novelGene_2918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	37556421	37556244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_37556200_37556400
PB_novel_35072_0	chr6	+	176	1	Intergenic	novelGene_2919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	37575973	37576149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_37576000_37576100
PB_novel_35077_0	chr6	+	171	1	Intergenic	novelGene_2920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGCAAACAA	NA	False	NA	NA	False	NA	NA	NA	37723037	37723208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_37723000_37723200
PB_novel_35078_0	chr6	+	1116	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-111	-540	-111	540	mono-exon	FALSE	NA	NA	NA	NA	NA	1010	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	AATAAA	-14	NA	37782909	37784025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_37782900_37784000
PB_novel_35079_0	chr6	-	159	1	Intergenic	novelGene_2921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37814915	37814756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_37814800_37814900
PB_novel_35080_0	chr6	+	175	1	Intergenic	novelGene_2922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	37821720	37821895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_37821700_37821900
PB_novel_35081_0	chr6	+	176	1	Intergenic	novelGene_2923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37826092	37826268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_37826100_37826300
PB_novel_35089_0	chr6	-	178	1	Intergenic	novelGene_2924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAAAGCTATTGAT	3292	False	NA	NA	False	NA	NA	NA	38019994	38019816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38019800_38020000
PB_novel_35091_2	chr6	+	161	1	Intergenic	novelGene_2925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	38193575	38193736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_38193600_38193700
PB_novel_35096_0	chr6	+	155	1	Intergenic	novelGene_2926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATCTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38212821	38212976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_38212800_38213000
PB_novel_35098_0	chr6	-	175	1	Intergenic	novelGene_2927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	8695	False	NA	NA	False	NA	NA	NA	38245605	38245430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38245400_38245600
PB_novel_35108_0	chr6	-	175	1	Intergenic	novelGene_2931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAATAAAAATAAAA	4953	False	NA	NA	False	NA	NA	NA	38350589	38350414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38350400_38350600
PB_novel_35111_1	chr6	-	185	1	Intergenic	novelGene_2930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	5814	False	NA	NA	False	NA	NA	NA	38340118	38339933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38339900_38340100
PB_novel_35112_0	chr6	-	161	1	Intergenic	novelGene_2928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATTAAAAAAAAAATAG	4774	False	NA	NA	False	NA	NA	NA	38314977	38314816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38314800_38315000
PB_novel_35113_0	chr6	-	174	1	Intergenic	novelGene_2929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	38325722	38325548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38325500_38325700
PB_novel_35118_0	chr6	+	118	1	Intergenic	novelGene_2932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGGAATCAG	5091	False	NA	NA	False	NA	NA	NA	38351142	38351260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_38351100_38351300
PB_novel_35120_0	chr6	-	156	1	Intergenic	novelGene_2933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	38359932	38359776	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38359800_38359900
PB_novel_35124_0	chr6	+	110	1	Intergenic	novelGene_2934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38409628	38409738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_38409600_38409700
PB_novel_35126_0	chr6	+	1393	1	NIC	ENSMUSG00000038538.18	novel	14644	17	NA	NA	20	-28220	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38410904	38412297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_38410900_38412300
PB_novel_35129_0	chr6	-	174	1	Intergenic	novelGene_2935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAATCAATAAAACA	NA	False	NA	NA	False	NA	NA	NA	38443093	38442919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38442900_38443100
PB_novel_35131_0	chr6	+	168	1	Intergenic	novelGene_2936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAAGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	38453785	38453953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_38453800_38454000
PB_novel_35132_0	chr6	-	1063	1	Antisense	novelGene_ENSMUSG00000038538.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38479825	38478762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_38478800_38479800
PB_novel_35134_0	chr6	-	178	1	Intergenic	novelGene_2937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGCCG	NA	False	NA	NA	False	NA	NA	NA	38505391	38505213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38505200_38505400
PB_novel_35136_1	chr6	-	181	1	Intergenic	novelGene_2938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38519557	38519376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38519400_38519600
PB_novel_35137_0	chr6	-	179	1	Intergenic	novelGene_2939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAACATTTTAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	38521030	38520851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38520900_38521000
PB_novel_35138_0	chr6	-	197	1	Intergenic	novelGene_2943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38538365	38538168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38538200_38538400
PB_novel_35138_1	chr6	-	329	2	Antisense	novelGene_ENSMUSG00000029823.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAACATTTTAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	38538365	38520851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_38520994_38538178
PB_novel_35140_1	chr6	-	163	1	Intergenic	novelGene_2942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	38535536	38535373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38535400_38535500
PB_novel_35141_0	chr6	-	190	1	Intergenic	novelGene_2940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATTCTC	NA	False	NA	NA	False	NA	NA	NA	38523370	38523180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38523200_38523400
PB_novel_35143_0	chr6	-	177	1	Intergenic	novelGene_2941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAACAAAACAAAAC	9537	False	NA	NA	False	NA	NA	NA	38524117	38523940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38523900_38524100
PB_novel_35146_0	chr6	+	4171	1	Intergenic	novelGene_2944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAATCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38548113	38552284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_38548100_38552300
PB_novel_35149_0	chr6	+	175	1	Intergenic	novelGene_2945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACCAGTAA	729	False	NA	NA	False	NA	NA	NA	38559684	38559859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_38559700_38559900
PB_novel_35155_0	chr6	-	172	1	Intergenic	novelGene_2946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGATTTGAGGAA	NA	False	NA	NA	False	NA	NA	NA	38647901	38647729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38647700_38647900
PB_novel_35165_0	chr6	-	167	1	Intergenic	novelGene_2947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATAAAAAACAACCAAAACA	NA	False	NA	NA	False	NA	NA	NA	38864064	38863897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_38863900_38864100
PB_novel_35167_0	chr6	-	159	1	Intergenic	novelGene_2948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAACTTAAAAAA	1260	False	NA	NA	False	NA	NA	NA	39066325	39066166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39066200_39066300
PB_novel_35178_0	chr6	+	177	1	Intergenic	novelGene_2949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAACTC	NA	False	NA	NA	False	NA	NA	NA	39271579	39271756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_39271600_39271800
PB_novel_35181_0	chr6	-	177	1	Intergenic	novelGene_2950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATATATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	39288260	39288083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39288100_39288300
PB_novel_35186_3	chr6	+	177	1	Intergenic	novelGene_2951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	523	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	39345663	39345840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_39345700_39345800
PB_novel_35191_0	chr6	+	345	1	Intergenic	novelGene_2952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAATAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	39368764	39369109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_39368800_39369100
PB_novel_35192_0	chr6	+	182	1	Intergenic	novelGene_2953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGACTT	1607	False	NA	NA	False	NA	NA	NA	39383005	39383187	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_39383000_39383200
PB_novel_35193_0	chr6	-	172	1	Intergenic	novelGene_2954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATGT	NA	False	NA	NA	False	NA	NA	NA	39384921	39384749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39384700_39384900
PB_novel_35201_0	chr6	+	172	1	Intergenic	novelGene_2955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	39477857	39478029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_39477900_39478000
PB_novel_35207_0	chr6	-	178	1	Intergenic	novelGene_2956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	39514859	39514681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39514700_39514900
PB_novel_35211_0	chr6	-	172	1	Intergenic	novelGene_2957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	39537636	39537464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39537500_39537600
PB_novel_35215_0	chr6	-	199	1	Intergenic	novelGene_2958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	39562055	39561856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39561900_39562100
PB_novel_35217_0	chr6	+	3722	1	Antisense	novelGene_ENSMUSG00000002413.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6964	False	NA	NA	False	NA	NA	NA	39580881	39584603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_+_39580900_39584600
PB_novel_35223_0	chr6	-	175	1	Intergenic	novelGene_2959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAATTGCCTG	NA	False	NA	NA	False	NA	NA	NA	39664930	39664755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39664800_39664900
PB_novel_35227_0	chr6	+	175	1	Intergenic	novelGene_2960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATCTAGCATCC	NA	False	NA	NA	False	NA	NA	NA	39733725	39733900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_39733700_39733900
PB_novel_35228_0	chr6	-	176	1	Intergenic	novelGene_2961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATCAGTTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	39742488	39742312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39742300_39742500
PB_novel_35232_0	chr6	-	174	1	Intergenic	novelGene_2962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAATGGCAACAACA	NA	False	NA	-1	True	NA	NA	NA	39764387	39764213	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39764200_39764400
PB_novel_35233_0	chr6	-	171	1	Intergenic	novelGene_2963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	39784753	39784582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39784600_39784800
PB_novel_35234_0	chr6	-	172	1	Intergenic	novelGene_2964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAATAGCATTAAATAT	NA	False	NA	NA	False	NA	NA	NA	39818834	39818662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39818700_39818800
PB_novel_35235_0	chr6	-	180	1	Intergenic	novelGene_2965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTG	NA	False	NA	NA	False	NA	NA	NA	39819616	39819436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_39819400_39819600
PB_novel_35236_0	chr6	+	184	1	Intergenic	novelGene_2966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAGAAAGCTGA	1	True	NA	NA	False	NA	NA	NA	39872214	39872398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_39872200_39872400
PB_novel_35237_0	chr6	-	3615	1	Intergenic	novelGene_2967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACACAGAAAAAAAAAA	NA	False	NA	NA	False	TATAAA	-41	NA	40350638	40347023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_40347000_40350600
PB_novel_35242_0	chr6	+	169	1	Intergenic	novelGene_2968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAAATATATT	NA	False	NA	NA	False	NA	NA	NA	40456134	40456303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_40456100_40456300
PB_novel_35247_0	chr6	-	169	1	Intergenic	novelGene_2969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATAAATCTTTAAAAGAAA	1991	False	NA	NA	False	NA	NA	NA	40611115	40610946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_40610900_40611100
PB_novel_35251_0	chr6	-	177	1	Intergenic	novelGene_2970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATCC	NA	False	NA	NA	False	NA	NA	NA	42278289	42278112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_42278100_42278300
PB_novel_35258_0	chr6	+	175	1	Intergenic	novelGene_2971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	43313280	43313455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_43313300_43313500
PB_novel_35264_0	chr6	-	169	1	Intergenic	novelGene_2972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	5264	False	NA	NA	False	NA	NA	NA	46142632	46142463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_46142500_46142600
PB_novel_35267_0	chr6	+	174	1	Intergenic	novelGene_2973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAAACAAAAACC	NA	False	NA	NA	False	NA	NA	NA	46729660	46729834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_46729700_46729800
PB_novel_35276_0	chr6	-	163	1	Intergenic	novelGene_2974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCTTTTTAAAAAAATTCT	NA	False	NA	NA	False	NA	NA	NA	47317296	47317133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_47317100_47317300
PB_novel_35277_0	chr6	+	174	1	Intergenic	novelGene_2975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	47324447	47324621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_47324400_47324600
PB_novel_35286_0	chr6	+	168	1	Intergenic	novelGene_2976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAATAATAATAATT	949	False	NA	NA	False	NA	NA	NA	47546655	47546823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_47546700_47546800
PB_novel_35288_0	chr6	+	5842	1	Antisense	novelGene_ENSMUSG00000029687.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGCAAGATGTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47572150	47577992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_+_47572200_47578000
PB_novel_35292_0	chr6	-	180	1	Intergenic	novelGene_2977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	47607177	47606997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_47607000_47607200
PB_novel_35304_0	chr6	+	167	1	Intergenic	novelGene_2978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47756300	47756467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_47756300_47756500
PB_novel_35306_0	chr6	-	141	1	Intergenic	novelGene_2979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGTAGAAAA	7932	False	NA	NA	False	NA	NA	NA	47772752	47772611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_47772600_47772800
PB_novel_35310_0	chr6	-	177	1	Intergenic	novelGene_2980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47834842	47834665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_47834700_47834800
PB_novel_35317_0	chr6	-	168	1	Intergenic	novelGene_2981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47889334	47889166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_47889200_47889300
PB_novel_35318_0	chr6	-	181	1	Intergenic	novelGene_2982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATGCATTA	NA	False	NA	NA	False	NA	NA	NA	47890748	47890567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_47890600_47890700
PB_novel_35321_0	chr6	+	172	1	Intergenic	novelGene_2983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTCAAAAAACAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	47917267	47917439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_47917300_47917400
PB_novel_35325_0	chr6	-	155	1	Intergenic	novelGene_2984	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATCCC	NA	False	NA	NA	False	NA	NA	NA	47960406	47960251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_47960300_47960400
PB_novel_35332_0	chr6	+	177	1	Intergenic	novelGene_2985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATTATTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48056709	48056886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_48056700_48056900
PB_novel_35335_0	chr6	+	170	1	Intergenic	novelGene_2986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTTAAAAAAAGAAAACAA	NA	False	NA	NA	False	NA	NA	NA	48336531	48336701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_48336500_48336700
PB_novel_35340_12	chr6	-	2177	3	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-15	2155	multi-exon	TRUE	non_canonical	0	0	junction_1	220.5	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACTTGAAAAAAAAAAATA	NA	False	NA	NA	False	AATAAA	-8	NA	48502039	48499332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_48500379_48500856_48501909_48501960
PB_novel_35340_23	chr6	-	2185	3	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-16	2162	multi-exon	FALSE	non_canonical	0	0	junction_1	220.5	100	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATAAGGGCTG	NA	False	NA	NA	False	AATAAA	-15	NA	48502040	48499325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_48500391_48500868_48501909_48501960
PB_novel_35340_28	chr6	-	2236	2	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-15	2162	multi-exon	FALSE	non_canonical	0	0	junction_1	0	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATAAGGGCTG	NA	False	NA	NA	False	AATAAA	-15	NA	48502039	48499325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_48500391_48500868
PB_novel_35340_4	chr6	-	2229	2	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-15	2155	multi-exon	FALSE	non_canonical	0	0	junction_1	0	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACTTGAAAAAAAAAAATA	NA	False	NA	NA	False	AATAAA	-8	NA	48502039	48499332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_48500379_48500856
PB_novel_35344_0	chr6	-	175	1	Intergenic	novelGene_2987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	48870821	48870646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_48870600_48870800
PB_novel_35345_0	chr6	+	174	1	Intergenic	novelGene_2988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	137	False	NA	NA	False	NA	NA	NA	48977389	48977563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_48977400_48977600
PB_novel_35348_0	chr6	+	2457	1	Genic_Genomic	ENSMUSG00000029815.13	novel	NA	NA	NA	NA	-3700	1212	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAGAAAG	196	False	NA	NA	False	NA	NA	NA	49055818	49058275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_+_49055800_49058300
PB_novel_35351_0	chr6	+	173	1	Intergenic	novelGene_2989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAACCCC	NA	False	NA	NA	False	NA	NA	NA	49135001	49135174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_49135000_49135200
PB_novel_35356_0	chr6	+	2092	1	Intergenic	novelGene_2990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49185128	49187220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_49185100_49187200
PB_novel_35359_0	chr6	+	176	1	Intergenic	novelGene_2991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAAACAGAGGTAT	NA	False	NA	NA	False	NA	NA	NA	49212702	49212878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_49212700_49212900
PB_novel_35361_1	chr6	-	188	1	Intergenic	novelGene_2992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	49265229	49265041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_49265000_49265200
PB_novel_35369_0	chr6	+	173	1	Intergenic	novelGene_2993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49277407	49277580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_49277400_49277600
PB_novel_35370_0	chr6	-	177	1	Intergenic	novelGene_2994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	49290617	49290440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_49290400_49290600
PB_novel_35379_0	chr6	+	176	1	Intergenic	novelGene_2995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATGCACACTGCAG	NA	False	NA	NA	False	NA	NA	NA	50013235	50013411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_50013200_50013400
PB_novel_35387_0	chr6	+	160	1	Intergenic	novelGene_2996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAAATCTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50538759	50538919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_50538800_50538900
PB_novel_35394_0	chr6	+	175	1	Intergenic	novelGene_2997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAGCAAAGATG	3565	False	NA	NA	False	NA	NA	NA	51481041	51481216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_51481000_51481200
PB_novel_35396_0	chr6	-	176	1	Intergenic	novelGene_2998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	51496494	51496318	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_51496300_51496500
PB_novel_35398_0	chr6	-	2306	1	Intergenic	novelGene_2999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51507009	51504703	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_51504700_51507000
PB_novel_35407_0	chr6	+	1627	1	Intergenic	novelGene_3000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGGAAAAAAAAAAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	51853917	51855544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_51853900_51855500
PB_novel_35415_0	chr6	+	169	1	Intergenic	novelGene_3001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATAAAAGTTTT	1869	False	NA	NA	False	NA	NA	NA	52120270	52120439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_52120300_52120400
PB_novel_35421_0	chr6	-	134	1	Intergenic	novelGene_3002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	5062	False	NA	NA	False	NA	NA	NA	52255767	52255633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_52255600_52255800
PB_novel_35425_0	chr6	-	174	1	Intergenic	novelGene_3003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	5504	False	NA	NA	False	NA	NA	NA	52308000	52307826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_52307800_52308000
PB_novel_35429_0	chr6	+	174	1	Intergenic	novelGene_3004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52348643	52348817	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_52348600_52348800
PB_novel_35432_0	chr6	-	175	1	Intergenic	novelGene_3005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACTA	NA	False	NA	NA	False	NA	NA	NA	52422759	52422584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_52422600_52422800
PB_novel_35435_0	chr6	+	179	1	Intergenic	novelGene_3006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAATAATAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	52461006	52461185	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_52461000_52461200
PB_novel_35445_0	chr6	-	171	1	Intergenic	novelGene_3007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	53660050	53659879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_53659900_53660000
PB_novel_35448_0	chr6	-	135	1	Intergenic	novelGene_3008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTTTTTTAAAAAAAAAA	NA	False	NA	-2	True	NA	NA	NA	54116575	54116440	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_54116400_54116600
PB_novel_35457_0	chr6	+	177	1	Intergenic	novelGene_3009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	54560893	54561070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_54560900_54561100
PB_novel_35460_0	chr6	-	176	1	Intergenic	novelGene_3010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGATAAACTAT	NA	False	NA	NA	False	NA	NA	NA	54603229	54603053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_54603100_54603200
PB_novel_35461_0	chr6	+	177	1	Intergenic	novelGene_3011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	723	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	54647458	54647635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_54647500_54647600
PB_novel_35462_0	chr6	+	177	1	Intergenic	novelGene_3012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAATTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54696197	54696374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_54696200_54696400
PB_novel_35470_0	chr6	+	176	1	Intergenic	novelGene_3013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATCTTAAAAAAAAAAAAAAA	5137	False	NA	NA	False	NA	NA	NA	54871597	54871773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_54871600_54871800
PB_novel_35472_0	chr6	+	167	1	Intergenic	novelGene_3014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAAAAAAAAG	9261	False	NA	NA	False	NA	NA	NA	54906312	54906479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_54906300_54906500
PB_novel_35484_0	chr6	-	184	1	Intergenic	novelGene_3015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	56025594	56025410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_56025400_56025600
PB_novel_35493_0	chr6	-	4451	1	Intergenic	novelGene_3016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56814335	56809884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_56809900_56814300
PB_novel_35498_0	chr6	-	182	1	Intergenic	novelGene_3017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAGACTTAAAAAGTAT	NA	False	NA	-16	True	NA	NA	NA	57513491	57513309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_57513300_57513500
PB_novel_35500_0	chr6	-	180	1	Intergenic	novelGene_3018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57726869	57726689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_57726700_57726900
PB_novel_35502_0	chr6	-	2863	1	Intergenic	novelGene_3019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACCCTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58624066	58621203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_58621200_58624100
PB_novel_35514_0	chr6	-	217	1	Intergenic	novelGene_3020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAAACTTATTGTATACT	NA	False	NA	NA	False	NA	NA	NA	60284709	60284492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_60284500_60284700
PB_novel_35531_0	chr6	+	1603	1	Intergenic	novelGene_3021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	64874822	64876425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_64874800_64876400
PB_novel_35537_0	chr6	+	173	1	Intergenic	novelGene_3022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATCAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	64981874	64982047	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_64981900_64982000
PB_novel_35542_0	chr6	-	176	1	Intergenic	novelGene_3023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTTTGACTT	8901	False	NA	NA	False	NA	NA	NA	65013846	65013670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_65013700_65013800
PB_novel_35543_0	chr6	-	146	1	Intergenic	novelGene_3024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	2302	False	NA	NA	False	NA	NA	NA	65022450	65022304	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_65022300_65022400
PB_novel_35551_0	chr6	-	170	1	Intergenic	novelGene_3025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	66045286	66045116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_66045100_66045300
PB_novel_35561_0	chr6	-	182	1	Intergenic	novelGene_3026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATAGCTC	NA	False	NA	NA	False	NA	NA	NA	67132148	67131966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_67132000_67132100
PB_novel_35563_0	chr6	+	169	1	Intergenic	novelGene_3027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAAAAGATTTAT	3086	False	NA	NA	False	NA	NA	NA	67149343	67149512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_67149300_67149500
PB_novel_35566_0	chr6	+	167	1	FSM	ENSMUSG00000047905.11	ENSMUST00000120174.2	465	1	382	-84	382	84	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAGAGTTGTAAAAAAAAAA	NA	False	NA	11	True	ATTAAA	-10	NA	67182984	67183151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_67183000_67183200
PB_novel_35567_0	chr6	+	176	1	Intergenic	novelGene_3028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAGAAAAGGAACTGA	NA	False	NA	NA	False	NA	NA	NA	67183908	67184084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_67183900_67184100
PB_novel_35569_0	chr6	+	175	1	Intergenic	novelGene_3029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	67199006	67199181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_67199000_67199200
PB_novel_35570_0	chr6	-	194	1	Intergenic	novelGene_3030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	67204750	67204556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_67204600_67204800
PB_novel_35571_0	chr6	+	175	1	Intergenic	novelGene_3031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAACAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	67217853	67218028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_67217900_67218000
PB_novel_35572_0	chr6	-	175	1	Intergenic	novelGene_3032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGATAAG	7785	False	NA	NA	False	NA	NA	NA	67230122	67229947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_67229900_67230100
PB_novel_35574_0	chr6	-	558	1	Intergenic	novelGene_3034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67255759	67255201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_67255200_67255800
PB_novel_35576_0	chr6	+	198	1	Intergenic	novelGene_3035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTAT	NA	False	NA	NA	False	NA	NA	NA	67335070	67335268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_67335100_67335300
PB_novel_35577_0	chr6	-	172	1	Intergenic	novelGene_3036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAGAAGAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	67900904	67900732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_67900700_67900900
PB_novel_35578_0	chr6	-	193	1	Intergenic	novelGene_3037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAATAAATAAACAA	NA	False	NA	NA	False	NA	NA	NA	67902504	67902311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_67902300_67902500
PB_novel_35590_0	chr6	+	170	1	Intergenic	novelGene_3038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAATATTTAAAAGAA	5125	False	NA	NA	False	NA	NA	NA	70854588	70854758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_70854600_70854800
PB_novel_35591_0	chr6	-	1012	1	Intergenic	novelGene_3039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	70876169	70875157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_70875200_70876200
PB_novel_35592_0	chr6	+	177	1	Intergenic	novelGene_3040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAGGACAAACAA	1861	False	NA	NA	False	NA	NA	NA	70967790	70967967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_70967800_70968000
PB_novel_35593_0	chr6	-	160	1	Intergenic	novelGene_3041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCTTTAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	70982817	70982657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_70982700_70982800
PB_novel_35597_2	chr6	+	3184	1	FSM	ENSMUSG00000098623.3	ENSMUST00000184382.3	131	1	36	-3089	36	3089	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71248690	71251874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_71248700_71251900
PB_novel_35600_0	chr6	+	796	1	Intergenic	novelGene_3042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	2462	False	NA	NA	False	NA	NA	NA	71379771	71380567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_71379800_71380600
PB_novel_35601_0	chr6	+	177	1	Intergenic	novelGene_3043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	71387775	71387952	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_71387800_71388000
PB_novel_35605_0	chr6	-	195	1	Intergenic	novelGene_3044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	71541101	71540906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_71540900_71541100
PB_novel_35606_0	chr6	-	171	1	Intergenic	novelGene_3045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAATATTCAAAACTA	NA	False	NA	NA	False	NA	NA	NA	71582058	71581887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_71581900_71582100
PB_novel_35608_0	chr6	+	174	1	Intergenic	novelGene_3046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71582312	71582486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_71582300_71582500
PB_novel_35611_0	chr6	-	159	1	Intergenic	novelGene_3047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAACAAAGA	NA	False	NA	NA	False	NA	NA	NA	71711503	71711344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_71711300_71711500
PB_novel_35615_0	chr6	-	2271	1	Antisense	novelGene_ENSMUSG00000052337.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71833725	71831454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_71831500_71833700
PB_novel_35623_0	chr6	-	170	1	Intergenic	novelGene_3048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTTTTAAAAAATGAAATAA	NA	False	NA	NA	False	NA	NA	NA	72145207	72145037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_72145000_72145200
PB_novel_35626_0	chr6	-	176	1	Intergenic	novelGene_3049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGAAATGCAAATC	660	False	NA	NA	False	NA	NA	NA	72234928	72234752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_72234800_72234900
PB_novel_35629_0	chr6	-	168	1	Intergenic	novelGene_3050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAAG	6776	False	NA	NA	False	NA	NA	NA	72303997	72303829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_72303800_72304000
PB_novel_35634_0	chr6	+	158	1	Intergenic	novelGene_3051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	6409	False	NA	NA	False	NA	NA	NA	72373499	72373657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_72373500_72373700
PB_novel_35644_0	chr6	+	180	1	Intergenic	novelGene_3052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72589730	72589910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_72589700_72589900
PB_novel_35647_0	chr6	-	173	1	Intergenic	novelGene_3053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAAAAAAATCCTAGAC	NA	False	NA	NA	False	NA	NA	NA	72678931	72678758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_72678800_72678900
PB_novel_35648_1	chr6	+	176	1	Intergenic	novelGene_3054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	72692660	72692836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_72692700_72692800
PB_novel_35650_1	chr6	+	1875	2	Antisense	novelGene_ENSMUSG00000055799.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72710896	72712815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_+_72711156_72711199
PB_novel_35651_0	chr6	-	160	1	Intergenic	novelGene_3055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTTTTAAAAAAAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	72711800	72711640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_72711600_72711800
PB_novel_35655_0	chr6	+	176	1	Intergenic	novelGene_3056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGATAC	NA	False	NA	NA	False	NA	NA	NA	72763057	72763233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_72763100_72763200
PB_novel_35657_0	chr6	+	169	1	Intergenic	novelGene_3057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	72768983	72769152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_72769000_72769200
PB_novel_35658_0	chr6	-	182	1	Intergenic	novelGene_3058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATATATATATATAA	7158	False	NA	NA	False	NA	NA	NA	72782093	72781911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_72781900_72782100
PB_novel_35659_1	chr6	-	178	1	Intergenic	novelGene_3063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	72940934	72940756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_72940800_72940900
PB_novel_35663_0	chr6	+	177	1	Intergenic	novelGene_3059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	72804165	72804342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_72804200_72804300
PB_novel_35672_0	chr6	-	177	1	Intergenic	novelGene_3060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAAAG	2029	False	NA	NA	False	NA	NA	NA	72883398	72883221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_72883200_72883400
PB_novel_35675_0	chr6	-	191	1	Intergenic	novelGene_3061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAGAATGAAG	5998	False	NA	NA	False	NA	NA	NA	72894175	72893984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_72894000_72894200
PB_novel_35679_0	chr6	-	181	1	Intergenic	novelGene_3062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAATAAATAAATAAACA	NA	False	NA	NA	False	NA	NA	NA	72912571	72912390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_72912400_72912600
PB_novel_35686_0	chr6	+	135	1	Intergenic	novelGene_3064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73168021	73168156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_73168000_73168200
PB_novel_35692_0	chr6	-	176	1	Intergenic	novelGene_3065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	73965315	73965139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_73965100_73965300
PB_novel_35695_0	chr6	+	173	1	Intergenic	novelGene_3066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	75862846	75863019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_75862800_75863000
PB_novel_35701_0	chr6	+	176	1	Intergenic	novelGene_3067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	77352612	77352788	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_77352600_77352800
PB_novel_35703_0	chr6	-	203	1	Intergenic	novelGene_3068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAATGCATAAATAC	NA	False	NA	NA	False	NA	NA	NA	78809715	78809512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_78809500_78809700
PB_novel_35713_0	chr6	-	177	1	Intergenic	novelGene_3069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	82126525	82126348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_82126300_82126500
PB_novel_35719_0	chr6	+	3447	1	Intergenic	novelGene_3070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82695284	82698731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_82695300_82698700
PB_novel_35729_0	chr6	+	174	1	Intergenic	novelGene_3071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAATA	5291	False	NA	NA	False	NA	NA	NA	82965834	82966008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_82965800_82966000
PB_novel_35741_0	chr6	-	171	1	Intergenic	novelGene_3072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAAAAGAAATGT	NA	False	NA	NA	False	NA	NA	NA	83159191	83159020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_83159000_83159200
PB_novel_35751_0	chr6	-	176	1	Intergenic	novelGene_3073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83682268	83682092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_83682100_83682300
PB_novel_35754_0	chr6	+	1799	1	FSM	ENSMUSG00000034744.14	ENSMUST00000205681.2	752	1	-1049	2	-15	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GTAAAAAAAAAAAAAAAAAA	9469	False	NA	NA	False	NA	NA	NA	83772174	83773973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_83772200_83774000
PB_novel_35756_0	chr6	-	177	1	Intergenic	novelGene_3074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAAAAAAAAGAAATACTT	NA	False	NA	NA	False	NA	NA	NA	83788762	83788585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_83788600_83788800
PB_novel_35761_0	chr6	+	143	1	Intergenic	novelGene_3075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83829913	83830056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_83829900_83830100
PB_novel_35762_0	chr6	-	188	1	Intergenic	novelGene_3076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAATTTTTAAAATTATAT	9832	False	NA	NA	False	AATAAA	-7	NA	83835290	83835102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_83835100_83835300
PB_novel_35763_0	chr6	+	176	1	Intergenic	novelGene_3077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGCTG	1086	False	NA	NA	False	NA	NA	NA	83842732	83842908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_83842700_83842900
PB_novel_35769_0	chr6	-	201	1	Intergenic	novelGene_3078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAACAAAAGTTCAGAAAG	NA	False	NA	NA	False	NA	NA	NA	83893286	83893085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_83893100_83893300
PB_novel_35773_0	chr6	+	177	1	Intergenic	novelGene_3079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATCTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83913545	83913722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_83913500_83913700
PB_novel_35798_0	chr6	+	181	1	Intergenic	novelGene_3080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATATTAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	85511278	85511459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_85511300_85511500
PB_novel_35800_1	chr6	-	158	1	Intergenic	novelGene_3081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAATAAAATAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	85603239	85603081	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_85603100_85603200
PB_novel_35805_0	chr6	+	2472	1	Intergenic	novelGene_3082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85659955	85662427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_85660000_85662400
PB_novel_35810_2	chr6	+	1510	1	FSM	ENSMUSG00000040078.10	ENSMUST00000160012.2	480	1	-118	-912	-118	912	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-14	NA	85820843	85822353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_85820800_85822400
PB_novel_35818_0	chr6	+	168	1	Intergenic	novelGene_3083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATCTAAAAAGAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	86294780	86294948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_86294800_86294900
PB_novel_35822_0	chr6	+	186	1	Intergenic	novelGene_3084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAATAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86357359	86357545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_86357400_86357500
PB_novel_35827_0	chr6	-	174	1	Intergenic	novelGene_3085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAACCCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86424688	86424514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_86424500_86424700
PB_novel_35831_0	chr6	-	154	1	Intergenic	novelGene_3086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAGGTAAACAAA	8173	False	NA	NA	False	NA	NA	NA	86464032	86463878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_86463900_86464000
PB_novel_35836_0	chr6	+	172	1	Intergenic	novelGene_3087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAACA	3085	False	NA	NA	False	NA	NA	NA	86490594	86490766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_86490600_86490800
PB_novel_35841_0	chr6	-	180	1	Intergenic	novelGene_3088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGACAAAAATTTTAA	9572	False	NA	NA	False	NA	NA	NA	86506717	86506537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_86506500_86506700
PB_novel_35842_0	chr6	-	174	1	Intergenic	novelGene_3089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATTTTAAAAATAAA	5194	False	NA	NA	False	NA	NA	NA	86511095	86510921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_86510900_86511100
PB_novel_35844_0	chr6	-	178	1	Intergenic	novelGene_3090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAATAAATCTA	4229	False	NA	NA	False	NA	NA	NA	86512060	86511882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_86511900_86512100
PB_novel_35845_0	chr6	-	174	1	Intergenic	novelGene_3091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATGCTCACTTG	2727	False	NA	NA	False	NA	NA	NA	86513562	86513388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_86513400_86513600
PB_novel_35849_0	chr6	+	117	1	Intergenic	novelGene_3092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATCTGAAAGTT	3784	False	NA	21	True	AATAAA	-6	NA	86543494	86543611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_86543500_86543600
PB_novel_35850_0	chr6	-	174	1	Antisense	novelGene_ENSMUSG00000097048.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATATATGTAACT	NA	False	NA	NA	False	NA	NA	NA	86558506	86558332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_86558300_86558500
PB_novel_35852_0	chr6	-	194	1	Intergenic	novelGene_3093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAATTAAAAAAAA	4535	False	NA	NA	False	NA	NA	NA	86581432	86581238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_86581200_86581400
PB_novel_35857_0	chr6	+	175	1	Intergenic	novelGene_3094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACAAAAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	86723910	86724085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_86723900_86724100
PB_novel_35858_1	chr6	+	176	1	Intergenic	novelGene_3095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86760506	86760682	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_86760500_86760700
PB_novel_35863_0	chr6	-	177	1	Intergenic	novelGene_3096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATCCA	NA	False	NA	NA	False	NA	NA	NA	86919596	86919419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_86919400_86919600
PB_novel_35870_0	chr6	-	176	1	Intergenic	novelGene_3097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGTTTTTAAATAA	NA	False	NA	NA	False	NA	NA	NA	87090443	87090267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_87090300_87090400
PB_novel_35875_0	chr6	-	156	1	Intergenic	novelGene_3098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAATAATAAAAAAAAAAGT	6376	False	NA	NA	False	NA	NA	NA	87484782	87484626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_87484600_87484800
PB_novel_35883_0	chr6	+	175	1	Intergenic	novelGene_3099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAATAAAAAAAAAAAAAAA	1274	False	NA	NA	False	NA	NA	NA	87812248	87812423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_87812200_87812400
PB_novel_35885_0	chr6	-	168	1	Intergenic	novelGene_3100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACATCTTTAAAAACAAAACA	4422	False	NA	NA	False	NA	NA	NA	87847125	87846957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_87847000_87847100
PB_novel_35894_0	chr6	-	176	1	Intergenic	novelGene_3101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	7202	False	NA	NA	False	NA	NA	NA	87974435	87974259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_87974300_87974400
PB_novel_35897_0	chr6	-	166	1	Intergenic	novelGene_3102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAACACCCG	8376	False	NA	NA	False	NA	NA	NA	88005300	88005134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_88005100_88005300
PB_novel_35898_0	chr6	-	178	1	Intergenic	novelGene_3103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAAAGAAAATG	4799	False	NA	NA	False	NA	NA	NA	88008877	88008699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_88008700_88008900
PB_novel_35900_0	chr6	+	1634	1	Antisense	novelGene_ENSMUSG00000108268.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88016232	88017866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_+_88016200_88017900
PB_novel_35906_0	chr6	+	210	1	Intergenic	novelGene_3104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAGA	3316	False	NA	NA	False	NA	NA	NA	88051396	88051606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_88051400_88051600
PB_novel_35907_0	chr6	-	174	1	Intergenic	novelGene_3105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGAAAGAAAGAAGG	8540	False	NA	NA	False	NA	NA	NA	88066497	88066323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_88066300_88066500
PB_novel_35917_0	chr6	+	159	1	Intergenic	novelGene_3106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAAATATTTAAA	2499	False	NA	NA	False	NA	NA	NA	88224786	88224945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_88224800_88224900
PB_novel_35924_0	chr6	+	174	1	Intergenic	novelGene_3107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAATAAACAAAAAG	NA	False	NA	NA	False	NA	NA	NA	88415246	88415420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_88415200_88415400
PB_novel_35926_0	chr6	-	3669	1	Intergenic	novelGene_3108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	9455	False	NA	NA	False	NA	NA	NA	88455829	88452160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_88452200_88455800
PB_novel_35928_0	chr6	-	5044	1	NIC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-1	62	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	9208	False	NA	NA	False	NA	NA	NA	88495774	88490730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_-_88490700_88495800
PB_novel_35937_1	chr6	+	173	2	Intergenic	novelGene_3109	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	24	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	4195	False	NA	NA	False	NA	NA	NA	88839466	88924785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_88839537_88924682
PB_novel_35940_0	chr6	-	169	1	Intergenic	novelGene_3110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAGAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	88941768	88941599	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_88941600_88941800
PB_novel_35943_0	chr6	-	4032	1	Antisense	novelGene_ENSMUSG00000055403.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89077770	89073738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_89073700_89077800
PB_novel_35951_0	chr6	+	3331	1	NIC	ENSMUSG00000030087.12	novel	2373	3	NA	NA	4761	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAGAGGAAAAAAAA	NA	False	NA	-1	True	CATAAA	-19	NA	90448860	90452191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_90448900_90452200
PB_novel_35959_0	chr6	-	165	1	Intergenic	novelGene_3111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATGAATCTTAAAAAAAAAA	1261	False	NA	NA	False	NA	NA	NA	90763042	90762877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_90762900_90763000
PB_novel_35968_0	chr6	+	177	1	Intergenic	novelGene_3112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	91402834	91403011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_91402800_91403000
PB_novel_35971_0	chr6	-	171	1	Intergenic	novelGene_3113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAGAGAAAGAAAACAA	NA	False	NA	1	True	NA	NA	NA	91448522	91448351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_91448400_91448500
PB_novel_35973_0	chr6	+	174	1	Intergenic	novelGene_3114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	91618430	91618604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_91618400_91618600
PB_novel_35974_0	chr6	+	176	1	Intergenic	novelGene_3115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91641150	91641326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_91641200_91641300
PB_novel_35975_0	chr6	-	316	1	Intergenic	novelGene_3116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	91809554	91809238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_91809200_91809600
PB_novel_35976_0	chr6	-	177	1	Intergenic	novelGene_3117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	268	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	91852016	91851839	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_91851800_91852000
PB_novel_35986_0	chr6	-	174	1	Intergenic	novelGene_3118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAATATAGACATAAAG	NA	False	NA	NA	False	NA	NA	NA	92162214	92162040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_92162000_92162200
PB_novel_35994_1	chr6	+	177	1	Intergenic	novelGene_3119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93529368	93529545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_93529400_93529500
PB_novel_35997_0	chr6	+	163	1	Intergenic	novelGene_3120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATCATA	NA	False	NA	NA	False	NA	NA	NA	93980828	93980991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_93980800_93981000
PB_novel_36000_0	chr6	+	5945	1	Intergenic	novelGene_3121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGCAAAAAAAAAAAAAAAA	170	False	NA	NA	False	NA	NA	NA	94130823	94136768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_94130800_94136800
PB_novel_36001_0	chr6	+	166	1	Intergenic	novelGene_3122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	94165587	94165753	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_94165600_94165800
PB_novel_36004_0	chr6	+	2107	1	Intergenic	novelGene_3123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAGAAAAAAAAAAAAAAAAA	6430	False	NA	NA	False	NA	NA	NA	94228386	94230493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_94228400_94230500
PB_novel_36009_0	chr6	-	182	1	Intergenic	novelGene_3124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAAAGCATACAAC	NA	False	NA	NA	False	NA	NA	NA	94269964	94269782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_94269800_94270000
PB_novel_36034_0	chr6	+	1900	1	Intergenic	novelGene_3125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	97099370	97101270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_97099400_97101300
PB_novel_36036_0	chr6	+	5823	1	FSM	ENSMUSG00000107502.2	ENSMUST00000203184.2	3527	1	1020	-3316	1020	3316	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-28	NA	97126174	97131997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_97126200_97132000
PB_novel_36040_0	chr6	+	176	1	Intergenic	novelGene_3126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	97334511	97334687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_97334500_97334700
PB_novel_36041_0	chr6	-	177	1	Intergenic	novelGene_3127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	9524	False	NA	NA	False	NA	NA	NA	97344655	97344478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_97344500_97344700
PB_novel_36047_0	chr6	+	177	1	Intergenic	novelGene_3128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98890507	98890684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_98890500_98890700
PB_novel_36052_0	chr6	-	169	1	Intergenic	novelGene_3129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATTTTAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	99271067	99270898	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_99270900_99271100
PB_novel_36058_0	chr6	+	176	1	Intergenic	novelGene_3130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	99966381	99966557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_99966400_99966600
PB_novel_36059_0	chr6	+	172	1	Intergenic	novelGene_3131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TACAAACAAACAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	100109711	100109883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_100109700_100109900
PB_novel_36064_0	chr6	+	5792	1	Intergenic	novelGene_3132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100215314	100221106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_100215300_100221100
PB_novel_36087_0	chr6	-	177	1	Intergenic	novelGene_3133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAGTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	103758921	103758744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_103758700_103758900
PB_novel_36088_0	chr6	-	169	1	Intergenic	novelGene_3134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACCTTTAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	105126902	105126733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_105126700_105126900
PB_novel_36099_0	chr6	-	178	1	Intergenic	novelGene_3135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATGG	NA	False	NA	NA	False	NA	NA	NA	108148448	108148270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_108148300_108148400
PB_novel_36104_0	chr6	+	176	1	Intergenic	novelGene_3136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	108537833	108538009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_108537800_108538000
PB_novel_36112_0	chr6	+	175	1	Intergenic	novelGene_3137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAATAAAAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	109224394	109224569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_109224400_109224600
PB_novel_36130_0	chr6	+	5717	1	NIC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	4	1040	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113023321	113029038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113023300_113029000
PB_novel_36137_0	chr6	+	197	1	Intergenic	novelGene_3138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATCTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113198490	113198687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_113198500_113198700
PB_novel_36141_0	chr6	-	173	1	Intergenic	novelGene_3139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAATCTTA	2893	False	NA	NA	False	NA	NA	NA	113235645	113235472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_113235500_113235600
PB_novel_36147_0	chr6	+	177	1	Intergenic	novelGene_3140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATCTAAA	5803	False	NA	NA	False	NA	NA	NA	113313679	113313856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_113313700_113313900
PB_novel_36149_0	chr6	+	4291	1	NIC	ENSMUSG00000079426.14	novel	2270	6	NA	NA	-5	-6537	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113355148	113359439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_113355100_113359400
PB_novel_36156_0	chr6	-	186	1	Intergenic	novelGene_3141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAACTATTTAAAAA	7502	False	NA	NA	False	NA	NA	NA	113524119	113523933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_113523900_113524100
PB_novel_36165_0	chr6	+	185	1	Antisense	novelGene_ENSMUSG00000107846.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAGAGAGAAAAG	3066	False	NA	NA	False	NA	NA	NA	113653668	113653853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_+_113653700_113653900
PB_novel_36171_0	chr6	+	178	1	Intergenic	novelGene_3142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	114802249	114802427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_114802200_114802400
PB_novel_36173_0	chr6	-	177	1	Intergenic	novelGene_3143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114842225	114842048	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_114842000_114842200
PB_novel_36176_0	chr6	-	159	1	Intergenic	novelGene_3144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114899401	114899242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_114899200_114899400
PB_novel_36181_0	chr6	+	191	1	Intergenic	novelGene_3145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115471558	115471749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_115471600_115471700
PB_novel_36184_2	chr6	-	2453	2	Antisense	novelGene_ENSMUSG00000042389.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGTCAAAAAAAAAAAAAAAA	7293	False	NA	NA	False	NA	NA	NA	115529690	115527118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_115528951_115529069
PB_novel_36211_0	chr6	-	175	1	Intergenic	novelGene_3146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115824072	115823897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_115823900_115824100
PB_novel_36220_0	chr6	-	179	1	Intergenic	novelGene_3147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAATGTAAAA	9471	False	NA	NA	False	NA	NA	NA	116047417	116047238	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_116047200_116047400
PB_novel_36222_0	chr6	+	177	1	Intergenic	novelGene_3148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAACTATGG	7746	False	NA	NA	False	NA	NA	NA	116145183	116145360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_116145200_116145400
PB_novel_36223_0	chr6	+	833	1	FSM	ENSMUSG00000101878.2	ENSMUST00000173192.2	387	1	-75	-371	-75	371	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	116150622	116151455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_116150600_116151500
PB_novel_36226_0	chr6	-	1847	1	Genic_Genomic	ENSMUSG00000108030.2	novel	NA	NA	NA	NA	-5	-6744	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8504	False	NA	NA	False	NA	NA	NA	116184959	116183112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr6_-_116183100_116185000
PB_novel_36227_0	chr6	-	175	1	Intergenic	novelGene_3149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATCTAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	116200599	116200424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_116200400_116200600
PB_novel_36229_0	chr6	+	181	1	Intergenic	novelGene_3150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTT	5380	False	NA	NA	False	NA	NA	NA	116213870	116214051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_116213900_116214100
PB_novel_36237_0	chr6	-	168	1	Intergenic	novelGene_3151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTAAAATAAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	117270313	117270145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_117270100_117270300
PB_novel_36244_0	chr6	+	515	1	Intergenic	novelGene_3152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACCAAAAAAAAAAAAAAAA	359	False	NA	NA	False	NA	NA	NA	117841631	117842146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_117841600_117842100
PB_novel_36245_0	chr6	+	135	1	Intergenic	novelGene_3153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCCCCCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117854767	117854902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_117854800_117854900
PB_novel_36258_0	chr6	-	181	1	Intergenic	novelGene_3154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	117954202	117954021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_117954000_117954200
PB_novel_36261_0	chr6	-	176	1	Intergenic	novelGene_3155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATAAAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117986684	117986508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_117986500_117986700
PB_novel_36271_0	chr6	-	175	1	Intergenic	novelGene_3156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAACT	2519	False	NA	NA	False	NA	NA	NA	119118753	119118578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_119118600_119118800
PB_novel_36277_0	chr6	+	132	1	Intergenic	novelGene_3157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119430179	119430311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_119430200_119430300
PB_novel_36280_0	chr6	-	176	1	Intergenic	novelGene_3158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAGTGTCCAA	NA	False	NA	NA	False	NA	NA	NA	119559907	119559731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_119559700_119559900
PB_novel_36281_0	chr6	-	188	1	Intergenic	novelGene_3159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	119579444	119579256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_119579300_119579400
PB_novel_36284_0	chr6	+	4111	1	Intergenic	novelGene_3160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-39	NA	119765157	119769268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_119765200_119769300
PB_novel_36288_0	chr6	-	202	1	Intergenic	novelGene_3161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCCTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119829195	119828993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_119829000_119829200
PB_novel_36293_0	chr6	+	4605	1	Intergenic	novelGene_3162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119984427	119989032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_119984400_119989000
PB_novel_36294_0	chr6	+	178	1	Intergenic	novelGene_3163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAAAGACACTGT	NA	False	NA	NA	False	NA	NA	NA	120005423	120005601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_120005400_120005600
PB_novel_36297_0	chr6	+	150	1	Intergenic	novelGene_3164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	5691	False	NA	NA	False	NA	NA	NA	120045604	120045754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_120045600_120045800
PB_novel_36302_0	chr6	+	187	1	Intergenic	novelGene_3165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGAGCAT	9179	False	NA	NA	False	NA	NA	NA	120102554	120102741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_120102600_120102700
PB_novel_36303_0	chr6	-	159	1	Intergenic	novelGene_3166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	120142843	120142684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120142700_120142800
PB_novel_36312_0	chr6	+	181	1	Intergenic	novelGene_3167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAACAAGAAAAACCAGAG	NA	False	NA	NA	False	NA	NA	NA	120269260	120269441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_120269300_120269400
PB_novel_36319_0	chr6	+	194	1	Intergenic	novelGene_3168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	120328204	120328398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_120328200_120328400
PB_novel_36321_0	chr6	-	1712	1	Intergenic	novelGene_3169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120341010	120339298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120339300_120341000
PB_novel_36323_4	chr6	-	177	1	Intergenic	novelGene_3174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120534392	120534215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120534200_120534400
PB_novel_36324_0	chr6	-	174	1	Intergenic	novelGene_3170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATGT	9491	False	NA	NA	False	NA	NA	NA	120354868	120354694	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120354700_120354900
PB_novel_36327_0	chr6	-	176	1	Intergenic	novelGene_3171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAGTAAGGAACT	NA	False	NA	NA	False	NA	NA	NA	120369532	120369356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120369400_120369500
PB_novel_36330_0	chr6	-	174	1	Antisense	novelGene_ENSMUSG00000030180.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	120406929	120406755	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_120406800_120406900
PB_novel_36334_0	chr6	-	138	1	Intergenic	novelGene_3172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	120434461	120434323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120434300_120434500
PB_novel_36342_0	chr6	-	166	1	Intergenic	novelGene_3173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATG	9085	False	NA	NA	False	NA	NA	NA	120522223	120522057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120522100_120522200
PB_novel_36345_0	chr6	+	175	1	Intergenic	novelGene_3175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120571189	120571364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_120571200_120571400
PB_novel_36347_0	chr6	-	177	1	Intergenic	novelGene_3176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATAACT	NA	False	NA	NA	False	NA	NA	NA	120600004	120599827	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120599800_120600000
PB_novel_36352_0	chr6	-	153	1	Intergenic	novelGene_3177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	120660354	120660201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120660200_120660400
PB_novel_36355_0	chr6	-	1776	1	Antisense	novelGene_ENSMUSG00000071226.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACCAAAAACAAATAC	NA	False	NA	NA	False	NA	NA	NA	120713866	120712090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_120712100_120713900
PB_novel_36358_0	chr6	-	173	1	Intergenic	novelGene_3178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	120761060	120760887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120760900_120761100
PB_novel_36365_0	chr6	-	1423	1	Intergenic	novelGene_3179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	5833	False	NA	NA	False	NA	NA	NA	120816901	120815478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120815500_120816900
PB_novel_36369_0	chr6	-	176	1	Intergenic	novelGene_3180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTTATGATATTG	NA	False	NA	NA	False	NA	NA	NA	120830997	120830821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_120830800_120831000
PB_novel_36370_0	chr6	-	2259	1	Antisense	novelGene_ENSMUSG00000009112.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120849258	120846999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_120847000_120849300
PB_novel_36372_0	chr6	+	1455	1	FSM	ENSMUSG00000108125.2	ENSMUST00000204935.2	318	1	-560	-577	-560	577	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGATAACAAACT	NA	False	NA	NA	False	AGTAAA	-18	NA	120885073	120886528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_120885100_120886500
PB_novel_36373_0	chr6	+	174	1	Intergenic	novelGene_3181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTTATAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	120901818	120901992	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_120901800_120902000
PB_novel_36381_0	chr6	+	172	1	Intergenic	novelGene_3182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAGATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121149365	121149537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_121149400_121149500
PB_novel_36382_0	chr6	+	189	1	Antisense	novelGene_ENSMUSG00000107915.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAGCAAGCAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	121174343	121174532	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_+_121174300_121174500
PB_novel_36387_0	chr6	+	175	1	Intergenic	novelGene_3183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAACACACTCTACCGAA	NA	False	NA	NA	False	NA	NA	NA	122232236	122232411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_122232200_122232400
PB_novel_36410_0	chr6	-	156	1	Intergenic	novelGene_3184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATATAAAATAAAA	NA	False	NA	NA	False	AAAACA	-12	NA	122613230	122613074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_122613100_122613200
PB_novel_36414_0	chr6	-	167	1	Intergenic	novelGene_3185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAACAAAACCTGA	8568	False	NA	NA	False	NA	NA	NA	122649212	122649045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_122649000_122649200
PB_novel_36415_0	chr6	-	171	1	Intergenic	novelGene_3186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	7312	False	NA	NA	False	NA	NA	NA	122650468	122650297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_122650300_122650500
PB_novel_36416_0	chr6	+	172	1	Intergenic	novelGene_3187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAACAAAC	2565	False	NA	NA	False	NA	NA	NA	122657170	122657342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_122657200_122657300
PB_novel_36418_0	chr6	-	160	1	Intergenic	novelGene_3188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122658390	122658230	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_122658200_122658400
PB_novel_36419_0	chr6	+	170	1	Intergenic	novelGene_3189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	5700	False	NA	NA	False	NA	NA	NA	122660305	122660475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_122660300_122660500
PB_novel_36425_0	chr6	+	175	1	Intergenic	novelGene_3190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAGAAAAGACATAAACA	NA	False	NA	NA	False	NA	NA	NA	122678663	122678838	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_122678700_122678800
PB_novel_36426_0	chr6	+	3405	1	NIC	ENSMUSG00000012396.13	novel	1995	5	NA	NA	28	-3633	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	122684554	122687959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr6_+_122684600_122688000
PB_novel_36429_0	chr6	-	199	1	Intergenic	novelGene_3191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	122686539	122686340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_122686300_122686500
PB_novel_36431_1	chr6	-	175	1	Intergenic	novelGene_3193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	122710523	122710348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_122710300_122710500
PB_novel_36433_0	chr6	-	190	1	Intergenic	novelGene_3192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	651	False	NA	5	True	NA	NA	NA	122698413	122698223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_122698200_122698400
PB_novel_36441_0	chr6	-	173	1	Intergenic	novelGene_3194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAGTGAATGGATAA	3797	False	NA	NA	False	NA	NA	NA	122776171	122775998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_122776000_122776200
PB_novel_36444_0	chr6	-	175	1	Intergenic	novelGene_3195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGGGAAAAAAAAGGGAGAA	NA	False	NA	NA	False	NA	NA	NA	122786294	122786119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_122786100_122786300
PB_novel_36453_0	chr6	-	201	1	Intergenic	novelGene_3196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCTAAAAAAAAAAAAAAAAA	8865	False	NA	NA	False	NA	NA	NA	123253141	123252940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_123252900_123253100
PB_novel_36461_0	chr6	+	207	1	Intergenic	novelGene_3197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	7398	False	NA	NA	False	NA	NA	NA	124500574	124500781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_124500600_124500800
PB_novel_36468_0	chr6	+	333	1	Intergenic	novelGene_3198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAATTTAAAAAAATAAAT	362	False	NA	NA	False	NA	NA	NA	124663562	124663895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_124663600_124663900
PB_novel_36476_0	chr6	+	174	1	Intergenic	novelGene_3199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGTAG	NA	False	NA	NA	False	NA	NA	NA	124768357	124768531	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_124768400_124768500
PB_novel_36480_0	chr6	+	176	1	Intergenic	novelGene_3200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGGCAAGGGCAGAA	NA	False	NA	NA	False	NA	NA	NA	124780908	124781084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_124780900_124781100
PB_novel_36485_0	chr6	-	166	1	Intergenic	novelGene_3201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAACAAATAGTTT	NA	False	NA	NA	False	NA	NA	NA	124829837	124829671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_124829700_124829800
PB_novel_36494_0	chr6	+	175	1	Intergenic	novelGene_3202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAACTAGTCAG	NA	False	NA	NA	False	NA	NA	NA	124901229	124901404	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_124901200_124901400
PB_novel_36497_0	chr6	-	184	1	Intergenic	novelGene_3203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	3984	False	NA	NA	False	NA	NA	NA	124916122	124915938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_124915900_124916100
PB_novel_36498_0	chr6	-	136	1	Intergenic	novelGene_3204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAACCAAAAAA	2556	False	NA	NA	False	NA	NA	NA	124917550	124917414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_124917400_124917600
PB_novel_36501_0	chr6	+	146	1	Intergenic	novelGene_3205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	124985219	124985365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_124985200_124985400
PB_novel_36504_0	chr6	-	177	1	Antisense	novelGene_ENSMUSG00000030330.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125022568	125022391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_125022400_125022600
PB_novel_36506_2	chr6	-	177	1	Intergenic	novelGene_3206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	294	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7218	False	NA	NA	False	NA	NA	NA	125042632	125042455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_125042500_125042600
PB_novel_36513_0	chr6	-	176	1	Intergenic	novelGene_3207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACAAAAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125083279	125083103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_125083100_125083300
PB_novel_36516_0	chr6	-	173	1	Intergenic	novelGene_3208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAAAGAAAAAG	8648	False	NA	NA	False	NA	NA	NA	125160345	125160172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_125160200_125160300
PB_novel_36519_0	chr6	-	165	1	Intergenic	novelGene_3209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	4853	False	NA	NA	False	NA	NA	NA	125236817	125236652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_125236700_125236800
PB_novel_36520_0	chr6	-	282	1	Antisense	novelGene_ENSMUSG00000108129.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAATAAATAAAC	8337	False	NA	NA	False	NA	NA	NA	125245884	125245602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_125245600_125245900
PB_novel_36521_0	chr6	+	162	1	Intergenic	novelGene_3210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	125257134	125257296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_125257100_125257300
PB_novel_36523_0	chr6	+	175	1	Intergenic	novelGene_3211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	125306335	125306510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_125306300_125306500
PB_novel_36525_2	chr6	+	185	1	Intergenic	novelGene_3212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	125360621	125360806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_125360600_125360800
PB_novel_36528_0	chr6	+	237	1	Intergenic	novelGene_3213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTTAAAAAAAAAAGAAG	9053	False	NA	NA	False	AATAAA	-10	NA	125371012	125371249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_125371000_125371200
PB_novel_36530_0	chr6	+	204	1	Intergenic	novelGene_3214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGATATAATAAT	NA	False	NA	NA	False	NA	NA	NA	125376309	125376513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_125376300_125376500
PB_novel_36532_0	chr6	+	168	1	Intergenic	novelGene_3215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	324	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATGGA	NA	False	NA	21	True	NA	NA	NA	125389668	125389836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_125389700_125389800
PB_novel_36538_0	chr6	+	192	1	Intergenic	novelGene_3216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	125409057	125409249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_125409100_125409200
PB_novel_36540_0	chr6	+	176	1	Intergenic	novelGene_3217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGACTTATTT	762	False	NA	NA	False	NA	NA	NA	125433540	125433716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_125433500_125433700
PB_novel_36543_0	chr6	-	172	1	Intergenic	novelGene_3218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125519444	125519272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_125519300_125519400
PB_novel_36553_0	chr6	+	177	1	Intergenic	novelGene_3219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGACTTTTA	7700	False	NA	NA	False	NA	NA	NA	126947698	126947875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_126947700_126947900
PB_novel_36557_0	chr6	+	4353	1	Intergenic	novelGene_3220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7881	False	NA	NA	False	NA	NA	NA	127080787	127085140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_127080800_127085100
PB_novel_36564_0	chr6	+	181	1	Intergenic	novelGene_3221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAGTGAATAC	NA	False	NA	NA	False	NA	NA	NA	128184733	128184914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_128184700_128184900
PB_novel_36569_0	chr6	-	2936	1	Intergenic	novelGene_3222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9404	False	NA	NA	False	NA	NA	NA	128234086	128231150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128231200_128234100
PB_novel_36571_0	chr6	+	174	1	Intergenic	novelGene_3223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAATTAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	128287431	128287605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_128287400_128287600
PB_novel_36576_0	chr6	-	172	1	Intergenic	novelGene_3224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAAAAGAATGGC	NA	False	NA	NA	False	NA	NA	NA	128343897	128343725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128343700_128343900
PB_novel_36583_0	chr6	-	332	1	Intergenic	novelGene_3225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGTCTCGAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	128396305	128395973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128396000_128396300
PB_novel_36590_0	chr6	-	180	1	Intergenic	novelGene_3226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAATA	NA	False	NA	NA	False	NA	NA	NA	128444151	128443971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128444000_128444200
PB_novel_36592_0	chr6	+	153	1	Intergenic	novelGene_3227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	128457372	128457525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_128457400_128457500
PB_novel_36593_0	chr6	-	198	1	Intergenic	novelGene_3228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATTTAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	128460413	128460215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128460200_128460400
PB_novel_36594_0	chr6	-	176	1	Intergenic	novelGene_3229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGGAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	128461267	128461091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128461100_128461300
PB_novel_36601_0	chr6	-	176	1	Intergenic	novelGene_3230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	6687	False	NA	NA	False	NA	NA	NA	128507152	128506976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128507000_128507200
PB_novel_36603_0	chr6	+	169	1	Intergenic	novelGene_3231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAAAAAAAGAAATT	NA	False	NA	NA	False	NA	NA	NA	128588996	128589165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_128589000_128589200
PB_novel_36604_0	chr6	-	191	1	Intergenic	novelGene_3232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAAAAGTACAAAGAAAA	1016	False	NA	NA	False	NA	NA	NA	128599049	128598858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128598900_128599000
PB_novel_36605_0	chr6	+	2221	1	FSM	ENSMUSG00000037827.6	ENSMUST00000036712.6	1479	1	-52	-690	-52	690	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGTAGAAAACCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128621823	128624044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr6_+_128621800_128624000
PB_novel_36606_0	chr6	-	173	1	Intergenic	novelGene_3233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128697399	128697226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128697200_128697400
PB_novel_36607_0	chr6	+	174	1	Intergenic	novelGene_3234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	128702726	128702900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_128702700_128702900
PB_novel_36608_0	chr6	-	153	1	Intergenic	novelGene_3235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGGAAGAATAGAAA	NA	False	NA	NA	False	ATTAAA	-13	NA	128737137	128736984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128737000_128737100
PB_novel_36610_0	chr6	-	167	1	Intergenic	novelGene_3236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GATTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-18	NA	128775921	128775754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128775800_128775900
PB_novel_36612_0	chr6	+	178	1	Intergenic	novelGene_3237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGGAAAACAATGATTTA	NA	False	NA	NA	False	GATAAA	-35	NA	128816012	128816190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_128816000_128816200
PB_novel_36613_0	chr6	-	172	1	Intergenic	novelGene_3238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	239	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	3199	False	NA	NA	False	NA	NA	NA	128823104	128822932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128822900_128823100
PB_novel_36614_0	chr6	-	311	1	Intergenic	novelGene_3239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACCAAAAAAAGAA	5602	False	NA	NA	False	NA	NA	NA	128834033	128833722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_128833700_128834000
PB_novel_36617_0	chr6	-	176	1	Intergenic	novelGene_3240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAAACAGA	NA	False	NA	NA	False	NA	NA	NA	129571629	129571453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_129571500_129571600
PB_novel_36622_0	chr6	-	175	1	Intergenic	novelGene_3241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	131403828	131403653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_131403700_131403800
PB_novel_36623_0	chr6	-	173	1	Intergenic	novelGene_3242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATTAAAAAAAAATTATCCA	NA	False	NA	NA	False	NA	NA	NA	131428996	131428823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_131428800_131429000
PB_novel_36629_0	chr6	-	172	1	Intergenic	novelGene_3243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATAAATAAAACTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	133195750	133195578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_133195600_133195800
PB_novel_36633_0	chr6	-	175	1	Intergenic	novelGene_3244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGCTC	NA	False	NA	NA	False	NA	NA	NA	134274229	134274054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_134274100_134274200
PB_novel_36635_0	chr6	+	147	1	Intergenic	novelGene_3245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134310058	134310205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_134310100_134310200
PB_novel_36638_0	chr6	+	169	1	Intergenic	novelGene_3246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATAGATAGATAA	NA	False	NA	NA	False	NA	NA	NA	134362571	134362740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_134362600_134362700
PB_novel_36640_0	chr6	+	1390	1	Intergenic	novelGene_3247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATCAAATAAAAAAAA	6827	False	NA	NA	False	NA	NA	NA	134421328	134422718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_134421300_134422700
PB_novel_36642_0	chr6	-	176	1	Intergenic	novelGene_3248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAAAATCACTGCTTT	NA	False	NA	NA	False	NA	NA	NA	134524882	134524706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_134524700_134524900
PB_novel_36644_0	chr6	+	174	1	Intergenic	novelGene_3249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	309	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	134571186	134571360	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_134571200_134571400
PB_novel_36647_0	chr6	-	185	1	Intergenic	novelGene_3250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	134617722	134617537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_134617500_134617700
PB_novel_36652_0	chr6	-	175	1	Intergenic	novelGene_3251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	134675207	134675032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_134675000_134675200
PB_novel_36653_0	chr6	-	180	1	Intergenic	novelGene_3252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAAGGTGCT	NA	False	NA	NA	False	NA	NA	NA	134726028	134725848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_134725800_134726000
PB_novel_36655_0	chr6	+	174	1	Intergenic	novelGene_3253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	134736619	134736793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_134736600_134736800
PB_novel_36657_0	chr6	+	2821	1	Intergenic	novelGene_3254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	134761637	134764458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_134761600_134764500
PB_novel_36658_0	chr6	+	176	1	Intergenic	novelGene_3255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATCTTTGTTTAAA	NA	False	NA	NA	False	NA	NA	NA	134788511	134788687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_134788500_134788700
PB_novel_36664_0	chr6	-	177	1	Intergenic	novelGene_3256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACCTAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	134853395	134853218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_134853200_134853400
PB_novel_36680_0	chr6	-	190	1	Intergenic	novelGene_3257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTTGTAAAAAGGTAAGAAG	7889	False	NA	NA	False	NA	NA	NA	135246454	135246264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_135246300_135246500
PB_novel_36681_0	chr6	-	154	1	Intergenic	novelGene_3258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	135855647	135855493	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_135855500_135855600
PB_novel_36683_0	chr6	+	176	1	Intergenic	novelGene_3259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	136343649	136343825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_136343600_136343800
PB_novel_36701_0	chr6	+	187	1	Intergenic	novelGene_3260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAATCTACTTAGTT	307	False	NA	NA	False	NA	NA	NA	136954832	136955019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_136954800_136955000
PB_novel_36710_0	chr6	+	173	1	Intergenic	novelGene_3261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATTGTTAGA	NA	False	NA	NA	False	NA	NA	NA	137640401	137640574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_137640400_137640600
PB_novel_36713_1	chr6	-	162	2	Intergenic	novelGene_3262	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAAATAAAAAAGAATTTA	NA	False	NA	NA	False	NA	NA	NA	138093187	137932830	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_137932955_138093149
PB_novel_36719_0	chr6	+	171	1	Intergenic	novelGene_3263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGTAAAAAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	140309247	140309418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_140309200_140309400
PB_novel_36723_0	chr6	+	215	1	Intergenic	novelGene_3264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CACACTTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140475354	140475569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_140475400_140475600
PB_novel_36731_0	chr6	-	170	1	Intergenic	novelGene_3265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAATTAAAAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	140587442	140587272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_140587300_140587400
PB_novel_36734_0	chr6	+	165	1	Intergenic	novelGene_3266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATACAACAGAATA	2543	False	NA	NA	False	NA	NA	NA	140627301	140627466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_140627300_140627500
PB_novel_36748_0	chr6	+	172	1	Intergenic	novelGene_3267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	142953969	142954141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_142954000_142954100
PB_novel_36749_0	chr6	-	177	1	Intergenic	novelGene_3268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	320	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	142969070	142968893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_142968900_142969100
PB_novel_36758_0	chr6	-	176	1	Intergenic	novelGene_3269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGTTGCC	NA	False	NA	NA	False	NA	NA	NA	143147921	143147745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_143147700_143147900
PB_novel_36761_0	chr6	+	184	1	Intergenic	novelGene_3270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTTTTTTAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	144301074	144301258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_144301100_144301300
PB_novel_36767_1	chr6	-	3231	2	Intergenic	novelGene_3271	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	145012397	145008943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_145009642_145009864
PB_novel_36776_0	chr6	+	173	1	Intergenic	novelGene_3272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	145203735	145203908	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_145203700_145203900
PB_novel_36780_0	chr6	+	3004	1	Antisense	novelGene_ENSMUSG00000030256.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	145804740	145807744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_+_145804700_145807700
PB_novel_36796_0	chr6	+	181	1	Intergenic	novelGene_3273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGATAGCAAAAAC	5499	False	NA	NA	False	NA	NA	NA	146938950	146939131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_146939000_146939100
PB_novel_36802_0	chr6	-	176	1	Intergenic	novelGene_3274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	147569452	147569276	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_147569300_147569500
PB_novel_36803_0	chr6	+	210	1	Intergenic	novelGene_3275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATACCA	NA	False	NA	NA	False	NA	NA	NA	147651809	147652019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_147651800_147652000
PB_novel_36813_0	chr6	-	172	1	Intergenic	novelGene_3282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	148854362	148854190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_148854200_148854400
PB_novel_36815_0	chr6	+	181	1	Intergenic	novelGene_3276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	148748729	148748910	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_148748700_148748900
PB_novel_36817_0	chr6	+	150	2	Intergenic	novelGene_3277	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	148785521	148906022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_148785567_148905917
PB_novel_36821_0	chr6	-	176	1	Intergenic	novelGene_3278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGAGAGAGAATT	1625	False	NA	NA	False	NA	NA	NA	148813303	148813127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_148813100_148813300
PB_novel_36824_0	chr6	-	186	1	Intergenic	novelGene_3279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAATAAATAAATAT	5432	False	NA	NA	False	NA	NA	NA	148826039	148825853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_148825900_148826000
PB_novel_36825_0	chr6	+	185	1	Intergenic	novelGene_3280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATAAATAAAATCT	NA	False	NA	NA	False	NA	NA	NA	148830834	148831019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_148830800_148831000
PB_novel_36827_0	chr6	+	187	1	Intergenic	novelGene_3281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	286	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	148849658	148849845	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_148849700_148849800
PB_novel_36829_0	chr6	+	128	1	Antisense	novelGene_ENSMUSG00000039985.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	2497	False	NA	NA	False	NA	NA	NA	148834048	148834176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_+_148834000_148834200
PB_novel_36832_0	chr6	-	176	1	Intergenic	novelGene_3283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	148863903	148863727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_148863700_148863900
PB_novel_36834_2	chr6	+	172	1	Intergenic	novelGene_3284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	148870118	148870290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_148870100_148870300
PB_novel_36837_0	chr6	+	153	1	Intergenic	novelGene_3285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAATTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	148880605	148880758	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_148880600_148880800
PB_novel_36838_0	chr6	-	199	1	Intergenic	novelGene_3286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGACTCATAAA	NA	False	NA	NA	False	NA	NA	NA	148882471	148882272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_148882300_148882500
PB_novel_36839_0	chr6	-	176	1	Intergenic	novelGene_3287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	148882957	148882781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_148882800_148883000
PB_novel_36840_0	chr6	-	171	1	Intergenic	novelGene_3288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAATAAAATGCATAG	5388	False	NA	NA	False	NA	NA	NA	148895781	148895610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_148895600_148895800
PB_novel_36844_0	chr6	-	166	1	Intergenic	novelGene_3289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACAGAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	148927978	148927812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_148927800_148928000
PB_novel_36855_0	chr6	+	165	1	Intergenic	novelGene_3290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAAATAAATAAT	NA	False	NA	NA	False	NA	NA	NA	149012572	149012737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_149012600_149012700
PB_novel_36857_0	chr6	-	1220	1	Antisense	novelGene_ENSMUSG00000039958.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	149048829	149047609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr6_-_149047600_149048800
PB_novel_36858_0	chr6	-	173	1	Intergenic	novelGene_3291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGTAAAAA	NA	False	NA	NA	False	NA	NA	NA	149050037	149049864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_149049900_149050000
PB_novel_36873_0	chr6	+	175	1	Intergenic	novelGene_3292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149279495	149279670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_149279500_149279700
PB_novel_36878_0	chr6	+	163	1	Intergenic	novelGene_3293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACAATTGAAGCACAG	NA	False	NA	NA	False	NA	NA	NA	149322560	149322723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_149322600_149322700
PB_novel_36881_0	chr6	-	177	1	Intergenic	novelGene_3294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149421502	149421325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_149421300_149421500
PB_novel_36886_0	chr6	+	176	1	Intergenic	novelGene_3295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATTT	NA	False	NA	NA	False	NA	NA	NA	149454253	149454429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_+_149454300_149454400
PB_novel_36891_0	chr7	+	181	1	Intergenic	novelGene_3721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAGCA	3126	False	NA	NA	False	NA	NA	NA	3210218	3210399	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_3210200_3210400
PB_novel_36893_0	chr7	-	176	1	Intergenic	novelGene_3723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	3234067	3233891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3233900_3234100
PB_novel_36895_0	chr7	-	136	1	Intergenic	novelGene_3724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCGAAAAAAAAAAA	7988	False	NA	NA	False	NA	NA	NA	3241772	3241636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3241600_3241800
PB_novel_36900_0	chr7	-	176	1	Intergenic	novelGene_3725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	3256738	3256562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3256600_3256700
PB_novel_36906_0	chr7	-	174	1	Intergenic	novelGene_3726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	3273561	3273387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3273400_3273600
PB_novel_36910_0	chr7	-	180	1	Intergenic	novelGene_3727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAACAAAACAATCC	4660	False	NA	NA	False	NA	NA	NA	3285483	3285303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3285300_3285500
PB_novel_36912_0	chr7	+	174	1	Intergenic	novelGene_3728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTTTTTTAATTTAA	249	False	NA	NA	False	NA	NA	NA	3293409	3293583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_3293400_3293600
PB_novel_36916_1	chr7	+	176	1	Intergenic	novelGene_3729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATTG	887	False	NA	NA	False	NA	NA	NA	3304591	3304767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_3304600_3304800
PB_novel_36923_0	chr7	+	204	1	Intergenic	novelGene_3730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATATATATTTATAAAT	NA	False	NA	NA	False	NA	NA	NA	3327543	3327747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_3327500_3327700
PB_novel_36927_0	chr7	-	171	1	Intergenic	novelGene_3731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAATATG	NA	False	NA	NA	False	NA	NA	NA	3408134	3407963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3408000_3408100
PB_novel_36932_0	chr7	-	183	1	Intergenic	novelGene_3732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATCTACT	NA	False	NA	NA	False	NA	NA	NA	3424709	3424526	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3424500_3424700
PB_novel_36933_0	chr7	-	171	1	Intergenic	novelGene_3733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	3429833	3429662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3429700_3429800
PB_novel_36935_0	chr7	-	171	1	Intergenic	novelGene_3734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3454288	3454117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3454100_3454300
PB_novel_36938_0	chr7	+	161	1	Intergenic	novelGene_3735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAATAAATCTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3474854	3475015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_3474900_3475000
PB_novel_36940_0	chr7	-	184	1	Intergenic	novelGene_3736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAATAAGAGAGCAG	NA	False	NA	NA	False	NA	NA	NA	3522262	3522078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3522100_3522300
PB_novel_36943_0	chr7	+	174	1	Intergenic	novelGene_3737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACAGGGACACAA	NA	False	NA	NA	False	NA	NA	NA	3540935	3541109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_3540900_3541100
PB_novel_36947_0	chr7	+	173	1	Intergenic	novelGene_3738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3281	False	NA	NA	False	NA	NA	NA	3574245	3574418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_3574200_3574400
PB_novel_36950_0	chr7	-	174	1	Intergenic	novelGene_3739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAACAAAACTAAACT	NA	False	NA	NA	False	NA	NA	NA	3595851	3595677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3595700_3595900
PB_novel_36955_0	chr7	+	177	1	Intergenic	novelGene_3740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAAAGAAATGT	7393	False	NA	NA	False	NA	NA	NA	3637443	3637620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_3637400_3637600
PB_novel_36957_0	chr7	-	967	1	NIC	ENSMUSG00000078813.4	novel	2222	4	NA	NA	187	-4589	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGCC	8890	False	NA	NA	False	NA	NA	NA	3668652	3667685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_3667700_3668700
PB_novel_36962_0	chr7	-	175	1	Intergenic	novelGene_3741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGAGAAAGAAATAGA	1575	False	NA	NA	False	NA	NA	NA	3691991	3691816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3691800_3692000
PB_novel_36967_0	chr7	-	167	1	Intergenic	novelGene_3742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	3746562	3746395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3746400_3746600
PB_novel_36968_0	chr7	-	168	1	Intergenic	novelGene_3743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	3851716	3851548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_3851500_3851700
PB_novel_36972_0	chr7	+	173	1	Intergenic	novelGene_3744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAGCAGCTAAAAAA	NA	False	NA	3	True	NA	NA	NA	4164815	4164988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_4164800_4165000
PB_novel_36975_0	chr7	-	176	1	Intergenic	novelGene_3745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAATAAAGGGAGAA	NA	False	NA	NA	False	NA	NA	NA	4212576	4212400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_4212400_4212600
PB_novel_36976_0	chr7	+	175	1	Intergenic	novelGene_3746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4223582	4223757	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_4223600_4223800
PB_novel_36983_0	chr7	+	2143	2	Antisense	novelGene_ENSMUSG00000008435.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	4438670	4441065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_4440412_4440663
PB_novel_36984_0	chr7	+	189	1	Intergenic	novelGene_3747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAACCA	NA	False	NA	NA	False	NA	NA	NA	4440415	4440604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_4440400_4440600
PB_novel_36986_0	chr7	-	160	1	Intergenic	novelGene_3748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAATAAATAAAAAAA	7478	False	NA	NA	False	NA	NA	NA	4520677	4520517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_4520500_4520700
PB_novel_36987_0	chr7	+	175	1	Intergenic	novelGene_3749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	4628614	4628789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_4628600_4628800
PB_novel_36989_0	chr7	-	166	1	Intergenic	novelGene_3750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTAAAAAACCAA	1345	False	NA	NA	False	NA	NA	NA	4634032	4633866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_4633900_4634000
PB_novel_36994_0	chr7	-	178	1	Intergenic	novelGene_3751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATAAAGTGGC	9945	False	NA	NA	False	NA	NA	NA	4714583	4714405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_4714400_4714600
PB_novel_36995_0	chr7	+	173	1	Intergenic	novelGene_3752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAATATTT	NA	False	NA	NA	False	NA	NA	NA	4721533	4721706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_4721500_4721700
PB_novel_36997_0	chr7	+	170	1	Intergenic	novelGene_3753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	4729638	4729808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_4729600_4729800
PB_novel_36998_2	chr7	+	163	1	Intergenic	novelGene_3759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAATCTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4906989	4907152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_4907000_4907200
PB_novel_36999_0	chr7	+	174	1	Intergenic	novelGene_3754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACCCAACAAC	171	False	NA	NA	False	NA	NA	NA	4741149	4741323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_4741100_4741300
PB_novel_37008_1	chr7	+	180	1	Intergenic	novelGene_3755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	6094	False	NA	NA	False	NA	NA	NA	4819077	4819257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_4819100_4819300
PB_novel_37009_0	chr7	+	179	1	Intergenic	novelGene_3756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGGAAGAAAGAAAGAAAG	8861	False	NA	NA	False	NA	NA	NA	4821844	4822023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_4821800_4822000
PB_novel_37012_0	chr7	+	179	1	Intergenic	novelGene_3757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAGAAGTTA	NA	False	NA	NA	False	NA	NA	NA	4864137	4864316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_4864100_4864300
PB_novel_37014_0	chr7	-	175	1	Intergenic	novelGene_3758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	400	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATATTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4887779	4887604	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_4887600_4887800
PB_novel_37019_0	chr7	+	182	1	Intergenic	novelGene_3760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5000221	5000403	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_5000200_5000400
PB_novel_37021_0	chr7	+	3219	1	NIC	ENSMUSG00000109129.2	novel	1003	3	NA	NA	1203	-13180	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTCTCGAAAAACCAAAAAA	4169	False	NA	NA	False	NA	NA	NA	5019697	5022916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_5019700_5022900
PB_novel_37027_1	chr7	-	2720	3	Antisense	novelGene_ENSMUSG00000030435.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTAAAAAAGCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5071850	5068075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_5069536_5070206_5070644_5071027
PB_novel_37027_10	chr7	-	2518	4	Antisense	novelGene_ENSMUSG00000030435.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTAAAAAAGCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5071937	5068075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_5069536_5070206_5070254_5070542_5070644_5071027
PB_novel_37027_17	chr7	-	2348	5	Antisense	novelGene_ENSMUSG00000030435.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTAAAAAAGCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5072316	5068075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_5069536_5070206_5070254_5070542_5070644_5071027_5071181_5071729
PB_novel_37028_0	chr7	-	4584	1	Antisense	novelGene_ENSMUSG00000035203.17_AS_novelGene_ENSMUSG00000030435.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5083667	5079083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_5079100_5083700
PB_novel_37029_0	chr7	-	4178	1	Antisense	novelGene_ENSMUSG00000035203.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAGAAAACAGAACAACAA	NA	False	NA	NA	False	AAAACA	-36	NA	5096311	5092133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_5092100_5096300
PB_novel_37036_0	chr7	-	3124	1	FSM	ENSMUSG00000108894.2	ENSMUST00000207700.2	164	1	-292	-2668	-292	2668	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	9855	False	NA	NA	False	NA	NA	NA	6158741	6155617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_6155600_6158700
PB_novel_37039_0	chr7	+	180	1	Intergenic	novelGene_3761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGGAA	4908	False	NA	NA	False	NA	NA	NA	6177452	6177632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_6177500_6177600
PB_novel_37044_0	chr7	-	177	1	Intergenic	novelGene_3762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAGAGAGAAAGA	NA	False	NA	-9	True	NA	NA	NA	6209578	6209401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_6209400_6209600
PB_novel_37048_0	chr7	-	175	1	Intergenic	novelGene_3763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAAAACAAAGT	NA	False	NA	NA	False	NA	NA	NA	6265117	6264942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_6264900_6265100
PB_novel_37053_0	chr7	-	174	1	Intergenic	novelGene_3764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	364	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6314128	6313954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_6314000_6314100
PB_novel_37058_0	chr7	-	172	1	Intergenic	novelGene_3765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	6372383	6372211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_6372200_6372400
PB_novel_37062_0	chr7	+	6413	1	Intergenic	novelGene_3766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6593973	6600386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_6594000_6600400
PB_novel_37065_0	chr7	+	174	1	Intergenic	novelGene_3767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAGCAAACAAACTT	4288	False	NA	NA	False	NA	NA	NA	6956505	6956679	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_6956500_6956700
PB_novel_37066_0	chr7	+	200	1	Intergenic	novelGene_3768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAGTTAAAAAAAAAAAAG	1828	False	NA	NA	False	NA	NA	NA	6978918	6979118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_6978900_6979100
PB_novel_37073_0	chr7	+	178	1	Intergenic	novelGene_3769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9872458	9872636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_9872500_9872600
PB_novel_37082_0	chr7	-	176	1	Intergenic	novelGene_3770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11109194	11109018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_11109000_11109200
PB_novel_37086_0	chr7	+	175	1	Intergenic	novelGene_3771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGATTTTGGAG	NA	False	NA	NA	False	NA	NA	NA	11859977	11860152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_11860000_11860200
PB_novel_37088_0	chr7	-	188	1	Intergenic	novelGene_3772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACACCATTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12177325	12177137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_12177100_12177300
PB_novel_37091_0	chr7	-	168	1	Intergenic	novelGene_3773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTCTTTAAAAAAAAAAGAAA	4201	False	NA	NA	False	NA	NA	NA	12284990	12284822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_12284800_12285000
PB_novel_37092_0	chr7	+	176	1	Intergenic	novelGene_3774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGATTCC	NA	False	NA	NA	False	NA	NA	NA	12456040	12456216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_12456000_12456200
PB_novel_37094_1	chr7	+	173	1	Intergenic	novelGene_3775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12549583	12549756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_12549600_12549800
PB_novel_37096_0	chr7	+	169	2	Intergenic	novelGene_3777	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12549583	12687980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_12549647_12687874
PB_novel_37096_1	chr7	+	158	2	Intergenic	novelGene_3776	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAAATAAATAGATCTTTA	NA	False	NA	NA	False	NA	NA	NA	12549583	12687969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_12549634_12687861
PB_novel_37100_0	chr7	+	170	1	Intergenic	novelGene_3778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAATGTATCTAAT	6426	False	NA	NA	False	NA	NA	NA	12610153	12610323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_12610200_12610300
PB_novel_37110_0	chr7	+	175	1	Intergenic	novelGene_3779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATCTTTAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	12687806	12687981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_12687800_12688000
PB_novel_37111_0	chr7	-	203	1	Intergenic	novelGene_3780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAGCAGACAAAATTT	NA	False	NA	NA	False	NA	NA	NA	12690063	12689860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_12689900_12690100
PB_novel_37112_0	chr7	+	173	1	Intergenic	novelGene_3781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAATGCTAATGGAAA	NA	False	NA	NA	False	NA	NA	NA	12693882	12694055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_12693900_12694100
PB_novel_37114_1	chr7	+	176	1	Intergenic	novelGene_3782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	12720295	12720471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_12720300_12720500
PB_novel_37119_0	chr7	-	157	1	Intergenic	novelGene_3783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAATAAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	12749841	12749684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_12749700_12749800
PB_novel_37120_0	chr7	-	171	1	Intergenic	novelGene_3784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	12750234	12750063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_12750100_12750200
PB_novel_37124_0	chr7	-	176	1	Intergenic	novelGene_3785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	13110398	13110222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_13110200_13110400
PB_novel_37138_0	chr7	-	174	1	Intergenic	novelGene_3786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATCCCAACCCAAT	NA	False	NA	NA	False	NA	NA	NA	15366433	15366259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_15366300_15366400
PB_novel_37143_0	chr7	-	207	1	Intergenic	novelGene_3787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15595043	15594836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_15594800_15595000
PB_novel_37145_0	chr7	+	173	1	Intergenic	novelGene_3788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAATAAAATAAAAC	NA	False	NA	NA	False	NA	NA	NA	15622499	15622672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_15622500_15622700
PB_novel_37147_0	chr7	+	177	1	Intergenic	novelGene_3789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	15647804	15647981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_15647800_15648000
PB_novel_37157_0	chr7	+	176	1	Intergenic	novelGene_3790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	15983344	15983520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_15983300_15983500
PB_novel_37159_0	chr7	+	180	1	Intergenic	novelGene_3791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAACAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	15990095	15990275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_15990100_15990300
PB_novel_37160_0	chr7	+	151	1	Intergenic	novelGene_3792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	15999249	15999400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_15999200_15999400
PB_novel_37162_0	chr7	+	176	1	Intergenic	novelGene_3793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	16024464	16024640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_16024500_16024600
PB_novel_37166_0	chr7	-	179	1	Intergenic	novelGene_3794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCACTCG	NA	False	NA	NA	False	NA	NA	NA	16079144	16078965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_16079000_16079100
PB_novel_37169_0	chr7	-	168	1	Intergenic	novelGene_3795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16084798	16084630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_16084600_16084800
PB_novel_37175_0	chr7	+	142	1	Intergenic	novelGene_3796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAACAGAGT	3121	False	NA	NA	False	NA	NA	NA	16123008	16123150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_16123000_16123200
PB_novel_37182_2	chr7	+	3771	1	FSM	ENSMUSG00000099423.2	ENSMUST00000189720.2	798	1	-2177	-796	-2177	796	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16230479	16234250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_16230500_16234200
PB_novel_37196_0	chr7	-	180	1	Intergenic	novelGene_3798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTTTAAAAAAACAAAAAAA	8849	False	NA	NA	False	NA	NA	NA	16491479	16491299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_16491300_16491500
PB_novel_37199_0	chr7	+	4101	1	NIC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	3	-1697	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	16515295	16519396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_16515300_16519400
PB_novel_37210_0	chr7	-	180	1	Intergenic	novelGene_3799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATAAATATTTTTTTA	7875	False	NA	NA	False	NA	NA	NA	16667745	16667565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_16667600_16667700
PB_novel_37212_0	chr7	-	176	1	Intergenic	novelGene_3800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16700921	16700745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_16700700_16700900
PB_novel_37221_1	chr7	-	159	1	Intergenic	novelGene_3801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATGTTGCAAGCTA	7324	False	NA	NA	False	AATAAA	-9	NA	18649400	18649241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_18649200_18649400
PB_novel_37222_0	chr7	+	180	1	Intergenic	novelGene_3802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGAACACACAACT	2358	False	NA	NA	False	NA	NA	NA	18649441	18649621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_18649400_18649600
PB_novel_37225_1	chr7	+	176	1	Intergenic	novelGene_3803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATAAATAAAATAA	5064	False	NA	NA	False	NA	NA	NA	18732096	18732272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_18732100_18732300
PB_novel_37226_1	chr7	+	206	1	Intergenic	novelGene_3804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	18737481	18737687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_18737500_18737700
PB_novel_37227_0	chr7	+	175	1	Intergenic	novelGene_3805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	275	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18805914	18806089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_18805900_18806100
PB_novel_37236_6	chr7	-	176	1	Intergenic	novelGene_3806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	315	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2174	False	NA	NA	False	NA	NA	NA	18923607	18923431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_18923400_18923600
PB_novel_37248_0	chr7	-	180	1	Intergenic	novelGene_3807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAGTTATT	NA	False	NA	NA	False	NA	NA	NA	19100202	19100022	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_19100000_19100200
PB_novel_37252_0	chr7	+	176	1	Intergenic	novelGene_3808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1717	False	NA	NA	False	NA	NA	NA	19214296	19214472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_19214300_19214500
PB_novel_37253_0	chr7	-	172	1	Intergenic	novelGene_3809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAACAAA	908	False	NA	NA	False	NA	NA	NA	19227081	19226909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_19226900_19227100
PB_novel_37265_0	chr7	-	140	1	Intergenic	novelGene_3810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAACAAAACA	4728	False	NA	NA	False	NA	NA	NA	19354754	19354614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_19354600_19354800
PB_novel_37267_0	chr7	-	152	1	Intergenic	novelGene_3811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATAATCAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	19376406	19376254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_19376300_19376400
PB_novel_37275_0	chr7	-	175	1	Intergenic	novelGene_3812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	19440188	19440013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_19440000_19440200
PB_novel_37277_0	chr7	+	173	1	Intergenic	novelGene_3813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAACAAAAAA	9200	False	NA	NA	False	NA	NA	NA	19472500	19472673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_19472500_19472700
PB_novel_37279_0	chr7	+	171	1	Intergenic	novelGene_3814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAACAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	19487327	19487498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_19487300_19487500
PB_novel_37283_0	chr7	+	169	1	Intergenic	novelGene_3815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATATTAAAAAAAAAAAAAA	2706	False	NA	NA	False	NA	NA	NA	19520611	19520780	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_19520600_19520800
PB_novel_37295_0	chr7	+	162	1	Intergenic	novelGene_3816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAATTAAAAAAAAAAAAAAA	2286	False	NA	NA	False	NA	NA	NA	19667751	19667913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_19667800_19667900
PB_novel_37300_0	chr7	+	172	1	Intergenic	novelGene_3817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTACAGCAGAGA	NA	False	NA	NA	False	NA	NA	NA	21256899	21257071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_21256900_21257100
PB_novel_37306_0	chr7	+	173	1	Intergenic	novelGene_3818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTACAGCAGAGA	NA	False	NA	NA	False	NA	NA	NA	22927955	22928128	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_22928000_22928100
PB_novel_37321_0	chr7	-	175	1	Intergenic	novelGene_3819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CACACAAATACATAAATTAA	NA	False	NA	NA	False	NA	NA	NA	24111111	24110936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_24110900_24111100
PB_novel_37323_0	chr7	+	176	1	Intergenic	novelGene_3820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24162888	24163064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_24162900_24163100
PB_novel_37327_0	chr7	-	1693	1	Intergenic	novelGene_3821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	GGGGCT	-23	NA	24208820	24207127	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_24207100_24208800
PB_novel_37329_0	chr7	+	167	1	Intergenic	novelGene_3822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAACAAGAT	NA	False	NA	NA	False	NA	NA	NA	24239643	24239810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_24239600_24239800
PB_novel_37335_0	chr7	-	165	1	Intergenic	novelGene_3823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAAAGAG	3128	False	NA	NA	False	NA	NA	NA	24313496	24313331	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_24313300_24313500
PB_novel_37339_0	chr7	-	176	1	Intergenic	novelGene_3824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	159	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	24479779	24479603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_24479600_24479800
PB_novel_37342_1	chr7	+	176	1	Intergenic	novelGene_3825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAATTAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	24565755	24565931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_24565800_24565900
PB_novel_37343_0	chr7	-	176	1	Intergenic	novelGene_3826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	24614824	24614648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_24614600_24614800
PB_novel_37344_0	chr7	-	158	1	Intergenic	novelGene_3827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24620163	24620005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_24620000_24620200
PB_novel_37346_0	chr7	-	158	1	Intergenic	novelGene_3828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATAAACAAA	NA	False	NA	NA	False	NA	NA	NA	24658885	24658727	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_24658700_24658900
PB_novel_37347_0	chr7	+	172	1	Intergenic	novelGene_3829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	24675401	24675573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_24675400_24675600
PB_novel_37353_0	chr7	-	176	1	Intergenic	novelGene_3830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9935	False	NA	NA	False	NA	NA	NA	24859808	24859632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_24859600_24859800
PB_novel_37354_0	chr7	+	180	1	Intergenic	novelGene_3831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAAGTAAACAAA	582	False	NA	NA	False	NA	NA	NA	24898951	24899131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_24899000_24899100
PB_novel_37357_0	chr7	+	1661	1	Intergenic	novelGene_3832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACGA	NA	False	NA	NA	False	NA	NA	NA	24938794	24940455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_24938800_24940500
PB_novel_37359_0	chr7	+	172	1	Intergenic	novelGene_3833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	24962050	24962222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_24962000_24962200
PB_novel_37361_0	chr7	-	176	1	Intergenic	novelGene_3834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGG	NA	False	NA	NA	False	NA	NA	NA	25019091	25018915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_25018900_25019100
PB_novel_37370_0	chr7	-	174	1	Intergenic	novelGene_3835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAGACTAAAA	6358	False	NA	NA	False	NA	NA	NA	25126125	25125951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_25126000_25126100
PB_novel_37374_0	chr7	+	2719	1	NIC	ENSMUSG00000053714.9	novel	1887	7	NA	NA	135736	-32549	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAACAAAAACAAA	9131	False	NA	NA	False	NA	NA	NA	25230574	25233293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_25230600_25233300
PB_novel_37378_0	chr7	+	146	1	Antisense	novelGene_ENSMUSG00000040725.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATTAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-15	NA	25420999	25421145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_25421000_25421100
PB_novel_37380_0	chr7	+	175	1	Intergenic	novelGene_3836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25426586	25426761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_25426600_25426800
PB_novel_37401_2	chr7	-	177	1	Intergenic	novelGene_3837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	26854063	26853886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_26853900_26854100
PB_novel_37406_0	chr7	-	2060	1	Antisense	novelGene_ENSMUSG00000080533.3_AS_novelGene_ENSMUSG00000078786.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26906380	26904320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_26904300_26906400
PB_novel_37410_0	chr7	+	181	1	Intergenic	novelGene_3838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAGGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	26947868	26948049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_26947900_26948000
PB_novel_37413_0	chr7	+	174	1	Intergenic	novelGene_3839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAATCATCAAAGAAA	NA	False	NA	9	True	NA	NA	NA	26995024	26995198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_26995000_26995200
PB_novel_37414_0	chr7	+	175	1	Intergenic	novelGene_3840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAACCAAAAAC	NA	False	NA	NA	False	NA	NA	NA	27000845	27001020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_27000800_27001000
PB_novel_37417_0	chr7	+	172	1	Intergenic	novelGene_3841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAAAAAAGACCAAAC	NA	False	NA	NA	False	NA	NA	NA	27014527	27014699	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_27014500_27014700
PB_novel_37423_0	chr7	+	165	1	Intergenic	novelGene_3842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAGAAAGAAAGAAAGAAAG	493	False	NA	NA	False	NA	NA	NA	27130880	27131045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_27130900_27131000
PB_novel_37424_0	chr7	+	175	1	Intergenic	novelGene_3843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAGAAAGAAAGA	4403	False	NA	NA	False	NA	NA	NA	27137983	27138158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_27138000_27138200
PB_novel_37425_1	chr7	+	177	1	Intergenic	novelGene_3844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAATAAAAA	7563	False	NA	NA	False	NA	NA	NA	27141143	27141320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_27141100_27141300
PB_novel_37426_0	chr7	+	180	1	Intergenic	novelGene_3845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGC	8545	False	NA	NA	False	NA	NA	NA	27142125	27142305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_27142100_27142300
PB_novel_37431_0	chr7	-	1649	1	FSM	ENSMUSG00000082016.4	ENSMUST00000117129.2	765	1	-3	-881	-3	881	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	8954	False	NA	NA	False	AATAAA	-13	NA	27169963	27168314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_27168300_27170000
PB_novel_37435_0	chr7	+	176	1	Intergenic	novelGene_3846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAGATAAATAAATAA	526	False	NA	NA	False	NA	NA	NA	27195679	27195855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_27195700_27195900
PB_novel_37438_0	chr7	+	177	1	Antisense	novelGene_ENSMUSG00000087371.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATACT	5912	False	NA	NA	False	NA	NA	NA	27202899	27203076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_27202900_27203100
PB_novel_37440_0	chr7	-	172	1	Intergenic	novelGene_3847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAACAAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	27210855	27210683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_27210700_27210900
PB_novel_37445_0	chr7	+	176	1	Intergenic	novelGene_3848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	1179	False	NA	NA	False	NA	NA	NA	27267936	27268112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_27267900_27268100
PB_novel_37448_0	chr7	+	172	1	Intergenic	novelGene_3849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAAACAA	NA	False	NA	NA	False	NA	NA	NA	27288547	27288719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_27288500_27288700
PB_novel_37449_0	chr7	-	157	1	Intergenic	novelGene_3850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	9506	False	NA	NA	False	NA	NA	NA	27330194	27330037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_27330000_27330200
PB_novel_37457_0	chr7	-	175	1	Intergenic	novelGene_3851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27379836	27379661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_27379700_27379800
PB_novel_37460_0	chr7	-	3406	1	Antisense	novelGene_ENSMUSG00000057093.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTCTCAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	27403348	27399942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_27399900_27403300
PB_novel_37463_0	chr7	-	2214	1	Antisense	novelGene_ENSMUSG00000037640.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27449142	27446928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_27446900_27449100
PB_novel_37491_0	chr7	+	177	1	Intergenic	novelGene_3852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27981724	27981901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_27981700_27981900
PB_novel_37492_0	chr7	+	174	1	Intergenic	novelGene_3853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTATTTAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	27982449	27982623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_27982400_27982600
PB_novel_37496_0	chr7	+	176	1	Intergenic	novelGene_3854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATATTTTTATG	NA	False	NA	NA	False	NA	NA	NA	28027112	28027288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28027100_28027300
PB_novel_37498_0	chr7	+	180	1	Intergenic	novelGene_3855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	28038759	28038939	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28038800_28038900
PB_novel_37500_0	chr7	-	150	1	Intergenic	novelGene_3856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAAGAATAATT	NA	False	NA	NA	False	NA	NA	NA	28074623	28074473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_28074500_28074600
PB_novel_37502_0	chr7	-	177	1	Intergenic	novelGene_3857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAACTGT	NA	False	NA	NA	False	NA	NA	NA	28097020	28096843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_28096800_28097000
PB_novel_37504_0	chr7	+	177	1	Intergenic	novelGene_3858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAATTTGTTTT	4889	False	NA	NA	False	NA	NA	NA	28125417	28125594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28125400_28125600
PB_novel_37505_0	chr7	+	190	1	Intergenic	novelGene_3859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAAAAGTAT	7640	False	NA	NA	False	NA	NA	NA	28128168	28128358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28128200_28128400
PB_novel_37506_0	chr7	+	168	1	Intergenic	novelGene_3860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAATTTAAAAATTA	1491	False	NA	NA	False	NA	NA	NA	28139082	28139250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28139100_28139200
PB_novel_37507_0	chr7	-	174	1	Intergenic	novelGene_3861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28157286	28157112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_28157100_28157300
PB_novel_37508_0	chr7	-	176	1	Intergenic	novelGene_3862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTAAAAAAATTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	28162794	28162618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_28162600_28162800
PB_novel_37509_0	chr7	-	180	1	Intergenic	novelGene_3863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	288	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATCACCCATT	NA	False	NA	NA	False	NA	NA	NA	28189311	28189131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_28189100_28189300
PB_novel_37512_0	chr7	+	183	1	Intergenic	novelGene_3864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAATATTTT	4598	False	NA	NA	False	NA	NA	NA	28192180	28192363	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28192200_28192400
PB_novel_37515_0	chr7	+	3003	1	Antisense	novelGene_ENSMUSG00000098558.3_AS_novelGene_ENSMUSG00000030602.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28258107	28261110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_28258100_28261100
PB_novel_37518_0	chr7	+	198	1	Intergenic	novelGene_3865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAAATAAATTAATAAAA	1937	False	NA	NA	False	NA	NA	NA	28318340	28318538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28318300_28318500
PB_novel_37521_0	chr7	+	237	1	Intergenic	novelGene_3866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAACAAGTTACTTA	NA	False	NA	NA	False	ATTAAA	-3	NA	28346999	28347236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28347000_28347200
PB_novel_37525_0	chr7	+	176	1	Intergenic	novelGene_3867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAGAAGTCA	1363	False	NA	NA	False	NA	NA	NA	28384791	28384967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28384800_28385000
PB_novel_37527_0	chr7	+	127	1	Intergenic	novelGene_3868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATATTTTTAA	NA	False	NA	NA	False	NA	NA	NA	28404077	28404204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28404100_28404200
PB_novel_37530_0	chr7	+	179	1	Intergenic	novelGene_3869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTTTTAAAAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	28429510	28429689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28429500_28429700
PB_novel_37535_14	chr7	-	4362	7	Antisense	novelGene_ENSMUSG00000015165.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	7170	False	NA	NA	False	AAAAAG	-10	NA	28520912	28514270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_28514619_28514702_28517957_28518067_28518347_28519574_28519697_28519966_28520169_28520637_28520699_28520816
PB_novel_37535_16	chr7	-	4474	6	Antisense	novelGene_ENSMUSG00000015165.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7170	False	NA	NA	False	AAAAAG	-11	NA	28520912	28514269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_28514619_28514702_28518347_28519574_28519697_28519966_28520169_28520637_28520699_28520816
PB_novel_37535_18	chr7	-	3679	2	Antisense	novelGene_ENSMUSG00000015165.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-11	NA	28518032	28514269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_28514619_28514702
PB_novel_37540_0	chr7	+	176	1	Intergenic	novelGene_3870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	28568858	28569034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28568900_28569000
PB_novel_37546_0	chr7	+	172	1	Intergenic	novelGene_3871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	28679075	28679247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28679100_28679200
PB_novel_37547_0	chr7	+	160	1	Intergenic	novelGene_3872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	28679523	28679683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28679500_28679700
PB_novel_37550_0	chr7	+	189	1	Intergenic	novelGene_3873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAGAAATTTGTTAAATA	NA	False	NA	NA	False	NA	NA	NA	28728594	28728783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28728600_28728800
PB_novel_37551_0	chr7	+	173	1	Intergenic	novelGene_3874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTAAAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	28733217	28733390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28733200_28733400
PB_novel_37555_0	chr7	+	174	1	Intergenic	novelGene_3875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACATTATTAAAAAA	121	False	NA	NA	False	NA	NA	NA	28832506	28832680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28832500_28832700
PB_novel_37557_0	chr7	+	192	1	Intergenic	novelGene_3876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTTGTTTATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28894152	28894344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28894200_28894300
PB_novel_37561_0	chr7	-	176	1	Intergenic	novelGene_3877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28966328	28966152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_28966200_28966300
PB_novel_37562_0	chr7	+	3564	1	Intergenic	novelGene_3878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAACACAAAAAC	1543	False	NA	NA	False	NA	NA	NA	28974162	28977726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_28974200_28977700
PB_novel_37563_0	chr7	-	176	1	Intergenic	novelGene_3879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATC	6786	False	NA	NA	False	NA	NA	NA	28975018	28974842	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_28974800_28975000
PB_novel_37565_0	chr7	-	166	1	Intergenic	novelGene_3880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGATTTAGCC	NA	False	NA	NA	False	NA	NA	NA	28994423	28994257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_28994300_28994400
PB_novel_37570_0	chr7	-	180	1	Intergenic	novelGene_3881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	307	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29199392	29199212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29199200_29199400
PB_novel_37571_0	chr7	-	177	1	Intergenic	novelGene_3882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAACTTAAAAAAAAA	7263	False	NA	NA	False	NA	NA	NA	29225310	29225133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29225100_29225300
PB_novel_37578_0	chr7	+	155	1	Intergenic	novelGene_3883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAATAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	29426990	29427145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_29427000_29427100
PB_novel_37585_0	chr7	-	176	1	Intergenic	novelGene_3884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAGAAAAAGCACAA	NA	False	NA	NA	False	NA	NA	NA	29525017	29524841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29524800_29525000
PB_novel_37592_0	chr7	+	175	1	Intergenic	novelGene_3897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAATAAATAGATAAATAA	4538	False	NA	NA	False	NA	NA	NA	29773184	29773359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_29773200_29773400
PB_novel_37593_0	chr7	+	164	1	Intergenic	novelGene_3885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	29602309	29602473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_29602300_29602500
PB_novel_37595_0	chr7	-	176	1	Intergenic	novelGene_3886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	29612405	29612229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29612200_29612400
PB_novel_37596_0	chr7	-	149	1	Intergenic	novelGene_3887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	29620523	29620374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29620400_29620500
PB_novel_37601_0	chr7	+	174	1	Intergenic	novelGene_3888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	29647330	29647504	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_29647300_29647500
PB_novel_37603_0	chr7	-	173	1	Intergenic	novelGene_3889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATCTTTTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	29657058	29656885	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29656900_29657100
PB_novel_37604_0	chr7	+	157	1	Intergenic	novelGene_3890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	29660511	29660668	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_29660500_29660700
PB_novel_37608_0	chr7	-	175	1	Intergenic	novelGene_3891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29688189	29688014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29688000_29688200
PB_novel_37611_0	chr7	-	312	1	Intergenic	novelGene_3892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACTGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29689310	29688998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29689000_29689300
PB_novel_37617_0	chr7	+	137	1	Intergenic	novelGene_3893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	29732009	29732146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_29732000_29732100
PB_novel_37619_0	chr7	-	159	1	Intergenic	novelGene_3894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	29746383	29746224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29746200_29746400
PB_novel_37620_0	chr7	-	171	1	Intergenic	novelGene_3895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTAAAAAAAAAAAGAGCA	NA	False	NA	NA	False	NA	NA	NA	29748361	29748190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29748200_29748400
PB_novel_37621_0	chr7	+	241	1	Intergenic	novelGene_3896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGAACATTACAT	NA	False	NA	NA	False	NA	NA	NA	29752205	29752446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_29752200_29752400
PB_novel_37631_0	chr7	+	173	1	Intergenic	novelGene_3898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29889136	29889309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_29889100_29889300
PB_novel_37634_0	chr7	-	175	1	Intergenic	novelGene_3899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATTAAAAAAAAAAAGAT	4605	False	NA	NA	False	NA	NA	NA	29901940	29901765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29901800_29901900
PB_novel_37638_0	chr7	+	177	1	Intergenic	novelGene_3900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATTCA	6402	False	NA	NA	False	NA	NA	NA	29914934	29915111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_29914900_29915100
PB_novel_37639_0	chr7	-	174	1	Intergenic	novelGene_3901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAATAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	29924978	29924804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_29924800_29925000
PB_novel_37640_0	chr7	+	176	1	Intergenic	novelGene_3902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	254	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29927988	29928164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_29928000_29928200
PB_novel_37646_0	chr7	-	2129	1	Antisense	novelGene_ENSMUSG00000036931.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGGAAAAAAAAAAAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	30126196	30124067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_30124100_30126200
PB_novel_37649_0	chr7	-	187	1	Intergenic	novelGene_3903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGATGCCTTGG	NA	False	NA	NA	False	NA	NA	NA	30176826	30176639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_30176600_30176800
PB_novel_37655_0	chr7	+	181	1	Antisense	novelGene_ENSMUSG00000036864.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAGCATACAAATG	NA	False	NA	NA	False	NA	NA	NA	30250988	30251169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_30251000_30251200
PB_novel_37658_0	chr7	+	174	1	Intergenic	novelGene_3904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	391	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	4467	False	NA	NA	False	NA	NA	NA	30319307	30319481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_30319300_30319500
PB_novel_37678_0	chr7	-	151	1	Intergenic	novelGene_3905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAGAAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	30889169	30889018	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_30889000_30889200
PB_novel_37683_0	chr7	-	172	1	Intergenic	novelGene_3906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	32916694	32916522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_32916500_32916700
PB_novel_37684_4	chr7	+	200	1	Antisense	novelGene_ENSMUSG00000052997.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	33863552	33863752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_33863600_33863800
PB_novel_37685_0	chr7	+	176	1	Intergenic	novelGene_3908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	282	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33859263	33859439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_33859300_33859400
PB_novel_37687_0	chr7	+	189	1	Intergenic	novelGene_3907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAAGTAGAAT	NA	False	NA	NA	False	NA	NA	NA	33812236	33812425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_33812200_33812400
PB_novel_37693_0	chr7	-	176	1	Intergenic	novelGene_3909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33882538	33882362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_33882400_33882500
PB_novel_37694_0	chr7	-	181	1	Intergenic	novelGene_3910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	33885533	33885352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_33885400_33885500
PB_novel_37707_0	chr7	+	178	1	Intergenic	novelGene_3911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	34055960	34056138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_34056000_34056100
PB_novel_37715_0	chr7	+	168	1	Intergenic	novelGene_3912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAGTAATAAATCTTA	725	False	NA	NA	False	NA	NA	NA	34389362	34389530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_34389400_34389500
PB_novel_37716_0	chr7	+	168	1	Intergenic	novelGene_3913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	34400232	34400400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_34400200_34400400
PB_novel_37725_0	chr7	-	174	1	Intergenic	novelGene_3914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATC	NA	False	NA	NA	False	NA	NA	NA	34705549	34705375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_34705400_34705500
PB_novel_37731_0	chr7	+	290	1	Intergenic	novelGene_3915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAATAAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	34937597	34937887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_34937600_34937900
PB_novel_37733_0	chr7	-	175	1	Intergenic	novelGene_3918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	35075983	35075808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_35075800_35076000
PB_novel_37737_0	chr7	+	156	1	Intergenic	novelGene_3916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAGAAAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	35003530	35003686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_35003500_35003700
PB_novel_37739_0	chr7	-	176	1	Intergenic	novelGene_3917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTCT	9677	False	NA	NA	False	NA	NA	NA	35046897	35046721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_35046700_35046900
PB_novel_37741_1	chr7	-	172	1	Intergenic	novelGene_3919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAAGGAATGAA	NA	False	NA	NA	False	NA	NA	NA	35098395	35098223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_35098200_35098400
PB_novel_37746_0	chr7	+	3096	1	Antisense	novelGene_ENSMUSG00000034875.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACACAATCAAATATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	35250528	35253624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_35250500_35253600
PB_novel_37747_0	chr7	-	170	1	Intergenic	novelGene_3920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAACTG	5251	False	NA	NA	False	NA	NA	NA	35270302	35270132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_35270100_35270300
PB_novel_37751_0	chr7	-	170	1	Intergenic	novelGene_3921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35378951	35378781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_35378800_35379000
PB_novel_37753_0	chr7	-	183	1	Intergenic	novelGene_3922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	35416655	35416472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_35416500_35416700
PB_novel_37754_0	chr7	-	175	1	Intergenic	novelGene_3923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35418788	35418613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_35418600_35418800
PB_novel_37755_0	chr7	+	119	1	Intergenic	novelGene_3924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35476750	35476869	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_35476800_35476900
PB_novel_37756_0	chr7	-	6801	1	Genic_Genomic	ENSMUSG00000044452.11	novel	NA	NA	NA	NA	-6584	-137	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	35485177	35478376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_35478400_35485200
PB_novel_37760_0	chr7	+	182	1	Intergenic	novelGene_3925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAAATAGT	NA	False	NA	NA	False	NA	NA	NA	35972637	35972819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_35972600_35972800
PB_novel_37769_0	chr7	-	175	1	Intergenic	novelGene_3926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGAGTTCAAGGCC	NA	False	NA	NA	False	NA	NA	NA	37834815	37834640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_37834600_37834800
PB_novel_37770_0	chr7	-	168	1	Intergenic	novelGene_3927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAACAAA	NA	False	NA	NA	False	NA	NA	NA	37869250	37869082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_37869100_37869200
PB_novel_37775_0	chr7	+	303	1	Intergenic	novelGene_3929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGAAACACTTAGA	NA	False	NA	NA	False	NA	NA	NA	39090092	39090395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_39090100_39090400
PB_novel_37787_0	chr7	-	3404	1	FSM	ENSMUSG00000056383.11	ENSMUST00000206430.2	1139	1	-53	-2212	32	2212	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41042771	41039367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_41039400_41042800
PB_novel_37789_1	chr7	+	176	1	Intergenic	novelGene_3932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAACCT	NA	False	NA	NA	False	NA	NA	NA	41213255	41213431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_41213300_41213400
PB_novel_37793_2	chr7	+	180	1	Intergenic	novelGene_3930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATTTAT	NA	False	NA	NA	False	NA	NA	NA	41150703	41150883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_41150700_41150900
PB_novel_37799_0	chr7	+	2742	1	Intergenic	novelGene_3931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41198953	41201695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_41199000_41201700
PB_novel_37807_0	chr7	-	259	1	Intergenic	novelGene_3933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	41564510	41564251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_41564300_41564500
PB_novel_37808_0	chr7	+	260	1	Intergenic	novelGene_3934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41597665	41597925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_41597700_41597900
PB_novel_37809_0	chr7	+	173	1	Intergenic	novelGene_3935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	41702242	41702415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_41702200_41702400
PB_novel_37815_0	chr7	-	2637	1	Intergenic	novelGene_3936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAACCAAAAAC	NA	False	NA	NA	False	NA	NA	NA	42143282	42140645	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_42140600_42143300
PB_novel_37816_0	chr7	+	170	1	Intergenic	novelGene_3937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	42141162	42141332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_42141200_42141300
PB_novel_37818_0	chr7	-	171	1	Intergenic	novelGene_3938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	42154316	42154145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_42154100_42154300
PB_novel_37833_0	chr7	-	177	1	Intergenic	novelGene_3939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	42304905	42304728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_42304700_42304900
PB_novel_37835_0	chr7	-	160	1	Intergenic	novelGene_3940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATTAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	42306703	42306543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_42306500_42306700
PB_novel_37837_0	chr7	+	174	1	Intergenic	novelGene_3941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAATAAAATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	42309007	42309181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_42309000_42309200
PB_novel_37841_0	chr7	+	2987	1	Antisense	novelGene_ENSMUSG00000069727.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-15	NA	42334754	42337741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_42334800_42337700
PB_novel_37842_0	chr7	-	2653	1	Genic_Genomic	ENSMUSG00000091594.3	novel	NA	NA	NA	NA	256	2008	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAATAAATAAATAAATA	NA	False	NA	-46	True	NA	NA	NA	42355537	42352884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_42352900_42355500
PB_novel_37849_0	chr7	-	2003	1	Intergenic	novelGene_3942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	42452421	42450418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_42450400_42452400
PB_novel_37852_0	chr7	-	2478	1	Intergenic	novelGene_3943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	42478913	42476435	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_42476400_42478900
PB_novel_37857_0	chr7	+	167	1	Antisense	novelGene_ENSMUSG00000090751.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	42552310	42552477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_42552300_42552500
PB_novel_37864_0	chr7	+	179	1	NIC	ENSMUSG00000091528.10	novel	2598	7	NA	NA	4497	-24633	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	42672718	42672897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_42672700_42672900
PB_novel_37866_0	chr7	-	230	1	Intergenic	novelGene_3944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	42741255	42741025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_42741000_42741300
PB_novel_37868_0	chr7	+	3183	1	FSM	ENSMUSG00000071952.4	ENSMUST00000087694.5	125	1	-270	-2788	-270	2788	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	-22	True	NA	NA	NA	42748872	42752055	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_42748900_42752100
PB_novel_37876_0	chr7	-	1731	1	Intergenic	novelGene_3945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	42829974	42828243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_42828200_42830000
PB_novel_37877_1	chr7	-	848	1	Intergenic	novelGene_3947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATCAAAAAAAAAAAAA	1106	False	NA	NA	False	NA	NA	NA	42866129	42865281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_42865300_42866100
PB_novel_37878_1	chr7	+	3911	1	Intergenic	novelGene_3946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	42844740	42848651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_42844700_42848700
PB_novel_37882_0	chr7	-	515	1	Antisense	novelGene_ENSMUSG00000074887.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	42871704	42871189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_42871200_42871700
PB_novel_37883_0	chr7	+	1740	1	Intergenic	novelGene_3948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	42876538	42878278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_42876500_42878300
PB_novel_37891_0	chr7	-	177	1	Intergenic	novelGene_3949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAACAACAACAGT	NA	False	NA	NA	False	NA	NA	NA	42919702	42919525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_42919500_42919700
PB_novel_37897_1	chr7	-	188	1	Intergenic	novelGene_3950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATGG	8377	False	NA	NA	False	NA	NA	NA	42972487	42972299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_42972300_42972500
PB_novel_37905_0	chr7	+	389	1	Intergenic	novelGene_3951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43205634	43206023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_43205600_43206000
PB_novel_37909_0	chr7	-	2058	1	Antisense	novelGene_ENSMUSG00000030472.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	43296503	43294445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_43294400_43296500
PB_novel_37914_0	chr7	-	169	1	Intergenic	novelGene_3952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACTTTAAAAAAAAGACAGAA	NA	False	NA	NA	False	NA	NA	NA	43696031	43695862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_43695900_43696000
PB_novel_37917_1	chr7	-	177	1	Intergenic	novelGene_3953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43939014	43938837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_43938800_43939000
PB_novel_37920_0	chr7	-	169	1	Antisense	novelGene_ENSMUSG00000038738.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	8546	False	NA	NA	False	NA	NA	NA	44007571	44007402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_44007400_44007600
PB_novel_37922_0	chr7	+	181	1	Intergenic	novelGene_3954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCTTTCCTCTAAAAAA	2690	False	NA	NA	False	NA	NA	NA	44018983	44019164	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_44019000_44019200
PB_novel_37923_0	chr7	+	2545	1	Intergenic	novelGene_3955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	2936	False	NA	NA	False	NA	NA	NA	44019229	44021774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_44019200_44021800
PB_novel_37924_0	chr7	-	175	1	Intergenic	novelGene_3956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	44026106	44025931	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_44025900_44026100
PB_novel_37927_0	chr7	-	177	1	Intergenic	novelGene_3957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAGTAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	44074102	44073925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_44073900_44074100
PB_novel_37929_0	chr7	+	1874	1	Intergenic	novelGene_3958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAACAAAAAAAAAAAAA	2	True	NA	NA	False	NA	NA	NA	44137278	44139152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_44137300_44139200
PB_novel_37947_0	chr7	-	2837	1	Antisense	novelGene_ENSMUSG00000109511.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAAATCTAAAAAAA	9682	False	NA	NA	False	NA	NA	NA	44470501	44467664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_44467700_44470500
PB_novel_37957_0	chr7	-	166	1	Intergenic	novelGene_3959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44588712	44588546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_44588500_44588700
PB_novel_37967_0	chr7	+	2069	1	Antisense	novelGene_ENSMUSG00000038406.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44658360	44660429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_44658400_44660400
PB_novel_37972_0	chr7	+	173	1	Intergenic	novelGene_3960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAACCTTTTTAA	5196	False	NA	NA	False	NA	NA	NA	44754188	44754361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_44754200_44754400
PB_novel_37973_1	chr7	-	178	1	Intergenic	novelGene_3961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGTC	NA	False	NA	NA	False	NA	NA	NA	44802232	44802054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_44802100_44802200
PB_novel_37975_0	chr7	+	177	1	Intergenic	novelGene_3962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATTTAT	NA	False	NA	NA	False	NA	NA	NA	44891983	44892160	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_44892000_44892200
PB_novel_37976_0	chr7	-	159	1	Intergenic	novelGene_3963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAATAAAAATAAAA	1385	False	NA	NA	False	NA	NA	NA	44900198	44900039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_44900000_44900200
PB_novel_37986_0	chr7	+	1317	1	Intergenic	novelGene_3964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45033908	45035225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_45033900_45035200
PB_novel_37988_0	chr7	-	176	1	Intergenic	novelGene_3965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATAAAAATATTT	6159	False	NA	NA	False	NA	NA	NA	45050900	45050724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_45050700_45050900
PB_novel_37989_0	chr7	+	157	1	Intergenic	novelGene_3966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAAATAAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	45053541	45053698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_45053500_45053700
PB_novel_38000_2	chr7	+	175	1	Intergenic	novelGene_3967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATCACAGCA	NA	False	NA	NA	False	NA	NA	NA	45119151	45119326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_45119200_45119300
PB_novel_38004_0	chr7	+	164	1	Antisense	novelGene_ENSMUSG00000011382.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45122632	45122796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_45122600_45122800
PB_novel_38011_0	chr7	-	157	1	Intergenic	novelGene_3968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAATAGAAAAA	9692	False	NA	NA	False	NA	NA	NA	45169861	45169704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_45169700_45169900
PB_novel_38012_0	chr7	+	238	1	Intergenic	novelGene_3969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGCAAAAAAAAAAAAAAAA	413	False	NA	NA	False	NA	NA	NA	45176561	45176799	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_45176600_45176800
PB_novel_38013_0	chr7	-	186	1	Intergenic	novelGene_3970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2497	False	NA	NA	False	NA	NA	NA	45177056	45176870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_45176900_45177100
PB_novel_38016_0	chr7	-	180	1	Intergenic	novelGene_3971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGGAAGAAGA	9597	False	NA	NA	False	NA	NA	NA	45194889	45194709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_45194700_45194900
PB_novel_38019_1	chr7	+	176	1	Intergenic	novelGene_3972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAAAAAGGCAC	1765	False	NA	NA	False	NA	NA	NA	45227444	45227620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_45227400_45227600
PB_novel_38039_0	chr7	-	2282	1	Antisense	novelGene_ENSMUSG00000030835.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	4534	False	NA	NA	False	NA	NA	NA	45727414	45725132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_45725100_45727400
PB_novel_38043_0	chr7	-	169	1	Intergenic	novelGene_3973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAAAAAGAAAGTATT	NA	False	NA	NA	False	NA	NA	NA	46328363	46328194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_46328200_46328400
PB_novel_38053_0	chr7	+	175	1	Intergenic	novelGene_3974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTCA	8651	False	NA	NA	False	NA	NA	NA	46436287	46436462	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_46436300_46436500
PB_novel_38056_0	chr7	+	221	1	Intergenic	novelGene_3975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCAATCAATCAATAAATA	NA	False	NA	NA	False	NA	NA	NA	46460457	46460678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_46460500_46460700
PB_novel_38059_0	chr7	+	177	1	Intergenic	novelGene_3976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	46474409	46474586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_46474400_46474600
PB_novel_38061_0	chr7	+	175	1	Intergenic	novelGene_3977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	46477956	46478131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_46478000_46478100
PB_novel_38063_0	chr7	+	164	1	Intergenic	novelGene_3978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	46499255	46499419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_46499300_46499400
PB_novel_38065_0	chr7	-	177	1	Intergenic	novelGene_3979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46506625	46506448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_46506400_46506600
PB_novel_38071_0	chr7	-	160	1	Intergenic	novelGene_3980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46552572	46552412	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_46552400_46552600
PB_novel_38072_0	chr7	-	174	1	Intergenic	novelGene_3981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAATAAAAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	46571204	46571030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_46571000_46571200
PB_novel_38073_2	chr7	+	173	1	Intergenic	novelGene_3982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46579197	46579370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_46579200_46579400
PB_novel_38075_0	chr7	-	173	1	Intergenic	novelGene_3983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	46610017	46609844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_46609800_46610000
PB_novel_38078_0	chr7	-	174	1	Intergenic	novelGene_3984	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAATTAAAAAAAA	1499	False	NA	NA	False	NA	NA	NA	46638298	46638124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_46638100_46638300
PB_novel_38080_0	chr7	+	136	1	Intergenic	novelGene_3985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46686283	46686419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_46686300_46686400
PB_novel_38083_0	chr7	-	154	1	Intergenic	novelGene_3986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAATAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	47810527	47810373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_47810400_47810500
PB_novel_38096_0	chr7	-	174	1	Intergenic	novelGene_3988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGACAAAAACGTCTAAG	NA	False	NA	NA	False	NA	NA	NA	49163038	49162864	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_49162900_49163000
PB_novel_38099_0	chr7	-	180	1	Intergenic	novelGene_3989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49211017	49210837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_49210800_49211000
PB_novel_38101_0	chr7	-	165	1	Intergenic	novelGene_3990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	49241226	49241061	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_49241100_49241200
PB_novel_38104_0	chr7	-	159	1	Intergenic	novelGene_3991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAATAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	49275942	49275783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_49275800_49275900
PB_novel_38105_0	chr7	-	186	1	Intergenic	novelGene_3992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	49280101	49279915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_49279900_49280100
PB_novel_38119_0	chr7	-	183	1	Intergenic	novelGene_3993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTTTTAAAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	51229206	51229023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_51229000_51229200
PB_novel_38121_0	chr7	-	4690	2	Genic_Genomic	ENSMUSG00000092118.2	novel	1691	1	NA	NA	1	3610	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAGAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	51512014	51506714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_51508550_51509159
PB_novel_38128_0	chr7	+	175	1	Intergenic	novelGene_3994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAAACCAAAACA	NA	False	NA	NA	False	NA	NA	NA	54075094	54075269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_54075100_54075300
PB_novel_38139_0	chr7	+	169	1	Intergenic	novelGene_3995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATCTTTAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	55584547	55584716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_55584500_55584700
PB_novel_38146_0	chr7	-	1856	1	Intergenic	novelGene_3996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55824886	55823030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_55823000_55824900
PB_novel_38151_0	chr7	-	161	1	Intergenic	novelGene_3997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAGAAAGAAATATT	NA	False	NA	NA	False	NA	NA	NA	57898694	57898533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_57898500_57898700
PB_novel_38152_0	chr7	+	175	1	Intergenic	novelGene_3998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAATAAAGAACAAGA	NA	False	NA	NA	False	NA	NA	NA	58279090	58279265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_58279100_58279300
PB_novel_38156_0	chr7	+	3514	1	Antisense	novelGene_ENSMUSG00000100826.7_AS_novelGene_ENSMUSG00000000948.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	59623847	59627361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_59623800_59627400
PB_novel_38157_0	chr7	-	2367	1	FSM	ENSMUSG00000000948.17	ENSMUST00000191456.2	3937	1	2797	-1227	2797	1227	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	59627627	59625260	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_59625300_59627600
PB_novel_38164_0	chr7	+	172	1	Intergenic	novelGene_3999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	61526855	61527027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_61526900_61527000
PB_novel_38182_0	chr7	-	173	1	Intergenic	novelGene_4000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAGAAAGAAAGAAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	63658708	63658535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_63658500_63658700
PB_novel_38190_2	chr7	-	2808	1	FSM	ENSMUSG00000108645.2	ENSMUST00000206473.2	436	1	-1379	-993	-1379	993	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63853651	63850843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_63850800_63853700
PB_novel_38198_0	chr7	+	1217	1	Antisense	novelGene_ENSMUSG00000033458.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64022129	64023346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_64022100_64023300
PB_novel_38202_0	chr7	+	133	1	Intergenic	novelGene_4001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64478784	64478917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_64478800_64478900
PB_novel_38203_0	chr7	-	199	1	Intergenic	novelGene_4002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAGTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64615837	64615638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_64615600_64615800
PB_novel_38207_0	chr7	+	175	1	Intergenic	novelGene_4003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAACAG	NA	False	NA	NA	False	NA	NA	NA	64953233	64953408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_64953200_64953400
PB_novel_38210_0	chr7	-	177	1	Intergenic	novelGene_4004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	64993064	64992887	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_64992900_64993100
PB_novel_38213_0	chr7	-	132	1	Intergenic	novelGene_4005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACAAAACCAAAACC	NA	False	NA	NA	False	NA	NA	NA	65101282	65101150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_65101200_65101300
PB_novel_38223_0	chr7	+	187	1	Intergenic	novelGene_4006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAACAAACAAACA	NA	False	NA	6	True	NA	NA	NA	65471727	65471914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_65471700_65471900
PB_novel_38232_0	chr7	+	179	1	Intergenic	novelGene_4007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65798823	65799002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_65798800_65799000
PB_novel_38250_0	chr7	+	177	1	Intergenic	novelGene_4008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATT	NA	False	NA	NA	False	NA	NA	NA	67727938	67728115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_67727900_67728100
PB_novel_38256_0	chr7	-	178	1	Intergenic	novelGene_4009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67884646	67884468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_67884500_67884600
PB_novel_38258_0	chr7	-	179	2	Intergenic	novelGene_4010	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGATGTAGAA	NA	False	NA	NA	False	NA	NA	NA	67905255	67905056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_67905066_67905085
PB_novel_38258_1	chr7	-	192	1	Intergenic	novelGene_4011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	67905256	67905064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_67905100_67905300
PB_novel_38266_0	chr7	+	177	1	Antisense	novelGene_ENSMUSG00000109097.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAGAAATACTATT	3559	False	NA	NA	False	NA	NA	NA	69921736	69921913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_69921700_69921900
PB_novel_38276_0	chr7	+	184	1	Intergenic	novelGene_4012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAATAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	73075488	73075672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_73075500_73075700
PB_novel_38279_0	chr7	+	3513	1	Antisense	novelGene_ENSMUSG00000078671.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATGCAAAAAAAAAAAAAAAA	2187	False	NA	NA	False	TTTAAA	-35	NA	73110471	73113984	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_73110500_73114000
PB_novel_38282_0	chr7	-	172	1	Intergenic	novelGene_4013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATATAAA	NA	False	NA	NA	False	NA	NA	NA	73168249	73168077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_73168100_73168200
PB_novel_38294_0	chr7	+	203	1	Intergenic	novelGene_4014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	73296198	73296401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_73296200_73296400
PB_novel_38295_0	chr7	-	175	1	Intergenic	novelGene_4015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATCTAAAAAAAAAAAGG	8402	False	NA	NA	False	NA	NA	NA	73302548	73302373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_73302400_73302500
PB_novel_38299_0	chr7	-	164	1	Intergenic	novelGene_4016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	73625692	73625528	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_73625500_73625700
PB_novel_38302_0	chr7	-	176	1	Intergenic	novelGene_4017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	7519	False	NA	NA	False	NA	NA	NA	73988861	73988685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_73988700_73988900
PB_novel_38304_0	chr7	+	182	1	Intergenic	novelGene_4018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAATCTTTAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	75012958	75013140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_75013000_75013100
PB_novel_38316_0	chr7	+	5795	1	NIC	ENSMUSG00000055652.15	novel	3403	3	NA	NA	9	-11460	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCAAAAAAAAAAAAAAATA	NA	False	NA	NA	False	TTTAAA	-31	NA	75498120	75503915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_75498100_75503900
PB_novel_38338_0	chr7	+	176	1	Intergenic	novelGene_4019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAACACATT	NA	False	NA	NA	False	NA	NA	NA	78863364	78863540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_78863400_78863500
PB_novel_38345_0	chr7	+	260	1	Intergenic	novelGene_4020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATAAATCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	79017778	79018038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_79017800_79018000
PB_novel_38346_0	chr7	-	175	1	Intergenic	novelGene_4021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	79039716	79039541	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_79039500_79039700
PB_novel_38351_0	chr7	-	204	1	Intergenic	novelGene_4022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79059561	79059357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_79059400_79059600
PB_novel_38353_2	chr7	-	3638	1	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79095443	79091805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_79091800_79095400
PB_novel_38355_0	chr7	+	176	1	Intergenic	novelGene_4023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79112539	79112715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_79112500_79112700
PB_novel_38356_0	chr7	+	178	1	Intergenic	novelGene_4024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTATGTAACA	694	False	NA	NA	False	NA	NA	NA	79273980	79274158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_79274000_79274200
PB_novel_38359_0	chr7	+	162	1	Intergenic	novelGene_4025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAGAATGGC	5529	False	NA	NA	False	NA	NA	NA	79296096	79296258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_79296100_79296300
PB_novel_38369_0	chr7	-	173	1	Intergenic	novelGene_4026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAACAACAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	79374151	79373978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_79374000_79374200
PB_novel_38373_0	chr7	-	178	1	Intergenic	novelGene_4027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	79433098	79432920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_79432900_79433100
PB_novel_38379_1	chr7	-	185	1	Intergenic	novelGene_4028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	AATAAA	-5	NA	79598683	79598498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_79598500_79598700
PB_novel_38382_0	chr7	-	183	1	Intergenic	novelGene_4029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAAGAGTGCCAAT	NA	False	NA	NA	False	NA	NA	NA	79641216	79641033	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_79641000_79641200
PB_novel_38383_0	chr7	-	177	1	Intergenic	novelGene_4030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	79654222	79654045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_79654000_79654200
PB_novel_38384_1	chr7	+	290	1	Intergenic	novelGene_4031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	79658795	79659085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_79658800_79659100
PB_novel_38386_0	chr7	+	153	1	Intergenic	novelGene_4032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	5350	False	NA	NA	False	NA	NA	NA	79665586	79665739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_79665600_79665700
PB_novel_38397_0	chr7	-	4445	1	FSM	ENSMUSG00000108494.2	ENSMUST00000206384.2	1831	1	-2665	51	-2665	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACCAAACAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79765047	79760602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_79760600_79765000
PB_novel_38400_0	chr7	-	171	1	Intergenic	novelGene_4033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	9419	False	NA	NA	False	NA	NA	NA	79781361	79781190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_79781200_79781400
PB_novel_38403_0	chr7	-	135	1	Intergenic	novelGene_4034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	2244	False	NA	NA	False	NA	NA	NA	79825399	79825264	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_79825300_79825400
PB_novel_38405_0	chr7	+	169	1	Intergenic	novelGene_4035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACCACAAAAAATA	7555	False	NA	NA	False	NA	NA	NA	79829361	79829530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_79829400_79829500
PB_novel_38406_0	chr7	+	3389	1	NIC	ENSMUSG00000030539.14	novel	3949	15	NA	NA	14	-23822	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAACAATAACAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	79836602	79839991	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_79836600_79840000
PB_novel_38407_0	chr7	+	160	1	Intergenic	novelGene_4036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATAAATC	441	False	NA	NA	False	NA	NA	NA	79843012	79843172	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_79843000_79843200
PB_novel_38411_0	chr7	-	198	1	Antisense	novelGene_ENSMUSG00000030539.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	8590	False	NA	NA	False	NA	NA	NA	79876022	79875824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_79875800_79876000
PB_novel_38414_0	chr7	+	175	1	Intergenic	novelGene_4037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAAAAAAAATTG	1786	False	NA	NA	False	NA	NA	NA	79892889	79893064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_79892900_79893100
PB_novel_38415_0	chr7	-	125	1	Intergenic	novelGene_4038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATAAAATAAGAT	NA	False	NA	NA	False	NA	NA	NA	79896719	79896594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_79896600_79896700
PB_novel_38427_0	chr7	-	166	1	Intergenic	novelGene_4039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAATAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80044394	80044228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_80044200_80044400
PB_novel_38431_0	chr7	+	168	1	Intergenic	novelGene_4040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAAATAAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	80124534	80124702	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_80124500_80124700
PB_novel_38435_0	chr7	+	178	1	Intergenic	novelGene_4041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAATTAAATTTAATTA	8356	False	NA	NA	False	NA	NA	NA	80195276	80195454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_80195300_80195500
PB_novel_38436_0	chr7	+	187	1	Intergenic	novelGene_4042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTGAGTTC	4247	False	NA	NA	False	NA	NA	NA	80202843	80203030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_80202800_80203000
PB_novel_38440_0	chr7	-	103	1	Intergenic	novelGene_4043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATCGTAA	NA	False	NA	NA	False	NA	NA	NA	80351823	80351720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_80351700_80351800
PB_novel_38442_0	chr7	-	173	1	Intergenic	novelGene_4044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATTCCAG	NA	False	NA	NA	False	NA	NA	NA	80355721	80355548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_80355500_80355700
PB_novel_38443_0	chr7	+	176	1	Intergenic	novelGene_4045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACATTGAAA	NA	False	NA	NA	False	NA	NA	NA	80422133	80422309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_80422100_80422300
PB_novel_38448_0	chr7	-	220	1	Intergenic	novelGene_4046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACTTAAATAAGAAAGTAAT	NA	False	NA	NA	False	TATAAA	-26	NA	80483322	80483102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_80483100_80483300
PB_novel_38449_0	chr7	+	173	1	Intergenic	novelGene_4047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CCAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	80484179	80484352	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_80484200_80484400
PB_novel_38456_0	chr7	+	2994	1	Antisense	novelGene_ENSMUSG00000025724.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80576204	80579198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_80576200_80579200
PB_novel_38458_1	chr7	-	171	1	Intergenic	novelGene_4048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	80603579	80603408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_80603400_80603600
PB_novel_38462_0	chr7	-	152	1	Intergenic	novelGene_4049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	80657921	80657769	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_80657800_80657900
PB_novel_38466_0	chr7	+	172	1	Intergenic	novelGene_4050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATCTTTTAAAAAATAA	698	False	NA	NA	False	NA	NA	NA	80804214	80804386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_80804200_80804400
PB_novel_38467_0	chr7	+	173	1	Intergenic	novelGene_4051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5567	False	NA	NA	False	NA	NA	NA	80836395	80836568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_80836400_80836600
PB_novel_38468_0	chr7	-	3198	1	FSM	ENSMUSG00000083774.2	ENSMUST00000121753.2	513	1	-2386	-299	-2386	299	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	GATAAA	-37	NA	80875008	80871810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_80871800_80875000
PB_novel_38470_0	chr7	-	2778	1	Intergenic	novelGene_4052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	9397	False	NA	NA	False	NA	NA	NA	80895673	80892895	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_80892900_80895700
PB_novel_38473_0	chr7	+	175	1	Intergenic	novelGene_4053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAATGTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80987219	80987394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_80987200_80987400
PB_novel_38476_0	chr7	-	801	1	Intergenic	novelGene_4054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGAAAAAAAAAAAAATCTG	NA	False	NA	NA	False	AATAAA	-7	NA	81071018	81070217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_81070200_81071000
PB_novel_38477_0	chr7	-	177	1	Intergenic	novelGene_4055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATTAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	81081807	81081630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_81081600_81081800
PB_novel_38478_0	chr7	+	5558	1	FSM	ENSMUSG00002076102.1	ENSMUST00020182748.1	127	1	-3933	-1498	-3933	1498	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAAAAACTATCA	NA	False	NA	-11	True	AGTAAA	-26	NA	81175669	81181227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_+_81175700_81181200
PB_novel_38487_0	chr7	+	177	1	Intergenic	novelGene_4056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	81437216	81437393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_81437200_81437400
PB_novel_38490_0	chr7	-	185	1	Intergenic	novelGene_4057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAGAAGAAGAGT	NA	False	NA	NA	False	NA	NA	NA	81465414	81465229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_81465200_81465400
PB_novel_38491_0	chr7	-	170	1	Intergenic	novelGene_4058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	981	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCTTTAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	81502366	81502196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_81502200_81502400
PB_novel_38495_0	chr7	+	162	1	Intergenic	novelGene_4059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAATTTAAAAAAACA	3563	False	NA	NA	False	NA	NA	NA	81575432	81575594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_81575400_81575600
PB_novel_38497_0	chr7	-	168	1	Intergenic	novelGene_4060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81665945	81665777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_81665800_81665900
PB_novel_38507_0	chr7	-	308	1	Intergenic	novelGene_4061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGCCAAAAAAAAAAAA	1180	False	NA	NA	False	NA	NA	NA	82358483	82358175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_82358200_82358500
PB_novel_38514_0	chr7	-	158	1	Intergenic	novelGene_4062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	82623683	82623525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_82623500_82623700
PB_novel_38530_0	chr7	+	175	1	Intergenic	novelGene_4063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAAATATTTA	NA	False	NA	NA	False	NA	NA	NA	86465560	86465735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_86465600_86465700
PB_novel_38534_0	chr7	+	172	1	Intergenic	novelGene_4064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	88201993	88202165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_88202000_88202200
PB_novel_38537_0	chr7	+	176	1	Intergenic	novelGene_4065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88877922	88878098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_88877900_88878100
PB_novel_38549_0	chr7	+	167	1	Intergenic	novelGene_4066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	89614706	89614873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_89614700_89614900
PB_novel_38550_0	chr7	-	175	1	Intergenic	novelGene_4067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	89622554	89622379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_89622400_89622600
PB_novel_38551_1	chr7	-	176	1	Intergenic	novelGene_4068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATGT	NA	False	NA	NA	False	NA	NA	NA	89659834	89659658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_89659700_89659800
PB_novel_38558_0	chr7	+	205	1	Intergenic	novelGene_4069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATGCCTAAAATTA	NA	False	NA	NA	False	NA	NA	NA	90090859	90091064	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_90090900_90091100
PB_novel_38567_0	chr7	+	170	1	Intergenic	novelGene_4070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCTTTAAAAAAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	92303511	92303681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_92303500_92303700
PB_novel_38569_0	chr7	+	5230	1	Antisense	novelGene_ENSMUSG00000041328.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-42	NA	92310035	92315265	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_92310000_92315300
PB_novel_38578_0	chr7	-	172	1	Intergenic	novelGene_4071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAGTATGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93314495	93314323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_93314300_93314500
PB_novel_38585_0	chr7	-	175	1	Intergenic	novelGene_4072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAGAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95908635	95908460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_95908500_95908600
PB_novel_38591_0	chr7	+	164	1	Intergenic	novelGene_4073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	189	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAACAACAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96402221	96402385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_96402200_96402400
PB_novel_38597_0	chr7	+	167	1	Intergenic	novelGene_4074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAATAAATTAAAAAAAAAA	8621	False	NA	NA	False	NA	NA	NA	96627717	96627884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_96627700_96627900
PB_novel_38602_0	chr7	-	170	1	Intergenic	novelGene_4075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	96933052	96932882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_96932900_96933100
PB_novel_38605_0	chr7	+	173	1	Intergenic	novelGene_4076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	9818	False	NA	NA	False	NA	NA	NA	97121500	97121673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_97121500_97121700
PB_novel_38607_0	chr7	+	161	1	Intergenic	novelGene_4077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTTAAAAAAA	5031	False	NA	NA	False	NA	NA	NA	97153919	97154080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_97153900_97154100
PB_novel_38615_1	chr7	-	9955	2	NNC	ENSMUSG00000086433.2	novel	324	3	NA	NA	-2659	-39386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAAAAACAAT	NA	False	NA	NA	False	NA	NA	NA	97296978	97286941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_-_97296287_97296368
PB_novel_38619_0	chr7	-	157	1	Intergenic	novelGene_4078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	97459659	97459502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_97459500_97459700
PB_novel_38620_0	chr7	+	176	1	Intergenic	novelGene_4079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	97477661	97477837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_97477700_97477800
PB_novel_38628_0	chr7	+	160	1	Intergenic	novelGene_4080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATTGA	7074	False	NA	NA	False	AATAAA	-15	NA	97742283	97742443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_97742300_97742400
PB_novel_38632_0	chr7	-	158	1	Intergenic	novelGene_4081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCCA	NA	False	NA	NA	False	NA	NA	NA	97837998	97837840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_97837800_97838000
PB_novel_38638_0	chr7	+	174	1	Intergenic	novelGene_4082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAATTCACATAATTT	NA	False	NA	NA	False	NA	NA	NA	97930228	97930402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_97930200_97930400
PB_novel_38639_0	chr7	+	177	1	Intergenic	novelGene_4083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	97943872	97944049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_97943900_97944000
PB_novel_38643_0	chr7	+	136	1	Intergenic	novelGene_4084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCTTTAAAAAGAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	98218954	98219090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_98219000_98219100
PB_novel_38654_0	chr7	+	3090	1	Intergenic	novelGene_4085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98577318	98580408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_98577300_98580400
PB_novel_38663_0	chr7	+	173	1	Intergenic	novelGene_4086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAATCTTA	NA	False	NA	NA	False	NA	NA	NA	98911551	98911724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_98911600_98911700
PB_novel_38667_0	chr7	-	200	1	Intergenic	novelGene_4087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99081061	99080861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_99080900_99081100
PB_novel_38669_0	chr7	+	170	1	Intergenic	novelGene_4088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATCCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	99124640	99124810	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_99124600_99124800
PB_novel_38670_1	chr7	-	176	1	Intergenic	novelGene_4089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7704	False	NA	NA	False	NA	NA	NA	99154517	99154341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_99154300_99154500
PB_novel_38676_0	chr7	-	175	1	Intergenic	novelGene_4090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAATAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	99196636	99196461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_99196500_99196600
PB_novel_38691_0	chr7	+	171	1	Intergenic	novelGene_4091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7221	False	NA	NA	False	NA	NA	NA	99986984	99987155	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_99987000_99987200
PB_novel_38693_0	chr7	+	2938	1	Antisense	novelGene_ENSMUSG00000030718.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	8105	False	NA	NA	False	NA	NA	NA	100014270	100017208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_100014300_100017200
PB_novel_38699_0	chr7	-	174	1	Intergenic	novelGene_4092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGATTTACTTACAT	NA	False	NA	NA	False	NA	NA	NA	100178615	100178441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_100178400_100178600
PB_novel_38700_0	chr7	-	176	1	Intergenic	novelGene_4093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	100178938	100178762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_100178800_100178900
PB_novel_38708_0	chr7	+	163	1	Intergenic	novelGene_4094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATAAATCTTTTTTT	2978	False	NA	NA	False	NA	NA	NA	100267634	100267797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_100267600_100267800
PB_novel_38712_0	chr7	-	168	1	Intergenic	novelGene_4095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	100282144	100281976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_100282000_100282100
PB_novel_38714_0	chr7	-	178	1	Intergenic	novelGene_4096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	157	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAATAAAAATTACT	NA	False	NA	NA	False	NA	NA	NA	100333146	100332968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_100333000_100333100
PB_novel_38722_0	chr7	-	170	1	Intergenic	novelGene_4097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100403690	100403520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_100403500_100403700
PB_novel_38725_0	chr7	+	183	1	Intergenic	novelGene_4098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATAAATAAATAAAAATTT	5327	False	NA	NA	False	NA	NA	NA	100478347	100478530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_100478300_100478500
PB_novel_38726_0	chr7	-	177	1	Intergenic	novelGene_4099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	100481672	100481495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_100481500_100481700
PB_novel_38729_0	chr7	-	174	1	Intergenic	novelGene_4100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTAAAAAAAAATCTGTAA	NA	False	NA	NA	False	NA	NA	NA	100791183	100791009	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_100791000_100791200
PB_novel_38734_0	chr7	+	176	1	Intergenic	novelGene_4101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGACATTAAA	NA	False	NA	NA	False	NA	NA	NA	100963108	100963284	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_100963100_100963300
PB_novel_38740_0	chr7	-	176	1	Intergenic	novelGene_4102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101271222	101271046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_101271000_101271200
PB_novel_38745_0	chr7	+	175	1	Intergenic	novelGene_4103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101446550	101446725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_101446600_101446700
PB_novel_38746_0	chr7	+	157	1	Intergenic	novelGene_4104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAACATGAC	NA	False	NA	NA	False	NA	NA	NA	101473993	101474150	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_101474000_101474200
PB_novel_38752_0	chr7	-	174	1	Intergenic	novelGene_4105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	101509892	101509718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_101509700_101509900
PB_novel_38756_0	chr7	-	170	1	Intergenic	novelGene_4106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	101574990	101574820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_101574800_101575000
PB_novel_38761_0	chr7	+	175	1	Intergenic	novelGene_4107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	101610186	101610361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_101610200_101610400
PB_novel_38769_0	chr7	+	170	1	Intergenic	novelGene_4108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101798108	101798278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_101798100_101798300
PB_novel_38772_0	chr7	-	3444	1	Intergenic	novelGene_4109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	9177	False	NA	NA	False	NA	NA	NA	101823767	101820323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_101820300_101823800
PB_novel_38773_0	chr7	+	176	1	Intergenic	novelGene_4110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	5976	False	NA	NA	False	NA	NA	NA	101826721	101826897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_101826700_101826900
PB_novel_38774_0	chr7	+	176	1	Intergenic	novelGene_4111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101831890	101832066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_101831900_101832100
PB_novel_38776_0	chr7	-	175	1	Intergenic	novelGene_4112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	292	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101944016	101943841	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_101943800_101944000
PB_novel_38779_0	chr7	-	171	1	Intergenic	novelGene_4113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAATAGAATAAATGG	NA	False	NA	NA	False	NA	NA	NA	101989670	101989499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_101989500_101989700
PB_novel_38781_0	chr7	+	177	1	Intergenic	novelGene_4114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	443	False	NA	NA	False	NA	NA	NA	102066197	102066374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_102066200_102066400
PB_novel_38783_0	chr7	-	6832	1	Antisense	novelGene_ENSMUSG00000030978.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1517	False	NA	NA	False	NA	NA	NA	102098725	102091893	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_102091900_102098700
PB_novel_38789_0	chr7	-	173	1	Intergenic	novelGene_4115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	102275414	102275241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_102275200_102275400
PB_novel_38796_0	chr7	-	171	1	Intergenic	novelGene_4116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCTTAAAAAAAAAAAAAAAG	9402	False	NA	NA	False	NA	NA	NA	103872666	103872495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_103872500_103872700
PB_novel_38803_0	chr7	-	251	1	Intergenic	novelGene_4117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103907029	103906778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_103906800_103907000
PB_novel_38804_0	chr7	-	173	1	Intergenic	novelGene_4118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAAAGAACC	NA	False	NA	NA	False	NA	NA	NA	103986494	103986321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_103986300_103986500
PB_novel_38810_0	chr7	+	1925	1	Intergenic	novelGene_4119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	104901548	104903473	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_104901500_104903500
PB_novel_38817_0	chr7	+	177	1	Intergenic	novelGene_4120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	105167805	105167982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_105167800_105168000
PB_novel_38835_0	chr7	+	3639	1	Intergenic	novelGene_4121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACCAAAAACAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	106888670	106892309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_106888700_106892300
PB_novel_38838_0	chr7	-	2526	1	Antisense	novelGene_ENSMUSG00000057215.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106899277	106896751	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_106896800_106899300
PB_novel_38842_0	chr7	-	2524	1	Intergenic	novelGene_4122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106958676	106956152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_106956200_106958700
PB_novel_38847_0	chr7	+	157	1	Intergenic	novelGene_4123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAATAAATAAAATTTTT	4111	False	NA	NA	False	NA	NA	NA	107171100	107171257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_107171100_107171300
PB_novel_38848_0	chr7	+	174	1	Intergenic	novelGene_4124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAATAATAGCTAAAG	NA	False	NA	NA	False	NA	NA	NA	107230035	107230209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_107230000_107230200
PB_novel_38852_0	chr7	-	181	1	Intergenic	novelGene_4125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATTACCAAAAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	107871147	107870966	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_107871000_107871100
PB_novel_38856_0	chr7	-	3155	1	NIC	ENSMUSG00000048330.15	novel	5281	6	NA	NA	-3	584	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	108682521	108679366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_108679400_108682500
PB_novel_38862_0	chr7	+	174	1	Intergenic	novelGene_4126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAAACAAAAG	NA	False	NA	NA	False	NA	NA	NA	109098771	109098945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_109098800_109098900
PB_novel_38867_0	chr7	-	177	1	Intergenic	novelGene_4127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	109250152	109249975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_109250000_109250200
PB_novel_38873_0	chr7	+	181	1	Intergenic	novelGene_4128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAAAAAACTTTCATTA	NA	False	NA	NA	False	NA	NA	NA	109267282	109267463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_109267300_109267500
PB_novel_38879_0	chr7	+	185	1	Intergenic	novelGene_4129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAGAATCTC	NA	False	NA	NA	False	NA	NA	NA	109427849	109428034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_109427800_109428000
PB_novel_38899_0	chr7	-	194	1	Intergenic	novelGene_4130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	8138	False	NA	NA	False	NA	NA	NA	109715736	109715542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_109715500_109715700
PB_novel_38907_0	chr7	+	167	1	Intergenic	novelGene_4131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGATGCT	NA	False	NA	NA	False	NA	NA	NA	109766853	109767020	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_109766900_109767000
PB_novel_38913_0	chr7	+	171	1	Intergenic	novelGene_4132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	7079	False	NA	NA	False	NA	NA	NA	109805754	109805925	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_109805800_109805900
PB_novel_38920_0	chr7	+	155	1	Intergenic	novelGene_4133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAATAAATAAATCT	8647	False	NA	NA	False	NA	NA	NA	110142901	110143056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_110142900_110143100
PB_novel_38922_0	chr7	+	181	1	Intergenic	novelGene_4134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGAAATCTA	NA	False	NA	NA	False	NA	NA	NA	110194881	110195062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_110194900_110195100
PB_novel_38924_0	chr7	-	195	1	Intergenic	novelGene_4135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110220864	110220669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_110220700_110220900
PB_novel_38926_0	chr7	-	222	1	Intergenic	novelGene_4136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGGGAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	110336713	110336491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_110336500_110336700
PB_novel_38927_0	chr7	+	175	1	Intergenic	novelGene_4137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGAGTCA	NA	False	NA	NA	False	NA	NA	NA	110435797	110435972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_110435800_110436000
PB_novel_38932_0	chr7	+	2189	1	Antisense	novelGene_ENSMUSG00000005610.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATACTGAAATTAAAAAAAA	NA	False	NA	NA	False	AATGAA	-38	NA	110672924	110675113	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_110672900_110675100
PB_novel_38934_0	chr7	+	175	1	Intergenic	novelGene_4138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAAAACCAAGAA	NA	False	NA	NA	False	NA	NA	NA	110693072	110693247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_110693100_110693200
PB_novel_38935_0	chr7	-	176	1	Intergenic	novelGene_4139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACAAAGCCATTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	110706885	110706709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_110706700_110706900
PB_novel_38938_0	chr7	-	172	1	Intergenic	novelGene_4140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	110726985	110726813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_110726800_110727000
PB_novel_38940_0	chr7	+	165	1	Intergenic	novelGene_4141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTAAATCTTTAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	111449762	111449927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_111449800_111449900
PB_novel_38948_0	chr7	-	1272	1	Intergenic	novelGene_4142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112283206	112281934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_112281900_112283200
PB_novel_38950_0	chr7	+	176	1	Intergenic	novelGene_4143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATCCAG	4734	False	NA	NA	False	NA	NA	NA	112366373	112366549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_112366400_112366500
PB_novel_38954_0	chr7	-	177	1	Intergenic	novelGene_4144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112423674	112423497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_112423500_112423700
PB_novel_38956_0	chr7	+	176	1	Intergenic	novelGene_4145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112442139	112442315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_112442100_112442300
PB_novel_38964_0	chr7	-	523	1	Intergenic	novelGene_4146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	112820379	112819856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_112819900_112820400
PB_novel_38967_0	chr7	-	2710	2	Antisense	novelGene_ENSMUSG00000055116.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAAAAAAAAAAAACCCG	NA	False	NA	NA	False	AGTAAA	-36	NA	112861908	112859146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_112860567_112860618
PB_novel_38967_1	chr7	-	2073	2	Antisense	novelGene_ENSMUSG00000055116.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATGGGAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-30	NA	112861272	112859152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_112860572_112860618
PB_novel_38976_0	chr7	+	176	1	Intergenic	novelGene_4147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAACTGAATAACATT	3534	False	NA	NA	False	NA	NA	NA	113625135	113625311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_113625100_113625300
PB_novel_38979_0	chr7	-	174	1	Intergenic	novelGene_4148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAATC	NA	False	NA	NA	False	NA	NA	NA	113800864	113800690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_113800700_113800900
PB_novel_38984_0	chr7	+	176	1	Intergenic	novelGene_4149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	113855033	113855209	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_113855000_113855200
PB_novel_38992_0	chr7	+	177	1	Intergenic	novelGene_4151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115683223	115683400	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_115683200_115683400
PB_novel_38993_0	chr7	-	177	1	Intergenic	novelGene_4152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	678	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATTATAA	NA	False	NA	NA	False	NA	NA	NA	115685474	115685297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_115685300_115685500
PB_novel_38996_0	chr7	+	4249	2	Antisense	novelGene_ENSMUSG00000045659.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115810624	115814911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_115814136_115814173
PB_novel_38997_0	chr7	+	176	1	Intergenic	novelGene_4153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAACAAACAAACAAACT	NA	False	NA	NA	False	NA	NA	NA	115816031	115816207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_115816000_115816200
PB_novel_39005_0	chr7	+	172	1	Intergenic	novelGene_4154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAATTAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	115908343	115908515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_115908300_115908500
PB_novel_39008_0	chr7	-	171	1	Intergenic	novelGene_4155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGACAAGAATTAT	NA	False	NA	NA	False	NA	NA	NA	115925168	115924997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_115925000_115925200
PB_novel_39011_0	chr7	+	177	1	Intergenic	novelGene_4156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115926971	115927148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_115927000_115927100
PB_novel_39012_14	chr7	-	177	1	Intergenic	novelGene_4158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	236	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115962483	115962306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_115962300_115962500
PB_novel_39012_6	chr7	-	176	1	Intergenic	novelGene_4157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	115953687	115953511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_115953500_115953700
PB_novel_39013_0	chr7	-	175	1	Antisense	novelGene_ENSMUSG00000108738.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	115935429	115935254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_115935300_115935400
PB_novel_39019_0	chr7	-	164	1	Intergenic	novelGene_4159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	9057	False	NA	NA	False	NA	NA	NA	116022050	116021886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_116021900_116022000
PB_novel_39025_1	chr7	-	176	1	Intergenic	novelGene_4160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAAAGATTCCACT	5500	False	NA	NA	False	NA	NA	NA	116184147	116183971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_116184000_116184100
PB_novel_39029_0	chr7	-	97	1	Intergenic	novelGene_4161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAACAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	116310801	116310704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_116310700_116310800
PB_novel_39034_3	chr7	+	5029	1	Antisense	novelGene_ENSMUSG00000030655.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117741190	117746219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_117741200_117746200
PB_novel_39036_0	chr7	-	176	1	Intergenic	novelGene_4162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	117781421	117781245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_117781200_117781400
PB_novel_39036_1	chr7	-	177	2	Intergenic	novelGene_4163	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	117819883	117781245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_117781394_117819854
PB_novel_39038_0	chr7	+	176	1	Intergenic	novelGene_4164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAAAATTTTTAATT	NA	False	NA	NA	False	NA	NA	NA	117834512	117834688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_117834500_117834700
PB_novel_39039_0	chr7	+	169	1	Intergenic	novelGene_4165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117839993	117840162	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_117840000_117840200
PB_novel_39046_0	chr7	+	176	1	Intergenic	novelGene_4166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGAAATTAG	NA	False	NA	NA	False	NA	NA	NA	118058672	118058848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_118058700_118058800
PB_novel_39054_0	chr7	+	169	1	Intergenic	novelGene_4167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAATACAAAT	NA	False	NA	NA	False	NA	NA	NA	118302100	118302269	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_118302100_118302300
PB_novel_39058_0	chr7	-	174	1	Intergenic	novelGene_4168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACACTAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	118342661	118342487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_118342500_118342700
PB_novel_39059_0	chr7	+	1486	2	NNC	ENSMUSG00000030982.20	novel	2934	24	NA	NA	425	-360	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGCAGGAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	118363771	118365407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr7_+_118364677_118364826
PB_novel_39066_0	chr7	+	174	1	Intergenic	novelGene_4169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119345745	119345919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_119345700_119345900
PB_novel_39079_0	chr7	+	165	1	Intergenic	novelGene_4170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120370212	120370377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_120370200_120370400
PB_novel_39084_0	chr7	-	126	1	Intergenic	novelGene_4171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCTCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120441916	120441790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_120441800_120441900
PB_novel_39090_0	chr7	+	172	1	Intergenic	novelGene_4172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	120603559	120603731	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_120603600_120603700
PB_novel_39091_0	chr7	-	3188	1	Antisense	novelGene_ENSMUSG00000108954.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCCCAC	NA	False	NA	NA	False	AATAAA	-25	NA	120656142	120652954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_120653000_120656100
PB_novel_39092_0	chr7	+	175	1	Intergenic	novelGene_4173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAACTGAA	NA	False	NA	NA	False	NA	NA	NA	120709340	120709515	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_120709300_120709500
PB_novel_39098_0	chr7	+	176	1	Intergenic	novelGene_4174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAACAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121624513	121624689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_121624500_121624700
PB_novel_39101_0	chr7	+	168	1	Intergenic	novelGene_4175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121649925	121650093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_121649900_121650100
PB_novel_39110_0	chr7	+	172	1	Antisense	novelGene_ENSMUSG00000030869.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGTTTAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	121692533	121692705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_121692500_121692700
PB_novel_39116_0	chr7	+	172	1	Intergenic	novelGene_4176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAACAAAACAAC	572	False	NA	NA	False	NA	NA	NA	121739975	121740147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_121740000_121740100
PB_novel_39117_0	chr7	-	171	1	Intergenic	novelGene_4177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	121746754	121746583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_121746600_121746800
PB_novel_39118_0	chr7	+	158	1	Intergenic	novelGene_4178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAATAAATAAATGT	NA	False	NA	NA	False	NA	NA	NA	121755937	121756095	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_121755900_121756100
PB_novel_39122_0	chr7	+	161	1	Intergenic	novelGene_4179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	8227	False	NA	NA	False	NA	NA	NA	122450234	122450395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_122450200_122450400
PB_novel_39123_3	chr7	-	188	1	Intergenic	novelGene_4181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATCTTTAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122566982	122566794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_122566800_122567000
PB_novel_39124_0	chr7	-	175	1	Intergenic	novelGene_4180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	122533890	122533715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_122533700_122533900
PB_novel_39135_0	chr7	+	164	1	Intergenic	novelGene_4182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATATTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122747428	122747592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_122747400_122747600
PB_novel_39142_0	chr7	-	175	1	Intergenic	novelGene_4183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAATAATAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	122836949	122836774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_122836800_122836900
PB_novel_39152_0	chr7	+	175	1	Intergenic	novelGene_4184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	124657999	124658174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_124658000_124658200
PB_novel_39156_0	chr7	-	201	1	Intergenic	novelGene_4185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGAAGATAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	125216631	125216430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_125216400_125216600
PB_novel_39158_0	chr7	+	176	1	Intergenic	novelGene_4186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125672642	125672818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_125672600_125672800
PB_novel_39159_0	chr7	+	178	1	Intergenic	novelGene_4187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAACAAAGG	NA	False	NA	NA	False	NA	NA	NA	125675862	125676040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_125675900_125676000
PB_novel_39161_0	chr7	+	161	1	Intergenic	novelGene_4188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATTAATTAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	125698896	125699057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_125698900_125699100
PB_novel_39164_0	chr7	+	163	2	Antisense	novelGene_ENSMUSG00000108309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAATAAATCTTAATAAA	NA	False	NA	NA	False	NA	NA	NA	125737698	125897153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_125737824_125897115
PB_novel_39166_0	chr7	+	172	1	Intergenic	novelGene_4189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATCTTAAAAAAAAAAAAAA	6878	False	NA	NA	False	NA	NA	NA	125760611	125760783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_125760600_125760800
PB_novel_39167_0	chr7	+	510	2	Antisense	novelGene_ENSMUSG00000000131.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	125793215	125800704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_125793385_125800363
PB_novel_39168_0	chr7	+	171	1	Intergenic	novelGene_4190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGGGAAAAG	8015	False	NA	NA	False	NA	NA	NA	125761748	125761919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_125761700_125761900
PB_novel_39169_0	chr7	-	178	1	Intergenic	novelGene_4191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	309	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	125791367	125791189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_125791200_125791400
PB_novel_39172_0	chr7	-	169	1	Intergenic	novelGene_4192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAACAAAAACC	NA	False	NA	NA	False	NA	NA	NA	125839210	125839041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_125839000_125839200
PB_novel_39174_0	chr7	+	164	1	Intergenic	novelGene_4193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	125840293	125840457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_125840300_125840500
PB_novel_39175_0	chr7	-	176	1	Intergenic	novelGene_4194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	125853991	125853815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_125853800_125854000
PB_novel_39178_0	chr7	+	189	1	Intergenic	novelGene_4195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAAAATTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	125896978	125897167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_125897000_125897200
PB_novel_39185_0	chr7	+	175	1	Intergenic	novelGene_4196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAAGTTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	125948379	125948554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_125948400_125948600
PB_novel_39186_0	chr7	+	176	1	Intergenic	novelGene_4197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATCAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	125951938	125952114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_125951900_125952100
PB_novel_39187_0	chr7	+	176	1	Intergenic	novelGene_4198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	126021683	126021859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_126021700_126021900
PB_novel_39191_0	chr7	-	168	1	Intergenic	novelGene_4199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTGAAGAAGAAGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	126022989	126022821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_126022800_126023000
PB_novel_39195_0	chr7	+	228	1	Intergenic	novelGene_4200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAGGTA	NA	False	NA	NA	False	ATTAAA	-22	NA	126076352	126076580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_126076400_126076600
PB_novel_39197_0	chr7	+	168	1	Intergenic	novelGene_4201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	126085668	126085836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_126085700_126085800
PB_novel_39202_0	chr7	-	174	1	Intergenic	novelGene_4202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	126125780	126125606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_126125600_126125800
PB_novel_39206_0	chr7	+	174	1	Intergenic	novelGene_4203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	126229526	126229700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_126229500_126229700
PB_novel_39208_0	chr7	-	177	1	Intergenic	novelGene_4204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	126242547	126242370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_126242400_126242500
PB_novel_39209_0	chr7	+	182	1	Intergenic	novelGene_4205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAACAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	126243769	126243951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_126243800_126244000
PB_novel_39212_0	chr7	+	160	1	Intergenic	novelGene_4206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAAAATAATTCTTA	839	False	NA	NA	False	NA	NA	NA	126293319	126293479	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_126293300_126293500
PB_novel_39215_0	chr7	-	171	1	Intergenic	novelGene_4207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTAAAAATACGTTAAAAA	9673	False	NA	NA	False	NA	NA	NA	126336031	126335860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_126335900_126336000
PB_novel_39216_0	chr7	-	173	1	Intergenic	novelGene_4208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAAAGTG	8881	False	NA	NA	False	NA	NA	NA	126336823	126336650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_126336600_126336800
PB_novel_39217_0	chr7	-	174	1	Intergenic	novelGene_4209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAGGAAGG	8352	False	NA	NA	False	NA	NA	NA	126343251	126343077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_126343100_126343300
PB_novel_39218_0	chr7	+	192	1	Intergenic	novelGene_4210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATTTAAAAAAAACAAAGAA	NA	False	NA	NA	False	NA	NA	NA	126347310	126347502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_126347300_126347500
PB_novel_39228_0	chr7	-	158	1	Intergenic	novelGene_4211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	126604492	126604334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_126604300_126604500
PB_novel_39229_0	chr7	-	2184	1	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-16	-6657	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7971	False	NA	NA	False	NA	NA	NA	126641597	126639413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_-_126639400_126641600
PB_novel_39230_0	chr7	+	182	1	Intergenic	novelGene_4212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	126643974	126644156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_126644000_126644200
PB_novel_39233_0	chr7	+	177	1	Intergenic	novelGene_4213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	126682669	126682846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_126682700_126682800
PB_novel_39236_1	chr7	+	170	1	Intergenic	novelGene_4214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	126737838	126738008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_126737800_126738000
PB_novel_39237_0	chr7	-	175	1	Intergenic	novelGene_4215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	126759089	126758914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_126758900_126759100
PB_novel_39242_3	chr7	+	3645	1	Antisense	novelGene_ENSMUSG00000042492.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAACCAAAAAAAAAAAA	1942	False	NA	NA	False	NA	NA	NA	126797210	126800855	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_126797200_126800900
PB_novel_39244_0	chr7	+	180	1	Intergenic	novelGene_4216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAGAAAGGAAGT	6815	False	NA	NA	False	NA	NA	NA	126820822	126821002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_126820800_126821000
PB_novel_39248_0	chr7	-	174	1	Intergenic	novelGene_4217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAGACAACAAACAAAACAA	8592	False	NA	NA	False	NA	NA	NA	126867476	126867302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_126867300_126867500
PB_novel_39250_0	chr7	-	172	1	Intergenic	novelGene_4218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAACAAACAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	126886737	126886565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_126886600_126886700
PB_novel_39256_3	chr7	+	176	1	Intergenic	novelGene_4221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	6128	False	NA	NA	False	NA	NA	NA	127057845	127058021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_127057800_127058000
PB_novel_39257_0	chr7	+	176	1	Intergenic	novelGene_4219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	280	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAGAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	127033109	127033285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_127033100_127033300
PB_novel_39258_0	chr7	+	177	1	Intergenic	novelGene_4220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	1245	False	NA	NA	False	NA	NA	NA	127052962	127053139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_127053000_127053100
PB_novel_39259_0	chr7	-	172	1	Intergenic	novelGene_4222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	127058598	127058426	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_127058400_127058600
PB_novel_39262_1	chr7	+	175	1	Intergenic	novelGene_4223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	3673	False	NA	NA	False	NA	NA	NA	127087505	127087680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_127087500_127087700
PB_novel_39266_1	chr7	+	206	1	Intergenic	novelGene_4224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAATAAAGATTTAA	NA	False	NA	NA	False	NA	NA	NA	127107782	127107988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_127107800_127108000
PB_novel_39271_0	chr7	-	210	1	Intergenic	novelGene_4225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACCCTTTTATAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127167995	127167785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_127167800_127168000
PB_novel_39272_2	chr7	-	3410	2	Genic_Genomic	ENSMUSG00000099579.2	novel	546	1	NA	NA	524	5228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAGTAAAAAAAAAAAAAAA	7234	False	NA	NA	False	NA	NA	NA	127203093	127197843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr7_-_127199797_127201636
PB_novel_39272_4	chr7	-	5250	1	FSM	ENSMUSG00000099579.2	ENSMUST00000191038.2	546	1	524	-5228	524	5228	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAGTAAAAAAAAAAAAAAA	7234	False	NA	NA	False	NA	NA	NA	127203093	127197843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_127197800_127203100
PB_novel_39273_0	chr7	-	175	1	Intergenic	novelGene_4226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAATGGTT	2825	False	NA	NA	False	NA	NA	NA	127230354	127230179	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_127230200_127230400
PB_novel_39276_2	chr7	-	175	1	Intergenic	novelGene_4230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAGAAAAGAAAAG	6563	False	NA	NA	False	NA	NA	NA	127339032	127338857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_127338900_127339000
PB_novel_39277_0	chr7	-	294	1	Intergenic	novelGene_4227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	127237411	127237117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_127237100_127237400
PB_novel_39280_0	chr7	+	179	1	Intergenic	novelGene_4228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAGAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	127257691	127257870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_127257700_127257900
PB_novel_39283_1	chr7	-	176	1	Intergenic	novelGene_4229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	4345	False	NA	NA	False	NA	NA	NA	127269740	127269564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_127269600_127269700
PB_novel_39295_0	chr7	-	1684	1	Antisense	novelGene_ENSMUSG00000042308.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127376947	127375263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_127375300_127376900
PB_novel_39297_0	chr7	-	192	1	Intergenic	novelGene_4231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	127428109	127427917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_127427900_127428100
PB_novel_39301_0	chr7	-	176	1	Intergenic	novelGene_4232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAATAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	127437364	127437188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_127437200_127437400
PB_novel_39302_0	chr7	-	201	1	Intergenic	novelGene_4233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAACCAACAAAAAAAGAA	9944	False	NA	NA	False	NA	NA	NA	127438692	127438491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_127438500_127438700
PB_novel_39310_0	chr7	-	168	1	Intergenic	novelGene_4234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTTTAAAAATAATAATA	NA	False	NA	NA	False	NA	NA	NA	127513222	127513054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_127513100_127513200
PB_novel_39311_0	chr7	-	172	1	Antisense	novelGene_ENSMUSG00000030801.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAATAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127513600	127513428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_127513400_127513600
PB_novel_39313_0	chr7	+	165	1	Intergenic	novelGene_4235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAGAAAGAA	8777	False	NA	NA	False	NA	NA	NA	127539004	127539169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_127539000_127539200
PB_novel_39314_0	chr7	+	176	1	Intergenic	novelGene_4236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	330	False	NA	NA	False	NA	NA	NA	127541644	127541820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_127541600_127541800
PB_novel_39315_0	chr7	+	176	1	Intergenic	novelGene_4237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127554752	127554928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_127554800_127554900
PB_novel_39317_0	chr7	-	187	1	Intergenic	novelGene_4238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAGATATTTAAAA	NA	False	NA	NA	False	NA	NA	NA	127565340	127565153	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_127565200_127565300
PB_novel_39330_0	chr7	-	158	1	Intergenic	novelGene_4239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAATAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128172535	128172377	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_128172400_128172500
PB_novel_39331_0	chr7	+	169	1	Intergenic	novelGene_4240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	2886	False	NA	NA	False	NA	NA	NA	128191442	128191611	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_128191400_128191600
PB_novel_39333_0	chr7	+	172	1	Intergenic	novelGene_4241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATTGGCAG	NA	False	NA	NA	False	NA	NA	NA	128285739	128285911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_128285700_128285900
PB_novel_39334_0	chr7	+	732	1	Antisense	novelGene_ENSMUSG00000048170.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128298576	128299308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_128298600_128299300
PB_novel_39338_0	chr7	+	4076	1	Intergenic	novelGene_4242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	128331457	128335533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_128331500_128335500
PB_novel_39340_0	chr7	+	1642	1	Intergenic	novelGene_4243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128339709	128341351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_128339700_128341400
PB_novel_39341_0	chr7	-	176	1	Antisense	novelGene_ENSMUSG00000055319.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	7557	False	NA	NA	False	NA	NA	NA	128386094	128385918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_128385900_128386100
PB_novel_39342_0	chr7	+	161	1	Intergenic	novelGene_4244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAACAAACAAACAAACAT	NA	False	NA	NA	False	NA	NA	NA	128572427	128572588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_128572400_128572600
PB_novel_39350_0	chr7	-	192	1	Intergenic	novelGene_4245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129781973	129781781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_129781800_129782000
PB_novel_39357_1	chr7	+	1042	1	Intergenic	novelGene_4246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130093426	130094468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_130093400_130094500
PB_novel_39359_0	chr7	-	176	1	Intergenic	novelGene_4247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAATCCCAG	NA	False	NA	NA	False	NA	NA	NA	130108187	130108011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_130108000_130108200
PB_novel_39371_0	chr7	-	1900	1	Antisense	novelGene_ENSMUSG00000030852.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130266637	130264737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_130264700_130266600
PB_novel_39378_0	chr7	+	176	1	Intergenic	novelGene_4248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	130419279	130419455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_130419300_130419500
PB_novel_39380_0	chr7	+	177	1	Intergenic	novelGene_4249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130450694	130450871	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_130450700_130450900
PB_novel_39381_0	chr7	-	174	1	Intergenic	novelGene_4250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	5206	False	NA	NA	False	NA	NA	NA	130475234	130475060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_130475100_130475200
PB_novel_39385_0	chr7	-	172	1	Intergenic	novelGene_4251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	130547463	130547291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_130547300_130547500
PB_novel_39391_0	chr7	-	164	1	Intergenic	novelGene_4252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	131256816	131256652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_131256700_131256800
PB_novel_39395_0	chr7	+	194	1	Intergenic	novelGene_4253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAGAAAGTAAAATT	NA	False	NA	NA	False	AATAAA	-7	NA	132088746	132088940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_132088700_132088900
PB_novel_39396_0	chr7	+	177	1	Intergenic	novelGene_4254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATTTTAAAAAAAACACAAA	NA	False	NA	3	True	NA	NA	NA	132143561	132143738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_132143600_132143700
PB_novel_39397_0	chr7	+	168	1	Intergenic	novelGene_4255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132176695	132176863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_132176700_132176900
PB_novel_39398_0	chr7	+	181	1	Intergenic	novelGene_4256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACCAAATCC	NA	False	NA	NA	False	NA	NA	NA	132189695	132189876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_132189700_132189900
PB_novel_39399_0	chr7	+	181	1	Intergenic	novelGene_4257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	132308295	132308476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_132308300_132308500
PB_novel_39406_0	chr7	-	175	1	Intergenic	novelGene_4258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACCTT	NA	False	NA	NA	False	NA	NA	NA	132460188	132460013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_132460000_132460200
PB_novel_39407_0	chr7	-	5525	1	Antisense	novelGene_ENSMUSG00000030965.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGTTAAAAAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	132469613	132464088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_132464100_132469600
PB_novel_39411_0	chr7	-	511	1	ISM	ENSMUSG00000030970.17	ENSMUST00000165457.2	3463	10	27355	62	27113	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATACAAAAAAAAAAAAAAAA	9761	False	NA	2	True	AGTAAA	-9	NA	132589864	132589353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_chr7_-_132589400_132589900
PB_novel_39415_0	chr7	+	3881	1	Intergenic	novelGene_4259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	8908	False	NA	NA	False	NA	NA	NA	132673659	132677540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_132673700_132677500
PB_novel_39420_0	chr7	-	159	1	Intergenic	novelGene_4260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTAAAAAAGAAAACTG	NA	False	NA	NA	False	NA	NA	NA	132749973	132749814	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_132749800_132750000
PB_novel_39435_0	chr7	-	4038	1	Intergenic	novelGene_4261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133620558	133616520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_133616500_133620600
PB_novel_39443_0	chr7	-	6863	1	Antisense	novelGene_ENSMUSG00000058325.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAACCAAAAA	NA	False	NA	NA	False	TATAAA	-28	NA	134344532	134337669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_-_134337700_134344500
PB_novel_39451_0	chr7	+	194	1	Intergenic	novelGene_4262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAGTGAAT	7716	False	NA	NA	False	NA	NA	NA	135404062	135404256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_135404100_135404300
PB_novel_39452_0	chr7	-	188	1	Intergenic	novelGene_4263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAATAAAAAGAAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	135754907	135754719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_135754700_135754900
PB_novel_39455_0	chr7	-	176	1	Intergenic	novelGene_4264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	136475482	136475306	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_136475300_136475500
PB_novel_39466_0	chr7	+	179	1	Intergenic	novelGene_4265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATACT	NA	False	NA	NA	False	NA	NA	NA	137040953	137041132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_137041000_137041100
PB_novel_39467_0	chr7	-	167	1	Intergenic	novelGene_4266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAATAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	137097888	137097721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_137097700_137097900
PB_novel_39472_0	chr7	+	163	1	Intergenic	novelGene_4267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	138355714	138355877	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_138355700_138355900
PB_novel_39474_0	chr7	+	171	1	Intergenic	novelGene_4268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATAAATAAAAAAAGGAGAT	NA	False	NA	NA	False	NA	NA	NA	138401575	138401746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_138401600_138401700
PB_novel_39477_0	chr7	+	174	1	Intergenic	novelGene_4269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAGAAAATAGACTTTTAA	NA	False	NA	NA	False	NA	NA	NA	138439594	138439768	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_138439600_138439800
PB_novel_39479_0	chr7	-	178	1	Intergenic	novelGene_4270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	138507469	138507291	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_138507300_138507500
PB_novel_39483_0	chr7	+	295	1	Intergenic	novelGene_4271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAGAAAGAAACGTAG	NA	False	NA	NA	False	NA	NA	NA	138866406	138866701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_138866400_138866700
PB_novel_39485_0	chr7	-	177	1	Intergenic	novelGene_4272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATGTAGG	NA	False	NA	NA	False	NA	NA	NA	138953849	138953672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_138953700_138953800
PB_novel_39486_0	chr7	+	176	1	Intergenic	novelGene_4273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAATGTGG	NA	False	NA	NA	False	NA	NA	NA	138959102	138959278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_138959100_138959300
PB_novel_39487_0	chr7	+	179	1	Intergenic	novelGene_4274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATTGGCAT	8483	False	NA	NA	False	NA	NA	NA	139078999	139079178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_139079000_139079200
PB_novel_39492_0	chr7	-	160	1	Intergenic	novelGene_4275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATCTTAAAAA	9597	False	NA	NA	False	NA	NA	NA	139573203	139573043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_139573000_139573200
PB_novel_39496_0	chr7	-	171	1	Intergenic	novelGene_4276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAATATTAAAATA	4768	False	NA	NA	False	NA	NA	NA	139655411	139655240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_139655200_139655400
PB_novel_39510_0	chr7	+	182	1	Intergenic	novelGene_4277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAAATAAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	140564193	140564375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_140564200_140564400
PB_novel_39512_0	chr7	+	161	1	Intergenic	novelGene_4278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAATATTT	NA	False	NA	NA	False	NA	NA	NA	140600259	140600420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_140600300_140600400
PB_novel_39516_0	chr7	-	177	1	Intergenic	novelGene_4279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGGAACTACT	NA	False	NA	NA	False	NA	NA	NA	140634358	140634181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_140634200_140634400
PB_novel_39519_0	chr7	+	173	1	Intergenic	novelGene_4280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	140665268	140665441	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_140665300_140665400
PB_novel_39526_2	chr7	+	158	1	Intergenic	novelGene_4281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	140701814	140701972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_140701800_140702000
PB_novel_39527_0	chr7	+	177	1	Intergenic	novelGene_4282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGAGAGAGTTGTG	NA	False	NA	NA	False	NA	NA	NA	140702634	140702811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_140702600_140702800
PB_novel_39529_0	chr7	+	164	1	Intergenic	novelGene_4283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAATAAAAAAATAAA	4101	False	NA	NA	False	NA	NA	NA	140708489	140708653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_140708500_140708700
PB_novel_39539_0	chr7	-	116	1	FSM	ENSMUSG00000110275.2	ENSMUST00000211731.2	580	1	520	-56	520	56	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTGATACTAAAAAAAAAA	2905	False	NA	-27	True	NA	NA	NA	140757857	140757741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr7_-_140757700_140757900
PB_novel_39547_0	chr7	+	160	1	Intergenic	novelGene_4284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAATAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140826051	140826211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_140826100_140826200
PB_novel_39549_0	chr7	+	176	1	Intergenic	novelGene_4285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGATA	2408	False	NA	NA	False	NA	NA	NA	140859830	140860006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_140859800_140860000
PB_novel_39554_0	chr7	+	176	1	Intergenic	novelGene_4286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAGTA	7422	False	NA	NA	False	NA	NA	NA	140928362	140928538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_140928400_140928500
PB_novel_39555_0	chr7	+	173	1	Intergenic	novelGene_4287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAGTGTTTAAACA	NA	False	NA	NA	False	NA	NA	NA	140932083	140932256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_140932100_140932300
PB_novel_39556_0	chr7	+	175	1	Intergenic	novelGene_4288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	140936638	140936813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_140936600_140936800
PB_novel_39566_0	chr7	-	175	1	Intergenic	novelGene_4289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	141122504	141122329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_141122300_141122500
PB_novel_39568_0	chr7	+	176	1	Intergenic	novelGene_4290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	141124982	141125158	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_141125000_141125200
PB_novel_39583_0	chr7	-	173	1	Intergenic	novelGene_4291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAATAAATAAA	2465	False	NA	NA	False	NA	NA	NA	142227510	142227337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_142227300_142227500
PB_novel_39586_0	chr7	-	3417	1	Intergenic	novelGene_4292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATTTAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	142539597	142536180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_142536200_142539600
PB_novel_39592_0	chr7	+	2923	1	Antisense	novelGene_ENSMUSG00000059119.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	192	False	NA	NA	False	NA	NA	NA	143066926	143069849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_143066900_143069800
PB_novel_39593_0	chr7	+	2431	1	Antisense	novelGene_ENSMUSG00000059119.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8736	False	NA	NA	False	NA	NA	NA	143078253	143080684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr7_+_143078300_143080700
PB_novel_39600_0	chr7	-	177	1	Intergenic	novelGene_4293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAACATTTT	NA	False	NA	NA	False	NA	NA	NA	143177714	143177537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_143177500_143177700
PB_novel_39637_0	chr7	+	211	1	Intergenic	novelGene_4294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTTAAAAAAGAACAAGG	NA	False	NA	NA	False	NA	NA	NA	144851642	144851853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_144851600_144851900
PB_novel_39639_0	chr8	+	2121	1	Intergenic	novelGene_987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTCTAAAAAAAAAAAAAAAA	5619	False	NA	NA	False	AATAAA	-11	NA	3317489	3319610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_3317500_3319600
PB_novel_39648_0	chr8	-	157	1	Intergenic	novelGene_988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAGTAAATATTAA	NA	False	NA	NA	False	NA	NA	NA	3535188	3535031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_3535000_3535200
PB_novel_39657_0	chr8	+	175	1	Intergenic	novelGene_989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAAAT	739	False	NA	NA	False	NA	NA	NA	3603113	3603288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_3603100_3603300
PB_novel_39661_0	chr8	+	165	1	Intergenic	novelGene_990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	566	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATTAAA	1185	False	NA	NA	False	NA	NA	NA	3667148	3667313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_3667100_3667300
PB_novel_39664_0	chr8	-	150	1	Intergenic	novelGene_991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	4010438	4010288	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_4010300_4010400
PB_novel_39668_0	chr8	+	177	1	Intergenic	novelGene_992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	4322233	4322410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_4322200_4322400
PB_novel_39672_0	chr8	+	3318	1	Intergenic	novelGene_993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4346460	4349778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_4346500_4349800
PB_novel_39675_0	chr8	-	136	1	Intergenic	novelGene_994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4404627	4404491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_4404500_4404600
PB_novel_39677_0	chr8	-	177	1	Intergenic	novelGene_995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	238	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4432535	4432358	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_4432400_4432500
PB_novel_39680_0	chr8	-	3225	2	Antisense	novelGene_ENSMUSG00000058748.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7868	False	NA	NA	False	NA	NA	NA	4670479	4667030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_4669995_4670218
PB_novel_39705_0	chr8	-	177	1	Intergenic	novelGene_996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAAAGAAGTAT	NA	False	NA	NA	False	NA	NA	NA	10074474	10074297	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_10074300_10074500
PB_novel_39707_0	chr8	+	172	1	Intergenic	novelGene_997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAAAGAATGGG	NA	False	NA	NA	False	NA	NA	NA	10222158	10222330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_10222200_10222300
PB_novel_39715_0	chr8	+	175	1	Intergenic	novelGene_998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	11516788	11516963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_11516800_11517000
PB_novel_39716_0	chr8	+	178	1	Intergenic	novelGene_999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGGATATCAT	NA	False	NA	NA	False	NA	NA	NA	11531297	11531475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_11531300_11531500
PB_novel_39717_0	chr8	+	175	1	Intergenic	novelGene_1000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGTAG	NA	False	NA	NA	False	NA	NA	NA	11538453	11538628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_11538500_11538600
PB_novel_39718_0	chr8	+	172	1	Intergenic	novelGene_1001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGACTTATAAT	NA	False	NA	NA	False	NA	NA	NA	11542549	11542721	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_11542500_11542700
PB_novel_39722_0	chr8	+	175	1	Intergenic	novelGene_1002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAATAAGATAACCC	NA	False	NA	NA	False	NA	NA	NA	11575480	11575655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_11575500_11575700
PB_novel_39724_0	chr8	+	159	1	Intergenic	novelGene_1003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	11594304	11594463	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_11594300_11594500
PB_novel_39754_0	chr8	+	179	1	Intergenic	novelGene_1004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAAAAAAAGAGCA	NA	False	NA	NA	False	NA	NA	NA	12725276	12725455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_12725300_12725500
PB_novel_39763_0	chr8	+	179	1	Intergenic	novelGene_1005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1040	False	NA	NA	False	NA	NA	NA	13201998	13202177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_13202000_13202200
PB_novel_39767_0	chr8	+	185	1	Intergenic	novelGene_1006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAGAGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	13256136	13256321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_13256100_13256300
PB_novel_39768_0	chr8	-	172	1	Intergenic	novelGene_1007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAACAGAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	13262229	13262057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_13262100_13262200
PB_novel_39780_0	chr8	+	177	1	Intergenic	novelGene_1008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAACTTGA	9822	False	NA	NA	False	NA	NA	NA	13801970	13802147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_13802000_13802100
PB_novel_39790_0	chr8	+	177	1	Intergenic	novelGene_1009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATC	2918	False	NA	NA	False	NA	NA	NA	14020336	14020513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_14020300_14020500
PB_novel_39793_0	chr8	-	5157	1	Intergenic	novelGene_1010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACCAAAAGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	14062666	14057509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_14057500_14062700
PB_novel_39794_0	chr8	+	173	1	Intergenic	novelGene_1011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAAAAGAGTTTA	NA	False	NA	NA	False	NA	NA	NA	14057870	14058043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_14057900_14058000
PB_novel_39802_0	chr8	-	301	1	Intergenic	novelGene_1012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	14906410	14906109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_14906100_14906400
PB_novel_39817_0	chr8	+	161	1	Intergenic	novelGene_1013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	18642998	18643159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_18643000_18643200
PB_novel_39820_0	chr8	-	5126	1	Intergenic	novelGene_1014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6193	False	NA	NA	False	NA	NA	NA	18735385	18730259	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_18730300_18735400
PB_novel_39821_0	chr8	+	2416	1	Intergenic	novelGene_1015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-24	NA	18750579	18752995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_18750600_18753000
PB_novel_39828_0	chr8	-	1968	1	Intergenic	novelGene_1016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACCAAAAAAAAAAAAAAAA	6104	False	NA	NA	False	NA	NA	NA	18896168	18894200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_18894200_18896200
PB_novel_39831_1	chr8	+	176	1	Intergenic	novelGene_1017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	18946412	18946588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_18946400_18946600
PB_novel_39835_0	chr8	+	172	1	Intergenic	novelGene_1018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTCTTAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	19046906	19047078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_19046900_19047100
PB_novel_39846_0	chr8	+	4246	2	Genic_Genomic	ENSMUSG00000110669.2	novel	111	1	NA	NA	-12	185934	multi-exon	TRUE	non_canonical	0	0	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACCGAAACAAAACAAGACC	NA	False	NA	NA	False	AATGAA	-18	NA	19834749	20020806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_19834950_20016760
PB_novel_39846_3	chr8	+	4226	1	NIC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	105	-25092	mono-exon	FALSE	NA	NA	NA	NA	NA	573	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAACAAAAAAACCGAAACA	NA	False	NA	NA	False	AATGAA	-8	NA	20016570	20020796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_20016600_20020800
PB_novel_39848_1	chr8	+	2122	1	Intergenic	novelGene_1019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACACCC	NA	False	NA	NA	False	AATGAA	-32	NA	19836884	19839006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_19836900_19839000
PB_novel_39850_0	chr8	+	4245	1	Genic_Genomic	ENSMUSG00000071796.14	novel	NA	NA	NA	NA	-8	-24910	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACCGAAACAAAACAAGACCA	7180	False	NA	NA	False	AATGAA	-19	NA	20143839	20148084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_20143800_20148100
PB_novel_39850_1	chr8	+	4339	2	Fusion	ENSMUSG00000071793.13_ENSMUSG00000071796.14	novel	4659	5	NA	NA	1	-24921	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAACAAAAAAACCGAAACA	NA	False	NA	NA	False	AATGAA	-8	NA	20016466	20148073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr8_+_20016626_20143893
PB_novel_39856_0	chr8	-	179	1	Intergenic	novelGene_1020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTTTAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	20041427	20041248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_20041200_20041400
PB_novel_39864_0	chr8	+	177	1	Intergenic	novelGene_1021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	20071294	20071471	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_20071300_20071500
PB_novel_39868_0	chr8	-	176	1	Intergenic	novelGene_1022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAATGTACTG	NA	False	NA	NA	False	NA	NA	NA	20161212	20161036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_20161000_20161200
PB_novel_39870_0	chr8	-	178	1	Intergenic	novelGene_1023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTTAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	20168675	20168497	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_20168500_20168700
PB_novel_39875_0	chr8	+	193	1	Intergenic	novelGene_1024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAACAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	20181043	20181236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_20181000_20181200
PB_novel_39879_1	chr8	+	4175	1	FSM	ENSMUSG00000110458.2	ENSMUST00000211922.2	111	1	36	-4100	36	4100	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAACAAAAAAAACAAAACA	NA	False	NA	NA	False	AATGAA	-8	NA	20698020	20702195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_+_20698000_20702200
PB_novel_39879_2	chr8	+	2853	2	Genic_Genomic	ENSMUSG00000110458.2	novel	111	1	NA	NA	-20	4096	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAACAAAAAAAACAA	NA	False	NA	NA	False	AATGAA	-4	NA	20697964	20702191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_20698364_20699737
PB_novel_39881_0	chr8	+	179	1	Intergenic	novelGene_1025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	20603756	20603935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_20603800_20603900
PB_novel_39883_0	chr8	+	3427	1	Intergenic	novelGene_1026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAGAAAGGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	20704189	20707616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_20704200_20707600
PB_novel_39886_0	chr8	-	176	1	Intergenic	novelGene_1027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAATGTAC	NA	False	NA	NA	False	NA	NA	NA	20715300	20715124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_20715100_20715300
PB_novel_39887_3	chr8	-	7585	1	Antisense	novelGene_ENSMUSG00000096401.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAATAAATCTAAAA	NA	False	NA	NA	False	AAGAAA	-7	NA	20726283	20718698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_20718700_20726300
PB_novel_39890_0	chr8	+	185	1	Intergenic	novelGene_1028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCTTTAATATATATATAT	NA	False	NA	NA	False	NA	NA	NA	20730812	20730997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_20730800_20731000
PB_novel_39892_0	chr8	+	4229	1	Intergenic	novelGene_1029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAACAAAAAAACCGAAACA	5922	False	NA	NA	False	AATGAA	-8	NA	21090322	21094551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_21090300_21094600
PB_novel_39894_0	chr8	-	176	1	Intergenic	novelGene_1030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAATGTAC	NA	False	NA	NA	False	NA	NA	NA	21110857	21110681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_21110700_21110900
PB_novel_39896_0	chr8	-	179	1	Intergenic	novelGene_1031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTTTAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	21118312	21118133	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_21118100_21118300
PB_novel_39898_0	chr8	+	192	1	Intergenic	novelGene_1032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATATATATATATATAAA	NA	False	NA	NA	False	NA	NA	NA	21125779	21125971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_21125800_21126000
PB_novel_39900_0	chr8	+	181	1	Intergenic	novelGene_1033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAACAAAACCAAAAA	NA	False	NA	NA	False	AATAGA	-12	NA	21130921	21131102	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_21130900_21131100
PB_novel_39901_0	chr8	+	177	1	Intergenic	novelGene_1034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	21148160	21148337	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_21148200_21148300
PB_novel_39905_0	chr8	-	176	1	Intergenic	novelGene_1035	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAGAGAGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	22574493	22574317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_22574300_22574500
PB_novel_39906_0	chr8	+	169	1	Intergenic	novelGene_1036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAATAAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	22611245	22611414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_22611200_22611400
PB_novel_39913_0	chr8	-	160	1	Intergenic	novelGene_1037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	22899019	22898859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_22898900_22899000
PB_novel_39917_0	chr8	+	182	1	Intergenic	novelGene_1038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGAC	7472	False	NA	NA	False	NA	NA	NA	22929755	22929937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_22929800_22929900
PB_novel_39925_0	chr8	+	177	1	Intergenic	novelGene_1039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATTAAAAAAAA	8336	False	NA	NA	False	NA	NA	NA	23093919	23094096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_23093900_23094100
PB_novel_39927_0	chr8	+	186	1	Intergenic	novelGene_1040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGG	4477	False	NA	NA	False	NA	NA	NA	23100109	23100295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_23100100_23100300
PB_novel_39929_0	chr8	+	175	1	Intergenic	novelGene_1041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAATTAAAA	3903	False	NA	NA	False	NA	NA	NA	23136044	23136219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_23136000_23136200
PB_novel_39931_0	chr8	-	180	1	Intergenic	novelGene_1042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	23380930	23380750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_23380800_23380900
PB_novel_39939_0	chr8	-	1424	1	Intergenic	novelGene_1043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23667619	23666195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_23666200_23667600
PB_novel_39941_0	chr8	+	155	1	Intergenic	novelGene_1044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAATAAATAAATCT	NA	False	NA	NA	False	NA	NA	NA	23689224	23689379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_23689200_23689400
PB_novel_39947_0	chr8	+	4661	1	Antisense	novelGene_ENSMUSG00000031546.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACGACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23716894	23721555	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_23716900_23721600
PB_novel_39951_0	chr8	-	171	1	Intergenic	novelGene_1045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	24143627	24143456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_24143500_24143600
PB_novel_39953_0	chr8	-	169	1	Intergenic	novelGene_1046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTGTAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24727203	24727034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_24727000_24727200
PB_novel_39959_0	chr8	+	2304	1	Intergenic	novelGene_1047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1181	False	NA	NA	False	NA	NA	NA	25575249	25577553	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_25575200_25577600
PB_novel_39965_0	chr8	+	167	1	Intergenic	novelGene_1048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAAGAAATAAG	1341	False	NA	NA	False	NA	NA	NA	25689035	25689202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_25689000_25689200
PB_novel_39967_0	chr8	+	176	1	Intergenic	novelGene_1049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCTTTAT	7060	False	NA	NA	False	NA	NA	NA	25701185	25701361	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_25701200_25701400
PB_novel_39977_0	chr8	+	154	1	Intergenic	novelGene_1050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAATAAAACAAATC	955	False	NA	NA	False	NA	NA	NA	25911172	25911326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_25911200_25911300
PB_novel_39985_0	chr8	-	173	1	Intergenic	novelGene_1051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAAAAAGAT	2211	False	NA	NA	False	NA	NA	NA	26117086	26116913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_26116900_26117100
PB_novel_39987_1	chr8	+	126	1	Intergenic	novelGene_1052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAACAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	26176517	26176643	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_26176500_26176600
PB_novel_39991_0	chr8	+	176	1	Intergenic	novelGene_1053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACAAAGTATAT	NA	False	NA	NA	False	NA	NA	NA	26246191	26246367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_26246200_26246400
PB_novel_39993_0	chr8	-	176	1	Intergenic	novelGene_1054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26252939	26252763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_26252800_26252900
PB_novel_39997_0	chr8	+	1469	1	NIC	ENSMUSG00000031574.9	novel	4046	7	NA	NA	2481	1202	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26300982	26302451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_26301000_26302500
PB_novel_40004_0	chr8	+	177	1	Intergenic	novelGene_1055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACAAAAACAACT	NA	False	NA	NA	False	NA	NA	NA	26416134	26416311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_26416100_26416300
PB_novel_40011_0	chr8	-	172	1	Intergenic	novelGene_1056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	26438601	26438429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_26438400_26438600
PB_novel_40015_0	chr8	-	1805	1	NIC	ENSMUSG00000015994.11	novel	1930	9	NA	NA	67	-13220	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26505611	26503806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_26503800_26505600
PB_novel_40017_0	chr8	+	177	1	Antisense	novelGene_ENSMUSG00000037234.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26530009	26530186	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_26530000_26530200
PB_novel_40033_0	chr8	-	195	1	Intergenic	novelGene_1057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	27637068	27636873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_27636900_27637100
PB_novel_40035_0	chr8	-	193	1	Intergenic	novelGene_1058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	27637069	27636876	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_27636900_27637100
PB_novel_40039_1	chr8	-	178	1	Intergenic	novelGene_1064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	426	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	27821696	27821518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_27821500_27821700
PB_novel_40041_0	chr8	+	2779	1	Intergenic	novelGene_1059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-23	NA	27693077	27695856	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_27693100_27695900
PB_novel_40042_0	chr8	+	174	1	Intergenic	novelGene_1060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCTAACTAA	NA	False	NA	NA	False	NA	NA	NA	27699534	27699708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_27699500_27699700
PB_novel_40043_0	chr8	+	181	1	Intergenic	novelGene_1061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGCTTTTTAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	27702438	27702619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_27702400_27702600
PB_novel_40046_0	chr8	+	176	1	Intergenic	novelGene_1062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAACAAAACAACCA	NA	False	NA	NA	False	NA	NA	NA	27746765	27746941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_27746800_27746900
PB_novel_40049_0	chr8	+	175	1	Intergenic	novelGene_1063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATAAAGGGAAG	NA	False	NA	NA	False	NA	NA	NA	27820226	27820401	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_27820200_27820400
PB_novel_40050_0	chr8	-	176	1	Intergenic	novelGene_1065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	27841912	27841736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_27841700_27841900
PB_novel_40052_0	chr8	-	180	1	Intergenic	novelGene_1066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28367717	28367537	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_28367500_28367700
PB_novel_40059_0	chr8	+	169	1	Intergenic	novelGene_1067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTAAAAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	31570663	31570832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_31570700_31570800
PB_novel_40062_0	chr8	-	174	1	Intergenic	novelGene_1068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAGAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	31607033	31606859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_31606900_31607000
PB_novel_40064_0	chr8	-	175	1	Intergenic	novelGene_1069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	31626469	31626294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_31626300_31626500
PB_novel_40068_0	chr8	+	94	1	Intergenic	novelGene_1070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31657752	31657846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_31657800_31657800
PB_novel_40071_0	chr8	-	176	1	Intergenic	novelGene_1071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAACAGA	NA	False	NA	NA	False	NA	NA	NA	32169950	32169774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_32169800_32170000
PB_novel_40089_0	chr8	+	173	1	Intergenic	novelGene_1072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAGAATCAGA	NA	False	NA	NA	False	NA	NA	NA	34002839	34003012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_34002800_34003000
PB_novel_40090_2	chr8	+	342	1	Intergenic	novelGene_1073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	256	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	34035590	34035932	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_34035600_34035900
PB_novel_40095_2	chr8	-	176	1	Intergenic	novelGene_1074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8439	False	NA	NA	False	NA	NA	NA	34128226	34128050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_34128000_34128200
PB_novel_40096_0	chr8	+	2666	1	Intergenic	novelGene_1075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCGTCAAAACTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	34132019	34134685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_34132000_34134700
PB_novel_40105_0	chr8	-	173	1	Intergenic	novelGene_1076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTCA	NA	False	NA	NA	False	NA	NA	NA	34189154	34188981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_34189000_34189200
PB_novel_40111_0	chr8	-	447	1	Antisense	novelGene_ENSMUSG00000031585.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAATCAAATGATA	NA	False	NA	NA	False	NA	NA	NA	34246194	34245747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_34245700_34246200
PB_novel_40114_0	chr8	-	177	1	Intergenic	novelGene_1077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAAATAAAA	3378	False	NA	NA	False	NA	NA	NA	34257172	34256995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_34257000_34257200
PB_novel_40123_0	chr8	+	164	1	Intergenic	novelGene_1078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAATTAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	34383258	34383422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_34383300_34383400
PB_novel_40125_1	chr8	+	176	1	Intergenic	novelGene_1080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34422672	34422848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_34422700_34422800
PB_novel_40127_0	chr8	+	170	1	Intergenic	novelGene_1079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	34411289	34411459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_34411300_34411500
PB_novel_40133_0	chr8	+	164	1	Intergenic	novelGene_1081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAATGAGTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	34446407	34446571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_34446400_34446600
PB_novel_40139_0	chr8	-	176	1	Intergenic	novelGene_1083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34532037	34531861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_34531900_34532000
PB_novel_40140_0	chr8	+	174	1	Intergenic	novelGene_1082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAACAAACAAACAAATAA	NA	False	NA	NA	False	NA	NA	NA	34467451	34467625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_34467500_34467600
PB_novel_40164_0	chr8	+	167	1	Intergenic	novelGene_1084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	35335707	35335874	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_35335700_35335900
PB_novel_40169_0	chr8	+	175	1	Intergenic	novelGene_1085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTTTTTAAAAAAGAAAAA	9680	False	NA	NA	False	NA	NA	NA	35630476	35630651	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_35630500_35630700
PB_novel_40173_0	chr8	-	178	1	Intergenic	novelGene_1086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAAAGAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	35863729	35863551	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_35863600_35863700
PB_novel_40180_0	chr8	-	147	1	Intergenic	novelGene_1087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTATGTATAATAATAAATA	NA	False	NA	NA	False	NA	NA	NA	36391127	36390980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_36391000_36391100
PB_novel_40189_0	chr8	-	1639	1	Intergenic	novelGene_1088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37048798	37047159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_37047200_37048800
PB_novel_40191_0	chr8	-	3148	1	NIC	ENSMUSG00000031523.17	novel	6159	14	NA	NA	0	-17496	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37081028	37077880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_37077900_37081000
PB_novel_40192_0	chr8	-	173	1	Intergenic	novelGene_1089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAGAAGAAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	37103440	37103267	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_37103300_37103400
PB_novel_40197_0	chr8	-	177	1	Intergenic	novelGene_1090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	38609541	38609364	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_38609400_38609500
PB_novel_40209_0	chr8	-	4044	1	Intergenic	novelGene_1091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACCAAAAAAAATTAGC	8786	False	NA	NA	False	NA	NA	NA	41033136	41029092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_41029100_41033100
PB_novel_40220_0	chr8	+	171	1	Intergenic	novelGene_1092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTTTCTAAAAAAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	41551699	41551870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_41551700_41551900
PB_novel_40224_0	chr8	-	166	1	Intergenic	novelGene_1093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	41627357	41627191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_41627200_41627400
PB_novel_40225_0	chr8	-	187	1	Intergenic	novelGene_1094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	41629012	41628825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_41628800_41629000
PB_novel_40234_0	chr8	-	177	1	Intergenic	novelGene_1095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGTGTAA	NA	False	NA	NA	False	NA	NA	NA	41783223	41783046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_41783000_41783200
PB_novel_40236_0	chr8	-	2260	1	Intergenic	novelGene_1096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41791328	41789068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_41789100_41791300
PB_novel_40246_0	chr8	-	167	1	Intergenic	novelGene_1097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAATTA	1761	False	NA	NA	False	NA	NA	NA	43602034	43601867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_43601900_43602000
PB_novel_40252_0	chr8	+	176	1	Intergenic	novelGene_1098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	43698901	43699077	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_43698900_43699100
PB_novel_40254_0	chr8	+	4530	2	Intergenic	novelGene_1099	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	1	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43715528	43720312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_43719564_43719817
PB_novel_40255_0	chr8	-	218	1	Intergenic	novelGene_1100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	43719812	43719594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_43719600_43719800
PB_novel_40267_0	chr8	-	191	1	Intergenic	novelGene_1101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAAAATATATATA	NA	False	NA	NA	False	NA	NA	NA	43846693	43846502	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_43846500_43846700
PB_novel_40281_0	chr8	+	3449	1	NIC	ENSMUSG00000031634.14	novel	1640	12	NA	NA	6732	387	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAAGGAAAGGAA	2325	False	NA	NA	False	NA	NA	NA	46435346	46438795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_46435300_46438800
PB_novel_40288_0	chr8	+	185	1	Intergenic	novelGene_1102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGAAAACAGTCAT	NA	False	NA	NA	False	NA	NA	NA	46666122	46666307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_46666100_46666300
PB_novel_40291_0	chr8	-	164	1	Intergenic	novelGene_1103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTTGAAAAAAAAAAAG	3649	False	NA	NA	False	NA	NA	NA	46761411	46761247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_46761200_46761400
PB_novel_40301_0	chr8	-	176	1	Intergenic	novelGene_1104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAGAAGAAG	8236	False	NA	NA	False	NA	NA	NA	47157850	47157674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_47157700_47157800
PB_novel_40303_0	chr8	-	182	1	Intergenic	novelGene_1105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47189625	47189443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_47189400_47189600
PB_novel_40310_0	chr8	-	163	1	Intergenic	novelGene_1106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	47788535	47788372	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_47788400_47788500
PB_novel_40312_0	chr8	-	172	1	Intergenic	novelGene_1107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCCTTTAAAAAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	47826248	47826076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_47826100_47826200
PB_novel_40321_0	chr8	+	238	1	Intergenic	novelGene_1108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTTTAAAAGAAAAGAAA	5004	False	NA	NA	False	NA	NA	NA	48141153	48141391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_48141200_48141400
PB_novel_40322_0	chr8	+	172	1	Intergenic	novelGene_1109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	48159086	48159258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_48159100_48159300
PB_novel_40329_0	chr8	-	196	1	Intergenic	novelGene_1110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTTAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	48218474	48218278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_48218300_48218500
PB_novel_40330_0	chr8	-	187	1	Intergenic	novelGene_1111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAGAAAAAGAGGCAGA	NA	False	NA	NA	False	NA	NA	NA	48229304	48229117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_48229100_48229300
PB_novel_40362_0	chr8	-	3367	1	Intergenic	novelGene_1112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGGTAGAAC	NA	False	NA	NA	False	NA	NA	NA	49296329	49292962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_49293000_49296300
PB_novel_40368_0	chr8	-	165	1	Intergenic	novelGene_1113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATTAACCTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50809986	50809821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_50809800_50810000
PB_novel_40380_0	chr8	+	3486	1	Genic_Genomic	ENSMUSG00000031520.7	novel	NA	NA	NA	NA	-393	-88346	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	628	False	NA	NA	False	NA	NA	NA	54530247	54533733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_54530200_54533700
PB_novel_40383_0	chr8	+	172	1	Intergenic	novelGene_1114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	56366545	56366717	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_56366500_56366700
PB_novel_40389_0	chr8	+	172	1	Intergenic	novelGene_1115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	57079835	57080007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_57079800_57080000
PB_novel_40391_0	chr8	+	177	1	Intergenic	novelGene_1116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	57903538	57903715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_57903500_57903700
PB_novel_40392_0	chr8	+	158	1	Intergenic	novelGene_1117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	57916550	57916708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_57916600_57916700
PB_novel_40412_0	chr8	-	177	1	Intergenic	novelGene_1118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	60971182	60971005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_60971000_60971200
PB_novel_40414_0	chr8	+	175	1	Intergenic	novelGene_1119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7160	False	NA	NA	False	NA	NA	NA	61137697	61137872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_61137700_61137900
PB_novel_40417_0	chr8	+	179	1	Intergenic	novelGene_1120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAACCGAA	NA	False	NA	NA	False	NA	NA	NA	61530686	61530865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_61530700_61530900
PB_novel_40419_0	chr8	+	174	1	Intergenic	novelGene_1121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTTTTAAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61879993	61880167	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_61880000_61880200
PB_novel_40425_0	chr8	+	177	1	Intergenic	novelGene_1122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAATATA	NA	False	NA	NA	False	NA	NA	NA	62803479	62803656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_62803500_62803700
PB_novel_40433_0	chr8	+	175	1	Antisense	novelGene_ENSMUSG00000031604.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	65179820	65179995	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_65179800_65180000
PB_novel_40434_0	chr8	+	172	1	Intergenic	novelGene_1123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65208485	65208657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_65208500_65208700
PB_novel_40447_0	chr8	-	176	1	Intergenic	novelGene_1124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	65526156	65525980	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_65526000_65526200
PB_novel_40450_1	chr8	-	175	1	Intergenic	novelGene_1125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	246	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	66227216	66227041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_66227000_66227200
PB_novel_40451_0	chr8	+	163	1	Intergenic	novelGene_1126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTAAAAAAAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	66373265	66373428	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_66373300_66373400
PB_novel_40457_0	chr8	-	394	1	Intergenic	novelGene_1127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-29	NA	67348213	67347819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_67347800_67348200
PB_novel_40460_0	chr8	-	176	1	Intergenic	novelGene_1128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATAGGTGCTA	NA	False	NA	NA	False	NA	NA	NA	68260039	68259863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_68259900_68260000
PB_novel_40462_0	chr8	+	188	1	Intergenic	novelGene_1129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	68510814	68511002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_68510800_68511000
PB_novel_40466_0	chr8	+	173	1	Intergenic	novelGene_1130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAATTAAA	NA	False	NA	NA	False	NA	NA	NA	68959194	68959367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_68959200_68959400
PB_novel_40467_0	chr8	-	171	1	Intergenic	novelGene_1131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAATTAAAG	6673	False	NA	NA	False	NA	NA	NA	69013173	69013002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_69013000_69013200
PB_novel_40468_0	chr8	-	176	1	Intergenic	novelGene_1132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	340	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAATACTAAAAA	NA	False	NA	NA	False	NA	NA	NA	69274247	69274071	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_69274100_69274200
PB_novel_40478_0	chr8	+	172	1	Intergenic	novelGene_1133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69539275	69539447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_69539300_69539400
PB_novel_40484_0	chr8	-	4315	1	Intergenic	novelGene_1134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69675857	69671542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_69671500_69675900
PB_novel_40487_0	chr8	-	175	1	Intergenic	novelGene_1135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69732314	69732139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_69732100_69732300
PB_novel_40506_0	chr8	-	177	1	Intergenic	novelGene_1136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAAAAGAAGAGA	7902	False	NA	NA	False	NA	NA	NA	70131328	70131151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_70131200_70131300
PB_novel_40523_0	chr8	+	172	1	Intergenic	novelGene_1137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTTAAAAAAAAAAAAAAAG	7225	False	NA	NA	False	NA	NA	NA	70384039	70384211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_70384000_70384200
PB_novel_40524_0	chr8	+	131	1	Intergenic	novelGene_1138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAACCAAAACA	7550	False	NA	NA	False	NA	NA	NA	70384364	70384495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_70384400_70384500
PB_novel_40531_0	chr8	-	171	1	Intergenic	novelGene_1139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	70459372	70459201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_70459200_70459400
PB_novel_40532_0	chr8	+	169	1	Intergenic	novelGene_1140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAGAAAAAGAACAAAATA	NA	False	NA	NA	False	NA	NA	NA	70460477	70460646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_70460500_70460600
PB_novel_40540_0	chr8	-	175	1	Intergenic	novelGene_1141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAGAAAAAA	9210	False	NA	NA	False	NA	NA	NA	70513964	70513789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_70513800_70514000
PB_novel_40551_0	chr8	+	169	1	Intergenic	novelGene_1142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAATTAAAAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	70632524	70632693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_70632500_70632700
PB_novel_40552_0	chr8	-	203	1	Intergenic	novelGene_1143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	70679783	70679580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_70679600_70679800
PB_novel_40567_0	chr8	+	463	1	Antisense	novelGene_ENSMUSG00000090137.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	70963166	70963629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_70963200_70963600
PB_novel_40569_0	chr8	+	177	1	Intergenic	novelGene_1144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATATTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70969774	70969951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_70969800_70970000
PB_novel_40572_0	chr8	-	2011	1	Intergenic	novelGene_1145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	71000385	70998374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_70998400_71000400
PB_novel_40575_0	chr8	-	177	1	Intergenic	novelGene_1146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATTAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	71032489	71032312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_71032300_71032500
PB_novel_40576_0	chr8	-	170	1	Intergenic	novelGene_1147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	71069149	71068979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_71069000_71069100
PB_novel_40577_0	chr8	-	186	1	Intergenic	novelGene_1148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTACTTTATAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	71072984	71072798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_71072800_71073000
PB_novel_40578_0	chr8	-	177	1	Intergenic	novelGene_1149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATCCT	5517	False	NA	NA	False	NA	NA	NA	71080243	71080066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_71080100_71080200
PB_novel_40580_0	chr8	+	174	1	Intergenic	novelGene_1150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	71088689	71088863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_71088700_71088900
PB_novel_40581_0	chr8	+	172	1	Intergenic	novelGene_1151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	71093904	71094076	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_71093900_71094100
PB_novel_40583_0	chr8	-	178	1	Intergenic	novelGene_1152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAACCAACAA	NA	False	NA	NA	False	NA	NA	NA	71120620	71120442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_71120400_71120600
PB_novel_40584_0	chr8	-	176	1	Intergenic	novelGene_1153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGGAGTG	NA	False	NA	NA	False	NA	NA	NA	71122190	71122014	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_71122000_71122200
PB_novel_40585_0	chr8	+	3578	1	NIC	ENSMUSG00000031848.16	novel	925	5	NA	NA	19	-1135	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	71126053	71129631	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_71126100_71129600
PB_novel_40595_0	chr8	-	162	1	Intergenic	novelGene_1154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATAAATAAACCT	8560	False	NA	NA	False	NA	NA	NA	71264587	71264425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_71264400_71264600
PB_novel_40596_0	chr8	-	174	1	Intergenic	novelGene_1155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	71280163	71279989	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_71280000_71280200
PB_novel_40603_0	chr8	+	170	1	Intergenic	novelGene_1156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	71325014	71325184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_71325000_71325200
PB_novel_40605_0	chr8	+	176	1	Intergenic	novelGene_1157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAGAAAA	3617	False	NA	NA	False	NA	NA	NA	71334344	71334520	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_71334300_71334500
PB_novel_40608_0	chr8	+	173	1	Intergenic	novelGene_1158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	3189	False	NA	NA	False	NA	NA	NA	71375017	71375190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_71375000_71375200
PB_novel_40610_0	chr8	-	176	1	Intergenic	novelGene_1159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAATACCA	5168	False	NA	NA	False	NA	NA	NA	71698365	71698189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_71698200_71698400
PB_novel_40621_1	chr8	+	176	1	Intergenic	novelGene_1160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	71981955	71982131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_71982000_71982100
PB_novel_40635_0	chr8	-	178	1	Intergenic	novelGene_1161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAGAAGAA	4056	False	NA	NA	False	NA	NA	NA	72158898	72158720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_72158700_72158900
PB_novel_40655_0	chr8	-	176	1	Intergenic	novelGene_1162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAATTAACAAC	NA	False	NA	NA	False	NA	NA	NA	72893159	72892983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_72893000_72893200
PB_novel_40661_0	chr8	-	177	1	Intergenic	novelGene_1163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATCTAGAAAAGC	789	False	NA	NA	False	NA	NA	NA	72997557	72997380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_72997400_72997600
PB_novel_40663_0	chr8	+	179	1	Intergenic	novelGene_1164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	876	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAATAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	73031871	73032050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_73031900_73032000
PB_novel_40664_0	chr8	+	176	1	Intergenic	novelGene_1165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	73052048	73052224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_73052000_73052200
PB_novel_40665_0	chr8	-	170	1	Intergenic	novelGene_1169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATCTAAAAAAAAAAAAAAA	9393	False	NA	NA	False	NA	NA	NA	73198319	73198149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_73198100_73198300
PB_novel_40672_0	chr8	+	3327	1	Intergenic	novelGene_1166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-36	NA	73101520	73104847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_73101500_73104800
PB_novel_40679_0	chr8	-	177	1	Intergenic	novelGene_1167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	73176467	73176290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_73176300_73176500
PB_novel_40680_0	chr8	-	130	1	Intergenic	novelGene_1168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73197083	73196953	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_73197000_73197100
PB_novel_40683_0	chr8	+	177	1	Intergenic	novelGene_1170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	73226202	73226379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_73226200_73226400
PB_novel_40685_0	chr8	+	3905	1	Antisense	novelGene_ENSMUSG00000019731.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73235479	73239384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_73235500_73239400
PB_novel_40700_0	chr8	+	176	1	Intergenic	novelGene_1171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAGGAAAATA	NA	False	NA	NA	False	NA	NA	NA	73678660	73678836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_73678700_73678800
PB_novel_40701_0	chr8	+	3986	1	Intergenic	novelGene_1172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73720990	73724976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_73721000_73725000
PB_novel_40707_0	chr8	-	175	1	Intergenic	novelGene_1173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	74339250	74339075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_74339100_74339200
PB_novel_40709_0	chr8	-	174	1	Intergenic	novelGene_1174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAACAACAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75660459	75660285	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_75660300_75660500
PB_novel_40713_0	chr8	-	178	1	Intergenic	novelGene_1175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACAAAGTAGC	NA	False	NA	NA	False	NA	NA	NA	75736141	75735963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_75736000_75736100
PB_novel_40715_0	chr8	+	176	1	Intergenic	novelGene_1176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAGGAAAGT	NA	False	NA	NA	False	NA	NA	NA	75747647	75747823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_75747600_75747800
PB_novel_40724_0	chr8	+	171	1	Intergenic	novelGene_1177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATTAAATAAAC	4411	False	NA	NA	False	NA	NA	NA	78217742	78217913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_78217700_78217900
PB_novel_40747_0	chr8	+	156	1	Intergenic	novelGene_1178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAGAAAAACTA	NA	False	NA	NA	False	NA	NA	NA	79136234	79136390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_79136200_79136400
PB_novel_40749_0	chr8	+	176	1	Intergenic	novelGene_1179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAACTG	NA	False	NA	NA	False	NA	NA	NA	79142941	79143117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_79142900_79143100
PB_novel_40755_0	chr8	-	177	1	Intergenic	novelGene_1180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGTGGG	NA	False	NA	NA	False	NA	NA	NA	79249236	79249059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_79249100_79249200
PB_novel_40758_0	chr8	-	5669	1	Intergenic	novelGene_1181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATACAAAAAAAAAAGGATCC	6340	False	NA	NA	False	AGTAAA	-40	NA	79288604	79282935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_79282900_79288600
PB_novel_40766_0	chr8	-	188	1	Intergenic	novelGene_1182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79601089	79600901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_79600900_79601100
PB_novel_40767_0	chr8	+	175	1	Genic_Genomic	ENSMUSG00000071064.16	novel	NA	NA	NA	NA	-174	-43400	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATTAAAAAAAAAAAA	4872	False	NA	NA	False	NA	NA	NA	79754891	79755066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_79754900_79755100
PB_novel_40769_0	chr8	-	172	1	Intergenic	novelGene_1183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	340	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79940754	79940582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_79940600_79940800
PB_novel_40770_0	chr8	+	204	1	Intergenic	novelGene_1184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	351	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80334433	80334637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_80334400_80334600
PB_novel_40773_0	chr8	+	171	1	Intergenic	novelGene_1185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACTCTTA	NA	False	NA	NA	False	NA	NA	NA	80359180	80359351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_80359200_80359400
PB_novel_40774_0	chr8	+	176	1	Intergenic	novelGene_1186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAACAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	80363708	80363884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_80363700_80363900
PB_novel_40776_0	chr8	+	4103	1	NIC	ENSMUSG00000036990.14	novel	7354	21	NA	NA	2972	-404	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	80381342	80385445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_80381300_80385400
PB_novel_40782_0	chr8	-	2503	1	Genic_Genomic	ENSMUSG00000110202.2	novel	NA	NA	NA	NA	-111	-2755	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80479153	80476650	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_80476600_80479200
PB_novel_40783_0	chr8	-	175	1	Intergenic	novelGene_1187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAGAGAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	80509934	80509759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_80509800_80509900
PB_novel_40788_0	chr8	+	174	1	Intergenic	novelGene_1188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	81169104	81169278	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_81169100_81169300
PB_novel_40791_0	chr8	+	176	1	Intergenic	novelGene_1189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACACACATA	NA	False	NA	NA	False	NA	NA	NA	81536686	81536862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_81536700_81536900
PB_novel_40799_0	chr8	+	168	1	Intergenic	novelGene_1190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAGAGAGATAG	NA	False	NA	NA	False	NA	NA	NA	81724191	81724359	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_81724200_81724400
PB_novel_40807_0	chr8	-	174	1	Intergenic	novelGene_1191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAACAAAACAAAATAAAAC	NA	False	NA	NA	False	NA	NA	NA	83790454	83790280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_83790300_83790500
PB_novel_40811_0	chr8	-	173	1	Intergenic	novelGene_1192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84286763	84286590	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_84286600_84286800
PB_novel_40813_0	chr8	+	4770	2	Antisense	novelGene_ENSMUSG00000031708.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGGGGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84315077	84319985	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_84317700_84317837
PB_novel_40819_0	chr8	-	176	1	Intergenic	novelGene_1193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACCAAGTTAT	NA	False	NA	NA	False	NA	NA	NA	84437752	84437576	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_84437600_84437800
PB_novel_40824_0	chr8	+	171	1	Intergenic	novelGene_1194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAATGTAATAAAATT	NA	False	NA	NA	False	NA	NA	NA	84578359	84578530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_84578400_84578500
PB_novel_40826_0	chr8	-	172	1	Intergenic	novelGene_1195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATCAGAAAGCA	2004	False	NA	NA	False	NA	NA	NA	84585623	84585451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_84585500_84585600
PB_novel_40830_0	chr8	+	178	1	Intergenic	novelGene_1196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGACTTTGA	NA	False	NA	NA	False	NA	NA	NA	84612786	84612964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_84612800_84613000
PB_novel_40831_0	chr8	-	3909	4	Antisense	novelGene_ENSMUSG00000013033.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAGTATAAAAAAAAAAAAAA	9899	False	NA	NA	False	TTTAAA	-21	NA	84652951	84627344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_84627551_84642032_84642196_84645446_84645661_84649625
PB_novel_40834_0	chr8	+	3100	2	NNC	ENSMUSG00000005470.9	novel	369	3	NA	NA	-6	-8817	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	5917	False	NA	NA	False	NA	NA	NA	84682336	84685659	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_+_84685147_84685369
PB_novel_40835_0	chr8	-	180	1	Intergenic	novelGene_1198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTGAG	9583	False	NA	NA	False	NA	NA	NA	84785736	84785556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_84785600_84785700
PB_novel_40838_0	chr8	-	176	1	Intergenic	novelGene_1197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	9483	False	NA	NA	False	NA	NA	NA	84712320	84712144	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_84712100_84712300
PB_novel_40839_0	chr8	+	188	1	Intergenic	novelGene_1199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	84786505	84786693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_84786500_84786700
PB_novel_40850_0	chr8	+	177	1	Intergenic	novelGene_1200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAGAAAGAAA	8700	False	NA	NA	False	NA	NA	NA	84922130	84922307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_84922100_84922300
PB_novel_40856_0	chr8	-	172	1	Intergenic	novelGene_1201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCTTAAAAAAAAAAAAGAA	8602	False	NA	NA	False	NA	NA	NA	84970114	84969942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_84969900_84970100
PB_novel_40858_0	chr8	-	1960	1	NIC	ENSMUSG00000004994.13	novel	2119	10	NA	NA	-1	-4228	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	84996997	84995037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_84995000_84997000
PB_novel_40859_0	chr8	+	174	1	Intergenic	novelGene_1202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGAGTT	2463	False	NA	NA	False	NA	NA	NA	85029338	85029512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_85029300_85029500
PB_novel_40869_0	chr8	-	170	1	Intergenic	novelGene_1203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGAGAGAGAAAGC	NA	False	NA	NA	False	NA	NA	NA	85352568	85352398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_85352400_85352600
PB_novel_40871_0	chr8	+	178	1	Intergenic	novelGene_1204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	489	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATATATGGTTATAA	NA	False	NA	NA	False	NA	NA	NA	85371011	85371189	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_85371000_85371200
PB_novel_40872_0	chr8	+	133	1	Intergenic	novelGene_1205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85376007	85376140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_85376000_85376100
PB_novel_40873_0	chr8	+	174	1	Intergenic	novelGene_1206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	85378462	85378636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_85378500_85378600
PB_novel_40875_0	chr8	+	2507	1	Intergenic	novelGene_1207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85382573	85385080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_85382600_85385100
PB_novel_40880_0	chr8	-	163	1	Antisense	novelGene_ENSMUSG00000001909.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATCTAAAAAAAAAA	7070	False	NA	NA	False	NA	NA	NA	85418627	85418464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_85418500_85418600
PB_novel_40893_0	chr8	-	175	1	Intergenic	novelGene_1208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTCA	NA	False	NA	NA	False	NA	NA	NA	85612482	85612307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_85612300_85612500
PB_novel_40897_0	chr8	+	171	1	Intergenic	novelGene_1209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	85630689	85630860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_85630700_85630900
PB_novel_40901_0	chr8	+	181	1	Intergenic	novelGene_1210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAGAAAGAAATAAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	85653441	85653622	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_85653400_85653600
PB_novel_40902_0	chr8	-	177	1	Intergenic	novelGene_1211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	85666947	85666770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_85666800_85666900
PB_novel_40906_1	chr8	-	177	1	Intergenic	novelGene_1212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	85723426	85723249	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_85723200_85723400
PB_novel_40907_0	chr8	-	2366	2	NNC	ENSMUSG00000111184.2	novel	339	2	NA	NA	-112	543	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACAAAACAACCCCCC	4749	False	NA	NA	False	NA	NA	NA	85696174	85693763	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr8_-_85695012_85695056
PB_novel_40911_0	chr8	-	2072	1	Antisense	novelGene_ENSMUSG00000052566.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	85717520	85715448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_85715400_85717500
PB_novel_40925_0	chr8	+	158	1	Intergenic	novelGene_1213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATTAATTAATT	NA	False	NA	NA	False	NA	NA	NA	85834403	85834561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_85834400_85834600
PB_novel_40926_0	chr8	+	179	1	Intergenic	novelGene_1214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATTCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	85839211	85839390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_85839200_85839400
PB_novel_40929_0	chr8	+	173	1	Intergenic	novelGene_1216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	85875475	85875648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_85875500_85875600
PB_novel_40936_0	chr8	+	169	1	Intergenic	novelGene_1217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTTTAAAATT	NA	False	NA	NA	False	NA	NA	NA	86149087	86149256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_86149100_86149300
PB_novel_40939_0	chr8	+	175	1	Intergenic	novelGene_1218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAGAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	86171566	86171741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_86171600_86171700
PB_novel_40940_0	chr8	+	175	1	Intergenic	novelGene_1219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGGAATC	NA	False	NA	NA	False	NA	NA	NA	86179603	86179778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_86179600_86179800
PB_novel_40944_1	chr8	+	169	1	Intergenic	novelGene_1220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAATTTAAAGATCA	NA	False	NA	-8	True	NA	NA	NA	86198383	86198552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_86198400_86198600
PB_novel_40946_0	chr8	+	163	1	Intergenic	novelGene_1221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTTTAAAAATATATTAAA	1088	False	NA	NA	False	NA	NA	NA	86210120	86210283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_86210100_86210300
PB_novel_40947_0	chr8	-	176	1	Intergenic	novelGene_1222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	86213282	86213106	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_86213100_86213300
PB_novel_40949_0	chr8	+	3310	1	Intergenic	novelGene_1223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACCAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	86221784	86225094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_86221800_86225100
PB_novel_40961_0	chr8	-	177	1	Intergenic	novelGene_1224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	86433539	86433362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_86433400_86433500
PB_novel_40963_0	chr8	+	2875	1	NIC	ENSMUSG00000036879.16	novel	451	5	NA	NA	5076	-28724	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86574755	86577630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_86574800_86577600
PB_novel_40967_0	chr8	-	4150	2	Antisense	novelGene_ENSMUSG00000036879.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAATAAAAAATAAA	4414	False	NA	NA	False	NA	NA	NA	86760254	86756065	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_86757808_86757846
PB_novel_40971_0	chr8	+	157	1	Intergenic	novelGene_1225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	87310143	87310300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_87310100_87310300
PB_novel_40973_0	chr8	-	176	1	Intergenic	novelGene_1226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAATATTA	NA	False	NA	NA	False	NA	NA	NA	87387215	87387039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_87387000_87387200
PB_novel_40982_0	chr8	-	4832	1	NIC	ENSMUSG00000031652.12	novel	6469	7	NA	NA	8	-36100	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87611878	87607046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_87607000_87611900
PB_novel_40983_0	chr8	+	169	1	Intergenic	novelGene_1227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCTTTAAAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	87610233	87610402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_87610200_87610400
PB_novel_40992_0	chr8	-	173	1	Intergenic	novelGene_1228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	320	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2398	False	NA	NA	False	NA	NA	NA	88633759	88633586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_88633600_88633800
PB_novel_40996_1	chr8	+	177	1	Intergenic	novelGene_1229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAATTCA	4327	False	NA	NA	False	NA	NA	NA	88810851	88811028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_88810900_88811000
PB_novel_41003_0	chr8	-	174	1	Intergenic	novelGene_1230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	88873744	88873570	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_88873600_88873700
PB_novel_41004_0	chr8	-	175	1	Intergenic	novelGene_1231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88881272	88881097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_88881100_88881300
PB_novel_41005_1	chr8	-	175	1	Intergenic	novelGene_1232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88892421	88892246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_88892200_88892400
PB_novel_41009_3	chr8	-	178	1	Intergenic	novelGene_1236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATGTTTAAAAAA	1926	False	NA	NA	False	NA	NA	NA	89013753	89013575	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_89013600_89013800
PB_novel_41009_6	chr8	-	177	1	Intergenic	novelGene_1235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88937078	88936901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_88936900_88937100
PB_novel_41010_0	chr8	+	193	1	Intergenic	novelGene_1233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	88914064	88914257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_88914100_88914300
PB_novel_41013_0	chr8	+	173	1	Intergenic	novelGene_1234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	88918710	88918883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_88918700_88918900
PB_novel_41023_0	chr8	+	177	1	Intergenic	novelGene_1237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATCAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	89661696	89661873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_89661700_89661900
PB_novel_41027_0	chr8	-	4096	1	NIC	ENSMUSG00000031665.8	novel	5265	4	NA	NA	1311	-11521	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAAACAAACAAATA	NA	False	NA	NA	False	AATGAA	-10	NA	89769479	89765383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_89765400_89769500
PB_novel_41029_13	chr8	-	2322	5	Intergenic	novelGene_1241	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	63	junction_4	28.6574597618142	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAAAATAAACCC	NA	False	NA	NA	False	NA	NA	NA	89779665	89772282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_89774095_89774349_89774422_89775330_89775532_89776215_89776356_89779568
PB_novel_41029_21	chr8	-	2631	4	Intergenic	novelGene_1239	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	120	junction_2	10.1980390271856	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAAAATAAACCC	NA	False	NA	NA	False	NA	NA	NA	89779659	89772282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_89774422_89775330_89775532_89776215_89776356_89779508
PB_novel_41029_5	chr8	-	2376	5	Intergenic	novelGene_1240	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	69	junction_1	27.8511669414407	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAAAATAAACCC	NA	False	NA	NA	False	NA	NA	NA	89779659	89772282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_89774095_89774349_89774422_89775330_89775532_89776215_89776356_89779508
PB_novel_41030_0	chr8	-	931	1	Intergenic	novelGene_1238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAAAATAAACCC	NA	False	NA	NA	False	NA	NA	NA	89773213	89772282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_89772300_89773200
PB_novel_41045_0	chr8	-	174	1	Intergenic	novelGene_1242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	425	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAGTATAATGAA	NA	False	NA	NA	False	NA	NA	NA	91554536	91554362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_91554400_91554500
PB_novel_41046_0	chr8	+	159	1	Intergenic	novelGene_1243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	91575075	91575234	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_91575100_91575200
PB_novel_41048_0	chr8	-	169	1	Intergenic	novelGene_1244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTTAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	91676028	91675859	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_91675900_91676000
PB_novel_41050_0	chr8	-	170	1	Intergenic	novelGene_1245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAAAAAAAAAATCTGAA	NA	False	NA	NA	False	NA	NA	NA	91692177	91692007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_91692000_91692200
PB_novel_41059_0	chr8	+	176	1	Antisense	novelGene_ENSMUSG00000031667.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	91858806	91858982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_91858800_91859000
PB_novel_41069_0	chr8	+	186	1	Intergenic	novelGene_1246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGAAGAC	5047	False	NA	NA	False	NA	NA	NA	92198411	92198597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_92198400_92198600
PB_novel_41082_0	chr8	+	176	1	Intergenic	novelGene_1247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGACAGTATG	NA	False	NA	NA	False	NA	NA	NA	93516713	93516889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_93516700_93516900
PB_novel_41091_0	chr8	+	4073	1	NIC	ENSMUSG00000033009.16	novel	5310	13	NA	NA	0	1883	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94763890	94767963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_94763900_94768000
PB_novel_41093_0	chr8	+	164	1	Intergenic	novelGene_1248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	94804238	94804402	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_94804200_94804400
PB_novel_41095_0	chr8	-	178	1	Intergenic	novelGene_1249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTAAAAAGTTTCCTTAAA	9748	False	NA	NA	False	NA	NA	NA	94861389	94861211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_94861200_94861400
PB_novel_41100_0	chr8	-	178	1	Intergenic	novelGene_1250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATCACTT	9228	False	NA	NA	False	NA	NA	NA	94908820	94908642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_94908600_94908800
PB_novel_41102_0	chr8	-	177	1	Intergenic	novelGene_1251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAAAAAGAA	6225	False	NA	NA	False	NA	NA	NA	94911823	94911646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_94911600_94911800
PB_novel_41104_0	chr8	-	163	1	Intergenic	novelGene_1252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTAAAGTAAACAAACAA	5778	False	NA	NA	False	NA	NA	NA	94912270	94912107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_94912100_94912300
PB_novel_41105_0	chr8	+	176	1	Intergenic	novelGene_1253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	469	False	NA	NA	False	NA	NA	NA	94924166	94924342	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_94924200_94924300
PB_novel_41114_0	chr8	+	176	1	Intergenic	novelGene_1254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAAAATAAA	4190	False	NA	NA	False	NA	NA	NA	95324643	95324819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_95324600_95324800
PB_novel_41119_2	chr8	-	170	1	Intergenic	novelGene_1255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACCAAAAAAAAAAAAAAA	9923	False	NA	NA	False	NA	NA	NA	95566414	95566244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_95566200_95566400
PB_novel_41123_0	chr8	-	175	1	Intergenic	novelGene_1256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	95578334	95578159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_95578200_95578300
PB_novel_41136_0	chr8	-	176	1	Intergenic	novelGene_1257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	95938272	95938096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_95938100_95938300
PB_novel_41138_0	chr8	+	161	1	Intergenic	novelGene_1258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATTATCTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96170449	96170610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_96170400_96170600
PB_novel_41143_0	chr8	+	164	1	Intergenic	novelGene_1259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAACTTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	96259804	96259968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_96259800_96260000
PB_novel_41145_0	chr8	+	213	1	Intergenic	novelGene_1260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAACACATCTTTAAAAGC	NA	False	NA	NA	False	NA	NA	NA	96325208	96325421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_96325200_96325400
PB_novel_41148_1	chr8	+	3544	1	NIC	ENSMUSG00000031669.11	novel	2519	3	NA	NA	-38	-1174	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96360143	96363687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_96360100_96363700
PB_novel_41150_0	chr8	+	176	1	Intergenic	novelGene_1261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96409125	96409301	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_96409100_96409300
PB_novel_41152_0	chr8	+	2687	1	Antisense	novelGene_ENSMUSG00000036550.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAATAATAATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96450870	96453557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_96450900_96453600
PB_novel_41159_0	chr8	+	173	1	Intergenic	novelGene_1262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96518110	96518283	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_96518100_96518300
PB_novel_41161_0	chr8	+	182	1	Intergenic	novelGene_1263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGTTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96520679	96520861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_96520700_96520900
PB_novel_41163_0	chr8	-	177	1	Intergenic	novelGene_1264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAACTACAAAAA	NA	False	NA	NA	False	NA	NA	NA	96523148	96522971	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_96523000_96523100
PB_novel_41166_0	chr8	-	329	1	Intergenic	novelGene_1265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96539952	96539623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_96539600_96540000
PB_novel_41170_0	chr8	-	171	1	Intergenic	novelGene_1266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAGAGAAAAAAGAAAGA	NA	False	NA	1	True	NA	NA	NA	96580976	96580805	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_96580800_96581000
PB_novel_41177_0	chr8	-	177	1	Intergenic	novelGene_1267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	281	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	96643757	96643580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_96643600_96643800
PB_novel_41179_0	chr8	+	177	1	Intergenic	novelGene_1268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATCCCCATTCAA	NA	False	NA	NA	False	NA	NA	NA	96687011	96687188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_96687000_96687200
PB_novel_41180_0	chr8	-	173	1	Intergenic	novelGene_1269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	96741239	96741066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_96741100_96741200
PB_novel_41186_0	chr8	-	174	1	Intergenic	novelGene_1270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTAAAAATAATAATAATAAT	NA	False	NA	NA	False	NA	NA	NA	101155444	101155270	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_101155300_101155400
PB_novel_41189_0	chr8	+	168	1	Intergenic	novelGene_1271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAATCTAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	102314078	102314246	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_102314100_102314200
PB_novel_41195_0	chr8	-	176	1	Intergenic	novelGene_1272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	105001894	105001718	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_105001700_105001900
PB_novel_41196_0	chr8	+	172	2	Antisense	novelGene_ENSMUSG00000110600.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATCTAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	105025913	105103188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_105026060_105103162
PB_novel_41196_3	chr8	+	177	1	Intergenic	novelGene_1273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	105025913	105026090	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_105025900_105026100
PB_novel_41199_0	chr8	+	182	1	Intergenic	novelGene_1274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105098861	105099043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_105098900_105099000
PB_novel_41200_0	chr8	+	154	1	Intergenic	novelGene_1275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAATAAATAAATCTAA	NA	False	NA	NA	False	NA	NA	NA	105103020	105103174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_105103000_105103200
PB_novel_41204_0	chr8	+	260	1	Intergenic	novelGene_1277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105160217	105160477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_105160200_105160500
PB_novel_41207_0	chr8	-	176	1	Intergenic	novelGene_1278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	105210502	105210326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_105210300_105210500
PB_novel_41209_0	chr8	-	2980	1	NIC	ENSMUSG00000031878.19	novel	1735	19	NA	NA	6	-3621	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	3340	False	NA	NA	False	NA	NA	NA	105261262	105258282	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_105258300_105261300
PB_novel_41214_0	chr8	-	1964	1	Antisense	novelGene_ENSMUSG00000048371.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	273	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGACAAAAAAAAAAAAAAA	2333	False	NA	NA	False	NA	NA	NA	105323958	105321994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_105322000_105324000
PB_novel_41221_0	chr8	+	172	1	Intergenic	novelGene_1279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	266	False	NA	NA	False	NA	NA	NA	105860914	105861086	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_105860900_105861100
PB_novel_41228_0	chr8	-	165	1	Intergenic	novelGene_1280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACAC	8545	False	NA	NA	False	NA	NA	NA	105925387	105925222	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_105925200_105925400
PB_novel_41236_0	chr8	-	172	1	Intergenic	novelGene_1281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATGTTTAAAAAAAA	4588	False	NA	NA	False	NA	NA	NA	105961543	105961371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_105961400_105961500
PB_novel_41237_0	chr8	-	180	1	Intergenic	novelGene_1282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAACT	NA	False	NA	NA	False	NA	NA	NA	105967388	105967208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_105967200_105967400
PB_novel_41239_0	chr8	-	168	1	Intergenic	novelGene_1283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	106028537	106028369	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_106028400_106028500
PB_novel_41249_0	chr8	+	162	1	Intergenic	novelGene_1284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATCTTAAAAAAAAGTC	1158	False	NA	NA	False	NA	NA	NA	106283411	106283573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_106283400_106283600
PB_novel_41252_0	chr8	+	170	1	Intergenic	novelGene_1285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTAAAAAAAAAAAAAAGG	9157	False	NA	NA	False	NA	NA	NA	106291410	106291580	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_106291400_106291600
PB_novel_41254_0	chr8	+	154	1	Intergenic	novelGene_1286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAATAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	106299629	106299783	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_106299600_106299800
PB_novel_41263_3	chr8	-	6122	1	FSM	ENSMUSG00000080021.6	ENSMUST00000116136.3	454	1	-5528	-140	-5528	140	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	106392947	106386825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_106386800_106392900
PB_novel_41264_0	chr8	+	178	1	Intergenic	novelGene_1287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATTTAGAGA	1764	False	NA	NA	False	NA	NA	NA	106401816	106401994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_106401800_106402000
PB_novel_41267_2	chr8	+	1816	1	Genic_Genomic	ENSMUSG00000005699.17	novel	NA	NA	NA	NA	1446	1414	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAACAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106429726	106431542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_106429700_106431500
PB_novel_41273_0	chr8	+	169	1	Intergenic	novelGene_1288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106523628	106523797	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_106523600_106523800
PB_novel_41275_0	chr8	-	136	1	Intergenic	novelGene_1289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106526709	106526573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_106526600_106526700
PB_novel_41281_0	chr8	-	177	1	Intergenic	novelGene_1290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAAAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	106533084	106532907	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_106532900_106533100
PB_novel_41282_0	chr8	+	175	1	Intergenic	novelGene_1291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAATGAGTAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	106533797	106533972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_106533800_106534000
PB_novel_41283_0	chr8	-	176	1	Intergenic	novelGene_1292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTAGC	NA	False	NA	NA	False	NA	NA	NA	106561574	106561398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_106561400_106561600
PB_novel_41284_1	chr8	-	177	1	Intergenic	novelGene_1295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAGAAAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	106637528	106637351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_106637400_106637500
PB_novel_41286_0	chr8	+	2410	1	NIC	ENSMUSG00000008450.9	novel	948	5	NA	NA	0	-12495	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106587296	106589706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_106587300_106589700
PB_novel_41287_0	chr8	-	178	1	Antisense	novelGene_ENSMUSG00000008450.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAACCTCTG	NA	False	NA	NA	False	NA	NA	NA	106597056	106596878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_106596900_106597100
PB_novel_41288_0	chr8	+	168	1	Intergenic	novelGene_1293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	106597605	106597773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_106597600_106597800
PB_novel_41291_0	chr8	-	180	1	Intergenic	novelGene_1294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGAATGTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	106629566	106629386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_106629400_106629600
PB_novel_41293_0	chr8	-	176	1	Intergenic	novelGene_1296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	106641041	106640865	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_106640900_106641000
PB_novel_41295_0	chr8	+	203	1	Intergenic	novelGene_1297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATTTAAAAAAAAAGAAATT	8753	False	NA	NA	False	TATAAA	-2	NA	106645045	106645248	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_106645000_106645200
PB_novel_41297_0	chr8	+	181	1	Intergenic	novelGene_1298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	106681278	106681459	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_106681300_106681500
PB_novel_41299_0	chr8	-	174	1	Intergenic	novelGene_1299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106697772	106697598	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_106697600_106697800
PB_novel_41305_0	chr8	+	175	1	Intergenic	novelGene_1300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	106739093	106739268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_106739100_106739300
PB_novel_41313_1	chr8	-	3135	3	Antisense	novelGene_ENSMUSG00000031904.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAACAAAAAAAAAAAAA	7327	False	NA	NA	False	NA	NA	NA	106921123	106916946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_106919906_106920123_106920227_106921050
PB_novel_41313_2	chr8	-	2468	4	Antisense	novelGene_ENSMUSG00000031904.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAACAAAAAAAAAAAAA	7327	False	NA	NA	False	NA	NA	NA	106921123	106916946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_106919114_106919780_106919906_106920123_106920227_106921050
PB_novel_41313_7	chr8	-	2090	1	Antisense	novelGene_ENSMUSG00000031904.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAACAAAAAAAAAAAAA	9414	False	NA	NA	False	NA	NA	NA	106919036	106916946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_106916900_106919000
PB_novel_41314_0	chr8	-	184	1	Antisense	novelGene_ENSMUSG00000031902.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATCAAAACATTGGT	NA	False	NA	NA	False	NA	NA	NA	106825577	106825393	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_106825400_106825600
PB_novel_41319_0	chr8	-	2075	1	Intergenic	novelGene_1301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106851822	106849747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_106849700_106851800
PB_novel_41323_0	chr8	-	177	1	Intergenic	novelGene_1302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106898223	106898046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_106898000_106898200
PB_novel_41332_0	chr8	-	941	1	Intergenic	novelGene_1303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106972869	106971928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_106971900_106972900
PB_novel_41341_0	chr8	-	180	1	Intergenic	novelGene_1304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTTAAAAAAAAAAAAA	3136	False	NA	NA	False	NA	NA	NA	107290066	107289886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_107289900_107290100
PB_novel_41344_0	chr8	-	176	1	Intergenic	novelGene_1305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGCCCA	NA	False	NA	NA	False	NA	NA	NA	107300295	107300119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_107300100_107300300
PB_novel_41361_0	chr8	-	362	1	Intergenic	novelGene_1306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCCATTTAGAAAATTA	NA	False	NA	NA	False	NA	NA	NA	107529498	107529136	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_107529100_107529500
PB_novel_41364_0	chr8	+	2833	1	Genic_Genomic	ENSMUSG00000041949.7	novel	NA	NA	NA	NA	166560	1099	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107576337	107579170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_+_107576300_107579200
PB_novel_41367_1	chr8	-	2697	2	Antisense	novelGene_ENSMUSG00000041438.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	6	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACCTCTAAGAAATGAAAAA	NA	False	NA	NA	False	NA	NA	NA	107641015	107638107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_107640647_107640857
PB_novel_41368_0	chr8	+	181	1	Intergenic	novelGene_1307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAAAAGGTGG	NA	False	NA	NA	False	NA	NA	NA	107650523	107650704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_107650500_107650700
PB_novel_41370_1	chr8	+	173	1	Intergenic	novelGene_1308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	107661476	107661649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_107661500_107661600
PB_novel_41371_1	chr8	-	161	1	Intergenic	novelGene_1309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATTTTAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	107687070	107686909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_107686900_107687100
PB_novel_41374_0	chr8	+	179	1	Intergenic	novelGene_1310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAATAAATAAATAGAT	NA	False	NA	NA	False	NA	NA	NA	107748094	107748273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_107748100_107748300
PB_novel_41375_0	chr8	-	172	1	Intergenic	novelGene_1311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	107754245	107754073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_107754100_107754200
PB_novel_41380_0	chr8	-	172	1	Intergenic	novelGene_1312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAGAAATTA	NA	False	NA	NA	False	NA	NA	NA	107815772	107815600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_107815600_107815800
PB_novel_41387_0	chr8	-	177	1	Intergenic	novelGene_1313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGGCC	NA	False	NA	NA	False	NA	NA	NA	107881177	107881000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_107881000_107881200
PB_novel_41389_0	chr8	-	165	1	Intergenic	novelGene_1314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	589	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAATAGA	NA	False	NA	NA	False	NA	NA	NA	107898077	107897912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_107897900_107898100
PB_novel_41399_0	chr8	+	199	1	Intergenic	novelGene_1315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGGAGGAAGGG	NA	False	NA	NA	False	NA	NA	NA	108126717	108126916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_108126700_108126900
PB_novel_41400_0	chr8	+	176	1	Intergenic	novelGene_1316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAGAAAGAGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	108161366	108161542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_108161400_108161500
PB_novel_41404_1	chr8	-	161	1	Intergenic	novelGene_1318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAAGTAAATCTTTGAAAA	NA	False	NA	NA	False	NA	NA	NA	108315594	108315433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_108315400_108315600
PB_novel_41406_0	chr8	+	173	1	Intergenic	novelGene_1319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	250	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108317905	108318078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_108317900_108318100
PB_novel_41409_0	chr8	-	170	1	Intergenic	novelGene_1317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	108291294	108291124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_108291100_108291300
PB_novel_41429_0	chr8	-	1106	1	FSM	ENSMUSG00000110528.2	ENSMUST00000211890.2	174	1	-43	-889	-43	889	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	110067539	110066433	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr8_-_110066400_110067500
PB_novel_41433_0	chr8	-	918	2	Antisense	novelGene_ENSMUSG00000031723.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110296404	110292660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_110292694_110295519
PB_novel_41434_0	chr8	-	3740	1	Antisense	novelGene_ENSMUSG00000031723.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAGGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110296404	110292664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_110292700_110296400
PB_novel_41437_0	chr8	+	168	1	Antisense	novelGene_ENSMUSG00000031730.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTAAAAAAAAAGACACA	NA	False	NA	NA	False	NA	NA	NA	110319675	110319843	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_110319700_110319800
PB_novel_41446_0	chr8	-	2597	1	NIC	ENSMUSG00000069895.5	novel	7526	4	NA	NA	-7	-1617	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-30	NA	110464361	110461764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_110461800_110464400
PB_novel_41451_0	chr8	-	5144	1	Intergenic	novelGene_1320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	3388	False	NA	NA	False	NA	NA	NA	110518791	110513647	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_110513600_110518800
PB_novel_41453_0	chr8	+	176	1	Intergenic	novelGene_1321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	5905	False	NA	NA	False	NA	NA	NA	110528290	110528466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_110528300_110528500
PB_novel_41454_0	chr8	-	1753	1	Antisense	novelGene_ENSMUSG00000031731.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	110557171	110555418	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_110555400_110557200
PB_novel_41458_2	chr8	-	176	1	Intergenic	novelGene_1322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	591	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111211432	111211256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_111211300_111211400
PB_novel_41467_0	chr8	+	175	1	Intergenic	novelGene_1323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	111328502	111328677	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111328500_111328700
PB_novel_41470_0	chr8	+	182	1	Intergenic	novelGene_1324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	111489875	111490057	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111489900_111490100
PB_novel_41471_0	chr8	+	173	1	Intergenic	novelGene_1325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	111507497	111507670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111507500_111507700
PB_novel_41472_0	chr8	-	166	1	Intergenic	novelGene_1326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGCTTCA	8599	False	NA	NA	False	NA	NA	NA	111528966	111528800	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_111528800_111529000
PB_novel_41473_0	chr8	+	170	1	Intergenic	novelGene_1327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAAATATATTGT	1526	False	NA	NA	False	NA	NA	NA	111541754	111541924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111541800_111541900
PB_novel_41475_0	chr8	+	423	1	Antisense	novelGene_ENSMUSG00000033732.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7201	False	NA	NA	False	NA	NA	NA	111571238	111571661	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_111571200_111571700
PB_novel_41476_0	chr8	-	171	1	Intergenic	novelGene_1328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATCAAAGCAC	NA	False	NA	NA	False	NA	NA	NA	111578698	111578527	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_111578500_111578700
PB_novel_41477_0	chr8	-	175	1	Intergenic	novelGene_1329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	111581710	111581535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_111581500_111581700
PB_novel_41479_2	chr8	+	190	1	Intergenic	novelGene_1330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAAAAAAAAGCAAAATT	1279	False	NA	NA	False	NA	NA	NA	111583928	111584118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111583900_111584100
PB_novel_41485_0	chr8	+	161	1	Intergenic	novelGene_1331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAGAATAA	9461	False	NA	NA	False	NA	NA	NA	111639311	111639472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111639300_111639500
PB_novel_41487_0	chr8	-	174	1	Intergenic	novelGene_1332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	111657228	111657054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_111657100_111657200
PB_novel_41493_0	chr8	-	176	1	Intergenic	novelGene_1333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAACT	9430	False	NA	NA	False	NA	NA	NA	111680157	111679981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_111680000_111680200
PB_novel_41497_0	chr8	+	177	1	Intergenic	novelGene_1334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	111721499	111721676	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111721500_111721700
PB_novel_41501_0	chr8	+	233	1	Intergenic	novelGene_1335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTTTTCAAAGTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111753459	111753692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111753500_111753700
PB_novel_41507_0	chr8	-	159	1	Intergenic	novelGene_1336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATCTAAG	NA	False	NA	NA	False	NA	NA	NA	111810750	111810591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_111810600_111810800
PB_novel_41511_0	chr8	-	136	1	Intergenic	novelGene_1337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111837777	111837641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_111837600_111837800
PB_novel_41512_0	chr8	-	174	1	Intergenic	novelGene_1338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGACC	3710	False	NA	NA	False	NA	NA	NA	111860328	111860154	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_111860200_111860300
PB_novel_41517_5	chr8	+	171	1	Intergenic	novelGene_1345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	3733	False	NA	NA	False	NA	NA	NA	112022588	112022759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_112022600_112022800
PB_novel_41522_2	chr8	+	177	1	Intergenic	novelGene_1343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111990380	111990557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111990400_111990600
PB_novel_41524_0	chr8	+	175	1	Intergenic	novelGene_1342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	111982240	111982415	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111982200_111982400
PB_novel_41527_1	chr8	+	167	1	Intergenic	novelGene_1339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111960211	111960378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111960200_111960400
PB_novel_41529_0	chr8	-	162	1	Intergenic	novelGene_1340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCTTAAAAAACAACAACAA	NA	False	NA	NA	False	NA	NA	NA	111966346	111966184	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_111966200_111966300
PB_novel_41530_0	chr8	+	175	1	Intergenic	novelGene_1341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAACTTG	NA	False	NA	NA	False	NA	NA	NA	111967599	111967774	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111967600_111967800
PB_novel_41535_2	chr8	+	184	1	Intergenic	novelGene_1344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACGTGGAA	NA	False	NA	NA	False	NA	NA	NA	111993040	111993224	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_111993000_111993200
PB_novel_41545_0	chr8	-	177	1	Intergenic	novelGene_1346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAGATATGTTAT	NA	False	NA	NA	False	NA	NA	NA	112035663	112035486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_112035500_112035700
PB_novel_41551_0	chr8	+	2236	2	Antisense	novelGene_ENSMUSG00000031959.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112201267	112206613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_112202832_112205941
PB_novel_41552_0	chr8	+	176	1	Intergenic	novelGene_1347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112203075	112203251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_112203100_112203300
PB_novel_41553_0	chr8	+	4926	2	Antisense	novelGene_ENSMUSG00000031959.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112201267	112206613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_112203066_112203485
PB_novel_41554_0	chr8	+	174	2	Antisense	novelGene_ENSMUSG00000031959.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAGAAGAAGAA	NA	False	NA	NA	False	AATAAA	-9	NA	112203284	112212673	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_112203436_112212650
PB_novel_41554_5	chr8	+	175	1	Intergenic	novelGene_1348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112203285	112203460	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_112203300_112203500
PB_novel_41555_1	chr8	+	176	1	Intergenic	novelGene_1349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	112257204	112257380	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_112257200_112257400
PB_novel_41558_0	chr8	+	151	1	Intergenic	novelGene_1350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112259470	112259621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_112259500_112259600
PB_novel_41561_0	chr8	-	175	1	Intergenic	novelGene_1351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAATGTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112281743	112281568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_112281600_112281700
PB_novel_41562_0	chr8	+	176	1	Intergenic	novelGene_1352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAACAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	112282385	112282561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_112282400_112282600
PB_novel_41563_0	chr8	+	168	1	Intergenic	novelGene_1353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	112312644	112312812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_112312600_112312800
PB_novel_41566_0	chr8	-	164	1	Intergenic	novelGene_1354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAGGAATCTGTA	NA	False	NA	NA	False	NA	NA	NA	112372152	112371988	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_112372000_112372200
PB_novel_41567_0	chr8	-	172	1	Intergenic	novelGene_1355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	112395594	112395422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_112395400_112395600
PB_novel_41572_0	chr8	+	251	1	Intergenic	novelGene_1356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112479308	112479559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_112479300_112479600
PB_novel_41574_0	chr8	+	175	1	Intergenic	novelGene_1357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAACAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	112489799	112489974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_112489800_112490000
PB_novel_41575_0	chr8	-	349	1	Intergenic	novelGene_1358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	112491670	112491321	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_112491300_112491700
PB_novel_41579_0	chr8	-	173	1	Intergenic	novelGene_1359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATGTGTACAAA	NA	False	NA	NA	False	NA	NA	NA	112519064	112518891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_112518900_112519100
PB_novel_41582_0	chr8	-	176	1	Intergenic	novelGene_1360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112537043	112536867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_112536900_112537000
PB_novel_41589_1	chr8	+	169	1	Intergenic	novelGene_1361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112626450	112626619	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_112626400_112626600
PB_novel_41595_0	chr8	-	4087	1	Genic_Genomic	ENSMUSG00000031949.18	novel	NA	NA	NA	NA	21446	2028	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112695598	112691511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_112691500_112695600
PB_novel_41596_0	chr8	-	177	1	Intergenic	novelGene_1362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAATAATAATAATT	NA	False	NA	NA	False	NA	NA	NA	112697149	112696972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_112697000_112697100
PB_novel_41599_0	chr8	-	176	1	Intergenic	novelGene_1363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGTACAGT	NA	False	NA	NA	False	NA	NA	NA	112713495	112713319	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_112713300_112713500
PB_novel_41601_3	chr8	+	288	3	Antisense	novelGene_ENSMUSG00000031948.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACCCAGAAAAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	112730016	112737916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_112730073_112732263_112732421_112737841
PB_novel_41602_0	chr8	+	1577	1	Antisense	novelGene_ENSMUSG00000031948.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	112729457	112731034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_112729500_112731000
PB_novel_41603_0	chr8	+	1753	1	Antisense	novelGene_ENSMUSG00000031948.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	112729457	112731210	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_+_112729500_112731200
PB_novel_41608_0	chr8	+	179	1	Intergenic	novelGene_1364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAGAAGGAGCAGGAGG	NA	False	NA	NA	False	NA	NA	NA	112767296	112767475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_112767300_112767500
PB_novel_41617_0	chr8	-	82	1	Intergenic	novelGene_1365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAATAAACA	NA	False	NA	NA	False	NA	NA	NA	113310571	113310489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_113310500_113310600
PB_novel_41623_0	chr8	-	177	1	Intergenic	novelGene_1366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	114839469	114839292	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_114839300_114839500
PB_novel_41624_0	chr8	-	205	1	Intergenic	novelGene_1367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115064839	115064634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_115064600_115064800
PB_novel_41645_0	chr8	+	200	1	Intergenic	novelGene_1368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAGAAA	8646	False	NA	NA	False	NA	NA	NA	117469852	117470052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_117469900_117470100
PB_novel_41647_0	chr8	+	172	1	Intergenic	novelGene_1369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATAAAAGTAAG	NA	False	NA	NA	False	NA	NA	NA	117594959	117595131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_117595000_117595100
PB_novel_41648_0	chr8	+	233	1	Intergenic	novelGene_1370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117608840	117609073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_117608800_117609100
PB_novel_41659_0	chr8	-	173	1	Intergenic	novelGene_1371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAACCAAACAAATCA	NA	False	NA	NA	False	NA	NA	NA	117865903	117865730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_117865700_117865900
PB_novel_41671_0	chr8	-	160	1	Intergenic	novelGene_1372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	118037742	118037582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_118037600_118037700
PB_novel_41676_0	chr8	+	176	1	Intergenic	novelGene_1373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACACCACC	NA	False	NA	NA	False	NA	NA	NA	118191603	118191779	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_118191600_118191800
PB_novel_41679_0	chr8	+	176	1	Intergenic	novelGene_1374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGAATTTGT	NA	False	NA	NA	False	NA	NA	NA	118200549	118200725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_118200500_118200700
PB_novel_41694_0	chr8	+	177	1	Intergenic	novelGene_1375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	119906938	119907115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_119906900_119907100
PB_novel_41696_0	chr8	-	176	1	Intergenic	novelGene_1376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAGAAAGAAAAAG	8157	False	NA	NA	False	NA	NA	NA	120107994	120107818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_120107800_120108000
PB_novel_41709_0	chr8	+	175	1	Intergenic	novelGene_1377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	120416981	120417156	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_120417000_120417200
PB_novel_41711_0	chr8	+	176	1	Intergenic	novelGene_1378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	120464065	120464241	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_120464100_120464200
PB_novel_41716_0	chr8	-	206	1	Intergenic	novelGene_1379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	120599693	120599487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_120599500_120599700
PB_novel_41720_0	chr8	-	1550	2	Antisense	novelGene_ENSMUSG00000031826.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAGAAAGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	120646319	120644569	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_120645186_120645385
PB_novel_41721_0	chr8	-	172	1	Intergenic	novelGene_1380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAAATAAATCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	120646682	120646510	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_120646500_120646700
PB_novel_41722_0	chr8	-	3018	1	Intergenic	novelGene_1381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAACAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120652782	120649764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_120649800_120652800
PB_novel_41723_0	chr8	-	1122	1	Antisense	novelGene_ENSMUSG00000031826.21_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	2583	False	NA	NA	False	NA	NA	NA	120665545	120664423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_120664400_120665500
PB_novel_41726_0	chr8	-	155	1	Intergenic	novelGene_1382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATATTTAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	120835106	120834951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_120835000_120835100
PB_novel_41733_1	chr8	-	934	4	Antisense	novelGene_ENSMUSG00000098280.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGCAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121293215	121215484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr8_-_121215888_121280319_121280540_121289362_121289562_121293103
PB_novel_41734_0	chr8	-	181	1	Intergenic	novelGene_1383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCTTAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	121230735	121230554	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_121230600_121230700
PB_novel_41735_0	chr8	+	174	1	Intergenic	novelGene_1384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	121256956	121257130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_121257000_121257100
PB_novel_41739_0	chr8	-	177	1	Intergenic	novelGene_1385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	121317921	121317744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_121317700_121317900
PB_novel_41747_0	chr8	-	6115	1	NIC	ENSMUSG00000097919.2	novel	758	4	NA	NA	154	-53025	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	121394664	121388549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_-_121388500_121394700
PB_novel_41750_0	chr8	-	148	1	Intergenic	novelGene_1386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAATAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121403555	121403407	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_121403400_121403600
PB_novel_41752_0	chr8	-	146	1	Intergenic	novelGene_1387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATAAAATAAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	121408997	121408851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_121408900_121409000
PB_novel_41754_0	chr8	+	175	1	Intergenic	novelGene_1388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	559	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAACAAAT	NA	False	NA	NA	False	NA	NA	NA	121451099	121451274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_121451100_121451300
PB_novel_41758_0	chr8	+	175	1	Intergenic	novelGene_1389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121872454	121872629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_121872500_121872600
PB_novel_41761_0	chr8	+	2709	1	Intergenic	novelGene_1390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	122099194	122101903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_122099200_122101900
PB_novel_41765_0	chr8	-	201	1	Intergenic	novelGene_1391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	986	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTTTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122261290	122261089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_122261100_122261300
PB_novel_41766_0	chr8	+	4435	2	Fusion	ENSMUSG00000097424.3_ENSMUSG00000098211.3	novel	964	3	NA	NA	8	-1093	intron_retention	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	GGGGCT	-17	NA	122268826	122273298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr8_+_122273023_122273059
PB_novel_41768_0	chr8	-	245	1	Intergenic	novelGene_1392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAATAAAATAAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	122284334	122284089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_122284100_122284300
PB_novel_41771_0	chr8	+	373	1	Intergenic	novelGene_1393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122330037	122330410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_122330000_122330400
PB_novel_41774_0	chr8	-	178	1	Intergenic	novelGene_1394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	122393212	122393034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_122393000_122393200
PB_novel_41775_0	chr8	-	176	1	Intergenic	novelGene_1395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAGAAAGAAAG	6964	False	NA	NA	False	NA	NA	NA	122425971	122425795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_122425800_122426000
PB_novel_41784_0	chr8	+	168	1	Intergenic	novelGene_1396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTAATAACATCAACAACA	NA	False	NA	NA	False	NA	NA	NA	122651164	122651332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_122651200_122651300
PB_novel_41786_0	chr8	-	172	1	Intergenic	novelGene_1397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	122658827	122658655	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_122658700_122658800
PB_novel_41792_0	chr8	+	174	1	Intergenic	novelGene_1398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGTATTCTTTAAAAAA	1650	False	NA	NA	False	NA	NA	NA	122695870	122696044	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_122695900_122696000
PB_novel_41794_0	chr8	+	3412	1	NIC	ENSMUSG00000025316.17	novel	2289	13	NA	NA	21667	-12	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAATGGAAAAAA	NA	False	NA	NA	False	TTTAAA	-33	NA	122749252	122752664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_122749300_122752700
PB_novel_41799_0	chr8	-	187	1	Intergenic	novelGene_1399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAGTCTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123119817	123119630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_123119600_123119800
PB_novel_41805_0	chr8	+	173	1	Intergenic	novelGene_1400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATACATACATACATCTAAA	5707	False	NA	NA	False	NA	NA	NA	123218730	123218903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_123218700_123218900
PB_novel_41806_0	chr8	-	175	1	Intergenic	novelGene_1401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAATTAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	123225888	123225713	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_123225700_123225900
PB_novel_41809_0	chr8	+	169	1	Intergenic	novelGene_1402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	7589	False	NA	NA	False	NA	NA	NA	123261913	123262082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_123261900_123262100
PB_novel_41811_0	chr8	-	178	1	Intergenic	novelGene_1403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGAAAGAAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	123285503	123285325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_123285300_123285500
PB_novel_41812_0	chr8	-	198	1	Intergenic	novelGene_1404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAATAAATAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	123286623	123286425	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_123286400_123286600
PB_novel_41814_0	chr8	+	193	1	Intergenic	novelGene_1405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCTTTTTAAAAAGTAAAG	9378	False	NA	NA	False	NA	NA	NA	123290354	123290547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_123290400_123290500
PB_novel_41818_0	chr8	-	174	1	Intergenic	novelGene_1406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	123343899	123343725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_123343700_123343900
PB_novel_41820_0	chr8	+	158	1	Intergenic	novelGene_1407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	123570660	123570818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_123570700_123570800
PB_novel_41827_0	chr8	-	4143	1	Genic_Genomic	ENSMUSG00000035569.18	novel	NA	NA	NA	NA	-3872	2608	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123634336	123630193	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr8_-_123630200_123634300
PB_novel_41829_0	chr8	+	3001	1	Intergenic	novelGene_1408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1775	False	NA	NA	False	NA	NA	NA	123756121	123759122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_123756100_123759100
PB_novel_41832_0	chr8	+	170	1	Intergenic	novelGene_1409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGGAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	123828074	123828244	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_123828100_123828200
PB_novel_41835_0	chr8	+	176	1	Intergenic	novelGene_1410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGTGTGT	9062	False	NA	NA	False	NA	NA	NA	123862854	123863030	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_123862900_123863000
PB_novel_41842_0	chr8	+	183	1	Intergenic	novelGene_1411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	123967741	123967924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_123967700_123967900
PB_novel_41849_0	chr8	+	173	1	Intergenic	novelGene_1412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124035589	124035762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_124035600_124035800
PB_novel_41855_0	chr8	+	177	1	Intergenic	novelGene_1413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	545	False	NA	NA	False	NA	NA	NA	124048156	124048333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_124048200_124048300
PB_novel_41862_0	chr8	-	176	1	Intergenic	novelGene_1414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGTCAACCCTAAA	NA	False	NA	NA	False	NA	NA	NA	124093097	124092921	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_124092900_124093100
PB_novel_41864_0	chr8	-	158	1	Intergenic	novelGene_1415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAATTTAAAAT	7571	False	NA	NA	False	NA	NA	NA	124142227	124142069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_124142100_124142200
PB_novel_41871_0	chr8	-	182	1	Intergenic	novelGene_1416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAACAATGAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	124193454	124193272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_124193300_124193500
PB_novel_41878_0	chr8	+	173	1	Intergenic	novelGene_1417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	124371729	124371902	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_124371700_124371900
PB_novel_41883_0	chr8	-	170	1	Intergenic	novelGene_1418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAACAAAACAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	124522793	124522623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_124522600_124522800
PB_novel_41886_0	chr8	-	162	1	Intergenic	novelGene_1419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAATAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124542080	124541918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_124541900_124542100
PB_novel_41897_0	chr8	-	170	1	Intergenic	novelGene_1420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTTAAAAAGAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	124598389	124598219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_124598200_124598400
PB_novel_41906_0	chr8	+	177	1	Intergenic	novelGene_1421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124700685	124700862	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_124700700_124700900
PB_novel_41909_0	chr8	+	170	1	Intergenic	novelGene_1422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTGGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124712051	124712221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_124712100_124712200
PB_novel_41910_0	chr8	-	168	1	Intergenic	novelGene_1423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTAAAAAATCTTTAAAA	3851	False	NA	NA	False	NA	NA	NA	124718126	124717958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_124718000_124718100
PB_novel_41911_1	chr8	-	175	1	Intergenic	novelGene_1424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	124739620	124739445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_124739400_124739600
PB_novel_41914_0	chr8	-	4691	1	Intergenic	novelGene_1425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAACAACAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	124780147	124775456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_124775500_124780100
PB_novel_41918_0	chr8	+	132	1	Intergenic	novelGene_1426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAATTAAGTAAATAAATG	NA	False	NA	NA	False	NA	NA	NA	124808436	124808568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_124808400_124808600
PB_novel_41925_0	chr8	-	171	1	Intergenic	novelGene_1427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAGAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	125186020	125185849	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_125185800_125186000
PB_novel_41929_0	chr8	+	169	1	Intergenic	novelGene_1428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	125322338	125322507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_125322300_125322500
PB_novel_41932_0	chr8	-	176	1	Intergenic	novelGene_1429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATTCATT	NA	False	NA	NA	False	NA	NA	NA	125347403	125347227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_125347200_125347400
PB_novel_41933_0	chr8	+	171	1	Intergenic	novelGene_1430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGCGT	NA	False	NA	NA	False	NA	NA	NA	125385707	125385878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_125385700_125385900
PB_novel_41936_0	chr8	-	270	1	Intergenic	novelGene_1431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAATAAAATATTAA	NA	False	NA	NA	False	NA	NA	NA	125452854	125452584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_125452600_125452900
PB_novel_41942_0	chr8	-	174	1	Intergenic	novelGene_1432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125607661	125607487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_125607500_125607700
PB_novel_41944_0	chr8	+	172	1	Intergenic	novelGene_1433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAACCAAACCAAACCA	NA	False	NA	NA	False	NA	NA	NA	125646957	125647129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_125647000_125647100
PB_novel_41945_0	chr8	+	174	1	Intergenic	novelGene_1434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATATATTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125661511	125661685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_125661500_125661700
PB_novel_41946_0	chr8	+	4299	1	Intergenic	novelGene_1435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125668178	125672477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_125668200_125672500
PB_novel_41978_0	chr8	+	194	1	Intergenic	novelGene_1436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTGTCAGAAAAAAAAAAAAA	7346	False	NA	NA	False	NA	NA	NA	127276328	127276522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_127276300_127276500
PB_novel_41982_0	chr8	+	159	1	Intergenic	novelGene_1437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAACAAAAAAAATTT	NA	False	NA	-16	True	NA	NA	NA	127303150	127303309	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_127303200_127303300
PB_novel_41984_0	chr8	+	177	1	Intergenic	novelGene_1438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGTACAC	NA	False	NA	NA	False	NA	NA	NA	127538797	127538974	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_127538800_127539000
PB_novel_41986_0	chr8	-	214	1	Intergenic	novelGene_1439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGTGTAACCTG	NA	False	NA	NA	False	NA	NA	NA	127716255	127716041	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_127716000_127716300
PB_novel_41987_0	chr8	-	175	1	Intergenic	novelGene_1440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCAGCAGG	NA	False	NA	NA	False	NA	NA	NA	127723694	127723519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_127723500_127723700
PB_novel_41988_0	chr8	-	199	1	Intergenic	novelGene_1441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATCTTTATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127741186	127740987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_127741000_127741200
PB_novel_41989_0	chr8	-	175	1	Intergenic	novelGene_1442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAATAAATAAATATAA	NA	False	NA	NA	False	NA	NA	NA	127755324	127755149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_127755100_127755300
PB_novel_41990_0	chr8	-	131	1	Intergenic	novelGene_1443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGGGAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	127759521	127759390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_127759400_127759500
PB_novel_41993_0	chr8	-	2546	1	Intergenic	novelGene_1444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127908332	127905786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_127905800_127908300
PB_novel_41994_0	chr8	-	173	1	Intergenic	novelGene_1445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTTAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	127935257	127935084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_127935100_127935300
PB_novel_42003_0	chr8	+	1043	1	NIC	ENSMUSG00000025809.16	novel	3815	16	NA	NA	1	-23860	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129412238	129413281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr8_+_129412200_129413300
PB_novel_42007_0	chr8	-	169	1	Intergenic	novelGene_1446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAATTAAAT	NA	False	NA	NA	False	NA	NA	NA	129582384	129582215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_129582200_129582400
PB_novel_42009_0	chr8	+	203	1	Intergenic	novelGene_1447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTGTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129898025	129898228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_+_129898000_129898200
PB_novel_42014_0	chr9	-	174	1	Intergenic	novelGene_7833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	3302347	3302173	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_3302200_3302300
PB_novel_42015_1	chr9	-	158	1	Intergenic	novelGene_7835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAGAGATAATAAAGCT	NA	False	NA	NA	False	NA	NA	NA	3359354	3359196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_3359200_3359400
PB_novel_42017_0	chr9	-	178	1	Intergenic	novelGene_7834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATAGTTCAGTC	NA	False	NA	NA	False	NA	NA	NA	3342315	3342137	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_3342100_3342300
PB_novel_42020_0	chr9	+	2439	1	Intergenic	novelGene_7836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-19	NA	3414327	3416766	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_3414300_3416800
PB_novel_42020_3	chr9	+	3595	2	NNC	ENSMUSG00000025898.7	novel	2085	3	NA	NA	9011	3566	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAGAAAAAAAAA	9020	False	NA	NA	False	AATACA	-18	NA	3413098	3416765	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NNC_chr9_+_3416226_3416297
PB_novel_42035_0	chr9	+	167	1	Intergenic	novelGene_7837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATCTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4815056	4815223	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_4815100_4815200
PB_novel_42041_0	chr9	+	176	1	Intergenic	novelGene_7838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	6057445	6057621	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_6057400_6057600
PB_novel_42042_0	chr9	-	176	1	Intergenic	novelGene_7839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6238005	6237829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_6237800_6238000
PB_novel_42043_0	chr9	-	174	1	Intergenic	novelGene_7840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATTC	NA	False	NA	NA	False	NA	NA	NA	6278473	6278299	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_6278300_6278500
PB_novel_42046_0	chr9	+	175	1	Intergenic	novelGene_7841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	6837505	6837680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_6837500_6837700
PB_novel_42049_0	chr9	+	172	1	Intergenic	novelGene_7842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	6860894	6861066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_6860900_6861100
PB_novel_42055_0	chr9	+	172	1	Intergenic	novelGene_7843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	7623743	7623915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_7623700_7623900
PB_novel_42056_0	chr9	-	172	1	Intergenic	novelGene_7844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	7700131	7699959	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_7700000_7700100
PB_novel_42062_0	chr9	-	174	1	Intergenic	novelGene_7845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAACAACAACAACAA	2856	False	NA	NA	False	NA	NA	NA	7847787	7847613	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_7847600_7847800
PB_novel_42064_0	chr9	-	177	1	Intergenic	novelGene_7846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATATAAAAAAAAAAAA	8605	False	NA	NA	False	NA	NA	NA	7859526	7859349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_7859300_7859500
PB_novel_42068_0	chr9	+	168	1	Intergenic	novelGene_7847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAATAAATCTTTT	NA	False	NA	NA	False	NA	NA	NA	8013166	8013334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_8013200_8013300
PB_novel_42073_0	chr9	+	195	1	Intergenic	novelGene_7848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAAGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8057251	8057446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_8057300_8057400
PB_novel_42078_0	chr9	+	171	1	Intergenic	novelGene_7849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATACCCTCAA	NA	False	NA	NA	False	NA	NA	NA	9128888	9129059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_9128900_9129100
PB_novel_42083_0	chr9	-	176	1	Intergenic	novelGene_7850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACTATTCAGTA	NA	False	NA	NA	False	NA	NA	NA	9513716	9513540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_9513500_9513700
PB_novel_42087_0	chr9	+	173	1	Intergenic	novelGene_7851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	12550496	12550669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_12550500_12550700
PB_novel_42094_0	chr9	-	173	1	Intergenic	novelGene_7852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAACAAAAACGA	NA	False	NA	NA	False	NA	NA	NA	13583711	13583538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_13583500_13583700
PB_novel_42099_0	chr9	-	177	1	Intergenic	novelGene_7853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	341	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13702598	13702421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_13702400_13702600
PB_novel_42101_0	chr9	-	175	1	Intergenic	novelGene_7854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	13866725	13866550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_13866600_13866700
PB_novel_42105_0	chr9	+	173	1	Intergenic	novelGene_7855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAGAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	14310865	14311038	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_14310900_14311000
PB_novel_42113_0	chr9	-	178	1	Intergenic	novelGene_7856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTCA	1643	False	NA	NA	False	NA	NA	NA	14739050	14738872	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_14738900_14739000
PB_novel_42114_0	chr9	-	180	1	Intergenic	novelGene_7857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAAAAAAAAAAAGAGCT	2435	False	NA	NA	False	NA	NA	NA	14749566	14749386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_14749400_14749600
PB_novel_42117_0	chr9	+	142	1	Intergenic	novelGene_7858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	6559	False	NA	NA	False	NA	NA	NA	14791297	14791439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_14791300_14791400
PB_novel_42121_0	chr9	-	176	1	Intergenic	novelGene_7859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATCCCACAGA	NA	False	NA	NA	False	NA	NA	NA	15122763	15122587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_15122600_15122800
PB_novel_42125_0	chr9	-	176	1	Intergenic	novelGene_7860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAACAGTGGAATA	NA	False	NA	NA	False	NA	NA	NA	15213607	15213431	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_15213400_15213600
PB_novel_42127_0	chr9	-	174	1	Intergenic	novelGene_7861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAATTAAGCAG	3834	False	NA	NA	False	NA	NA	NA	15302623	15302449	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_15302400_15302600
PB_novel_42131_0	chr9	+	175	1	Intergenic	novelGene_7862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGACAGGAAACC	NA	False	NA	NA	False	NA	NA	NA	15852795	15852970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_15852800_15853000
PB_novel_42145_0	chr9	+	168	1	Intergenic	novelGene_7863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	18794423	18794591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_18794400_18794600
PB_novel_42146_0	chr9	-	171	1	Intergenic	novelGene_7864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	18983269	18983098	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_18983100_18983300
PB_novel_42147_0	chr9	-	175	1	Intergenic	novelGene_7865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAAAAAAAAAGAATTAC	NA	False	NA	NA	False	NA	NA	NA	19523594	19523419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_19523400_19523600
PB_novel_42157_1	chr9	-	176	1	Intergenic	novelGene_7866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATAAGGAAAACC	NA	False	NA	NA	False	NA	NA	NA	20437566	20437390	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_20437400_20437600
PB_novel_42160_0	chr9	-	177	1	Intergenic	novelGene_7867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAATTGAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	20469563	20469386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_20469400_20469600
PB_novel_42166_0	chr9	+	177	1	Intergenic	novelGene_7868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20772207	20772384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_20772200_20772400
PB_novel_42170_0	chr9	+	181	1	Intergenic	novelGene_7869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAGAAAACACA	9339	False	NA	NA	False	NA	NA	NA	20907239	20907420	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_20907200_20907400
PB_novel_42171_0	chr9	-	184	1	Intergenic	novelGene_7870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	3196	False	NA	NA	False	NA	NA	NA	20922653	20922469	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_20922500_20922700
PB_novel_42174_0	chr9	-	177	1	Intergenic	novelGene_7871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTAAAAATCCAAAACC	6870	False	NA	NA	False	NA	NA	NA	20934922	20934745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_20934700_20934900
PB_novel_42176_0	chr9	-	178	1	Intergenic	novelGene_7872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACTAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	20995583	20995405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_20995400_20995600
PB_novel_42177_0	chr9	-	166	1	Intergenic	novelGene_7873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTTAAAAAGAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	21007124	21006958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21007000_21007100
PB_novel_42184_0	chr9	+	173	1	Intergenic	novelGene_7874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGTGCAC	NA	False	NA	13	True	NA	NA	NA	21071064	21071237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_21071100_21071200
PB_novel_42190_0	chr9	-	176	1	Intergenic	novelGene_7875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	8166	False	NA	NA	False	NA	NA	NA	21134917	21134741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21134700_21134900
PB_novel_42191_0	chr9	-	176	1	Intergenic	novelGene_7876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	8166	False	NA	NA	False	NA	NA	NA	21134917	21134741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21134700_21134900
PB_novel_42197_0	chr9	-	177	1	Intergenic	novelGene_7877	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAATAGTT	NA	False	NA	NA	False	NA	NA	NA	21192230	21192053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21192100_21192200
PB_novel_42198_0	chr9	-	174	1	Intergenic	novelGene_7878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	21204174	21204000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21204000_21204200
PB_novel_42199_0	chr9	-	176	1	Intergenic	novelGene_7883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	292	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21399982	21399806	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21399800_21400000
PB_novel_42203_0	chr9	-	161	1	Intergenic	novelGene_7879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAATAATAA	8404	False	NA	NA	False	NA	NA	NA	21240039	21239878	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21239900_21240000
PB_novel_42204_0	chr9	+	174	1	Intergenic	novelGene_7880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAAAAAAGGA	6932	False	NA	NA	False	NA	NA	NA	21242538	21242712	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_21242500_21242700
PB_novel_42207_2	chr9	-	798	7	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCCA	7313	False	NA	NA	False	NA	NA	NA	21305027	21279314	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_21279394_21298993_21299093_21299403_21299446_21299818_21300049_21300600_21300780_21303590_21303737_21305004
PB_novel_42215_0	chr9	-	173	1	Intergenic	novelGene_7881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATCTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21325091	21324918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21324900_21325100
PB_novel_42217_0	chr9	+	176	1	Intergenic	novelGene_7882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	21362432	21362608	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_21362400_21362600
PB_novel_42219_0	chr9	-	4456	1	Antisense	novelGene_ENSMUSG00000033335.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21385685	21381229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_21381200_21385700
PB_novel_42221_0	chr9	+	173	1	Intergenic	novelGene_7884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	21423067	21423240	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_21423100_21423200
PB_novel_42227_0	chr9	+	173	1	Intergenic	novelGene_7885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAGCCAACAAA	NA	False	NA	NA	False	NA	NA	NA	21452656	21452829	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_21452700_21452800
PB_novel_42230_0	chr9	-	175	1	Intergenic	novelGene_7886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	21468255	21468080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21468100_21468300
PB_novel_42239_0	chr9	+	157	1	Intergenic	novelGene_7887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATCTTTTACAAAAATTAC	4199	False	NA	NA	False	NA	NA	NA	21541428	21541585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_21541400_21541600
PB_novel_42242_0	chr9	-	176	1	Intergenic	novelGene_7888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAATCAAGA	NA	False	NA	NA	False	NA	NA	NA	21593512	21593336	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21593300_21593500
PB_novel_42245_0	chr9	-	1455	1	Intergenic	novelGene_7889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	8087	False	NA	NA	False	NA	NA	NA	21608374	21606919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21606900_21608400
PB_novel_42246_0	chr9	+	170	1	Intergenic	novelGene_7890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21609765	21609935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_21609800_21609900
PB_novel_42254_0	chr9	+	181	1	Intergenic	novelGene_7891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATTACAGAGGA	6574	False	NA	NA	False	NA	NA	NA	21702197	21702378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_21702200_21702400
PB_novel_42255_0	chr9	-	3434	2	Genic_Genomic	ENSMUSG00000032198.10	novel	6880	50	NA	NA	4014	-1853	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21740909	21737394	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_-_21739605_21739685
PB_novel_42255_1	chr9	-	2756	1	Intergenic	novelGene_7892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21740148	21737392	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21737400_21740100
PB_novel_42256_0	chr9	+	176	1	Intergenic	novelGene_7893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGATAT	3119	False	NA	NA	False	NA	NA	NA	21738789	21738965	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_21738800_21739000
PB_novel_42266_0	chr9	-	170	1	Intergenic	novelGene_7894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTCTTAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	21876014	21875844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_21875800_21876000
PB_novel_42271_2	chr9	+	175	1	Intergenic	novelGene_7896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21987029	21987204	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_21987000_21987200
PB_novel_42271_3	chr9	+	175	2	Intergenic	novelGene_7895	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	21987027	22178589	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_21987175_22178561
PB_novel_42275_1	chr9	-	176	1	Intergenic	novelGene_7898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	1712	False	NA	NA	False	NA	NA	NA	22134065	22133889	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_22133900_22134100
PB_novel_42278_0	chr9	+	176	1	Intergenic	novelGene_7897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22053192	22053368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_22053200_22053400
PB_novel_42280_0	chr9	-	172	1	Antisense	novelGene_ENSMUSG00000074472.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAGAATGA	4190	False	NA	NA	False	NA	NA	NA	22112958	22112786	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_22112800_22113000
PB_novel_42283_0	chr9	+	3089	1	NIC	ENSMUSG00000057982.9	novel	1800	3	NA	NA	6787	338	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7782	False	NA	NA	False	NA	NA	NA	22144051	22147140	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_22144100_22147100
PB_novel_42286_0	chr9	+	164	1	Intergenic	novelGene_7899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22178417	22178581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_22178400_22178600
PB_novel_42287_0	chr9	-	165	1	Intergenic	novelGene_7900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATTAAA	3726	False	NA	NA	False	NA	NA	NA	22182533	22182368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_22182400_22182500
PB_novel_42291_0	chr9	-	1980	1	Genic_Genomic	ENSMUSG00000066829.8	novel	NA	NA	NA	NA	-6	-15122	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22218950	22216970	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_-_22217000_22219000
PB_novel_42294_0	chr9	-	1158	1	FSM	ENSMUSG00000094627.3	ENSMUST00000178676.3	273	1	-94	-791	-94	791	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGCTTGGAAAAAAAAAAAA	7324	False	NA	NA	False	AATAAA	-14	NA	22232767	22231609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_22231600_22232800
PB_novel_42295_0	chr9	+	158	1	Intergenic	novelGene_7901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAAAATTTCCAC	NA	False	NA	NA	False	NA	NA	NA	22236765	22236923	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_22236800_22236900
PB_novel_42296_0	chr9	+	175	1	Intergenic	novelGene_7902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	22284728	22284903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_22284700_22284900
PB_novel_42300_0	chr9	-	233	1	Intergenic	novelGene_7903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACCTCTAACAACAAAAATAA	2167	False	NA	NA	False	NA	NA	NA	22319307	22319074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_22319100_22319300
PB_novel_42304_0	chr9	-	174	1	Intergenic	novelGene_7904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	22400103	22399929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_22399900_22400100
PB_novel_42308_0	chr9	+	176	1	Intergenic	novelGene_7905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGATAAAAATG	NA	False	NA	NA	False	NA	NA	NA	22770247	22770423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_22770200_22770400
PB_novel_42313_0	chr9	-	176	1	Intergenic	novelGene_7906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGATATA	NA	False	NA	NA	False	NA	NA	NA	24733622	24733446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_24733400_24733600
PB_novel_42322_0	chr9	-	170	1	Intergenic	novelGene_7907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATCTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25574981	25574811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_25574800_25575000
PB_novel_42323_0	chr9	-	171	1	Intergenic	novelGene_7908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACGAG	NA	False	NA	NA	False	NA	NA	NA	25800672	25800501	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_25800500_25800700
PB_novel_42325_0	chr9	-	178	1	Intergenic	novelGene_7909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	3860	False	NA	NA	False	NA	NA	NA	26876713	26876535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_26876500_26876700
PB_novel_42326_0	chr9	-	4736	1	NIC	ENSMUSG00000031969.17	novel	2885	11	NA	NA	-19	-3769	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	9270	False	NA	NA	False	NA	NA	NA	26910823	26906087	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_26906100_26910800
PB_novel_42329_0	chr9	+	4787	1	Antisense	novelGene_ENSMUSG00000031988.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26924219	26929006	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_26924200_26929000
PB_novel_42338_0	chr9	+	177	1	Intergenic	novelGene_7910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAAAAAAAAGAAGCA	NA	False	NA	NA	False	NA	NA	NA	28554713	28554890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_28554700_28554900
PB_novel_42343_0	chr9	+	175	1	Intergenic	novelGene_7911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	30469892	30470067	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_30469900_30470100
PB_novel_42345_0	chr9	+	176	1	Intergenic	novelGene_7912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAGTCAGA	NA	False	NA	NA	False	NA	NA	NA	30791544	30791720	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_30791500_30791700
PB_novel_42346_0	chr9	+	180	1	Intergenic	novelGene_7913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAAGGAACTTGGA	NA	False	NA	NA	False	NA	NA	NA	30857014	30857194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_30857000_30857200
PB_novel_42349_0	chr9	+	5599	1	Intergenic	novelGene_7914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30913947	30919546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_30913900_30919500
PB_novel_42352_0	chr9	-	2050	1	Intergenic	novelGene_7915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30955232	30953182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_30953200_30955200
PB_novel_42358_1	chr9	-	1022	1	Antisense	novelGene_ENSMUSG00000047412.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30983003	30981981	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_30982000_30983000
PB_novel_42362_0	chr9	-	4948	1	FSM	ENSMUSG00000031995.10	ENSMUST00000217404.2	3550	1	312	-1710	-306	1125	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGCAAAAAAAAAAAAAAAA	4213	False	NA	NA	False	NA	NA	NA	31014522	31009574	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_31009600_31014500
PB_novel_42363_0	chr9	+	147	1	Intergenic	novelGene_7916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTAAAGCATACAATAAATA	4914	False	NA	NA	False	NA	NA	NA	31076826	31076973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_31076800_31077000
PB_novel_42364_0	chr9	+	173	1	Intergenic	novelGene_7917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31090687	31090860	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_31090700_31090900
PB_novel_42365_0	chr9	+	1269	1	Intergenic	novelGene_7918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31119637	31120906	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_31119600_31120900
PB_novel_42371_0	chr9	-	167	1	Intergenic	novelGene_7919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9330	False	NA	NA	False	NA	NA	NA	31270837	31270670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_31270700_31270800
PB_novel_42373_0	chr9	+	166	1	Intergenic	novelGene_7920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTTAAAAAAAAAAA	-4	True	NA	NA	False	NA	NA	NA	31281243	31281409	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_31281200_31281400
PB_novel_42375_0	chr9	+	176	1	Intergenic	novelGene_7921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAATATGT	NA	False	NA	NA	False	NA	NA	NA	31295556	31295732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_31295600_31295700
PB_novel_42380_0	chr9	-	176	1	Intergenic	novelGene_7922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACTCAGA	NA	False	NA	NA	False	NA	NA	NA	31404863	31404687	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_31404700_31404900
PB_novel_42386_0	chr9	+	139	1	Intergenic	novelGene_7923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAAGCAATCA	5906	False	NA	NA	False	NA	NA	NA	31911931	31912070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_31911900_31912100
PB_novel_42389_0	chr9	-	175	1	Intergenic	novelGene_7924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32010177	32010002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_32010000_32010200
PB_novel_42392_0	chr9	-	3117	1	Intergenic	novelGene_7925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAATAAAACA	NA	False	NA	NA	False	NA	NA	NA	32047581	32044464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_32044500_32047600
PB_novel_42394_0	chr9	+	163	1	Intergenic	novelGene_7926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAATCTAAAAAAATA	9375	False	NA	NA	False	NA	NA	NA	32087610	32087773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_32087600_32087800
PB_novel_42395_0	chr9	+	175	1	Intergenic	novelGene_7927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATAGTT	NA	False	NA	NA	False	NA	NA	NA	32106343	32106518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_32106300_32106500
PB_novel_42398_1	chr9	+	162	1	Intergenic	novelGene_7928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAAAAATCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	32862785	32862947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_32862800_32862900
PB_novel_42403_0	chr9	+	1980	1	FSM	ENSMUSG00000079884.7	ENSMUST00000182663.3	604	1	-84	-1292	-84	1292	mono-exon	FALSE	NA	NA	NA	NA	NA	2366	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAGTAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	33639458	33641438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_33639500_33641400
PB_novel_42409_0	chr9	+	187	1	Intergenic	novelGene_7929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	35012661	35012848	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_35012700_35012800
PB_novel_42417_0	chr9	-	176	1	Intergenic	novelGene_7930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAAATCTTTTAA	6507	False	NA	NA	False	NA	NA	NA	35112694	35112518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_35112500_35112700
PB_novel_42420_0	chr9	+	178	1	Intergenic	novelGene_7931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35239517	35239695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_35239500_35239700
PB_novel_42423_0	chr9	-	174	1	Intergenic	novelGene_7932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAATTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	35528257	35528083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_35528100_35528300
PB_novel_42427_0	chr9	-	176	1	Intergenic	novelGene_7933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAGAAACAAA	NA	False	NA	NA	False	NA	NA	NA	36403648	36403472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_36403500_36403600
PB_novel_42432_0	chr9	+	4863	1	Antisense	novelGene_ENSMUSG00000032116.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36648543	36653406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_36648500_36653400
PB_novel_42436_1	chr9	-	192	1	Intergenic	novelGene_7935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACACACATACACACAACCA	6724	False	NA	NA	False	NA	NA	NA	36724338	36724146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_36724100_36724300
PB_novel_42437_0	chr9	-	175	1	Intergenic	novelGene_7934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACTATTAAAAAAA	9336	False	NA	NA	False	NA	NA	NA	36720687	36720512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_36720500_36720700
PB_novel_42441_0	chr9	+	172	1	Intergenic	novelGene_7936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAAATTAAT	NA	False	NA	NA	False	NA	NA	NA	36814270	36814442	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_36814300_36814400
PB_novel_42444_2	chr9	+	181	1	Intergenic	novelGene_7938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAGAATTACTTAA	NA	False	NA	NA	False	NA	NA	NA	37360194	37360375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_37360200_37360400
PB_novel_42447_0	chr9	+	182	1	Intergenic	novelGene_7937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAGAATGAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37285442	37285624	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_37285400_37285600
PB_novel_42450_0	chr9	-	178	1	Intergenic	novelGene_7939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTACCT	NA	False	NA	NA	False	NA	NA	NA	37379650	37379472	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_37379500_37379600
PB_novel_42451_0	chr9	+	175	1	Intergenic	novelGene_7940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAACAAACAAACAAA	7331	False	NA	NA	False	NA	NA	NA	37393280	37393455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_37393300_37393500
PB_novel_42452_0	chr9	+	169	1	Intergenic	novelGene_7941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATATTAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	37396127	37396296	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_37396100_37396300
PB_novel_42462_0	chr9	+	175	1	Intergenic	novelGene_7942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAAAATATACT	NA	False	NA	NA	False	NA	NA	NA	39427904	39428079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_39427900_39428100
PB_novel_42463_0	chr9	-	179	1	Intergenic	novelGene_7943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAACAGTCCTTCTAA	NA	False	NA	NA	False	NA	NA	NA	39783994	39783815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_39783800_39784000
PB_novel_42464_0	chr9	+	179	1	Intergenic	novelGene_7944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAAGAT	NA	False	NA	NA	False	NA	NA	NA	39796297	39796476	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_39796300_39796500
PB_novel_42474_0	chr9	+	176	1	Intergenic	novelGene_7945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAACAAGGAA	2531	False	NA	NA	False	NA	NA	NA	40150691	40150867	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_40150700_40150900
PB_novel_42476_0	chr9	+	173	1	Intergenic	novelGene_7946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAGCAGG	NA	False	NA	NA	False	NA	NA	NA	40241366	40241539	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_40241400_40241500
PB_novel_42484_0	chr9	+	179	1	Intergenic	novelGene_7947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAGA	8224	False	NA	NA	False	NA	NA	NA	40704342	40704521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_40704300_40704500
PB_novel_42488_0	chr9	-	164	1	Intergenic	novelGene_7948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAGAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	40747223	40747059	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_40747100_40747200
PB_novel_42503_1	chr9	-	335	2	Intergenic	novelGene_7950	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAATAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	42600810	42600378	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_42600590_42600686
PB_novel_42503_2	chr9	-	436	2	Intergenic	novelGene_7949	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGTAAAGTAAAATTTAAA	NA	False	NA	NA	False	NA	NA	NA	42600839	42600345	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_42600596_42600653
PB_novel_42513_0	chr9	+	206	1	Intergenic	novelGene_7951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAATATATATA	NA	False	NA	NA	False	NA	NA	NA	43008111	43008317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_43008100_43008300
PB_novel_42514_0	chr9	-	3873	1	Intergenic	novelGene_7952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43014446	43010573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_43010600_43014400
PB_novel_42516_0	chr9	-	178	1	Intergenic	novelGene_7953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGGATTTCAAA	NA	False	NA	NA	False	NA	NA	NA	43033409	43033231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_43033200_43033400
PB_novel_42518_0	chr9	+	2115	1	Antisense	novelGene_ENSMUSG00000032015.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43055711	43057826	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_43055700_43057800
PB_novel_42525_0	chr9	-	175	1	Intergenic	novelGene_7954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAGAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	43176186	43176011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_43176000_43176200
PB_novel_42526_0	chr9	+	167	1	Intergenic	novelGene_7955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	43279529	43279696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_43279500_43279700
PB_novel_42527_0	chr9	-	180	1	Intergenic	novelGene_7956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATC	NA	False	NA	NA	False	NA	NA	NA	43389108	43388928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_43388900_43389100
PB_novel_42549_0	chr9	-	170	1	Intergenic	novelGene_7958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAAAAAAATACACAT	6075	False	NA	NA	False	NA	NA	NA	44142185	44142015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_44142000_44142200
PB_novel_42550_1	chr9	+	175	1	Intergenic	novelGene_7959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	269	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGACAGTA	NA	False	NA	NA	False	NA	NA	NA	44196734	44196909	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_44196700_44196900
PB_novel_42551_0	chr9	+	172	1	Antisense	novelGene_ENSMUSG00000032119.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAGAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	44206101	44206273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_44206100_44206300
PB_novel_42552_0	chr9	-	176	1	Intergenic	novelGene_7960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	44208276	44208100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_44208100_44208300
PB_novel_42555_0	chr9	+	166	1	Intergenic	novelGene_7961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	44273520	44273686	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_44273500_44273700
PB_novel_42557_0	chr9	-	165	1	Intergenic	novelGene_7962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAAAACAAACTATT	2985	False	NA	NA	False	NA	NA	NA	44276360	44276195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_44276200_44276400
PB_novel_42558_0	chr9	+	174	1	Intergenic	novelGene_7963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAGAAAAGAAAGTG	NA	False	NA	NA	False	NA	NA	NA	44284500	44284674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_44284500_44284700
PB_novel_42565_0	chr9	+	177	1	Intergenic	novelGene_7964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAGAAAGAA	6725	False	NA	NA	False	NA	NA	NA	44343019	44343196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_44343000_44343200
PB_novel_42569_0	chr9	-	176	1	Intergenic	novelGene_7965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6793	False	NA	NA	False	NA	NA	NA	44426138	44425962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_44426000_44426100
PB_novel_42571_0	chr9	-	175	1	Intergenic	novelGene_7966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	44458056	44457881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_44457900_44458100
PB_novel_42572_0	chr9	+	175	1	Intergenic	novelGene_7967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	44472561	44472736	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_44472600_44472700
PB_novel_42576_0	chr9	-	177	1	Intergenic	novelGene_7968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATCCCA	NA	False	NA	NA	False	NA	NA	NA	44488829	44488652	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_44488700_44488800
PB_novel_42579_0	chr9	-	180	1	Intergenic	novelGene_7969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9270	False	NA	NA	False	NA	NA	NA	44500915	44500735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_44500700_44500900
PB_novel_42580_0	chr9	-	180	1	Intergenic	novelGene_7970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGGAAGAAAGAGAGAGAGA	2762	False	NA	NA	False	NA	NA	NA	44507423	44507243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_44507200_44507400
PB_novel_42581_0	chr9	+	170	1	Intergenic	novelGene_7971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAGATTATTATATATA	NA	False	NA	NA	False	NA	NA	NA	44513777	44513947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_44513800_44513900
PB_novel_42583_0	chr9	-	176	1	Intergenic	novelGene_7972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTCA	3644	False	NA	NA	False	NA	NA	NA	44522865	44522689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_44522700_44522900
PB_novel_42587_1	chr9	-	176	1	Intergenic	novelGene_7974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACCAAACAA	NA	False	NA	NA	False	NA	NA	NA	44682630	44682454	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_44682500_44682600
PB_novel_42590_0	chr9	+	168	1	Intergenic	novelGene_7973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAATAATTAAAAAAAAAA	8380	False	NA	NA	False	NA	NA	NA	44649733	44649901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_44649700_44649900
PB_novel_42592_0	chr9	-	177	1	Intergenic	novelGene_7976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	44850211	44850034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_44850000_44850200
PB_novel_42602_0	chr9	+	176	1	Antisense	novelGene_ENSMUSG00000038717.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAATTATAGATATA	NA	False	NA	NA	False	NA	NA	NA	44827869	44828045	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_44827900_44828000
PB_novel_42603_0	chr9	+	170	1	Intergenic	novelGene_7975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAACAAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44832944	44833114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_44832900_44833100
PB_novel_42619_0	chr9	+	4613	1	Antisense	novelGene_ENSMUSG00000042790.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45800329	45804942	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_45800300_45804900
PB_novel_42625_0	chr9	-	177	1	Intergenic	novelGene_7977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGTAAATAAATAA	9593	False	NA	NA	False	NA	NA	NA	45935585	45935408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_45935400_45935600
PB_novel_42641_0	chr9	-	174	1	Intergenic	novelGene_7978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAATACAACAAATGT	NA	False	NA	NA	False	NA	NA	NA	46278514	46278340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_46278300_46278500
PB_novel_42646_0	chr9	-	180	1	Intergenic	novelGene_7979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAATCCCAGTTTA	NA	False	NA	NA	False	NA	NA	NA	47293637	47293457	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_47293500_47293600
PB_novel_42652_0	chr9	-	2187	1	Intergenic	novelGene_7980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAACAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-18	NA	47613536	47611349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_47611300_47613500
PB_novel_42654_0	chr9	+	3094	1	NIC	ENSMUSG00000032076.21	novel	4482	10	NA	NA	280566	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	214	False	NA	NA	False	NA	NA	NA	47722236	47725330	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_47722200_47725300
PB_novel_42663_0	chr9	+	175	1	Intergenic	novelGene_7981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	48220471	48220646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_48220500_48220600
PB_novel_42665_0	chr9	+	176	1	Intergenic	novelGene_7982	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATAAGTCAGGTT	NA	False	NA	NA	False	NA	NA	NA	48373515	48373691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_48373500_48373700
PB_novel_42676_0	chr9	-	177	1	Intergenic	novelGene_7983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATT	4633	False	NA	NA	False	NA	NA	NA	48831707	48831530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_48831500_48831700
PB_novel_42681_0	chr9	+	170	1	Intergenic	novelGene_7984	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	48912201	48912371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_48912200_48912400
PB_novel_42682_0	chr9	-	3788	1	Antisense	novelGene_ENSMUSG00000032267.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48917674	48913886	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_48913900_48917700
PB_novel_42685_0	chr9	+	177	1	Intergenic	novelGene_7985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAAGTTGC	NA	False	NA	NA	False	NA	NA	NA	48942617	48942794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_48942600_48942800
PB_novel_42690_0	chr9	-	175	1	Intergenic	novelGene_7986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48983913	48983738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_48983700_48983900
PB_novel_42694_0	chr9	-	180	1	Intergenic	novelGene_7987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAATTAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	49115876	49115696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_49115700_49115900
PB_novel_42700_0	chr9	+	3655	1	Intergenic	novelGene_7988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATCTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-10	NA	49702101	49705756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_49702100_49705800
PB_novel_42704_0	chr9	-	171	1	Intergenic	novelGene_7989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	50078006	50077835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_50077800_50078000
PB_novel_42709_0	chr9	-	176	2	Intergenic	novelGene_7990	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGATAAGGATTAA	NA	False	NA	NA	False	NA	NA	NA	50562525	50529089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_50529099_50562358
PB_novel_42711_0	chr9	+	169	1	Intergenic	novelGene_7991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAATAAATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50647960	50648129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_50648000_50648100
PB_novel_42716_0	chr9	+	175	1	Intergenic	novelGene_7992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTAAAAAAAAATCACAG	NA	False	NA	NA	False	NA	NA	NA	50827154	50827329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_50827200_50827300
PB_novel_42718_0	chr9	+	177	1	Intergenic	novelGene_7993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATTTTATCGAA	9969	False	NA	NA	False	NA	NA	NA	51666831	51667008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_51666800_51667000
PB_novel_42723_0	chr9	+	167	1	Intergenic	novelGene_7994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTACAAAAACTAAACAAAAA	5870	False	NA	NA	False	NA	NA	NA	51968781	51968948	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_51968800_51968900
PB_novel_42727_0	chr9	-	178	1	Intergenic	novelGene_7995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	52062841	52062663	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_52062700_52062800
PB_novel_42728_0	chr9	+	5119	1	Intergenic	novelGene_7996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	3812	False	NA	NA	False	NA	NA	NA	52073562	52078681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_52073600_52078700
PB_novel_42735_0	chr9	-	176	1	Intergenic	novelGene_7997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	53166244	53166068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_53166100_53166200
PB_novel_42739_0	chr9	-	3851	1	Intergenic	novelGene_7998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	53256961	53253110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_53253100_53257000
PB_novel_42750_0	chr9	-	154	1	Intergenic	novelGene_7999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATACAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	53389967	53389813	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_53389800_53390000
PB_novel_42756_1	chr9	-	176	1	Intergenic	novelGene_8000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATTAAACAATATAT	NA	False	NA	NA	False	NA	NA	NA	53512561	53512385	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_53512400_53512600
PB_novel_42758_0	chr9	-	171	1	Intergenic	novelGene_8001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	53514224	53514053	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_53514100_53514200
PB_novel_42761_0	chr9	+	176	1	Intergenic	novelGene_8002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAGAAAGATT	NA	False	NA	NA	False	NA	NA	NA	53535195	53535371	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_53535200_53535400
PB_novel_42763_0	chr9	+	171	1	Intergenic	novelGene_8003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATATTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53587665	53587836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_53587700_53587800
PB_novel_42769_0	chr9	-	175	1	Intergenic	novelGene_8004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAGAAGAGGAGG	NA	False	NA	NA	False	NA	NA	NA	53619795	53619620	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_53619600_53619800
PB_novel_42770_0	chr9	+	127	1	Intergenic	novelGene_8005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53657952	53658079	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_53658000_53658100
PB_novel_42771_0	chr9	-	172	1	Intergenic	novelGene_8006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAAAAGCAAAGT	NA	False	NA	NA	False	NA	NA	NA	53709314	53709142	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_53709100_53709300
PB_novel_42779_0	chr9	+	176	1	Intergenic	novelGene_8007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGTGACAG	NA	False	NA	NA	False	NA	NA	NA	54373449	54373625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_54373400_54373600
PB_novel_42782_0	chr9	-	176	1	Intergenic	novelGene_8008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAGTGA	9977	False	NA	NA	False	NA	NA	NA	54491861	54491685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_54491700_54491900
PB_novel_42786_0	chr9	-	174	1	Intergenic	novelGene_8009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTAAAAAAAAGAAAAAAAAG	2322	False	NA	NA	False	NA	NA	NA	54644902	54644728	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_54644700_54644900
PB_novel_42787_0	chr9	+	180	1	Intergenic	novelGene_8010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	54654601	54654781	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_54654600_54654800
PB_novel_42794_0	chr9	-	172	1	Intergenic	novelGene_8011	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATAAATCTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	54766594	54766422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_54766400_54766600
PB_novel_42796_0	chr9	-	1935	1	Antisense	novelGene_ENSMUSG00000032293.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTCAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	54792903	54790968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_54791000_54792900
PB_novel_42799_0	chr9	-	131	1	Intergenic	novelGene_8012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTTAAAACAAACAAAAAA	74	False	NA	NA	False	NA	NA	NA	54849992	54849861	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_54849900_54850000
PB_novel_42803_0	chr9	+	173	1	Intergenic	novelGene_8013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGACCCAGCAT	NA	False	NA	NA	False	NA	NA	NA	54935041	54935214	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_54935000_54935200
PB_novel_42805_0	chr9	+	189	1	Intergenic	novelGene_8014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55023986	55024175	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_55024000_55024200
PB_novel_42806_0	chr9	+	179	1	Intergenic	novelGene_8015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	55024346	55024525	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_55024300_55024500
PB_novel_42807_1	chr9	-	176	1	Intergenic	novelGene_8018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	9970	False	NA	NA	False	NA	NA	NA	55140022	55139846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_55139800_55140000
PB_novel_42808_0	chr9	+	184	1	Intergenic	novelGene_8016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAATTGTTTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55049419	55049603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_55049400_55049600
PB_novel_42815_0	chr9	+	176	1	Intergenic	novelGene_8017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	55135822	55135998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_55135800_55136000
PB_novel_42817_0	chr9	+	176	1	Intergenic	novelGene_8019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	55254591	55254767	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_55254600_55254800
PB_novel_42819_0	chr9	-	2712	1	Intergenic	novelGene_8020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55376438	55373726	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_55373700_55376400
PB_novel_42824_0	chr9	+	176	1	Intergenic	novelGene_8021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATAGATGAC	3049	False	NA	NA	False	NA	NA	NA	55941329	55941505	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_55941300_55941500
PB_novel_42831_0	chr9	+	179	1	Intergenic	novelGene_8022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56358585	56358764	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_56358600_56358800
PB_novel_42833_0	chr9	-	155	1	Intergenic	novelGene_8023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAAATCTAAAAA	NA	False	NA	NA	False	NA	NA	NA	56422246	56422091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_56422100_56422200
PB_novel_42837_0	chr9	-	177	1	Intergenic	novelGene_8024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56649936	56649759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_56649800_56649900
PB_novel_42840_0	chr9	+	179	1	Intergenic	novelGene_8025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56810277	56810456	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_56810300_56810500
PB_novel_42845_0	chr9	+	159	1	Intergenic	novelGene_8026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAACACAACACTG	NA	False	NA	NA	False	NA	NA	NA	56844358	56844517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_56844400_56844500
PB_novel_42848_0	chr9	-	183	1	Intergenic	novelGene_8027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACACAGCACTAGTTAAA	1006	False	NA	NA	False	NA	NA	NA	56859485	56859302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_56859300_56859500
PB_novel_42849_0	chr9	-	160	1	Intergenic	novelGene_8028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAATAAATAAATCT	NA	False	NA	NA	False	NA	NA	NA	56863831	56863671	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_56863700_56863800
PB_novel_42854_0	chr9	-	167	1	Intergenic	novelGene_8029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	56909514	56909347	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_56909300_56909500
PB_novel_42856_0	chr9	+	174	1	Intergenic	novelGene_8030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	56935372	56935546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_56935400_56935500
PB_novel_42868_0	chr9	+	172	1	Intergenic	novelGene_8031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAGTAAC	4865	False	NA	NA	False	NA	NA	NA	57085945	57086117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_57085900_57086100
PB_novel_42879_0	chr9	-	176	1	Intergenic	novelGene_8032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	57217972	57217796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_57217800_57218000
PB_novel_42883_0	chr9	+	1443	1	Antisense	novelGene_ENSMUSG00000063849.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57331944	57333387	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_57331900_57333400
PB_novel_42894_0	chr9	-	167	1	Intergenic	novelGene_8033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAGAAA	9595	False	NA	NA	False	NA	NA	NA	57438127	57437960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_57438000_57438100
PB_novel_42896_0	chr9	+	175	2	Intergenic	novelGene_8035	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAATAAAGA	NA	False	NA	NA	False	NA	NA	NA	57463861	57482820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_57463985_57482768
PB_novel_42896_1	chr9	+	167	1	Intergenic	novelGene_8034	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57463861	57464028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_57463900_57464000
PB_novel_42899_0	chr9	-	164	1	Intergenic	novelGene_8036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	614	False	NA	NA	False	NA	NA	NA	57480436	57480272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_57480300_57480400
PB_novel_42900_0	chr9	+	175	1	Intergenic	novelGene_8037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAACAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	57482434	57482609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_57482400_57482600
PB_novel_42904_0	chr9	+	3730	1	Intergenic	novelGene_8038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAATGATCAAAAAAAAA	6304	False	NA	NA	False	NA	NA	NA	57547781	57551511	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_57547800_57551500
PB_novel_42905_0	chr9	+	171	1	Intergenic	novelGene_8039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGTAAATAAATCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	57556258	57556429	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_57556300_57556400
PB_novel_42906_0	chr9	+	189	1	Intergenic	novelGene_8040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	57557048	57557237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_57557000_57557200
PB_novel_42907_0	chr9	+	175	1	Intergenic	novelGene_8041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAGAAACCACA	8795	False	NA	NA	False	NA	NA	NA	57569801	57569976	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_57569800_57570000
PB_novel_42908_0	chr9	-	161	1	Intergenic	novelGene_8042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	57570695	57570534	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_57570500_57570700
PB_novel_42910_0	chr9	-	156	1	Intergenic	novelGene_8043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAGAAAGAAAGA	3330	False	NA	NA	False	NA	NA	NA	57762891	57762735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_57762700_57762900
PB_novel_42913_0	chr9	+	161	1	Intergenic	novelGene_8044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAATAAATAAATATT	2159	False	NA	NA	False	NA	NA	NA	57829449	57829610	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_57829400_57829600
PB_novel_42916_0	chr9	+	176	1	Intergenic	novelGene_8045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAATCTTACCTCTC	NA	False	NA	NA	False	NA	NA	NA	58077170	58077346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_58077200_58077300
PB_novel_42917_0	chr9	-	176	1	Intergenic	novelGene_8046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	2225	False	NA	NA	False	NA	NA	NA	58100089	58099913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58099900_58100100
PB_novel_42918_0	chr9	+	4916	1	FSM	ENSMUSG00000057818.9	ENSMUST00000178259.2	517	1	-4151	-248	990	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAGTAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-22	NA	58111169	58116085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_58111200_58116100
PB_novel_42919_0	chr9	-	3054	1	NIC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	6016	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACACACACACAAAAAAAAAA	NA	False	NA	-3	True	GGGGCT	-38	NA	58131394	58128340	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_58128300_58131400
PB_novel_42927_0	chr9	-	177	1	Intergenic	novelGene_8047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTCACGGG	NA	False	NA	NA	False	NA	NA	NA	58166914	58166737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58166700_58166900
PB_novel_42928_0	chr9	-	183	1	Intergenic	novelGene_8048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	58170725	58170542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58170500_58170700
PB_novel_42933_0	chr9	-	175	1	Intergenic	novelGene_8049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAAGA	9798	False	NA	NA	False	NA	NA	NA	58188653	58188478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58188500_58188700
PB_novel_42935_0	chr9	-	178	1	Intergenic	novelGene_8050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAAGATGGGC	2920	False	NA	NA	False	NA	NA	NA	58201458	58201280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58201300_58201500
PB_novel_42936_1	chr9	-	177	1	Intergenic	novelGene_8051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACAGCAAG	NA	False	NA	NA	False	NA	NA	NA	58208017	58207840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58207800_58208000
PB_novel_42946_2	chr9	-	176	1	Intergenic	novelGene_8052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58488162	58487986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58488000_58488200
PB_novel_42947_0	chr9	-	177	1	Intergenic	novelGene_8053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAATACAAGA	NA	False	NA	NA	False	NA	NA	NA	58497772	58497595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58497600_58497800
PB_novel_42949_0	chr9	-	2551	1	Intergenic	novelGene_8054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58509220	58506669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58506700_58509200
PB_novel_42952_0	chr9	-	171	1	Intergenic	novelGene_8055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	304	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58535754	58535583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58535600_58535800
PB_novel_42955_0	chr9	-	173	1	Intergenic	novelGene_8056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	7936	False	NA	NA	False	NA	NA	NA	58574145	58573972	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58574000_58574100
PB_novel_42957_0	chr9	-	192	1	Intergenic	novelGene_8057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	58621330	58621138	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_58621100_58621300
PB_novel_42967_0	chr9	+	176	1	Intergenic	novelGene_8058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	59118368	59118544	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_59118400_59118500
PB_novel_42969_2	chr9	-	847	2	Intergenic	novelGene_8059	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGCAAAAATAAAAAAAA	NA	False	NA	NA	False	AATAAA	-42	NA	59182492	59181521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_59182170_59182293
PB_novel_42978_1	chr9	+	167	1	Intergenic	novelGene_8060	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAGCAAACAAATAAATAAA	130	False	NA	NA	False	NA	NA	NA	59356002	59356169	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_59356000_59356200
PB_novel_42981_0	chr9	-	179	1	Intergenic	novelGene_8062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAATACTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59415095	59414916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_59414900_59415100
PB_novel_42982_0	chr9	+	132	1	Intergenic	novelGene_8063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59419134	59419266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_59419100_59419300
PB_novel_42989_0	chr9	-	172	1	Intergenic	novelGene_8064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGTGTACC	6550	False	NA	NA	False	NA	NA	NA	59480113	59479941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_59479900_59480100
PB_novel_42993_0	chr9	+	169	1	Genic_Genomic	ENSMUSG00000025237.17	novel	NA	NA	NA	NA	-128	-3266	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	59528710	59528879	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_+_59528700_59528900
PB_novel_43004_0	chr9	-	175	1	Intergenic	novelGene_8065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59664449	59664274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_59664300_59664400
PB_novel_43007_0	chr9	+	194	1	Intergenic	novelGene_8066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCTTAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	59693688	59693882	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_59693700_59693900
PB_novel_43008_0	chr9	+	170	1	Intergenic	novelGene_8067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATTCTTTAAAAAAAA	743	False	NA	NA	False	NA	NA	NA	59710206	59710376	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_59710200_59710400
PB_novel_43010_0	chr9	+	183	1	Intergenic	novelGene_8068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAATGCAAATA	NA	False	NA	NA	False	NA	NA	NA	59746062	59746245	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_59746100_59746200
PB_novel_43015_0	chr9	-	1909	1	Intergenic	novelGene_8069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATACAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	59841447	59839538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_59839500_59841400
PB_novel_43020_0	chr9	-	171	1	Intergenic	novelGene_8070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAACAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	60525482	60525311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_60525300_60525500
PB_novel_43021_0	chr9	+	177	1	Intergenic	novelGene_8071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	60588686	60588863	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_60588700_60588900
PB_novel_43022_0	chr9	+	177	1	Intergenic	novelGene_8072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAGGCACAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	60684796	60684973	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_60684800_60685000
PB_novel_43039_0	chr9	+	173	1	Intergenic	novelGene_8073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61781193	61781366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_61781200_61781400
PB_novel_43040_0	chr9	+	168	1	Intergenic	novelGene_8074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATAAATGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	61786716	61786884	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_61786700_61786900
PB_novel_43050_0	chr9	+	177	1	Intergenic	novelGene_8075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5058	False	NA	NA	False	NA	NA	NA	61952059	61952236	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_61952100_61952200
PB_novel_43058_0	chr9	+	167	1	Intergenic	novelGene_8076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1010	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	62233713	62233880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_62233700_62233900
PB_novel_43060_0	chr9	-	176	1	Intergenic	novelGene_8077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	62306218	62306042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_62306000_62306200
PB_novel_43066_0	chr9	+	177	1	Intergenic	novelGene_8078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	62620932	62621109	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_62620900_62621100
PB_novel_43069_0	chr9	+	190	1	Intergenic	novelGene_8079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGACATC	NA	False	NA	NA	False	NA	NA	NA	62697895	62698085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_62697900_62698100
PB_novel_43070_0	chr9	+	3187	1	Antisense	novelGene_ENSMUSG00000032244.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62703410	62706597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_62703400_62706600
PB_novel_43071_0	chr9	-	176	1	Intergenic	novelGene_8080	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATTAAGGTAA	NA	False	NA	NA	False	NA	NA	NA	62709619	62709443	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_62709400_62709600
PB_novel_43075_0	chr9	-	178	1	Intergenic	novelGene_8081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATGTCA	NA	False	NA	NA	False	NA	NA	NA	62731932	62731754	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_62731800_62731900
PB_novel_43080_0	chr9	+	170	1	Intergenic	novelGene_8082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAATTAATA	8778	False	NA	NA	False	NA	NA	NA	62792307	62792477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_62792300_62792500
PB_novel_43084_1	chr9	-	180	1	Intergenic	novelGene_8084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	62836060	62835880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_62835900_62836100
PB_novel_43085_0	chr9	-	177	1	Intergenic	novelGene_8083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGACATTATAA	NA	False	NA	NA	False	NA	NA	NA	62827307	62827130	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_62827100_62827300
PB_novel_43090_0	chr9	-	176	1	Intergenic	novelGene_8085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAGAAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	62921915	62921739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_62921700_62921900
PB_novel_43091_0	chr9	+	179	1	Intergenic	novelGene_8086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAATATAGG	NA	False	NA	NA	False	NA	NA	NA	62962525	62962704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_62962500_62962700
PB_novel_43105_0	chr9	-	187	1	Intergenic	novelGene_8087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63325363	63325176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_63325200_63325400
PB_novel_43119_0	chr9	+	176	1	Intergenic	novelGene_8088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	64034774	64034950	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64034800_64035000
PB_novel_43122_2	chr9	+	175	1	Intergenic	novelGene_8089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAATGA	NA	False	NA	NA	False	NA	NA	NA	64047874	64048049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64047900_64048000
PB_novel_43125_0	chr9	+	1204	1	Intergenic	novelGene_8090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGTACAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64064119	64065323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64064100_64065300
PB_novel_43127_0	chr9	+	171	1	Intergenic	novelGene_8091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	64077224	64077395	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64077200_64077400
PB_novel_43131_0	chr9	-	175	1	Intergenic	novelGene_8092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAATTTAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	64098338	64098163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_64098200_64098300
PB_novel_43135_2	chr9	+	177	1	Intergenic	novelGene_8093	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64151852	64152029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64151900_64152000
PB_novel_43138_0	chr9	+	5161	2	Antisense	novelGene_ENSMUSG00000004936.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	64150201	64155578	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_64151851_64152066
PB_novel_43140_2	chr9	+	176	1	Intergenic	novelGene_8101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACTTTAAGAA	5246	False	NA	NA	False	NA	NA	NA	64286848	64287024	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64286800_64287000
PB_novel_43141_0	chr9	+	175	1	Intergenic	novelGene_8094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATAAATTTTAGA	NA	False	NA	NA	False	NA	NA	NA	64168558	64168733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64168600_64168700
PB_novel_43142_0	chr9	-	176	1	Intergenic	novelGene_8095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAATAAGAATAAAAA	9805	False	NA	NA	False	NA	NA	NA	64174486	64174310	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_64174300_64174500
PB_novel_43143_5	chr9	+	177	1	Intergenic	novelGene_8096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAATTAAACA	3555	False	NA	NA	False	NA	NA	NA	64182874	64183051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64182900_64183100
PB_novel_43144_0	chr9	+	176	1	Intergenic	novelGene_8100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	466	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64223921	64224097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64223900_64224100
PB_novel_43148_0	chr9	+	163	1	Intergenic	novelGene_8097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATCTAAAAAAAAAAAAAA	7158	False	NA	NA	False	NA	NA	NA	64186477	64186640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64186500_64186600
PB_novel_43150_0	chr9	+	1673	1	NIC	ENSMUSG00000032397.8	novel	352	4	NA	NA	36	-7134	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAAACAAAAC	9605	False	NA	NA	False	NA	NA	NA	64188924	64190597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_64188900_64190600
PB_novel_43152_0	chr9	-	336	1	Intergenic	novelGene_8098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAATAAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	64194052	64193716	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_64193700_64194100
PB_novel_43155_0	chr9	-	179	1	Intergenic	novelGene_8099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	64202320	64202141	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_64202100_64202300
PB_novel_43163_0	chr9	+	189	1	Intergenic	novelGene_8102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAAAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	64617797	64617986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64617800_64618000
PB_novel_43164_0	chr9	+	175	1	Intergenic	novelGene_8103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAACTTGCAACTTA	NA	False	NA	NA	False	NA	NA	NA	64620273	64620448	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_64620300_64620400
PB_novel_43168_0	chr9	-	180	1	Intergenic	novelGene_8104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAGAAACAATAAAGCCC	NA	False	NA	NA	False	NA	NA	NA	64649070	64648890	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_64648900_64649100
PB_novel_43171_0	chr9	-	1896	1	Intergenic	novelGene_8105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6478	False	NA	NA	False	AAGAAA	-44	NA	64731245	64729349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_64729300_64731200
PB_novel_43174_0	chr9	-	4276	1	Antisense	novelGene_ENSMUSG00000053641.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	4166	False	NA	NA	False	NA	NA	NA	64825959	64821683	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_64821700_64826000
PB_novel_43190_0	chr9	+	175	1	Intergenic	novelGene_8106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGTTAGGC	4959	False	NA	NA	False	NA	NA	NA	65026758	65026933	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65026800_65026900
PB_novel_43197_0	chr9	+	181	1	Intergenic	novelGene_8107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	65156444	65156625	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65156400_65156600
PB_novel_43198_0	chr9	+	192	1	Intergenic	novelGene_8108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGATAATATA	NA	False	NA	NA	False	NA	NA	NA	65164101	65164293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65164100_65164300
PB_novel_43201_0	chr9	+	177	1	Intergenic	novelGene_8109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAAAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	65226915	65227092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65226900_65227100
PB_novel_43202_0	chr9	+	158	1	Intergenic	novelGene_8110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAATAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	65227520	65227678	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65227500_65227700
PB_novel_43203_0	chr9	-	178	1	Intergenic	novelGene_8111	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAACCCAA	NA	False	NA	NA	False	NA	NA	NA	65238472	65238294	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_65238300_65238500
PB_novel_43205_0	chr9	-	176	1	Intergenic	novelGene_8112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	324	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65283370	65283194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_65283200_65283400
PB_novel_43207_0	chr9	+	1951	1	Intergenic	novelGene_8113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAAAAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	65285516	65287467	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65285500_65287500
PB_novel_43209_0	chr9	-	176	1	Intergenic	novelGene_8114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAAAATGTA	NA	False	NA	NA	False	NA	NA	NA	65346096	65345920	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_65345900_65346100
PB_novel_43216_1	chr9	+	170	1	Intergenic	novelGene_8115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGTGAGCA	NA	False	NA	NA	False	NA	NA	NA	65478745	65478915	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65478700_65478900
PB_novel_43217_2	chr9	+	173	1	Intergenic	novelGene_8116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	221	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAGAAAAAAAAAAACG	NA	False	NA	NA	False	NA	NA	NA	65481464	65481637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65481500_65481600
PB_novel_43219_0	chr9	+	175	1	Intergenic	novelGene_8117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	65490977	65491152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65491000_65491200
PB_novel_43221_0	chr9	+	170	1	Intergenic	novelGene_8118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65498321	65498491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65498300_65498500
PB_novel_43222_0	chr9	-	3536	1	Antisense	novelGene_ENSMUSG00000041064.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	9584	False	NA	NA	False	NA	NA	NA	65503128	65499592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_65499600_65503100
PB_novel_43223_0	chr9	+	187	1	Intergenic	novelGene_8119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATACTCT	NA	False	NA	NA	False	NA	NA	NA	65501359	65501546	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65501400_65501500
PB_novel_43224_0	chr9	+	176	1	Intergenic	novelGene_8120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGCATGATG	NA	False	NA	NA	False	NA	NA	NA	65503572	65503748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65503600_65503700
PB_novel_43229_3	chr9	-	172	1	Intergenic	novelGene_8123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAATAATAA	6010	False	NA	NA	False	NA	NA	NA	65574073	65573901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_65573900_65574100
PB_novel_43233_0	chr9	+	179	1	Intergenic	novelGene_8121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	65527867	65528046	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65527900_65528000
PB_novel_43237_0	chr9	-	479	1	Intergenic	novelGene_8122	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAGAAGAAAAAAAAAAA	9636	False	NA	NA	False	NA	NA	NA	65545901	65545422	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_65545400_65545900
PB_novel_43239_4	chr9	+	176	1	Intergenic	novelGene_8125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	651	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65716775	65716951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65716800_65717000
PB_novel_43242_0	chr9	+	180	1	Intergenic	novelGene_8124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATGAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	65713654	65713834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65713700_65713800
PB_novel_43249_0	chr9	+	175	1	Intergenic	novelGene_8126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65781842	65782017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65781800_65782000
PB_novel_43251_0	chr9	-	172	1	Intergenic	novelGene_8127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	65803387	65803215	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_65803200_65803400
PB_novel_43256_0	chr9	+	159	1	Intergenic	novelGene_8128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATATTTTTAAAAAAG	7403	False	NA	NA	False	NA	NA	NA	65921733	65921892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_65921700_65921900
PB_novel_43260_0	chr9	-	179	1	Intergenic	novelGene_8129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAACAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	65961210	65961031	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_65961000_65961200
PB_novel_43266_0	chr9	-	178	1	Intergenic	novelGene_8130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATAAATACATCTTTT	2570	False	NA	NA	False	NA	NA	NA	66124011	66123833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_66123800_66124000
PB_novel_43271_0	chr9	+	178	1	Intergenic	novelGene_8131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66390120	66390298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_66390100_66390300
PB_novel_43272_0	chr9	-	175	1	Intergenic	novelGene_8132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66395718	66395543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_66395500_66395700
PB_novel_43277_0	chr9	+	160	1	Intergenic	novelGene_8133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	66487969	66488129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_66488000_66488100
PB_novel_43278_0	chr9	+	173	1	Intergenic	novelGene_8134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATC	4766	False	NA	NA	False	NA	NA	NA	66517384	66517557	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_66517400_66517600
PB_novel_43279_0	chr9	-	131	1	Intergenic	novelGene_8135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAACAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	66562060	66561929	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_66561900_66562100
PB_novel_43280_0	chr9	+	179	1	Intergenic	novelGene_8136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGCAAG	NA	False	NA	NA	False	NA	NA	NA	66637245	66637424	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_66637200_66637400
PB_novel_43283_0	chr9	-	178	1	Intergenic	novelGene_8137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	66757616	66757438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_66757400_66757600
PB_novel_43285_0	chr9	-	183	1	Intergenic	novelGene_8138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAATAAAA	8198	False	NA	NA	False	NA	NA	NA	66839476	66839293	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_66839300_66839500
PB_novel_43286_0	chr9	-	186	1	Intergenic	novelGene_8139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATC	NA	False	NA	NA	False	NA	NA	NA	66851438	66851252	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_66851300_66851400
PB_novel_43294_0	chr9	-	2156	1	NIC	ENSMUSG00000032366.16	novel	1714	8	NA	NA	23	-7951	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66951166	66949010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_66949000_66951200
PB_novel_43297_0	chr9	+	172	1	Intergenic	novelGene_8140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATCTTTAACAAAAAAA	5217	False	NA	NA	False	NA	NA	NA	67053049	67053221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_67053000_67053200
PB_novel_43300_0	chr9	-	168	1	Intergenic	novelGene_8141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTTAAAAAAAAAAAAAGA	1415	False	NA	NA	False	NA	NA	NA	67265509	67265341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_67265300_67265500
PB_novel_43305_0	chr9	+	124	1	Intergenic	novelGene_8142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAATTA	NA	False	NA	NA	False	NA	NA	NA	67661435	67661559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_67661400_67661600
PB_novel_43353_0	chr9	-	172	1	Intergenic	novelGene_8143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	70430495	70430323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_70430300_70430500
PB_novel_43354_0	chr9	-	177	2	Antisense	novelGene_ENSMUSG00000064921.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	7652	False	NA	NA	False	NA	NA	NA	70535515	70430323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_70430421_70535435
PB_novel_43357_0	chr9	+	3869	1	NIC	ENSMUSG00000032212.11	novel	3755	21	NA	NA	-3	1912	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70450072	70453941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_70450100_70453900
PB_novel_43362_0	chr9	-	187	1	Intergenic	novelGene_8144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAGAAAGAAAGAAA	3109	False	NA	NA	False	NA	NA	NA	70485009	70484822	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_70484800_70485000
PB_novel_43370_0	chr9	+	144	1	Intergenic	novelGene_8145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	70675405	70675549	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_70675400_70675500
PB_novel_43380_0	chr9	+	170	1	Intergenic	novelGene_8146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71209522	71209692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_71209500_71209700
PB_novel_43391_0	chr9	+	170	1	Intergenic	novelGene_8147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71904995	71905165	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_71905000_71905200
PB_novel_43398_0	chr9	-	171	1	Intergenic	novelGene_8148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	72121742	72121571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_72121600_72121700
PB_novel_43400_0	chr9	+	177	1	Intergenic	novelGene_8149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAATTAAAAAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	72184764	72184941	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_72184800_72184900
PB_novel_43402_0	chr9	-	187	1	FSM	ENSMUSG00000098893.2	ENSMUST00000183380.2	799	1	791	-179	791	179	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	72199831	72199644	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_-_72199600_72199800
PB_novel_43409_0	chr9	-	177	1	Intergenic	novelGene_8150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	72336901	72336724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_72336700_72336900
PB_novel_43418_0	chr9	+	4012	1	Intergenic	novelGene_8151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGACAAAAAAAAAAAAA	5014	False	NA	NA	False	NA	NA	NA	72453720	72457732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_72453700_72457700
PB_novel_43420_4	chr9	+	181	1	Intergenic	novelGene_8152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	3033	False	NA	NA	False	NA	NA	NA	72464829	72465010	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_72464800_72465000
PB_novel_43425_0	chr9	-	173	1	Antisense	novelGene_ENSMUSG00000037674.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72512473	72512300	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_72512300_72512500
PB_novel_43426_1	chr9	-	3363	1	Genic_Genomic	ENSMUSG00000099051.2_ENSMUSG00000098573.2	novel	NA	NA	NA	NA	627	-1607	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72526175	72522812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_-_72522800_72526200
PB_novel_43427_0	chr9	+	258	1	Intergenic	novelGene_8153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTTTTTAAAAAAATT	2485	False	NA	NA	False	AATAAA	-2	NA	72540231	72540489	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_72540200_72540500
PB_novel_43431_0	chr9	+	174	1	Intergenic	novelGene_8154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATATTTAGAAAAAAAGAGA	2570	False	NA	NA	False	NA	NA	NA	72553694	72553868	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_72553700_72553900
PB_novel_43435_0	chr9	-	181	1	Intergenic	novelGene_8155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72574082	72573901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_72573900_72574100
PB_novel_43437_0	chr9	+	168	1	Intergenic	novelGene_8156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCTTAAAAAAAAAAAAAAAA	6223	False	NA	NA	False	NA	NA	NA	72587610	72587778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_72587600_72587800
PB_novel_43440_0	chr9	-	177	1	Intergenic	novelGene_8157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	72591302	72591125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_72591100_72591300
PB_novel_43447_0	chr9	+	172	1	Intergenic	novelGene_8158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAGAA	1408	False	NA	NA	False	NA	NA	NA	72672668	72672840	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_72672700_72672800
PB_novel_43449_0	chr9	-	184	1	Intergenic	novelGene_8159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4120	False	NA	NA	False	NA	NA	NA	72686925	72686741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_72686700_72686900
PB_novel_43453_0	chr9	+	173	1	Intergenic	novelGene_8160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72708976	72709149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_72709000_72709100
PB_novel_43456_0	chr9	-	159	1	Intergenic	novelGene_8161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTAAAAAAAAAATTGT	NA	False	NA	NA	False	NA	NA	NA	72731751	72731592	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_72731600_72731800
PB_novel_43461_0	chr9	-	180	1	Intergenic	novelGene_8162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAATGAAAGA	NA	False	NA	NA	False	NA	NA	NA	72794513	72794333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_72794300_72794500
PB_novel_43462_0	chr9	+	175	1	FSM	ENSMUSG00000102330.2	ENSMUST00000193259.2	1441	1	-139	1405	-139	-1405	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATAAGAGGGGA	NA	False	NA	NA	False	NA	NA	NA	72796187	72796362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_72796200_72796400
PB_novel_43469_0	chr9	-	177	1	Intergenic	novelGene_8163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAACTAAAATTAAAAAC	NA	False	NA	NA	False	NA	NA	NA	72899281	72899104	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_72899100_72899300
PB_novel_43473_0	chr9	+	174	1	Intergenic	novelGene_8164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAGTAAAAAA	7134	False	NA	NA	False	NA	NA	NA	72977374	72977548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_72977400_72977500
PB_novel_43477_0	chr9	-	161	1	Intergenic	novelGene_8165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAATAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	73020331	73020170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_73020200_73020300
PB_novel_43480_0	chr9	+	171	1	Intergenic	novelGene_8166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATCTTTTAAA	6130	False	NA	NA	False	NA	NA	NA	73051027	73051198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_73051000_73051200
PB_novel_43482_0	chr9	-	156	1	Intergenic	novelGene_8167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	73753193	73753037	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_73753000_73753200
PB_novel_43484_0	chr9	-	177	1	Intergenic	novelGene_8168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTTA	NA	False	NA	NA	False	NA	NA	NA	74040925	74040748	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_74040700_74040900
PB_novel_43485_0	chr9	+	169	1	Intergenic	novelGene_8169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	74069136	74069305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_74069100_74069300
PB_novel_43495_0	chr9	-	3337	1	Antisense	novelGene_ENSMUSG00000034593.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAATTAAAA	9679	False	NA	NA	False	NA	NA	NA	75062820	75059483	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_75059500_75062800
PB_novel_43509_0	chr9	-	177	1	Intergenic	novelGene_8170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75348269	75348092	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_75348100_75348300
PB_novel_43510_0	chr9	-	175	1	Intergenic	novelGene_8171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGACACAA	NA	False	NA	NA	False	NA	NA	NA	75353508	75353333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_75353300_75353500
PB_novel_43511_0	chr9	-	177	1	Intergenic	novelGene_8172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75354296	75354119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_75354100_75354300
PB_novel_43513_0	chr9	-	162	1	Intergenic	novelGene_8173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATAAATAAATATT	NA	False	NA	NA	False	NA	NA	NA	75358075	75357913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_75357900_75358100
PB_novel_43520_0	chr9	-	164	1	Intergenic	novelGene_8174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATATTAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	75543836	75543672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_75543700_75543800
PB_novel_43524_0	chr9	+	193	1	Intergenic	novelGene_8175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	75962881	75963074	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_75962900_75963100
PB_novel_43527_0	chr9	+	176	1	Intergenic	novelGene_8176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	76279157	76279333	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_76279200_76279300
PB_novel_43533_0	chr9	+	167	1	Intergenic	novelGene_8177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAAATCTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	77400583	77400750	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_77400600_77400800
PB_novel_43536_0	chr9	+	1712	1	NIC	ENSMUSG00000032350.10	novel	3423	16	NA	NA	35	-23264	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACGCT	4455	False	NA	NA	False	NA	NA	NA	77661851	77663563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_77661900_77663600
PB_novel_43539_0	chr9	-	177	1	Intergenic	novelGene_8178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77750123	77749946	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_77749900_77750100
PB_novel_43546_0	chr9	+	180	1	Intergenic	novelGene_8179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	78007935	78008115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78007900_78008100
PB_novel_43555_0	chr9	-	200	1	Intergenic	novelGene_8180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAAAGAAAACAAA	247	False	NA	NA	False	NA	NA	NA	78209047	78208847	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_78208800_78209000
PB_novel_43556_2	chr9	+	175	1	Intergenic	novelGene_8181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAATAATTGT	212	False	NA	NA	False	NA	NA	NA	78230897	78231072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78230900_78231100
PB_novel_43557_0	chr9	+	176	1	Intergenic	novelGene_8182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	78242092	78242268	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78242100_78242300
PB_novel_43558_0	chr9	-	181	1	Intergenic	novelGene_8183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	78257988	78257807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_78257800_78258000
PB_novel_43563_0	chr9	-	176	1	Intergenic	novelGene_8184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAACTACATTCTTT	NA	False	NA	NA	False	NA	NA	NA	78298136	78297960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_78298000_78298100
PB_novel_43564_6	chr9	-	177	1	Intergenic	novelGene_8195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAAAAAGAATGAA	5918	False	NA	NA	False	NA	NA	NA	78475819	78475642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_78475600_78475800
PB_novel_43565_0	chr9	+	181	1	Intergenic	novelGene_8185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAATAAGTCTTTAAAAAC	NA	False	NA	NA	False	NA	NA	NA	78305918	78306099	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78305900_78306100
PB_novel_43566_0	chr9	+	181	1	Intergenic	novelGene_8186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	78322253	78322434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78322300_78322400
PB_novel_43573_0	chr9	+	180	1	Intergenic	novelGene_8187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAACC	1971	False	NA	NA	False	NA	NA	NA	78371605	78371785	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78371600_78371800
PB_novel_43576_0	chr9	+	144	1	Intergenic	novelGene_8188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	78380354	78380498	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78380400_78380500
PB_novel_43577_1	chr9	-	173	1	Intergenic	novelGene_8189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATTAT	NA	False	NA	NA	False	NA	NA	NA	78383177	78383004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_78383000_78383200
PB_novel_43580_1	chr9	+	4976	1	Antisense	novelGene_ENSMUSG00000037742.15_AS_novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	78383684	78388660	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_78383700_78388700
PB_novel_43585_0	chr9	-	186	1	Intergenic	novelGene_8190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	78404788	78404602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_78404600_78404800
PB_novel_43587_0	chr9	+	194	1	Intergenic	novelGene_8191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAATAAAATATATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	78412806	78413000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78412800_78413000
PB_novel_43590_0	chr9	+	177	1	Intergenic	novelGene_8192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	78424740	78424917	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78424700_78424900
PB_novel_43595_0	chr9	+	179	1	Intergenic	novelGene_8193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAAAC	2809	False	NA	NA	False	NA	NA	NA	78451019	78451198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78451000_78451200
PB_novel_43596_0	chr9	+	175	1	Intergenic	novelGene_8194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAGAAAAAAAAAGATTAA	9943	False	NA	NA	False	NA	NA	NA	78458153	78458328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78458200_78458300
PB_novel_43601_0	chr9	+	205	1	Intergenic	novelGene_8196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6317	False	NA	NA	False	NA	NA	NA	78527045	78527250	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_78527000_78527200
PB_novel_43608_0	chr9	+	167	1	Intergenic	novelGene_8197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAATAGGCCTACTA	NA	False	NA	NA	False	NA	NA	NA	79668311	79668478	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_79668300_79668500
PB_novel_43611_0	chr9	-	273	1	Intergenic	novelGene_8198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	79993978	79993705	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_79993700_79994000
PB_novel_43622_0	chr9	-	171	1	Intergenic	novelGene_8199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81459496	81459325	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_81459300_81459500
PB_novel_43624_0	chr9	-	176	1	Intergenic	novelGene_8200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAGAAAACTTA	NA	False	NA	NA	False	NA	NA	NA	81974911	81974735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_81974700_81974900
PB_novel_43626_0	chr9	+	4229	1	Intergenic	novelGene_8201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAACAAACTAAAAA	NA	False	NA	NA	False	NA	NA	NA	82816849	82821078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_82816800_82821100
PB_novel_43651_0	chr9	+	198	1	Intergenic	novelGene_8202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTATTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85628388	85628586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_85628400_85628600
PB_novel_43654_0	chr9	-	184	1	Intergenic	novelGene_8203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	86258262	86258078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_86258100_86258300
PB_novel_43665_0	chr9	+	3588	2	Intergenic	novelGene_8204	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87072838	87165516	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_87075208_87164297
PB_novel_43667_0	chr9	+	178	1	Intergenic	novelGene_8205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	87526789	87526967	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_87526800_87527000
PB_novel_43669_0	chr9	-	161	1	Intergenic	novelGene_8206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	87988062	87987901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_87987900_87988100
PB_novel_43674_0	chr9	+	2500	1	Intergenic	novelGene_8207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88306857	88309357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_88306900_88309400
PB_novel_43676_0	chr9	-	182	1	Intergenic	novelGene_8208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAACAAAAACAATGTG	4367	False	NA	NA	False	NA	NA	NA	88375886	88375704	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_88375700_88375900
PB_novel_43680_0	chr9	+	172	1	Intergenic	novelGene_8209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGGAAAAAAAAAAAAGTAC	NA	False	NA	NA	False	NA	NA	NA	88437409	88437581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_88437400_88437600
PB_novel_43682_0	chr9	+	176	1	Intergenic	novelGene_8210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAATATAAAAG	NA	False	NA	NA	False	NA	NA	NA	88453533	88453709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_88453500_88453700
PB_novel_43689_0	chr9	-	169	1	Intergenic	novelGene_8211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	88493615	88493446	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_88493400_88493600
PB_novel_43692_0	chr9	-	177	1	Intergenic	novelGene_8212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAAAGAATAAT	NA	False	NA	NA	False	NA	NA	NA	88621035	88620858	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_88620900_88621000
PB_novel_43707_0	chr9	-	146	1	Intergenic	novelGene_8213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAATATAAA	NA	False	NA	NA	False	NA	NA	NA	88983857	88983711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_88983700_88983900
PB_novel_43709_0	chr9	-	4492	1	Antisense	novelGene_ENSMUSG00000066442.18_AS_novelGene_ENSMUSG00000100838.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	GGGGCT	-34	NA	89098182	89093690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_89093700_89098200
PB_novel_43715_0	chr9	-	172	1	Intergenic	novelGene_8214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	89965826	89965654	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_89965700_89965800
PB_novel_43717_0	chr9	+	2656	1	Antisense	novelGene_ENSMUSG00000062270.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	89971295	89973951	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_89971300_89974000
PB_novel_43723_0	chr9	-	177	1	Intergenic	novelGene_8215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTTAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90020970	90020793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_90020800_90021000
PB_novel_43724_0	chr9	+	176	1	Intergenic	novelGene_8216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAGTAGTC	NA	False	NA	NA	False	NA	NA	NA	90100027	90100203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_90100000_90100200
PB_novel_43725_0	chr9	-	177	1	Intergenic	novelGene_8217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAATTGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90180719	90180542	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_90180500_90180700
PB_novel_43728_0	chr9	+	177	1	Intergenic	novelGene_8218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATTTAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	91221735	91221912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_91221700_91221900
PB_novel_43735_0	chr9	+	2330	1	NIC	ENSMUSG00000032369.14	novel	2302	9	NA	NA	-98	-19402	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGCAAAAAGGAAAAAAGAA	NA	False	NA	NA	False	GGGGCT	-13	NA	92132296	92134626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_+_92132300_92134600
PB_novel_43736_0	chr9	-	2140	1	Antisense	novelGene_ENSMUSG00000032369.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92147673	92145533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_92145500_92147700
PB_novel_43737_0	chr9	-	6001	1	Intergenic	novelGene_8219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	914	False	NA	NA	False	NA	NA	NA	92435618	92429617	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_92429600_92435600
PB_novel_43749_0	chr9	+	2625	1	Intergenic	novelGene_8220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95330937	95333562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_95330900_95333600
PB_novel_43750_0	chr9	+	2651	1	Antisense	novelGene_ENSMUSG00000032407.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95342006	95344657	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_95342000_95344700
PB_novel_43752_0	chr9	-	177	1	Intergenic	novelGene_8221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGATTTTGAACT	NA	False	NA	NA	False	NA	NA	NA	95373050	95372873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_95372900_95373000
PB_novel_43759_0	chr9	-	174	1	Intergenic	novelGene_8222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	8672	False	NA	NA	False	NA	NA	NA	95503230	95503056	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_95503100_95503200
PB_novel_43765_0	chr9	-	176	1	Intergenic	novelGene_8223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAAACTTCGG	NA	False	NA	NA	False	NA	NA	NA	95676953	95676777	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_95676800_95677000
PB_novel_43767_0	chr9	+	170	1	Intergenic	novelGene_8224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAGACTTT	NA	False	NA	NA	False	NA	NA	NA	95729625	95729795	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_95729600_95729800
PB_novel_43772_0	chr9	-	180	1	Intergenic	novelGene_8225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATTAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	95896664	95896484	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_95896500_95896700
PB_novel_43773_0	chr9	-	141	1	Antisense	novelGene_ENSMUSG00000032410.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAGAATAAATAAATCTTAA	NA	False	NA	NA	False	NA	NA	NA	95900724	95900583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_95900600_95900700
PB_novel_43777_0	chr9	-	164	1	Intergenic	novelGene_8226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAATTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95942800	95942636	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_95942600_95942800
PB_novel_43782_0	chr9	+	166	1	Intergenic	novelGene_8227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	96069534	96069700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_96069500_96069700
PB_novel_43800_0	chr9	-	159	1	Intergenic	novelGene_8228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	96249878	96249719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_96249700_96249900
PB_novel_43806_0	chr9	+	178	1	Intergenic	novelGene_8229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAGAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	96314205	96314383	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_96314200_96314400
PB_novel_43811_0	chr9	+	184	1	Intergenic	novelGene_8230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	529	False	NA	NA	False	NA	NA	NA	96392844	96393028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_96392800_96393000
PB_novel_43815_0	chr9	+	174	1	Intergenic	novelGene_8231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	96507340	96507514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_96507300_96507500
PB_novel_43818_0	chr9	-	174	1	Intergenic	novelGene_8232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAATCCCTCCTGCA	NA	False	NA	NA	False	NA	NA	NA	96586601	96586427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_96586400_96586600
PB_novel_43819_0	chr9	+	5631	1	Genic_Genomic	ENSMUSG00000102097.2	novel	NA	NA	NA	NA	1687	1696	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96589567	96595198	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_+_96589600_96595200
PB_novel_43829_0	chr9	-	176	1	Intergenic	novelGene_8233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	96952524	96952348	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_96952300_96952500
PB_novel_43832_0	chr9	+	176	1	Intergenic	novelGene_8234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAACATACTTGAGGA	NA	False	NA	NA	False	NA	NA	NA	96955799	96955975	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_96955800_96956000
PB_novel_43833_0	chr9	+	4502	4	Intergenic	novelGene_8235	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-32	NA	96958484	96972880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_96961295_96962247_96962535_96967108_96967175_96971541
PB_novel_43836_0	chr9	+	1335	1	Antisense	novelGene_ENSMUSG00000032449.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-32	NA	96971545	96972880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_96971500_96972900
PB_novel_43840_0	chr9	-	171	1	Intergenic	novelGene_8236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97032871	97032700	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_97032700_97032900
PB_novel_43843_0	chr9	+	177	1	Intergenic	novelGene_8237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGTCA	NA	False	NA	NA	False	NA	NA	NA	98002934	98003111	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_98002900_98003100
PB_novel_43845_0	chr9	+	184	1	Intergenic	novelGene_8238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	98255686	98255870	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_98255700_98255900
PB_novel_43846_0	chr9	+	176	1	Intergenic	novelGene_8239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAGACCT	NA	False	NA	NA	False	NA	NA	NA	98326050	98326226	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_98326000_98326200
PB_novel_43849_0	chr9	-	168	1	Intergenic	novelGene_8240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAACTCTCAGA	NA	False	NA	NA	False	NA	NA	NA	98613048	98612880	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_98612900_98613000
PB_novel_43859_0	chr9	+	176	1	Intergenic	novelGene_8241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAGACCAAATAT	NA	False	NA	NA	False	NA	NA	NA	98826158	98826334	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_98826200_98826300
PB_novel_43861_0	chr9	+	174	1	Intergenic	novelGene_8242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTACAAAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	98971660	98971834	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_98971700_98971800
PB_novel_43864_0	chr9	+	392	1	Intergenic	novelGene_8243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99052660	99053052	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_99052700_99053100
PB_novel_43870_0	chr9	-	170	1	Intergenic	novelGene_8244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAGAATCTATATGAA	1064	False	NA	NA	False	NA	NA	NA	99157388	99157218	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_99157200_99157400
PB_novel_43871_0	chr9	-	182	1	Intergenic	novelGene_8245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99165150	99164968	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_99165000_99165200
PB_novel_43881_0	chr9	+	174	1	Intergenic	novelGene_8246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTTA	NA	False	NA	NA	False	NA	NA	NA	99325516	99325690	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_99325500_99325700
PB_novel_43885_0	chr9	+	155	1	Intergenic	novelGene_8247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAAGAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	99441103	99441258	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_99441100_99441300
PB_novel_43888_0	chr9	+	176	1	Intergenic	novelGene_8248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAATGTCCAAAAGT	NA	False	NA	NA	False	NA	NA	NA	99468849	99469025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_99468800_99469000
PB_novel_43890_0	chr9	-	175	1	Intergenic	novelGene_8249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAACTAGTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	99476372	99476197	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_99476200_99476400
PB_novel_43891_0	chr9	-	175	1	Intergenic	novelGene_8250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	9243	False	NA	NA	False	NA	NA	NA	99490255	99490080	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_99490100_99490300
PB_novel_43893_0	chr9	-	175	1	Intergenic	novelGene_8251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	99557663	99557488	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_99557500_99557700
PB_novel_43895_0	chr9	+	176	1	Intergenic	novelGene_8252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	625	False	NA	NA	False	NA	NA	NA	99576427	99576603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_99576400_99576600
PB_novel_43907_0	chr9	+	3779	1	Intergenic	novelGene_8254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGCCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100531112	100534891	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_100531100_100534900
PB_novel_43912_0	chr9	+	173	1	Intergenic	novelGene_8255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATGAAAACCAGTTTA	2962	False	NA	NA	False	NA	NA	NA	100652189	100652362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_100652200_100652400
PB_novel_43917_0	chr9	-	178	1	Intergenic	novelGene_8258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAGAAAGAAATC	NA	False	NA	NA	False	NA	NA	NA	100950763	100950585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_100950600_100950800
PB_novel_43920_0	chr9	+	172	1	Intergenic	novelGene_8256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGTGAAGCAGT	NA	False	NA	NA	False	NA	NA	NA	100829543	100829715	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_100829500_100829700
PB_novel_43925_0	chr9	+	165	1	Intergenic	novelGene_8257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATATTGAAAG	NA	False	NA	NA	False	NA	NA	NA	100930769	100930934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_100930800_100930900
PB_novel_43926_0	chr9	+	160	1	Intergenic	novelGene_8259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	100972157	100972317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_100972200_100972300
PB_novel_43936_0	chr9	+	160	1	Intergenic	novelGene_8260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAATAAAACTTCAAA	NA	False	NA	NA	False	NA	NA	NA	102494018	102494178	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_102494000_102494200
PB_novel_43939_0	chr9	+	177	1	Intergenic	novelGene_8261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAATTTAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	102518386	102518563	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_102518400_102518600
PB_novel_43945_0	chr9	+	177	1	Intergenic	novelGene_8262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAACAACAA	NA	False	NA	NA	False	NA	NA	NA	102677028	102677205	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_102677000_102677200
PB_novel_43950_0	chr9	+	110	1	Intergenic	novelGene_8263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACTTTAAAAAAAAAAAA	5752	False	NA	NA	False	NA	NA	NA	102905958	102906068	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_102906000_102906100
PB_novel_43952_0	chr9	-	177	1	Intergenic	novelGene_8264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	103002458	103002281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_103002300_103002500
PB_novel_43954_0	chr9	+	379	1	Intergenic	novelGene_8265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAAAAATATTT	NA	False	NA	NA	False	NA	NA	NA	103077974	103078353	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_103078000_103078400
PB_novel_43957_0	chr9	-	173	1	Antisense	novelGene_ENSMUSG00000032555.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAGAAAGAAAGAAAGAA	9235	False	NA	NA	False	NA	NA	NA	103212969	103212796	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_103212800_103213000
PB_novel_43959_1	chr9	+	179	1	Intergenic	novelGene_8266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATATTTAACAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	103272052	103272231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_103272100_103272200
PB_novel_43975_0	chr9	-	179	1	Intergenic	novelGene_8267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGCAGGATA	NA	False	NA	NA	False	NA	NA	NA	104190914	104190735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_104190700_104190900
PB_novel_43978_0	chr9	+	171	1	Intergenic	novelGene_8268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAGAAAATAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	104288776	104288947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_104288800_104288900
PB_novel_43983_0	chr9	-	176	1	Intergenic	novelGene_8269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	104980860	104980684	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_104980700_104980900
PB_novel_43988_0	chr9	-	1205	1	NIC	ENSMUSG00000032570.18	novel	939	10	NA	NA	-5	-24827	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAACAAAACA	NA	False	NA	NA	False	AATAAA	-41	NA	105372337	105371132	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr9_-_105371100_105372300
PB_novel_43997_0	chr9	+	176	1	Intergenic	novelGene_8270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106045941	106046117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_106045900_106046100
PB_novel_43998_0	chr9	-	179	1	Intergenic	novelGene_8271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAACAAAAAACTATA	NA	False	NA	NA	False	NA	NA	NA	106046395	106046216	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_106046200_106046400
PB_novel_44002_0	chr9	+	171	1	Intergenic	novelGene_8272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	106070954	106071125	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_106071000_106071100
PB_novel_44003_0	chr9	-	184	1	Intergenic	novelGene_8273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAATAAATAAATAAAT	1820	False	NA	NA	False	NA	NA	NA	106078497	106078313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_106078300_106078500
PB_novel_44005_0	chr9	-	176	1	Intergenic	novelGene_8274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAGAAAAAAGA	1758	False	NA	NA	False	NA	NA	NA	106095059	106094883	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_106094900_106095100
PB_novel_44007_0	chr9	-	181	1	Intergenic	novelGene_8275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	5682	False	NA	NA	False	NA	NA	NA	106121409	106121228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_106121200_106121400
PB_novel_44008_0	chr9	+	167	1	Intergenic	novelGene_8276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GATTTATAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106122852	106123019	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_106122900_106123000
PB_novel_44009_0	chr9	-	179	1	Intergenic	novelGene_8277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGGAAGAAAGAAAGA	6793	False	NA	NA	False	NA	NA	NA	106129606	106129427	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_106129400_106129600
PB_novel_44013_0	chr9	+	165	2	Intergenic	novelGene_8278	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106305608	106306013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_106305637_106305876
PB_novel_44019_0	chr9	+	174	1	Intergenic	novelGene_8279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCACAGGC	NA	False	NA	NA	False	NA	NA	NA	106343740	106343914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_106343700_106343900
PB_novel_44026_0	chr9	-	178	1	Intergenic	novelGene_8280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	106612244	106612066	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_106612100_106612200
PB_novel_44028_0	chr9	+	177	1	Intergenic	novelGene_8281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGGTATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106671947	106672124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_106671900_106672100
PB_novel_44031_0	chr9	-	161	1	Intergenic	novelGene_8282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATATTAAAAC	NA	False	NA	NA	False	NA	NA	NA	106708355	106708194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_106708200_106708400
PB_novel_44037_1	chr9	-	162	1	Intergenic	novelGene_8284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAGTAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	106897753	106897591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_106897600_106897800
PB_novel_44038_0	chr9	-	177	1	Intergenic	novelGene_8283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106855268	106855091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_106855100_106855300
PB_novel_44041_0	chr9	+	181	1	Intergenic	novelGene_8285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAATTA	NA	False	NA	NA	False	NA	NA	NA	107075380	107075561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_107075400_107075600
PB_novel_44059_0	chr9	+	159	1	Intergenic	novelGene_8286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTTGAAAAAAA	1673	False	NA	NA	False	NA	NA	NA	107589550	107589709	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_107589600_107589700
PB_novel_44062_0	chr9	+	2035	1	Antisense	novelGene_ENSMUSG00000032580.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	682	False	NA	NA	False	NA	NA	NA	107635816	107637851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_107635800_107637900
PB_novel_44064_0	chr9	+	160	1	Intergenic	novelGene_8287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAACAAAACAAAACAA	4547	False	NA	NA	False	NA	NA	NA	107660486	107660646	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_107660500_107660600
PB_novel_44074_0	chr9	-	179	1	Intergenic	novelGene_8288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTCACATGTCTA	5954	False	NA	NA	False	NA	NA	NA	107866880	107866701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_107866700_107866900
PB_novel_44075_0	chr9	+	180	1	Intergenic	novelGene_8289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACAAGAAATATA	2434	False	NA	NA	False	NA	NA	NA	107890607	107890787	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_107890600_107890800
PB_novel_44076_1	chr9	-	158	1	Intergenic	novelGene_8290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAATAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107903383	107903225	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_107903200_107903400
PB_novel_44077_0	chr9	-	3842	2	Antisense	novelGene_ENSMUSG00000032594.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGCCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107904237	107900200	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_107903196_107903390
PB_novel_44079_0	chr9	+	160	1	Intergenic	novelGene_8291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	6411	False	NA	NA	False	NA	NA	NA	107921402	107921562	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_107921400_107921600
PB_novel_44082_0	chr9	+	174	1	Intergenic	novelGene_8292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	7433	False	NA	NA	False	NA	NA	NA	108010080	108010254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_108010100_108010300
PB_novel_44085_0	chr9	-	131	1	Intergenic	novelGene_8293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAACAAAAA	3025	False	NA	NA	False	NA	NA	NA	108080325	108080194	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_108080200_108080300
PB_novel_44089_0	chr9	+	177	1	Intergenic	novelGene_8294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108129596	108129773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_108129600_108129800
PB_novel_44090_5	chr9	+	178	1	Intergenic	novelGene_8295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108133064	108133242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_108133100_108133200
PB_novel_44097_0	chr9	+	176	1	Intergenic	novelGene_8296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAATCCAACATT	NA	False	NA	NA	False	NA	NA	NA	108144353	108144529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_108144400_108144500
PB_novel_44107_2	chr9	-	846	2	Antisense	novelGene_ENSMUSG00000007815.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATCAGGCA	5118	False	NA	NA	False	NA	NA	NA	108204402	108203375	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_108203726_108203906
PB_novel_44114_0	chr9	+	170	1	Intergenic	novelGene_8297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAGAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	108213560	108213730	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_108213600_108213700
PB_novel_44115_0	chr9	+	172	1	Intergenic	novelGene_8298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAAAAAAAAAAACTATT	NA	False	NA	NA	False	NA	NA	NA	108222145	108222317	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_108222100_108222300
PB_novel_44121_0	chr9	+	174	1	Intergenic	novelGene_8299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAATTTAAGGATAA	4693	False	NA	NA	False	NA	NA	NA	108332373	108332547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_108332400_108332500
PB_novel_44125_0	chr9	-	180	1	Intergenic	novelGene_8300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAATAGGATTTGAA	4587	False	NA	NA	False	NA	NA	NA	108354508	108354328	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_108354300_108354500
PB_novel_44127_0	chr9	-	177	1	Intergenic	novelGene_8301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	108402406	108402229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_108402200_108402400
PB_novel_44134_0	chr9	-	96	2	Antisense	novelGene_ENSMUSG00000103970.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTAAAAAAAAAAAAACTA	6999	False	NA	NA	False	NA	NA	NA	108424828	108420413	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_108420456_108424774
PB_novel_44144_0	chr9	+	169	1	Intergenic	novelGene_8302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTTAAAAAAAAAAAAA	2867	False	NA	NA	False	NA	NA	NA	108537086	108537255	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_108537100_108537300
PB_novel_44146_0	chr9	-	173	1	Intergenic	novelGene_8303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	108552393	108552220	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_108552200_108552400
PB_novel_44155_0	chr9	-	177	1	Intergenic	novelGene_8304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAATGTAAA	9541	False	NA	NA	False	NA	NA	NA	108640124	108639947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_108639900_108640100
PB_novel_44160_0	chr9	-	175	1	Intergenic	novelGene_8305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAATAAATAAATAAATAT	NA	False	NA	NA	False	NA	NA	NA	108761363	108761188	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_108761200_108761400
PB_novel_44162_0	chr9	+	311	1	Intergenic	novelGene_8306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAGAAAGAAAA	1438	False	NA	NA	False	NA	NA	NA	108833290	108833601	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_108833300_108833600
PB_novel_44169_0	chr9	+	172	1	Intergenic	novelGene_8307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATCTCAGGGTA	NA	False	NA	NA	False	NA	NA	NA	109473251	109473423	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_109473300_109473400
PB_novel_44171_0	chr9	+	176	1	Intergenic	novelGene_8308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAGAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	109663771	109663947	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_109663800_109663900
PB_novel_44173_0	chr9	+	165	1	Intergenic	novelGene_8310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109681978	109682143	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_109682000_109682100
PB_novel_44174_0	chr9	+	181	1	Intergenic	novelGene_8309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAATTAAGGAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	109681517	109681698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_109681500_109681700
PB_novel_44175_0	chr9	+	177	1	Intergenic	novelGene_8311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGACAGAAT	NA	False	NA	NA	False	NA	NA	NA	109684560	109684737	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_109684600_109684700
PB_novel_44177_0	chr9	-	285	1	Intergenic	novelGene_8312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	109698108	109697823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_109697800_109698100
PB_novel_44178_0	chr9	+	147	1	Intergenic	novelGene_8313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	109707542	109707689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_109707500_109707700
PB_novel_44181_0	chr9	-	175	1	Intergenic	novelGene_8314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATTTTTTTTAATTAAT	NA	False	NA	NA	False	NA	NA	NA	109758345	109758170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_109758200_109758300
PB_novel_44182_0	chr9	-	147	1	Intergenic	novelGene_8315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAACAAGAAAAAACTG	NA	False	NA	NA	False	NA	NA	NA	109760350	109760203	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_109760200_109760400
PB_novel_44187_0	chr9	+	175	1	Intergenic	novelGene_8316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAGAAATAGGA	NA	False	NA	NA	False	NA	NA	NA	109808418	109808593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_109808400_109808600
PB_novel_44189_0	chr9	-	176	1	Intergenic	novelGene_8317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8629	False	NA	NA	False	NA	NA	NA	109840818	109840642	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_109840600_109840800
PB_novel_44192_1	chr9	+	173	1	Intergenic	novelGene_8318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	360	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9063	False	NA	NA	False	NA	NA	NA	109905502	109905675	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_109905500_109905700
PB_novel_44195_0	chr9	+	156	1	FSM	ENSMUSG00000105962.2	ENSMUST00000197902.2	1617	1	516	945	516	-945	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATCAAAAAAA	9112	False	NA	NA	False	NA	NA	NA	109870763	109870919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr9_+_109870800_109870900
PB_novel_44198_0	chr9	-	1882	1	Antisense	novelGene_ENSMUSG00000032479.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109909978	109908096	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_109908100_109910000
PB_novel_44202_0	chr9	+	172	1	Intergenic	novelGene_8319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAACT	NA	False	NA	NA	False	NA	NA	NA	109926309	109926481	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_109926300_109926500
PB_novel_44206_0	chr9	+	172	1	Antisense	novelGene_ENSMUSG00000032480.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	2230	False	NA	NA	False	NA	NA	NA	109939460	109939632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_109939500_109939600
PB_novel_44211_0	chr9	-	165	1	Intergenic	novelGene_8320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAACCCAAATCC	NA	False	NA	NA	False	NA	NA	NA	109955712	109955547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_109955500_109955700
PB_novel_44212_0	chr9	-	176	1	Intergenic	novelGene_8321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	109956449	109956273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_109956300_109956400
PB_novel_44216_0	chr9	-	177	1	Intergenic	novelGene_8322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109983354	109983177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_109983200_109983400
PB_novel_44227_0	chr9	-	115	1	Intergenic	novelGene_8323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	110009489	110009374	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_110009400_110009500
PB_novel_44228_1	chr9	-	173	2	Antisense	novelGene_ENSMUSG00000098973.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	82	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	1996	False	NA	NA	False	NA	NA	NA	110130385	110009366	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_110009415_110130260
PB_novel_44236_0	chr9	-	166	1	Intergenic	novelGene_8324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATAAATCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	110117747	110117581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_110117600_110117700
PB_novel_44239_0	chr9	-	187	1	Intergenic	novelGene_8325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAACCAAGTTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	110137781	110137594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_110137600_110137800
PB_novel_44240_0	chr9	-	137	2	Intergenic	novelGene_8326	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAATTAAAAAC	NA	False	NA	NA	False	NA	NA	NA	110165834	110137606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_110137712_110165802
PB_novel_44243_0	chr9	-	176	1	Intergenic	novelGene_8327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	110188307	110188131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_110188100_110188300
PB_novel_44247_0	chr9	-	177	1	Intergenic	novelGene_8328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110243812	110243635	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_110243600_110243800
PB_novel_44249_0	chr9	+	168	1	Intergenic	novelGene_8329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	110292251	110292419	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_110292300_110292400
PB_novel_44251_0	chr9	+	177	1	Intergenic	novelGene_8330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACATATC	NA	False	NA	NA	False	NA	NA	NA	110301452	110301629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_110301500_110301600
PB_novel_44253_0	chr9	+	173	1	Intergenic	novelGene_8331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAATACACATATCT	3432	False	NA	NA	False	NA	NA	NA	110384377	110384550	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_110384400_110384600
PB_novel_44263_0	chr9	-	179	1	Intergenic	novelGene_8332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4519	False	NA	NA	False	NA	NA	NA	110528432	110528253	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_110528300_110528400
PB_novel_44267_0	chr9	+	174	1	Intergenic	novelGene_8333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110566987	110567161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_110567000_110567200
PB_novel_44270_0	chr9	-	167	1	Intergenic	novelGene_8334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110625781	110625614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_110625600_110625800
PB_novel_44282_0	chr9	-	158	1	Intergenic	novelGene_8335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAAACTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	110777654	110777496	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_110777500_110777700
PB_novel_44285_0	chr9	+	156	1	Intergenic	novelGene_8336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	369	False	NA	NA	False	NA	NA	NA	110797622	110797778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_110797600_110797800
PB_novel_44287_0	chr9	-	172	1	Intergenic	novelGene_8337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAAAAAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	110817841	110817669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_110817700_110817800
PB_novel_44289_0	chr9	+	183	1	Intergenic	novelGene_8338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAGGAGAGGAAAAAAAGAA	471	False	NA	NA	False	NA	NA	NA	110844997	110845180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_110845000_110845200
PB_novel_44296_0	chr9	-	3073	1	Intergenic	novelGene_8339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGGAAAGAAAGC	NA	False	NA	NA	False	NA	NA	NA	111352320	111349247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_111349200_111352300
PB_novel_44319_0	chr9	-	173	1	Intergenic	novelGene_8340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAATTAAG	NA	False	NA	NA	False	NA	NA	NA	113829895	113829722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_113829700_113829900
PB_novel_44326_2	chr9	+	171	1	Intergenic	novelGene_8341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114190493	114190664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_114190500_114190700
PB_novel_44339_0	chr9	-	3293	1	Antisense	novelGene_ENSMUSG00000045594.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-7	NA	114274300	114271007	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_114271000_114274300
PB_novel_44343_0	chr9	-	4499	1	Antisense	novelGene_ENSMUSG00000045594.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114293963	114289464	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_114289500_114294000
PB_novel_44344_0	chr9	-	175	1	Intergenic	novelGene_8342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	114314873	114314698	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_114314700_114314900
PB_novel_44347_0	chr9	-	177	1	Intergenic	novelGene_8343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCCCGAT	NA	False	NA	NA	False	NA	NA	NA	114331720	114331543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_114331500_114331700
PB_novel_44348_0	chr9	+	176	1	Intergenic	novelGene_8344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAATAAAAATAA	2836	False	NA	NA	False	NA	NA	NA	114332893	114333069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_114332900_114333100
PB_novel_44349_0	chr9	+	1054	1	Antisense	novelGene_ENSMUSG00000079259.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114340455	114341509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_114340500_114341500
PB_novel_44354_0	chr9	-	2629	1	Intergenic	novelGene_8345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	880	False	NA	NA	False	NA	NA	NA	114389780	114387151	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_114387200_114389800
PB_novel_44360_0	chr9	-	2136	1	Genic_Genomic	ENSMUSG00000056167.9	novel	NA	NA	NA	NA	52420	470	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAGAAAAA	1009	False	NA	NA	False	NA	NA	NA	114416611	114414475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr9_-_114414500_114416600
PB_novel_44366_0	chr9	+	176	1	Intergenic	novelGene_8346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAACAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	114475051	114475227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_114475100_114475200
PB_novel_44370_0	chr9	+	168	1	Intergenic	novelGene_8347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGCCG	NA	False	NA	NA	False	NA	NA	NA	114503176	114503344	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_114503200_114503300
PB_novel_44380_0	chr9	-	170	1	Intergenic	novelGene_8348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	114573948	114573778	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_114573800_114573900
PB_novel_44382_0	chr9	-	168	1	Intergenic	novelGene_8349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAGAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	114699292	114699124	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_114699100_114699300
PB_novel_44384_0	chr9	-	175	1	Intergenic	novelGene_8350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114804357	114804182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_114804200_114804400
PB_novel_44385_0	chr9	-	175	1	Intergenic	novelGene_8351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	176	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	114804563	114804388	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_114804400_114804600
PB_novel_44386_0	chr9	-	188	1	Intergenic	novelGene_8352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAGCACTCATACACATA	7745	False	NA	NA	False	NA	NA	NA	114811336	114811148	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_114811100_114811300
PB_novel_44387_0	chr9	+	171	1	Intergenic	novelGene_8353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	114825350	114825521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_114825400_114825500
PB_novel_44394_0	chr9	-	180	1	Intergenic	novelGene_8354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	115106594	115106414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_115106400_115106600
PB_novel_44404_0	chr9	+	173	1	Intergenic	novelGene_8355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAAAAAGGAAT	NA	False	NA	NA	False	NA	NA	NA	117287896	117288069	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_117287900_117288100
PB_novel_44410_0	chr9	+	183	1	Intergenic	novelGene_8356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGGATGTGGAA	NA	False	NA	NA	False	NA	NA	NA	118196222	118196405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_118196200_118196400
PB_novel_44411_0	chr9	-	177	1	Intergenic	novelGene_8357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	118197284	118197107	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_118197100_118197300
PB_novel_44430_0	chr9	+	190	1	Intergenic	novelGene_8358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGTGAGAAAAAATCAATTT	NA	False	NA	NA	False	NA	NA	NA	119004331	119004521	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_119004300_119004500
PB_novel_44434_1	chr9	+	176	1	Intergenic	novelGene_8359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTCATT	1263	False	NA	NA	False	NA	NA	NA	119103759	119103935	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_119103800_119103900
PB_novel_44437_0	chr9	-	168	1	Intergenic	novelGene_8360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAACAAAACA	9783	False	NA	NA	False	NA	NA	NA	119147282	119147114	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_119147100_119147300
PB_novel_44438_0	chr9	+	176	1	Intergenic	novelGene_8361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATAAGGAAGG	NA	False	NA	NA	False	NA	NA	NA	119152615	119152791	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_119152600_119152800
PB_novel_44439_0	chr9	+	330	1	Intergenic	novelGene_8362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAACA	NA	False	NA	NA	False	NA	NA	NA	119154685	119155015	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_119154700_119155000
PB_novel_44440_0	chr9	-	1833	1	Intergenic	novelGene_8363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATATTAAAAAAAAAAAAA	7563	False	NA	NA	False	NA	NA	NA	119182854	119181021	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_119181000_119182900
PB_novel_44441_0	chr9	-	222	1	Intergenic	novelGene_8364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTCACTGAT	NA	False	NA	NA	False	NA	NA	NA	119219272	119219050	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_119219000_119219300
PB_novel_44443_0	chr9	+	5512	1	Antisense	novelGene_ENSMUSG00000097504.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAATAATAATAAATA	NA	False	NA	-17	True	NA	NA	NA	119265665	119271177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_119265700_119271200
PB_novel_44444_0	chr9	-	2085	1	Antisense	novelGene_ENSMUSG00000061393.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119265906	119263821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_119263800_119265900
PB_novel_44445_0	chr9	+	4706	1	Antisense	novelGene_ENSMUSG00000097504.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAATAAATAATAATAAAT	NA	False	NA	-18	True	NA	NA	NA	119266470	119271176	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_119266500_119271200
PB_novel_44447_0	chr9	-	2075	1	Intergenic	novelGene_8365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119297276	119295201	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_119295200_119297300
PB_novel_44451_0	chr9	-	189	1	Intergenic	novelGene_8366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAACAAAAAAATCTG	NA	False	NA	NA	False	NA	NA	NA	119832912	119832723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_119832700_119832900
PB_novel_44452_0	chr9	-	176	1	Intergenic	novelGene_8367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	119835808	119835632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_119835600_119835800
PB_novel_44456_0	chr9	+	178	1	Intergenic	novelGene_8368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119924383	119924561	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_119924400_119924600
PB_novel_44461_0	chr9	-	176	1	Intergenic	novelGene_8369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	120289009	120288833	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_120288800_120289000
PB_novel_44463_0	chr9	+	163	1	Intergenic	novelGene_8370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGTAAAAAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	120346292	120346455	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_120346300_120346500
PB_novel_44466_0	chr9	+	189	1	Intergenic	novelGene_8371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAACTATTAAAAACAA	3331	False	NA	3	True	AATAAA	-6	NA	120388184	120388373	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_120388200_120388400
PB_novel_44470_0	chr9	-	176	1	Intergenic	novelGene_8372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120451258	120451082	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_120451100_120451300
PB_novel_44480_0	chr9	-	174	1	Intergenic	novelGene_8373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAAAAGTACCTTT	2653	False	NA	NA	False	NA	NA	NA	120740544	120740370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_120740400_120740500
PB_novel_44484_0	chr9	+	178	1	Intergenic	novelGene_8374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGTTAACATGG	NA	False	NA	NA	False	NA	NA	NA	121041125	121041303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_121041100_121041300
PB_novel_44491_2	chr9	-	163	1	Antisense	novelGene_ENSMUSG00000110751.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAATAAAATTATTAAAT	NA	False	NA	NA	False	NA	NA	NA	121148458	121148295	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_121148300_121148500
PB_novel_44493_0	chr9	+	177	1	Intergenic	novelGene_8375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	423	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121198164	121198341	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_121198200_121198300
PB_novel_44497_0	chr9	-	177	1	Intergenic	novelGene_8376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121292847	121292670	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_121292700_121292800
PB_novel_44498_0	chr9	-	160	1	Intergenic	novelGene_8377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATTAAAAAAA	5429	False	NA	NA	False	NA	NA	NA	121309377	121309217	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_121309200_121309400
PB_novel_44504_0	chr9	-	158	1	Intergenic	novelGene_8378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121721193	121721035	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_121721000_121721200
PB_novel_44505_0	chr9	-	159	1	Intergenic	novelGene_8379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATATTTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	121721943	121721784	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_121721800_121721900
PB_novel_44506_0	chr9	-	148	1	Intergenic	novelGene_8380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAATAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122065188	122065040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_122065000_122065200
PB_novel_44508_0	chr9	-	162	1	Intergenic	novelGene_8381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122175937	122175775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_122175800_122175900
PB_novel_44510_0	chr9	+	189	1	Intergenic	novelGene_8382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATACTGTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122387506	122387695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_122387500_122387700
PB_novel_44514_0	chr9	+	169	1	Intergenic	novelGene_8383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	162	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAGAACAAACA	NA	False	NA	NA	False	NA	NA	NA	122597554	122597723	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_122597600_122597700
PB_novel_44515_0	chr9	-	175	1	Intergenic	novelGene_8384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAAAACAATAAT	NA	False	NA	NA	False	NA	NA	NA	122601924	122601749	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_122601700_122601900
PB_novel_44516_0	chr9	-	173	1	Intergenic	novelGene_8385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	122608721	122608548	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_122608500_122608700
PB_novel_44519_0	chr9	-	7045	1	Antisense	novelGene_ENSMUSG00000036768.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	122790944	122783899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_-_122783900_122790900
PB_novel_44522_0	chr9	+	167	1	Intergenic	novelGene_8386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CATAAATCTAAAAAAAAAAA	931	False	NA	NA	False	NA	NA	NA	122876448	122876615	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_122876400_122876600
PB_novel_44532_1	chr9	+	165	1	Intergenic	novelGene_8387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATCTTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123343273	123343438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_123343300_123343400
PB_novel_44532_2	chr9	+	178	2	Antisense	novelGene_ENSMUSG00000111340.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	123343272	123491254	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr9_+_123343421_123491224
PB_novel_44537_0	chr9	-	153	1	Intergenic	novelGene_8388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACACAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	123416028	123415875	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_123415900_123416000
PB_novel_44539_0	chr9	+	155	1	Intergenic	novelGene_8389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAATAAATAAATCT	NA	False	NA	NA	False	NA	NA	NA	123662750	123662905	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_123662800_123662900
PB_novel_44554_0	chrM	+	569	1	Antisense	novelGene_ENSMUSG00000064369.1_AS_novelGene_ENSMUSG00000064368.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTAATGACAAACATACGA	84	False	NA	82	True	NA	NA	NA	13570	14139	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrM_+_13600_14100
PB_novel_44557_0	chrM	-	263	1	Intergenic	novelGene_1824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	222	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAAGATACCAAATGCA	1	True	NA	18	True	NA	NA	NA	16187	15924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrM_-_15900_16200
PB_novel_44560_0	chrUn_GL456367v1	+	177	1	Intergenic	novelGene_9450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	12382	12559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_GL456367v1_+_12400_12600
PB_novel_44561_0	chrUn_GL456368v1	+	2014	1	Intergenic	novelGene_9451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6242	8256	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_GL456368v1_+_6200_8300
PB_novel_44564_0	chrUn_GL456378v1	+	177	1	Intergenic	novelGene_9452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	17174	17351	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_GL456378v1_+_17200_17400
PB_novel_44566_0	chrUn_GL456382v1	-	541	1	Intergenic	novelGene_9453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TACTTAGAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	14748	14207	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_GL456382v1_-_14200_14700
PB_novel_44571_0	chrUn_JH584304v1	-	134	1	Intergenic	novelGene_9454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10648	10514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_JH584304v1_-_10500_10600
PB_novel_44579_6	chrUn_JH584304v1	-	3072	6	Intergenic	novelGene_9455	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_4	134.863783129497	303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATTAAAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	59704	52695	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591
PB_novel_44582_0	chrUn_MU069435v1	-	321	1	Intergenic	novelGene_9456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAATTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-33	NA	1659	1338	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_-_1300_1700
PB_novel_44586_6	chrUn_MU069435v1	-	177	1	Intergenic	novelGene_9459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	6762	6585	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_-_6600_6800
PB_novel_44587_0	chrUn_MU069435v1	-	209	1	Intergenic	novelGene_9457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATACATACATACATACAT	NA	False	NA	NA	False	NA	NA	NA	4670	4461	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_-_4500_4700
PB_novel_44588_0	chrUn_MU069435v1	+	172	1	Intergenic	novelGene_9458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	5855	6027	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_+_5900_6000
PB_novel_44590_0	chrUn_MU069435v1	-	135	1	Intergenic	novelGene_9460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8296	8161	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_-_8200_8300
PB_novel_44596_0	chrUn_MU069435v1	+	158	1	Intergenic	novelGene_9461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	11770	11928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_+_11800_11900
PB_novel_44599_0	chrUn_MU069435v1	-	904	1	Intergenic	novelGene_9462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	15569	14665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_-_14700_15600
PB_novel_44606_0	chrUn_MU069435v1	-	2151	1	Intergenic	novelGene_9463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGTCTCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24757	22606	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_-_22600_24800
PB_novel_44607_1	chrUn_MU069435v1	-	803	1	Intergenic	novelGene_9464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGAAAGAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	26343	25540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_-_25500_26300
PB_novel_44608_0	chrUn_MU069435v1	-	560	1	Intergenic	novelGene_9465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACCAAAACAAACGAAC	NA	False	NA	NA	False	NA	NA	NA	27229	26669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_-_26700_27200
PB_novel_44609_0	chrUn_MU069435v1	-	348	1	Intergenic	novelGene_9466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAAGAATAAATGTAAGA	NA	False	NA	NA	False	NA	NA	NA	28001	27653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_-_27700_28000
PB_novel_44611_0	chrUn_MU069435v1	-	970	1	Intergenic	novelGene_9467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATTTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30762	29792	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrUn_MU069435v1_-_29800_30800
PB_novel_44626_0	chrX	-	175	1	Intergenic	novelGene_5549	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGATTAAGGGA	3683	False	NA	NA	False	NA	NA	NA	7315628	7315453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_7315500_7315600
PB_novel_44635_0	chrX	+	178	1	Intergenic	novelGene_5550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACAGCAACAACA	70	False	NA	NA	False	NA	NA	NA	7577578	7577756	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_7577600_7577800
PB_novel_44636_0	chrX	+	179	1	Intergenic	novelGene_5551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACAAAGAG	1869	False	NA	NA	False	NA	NA	NA	7582373	7582552	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_7582400_7582600
PB_novel_44642_0	chrX	-	157	1	Intergenic	novelGene_5552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	7623769	7623612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_7623600_7623800
PB_novel_44645_0	chrX	-	178	1	Intergenic	novelGene_5553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	7625384	7625206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_7625200_7625400
PB_novel_44662_0	chrX	-	175	1	Intergenic	novelGene_5554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAGAAGCATGGGAA	NA	False	NA	NA	False	NA	NA	NA	7878259	7878084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_7878100_7878300
PB_novel_44668_0	chrX	-	1626	1	Intergenic	novelGene_5555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	8741	False	NA	NA	False	NA	NA	NA	7919775	7918149	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_7918100_7919800
PB_novel_44676_0	chrX	+	178	1	Intergenic	novelGene_5556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAGAAAAAGAAACG	3922	False	NA	NA	False	NA	NA	NA	7970275	7970453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_7970300_7970500
PB_novel_44680_1	chrX	+	174	1	Intergenic	novelGene_5557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAGTACTG	NA	False	NA	NA	False	NA	NA	NA	8018500	8018674	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_8018500_8018700
PB_novel_44683_0	chrX	-	172	1	Intergenic	novelGene_5558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	8046983	8046811	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_8046800_8047000
PB_novel_44692_0	chrX	-	176	1	Intergenic	novelGene_5559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	391	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8104838	8104662	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_8104700_8104800
PB_novel_44697_0	chrX	-	175	1	Intergenic	novelGene_5560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	8153464	8153289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_8153300_8153500
PB_novel_44719_0	chrX	+	170	1	Intergenic	novelGene_5561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10568847	10569017	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_10568800_10569000
PB_novel_44724_0	chrX	-	138	1	Intergenic	novelGene_5562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAGCAAAAAA	2674	False	NA	NA	False	NA	NA	NA	12125725	12125587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_12125600_12125700
PB_novel_44726_0	chrX	+	176	1	Intergenic	novelGene_5563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAACA	NA	False	NA	NA	False	NA	NA	NA	12187275	12187451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_12187300_12187500
PB_novel_44735_0	chrX	+	164	1	Intergenic	novelGene_5564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAGAAGTTC	NA	False	NA	NA	False	NA	NA	NA	12406485	12406649	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_12406500_12406600
PB_novel_44746_0	chrX	+	175	1	Intergenic	novelGene_5565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	12513533	12513708	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_12513500_12513700
PB_novel_44751_2	chrX	+	176	1	Intergenic	novelGene_5570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	12729697	12729873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_12729700_12729900
PB_novel_44755_0	chrX	+	227	1	Intergenic	novelGene_5566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12630623	12630850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_12630600_12630800
PB_novel_44758_1	chrX	-	177	1	Intergenic	novelGene_5573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	231	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	12749669	12749492	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_12749500_12749700
PB_novel_44758_5	chrX	-	177	2	Intergenic	novelGene_5568	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	12749668	12696926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_12696966_12749530
PB_novel_44759_0	chrX	+	163	1	Intergenic	novelGene_5567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTCAAAAAAACAAGAAACC	923	False	NA	NA	False	NA	NA	NA	12674205	12674368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_12674200_12674400
PB_novel_44761_0	chrX	+	157	1	Intergenic	novelGene_5569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	12715049	12715206	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_12715000_12715200
PB_novel_44764_0	chrX	-	191	1	Intergenic	novelGene_5571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	12738902	12738711	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_12738700_12738900
PB_novel_44765_0	chrX	+	157	1	Intergenic	novelGene_5572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAATAAATCTTAAA	NA	False	NA	NA	False	NA	NA	NA	12747675	12747832	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_12747700_12747800
PB_novel_44772_0	chrX	-	167	1	Intergenic	novelGene_5574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGTAAGTAAGTAA	NA	False	NA	NA	False	NA	NA	NA	12797446	12797279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_12797300_12797400
PB_novel_44773_1	chrX	-	176	1	Antisense	novelGene_ENSMUSG00000031010.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAAAATTTTAACT	NA	False	NA	NA	False	NA	NA	NA	12995732	12995556	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_-_12995600_12995700
PB_novel_44774_0	chrX	+	176	1	Intergenic	novelGene_5575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATACACTGAAGAT	NA	False	NA	NA	False	NA	NA	NA	12853562	12853738	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_12853600_12853700
PB_novel_44776_0	chrX	+	177	1	Intergenic	novelGene_5576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAGAAAACC	NA	False	NA	NA	False	NA	NA	NA	12871696	12871873	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_12871700_12871900
PB_novel_44782_0	chrX	+	5007	1	NIC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	6131	1372	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	8179	False	NA	NA	False	NA	NA	NA	12986053	12991060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_12986100_12991100
PB_novel_44792_0	chrX	+	166	1	Intergenic	novelGene_5577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAAGTACACATAC	NA	False	NA	NA	False	NA	NA	NA	13052150	13052316	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_13052200_13052300
PB_novel_44797_0	chrX	+	168	1	Intergenic	novelGene_5578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	3076	False	NA	NA	False	NA	NA	NA	13075892	13076060	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_13075900_13076100
PB_novel_44798_0	chrX	+	172	1	Intergenic	novelGene_5579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAGAAAAGAAAAGAAA	9990	False	NA	NA	False	NA	NA	NA	13082806	13082978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_13082800_13083000
PB_novel_44800_0	chrX	-	175	1	Intergenic	novelGene_5580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGTTCC	NA	False	NA	NA	False	NA	NA	NA	13094438	13094263	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_13094300_13094400
PB_novel_44801_0	chrX	-	177	1	Intergenic	novelGene_5582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	13118479	13118302	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_13118300_13118500
PB_novel_44802_0	chrX	-	176	1	Intergenic	novelGene_5581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	13098688	13098512	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_13098500_13098700
PB_novel_44816_0	chrX	+	169	1	Intergenic	novelGene_5583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	14429449	14429618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_14429400_14429600
PB_novel_44829_0	chrX	+	161	1	Intergenic	novelGene_5584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAATAAATAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17633640	17633801	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_17633600_17633800
PB_novel_44836_0	chrX	-	173	1	Intergenic	novelGene_5585	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	18914350	18914177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_18914200_18914400
PB_novel_44838_0	chrX	+	174	1	Intergenic	novelGene_5586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAAGAAAGGGCAA	NA	False	NA	NA	False	NA	NA	NA	19082983	19083157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_19083000_19083200
PB_novel_44843_0	chrX	-	172	1	Intergenic	novelGene_5587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAATGAGAATA	NA	False	NA	NA	False	NA	NA	NA	19569477	19569305	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_19569300_19569500
PB_novel_44846_0	chrX	+	174	1	Intergenic	novelGene_5588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	20071139	20071313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_20071100_20071300
PB_novel_44848_0	chrX	+	177	1	Intergenic	novelGene_5589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20190003	20190180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_20190000_20190200
PB_novel_44849_0	chrX	-	173	1	Intergenic	novelGene_5590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGGAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	20206775	20206602	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_20206600_20206800
PB_novel_44866_0	chrX	+	3465	1	NIC	ENSMUSG00000031060.17	novel	3698	24	NA	NA	2	-27945	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	559	False	NA	NA	False	NA	NA	NA	20484025	20487490	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_20484000_20487500
PB_novel_44882_0	chrX	-	173	1	Intergenic	novelGene_5591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGGGAAAAAAAGAATAATC	NA	False	NA	NA	False	NA	NA	NA	20679625	20679452	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_20679500_20679600
PB_novel_44893_0	chrX	-	1708	1	Genic_Genomic	ENSMUSG00000009406.14	novel	NA	NA	NA	NA	17048	1542	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20799799	20798091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_20798100_20799800
PB_novel_44902_0	chrX	+	181	1	Intergenic	novelGene_5592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	393	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21338592	21338773	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_21338600_21338800
PB_novel_44904_0	chrX	-	194	1	Intergenic	novelGene_5593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAATGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21495641	21495447	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_21495400_21495600
PB_novel_44910_0	chrX	-	169	1	Intergenic	novelGene_5594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAAAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	22537879	22537710	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_22537700_22537900
PB_novel_44914_0	chrX	-	175	1	Intergenic	novelGene_5595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	23493365	23493190	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_23493200_23493400
PB_novel_44922_1	chrX	+	3026	1	FSM	ENSMUSG00000079297.5	ENSMUST00000112099.2	1350	1	467	-2143	467	2143	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAACAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	32943590	32946616	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_+_32943600_32946600
PB_novel_44929_0	chrX	-	185	1	Intergenic	novelGene_5596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAGAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	35149179	35148994	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_35149000_35149200
PB_novel_44931_0	chrX	-	172	1	Intergenic	novelGene_5597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATATTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35171151	35170979	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_35171000_35171200
PB_novel_44932_0	chrX	-	180	1	Intergenic	novelGene_5598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGATTTAAAATA	NA	False	NA	NA	False	NA	NA	NA	35469650	35469470	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_35469500_35469600
PB_novel_44938_0	chrX	-	175	1	Intergenic	novelGene_5599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35860321	35860146	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_35860100_35860300
PB_novel_44940_0	chrX	+	181	1	Intergenic	novelGene_5600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTATTTAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	35943640	35943821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_35943600_35943800
PB_novel_44947_0	chrX	+	161	1	Intergenic	novelGene_5601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAATAAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	36041082	36041243	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_36041100_36041200
PB_novel_44952_0	chrX	+	156	1	Intergenic	novelGene_5602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGTAAAAATAAATAAATCT	NA	False	NA	NA	False	NA	NA	NA	36086589	36086745	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_36086600_36086700
PB_novel_44956_0	chrX	+	177	1	Intergenic	novelGene_5603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAGAGAGAGAC	2145	False	NA	NA	False	NA	NA	NA	36330575	36330752	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_36330600_36330800
PB_novel_44962_0	chrX	-	141	2	Antisense	novelGene_ENSMUSG00000016409.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATAAAGTTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	36396163	36364816	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_-_36364913_36396118
PB_novel_44963_0	chrX	-	169	1	Intergenic	novelGene_5604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAAAAATAAAGTTGTG	NA	False	NA	NA	False	NA	NA	NA	36364988	36364819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_36364800_36365000
PB_novel_44966_0	chrX	-	175	1	Intergenic	novelGene_5605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGTTACTACGAA	NA	False	NA	NA	False	NA	NA	NA	36393097	36392922	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_36392900_36393100
PB_novel_44988_0	chrX	-	173	1	Intergenic	novelGene_5606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAAGTGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37636607	37636434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_37636400_37636600
PB_novel_44989_0	chrX	-	177	1	Intergenic	novelGene_5607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATTAAAAAAAAAAA	4957	False	NA	NA	False	NA	NA	NA	37656737	37656560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_37656600_37656700
PB_novel_44990_0	chrX	+	173	1	Intergenic	novelGene_5608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAATAAAGCTAGAA	NA	False	NA	NA	False	NA	NA	NA	37658483	37658656	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_37658500_37658700
PB_novel_44994_0	chrX	-	175	1	Intergenic	novelGene_5609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTTGA	NA	False	NA	NA	False	NA	NA	NA	37714322	37714147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_37714100_37714300
PB_novel_45002_0	chrX	-	177	1	Intergenic	novelGene_5610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACAGAAATA	NA	False	NA	NA	False	NA	NA	NA	37881262	37881085	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_37881100_37881300
PB_novel_45008_0	chrX	-	177	1	Intergenic	novelGene_5611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAAAAAAGTCACA	NA	False	NA	NA	False	NA	NA	NA	38781002	38780825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_38780800_38781000
PB_novel_45010_0	chrX	+	169	1	Intergenic	novelGene_5612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	40422593	40422762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_40422600_40422800
PB_novel_45011_0	chrX	+	159	1	Intergenic	novelGene_5613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	40423406	40423565	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_40423400_40423600
PB_novel_45014_0	chrX	-	2527	1	NIC	ENSMUSG00000037475.16	novel	7622	39	NA	NA	4	-29485	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41000774	40998247	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_40998200_41000800
PB_novel_45015_0	chrX	-	184	1	Intergenic	novelGene_5614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41008598	41008414	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_41008400_41008600
PB_novel_45016_0	chrX	-	169	1	Intergenic	novelGene_5615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATTTAAAAAAAGATTAC	NA	False	NA	NA	False	NA	NA	NA	41032729	41032560	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_41032600_41032700
PB_novel_45017_0	chrX	-	176	1	Intergenic	novelGene_5616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTGCT	NA	False	NA	NA	False	NA	NA	NA	41038757	41038581	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_41038600_41038800
PB_novel_45022_0	chrX	+	170	1	Intergenic	novelGene_5617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	549	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTTAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	41147522	41147692	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_41147500_41147700
PB_novel_45026_0	chrX	-	175	1	Intergenic	novelGene_5618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAATGACAA	NA	False	NA	NA	False	NA	NA	NA	41227290	41227115	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_41227100_41227300
PB_novel_45041_0	chrX	-	173	1	Intergenic	novelGene_5619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	46996109	46995936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_46995900_46996100
PB_novel_45046_0	chrX	+	172	1	Intergenic	novelGene_5620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATCTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47048588	47048760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_47048600_47048800
PB_novel_45047_0	chrX	-	176	1	Intergenic	novelGene_5621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAGAATAAATACT	NA	False	NA	NA	False	NA	NA	NA	47068451	47068275	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_47068300_47068500
PB_novel_45055_0	chrX	+	175	1	Intergenic	novelGene_5622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAGAATTAT	NA	False	NA	NA	False	NA	NA	NA	47298853	47299028	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_47298900_47299000
PB_novel_45057_0	chrX	+	176	1	Intergenic	novelGene_5623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	47351941	47352117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_47351900_47352100
PB_novel_45060_0	chrX	-	1123	1	Intergenic	novelGene_5624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47360479	47359356	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_47359400_47360500
PB_novel_45067_0	chrX	-	171	1	Intergenic	novelGene_5625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47465809	47465638	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_47465600_47465800
PB_novel_45070_0	chrX	-	3953	1	Intergenic	novelGene_5626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATCAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-17	NA	47529358	47525405	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_47525400_47529400
PB_novel_45073_0	chrX	-	205	1	Intergenic	novelGene_5627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTTAAAATTTATTTC	NA	False	NA	NA	False	NA	NA	NA	47561198	47560993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_47561000_47561200
PB_novel_45076_2	chrX	-	177	1	Intergenic	novelGene_5632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	302	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	47758428	47758251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_47758300_47758400
PB_novel_45079_0	chrX	-	176	1	Intergenic	novelGene_5628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	47596533	47596357	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_47596400_47596500
PB_novel_45081_0	chrX	-	4115	1	NIC	ENSMUSG00000036932.15	novel	2221	16	NA	NA	-4	-23858	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	47602307	47598192	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_47598200_47602300
PB_novel_45082_0	chrX	-	178	1	Intergenic	novelGene_5629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAATTGG	NA	False	NA	NA	False	NA	NA	NA	47619772	47619594	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_47619600_47619800
PB_novel_45085_0	chrX	-	175	1	Intergenic	novelGene_5630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTTAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47673131	47672956	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_47673000_47673100
PB_novel_45092_0	chrX	+	169	1	Intergenic	novelGene_5631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGTCTAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47756027	47756196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_47756000_47756200
PB_novel_45098_0	chrX	+	1704	1	Intergenic	novelGene_5633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48165639	48167343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_48165600_48167300
PB_novel_45111_0	chrX	-	3400	1	NIC	ENSMUSG00000085396.8	novel	1145	7	NA	NA	7197	-8959	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49716746	49713346	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_49713300_49716700
PB_novel_45115_0	chrX	+	1008	1	Intergenic	novelGene_5634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50203975	50204983	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_50204000_50205000
PB_novel_45117_0	chrX	+	176	1	Intergenic	novelGene_5635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAACTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50274856	50275032	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_50274900_50275000
PB_novel_45119_0	chrX	+	2463	1	Intergenic	novelGene_5636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50291190	50293653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_50291200_50293700
PB_novel_45120_0	chrX	-	3784	1	Genic_Genomic	ENSMUSG00000055780.11	novel	NA	NA	NA	NA	46260	2858	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAATATTAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	50843761	50839977	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_50840000_50843800
PB_novel_45121_0	chrX	-	177	1	Intergenic	novelGene_5637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAGAAAGGTG	NA	False	NA	NA	False	NA	NA	NA	50847830	50847653	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_50847700_50847800
PB_novel_45126_0	chrX	+	174	1	Intergenic	novelGene_5638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAACACATATTA	NA	False	NA	NA	False	NA	NA	NA	51222438	51222612	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_51222400_51222600
PB_novel_45129_0	chrX	+	82	1	Intergenic	novelGene_5639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	51262011	51262093	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_51262000_51262100
PB_novel_45139_0	chrX	+	177	1	Intergenic	novelGene_5640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATAAGGCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	51817035	51817212	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_51817000_51817200
PB_novel_45150_0	chrX	+	1135	1	Genic_Genomic	ENSMUSG00000025626.17	novel	NA	NA	NA	NA	-4	-27220	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	52001138	52002273	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_+_52001100_52002300
PB_novel_45151_0	chrX	-	4168	1	Antisense	novelGene_ENSMUSG00000025626.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	52015612	52011444	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_-_52011400_52015600
PB_novel_45153_0	chrX	+	176	1	Intergenic	novelGene_5641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAGAGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	52019417	52019593	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_52019400_52019600
PB_novel_45166_0	chrX	+	201	1	Intergenic	novelGene_5642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53255636	53255837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_53255600_53255800
PB_novel_45171_0	chrX	-	176	1	Intergenic	novelGene_5643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAGAAAAGC	NA	False	NA	NA	False	NA	NA	NA	55386249	55386073	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_55386100_55386200
PB_novel_45177_0	chrX	-	177	1	Intergenic	novelGene_5644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAGAAAAGAATTTAAAG	NA	False	NA	NA	False	NA	NA	NA	55522449	55522272	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_55522300_55522400
PB_novel_45186_0	chrX	+	177	1	Intergenic	novelGene_5645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	55882495	55882672	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_55882500_55882700
PB_novel_45188_0	chrX	+	175	1	Intergenic	novelGene_5646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	55912448	55912623	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_55912400_55912600
PB_novel_45189_0	chrX	-	191	1	Intergenic	novelGene_5647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAATTTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56121233	56121042	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_56121000_56121200
PB_novel_45192_0	chrX	+	178	1	Intergenic	novelGene_5648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	56393454	56393632	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_56393500_56393600
PB_novel_45195_0	chrX	+	172	1	Intergenic	novelGene_5649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGAGTGTCATTCTG	NA	False	NA	NA	False	NA	NA	NA	56424912	56425084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_56424900_56425100
PB_novel_45198_2	chrX	+	172	1	Intergenic	novelGene_5650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAATAAATAAATAAA	2516	False	NA	NA	False	NA	NA	NA	56795260	56795432	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_56795300_56795400
PB_novel_45200_0	chrX	+	177	1	Intergenic	novelGene_5651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAATTGTAT	NA	False	NA	NA	False	NA	NA	NA	56990660	56990837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_56990700_56990800
PB_novel_45201_0	chrX	+	180	1	Intergenic	novelGene_5652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57017780	57017960	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_57017800_57018000
PB_novel_45202_0	chrX	+	172	1	Intergenic	novelGene_5653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAACAAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	57022085	57022257	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_57022100_57022300
PB_novel_45210_0	chrX	-	173	1	Intergenic	novelGene_5654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAATAAACTGGATTA	NA	False	NA	NA	False	NA	NA	NA	59040870	59040697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_59040700_59040900
PB_novel_45214_0	chrX	-	160	1	Intergenic	novelGene_5655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGACTTGCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59173368	59173208	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_59173200_59173400
PB_novel_45220_0	chrX	-	2011	1	Genic_Genomic	ENSMUSG00000031139.17	novel	NA	NA	NA	NA	-62	-121182	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-11	NA	59224511	59222500	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_59222500_59224500
PB_novel_45222_1	chrX	+	180	1	Intergenic	novelGene_5656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATAAATCTTA	NA	False	NA	NA	False	NA	NA	NA	59259526	59259706	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_59259500_59259700
PB_novel_45224_0	chrX	-	176	1	Intergenic	novelGene_5657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAGAAAAAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	59283104	59282928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_59282900_59283100
PB_novel_45236_0	chrX	-	176	1	Intergenic	novelGene_5658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATCAGCTCAAAATT	NA	False	NA	NA	False	NA	NA	NA	59796562	59796386	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_59796400_59796600
PB_novel_45239_0	chrX	-	175	1	Intergenic	novelGene_5659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59949611	59949436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_59949400_59949600
PB_novel_45242_0	chrX	-	176	1	Intergenic	novelGene_5660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	60735872	60735696	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_60735700_60735900
PB_novel_45246_0	chrX	-	176	1	Intergenic	novelGene_5661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAGTCA	NA	False	NA	NA	False	NA	NA	NA	62977543	62977367	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_62977400_62977500
PB_novel_45247_0	chrX	+	435	1	Intergenic	novelGene_5662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	63542059	63542494	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_63542100_63542500
PB_novel_45258_0	chrX	+	171	1	Intergenic	novelGene_5663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTAAAAAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	67702880	67703051	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_67702900_67703100
PB_novel_45261_0	chrX	-	173	1	Intergenic	novelGene_5664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67814584	67814411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_67814400_67814600
PB_novel_45267_0	chrX	+	176	1	Intergenic	novelGene_5665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAGAATTC	NA	False	NA	NA	False	NA	NA	NA	70204136	70204312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_70204100_70204300
PB_novel_45269_0	chrX	+	173	1	Intergenic	novelGene_5666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	70500911	70501084	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_70500900_70501100
PB_novel_45270_0	chrX	+	172	1	Intergenic	novelGene_5667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70578649	70578821	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_70578600_70578800
PB_novel_45271_0	chrX	-	179	1	Intergenic	novelGene_5668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70589844	70589665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_70589700_70589800
PB_novel_45273_0	chrX	-	169	1	Intergenic	novelGene_5669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAATTACAG	NA	False	NA	NA	False	NA	NA	NA	70726802	70726633	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_70726600_70726800
PB_novel_45278_0	chrX	+	177	1	Intergenic	novelGene_5670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	263	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCTA	NA	False	NA	NA	False	NA	NA	NA	71631926	71632103	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_71631900_71632100
PB_novel_45286_0	chrX	-	153	1	Intergenic	novelGene_5671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGAAAGATGGAGA	5563	False	NA	NA	False	NA	NA	NA	72269189	72269036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_72269000_72269200
PB_novel_45290_0	chrX	+	174	1	Intergenic	novelGene_5672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAGTTAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	72368361	72368535	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_72368400_72368500
PB_novel_45300_0	chrX	-	176	1	Intergenic	novelGene_5673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAATAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72779225	72779049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_72779000_72779200
PB_novel_45301_0	chrX	-	171	1	Intergenic	novelGene_5674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	187	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	72783323	72783152	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_72783200_72783300
PB_novel_45303_0	chrX	+	176	1	Intergenic	novelGene_5675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72791918	72792094	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_72791900_72792100
PB_novel_45309_0	chrX	-	167	1	Intergenic	novelGene_5676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATATTTAAAAAAAATGAAA	NA	False	NA	NA	False	NA	NA	NA	72877832	72877665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_72877700_72877800
PB_novel_45310_0	chrX	+	171	1	Intergenic	novelGene_5677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	72896632	72896803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_72896600_72896800
PB_novel_45312_0	chrX	-	164	1	Intergenic	novelGene_5678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAATCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72946274	72946110	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_72946100_72946300
PB_novel_45313_0	chrX	-	2674	1	Genic_Genomic	ENSMUSG00000031387.15	novel	NA	NA	NA	NA	925	-664	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72969082	72966408	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_72966400_72969100
PB_novel_45314_0	chrX	+	164	1	Intergenic	novelGene_5679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCTTTAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	72970422	72970586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_72970400_72970600
PB_novel_45315_0	chrX	-	188	1	Intergenic	novelGene_5680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAGACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	72975217	72975029	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_72975000_72975200
PB_novel_45316_1	chrX	-	171	1	Intergenic	novelGene_5682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTTAAAAAAAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	73054339	73054168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_73054200_73054300
PB_novel_45320_0	chrX	-	165	1	Intergenic	novelGene_5681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAGAAGAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	73047199	73047034	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_73047000_73047200
PB_novel_45322_0	chrX	+	169	1	Intergenic	novelGene_5683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATATTTAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	73056151	73056320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_73056200_73056300
PB_novel_45330_0	chrX	+	171	1	Intergenic	novelGene_5684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	73319245	73319416	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_73319200_73319400
PB_novel_45332_0	chrX	-	177	1	Intergenic	novelGene_5685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	73360768	73360591	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_73360600_73360800
PB_novel_45336_0	chrX	-	173	1	Intergenic	novelGene_5686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAACATTTCCCAAAAAA	8263	False	NA	NA	False	NA	NA	NA	73393454	73393281	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_73393300_73393500
PB_novel_45351_0	chrX	+	184	1	Intergenic	novelGene_5687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAGGTCAAAAGA	NA	False	NA	NA	False	NA	NA	NA	74100551	74100735	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_74100600_74100700
PB_novel_45352_0	chrX	-	185	1	Intergenic	novelGene_5688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74109081	74108896	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_74108900_74109100
PB_novel_45358_0	chrX	+	174	1	Intergenic	novelGene_5689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTAAAAAAAGAATCTTA	1680	False	NA	NA	False	NA	NA	NA	74262572	74262746	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_74262600_74262700
PB_novel_45371_0	chrX	+	176	1	Intergenic	novelGene_5690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74928043	74928219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_74928000_74928200
PB_novel_45372_0	chrX	+	173	1	Intergenic	novelGene_5691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAGAAAAAA	5807	False	NA	NA	False	NA	NA	NA	75110248	75110421	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_75110200_75110400
PB_novel_45375_0	chrX	+	173	1	Intergenic	novelGene_5692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTAAAAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	75539839	75540012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_75539800_75540000
PB_novel_45379_0	chrX	+	173	1	Intergenic	novelGene_5693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAACCT	NA	False	NA	NA	False	NA	NA	NA	76562261	76562434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_76562300_76562400
PB_novel_45385_0	chrX	-	168	1	Intergenic	novelGene_5694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATACATAAATACATAAAT	NA	False	NA	NA	False	NA	NA	NA	77247096	77246928	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_77246900_77247100
PB_novel_45392_0	chrX	+	167	1	Intergenic	novelGene_5695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTAAAAAAAAATCTC	NA	False	NA	NA	False	NA	NA	NA	78340497	78340664	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_78340500_78340700
PB_novel_45395_0	chrX	+	188	1	Intergenic	novelGene_5696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	78766395	78766583	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_78766400_78766600
PB_novel_45422_0	chrX	-	6952	1	Intergenic	novelGene_5697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACTAAAAAAAAAAAAAA	NA	False	NA	NA	False	CATAAA	-35	NA	87646476	87639524	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_87639500_87646500
PB_novel_45423_0	chrX	+	178	1	Intergenic	novelGene_5698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	87877894	87878072	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_87877900_87878100
PB_novel_45425_0	chrX	-	177	1	Intergenic	novelGene_5699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAATCCCTACCAT	NA	False	NA	NA	False	NA	NA	NA	87966901	87966724	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_87966700_87966900
PB_novel_45438_0	chrX	+	177	1	Intergenic	novelGene_5700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAACTATTTC	NA	False	NA	NA	False	NA	NA	NA	90385409	90385586	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_90385400_90385600
PB_novel_45442_0	chrX	-	176	1	Intergenic	novelGene_5701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	91166965	91166789	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_91166800_91167000
PB_novel_45445_0	chrX	+	154	1	Intergenic	novelGene_5702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	92253042	92253196	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_92253000_92253200
PB_novel_45458_0	chrX	+	176	1	Intergenic	novelGene_5703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAGAAAATGAT	NA	False	NA	NA	False	NA	NA	NA	92821958	92822134	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_92822000_92822100
PB_novel_45459_0	chrX	-	176	1	Intergenic	novelGene_5704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	92836077	92835901	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_92835900_92836100
PB_novel_45471_0	chrX	+	171	1	Intergenic	novelGene_5705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	93088641	93088812	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_93088600_93088800
PB_novel_45474_0	chrX	+	169	1	Intergenic	novelGene_5706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	93133185	93133354	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_93133200_93133400
PB_novel_45477_0	chrX	-	161	2	Intergenic	novelGene_5707	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAATTCTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	93139118	93137762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_93137772_93138966
PB_novel_45477_1	chrX	-	179	1	Intergenic	novelGene_5708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAGAAAATATAAA	NA	False	NA	NA	False	NA	NA	NA	93139117	93138938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_93138900_93139100
PB_novel_45480_1	chrX	+	177	1	Intergenic	novelGene_5709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	296	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	93173102	93173279	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_93173100_93173300
PB_novel_45483_0	chrX	+	174	1	Intergenic	novelGene_5710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAGAAAAGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	93188408	93188582	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_93188400_93188600
PB_novel_45484_0	chrX	-	180	1	Intergenic	novelGene_5711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	93207300	93207120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_93207100_93207300
PB_novel_45485_1	chrX	-	179	2	Antisense	novelGene_ENSMUSG00000043929.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	33	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	93305773	93207120	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_-_93207220_93305693
PB_novel_45494_0	chrX	-	176	1	Intergenic	novelGene_5712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAACCC	NA	False	NA	NA	False	NA	NA	NA	93231531	93231355	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_93231400_93231500
PB_novel_45495_0	chrX	-	177	1	Intergenic	novelGene_5713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATATTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93249012	93248835	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_93248800_93249000
PB_novel_45499_0	chrX	+	177	1	Intergenic	novelGene_5714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAACAAAAA	3481	False	NA	NA	False	NA	NA	NA	93289991	93290168	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_93290000_93290200
PB_novel_45503_0	chrX	-	176	1	Intergenic	novelGene_5715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAATTTT	NA	False	NA	NA	False	NA	NA	NA	93330068	93329892	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_93329900_93330100
PB_novel_45516_0	chrX	-	178	1	Intergenic	novelGene_5716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGGAAGACA	9464	False	NA	NA	False	NA	NA	NA	94112859	94112681	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_94112700_94112900
PB_novel_45519_0	chrX	+	176	1	Intergenic	novelGene_5717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	94427761	94427937	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_94427800_94427900
PB_novel_45540_0	chrX	-	3050	1	NIC	ENSMUSG00000034457.11	novel	4752	8	NA	NA	-16	-32593	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96420794	96417744	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_-_96417700_96420800
PB_novel_45555_0	chrX	-	173	1	Intergenic	novelGene_5718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAACTTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	98317718	98317545	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_98317500_98317700
PB_novel_45564_0	chrX	-	180	1	Intergenic	novelGene_5719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAGAAAGAAATA	NA	False	NA	NA	False	NA	NA	NA	99595191	99595011	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_99595000_99595200
PB_novel_45571_0	chrX	+	167	1	Intergenic	novelGene_5720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATTTTTAAAAAATTAAA	NA	False	NA	NA	False	NA	NA	NA	100080401	100080568	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_100080400_100080600
PB_novel_45575_0	chrX	+	159	1	Intergenic	novelGene_5721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAATAAATAAATG	NA	False	NA	NA	False	NA	NA	NA	100134916	100135075	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_100134900_100135100
PB_novel_45576_0	chrX	-	175	1	Intergenic	novelGene_5722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	100143264	100143089	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_100143100_100143300
PB_novel_45577_0	chrX	-	176	2	Intergenic	novelGene_5723	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAATTATTTAA	NA	False	NA	NA	False	NA	NA	NA	100187205	100150836	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_100150892_100187084
PB_novel_45577_2	chrX	-	179	1	Intergenic	novelGene_5726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAAAACAACAA	NA	False	NA	NA	False	NA	NA	NA	100187204	100187025	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_100187000_100187200
PB_novel_45579_0	chrX	-	162	1	Intergenic	novelGene_5724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAACAAATATTTTAAAAAG	NA	False	NA	NA	False	NA	NA	NA	100151598	100151436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_100151400_100151600
PB_novel_45582_0	chrX	+	177	1	Intergenic	novelGene_5725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100176777	100176954	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_100176800_100177000
PB_novel_45592_0	chrX	+	158	1	Intergenic	novelGene_5727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCCTTA	NA	False	NA	NA	False	NA	NA	NA	100477589	100477747	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_100477600_100477700
PB_novel_45599_0	chrX	-	174	1	Intergenic	novelGene_5728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100535813	100535639	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_100535600_100535800
PB_novel_45600_6	chrX	-	173	2	Antisense	novelGene_ENSMUSG00000081674.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	100565607	100557406	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_-_100557452_100565479
PB_novel_45606_0	chrX	-	169	1	Intergenic	novelGene_5729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	100557579	100557410	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_100557400_100557600
PB_novel_45608_0	chrX	+	1196	2	Intergenic	novelGene_5730	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100565880	100567326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_100567028_100567277
PB_novel_45618_1	chrX	+	181	1	Intergenic	novelGene_5731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAATA	NA	False	NA	NA	False	NA	NA	NA	100675764	100675945	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_100675800_100675900
PB_novel_45620_3	chrX	-	3940	15	Antisense	novelGene_ENSMUSG00000034160.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	100719787	100697228	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_-_100699345_100704855_100704936_100706962_100707161_100707448_100707590_100708249_100708350_100710882_100711041_100711123_100711222_100711583_100711764_100713360_100713520_100713634_100713725_100716051_100716178_100716646_100716818_100716926_100717044_100717145_100717317_100719752
PB_novel_45621_0	chrX	-	175	1	Intergenic	novelGene_5732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATCACG	NA	False	NA	NA	False	NA	NA	NA	100688426	100688251	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_100688300_100688400
PB_novel_45629_0	chrX	-	185	1	Intergenic	novelGene_5733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATCTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100731029	100730844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_100730800_100731000
PB_novel_45631_0	chrX	-	4041	1	FSM	ENSMUSG00000084197.2	ENSMUST00000122027.2	526	1	-488	-3027	-488	3027	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100753655	100749614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chrX_-_100749600_100753700
PB_novel_45631_1	chrX	-	3859	2	Genic_Genomic	ENSMUSG00000084197.2	novel	526	1	NA	NA	-488	3027	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100753655	100749614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_100751938_100752119
PB_novel_45632_0	chrX	+	171	1	Intergenic	novelGene_5734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAGAAA	3341	False	NA	NA	False	NA	NA	NA	100771071	100771242	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_100771100_100771200
PB_novel_45640_0	chrX	+	181	1	Intergenic	novelGene_5735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAAAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	101083253	101083434	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_101083300_101083400
PB_novel_45641_0	chrX	-	176	1	Intergenic	novelGene_5736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCTGTATATTGAA	NA	False	NA	NA	False	NA	NA	NA	101100133	101099957	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_101100000_101100100
PB_novel_45649_0	chrX	-	178	1	Intergenic	novelGene_5737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAATAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	101246121	101245943	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_101245900_101246100
PB_novel_45650_0	chrX	-	174	1	Intergenic	novelGene_5738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAGAAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	101247770	101247596	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_101247600_101247800
PB_novel_45651_0	chrX	-	179	1	Intergenic	novelGene_5739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	101248182	101248003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_101248000_101248200
PB_novel_45653_0	chrX	-	170	1	Intergenic	novelGene_5740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACAAAAGAGCA	9544	False	NA	NA	False	NA	NA	NA	101258679	101258509	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_101258500_101258700
PB_novel_45655_0	chrX	-	129	1	Intergenic	novelGene_5741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAACAAAAAAA	9132	False	NA	NA	False	NA	NA	NA	101259091	101258962	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_101259000_101259100
PB_novel_45657_0	chrX	-	180	1	Intergenic	novelGene_5742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAATAAATGTTAAA	5498	False	NA	NA	False	NA	NA	NA	101268454	101268274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_101268300_101268500
PB_novel_45659_0	chrX	-	177	1	Intergenic	novelGene_5743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAAACCTTCTATC	NA	False	NA	NA	False	NA	NA	NA	101277902	101277725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_101277700_101277900
PB_novel_45660_0	chrX	-	179	1	Intergenic	novelGene_5744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTAAAAAAAAAAAGAACA	NA	False	NA	NA	False	NA	NA	NA	101284410	101284231	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_101284200_101284400
PB_novel_45677_0	chrX	+	180	1	Intergenic	novelGene_5745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAACTGAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	102285449	102285629	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_102285400_102285600
PB_novel_45678_0	chrX	+	176	1	Intergenic	novelGene_5746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAATACAAATC	NA	False	NA	NA	False	NA	NA	NA	102285902	102286078	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_102285900_102286100
PB_novel_45680_4	chrX	+	177	1	Intergenic	novelGene_5748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	294	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAGTACTG	NA	False	NA	NA	False	NA	NA	NA	102315394	102315571	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_102315400_102315600
PB_novel_45682_0	chrX	+	176	1	Intergenic	novelGene_5747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTAT	NA	False	NA	NA	False	NA	NA	NA	102301001	102301177	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_102301000_102301200
PB_novel_45683_0	chrX	+	180	1	Intergenic	novelGene_5749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAGAGAGAAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	102333328	102333508	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_102333300_102333500
PB_novel_45686_0	chrX	-	156	1	Intergenic	novelGene_5750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAATAAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102364053	102363897	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_102363900_102364100
PB_novel_45687_0	chrX	+	173	1	Intergenic	novelGene_5751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTTTAAAAAAAGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	102378211	102378384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_102378200_102378400
PB_novel_45690_0	chrX	+	174	1	Intergenic	novelGene_5752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	102431063	102431237	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_102431100_102431200
PB_novel_45695_0	chrX	-	270	1	Intergenic	novelGene_5753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	102493761	102493491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_102493500_102493800
PB_novel_45696_0	chrX	+	3859	1	Antisense	novelGene_ENSMUSG00000086503.5_AS_novelGene_ENSMUSG00002076282.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-38	NA	102512748	102516607	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_+_102512700_102516600
PB_novel_45699_0	chrX	+	228	1	Intergenic	novelGene_5754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102656901	102657129	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_102656900_102657100
PB_novel_45701_0	chrX	+	174	1	Intergenic	novelGene_5755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAGTATATACTGAAAA	NA	False	NA	NA	False	NA	NA	NA	102671399	102671573	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_102671400_102671600
PB_novel_45702_0	chrX	-	188	1	Intergenic	novelGene_5756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	102684251	102684063	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_102684100_102684300
PB_novel_45708_0	chrX	+	167	1	Intergenic	novelGene_5757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAGAAACAGAG	NA	False	NA	NA	False	NA	NA	NA	102971592	102971759	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_102971600_102971800
PB_novel_45714_0	chrX	+	1637	1	Intergenic	novelGene_5758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103017103	103018740	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_103017100_103018700
PB_novel_45715_0	chrX	-	168	1	Intergenic	novelGene_5759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	103089536	103089368	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_103089400_103089500
PB_novel_45718_0	chrX	+	210	1	Intergenic	novelGene_5760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGTCTTTAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103228455	103228665	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_103228500_103228700
PB_novel_45724_0	chrX	+	176	1	Intergenic	novelGene_5761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGATGTAAGA	NA	False	NA	NA	False	NA	NA	NA	103387127	103387303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_103387100_103387300
PB_novel_45730_0	chrX	+	3610	1	Intergenic	novelGene_5762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAATTAAAATAAATT	NA	False	NA	NA	False	NA	NA	NA	103552184	103555794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_103552200_103555800
PB_novel_45746_0	chrX	+	182	1	Intergenic	novelGene_5763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAATAAATTCTAATA	NA	False	NA	NA	False	NA	NA	NA	104942611	104942793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_104942600_104942800
PB_novel_45749_3	chrX	+	3270	1	Intergenic	novelGene_5764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	104960792	104964062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_104960800_104964100
PB_novel_45750_0	chrX	+	179	1	Intergenic	novelGene_5765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	104968807	104968986	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_104968800_104969000
PB_novel_45756_0	chrX	-	176	1	Intergenic	novelGene_5766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAAAAAGATCC	NA	False	NA	NA	False	NA	NA	NA	105016651	105016475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_105016500_105016700
PB_novel_45762_0	chrX	+	172	1	Intergenic	novelGene_5767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAGACACACAGTAAA	NA	False	NA	NA	False	NA	NA	NA	105061345	105061517	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_105061300_105061500
PB_novel_45764_0	chrX	-	182	1	Intergenic	novelGene_5768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7623	False	NA	NA	False	NA	NA	NA	105062490	105062308	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_105062300_105062500
PB_novel_45771_0	chrX	+	171	1	Intergenic	novelGene_5769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	105219679	105219850	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_105219700_105219800
PB_novel_45781_0	chrX	-	175	1	Intergenic	novelGene_5770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAATTAGGAT	NA	False	NA	NA	False	NA	NA	NA	107641402	107641227	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_107641200_107641400
PB_novel_45785_1	chrX	-	162	1	Intergenic	novelGene_5771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108123086	108122924	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_108122900_108123100
PB_novel_45787_0	chrX	-	188	1	Intergenic	novelGene_5772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATCTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109172785	109172597	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_109172600_109172800
PB_novel_45788_1	chrX	+	180	1	Intergenic	novelGene_5773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	110212756	110212936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_110212800_110212900
PB_novel_45795_0	chrX	-	174	1	Intergenic	novelGene_5774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	111661331	111661157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_111661200_111661300
PB_novel_45797_0	chrX	+	1274	1	Intergenic	novelGene_5775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112067069	112068343	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_112067100_112068300
PB_novel_45805_0	chrX	+	156	1	Intergenic	novelGene_5776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	113813857	113814013	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_113813900_113814000
PB_novel_45809_0	chrX	+	168	1	Intergenic	novelGene_5777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	114020625	114020793	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_114020600_114020800
PB_novel_45814_23	chrX	-	5165	1	Intergenic	novelGene_5778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5629	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGATGG	NA	False	NA	NA	False	NA	NA	NA	116231724	116226559	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_116226600_116231700
PB_novel_45816_0	chrX	-	178	1	Intergenic	novelGene_5779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAGATAA	NA	False	NA	NA	False	NA	NA	NA	117353982	117353804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_117353800_117354000
PB_novel_45817_0	chrX	+	181	1	Intergenic	novelGene_5780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATTACAGGA	NA	False	NA	NA	False	NA	NA	NA	117370132	117370313	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_117370100_117370300
PB_novel_45823_0	chrX	-	697	1	Intergenic	novelGene_5781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAACAAAAACAA	NA	False	NA	NA	False	AATAAA	-17	NA	120244394	120243697	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_120243700_120244400
PB_novel_45824_1	chrX	-	175	1	Intergenic	novelGene_5782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	275	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATTAAA	NA	False	NA	NA	False	NA	NA	NA	121944370	121944195	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_121944200_121944400
PB_novel_45837_0	chrX	+	177	1	Intergenic	novelGene_5783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAGAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	126443939	126444116	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_126443900_126444100
PB_novel_45840_0	chrX	+	176	1	Intergenic	novelGene_5784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	126929458	126929634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_126929500_126929600
PB_novel_45843_0	chrX	-	181	1	Intergenic	novelGene_5785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	128455488	128455307	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_128455300_128455500
PB_novel_45848_0	chrX	-	188	1	Intergenic	novelGene_5786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	234	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATACAAGCATACAG	NA	False	NA	NA	False	NA	NA	NA	128660520	128660332	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_128660300_128660500
PB_novel_45850_0	chrX	-	172	1	Intergenic	novelGene_5787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128756556	128756384	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_128756400_128756600
PB_novel_45851_0	chrX	-	3505	1	Intergenic	novelGene_5788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128834825	128831320	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_128831300_128834800
PB_novel_45852_0	chrX	-	237	1	Intergenic	novelGene_5789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAATGATTTTCC	NA	False	NA	NA	False	NA	NA	NA	128876396	128876159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_128876200_128876400
PB_novel_45857_0	chrX	-	253	1	Intergenic	novelGene_5790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGACGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129067986	129067733	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_129067700_129068000
PB_novel_45858_0	chrX	-	175	1	Intergenic	novelGene_5791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	397	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	129068218	129068043	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_129068000_129068200
PB_novel_45861_0	chrX	-	4598	1	Intergenic	novelGene_5792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129352827	129348229	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_129348200_129352800
PB_novel_45864_0	chrX	+	169	1	Intergenic	novelGene_5793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATACATAAAATAAATTAAT	NA	False	NA	NA	False	NA	NA	NA	129455712	129455881	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_129455700_129455900
PB_novel_45866_0	chrX	+	174	1	Intergenic	novelGene_5794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAGTATAAAA	4779	False	NA	NA	False	NA	NA	NA	130529359	130529533	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_130529400_130529500
PB_novel_45867_0	chrX	+	177	1	Intergenic	novelGene_5795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	130781352	130781529	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_130781400_130781500
PB_novel_45869_0	chrX	+	177	1	Intergenic	novelGene_5796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGATGCTTAT	NA	False	NA	NA	False	NA	NA	NA	132500989	132501166	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_132501000_132501200
PB_novel_45873_0	chrX	+	176	1	Intergenic	novelGene_5797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAGAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	133053556	133053732	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_133053600_133053700
PB_novel_45876_0	chrX	+	178	1	Intergenic	novelGene_5798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	133206913	133207091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_133206900_133207100
PB_novel_45877_0	chrX	+	3204	1	NIC	ENSMUSG00000031262.13	novel	3227	23	NA	NA	-6	1146	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133208941	133212145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_133208900_133212100
PB_novel_45878_0	chrX	-	1208	1	Antisense	novelGene_ENSMUSG00000031262.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133225511	133224303	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_-_133224300_133225500
PB_novel_45890_0	chrX	-	176	1	Intergenic	novelGene_5799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	133665456	133665280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_133665300_133665500
PB_novel_45891_0	chrX	+	176	1	Intergenic	novelGene_5800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGTAACT	NA	False	NA	NA	False	NA	NA	NA	133799618	133799794	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_133799600_133799800
PB_novel_45913_0	chrX	-	173	1	Intergenic	novelGene_5801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAGACA	3034	False	NA	NA	False	NA	NA	NA	135022291	135022118	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_135022100_135022300
PB_novel_45914_0	chrX	-	174	1	Intergenic	novelGene_5802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAATTGGGATAATAT	4774	False	NA	NA	False	NA	NA	NA	135031321	135031147	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_135031100_135031300
PB_novel_45919_0	chrX	-	176	1	Intergenic	novelGene_5803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAGACACT	NA	False	NA	NA	False	NA	NA	NA	135127378	135127202	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_135127200_135127400
PB_novel_45930_0	chrX	-	176	1	Intergenic	novelGene_5804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	136075154	136074978	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_136075000_136075200
PB_novel_45944_0	chrX	-	158	1	Intergenic	novelGene_5805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAAAAGAACAATA	NA	False	NA	NA	False	NA	NA	NA	139256676	139256518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_139256500_139256700
PB_novel_45952_0	chrX	-	176	1	Intergenic	novelGene_5806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATCTCAAAA	NA	False	NA	NA	False	NA	NA	NA	139385302	139385126	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_139385100_139385300
PB_novel_45959_0	chrX	+	237	1	Intergenic	novelGene_5807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAGAATAGGGAA	NA	False	NA	NA	False	AATAAA	-17	NA	141081996	141082233	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_141082000_141082200
PB_novel_45961_0	chrX	-	173	1	Intergenic	novelGene_5808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTTTAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	141254668	141254495	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_141254500_141254700
PB_novel_45968_0	chrX	+	3442	1	NIC	ENSMUSG00000047045.18	novel	1742	7	NA	NA	-1	-86432	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	141464412	141467854	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_141464400_141467900
PB_novel_45982_0	chrX	+	177	1	Intergenic	novelGene_5809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGATTATGAA	NA	False	NA	NA	False	NA	NA	NA	143030337	143030514	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_143030300_143030500
PB_novel_45985_0	chrX	-	171	1	Intergenic	novelGene_5810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	143052684	143052513	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_143052500_143052700
PB_novel_45989_0	chrX	-	177	1	Intergenic	novelGene_5811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATTATGGTC	NA	False	NA	NA	False	NA	NA	NA	143072076	143071899	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_143071900_143072100
PB_novel_45991_0	chrX	-	179	1	Intergenic	novelGene_5812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAGAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	143076698	143076519	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_143076500_143076700
PB_novel_45998_0	chrX	-	3360	1	Antisense	novelGene_ENSMUSG00000041718.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATGAAAAGCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	143123061	143119701	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_-_143119700_143123100
PB_novel_46005_0	chrX	+	180	1	Intergenic	novelGene_5813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAGAAAAAAAAGAACT	NA	False	NA	NA	False	NA	NA	NA	143271723	143271903	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_143271700_143271900
PB_novel_46027_0	chrX	+	124	1	Intergenic	novelGene_5814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	6251	False	NA	NA	False	NA	NA	NA	149790707	149790831	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_149790700_149790800
PB_novel_46028_0	chrX	+	178	1	Intergenic	novelGene_5815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATATATTTTAAAAA	9277	False	NA	NA	False	NA	NA	NA	149793733	149793911	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_149793700_149793900
PB_novel_46035_0	chrX	+	177	1	Intergenic	novelGene_5816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAACACAA	NA	False	NA	NA	False	NA	NA	NA	149858185	149858362	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_149858200_149858400
PB_novel_46041_0	chrX	+	190	1	Intergenic	novelGene_5817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATGAAGAGTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149877297	149877487	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_149877300_149877500
PB_novel_46046_0	chrX	-	180	1	Intergenic	novelGene_5818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	149956229	149956049	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_149956000_149956200
PB_novel_46055_0	chrX	-	196	1	Intergenic	novelGene_5819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAGAATGAAATTTG	NA	False	NA	NA	False	NA	NA	NA	150185687	150185491	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_150185500_150185700
PB_novel_46067_0	chrX	-	177	1	Intergenic	novelGene_5820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACAAAGAT	NA	False	NA	NA	False	NA	NA	NA	150610103	150609926	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_150609900_150610100
PB_novel_46068_1	chrX	-	166	1	Intergenic	novelGene_5821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAGTCTTTAAAAAAAAA	9029	False	NA	NA	False	NA	NA	NA	150805263	150805097	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_150805100_150805300
PB_novel_46070_3	chrX	+	179	1	Intergenic	novelGene_5823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	150958991	150959170	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_150959000_150959200
PB_novel_46074_0	chrX	+	173	1	Intergenic	novelGene_5822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAAGAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	150923599	150923772	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_150923600_150923800
PB_novel_46077_0	chrX	-	1388	1	Intergenic	novelGene_5824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-5	NA	151035662	151034274	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_151034300_151035700
PB_novel_46080_0	chrX	+	175	1	Intergenic	novelGene_5825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	151064311	151064486	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_151064300_151064500
PB_novel_46082_0	chrX	-	181	1	Intergenic	novelGene_5826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAAAAGTATTCTCA	NA	False	NA	NA	False	NA	NA	NA	151097400	151097219	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_151097200_151097400
PB_novel_46083_0	chrX	+	157	1	Antisense	novelGene_ENSMUSG00000087403.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	151102756	151102913	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_+_151102800_151102900
PB_novel_46087_0	chrX	-	173	1	Intergenic	novelGene_5827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAGAAATAAT	NA	False	NA	NA	False	NA	NA	NA	151174522	151174349	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_151174300_151174500
PB_novel_46089_0	chrX	+	159	1	Intergenic	novelGene_5828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	151388521	151388680	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_151388500_151388700
PB_novel_46095_0	chrX	+	176	1	Intergenic	novelGene_5829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	151502290	151502466	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_151502300_151502500
PB_novel_46098_1	chrX	+	178	1	Intergenic	novelGene_5830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATGGCAGA	NA	False	NA	NA	False	NA	NA	NA	151539640	151539818	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_151539600_151539800
PB_novel_46099_0	chrX	-	198	1	Intergenic	novelGene_5831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAACATA	NA	False	NA	NA	False	NA	NA	NA	151592110	151591912	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_151591900_151592100
PB_novel_46101_0	chrX	-	185	1	Intergenic	novelGene_5832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151885276	151885091	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_151885100_151885300
PB_novel_46105_0	chrX	-	169	1	Intergenic	novelGene_5833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAAATCTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151986360	151986191	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_151986200_151986400
PB_novel_46109_0	chrX	+	177	1	Intergenic	novelGene_5834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAATAATAATGAT	739	False	NA	NA	False	NA	NA	NA	152002630	152002807	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_152002600_152002800
PB_novel_46114_0	chrX	-	171	1	Intergenic	novelGene_5835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAATACAATGTATAAA	NA	False	NA	NA	False	NA	NA	NA	152084856	152084685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_152084700_152084900
PB_novel_46119_0	chrX	-	152	1	Intergenic	novelGene_5836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAATTAAAAAAAAA	7087	False	NA	NA	False	NA	NA	NA	152320373	152320221	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_152320200_152320400
PB_novel_46123_0	chrX	-	180	1	Intergenic	novelGene_5837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAGAGAAAT	5893	False	NA	NA	False	NA	NA	NA	153256984	153256804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_153256800_153257000
PB_novel_46131_0	chrX	+	6401	1	NIC	ENSMUSG00000025287.16	novel	1752	15	NA	NA	35	5358	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-36	NA	154045535	154051936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chrX_+_154045500_154051900
PB_novel_46134_0	chrX	-	1215	1	Intergenic	novelGene_5838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAATTAATAAAAA	NA	False	NA	NA	False	ACTAAA	-38	NA	154084937	154083722	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_154083700_154084900
PB_novel_46135_2	chrX	-	4116	2	Genic_Genomic	ENSMUSG00000052157.5	novel	1551	1	NA	NA	-344	3469	multi-exon	FALSE	canonical	3	17	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAAATTAATAA	NA	False	NA	NA	False	ACTAAA	-35	NA	154089089	154083725	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chrX_-_154086142_154087389
PB_novel_46143_0	chrX	-	177	1	Intergenic	novelGene_5839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	154953308	154953131	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_154953100_154953300
PB_novel_46144_0	chrX	-	176	1	Intergenic	novelGene_5840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAACAGCATC	NA	False	NA	NA	False	NA	NA	NA	155253653	155253477	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_155253500_155253700
PB_novel_46151_0	chrX	-	2910	1	Antisense	novelGene_ENSMUSG00000082002.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156325091	156322181	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_-_156322200_156325100
PB_novel_46152_0	chrX	+	850	2	Antisense	novelGene_ENSMUSG00000046873.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156337958	156339326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_+_156338075_156338592
PB_novel_46153_0	chrX	+	1280	1	Intergenic	novelGene_5841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156344991	156346271	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_156345000_156346300
PB_novel_46156_0	chrX	-	176	1	Intergenic	novelGene_5842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAGAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	156382335	156382159	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_156382200_156382300
PB_novel_46157_0	chrX	-	156	1	Intergenic	novelGene_5843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAGAAACAAATTTC	NA	False	NA	NA	False	NA	NA	NA	156387336	156387180	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_156387200_156387300
PB_novel_46158_0	chrX	-	177	1	Intergenic	novelGene_5844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACTCCATC	NA	False	NA	NA	False	NA	NA	NA	156435765	156435588	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_156435600_156435800
PB_novel_46163_0	chrX	+	178	1	Intergenic	novelGene_5845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157572290	157572468	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_157572300_157572500
PB_novel_46165_0	chrX	-	160	1	Intergenic	novelGene_5846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTTTAAAAAAACAAATAA	NA	False	NA	NA	False	NA	NA	NA	158114682	158114522	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_158114500_158114700
PB_novel_46166_0	chrX	-	177	1	Intergenic	novelGene_5847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATTCTAT	NA	False	NA	NA	False	NA	NA	NA	158141231	158141054	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_158141100_158141200
PB_novel_46168_0	chrX	+	163	1	Intergenic	novelGene_5848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAAAAAAAGAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	158164899	158165062	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_158164900_158165100
PB_novel_46173_0	chrX	+	168	1	Intergenic	novelGene_5849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAATCTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	158238647	158238815	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_158238600_158238800
PB_novel_46174_0	chrX	+	168	1	Intergenic	novelGene_5850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATGTTAAAAAAAAAAAAA	9778	False	NA	NA	False	NA	NA	NA	158258551	158258719	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_158258600_158258700
PB_novel_46180_1	chrX	+	156	1	Intergenic	novelGene_5851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	158298367	158298523	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_158298400_158298500
PB_novel_46194_0	chrX	+	177	1	Intergenic	novelGene_5852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	158728138	158728315	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_158728100_158728300
PB_novel_46197_0	chrX	-	163	1	Intergenic	novelGene_5853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATCTTTAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	158909772	158909609	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_158909600_158909800
PB_novel_46201_0	chrX	-	176	1	Intergenic	novelGene_5854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAGAAAATATCAT	NA	False	NA	NA	False	NA	NA	NA	159195174	159194998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_159195000_159195200
PB_novel_46208_0	chrX	-	188	1	Intergenic	novelGene_5855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	159552802	159552614	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_159552600_159552800
PB_novel_46219_0	chrX	+	185	1	Intergenic	novelGene_5856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAACAAAATTAAA	NA	False	NA	NA	False	NA	NA	NA	161264556	161264741	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_161264600_161264700
PB_novel_46223_0	chrX	+	156	1	Intergenic	novelGene_5857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	161444462	161444618	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_161444500_161444600
PB_novel_46224_0	chrX	+	176	1	Intergenic	novelGene_5858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	161449969	161450145	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_161450000_161450100
PB_novel_46229_0	chrX	+	175	1	Intergenic	novelGene_5859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATTTTTAATAT	NA	False	NA	NA	False	NA	NA	NA	161503744	161503919	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_161503700_161503900
PB_novel_46232_0	chrX	-	176	1	Intergenic	novelGene_5860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAAGAATGGAGC	NA	False	NA	NA	False	NA	NA	NA	161527188	161527012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_161527000_161527200
PB_novel_46236_0	chrX	+	176	1	Intergenic	novelGene_5861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAGTATA	NA	False	NA	NA	False	NA	NA	NA	161548454	161548630	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_161548500_161548600
PB_novel_46242_0	chrX	+	173	1	Intergenic	novelGene_5862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	161593485	161593658	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_161593500_161593700
PB_novel_46243_0	chrX	+	178	1	Intergenic	novelGene_5863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	161597321	161597499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_161597300_161597500
PB_novel_46254_0	chrX	+	174	1	Intergenic	novelGene_5864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACAAACAATATA	NA	False	NA	NA	False	NA	NA	NA	161634344	161634518	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_161634300_161634500
PB_novel_46255_0	chrX	-	182	1	Intergenic	novelGene_5865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCTGTTTATAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	161635480	161635298	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_161635300_161635500
PB_novel_46258_0	chrX	-	176	1	Intergenic	novelGene_5866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	161645264	161645088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_161645100_161645300
PB_novel_46263_0	chrX	-	174	1	Intergenic	novelGene_5867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAATCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	161711496	161711322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_161711300_161711500
PB_novel_46267_0	chrX	+	176	1	Intergenic	novelGene_5868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAGAAAAAGAAAATA	NA	False	NA	NA	False	NA	NA	NA	162586461	162586637	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_162586500_162586600
PB_novel_46287_0	chrX	+	162	1	Intergenic	novelGene_5869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	163173296	163173458	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_163173300_163173500
PB_novel_46288_0	chrX	-	182	1	Intergenic	novelGene_5870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTGGATGAAGTA	NA	False	NA	NA	False	NA	NA	NA	163244393	163244211	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_-_163244200_163244400
PB_novel_46295_0	chrX	+	176	1	Intergenic	novelGene_5871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	164960104	164960280	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_164960100_164960300
PB_novel_46296_0	chrX	+	195	1	Intergenic	novelGene_5872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	246	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	165184567	165184762	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_165184600_165184800
PB_novel_46297_0	chrX	+	177	1	Intergenic	novelGene_5873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	165211923	165212100	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_165211900_165212100
PB_novel_46307_0	chrX	+	543	1	Intergenic	novelGene_5874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	165289041	165289584	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_165289000_165289600
PB_novel_46318_0	chrX	+	176	1	Intergenic	novelGene_5875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	166955090	166955266	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrX_+_166955100_166955300
PB_novel_46333_138	chrX	-	2754	4	Antisense	novelGene_ENSMUSG00000095562.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3826	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	168804520	168801117	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrX_-_168801180_168801256_168803017_168803047_168803339_168803879
PB_novel_46347_0	chrY	-	173	1	Intergenic	novelGene_6321	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATCTTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	1093089	1092916	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrY_-_1092900_1093100
PB_novel_46348_0	chrY	+	165	1	Intergenic	novelGene_6322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATCTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	1138947	1139112	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrY_+_1138900_1139100
PB_novel_46350_0	chrY	+	173	1	Intergenic	novelGene_6323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATCTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	1201391	1201564	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrY_+_1201400_1201600
PB_novel_46358_0	chrY	-	178	1	Intergenic	novelGene_6324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTTTA	NA	False	NA	NA	False	NA	NA	NA	4413653	4413475	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrY_-_4413500_4413700
PB_novel_46366_0	chrY	+	177	1	Intergenic	novelGene_6325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGG	NA	False	NA	NA	False	NA	NA	NA	41547625	41547802	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrY_+_41547600_41547800
PB_novel_46370_0	chrY	-	175	1	Intergenic	novelGene_6326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAAAATTAACTG	NA	False	NA	NA	False	NA	NA	NA	44198109	44197934	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrY_-_44197900_44198100
PB_novel_46379_0	chrY	-	188	1	Intergenic	novelGene_6327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAGAAACAATTGAAAGT	NA	False	NA	NA	False	NA	NA	NA	59673718	59673530	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chrY_-_59673500_59673700
PB_novel_46387_245	chrY	-	2977	6	Antisense	novelGene_ENSMUSG00000096768.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGCAAAAAAAAAAA	2917	False	NA	NA	False	NA	NA	NA	90809813	90804012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrY_-_90804075_90804151_90805912_90805942_90806234_90806774_90807416_90809209_90809273_90809653
PB_novel_46387_29	chrY	-	2794	5	Antisense	novelGene_ENSMUSG00000096768.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	300	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGCAAAAAAAAAAA	3039	False	NA	NA	False	NA	NA	NA	90809691	90804012	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chrY_-_90804075_90804151_90805912_90805942_90806234_90806774_90807418_90809653
PB_novel_46798_0	chr1	+	171	1	Intergenic	novelGene_4661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAGACAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	136484455	136484626	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_+_136484500_136484600
PB_novel_46818_0	chr1	-	192	1	Intergenic	novelGene_4684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	149377280	149377088	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr1_-_149377100_149377300
PB_novel_46980_0	chr10	-	4345	1	Intergenic	novelGene_5908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13855932	13851587	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr10_-_13851600_13855900
PB_novel_47558_0	chr11	+	174	1	Intergenic	novelGene_7103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	33474271	33474445	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_33474300_33474400
PB_novel_47735_0	chr11	-	167	1	Intergenic	novelGene_7297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACCAATCTTTAAAAAAAG	4075	False	NA	NA	False	NA	NA	NA	72033479	72033312	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_72033300_72033500
PB_novel_47766_0	chr11	-	175	1	Intergenic	novelGene_7340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGAATGGTAC	NA	False	NA	NA	False	NA	NA	NA	75633586	75633411	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_75633400_75633600
PB_novel_47911_0	chr11	+	138	1	Intergenic	novelGene_7535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAATAAATAAATATTAAA	NA	False	NA	NA	False	NA	NA	NA	94497817	94497955	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_+_94497800_94498000
PB_novel_48095_0	chr11	-	3969	1	Intergenic	novelGene_7759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7205	False	NA	NA	False	NA	NA	NA	115466869	115462900	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr11_-_115462900_115466900
PB_novel_48298_0	chr12	-	404	1	Intergenic	novelGene_4983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAACCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54846795	54846391	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_54846400_54846800
PB_novel_48438_0	chr12	-	191	1	Intergenic	novelGene_5126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAACAAAACAAAACT	9250	False	NA	NA	False	NA	NA	NA	84763839	84763648	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr12_-_84763600_84763800
PB_novel_48620_0	chr13	+	180	1	Intergenic	novelGene_1874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGAAAGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	24924323	24924503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_24924300_24924500
PB_novel_48630_0	chr13	+	2955	1	Intergenic	novelGene_1885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29871827	29874782	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr13_+_29871800_29874800
PB_novel_49098_0	chr14	-	2771	1	Intergenic	novelGene_5312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	343	False	NA	NA	False	NA	NA	NA	30277685	30274914	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_-_30274900_30277700
PB_novel_49267_0	chr14	+	158	1	Intergenic	novelGene_5459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAAAATATTAAAA	NA	False	NA	NA	False	NA	NA	NA	67459646	67459804	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_67459600_67459800
PB_novel_49328_0	chr14	+	152	1	Intergenic	novelGene_5500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAATAAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	87377227	87377379	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr14_+_87377200_87377400
PB_novel_49505_0	chr15	-	951	1	NIC	ENSMUSG00000038679.17	novel	887	2	NA	NA	51	-43286	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9597	False	NA	NA	False	ATTAAA	-15	NA	50753808	50752857	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr15_-_50752900_50753800
PB_novel_49566_0	chr15	+	3058	1	Intergenic	novelGene_2634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAGAGAAAAAAAAAAAAA	2538	False	NA	NA	False	AATAAA	-37	NA	76693786	76696844	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_76693800_76696800
PB_novel_49756_0	chr15	+	330	1	Intergenic	novelGene_2834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	-2	True	NA	NA	False	NA	NA	NA	102981588	102981918	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr15_+_102981600_102981900
PB_novel_49769_0	chr16	-	2001	1	Intergenic	novelGene_2186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAATTAAAAAAAAAAAAA	8580	False	NA	NA	False	AAAAAG	-45	NA	3709578	3707577	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr16_-_3707600_3709600
PB_novel_49780_0	chr16	-	2492	1	Antisense	novelGene_ENSMUSG00000004070.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGACATAAAAGAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	4582562	4580070	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_4580100_4582600
PB_novel_49967_0	chr16	-	704	1	Antisense	novelGene_ENSMUSG00000022812.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-7	NA	38065465	38064761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_38064800_38065500
PB_novel_49985_1	chr16	-	3399	1	Antisense	novelGene_ENSMUSG00000022663.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44986326	44982927	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_44982900_44986300
PB_novel_49995_0	chr16	-	3169	1	Antisense	novelGene_ENSMUSG00000055447.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49731898	49728729	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_-_49728700_49731900
PB_novel_50023_0	chr16	+	175	1	Antisense	novelGene_ENSMUSG00000059920.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	64585328	64585503	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr16_+_64585300_64585500
PB_novel_50141_0	chr17	-	172	1	Intergenic	novelGene_3325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAAATCTTT	2817	False	NA	NA	False	NA	NA	NA	10718739	10718567	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr17_-_10718600_10718700
PB_novel_50336_0	chr17	+	2849	1	Antisense	novelGene_ENSMUSG00000024335.21_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2404	False	NA	NA	False	NA	NA	NA	34332462	34335311	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_+_34332500_34335300
PB_novel_50463_0	chr17	-	4811	1	Genic_Genomic	ENSMUSG00000097154.3	novel	NA	NA	NA	NA	-811	2413	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGTAAGCAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	71183741	71178930	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr17_-_71178900_71183700
PB_novel_50481_0	chr17	-	5606	1	Antisense	novelGene_ENSMUSG00000024073.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	9007	False	NA	NA	False	NA	NA	NA	74941294	74935688	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr17_-_74935700_74941300
PB_novel_50598_0	chr18	+	2965	1	Intergenic	novelGene_8429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21063198	21066163	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr18_+_21063200_21066200
PB_novel_50605_0	chr18	+	124	1	FSM	ENSMUSG00000117405.2	ENSMUST00000234075.2	592	1	552	-84	552	84	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	24078567	24078691	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr18_+_24078600_24078700
PB_novel_51051_0	chr19	+	176	1	Intergenic	novelGene_190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	2585	False	NA	NA	False	NA	NA	NA	40942806	40942982	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_+_40942800_40943000
PB_novel_51096_0	chr19	-	176	1	Intergenic	novelGene_248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAGAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	46527675	46527499	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr19_-_46527500_46527700
PB_novel_51535_0	chr2	+	4654	1	NIC	ENSMUSG00000027176.9	novel	2817	21	NA	NA	10	-14234	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAAGGA	6919	False	NA	NA	False	NA	NA	NA	104420886	104425540	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr2_+_104420900_104425500
PB_novel_51583_0	chr2	-	2624	1	Antisense	novelGene_ENSMUSG00000033943.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119729913	119727289	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr2_-_119727300_119729900
PB_novel_51882_0	chr2	-	158	1	Intergenic	novelGene_9389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAATAATAATAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	172520596	172520438	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr2_-_172520400_172520600
PB_novel_52185_1	chr3	-	4012	1	Genic_Genomic	ENSMUSG00000053192.10	novel	NA	NA	NA	NA	-2493	-1607	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	393	False	NA	NA	False	NA	NA	NA	95141975	95137963	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Genic_Genomic_chr3_-_95138000_95142000
PB_novel_52228_0	chr3	-	176	1	Intergenic	novelGene_1704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	100745683	100745507	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr3_-_100745500_100745700
PB_novel_52576_0	chr4	+	176	1	Intergenic	novelGene_462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGGAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	83159614	83159790	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_83159600_83159800
PB_novel_52597_0	chr4	+	4586	1	Intergenic	novelGene_483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-18	NA	94416957	94421543	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_94417000_94421500
PB_novel_52641_0	chr4	-	232	1	Intergenic	novelGene_512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106186671	106186439	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_-_106186400_106186700
PB_novel_52674_1	chr4	+	2841	1	Intergenic	novelGene_545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGAGCT	NA	False	NA	NA	False	NA	NA	NA	109045012	109047853	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr4_+_109045000_109047900
PB_novel_53119_0	chr5	+	164	1	Intergenic	novelGene_6374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25292682	25292846	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_25292700_25292800
PB_novel_53134_0	chr5	+	138	1	Intergenic	novelGene_6392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTAAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	30446660	30446798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_30446700_30446800
PB_novel_53208_0	chr5	+	177	1	Intergenic	novelGene_6469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATGTATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54237945	54238122	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_54237900_54238100
PB_novel_53512_0	chr5	+	3062	1	Antisense	novelGene_ENSMUSG00000038095.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-44	NA	124508264	124511326	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_+_124508300_124511300
PB_novel_53603_0	chr5	-	3251	1	Antisense	novelGene_ENSMUSG00000029729.13_AS_novelGene_ENSMUSG00000106102.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	138105249	138101998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Antisense_chr5_-_138102000_138105200
PB_novel_53686_0	chr5	+	3421	1	Intergenic	novelGene_6949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGTAAAAAAAAAAAAAAAT	7389	False	NA	NA	False	NA	NA	NA	148310595	148314016	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr5_+_148310600_148314000
PB_novel_53922_0	chr6	-	323	1	Intergenic	novelGene_3033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACACCCCACAAAATAGG	NA	False	NA	NA	False	NA	NA	NA	67238084	67237761	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr6_-_67237800_67238100
PB_novel_54203_0	chr7	+	168	1	Intergenic	novelGene_3722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAATAAAATAA	691	False	NA	NA	False	NA	NA	NA	3214571	3214739	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_3214600_3214700
PB_novel_54254_0	chr7	-	163	1	Intergenic	novelGene_3797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATTATTTAAAAAAA	6549	False	NA	NA	False	NA	NA	NA	16241961	16241798	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_16241800_16242000
PB_novel_54369_0	chr7	+	228	1	Intergenic	novelGene_3928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	38005486	38005714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_+_38005500_38005700
PB_novel_54424_0	chr7	-	5730	1	Intergenic	novelGene_3987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	49037160	49031430	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_49031400_49037200
PB_novel_54610_0	chr7	-	160	1	Intergenic	novelGene_4150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATGAATCTTTAAAAA	4211	False	NA	NA	False	NA	NA	NA	115659845	115659685	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr7_-_115659700_115659800
PB_novel_54705_0	chr7	+	1523	1	NIC	ENSMUSG00000030967.16	novel	5008	10	NA	NA	1778	163	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132584365	132585888	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	NIC_chr7_+_132584400_132585900
PB_novel_55040_0	chr8	-	149	1	Intergenic	novelGene_1215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCTTTTTTAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	85841973	85841824	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_85841800_85842000
PB_novel_55093_0	chr8	-	155	1	Intergenic	novelGene_1276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATTTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	105143312	105143157	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr8_-_105143200_105143300
PB_novel_55393_0	chr9	+	4132	1	Intergenic	novelGene_7957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGCAAAAAAAAAAAAAAAA	3447	False	NA	NA	False	NA	NA	NA	44092561	44096693	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_44092600_44096700
PB_novel_55474_0	chr9	+	3994	1	Intergenic	novelGene_8061	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59384781	59388775	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_+_59384800_59388800
PB_novel_55685_0	chr9	-	178	1	Intergenic	novelGene_8253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGGTT	NA	False	NA	NA	False	NA	NA	NA	99765261	99765083	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Intergenic_chr9_-_99765100_99765300
SIRV10001A_0	SIRV10001	+	6020	1	FSM	SIRV10001A	SIRV10001	9941	1	3920	1	3920	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	735	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	3920	9940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV10001_+_3900_9900
SIRV10002A_1	SIRV10002	+	4738	1	FSM	SIRV10002A	SIRV10002	10001	1	5262	1	5262	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	5262	10000	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV10002_+_5300_10000
SIRV10003A_0	SIRV10003	+	7569	1	FSM	SIRV10003A	SIRV10003	9970	1	2400	1	2400	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	472	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	2400	9969	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV10003_+_2400_10000
SIRV12001A_0	SIRV12001	+	4051	1	FSM	SIRV12001A	SIRV12001	12029	1	7972	6	7972	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGT	NA	False	NA	NA	False	NA	NA	NA	7972	12023	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV12001_+_8000_12000
SIRV12001A_3	SIRV12001	+	4436	1	FSM	SIRV12001A	SIRV12001	12029	1	0	7593	0	-7593	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTATGAAAGGAATAAGCA	NA	False	NA	NA	False	NA	NA	NA	0	4436	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV12001_+_0_4400
SIRV12002A_0	SIRV12002	+	4390	1	FSM	SIRV12002A	SIRV12002	11999	1	7607	2	7607	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	452	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AG	NA	False	NA	NA	False	AAGAAA	-34	NA	7607	11997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV12002_+_7600_12000
SIRV12003A_0	SIRV12003	+	5429	1	FSM	SIRV12003A	SIRV12003	12000	1	6570	1	6570	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	422	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	6570	11999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV12003_+_6600_12000
SIRV1A_1	SIRV1	-	1361	6	FSM	SIRV1A	SIRV103	1363	6	1	1	1	-1	multi-exon	FALSE	canonical	3	1304	junction_5	2022.74937646758	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCGATGCATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	10790	1001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
SIRV1A_2	SIRV1	-	1559	6	FSM	SIRV1A	SIRV101	1561	6	1	1	1	-1	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCGATGCATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	10785	1001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
SIRV1A_28	SIRV1	-	1297	4	FSM	SIRV1A	SIRV102	1300	4	1	2	1	-2	multi-exon	FALSE	canonical	3	4191	junction_1	833.052752764727	1901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACTTTGAATCGATGCAT	NA	False	NA	NA	False	NA	NA	NA	10365	1008	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV1_-_1485_6337_6814_7552_7815_10282
SIRV1A_3	SIRV1	-	971	3	FSM	SIRV1A	SIRV106	973	3	1	1	1	-1	multi-exon	FALSE	canonical	2	497	junction_2	204	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCGATGCATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	10785	1001	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV1_-_1485_7552_7809_10553
SIRV1A_41	SIRV1	-	667	5	FSM	SIRV1A	SIRV105	670	5	1	2	1	-2	multi-exon	FALSE	canonical	3	1547	junction_4	2187.81237769604	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGCCTGGAAGTCAAAAGA	NA	False	NA	NA	False	NA	NA	NA	10639	6451	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV1_-_6474_6560_6814_7552_7815_10282_10367_10593
SIRV1B_0	SIRV1	+	695	3	FSM	SIRV1B	SIRV108	702	3	1	6	1	-6	multi-exon	FALSE	canonical	3	89	junction_1	13	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACGTGAGAAAGACATAGG	NA	False	NA	NA	False	NA	NA	NA	10583	11600	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV1_+_10792_10897_11188_11403
SIRV1B_1	SIRV1	+	461	3	FSM	SIRV1B	SIRV109	464	3	1	2	1	-2	multi-exon	FALSE	canonical	3	3494	junction_2	198.5	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCAACTTCGGCTAATCAT	NA	False	NA	NA	False	NA	NA	NA	10712	11641	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV1_+_10792_10882_11058_11434
SIRV2A_0	SIRV2	-	2048	11	FSM	SIRV2A	SIRV201	2051	11	1	2	1	-2	multi-exon	FALSE	canonical	3	240	junction_6	997.649657946115	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATCCCAACGTGGCATG	NA	False	NA	NA	False	NA	NA	NA	5906	1002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
SIRV2A_19	SIRV2	-	1969	11	FSM	SIRV2A	SIRV202	1971	11	1	1	1	-1	multi-exon	FALSE	canonical	3	173	junction_6	1003.16519576788	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCGCTCTATAGCTGTAT	NA	False	NA	NA	False	NA	NA	NA	5910	1036	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
SIRV2A_36	SIRV2	-	681	5	FSM	SIRV2A	SIRV203	686	5	1	4	1	-4	multi-exon	FALSE	canonical	3	2087	junction_4	259.923065540556	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGTAATTGACGTGGACG	NA	False	NA	NA	False	NA	NA	NA	5894	3669	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV2_-_3826_3966_4095_4338_4480_4687_4801_5751
SIRV2A_5	SIRV2	-	1182	6	ISM	SIRV2A	SIRV201	2051	11	2737	4	1562	-4	3prime_fragment	FALSE	canonical	3	377	junction_4	43.081318457076	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGACATCCCAACGTGGCA	NA	False	NA	NA	False	NA	NA	NA	3170	1004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105
SIRV2B_0	SIRV2	+	519	1	FSM	SIRV2B	SIRV205	523	1	1	3	1	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCATGGCGTCTACCGCTT	NA	False	NA	NA	False	NA	NA	NA	1109	1628	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV2_+_1100_1600
SIRV2C_0	SIRV2	+	419	1	FSM	SIRV2C	SIRV206	424	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTCGAACACACTTCCAT	NA	False	NA	NA	False	NA	NA	NA	4034	4453	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV2_+_4000_4500
SIRV3A_0	SIRV3	+	2465	5	FSM	SIRV3A	SIRV301	2467	5	1	1	1	1	multi-exon	FALSE	canonical	3	1234	junction_3	576.603416569829	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTTAACGTCTCGTAAGA	NA	False	NA	NA	False	NA	NA	NA	1945	8938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV3_+_2006_4568_4780_6057_7989_8127_8208_8755
SIRV3A_1	SIRV3	+	2370	3	FSM	SIRV3A	SIRV306	2373	3	1	2	1	-2	multi-exon	FALSE	canonical	3	759	junction_2	1218.5	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGTACCTAACAGTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	1945	8290	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV3_+_2006_4003_4081_6057
SIRV3A_10	SIRV3	+	2014	3	FSM	SIRV3A	SIRV303	2018	3	1	3	1	-3	multi-exon	FALSE	canonical	3	1857	junction_1	482	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTTAACAGGTTCTC	NA	False	NA	NA	False	NA	NA	NA	1964	7819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV3_+_2006_4568_4780_6057
SIRV3A_22	SIRV3	+	1081	8	FSM	SIRV3A	SIRV304	1083	8	1	1	1	-1	multi-exon	FALSE	canonical	3	1134	junction_6	907.203057620014	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGGTTAACGTCTCGTAA	NA	False	NA	NA	False	NA	NA	NA	1964	8936	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV3_+_2006_4003_4081_4568_4780_6057_6334_7270_7367_7872_7989_8124_8208_8755
SIRV3A_23	SIRV3	+	777	5	FSM	SIRV3A	SIRV307	779	5	1	1	1	1	multi-exon	FALSE	canonical	3	1252	junction_4	794.143052289699	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTTAACGTCTCGTAAGA	NA	False	NA	NA	False	NA	NA	NA	1964	8938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV3_+_2006_4003_4081_4574_4775_6057_6334_8755
SIRV3A_24	SIRV3	+	1803	2	FSM	SIRV3A	SIRV302	1807	2	1	3	1	-3	multi-exon	FALSE	canonical	3	834	junction_1	0	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTTAACAGGTTCTC	NA	False	NA	NA	False	NA	NA	NA	1964	7819	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV3_+_2006_6057
SIRV3A_57	SIRV3	+	431	3	FSM	SIRV3A	SIRV305	436	3	1	4	1	-4	multi-exon	FALSE	canonical	3	1609	junction_2	828.5	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCCGAATCTTAATAGAC	NA	False	NA	NA	False	NA	NA	NA	4004	6714	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV3_+_4081_4568_4780_6570
SIRV3A_71	SIRV3	+	1254	1	ISM	SIRV3A	SIRV301	2467	5	4622	1119	2563	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	246	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTTAACAGGTTCTCA	NA	False	NA	NA	False	NA	NA	NA	6566	7820	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_SIRV3_+_6600_7800
SIRV3A_72	SIRV3	+	1543	3	ISM	SIRV3A	SIRV301	2467	5	4764	1	2705	1	3prime_fragment	FALSE	canonical	3	1234	junction_1	499	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTTAACGTCTCGTAAGA	NA	False	NA	NA	False	NA	NA	NA	6708	8938	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_SIRV3_+_7989_8127_8208_8755
SIRV3B_0	SIRV3	-	476	3	FSM	SIRV3B	SIRV308	479	3	1	2	1	-2	multi-exon	FALSE	canonical	3	5391	junction_1	17	734	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTTTATTTGTATGGCG	NA	False	NA	NA	False	NA	NA	NA	1981	1002	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV3_-_1168_1532_1765_1902
SIRV3C_0	SIRV3	-	587	3	FSM	SIRV3C	SIRV310	589	3	1	1	1	-1	multi-exon	FALSE	canonical	3	1245	junction_2	66	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCCTTGGTTTTGGGTAC	NA	False	NA	NA	False	NA	NA	NA	9913	8760	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV3_-_8967_9189_9325_9667
SIRV3C_2	SIRV3	-	789	3	FSM	SIRV3C	SIRV309	796	3	1	6	1	-6	multi-exon	FALSE	canonical	3	1394	junction_2	16	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTTGATCTCAAATATC	NA	False	NA	NA	False	CATAAA	-15	NA	9942	8803	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV3_-_8976_9189_9299_9434
SIRV3D_0	SIRV3	-	156	1	FSM	SIRV3D	SIRV311	161	1	1	4	1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCGAATATAAAGATTTCG	NA	False	NA	NA	False	TATAAA	-43	NA	4761	4605	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV3_-_4600_4800
SIRV4001A_0	SIRV4001	+	3996	1	FSM	SIRV4001A	SIRV4001	3997	1	0	1	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1583	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	0	3996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV4001_+_0_4000
SIRV4002A_0	SIRV4002	+	3997	1	FSM	SIRV4002A	SIRV4002	3999	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4822	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	1	3998	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV4002_+_0_4000
SIRV4003A_0	SIRV4003	+	3998	1	FSM	SIRV4003A	SIRV4003	4001	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1995	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CC	NA	False	NA	NA	False	TATAAA	-43	NA	1	3999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV4003_+_0_4000
SIRV4A_0	SIRV4	-	669	4	FSM	SIRV4A	SIRV403	670	4	1	0	1	0	multi-exon	FALSE	canonical	0	0	junction_3	3065.46367708958	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	15121	8322	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV4_-_8373_8629_8991_13672_13829_15019
SIRV4A_2	SIRV4	-	590	4	FSM	SIRV4A	SIRV404	592	4	1	1	1	0	multi-exon	FALSE	canonical	3	669	junction_3	2787.93595494747	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTGATATTTAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	14622	8323	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV4_-_8373_8629_8991_13672_13823_14592
SIRV4A_29	SIRV4	-	620	2	FSM	SIRV4A	SIRV405	626	2	1	5	1	-5	multi-exon	FALSE	canonical	3	7498	junction_1	0	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGTGGTTCTCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	13936	8634	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV4_-_8991_13672
SIRV4A_3	SIRV4	-	568	5	FSM	SIRV4A	SIRV408	570	5	1	1	1	-1	multi-exon	FALSE	canonical	0	0	junction_4	2658.88059152719	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATTTGATATTTAGAGCG	NA	False	NA	NA	False	NA	NA	NA	15121	8324	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV4_-_8373_8629_8748_8846_8991_13672_13829_15019
SIRV4B_0	SIRV4	-	613	2	FSM	SIRV4B	SIRV406	617	2	1	3	1	-3	multi-exon	FALSE	canonical	3	2584	junction_1	0	455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAACATTTAAAAATAGCC	NA	False	NA	NA	False	NA	NA	NA	5157	3640	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV4_-_4104_5007
SIRV4C_0	SIRV4	+	1559	3	FSM	SIRV4C	SIRV409	1567	3	1	7	1	-7	multi-exon	FALSE	canonical	3	1019	junction_2	11.5	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGGTTATATTGTAACC	NA	False	NA	NA	False	NA	NA	NA	1001	3396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV4_+_1347_1678_1886_2389
SIRV4C_13	SIRV4	+	724	1	ISM	SIRV4C	SIRV409	1567	3	1672	7	1217	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGGTTATATTGTAACC	NA	False	NA	NA	False	NA	NA	NA	2672	3396	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_SIRV4_+_2700_3400
SIRV4C_9	SIRV4	+	948	2	FSM	SIRV4C	SIRV410	950	2	1	1	1	-1	multi-exon	FALSE	canonical	3	1621	junction_1	0	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTATATGTTGTTGCT	NA	False	NA	NA	False	NA	NA	NA	1456	2770	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV4_+_1886_2251
SIRV5A_0	SIRV5	+	2024	16	FSM	SIRV5A	SIRV505	2029	16	1	4	1	-2	multi-exon	FALSE	canonical	3	5578	junction_10	1970.92572045614	5141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGGTTTACCGCCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	1001	10987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
SIRV5A_153	SIRV5	+	551	2	FSM	SIRV5A	SIRV506	552	2	1	0	1	0	multi-exon	FALSE	canonical	3	11478	junction_1	0	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1009	2398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV5_+_1150_1987
SIRV5A_154	SIRV5	+	2080	17	FSM	SIRV5A	SIRV508	2085	17	1	4	1	-2	multi-exon	FALSE	canonical	3	2297	junction_10	2773.74385702339	1319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGGTTTACCGCCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	1009	10987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
SIRV5A_157	SIRV5	+	545	2	FSM	SIRV5A	SIRV511	546	2	1	0	1	0	multi-exon	FALSE	canonical	0	0	junction_1	0	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1009	2398	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV5_+_1144_1987
SIRV5A_225	SIRV5	+	1981	18	FSM	SIRV5A	SIRV502	1984	18	1	2	1	-2	multi-exon	FALSE	canonical	3	681	junction_4	3430.92271124242	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGGTTTACCGCCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	1020	10987	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
SIRV5A_269	SIRV5	+	529	6	FSM	SIRV5A	SIRV507	533	6	1	3	0	-3	multi-exon	FALSE	canonical	3	3871	junction_1	2708.37786137754	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTCGTAAGTGGTCAAGC	NA	False	NA	NA	False	NA	NA	NA	1028	3595	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483
SIRV5A_270	SIRV5	+	2472	18	FSM	SIRV5A	SIRV510	2474	18	1	1	1	0	multi-exon	FALSE	canonical	3	1532	junction_17	2924.81329602575	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	1029	11866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
SIRV5A_439	SIRV5	+	518	2	ISM	SIRV5A	SIRV503	526	3	1	149	1	2	5prime_fragment	FALSE	canonical	3	11825	junction_1	0	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACCGCCAAAAAATGGGAG	NA	False	NA	NA	False	NA	NA	NA	8202	10993	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_SIRV5_+_8586_10858
SIRV5A_441	SIRV5	+	884	4	FSM	SIRV5A	SIRV509	885	4	1	0	1	0	multi-exon	FALSE	canonical	3	1024	junction_3	4608.45413946538	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	8316	11866	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV5_+_8382_8454_8586_10858_10992_11311
SIRV5A_450	SIRV5	+	2469	1	FSM	SIRV5A	SIRV504	2473	1	1	3	1	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	989	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGACCATGTAAAACATTT	NA	False	NA	NA	False	NA	NA	NA	11134	13603	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV5_+_11100_13600
SIRV5B_0	SIRV5	-	223	1	FSM	SIRV5B	SIRV512	229	1	1	5	1	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTTGAAACATGTTAGAC	NA	False	NA	NA	False	AATATA	-18	NA	2405	2182	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV5_-_2200_2400
SIRV6001A_0	SIRV6001	+	5997	1	FSM	SIRV6001A	SIRV6001	6000	1	0	3	0	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2025	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGT	NA	False	NA	NA	False	NA	NA	NA	0	5997	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6001_+_0_6000
SIRV6002A_0	SIRV6002	+	5996	1	FSM	SIRV6002A	SIRV6002	6000	1	0	4	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1650	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGT	NA	False	NA	NA	False	NA	NA	NA	0	5996	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6002_+_0_6000
SIRV6003A_0	SIRV6003	+	5998	1	FSM	SIRV6003A	SIRV6003	6000	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	729	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	1	5999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6003_+_0_6000
SIRV6A_0	SIRV6	+	1433	9	FSM	SIRV6A	SIRV601	1435	9	1	1	1	0	multi-exon	TRUE	canonical	3	2056	junction_3	7596.8547757855	1299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1001	11825	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_1187_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
SIRV6A_100	SIRV6	+	571	4	FSM	SIRV6A	SIRV607	574	4	1	2	1	-2	multi-exon	FALSE	canonical	0	0	junction_3	10529.1711924538	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATCTGCAGTCAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	1131	2538	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_1187_1468_1736_1845_2027_2470
SIRV6A_125	SIRV6	+	483	4	FSM	SIRV6A	SIRV609	485	4	1	1	1	-1	multi-exon	FALSE	canonical	3	15063	junction_3	5493.41668626083	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCACAAGTCAAGCCATTG	NA	False	NA	NA	False	AATAGA	-45	NA	1138	2119	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845
SIRV6A_141	SIRV6	+	451	3	FSM	SIRV6A	SIRV611	454	3	2	1	2	-1	multi-exon	FALSE	canonical	3	2656	junction_1	12443	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGGTGTTTATAGTTT	NA	False	NA	NA	False	NA	NA	NA	1305	1949	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_1382_1468_1535_1640
SIRV6A_168	SIRV6	+	1161	5	FSM	SIRV6A	SIRV610	1163	5	1	1	1	-1	multi-exon	FALSE	canonical	3	12902	junction_1	2966.72052736688	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCTAAAATGGGGTTTGC	NA	False	NA	NA	False	ATTAAA	-4	NA	2473	11689	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724_11109_11205
SIRV6A_180	SIRV6	+	451	5	FSM	SIRV6A	SIRV614	459	5	1	7	1	-7	multi-exon	FALSE	canonical	3	2976	junction_3	7392.30118095847	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAGAAAGTAAGACTGT	NA	False	NA	NA	False	AAAAAG	-10	NA	2517	10808	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_2621_2740_2829_3106_3165_7805_7924_10724
SIRV6A_216	SIRV6	+	1956	1	FSM	SIRV6A	SIRV603	1969	1	3	10	3	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAGAAATCATGGAAGAT	NA	False	NA	NA	False	ATTAAA	-16	NA	9002	10958	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_9000_11000
SIRV6A_217	SIRV6	+	779	3	FSM	SIRV6A	SIRV615	783	3	1	3	1	-3	multi-exon	FALSE	canonical	3	18822	junction_2	2138	1827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGGGAAAGAGCAATCAAC	NA	False	NA	NA	False	NA	NA	NA	10238	11327	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_10819_11031_11109_11205
SIRV6A_29	SIRV6	+	1525	10	FSM	SIRV6A	SIRV612	1528	10	1	2	1	-1	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAGAAGACCGGGAGTATA	NA	False	NA	NA	False	NA	NA	NA	1088	11823	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
SIRV6A_31	SIRV6	+	1536	10	FSM	SIRV6A	SIRV604	1537	10	1	0	1	0	multi-exon	TRUE	canonical	0	0	junction_4	9140.21704229429	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATACTTAGTTCAATCTT	NA	False	NA	NA	False	NA	NA	NA	1088	11837	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11034_11109_11205
SIRV6A_70	SIRV6	+	571	8	FSM	SIRV6A	SIRV602	574	8	1	2	1	-2	multi-exon	FALSE	canonical	3	8561	junction_3	5767.41567350754	953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGCCTGCCTAATTGTTG	NA	False	NA	NA	False	NA	NA	NA	1125	11277	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
SIRV6A_99	SIRV6	+	1085	9	FSM	SIRV6A	SIRV605	1088	9	1	2	1	-1	multi-exon	FALSE	canonical	0	0	junction_4	8239.38325968637	913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGAAAGAGCAATCAACTC	NA	False	NA	NA	False	NA	NA	NA	1131	11329	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
SIRV6B_0	SIRV6	-	272	1	FSM	SIRV6B	SIRV617	276	1	1	3	1	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGAGTCTACTTGGGCA	NA	False	NA	NA	False	NA	NA	NA	1819	1547	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_-_1500_1800
SIRV6C_0	SIRV6	-	181	1	FSM	SIRV6C	SIRV618	189	1	1	7	1	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAATAGATGGTCTAGCT	NA	False	NA	NA	False	NA	NA	NA	2546	2365	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV6_-_2400_2500
SIRV7A_1	SIRV7	-	2494	5	FSM	SIRV7A	SIRV703	2498	5	1	3	1	0	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	1168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGTGTTAATATGAATC	NA	False	NA	NA	False	TATAAA	-19	NA	147917	1003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
SIRV7A_2	SIRV7	-	2243	6	FSM	SIRV7A	SIRV702	2247	6	1	3	1	0	multi-exon	FALSE	canonical	3	229	junction_3	1351.00954844886	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGTGTTAATATGAATC	NA	False	NA	NA	False	TATAAA	-19	NA	114915	1003	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
SIRV7A_44	SIRV7	-	425	3	FSM	SIRV7A	SIRV704	428	3	1	2	1	-2	multi-exon	FALSE	canonical	3	4944	junction_1	1233	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATTTTCGTATTTGCTG	NA	False	NA	NA	False	ATTAAA	-31	NA	114737	55851	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV7_-_56098_78841_78964_114680
SIRV7A_5	SIRV7	-	1265	1	ISM	SIRV7A	SIRV702	2247	6	112647	4	112469	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	299	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTAGTGTTAATATGAAT	NA	False	NA	NA	False	TATAAA	-18	NA	2269	1004	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	ISM_SIRV7_-_1000_2300
SIRV7A_57	SIRV7	-	885	6	FSM	SIRV7A	SIRV708	889	6	1	3	1	-3	multi-exon	FALSE	canonical	0	0	junction_4	1573.00102987887	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAAATCCTAAGAGATC	NA	False	NA	NA	False	NA	NA	NA	147956	56040	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV7_-_56098_70883_70988_78841_78909_78928_78964_114686_114961_147608
SIRV7A_59	SIRV7	-	940	5	FSM	SIRV7A	SIRV706	949	5	1	8	1	-2	multi-exon	FALSE	canonical	3	3147	junction_1	1522.61994601411	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAATCCTAAGAGATCG	NA	False	NA	NA	False	NA	NA	NA	147956	56039	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV7_-_56098_70883_70988_78841_78964_114680_114989_147608
SIRV7A_9	SIRV7	-	2459	5	FSM	SIRV7A	SIRV701	2462	5	1	2	1	0	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	2182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	TATAAA	-17	NA	147922	1005	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
SIRV8001A_0	SIRV8001	+	7998	1	FSM	SIRV8001A	SIRV8001	8001	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2769	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AC	NA	False	NA	NA	False	NA	NA	NA	1	7999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV8001_+_0_8000
SIRV8002A_0	SIRV8002	+	7998	1	FSM	SIRV8002A	SIRV8002	8000	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2791	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	1	7999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV8002_+_0_8000
SIRV8003A_0	SIRV8003	+	7998	1	FSM	SIRV8003A	SIRV8003	8000	1	1	1	1	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	874	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	1	7999	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_SIRV8003_+_0_8000
TR_locus_0_1	chr13	+	2663	3	FSM	ENSMUSG00000076749.3	ENSMUST00000103558.3	924	3	-1993	254	-1993	-254	multi-exon	FALSE	canonical	2	6	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCTGCAACTTCTCTCT	276	False	NA	NA	False	CATAAA	-23	NA	19396279	19400940	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr13_+_19398603_19400033_19400079_19400645
TR_locus_4_0	chr14	+	1176	2	FSM	ENSMUSG00000095854.5	ENSMUST00000181038.3	415	2	-14	-747	-14	747	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGCACAGAACAACAAAAGG	1846	False	NA	NA	False	AATAAA	-23	NA	53093056	53094370	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_53093174_53093311
TR_locus_4_3	chr14	+	703	2	Fusion	ENSMUSG00000096827.3_ENSMUSG00000094619.3	novel	456	2	NA	NA	85	329	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTCTTGTCAATAATGTT	NA	False	NA	NA	False	TATAAA	-22	NA	53315993	53404964	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	Fusion_chr14_+_53316056_53404323
TR_locus_4_4	chr14	+	2178	2	FSM	ENSMUSG00000076839.4	ENSMUST00000103651.4	331	2	-95	-1752	-95	1752	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGTGAACATTCTCATT	5432	False	NA	NA	False	TATAAA	-11	NA	53782375	53784734	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_53782523_53782703
TR_locus_4_5	chr14	+	755	2	FSM	ENSMUSG00000093966.3	ENSMUST00000103655.3	411	2	-37	-307	-37	307	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATACTCCAGAATCATTTA	NA	False	NA	NA	False	NA	NA	NA	53836247	53837174	mouse_ES_PacBio_cDNA_long	iso_detect_ref_PacBio_cDNA_IsoTools_final	FSM_chr14_+_53836417_53836588
